Ensembl Gene ID Gene name (HGNC) Transcript ID Translation ID Is translated? Transcript type Not found tag CCDS ID Transcript support level Protein length Functional residues (firestar) Structure score (Matador) Conservation (CORSAIR) Domain Score (SPADE) Trans-membrane helices (THUMP) Signal sequence (CRASH) Trifid Score Peptides APPRIS score APPRIS Annotation ENSMUSG00000025982 Sf3b1 ENSMUST00000185429 - NO_TRANSLATION retained_intron ENSMUSG00000025982 Sf3b1 ENSMUST00000188859 - NO_TRANSLATION retained_intron ENSMUSG00000025982 Sf3b1 ENSMUST00000189051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025982 Sf3b1 ENSMUST00000191303 ENSMUSP00000139469 TRANSLATION nonsense_mediated_decay - - 5 144.0 0.0 1.264 15.0 0.0 0.0 -4,-5 0.4651 2 -2.0 MINOR ENSMUSG00000025982 Sf3b1 ENSMUST00000190175 - NO_TRANSLATION retained_intron ENSMUSG00000025982 Sf3b1 ENSMUST00000188419 - NO_TRANSLATION retained_intron ENSMUSG00000025982 Sf3b1 ENSMUST00000027127 ENSMUSP00000027127 TRANSLATION protein_coding - CCDS35567.1 1 1304.0 0.0 17.894 22.4 160.4 0.0 -4,-5 1.0 43 16.0 PRINCIPAL:1 ENSMUSG00000025982 Sf3b1 ENSMUST00000187500 - NO_TRANSLATION retained_intron ENSMUSG00000055197 Fev ENSMUST00000068631 ENSMUSP00000070878 TRANSLATION protein_coding - CCDS15058.1 1 237.0 0.0 1.72375 7.9 120.5 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000055197 Fev ENSMUST00000159232 ENSMUSP00000125067 TRANSLATION protein_coding - - 1 142.0 0.0 0.6 1.0 42.8 0.0 -4,-6 0.0112 - 3.426 MINOR ENSMUSG00000055197 Fev ENSMUST00000162938 - NO_TRANSLATION retained_intron ENSMUSG00000026276 Septin2 ENSMUST00000150931 ENSMUSP00000117517 TRANSLATION protein_coding stop - 3 221.0 16.0 5.99 0.0 284.6 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000026276 Septin2 ENSMUST00000188923 - NO_TRANSLATION retained_intron ENSMUSG00000026276 Septin2 ENSMUST00000112912 ENSMUSP00000108534 TRANSLATION protein_coding stop - 5 221.0 16.0 5.99 0.0 284.6 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000026276 Septin2 ENSMUST00000131175 ENSMUSP00000120694 TRANSLATION protein_coding stop - 5 212.0 13.0 5.66 0.0 278.0 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000026276 Septin2 ENSMUST00000152476 - NO_TRANSLATION retained_intron ENSMUSG00000026276 Septin2 ENSMUST00000149532 ENSMUSP00000115536 TRANSLATION protein_coding stop - 5 120.0 7.0 3.08 0.0 113.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026276 Septin2 ENSMUST00000142401 ENSMUSP00000121974 TRANSLATION protein_coding stop - 2 177.0 7.0 3.83 0.0 157.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026276 Septin2 ENSMUST00000152778 - NO_TRANSLATION retained_intron ENSMUSG00000026276 Septin2 ENSMUST00000157021 ENSMUSP00000134173 TRANSLATION protein_coding start - 2 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026276 Septin2 ENSMUST00000153826 ENSMUSP00000114614 TRANSLATION protein_coding stop - 5 77.0 7.0 1.75 0.0 45.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026276 Septin2 ENSMUST00000136182 ENSMUSP00000118621 TRANSLATION protein_coding stop - 2 107.0 7.0 2.83 0.0 146.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026276 Septin2 ENSMUST00000027495 ENSMUSP00000027495 TRANSLATION protein_coding - CCDS15190.1 1 361.0 16.0 8.07 15.8 424.0 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000026276 Septin2 ENSMUST00000129211 ENSMUSP00000120511 TRANSLATION protein_coding stop - 5 213.0 13.0 5.66 0.0 278.0 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000026663 Atf6 ENSMUST00000027974 ENSMUSP00000027974 TRANSLATION protein_coding - CCDS56653.1 1 656.0 0.0 0.64 6.0 42.8 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000026663 Atf6 ENSMUST00000182787 - NO_TRANSLATION retained_intron ENSMUSG00000066877 Nck2 ENSMUST00000202540 ENSMUSP00000144224 TRANSLATION protein_coding stop - 3 142.0 0.0 2.55 0.0 51.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000066877 Nck2 ENSMUST00000136648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066877 Nck2 ENSMUST00000086421 ENSMUSP00000083611 TRANSLATION protein_coding - CCDS14924.1 1 380.0 0.0 4.19 29.8 233.2 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000066877 Nck2 ENSMUST00000114744 ENSMUSP00000110392 TRANSLATION protein_coding start - 5 77.0 0.0 1.75 1.1 51.4 0.0 -4,-5 0.0032 1 -2.0 MINOR ENSMUSG00000066877 Nck2 ENSMUST00000124817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066877 Nck2 ENSMUST00000187435 ENSMUSP00000140338 TRANSLATION protein_coding stop - 5 21.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025907 Rb1cc1 ENSMUST00000160062 ENSMUSP00000123876 TRANSLATION protein_coding stop - 3 40.0 0.0 0.0 0.0 0.0 0.0 -1,-6 0.0 - -2.0 MINOR ENSMUSG00000025907 Rb1cc1 ENSMUST00000159802 - NO_TRANSLATION retained_intron ENSMUSG00000025907 Rb1cc1 ENSMUST00000162257 ENSMUSP00000125334 TRANSLATION nonsense_mediated_decay start - 5 536.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0035 20 -2.0 MINOR ENSMUSG00000025907 Rb1cc1 ENSMUST00000159206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025907 Rb1cc1 ENSMUST00000027040 ENSMUSP00000027040 TRANSLATION protein_coding - CCDS35507.1 1 1588.0 0.0 4.15 6.9 89.3 0.0 -1,-6 1.0 40 13.646 PRINCIPAL:1 ENSMUSG00000025907 Rb1cc1 ENSMUST00000159656 - NO_TRANSLATION retained_intron ENSMUSG00000025907 Rb1cc1 ENSMUST00000159530 ENSMUSP00000124220 TRANSLATION protein_coding start - 1 227.0 0.0 4.15 0.0 94.9 0.0 -4,-5 0.0205 2 -2.0 MINOR ENSMUSG00000025907 Rb1cc1 ENSMUST00000162210 - NO_TRANSLATION retained_intron ENSMUSG00000025907 Rb1cc1 ENSMUST00000161183 - NO_TRANSLATION retained_intron ENSMUSG00000025907 Rb1cc1 ENSMUST00000159661 - NO_TRANSLATION retained_intron ENSMUSG00000025907 Rb1cc1 ENSMUST00000159349 - NO_TRANSLATION retained_intron ENSMUSG00000025907 Rb1cc1 ENSMUST00000160871 ENSMUSP00000123768 TRANSLATION protein_coding stop - 2 164.0 0.0 0.0 0.0 0.0 0.0 -1,-6 0.0 4 -2.0 MINOR ENSMUSG00000025907 Rb1cc1 ENSMUST00000161327 ENSMUSP00000125348 TRANSLATION protein_coding start - 1 1468.0 0.0 4.15 0.0 89.3 0.0 -4,-5 0.144 37 -2.0 MINOR ENSMUSG00000025907 Rb1cc1 ENSMUST00000159906 ENSMUSP00000125396 TRANSLATION protein_coding stop - 2 93.0 0.0 0.0 0.0 0.0 0.0 -1,-6 0.0 2 -2.0 MINOR ENSMUSG00000025907 Rb1cc1 ENSMUST00000162795 ENSMUSP00000124676 TRANSLATION protein_coding stop - 5 873.0 0.0 0.0 0.0 0.0 0.0 -1,-6 0.011 17 -2.0 MINOR ENSMUSG00000025907 Rb1cc1 ENSMUST00000162418 - NO_TRANSLATION retained_intron ENSMUSG00000026249 Serpine2 ENSMUST00000153862 - NO_TRANSLATION retained_intron ENSMUSG00000026249 Serpine2 ENSMUST00000189793 ENSMUSP00000140065 TRANSLATION protein_coding start/stop - 5 232.0 0.0 5.0 0.0 218.3 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000026249 Serpine2 ENSMUST00000191529 - NO_TRANSLATION retained_intron ENSMUSG00000026249 Serpine2 ENSMUST00000027467 ENSMUSP00000027467 TRANSLATION protein_coding - CCDS15092.1 1 397.0 0.0 7.66 19.5 360.5 0.0 1,-2 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000026249 Serpine2 ENSMUST00000191026 - NO_TRANSLATION retained_intron ENSMUSG00000026249 Serpine2 ENSMUST00000190724 ENSMUSP00000140255 TRANSLATION protein_coding stop - 5 232.0 0.0 3.5 0.0 182.3 0.0 1,-2 0.0012 5 -2.0 MINOR ENSMUSG00000026017 Carf ENSMUST00000191232 - NO_TRANSLATION retained_intron ENSMUSG00000026017 Carf ENSMUST00000186107 ENSMUSP00000139554 TRANSLATION nonsense_mediated_decay - - 1 255.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000026017 Carf ENSMUST00000186779 - NO_TRANSLATION retained_intron ENSMUSG00000026017 Carf ENSMUST00000180952 ENSMUSP00000137825 TRANSLATION protein_coding - CCDS14989.1 1 689.0 0.0 0.0 0.0 200.7 0.0 -4,-5 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000026017 Carf ENSMUST00000124986 ENSMUSP00000121293 TRANSLATION protein_coding stop - 3 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026017 Carf ENSMUST00000187978 ENSMUSP00000141169 TRANSLATION protein_coding - CCDS14989.1 1 689.0 0.0 0.0 0.0 200.7 0.0 -4,-5 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000026017 Carf ENSMUST00000130075 ENSMUSP00000137867 TRANSLATION nonsense_mediated_decay - - 1 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026017 Carf ENSMUST00000027171 ENSMUSP00000027171 TRANSLATION protein_coding - CCDS78592.1 1 654.0 0.0 0.0 0.0 200.7 0.0 -4,-5 0.3062 - 0.0 ALTERNATIVE:2 ENSMUSG00000026017 Carf ENSMUST00000132949 ENSMUSP00000139878 TRANSLATION nonsense_mediated_decay start - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026017 Carf ENSMUST00000150008 - NO_TRANSLATION retained_intron ENSMUSG00000030768 Disp1 ENSMUST00000003035 ENSMUSP00000003035 TRANSLATION protein_coding - CCDS56661.1 1 1521.0 0.0 0.7 0.0 80.4 11.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000030768 Disp1 ENSMUST00000195372 ENSMUSP00000141747 TRANSLATION protein_coding - CCDS56661.1 1 1521.0 0.0 0.7 0.0 80.4 11.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000030768 Disp1 ENSMUST00000194033 ENSMUSP00000141664 TRANSLATION protein_coding stop - 2 134.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030768 Disp1 ENSMUST00000171366 ENSMUSP00000126742 TRANSLATION protein_coding - CCDS56661.1 1 1521.0 0.0 0.7 0.0 80.4 11.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000030768 Disp1 ENSMUST00000192915 - NO_TRANSLATION retained_intron ENSMUSG00000035131 Brinp3 ENSMUST00000128345 ENSMUSP00000116763 TRANSLATION nonsense_mediated_decay - - 1 90.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0042 - -2.0 MINOR ENSMUSG00000035131 Brinp3 ENSMUST00000074622 ENSMUSP00000074201 TRANSLATION protein_coding - CCDS15351.1 1 766.0 0.0 0.25 24.2 35.6 0.0 2,-3 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000035131 Brinp3 ENSMUST00000132847 ENSMUSP00000118552 TRANSLATION protein_coding stop - 5 250.0 0.0 0.25 0.0 35.6 0.0 2,-3 0.1138 1 -2.0 MINOR ENSMUSG00000035131 Brinp3 ENSMUST00000125331 - NO_TRANSLATION retained_intron ENSMUSG00000035131 Brinp3 ENSMUST00000166814 ENSMUSP00000126074 TRANSLATION protein_coding - CCDS15351.1 1 766.0 0.0 0.25 24.2 35.6 0.0 2,-3 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000044055 Otos ENSMUST00000053144 ENSMUSP00000061683 TRANSLATION protein_coding - CCDS35668.1 1 89.0 0.0 1.0 9.3 128.2 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044055 Otos ENSMUST00000159803 - NO_TRANSLATION retained_intron ENSMUSG00000026393 Nek7 ENSMUST00000187407 ENSMUSP00000140635 TRANSLATION protein_coding - CCDS15332.1 5 302.0 20.0 8.05 36.2 218.1 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000026393 Nek7 ENSMUST00000027642 ENSMUSP00000027642 TRANSLATION protein_coding - CCDS78695.1 1 201.0 20.0 5.05 0.0 138.1 0.0 -4,-5 0.0034 7 7.2 MINOR ENSMUSG00000026393 Nek7 ENSMUST00000191549 - NO_TRANSLATION retained_intron ENSMUSG00000026393 Nek7 ENSMUST00000186017 ENSMUSP00000140903 TRANSLATION protein_coding - CCDS15332.1 1 302.0 20.0 8.05 36.2 218.1 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000042207 Kdm5b ENSMUST00000112197 - NO_TRANSLATION retained_intron ENSMUSG00000042207 Kdm5b ENSMUST00000191572 - NO_TRANSLATION retained_intron ENSMUSG00000042207 Kdm5b ENSMUST00000186128 - NO_TRANSLATION retained_intron ENSMUSG00000042207 Kdm5b ENSMUST00000047714 ENSMUSP00000038138 TRANSLATION protein_coding - CCDS35716.1 1 1544.0 11.0 11.25 6.6 724.1 0.0 -4,-5 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000042207 Kdm5b ENSMUST00000112198 ENSMUSP00000107817 TRANSLATION protein_coding - - 1 1517.0 11.0 11.25 0.0 693.7 0.0 -4,-5 0.2165 19 16.176 MINOR ENSMUSG00000042207 Kdm5b ENSMUST00000133725 - NO_TRANSLATION retained_intron ENSMUSG00000052423 B4galt3 ENSMUST00000125939 - NO_TRANSLATION retained_intron ENSMUSG00000052423 B4galt3 ENSMUST00000138904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052423 B4galt3 ENSMUST00000129985 - NO_TRANSLATION retained_intron ENSMUSG00000052423 B4galt3 ENSMUST00000141114 ENSMUSP00000114560 TRANSLATION protein_coding stop - 3 139.0 0.0 1.05 0.0 0.0 2.0 -4,-2 0.0017 - -2.0 MINOR ENSMUSG00000052423 B4galt3 ENSMUST00000141999 ENSMUSP00000114926 TRANSLATION protein_coding stop - 3 65.0 0.0 0.0 0.0 0.0 2.0 -1,-5 0.0026 - -2.0 MINOR ENSMUSG00000052423 B4galt3 ENSMUST00000132890 - NO_TRANSLATION retained_intron ENSMUSG00000052423 B4galt3 ENSMUST00000151863 ENSMUSP00000142114 TRANSLATION protein_coding stop - 5 13.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052423 B4galt3 ENSMUST00000111313 ENSMUSP00000106945 TRANSLATION protein_coding - CCDS15486.1 1 395.0 3.0 6.14 12.5 293.0 2.0 -1,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000052423 B4galt3 ENSMUST00000064272 ENSMUSP00000066353 TRANSLATION protein_coding - CCDS15486.1 1 395.0 3.0 6.14 12.5 293.0 2.0 -1,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000052423 B4galt3 ENSMUST00000126699 ENSMUSP00000141958 TRANSLATION protein_coding - - 5 173.0 2.0 3.06 0.0 98.4 0.0 -4,-6 0.0 1 2.001 MINOR ENSMUSG00000052423 B4galt3 ENSMUST00000123954 - NO_TRANSLATION retained_intron ENSMUSG00000026581 Sell ENSMUST00000097491 ENSMUSP00000095099 TRANSLATION protein_coding - - 5 387.0 9.0 4.889 0.0 139.5 0.0 -2,-4 0.056 5 14.0 ALTERNATIVE:2 ENSMUSG00000026581 Sell ENSMUST00000192047 ENSMUSP00000142237 TRANSLATION protein_coding - CCDS48421.1 1 336.0 9.0 3.816 0.0 139.6 0.0 -2,-4 0.1005 3 11.852 MINOR ENSMUSG00000026581 Sell ENSMUST00000027871 ENSMUSP00000027871 TRANSLATION protein_coding - CCDS35753.1 1 372.0 9.0 4.816 3.6 139.4 0.0 -2,-4 1.0 4 14.856 PRINCIPAL:2 ENSMUSG00000026581 Sell ENSMUST00000195358 ENSMUSP00000141365 TRANSLATION protein_coding start - 5 100.0 0.0 1.066 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026072 Il1r1 ENSMUST00000195402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026072 Il1r1 ENSMUST00000114795 ENSMUSP00000110443 TRANSLATION protein_coding - CCDS48246.1 1 573.0 0.0 6.57 7.6 164.7 1.0 2,-2 0.9312 1 8.64 ALTERNATIVE:1 ENSMUSG00000026072 Il1r1 ENSMUST00000027241 ENSMUSP00000027241 TRANSLATION protein_coding - CCDS35547.1 1 576.0 0.0 6.57 8.5 164.7 1.0 2,-3 1.0 1 9.0 PRINCIPAL:4 ENSMUSG00000044340 Phlpp1 ENSMUST00000135810 - NO_TRANSLATION retained_intron ENSMUSG00000044340 Phlpp1 ENSMUST00000124895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044340 Phlpp1 ENSMUST00000061047 ENSMUSP00000056530 TRANSLATION protein_coding - CCDS48337.1 1 1687.0 0.0 7.36 0.0 177.2 0.0 -4,-5 1.0 24 12.0 PRINCIPAL:1 ENSMUSG00000040225 Prrc2c ENSMUST00000182149 ENSMUSP00000138548 TRANSLATION protein_coding - - 5 2724.0 0.0 1.26 0.0 181.1 0.0 -4,-5 0.2611 53 3.618 MINOR ENSMUSG00000040225 Prrc2c ENSMUST00000182393 ENSMUSP00000138451 TRANSLATION protein_coding start - 5 1515.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0254 28 -2.0 MINOR ENSMUSG00000040225 Prrc2c ENSMUST00000183223 ENSMUSP00000138698 TRANSLATION protein_coding start - 5 1276.0 0.0 1.43 0.0 0.0 0.0 -4,-5 0.0189 25 -2.0 MINOR ENSMUSG00000040225 Prrc2c ENSMUST00000182660 ENSMUSP00000138433 TRANSLATION protein_coding - CCDS35749.1 5 2846.0 0.0 2.09 0.0 181.1 0.0 -4,-5 1.0 57 6.0 PRINCIPAL:2 ENSMUSG00000040225 Prrc2c ENSMUST00000183286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040225 Prrc2c ENSMUST00000182593 ENSMUSP00000138674 TRANSLATION protein_coding - - 5 2765.0 0.0 2.09 0.0 170.5 0.0 -4,-5 0.2428 57 6.0 ALTERNATIVE:2 ENSMUSG00000040225 Prrc2c ENSMUST00000193937 - NO_TRANSLATION retained_intron ENSMUSG00000040225 Prrc2c ENSMUST00000182331 ENSMUSP00000138556 TRANSLATION protein_coding stop - 5 149.0 0.0 0.0 0.0 174.1 0.0 -4,-5 0.0119 4 -2.0 MINOR ENSMUSG00000040225 Prrc2c ENSMUST00000182308 - NO_TRANSLATION retained_intron ENSMUSG00000040225 Prrc2c ENSMUST00000182448 - NO_TRANSLATION retained_intron ENSMUSG00000040225 Prrc2c ENSMUST00000028016 ENSMUSP00000028016 TRANSLATION protein_coding - - 5 2844.0 0.0 2.09 0.0 170.5 0.0 -4,-5 0.501 57 6.0 ALTERNATIVE:2 ENSMUSG00000040225 Prrc2c ENSMUST00000182535 - NO_TRANSLATION retained_intron ENSMUSG00000040225 Prrc2c ENSMUST00000183011 ENSMUSP00000138609 TRANSLATION protein_coding stop - 1 564.0 0.0 0.0 0.0 162.6 0.0 -4,-5 0.0204 15 -2.0 MINOR ENSMUSG00000040225 Prrc2c ENSMUST00000182288 - NO_TRANSLATION retained_intron ENSMUSG00000009907 Vps4b ENSMUST00000112736 ENSMUSP00000108356 TRANSLATION protein_coding - CCDS15211.1 1 444.0 10.0 9.455 34.9 324.5 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000009907 Vps4b ENSMUST00000126057 - NO_TRANSLATION retained_intron ENSMUSG00000009907 Vps4b ENSMUST00000147705 - NO_TRANSLATION retained_intron ENSMUSG00000009907 Vps4b ENSMUST00000190531 - NO_TRANSLATION retained_intron ENSMUSG00000009907 Vps4b ENSMUST00000094646 ENSMUSP00000092230 TRANSLATION protein_coding - CCDS15211.1 1 444.0 10.0 9.455 34.9 324.5 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000009907 Vps4b ENSMUST00000127606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094410 Zbed6 ENSMUST00000179598 ENSMUSP00000136026 TRANSLATION protein_coding - CCDS56643.1 1 980.0 8.0 0.0 8.1 109.9 0.0 -4,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000026455 Klhl12 ENSMUST00000141458 - NO_TRANSLATION retained_intron ENSMUSG00000026455 Klhl12 ENSMUST00000133721 - NO_TRANSLATION retained_intron ENSMUSG00000026455 Klhl12 ENSMUST00000116528 ENSMUSP00000112227 TRANSLATION protein_coding - CCDS78687.1 5 568.0 0.0 11.75 8.2 497.5 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000026455 Klhl12 ENSMUST00000027725 ENSMUSP00000027725 TRANSLATION protein_coding - CCDS78687.1 1 568.0 0.0 11.75 8.2 497.5 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000026455 Klhl12 ENSMUST00000189981 - NO_TRANSLATION retained_intron ENSMUSG00000026455 Klhl12 ENSMUST00000112232 ENSMUSP00000107851 TRANSLATION protein_coding - CCDS35715.1 1 541.0 0.0 11.0 0.0 443.8 0.0 -4,-6 0.0883 4 7.278 MINOR ENSMUSG00000036104 Rab3gap1 ENSMUST00000186865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036104 Rab3gap1 ENSMUST00000150945 - NO_TRANSLATION retained_intron ENSMUSG00000036104 Rab3gap1 ENSMUST00000131884 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036104 Rab3gap1 ENSMUST00000212506 ENSMUSP00000148357 TRANSLATION protein_coding - - 5 988.0 0.0 0.0 10.2 225.7 0.0 -4,-5 0.817 25 4.787 ALTERNATIVE:1 ENSMUSG00000036104 Rab3gap1 ENSMUST00000037649 ENSMUSP00000042070 TRANSLATION protein_coding - CCDS15249.1 1 981.0 0.0 0.0 10.9 225.7 0.0 -4,-5 1.0 25 5.0 PRINCIPAL:4 ENSMUSG00000036104 Rab3gap1 ENSMUST00000189259 - NO_TRANSLATION retained_intron ENSMUSG00000036104 Rab3gap1 ENSMUST00000142662 - NO_TRANSLATION retained_intron ENSMUSG00000043429 Ccdc185 ENSMUST00000060041 ENSMUSP00000095053 TRANSLATION protein_coding - CCDS15589.1 - 621.0 0.0 0.0 0.0 390.0 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000039224 D1Pas1 ENSMUST00000045108 ENSMUSP00000035261 TRANSLATION protein_coding - CCDS15603.1 - 660.0 17.0 1.0 10.3 280.0 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000005338 Cadm3 ENSMUST00000126963 - NO_TRANSLATION retained_intron ENSMUSG00000005338 Cadm3 ENSMUST00000111220 ENSMUSP00000106851 TRANSLATION protein_coding - CCDS15528.1 1 396.0 0.0 4.9 10.0 137.1 1.0 3,-2 1.0 11 11.0 PRINCIPAL:2 ENSMUSG00000005338 Cadm3 ENSMUST00000157032 - NO_TRANSLATION retained_intron ENSMUSG00000005338 Cadm3 ENSMUST00000136540 - NO_TRANSLATION retained_intron ENSMUSG00000005338 Cadm3 ENSMUST00000005470 ENSMUSP00000005470 TRANSLATION protein_coding - - 5 430.0 0.0 4.9 6.9 137.1 1.0 3,-2 0.6647 11 9.968 ALTERNATIVE:1 ENSMUSG00000104217 Gm37988 ENSMUST00000155020 ENSMUSP00000136108 TRANSLATION nonsense_mediated_decay,RT - - 5 62.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.5842 - -2.0 PRINCIPAL:1 ENSMUSG00000026405 C4bp ENSMUST00000137276 ENSMUSP00000121185 TRANSLATION protein_coding stop - 5 256.0 0.0 4.5 0.0 106.0 0.0 -4,0 0.0007 6 -2.0 MINOR ENSMUSG00000026405 C4bp ENSMUST00000027657 ENSMUSP00000027657 TRANSLATION protein_coding - CCDS35700.1 1 469.0 0.0 9.55 0.0 215.1 0.0 -4,0 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000026405 C4bp ENSMUST00000171642 ENSMUSP00000130533 TRANSLATION protein_coding start/stop - 3 199.0 0.0 4.75 0.0 95.8 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000026405 C4bp ENSMUST00000190624 - NO_TRANSLATION retained_intron ENSMUSG00000060985 Tdrd5 ENSMUST00000141760 ENSMUSP00000137156 TRANSLATION protein_coding stop - 3 195.0 0.0 1.0 0.0 40.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060985 Tdrd5 ENSMUST00000193755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060985 Tdrd5 ENSMUST00000121146 ENSMUSP00000137298 TRANSLATION protein_coding - CCDS56647.1 1 1040.0 0.0 2.5 0.1 178.1 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000060985 Tdrd5 ENSMUST00000167528 ENSMUSP00000137182 TRANSLATION protein_coding - - 5 963.0 0.0 2.5 0.1 145.9 0.0 -4,-5 0.0633 6 10.068 MINOR ENSMUSG00000060985 Tdrd5 ENSMUST00000148277 - NO_TRANSLATION retained_intron ENSMUSG00000026484 Rnf2 ENSMUST00000188871 - NO_TRANSLATION retained_intron ENSMUSG00000026484 Rnf2 ENSMUST00000190070 ENSMUSP00000139676 TRANSLATION protein_coding start - 5 211.0 0.0 1.5 0.0 52.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026484 Rnf2 ENSMUST00000187991 ENSMUSP00000140299 TRANSLATION protein_coding stop - 3 73.0 5.0 1.75 0.0 35.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026484 Rnf2 ENSMUST00000186415 ENSMUSP00000140594 TRANSLATION protein_coding - - 5 264.0 6.0 4.58 0.0 147.6 0.0 -4,-5 0.0043 3 13.932 MINOR ENSMUSG00000026484 Rnf2 ENSMUST00000187048 ENSMUSP00000140896 TRANSLATION protein_coding - CCDS15362.1 1 336.0 8.0 5.58 33.0 157.1 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000026484 Rnf2 ENSMUST00000185945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026484 Rnf2 ENSMUST00000076110 ENSMUSP00000075476 TRANSLATION protein_coding - CCDS15362.1 1 336.0 8.0 5.58 33.0 157.1 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000026580 Selp ENSMUST00000161152 ENSMUSP00000124231 TRANSLATION nonsense_mediated_decay start - 1 46.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026580 Selp ENSMUST00000160000 - NO_TRANSLATION retained_intron ENSMUSG00000026580 Selp ENSMUST00000162746 ENSMUSP00000123924 TRANSLATION protein_coding - CCDS48422.1 1 768.0 7.0 7.532 6.2 367.6 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000026580 Selp ENSMUST00000162102 - NO_TRANSLATION retained_intron ENSMUSG00000026580 Selp ENSMUST00000161020 - NO_TRANSLATION retained_intron ENSMUSG00000070034 Sp110 ENSMUST00000151690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070034 Sp110 ENSMUST00000150114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070034 Sp110 ENSMUST00000143363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070034 Sp110 ENSMUST00000093508 ENSMUSP00000091226 TRANSLATION protein_coding - CCDS35637.1 1 445.0 0.0 3.85 0.1 226.4 0.0 -4,-6 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000070034 Sp110 ENSMUST00000186740 - NO_TRANSLATION retained_intron ENSMUSG00000070034 Sp110 ENSMUST00000130727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070034 Sp110 ENSMUST00000152399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070034 Sp110 ENSMUST00000128339 - NO_TRANSLATION retained_intron ENSMUSG00000070034 Sp110 ENSMUST00000131950 - NO_TRANSLATION retained_intron ENSMUSG00000051590 Map3k19 ENSMUST00000187653 ENSMUSP00000140930 TRANSLATION protein_coding start - 5 1211.0 19.0 2.21 0.0 219.6 0.0 -4,-5 0.1499 - -2.0 MINOR ENSMUSG00000051590 Map3k19 ENSMUST00000061512 ENSMUSP00000056254 TRANSLATION protein_coding - CCDS48347.1 5 1311.0 19.0 2.21 0.0 219.6 0.0 -4,-5 0.3536 - 16.248 MINOR ENSMUSG00000051590 Map3k19 ENSMUST00000189398 ENSMUSP00000140449 TRANSLATION protein_coding start - 5 467.0 11.0 1.48 0.0 190.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051590 Map3k19 ENSMUST00000191333 ENSMUSP00000141029 TRANSLATION protein_coding start - 5 515.0 19.0 2.21 0.0 219.6 0.0 -4,-5 0.0721 - -2.0 MINOR ENSMUSG00000051590 Map3k19 ENSMUST00000208183 ENSMUSP00000146463 TRANSLATION protein_coding - - 5 1515.0 19.0 2.21 0.0 248.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000051590 Map3k19 ENSMUST00000238383 ENSMUSP00000158583 TRANSLATION protein_coding start - - 465.0 13.0 1.68 0.0 202.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047369 Dnah14 ENSMUST00000193365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047369 Dnah14 ENSMUST00000238412 ENSMUSP00000158787 TRANSLATION protein_coding - - - 4596.0 48.0 31.24425 0.0 1892.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000047369 Dnah14 ENSMUST00000195808 - NO_TRANSLATION retained_intron ENSMUSG00000047369 Dnah14 ENSMUST00000160345 - NO_TRANSLATION retained_intron ENSMUSG00000047369 Dnah14 ENSMUST00000194470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047369 Dnah14 ENSMUST00000097446 - NO_TRANSLATION retained_intron ENSMUSG00000047369 Dnah14 ENSMUST00000160793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047369 Dnah14 ENSMUST00000208001 ENSMUSP00000146843 TRANSLATION protein_coding - - 5 4489.0 42.0 30.60425 0.0 1849.1 0.0 -4,-5 0.4758 - 10.098 MINOR ENSMUSG00000047369 Dnah14 ENSMUST00000192602 ENSMUSP00000146744 TRANSLATION protein_coding start - 3 133.0 0.0 0.265 0.0 100.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000047369 Dnah14 ENSMUST00000195458 ENSMUSP00000146735 TRANSLATION protein_coding start - 3 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0373 - -2.0 MINOR ENSMUSG00000025909 Sntg1 ENSMUST00000144593 ENSMUSP00000123632 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025909 Sntg1 ENSMUST00000140295 ENSMUSP00000118101 TRANSLATION protein_coding - CCDS35509.1 1 517.0 0.0 2.796 7.1 64.2 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000025909 Sntg1 ENSMUST00000191683 ENSMUSP00000141839 TRANSLATION protein_coding - CCDS69860.1 1 516.0 0.0 2.796 7.1 51.9 0.0 -4,-5 0.9211 2 12.848 MINOR ENSMUSG00000025909 Sntg1 ENSMUST00000140302 ENSMUSP00000117397 TRANSLATION nonsense_mediated_decay - - 1 187.0 0.0 2.796 0.0 64.2 0.0 -4,-5 0.013 - -2.0 MINOR ENSMUSG00000025909 Sntg1 ENSMUST00000115484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025909 Sntg1 ENSMUST00000126083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025909 Sntg1 ENSMUST00000135046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025909 Sntg1 ENSMUST00000134075 - NO_TRANSLATION retained_intron ENSMUSG00000025909 Sntg1 ENSMUST00000132064 ENSMUSP00000122134 TRANSLATION protein_coding - CCDS69860.1 5 516.0 0.0 2.796 7.1 51.9 0.0 -4,-5 0.9211 2 12.848 MINOR ENSMUSG00000025909 Sntg1 ENSMUST00000194098 - NO_TRANSLATION retained_intron ENSMUSG00000025909 Sntg1 ENSMUST00000115488 ENSMUSP00000111151 TRANSLATION protein_coding - CCDS35509.1 2 517.0 0.0 2.796 7.1 64.2 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000042251 Pm20d1 ENSMUST00000132450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042251 Pm20d1 ENSMUST00000112393 ENSMUSP00000108012 TRANSLATION protein_coding - CCDS15274.1 1 503.0 3.0 11.85 2.3 175.3 0.0 3,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000042251 Pm20d1 ENSMUST00000152989 ENSMUSP00000116936 TRANSLATION protein_coding start - 3 99.0 1.0 2.75 0.0 30.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042251 Pm20d1 ENSMUST00000048660 ENSMUSP00000046079 TRANSLATION protein_coding - CCDS15274.1 1 503.0 3.0 11.85 2.3 175.3 0.0 3,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000089675 Ugt1a8 ENSMUST00000113139 ENSMUSP00000108764 TRANSLATION protein_coding - - 5 530.0 19.0 5.0 8.7 778.7 0.0 3,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000040723 Rcsd1 ENSMUST00000040357 ENSMUSP00000043724 TRANSLATION protein_coding - CCDS48426.1 1 412.0 0.0 0.0 0.1 104.4 0.0 -4,-5 0.2259 9 0.0 ALTERNATIVE:2 ENSMUSG00000040723 Rcsd1 ENSMUST00000097474 ENSMUSP00000095082 TRANSLATION protein_coding - CCDS48425.1 1 382.0 0.0 0.0 0.1 104.4 0.0 -4,-5 1.0 9 0.0 PRINCIPAL:2 ENSMUSG00000040723 Rcsd1 ENSMUST00000193714 ENSMUSP00000141913 TRANSLATION protein_coding stop - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040723 Rcsd1 ENSMUST00000192566 - NO_TRANSLATION retained_intron ENSMUSG00000040723 Rcsd1 ENSMUST00000195045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062590 Armc9 ENSMUST00000186509 ENSMUSP00000139539 TRANSLATION protein_coding stop - 3 107.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0089 - -2.0 MINOR ENSMUSG00000062590 Armc9 ENSMUST00000126579 ENSMUSP00000116445 TRANSLATION nonsense_mediated_decay start - 5 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0092 - -2.0 MINOR ENSMUSG00000062590 Armc9 ENSMUST00000131412 ENSMUSP00000117267 TRANSLATION protein_coding - CCDS48303.1 1 666.0 0.0 0.0 4.0 0.0 0.0 -4,-5 0.6564 7 1.818 ALTERNATIVE:2 ENSMUSG00000062590 Armc9 ENSMUST00000153389 - NO_TRANSLATION retained_intron ENSMUSG00000062590 Armc9 ENSMUST00000135973 - NO_TRANSLATION retained_intron ENSMUSG00000062590 Armc9 ENSMUST00000155168 - NO_TRANSLATION retained_intron ENSMUSG00000062590 Armc9 ENSMUST00000156675 ENSMUSP00000119749 TRANSLATION protein_coding start - 3 145.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0127 2 -2.0 MINOR ENSMUSG00000062590 Armc9 ENSMUST00000153653 - NO_TRANSLATION retained_intron ENSMUSG00000062590 Armc9 ENSMUST00000123618 - NO_TRANSLATION retained_intron ENSMUSG00000062590 Armc9 ENSMUST00000027434 ENSMUSP00000027434 TRANSLATION protein_coding - CCDS15118.1 1 817.0 0.0 0.0 4.3 0.0 0.0 -4,-5 0.938 9 2.0 ALTERNATIVE:2 ENSMUSG00000062590 Armc9 ENSMUST00000113309 ENSMUSP00000108934 TRANSLATION protein_coding - CCDS78642.1 1 818.0 0.0 0.0 4.3 0.0 0.0 -4,-5 1.0 9 2.0 PRINCIPAL:4 ENSMUSG00000062590 Armc9 ENSMUST00000150059 ENSMUSP00000116908 TRANSLATION protein_coding start/stop - 3 254.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0267 2 -2.0 MINOR ENSMUSG00000062590 Armc9 ENSMUST00000134858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005501 Usp40 ENSMUST00000189586 - NO_TRANSLATION retained_intron ENSMUSG00000005501 Usp40 ENSMUST00000189409 ENSMUSP00000140240 TRANSLATION nonsense_mediated_decay start - 1 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005501 Usp40 ENSMUST00000190446 - NO_TRANSLATION retained_intron ENSMUSG00000005501 Usp40 ENSMUST00000040783 ENSMUSP00000038533 TRANSLATION protein_coding - CCDS15137.1 1 1146.0 4.0 3.84 0.0 113.7 0.0 -4,-5 0.3258 16 16.0 MINOR ENSMUSG00000005501 Usp40 ENSMUST00000187758 ENSMUSP00000140107 TRANSLATION protein_coding - CCDS78645.1 1 1235.0 4.0 3.84 6.3 113.7 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000005501 Usp40 ENSMUST00000187871 - NO_TRANSLATION retained_intron ENSMUSG00000005501 Usp40 ENSMUST00000188332 ENSMUSP00000140574 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.5 0.0 24.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005501 Usp40 ENSMUST00000186670 - NO_TRANSLATION retained_intron ENSMUSG00000005501 Usp40 ENSMUST00000186315 - NO_TRANSLATION retained_intron ENSMUSG00000025912 Mybl1 ENSMUST00000160451 - NO_TRANSLATION retained_intron ENSMUSG00000025912 Mybl1 ENSMUST00000160022 - NO_TRANSLATION retained_intron ENSMUSG00000025912 Mybl1 ENSMUST00000115468 ENSMUSP00000111128 TRANSLATION protein_coding - CCDS69861.1 5 691.0 0.0 4.264 15.6 554.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000025912 Mybl1 ENSMUST00000188212 ENSMUSP00000139818 TRANSLATION protein_coding start/stop - 5 267.0 0.0 3.514 0.0 226.2 0.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000025912 Mybl1 ENSMUST00000088658 ENSMUSP00000086034 TRANSLATION protein_coding - CCDS35510.1 1 751.0 0.0 4.264 14.5 554.8 0.0 -4,-5 0.9158 - 11.7 ALTERNATIVE:1 ENSMUSG00000026304 Rab17 ENSMUST00000027529 ENSMUSP00000027529 TRANSLATION protein_coding - CCDS15156.1 1 214.0 19.0 4.5 9.1 186.7 0.0 -4,-7 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000026304 Rab17 ENSMUST00000135819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026304 Rab17 ENSMUST00000131428 ENSMUSP00000122178 TRANSLATION protein_coding - CCDS15156.1 1 214.0 19.0 4.5 9.1 186.7 0.0 -4,-7 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000026304 Rab17 ENSMUST00000130042 ENSMUSP00000114240 TRANSLATION protein_coding stop - 3 145.0 16.0 3.0 0.0 143.2 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000026304 Rab17 ENSMUST00000128226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026124 Cfc1 ENSMUST00000027298 ENSMUSP00000027298 TRANSLATION protein_coding - CCDS14869.1 1 202.0 4.0 2.0 0.3 49.9 0.0 -3,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026021 Sumo1 ENSMUST00000123857 - NO_TRANSLATION retained_intron ENSMUSG00000026021 Sumo1 ENSMUST00000191158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026021 Sumo1 ENSMUST00000091374 ENSMUSP00000088935 TRANSLATION protein_coding - CCDS35586.1 1 101.0 0.0 3.0 34.9 76.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026021 Sumo1 ENSMUST00000185265 ENSMUSP00000140729 TRANSLATION protein_coding - - 3 75.0 0.0 2.25 0.7 37.4 0.0 -4,-5 0.0003 1 7.428 MINOR ENSMUSG00000025779 Ly96 ENSMUST00000026881 ENSMUSP00000026881 TRANSLATION protein_coding - CCDS14832.1 1 160.0 0.0 4.75 8.4 48.9 0.0 0,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000025779 Ly96 ENSMUST00000191260 - NO_TRANSLATION retained_intron ENSMUSG00000025779 Ly96 ENSMUST00000190366 ENSMUSP00000140411 TRANSLATION protein_coding - CCDS78550.1 1 142.0 0.0 4.25 1.1 26.6 0.0 0,-3 0.0247 2 8.304 MINOR ENSMUSG00000026027 Stradb ENSMUST00000114296 ENSMUSP00000109935 TRANSLATION protein_coding - - 1 209.0 16.0 3.69 0.0 56.1 0.0 -4,-6 0.0 - 6.15 MINOR ENSMUSG00000026027 Stradb ENSMUST00000152318 ENSMUSP00000137790 TRANSLATION protein_coding start - 5 129.0 4.0 2.962 0.0 61.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026027 Stradb ENSMUST00000027185 ENSMUSP00000027185 TRANSLATION protein_coding - CCDS14981.1 1 418.0 20.0 6.294 15.2 122.4 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000026027 Stradb ENSMUST00000147637 - NO_TRANSLATION retained_intron ENSMUSG00000026027 Stradb ENSMUST00000123301 ENSMUSP00000138036 TRANSLATION nonsense_mediated_decay - - 1 189.0 16.0 3.45 0.0 56.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026027 Stradb ENSMUST00000123965 - NO_TRANSLATION retained_intron ENSMUSG00000026027 Stradb ENSMUST00000153990 ENSMUSP00000137724 TRANSLATION nonsense_mediated_decay - - 1 104.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026245 Farsb ENSMUST00000190441 ENSMUSP00000140934 TRANSLATION protein_coding stop - 3 206.0 0.0 5.33 0.0 25.1 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000026245 Farsb ENSMUST00000170217 ENSMUSP00000129828 TRANSLATION protein_coding - CCDS15084.1 1 589.0 0.0 16.08 29.9 143.7 0.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000026245 Farsb ENSMUST00000189529 ENSMUSP00000140001 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 1.25 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026245 Farsb ENSMUST00000068333 ENSMUSP00000069508 TRANSLATION protein_coding - CCDS15084.1 1 589.0 0.0 16.08 29.9 143.7 0.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000026245 Farsb ENSMUST00000189931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026245 Farsb ENSMUST00000188247 ENSMUSP00000139933 TRANSLATION protein_coding stop - 5 237.0 0.0 7.25 0.0 93.9 0.0 -4,-5 0.0004 8 -2.0 MINOR ENSMUSG00000026245 Farsb ENSMUST00000191021 - NO_TRANSLATION retained_intron ENSMUSG00000042197 Zfp451 ENSMUST00000151055 ENSMUSP00000141714 TRANSLATION nonsense_mediated_decay start - 3 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000042197 Zfp451 ENSMUST00000115167 ENSMUSP00000110821 TRANSLATION protein_coding start/stop - 3 224.0 9.0 0.25 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042197 Zfp451 ENSMUST00000140163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042197 Zfp451 ENSMUST00000019861 ENSMUSP00000019861 TRANSLATION protein_coding - CCDS14865.1 1 1056.0 38.0 0.946 0.4 0.0 0.0 -4,-5 0.2116 7 12.0 MINOR ENSMUSG00000042197 Zfp451 ENSMUST00000125723 - NO_TRANSLATION retained_intron ENSMUSG00000042197 Zfp451 ENSMUST00000194656 ENSMUSP00000141813 TRANSLATION protein_coding stop - 5 244.0 10.0 0.88 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000042197 Zfp451 ENSMUST00000139143 ENSMUSP00000137992 TRANSLATION nonsense_mediated_decay - - 1 93.0 0.0 0.88 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000042197 Zfp451 ENSMUST00000044455 ENSMUSP00000044372 TRANSLATION protein_coding - CCDS69873.1 1 559.0 0.0 0.88 8.0 34.9 0.0 -4,-5 1.0 2 14.58 PRINCIPAL:1 ENSMUSG00000042197 Zfp451 ENSMUST00000130376 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026582 Sele ENSMUST00000027874 ENSMUSP00000027874 TRANSLATION protein_coding - - 1 612.0 9.0 8.425 2.0 311.1 0.0 4,-1 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000044854 1700056E22Rik ENSMUST00000050306 ENSMUSP00000055787 TRANSLATION protein_coding - CCDS56665.1 - 234.0 0.0 0.0 0.4 0.0 0.0 -4,0 0.8874 - 0.0 PRINCIPAL:1 ENSMUSG00000044854 1700056E22Rik ENSMUST00000193919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045648 Vwc2l ENSMUST00000159205 - NO_TRANSLATION retained_intron ENSMUSG00000045648 Vwc2l ENSMUST00000053922 ENSMUSP00000058142 TRANSLATION protein_coding - CCDS15028.1 1 222.0 0.0 3.93 22.3 26.8 0.0 1,-4 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000045648 Vwc2l ENSMUST00000162182 ENSMUSP00000123819 TRANSLATION protein_coding - - 1 175.0 0.0 3.33 0.8 26.8 0.0 1,-4 0.0767 2 10.8 MINOR ENSMUSG00000045648 Vwc2l ENSMUST00000161937 ENSMUSP00000125014 TRANSLATION protein_coding - CCDS78606.1 1 139.0 0.0 1.6 4.0 0.0 0.0 1,-4 0.0814 1 1.902 MINOR ENSMUSG00000026639 Lamb3 ENSMUST00000159955 ENSMUSP00000123875 TRANSLATION protein_coding - CCDS15637.1 1 1168.0 0.0 7.84 6.7 363.1 0.0 3,-2 1.0 31 14.0 PRINCIPAL:1 ENSMUSG00000026639 Lamb3 ENSMUST00000016315 ENSMUSP00000016315 TRANSLATION protein_coding - CCDS15637.1 1 1168.0 0.0 7.84 6.7 363.1 0.0 3,-2 1.0 31 14.0 PRINCIPAL:1 ENSMUSG00000026639 Lamb3 ENSMUST00000194407 - NO_TRANSLATION retained_intron ENSMUSG00000026639 Lamb3 ENSMUST00000161526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026639 Lamb3 ENSMUST00000162977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026639 Lamb3 ENSMUST00000194677 ENSMUSP00000142053 TRANSLATION protein_coding - CCDS15637.1 1 1168.0 0.0 7.84 6.7 363.1 0.0 3,-2 1.0 31 14.0 PRINCIPAL:1 ENSMUSG00000026639 Lamb3 ENSMUST00000162180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026639 Lamb3 ENSMUST00000193128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026639 Lamb3 ENSMUST00000192322 ENSMUSP00000141302 TRANSLATION protein_coding stop - 5 244.0 0.0 3.1 0.0 173.9 0.0 3,-2 0.0005 6 -2.0 MINOR ENSMUSG00000006538 Ihh ENSMUST00000189364 - NO_TRANSLATION retained_intron ENSMUSG00000006538 Ihh ENSMUST00000164097 ENSMUSP00000128056 TRANSLATION protein_coding - - 1 411.0 11.0 2.4 3.2 529.1 0.0 4,-1 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000026626 Ppp2r5a ENSMUST00000067976 ENSMUSP00000070726 TRANSLATION protein_coding - CCDS15620.1 1 486.0 0.0 10.83 0.1 638.5 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000026626 Ppp2r5a ENSMUST00000195605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026626 Ppp2r5a ENSMUST00000191925 ENSMUSP00000141288 TRANSLATION nonsense_mediated_decay start - 3 60.0 0.0 1.75 0.0 78.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026626 Ppp2r5a ENSMUST00000194832 - NO_TRANSLATION retained_intron ENSMUSG00000026626 Ppp2r5a ENSMUST00000191920 - NO_TRANSLATION retained_intron ENSMUSG00000026626 Ppp2r5a ENSMUST00000192334 - NO_TRANSLATION retained_intron ENSMUSG00000026626 Ppp2r5a ENSMUST00000194953 - NO_TRANSLATION retained_intron ENSMUSG00000026626 Ppp2r5a ENSMUST00000195859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026018 Ica1l ENSMUST00000191251 ENSMUSP00000140520 TRANSLATION protein_coding - CCDS14987.1 1 431.0 0.0 5.75 0.0 445.1 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000026018 Ica1l ENSMUST00000187364 - NO_TRANSLATION retained_intron ENSMUSG00000026018 Ica1l ENSMUST00000186970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026018 Ica1l ENSMUST00000185891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026018 Ica1l ENSMUST00000027172 ENSMUSP00000027172 TRANSLATION protein_coding - CCDS14987.1 1 431.0 0.0 5.75 0.0 445.1 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000026018 Ica1l ENSMUST00000189776 ENSMUSP00000141103 TRANSLATION protein_coding - - 5 439.0 0.0 5.75 0.8 413.6 0.0 -4,-5 0.0685 3 10.11 MINOR ENSMUSG00000090145 Ugt1a6b ENSMUST00000113137 ENSMUSP00000108762 TRANSLATION protein_coding - CCDS48313.1 3 531.0 19.0 5.0 8.3 762.1 1.0 4,-1 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000090145 Ugt1a6b ENSMUST00000113138 ENSMUSP00000108763 TRANSLATION protein_coding - CCDS48313.1 5 531.0 19.0 5.0 8.3 762.1 1.0 4,-1 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000026321 Tnfrsf11a ENSMUST00000187812 - NO_TRANSLATION retained_intron ENSMUSG00000026321 Tnfrsf11a ENSMUST00000187658 - NO_TRANSLATION retained_intron ENSMUSG00000026321 Tnfrsf11a ENSMUST00000027559 ENSMUSP00000027559 TRANSLATION protein_coding - CCDS15207.1 1 625.0 0.0 5.27 0.1 22.9 0.0 2,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000025939 Ube2w ENSMUST00000182080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025939 Ube2w ENSMUST00000136455 - NO_TRANSLATION retained_intron ENSMUSG00000025939 Ube2w ENSMUST00000133639 ENSMUSP00000121573 TRANSLATION nonsense_mediated_decay start - 5 79.0 0.0 2.198 0.0 48.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025939 Ube2w ENSMUST00000117146 ENSMUSP00000112741 TRANSLATION protein_coding - - 1 151.0 0.0 4.25 22.4 117.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025939 Ube2w ENSMUST00000182554 ENSMUSP00000138110 TRANSLATION protein_coding - - 1 154.0 0.0 2.0 0.0 42.6 0.0 -4,-5 0.0106 - 3.018 MINOR ENSMUSG00000025939 Ube2w ENSMUST00000132919 - NO_TRANSLATION retained_intron ENSMUSG00000114299 Gm47791 ENSMUST00000223838 ENSMUSP00000152892 TRANSLATION protein_coding - - - 139.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5812 - 0.0 PRINCIPAL:1 ENSMUSG00000046300 Or9s27 ENSMUST00000190505 ENSMUSP00000150943 TRANSLATION protein_coding - CCDS15172.1 3 321.0 0.0 1.0 4.9 158.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000046300 Or9s27 ENSMUST00000062964 ENSMUSP00000060291 TRANSLATION protein_coding - CCDS15172.1 - 321.0 0.0 1.0 4.9 158.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026333 Gin1 ENSMUST00000138142 ENSMUSP00000137741 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0077 - -2.0 MINOR ENSMUSG00000026333 Gin1 ENSMUST00000112842 ENSMUSP00000108461 TRANSLATION protein_coding - - 1 118.0 1.0 0.25 0.0 0.0 0.0 -4,-6 0.0062 - 1.929 MINOR ENSMUSG00000026333 Gin1 ENSMUST00000027571 ENSMUSP00000027571 TRANSLATION protein_coding - CCDS78662.1 1 429.0 1.0 1.05 0.0 0.0 0.0 -4,-6 0.1012 - 4.911 MINOR ENSMUSG00000026333 Gin1 ENSMUST00000188101 - NO_TRANSLATION retained_intron ENSMUSG00000026333 Gin1 ENSMUST00000189031 ENSMUSP00000141037 TRANSLATION nonsense_mediated_decay start - 3 61.0 1.0 0.25 0.0 0.0 0.0 -4,-6 0.0062 - -2.0 MINOR ENSMUSG00000026333 Gin1 ENSMUST00000112844 ENSMUSP00000108464 TRANSLATION protein_coding - CCDS35679.1 1 518.0 3.0 1.61 10.3 0.0 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026333 Gin1 ENSMUST00000122925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026574 Dpt ENSMUST00000027861 ENSMUSP00000027861 TRANSLATION protein_coding - CCDS15437.1 1 201.0 0.0 3.75 20.9 118.7 0.0 4,-1 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000026095 Asnsd1 ENSMUST00000027264 ENSMUSP00000027264 TRANSLATION protein_coding - CCDS14954.1 1 627.0 16.0 1.8 0.4 38.4 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000026095 Asnsd1 ENSMUST00000123519 ENSMUSP00000139025 TRANSLATION protein_coding - CCDS69888.1 1 150.0 3.0 1.8 1.0 33.2 0.0 -3,-6 0.1785 2 11.19 MINOR ENSMUSG00000026095 Asnsd1 ENSMUST00000154402 ENSMUSP00000120873 TRANSLATION protein_coding stop - 2 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026095 Asnsd1 ENSMUST00000136468 - NO_TRANSLATION retained_intron ENSMUSG00000026095 Asnsd1 ENSMUST00000147021 ENSMUSP00000137676 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000026605 Cenpf ENSMUST00000165962 ENSMUSP00000132759 TRANSLATION protein_coding stop - 1 952.0 0.0 0.0 0.0 435.1 0.0 -4,-5 0.0084 11 -2.0 MINOR ENSMUSG00000026605 Cenpf ENSMUST00000194624 - NO_TRANSLATION retained_intron ENSMUSG00000026605 Cenpf ENSMUST00000194165 - NO_TRANSLATION retained_intron ENSMUSG00000026605 Cenpf ENSMUST00000165798 ENSMUSP00000132430 TRANSLATION protein_coding start/stop - 3 119.0 0.0 0.0 0.0 51.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026605 Cenpf ENSMUST00000165663 ENSMUSP00000130308 TRANSLATION nonsense_mediated_decay - - 3 88.0 0.0 0.0 0.0 114.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026605 Cenpf ENSMUST00000171929 ENSMUSP00000129738 TRANSLATION protein_coding - CCDS35820.2 5 2997.0 0.0 0.0 0.0 899.8 0.0 -4,-5 1.0 23 6.0 PRINCIPAL:1 ENSMUSG00000041779 Tram2 ENSMUST00000187210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041779 Tram2 ENSMUST00000037998 ENSMUSP00000047992 TRANSLATION protein_coding - CCDS14846.1 1 370.0 0.0 9.0 30.7 156.7 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000033898 Cfhr2 ENSMUST00000239380 ENSMUSP00000159242 TRANSLATION protein_coding - - - 332.0 0.0 5.0 0.1 126.0 0.0 3,-2 0.83 - 8.0 PRINCIPAL:4 ENSMUSG00000033898 Cfhr2 ENSMUST00000194186 ENSMUSP00000142033 TRANSLATION protein_coding - - 1 303.0 0.0 4.4 0.0 90.8 0.0 3,-2 0.0071 1 6.0 MINOR ENSMUSG00000033898 Cfhr2 ENSMUST00000094489 ENSMUSP00000092065 TRANSLATION protein_coding - CCDS15339.1 1 332.0 0.0 5.0 0.1 107.9 0.0 3,-2 0.8003 1 7.4 ALTERNATIVE:2 ENSMUSG00000066671 Or6y1 ENSMUST00000085861 ENSMUSP00000083023 TRANSLATION protein_coding - CCDS48458.1 - 325.0 0.0 1.0 3.8 172.3 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000066671 Or6y1 ENSMUST00000194229 ENSMUSP00000141919 TRANSLATION protein_coding - CCDS48458.1 3 325.0 0.0 1.0 3.8 172.3 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000049528 Or6n1 ENSMUST00000060693 ENSMUSP00000051323 TRANSLATION protein_coding - CCDS15537.1 - 312.0 0.0 1.0 12.5 220.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049528 Or6n1 ENSMUST00000216346 ENSMUSP00000149257 TRANSLATION protein_coding - CCDS15537.1 2 312.0 0.0 1.0 12.5 220.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061815 Rufy4 ENSMUST00000080167 ENSMUSP00000079062 TRANSLATION protein_coding - CCDS15039.1 1 479.0 8.0 1.932 0.0 28.7 0.0 -4,-2 0.0501 - 14.556 MINOR ENSMUSG00000061815 Rufy4 ENSMUST00000127134 ENSMUSP00000115873 TRANSLATION protein_coding - CCDS48289.1 1 563.0 8.0 3.432 0.4 31.0 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000026365 Cfh ENSMUST00000192880 ENSMUSP00000141209 TRANSLATION protein_coding - - 5 707.0 0.0 12.025 0.0 301.8 0.0 -2,-6 0.002 21 0.0 MINOR ENSMUSG00000026365 Cfh ENSMUST00000066859 ENSMUSP00000066677 TRANSLATION protein_coding - - 1 1234.0 0.0 19.855 2.6 540.9 0.0 3,-2 1.0 37 8.802 PRINCIPAL:2 ENSMUSG00000026365 Cfh ENSMUST00000194688 - NO_TRANSLATION retained_intron ENSMUSG00000026365 Cfh ENSMUST00000111976 ENSMUSP00000107607 TRANSLATION protein_coding - CCDS48388.1 1 1252.0 0.0 19.955 0.0 540.9 0.0 -2,-6 0.6291 37 8.0 ALTERNATIVE:2 ENSMUSG00000026365 Cfh ENSMUST00000111977 ENSMUSP00000107608 TRANSLATION protein_coding - - 1 1195.0 0.0 18.955 0.0 507.6 0.0 -2,-6 0.1778 34 5.402 MINOR ENSMUSG00000026365 Cfh ENSMUST00000192919 ENSMUSP00000141634 TRANSLATION protein_coding start - 5 837.0 0.0 13.4 0.0 358.9 0.0 -4,-5 0.0047 22 -2.0 MINOR ENSMUSG00000026365 Cfh ENSMUST00000148225 - NO_TRANSLATION retained_intron ENSMUSG00000026365 Cfh ENSMUST00000123238 ENSMUSP00000115166 TRANSLATION nonsense_mediated_decay - - 1 1110.0 0.0 18.055 0.0 500.6 0.0 3,-2 0.1019 35 -2.0 MINOR ENSMUSG00000026433 Rab29 ENSMUST00000187084 - NO_TRANSLATION retained_intron ENSMUSG00000026433 Rab29 ENSMUST00000112386 ENSMUSP00000108005 TRANSLATION protein_coding - CCDS15276.1 1 204.0 16.0 4.1 22.9 154.2 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000026433 Rab29 ENSMUST00000125925 ENSMUSP00000137659 TRANSLATION nonsense_mediated_decay - - 1 46.0 8.0 1.0 0.0 40.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026433 Rab29 ENSMUST00000027693 ENSMUSP00000027693 TRANSLATION protein_coding - CCDS15276.1 1 204.0 16.0 4.1 22.9 154.2 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000026566 Mpzl1 ENSMUST00000193023 ENSMUSP00000141463 TRANSLATION protein_coding stop - 1 248.0 0.0 4.23 0.0 74.1 3.0 2,-3 0.0765 1 -2.0 MINOR ENSMUSG00000026566 Mpzl1 ENSMUST00000193172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026566 Mpzl1 ENSMUST00000068705 ENSMUSP00000070343 TRANSLATION protein_coding - CCDS35758.1 1 209.0 0.0 4.245 3.2 74.1 3.0 2,-3 0.6278 1 12.724 MINOR ENSMUSG00000026566 Mpzl1 ENSMUST00000195410 ENSMUSP00000141791 TRANSLATION protein_coding start - 3 126.0 0.0 2.705 0.0 61.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000026566 Mpzl1 ENSMUST00000191818 ENSMUSP00000141361 TRANSLATION protein_coding - - 1 183.0 0.0 4.245 0.0 74.1 3.0 -4,-7 0.0261 1 11.466 MINOR ENSMUSG00000026566 Mpzl1 ENSMUST00000194437 ENSMUSP00000142164 TRANSLATION protein_coding - CCDS83623.1 3 119.0 0.0 2.0305 1.0 0.0 0.0 2,-3 0.0449 1 1.038 MINOR ENSMUSG00000026566 Mpzl1 ENSMUST00000194829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026566 Mpzl1 ENSMUST00000192716 - NO_TRANSLATION retained_intron ENSMUSG00000026566 Mpzl1 ENSMUST00000193948 ENSMUSP00000142186 TRANSLATION protein_coding start - 3 82.0 0.0 1.264 0.0 43.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026566 Mpzl1 ENSMUST00000193910 ENSMUSP00000142046 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000026566 Mpzl1 ENSMUST00000192848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026566 Mpzl1 ENSMUST00000111435 ENSMUSP00000107062 TRANSLATION protein_coding - CCDS35757.1 1 270.0 0.0 4.5105 4.5 74.1 3.0 2,-3 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000060568 Fam78b ENSMUST00000156025 ENSMUSP00000117572 TRANSLATION nonsense_mediated_decay - CCDS35764.1 1 261.0 0.0 2.0 31.6 0.0 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000060568 Fam78b ENSMUST00000122929 ENSMUSP00000115826 TRANSLATION nonsense_mediated_decay start - 1 257.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.082 - -2.0 MINOR ENSMUSG00000060568 Fam78b ENSMUST00000165874 ENSMUSP00000131620 TRANSLATION protein_coding - CCDS35764.1 1 261.0 0.0 2.0 31.6 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000060568 Fam78b ENSMUST00000190081 ENSMUSP00000139628 TRANSLATION protein_coding - CCDS35764.1 1 261.0 0.0 2.0 31.6 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000060568 Fam78b ENSMUST00000128373 ENSMUSP00000117516 TRANSLATION nonsense_mediated_decay start - 1 254.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0602 - -2.0 MINOR ENSMUSG00000060568 Fam78b ENSMUST00000126198 ENSMUSP00000122636 TRANSLATION protein_coding - CCDS35764.1 1 261.0 0.0 2.0 31.6 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000055322 Tns1 ENSMUST00000189571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055322 Tns1 ENSMUST00000188436 - NO_TRANSLATION retained_intron ENSMUSG00000055322 Tns1 ENSMUST00000188942 - NO_TRANSLATION retained_intron ENSMUSG00000055322 Tns1 ENSMUST00000212888 ENSMUSP00000148638 TRANSLATION protein_coding - - 5 1880.0 18.0 17.775 0.0 310.0 0.0 -4,-6 1.0 61 14.0 ALTERNATIVE:2 ENSMUSG00000055322 Tns1 ENSMUST00000169786 ENSMUSP00000127715 TRANSLATION protein_coding - CCDS78614.1 5 1888.0 18.0 17.775 0.3 310.0 0.0 -4,-6 0.7946 61 14.0 ALTERNATIVE:2 ENSMUSG00000055322 Tns1 ENSMUST00000191204 ENSMUSP00000140878 TRANSLATION protein_coding start/stop - 3 172.0 8.0 1.79 0.0 28.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000055322 Tns1 ENSMUST00000185702 ENSMUSP00000140094 TRANSLATION protein_coding start - 5 1719.0 10.0 16.585 0.0 282.0 0.0 -4,-5 0.0931 57 -2.0 MINOR ENSMUSG00000055322 Tns1 ENSMUST00000189228 ENSMUSP00000139721 TRANSLATION protein_coding start/stop - 3 149.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 4 -2.0 MINOR ENSMUSG00000055322 Tns1 ENSMUST00000187281 ENSMUSP00000139616 TRANSLATION protein_coding start/stop - 3 196.0 1.0 1.99 0.0 0.0 0.0 -3,-6 0.0 6 -2.0 MINOR ENSMUSG00000055322 Tns1 ENSMUST00000191367 ENSMUSP00000140991 TRANSLATION protein_coding stop - 2 88.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000055322 Tns1 ENSMUST00000185331 ENSMUSP00000140771 TRANSLATION protein_coding start - 5 1705.0 10.0 16.585 0.0 280.5 0.0 -4,-5 0.0891 55 -2.0 MINOR ENSMUSG00000055322 Tns1 ENSMUST00000191527 - NO_TRANSLATION retained_intron ENSMUSG00000055322 Tns1 ENSMUST00000188208 ENSMUSP00000140837 TRANSLATION protein_coding stop - 2 118.0 8.0 1.256 0.0 28.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000055322 Tns1 ENSMUST00000191104 ENSMUSP00000140317 TRANSLATION protein_coding - CCDS48288.2 5 1867.0 18.0 17.775 0.3 310.0 0.0 -4,-6 0.7677 62 14.0 PRINCIPAL:3 ENSMUSG00000055322 Tns1 ENSMUST00000185529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055322 Tns1 ENSMUST00000187584 ENSMUSP00000140254 TRANSLATION protein_coding - - 5 1823.0 18.0 17.775 0.0 310.0 0.0 -4,-7 0.4726 60 14.0 ALTERNATIVE:2 ENSMUSG00000055322 Tns1 ENSMUST00000239451 ENSMUSP00000159329 TRANSLATION protein_coding - - - 1844.0 18.0 17.775 0.0 310.0 0.0 0,-5 0.5607 60 14.0 ALTERNATIVE:2 ENSMUSG00000055322 Tns1 ENSMUST00000185264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055322 Tns1 ENSMUST00000186381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055322 Tns1 ENSMUST00000191264 - NO_TRANSLATION retained_intron ENSMUSG00000055322 Tns1 ENSMUST00000190599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055322 Tns1 ENSMUST00000190389 ENSMUSP00000140448 TRANSLATION protein_coding start/stop - 5 142.0 0.0 2.03 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000055322 Tns1 ENSMUST00000187691 ENSMUSP00000139844 TRANSLATION protein_coding - - 1 624.0 0.0 6.805 0.0 168.5 0.0 -4,-7 0.0011 28 0.286 MINOR ENSMUSG00000079470 Utp14b ENSMUST00000151622 ENSMUSP00000121391 TRANSLATION protein_coding - CCDS15086.1 1 780.0 0.0 0.0 0.0 533.4 0.0 -4,-6 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000079470 Utp14b ENSMUST00000053760 ENSMUSP00000052149 TRANSLATION protein_coding - CCDS15086.1 1 780.0 0.0 0.0 0.0 533.4 0.0 -4,-6 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000028354 Fmn2 ENSMUST00000193905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028354 Fmn2 ENSMUST00000030039 ENSMUSP00000030039 TRANSLATION protein_coding - CCDS48459.1 1 1578.0 0.0 8.505 0.0 382.5 0.0 -4,-5 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000028354 Fmn2 ENSMUST00000191821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028354 Fmn2 ENSMUST00000195621 ENSMUSP00000142288 TRANSLATION protein_coding start/stop - 3 145.0 0.0 1.7 0.0 42.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028354 Fmn2 ENSMUST00000195300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028354 Fmn2 ENSMUST00000191971 - NO_TRANSLATION retained_intron ENSMUSG00000031506 Ptpn7 ENSMUST00000187985 ENSMUSP00000141133 TRANSLATION protein_coding - CCDS15315.1 5 359.0 12.0 7.5 8.3 264.2 0.0 -4,-2 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000031506 Ptpn7 ENSMUST00000188478 - NO_TRANSLATION retained_intron ENSMUSG00000031506 Ptpn7 ENSMUST00000049449 ENSMUSP00000045803 TRANSLATION protein_coding - CCDS15315.1 1 359.0 12.0 7.5 8.3 264.2 0.0 -4,-2 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000031506 Ptpn7 ENSMUST00000167080 ENSMUSP00000129474 TRANSLATION protein_coding - CCDS15315.1 1 359.0 12.0 7.5 8.3 264.2 0.0 -4,-2 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000079658 Eloc ENSMUST00000188641 ENSMUSP00000140422 TRANSLATION protein_coding - CCDS35517.1 1 112.0 0.0 2.5 33.6 43.5 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000079658 Eloc ENSMUST00000188987 - NO_TRANSLATION retained_intron ENSMUSG00000079658 Eloc ENSMUST00000115352 ENSMUSP00000111009 TRANSLATION protein_coding - CCDS35517.1 1 112.0 0.0 2.5 33.6 43.5 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000079658 Eloc ENSMUST00000185393 ENSMUSP00000140161 TRANSLATION protein_coding stop - 2 95.0 0.0 2.0 0.0 43.5 0.0 -4,-5 0.0012 5 -2.0 MINOR ENSMUSG00000079658 Eloc ENSMUST00000191535 - NO_TRANSLATION retained_intron ENSMUSG00000079658 Eloc ENSMUST00000186541 - NO_TRANSLATION retained_intron ENSMUSG00000079658 Eloc ENSMUST00000185771 ENSMUSP00000139675 TRANSLATION protein_coding - CCDS35517.1 5 112.0 0.0 2.5 33.6 43.5 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000079658 Eloc ENSMUST00000186948 ENSMUSP00000140962 TRANSLATION protein_coding - CCDS35517.1 2 112.0 0.0 2.5 33.6 43.5 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000079658 Eloc ENSMUST00000187910 ENSMUSP00000139480 TRANSLATION protein_coding - CCDS78549.1 2 134.0 0.0 2.5 0.0 43.5 0.0 -4,-5 0.1166 5 12.0 MINOR ENSMUSG00000079658 Eloc ENSMUST00000190986 - NO_TRANSLATION retained_intron ENSMUSG00000079658 Eloc ENSMUST00000186701 ENSMUSP00000139741 TRANSLATION protein_coding stop - 5 51.0 0.0 1.0 0.0 29.6 0.0 -4,-5 0.0003 3 -2.0 MINOR ENSMUSG00000036766 Dner ENSMUST00000191546 ENSMUSP00000140662 TRANSLATION protein_coding stop - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036766 Dner ENSMUST00000191306 - NO_TRANSLATION retained_intron ENSMUSG00000036766 Dner ENSMUST00000185606 ENSMUSP00000140986 TRANSLATION protein_coding stop - 3 175.0 3.0 0.0 0.0 22.1 0.0 -4,-7 0.0001 4 -2.0 MINOR ENSMUSG00000036766 Dner ENSMUST00000049126 ENSMUSP00000042927 TRANSLATION protein_coding - CCDS15105.1 1 737.0 12.0 4.48 5.5 210.7 0.0 2,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000034159 Mab21l4 ENSMUST00000143419 ENSMUSP00000115971 TRANSLATION protein_coding - CCDS15185.1 1 452.0 0.0 0.765 0.1 55.5 0.0 -4,-6 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000034159 Mab21l4 ENSMUST00000043718 ENSMUSP00000035332 TRANSLATION protein_coding - CCDS15185.1 1 452.0 0.0 0.765 0.1 55.5 0.0 -4,-6 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000039246 Lyplal1 ENSMUST00000195481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039246 Lyplal1 ENSMUST00000045388 ENSMUSP00000048229 TRANSLATION protein_coding - CCDS15600.1 1 239.0 7.0 5.0 13.6 144.2 0.0 -4,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000026609 Ush2a ENSMUST00000142159 - NO_TRANSLATION retained_intron ENSMUSG00000026609 Ush2a ENSMUST00000124358 - NO_TRANSLATION retained_intron ENSMUSG00000026609 Ush2a ENSMUST00000060479 ENSMUSP00000050454 TRANSLATION protein_coding - CCDS15607.1 1 5193.0 0.0 13.184 0.1 996.7 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026609 Ush2a ENSMUST00000127077 ENSMUSP00000121033 TRANSLATION protein_coding start - 5 237.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.001 - -2.0 MINOR ENSMUSG00000026609 Ush2a ENSMUST00000142189 - NO_TRANSLATION retained_intron ENSMUSG00000026556 Vangl2 ENSMUST00000153662 ENSMUSP00000116522 TRANSLATION protein_coding stop - 3 130.0 0.0 0.0 0.0 119.7 3.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026556 Vangl2 ENSMUST00000027837 ENSMUSP00000027837 TRANSLATION protein_coding - CCDS15505.1 1 521.0 0.0 0.0 34.3 833.9 6.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000026556 Vangl2 ENSMUST00000111264 ENSMUSP00000106895 TRANSLATION protein_coding - - 1 561.0 0.0 0.0 0.0 804.2 6.0 -4,-5 0.0618 5 4.218 MINOR ENSMUSG00000026556 Vangl2 ENSMUST00000247845 ENSMUSP00000159531 TRANSLATION protein_coding - - - 569.0 0.0 0.0 0.0 833.9 6.0 -4,-5 0.1179 6 6.0 MINOR ENSMUSG00000026556 Vangl2 ENSMUST00000138714 ENSMUSP00000117736 TRANSLATION protein_coding stop - 3 102.0 0.0 0.0 0.0 77.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026556 Vangl2 ENSMUST00000148363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026556 Vangl2 ENSMUST00000111263 ENSMUSP00000106894 TRANSLATION protein_coding - CCDS15505.1 5 521.0 0.0 0.0 34.3 833.9 6.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000050788 Or10z1 ENSMUST00000061990 ENSMUSP00000050893 TRANSLATION protein_coding - CCDS15540.1 - 313.0 0.0 1.0 8.7 178.6 7.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050788 Or10z1 ENSMUST00000214725 ENSMUSP00000149512 TRANSLATION protein_coding - CCDS15540.1 5 313.0 0.0 1.0 8.7 178.6 7.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053963 Stum ENSMUST00000210107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053963 Stum ENSMUST00000211782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053963 Stum ENSMUST00000136521 ENSMUSP00000119782 TRANSLATION protein_coding - CCDS48467.1 1 141.0 0.0 0.0 10.0 93.0 2.0 -4,-7 1.0 3 5.0 PRINCIPAL:4 ENSMUSG00000053963 Stum ENSMUST00000210737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053963 Stum ENSMUST00000179826 ENSMUSP00000137089 TRANSLATION protein_coding - - 5 141.0 0.0 0.0 10.0 93.0 2.0 -4,-7 0.8329 3 5.0 ALTERNATIVE:1 ENSMUSG00000053963 Stum ENSMUST00000211561 ENSMUSP00000147747 TRANSLATION protein_coding - - 5 138.0 0.0 0.0 10.0 93.0 2.0 -4,-7 0.7885 3 5.0 ALTERNATIVE:1 ENSMUSG00000034343 Ube2f ENSMUST00000171165 ENSMUSP00000126173 TRANSLATION protein_coding - CCDS48322.1 1 185.0 0.0 5.34 29.5 107.7 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000034343 Ube2f ENSMUST00000187494 - NO_TRANSLATION retained_intron ENSMUSG00000034343 Ube2f ENSMUST00000188576 - NO_TRANSLATION retained_intron ENSMUSG00000034343 Ube2f ENSMUST00000059743 ENSMUSP00000054303 TRANSLATION protein_coding - CCDS48322.1 1 185.0 0.0 5.34 29.5 107.7 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000034343 Ube2f ENSMUST00000171112 ENSMUSP00000131330 TRANSLATION protein_coding - CCDS48322.1 1 185.0 0.0 5.34 29.5 107.7 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000034343 Ube2f ENSMUST00000191533 ENSMUSP00000140316 TRANSLATION protein_coding stop - 5 56.0 0.0 1.26 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000034343 Ube2f ENSMUST00000185697 - NO_TRANSLATION retained_intron ENSMUSG00000034343 Ube2f ENSMUST00000185950 - NO_TRANSLATION retained_intron ENSMUSG00000034343 Ube2f ENSMUST00000191368 ENSMUSP00000140743 TRANSLATION protein_coding - CCDS48322.1 1 185.0 0.0 5.34 29.5 107.7 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000034343 Ube2f ENSMUST00000178627 ENSMUSP00000136915 TRANSLATION protein_coding - CCDS48322.1 1 185.0 0.0 5.34 29.5 107.7 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000034343 Ube2f ENSMUST00000189589 - NO_TRANSLATION retained_intron ENSMUSG00000002459 Rgs20 ENSMUST00000147158 ENSMUSP00000117380 TRANSLATION protein_coding stop - 2 200.0 0.0 1.1 0.0 51.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002459 Rgs20 ENSMUST00000170566 ENSMUSP00000131165 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000002459 Rgs20 ENSMUST00000119256 ENSMUSP00000113324 TRANSLATION protein_coding - CCDS69859.1 3 208.0 0.0 2.43 5.9 120.9 0.0 -4,-7 0.8234 4 9.662 ALTERNATIVE:1 ENSMUSG00000002459 Rgs20 ENSMUST00000156289 - NO_TRANSLATION retained_intron ENSMUSG00000002459 Rgs20 ENSMUST00000133521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002459 Rgs20 ENSMUST00000002533 ENSMUSP00000002533 TRANSLATION protein_coding - CCDS14807.1 1 239.0 0.0 2.43 6.9 120.9 0.0 -4,-2 1.0 4 10.0 PRINCIPAL:4 ENSMUSG00000002459 Rgs20 ENSMUST00000118000 ENSMUSP00000113398 TRANSLATION protein_coding - CCDS48213.1 5 372.0 0.0 2.43 0.0 120.9 0.0 -4,-5 0.1609 4 8.0 MINOR ENSMUSG00000026073 Il1r2 ENSMUST00000191671 ENSMUSP00000141882 TRANSLATION protein_coding stop - 3 183.0 0.0 2.75 0.0 22.1 0.0 3,-2 0.0 3 -2.0 MINOR ENSMUSG00000026073 Il1r2 ENSMUST00000194913 ENSMUSP00000141785 TRANSLATION protein_coding stop - 3 2.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.033 - -2.0 MINOR ENSMUSG00000026073 Il1r2 ENSMUST00000195770 ENSMUSP00000141804 TRANSLATION nonsense_mediated_decay - - 1 75.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0017 - -2.0 MINOR ENSMUSG00000026073 Il1r2 ENSMUST00000027243 ENSMUSP00000027243 TRANSLATION protein_coding - CCDS14909.1 1 410.0 0.0 6.5 0.0 63.7 0.0 3,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000026489 Coq8a ENSMUST00000160482 ENSMUSP00000124329 TRANSLATION protein_coding stop - 2 130.0 0.0 0.22375 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000161814 ENSMUSP00000125071 TRANSLATION protein_coding stop - 3 117.0 0.0 0.22375 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000159914 ENSMUSP00000123720 TRANSLATION protein_coding stop - 2 105.0 0.0 0.22375 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000170472 ENSMUSP00000128290 TRANSLATION protein_coding - CCDS15566.1 1 645.0 11.0 10.80375 9.2 111.1 0.0 -4,-7 1.0 24 21.0 PRINCIPAL:1 ENSMUSG00000026489 Coq8a ENSMUST00000161746 ENSMUSP00000125269 TRANSLATION protein_coding stop - 1 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000159591 - NO_TRANSLATION retained_intron ENSMUSG00000026489 Coq8a ENSMUST00000161300 ENSMUSP00000125002 TRANSLATION protein_coding start - 5 401.0 11.0 9.08 0.0 51.3 0.0 -3,-1 0.0012 17 -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000161743 ENSMUSP00000123905 TRANSLATION protein_coding stop - 3 71.0 0.0 0.22375 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000161379 ENSMUSP00000141262 TRANSLATION protein_coding stop - 1 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000161632 ENSMUSP00000124481 TRANSLATION nonsense_mediated_decay start - 3 149.0 0.0 0.1 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000160121 ENSMUSP00000124208 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 0.22375 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000162725 ENSMUSP00000125024 TRANSLATION protein_coding stop - 2 108.0 0.0 0.22375 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000162769 ENSMUSP00000141998 TRANSLATION protein_coding stop - 5 60.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000160169 ENSMUSP00000125089 TRANSLATION nonsense_mediated_decay - - 5 139.0 0.0 0.22375 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000160879 ENSMUSP00000141948 TRANSLATION protein_coding - - 5 111.0 0.0 1.22375 0.0 0.0 0.0 -4,-7 0.0 5 0.0 MINOR ENSMUSG00000026489 Coq8a ENSMUST00000027766 ENSMUSP00000027766 TRANSLATION protein_coding - CCDS15566.1 1 645.0 11.0 10.80375 9.2 111.1 0.0 -4,-7 1.0 24 21.0 PRINCIPAL:1 ENSMUSG00000026489 Coq8a ENSMUST00000160102 ENSMUSP00000124289 TRANSLATION nonsense_mediated_decay - - 2 70.0 0.0 0.22375 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000094429 Gm19965 ENSMUST00000179777 ENSMUSP00000137019 TRANSLATION protein_coding - - 5 723.0 28.0 0.5 0.0 270.7 0.0 -4,-5 0.8562 - 18.0 PRINCIPAL:1 ENSMUSG00000026587 Astn1 ENSMUST00000046110 ENSMUSP00000039711 TRANSLATION protein_coding - CCDS78721.1 1 1294.0 0.0 7.614 11.9 34.7 1.0 2,-2 1.0 25 15.0 PRINCIPAL:1 ENSMUSG00000026587 Astn1 ENSMUST00000194217 ENSMUSP00000141580 TRANSLATION nonsense_mediated_decay start - 3 76.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026587 Astn1 ENSMUST00000192619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026587 Astn1 ENSMUST00000195311 ENSMUSP00000141518 TRANSLATION protein_coding - - 1 1172.0 0.0 5.064 0.0 34.7 1.0 2,-2 0.1576 20 6.9 MINOR ENSMUSG00000026587 Astn1 ENSMUST00000193042 ENSMUSP00000142322 TRANSLATION protein_coding - CCDS56648.1 1 1302.0 0.0 7.614 6.7 34.7 1.0 2,-2 0.8913 25 13.569 MINOR ENSMUSG00000026587 Astn1 ENSMUST00000194658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026587 Astn1 ENSMUST00000193599 ENSMUSP00000141498 TRANSLATION protein_coding stop - 3 150.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 5 -2.0 MINOR ENSMUSG00000026587 Astn1 ENSMUST00000194041 - NO_TRANSLATION retained_intron ENSMUSG00000026587 Astn1 ENSMUST00000194369 ENSMUSP00000142017 TRANSLATION protein_coding - - 1 893.0 0.0 1.9 0.0 34.7 1.0 2,-2 0.102 13 6.0 MINOR ENSMUSG00000026587 Astn1 ENSMUST00000170718 ENSMUSP00000127428 TRANSLATION protein_coding - - 1 840.0 0.0 1.9 0.0 34.7 1.0 2,-2 0.0947 13 6.0 MINOR ENSMUSG00000026587 Astn1 ENSMUST00000192821 ENSMUSP00000141260 TRANSLATION protein_coding start - 5 236.0 0.0 2.564 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000003135 Cnot11 ENSMUST00000161515 ENSMUSP00000125638 TRANSLATION protein_coding - CCDS14906.1 1 505.0 0.0 0.0 2.6 184.2 0.0 -4,0 1.0 10 7.0 PRINCIPAL:1 ENSMUSG00000003135 Cnot11 ENSMUST00000195567 ENSMUSP00000141388 TRANSLATION protein_coding start - 5 149.0 0.0 0.0 0.0 151.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000003135 Cnot11 ENSMUST00000003219 ENSMUSP00000003219 TRANSLATION protein_coding - CCDS14906.1 1 505.0 0.0 0.0 2.6 184.2 0.0 -4,0 1.0 10 7.0 PRINCIPAL:1 ENSMUSG00000003135 Cnot11 ENSMUST00000160145 - NO_TRANSLATION retained_intron ENSMUSG00000002881 Nab1 ENSMUST00000069792 ENSMUSP00000066696 TRANSLATION protein_coding - CCDS14944.1 1 486.0 0.0 1.6 11.0 503.7 0.0 -4,-5 1.0 8 11.0 PRINCIPAL:3 ENSMUSG00000002881 Nab1 ENSMUST00000186764 ENSMUSP00000141191 TRANSLATION protein_coding - - 5 485.0 0.0 1.6 11.0 499.5 0.0 -4,-5 0.8043 7 11.0 ALTERNATIVE:1 ENSMUSG00000002881 Nab1 ENSMUST00000167732 - NO_TRANSLATION retained_intron ENSMUSG00000002881 Nab1 ENSMUST00000168082 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002881 Nab1 ENSMUST00000170269 ENSMUSP00000131239 TRANSLATION protein_coding - - 5 456.0 0.0 1.6 1.0 439.7 0.0 -4,-5 0.0765 7 8.0 MINOR ENSMUSG00000058981 Or10j7 ENSMUST00000072395 ENSMUSP00000072231 TRANSLATION protein_coding - CCDS15523.1 - 310.0 0.0 1.0 12.5 183.7 7.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058981 Or10j7 ENSMUST00000215878 ENSMUSP00000151023 TRANSLATION protein_coding - CCDS15523.1 5 310.0 0.0 1.0 12.5 183.7 7.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058981 Or10j7 ENSMUST00000201132 ENSMUSP00000144530 TRANSLATION protein_coding - CCDS15523.1 3 310.0 0.0 1.0 12.5 183.7 7.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000012187 Mogat1 ENSMUST00000125458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012187 Mogat1 ENSMUST00000134947 ENSMUSP00000116178 TRANSLATION protein_coding stop - 5 201.0 0.0 4.33 0.0 178.9 2.0 -2,-5 0.0003 2 -2.0 MINOR ENSMUSG00000012187 Mogat1 ENSMUST00000113524 ENSMUSP00000109152 TRANSLATION protein_coding - CCDS15085.1 5 335.0 0.0 7.16 35.6 380.5 2.0 -2,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000012187 Mogat1 ENSMUST00000152111 ENSMUSP00000123427 TRANSLATION protein_coding stop - 2 82.0 0.0 2.0 0.0 28.5 2.0 -2,-5 0.0007 - -2.0 MINOR ENSMUSG00000012187 Mogat1 ENSMUST00000012331 ENSMUSP00000012331 TRANSLATION protein_coding - CCDS15085.1 1 335.0 0.0 7.16 35.6 380.5 2.0 -2,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000012187 Mogat1 ENSMUST00000149732 ENSMUSP00000117903 TRANSLATION protein_coding stop - 3 247.0 0.0 4.83 0.0 294.2 1.0 -1,-5 0.0 5 -2.0 MINOR ENSMUSG00000026090 Cracdl ENSMUST00000162875 ENSMUSP00000123803 TRANSLATION protein_coding - CCDS48242.1 1 1175.0 0.0 0.0 0.0 105.0 0.0 -4,-5 1.0 30 6.0 PRINCIPAL:1 ENSMUSG00000026090 Cracdl ENSMUST00000160023 ENSMUSP00000125015 TRANSLATION protein_coding start - 1 652.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0061 20 -2.0 MINOR ENSMUSG00000026090 Cracdl ENSMUST00000160589 ENSMUSP00000124777 TRANSLATION protein_coding stop - 1 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047343 Mettl21c ENSMUST00000061421 ENSMUSP00000061229 TRANSLATION protein_coding - CCDS14927.1 1 248.0 16.0 3.0 0.4 104.6 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000047343 Mettl21c ENSMUST00000159881 - NO_TRANSLATION retained_intron ENSMUSG00000047343 Mettl21c ENSMUST00000162750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059089 Fcgr4 ENSMUST00000078825 ENSMUSP00000077873 TRANSLATION protein_coding - CCDS15476.1 1 249.0 0.0 2.464 5.1 71.7 0.0 3,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000070565 Rasal2 ENSMUST00000134543 ENSMUSP00000119623 TRANSLATION protein_coding stop - 3 176.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000070565 Rasal2 ENSMUST00000143080 - NO_TRANSLATION retained_intron ENSMUSG00000070565 Rasal2 ENSMUST00000132699 ENSMUSP00000114964 TRANSLATION protein_coding - - 5 1261.0 0.0 5.81 0.0 760.5 0.0 -4,-5 0.3045 31 12.0 MINOR ENSMUSG00000070565 Rasal2 ENSMUST00000078308 ENSMUSP00000077423 TRANSLATION protein_coding - CCDS48408.1 1 1286.0 0.0 5.81 11.6 760.5 0.0 -4,-6 1.0 32 15.0 PRINCIPAL:1 ENSMUSG00000070565 Rasal2 ENSMUST00000129880 ENSMUSP00000118367 TRANSLATION protein_coding stop - 5 323.0 0.0 0.0 0.0 25.0 0.0 -4,-6 0.0011 3 -2.0 MINOR ENSMUSG00000070565 Rasal2 ENSMUST00000128538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070565 Rasal2 ENSMUST00000143358 ENSMUSP00000116974 TRANSLATION protein_coding stop - 5 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000016528 Mapkapk2 ENSMUST00000188459 ENSMUSP00000141124 TRANSLATION protein_coding stop - 3 162.0 12.0 4.25 0.0 158.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000016528 Mapkapk2 ENSMUST00000016672 ENSMUSP00000016672 TRANSLATION protein_coding - CCDS15266.1 1 386.0 21.0 8.75 0.4 228.4 0.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000026584 Scyl3 ENSMUST00000027876 ENSMUSP00000027876 TRANSLATION protein_coding - CCDS15430.1 1 735.0 0.0 4.167 1.4 27.7 0.0 -4,-6 1.0 19 6.25 PRINCIPAL:2 ENSMUSG00000026584 Scyl3 ENSMUST00000163033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026584 Scyl3 ENSMUST00000159516 ENSMUSP00000124301 TRANSLATION protein_coding start - 3 60.0 0.0 0.7 0.0 0.0 0.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000026584 Scyl3 ENSMUST00000162920 - NO_TRANSLATION retained_intron ENSMUSG00000026584 Scyl3 ENSMUST00000161908 ENSMUSP00000125735 TRANSLATION protein_coding - CCDS69967.1 1 722.0 0.0 4.542 0.0 27.7 0.0 -4,-6 0.5363 17 6.0 ALTERNATIVE:2 ENSMUSG00000026584 Scyl3 ENSMUST00000170359 ENSMUSP00000132109 TRANSLATION protein_coding - CCDS69967.1 5 722.0 0.0 4.542 0.0 27.7 0.0 -4,-6 0.5363 17 6.0 ALTERNATIVE:2 ENSMUSG00000026584 Scyl3 ENSMUST00000162234 ENSMUSP00000123704 TRANSLATION nonsense_mediated_decay - - 1 99.0 0.0 0.32 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000003051 Elf3 ENSMUST00000185752 ENSMUSP00000139769 TRANSLATION protein_coding - CCDS78689.1 1 371.0 0.0 3.0 10.2 185.2 0.0 -4,-5 1.0 4 14.982 PRINCIPAL:1 ENSMUSG00000003051 Elf3 ENSMUST00000188895 - NO_TRANSLATION retained_intron ENSMUSG00000003051 Elf3 ENSMUST00000003135 ENSMUSP00000003135 TRANSLATION protein_coding - CCDS48372.1 1 391.0 0.0 3.0 0.1 185.5 0.0 -4,-5 0.261 5 12.0 MINOR ENSMUSG00000026596 Abl2 ENSMUST00000173929 ENSMUSP00000133381 TRANSLATION protein_coding stop - 3 139.0 0.0 1.87 0.0 49.1 0.0 -,- 0.0 2 -2.0 MINOR ENSMUSG00000026596 Abl2 ENSMUST00000027888 ENSMUSP00000027888 TRANSLATION protein_coding - CCDS15393.1 1 1182.0 18.0 10.22 5.3 555.2 0.0 -,- 0.8178 18 15.592 PRINCIPAL:3 ENSMUSG00000026596 Abl2 ENSMUST00000190749 ENSMUSP00000140125 TRANSLATION protein_coding stop - 3 261.0 0.0 3.75 0.0 135.4 0.0 -,- 0.0 3 -2.0 MINOR ENSMUSG00000026596 Abl2 ENSMUST00000166172 ENSMUSP00000126181 TRANSLATION protein_coding - CCDS48404.1 1 1078.0 18.0 10.22 6.4 555.2 0.0 -,- 1.0 14 16.0 ALTERNATIVE:1 ENSMUSG00000041757 Plekha6 ENSMUST00000189598 ENSMUSP00000139613 TRANSLATION protein_coding start/stop - 3 175.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000041757 Plekha6 ENSMUST00000105082 ENSMUSP00000100703 TRANSLATION protein_coding - CCDS48361.1 1 1069.0 10.0 3.999 1.7 73.1 0.0 -4,-2 0.7046 17 9.208 MINOR ENSMUSG00000041757 Plekha6 ENSMUST00000239123 ENSMUSP00000158980 TRANSLATION protein_coding stop - - 135.0 9.0 2.125 0.0 29.7 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000041757 Plekha6 ENSMUST00000212142 - NO_TRANSLATION retained_intron ENSMUSG00000041757 Plekha6 ENSMUST00000212252 ENSMUSP00000148746 TRANSLATION protein_coding stop - 5 302.0 10.0 5.6 0.0 77.1 0.0 -4,-5 0.0354 4 -2.0 MINOR ENSMUSG00000041757 Plekha6 ENSMUST00000187299 ENSMUSP00000139958 TRANSLATION protein_coding start/stop - 5 122.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000041757 Plekha6 ENSMUST00000190884 - NO_TRANSLATION retained_intron ENSMUSG00000041757 Plekha6 ENSMUST00000190208 - NO_TRANSLATION retained_intron ENSMUSG00000041757 Plekha6 ENSMUST00000190186 ENSMUSP00000139584 TRANSLATION protein_coding start - 1 901.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0169 15 -2.0 MINOR ENSMUSG00000041757 Plekha6 ENSMUST00000038295 ENSMUSP00000048214 TRANSLATION protein_coding - CCDS15292.1 1 1173.0 10.0 3.9 1.0 77.1 0.0 -4,-2 0.4374 18 10.598 ALTERNATIVE:2 ENSMUSG00000041757 Plekha6 ENSMUST00000190694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041757 Plekha6 ENSMUST00000187285 ENSMUSP00000140558 TRANSLATION protein_coding - - 5 1048.0 10.0 3.9 2.7 77.1 0.0 -4,-2 1.0 17 11.598 PRINCIPAL:2 ENSMUSG00000041757 Plekha6 ENSMUST00000186917 ENSMUSP00000139794 TRANSLATION protein_coding - CCDS48361.1 1 1069.0 10.0 3.999 1.7 73.1 0.0 -4,-2 0.7046 17 9.208 MINOR ENSMUSG00000043282 Teddm1b ENSMUST00000055314 ENSMUSP00000058437 TRANSLATION protein_coding - CCDS15379.1 - 306.0 0.0 1.0 5.6 82.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060519 Tor3a ENSMUST00000154353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060519 Tor3a ENSMUST00000152604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060519 Tor3a ENSMUST00000122242 ENSMUSP00000113984 TRANSLATION nonsense_mediated_decay - CCDS15394.1 1 385.0 13.0 3.19 0.0 194.3 0.0 4,-1 1.0 - -2.0 MINOR ENSMUSG00000060519 Tor3a ENSMUST00000190607 ENSMUSP00000140129 TRANSLATION protein_coding - - 3 133.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0059 2 0.0 MINOR ENSMUSG00000060519 Tor3a ENSMUST00000156861 ENSMUSP00000140808 TRANSLATION nonsense_mediated_decay - - 2 115.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0044 2 -2.0 MINOR ENSMUSG00000060519 Tor3a ENSMUST00000150557 ENSMUSP00000137828 TRANSLATION nonsense_mediated_decay - - 2 245.0 10.0 0.8 0.0 163.7 0.0 4,-1 0.0057 4 -2.0 MINOR ENSMUSG00000060519 Tor3a ENSMUST00000079625 ENSMUSP00000078572 TRANSLATION protein_coding - CCDS15394.1 1 385.0 13.0 3.19 0.0 194.3 0.0 4,-1 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000060519 Tor3a ENSMUST00000188964 ENSMUSP00000140079 TRANSLATION protein_coding - CCDS15394.1 1 385.0 13.0 3.19 0.0 194.3 0.0 4,-1 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000043263 Ifi209 ENSMUST00000056071 ENSMUSP00000061900 TRANSLATION protein_coding - CCDS35791.1 1 420.0 0.0 3.33 0.0 286.5 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000043263 Ifi209 ENSMUST00000193727 ENSMUSP00000142161 TRANSLATION nonsense_mediated_decay - - 2 213.0 0.0 1.0 0.0 45.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000042451 Mybph ENSMUST00000038445 ENSMUSP00000042195 TRANSLATION protein_coding - CCDS35713.1 1 483.0 0.0 6.55 6.7 201.8 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000042451 Mybph ENSMUST00000191577 ENSMUSP00000141104 TRANSLATION protein_coding - CCDS35713.1 5 483.0 0.0 6.55 6.7 201.8 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000048480 Cxcr1 ENSMUST00000053389 ENSMUSP00000049714 TRANSLATION protein_coding - CCDS15041.1 1 351.0 0.0 1.0 0.1 170.8 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048480 Cxcr1 ENSMUST00000190313 ENSMUSP00000139555 TRANSLATION protein_coding - CCDS15041.1 - 351.0 0.0 1.0 0.1 170.8 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026303 Mlph ENSMUST00000136220 - NO_TRANSLATION retained_intron ENSMUSG00000026303 Mlph ENSMUST00000125149 ENSMUSP00000123314 TRANSLATION protein_coding stop - 2 120.0 7.0 2.0 0.0 119.5 0.0 -4,-7 0.0008 2 -2.0 MINOR ENSMUSG00000026303 Mlph ENSMUST00000027528 ENSMUSP00000027528 TRANSLATION protein_coding - CCDS15155.1 1 590.0 7.0 3.0 0.4 206.3 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000062310 Glrp1 ENSMUST00000067625 ENSMUSP00000063883 TRANSLATION protein_coding - CCDS35661.1 1 174.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.8816 - 0.0 PRINCIPAL:1 ENSMUSG00000026447 Pik3c2b ENSMUST00000239467 ENSMUSP00000159321 TRANSLATION protein_coding stop - - 240.0 0.0 0.48 0.0 96.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026447 Pik3c2b ENSMUST00000153707 ENSMUSP00000115469 TRANSLATION protein_coding stop - 2 310.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.002 1 -2.0 MINOR ENSMUSG00000026447 Pik3c2b ENSMUST00000077730 ENSMUSP00000076911 TRANSLATION protein_coding - CCDS48360.1 5 1632.0 17.0 14.775 11.4 651.4 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000026447 Pik3c2b ENSMUST00000124934 - NO_TRANSLATION retained_intron ENSMUSG00000026447 Pik3c2b ENSMUST00000145153 - NO_TRANSLATION retained_intron ENSMUSG00000037503 Fam168b ENSMUST00000185469 ENSMUSP00000141150 TRANSLATION nonsense_mediated_decay - - 3 70.0 0.0 0.0 0.0 89.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037503 Fam168b ENSMUST00000185279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037503 Fam168b ENSMUST00000185231 ENSMUSP00000139456 TRANSLATION protein_coding stop - 3 92.0 0.0 0.0 0.0 84.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037503 Fam168b ENSMUST00000167518 ENSMUSP00000131720 TRANSLATION protein_coding - CCDS48236.1 5 206.0 0.0 0.0 3.2 369.4 0.0 -4,-5 0.2639 - 0.26 MINOR ENSMUSG00000037503 Fam168b ENSMUST00000170092 ENSMUSP00000128676 TRANSLATION protein_coding - CCDS48235.1 5 201.0 0.0 0.0 31.7 351.2 0.0 -4,-5 0.9233 - 3.644 ALTERNATIVE:1 ENSMUSG00000037503 Fam168b ENSMUST00000140534 - NO_TRANSLATION retained_intron ENSMUSG00000037503 Fam168b ENSMUST00000047534 ENSMUSP00000042212 TRANSLATION protein_coding - CCDS14873.1 1 194.0 0.0 0.0 34.7 362.7 0.0 -4,-5 1.0 - 4.0 PRINCIPAL:4 ENSMUSG00000037503 Fam168b ENSMUST00000191307 ENSMUSP00000140573 TRANSLATION protein_coding - CCDS48236.1 2 206.0 0.0 0.0 3.2 369.4 0.0 -4,-5 0.2639 - 0.26 MINOR ENSMUSG00000026349 Ccnt2 ENSMUST00000112570 ENSMUSP00000108189 TRANSLATION protein_coding - - 1 657.0 0.0 6.5 3.1 67.6 0.0 -4,-1 1.0 7 7.0 PRINCIPAL:2 ENSMUSG00000026349 Ccnt2 ENSMUST00000153359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026349 Ccnt2 ENSMUST00000126850 - NO_TRANSLATION retained_intron ENSMUSG00000026349 Ccnt2 ENSMUST00000143513 - NO_TRANSLATION retained_intron ENSMUSG00000026349 Ccnt2 ENSMUST00000125760 - NO_TRANSLATION retained_intron ENSMUSG00000026349 Ccnt2 ENSMUST00000149760 - NO_TRANSLATION retained_intron ENSMUSG00000026349 Ccnt2 ENSMUST00000027587 ENSMUSP00000027587 TRANSLATION protein_coding - CCDS15248.1 1 723.0 0.0 6.5 0.8 67.6 0.0 -4,-1 0.5967 7 6.0 ALTERNATIVE:2 ENSMUSG00000041945 Mfsd9 ENSMUST00000131390 ENSMUSP00000137884 TRANSLATION nonsense_mediated_decay - - 1 50.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000041945 Mfsd9 ENSMUST00000144385 - NO_TRANSLATION retained_intron ENSMUSG00000041945 Mfsd9 ENSMUST00000039672 ENSMUSP00000035727 TRANSLATION protein_coding - CCDS14915.1 1 466.0 0.0 1.78 0.0 141.8 0.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000026688 Mgst3 ENSMUST00000028005 ENSMUSP00000028005 TRANSLATION protein_coding - CCDS15457.1 1 153.0 6.0 4.0 11.1 86.6 0.0 -3,-6 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000026475 Rgs16 ENSMUST00000027748 ENSMUSP00000027748 TRANSLATION protein_coding - CCDS15376.1 1 201.0 0.0 2.75 12.7 121.7 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000026154 Sdhaf4 ENSMUST00000027338 ENSMUSP00000027338 TRANSLATION protein_coding - CCDS14852.1 1 104.0 0.0 1.4 4.1 76.5 0.0 -4,0 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000026154 Sdhaf4 ENSMUST00000155767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026601 Axdnd1 ENSMUST00000179985 ENSMUSP00000136339 TRANSLATION protein_coding stop - 2 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026601 Axdnd1 ENSMUST00000212342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026601 Axdnd1 ENSMUST00000178036 ENSMUSP00000137354 TRANSLATION protein_coding - - 5 982.0 0.0 0.0 0.0 43.3 0.0 -4,-5 0.8042 1 0.0 PRINCIPAL:2 ENSMUSG00000026601 Axdnd1 ENSMUST00000180173 ENSMUSP00000136744 TRANSLATION protein_coding start - 1 471.0 0.0 0.0 0.0 36.1 0.0 -4,-5 0.021 - -2.0 MINOR ENSMUSG00000026601 Axdnd1 ENSMUST00000177858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026601 Axdnd1 ENSMUST00000179572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026601 Axdnd1 ENSMUST00000179744 ENSMUSP00000137094 TRANSLATION protein_coding stop - 2 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026601 Axdnd1 ENSMUST00000212747 ENSMUSP00000148583 TRANSLATION protein_coding - - 5 275.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0022 1 0.0 MINOR ENSMUSG00000026601 Axdnd1 ENSMUST00000027895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026601 Axdnd1 ENSMUST00000177824 ENSMUSP00000135900 TRANSLATION protein_coding start - 5 880.0 0.0 0.0 0.0 43.3 0.0 -4,-5 0.1441 1 -2.0 MINOR ENSMUSG00000026601 Axdnd1 ENSMUST00000213088 ENSMUSP00000148420 TRANSLATION protein_coding - CCDS83611.1 5 1111.0 0.0 0.0 0.0 43.3 0.0 -4,-5 0.5267 1 0.0 ALTERNATIVE:2 ENSMUSG00000034432 Cops8 ENSMUST00000191510 - NO_TRANSLATION retained_intron ENSMUSG00000034432 Cops8 ENSMUST00000186750 ENSMUSP00000139836 TRANSLATION protein_coding stop - 5 80.0 0.0 2.08 0.0 49.9 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000034432 Cops8 ENSMUST00000190057 - NO_TRANSLATION retained_intron ENSMUSG00000034432 Cops8 ENSMUST00000036153 ENSMUSP00000035884 TRANSLATION protein_coding - CCDS15153.1 1 209.0 0.0 5.83 16.5 134.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000034432 Cops8 ENSMUST00000189107 - NO_TRANSLATION retained_intron ENSMUSG00000034432 Cops8 ENSMUST00000189309 - NO_TRANSLATION retained_intron ENSMUSG00000034432 Cops8 ENSMUST00000186152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034432 Cops8 ENSMUST00000190700 - NO_TRANSLATION retained_intron ENSMUSG00000034432 Cops8 ENSMUST00000186882 ENSMUSP00000140707 TRANSLATION protein_coding start - 5 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047216 Cdh19 ENSMUST00000187555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047216 Cdh19 ENSMUST00000094626 ENSMUSP00000092210 TRANSLATION protein_coding - CCDS35687.1 1 770.0 45.0 7.68 5.1 349.7 0.0 -1,-4 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000010609 Psen2 ENSMUST00000128223 - NO_TRANSLATION retained_intron ENSMUSG00000010609 Psen2 ENSMUST00000149590 - NO_TRANSLATION retained_intron ENSMUSG00000010609 Psen2 ENSMUST00000111106 ENSMUSP00000106735 TRANSLATION protein_coding - CCDS15567.1 5 448.0 0.0 6.55 9.9 517.0 8.0 -4,-5 1.0 3 9.0 PRINCIPAL:4 ENSMUSG00000010609 Psen2 ENSMUST00000111108 ENSMUSP00000106737 TRANSLATION protein_coding - CCDS15567.1 1 448.0 0.0 6.55 9.9 517.0 8.0 -4,-5 1.0 3 9.0 PRINCIPAL:4 ENSMUSG00000010609 Psen2 ENSMUST00000130029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010609 Psen2 ENSMUST00000130711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010609 Psen2 ENSMUST00000010753 ENSMUSP00000010753 TRANSLATION protein_coding - CCDS15567.1 1 448.0 0.0 6.55 9.9 517.0 8.0 -4,-5 1.0 3 9.0 PRINCIPAL:4 ENSMUSG00000010609 Psen2 ENSMUST00000111104 ENSMUSP00000106733 TRANSLATION protein_coding - - 1 447.0 0.0 6.55 9.9 517.0 8.0 -4,-5 0.8324 3 9.0 ALTERNATIVE:1 ENSMUSG00000010609 Psen2 ENSMUST00000111105 ENSMUSP00000106734 TRANSLATION protein_coding - CCDS15567.1 5 448.0 0.0 6.55 9.9 517.0 8.0 -4,-5 1.0 3 9.0 PRINCIPAL:4 ENSMUSG00000010609 Psen2 ENSMUST00000133340 ENSMUSP00000120216 TRANSLATION protein_coding stop - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000010609 Psen2 ENSMUST00000193897 - NO_TRANSLATION retained_intron ENSMUSG00000010609 Psen2 ENSMUST00000136291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025978 Rftn2 ENSMUST00000132055 ENSMUSP00000137942 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 0.0 0.0 97.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025978 Rftn2 ENSMUST00000027121 ENSMUSP00000027121 TRANSLATION protein_coding - CCDS14962.1 1 500.0 0.0 0.0 8.3 609.4 0.0 -4,-5 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000025978 Rftn2 ENSMUST00000133294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025978 Rftn2 ENSMUST00000114428 ENSMUSP00000110071 TRANSLATION protein_coding - - 1 344.0 0.0 0.0 0.0 374.9 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000025978 Rftn2 ENSMUST00000141107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026187 Xrcc5 ENSMUST00000027379 ENSMUSP00000027379 TRANSLATION protein_coding - CCDS35608.1 1 732.0 0.0 16.68 11.6 559.2 0.0 -2,-5 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000033849 B3galt2 ENSMUST00000038252 ENSMUSP00000046118 TRANSLATION protein_coding - CCDS15342.1 1 422.0 0.0 0.6 24.9 218.4 0.0 -4,0 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026234 Ncl ENSMUST00000186050 - NO_TRANSLATION retained_intron ENSMUSG00000026234 Ncl ENSMUST00000185676 - NO_TRANSLATION retained_intron ENSMUSG00000026234 Ncl ENSMUST00000027438 ENSMUSP00000027438 TRANSLATION protein_coding - CCDS35646.1 1 707.0 3.0 7.8 0.0 203.1 0.0 -4,-5 1.0 24 15.0 PRINCIPAL:1 ENSMUSG00000026234 Ncl ENSMUST00000185785 ENSMUSP00000140696 TRANSLATION protein_coding stop - 2 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026234 Ncl ENSMUST00000189504 - NO_TRANSLATION retained_intron ENSMUSG00000026234 Ncl ENSMUST00000188682 - NO_TRANSLATION retained_intron ENSMUSG00000026104 Stat1 ENSMUST00000188681 ENSMUSP00000141144 TRANSLATION protein_coding stop - 2 154.0 0.0 4.0 0.0 139.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026104 Stat1 ENSMUST00000191435 ENSMUSP00000139746 TRANSLATION protein_coding - - 5 712.0 0.0 17.309 2.5 630.2 0.0 -4,-5 0.1068 25 6.796 MINOR ENSMUSG00000026104 Stat1 ENSMUST00000189075 - NO_TRANSLATION retained_intron ENSMUSG00000026104 Stat1 ENSMUST00000189347 ENSMUSP00000141125 TRANSLATION protein_coding - - 5 712.0 0.0 17.309 2.5 630.2 0.0 -4,-5 0.1068 25 6.796 MINOR ENSMUSG00000026104 Stat1 ENSMUST00000189244 ENSMUSP00000140482 TRANSLATION protein_coding start - 1 243.0 0.0 4.98 0.0 132.6 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000026104 Stat1 ENSMUST00000186057 ENSMUSP00000141132 TRANSLATION protein_coding - CCDS78581.1 1 755.0 0.0 18.426 11.0 676.1 0.0 -4,-5 0.8363 26 13.37 MINOR ENSMUSG00000026104 Stat1 ENSMUST00000070968 ENSMUSP00000066743 TRANSLATION protein_coding - CCDS56628.1 1 749.0 0.0 18.36 22.4 684.4 0.0 -4,-5 1.0 26 15.868 PRINCIPAL:1 ENSMUSG00000026104 Stat1 ENSMUST00000186574 ENSMUSP00000140518 TRANSLATION protein_coding - - 1 712.0 0.0 17.309 2.5 630.2 0.0 -4,-5 0.1068 25 6.796 MINOR ENSMUSG00000026104 Stat1 ENSMUST00000185743 - NO_TRANSLATION retained_intron ENSMUSG00000026104 Stat1 ENSMUST00000186857 ENSMUSP00000140875 TRANSLATION protein_coding - CCDS56628.1 1 749.0 0.0 18.36 22.4 684.4 0.0 -4,-5 1.0 26 15.868 PRINCIPAL:1 ENSMUSG00000026104 Stat1 ENSMUST00000186186 - NO_TRANSLATION retained_intron ENSMUSG00000026104 Stat1 ENSMUST00000189336 ENSMUSP00000140643 TRANSLATION nonsense_mediated_decay start - 3 131.0 0.0 2.15 0.0 35.7 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000026355 Mcm6 ENSMUST00000027601 ENSMUSP00000027601 TRANSLATION protein_coding - CCDS15252.1 1 821.0 9.0 15.8 17.0 631.3 0.0 -4,-5 1.0 30 22.0 PRINCIPAL:1 ENSMUSG00000026355 Mcm6 ENSMUST00000191454 - NO_TRANSLATION retained_intron ENSMUSG00000026355 Mcm6 ENSMUST00000190495 ENSMUSP00000140308 TRANSLATION protein_coding - CCDS83586.1 1 794.0 9.0 14.8 0.0 631.3 0.0 -4,-5 0.1091 29 16.002 MINOR ENSMUSG00000026355 Mcm6 ENSMUST00000188755 - NO_TRANSLATION retained_intron ENSMUSG00000067081 Asb18 ENSMUST00000086882 ENSMUSP00000084095 TRANSLATION protein_coding - CCDS15151.1 1 467.0 0.0 5.662 7.3 115.1 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000067081 Asb18 ENSMUST00000154228 ENSMUSP00000117767 TRANSLATION nonsense_mediated_decay - - 1 159.0 0.0 1.7 0.0 42.5 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000067081 Asb18 ENSMUST00000151330 ENSMUSP00000117836 TRANSLATION nonsense_mediated_decay - - 5 89.0 0.0 0.7 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000067081 Asb18 ENSMUST00000238685 ENSMUSP00000158643 TRANSLATION protein_coding - - - 438.0 0.0 5.462 2.2 131.1 0.0 -4,-6 0.2182 - 7.406 MINOR ENSMUSG00000067081 Asb18 ENSMUST00000097656 ENSMUSP00000095261 TRANSLATION protein_coding - - 5 203.0 0.0 3.53 0.0 52.0 0.0 -4,-5 0.0 - 2.306 MINOR ENSMUSG00000103421 Golt1a ENSMUST00000094557 ENSMUSP00000092136 TRANSLATION protein_coding - CCDS35709.1 1 133.0 0.0 3.13 35.7 57.5 0.0 -3,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000103421 Golt1a ENSMUST00000192465 ENSMUSP00000141960 TRANSLATION protein_coding,RT stop - 3 32.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000064294 Aox3 ENSMUST00000159014 - NO_TRANSLATION retained_intron ENSMUSG00000064294 Aox3 ENSMUST00000040999 ENSMUSP00000049391 TRANSLATION protein_coding - CCDS14969.1 1 1335.0 79.0 29.35 8.6 1088.4 0.0 -4,-5 1.0 32 21.0 PRINCIPAL:1 ENSMUSG00000064294 Aox3 ENSMUST00000162011 ENSMUSP00000140140 TRANSLATION protein_coding - - 1 270.0 19.0 5.75 0.0 138.3 0.0 -4,-5 0.0 6 0.0 MINOR ENSMUSG00000064294 Aox3 ENSMUST00000160815 - NO_TRANSLATION retained_intron ENSMUSG00000064294 Aox3 ENSMUST00000161549 - NO_TRANSLATION retained_intron ENSMUSG00000050967 Creg2 ENSMUST00000053355 ENSMUSP00000052871 TRANSLATION protein_coding - CCDS14908.1 1 288.0 0.0 3.2 3.2 172.6 0.0 2,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000098306 Gm28040 ENSMUST00000183489 ENSMUSP00000139189 TRANSLATION nonsense_mediated_decay,RT - CCDS35709.1 2 133.0 0.0 2.63 35.7 57.5 4.0 -3,-5 1.0 - -2.0 ALTERNATIVE:1 ENSMUSG00000098306 Gm28040 ENSMUST00000184603 ENSMUSP00000138922 TRANSLATION protein_coding,RT - - 2 173.0 0.0 2.33 0.0 57.5 4.0 -3,-5 0.0326 - -2.0 PRINCIPAL:5 ENSMUSG00000060715 1700019A02Rik ENSMUST00000072235 ENSMUSP00000072089 TRANSLATION protein_coding - CCDS48258.1 1 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8666 - 0.0 PRINCIPAL:2 ENSMUSG00000060715 1700019A02Rik ENSMUST00000190748 ENSMUSP00000139938 TRANSLATION protein_coding - - 3 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5812 - 0.0 ALTERNATIVE:2 ENSMUSG00000026121 Sema4c ENSMUST00000193382 ENSMUSP00000142034 TRANSLATION protein_coding stop - 5 37.0 0.0 0.2 0.0 0.0 0.0 3,-2 0.0008 - -2.0 MINOR ENSMUSG00000026121 Sema4c ENSMUST00000191785 - NO_TRANSLATION retained_intron ENSMUSG00000026121 Sema4c ENSMUST00000195160 - NO_TRANSLATION retained_intron ENSMUSG00000026121 Sema4c ENSMUST00000191677 ENSMUSP00000141263 TRANSLATION protein_coding - CCDS48240.1 5 834.0 0.0 9.118 11.8 530.0 0.0 3,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000026121 Sema4c ENSMUST00000114991 ENSMUSP00000110643 TRANSLATION protein_coding - CCDS48240.1 1 834.0 0.0 9.118 11.8 530.0 0.0 3,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000026121 Sema4c ENSMUST00000195339 ENSMUSP00000141833 TRANSLATION protein_coding stop - 1 36.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000026121 Sema4c ENSMUST00000191642 ENSMUSP00000142284 TRANSLATION protein_coding - CCDS48240.1 5 834.0 0.0 9.118 11.8 530.0 0.0 3,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000026121 Sema4c ENSMUST00000195620 ENSMUSP00000141527 TRANSLATION protein_coding - CCDS48240.1 1 834.0 0.0 9.118 11.8 530.0 0.0 3,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000026456 Cyb5r1 ENSMUST00000127412 ENSMUSP00000134354 TRANSLATION nonsense_mediated_decay start - 3 100.0 0.0 1.25 0.0 29.4 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000026456 Cyb5r1 ENSMUST00000174315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026456 Cyb5r1 ENSMUST00000172496 - NO_TRANSLATION retained_intron ENSMUSG00000026456 Cyb5r1 ENSMUST00000172795 ENSMUSP00000133842 TRANSLATION nonsense_mediated_decay start - 5 80.0 0.0 0.5 0.0 0.0 0.0 4,-1 0.0007 1 -2.0 MINOR ENSMUSG00000026456 Cyb5r1 ENSMUST00000173908 ENSMUSP00000134488 TRANSLATION protein_coding stop - 5 176.0 20.0 4.75 0.0 148.5 0.0 -4,-5 0.0003 5 -2.0 MINOR ENSMUSG00000026456 Cyb5r1 ENSMUST00000133686 - NO_TRANSLATION retained_intron ENSMUSG00000026456 Cyb5r1 ENSMUST00000186489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026456 Cyb5r1 ENSMUST00000027726 ENSMUSP00000027726 TRANSLATION protein_coding - CCDS15308.1 1 305.0 21.0 7.08 11.8 237.3 0.0 2,-3 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000026456 Cyb5r1 ENSMUST00000130836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026456 Cyb5r1 ENSMUST00000154237 ENSMUSP00000133385 TRANSLATION nonsense_mediated_decay - - 1 228.0 19.0 3.25 0.0 120.6 0.0 2,-3 0.0003 4 -2.0 MINOR ENSMUSG00000052331 Ankrd44 ENSMUST00000044359 ENSMUSP00000040327 TRANSLATION protein_coding - - 5 1011.0 0.0 18.1575 11.9 541.1 0.0 -4,-5 0.7781 21 14.092 MINOR ENSMUSG00000052331 Ankrd44 ENSMUST00000178685 - NO_TRANSLATION retained_intron ENSMUSG00000052331 Ankrd44 ENSMUST00000178935 - NO_TRANSLATION retained_intron ENSMUSG00000052331 Ankrd44 ENSMUST00000177679 ENSMUSP00000137216 TRANSLATION protein_coding stop - 2 126.0 0.0 2.8 0.0 47.6 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000052331 Ankrd44 ENSMUST00000178226 ENSMUSP00000136802 TRANSLATION protein_coding start/stop - 5 789.0 0.0 13.5575 0.0 447.4 0.0 -4,-5 0.0041 16 -2.0 MINOR ENSMUSG00000052331 Ankrd44 ENSMUST00000180189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052331 Ankrd44 ENSMUST00000179398 - NO_TRANSLATION retained_intron ENSMUSG00000052331 Ankrd44 ENSMUST00000179242 - NO_TRANSLATION retained_intron ENSMUSG00000052331 Ankrd44 ENSMUST00000189563 - NO_TRANSLATION retained_intron ENSMUSG00000052331 Ankrd44 ENSMUST00000177919 - NO_TRANSLATION retained_intron ENSMUSG00000052331 Ankrd44 ENSMUST00000178905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052331 Ankrd44 ENSMUST00000179030 ENSMUSP00000137616 TRANSLATION protein_coding - CCDS35566.2 1 993.0 0.0 17.9075 14.1 561.7 0.0 -4,-5 1.0 22 15.502 PRINCIPAL:1 ENSMUSG00000052331 Ankrd44 ENSMUST00000177704 - NO_TRANSLATION retained_intron ENSMUSG00000052331 Ankrd44 ENSMUST00000180327 - NO_TRANSLATION retained_intron ENSMUSG00000052331 Ankrd44 ENSMUST00000178156 ENSMUSP00000136831 TRANSLATION protein_coding start - 3 241.0 0.0 3.425 0.0 81.3 0.0 -2,-4 0.0 8 -2.0 MINOR ENSMUSG00000026167 Wnt10a ENSMUST00000187238 ENSMUSP00000139656 TRANSLATION protein_coding start - 5 96.0 0.0 0.6 0.0 59.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026167 Wnt10a ENSMUST00000006718 ENSMUSP00000006718 TRANSLATION protein_coding - CCDS15057.1 1 417.0 0.0 1.57 9.9 396.5 0.0 -2,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000114591 Gm47996 ENSMUST00000224757 ENSMUSP00000153493 TRANSLATION protein_coding - - - 300.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6028 - 0.0 PRINCIPAL:1 ENSMUSG00000026426 Arl8a ENSMUST00000027684 ENSMUSP00000027684 TRANSLATION protein_coding - CCDS15316.1 1 186.0 20.0 5.5 32.3 156.8 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000026426 Arl8a ENSMUST00000141177 - NO_TRANSLATION retained_intron ENSMUSG00000026426 Arl8a ENSMUST00000123344 - NO_TRANSLATION retained_intron ENSMUSG00000026426 Arl8a ENSMUST00000125774 ENSMUSP00000121545 TRANSLATION protein_coding start - 3 165.0 20.0 4.95 0.0 132.7 0.0 -4,-6 0.0003 2 -2.0 MINOR ENSMUSG00000040113 Ntmt2 ENSMUST00000160495 ENSMUSP00000124700 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 0.8 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000040113 Ntmt2 ENSMUST00000159679 ENSMUSP00000124211 TRANSLATION protein_coding - CCDS48420.1 1 283.0 0.0 3.8 9.6 239.1 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026024 Als2 ENSMUST00000188469 - NO_TRANSLATION retained_intron ENSMUSG00000026024 Als2 ENSMUST00000160945 ENSMUSP00000140990 TRANSLATION protein_coding stop - 2 69.0 0.0 0.3 0.0 31.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026024 Als2 ENSMUST00000159166 - NO_TRANSLATION retained_intron ENSMUSG00000026024 Als2 ENSMUST00000163058 ENSMUSP00000125753 TRANSLATION protein_coding - CCDS35583.1 1 1651.0 0.0 7.221 7.6 363.7 0.0 -4,-5 1.0 37 14.0 PRINCIPAL:1 ENSMUSG00000026024 Als2 ENSMUST00000027178 ENSMUSP00000027178 TRANSLATION protein_coding - CCDS35583.1 1 1651.0 0.0 7.221 7.6 363.7 0.0 -4,-5 1.0 37 14.0 PRINCIPAL:1 ENSMUSG00000040629 Mael ENSMUST00000038782 ENSMUSP00000045828 TRANSLATION protein_coding - CCDS15448.1 1 434.0 0.0 2.36 11.8 279.9 0.0 -4,-2 1.0 - 14.178 PRINCIPAL:1 ENSMUSG00000040629 Mael ENSMUST00000194057 ENSMUSP00000141652 TRANSLATION protein_coding - - 5 420.0 0.0 2.735 1.1 243.9 0.0 -4,-2 0.114 - 9.867 MINOR ENSMUSG00000060743 H3f3a ENSMUST00000081026 ENSMUSP00000079816 TRANSLATION protein_coding - - 5 135.0 0.0 3.43 36.9 170.8 0.0 -4,-7 0.8029 - 11.7 ALTERNATIVE:1 ENSMUSG00000060743 H3f3a ENSMUST00000159789 ENSMUSP00000125754 TRANSLATION protein_coding stop - 3 119.0 0.0 3.08 0.0 151.2 0.0 -4,-7 0.0003 - -2.0 MINOR ENSMUSG00000060743 H3f3a ENSMUST00000159685 ENSMUSP00000124040 TRANSLATION protein_coding stop - 2 52.0 0.0 1.33 0.0 33.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000060743 H3f3a ENSMUST00000162118 ENSMUSP00000123946 TRANSLATION protein_coding stop - 3 55.0 0.0 1.33 0.0 38.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000060743 H3f3a ENSMUST00000162814 ENSMUSP00000125104 TRANSLATION protein_coding - CCDS15573.1 3 136.0 0.0 3.58 36.9 181.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000060743 H3f3a ENSMUST00000159441 - NO_TRANSLATION retained_intron ENSMUSG00000060743 H3f3a ENSMUST00000161308 ENSMUSP00000124509 TRANSLATION protein_coding - CCDS15573.1 1 136.0 0.0 3.58 36.9 181.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000016262 Sertad4 ENSMUST00000125391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016262 Sertad4 ENSMUST00000155503 ENSMUSP00000142132 TRANSLATION protein_coding stop - 3 148.0 0.0 1.0 0.0 56.8 0.0 -4,-5 0.0542 - -2.0 MINOR ENSMUSG00000016262 Sertad4 ENSMUST00000016406 ENSMUSP00000016406 TRANSLATION protein_coding - CCDS15630.2 3 377.0 0.0 1.0 0.0 56.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000016262 Sertad4 ENSMUST00000155579 ENSMUSP00000116176 TRANSLATION protein_coding - CCDS15630.2 1 377.0 0.0 1.0 0.0 56.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071890 Mroh9 ENSMUST00000096608 ENSMUSP00000094365 TRANSLATION protein_coding - CCDS48419.1 1 891.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9424 - 0.0 PRINCIPAL:1 ENSMUSG00000037509 Arhgef4 ENSMUST00000162599 ENSMUSP00000124906 TRANSLATION protein_coding start - 5 628.0 0.0 8.325 0.0 163.7 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000037509 Arhgef4 ENSMUST00000047664 ENSMUSP00000035980 TRANSLATION protein_coding - CCDS14872.1 1 484.0 0.0 8.225 10.4 235.9 0.0 -4,-5 1.0 6 8.298 PRINCIPAL:2 ENSMUSG00000037509 Arhgef4 ENSMUST00000159059 - NO_TRANSLATION retained_intron ENSMUSG00000037509 Arhgef4 ENSMUST00000159747 ENSMUSP00000124213 TRANSLATION protein_coding - - 5 1855.0 0.0 9.325 0.0 239.5 0.0 -4,-6 0.2722 14 8.0 ALTERNATIVE:2 ENSMUSG00000037509 Arhgef4 ENSMUST00000162760 - NO_TRANSLATION retained_intron ENSMUSG00000037509 Arhgef4 ENSMUST00000160855 ENSMUSP00000124207 TRANSLATION nonsense_mediated_decay - - 1 216.0 0.0 3.35 0.0 101.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037509 Arhgef4 ENSMUST00000159021 ENSMUSP00000124467 TRANSLATION protein_coding stop - 5 273.0 0.0 4.45 0.0 129.1 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000034486 Gbx2 ENSMUST00000036954 ENSMUSP00000048508 TRANSLATION protein_coding - CCDS15150.1 1 348.0 0.0 0.6 13.6 82.3 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000034486 Gbx2 ENSMUST00000187633 - NO_TRANSLATION retained_intron ENSMUSG00000007097 Atp1a2 ENSMUST00000131751 - NO_TRANSLATION retained_intron ENSMUSG00000007097 Atp1a2 ENSMUST00000097464 ENSMUSP00000095072 TRANSLATION protein_coding - - 5 947.0 11.0 18.25 0.0 424.7 7.0 -4,-6 0.0154 29 10.332 MINOR ENSMUSG00000007097 Atp1a2 ENSMUST00000191781 - NO_TRANSLATION retained_intron ENSMUSG00000007097 Atp1a2 ENSMUST00000137679 - NO_TRANSLATION retained_intron ENSMUSG00000007097 Atp1a2 ENSMUST00000085913 ENSMUSP00000083077 TRANSLATION protein_coding - CCDS35782.1 1 1020.0 11.0 20.58 33.8 474.8 9.0 -4,-6 1.0 29 22.0 PRINCIPAL:1 ENSMUSG00000056050 Mia3 ENSMUST00000194543 ENSMUSP00000141268 TRANSLATION protein_coding - - 1 1930.0 0.0 1.0735 0.0 29.1 0.0 3,-4 1.0 54 12.0 PRINCIPAL:1 ENSMUSG00000056050 Mia3 ENSMUST00000192090 - NO_TRANSLATION retained_intron ENSMUSG00000056050 Mia3 ENSMUST00000195233 ENSMUSP00000141853 TRANSLATION protein_coding stop - 5 233.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0015 6 -2.0 MINOR ENSMUSG00000036707 Cab39 ENSMUST00000126962 ENSMUSP00000116086 TRANSLATION protein_coding stop - 3 38.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036707 Cab39 ENSMUST00000130754 ENSMUSP00000114690 TRANSLATION protein_coding stop - 3 104.0 0.0 2.33 0.0 88.7 0.0 -4,-5 0.0105 2 -2.0 MINOR ENSMUSG00000036707 Cab39 ENSMUST00000113360 ENSMUSP00000108987 TRANSLATION protein_coding - CCDS15112.1 1 341.0 0.0 7.58 36.9 475.6 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000036707 Cab39 ENSMUST00000097666 ENSMUSP00000095270 TRANSLATION protein_coding - CCDS15112.1 5 341.0 0.0 7.58 36.9 475.6 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000036707 Cab39 ENSMUST00000187623 - NO_TRANSLATION retained_intron ENSMUSG00000026678 Rgs5 ENSMUST00000027997 ENSMUSP00000027997 TRANSLATION protein_coding - CCDS15464.1 1 181.0 0.0 2.95 33.8 121.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026678 Rgs5 ENSMUST00000152809 ENSMUSP00000141496 TRANSLATION protein_coding - CCDS83629.1 2 74.0 0.0 0.95 0.0 0.0 0.0 -4,-5 0.0141 - 1.932 MINOR ENSMUSG00000067851 Arfgef1 ENSMUST00000156563 - NO_TRANSLATION retained_intron ENSMUSG00000067851 Arfgef1 ENSMUST00000142497 - NO_TRANSLATION retained_intron ENSMUSG00000067851 Arfgef1 ENSMUST00000128834 - NO_TRANSLATION retained_intron ENSMUSG00000067851 Arfgef1 ENSMUST00000186813 - NO_TRANSLATION retained_intron ENSMUSG00000067851 Arfgef1 ENSMUST00000187417 - NO_TRANSLATION retained_intron ENSMUSG00000067851 Arfgef1 ENSMUST00000088615 ENSMUSP00000085986 TRANSLATION protein_coding - CCDS35512.1 5 1846.0 0.0 8.36 14.8 678.8 0.0 -4,-5 1.0 39 16.0 PRINCIPAL:1 ENSMUSG00000067851 Arfgef1 ENSMUST00000131556 ENSMUSP00000118805 TRANSLATION protein_coding - - 5 1054.0 0.0 8.36 0.0 556.5 0.0 -4,-5 0.0868 19 6.0 MINOR ENSMUSG00000067851 Arfgef1 ENSMUST00000186720 - NO_TRANSLATION retained_intron ENSMUSG00000026621 Mtarc1 ENSMUST00000189492 ENSMUSP00000139716 TRANSLATION protein_coding - - 5 235.0 0.0 5.5 4.0 174.9 0.0 -4,-6 0.1997 4 6.432 MINOR ENSMUSG00000026621 Mtarc1 ENSMUST00000048462 ENSMUSP00000035804 TRANSLATION protein_coding - CCDS69987.1 1 340.0 0.0 6.63 7.1 246.4 0.0 -2,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000004552 Ctse ENSMUST00000112411 ENSMUSP00000108030 TRANSLATION protein_coding - - 5 364.0 5.0 6.2 0.1 398.5 0.0 3,-2 0.0082 3 11.96 MINOR ENSMUSG00000004552 Ctse ENSMUST00000141061 - NO_TRANSLATION retained_intron ENSMUSG00000004552 Ctse ENSMUST00000073350 ENSMUSP00000073072 TRANSLATION protein_coding - CCDS15271.1 1 397.0 5.0 7.2 2.8 449.2 0.0 3,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000039748 Exo1 ENSMUST00000195196 ENSMUSP00000141870 TRANSLATION protein_coding stop - 5 105.0 2.0 2.33 0.0 83.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039748 Exo1 ENSMUST00000193610 - NO_TRANSLATION retained_intron ENSMUSG00000039748 Exo1 ENSMUST00000191680 ENSMUSP00000141526 TRANSLATION protein_coding start/stop - 3 246.0 0.0 1.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039748 Exo1 ENSMUST00000193858 ENSMUSP00000141568 TRANSLATION protein_coding stop - 5 189.0 8.0 4.25 0.0 128.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039748 Exo1 ENSMUST00000194636 ENSMUSP00000141316 TRANSLATION protein_coding start - 3 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039748 Exo1 ENSMUST00000039725 ENSMUSP00000039376 TRANSLATION protein_coding - CCDS15551.1 1 837.0 9.0 8.43 0.8 171.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039748 Exo1 ENSMUST00000194306 ENSMUSP00000141770 TRANSLATION protein_coding stop - 3 223.0 7.0 5.25 0.0 164.6 0.0 -4,-5 0.0071 - -2.0 MINOR ENSMUSG00000039748 Exo1 ENSMUST00000193822 ENSMUSP00000141624 TRANSLATION protein_coding stop - 5 191.0 8.0 4.58 0.0 128.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039748 Exo1 ENSMUST00000192378 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039748 Exo1 ENSMUST00000194816 ENSMUSP00000142091 TRANSLATION protein_coding start - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000048096 Lmod1 ENSMUST00000059352 ENSMUSP00000061597 TRANSLATION protein_coding - CCDS35718.1 1 595.0 0.0 0.93 2.8 87.6 0.0 -4,-5 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000026082 Rev1 ENSMUST00000192697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026082 Rev1 ENSMUST00000192594 ENSMUSP00000141379 TRANSLATION protein_coding stop - 2 138.0 0.0 2.85 0.0 41.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026082 Rev1 ENSMUST00000194815 ENSMUSP00000141815 TRANSLATION nonsense_mediated_decay start - 5 93.0 0.0 0.95 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026082 Rev1 ENSMUST00000193008 - NO_TRANSLATION retained_intron ENSMUSG00000026082 Rev1 ENSMUST00000193697 ENSMUSP00000141560 TRANSLATION protein_coding stop - 3 98.0 0.0 1.6 0.0 24.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026082 Rev1 ENSMUST00000193472 ENSMUSP00000141875 TRANSLATION nonsense_mediated_decay start - 3 82.0 2.0 2.25 0.0 28.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026082 Rev1 ENSMUST00000027251 ENSMUSP00000027251 TRANSLATION protein_coding - CCDS14899.1 1 1249.0 5.0 16.2 4.1 410.3 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000026082 Rev1 ENSMUST00000195383 ENSMUSP00000141647 TRANSLATION protein_coding stop - 5 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0014 - -2.0 MINOR ENSMUSG00000026082 Rev1 ENSMUST00000193113 - NO_TRANSLATION retained_intron ENSMUSG00000026082 Rev1 ENSMUST00000194650 - NO_TRANSLATION retained_intron ENSMUSG00000026082 Rev1 ENSMUST00000193922 - NO_TRANSLATION retained_intron ENSMUSG00000052534 Pbx1 ENSMUST00000097471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052534 Pbx1 ENSMUST00000072863 ENSMUSP00000072640 TRANSLATION protein_coding - CCDS15462.1 1 347.0 0.0 2.2 33.5 386.1 0.0 -4,-5 0.9244 1 11.62 ALTERNATIVE:1 ENSMUSG00000052534 Pbx1 ENSMUST00000064438 ENSMUSP00000066385 TRANSLATION protein_coding - CCDS78739.1 1 339.0 0.0 1.2 0.0 359.7 0.0 -4,-5 0.0202 1 4.27 MINOR ENSMUSG00000052534 Pbx1 ENSMUST00000176790 ENSMUSP00000134925 TRANSLATION protein_coding - CCDS15462.1 1 347.0 0.0 2.2 33.5 386.1 0.0 -4,-5 0.9244 1 11.62 ALTERNATIVE:1 ENSMUSG00000052534 Pbx1 ENSMUST00000188912 ENSMUSP00000140606 TRANSLATION protein_coding - CCDS15462.1 1 347.0 0.0 2.2 33.5 386.1 0.0 -4,-5 0.9244 1 11.62 ALTERNATIVE:1 ENSMUSG00000052534 Pbx1 ENSMUST00000176540 ENSMUSP00000135516 TRANSLATION protein_coding - CCDS15461.1 1 430.0 0.0 2.2 36.9 386.1 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000052534 Pbx1 ENSMUST00000176482 - NO_TRANSLATION retained_intron ENSMUSG00000052534 Pbx1 ENSMUST00000176791 - NO_TRANSLATION retained_intron ENSMUSG00000056055 Sag ENSMUST00000077772 ENSMUSP00000076948 TRANSLATION protein_coding - CCDS35656.1 1 403.0 13.0 10.22 3.7 205.3 0.0 -4,-7 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000056055 Sag ENSMUST00000155393 - NO_TRANSLATION retained_intron ENSMUSG00000056055 Sag ENSMUST00000136708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056055 Sag ENSMUST00000128761 - NO_TRANSLATION retained_intron ENSMUSG00000056055 Sag ENSMUST00000130886 - NO_TRANSLATION retained_intron ENSMUSG00000056055 Sag ENSMUST00000144334 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056055 Sag ENSMUST00000156381 - NO_TRANSLATION retained_intron ENSMUSG00000056055 Sag ENSMUST00000145385 - NO_TRANSLATION retained_intron ENSMUSG00000096094 A630095N17Rik ENSMUST00000179573 ENSMUSP00000136333 TRANSLATION protein_coding - CCDS56633.1 1 78.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.8367 - 0.0 PRINCIPAL:2 ENSMUSG00000096094 A630095N17Rik ENSMUST00000191271 ENSMUSP00000140071 TRANSLATION nonsense_mediated_decay - - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0156 - -2.0 MINOR ENSMUSG00000096094 A630095N17Rik ENSMUST00000180101 ENSMUSP00000135937 TRANSLATION protein_coding - CCDS56634.1 3 116.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.1695 - 0.0 ALTERNATIVE:2 ENSMUSG00000025932 Eya1 ENSMUST00000080664 ENSMUSP00000079493 TRANSLATION protein_coding - CCDS56621.1 1 558.0 6.0 6.0 8.1 0.0 0.0 -4,-6 0.7262 1 13.832 MINOR ENSMUSG00000025932 Eya1 ENSMUST00000185453 ENSMUSP00000141072 TRANSLATION protein_coding stop - 3 184.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.009 - -2.0 MINOR ENSMUSG00000025932 Eya1 ENSMUST00000185329 - NO_TRANSLATION retained_intron ENSMUSG00000025932 Eya1 ENSMUST00000027066 ENSMUSP00000027066 TRANSLATION protein_coding - CCDS78545.1 5 591.0 6.0 6.0 16.5 0.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:4 ENSMUSG00000025932 Eya1 ENSMUST00000189526 ENSMUSP00000140619 TRANSLATION protein_coding start - 2 118.0 4.0 1.75 0.0 0.0 0.0 -4,-6 0.0033 - -2.0 MINOR ENSMUSG00000025932 Eya1 ENSMUST00000190337 ENSMUSP00000141112 TRANSLATION protein_coding - CCDS78545.1 1 591.0 6.0 6.0 16.5 0.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:4 ENSMUSG00000025932 Eya1 ENSMUST00000188857 ENSMUSP00000140171 TRANSLATION protein_coding stop - 3 185.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0121 - -2.0 MINOR ENSMUSG00000025932 Eya1 ENSMUST00000187790 ENSMUSP00000139542 TRANSLATION protein_coding stop - 3 139.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0078 - -2.0 MINOR ENSMUSG00000025932 Eya1 ENSMUST00000168081 ENSMUSP00000126383 TRANSLATION protein_coding - CCDS78546.1 1 587.0 6.0 6.0 16.5 0.0 0.0 -4,-5 0.9871 1 16.0 ALTERNATIVE:1 ENSMUSG00000041559 Fmod ENSMUST00000162779 ENSMUSP00000124896 TRANSLATION protein_coding stop - 3 83.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000041559 Fmod ENSMUST00000048183 ENSMUSP00000035489 TRANSLATION protein_coding - CCDS15301.1 1 376.0 0.0 2.0 12.4 149.7 0.0 4,-1 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000045174 Amer3 ENSMUST00000052670 ENSMUSP00000054748 TRANSLATION protein_coding - CCDS14871.1 1 780.0 0.0 0.0 0.0 119.3 0.0 -4,-7 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000025777 Gdap1 ENSMUST00000189465 - NO_TRANSLATION retained_intron ENSMUSG00000025777 Gdap1 ENSMUST00000189736 ENSMUSP00000140406 TRANSLATION nonsense_mediated_decay - - 5 60.0 3.0 1.3 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025777 Gdap1 ENSMUST00000026879 ENSMUSP00000026879 TRANSLATION protein_coding - CCDS14834.1 1 358.0 11.0 6.3 11.8 98.6 0.0 -4,-6 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000025777 Gdap1 ENSMUST00000150457 - NO_TRANSLATION retained_intron ENSMUSG00000102976 Zc3h11a ENSMUST00000192107 - NO_TRANSLATION retained_intron ENSMUSG00000102976 Zc3h11a ENSMUST00000191896 ENSMUSP00000141255 TRANSLATION protein_coding - CCDS15297.1 1 792.0 12.0 1.05 3.4 192.5 0.0 -4,-5 1.0 23 19.0 PRINCIPAL:1 ENSMUSG00000102976 Zc3h11a ENSMUST00000192148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102976 Zc3h11a ENSMUST00000195424 ENSMUSP00000142066 TRANSLATION protein_coding,RT stop - 5 189.0 12.0 1.05 0.0 192.5 0.0 -4,-5 0.0474 - -2.0 MINOR ENSMUSG00000102976 Zc3h11a ENSMUST00000191705 - NO_TRANSLATION retained_intron ENSMUSG00000102976 Zc3h11a ENSMUST00000192775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102976 Zc3h11a ENSMUST00000195067 ENSMUSP00000141825 TRANSLATION protein_coding stop - 3 40.0 5.0 0.55 0.0 84.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000102976 Zc3h11a ENSMUST00000191932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102976 Zc3h11a ENSMUST00000191828 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102976 Zc3h11a ENSMUST00000193504 ENSMUSP00000141895 TRANSLATION protein_coding stop - 2 84.0 12.0 1.05 0.0 169.0 0.0 -4,-5 0.0203 1 -2.0 MINOR ENSMUSG00000102976 Zc3h11a ENSMUST00000194668 ENSMUSP00000141727 TRANSLATION protein_coding stop - 3 133.0 12.0 1.05 0.0 192.5 0.0 -4,-5 0.0486 3 -2.0 MINOR ENSMUSG00000102976 Zc3h11a ENSMUST00000195669 ENSMUSP00000142009 TRANSLATION protein_coding start/stop - 3 194.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 6 -2.0 MINOR ENSMUSG00000026427 Eif2d ENSMUST00000131855 ENSMUSP00000137678 TRANSLATION nonsense_mediated_decay - - 1 587.0 0.0 10.68 0.0 56.4 0.0 -4,-1 0.065 13 -2.0 MINOR ENSMUSG00000026427 Eif2d ENSMUST00000151874 ENSMUSP00000138061 TRANSLATION nonsense_mediated_decay - CCDS48354.1 5 570.0 0.0 11.43 1.1 60.4 0.0 -4,-1 1.0 - -2.0 MINOR ENSMUSG00000026427 Eif2d ENSMUST00000149119 ENSMUSP00000137887 TRANSLATION nonsense_mediated_decay - - 1 176.0 0.0 4.25 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000026427 Eif2d ENSMUST00000112446 ENSMUSP00000108065 TRANSLATION protein_coding - CCDS35702.1 1 552.0 0.0 10.68 0.0 56.1 0.0 -4,-1 0.196 13 10.074 MINOR ENSMUSG00000026427 Eif2d ENSMUST00000139468 - NO_TRANSLATION retained_intron ENSMUSG00000026427 Eif2d ENSMUST00000068791 ENSMUSP00000067461 TRANSLATION protein_coding - - 1 453.0 0.0 9.08 0.0 0.0 0.0 -4,-1 0.0017 9 1.302 MINOR ENSMUSG00000026427 Eif2d ENSMUST00000153651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026427 Eif2d ENSMUST00000068805 ENSMUSP00000063894 TRANSLATION protein_coding - CCDS48354.1 1 570.0 0.0 11.43 1.1 60.4 0.0 -4,-1 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000025962 Fastkd2 ENSMUST00000134454 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025962 Fastkd2 ENSMUST00000148758 - NO_TRANSLATION retained_intron ENSMUSG00000025962 Fastkd2 ENSMUST00000128621 - NO_TRANSLATION retained_intron ENSMUSG00000025962 Fastkd2 ENSMUST00000123945 - NO_TRANSLATION retained_intron ENSMUSG00000025962 Fastkd2 ENSMUST00000131478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025962 Fastkd2 ENSMUST00000027103 ENSMUSP00000027103 TRANSLATION protein_coding - CCDS15001.1 1 689.0 0.0 1.17 1.8 110.8 0.0 -3,0 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000026150 Mff ENSMUST00000161648 ENSMUSP00000124164 TRANSLATION protein_coding - - 5 243.0 0.0 0.0 4.6 359.6 0.0 -4,-5 0.2355 2 1.074 MINOR ENSMUSG00000026150 Mff ENSMUST00000188333 - NO_TRANSLATION retained_intron ENSMUSG00000026150 Mff ENSMUST00000160786 ENSMUSP00000125230 TRANSLATION protein_coding - CCDS78631.1 1 238.0 0.0 0.0 7.7 375.2 0.0 -4,-5 0.5089 3 2.0 MINOR ENSMUSG00000026150 Mff ENSMUST00000161572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026150 Mff ENSMUST00000162794 - NO_TRANSLATION retained_intron ENSMUSG00000026150 Mff ENSMUST00000073025 ENSMUSP00000072784 TRANSLATION protein_coding - CCDS78630.1 1 239.0 0.0 0.0 7.7 373.4 0.0 -4,-5 0.5164 3 2.0 MINOR ENSMUSG00000026150 Mff ENSMUST00000162056 - NO_TRANSLATION retained_intron ENSMUSG00000026150 Mff ENSMUST00000160744 ENSMUSP00000125629 TRANSLATION protein_coding start - 3 137.0 0.0 0.0 0.0 213.7 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000026150 Mff ENSMUST00000160044 ENSMUSP00000125005 TRANSLATION protein_coding start/stop - 1 145.0 0.0 0.0 0.0 166.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026150 Mff ENSMUST00000162003 ENSMUSP00000124334 TRANSLATION protein_coding - - 5 316.0 0.0 0.0 3.9 461.2 0.0 -4,-5 0.4861 5 0.866 MINOR ENSMUSG00000026150 Mff ENSMUST00000160750 ENSMUSP00000125223 TRANSLATION protein_coding start/stop - 3 220.0 0.0 0.0 0.0 303.7 0.0 -4,-5 0.0013 2 -2.0 MINOR ENSMUSG00000026150 Mff ENSMUST00000159279 ENSMUSP00000123713 TRANSLATION protein_coding start/stop - 1 147.0 0.0 0.0 0.0 195.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026150 Mff ENSMUST00000160972 ENSMUSP00000124200 TRANSLATION protein_coding - CCDS78632.1 1 218.0 0.0 0.0 6.8 223.2 0.0 -4,-5 0.616 2 1.732 MINOR ENSMUSG00000026150 Mff ENSMUST00000160632 - NO_TRANSLATION retained_intron ENSMUSG00000026150 Mff ENSMUST00000162573 - NO_TRANSLATION retained_intron ENSMUSG00000026150 Mff ENSMUST00000078332 ENSMUSP00000077446 TRANSLATION protein_coding - CCDS15098.1 1 291.0 0.0 0.0 5.7 469.5 0.0 -4,-5 1.0 5 3.402 PRINCIPAL:1 ENSMUSG00000026620 Mark1 ENSMUST00000027929 ENSMUSP00000027929 TRANSLATION protein_coding - CCDS35817.1 1 795.0 18.0 8.96 19.2 356.2 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000026620 Mark1 ENSMUST00000192657 ENSMUSP00000142314 TRANSLATION protein_coding stop - 5 153.0 10.0 3.33 0.0 187.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000013593 Ndufs2 ENSMUST00000013737 ENSMUSP00000013737 TRANSLATION protein_coding - CCDS15484.1 1 463.0 0.0 10.99 20.1 431.7 0.0 -4,0 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000013593 Ndufs2 ENSMUST00000111318 ENSMUSP00000106950 TRANSLATION protein_coding - - 5 437.0 0.0 10.24 1.0 370.4 0.0 -4,0 0.0266 19 6.822 MINOR ENSMUSG00000013593 Ndufs2 ENSMUST00000138069 - NO_TRANSLATION retained_intron ENSMUSG00000013593 Ndufs2 ENSMUST00000136976 - NO_TRANSLATION retained_intron ENSMUSG00000013593 Ndufs2 ENSMUST00000191871 ENSMUSP00000141942 TRANSLATION protein_coding stop - 5 145.0 0.0 3.0 0.0 39.0 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000013593 Ndufs2 ENSMUST00000131286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013593 Ndufs2 ENSMUST00000150108 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013593 Ndufs2 ENSMUST00000194778 ENSMUSP00000141370 TRANSLATION protein_coding stop - 5 231.0 0.0 5.41 0.0 79.4 0.0 -4,-6 0.0 10 -2.0 MINOR ENSMUSG00000026201 Stk16 ENSMUST00000142052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026201 Stk16 ENSMUST00000156012 - NO_TRANSLATION retained_intron ENSMUSG00000026201 Stk16 ENSMUST00000139627 - NO_TRANSLATION retained_intron ENSMUSG00000026201 Stk16 ENSMUST00000189242 - NO_TRANSLATION retained_intron ENSMUSG00000026201 Stk16 ENSMUST00000189698 ENSMUSP00000140329 TRANSLATION protein_coding stop - 5 219.0 0.0 4.75 0.0 108.8 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000026201 Stk16 ENSMUST00000027401 ENSMUSP00000027401 TRANSLATION protein_coding - CCDS15067.1 1 305.0 0.0 6.75 27.9 156.1 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000026201 Stk16 ENSMUST00000135484 - NO_TRANSLATION retained_intron ENSMUSG00000026201 Stk16 ENSMUST00000188460 ENSMUSP00000139998 TRANSLATION protein_coding stop - 5 187.0 0.0 4.75 2.1 77.6 0.0 -4,-6 0.0278 3 -2.0 MINOR ENSMUSG00000026201 Stk16 ENSMUST00000191108 ENSMUSP00000139846 TRANSLATION nonsense_mediated_decay - - 1 227.0 0.0 3.915 0.1 94.0 0.0 -4,-6 0.0003 3 -2.0 MINOR ENSMUSG00000026201 Stk16 ENSMUST00000123825 ENSMUSP00000122688 TRANSLATION protein_coding stop - 2 132.0 0.0 1.75 0.0 38.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026201 Stk16 ENSMUST00000144355 ENSMUSP00000115964 TRANSLATION protein_coding stop - 2 132.0 0.0 1.75 0.0 38.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026201 Stk16 ENSMUST00000145144 - NO_TRANSLATION retained_intron ENSMUSG00000026201 Stk16 ENSMUST00000126328 - NO_TRANSLATION retained_intron ENSMUSG00000026201 Stk16 ENSMUST00000186350 - NO_TRANSLATION retained_intron ENSMUSG00000026201 Stk16 ENSMUST00000186492 - NO_TRANSLATION retained_intron ENSMUSG00000026201 Stk16 ENSMUST00000131738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026424 Gpr37l1 ENSMUST00000027682 ENSMUSP00000027682 TRANSLATION protein_coding - CCDS48371.1 1 481.0 0.0 0.4 4.5 84.0 0.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000026547 Tagln2 ENSMUST00000138296 - NO_TRANSLATION retained_intron ENSMUSG00000026547 Tagln2 ENSMUST00000192460 ENSMUSP00000141983 TRANSLATION protein_coding stop - 2 90.0 0.0 2.0 0.0 43.3 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000026547 Tagln2 ENSMUST00000111230 ENSMUSP00000106861 TRANSLATION protein_coding - CCDS35784.1 1 199.0 0.0 4.75 36.9 134.0 0.0 -4,-6 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000026547 Tagln2 ENSMUST00000111228 ENSMUSP00000106859 TRANSLATION protein_coding - CCDS35784.1 3 199.0 0.0 4.75 36.9 134.0 0.0 -4,-6 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000040710 St8sia4 ENSMUST00000186853 - NO_TRANSLATION retained_intron ENSMUSG00000040710 St8sia4 ENSMUST00000187936 - NO_TRANSLATION retained_intron ENSMUSG00000040710 St8sia4 ENSMUST00000043336 ENSMUSP00000043477 TRANSLATION protein_coding - CCDS15201.1 1 359.0 19.0 3.5 27.4 256.3 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000040710 St8sia4 ENSMUST00000189556 ENSMUSP00000140534 TRANSLATION protein_coding - CCDS78661.1 1 266.0 9.0 2.5 0.0 153.5 0.0 -4,-5 0.04 2 4.002 MINOR ENSMUSG00000026019 Wdr12 ENSMUST00000136461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026019 Wdr12 ENSMUST00000122038 ENSMUSP00000113148 TRANSLATION protein_coding - CCDS14988.1 1 423.0 0.0 10.8 31.9 191.2 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000026019 Wdr12 ENSMUST00000027173 ENSMUSP00000027173 TRANSLATION protein_coding - CCDS14988.1 1 423.0 0.0 10.8 31.9 191.2 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000026019 Wdr12 ENSMUST00000141417 ENSMUSP00000117747 TRANSLATION protein_coding stop - 5 151.0 0.0 4.5 0.0 78.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026019 Wdr12 ENSMUST00000133767 - NO_TRANSLATION retained_intron ENSMUSG00000026019 Wdr12 ENSMUST00000147413 - NO_TRANSLATION retained_intron ENSMUSG00000026019 Wdr12 ENSMUST00000143342 ENSMUSP00000117391 TRANSLATION protein_coding stop - 5 151.0 0.0 4.5 0.0 78.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026019 Wdr12 ENSMUST00000117438 ENSMUSP00000113494 TRANSLATION protein_coding - CCDS14988.1 1 423.0 0.0 10.8 31.9 191.2 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000038806 Sde2 ENSMUST00000194948 - NO_TRANSLATION retained_intron ENSMUSG00000038806 Sde2 ENSMUST00000038091 ENSMUSP00000037890 TRANSLATION protein_coding - CCDS15574.1 1 448.0 0.0 2.75 0.4 97.4 0.0 -4,-7 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000026240 Cops7b ENSMUST00000027446 ENSMUSP00000027446 TRANSLATION protein_coding - CCDS15122.1 1 264.0 0.0 6.88 26.1 32.3 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000026240 Cops7b ENSMUST00000149542 ENSMUSP00000122317 TRANSLATION protein_coding stop - 3 199.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0003 - -2.0 MINOR ENSMUSG00000026240 Cops7b ENSMUST00000127219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026240 Cops7b ENSMUST00000138280 ENSMUSP00000115056 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 1.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026240 Cops7b ENSMUST00000121534 ENSMUSP00000113587 TRANSLATION protein_coding - CCDS15122.1 5 264.0 0.0 6.88 26.1 32.3 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000026240 Cops7b ENSMUST00000122884 ENSMUSP00000119807 TRANSLATION nonsense_mediated_decay - - 1 103.0 0.0 2.2995 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038034 Igsf8 ENSMUST00000128508 ENSMUSP00000122611 TRANSLATION protein_coding stop - 5 149.0 0.0 0.0 0.0 35.2 0.0 4,-2 0.0856 3 -2.0 MINOR ENSMUSG00000038034 Igsf8 ENSMUST00000150598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038034 Igsf8 ENSMUST00000039506 ENSMUSP00000041232 TRANSLATION protein_coding - CCDS15511.1 1 611.0 0.0 0.782 0.7 35.2 3.0 4,-2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000038034 Igsf8 ENSMUST00000139528 ENSMUSP00000134280 TRANSLATION protein_coding - - 2 548.0 0.0 0.782 0.1 0.0 3.0 -4,-5 0.048 10 6.0 MINOR ENSMUSG00000038034 Igsf8 ENSMUST00000085912 ENSMUSP00000083076 TRANSLATION protein_coding - CCDS15511.1 5 611.0 0.0 0.782 0.7 35.2 3.0 4,-2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000038034 Igsf8 ENSMUST00000155363 - NO_TRANSLATION retained_intron ENSMUSG00000038034 Igsf8 ENSMUST00000195659 ENSMUSP00000141313 TRANSLATION protein_coding start - 3 107.0 0.0 0.0 0.0 0.0 3.0 -4,-6 0.003 - -2.0 MINOR ENSMUSG00000038034 Igsf8 ENSMUST00000194505 ENSMUSP00000141588 TRANSLATION protein_coding start - 3 208.0 0.0 0.4 0.0 0.0 1.0 -4,-2 0.0022 1 -2.0 MINOR ENSMUSG00000038793 Lefty1 ENSMUST00000037361 ENSMUSP00000041427 TRANSLATION protein_coding - CCDS15577.1 1 368.0 0.0 0.91 10.9 80.6 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038793 Lefty1 ENSMUST00000132087 - NO_TRANSLATION retained_intron ENSMUSG00000057072 Spata45 ENSMUST00000077889 ENSMUSP00000077049 TRANSLATION protein_coding - CCDS48483.1 2 97.0 0.0 0.0 7.3 0.0 0.0 -4,-5 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000057072 Spata45 ENSMUST00000192151 ENSMUSP00000141721 TRANSLATION protein_coding - CCDS48483.1 5 97.0 0.0 0.0 7.3 0.0 0.0 -4,-5 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000066797 Zfp648 ENSMUST00000086195 ENSMUSP00000083370 TRANSLATION protein_coding - CCDS56646.1 3 525.0 40.0 0.8 0.0 187.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000038768 Degs1l ENSMUST00000036819 ENSMUSP00000042889 TRANSLATION protein_coding - CCDS35809.1 1 320.0 0.0 2.75 7.9 127.6 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049608 Gpr55 ENSMUST00000086975 ENSMUSP00000084196 TRANSLATION protein_coding - CCDS15115.1 1 327.0 0.0 0.8 0.7 95.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026319 Relch ENSMUST00000086721 ENSMUSP00000083926 TRANSLATION protein_coding - - 5 1216.0 0.0 0.0 9.6 0.0 0.0 -4,-5 0.8506 36 3.0 ALTERNATIVE:1 ENSMUSG00000026319 Relch ENSMUST00000191293 - NO_TRANSLATION retained_intron ENSMUSG00000026319 Relch ENSMUST00000190501 ENSMUSP00000141162 TRANSLATION protein_coding - CCDS48334.1 1 1192.0 0.0 0.0 5.2 0.0 0.0 -4,-5 0.7201 36 1.464 MINOR ENSMUSG00000026319 Relch ENSMUST00000191150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026319 Relch ENSMUST00000190459 - NO_TRANSLATION retained_intron ENSMUSG00000026319 Relch ENSMUST00000188588 - NO_TRANSLATION retained_intron ENSMUSG00000026319 Relch ENSMUST00000185692 ENSMUSP00000139944 TRANSLATION nonsense_mediated_decay start - 5 82.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0134 3 -2.0 MINOR ENSMUSG00000026319 Relch ENSMUST00000186807 ENSMUSP00000140699 TRANSLATION nonsense_mediated_decay - - 1 354.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.026 10 -2.0 MINOR ENSMUSG00000026319 Relch ENSMUST00000185750 - NO_TRANSLATION retained_intron ENSMUSG00000026319 Relch ENSMUST00000188969 - NO_TRANSLATION retained_intron ENSMUSG00000026319 Relch ENSMUST00000189091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026319 Relch ENSMUST00000039173 ENSMUSP00000039178 TRANSLATION protein_coding - CCDS15206.1 1 1216.0 0.0 0.0 9.6 0.0 0.0 -4,-5 1.0 37 3.0 PRINCIPAL:3 ENSMUSG00000037924 Or10j5 ENSMUST00000215254 ENSMUSP00000149249 TRANSLATION protein_coding - CCDS15521.1 5 309.0 0.0 1.0 12.5 171.6 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037924 Or10j5 ENSMUST00000038432 ENSMUSP00000041524 TRANSLATION protein_coding - CCDS15521.1 - 309.0 0.0 1.0 12.5 171.6 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026622 Nek2 ENSMUST00000027931 ENSMUSP00000027931 TRANSLATION protein_coding - CCDS15623.1 1 443.0 19.0 5.22 24.5 211.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000026622 Nek2 ENSMUST00000136733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026622 Nek2 ENSMUST00000126446 - NO_TRANSLATION retained_intron ENSMUSG00000026622 Nek2 ENSMUST00000150839 - NO_TRANSLATION retained_intron ENSMUSG00000026544 Dusp23 ENSMUST00000027826 ENSMUSP00000027826 TRANSLATION protein_coding - CCDS15518.1 1 150.0 10.0 2.0 18.9 47.7 0.0 -4,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000026553 Copa ENSMUST00000150298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026553 Copa ENSMUST00000142765 - NO_TRANSLATION retained_intron ENSMUSG00000026553 Copa ENSMUST00000027833 ENSMUSP00000027833 TRANSLATION protein_coding - - 5 1233.0 0.0 27.74156 17.3 1203.4 0.0 -4,-7 0.7435 61 13.682 MINOR ENSMUSG00000026553 Copa ENSMUST00000138407 - NO_TRANSLATION retained_intron ENSMUSG00000026553 Copa ENSMUST00000124289 ENSMUSP00000118899 TRANSLATION nonsense_mediated_decay - - 5 78.0 0.0 1.3125 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026553 Copa ENSMUST00000133909 - NO_TRANSLATION retained_intron ENSMUSG00000026553 Copa ENSMUST00000122845 - NO_TRANSLATION retained_intron ENSMUSG00000026553 Copa ENSMUST00000135192 ENSMUSP00000118179 TRANSLATION protein_coding - CCDS35780.1 1 1224.0 0.0 27.698 28.5 1214.9 0.0 -4,-7 1.0 62 15.91 PRINCIPAL:1 ENSMUSG00000026553 Copa ENSMUST00000152403 ENSMUSP00000123214 TRANSLATION nonsense_mediated_decay start - 3 143.0 0.0 3.25 0.0 27.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026553 Copa ENSMUST00000126634 - NO_TRANSLATION retained_intron ENSMUSG00000040265 Dnm3 ENSMUST00000159763 ENSMUSP00000125356 TRANSLATION protein_coding - - 1 319.0 0.0 4.75 0.0 143.2 0.0 -4,-7 0.0007 4 0.6 MINOR ENSMUSG00000040265 Dnm3 ENSMUST00000161539 - NO_TRANSLATION retained_intron ENSMUSG00000040265 Dnm3 ENSMUST00000160665 ENSMUSP00000124593 TRANSLATION protein_coding - - 1 319.0 0.0 4.75 0.0 143.2 0.0 -4,-7 0.0007 4 0.6 MINOR ENSMUSG00000040265 Dnm3 ENSMUST00000162330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040265 Dnm3 ENSMUST00000070330 ENSMUSP00000064538 TRANSLATION protein_coding - CCDS48417.1 1 859.0 18.0 16.75 7.7 689.9 0.0 -4,-6 1.0 21 16.0 PRINCIPAL:4 ENSMUSG00000040265 Dnm3 ENSMUST00000161155 - NO_TRANSLATION retained_intron ENSMUSG00000040265 Dnm3 ENSMUST00000193110 - NO_TRANSLATION retained_intron ENSMUSG00000040265 Dnm3 ENSMUST00000160173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040265 Dnm3 ENSMUST00000161894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040265 Dnm3 ENSMUST00000195403 - NO_TRANSLATION retained_intron ENSMUSG00000040265 Dnm3 ENSMUST00000086074 ENSMUSP00000083241 TRANSLATION protein_coding - - 5 863.0 18.0 16.75 7.7 689.9 0.0 -4,-6 0.8361 21 16.0 ALTERNATIVE:1 ENSMUSG00000040265 Dnm3 ENSMUST00000195768 - NO_TRANSLATION retained_intron ENSMUSG00000049439 Cyp20a1 ENSMUST00000060608 ENSMUSP00000050823 TRANSLATION protein_coding - CCDS14990.1 1 462.0 0.0 5.69 32.6 154.9 0.0 1,-4 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000049439 Cyp20a1 ENSMUST00000114202 - NO_TRANSLATION retained_intron ENSMUSG00000049439 Cyp20a1 ENSMUST00000148443 ENSMUSP00000137471 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 0.5 0.0 0.0 0.0 1,-4 0.0015 - -2.0 MINOR ENSMUSG00000037432 Fer1l5 ENSMUST00000140452 ENSMUSP00000144430 TRANSLATION nonsense_mediated_decay start - 1 209.0 3.0 0.56 0.0 25.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037432 Fer1l5 ENSMUST00000202030 ENSMUSP00000143919 TRANSLATION nonsense_mediated_decay start - 1 261.0 0.0 0.0 0.0 38.6 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000037432 Fer1l5 ENSMUST00000179162 ENSMUSP00000142130 TRANSLATION protein_coding - CCDS78562.1 1 2038.0 9.0 4.446 0.0 379.1 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000026404 Ddx59 ENSMUST00000129218 - NO_TRANSLATION retained_intron ENSMUSG00000026404 Ddx59 ENSMUST00000149783 - NO_TRANSLATION retained_intron ENSMUSG00000026404 Ddx59 ENSMUST00000122959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026404 Ddx59 ENSMUST00000027655 ENSMUSP00000027655 TRANSLATION protein_coding - CCDS15326.1 1 619.0 13.0 4.5 5.9 254.5 0.0 -4,-5 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000026715 Serpinc1 ENSMUST00000195760 ENSMUSP00000141864 TRANSLATION protein_coding stop - 3 107.0 0.0 2.0 0.0 0.0 0.0 0,-3 0.0034 3 -2.0 MINOR ENSMUSG00000026715 Serpinc1 ENSMUST00000193477 - NO_TRANSLATION retained_intron ENSMUSG00000026715 Serpinc1 ENSMUST00000191936 ENSMUSP00000142122 TRANSLATION protein_coding - - 3 92.0 0.0 1.5 0.0 52.8 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000026715 Serpinc1 ENSMUST00000195438 ENSMUSP00000141834 TRANSLATION nonsense_mediated_decay - - 5 103.0 0.0 1.6 0.0 53.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026715 Serpinc1 ENSMUST00000194777 - NO_TRANSLATION retained_intron ENSMUSG00000026715 Serpinc1 ENSMUST00000064725 ENSMUSP00000068971 TRANSLATION protein_coding - CCDS15411.1 1 465.0 0.0 9.25 9.1 404.0 0.0 0,-3 1.0 20 15.0 PRINCIPAL:1 ENSMUSG00000026715 Serpinc1 ENSMUST00000194592 ENSMUSP00000141556 TRANSLATION protein_coding stop - 5 286.0 0.0 6.5 0.0 213.7 0.0 0,-3 0.0012 10 -2.0 MINOR ENSMUSG00000026715 Serpinc1 ENSMUST00000194455 ENSMUSP00000141885 TRANSLATION nonsense_mediated_decay start - 5 65.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026103 Gls ENSMUST00000114509 - NO_TRANSLATION retained_intron ENSMUSG00000026103 Gls ENSMUST00000155587 ENSMUSP00000115358 TRANSLATION protein_coding start - 5 235.0 7.0 5.83 0.0 288.6 0.0 -4,-5 0.0008 6 -2.0 MINOR ENSMUSG00000026103 Gls ENSMUST00000123324 - NO_TRANSLATION retained_intron ENSMUSG00000026103 Gls ENSMUST00000114513 ENSMUSP00000110158 TRANSLATION protein_coding - CCDS35561.1 5 674.0 10.0 13.88 2.8 451.8 0.0 -2,1 1.0 24 19.0 PRINCIPAL:1 ENSMUSG00000026103 Gls ENSMUST00000126221 - NO_TRANSLATION retained_intron ENSMUSG00000026103 Gls ENSMUST00000145514 - NO_TRANSLATION retained_intron ENSMUSG00000026103 Gls ENSMUST00000129107 ENSMUSP00000121408 TRANSLATION protein_coding start/stop - 5 123.0 2.0 2.485 0.0 82.9 0.0 -3,-5 0.0 2 -2.0 MINOR ENSMUSG00000026103 Gls ENSMUST00000136654 - NO_TRANSLATION retained_intron ENSMUSG00000026103 Gls ENSMUST00000147825 - NO_TRANSLATION retained_intron ENSMUSG00000026103 Gls ENSMUST00000114510 ENSMUSP00000110155 TRANSLATION protein_coding - CCDS48256.1 1 603.0 10.0 11.15 1.9 405.8 0.0 -2,1 0.2238 20 10.28 MINOR ENSMUSG00000026103 Gls ENSMUST00000142976 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026103 Gls ENSMUST00000148917 - NO_TRANSLATION retained_intron ENSMUSG00000026103 Gls ENSMUST00000114512 ENSMUSP00000110157 TRANSLATION protein_coding - - 5 491.0 10.0 12.38 0.0 451.8 0.0 -4,-5 0.0185 19 15.0 MINOR ENSMUSG00000026103 Gls ENSMUST00000156887 ENSMUSP00000116901 TRANSLATION protein_coding start - 5 205.0 2.0 5.215 0.0 128.9 0.0 -3,-4 0.0 8 -2.0 MINOR ENSMUSG00000026103 Gls ENSMUST00000138906 - NO_TRANSLATION retained_intron ENSMUSG00000026103 Gls ENSMUST00000151694 - NO_TRANSLATION retained_intron ENSMUSG00000026103 Gls ENSMUST00000139273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039239 Tgfb2 ENSMUST00000045288 ENSMUSP00000043849 TRANSLATION protein_coding - CCDS15601.1 1 414.0 0.0 3.314 0.0 210.3 0.0 4,-1 0.3125 6 12.0 MINOR ENSMUSG00000039239 Tgfb2 ENSMUST00000193640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039239 Tgfb2 ENSMUST00000191766 - NO_TRANSLATION retained_intron ENSMUSG00000039239 Tgfb2 ENSMUST00000194960 - NO_TRANSLATION retained_intron ENSMUSG00000039239 Tgfb2 ENSMUST00000194593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039239 Tgfb2 ENSMUST00000195201 ENSMUSP00000142149 TRANSLATION protein_coding - CCDS83659.1 1 442.0 0.0 2.939 11.0 202.3 0.0 4,-1 1.0 6 13.77 PRINCIPAL:1 ENSMUSG00000026387 Sctr ENSMUST00000189037 ENSMUSP00000139932 TRANSLATION protein_coding - CCDS78668.1 1 447.0 0.0 10.2 0.1 374.3 6.0 3,-2 0.4258 - 7.598 ALTERNATIVE:2 ENSMUSG00000026387 Sctr ENSMUST00000072886 ENSMUSP00000072660 TRANSLATION protein_coding - CCDS48341.1 2 464.0 0.0 10.4 0.1 374.4 6.0 3,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000102030 Gm29106 ENSMUST00000186264 ENSMUSP00000141137 TRANSLATION protein_coding - - 5 697.0 87.0 1.0 0.0 610.2 0.0 -4,-6 0.8742 - 18.0 PRINCIPAL:1 ENSMUSG00000036907 C1ql2 ENSMUST00000037286 ENSMUSP00000037257 TRANSLATION protein_coding - CCDS15233.1 1 287.0 0.0 1.6 7.1 127.0 0.0 1,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000092083 Kcnb2 ENSMUST00000170146 ENSMUSP00000126656 TRANSLATION protein_coding - CCDS48222.1 1 907.0 0.0 1.0 11.8 763.1 3.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000092083 Kcnb2 ENSMUST00000175681 ENSMUSP00000135382 TRANSLATION protein_coding - CCDS48222.1 5 907.0 0.0 1.0 11.8 763.1 3.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000026155 Smap1 ENSMUST00000027339 ENSMUSP00000027339 TRANSLATION protein_coding - CCDS14851.1 1 440.0 4.0 4.25 11.4 142.2 0.0 -4,-7 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000026155 Smap1 ENSMUST00000129254 ENSMUSP00000117875 TRANSLATION protein_coding - CCDS69870.1 1 355.0 0.0 2.25 0.8 0.0 0.0 -4,-5 0.0516 5 1.998 MINOR ENSMUSG00000026155 Smap1 ENSMUST00000141330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026155 Smap1 ENSMUST00000149737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026155 Smap1 ENSMUST00000133398 - NO_TRANSLATION retained_intron ENSMUSG00000026155 Smap1 ENSMUST00000136506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026155 Smap1 ENSMUST00000148710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026189 Pecr ENSMUST00000129458 ENSMUSP00000121931 TRANSLATION nonsense_mediated_decay - - 5 44.0 5.0 1.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026189 Pecr ENSMUST00000027381 ENSMUSP00000027381 TRANSLATION protein_coding - CCDS35607.1 1 303.0 27.0 7.58 9.5 154.3 0.0 -4,-7 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000026189 Pecr ENSMUST00000097698 ENSMUSP00000095304 TRANSLATION protein_coding - - 1 260.0 27.0 6.0175 0.0 154.3 0.0 -4,-7 0.018 9 14.874 MINOR ENSMUSG00000026189 Pecr ENSMUST00000134840 ENSMUSP00000120890 TRANSLATION nonsense_mediated_decay - - 1 90.0 11.0 2.0 0.0 44.8 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000026725 Tnn ENSMUST00000131919 ENSMUSP00000115685 TRANSLATION protein_coding - - 5 1296.0 7.0 16.5 3.9 697.6 0.0 3,-2 0.4361 18 7.0 MINOR ENSMUSG00000026725 Tnn ENSMUST00000039178 ENSMUSP00000039452 TRANSLATION protein_coding - CCDS15404.1 1 1560.0 7.0 19.5 1.1 857.8 0.0 3,-2 1.0 19 18.034 PRINCIPAL:1 ENSMUSG00000038079 Tmem237 ENSMUST00000190014 ENSMUSP00000140134 TRANSLATION protein_coding stop - 5 230.0 0.0 0.0 0.0 107.0 0.0 -4,-7 0.0001 5 -2.0 MINOR ENSMUSG00000038079 Tmem237 ENSMUST00000094917 ENSMUSP00000092522 TRANSLATION protein_coding - CCDS14983.1 1 413.0 0.0 4.05 0.1 335.9 3.0 -4,-5 0.3455 5 12.0 MINOR ENSMUSG00000038079 Tmem237 ENSMUST00000186395 ENSMUSP00000140461 TRANSLATION protein_coding stop - 3 168.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038079 Tmem237 ENSMUST00000186794 ENSMUSP00000139823 TRANSLATION protein_coding - - 1 427.0 0.0 4.05 0.0 335.9 3.0 -4,-5 0.0643 4 12.0 MINOR ENSMUSG00000038079 Tmem237 ENSMUST00000186820 - NO_TRANSLATION retained_intron ENSMUSG00000038079 Tmem237 ENSMUST00000087475 ENSMUSP00000084745 TRANSLATION protein_coding - CCDS14984.1 1 403.0 0.0 4.05 5.2 335.9 3.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000038079 Tmem237 ENSMUST00000185951 - NO_TRANSLATION retained_intron ENSMUSG00000025956 Mettl21a ENSMUST00000114079 ENSMUSP00000109713 TRANSLATION protein_coding - CCDS15006.1 1 218.0 19.0 3.0 26.2 174.6 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000025956 Mettl21a ENSMUST00000162806 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025956 Mettl21a ENSMUST00000053469 ENSMUSP00000050424 TRANSLATION protein_coding - CCDS15006.1 1 218.0 19.0 3.0 26.2 174.6 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000025956 Mettl21a ENSMUST00000161264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026198 Abcb6 ENSMUST00000159219 - NO_TRANSLATION retained_intron ENSMUSG00000026198 Abcb6 ENSMUST00000161215 ENSMUSP00000124630 TRANSLATION protein_coding start - 5 97.0 1.0 3.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026198 Abcb6 ENSMUST00000027396 ENSMUSP00000027396 TRANSLATION protein_coding - CCDS15065.1 1 842.0 12.0 14.2 10.9 489.3 0.0 -4,-6 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000026198 Abcb6 ENSMUST00000160081 - NO_TRANSLATION retained_intron ENSMUSG00000026198 Abcb6 ENSMUST00000161103 - NO_TRANSLATION retained_intron ENSMUSG00000026198 Abcb6 ENSMUST00000160757 - NO_TRANSLATION retained_intron ENSMUSG00000091844 Ccdc168 ENSMUST00000238662 ENSMUSP00000158837 TRANSLATION protein_coding - - - 6590.0 0.0 0.0 0.0 448.6 0.0 -4,-5 0.939 - 6.0 PRINCIPAL:1 ENSMUSG00000091844 Ccdc168 ENSMUST00000168641 ENSMUSP00000127017 TRANSLATION protein_coding start - - 1994.0 0.0 0.0 0.0 409.9 0.0 -4,-5 0.1035 - -2.0 MINOR ENSMUSG00000047067 Dusp28 ENSMUST00000060913 ENSMUSP00000057690 TRANSLATION protein_coding - CCDS15179.1 1 163.0 8.0 2.0 0.4 96.8 0.0 -4,-7 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000038370 Pcp4l1 ENSMUST00000111332 ENSMUSP00000106964 TRANSLATION protein_coding - CCDS48441.1 1 68.0 0.0 1.0 19.8 0.0 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000033740 St18 ENSMUST00000131467 ENSMUSP00000120134 TRANSLATION protein_coding stop - 3 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033740 St18 ENSMUST00000151281 ENSMUSP00000122055 TRANSLATION protein_coding - CCDS14810.1 1 1045.0 24.0 9.8 4.5 551.0 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000033740 St18 ENSMUST00000130338 ENSMUSP00000141266 TRANSLATION protein_coding start - 3 95.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033740 St18 ENSMUST00000139756 ENSMUSP00000142063 TRANSLATION protein_coding stop - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033740 St18 ENSMUST00000151015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033740 St18 ENSMUST00000142304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033740 St18 ENSMUST00000132207 ENSMUSP00000142317 TRANSLATION nonsense_mediated_decay start - 3 108.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033740 St18 ENSMUST00000140079 ENSMUSP00000118322 TRANSLATION protein_coding - CCDS14810.1 1 1045.0 24.0 9.8 4.5 551.0 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000033740 St18 ENSMUST00000150761 ENSMUSP00000120298 TRANSLATION protein_coding - CCDS14810.1 1 1045.0 24.0 9.8 4.5 551.0 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000033740 St18 ENSMUST00000139838 ENSMUSP00000118129 TRANSLATION protein_coding stop - 3 215.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000033740 St18 ENSMUST00000163727 ENSMUSP00000131417 TRANSLATION protein_coding - CCDS14810.1 5 1045.0 24.0 9.8 4.5 551.0 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000033740 St18 ENSMUST00000043578 ENSMUSP00000042056 TRANSLATION protein_coding - CCDS14810.1 1 1045.0 24.0 9.8 4.5 551.0 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000033740 St18 ENSMUST00000131494 ENSMUSP00000117789 TRANSLATION protein_coding - CCDS14810.1 1 1045.0 24.0 9.8 4.5 551.0 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000026634 Angel2 ENSMUST00000137608 - NO_TRANSLATION retained_intron ENSMUSG00000026634 Angel2 ENSMUST00000123384 ENSMUSP00000117912 TRANSLATION nonsense_mediated_decay - - 1 212.0 0.0 2.75 0.0 76.6 0.0 -4,-6 0.0017 6 -2.0 MINOR ENSMUSG00000026634 Angel2 ENSMUST00000110899 ENSMUSP00000106524 TRANSLATION protein_coding - CCDS56667.1 5 522.0 0.0 3.36 11.6 89.4 0.0 -4,-5 1.0 11 9.0 PRINCIPAL:4 ENSMUSG00000026634 Angel2 ENSMUST00000134187 - NO_TRANSLATION retained_intron ENSMUSG00000026634 Angel2 ENSMUST00000130298 ENSMUSP00000142318 TRANSLATION nonsense_mediated_decay - - 5 116.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026634 Angel2 ENSMUST00000146048 - NO_TRANSLATION retained_intron ENSMUSG00000026634 Angel2 ENSMUST00000135364 ENSMUSP00000115804 TRANSLATION protein_coding stop - 2 192.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026634 Angel2 ENSMUST00000066632 ENSMUSP00000064556 TRANSLATION protein_coding - CCDS15612.1 1 544.0 0.0 3.36 9.3 89.4 0.0 -4,-2 0.9327 11 8.349 ALTERNATIVE:1 ENSMUSG00000026634 Angel2 ENSMUST00000144693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026634 Angel2 ENSMUST00000027947 ENSMUSP00000027947 TRANSLATION protein_coding - CCDS56667.1 1 522.0 0.0 3.36 11.6 89.4 0.0 -4,-5 1.0 11 9.0 PRINCIPAL:4 ENSMUSG00000118272 Gm55978 ENSMUST00000211073 ENSMUSP00000148067 TRANSLATION protein_coding - - - 56.0 0.0 0.8 1.0 0.0 0.0 -4,0 0.6981 1 6.0 PRINCIPAL:1 ENSMUSG00000048000 Gigyf2 ENSMUST00000174334 ENSMUSP00000133666 TRANSLATION protein_coding stop - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000048000 Gigyf2 ENSMUST00000187038 - NO_TRANSLATION retained_intron ENSMUSG00000048000 Gigyf2 ENSMUST00000172736 ENSMUSP00000134620 TRANSLATION protein_coding start/stop - 3 222.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000048000 Gigyf2 ENSMUST00000174671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048000 Gigyf2 ENSMUST00000172776 - NO_TRANSLATION retained_intron ENSMUSG00000048000 Gigyf2 ENSMUST00000173235 ENSMUSP00000134677 TRANSLATION nonsense_mediated_decay start - 5 787.0 0.0 0.72 0.0 73.9 0.0 -4,-6 0.0695 5 -2.0 MINOR ENSMUSG00000048000 Gigyf2 ENSMUST00000174846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048000 Gigyf2 ENSMUST00000174605 - NO_TRANSLATION retained_intron ENSMUSG00000048000 Gigyf2 ENSMUST00000174583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048000 Gigyf2 ENSMUST00000164992 ENSMUSP00000129046 TRANSLATION protein_coding stop - 1 721.0 0.0 3.52 0.0 73.9 0.0 -4,-5 0.0584 8 -2.0 MINOR ENSMUSG00000048000 Gigyf2 ENSMUST00000172964 ENSMUSP00000133392 TRANSLATION nonsense_mediated_decay - - 5 1122.0 0.0 3.52 2.1 73.9 0.0 -4,-5 0.6469 13 -2.0 MINOR ENSMUSG00000048000 Gigyf2 ENSMUST00000173663 ENSMUSP00000133416 TRANSLATION protein_coding stop - 3 110.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048000 Gigyf2 ENSMUST00000173850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048000 Gigyf2 ENSMUST00000173152 ENSMUSP00000134086 TRANSLATION protein_coding stop - 5 172.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048000 Gigyf2 ENSMUST00000174535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048000 Gigyf2 ENSMUST00000174482 - NO_TRANSLATION retained_intron ENSMUSG00000048000 Gigyf2 ENSMUST00000027475 ENSMUSP00000027475 TRANSLATION protein_coding - CCDS15133.1 1 1291.0 0.0 3.52 1.4 73.9 0.0 -4,-5 1.0 15 8.364 PRINCIPAL:4 ENSMUSG00000048000 Gigyf2 ENSMUST00000174501 ENSMUSP00000133327 TRANSLATION protein_coding - CCDS15133.1 5 1291.0 0.0 3.52 1.4 73.9 0.0 -4,-5 1.0 15 8.364 PRINCIPAL:4 ENSMUSG00000048000 Gigyf2 ENSMUST00000173636 ENSMUSP00000134660 TRANSLATION protein_coding start/stop - 5 258.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000048000 Gigyf2 ENSMUST00000173148 ENSMUSP00000134553 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048000 Gigyf2 ENSMUST00000172794 ENSMUSP00000134077 TRANSLATION protein_coding - CCDS56636.1 5 1285.0 0.0 3.52 1.1 73.9 0.0 -4,-5 0.8084 15 8.091 ALTERNATIVE:2 ENSMUSG00000048000 Gigyf2 ENSMUST00000173173 ENSMUSP00000134193 TRANSLATION protein_coding stop - 1 877.0 0.0 3.52 0.0 73.9 0.0 -4,-5 0.1036 9 -2.0 MINOR ENSMUSG00000048000 Gigyf2 ENSMUST00000172976 - NO_TRANSLATION retained_intron ENSMUSG00000016481 Cr1l ENSMUST00000193829 ENSMUSP00000141996 TRANSLATION nonsense_mediated_decay - - 5 90.0 0.0 0.0 0.0 0.0 1.0 -3,-7 0.0 - -2.0 MINOR ENSMUSG00000016481 Cr1l ENSMUST00000195586 - NO_TRANSLATION retained_intron ENSMUSG00000016481 Cr1l ENSMUST00000075451 ENSMUSP00000074902 TRANSLATION protein_coding - CCDS15641.1 1 440.0 0.0 7.63 0.0 183.3 2.0 -2,-6 0.5003 7 8.0 ALTERNATIVE:2 ENSMUSG00000016481 Cr1l ENSMUST00000193094 ENSMUSP00000142309 TRANSLATION protein_coding - - 1 429.0 0.0 7.63 0.0 183.3 2.0 -2,-6 0.7724 7 8.0 PRINCIPAL:2 ENSMUSG00000016481 Cr1l ENSMUST00000193719 - NO_TRANSLATION retained_intron ENSMUSG00000016481 Cr1l ENSMUST00000192405 - NO_TRANSLATION retained_intron ENSMUSG00000016481 Cr1l ENSMUST00000194732 - NO_TRANSLATION retained_intron ENSMUSG00000016481 Cr1l ENSMUST00000194062 ENSMUSP00000142104 TRANSLATION protein_coding start - 3 164.0 0.0 3.38 0.0 75.6 1.0 -4,-5 0.003 2 -2.0 MINOR ENSMUSG00000016481 Cr1l ENSMUST00000194111 ENSMUSP00000142069 TRANSLATION protein_coding - - 1 356.0 0.0 7.63 0.0 183.3 1.0 -4,-5 0.0667 6 8.0 ALTERNATIVE:2 ENSMUSG00000016481 Cr1l ENSMUST00000191775 ENSMUSP00000141250 TRANSLATION protein_coding stop - 5 255.0 0.0 5.25 0.0 136.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000016194 Hsd11b1 ENSMUST00000191977 - NO_TRANSLATION retained_intron ENSMUSG00000016194 Hsd11b1 ENSMUST00000161737 ENSMUSP00000125620 TRANSLATION protein_coding - CCDS15635.1 1 292.0 29.0 5.73 10.3 168.5 0.0 -2,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000016194 Hsd11b1 ENSMUST00000161406 ENSMUSP00000124142 TRANSLATION protein_coding start - 3 80.0 9.0 1.0 0.0 38.6 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000016194 Hsd11b1 ENSMUST00000016338 ENSMUSP00000016338 TRANSLATION protein_coding - CCDS15635.1 1 292.0 29.0 5.73 10.3 168.5 0.0 -2,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000016194 Hsd11b1 ENSMUST00000160929 ENSMUSP00000123849 TRANSLATION protein_coding - - 1 262.0 29.0 5.33 1.1 168.5 0.0 -4,-7 0.1226 12 17.235 MINOR ENSMUSG00000016194 Hsd11b1 ENSMUST00000159644 ENSMUSP00000124693 TRANSLATION protein_coding stop - 5 214.0 22.0 4.4 0.0 161.3 0.0 -2,-5 0.0037 6 -2.0 MINOR ENSMUSG00000016194 Hsd11b1 ENSMUST00000162842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062580 Timm17a ENSMUST00000081104 ENSMUSP00000079883 TRANSLATION protein_coding - CCDS15318.1 1 171.0 0.0 4.58 36.9 101.2 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000062580 Timm17a ENSMUST00000125454 ENSMUSP00000119770 TRANSLATION protein_coding stop - 3 70.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000062580 Timm17a ENSMUST00000134088 ENSMUSP00000119555 TRANSLATION protein_coding stop - 3 97.0 0.0 3.0 0.0 92.7 0.0 -4,-2 0.0003 2 -2.0 MINOR ENSMUSG00000062580 Timm17a ENSMUST00000152706 - NO_TRANSLATION retained_intron ENSMUSG00000026469 Xpr1 ENSMUST00000111775 ENSMUSP00000107405 TRANSLATION protein_coding - - 5 630.0 0.0 3.3 1.7 361.4 7.0 -4,-5 0.1278 9 7.272 MINOR ENSMUSG00000026469 Xpr1 ENSMUST00000129271 - NO_TRANSLATION retained_intron ENSMUSG00000026469 Xpr1 ENSMUST00000111774 ENSMUSP00000107404 TRANSLATION protein_coding - - 1 679.0 0.0 3.3 0.0 442.0 8.0 -4,-5 0.1152 9 12.0 MINOR ENSMUSG00000026469 Xpr1 ENSMUST00000027741 ENSMUSP00000027741 TRANSLATION protein_coding - CCDS15384.1 1 695.0 0.0 3.3 26.7 442.0 8.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000026469 Xpr1 ENSMUST00000192359 - NO_TRANSLATION retained_intron ENSMUSG00000026469 Xpr1 ENSMUST00000143529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026469 Xpr1 ENSMUST00000139925 - NO_TRANSLATION retained_intron ENSMUSG00000037408 Cnnm4 ENSMUST00000153128 ENSMUSP00000121317 TRANSLATION protein_coding - CCDS14879.2 1 771.0 14.0 4.1 0.4 139.8 0.0 2,-2 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000037408 Cnnm4 ENSMUST00000192530 - NO_TRANSLATION retained_intron ENSMUSG00000026395 Ptprc ENSMUST00000186628 - NO_TRANSLATION retained_intron ENSMUSG00000026395 Ptprc ENSMUST00000185570 - NO_TRANSLATION retained_intron ENSMUSG00000026395 Ptprc ENSMUST00000183229 - NO_TRANSLATION retained_intron ENSMUSG00000026395 Ptprc ENSMUST00000182755 ENSMUSP00000138275 TRANSLATION protein_coding - CCDS59542.1 1 1130.0 11.0 16.30675 0.0 646.5 2.0 4,-1 0.6573 31 14.0 ALTERNATIVE:2 ENSMUSG00000026395 Ptprc ENSMUST00000183262 - NO_TRANSLATION retained_intron ENSMUSG00000026395 Ptprc ENSMUST00000195533 ENSMUSP00000142052 TRANSLATION protein_coding stop - 5 212.0 0.0 1.588 0.0 118.1 0.0 2,-1 0.0 3 -2.0 MINOR ENSMUSG00000026395 Ptprc ENSMUST00000193650 ENSMUSP00000141524 TRANSLATION protein_coding stop - 5 94.0 0.0 0.0 0.0 52.5 0.0 2,-1 0.0 - -2.0 MINOR ENSMUSG00000026395 Ptprc ENSMUST00000187586 - NO_TRANSLATION retained_intron ENSMUSG00000026395 Ptprc ENSMUST00000188596 - NO_TRANSLATION retained_intron ENSMUSG00000026395 Ptprc ENSMUST00000183301 ENSMUSP00000138350 TRANSLATION protein_coding - CCDS48383.2 5 1293.0 11.0 16.30675 0.0 646.5 2.0 2,-1 0.6127 31 14.0 ALTERNATIVE:2 ENSMUSG00000026395 Ptprc ENSMUST00000182283 ENSMUSP00000138800 TRANSLATION protein_coding - CCDS15330.2 1 1154.0 11.0 16.30675 0.0 646.5 2.0 2,-1 1.0 31 14.0 PRINCIPAL:2 ENSMUSG00000026395 Ptprc ENSMUST00000182138 - NO_TRANSLATION retained_intron ENSMUSG00000026395 Ptprc ENSMUST00000112036 - NO_TRANSLATION retained_intron ENSMUSG00000026358 Rgs1 ENSMUST00000189061 ENSMUSP00000140624 TRANSLATION protein_coding - CCDS15349.2 1 209.0 0.0 3.08 12.5 129.3 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026358 Rgs1 ENSMUST00000169409 ENSMUSP00000126270 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026358 Rgs1 ENSMUST00000167317 ENSMUSP00000139778 TRANSLATION nonsense_mediated_decay - - 1 46.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026358 Rgs1 ENSMUST00000172388 ENSMUSP00000130339 TRANSLATION nonsense_mediated_decay - - 1 110.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000026358 Rgs1 ENSMUST00000170870 - NO_TRANSLATION retained_intron ENSMUSG00000026358 Rgs1 ENSMUST00000185714 ENSMUSP00000140902 TRANSLATION protein_coding stop - 5 129.0 0.0 2.08 0.0 75.1 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000026358 Rgs1 ENSMUST00000167812 ENSMUSP00000140300 TRANSLATION nonsense_mediated_decay start - 1 43.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026358 Rgs1 ENSMUST00000169042 - NO_TRANSLATION retained_intron ENSMUSG00000026358 Rgs1 ENSMUST00000189916 - NO_TRANSLATION retained_intron ENSMUSG00000091060 Myocos ENSMUST00000193257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091060 Myocos ENSMUST00000193898 ENSMUSP00000141822 TRANSLATION protein_coding - - 3 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.015 - 0.0 ALTERNATIVE:2 ENSMUSG00000091060 Myocos ENSMUST00000169439 ENSMUSP00000127102 TRANSLATION protein_coding - CCDS48418.1 1 143.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.8458 - 0.0 PRINCIPAL:2 ENSMUSG00000026686 Lmx1a ENSMUST00000111377 ENSMUSP00000107008 TRANSLATION protein_coding - CCDS15460.1 5 382.0 15.0 3.14 20.7 174.5 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000026686 Lmx1a ENSMUST00000028003 ENSMUSP00000028003 TRANSLATION protein_coding - CCDS15460.1 1 382.0 15.0 3.14 20.7 174.5 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000084989 Crocc2 ENSMUST00000138595 ENSMUSP00000120588 TRANSLATION protein_coding - CCDS78654.1 5 1638.0 0.0 10.72 0.1 59.2 0.0 -4,-5 1.0 32 12.0 PRINCIPAL:1 ENSMUSG00000026125 Prss39 ENSMUST00000191604 ENSMUSP00000140460 TRANSLATION nonsense_mediated_decay - - 3 114.0 3.0 0.8 0.0 47.8 0.0 1,-1 0.0051 1 -2.0 MINOR ENSMUSG00000026125 Prss39 ENSMUST00000027299 ENSMUSP00000027299 TRANSLATION protein_coding - CCDS14868.1 1 367.0 2.0 2.3 0.4 173.8 0.0 1,-1 1.0 4 14.001 PRINCIPAL:1 ENSMUSG00000038349 Plcl1 ENSMUST00000187059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038349 Plcl1 ENSMUST00000042986 ENSMUSP00000037854 TRANSLATION protein_coding - CCDS48263.1 1 1096.0 11.0 0.4 9.2 490.7 0.0 -4,-5 1.0 23 21.0 PRINCIPAL:1 ENSMUSG00000049353 Rd3 ENSMUST00000180463 ENSMUSP00000138049 TRANSLATION protein_coding - CCDS15626.3 1 195.0 0.0 3.35 20.6 152.5 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000049353 Rd3 ENSMUST00000192547 - NO_TRANSLATION retained_intron ENSMUSG00000049353 Rd3 ENSMUST00000175680 ENSMUSP00000135650 TRANSLATION protein_coding - CCDS78776.1 1 105.0 0.0 1.0 0.0 68.9 0.0 -4,-7 0.0125 - 2.286 MINOR ENSMUSG00000049353 Rd3 ENSMUST00000181512 ENSMUSP00000137756 TRANSLATION protein_coding - CCDS78776.1 5 105.0 0.0 1.0 0.0 68.9 0.0 -4,-7 0.0125 - 2.286 MINOR ENSMUSG00000042901 Aida ENSMUST00000191782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042901 Aida ENSMUST00000109166 ENSMUSP00000104795 TRANSLATION protein_coding - CCDS56663.1 1 305.0 0.0 7.75 27.4 354.7 0.0 -4,-2 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000042901 Aida ENSMUST00000193359 - NO_TRANSLATION retained_intron ENSMUSG00000042901 Aida ENSMUST00000193959 ENSMUSP00000142129 TRANSLATION nonsense_mediated_decay start - 5 21.0 0.0 0.75 0.0 34.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042901 Aida ENSMUST00000194652 - NO_TRANSLATION retained_intron ENSMUSG00000042901 Aida ENSMUST00000195268 - NO_TRANSLATION retained_intron ENSMUSG00000042901 Aida ENSMUST00000193625 ENSMUSP00000141649 TRANSLATION protein_coding - - 3 223.0 0.0 5.75 0.0 249.4 0.0 -4,-2 0.0 7 1.998 MINOR ENSMUSG00000042901 Aida ENSMUST00000192293 - NO_TRANSLATION retained_intron ENSMUSG00000042901 Aida ENSMUST00000192252 - NO_TRANSLATION retained_intron ENSMUSG00000042268 Slc26a9 ENSMUST00000147800 ENSMUSP00000122075 TRANSLATION protein_coding stop - 3 179.0 0.0 2.5 0.0 74.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042268 Slc26a9 ENSMUST00000049027 ENSMUSP00000036916 TRANSLATION protein_coding - CCDS15273.1 1 790.0 0.0 13.68 10.0 401.3 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042268 Slc26a9 ENSMUST00000130544 - NO_TRANSLATION retained_intron ENSMUSG00000042268 Slc26a9 ENSMUST00000186122 ENSMUSP00000141171 TRANSLATION nonsense_mediated_decay - - 5 478.0 0.0 8.0 0.0 253.2 8.0 -4,-7 0.0021 - -2.0 MINOR ENSMUSG00000048411 Gm597 ENSMUST00000059937 ENSMUSP00000058140 TRANSLATION protein_coding - CCDS48232.1 1 896.0 0.0 1.0 0.0 43.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026675 Hsd17b7 ENSMUST00000111353 ENSMUSP00000106985 TRANSLATION protein_coding - - 1 362.0 30.0 7.0 0.0 91.9 0.0 -2,-5 0.021 9 16.002 MINOR ENSMUSG00000026675 Hsd17b7 ENSMUST00000123230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026675 Hsd17b7 ENSMUST00000027989 ENSMUSP00000027989 TRANSLATION protein_coding - CCDS35766.1 1 334.0 30.0 8.0 11.0 91.9 0.0 -2,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000026675 Hsd17b7 ENSMUST00000133563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042111 Ccdc115 ENSMUST00000188583 - NO_TRANSLATION retained_intron ENSMUSG00000042111 Ccdc115 ENSMUST00000042493 ENSMUSP00000042918 TRANSLATION protein_coding - CCDS14866.1 1 180.0 0.0 0.0 4.8 0.0 0.0 -4,-5 0.9216 4 2.0 PRINCIPAL:1 ENSMUSG00000005674 Tomm40l ENSMUST00000147246 ENSMUSP00000119006 TRANSLATION protein_coding stop - 5 95.0 0.0 2.55 0.0 45.5 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000005674 Tomm40l ENSMUST00000130529 - NO_TRANSLATION retained_intron ENSMUSG00000005674 Tomm40l ENSMUST00000111327 ENSMUSP00000106959 TRANSLATION protein_coding - CCDS15481.1 1 308.0 0.0 8.46 18.5 219.2 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000005674 Tomm40l ENSMUST00000154106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005674 Tomm40l ENSMUST00000005817 ENSMUSP00000005817 TRANSLATION protein_coding - CCDS15481.1 1 308.0 0.0 8.46 18.5 219.2 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000005674 Tomm40l ENSMUST00000138184 ENSMUSP00000115877 TRANSLATION protein_coding stop - 5 118.0 0.0 3.3 0.0 55.4 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000005674 Tomm40l ENSMUST00000143405 ENSMUSP00000137963 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.8 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000005674 Tomm40l ENSMUST00000111326 ENSMUSP00000106958 TRANSLATION protein_coding - - 5 274.0 0.0 7.38 1.0 187.5 0.0 -4,-2 0.0156 4 7.938 MINOR ENSMUSG00000026094 Stk17b ENSMUST00000027263 ENSMUSP00000027263 TRANSLATION protein_coding - CCDS14955.1 1 372.0 18.0 6.3 20.5 236.5 0.0 -4,-2 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000026094 Stk17b ENSMUST00000187066 - NO_TRANSLATION retained_intron ENSMUSG00000026094 Stk17b ENSMUST00000185920 ENSMUSP00000139880 TRANSLATION protein_coding stop - 5 95.0 4.0 2.5 0.0 109.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026638 Irf6 ENSMUST00000193772 - NO_TRANSLATION retained_intron ENSMUSG00000026638 Irf6 ENSMUST00000140066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026638 Irf6 ENSMUST00000076521 ENSMUSP00000075839 TRANSLATION protein_coding - CCDS15632.1 1 467.0 0.0 4.0 15.6 358.1 0.0 -4,-1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000026638 Irf6 ENSMUST00000138826 - NO_TRANSLATION retained_intron ENSMUSG00000013973 Dedd ENSMUST00000131653 - NO_TRANSLATION retained_intron ENSMUSG00000013973 Dedd ENSMUST00000064950 ENSMUSP00000068419 TRANSLATION protein_coding - CCDS15490.1 1 318.0 0.0 0.0 0.0 62.5 0.0 -4,-7 0.9652 2 5.88 PRINCIPAL:1 ENSMUSG00000013973 Dedd ENSMUST00000111299 ENSMUSP00000106930 TRANSLATION protein_coding - CCDS15490.1 1 318.0 0.0 0.0 0.0 62.5 0.0 -4,-7 0.9652 2 5.88 PRINCIPAL:1 ENSMUSG00000013973 Dedd ENSMUST00000127830 ENSMUSP00000122628 TRANSLATION protein_coding stop - 2 155.0 0.0 0.0 0.0 63.8 0.0 -4,-7 0.0472 1 -2.0 MINOR ENSMUSG00000013973 Dedd ENSMUST00000135150 ENSMUSP00000120993 TRANSLATION protein_coding stop - 5 31.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000013973 Dedd ENSMUST00000129116 ENSMUSP00000120278 TRANSLATION protein_coding stop - 3 234.0 0.0 0.0 0.0 62.5 0.0 -4,-7 0.0535 2 -2.0 MINOR ENSMUSG00000013973 Dedd ENSMUST00000097467 ENSMUSP00000095075 TRANSLATION protein_coding - CCDS15490.1 1 318.0 0.0 0.0 0.0 62.5 0.0 -4,-7 0.9652 2 5.88 PRINCIPAL:1 ENSMUSG00000013973 Dedd ENSMUST00000142063 ENSMUSP00000120861 TRANSLATION protein_coding stop - 2 178.0 0.0 0.0 0.0 63.8 0.0 -4,-7 0.0467 1 -2.0 MINOR ENSMUSG00000013973 Dedd ENSMUST00000157015 ENSMUSP00000119948 TRANSLATION protein_coding stop - 2 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000013973 Dedd ENSMUST00000111300 ENSMUSP00000106931 TRANSLATION protein_coding - CCDS15490.1 1 318.0 0.0 0.0 0.0 62.5 0.0 -4,-7 0.9652 2 5.88 PRINCIPAL:1 ENSMUSG00000026623 Lpgat1 ENSMUST00000138494 - NO_TRANSLATION retained_intron ENSMUSG00000026623 Lpgat1 ENSMUST00000133076 ENSMUSP00000115255 TRANSLATION protein_coding stop - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000026623 Lpgat1 ENSMUST00000130876 ENSMUSP00000114382 TRANSLATION protein_coding stop - 5 221.0 2.0 1.96 0.0 33.8 3.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000026623 Lpgat1 ENSMUST00000110855 ENSMUSP00000106479 TRANSLATION protein_coding - CCDS15622.1 1 370.0 2.0 2.885 32.9 91.3 5.0 -4,-6 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000026623 Lpgat1 ENSMUST00000110856 ENSMUSP00000106480 TRANSLATION protein_coding - CCDS48488.1 1 409.0 2.0 2.885 2.4 91.3 5.0 -4,-2 0.4174 11 14.176 MINOR ENSMUSG00000016526 Dyrk3 ENSMUST00000016670 ENSMUSP00000016670 TRANSLATION protein_coding - CCDS15267.1 1 586.0 19.0 1.8 12.5 199.0 0.0 -4,-6 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000016526 Dyrk3 ENSMUST00000189756 ENSMUSP00000140050 TRANSLATION protein_coding stop - 3 151.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045091 Aqp12 ENSMUST00000059676 ENSMUSP00000060622 TRANSLATION protein_coding - CCDS15183.1 1 290.0 0.0 2.8 0.1 34.2 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026078 Pdcl3 ENSMUST00000194552 ENSMUSP00000142151 TRANSLATION protein_coding stop - 5 97.0 0.0 2.23 0.0 42.9 0.0 -4,-5 0.0008 2 -2.0 MINOR ENSMUSG00000026078 Pdcl3 ENSMUST00000193073 - NO_TRANSLATION retained_intron ENSMUSG00000026078 Pdcl3 ENSMUST00000193489 ENSMUSP00000141258 TRANSLATION nonsense_mediated_decay - - 5 88.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000026078 Pdcl3 ENSMUST00000027247 ENSMUSP00000027247 TRANSLATION protein_coding - CCDS14903.1 1 240.0 0.0 4.23 33.8 63.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000118607 Gm7592 ENSMUST00000113407 ENSMUSP00000159221 TRANSLATION protein_coding - - 2 296.0 0.0 1.0 0.1 0.0 0.0 -4,-7 0.6725 - 6.0 PRINCIPAL:1 ENSMUSG00000059498 Fcgr3 ENSMUST00000164044 ENSMUSP00000131938 TRANSLATION protein_coding - CCDS15477.2 1 267.0 0.0 3.264 1.6 80.1 1.0 -1,-5 1.0 2 9.0 PRINCIPAL:4 ENSMUSG00000059498 Fcgr3 ENSMUST00000164179 ENSMUSP00000133039 TRANSLATION protein_coding stop - 3 74.0 0.0 1.264 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000059498 Fcgr3 ENSMUST00000169017 ENSMUSP00000131836 TRANSLATION protein_coding - - 1 266.0 0.0 3.264 1.6 80.1 1.0 -3,-6 0.8078 2 9.0 ALTERNATIVE:2 ENSMUSG00000059498 Fcgr3 ENSMUST00000168817 - NO_TRANSLATION retained_intron ENSMUSG00000067795 4930444P10Rik ENSMUST00000151004 ENSMUSP00000119257 TRANSLATION protein_coding - CCDS56622.1 3 154.0 0.0 1.0 6.7 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000067795 4930444P10Rik ENSMUST00000145070 ENSMUSP00000137853 TRANSLATION protein_coding - CCDS56622.1 2 154.0 0.0 1.0 6.7 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000067795 4930444P10Rik ENSMUST00000115367 ENSMUSP00000111024 TRANSLATION protein_coding - CCDS56622.1 5 154.0 0.0 1.0 6.7 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000020423 Btg2 ENSMUST00000020692 ENSMUSP00000020692 TRANSLATION protein_coding - CCDS15302.1 1 158.0 0.0 2.0 6.9 142.7 0.0 -3,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000114212 Gm47985 ENSMUST00000225278 ENSMUSP00000152996 TRANSLATION protein_coding - - - 300.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6028 - 0.0 PRINCIPAL:1 ENSMUSG00000044708 Kcnj10 ENSMUST00000056136 ENSMUSP00000054356 TRANSLATION protein_coding - CCDS15512.1 1 379.0 0.0 1.0 17.8 446.1 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000086056 Gm4846 ENSMUST00000143922 ENSMUSP00000123476 TRANSLATION protein_coding - CCDS48433.1 1 538.0 43.0 7.75 4.5 785.0 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000033276 Stk36 ENSMUST00000087183 ENSMUSP00000084430 TRANSLATION protein_coding - CCDS35619.1 5 1316.0 19.0 5.68 11.4 289.6 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000033276 Stk36 ENSMUST00000113694 ENSMUSP00000109324 TRANSLATION protein_coding - - 1 145.0 19.0 3.58 0.0 156.6 0.0 -4,-5 0.0 - 7.8 MINOR ENSMUSG00000033276 Stk36 ENSMUST00000145673 - NO_TRANSLATION retained_intron ENSMUSG00000033276 Stk36 ENSMUST00000157007 - NO_TRANSLATION retained_intron ENSMUSG00000033276 Stk36 ENSMUST00000148456 ENSMUSP00000120020 TRANSLATION protein_coding stop - 1 1048.0 19.0 5.68 0.0 254.5 0.0 -4,-5 0.0685 2 -2.0 MINOR ENSMUSG00000033276 Stk36 ENSMUST00000155473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033276 Stk36 ENSMUST00000189830 ENSMUSP00000140912 TRANSLATION nonsense_mediated_decay - - 3 79.0 6.0 1.23 0.0 29.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033276 Stk36 ENSMUST00000123154 - NO_TRANSLATION retained_intron ENSMUSG00000033276 Stk36 ENSMUST00000087186 ENSMUSP00000084433 TRANSLATION protein_coding - - 1 1188.0 19.0 5.68 0.0 289.6 0.0 -4,-5 0.2146 4 18.0 MINOR ENSMUSG00000089943 Ugt1a5 ENSMUST00000097659 ENSMUSP00000095263 TRANSLATION protein_coding - CCDS35659.1 1 529.0 19.0 5.0 2.0 807.5 0.0 4,-1 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000026342 Slc35f5 ENSMUST00000027580 ENSMUSP00000027580 TRANSLATION protein_coding - CCDS35694.1 1 524.0 0.0 0.0 9.6 0.0 15.0 -4,-2 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000026342 Slc35f5 ENSMUST00000189443 ENSMUSP00000140918 TRANSLATION nonsense_mediated_decay start - 3 122.0 0.0 0.0 0.0 0.0 7.0 -4,-5 0.0217 - -2.0 MINOR ENSMUSG00000026342 Slc35f5 ENSMUST00000190037 ENSMUSP00000139639 TRANSLATION protein_coding stop - 3 170.0 0.0 0.0 0.0 0.0 4.0 -4,0 0.0301 1 -2.0 MINOR ENSMUSG00000062169 Cnih4 ENSMUST00000193907 ENSMUSP00000141442 TRANSLATION protein_coding - - 2 78.0 0.0 2.08 13.9 78.3 3.0 2,-3 0.296 1 4.378 MINOR ENSMUSG00000062169 Cnih4 ENSMUST00000111059 ENSMUSP00000106688 TRANSLATION protein_coding - - 1 92.0 0.0 3.08 1.0 104.7 2.0 -2,-5 0.0083 - 6.354 MINOR ENSMUSG00000062169 Cnih4 ENSMUST00000111057 - NO_TRANSLATION retained_intron ENSMUSG00000062169 Cnih4 ENSMUST00000075968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062169 Cnih4 ENSMUST00000134115 ENSMUSP00000115772 TRANSLATION protein_coding - CCDS15582.1 1 139.0 0.0 4.08 33.0 165.5 5.0 -2,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026177 Slc11a1 ENSMUST00000136786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026177 Slc11a1 ENSMUST00000131511 - NO_TRANSLATION retained_intron ENSMUSG00000026177 Slc11a1 ENSMUST00000155865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026177 Slc11a1 ENSMUST00000135137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026177 Slc11a1 ENSMUST00000187516 ENSMUSP00000139455 TRANSLATION protein_coding - - 5 507.0 0.0 11.25 0.1 374.9 8.0 -4,-1 0.0096 - 8.97 MINOR ENSMUSG00000026177 Slc11a1 ENSMUST00000127487 - NO_TRANSLATION retained_intron ENSMUSG00000026177 Slc11a1 ENSMUST00000149166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026177 Slc11a1 ENSMUST00000134189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026177 Slc11a1 ENSMUST00000147233 - NO_TRANSLATION retained_intron ENSMUSG00000026177 Slc11a1 ENSMUST00000133896 - NO_TRANSLATION retained_intron ENSMUSG00000026177 Slc11a1 ENSMUST00000027368 ENSMUSP00000027368 TRANSLATION protein_coding - CCDS15047.1 1 548.0 0.0 12.25 4.5 392.1 9.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038147 Cd84 ENSMUST00000136479 ENSMUSP00000122951 TRANSLATION protein_coding - CCDS69979.1 1 328.0 0.0 1.8 0.4 0.0 1.0 2,-2 0.7313 7 6.0 ALTERNATIVE:2 ENSMUSG00000038147 Cd84 ENSMUST00000135386 ENSMUSP00000115674 TRANSLATION protein_coding - CCDS56657.1 1 140.0 0.0 1.0 0.0 0.0 0.0 2,-2 0.2659 2 3.336 MINOR ENSMUSG00000038147 Cd84 ENSMUST00000128189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038147 Cd84 ENSMUST00000155802 ENSMUSP00000120881 TRANSLATION protein_coding - CCDS15503.1 1 329.0 0.0 1.8 1.4 0.0 1.0 2,-2 1.0 7 7.0 PRINCIPAL:2 ENSMUSG00000015484 Fam163a ENSMUST00000015628 ENSMUSP00000015628 TRANSLATION protein_coding - CCDS15390.1 1 168.0 0.0 1.0 10.3 205.2 0.0 -1,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026179 Pnkd ENSMUST00000129219 - NO_TRANSLATION retained_intron ENSMUSG00000026179 Pnkd ENSMUST00000152492 - NO_TRANSLATION retained_intron ENSMUSG00000026179 Pnkd ENSMUST00000138620 - NO_TRANSLATION retained_intron ENSMUSG00000026179 Pnkd ENSMUST00000087226 ENSMUSP00000084478 TRANSLATION protein_coding - - 1 424.0 9.0 8.5 0.0 181.0 1.0 -4,0 0.6513 5 18.0 PRINCIPAL:1 ENSMUSG00000026179 Pnkd ENSMUST00000087225 ENSMUSP00000084477 TRANSLATION protein_coding - CCDS15045.1 1 360.0 9.0 7.5 6.7 113.3 1.0 2,-2 0.4144 5 13.758 MINOR ENSMUSG00000026179 Pnkd ENSMUST00000027370 ENSMUSP00000027370 TRANSLATION protein_coding - CCDS35613.1 1 385.0 9.0 7.5 8.0 113.3 0.0 -4,0 0.5332 6 14.175 MINOR ENSMUSG00000026179 Pnkd ENSMUST00000113805 ENSMUSP00000109436 TRANSLATION protein_coding - CCDS35614.1 1 142.0 0.0 1.0 10.4 71.4 1.0 -4,0 1.0 3 3.0 MINOR ENSMUSG00000026179 Pnkd ENSMUST00000190398 - NO_TRANSLATION retained_intron ENSMUSG00000040612 Ildr2 ENSMUST00000192426 ENSMUSP00000141961 TRANSLATION protein_coding - - 1 201.0 0.0 1.2 0.0 0.0 1.0 -2,-6 0.003 4 4.236 MINOR ENSMUSG00000040612 Ildr2 ENSMUST00000192732 ENSMUSP00000141502 TRANSLATION protein_coding - - 1 534.0 0.0 1.2 0.0 0.0 1.0 -2,-6 0.0049 11 4.236 MINOR ENSMUSG00000040612 Ildr2 ENSMUST00000193860 ENSMUSP00000141323 TRANSLATION protein_coding - - 1 553.0 0.0 1.2 0.0 0.0 1.0 -2,-6 0.004 11 4.236 MINOR ENSMUSG00000040612 Ildr2 ENSMUST00000192638 ENSMUSP00000142311 TRANSLATION protein_coding - - 1 642.0 0.0 1.7 0.0 82.0 2.0 -2,-6 0.8254 11 12.0 PRINCIPAL:1 ENSMUSG00000040612 Ildr2 ENSMUST00000111416 ENSMUSP00000107047 TRANSLATION protein_coding - CCDS48431.1 1 661.0 0.0 1.2 0.0 82.0 2.0 -2,-6 0.3855 11 10.236 MINOR ENSMUSG00000040612 Ildr2 ENSMUST00000195557 ENSMUSP00000142240 TRANSLATION protein_coding - - 1 427.0 0.0 1.2 0.0 82.0 2.0 -2,-6 0.0667 5 10.236 MINOR ENSMUSG00000040612 Ildr2 ENSMUST00000194964 ENSMUSP00000142152 TRANSLATION protein_coding - - 1 602.0 0.0 1.2 0.0 82.0 2.0 -2,-6 0.0937 11 10.236 MINOR ENSMUSG00000026377 Nifk ENSMUST00000112688 ENSMUSP00000108308 TRANSLATION protein_coding - - 5 269.0 0.0 3.73 0.0 108.4 0.0 -4,-5 0.0 4 8.238 MINOR ENSMUSG00000026377 Nifk ENSMUST00000161495 ENSMUSP00000125006 TRANSLATION protein_coding stop - 5 101.0 0.0 2.495 0.0 58.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026377 Nifk ENSMUST00000027626 ENSMUSP00000027626 TRANSLATION protein_coding - CCDS15222.1 1 317.0 0.0 4.73 0.0 137.8 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000037568 Vash2 ENSMUST00000192306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037568 Vash2 ENSMUST00000047409 ENSMUSP00000036768 TRANSLATION protein_coding - CCDS48482.1 1 355.0 0.0 4.45 11.3 403.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037568 Vash2 ENSMUST00000166139 ENSMUSP00000127626 TRANSLATION protein_coding - CCDS48482.1 1 355.0 0.0 4.45 11.3 403.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051344 Plekhm3 ENSMUST00000139649 ENSMUSP00000138002 TRANSLATION nonsense_mediated_decay - CCDS15009.1 1 761.0 12.0 3.05 12.5 263.0 0.0 -4,-5 1.0 3 -2.0 MINOR ENSMUSG00000051344 Plekhm3 ENSMUST00000097713 ENSMUSP00000095320 TRANSLATION protein_coding - CCDS15009.1 1 761.0 12.0 3.05 12.5 263.0 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000051344 Plekhm3 ENSMUST00000140857 - NO_TRANSLATION retained_intron ENSMUSG00000051344 Plekhm3 ENSMUST00000134097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051344 Plekhm3 ENSMUST00000187188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051344 Plekhm3 ENSMUST00000123225 ENSMUSP00000120872 TRANSLATION protein_coding stop - 2 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043716 Rpl7 ENSMUST00000151017 - NO_TRANSLATION retained_intron ENSMUSG00000043716 Rpl7 ENSMUST00000149566 ENSMUSP00000118695 TRANSLATION protein_coding start/stop - 3 279.0 0.0 4.8 0.0 190.0 0.0 -4,-6 0.0498 17 -2.0 MINOR ENSMUSG00000043716 Rpl7 ENSMUST00000141217 - NO_TRANSLATION retained_intron ENSMUSG00000043716 Rpl7 ENSMUST00000058437 ENSMUSP00000071616 TRANSLATION protein_coding - CCDS14829.1 1 270.0 0.0 5.3 0.0 190.0 0.0 -4,-5 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000043716 Rpl7 ENSMUST00000140597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043716 Rpl7 ENSMUST00000125005 - NO_TRANSLATION retained_intron ENSMUSG00000050122 Vwa3b ENSMUST00000195450 ENSMUSP00000142139 TRANSLATION protein_coding start - 5 145.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050122 Vwa3b ENSMUST00000117172 ENSMUSP00000114022 TRANSLATION protein_coding - - 2 343.0 0.0 0.0 0.0 8.1 0.0 -4,-5 0.0022 - 0.0 MINOR ENSMUSG00000050122 Vwa3b ENSMUST00000162449 ENSMUSP00000125460 TRANSLATION protein_coding - - 1 343.0 0.0 0.0 0.0 8.1 0.0 -4,-5 0.0022 - 0.0 MINOR ENSMUSG00000050122 Vwa3b ENSMUST00000067178 ENSMUSP00000069700 TRANSLATION protein_coding - - 2 343.0 0.0 0.0 0.0 8.1 0.0 -4,-5 0.0022 - 0.0 MINOR ENSMUSG00000050122 Vwa3b ENSMUST00000194320 - NO_TRANSLATION retained_intron ENSMUSG00000050122 Vwa3b ENSMUST00000027289 ENSMUSP00000027289 TRANSLATION nonsense_mediated_decay - - 5 736.0 5.0 0.0 0.0 56.1 0.0 -4,-5 0.0135 - -2.0 MINOR ENSMUSG00000050122 Vwa3b ENSMUST00000194890 - NO_TRANSLATION retained_intron ENSMUSG00000050122 Vwa3b ENSMUST00000238425 ENSMUSP00000158584 TRANSLATION nonsense_mediated_decay - - - 1240.0 5.0 0.0 0.0 165.9 0.0 -4,-5 0.4497 1 -2.0 MINOR ENSMUSG00000050122 Vwa3b ENSMUST00000194048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050122 Vwa3b ENSMUST00000124404 ENSMUSP00000141690 TRANSLATION non_stop_decay stop - 1 336.0 0.0 0.0 0.0 8.1 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000050122 Vwa3b ENSMUST00000238500 ENSMUSP00000158743 TRANSLATION protein_coding - - - 1221.0 5.0 0.0 0.0 165.9 0.0 -4,-5 0.9156 1 11.0 PRINCIPAL:1 ENSMUSG00000026246 Alppl2 ENSMUST00000190082 - NO_TRANSLATION retained_intron ENSMUSG00000026246 Alppl2 ENSMUST00000027455 ENSMUSP00000027455 TRANSLATION protein_coding - CCDS15126.1 1 529.0 12.0 10.05 0.4 623.8 0.0 2,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000026246 Alppl2 ENSMUST00000188310 ENSMUSP00000139887 TRANSLATION protein_coding - CCDS15126.1 1 529.0 12.0 10.05 0.4 623.8 0.0 2,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000026238 Ptma ENSMUST00000186255 ENSMUSP00000139690 TRANSLATION protein_coding - - 2 58.0 0.0 0.0 0.0 60.1 0.0 -4,-5 0.0 2 2.16 MINOR ENSMUSG00000026238 Ptma ENSMUST00000188533 ENSMUSP00000139849 TRANSLATION protein_coding - - 3 98.0 0.0 0.0 0.0 102.7 0.0 -4,-5 0.0012 2 4.716 MINOR ENSMUSG00000026238 Ptma ENSMUST00000186932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026238 Ptma ENSMUST00000045897 ENSMUSP00000044188 TRANSLATION protein_coding - CCDS35649.1 1 111.0 0.0 0.0 18.1 124.1 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000026238 Ptma ENSMUST00000188699 ENSMUSP00000140270 TRANSLATION protein_coding stop - 5 145.0 0.0 0.0 0.0 50.5 0.0 -4,-5 0.0001 2 -2.0 MINOR ENSMUSG00000026344 Lypd1 ENSMUST00000159529 ENSMUSP00000123824 TRANSLATION protein_coding - CCDS78672.1 2 89.0 0.0 1.8 1.0 0.0 0.0 -4,-6 0.1234 2 3.858 MINOR ENSMUSG00000026344 Lypd1 ENSMUST00000159417 ENSMUSP00000125149 TRANSLATION protein_coding - CCDS15243.1 1 141.0 0.0 2.8 13.5 0.0 0.0 3,-2 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000026344 Lypd1 ENSMUST00000161361 ENSMUSP00000124265 TRANSLATION protein_coding stop - 3 29.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0029 1 -2.0 MINOR ENSMUSG00000026344 Lypd1 ENSMUST00000027582 ENSMUSP00000027582 TRANSLATION protein_coding - CCDS78672.1 1 89.0 0.0 1.8 1.0 0.0 0.0 -4,-6 0.1234 2 3.858 MINOR ENSMUSG00000026344 Lypd1 ENSMUST00000162899 ENSMUSP00000125158 TRANSLATION protein_coding - CCDS78672.1 1 89.0 0.0 1.8 1.0 0.0 0.0 -4,-6 0.1234 2 3.858 MINOR ENSMUSG00000026088 Mitd1 ENSMUST00000139725 ENSMUSP00000123009 TRANSLATION protein_coding - CCDS35542.1 1 249.0 0.0 6.5 9.6 258.1 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000026088 Mitd1 ENSMUST00000027257 ENSMUSP00000027257 TRANSLATION protein_coding - CCDS35542.1 1 249.0 0.0 6.5 9.6 258.1 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000026088 Mitd1 ENSMUST00000127170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026088 Mitd1 ENSMUST00000138806 - NO_TRANSLATION retained_intron ENSMUSG00000026088 Mitd1 ENSMUST00000131754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039630 Hnrnpu ENSMUST00000150825 - NO_TRANSLATION retained_intron ENSMUSG00000039630 Hnrnpu ENSMUST00000037748 ENSMUSP00000047571 TRANSLATION protein_coding - CCDS35804.1 1 800.0 9.0 0.698 7.4 192.7 0.0 -4,-5 1.0 28 20.0 PRINCIPAL:1 ENSMUSG00000039630 Hnrnpu ENSMUST00000134291 - NO_TRANSLATION retained_intron ENSMUSG00000039630 Hnrnpu ENSMUST00000161769 ENSMUSP00000124147 TRANSLATION nonsense_mediated_decay,RT - - 1 793.0 9.0 0.698 0.0 192.7 0.0 -4,-5 0.1512 - -2.0 MINOR ENSMUSG00000039630 Hnrnpu ENSMUST00000162916 - NO_TRANSLATION retained_intron ENSMUSG00000039630 Hnrnpu ENSMUST00000189450 ENSMUSP00000139751 TRANSLATION nonsense_mediated_decay,RT start - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039630 Hnrnpu ENSMUST00000146362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039630 Hnrnpu ENSMUST00000188044 ENSMUSP00000139959 TRANSLATION nonsense_mediated_decay,RT start - 5 105.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039630 Hnrnpu ENSMUST00000159117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026048 Ercc5 ENSMUST00000145406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026048 Ercc5 ENSMUST00000139510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026048 Ercc5 ENSMUST00000155862 - NO_TRANSLATION retained_intron ENSMUSG00000026048 Ercc5 ENSMUST00000137380 - NO_TRANSLATION retained_intron ENSMUSG00000026048 Ercc5 ENSMUST00000131177 - NO_TRANSLATION retained_intron ENSMUSG00000026048 Ercc5 ENSMUST00000188376 - NO_TRANSLATION retained_intron ENSMUSG00000026048 Ercc5 ENSMUST00000027214 ENSMUSP00000027214 TRANSLATION protein_coding - CCDS35553.1 1 1170.0 0.0 4.55 0.1 201.0 0.0 -4,-7 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000073530 Pappa2 ENSMUST00000160206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073530 Pappa2 ENSMUST00000159860 - NO_TRANSLATION retained_intron ENSMUSG00000073530 Pappa2 ENSMUST00000177789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073530 Pappa2 ENSMUST00000159861 ENSMUSP00000124022 TRANSLATION protein_coding - CCDS48409.1 5 1789.0 4.0 2.04 5.0 192.2 0.0 1,-3 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000073530 Pappa2 ENSMUST00000159892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073530 Pappa2 ENSMUST00000161589 ENSMUSP00000124316 TRANSLATION protein_coding start/stop - 5 246.0 0.0 1.1 0.0 42.2 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000038331 Satb2 ENSMUST00000177424 ENSMUSP00000135391 TRANSLATION protein_coding - - 5 615.0 0.0 5.6 0.0 244.8 0.0 -4,-7 0.0024 3 0.0 MINOR ENSMUSG00000038331 Satb2 ENSMUST00000177282 ENSMUSP00000135542 TRANSLATION protein_coding stop - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038331 Satb2 ENSMUST00000114415 ENSMUSP00000110057 TRANSLATION protein_coding - CCDS14965.1 1 733.0 0.0 8.6 19.3 458.6 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000038331 Satb2 ENSMUST00000042857 ENSMUSP00000046067 TRANSLATION protein_coding - - 1 674.0 0.0 7.1 2.3 387.0 0.0 -4,-6 0.0592 4 4.988 MINOR ENSMUSG00000038331 Satb2 ENSMUST00000176759 ENSMUSP00000135163 TRANSLATION protein_coding stop - 3 104.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042581 Thsd7b ENSMUST00000140834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042581 Thsd7b ENSMUST00000151700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042581 Thsd7b ENSMUST00000143130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042581 Thsd7b ENSMUST00000148051 - NO_TRANSLATION retained_intron ENSMUSG00000042581 Thsd7b ENSMUST00000040311 ENSMUSP00000041716 TRANSLATION protein_coding - - 1 1107.0 21.0 0.72 0.0 138.3 0.0 1,-4 0.0129 2 7.806 MINOR ENSMUSG00000042581 Thsd7b ENSMUST00000073527 ENSMUSP00000073220 TRANSLATION protein_coding - CCDS15255.1 1 1607.0 27.0 1.12 10.7 205.8 0.0 1,-4 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000042581 Thsd7b ENSMUST00000140629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042581 Thsd7b ENSMUST00000152305 ENSMUSP00000117750 TRANSLATION protein_coding stop - 5 379.0 9.0 0.5 0.0 54.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042581 Thsd7b ENSMUST00000190870 - NO_TRANSLATION retained_intron ENSMUSG00000067064 Or6b2 ENSMUST00000086837 ENSMUSP00000084048 TRANSLATION protein_coding - CCDS15168.1 - 312.0 0.0 1.0 12.5 178.5 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067064 Or6b2 ENSMUST00000214928 ENSMUSP00000149576 TRANSLATION protein_coding - CCDS15168.1 3 312.0 0.0 1.0 12.5 178.5 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003721 Insig2 ENSMUST00000186915 ENSMUSP00000140292 TRANSLATION protein_coding - CCDS78670.1 3 117.0 0.0 2.165 10.7 103.4 5.0 -3,-6 0.3501 - 4.556 MINOR ENSMUSG00000003721 Insig2 ENSMUST00000003818 ENSMUSP00000003818 TRANSLATION protein_coding - CCDS15236.1 1 225.0 0.0 5.025 24.5 159.7 11.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000003721 Insig2 ENSMUST00000160688 ENSMUSP00000123702 TRANSLATION protein_coding stop - 3 78.0 0.0 1.78 0.0 0.0 3.0 -4,-6 0.0017 - -2.0 MINOR ENSMUSG00000003721 Insig2 ENSMUST00000160968 ENSMUSP00000123747 TRANSLATION protein_coding - CCDS15236.1 5 225.0 0.0 5.025 24.5 159.7 11.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000003721 Insig2 ENSMUST00000159125 ENSMUSP00000123729 TRANSLATION protein_coding stop - 2 59.0 0.0 1.53 0.0 0.0 3.0 -4,-6 0.0002 - -2.0 MINOR ENSMUSG00000003721 Insig2 ENSMUST00000159192 - NO_TRANSLATION retained_intron ENSMUSG00000003721 Insig2 ENSMUST00000071064 ENSMUSP00000065485 TRANSLATION protein_coding - CCDS15236.1 1 225.0 0.0 5.025 24.5 159.7 11.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000003721 Insig2 ENSMUST00000159528 - NO_TRANSLATION retained_intron ENSMUSG00000003721 Insig2 ENSMUST00000162019 - NO_TRANSLATION retained_intron ENSMUSG00000003721 Insig2 ENSMUST00000162582 ENSMUSP00000125046 TRANSLATION protein_coding stop - 5 90.0 0.0 2.11 0.0 0.0 3.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000003721 Insig2 ENSMUST00000161818 ENSMUSP00000123993 TRANSLATION protein_coding stop - 2 35.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003721 Insig2 ENSMUST00000159085 ENSMUSP00000124345 TRANSLATION protein_coding - CCDS15236.1 1 225.0 0.0 5.025 24.5 159.7 11.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000003721 Insig2 ENSMUST00000161068 ENSMUSP00000125216 TRANSLATION protein_coding stop - 5 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003721 Insig2 ENSMUST00000162790 ENSMUSP00000124697 TRANSLATION protein_coding stop - 3 146.0 0.0 4.11 0.0 102.7 6.0 -4,-6 0.0036 - -2.0 MINOR ENSMUSG00000015843 Rxrg ENSMUST00000015987 ENSMUSP00000015987 TRANSLATION protein_coding - CCDS15459.1 1 463.0 26.0 7.55 14.5 364.8 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000015843 Rxrg ENSMUST00000111386 ENSMUSP00000107017 TRANSLATION protein_coding - CCDS15459.1 5 463.0 26.0 7.55 14.5 364.8 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000015843 Rxrg ENSMUST00000111380 ENSMUSP00000107011 TRANSLATION protein_coding - CCDS48435.1 1 340.0 26.0 7.55 7.8 239.7 0.0 -4,-5 0.34 3 14.016 MINOR ENSMUSG00000015843 Rxrg ENSMUST00000111384 ENSMUSP00000107015 TRANSLATION protein_coding - CCDS15459.1 5 463.0 26.0 7.55 14.5 364.8 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000041406 Firrm ENSMUST00000162949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041406 Firrm ENSMUST00000045876 ENSMUSP00000043143 TRANSLATION protein_coding - CCDS35752.1 1 903.0 0.0 0.0 4.0 614.4 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000041406 Firrm ENSMUST00000161321 - NO_TRANSLATION retained_intron ENSMUSG00000041406 Firrm ENSMUST00000160926 ENSMUSP00000124826 TRANSLATION nonsense_mediated_decay - - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041406 Firrm ENSMUST00000159617 ENSMUSP00000125075 TRANSLATION nonsense_mediated_decay start - 2 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041406 Firrm ENSMUST00000097493 ENSMUSP00000095101 TRANSLATION protein_coding - - 1 927.0 0.0 0.0 0.0 614.4 0.0 -4,-5 0.1458 1 6.0 MINOR ENSMUSG00000033364 Usp37 ENSMUST00000188012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033364 Usp37 ENSMUST00000186282 ENSMUSP00000140158 TRANSLATION protein_coding stop - 3 22.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033364 Usp37 ENSMUST00000191058 - NO_TRANSLATION retained_intron ENSMUSG00000033364 Usp37 ENSMUST00000187590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033364 Usp37 ENSMUST00000044260 ENSMUSP00000035445 TRANSLATION protein_coding - CCDS78616.1 5 957.0 4.0 7.0125 8.2 398.5 0.0 -4,-5 0.9419 5 14.634 ALTERNATIVE:1 ENSMUSG00000033364 Usp37 ENSMUST00000190592 - NO_TRANSLATION retained_intron ENSMUSG00000033364 Usp37 ENSMUST00000189257 ENSMUSP00000140670 TRANSLATION protein_coding - CCDS15050.1 1 979.0 4.0 7.0125 9.2 398.2 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:4 ENSMUSG00000050134 Or6n2 ENSMUST00000214390 ENSMUSP00000150930 TRANSLATION protein_coding - CCDS48454.1 5 317.0 0.0 1.0 13.6 218.1 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000050134 Or6n2 ENSMUST00000213425 ENSMUSP00000150451 TRANSLATION protein_coding - CCDS48454.1 5 317.0 0.0 1.0 13.6 218.1 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000050134 Or6n2 ENSMUST00000055873 ENSMUSP00000130615 TRANSLATION protein_coding - CCDS48454.1 - 317.0 0.0 1.0 13.6 218.1 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000059956 Serpinb12 ENSMUST00000081277 ENSMUSP00000080030 TRANSLATION protein_coding - CCDS15212.1 1 423.0 0.0 5.3 9.0 451.1 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000059956 Serpinb12 ENSMUST00000126812 - NO_TRANSLATION retained_intron ENSMUSG00000059956 Serpinb12 ENSMUST00000112724 ENSMUSP00000108344 TRANSLATION protein_coding - CCDS15212.1 1 423.0 0.0 5.3 9.0 451.1 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000026149 Tm4sf20 ENSMUST00000027331 ENSMUSP00000027331 TRANSLATION protein_coding - CCDS15099.1 1 226.0 0.0 0.41 10.4 204.9 0.0 -1,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026149 Tm4sf20 ENSMUST00000138787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047443 Erfe ENSMUST00000190998 ENSMUSP00000140509 TRANSLATION protein_coding start - 5 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0187 - -2.0 MINOR ENSMUSG00000047443 Erfe ENSMUST00000086861 ENSMUSP00000084073 TRANSLATION protein_coding - CCDS48323.1 1 340.0 0.0 0.0 0.1 0.0 0.0 1,-3 0.9747 1 0.0 PRINCIPAL:1 ENSMUSG00000079445 B3gnt7 ENSMUST00000188695 ENSMUSP00000140392 TRANSLATION protein_coding stop - 1 155.0 0.0 1.0 0.0 106.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000079445 B3gnt7 ENSMUST00000113306 ENSMUSP00000108931 TRANSLATION protein_coding - CCDS35645.1 1 397.0 0.0 2.6 8.5 164.2 0.0 1,-3 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000079445 B3gnt7 ENSMUST00000189618 - NO_TRANSLATION retained_intron ENSMUSG00000026434 Nucks1 ENSMUST00000187405 - NO_TRANSLATION retained_intron ENSMUSG00000026434 Nucks1 ENSMUST00000062264 ENSMUSP00000062576 TRANSLATION protein_coding - CCDS48356.1 1 234.0 0.0 0.0 5.9 0.0 0.0 -4,-5 1.0 5 2.0 PRINCIPAL:4 ENSMUSG00000026434 Nucks1 ENSMUST00000189946 ENSMUSP00000140818 TRANSLATION protein_coding - CCDS78678.1 1 233.0 0.0 0.0 4.5 0.0 0.0 -4,-5 0.8829 5 1.428 ALTERNATIVE:1 ENSMUSG00000058715 Fcer1g ENSMUST00000193973 ENSMUSP00000141240 TRANSLATION protein_coding - - 3 92.0 0.0 1.5 0.0 58.0 1.0 3,-2 0.0037 - 9.216 MINOR ENSMUSG00000058715 Fcer1g ENSMUST00000079957 ENSMUSP00000078875 TRANSLATION protein_coding - CCDS15483.1 1 86.0 0.0 1.83 3.1 81.0 1.0 3,-2 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000058715 Fcer1g ENSMUST00000150997 - NO_TRANSLATION retained_intron ENSMUSG00000026096 Osgepl1 ENSMUST00000135786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026096 Osgepl1 ENSMUST00000114484 ENSMUSP00000110128 TRANSLATION protein_coding - CCDS14953.1 1 414.0 16.0 6.25 7.4 263.9 0.0 -4,0 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000026096 Osgepl1 ENSMUST00000150115 - NO_TRANSLATION retained_intron ENSMUSG00000026096 Osgepl1 ENSMUST00000135614 ENSMUSP00000137994 TRANSLATION nonsense_mediated_decay - - 1 371.0 16.0 5.08 0.0 263.9 0.0 -4,0 0.0199 2 -2.0 MINOR ENSMUSG00000026096 Osgepl1 ENSMUST00000153939 - NO_TRANSLATION retained_intron ENSMUSG00000026096 Osgepl1 ENSMUST00000151296 ENSMUSP00000137772 TRANSLATION nonsense_mediated_decay - - 1 100.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000026096 Osgepl1 ENSMUST00000027265 ENSMUSP00000027265 TRANSLATION protein_coding - CCDS14953.1 1 414.0 16.0 6.25 7.4 263.9 0.0 -4,0 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000032666 1700025G04Rik ENSMUST00000121533 ENSMUSP00000113971 TRANSLATION nonsense_mediated_decay - - 1 78.0 0.0 0.0 0.0 74.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032666 1700025G04Rik ENSMUST00000187603 ENSMUSP00000140950 TRANSLATION nonsense_mediated_decay - CCDS35737.1 1 121.0 0.0 1.15 28.9 150.9 0.0 -4,-5 1.0 1 -2.0 MINOR ENSMUSG00000032666 1700025G04Rik ENSMUST00000128433 - NO_TRANSLATION retained_intron ENSMUSG00000032666 1700025G04Rik ENSMUST00000044581 ENSMUSP00000036406 TRANSLATION protein_coding - CCDS35737.1 1 121.0 0.0 1.15 28.9 150.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000039997 Ifi203 ENSMUST00000042228 ENSMUSP00000042071 TRANSLATION protein_coding - CCDS48453.1 1 457.0 0.0 3.15 0.0 285.3 0.0 -4,-5 0.3128 11 8.0 ALTERNATIVE:2 ENSMUSG00000039997 Ifi203 ENSMUST00000128430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039997 Ifi203 ENSMUST00000140143 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039997 Ifi203 ENSMUST00000138143 - NO_TRANSLATION retained_intron ENSMUSG00000039997 Ifi203 ENSMUST00000123708 ENSMUSP00000121480 TRANSLATION protein_coding - CCDS35793.1 1 409.0 0.0 3.15 0.0 285.3 0.0 -4,-5 1.0 10 8.0 PRINCIPAL:2 ENSMUSG00000039997 Ifi203 ENSMUST00000129829 ENSMUSP00000122424 TRANSLATION protein_coding - CCDS78754.1 1 871.0 0.0 3.15 0.0 285.3 0.0 -4,-5 0.5061 17 8.0 ALTERNATIVE:2 ENSMUSG00000039997 Ifi203 ENSMUST00000156895 ENSMUSP00000114221 TRANSLATION protein_coding - CCDS48453.1 1 457.0 0.0 3.15 0.0 285.3 0.0 -4,-5 0.3128 11 8.0 ALTERNATIVE:2 ENSMUSG00000039997 Ifi203 ENSMUST00000135331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039997 Ifi203 ENSMUST00000081216 ENSMUSP00000079976 TRANSLATION protein_coding - CCDS35793.1 1 409.0 0.0 3.15 0.0 285.3 0.0 -4,-5 1.0 10 8.0 PRINCIPAL:2 ENSMUSG00000026004 Kansl1l ENSMUST00000132960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026004 Kansl1l ENSMUST00000068168 ENSMUSP00000063843 TRANSLATION protein_coding - CCDS35603.1 1 947.0 0.0 0.0 4.1 84.7 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000026004 Kansl1l ENSMUST00000113987 ENSMUSP00000109620 TRANSLATION protein_coding - - 1 700.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0059 1 0.0 MINOR ENSMUSG00000026004 Kansl1l ENSMUST00000189846 - NO_TRANSLATION retained_intron ENSMUSG00000026004 Kansl1l ENSMUST00000129190 ENSMUSP00000118603 TRANSLATION protein_coding start - 1 647.0 0.0 0.0 0.0 84.7 0.0 -4,-6 0.0575 2 -2.0 MINOR ENSMUSG00000039377 Hlx ENSMUST00000174257 ENSMUSP00000134728 TRANSLATION protein_coding start - 2 196.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039377 Hlx ENSMUST00000048572 ENSMUSP00000040505 TRANSLATION protein_coding - CCDS15593.1 1 476.0 0.0 1.8 0.4 69.6 0.0 -3,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079550 Mpp4 ENSMUST00000186477 ENSMUSP00000140352 TRANSLATION protein_coding - - 5 591.0 20.0 6.405 0.0 253.1 0.0 -4,-5 0.0242 - 11.648 MINOR ENSMUSG00000079550 Mpp4 ENSMUST00000078874 ENSMUSP00000077914 TRANSLATION protein_coding - CCDS48271.1 1 635.0 20.0 7.58 7.7 253.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000079550 Mpp4 ENSMUST00000114275 ENSMUSP00000109914 TRANSLATION protein_coding - CCDS48272.1 2 654.0 20.0 7.58 0.0 253.1 0.0 -4,-7 0.175 - 14.0 MINOR ENSMUSG00000079550 Mpp4 ENSMUST00000188494 - NO_TRANSLATION retained_intron ENSMUSG00000079550 Mpp4 ENSMUST00000191200 ENSMUSP00000140957 TRANSLATION protein_coding - - 1 629.0 20.0 6.1225 4.4 253.1 0.0 -4,-5 0.6302 - 12.098 MINOR ENSMUSG00000079550 Mpp4 ENSMUST00000189884 - NO_TRANSLATION retained_intron ENSMUSG00000079550 Mpp4 ENSMUST00000189743 - NO_TRANSLATION retained_intron ENSMUSG00000079550 Mpp4 ENSMUST00000186790 - NO_TRANSLATION retained_intron ENSMUSG00000079550 Mpp4 ENSMUST00000187825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079550 Mpp4 ENSMUST00000066374 ENSMUSP00000070711 TRANSLATION protein_coding - - 5 635.0 20.0 7.58 7.7 253.1 0.0 -4,-5 0.8493 - 16.0 ALTERNATIVE:1 ENSMUSG00000033671 Cep350 ENSMUST00000124495 ENSMUSP00000121043 TRANSLATION protein_coding stop - 1 381.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0014 3 -2.0 MINOR ENSMUSG00000033671 Cep350 ENSMUST00000192899 - NO_TRANSLATION retained_intron ENSMUSG00000033671 Cep350 ENSMUST00000146987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033671 Cep350 ENSMUST00000138762 ENSMUSP00000120085 TRANSLATION protein_coding - CCDS48400.1 5 3095.0 0.0 0.2 0.0 71.3 0.0 -4,-6 1.0 27 12.0 PRINCIPAL:1 ENSMUSG00000033671 Cep350 ENSMUST00000129865 ENSMUSP00000148802 TRANSLATION protein_coding start/stop - 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0025 4 -2.0 MINOR ENSMUSG00000033671 Cep350 ENSMUST00000132189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026126 Ptpn18 ENSMUST00000027302 ENSMUSP00000027302 TRANSLATION protein_coding - CCDS14867.1 1 453.0 11.0 9.264 5.3 257.4 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000026126 Ptpn18 ENSMUST00000188972 ENSMUSP00000140436 TRANSLATION protein_coding - - 1 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000026126 Ptpn18 ENSMUST00000188884 - NO_TRANSLATION retained_intron ENSMUSG00000026126 Ptpn18 ENSMUST00000186252 - NO_TRANSLATION retained_intron ENSMUSG00000026126 Ptpn18 ENSMUST00000185610 - NO_TRANSLATION retained_intron ENSMUSG00000026126 Ptpn18 ENSMUST00000188019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026126 Ptpn18 ENSMUST00000190122 ENSMUSP00000139885 TRANSLATION protein_coding stop - 5 289.0 11.0 8.514 0.0 257.4 0.0 -4,-6 0.0119 3 -2.0 MINOR ENSMUSG00000010311 Optc ENSMUST00000153617 ENSMUSP00000123262 TRANSLATION protein_coding - CCDS48366.1 1 328.0 0.0 3.4 0.0 10.9 0.0 -4,-7 0.0098 - 5.436 MINOR ENSMUSG00000010311 Optc ENSMUST00000124051 ENSMUSP00000120568 TRANSLATION protein_coding - CCDS15299.2 1 381.0 0.0 4.4 0.3 45.7 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000010311 Optc ENSMUST00000124245 - NO_TRANSLATION retained_intron ENSMUSG00000010311 Optc ENSMUST00000149380 ENSMUSP00000115661 TRANSLATION protein_coding - CCDS48366.1 1 328.0 0.0 3.4 0.0 10.9 0.0 -4,-7 0.0098 - 5.436 MINOR ENSMUSG00000010311 Optc ENSMUST00000126123 ENSMUSP00000117086 TRANSLATION protein_coding start - 1 300.0 0.0 2.5 0.0 45.7 0.0 -4,-2 0.0274 - -2.0 MINOR ENSMUSG00000047180 Neurl3 ENSMUST00000188666 ENSMUSP00000139665 TRANSLATION protein_coding - - 5 195.0 0.0 0.6 0.0 134.9 0.0 -4,-5 0.0 - 6.066 MINOR ENSMUSG00000047180 Neurl3 ENSMUST00000056946 ENSMUSP00000055437 TRANSLATION protein_coding - CCDS14875.1 1 254.0 8.0 1.2 2.0 183.8 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000026520 Pycr2 ENSMUST00000195270 - NO_TRANSLATION retained_intron ENSMUSG00000026520 Pycr2 ENSMUST00000194253 - NO_TRANSLATION retained_intron ENSMUSG00000026520 Pycr2 ENSMUST00000194026 - NO_TRANSLATION retained_intron ENSMUSG00000026520 Pycr2 ENSMUST00000027802 ENSMUSP00000027802 TRANSLATION protein_coding - CCDS15576.1 1 320.0 21.0 5.9 20.1 196.3 0.0 -3,-1 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000026602 Nphs2 ENSMUST00000193020 ENSMUSP00000141328 TRANSLATION protein_coding start - 5 265.0 0.0 4.1 0.0 57.6 1.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000026602 Nphs2 ENSMUST00000027896 ENSMUSP00000027896 TRANSLATION protein_coding - CCDS15391.1 1 385.0 0.0 5.35 5.5 94.1 1.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025902 Sox17 ENSMUST00000192913 ENSMUSP00000141674 TRANSLATION protein_coding stop - 5 169.0 0.0 2.35 0.0 91.7 0.0 -4,-5 0.0236 2 -2.0 MINOR ENSMUSG00000025902 Sox17 ENSMUST00000116652 ENSMUSP00000112351 TRANSLATION protein_coding - CCDS14805.1 1 419.0 0.0 2.35 4.2 162.5 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000025902 Sox17 ENSMUST00000195555 ENSMUSP00000141894 TRANSLATION protein_coding - CCDS78538.1 5 291.0 0.0 1.0 0.0 70.8 0.0 -4,-7 0.0157 1 3.054 MINOR ENSMUSG00000025902 Sox17 ENSMUST00000191939 ENSMUSP00000142154 TRANSLATION protein_coding stop - 1 170.0 0.0 2.35 0.0 91.7 0.0 -4,-5 0.0236 2 -2.0 MINOR ENSMUSG00000025902 Sox17 ENSMUST00000027035 ENSMUSP00000027035 TRANSLATION protein_coding - CCDS14805.1 1 419.0 0.0 2.35 4.2 162.5 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000025902 Sox17 ENSMUST00000191647 ENSMUSP00000142204 TRANSLATION protein_coding stop - 5 107.0 0.0 1.882 0.0 34.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025902 Sox17 ENSMUST00000192650 ENSMUSP00000142116 TRANSLATION protein_coding - CCDS78539.1 1 354.0 0.0 1.882 0.0 105.6 0.0 -4,-5 0.0091 1 7.392 MINOR ENSMUSG00000025902 Sox17 ENSMUST00000192505 - NO_TRANSLATION retained_intron ENSMUSG00000026568 Mpc2 ENSMUST00000195026 - NO_TRANSLATION retained_intron ENSMUSG00000026568 Mpc2 ENSMUST00000193575 ENSMUSP00000142329 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000026568 Mpc2 ENSMUST00000128633 - NO_TRANSLATION retained_intron ENSMUSG00000026568 Mpc2 ENSMUST00000138999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026568 Mpc2 ENSMUST00000027853 ENSMUSP00000027853 TRANSLATION protein_coding - CCDS15442.1 1 127.0 0.0 3.58 12.6 133.9 0.0 -4,-2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000026357 Rgs18 ENSMUST00000027603 ENSMUSP00000027603 TRANSLATION protein_coding - CCDS15350.1 1 235.0 0.0 2.75 14.5 125.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000016493 Cd46 ENSMUST00000159563 ENSMUSP00000123901 TRANSLATION nonsense_mediated_decay - - 1 300.0 0.0 4.44 0.0 156.7 0.0 -2,-5 0.0171 3 -2.0 MINOR ENSMUSG00000016493 Cd46 ENSMUST00000162650 ENSMUSP00000123931 TRANSLATION protein_coding - CCDS35828.1 1 365.0 0.0 4.74 0.0 156.7 0.0 -2,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000016493 Cd46 ENSMUST00000162951 - NO_TRANSLATION retained_intron ENSMUSG00000016493 Cd46 ENSMUST00000161772 - NO_TRANSLATION retained_intron ENSMUSG00000060244 Alyref2 ENSMUST00000081527 ENSMUSP00000080242 TRANSLATION protein_coding - CCDS15497.1 - 218.0 0.0 1.0 0.0 107.7 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000026439 Rbbp5 ENSMUST00000190997 ENSMUSP00000141003 TRANSLATION protein_coding - CCDS15286.1 1 538.0 0.0 10.6 22.2 23.8 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:4 ENSMUSG00000026439 Rbbp5 ENSMUST00000027700 ENSMUSP00000027700 TRANSLATION protein_coding - - 1 373.0 0.0 6.95 0.0 0.0 0.0 -4,-7 0.0013 8 0.0 MINOR ENSMUSG00000026439 Rbbp5 ENSMUST00000189786 ENSMUSP00000140790 TRANSLATION protein_coding stop - 3 149.0 0.0 3.91 0.0 23.8 0.0 -4,-7 0.0049 5 -2.0 MINOR ENSMUSG00000026439 Rbbp5 ENSMUST00000187505 ENSMUSP00000141176 TRANSLATION protein_coding - - 5 410.0 0.0 6.95 7.8 0.0 0.0 -4,-7 0.1651 8 1.284 MINOR ENSMUSG00000026439 Rbbp5 ENSMUST00000188575 ENSMUSP00000140344 TRANSLATION protein_coding stop - 1 107.0 0.0 3.15 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026439 Rbbp5 ENSMUST00000190825 ENSMUSP00000139519 TRANSLATION protein_coding - - 1 537.0 0.0 10.6 22.2 23.8 0.0 -4,-5 0.8533 10 12.0 ALTERNATIVE:1 ENSMUSG00000026439 Rbbp5 ENSMUST00000187834 - NO_TRANSLATION retained_intron ENSMUSG00000057464 Or6b2b ENSMUST00000071521 ENSMUSP00000084047 TRANSLATION protein_coding - CCDS15169.1 - 311.0 0.0 2.0 14.6 180.7 7.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057464 Or6b2b ENSMUST00000204009 ENSMUSP00000145446 TRANSLATION protein_coding - CCDS15169.1 3 311.0 0.0 2.0 14.6 180.7 7.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057464 Or6b2b ENSMUST00000204766 ENSMUSP00000144986 TRANSLATION protein_coding - - 3 71.0 0.0 1.0 0.0 0.0 2.0 -3,-5 0.0002 - 3.0 MINOR ENSMUSG00000032883 Acsl3 ENSMUST00000134566 ENSMUSP00000117952 TRANSLATION protein_coding - CCDS48295.1 1 568.0 23.0 6.267 0.0 323.5 0.0 -4,-7 0.0334 17 15.474 MINOR ENSMUSG00000032883 Acsl3 ENSMUST00000132997 - NO_TRANSLATION retained_intron ENSMUSG00000032883 Acsl3 ENSMUST00000135642 ENSMUSP00000116576 TRANSLATION protein_coding stop - 3 141.0 0.0 0.0 0.0 0.0 1.0 -4,-6 0.0013 - -2.0 MINOR ENSMUSG00000032883 Acsl3 ENSMUST00000148608 - NO_TRANSLATION retained_intron ENSMUSG00000032883 Acsl3 ENSMUST00000035779 ENSMUSP00000045291 TRANSLATION protein_coding - CCDS15087.1 1 720.0 23.0 6.847 0.0 346.3 1.0 -4,-6 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000032883 Acsl3 ENSMUST00000154777 - NO_TRANSLATION retained_intron ENSMUSG00000032883 Acsl3 ENSMUST00000142704 ENSMUSP00000121695 TRANSLATION protein_coding - CCDS15087.1 1 720.0 23.0 6.847 0.0 346.3 1.0 -4,-6 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000059149 Mfsd4a ENSMUST00000163016 - NO_TRANSLATION retained_intron ENSMUSG00000059149 Mfsd4a ENSMUST00000159038 ENSMUSP00000125558 TRANSLATION protein_coding - CCDS48357.1 5 510.0 0.0 0.0 9.5 40.1 30.0 -4,-6 1.0 6 7.824 PRINCIPAL:1 ENSMUSG00000059149 Mfsd4a ENSMUST00000189227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059149 Mfsd4a ENSMUST00000159382 - NO_TRANSLATION retained_intron ENSMUSG00000059149 Mfsd4a ENSMUST00000162628 ENSMUSP00000124786 TRANSLATION nonsense_mediated_decay start - 5 67.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000059149 Mfsd4a ENSMUST00000046658 ENSMUSP00000039635 TRANSLATION protein_coding - - 1 358.0 0.0 0.0 0.0 0.0 24.0 -4,-6 0.0042 2 0.0 MINOR ENSMUSG00000059149 Mfsd4a ENSMUST00000112370 ENSMUSP00000107989 TRANSLATION protein_coding - CCDS15280.2 1 512.0 0.0 0.0 0.4 38.5 30.0 -4,-6 0.3613 4 4.632 MINOR ENSMUSG00000059149 Mfsd4a ENSMUST00000126927 ENSMUSP00000116706 TRANSLATION protein_coding - CCDS15280.2 1 512.0 0.0 0.0 0.4 38.5 30.0 -4,-6 0.3613 4 4.632 MINOR ENSMUSG00000059149 Mfsd4a ENSMUST00000112365 ENSMUSP00000107984 TRANSLATION protein_coding - - 5 464.0 0.0 0.0 0.1 49.9 24.0 -4,-6 0.1058 4 6.0 MINOR ENSMUSG00000059149 Mfsd4a ENSMUST00000144548 ENSMUSP00000116282 TRANSLATION protein_coding - CCDS15280.2 1 512.0 0.0 0.0 0.4 38.5 30.0 -4,-6 0.3613 4 4.632 MINOR ENSMUSG00000059149 Mfsd4a ENSMUST00000146267 ENSMUSP00000117864 TRANSLATION nonsense_mediated_decay - - 1 88.0 0.0 0.0 0.0 0.0 5.0 -4,-6 0.0026 - -2.0 MINOR ENSMUSG00000059149 Mfsd4a ENSMUST00000160656 ENSMUSP00000125138 TRANSLATION protein_coding start - 5 406.0 0.0 0.0 0.0 34.1 21.0 0,-3 0.0118 4 -2.0 MINOR ENSMUSG00000059149 Mfsd4a ENSMUST00000161864 ENSMUSP00000124961 TRANSLATION protein_coding stop - 5 425.0 0.0 0.0 0.0 34.1 25.0 -4,-6 0.0157 5 -2.0 MINOR ENSMUSG00000026782 Abi2 ENSMUST00000189082 ENSMUSP00000140522 TRANSLATION protein_coding stop - 5 151.0 0.0 2.726 0.0 118.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026782 Abi2 ENSMUST00000052332 ENSMUSP00000058754 TRANSLATION protein_coding - CCDS14991.1 1 446.0 0.0 5.942 15.6 182.5 0.0 -4,-5 1.0 5 14.074 MINOR ENSMUSG00000026782 Abi2 ENSMUST00000189980 ENSMUSP00000141068 TRANSLATION protein_coding - CCDS78594.1 1 480.0 0.0 6.008 0.0 183.2 0.0 -4,-5 0.4239 5 12.0 MINOR ENSMUSG00000026782 Abi2 ENSMUST00000185788 ENSMUSP00000139483 TRANSLATION protein_coding start - 5 360.0 0.0 3.678 0.0 154.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026782 Abi2 ENSMUST00000187709 ENSMUSP00000139867 TRANSLATION protein_coding - - 5 475.0 0.0 5.942 27.0 182.5 0.0 -4,-5 0.9604 5 15.826 PRINCIPAL:1 ENSMUSG00000026782 Abi2 ENSMUST00000186097 ENSMUSP00000139501 TRANSLATION protein_coding start - 5 395.0 0.0 2.678 0.0 64.4 0.0 -4,-6 0.0003 2 -2.0 MINOR ENSMUSG00000026782 Abi2 ENSMUST00000189649 - NO_TRANSLATION retained_intron ENSMUSG00000026782 Abi2 ENSMUST00000190158 ENSMUSP00000139743 TRANSLATION protein_coding start - 5 337.0 0.0 2.348 0.0 64.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026782 Abi2 ENSMUST00000187400 ENSMUSP00000139646 TRANSLATION protein_coding start - 5 252.0 0.0 2.612 0.0 64.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026782 Abi2 ENSMUST00000188594 ENSMUSP00000140750 TRANSLATION protein_coding - - 5 458.0 0.0 5.942 8.7 182.5 0.0 -4,-5 0.4376 3 13.01 MINOR ENSMUSG00000026782 Abi2 ENSMUST00000191493 - NO_TRANSLATION retained_intron ENSMUSG00000026782 Abi2 ENSMUST00000188618 ENSMUSP00000140274 TRANSLATION protein_coding - CCDS78593.1 1 487.0 0.0 5.258 0.0 153.1 0.0 -4,-5 0.056 5 8.694 MINOR ENSMUSG00000026700 Tnfsf4 ENSMUST00000028024 ENSMUSP00000028024 TRANSLATION protein_coding - CCDS15416.1 1 198.0 0.0 1.5 0.4 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000090550 Prlh ENSMUST00000166281 ENSMUSP00000130768 TRANSLATION protein_coding - CCDS48318.1 1 86.0 0.0 0.0 0.0 92.9 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000026343 Gpr39 ENSMUST00000159359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026343 Gpr39 ENSMUST00000027581 ENSMUSP00000027581 TRANSLATION protein_coding - CCDS48344.1 1 456.0 0.0 0.6 5.7 119.1 0.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000117091 Gm5698 ENSMUST00000178317 ENSMUSP00000156551 TRANSLATION protein_coding - - - 241.0 0.0 0.64 0.0 72.2 0.0 -4,-5 0.7709 - 12.0 PRINCIPAL:1 ENSMUSG00000026087 Mrpl30 ENSMUST00000162513 - NO_TRANSLATION retained_intron ENSMUSG00000026087 Mrpl30 ENSMUST00000194857 ENSMUSP00000142168 TRANSLATION protein_coding stop - 1 128.0 0.0 2.45 0.0 50.1 0.0 -4,-1 0.0075 2 -2.0 MINOR ENSMUSG00000026087 Mrpl30 ENSMUST00000027256 ENSMUSP00000027256 TRANSLATION protein_coding - CCDS14896.1 1 160.0 0.0 3.45 12.3 50.1 0.0 -4,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000026087 Mrpl30 ENSMUST00000193673 ENSMUSP00000141654 TRANSLATION protein_coding - CCDS14896.1 2 160.0 0.0 3.45 12.3 50.1 0.0 -4,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000026087 Mrpl30 ENSMUST00000195373 ENSMUSP00000141693 TRANSLATION protein_coding - CCDS14896.1 2 160.0 0.0 3.45 12.3 50.1 0.0 -4,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000026087 Mrpl30 ENSMUST00000161694 - NO_TRANSLATION retained_intron ENSMUSG00000026087 Mrpl30 ENSMUST00000160082 ENSMUSP00000141883 TRANSLATION protein_coding stop - 3 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038026 Kcnj9 ENSMUST00000194860 - NO_TRANSLATION retained_intron ENSMUSG00000038026 Kcnj9 ENSMUST00000194204 ENSMUSP00000141633 TRANSLATION protein_coding - CCDS35783.1 1 393.0 0.0 2.0 6.7 465.5 2.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000038026 Kcnj9 ENSMUST00000062387 ENSMUSP00000060110 TRANSLATION protein_coding - CCDS35783.1 1 393.0 0.0 2.0 6.7 465.5 2.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000067773 Defb41 ENSMUST00000097817 ENSMUSP00000095426 TRANSLATION protein_coding - CCDS35521.1 1 65.0 0.0 1.0 8.0 30.0 0.0 2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067773 Defb41 ENSMUST00000088463 ENSMUSP00000085811 TRANSLATION protein_coding - CCDS48226.1 1 62.0 0.0 0.0 2.8 0.0 0.0 3,-2 0.142 - 0.771 MINOR ENSMUSG00000026288 Inpp5d ENSMUST00000165554 ENSMUSP00000128700 TRANSLATION protein_coding start/stop - 5 124.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026288 Inpp5d ENSMUST00000164592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026288 Inpp5d ENSMUST00000170300 ENSMUSP00000132384 TRANSLATION protein_coding - - 2 867.0 0.0 12.25 0.0 29.3 0.0 -4,-5 0.0088 26 0.0 MINOR ENSMUSG00000026288 Inpp5d ENSMUST00000169754 ENSMUSP00000127941 TRANSLATION protein_coding - CCDS35655.1 1 1191.0 0.0 15.5 1.5 86.1 0.0 -4,-6 1.0 36 9.0 PRINCIPAL:4 ENSMUSG00000026288 Inpp5d ENSMUST00000163548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026288 Inpp5d ENSMUST00000072999 ENSMUSP00000072763 TRANSLATION nonsense_mediated_decay - - 1 959.0 0.0 15.5 0.0 86.1 0.0 -4,-6 0.1235 27 -2.0 MINOR ENSMUSG00000026288 Inpp5d ENSMUST00000163576 ENSMUSP00000130336 TRANSLATION protein_coding stop - 3 35.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026288 Inpp5d ENSMUST00000042275 ENSMUSP00000044647 TRANSLATION protein_coding - CCDS48311.1 1 1190.0 0.0 15.5 1.5 86.1 0.0 -4,-6 0.9985 36 9.0 ALTERNATIVE:2 ENSMUSG00000026288 Inpp5d ENSMUST00000167032 ENSMUSP00000126569 TRANSLATION protein_coding - - 2 928.0 0.0 12.25 0.0 29.3 0.0 -4,-5 0.0111 27 0.0 MINOR ENSMUSG00000026288 Inpp5d ENSMUST00000168783 ENSMUSP00000131244 TRANSLATION protein_coding - CCDS48310.1 1 1130.0 0.0 15.5 0.0 86.1 0.0 -4,-6 0.5 35 8.0 ALTERNATIVE:2 ENSMUSG00000026288 Inpp5d ENSMUST00000163222 - NO_TRANSLATION retained_intron ENSMUSG00000056536 Pign ENSMUST00000186195 ENSMUSP00000139490 TRANSLATION protein_coding start - 3 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000056536 Pign ENSMUST00000190139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056536 Pign ENSMUST00000185209 - NO_TRANSLATION retained_intron ENSMUSG00000056536 Pign ENSMUST00000185983 - NO_TRANSLATION retained_intron ENSMUSG00000056536 Pign ENSMUST00000190945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056536 Pign ENSMUST00000188858 - NO_TRANSLATION retained_intron ENSMUSG00000056536 Pign ENSMUST00000070699 ENSMUSP00000069969 TRANSLATION protein_coding - CCDS15205.1 5 931.0 6.0 1.448 10.3 500.3 22.0 1,-3 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000056536 Pign ENSMUST00000187909 - NO_TRANSLATION retained_intron ENSMUSG00000056536 Pign ENSMUST00000191408 - NO_TRANSLATION retained_intron ENSMUSG00000056536 Pign ENSMUST00000187537 ENSMUSP00000140020 TRANSLATION protein_coding - - 5 826.0 6.0 1.448 0.0 330.6 19.0 1,-3 0.0553 7 12.0 MINOR ENSMUSG00000056536 Pign ENSMUST00000190811 ENSMUSP00000140844 TRANSLATION protein_coding - - 1 798.0 6.0 1.448 0.0 329.5 18.0 1,-3 0.0553 7 12.0 MINOR ENSMUSG00000056536 Pign ENSMUST00000186485 ENSMUSP00000139638 TRANSLATION protein_coding - CCDS15205.1 1 931.0 6.0 1.448 10.3 500.3 22.0 1,-3 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000026065 Slc9a4 ENSMUST00000193371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026065 Slc9a4 ENSMUST00000027233 ENSMUSP00000027233 TRANSLATION protein_coding - CCDS14913.1 1 797.0 0.0 4.85 7.0 428.4 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026065 Slc9a4 ENSMUST00000192454 - NO_TRANSLATION retained_intron ENSMUSG00000026065 Slc9a4 ENSMUST00000192849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033007 Asic4 ENSMUST00000037708 ENSMUSP00000045598 TRANSLATION protein_coding - CCDS15073.1 1 539.0 0.0 5.91 21.2 328.9 1.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000033007 Asic4 ENSMUST00000113577 ENSMUSP00000109207 TRANSLATION protein_coding - - 5 520.0 0.0 5.51 2.1 316.2 1.0 -4,-5 0.0795 4 10.656 MINOR ENSMUSG00000003134 Tbc1d8 ENSMUST00000192099 ENSMUSP00000141257 TRANSLATION nonsense_mediated_decay start - 3 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003134 Tbc1d8 ENSMUST00000192531 ENSMUSP00000142143 TRANSLATION nonsense_mediated_decay - - 5 156.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000003134 Tbc1d8 ENSMUST00000193823 ENSMUSP00000141750 TRANSLATION protein_coding - - 1 1006.0 3.0 3.32 0.0 299.2 0.0 -4,-7 0.1894 13 11.0 ALTERNATIVE:2 ENSMUSG00000003134 Tbc1d8 ENSMUST00000054462 ENSMUSP00000049967 TRANSLATION protein_coding - CCDS14905.1 1 1134.0 3.0 3.32 2.1 299.2 0.0 -4,-7 1.0 14 12.0 PRINCIPAL:2 ENSMUSG00000003134 Tbc1d8 ENSMUST00000195854 - NO_TRANSLATION retained_intron ENSMUSG00000026153 Fam135a ENSMUST00000186999 ENSMUSP00000140198 TRANSLATION protein_coding stop - 5 851.0 0.0 0.0 0.0 60.6 0.0 -4,-5 0.0171 6 -2.0 MINOR ENSMUSG00000026153 Fam135a ENSMUST00000187619 ENSMUSP00000139993 TRANSLATION protein_coding start - 5 271.0 8.0 0.0 0.0 153.5 0.0 -4,-5 0.0015 4 -2.0 MINOR ENSMUSG00000026153 Fam135a ENSMUST00000186331 ENSMUSP00000140947 TRANSLATION nonsense_mediated_decay start - 1 300.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.004 - -2.0 MINOR ENSMUSG00000026153 Fam135a ENSMUST00000187369 ENSMUSP00000140766 TRANSLATION protein_coding - - 5 1310.0 8.0 0.0 0.1 269.2 0.0 -4,-5 0.9284 10 8.0 PRINCIPAL:2 ENSMUSG00000026153 Fam135a ENSMUST00000027337 ENSMUSP00000027337 TRANSLATION protein_coding - CCDS14853.1 5 1506.0 8.0 0.0 0.1 269.2 0.0 -4,-5 0.5384 10 8.0 ALTERNATIVE:2 ENSMUSG00000026153 Fam135a ENSMUST00000185525 - NO_TRANSLATION retained_intron ENSMUSG00000026153 Fam135a ENSMUST00000188712 ENSMUSP00000139754 TRANSLATION nonsense_mediated_decay - - 5 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026153 Fam135a ENSMUST00000187752 ENSMUSP00000139633 TRANSLATION protein_coding - - 5 1293.0 8.0 0.0 0.0 269.2 0.0 -4,-5 0.4619 10 8.0 ALTERNATIVE:2 ENSMUSG00000026153 Fam135a ENSMUST00000185807 ENSMUSP00000140078 TRANSLATION protein_coding start/stop - 5 161.0 3.0 0.0 0.0 56.5 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000025933 Tmem14a ENSMUST00000027065 ENSMUSP00000027065 TRANSLATION protein_coding - CCDS35523.1 1 99.0 0.0 2.6 15.9 89.3 3.0 -3,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000025933 Tmem14a ENSMUST00000027064 ENSMUSP00000027064 TRANSLATION protein_coding - CCDS69867.1 1 145.0 0.0 2.5 0.0 82.4 2.0 -3,-5 0.0724 - 11.31 MINOR ENSMUSG00000042772 Smg7 ENSMUST00000073441 ENSMUSP00000073144 TRANSLATION protein_coding - CCDS35740.1 1 1134.0 0.0 9.59 7.6 285.9 0.0 -4,-5 1.0 19 8.0 PRINCIPAL:3 ENSMUSG00000042772 Smg7 ENSMUST00000111836 ENSMUSP00000107467 TRANSLATION protein_coding - CCDS48395.1 1 1138.0 0.0 9.59 7.6 285.9 0.0 -4,-5 0.9513 18 8.0 ALTERNATIVE:1 ENSMUSG00000042772 Smg7 ENSMUST00000188937 - NO_TRANSLATION retained_intron ENSMUSG00000042772 Smg7 ENSMUST00000186900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042772 Smg7 ENSMUST00000186692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042772 Smg7 ENSMUST00000043560 ENSMUSP00000041241 TRANSLATION protein_coding - CCDS48394.1 1 1146.0 0.0 9.26 0.8 285.9 0.0 -4,-5 0.4854 18 5.34 MINOR ENSMUSG00000042793 Lgr6 ENSMUST00000044828 ENSMUSP00000035444 TRANSLATION protein_coding - CCDS15314.1 1 967.0 0.0 11.98 4.2 199.5 7.0 3,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000042793 Lgr6 ENSMUST00000137968 ENSMUSP00000122334 TRANSLATION protein_coding - - 1 690.0 0.0 5.855 0.0 58.5 7.0 -4,-6 0.0058 1 0.0 MINOR ENSMUSG00000042793 Lgr6 ENSMUST00000139369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062939 Stat4 ENSMUST00000168302 ENSMUSP00000130713 TRANSLATION protein_coding - CCDS14943.1 1 748.0 0.0 14.97875 20.7 600.2 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000062939 Stat4 ENSMUST00000027277 ENSMUSP00000027277 TRANSLATION protein_coding - CCDS14943.1 1 748.0 0.0 14.97875 20.7 600.2 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000062939 Stat4 ENSMUST00000187053 - NO_TRANSLATION retained_intron ENSMUSG00000062939 Stat4 ENSMUST00000187554 - NO_TRANSLATION retained_intron ENSMUSG00000026100 Mstn ENSMUST00000191197 ENSMUSP00000140249 TRANSLATION protein_coding - - 5 189.0 0.0 0.9 0.0 66.2 0.0 -1,-5 0.0 2 1.86 MINOR ENSMUSG00000026100 Mstn ENSMUST00000027269 ENSMUSP00000027269 TRANSLATION protein_coding - CCDS14950.1 1 376.0 0.0 2.9 18.2 203.0 0.0 -1,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000036975 Tmem177 ENSMUST00000037906 ENSMUSP00000042416 TRANSLATION protein_coding - CCDS15228.1 1 311.0 0.0 1.0 11.0 0.0 0.0 -4,0 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000073490 Ifi207 ENSMUST00000042610 ENSMUSP00000048129 TRANSLATION protein_coding - CCDS56659.1 5 978.0 0.0 3.33 0.0 277.6 0.0 -4,-5 0.8306 10 8.0 ALTERNATIVE:2 ENSMUSG00000073490 Ifi207 ENSMUST00000127730 ENSMUSP00000119350 TRANSLATION protein_coding - - 2 971.0 0.0 3.33 0.0 277.6 0.0 -4,-5 0.8712 10 8.0 PRINCIPAL:4 ENSMUSG00000006010 Odr4 ENSMUST00000094477 ENSMUSP00000092050 TRANSLATION nonsense_mediated_decay - - 5 339.0 0.0 0.0 0.0 337.0 0.0 -4,-5 0.0004 7 -2.0 MINOR ENSMUSG00000006010 Odr4 ENSMUST00000097546 ENSMUSP00000095152 TRANSLATION protein_coding - - 5 425.0 0.0 0.0 1.0 370.8 1.0 -4,-5 0.0297 5 4.392 MINOR ENSMUSG00000006010 Odr4 ENSMUST00000150615 - NO_TRANSLATION retained_intron ENSMUSG00000006010 Odr4 ENSMUST00000097547 ENSMUSP00000095153 TRANSLATION protein_coding - CCDS35733.1 5 415.0 0.0 0.0 0.7 349.7 1.0 -4,-5 0.0422 5 3.126 MINOR ENSMUSG00000006010 Odr4 ENSMUST00000148389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006010 Odr4 ENSMUST00000006167 ENSMUSP00000006167 TRANSLATION protein_coding - - 5 425.0 0.0 0.0 1.0 370.8 1.0 -4,-5 0.0297 5 4.392 MINOR ENSMUSG00000006010 Odr4 ENSMUST00000132809 - NO_TRANSLATION retained_intron ENSMUSG00000006010 Odr4 ENSMUST00000140112 - NO_TRANSLATION retained_intron ENSMUSG00000006010 Odr4 ENSMUST00000111913 ENSMUSP00000107544 TRANSLATION protein_coding - CCDS15355.2 5 447.0 0.0 0.0 12.5 397.6 1.0 -4,-5 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000079180 Mptx2 ENSMUST00000111224 ENSMUSP00000106855 TRANSLATION protein_coding - CCDS56658.1 5 219.0 0.0 1.0 8.7 241.7 0.0 4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000050534 Htr5b ENSMUST00000055884 ENSMUSP00000057212 TRANSLATION protein_coding - CCDS15239.1 1 370.0 0.0 0.9 4.6 222.6 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026421 Csrp1 ENSMUST00000097561 ENSMUSP00000095169 TRANSLATION protein_coding - CCDS15320.1 1 193.0 16.0 4.75 36.9 108.1 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000026421 Csrp1 ENSMUST00000027677 ENSMUSP00000027677 TRANSLATION protein_coding - CCDS15320.1 1 193.0 16.0 4.75 36.9 108.1 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000015314 Slamf6 ENSMUST00000194561 ENSMUSP00000141944 TRANSLATION protein_coding - CCDS83639.1 1 327.0 0.0 3.3 0.0 0.0 2.0 -3,-4 0.5407 3 6.0 ALTERNATIVE:2 ENSMUSG00000015314 Slamf6 ENSMUST00000194182 ENSMUSP00000142242 TRANSLATION protein_coding stop - 3 55.0 0.0 0.3 0.0 0.0 0.0 -4,-6 0.0115 - -2.0 MINOR ENSMUSG00000015314 Slamf6 ENSMUST00000171330 ENSMUSP00000130610 TRANSLATION protein_coding - CCDS15504.1 1 331.0 0.0 3.3 0.0 0.0 2.0 -3,-4 1.0 4 6.0 PRINCIPAL:2 ENSMUSG00000015314 Slamf6 ENSMUST00000195656 ENSMUSP00000141448 TRANSLATION protein_coding - CCDS83638.1 1 351.0 0.0 3.3 0.0 0.0 2.0 -3,-4 0.3588 5 6.0 ALTERNATIVE:2 ENSMUSG00000015314 Slamf6 ENSMUST00000193311 - NO_TRANSLATION retained_intron ENSMUSG00000015314 Slamf6 ENSMUST00000195206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015314 Slamf6 ENSMUST00000194924 - NO_TRANSLATION retained_intron ENSMUSG00000037529 Prss40 ENSMUST00000115071 ENSMUSP00000110723 TRANSLATION nonsense_mediated_decay - - 1 133.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000037529 Prss40 ENSMUST00000047840 ENSMUSP00000045118 TRANSLATION protein_coding - CCDS14870.1 1 365.0 6.0 3.23 0.0 193.1 0.0 -1,-3 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000037529 Prss40 ENSMUST00000190790 ENSMUSP00000140885 TRANSLATION protein_coding start - 1 147.0 1.0 1.43 0.0 77.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033813 Tcea1 ENSMUST00000165720 ENSMUSP00000129157 TRANSLATION protein_coding - CCDS48212.1 5 312.0 4.0 6.0 0.0 256.1 0.0 -4,-7 0.0922 11 14.5 MINOR ENSMUSG00000033813 Tcea1 ENSMUST00000081551 ENSMUSP00000080266 TRANSLATION protein_coding - CCDS35505.1 1 301.0 4.0 6.75 19.6 256.1 0.0 -4,-5 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000094651 Gal3st2 ENSMUST00000094663 ENSMUSP00000092250 TRANSLATION protein_coding - CCDS15197.1 1 396.0 0.0 2.095 3.1 494.0 0.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000094651 Gal3st2 ENSMUST00000187896 ENSMUSP00000140697 TRANSLATION protein_coding stop - 5 67.0 0.0 0.8 0.0 92.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000094651 Gal3st2 ENSMUST00000190710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062510 Nsl1 ENSMUST00000078259 ENSMUSP00000077380 TRANSLATION protein_coding - CCDS15614.1 1 281.0 0.0 4.6 0.0 92.2 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000062510 Nsl1 ENSMUST00000139340 ENSMUSP00000115289 TRANSLATION protein_coding - - 1 174.0 0.0 3.25 0.0 67.7 0.0 -4,-5 0.0 - 7.704 MINOR ENSMUSG00000062510 Nsl1 ENSMUST00000076952 ENSMUSP00000076220 TRANSLATION protein_coding stop - 3 193.0 0.0 3.25 0.0 67.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038421 Fcrla ENSMUST00000159171 ENSMUSP00000124853 TRANSLATION protein_coding - CCDS48439.1 1 352.0 0.0 6.305 0.0 72.7 0.0 0,-4 1.0 7 8.0 PRINCIPAL:2 ENSMUSG00000038421 Fcrla ENSMUST00000162887 ENSMUSP00000124469 TRANSLATION protein_coding stop - 2 79.0 0.0 1.875 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038421 Fcrla ENSMUST00000159149 ENSMUSP00000125074 TRANSLATION nonsense_mediated_decay start - 5 177.0 0.0 3.475 0.0 39.6 0.0 -4,-5 0.0015 3 -2.0 MINOR ENSMUSG00000038421 Fcrla ENSMUST00000046322 ENSMUSP00000036380 TRANSLATION protein_coding - CCDS48440.1 1 353.0 0.0 6.305 0.4 72.7 0.0 0,-4 0.6581 7 8.0 ALTERNATIVE:2 ENSMUSG00000038421 Fcrla ENSMUST00000162136 ENSMUSP00000124859 TRANSLATION protein_coding stop - 3 216.0 0.0 4.475 0.0 0.0 0.0 0,-4 0.0057 5 -2.0 MINOR ENSMUSG00000038421 Fcrla ENSMUST00000161050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058665 En1 ENSMUST00000079721 ENSMUSP00000078659 TRANSLATION protein_coding - CCDS15235.1 1 401.0 0.0 1.0 0.0 141.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043015 Nemp2 ENSMUST00000191076 - NO_TRANSLATION retained_intron ENSMUSG00000043015 Nemp2 ENSMUST00000165859 ENSMUSP00000129351 TRANSLATION protein_coding - CCDS48257.1 5 421.0 0.0 0.0 0.4 284.2 9.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043015 Nemp2 ENSMUST00000186903 - NO_TRANSLATION retained_intron ENSMUSG00000043015 Nemp2 ENSMUST00000190452 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043015 Nemp2 ENSMUST00000188507 ENSMUSP00000140152 TRANSLATION nonsense_mediated_decay - - 1 235.0 0.0 0.0 0.1 72.5 6.0 3,-2 0.0078 - -2.0 MINOR ENSMUSG00000043015 Nemp2 ENSMUST00000185483 ENSMUSP00000139513 TRANSLATION nonsense_mediated_decay - - 1 209.0 0.0 0.0 0.0 70.6 5.0 3,-2 0.0078 - -2.0 MINOR ENSMUSG00000043015 Nemp2 ENSMUST00000190108 - NO_TRANSLATION retained_intron ENSMUSG00000043015 Nemp2 ENSMUST00000185790 ENSMUSP00000140351 TRANSLATION nonsense_mediated_decay start - 1 89.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026532 Spta1 ENSMUST00000027817 ENSMUSP00000027817 TRANSLATION protein_coding - CCDS35795.1 1 2415.0 0.0 26.724 0.8 1553.3 0.0 -4,-5 1.0 102 12.0 PRINCIPAL:1 ENSMUSG00000026532 Spta1 ENSMUST00000156092 - NO_TRANSLATION retained_intron ENSMUSG00000079457 Gm7609 ENSMUST00000113402 ENSMUSP00000159200 TRANSLATION protein_coding - - 1 296.0 0.0 1.0 0.1 0.0 4.0 -4,-7 0.698 - 6.0 PRINCIPAL:1 ENSMUSG00000079457 Gm7609 ENSMUST00000161424 ENSMUSP00000159243 TRANSLATION protein_coding - - - 296.0 0.0 1.0 0.1 0.0 4.0 -4,-7 0.698 - 6.0 PRINCIPAL:1 ENSMUSG00000033257 Ttll4 ENSMUST00000129890 ENSMUSP00000119964 TRANSLATION protein_coding stop - 3 103.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033257 Ttll4 ENSMUST00000141119 ENSMUSP00000116733 TRANSLATION protein_coding stop - 3 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033257 Ttll4 ENSMUST00000153636 - NO_TRANSLATION retained_intron ENSMUSG00000033257 Ttll4 ENSMUST00000143790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033257 Ttll4 ENSMUST00000143925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033257 Ttll4 ENSMUST00000128891 - NO_TRANSLATION retained_intron ENSMUSG00000033257 Ttll4 ENSMUST00000140591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033257 Ttll4 ENSMUST00000042125 ENSMUSP00000037406 TRANSLATION protein_coding - CCDS15053.1 1 1193.0 21.0 8.475 0.3 347.4 0.0 -4,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000033257 Ttll4 ENSMUST00000155753 - NO_TRANSLATION retained_intron ENSMUSG00000033257 Ttll4 ENSMUST00000145132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033257 Ttll4 ENSMUST00000113678 ENSMUSP00000109308 TRANSLATION protein_coding - - 5 1129.0 17.0 7.675 0.0 266.9 0.0 -4,-2 0.0228 3 8.904 MINOR ENSMUSG00000042115 Klhdc8a ENSMUST00000046071 ENSMUSP00000038297 TRANSLATION protein_coding - CCDS35706.1 1 350.0 0.0 5.0 29.7 135.8 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000044816 D630023F18Rik ENSMUST00000153330 ENSMUSP00000115574 TRANSLATION nonsense_mediated_decay - - 3 75.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0157 - -2.0 MINOR ENSMUSG00000044816 D630023F18Rik ENSMUST00000050047 ENSMUSP00000056196 TRANSLATION protein_coding - CCDS15015.1 1 231.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.8724 1 0.0 PRINCIPAL:2 ENSMUSG00000044816 D630023F18Rik ENSMUST00000148020 ENSMUSP00000120090 TRANSLATION protein_coding - CCDS69896.1 1 196.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.1879 1 0.0 ALTERNATIVE:2 ENSMUSG00000038936 Sccpdh ENSMUST00000040538 ENSMUSP00000040956 TRANSLATION protein_coding - CCDS15563.1 1 429.0 22.0 10.91 16.9 117.9 3.0 -4,-6 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000038936 Sccpdh ENSMUST00000144480 ENSMUSP00000121285 TRANSLATION protein_coding start - 3 170.0 0.0 4.83 0.0 28.4 3.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000038936 Sccpdh ENSMUST00000134287 ENSMUSP00000136880 TRANSLATION nonsense_mediated_decay - - 5 130.0 16.0 2.75 0.0 78.6 0.0 -4,-6 0.0009 3 -2.0 MINOR ENSMUSG00000038936 Sccpdh ENSMUST00000143936 ENSMUSP00000115769 TRANSLATION protein_coding start - 3 120.0 0.0 3.25 0.0 0.0 3.0 -4,-7 0.0024 1 -2.0 MINOR ENSMUSG00000038936 Sccpdh ENSMUST00000192611 - NO_TRANSLATION retained_intron ENSMUSG00000038936 Sccpdh ENSMUST00000131039 - NO_TRANSLATION retained_intron ENSMUSG00000026074 Map4k4 ENSMUST00000193682 ENSMUSP00000141862 TRANSLATION protein_coding - CCDS78576.1 1 1221.0 21.0 15.0135 4.6 409.9 0.0 -4,-5 0.7211 18 19.05 MINOR ENSMUSG00000026074 Map4k4 ENSMUST00000168431 ENSMUSP00000129796 TRANSLATION protein_coding - - 5 1238.0 21.0 15.0135 11.3 409.9 0.0 -4,-5 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000026074 Map4k4 ENSMUST00000192355 ENSMUSP00000141956 TRANSLATION protein_coding start/stop - 3 237.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 4 -2.0 MINOR ENSMUSG00000026074 Map4k4 ENSMUST00000193661 - NO_TRANSLATION retained_intron ENSMUSG00000026074 Map4k4 ENSMUST00000194163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026074 Map4k4 ENSMUST00000195636 ENSMUSP00000141613 TRANSLATION protein_coding - - 5 1272.0 21.0 15.0135 4.6 409.9 0.0 -4,-5 0.5044 17 19.05 MINOR ENSMUSG00000026074 Map4k4 ENSMUST00000191865 ENSMUSP00000141573 TRANSLATION protein_coding start/stop - 3 236.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 3 -2.0 MINOR ENSMUSG00000026074 Map4k4 ENSMUST00000195860 ENSMUSP00000141400 TRANSLATION protein_coding - CCDS78573.1 1 1288.0 21.0 15.0135 6.6 409.9 0.0 -4,-5 0.945 18 19.632 MINOR ENSMUSG00000026074 Map4k4 ENSMUST00000191761 ENSMUSP00000141332 TRANSLATION protein_coding stop - 2 404.0 21.0 8.1485 0.0 212.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026074 Map4k4 ENSMUST00000195259 ENSMUSP00000142056 TRANSLATION protein_coding - CCDS78575.1 1 1208.0 21.0 15.0135 5.3 409.9 0.0 -4,-5 0.8865 16 19.251 MINOR ENSMUSG00000026074 Map4k4 ENSMUST00000191657 - NO_TRANSLATION retained_intron ENSMUSG00000026074 Map4k4 ENSMUST00000192509 ENSMUSP00000141665 TRANSLATION protein_coding - CCDS35546.1 2 1234.0 21.0 15.0135 4.6 409.9 0.0 -4,-5 0.7596 18 19.05 MINOR ENSMUSG00000026074 Map4k4 ENSMUST00000193514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026074 Map4k4 ENSMUST00000195356 - NO_TRANSLATION retained_intron ENSMUSG00000026074 Map4k4 ENSMUST00000163854 ENSMUSP00000126961 TRANSLATION protein_coding - - 5 1288.0 21.0 15.0135 6.6 409.9 0.0 -4,-5 0.8005 17 19.632 MINOR ENSMUSG00000026074 Map4k4 ENSMUST00000192884 - NO_TRANSLATION retained_intron ENSMUSG00000026074 Map4k4 ENSMUST00000192194 - NO_TRANSLATION retained_intron ENSMUSG00000026074 Map4k4 ENSMUST00000191964 ENSMUSP00000141235 TRANSLATION protein_coding start/stop - 3 209.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 4 -2.0 MINOR ENSMUSG00000055980 Irs1 ENSMUST00000069799 ENSMUSP00000063795 TRANSLATION protein_coding - CCDS15096.1 1 1231.0 0.0 0.16 0.3 145.1 0.0 -4,-6 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000047021 Cfap65 ENSMUST00000094844 ENSMUSP00000092440 TRANSLATION protein_coding - CCDS15060.1 1 1847.0 0.0 1.32 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047021 Cfap65 ENSMUST00000139950 - NO_TRANSLATION retained_intron ENSMUSG00000047021 Cfap65 ENSMUST00000130489 - NO_TRANSLATION retained_intron ENSMUSG00000025983 Ccdc150 ENSMUST00000160472 ENSMUSP00000125195 TRANSLATION nonsense_mediated_decay - - 1 580.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.2284 - -2.0 MINOR ENSMUSG00000025983 Ccdc150 ENSMUST00000163072 ENSMUSP00000158733 TRANSLATION protein_coding - - 5 582.0 0.0 0.0 2.2 0.0 0.0 -4,0 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000025983 Ccdc150 ENSMUST00000027128 ENSMUSP00000027128 TRANSLATION protein_coding - CCDS35564.1 1 1110.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.3705 - 0.0 ALTERNATIVE:2 ENSMUSG00000025983 Ccdc150 ENSMUST00000161988 - NO_TRANSLATION retained_intron ENSMUSG00000025983 Ccdc150 ENSMUST00000159682 - NO_TRANSLATION retained_intron ENSMUSG00000045259 Klhdc9 ENSMUST00000061878 ENSMUSP00000056212 TRANSLATION protein_coding - CCDS35776.1 1 350.0 0.0 4.0 4.6 0.0 0.0 -4,0 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000046994 Mars2 ENSMUST00000061334 ENSMUSP00000049770 TRANSLATION protein_coding - CCDS14963.1 - 586.0 23.0 1.0 3.7 362.5 0.0 -4,0 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000026260 Ndufa10 ENSMUST00000187098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026260 Ndufa10 ENSMUST00000185466 - NO_TRANSLATION retained_intron ENSMUSG00000026260 Ndufa10 ENSMUST00000185251 ENSMUSP00000140457 TRANSLATION protein_coding stop - 3 89.0 0.0 2.25 0.0 31.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026260 Ndufa10 ENSMUST00000153897 - NO_TRANSLATION retained_intron ENSMUSG00000026260 Ndufa10 ENSMUST00000187141 - NO_TRANSLATION retained_intron ENSMUSG00000026260 Ndufa10 ENSMUST00000027478 ENSMUSP00000027478 TRANSLATION protein_coding - CCDS15167.1 1 355.0 10.0 8.6 15.9 122.6 0.0 -2,2 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000026260 Ndufa10 ENSMUST00000189503 ENSMUSP00000140576 TRANSLATION nonsense_mediated_decay - - 5 63.0 0.0 0.1 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000026260 Ndufa10 ENSMUST00000189582 - NO_TRANSLATION retained_intron ENSMUSG00000026228 Htr2b ENSMUST00000155077 ENSMUSP00000116273 TRANSLATION protein_coding start/stop - 1 173.0 0.0 3.25 0.0 129.7 5.0 -3,-5 0.0046 - -2.0 MINOR ENSMUSG00000026228 Htr2b ENSMUST00000027431 ENSMUSP00000027431 TRANSLATION protein_coding - CCDS35644.1 1 479.0 0.0 4.08 7.6 215.1 9.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026525 Opn3 ENSMUST00000027809 ENSMUSP00000027809 TRANSLATION protein_coding - CCDS15549.1 1 400.0 13.0 3.2 11.7 120.7 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000055013 Agap1 ENSMUST00000027521 ENSMUSP00000027521 TRANSLATION protein_coding - CCDS15149.1 1 857.0 19.0 9.82 10.4 234.9 0.0 -4,-6 0.9297 11 17.0 ALTERNATIVE:1 ENSMUSG00000055013 Agap1 ENSMUST00000190096 ENSMUSP00000140599 TRANSLATION protein_coding - CCDS15148.1 1 804.0 19.0 9.82 10.4 234.9 0.0 -4,-6 1.0 12 17.0 PRINCIPAL:3 ENSMUSG00000055013 Agap1 ENSMUST00000074945 ENSMUSP00000074478 TRANSLATION protein_coding - - 5 1056.0 19.0 9.82 0.0 233.3 0.0 -4,-5 0.1307 14 14.0 MINOR ENSMUSG00000055013 Agap1 ENSMUST00000212924 ENSMUSP00000148317 TRANSLATION protein_coding start/stop - 5 132.0 0.0 1.0 0.0 30.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055013 Agap1 ENSMUST00000185417 - NO_TRANSLATION retained_intron ENSMUSG00000050777 Tmem37 ENSMUST00000056089 ENSMUSP00000050862 TRANSLATION protein_coding - CCDS15229.1 1 211.0 0.0 1.0 0.1 323.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000008136 Fhl2 ENSMUST00000008280 ENSMUSP00000008280 TRANSLATION protein_coding - CCDS14922.1 1 279.0 35.0 5.5 36.9 169.8 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000008136 Fhl2 ENSMUST00000185893 ENSMUSP00000141170 TRANSLATION protein_coding - CCDS14922.1 1 279.0 35.0 5.5 36.9 169.8 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000008136 Fhl2 ENSMUST00000187357 ENSMUSP00000140420 TRANSLATION protein_coding stop - 2 21.0 2.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025967 Eef1b2 ENSMUST00000126469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025967 Eef1b2 ENSMUST00000174890 ENSMUSP00000133545 TRANSLATION nonsense_mediated_decay - - 5 68.0 0.0 1.91 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025967 Eef1b2 ENSMUST00000148553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025967 Eef1b2 ENSMUST00000188524 ENSMUSP00000140895 TRANSLATION protein_coding - - 3 184.0 0.0 4.51 1.2 176.4 0.0 -4,-5 0.0654 5 9.864 MINOR ENSMUSG00000025967 Eef1b2 ENSMUST00000142062 ENSMUSP00000137881 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025967 Eef1b2 ENSMUST00000027108 ENSMUSP00000137835 TRANSLATION nonsense_mediated_decay - - 3 48.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025967 Eef1b2 ENSMUST00000129339 ENSMUSP00000116492 TRANSLATION protein_coding - CCDS14997.1 1 225.0 0.0 5.59 33.2 176.4 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000025967 Eef1b2 ENSMUST00000126795 ENSMUSP00000134341 TRANSLATION nonsense_mediated_decay start - 5 94.0 0.0 1.91 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025967 Eef1b2 ENSMUST00000135877 ENSMUSP00000137671 TRANSLATION nonsense_mediated_decay - - 3 68.0 0.0 0.33 0.0 0.0 0.0 -2,-3 0.0 - -2.0 MINOR ENSMUSG00000026610 Esrrg ENSMUST00000152927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026610 Esrrg ENSMUST00000110939 ENSMUSP00000106564 TRANSLATION protein_coding - CCDS56666.1 1 435.0 26.0 5.6 10.9 218.1 0.0 -4,-5 0.8536 7 19.972 MINOR ENSMUSG00000026610 Esrrg ENSMUST00000127489 ENSMUSP00000119286 TRANSLATION protein_coding stop - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026610 Esrrg ENSMUST00000027906 ENSMUSP00000027906 TRANSLATION protein_coding - CCDS15606.1 1 458.0 26.0 5.6 21.1 218.1 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000026610 Esrrg ENSMUST00000110938 ENSMUSP00000106563 TRANSLATION protein_coding - CCDS56666.1 1 435.0 26.0 5.6 10.9 218.1 0.0 -4,-5 0.8536 7 19.972 MINOR ENSMUSG00000073491 Ifi213 ENSMUST00000180215 ENSMUSP00000136238 TRANSLATION protein_coding - CCDS48450.1 3 135.0 0.0 1.0 0.0 47.6 0.0 -4,-6 0.1624 - 10.284 MINOR ENSMUSG00000073491 Ifi213 ENSMUST00000179648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073491 Ifi213 ENSMUST00000178186 - NO_TRANSLATION retained_intron ENSMUSG00000073491 Ifi213 ENSMUST00000150649 ENSMUSP00000117222 TRANSLATION protein_coding - - 5 586.0 0.0 1.4 0.0 47.6 0.0 -4,-6 0.7956 - 12.0 PRINCIPAL:1 ENSMUSG00000073491 Ifi213 ENSMUST00000097462 ENSMUSP00000095070 TRANSLATION protein_coding - CCDS48450.1 1 135.0 0.0 1.0 0.0 47.6 0.0 -4,-6 0.1624 - 10.284 MINOR ENSMUSG00000070031 Sp140 ENSMUST00000080204 ENSMUSP00000079095 TRANSLATION protein_coding - CCDS35638.1 1 534.0 8.0 9.6 0.0 259.2 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000070031 Sp140 ENSMUST00000161497 ENSMUSP00000125026 TRANSLATION protein_coding start - 5 184.0 8.0 4.1 0.0 59.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000070031 Sp140 ENSMUST00000113385 ENSMUSP00000109012 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000070031 Sp140 ENSMUST00000160119 - NO_TRANSLATION retained_intron ENSMUSG00000070031 Sp140 ENSMUST00000162925 ENSMUSP00000123756 TRANSLATION protein_coding start - 5 159.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000070031 Sp140 ENSMUST00000159234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070738 Dgkd ENSMUST00000027517 ENSMUSP00000027517 TRANSLATION protein_coding - CCDS48312.1 5 1220.0 12.0 5.975 0.1 449.8 0.0 -4,-5 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000070738 Dgkd ENSMUST00000190061 ENSMUSP00000139658 TRANSLATION protein_coding start - 5 364.0 0.0 0.0 0.0 84.7 0.0 -4,-7 0.0008 5 -2.0 MINOR ENSMUSG00000070738 Dgkd ENSMUST00000191589 - NO_TRANSLATION retained_intron ENSMUSG00000070738 Dgkd ENSMUST00000190243 - NO_TRANSLATION retained_intron ENSMUSG00000070738 Dgkd ENSMUST00000185260 ENSMUSP00000140070 TRANSLATION protein_coding start/stop - 3 218.0 0.0 0.0 0.0 93.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000070738 Dgkd ENSMUST00000189726 - NO_TRANSLATION retained_intron ENSMUSG00000070738 Dgkd ENSMUST00000189448 ENSMUSP00000139626 TRANSLATION protein_coding start - 3 197.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000004110 Cacna1e ENSMUST00000226546 ENSMUSP00000153897 TRANSLATION protein_coding start/stop - - 110.0 0.0 3.0 0.0 123.9 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000004110 Cacna1e ENSMUST00000238369 ENSMUSP00000158720 TRANSLATION protein_coding stop - - 585.0 0.0 6.03 0.0 221.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000004110 Cacna1e ENSMUST00000188321 - NO_TRANSLATION retained_intron ENSMUSG00000004110 Cacna1e ENSMUST00000188965 - NO_TRANSLATION retained_intron ENSMUSG00000004110 Cacna1e ENSMUST00000186256 - NO_TRANSLATION retained_intron ENSMUSG00000004110 Cacna1e ENSMUST00000188384 - NO_TRANSLATION retained_intron ENSMUSG00000004110 Cacna1e ENSMUST00000187541 ENSMUSP00000140937 TRANSLATION protein_coding - CCDS78710.1 1 2273.0 0.0 25.495 4.5 1049.7 0.0 -4,-6 1.0 34 14.0 PRINCIPAL:1 ENSMUSG00000004110 Cacna1e ENSMUST00000211821 ENSMUSP00000148507 TRANSLATION protein_coding - - 5 2254.0 0.0 24.695 0.0 1017.1 0.0 -4,-7 0.244 33 8.442 MINOR ENSMUSG00000033701 Acbd6 ENSMUST00000080138 ENSMUSP00000079035 TRANSLATION protein_coding - CCDS48397.1 1 137.0 7.0 2.6589 0.0 86.2 0.0 -4,-5 0.012 2 8.226 MINOR ENSMUSG00000033701 Acbd6 ENSMUST00000192730 ENSMUSP00000141762 TRANSLATION nonsense_mediated_decay start - 3 37.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033701 Acbd6 ENSMUST00000194476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033701 Acbd6 ENSMUST00000035560 ENSMUSP00000049124 TRANSLATION protein_coding - CCDS15385.1 1 282.0 7.0 5.955 13.2 149.1 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000033701 Acbd6 ENSMUST00000097529 ENSMUSP00000095136 TRANSLATION protein_coding - CCDS48398.1 1 139.0 7.0 2.748 0.0 86.2 0.0 -4,-5 0.0018 2 8.226 MINOR ENSMUSG00000033701 Acbd6 ENSMUST00000159339 - NO_TRANSLATION retained_intron ENSMUSG00000026023 Cdk15 ENSMUST00000162487 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026023 Cdk15 ENSMUST00000162906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026023 Cdk15 ENSMUST00000114248 ENSMUSP00000109886 TRANSLATION protein_coding - CCDS48273.1 1 433.0 18.0 7.305 11.6 228.1 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:4 ENSMUSG00000026023 Cdk15 ENSMUST00000160662 ENSMUSP00000124680 TRANSLATION protein_coding - - 5 435.0 18.0 7.305 11.6 228.1 0.0 -4,-6 0.8282 - 15.0 ALTERNATIVE:1 ENSMUSG00000040918 Slc19a2 ENSMUST00000169394 ENSMUSP00000131327 TRANSLATION protein_coding - - 5 297.0 0.0 2.38 2.1 263.2 9.0 -4,0 0.0414 1 5.1 MINOR ENSMUSG00000040918 Slc19a2 ENSMUST00000159230 ENSMUSP00000123870 TRANSLATION protein_coding - CCDS69968.1 1 460.0 0.0 2.98 0.0 564.8 14.0 -4,0 0.1611 1 10.476 MINOR ENSMUSG00000040918 Slc19a2 ENSMUST00000044021 ENSMUSP00000037561 TRANSLATION protein_coding - CCDS15433.1 1 498.0 0.0 1.98 11.8 590.2 14.0 -4,0 1.0 1 12.984 PRINCIPAL:1 ENSMUSG00000040918 Slc19a2 ENSMUST00000160773 - NO_TRANSLATION retained_intron ENSMUSG00000026226 Spata3 ENSMUST00000159876 ENSMUSP00000124671 TRANSLATION protein_coding - CCDS35643.1 5 193.0 0.0 0.0 1.4 307.8 0.0 -4,-2 0.5447 4 3.0 ALTERNATIVE:2 ENSMUSG00000026226 Spata3 ENSMUST00000130504 ENSMUSP00000116903 TRANSLATION protein_coding - CCDS15116.1 1 192.0 0.0 0.0 1.4 310.4 0.0 -4,-2 1.0 3 3.0 PRINCIPAL:2 ENSMUSG00000026226 Spata3 ENSMUST00000152501 ENSMUSP00000123194 TRANSLATION protein_coding - CCDS48301.1 1 170.0 0.0 0.0 0.0 249.5 0.0 -4,-2 0.045 3 0.0 MINOR ENSMUSG00000026226 Spata3 ENSMUST00000153247 ENSMUSP00000117650 TRANSLATION protein_coding - - 1 138.0 0.0 0.0 0.0 93.4 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000026226 Spata3 ENSMUST00000125083 ENSMUSP00000120768 TRANSLATION protein_coding - - 1 89.0 0.0 0.0 0.0 81.8 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000026226 Spata3 ENSMUST00000052854 ENSMUSP00000050509 TRANSLATION protein_coding - CCDS35643.1 1 193.0 0.0 0.0 1.4 307.8 0.0 -4,-2 0.5447 4 3.0 ALTERNATIVE:2 ENSMUSG00000026226 Spata3 ENSMUST00000149469 ENSMUSP00000154290 TRANSLATION protein_coding - - 5 333.0 0.0 0.0 0.0 222.4 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000026226 Spata3 ENSMUST00000113344 ENSMUSP00000108971 TRANSLATION protein_coding - CCDS15116.1 1 192.0 0.0 0.0 1.4 310.4 0.0 -4,-2 1.0 3 3.0 PRINCIPAL:2 ENSMUSG00000026226 Spata3 ENSMUST00000129169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026226 Spata3 ENSMUST00000135440 ENSMUSP00000123587 TRANSLATION protein_coding - - 1 171.0 0.0 0.0 0.0 246.9 0.0 -4,-2 0.0009 4 0.0 MINOR ENSMUSG00000026226 Spata3 ENSMUST00000131151 ENSMUSP00000123844 TRANSLATION protein_coding start - 3 174.0 0.0 0.0 0.0 271.9 0.0 -4,-5 0.0055 3 -2.0 MINOR ENSMUSG00000046062 Ppp1r15b ENSMUST00000122956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046062 Ppp1r15b ENSMUST00000052529 ENSMUSP00000057062 TRANSLATION protein_coding - CCDS15291.1 1 697.0 0.0 1.0 0.0 1174.0 0.0 -4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000026012 Cd28 ENSMUST00000153207 - NO_TRANSLATION retained_intron ENSMUSG00000026012 Cd28 ENSMUST00000132833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026012 Cd28 ENSMUST00000027165 ENSMUSP00000027165 TRANSLATION protein_coding - CCDS14992.1 1 218.0 0.0 2.58 6.8 43.1 0.0 -1,-4 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000026384 Ptpn4 ENSMUST00000164086 ENSMUSP00000127998 TRANSLATION protein_coding start/stop - 3 133.0 0.0 2.895 0.0 70.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000026384 Ptpn4 ENSMUST00000163179 ENSMUSP00000130841 TRANSLATION nonsense_mediated_decay start - 5 36.0 0.0 0.665 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026384 Ptpn4 ENSMUST00000064091 ENSMUSP00000067614 TRANSLATION protein_coding - CCDS15227.1 5 926.0 11.0 18.265 23.0 636.8 0.0 -4,0 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000026384 Ptpn4 ENSMUST00000168303 ENSMUSP00000129521 TRANSLATION protein_coding stop - 5 91.0 0.0 1.73 0.0 0.0 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000026384 Ptpn4 ENSMUST00000166624 ENSMUSP00000126216 TRANSLATION nonsense_mediated_decay start - 1 72.0 0.0 1.13 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026384 Ptpn4 ENSMUST00000163435 ENSMUSP00000127713 TRANSLATION protein_coding - - 1 556.0 0.0 9.4725 0.0 299.7 0.0 -4,0 0.001 9 0.0 MINOR ENSMUSG00000026384 Ptpn4 ENSMUST00000168429 ENSMUSP00000130299 TRANSLATION protein_coding start/stop - 3 144.0 0.0 3.36 0.0 37.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026384 Ptpn4 ENSMUST00000168808 - NO_TRANSLATION retained_intron ENSMUSG00000026384 Ptpn4 ENSMUST00000163621 ENSMUSP00000130808 TRANSLATION protein_coding - - 3 88.0 0.0 1.315 0.0 47.5 0.0 -4,0 0.0 1 0.0 MINOR ENSMUSG00000026384 Ptpn4 ENSMUST00000164269 ENSMUSP00000126130 TRANSLATION nonsense_mediated_decay start - 5 40.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026384 Ptpn4 ENSMUST00000166422 ENSMUSP00000129180 TRANSLATION nonsense_mediated_decay - - 3 89.0 0.0 1.315 0.0 47.5 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000025905 Oprk1 ENSMUST00000239100 ENSMUSP00000158863 TRANSLATION protein_coding - - - 409.0 0.0 2.6 4.2 200.3 7.0 -4,-7 0.2395 - -2.0 MINOR ENSMUSG00000025905 Oprk1 ENSMUST00000160339 ENSMUSP00000124030 TRANSLATION protein_coding - CCDS14809.1 5 380.0 0.0 2.6 17.8 200.3 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025905 Oprk1 ENSMUST00000159083 - NO_TRANSLATION retained_intron ENSMUSG00000025905 Oprk1 ENSMUST00000192685 - NO_TRANSLATION retained_intron ENSMUSG00000025905 Oprk1 ENSMUST00000160777 ENSMUSP00000125105 TRANSLATION protein_coding - CCDS14809.1 1 380.0 0.0 2.6 17.8 200.3 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025905 Oprk1 ENSMUST00000027038 ENSMUSP00000027038 TRANSLATION protein_coding - CCDS14809.1 1 380.0 0.0 2.6 17.8 200.3 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000052477 Sp140l2 ENSMUST00000161685 ENSMUSP00000125170 TRANSLATION protein_coding start - 3 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052477 Sp140l2 ENSMUST00000159114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052477 Sp140l2 ENSMUST00000064341 ENSMUSP00000066587 TRANSLATION protein_coding - CCDS15109.1 1 263.0 0.0 2.0 0.0 130.7 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000052477 Sp140l2 ENSMUST00000093506 ENSMUSP00000091224 TRANSLATION protein_coding - CCDS35636.1 1 291.0 0.0 2.0 0.0 130.7 0.0 -4,-5 0.273 - 8.0 ALTERNATIVE:2 ENSMUSG00000052477 Sp140l2 ENSMUST00000161267 ENSMUSP00000124435 TRANSLATION protein_coding - - 3 119.0 0.0 2.0 0.0 124.7 0.0 -4,-5 0.0384 - 6.666 MINOR ENSMUSG00000052477 Sp140l2 ENSMUST00000159582 ENSMUSP00000125160 TRANSLATION protein_coding stop - 5 220.0 0.0 2.0 0.0 130.7 0.0 -4,-5 0.0213 - -2.0 MINOR ENSMUSG00000052477 Sp140l2 ENSMUST00000162421 ENSMUSP00000125215 TRANSLATION protein_coding - - 1 135.0 0.0 2.0 0.0 124.7 0.0 -4,-5 0.0306 - 6.666 MINOR ENSMUSG00000015961 Adss ENSMUST00000016105 ENSMUSP00000016105 TRANSLATION protein_coding - CCDS15555.1 1 456.0 17.0 11.25 17.1 601.9 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000015961 Adss ENSMUST00000161808 - NO_TRANSLATION retained_intron ENSMUSG00000015961 Adss ENSMUST00000159184 - NO_TRANSLATION retained_intron ENSMUSG00000094215 Gm6489 ENSMUST00000178167 ENSMUSP00000159554 TRANSLATION protein_coding - - - 253.0 0.0 0.64 0.0 78.0 0.0 -4,-5 0.7691 - 12.0 PRINCIPAL:1 ENSMUSG00000070939 Tgfbrap1 ENSMUST00000188728 ENSMUSP00000140169 TRANSLATION protein_coding stop - 3 254.0 0.0 0.0 0.0 28.9 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000070939 Tgfbrap1 ENSMUST00000189010 ENSMUSP00000140413 TRANSLATION protein_coding stop - 3 107.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000070939 Tgfbrap1 ENSMUST00000187525 - NO_TRANSLATION retained_intron ENSMUSG00000070939 Tgfbrap1 ENSMUST00000187872 - NO_TRANSLATION retained_intron ENSMUSG00000070939 Tgfbrap1 ENSMUST00000095014 ENSMUSP00000092624 TRANSLATION protein_coding - CCDS14920.1 1 860.0 4.0 0.0 14.5 274.9 0.0 -4,-7 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000070939 Tgfbrap1 ENSMUST00000186694 ENSMUSP00000140132 TRANSLATION protein_coding - CCDS14920.1 1 860.0 4.0 0.0 14.5 274.9 0.0 -4,-7 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000070939 Tgfbrap1 ENSMUST00000188598 - NO_TRANSLATION retained_intron ENSMUSG00000070939 Tgfbrap1 ENSMUST00000190427 ENSMUSP00000140384 TRANSLATION protein_coding stop - 3 52.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000025935 Tram1 ENSMUST00000185447 - NO_TRANSLATION retained_intron ENSMUSG00000025935 Tram1 ENSMUST00000188377 ENSMUSP00000140499 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 1.2 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000025935 Tram1 ENSMUST00000027068 ENSMUSP00000027068 TRANSLATION protein_coding - CCDS14822.1 1 374.0 0.0 7.9 32.8 165.7 8.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000070645 Ren1 ENSMUST00000094556 ENSMUSP00000092135 TRANSLATION protein_coding - CCDS15295.1 1 402.0 5.0 7.5 4.0 416.8 0.0 3,-2 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000070645 Ren1 ENSMUST00000112287 ENSMUSP00000107906 TRANSLATION protein_coding stop - 1 44.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055184 Fam72a ENSMUST00000068613 ENSMUSP00000068111 TRANSLATION protein_coding - CCDS15270.1 1 149.0 4.0 3.75 32.4 269.3 0.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000026502 Desi2 ENSMUST00000027783 ENSMUSP00000027783 TRANSLATION protein_coding - CCDS35803.1 1 194.0 0.0 5.25 29.8 145.2 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026502 Desi2 ENSMUST00000159284 ENSMUSP00000123860 TRANSLATION protein_coding stop - 5 135.0 0.0 3.75 0.0 135.8 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000026502 Desi2 ENSMUST00000161075 ENSMUSP00000124658 TRANSLATION protein_coding - - 1 178.0 0.0 4.75 5.9 135.8 0.0 -4,-5 0.1629 1 11.114 MINOR ENSMUSG00000026502 Desi2 ENSMUST00000069568 ENSMUSP00000063638 TRANSLATION protein_coding - - - 123.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - 0.0 MINOR ENSMUSG00000086727 4931428L18Rik ENSMUST00000249070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086727 4931428L18Rik ENSMUST00000187659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086727 4931428L18Rik ENSMUST00000187892 ENSMUSP00000139433 TRANSLATION protein_coding - - 3 241.0 0.0 0.64 0.0 72.7 0.0 -4,-5 0.7694 - 12.0 PRINCIPAL:1 ENSMUSG00000086727 4931428L18Rik ENSMUST00000233331 ENSMUSP00000156897 TRANSLATION protein_coding - - - 241.0 0.0 0.64 0.0 72.7 0.0 -4,-5 0.7694 - 12.0 PRINCIPAL:1 ENSMUSG00000086727 4931428L18Rik ENSMUST00000127775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086727 4931428L18Rik ENSMUST00000135245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086727 4931428L18Rik ENSMUST00000249071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086727 4931428L18Rik ENSMUST00000152491 ENSMUSP00000156852 TRANSLATION protein_coding - - - 241.0 0.0 0.64 0.0 72.7 0.0 -4,-5 0.7694 - 12.0 PRINCIPAL:1 ENSMUSG00000086727 4931428L18Rik ENSMUST00000188605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086727 4931428L18Rik ENSMUST00000249069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061518 Cox5b ENSMUST00000195151 ENSMUSP00000141224 TRANSLATION protein_coding start - 3 98.0 0.0 0.75 0.0 40.1 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000061518 Cox5b ENSMUST00000193235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061518 Cox5b ENSMUST00000193210 ENSMUSP00000141554 TRANSLATION protein_coding - CCDS14886.1 1 129.0 4.0 3.0 31.9 131.5 0.0 -2,2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000061518 Cox5b ENSMUST00000081180 ENSMUSP00000079944 TRANSLATION protein_coding - - 5 85.0 0.0 0.75 0.0 41.6 0.0 -2,2 0.0 1 2.106 MINOR ENSMUSG00000061518 Cox5b ENSMUST00000191790 - NO_TRANSLATION retained_intron ENSMUSG00000061518 Cox5b ENSMUST00000192859 - NO_TRANSLATION retained_intron ENSMUSG00000039323 Igfbp2 ENSMUST00000155703 - NO_TRANSLATION retained_intron ENSMUSG00000039323 Igfbp2 ENSMUST00000047328 ENSMUSP00000046610 TRANSLATION protein_coding - CCDS15036.1 1 305.0 0.0 3.0 0.3 114.1 0.0 1,-3 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000039323 Igfbp2 ENSMUST00000120564 ENSMUSP00000112706 TRANSLATION protein_coding - CCDS78613.1 3 158.0 0.0 2.0 4.2 68.1 0.0 -4,-7 0.6571 1 9.242 MINOR ENSMUSG00000026585 Kifap3 ENSMUST00000077642 ENSMUSP00000076830 TRANSLATION protein_coding - CCDS35751.1 1 772.0 0.0 1.33 4.1 1378.2 0.0 -4,-5 0.5114 13 12.656 MINOR ENSMUSG00000026585 Kifap3 ENSMUST00000027877 ENSMUSP00000027877 TRANSLATION protein_coding - CCDS78729.1 1 793.0 0.0 1.33 19.9 1378.2 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000008475 Arpc5 ENSMUST00000097536 ENSMUSP00000095143 TRANSLATION protein_coding - - 1 92.0 0.0 2.5 0.0 66.0 0.0 -4,-6 0.0 6 4.002 MINOR ENSMUSG00000008475 Arpc5 ENSMUST00000077755 ENSMUSP00000076933 TRANSLATION protein_coding - CCDS35739.1 1 151.0 0.0 3.5 34.9 207.6 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000008475 Arpc5 ENSMUST00000143008 - NO_TRANSLATION retained_intron ENSMUSG00000010453 Kansl3 ENSMUST00000010597 ENSMUSP00000010597 TRANSLATION protein_coding - CCDS14877.1 1 877.0 0.0 0.0 7.4 0.0 0.0 -4,-7 0.8926 12 2.43 ALTERNATIVE:1 ENSMUSG00000010453 Kansl3 ENSMUST00000188528 ENSMUSP00000139711 TRANSLATION nonsense_mediated_decay - - 3 84.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0159 - -2.0 MINOR ENSMUSG00000010453 Kansl3 ENSMUST00000188961 ENSMUSP00000140667 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0159 - -2.0 MINOR ENSMUSG00000010453 Kansl3 ENSMUST00000185621 ENSMUSP00000141616 TRANSLATION nonsense_mediated_decay - - 2 76.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0159 - -2.0 MINOR ENSMUSG00000010453 Kansl3 ENSMUST00000185912 ENSMUSP00000140547 TRANSLATION protein_coding - - 1 778.0 0.0 0.0 1.0 0.0 0.0 -4,-5 0.1374 12 0.0 MINOR ENSMUSG00000010453 Kansl3 ENSMUST00000188957 ENSMUSP00000140841 TRANSLATION protein_coding stop - 3 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0546 - -2.0 MINOR ENSMUSG00000010453 Kansl3 ENSMUST00000185614 - NO_TRANSLATION retained_intron ENSMUSG00000010453 Kansl3 ENSMUST00000187628 ENSMUSP00000140058 TRANSLATION protein_coding - - 5 90.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0159 - 0.0 MINOR ENSMUSG00000010453 Kansl3 ENSMUST00000186470 ENSMUSP00000140597 TRANSLATION protein_coding - CCDS78561.1 1 903.0 0.0 0.0 8.9 0.0 0.0 -4,-7 1.0 12 3.0 PRINCIPAL:4 ENSMUSG00000055033 Or6k2 ENSMUST00000068403 ENSMUSP00000069662 TRANSLATION protein_coding - CCDS15539.1 - 321.0 0.0 1.0 7.1 198.8 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000055033 Or6k2 ENSMUST00000213748 ENSMUSP00000149052 TRANSLATION protein_coding - CCDS15539.1 5 321.0 0.0 1.0 7.1 198.8 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042849 Or6b3 ENSMUST00000062353 ENSMUSP00000054752 TRANSLATION protein_coding - CCDS15170.1 2 312.0 0.0 1.0 10.4 175.6 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042849 Or6b3 ENSMUST00000189174 ENSMUSP00000140956 TRANSLATION protein_coding - CCDS15170.1 3 312.0 0.0 1.0 10.4 175.6 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067006 Serpinb5 ENSMUST00000086701 ENSMUSP00000083908 TRANSLATION protein_coding - CCDS35684.1 1 375.0 0.0 6.25 20.6 347.6 0.0 -4,-7 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000067006 Serpinb5 ENSMUST00000188745 ENSMUSP00000140264 TRANSLATION protein_coding stop - 3 74.0 0.0 1.5 0.0 57.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000067006 Serpinb5 ENSMUST00000112729 ENSMUSP00000108349 TRANSLATION protein_coding - CCDS35684.1 1 375.0 0.0 6.25 20.6 347.6 0.0 -4,-7 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000067006 Serpinb5 ENSMUST00000112730 ENSMUSP00000108350 TRANSLATION protein_coding - CCDS35684.1 1 375.0 0.0 6.25 20.6 347.6 0.0 -4,-7 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000016529 Il10 ENSMUST00000016673 ENSMUSP00000016673 TRANSLATION protein_coding - CCDS15265.1 1 178.0 0.0 4.1 8.9 332.0 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050711 Scg2 ENSMUST00000185234 ENSMUSP00000139740 TRANSLATION protein_coding - CCDS78625.1 1 577.0 0.0 0.0 1.1 395.9 0.0 4,-1 0.0647 16 0.03 MINOR ENSMUSG00000050711 Scg2 ENSMUST00000049972 ENSMUSP00000062556 TRANSLATION protein_coding - CCDS15089.1 2 617.0 0.0 0.0 11.1 771.0 0.0 4,-1 1.0 18 9.0 PRINCIPAL:1 ENSMUSG00000073650 Catip ENSMUST00000097697 ENSMUSP00000095303 TRANSLATION nonsense_mediated_decay - - 1 97.0 0.0 0.08 0.0 0.0 0.0 -4,-7 0.0275 - -2.0 MINOR ENSMUSG00000073650 Catip ENSMUST00000186688 - NO_TRANSLATION retained_intron ENSMUSG00000073650 Catip ENSMUST00000191010 - NO_TRANSLATION retained_intron ENSMUSG00000073650 Catip ENSMUST00000128445 ENSMUSP00000117442 TRANSLATION protein_coding - - 5 553.0 0.0 6.03 0.0 0.0 0.0 -4,-7 0.6571 3 6.0 PRINCIPAL:1 ENSMUSG00000073650 Catip ENSMUST00000240719 ENSMUSP00000159512 TRANSLATION protein_coding - - - 573.0 0.0 5.28 0.0 0.0 0.0 -4,-7 0.0871 3 4.5 MINOR ENSMUSG00000041498 Kif14 ENSMUST00000195390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041498 Kif14 ENSMUST00000201676 ENSMUSP00000144265 TRANSLATION nonsense_mediated_decay - - 5 497.0 10.0 1.066 0.0 64.7 0.0 -4,-2 0.0014 3 -2.0 MINOR ENSMUSG00000041498 Kif14 ENSMUST00000201158 - NO_TRANSLATION retained_intron ENSMUSG00000041498 Kif14 ENSMUST00000193587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041498 Kif14 ENSMUST00000189413 ENSMUSP00000139698 TRANSLATION protein_coding - CCDS78693.1 1 1674.0 11.0 9.325 0.1 447.5 0.0 -4,-2 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000041498 Kif14 ENSMUST00000195274 ENSMUSP00000142040 TRANSLATION protein_coding start/stop - 1 69.0 0.0 1.93 0.0 39.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041498 Kif14 ENSMUST00000187963 - NO_TRANSLATION retained_intron ENSMUSG00000049866 Arl4c ENSMUST00000051236 ENSMUSP00000057085 TRANSLATION nonsense_mediated_decay - CCDS15146.1 1 192.0 18.0 1.0 36.2 207.5 0.0 -4,-7 1.0 3 -2.0 MINOR ENSMUSG00000049866 Arl4c ENSMUST00000187810 ENSMUSP00000139499 TRANSLATION protein_coding - CCDS15146.1 1 192.0 18.0 1.0 36.2 207.5 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000049866 Arl4c ENSMUST00000159814 ENSMUSP00000124344 TRANSLATION protein_coding - CCDS15146.1 - 192.0 18.0 1.0 36.2 207.5 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000025963 Mdh1b ENSMUST00000114094 ENSMUSP00000109728 TRANSLATION protein_coding - CCDS15000.2 1 500.0 12.0 1.82 0.0 0.0 0.0 -4,-5 0.9238 3 12.0 PRINCIPAL:1 ENSMUSG00000025950 Idh1 ENSMUST00000097709 ENSMUSP00000095316 TRANSLATION protein_coding - CCDS15016.1 1 414.0 36.0 10.33 25.6 263.1 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000025950 Idh1 ENSMUST00000149310 ENSMUSP00000117853 TRANSLATION protein_coding stop - 5 143.0 12.0 3.25 0.0 86.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000025950 Idh1 ENSMUST00000188876 ENSMUSP00000139906 TRANSLATION protein_coding stop - 5 187.0 12.0 5.08 0.0 87.7 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000025950 Idh1 ENSMUST00000191459 ENSMUSP00000139430 TRANSLATION protein_coding stop - 2 19.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025950 Idh1 ENSMUST00000186222 ENSMUSP00000140694 TRANSLATION protein_coding stop - 3 84.0 6.0 2.25 0.0 46.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025950 Idh1 ENSMUST00000169032 ENSMUSP00000127307 TRANSLATION protein_coding - CCDS15016.1 5 414.0 36.0 10.33 25.6 263.1 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000025950 Idh1 ENSMUST00000188109 ENSMUSP00000140757 TRANSLATION protein_coding stop - 3 202.0 12.0 5.58 0.0 96.6 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000041144 Dnah7b ENSMUST00000188209 - NO_TRANSLATION retained_intron ENSMUSG00000041144 Dnah7b ENSMUST00000187548 - NO_TRANSLATION retained_intron ENSMUSG00000041144 Dnah7b ENSMUST00000190792 - NO_TRANSLATION retained_intron ENSMUSG00000041144 Dnah7b ENSMUST00000185557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041144 Dnah7b ENSMUST00000238212 ENSMUSP00000158612 TRANSLATION protein_coding - - - 4024.0 63.0 33.062 8.3 2674.5 0.0 -4,-6 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000041144 Dnah7b ENSMUST00000069293 ENSMUSP00000068738 TRANSLATION protein_coding - CCDS48253.1 5 4068.0 63.0 33.062 0.0 2674.5 0.0 -4,-5 0.5215 - 18.0 MINOR ENSMUSG00000041144 Dnah7b ENSMUST00000185879 ENSMUSP00000139723 TRANSLATION nonsense_mediated_decay start - 3 24.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0248 - -2.0 MINOR ENSMUSG00000053483 Usp21 ENSMUST00000147176 - NO_TRANSLATION retained_intron ENSMUSG00000053483 Usp21 ENSMUST00000127101 - NO_TRANSLATION retained_intron ENSMUSG00000053483 Usp21 ENSMUST00000149187 ENSMUSP00000120161 TRANSLATION nonsense_mediated_decay - - 2 451.0 2.0 5.85 0.0 111.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000053483 Usp21 ENSMUST00000126729 - NO_TRANSLATION retained_intron ENSMUSG00000053483 Usp21 ENSMUST00000126557 - NO_TRANSLATION retained_intron ENSMUSG00000053483 Usp21 ENSMUST00000111305 ENSMUSP00000106936 TRANSLATION protein_coding - CCDS35774.1 5 566.0 4.0 9.15 11.4 207.3 0.0 -4,-7 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000053483 Usp21 ENSMUST00000065941 ENSMUSP00000064002 TRANSLATION protein_coding - CCDS35774.1 1 566.0 4.0 9.15 11.4 207.3 0.0 -4,-7 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000053483 Usp21 ENSMUST00000153164 - NO_TRANSLATION retained_intron ENSMUSG00000053483 Usp21 ENSMUST00000142656 - NO_TRANSLATION retained_intron ENSMUSG00000053483 Usp21 ENSMUST00000174720 ENSMUSP00000133362 TRANSLATION protein_coding start/stop - 3 162.0 0.0 2.75 0.0 59.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000053483 Usp21 ENSMUST00000144393 - NO_TRANSLATION retained_intron ENSMUSG00000038209 Itln1 ENSMUST00000043094 ENSMUSP00000043837 TRANSLATION protein_coding - CCDS35777.1 1 313.0 0.0 6.41 8.1 23.4 0.0 4,-1 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000038209 Itln1 ENSMUST00000168184 ENSMUSP00000126385 TRANSLATION protein_coding start/stop - 5 140.0 0.0 2.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000051185 Fam174a ENSMUST00000059975 ENSMUSP00000057670 TRANSLATION protein_coding - CCDS35674.1 1 190.0 0.0 0.0 0.4 222.5 1.0 1,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000051185 Fam174a ENSMUST00000186780 ENSMUSP00000139943 TRANSLATION protein_coding - - 1 190.0 0.0 0.0 0.4 222.5 1.0 1,-2 0.6791 2 6.0 PRINCIPAL:1 ENSMUSG00000067001 Serpinb7 ENSMUST00000154538 ENSMUSP00000119217 TRANSLATION protein_coding stop - 2 97.0 0.0 1.425 0.0 64.6 2.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000067001 Serpinb7 ENSMUST00000086690 ENSMUSP00000083896 TRANSLATION protein_coding - CCDS35686.1 1 380.0 0.0 4.505 9.9 395.3 2.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000048234 Rnf149 ENSMUST00000153381 - NO_TRANSLATION retained_intron ENSMUSG00000048234 Rnf149 ENSMUST00000062525 ENSMUSP00000050388 TRANSLATION protein_coding - CCDS14907.1 1 394.0 8.0 3.885 4.7 73.7 2.0 1,-4 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000048234 Rnf149 ENSMUST00000195136 ENSMUSP00000141667 TRANSLATION nonsense_mediated_decay - - 5 150.0 2.0 2.125 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000048234 Rnf149 ENSMUST00000195705 ENSMUSP00000141233 TRANSLATION protein_coding - - 3 44.0 0.0 0.0 0.0 0.0 0.0 1,-4 0.002 - 0.0 MINOR ENSMUSG00000026281 Dtymk ENSMUST00000112890 ENSMUSP00000108511 TRANSLATION protein_coding - CCDS35672.1 1 80.0 7.0 2.0 0.0 71.6 0.0 -4,-7 0.0025 3 2.04 MINOR ENSMUSG00000026281 Dtymk ENSMUST00000144106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026281 Dtymk ENSMUST00000027503 ENSMUSP00000027503 TRANSLATION protein_coding - CCDS48329.1 1 212.0 13.0 5.0 30.3 170.9 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000026281 Dtymk ENSMUST00000112893 ENSMUSP00000108514 TRANSLATION protein_coding - - 2 154.0 6.0 3.0 0.0 88.2 0.0 -4,-7 0.0 6 4.368 MINOR ENSMUSG00000038463 Olfml2b ENSMUST00000046792 ENSMUSP00000047291 TRANSLATION protein_coding - CCDS15473.1 1 746.0 0.0 1.28 2.3 281.9 0.0 4,-1 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000043230 Fam124b ENSMUST00000058748 ENSMUSP00000052208 TRANSLATION protein_coding - CCDS15093.1 1 456.0 0.0 0.0 1.1 348.1 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000043230 Fam124b ENSMUST00000161427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026696 Vamp4 ENSMUST00000128704 - NO_TRANSLATION retained_intron ENSMUSG00000026696 Vamp4 ENSMUST00000050010 ENSMUSP00000051544 TRANSLATION protein_coding - CCDS15421.1 1 141.0 0.0 2.65 4.3 107.5 1.0 -4,-5 0.4765 2 12.153 MINOR ENSMUSG00000026696 Vamp4 ENSMUST00000194810 ENSMUSP00000142298 TRANSLATION protein_coding - - 5 100.0 0.0 0.9 0.0 0.0 0.0 -4,-5 0.0 1 1.812 MINOR ENSMUSG00000026696 Vamp4 ENSMUST00000132158 ENSMUSP00000121977 TRANSLATION protein_coding - CCDS15421.1 3 141.0 0.0 2.65 4.3 107.5 1.0 -4,-5 0.4765 2 12.153 MINOR ENSMUSG00000026696 Vamp4 ENSMUST00000135241 ENSMUSP00000116376 TRANSLATION protein_coding - CCDS83616.1 1 141.0 0.0 2.98 10.8 110.7 1.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026696 Vamp4 ENSMUST00000150040 ENSMUSP00000115133 TRANSLATION protein_coding - CCDS83616.1 5 141.0 0.0 2.98 10.8 110.7 1.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026696 Vamp4 ENSMUST00000155003 ENSMUSP00000114172 TRANSLATION protein_coding - CCDS83616.1 3 141.0 0.0 2.98 10.8 110.7 1.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026696 Vamp4 ENSMUST00000138499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026049 Tex30 ENSMUST00000147661 ENSMUSP00000119648 TRANSLATION protein_coding stop - 3 71.0 2.0 0.76 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026049 Tex30 ENSMUST00000027215 ENSMUSP00000027215 TRANSLATION protein_coding - CCDS48249.1 1 225.0 6.0 3.7 14.5 24.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000026049 Tex30 ENSMUST00000128190 ENSMUSP00000117565 TRANSLATION protein_coding - CCDS48249.1 1 225.0 6.0 3.7 14.5 24.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000026049 Tex30 ENSMUST00000152239 ENSMUSP00000114991 TRANSLATION protein_coding - CCDS48249.1 1 225.0 6.0 3.7 14.5 24.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000026049 Tex30 ENSMUST00000143327 ENSMUSP00000118446 TRANSLATION protein_coding stop - 5 49.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000026049 Tex30 ENSMUST00000149502 ENSMUSP00000115939 TRANSLATION protein_coding stop - 5 88.0 2.0 1.64 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026049 Tex30 ENSMUST00000156392 ENSMUSP00000121035 TRANSLATION protein_coding - CCDS48249.1 5 225.0 6.0 3.7 14.5 24.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000026049 Tex30 ENSMUST00000147571 ENSMUSP00000114624 TRANSLATION protein_coding - CCDS48249.1 1 225.0 6.0 3.7 14.5 24.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000026049 Tex30 ENSMUST00000125540 ENSMUSP00000121385 TRANSLATION protein_coding stop - 5 96.0 2.0 1.64 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026049 Tex30 ENSMUST00000150911 ENSMUSP00000120928 TRANSLATION protein_coding - CCDS48249.1 2 225.0 6.0 3.7 14.5 24.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000026049 Tex30 ENSMUST00000129702 ENSMUSP00000115464 TRANSLATION protein_coding stop - 3 77.0 1.0 1.096 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026049 Tex30 ENSMUST00000133677 ENSMUSP00000115068 TRANSLATION protein_coding - CCDS48249.1 1 225.0 6.0 3.7 14.5 24.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000026049 Tex30 ENSMUST00000127923 ENSMUSP00000122203 TRANSLATION protein_coding stop - 5 69.0 2.0 1.66 0.0 0.0 0.0 -4,-1 0.0003 1 -2.0 MINOR ENSMUSG00000089960 Ugt1a1 ENSMUST00000073049 ENSMUSP00000072803 TRANSLATION protein_coding - CCDS15143.1 1 535.0 21.0 5.0 0.4 794.4 0.0 3,-1 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000038242 Aox4 ENSMUST00000040442 ENSMUSP00000048929 TRANSLATION protein_coding - CCDS14970.1 1 1336.0 80.0 29.65 11.1 1073.2 0.0 -4,-5 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000038242 Aox4 ENSMUST00000161926 - NO_TRANSLATION retained_intron ENSMUSG00000038242 Aox4 ENSMUST00000189059 - NO_TRANSLATION retained_intron ENSMUSG00000038242 Aox4 ENSMUST00000159240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038242 Aox4 ENSMUST00000161833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006304 Arpc2 ENSMUST00000113820 ENSMUSP00000109451 TRANSLATION protein_coding - CCDS35612.1 1 300.0 0.0 7.75 36.2 347.1 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000006304 Arpc2 ENSMUST00000006467 ENSMUSP00000006467 TRANSLATION protein_coding - CCDS35612.1 1 300.0 0.0 7.75 36.2 347.1 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000006304 Arpc2 ENSMUST00000113819 ENSMUSP00000109450 TRANSLATION protein_coding - - 5 284.0 0.0 7.0 0.0 347.1 0.0 -4,-5 0.0213 15 10.5 MINOR ENSMUSG00000006304 Arpc2 ENSMUST00000185733 ENSMUSP00000140762 TRANSLATION protein_coding stop - 3 26.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034088 Hdlbp ENSMUST00000186164 ENSMUSP00000139671 TRANSLATION protein_coding - - 5 1199.0 0.0 12.32 1.0 595.0 0.0 -4,-5 0.159 50 8.802 MINOR ENSMUSG00000034088 Hdlbp ENSMUST00000188165 ENSMUSP00000139777 TRANSLATION protein_coding stop - 3 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000034088 Hdlbp ENSMUST00000186787 ENSMUSP00000139719 TRANSLATION protein_coding stop - 5 141.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000034088 Hdlbp ENSMUST00000188844 - NO_TRANSLATION retained_intron ENSMUSG00000034088 Hdlbp ENSMUST00000170883 ENSMUSP00000127903 TRANSLATION protein_coding - CCDS15189.1 1 1268.0 0.0 12.72 19.8 635.0 0.0 -4,-5 1.0 55 16.0 PRINCIPAL:1 ENSMUSG00000034088 Hdlbp ENSMUST00000042498 ENSMUSP00000043047 TRANSLATION protein_coding - CCDS15189.1 1 1268.0 0.0 12.72 19.8 635.0 0.0 -4,-5 1.0 55 16.0 PRINCIPAL:1 ENSMUSG00000034088 Hdlbp ENSMUST00000189951 - NO_TRANSLATION retained_intron ENSMUSG00000034088 Hdlbp ENSMUST00000188988 ENSMUSP00000140946 TRANSLATION protein_coding stop - 2 178.0 0.0 1.08 0.0 21.6 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000034088 Hdlbp ENSMUST00000185349 - NO_TRANSLATION retained_intron ENSMUSG00000034088 Hdlbp ENSMUST00000189025 ENSMUSP00000140399 TRANSLATION protein_coding stop - 5 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000034088 Hdlbp ENSMUST00000190321 ENSMUSP00000139448 TRANSLATION protein_coding stop - 5 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 1 -2.0 MINOR ENSMUSG00000091318 Semp2l1 ENSMUST00000171322 ENSMUSP00000132789 TRANSLATION protein_coding - CCDS48234.1 - 478.0 5.0 0.8 0.0 140.8 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000026407 Cacna1s ENSMUST00000159106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026407 Cacna1s ENSMUST00000161865 ENSMUSP00000125262 TRANSLATION protein_coding start - 5 1507.0 0.0 25.7 0.0 938.5 16.0 -4,-6 0.1159 15 -2.0 MINOR ENSMUSG00000026407 Cacna1s ENSMUST00000160641 ENSMUSP00000125278 TRANSLATION protein_coding - - 5 1850.0 0.0 30.2 0.4 1114.6 19.0 -4,-6 0.6878 18 8.0 ALTERNATIVE:2 ENSMUSG00000026407 Cacna1s ENSMUST00000112064 ENSMUSP00000107695 TRANSLATION protein_coding - CCDS35724.1 2 1852.0 0.0 30.2 0.4 1114.8 19.0 -4,-6 1.0 18 8.0 PRINCIPAL:4 ENSMUSG00000026407 Cacna1s ENSMUST00000161700 - NO_TRANSLATION retained_intron ENSMUSG00000026407 Cacna1s ENSMUST00000112068 ENSMUSP00000107699 TRANSLATION protein_coding - CCDS48380.1 1 1831.0 0.0 30.1 0.3 1116.4 19.0 -4,-6 0.7648 18 7.802 ALTERNATIVE:2 ENSMUSG00000053318 Slamf8 ENSMUST00000065679 ENSMUSP00000067527 TRANSLATION protein_coding - CCDS15517.1 1 278.0 0.0 0.4 4.2 0.0 0.0 3,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000053318 Slamf8 ENSMUST00000193843 - NO_TRANSLATION retained_intron ENSMUSG00000041859 Mcm3 ENSMUST00000185296 - NO_TRANSLATION retained_intron ENSMUSG00000041859 Mcm3 ENSMUST00000190421 - NO_TRANSLATION retained_intron ENSMUSG00000041859 Mcm3 ENSMUST00000053266 ENSMUSP00000059192 TRANSLATION protein_coding - CCDS14843.1 1 812.0 16.0 12.3 2.5 578.1 0.0 -4,-5 1.0 29 19.0 PRINCIPAL:1 ENSMUSG00000041859 Mcm3 ENSMUST00000188112 - NO_TRANSLATION retained_intron ENSMUSG00000041859 Mcm3 ENSMUST00000191061 - NO_TRANSLATION retained_intron ENSMUSG00000118590 Gm15433 ENSMUST00000239195 ENSMUSP00000159245 TRANSLATION protein_coding - - - 296.0 0.0 1.0 0.1 0.0 0.0 -4,-7 0.6725 - 6.0 PRINCIPAL:1 ENSMUSG00000053286 Trmt1l ENSMUST00000065625 ENSMUSP00000068309 TRANSLATION protein_coding - CCDS15361.1 1 728.0 21.0 1.972 2.9 223.6 0.0 -4,-5 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000053286 Trmt1l ENSMUST00000188843 - NO_TRANSLATION retained_intron ENSMUSG00000053286 Trmt1l ENSMUST00000186244 - NO_TRANSLATION retained_intron ENSMUSG00000053286 Trmt1l ENSMUST00000185230 - NO_TRANSLATION retained_intron ENSMUSG00000053286 Trmt1l ENSMUST00000189655 ENSMUSP00000140009 TRANSLATION nonsense_mediated_decay - - 1 158.0 6.0 0.752 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053286 Trmt1l ENSMUST00000188679 - NO_TRANSLATION retained_intron ENSMUSG00000053286 Trmt1l ENSMUST00000188179 - NO_TRANSLATION retained_intron ENSMUSG00000026162 Nhej1 ENSMUST00000152855 ENSMUSP00000116797 TRANSLATION protein_coding - - 1 295.0 0.0 4.5 11.4 130.2 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000099913 Gm28551 ENSMUST00000144660 ENSMUSP00000139404 TRANSLATION nonsense_mediated_decay,RT - - 1 567.0 14.0 1.0 0.0 20.4 0.0 -4,-5 0.7884 - -2.0 PRINCIPAL:1 ENSMUSG00000016494 Cd34 ENSMUST00000110815 ENSMUSP00000106439 TRANSLATION protein_coding - CCDS48490.1 1 325.0 0.0 0.0 1.3 167.6 1.0 2,-2 0.1122 5 1.161 MINOR ENSMUSG00000016494 Cd34 ENSMUST00000195092 - NO_TRANSLATION retained_intron ENSMUSG00000016494 Cd34 ENSMUST00000194036 ENSMUSP00000141884 TRANSLATION nonsense_mediated_decay start - 5 104.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0014 - -2.0 MINOR ENSMUSG00000016494 Cd34 ENSMUST00000016638 ENSMUSP00000016638 TRANSLATION protein_coding - CCDS15640.1 1 382.0 0.0 0.0 2.3 252.1 1.0 2,-2 1.0 5 7.0 PRINCIPAL:1 ENSMUSG00000016494 Cd34 ENSMUST00000194458 - NO_TRANSLATION retained_intron ENSMUSG00000038496 Slc19a3 ENSMUST00000045560 ENSMUSP00000041683 TRANSLATION protein_coding - CCDS15101.1 1 488.0 0.0 1.544 1.1 583.3 9.0 -2,-4 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000038496 Slc19a3 ENSMUST00000142805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038496 Slc19a3 ENSMUST00000164473 ENSMUSP00000126646 TRANSLATION protein_coding - CCDS15101.1 1 488.0 0.0 1.544 1.1 583.3 9.0 -2,-4 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000026227 2810459M11Rik ENSMUST00000027429 ENSMUSP00000027429 TRANSLATION protein_coding - CCDS78641.1 1 286.0 0.0 0.0 3.3 239.7 0.0 -4,-5 0.6081 5 3.0 ALTERNATIVE:2 ENSMUSG00000026227 2810459M11Rik ENSMUST00000165824 ENSMUSP00000131459 TRANSLATION protein_coding - CCDS48302.1 1 287.0 0.0 0.0 3.3 247.0 0.0 -4,-5 1.0 5 3.0 PRINCIPAL:2 ENSMUSG00000014602 Kif1a ENSMUST00000188493 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014602 Kif1a ENSMUST00000086819 ENSMUSP00000084029 TRANSLATION protein_coding - CCDS78652.1 1 1698.0 11.0 14.55 14.6 927.0 0.0 -4,-1 1.0 28 16.872 MINOR ENSMUSG00000014602 Kif1a ENSMUST00000186828 ENSMUSP00000139403 TRANSLATION nonsense_mediated_decay start - 5 78.0 0.0 0.0 0.0 53.7 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000014602 Kif1a ENSMUST00000112958 ENSMUSP00000108582 TRANSLATION protein_coding - CCDS78651.1 1 1698.0 11.0 14.88 13.1 909.1 0.0 -4,-1 0.9239 26 16.944 MINOR ENSMUSG00000014602 Kif1a ENSMUST00000171796 ENSMUSP00000128432 TRANSLATION protein_coding - CCDS48327.1 1 1697.0 11.0 14.88 14.2 910.4 0.0 -4,-1 0.9346 26 17.228 ALTERNATIVE:1 ENSMUSG00000014602 Kif1a ENSMUST00000190249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014602 Kif1a ENSMUST00000190854 - NO_TRANSLATION retained_intron ENSMUSG00000014602 Kif1a ENSMUST00000190723 ENSMUSP00000140163 TRANSLATION protein_coding - - 5 1791.0 11.0 14.55 5.7 935.0 0.0 -4,-1 0.4233 29 14.56 MINOR ENSMUSG00000014602 Kif1a ENSMUST00000186861 ENSMUSP00000141194 TRANSLATION protein_coding stop - 2 109.0 10.0 2.75 0.0 87.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000014602 Kif1a ENSMUST00000188136 ENSMUSP00000140656 TRANSLATION nonsense_mediated_decay start - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000014602 Kif1a ENSMUST00000171556 ENSMUSP00000130717 TRANSLATION protein_coding - CCDS48326.1 1 1689.0 11.0 14.88 16.4 914.6 0.0 -4,-1 0.9896 26 18.0 PRINCIPAL:4 ENSMUSG00000058407 Txndc9 ENSMUST00000195032 ENSMUSP00000141595 TRANSLATION protein_coding - CCDS14898.1 2 226.0 0.0 4.0 8.1 40.2 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000058407 Txndc9 ENSMUST00000192960 ENSMUSP00000141281 TRANSLATION protein_coding - - 3 141.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 2 3.0 MINOR ENSMUSG00000058407 Txndc9 ENSMUST00000192237 ENSMUSP00000141640 TRANSLATION protein_coding stop - 3 169.0 0.0 3.0 0.0 40.1 0.0 -4,-5 0.001 4 -2.0 MINOR ENSMUSG00000058407 Txndc9 ENSMUST00000162031 ENSMUSP00000125491 TRANSLATION protein_coding - CCDS14898.1 1 226.0 0.0 4.0 8.1 40.2 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000058407 Txndc9 ENSMUST00000194747 - NO_TRANSLATION retained_intron ENSMUSG00000058407 Txndc9 ENSMUST00000195247 ENSMUSP00000141609 TRANSLATION protein_coding - CCDS14898.1 1 226.0 0.0 4.0 8.1 40.2 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000058407 Txndc9 ENSMUST00000194692 - NO_TRANSLATION retained_intron ENSMUSG00000058407 Txndc9 ENSMUST00000193832 ENSMUSP00000142188 TRANSLATION protein_coding - - 2 188.0 0.0 3.5 1.0 40.2 0.0 -4,-5 0.0775 4 10.998 MINOR ENSMUSG00000026450 Chit1 ENSMUST00000159963 ENSMUSP00000123979 TRANSLATION protein_coding - CCDS15304.1 1 464.0 2.0 8.5 5.7 354.1 0.0 3,-2 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000026450 Chit1 ENSMUST00000086475 ENSMUSP00000083666 TRANSLATION protein_coding - CCDS15304.1 1 464.0 2.0 8.5 5.7 354.1 0.0 3,-2 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000026450 Chit1 ENSMUST00000160060 ENSMUSP00000124331 TRANSLATION protein_coding - CCDS69943.1 1 396.0 2.0 6.5 0.1 288.8 0.0 3,-2 0.0262 9 6.08 MINOR ENSMUSG00000036251 Trpm8 ENSMUST00000040210 ENSMUSP00000036991 TRANSLATION protein_coding - CCDS48316.1 5 1104.0 0.0 18.318 8.0 0.0 3.0 -4,0 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000036251 Trpm8 ENSMUST00000171176 ENSMUSP00000131209 TRANSLATION protein_coding - CCDS48316.1 1 1104.0 0.0 18.318 8.0 0.0 3.0 -4,0 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000036251 Trpm8 ENSMUST00000148138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036251 Trpm8 ENSMUST00000113114 ENSMUSP00000108739 TRANSLATION protein_coding - CCDS48316.1 1 1104.0 0.0 18.318 8.0 0.0 3.0 -4,0 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000079554 Aox2 ENSMUST00000114366 ENSMUSP00000110006 TRANSLATION protein_coding - CCDS35576.1 1 1345.0 77.0 29.63 6.8 1087.7 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000090071 Cdk5r2 ENSMUST00000160379 ENSMUSP00000125322 TRANSLATION protein_coding - CCDS48290.1 - 369.0 0.0 0.8 4.2 299.8 0.0 -4,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000026241 Nppc ENSMUST00000027449 ENSMUSP00000027449 TRANSLATION protein_coding - CCDS15123.1 1 126.0 0.0 0.2 6.8 54.6 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026496 Parp1 ENSMUST00000191833 - NO_TRANSLATION retained_intron ENSMUSG00000026496 Parp1 ENSMUST00000193238 - NO_TRANSLATION retained_intron ENSMUSG00000026496 Parp1 ENSMUST00000194608 ENSMUSP00000142295 TRANSLATION nonsense_mediated_decay - - 5 68.0 4.0 1.5 0.0 60.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026496 Parp1 ENSMUST00000191639 - NO_TRANSLATION retained_intron ENSMUSG00000026496 Parp1 ENSMUST00000194434 ENSMUSP00000141775 TRANSLATION protein_coding stop - 2 67.0 2.0 2.16 0.0 34.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026496 Parp1 ENSMUST00000027777 ENSMUSP00000027777 TRANSLATION protein_coding - CCDS15569.1 1 1014.0 6.0 23.29 8.2 740.2 0.0 -4,-5 1.0 37 21.0 PRINCIPAL:1 ENSMUSG00000026496 Parp1 ENSMUST00000195560 ENSMUSP00000141301 TRANSLATION protein_coding start - 5 99.0 2.0 3.08 0.0 85.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026496 Parp1 ENSMUST00000192411 - NO_TRANSLATION retained_intron ENSMUSG00000041303 Gtf3c3 ENSMUST00000189906 - NO_TRANSLATION retained_intron ENSMUSG00000041303 Gtf3c3 ENSMUST00000041638 ENSMUSP00000039420 TRANSLATION protein_coding - CCDS14958.1 1 882.0 0.0 2.25 13.0 41.8 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000041303 Gtf3c3 ENSMUST00000190419 - NO_TRANSLATION retained_intron ENSMUSG00000026594 Ralgps2 ENSMUST00000189648 ENSMUSP00000140108 TRANSLATION protein_coding stop - 3 67.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026594 Ralgps2 ENSMUST00000189316 ENSMUSP00000140230 TRANSLATION protein_coding - - 1 523.0 0.0 8.925 0.0 178.6 0.0 -4,-5 0.001 12 2.664 MINOR ENSMUSG00000026594 Ralgps2 ENSMUST00000185198 ENSMUSP00000139618 TRANSLATION protein_coding - - 1 568.0 0.0 9.925 0.0 178.6 0.0 -4,-5 0.0166 12 4.668 MINOR ENSMUSG00000026594 Ralgps2 ENSMUST00000188656 ENSMUSP00000140342 TRANSLATION protein_coding - - 1 489.0 0.0 7.925 0.0 178.6 0.0 -4,-5 0.0004 12 0.666 MINOR ENSMUSG00000026594 Ralgps2 ENSMUST00000063199 ENSMUSP00000063872 TRANSLATION protein_coding - CCDS15396.1 1 590.0 0.0 10.925 21.2 213.9 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000026594 Ralgps2 ENSMUST00000189208 - NO_TRANSLATION retained_intron ENSMUSG00000026594 Ralgps2 ENSMUST00000191605 ENSMUSP00000139645 TRANSLATION protein_coding - CCDS15396.1 1 590.0 0.0 10.925 21.2 213.9 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000026594 Ralgps2 ENSMUST00000190762 ENSMUSP00000139822 TRANSLATION protein_coding stop - 5 128.0 0.0 2.7 0.0 62.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026594 Ralgps2 ENSMUST00000191503 - NO_TRANSLATION retained_intron ENSMUSG00000026594 Ralgps2 ENSMUST00000172057 ENSMUSP00000132533 TRANSLATION protein_coding - CCDS48405.1 1 555.0 0.0 10.325 0.1 210.2 0.0 -4,-6 0.0798 12 6.8 MINOR ENSMUSG00000026594 Ralgps2 ENSMUST00000027886 ENSMUSP00000027886 TRANSLATION protein_coding - CCDS48406.1 1 564.0 0.0 10.925 17.4 213.9 0.0 -4,-5 0.9566 13 11.248 ALTERNATIVE:1 ENSMUSG00000026594 Ralgps2 ENSMUST00000190648 ENSMUSP00000140055 TRANSLATION protein_coding - - 1 463.0 0.0 7.925 0.0 178.6 0.0 -4,-5 0.0004 12 0.666 MINOR ENSMUSG00000026594 Ralgps2 ENSMUST00000171292 ENSMUSP00000130581 TRANSLATION protein_coding - CCDS15396.1 5 590.0 0.0 10.925 21.2 213.9 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000026594 Ralgps2 ENSMUST00000185970 - NO_TRANSLATION retained_intron ENSMUSG00000026594 Ralgps2 ENSMUST00000192343 ENSMUSP00000142004 TRANSLATION nonsense_mediated_decay - - 1 78.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000051285 Pcmtd1 ENSMUST00000182388 - NO_TRANSLATION retained_intron ENSMUSG00000051285 Pcmtd1 ENSMUST00000183204 - NO_TRANSLATION retained_intron ENSMUSG00000051285 Pcmtd1 ENSMUST00000182306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051285 Pcmtd1 ENSMUST00000182823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051285 Pcmtd1 ENSMUST00000182675 ENSMUSP00000138149 TRANSLATION nonsense_mediated_decay start - 5 52.0 5.0 0.132 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051285 Pcmtd1 ENSMUST00000061280 ENSMUSP00000059261 TRANSLATION protein_coding - CCDS35508.1 1 357.0 20.0 1.582 33.9 103.6 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000051285 Pcmtd1 ENSMUST00000182114 ENSMUSP00000138680 TRANSLATION protein_coding stop - 1 87.0 1.0 0.45 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000051285 Pcmtd1 ENSMUST00000182892 - NO_TRANSLATION retained_intron ENSMUSG00000026051 Ecrg4 ENSMUST00000027217 ENSMUSP00000027217 TRANSLATION protein_coding - CCDS14925.1 1 148.0 0.0 1.1 9.1 177.6 0.0 1,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000104423 A030005K14Rik ENSMUST00000193762 ENSMUSP00000152700 TRANSLATION protein_coding - - - 122.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000026336 Slco6d1 ENSMUST00000162468 ENSMUSP00000125258 TRANSLATION nonsense_mediated_decay - - 1 317.0 0.0 0.0 0.0 118.5 10.0 -4,-5 0.0077 - -2.0 MINOR ENSMUSG00000026336 Slco6d1 ENSMUST00000027575 ENSMUSP00000027575 TRANSLATION protein_coding - CCDS48332.1 1 683.0 0.0 0.0 0.0 395.0 15.0 -4,-5 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000026336 Slco6d1 ENSMUST00000162782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026336 Slco6d1 ENSMUST00000160796 ENSMUSP00000123850 TRANSLATION protein_coding - CCDS48333.1 1 650.0 0.0 0.0 0.1 395.0 15.0 -4,-5 0.3477 - 2.0 ALTERNATIVE:2 ENSMUSG00000026005 Rpe ENSMUST00000113995 ENSMUSP00000109628 TRANSLATION protein_coding - CCDS78602.1 3 235.0 11.0 6.16 4.9 0.0 0.0 -4,-5 0.3494 4 12.436 MINOR ENSMUSG00000026005 Rpe ENSMUST00000190404 ENSMUSP00000140257 TRANSLATION nonsense_mediated_decay - - 5 50.0 2.0 1.0 0.0 0.0 0.0 -4,-5 0.0031 1 -2.0 MINOR ENSMUSG00000026005 Rpe ENSMUST00000151016 ENSMUSP00000137860 TRANSLATION nonsense_mediated_decay - - 3 41.0 2.0 1.0 0.0 0.0 0.0 -4,-5 0.0031 1 -2.0 MINOR ENSMUSG00000026005 Rpe ENSMUST00000027157 ENSMUSP00000027157 TRANSLATION protein_coding - CCDS15022.1 1 228.0 11.0 6.16 36.9 0.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000026005 Rpe ENSMUST00000142920 ENSMUSP00000137941 TRANSLATION nonsense_mediated_decay - - 3 71.0 2.0 1.0 0.0 0.0 0.0 -4,-5 0.0031 1 -2.0 MINOR ENSMUSG00000026275 Ppp1r7 ENSMUST00000127141 ENSMUSP00000124279 TRANSLATION nonsense_mediated_decay start - 5 109.0 0.0 1.57 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026275 Ppp1r7 ENSMUST00000027494 ENSMUSP00000027494 TRANSLATION protein_coding - CCDS15187.1 1 361.0 0.0 7.65 15.5 121.2 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000026275 Ppp1r7 ENSMUST00000185498 ENSMUSP00000140544 TRANSLATION protein_coding stop - 3 146.0 0.0 3.25 0.0 61.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026691 Fmo3 ENSMUST00000142759 - NO_TRANSLATION retained_intron ENSMUSG00000026691 Fmo3 ENSMUST00000028010 ENSMUSP00000028010 TRANSLATION protein_coding - CCDS15426.1 1 534.0 31.0 7.75 16.9 940.5 0.0 -3,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000026425 Srgap2 ENSMUST00000186543 ENSMUSP00000139405 TRANSLATION protein_coding - - 5 858.0 0.0 10.378 0.4 264.8 0.0 -4,-5 0.1602 28 12.0 MINOR ENSMUSG00000026425 Srgap2 ENSMUST00000187273 ENSMUSP00000139462 TRANSLATION protein_coding stop - 2 55.0 0.0 1.0 0.0 52.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026425 Srgap2 ENSMUST00000185596 ENSMUSP00000141140 TRANSLATION protein_coding start - 5 649.0 0.0 7.498 0.0 199.9 0.0 -4,-5 0.0005 19 -2.0 MINOR ENSMUSG00000026425 Srgap2 ENSMUST00000188770 ENSMUSP00000140910 TRANSLATION protein_coding start - 1 451.0 0.0 5.298 0.0 199.9 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000026425 Srgap2 ENSMUST00000185445 ENSMUSP00000140787 TRANSLATION protein_coding stop - 5 110.0 0.0 1.0 0.0 68.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026425 Srgap2 ENSMUST00000189893 - NO_TRANSLATION retained_intron ENSMUSG00000026425 Srgap2 ENSMUST00000187042 ENSMUSP00000140927 TRANSLATION protein_coding start - 5 267.0 0.0 1.8 0.0 41.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026425 Srgap2 ENSMUST00000188604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026425 Srgap2 ENSMUST00000188437 - NO_TRANSLATION retained_intron ENSMUSG00000026425 Srgap2 ENSMUST00000097588 ENSMUSP00000095195 TRANSLATION protein_coding - CCDS48355.1 5 1071.0 0.0 10.378 15.6 264.8 0.0 -4,-5 1.0 32 16.0 PRINCIPAL:1 ENSMUSG00000026425 Srgap2 ENSMUST00000190336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026425 Srgap2 ENSMUST00000189892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026192 Atic ENSMUST00000154855 - NO_TRANSLATION retained_intron ENSMUSG00000026192 Atic ENSMUST00000155769 - NO_TRANSLATION retained_intron ENSMUSG00000026192 Atic ENSMUST00000027384 ENSMUSP00000027384 TRANSLATION protein_coding - CCDS15030.1 1 592.0 36.0 14.58 30.3 402.2 0.0 -2,-3 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000026192 Atic ENSMUST00000148077 - NO_TRANSLATION retained_intron ENSMUSG00000026192 Atic ENSMUST00000136443 - NO_TRANSLATION retained_intron ENSMUSG00000026192 Atic ENSMUST00000187982 - NO_TRANSLATION retained_intron ENSMUSG00000015316 Slamf1 ENSMUST00000163992 - NO_TRANSLATION retained_intron ENSMUSG00000015316 Slamf1 ENSMUST00000015460 ENSMUSP00000015460 TRANSLATION protein_coding - CCDS15502.1 1 343.0 0.0 1.6 6.3 198.1 0.0 3,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000026628 Atf3 ENSMUST00000131854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026628 Atf3 ENSMUST00000027941 ENSMUSP00000027941 TRANSLATION protein_coding - CCDS15616.1 1 181.0 0.0 1.8 25.9 43.8 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026628 Atf3 ENSMUST00000195117 ENSMUSP00000141492 TRANSLATION protein_coding - CCDS15616.1 1 181.0 0.0 1.8 25.9 43.8 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000079436 Kcnj13 ENSMUST00000174179 ENSMUSP00000133524 TRANSLATION protein_coding - - 5 86.0 0.0 0.666 0.0 51.6 1.0 -4,-2 0.0 2 1.794 MINOR ENSMUSG00000079436 Kcnj13 ENSMUST00000113212 ENSMUSP00000108838 TRANSLATION protein_coding - CCDS35653.1 2 360.0 0.0 2.23 12.2 304.0 3.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000026224 4933407L21Rik ENSMUST00000188949 - NO_TRANSLATION retained_intron ENSMUSG00000026224 4933407L21Rik ENSMUST00000129392 ENSMUSP00000116804 TRANSLATION protein_coding - - 3 62.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0197 - 0.0 ALTERNATIVE:2 ENSMUSG00000026224 4933407L21Rik ENSMUST00000027426 ENSMUSP00000027426 TRANSLATION protein_coding - - 1 131.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5659 - 0.0 PRINCIPAL:2 ENSMUSG00000026452 Syt2 ENSMUST00000188842 ENSMUSP00000140081 TRANSLATION protein_coding - CCDS15312.1 1 422.0 19.0 6.3 16.4 183.2 0.0 -4,-7 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000026452 Syt2 ENSMUST00000187725 ENSMUSP00000141156 TRANSLATION protein_coding stop - 1 69.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026452 Syt2 ENSMUST00000187702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026452 Syt2 ENSMUST00000121990 ENSMUSP00000112438 TRANSLATION protein_coding - CCDS15312.1 1 422.0 19.0 6.3 16.4 183.2 0.0 -4,-7 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000042686 Jph1 ENSMUST00000186024 ENSMUSP00000140705 TRANSLATION nonsense_mediated_decay start - 5 136.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000042686 Jph1 ENSMUST00000038382 ENSMUSP00000039072 TRANSLATION protein_coding - CCDS14833.1 1 660.0 0.0 0.48 6.2 155.7 1.0 -4,-5 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000109510 Gm42417 ENSMUST00000207088 ENSMUSP00000146551 TRANSLATION nonsense_mediated_decay,RT start - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000109510 Gm42417 ENSMUST00000191849 ENSMUSP00000142202 TRANSLATION protein_coding,RT - - 1 126.0 0.0 3.15 0.0 55.8 0.0 -4,-5 0.7437 - -2.0 PRINCIPAL:5 ENSMUSG00000025776 Crispld1 ENSMUST00000160305 ENSMUSP00000123800 TRANSLATION protein_coding stop - 3 163.0 1.0 2.4 0.0 39.1 0.0 2,-3 0.0008 - -2.0 MINOR ENSMUSG00000025776 Crispld1 ENSMUST00000095075 ENSMUSP00000092686 TRANSLATION protein_coding - CCDS35519.1 1 500.0 2.0 6.07 15.8 249.7 0.0 2,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000025776 Crispld1 ENSMUST00000159958 ENSMUSP00000124095 TRANSLATION protein_coding - CCDS35519.1 1 500.0 2.0 6.07 15.8 249.7 0.0 2,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000026527 Rgs7 ENSMUST00000195477 ENSMUSP00000142181 TRANSLATION protein_coding start - 1 191.0 0.0 4.18 0.0 123.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026527 Rgs7 ENSMUST00000195324 ENSMUSP00000141380 TRANSLATION protein_coding - CCDS83644.1 5 477.0 0.0 10.4925 12.5 238.9 0.0 -4,-5 0.9401 12 14.5 MINOR ENSMUSG00000026527 Rgs7 ENSMUST00000192227 ENSMUSP00000142278 TRANSLATION protein_coding - CCDS15546.1 1 469.0 0.0 10.4425 19.4 238.9 0.0 -4,-5 1.0 13 15.898 PRINCIPAL:1 ENSMUSG00000026527 Rgs7 ENSMUST00000194555 ENSMUSP00000142180 TRANSLATION protein_coding - CCDS78755.1 1 470.0 0.0 10.3425 1.1 238.9 0.0 -4,-5 0.4549 12 11.72 MINOR ENSMUSG00000026527 Rgs7 ENSMUST00000192203 ENSMUSP00000141284 TRANSLATION protein_coding start - 1 71.0 0.0 1.53 0.0 34.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026527 Rgs7 ENSMUST00000194288 ENSMUSP00000141855 TRANSLATION protein_coding start - 5 178.0 0.0 3.58 0.0 123.1 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000026527 Rgs7 ENSMUST00000193798 - NO_TRANSLATION retained_intron ENSMUSG00000026527 Rgs7 ENSMUST00000027812 ENSMUSP00000027812 TRANSLATION protein_coding - CCDS15546.1 5 469.0 0.0 10.4425 19.4 238.9 0.0 -4,-5 1.0 13 15.898 PRINCIPAL:1 ENSMUSG00000073702 Rpl31 ENSMUST00000086535 ENSMUSP00000083722 TRANSLATION protein_coding - CCDS14904.1 1 125.0 0.0 3.29 33.9 179.0 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000073702 Rpl31 ENSMUST00000178079 ENSMUSP00000136354 TRANSLATION protein_coding - CCDS14904.1 2 125.0 0.0 3.29 33.9 179.0 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000073702 Rpl31 ENSMUST00000191855 - NO_TRANSLATION retained_intron ENSMUSG00000073702 Rpl31 ENSMUST00000195123 ENSMUSP00000142039 TRANSLATION protein_coding - - 3 87.0 0.0 1.8 0.0 131.1 0.0 -4,-5 0.0 4 6.144 MINOR ENSMUSG00000073702 Rpl31 ENSMUST00000179954 ENSMUSP00000137631 TRANSLATION protein_coding - CCDS14904.1 1 125.0 0.0 3.29 33.9 179.0 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000073702 Rpl31 ENSMUST00000194746 ENSMUSP00000141808 TRANSLATION protein_coding - - 1 129.0 0.0 3.06 0.0 179.0 0.0 -4,-5 0.0245 6 11.538 MINOR ENSMUSG00000042349 Ikbke ENSMUST00000162285 - NO_TRANSLATION retained_intron ENSMUSG00000042349 Ikbke ENSMUST00000163029 - NO_TRANSLATION retained_intron ENSMUSG00000042349 Ikbke ENSMUST00000160748 - NO_TRANSLATION retained_intron ENSMUSG00000042349 Ikbke ENSMUST00000062108 ENSMUSP00000054126 TRANSLATION protein_coding - CCDS15269.1 1 717.0 12.0 11.79 8.0 157.5 0.0 -4,-6 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000042349 Ikbke ENSMUST00000162437 - NO_TRANSLATION retained_intron ENSMUSG00000042349 Ikbke ENSMUST00000161764 ENSMUSP00000124190 TRANSLATION protein_coding - - 1 693.0 11.0 11.04 1.8 100.3 0.0 -4,-5 0.1221 4 12.744 MINOR ENSMUSG00000042349 Ikbke ENSMUST00000159195 ENSMUSP00000124486 TRANSLATION protein_coding stop - 3 130.0 12.0 3.58 0.0 75.1 0.0 -4,-6 0.0005 - -2.0 MINOR ENSMUSG00000058729 Lin9 ENSMUST00000192561 ENSMUSP00000141331 TRANSLATION protein_coding - - 1 542.0 0.0 2.55 9.0 160.3 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000058729 Lin9 ENSMUST00000193162 - NO_TRANSLATION retained_intron ENSMUSG00000058729 Lin9 ENSMUST00000194373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058729 Lin9 ENSMUST00000191744 - NO_TRANSLATION retained_intron ENSMUSG00000058729 Lin9 ENSMUST00000194847 - NO_TRANSLATION retained_intron ENSMUSG00000058729 Lin9 ENSMUST00000085804 - NO_TRANSLATION retained_intron ENSMUSG00000058729 Lin9 ENSMUST00000194638 ENSMUSP00000142096 TRANSLATION nonsense_mediated_decay start - 5 73.0 0.0 0.0 0.0 56.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058729 Lin9 ENSMUST00000192725 ENSMUSP00000141503 TRANSLATION protein_coding - - 5 507.0 0.0 2.55 2.0 160.3 0.0 -4,-5 0.2715 3 12.375 MINOR ENSMUSG00000058729 Lin9 ENSMUST00000193892 ENSMUSP00000141530 TRANSLATION nonsense_mediated_decay - - 1 272.0 0.0 0.0 0.0 160.3 0.0 -4,-5 0.0353 2 -2.0 MINOR ENSMUSG00000038576 Susd4 ENSMUST00000153348 ENSMUSP00000119488 TRANSLATION protein_coding - CCDS15590.1 5 490.0 0.0 2.903 8.1 123.2 0.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000038576 Susd4 ENSMUST00000085724 ENSMUSP00000082873 TRANSLATION protein_coding - CCDS15590.1 1 490.0 0.0 2.903 8.1 123.2 0.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000038576 Susd4 ENSMUST00000194981 ENSMUSP00000141475 TRANSLATION protein_coding stop - 5 113.0 0.0 0.5 0.0 23.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038576 Susd4 ENSMUST00000193660 ENSMUSP00000141794 TRANSLATION protein_coding stop - 5 104.0 0.0 0.0 0.0 22.7 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000038576 Susd4 ENSMUST00000155229 ENSMUSP00000142330 TRANSLATION protein_coding stop - 3 148.0 0.0 1.328 0.0 26.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000039342 Ankar ENSMUST00000212710 ENSMUSP00000148555 TRANSLATION protein_coding stop - 5 138.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000039342 Ankar ENSMUST00000211837 ENSMUSP00000148801 TRANSLATION protein_coding - CCDS83554.1 1 1464.0 0.0 4.642 0.0 24.6 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:4 ENSMUSG00000039342 Ankar ENSMUST00000053499 ENSMUSP00000054056 TRANSLATION protein_coding - CCDS15035.1 1 1465.0 0.0 4.542 0.0 24.6 0.0 -4,-5 0.9393 - 7.802 ALTERNATIVE:2 ENSMUSG00000039342 Ankar ENSMUST00000212573 ENSMUSP00000148640 TRANSLATION protein_coding - - 1 1247.0 0.0 4.542 0.0 24.6 0.0 -4,-5 0.2582 - 7.802 ALTERNATIVE:2 ENSMUSG00000026202 Tuba4a ENSMUST00000186971 ENSMUSP00000140321 TRANSLATION protein_coding start - 2 125.0 10.0 3.235 0.0 114.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026202 Tuba4a ENSMUST00000189131 ENSMUSP00000140970 TRANSLATION protein_coding stop - 3 81.0 1.0 1.75 0.0 59.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026202 Tuba4a ENSMUST00000190717 ENSMUSP00000141097 TRANSLATION protein_coding stop - 3 89.0 5.0 2.08 0.0 70.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026202 Tuba4a ENSMUST00000186758 ENSMUSP00000140552 TRANSLATION protein_coding stop - 3 100.0 5.0 2.41 0.0 86.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026202 Tuba4a ENSMUST00000079464 ENSMUSP00000078429 TRANSLATION protein_coding start - 1 477.0 27.0 5.73 0.0 399.6 0.0 -4,-6 0.056 9 -2.0 MINOR ENSMUSG00000026202 Tuba4a ENSMUST00000187103 - NO_TRANSLATION retained_intron ENSMUSG00000026202 Tuba4a ENSMUST00000188593 ENSMUSP00000140881 TRANSLATION protein_coding start - 5 75.0 6.0 1.66 0.0 67.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026202 Tuba4a ENSMUST00000186213 ENSMUSP00000140657 TRANSLATION protein_coding - CCDS35623.1 1 448.0 27.0 5.73 34.7 399.6 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000025931 Paqr8 ENSMUST00000189400 ENSMUSP00000141054 TRANSLATION protein_coding - CCDS14844.1 1 354.0 0.0 1.0 27.5 173.2 7.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025931 Paqr8 ENSMUST00000167119 ENSMUSP00000128781 TRANSLATION protein_coding - CCDS14844.1 1 354.0 0.0 1.0 27.5 173.2 7.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025931 Paqr8 ENSMUST00000068880 ENSMUSP00000069127 TRANSLATION protein_coding - CCDS14844.1 1 354.0 0.0 1.0 27.5 173.2 7.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025931 Paqr8 ENSMUST00000187651 ENSMUSP00000140913 TRANSLATION protein_coding - CCDS14844.1 5 354.0 0.0 1.0 27.5 173.2 7.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025927 Tfap2b ENSMUST00000187754 ENSMUSP00000140213 TRANSLATION protein_coding - CCDS78553.1 1 453.0 0.0 4.0 3.9 294.5 0.0 -4,-6 0.4772 1 12.548 MINOR ENSMUSG00000025927 Tfap2b ENSMUST00000064976 ENSMUSP00000064488 TRANSLATION protein_coding - CCDS14840.1 1 441.0 0.0 4.0 15.3 294.5 0.0 -4,-2 0.9212 1 14.712 MINOR ENSMUSG00000025927 Tfap2b ENSMUST00000191068 - NO_TRANSLATION retained_intron ENSMUSG00000025927 Tfap2b ENSMUST00000027059 ENSMUSP00000027059 TRANSLATION protein_coding - CCDS14839.1 1 459.0 0.0 4.0 22.1 294.5 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000025927 Tfap2b ENSMUST00000186972 - NO_TRANSLATION retained_intron ENSMUSG00000070942 Il1rl2 ENSMUST00000095020 ENSMUSP00000092630 TRANSLATION protein_coding - CCDS14910.1 1 574.0 0.0 5.1 0.3 226.0 1.0 4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000070942 Il1rl2 ENSMUST00000192551 - NO_TRANSLATION retained_intron ENSMUSG00000070942 Il1rl2 ENSMUST00000194296 ENSMUSP00000142248 TRANSLATION protein_coding - CCDS14910.1 1 574.0 0.0 5.1 0.3 226.0 1.0 4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000070942 Il1rl2 ENSMUST00000193388 ENSMUSP00000141507 TRANSLATION protein_coding stop - 1 166.0 0.0 2.0 0.0 33.8 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000042066 Tmcc2 ENSMUST00000138717 - NO_TRANSLATION retained_intron ENSMUSG00000042066 Tmcc2 ENSMUST00000132435 ENSMUSP00000118844 TRANSLATION protein_coding - CCDS78682.1 1 628.0 0.0 0.0 7.0 583.2 2.0 -4,-1 0.7774 6 2.499 ALTERNATIVE:1 ENSMUSG00000042066 Tmcc2 ENSMUST00000142609 ENSMUSP00000115721 TRANSLATION protein_coding - CCDS78681.1 1 471.0 0.0 0.0 8.2 583.2 2.0 -4,-5 1.0 6 3.0 PRINCIPAL:4 ENSMUSG00000042066 Tmcc2 ENSMUST00000125439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042066 Tmcc2 ENSMUST00000045473 ENSMUSP00000038369 TRANSLATION protein_coding - CCDS15284.1 1 706.0 0.0 0.0 7.8 583.2 2.0 -4,-5 0.6948 7 2.832 ALTERNATIVE:1 ENSMUSG00000042066 Tmcc2 ENSMUST00000136828 ENSMUSP00000159152 TRANSLATION protein_coding - - 3 524.0 0.0 0.0 3.2 583.2 2.0 -4,-2 0.2593 6 0.918 MINOR ENSMUSG00000026418 Tnni1 ENSMUST00000154463 ENSMUSP00000122925 TRANSLATION protein_coding - CCDS48374.1 5 187.0 0.0 4.33 33.1 161.1 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000026418 Tnni1 ENSMUST00000148201 ENSMUSP00000123509 TRANSLATION protein_coding - CCDS48374.1 5 187.0 0.0 4.33 33.1 161.1 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000026418 Tnni1 ENSMUST00000132795 ENSMUSP00000121122 TRANSLATION protein_coding stop - 5 60.0 0.0 1.33 0.0 37.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026418 Tnni1 ENSMUST00000152075 ENSMUSP00000121343 TRANSLATION protein_coding - CCDS48374.1 5 187.0 0.0 4.33 33.1 161.1 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000026418 Tnni1 ENSMUST00000137331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026418 Tnni1 ENSMUST00000129217 ENSMUSP00000119848 TRANSLATION protein_coding start - 2 181.0 0.0 4.33 0.0 161.1 0.0 -4,-7 0.0376 4 -2.0 MINOR ENSMUSG00000026418 Tnni1 ENSMUST00000187830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026418 Tnni1 ENSMUST00000139986 ENSMUSP00000123049 TRANSLATION protein_coding - - 5 171.0 0.0 4.0 0.7 159.4 0.0 -4,-5 0.07 4 11.238 MINOR ENSMUSG00000026418 Tnni1 ENSMUST00000152208 ENSMUSP00000121966 TRANSLATION protein_coding - CCDS48374.1 5 187.0 0.0 4.33 33.1 161.1 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000041670 Rims1 ENSMUST00000164877 ENSMUSP00000131808 TRANSLATION protein_coding - - 1 219.0 3.0 3.8 0.0 65.6 0.0 -4,-2 0.0 6 1.238 MINOR ENSMUSG00000041670 Rims1 ENSMUST00000081544 ENSMUSP00000080259 TRANSLATION protein_coding - - 5 1477.0 11.0 10.8 0.4 200.6 0.0 -4,-7 0.4283 32 14.0 ALTERNATIVE:2 ENSMUSG00000041670 Rims1 ENSMUST00000097809 ENSMUSP00000095418 TRANSLATION protein_coding - - 5 1666.0 11.0 10.8 0.0 200.6 0.0 -4,-7 1.0 32 14.0 PRINCIPAL:2 ENSMUSG00000041670 Rims1 ENSMUST00000097808 ENSMUSP00000095417 TRANSLATION protein_coding - - 5 1641.0 11.0 10.8 0.4 200.6 0.0 -4,-7 0.5121 33 14.0 ALTERNATIVE:2 ENSMUSG00000041670 Rims1 ENSMUST00000115273 ENSMUSP00000110928 TRANSLATION protein_coding - - 5 1613.0 11.0 10.8 0.4 200.6 0.0 -4,-7 0.4695 33 14.0 ALTERNATIVE:2 ENSMUSG00000041670 Rims1 ENSMUST00000239339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041670 Rims1 ENSMUST00000239255 ENSMUSP00000159233 TRANSLATION protein_coding stop - - 129.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025946 Pth2r ENSMUST00000027083 ENSMUSP00000027083 TRANSLATION protein_coding - CCDS15017.1 1 546.0 0.0 8.47 3.1 346.9 6.0 2,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000025946 Pth2r ENSMUST00000140190 ENSMUSP00000114594 TRANSLATION protein_coding stop - 3 174.0 0.0 3.53 0.0 108.9 1.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000026614 Slc30a10 ENSMUST00000061093 ENSMUSP00000053181 TRANSLATION protein_coding - CCDS15599.1 1 470.0 0.0 0.61 1.3 144.5 4.0 1,-3 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000026614 Slc30a10 ENSMUST00000238198 - NO_TRANSLATION retained_intron ENSMUSG00000026614 Slc30a10 ENSMUST00000238677 ENSMUSP00000158739 TRANSLATION nonsense_mediated_decay - - - 215.0 0.0 0.2 0.0 96.4 3.0 1,-3 0.0065 2 -2.0 MINOR ENSMUSG00000041763 Tpp2 ENSMUST00000190401 - NO_TRANSLATION retained_intron ENSMUSG00000041763 Tpp2 ENSMUST00000189388 ENSMUSP00000140562 TRANSLATION nonsense_mediated_decay - - 5 883.0 3.0 10.433 0.0 520.1 0.0 -4,-5 0.0175 36 -2.0 MINOR ENSMUSG00000041763 Tpp2 ENSMUST00000188302 ENSMUSP00000140474 TRANSLATION nonsense_mediated_decay - - 1 607.0 3.0 6.42 0.0 373.7 0.0 -4,-5 0.0004 24 -2.0 MINOR ENSMUSG00000041763 Tpp2 ENSMUST00000087933 ENSMUSP00000085244 TRANSLATION protein_coding - CCDS14926.1 1 1262.0 3.0 10.6205 27.8 631.0 0.0 -4,-5 0.989 56 13.998 ALTERNATIVE:1 ENSMUSG00000041763 Tpp2 ENSMUST00000186441 ENSMUSP00000139592 TRANSLATION protein_coding start/stop - 3 231.0 0.0 2.493 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000041763 Tpp2 ENSMUST00000187115 - NO_TRANSLATION retained_intron ENSMUSG00000041763 Tpp2 ENSMUST00000190207 ENSMUSP00000140313 TRANSLATION protein_coding start - 1 298.0 0.0 -0.5625 0.0 0.0 0.0 -4,-5 0.0021 10 -2.0 MINOR ENSMUSG00000041763 Tpp2 ENSMUST00000188313 ENSMUSP00000139918 TRANSLATION protein_coding - CCDS78577.1 1 1249.0 3.0 11.1205 24.4 631.0 0.0 -4,-5 1.0 57 14.492 PRINCIPAL:3 ENSMUSG00000041763 Tpp2 ENSMUST00000186028 - NO_TRANSLATION retained_intron ENSMUSG00000041763 Tpp2 ENSMUST00000185579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025949 Pikfyve ENSMUST00000186404 - NO_TRANSLATION retained_intron ENSMUSG00000025949 Pikfyve ENSMUST00000213081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025949 Pikfyve ENSMUST00000097707 ENSMUSP00000095314 TRANSLATION protein_coding - CCDS78600.1 1 2097.0 8.0 13.908 6.7 390.9 0.0 -4,-5 0.8665 49 18.164 MINOR ENSMUSG00000025949 Pikfyve ENSMUST00000185317 - NO_TRANSLATION retained_intron ENSMUSG00000025949 Pikfyve ENSMUST00000190847 - NO_TRANSLATION retained_intron ENSMUSG00000025949 Pikfyve ENSMUST00000189925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025949 Pikfyve ENSMUST00000081154 ENSMUSP00000079926 TRANSLATION protein_coding - CCDS35601.1 1 2052.0 8.0 14.8255 6.7 390.9 0.0 -4,-5 1.0 49 20.0 PRINCIPAL:1 ENSMUSG00000025949 Pikfyve ENSMUST00000190058 ENSMUSP00000140204 TRANSLATION nonsense_mediated_decay - - 5 158.0 0.0 0.36 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025949 Pikfyve ENSMUST00000185263 ENSMUSP00000140932 TRANSLATION nonsense_mediated_decay - - 3 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025949 Pikfyve ENSMUST00000188799 - NO_TRANSLATION retained_intron ENSMUSG00000025949 Pikfyve ENSMUST00000187579 - NO_TRANSLATION retained_intron ENSMUSG00000089872 Rps6kc1 ENSMUST00000159066 ENSMUSP00000124558 TRANSLATION protein_coding stop - 3 131.0 0.0 1.9 0.0 51.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000089872 Rps6kc1 ENSMUST00000159624 ENSMUSP00000125010 TRANSLATION nonsense_mediated_decay - - 2 336.0 0.0 2.2 0.0 83.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000089872 Rps6kc1 ENSMUST00000160891 - NO_TRANSLATION retained_intron ENSMUSG00000089872 Rps6kc1 ENSMUST00000160889 ENSMUSP00000123733 TRANSLATION nonsense_mediated_decay start - 1 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000089872 Rps6kc1 ENSMUST00000159367 ENSMUSP00000124383 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 1.2 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000089872 Rps6kc1 ENSMUST00000061611 ENSMUSP00000061769 TRANSLATION protein_coding - - 5 1056.0 0.0 5.08 0.7 197.1 0.0 -4,-6 0.9481 17 12.0 PRINCIPAL:1 ENSMUSG00000089872 Rps6kc1 ENSMUST00000159823 - NO_TRANSLATION retained_intron ENSMUSG00000089872 Rps6kc1 ENSMUST00000162500 - NO_TRANSLATION retained_intron ENSMUSG00000089872 Rps6kc1 ENSMUST00000162692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079330 Lemd1 ENSMUST00000187339 ENSMUSP00000139708 TRANSLATION nonsense_mediated_decay - - 5 70.0 0.0 1.75 0.0 69.0 0.0 -4,-5 0.1227 - -2.0 MINOR ENSMUSG00000079330 Lemd1 ENSMUST00000189086 ENSMUSP00000159620 TRANSLATION protein_coding - - 2 83.0 0.0 1.75 0.0 69.0 0.0 -4,-5 0.0196 - 8.0 ALTERNATIVE:2 ENSMUSG00000079330 Lemd1 ENSMUST00000112357 ENSMUSP00000107976 TRANSLATION protein_coding - CCDS35705.1 1 129.0 0.0 1.75 0.0 69.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000079330 Lemd1 ENSMUST00000185436 ENSMUSP00000140418 TRANSLATION nonsense_mediated_decay - - 1 69.0 0.0 1.75 0.0 69.0 0.0 -4,-5 0.0196 - -2.0 MINOR ENSMUSG00000079330 Lemd1 ENSMUST00000188169 ENSMUSP00000140524 TRANSLATION protein_coding - CCDS83590.1 1 101.0 0.0 1.75 0.0 69.0 0.0 -4,-5 0.2429 - 8.0 ALTERNATIVE:2 ENSMUSG00000079330 Lemd1 ENSMUST00000191418 ENSMUSP00000140193 TRANSLATION protein_coding - CCDS78679.1 2 203.0 0.0 1.75 0.0 69.0 0.0 -4,-5 0.2507 1 8.0 ALTERNATIVE:2 ENSMUSG00000026273 Mterf4 ENSMUST00000112942 ENSMUSP00000108564 TRANSLATION protein_coding - - 2 240.0 0.0 1.8 0.0 51.0 0.0 -2,1 0.0007 - 6.372 MINOR ENSMUSG00000026273 Mterf4 ENSMUST00000152307 - NO_TRANSLATION retained_intron ENSMUSG00000026273 Mterf4 ENSMUST00000112944 ENSMUSP00000108566 TRANSLATION protein_coding - CCDS78655.1 1 303.0 0.0 1.8 0.0 49.6 0.0 -2,1 0.0273 - 6.252 MINOR ENSMUSG00000026273 Mterf4 ENSMUST00000136754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026273 Mterf4 ENSMUST00000027492 ENSMUSP00000027492 TRANSLATION protein_coding - CCDS35671.1 1 346.0 0.0 3.8 0.0 70.0 0.0 -2,1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000067780 Pi15 ENSMUST00000088476 ENSMUSP00000085826 TRANSLATION protein_coding - CCDS48225.1 1 269.0 2.0 4.5 0.0 89.6 0.0 1,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000057173 Rfx8 ENSMUST00000126760 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057173 Rfx8 ENSMUST00000151913 ENSMUSP00000121212 TRANSLATION protein_coding - CCDS48245.1 1 596.0 0.0 1.65 0.4 98.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048775 Serpinb13 ENSMUST00000136766 ENSMUSP00000118572 TRANSLATION nonsense_mediated_decay - - 1 110.0 0.0 1.55 0.0 52.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048775 Serpinb13 ENSMUST00000027564 ENSMUSP00000027564 TRANSLATION protein_coding - CCDS15213.1 1 389.0 0.0 6.4 8.5 384.2 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000115378 Fam237a ENSMUST00000226288 ENSMUSP00000154457 TRANSLATION protein_coding - - - 181.0 0.0 0.8 11.5 0.0 0.0 -3,-4 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000073557 Ppp1r12b ENSMUST00000238280 ENSMUSP00000158804 TRANSLATION protein_coding - - - 186.0 0.0 2.65 22.4 125.0 0.0 -4,-2 1.0 6 4.0 MINOR ENSMUSG00000073557 Ppp1r12b ENSMUST00000156348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073557 Ppp1r12b ENSMUST00000132025 - NO_TRANSLATION retained_intron ENSMUSG00000073557 Ppp1r12b ENSMUST00000045665 ENSMUSP00000047463 TRANSLATION protein_coding - - 5 976.0 0.0 8.275 4.9 241.2 0.0 -4,-2 0.9388 16 12.728 PRINCIPAL:1 ENSMUSG00000073557 Ppp1r12b ENSMUST00000141419 - NO_TRANSLATION retained_intron ENSMUSG00000073557 Ppp1r12b ENSMUST00000137022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073557 Ppp1r12b ENSMUST00000168381 ENSMUSP00000131406 TRANSLATION protein_coding - CCDS35717.1 1 992.0 0.0 7.723 4.2 216.2 0.0 -4,-2 0.466 17 9.996 MINOR ENSMUSG00000073557 Ppp1r12b ENSMUST00000191540 - NO_TRANSLATION retained_intron ENSMUSG00000073557 Ppp1r12b ENSMUST00000146639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073557 Ppp1r12b ENSMUST00000086444 ENSMUSP00000083633 TRANSLATION protein_coding - CCDS35717.1 5 992.0 0.0 7.723 4.2 216.2 0.0 -4,-2 0.466 17 9.996 MINOR ENSMUSG00000073557 Ppp1r12b ENSMUST00000112163 ENSMUSP00000107788 TRANSLATION protein_coding - - 1 105.0 0.0 0.665 0.0 27.6 0.0 -4,-2 0.0 1 0.0 MINOR ENSMUSG00000026009 Icos ENSMUST00000027162 ENSMUSP00000027162 TRANSLATION protein_coding - - 1 223.0 0.0 1.0 0.0 186.8 1.0 2,-3 0.1138 - 8.0 ALTERNATIVE:2 ENSMUSG00000026009 Icos ENSMUST00000102827 ENSMUSP00000099891 TRANSLATION protein_coding - CCDS14994.1 1 200.0 0.0 1.0 3.1 186.8 1.0 2,-3 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000032769 Trpa1 ENSMUST00000041447 ENSMUSP00000043594 TRANSLATION protein_coding - CCDS35516.1 1 1125.0 0.0 18.85 0.8 255.1 6.0 -4,-7 1.0 - 11.538 PRINCIPAL:1 ENSMUSG00000032769 Trpa1 ENSMUST00000235071 ENSMUSP00000157371 TRANSLATION protein_coding - - - 1095.0 0.0 17.85 0.0 262.8 5.0 -4,-7 0.2933 - 10.002 MINOR ENSMUSG00000050217 Lgsn ENSMUST00000062560 ENSMUSP00000059871 TRANSLATION protein_coding - CCDS14859.1 1 563.0 0.0 1.3 1.1 256.4 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000050217 Lgsn ENSMUST00000161773 ENSMUSP00000140063 TRANSLATION protein_coding start - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040423 Rc3h1 ENSMUST00000239200 ENSMUSP00000159278 TRANSLATION nonsense_mediated_decay - - - 257.0 7.0 4.0 0.0 28.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000040423 Rc3h1 ENSMUST00000035911 ENSMUSP00000037178 TRANSLATION protein_coding - - 5 1121.0 11.0 7.0 6.8 49.6 0.0 -4,-6 0.7763 14 19.812 MINOR ENSMUSG00000040423 Rc3h1 ENSMUST00000161609 ENSMUSP00000124871 TRANSLATION protein_coding - CCDS15410.1 1 1130.0 11.0 7.0 10.6 49.6 0.0 -4,-6 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000040423 Rc3h1 ENSMUST00000161708 - NO_TRANSLATION retained_intron ENSMUSG00000042807 Hecw2 ENSMUST00000146850 - NO_TRANSLATION retained_intron ENSMUSG00000042807 Hecw2 ENSMUST00000087659 ENSMUSP00000084942 TRANSLATION protein_coding - CCDS14956.1 5 1578.0 3.0 15.27 5.0 631.0 0.0 -4,0 1.0 18 17.0 PRINCIPAL:1 ENSMUSG00000042807 Hecw2 ENSMUST00000120904 ENSMUSP00000113283 TRANSLATION protein_coding - CCDS14956.1 5 1578.0 3.0 15.27 5.0 631.0 0.0 -4,0 1.0 18 17.0 PRINCIPAL:1 ENSMUSG00000042807 Hecw2 ENSMUST00000150677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042807 Hecw2 ENSMUST00000097741 ENSMUSP00000095348 TRANSLATION protein_coding - CCDS14957.1 1 294.0 3.0 2.55 0.0 246.0 0.0 -4,0 0.0055 2 3.0 MINOR ENSMUSG00000042807 Hecw2 ENSMUST00000152870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045216 Hs6st1 ENSMUST00000088174 ENSMUSP00000085499 TRANSLATION protein_coding - CCDS48237.1 1 411.0 0.0 1.64 4.5 258.2 0.0 -4,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000045216 Hs6st1 ENSMUST00000194670 - NO_TRANSLATION retained_intron ENSMUSG00000055067 Smyd3 ENSMUST00000128302 ENSMUSP00000117410 TRANSLATION protein_coding - CCDS15560.1 1 428.0 26.0 11.25 14.4 98.3 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000055067 Smyd3 ENSMUST00000068437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055067 Smyd3 ENSMUST00000111134 ENSMUSP00000106764 TRANSLATION protein_coding - - 2 182.0 13.0 4.5 0.0 39.6 0.0 -4,-7 0.0 2 2.418 MINOR ENSMUSG00000055067 Smyd3 ENSMUST00000131684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055067 Smyd3 ENSMUST00000129393 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055067 Smyd3 ENSMUST00000194237 ENSMUSP00000141631 TRANSLATION protein_coding - - 2 72.0 5.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000055067 Smyd3 ENSMUST00000125756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033061 Resp18 ENSMUST00000189203 - NO_TRANSLATION retained_intron ENSMUSG00000033061 Resp18 ENSMUST00000039534 ENSMUSP00000043783 TRANSLATION protein_coding - CCDS15069.1 1 175.0 0.0 0.0 2.2 156.0 0.0 2,-2 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000033061 Resp18 ENSMUST00000191283 - NO_TRANSLATION retained_intron ENSMUSG00000033061 Resp18 ENSMUST00000186229 ENSMUSP00000140605 TRANSLATION nonsense_mediated_decay - - 1 120.0 0.0 0.0 0.0 117.3 0.0 2,-2 0.0091 1 -2.0 MINOR ENSMUSG00000026031 Cflar ENSMUST00000164900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026031 Cflar ENSMUST00000097722 ENSMUSP00000095329 TRANSLATION protein_coding - - 5 484.0 0.0 5.15 1.1 208.3 0.0 -4,-5 0.7428 3 9.0 ALTERNATIVE:2 ENSMUSG00000026031 Cflar ENSMUST00000069333 ENSMUSP00000065107 TRANSLATION protein_coding - CCDS14978.1 1 481.0 0.0 5.15 0.4 208.3 0.0 -4,-5 0.7895 3 8.0 PRINCIPAL:4 ENSMUSG00000026031 Cflar ENSMUST00000097723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026031 Cflar ENSMUST00000189858 - NO_TRANSLATION retained_intron ENSMUSG00000026031 Cflar ENSMUST00000114309 ENSMUSP00000109948 TRANSLATION protein_coding - CCDS35582.1 1 215.0 0.0 3.0 0.1 124.9 0.0 -4,-5 0.0128 2 3.698 MINOR ENSMUSG00000026031 Cflar ENSMUST00000149874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026031 Cflar ENSMUST00000156870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026031 Cflar ENSMUST00000123553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026031 Cflar ENSMUST00000140940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026031 Cflar ENSMUST00000124567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026031 Cflar ENSMUST00000114313 ENSMUSP00000109952 TRANSLATION protein_coding - CCDS14978.1 1 481.0 0.0 5.15 0.4 208.3 0.0 -4,-5 0.7895 3 8.0 PRINCIPAL:4 ENSMUSG00000026031 Cflar ENSMUST00000123032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005339 Fcer1a ENSMUST00000049706 ENSMUSP00000056882 TRANSLATION protein_coding - CCDS35788.1 1 250.0 0.0 3.0 0.0 63.5 1.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000005339 Fcer1a ENSMUST00000193017 ENSMUSP00000141932 TRANSLATION protein_coding - - 1 194.0 0.0 2.0 0.0 32.9 1.0 -4,-6 0.0024 - 7.11 MINOR ENSMUSG00000026354 Lct ENSMUST00000162067 - NO_TRANSLATION retained_intron ENSMUSG00000026354 Lct ENSMUST00000073490 ENSMUSP00000073190 TRANSLATION protein_coding - CCDS35698.1 2 1931.0 23.0 8.6 1.4 1809.0 0.0 4,-1 1.0 33 19.0 PRINCIPAL:1 ENSMUSG00000026519 Tmem63a ENSMUST00000162283 ENSMUSP00000125287 TRANSLATION nonsense_mediated_decay - - 3 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026519 Tmem63a ENSMUST00000161942 - NO_TRANSLATION retained_intron ENSMUSG00000026519 Tmem63a ENSMUST00000027800 ENSMUSP00000027800 TRANSLATION protein_coding - CCDS15578.1 1 804.0 0.0 3.59675 7.6 330.3 11.0 -4,-7 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000026519 Tmem63a ENSMUST00000159436 ENSMUSP00000125192 TRANSLATION protein_coding stop - 5 174.0 0.0 0.7 0.0 0.0 5.0 -4,-7 0.0024 1 -2.0 MINOR ENSMUSG00000026519 Tmem63a ENSMUST00000161523 ENSMUSP00000124021 TRANSLATION protein_coding - CCDS15578.1 1 804.0 0.0 3.59675 7.6 330.3 11.0 -4,-7 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000026519 Tmem63a ENSMUST00000160536 ENSMUSP00000124860 TRANSLATION protein_coding stop - 5 70.0 0.0 0.0 0.0 0.0 2.0 -4,-6 0.0005 - -2.0 MINOR ENSMUSG00000026519 Tmem63a ENSMUST00000161847 ENSMUSP00000124937 TRANSLATION protein_coding stop - 2 102.0 0.0 0.0 0.0 0.0 4.0 -4,-7 0.0024 1 -2.0 MINOR ENSMUSG00000026519 Tmem63a ENSMUST00000160508 ENSMUSP00000124973 TRANSLATION protein_coding stop - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000073676 Hspe1 ENSMUST00000134628 - NO_TRANSLATION retained_intron ENSMUSG00000073676 Hspe1 ENSMUST00000075242 ENSMUSP00000074724 TRANSLATION protein_coding - CCDS35570.1 1 102.0 0.0 2.5 24.8 105.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000115958 Gm28040 ENSMUST00000194044 ENSMUSP00000141501 TRANSLATION protein_coding - CCDS48362.1 2 126.0 0.0 0.0 0.8 114.7 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115958 Gm28040 ENSMUST00000193888 ENSMUSP00000142234 TRANSLATION protein_coding - CCDS48362.1 2 126.0 0.0 0.0 0.8 114.7 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115958 Gm28040 ENSMUST00000195286 ENSMUSP00000142264 TRANSLATION protein_coding - CCDS48362.1 1 126.0 0.0 0.0 0.8 114.7 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000032487 Ptgs2 ENSMUST00000035065 ENSMUSP00000035065 TRANSLATION protein_coding - CCDS15353.1 1 604.0 0.0 9.33 11.7 182.7 0.0 3,-2 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000032487 Ptgs2 ENSMUST00000190784 ENSMUSP00000139904 TRANSLATION protein_coding stop - 3 62.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073725 Lmbrd1 ENSMUST00000186096 ENSMUSP00000140911 TRANSLATION protein_coding - - 2 161.0 0.0 0.0 0.0 52.1 6.0 -1,-5 0.0048 - 0.0 MINOR ENSMUSG00000073725 Lmbrd1 ENSMUST00000191471 ENSMUSP00000140783 TRANSLATION protein_coding - CCDS35528.1 1 537.0 0.0 0.0 0.4 79.8 11.0 -1,-5 0.4023 1 0.0 ALTERNATIVE:2 ENSMUSG00000073725 Lmbrd1 ENSMUST00000186190 ENSMUSP00000139893 TRANSLATION protein_coding stop - 3 143.0 0.0 0.0 0.0 31.5 2.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000073725 Lmbrd1 ENSMUST00000187468 - NO_TRANSLATION retained_intron ENSMUSG00000073725 Lmbrd1 ENSMUST00000190195 ENSMUSP00000140516 TRANSLATION protein_coding start - 2 143.0 0.0 0.0 0.0 0.0 5.0 -1,-5 0.0075 - -2.0 MINOR ENSMUSG00000073725 Lmbrd1 ENSMUST00000095062 ENSMUSP00000092672 TRANSLATION protein_coding - CCDS78556.1 1 467.0 0.0 0.0 2.7 55.9 9.0 -4,-7 0.9206 1 1.0 PRINCIPAL:2 ENSMUSG00000041396 Mettl18 ENSMUST00000111490 ENSMUSP00000107116 TRANSLATION protein_coding - CCDS15431.1 1 362.0 17.0 0.5 0.1 22.1 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000041396 Mettl18 ENSMUST00000045694 ENSMUSP00000048636 TRANSLATION protein_coding - CCDS15431.1 1 362.0 17.0 0.5 0.1 22.1 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000053161 Daw1 ENSMUST00000133079 - NO_TRANSLATION retained_intron ENSMUSG00000053161 Daw1 ENSMUST00000065436 ENSMUSP00000067102 TRANSLATION protein_coding - CCDS15103.1 1 310.0 0.0 8.74 0.0 138.1 0.0 -4,-5 0.0126 - 0.228 MINOR ENSMUSG00000053161 Daw1 ENSMUST00000149342 ENSMUSP00000117796 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053161 Daw1 ENSMUST00000113436 ENSMUSP00000109063 TRANSLATION protein_coding - - 1 356.0 0.0 8.8389 0.0 119.8 0.0 -4,-5 0.0 - 0.198 MINOR ENSMUSG00000053161 Daw1 ENSMUST00000065403 ENSMUSP00000067583 TRANSLATION protein_coding - - 5 415.0 0.0 11.74 19.9 234.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036962 Cfap221 ENSMUST00000174370 ENSMUSP00000134576 TRANSLATION protein_coding - CCDS48340.1 5 836.0 0.0 5.75 2.2 0.0 0.0 -4,-5 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000036962 Cfap221 ENSMUST00000174458 ENSMUSP00000134719 TRANSLATION protein_coding stop - 5 178.0 0.0 3.75 0.0 0.0 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000036962 Cfap221 ENSMUST00000037840 ENSMUSP00000037703 TRANSLATION protein_coding - CCDS48340.1 1 836.0 0.0 5.75 2.2 0.0 0.0 -4,-5 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000026683 Nuf2 ENSMUST00000028000 ENSMUSP00000028000 TRANSLATION protein_coding - CCDS15463.1 1 463.0 0.0 4.75 10.0 119.0 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000026683 Nuf2 ENSMUST00000192248 ENSMUSP00000141427 TRANSLATION protein_coding - - 1 296.0 0.0 4.75 0.0 119.0 0.0 -4,-6 0.0177 2 12.0 MINOR ENSMUSG00000026683 Nuf2 ENSMUST00000111368 ENSMUSP00000106999 TRANSLATION protein_coding - CCDS15463.1 1 463.0 0.0 4.75 10.0 119.0 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000026683 Nuf2 ENSMUST00000194831 - NO_TRANSLATION retained_intron ENSMUSG00000026683 Nuf2 ENSMUST00000195342 ENSMUSP00000141319 TRANSLATION protein_coding start/stop - 5 171.0 0.0 1.0 0.0 36.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000079440 Alpi ENSMUST00000113270 ENSMUSP00000108895 TRANSLATION protein_coding - CCDS35650.1 1 554.0 12.0 9.75 0.0 598.8 0.0 1,-3 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000041907 Gpr45 ENSMUST00000188621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041907 Gpr45 ENSMUST00000179766 ENSMUSP00000135986 TRANSLATION protein_coding - CCDS14919.1 1 373.0 0.0 0.32 10.5 171.1 6.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000041907 Gpr45 ENSMUST00000114761 ENSMUSP00000110409 TRANSLATION protein_coding - CCDS14919.1 - 373.0 0.0 0.32 10.5 171.1 6.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000041907 Gpr45 ENSMUST00000179655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041907 Gpr45 ENSMUST00000187998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043019 Edem3 ENSMUST00000187951 ENSMUSP00000140775 TRANSLATION protein_coding - CCDS78701.1 1 913.0 0.0 8.98 2.1 430.4 0.0 -2,-5 0.5851 13 6.354 MINOR ENSMUSG00000043019 Edem3 ENSMUST00000059498 ENSMUSP00000058941 TRANSLATION protein_coding - CCDS35736.1 1 931.0 0.0 8.98 7.2 430.4 0.0 -2,-5 1.0 13 8.0 PRINCIPAL:2 ENSMUSG00000043019 Edem3 ENSMUST00000191070 ENSMUSP00000140234 TRANSLATION protein_coding - CCDS78702.1 1 917.0 0.0 8.98 2.1 430.4 0.0 -2,-5 0.5915 13 6.354 MINOR ENSMUSG00000043019 Edem3 ENSMUST00000188145 ENSMUSP00000140443 TRANSLATION protein_coding - - 5 947.0 0.0 8.98 4.2 430.4 0.0 -2,-5 0.6537 13 7.032 ALTERNATIVE:2 ENSMUSG00000026492 Tfb2m ENSMUST00000150778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026492 Tfb2m ENSMUST00000027769 ENSMUSP00000027769 TRANSLATION protein_coding - CCDS15561.1 1 396.0 0.0 4.88 2.6 0.0 0.0 -3,1 1.0 5 7.0 PRINCIPAL:1 ENSMUSG00000026492 Tfb2m ENSMUST00000129982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026492 Tfb2m ENSMUST00000129009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026492 Tfb2m ENSMUST00000139993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072258 Taf1a ENSMUST00000192076 ENSMUSP00000142213 TRANSLATION protein_coding - - 5 453.0 0.0 8.75 4.3 436.8 0.0 -4,-5 0.9 1 14.0 PRINCIPAL:1 ENSMUSG00000054976 Nyap2 ENSMUST00000137862 ENSMUSP00000120767 TRANSLATION protein_coding - - 1 650.0 0.0 1.0 5.6 621.6 0.0 -4,-5 0.6421 12 7.958 MINOR ENSMUSG00000054976 Nyap2 ENSMUST00000113494 ENSMUSP00000109122 TRANSLATION protein_coding - - 1 650.0 0.0 1.0 5.6 621.6 0.0 -4,-5 0.6421 12 7.958 MINOR ENSMUSG00000054976 Nyap2 ENSMUST00000068275 ENSMUSP00000065468 TRANSLATION protein_coding - - 1 737.0 0.0 1.0 0.0 567.8 0.0 -4,-5 0.0815 9 6.0 MINOR ENSMUSG00000054976 Nyap2 ENSMUST00000123720 ENSMUSP00000117661 TRANSLATION protein_coding - - 1 682.0 0.0 1.0 0.1 596.1 0.0 -4,-5 0.0801 12 6.0 MINOR ENSMUSG00000054976 Nyap2 ENSMUST00000123285 ENSMUSP00000122935 TRANSLATION protein_coding - - 1 716.0 0.0 1.0 5.7 791.9 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000000544 Gpa33 ENSMUST00000027847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000544 Gpa33 ENSMUST00000060833 ENSMUSP00000060147 TRANSLATION protein_coding - CCDS15447.1 1 319.0 0.0 6.0 0.0 107.7 1.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000000544 Gpa33 ENSMUST00000166860 ENSMUSP00000125903 TRANSLATION protein_coding - CCDS15447.1 1 319.0 0.0 6.0 0.0 107.7 1.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000000544 Gpa33 ENSMUST00000166159 ENSMUSP00000132753 TRANSLATION protein_coding stop - 5 36.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026399 Cd55 ENSMUST00000027650 ENSMUSP00000027650 TRANSLATION protein_coding - CCDS15256.1 1 390.0 0.0 5.45 0.1 165.6 0.0 3,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000026399 Cd55 ENSMUST00000122830 - NO_TRANSLATION retained_intron ENSMUSG00000026399 Cd55 ENSMUST00000133057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026399 Cd55 ENSMUST00000140725 - NO_TRANSLATION retained_intron ENSMUSG00000026399 Cd55 ENSMUST00000140400 ENSMUSP00000122294 TRANSLATION protein_coding start - 2 197.0 0.0 0.7 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026043 Col3a1 ENSMUST00000087883 ENSMUSP00000085192 TRANSLATION protein_coding - CCDS35554.1 1 1464.0 0.0 32.18 7.1 592.7 0.0 4,-1 1.0 32 14.0 PRINCIPAL:1 ENSMUSG00000026043 Col3a1 ENSMUST00000123204 - NO_TRANSLATION retained_intron ENSMUSG00000026043 Col3a1 ENSMUST00000129611 - NO_TRANSLATION retained_intron ENSMUSG00000026043 Col3a1 ENSMUST00000185687 ENSMUSP00000139894 TRANSLATION protein_coding start/stop - 5 195.0 0.0 5.246 0.0 65.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026043 Col3a1 ENSMUST00000186021 ENSMUSP00000139802 TRANSLATION protein_coding start/stop - 3 245.0 0.0 4.03 0.0 268.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026043 Col3a1 ENSMUST00000190943 - NO_TRANSLATION retained_intron ENSMUSG00000026043 Col3a1 ENSMUST00000189818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000117310 Ptp4a1 ENSMUST00000076587 ENSMUSP00000110861 TRANSLATION protein_coding - - 1 43.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000117310 Ptp4a1 ENSMUST00000233506 ENSMUSP00000156424 TRANSLATION protein_coding - - - 44.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000117310 Ptp4a1 ENSMUST00000238874 ENSMUSP00000159162 TRANSLATION protein_coding - - - 35.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0006 - 0.0 MINOR ENSMUSG00000117310 Ptp4a1 ENSMUST00000027232 ENSMUSP00000027232 TRANSLATION protein_coding - CCDS14858.1 1 173.0 10.0 4.75 36.9 33.5 0.0 -4,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000063659 Zbtb18 ENSMUST00000194269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063659 Zbtb18 ENSMUST00000193480 ENSMUSP00000141663 TRANSLATION protein_coding - - 1 236.0 0.0 2.91 1.0 99.4 0.0 -4,-5 0.0129 3 4.998 MINOR ENSMUSG00000063659 Zbtb18 ENSMUST00000192699 ENSMUSP00000141673 TRANSLATION protein_coding stop - 5 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0068 - -2.0 MINOR ENSMUSG00000063659 Zbtb18 ENSMUST00000195549 ENSMUSP00000142073 TRANSLATION protein_coding stop - 3 128.0 0.0 2.1 0.0 99.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063659 Zbtb18 ENSMUST00000195388 ENSMUSP00000141694 TRANSLATION protein_coding stop - 5 161.0 0.0 2.91 0.0 99.4 0.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000063659 Zbtb18 ENSMUST00000193440 ENSMUSP00000141337 TRANSLATION protein_coding stop - 5 138.0 0.0 2.43 0.0 99.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063659 Zbtb18 ENSMUST00000195002 ENSMUSP00000142124 TRANSLATION protein_coding stop - 1 45.0 0.0 1.5 0.0 35.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063659 Zbtb18 ENSMUST00000077225 ENSMUSP00000076463 TRANSLATION protein_coding - CCDS15553.1 - 522.0 15.0 3.41 19.5 177.5 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:4 ENSMUSG00000063659 Zbtb18 ENSMUST00000194319 ENSMUSP00000141901 TRANSLATION protein_coding stop - 5 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063659 Zbtb18 ENSMUST00000195612 ENSMUSP00000141724 TRANSLATION protein_coding - CCDS15553.1 1 522.0 15.0 3.41 19.5 177.5 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:4 ENSMUSG00000063659 Zbtb18 ENSMUST00000192851 ENSMUSP00000142256 TRANSLATION protein_coding stop - 5 228.0 0.0 2.91 0.0 99.4 0.0 -4,-5 0.0002 3 -2.0 MINOR ENSMUSG00000063659 Zbtb18 ENSMUST00000094276 ENSMUSP00000091831 TRANSLATION protein_coding - CCDS35800.1 2 531.0 15.0 3.41 19.0 177.5 0.0 -4,-5 0.9782 5 17.892 ALTERNATIVE:1 ENSMUSG00000000817 Fasl ENSMUST00000193648 ENSMUSP00000141422 TRANSLATION protein_coding - - 1 69.0 0.0 1.0 0.0 55.8 0.0 -4,-5 0.0 - 4.464 MINOR ENSMUSG00000000817 Fasl ENSMUST00000000834 ENSMUSP00000000834 TRANSLATION protein_coding - CCDS15418.1 1 279.0 0.0 2.5 9.9 121.4 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067750 Khdc1a ENSMUST00000088407 ENSMUSP00000085749 TRANSLATION protein_coding - CCDS14848.1 1 166.0 0.0 2.5 0.0 79.5 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026589 Sec16b ENSMUST00000086130 ENSMUSP00000083300 TRANSLATION protein_coding - CCDS15400.1 1 1051.0 0.0 0.478 0.1 33.9 0.0 -4,-6 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000026589 Sec16b ENSMUST00000146873 ENSMUSP00000119359 TRANSLATION protein_coding start - 5 699.0 0.0 0.478 0.0 33.9 0.0 -4,-5 0.0928 5 -2.0 MINOR ENSMUSG00000026589 Sec16b ENSMUST00000027881 ENSMUSP00000027881 TRANSLATION protein_coding - CCDS15400.1 1 1051.0 0.0 0.478 0.1 33.9 0.0 -4,-6 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000026589 Sec16b ENSMUST00000155665 - NO_TRANSLATION retained_intron ENSMUSG00000026589 Sec16b ENSMUST00000111700 ENSMUSP00000107329 TRANSLATION protein_coding - CCDS15400.1 1 1051.0 0.0 0.478 0.1 33.9 0.0 -4,-6 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000055547 Apobec4 ENSMUST00000068875 ENSMUSP00000069723 TRANSLATION protein_coding - CCDS35738.1 1 374.0 3.0 0.6 0.0 89.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026070 Il18r1 ENSMUST00000108044 ENSMUSP00000103679 TRANSLATION protein_coding - CCDS35549.1 5 537.0 0.0 6.27 7.1 154.6 2.0 -1,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026070 Il18r1 ENSMUST00000193391 ENSMUSP00000141695 TRANSLATION protein_coding - CCDS48247.1 1 372.0 0.0 5.15 0.3 29.1 2.0 -1,-4 0.0234 - 3.762 MINOR ENSMUSG00000026070 Il18r1 ENSMUST00000167723 ENSMUSP00000128277 TRANSLATION protein_coding - CCDS48247.1 1 372.0 0.0 5.15 0.3 29.1 2.0 -1,-4 0.0234 - 3.762 MINOR ENSMUSG00000026070 Il18r1 ENSMUST00000193793 ENSMUSP00000141464 TRANSLATION protein_coding - - 1 267.0 0.0 4.05 0.0 29.1 0.0 -1,-4 0.0 - 1.56 MINOR ENSMUSG00000056268 Dennd1b ENSMUST00000168527 ENSMUSP00000127580 TRANSLATION protein_coding - CCDS48384.1 5 766.0 0.0 11.58 0.4 257.0 0.0 -4,-7 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000056268 Dennd1b ENSMUST00000200429 ENSMUSP00000143783 TRANSLATION nonsense_mediated_decay - - 5 352.0 0.0 9.58 0.0 219.7 0.0 -4,-7 0.0183 4 -2.0 MINOR ENSMUSG00000056268 Dennd1b ENSMUST00000198418 - NO_TRANSLATION retained_intron ENSMUSG00000056268 Dennd1b ENSMUST00000196816 - NO_TRANSLATION retained_intron ENSMUSG00000056268 Dennd1b ENSMUST00000199634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056268 Dennd1b ENSMUST00000094505 ENSMUSP00000092082 TRANSLATION protein_coding - CCDS35728.1 1 691.0 0.0 9.0 0.0 205.0 0.0 -4,-6 0.0213 13 3.72 MINOR ENSMUSG00000056268 Dennd1b ENSMUST00000200533 ENSMUSP00000142738 TRANSLATION protein_coding - - 1 232.0 0.0 6.38 0.0 112.8 0.0 -4,-7 0.0002 2 0.0 MINOR ENSMUSG00000056268 Dennd1b ENSMUST00000198759 ENSMUSP00000143691 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 1.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056268 Dennd1b ENSMUST00000200295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026272 Agxt ENSMUST00000027491 ENSMUSP00000027491 TRANSLATION protein_coding - CCDS15184.1 1 414.0 12.0 10.0 7.7 211.5 0.0 -4,0 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000026272 Agxt ENSMUST00000191039 - NO_TRANSLATION retained_intron ENSMUSG00000026272 Agxt ENSMUST00000190603 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026134 Prim2 ENSMUST00000027312 ENSMUSP00000027312 TRANSLATION protein_coding - CCDS14862.1 1 505.0 12.0 11.35 16.7 321.4 0.0 -4,-1 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000026134 Prim2 ENSMUST00000189552 - NO_TRANSLATION retained_intron ENSMUSG00000026134 Prim2 ENSMUST00000187353 - NO_TRANSLATION retained_intron ENSMUSG00000001305 Rrp15 ENSMUST00000162336 - NO_TRANSLATION retained_intron ENSMUSG00000001305 Rrp15 ENSMUST00000001339 ENSMUSP00000001339 TRANSLATION protein_coding - CCDS15602.1 1 281.0 0.0 2.8 1.4 109.6 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000037138 Aff3 ENSMUST00000134963 ENSMUSP00000116289 TRANSLATION nonsense_mediated_decay - - 3 53.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037138 Aff3 ENSMUST00000027250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037138 Aff3 ENSMUST00000095027 ENSMUSP00000092637 TRANSLATION protein_coding - CCDS69884.1 5 1229.0 0.0 5.125 0.3 1034.5 0.0 -4,-5 0.9283 5 6.0 ALTERNATIVE:2 ENSMUSG00000037138 Aff3 ENSMUST00000039827 ENSMUSP00000044128 TRANSLATION protein_coding - - 5 1228.0 0.0 5.125 0.3 1033.0 0.0 -4,-5 0.5038 5 6.0 ALTERNATIVE:2 ENSMUSG00000037138 Aff3 ENSMUST00000238906 ENSMUSP00000159147 TRANSLATION protein_coding - - - 1254.0 0.0 5.125 0.0 1034.5 0.0 -4,-6 1.0 5 6.0 PRINCIPAL:4 ENSMUSG00000037138 Aff3 ENSMUST00000136641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026159 Agfg1 ENSMUST00000190046 ENSMUSP00000140473 TRANSLATION protein_coding start - 5 580.0 4.0 3.6 0.0 98.5 0.0 -4,-5 0.037 12 -2.0 MINOR ENSMUSG00000026159 Agfg1 ENSMUST00000190052 ENSMUSP00000141157 TRANSLATION protein_coding - CCDS83564.1 5 537.0 4.0 3.6 7.7 98.5 0.0 -4,-5 0.8511 12 13.845 MINOR ENSMUSG00000026159 Agfg1 ENSMUST00000187899 ENSMUSP00000139503 TRANSLATION protein_coding - - 5 521.0 4.0 3.6 10.7 98.5 0.0 -4,-5 0.7598 12 14.67 ALTERNATIVE:1 ENSMUSG00000026159 Agfg1 ENSMUST00000186043 ENSMUSP00000140678 TRANSLATION protein_coding stop - 5 200.0 0.0 2.1 0.0 32.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026159 Agfg1 ENSMUST00000063380 ENSMUSP00000070250 TRANSLATION protein_coding - - 1 540.0 4.0 3.6 0.0 98.5 0.0 -4,-5 0.0362 11 12.0 MINOR ENSMUSG00000026159 Agfg1 ENSMUST00000186302 ENSMUSP00000140785 TRANSLATION protein_coding - - 5 561.0 4.0 3.6 11.9 98.5 0.0 -4,-5 0.8384 12 15.0 ALTERNATIVE:1 ENSMUSG00000026159 Agfg1 ENSMUST00000189220 ENSMUSP00000140170 TRANSLATION protein_coding - CCDS15100.1 1 559.0 4.0 3.6 11.9 98.5 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:4 ENSMUSG00000026159 Agfg1 ENSMUST00000113444 ENSMUSP00000109071 TRANSLATION protein_coding - CCDS78634.1 1 530.0 4.0 3.6 0.0 98.5 0.0 -4,-5 0.1516 12 12.0 MINOR ENSMUSG00000101904 Gm29427 ENSMUST00000188520 ENSMUSP00000140786 TRANSLATION nonsense_mediated_decay,RT - - 1 374.0 20.0 8.0 0.0 347.0 0.0 -4,-5 0.7959 - -2.0 PRINCIPAL:1 ENSMUSG00000053024 Cntn2 ENSMUST00000188065 ENSMUSP00000140306 TRANSLATION nonsense_mediated_decay start - 1 544.0 0.0 10.25 0.0 192.8 0.0 -4,-6 0.0 13 -2.0 MINOR ENSMUSG00000053024 Cntn2 ENSMUST00000186487 - NO_TRANSLATION retained_intron ENSMUSG00000053024 Cntn2 ENSMUST00000188943 ENSMUSP00000139795 TRANSLATION protein_coding stop - 2 102.0 0.0 1.75 0.0 0.0 0.0 1,-2 0.0027 - -2.0 MINOR ENSMUSG00000053024 Cntn2 ENSMUST00000188143 - NO_TRANSLATION retained_intron ENSMUSG00000053024 Cntn2 ENSMUST00000189528 ENSMUSP00000141179 TRANSLATION nonsense_mediated_decay start - 1 34.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000053024 Cntn2 ENSMUST00000190601 - NO_TRANSLATION retained_intron ENSMUSG00000053024 Cntn2 ENSMUST00000186530 ENSMUSP00000139897 TRANSLATION protein_coding stop - 3 25.0 0.0 0.0 0.0 0.0 0.0 -1,-6 0.0 - -2.0 MINOR ENSMUSG00000053024 Cntn2 ENSMUST00000086521 ENSMUSP00000083707 TRANSLATION protein_coding - CCDS15288.1 1 1040.0 0.0 21.0 3.9 383.7 0.0 1,-2 1.0 26 13.0 PRINCIPAL:1 ENSMUSG00000041577 Prelp ENSMUST00000127583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041577 Prelp ENSMUST00000048432 ENSMUSP00000048803 TRANSLATION protein_coding - CCDS15300.1 1 378.0 0.0 1.33 4.1 118.8 0.0 4,-1 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000038776 Ephx1 ENSMUST00000111068 ENSMUSP00000106697 TRANSLATION protein_coding - CCDS83653.1 1 441.0 0.0 8.33 0.0 115.0 0.0 -2,-5 0.1196 18 10.998 MINOR ENSMUSG00000038776 Ephx1 ENSMUST00000036928 ENSMUSP00000047551 TRANSLATION protein_coding - CCDS15579.1 1 455.0 0.0 8.83 10.5 115.0 0.0 -2,-5 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000038776 Ephx1 ENSMUST00000147585 ENSMUSP00000122671 TRANSLATION protein_coding stop - 3 130.0 0.0 2.33 0.0 83.6 0.0 -2,-5 0.0 6 -2.0 MINOR ENSMUSG00000038776 Ephx1 ENSMUST00000154133 ENSMUSP00000114363 TRANSLATION protein_coding start/stop - 5 247.0 0.0 5.58 0.0 92.8 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000016524 Il19 ENSMUST00000187410 ENSMUSP00000139406 TRANSLATION protein_coding - CCDS15264.1 5 176.0 0.0 4.43 8.1 28.7 1.0 0,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000016524 Il19 ENSMUST00000112465 ENSMUSP00000108084 TRANSLATION protein_coding - CCDS15264.1 1 176.0 0.0 4.43 8.1 28.7 1.0 0,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000016524 Il19 ENSMUST00000016668 ENSMUSP00000016668 TRANSLATION protein_coding - CCDS15264.1 1 176.0 0.0 4.43 8.1 28.7 1.0 0,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000016524 Il19 ENSMUST00000187916 ENSMUSP00000141175 TRANSLATION protein_coding - - 2 101.0 0.0 2.75 0.0 0.0 0.0 -4,-7 0.0 - 2.64 MINOR ENSMUSG00000026576 Atp1b1 ENSMUST00000192522 - NO_TRANSLATION retained_intron ENSMUSG00000026576 Atp1b1 ENSMUST00000193980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026576 Atp1b1 ENSMUST00000193367 ENSMUSP00000141777 TRANSLATION protein_coding stop - 2 132.0 0.0 2.75 0.0 127.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000026576 Atp1b1 ENSMUST00000027863 ENSMUSP00000027863 TRANSLATION protein_coding - CCDS35755.1 1 304.0 0.0 6.1 25.1 328.3 0.0 -4,-7 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000066595 Flvcr1 ENSMUST00000194917 - NO_TRANSLATION retained_intron ENSMUSG00000066595 Flvcr1 ENSMUST00000194589 - NO_TRANSLATION retained_intron ENSMUSG00000066595 Flvcr1 ENSMUST00000192666 ENSMUSP00000141985 TRANSLATION nonsense_mediated_decay start - 1 246.0 0.0 0.0 0.0 35.7 4.0 -4,-7 0.0069 1 -2.0 MINOR ENSMUSG00000066595 Flvcr1 ENSMUST00000191946 ENSMUSP00000141578 TRANSLATION protein_coding - CCDS83664.1 - 246.0 0.0 0.0 0.0 36.3 4.0 -4,-5 0.0573 1 2.352 MINOR ENSMUSG00000066595 Flvcr1 ENSMUST00000085635 ENSMUSP00000082777 TRANSLATION protein_coding - CCDS35823.1 1 560.0 0.0 0.0 0.0 92.7 10.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000066595 Flvcr1 ENSMUST00000193399 - NO_TRANSLATION retained_intron ENSMUSG00000026315 Serpinb8 ENSMUST00000112706 ENSMUSP00000108326 TRANSLATION protein_coding - CCDS15220.1 1 374.0 0.0 7.55 11.0 434.7 1.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000026315 Serpinb8 ENSMUST00000123086 ENSMUSP00000122907 TRANSLATION protein_coding start - 5 41.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026315 Serpinb8 ENSMUST00000151283 - NO_TRANSLATION retained_intron ENSMUSG00000026315 Serpinb8 ENSMUST00000000514 ENSMUSP00000000514 TRANSLATION protein_coding - CCDS15220.1 1 374.0 0.0 7.55 11.0 434.7 1.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000026274 Pask ENSMUST00000128253 ENSMUSP00000120104 TRANSLATION protein_coding stop - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 1 -2.0 MINOR ENSMUSG00000026274 Pask ENSMUST00000148355 - NO_TRANSLATION retained_intron ENSMUSG00000026274 Pask ENSMUST00000133886 - NO_TRANSLATION retained_intron ENSMUSG00000026274 Pask ENSMUST00000139028 - NO_TRANSLATION retained_intron ENSMUSG00000026274 Pask ENSMUST00000128655 - NO_TRANSLATION retained_intron ENSMUSG00000026274 Pask ENSMUST00000027493 ENSMUSP00000027493 TRANSLATION protein_coding - CCDS15186.1 1 1383.0 20.0 8.2 0.0 250.6 0.0 -4,-5 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000044783 Hjurp ENSMUST00000126739 - NO_TRANSLATION retained_intron ENSMUSG00000044783 Hjurp ENSMUST00000065420 ENSMUSP00000070419 TRANSLATION protein_coding - - 1 591.0 0.0 2.25 0.0 347.1 0.0 -4,-1 0.815 4 8.0 PRINCIPAL:2 ENSMUSG00000044783 Hjurp ENSMUST00000127446 ENSMUSP00000118659 TRANSLATION protein_coding start - 1 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044783 Hjurp ENSMUST00000147393 ENSMUSP00000120753 TRANSLATION protein_coding - - 1 89.0 0.0 2.25 0.0 33.9 0.0 -4,-2 0.0611 1 6.2 MINOR ENSMUSG00000044783 Hjurp ENSMUST00000128532 - NO_TRANSLATION retained_intron ENSMUSG00000044783 Hjurp ENSMUST00000054674 ENSMUSP00000054263 TRANSLATION protein_coding - CCDS15144.1 1 667.0 0.0 2.25 0.0 347.1 0.0 -4,-2 0.54 4 8.0 ALTERNATIVE:2 ENSMUSG00000044783 Hjurp ENSMUST00000148384 - NO_TRANSLATION retained_intron ENSMUSG00000041926 Rnpep ENSMUST00000130069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041926 Rnpep ENSMUST00000189615 - NO_TRANSLATION retained_intron ENSMUSG00000041926 Rnpep ENSMUST00000152169 - NO_TRANSLATION retained_intron ENSMUSG00000041926 Rnpep ENSMUST00000188053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041926 Rnpep ENSMUST00000074357 ENSMUSP00000073962 TRANSLATION protein_coding - CCDS48373.1 1 611.0 15.0 10.0 0.0 273.0 0.0 -4,-1 0.02 25 14.532 MINOR ENSMUSG00000041926 Rnpep ENSMUST00000190632 - NO_TRANSLATION retained_intron ENSMUSG00000041926 Rnpep ENSMUST00000077340 ENSMUSP00000076564 TRANSLATION protein_coding - CCDS15317.1 1 650.0 15.0 11.0 6.2 297.5 0.0 -4,-1 1.0 27 20.0 PRINCIPAL:1 ENSMUSG00000041926 Rnpep ENSMUST00000141234 - NO_TRANSLATION retained_intron ENSMUSG00000041926 Rnpep ENSMUST00000141092 - NO_TRANSLATION retained_intron ENSMUSG00000091017 Garin4 ENSMUST00000171798 ENSMUSP00000127945 TRANSLATION protein_coding - CCDS48487.1 - 585.0 0.0 0.0 0.0 94.6 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000026630 Batf3 ENSMUST00000192268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026630 Batf3 ENSMUST00000027943 ENSMUSP00000027943 TRANSLATION protein_coding - CCDS15615.1 1 118.0 0.0 2.0 15.3 41.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026630 Batf3 ENSMUST00000193771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026630 Batf3 ENSMUST00000194833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026630 Batf3 ENSMUST00000191621 - NO_TRANSLATION retained_intron ENSMUSG00000006542 Prkag3 ENSMUST00000162093 ENSMUSP00000125242 TRANSLATION nonsense_mediated_decay - - 5 268.0 5.0 1.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006542 Prkag3 ENSMUST00000160732 ENSMUSP00000125344 TRANSLATION nonsense_mediated_decay - CCDS15055.1 1 489.0 41.0 6.51 5.8 104.7 0.0 -4,-5 1.0 4 -2.0 MINOR ENSMUSG00000006542 Prkag3 ENSMUST00000081636 ENSMUSP00000080342 TRANSLATION protein_coding - CCDS15055.1 1 489.0 41.0 6.51 5.8 104.7 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:2 ENSMUSG00000006542 Prkag3 ENSMUST00000113672 ENSMUSP00000109302 TRANSLATION protein_coding - - 1 464.0 41.0 6.51 4.5 104.7 0.0 -4,-5 0.6615 4 15.458 ALTERNATIVE:1 ENSMUSG00000006542 Prkag3 ENSMUST00000188073 ENSMUSP00000139909 TRANSLATION protein_coding - CCDS15055.1 1 489.0 41.0 6.51 5.8 104.7 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:2 ENSMUSG00000006542 Prkag3 ENSMUST00000159728 ENSMUSP00000124979 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041642 Kif21b ENSMUST00000165333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041642 Kif21b ENSMUST00000075164 ENSMUSP00000074661 TRANSLATION protein_coding - CCDS15324.1 2 1624.0 11.0 12.74 6.2 403.3 0.0 -4,-6 1.0 20 19.766 PRINCIPAL:1 ENSMUSG00000041642 Kif21b ENSMUST00000171381 ENSMUSP00000131815 TRANSLATION nonsense_mediated_decay start - 5 78.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041642 Kif21b ENSMUST00000122892 - NO_TRANSLATION retained_intron ENSMUSG00000041642 Kif21b ENSMUST00000127624 - NO_TRANSLATION retained_intron ENSMUSG00000041642 Kif21b ENSMUST00000130864 ENSMUSP00000114297 TRANSLATION nonsense_mediated_decay - - 1 1639.0 11.0 12.64 4.2 407.2 0.0 -4,-6 0.6401 20 -2.0 MINOR ENSMUSG00000037216 Lipt1 ENSMUST00000128085 ENSMUSP00000119243 TRANSLATION protein_coding stop - 3 159.0 11.0 1.0 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000037216 Lipt1 ENSMUST00000144440 ENSMUSP00000115465 TRANSLATION protein_coding stop - 3 230.0 24.0 3.0 0.0 21.4 0.0 -4,-2 0.0216 6 -2.0 MINOR ENSMUSG00000037216 Lipt1 ENSMUST00000142670 ENSMUSP00000122160 TRANSLATION protein_coding stop - 2 198.0 21.0 2.0 0.0 21.4 0.0 -4,-2 0.0201 5 -2.0 MINOR ENSMUSG00000037216 Lipt1 ENSMUST00000041621 ENSMUSP00000038739 TRANSLATION protein_coding - CCDS14895.1 1 373.0 24.0 4.0 16.5 21.4 0.0 -4,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000038733 Wdr26 ENSMUST00000162819 ENSMUSP00000124592 TRANSLATION protein_coding - CCDS15583.2 1 641.0 0.0 11.615 0.4 104.5 0.0 -4,-5 1.0 16 8.0 PRINCIPAL:2 ENSMUSG00000038733 Wdr26 ENSMUST00000159290 ENSMUSP00000123863 TRANSLATION protein_coding start - 5 120.0 0.0 2.264 0.0 47.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038733 Wdr26 ENSMUST00000237749 ENSMUSP00000158345 TRANSLATION protein_coding - - - 729.0 0.0 11.615 0.0 104.5 0.0 -4,-7 0.0746 17 8.0 ALTERNATIVE:2 ENSMUSG00000038733 Wdr26 ENSMUST00000161531 - NO_TRANSLATION retained_intron ENSMUSG00000038733 Wdr26 ENSMUST00000159698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038733 Wdr26 ENSMUST00000159673 ENSMUSP00000125023 TRANSLATION nonsense_mediated_decay start - 5 147.0 0.0 3.344 0.0 47.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038733 Wdr26 ENSMUST00000159625 - NO_TRANSLATION retained_intron ENSMUSG00000038733 Wdr26 ENSMUST00000036329 ENSMUSP00000045177 TRANSLATION nonsense_mediated_decay start - 5 183.0 0.0 1.7 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038733 Wdr26 ENSMUST00000162963 ENSMUSP00000124186 TRANSLATION protein_coding start - 5 625.0 0.0 11.615 0.1 104.5 0.0 -4,-5 0.2792 15 -2.0 MINOR ENSMUSG00000026062 Slc9a2 ENSMUST00000027231 ENSMUSP00000027231 TRANSLATION protein_coding - CCDS14914.1 1 814.0 0.0 6.85 4.5 453.3 7.0 2,-2 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000026062 Slc9a2 ENSMUST00000192294 - NO_TRANSLATION retained_intron ENSMUSG00000026062 Slc9a2 ENSMUST00000192345 ENSMUSP00000142144 TRANSLATION protein_coding - - 1 336.0 0.0 2.0 0.0 203.3 4.0 2,-2 0.0054 1 0.0 MINOR ENSMUSG00000038235 F11r ENSMUST00000155913 - NO_TRANSLATION retained_intron ENSMUSG00000038235 F11r ENSMUST00000043839 ENSMUSP00000041907 TRANSLATION protein_coding - CCDS15496.1 1 300.0 0.0 6.125 11.0 96.7 0.0 1,-2 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000038235 F11r ENSMUST00000144497 - NO_TRANSLATION retained_intron ENSMUSG00000026254 Eif4e2 ENSMUST00000076362 ENSMUSP00000075699 TRANSLATION protein_coding - CCDS15130.1 1 234.0 0.0 4.73 20.6 203.2 0.0 -4,-5 0.9801 5 11.298 ALTERNATIVE:1 ENSMUSG00000026254 Eif4e2 ENSMUST00000050876 ENSMUSP00000053403 TRANSLATION protein_coding - - 5 259.0 0.0 4.33 0.0 203.2 0.0 -4,-5 0.0041 5 6.8 MINOR ENSMUSG00000026254 Eif4e2 ENSMUST00000113235 ENSMUSP00000108861 TRANSLATION protein_coding - CCDS83571.1 5 236.0 0.0 4.83 22.2 203.2 0.0 -4,-5 1.0 6 11.802 PRINCIPAL:3 ENSMUSG00000026254 Eif4e2 ENSMUST00000113231 ENSMUSP00000108857 TRANSLATION protein_coding - CCDS15131.1 1 240.0 0.0 4.93 2.0 203.2 0.0 -4,-5 0.4317 5 8.188 MINOR ENSMUSG00000026254 Eif4e2 ENSMUST00000113233 ENSMUSP00000108859 TRANSLATION protein_coding - CCDS35652.1 1 245.0 0.0 4.93 11.7 203.2 0.0 -4,-5 0.8763 5 10.02 MINOR ENSMUSG00000026254 Eif4e2 ENSMUST00000113230 ENSMUSP00000108856 TRANSLATION protein_coding - - 1 228.0 0.0 4.396 0.0 203.2 0.0 -4,-5 0.0203 5 6.932 MINOR ENSMUSG00000026254 Eif4e2 ENSMUST00000123735 ENSMUSP00000137771 TRANSLATION protein_coding stop - 5 128.0 0.0 2.33 0.0 98.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026254 Eif4e2 ENSMUST00000113232 ENSMUSP00000108858 TRANSLATION protein_coding - - 1 233.0 0.0 4.396 3.0 203.2 0.0 -4,-5 0.2116 5 7.308 MINOR ENSMUSG00000004872 Pax3 ENSMUST00000004994 ENSMUSP00000004994 TRANSLATION protein_coding - CCDS48294.1 1 484.0 0.0 3.8 26.8 418.5 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000004872 Pax3 ENSMUST00000087086 ENSMUSP00000084320 TRANSLATION protein_coding - CCDS15082.1 1 479.0 0.0 3.8 2.1 418.5 0.0 -4,-2 0.5408 - 12.172 MINOR ENSMUSG00000004872 Pax3 ENSMUST00000172555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041426 Hibch ENSMUST00000186922 - NO_TRANSLATION retained_intron ENSMUSG00000041426 Hibch ENSMUST00000159352 ENSMUSP00000124976 TRANSLATION protein_coding - - 5 311.0 14.0 7.205 0.1 344.2 0.0 -4,0 0.002 11 5.328 MINOR ENSMUSG00000041426 Hibch ENSMUST00000044478 ENSMUSP00000045606 TRANSLATION protein_coding - CCDS14948.1 1 385.0 16.0 9.875 12.2 460.8 0.0 -4,0 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000041426 Hibch ENSMUST00000162609 - NO_TRANSLATION retained_intron ENSMUSG00000041426 Hibch ENSMUST00000161125 - NO_TRANSLATION retained_intron ENSMUSG00000041426 Hibch ENSMUST00000159431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041426 Hibch ENSMUST00000161552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026174 Cnot9 ENSMUST00000137100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026174 Cnot9 ENSMUST00000087215 ENSMUSP00000084466 TRANSLATION protein_coding - CCDS35615.1 1 299.0 0.0 7.0 34.9 453.3 0.0 -1,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000026174 Cnot9 ENSMUST00000147810 - NO_TRANSLATION retained_intron ENSMUSG00000026578 Ccdc181 ENSMUST00000027867 ENSMUSP00000027867 TRANSLATION protein_coding - CCDS15434.1 1 509.0 0.0 0.0 12.5 0.0 0.0 -4,-5 1.0 5 3.0 PRINCIPAL:1 ENSMUSG00000025991 Cps1 ENSMUST00000027144 ENSMUSP00000027144 TRANSLATION protein_coding - CCDS35605.1 1 1500.0 48.0 33.5 18.7 866.4 0.0 -4,-1 1.0 68 22.0 PRINCIPAL:1 ENSMUSG00000052062 Pard3b ENSMUST00000075374 ENSMUSP00000074837 TRANSLATION protein_coding - CCDS48276.1 5 1203.0 0.0 6.2 8.5 246.3 0.0 -4,-7 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000052062 Pard3b ENSMUST00000046673 ENSMUSP00000040439 TRANSLATION protein_coding - - 5 1141.0 0.0 5.2 2.2 202.3 0.0 -4,-7 0.1132 14 7.842 MINOR ENSMUSG00000052062 Pard3b ENSMUST00000188325 - NO_TRANSLATION retained_intron ENSMUSG00000052062 Pard3b ENSMUST00000094906 ENSMUSP00000092510 TRANSLATION protein_coding - - 5 1104.0 0.0 6.2 2.2 246.3 0.0 -4,-7 0.3036 13 12.48 MINOR ENSMUSG00000052062 Pard3b ENSMUST00000138768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052062 Pard3b ENSMUST00000129030 - NO_TRANSLATION retained_intron ENSMUSG00000034353 Ramp1 ENSMUST00000188475 ENSMUSP00000139720 TRANSLATION protein_coding - CCDS48321.1 3 105.0 0.0 1.0 0.0 26.3 0.0 3,-2 0.0305 - 3.0 MINOR ENSMUSG00000034353 Ramp1 ENSMUST00000165855 ENSMUSP00000128679 TRANSLATION protein_coding - CCDS78648.1 2 103.0 0.0 1.0 0.0 26.6 0.0 3,-2 0.0305 - 3.0 MINOR ENSMUSG00000034353 Ramp1 ENSMUST00000097648 ENSMUSP00000095253 TRANSLATION protein_coding - CCDS15158.1 1 148.0 0.0 2.0 11.7 156.9 0.0 3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000026471 Mr1 ENSMUST00000192410 ENSMUSP00000141476 TRANSLATION nonsense_mediated_decay - - 1 89.0 0.0 1.91 0.0 57.0 0.0 2,-3 0.0009 - -2.0 MINOR ENSMUSG00000026471 Mr1 ENSMUST00000191773 - NO_TRANSLATION retained_intron ENSMUSG00000026471 Mr1 ENSMUST00000027744 ENSMUSP00000027744 TRANSLATION protein_coding - CCDS15383.1 1 341.0 0.0 4.99 1.9 250.2 0.0 2,2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026471 Mr1 ENSMUST00000194612 ENSMUSP00000142195 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 0.91 0.0 0.0 0.0 2,2 0.0018 - -2.0 MINOR ENSMUSG00000026471 Mr1 ENSMUST00000195579 - NO_TRANSLATION retained_intron ENSMUSG00000023150 Ivns1abp ENSMUST00000023918 ENSMUSP00000023918 TRANSLATION protein_coding - CCDS15359.1 1 642.0 0.0 10.38 0.0 441.3 0.0 -4,-5 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000023150 Ivns1abp ENSMUST00000186745 ENSMUSP00000140708 TRANSLATION nonsense_mediated_decay - CCDS35735.1 1 221.0 0.0 3.75 1.8 146.7 0.0 -4,-5 0.2887 - -2.0 MINOR ENSMUSG00000023150 Ivns1abp ENSMUST00000097543 ENSMUSP00000095150 TRANSLATION protein_coding - CCDS15358.1 1 600.0 0.0 9.78 0.0 421.6 0.0 -4,-5 0.1313 16 9.618 MINOR ENSMUSG00000023150 Ivns1abp ENSMUST00000111887 ENSMUSP00000107518 TRANSLATION protein_coding - CCDS35735.1 1 221.0 0.0 3.75 1.8 146.7 0.0 -4,-5 0.2887 5 1.0 MINOR ENSMUSG00000023150 Ivns1abp ENSMUST00000190872 ENSMUSP00000140332 TRANSLATION protein_coding start - 3 77.0 0.0 1.528 0.0 57.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000036480 Prss56 ENSMUST00000044533 ENSMUSP00000138773 TRANSLATION protein_coding - CCDS59538.1 1 604.0 5.0 3.16 0.1 217.3 0.0 2,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000087236 Kif28 ENSMUST00000131716 ENSMUSP00000118935 TRANSLATION protein_coding - - 5 1030.0 11.0 8.252 0.4 381.3 0.0 -4,-7 0.5225 - 14.0 ALTERNATIVE:2 ENSMUSG00000087236 Kif28 ENSMUST00000223392 ENSMUSP00000152522 TRANSLATION protein_coding start/stop - 5 185.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000087236 Kif28 ENSMUST00000211943 ENSMUSP00000148289 TRANSLATION protein_coding - - 5 880.0 11.0 7.652 0.0 381.3 0.0 -4,-7 0.0884 - 12.8 MINOR ENSMUSG00000087236 Kif28 ENSMUST00000221136 ENSMUSP00000152770 TRANSLATION protein_coding - - 5 1034.0 11.0 8.252 0.1 381.3 0.0 -4,-7 0.9209 - 14.0 PRINCIPAL:2 ENSMUSG00000026295 Spp2 ENSMUST00000176708 ENSMUSP00000135862 TRANSLATION protein_coding - - 2 89.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - 0.84 MINOR ENSMUSG00000026295 Spp2 ENSMUST00000027518 ENSMUSP00000027518 TRANSLATION protein_coding - CCDS15145.1 1 203.0 0.0 3.33 4.5 125.8 0.0 2,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000026295 Spp2 ENSMUST00000189225 ENSMUSP00000141021 TRANSLATION nonsense_mediated_decay start - 5 78.0 0.0 1.5 0.0 70.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026037 Orc2 ENSMUST00000151723 - NO_TRANSLATION retained_intron ENSMUSG00000026037 Orc2 ENSMUST00000114325 ENSMUSP00000109964 TRANSLATION protein_coding - CCDS14974.1 1 528.0 0.0 7.5 1.5 356.9 0.0 -4,-5 0.3846 1 12.174 MINOR ENSMUSG00000026037 Orc2 ENSMUST00000191206 ENSMUSP00000141138 TRANSLATION protein_coding stop - 1 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026037 Orc2 ENSMUST00000027198 ENSMUSP00000027198 TRANSLATION protein_coding - CCDS14975.1 1 576.0 0.0 7.5 9.6 356.9 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000026037 Orc2 ENSMUST00000190695 ENSMUSP00000139869 TRANSLATION protein_coding stop - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026536 Ifi211 ENSMUST00000009340 ENSMUSP00000009340 TRANSLATION protein_coding - CCDS15532.1 1 425.0 0.0 3.3 0.0 280.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000009418 Nav1 ENSMUST00000190298 ENSMUSP00000140322 TRANSLATION protein_coding - - 1 2098.0 9.0 0.0 0.4 0.0 0.0 -4,-1 0.2688 33 6.0 ALTERNATIVE:2 ENSMUSG00000009418 Nav1 ENSMUST00000190735 - NO_TRANSLATION retained_intron ENSMUSG00000009418 Nav1 ENSMUST00000187311 - NO_TRANSLATION retained_intron ENSMUSG00000009418 Nav1 ENSMUST00000189362 - NO_TRANSLATION retained_intron ENSMUSG00000009418 Nav1 ENSMUST00000112103 - NO_TRANSLATION retained_intron ENSMUSG00000009418 Nav1 ENSMUST00000189252 ENSMUSP00000141115 TRANSLATION protein_coding start/stop - 5 223.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0551 4 -2.0 MINOR ENSMUSG00000009418 Nav1 ENSMUST00000067414 ENSMUSP00000067241 TRANSLATION protein_coding - CCDS35720.1 5 1875.0 9.0 0.0 1.0 0.0 0.0 -4,-5 1.0 32 6.0 PRINCIPAL:2 ENSMUSG00000009418 Nav1 ENSMUST00000190130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026269 Rnpepl1 ENSMUST00000178116 ENSMUSP00000136080 TRANSLATION nonsense_mediated_decay start - 3 172.0 0.0 2.24 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026269 Rnpepl1 ENSMUST00000180306 - NO_TRANSLATION retained_intron ENSMUSG00000026269 Rnpepl1 ENSMUST00000179837 ENSMUSP00000136670 TRANSLATION protein_coding start/stop - 5 133.0 0.0 2.97 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026269 Rnpepl1 ENSMUST00000179531 ENSMUSP00000136959 TRANSLATION nonsense_mediated_decay start - 2 80.0 0.0 0.6 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000026269 Rnpepl1 ENSMUST00000179993 ENSMUSP00000137624 TRANSLATION protein_coding start/stop - 3 173.0 0.0 2.6 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000026269 Rnpepl1 ENSMUST00000178778 - NO_TRANSLATION retained_intron ENSMUSG00000026269 Rnpepl1 ENSMUST00000027487 ENSMUSP00000027487 TRANSLATION protein_coding - CCDS15180.2 1 720.0 4.0 13.62 3.3 237.9 0.0 -4,-7 1.0 6 17.0 PRINCIPAL:1 ENSMUSG00000026269 Rnpepl1 ENSMUST00000178662 - NO_TRANSLATION retained_intron ENSMUSG00000026269 Rnpepl1 ENSMUST00000179854 - NO_TRANSLATION retained_intron ENSMUSG00000026269 Rnpepl1 ENSMUST00000178816 - NO_TRANSLATION retained_intron ENSMUSG00000026269 Rnpepl1 ENSMUST00000179127 ENSMUSP00000136390 TRANSLATION protein_coding start - 5 375.0 4.0 7.57 0.0 203.0 0.0 -4,-6 0.0017 4 -2.0 MINOR ENSMUSG00000026269 Rnpepl1 ENSMUST00000178361 - NO_TRANSLATION retained_intron ENSMUSG00000025945 Crygf ENSMUST00000027082 ENSMUSP00000027082 TRANSLATION protein_coding - CCDS15018.1 1 174.0 3.0 3.0 23.7 210.8 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000025945 Crygf ENSMUST00000114027 ENSMUSP00000109661 TRANSLATION protein_coding - - 2 114.0 3.0 1.2 0.0 97.0 0.0 -4,-5 0.0005 - 5.4 MINOR ENSMUSG00000026674 Ddr2 ENSMUST00000027985 ENSMUSP00000027985 TRANSLATION protein_coding - CCDS48436.1 1 854.0 23.0 11.23 7.9 361.8 0.0 4,-1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000026674 Ddr2 ENSMUST00000194619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026674 Ddr2 ENSMUST00000170800 ENSMUSP00000129624 TRANSLATION protein_coding - CCDS48436.1 5 854.0 23.0 11.23 7.9 361.8 0.0 4,-1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000026674 Ddr2 ENSMUST00000194690 ENSMUSP00000141443 TRANSLATION protein_coding - CCDS48436.1 1 854.0 23.0 11.23 7.9 361.8 0.0 4,-1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000026674 Ddr2 ENSMUST00000192312 ENSMUSP00000142191 TRANSLATION protein_coding stop - 3 129.0 0.0 2.0 0.0 45.1 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000026674 Ddr2 ENSMUST00000195867 - NO_TRANSLATION retained_intron ENSMUSG00000042229 Rabif ENSMUST00000047978 ENSMUSP00000038335 TRANSLATION protein_coding - CCDS15310.1 1 123.0 4.0 2.0 10.9 115.5 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000062729 Ppox ENSMUST00000151442 - NO_TRANSLATION retained_intron ENSMUSG00000062729 Ppox ENSMUST00000192956 ENSMUSP00000141835 TRANSLATION protein_coding stop - 5 389.0 27.0 8.995 0.0 138.7 0.0 -3,-6 0.0018 9 -2.0 MINOR ENSMUSG00000062729 Ppox ENSMUST00000145019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062729 Ppox ENSMUST00000152689 - NO_TRANSLATION retained_intron ENSMUSG00000062729 Ppox ENSMUST00000155083 - NO_TRANSLATION retained_intron ENSMUSG00000062729 Ppox ENSMUST00000126765 - NO_TRANSLATION retained_intron ENSMUSG00000062729 Ppox ENSMUST00000073120 ENSMUSP00000072863 TRANSLATION protein_coding - CCDS15487.1 1 477.0 35.0 11.0 11.0 214.7 0.0 -3,-1 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000062729 Ppox ENSMUST00000133050 - NO_TRANSLATION retained_intron ENSMUSG00000005763 Cd247 ENSMUST00000161559 ENSMUSP00000124299 TRANSLATION protein_coding - CCDS48428.2 1 188.0 0.0 1.85 0.0 111.1 1.0 1,-2 0.1262 4 10.356 MINOR ENSMUSG00000005763 Cd247 ENSMUST00000187313 ENSMUSP00000140926 TRANSLATION protein_coding - CCDS15443.1 1 206.0 0.0 1.85 0.0 111.1 1.0 1,-2 0.1404 4 10.356 MINOR ENSMUSG00000005763 Cd247 ENSMUST00000005907 ENSMUSP00000005907 TRANSLATION protein_coding - CCDS48427.1 1 164.0 0.0 1.85 18.2 138.5 1.0 1,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000005763 Cd247 ENSMUST00000162411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005763 Cd247 ENSMUST00000161971 ENSMUSP00000124297 TRANSLATION protein_coding - CCDS48429.1 1 177.0 0.0 1.85 0.0 111.1 1.0 1,-2 0.126 4 10.356 MINOR ENSMUSG00000005763 Cd247 ENSMUST00000027849 ENSMUSP00000027849 TRANSLATION protein_coding - CCDS15443.1 1 206.0 0.0 1.85 0.0 111.1 1.0 1,-2 0.1404 4 10.356 MINOR ENSMUSG00000005763 Cd247 ENSMUST00000178336 ENSMUSP00000136456 TRANSLATION protein_coding - - 5 189.0 0.0 1.85 0.0 111.1 1.0 1,-2 0.0343 4 10.356 MINOR ENSMUSG00000005763 Cd247 ENSMUST00000159070 - NO_TRANSLATION retained_intron ENSMUSG00000005763 Cd247 ENSMUST00000086002 ENSMUSP00000083165 TRANSLATION nonsense_mediated_decay - CCDS15443.1 1 206.0 0.0 1.85 0.0 111.1 1.0 1,-2 0.1404 - -2.0 MINOR ENSMUSG00000078193 Gm2000 ENSMUST00000102782 ENSMUSP00000099843 TRANSLATION protein_coding - - - 123.0 0.0 1.0 33.9 73.3 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000087247 Alkal1 ENSMUST00000133144 ENSMUSP00000137420 TRANSLATION protein_coding - CCDS56620.1 1 127.0 0.0 0.75 1.8 139.0 0.0 3,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000090486 BC035947 ENSMUST00000190853 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090486 BC035947 ENSMUST00000170511 ENSMUSP00000132488 TRANSLATION protein_coding - - 1 695.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.6206 - 0.0 PRINCIPAL:1 ENSMUSG00000037995 Igsf9 ENSMUST00000155426 - NO_TRANSLATION retained_intron ENSMUSG00000037995 Igsf9 ENSMUST00000127052 ENSMUSP00000123401 TRANSLATION protein_coding stop - 3 109.0 0.0 1.45 0.0 0.0 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000037995 Igsf9 ENSMUST00000125258 - NO_TRANSLATION retained_intron ENSMUSG00000037995 Igsf9 ENSMUST00000140816 - NO_TRANSLATION retained_intron ENSMUSG00000037995 Igsf9 ENSMUST00000141888 - NO_TRANSLATION retained_intron ENSMUSG00000037995 Igsf9 ENSMUST00000140814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037995 Igsf9 ENSMUST00000193620 ENSMUSP00000142072 TRANSLATION protein_coding start/stop - 3 212.0 0.0 2.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000037995 Igsf9 ENSMUST00000132141 - NO_TRANSLATION retained_intron ENSMUSG00000037995 Igsf9 ENSMUST00000135267 ENSMUSP00000116948 TRANSLATION protein_coding stop - 5 168.0 0.0 3.12 0.0 52.0 0.0 1,-3 0.0 - -2.0 MINOR ENSMUSG00000037995 Igsf9 ENSMUST00000127482 ENSMUSP00000117854 TRANSLATION nonsense_mediated_decay - - 2 528.0 0.0 7.8 0.0 146.5 0.0 2,-2 0.002 - -2.0 MINOR ENSMUSG00000037995 Igsf9 ENSMUST00000052629 ENSMUSP00000058275 TRANSLATION protein_coding - CCDS15515.1 1 1179.0 0.0 10.885 9.6 203.3 1.0 2,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000037995 Igsf9 ENSMUST00000150855 - NO_TRANSLATION retained_intron ENSMUSG00000037995 Igsf9 ENSMUST00000128638 - NO_TRANSLATION retained_intron ENSMUSG00000037995 Igsf9 ENSMUST00000111235 ENSMUSP00000106866 TRANSLATION protein_coding - CCDS15515.1 1 1179.0 0.0 10.885 9.6 203.3 1.0 2,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000052759 Gpr25 ENSMUST00000086395 ENSMUSP00000083583 TRANSLATION protein_coding - CCDS48381.1 - 358.0 0.0 1.0 2.1 135.9 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026615 Eprs ENSMUST00000192049 - NO_TRANSLATION retained_intron ENSMUSG00000026615 Eprs ENSMUST00000192284 - NO_TRANSLATION retained_intron ENSMUSG00000026615 Eprs ENSMUST00000191900 ENSMUSP00000141467 TRANSLATION nonsense_mediated_decay - - 3 131.0 0.0 3.33 0.0 21.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000026615 Eprs ENSMUST00000192324 - NO_TRANSLATION retained_intron ENSMUSG00000026615 Eprs ENSMUST00000192588 - NO_TRANSLATION retained_intron ENSMUSG00000026615 Eprs ENSMUST00000193788 - NO_TRANSLATION retained_intron ENSMUSG00000026615 Eprs ENSMUST00000046514 ENSMUSP00000045841 TRANSLATION protein_coding - CCDS35818.1 1 1512.0 26.0 23.48 8.1 1008.7 0.0 -4,-6 1.0 68 21.0 PRINCIPAL:1 ENSMUSG00000026615 Eprs ENSMUST00000194157 - NO_TRANSLATION retained_intron ENSMUSG00000026615 Eprs ENSMUST00000195824 ENSMUSP00000141550 TRANSLATION nonsense_mediated_decay start - 5 96.0 0.0 2.33 0.0 21.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000003464 Pex19 ENSMUST00000111252 ENSMUSP00000106883 TRANSLATION protein_coding - CCDS48445.1 1 207.0 0.0 3.25 1.5 172.7 0.0 -4,-5 0.1957 3 11.424 MINOR ENSMUSG00000003464 Pex19 ENSMUST00000075895 ENSMUSP00000075289 TRANSLATION protein_coding - CCDS15508.1 1 299.0 0.0 3.25 8.1 185.8 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000003464 Pex19 ENSMUST00000147799 - NO_TRANSLATION retained_intron ENSMUSG00000003464 Pex19 ENSMUST00000133546 - NO_TRANSLATION retained_intron ENSMUSG00000003464 Pex19 ENSMUST00000127662 - NO_TRANSLATION retained_intron ENSMUSG00000003464 Pex19 ENSMUST00000133081 - NO_TRANSLATION retained_intron ENSMUSG00000026220 Slc16a14 ENSMUST00000027422 ENSMUSP00000027422 TRANSLATION protein_coding - CCDS15106.1 1 512.0 0.0 1.7 8.5 138.7 13.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026220 Slc16a14 ENSMUST00000186980 ENSMUSP00000140314 TRANSLATION protein_coding stop - 3 72.0 0.0 0.4 0.0 0.0 2.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000019230 Lhx9 ENSMUST00000112026 ENSMUSP00000107657 TRANSLATION protein_coding - CCDS35726.1 1 397.0 15.0 3.52 34.8 185.2 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000019230 Lhx9 ENSMUST00000093486 ENSMUSP00000091198 TRANSLATION protein_coding - CCDS15333.1 1 321.0 15.0 3.02 7.0 157.8 0.0 -4,-6 0.1724 - 16.066 MINOR ENSMUSG00000019230 Lhx9 ENSMUST00000046870 ENSMUSP00000036480 TRANSLATION protein_coding - - 5 388.0 15.0 3.52 10.3 185.2 0.0 -4,-6 0.4524 - 19.1 MINOR ENSMUSG00000019230 Lhx9 ENSMUST00000112030 ENSMUSP00000107661 TRANSLATION protein_coding - CCDS15333.1 5 321.0 15.0 3.02 7.0 157.8 0.0 -4,-6 0.1724 - 16.066 MINOR ENSMUSG00000019230 Lhx9 ENSMUST00000194557 ENSMUSP00000142268 TRANSLATION nonsense_mediated_decay - - 5 75.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019230 Lhx9 ENSMUST00000019374 ENSMUSP00000019374 TRANSLATION protein_coding - CCDS15334.1 1 330.0 15.0 3.02 32.6 157.8 0.0 -4,-6 0.6787 - 19.094 MINOR ENSMUSG00000019230 Lhx9 ENSMUST00000192425 - NO_TRANSLATION retained_intron ENSMUSG00000047053 Teddm1a ENSMUST00000050660 ENSMUSP00000062098 TRANSLATION protein_coding - CCDS15380.1 - 305.0 0.0 0.8 6.5 85.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043629 1700019D03Rik ENSMUST00000190831 ENSMUSP00000140160 TRANSLATION protein_coding - CCDS14949.1 2 106.0 0.0 0.8 1.8 127.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000043629 1700019D03Rik ENSMUST00000186266 ENSMUSP00000140273 TRANSLATION protein_coding - CCDS14949.1 3 106.0 0.0 0.8 1.8 127.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000043629 1700019D03Rik ENSMUST00000050567 ENSMUSP00000055413 TRANSLATION protein_coding - CCDS14949.1 1 106.0 0.0 0.8 1.8 127.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000043629 1700019D03Rik ENSMUST00000191441 ENSMUSP00000139750 TRANSLATION protein_coding - CCDS14949.1 3 106.0 0.0 0.8 1.8 127.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000043629 1700019D03Rik ENSMUST00000114492 ENSMUSP00000110136 TRANSLATION protein_coding - CCDS14949.1 3 106.0 0.0 0.8 1.8 127.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000043629 1700019D03Rik ENSMUST00000190726 ENSMUSP00000140530 TRANSLATION protein_coding - CCDS14949.1 5 106.0 0.0 0.8 1.8 127.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000043629 1700019D03Rik ENSMUST00000114493 ENSMUSP00000110137 TRANSLATION protein_coding - CCDS14949.1 1 106.0 0.0 0.8 1.8 127.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000025930 Msc ENSMUST00000188982 - NO_TRANSLATION retained_intron ENSMUSG00000025930 Msc ENSMUST00000190471 - NO_TRANSLATION retained_intron ENSMUSG00000025930 Msc ENSMUST00000027062 ENSMUSP00000027062 TRANSLATION protein_coding - CCDS14825.1 1 201.0 0.0 1.4 4.6 58.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025930 Msc ENSMUST00000190719 ENSMUSP00000140741 TRANSLATION protein_coding start - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000039783 Kmo ENSMUST00000150646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039783 Kmo ENSMUST00000142223 - NO_TRANSLATION retained_intron ENSMUSG00000039783 Kmo ENSMUST00000097458 ENSMUSP00000095067 TRANSLATION protein_coding - - 5 445.0 32.0 11.43 0.0 25.2 2.0 -4,-7 0.0367 15 16.002 MINOR ENSMUSG00000039783 Kmo ENSMUST00000140474 ENSMUSP00000122943 TRANSLATION nonsense_mediated_decay - - 1 255.0 24.0 5.0 0.0 0.0 0.0 -4,-7 0.0048 8 -2.0 MINOR ENSMUSG00000039783 Kmo ENSMUST00000040250 ENSMUSP00000038914 TRANSLATION protein_coding - CCDS15548.1 1 479.0 32.0 12.43 3.9 25.2 2.0 -4,-7 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000039783 Kmo ENSMUST00000137174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025986 Slc39a10 ENSMUST00000141226 - NO_TRANSLATION retained_intron ENSMUSG00000025986 Slc39a10 ENSMUST00000185520 ENSMUSP00000140570 TRANSLATION protein_coding stop - 3 144.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000025986 Slc39a10 ENSMUST00000186852 ENSMUSP00000140176 TRANSLATION protein_coding stop - 3 167.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0019 3 -2.0 MINOR ENSMUSG00000025986 Slc39a10 ENSMUST00000027131 ENSMUSP00000027131 TRANSLATION protein_coding - CCDS14936.1 1 833.0 0.0 2.15 9.9 226.2 0.0 0,-3 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000004364 Cul3 ENSMUST00000163119 ENSMUSP00000130738 TRANSLATION protein_coding - CCDS15094.1 1 768.0 0.0 14.375 29.6 850.2 0.0 -4,-7 1.0 36 16.0 PRINCIPAL:1 ENSMUSG00000004364 Cul3 ENSMUST00000170897 ENSMUSP00000130010 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000004364 Cul3 ENSMUST00000167794 - NO_TRANSLATION retained_intron ENSMUSG00000004364 Cul3 ENSMUST00000164108 ENSMUSP00000131891 TRANSLATION protein_coding - - 5 702.0 0.0 12.625 4.3 782.0 0.0 -4,-7 0.1441 31 4.87 MINOR ENSMUSG00000004364 Cul3 ENSMUST00000168372 ENSMUSP00000132485 TRANSLATION protein_coding start - 2 111.0 0.0 1.11 0.0 89.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000004364 Cul3 ENSMUST00000167293 ENSMUSP00000126630 TRANSLATION nonsense_mediated_decay start - 5 85.0 0.0 2.25 0.0 55.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026698 Pigc ENSMUST00000111594 ENSMUSP00000107221 TRANSLATION protein_coding - CCDS15419.1 1 297.0 0.0 2.0 15.8 293.1 6.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026698 Pigc ENSMUST00000160881 ENSMUSP00000125321 TRANSLATION protein_coding stop - 2 140.0 0.0 1.0 0.0 129.5 3.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026698 Pigc ENSMUST00000028021 ENSMUSP00000028021 TRANSLATION protein_coding - CCDS15419.1 1 297.0 0.0 2.0 15.8 293.1 6.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026698 Pigc ENSMUST00000193784 ENSMUSP00000141646 TRANSLATION protein_coding - CCDS15419.1 - 297.0 0.0 2.0 15.8 293.1 6.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026698 Pigc ENSMUST00000159648 ENSMUSP00000125562 TRANSLATION protein_coding stop - 2 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026042 Col5a2 ENSMUST00000131535 - NO_TRANSLATION retained_intron ENSMUSG00000026042 Col5a2 ENSMUST00000150143 - NO_TRANSLATION retained_intron ENSMUSG00000026042 Col5a2 ENSMUST00000086430 ENSMUSP00000083620 TRANSLATION protein_coding - CCDS35555.1 1 1497.0 0.0 30.8 12.7 557.4 0.0 3,-2 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000026042 Col5a2 ENSMUST00000134681 - NO_TRANSLATION retained_intron ENSMUSG00000037624 Kcnk2 ENSMUST00000079451 ENSMUSP00000078416 TRANSLATION protein_coding - CCDS78773.1 1 414.0 0.0 6.55 21.9 139.2 7.0 -4,-7 0.9882 2 12.0 ALTERNATIVE:1 ENSMUSG00000037624 Kcnk2 ENSMUST00000195016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037624 Kcnk2 ENSMUST00000194172 ENSMUSP00000142176 TRANSLATION protein_coding - - 5 237.0 0.0 3.5 0.0 67.6 5.0 -4,-1 0.0021 1 0.0 MINOR ENSMUSG00000037624 Kcnk2 ENSMUST00000193319 ENSMUSP00000141891 TRANSLATION protein_coding - CCDS48480.1 1 426.0 0.0 6.55 9.9 139.2 7.0 -4,-7 0.8289 3 9.704 MINOR ENSMUSG00000037624 Kcnk2 ENSMUST00000192723 ENSMUSP00000141849 TRANSLATION protein_coding - CCDS48481.1 1 411.0 0.0 6.55 21.9 139.2 7.0 -4,-7 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000037624 Kcnk2 ENSMUST00000193686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037624 Kcnk2 ENSMUST00000180044 ENSMUSP00000136513 TRANSLATION nonsense_mediated_decay - - 1 152.0 0.0 1.4 0.0 0.0 4.0 -4,-1 0.0038 1 -2.0 MINOR ENSMUSG00000037624 Kcnk2 ENSMUST00000192529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037624 Kcnk2 ENSMUST00000194402 ENSMUSP00000142026 TRANSLATION protein_coding - - 5 422.0 0.0 6.55 15.6 139.2 7.0 -4,-1 0.7771 2 10.796 MINOR ENSMUSG00000039354 Smarcal1 ENSMUST00000136498 - NO_TRANSLATION retained_intron ENSMUSG00000039354 Smarcal1 ENSMUST00000152225 ENSMUSP00000137833 TRANSLATION protein_coding - CCDS35609.1 1 910.0 10.0 9.3 0.1 303.0 0.0 -4,-5 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000039354 Smarcal1 ENSMUST00000150725 - NO_TRANSLATION retained_intron ENSMUSG00000039354 Smarcal1 ENSMUST00000156797 - NO_TRANSLATION retained_intron ENSMUSG00000039354 Smarcal1 ENSMUST00000145868 ENSMUSP00000120230 TRANSLATION protein_coding stop - 3 98.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039354 Smarcal1 ENSMUST00000152814 - NO_TRANSLATION retained_intron ENSMUSG00000039354 Smarcal1 ENSMUST00000133123 ENSMUSP00000114848 TRANSLATION protein_coding stop - 3 194.0 0.0 1.8 0.0 117.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039354 Smarcal1 ENSMUST00000126832 - NO_TRANSLATION retained_intron ENSMUSG00000039354 Smarcal1 ENSMUST00000047615 ENSMUSP00000047589 TRANSLATION protein_coding - CCDS35609.1 1 910.0 10.0 9.3 0.1 303.0 0.0 -4,-5 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000026401 Cd55b ENSMUST00000112488 ENSMUSP00000108107 TRANSLATION protein_coding - CCDS35699.1 1 400.0 0.0 5.3835 0.1 169.2 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026401 Cd55b ENSMUST00000136497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026401 Cd55b ENSMUST00000119432 ENSMUSP00000113352 TRANSLATION protein_coding - CCDS83587.1 1 287.0 0.0 4.1835 0.0 125.1 0.0 3,-2 0.0474 - 6.954 MINOR ENSMUSG00000026251 Chrnd ENSMUST00000073252 ENSMUSP00000072983 TRANSLATION protein_coding - CCDS15129.1 1 520.0 0.0 8.07 10.0 475.9 4.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026251 Chrnd ENSMUST00000186373 ENSMUSP00000139537 TRANSLATION protein_coding - - 1 411.0 0.0 6.02 0.0 380.9 4.0 -4,-5 0.0066 - 2.202 MINOR ENSMUSG00000026251 Chrnd ENSMUST00000189970 - NO_TRANSLATION retained_intron ENSMUSG00000026003 Acadl ENSMUST00000139208 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026003 Acadl ENSMUST00000027153 ENSMUSP00000027153 TRANSLATION protein_coding - CCDS15023.1 1 430.0 30.0 9.5 9.0 335.5 0.0 -2,1 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000038530 Rgs4 ENSMUST00000027991 ENSMUSP00000027991 TRANSLATION protein_coding - CCDS15465.1 1 205.0 0.0 3.5 18.7 125.6 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038530 Rgs4 ENSMUST00000132567 - NO_TRANSLATION retained_intron ENSMUSG00000038530 Rgs4 ENSMUST00000111357 ENSMUSP00000106989 TRANSLATION protein_coding - - 5 93.0 0.0 0.75 12.1 0.0 0.0 -4,-2 0.4128 - 3.006 MINOR ENSMUSG00000038949 Cnst ENSMUST00000040706 ENSMUSP00000048205 TRANSLATION protein_coding - CCDS15562.1 1 711.0 0.0 0.0 0.0 174.4 0.0 -4,-5 1.0 11 6.0 PRINCIPAL:1 ENSMUSG00000038949 Cnst ENSMUST00000153962 - NO_TRANSLATION retained_intron ENSMUSG00000038949 Cnst ENSMUST00000144370 - NO_TRANSLATION retained_intron ENSMUSG00000038949 Cnst ENSMUST00000143270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000100679 Gm28778 ENSMUST00000190734 ENSMUSP00000141087 TRANSLATION protein_coding,RT - - 3 529.0 16.0 7.3 0.0 387.6 1.0 -4,-7 0.7898 - -2.0 PRINCIPAL:5 ENSMUSG00000100679 Gm28778 ENSMUST00000249259 ENSMUSP00000159639 TRANSLATION nonsense_mediated_decay - - - 136.0 0.0 2.0 0.0 130.3 1.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000025920 Stau2 ENSMUST00000162435 ENSMUSP00000123827 TRANSLATION protein_coding - CCDS48223.1 5 538.0 0.0 4.65 6.4 173.7 0.0 -4,-5 0.461 19 10.341 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000153966 ENSMUSP00000117537 TRANSLATION protein_coding stop - 5 97.0 0.0 1.0 0.0 38.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000131257 ENSMUSP00000121410 TRANSLATION protein_coding - - 5 473.0 0.0 4.7 1.0 174.4 0.0 -4,-5 0.0131 17 8.508 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000027052 ENSMUSP00000027052 TRANSLATION protein_coding - CCDS48223.1 1 538.0 0.0 4.65 6.4 173.7 0.0 -4,-5 0.461 19 10.341 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000054668 ENSMUSP00000053190 TRANSLATION protein_coding - CCDS14831.2 5 570.0 0.0 5.25 9.2 211.9 0.0 -4,-5 1.0 20 14.856 PRINCIPAL:1 ENSMUSG00000025920 Stau2 ENSMUST00000162751 ENSMUSP00000124505 TRANSLATION protein_coding - CCDS14831.2 1 570.0 0.0 5.25 9.2 211.9 0.0 -4,-5 1.0 20 14.856 PRINCIPAL:1 ENSMUSG00000025920 Stau2 ENSMUST00000159558 ENSMUSP00000125726 TRANSLATION protein_coding - CCDS83529.1 5 479.0 0.0 4.7 4.0 174.4 0.0 -4,-5 0.1817 17 9.606 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000128957 ENSMUSP00000122410 TRANSLATION protein_coding - CCDS83528.1 5 511.0 0.0 5.3 4.4 212.6 0.0 -4,-5 0.6273 18 13.245 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000144138 ENSMUSP00000119130 TRANSLATION protein_coding - - 5 125.0 0.0 1.0 0.0 38.2 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000162627 ENSMUSP00000123781 TRANSLATION protein_coding - CCDS48223.1 5 538.0 0.0 4.65 6.4 173.7 0.0 -4,-5 0.461 19 10.341 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000145092 ENSMUSP00000115041 TRANSLATION protein_coding - - 5 93.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000115360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025920 Stau2 ENSMUST00000151888 ENSMUSP00000125473 TRANSLATION protein_coding stop - 2 55.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000149320 ENSMUSP00000118489 TRANSLATION protein_coding - CCDS83528.1 5 511.0 0.0 5.3 4.4 212.6 0.0 -4,-5 0.6273 18 13.245 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000162007 ENSMUSP00000124303 TRANSLATION protein_coding - CCDS83529.1 1 479.0 0.0 4.7 4.0 174.4 0.0 -4,-5 0.1817 17 9.606 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000127420 ENSMUSP00000122116 TRANSLATION nonsense_mediated_decay - - 1 112.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025920 Stau2 ENSMUST00000115359 ENSMUSP00000111016 TRANSLATION protein_coding - - 1 125.0 0.0 1.0 0.0 38.2 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000025940 Tmem70 ENSMUST00000065373 ENSMUSP00000070497 TRANSLATION protein_coding - CCDS56623.1 1 253.0 0.0 0.6 5.5 183.3 2.0 -2,2 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000025940 Tmem70 ENSMUST00000176451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025940 Tmem70 ENSMUST00000177501 ENSMUSP00000135483 TRANSLATION protein_coding - CCDS35518.1 1 254.0 0.0 0.6 4.4 183.3 2.0 -2,2 0.9256 - 9.512 ALTERNATIVE:2 ENSMUSG00000025940 Tmem70 ENSMUST00000177532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026166 Ccl20 ENSMUST00000186832 ENSMUSP00000139923 TRANSLATION protein_coding - CCDS78638.1 1 96.0 0.0 2.38 8.0 77.2 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026166 Ccl20 ENSMUST00000027351 ENSMUSP00000027351 TRANSLATION protein_coding - - 1 102.0 0.0 2.35 0.1 77.2 0.0 3,-2 0.1182 - 11.922 MINOR ENSMUSG00000026166 Ccl20 ENSMUST00000113437 ENSMUSP00000109064 TRANSLATION protein_coding - CCDS35632.1 1 97.0 0.0 2.38 0.0 77.2 0.0 3,-2 0.3923 - 12.0 MINOR ENSMUSG00000079429 Mroh2a ENSMUST00000113130 ENSMUSP00000108755 TRANSLATION protein_coding - CCDS69921.1 5 1671.0 0.0 2.1 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000079429 Mroh2a ENSMUST00000142632 - NO_TRANSLATION retained_intron ENSMUSG00000079429 Mroh2a ENSMUST00000135948 ENSMUSP00000118971 TRANSLATION protein_coding start - 3 174.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0095 - -2.0 MINOR ENSMUSG00000079429 Mroh2a ENSMUST00000148474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026708 Cenpl ENSMUST00000028035 ENSMUSP00000028035 TRANSLATION protein_coding - - 1 329.0 0.0 0.0 0.0 112.9 0.0 -4,-7 0.0448 3 5.928 MINOR ENSMUSG00000026708 Cenpl ENSMUST00000192850 ENSMUSP00000141428 TRANSLATION nonsense_mediated_decay - - 1 155.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000026708 Cenpl ENSMUST00000195212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026708 Cenpl ENSMUST00000195571 ENSMUSP00000142254 TRANSLATION nonsense_mediated_decay - - 2 155.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026708 Cenpl ENSMUST00000143486 ENSMUSP00000138058 TRANSLATION nonsense_mediated_decay - - 1 62.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026708 Cenpl ENSMUST00000192150 ENSMUSP00000141326 TRANSLATION nonsense_mediated_decay - - 2 62.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000026708 Cenpl ENSMUST00000111618 ENSMUSP00000107245 TRANSLATION protein_coding - CCDS48413.1 5 345.0 0.0 0.0 9.7 114.1 0.0 -4,-7 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000026708 Cenpl ENSMUST00000155808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026708 Cenpl ENSMUST00000194855 ENSMUSP00000141872 TRANSLATION nonsense_mediated_decay - - 2 155.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026708 Cenpl ENSMUST00000111620 ENSMUSP00000107247 TRANSLATION protein_coding - CCDS48413.1 1 345.0 0.0 0.0 9.7 114.1 0.0 -4,-7 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000039395 Mreg ENSMUST00000048860 ENSMUSP00000041878 TRANSLATION protein_coding - CCDS15032.1 1 214.0 0.0 4.0 12.7 236.0 0.0 -3,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000025934 Gsta3 ENSMUST00000124990 ENSMUSP00000140210 TRANSLATION protein_coding stop - 5 133.0 5.0 3.0 0.0 98.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025934 Gsta3 ENSMUST00000027067 ENSMUSP00000027067 TRANSLATION protein_coding - CCDS14847.1 1 221.0 10.0 5.25 18.3 141.5 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000025934 Gsta3 ENSMUST00000190711 - NO_TRANSLATION retained_intron ENSMUSG00000025934 Gsta3 ENSMUST00000121676 ENSMUSP00000113262 TRANSLATION protein_coding - CCDS14847.1 5 221.0 10.0 5.25 18.3 141.5 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000025958 Creb1 ENSMUST00000185594 ENSMUSP00000139995 TRANSLATION protein_coding - CCDS15005.1 5 327.0 0.0 3.0 36.9 142.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025958 Creb1 ENSMUST00000171164 ENSMUSP00000132860 TRANSLATION protein_coding - CCDS48280.1 1 287.0 0.0 3.0 9.4 142.4 0.0 -4,-6 0.4914 3 12.936 MINOR ENSMUSG00000025958 Creb1 ENSMUST00000190979 - NO_TRANSLATION retained_intron ENSMUSG00000025958 Creb1 ENSMUST00000049932 ENSMUSP00000059973 TRANSLATION protein_coding - CCDS15004.1 5 341.0 0.0 3.0 9.2 142.4 0.0 -4,-5 0.488 3 12.912 MINOR ENSMUSG00000025958 Creb1 ENSMUST00000187811 ENSMUSP00000140649 TRANSLATION protein_coding - - 1 317.0 0.0 2.0 0.0 74.9 0.0 -4,-5 0.0128 3 5.952 MINOR ENSMUSG00000025958 Creb1 ENSMUST00000190876 ENSMUSP00000140189 TRANSLATION nonsense_mediated_decay - - 5 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025958 Creb1 ENSMUST00000087366 ENSMUSP00000084624 TRANSLATION protein_coding - CCDS15005.1 1 327.0 0.0 3.0 36.9 142.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025958 Creb1 ENSMUST00000186335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025958 Creb1 ENSMUST00000187035 - NO_TRANSLATION retained_intron ENSMUSG00000025958 Creb1 ENSMUST00000190348 ENSMUSP00000140112 TRANSLATION protein_coding - CCDS15004.1 1 341.0 0.0 3.0 9.2 142.4 0.0 -4,-5 0.488 3 12.912 MINOR ENSMUSG00000025958 Creb1 ENSMUST00000188855 - NO_TRANSLATION retained_intron ENSMUSG00000091476 Catspere2 ENSMUST00000192146 ENSMUSP00000142187 TRANSLATION nonsense_mediated_decay - - 1 775.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0273 - -2.0 MINOR ENSMUSG00000091476 Catspere2 ENSMUST00000191719 ENSMUSP00000159130 TRANSLATION nonsense_mediated_decay - - 1 598.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0073 - -2.0 MINOR ENSMUSG00000091476 Catspere2 ENSMUST00000239155 ENSMUSP00000158918 TRANSLATION protein_coding - - - 775.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0273 - 0.0 MINOR ENSMUSG00000091476 Catspere2 ENSMUST00000238506 ENSMUSP00000158854 TRANSLATION protein_coding - - - 981.0 0.0 0.0 0.0 106.7 0.0 3,-2 0.8254 - 6.0 PRINCIPAL:1 ENSMUSG00000091476 Catspere2 ENSMUST00000094273 ENSMUSP00000091828 TRANSLATION protein_coding - CCDS35802.1 1 145.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0845 - 0.0 MINOR ENSMUSG00000091476 Catspere2 ENSMUST00000239149 ENSMUSP00000158912 TRANSLATION nonsense_mediated_decay - - - 158.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0021 - -2.0 MINOR ENSMUSG00000022995 Enah ENSMUST00000195840 - NO_TRANSLATION retained_intron ENSMUSG00000022995 Enah ENSMUST00000192497 - NO_TRANSLATION retained_intron ENSMUSG00000022995 Enah ENSMUST00000192768 - NO_TRANSLATION retained_intron ENSMUSG00000022995 Enah ENSMUST00000111024 ENSMUSP00000106653 TRANSLATION protein_coding - - 5 562.0 0.0 4.498 0.0 197.9 0.0 -4,-5 0.0494 16 8.0 ALTERNATIVE:2 ENSMUSG00000022995 Enah ENSMUST00000192967 ENSMUSP00000141330 TRANSLATION protein_coding start/stop - 3 229.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022995 Enah ENSMUST00000193703 ENSMUSP00000141462 TRANSLATION protein_coding - CCDS78764.1 1 541.0 0.0 4.498 0.0 197.9 0.0 -4,-5 0.2911 14 8.0 ALTERNATIVE:2 ENSMUSG00000022995 Enah ENSMUST00000195059 ENSMUSP00000141344 TRANSLATION protein_coding - CCDS48473.1 1 785.0 0.0 4.498 0.0 197.9 0.0 -4,-5 0.4658 16 8.0 ALTERNATIVE:2 ENSMUSG00000022995 Enah ENSMUST00000195461 - NO_TRANSLATION retained_intron ENSMUSG00000022995 Enah ENSMUST00000111030 ENSMUSP00000106659 TRANSLATION protein_coding - CCDS48474.1 1 789.0 0.0 4.498 0.0 197.9 0.0 -4,-5 0.4762 16 8.0 ALTERNATIVE:2 ENSMUSG00000022995 Enah ENSMUST00000193074 ENSMUSP00000141936 TRANSLATION protein_coding - - 5 524.0 0.0 4.498 0.0 197.9 0.0 -4,-6 0.0485 14 8.0 ALTERNATIVE:2 ENSMUSG00000022995 Enah ENSMUST00000191649 - NO_TRANSLATION retained_intron ENSMUSG00000022995 Enah ENSMUST00000195703 - NO_TRANSLATION retained_intron ENSMUSG00000022995 Enah ENSMUST00000195788 - NO_TRANSLATION retained_intron ENSMUSG00000022995 Enah ENSMUST00000078719 ENSMUSP00000077781 TRANSLATION protein_coding - CCDS35811.1 1 804.0 0.0 4.498 0.0 197.9 0.0 -4,-5 1.0 17 8.0 PRINCIPAL:2 ENSMUSG00000070695 Cntnap5a ENSMUST00000043725 ENSMUSP00000035732 TRANSLATION protein_coding - CCDS35689.1 2 1304.0 0.0 7.1325 10.1 402.4 0.0 0,-3 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000026309 Ilkap ENSMUST00000027534 ENSMUSP00000027534 TRANSLATION protein_coding - CCDS15162.1 1 392.0 11.0 7.66 8.8 214.4 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000026309 Ilkap ENSMUST00000186986 ENSMUSP00000140074 TRANSLATION nonsense_mediated_decay - - 3 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026309 Ilkap ENSMUST00000186433 - NO_TRANSLATION retained_intron ENSMUSG00000026309 Ilkap ENSMUST00000190519 ENSMUSP00000140048 TRANSLATION protein_coding stop - 5 136.0 1.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026309 Ilkap ENSMUST00000187105 - NO_TRANSLATION retained_intron ENSMUSG00000026309 Ilkap ENSMUST00000187231 ENSMUSP00000139962 TRANSLATION protein_coding start - 5 166.0 5.0 3.83 0.0 154.8 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000026309 Ilkap ENSMUST00000187306 ENSMUSP00000139834 TRANSLATION protein_coding - - 5 78.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000026309 Ilkap ENSMUST00000189651 - NO_TRANSLATION retained_intron ENSMUSG00000026309 Ilkap ENSMUST00000185886 - NO_TRANSLATION retained_intron ENSMUSG00000026309 Ilkap ENSMUST00000190747 ENSMUSP00000140905 TRANSLATION protein_coding start - 3 182.0 5.0 4.48 0.0 160.8 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000026309 Ilkap ENSMUST00000187678 ENSMUSP00000140182 TRANSLATION nonsense_mediated_decay - - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026309 Ilkap ENSMUST00000191230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026309 Ilkap ENSMUST00000187049 ENSMUSP00000140752 TRANSLATION nonsense_mediated_decay start - 1 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000189496 ENSMUSP00000139682 TRANSLATION protein_coding stop - 5 423.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.002 7 -2.0 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000187818 ENSMUSP00000140917 TRANSLATION protein_coding stop - 3 65.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000185720 - NO_TRANSLATION retained_intron ENSMUSG00000026219 Trip12 ENSMUST00000027421 ENSMUSP00000027421 TRANSLATION protein_coding - CCDS35633.1 5 2025.0 0.0 7.841 8.3 354.9 0.0 -4,-7 1.0 47 15.0 PRINCIPAL:1 ENSMUSG00000026219 Trip12 ENSMUST00000189670 ENSMUSP00000140789 TRANSLATION protein_coding start - 5 830.0 0.0 4.816 0.0 286.2 0.0 -4,-6 0.0063 20 -2.0 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000185567 - NO_TRANSLATION retained_intron ENSMUSG00000026219 Trip12 ENSMUST00000186465 ENSMUSP00000140224 TRANSLATION protein_coding - CCDS35633.1 5 2025.0 0.0 7.841 8.3 354.9 0.0 -4,-7 1.0 47 15.0 PRINCIPAL:1 ENSMUSG00000026219 Trip12 ENSMUST00000186894 ENSMUSP00000140267 TRANSLATION protein_coding stop - 1 982.0 0.0 3.025 0.0 68.7 0.0 -4,-7 0.0066 21 -2.0 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000190474 - NO_TRANSLATION retained_intron ENSMUSG00000026219 Trip12 ENSMUST00000187733 ENSMUSP00000140675 TRANSLATION nonsense_mediated_decay start - 3 33.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0052 - -2.0 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000186648 ENSMUSP00000139563 TRANSLATION protein_coding - - 5 1992.0 0.0 7.466 2.1 286.2 0.0 -4,-7 0.2367 47 7.581 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000189841 ENSMUSP00000140879 TRANSLATION nonsense_mediated_decay start - 5 98.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000185909 ENSMUSP00000139986 TRANSLATION nonsense_mediated_decay - - 5 346.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0012 6 -2.0 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000190067 ENSMUSP00000140817 TRANSLATION protein_coding stop - 1 146.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000190125 - NO_TRANSLATION retained_intron ENSMUSG00000026219 Trip12 ENSMUST00000191187 - NO_TRANSLATION retained_intron ENSMUSG00000026219 Trip12 ENSMUST00000190464 ENSMUSP00000141035 TRANSLATION protein_coding start/stop - 3 213.0 0.0 0.75 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000026219 Trip12 ENSMUST00000185672 - NO_TRANSLATION retained_intron ENSMUSG00000026659 Dusp12 ENSMUST00000046476 ENSMUSP00000044320 TRANSLATION nonsense_mediated_decay - - 1 163.0 8.0 3.528 0.0 86.8 0.0 -4,-6 0.0006 1 -2.0 MINOR ENSMUSG00000026659 Dusp12 ENSMUST00000170420 ENSMUSP00000129515 TRANSLATION nonsense_mediated_decay - - 1 141.0 0.0 2.3 0.0 27.6 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026659 Dusp12 ENSMUST00000027970 ENSMUSP00000027970 TRANSLATION protein_coding - CCDS15474.1 1 339.0 12.0 4.66 5.5 94.3 0.0 -4,-6 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000026659 Dusp12 ENSMUST00000166393 ENSMUSP00000130507 TRANSLATION nonsense_mediated_decay start - 5 138.0 0.0 2.3 0.0 27.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026659 Dusp12 ENSMUST00000171447 ENSMUSP00000130683 TRANSLATION protein_coding start - 5 180.0 9.0 3.66 0.0 89.4 0.0 -4,-5 0.0017 2 -2.0 MINOR ENSMUSG00000026659 Dusp12 ENSMUST00000172042 ENSMUSP00000129530 TRANSLATION protein_coding stop - 5 34.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026659 Dusp12 ENSMUST00000163252 ENSMUSP00000126676 TRANSLATION nonsense_mediated_decay start - 1 137.0 0.0 2.3 0.0 27.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000118219 Gm29695 ENSMUST00000188175 ENSMUSP00000157559 TRANSLATION protein_coding - - 1 33.0 0.0 0.0 3.0 0.0 0.0 -4,-6 0.6172 - 1.0 PRINCIPAL:1 ENSMUSG00000118219 Gm29695 ENSMUST00000189062 ENSMUSP00000157882 TRANSLATION protein_coding - - 1 33.0 0.0 0.0 3.0 0.0 0.0 -4,-6 0.6172 - 1.0 PRINCIPAL:1 ENSMUSG00000118219 Gm29695 ENSMUST00000185223 ENSMUSP00000157727 TRANSLATION protein_coding - - 3 33.0 0.0 0.0 3.0 0.0 0.0 -4,-6 0.6172 - 1.0 PRINCIPAL:1 ENSMUSG00000026197 Zfand2b ENSMUST00000027394 ENSMUSP00000027394 TRANSLATION protein_coding - CCDS15064.1 1 257.0 21.0 5.05 11.8 104.2 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000026197 Zfand2b ENSMUST00000161657 - NO_TRANSLATION retained_intron ENSMUSG00000026197 Zfand2b ENSMUST00000160439 ENSMUSP00000125086 TRANSLATION protein_coding - CCDS15064.1 5 257.0 21.0 5.05 11.8 104.2 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000026197 Zfand2b ENSMUST00000161106 - NO_TRANSLATION retained_intron ENSMUSG00000026197 Zfand2b ENSMUST00000162768 ENSMUSP00000124552 TRANSLATION protein_coding stop - 5 218.0 21.0 4.3 0.0 104.2 0.0 -4,-5 0.015 5 -2.0 MINOR ENSMUSG00000026197 Zfand2b ENSMUST00000160033 - NO_TRANSLATION retained_intron ENSMUSG00000026197 Zfand2b ENSMUST00000160282 - NO_TRANSLATION retained_intron ENSMUSG00000026197 Zfand2b ENSMUST00000186227 ENSMUSP00000139757 TRANSLATION protein_coding start - 3 255.0 19.0 4.65 0.0 96.4 0.0 -4,-6 0.0328 5 -2.0 MINOR ENSMUSG00000026197 Zfand2b ENSMUST00000160903 - NO_TRANSLATION retained_intron ENSMUSG00000079164 Tlr5 ENSMUST00000193539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079164 Tlr5 ENSMUST00000193687 ENSMUSP00000141318 TRANSLATION protein_coding - CCDS35815.1 1 873.0 0.0 1.0 1.0 230.9 1.0 -4,-7 0.8408 4 8.0 ALTERNATIVE:2 ENSMUSG00000079164 Tlr5 ENSMUST00000191820 ENSMUSP00000141458 TRANSLATION protein_coding - - - 859.0 0.0 1.0 2.3 230.9 1.0 -3,-5 1.0 4 9.0 PRINCIPAL:4 ENSMUSG00000079164 Tlr5 ENSMUST00000195614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026670 Uap1 ENSMUST00000027981 ENSMUSP00000027981 TRANSLATION protein_coding - CCDS15467.1 1 521.0 21.0 8.75 22.9 294.8 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:4 ENSMUSG00000026670 Uap1 ENSMUST00000111350 ENSMUSP00000106982 TRANSLATION protein_coding - CCDS83631.1 1 505.0 21.0 8.75 22.9 295.0 0.0 -4,-5 0.9953 15 16.0 ALTERNATIVE:1 ENSMUSG00000026670 Uap1 ENSMUST00000161112 - NO_TRANSLATION retained_intron ENSMUSG00000026670 Uap1 ENSMUST00000160848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026670 Uap1 ENSMUST00000191690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026670 Uap1 ENSMUST00000161492 - NO_TRANSLATION retained_intron ENSMUSG00000026670 Uap1 ENSMUST00000191797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026670 Uap1 ENSMUST00000162253 - NO_TRANSLATION retained_intron ENSMUSG00000026670 Uap1 ENSMUST00000111351 ENSMUSP00000106983 TRANSLATION protein_coding - CCDS83632.1 1 522.0 21.0 8.5 22.9 293.3 0.0 -4,-5 0.9561 16 15.502 ALTERNATIVE:1 ENSMUSG00000040596 Pogk ENSMUST00000127596 ENSMUSP00000120963 TRANSLATION protein_coding - - 3 117.0 0.0 1.0 0.0 63.7 0.0 -4,-5 0.0 - 4.35 MINOR ENSMUSG00000040596 Pogk ENSMUST00000131487 ENSMUSP00000116477 TRANSLATION protein_coding - CCDS35762.1 1 614.0 0.0 1.6 0.1 346.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000040596 Pogk ENSMUST00000128861 ENSMUSP00000118270 TRANSLATION protein_coding - CCDS35762.1 1 614.0 0.0 1.6 0.1 346.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000040596 Pogk ENSMUST00000169324 ENSMUSP00000127395 TRANSLATION protein_coding - CCDS48432.1 3 626.0 0.0 1.6 0.1 346.0 0.0 -4,-1 0.5526 - 8.0 ALTERNATIVE:2 ENSMUSG00000040596 Pogk ENSMUST00000148243 ENSMUSP00000118877 TRANSLATION nonsense_mediated_decay - - 1 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040596 Pogk ENSMUST00000135673 ENSMUSP00000120352 TRANSLATION protein_coding - CCDS48432.1 1 626.0 0.0 1.6 0.1 346.0 0.0 -4,-1 0.5526 - 8.0 ALTERNATIVE:2 ENSMUSG00000046330 Rpl37a ENSMUST00000212432 - NO_TRANSLATION retained_intron ENSMUSG00000046330 Rpl37a ENSMUST00000211963 - NO_TRANSLATION retained_intron ENSMUSG00000046330 Rpl37a ENSMUST00000212335 ENSMUSP00000148267 TRANSLATION nonsense_mediated_decay start - 3 60.0 4.0 1.25 0.0 80.7 0.0 -4,-7 0.0005 2 -2.0 MINOR ENSMUSG00000046330 Rpl37a ENSMUST00000059980 ENSMUSP00000058919 TRANSLATION protein_coding - CCDS35610.1 1 92.0 4.0 2.75 33.7 160.0 0.0 -4,-6 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000026560 Fmo9 ENSMUST00000027843 ENSMUSP00000027843 TRANSLATION protein_coding - CCDS15453.1 1 539.0 46.0 8.08 4.2 830.4 1.0 -3,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000026560 Fmo9 ENSMUST00000148677 ENSMUSP00000114750 TRANSLATION protein_coding - CCDS83628.1 1 488.0 31.0 6.75 0.0 731.1 1.0 -4,-6 0.0432 - 3.384 MINOR ENSMUSG00000026611 Spata17 ENSMUST00000183656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026611 Spata17 ENSMUST00000183931 ENSMUSP00000139329 TRANSLATION protein_coding stop - 5 149.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 1 -2.0 MINOR ENSMUSG00000026611 Spata17 ENSMUST00000110945 ENSMUSP00000106570 TRANSLATION protein_coding - CCDS48479.1 1 192.0 0.0 1.8 0.0 53.5 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000026611 Spata17 ENSMUST00000027908 ENSMUSP00000027908 TRANSLATION protein_coding - CCDS15604.1 2 379.0 0.0 1.8 0.3 53.5 0.0 -4,-5 0.33 1 8.0 ALTERNATIVE:2 ENSMUSG00000026611 Spata17 ENSMUST00000184543 ENSMUSP00000139009 TRANSLATION protein_coding - - 1 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000026611 Spata17 ENSMUST00000183996 ENSMUSP00000139073 TRANSLATION protein_coding stop - 3 149.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000026611 Spata17 ENSMUST00000183469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026611 Spata17 ENSMUST00000183819 ENSMUSP00000138855 TRANSLATION protein_coding - CCDS15604.1 5 379.0 0.0 1.8 0.3 53.5 0.0 -4,-5 0.33 1 8.0 ALTERNATIVE:2 ENSMUSG00000045658 Pid1 ENSMUST00000177458 ENSMUSP00000135120 TRANSLATION protein_coding - - 2 97.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000045658 Pid1 ENSMUST00000176559 ENSMUSP00000135164 TRANSLATION protein_coding - - 2 203.0 0.0 0.25 19.6 67.2 0.0 -4,-6 0.7534 4 14.872 MINOR ENSMUSG00000045658 Pid1 ENSMUST00000176720 ENSMUSP00000134961 TRANSLATION protein_coding - - 5 100.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000045658 Pid1 ENSMUST00000187992 - NO_TRANSLATION retained_intron ENSMUSG00000045658 Pid1 ENSMUST00000168574 ENSMUSP00000127716 TRANSLATION protein_coding - CCDS15104.2 1 217.0 0.0 0.25 26.9 67.2 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000045658 Pid1 ENSMUST00000176822 ENSMUSP00000135425 TRANSLATION protein_coding - - 2 80.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000045658 Pid1 ENSMUST00000175996 ENSMUSP00000134979 TRANSLATION protein_coding - - 3 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000045658 Pid1 ENSMUST00000175948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026020 Nop58 ENSMUST00000191088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026020 Nop58 ENSMUST00000189919 ENSMUSP00000141192 TRANSLATION nonsense_mediated_decay start - 3 146.0 0.0 4.24 0.0 53.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026020 Nop58 ENSMUST00000187837 ENSMUSP00000140038 TRANSLATION protein_coding start/stop - 5 213.0 0.0 3.205 0.0 143.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000026020 Nop58 ENSMUST00000189289 - NO_TRANSLATION retained_intron ENSMUSG00000026020 Nop58 ENSMUST00000185772 ENSMUSP00000139474 TRANSLATION protein_coding stop - 3 20.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026020 Nop58 ENSMUST00000190759 - NO_TRANSLATION retained_intron ENSMUSG00000026020 Nop58 ENSMUST00000186044 - NO_TRANSLATION retained_intron ENSMUSG00000026020 Nop58 ENSMUST00000187491 ENSMUSP00000140053 TRANSLATION nonsense_mediated_decay start - 5 60.0 0.0 0.66 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026020 Nop58 ENSMUST00000027174 ENSMUSP00000027174 TRANSLATION protein_coding - - 5 444.0 0.0 12.582 0.0 364.5 0.0 -4,-5 0.0539 14 7.85 ALTERNATIVE:2 ENSMUSG00000026020 Nop58 ENSMUST00000188390 ENSMUSP00000139568 TRANSLATION protein_coding start/stop - 5 195.0 0.0 3.917 0.0 136.4 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000026020 Nop58 ENSMUST00000189327 ENSMUSP00000139517 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 1.75 0.0 80.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026020 Nop58 ENSMUST00000191142 ENSMUSP00000140250 TRANSLATION protein_coding - CCDS35587.1 1 536.0 0.0 12.657 0.0 364.5 0.0 -4,-5 1.0 16 8.0 PRINCIPAL:2 ENSMUSG00000026020 Nop58 ENSMUST00000185368 - NO_TRANSLATION retained_intron ENSMUSG00000026020 Nop58 ENSMUST00000190265 ENSMUSP00000141100 TRANSLATION nonsense_mediated_decay start - 5 191.0 0.0 5.25 0.0 151.2 0.0 -3,-6 0.0 5 -2.0 MINOR ENSMUSG00000026020 Nop58 ENSMUST00000190231 ENSMUSP00000140581 TRANSLATION protein_coding stop - 2 28.0 0.0 1.16 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041570 Camsap2 ENSMUST00000194730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041570 Camsap2 ENSMUST00000192933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041570 Camsap2 ENSMUST00000194808 ENSMUSP00000142160 TRANSLATION protein_coding start - 1 814.0 0.0 2.0 0.0 272.5 0.0 -4,-7 0.0421 18 -2.0 MINOR ENSMUSG00000041570 Camsap2 ENSMUST00000048309 ENSMUSP00000041920 TRANSLATION protein_coding - - 5 1478.0 0.0 2.0 0.0 395.3 0.0 -4,-6 0.2697 30 8.0 ALTERNATIVE:2 ENSMUSG00000041570 Camsap2 ENSMUST00000192314 ENSMUSP00000142299 TRANSLATION protein_coding - CCDS83598.1 1 1472.0 0.0 2.0 3.1 395.3 0.0 -4,-6 0.8564 30 8.75 ALTERNATIVE:2 ENSMUSG00000041570 Camsap2 ENSMUST00000192001 ENSMUSP00000142166 TRANSLATION protein_coding - CCDS83597.1 1 1461.0 0.0 2.0 3.8 395.3 0.0 -4,-6 1.0 30 9.0 PRINCIPAL:4 ENSMUSG00000058017 Serpinb3d ENSMUST00000023861 ENSMUSP00000023861 TRANSLATION protein_coding - CCDS15215.1 1 387.0 0.0 6.2 8.0 429.9 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026102 Inpp1 ENSMUST00000159725 ENSMUSP00000123977 TRANSLATION protein_coding stop - 3 80.0 1.0 1.5 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026102 Inpp1 ENSMUST00000162576 ENSMUSP00000124890 TRANSLATION protein_coding stop - 5 90.0 2.0 1.83 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026102 Inpp1 ENSMUST00000159607 - NO_TRANSLATION retained_intron ENSMUSG00000026102 Inpp1 ENSMUST00000027271 ENSMUSP00000027271 TRANSLATION protein_coding - CCDS14947.1 1 396.0 10.0 5.58 9.9 194.6 0.0 -4,-7 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000026102 Inpp1 ENSMUST00000177279 ENSMUSP00000135225 TRANSLATION nonsense_mediated_decay - - 5 110.0 1.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026102 Inpp1 ENSMUST00000162351 - NO_TRANSLATION retained_intron ENSMUSG00000014980 Tsen15 ENSMUST00000159270 - NO_TRANSLATION retained_intron ENSMUSG00000014980 Tsen15 ENSMUST00000163027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014980 Tsen15 ENSMUST00000188105 - NO_TRANSLATION retained_intron ENSMUSG00000014980 Tsen15 ENSMUST00000161717 - NO_TRANSLATION retained_intron ENSMUSG00000014980 Tsen15 ENSMUST00000159717 - NO_TRANSLATION retained_intron ENSMUSG00000014980 Tsen15 ENSMUST00000015124 ENSMUSP00000015124 TRANSLATION protein_coding - CCDS15363.1 1 168.0 0.0 3.48 7.2 81.3 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000014980 Tsen15 ENSMUST00000162371 ENSMUSP00000124391 TRANSLATION protein_coding - - 5 128.0 0.0 2.216 0.1 33.4 0.0 -4,-5 0.0025 2 5.94 MINOR ENSMUSG00000041879 Ipo9 ENSMUST00000162858 - NO_TRANSLATION retained_intron ENSMUSG00000041879 Ipo9 ENSMUST00000159173 ENSMUSP00000123869 TRANSLATION nonsense_mediated_decay start - 5 52.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041879 Ipo9 ENSMUST00000161258 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041879 Ipo9 ENSMUST00000159487 - NO_TRANSLATION retained_intron ENSMUSG00000041879 Ipo9 ENSMUST00000161934 ENSMUSP00000124210 TRANSLATION protein_coding start - 3 171.0 0.0 2.25 0.0 0.0 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000041879 Ipo9 ENSMUST00000161032 ENSMUSP00000124779 TRANSLATION nonsense_mediated_decay - - 1 655.0 0.0 13.75 0.0 37.0 0.0 -2,-4 0.0239 8 -2.0 MINOR ENSMUSG00000041879 Ipo9 ENSMUST00000159017 - NO_TRANSLATION retained_intron ENSMUSG00000041879 Ipo9 ENSMUST00000161838 ENSMUSP00000125646 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 1.0 0.0 0.0 0.0 -2,-4 0.0 - -2.0 MINOR ENSMUSG00000041879 Ipo9 ENSMUST00000161135 - NO_TRANSLATION retained_intron ENSMUSG00000041879 Ipo9 ENSMUST00000161750 - NO_TRANSLATION retained_intron ENSMUSG00000041879 Ipo9 ENSMUST00000161704 - NO_TRANSLATION retained_intron ENSMUSG00000041879 Ipo9 ENSMUST00000041023 ENSMUSP00000036093 TRANSLATION protein_coding - CCDS35719.1 1 1040.0 0.0 19.75 4.2 37.0 0.0 -2,-4 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000041879 Ipo9 ENSMUST00000159089 - NO_TRANSLATION retained_intron ENSMUSG00000041879 Ipo9 ENSMUST00000161189 ENSMUSP00000124492 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 1.0 0.0 0.0 0.0 -2,-4 0.0 1 -2.0 MINOR ENSMUSG00000072295 C2cd6 ENSMUST00000149784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072295 C2cd6 ENSMUST00000238601 ENSMUSP00000158810 TRANSLATION protein_coding - - - 724.0 0.0 0.0 0.0 588.1 0.0 -4,-7 0.1295 6 2.0 ALTERNATIVE:2 ENSMUSG00000072295 C2cd6 ENSMUST00000097080 ENSMUSP00000094845 TRANSLATION protein_coding - CCDS14982.2 2 557.0 0.0 0.0 0.0 588.1 0.0 -4,-7 1.0 5 2.0 PRINCIPAL:2 ENSMUSG00000072295 C2cd6 ENSMUST00000238949 ENSMUSP00000159118 TRANSLATION protein_coding - - - 2282.0 0.0 0.0 0.0 588.1 0.0 -4,-7 0.4243 12 2.0 ALTERNATIVE:2 ENSMUSG00000026380 Tfcp2l1 ENSMUST00000027629 ENSMUSP00000027629 TRANSLATION protein_coding - CCDS35691.1 1 479.0 0.0 2.09 19.1 186.9 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000026380 Tfcp2l1 ENSMUST00000190652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090394 4930523C07Rik ENSMUST00000168250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090394 4930523C07Rik ENSMUST00000060298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090394 4930523C07Rik ENSMUST00000097513 ENSMUSP00000137410 TRANSLATION protein_coding - CCDS48410.1 - 99.0 0.0 0.8 18.7 0.0 1.0 -4,-7 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000090394 4930523C07Rik ENSMUST00000163892 ENSMUSP00000156718 TRANSLATION protein_coding - CCDS48410.1 1 99.0 0.0 0.8 18.7 0.0 1.0 -4,-7 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000090394 4930523C07Rik ENSMUST00000165923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090394 4930523C07Rik ENSMUST00000191933 - NO_TRANSLATION retained_intron ENSMUSG00000037434 Slc30a1 ENSMUST00000044954 ENSMUSP00000042410 TRANSLATION protein_coding - CCDS15625.1 1 503.0 0.0 0.266 6.9 139.4 5.0 1,-3 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000037434 Slc30a1 ENSMUST00000161756 ENSMUSP00000124176 TRANSLATION protein_coding start - 3 122.0 0.0 0.0 0.0 32.0 2.0 0,-4 0.0008 2 -2.0 MINOR ENSMUSG00000026114 Cnga3 ENSMUST00000191981 ENSMUSP00000142235 TRANSLATION protein_coding stop - 5 71.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026114 Cnga3 ENSMUST00000027288 ENSMUSP00000027288 TRANSLATION protein_coding - CCDS14890.1 1 631.0 14.0 2.8 0.4 267.7 3.0 -4,-6 0.1409 - 17.502 MINOR ENSMUSG00000026114 Cnga3 ENSMUST00000194195 ENSMUSP00000142075 TRANSLATION protein_coding - CCDS14890.1 5 631.0 14.0 2.8 0.4 267.7 3.0 -4,-6 0.1409 - 17.502 MINOR ENSMUSG00000026114 Cnga3 ENSMUST00000195272 ENSMUSP00000142175 TRANSLATION protein_coding - CCDS78566.1 5 669.0 14.0 3.05 6.3 267.7 3.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000026571 Dcaf6 ENSMUST00000195686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026571 Dcaf6 ENSMUST00000193353 - NO_TRANSLATION retained_intron ENSMUSG00000026571 Dcaf6 ENSMUST00000195220 ENSMUSP00000141292 TRANSLATION protein_coding start/stop - 3 151.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000026571 Dcaf6 ENSMUST00000194869 ENSMUSP00000141401 TRANSLATION protein_coding start/stop - 3 283.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0017 5 -2.0 MINOR ENSMUSG00000026571 Dcaf6 ENSMUST00000027856 ENSMUSP00000027856 TRANSLATION protein_coding - CCDS48424.1 1 876.0 0.0 4.3875 0.0 31.4 0.0 -4,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000046486 Or6k6 ENSMUST00000214446 ENSMUSP00000151011 TRANSLATION protein_coding - CCDS48456.1 5 307.0 0.0 1.0 0.1 210.5 6.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046486 Or6k6 ENSMUST00000063030 ENSMUSP00000059596 TRANSLATION protein_coding - CCDS48456.1 - 307.0 0.0 1.0 0.1 210.5 6.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026259 Ngef ENSMUST00000166463 - NO_TRANSLATION retained_intron ENSMUSG00000026259 Ngef ENSMUST00000068681 ENSMUSP00000066894 TRANSLATION protein_coding - CCDS48307.1 1 710.0 0.0 6.3175 2.0 193.6 0.0 -4,-5 0.475 19 12.417 MINOR ENSMUSG00000026259 Ngef ENSMUST00000027477 ENSMUSP00000027477 TRANSLATION protein_coding - CCDS48306.1 1 620.0 0.0 6.3175 8.2 193.6 0.0 -3,-6 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000026259 Ngef ENSMUST00000168235 ENSMUSP00000127674 TRANSLATION protein_coding start - 3 245.0 0.0 3.5175 0.0 27.7 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000026069 Il1rl1 ENSMUST00000097772 ENSMUSP00000095379 TRANSLATION protein_coding - CCDS35548.1 1 567.0 0.0 6.275 0.1 202.2 1.0 1,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000026069 Il1rl1 ENSMUST00000053043 ENSMUSP00000054914 TRANSLATION protein_coding - CCDS35548.1 1 567.0 0.0 6.275 0.1 202.2 1.0 1,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000026069 Il1rl1 ENSMUST00000174335 ENSMUSP00000134351 TRANSLATION protein_coding - CCDS56626.1 1 337.0 0.0 5.055 0.1 30.5 0.0 1,-3 0.0304 - 3.558 MINOR ENSMUSG00000026069 Il1rl1 ENSMUST00000173881 ENSMUSP00000134225 TRANSLATION protein_coding stop - 2 65.0 0.0 0.575 0.0 0.0 0.0 2,-3 0.0024 - -2.0 MINOR ENSMUSG00000026069 Il1rl1 ENSMUST00000173514 ENSMUSP00000133784 TRANSLATION protein_coding - CCDS56626.1 1 337.0 0.0 5.055 0.1 30.5 0.0 1,-3 0.0304 - 3.558 MINOR ENSMUSG00000025981 Coq10b ENSMUST00000185474 - NO_TRANSLATION retained_intron ENSMUSG00000025981 Coq10b ENSMUST00000185918 - NO_TRANSLATION retained_intron ENSMUSG00000025981 Coq10b ENSMUST00000087617 ENSMUSP00000084899 TRANSLATION protein_coding - CCDS14959.1 1 192.0 0.0 3.0 3.1 77.3 0.0 -4,0 0.2824 4 12.339 MINOR ENSMUSG00000025981 Coq10b ENSMUST00000027125 ENSMUSP00000027125 TRANSLATION protein_coding - CCDS35568.1 1 242.0 0.0 3.2 9.5 76.3 0.0 -4,0 1.0 5 14.922 PRINCIPAL:1 ENSMUSG00000051703 Tmem198 ENSMUST00000050899 ENSMUSP00000057865 TRANSLATION protein_coding - CCDS15076.1 1 360.0 0.0 1.275 16.0 160.4 7.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000051703 Tmem198 ENSMUST00000187411 ENSMUSP00000140795 TRANSLATION protein_coding start/stop - 2 142.0 0.0 0.7 0.0 30.5 1.0 -4,-2 0.0018 - -2.0 MINOR ENSMUSG00000051703 Tmem198 ENSMUST00000113575 ENSMUSP00000109205 TRANSLATION protein_coding - CCDS15076.1 1 360.0 0.0 1.275 16.0 160.4 7.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000051703 Tmem198 ENSMUST00000148980 ENSMUSP00000116977 TRANSLATION protein_coding stop - 3 150.0 0.0 0.775 0.0 0.0 1.0 -4,-2 0.0015 - -2.0 MINOR ENSMUSG00000101303 B020011L13Rik ENSMUST00000188801 ENSMUSP00000140211 TRANSLATION protein_coding - - 3 412.0 46.0 1.0 0.0 359.1 0.0 -4,-7 0.8326 - 18.0 PRINCIPAL:1 ENSMUSG00000026491 Ahctf1 ENSMUST00000194536 - NO_TRANSLATION retained_intron ENSMUSG00000026491 Ahctf1 ENSMUST00000027768 ENSMUSP00000027768 TRANSLATION protein_coding - CCDS15564.1 1 2243.0 0.0 7.33 0.0 1189.1 0.0 -4,-6 1.0 46 12.0 PRINCIPAL:1 ENSMUSG00000026491 Ahctf1 ENSMUST00000127250 ENSMUSP00000120551 TRANSLATION nonsense_mediated_decay start - 2 35.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0084 - -2.0 MINOR ENSMUSG00000026491 Ahctf1 ENSMUST00000125816 ENSMUSP00000119738 TRANSLATION nonsense_mediated_decay start - 3 104.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026491 Ahctf1 ENSMUST00000145968 ENSMUSP00000115795 TRANSLATION protein_coding start/stop - 5 176.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026491 Ahctf1 ENSMUST00000140489 ENSMUSP00000115253 TRANSLATION protein_coding start - 1 116.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000026491 Ahctf1 ENSMUST00000192645 - NO_TRANSLATION retained_intron ENSMUSG00000026491 Ahctf1 ENSMUST00000151734 - NO_TRANSLATION retained_intron ENSMUSG00000026491 Ahctf1 ENSMUST00000147137 - NO_TRANSLATION retained_intron ENSMUSG00000010290 AI597479 ENSMUST00000010434 ENSMUSP00000010434 TRANSLATION protein_coding - CCDS14921.1 1 232.0 1.0 1.8 12.5 269.6 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000045968 Teddm2 ENSMUST00000059607 ENSMUSP00000050017 TRANSLATION protein_coding - CCDS15378.1 - 260.0 0.0 2.0 5.2 87.9 7.0 -2,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000045968 Teddm2 ENSMUST00000190620 - NO_TRANSLATION retained_intron ENSMUSG00000045968 Teddm2 ENSMUST00000123490 ENSMUSP00000115023 TRANSLATION protein_coding - - 1 207.0 0.0 1.0 0.0 87.9 7.0 -3,-5 0.036 - 9.0 MINOR ENSMUSG00000062497 Or9s15 ENSMUST00000190844 ENSMUSP00000140373 TRANSLATION protein_coding - CCDS15173.1 5 323.0 0.0 1.0 0.4 178.2 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062497 Or9s15 ENSMUST00000216444 ENSMUSP00000150254 TRANSLATION protein_coding - CCDS15173.1 5 323.0 0.0 1.0 0.4 178.2 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062497 Or9s15 ENSMUST00000073748 ENSMUSP00000073422 TRANSLATION protein_coding - CCDS15173.1 - 323.0 0.0 1.0 0.4 178.2 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058267 Mrps14 ENSMUST00000135680 ENSMUSP00000120075 TRANSLATION protein_coding - CCDS15405.1 1 128.0 0.0 2.6 16.7 80.7 0.0 -4,0 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000058267 Mrps14 ENSMUST00000097193 ENSMUSP00000107285 TRANSLATION protein_coding - CCDS83613.1 2 122.0 0.0 2.6 0.0 80.7 0.0 -4,-5 0.1692 1 12.0 MINOR ENSMUSG00000058267 Mrps14 ENSMUST00000078878 ENSMUSP00000138072 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000055866 Per2 ENSMUST00000069620 ENSMUSP00000066620 TRANSLATION protein_coding - CCDS35663.1 1 1257.0 0.0 7.5 0.4 345.2 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000055866 Per2 ENSMUST00000185298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026171 Rnf25 ENSMUST00000132081 ENSMUSP00000115350 TRANSLATION protein_coding stop - 5 25.0 0.0 0.73 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026171 Rnf25 ENSMUST00000128491 - NO_TRANSLATION retained_intron ENSMUSG00000026171 Rnf25 ENSMUST00000135140 ENSMUSP00000138040 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 1.325 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026171 Rnf25 ENSMUST00000149649 - NO_TRANSLATION retained_intron ENSMUSG00000026171 Rnf25 ENSMUST00000154874 ENSMUSP00000120646 TRANSLATION protein_coding stop - 3 102.0 0.0 3.51 0.0 48.2 0.0 -4,-7 0.0003 1 -2.0 MINOR ENSMUSG00000026171 Rnf25 ENSMUST00000027357 ENSMUSP00000027357 TRANSLATION protein_coding - CCDS15052.1 1 456.0 8.0 7.115 11.0 94.9 0.0 -4,-5 0.9938 8 16.598 ALTERNATIVE:1 ENSMUSG00000026171 Rnf25 ENSMUST00000127938 ENSMUSP00000116973 TRANSLATION protein_coding stop - 5 108.0 8.0 2.44 0.0 28.8 0.0 -4,-5 0.0005 4 -2.0 MINOR ENSMUSG00000026171 Rnf25 ENSMUST00000113721 ENSMUSP00000109350 TRANSLATION protein_coding - CCDS78620.1 1 455.0 8.0 7.315 11.0 94.9 0.0 -4,-5 1.0 9 17.0 PRINCIPAL:3 ENSMUSG00000026171 Rnf25 ENSMUST00000136078 ENSMUSP00000117692 TRANSLATION protein_coding start/stop - 5 123.0 0.0 3.34 0.0 66.4 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000026171 Rnf25 ENSMUST00000151003 - NO_TRANSLATION retained_intron ENSMUSG00000026039 Sgo2a ENSMUST00000027202 ENSMUSP00000027202 TRANSLATION protein_coding - CCDS35574.1 1 1164.0 0.0 2.25 0.0 0.0 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000026039 Sgo2a ENSMUST00000190746 - NO_TRANSLATION retained_intron ENSMUSG00000026248 Mrpl44 ENSMUST00000027464 ENSMUSP00000027464 TRANSLATION protein_coding - CCDS35629.1 1 333.0 3.0 3.8 12.5 0.0 0.0 -1,3 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000026248 Mrpl44 ENSMUST00000189176 - NO_TRANSLATION retained_intron ENSMUSG00000061024 Rrs1 ENSMUST00000072079 ENSMUSP00000071955 TRANSLATION protein_coding - CCDS14811.1 - 365.0 0.0 0.8 6.1 196.4 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000026526 Fh1 ENSMUST00000133218 - NO_TRANSLATION retained_intron ENSMUSG00000026526 Fh1 ENSMUST00000154956 ENSMUSP00000135140 TRANSLATION nonsense_mediated_decay - - 5 61.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0004 1 -2.0 MINOR ENSMUSG00000026526 Fh1 ENSMUST00000027810 ENSMUSP00000027810 TRANSLATION protein_coding - CCDS15547.1 1 507.0 11.0 9.75 7.2 509.0 0.0 -3,1 1.0 21 20.0 PRINCIPAL:1 ENSMUSG00000026526 Fh1 ENSMUST00000176740 ENSMUSP00000135385 TRANSLATION protein_coding start - 3 167.0 2.0 3.75 0.0 96.7 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000026526 Fh1 ENSMUST00000130996 - NO_TRANSLATION retained_intron ENSMUSG00000042751 Nmnat2 ENSMUST00000043313 ENSMUSP00000041110 TRANSLATION protein_coding - CCDS15368.1 1 307.0 15.0 3.0 33.7 87.9 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000042751 Nmnat2 ENSMUST00000187569 - NO_TRANSLATION retained_intron ENSMUSG00000042751 Nmnat2 ENSMUST00000185241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042751 Nmnat2 ENSMUST00000190960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042751 Nmnat2 ENSMUST00000186368 ENSMUSP00000140585 TRANSLATION nonsense_mediated_decay - - 1 279.0 15.0 3.0 0.0 87.0 0.0 -4,-7 0.0232 4 -2.0 MINOR ENSMUSG00000042751 Nmnat2 ENSMUST00000186621 ENSMUSP00000140497 TRANSLATION protein_coding stop - 3 184.0 6.0 2.25 0.0 41.6 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000026575 Nme7 ENSMUST00000193591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026575 Nme7 ENSMUST00000192710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026575 Nme7 ENSMUST00000193683 ENSMUSP00000141963 TRANSLATION protein_coding - CCDS15436.2 1 395.0 20.0 9.33 0.4 268.4 0.0 -4,-2 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000026575 Nme7 ENSMUST00000193237 - NO_TRANSLATION retained_intron ENSMUSG00000026575 Nme7 ENSMUST00000086028 ENSMUSP00000083192 TRANSLATION protein_coding - CCDS78731.1 5 277.0 13.0 5.566 0.0 163.1 0.0 -4,-2 0.0128 8 1.332 MINOR ENSMUSG00000026575 Nme7 ENSMUST00000195474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026575 Nme7 ENSMUST00000191947 ENSMUSP00000141431 TRANSLATION protein_coding - CCDS15436.2 1 395.0 20.0 9.33 0.4 268.4 0.0 -4,-2 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000026575 Nme7 ENSMUST00000192225 - NO_TRANSLATION retained_intron ENSMUSG00000026575 Nme7 ENSMUST00000193808 ENSMUSP00000141771 TRANSLATION nonsense_mediated_decay - CCDS15436.2 1 395.0 20.0 9.33 0.4 268.4 0.0 -4,-2 1.0 8 -2.0 MINOR ENSMUSG00000026575 Nme7 ENSMUST00000194694 - NO_TRANSLATION retained_intron ENSMUSG00000073735 Defb18 ENSMUST00000097818 ENSMUSP00000095427 TRANSLATION protein_coding - CCDS35520.1 1 85.0 0.0 1.0 0.4 25.6 0.0 0,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026473 Glul ENSMUST00000086199 ENSMUSP00000083375 TRANSLATION protein_coding - CCDS15381.1 1 373.0 12.0 6.0 34.9 52.7 0.0 -4,-6 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000026473 Glul ENSMUST00000139476 ENSMUSP00000114377 TRANSLATION protein_coding stop - 5 198.0 3.0 4.0 0.0 0.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000026473 Glul ENSMUST00000154576 - NO_TRANSLATION retained_intron ENSMUSG00000026473 Glul ENSMUST00000140685 ENSMUSP00000123157 TRANSLATION protein_coding - CCDS15381.1 5 373.0 12.0 6.0 34.9 52.7 0.0 -4,-6 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000026473 Glul ENSMUST00000153134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047793 Sned1 ENSMUST00000172289 - NO_TRANSLATION retained_intron ENSMUSG00000047793 Sned1 ENSMUST00000165883 - NO_TRANSLATION retained_intron ENSMUSG00000047793 Sned1 ENSMUST00000062202 ENSMUSP00000050832 TRANSLATION protein_coding - CCDS35670.1 1 1403.0 48.0 14.956 0.0 629.0 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000047793 Sned1 ENSMUST00000163688 ENSMUSP00000132455 TRANSLATION protein_coding start/stop - 5 573.0 21.0 5.356 0.0 220.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000047793 Sned1 ENSMUST00000168122 - NO_TRANSLATION retained_intron ENSMUSG00000047793 Sned1 ENSMUST00000165843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051509 Or6p1 ENSMUST00000053178 ENSMUSP00000052426 TRANSLATION protein_coding - CCDS15544.1 - 317.0 0.0 1.0 13.4 177.7 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000051509 Or6p1 ENSMUST00000192358 ENSMUSP00000142051 TRANSLATION protein_coding - CCDS15544.1 2 317.0 0.0 1.0 13.4 177.7 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025917 Cops5 ENSMUST00000186528 ENSMUSP00000140633 TRANSLATION nonsense_mediated_decay - - 2 48.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025917 Cops5 ENSMUST00000027050 ENSMUSP00000027050 TRANSLATION protein_coding - CCDS14818.1 1 334.0 3.0 8.16 26.4 117.6 0.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000025917 Cops5 ENSMUST00000139578 - NO_TRANSLATION retained_intron ENSMUSG00000025917 Cops5 ENSMUST00000150509 - NO_TRANSLATION retained_intron ENSMUSG00000025917 Cops5 ENSMUST00000191296 - NO_TRANSLATION retained_intron ENSMUSG00000025917 Cops5 ENSMUST00000188619 ENSMUSP00000140115 TRANSLATION protein_coding stop - 5 210.0 3.0 4.53 0.0 117.6 0.0 -4,0 0.0077 4 -2.0 MINOR ENSMUSG00000025917 Cops5 ENSMUST00000190155 ENSMUSP00000140054 TRANSLATION nonsense_mediated_decay start - 3 147.0 3.0 3.113 0.0 112.6 0.0 -4,-7 0.0035 2 -2.0 MINOR ENSMUSG00000046836 Brox ENSMUST00000057062 ENSMUSP00000061345 TRANSLATION protein_coding - CCDS56662.1 1 411.0 0.0 10.86 36.9 142.3 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000046836 Brox ENSMUST00000194695 - NO_TRANSLATION retained_intron ENSMUSG00000046836 Brox ENSMUST00000192829 ENSMUSP00000141585 TRANSLATION protein_coding stop - 3 91.0 0.0 2.83 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000046836 Brox ENSMUST00000195054 ENSMUSP00000141629 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000046836 Brox ENSMUST00000194438 - NO_TRANSLATION retained_intron ENSMUSG00000046836 Brox ENSMUST00000194327 ENSMUSP00000141248 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000046836 Brox ENSMUST00000194089 - NO_TRANSLATION retained_intron ENSMUSG00000046836 Brox ENSMUST00000193326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046836 Brox ENSMUST00000163528 ENSMUSP00000132333 TRANSLATION protein_coding - CCDS56662.1 1 411.0 0.0 10.86 36.9 142.3 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000026436 Elk4 ENSMUST00000146188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026436 Elk4 ENSMUST00000146432 ENSMUSP00000118880 TRANSLATION protein_coding stop - 1 306.0 0.0 1.6 0.0 123.8 0.0 -4,-5 0.0438 - -2.0 MINOR ENSMUSG00000026436 Elk4 ENSMUST00000147218 ENSMUSP00000114255 TRANSLATION nonsense_mediated_decay start - 2 290.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0011 - -2.0 MINOR ENSMUSG00000026436 Elk4 ENSMUST00000086556 ENSMUSP00000083743 TRANSLATION protein_coding - CCDS35704.1 1 430.0 0.0 1.6 11.4 123.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026436 Elk4 ENSMUST00000131159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026436 Elk4 ENSMUST00000027696 ENSMUSP00000027696 TRANSLATION protein_coding - CCDS35704.1 1 430.0 0.0 1.6 11.4 123.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026436 Elk4 ENSMUST00000124579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066677 Ifi208 ENSMUST00000085876 ENSMUSP00000083039 TRANSLATION protein_coding - CCDS48451.1 1 588.0 0.0 1.4 0.0 44.2 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066677 Ifi208 ENSMUST00000169857 ENSMUSP00000128958 TRANSLATION protein_coding - CCDS48451.1 5 588.0 0.0 1.4 0.0 44.2 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066677 Ifi208 ENSMUST00000182880 - NO_TRANSLATION retained_intron ENSMUSG00000053153 Spag16 ENSMUST00000065425 ENSMUSP00000069821 TRANSLATION protein_coding - CCDS15027.1 1 639.0 0.0 6.2 0.1 123.1 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000053153 Spag16 ENSMUST00000161310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053153 Spag16 ENSMUST00000190833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053153 Spag16 ENSMUST00000187159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053153 Spag16 ENSMUST00000161131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053153 Spag16 ENSMUST00000113940 ENSMUSP00000109573 TRANSLATION protein_coding - CCDS69901.1 1 405.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0441 2 0.0 MINOR ENSMUSG00000053153 Spag16 ENSMUST00000191569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033793 Atp6v1h ENSMUST00000192029 ENSMUSP00000141440 TRANSLATION protein_coding stop - 3 77.0 0.0 2.5 0.0 72.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000033793 Atp6v1h ENSMUST00000044369 ENSMUSP00000040756 TRANSLATION protein_coding - CCDS14808.1 1 483.0 0.0 10.75 33.9 347.8 0.0 -4,-5 1.0 18 8.998 MINOR ENSMUSG00000033793 Atp6v1h ENSMUST00000194301 - NO_TRANSLATION retained_intron ENSMUSG00000033793 Atp6v1h ENSMUST00000192698 ENSMUSP00000141797 TRANSLATION protein_coding - CCDS78541.1 5 465.0 0.0 11.25 18.9 352.1 0.0 -4,-5 0.9498 18 10.176 PRINCIPAL:1 ENSMUSG00000033793 Atp6v1h ENSMUST00000194978 - NO_TRANSLATION retained_intron ENSMUSG00000033793 Atp6v1h ENSMUST00000194676 ENSMUSP00000141264 TRANSLATION protein_coding stop - 3 140.0 0.0 4.25 0.0 122.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000033793 Atp6v1h ENSMUST00000192142 - NO_TRANSLATION retained_intron ENSMUSG00000033793 Atp6v1h ENSMUST00000192847 ENSMUSP00000141636 TRANSLATION protein_coding - - 5 441.0 0.0 9.75 1.2 368.5 0.0 -4,-5 0.1004 17 3.024 MINOR ENSMUSG00000026097 Ormdl1 ENSMUST00000027266 ENSMUSP00000027266 TRANSLATION protein_coding - CCDS14952.1 1 153.0 0.0 3.0 36.9 179.7 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026097 Ormdl1 ENSMUST00000135746 - NO_TRANSLATION retained_intron ENSMUSG00000025959 Klf7 ENSMUST00000114086 ENSMUSP00000109720 TRANSLATION protein_coding - CCDS15003.1 1 301.0 12.0 2.7 18.0 63.9 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000025959 Klf7 ENSMUST00000135075 ENSMUSP00000120537 TRANSLATION protein_coding stop - 2 111.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025959 Klf7 ENSMUST00000055001 ENSMUSP00000054674 TRANSLATION protein_coding - - 1 285.0 9.0 2.2 1.1 40.4 0.0 -4,-6 0.0223 - 12.708 MINOR ENSMUSG00000026011 Ctla4 ENSMUST00000097720 ENSMUSP00000095327 TRANSLATION protein_coding - CCDS69893.1 5 174.0 0.0 1.0 7.7 54.0 0.0 0,-4 0.7451 - 10.707 MINOR ENSMUSG00000026011 Ctla4 ENSMUST00000124816 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026011 Ctla4 ENSMUST00000027164 ENSMUSP00000027164 TRANSLATION protein_coding - CCDS14993.1 1 223.0 0.0 2.45 9.9 54.0 0.0 0,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000006546 Cryba2 ENSMUST00000133833 ENSMUSP00000140298 TRANSLATION nonsense_mediated_decay - - 3 54.0 0.0 1.0 0.0 35.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006546 Cryba2 ENSMUST00000006721 ENSMUSP00000006721 TRANSLATION protein_coding - CCDS15059.1 1 197.0 0.0 4.0 23.3 191.4 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000001143 Lman2l ENSMUST00000123583 ENSMUSP00000137344 TRANSLATION nonsense_mediated_decay - - 5 75.0 0.0 0.4 0.0 0.0 0.0 0,-4 0.0035 - -2.0 MINOR ENSMUSG00000001143 Lman2l ENSMUST00000193502 - NO_TRANSLATION retained_intron ENSMUSG00000001143 Lman2l ENSMUST00000192969 ENSMUSP00000141806 TRANSLATION protein_coding start - 3 205.0 10.0 4.9 0.0 194.1 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000001143 Lman2l ENSMUST00000134594 - NO_TRANSLATION retained_intron ENSMUSG00000001143 Lman2l ENSMUST00000001171 ENSMUSP00000137028 TRANSLATION nonsense_mediated_decay - - 1 157.0 2.0 2.7 0.0 109.6 0.0 0,-4 0.0012 2 -2.0 MINOR ENSMUSG00000001143 Lman2l ENSMUST00000115011 ENSMUSP00000110663 TRANSLATION protein_coding - CCDS78563.1 5 358.0 10.0 6.52 6.9 271.5 1.0 0,-4 0.6608 8 18.756 MINOR ENSMUSG00000001143 Lman2l ENSMUST00000125304 ENSMUSP00000117200 TRANSLATION protein_coding - CCDS14878.1 1 347.0 10.0 6.85 8.8 285.7 1.0 0,-4 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000001143 Lman2l ENSMUST00000152088 ENSMUSP00000119798 TRANSLATION protein_coding start - 2 124.0 3.0 2.55 0.0 69.3 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000052688 Rab7b ENSMUST00000064679 ENSMUSP00000065456 TRANSLATION protein_coding - CCDS15272.1 1 199.0 24.0 4.1 16.8 163.6 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000052688 Rab7b ENSMUST00000136247 ENSMUSP00000123359 TRANSLATION protein_coding - - 5 106.0 14.0 2.5 0.0 44.0 0.0 -4,-6 0.0 1 2.802 MINOR ENSMUSG00000052688 Rab7b ENSMUST00000064664 ENSMUSP00000066452 TRANSLATION protein_coding - CCDS78677.1 1 157.0 21.0 3.1 4.5 129.4 0.0 -4,-6 0.0712 2 12.84 MINOR ENSMUSG00000052688 Rab7b ENSMUST00000129905 ENSMUSP00000116515 TRANSLATION protein_coding - - 2 85.0 14.0 2.1 0.0 46.4 0.0 -4,-6 0.0 1 1.998 MINOR ENSMUSG00000052688 Rab7b ENSMUST00000130848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042671 Rgs8 ENSMUST00000124500 ENSMUSP00000122518 TRANSLATION protein_coding stop - 3 98.0 0.0 1.816 0.0 46.9 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000042671 Rgs8 ENSMUST00000147700 ENSMUSP00000123565 TRANSLATION protein_coding stop - 3 115.0 0.0 2.316 0.0 61.2 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000042671 Rgs8 ENSMUST00000111814 ENSMUSP00000107445 TRANSLATION protein_coding - CCDS83607.1 3 178.0 0.0 3.981 5.3 130.5 0.0 -4,-7 0.5551 6 13.108 MINOR ENSMUSG00000042671 Rgs8 ENSMUST00000147482 ENSMUSP00000118365 TRANSLATION protein_coding stop - 3 115.0 0.0 2.481 0.0 62.1 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000042671 Rgs8 ENSMUST00000152114 ENSMUSP00000121910 TRANSLATION protein_coding stop - 5 137.0 0.0 2.816 0.0 83.6 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000042671 Rgs8 ENSMUST00000111815 ENSMUSP00000107446 TRANSLATION protein_coding - CCDS83607.1 5 178.0 0.0 3.981 5.3 130.5 0.0 -4,-7 0.5551 6 13.108 MINOR ENSMUSG00000042671 Rgs8 ENSMUST00000111812 ENSMUSP00000107443 TRANSLATION protein_coding - CCDS15375.1 5 180.0 0.0 3.816 16.5 130.5 0.0 -4,-1 1.0 6 15.67 PRINCIPAL:1 ENSMUSG00000042671 Rgs8 ENSMUST00000111810 ENSMUSP00000107441 TRANSLATION protein_coding - CCDS15375.1 1 180.0 0.0 3.816 16.5 130.5 0.0 -4,-1 1.0 6 15.67 PRINCIPAL:1 ENSMUSG00000042671 Rgs8 ENSMUST00000147794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042671 Rgs8 ENSMUST00000041776 ENSMUSP00000045715 TRANSLATION protein_coding - CCDS15375.1 1 180.0 0.0 3.816 16.5 130.5 0.0 -4,-1 1.0 6 15.67 PRINCIPAL:1 ENSMUSG00000026029 Casp8 ENSMUST00000190213 ENSMUSP00000140335 TRANSLATION protein_coding - CCDS78590.1 5 500.0 4.0 5.8 0.0 334.1 0.0 -4,-5 0.1774 16 12.0 ALTERNATIVE:2 ENSMUSG00000026029 Casp8 ENSMUST00000165549 ENSMUSP00000127375 TRANSLATION protein_coding - CCDS14979.1 1 480.0 4.0 5.8 3.5 334.1 0.0 -4,-6 1.0 16 13.0 PRINCIPAL:2 ENSMUSG00000026029 Casp8 ENSMUST00000027189 ENSMUSP00000027189 TRANSLATION protein_coding - CCDS14979.1 1 480.0 4.0 5.8 3.5 334.1 0.0 -4,-6 1.0 16 13.0 PRINCIPAL:2 ENSMUSG00000026029 Casp8 ENSMUST00000191201 ENSMUSP00000140546 TRANSLATION protein_coding - CCDS78590.1 5 500.0 4.0 5.8 0.0 334.1 0.0 -4,-5 0.1774 16 12.0 ALTERNATIVE:2 ENSMUSG00000114582 3110040M04Rik ENSMUST00000224012 ENSMUSP00000153442 TRANSLATION protein_coding - - - 300.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6028 - 0.0 PRINCIPAL:1 ENSMUSG00000037318 Traf3ip3 ENSMUST00000043550 ENSMUSP00000040977 TRANSLATION protein_coding - CCDS15634.1 1 513.0 0.0 1.014 0.4 0.0 0.0 -4,-6 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000037318 Traf3ip3 ENSMUST00000160302 ENSMUSP00000142321 TRANSLATION protein_coding start - 2 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0134 3 -2.0 MINOR ENSMUSG00000037318 Traf3ip3 ENSMUST00000162480 ENSMUSP00000141669 TRANSLATION protein_coding start - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.013 2 -2.0 MINOR ENSMUSG00000037318 Traf3ip3 ENSMUST00000159666 ENSMUSP00000141938 TRANSLATION protein_coding start - 3 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0305 - -2.0 MINOR ENSMUSG00000037318 Traf3ip3 ENSMUST00000160332 - NO_TRANSLATION retained_intron ENSMUSG00000037318 Traf3ip3 ENSMUST00000194278 ENSMUSP00000141661 TRANSLATION nonsense_mediated_decay - - 5 185.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0208 2 -2.0 MINOR ENSMUSG00000037318 Traf3ip3 ENSMUST00000161151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037318 Traf3ip3 ENSMUST00000161145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037318 Traf3ip3 ENSMUST00000161367 ENSMUSP00000141358 TRANSLATION protein_coding start/stop - 3 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.013 1 -2.0 MINOR ENSMUSG00000037318 Traf3ip3 ENSMUST00000161403 - NO_TRANSLATION retained_intron ENSMUSG00000037318 Traf3ip3 ENSMUST00000192020 ENSMUSP00000141698 TRANSLATION protein_coding - CCDS15634.1 5 513.0 0.0 1.014 0.4 0.0 0.0 -4,-6 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000037318 Traf3ip3 ENSMUST00000162905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037318 Traf3ip3 ENSMUST00000159805 - NO_TRANSLATION retained_intron ENSMUSG00000099032 Tcf24 ENSMUST00000185184 ENSMUSP00000138827 TRANSLATION protein_coding - CCDS69862.1 5 166.0 0.0 0.8 5.1 46.9 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000099032 Tcf24 ENSMUST00000097824 ENSMUSP00000095435 TRANSLATION protein_coding - - - 66.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 - 0.0 MINOR ENSMUSG00000045336 Hsfy2 ENSMUST00000062085 ENSMUSP00000049715 TRANSLATION protein_coding - CCDS14964.1 - 392.0 0.0 0.4 0.4 74.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025971 Maip1 ENSMUST00000027114 ENSMUSP00000027114 TRANSLATION protein_coding - CCDS48266.1 1 291.0 0.0 1.566 5.9 0.0 0.0 -4,0 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000025971 Maip1 ENSMUST00000185709 - NO_TRANSLATION retained_intron ENSMUSG00000114694 Gm47995 ENSMUST00000225273 ENSMUSP00000153498 TRANSLATION protein_coding - - - 300.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6028 - 0.0 PRINCIPAL:1 ENSMUSG00000004768 Rab23 ENSMUST00000138024 ENSMUSP00000137896 TRANSLATION nonsense_mediated_decay - - 1 64.0 12.0 1.25 0.0 47.3 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000004768 Rab23 ENSMUST00000122822 - NO_TRANSLATION retained_intron ENSMUSG00000004768 Rab23 ENSMUST00000088287 ENSMUSP00000085625 TRANSLATION protein_coding - CCDS35532.1 1 237.0 22.0 4.5 33.9 177.3 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000004768 Rab23 ENSMUST00000132066 - NO_TRANSLATION retained_intron ENSMUSG00000004768 Rab23 ENSMUST00000115174 ENSMUSP00000110828 TRANSLATION protein_coding - CCDS35532.1 1 237.0 22.0 4.5 33.9 177.3 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000004768 Rab23 ENSMUST00000140354 - NO_TRANSLATION retained_intron ENSMUSG00000004768 Rab23 ENSMUST00000150593 - NO_TRANSLATION retained_intron ENSMUSG00000004768 Rab23 ENSMUST00000135330 - NO_TRANSLATION retained_intron ENSMUSG00000004768 Rab23 ENSMUST00000151482 - NO_TRANSLATION retained_intron ENSMUSG00000004768 Rab23 ENSMUST00000195006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025900 Rp1 ENSMUST00000208660 ENSMUSP00000146439 TRANSLATION protein_coding - - 5 1371.0 0.0 4.9975 0.0 488.7 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000025900 Rp1 ENSMUST00000208793 - NO_TRANSLATION retained_intron ENSMUSG00000025900 Rp1 ENSMUST00000027032 ENSMUSP00000027032 TRANSLATION protein_coding - CCDS14804.1 1 2095.0 0.0 0.2 0.0 123.8 0.0 -4,-6 0.1906 - 0.0 MINOR ENSMUSG00000090165 Ugt1a10 ENSMUST00000173325 ENSMUSP00000134443 TRANSLATION protein_coding,RT stop - 3 210.0 19.0 4.75 0.0 337.2 0.0 4,-1 0.0012 - -2.0 MINOR ENSMUSG00000090165 Ugt1a10 ENSMUST00000113142 ENSMUSP00000108767 TRANSLATION protein_coding - CCDS35657.1 1 530.0 19.0 7.5 7.6 757.9 0.0 4,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000090165 Ugt1a10 ENSMUST00000138182 ENSMUSP00000119985 TRANSLATION protein_coding stop - 3 207.0 19.0 4.75 0.0 297.2 0.0 4,-1 0.0012 - -2.0 MINOR ENSMUSG00000062963 Ufc1 ENSMUST00000111302 ENSMUSP00000106933 TRANSLATION protein_coding - CCDS15488.1 1 167.0 0.0 5.0 29.9 285.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000062963 Ufc1 ENSMUST00000138974 - NO_TRANSLATION retained_intron ENSMUSG00000062963 Ufc1 ENSMUST00000080001 ENSMUSP00000078914 TRANSLATION protein_coding - CCDS15488.1 1 167.0 0.0 5.0 29.9 285.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000062963 Ufc1 ENSMUST00000144576 ENSMUSP00000137977 TRANSLATION nonsense_mediated_decay - - 5 93.0 0.0 2.5 0.0 130.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000062963 Ufc1 ENSMUST00000152621 - NO_TRANSLATION retained_intron ENSMUSG00000050840 Cdh20 ENSMUST00000062528 ENSMUSP00000052078 TRANSLATION protein_coding - CCDS15203.1 1 801.0 52.0 9.62 13.9 436.5 0.0 0,-3 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000062527 Or10j27 ENSMUST00000200689 ENSMUSP00000143864 TRANSLATION protein_coding - CCDS15522.1 3 310.0 0.0 1.0 12.5 187.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062527 Or10j27 ENSMUST00000073663 ENSMUSP00000073345 TRANSLATION protein_coding - CCDS15522.1 - 310.0 0.0 1.0 12.5 187.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026563 Tada1 ENSMUST00000132817 ENSMUSP00000122172 TRANSLATION nonsense_mediated_decay - - 2 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026563 Tada1 ENSMUST00000027846 ENSMUSP00000027846 TRANSLATION protein_coding - CCDS15450.1 1 335.0 0.0 0.0 22.2 93.8 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000026563 Tada1 ENSMUST00000138284 - NO_TRANSLATION retained_intron ENSMUSG00000026563 Tada1 ENSMUST00000138148 - NO_TRANSLATION retained_intron ENSMUSG00000026335 Pam ENSMUST00000161071 - NO_TRANSLATION retained_intron ENSMUSG00000026335 Pam ENSMUST00000163007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026335 Pam ENSMUST00000186731 - NO_TRANSLATION retained_intron ENSMUSG00000026335 Pam ENSMUST00000161567 ENSMUSP00000125418 TRANSLATION protein_coding - - 5 873.0 9.0 17.5 0.0 310.3 1.0 4,2 0.1867 17 14.0 ALTERNATIVE:2 ENSMUSG00000026335 Pam ENSMUST00000159131 - NO_TRANSLATION retained_intron ENSMUSG00000026335 Pam ENSMUST00000162681 ENSMUSP00000125133 TRANSLATION protein_coding start - 3 189.0 1.0 2.75 0.0 24.5 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000026335 Pam ENSMUST00000159041 ENSMUSP00000124284 TRANSLATION protein_coding start - 3 150.0 2.0 4.066 0.0 28.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026335 Pam ENSMUST00000159585 - NO_TRANSLATION retained_intron ENSMUSG00000026335 Pam ENSMUST00000162426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026335 Pam ENSMUST00000162803 - NO_TRANSLATION retained_intron ENSMUSG00000026335 Pam ENSMUST00000097625 ENSMUSP00000095228 TRANSLATION protein_coding - CCDS48331.1 5 978.0 9.0 17.5 2.0 310.3 1.0 4,2 1.0 16 14.5 ALTERNATIVE:2 ENSMUSG00000026335 Pam ENSMUST00000058762 ENSMUSP00000057112 TRANSLATION protein_coding - - 1 979.0 9.0 17.5 3.0 310.3 1.0 4,2 0.8933 17 15.0 PRINCIPAL:3 ENSMUSG00000026335 Pam ENSMUST00000159428 - NO_TRANSLATION retained_intron ENSMUSG00000026335 Pam ENSMUST00000160210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026335 Pam ENSMUST00000159841 ENSMUSP00000124479 TRANSLATION protein_coding start - 5 169.0 0.0 1.5 0.0 44.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025964 Adam23 ENSMUST00000146403 - NO_TRANSLATION retained_intron ENSMUSG00000025964 Adam23 ENSMUST00000187844 - NO_TRANSLATION retained_intron ENSMUSG00000025964 Adam23 ENSMUST00000134704 - NO_TRANSLATION retained_intron ENSMUSG00000025964 Adam23 ENSMUST00000114103 ENSMUSP00000139862 TRANSLATION protein_coding - - 5 829.0 14.0 11.73 3.2 472.2 0.0 -3,0 0.713 17 14.746 MINOR ENSMUSG00000025964 Adam23 ENSMUST00000087374 ENSMUSP00000084633 TRANSLATION protein_coding - CCDS14999.1 1 829.0 14.0 11.73 6.9 472.2 1.0 -3,0 1.0 18 16.0 PRINCIPAL:4 ENSMUSG00000025964 Adam23 ENSMUST00000114107 ENSMUSP00000109742 TRANSLATION protein_coding - - 5 829.0 14.0 11.73 6.9 472.2 1.0 -3,0 0.8569 18 16.0 ALTERNATIVE:1 ENSMUSG00000025964 Adam23 ENSMUST00000182642 - NO_TRANSLATION retained_intron ENSMUSG00000025964 Adam23 ENSMUST00000185616 - NO_TRANSLATION retained_intron ENSMUSG00000025964 Adam23 ENSMUST00000097717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025964 Adam23 ENSMUST00000141545 - NO_TRANSLATION retained_intron ENSMUSG00000025964 Adam23 ENSMUST00000190658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025964 Adam23 ENSMUST00000114101 - NO_TRANSLATION retained_intron ENSMUSG00000015355 Cd48 ENSMUST00000015499 ENSMUSP00000015499 TRANSLATION protein_coding - - 1 151.0 0.0 1.15 0.0 38.6 0.0 3,-2 0.0 2 6.528 MINOR ENSMUSG00000015355 Cd48 ENSMUST00000068584 ENSMUSP00000064241 TRANSLATION protein_coding - CCDS15501.1 1 240.0 0.0 2.15 0.1 69.8 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000026608 Kctd3 ENSMUST00000195745 - NO_TRANSLATION retained_intron ENSMUSG00000026608 Kctd3 ENSMUST00000193273 - NO_TRANSLATION retained_intron ENSMUSG00000026608 Kctd3 ENSMUST00000195787 - NO_TRANSLATION retained_intron ENSMUSG00000026608 Kctd3 ENSMUST00000193590 - NO_TRANSLATION retained_intron ENSMUSG00000026608 Kctd3 ENSMUST00000192458 ENSMUSP00000156175 TRANSLATION protein_coding start - 3 127.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000026608 Kctd3 ENSMUST00000085678 ENSMUSP00000082821 TRANSLATION protein_coding - CCDS15608.1 1 815.0 0.0 3.15 7.9 79.1 0.0 -4,-7 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000026608 Kctd3 ENSMUST00000195488 - NO_TRANSLATION retained_intron ENSMUSG00000026608 Kctd3 ENSMUST00000192200 - NO_TRANSLATION retained_intron ENSMUSG00000026608 Kctd3 ENSMUST00000195658 ENSMUSP00000141863 TRANSLATION protein_coding start/stop - 3 242.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 3 -2.0 MINOR ENSMUSG00000026608 Kctd3 ENSMUST00000193143 ENSMUSP00000141861 TRANSLATION nonsense_mediated_decay - - 5 522.0 0.0 3.15 0.0 79.1 0.0 -4,-7 0.034 5 -2.0 MINOR ENSMUSG00000058904 Or9s23 ENSMUST00000214239 ENSMUSP00000150792 TRANSLATION protein_coding - CCDS15171.1 5 323.0 0.0 1.0 0.4 170.0 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058904 Or9s23 ENSMUST00000074859 ENSMUSP00000074402 TRANSLATION protein_coding - CCDS15171.1 - 323.0 0.0 1.0 0.4 170.0 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000006299 Aamp ENSMUST00000186833 - NO_TRANSLATION retained_intron ENSMUSG00000006299 Aamp ENSMUST00000191258 - NO_TRANSLATION retained_intron ENSMUSG00000006299 Aamp ENSMUST00000187046 ENSMUSP00000139411 TRANSLATION protein_coding start/stop - 5 174.0 0.0 2.98 0.0 37.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000006299 Aamp ENSMUST00000190008 ENSMUSP00000140427 TRANSLATION protein_coding stop - 5 92.0 0.0 0.7 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000006299 Aamp ENSMUST00000178235 ENSMUSP00000136644 TRANSLATION protein_coding - CCDS56631.1 5 436.0 0.0 7.019 12.5 104.1 0.0 -4,-5 0.9973 9 10.85 ALTERNATIVE:1 ENSMUSG00000006299 Aamp ENSMUST00000006462 ENSMUSP00000006462 TRANSLATION protein_coding - CCDS15043.1 1 435.0 0.0 7.094 12.5 104.1 0.0 -4,-5 1.0 9 11.0 PRINCIPAL:4 ENSMUSG00000073643 Wdfy1 ENSMUST00000113514 ENSMUSP00000109142 TRANSLATION protein_coding - - 1 410.0 0.0 10.58 34.4 131.8 0.0 -4,-7 0.8687 16 14.998 PRINCIPAL:1 ENSMUSG00000073643 Wdfy1 ENSMUST00000125641 ENSMUSP00000118431 TRANSLATION protein_coding stop - 5 75.0 0.0 2.08 0.0 16.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000073643 Wdfy1 ENSMUST00000113513 ENSMUSP00000109141 TRANSLATION protein_coding - - 5 410.0 0.0 11.08 34.4 131.8 0.0 -4,-7 0.8814 16 16.0 PRINCIPAL:1 ENSMUSG00000073643 Wdfy1 ENSMUST00000113510 ENSMUSP00000109138 TRANSLATION protein_coding - - 1 187.0 0.0 4.73 0.0 29.3 0.0 -4,-7 0.0 3 0.0 MINOR ENSMUSG00000073643 Wdfy1 ENSMUST00000187005 ENSMUSP00000139961 TRANSLATION nonsense_mediated_decay - - 5 110.0 0.0 2.58 0.0 16.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000073643 Wdfy1 ENSMUST00000138319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073643 Wdfy1 ENSMUST00000113515 ENSMUSP00000109143 TRANSLATION protein_coding - - 1 410.0 0.0 11.08 34.4 131.8 0.0 -4,-7 0.8814 16 16.0 PRINCIPAL:1 ENSMUSG00000073643 Wdfy1 ENSMUST00000186464 - NO_TRANSLATION retained_intron ENSMUSG00000073643 Wdfy1 ENSMUST00000113512 ENSMUSP00000109140 TRANSLATION protein_coding - CCDS48296.1 1 410.0 0.0 10.83 34.4 131.8 0.0 -4,-7 1.0 16 15.502 PRINCIPAL:1 ENSMUSG00000073643 Wdfy1 ENSMUST00000143368 ENSMUSP00000123303 TRANSLATION protein_coding stop - 3 182.0 0.0 4.83 0.0 29.3 0.0 -4,-7 0.0004 3 -2.0 MINOR ENSMUSG00000073643 Wdfy1 ENSMUST00000130714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073643 Wdfy1 ENSMUST00000127771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073643 Wdfy1 ENSMUST00000048820 ENSMUSP00000040224 TRANSLATION protein_coding - CCDS15090.1 1 187.0 0.0 4.23 0.0 29.3 0.0 -4,-7 0.0068 3 0.0 MINOR ENSMUSG00000073643 Wdfy1 ENSMUST00000113511 ENSMUSP00000109139 TRANSLATION protein_coding - - 5 187.0 0.0 4.73 0.0 29.3 0.0 -4,-7 0.0 3 0.0 MINOR ENSMUSG00000026034 Clk1 ENSMUST00000129577 - NO_TRANSLATION retained_intron ENSMUSG00000026034 Clk1 ENSMUST00000129303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026034 Clk1 ENSMUST00000148330 ENSMUSP00000137649 TRANSLATION nonsense_mediated_decay - - 1 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026034 Clk1 ENSMUST00000135380 - NO_TRANSLATION retained_intron ENSMUSG00000026034 Clk1 ENSMUST00000156931 - NO_TRANSLATION retained_intron ENSMUSG00000026034 Clk1 ENSMUST00000123580 - NO_TRANSLATION retained_intron ENSMUSG00000026034 Clk1 ENSMUST00000139787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026034 Clk1 ENSMUST00000131051 - NO_TRANSLATION retained_intron ENSMUSG00000026034 Clk1 ENSMUST00000186552 - NO_TRANSLATION retained_intron ENSMUSG00000026034 Clk1 ENSMUST00000147258 - NO_TRANSLATION retained_intron ENSMUSG00000026034 Clk1 ENSMUST00000141570 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026034 Clk1 ENSMUST00000034868 ENSMUSP00000034868 TRANSLATION protein_coding - CCDS35577.1 1 483.0 19.0 9.33 17.5 181.1 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000026034 Clk1 ENSMUST00000151338 ENSMUSP00000137815 TRANSLATION nonsense_mediated_decay - - 5 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006576 Slc4a3 ENSMUST00000150142 ENSMUSP00000120078 TRANSLATION protein_coding stop - 2 104.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000006576 Slc4a3 ENSMUST00000142257 - NO_TRANSLATION retained_intron ENSMUSG00000006576 Slc4a3 ENSMUST00000129703 - NO_TRANSLATION retained_intron ENSMUSG00000006576 Slc4a3 ENSMUST00000145516 - NO_TRANSLATION retained_intron ENSMUSG00000006576 Slc4a3 ENSMUST00000154101 ENSMUSP00000116488 TRANSLATION protein_coding stop - 5 227.0 0.0 2.15 0.0 107.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006576 Slc4a3 ENSMUST00000027415 ENSMUSP00000027415 TRANSLATION nonsense_mediated_decay - - 5 573.0 0.0 2.576 0.0 131.7 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000006576 Slc4a3 ENSMUST00000132110 ENSMUSP00000119942 TRANSLATION nonsense_mediated_decay start - 5 81.0 0.0 0.766 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006576 Slc4a3 ENSMUST00000189794 - NO_TRANSLATION retained_intron ENSMUSG00000006576 Slc4a3 ENSMUST00000138814 ENSMUSP00000122749 TRANSLATION protein_coding stop - 5 95.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000006576 Slc4a3 ENSMUST00000132612 - NO_TRANSLATION retained_intron ENSMUSG00000006576 Slc4a3 ENSMUST00000124341 ENSMUSP00000116747 TRANSLATION protein_coding - CCDS15080.1 1 1227.0 0.0 12.146 6.5 1005.0 0.0 -4,-6 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000006576 Slc4a3 ENSMUST00000145258 ENSMUSP00000119860 TRANSLATION nonsense_mediated_decay start - 5 207.0 0.0 2.576 0.0 132.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057037 Cfhr1 ENSMUST00000161224 ENSMUSP00000142078 TRANSLATION protein_coding start - 5 111.0 0.0 1.8 0.0 64.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057037 Cfhr1 ENSMUST00000023965 ENSMUSP00000023965 TRANSLATION protein_coding - CCDS15337.1 1 343.0 0.0 5.6 0.0 137.6 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000113267 Gm47969 ENSMUST00000222567 ENSMUSP00000152431 TRANSLATION protein_coding - - - 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000026207 Speg ENSMUST00000146705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026207 Speg ENSMUST00000132228 ENSMUSP00000121825 TRANSLATION nonsense_mediated_decay start - 2 132.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026207 Speg ENSMUST00000113588 ENSMUSP00000109218 TRANSLATION protein_coding - CCDS48293.1 5 113.0 0.0 2.45 2.1 76.2 0.0 -4,-5 0.2857 5 1.0 MINOR ENSMUSG00000026207 Speg ENSMUST00000125306 ENSMUSP00000119969 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0005 - -2.0 MINOR ENSMUSG00000026207 Speg ENSMUST00000132222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026207 Speg ENSMUST00000137868 ENSMUSP00000141009 TRANSLATION protein_coding start - 1 3010.0 6.0 14.564 0.0 929.4 0.0 -4,-7 0.3785 50 -2.0 MINOR ENSMUSG00000026207 Speg ENSMUST00000125118 - NO_TRANSLATION retained_intron ENSMUSG00000026207 Speg ENSMUST00000113590 ENSMUSP00000109220 TRANSLATION protein_coding - CCDS48292.1 1 861.0 0.0 4.17 2.1 269.0 0.0 -4,-1 0.3187 12 1.0 MINOR ENSMUSG00000026207 Speg ENSMUST00000113587 ENSMUSP00000109217 TRANSLATION protein_coding - CCDS48293.1 5 113.0 0.0 2.45 2.1 76.2 0.0 -4,-5 0.2857 5 1.0 MINOR ENSMUSG00000026207 Speg ENSMUST00000113589 ENSMUSP00000109219 TRANSLATION protein_coding - CCDS48293.1 2 113.0 0.0 2.45 2.1 76.2 0.0 -4,-5 0.2857 5 1.0 MINOR ENSMUSG00000026207 Speg ENSMUST00000148515 ENSMUSP00000116953 TRANSLATION protein_coding stop - 5 301.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.004 1 -2.0 MINOR ENSMUSG00000026207 Speg ENSMUST00000143679 - NO_TRANSLATION retained_intron ENSMUSG00000026207 Speg ENSMUST00000187214 - NO_TRANSLATION retained_intron ENSMUSG00000026207 Speg ENSMUST00000122266 ENSMUSP00000113646 TRANSLATION protein_coding - CCDS48293.1 1 113.0 0.0 2.45 2.1 76.2 0.0 -4,-5 0.2857 5 1.0 MINOR ENSMUSG00000026207 Speg ENSMUST00000087122 ENSMUSP00000084361 TRANSLATION protein_coding - CCDS35626.1 1 3262.0 6.0 14.564 0.1 978.3 0.0 -4,-5 1.0 56 18.0 PRINCIPAL:1 ENSMUSG00000041872 Il17f ENSMUST00000039046 ENSMUSP00000046960 TRANSLATION protein_coding - CCDS35522.1 1 161.0 0.0 1.5 4.5 101.3 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000041872 Il17f ENSMUST00000191111 - NO_TRANSLATION retained_intron ENSMUSG00000041872 Il17f ENSMUST00000190692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041872 Il17f ENSMUST00000189301 ENSMUSP00000140122 TRANSLATION protein_coding stop - 3 156.0 0.0 1.5 0.0 101.3 0.0 4,-1 0.1383 - -2.0 MINOR ENSMUSG00000086277 4930558K02Rik ENSMUST00000141397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086277 4930558K02Rik ENSMUST00000162676 ENSMUSP00000124751 TRANSLATION protein_coding - CCDS56649.1 3 182.0 0.0 0.8 3.5 269.7 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056708 Ier5 ENSMUST00000055322 ENSMUSP00000056948 TRANSLATION protein_coding - CCDS15382.1 - 308.0 0.0 0.2 0.4 251.6 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000026156 B3gat2 ENSMUST00000144602 ENSMUSP00000115870 TRANSLATION protein_coding - - 1 104.0 7.0 1.0 0.0 54.6 0.0 -4,-2 0.0 - 0.498 MINOR ENSMUSG00000026156 B3gat2 ENSMUST00000063663 ENSMUSP00000066582 TRANSLATION protein_coding - CCDS14850.1 1 324.0 19.0 3.75 0.0 237.0 0.0 -1,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000026156 B3gat2 ENSMUST00000140583 ENSMUSP00000117089 TRANSLATION protein_coding - - 1 302.0 17.0 2.0 0.0 169.5 0.0 -1,-5 0.0027 - 9.12 MINOR ENSMUSG00000041809 Efhc1 ENSMUST00000038447 ENSMUSP00000042343 TRANSLATION protein_coding - CCDS48227.1 1 648.0 4.0 1.28 6.7 331.1 0.0 -4,-6 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000041809 Efhc1 ENSMUST00000160782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000085079 Khdc1b ENSMUST00000147615 ENSMUSP00000120275 TRANSLATION protein_coding - CCDS48229.1 1 126.0 0.0 3.0 0.0 84.0 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033227 Wnt6 ENSMUST00000006716 ENSMUSP00000006716 TRANSLATION protein_coding - CCDS15056.1 1 364.0 0.0 1.56 6.6 385.5 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000033227 Wnt6 ENSMUST00000189544 - NO_TRANSLATION retained_intron ENSMUSG00000038599 Capn8 ENSMUST00000192671 ENSMUSP00000141275 TRANSLATION nonsense_mediated_decay - - 1 690.0 26.0 13.3375 0.0 607.4 0.0 -4,-2 0.1212 - -2.0 MINOR ENSMUSG00000038599 Capn8 ENSMUST00000193260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038599 Capn8 ENSMUST00000048941 ENSMUSP00000047164 TRANSLATION protein_coding - CCDS35814.1 1 703.0 29.0 14.8815 26.8 607.4 0.0 -4,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000038599 Capn8 ENSMUST00000168514 ENSMUSP00000129549 TRANSLATION protein_coding - CCDS48477.1 1 381.0 10.0 8.0 2.4 434.7 0.0 -4,-2 0.0356 - 0.216 MINOR ENSMUSG00000040836 Gpr161 ENSMUST00000178700 ENSMUSP00000136621 TRANSLATION protein_coding - CCDS83621.1 1 545.0 0.0 0.9 2.1 155.7 7.0 -4,-7 0.6024 1 12.408 MINOR ENSMUSG00000040836 Gpr161 ENSMUST00000111450 ENSMUSP00000107077 TRANSLATION protein_coding - CCDS78732.1 1 528.0 0.0 0.7 9.1 155.7 7.0 -4,-7 1.0 1 13.668 PRINCIPAL:1 ENSMUSG00000110100 Gm45261 ENSMUST00000211023 ENSMUSP00000148020 TRANSLATION protein_coding - - 5 197.0 0.0 0.0 0.3 0.0 0.0 -4,-6 0.5735 - 0.0 PRINCIPAL:1 ENSMUSG00000026368 F13b ENSMUST00000141842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026368 F13b ENSMUST00000027615 ENSMUSP00000027615 TRANSLATION protein_coding - CCDS48386.1 1 669.0 0.0 6.32 0.0 282.2 0.0 4,-1 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000057363 Uxs1 ENSMUST00000134860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057363 Uxs1 ENSMUST00000128261 ENSMUSP00000116719 TRANSLATION protein_coding stop - 5 127.0 3.0 0.52 0.0 113.9 0.0 0,2 0.0019 - -2.0 MINOR ENSMUSG00000057363 Uxs1 ENSMUST00000136179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057363 Uxs1 ENSMUST00000126008 ENSMUSP00000119939 TRANSLATION protein_coding - CCDS35551.1 1 420.0 54.0 11.27 20.8 317.9 0.0 0,1 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000057363 Uxs1 ENSMUST00000153317 ENSMUSP00000144114 TRANSLATION protein_coding stop - 3 110.0 20.0 2.75 0.0 65.0 0.0 -2,0 0.0 1 -2.0 MINOR ENSMUSG00000057363 Uxs1 ENSMUST00000139451 ENSMUSP00000118468 TRANSLATION protein_coding stop - 5 254.0 39.0 6.27 0.0 233.5 0.0 0,2 0.002 3 -2.0 MINOR ENSMUSG00000057363 Uxs1 ENSMUST00000076997 ENSMUSP00000076259 TRANSLATION nonsense_mediated_decay - - 1 108.0 3.0 1.52 0.0 129.8 0.0 0,1 0.0008 - -2.0 MINOR ENSMUSG00000057363 Uxs1 ENSMUST00000136704 ENSMUSP00000121869 TRANSLATION nonsense_mediated_decay - - 5 40.0 3.0 0.25 0.0 31.3 0.0 -1,1 0.0 - -2.0 MINOR ENSMUSG00000026182 Tnp1 ENSMUST00000027374 ENSMUSP00000027374 TRANSLATION protein_coding - CCDS35611.1 1 55.0 0.0 0.0 9.7 102.8 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000070870 Cryge ENSMUST00000161960 ENSMUSP00000124711 TRANSLATION protein_coding - - 1 156.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 - 0.0 MINOR ENSMUSG00000070870 Cryge ENSMUST00000087359 ENSMUSP00000084617 TRANSLATION protein_coding - CCDS35598.1 1 174.0 3.0 3.0 23.7 212.8 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000113973 A030014E15Rik ENSMUST00000223400 ENSMUSP00000152588 TRANSLATION protein_coding - - - 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000026567 Adcy10 ENSMUST00000155216 ENSMUSP00000137744 TRANSLATION nonsense_mediated_decay - - 5 98.0 2.0 2.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026567 Adcy10 ENSMUST00000148550 ENSMUSP00000137959 TRANSLATION nonsense_mediated_decay - - 1 471.0 7.0 10.0 0.0 92.0 0.0 -4,-7 0.092 - -2.0 MINOR ENSMUSG00000026567 Adcy10 ENSMUST00000195194 - NO_TRANSLATION retained_intron ENSMUSG00000026567 Adcy10 ENSMUST00000027852 ENSMUSP00000027852 TRANSLATION protein_coding - CCDS35756.1 1 1614.0 20.0 10.0 0.0 92.0 0.0 -4,-7 0.5301 1 18.0 MINOR ENSMUSG00000026567 Adcy10 ENSMUST00000124037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026567 Adcy10 ENSMUST00000194554 - NO_TRANSLATION retained_intron ENSMUSG00000026567 Adcy10 ENSMUST00000194745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026567 Adcy10 ENSMUST00000193149 ENSMUSP00000141999 TRANSLATION protein_coding start - 5 169.0 4.0 3.5 0.0 41.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026567 Adcy10 ENSMUST00000111440 ENSMUSP00000107067 TRANSLATION protein_coding - - 5 1609.0 20.0 10.0 7.3 92.0 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000026567 Adcy10 ENSMUST00000111439 ENSMUSP00000107066 TRANSLATION protein_coding - - 5 1609.0 20.0 10.0 7.3 92.0 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000026542 Apcs ENSMUST00000027824 ENSMUSP00000027824 TRANSLATION protein_coding - CCDS15520.1 1 224.0 0.0 1.0 7.5 321.4 0.0 3,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000016179 Camk1g ENSMUST00000016323 ENSMUSP00000016323 TRANSLATION protein_coding - CCDS15638.1 1 477.0 18.0 8.55 10.1 267.3 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000016179 Camk1g ENSMUST00000165718 - NO_TRANSLATION retained_intron ENSMUSG00000016179 Camk1g ENSMUST00000169907 ENSMUSP00000128143 TRANSLATION protein_coding - - 5 359.0 18.0 8.55 0.0 267.3 0.0 -4,-5 0.0473 3 18.0 MINOR ENSMUSG00000016179 Camk1g ENSMUST00000163202 ENSMUSP00000131451 TRANSLATION protein_coding start/stop - 3 252.0 10.0 6.0 0.0 213.9 0.0 -4,-5 0.0001 2 -2.0 MINOR ENSMUSG00000046856 Cmklr2 ENSMUST00000187533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046856 Cmklr2 ENSMUST00000050536 ENSMUSP00000051417 TRANSLATION protein_coding - CCDS14998.1 1 353.0 0.0 1.0 3.1 134.1 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000004880 Lbr ENSMUST00000194302 - NO_TRANSLATION retained_intron ENSMUSG00000004880 Lbr ENSMUST00000195299 ENSMUSP00000142167 TRANSLATION protein_coding stop - 2 72.0 0.0 1.7 0.0 111.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000004880 Lbr ENSMUST00000005003 ENSMUSP00000005003 TRANSLATION protein_coding - CCDS15584.1 1 626.0 0.0 10.61 2.6 636.1 9.0 -4,-6 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000004880 Lbr ENSMUST00000193030 ENSMUSP00000141335 TRANSLATION protein_coding stop - 3 132.0 0.0 1.7 0.0 111.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000004880 Lbr ENSMUST00000192075 - NO_TRANSLATION retained_intron ENSMUSG00000004880 Lbr ENSMUST00000191878 ENSMUSP00000142133 TRANSLATION protein_coding stop - 5 122.0 0.0 1.7 0.0 111.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000004880 Lbr ENSMUST00000194415 ENSMUSP00000142232 TRANSLATION protein_coding start/stop - 3 202.0 0.0 4.5 0.0 162.2 6.0 -4,-5 0.0025 3 -2.0 MINOR ENSMUSG00000004880 Lbr ENSMUST00000193028 ENSMUSP00000141671 TRANSLATION protein_coding stop - 5 27.0 0.0 0.75 0.0 52.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042474 Fcmr ENSMUST00000149355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042474 Fcmr ENSMUST00000126821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042474 Fcmr ENSMUST00000145446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042474 Fcmr ENSMUST00000038829 ENSMUSP00000048303 TRANSLATION protein_coding - CCDS15261.1 1 422.0 0.0 0.48 0.1 38.9 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000113846 Gm6217 ENSMUST00000222182 ENSMUSP00000152518 TRANSLATION protein_coding - - - 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000101315 Krtap28-13 ENSMUST00000188005 ENSMUSP00000140288 TRANSLATION protein_coding - CCDS78637.1 - 138.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8666 - 0.0 PRINCIPAL:1 ENSMUSG00000026632 Tatdn3 ENSMUST00000027945 ENSMUSP00000027945 TRANSLATION protein_coding - - 3 293.0 7.0 7.33 0.0 186.2 0.0 -4,-5 0.238 2 14.0 ALTERNATIVE:2 ENSMUSG00000026632 Tatdn3 ENSMUST00000156341 - NO_TRANSLATION retained_intron ENSMUSG00000026632 Tatdn3 ENSMUST00000085633 ENSMUSP00000082773 TRANSLATION protein_coding - CCDS48484.1 1 189.0 5.0 4.58 0.7 103.3 0.0 -4,-5 0.0005 1 4.782 MINOR ENSMUSG00000026632 Tatdn3 ENSMUST00000110891 ENSMUSP00000106516 TRANSLATION protein_coding - CCDS48486.1 1 232.0 7.0 6.528 0.0 150.8 0.0 -4,-5 0.0047 2 10.398 MINOR ENSMUSG00000026632 Tatdn3 ENSMUST00000110893 ENSMUSP00000106518 TRANSLATION protein_coding - CCDS48485.1 1 294.0 7.0 7.33 0.0 186.6 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:2 ENSMUSG00000026632 Tatdn3 ENSMUST00000143876 - NO_TRANSLATION retained_intron ENSMUSG00000026632 Tatdn3 ENSMUST00000124497 - NO_TRANSLATION retained_intron ENSMUSG00000026632 Tatdn3 ENSMUST00000153757 - NO_TRANSLATION retained_intron ENSMUSG00000026632 Tatdn3 ENSMUST00000156527 - NO_TRANSLATION retained_intron ENSMUSG00000026641 Usf1 ENSMUST00000160486 ENSMUSP00000125363 TRANSLATION protein_coding - - 2 296.0 0.0 1.95 0.0 64.3 0.0 -4,-5 0.0155 3 10.68 MINOR ENSMUSG00000026641 Usf1 ENSMUST00000160335 - NO_TRANSLATION retained_intron ENSMUSG00000026641 Usf1 ENSMUST00000159371 - NO_TRANSLATION retained_intron ENSMUSG00000026641 Usf1 ENSMUST00000161241 ENSMUSP00000125729 TRANSLATION protein_coding - CCDS15495.1 1 310.0 0.0 2.5 20.9 64.3 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026641 Usf1 ENSMUST00000167546 ENSMUSP00000128913 TRANSLATION protein_coding - CCDS15495.1 5 310.0 0.0 2.5 20.9 64.3 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026641 Usf1 ENSMUST00000159207 ENSMUSP00000124000 TRANSLATION protein_coding stop - 2 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026641 Usf1 ENSMUST00000161297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026641 Usf1 ENSMUST00000159929 - NO_TRANSLATION retained_intron ENSMUSG00000026641 Usf1 ENSMUST00000159466 - NO_TRANSLATION retained_intron ENSMUSG00000026641 Usf1 ENSMUST00000001284 ENSMUSP00000001284 TRANSLATION nonsense_mediated_decay - - 5 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026482 Rgl1 ENSMUST00000188395 - NO_TRANSLATION retained_intron ENSMUSG00000026482 Rgl1 ENSMUST00000149536 ENSMUSP00000141028 TRANSLATION nonsense_mediated_decay - - 3 53.0 0.0 0.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026482 Rgl1 ENSMUST00000111859 ENSMUSP00000107490 TRANSLATION protein_coding - - 5 803.0 0.0 7.18 10.9 318.0 0.0 -4,-5 0.7162 9 14.4 MINOR ENSMUSG00000026482 Rgl1 ENSMUST00000027760 ENSMUSP00000027760 TRANSLATION protein_coding - CCDS15365.1 1 768.0 0.0 7.18 17.5 318.0 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000026482 Rgl1 ENSMUST00000111857 ENSMUSP00000107488 TRANSLATION protein_coding - - 5 766.0 0.0 7.1 6.0 318.0 0.0 -4,-5 0.4661 8 13.05 MINOR ENSMUSG00000026482 Rgl1 ENSMUST00000128251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037461 Ints7 ENSMUST00000193569 ENSMUSP00000142177 TRANSLATION nonsense_mediated_decay - - 2 42.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0109 - -2.0 MINOR ENSMUSG00000037461 Ints7 ENSMUST00000192681 - NO_TRANSLATION retained_intron ENSMUSG00000037461 Ints7 ENSMUST00000194877 ENSMUSP00000141741 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0109 - -2.0 MINOR ENSMUSG00000037461 Ints7 ENSMUST00000193961 - NO_TRANSLATION retained_intron ENSMUSG00000037461 Ints7 ENSMUST00000194785 ENSMUSP00000141817 TRANSLATION nonsense_mediated_decay - - 1 60.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0072 - -2.0 MINOR ENSMUSG00000037461 Ints7 ENSMUST00000045450 ENSMUSP00000036277 TRANSLATION protein_coding - CCDS35825.1 1 966.0 0.0 18.13 19.6 0.0 0.0 -4,-5 1.0 22 10.0 PRINCIPAL:1 ENSMUSG00000042708 Shcbp1l ENSMUST00000136614 ENSMUSP00000137625 TRANSLATION nonsense_mediated_decay - - 1 424.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0034 2 -2.0 MINOR ENSMUSG00000042708 Shcbp1l ENSMUST00000042373 ENSMUSP00000036347 TRANSLATION protein_coding - CCDS15372.1 1 639.0 0.0 0.0 0.4 46.3 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000042708 Shcbp1l ENSMUST00000137861 - NO_TRANSLATION retained_intron ENSMUSG00000058076 Sdhc ENSMUST00000081560 ENSMUSP00000080273 TRANSLATION protein_coding - - 3 135.0 16.0 3.124 1.7 66.5 3.0 -4,0 0.0334 3 14.51 MINOR ENSMUSG00000058076 Sdhc ENSMUST00000155798 ENSMUSP00000122062 TRANSLATION protein_coding stop - 5 32.0 0.0 1.08 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000058076 Sdhc ENSMUST00000111336 ENSMUSP00000106968 TRANSLATION protein_coding - CCDS35772.1 1 169.0 16.0 4.204 22.8 87.8 3.0 -4,0 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000044594 Serpinb3a ENSMUST00000027567 ENSMUSP00000027567 TRANSLATION protein_coding - CCDS15214.1 1 387.0 0.0 6.2 8.0 450.3 0.0 -4,-6 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000044594 Serpinb3a ENSMUST00000112717 ENSMUSP00000108337 TRANSLATION protein_coding - CCDS15214.1 1 387.0 0.0 6.2 8.0 450.3 0.0 -4,-6 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000042510 AA986860 ENSMUST00000186185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042510 AA986860 ENSMUST00000190859 - NO_TRANSLATION retained_intron ENSMUSG00000042510 AA986860 ENSMUST00000039323 ENSMUSP00000046172 TRANSLATION protein_coding - CCDS48352.1 1 606.0 0.0 0.0 0.1 772.3 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000113097 Gm47959 ENSMUST00000223439 ENSMUSP00000152237 TRANSLATION protein_coding - - - 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5818 - 0.0 PRINCIPAL:1 ENSMUSG00000067336 Bmpr2 ENSMUST00000190659 - NO_TRANSLATION retained_intron ENSMUSG00000067336 Bmpr2 ENSMUST00000186246 - NO_TRANSLATION retained_intron ENSMUSG00000067336 Bmpr2 ENSMUST00000087435 ENSMUSP00000084701 TRANSLATION protein_coding - CCDS35588.1 1 1038.0 20.0 8.0 10.7 171.9 0.0 3,-2 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000037351 Actr1b ENSMUST00000160043 - NO_TRANSLATION retained_intron ENSMUSG00000037351 Actr1b ENSMUST00000159675 - NO_TRANSLATION retained_intron ENSMUSG00000037351 Actr1b ENSMUST00000043951 ENSMUSP00000047326 TRANSLATION protein_coding - CCDS14887.1 1 376.0 36.0 10.41 36.9 445.1 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000037351 Actr1b ENSMUST00000162662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037351 Actr1b ENSMUST00000159448 ENSMUSP00000124343 TRANSLATION protein_coding stop - 2 149.0 10.0 3.83 0.0 174.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037351 Actr1b ENSMUST00000160084 ENSMUSP00000125472 TRANSLATION protein_coding stop - 5 142.0 8.0 3.5 0.0 166.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037351 Actr1b ENSMUST00000162684 - NO_TRANSLATION retained_intron ENSMUSG00000066800 Rnasel ENSMUST00000182016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066800 Rnasel ENSMUST00000182538 ENSMUSP00000138734 TRANSLATION protein_coding - - 1 227.0 0.0 4.65 0.0 96.7 0.0 -4,-5 0.0 8 3.0 MINOR ENSMUSG00000066800 Rnasel ENSMUST00000086209 ENSMUSP00000083385 TRANSLATION protein_coding - CCDS15377.1 5 735.0 3.0 6.15 1.1 303.2 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000066800 Rnasel ENSMUST00000183241 ENSMUSP00000138752 TRANSLATION protein_coding stop - 1 674.0 3.0 5.15 0.0 262.4 0.0 -4,-5 0.033 17 -2.0 MINOR ENSMUSG00000066800 Rnasel ENSMUST00000182131 - NO_TRANSLATION retained_intron ENSMUSG00000066800 Rnasel ENSMUST00000182722 ENSMUSP00000138247 TRANSLATION protein_coding stop - 1 651.0 3.0 4.5 0.0 236.0 0.0 -4,-5 0.0314 15 -2.0 MINOR ENSMUSG00000026123 Plekhb2 ENSMUST00000156687 ENSMUSP00000140475 TRANSLATION protein_coding - CCDS78558.1 1 204.0 10.0 3.0 0.0 38.2 0.0 -4,-2 0.1296 2 18.0 MINOR ENSMUSG00000026123 Plekhb2 ENSMUST00000152654 ENSMUSP00000116777 TRANSLATION protein_coding stop - 5 65.0 9.0 1.5 0.0 25.3 0.0 -4,-2 0.0003 1 -2.0 MINOR ENSMUSG00000026123 Plekhb2 ENSMUST00000191722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026123 Plekhb2 ENSMUST00000027297 ENSMUSP00000027297 TRANSLATION protein_coding - CCDS14874.1 1 221.0 10.0 3.0 21.4 38.2 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000070643 Sox13 ENSMUST00000153799 ENSMUSP00000119729 TRANSLATION protein_coding - CCDS48363.1 1 613.0 0.0 2.0 8.9 79.3 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000070643 Sox13 ENSMUST00000145922 - NO_TRANSLATION retained_intron ENSMUSG00000070643 Sox13 ENSMUST00000144386 ENSMUSP00000122980 TRANSLATION protein_coding - - 1 504.0 0.0 2.0 0.0 79.3 0.0 -4,-5 0.0268 4 12.0 MINOR ENSMUSG00000070643 Sox13 ENSMUST00000094551 ENSMUSP00000092130 TRANSLATION protein_coding - CCDS48363.1 1 613.0 0.0 2.0 8.9 79.3 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000070643 Sox13 ENSMUST00000126530 - NO_TRANSLATION retained_intron ENSMUSG00000050565 Tor1aip2 ENSMUST00000065648 ENSMUSP00000067353 TRANSLATION protein_coding - CCDS15388.1 1 131.0 6.0 0.0 11.0 0.0 0.0 -4,-5 0.9673 2 9.0 MINOR ENSMUSG00000050565 Tor1aip2 ENSMUST00000111754 ENSMUSP00000107383 TRANSLATION protein_coding - CCDS15388.1 1 131.0 6.0 0.0 11.0 0.0 0.0 -4,-5 0.9673 2 9.0 MINOR ENSMUSG00000050565 Tor1aip2 ENSMUST00000060404 ENSMUSP00000050817 TRANSLATION protein_coding - CCDS15389.1 1 502.0 0.0 1.0 0.0 727.8 1.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000050565 Tor1aip2 ENSMUST00000125371 - NO_TRANSLATION retained_intron ENSMUSG00000050565 Tor1aip2 ENSMUST00000111757 ENSMUSP00000107387 TRANSLATION protein_coding - CCDS15389.1 1 502.0 0.0 1.0 0.0 727.8 1.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000050565 Tor1aip2 ENSMUST00000131359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050565 Tor1aip2 ENSMUST00000128941 ENSMUSP00000135107 TRANSLATION protein_coding - CCDS15388.1 1 131.0 6.0 0.0 11.0 0.0 0.0 -4,-5 0.9673 2 9.0 MINOR ENSMUSG00000050565 Tor1aip2 ENSMUST00000133152 ENSMUSP00000118611 TRANSLATION protein_coding stop - 3 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0105 - -2.0 MINOR ENSMUSG00000050565 Tor1aip2 ENSMUST00000097526 ENSMUSP00000095133 TRANSLATION protein_coding - CCDS15388.1 1 131.0 6.0 0.0 11.0 0.0 0.0 -4,-5 0.9673 2 9.0 MINOR ENSMUSG00000026483 Niban1 ENSMUST00000097541 ENSMUSP00000095148 TRANSLATION nonsense_mediated_decay - - 1 584.0 0.0 7.864 0.0 0.0 0.0 -4,-5 0.0317 18 -2.0 MINOR ENSMUSG00000026483 Niban1 ENSMUST00000134499 ENSMUSP00000115692 TRANSLATION protein_coding stop - 2 114.0 0.0 1.68 0.0 0.0 0.0 -4,-5 0.0009 3 -2.0 MINOR ENSMUSG00000026483 Niban1 ENSMUST00000086267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026483 Niban1 ENSMUST00000111875 ENSMUSP00000107506 TRANSLATION protein_coding - - 1 274.0 0.0 3.344 0.0 0.0 0.0 -4,-5 0.0102 9 0.0 MINOR ENSMUSG00000026483 Niban1 ENSMUST00000148810 ENSMUSP00000115822 TRANSLATION protein_coding - CCDS48393.1 1 926.0 0.0 8.614 0.0 0.0 0.0 -4,-5 1.0 23 6.0 PRINCIPAL:1 ENSMUSG00000037035 Inhbb ENSMUST00000038765 ENSMUSP00000044918 TRANSLATION protein_coding - CCDS15224.1 1 411.0 0.0 1.0 8.9 137.8 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000090175 Ugt1a9 ENSMUST00000073772 ENSMUSP00000073444 TRANSLATION protein_coding - CCDS15138.1 1 528.0 19.0 5.0 4.6 766.0 0.0 3,-2 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000006301 Tmbim1 ENSMUST00000130763 ENSMUSP00000121814 TRANSLATION protein_coding stop - 3 98.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006301 Tmbim1 ENSMUST00000016309 ENSMUSP00000016309 TRANSLATION protein_coding - CCDS15044.1 1 309.0 0.0 6.36 11.0 111.0 7.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000006301 Tmbim1 ENSMUST00000135384 - NO_TRANSLATION retained_intron ENSMUSG00000006301 Tmbim1 ENSMUST00000152603 - NO_TRANSLATION retained_intron ENSMUSG00000006301 Tmbim1 ENSMUST00000113796 ENSMUSP00000109427 TRANSLATION protein_coding - CCDS15044.1 1 309.0 0.0 6.36 11.0 111.0 7.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000006301 Tmbim1 ENSMUST00000128505 ENSMUSP00000122874 TRANSLATION protein_coding start - 3 156.0 0.0 2.79 0.0 44.5 3.0 -3,-5 0.0001 - -2.0 MINOR ENSMUSG00000006301 Tmbim1 ENSMUST00000141560 ENSMUSP00000115444 TRANSLATION protein_coding stop - 3 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006301 Tmbim1 ENSMUST00000154859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026111 Unc50 ENSMUST00000118059 ENSMUSP00000113135 TRANSLATION protein_coding - CCDS14892.1 5 259.0 0.0 5.46 35.7 300.0 9.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026111 Unc50 ENSMUST00000193713 ENSMUSP00000141651 TRANSLATION protein_coding stop - 3 86.0 0.0 0.8 0.0 87.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026111 Unc50 ENSMUST00000134184 - NO_TRANSLATION retained_intron ENSMUSG00000026111 Unc50 ENSMUST00000027285 ENSMUSP00000027285 TRANSLATION protein_coding - CCDS14892.1 1 259.0 0.0 5.46 35.7 300.0 9.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026111 Unc50 ENSMUST00000193979 ENSMUSP00000141818 TRANSLATION protein_coding stop - 3 170.0 0.0 3.13 0.0 204.9 5.0 -4,-2 0.0029 - -2.0 MINOR ENSMUSG00000026111 Unc50 ENSMUST00000114925 ENSMUSP00000110575 TRANSLATION protein_coding - CCDS14892.1 1 259.0 0.0 5.46 35.7 300.0 9.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026111 Unc50 ENSMUST00000144617 ENSMUSP00000123684 TRANSLATION protein_coding stop - 5 214.0 0.0 4.46 2.0 258.3 8.0 -4,-2 0.0534 - -2.0 MINOR ENSMUSG00000052760 A630001G21Rik ENSMUST00000159325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052760 A630001G21Rik ENSMUST00000161453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052760 A630001G21Rik ENSMUST00000159320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052760 A630001G21Rik ENSMUST00000159122 ENSMUSP00000124137 TRANSLATION protein_coding - CCDS48299.1 1 229.0 0.0 2.3 0.0 131.0 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000052760 A630001G21Rik ENSMUST00000064788 ENSMUSP00000070374 TRANSLATION protein_coding - CCDS48299.1 2 229.0 0.0 2.3 0.0 131.0 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000052760 A630001G21Rik ENSMUST00000162038 ENSMUSP00000125643 TRANSLATION nonsense_mediated_decay - - 2 116.0 0.0 2.0 0.0 131.0 0.0 -4,-5 0.0037 3 -2.0 MINOR ENSMUSG00000040485 Lrrc52 ENSMUST00000036643 ENSMUSP00000047213 TRANSLATION protein_coding - CCDS15458.1 1 314.0 0.0 2.0 7.3 76.4 0.0 2,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026500 Cox20 ENSMUST00000027781 ENSMUSP00000027781 TRANSLATION protein_coding - CCDS15556.1 1 117.0 0.0 1.95 16.3 43.9 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026500 Cox20 ENSMUST00000154437 - NO_TRANSLATION retained_intron ENSMUSG00000026616 Cr2 ENSMUST00000195737 - NO_TRANSLATION retained_intron ENSMUSG00000026616 Cr2 ENSMUST00000238929 - NO_TRANSLATION retained_intron ENSMUSG00000026616 Cr2 ENSMUST00000193356 ENSMUSP00000141706 TRANSLATION nonsense_mediated_decay start - 1 735.0 0.0 9.67 0.0 320.5 1.0 -4,-5 0.0052 7 -2.0 MINOR ENSMUSG00000026616 Cr2 ENSMUST00000192604 - NO_TRANSLATION retained_intron ENSMUSG00000026616 Cr2 ENSMUST00000194149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026616 Cr2 ENSMUST00000043104 ENSMUSP00000044261 TRANSLATION protein_coding start - 5 347.0 0.0 5.55 0.0 186.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026616 Cr2 ENSMUST00000195347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026616 Cr2 ENSMUST00000193801 ENSMUSP00000141276 TRANSLATION protein_coding - - 1 50.0 0.0 0.15 0.0 0.0 0.0 2,-3 0.0 - 0.0 MINOR ENSMUSG00000026616 Cr2 ENSMUST00000195120 ENSMUSP00000141538 TRANSLATION protein_coding - - 5 1026.0 0.0 14.02 0.0 473.9 0.0 0,-3 0.0154 9 0.0 MINOR ENSMUSG00000026616 Cr2 ENSMUST00000195722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026616 Cr2 ENSMUST00000193436 ENSMUSP00000142147 TRANSLATION protein_coding start - 5 62.0 0.0 0.315 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026616 Cr2 ENSMUST00000082321 ENSMUSP00000080938 TRANSLATION protein_coding - CCDS15642.1 1 1032.0 0.0 14.32 2.2 473.9 1.0 0,-3 0.2616 10 0.75 MINOR ENSMUSG00000026616 Cr2 ENSMUST00000210219 ENSMUSP00000147804 TRANSLATION protein_coding - - 5 1408.0 0.0 20.62 2.6 687.4 1.0 4,-1 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000045381 Or10aa1 ENSMUST00000214690 ENSMUSP00000149005 TRANSLATION protein_coding - CCDS15535.1 5 314.0 0.0 1.0 9.4 172.3 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045381 Or10aa1 ENSMUST00000052975 ENSMUSP00000056772 TRANSLATION protein_coding - CCDS15535.1 - 314.0 0.0 1.0 9.4 172.3 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026390 Marco ENSMUST00000027639 ENSMUSP00000027639 TRANSLATION protein_coding - CCDS15234.1 1 518.0 5.0 6.975 3.3 133.9 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000026390 Marco ENSMUST00000186432 ENSMUSP00000140948 TRANSLATION protein_coding start/stop - 3 123.0 0.0 1.3 0.0 39.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026028 Trak2 ENSMUST00000173590 ENSMUSP00000134499 TRANSLATION protein_coding stop - 2 52.0 0.0 0.0 0.0 30.4 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026028 Trak2 ENSMUST00000173719 - NO_TRANSLATION retained_intron ENSMUSG00000026028 Trak2 ENSMUST00000174359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026028 Trak2 ENSMUST00000027186 ENSMUSP00000027186 TRANSLATION protein_coding - CCDS14980.1 1 913.0 0.0 0.8 12.5 525.1 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000026028 Trak2 ENSMUST00000172685 - NO_TRANSLATION retained_intron ENSMUSG00000026028 Trak2 ENSMUST00000174120 ENSMUSP00000134253 TRANSLATION protein_coding - - 5 672.0 0.0 0.8 0.0 525.1 0.0 -4,-7 0.0927 1 12.0 MINOR ENSMUSG00000114011 Gm47955 ENSMUST00000223536 ENSMUSP00000152433 TRANSLATION protein_coding - - - 161.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5818 - 0.0 PRINCIPAL:1 ENSMUSG00000040865 Ino80d ENSMUST00000137511 ENSMUSP00000119118 TRANSLATION protein_coding - CCDS48277.1 1 1021.0 4.0 0.0 14.2 125.5 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000040865 Ino80d ENSMUST00000240545 ENSMUSP00000159478 TRANSLATION non_stop_decay stop - - 612.0 0.0 0.0 0.0 63.1 0.0 -4,-7 0.0028 2 -2.0 MINOR ENSMUSG00000040865 Ino80d ENSMUST00000188100 - NO_TRANSLATION retained_intron ENSMUSG00000040865 Ino80d ENSMUST00000133236 ENSMUSP00000123430 TRANSLATION nonsense_mediated_decay - CCDS35594.1 1 916.0 0.0 0.0 6.8 63.1 0.0 -4,-7 0.3788 2 -2.0 MINOR ENSMUSG00000040865 Ino80d ENSMUST00000153992 ENSMUSP00000115332 TRANSLATION protein_coding - CCDS35594.1 1 916.0 0.0 0.0 6.8 63.1 0.0 -4,-7 0.3788 2 4.012 MINOR ENSMUSG00000040865 Ino80d ENSMUST00000097718 ENSMUSP00000095325 TRANSLATION protein_coding - CCDS48277.1 5 1021.0 4.0 0.0 14.2 125.5 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000038473 Nos1ap ENSMUST00000160456 ENSMUSP00000125251 TRANSLATION protein_coding - CCDS48438.1 5 503.0 0.0 2.475 3.9 115.1 0.0 -4,-5 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000038473 Nos1ap ENSMUST00000161221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038473 Nos1ap ENSMUST00000160466 - NO_TRANSLATION retained_intron ENSMUSG00000038473 Nos1ap ENSMUST00000162709 - NO_TRANSLATION retained_intron ENSMUSG00000038473 Nos1ap ENSMUST00000161485 ENSMUSP00000124169 TRANSLATION protein_coding stop - 3 228.0 0.0 1.975 0.0 83.8 0.0 -4,-5 0.0001 7 -2.0 MINOR ENSMUSG00000038473 Nos1ap ENSMUST00000162090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038473 Nos1ap ENSMUST00000161966 - NO_TRANSLATION retained_intron ENSMUSG00000038473 Nos1ap ENSMUST00000159665 - NO_TRANSLATION retained_intron ENSMUSG00000038473 Nos1ap ENSMUST00000160816 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026223 Itm2c ENSMUST00000185569 ENSMUSP00000140692 TRANSLATION protein_coding - - 5 232.0 0.0 0.0 1.0 0.0 1.0 -4,-6 0.0127 6 0.0 MINOR ENSMUSG00000026223 Itm2c ENSMUST00000139837 - NO_TRANSLATION retained_intron ENSMUSG00000026223 Itm2c ENSMUST00000027425 ENSMUSP00000027425 TRANSLATION protein_coding - CCDS35641.1 1 269.0 0.0 0.0 9.3 75.2 1.0 -4,-6 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000038866 Zcchc2 ENSMUST00000118196 ENSMUSP00000113974 TRANSLATION protein_coding - CCDS48335.1 5 1166.0 4.0 0.0 0.1 25.9 0.0 -4,-5 0.5837 6 6.0 ALTERNATIVE:2 ENSMUSG00000038866 Zcchc2 ENSMUST00000119166 ENSMUSP00000113128 TRANSLATION protein_coding - CCDS48336.1 1 1155.0 4.0 0.0 0.0 25.9 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:2 ENSMUSG00000038866 Zcchc2 ENSMUST00000131830 ENSMUSP00000140540 TRANSLATION nonsense_mediated_decay start - 3 79.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0004 - -2.0 MINOR ENSMUSG00000038866 Zcchc2 ENSMUST00000186983 ENSMUSP00000141148 TRANSLATION protein_coding start - 1 758.0 4.0 0.0 0.0 25.9 0.0 -4,-5 0.091 4 -2.0 MINOR ENSMUSG00000038866 Zcchc2 ENSMUST00000188954 ENSMUSP00000139971 TRANSLATION protein_coding start/stop - 3 257.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000049598 Vsig8 ENSMUST00000061835 ENSMUSP00000058008 TRANSLATION protein_coding - CCDS15516.1 1 417.0 0.0 3.28 6.9 87.1 1.0 3,-2 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000049598 Vsig8 ENSMUST00000177086 ENSMUSP00000134997 TRANSLATION protein_coding - - 1 305.0 0.0 2.2 0.0 35.4 1.0 -4,-6 0.0025 6 6.276 MINOR ENSMUSG00000116048 Septin2 ENSMUST00000168776 ENSMUSP00000132850 TRANSLATION protein_coding - CCDS15190.1 5 361.0 16.0 7.5 15.8 424.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000116048 Septin2 ENSMUST00000179353 ENSMUSP00000136366 TRANSLATION protein_coding - CCDS15190.1 5 361.0 16.0 7.5 15.8 424.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000116048 Septin2 ENSMUST00000172165 ENSMUSP00000127276 TRANSLATION protein_coding - - 5 321.0 16.0 6.5 2.0 411.1 0.0 -4,-5 0.0508 - 15.5 MINOR ENSMUSG00000026141 Col19a1 ENSMUST00000115244 ENSMUSP00000110899 TRANSLATION protein_coding - CCDS14854.1 1 1136.0 0.0 13.4735 2.1 197.3 0.0 2,-3 1.0 - 11.998 PRINCIPAL:1 ENSMUSG00000026141 Col19a1 ENSMUST00000144297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026141 Col19a1 ENSMUST00000051344 ENSMUSP00000052606 TRANSLATION protein_coding - - 1 1069.0 0.0 13.9735 0.0 168.2 0.0 2,-3 0.1972 - 10.254 MINOR ENSMUSG00000026697 Myoc ENSMUST00000028020 ENSMUSP00000028020 TRANSLATION protein_coding - CCDS15422.1 1 490.0 0.0 1.5 5.5 284.6 0.0 2,-4 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000067879 Vxn ENSMUST00000088666 ENSMUSP00000086041 TRANSLATION protein_coding - CCDS14813.1 1 207.0 0.0 0.0 9.1 280.3 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000033124 Atg9a ENSMUST00000187785 ENSMUSP00000139828 TRANSLATION protein_coding start/stop - 3 278.0 0.0 3.1 0.0 129.7 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000033124 Atg9a ENSMUST00000239085 ENSMUSP00000159170 TRANSLATION nonsense_mediated_decay - - - 551.0 0.0 4.45 0.0 315.7 3.0 -4,-5 0.0017 7 -2.0 MINOR ENSMUSG00000033124 Atg9a ENSMUST00000186744 ENSMUSP00000140616 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033124 Atg9a ENSMUST00000189702 ENSMUSP00000139641 TRANSLATION protein_coding - CCDS35622.1 5 839.0 0.0 7.05 12.5 436.7 3.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000033124 Atg9a ENSMUST00000040689 ENSMUSP00000047449 TRANSLATION protein_coding - CCDS35622.1 1 839.0 0.0 7.05 12.5 436.7 3.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000033124 Atg9a ENSMUST00000189820 ENSMUSP00000139608 TRANSLATION protein_coding start - 2 847.0 0.0 7.05 0.0 436.7 3.0 -4,-5 0.1519 17 -2.0 MINOR ENSMUSG00000033124 Atg9a ENSMUST00000188430 - NO_TRANSLATION retained_intron ENSMUSG00000033124 Atg9a ENSMUST00000188347 ENSMUSP00000139731 TRANSLATION protein_coding - CCDS35622.1 5 839.0 0.0 7.05 12.5 436.7 3.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000033124 Atg9a ENSMUST00000189665 ENSMUSP00000140012 TRANSLATION nonsense_mediated_decay - - 1 176.0 0.0 2.45 0.0 0.0 1.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033124 Atg9a ENSMUST00000187601 - NO_TRANSLATION retained_intron ENSMUSG00000070871 Ccnyl1 ENSMUST00000114077 ENSMUSP00000109711 TRANSLATION protein_coding - - 1 367.0 0.0 4.0 0.4 58.0 0.0 -4,-7 0.2256 5 8.0 ALTERNATIVE:2 ENSMUSG00000070871 Ccnyl1 ENSMUST00000094898 ENSMUSP00000092499 TRANSLATION protein_coding - CCDS48281.1 5 291.0 0.0 4.0 2.4 58.0 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:2 ENSMUSG00000070871 Ccnyl1 ENSMUST00000187170 ENSMUSP00000139498 TRANSLATION protein_coding - CCDS48281.1 5 291.0 0.0 4.0 2.4 58.0 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:2 ENSMUSG00000070871 Ccnyl1 ENSMUST00000187638 ENSMUSP00000139790 TRANSLATION protein_coding stop - 5 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000049339 Retreg2 ENSMUST00000188977 - NO_TRANSLATION retained_intron ENSMUSG00000049339 Retreg2 ENSMUST00000189345 ENSMUSP00000140909 TRANSLATION protein_coding start/stop - 1 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0155 - -2.0 MINOR ENSMUSG00000049339 Retreg2 ENSMUST00000186037 ENSMUSP00000139890 TRANSLATION protein_coding start - 1 490.0 0.0 2.91 0.0 0.0 8.0 -4,-7 0.1194 4 -2.0 MINOR ENSMUSG00000049339 Retreg2 ENSMUST00000190240 ENSMUSP00000139410 TRANSLATION protein_coding - CCDS78621.1 1 504.0 0.0 2.91 1.0 0.0 10.0 -3,-5 0.375 6 6.0 ALTERNATIVE:2 ENSMUSG00000049339 Retreg2 ENSMUST00000189650 ENSMUSP00000139473 TRANSLATION protein_coding start/stop - 2 149.0 0.0 0.0 0.0 0.0 6.0 -4,-7 0.0544 2 -2.0 MINOR ENSMUSG00000049339 Retreg2 ENSMUST00000187901 ENSMUSP00000140636 TRANSLATION protein_coding stop - 2 84.0 0.0 0.0 0.0 0.0 4.0 -4,-7 0.0464 - -2.0 MINOR ENSMUSG00000049339 Retreg2 ENSMUST00000097694 ENSMUSP00000095300 TRANSLATION protein_coding - CCDS35621.1 1 541.0 0.0 2.91 1.0 0.0 10.0 -3,-5 1.0 6 6.0 PRINCIPAL:2 ENSMUSG00000049339 Retreg2 ENSMUST00000188873 ENSMUSP00000139508 TRANSLATION nonsense_mediated_decay - - 5 173.0 0.0 0.0 0.0 0.0 6.0 -3,-5 0.0437 2 -2.0 MINOR ENSMUSG00000079144 A130010J15Rik ENSMUST00000160822 ENSMUSP00000124546 TRANSLATION protein_coding - CCDS15633.1 2 263.0 0.0 2.255 6.9 243.6 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079144 A130010J15Rik ENSMUST00000192189 ENSMUSP00000142222 TRANSLATION protein_coding stop - 3 28.0 0.0 0.0 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000079144 A130010J15Rik ENSMUST00000110831 ENSMUSP00000106455 TRANSLATION protein_coding - CCDS15633.1 1 263.0 0.0 2.255 6.9 243.6 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079144 A130010J15Rik ENSMUST00000191613 ENSMUSP00000141799 TRANSLATION protein_coding stop - 2 70.0 0.0 1.04 0.0 45.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000079144 A130010J15Rik ENSMUST00000193307 ENSMUSP00000142273 TRANSLATION protein_coding stop - 3 84.0 0.0 1.24 0.0 55.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000079144 A130010J15Rik ENSMUST00000161235 ENSMUSP00000124191 TRANSLATION protein_coding - CCDS15633.1 1 263.0 0.0 2.255 6.9 243.6 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079144 A130010J15Rik ENSMUST00000160077 ENSMUSP00000141934 TRANSLATION protein_coding stop - 3 163.0 0.0 1.29 0.0 105.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000079144 A130010J15Rik ENSMUST00000178744 ENSMUSP00000136653 TRANSLATION protein_coding - CCDS15633.1 2 263.0 0.0 2.255 6.9 243.6 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044429 Cryga ENSMUST00000061497 ENSMUSP00000058548 TRANSLATION protein_coding - CCDS15014.1 1 174.0 4.0 2.0 26.7 212.2 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000044429 Cryga ENSMUST00000154012 - NO_TRANSLATION retained_intron ENSMUSG00000026701 Prdx6 ENSMUST00000051925 ENSMUSP00000050703 TRANSLATION protein_coding - CCDS78724.1 2 200.0 0.0 4.198 0.0 121.0 0.0 -4,-2 0.01 13 9.222 MINOR ENSMUSG00000026701 Prdx6 ENSMUST00000156318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026701 Prdx6 ENSMUST00000071718 ENSMUSP00000071636 TRANSLATION protein_coding - CCDS15415.1 1 224.0 0.0 5.0 31.9 140.6 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000026701 Prdx6 ENSMUST00000155135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026701 Prdx6 ENSMUST00000130867 - NO_TRANSLATION retained_intron ENSMUSG00000026701 Prdx6 ENSMUST00000192639 ENSMUSP00000142093 TRANSLATION nonsense_mediated_decay - - 1 76.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026701 Prdx6 ENSMUST00000139387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026701 Prdx6 ENSMUST00000194613 - NO_TRANSLATION retained_intron ENSMUSG00000026701 Prdx6 ENSMUST00000156678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040848 Sft2d2 ENSMUST00000192185 ENSMUSP00000141801 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 0.6 0.0 0.0 1.0 -4,-5 0.0015 1 -2.0 MINOR ENSMUSG00000040848 Sft2d2 ENSMUST00000043338 ENSMUSP00000043537 TRANSLATION protein_coding - CCDS15440.1 1 159.0 0.0 4.18 36.2 121.4 5.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040848 Sft2d2 ENSMUST00000192565 ENSMUSP00000142241 TRANSLATION nonsense_mediated_decay - - 3 114.0 0.0 1.35 0.0 0.0 2.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000098923 Tmem185b ENSMUST00000183607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000098923 Tmem185b ENSMUST00000183952 ENSMUSP00000139021 TRANSLATION protein_coding - CCDS69932.1 - 350.0 0.0 1.0 31.9 203.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040124 Gorab ENSMUST00000185299 - NO_TRANSLATION retained_intron ENSMUSG00000040124 Gorab ENSMUST00000186402 ENSMUSP00000140320 TRANSLATION nonsense_mediated_decay - - 1 161.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0125 2 -2.0 MINOR ENSMUSG00000040124 Gorab ENSMUST00000045138 ENSMUSP00000036253 TRANSLATION protein_coding - CCDS15429.1 1 368.0 0.0 3.05 3.1 0.0 0.0 -4,-5 1.0 8 7.0 PRINCIPAL:1 ENSMUSG00000050526 Mgat4f ENSMUST00000162187 ENSMUSP00000124251 TRANSLATION protein_coding - CCDS15307.2 2 479.0 0.0 0.68 0.0 255.3 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026077 Npas2 ENSMUST00000173050 ENSMUSP00000134241 TRANSLATION protein_coding stop - 2 60.0 0.0 1.264 0.0 39.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026077 Npas2 ENSMUST00000172825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026077 Npas2 ENSMUST00000056815 ENSMUSP00000054719 TRANSLATION protein_coding - CCDS48244.1 1 816.0 0.0 9.264 0.1 154.8 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000026172 Bcs1l ENSMUST00000113732 ENSMUSP00000109361 TRANSLATION protein_coding - CCDS15051.1 5 418.0 7.0 6.08 32.1 64.6 1.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000026172 Bcs1l ENSMUST00000113733 ENSMUSP00000109362 TRANSLATION protein_coding - CCDS15051.1 1 418.0 7.0 6.08 32.1 64.6 1.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000026172 Bcs1l ENSMUST00000147464 - NO_TRANSLATION retained_intron ENSMUSG00000026172 Bcs1l ENSMUST00000027358 ENSMUSP00000027358 TRANSLATION protein_coding - CCDS15051.1 1 418.0 7.0 6.08 32.1 64.6 1.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000026586 Prrx1 ENSMUST00000183691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026586 Prrx1 ENSMUST00000075805 ENSMUSP00000075203 TRANSLATION protein_coding - CCDS15428.1 1 217.0 0.0 1.5 12.8 80.4 0.0 -4,-5 0.5006 1 11.846 MINOR ENSMUSG00000026586 Prrx1 ENSMUST00000174397 ENSMUSP00000134338 TRANSLATION protein_coding - CCDS56651.1 1 200.0 0.0 1.5 0.0 80.4 0.0 -4,-5 0.1491 1 10.218 MINOR ENSMUSG00000026586 Prrx1 ENSMUST00000174098 - NO_TRANSLATION retained_intron ENSMUSG00000026586 Prrx1 ENSMUST00000027878 ENSMUSP00000027878 TRANSLATION protein_coding - CCDS15427.1 1 245.0 0.0 1.5 30.0 110.1 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026277 Stk25 ENSMUST00000151068 - NO_TRANSLATION retained_intron ENSMUSG00000026277 Stk25 ENSMUST00000186287 ENSMUSP00000140396 TRANSLATION protein_coding stop - 5 106.0 15.0 1.83 0.0 71.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026277 Stk25 ENSMUST00000027498 ENSMUSP00000027498 TRANSLATION protein_coding - CCDS15192.1 1 426.0 21.0 6.58 26.4 236.8 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000026277 Stk25 ENSMUST00000133769 ENSMUSP00000117765 TRANSLATION protein_coding stop - 5 234.0 21.0 4.83 0.0 210.9 0.0 -4,-7 0.0029 2 -2.0 MINOR ENSMUSG00000026277 Stk25 ENSMUST00000154008 - NO_TRANSLATION retained_intron ENSMUSG00000026277 Stk25 ENSMUST00000125778 - NO_TRANSLATION retained_intron ENSMUSG00000090272 Mndal ENSMUST00000191500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090272 Mndal ENSMUST00000186442 ENSMUSP00000140539 TRANSLATION protein_coding - - 5 485.0 0.0 3.2 0.0 298.4 0.0 -4,-5 0.0625 16 8.0 ALTERNATIVE:2 ENSMUSG00000090272 Mndal ENSMUST00000189501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090272 Mndal ENSMUST00000190651 ENSMUSP00000140191 TRANSLATION protein_coding stop - 5 184.0 0.0 1.0 0.0 53.3 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000090272 Mndal ENSMUST00000220623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090272 Mndal ENSMUST00000189474 - NO_TRANSLATION retained_intron ENSMUSG00000090272 Mndal ENSMUST00000187636 - NO_TRANSLATION retained_intron ENSMUSG00000090272 Mndal ENSMUST00000188804 ENSMUSP00000140610 TRANSLATION protein_coding - CCDS48452.1 1 538.0 0.0 3.2 0.0 298.4 0.0 -4,-5 1.0 16 8.0 PRINCIPAL:2 ENSMUSG00000090272 Mndal ENSMUST00000190071 ENSMUSP00000141055 TRANSLATION nonsense_mediated_decay start - 5 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000046367 Mgat4e ENSMUST00000052911 ENSMUSP00000125929 TRANSLATION protein_coding - CCDS48370.1 5 439.0 0.0 0.48 0.0 196.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046367 Mgat4e ENSMUST00000185836 ENSMUSP00000139781 TRANSLATION nonsense_mediated_decay start - 1 28.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000046367 Mgat4e ENSMUST00000172898 ENSMUSP00000133717 TRANSLATION protein_coding - CCDS48370.1 2 439.0 0.0 0.48 0.0 196.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000016181 Utp25 ENSMUST00000194124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016181 Utp25 ENSMUST00000194412 ENSMUSP00000142099 TRANSLATION nonsense_mediated_decay start - 5 27.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000016181 Utp25 ENSMUST00000194335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016181 Utp25 ENSMUST00000085555 ENSMUSP00000082691 TRANSLATION protein_coding - CCDS15631.1 1 768.0 0.0 5.41 1.2 651.0 0.0 -4,-6 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000016181 Utp25 ENSMUST00000193460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016181 Utp25 ENSMUST00000193070 - NO_TRANSLATION retained_intron ENSMUSG00000016181 Utp25 ENSMUST00000195848 ENSMUSP00000141950 TRANSLATION nonsense_mediated_decay - - 2 52.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000016181 Utp25 ENSMUST00000191928 - NO_TRANSLATION retained_intron ENSMUSG00000016181 Utp25 ENSMUST00000195291 ENSMUSP00000141676 TRANSLATION nonsense_mediated_decay - - 1 640.0 0.0 2.805 0.0 414.0 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000026459 Myog ENSMUST00000027730 ENSMUSP00000027730 TRANSLATION protein_coding - CCDS15306.1 1 224.0 0.0 1.0 8.5 136.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026185 Igfbp5 ENSMUST00000027377 ENSMUSP00000027377 TRANSLATION protein_coding - CCDS15037.1 1 271.0 0.0 2.4 5.8 108.3 0.0 2,-3 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000026185 Igfbp5 ENSMUST00000137339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073601 Serpinb3c ENSMUST00000027565 ENSMUSP00000027565 TRANSLATION protein_coding - CCDS35685.1 1 386.0 0.0 5.7 0.1 436.4 0.0 -4,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000056763 Cspp1 ENSMUST00000185422 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000190063 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000136283 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000190625 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000187226 ENSMUSP00000140076 TRANSLATION nonsense_mediated_decay start - 5 264.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0018 1 -2.0 MINOR ENSMUSG00000056763 Cspp1 ENSMUST00000153804 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000119714 ENSMUSP00000114091 TRANSLATION protein_coding - - 1 311.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.006 1 0.0 MINOR ENSMUSG00000056763 Cspp1 ENSMUST00000191521 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000148663 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000188449 ENSMUSP00000140725 TRANSLATION nonsense_mediated_decay start - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000056763 Cspp1 ENSMUST00000191012 ENSMUSP00000140856 TRANSLATION protein_coding stop - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000056763 Cspp1 ENSMUST00000190318 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000149214 ENSMUSP00000119258 TRANSLATION protein_coding start/stop - 5 153.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000056763 Cspp1 ENSMUST00000071087 ENSMUSP00000068804 TRANSLATION protein_coding - CCDS35511.1 1 1197.0 0.0 0.0 0.0 32.4 0.0 -4,-5 0.6041 9 0.0 ALTERNATIVE:2 ENSMUSG00000056763 Cspp1 ENSMUST00000191360 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000155974 ENSMUSP00000117726 TRANSLATION protein_coding stop - 3 102.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000056763 Cspp1 ENSMUST00000136898 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000188249 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000143606 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000118263 ENSMUSP00000112476 TRANSLATION protein_coding - - 1 311.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.006 1 0.0 MINOR ENSMUSG00000056763 Cspp1 ENSMUST00000190610 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000117415 ENSMUSP00000112800 TRANSLATION protein_coding - - 1 311.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.006 1 0.0 MINOR ENSMUSG00000056763 Cspp1 ENSMUST00000186294 ENSMUSP00000139775 TRANSLATION protein_coding - - 1 1142.0 0.0 0.0 0.0 32.4 0.0 -4,-5 0.866 8 0.0 PRINCIPAL:2 ENSMUSG00000056763 Cspp1 ENSMUST00000128164 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000122156 ENSMUSP00000113663 TRANSLATION protein_coding - - 1 319.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0041 2 0.0 MINOR ENSMUSG00000056763 Cspp1 ENSMUST00000134716 - NO_TRANSLATION retained_intron ENSMUSG00000056763 Cspp1 ENSMUST00000123261 - NO_TRANSLATION retained_intron ENSMUSG00000026109 Tmeff2 ENSMUST00000139157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026109 Tmeff2 ENSMUST00000114565 ENSMUSP00000110212 TRANSLATION protein_coding - - 1 262.0 0.0 1.0 0.0 39.1 1.0 -2,-5 0.0015 1 5.436 MINOR ENSMUSG00000026109 Tmeff2 ENSMUST00000186103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026109 Tmeff2 ENSMUST00000081851 ENSMUSP00000080533 TRANSLATION protein_coding - CCDS14939.1 1 374.0 0.0 2.55 13.7 76.1 2.0 -2,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000026255 Efhd1 ENSMUST00000150831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026255 Efhd1 ENSMUST00000027472 ENSMUSP00000027472 TRANSLATION protein_coding - CCDS15132.1 1 240.0 9.0 2.4 13.6 36.8 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000026255 Efhd1 ENSMUST00000118687 ENSMUSP00000112980 TRANSLATION nonsense_mediated_decay - CCDS15132.1 1 240.0 9.0 2.4 13.6 36.8 0.0 -4,-6 1.0 3 -2.0 MINOR ENSMUSG00000102483 Catspere1 ENSMUST00000194528 ENSMUSP00000159061 TRANSLATION protein_coding - - - 956.0 0.0 0.0 1.0 105.5 0.0 3,-2 0.8047 - 6.0 PRINCIPAL:1 ENSMUSG00000064272 Gpbar1 ENSMUST00000077985 ENSMUSP00000077135 TRANSLATION protein_coding - CCDS15042.1 - 329.0 0.0 1.0 10.7 57.1 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026239 Pde6d ENSMUST00000148683 - NO_TRANSLATION retained_intron ENSMUSG00000026239 Pde6d ENSMUST00000146220 ENSMUSP00000137820 TRANSLATION protein_coding - - 2 124.0 0.0 3.5 0.0 129.2 0.0 -4,-5 0.0 1 8.85 MINOR ENSMUSG00000026239 Pde6d ENSMUST00000150653 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026239 Pde6d ENSMUST00000143674 ENSMUSP00000137956 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 1.5 0.0 25.4 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000026239 Pde6d ENSMUST00000027444 ENSMUSP00000027444 TRANSLATION protein_coding - CCDS15121.1 1 150.0 0.0 4.25 27.6 156.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000006014 Prg4 ENSMUST00000161611 ENSMUSP00000125677 TRANSLATION protein_coding - CCDS48392.1 5 1221.0 0.0 4.765 0.0 289.0 0.0 4,-1 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000006014 Prg4 ENSMUST00000161320 ENSMUSP00000124801 TRANSLATION protein_coding stop - 5 179.0 0.0 1.375 0.0 45.1 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000006014 Prg4 ENSMUST00000162367 ENSMUSP00000125551 TRANSLATION protein_coding - CCDS48391.1 1 423.0 0.0 4.475 0.0 150.9 0.0 4,-1 0.0654 10 5.418 MINOR ENSMUSG00000006014 Prg4 ENSMUST00000159035 ENSMUSP00000124410 TRANSLATION protein_coding stop - 5 99.0 0.0 1.04 0.0 45.1 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000006014 Prg4 ENSMUST00000164600 ENSMUSP00000128943 TRANSLATION protein_coding - CCDS48392.1 5 1221.0 0.0 4.765 0.0 289.0 0.0 4,-1 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000006014 Prg4 ENSMUST00000006171 ENSMUSP00000006171 TRANSLATION protein_coding - CCDS48391.1 1 423.0 0.0 4.475 0.0 150.9 0.0 4,-1 0.0654 10 5.418 MINOR ENSMUSG00000026204 Ptprn ENSMUST00000186178 ENSMUSP00000139925 TRANSLATION protein_coding stop - 2 141.0 0.0 0.0 0.0 121.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026204 Ptprn ENSMUST00000189769 ENSMUSP00000140168 TRANSLATION protein_coding start/stop - 3 170.0 0.0 0.0 0.0 121.4 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000026204 Ptprn ENSMUST00000027404 ENSMUSP00000027404 TRANSLATION protein_coding - CCDS35625.1 1 981.0 11.0 9.5 1.7 483.7 0.0 1,-3 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000026204 Ptprn ENSMUST00000187216 - NO_TRANSLATION retained_intron ENSMUSG00000026204 Ptprn ENSMUST00000188401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026204 Ptprn ENSMUST00000185849 ENSMUSP00000140062 TRANSLATION protein_coding stop - 3 62.0 0.0 0.0 0.0 63.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000061616 Or9s13 ENSMUST00000081274 ENSMUSP00000080027 TRANSLATION protein_coding - CCDS15174.1 - 333.0 0.0 1.0 0.1 175.3 6.0 -2,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000061616 Or9s13 ENSMUST00000213247 ENSMUSP00000150858 TRANSLATION protein_coding - CCDS15174.1 5 333.0 0.0 1.0 0.1 175.3 6.0 -2,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000006412 Pfdn2 ENSMUST00000135941 ENSMUSP00000120106 TRANSLATION protein_coding - CCDS15491.1 1 154.0 0.0 3.3 16.4 105.6 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000006412 Pfdn2 ENSMUST00000138323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006412 Pfdn2 ENSMUST00000006579 ENSMUSP00000006579 TRANSLATION protein_coding start - 3 129.0 0.0 2.2 0.0 75.5 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000026374 Tsn ENSMUST00000189768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026374 Tsn ENSMUST00000188882 - NO_TRANSLATION retained_intron ENSMUSG00000026374 Tsn ENSMUST00000027623 ENSMUSP00000027623 TRANSLATION protein_coding - CCDS35690.1 1 228.0 0.0 5.5 23.6 194.8 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000026374 Tsn ENSMUST00000188512 - NO_TRANSLATION retained_intron ENSMUSG00000026374 Tsn ENSMUST00000186608 - NO_TRANSLATION retained_intron ENSMUSG00000026374 Tsn ENSMUST00000186163 - NO_TRANSLATION retained_intron ENSMUSG00000034107 Ano7 ENSMUST00000186641 ENSMUSP00000140438 TRANSLATION protein_coding - CCDS15188.1 5 859.0 0.0 12.56 0.1 757.7 8.0 -4,-5 0.5377 1 8.0 ALTERNATIVE:2 ENSMUSG00000034107 Ano7 ENSMUST00000058682 ENSMUSP00000050495 TRANSLATION protein_coding - CCDS78656.1 1 843.0 0.0 12.56 0.0 757.7 8.0 -4,-5 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000034107 Ano7 ENSMUST00000190340 ENSMUSP00000139733 TRANSLATION protein_coding start - 3 69.0 0.0 0.94 0.0 0.0 1.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000057329 Bcl2 ENSMUST00000189999 ENSMUSP00000139856 TRANSLATION protein_coding - CCDS78667.1 - 199.0 0.0 1.165 0.0 163.1 0.0 -4,-5 0.1349 1 10.662 MINOR ENSMUSG00000057329 Bcl2 ENSMUST00000112751 ENSMUSP00000108371 TRANSLATION protein_coding - CCDS15209.1 1 236.0 0.0 1.5 5.1 163.1 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000051081 Gm4847 ENSMUST00000046662 ENSMUSP00000039839 TRANSLATION protein_coding - CCDS48434.1 1 537.0 42.0 7.48 1.8 774.1 0.0 -2,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000117809 Asdurf ENSMUST00000236737 ENSMUSP00000158316 TRANSLATION protein_coding - - - 99.0 0.0 2.2 2.3 0.0 0.0 -4,-7 0.7477 4 7.0 PRINCIPAL:1 ENSMUSG00000032968 Inha ENSMUST00000037330 ENSMUSP00000040310 TRANSLATION protein_coding - CCDS15078.1 1 366.0 0.0 0.0 0.4 54.5 0.0 2,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000037395 Rcor3 ENSMUST00000193144 ENSMUSP00000142001 TRANSLATION protein_coding stop - 3 55.0 0.0 0.47 0.0 54.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037395 Rcor3 ENSMUST00000073279 ENSMUSP00000073004 TRANSLATION protein_coding - CCDS69995.1 1 451.0 0.0 3.4 2.6 79.8 0.0 -4,-5 0.5391 5 3.616 MINOR ENSMUSG00000037395 Rcor3 ENSMUST00000192158 ENSMUSP00000141841 TRANSLATION nonsense_mediated_decay - - 1 98.0 0.0 0.32 0.0 36.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037395 Rcor3 ENSMUST00000110849 ENSMUSP00000106473 TRANSLATION protein_coding - CCDS69996.1 1 434.0 0.0 4.15 5.7 79.8 0.0 -4,-5 1.0 4 6.436 MINOR ENSMUSG00000037395 Rcor3 ENSMUST00000192128 ENSMUSP00000141637 TRANSLATION protein_coding - CCDS78778.1 1 447.0 0.0 5.6 1.0 122.0 0.0 -4,-5 0.9604 6 8.0 PRINCIPAL:2 ENSMUSG00000037395 Rcor3 ENSMUST00000192866 ENSMUSP00000142054 TRANSLATION protein_coding - CCDS83667.1 5 551.0 0.0 5.6 0.0 122.0 0.0 -4,-5 0.2677 7 8.0 ALTERNATIVE:2 ENSMUSG00000037395 Rcor3 ENSMUST00000194395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037395 Rcor3 ENSMUST00000193322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037395 Rcor3 ENSMUST00000192491 ENSMUSP00000141753 TRANSLATION protein_coding - CCDS78777.1 1 351.0 0.0 3.4 0.1 79.8 0.0 -4,-5 0.0124 4 2.936 MINOR ENSMUSG00000037395 Rcor3 ENSMUST00000194750 ENSMUSP00000142076 TRANSLATION protein_coding start/stop - 3 281.0 0.0 3.95 0.0 42.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000037395 Rcor3 ENSMUST00000192222 ENSMUSP00000141270 TRANSLATION nonsense_mediated_decay start - 3 40.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037395 Rcor3 ENSMUST00000194362 - NO_TRANSLATION retained_intron ENSMUSG00000037395 Rcor3 ENSMUST00000194493 - NO_TRANSLATION retained_intron ENSMUSG00000037395 Rcor3 ENSMUST00000193664 - NO_TRANSLATION retained_intron ENSMUSG00000036086 Zranb3 ENSMUST00000086614 ENSMUSP00000083806 TRANSLATION protein_coding - CCDS35697.1 1 1069.0 10.0 7.55 2.8 153.6 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000036086 Zranb3 ENSMUST00000097597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036086 Zranb3 ENSMUST00000127393 - NO_TRANSLATION retained_intron ENSMUSG00000036086 Zranb3 ENSMUST00000143389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036086 Zranb3 ENSMUST00000131732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036086 Zranb3 ENSMUST00000112538 ENSMUSP00000108157 TRANSLATION protein_coding - CCDS35697.1 1 1069.0 10.0 7.55 2.8 153.6 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000036086 Zranb3 ENSMUST00000124876 - NO_TRANSLATION retained_intron ENSMUSG00000026415 Fcamr ENSMUST00000112477 ENSMUSP00000108096 TRANSLATION protein_coding - CCDS48353.1 1 591.0 0.0 0.8 0.1 47.6 1.0 -4,-5 0.3707 - 8.0 ALTERNATIVE:2 ENSMUSG00000026415 Fcamr ENSMUST00000027670 ENSMUSP00000027670 TRANSLATION protein_coding - CCDS15259.1 1 535.0 0.0 0.8 0.0 47.6 1.0 -2,-4 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000063558 Aox1 ENSMUST00000001027 ENSMUSP00000001027 TRANSLATION protein_coding - CCDS35575.1 1 1333.0 83.0 30.35 2.7 1101.6 0.0 -4,-5 1.0 35 19.0 PRINCIPAL:1 ENSMUSG00000063558 Aox1 ENSMUST00000160168 - NO_TRANSLATION retained_intron ENSMUSG00000026494 Kif26b ENSMUST00000160789 ENSMUSP00000124608 TRANSLATION protein_coding - - 1 1665.0 10.0 3.02 0.0 205.0 0.0 -4,-7 0.3239 5 12.0 ALTERNATIVE:2 ENSMUSG00000026494 Kif26b ENSMUST00000193931 - NO_TRANSLATION retained_intron ENSMUSG00000026494 Kif26b ENSMUST00000161017 ENSMUSP00000124462 TRANSLATION protein_coding - CCDS48464.1 1 2112.0 10.0 3.02 0.3 205.0 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:2 ENSMUSG00000026687 Aldh9a1 ENSMUST00000028004 ENSMUSP00000028004 TRANSLATION protein_coding - CCDS35765.1 1 518.0 27.0 11.0 5.2 574.1 0.0 0,2 1.0 23 20.0 PRINCIPAL:1 ENSMUSG00000026687 Aldh9a1 ENSMUST00000194843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026687 Aldh9a1 ENSMUST00000193091 - NO_TRANSLATION retained_intron ENSMUSG00000026687 Aldh9a1 ENSMUST00000191715 - NO_TRANSLATION retained_intron ENSMUSG00000025969 Nrp2 ENSMUST00000114157 ENSMUSP00000109794 TRANSLATION protein_coding - CCDS35589.1 1 931.0 9.0 10.6 12.5 617.6 2.0 1,-2 1.0 11 17.408 PRINCIPAL:4 ENSMUSG00000025969 Nrp2 ENSMUST00000114155 ENSMUSP00000109792 TRANSLATION protein_coding - CCDS35593.1 1 901.0 9.0 10.6 14.5 485.0 0.0 1,-2 0.8278 11 17.4 MINOR ENSMUSG00000025969 Nrp2 ENSMUST00000063594 ENSMUSP00000069379 TRANSLATION protein_coding - CCDS35590.1 1 926.0 9.0 10.6 12.5 617.6 2.0 1,-2 0.9604 11 17.408 ALTERNATIVE:1 ENSMUSG00000025969 Nrp2 ENSMUST00000027112 ENSMUSP00000027112 TRANSLATION protein_coding - CCDS35592.1 1 906.0 9.0 10.6 12.5 485.0 0.0 1,-2 0.7843 11 16.808 MINOR ENSMUSG00000025969 Nrp2 ENSMUST00000075144 ENSMUSP00000074642 TRANSLATION protein_coding - CCDS14995.1 1 914.0 9.0 10.6 1.1 617.6 2.0 1,-2 0.5536 11 14.028 MINOR ENSMUSG00000025969 Nrp2 ENSMUST00000102822 ENSMUSP00000099886 TRANSLATION protein_coding - CCDS35591.1 1 909.0 9.0 10.6 1.1 617.6 2.0 1,-2 0.5496 11 14.028 MINOR ENSMUSG00000025969 Nrp2 ENSMUST00000126344 - NO_TRANSLATION retained_intron ENSMUSG00000037499 Nenf ENSMUST00000046770 ENSMUSP00000046311 TRANSLATION protein_coding - CCDS15618.1 1 171.0 0.0 3.15 3.2 48.4 0.0 4,-1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000026341 Actr3 ENSMUST00000188362 - NO_TRANSLATION retained_intron ENSMUSG00000026341 Actr3 ENSMUST00000027579 ENSMUSP00000027579 TRANSLATION protein_coding - CCDS15242.1 5 418.0 23.0 11.49 31.2 192.8 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000026341 Actr3 ENSMUST00000191544 ENSMUSP00000139674 TRANSLATION protein_coding stop - 3 155.0 7.0 4.58 0.0 137.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026341 Actr3 ENSMUST00000188497 ENSMUSP00000140535 TRANSLATION protein_coding stop - 3 216.0 13.0 6.41 0.0 185.0 0.0 -4,-5 0.0029 7 -2.0 MINOR ENSMUSG00000026341 Actr3 ENSMUST00000191578 ENSMUSP00000139886 TRANSLATION nonsense_mediated_decay - - 5 41.0 6.0 1.0 0.0 27.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026341 Actr3 ENSMUST00000185280 ENSMUSP00000140082 TRANSLATION protein_coding stop - 5 70.0 1.0 2.25 0.0 61.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026341 Actr3 ENSMUST00000189192 - NO_TRANSLATION retained_intron ENSMUSG00000026341 Actr3 ENSMUST00000188827 - NO_TRANSLATION retained_intron ENSMUSG00000026341 Actr3 ENSMUST00000178474 ENSMUSP00000137503 TRANSLATION protein_coding - CCDS15242.1 1 418.0 23.0 11.49 31.2 192.8 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000026341 Actr3 ENSMUST00000186008 - NO_TRANSLATION retained_intron ENSMUSG00000026341 Actr3 ENSMUST00000187460 ENSMUSP00000140000 TRANSLATION protein_coding stop - 2 161.0 8.0 4.83 0.0 131.2 0.0 -4,-5 0.0004 5 -2.0 MINOR ENSMUSG00000026341 Actr3 ENSMUST00000191004 ENSMUSP00000140953 TRANSLATION protein_coding stop - 5 129.0 6.0 3.83 0.0 111.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000073722 4931408C20Rik ENSMUST00000097801 ENSMUSP00000095410 TRANSLATION protein_coding - CCDS14856.1 1 1381.0 0.0 1.0 0.0 89.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060679 Mrps9 ENSMUST00000187414 - NO_TRANSLATION retained_intron ENSMUSG00000060679 Mrps9 ENSMUST00000185376 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060679 Mrps9 ENSMUST00000057208 ENSMUSP00000056855 TRANSLATION protein_coding - CCDS14918.1 1 390.0 0.0 7.41 6.0 126.6 0.0 0,0 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000060679 Mrps9 ENSMUST00000201108 ENSMUSP00000143932 TRANSLATION nonsense_mediated_decay start - 5 129.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000060679 Mrps9 ENSMUST00000185523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060679 Mrps9 ENSMUST00000188174 - NO_TRANSLATION retained_intron ENSMUSG00000060679 Mrps9 ENSMUST00000202358 - NO_TRANSLATION retained_intron ENSMUSG00000078184 Rbm8a2 ENSMUST00000104983 ENSMUSP00000100599 TRANSLATION protein_coding - - - 174.0 0.0 1.0 0.0 65.2 0.0 -4,-5 0.7739 - 12.0 PRINCIPAL:1 ENSMUSG00000041722 Khdc1c ENSMUST00000070223 ENSMUSP00000068792 TRANSLATION protein_coding - CCDS48228.1 1 166.0 0.0 2.5 0.0 79.5 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046828 Mettl21e ENSMUST00000150062 - NO_TRANSLATION retained_intron ENSMUSG00000046828 Mettl21e ENSMUST00000054801 ENSMUSP00000056481 TRANSLATION protein_coding - CCDS14931.1 1 244.0 14.0 2.4 0.0 114.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000038305 Spats2l ENSMUST00000171699 ENSMUSP00000128239 TRANSLATION protein_coding stop - 5 270.0 0.0 1.75 0.0 258.2 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000038305 Spats2l ENSMUST00000164302 ENSMUSP00000132592 TRANSLATION protein_coding - - 5 488.0 0.0 2.75 7.6 370.0 0.0 -4,-5 0.4867 8 10.368 MINOR ENSMUSG00000038305 Spats2l ENSMUST00000168895 - NO_TRANSLATION retained_intron ENSMUSG00000038305 Spats2l ENSMUST00000172068 ENSMUSP00000126166 TRANSLATION protein_coding stop - 5 244.0 0.0 0.0 0.0 109.0 0.0 -4,-7 0.0001 4 -2.0 MINOR ENSMUSG00000038305 Spats2l ENSMUST00000167971 ENSMUSP00000128764 TRANSLATION protein_coding stop - 2 130.0 0.0 0.0 0.0 37.3 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000038305 Spats2l ENSMUST00000163922 - NO_TRANSLATION retained_intron ENSMUSG00000038305 Spats2l ENSMUST00000169772 ENSMUSP00000132975 TRANSLATION protein_coding - CCDS48267.1 1 557.0 0.0 2.75 12.5 425.9 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000038305 Spats2l ENSMUST00000170139 ENSMUSP00000127598 TRANSLATION protein_coding - CCDS48267.1 5 557.0 0.0 2.75 12.5 425.9 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000038305 Spats2l ENSMUST00000164353 - NO_TRANSLATION retained_intron ENSMUSG00000038305 Spats2l ENSMUST00000163239 ENSMUSP00000128992 TRANSLATION protein_coding - - 5 450.0 0.0 2.75 0.0 374.4 0.0 -4,-5 0.0234 9 8.91 MINOR ENSMUSG00000038305 Spats2l ENSMUST00000172287 ENSMUSP00000131125 TRANSLATION protein_coding stop - 5 108.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000038305 Spats2l ENSMUST00000165235 - NO_TRANSLATION retained_intron ENSMUSG00000038305 Spats2l ENSMUST00000168905 - NO_TRANSLATION retained_intron ENSMUSG00000038305 Spats2l ENSMUST00000167085 ENSMUSP00000133054 TRANSLATION protein_coding - CCDS35573.2 1 578.0 0.0 2.75 0.1 425.9 0.0 -4,-7 0.2794 10 12.0 MINOR ENSMUSG00000038305 Spats2l ENSMUST00000168016 - NO_TRANSLATION retained_intron ENSMUSG00000102418 Sh2d1b1 ENSMUST00000179976 ENSMUSP00000137069 TRANSLATION protein_coding - CCDS35767.1 1 132.0 0.0 2.816 6.5 57.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000116158 Kiss1 ENSMUST00000178033 ENSMUSP00000136746 TRANSLATION protein_coding - CCDS48362.1 1 126.0 0.0 0.0 0.8 114.7 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054387 Mdm4 ENSMUST00000186617 ENSMUSP00000140812 TRANSLATION protein_coding - - 1 318.0 0.0 2.4 0.0 30.5 0.0 -4,-7 0.0007 - 5.254 MINOR ENSMUSG00000054387 Mdm4 ENSMUST00000187244 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054387 Mdm4 ENSMUST00000067429 ENSMUSP00000070411 TRANSLATION protein_coding - CCDS15290.1 1 489.0 11.0 2.9 8.9 104.0 0.0 -4,-7 1.0 1 17.0 PRINCIPAL:4 ENSMUSG00000054387 Mdm4 ENSMUST00000187529 - NO_TRANSLATION retained_intron ENSMUSG00000054387 Mdm4 ENSMUST00000190312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054387 Mdm4 ENSMUST00000067398 ENSMUSP00000068661 TRANSLATION protein_coding - CCDS78683.1 1 490.0 11.0 2.9 8.9 103.4 0.0 -4,-7 0.9914 1 17.0 ALTERNATIVE:1 ENSMUSG00000054387 Mdm4 ENSMUST00000189596 - NO_TRANSLATION retained_intron ENSMUSG00000054387 Mdm4 ENSMUST00000190807 ENSMUSP00000140284 TRANSLATION protein_coding stop - 5 110.0 0.0 2.4 2.0 34.0 0.0 -4,-7 0.059 - -2.0 MINOR ENSMUSG00000054387 Mdm4 ENSMUST00000185418 - NO_TRANSLATION retained_intron ENSMUSG00000054387 Mdm4 ENSMUST00000186645 - NO_TRANSLATION retained_intron ENSMUSG00000054387 Mdm4 ENSMUST00000186513 - NO_TRANSLATION retained_intron ENSMUSG00000054387 Mdm4 ENSMUST00000191212 ENSMUSP00000140006 TRANSLATION nonsense_mediated_decay - - 1 128.0 0.0 2.4 0.0 34.0 0.0 -4,-7 0.0039 - -2.0 MINOR ENSMUSG00000054387 Mdm4 ENSMUST00000188090 ENSMUSP00000140609 TRANSLATION protein_coding - CCDS15290.1 1 489.0 11.0 2.9 8.9 104.0 0.0 -4,-7 1.0 1 17.0 PRINCIPAL:4 ENSMUSG00000054387 Mdm4 ENSMUST00000185398 ENSMUSP00000140090 TRANSLATION nonsense_mediated_decay - - 1 141.0 0.0 2.4 0.0 34.0 0.0 -4,-7 0.0039 - -2.0 MINOR ENSMUSG00000026389 Steap3 ENSMUST00000112639 ENSMUSP00000108258 TRANSLATION protein_coding - CCDS48343.1 1 488.0 19.0 4.0 14.0 110.8 6.0 -4,-5 1.0 14 21.808 PRINCIPAL:1 ENSMUSG00000026389 Steap3 ENSMUST00000112640 ENSMUSP00000108259 TRANSLATION protein_coding - CCDS48343.1 1 488.0 19.0 4.0 14.0 110.8 6.0 -4,-5 1.0 14 21.808 PRINCIPAL:1 ENSMUSG00000026389 Steap3 ENSMUST00000112643 ENSMUSP00000108262 TRANSLATION protein_coding - - 1 526.0 19.0 4.0 1.3 110.8 6.0 -4,-5 0.155 14 17.9 MINOR ENSMUSG00000026389 Steap3 ENSMUST00000112641 ENSMUSP00000108260 TRANSLATION protein_coding - CCDS48343.1 1 488.0 19.0 4.0 14.0 110.8 6.0 -4,-5 1.0 14 21.808 PRINCIPAL:1 ENSMUSG00000026389 Steap3 ENSMUST00000140490 ENSMUSP00000121046 TRANSLATION protein_coding stop - 1 418.0 19.0 3.12 0.0 114.0 3.0 -4,-5 0.0254 11 -2.0 MINOR ENSMUSG00000025915 Sgk3 ENSMUST00000188486 - NO_TRANSLATION retained_intron ENSMUSG00000025915 Sgk3 ENSMUST00000097826 ENSMUSP00000095437 TRANSLATION protein_coding - CCDS14816.1 1 496.0 20.0 12.15 3.3 329.3 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000025915 Sgk3 ENSMUST00000188782 ENSMUSP00000140318 TRANSLATION nonsense_mediated_decay - - 1 349.0 20.0 9.2 0.0 230.4 0.0 -4,-5 0.0006 4 -2.0 MINOR ENSMUSG00000025915 Sgk3 ENSMUST00000171265 ENSMUSP00000127462 TRANSLATION protein_coding - CCDS14816.1 1 496.0 20.0 12.15 3.3 329.3 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000025915 Sgk3 ENSMUST00000188625 - NO_TRANSLATION retained_intron ENSMUSG00000025915 Sgk3 ENSMUST00000188738 ENSMUSP00000140496 TRANSLATION nonsense_mediated_decay - - 1 333.0 20.0 9.164 0.0 230.4 0.0 -4,-5 0.0006 4 -2.0 MINOR ENSMUSG00000025915 Sgk3 ENSMUST00000188298 ENSMUSP00000139942 TRANSLATION nonsense_mediated_decay - - 1 68.0 0.0 1.75 0.0 29.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025915 Sgk3 ENSMUST00000168907 ENSMUSP00000126861 TRANSLATION protein_coding - CCDS14816.1 1 496.0 20.0 12.15 3.3 329.3 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000025915 Sgk3 ENSMUST00000166384 ENSMUSP00000130078 TRANSLATION protein_coding - CCDS14816.1 1 496.0 20.0 12.15 3.3 329.3 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000025915 Sgk3 ENSMUST00000191338 - NO_TRANSLATION retained_intron ENSMUSG00000025915 Sgk3 ENSMUST00000189050 - NO_TRANSLATION retained_intron ENSMUSG00000025915 Sgk3 ENSMUST00000188830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073489 Ifi204 ENSMUST00000192414 - NO_TRANSLATION retained_intron ENSMUSG00000073489 Ifi204 ENSMUST00000111214 ENSMUSP00000106845 TRANSLATION protein_coding - CCDS35792.1 5 619.0 0.0 5.33 0.0 530.7 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000045005 Fzd5 ENSMUST00000116133 ENSMUSP00000111828 TRANSLATION protein_coding - CCDS15008.1 1 585.0 0.0 0.8 11.0 588.1 6.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000045005 Fzd5 ENSMUST00000063982 ENSMUSP00000067783 TRANSLATION protein_coding - CCDS15008.1 1 585.0 0.0 0.8 11.0 588.1 6.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000049690 Nckap5 ENSMUST00000057846 ENSMUSP00000062229 TRANSLATION protein_coding - - 5 1777.0 0.0 0.958 0.0 385.5 0.0 -4,-5 0.3246 8 8.0 ALTERNATIVE:2 ENSMUSG00000049690 Nckap5 ENSMUST00000112583 ENSMUSP00000108202 TRANSLATION protein_coding - CCDS35695.1 5 1909.0 0.0 0.7705 0.0 385.5 0.0 -4,-5 0.4251 8 6.824 MINOR ENSMUSG00000049690 Nckap5 ENSMUST00000162646 ENSMUSP00000123936 TRANSLATION protein_coding stop - 3 188.0 0.0 0.958 0.0 0.0 0.0 -4,-5 0.0407 1 -2.0 MINOR ENSMUSG00000049690 Nckap5 ENSMUST00000162877 ENSMUSP00000124748 TRANSLATION protein_coding - - 1 338.0 0.0 0.958 0.0 120.2 0.0 -4,-5 0.0321 2 6.0 MINOR ENSMUSG00000049690 Nckap5 ENSMUST00000160693 ENSMUSP00000123975 TRANSLATION protein_coding stop - 3 139.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000049690 Nckap5 ENSMUST00000094610 ENSMUSP00000092193 TRANSLATION protein_coding - - 3 202.0 0.0 0.0 0.0 131.3 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000049690 Nckap5 ENSMUST00000160736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049690 Nckap5 ENSMUST00000162647 - NO_TRANSLATION retained_intron ENSMUSG00000049690 Nckap5 ENSMUST00000161954 ENSMUSP00000125624 TRANSLATION protein_coding - CCDS48345.1 1 1841.0 0.0 0.958 0.1 385.5 0.0 -4,-5 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000049690 Nckap5 ENSMUST00000162664 - NO_TRANSLATION retained_intron ENSMUSG00000049690 Nckap5 ENSMUST00000159934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049690 Nckap5 ENSMUST00000094609 ENSMUSP00000092192 TRANSLATION protein_coding - CCDS48346.1 5 406.0 0.0 0.958 0.0 120.2 0.0 -4,-5 0.1233 2 6.0 MINOR ENSMUSG00000062345 Serpinb2 ENSMUST00000146597 ENSMUSP00000119795 TRANSLATION nonsense_mediated_decay start - 5 35.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062345 Serpinb2 ENSMUST00000143832 ENSMUSP00000114751 TRANSLATION nonsense_mediated_decay start - 5 189.0 0.0 4.778 0.0 190.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000062345 Serpinb2 ENSMUST00000009356 ENSMUSP00000009356 TRANSLATION protein_coding - CCDS15219.1 1 415.0 0.0 6.755 11.4 422.3 0.0 -4,-7 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000062345 Serpinb2 ENSMUST00000064916 ENSMUSP00000065277 TRANSLATION protein_coding - CCDS15219.1 1 415.0 0.0 6.755 11.4 422.3 0.0 -4,-7 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000018199 Ro60 ENSMUST00000018343 - NO_TRANSLATION retained_intron ENSMUSG00000018199 Ro60 ENSMUST00000159879 ENSMUSP00000125623 TRANSLATION protein_coding - CCDS15345.1 1 538.0 3.0 8.0 22.0 320.5 0.0 -4,-5 1.0 16 19.0 PRINCIPAL:1 ENSMUSG00000118591 Gm52955 ENSMUST00000239361 ENSMUSP00000159208 TRANSLATION protein_coding - - - 296.0 0.0 1.0 0.1 0.0 0.0 -4,-7 0.6725 - 6.0 PRINCIPAL:1 ENSMUSG00000026158 Ogfrl1 ENSMUST00000027343 ENSMUSP00000027343 TRANSLATION protein_coding - CCDS35526.1 3 464.0 0.0 4.675 0.1 337.6 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000026158 Ogfrl1 ENSMUST00000188677 ENSMUSP00000139453 TRANSLATION protein_coding stop - 3 92.0 0.0 1.8 0.0 148.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026158 Ogfrl1 ENSMUST00000189537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026158 Ogfrl1 ENSMUST00000186064 - NO_TRANSLATION retained_intron ENSMUSG00000026080 Chst10 ENSMUST00000192948 ENSMUSP00000141470 TRANSLATION nonsense_mediated_decay start - 5 242.0 0.0 3.25 0.0 155.1 0.0 -4,-5 0.0037 1 -2.0 MINOR ENSMUSG00000026080 Chst10 ENSMUST00000194361 ENSMUSP00000141295 TRANSLATION protein_coding - - 1 356.0 0.0 4.6 16.0 175.9 0.0 2,-3 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026080 Chst10 ENSMUST00000027249 ENSMUSP00000027249 TRANSLATION protein_coding - - 1 356.0 0.0 4.6 16.0 175.9 0.0 2,-3 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026080 Chst10 ENSMUST00000194657 ENSMUSP00000141481 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0022 - -2.0 MINOR ENSMUSG00000026080 Chst10 ENSMUST00000193441 ENSMUSP00000142028 TRANSLATION protein_coding - - 1 178.0 0.0 2.6 0.0 37.7 0.0 2,-3 0.002 1 1.998 MINOR ENSMUSG00000026080 Chst10 ENSMUST00000192175 - NO_TRANSLATION retained_intron ENSMUSG00000026080 Chst10 ENSMUST00000195731 - NO_TRANSLATION retained_intron ENSMUSG00000026080 Chst10 ENSMUST00000193435 ENSMUSP00000141604 TRANSLATION protein_coding stop - 3 64.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0022 - -2.0 MINOR ENSMUSG00000113880 A030005L19Rik ENSMUST00000220768 ENSMUSP00000152156 TRANSLATION protein_coding - - - 113.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.5813 - 0.0 PRINCIPAL:1 ENSMUSG00000026430 Rassf5 ENSMUST00000124796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026430 Rassf5 ENSMUST00000212202 ENSMUSP00000148646 TRANSLATION protein_coding - - 5 313.0 4.0 4.748 0.0 116.9 0.0 -2,1 0.003 6 11.928 MINOR ENSMUSG00000026430 Rassf5 ENSMUST00000027688 ENSMUSP00000027688 TRANSLATION protein_coding - CCDS15268.1 1 413.0 8.0 5.248 5.4 151.4 0.0 -4,-5 0.925 7 19.092 PRINCIPAL:1 ENSMUSG00000026430 Rassf5 ENSMUST00000112442 ENSMUSP00000108061 TRANSLATION protein_coding - CCDS83589.1 1 321.0 8.0 2.3 0.0 34.5 0.0 -4,-5 0.0054 5 6.102 MINOR ENSMUSG00000026430 Rassf5 ENSMUST00000068564 ENSMUSP00000067011 TRANSLATION protein_coding - CCDS78675.1 1 265.0 0.0 3.948 17.1 116.9 0.0 -4,-5 1.0 5 11.332 MINOR ENSMUSG00000087230 Mroh3 ENSMUST00000166708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087230 Mroh3 ENSMUST00000133030 - NO_TRANSLATION retained_intron ENSMUSG00000087230 Mroh3 ENSMUST00000146112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087230 Mroh3 ENSMUST00000212798 ENSMUSP00000148632 TRANSLATION protein_coding - - 5 893.0 0.0 0.0 2.5 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000087230 Mroh3 ENSMUST00000168561 ENSMUSP00000148841 TRANSLATION nonsense_mediated_decay - - 5 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0176 - -2.0 MINOR ENSMUSG00000064302 Clasp1 ENSMUST00000203009 - NO_TRANSLATION retained_intron ENSMUSG00000064302 Clasp1 ENSMUST00000190571 ENSMUSP00000140019 TRANSLATION protein_coding - - 5 1552.0 0.0 22.54 0.0 182.0 0.0 -4,-5 1.0 40 8.0 PRINCIPAL:2 ENSMUSG00000064302 Clasp1 ENSMUST00000185405 ENSMUSP00000139619 TRANSLATION protein_coding - - 5 1492.0 0.0 21.79 0.0 182.0 0.0 -4,-5 0.368 41 6.5 MINOR ENSMUSG00000064302 Clasp1 ENSMUST00000204886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064302 Clasp1 ENSMUST00000205176 ENSMUSP00000144818 TRANSLATION protein_coding start/stop - 5 285.0 0.0 1.8 0.0 0.0 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000064302 Clasp1 ENSMUST00000186349 ENSMUSP00000141105 TRANSLATION protein_coding - - 5 1536.0 0.0 22.54 0.0 182.0 0.0 -4,-5 0.506 42 8.0 ALTERNATIVE:2 ENSMUSG00000064302 Clasp1 ENSMUST00000189384 - NO_TRANSLATION retained_intron ENSMUSG00000064302 Clasp1 ENSMUST00000204552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064302 Clasp1 ENSMUST00000188710 ENSMUSP00000140593 TRANSLATION protein_coding - - 5 1526.0 0.0 22.54 0.0 182.0 0.0 -4,-5 0.5016 42 8.0 ALTERNATIVE:2 ENSMUSG00000064302 Clasp1 ENSMUST00000204325 ENSMUSP00000144798 TRANSLATION nonsense_mediated_decay start - 5 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0592 - -2.0 MINOR ENSMUSG00000064302 Clasp1 ENSMUST00000189262 ENSMUSP00000140860 TRANSLATION protein_coding - - 5 1460.0 0.0 22.54 0.0 182.0 0.0 -4,-5 0.4135 41 8.0 ALTERNATIVE:2 ENSMUSG00000064302 Clasp1 ENSMUST00000191823 ENSMUSP00000142203 TRANSLATION protein_coding - - 5 1244.0 0.0 16.21 0.0 135.1 0.0 -4,-5 0.0271 32 2.0 MINOR ENSMUSG00000064302 Clasp1 ENSMUST00000187575 - NO_TRANSLATION retained_intron ENSMUSG00000064302 Clasp1 ENSMUST00000187713 ENSMUSP00000139526 TRANSLATION protein_coding - - 5 1475.0 0.0 22.54 0.0 182.0 0.0 -4,-5 0.4212 40 8.0 ALTERNATIVE:2 ENSMUSG00000064302 Clasp1 ENSMUST00000203646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064302 Clasp1 ENSMUST00000188441 - NO_TRANSLATION retained_intron ENSMUSG00000064302 Clasp1 ENSMUST00000189676 - NO_TRANSLATION retained_intron ENSMUSG00000064302 Clasp1 ENSMUST00000178710 ENSMUSP00000137137 TRANSLATION protein_coding - - 5 1459.0 0.0 22.54 0.0 182.0 0.0 -4,-5 0.4135 41 8.0 ALTERNATIVE:2 ENSMUSG00000064302 Clasp1 ENSMUST00000165223 ENSMUSP00000128089 TRANSLATION protein_coding - - 5 1452.0 0.0 22.54 0.0 182.0 0.0 -4,-5 0.4092 42 8.0 ALTERNATIVE:2 ENSMUSG00000064302 Clasp1 ENSMUST00000191445 ENSMUSP00000140095 TRANSLATION protein_coding - - 5 1469.0 0.0 22.54 0.0 182.0 0.0 -4,-5 0.4239 41 8.0 ALTERNATIVE:2 ENSMUSG00000064302 Clasp1 ENSMUST00000189738 ENSMUSP00000140665 TRANSLATION protein_coding - - 5 1477.0 0.0 22.54 0.0 182.0 0.0 -4,-5 0.4213 40 8.0 ALTERNATIVE:2 ENSMUSG00000064302 Clasp1 ENSMUST00000190135 - NO_TRANSLATION retained_intron ENSMUSG00000064302 Clasp1 ENSMUST00000190733 ENSMUSP00000140778 TRANSLATION nonsense_mediated_decay - - 5 73.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000064302 Clasp1 ENSMUST00000203870 - NO_TRANSLATION retained_intron ENSMUSG00000064302 Clasp1 ENSMUST00000204904 ENSMUSP00000145100 TRANSLATION nonsense_mediated_decay start - 5 177.0 0.0 3.58 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000064302 Clasp1 ENSMUST00000189216 - NO_TRANSLATION retained_intron ENSMUSG00000064302 Clasp1 ENSMUST00000189570 ENSMUSP00000140167 TRANSLATION protein_coding - - 5 1468.0 0.0 22.54 0.0 182.0 0.0 -4,-5 0.4261 41 8.0 ALTERNATIVE:2 ENSMUSG00000064302 Clasp1 ENSMUST00000049404 ENSMUSP00000042266 TRANSLATION protein_coding - - 5 1536.0 0.0 22.54 0.0 182.0 0.0 -4,-5 0.506 42 8.0 ALTERNATIVE:2 ENSMUSG00000064302 Clasp1 ENSMUST00000192387 ENSMUSP00000141582 TRANSLATION protein_coding start/stop - 5 345.0 0.0 2.25 0.0 0.0 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000026117 Zap70 ENSMUST00000185871 ENSMUSP00000139990 TRANSLATION protein_coding stop - 2 85.0 0.0 1.0 0.0 63.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026117 Zap70 ENSMUST00000186624 - NO_TRANSLATION retained_intron ENSMUSG00000026117 Zap70 ENSMUST00000027291 ENSMUSP00000027291 TRANSLATION protein_coding - CCDS14888.1 1 618.0 3.0 9.765 10.6 440.2 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000026117 Zap70 ENSMUST00000190128 - NO_TRANSLATION retained_intron ENSMUSG00000026253 Chrng ENSMUST00000189392 - NO_TRANSLATION retained_intron ENSMUSG00000026253 Chrng ENSMUST00000186038 ENSMUSP00000141001 TRANSLATION protein_coding stop - 1 220.0 0.0 4.05 0.0 206.2 0.0 -2,-4 0.0 - -2.0 MINOR ENSMUSG00000026253 Chrng ENSMUST00000188796 ENSMUSP00000140796 TRANSLATION protein_coding stop - 1 146.0 0.0 3.05 0.0 113.7 0.0 2,-2 0.0008 - -2.0 MINOR ENSMUSG00000026253 Chrng ENSMUST00000027470 ENSMUSP00000027470 TRANSLATION protein_coding - CCDS35651.1 1 519.0 0.0 7.57 8.2 438.8 0.0 2,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026253 Chrng ENSMUST00000185763 ENSMUSP00000139600 TRANSLATION protein_coding stop - 1 255.0 0.0 4.05 0.0 187.8 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026627 Pacc1 ENSMUST00000027940 ENSMUSP00000027940 TRANSLATION protein_coding - CCDS15619.1 1 350.0 0.0 6.0 11.3 562.8 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000026618 Iars2 ENSMUST00000131770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026618 Iars2 ENSMUST00000110975 ENSMUSP00000106603 TRANSLATION protein_coding - - 5 733.0 15.0 16.1 0.0 558.6 0.0 -3,1 0.0138 23 6.54 MINOR ENSMUSG00000026618 Iars2 ENSMUST00000110974 ENSMUSP00000106601 TRANSLATION protein_coding - - 1 560.0 6.0 11.1 0.0 426.1 0.0 -3,1 0.0006 16 0.0 MINOR ENSMUSG00000026618 Iars2 ENSMUST00000153211 - NO_TRANSLATION retained_intron ENSMUSG00000026618 Iars2 ENSMUST00000027921 ENSMUSP00000027921 TRANSLATION protein_coding - CCDS15596.1 1 1012.0 15.0 22.1 9.2 649.6 0.0 -3,1 1.0 35 21.0 PRINCIPAL:1 ENSMUSG00000026307 Scly ENSMUST00000124832 ENSMUSP00000116382 TRANSLATION protein_coding start/stop - 3 216.0 8.0 4.23445 0.0 89.4 0.0 -4,-5 0.0002 3 -2.0 MINOR ENSMUSG00000026307 Scly ENSMUST00000154045 ENSMUSP00000137796 TRANSLATION nonsense_mediated_decay - - 3 61.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026307 Scly ENSMUST00000145843 ENSMUSP00000116824 TRANSLATION protein_coding stop - 3 68.0 3.0 2.08 0.0 45.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026307 Scly ENSMUST00000142802 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026307 Scly ENSMUST00000027532 ENSMUSP00000027532 TRANSLATION protein_coding - CCDS15159.1 1 432.0 14.0 10.59 0.1 188.6 0.0 -4,-5 0.9795 10 18.0 PRINCIPAL:1 ENSMUSG00000026307 Scly ENSMUST00000153621 - NO_TRANSLATION retained_intron ENSMUSG00000026307 Scly ENSMUST00000142488 ENSMUSP00000119979 TRANSLATION protein_coding stop - 3 245.0 10.0 4.76 0.0 101.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026307 Scly ENSMUST00000147523 ENSMUSP00000114759 TRANSLATION protein_coding start/stop - 3 249.0 14.0 5.508 0.0 134.9 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000026307 Scly ENSMUST00000137074 ENSMUSP00000122449 TRANSLATION protein_coding start/stop - 5 218.0 12.0 4.112 0.0 97.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026307 Scly ENSMUST00000123651 - NO_TRANSLATION retained_intron ENSMUSG00000026085 Lyg1 ENSMUST00000144184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026085 Lyg1 ENSMUST00000114894 ENSMUSP00000110544 TRANSLATION protein_coding - CCDS35543.1 1 197.0 0.0 3.2 1.6 0.0 0.0 3,-2 1.0 6 7.0 PRINCIPAL:2 ENSMUSG00000026085 Lyg1 ENSMUST00000027254 ENSMUSP00000027254 TRANSLATION protein_coding - - 5 197.0 0.0 3.04 1.6 0.0 0.0 3,-2 0.6364 5 6.682 ALTERNATIVE:2 ENSMUSG00000061584 Lyg2 ENSMUST00000078307 ENSMUSP00000077422 TRANSLATION protein_coding - CCDS14897.1 1 213.0 0.0 4.0 9.9 0.0 0.0 3,-3 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000026131 Dst ENSMUST00000189952 - NO_TRANSLATION retained_intron ENSMUSG00000026131 Dst ENSMUST00000187486 ENSMUSP00000140560 TRANSLATION protein_coding stop - 5 1471.0 0.0 24.93 0.0 184.7 0.0 -4,-6 0.0261 27 -2.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000182018 ENSMUSP00000138426 TRANSLATION protein_coding start - 5 1638.0 15.0 6.59 0.0 526.9 0.0 -4,-5 0.0293 29 -2.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000194192 ENSMUSP00000148563 TRANSLATION protein_coding stop - 5 1674.0 0.0 3.3 0.0 300.7 0.0 -4,-5 0.0226 36 -2.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000097786 ENSMUSP00000095393 TRANSLATION protein_coding - CCDS35535.1 1 5379.0 14.0 33.2 5.3 1027.3 0.0 -4,-5 1.0 117 14.134 MINOR ENSMUSG00000026131 Dst ENSMUST00000239001 ENSMUSP00000159126 TRANSLATION protein_coding stop - - 153.0 0.0 4.55 0.0 85.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000185269 ENSMUSP00000141127 TRANSLATION protein_coding - - 5 5175.0 15.0 23.87 0.0 875.7 0.0 -4,-2 0.228 116 6.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000185897 ENSMUSP00000139888 TRANSLATION protein_coding stop - 5 2987.0 0.0 15.68 0.0 92.8 0.0 -4,-2 0.0595 52 -2.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000097785 ENSMUSP00000095392 TRANSLATION protein_coding - CCDS35534.1 1 7393.0 14.0 33.2 0.0 1093.8 0.0 -4,-5 0.445 148 13.334 ALTERNATIVE:2 ENSMUSG00000026131 Dst ENSMUST00000185736 - NO_TRANSLATION retained_intron ENSMUSG00000026131 Dst ENSMUST00000183100 ENSMUSP00000138570 TRANSLATION protein_coding start/stop - 3 262.0 15.0 4.5 0.0 158.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000183302 ENSMUSP00000138376 TRANSLATION protein_coding - CCDS69875.1 1 2639.0 0.0 15.845 0.8 199.1 0.0 -4,-2 0.1412 41 0.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000182697 ENSMUSP00000141811 TRANSLATION protein_coding - - 1 274.0 0.0 5.25 0.0 115.5 0.0 -4,-6 0.0 5 0.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000183034 ENSMUSP00000138308 TRANSLATION protein_coding - CCDS69874.1 5 7717.0 14.0 33.12 0.0 1098.5 0.0 0,-5 0.5052 155 13.172 PRINCIPAL:3 ENSMUSG00000026131 Dst ENSMUST00000182335 - NO_TRANSLATION retained_intron ENSMUSG00000026131 Dst ENSMUST00000182507 ENSMUSP00000138591 TRANSLATION protein_coding start/stop - 2 259.0 15.0 3.75 0.0 158.8 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000182410 - NO_TRANSLATION retained_intron ENSMUSG00000026131 Dst ENSMUST00000182314 ENSMUSP00000142098 TRANSLATION protein_coding - - 1 282.0 0.0 5.25 0.0 115.5 0.0 -4,-7 0.0 5 0.0 MINOR ENSMUSG00000026131 Dst ENSMUST00000183331 - NO_TRANSLATION retained_intron ENSMUSG00000026131 Dst ENSMUST00000183006 ENSMUSP00000158838 TRANSLATION protein_coding stop - 5 386.0 0.0 3.75 0.0 72.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000047496 Rnf152 ENSMUST00000172299 ENSMUSP00000128632 TRANSLATION protein_coding - CCDS15204.1 2 203.0 8.0 0.2 27.0 31.9 1.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000047496 Rnf152 ENSMUST00000058688 ENSMUSP00000050103 TRANSLATION protein_coding - CCDS15204.1 1 203.0 8.0 0.2 27.0 31.9 1.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000041605 Inava ENSMUST00000194374 - NO_TRANSLATION retained_intron ENSMUSG00000041605 Inava ENSMUST00000120339 ENSMUSP00000113785 TRANSLATION protein_coding - - 1 663.0 0.0 0.0 1.0 186.8 0.0 -4,-5 0.7717 2 6.0 PRINCIPAL:1 ENSMUSG00000041605 Inava ENSMUST00000153910 ENSMUSP00000120263 TRANSLATION nonsense_mediated_decay - - 3 83.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041605 Inava ENSMUST00000195177 ENSMUSP00000141506 TRANSLATION protein_coding stop - 3 78.0 0.0 0.0 0.0 109.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041605 Inava ENSMUST00000144464 ENSMUSP00000115554 TRANSLATION protein_coding stop - 5 200.0 0.0 0.0 0.0 186.8 0.0 -4,-5 0.0521 1 -2.0 MINOR ENSMUSG00000041605 Inava ENSMUST00000150163 ENSMUSP00000118074 TRANSLATION protein_coding stop - 3 212.0 0.0 0.0 0.0 186.8 0.0 -4,-5 0.0566 1 -2.0 MINOR ENSMUSG00000049515 Espnl ENSMUST00000176156 ENSMUSP00000135828 TRANSLATION protein_coding - - 5 961.0 0.0 4.3 0.0 128.3 0.0 -4,-5 0.0235 - 9.714 MINOR ENSMUSG00000049515 Espnl ENSMUST00000088904 ENSMUSP00000086294 TRANSLATION protein_coding - CCDS15160.1 1 1005.0 0.0 5.1 0.4 139.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000070732 Rbm44 ENSMUST00000188818 ENSMUSP00000140854 TRANSLATION protein_coding stop - 3 177.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000070732 Rbm44 ENSMUST00000190965 - NO_TRANSLATION retained_intron ENSMUSG00000070732 Rbm44 ENSMUST00000094698 ENSMUSP00000092286 TRANSLATION protein_coding - CCDS15157.1 1 1013.0 0.0 0.675 0.0 31.9 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000070732 Rbm44 ENSMUST00000185229 - NO_TRANSLATION retained_intron ENSMUSG00000025977 Boll ENSMUST00000159564 ENSMUSP00000124962 TRANSLATION nonsense_mediated_decay - - 5 87.0 0.0 1.831 0.0 40.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025977 Boll ENSMUST00000087585 ENSMUSP00000084868 TRANSLATION protein_coding - CCDS48262.1 1 293.0 0.0 3.081 5.7 72.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025977 Boll ENSMUST00000161810 ENSMUSP00000138084 TRANSLATION nonsense_mediated_decay start - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025977 Boll ENSMUST00000114423 ENSMUSP00000110066 TRANSLATION protein_coding - CCDS48261.1 1 160.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0276 - 0.0 MINOR ENSMUSG00000025977 Boll ENSMUST00000174065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025977 Boll ENSMUST00000173983 ENSMUSP00000134054 TRANSLATION protein_coding start - 5 282.0 0.0 2.85 1.0 72.7 0.0 -4,-5 0.1375 - -2.0 MINOR ENSMUSG00000025977 Boll ENSMUST00000159398 ENSMUSP00000123814 TRANSLATION protein_coding - - 1 132.0 0.0 3.081 0.0 72.7 0.0 -4,-5 0.0594 - 12.0 MINOR ENSMUSG00000026603 Smyd2 ENSMUST00000132289 - NO_TRANSLATION retained_intron ENSMUSG00000026603 Smyd2 ENSMUST00000144452 - NO_TRANSLATION retained_intron ENSMUSG00000026603 Smyd2 ENSMUST00000027897 ENSMUSP00000027897 TRANSLATION protein_coding - CCDS35821.1 1 433.0 26.0 11.0 17.5 91.1 0.0 -4,-1 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000026603 Smyd2 ENSMUST00000130804 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052428 Tmco1 ENSMUST00000195015 ENSMUSP00000142042 TRANSLATION protein_coding - CCDS15456.1 1 188.0 0.0 5.26 36.0 148.6 2.0 1,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000052428 Tmco1 ENSMUST00000193101 ENSMUSP00000141373 TRANSLATION protein_coding start - 5 127.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052428 Tmco1 ENSMUST00000193446 ENSMUSP00000141241 TRANSLATION protein_coding start - 1 200.0 0.0 4.51 0.0 132.9 2.0 -4,-6 0.0063 2 -2.0 MINOR ENSMUSG00000052428 Tmco1 ENSMUST00000097473 ENSMUSP00000095081 TRANSLATION nonsense_mediated_decay - CCDS15456.1 1 188.0 0.0 5.26 36.0 148.6 2.0 1,-3 1.0 - -2.0 MINOR ENSMUSG00000010175 Prox1 ENSMUST00000010319 ENSMUSP00000010319 TRANSLATION protein_coding - CCDS35822.1 1 737.0 0.0 3.0 27.8 277.3 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000010175 Prox1 ENSMUST00000177288 ENSMUSP00000135066 TRANSLATION protein_coding - CCDS35822.1 5 737.0 0.0 3.0 27.8 277.3 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000010175 Prox1 ENSMUST00000175916 ENSMUSP00000135703 TRANSLATION protein_coding - CCDS35822.1 1 737.0 0.0 3.0 27.8 277.3 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000034212 Ankmy1 ENSMUST00000112998 ENSMUSP00000108622 TRANSLATION protein_coding - CCDS15178.2 5 1001.0 8.0 5.018 0.0 150.8 0.0 -4,-5 0.9955 2 14.0 ALTERNATIVE:2 ENSMUSG00000034212 Ankmy1 ENSMUST00000212504 ENSMUSP00000148578 TRANSLATION protein_coding start - 5 139.0 8.0 0.0 0.0 30.1 0.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000034212 Ankmy1 ENSMUST00000160548 ENSMUSP00000123787 TRANSLATION protein_coding - CCDS83575.1 2 1002.0 8.0 5.018 0.0 150.8 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:4 ENSMUSG00000070594 Cfhr4 ENSMUST00000111986 ENSMUSP00000107617 TRANSLATION protein_coding - CCDS48387.1 1 820.0 0.0 11.93 0.0 318.9 0.0 3,-2 0.2443 14 8.022 MINOR ENSMUSG00000070594 Cfhr4 ENSMUST00000111989 ENSMUSP00000107620 TRANSLATION protein_coding - CCDS35730.1 1 879.0 0.0 12.73 0.0 358.5 0.0 3,-2 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000070594 Cfhr4 ENSMUST00000027612 ENSMUSP00000027612 TRANSLATION protein_coding - - 1 808.0 0.0 12.4 0.0 332.1 0.0 3,-2 0.1471 12 9.756 MINOR ENSMUSG00000009633 G0s2 ENSMUST00000009777 ENSMUSP00000009777 TRANSLATION protein_coding - CCDS15636.1 1 103.0 0.0 0.8 10.0 144.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051998 Lax1 ENSMUST00000169295 ENSMUSP00000131126 TRANSLATION protein_coding - CCDS35711.1 1 407.0 0.0 0.0 0.1 560.7 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000051998 Lax1 ENSMUST00000189524 ENSMUSP00000140039 TRANSLATION protein_coding - - 2 50.0 2.0 0.0 0.0 0.0 0.0 -4,-6 0.0015 - 2.0 MINOR ENSMUSG00000090553 Snrpe ENSMUST00000166291 ENSMUSP00000132376 TRANSLATION protein_coding - - 3 52.0 0.0 1.58 0.0 0.0 0.0 -4,-1 0.0 2 3.258 MINOR ENSMUSG00000090553 Snrpe ENSMUST00000171264 ENSMUSP00000132543 TRANSLATION protein_coding stop - 5 25.0 2.0 0.5 0.0 27.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090553 Snrpe ENSMUST00000166915 ENSMUSP00000128400 TRANSLATION protein_coding - CCDS48364.1 1 92.0 5.0 2.91 34.9 63.7 0.0 -4,-1 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000090553 Snrpe ENSMUST00000164096 ENSMUSP00000127164 TRANSLATION protein_coding - - 2 91.0 2.0 2.41 0.0 45.5 0.0 -4,-1 0.0208 2 11.252 MINOR ENSMUSG00000090553 Snrpe ENSMUST00000164574 ENSMUSP00000131061 TRANSLATION protein_coding - - 3 69.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0007 - 0.0 MINOR ENSMUSG00000090553 Snrpe ENSMUST00000172079 ENSMUSP00000133244 TRANSLATION nonsense_mediated_decay - - 2 69.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0007 - -2.0 MINOR ENSMUSG00000026311 Asb1 ENSMUST00000086843 ENSMUSP00000084054 TRANSLATION protein_coding - CCDS35665.1 1 336.0 0.0 3.13 7.3 93.8 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000026311 Asb1 ENSMUST00000185718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026311 Asb1 ENSMUST00000027538 ENSMUSP00000027538 TRANSLATION protein_coding - - 1 96.0 0.0 1.65 0.0 42.4 0.0 -4,-7 0.0 2 5.754 MINOR ENSMUSG00000026311 Asb1 ENSMUST00000186068 ENSMUSP00000140225 TRANSLATION protein_coding stop - 1 89.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026311 Asb1 ENSMUST00000188879 ENSMUSP00000140731 TRANSLATION protein_coding - CCDS35666.1 1 328.0 0.0 2.995 0.8 93.8 0.0 -4,-5 0.3041 5 11.73 MINOR ENSMUSG00000026311 Asb1 ENSMUST00000188081 ENSMUSP00000140165 TRANSLATION protein_coding - - 1 301.0 0.0 1.745 0.0 51.4 0.0 -4,-5 0.0028 4 6.516 MINOR ENSMUSG00000026311 Asb1 ENSMUST00000190484 ENSMUSP00000140281 TRANSLATION protein_coding stop - 1 218.0 0.0 2.03 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026353 Ubxn4 ENSMUST00000189895 - NO_TRANSLATION retained_intron ENSMUSG00000026353 Ubxn4 ENSMUST00000187031 - NO_TRANSLATION retained_intron ENSMUSG00000026353 Ubxn4 ENSMUST00000190736 ENSMUSP00000141085 TRANSLATION protein_coding stop - 5 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026353 Ubxn4 ENSMUST00000027592 ENSMUSP00000027592 TRANSLATION protein_coding - CCDS15251.1 1 506.0 0.0 2.4 11.1 65.9 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000026535 Ifi202b ENSMUST00000000266 ENSMUSP00000000266 TRANSLATION protein_coding - CCDS35794.1 1 445.0 0.0 4.13 0.0 415.7 0.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000042699 Dhx9 ENSMUST00000190544 ENSMUSP00000140764 TRANSLATION nonsense_mediated_decay start - 1 47.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042699 Dhx9 ENSMUST00000186966 ENSMUSP00000139806 TRANSLATION nonsense_mediated_decay - - 1 459.0 9.0 8.85 0.0 96.2 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000042699 Dhx9 ENSMUST00000188345 ENSMUSP00000139827 TRANSLATION protein_coding stop - 1 735.0 10.0 14.75 0.0 171.6 0.0 -4,-5 0.0035 21 -2.0 MINOR ENSMUSG00000042699 Dhx9 ENSMUST00000189425 - NO_TRANSLATION retained_intron ENSMUSG00000042699 Dhx9 ENSMUST00000190383 - NO_TRANSLATION retained_intron ENSMUSG00000042699 Dhx9 ENSMUST00000189516 - NO_TRANSLATION retained_intron ENSMUSG00000042699 Dhx9 ENSMUST00000189509 - NO_TRANSLATION retained_intron ENSMUSG00000042699 Dhx9 ENSMUST00000186380 ENSMUSP00000139825 TRANSLATION protein_coding - CCDS78706.1 2 1383.0 10.0 21.03 0.0 287.8 0.0 -4,-5 1.0 38 14.0 PRINCIPAL:4 ENSMUSG00000042699 Dhx9 ENSMUST00000042141 ENSMUSP00000038135 TRANSLATION protein_coding - - 5 1384.0 10.0 21.03 0.0 287.8 0.0 -4,-5 0.7607 38 14.0 ALTERNATIVE:2 ENSMUSG00000026516 Nvl ENSMUST00000193758 - NO_TRANSLATION retained_intron ENSMUSG00000026516 Nvl ENSMUST00000027797 ENSMUSP00000027797 TRANSLATION protein_coding - CCDS15581.1 1 855.0 24.0 12.55 8.1 406.7 0.0 -4,-2 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000026516 Nvl ENSMUST00000195209 - NO_TRANSLATION retained_intron ENSMUSG00000026516 Nvl ENSMUST00000191721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026516 Nvl ENSMUST00000191728 - NO_TRANSLATION retained_intron ENSMUSG00000026213 Stk11ip ENSMUST00000113553 ENSMUSP00000109182 TRANSLATION protein_coding - CCDS15079.1 1 1072.0 0.0 3.67 0.1 141.4 0.0 -4,-6 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000026213 Stk11ip ENSMUST00000154303 - NO_TRANSLATION retained_intron ENSMUSG00000026213 Stk11ip ENSMUST00000140963 - NO_TRANSLATION retained_intron ENSMUSG00000026213 Stk11ip ENSMUST00000146575 - NO_TRANSLATION retained_intron ENSMUSG00000026213 Stk11ip ENSMUST00000129794 - NO_TRANSLATION retained_intron ENSMUSG00000026213 Stk11ip ENSMUST00000027414 ENSMUSP00000027414 TRANSLATION protein_coding - CCDS15079.1 1 1072.0 0.0 3.67 0.1 141.4 0.0 -4,-6 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000026213 Stk11ip ENSMUST00000156838 - NO_TRANSLATION retained_intron ENSMUSG00000026213 Stk11ip ENSMUST00000129652 - NO_TRANSLATION retained_intron ENSMUSG00000026213 Stk11ip ENSMUST00000150560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026278 Bok ENSMUST00000185685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026278 Bok ENSMUST00000027499 ENSMUSP00000027499 TRANSLATION protein_coding - CCDS15193.1 1 213.0 0.0 3.65 31.6 86.0 1.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000026278 Bok ENSMUST00000188394 ENSMUSP00000140412 TRANSLATION protein_coding stop - 2 121.0 0.0 2.25 1.0 0.0 0.0 -4,-5 0.0027 4 -2.0 MINOR ENSMUSG00000026278 Bok ENSMUST00000200888 ENSMUSP00000144146 TRANSLATION protein_coding start - 3 132.0 0.0 1.9 0.0 69.6 0.0 -4,-7 0.0006 1 -2.0 MINOR ENSMUSG00000026278 Bok ENSMUST00000201863 ENSMUSP00000144347 TRANSLATION protein_coding - CCDS15193.1 5 213.0 0.0 3.65 31.6 86.0 1.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000026211 Obsl1 ENSMUST00000156499 - NO_TRANSLATION retained_intron ENSMUSG00000026211 Obsl1 ENSMUST00000156705 - NO_TRANSLATION retained_intron ENSMUSG00000026211 Obsl1 ENSMUST00000145382 - NO_TRANSLATION retained_intron ENSMUSG00000026211 Obsl1 ENSMUST00000113565 ENSMUSP00000109195 TRANSLATION protein_coding - CCDS78624.1 1 1025.0 0.0 7.2 4.8 292.6 0.0 -4,-2 0.4196 13 2.0 MINOR ENSMUSG00000026211 Obsl1 ENSMUST00000113567 ENSMUSP00000109197 TRANSLATION protein_coding - CCDS15077.2 1 1804.0 0.0 15.03 3.8 526.6 0.0 -4,-7 1.0 19 13.474 PRINCIPAL:1 ENSMUSG00000026211 Obsl1 ENSMUST00000155084 ENSMUSP00000114553 TRANSLATION protein_coding start - 2 1162.0 0.0 9.15 0.0 277.3 0.0 -4,-7 0.0077 9 -2.0 MINOR ENSMUSG00000026211 Obsl1 ENSMUST00000138352 - NO_TRANSLATION retained_intron ENSMUSG00000026211 Obsl1 ENSMUST00000132252 ENSMUSP00000117420 TRANSLATION protein_coding start/stop - 5 417.0 0.0 3.3 0.0 128.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026211 Obsl1 ENSMUST00000127507 - NO_TRANSLATION retained_intron ENSMUSG00000026211 Obsl1 ENSMUST00000154636 - NO_TRANSLATION retained_intron ENSMUSG00000026211 Obsl1 ENSMUST00000129403 - NO_TRANSLATION retained_intron ENSMUSG00000026211 Obsl1 ENSMUST00000150293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026211 Obsl1 ENSMUST00000145306 - NO_TRANSLATION retained_intron ENSMUSG00000026356 Dars ENSMUST00000027602 ENSMUSP00000027602 TRANSLATION protein_coding - CCDS15253.1 1 501.0 8.0 12.85 19.3 302.5 0.0 -4,-5 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000026356 Dars ENSMUST00000186398 - NO_TRANSLATION retained_intron ENSMUSG00000026356 Dars ENSMUST00000064309 ENSMUSP00000066866 TRANSLATION protein_coding - CCDS48348.1 1 87.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0118 3 0.0 MINOR ENSMUSG00000026546 Cfap45 ENSMUST00000161140 ENSMUSP00000125225 TRANSLATION protein_coding stop - 2 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026546 Cfap45 ENSMUST00000159395 ENSMUSP00000125224 TRANSLATION protein_coding stop - 3 161.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026546 Cfap45 ENSMUST00000085894 ENSMUSP00000083057 TRANSLATION protein_coding - CCDS48447.1 1 551.0 0.0 0.0 7.8 279.6 0.0 -4,-1 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000026546 Cfap45 ENSMUST00000159792 ENSMUSP00000124540 TRANSLATION protein_coding stop - 3 161.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026546 Cfap45 ENSMUST00000160531 - NO_TRANSLATION retained_intron ENSMUSG00000026546 Cfap45 ENSMUST00000162988 ENSMUSP00000124654 TRANSLATION protein_coding stop - 2 134.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026546 Cfap45 ENSMUST00000160303 ENSMUSP00000124646 TRANSLATION protein_coding stop - 3 64.0 0.0 0.0 0.0 37.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026546 Cfap45 ENSMUST00000194051 - NO_TRANSLATION retained_intron ENSMUSG00000067028 Cntnap5b ENSMUST00000086738 ENSMUSP00000083944 TRANSLATION protein_coding - CCDS35682.1 2 1292.0 0.0 7.188 0.8 386.9 1.0 2,-3 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000067028 Cntnap5b ENSMUST00000188735 ENSMUSP00000139877 TRANSLATION protein_coding start - 1 921.0 0.0 2.424 0.0 191.1 1.0 -4,-5 0.0098 2 -2.0 MINOR ENSMUSG00000067028 Cntnap5b ENSMUST00000185484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026173 Plcd4 ENSMUST00000027362 ENSMUSP00000027362 TRANSLATION protein_coding - CCDS35616.1 1 807.0 13.0 10.268 1.2 583.1 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:2 ENSMUSG00000026173 Plcd4 ENSMUST00000135111 - NO_TRANSLATION retained_intron ENSMUSG00000026173 Plcd4 ENSMUST00000067916 ENSMUSP00000064413 TRANSLATION protein_coding - - 5 775.0 13.0 10.268 1.2 583.1 0.0 -4,-5 0.2273 6 15.0 ALTERNATIVE:2 ENSMUSG00000026173 Plcd4 ENSMUST00000113747 ENSMUSP00000109376 TRANSLATION protein_coding - CCDS35617.1 1 775.0 13.0 10.268 1.2 583.1 0.0 -4,-5 0.3974 6 15.0 ALTERNATIVE:2 ENSMUSG00000026173 Plcd4 ENSMUST00000113750 ENSMUSP00000109379 TRANSLATION protein_coding - - 1 798.0 13.0 9.76175 0.0 582.6 0.0 -4,-5 0.1903 6 12.986 MINOR ENSMUSG00000026173 Plcd4 ENSMUST00000113745 - NO_TRANSLATION retained_intron ENSMUSG00000026173 Plcd4 ENSMUST00000189956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026173 Plcd4 ENSMUST00000185411 - NO_TRANSLATION retained_intron ENSMUSG00000026173 Plcd4 ENSMUST00000141412 ENSMUSP00000115322 TRANSLATION nonsense_mediated_decay - - 1 574.0 7.0 5.098 0.0 374.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026173 Plcd4 ENSMUST00000152707 ENSMUSP00000121732 TRANSLATION nonsense_mediated_decay - - 5 574.0 7.0 5.098 0.0 374.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053461 Hhipl2 ENSMUST00000193862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053461 Hhipl2 ENSMUST00000192527 ENSMUSP00000142121 TRANSLATION protein_coding - CCDS78765.1 1 497.0 0.0 7.0 0.0 0.0 0.0 -4,-6 0.0227 - 1.998 MINOR ENSMUSG00000053461 Hhipl2 ENSMUST00000195809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053461 Hhipl2 ENSMUST00000065900 ENSMUSP00000070719 TRANSLATION protein_coding - CCDS56664.1 5 717.0 0.0 9.0 0.0 45.0 0.0 -1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046643 Or10j3 ENSMUST00000057548 ENSMUSP00000053317 TRANSLATION protein_coding - CCDS15524.1 - 313.0 0.0 1.0 12.5 193.8 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046643 Or10j3 ENSMUST00000216603 ENSMUSP00000150815 TRANSLATION protein_coding - CCDS15524.1 5 313.0 0.0 1.0 12.5 193.8 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046643 Or10j3 ENSMUST00000215844 ENSMUSP00000149832 TRANSLATION protein_coding - CCDS15524.1 5 313.0 0.0 1.0 12.5 193.8 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026667 Uhmk1 ENSMUST00000027979 ENSMUSP00000027979 TRANSLATION protein_coding - CCDS15468.1 1 419.0 20.0 7.5 12.5 163.2 0.0 -4,-7 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000026667 Uhmk1 ENSMUST00000123399 ENSMUSP00000120787 TRANSLATION protein_coding - - 5 344.0 20.0 5.75 2.1 134.5 0.0 -4,-7 0.0348 2 13.068 MINOR ENSMUSG00000026667 Uhmk1 ENSMUST00000150821 ENSMUSP00000115622 TRANSLATION protein_coding - - 1 330.0 9.0 6.5 0.1 138.1 0.0 -4,-7 0.0008 3 8.496 MINOR ENSMUSG00000037375 Hhat ENSMUST00000154755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037375 Hhat ENSMUST00000192585 ENSMUSP00000141575 TRANSLATION non_stop_decay stop - 1 507.0 0.0 8.75 0.0 195.1 5.0 0,-4 0.1195 - -2.0 MINOR ENSMUSG00000037375 Hhat ENSMUST00000192946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037375 Hhat ENSMUST00000044190 ENSMUSP00000046686 TRANSLATION protein_coding - CCDS15628.1 1 499.0 0.0 9.5 5.1 195.1 5.0 0,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000037375 Hhat ENSMUST00000128619 ENSMUSP00000120479 TRANSLATION protein_coding - - 1 473.0 0.0 8.75 0.0 195.1 5.0 0,-4 0.0525 - 10.5 MINOR ENSMUSG00000037375 Hhat ENSMUST00000154203 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037375 Hhat ENSMUST00000123721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026495 Efcab2 ENSMUST00000027775 ENSMUSP00000027775 TRANSLATION protein_coding - CCDS15557.1 1 164.0 3.0 4.665 20.0 0.0 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000026495 Efcab2 ENSMUST00000192905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026495 Efcab2 ENSMUST00000194861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026414 Tnnt2 ENSMUST00000112087 ENSMUSP00000107717 TRANSLATION protein_coding - CCDS48377.1 5 301.0 0.0 3.9975 0.3 107.1 0.0 -4,-5 0.4783 10 7.0 ALTERNATIVE:2 ENSMUSG00000026414 Tnnt2 ENSMUST00000189826 ENSMUSP00000140807 TRANSLATION protein_coding stop - 5 206.0 0.0 1.8175 0.0 79.5 0.0 -4,-5 0.0015 5 -2.0 MINOR ENSMUSG00000026414 Tnnt2 ENSMUST00000189732 ENSMUSP00000139669 TRANSLATION protein_coding - CCDS48376.1 5 295.0 0.0 3.9975 0.0 107.1 0.0 -4,-5 0.3577 10 7.0 ALTERNATIVE:2 ENSMUSG00000026414 Tnnt2 ENSMUST00000178854 ENSMUSP00000136265 TRANSLATION protein_coding - CCDS48376.1 5 295.0 0.0 3.9975 0.0 107.1 0.0 -4,-5 0.3577 10 7.0 ALTERNATIVE:2 ENSMUSG00000026414 Tnnt2 ENSMUST00000190451 ENSMUSP00000140282 TRANSLATION protein_coding stop - 5 114.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026414 Tnnt2 ENSMUST00000027671 ENSMUSP00000027671 TRANSLATION protein_coding - CCDS48378.1 5 291.0 0.0 3.9975 0.0 107.1 0.0 -4,-5 0.2738 10 7.0 ALTERNATIVE:2 ENSMUSG00000026414 Tnnt2 ENSMUST00000188028 ENSMUSP00000140941 TRANSLATION protein_coding - CCDS48375.1 5 302.0 0.0 3.9975 0.0 109.7 0.0 -4,-5 1.0 10 8.0 PRINCIPAL:2 ENSMUSG00000026414 Tnnt2 ENSMUST00000186225 - NO_TRANSLATION retained_intron ENSMUSG00000026414 Tnnt2 ENSMUST00000188098 - NO_TRANSLATION retained_intron ENSMUSG00000026414 Tnnt2 ENSMUST00000191055 - NO_TRANSLATION retained_intron ENSMUSG00000026414 Tnnt2 ENSMUST00000179863 ENSMUSP00000137093 TRANSLATION protein_coding - CCDS48375.1 5 302.0 0.0 3.9975 0.0 109.7 0.0 -4,-5 1.0 10 8.0 PRINCIPAL:2 ENSMUSG00000026414 Tnnt2 ENSMUST00000189355 ENSMUSP00000139919 TRANSLATION protein_coding - CCDS48378.1 5 291.0 0.0 3.9975 0.0 107.1 0.0 -4,-5 0.2738 10 7.0 ALTERNATIVE:2 ENSMUSG00000026205 Slc23a3 ENSMUST00000027405 ENSMUSP00000027405 TRANSLATION protein_coding - CCDS15062.1 1 611.0 0.0 4.7 3.8 322.0 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026205 Slc23a3 ENSMUST00000188080 - NO_TRANSLATION retained_intron ENSMUSG00000026035 Ppil3 ENSMUST00000114348 ENSMUSP00000109988 TRANSLATION protein_coding - CCDS35579.1 1 161.0 9.0 4.58 36.9 175.4 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000026035 Ppil3 ENSMUST00000081677 ENSMUSP00000080378 TRANSLATION protein_coding - CCDS35579.1 1 161.0 9.0 4.58 36.9 175.4 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000026035 Ppil3 ENSMUST00000124550 - NO_TRANSLATION retained_intron ENSMUSG00000026035 Ppil3 ENSMUST00000190048 ENSMUSP00000139617 TRANSLATION protein_coding stop - 3 91.0 5.0 2.83 0.0 94.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026035 Ppil3 ENSMUST00000185990 ENSMUSP00000139979 TRANSLATION protein_coding stop - 3 90.0 5.0 2.83 0.0 92.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026035 Ppil3 ENSMUST00000186242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026035 Ppil3 ENSMUST00000117069 ENSMUSP00000112947 TRANSLATION protein_coding - CCDS35579.1 1 161.0 9.0 4.58 36.9 175.4 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000026035 Ppil3 ENSMUST00000188896 - NO_TRANSLATION retained_intron ENSMUSG00000026035 Ppil3 ENSMUST00000114345 ENSMUSP00000109984 TRANSLATION protein_coding - CCDS35580.1 1 120.0 9.0 3.58 0.0 146.4 0.0 -4,-5 0.0305 3 14.262 MINOR ENSMUSG00000051079 Rgs13 ENSMUST00000052375 ENSMUSP00000058813 TRANSLATION protein_coding - CCDS15348.1 1 158.0 0.0 2.75 6.6 117.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051079 Rgs13 ENSMUST00000111941 ENSMUSP00000107572 TRANSLATION protein_coding - CCDS15348.1 1 158.0 0.0 2.75 6.6 117.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000097918 Ascl5 ENSMUST00000180436 ENSMUSP00000137746 TRANSLATION protein_coding - CCDS59541.1 - 188.0 0.0 0.6 0.4 59.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026637 Traf5 ENSMUST00000194408 - NO_TRANSLATION retained_intron ENSMUSG00000026637 Traf5 ENSMUST00000193355 - NO_TRANSLATION retained_intron ENSMUSG00000026637 Traf5 ENSMUST00000195815 ENSMUSP00000141931 TRANSLATION protein_coding - - 5 558.0 12.0 4.6 14.8 90.5 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025979 Mob4 ENSMUST00000159311 ENSMUSP00000124790 TRANSLATION protein_coding - CCDS78585.1 3 204.0 4.0 5.496 6.9 115.8 0.0 -4,-7 0.2945 5 15.058 MINOR ENSMUSG00000025979 Mob4 ENSMUST00000162930 - NO_TRANSLATION retained_intron ENSMUSG00000025979 Mob4 ENSMUST00000187422 - NO_TRANSLATION retained_intron ENSMUSG00000025979 Mob4 ENSMUST00000161122 ENSMUSP00000124981 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 1.43 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025979 Mob4 ENSMUST00000159743 - NO_TRANSLATION retained_intron ENSMUSG00000025979 Mob4 ENSMUST00000162553 ENSMUSP00000124151 TRANSLATION protein_coding stop - 5 186.0 4.0 5.16 0.0 115.8 0.0 -4,-5 0.0025 5 -2.0 MINOR ENSMUSG00000025979 Mob4 ENSMUST00000027122 ENSMUSP00000027122 TRANSLATION protein_coding start - 3 183.0 4.0 4.996 0.0 83.7 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000025979 Mob4 ENSMUST00000162364 ENSMUSP00000125415 TRANSLATION protein_coding - CCDS14960.1 1 225.0 4.0 6.326 33.8 115.8 0.0 -4,-6 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000046101 Mcmdc2 ENSMUST00000171802 ENSMUSP00000128620 TRANSLATION protein_coding - CCDS48215.1 5 681.0 4.0 2.1385 14.4 30.6 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000046101 Mcmdc2 ENSMUST00000125294 ENSMUSP00000120858 TRANSLATION protein_coding - - 5 604.0 4.0 1.3385 0.0 0.0 0.0 -4,-5 0.0267 - 7.756 MINOR ENSMUSG00000046101 Mcmdc2 ENSMUST00000052843 ENSMUSP00000054715 TRANSLATION protein_coding - - 1 347.0 4.0 0.52 0.0 0.0 0.0 -4,-5 0.0 - 5.458 MINOR ENSMUSG00000046101 Mcmdc2 ENSMUST00000140948 ENSMUSP00000120577 TRANSLATION protein_coding - - 5 692.0 4.0 2.1385 0.0 30.6 0.0 -4,-5 0.1016 - 16.0 MINOR ENSMUSG00000046101 Mcmdc2 ENSMUST00000118098 ENSMUSP00000112851 TRANSLATION protein_coding - - 5 358.0 4.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - 5.122 MINOR ENSMUSG00000046101 Mcmdc2 ENSMUST00000183059 ENSMUSP00000138182 TRANSLATION nonsense_mediated_decay start - 2 25.0 0.0 0.1485 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015222 Map2 ENSMUST00000133522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015222 Map2 ENSMUST00000145419 ENSMUSP00000134538 TRANSLATION protein_coding stop - 1 608.0 0.0 0.0 0.0 690.5 0.0 -4,-5 0.0351 36 -2.0 MINOR ENSMUSG00000015222 Map2 ENSMUST00000239213 ENSMUSP00000159224 TRANSLATION protein_coding - - - 1989.0 0.0 3.19 0.0 2378.3 0.0 -4,-5 0.2941 84 5.802 MINOR ENSMUSG00000015222 Map2 ENSMUST00000024639 ENSMUSP00000024639 TRANSLATION protein_coding - CCDS35602.1 5 467.0 0.0 3.19 19.9 181.8 0.0 -4,-5 0.8438 20 9.318 MINOR ENSMUSG00000015222 Map2 ENSMUST00000114012 ENSMUSP00000109645 TRANSLATION protein_coding - - 1 466.0 0.0 3.19 17.7 181.8 0.0 -4,-5 0.711 20 8.862 MINOR ENSMUSG00000015222 Map2 ENSMUST00000151423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015222 Map2 ENSMUST00000114018 ENSMUSP00000109651 TRANSLATION protein_coding - CCDS15020.1 5 498.0 0.0 4.19 20.3 242.6 0.0 -4,-5 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000015222 Map2 ENSMUST00000173800 ENSMUSP00000134518 TRANSLATION protein_coding start/stop - 5 240.0 0.0 1.61 0.0 137.1 0.0 -4,-2 0.0 12 -2.0 MINOR ENSMUSG00000015222 Map2 ENSMUST00000141148 ENSMUSP00000117996 TRANSLATION protein_coding start/stop - 1 262.0 0.0 0.0 0.0 21.2 0.0 -4,-5 0.0 17 -2.0 MINOR ENSMUSG00000015222 Map2 ENSMUST00000172886 ENSMUSP00000133446 TRANSLATION protein_coding start/stop - 5 336.0 0.0 2.94 0.0 341.9 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000015222 Map2 ENSMUST00000172486 ENSMUSP00000134187 TRANSLATION protein_coding start - 5 131.0 0.0 1.49 0.0 53.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000015222 Map2 ENSMUST00000125844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015222 Map2 ENSMUST00000124873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015222 Map2 ENSMUST00000156636 ENSMUSP00000133871 TRANSLATION protein_coding stop - 2 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000015222 Map2 ENSMUST00000128673 - NO_TRANSLATION retained_intron ENSMUSG00000015222 Map2 ENSMUST00000114017 ENSMUSP00000109650 TRANSLATION protein_coding - CCDS15020.1 1 498.0 0.0 4.19 20.3 242.6 0.0 -4,-5 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000015222 Map2 ENSMUST00000077355 ENSMUSP00000076577 TRANSLATION protein_coding - CCDS35602.1 1 467.0 0.0 3.19 19.9 181.8 0.0 -4,-5 0.8438 20 9.318 MINOR ENSMUSG00000015222 Map2 ENSMUST00000114013 ENSMUSP00000109646 TRANSLATION protein_coding - CCDS83550.1 1 1828.0 0.0 3.19 0.4 2378.3 0.0 -4,-5 0.4124 82 5.802 MINOR ENSMUSG00000015222 Map2 ENSMUST00000127388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015222 Map2 ENSMUST00000114015 ENSMUSP00000109648 TRANSLATION protein_coding - CCDS35602.1 1 467.0 0.0 3.19 19.9 181.8 0.0 -4,-5 0.8438 20 9.318 MINOR ENSMUSG00000015222 Map2 ENSMUST00000173855 ENSMUSP00000134471 TRANSLATION protein_coding stop - 5 565.0 0.0 0.0 0.0 125.8 0.0 -4,-5 0.0034 33 -2.0 MINOR ENSMUSG00000015222 Map2 ENSMUST00000137807 - NO_TRANSLATION retained_intron ENSMUSG00000015222 Map2 ENSMUST00000174590 - NO_TRANSLATION retained_intron ENSMUSG00000015222 Map2 ENSMUST00000173778 ENSMUSP00000134651 TRANSLATION protein_coding start/stop - 5 381.0 0.0 2.94 0.0 446.0 0.0 -4,-5 0.0 16 -2.0 MINOR ENSMUSG00000015222 Map2 ENSMUST00000123647 ENSMUSP00000119341 TRANSLATION protein_coding stop - 3 139.0 0.0 0.0 0.0 21.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000026572 Tbx19 ENSMUST00000160350 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026572 Tbx19 ENSMUST00000161777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026572 Tbx19 ENSMUST00000027859 ENSMUSP00000027859 TRANSLATION protein_coding - CCDS15439.1 1 446.0 0.0 3.7 6.9 241.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026572 Tbx19 ENSMUST00000161144 ENSMUSP00000123909 TRANSLATION protein_coding start - 5 318.0 0.0 2.9 0.0 195.2 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000026383 Epb41l5 ENSMUST00000187194 ENSMUSP00000139683 TRANSLATION protein_coding stop - 5 114.0 0.0 1.5 0.0 57.3 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000026383 Epb41l5 ENSMUST00000027632 ENSMUSP00000027632 TRANSLATION protein_coding - CCDS48339.1 1 504.0 0.0 7.575 16.0 256.8 0.0 -4,0 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000026383 Epb41l5 ENSMUST00000187239 - NO_TRANSLATION retained_intron ENSMUSG00000026383 Epb41l5 ENSMUST00000191162 - NO_TRANSLATION retained_intron ENSMUSG00000026383 Epb41l5 ENSMUST00000052404 ENSMUSP00000058966 TRANSLATION protein_coding - CCDS15226.1 1 731.0 0.0 7.575 8.1 256.8 0.0 -4,0 0.6941 11 13.892 MINOR ENSMUSG00000026383 Epb41l5 ENSMUST00000185467 - NO_TRANSLATION retained_intron ENSMUSG00000026383 Epb41l5 ENSMUST00000163147 ENSMUSP00000128374 TRANSLATION protein_coding - - 1 739.0 0.0 7.575 1.9 256.8 0.0 -4,0 0.3097 10 12.24 MINOR ENSMUSG00000026383 Epb41l5 ENSMUST00000191046 ENSMUSP00000140227 TRANSLATION protein_coding - CCDS48339.1 1 504.0 0.0 7.575 16.0 256.8 0.0 -4,0 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000026383 Epb41l5 ENSMUST00000189042 - NO_TRANSLATION retained_intron ENSMUSG00000026617 Bpnt1 ENSMUST00000110965 ENSMUSP00000106590 TRANSLATION protein_coding - CCDS83658.1 1 253.0 11.0 6.33 1.0 173.5 0.0 -4,-5 0.0075 10 11.724 MINOR ENSMUSG00000026617 Bpnt1 ENSMUST00000151769 ENSMUSP00000117122 TRANSLATION protein_coding stop - 5 83.0 2.0 2.58 0.0 49.1 0.0 -3,-1 0.0 4 -2.0 MINOR ENSMUSG00000026617 Bpnt1 ENSMUST00000210277 ENSMUSP00000147674 TRANSLATION protein_coding - CCDS83657.1 5 323.0 12.0 8.03 11.0 207.6 0.0 -3,-1 0.4943 16 19.054 MINOR ENSMUSG00000026617 Bpnt1 ENSMUST00000027916 ENSMUSP00000027916 TRANSLATION protein_coding - CCDS15597.1 1 308.0 12.0 7.83 33.9 210.3 0.0 -3,-1 1.0 14 21.598 PRINCIPAL:1 ENSMUSG00000026617 Bpnt1 ENSMUST00000137757 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000113084 A030003K21Rik ENSMUST00000222600 ENSMUSP00000152055 TRANSLATION protein_coding - - - 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000046337 Fam178b ENSMUST00000193548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046337 Fam178b ENSMUST00000194839 ENSMUSP00000141644 TRANSLATION nonsense_mediated_decay start - 5 140.0 0.0 0.0 0.0 101.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000046337 Fam178b ENSMUST00000193155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046337 Fam178b ENSMUST00000114981 ENSMUSP00000124023 TRANSLATION protein_coding - CCDS14885.2 1 379.0 0.0 0.0 0.0 388.8 0.0 -4,-5 0.0689 - 3.894 MINOR ENSMUSG00000046337 Fam178b ENSMUST00000170295 ENSMUSP00000132846 TRANSLATION protein_coding - CCDS48241.1 5 523.0 0.0 0.0 0.0 423.9 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000046337 Fam178b ENSMUST00000193763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046337 Fam178b ENSMUST00000195729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046337 Fam178b ENSMUST00000194025 ENSMUSP00000141520 TRANSLATION nonsense_mediated_decay start - 5 98.0 0.0 0.0 0.0 91.3 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000040843 Tiprl ENSMUST00000043235 ENSMUSP00000037514 TRANSLATION protein_coding - CCDS15441.1 1 271.0 0.0 7.25 9.7 222.1 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000040843 Tiprl ENSMUST00000156102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040843 Tiprl ENSMUST00000142191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040843 Tiprl ENSMUST00000195248 ENSMUSP00000142327 TRANSLATION protein_coding stop - 3 47.0 0.0 1.5 0.0 43.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040843 Tiprl ENSMUST00000192436 ENSMUSP00000141708 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000040843 Tiprl ENSMUST00000192726 - NO_TRANSLATION retained_intron ENSMUSG00000026548 Slamf9 ENSMUST00000027830 ENSMUSP00000027830 TRANSLATION protein_coding - CCDS15514.1 1 285.0 0.0 1.1 0.4 40.5 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047539 Fbxo28 ENSMUST00000195061 ENSMUSP00000141772 TRANSLATION nonsense_mediated_decay start - 3 143.0 0.0 0.0 0.0 23.8 0.0 -4,-5 0.0213 1 -2.0 MINOR ENSMUSG00000047539 Fbxo28 ENSMUST00000194213 ENSMUSP00000141219 TRANSLATION nonsense_mediated_decay - - 3 195.0 0.0 0.0 0.0 23.8 0.0 -4,-5 0.0202 2 -2.0 MINOR ENSMUSG00000047539 Fbxo28 ENSMUST00000192544 ENSMUSP00000141838 TRANSLATION nonsense_mediated_decay - - 5 126.0 0.0 0.0 0.0 23.8 0.0 -4,-5 0.0641 1 -2.0 MINOR ENSMUSG00000047539 Fbxo28 ENSMUST00000193700 - NO_TRANSLATION retained_intron ENSMUSG00000047539 Fbxo28 ENSMUST00000051431 ENSMUSP00000054718 TRANSLATION protein_coding - CCDS15588.1 1 368.0 0.0 0.0 8.7 23.8 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000026413 Pkp1 ENSMUST00000132793 - NO_TRANSLATION retained_intron ENSMUSG00000026413 Pkp1 ENSMUST00000163260 ENSMUSP00000128418 TRANSLATION protein_coding - CCDS15322.1 1 728.0 0.0 7.496 11.4 60.3 0.0 -4,-5 1.0 28 15.0 PRINCIPAL:1 ENSMUSG00000026413 Pkp1 ENSMUST00000189805 ENSMUSP00000140883 TRANSLATION nonsense_mediated_decay - - 5 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026413 Pkp1 ENSMUST00000027667 ENSMUSP00000027667 TRANSLATION protein_coding - CCDS15322.1 1 728.0 0.0 7.496 11.4 60.3 0.0 -4,-5 1.0 28 15.0 PRINCIPAL:1 ENSMUSG00000042215 Bag2 ENSMUST00000189741 - NO_TRANSLATION retained_intron ENSMUSG00000042215 Bag2 ENSMUST00000044691 ENSMUSP00000042009 TRANSLATION protein_coding - CCDS14864.1 1 210.0 0.0 3.3 10.3 0.0 0.0 -4,-1 1.0 11 9.0 PRINCIPAL:1 ENSMUSG00000042215 Bag2 ENSMUST00000187602 ENSMUSP00000139538 TRANSLATION protein_coding - - 2 57.0 0.0 0.8 0.0 0.0 0.0 -4,-1 0.0153 1 1.002 MINOR ENSMUSG00000042215 Bag2 ENSMUST00000155484 - NO_TRANSLATION retained_intron ENSMUSG00000026417 Pigr ENSMUST00000027675 ENSMUSP00000027675 TRANSLATION protein_coding - CCDS15260.1 1 771.0 0.0 5.58 0.1 168.7 0.0 4,-1 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000026417 Pigr ENSMUST00000137782 ENSMUSP00000114334 TRANSLATION protein_coding stop - 3 200.0 0.0 2.0 0.0 56.6 0.0 4,-1 0.0 2 -2.0 MINOR ENSMUSG00000026417 Pigr ENSMUST00000133792 ENSMUSP00000121686 TRANSLATION protein_coding stop - 3 211.0 0.0 2.33 0.0 56.6 0.0 4,-1 0.0 2 -2.0 MINOR ENSMUSG00000026283 Ing5 ENSMUST00000190476 ENSMUSP00000140498 TRANSLATION protein_coding - - 1 213.0 8.0 4.18 8.6 68.5 0.0 -4,-5 0.1188 1 14.824 MINOR ENSMUSG00000026283 Ing5 ENSMUST00000188402 ENSMUSP00000140739 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 1.33 0.0 43.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026283 Ing5 ENSMUST00000027505 ENSMUSP00000027505 TRANSLATION protein_coding - CCDS35673.1 1 240.0 8.0 5.18 24.4 109.8 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000039372 Marchf4 ENSMUST00000047786 ENSMUSP00000042803 TRANSLATION protein_coding - CCDS15034.1 1 409.0 4.0 2.5 5.4 37.9 0.0 2,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000026199 Ankzf1 ENSMUST00000134378 - NO_TRANSLATION retained_intron ENSMUSG00000026199 Ankzf1 ENSMUST00000152233 ENSMUSP00000136163 TRANSLATION protein_coding - CCDS56632.1 1 748.0 8.0 0.96 0.0 20.6 0.0 -4,-7 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000026199 Ankzf1 ENSMUST00000127860 - NO_TRANSLATION retained_intron ENSMUSG00000026199 Ankzf1 ENSMUST00000134233 - NO_TRANSLATION retained_intron ENSMUSG00000026199 Ankzf1 ENSMUST00000145459 ENSMUSP00000135971 TRANSLATION nonsense_mediated_decay - - 1 287.0 4.0 0.0 0.0 0.0 0.0 -4,-7 0.004 3 -2.0 MINOR ENSMUSG00000026199 Ankzf1 ENSMUST00000151887 - NO_TRANSLATION retained_intron ENSMUSG00000026199 Ankzf1 ENSMUST00000131788 - NO_TRANSLATION retained_intron ENSMUSG00000063681 Crb1 ENSMUST00000059825 ENSMUSP00000060769 TRANSLATION protein_coding - CCDS15336.1 1 1405.0 47.0 5.27 4.2 543.3 0.0 -2,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000063681 Crb1 ENSMUST00000197035 ENSMUSP00000143386 TRANSLATION nonsense_mediated_decay start - 3 46.0 10.0 1.4389 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063681 Crb1 ENSMUST00000196402 ENSMUSP00000142702 TRANSLATION protein_coding - - 1 761.0 39.0 4.27 0.0 357.8 0.0 -2,-5 0.0044 - 4.668 MINOR ENSMUSG00000063681 Crb1 ENSMUST00000199291 - NO_TRANSLATION retained_intron ENSMUSG00000063681 Crb1 ENSMUST00000200340 ENSMUSP00000142909 TRANSLATION nonsense_mediated_decay start - 3 100.0 15.0 1.8 0.0 62.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063681 Crb1 ENSMUST00000199479 - NO_TRANSLATION retained_intron ENSMUSG00000063681 Crb1 ENSMUST00000198445 ENSMUSP00000142552 TRANSLATION protein_coding - - 1 1314.0 47.0 4.44 0.0 535.6 0.0 -2,-5 0.0958 - 15.876 MINOR ENSMUSG00000079588 Tmem182 ENSMUST00000114765 ENSMUSP00000110413 TRANSLATION protein_coding - CCDS35550.1 1 229.0 0.0 0.0 24.9 207.9 0.0 0,-4 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000026147 Col9a1 ENSMUST00000124600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026147 Col9a1 ENSMUST00000147902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026147 Col9a1 ENSMUST00000054588 ENSMUSP00000051579 TRANSLATION protein_coding - CCDS35527.1 1 921.0 0.0 14.93 11.7 179.1 0.0 2,-2 1.0 6 13.35 PRINCIPAL:1 ENSMUSG00000026147 Col9a1 ENSMUST00000088349 ENSMUSP00000085687 TRANSLATION protein_coding - CCDS69871.1 1 680.0 0.0 11.4975 6.0 206.6 0.0 4,-3 0.6446 1 7.401 MINOR ENSMUSG00000042501 Cpa6 ENSMUST00000153695 ENSMUSP00000118341 TRANSLATION nonsense_mediated_decay - - 1 76.0 0.0 0.45 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000042501 Cpa6 ENSMUST00000147575 - NO_TRANSLATION retained_intron ENSMUSG00000042501 Cpa6 ENSMUST00000140938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042501 Cpa6 ENSMUST00000035577 ENSMUSP00000035435 TRANSLATION protein_coding - CCDS14819.1 1 438.0 8.0 8.65 7.6 343.3 0.0 -1,-4 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000026247 Ecel1 ENSMUST00000159662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026247 Ecel1 ENSMUST00000161002 ENSMUSP00000125096 TRANSLATION protein_coding - CCDS15128.1 1 775.0 3.0 10.94 8.5 606.3 1.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000026247 Ecel1 ENSMUST00000160810 ENSMUSP00000125557 TRANSLATION protein_coding - CCDS15128.1 1 775.0 3.0 10.94 8.5 606.3 1.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000026247 Ecel1 ENSMUST00000027463 ENSMUSP00000027463 TRANSLATION protein_coding - CCDS15128.1 1 775.0 3.0 10.94 8.5 606.3 1.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000026247 Ecel1 ENSMUST00000162015 - NO_TRANSLATION retained_intron ENSMUSG00000063583 Or9s14 ENSMUST00000216553 ENSMUSP00000149607 TRANSLATION protein_coding - CCDS78650.1 5 322.0 0.0 1.0 0.4 167.9 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063583 Or9s14 ENSMUST00000217316 ENSMUSP00000149621 TRANSLATION protein_coding - CCDS78650.1 5 322.0 0.0 1.0 0.4 167.9 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063583 Or9s14 ENSMUST00000079790 ENSMUSP00000078720 TRANSLATION protein_coding stop - 5 323.0 0.0 1.0 0.4 167.9 6.0 -4,-6 0.2979 - -2.0 MINOR ENSMUSG00000036206 Sh3bp4 ENSMUST00000123745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036206 Sh3bp4 ENSMUST00000066279 ENSMUSP00000067581 TRANSLATION protein_coding - CCDS15147.1 1 962.0 0.0 0.0 19.6 118.0 0.0 -4,-7 1.0 22 10.0 PRINCIPAL:1 ENSMUSG00000051951 Xkr4 ENSMUST00000070533 ENSMUSP00000070648 TRANSLATION protein_coding - CCDS14803.1 1 647.0 0.0 0.0 5.1 418.4 0.0 -4,-5 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000051951 Xkr4 ENSMUST00000159265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051951 Xkr4 ENSMUST00000162897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040648 Ppip5k2 ENSMUST00000112845 ENSMUSP00000108466 TRANSLATION protein_coding - - 5 1242.0 23.0 7.75 8.0 460.4 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:3 ENSMUSG00000040648 Ppip5k2 ENSMUST00000042509 ENSMUSP00000043401 TRANSLATION protein_coding - CCDS35678.2 1 1129.0 23.0 7.75 1.1 460.4 0.0 -4,-5 0.4619 15 12.042 MINOR ENSMUSG00000040648 Ppip5k2 ENSMUST00000152788 - NO_TRANSLATION retained_intron ENSMUSG00000040648 Ppip5k2 ENSMUST00000191556 ENSMUSP00000139980 TRANSLATION protein_coding start - 5 92.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000040648 Ppip5k2 ENSMUST00000137758 - NO_TRANSLATION retained_intron ENSMUSG00000040648 Ppip5k2 ENSMUST00000189992 - NO_TRANSLATION retained_intron ENSMUSG00000040648 Ppip5k2 ENSMUST00000171129 ENSMUSP00000132889 TRANSLATION protein_coding - - 1 1123.0 23.0 7.75 6.9 460.4 0.0 -4,-5 0.8248 15 14.529 ALTERNATIVE:1 ENSMUSG00000026468 Lhx4 ENSMUST00000027740 ENSMUSP00000027740 TRANSLATION protein_coding - CCDS48399.1 1 390.0 16.0 4.725 23.9 190.8 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000026468 Lhx4 ENSMUST00000195275 ENSMUSP00000141662 TRANSLATION protein_coding stop - 5 223.0 10.0 3.35 0.0 136.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000037860 Aim2 ENSMUST00000192575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037860 Aim2 ENSMUST00000166137 ENSMUSP00000132253 TRANSLATION protein_coding - CCDS15529.2 5 354.0 0.0 4.16 0.4 276.1 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000037860 Aim2 ENSMUST00000173023 ENSMUSP00000134329 TRANSLATION protein_coding stop - 1 94.0 0.0 1.66 0.0 54.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037860 Aim2 ENSMUST00000174263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037860 Aim2 ENSMUST00000147604 ENSMUSP00000119465 TRANSLATION protein_coding - CCDS15529.2 5 354.0 0.0 4.16 0.4 276.1 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000037860 Aim2 ENSMUST00000151176 ENSMUSP00000121333 TRANSLATION protein_coding stop - 5 80.0 0.0 1.0 0.0 54.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037860 Aim2 ENSMUST00000135370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096968 Gm26620 ENSMUST00000180542 ENSMUSP00000137736 TRANSLATION protein_coding - - - 116.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.5862 - 0.0 PRINCIPAL:1 ENSMUSG00000026709 Dars2 ENSMUST00000160591 - NO_TRANSLATION retained_intron ENSMUSG00000026709 Dars2 ENSMUST00000035430 ENSMUSP00000041851 TRANSLATION protein_coding - CCDS15413.1 1 653.0 12.0 14.5 1.8 350.6 0.0 -4,0 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000026709 Dars2 ENSMUST00000162654 - NO_TRANSLATION retained_intron ENSMUSG00000026709 Dars2 ENSMUST00000159922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026709 Dars2 ENSMUST00000160759 - NO_TRANSLATION retained_intron ENSMUSG00000026709 Dars2 ENSMUST00000162398 - NO_TRANSLATION retained_intron ENSMUSG00000026709 Dars2 ENSMUST00000161748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042554 Zp3r ENSMUST00000142416 ENSMUSP00000118784 TRANSLATION protein_coding - - 5 514.0 0.0 5.2 0.1 215.5 0.0 0,-3 0.0387 7 7.704 MINOR ENSMUSG00000042554 Zp3r ENSMUST00000039862 ENSMUSP00000045443 TRANSLATION protein_coding - CCDS15257.1 1 579.0 0.0 6.2 0.4 253.8 0.0 0,-3 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000042554 Zp3r ENSMUST00000128128 ENSMUSP00000114401 TRANSLATION protein_coding - - 5 535.0 0.0 5.2 0.1 215.5 0.0 -3,1 0.0367 7 7.704 MINOR ENSMUSG00000070644 Etnk2 ENSMUST00000147909 - NO_TRANSLATION retained_intron ENSMUSG00000070644 Etnk2 ENSMUST00000156832 - NO_TRANSLATION retained_intron ENSMUSG00000070644 Etnk2 ENSMUST00000129213 ENSMUSP00000122244 TRANSLATION protein_coding - - 2 282.0 13.0 6.25 2.2 208.5 0.0 -4,-5 0.6642 1 15.07 MINOR ENSMUSG00000070644 Etnk2 ENSMUST00000135222 ENSMUSP00000114272 TRANSLATION protein_coding - CCDS15296.2 1 385.0 15.0 7.55 0.0 208.5 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000070644 Etnk2 ENSMUST00000131450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042641 Rgsl1 ENSMUST00000145308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042641 Rgsl1 ENSMUST00000185164 ENSMUSP00000139340 TRANSLATION nonsense_mediated_decay - - 5 970.0 0.0 0.0 0.0 39.4 0.0 -4,-7 0.1644 - -2.0 MINOR ENSMUSG00000042641 Rgsl1 ENSMUST00000134030 - NO_TRANSLATION retained_intron ENSMUSG00000042641 Rgsl1 ENSMUST00000206321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042641 Rgsl1 ENSMUST00000124558 ENSMUSP00000135642 TRANSLATION protein_coding - CCDS56645.1 5 1073.0 0.0 0.0 0.0 39.4 1.0 -4,-7 0.6386 - 2.0 ALTERNATIVE:2 ENSMUSG00000042641 Rgsl1 ENSMUST00000184095 ENSMUSP00000139096 TRANSLATION nonsense_mediated_decay start - 5 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042641 Rgsl1 ENSMUST00000238926 ENSMUSP00000159120 TRANSLATION protein_coding - - - 1108.0 0.0 0.0 0.0 39.4 1.0 -4,-7 0.8641 - 2.0 PRINCIPAL:4 ENSMUSG00000042641 Rgsl1 ENSMUST00000141249 ENSMUSP00000139215 TRANSLATION protein_coding - - 1 393.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0071 - 0.0 MINOR ENSMUSG00000040782 Cop1 ENSMUST00000192841 - NO_TRANSLATION retained_intron ENSMUSG00000040782 Cop1 ENSMUST00000193776 - NO_TRANSLATION retained_intron ENSMUSG00000040782 Cop1 ENSMUST00000195800 ENSMUSP00000141941 TRANSLATION nonsense_mediated_decay - - 3 159.0 5.0 0.83 0.0 31.8 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000040782 Cop1 ENSMUST00000195044 ENSMUSP00000141200 TRANSLATION protein_coding stop - 3 202.0 0.0 3.56 0.0 16.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040782 Cop1 ENSMUST00000076894 ENSMUSP00000076160 TRANSLATION protein_coding - CCDS35745.1 1 733.0 8.0 11.11 6.8 131.5 0.0 -3,1 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000040782 Cop1 ENSMUST00000194798 - NO_TRANSLATION retained_intron ENSMUSG00000040782 Cop1 ENSMUST00000192044 ENSMUSP00000141490 TRANSLATION protein_coding start/stop - 3 155.0 0.0 4.28 0.0 32.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040782 Cop1 ENSMUST00000192597 - NO_TRANSLATION retained_intron ENSMUSG00000040782 Cop1 ENSMUST00000192215 ENSMUSP00000141285 TRANSLATION protein_coding start/stop - 5 346.0 8.0 3.842 0.0 57.4 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000040782 Cop1 ENSMUST00000194713 - NO_TRANSLATION retained_intron ENSMUSG00000040782 Cop1 ENSMUST00000195554 ENSMUSP00000141561 TRANSLATION nonsense_mediated_decay start - 3 60.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000040782 Cop1 ENSMUST00000192762 ENSMUSP00000142031 TRANSLATION protein_coding start/stop - 5 227.0 0.0 2.622 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040782 Cop1 ENSMUST00000194049 - NO_TRANSLATION retained_intron ENSMUSG00000025774 Crisp4 ENSMUST00000115344 ENSMUSP00000111001 TRANSLATION protein_coding - CCDS83531.1 1 293.0 0.0 6.0 0.0 130.9 0.0 -4,-6 0.2009 - 8.0 ALTERNATIVE:2 ENSMUSG00000025774 Crisp4 ENSMUST00000115340 ENSMUSP00000110997 TRANSLATION protein_coding - - 1 250.0 0.0 6.0 3.8 130.9 0.0 3,-2 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000025774 Crisp4 ENSMUST00000026876 ENSMUSP00000026876 TRANSLATION protein_coding - CCDS83530.1 1 254.0 0.0 6.0 0.0 130.9 0.0 2,-3 0.4282 - 8.0 ALTERNATIVE:2 ENSMUSG00000025774 Crisp4 ENSMUST00000130669 - NO_TRANSLATION retained_intron ENSMUSG00000033159 Cnppd1 ENSMUST00000190679 ENSMUSP00000140289 TRANSLATION protein_coding - CCDS15063.1 1 407.0 0.0 1.76 0.0 0.0 1.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033159 Cnppd1 ENSMUST00000041213 ENSMUSP00000044799 TRANSLATION protein_coding - CCDS15063.1 1 407.0 0.0 1.76 0.0 0.0 1.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033159 Cnppd1 ENSMUST00000189043 - NO_TRANSLATION retained_intron ENSMUSG00000033159 Cnppd1 ENSMUST00000189403 ENSMUSP00000141062 TRANSLATION protein_coding stop - 2 170.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0049 - -2.0 MINOR ENSMUSG00000033159 Cnppd1 ENSMUST00000168720 ENSMUSP00000132688 TRANSLATION protein_coding - CCDS15063.1 1 407.0 0.0 1.76 0.0 0.0 1.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033159 Cnppd1 ENSMUST00000189809 ENSMUSP00000140262 TRANSLATION protein_coding stop - 3 114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0194 - -2.0 MINOR ENSMUSG00000033159 Cnppd1 ENSMUST00000187888 - NO_TRANSLATION retained_intron ENSMUSG00000033159 Cnppd1 ENSMUST00000188037 - NO_TRANSLATION retained_intron ENSMUSG00000016200 Syt14 ENSMUST00000215093 ENSMUSP00000151129 TRANSLATION protein_coding - - 5 838.0 0.0 2.4 1.4 68.3 0.0 -4,-6 0.2944 3 8.102 MINOR ENSMUSG00000016200 Syt14 ENSMUST00000195354 ENSMUSP00000142190 TRANSLATION protein_coding - CCDS48489.1 1 555.0 0.0 2.4 12.8 68.3 1.0 -4,-7 1.0 3 11.0 PRINCIPAL:1 ENSMUSG00000016200 Syt14 ENSMUST00000191907 - NO_TRANSLATION retained_intron ENSMUSG00000016200 Syt14 ENSMUST00000195530 ENSMUSP00000141563 TRANSLATION nonsense_mediated_decay - - 5 77.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0007 - -2.0 MINOR ENSMUSG00000016200 Syt14 ENSMUST00000016344 ENSMUSP00000016344 TRANSLATION protein_coding - CCDS78780.1 1 574.0 0.0 2.4 11.9 63.2 1.0 -4,-7 0.93 3 9.438 MINOR ENSMUSG00000026509 Capn2 ENSMUST00000068505 ENSMUSP00000068895 TRANSLATION protein_coding - CCDS35813.1 1 700.0 30.0 16.08 34.6 645.7 0.0 -4,-5 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000026509 Capn2 ENSMUST00000192483 - NO_TRANSLATION retained_intron ENSMUSG00000026509 Capn2 ENSMUST00000194940 - NO_TRANSLATION retained_intron ENSMUSG00000026509 Capn2 ENSMUST00000194961 - NO_TRANSLATION retained_intron ENSMUSG00000026509 Capn2 ENSMUST00000192230 - NO_TRANSLATION retained_intron ENSMUSG00000073494 Sh2d1b2 ENSMUST00000162752 ENSMUSP00000125121 TRANSLATION protein_coding - CCDS15469.1 1 132.0 0.0 3.25 7.4 57.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073494 Sh2d1b2 ENSMUST00000097470 ENSMUSP00000137939 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 1.1 0.0 40.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025980 Hspd1 ENSMUST00000027123 ENSMUSP00000027123 TRANSLATION protein_coding - CCDS35569.1 1 573.0 4.0 10.75 1.3 289.7 0.0 -4,0 1.0 38 17.0 PRINCIPAL:1 ENSMUSG00000025980 Hspd1 ENSMUST00000127861 ENSMUSP00000119336 TRANSLATION protein_coding stop - 2 202.0 3.0 3.75 0.0 131.7 0.0 -4,0 0.0 10 -2.0 MINOR ENSMUSG00000025980 Hspd1 ENSMUST00000144077 ENSMUSP00000122947 TRANSLATION protein_coding stop - 2 142.0 3.0 2.0 0.0 97.0 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000026222 Sp100 ENSMUST00000066427 ENSMUSP00000066399 TRANSLATION protein_coding - CCDS35639.1 1 591.0 0.0 6.38 0.0 253.8 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000026222 Sp100 ENSMUST00000140758 - NO_TRANSLATION retained_intron ENSMUSG00000026222 Sp100 ENSMUST00000150967 ENSMUSP00000122899 TRANSLATION protein_coding stop - 1 418.0 0.0 3.864 0.0 220.4 0.0 -4,-5 0.0167 7 -2.0 MINOR ENSMUSG00000026222 Sp100 ENSMUST00000141709 ENSMUSP00000119301 TRANSLATION protein_coding start/stop - 5 136.0 7.0 2.35 0.0 0.0 0.0 -4,-1 0.0015 - -2.0 MINOR ENSMUSG00000026222 Sp100 ENSMUST00000054279 ENSMUSP00000051705 TRANSLATION protein_coding - CCDS83567.1 1 348.0 0.0 2.0 0.0 129.5 0.0 -4,-5 0.0151 7 0.0 MINOR ENSMUSG00000026222 Sp100 ENSMUST00000147552 ENSMUSP00000116942 TRANSLATION protein_coding - CCDS83569.1 1 464.0 0.0 4.03 0.0 220.4 0.0 -4,-5 0.0492 8 5.298 MINOR ENSMUSG00000026222 Sp100 ENSMUST00000134283 - NO_TRANSLATION retained_intron ENSMUSG00000026222 Sp100 ENSMUST00000155094 ENSMUSP00000118481 TRANSLATION protein_coding - CCDS83568.1 1 482.0 0.0 4.03 0.0 220.4 0.0 -4,-5 0.0492 8 5.298 MINOR ENSMUSG00000026222 Sp100 ENSMUST00000145440 ENSMUSP00000120604 TRANSLATION nonsense_mediated_decay - - 2 304.0 0.0 2.0 0.0 129.5 0.0 -4,-5 0.0016 7 -2.0 MINOR ENSMUSG00000026222 Sp100 ENSMUST00000132641 ENSMUSP00000120267 TRANSLATION protein_coding start - 5 302.0 7.0 5.98 0.0 124.3 0.0 -4,-5 0.0067 2 -2.0 MINOR ENSMUSG00000026222 Sp100 ENSMUST00000153574 ENSMUSP00000122670 TRANSLATION protein_coding - - 5 494.0 0.0 4.63 0.0 220.4 0.0 -4,-5 0.0074 9 6.498 MINOR ENSMUSG00000026222 Sp100 ENSMUST00000129951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026222 Sp100 ENSMUST00000141998 - NO_TRANSLATION retained_intron ENSMUSG00000026361 Cdc73 ENSMUST00000188838 - NO_TRANSLATION retained_intron ENSMUSG00000026361 Cdc73 ENSMUST00000159794 ENSMUSP00000139872 TRANSLATION nonsense_mediated_decay start - 3 73.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0004 - -2.0 MINOR ENSMUSG00000026361 Cdc73 ENSMUST00000189597 - NO_TRANSLATION retained_intron ENSMUSG00000026361 Cdc73 ENSMUST00000018337 ENSMUSP00000018337 TRANSLATION protein_coding - CCDS15341.1 1 531.0 0.0 6.164 29.2 611.0 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000026361 Cdc73 ENSMUST00000212510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026361 Cdc73 ENSMUST00000162638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026416 Il20 ENSMUST00000027673 ENSMUSP00000027673 TRANSLATION protein_coding - CCDS15263.1 1 176.0 0.0 4.25 6.7 37.9 0.0 1,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026416 Il20 ENSMUST00000188581 ENSMUSP00000141088 TRANSLATION protein_coding - CCDS78673.1 1 154.0 0.0 3.5 0.3 26.8 0.0 1,-3 0.0233 - 8.742 MINOR ENSMUSG00000026058 Khdrbs2 ENSMUST00000189878 ENSMUSP00000141095 TRANSLATION protein_coding - - 1 91.0 0.0 1.6 0.0 101.5 0.0 -4,-5 0.0 1 1.2 MINOR ENSMUSG00000026058 Khdrbs2 ENSMUST00000027226 ENSMUSP00000027226 TRANSLATION protein_coding - CCDS14861.1 1 349.0 0.0 4.0 22.4 207.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000026058 Khdrbs2 ENSMUST00000185666 ENSMUSP00000140451 TRANSLATION protein_coding - - 2 92.0 0.0 1.6 0.0 101.5 0.0 -4,-5 0.0 1 1.2 MINOR ENSMUSG00000026058 Khdrbs2 ENSMUST00000188257 ENSMUSP00000140157 TRANSLATION protein_coding - - 1 193.0 0.0 2.6 0.0 134.4 0.0 -4,-5 0.0 1 4.806 MINOR ENSMUSG00000026058 Khdrbs2 ENSMUST00000186984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026014 Raph1 ENSMUST00000027168 ENSMUSP00000027168 TRANSLATION protein_coding - - 5 679.0 0.0 8.0 0.0 93.3 0.0 -4,-5 0.0504 13 8.0 MINOR ENSMUSG00000026014 Raph1 ENSMUST00000090293 ENSMUSP00000087763 TRANSLATION protein_coding - - 5 645.0 0.0 8.0 5.0 93.3 0.0 -4,-5 1.0 13 10.0 ALTERNATIVE:1 ENSMUSG00000026014 Raph1 ENSMUST00000182085 ENSMUSP00000138682 TRANSLATION protein_coding start - 3 216.0 0.0 3.75 0.0 34.2 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000026014 Raph1 ENSMUST00000142258 ENSMUSP00000120638 TRANSLATION protein_coding stop - 3 213.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 4 -2.0 MINOR ENSMUSG00000026014 Raph1 ENSMUST00000127573 - NO_TRANSLATION retained_intron ENSMUSG00000026014 Raph1 ENSMUST00000189383 - NO_TRANSLATION retained_intron ENSMUSG00000026014 Raph1 ENSMUST00000140485 ENSMUSP00000121023 TRANSLATION protein_coding - CCDS48275.2 5 1266.0 0.0 8.0 3.0 93.3 0.0 -4,-5 0.769 24 9.0 PRINCIPAL:3 ENSMUSG00000026014 Raph1 ENSMUST00000188511 - NO_TRANSLATION retained_intron ENSMUSG00000114943 Gm8947 ENSMUST00000224330 ENSMUSP00000153233 TRANSLATION protein_coding - - - 301.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6028 - 0.0 PRINCIPAL:1 ENSMUSG00000026135 Zfp142 ENSMUST00000136865 - NO_TRANSLATION retained_intron ENSMUSG00000026135 Zfp142 ENSMUST00000113737 ENSMUSP00000109366 TRANSLATION protein_coding - CCDS35618.1 1 1740.0 101.0 1.6 0.0 98.8 0.0 -4,-5 0.5332 - 15.336 MINOR ENSMUSG00000026135 Zfp142 ENSMUST00000156613 ENSMUSP00000138085 TRANSLATION nonsense_mediated_decay - - 5 219.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000026135 Zfp142 ENSMUST00000066986 ENSMUSP00000065149 TRANSLATION protein_coding - - 5 1642.0 93.0 1.6 0.3 98.8 0.0 -4,-5 0.3525 - 12.0 MINOR ENSMUSG00000026135 Zfp142 ENSMUST00000147011 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026135 Zfp142 ENSMUST00000127921 ENSMUSP00000137908 TRANSLATION nonsense_mediated_decay - - 1 132.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026135 Zfp142 ENSMUST00000027315 ENSMUSP00000027315 TRANSLATION protein_coding - CCDS78619.1 1 1843.0 105.0 1.6 0.0 98.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000026135 Zfp142 ENSMUST00000130112 - NO_TRANSLATION retained_intron ENSMUSG00000026479 Lamc2 ENSMUST00000185328 - NO_TRANSLATION retained_intron ENSMUSG00000026479 Lamc2 ENSMUST00000189005 - NO_TRANSLATION retained_intron ENSMUSG00000026479 Lamc2 ENSMUST00000027753 ENSMUSP00000027753 TRANSLATION protein_coding - CCDS15369.1 5 1193.0 4.0 5.6155 8.7 289.2 0.0 4,-1 1.0 28 19.0 PRINCIPAL:1 ENSMUSG00000026479 Lamc2 ENSMUST00000185356 ENSMUSP00000140514 TRANSLATION protein_coding - CCDS15369.1 1 1193.0 4.0 5.6155 8.7 289.2 0.0 4,-1 1.0 28 19.0 PRINCIPAL:1 ENSMUSG00000026479 Lamc2 ENSMUST00000188831 - NO_TRANSLATION retained_intron ENSMUSG00000026479 Lamc2 ENSMUST00000188206 ENSMUSP00000139416 TRANSLATION protein_coding start - - 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060771 Tsga10 ENSMUST00000155852 ENSMUSP00000141630 TRANSLATION protein_coding - - 1 212.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0326 2 0.0 MINOR ENSMUSG00000060771 Tsga10 ENSMUST00000088072 ENSMUSP00000085391 TRANSLATION protein_coding - CCDS69883.1 1 620.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.2815 11 0.0 MINOR ENSMUSG00000060771 Tsga10 ENSMUST00000114902 ENSMUSP00000110552 TRANSLATION protein_coding - CCDS78571.1 1 690.0 0.0 0.0 0.7 0.0 0.0 -4,-2 0.3573 12 0.0 MINOR ENSMUSG00000060771 Tsga10 ENSMUST00000041815 ENSMUSP00000048859 TRANSLATION protein_coding - CCDS14894.1 1 697.0 0.0 0.0 4.1 0.0 0.0 -4,-2 1.0 12 2.0 PRINCIPAL:1 ENSMUSG00000060771 Tsga10 ENSMUST00000134024 - NO_TRANSLATION retained_intron ENSMUSG00000060771 Tsga10 ENSMUST00000151735 ENSMUSP00000120554 TRANSLATION nonsense_mediated_decay - - 1 254.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0373 3 -2.0 MINOR ENSMUSG00000060771 Tsga10 ENSMUST00000123082 ENSMUSP00000141261 TRANSLATION protein_coding - - 1 412.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0292 5 0.0 MINOR ENSMUSG00000060771 Tsga10 ENSMUST00000193669 ENSMUSP00000142218 TRANSLATION protein_coding - - 1 212.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0326 2 0.0 MINOR ENSMUSG00000060771 Tsga10 ENSMUST00000239367 ENSMUSP00000159265 TRANSLATION protein_coding - - - 781.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0595 12 0.0 MINOR ENSMUSG00000081984 Dnajb3 ENSMUST00000119972 ENSMUSP00000112703 TRANSLATION protein_coding - CCDS15142.1 - 242.0 0.0 0.4 12.3 96.3 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000051251 Nhlh1 ENSMUST00000059794 ENSMUSP00000057489 TRANSLATION protein_coding - CCDS15506.1 1 133.0 0.0 1.0 21.8 65.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025952 Crygc ENSMUST00000114064 ENSMUSP00000109698 TRANSLATION protein_coding - CCDS35600.1 1 175.0 4.0 2.0 26.7 217.7 0.0 -4,-5 0.9831 7 16.0 ALTERNATIVE:1 ENSMUSG00000025952 Crygc ENSMUST00000027089 ENSMUSP00000027089 TRANSLATION protein_coding - CCDS15012.1 1 174.0 4.0 2.0 26.7 217.7 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:4 ENSMUSG00000073602 Serpinb3b ENSMUST00000166100 ENSMUSP00000132370 TRANSLATION protein_coding - CCDS15216.1 1 387.0 0.0 6.0 3.6 450.0 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000073602 Serpinb3b ENSMUST00000086694 ENSMUSP00000083901 TRANSLATION protein_coding - CCDS15216.1 1 387.0 0.0 6.0 3.6 450.0 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000064246 Chi3l1 ENSMUST00000153856 ENSMUSP00000117117 TRANSLATION protein_coding - - 1 381.0 0.0 8.5 10.0 303.5 0.0 4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000064246 Chi3l1 ENSMUST00000132873 ENSMUSP00000118289 TRANSLATION protein_coding stop - 5 110.0 0.0 2.75 0.0 89.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000064246 Chi3l1 ENSMUST00000133701 ENSMUSP00000121471 TRANSLATION protein_coding stop - 5 106.0 0.0 2.75 0.0 87.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000064246 Chi3l1 ENSMUST00000134812 - NO_TRANSLATION retained_intron ENSMUSG00000064246 Chi3l1 ENSMUST00000144819 - NO_TRANSLATION retained_intron ENSMUSG00000064246 Chi3l1 ENSMUST00000082060 ENSMUSP00000080717 TRANSLATION protein_coding - CCDS48368.1 1 389.0 0.0 8.5 2.6 303.5 0.0 3,-2 0.7264 6 12.534 MINOR ENSMUSG00000064246 Chi3l1 ENSMUST00000139254 - NO_TRANSLATION retained_intron ENSMUSG00000064246 Chi3l1 ENSMUST00000156873 ENSMUSP00000119205 TRANSLATION protein_coding - - 5 379.0 0.0 8.5 3.3 303.5 0.0 4,-1 0.4725 6 12.768 MINOR ENSMUSG00000101337 Dnah7c ENSMUST00000187094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101337 Dnah7c ENSMUST00000189339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101337 Dnah7c ENSMUST00000189749 ENSMUSP00000140430 TRANSLATION protein_coding - CCDS78579.1 5 4024.0 63.0 33.8985 8.3 2681.8 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000101337 Dnah7c ENSMUST00000178395 ENSMUSP00000136771 TRANSLATION protein_coding start/stop - 1 204.0 12.0 4.5 0.0 267.1 0.0 -4,-7 0.0007 - -2.0 MINOR ENSMUSG00000101337 Dnah7c ENSMUST00000191499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015962 1700016C15Rik ENSMUST00000016106 ENSMUSP00000016106 TRANSLATION protein_coding - CCDS48462.1 1 145.0 0.0 1.6 3.7 0.0 0.0 -4,-2 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000005886 Ncoa2 ENSMUST00000146784 - NO_TRANSLATION retained_intron ENSMUSG00000005886 Ncoa2 ENSMUST00000139970 - NO_TRANSLATION retained_intron ENSMUSG00000005886 Ncoa2 ENSMUST00000145280 ENSMUSP00000116641 TRANSLATION protein_coding stop - 3 114.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000005886 Ncoa2 ENSMUST00000133232 - NO_TRANSLATION retained_intron ENSMUSG00000005886 Ncoa2 ENSMUST00000068304 ENSMUSP00000069509 TRANSLATION protein_coding - CCDS35514.1 5 1393.0 0.0 4.36 10.3 618.1 0.0 -4,-5 0.8653 18 14.512 MINOR ENSMUSG00000005886 Ncoa2 ENSMUST00000185275 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005886 Ncoa2 ENSMUST00000143603 - NO_TRANSLATION retained_intron ENSMUSG00000005886 Ncoa2 ENSMUST00000081713 ENSMUSP00000080413 TRANSLATION protein_coding - CCDS35514.1 1 1393.0 0.0 4.36 10.3 618.1 0.0 -4,-5 0.8653 18 14.512 MINOR ENSMUSG00000005886 Ncoa2 ENSMUST00000147927 - NO_TRANSLATION retained_intron ENSMUSG00000005886 Ncoa2 ENSMUST00000006037 ENSMUSP00000006037 TRANSLATION protein_coding - CCDS35515.1 1 1462.0 0.0 4.36 15.8 618.1 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000005886 Ncoa2 ENSMUST00000124088 - NO_TRANSLATION retained_intron ENSMUSG00000100190 Krtap28-10 ENSMUST00000188323 ENSMUSP00000152836 TRANSLATION protein_coding - - - 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000073608 Gal3st2c ENSMUST00000097632 ENSMUSP00000095234 TRANSLATION protein_coding - CCDS48330.1 1 396.0 0.0 1.44 3.1 489.5 0.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000006403 Adamts4 ENSMUST00000111314 ENSMUSP00000106946 TRANSLATION protein_coding - - 1 648.0 18.0 8.0 0.0 199.7 0.0 -1,-4 0.0781 4 16.23 MINOR ENSMUSG00000006403 Adamts4 ENSMUST00000219033 ENSMUSP00000151387 TRANSLATION protein_coding - CCDS15485.1 1 845.0 18.0 8.0 1.8 229.2 0.0 -2,2 0.8097 6 18.47 MINOR ENSMUSG00000006403 Adamts4 ENSMUST00000111315 ENSMUSP00000106947 TRANSLATION protein_coding - - 1 833.0 18.0 8.0 4.4 229.2 0.0 -2,2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000051223 Bzw1 ENSMUST00000188630 ENSMUSP00000140898 TRANSLATION nonsense_mediated_decay - - 5 105.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051223 Bzw1 ENSMUST00000186949 ENSMUSP00000140319 TRANSLATION protein_coding - - 5 451.0 0.0 9.58 5.0 73.2 0.0 -4,0 0.3175 11 12.548 MINOR ENSMUSG00000051223 Bzw1 ENSMUST00000188898 ENSMUSP00000139761 TRANSLATION protein_coding stop - 5 253.0 0.0 6.25 0.0 0.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000051223 Bzw1 ENSMUST00000050552 ENSMUSP00000051935 TRANSLATION protein_coding - CCDS14971.1 1 419.0 0.0 9.58 30.2 73.2 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000090124 Ugt1a7c ENSMUST00000058237 ENSMUSP00000058683 TRANSLATION protein_coding - CCDS15139.1 1 531.0 19.0 6.75 6.2 773.2 1.0 2,-2 1.0 8 20.136 PRINCIPAL:1 ENSMUSG00000090124 Ugt1a7c ENSMUST00000150634 ENSMUSP00000123452 TRANSLATION protein_coding stop - 3 207.0 19.0 4.75 0.0 297.2 0.0 2,-2 0.0008 1 -2.0 MINOR ENSMUSG00000090124 Ugt1a7c ENSMUST00000113135 ENSMUSP00000108760 TRANSLATION protein_coding - CCDS48314.1 1 531.0 19.0 5.75 8.3 765.8 1.0 4,-1 0.9563 5 18.558 MINOR ENSMUSG00000090124 Ugt1a7c ENSMUST00000126203 ENSMUSP00000116653 TRANSLATION nonsense_mediated_decay - - 3 132.0 6.0 2.3 0.0 77.0 0.0 2,-2 0.0 1 -2.0 MINOR ENSMUSG00000098509 Rgs21 ENSMUST00000184008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000098509 Rgs21 ENSMUST00000184189 ENSMUSP00000139265 TRANSLATION protein_coding - CCDS69952.1 5 152.0 0.0 2.45 16.6 137.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000100846 Gm28845 ENSMUST00000144760 ENSMUSP00000159648 TRANSLATION protein_coding,RT start - 5 214.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.6028 - -2.0 PRINCIPAL:1 ENSMUSG00000025993 Slc40a1 ENSMUST00000186822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025993 Slc40a1 ENSMUST00000191247 - NO_TRANSLATION retained_intron ENSMUSG00000025993 Slc40a1 ENSMUST00000187406 ENSMUSP00000140734 TRANSLATION protein_coding stop - 1 70.0 0.0 1.75 0.0 69.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025993 Slc40a1 ENSMUST00000187420 ENSMUSP00000140549 TRANSLATION protein_coding stop - 1 70.0 0.0 1.75 0.0 69.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025993 Slc40a1 ENSMUST00000186804 ENSMUSP00000140969 TRANSLATION protein_coding stop - 1 70.0 0.0 1.75 0.0 69.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025993 Slc40a1 ENSMUST00000027137 ENSMUSP00000027137 TRANSLATION protein_coding - CCDS14933.1 1 570.0 0.0 6.14 9.2 634.1 2.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000025993 Slc40a1 ENSMUST00000186755 - NO_TRANSLATION retained_intron ENSMUSG00000025993 Slc40a1 ENSMUST00000188252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026285 Pdcd1 ENSMUST00000027507 ENSMUSP00000027507 TRANSLATION protein_coding - CCDS15200.1 1 288.0 0.0 1.0 5.1 62.5 0.0 1,-3 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000026497 Mixl1 ENSMUST00000027778 ENSMUSP00000027778 TRANSLATION protein_coding - CCDS15571.1 1 231.0 0.0 0.8 6.7 71.5 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026142 Rhbdd1 ENSMUST00000187475 - NO_TRANSLATION retained_intron ENSMUSG00000026142 Rhbdd1 ENSMUST00000027322 ENSMUSP00000027322 TRANSLATION protein_coding - CCDS15097.1 1 315.0 0.0 3.25 9.6 75.4 2.0 -1,-4 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026142 Rhbdd1 ENSMUST00000140020 ENSMUSP00000137770 TRANSLATION protein_coding - CCDS15097.1 1 315.0 0.0 3.25 9.6 75.4 2.0 -1,-4 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026640 Plxna2 ENSMUST00000135664 ENSMUSP00000118087 TRANSLATION nonsense_mediated_decay start - 5 83.0 0.0 1.0 0.0 29.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026640 Plxna2 ENSMUST00000125381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026640 Plxna2 ENSMUST00000027952 ENSMUSP00000027952 TRANSLATION protein_coding - CCDS35827.1 1 1894.0 0.0 25.444 9.2 1312.0 0.0 0,-3 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000026640 Plxna2 ENSMUST00000194398 - NO_TRANSLATION retained_intron ENSMUSG00000026640 Plxna2 ENSMUST00000124785 - NO_TRANSLATION retained_intron ENSMUSG00000026188 Tmem169 ENSMUST00000141783 ENSMUSP00000114990 TRANSLATION protein_coding stop - 3 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026188 Tmem169 ENSMUST00000027380 ENSMUSP00000027380 TRANSLATION protein_coding - CCDS15033.1 1 297.0 0.0 1.0 11.4 208.2 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000102752 Gm7694 ENSMUST00000179801 ENSMUSP00000136757 TRANSLATION protein_coding - CCDS56652.1 2 270.0 0.0 0.0 5.7 368.2 0.0 -4,-7 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000048174 Tmem81 ENSMUST00000188789 ENSMUSP00000139911 TRANSLATION protein_coding - CCDS15287.1 - 259.0 0.0 1.0 0.3 0.0 2.0 0,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048174 Tmem81 ENSMUST00000058167 ENSMUSP00000062565 TRANSLATION protein_coding - CCDS15287.1 1 259.0 0.0 1.0 0.3 0.0 2.0 0,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000118401 Gpr52 ENSMUST00000238289 ENSMUSP00000158769 TRANSLATION protein_coding - - - 361.0 0.0 1.0 27.2 134.3 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000033488 Cryzl2 ENSMUST00000046743 ENSMUSP00000044945 TRANSLATION protein_coding - CCDS15399.1 1 350.0 23.0 9.53 4.5 75.7 0.0 -4,-1 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000033488 Cryzl2 ENSMUST00000119891 ENSMUSP00000113664 TRANSLATION protein_coding - - 1 171.0 3.0 4.714 0.0 0.0 0.0 -4,-1 0.0 6 0.0 MINOR ENSMUSG00000033488 Cryzl2 ENSMUST00000194220 ENSMUSP00000142170 TRANSLATION nonsense_mediated_decay start - 1 72.0 6.0 1.83 0.0 29.7 0.0 -4,-7 0.0004 3 -2.0 MINOR ENSMUSG00000033488 Cryzl2 ENSMUST00000193791 ENSMUSP00000141717 TRANSLATION protein_coding - - 2 213.0 12.0 6.03 1.0 0.0 0.0 -4,-1 0.0327 7 0.0 MINOR ENSMUSG00000033488 Cryzl2 ENSMUST00000195702 ENSMUSP00000141761 TRANSLATION protein_coding start/stop - 3 142.0 9.0 3.25 0.0 0.0 0.0 3,-2 0.0028 2 -2.0 MINOR ENSMUSG00000026388 3110009E18Rik ENSMUST00000128578 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026388 3110009E18Rik ENSMUST00000112644 ENSMUSP00000108263 TRANSLATION protein_coding - CCDS15232.1 1 126.0 0.0 0.0 34.3 137.9 0.0 -4,-6 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000026388 3110009E18Rik ENSMUST00000187809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026388 3110009E18Rik ENSMUST00000153037 ENSMUSP00000115887 TRANSLATION protein_coding start - 3 138.0 0.0 0.0 0.0 40.8 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000026388 3110009E18Rik ENSMUST00000027637 ENSMUSP00000027637 TRANSLATION protein_coding - CCDS48342.1 1 121.0 0.0 0.0 0.3 72.1 0.0 -4,-6 0.054 - 2.052 MINOR ENSMUSG00000026388 3110009E18Rik ENSMUST00000056038 ENSMUSP00000053335 TRANSLATION protein_coding - CCDS48342.1 5 121.0 0.0 0.0 0.3 72.1 0.0 -4,-6 0.054 - 2.052 MINOR ENSMUSG00000041040 Fam117b ENSMUST00000151630 ENSMUSP00000138042 TRANSLATION nonsense_mediated_decay start - 2 84.0 0.0 0.0 0.0 68.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041040 Fam117b ENSMUST00000189790 - NO_TRANSLATION retained_intron ENSMUSG00000041040 Fam117b ENSMUST00000036540 ENSMUSP00000041671 TRANSLATION protein_coding - CCDS14986.1 1 584.0 0.0 0.0 1.1 406.9 0.0 -4,-2 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000004709 Cd244a ENSMUST00000194170 - NO_TRANSLATION retained_intron ENSMUSG00000004709 Cd244a ENSMUST00000004829 ENSMUSP00000004829 TRANSLATION protein_coding - CCDS35778.1 1 397.0 0.0 2.1 0.4 189.8 1.0 2,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000004709 Cd244a ENSMUST00000194797 ENSMUSP00000141898 TRANSLATION nonsense_mediated_decay - - 1 312.0 0.0 2.1 0.0 189.8 1.0 2,-2 0.1692 3 -2.0 MINOR ENSMUSG00000004709 Cd244a ENSMUST00000195804 - NO_TRANSLATION retained_intron ENSMUSG00000067158 Col4a4 ENSMUST00000135271 - NO_TRANSLATION retained_intron ENSMUSG00000067158 Col4a4 ENSMUST00000087050 ENSMUSP00000084282 TRANSLATION protein_coding - CCDS35630.1 1 1682.0 0.0 12.01 6.5 662.4 0.0 -2,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000058248 Kcnh1 ENSMUST00000110844 ENSMUSP00000106468 TRANSLATION protein_coding - CCDS35826.1 1 962.0 0.0 9.88 13.9 240.7 4.0 -4,-2 1.0 9 15.784 PRINCIPAL:1 ENSMUSG00000058248 Kcnh1 ENSMUST00000151152 ENSMUSP00000141247 TRANSLATION protein_coding start - 3 98.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000058248 Kcnh1 ENSMUST00000078470 ENSMUSP00000077563 TRANSLATION protein_coding - CCDS15627.1 1 989.0 0.0 9.88 7.7 244.3 4.0 -4,-2 0.833 10 14.076 MINOR ENSMUSG00000047330 Kcne4 ENSMUST00000187432 ENSMUSP00000140235 TRANSLATION protein_coding - - 5 64.0 0.0 0.8 0.0 32.8 1.0 -4,-6 0.0255 - 11.856 MINOR ENSMUSG00000047330 Kcne4 ENSMUST00000057262 ENSMUSP00000055415 TRANSLATION protein_coding - CCDS15088.1 1 170.0 0.0 0.8 9.5 33.6 1.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028033 Kcnq5 ENSMUST00000115299 - NO_TRANSLATION retained_intron ENSMUSG00000028033 Kcnq5 ENSMUST00000029667 ENSMUSP00000029667 TRANSLATION protein_coding - CCDS35525.1 1 933.0 0.0 9.528 5.1 399.9 6.0 -4,-5 1.0 11 9.462 PRINCIPAL:4 ENSMUSG00000028033 Kcnq5 ENSMUST00000115300 ENSMUSP00000110955 TRANSLATION protein_coding - CCDS48230.1 1 952.0 0.0 9.728 1.1 399.9 6.0 -4,-5 0.4971 11 8.046 MINOR ENSMUSG00000028033 Kcnq5 ENSMUST00000134505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028033 Kcnq5 ENSMUST00000173404 ENSMUSP00000134076 TRANSLATION protein_coding - CCDS78554.1 5 924.0 0.0 9.33 5.4 399.9 6.0 -4,-5 0.9469 11 9.202 ALTERNATIVE:1 ENSMUSG00000028033 Kcnq5 ENSMUST00000173058 ENSMUSP00000134166 TRANSLATION protein_coding - - 5 823.0 0.0 9.028 1.0 288.7 6.0 -4,-5 0.0355 10 4.602 MINOR ENSMUSG00000028033 Kcnq5 ENSMUST00000174183 ENSMUSP00000134389 TRANSLATION nonsense_mediated_decay - - 5 172.0 0.0 1.2 0.0 0.0 1.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026604 Ptpn14 ENSMUST00000027898 ENSMUSP00000027898 TRANSLATION protein_coding - - 1 849.0 11.0 5.0 0.0 424.9 0.0 -4,0 0.0871 3 18.0 MINOR ENSMUSG00000026604 Ptpn14 ENSMUST00000148129 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026604 Ptpn14 ENSMUST00000194127 - NO_TRANSLATION retained_intron ENSMUSG00000026604 Ptpn14 ENSMUST00000195038 - NO_TRANSLATION retained_intron ENSMUSG00000026604 Ptpn14 ENSMUST00000097442 ENSMUSP00000095051 TRANSLATION protein_coding - CCDS15609.1 5 1189.0 11.0 5.0 9.4 424.9 0.0 -4,0 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000026604 Ptpn14 ENSMUST00000128275 - NO_TRANSLATION retained_intron ENSMUSG00000050229 Pigm ENSMUST00000052455 ENSMUSP00000052838 TRANSLATION protein_coding - CCDS15513.1 - 423.0 0.0 1.0 8.7 365.8 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000089844 Sp140l1 ENSMUST00000161724 ENSMUSP00000123750 TRANSLATION protein_coding - - 5 215.0 0.0 2.0 0.0 129.5 0.0 -4,-5 0.0947 - 8.0 ALTERNATIVE:2 ENSMUSG00000089844 Sp140l1 ENSMUST00000161675 ENSMUSP00000123812 TRANSLATION protein_coding stop - 5 122.0 0.0 2.0 0.0 129.5 0.0 -4,-5 0.0221 - -2.0 MINOR ENSMUSG00000089844 Sp140l1 ENSMUST00000160792 ENSMUSP00000125122 TRANSLATION protein_coding - CCDS15107.1 1 211.0 0.0 2.0 0.0 129.5 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000078185 Chml ENSMUST00000209720 ENSMUSP00000148253 TRANSLATION protein_coding - - 5 156.0 0.0 1.2 0.0 39.7 2.0 -4,-5 0.0018 - 2.88 MINOR ENSMUSG00000078185 Chml ENSMUST00000211207 ENSMUSP00000147889 TRANSLATION protein_coding - CCDS35796.1 - 621.0 0.0 2.5 0.4 198.7 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000078185 Chml ENSMUST00000210367 ENSMUSP00000147761 TRANSLATION protein_coding - - 5 278.0 0.0 1.0 0.0 79.6 0.0 -4,-5 0.0 6 2.4 MINOR ENSMUSG00000078185 Chml ENSMUST00000211489 ENSMUSP00000147362 TRANSLATION protein_coding stop - 3 160.0 0.0 2.0 0.0 39.0 2.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000078185 Chml ENSMUST00000104984 ENSMUSP00000100600 TRANSLATION protein_coding - CCDS35796.1 5 621.0 0.0 2.5 0.4 198.7 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000034292 Traf3ip1 ENSMUST00000189341 ENSMUSP00000140151 TRANSLATION protein_coding - - 5 654.0 0.0 3.25 0.1 675.1 0.0 -4,-2 0.1463 5 11.886 MINOR ENSMUSG00000034292 Traf3ip1 ENSMUST00000047242 ENSMUSP00000042391 TRANSLATION protein_coding - CCDS35664.1 1 625.0 0.0 3.25 2.6 677.0 0.0 -4,-2 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000034292 Traf3ip1 ENSMUST00000187588 - NO_TRANSLATION retained_intron ENSMUSG00000041439 Mfsd6 ENSMUST00000147421 - NO_TRANSLATION retained_intron ENSMUSG00000041439 Mfsd6 ENSMUST00000087701 ENSMUSP00000084991 TRANSLATION protein_coding - CCDS14946.1 1 775.0 0.0 0.0 0.0 308.2 13.0 -4,-5 0.378 4 0.0 ALTERNATIVE:2 ENSMUSG00000041439 Mfsd6 ENSMUST00000188126 - NO_TRANSLATION retained_intron ENSMUSG00000041439 Mfsd6 ENSMUST00000147758 ENSMUSP00000115398 TRANSLATION protein_coding start - 5 569.0 0.0 0.0 0.0 231.7 10.0 -4,-7 0.0085 3 -2.0 MINOR ENSMUSG00000041439 Mfsd6 ENSMUST00000156876 ENSMUSP00000122881 TRANSLATION protein_coding - CCDS14945.2 5 794.0 0.0 0.0 2.4 308.2 13.0 -4,-5 1.0 7 1.0 PRINCIPAL:2 ENSMUSG00000041439 Mfsd6 ENSMUST00000149887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026196 Bard1 ENSMUST00000027393 ENSMUSP00000027393 TRANSLATION protein_coding - CCDS15029.1 1 765.0 0.0 9.05 0.4 215.9 0.0 -4,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000025921 Rdh10 ENSMUST00000027053 ENSMUSP00000027053 TRANSLATION protein_coding - CCDS14830.1 1 341.0 27.0 4.7 30.2 122.0 0.0 1,-3 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000025921 Rdh10 ENSMUST00000152626 - NO_TRANSLATION retained_intron ENSMUSG00000070532 Ccdc190 ENSMUST00000094348 ENSMUSP00000091908 TRANSLATION protein_coding - CCDS15466.1 1 288.0 0.0 0.0 0.4 424.8 0.0 -4,-2 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000070532 Ccdc190 ENSMUST00000175731 ENSMUSP00000135819 TRANSLATION protein_coding - CCDS83630.1 1 289.0 0.0 0.0 0.4 423.2 0.0 -4,-2 0.4761 - 2.0 ALTERNATIVE:2 ENSMUSG00000037872 Ackr1 ENSMUST00000194046 ENSMUSP00000141765 TRANSLATION protein_coding - - 1 174.0 0.0 0.2 0.0 0.0 2.0 -4,-6 0.0133 - 1.29 MINOR ENSMUSG00000037872 Ackr1 ENSMUST00000194298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037872 Ackr1 ENSMUST00000038227 ENSMUSP00000045134 TRANSLATION protein_coding - CCDS35789.1 1 334.0 0.0 0.931 5.7 0.0 7.0 -4,-6 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000073481 Mtarc2 ENSMUST00000160982 - NO_TRANSLATION retained_intron ENSMUSG00000073481 Mtarc2 ENSMUST00000162501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073481 Mtarc2 ENSMUST00000161821 ENSMUSP00000125374 TRANSLATION protein_coding stop - 3 190.0 0.0 4.08 0.0 154.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000073481 Mtarc2 ENSMUST00000160318 - NO_TRANSLATION retained_intron ENSMUSG00000073481 Mtarc2 ENSMUST00000161341 - NO_TRANSLATION retained_intron ENSMUSG00000073481 Mtarc2 ENSMUST00000068725 ENSMUSP00000066715 TRANSLATION protein_coding - CCDS15594.1 1 338.0 0.0 6.38 4.8 253.7 0.0 -2,0 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000073481 Mtarc2 ENSMUST00000162261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073481 Mtarc2 ENSMUST00000159293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073481 Mtarc2 ENSMUST00000161359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073481 Mtarc2 ENSMUST00000162866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042046 Dstyk ENSMUST00000045110 ENSMUSP00000035358 TRANSLATION protein_coding - CCDS15285.1 1 927.0 21.0 3.15 8.1 123.3 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000042046 Dstyk ENSMUST00000188389 ENSMUSP00000139652 TRANSLATION protein_coding - - 5 882.0 21.0 2.75 2.0 94.3 0.0 -4,-5 0.0962 10 15.885 MINOR ENSMUSG00000042046 Dstyk ENSMUST00000188006 - NO_TRANSLATION retained_intron ENSMUSG00000042046 Dstyk ENSMUST00000187092 ENSMUSP00000140376 TRANSLATION protein_coding start/stop - 3 215.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000042046 Dstyk ENSMUST00000188973 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042046 Dstyk ENSMUST00000191494 - NO_TRANSLATION retained_intron ENSMUSG00000025997 Ikzf2 ENSMUST00000191262 ENSMUSP00000139530 TRANSLATION protein_coding - - 5 381.0 10.0 1.5 0.0 18.7 0.0 -4,-5 0.0009 3 2.13 MINOR ENSMUSG00000025997 Ikzf2 ENSMUST00000188110 ENSMUSP00000140069 TRANSLATION protein_coding - - 5 454.0 14.0 2.018 0.0 40.0 0.0 -4,-5 0.0047 4 4.502 MINOR ENSMUSG00000025997 Ikzf2 ENSMUST00000187184 ENSMUSP00000141075 TRANSLATION protein_coding - - 5 500.0 18.0 3.018 7.9 58.7 0.0 -4,-5 0.6544 4 11.636 MINOR ENSMUSG00000025997 Ikzf2 ENSMUST00000187870 - NO_TRANSLATION retained_intron ENSMUSG00000025997 Ikzf2 ENSMUST00000190771 ENSMUSP00000139543 TRANSLATION protein_coding - - 5 532.0 22.0 3.768 11.5 58.7 0.0 -4,-5 0.8226 4 16.739 ALTERNATIVE:1 ENSMUSG00000025997 Ikzf2 ENSMUST00000190855 ENSMUSP00000140043 TRANSLATION protein_coding - - 5 452.0 18.0 2.518 1.0 58.7 0.0 -4,-5 0.1117 4 8.834 MINOR ENSMUSG00000025997 Ikzf2 ENSMUST00000188919 - NO_TRANSLATION retained_intron ENSMUSG00000025997 Ikzf2 ENSMUST00000027146 ENSMUSP00000027146 TRANSLATION protein_coding - CCDS15026.1 1 526.0 22.0 3.768 12.5 58.7 0.0 -4,-5 1.0 4 17.0 PRINCIPAL:4 ENSMUSG00000025997 Ikzf2 ENSMUST00000190016 ENSMUSP00000140378 TRANSLATION protein_coding stop - 3 99.0 0.0 0.32 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048126 Col6a3 ENSMUST00000130846 ENSMUSP00000115210 TRANSLATION protein_coding stop - 1 1703.0 7.0 4.912 0.0 1091.7 0.0 4,-1 0.1431 64 -2.0 MINOR ENSMUSG00000048126 Col6a3 ENSMUST00000136916 - NO_TRANSLATION retained_intron ENSMUSG00000048126 Col6a3 ENSMUST00000145750 - NO_TRANSLATION retained_intron ENSMUSG00000048126 Col6a3 ENSMUST00000056925 ENSMUSP00000057131 TRANSLATION protein_coding stop - 5 3284.0 7.0 7.012 0.0 1469.2 0.0 4,-1 0.6807 113 -2.0 MINOR ENSMUSG00000048126 Col6a3 ENSMUST00000188587 ENSMUSP00000140858 TRANSLATION protein_coding stop - 5 2677.0 3.0 5.332 0.0 1058.2 0.0 4,-1 0.5768 106 -2.0 MINOR ENSMUSG00000048126 Col6a3 ENSMUST00000150769 - NO_TRANSLATION retained_intron ENSMUSG00000048126 Col6a3 ENSMUST00000097653 ENSMUSP00000137585 TRANSLATION protein_coding - CCDS56640.1 5 2677.0 3.0 5.332 0.0 1058.2 0.0 4,-1 0.752 106 5.214 PRINCIPAL:1 ENSMUSG00000048126 Col6a3 ENSMUST00000187753 ENSMUSP00000140280 TRANSLATION protein_coding stop - 2 74.0 0.0 0.8 0.0 32.2 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000018189 Uchl5 ENSMUST00000190258 - NO_TRANSLATION retained_intron ENSMUSG00000018189 Uchl5 ENSMUST00000185742 - NO_TRANSLATION retained_intron ENSMUSG00000018189 Uchl5 ENSMUST00000185493 ENSMUSP00000139668 TRANSLATION protein_coding stop - 3 225.0 2.0 6.1125 0.0 100.9 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000018189 Uchl5 ENSMUST00000189433 - NO_TRANSLATION retained_intron ENSMUSG00000018189 Uchl5 ENSMUST00000018333 ENSMUSP00000018333 TRANSLATION protein_coding - CCDS78699.1 1 328.0 6.0 9.45 29.8 241.8 0.0 -4,-5 0.9963 13 18.0 ALTERNATIVE:1 ENSMUSG00000018189 Uchl5 ENSMUST00000189936 ENSMUSP00000140106 TRANSLATION protein_coding - CCDS15346.1 1 329.0 6.0 9.45 29.8 241.8 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:4 ENSMUSG00000018189 Uchl5 ENSMUST00000185539 ENSMUSP00000140681 TRANSLATION nonsense_mediated_decay start - 3 167.0 2.0 4.4 0.0 66.9 0.0 -4,-5 0.0003 6 -2.0 MINOR ENSMUSG00000018189 Uchl5 ENSMUST00000191512 - NO_TRANSLATION retained_intron ENSMUSG00000038608 Dock10 ENSMUST00000189486 ENSMUSP00000140868 TRANSLATION protein_coding start - 5 564.0 0.0 8.5 0.0 591.5 0.0 -4,-6 0.0051 7 -2.0 MINOR ENSMUSG00000038608 Dock10 ENSMUST00000191505 - NO_TRANSLATION retained_intron ENSMUSG00000038608 Dock10 ENSMUST00000187774 ENSMUSP00000140085 TRANSLATION protein_coding - CCDS78626.1 1 2175.0 9.0 12.254 7.8 1068.0 0.0 -4,-7 1.0 37 16.0 PRINCIPAL:4 ENSMUSG00000038608 Dock10 ENSMUST00000186087 ENSMUSP00000140102 TRANSLATION protein_coding stop - 5 546.0 9.0 2.28 0.0 169.4 0.0 -3,-1 0.0014 11 -2.0 MINOR ENSMUSG00000038608 Dock10 ENSMUST00000190983 ENSMUSP00000140719 TRANSLATION protein_coding - - 1 2151.0 9.0 12.254 0.3 1068.0 0.0 -4,-7 0.3805 37 14.0 MINOR ENSMUSG00000038608 Dock10 ENSMUST00000187885 - NO_TRANSLATION retained_intron ENSMUSG00000038608 Dock10 ENSMUST00000077946 ENSMUSP00000077099 TRANSLATION protein_coding - CCDS48297.1 5 2187.0 9.0 12.254 6.3 1068.0 0.0 -4,0 0.9033 37 15.558 ALTERNATIVE:1 ENSMUSG00000038608 Dock10 ENSMUST00000187698 - NO_TRANSLATION retained_intron ENSMUSG00000038608 Dock10 ENSMUST00000190595 ENSMUSP00000139567 TRANSLATION protein_coding start - 5 1816.0 0.0 10.974 0.0 895.5 0.0 -4,-6 0.0801 30 -2.0 MINOR ENSMUSG00000038608 Dock10 ENSMUST00000191449 ENSMUSP00000140513 TRANSLATION protein_coding stop - 1 373.0 9.0 2.28 0.0 169.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000038608 Dock10 ENSMUST00000186835 - NO_TRANSLATION retained_intron ENSMUSG00000096141 Dnah7a ENSMUST00000189677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096141 Dnah7a ENSMUST00000094964 ENSMUSP00000092571 TRANSLATION protein_coding - CCDS56629.1 5 4024.0 63.0 33.084 8.3 2671.4 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000037942 Crp ENSMUST00000194251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037942 Crp ENSMUST00000038495 ENSMUSP00000044665 TRANSLATION protein_coding - CCDS35787.1 2 225.0 0.0 1.0 9.5 319.2 0.0 4,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000007122 Casq1 ENSMUST00000170700 ENSMUSP00000129647 TRANSLATION protein_coding stop - 5 156.0 0.0 2.75 0.0 131.7 0.0 1,-2 0.0019 5 -2.0 MINOR ENSMUSG00000007122 Casq1 ENSMUST00000170638 - NO_TRANSLATION retained_intron ENSMUSG00000007122 Casq1 ENSMUST00000003554 ENSMUSP00000003554 TRANSLATION protein_coding - CCDS35781.2 1 405.0 0.0 9.25 0.1 779.3 0.0 1,-3 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000026554 Dcaf8 ENSMUST00000192704 ENSMUSP00000141732 TRANSLATION protein_coding - CCDS15509.1 1 591.0 0.0 9.51 9.3 62.2 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000026554 Dcaf8 ENSMUST00000194972 - NO_TRANSLATION retained_intron ENSMUSG00000026554 Dcaf8 ENSMUST00000191689 ENSMUSP00000141731 TRANSLATION protein_coding - CCDS15509.1 1 591.0 0.0 9.51 9.3 62.2 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000026554 Dcaf8 ENSMUST00000195394 - NO_TRANSLATION retained_intron ENSMUSG00000026554 Dcaf8 ENSMUST00000191891 ENSMUSP00000141751 TRANSLATION protein_coding start - 3 153.0 0.0 3.55 0.0 35.5 0.0 -4,-6 0.0012 3 -2.0 MINOR ENSMUSG00000026554 Dcaf8 ENSMUST00000074144 ENSMUSP00000073778 TRANSLATION protein_coding - CCDS15509.1 1 591.0 0.0 9.51 9.3 62.2 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000026554 Dcaf8 ENSMUST00000192031 - NO_TRANSLATION retained_intron ENSMUSG00000026554 Dcaf8 ENSMUST00000192428 - NO_TRANSLATION retained_intron ENSMUSG00000026554 Dcaf8 ENSMUST00000195345 ENSMUSP00000141842 TRANSLATION nonsense_mediated_decay start - 5 138.0 0.0 3.179 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026554 Dcaf8 ENSMUST00000195011 - NO_TRANSLATION retained_intron ENSMUSG00000026554 Dcaf8 ENSMUST00000193638 ENSMUSP00000141836 TRANSLATION nonsense_mediated_decay - - 1 411.0 0.0 4.979 0.0 29.5 0.0 -4,-5 0.0009 9 -2.0 MINOR ENSMUSG00000039210 Gpatch2 ENSMUST00000160471 ENSMUSP00000124407 TRANSLATION protein_coding - - 1 504.0 0.0 0.0 3.3 61.9 0.0 -4,-5 0.2276 7 6.768 MINOR ENSMUSG00000039210 Gpatch2 ENSMUST00000159748 ENSMUSP00000137858 TRANSLATION nonsense_mediated_decay - - 5 300.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0021 5 -2.0 MINOR ENSMUSG00000039210 Gpatch2 ENSMUST00000160481 ENSMUSP00000137801 TRANSLATION nonsense_mediated_decay - - 1 389.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.002 5 -2.0 MINOR ENSMUSG00000039210 Gpatch2 ENSMUST00000065573 ENSMUSP00000065009 TRANSLATION protein_coding - CCDS15605.1 1 527.0 0.0 0.0 8.9 61.9 0.0 -4,-6 1.0 7 8.634 PRINCIPAL:1 ENSMUSG00000039210 Gpatch2 ENSMUST00000110943 ENSMUSP00000106568 TRANSLATION protein_coding - - 1 490.0 0.0 0.0 4.8 61.9 0.0 -4,-6 0.5175 7 7.266 MINOR ENSMUSG00000039210 Gpatch2 ENSMUST00000097443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039210 Gpatch2 ENSMUST00000161260 - NO_TRANSLATION retained_intron ENSMUSG00000039210 Gpatch2 ENSMUST00000044812 ENSMUSP00000048979 TRANSLATION protein_coding - - 1 375.0 0.0 0.0 10.0 0.0 0.0 -4,-6 0.6231 5 3.0 MINOR ENSMUSG00000039210 Gpatch2 ENSMUST00000160570 ENSMUSP00000125750 TRANSLATION protein_coding - - 1 196.0 0.0 0.0 0.0 61.9 0.0 -4,-2 0.0256 2 6.0 MINOR ENSMUSG00000067071 Hes6 ENSMUST00000086851 ENSMUSP00000084062 TRANSLATION protein_coding - CCDS15163.1 1 224.0 0.0 2.1 8.0 78.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067071 Hes6 ENSMUST00000126136 - NO_TRANSLATION retained_intron ENSMUSG00000067071 Hes6 ENSMUST00000132188 - NO_TRANSLATION retained_intron ENSMUSG00000067071 Hes6 ENSMUST00000155752 - NO_TRANSLATION retained_intron ENSMUSG00000067071 Hes6 ENSMUST00000150520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094638 Gm21972 ENSMUST00000135197 ENSMUSP00000136581 TRANSLATION nonsense_mediated_decay,RT start - 3 98.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.6604 - -2.0 PRINCIPAL:1 ENSMUSG00000057715 A830018L16Rik ENSMUST00000171690 ENSMUSP00000132334 TRANSLATION protein_coding - CCDS48218.1 5 288.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.2024 1 0.0 ALTERNATIVE:2 ENSMUSG00000057715 A830018L16Rik ENSMUST00000141512 ENSMUSP00000139635 TRANSLATION nonsense_mediated_decay - - 2 227.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0373 1 -2.0 MINOR ENSMUSG00000057715 A830018L16Rik ENSMUST00000150870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057715 A830018L16Rik ENSMUST00000137824 ENSMUSP00000117421 TRANSLATION protein_coding - CCDS48219.1 1 462.0 0.0 0.0 0.4 0.0 0.0 -4,-6 0.6015 2 0.0 ALTERNATIVE:2 ENSMUSG00000057715 A830018L16Rik ENSMUST00000141339 ENSMUSP00000121311 TRANSLATION protein_coding start - 1 185.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0177 - -2.0 MINOR ENSMUSG00000057715 A830018L16Rik ENSMUST00000048613 ENSMUSP00000043857 TRANSLATION protein_coding - CCDS35513.1 1 459.0 0.0 0.0 0.4 0.0 0.0 -4,-6 0.9272 2 0.0 PRINCIPAL:2 ENSMUSG00000057715 A830018L16Rik ENSMUST00000142117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057715 A830018L16Rik ENSMUST00000135014 ENSMUSP00000119143 TRANSLATION protein_coding - CCDS48220.1 1 287.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.2024 1 0.0 ALTERNATIVE:2 ENSMUSG00000057715 A830018L16Rik ENSMUST00000179089 ENSMUSP00000137287 TRANSLATION protein_coding - - 1 446.0 0.0 0.0 0.1 0.0 0.0 -4,-6 0.1394 2 0.0 ALTERNATIVE:2 ENSMUSG00000057715 A830018L16Rik ENSMUST00000191437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037470 Uggt1 ENSMUST00000173999 - NO_TRANSLATION retained_intron ENSMUSG00000037470 Uggt1 ENSMUST00000174224 ENSMUSP00000133971 TRANSLATION nonsense_mediated_decay start - 3 47.0 0.0 0.1 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000037470 Uggt1 ENSMUST00000173250 - NO_TRANSLATION retained_intron ENSMUSG00000037470 Uggt1 ENSMUST00000192159 - NO_TRANSLATION retained_intron ENSMUSG00000037470 Uggt1 ENSMUST00000046875 ENSMUSP00000037930 TRANSLATION protein_coding - CCDS48238.1 1 1551.0 2.0 11.7975 5.6 1238.8 0.0 -2,0 1.0 48 16.0 PRINCIPAL:1 ENSMUSG00000037470 Uggt1 ENSMUST00000174142 ENSMUSP00000133929 TRANSLATION nonsense_mediated_decay start - 3 82.0 0.0 0.0 0.0 33.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037470 Uggt1 ENSMUST00000172592 - NO_TRANSLATION retained_intron ENSMUSG00000037470 Uggt1 ENSMUST00000173166 ENSMUSP00000134078 TRANSLATION nonsense_mediated_decay start - 5 262.0 0.0 0.375 0.0 133.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000037470 Uggt1 ENSMUST00000174716 - NO_TRANSLATION retained_intron ENSMUSG00000037470 Uggt1 ENSMUST00000174266 ENSMUSP00000134640 TRANSLATION nonsense_mediated_decay - - 1 265.0 0.0 1.81 0.0 239.1 0.0 -2,0 0.0004 5 -2.0 MINOR ENSMUSG00000037470 Uggt1 ENSMUST00000173082 - NO_TRANSLATION retained_intron ENSMUSG00000041801 Phlda3 ENSMUST00000038945 ENSMUSP00000040614 TRANSLATION protein_coding - CCDS35722.1 1 125.0 0.0 1.0 14.0 0.0 0.0 -4,-6 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000041801 Phlda3 ENSMUST00000136445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026649 Cfap126 ENSMUST00000148200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026649 Cfap126 ENSMUST00000027959 ENSMUSP00000027959 TRANSLATION protein_coding - CCDS35771.1 1 189.0 0.0 3.33 0.3 0.0 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:2 ENSMUSG00000026649 Cfap126 ENSMUST00000143623 ENSMUSP00000137709 TRANSLATION nonsense_mediated_decay - - 3 61.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0044 1 -2.0 MINOR ENSMUSG00000026649 Cfap126 ENSMUST00000127394 ENSMUSP00000117289 TRANSLATION protein_coding stop - 5 58.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0044 1 -2.0 MINOR ENSMUSG00000026649 Cfap126 ENSMUST00000151340 ENSMUSP00000123188 TRANSLATION protein_coding stop - 3 188.0 0.0 3.33 0.3 0.0 0.0 -4,-5 0.2575 3 -2.0 MINOR ENSMUSG00000026649 Cfap126 ENSMUST00000129651 ENSMUSP00000114967 TRANSLATION protein_coding - - 2 233.0 0.0 3.0 0.0 0.0 0.0 -4,-1 0.0355 3 5.34 ALTERNATIVE:2 ENSMUSG00000026649 Cfap126 ENSMUST00000124157 ENSMUSP00000115108 TRANSLATION protein_coding start/stop - 3 176.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0062 3 -2.0 MINOR ENSMUSG00000026649 Cfap126 ENSMUST00000156789 ENSMUSP00000139558 TRANSLATION nonsense_mediated_decay start - 5 65.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0044 1 -2.0 MINOR ENSMUSG00000026458 Ppfia4 ENSMUST00000186553 - NO_TRANSLATION retained_intron ENSMUSG00000026458 Ppfia4 ENSMUST00000189862 - NO_TRANSLATION retained_intron ENSMUSG00000026458 Ppfia4 ENSMUST00000189361 ENSMUSP00000139833 TRANSLATION protein_coding - - 5 1184.0 0.0 10.334 4.3 112.3 0.0 -4,-5 0.8803 13 10.0 ALTERNATIVE:2 ENSMUSG00000026458 Ppfia4 ENSMUST00000186730 ENSMUSP00000139800 TRANSLATION protein_coding start - 5 892.0 0.0 8.114 0.0 112.3 0.0 -4,-5 0.0463 10 -2.0 MINOR ENSMUSG00000026458 Ppfia4 ENSMUST00000168515 ENSMUSP00000128314 TRANSLATION protein_coding - CCDS48369.1 1 1187.0 0.0 10.334 3.5 112.3 0.0 -4,-5 1.0 14 9.516 PRINCIPAL:3 ENSMUSG00000026458 Ppfia4 ENSMUST00000186964 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045954 Cavin2 ENSMUST00000051572 ENSMUSP00000055694 TRANSLATION protein_coding - CCDS14940.1 1 418.0 0.0 1.0 6.3 310.5 0.0 -4,-5 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000026116 Tmem131 ENSMUST00000189470 ENSMUSP00000140620 TRANSLATION protein_coding start - 3 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026116 Tmem131 ENSMUST00000187917 - NO_TRANSLATION retained_intron ENSMUSG00000026116 Tmem131 ENSMUST00000185964 ENSMUSP00000141413 TRANSLATION protein_coding stop - 3 61.0 0.0 0.0 0.0 72.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026116 Tmem131 ENSMUST00000027290 ENSMUSP00000027290 TRANSLATION protein_coding - CCDS35538.1 1 1877.0 0.0 0.0 0.4 100.8 1.0 -1,3 1.0 18 6.0 PRINCIPAL:1 ENSMUSG00000026116 Tmem131 ENSMUST00000186486 ENSMUSP00000142080 TRANSLATION nonsense_mediated_decay start - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026116 Tmem131 ENSMUST00000191381 - NO_TRANSLATION retained_intron ENSMUSG00000026116 Tmem131 ENSMUST00000194563 ENSMUSP00000142307 TRANSLATION protein_coding - CCDS35538.1 5 1877.0 0.0 0.0 0.4 100.8 1.0 -1,3 1.0 18 6.0 PRINCIPAL:1 ENSMUSG00000026116 Tmem131 ENSMUST00000190442 ENSMUSP00000140187 TRANSLATION protein_coding start/stop - 3 171.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 3 -2.0 MINOR ENSMUSG00000050296 Abca12 ENSMUST00000191520 - NO_TRANSLATION retained_intron ENSMUSG00000050296 Abca12 ENSMUST00000187097 - NO_TRANSLATION retained_intron ENSMUSG00000050296 Abca12 ENSMUST00000188752 - NO_TRANSLATION retained_intron ENSMUSG00000050296 Abca12 ENSMUST00000087268 ENSMUSP00000084523 TRANSLATION protein_coding - CCDS48286.1 1 2595.0 20.0 15.546 9.2 377.8 0.0 -2,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000050296 Abca12 ENSMUST00000189102 - NO_TRANSLATION retained_intron ENSMUSG00000070501 Ifi214 ENSMUST00000195022 - NO_TRANSLATION retained_intron ENSMUSG00000070501 Ifi214 ENSMUST00000090406 ENSMUSP00000087888 TRANSLATION nonsense_mediated_decay - - 1 393.0 0.0 3.0 0.0 269.2 0.0 -4,-5 0.0935 - -2.0 MINOR ENSMUSG00000070501 Ifi214 ENSMUST00000139092 ENSMUSP00000115105 TRANSLATION protein_coding - CCDS35790.2 1 219.0 0.0 1.0 0.0 43.3 0.0 -4,-5 0.7666 - 1.998 PRINCIPAL:1 ENSMUSG00000070501 Ifi214 ENSMUST00000097463 ENSMUSP00000095071 TRANSLATION nonsense_mediated_decay - - 2 213.0 0.0 1.0 0.0 43.3 0.0 -4,-5 0.1312 - -2.0 MINOR ENSMUSG00000026463 Atp2b4 ENSMUST00000048953 ENSMUSP00000047978 TRANSLATION protein_coding - CCDS48365.1 1 1166.0 3.0 11.382 4.3 498.1 4.0 -4,-5 0.6194 25 14.538 MINOR ENSMUSG00000026463 Atp2b4 ENSMUST00000167348 ENSMUSP00000126957 TRANSLATION protein_coding start - - 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026463 Atp2b4 ENSMUST00000143567 ENSMUSP00000119242 TRANSLATION protein_coding - CCDS15298.1 5 1205.0 3.0 11.712 8.2 517.7 4.0 -4,-5 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000026463 Atp2b4 ENSMUST00000128692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026463 Atp2b4 ENSMUST00000165602 ENSMUSP00000133187 TRANSLATION protein_coding - CCDS15298.1 1 1205.0 3.0 11.712 8.2 517.7 4.0 -4,-5 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000026463 Atp2b4 ENSMUST00000112264 ENSMUSP00000107883 TRANSLATION protein_coding - - 1 1107.0 3.0 11.382 0.0 469.5 4.0 -4,-5 0.1029 19 11.448 MINOR ENSMUSG00000026463 Atp2b4 ENSMUST00000140810 - NO_TRANSLATION retained_intron ENSMUSG00000026463 Atp2b4 ENSMUST00000125659 ENSMUSP00000116941 TRANSLATION protein_coding - - 1 1172.0 3.0 11.382 8.2 498.1 4.0 -4,-5 0.6465 25 16.164 MINOR ENSMUSG00000073664 Nbeal1 ENSMUST00000188450 - NO_TRANSLATION retained_intron ENSMUSG00000073664 Nbeal1 ENSMUST00000035569 ENSMUSP00000049393 TRANSLATION protein_coding start/stop - 5 1179.0 0.0 9.926 0.0 917.6 0.0 -4,-6 0.0715 13 -2.0 MINOR ENSMUSG00000073664 Nbeal1 ENSMUST00000187195 - NO_TRANSLATION retained_intron ENSMUSG00000073664 Nbeal1 ENSMUST00000185573 - NO_TRANSLATION retained_intron ENSMUSG00000073664 Nbeal1 ENSMUST00000162291 ENSMUSP00000125592 TRANSLATION nonsense_mediated_decay start - 1 734.0 0.0 1.146 0.0 491.3 0.0 -4,-5 0.0091 7 -2.0 MINOR ENSMUSG00000073664 Nbeal1 ENSMUST00000185984 - NO_TRANSLATION retained_intron ENSMUSG00000073664 Nbeal1 ENSMUST00000160834 ENSMUSP00000124056 TRANSLATION protein_coding - CCDS48274.1 5 2688.0 0.0 10.651 7.3 1051.2 0.0 -4,-6 1.0 33 14.0 PRINCIPAL:1 ENSMUSG00000073664 Nbeal1 ENSMUST00000190958 - NO_TRANSLATION retained_intron ENSMUSG00000073664 Nbeal1 ENSMUST00000160980 ENSMUSP00000125147 TRANSLATION protein_coding start/stop - 3 376.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0011 5 -2.0 MINOR ENSMUSG00000073664 Nbeal1 ENSMUST00000159344 ENSMUSP00000124850 TRANSLATION protein_coding start/stop - 5 246.0 0.0 5.432 0.0 293.7 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000066755 Tnfsf18 ENSMUST00000086084 ENSMUSP00000083251 TRANSLATION protein_coding - CCDS15417.1 1 173.0 0.0 1.5 0.3 21.8 0.0 -3,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062209 Erbb4 ENSMUST00000153432 ENSMUSP00000115373 TRANSLATION protein_coding stop - 5 732.0 0.0 15.93 0.0 464.7 1.0 2,-2 0.0089 7 -2.0 MINOR ENSMUSG00000062209 Erbb4 ENSMUST00000126682 - NO_TRANSLATION retained_intron ENSMUSG00000062209 Erbb4 ENSMUST00000131148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062209 Erbb4 ENSMUST00000121473 ENSMUSP00000114123 TRANSLATION protein_coding - CCDS48285.1 1 1292.0 0.0 22.68 8.9 772.4 1.0 2,-2 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000062209 Erbb4 ENSMUST00000119142 ENSMUSP00000112713 TRANSLATION protein_coding - - 5 1308.0 0.0 22.68 0.0 772.4 1.0 2,-2 0.3874 11 12.0 MINOR ENSMUSG00000049456 Or10j3b ENSMUST00000216556 ENSMUSP00000150122 TRANSLATION protein_coding - CCDS15525.1 5 313.0 0.0 1.0 12.5 184.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049456 Or10j3b ENSMUST00000056592 ENSMUSP00000050406 TRANSLATION protein_coding - CCDS15525.1 - 313.0 0.0 1.0 12.5 184.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049456 Or10j3b ENSMUST00000217374 ENSMUSP00000151077 TRANSLATION protein_coding - CCDS15525.1 5 313.0 0.0 1.0 12.5 184.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066672 Or10x1 ENSMUST00000217962 ENSMUSP00000151782 TRANSLATION protein_coding - CCDS15542.1 5 309.0 0.0 0.8 8.7 153.7 7.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066672 Or10x1 ENSMUST00000220394 ENSMUSP00000151947 TRANSLATION protein_coding - CCDS15542.1 5 309.0 0.0 0.8 8.7 153.7 7.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066672 Or10x1 ENSMUST00000085862 ENSMUSP00000083024 TRANSLATION protein_coding - CCDS15542.1 - 309.0 0.0 0.8 8.7 153.7 7.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000009772 Nuak2 ENSMUST00000133246 - NO_TRANSLATION retained_intron ENSMUSG00000009772 Nuak2 ENSMUST00000082125 ENSMUSP00000080769 TRANSLATION protein_coding - CCDS15283.1 1 631.0 18.0 5.35 0.4 254.1 0.0 -4,-7 0.5146 - 11.67 ALTERNATIVE:2 ENSMUSG00000009772 Nuak2 ENSMUST00000072177 ENSMUSP00000072039 TRANSLATION protein_coding - CCDS56642.1 1 639.0 18.0 5.515 0.1 243.0 0.0 -4,-7 0.754 - 12.0 PRINCIPAL:4 ENSMUSG00000009772 Nuak2 ENSMUST00000128661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026127 Imp4 ENSMUST00000137794 ENSMUSP00000121452 TRANSLATION nonsense_mediated_decay - - 2 97.0 0.0 0.35 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000026127 Imp4 ENSMUST00000187077 - NO_TRANSLATION retained_intron ENSMUSG00000026127 Imp4 ENSMUST00000136770 ENSMUSP00000120823 TRANSLATION nonsense_mediated_decay start - 5 171.0 2.0 2.15 0.0 0.0 0.0 -4,-2 0.0004 2 -2.0 MINOR ENSMUSG00000026127 Imp4 ENSMUST00000027303 ENSMUSP00000027303 TRANSLATION protein_coding - CCDS35536.1 1 291.0 2.0 4.91 12.4 104.1 0.0 -4,-2 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000026127 Imp4 ENSMUST00000191000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026127 Imp4 ENSMUST00000128086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026127 Imp4 ENSMUST00000149962 ENSMUSP00000141982 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 0.35 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026127 Imp4 ENSMUST00000134327 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045515 Pou3f3 ENSMUST00000054883 ENSMUSP00000052088 TRANSLATION protein_coding - CCDS14917.1 - 497.0 0.0 0.32 3.7 194.8 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000045515 Pou3f3 ENSMUST00000239323 ENSMUSP00000159226 TRANSLATION protein_coding - CCDS14917.1 - 497.0 0.0 0.32 3.7 194.8 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000048960 Prex2 ENSMUST00000189385 ENSMUSP00000140863 TRANSLATION nonsense_mediated_decay start - 1 24.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0131 - -2.0 MINOR ENSMUSG00000048960 Prex2 ENSMUST00000190935 - NO_TRANSLATION retained_intron ENSMUSG00000048960 Prex2 ENSMUST00000188189 ENSMUSP00000140621 TRANSLATION nonsense_mediated_decay start - 5 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0298 - -2.0 MINOR ENSMUSG00000048960 Prex2 ENSMUST00000189822 - NO_TRANSLATION retained_intron ENSMUSG00000048960 Prex2 ENSMUST00000027056 ENSMUSP00000027056 TRANSLATION protein_coding - CCDS48217.1 1 1598.0 0.0 15.2 1.5 314.7 0.0 -4,-5 1.0 20 13.0 PRINCIPAL:1 ENSMUSG00000048960 Prex2 ENSMUST00000187745 ENSMUSP00000140788 TRANSLATION nonsense_mediated_decay start - 5 50.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048960 Prex2 ENSMUST00000187694 - NO_TRANSLATION retained_intron ENSMUSG00000048960 Prex2 ENSMUST00000188154 ENSMUSP00000140580 TRANSLATION nonsense_mediated_decay start - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000033722 BC034090 ENSMUST00000187096 ENSMUSP00000140632 TRANSLATION protein_coding stop - 3 159.0 0.0 0.0 0.0 143.7 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000033722 BC034090 ENSMUST00000186082 - NO_TRANSLATION retained_intron ENSMUSG00000033722 BC034090 ENSMUST00000187781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033722 BC034090 ENSMUST00000186551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033722 BC034090 ENSMUST00000035914 ENSMUSP00000037456 TRANSLATION protein_coding - - 1 840.0 0.0 0.0 0.0 171.9 0.0 -4,-2 0.0192 2 3.804 MINOR ENSMUSG00000033722 BC034090 ENSMUST00000186156 ENSMUSP00000139623 TRANSLATION protein_coding - - 5 1202.0 0.0 0.0 0.0 208.5 0.0 -4,-2 0.9027 2 6.0 PRINCIPAL:1 ENSMUSG00000033722 BC034090 ENSMUST00000185937 - NO_TRANSLATION retained_intron ENSMUSG00000033722 BC034090 ENSMUST00000188492 - NO_TRANSLATION retained_intron ENSMUSG00000033722 BC034090 ENSMUST00000190976 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034000 Neu4 ENSMUST00000050890 ENSMUSP00000051151 TRANSLATION protein_coding - CCDS15199.1 1 478.0 3.0 1.92 2.4 94.1 0.0 -4,0 1.0 1 10.0 PRINCIPAL:2 ENSMUSG00000034000 Neu4 ENSMUST00000190212 ENSMUSP00000140127 TRANSLATION protein_coding - CCDS78660.1 1 501.0 3.0 1.92 0.0 94.1 0.0 -4,-5 0.2108 1 9.0 ALTERNATIVE:2 ENSMUSG00000039349 C130074G19Rik ENSMUST00000048308 ENSMUSP00000041904 TRANSLATION protein_coding - CCDS35816.1 1 141.0 0.0 1.0 3.1 98.5 0.0 -4,0 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000043467 Zbtb37 ENSMUST00000177003 ENSMUSP00000134816 TRANSLATION protein_coding stop - 2 98.0 0.0 0.8 0.0 69.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043467 Zbtb37 ENSMUST00000163079 ENSMUSP00000134753 TRANSLATION nonsense_mediated_decay - CCDS15412.1 2 504.0 12.0 1.3 22.7 136.1 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000043467 Zbtb37 ENSMUST00000171748 ENSMUSP00000129965 TRANSLATION protein_coding - - 5 310.0 0.0 0.8 1.1 94.0 0.0 -4,-5 0.0116 - 7.184 MINOR ENSMUSG00000043467 Zbtb37 ENSMUST00000160056 ENSMUSP00000134769 TRANSLATION nonsense_mediated_decay - CCDS15412.1 2 504.0 12.0 1.3 22.7 136.1 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000043467 Zbtb37 ENSMUST00000172044 ENSMUSP00000131576 TRANSLATION protein_coding - CCDS15412.1 1 504.0 12.0 1.3 22.7 136.1 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000043467 Zbtb37 ENSMUST00000162226 ENSMUSP00000125253 TRANSLATION protein_coding - CCDS15412.1 1 504.0 12.0 1.3 22.7 136.1 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000043467 Zbtb37 ENSMUST00000159250 ENSMUSP00000125417 TRANSLATION protein_coding - CCDS15412.1 1 504.0 12.0 1.3 22.7 136.1 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000026579 F5 ENSMUST00000086040 ENSMUSP00000083204 TRANSLATION protein_coding - CCDS35754.1 1 2183.0 20.0 22.35 0.1 276.4 0.0 2,-2 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000044337 Ackr3 ENSMUST00000065587 ENSMUSP00000069114 TRANSLATION protein_coding - CCDS15152.1 1 362.0 0.0 0.5 12.5 152.4 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000044337 Ackr3 ENSMUST00000159654 ENSMUSP00000135668 TRANSLATION protein_coding stop - 3 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0124 - -2.0 MINOR ENSMUSG00000026466 Tor1aip1 ENSMUST00000141980 - NO_TRANSLATION retained_intron ENSMUSG00000026466 Tor1aip1 ENSMUST00000097527 ENSMUSP00000095134 TRANSLATION protein_coding - CCDS48402.1 1 576.0 0.0 1.9 0.0 569.1 2.0 -4,-5 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000026466 Tor1aip1 ENSMUST00000027738 ENSMUSP00000027738 TRANSLATION protein_coding - CCDS15387.1 1 520.0 0.0 1.9 0.0 544.2 2.0 -4,-5 0.2383 15 10.506 MINOR ENSMUSG00000026466 Tor1aip1 ENSMUST00000124212 - NO_TRANSLATION retained_intron ENSMUSG00000026466 Tor1aip1 ENSMUST00000169241 ENSMUSP00000126751 TRANSLATION protein_coding - CCDS48401.1 3 391.0 0.0 1.9 0.0 543.2 2.0 -4,-5 0.2443 12 10.446 MINOR ENSMUSG00000026466 Tor1aip1 ENSMUST00000130995 ENSMUSP00000141619 TRANSLATION nonsense_mediated_decay - - 2 324.0 0.0 0.0 0.0 25.0 0.0 -4,-5 0.0007 6 -2.0 MINOR ENSMUSG00000026466 Tor1aip1 ENSMUST00000141878 ENSMUSP00000123391 TRANSLATION protein_coding stop - 3 176.0 0.0 0.0 0.0 36.5 2.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026466 Tor1aip1 ENSMUST00000123705 ENSMUSP00000120602 TRANSLATION nonsense_mediated_decay start - 5 102.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026466 Tor1aip1 ENSMUST00000136397 ENSMUSP00000118654 TRANSLATION protein_coding stop - 3 190.0 0.0 0.9 0.0 64.4 2.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026466 Tor1aip1 ENSMUST00000136331 ENSMUSP00000137617 TRANSLATION nonsense_mediated_decay - - 2 291.0 0.0 0.0 0.0 25.9 0.0 -4,-5 0.0007 6 -2.0 MINOR ENSMUSG00000026203 Dnajb2 ENSMUST00000082158 ENSMUSP00000080796 TRANSLATION protein_coding - CCDS35624.1 5 277.0 0.0 4.3 13.0 114.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000026203 Dnajb2 ENSMUST00000055223 ENSMUSP00000052520 TRANSLATION protein_coding - CCDS15068.1 5 259.0 0.0 3.8 0.1 105.6 0.0 -4,-5 0.0239 3 10.482 MINOR ENSMUSG00000026203 Dnajb2 ENSMUST00000190379 - NO_TRANSLATION retained_intron ENSMUSG00000026203 Dnajb2 ENSMUST00000185654 ENSMUSP00000140456 TRANSLATION protein_coding stop - 2 76.0 0.0 2.25 0.0 97.4 0.0 -4,-5 0.0061 2 -2.0 MINOR ENSMUSG00000026203 Dnajb2 ENSMUST00000186600 - NO_TRANSLATION retained_intron ENSMUSG00000026203 Dnajb2 ENSMUST00000190445 ENSMUSP00000139573 TRANSLATION nonsense_mediated_decay start - 5 110.0 0.0 0.75 0.0 21.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026203 Dnajb2 ENSMUST00000188346 ENSMUSP00000140588 TRANSLATION protein_coding - CCDS35624.1 1 277.0 0.0 4.3 13.0 114.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000026203 Dnajb2 ENSMUST00000188931 ENSMUSP00000140566 TRANSLATION protein_coding - CCDS78622.1 1 324.0 0.0 4.3 6.9 114.2 0.0 -4,-5 0.7207 5 13.968 MINOR ENSMUSG00000026203 Dnajb2 ENSMUST00000187058 ENSMUSP00000140637 TRANSLATION protein_coding - CCDS15068.1 1 259.0 0.0 3.8 0.1 105.6 0.0 -4,-5 0.0239 3 10.482 MINOR ENSMUSG00000026203 Dnajb2 ENSMUST00000188290 ENSMUSP00000140634 TRANSLATION protein_coding - CCDS35624.1 1 277.0 0.0 4.3 13.0 114.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000026203 Dnajb2 ENSMUST00000188628 - NO_TRANSLATION retained_intron ENSMUSG00000026203 Dnajb2 ENSMUST00000185403 ENSMUSP00000139982 TRANSLATION nonsense_mediated_decay - - 5 92.0 0.0 1.95 0.0 87.7 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000056220 Pla2g4a ENSMUST00000111926 ENSMUSP00000107557 TRANSLATION protein_coding - CCDS78700.1 1 740.0 12.0 9.3 5.7 542.1 0.0 -4,-5 0.5423 17 18.908 MINOR ENSMUSG00000056220 Pla2g4a ENSMUST00000134676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056220 Pla2g4a ENSMUST00000155438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056220 Pla2g4a ENSMUST00000142040 - NO_TRANSLATION retained_intron ENSMUSG00000056220 Pla2g4a ENSMUST00000070200 ENSMUSP00000070868 TRANSLATION protein_coding - CCDS15352.1 1 748.0 12.0 9.3 21.7 542.1 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000056220 Pla2g4a ENSMUST00000190507 ENSMUSP00000139851 TRANSLATION protein_coding stop - 2 149.0 8.0 3.5 0.0 57.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000054203 Ifi205 ENSMUST00000192166 - NO_TRANSLATION retained_intron ENSMUSG00000054203 Ifi205 ENSMUST00000059226 ENSMUSP00000062409 TRANSLATION protein_coding - CCDS15534.1 1 404.0 0.0 3.3 0.0 279.7 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000045382 Cxcr4 ENSMUST00000052172 ENSMUSP00000053489 TRANSLATION protein_coding - CCDS15254.1 1 359.0 0.0 1.8 0.0 230.2 9.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000045382 Cxcr4 ENSMUST00000142893 ENSMUSP00000120153 TRANSLATION protein_coding stop - 1 272.0 0.0 1.0 0.0 205.9 8.0 -4,-5 0.0134 1 -2.0 MINOR ENSMUSG00000014226 Cacybp ENSMUST00000194167 - NO_TRANSLATION retained_intron ENSMUSG00000014226 Cacybp ENSMUST00000014370 ENSMUSP00000014370 TRANSLATION protein_coding - CCDS15406.1 1 229.0 0.0 5.41 10.6 183.6 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000014226 Cacybp ENSMUST00000195654 ENSMUSP00000142252 TRANSLATION protein_coding stop - 3 135.0 0.0 3.08 0.0 136.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005681 Apoa2 ENSMUST00000005824 ENSMUSP00000005824 TRANSLATION protein_coding - CCDS35773.1 1 102.0 0.0 0.8 9.6 136.1 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000005681 Apoa2 ENSMUST00000111321 ENSMUSP00000106953 TRANSLATION protein_coding - CCDS35773.1 2 102.0 0.0 0.8 9.6 136.1 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000005681 Apoa2 ENSMUST00000111320 ENSMUSP00000106952 TRANSLATION protein_coding - CCDS35773.1 2 102.0 0.0 0.8 9.6 136.1 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000005681 Apoa2 ENSMUST00000111319 ENSMUSP00000106951 TRANSLATION protein_coding - CCDS35773.1 3 102.0 0.0 0.8 9.6 136.1 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000033544 Angptl1 ENSMUST00000027885 ENSMUSP00000027885 TRANSLATION protein_coding - CCDS15397.1 1 490.0 9.0 3.0 20.6 245.5 0.0 3,-2 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000033544 Angptl1 ENSMUST00000111720 ENSMUSP00000107349 TRANSLATION protein_coding - - 1 323.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0029 3 0.0 MINOR ENSMUSG00000067813 Xkr9 ENSMUST00000088542 ENSMUSP00000085900 TRANSLATION protein_coding - CCDS14824.1 1 373.0 0.0 0.0 9.3 283.7 0.0 -2,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000048495 Tyw5 ENSMUST00000162686 ENSMUSP00000125427 TRANSLATION protein_coding - CCDS14966.2 1 315.0 12.0 8.778 14.7 143.2 0.0 -4,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000048495 Tyw5 ENSMUST00000163039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048495 Tyw5 ENSMUST00000161780 - NO_TRANSLATION retained_intron ENSMUSG00000048495 Tyw5 ENSMUST00000161092 - NO_TRANSLATION retained_intron ENSMUSG00000048495 Tyw5 ENSMUST00000162663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048495 Tyw5 ENSMUST00000079998 ENSMUSP00000078912 TRANSLATION nonsense_mediated_decay - - 1 121.0 1.0 2.198 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000048495 Tyw5 ENSMUST00000161727 - NO_TRANSLATION retained_intron ENSMUSG00000048495 Tyw5 ENSMUST00000097732 - NO_TRANSLATION retained_intron ENSMUSG00000048495 Tyw5 ENSMUST00000160118 ENSMUSP00000125386 TRANSLATION nonsense_mediated_decay - - 3 131.0 1.0 2.363 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000048495 Tyw5 ENSMUST00000160837 ENSMUSP00000128576 TRANSLATION protein_coding start/stop - 3 255.0 12.0 6.415 0.0 141.6 0.0 -4,-7 0.0066 6 -2.0 MINOR ENSMUSG00000026600 Soat1 ENSMUST00000051396 ENSMUSP00000058344 TRANSLATION protein_coding - CCDS35743.1 1 540.0 0.0 10.05 0.7 229.7 7.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000026600 Soat1 ENSMUST00000187987 - NO_TRANSLATION retained_intron ENSMUSG00000026600 Soat1 ENSMUST00000186420 - NO_TRANSLATION retained_intron ENSMUSG00000026600 Soat1 ENSMUST00000187507 ENSMUSP00000139431 TRANSLATION protein_coding stop - 5 220.0 0.0 2.75 0.0 23.0 3.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000026600 Soat1 ENSMUST00000189661 ENSMUSP00000140721 TRANSLATION protein_coding - CCDS35743.1 1 540.0 0.0 10.05 0.7 229.7 7.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000026600 Soat1 ENSMUST00000187073 - NO_TRANSLATION retained_intron ENSMUSG00000026600 Soat1 ENSMUST00000188027 ENSMUSP00000141074 TRANSLATION protein_coding stop - 3 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026600 Soat1 ENSMUST00000191379 - NO_TRANSLATION retained_intron ENSMUSG00000050625 Ccdc121rt1 ENSMUST00000058825 ENSMUSP00000052294 TRANSLATION protein_coding - CCDS48472.1 - 323.0 0.0 0.16 0.1 263.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038174 Hycc2 ENSMUST00000160546 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038174 Hycc2 ENSMUST00000038372 ENSMUSP00000038718 TRANSLATION protein_coding - CCDS14976.1 1 530.0 0.0 5.512 20.5 396.5 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000038174 Hycc2 ENSMUST00000187717 ENSMUSP00000141058 TRANSLATION nonsense_mediated_decay - - 5 100.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038174 Hycc2 ENSMUST00000159980 - NO_TRANSLATION retained_intron ENSMUSG00000038174 Hycc2 ENSMUST00000159185 - NO_TRANSLATION retained_intron ENSMUSG00000038174 Hycc2 ENSMUST00000191472 - NO_TRANSLATION retained_intron ENSMUSG00000038174 Hycc2 ENSMUST00000161600 ENSMUSP00000123728 TRANSLATION protein_coding - CCDS14976.1 1 530.0 0.0 5.512 20.5 396.5 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000038174 Hycc2 ENSMUST00000097724 ENSMUSP00000095331 TRANSLATION protein_coding - CCDS78588.1 1 586.0 0.0 5.512 18.3 396.5 0.0 -4,-5 0.9356 13 11.548 ALTERNATIVE:1 ENSMUSG00000038174 Hycc2 ENSMUST00000161000 ENSMUSP00000125653 TRANSLATION protein_coding stop - 3 98.0 0.0 1.55 0.0 95.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000042182 Bend6 ENSMUST00000139700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042182 Bend6 ENSMUST00000126724 - NO_TRANSLATION retained_intron ENSMUSG00000042182 Bend6 ENSMUST00000195350 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042182 Bend6 ENSMUST00000115161 ENSMUSP00000110814 TRANSLATION protein_coding - CCDS78557.1 1 219.0 0.0 0.0 0.0 45.9 0.0 -4,-5 0.1049 2 6.0 MINOR ENSMUSG00000042182 Bend6 ENSMUST00000129464 ENSMUSP00000141053 TRANSLATION protein_coding - - 1 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000042182 Bend6 ENSMUST00000062289 ENSMUSP00000052919 TRANSLATION protein_coding - CCDS35533.1 1 281.0 0.0 0.0 10.3 45.9 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000026000 Lancl1 ENSMUST00000113979 ENSMUSP00000109612 TRANSLATION protein_coding - CCDS15025.1 1 399.0 11.0 8.58 24.6 347.4 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000026000 Lancl1 ENSMUST00000027149 ENSMUSP00000027149 TRANSLATION protein_coding - CCDS15025.1 1 399.0 11.0 8.58 24.6 347.4 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000026000 Lancl1 ENSMUST00000133508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026000 Lancl1 ENSMUST00000189210 - NO_TRANSLATION retained_intron ENSMUSG00000026000 Lancl1 ENSMUST00000149996 ENSMUSP00000122752 TRANSLATION protein_coding stop - 3 173.0 1.0 3.75 0.0 91.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026000 Lancl1 ENSMUST00000119559 ENSMUSP00000113080 TRANSLATION protein_coding - CCDS15025.1 1 399.0 11.0 8.58 24.6 347.4 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000026112 Coa5 ENSMUST00000027286 ENSMUSP00000027286 TRANSLATION protein_coding - CCDS35541.1 1 74.0 0.0 2.05 34.7 73.5 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026112 Coa5 ENSMUST00000192179 - NO_TRANSLATION retained_intron ENSMUSG00000026280 Atg4b ENSMUST00000027502 ENSMUSP00000027502 TRANSLATION protein_coding - CCDS15195.1 1 393.0 0.0 9.28 19.2 333.4 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000026280 Atg4b ENSMUST00000189152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026280 Atg4b ENSMUST00000189872 - NO_TRANSLATION retained_intron ENSMUSG00000026280 Atg4b ENSMUST00000186001 - NO_TRANSLATION retained_intron ENSMUSG00000026280 Atg4b ENSMUST00000187824 ENSMUSP00000139541 TRANSLATION protein_coding stop - 5 121.0 0.0 3.58 0.0 58.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026280 Atg4b ENSMUST00000135762 - NO_TRANSLATION retained_intron ENSMUSG00000026280 Atg4b ENSMUST00000186811 ENSMUSP00000139463 TRANSLATION nonsense_mediated_decay start - 5 63.0 0.0 1.632 0.0 38.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026280 Atg4b ENSMUST00000185754 - NO_TRANSLATION retained_intron ENSMUSG00000026280 Atg4b ENSMUST00000186124 - NO_TRANSLATION retained_intron ENSMUSG00000026280 Atg4b ENSMUST00000149436 ENSMUSP00000123383 TRANSLATION protein_coding stop - 3 150.0 0.0 4.25 0.0 154.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000026280 Atg4b ENSMUST00000185482 ENSMUSP00000140758 TRANSLATION nonsense_mediated_decay - - 5 143.0 0.0 3.75 0.0 127.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026301 Iqca ENSMUST00000211999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026301 Iqca ENSMUST00000113094 ENSMUSP00000108717 TRANSLATION protein_coding - CCDS48317.1 5 829.0 12.0 2.5 0.0 51.0 0.0 -4,-5 0.3822 2 12.0 ALTERNATIVE:2 ENSMUSG00000026301 Iqca ENSMUST00000189011 ENSMUSP00000140367 TRANSLATION protein_coding start - 3 76.0 7.0 0.6 0.0 31.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026301 Iqca ENSMUST00000186522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026301 Iqca ENSMUST00000212394 ENSMUSP00000148643 TRANSLATION protein_coding - - 5 857.0 12.0 2.5 0.0 51.0 0.0 -4,-5 0.8027 2 12.0 PRINCIPAL:2 ENSMUSG00000026301 Iqca ENSMUST00000186403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026301 Iqca ENSMUST00000189690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026301 Iqca ENSMUST00000212859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102416 4933424G06Rik ENSMUST00000192873 ENSMUSP00000147230 TRANSLATION protein_coding stop - 5 112.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.018 - -2.0 MINOR ENSMUSG00000102416 4933424G06Rik ENSMUST00000195374 - NO_TRANSLATION retained_intron ENSMUSG00000102416 4933424G06Rik ENSMUST00000208994 ENSMUSP00000146900 TRANSLATION protein_coding - - 1 267.0 0.0 0.0 0.1 0.0 0.0 -1,-4 0.5939 - 0.0 PRINCIPAL:1 ENSMUSG00000102416 4933424G06Rik ENSMUST00000193459 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059371 Or6k14 ENSMUST00000213832 ENSMUSP00000149570 TRANSLATION protein_coding - CCDS48455.1 5 315.0 0.0 1.0 10.7 195.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059371 Or6k14 ENSMUST00000080831 ENSMUSP00000079644 TRANSLATION protein_coding - CCDS48455.1 - 315.0 0.0 1.0 10.7 195.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026036 Nif3l1 ENSMUST00000129759 ENSMUSP00000124713 TRANSLATION nonsense_mediated_decay - - 5 155.0 0.0 1.5264 0.0 138.8 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000026036 Nif3l1 ENSMUST00000151272 ENSMUSP00000123553 TRANSLATION protein_coding stop - 2 131.0 0.0 1.0 0.0 116.6 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000026036 Nif3l1 ENSMUST00000171597 ENSMUSP00000127501 TRANSLATION protein_coding - CCDS14973.1 1 376.0 0.0 6.25 12.3 268.1 0.0 -4,0 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000026036 Nif3l1 ENSMUST00000140723 - NO_TRANSLATION retained_intron ENSMUSG00000026036 Nif3l1 ENSMUST00000185578 - NO_TRANSLATION retained_intron ENSMUSG00000026036 Nif3l1 ENSMUST00000188295 - NO_TRANSLATION retained_intron ENSMUSG00000026036 Nif3l1 ENSMUST00000114337 ENSMUSP00000109976 TRANSLATION protein_coding - - 2 329.0 0.0 5.25 0.0 211.3 0.0 -4,0 0.0004 7 6.594 MINOR ENSMUSG00000026036 Nif3l1 ENSMUST00000087521 ENSMUSP00000084799 TRANSLATION protein_coding - CCDS14973.1 1 376.0 0.0 6.25 12.3 268.1 0.0 -4,0 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000045210 Vcpip1 ENSMUST00000057438 ENSMUSP00000051248 TRANSLATION protein_coding - CCDS14814.1 1 1220.0 0.0 0.0 0.0 44.9 0.0 -4,-6 1.0 35 6.0 PRINCIPAL:1 ENSMUSG00000073616 Cops9 ENSMUST00000112999 ENSMUSP00000108623 TRANSLATION protein_coding - - 3 100.0 0.0 0.0 0.0 72.2 0.0 -4,-5 0.0004 - 3.372 MINOR ENSMUSG00000073616 Cops9 ENSMUST00000097642 ENSMUSP00000095247 TRANSLATION protein_coding - CCDS48325.1 1 57.0 0.0 0.0 20.7 116.0 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000073616 Cops9 ENSMUST00000154129 - NO_TRANSLATION retained_intron ENSMUSG00000073616 Cops9 ENSMUST00000148508 ENSMUSP00000123716 TRANSLATION nonsense_mediated_decay start - 2 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000073616 Cops9 ENSMUST00000129730 - NO_TRANSLATION retained_intron ENSMUSG00000026163 Sphkap ENSMUST00000053075 - NO_TRANSLATION retained_intron ENSMUSG00000026163 Sphkap ENSMUST00000160567 - NO_TRANSLATION retained_intron ENSMUSG00000026163 Sphkap ENSMUST00000160953 ENSMUSP00000124872 TRANSLATION protein_coding - CCDS48298.1 1 1658.0 0.0 0.0 0.0 32.4 0.0 -4,-5 1.0 22 6.0 PRINCIPAL:1 ENSMUSG00000026163 Sphkap ENSMUST00000160237 - NO_TRANSLATION retained_intron ENSMUSG00000026163 Sphkap ENSMUST00000159078 ENSMUSP00000124384 TRANSLATION protein_coding start - 1 1400.0 0.0 0.0 0.0 32.4 0.0 -4,-7 0.2755 17 -2.0 MINOR ENSMUSG00000007805 Twist2 ENSMUST00000186075 ENSMUSP00000139531 TRANSLATION protein_coding - CCDS15166.1 - 160.0 0.0 1.0 36.9 60.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000007805 Twist2 ENSMUST00000007949 ENSMUSP00000007949 TRANSLATION protein_coding - CCDS15166.1 1 160.0 0.0 1.0 36.9 60.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000004031 Brinp2 ENSMUST00000004133 ENSMUSP00000004133 TRANSLATION protein_coding - CCDS15401.1 1 783.0 0.0 0.0 14.5 28.8 0.0 0,-3 1.0 10 10.0 PRINCIPAL:1 ENSMUSG00000004031 Brinp2 ENSMUST00000192709 - NO_TRANSLATION retained_intron ENSMUSG00000004031 Brinp2 ENSMUST00000194578 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004031 Brinp2 ENSMUST00000195271 ENSMUSP00000141709 TRANSLATION nonsense_mediated_decay - - 2 187.0 0.0 0.0 0.0 27.3 0.0 0,-3 0.0045 3 -2.0 MINOR ENSMUSG00000036155 Mgat5 ENSMUST00000038361 ENSMUSP00000038359 TRANSLATION protein_coding - CCDS15245.1 1 740.0 0.0 10.2 26.8 1082.2 1.0 -2,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000036155 Mgat5 ENSMUST00000171405 ENSMUSP00000129166 TRANSLATION protein_coding - CCDS15245.1 1 740.0 0.0 10.2 26.8 1082.2 1.0 -2,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000036155 Mgat5 ENSMUST00000190921 - NO_TRANSLATION retained_intron ENSMUSG00000036155 Mgat5 ENSMUST00000189427 - NO_TRANSLATION retained_intron ENSMUSG00000026523 Wdr64 ENSMUST00000194087 ENSMUSP00000141740 TRANSLATION protein_coding - - 5 1074.0 0.0 5.126 2.2 30.1 0.0 -4,-5 0.4627 3 12.522 MINOR ENSMUSG00000026523 Wdr64 ENSMUST00000194783 ENSMUSP00000141384 TRANSLATION nonsense_mediated_decay start - 1 521.0 0.0 3.052 0.0 30.1 0.0 -4,-5 0.0155 - -2.0 MINOR ENSMUSG00000026523 Wdr64 ENSMUST00000171939 ENSMUSP00000128678 TRANSLATION protein_coding - - 5 1086.0 0.0 5.126 2.2 30.1 0.0 -4,-5 0.5624 3 12.522 MINOR ENSMUSG00000026523 Wdr64 ENSMUST00000094288 ENSMUSP00000091846 TRANSLATION protein_coding - CCDS48460.1 5 1084.0 0.0 5.126 5.6 30.1 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000026523 Wdr64 ENSMUST00000195794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055214 Pld5 ENSMUST00000125404 ENSMUSP00000121428 TRANSLATION nonsense_mediated_decay - - 1 109.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0021 - -2.0 MINOR ENSMUSG00000055214 Pld5 ENSMUST00000156184 - NO_TRANSLATION retained_intron ENSMUSG00000055214 Pld5 ENSMUST00000111166 ENSMUSP00000106796 TRANSLATION protein_coding - - 1 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - 0.0 MINOR ENSMUSG00000055214 Pld5 ENSMUST00000065967 ENSMUSP00000069326 TRANSLATION protein_coding - CCDS15552.1 1 536.0 0.0 4.464 10.0 29.5 1.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000055214 Pld5 ENSMUST00000144340 - NO_TRANSLATION retained_intron ENSMUSG00000055214 Pld5 ENSMUST00000111167 ENSMUSP00000106797 TRANSLATION protein_coding - CCDS56660.1 1 474.0 0.0 4.464 2.6 29.5 1.0 -1,-5 0.4263 2 12.534 MINOR ENSMUSG00000049605 Or10j2 ENSMUST00000059754 ENSMUSP00000052418 TRANSLATION protein_coding - CCDS15526.1 - 310.0 0.0 1.0 12.5 185.0 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049605 Or10j2 ENSMUST00000213420 ENSMUSP00000150427 TRANSLATION protein_coding - CCDS15526.1 5 310.0 0.0 1.0 12.5 185.0 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050069 Grem2 ENSMUST00000055294 ENSMUSP00000049640 TRANSLATION protein_coding - CCDS15545.1 1 168.0 0.0 1.0 21.6 139.4 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026564 Styxl2 ENSMUST00000085992 ENSMUSP00000083155 TRANSLATION protein_coding - CCDS15446.1 1 1138.0 7.0 1.2 0.4 87.1 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000026564 Styxl2 ENSMUST00000192369 ENSMUSP00000141564 TRANSLATION protein_coding - CCDS15446.1 1 1138.0 7.0 1.2 0.4 87.1 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000040693 Slco4c1 ENSMUST00000071985 ENSMUSP00000071875 TRANSLATION protein_coding - CCDS35675.1 1 722.0 0.0 0.0 1.1 646.1 0.0 -4,-7 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000006005 Tpr ENSMUST00000119161 ENSMUSP00000112606 TRANSLATION protein_coding - - 5 2357.0 0.0 3.75 0.0 113.9 0.0 -4,-5 0.3187 77 8.0 ALTERNATIVE:2 ENSMUSG00000006005 Tpr ENSMUST00000131701 - NO_TRANSLATION retained_intron ENSMUSG00000006005 Tpr ENSMUST00000124484 ENSMUSP00000121991 TRANSLATION protein_coding start - 3 144.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000006005 Tpr ENSMUST00000151563 ENSMUSP00000116012 TRANSLATION protein_coding start - 1 611.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0043 6 -2.0 MINOR ENSMUSG00000006005 Tpr ENSMUST00000124973 ENSMUSP00000117616 TRANSLATION protein_coding - CCDS35734.2 1 2431.0 0.0 3.75 0.0 113.9 0.0 -4,-2 1.0 78 8.0 PRINCIPAL:2 ENSMUSG00000006005 Tpr ENSMUST00000150752 - NO_TRANSLATION retained_intron ENSMUSG00000006005 Tpr ENSMUST00000132522 - NO_TRANSLATION retained_intron ENSMUSG00000006005 Tpr ENSMUST00000132257 - NO_TRANSLATION retained_intron ENSMUSG00000006005 Tpr ENSMUST00000141827 - NO_TRANSLATION retained_intron ENSMUSG00000006005 Tpr ENSMUST00000138718 - NO_TRANSLATION retained_intron ENSMUSG00000006005 Tpr ENSMUST00000152967 - NO_TRANSLATION retained_intron ENSMUSG00000006005 Tpr ENSMUST00000147769 - NO_TRANSLATION retained_intron ENSMUSG00000006005 Tpr ENSMUST00000130779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006005 Tpr ENSMUST00000128417 - NO_TRANSLATION retained_intron ENSMUSG00000055567 Unc80 ENSMUST00000061620 ENSMUSP00000053692 TRANSLATION protein_coding - CCDS48283.1 1 3326.0 0.0 0.0 6.8 304.1 0.0 -4,-5 1.0 31 1.682 PRINCIPAL:4 ENSMUSG00000055567 Unc80 ENSMUST00000114008 ENSMUSP00000109641 TRANSLATION nonsense_mediated_decay - - 2 298.0 0.0 0.0 0.0 304.1 0.0 -4,-5 0.0543 2 -2.0 MINOR ENSMUSG00000055567 Unc80 ENSMUST00000212557 ENSMUSP00000148517 TRANSLATION protein_coding - - 5 3258.0 0.0 0.0 7.9 304.1 0.0 -4,-5 0.9533 31 2.0 ALTERNATIVE:1 ENSMUSG00000055567 Unc80 ENSMUST00000152844 ENSMUSP00000117070 TRANSLATION protein_coding start - 1 281.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0014 1 -2.0 MINOR ENSMUSG00000055567 Unc80 ENSMUST00000187179 - NO_TRANSLATION retained_intron ENSMUSG00000055567 Unc80 ENSMUST00000136727 - NO_TRANSLATION retained_intron ENSMUSG00000073678 Pgap1 ENSMUST00000189506 - NO_TRANSLATION retained_intron ENSMUSG00000073678 Pgap1 ENSMUST00000185817 - NO_TRANSLATION retained_intron ENSMUSG00000073678 Pgap1 ENSMUST00000187949 - NO_TRANSLATION retained_intron ENSMUSG00000073678 Pgap1 ENSMUST00000097739 ENSMUSP00000095346 TRANSLATION protein_coding - CCDS48260.1 5 922.0 0.0 1.35 10.3 270.4 0.0 -1,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000026478 Lamc1 ENSMUST00000160515 - NO_TRANSLATION retained_intron ENSMUSG00000026478 Lamc1 ENSMUST00000163011 ENSMUSP00000124216 TRANSLATION nonsense_mediated_decay start - 5 125.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026478 Lamc1 ENSMUST00000027752 ENSMUSP00000027752 TRANSLATION protein_coding - CCDS15370.1 1 1607.0 6.0 14.202 7.6 744.7 0.0 3,-2 1.0 55 20.0 PRINCIPAL:1 ENSMUSG00000026478 Lamc1 ENSMUST00000161744 ENSMUSP00000124662 TRANSLATION protein_coding start - 5 104.0 0.0 0.65 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026478 Lamc1 ENSMUST00000159251 - NO_TRANSLATION retained_intron ENSMUSG00000032997 Chpf ENSMUST00000079205 ENSMUSP00000078199 TRANSLATION protein_coding - CCDS15074.1 1 774.0 0.0 5.0 10.6 503.5 0.0 -3,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000032997 Chpf ENSMUST00000124042 ENSMUSP00000122057 TRANSLATION nonsense_mediated_decay - - 5 113.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000032997 Chpf ENSMUST00000138683 ENSMUSP00000117253 TRANSLATION nonsense_mediated_decay - - 1 106.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000032997 Chpf ENSMUST00000094818 ENSMUSP00000092412 TRANSLATION protein_coding - CCDS15075.1 1 612.0 0.0 4.0 3.3 503.5 0.0 -4,-5 0.3198 6 10.722 MINOR ENSMUSG00000032997 Chpf ENSMUST00000143496 - NO_TRANSLATION retained_intron ENSMUSG00000039318 Rab3gap2 ENSMUST00000194740 ENSMUSP00000141608 TRANSLATION protein_coding - - 5 1367.0 0.0 0.0 2.2 1321.0 0.0 -4,-5 0.2368 28 4.776 MINOR ENSMUSG00000039318 Rab3gap2 ENSMUST00000195042 - NO_TRANSLATION retained_intron ENSMUSG00000039318 Rab3gap2 ENSMUST00000193482 - NO_TRANSLATION retained_intron ENSMUSG00000039318 Rab3gap2 ENSMUST00000195534 - NO_TRANSLATION retained_intron ENSMUSG00000039318 Rab3gap2 ENSMUST00000069652 ENSMUSP00000066325 TRANSLATION protein_coding - CCDS48478.1 5 1387.0 0.0 0.0 8.8 1349.1 0.0 -4,-5 1.0 28 9.0 PRINCIPAL:1 ENSMUSG00000039318 Rab3gap2 ENSMUST00000191966 - NO_TRANSLATION retained_intron ENSMUSG00000026339 Ccdc93 ENSMUST00000128924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026339 Ccdc93 ENSMUST00000036025 ENSMUSP00000043442 TRANSLATION protein_coding - CCDS15237.1 1 629.0 0.0 0.0 7.0 259.1 0.0 -4,-5 1.0 21 4.0 PRINCIPAL:3 ENSMUSG00000026339 Ccdc93 ENSMUST00000156459 - NO_TRANSLATION retained_intron ENSMUSG00000026339 Ccdc93 ENSMUST00000152959 - NO_TRANSLATION retained_intron ENSMUSG00000026339 Ccdc93 ENSMUST00000155673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026339 Ccdc93 ENSMUST00000112621 ENSMUSP00000108240 TRANSLATION protein_coding - CCDS15238.2 1 628.0 0.0 0.0 7.0 259.1 0.0 -4,-5 0.992 20 4.0 ALTERNATIVE:1 ENSMUSG00000103711 Tstd1 ENSMUST00000171362 ENSMUSP00000132771 TRANSLATION protein_coding - CCDS48443.1 2 133.0 0.0 2.875 0.4 51.4 0.0 -4,0 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000103711 Tstd1 ENSMUST00000194029 - NO_TRANSLATION retained_intron ENSMUSG00000103711 Tstd1 ENSMUST00000193060 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025968 Ndufs1 ENSMUST00000190095 - NO_TRANSLATION retained_intron ENSMUSG00000025968 Ndufs1 ENSMUST00000168099 ENSMUSP00000126621 TRANSLATION protein_coding - CCDS14996.1 1 727.0 12.0 17.57 30.1 355.0 0.0 -4,-1 1.0 37 22.0 PRINCIPAL:1 ENSMUSG00000025968 Ndufs1 ENSMUST00000185827 - NO_TRANSLATION retained_intron ENSMUSG00000025968 Ndufs1 ENSMUST00000186569 - NO_TRANSLATION retained_intron ENSMUSG00000025968 Ndufs1 ENSMUST00000027111 ENSMUSP00000027111 TRANSLATION protein_coding - CCDS14996.1 1 727.0 12.0 17.57 30.1 355.0 0.0 -4,-1 1.0 37 22.0 PRINCIPAL:1 ENSMUSG00000025968 Ndufs1 ENSMUST00000185412 ENSMUSP00000140467 TRANSLATION protein_coding stop - 5 79.0 0.0 1.75 0.0 31.1 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000025968 Ndufs1 ENSMUST00000185847 ENSMUSP00000141190 TRANSLATION protein_coding stop - 5 61.0 0.0 1.5 0.0 22.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000025968 Ndufs1 ENSMUST00000187835 - NO_TRANSLATION retained_intron ENSMUSG00000025968 Ndufs1 ENSMUST00000185732 ENSMUSP00000140307 TRANSLATION protein_coding stop - 5 118.0 0.0 2.83 0.0 41.8 0.0 -4,-1 0.0 6 -2.0 MINOR ENSMUSG00000025968 Ndufs1 ENSMUST00000187756 ENSMUSP00000140072 TRANSLATION nonsense_mediated_decay start - 3 62.0 0.0 1.75 0.0 26.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025968 Ndufs1 ENSMUST00000140612 - NO_TRANSLATION retained_intron ENSMUSG00000025968 Ndufs1 ENSMUST00000188370 ENSMUSP00000139664 TRANSLATION protein_coding stop - 5 135.0 7.0 3.08 0.0 41.0 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000025968 Ndufs1 ENSMUST00000189664 ENSMUSP00000140819 TRANSLATION protein_coding stop - 3 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026558 Uck2 ENSMUST00000192269 ENSMUSP00000142172 TRANSLATION protein_coding start/stop - 2 187.0 25.0 4.38 0.0 150.5 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000026558 Uck2 ENSMUST00000193579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026558 Uck2 ENSMUST00000027839 ENSMUSP00000027839 TRANSLATION protein_coding start - 3 250.0 21.0 5.38 0.0 163.8 0.0 -4,-7 0.0129 4 -2.0 MINOR ENSMUSG00000026558 Uck2 ENSMUST00000195443 ENSMUSP00000141986 TRANSLATION protein_coding start - 3 194.0 10.0 4.38 0.0 131.6 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000026558 Uck2 ENSMUST00000053686 ENSMUSP00000060202 TRANSLATION protein_coding - CCDS15455.1 1 261.0 26.0 6.18 27.9 182.8 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000026558 Uck2 ENSMUST00000192702 ENSMUSP00000141216 TRANSLATION nonsense_mediated_decay - - 5 130.0 20.0 2.866 0.0 73.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026558 Uck2 ENSMUST00000191745 ENSMUSP00000141787 TRANSLATION nonsense_mediated_decay - - 3 74.0 7.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070524 Fcrlb ENSMUST00000094337 ENSMUSP00000091895 TRANSLATION protein_coding - CCDS15475.1 1 427.0 0.0 2.06 0.4 71.8 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000005677 Nr1i3 ENSMUST00000075469 ENSMUSP00000074915 TRANSLATION protein_coding - CCDS56654.1 1 286.0 8.0 6.33 0.0 127.8 0.0 -4,-5 0.0045 - 9.338 MINOR ENSMUSG00000005677 Nr1i3 ENSMUST00000133075 ENSMUSP00000137852 TRANSLATION nonsense_mediated_decay - - 1 95.0 4.0 1.0 0.0 48.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005677 Nr1i3 ENSMUST00000137298 - NO_TRANSLATION retained_intron ENSMUSG00000005677 Nr1i3 ENSMUST00000149404 - NO_TRANSLATION retained_intron ENSMUSG00000005677 Nr1i3 ENSMUST00000111328 ENSMUSP00000106960 TRANSLATION protein_coding - CCDS56655.1 1 357.0 8.0 8.66 0.0 156.6 0.0 -4,-5 0.5247 - 14.0 ALTERNATIVE:2 ENSMUSG00000005677 Nr1i3 ENSMUST00000152865 - NO_TRANSLATION retained_intron ENSMUSG00000005677 Nr1i3 ENSMUST00000005820 ENSMUSP00000005820 TRANSLATION protein_coding - CCDS15480.1 1 358.0 8.0 8.66 0.4 158.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000005677 Nr1i3 ENSMUST00000155126 ENSMUSP00000137683 TRANSLATION protein_coding - - 2 221.0 0.0 5.66 0.0 61.8 0.0 -4,-7 0.0006 - 0.0 MINOR ENSMUSG00000026429 Ube2t ENSMUST00000223886 ENSMUSP00000152910 TRANSLATION nonsense_mediated_decay - - - 43.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026429 Ube2t ENSMUST00000139617 - NO_TRANSLATION retained_intron ENSMUSG00000026429 Ube2t ENSMUST00000027687 ENSMUSP00000027687 TRANSLATION protein_coding - CCDS15313.1 1 204.0 0.0 4.53 2.5 139.4 0.0 -4,-6 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000026429 Ube2t ENSMUST00000185369 - NO_TRANSLATION retained_intron ENSMUSG00000026429 Ube2t ENSMUST00000188177 ENSMUSP00000139929 TRANSLATION protein_coding start - 5 74.0 0.0 0.95 0.0 28.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026705 Klhl20 ENSMUST00000111611 ENSMUSP00000107238 TRANSLATION protein_coding - CCDS35748.1 1 604.0 0.0 10.75 2.2 547.9 0.0 -4,-6 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000026705 Klhl20 ENSMUST00000117467 ENSMUSP00000114044 TRANSLATION nonsense_mediated_decay - CCDS35748.1 1 604.0 0.0 10.75 2.2 547.9 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000026705 Klhl20 ENSMUST00000140905 - NO_TRANSLATION retained_intron ENSMUSG00000026705 Klhl20 ENSMUST00000145736 - NO_TRANSLATION retained_intron ENSMUSG00000026705 Klhl20 ENSMUST00000195584 ENSMUSP00000141213 TRANSLATION nonsense_mediated_decay start - 1 95.0 0.0 2.75 0.0 76.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026705 Klhl20 ENSMUST00000148952 - NO_TRANSLATION retained_intron ENSMUSG00000026705 Klhl20 ENSMUST00000192890 - NO_TRANSLATION retained_intron ENSMUSG00000042305 Tmem183a ENSMUST00000191237 ENSMUSP00000139821 TRANSLATION nonsense_mediated_decay - - 5 235.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0517 - -2.0 MINOR ENSMUSG00000042305 Tmem183a ENSMUST00000188205 - NO_TRANSLATION retained_intron ENSMUSG00000042305 Tmem183a ENSMUST00000189572 - NO_TRANSLATION retained_intron ENSMUSG00000042305 Tmem183a ENSMUST00000185903 ENSMUSP00000141012 TRANSLATION protein_coding start/stop - 3 111.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.009 - -2.0 MINOR ENSMUSG00000042305 Tmem183a ENSMUST00000049470 ENSMUSP00000046786 TRANSLATION protein_coding - CCDS35714.1 1 375.0 0.0 0.0 11.1 0.0 0.0 -4,-6 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000067653 Ankrd23 ENSMUST00000193991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067653 Ankrd23 ENSMUST00000054665 ENSMUSP00000061168 TRANSLATION protein_coding - CCDS14882.1 1 306.0 0.0 5.982 11.4 76.8 0.0 -4,-5 1.0 - 13.584 PRINCIPAL:1 ENSMUSG00000067653 Ankrd23 ENSMUST00000194853 ENSMUSP00000141541 TRANSLATION protein_coding - - 1 273.0 0.0 4.982 0.0 56.0 0.0 -4,-5 0.0078 - 7.338 MINOR ENSMUSG00000067653 Ankrd23 ENSMUST00000193083 ENSMUSP00000141394 TRANSLATION protein_coding - CCDS78564.1 1 192.0 0.0 5.75 0.0 100.4 0.0 -4,-5 0.1011 - 11.538 MINOR ENSMUSG00000041684 Bivm ENSMUST00000138521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041684 Bivm ENSMUST00000186280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041684 Bivm ENSMUST00000155917 ENSMUSP00000140572 TRANSLATION protein_coding stop - 2 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0105 - -2.0 MINOR ENSMUSG00000041684 Bivm ENSMUST00000129068 ENSMUSP00000140490 TRANSLATION protein_coding stop - 3 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0517 - -2.0 MINOR ENSMUSG00000041684 Bivm ENSMUST00000114709 ENSMUSP00000110357 TRANSLATION protein_coding - CCDS14930.1 1 502.0 0.0 6.45 15.5 0.0 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000041684 Bivm ENSMUST00000035991 ENSMUSP00000041964 TRANSLATION protein_coding - CCDS14930.1 1 502.0 0.0 6.45 15.5 0.0 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000041782 Lad1 ENSMUST00000185756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041782 Lad1 ENSMUST00000038760 ENSMUSP00000044630 TRANSLATION protein_coding - CCDS35723.1 1 528.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.8829 19 0.0 PRINCIPAL:1 ENSMUSG00000041782 Lad1 ENSMUST00000190773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026200 Glb1l ENSMUST00000132507 - NO_TRANSLATION retained_intron ENSMUSG00000026200 Glb1l ENSMUST00000185448 ENSMUSP00000140820 TRANSLATION protein_coding stop - 3 188.0 8.0 4.08 0.0 240.5 0.0 3,-2 0.0006 2 -2.0 MINOR ENSMUSG00000026200 Glb1l ENSMUST00000186148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026200 Glb1l ENSMUST00000186173 ENSMUSP00000139780 TRANSLATION protein_coding start - 5 551.0 11.0 9.93 0.0 295.9 0.0 3,-2 0.0047 9 -2.0 MINOR ENSMUSG00000026200 Glb1l ENSMUST00000131408 - NO_TRANSLATION retained_intron ENSMUSG00000026200 Glb1l ENSMUST00000143193 - NO_TRANSLATION retained_intron ENSMUSG00000026200 Glb1l ENSMUST00000155716 ENSMUSP00000136285 TRANSLATION nonsense_mediated_decay - CCDS48291.1 1 646.0 13.0 12.06 0.1 403.6 0.0 3,-2 1.0 9 -2.0 MINOR ENSMUSG00000026200 Glb1l ENSMUST00000189663 ENSMUSP00000139732 TRANSLATION nonsense_mediated_decay start - 5 18.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026200 Glb1l ENSMUST00000185449 - NO_TRANSLATION retained_intron ENSMUSG00000026200 Glb1l ENSMUST00000153584 - NO_TRANSLATION retained_intron ENSMUSG00000026200 Glb1l ENSMUST00000146713 - NO_TRANSLATION retained_intron ENSMUSG00000026200 Glb1l ENSMUST00000113623 ENSMUSP00000109253 TRANSLATION protein_coding - CCDS48291.1 5 646.0 13.0 12.06 0.1 403.6 0.0 3,-2 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000026237 Nmur1 ENSMUST00000027440 ENSMUSP00000027440 TRANSLATION protein_coding start CCDS83570.1 1 405.0 0.0 3.8 1.0 168.3 10.0 -4,-7 0.4503 - -2.0 MINOR ENSMUSG00000026237 Nmur1 ENSMUST00000212541 ENSMUSP00000148301 TRANSLATION protein_coding - - 5 372.0 0.0 3.0 0.0 168.3 10.0 1,-4 0.0593 - 10.398 MINOR ENSMUSG00000026237 Nmur1 ENSMUST00000212614 ENSMUSP00000148827 TRANSLATION protein_coding stop - 3 65.0 0.0 1.0 0.0 42.1 5.0 1,-4 0.0052 - -2.0 MINOR ENSMUSG00000026237 Nmur1 ENSMUST00000212058 ENSMUSP00000148767 TRANSLATION protein_coding - CCDS15119.2 5 428.0 0.0 3.8 4.5 168.3 10.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061816 Myl1 ENSMUST00000120415 ENSMUSP00000112880 TRANSLATION protein_coding - - 1 161.0 9.0 3.83 0.0 0.0 0.0 -4,-5 0.0066 11 8.94 MINOR ENSMUSG00000061816 Myl1 ENSMUST00000151328 - NO_TRANSLATION retained_intron ENSMUSG00000061816 Myl1 ENSMUST00000160100 ENSMUSP00000125748 TRANSLATION protein_coding stop - 3 124.0 0.0 2.28 0.0 0.0 0.0 -4,-6 0.0025 14 -2.0 MINOR ENSMUSG00000061816 Myl1 ENSMUST00000186346 - NO_TRANSLATION retained_intron ENSMUSG00000061816 Myl1 ENSMUST00000150542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061816 Myl1 ENSMUST00000119429 ENSMUSP00000112861 TRANSLATION protein_coding - CCDS48284.1 1 150.0 12.0 4.16 33.9 0.0 0.0 -4,-5 1.0 12 15.598 PRINCIPAL:1 ENSMUSG00000061816 Myl1 ENSMUST00000027151 ENSMUSP00000027151 TRANSLATION protein_coding - CCDS15024.1 1 188.0 12.0 4.36 15.2 0.0 0.0 -4,-6 0.6683 16 13.728 MINOR ENSMUSG00000061816 Myl1 ENSMUST00000186202 ENSMUSP00000140834 TRANSLATION protein_coding - - 5 92.0 12.0 2.83 0.0 0.0 0.0 -4,-5 0.0058 4 8.94 MINOR ENSMUSG00000026308 Klhl30 ENSMUST00000027533 ENSMUSP00000027533 TRANSLATION protein_coding - CCDS15161.1 1 581.0 0.0 3.73 6.2 203.0 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000026289 Atg16l1 ENSMUST00000151037 - NO_TRANSLATION retained_intron ENSMUSG00000026289 Atg16l1 ENSMUST00000129431 - NO_TRANSLATION retained_intron ENSMUSG00000026289 Atg16l1 ENSMUST00000027512 ENSMUSP00000027512 TRANSLATION protein_coding - CCDS15136.1 1 607.0 0.0 10.0 22.2 244.0 0.0 -4,-1 1.0 18 12.0 PRINCIPAL:3 ENSMUSG00000026289 Atg16l1 ENSMUST00000134603 - NO_TRANSLATION retained_intron ENSMUSG00000026289 Atg16l1 ENSMUST00000133072 - NO_TRANSLATION retained_intron ENSMUSG00000026289 Atg16l1 ENSMUST00000113186 ENSMUSP00000108811 TRANSLATION protein_coding - CCDS56638.1 1 588.0 0.0 10.0 21.0 244.0 0.0 -4,-1 0.9621 17 11.772 ALTERNATIVE:1 ENSMUSG00000026289 Atg16l1 ENSMUST00000113190 ENSMUSP00000108815 TRANSLATION protein_coding - CCDS56637.1 1 623.0 0.0 10.0 19.9 244.0 0.0 -4,-1 0.9584 17 11.568 ALTERNATIVE:1 ENSMUSG00000026289 Atg16l1 ENSMUST00000139628 - NO_TRANSLATION retained_intron ENSMUSG00000026289 Atg16l1 ENSMUST00000137638 - NO_TRANSLATION retained_intron ENSMUSG00000026289 Atg16l1 ENSMUST00000127884 - NO_TRANSLATION retained_intron ENSMUSG00000026289 Atg16l1 ENSMUST00000144047 ENSMUSP00000120955 TRANSLATION protein_coding stop - 5 154.0 0.0 1.0 0.0 132.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000037447 Arid5a ENSMUST00000126413 ENSMUSP00000115490 TRANSLATION protein_coding stop - 2 256.0 0.0 3.25 0.0 59.1 0.0 -4,-5 0.0251 2 -2.0 MINOR ENSMUSG00000037447 Arid5a ENSMUST00000145179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037447 Arid5a ENSMUST00000116629 ENSMUSP00000136037 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037447 Arid5a ENSMUST00000147123 - NO_TRANSLATION retained_intron ENSMUSG00000037447 Arid5a ENSMUST00000097778 ENSMUSP00000095385 TRANSLATION protein_coding - CCDS78560.1 1 619.0 0.0 3.25 0.0 59.1 0.0 -4,-6 0.2403 4 8.0 ALTERNATIVE:2 ENSMUSG00000037447 Arid5a ENSMUST00000142319 ENSMUSP00000119953 TRANSLATION protein_coding stop - 5 120.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037447 Arid5a ENSMUST00000150747 - NO_TRANSLATION retained_intron ENSMUSG00000037447 Arid5a ENSMUST00000192874 - NO_TRANSLATION retained_intron ENSMUSG00000037447 Arid5a ENSMUST00000115031 ENSMUSP00000110683 TRANSLATION protein_coding - - 2 684.0 0.0 3.25 0.0 30.5 0.0 -4,-5 0.026 4 6.0 MINOR ENSMUSG00000037447 Arid5a ENSMUST00000141121 - NO_TRANSLATION retained_intron ENSMUSG00000037447 Arid5a ENSMUST00000137906 ENSMUSP00000117810 TRANSLATION protein_coding - CCDS14876.1 1 532.0 0.0 1.75 0.1 0.0 0.0 -4,-5 0.0246 4 3.0 MINOR ENSMUSG00000037447 Arid5a ENSMUST00000124280 - NO_TRANSLATION retained_intron ENSMUSG00000037447 Arid5a ENSMUST00000140218 - NO_TRANSLATION retained_intron ENSMUSG00000037447 Arid5a ENSMUST00000115032 ENSMUSP00000110684 TRANSLATION protein_coding - CCDS48239.1 1 590.0 0.0 3.25 1.8 59.1 0.0 -4,-5 1.0 4 8.381 PRINCIPAL:2 ENSMUSG00000037447 Arid5a ENSMUST00000115029 ENSMUSP00000110681 TRANSLATION protein_coding - CCDS69878.1 3 431.0 0.0 0.0 3.1 0.0 0.0 -4,-5 0.3703 3 1.0 MINOR ENSMUSG00000036815 Dpp10 ENSMUST00000187286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036815 Dpp10 ENSMUST00000140361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036815 Dpp10 ENSMUST00000112603 ENSMUSP00000108222 TRANSLATION protein_coding - - 5 789.0 0.0 19.75 6.7 531.4 1.0 -4,-7 0.6529 25 9.752 MINOR ENSMUSG00000036815 Dpp10 ENSMUST00000187202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036815 Dpp10 ENSMUST00000112606 ENSMUSP00000108225 TRANSLATION protein_coding - CCDS15241.2 1 800.0 0.0 19.75 14.0 531.4 1.0 -4,-7 1.0 24 12.0 PRINCIPAL:3 ENSMUSG00000036815 Dpp10 ENSMUST00000239072 ENSMUSP00000159007 TRANSLATION protein_coding - - - 796.0 0.0 19.75 13.6 531.4 1.0 -4,-6 0.8139 23 11.876 ALTERNATIVE:1 ENSMUSG00000026435 Slc45a3 ENSMUST00000027695 ENSMUSP00000027695 TRANSLATION protein_coding - CCDS15278.1 1 553.0 0.0 1.38 10.7 42.1 11.0 3,-1 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026435 Slc45a3 ENSMUST00000185387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026435 Slc45a3 ENSMUST00000190322 ENSMUSP00000140767 TRANSLATION protein_coding stop - 3 221.0 0.0 0.88 0.0 33.8 6.0 3,-1 0.0078 - -2.0 MINOR ENSMUSG00000026435 Slc45a3 ENSMUST00000177943 ENSMUSP00000136190 TRANSLATION protein_coding - CCDS15278.1 1 553.0 0.0 1.38 10.7 42.1 11.0 3,-1 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026175 Vil1 ENSMUST00000163018 - NO_TRANSLATION retained_intron ENSMUSG00000026175 Vil1 ENSMUST00000161087 - NO_TRANSLATION retained_intron ENSMUSG00000026175 Vil1 ENSMUST00000027366 ENSMUSP00000027366 TRANSLATION protein_coding - CCDS15049.1 1 827.0 21.0 16.25 23.3 393.6 0.0 -4,-6 1.0 38 22.0 PRINCIPAL:1 ENSMUSG00000026175 Vil1 ENSMUST00000159749 ENSMUSP00000123786 TRANSLATION protein_coding start/stop - 5 248.0 8.0 4.78 0.0 117.1 0.0 -4,-5 0.0004 13 -2.0 MINOR ENSMUSG00000052726 Kcnt2 ENSMUST00000145077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052726 Kcnt2 ENSMUST00000239229 ENSMUSP00000159210 TRANSLATION protein_coding stop - - 54.0 0.0 0.75 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000052726 Kcnt2 ENSMUST00000119786 ENSMUSP00000113535 TRANSLATION protein_coding - - 5 1068.0 0.0 12.85 2.4 96.4 3.0 -4,-6 0.0908 10 5.108 MINOR ENSMUSG00000052726 Kcnt2 ENSMUST00000120796 ENSMUSP00000113333 TRANSLATION protein_coding - CCDS48389.1 5 1135.0 0.0 13.85 13.7 155.4 3.0 -4,-6 1.0 11 12.0 PRINCIPAL:4 ENSMUSG00000052726 Kcnt2 ENSMUST00000120709 ENSMUSP00000112887 TRANSLATION protein_coding - - 5 1111.0 0.0 13.85 12.4 155.4 3.0 -4,-6 0.8181 11 11.592 ALTERNATIVE:1 ENSMUSG00000052726 Kcnt2 ENSMUST00000192840 - NO_TRANSLATION retained_intron ENSMUSG00000052726 Kcnt2 ENSMUST00000193606 ENSMUSP00000141947 TRANSLATION nonsense_mediated_decay start - 3 71.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033569 Adgrb3 ENSMUST00000126096 - NO_TRANSLATION retained_intron ENSMUSG00000033569 Adgrb3 ENSMUST00000153568 - NO_TRANSLATION retained_intron ENSMUSG00000033569 Adgrb3 ENSMUST00000189254 - NO_TRANSLATION retained_intron ENSMUSG00000033569 Adgrb3 ENSMUST00000190202 - NO_TRANSLATION retained_intron ENSMUSG00000033569 Adgrb3 ENSMUST00000135518 ENSMUSP00000119804 TRANSLATION protein_coding - CCDS14855.1 5 1522.0 8.0 17.804 26.5 567.7 15.0 -1,-5 1.0 20 21.892 PRINCIPAL:1 ENSMUSG00000033569 Adgrb3 ENSMUST00000154102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033569 Adgrb3 ENSMUST00000041838 ENSMUSP00000035612 TRANSLATION protein_coding - CCDS14855.1 1 1522.0 8.0 17.804 26.5 567.7 15.0 -1,-5 1.0 20 21.892 PRINCIPAL:1 ENSMUSG00000033569 Adgrb3 ENSMUST00000134022 - NO_TRANSLATION retained_intron ENSMUSG00000033569 Adgrb3 ENSMUST00000126626 ENSMUSP00000115442 TRANSLATION protein_coding - - 1 652.0 0.0 7.41 0.0 199.7 14.0 -3,-5 0.0055 12 0.0 MINOR ENSMUSG00000033569 Adgrb3 ENSMUST00000146592 ENSMUSP00000116759 TRANSLATION protein_coding start - 1 1282.0 8.0 17.644 0.0 569.5 14.0 -4,-6 0.2379 19 -2.0 MINOR ENSMUSG00000033569 Adgrb3 ENSMUST00000151309 ENSMUSP00000116231 TRANSLATION protein_coding - CCDS14855.1 1 1522.0 8.0 17.804 26.5 567.7 15.0 -1,-5 1.0 20 21.892 PRINCIPAL:1 ENSMUSG00000026193 Fn1 ENSMUST00000188894 ENSMUSP00000140471 TRANSLATION protein_coding - CCDS78612.1 1 2386.0 5.0 43.582 0.4 1559.3 0.0 2,-3 0.6111 77 12.284 MINOR ENSMUSG00000026193 Fn1 ENSMUST00000189821 ENSMUSP00000139702 TRANSLATION protein_coding - CCDS78607.1 1 2176.0 5.0 42.15 0.4 1514.3 0.0 2,-3 0.4545 72 6.716 MINOR ENSMUSG00000026193 Fn1 ENSMUST00000186736 ENSMUSP00000140372 TRANSLATION protein_coding stop - 3 160.0 0.0 2.5 0.0 131.6 0.0 2,-3 0.0012 2 -2.0 MINOR ENSMUSG00000026193 Fn1 ENSMUST00000190780 ENSMUSP00000140816 TRANSLATION protein_coding - CCDS78608.1 1 2271.0 5.0 42.282 0.4 1514.3 0.0 2,-3 0.4728 73 6.98 MINOR ENSMUSG00000026193 Fn1 ENSMUST00000186613 ENSMUSP00000140153 TRANSLATION nonsense_mediated_decay start - 3 71.0 5.0 1.0 0.0 67.8 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000026193 Fn1 ENSMUST00000186575 - NO_TRANSLATION retained_intron ENSMUSG00000026193 Fn1 ENSMUST00000187627 ENSMUSP00000140955 TRANSLATION nonsense_mediated_decay start - 5 200.0 0.0 4.182 0.0 96.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026193 Fn1 ENSMUST00000188674 ENSMUSP00000140907 TRANSLATION protein_coding - CCDS78610.1 1 2266.0 5.0 43.15 0.4 1559.3 0.0 2,-3 0.5345 74 11.42 MINOR ENSMUSG00000026193 Fn1 ENSMUST00000189160 - NO_TRANSLATION retained_intron ENSMUSG00000026193 Fn1 ENSMUST00000187938 ENSMUSP00000140975 TRANSLATION protein_coding - CCDS78611.1 1 2361.0 5.0 43.282 0.4 1559.3 0.0 2,-3 0.5597 75 11.684 MINOR ENSMUSG00000026193 Fn1 ENSMUST00000186129 ENSMUSP00000141123 TRANSLATION protein_coding - CCDS78609.1 1 2296.0 5.0 42.582 0.4 1514.3 0.0 2,-3 0.5082 75 7.58 MINOR ENSMUSG00000026193 Fn1 ENSMUST00000186879 - NO_TRANSLATION retained_intron ENSMUSG00000026193 Fn1 ENSMUST00000185408 - NO_TRANSLATION retained_intron ENSMUSG00000026193 Fn1 ENSMUST00000186940 ENSMUSP00000140315 TRANSLATION protein_coding - - 1 383.0 0.0 6.75 0.0 288.3 0.0 2,-3 0.0012 12 0.0 MINOR ENSMUSG00000026193 Fn1 ENSMUST00000188092 - NO_TRANSLATION retained_intron ENSMUSG00000026193 Fn1 ENSMUST00000055226 ENSMUSP00000054499 TRANSLATION protein_coding - CCDS15031.1 1 2477.0 5.0 44.582 0.4 1604.6 0.0 2,-3 1.0 75 17.0 PRINCIPAL:1 ENSMUSG00000026193 Fn1 ENSMUST00000186985 ENSMUSP00000141193 TRANSLATION nonsense_mediated_decay start - 5 67.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000118640 Gm7582 ENSMUST00000239185 ENSMUSP00000159251 TRANSLATION protein_coding - - - 296.0 0.0 1.0 0.1 0.0 0.0 -4,-7 0.6725 - 6.0 PRINCIPAL:1 ENSMUSG00000026692 Fmo4 ENSMUST00000140031 - NO_TRANSLATION retained_intron ENSMUSG00000026692 Fmo4 ENSMUST00000028014 ENSMUSP00000028014 TRANSLATION protein_coding - CCDS15423.1 1 560.0 46.0 8.41 0.4 894.1 1.0 -3,-4 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000026692 Fmo4 ENSMUST00000144916 ENSMUSP00000119389 TRANSLATION protein_coding stop - 3 113.0 10.0 2.33 0.0 205.8 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026692 Fmo4 ENSMUST00000140274 ENSMUSP00000118476 TRANSLATION protein_coding stop - 3 99.0 17.0 2.33 0.0 186.7 0.0 -3,-4 0.0 2 -2.0 MINOR ENSMUSG00000026692 Fmo4 ENSMUST00000111525 ENSMUSP00000107150 TRANSLATION protein_coding - CCDS15423.1 5 560.0 46.0 8.41 0.4 894.1 1.0 -3,-4 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000026692 Fmo4 ENSMUST00000193508 - NO_TRANSLATION retained_intron ENSMUSG00000038855 Itpkb ENSMUST00000195043 - NO_TRANSLATION retained_intron ENSMUSG00000038855 Itpkb ENSMUST00000070181 ENSMUSP00000069851 TRANSLATION protein_coding - CCDS35808.1 1 942.0 23.0 5.75 0.4 143.0 0.0 -4,-6 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000079434 Neu2 ENSMUST00000165109 ENSMUSP00000126509 TRANSLATION protein_coding - CCDS15135.1 1 379.0 3.0 3.33 10.7 138.5 0.0 -4,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000079434 Neu2 ENSMUST00000163606 ENSMUSP00000127777 TRANSLATION protein_coding stop - 1 90.0 1.0 1.33 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000079434 Neu2 ENSMUST00000166259 ENSMUSP00000132513 TRANSLATION protein_coding - CCDS15135.1 1 379.0 3.0 3.33 10.7 138.5 0.0 -4,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000079434 Neu2 ENSMUST00000070898 ENSMUSP00000065439 TRANSLATION protein_coding - CCDS15135.1 1 379.0 3.0 3.33 10.7 138.5 0.0 -4,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000079434 Neu2 ENSMUST00000166055 ENSMUSP00000132099 TRANSLATION protein_coding stop - 3 111.0 1.0 2.33 0.0 38.7 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000079434 Neu2 ENSMUST00000172222 ENSMUSP00000131409 TRANSLATION protein_coding - CCDS48308.1 1 393.0 3.0 3.33 0.0 138.5 0.0 -4,-6 0.1727 10 15.0 MINOR ENSMUSG00000079434 Neu2 ENSMUST00000164128 ENSMUSP00000127913 TRANSLATION protein_coding - CCDS48309.1 1 385.0 3.0 3.33 0.0 138.5 0.0 -4,-5 0.233 10 15.0 MINOR ENSMUSG00000018417 Myo1b ENSMUST00000136701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018417 Myo1b ENSMUST00000144694 ENSMUSP00000114603 TRANSLATION protein_coding stop - 5 299.0 15.0 8.25 0.0 412.7 0.0 -4,-5 0.0009 6 -2.0 MINOR ENSMUSG00000018417 Myo1b ENSMUST00000135125 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018417 Myo1b ENSMUST00000114541 ENSMUSP00000110188 TRANSLATION protein_coding - - 5 1084.0 16.0 19.932 1.0 1066.9 0.0 -4,-5 0.2601 32 17.1 MINOR ENSMUSG00000018417 Myo1b ENSMUST00000126952 - NO_TRANSLATION retained_intron ENSMUSG00000018417 Myo1b ENSMUST00000136273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018417 Myo1b ENSMUST00000018561 ENSMUSP00000018561 TRANSLATION protein_coding - CCDS48254.1 1 1136.0 16.0 20.382 24.9 1066.9 0.0 -4,-5 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000018417 Myo1b ENSMUST00000046390 ENSMUSP00000040447 TRANSLATION protein_coding - CCDS14942.1 1 1107.0 16.0 20.232 18.4 1066.9 0.0 -4,-5 0.9638 32 20.612 MINOR ENSMUSG00000018417 Myo1b ENSMUST00000126657 - NO_TRANSLATION retained_intron ENSMUSG00000018417 Myo1b ENSMUST00000140930 - NO_TRANSLATION retained_intron ENSMUSG00000018417 Myo1b ENSMUST00000140731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018417 Myo1b ENSMUST00000151525 - NO_TRANSLATION retained_intron ENSMUSG00000018417 Myo1b ENSMUST00000123299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018417 Myo1b ENSMUST00000145367 - NO_TRANSLATION retained_intron ENSMUSG00000018417 Myo1b ENSMUST00000114537 ENSMUSP00000110184 TRANSLATION protein_coding - CCDS69887.1 5 1078.0 16.0 19.932 21.4 1066.9 0.0 -4,-5 0.9361 32 20.516 MINOR ENSMUSG00000070504 Fcrl6 ENSMUST00000193566 - NO_TRANSLATION retained_intron ENSMUSG00000070504 Fcrl6 ENSMUST00000193431 - NO_TRANSLATION retained_intron ENSMUSG00000070504 Fcrl6 ENSMUST00000094303 ENSMUSP00000091861 TRANSLATION protein_coding - CCDS48448.1 5 268.0 0.0 2.264 0.0 36.2 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040181 Fmo1 ENSMUST00000131058 ENSMUSP00000118534 TRANSLATION protein_coding stop - 2 221.0 27.0 4.5 0.0 421.6 0.0 -3,-5 0.0013 8 -2.0 MINOR ENSMUSG00000040181 Fmo1 ENSMUST00000143902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040181 Fmo1 ENSMUST00000134098 ENSMUSP00000117398 TRANSLATION protein_coding stop - 1 303.0 27.0 6.58 0.0 553.1 0.0 -3,-5 0.0042 15 -2.0 MINOR ENSMUSG00000040181 Fmo1 ENSMUST00000046049 ENSMUSP00000037259 TRANSLATION protein_coding - CCDS15424.1 1 532.0 34.0 9.33 19.8 919.8 0.0 -3,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000040181 Fmo1 ENSMUST00000111518 ENSMUSP00000107143 TRANSLATION protein_coding - - 1 182.0 25.0 3.3 0.0 303.8 0.0 -3,-5 0.0007 7 0.0 MINOR ENSMUSG00000040181 Fmo1 ENSMUST00000193766 - NO_TRANSLATION retained_intron ENSMUSG00000040181 Fmo1 ENSMUST00000136120 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040181 Fmo1 ENSMUST00000193078 ENSMUSP00000141210 TRANSLATION protein_coding stop - 5 229.0 27.0 4.83 0.0 436.5 0.0 -3,-5 0.0013 9 -2.0 MINOR ENSMUSG00000040713 Creg1 ENSMUST00000111432 ENSMUSP00000107060 TRANSLATION protein_coding - CCDS35759.1 1 220.0 0.0 3.33 3.4 192.1 0.0 2,-2 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000040713 Creg1 ENSMUST00000140769 ENSMUSP00000137087 TRANSLATION nonsense_mediated_decay - - 1 146.0 0.0 1.0 0.0 61.7 0.0 2,-2 0.0029 4 -2.0 MINOR ENSMUSG00000040713 Creg1 ENSMUST00000040298 ENSMUSP00000041234 TRANSLATION protein_coding - - 3 94.0 0.0 2.0 0.7 104.8 0.0 -4,-7 0.0286 2 4.104 MINOR ENSMUSG00000015829 Tnr ENSMUST00000111669 ENSMUSP00000107298 TRANSLATION protein_coding - CCDS15403.1 5 1358.0 7.0 17.04 22.7 680.5 0.0 -4,-7 1.0 34 22.0 PRINCIPAL:1 ENSMUSG00000015829 Tnr ENSMUST00000192457 ENSMUSP00000141509 TRANSLATION protein_coding start/stop - 5 181.0 0.0 2.0 0.0 45.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000015829 Tnr ENSMUST00000195199 - NO_TRANSLATION retained_intron ENSMUSG00000015829 Tnr ENSMUST00000192069 ENSMUSP00000141553 TRANSLATION protein_coding - CCDS15403.1 1 1358.0 7.0 17.04 22.7 680.5 0.0 -4,-7 1.0 34 22.0 PRINCIPAL:1 ENSMUSG00000015829 Tnr ENSMUST00000193325 ENSMUSP00000141752 TRANSLATION protein_coding stop - 3 98.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000033021 Gmppa ENSMUST00000140287 ENSMUSP00000121552 TRANSLATION protein_coding stop - 5 161.0 21.0 4.29 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000033021 Gmppa ENSMUST00000144874 ENSMUSP00000121418 TRANSLATION protein_coding stop - 5 216.0 23.0 5.318 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033021 Gmppa ENSMUST00000145166 ENSMUSP00000116754 TRANSLATION protein_coding stop - 1 91.0 11.0 2.99 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000033021 Gmppa ENSMUST00000131545 ENSMUSP00000120841 TRANSLATION protein_coding stop - 5 223.0 29.0 5.818 0.0 0.0 0.0 -4,-2 0.0006 2 -2.0 MINOR ENSMUSG00000033021 Gmppa ENSMUST00000135453 - NO_TRANSLATION retained_intron ENSMUSG00000033021 Gmppa ENSMUST00000188097 ENSMUSP00000139936 TRANSLATION nonsense_mediated_decay start - 5 150.0 15.0 3.79 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000033021 Gmppa ENSMUST00000141124 ENSMUSP00000116783 TRANSLATION protein_coding stop - 3 72.0 9.0 2.33 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000033021 Gmppa ENSMUST00000124539 - NO_TRANSLATION retained_intron ENSMUSG00000033021 Gmppa ENSMUST00000143730 ENSMUSP00000114375 TRANSLATION protein_coding stop - 3 196.0 27.0 5.04 0.0 0.0 0.0 -4,-2 0.0006 1 -2.0 MINOR ENSMUSG00000033021 Gmppa ENSMUST00000132291 - NO_TRANSLATION retained_intron ENSMUSG00000033021 Gmppa ENSMUST00000133418 ENSMUSP00000122443 TRANSLATION protein_coding stop - 5 220.0 29.0 5.7 0.0 0.0 0.0 -4,-2 0.0006 1 -2.0 MINOR ENSMUSG00000033021 Gmppa ENSMUST00000037796 ENSMUSP00000035564 TRANSLATION protein_coding - CCDS15072.1 1 420.0 32.0 11.068 30.6 29.2 0.0 -4,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000033021 Gmppa ENSMUST00000113584 ENSMUSP00000109214 TRANSLATION protein_coding - CCDS15072.1 5 420.0 32.0 11.068 30.6 29.2 0.0 -4,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000026360 Rgs2 ENSMUST00000027606 ENSMUSP00000139964 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026360 Rgs2 ENSMUST00000153527 ENSMUSP00000140548 TRANSLATION protein_coding - - 2 130.0 0.0 2.15 0.0 77.1 0.0 -4,-7 0.0 - 7.128 MINOR ENSMUSG00000026360 Rgs2 ENSMUST00000134817 - NO_TRANSLATION retained_intron ENSMUSG00000026360 Rgs2 ENSMUST00000127206 ENSMUSP00000115558 TRANSLATION protein_coding - CCDS15347.1 1 211.0 0.0 2.95 20.6 131.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000032719 Sbspon ENSMUST00000040695 ENSMUSP00000047730 TRANSLATION protein_coding - CCDS14828.1 1 264.0 3.0 0.165 8.5 0.0 0.0 3,-2 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000026098 Pms1 ENSMUST00000027267 ENSMUSP00000027267 TRANSLATION protein_coding - CCDS14951.1 1 917.0 14.0 4.874 0.4 184.9 0.0 -4,-7 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000026098 Pms1 ENSMUST00000126590 ENSMUSP00000120670 TRANSLATION protein_coding stop - 5 80.0 8.0 1.6 0.0 38.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026098 Pms1 ENSMUST00000128337 ENSMUSP00000115352 TRANSLATION protein_coding stop - 3 127.0 13.0 2.664 0.0 45.5 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000026098 Pms1 ENSMUST00000126412 ENSMUSP00000120340 TRANSLATION protein_coding stop - 2 42.0 2.0 0.8 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026098 Pms1 ENSMUST00000188890 - NO_TRANSLATION retained_intron ENSMUSG00000026098 Pms1 ENSMUST00000135246 ENSMUSP00000119632 TRANSLATION protein_coding stop - 1 669.0 14.0 4.874 0.0 184.9 0.0 -4,-7 0.0636 10 -2.0 MINOR ENSMUSG00000026098 Pms1 ENSMUST00000142922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026098 Pms1 ENSMUST00000133358 ENSMUSP00000122418 TRANSLATION protein_coding stop - 3 88.0 8.0 1.864 0.0 38.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000025955 Akr1cl ENSMUST00000159566 ENSMUSP00000123943 TRANSLATION nonsense_mediated_decay - - 5 156.0 13.0 3.122 0.0 71.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025955 Akr1cl ENSMUST00000069142 ENSMUSP00000063309 TRANSLATION protein_coding - CCDS48282.1 1 322.0 48.0 8.08 6.9 196.7 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000025955 Akr1cl ENSMUST00000160283 - NO_TRANSLATION retained_intron ENSMUSG00000025955 Akr1cl ENSMUST00000161313 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025955 Akr1cl ENSMUST00000159896 - NO_TRANSLATION retained_intron ENSMUSG00000025955 Akr1cl ENSMUST00000162800 ENSMUSP00000124333 TRANSLATION protein_coding - CCDS78599.1 1 291.0 43.0 7.33 0.0 188.9 0.0 -4,-5 0.0306 7 12.696 MINOR ENSMUSG00000037474 Dtl ENSMUST00000194064 - NO_TRANSLATION retained_intron ENSMUSG00000037474 Dtl ENSMUST00000193977 ENSMUSP00000142111 TRANSLATION nonsense_mediated_decay - - 2 124.0 0.0 1.432 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000037474 Dtl ENSMUST00000195765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037474 Dtl ENSMUST00000195650 ENSMUSP00000141218 TRANSLATION nonsense_mediated_decay - - 1 157.0 0.0 2.212 0.0 12.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000037474 Dtl ENSMUST00000027933 ENSMUSP00000027933 TRANSLATION protein_coding - CCDS15621.1 1 729.0 0.0 5.932 9.7 88.7 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000037474 Dtl ENSMUST00000192014 - NO_TRANSLATION retained_intron ENSMUSG00000026229 Psmd1 ENSMUST00000133480 - NO_TRANSLATION retained_intron ENSMUSG00000026229 Psmd1 ENSMUST00000143200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026229 Psmd1 ENSMUST00000027432 ENSMUSP00000027432 TRANSLATION protein_coding - CCDS15117.1 1 953.0 0.0 18.88 30.2 127.3 0.0 -4,-5 1.0 33 16.0 PRINCIPAL:1 ENSMUSG00000026229 Psmd1 ENSMUST00000149946 - NO_TRANSLATION retained_intron ENSMUSG00000026229 Psmd1 ENSMUST00000147807 - NO_TRANSLATION retained_intron ENSMUSG00000026229 Psmd1 ENSMUST00000127104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026229 Psmd1 ENSMUST00000139715 ENSMUSP00000122121 TRANSLATION nonsense_mediated_decay - - 5 48.0 0.0 1.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026229 Psmd1 ENSMUST00000152184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026229 Psmd1 ENSMUST00000189234 - NO_TRANSLATION retained_intron ENSMUSG00000056569 Mpz ENSMUST00000111334 ENSMUSP00000106966 TRANSLATION protein_coding - CCDS15479.1 1 248.0 0.0 3.6 1.7 190.0 1.0 3,-1 1.0 7 12.778 PRINCIPAL:1 ENSMUSG00000056569 Mpz ENSMUST00000070758 ENSMUSP00000066701 TRANSLATION protein_coding - CCDS15479.1 1 248.0 0.0 3.6 1.7 190.0 1.0 3,-1 1.0 7 12.778 PRINCIPAL:1 ENSMUSG00000056569 Mpz ENSMUST00000238908 ENSMUSP00000159037 TRANSLATION protein_coding - - - 312.0 0.0 3.6 1.9 190.0 1.0 3,-1 0.5921 - -2.0 MINOR ENSMUSG00000056569 Mpz ENSMUST00000149352 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056569 Mpz ENSMUST00000125565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056569 Mpz ENSMUST00000238940 ENSMUSP00000159043 TRANSLATION protein_coding - CCDS15479.1 - 248.0 0.0 3.6 1.7 190.0 1.0 3,-1 1.0 7 12.778 PRINCIPAL:1 ENSMUSG00000033557 Fam20b ENSMUST00000190878 - NO_TRANSLATION retained_intron ENSMUSG00000033557 Fam20b ENSMUST00000122424 ENSMUSP00000112534 TRANSLATION protein_coding - CCDS15395.1 5 409.0 13.0 6.3 36.9 287.4 0.0 1,-4 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000033557 Fam20b ENSMUST00000188941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033557 Fam20b ENSMUST00000086153 ENSMUSP00000083322 TRANSLATION protein_coding - CCDS15395.1 1 409.0 13.0 6.3 36.9 287.4 0.0 1,-4 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000033557 Fam20b ENSMUST00000147931 - NO_TRANSLATION retained_intron ENSMUSG00000026113 Inpp4a ENSMUST00000168546 ENSMUSP00000130443 TRANSLATION protein_coding - - 5 679.0 8.0 1.38 1.0 0.0 0.0 -4,-5 0.2053 16 12.0 MINOR ENSMUSG00000026113 Inpp4a ENSMUST00000132401 ENSMUSP00000123071 TRANSLATION protein_coding - - 5 972.0 8.0 1.38 10.7 0.0 0.0 -4,-2 0.7689 24 14.204 MINOR ENSMUSG00000026113 Inpp4a ENSMUST00000146676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026113 Inpp4a ENSMUST00000140264 ENSMUSP00000121107 TRANSLATION protein_coding - - 1 890.0 8.0 1.38 0.0 0.0 0.0 -4,-2 0.0973 22 12.0 MINOR ENSMUSG00000026113 Inpp4a ENSMUST00000114933 ENSMUSP00000110583 TRANSLATION protein_coding - CCDS35540.1 1 690.0 8.0 1.38 0.0 0.0 0.0 -4,-5 0.1816 17 12.0 MINOR ENSMUSG00000026113 Inpp4a ENSMUST00000193024 - NO_TRANSLATION retained_intron ENSMUSG00000026113 Inpp4a ENSMUST00000136846 ENSMUSP00000121518 TRANSLATION protein_coding - - 5 938.0 8.0 1.38 18.6 0.0 0.0 -4,-2 0.8564 23 16.0 ALTERNATIVE:1 ENSMUSG00000026113 Inpp4a ENSMUST00000123124 - NO_TRANSLATION retained_intron ENSMUSG00000026113 Inpp4a ENSMUST00000193774 ENSMUSP00000142118 TRANSLATION protein_coding - - 5 306.0 8.0 1.03 0.0 0.0 0.0 -4,-2 0.0319 7 10.476 MINOR ENSMUSG00000026113 Inpp4a ENSMUST00000058307 ENSMUSP00000057233 TRANSLATION protein_coding - CCDS78570.1 1 679.0 8.0 1.38 1.0 0.0 0.0 -4,-5 0.3095 17 12.0 MINOR ENSMUSG00000026113 Inpp4a ENSMUST00000137266 ENSMUSP00000121803 TRANSLATION protein_coding - CCDS69879.1 5 977.0 8.0 1.38 12.2 0.0 0.0 -4,-2 0.9459 23 14.544 MINOR ENSMUSG00000026113 Inpp4a ENSMUST00000132615 ENSMUSP00000115249 TRANSLATION protein_coding - - 5 954.0 8.0 1.38 18.6 0.0 0.0 -4,-2 0.8856 22 16.0 ALTERNATIVE:1 ENSMUSG00000026113 Inpp4a ENSMUST00000027287 ENSMUSP00000027287 TRANSLATION protein_coding - CCDS35539.1 5 939.0 8.0 1.38 18.6 0.0 0.0 -4,-2 1.0 24 16.0 PRINCIPAL:3 ENSMUSG00000036574 Tex44 ENSMUST00000046004 ENSMUSP00000136430 TRANSLATION protein_coding - CCDS56635.1 - 530.0 0.0 0.0 0.0 320.1 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000048814 Lonrf2 ENSMUST00000191724 - NO_TRANSLATION retained_intron ENSMUSG00000048814 Lonrf2 ENSMUST00000039612 ENSMUSP00000047372 TRANSLATION protein_coding - CCDS14900.1 1 518.0 8.0 6.295 1.0 120.2 0.0 -4,-5 0.0776 4 15.888 MINOR ENSMUSG00000048814 Lonrf2 ENSMUST00000147695 ENSMUSP00000117600 TRANSLATION protein_coding - - 5 754.0 8.0 6.545 0.1 147.1 0.0 -4,-5 0.78 8 18.0 PRINCIPAL:1 ENSMUSG00000038323 1700066M21Rik ENSMUST00000185952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038323 1700066M21Rik ENSMUST00000187255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038323 1700066M21Rik ENSMUST00000042734 ENSMUSP00000040240 TRANSLATION protein_coding - CCDS48264.1 1 365.0 0.0 0.0 0.8 373.5 0.0 2,-5 1.0 11 6.0 PRINCIPAL:1 ENSMUSG00000054545 Ugt1a6a ENSMUST00000113134 ENSMUSP00000108759 TRANSLATION protein_coding - CCDS48314.1 1 531.0 19.0 5.75 8.3 765.8 1.0 4,-1 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000054545 Ugt1a6a ENSMUST00000140092 ENSMUSP00000115642 TRANSLATION protein_coding stop - 3 166.0 17.0 3.75 0.0 324.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000054545 Ugt1a6a ENSMUST00000124852 - NO_TRANSLATION retained_intron ENSMUSG00000054545 Ugt1a6a ENSMUST00000014263 ENSMUSP00000014263 TRANSLATION protein_coding - CCDS48314.1 1 531.0 19.0 5.75 8.3 765.8 1.0 4,-1 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000001674 Ddx18 ENSMUST00000148809 - NO_TRANSLATION retained_intron ENSMUSG00000001674 Ddx18 ENSMUST00000134417 ENSMUSP00000114149 TRANSLATION protein_coding start/stop - 5 171.0 0.0 4.0 0.0 87.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000001674 Ddx18 ENSMUST00000131471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001674 Ddx18 ENSMUST00000001724 ENSMUSP00000001724 TRANSLATION protein_coding - CCDS15240.1 1 660.0 13.0 9.4 0.3 307.2 0.0 -4,-1 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000026565 Pou2f1 ENSMUST00000069609 ENSMUSP00000064000 TRANSLATION protein_coding - CCDS15444.1 1 758.0 0.0 3.6 8.7 190.1 0.0 -4,-5 1.0 2 11.0 PRINCIPAL:4 ENSMUSG00000026565 Pou2f1 ENSMUST00000177358 ENSMUSP00000135565 TRANSLATION protein_coding stop - 3 163.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026565 Pou2f1 ENSMUST00000082225 - NO_TRANSLATION retained_intron ENSMUSG00000026565 Pou2f1 ENSMUST00000159212 ENSMUSP00000125371 TRANSLATION protein_coding start - 5 580.0 0.0 3.6 0.0 190.1 0.0 -4,-7 0.0355 2 -2.0 MINOR ENSMUSG00000026565 Pou2f1 ENSMUST00000111427 ENSMUSP00000107056 TRANSLATION protein_coding - CCDS35761.1 2 782.0 0.0 3.6 0.0 190.1 0.0 -4,-5 0.2606 2 8.0 MINOR ENSMUSG00000026565 Pou2f1 ENSMUST00000184799 ENSMUSP00000139271 TRANSLATION protein_coding start - 1 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000026565 Pou2f1 ENSMUST00000111426 ENSMUSP00000107055 TRANSLATION protein_coding - - 5 758.0 0.0 3.6 0.0 190.1 0.0 -4,-5 0.3988 2 8.0 MINOR ENSMUSG00000026565 Pou2f1 ENSMUST00000160260 ENSMUSP00000124738 TRANSLATION protein_coding - CCDS35760.1 1 793.0 0.0 3.6 0.0 190.1 0.0 -4,-5 0.2425 2 8.0 MINOR ENSMUSG00000026565 Pou2f1 ENSMUST00000176942 - NO_TRANSLATION retained_intron ENSMUSG00000026565 Pou2f1 ENSMUST00000176101 - NO_TRANSLATION retained_intron ENSMUSG00000026565 Pou2f1 ENSMUST00000176800 ENSMUSP00000135329 TRANSLATION protein_coding stop - 1 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0198 - -2.0 MINOR ENSMUSG00000026565 Pou2f1 ENSMUST00000184643 ENSMUSP00000138962 TRANSLATION protein_coding - - 1 701.0 0.0 3.6 0.7 190.1 0.0 -4,-5 0.2114 2 8.0 MINOR ENSMUSG00000026565 Pou2f1 ENSMUST00000194366 ENSMUSP00000141618 TRANSLATION protein_coding start/stop - 1 74.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0019 - -2.0 MINOR ENSMUSG00000026565 Pou2f1 ENSMUST00000111429 ENSMUSP00000107057 TRANSLATION protein_coding - - 5 746.0 0.0 3.6 7.8 190.1 0.0 -4,-5 0.7783 2 10.649 ALTERNATIVE:1 ENSMUSG00000026565 Pou2f1 ENSMUST00000027850 ENSMUSP00000027850 TRANSLATION protein_coding - - 5 706.0 0.0 3.6 1.7 190.1 0.0 -4,-5 0.2764 2 8.273 MINOR ENSMUSG00000026565 Pou2f1 ENSMUST00000160908 ENSMUSP00000125444 TRANSLATION protein_coding - CCDS48430.1 1 769.0 0.0 3.6 7.3 190.1 0.0 -4,-5 0.9276 2 10.454 ALTERNATIVE:1 ENSMUSG00000026565 Pou2f1 ENSMUST00000176004 - NO_TRANSLATION retained_intron ENSMUSG00000026565 Pou2f1 ENSMUST00000177472 - NO_TRANSLATION retained_intron ENSMUSG00000007107 Atp1a4 ENSMUST00000193316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007107 Atp1a4 ENSMUST00000111243 ENSMUSP00000106874 TRANSLATION protein_coding - CCDS48446.1 5 1032.0 9.0 20.28 0.3 442.7 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000026271 Gpr35 ENSMUST00000185421 ENSMUSP00000139817 TRANSLATION protein_coding stop - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026271 Gpr35 ENSMUST00000186298 ENSMUSP00000139648 TRANSLATION protein_coding - CCDS15182.1 1 307.0 0.0 1.9 6.1 115.6 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026271 Gpr35 ENSMUST00000169198 ENSMUSP00000126914 TRANSLATION protein_coding - CCDS15182.1 1 307.0 0.0 1.9 6.1 115.6 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026271 Gpr35 ENSMUST00000027489 ENSMUSP00000027489 TRANSLATION protein_coding - - 1 91.0 0.0 0.4 0.0 0.0 1.0 4,-1 0.0048 - 1.266 MINOR ENSMUSG00000026271 Gpr35 ENSMUST00000064480 ENSMUSP00000070832 TRANSLATION protein_coding - CCDS15182.1 1 307.0 0.0 1.9 6.1 115.6 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026271 Gpr35 ENSMUST00000189697 ENSMUSP00000139787 TRANSLATION protein_coding stop - 3 147.0 0.0 1.1 0.0 74.6 4.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000025903 Lypla1 ENSMUST00000134384 ENSMUSP00000137104 TRANSLATION nonsense_mediated_decay - - 1 224.0 7.0 6.108 0.0 281.7 0.0 -4,-7 0.0244 4 -2.0 MINOR ENSMUSG00000025903 Lypla1 ENSMUST00000141278 - NO_TRANSLATION retained_intron ENSMUSG00000025903 Lypla1 ENSMUST00000027036 ENSMUSP00000027036 TRANSLATION protein_coding - CCDS14806.1 1 230.0 7.0 6.41 36.9 298.7 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000025903 Lypla1 ENSMUST00000137887 ENSMUSP00000119456 TRANSLATION protein_coding stop - 5 142.0 5.0 4.08 0.0 166.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000025903 Lypla1 ENSMUST00000150971 ENSMUSP00000137248 TRANSLATION protein_coding - - 1 221.0 7.0 6.075 0.0 279.9 0.0 -4,-7 0.0231 4 16.2 MINOR ENSMUSG00000025903 Lypla1 ENSMUST00000131119 ENSMUSP00000118453 TRANSLATION protein_coding stop - 3 142.0 4.0 3.75 0.0 183.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000025903 Lypla1 ENSMUST00000119612 ENSMUSP00000137647 TRANSLATION protein_coding - - 3 92.0 2.0 2.83 0.0 113.6 0.0 -4,-7 0.0 - 1.716 MINOR ENSMUSG00000025903 Lypla1 ENSMUST00000115529 ENSMUSP00000111191 TRANSLATION protein_coding - - 2 196.0 6.0 5.41 9.1 233.9 0.0 -4,-7 0.1147 2 12.16 MINOR ENSMUSG00000025938 Slco5a1 ENSMUST00000115402 ENSMUSP00000111061 TRANSLATION protein_coding - - 5 688.0 0.0 0.0 1.0 549.9 20.0 -4,-5 0.0314 1 0.0 MINOR ENSMUSG00000025938 Slco5a1 ENSMUST00000188454 ENSMUSP00000140091 TRANSLATION protein_coding - CCDS14821.2 5 850.0 0.0 0.0 4.9 657.4 22.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000025938 Slco5a1 ENSMUST00000136197 ENSMUSP00000139533 TRANSLATION protein_coding - - 1 658.0 0.0 0.0 0.0 515.6 18.0 -4,-5 0.0092 1 0.0 MINOR ENSMUSG00000025938 Slco5a1 ENSMUST00000146763 ENSMUSP00000139586 TRANSLATION protein_coding - - 1 401.0 0.0 0.0 0.0 264.8 11.0 -4,-5 0.0049 1 0.0 MINOR ENSMUSG00000025938 Slco5a1 ENSMUST00000191566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025938 Slco5a1 ENSMUST00000115403 ENSMUSP00000111062 TRANSLATION protein_coding - CCDS14821.2 5 850.0 0.0 0.0 4.9 657.4 22.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000025938 Slco5a1 ENSMUST00000147606 ENSMUSP00000140658 TRANSLATION protein_coding - - 1 478.0 0.0 0.0 0.0 385.5 16.0 -4,-5 0.0032 1 0.0 MINOR ENSMUSG00000025938 Slco5a1 ENSMUST00000133201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073609 D2hgdh ENSMUST00000112881 ENSMUSP00000108502 TRANSLATION protein_coding - CCDS78658.1 1 557.0 30.0 9.33 0.1 311.0 0.0 0,2 0.3619 5 14.0 ALTERNATIVE:2 ENSMUSG00000073609 D2hgdh ENSMUST00000189154 ENSMUSP00000140506 TRANSLATION protein_coding stop - 3 219.0 12.0 3.0 0.0 39.5 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000073609 D2hgdh ENSMUST00000149397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073609 D2hgdh ENSMUST00000141701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073609 D2hgdh ENSMUST00000097633 ENSMUSP00000095235 TRANSLATION protein_coding - CCDS15196.1 1 535.0 30.0 9.33 1.8 311.0 0.0 -4,0 1.0 5 15.0 PRINCIPAL:2 ENSMUSG00000073609 D2hgdh ENSMUST00000187321 ENSMUSP00000140181 TRANSLATION protein_coding stop - 3 50.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0005 - -2.0 MINOR ENSMUSG00000073609 D2hgdh ENSMUST00000186783 ENSMUSP00000139770 TRANSLATION nonsense_mediated_decay start - 1 37.0 5.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000073609 D2hgdh ENSMUST00000188532 ENSMUSP00000139812 TRANSLATION protein_coding start/stop - 5 77.0 5.0 1.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000051528 Or6k4 ENSMUST00000214751 ENSMUSP00000150840 TRANSLATION protein_coding - CCDS15538.1 5 315.0 0.0 1.0 9.7 209.3 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051528 Or6k4 ENSMUST00000053941 ENSMUSP00000054305 TRANSLATION protein_coding - CCDS15538.1 - 315.0 0.0 1.0 9.7 209.3 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033774 Npbwr1 ENSMUST00000044180 ENSMUSP00000046233 TRANSLATION protein_coding - CCDS48214.1 - 329.0 0.0 1.0 10.6 162.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073633 Fbxo36 ENSMUST00000139562 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073633 Fbxo36 ENSMUST00000097672 ENSMUSP00000095276 TRANSLATION protein_coding - CCDS35634.1 1 188.0 0.0 4.0 6.8 31.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000073633 Fbxo36 ENSMUST00000143656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073633 Fbxo36 ENSMUST00000151737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047528 Flacc1 ENSMUST00000191252 ENSMUSP00000140613 TRANSLATION nonsense_mediated_decay - - 1 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0132 - -2.0 MINOR ENSMUSG00000047528 Flacc1 ENSMUST00000055313 ENSMUSP00000062497 TRANSLATION protein_coding - CCDS35581.1 1 383.0 0.0 8.0 0.0 0.0 0.0 -4,-5 0.2128 2 6.0 ALTERNATIVE:2 ENSMUSG00000047528 Flacc1 ENSMUST00000185953 - NO_TRANSLATION retained_intron ENSMUSG00000047528 Flacc1 ENSMUST00000188839 - NO_TRANSLATION retained_intron ENSMUSG00000047528 Flacc1 ENSMUST00000188772 ENSMUSP00000140780 TRANSLATION protein_coding - - 1 328.0 0.0 6.0 0.0 0.0 0.0 -4,-5 0.0127 1 1.998 MINOR ENSMUSG00000047528 Flacc1 ENSMUST00000191565 ENSMUSP00000139420 TRANSLATION protein_coding - CCDS83544.1 1 423.0 0.0 8.0 2.0 0.0 0.0 -4,-5 1.0 2 7.0 PRINCIPAL:2 ENSMUSG00000026180 Cxcr2 ENSMUST00000106899 ENSMUSP00000102512 TRANSLATION protein_coding - CCDS15040.1 1 359.0 0.0 1.0 4.6 177.6 0.0 -4,-6 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000044768 Macir ENSMUST00000142234 ENSMUSP00000137803 TRANSLATION protein_coding stop - 2 134.0 0.0 0.0 0.0 235.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000044768 Macir ENSMUST00000053033 ENSMUSP00000051034 TRANSLATION protein_coding - CCDS15202.1 1 207.0 0.0 0.0 30.9 373.3 0.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000044768 Macir ENSMUST00000149927 ENSMUSP00000121997 TRANSLATION protein_coding - CCDS15202.1 1 207.0 0.0 0.0 30.9 373.3 0.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000044768 Macir ENSMUST00000153115 ENSMUSP00000138031 TRANSLATION protein_coding - CCDS15202.1 1 207.0 0.0 0.0 30.9 373.3 0.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000042414 Prdm14 ENSMUST00000047577 ENSMUSP00000044245 TRANSLATION protein_coding - CCDS48221.1 1 561.0 23.0 4.5 0.1 72.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000079283 2310009B15Rik ENSMUST00000193374 ENSMUSP00000141565 TRANSLATION nonsense_mediated_decay - - 1 143.0 0.0 0.2 0.0 0.0 0.0 -3,1 0.0445 - -2.0 MINOR ENSMUSG00000079283 2310009B15Rik ENSMUST00000195075 - NO_TRANSLATION retained_intron ENSMUSG00000079283 2310009B15Rik ENSMUST00000112025 ENSMUSP00000107656 TRANSLATION protein_coding - CCDS35727.1 2 136.0 0.0 1.95 1.5 0.0 0.0 -3,1 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000026176 Ctdsp1 ENSMUST00000141175 - NO_TRANSLATION retained_intron ENSMUSG00000026176 Ctdsp1 ENSMUST00000027367 ENSMUSP00000027367 TRANSLATION protein_coding - CCDS15048.1 1 261.0 10.0 4.5 28.9 175.9 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000026176 Ctdsp1 ENSMUST00000152659 ENSMUSP00000114526 TRANSLATION protein_coding start/stop - 2 131.0 4.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032908 Sgpp2 ENSMUST00000036172 ENSMUSP00000036656 TRANSLATION protein_coding - CCDS15083.1 1 354.0 4.0 0.0 0.1 59.5 0.0 -4,-1 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000026209 Dnpep ENSMUST00000113605 ENSMUSP00000109235 TRANSLATION protein_coding - CCDS15070.1 1 473.0 7.0 12.75 9.9 651.1 0.0 -4,-1 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000026209 Dnpep ENSMUST00000185797 ENSMUSP00000140864 TRANSLATION protein_coding - CCDS78623.1 1 475.0 7.0 12.75 4.7 651.1 0.0 -4,-1 0.7958 16 19.248 MINOR ENSMUSG00000026209 Dnpep ENSMUST00000187836 ENSMUSP00000139739 TRANSLATION protein_coding - CCDS15070.1 1 473.0 7.0 12.75 9.9 651.1 0.0 -4,-1 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000026209 Dnpep ENSMUST00000190005 - NO_TRANSLATION retained_intron ENSMUSG00000026209 Dnpep ENSMUST00000188652 ENSMUSP00000139532 TRANSLATION protein_coding stop - 3 85.0 0.0 2.5 0.0 83.9 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000026209 Dnpep ENSMUST00000189551 ENSMUSP00000140563 TRANSLATION protein_coding stop - 5 210.0 1.0 5.55 0.0 262.6 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000026209 Dnpep ENSMUST00000066668 ENSMUSP00000070821 TRANSLATION protein_coding - CCDS15070.1 1 473.0 7.0 12.75 9.9 651.1 0.0 -4,-1 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000026209 Dnpep ENSMUST00000185419 ENSMUSP00000140035 TRANSLATION protein_coding - - 1 470.0 7.0 12.25 0.0 644.0 0.0 -4,-1 0.1459 15 16.572 MINOR ENSMUSG00000026209 Dnpep ENSMUST00000186278 - NO_TRANSLATION retained_intron ENSMUSG00000026209 Dnpep ENSMUST00000189282 ENSMUSP00000141187 TRANSLATION protein_coding stop - 2 56.0 0.0 1.75 0.0 36.8 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000026209 Dnpep ENSMUST00000191254 ENSMUSP00000140997 TRANSLATION protein_coding stop - 5 92.0 0.0 2.5 0.0 41.5 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000026209 Dnpep ENSMUST00000187000 ENSMUSP00000141014 TRANSLATION protein_coding stop - 5 271.0 3.0 8.0 0.0 353.9 0.0 -4,-1 0.0004 6 -2.0 MINOR ENSMUSG00000026209 Dnpep ENSMUST00000187791 - NO_TRANSLATION retained_intron ENSMUSG00000026209 Dnpep ENSMUST00000187075 ENSMUSP00000140877 TRANSLATION protein_coding stop - 3 222.0 1.0 6.5 0.0 282.0 0.0 -4,-1 0.0007 5 -2.0 MINOR ENSMUSG00000091013 Vmn1r1 ENSMUST00000227586 ENSMUSP00000154404 TRANSLATION protein_coding - CCDS48475.1 - 306.0 0.0 0.0 0.1 258.9 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091013 Vmn1r1 ENSMUST00000169123 ENSMUSP00000133035 TRANSLATION protein_coding - CCDS48475.1 - 306.0 0.0 0.0 0.1 258.9 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091013 Vmn1r1 ENSMUST00000227629 ENSMUSP00000153940 TRANSLATION protein_coding - CCDS48475.1 - 306.0 0.0 0.0 0.1 258.9 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000093805 Gal3st2b ENSMUST00000177958 ENSMUSP00000136311 TRANSLATION protein_coding - - 1 396.0 0.0 1.44 3.1 493.1 2.0 -1,-5 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000093805 Gal3st2b ENSMUST00000178757 ENSMUSP00000136012 TRANSLATION protein_coding - CCDS56641.1 1 394.0 0.0 1.44 0.0 494.8 2.0 -1,-5 0.6066 - 6.0 ALTERNATIVE:2 ENSMUSG00000069085 Dytn ENSMUST00000090313 ENSMUSP00000087787 TRANSLATION protein_coding - CCDS35595.1 1 653.0 3.0 2.73 0.0 148.0 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069085 Dytn ENSMUST00000126954 - NO_TRANSLATION retained_intron ENSMUSG00000003458 Ncstn ENSMUST00000146137 ENSMUSP00000120663 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 1.0 0.0 0.0 1.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000003458 Ncstn ENSMUST00000142825 - NO_TRANSLATION retained_intron ENSMUSG00000003458 Ncstn ENSMUST00000140643 ENSMUSP00000119128 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 1.0 0.0 0.0 1.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000003458 Ncstn ENSMUST00000122986 - NO_TRANSLATION retained_intron ENSMUSG00000003458 Ncstn ENSMUST00000135928 - NO_TRANSLATION retained_intron ENSMUSG00000003458 Ncstn ENSMUST00000003550 ENSMUSP00000003550 TRANSLATION protein_coding - CCDS15507.1 1 708.0 0.0 15.75 6.0 305.6 2.0 -1,-4 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000043760 Pkhd1 ENSMUST00000128051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043760 Pkhd1 ENSMUST00000132647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043760 Pkhd1 ENSMUST00000147480 - NO_TRANSLATION retained_intron ENSMUSG00000043760 Pkhd1 ENSMUST00000088448 ENSMUSP00000085794 TRANSLATION protein_coding - CCDS14841.1 1 4059.0 0.0 1.42 0.0 416.8 0.0 4,-1 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000026443 Lrrn2 ENSMUST00000027706 ENSMUSP00000027706 TRANSLATION protein_coding - CCDS15289.1 1 730.0 0.0 0.6 0.0 185.7 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000026443 Lrrn2 ENSMUST00000159088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025937 Lactb2 ENSMUST00000027071 ENSMUSP00000027071 TRANSLATION protein_coding - CCDS14823.1 1 288.0 7.0 6.25 30.2 65.9 0.0 -4,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000025937 Lactb2 ENSMUST00000156222 - NO_TRANSLATION retained_intron ENSMUSG00000026577 Blzf1 ENSMUST00000120447 ENSMUSP00000113479 TRANSLATION protein_coding - CCDS48423.1 1 403.0 0.0 1.65 12.5 37.9 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000026577 Blzf1 ENSMUST00000124007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026577 Blzf1 ENSMUST00000148884 - NO_TRANSLATION retained_intron ENSMUSG00000026577 Blzf1 ENSMUST00000027866 ENSMUSP00000027866 TRANSLATION protein_coding - CCDS15435.1 1 410.0 0.0 1.65 0.0 37.9 0.0 -4,-5 0.2955 7 12.0 MINOR ENSMUSG00000026577 Blzf1 ENSMUST00000086032 ENSMUSP00000083196 TRANSLATION protein_coding - CCDS48423.1 1 403.0 0.0 1.65 12.5 37.9 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000026511 Srp9 ENSMUST00000191799 - NO_TRANSLATION retained_intron ENSMUSG00000026511 Srp9 ENSMUST00000111018 ENSMUSP00000106647 TRANSLATION protein_coding - - 1 63.0 0.0 1.75 1.1 0.0 0.0 -4,-5 0.0016 1 4.212 MINOR ENSMUSG00000026511 Srp9 ENSMUST00000027792 ENSMUSP00000027792 TRANSLATION protein_coding - CCDS35812.1 1 86.0 0.0 2.5 36.2 43.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026511 Srp9 ENSMUST00000193005 - NO_TRANSLATION retained_intron ENSMUSG00000109809 Gm34066 ENSMUST00000210156 ENSMUSP00000158889 TRANSLATION protein_coding - - 5 100.0 0.0 0.6 5.9 144.5 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026068 Il18rap ENSMUST00000159724 - NO_TRANSLATION retained_intron ENSMUSG00000026068 Il18rap ENSMUST00000160468 - NO_TRANSLATION retained_intron ENSMUSG00000026068 Il18rap ENSMUST00000027237 ENSMUSP00000027237 TRANSLATION protein_coding - CCDS14912.1 1 614.0 0.0 5.448 0.3 182.1 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026068 Il18rap ENSMUST00000163057 - NO_TRANSLATION retained_intron ENSMUSG00000041483 Zfp281 ENSMUST00000112046 ENSMUSP00000107677 TRANSLATION protein_coding - CCDS15327.1 1 893.0 15.0 0.0 0.3 18.0 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000041483 Zfp281 ENSMUST00000047734 ENSMUSP00000039003 TRANSLATION protein_coding - CCDS15327.1 1 893.0 15.0 0.0 0.3 18.0 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000046404 Yod1 ENSMUST00000049813 ENSMUSP00000055318 TRANSLATION protein_coding - CCDS48351.1 1 343.0 0.0 2.0 7.3 25.7 0.0 -4,-6 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000026063 Dnaaf6 ENSMUST00000027230 ENSMUSP00000127665 TRANSLATION protein_coding - CCDS35531.1 - 218.0 0.0 0.8 6.6 24.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025925 Terf1 ENSMUST00000027057 ENSMUSP00000027057 TRANSLATION protein_coding - CCDS78547.1 1 392.0 0.0 5.0 0.1 96.3 0.0 -4,-5 0.0153 3 7.65 MINOR ENSMUSG00000025925 Terf1 ENSMUST00000186565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025925 Terf1 ENSMUST00000188371 ENSMUSP00000140744 TRANSLATION protein_coding - CCDS14827.1 1 421.0 0.0 5.75 0.1 143.8 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000025925 Terf1 ENSMUST00000188684 - NO_TRANSLATION retained_intron ENSMUSG00000033684 Qsox1 ENSMUST00000130701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033684 Qsox1 ENSMUST00000140809 - NO_TRANSLATION retained_intron ENSMUSG00000033684 Qsox1 ENSMUST00000132495 - NO_TRANSLATION retained_intron ENSMUSG00000033684 Qsox1 ENSMUST00000195419 - NO_TRANSLATION retained_intron ENSMUSG00000033684 Qsox1 ENSMUST00000035325 ENSMUSP00000035658 TRANSLATION protein_coding - CCDS15386.1 1 748.0 27.0 11.3 0.1 148.3 0.0 4,-1 0.4537 23 14.0 ALTERNATIVE:2 ENSMUSG00000033684 Qsox1 ENSMUST00000194632 ENSMUSP00000142301 TRANSLATION protein_coding - CCDS78713.1 1 568.0 27.0 11.3 0.4 148.6 0.0 4,-1 0.4388 22 14.0 ALTERNATIVE:2 ENSMUSG00000033684 Qsox1 ENSMUST00000151368 - NO_TRANSLATION retained_intron ENSMUSG00000033684 Qsox1 ENSMUST00000111764 ENSMUSP00000107394 TRANSLATION protein_coding - - 1 661.0 27.0 11.3 0.0 148.3 0.0 4,-1 0.7763 23 14.0 PRINCIPAL:2 ENSMUSG00000033952 Aspm ENSMUST00000053364 ENSMUSP00000059159 TRANSLATION protein_coding - CCDS35729.1 1 3122.0 0.0 6.99 0.0 631.4 0.0 -4,-6 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000033952 Aspm ENSMUST00000199998 - NO_TRANSLATION retained_intron ENSMUSG00000033952 Aspm ENSMUST00000196272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033952 Aspm ENSMUST00000200083 ENSMUSP00000142880 TRANSLATION protein_coding - - 1 1857.0 0.0 6.4275 0.0 248.8 0.0 -4,-6 0.0388 3 4.872 MINOR ENSMUSG00000033952 Aspm ENSMUST00000197096 - NO_TRANSLATION retained_intron ENSMUSG00000026348 Acmsd ENSMUST00000186537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026348 Acmsd ENSMUST00000038006 ENSMUSP00000048482 TRANSLATION protein_coding - CCDS15247.1 1 336.0 4.0 8.25 31.7 251.3 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000095576 Fmo6 ENSMUST00000195576 ENSMUSP00000144106 TRANSLATION nonsense_mediated_decay - - 1 136.0 18.0 2.12 0.0 196.6 0.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000095576 Fmo6 ENSMUST00000178465 ENSMUSP00000136378 TRANSLATION protein_coding - CCDS56650.1 5 532.0 41.0 8.08 16.9 898.4 0.0 -2,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000026411 Tmem9 ENSMUST00000118832 - NO_TRANSLATION retained_intron ENSMUSG00000026411 Tmem9 ENSMUST00000140545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026411 Tmem9 ENSMUST00000165125 ENSMUSP00000128185 TRANSLATION protein_coding - CCDS15323.1 3 183.0 0.0 3.0 0.0 185.0 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000026411 Tmem9 ENSMUST00000063719 ENSMUSP00000065409 TRANSLATION protein_coding - CCDS15323.1 1 183.0 0.0 3.0 0.0 185.0 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000026411 Tmem9 ENSMUST00000117950 ENSMUSP00000113416 TRANSLATION protein_coding - CCDS15323.1 2 183.0 0.0 3.0 0.0 185.0 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000041075 Fzd7 ENSMUST00000114246 ENSMUSP00000109884 TRANSLATION protein_coding - CCDS14985.1 - 572.0 0.0 0.4 10.4 585.6 0.0 3,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000056211 R3hdm1 ENSMUST00000189982 - NO_TRANSLATION retained_intron ENSMUSG00000056211 R3hdm1 ENSMUST00000188381 ENSMUSP00000140538 TRANSLATION protein_coding stop - 1 239.0 0.0 3.1 0.0 47.9 0.0 -4,-5 0.0176 3 -2.0 MINOR ENSMUSG00000056211 R3hdm1 ENSMUST00000185853 ENSMUSP00000139647 TRANSLATION protein_coding start/stop - 3 183.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000056211 R3hdm1 ENSMUST00000190288 - NO_TRANSLATION retained_intron ENSMUSG00000056211 R3hdm1 ENSMUST00000188570 - NO_TRANSLATION retained_intron ENSMUSG00000056211 R3hdm1 ENSMUST00000191016 - NO_TRANSLATION retained_intron ENSMUSG00000056211 R3hdm1 ENSMUST00000185471 - NO_TRANSLATION retained_intron ENSMUSG00000056211 R3hdm1 ENSMUST00000191274 - NO_TRANSLATION retained_intron ENSMUSG00000056211 R3hdm1 ENSMUST00000189317 ENSMUSP00000140175 TRANSLATION protein_coding stop - 5 287.0 0.0 3.1 0.0 95.6 0.0 -4,-5 0.0217 3 -2.0 MINOR ENSMUSG00000056211 R3hdm1 ENSMUST00000185389 - NO_TRANSLATION retained_intron ENSMUSG00000056211 R3hdm1 ENSMUST00000036288 ENSMUSP00000043103 TRANSLATION protein_coding - CCDS15250.1 5 1135.0 0.0 3.1 6.4 95.3 0.0 -4,-5 1.0 11 13.982 PRINCIPAL:1 ENSMUSG00000056211 R3hdm1 ENSMUST00000190056 ENSMUSP00000140209 TRANSLATION protein_coding start/stop - 5 385.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000056211 R3hdm1 ENSMUST00000187605 - NO_TRANSLATION retained_intron ENSMUSG00000056211 R3hdm1 ENSMUST00000187023 ENSMUSP00000139749 TRANSLATION protein_coding stop - 5 486.0 0.0 3.1 0.0 95.3 0.0 -4,-6 0.0343 5 -2.0 MINOR ENSMUSG00000056211 R3hdm1 ENSMUST00000187900 ENSMUSP00000141142 TRANSLATION protein_coding - - 1 549.0 0.0 3.1 0.0 95.3 0.0 -4,-5 0.0347 6 11.982 MINOR ENSMUSG00000056211 R3hdm1 ENSMUST00000187557 ENSMUSP00000140583 TRANSLATION protein_coding stop - 5 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079610 Ankrd39 ENSMUST00000207843 ENSMUSP00000147091 TRANSLATION nonsense_mediated_decay - - 1 98.0 4.0 0.2 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000079610 Ankrd39 ENSMUST00000207922 - NO_TRANSLATION retained_intron ENSMUSG00000079610 Ankrd39 ENSMUST00000001172 ENSMUSP00000001172 TRANSLATION protein_coding - CCDS14883.1 1 183.0 0.0 3.78 19.4 83.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000079610 Ankrd39 ENSMUST00000194894 ENSMUSP00000141712 TRANSLATION protein_coding - CCDS78565.1 1 167.0 0.0 2.73 0.4 76.1 0.0 -4,-5 0.0191 2 9.342 MINOR ENSMUSG00000079610 Ankrd39 ENSMUST00000208690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079610 Ankrd39 ENSMUST00000208269 - NO_TRANSLATION retained_intron ENSMUSG00000026279 Thap4 ENSMUST00000187445 ENSMUSP00000140243 TRANSLATION nonsense_mediated_decay start - 3 31.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026279 Thap4 ENSMUST00000190116 ENSMUSP00000140761 TRANSLATION protein_coding - CCDS15194.1 1 569.0 19.0 4.38 0.4 213.4 0.0 -4,-7 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000026279 Thap4 ENSMUST00000189472 ENSMUSP00000139747 TRANSLATION protein_coding start - 2 182.0 8.0 3.08 0.0 107.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026279 Thap4 ENSMUST00000189728 ENSMUSP00000143943 TRANSLATION protein_coding - CCDS78657.1 2 165.0 14.0 4.08 8.8 144.6 0.0 -4,-7 0.9219 - 12.936 MINOR ENSMUSG00000026279 Thap4 ENSMUST00000112905 ENSMUSP00000108526 TRANSLATION nonsense_mediated_decay - - 1 379.0 5.0 0.3 0.0 68.8 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000026279 Thap4 ENSMUST00000189173 - NO_TRANSLATION retained_intron ENSMUSG00000026504 Sdccag8 ENSMUST00000027785 ENSMUSP00000027785 TRANSLATION protein_coding - CCDS35798.1 1 717.0 0.0 0.0 7.3 1247.5 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000026504 Sdccag8 ENSMUST00000133305 - NO_TRANSLATION retained_intron ENSMUSG00000026504 Sdccag8 ENSMUST00000150429 - NO_TRANSLATION retained_intron ENSMUSG00000026504 Sdccag8 ENSMUST00000056773 ENSMUSP00000050667 TRANSLATION protein_coding - - 1 379.0 0.0 0.0 0.0 521.4 0.0 -4,-5 0.0038 2 0.0 MINOR ENSMUSG00000026504 Sdccag8 ENSMUST00000123409 ENSMUSP00000137948 TRANSLATION nonsense_mediated_decay - - 5 367.0 0.0 0.0 0.0 628.8 0.0 -4,-5 0.007 2 -2.0 MINOR ENSMUSG00000026504 Sdccag8 ENSMUST00000139589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026083 Eif5b ENSMUST00000195664 - NO_TRANSLATION retained_intron ENSMUSG00000026083 Eif5b ENSMUST00000027252 ENSMUSP00000027252 TRANSLATION protein_coding - CCDS35544.1 2 1216.0 13.0 13.5 2.4 226.0 0.0 -4,-5 1.0 34 19.0 PRINCIPAL:1 ENSMUSG00000026083 Eif5b ENSMUST00000193806 - NO_TRANSLATION retained_intron ENSMUSG00000026083 Eif5b ENSMUST00000193151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026083 Eif5b ENSMUST00000192548 - NO_TRANSLATION retained_intron ENSMUSG00000026432 Avpr1b ENSMUST00000190410 ENSMUSP00000140527 TRANSLATION protein_coding - - 5 123.0 0.0 0.4 0.0 27.6 2.0 -4,-7 0.0015 - 1.92 MINOR ENSMUSG00000026432 Avpr1b ENSMUST00000027690 ENSMUSP00000027690 TRANSLATION protein_coding - CCDS35703.1 1 421.0 0.0 1.25 10.3 238.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026258 Snorc ENSMUST00000027476 ENSMUSP00000027476 TRANSLATION protein_coding - CCDS48305.1 1 121.0 0.0 0.0 9.9 147.4 0.0 3,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000026258 Snorc ENSMUST00000191095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006007 Pdc ENSMUST00000185698 ENSMUSP00000140669 TRANSLATION protein_coding - - 1 82.0 0.0 1.25 0.0 78.6 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000006007 Pdc ENSMUST00000191228 ENSMUSP00000141136 TRANSLATION protein_coding - CCDS15354.1 1 244.0 0.0 3.25 17.2 422.4 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000006007 Pdc ENSMUST00000165062 ENSMUSP00000131631 TRANSLATION protein_coding - CCDS15354.1 2 244.0 0.0 3.25 17.2 422.4 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000006007 Pdc ENSMUST00000186572 ENSMUSP00000140843 TRANSLATION protein_coding stop - 2 185.0 0.0 2.25 0.0 315.5 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000026398 Nr5a2 ENSMUST00000027649 ENSMUSP00000027649 TRANSLATION protein_coding - CCDS15328.1 1 560.0 8.0 6.35 0.1 227.3 0.0 -4,-5 0.1633 4 14.0 MINOR ENSMUSG00000026398 Nr5a2 ENSMUST00000192929 ENSMUSP00000141495 TRANSLATION protein_coding - CCDS48382.1 1 499.0 8.0 6.35 22.5 227.3 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:4 ENSMUSG00000026398 Nr5a2 ENSMUST00000192587 - NO_TRANSLATION retained_intron ENSMUSG00000026398 Nr5a2 ENSMUST00000192357 ENSMUSP00000142219 TRANSLATION protein_coding - - 5 539.0 8.0 6.35 16.9 227.3 0.0 -4,-5 0.7741 4 16.96 ALTERNATIVE:1 ENSMUSG00000026398 Nr5a2 ENSMUST00000195428 ENSMUSP00000141645 TRANSLATION protein_coding stop - 5 136.0 8.0 2.75 0.0 112.5 0.0 -4,-5 0.0005 3 -2.0 MINOR ENSMUSG00000026398 Nr5a2 ENSMUST00000168126 ENSMUSP00000129071 TRANSLATION protein_coding - CCDS48382.1 5 499.0 8.0 6.35 22.5 227.3 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:4 ENSMUSG00000026047 Poglut2 ENSMUST00000149665 - NO_TRANSLATION retained_intron ENSMUSG00000026047 Poglut2 ENSMUST00000027213 ENSMUSP00000027213 TRANSLATION protein_coding - - 1 432.0 0.0 7.75 2.0 242.9 0.0 4,-1 0.0704 10 4.262 MINOR ENSMUSG00000026047 Poglut2 ENSMUST00000152643 ENSMUSP00000114287 TRANSLATION nonsense_mediated_decay - - 3 137.0 0.0 2.0 0.0 55.6 0.0 4,-1 0.0 4 -2.0 MINOR ENSMUSG00000026047 Poglut2 ENSMUST00000065767 ENSMUSP00000064500 TRANSLATION protein_coding - CCDS14929.1 1 502.0 0.0 8.75 16.5 433.3 0.0 4,-1 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000026047 Poglut2 ENSMUST00000141125 - NO_TRANSLATION retained_intron ENSMUSG00000026064 Ptp4a1 ENSMUST00000232841 ENSMUSP00000156862 TRANSLATION protein_coding - CCDS14858.1 - 173.0 10.0 4.75 36.9 33.5 0.0 -4,-2 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000026064 Ptp4a1 ENSMUST00000153681 - NO_TRANSLATION retained_intron ENSMUSG00000026064 Ptp4a1 ENSMUST00000130934 - NO_TRANSLATION retained_intron ENSMUSG00000047048 Or10aa3 ENSMUST00000213211 ENSMUSP00000150301 TRANSLATION protein_coding - CCDS15536.1 5 312.0 0.0 1.0 9.4 157.6 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047048 Or10aa3 ENSMUST00000062665 ENSMUSP00000060341 TRANSLATION protein_coding - CCDS15536.1 - 312.0 0.0 1.0 9.4 157.6 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047048 Or10aa3 ENSMUST00000213381 ENSMUSP00000150596 TRANSLATION protein_coding - CCDS15536.1 5 312.0 0.0 1.0 9.4 157.6 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073730 Ppp1r14bl ENSMUST00000073179 ENSMUSP00000072920 TRANSLATION protein_coding - CCDS48231.1 - 153.0 0.0 0.8 0.1 102.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025911 Adhfe1 ENSMUST00000130927 ENSMUSP00000137817 TRANSLATION nonsense_mediated_decay - - 3 67.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000025911 Adhfe1 ENSMUST00000144177 ENSMUSP00000116627 TRANSLATION protein_coding - CCDS14812.1 1 465.0 26.0 10.98 21.7 344.8 0.0 -4,0 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000025911 Adhfe1 ENSMUST00000186467 ENSMUSP00000140861 TRANSLATION nonsense_mediated_decay start - 5 39.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000025911 Adhfe1 ENSMUST00000190654 ENSMUSP00000140592 TRANSLATION nonsense_mediated_decay start - 1 457.0 26.0 10.98 0.0 344.8 0.0 -4,-2 0.15 14 -2.0 MINOR ENSMUSG00000025911 Adhfe1 ENSMUST00000027044 ENSMUSP00000137782 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000066652 Lefty2 ENSMUST00000155546 - NO_TRANSLATION retained_intron ENSMUSG00000066652 Lefty2 ENSMUST00000085797 ENSMUSP00000082952 TRANSLATION protein_coding - CCDS15575.1 1 368.0 0.0 0.33 9.4 78.3 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026721 Rabgap1l ENSMUST00000193115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026721 Rabgap1l ENSMUST00000191651 ENSMUSP00000141357 TRANSLATION protein_coding start - 3 107.0 0.0 3.0 0.0 0.0 3.0 -2,-5 0.0002 1 -2.0 MINOR ENSMUSG00000026721 Rabgap1l ENSMUST00000193185 ENSMUSP00000142258 TRANSLATION protein_coding start/stop - 3 234.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026721 Rabgap1l ENSMUST00000194696 - NO_TRANSLATION retained_intron ENSMUSG00000026721 Rabgap1l ENSMUST00000028049 ENSMUSP00000028049 TRANSLATION protein_coding - CCDS15408.1 1 815.0 0.0 9.42 11.3 329.9 3.0 -4,-5 1.0 13 14.56 PRINCIPAL:1 ENSMUSG00000026721 Rabgap1l ENSMUST00000191941 ENSMUSP00000141790 TRANSLATION nonsense_mediated_decay start - 1 59.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026721 Rabgap1l ENSMUST00000194623 - NO_TRANSLATION retained_intron ENSMUSG00000026721 Rabgap1l ENSMUST00000235109 ENSMUSP00000157276 TRANSLATION protein_coding start/stop - - 198.0 0.0 3.5 0.0 37.2 3.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000026721 Rabgap1l ENSMUST00000194824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026721 Rabgap1l ENSMUST00000028052 ENSMUSP00000028052 TRANSLATION protein_coding - CCDS15407.1 1 370.0 0.0 2.0 17.1 0.0 0.0 -4,-5 0.7621 9 4.0 MINOR ENSMUSG00000026721 Rabgap1l ENSMUST00000193729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026721 Rabgap1l ENSMUST00000195442 ENSMUSP00000141666 TRANSLATION protein_coding - - 1 477.0 0.0 0.92 0.0 134.9 0.0 -4,-5 0.0 9 0.0 MINOR ENSMUSG00000026721 Rabgap1l ENSMUST00000195114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026721 Rabgap1l ENSMUST00000192281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026721 Rabgap1l ENSMUST00000191909 ENSMUSP00000141688 TRANSLATION protein_coding start/stop - 3 230.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 4 -2.0 MINOR ENSMUSG00000026721 Rabgap1l ENSMUST00000193810 ENSMUSP00000141749 TRANSLATION protein_coding stop - 3 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026721 Rabgap1l ENSMUST00000192019 - NO_TRANSLATION retained_intron ENSMUSG00000019699 Akt3 ENSMUST00000111160 ENSMUSP00000106790 TRANSLATION protein_coding - CCDS35799.1 1 479.0 20.0 10.0975 36.9 350.3 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000019699 Akt3 ENSMUST00000019843 ENSMUSP00000019843 TRANSLATION protein_coding - - 5 470.0 20.0 9.85 0.0 345.5 0.0 -4,-5 0.0426 10 17.214 MINOR ENSMUSG00000019699 Akt3 ENSMUST00000211158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019699 Akt3 ENSMUST00000111159 ENSMUSP00000106789 TRANSLATION protein_coding - CCDS35799.1 5 479.0 20.0 10.0975 36.9 350.3 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000026531 Mptx1 ENSMUST00000027816 ENSMUSP00000027816 TRANSLATION protein_coding - CCDS15541.1 1 219.0 0.0 1.0 6.0 243.4 0.0 4,-1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000026437 Cdk18 ENSMUST00000185601 ENSMUSP00000140034 TRANSLATION nonsense_mediated_decay start - 5 68.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026437 Cdk18 ENSMUST00000189733 - NO_TRANSLATION retained_intron ENSMUSG00000026437 Cdk18 ENSMUST00000188387 - NO_TRANSLATION retained_intron ENSMUSG00000026437 Cdk18 ENSMUST00000027697 ENSMUSP00000027697 TRANSLATION protein_coding - CCDS15281.1 1 451.0 18.0 9.53 3.8 241.8 0.0 -4,-7 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000026270 Capn10 ENSMUST00000027488 ENSMUSP00000027488 TRANSLATION protein_coding - CCDS15181.1 1 666.0 0.0 5.178 1.8 395.7 0.0 -4,-6 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000026270 Capn10 ENSMUST00000136598 - NO_TRANSLATION retained_intron ENSMUSG00000026270 Capn10 ENSMUST00000153828 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026270 Capn10 ENSMUST00000152983 ENSMUSP00000122158 TRANSLATION nonsense_mediated_decay - - 5 507.0 0.0 5.178 0.0 342.1 0.0 -4,-6 0.0514 5 -2.0 MINOR ENSMUSG00000026270 Capn10 ENSMUST00000117814 ENSMUSP00000112831 TRANSLATION protein_coding - - 1 264.0 0.0 2.74 0.0 198.3 0.0 -4,-6 0.0 1 1.122 MINOR ENSMUSG00000026270 Capn10 ENSMUST00000187342 ENSMUSP00000141110 TRANSLATION nonsense_mediated_decay start - 5 179.0 0.0 1.4 0.0 66.1 0.0 -1,-4 0.0 1 -2.0 MINOR ENSMUSG00000026270 Capn10 ENSMUST00000128429 - NO_TRANSLATION retained_intron ENSMUSG00000048402 Gli2 ENSMUST00000162607 ENSMUSP00000123808 TRANSLATION protein_coding stop - 1 270.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000048402 Gli2 ENSMUST00000159839 ENSMUSP00000125661 TRANSLATION nonsense_mediated_decay - - 1 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048402 Gli2 ENSMUST00000160991 ENSMUSP00000125634 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048402 Gli2 ENSMUST00000162552 ENSMUSP00000125059 TRANSLATION nonsense_mediated_decay - - 1 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048402 Gli2 ENSMUST00000161056 ENSMUSP00000124768 TRANSLATION nonsense_mediated_decay - - 1 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048402 Gli2 ENSMUST00000161451 ENSMUSP00000124132 TRANSLATION protein_coding stop - 1 244.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000048402 Gli2 ENSMUST00000159678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048402 Gli2 ENSMUST00000062483 ENSMUSP00000054837 TRANSLATION protein_coding - CCDS35692.1 1 1544.0 21.0 3.616 0.0 84.7 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000048402 Gli2 ENSMUST00000161301 ENSMUSP00000125342 TRANSLATION protein_coding stop - 1 447.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000026573 Xcl1 ENSMUST00000027860 ENSMUSP00000027860 TRANSLATION protein_coding - CCDS15438.1 1 114.0 0.0 2.0 8.3 47.0 0.0 3,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026592 Tex35 ENSMUST00000121911 ENSMUSP00000113622 TRANSLATION protein_coding - CCDS78716.1 5 187.0 0.0 2.0 0.0 306.6 0.0 -4,-5 0.1065 - 6.0 MINOR ENSMUSG00000026592 Tex35 ENSMUST00000027884 ENSMUSP00000027884 TRANSLATION protein_coding - CCDS78718.1 1 207.0 0.0 2.0 3.3 352.3 0.0 -4,-5 0.9509 - 9.0 ALTERNATIVE:2 ENSMUSG00000026592 Tex35 ENSMUST00000119526 ENSMUSP00000113325 TRANSLATION protein_coding - CCDS78715.1 5 186.0 0.0 2.0 0.0 311.3 0.0 -4,-5 0.1032 - 6.0 MINOR ENSMUSG00000026592 Tex35 ENSMUST00000148649 ENSMUSP00000116924 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026592 Tex35 ENSMUST00000187546 ENSMUSP00000139460 TRANSLATION protein_coding - - 5 209.0 0.0 2.0 1.2 302.8 0.0 -4,-5 0.2115 - 6.087 MINOR ENSMUSG00000026592 Tex35 ENSMUST00000118207 ENSMUSP00000114092 TRANSLATION protein_coding - CCDS48407.1 1 208.0 0.0 2.0 3.3 347.7 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000067299 Crygd ENSMUST00000146122 ENSMUSP00000122528 TRANSLATION protein_coding start/stop - 5 110.0 3.0 1.0 0.0 99.9 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000067299 Crygd ENSMUST00000127762 - NO_TRANSLATION retained_intron ENSMUSG00000067299 Crygd ENSMUST00000045028 ENSMUSP00000045327 TRANSLATION protein_coding - CCDS35599.1 1 174.0 3.0 2.0 23.7 214.2 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000026490 Cdc42bpa ENSMUST00000145181 ENSMUSP00000118039 TRANSLATION protein_coding start/stop - 2 185.0 3.0 0.075 0.0 95.8 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000026490 Cdc42bpa ENSMUST00000111117 ENSMUSP00000106746 TRANSLATION protein_coding - CCDS48466.1 1 1732.0 25.0 11.68 8.2 694.9 0.0 -4,-5 0.9471 33 16.733 ALTERNATIVE:1 ENSMUSG00000026490 Cdc42bpa ENSMUST00000097453 ENSMUSP00000095062 TRANSLATION protein_coding - - 5 1691.0 25.0 11.605 1.1 694.9 0.0 -4,-5 0.368 32 13.889 MINOR ENSMUSG00000026490 Cdc42bpa ENSMUST00000135056 ENSMUSP00000114333 TRANSLATION protein_coding start/stop - 5 732.0 8.0 3.18 0.0 384.9 0.0 -4,-5 0.0034 16 -2.0 MINOR ENSMUSG00000026490 Cdc42bpa ENSMUST00000212756 ENSMUSP00000148469 TRANSLATION protein_coding - - 5 1748.0 25.0 11.68 0.8 694.9 0.0 -4,-5 0.3689 33 14.0 MINOR ENSMUSG00000026490 Cdc42bpa ENSMUST00000132894 - NO_TRANSLATION retained_intron ENSMUSG00000026490 Cdc42bpa ENSMUST00000152582 - NO_TRANSLATION retained_intron ENSMUSG00000026490 Cdc42bpa ENSMUST00000097450 ENSMUSP00000095059 TRANSLATION protein_coding - CCDS83649.1 1 1719.0 25.0 11.68 8.9 694.9 0.0 -4,-5 1.0 33 17.0 PRINCIPAL:4 ENSMUSG00000026490 Cdc42bpa ENSMUST00000134959 ENSMUSP00000142018 TRANSLATION nonsense_mediated_decay - - 5 93.0 4.0 2.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026490 Cdc42bpa ENSMUST00000194974 - NO_TRANSLATION retained_intron ENSMUSG00000026490 Cdc42bpa ENSMUST00000076687 ENSMUSP00000075980 TRANSLATION protein_coding - CCDS83650.1 5 1638.0 25.0 11.68 8.9 594.2 0.0 -4,-5 0.7192 33 16.4 MINOR ENSMUSG00000026490 Cdc42bpa ENSMUST00000139002 - NO_TRANSLATION retained_intron ENSMUSG00000026490 Cdc42bpa ENSMUST00000143161 - NO_TRANSLATION retained_intron ENSMUSG00000026490 Cdc42bpa ENSMUST00000129754 - NO_TRANSLATION retained_intron ENSMUSG00000026490 Cdc42bpa ENSMUST00000145274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026490 Cdc42bpa ENSMUST00000143350 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026490 Cdc42bpa ENSMUST00000133890 ENSMUSP00000116337 TRANSLATION protein_coding start - 5 1048.0 8.0 3.18 0.0 384.9 0.0 -4,-5 0.0083 23 -2.0 MINOR ENSMUSG00000026490 Cdc42bpa ENSMUST00000143176 ENSMUSP00000115261 TRANSLATION protein_coding start - 5 984.0 8.0 3.18 0.0 384.9 0.0 -4,-5 0.0074 19 -2.0 MINOR ENSMUSG00000026312 Cdh7 ENSMUST00000172005 ENSMUSP00000129715 TRANSLATION protein_coding - CCDS15221.1 1 785.0 51.0 10.13 25.8 466.5 1.0 2,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000026312 Cdh7 ENSMUST00000112701 ENSMUSP00000108321 TRANSLATION protein_coding - CCDS15221.1 5 785.0 51.0 10.13 25.8 466.5 1.0 2,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000026312 Cdh7 ENSMUST00000134301 ENSMUSP00000123394 TRANSLATION protein_coding start - 1 179.0 4.0 2.3 0.0 55.2 1.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026312 Cdh7 ENSMUST00000027542 ENSMUSP00000027542 TRANSLATION protein_coding - CCDS15221.1 1 785.0 51.0 10.13 25.8 466.5 1.0 2,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000026312 Cdh7 ENSMUST00000129923 ENSMUSP00000140966 TRANSLATION protein_coding - - 1 76.0 2.0 0.6 0.0 0.0 0.0 2,-2 0.0025 - 0.0 MINOR ENSMUSG00000026312 Cdh7 ENSMUST00000145188 ENSMUSP00000120231 TRANSLATION protein_coding stop - 3 67.0 2.0 0.5 0.0 0.0 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000026312 Cdh7 ENSMUST00000137092 ENSMUSP00000139465 TRANSLATION protein_coding - - 1 76.0 2.0 0.6 0.0 0.0 0.0 2,-2 0.0025 - 0.0 MINOR ENSMUSG00000026312 Cdh7 ENSMUST00000131464 ENSMUSP00000138046 TRANSLATION nonsense_mediated_decay - - 1 73.0 2.0 0.6 0.0 0.0 0.0 2,-2 0.0025 - -2.0 MINOR ENSMUSG00000026312 Cdh7 ENSMUST00000146282 ENSMUSP00000140650 TRANSLATION protein_coding - - 3 76.0 2.0 0.6 0.0 0.0 0.0 2,-2 0.0025 - 0.0 MINOR ENSMUSG00000026656 Fcgr2b ENSMUST00000161503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026656 Fcgr2b ENSMUST00000159688 ENSMUSP00000123774 TRANSLATION protein_coding - - 1 312.0 0.0 2.665 3.2 84.9 3.0 0,-3 0.6166 4 9.334 ALTERNATIVE:2 ENSMUSG00000026656 Fcgr2b ENSMUST00000160106 - NO_TRANSLATION retained_intron ENSMUSG00000026656 Fcgr2b ENSMUST00000161730 - NO_TRANSLATION retained_intron ENSMUSG00000026656 Fcgr2b ENSMUST00000081103 ENSMUSP00000079882 TRANSLATION protein_coding - CCDS35769.1 1 293.0 0.0 2.665 4.3 84.9 3.0 0,-3 1.0 3 10.0 PRINCIPAL:2 ENSMUSG00000026656 Fcgr2b ENSMUST00000027966 ENSMUSP00000027966 TRANSLATION protein_coding - CCDS35770.1 1 340.0 0.0 2.665 1.1 84.9 3.0 0,-3 0.4978 4 8.06 MINOR ENSMUSG00000026656 Fcgr2b ENSMUST00000159969 ENSMUSP00000137669 TRANSLATION protein_coding - CCDS35770.1 1 340.0 0.0 2.665 1.1 84.9 3.0 0,-3 0.4978 4 8.06 MINOR ENSMUSG00000026409 Pfkfb2 ENSMUST00000066863 ENSMUSP00000066426 TRANSLATION protein_coding - CCDS35701.1 1 518.0 33.0 11.83 4.0 347.0 0.0 -4,-5 0.7717 14 15.486 PRINCIPAL:3 ENSMUSG00000026409 Pfkfb2 ENSMUST00000169659 ENSMUSP00000127587 TRANSLATION protein_coding - CCDS35701.1 1 518.0 33.0 11.83 4.0 347.0 0.0 -4,-5 0.7717 14 15.486 PRINCIPAL:3 ENSMUSG00000026409 Pfkfb2 ENSMUST00000050406 ENSMUSP00000133073 TRANSLATION protein_coding - CCDS48349.1 1 497.0 33.0 11.08 0.0 347.0 0.0 -4,-5 0.0367 13 12.32 MINOR ENSMUSG00000026409 Pfkfb2 ENSMUST00000189167 ENSMUSP00000140984 TRANSLATION protein_coding - - 1 374.0 26.0 9.25 0.0 347.0 0.0 -4,-5 0.0326 9 3.992 MINOR ENSMUSG00000026409 Pfkfb2 ENSMUST00000171479 ENSMUSP00000129747 TRANSLATION protein_coding - CCDS48350.1 1 473.0 33.0 11.92 4.6 347.0 0.0 -4,-5 1.0 13 16.0 ALTERNATIVE:1 ENSMUSG00000026409 Pfkfb2 ENSMUST00000187089 ENSMUSP00000140612 TRANSLATION protein_coding - - 5 533.0 33.0 11.92 1.8 347.0 0.0 -4,-5 0.3179 14 14.444 MINOR ENSMUSG00000026409 Pfkfb2 ENSMUST00000191301 ENSMUSP00000140995 TRANSLATION nonsense_mediated_decay - - 1 196.0 11.0 4.5 0.0 225.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026409 Pfkfb2 ENSMUST00000185233 ENSMUSP00000140551 TRANSLATION nonsense_mediated_decay - CCDS35701.1 1 518.0 33.0 11.83 4.0 347.0 0.0 -4,-5 0.7717 - -2.0 MINOR ENSMUSG00000026409 Pfkfb2 ENSMUST00000189534 ENSMUSP00000140355 TRANSLATION protein_coding - CCDS48350.1 1 473.0 33.0 11.92 4.6 347.0 0.0 -4,-5 1.0 13 16.0 ALTERNATIVE:1 ENSMUSG00000026409 Pfkfb2 ENSMUST00000186867 ENSMUSP00000140068 TRANSLATION nonsense_mediated_decay - - 1 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026409 Pfkfb2 ENSMUST00000191347 ENSMUSP00000140698 TRANSLATION protein_coding - - 5 556.0 33.0 11.92 1.4 347.0 0.0 -4,-5 0.2763 14 14.222 MINOR ENSMUSG00000026409 Pfkfb2 ENSMUST00000187522 - NO_TRANSLATION retained_intron ENSMUSG00000026409 Pfkfb2 ENSMUST00000186777 ENSMUSP00000140799 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051985 Igfn1 ENSMUST00000166193 ENSMUSP00000129680 TRANSLATION protein_coding - CCDS48379.1 1 2849.0 0.0 12.605 0.0 363.9 0.0 -4,-6 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000051985 Igfn1 ENSMUST00000140703 ENSMUSP00000139810 TRANSLATION nonsense_mediated_decay start - 2 208.0 0.0 2.65 0.0 85.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000051985 Igfn1 ENSMUST00000124134 ENSMUSP00000119230 TRANSLATION protein_coding start/stop - 1 1221.0 0.0 12.275 0.0 358.5 0.0 -4,-5 0.1429 8 -2.0 MINOR ENSMUSG00000026480 Ncf2 ENSMUST00000189135 - NO_TRANSLATION retained_intron ENSMUSG00000026480 Ncf2 ENSMUST00000187235 - NO_TRANSLATION retained_intron ENSMUSG00000026480 Ncf2 ENSMUST00000187641 - NO_TRANSLATION retained_intron ENSMUSG00000026480 Ncf2 ENSMUST00000027754 ENSMUSP00000027754 TRANSLATION protein_coding - CCDS15367.1 1 525.0 0.0 10.446 8.2 171.0 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000026480 Ncf2 ENSMUST00000190323 ENSMUSP00000139774 TRANSLATION protein_coding stop - 2 114.0 0.0 3.08 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026480 Ncf2 ENSMUST00000186568 ENSMUSP00000140404 TRANSLATION protein_coding - CCDS15367.1 1 525.0 0.0 10.446 8.2 171.0 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000026385 Dbi ENSMUST00000149628 - NO_TRANSLATION retained_intron ENSMUSG00000026385 Dbi ENSMUST00000128408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026385 Dbi ENSMUST00000132118 ENSMUSP00000138014 TRANSLATION nonsense_mediated_decay - - 5 77.0 10.0 1.65 0.0 43.8 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000026385 Dbi ENSMUST00000112648 ENSMUSP00000108267 TRANSLATION protein_coding - - 2 63.0 6.0 2.0 2.1 83.2 0.0 -4,-5 0.044 4 11.23 MINOR ENSMUSG00000026385 Dbi ENSMUST00000135937 - NO_TRANSLATION retained_intron ENSMUSG00000026385 Dbi ENSMUST00000027634 ENSMUSP00000027634 TRANSLATION protein_coding - CCDS15230.1 1 87.0 12.0 2.75 36.9 104.1 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000026385 Dbi ENSMUST00000151708 ENSMUSP00000114705 TRANSLATION protein_coding - CCDS15231.1 1 135.0 12.0 2.75 0.0 101.8 0.0 -4,-2 0.1366 6 17.862 MINOR ENSMUSG00000026208 Des ENSMUST00000125948 - NO_TRANSLATION retained_intron ENSMUSG00000026208 Des ENSMUST00000144894 - NO_TRANSLATION retained_intron ENSMUSG00000026208 Des ENSMUST00000027409 ENSMUSP00000027409 TRANSLATION protein_coding - CCDS15071.1 1 469.0 0.0 5.15 11.0 467.0 0.0 -4,0 1.0 33 15.0 PRINCIPAL:1 ENSMUSG00000042684 Npl ENSMUST00000187747 - NO_TRANSLATION retained_intron ENSMUSG00000042684 Npl ENSMUST00000041874 ENSMUSP00000037454 TRANSLATION protein_coding - CCDS15374.1 1 320.0 11.0 8.25 0.0 0.0 0.0 -4,-7 0.9208 16 12.0 PRINCIPAL:1 ENSMUSG00000025916 Ppp1r42 ENSMUST00000124874 ENSMUSP00000115309 TRANSLATION nonsense_mediated_decay - - 5 269.0 0.0 4.23 3.7 37.3 0.0 -4,-6 0.9408 - -2.0 MINOR ENSMUSG00000025916 Ppp1r42 ENSMUST00000147000 ENSMUSP00000135564 TRANSLATION protein_coding start - 2 82.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025916 Ppp1r42 ENSMUST00000027049 ENSMUSP00000027049 TRANSLATION protein_coding - CCDS14817.1 1 357.0 0.0 4.23 0.4 37.3 0.0 -4,-6 1.0 - 11.874 PRINCIPAL:1 ENSMUSG00000025916 Ppp1r42 ENSMUST00000155163 - NO_TRANSLATION retained_intron ENSMUSG00000025916 Ppp1r42 ENSMUST00000176398 ENSMUSP00000135276 TRANSLATION protein_coding stop - 5 87.0 0.0 1.13 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025916 Ppp1r42 ENSMUST00000130102 ENSMUSP00000115030 TRANSLATION nonsense_mediated_decay - - 1 145.0 0.0 1.8 0.0 38.1 0.0 -4,-6 0.0051 - -2.0 MINOR ENSMUSG00000025929 Il17a ENSMUST00000027061 ENSMUSP00000027061 TRANSLATION protein_coding - CCDS14842.1 1 158.0 0.0 1.6 4.9 94.6 0.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026305 Lrrfip1 ENSMUST00000188094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026305 Lrrfip1 ENSMUST00000068167 ENSMUSP00000063878 TRANSLATION protein_coding - - 5 628.0 0.0 2.0 1.0 320.7 0.0 -4,-5 0.1099 17 10.104 MINOR ENSMUSG00000026305 Lrrfip1 ENSMUST00000187532 - NO_TRANSLATION retained_intron ENSMUSG00000026305 Lrrfip1 ENSMUST00000188708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026305 Lrrfip1 ENSMUST00000189617 ENSMUSP00000139811 TRANSLATION protein_coding - CCDS78647.1 1 663.0 0.0 2.0 2.2 320.5 0.0 -4,-5 0.255 17 10.449 MINOR ENSMUSG00000026305 Lrrfip1 ENSMUST00000097650 ENSMUSP00000095255 TRANSLATION protein_coding - CCDS35662.1 1 628.0 0.0 2.0 1.0 320.5 0.0 -4,-5 0.1983 17 10.092 MINOR ENSMUSG00000026305 Lrrfip1 ENSMUST00000186762 ENSMUSP00000139902 TRANSLATION protein_coding stop - 5 98.0 0.0 0.0 0.0 66.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026305 Lrrfip1 ENSMUST00000097649 ENSMUSP00000095254 TRANSLATION protein_coding - CCDS48320.1 1 729.0 0.0 2.0 0.0 280.9 0.0 -4,-5 0.1166 18 7.716 MINOR ENSMUSG00000026305 Lrrfip1 ENSMUST00000187375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026305 Lrrfip1 ENSMUST00000068116 ENSMUSP00000065850 TRANSLATION protein_coding - CCDS48319.1 5 428.0 0.0 2.0 11.1 352.3 0.0 -4,-6 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000026305 Lrrfip1 ENSMUST00000189505 ENSMUSP00000141024 TRANSLATION protein_coding stop - 1 323.0 0.0 2.0 0.0 223.2 0.0 -4,-6 0.0215 10 -2.0 MINOR ENSMUSG00000026305 Lrrfip1 ENSMUST00000185531 ENSMUSP00000139497 TRANSLATION protein_coding stop - 5 575.0 0.0 2.0 0.0 284.6 0.0 -4,-6 0.0266 15 -2.0 MINOR ENSMUSG00000026510 Trp53bp2 ENSMUST00000191804 - NO_TRANSLATION retained_intron ENSMUSG00000026510 Trp53bp2 ENSMUST00000191626 ENSMUSP00000141889 TRANSLATION protein_coding start/stop - 3 189.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026510 Trp53bp2 ENSMUST00000117245 ENSMUSP00000112508 TRANSLATION protein_coding - CCDS48476.1 5 1134.0 0.0 6.664 10.0 104.0 0.0 -4,-7 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000026347 Tmem163 ENSMUST00000160616 ENSMUSP00000124307 TRANSLATION protein_coding - CCDS35696.1 2 288.0 0.0 0.0 9.5 0.0 6.0 -4,-2 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000026347 Tmem163 ENSMUST00000162406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026347 Tmem163 ENSMUST00000185560 ENSMUSP00000140828 TRANSLATION protein_coding - CCDS35696.1 1 288.0 0.0 0.0 9.5 0.0 6.0 -4,-2 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000026347 Tmem163 ENSMUST00000027585 ENSMUSP00000027585 TRANSLATION nonsense_mediated_decay - CCDS35696.1 2 288.0 0.0 0.0 9.5 0.0 6.0 -4,-2 1.0 2 -2.0 MINOR ENSMUSG00000026347 Tmem163 ENSMUST00000160111 - NO_TRANSLATION retained_intron ENSMUSG00000040297 Suco ENSMUST00000192570 ENSMUSP00000141896 TRANSLATION protein_coding start/stop - 3 179.0 0.0 2.9425 0.0 136.0 0.0 -4,-5 0.0296 5 -2.0 MINOR ENSMUSG00000040297 Suco ENSMUST00000192422 - NO_TRANSLATION retained_intron ENSMUSG00000040297 Suco ENSMUST00000194106 - NO_TRANSLATION retained_intron ENSMUSG00000040297 Suco ENSMUST00000048377 ENSMUSP00000044815 TRANSLATION protein_coding - CCDS48415.1 1 1254.0 0.0 2.5465 3.3 129.7 0.0 0,-4 1.0 11 11.812 PRINCIPAL:1 ENSMUSG00000040297 Suco ENSMUST00000191975 ENSMUSP00000141627 TRANSLATION protein_coding start/stop - 3 164.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040297 Suco ENSMUST00000191841 - NO_TRANSLATION retained_intron ENSMUSG00000040297 Suco ENSMUST00000194388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048865 Arhgap30 ENSMUST00000194914 - NO_TRANSLATION retained_intron ENSMUSG00000048865 Arhgap30 ENSMUST00000056449 ENSMUSP00000059389 TRANSLATION protein_coding - CCDS15494.1 1 1093.0 0.0 5.4 0.0 147.4 0.0 -4,-6 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000048865 Arhgap30 ENSMUST00000131607 - NO_TRANSLATION retained_intron ENSMUSG00000048865 Arhgap30 ENSMUST00000135312 - NO_TRANSLATION retained_intron ENSMUSG00000059503 Or10x4 ENSMUST00000075329 ENSMUSP00000074799 TRANSLATION protein_coding - CCDS15543.1 - 309.0 0.0 0.8 8.7 136.2 0.0 -1,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034066 Farp2 ENSMUST00000122402 ENSMUSP00000113790 TRANSLATION protein_coding - - 1 795.0 0.0 8.15 0.0 266.8 0.0 -4,-5 0.0073 8 0.0 MINOR ENSMUSG00000034066 Farp2 ENSMUST00000120301 ENSMUSP00000112725 TRANSLATION protein_coding - CCDS15191.1 1 1065.0 0.0 17.05 0.4 488.2 0.0 -4,-5 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000047361 Gm973 ENSMUST00000190490 ENSMUSP00000140781 TRANSLATION protein_coding start - 5 246.0 0.0 3.0 0.0 257.7 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000047361 Gm973 ENSMUST00000186434 ENSMUSP00000141102 TRANSLATION protein_coding stop - 5 355.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0015 1 -2.0 MINOR ENSMUSG00000047361 Gm973 ENSMUST00000212835 ENSMUSP00000148463 TRANSLATION protein_coding start/stop - 5 97.0 0.0 0.0 0.0 130.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000047361 Gm973 ENSMUST00000185753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047361 Gm973 ENSMUST00000185291 - NO_TRANSLATION retained_intron ENSMUSG00000047361 Gm973 ENSMUST00000187454 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047361 Gm973 ENSMUST00000186310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047361 Gm973 ENSMUST00000114243 ENSMUSP00000109881 TRANSLATION protein_coding - CCDS35585.1 1 1059.0 0.0 3.5 0.0 521.2 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000047361 Gm973 ENSMUST00000187979 - NO_TRANSLATION retained_intron ENSMUSG00000047361 Gm973 ENSMUST00000191051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018196 Glrx2 ENSMUST00000129653 ENSMUSP00000121010 TRANSLATION protein_coding - CCDS15344.1 1 123.0 14.0 2.45 6.5 69.3 0.0 -4,-6 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000018196 Glrx2 ENSMUST00000050491 ENSMUSP00000053443 TRANSLATION nonsense_mediated_decay - - 1 72.0 0.0 0.45 0.0 0.0 0.0 -3,1 0.0004 - -2.0 MINOR ENSMUSG00000018196 Glrx2 ENSMUST00000145571 ENSMUSP00000115893 TRANSLATION protein_coding - - 2 170.0 14.0 1.45 0.0 46.1 0.0 -3,1 0.0039 2 13.542 MINOR ENSMUSG00000018196 Glrx2 ENSMUST00000148600 - NO_TRANSLATION retained_intron ENSMUSG00000018196 Glrx2 ENSMUST00000126514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018196 Glrx2 ENSMUST00000152435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018196 Glrx2 ENSMUST00000190211 - NO_TRANSLATION retained_intron ENSMUSG00000018196 Glrx2 ENSMUST00000185362 ENSMUSP00000141022 TRANSLATION protein_coding - CCDS15343.1 1 156.0 14.0 2.45 2.6 69.3 0.0 -3,1 0.4022 3 18.582 MINOR ENSMUSG00000018196 Glrx2 ENSMUST00000185367 - NO_TRANSLATION retained_intron ENSMUSG00000018196 Glrx2 ENSMUST00000188783 - NO_TRANSLATION retained_intron ENSMUSG00000018196 Glrx2 ENSMUST00000111957 ENSMUSP00000107588 TRANSLATION protein_coding - CCDS15344.1 1 123.0 14.0 2.45 6.5 69.3 0.0 -4,-6 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000018196 Glrx2 ENSMUST00000149103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018196 Glrx2 ENSMUST00000145969 ENSMUSP00000121665 TRANSLATION protein_coding - CCDS15344.1 1 123.0 14.0 2.45 6.5 69.3 0.0 -4,-6 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000054770 Kctd18 ENSMUST00000160614 - NO_TRANSLATION retained_intron ENSMUSG00000054770 Kctd18 ENSMUST00000160130 - NO_TRANSLATION retained_intron ENSMUSG00000054770 Kctd18 ENSMUST00000114410 ENSMUSP00000110052 TRANSLATION protein_coding - CCDS48269.1 1 429.0 0.0 1.532 0.0 50.2 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000054770 Kctd18 ENSMUST00000163061 ENSMUSP00000124053 TRANSLATION nonsense_mediated_decay - - 5 129.0 0.0 1.2 0.0 50.2 0.0 -4,-5 0.0186 - -2.0 MINOR ENSMUSG00000054770 Kctd18 ENSMUST00000068000 - NO_TRANSLATION retained_intron ENSMUSG00000054770 Kctd18 ENSMUST00000159826 ENSMUSP00000125245 TRANSLATION protein_coding stop - 5 179.0 0.0 0.482 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000054770 Kctd18 ENSMUST00000189298 - NO_TRANSLATION retained_intron ENSMUSG00000054770 Kctd18 ENSMUST00000162410 - NO_TRANSLATION retained_intron ENSMUSG00000054770 Kctd18 ENSMUST00000163006 - NO_TRANSLATION retained_intron ENSMUSG00000054770 Kctd18 ENSMUST00000164963 ENSMUSP00000130952 TRANSLATION protein_coding - CCDS48268.1 5 262.0 0.0 0.482 0.0 0.0 0.0 -4,-5 0.0291 3 1.89 MINOR ENSMUSG00000054770 Kctd18 ENSMUST00000161608 ENSMUSP00000125153 TRANSLATION nonsense_mediated_decay - - 1 129.0 0.0 1.2 0.0 50.2 0.0 -4,-5 0.0186 2 -2.0 MINOR ENSMUSG00000033964 Zbtb41 ENSMUST00000200243 ENSMUSP00000142797 TRANSLATION protein_coding stop - 5 657.0 39.0 5.98 0.0 195.9 0.0 -4,-5 0.0184 - -2.0 MINOR ENSMUSG00000033964 Zbtb41 ENSMUST00000199011 ENSMUSP00000143768 TRANSLATION nonsense_mediated_decay start - 1 219.0 4.0 0.33 0.0 18.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033964 Zbtb41 ENSMUST00000039867 ENSMUSP00000045570 TRANSLATION protein_coding - CCDS48385.1 1 908.0 51.0 6.28 8.8 231.1 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000034220 Gpc1 ENSMUST00000190677 - NO_TRANSLATION retained_intron ENSMUSG00000034220 Gpc1 ENSMUST00000190586 - NO_TRANSLATION retained_intron ENSMUSG00000034220 Gpc1 ENSMUST00000045970 ENSMUSP00000047199 TRANSLATION protein_coding - CCDS15177.1 1 557.0 0.0 6.1 5.7 748.5 0.0 4,-2 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000034220 Gpc1 ENSMUST00000190215 - NO_TRANSLATION retained_intron ENSMUSG00000034220 Gpc1 ENSMUST00000191373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032649 Colgalt2 ENSMUST00000044311 ENSMUSP00000037532 TRANSLATION protein_coding - CCDS15364.1 1 625.0 0.0 11.55 2.1 195.3 0.0 2,-2 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000032649 Colgalt2 ENSMUST00000127586 ENSMUSP00000119210 TRANSLATION nonsense_mediated_decay - - 1 469.0 0.0 9.55 0.0 182.5 0.0 2,-2 0.0069 5 -2.0 MINOR ENSMUSG00000048874 Phf3 ENSMUST00000187968 ENSMUSP00000139454 TRANSLATION protein_coding stop - 3 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048874 Phf3 ENSMUST00000188847 - NO_TRANSLATION retained_intron ENSMUSG00000048874 Phf3 ENSMUST00000185521 - NO_TRANSLATION retained_intron ENSMUSG00000048874 Phf3 ENSMUST00000190190 - NO_TRANSLATION retained_intron ENSMUSG00000048874 Phf3 ENSMUST00000191064 ENSMUSP00000140746 TRANSLATION nonsense_mediated_decay - - 5 154.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048874 Phf3 ENSMUST00000191329 ENSMUSP00000139662 TRANSLATION protein_coding start - 3 111.0 0.0 2.33 0.0 68.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000048874 Phf3 ENSMUST00000088310 ENSMUSP00000085650 TRANSLATION protein_coding - CCDS35530.1 1 2025.0 7.0 6.43 0.0 249.1 0.0 -4,-5 1.0 27 18.0 PRINCIPAL:1 ENSMUSG00000048874 Phf3 ENSMUST00000186105 - NO_TRANSLATION retained_intron ENSMUSG00000048874 Phf3 ENSMUST00000187600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048874 Phf3 ENSMUST00000187316 - NO_TRANSLATION retained_intron ENSMUSG00000048874 Phf3 ENSMUST00000185604 - NO_TRANSLATION retained_intron ENSMUSG00000048874 Phf3 ENSMUST00000188780 ENSMUSP00000140935 TRANSLATION protein_coding stop - 2 199.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000048874 Phf3 ENSMUST00000191245 - NO_TRANSLATION retained_intron ENSMUSG00000048874 Phf3 ENSMUST00000186733 ENSMUSP00000139610 TRANSLATION protein_coding - CCDS35530.1 5 2025.0 7.0 6.43 0.0 249.1 0.0 -4,-5 1.0 27 18.0 PRINCIPAL:1 ENSMUSG00000044835 Ankrd45 ENSMUST00000111608 ENSMUSP00000107235 TRANSLATION protein_coding - - 1 248.0 0.0 3.83 2.1 43.8 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:2 ENSMUSG00000044835 Ankrd45 ENSMUST00000192384 ENSMUSP00000141322 TRANSLATION nonsense_mediated_decay - - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000044835 Ankrd45 ENSMUST00000052245 ENSMUSP00000059923 TRANSLATION protein_coding - CCDS48414.1 5 282.0 0.0 3.83 0.0 43.8 0.0 -4,-2 0.2433 3 8.0 ALTERNATIVE:2 ENSMUSG00000044835 Ankrd45 ENSMUST00000125018 ENSMUSP00000117977 TRANSLATION protein_coding stop - 5 205.0 0.0 2.964 0.0 43.8 0.0 -4,-5 0.0016 2 -2.0 MINOR ENSMUSG00000044835 Ankrd45 ENSMUST00000150721 ENSMUSP00000142253 TRANSLATION nonsense_mediated_decay - - 3 49.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000013997 Nit1 ENSMUST00000141357 - NO_TRANSLATION retained_intron ENSMUSG00000013997 Nit1 ENSMUST00000111296 ENSMUSP00000106927 TRANSLATION protein_coding - - 5 239.0 12.0 4.33 1.0 163.7 0.0 -4,0 0.0096 9 9.336 MINOR ENSMUSG00000013997 Nit1 ENSMUST00000146428 - NO_TRANSLATION retained_intron ENSMUSG00000013997 Nit1 ENSMUST00000136339 - NO_TRANSLATION retained_intron ENSMUSG00000013997 Nit1 ENSMUST00000148339 ENSMUSP00000119171 TRANSLATION protein_coding stop - 3 87.0 2.0 1.33 0.0 49.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000013997 Nit1 ENSMUST00000111289 ENSMUSP00000106920 TRANSLATION protein_coding - CCDS56656.1 1 290.0 13.0 5.33 10.3 246.8 0.0 -4,-7 1.0 14 17.0 PRINCIPAL:4 ENSMUSG00000013997 Nit1 ENSMUST00000111295 ENSMUSP00000106926 TRANSLATION protein_coding - CCDS35775.1 1 323.0 13.0 5.33 9.1 246.8 0.0 -4,0 0.8847 14 16.613 ALTERNATIVE:1 ENSMUSG00000013997 Nit1 ENSMUST00000156856 ENSMUSP00000116835 TRANSLATION protein_coding stop - 3 132.0 5.0 2.58 0.0 90.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000026327 Serpinb11 ENSMUST00000191425 ENSMUSP00000141180 TRANSLATION protein_coding stop - 5 152.0 0.0 2.7 0.0 117.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026327 Serpinb11 ENSMUST00000027566 ENSMUSP00000027566 TRANSLATION protein_coding - CCDS15218.1 1 388.0 0.0 5.3 10.4 400.7 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000013698 Pea15a ENSMUST00000155109 ENSMUSP00000117735 TRANSLATION protein_coding stop - 3 92.0 0.0 2.75 0.0 72.0 0.0 -4,-5 0.0007 5 -2.0 MINOR ENSMUSG00000013698 Pea15a ENSMUST00000152432 - NO_TRANSLATION retained_intron ENSMUSG00000013698 Pea15a ENSMUST00000125361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013698 Pea15a ENSMUST00000111247 ENSMUSP00000106878 TRANSLATION protein_coding - - 3 108.0 0.0 3.25 2.9 0.0 0.0 -4,-5 0.0282 4 4.744 MINOR ENSMUSG00000013698 Pea15a ENSMUST00000013842 ENSMUSP00000013842 TRANSLATION protein_coding - CCDS15510.1 1 130.0 0.0 4.0 31.9 72.0 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000042800 Spata46 ENSMUST00000056991 ENSMUSP00000062245 TRANSLATION protein_coding - CCDS15471.1 1 204.0 3.0 0.5 3.2 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000026110 Mgat4a ENSMUST00000154819 ENSMUSP00000121181 TRANSLATION protein_coding - CCDS69882.1 1 526.0 0.0 9.5765 7.4 452.2 0.0 -1,-5 0.5395 4 12.728 MINOR ENSMUSG00000026110 Mgat4a ENSMUST00000143636 ENSMUSP00000122909 TRANSLATION protein_coding - - 1 397.0 0.0 9.0765 0.0 407.0 0.0 -4,-6 0.0079 1 8.286 MINOR ENSMUSG00000026110 Mgat4a ENSMUST00000194660 - NO_TRANSLATION retained_intron ENSMUSG00000026110 Mgat4a ENSMUST00000149791 ENSMUSP00000115778 TRANSLATION nonsense_mediated_decay - - 5 67.0 0.0 1.0 0.0 52.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026110 Mgat4a ENSMUST00000195598 - NO_TRANSLATION retained_intron ENSMUSG00000026110 Mgat4a ENSMUST00000151952 ENSMUSP00000114175 TRANSLATION protein_coding - CCDS14893.1 1 535.0 0.0 9.5765 36.2 452.2 0.0 -1,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000026110 Mgat4a ENSMUST00000042161 ENSMUSP00000038894 TRANSLATION protein_coding - CCDS14893.1 1 535.0 0.0 9.5765 36.2 452.2 0.0 -1,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000026110 Mgat4a ENSMUST00000148047 ENSMUSP00000118692 TRANSLATION protein_coding stop - 3 112.0 0.0 2.85 0.0 170.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000013275 Slc41a1 ENSMUST00000146360 - NO_TRANSLATION retained_intron ENSMUSG00000013275 Slc41a1 ENSMUST00000086559 ENSMUSP00000083747 TRANSLATION protein_coding - CCDS15275.1 1 512.0 0.0 8.5 19.4 193.8 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000013275 Slc41a1 ENSMUST00000132585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042429 Adora1 ENSMUST00000038191 ENSMUSP00000043522 TRANSLATION protein_coding - CCDS15305.1 1 326.0 0.0 3.0 9.9 171.3 8.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042429 Adora1 ENSMUST00000187631 ENSMUSP00000140801 TRANSLATION protein_coding stop - 3 178.0 0.0 2.0 0.0 101.5 5.0 -4,-5 0.0036 - -2.0 MINOR ENSMUSG00000042429 Adora1 ENSMUST00000086465 ENSMUSP00000083656 TRANSLATION protein_coding - CCDS15305.1 1 326.0 0.0 3.0 9.9 171.3 8.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004451 Ralb ENSMUST00000156213 - NO_TRANSLATION retained_intron ENSMUSG00000004451 Ralb ENSMUST00000004565 ENSMUSP00000004565 TRANSLATION protein_coding - CCDS15225.1 1 206.0 25.0 4.5 36.9 182.4 0.0 -4,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000004451 Ralb ENSMUST00000142945 ENSMUSP00000119849 TRANSLATION protein_coding start - 3 149.0 12.0 2.0 0.0 122.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026107 Nabp1 ENSMUST00000190103 ENSMUSP00000140556 TRANSLATION nonsense_mediated_decay - CCDS35559.1 2 198.0 0.0 3.5 8.7 0.0 0.0 -4,-5 1.0 2 -2.0 MINOR ENSMUSG00000026107 Nabp1 ENSMUST00000189542 ENSMUSP00000140059 TRANSLATION nonsense_mediated_decay - CCDS78580.1 1 118.0 0.0 1.5 6.1 0.0 0.0 -4,-5 0.6088 2 -2.0 MINOR ENSMUSG00000026107 Nabp1 ENSMUST00000188204 ENSMUSP00000140469 TRANSLATION protein_coding - CCDS78580.1 1 118.0 0.0 1.5 6.1 0.0 0.0 -4,-5 0.6088 2 3.984 MINOR ENSMUSG00000026107 Nabp1 ENSMUST00000188303 - NO_TRANSLATION retained_intron ENSMUSG00000026107 Nabp1 ENSMUST00000186003 ENSMUSP00000140126 TRANSLATION nonsense_mediated_decay - CCDS78580.1 2 118.0 0.0 1.5 6.1 0.0 0.0 -4,-5 0.6088 - -2.0 MINOR ENSMUSG00000026107 Nabp1 ENSMUST00000185961 - NO_TRANSLATION retained_intron ENSMUSG00000026107 Nabp1 ENSMUST00000185534 ENSMUSP00000140557 TRANSLATION protein_coding - CCDS78580.1 2 118.0 0.0 1.5 6.1 0.0 0.0 -4,-5 0.6088 2 3.984 MINOR ENSMUSG00000026107 Nabp1 ENSMUST00000188051 ENSMUSP00000139853 TRANSLATION protein_coding - CCDS78580.1 3 118.0 0.0 1.5 6.1 0.0 0.0 -4,-5 0.6088 2 3.984 MINOR ENSMUSG00000026107 Nabp1 ENSMUST00000027279 ENSMUSP00000027279 TRANSLATION protein_coding - CCDS35559.1 1 198.0 0.0 3.5 8.7 0.0 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000026107 Nabp1 ENSMUST00000186684 ENSMUSP00000140179 TRANSLATION protein_coding - CCDS78580.1 1 118.0 0.0 1.5 6.1 0.0 0.0 -4,-5 0.6088 2 3.984 MINOR ENSMUSG00000026499 Acbd3 ENSMUST00000027780 ENSMUSP00000027780 TRANSLATION protein_coding - CCDS15572.1 1 525.0 0.0 2.33 2.4 285.6 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000026499 Acbd3 ENSMUST00000192420 - NO_TRANSLATION retained_intron ENSMUSG00000026457 Adipor1 ENSMUST00000156433 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026457 Adipor1 ENSMUST00000027727 ENSMUSP00000027727 TRANSLATION protein_coding - CCDS15309.1 1 375.0 0.0 5.0 21.7 245.7 7.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026457 Adipor1 ENSMUST00000112237 ENSMUSP00000107856 TRANSLATION protein_coding - CCDS15309.1 1 375.0 0.0 5.0 21.7 245.7 7.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000026457 Adipor1 ENSMUST00000148822 - NO_TRANSLATION retained_intron ENSMUSG00000026694 Mettl13 ENSMUST00000161760 - NO_TRANSLATION retained_intron ENSMUSG00000026694 Mettl13 ENSMUST00000159255 - NO_TRANSLATION retained_intron ENSMUSG00000026694 Mettl13 ENSMUST00000195027 - NO_TRANSLATION retained_intron ENSMUSG00000026694 Mettl13 ENSMUST00000176689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026694 Mettl13 ENSMUST00000159316 ENSMUSP00000135822 TRANSLATION nonsense_mediated_decay start - 3 189.0 15.0 1.16 0.0 55.1 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000026694 Mettl13 ENSMUST00000159817 ENSMUSP00000124267 TRANSLATION nonsense_mediated_decay - - 5 234.0 16.0 1.03 0.0 54.3 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000026694 Mettl13 ENSMUST00000176220 ENSMUSP00000135879 TRANSLATION protein_coding start/stop - 5 239.0 22.0 2.15 0.0 22.5 0.0 -4,0 0.0004 3 -2.0 MINOR ENSMUSG00000026694 Mettl13 ENSMUST00000028017 ENSMUSP00000028017 TRANSLATION protein_coding - CCDS15420.1 1 698.0 38.0 4.78 14.0 83.0 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000090171 Ugt1a2 ENSMUST00000049289 ENSMUSP00000037258 TRANSLATION protein_coding - CCDS15141.1 1 533.0 19.0 5.0 2.1 815.6 0.0 4,-1 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000104158 Becn2 ENSMUST00000194391 ENSMUSP00000144267 TRANSLATION protein_coding - - - 442.0 0.0 0.5 0.0 311.9 0.0 -4,-6 0.204 - 8.0 ALTERNATIVE:2 ENSMUSG00000104158 Becn2 ENSMUST00000201297 ENSMUSP00000143887 TRANSLATION protein_coding - CCDS78757.1 1 447.0 0.0 0.5 0.0 311.9 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000006411 Nectin4 ENSMUST00000006578 ENSMUSP00000006578 TRANSLATION protein_coding - CCDS15493.1 1 508.0 0.0 3.935 8.7 147.9 2.0 1,-4 1.0 11 11.0 PRINCIPAL:3 ENSMUSG00000006411 Nectin4 ENSMUST00000111286 ENSMUSP00000106917 TRANSLATION protein_coding - CCDS15493.1 1 508.0 0.0 3.935 8.7 147.9 2.0 1,-4 1.0 11 11.0 PRINCIPAL:3 ENSMUSG00000006411 Nectin4 ENSMUST00000094325 ENSMUSP00000091883 TRANSLATION protein_coding - CCDS48442.1 1 483.0 0.0 3.935 8.7 147.9 2.0 1,-4 0.8945 10 11.0 ALTERNATIVE:1 ENSMUSG00000009905 Kdsr ENSMUST00000187319 - NO_TRANSLATION retained_intron ENSMUSG00000009905 Kdsr ENSMUST00000187617 - NO_TRANSLATION retained_intron ENSMUSG00000009905 Kdsr ENSMUST00000010049 ENSMUSP00000010049 TRANSLATION protein_coding - CCDS15210.1 1 332.0 28.0 8.75 7.9 195.3 0.0 1,-3 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000057335 Cep170 ENSMUST00000192927 ENSMUSP00000142032 TRANSLATION protein_coding start - 1 787.0 0.0 0.0 0.0 416.9 0.0 -4,-5 0.0108 14 -2.0 MINOR ENSMUSG00000057335 Cep170 ENSMUST00000192991 ENSMUSP00000141902 TRANSLATION protein_coding start - 5 346.0 0.0 0.0 0.0 371.9 0.0 -4,-7 0.0002 9 -2.0 MINOR ENSMUSG00000057335 Cep170 ENSMUST00000193765 - NO_TRANSLATION retained_intron ENSMUSG00000057335 Cep170 ENSMUST00000194984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057335 Cep170 ENSMUST00000192643 - NO_TRANSLATION retained_intron ENSMUSG00000057335 Cep170 ENSMUST00000195717 ENSMUSP00000141769 TRANSLATION protein_coding - CCDS48461.1 5 1578.0 0.0 4.08 0.4 928.2 0.0 -4,0 1.0 35 8.0 PRINCIPAL:2 ENSMUSG00000057335 Cep170 ENSMUST00000194371 ENSMUSP00000142131 TRANSLATION protein_coding start/stop - 3 158.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000057335 Cep170 ENSMUST00000057037 ENSMUSP00000059562 TRANSLATION protein_coding - CCDS48461.1 5 1578.0 0.0 4.08 0.4 928.2 0.0 -4,0 1.0 35 8.0 PRINCIPAL:2 ENSMUSG00000057335 Cep170 ENSMUST00000193098 - NO_TRANSLATION retained_intron ENSMUSG00000057335 Cep170 ENSMUST00000194263 ENSMUSP00000141720 TRANSLATION protein_coding stop - 2 91.0 0.0 2.75 0.0 60.5 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000057335 Cep170 ENSMUST00000194727 ENSMUSP00000141793 TRANSLATION protein_coding - - 5 1588.0 0.0 4.08 0.4 913.6 0.0 -4,0 0.6446 35 8.0 ALTERNATIVE:2 ENSMUSG00000057335 Cep170 ENSMUST00000192664 ENSMUSP00000141327 TRANSLATION protein_coding start - 1 296.0 0.0 0.0 0.0 324.2 0.0 -4,0 0.0007 8 -2.0 MINOR ENSMUSG00000057335 Cep170 ENSMUST00000192961 ENSMUSP00000142271 TRANSLATION protein_coding - - 1 236.0 0.0 4.08 0.0 60.5 0.0 -4,0 0.0626 9 7.5 MINOR ENSMUSG00000057335 Cep170 ENSMUST00000194489 - NO_TRANSLATION retained_intron ENSMUSG00000057335 Cep170 ENSMUST00000195433 ENSMUSP00000142108 TRANSLATION nonsense_mediated_decay - - 5 96.0 0.0 2.75 0.0 60.5 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000026032 Ndufb3 ENSMUST00000027193 ENSMUSP00000027193 TRANSLATION protein_coding - CCDS14977.1 1 104.0 0.0 2.0 1.7 77.8 0.0 -4,-5 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000001138 Cnnm3 ENSMUST00000001166 ENSMUSP00000001166 TRANSLATION protein_coding - CCDS14880.1 1 713.0 14.0 4.35 0.1 20.6 3.0 2,-2 1.0 16 14.0 PRINCIPAL:2 ENSMUSG00000001138 Cnnm3 ENSMUST00000195264 - NO_TRANSLATION retained_intron ENSMUSG00000001138 Cnnm3 ENSMUST00000154225 - NO_TRANSLATION retained_intron ENSMUSG00000001138 Cnnm3 ENSMUST00000097776 ENSMUSP00000095383 TRANSLATION protein_coding - CCDS14881.1 1 708.0 14.0 4.35 0.1 20.6 3.0 2,-2 0.6546 14 14.0 ALTERNATIVE:2 ENSMUSG00000001138 Cnnm3 ENSMUST00000135100 - NO_TRANSLATION retained_intron ENSMUSG00000027520 Zdbf2 ENSMUST00000239483 ENSMUSP00000159296 TRANSLATION protein_coding - - - 2498.0 4.0 0.0 0.0 26.8 0.0 -4,-2 0.908 11 10.0 PRINCIPAL:1 ENSMUSG00000027520 Zdbf2 ENSMUST00000029025 ENSMUSP00000029025 TRANSLATION protein_coding - CCDS48278.1 1 2493.0 1.0 0.0 0.0 0.0 0.0 -4,-7 0.4634 11 1.0 MINOR ENSMUSG00000027520 Zdbf2 ENSMUST00000114132 ENSMUSP00000109767 TRANSLATION protein_coding - CCDS48278.1 5 2493.0 1.0 0.0 0.0 0.0 0.0 -4,-7 0.4634 11 1.0 MINOR ENSMUSG00000027520 Zdbf2 ENSMUST00000126932 ENSMUSP00000116403 TRANSLATION protein_coding stop - 3 50.0 1.0 0.0 0.0 0.0 0.0 -4,-7 0.0013 1 -2.0 MINOR ENSMUSG00000026470 Stx6 ENSMUST00000027743 ENSMUSP00000027743 TRANSLATION protein_coding - CCDS35741.1 1 255.0 0.0 5.4 13.4 179.2 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000026470 Stx6 ENSMUST00000192519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026470 Stx6 ENSMUST00000195693 - NO_TRANSLATION retained_intron ENSMUSG00000026470 Stx6 ENSMUST00000195302 ENSMUSP00000142089 TRANSLATION protein_coding - - 1 255.0 0.0 5.1 0.0 130.9 0.0 -4,-5 0.1826 9 8.502 MINOR ENSMUSG00000026470 Stx6 ENSMUST00000192311 - NO_TRANSLATION retained_intron ENSMUSG00000026470 Stx6 ENSMUST00000192091 - NO_TRANSLATION retained_intron ENSMUSG00000026470 Stx6 ENSMUST00000194158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026470 Stx6 ENSMUST00000193059 ENSMUSP00000141976 TRANSLATION nonsense_mediated_decay - - 5 199.0 0.0 4.1 0.0 130.9 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000026470 Stx6 ENSMUST00000192690 ENSMUSP00000141362 TRANSLATION protein_coding start - 1 91.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026470 Stx6 ENSMUST00000191769 - NO_TRANSLATION retained_intron ENSMUSG00000026235 Epha4 ENSMUST00000187346 ENSMUSP00000140631 TRANSLATION protein_coding start - 3 117.0 0.0 2.0 0.0 77.9 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000026235 Epha4 ENSMUST00000186930 ENSMUSP00000140370 TRANSLATION protein_coding stop - 5 177.0 0.0 2.2 0.0 61.0 0.0 3,-2 0.0 1 -2.0 MINOR ENSMUSG00000026235 Epha4 ENSMUST00000027451 ENSMUSP00000027451 TRANSLATION protein_coding - CCDS35627.1 1 986.0 18.0 13.674 29.9 836.0 1.0 3,-2 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000026235 Epha4 ENSMUST00000188952 ENSMUSP00000139640 TRANSLATION nonsense_mediated_decay - CCDS35627.1 1 986.0 18.0 13.674 29.9 836.0 1.0 3,-2 1.0 - -2.0 MINOR ENSMUSG00000026235 Epha4 ENSMUST00000189934 - NO_TRANSLATION retained_intron ENSMUSG00000026235 Epha4 ENSMUST00000190149 ENSMUSP00000140408 TRANSLATION nonsense_mediated_decay - - 5 38.0 0.0 0.2 0.0 0.0 0.0 3,-2 0.0007 - -2.0 MINOR ENSMUSG00000026235 Epha4 ENSMUST00000188797 ENSMUSP00000140954 TRANSLATION protein_coding - CCDS35627.1 1 986.0 18.0 13.674 29.9 836.0 1.0 3,-2 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000037849 Ifi206 ENSMUST00000169797 ENSMUSP00000133809 TRANSLATION protein_coding stop - 5 143.0 0.0 2.0 0.0 208.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037849 Ifi206 ENSMUST00000160565 ENSMUSP00000134646 TRANSLATION protein_coding - - 5 921.0 0.0 4.5 0.0 288.1 0.0 -4,-5 0.8359 1 12.0 PRINCIPAL:1 ENSMUSG00000026420 Il24 ENSMUST00000121040 ENSMUSP00000113064 TRANSLATION protein_coding - - 1 181.0 0.0 4.38 1.0 27.7 0.0 2,-2 0.8166 - 12.0 PRINCIPAL:1 ENSMUSG00000026420 Il24 ENSMUST00000187650 ENSMUSP00000140149 TRANSLATION protein_coding - - 1 181.0 0.0 4.38 1.0 27.7 0.0 2,-2 0.8166 - 12.0 PRINCIPAL:1 ENSMUSG00000026420 Il24 ENSMUST00000191279 ENSMUSP00000140821 TRANSLATION nonsense_mediated_decay - - 1 119.0 0.0 1.55 0.0 0.0 0.0 2,-2 0.0049 - -2.0 MINOR ENSMUSG00000026420 Il24 ENSMUST00000188148 ENSMUSP00000139907 TRANSLATION protein_coding stop - 5 77.0 0.0 1.55 0.0 0.0 0.0 2,-2 0.0068 - -2.0 MINOR ENSMUSG00000066842 Hmcn1 ENSMUST00000074783 ENSMUSP00000074340 TRANSLATION protein_coding - CCDS15357.2 5 5634.0 19.0 58.01 7.5 2974.0 0.0 1,-3 1.0 25 14.002 PRINCIPAL:4 ENSMUSG00000066842 Hmcn1 ENSMUST00000137197 ENSMUSP00000121500 TRANSLATION protein_coding - - 5 5517.0 22.0 57.81 6.4 2946.7 0.0 1,-3 0.8377 25 14.66 ALTERNATIVE:1 ENSMUSG00000066842 Hmcn1 ENSMUST00000155715 - NO_TRANSLATION retained_intron ENSMUSG00000066842 Hmcn1 ENSMUST00000137909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066842 Hmcn1 ENSMUST00000177036 ENSMUSP00000134985 TRANSLATION protein_coding start - 5 155.0 22.0 2.78 0.0 126.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066842 Hmcn1 ENSMUST00000151899 - NO_TRANSLATION retained_intron ENSMUSG00000026331 Slco6c1 ENSMUST00000189547 ENSMUSP00000140791 TRANSLATION protein_coding - - 1 689.0 0.0 0.0 0.0 386.7 8.0 -4,-5 0.417 1 2.0 ALTERNATIVE:2 ENSMUSG00000026331 Slco6c1 ENSMUST00000027569 ENSMUSP00000027569 TRANSLATION protein_coding - CCDS35677.1 1 706.0 0.0 0.0 0.0 403.0 8.0 -4,-5 0.5524 1 2.0 PRINCIPAL:4 ENSMUSG00000113925 Gm7544 ENSMUST00000222426 ENSMUSP00000152303 TRANSLATION protein_coding - - - 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000079465 Col4a3 ENSMUST00000141994 - NO_TRANSLATION retained_intron ENSMUSG00000079465 Col4a3 ENSMUST00000125563 ENSMUSP00000137944 TRANSLATION nonsense_mediated_decay start - 5 61.0 0.0 1.132 0.0 50.5 0.0 -4,0 0.0004 1 -2.0 MINOR ENSMUSG00000079465 Col4a3 ENSMUST00000152664 ENSMUSP00000119094 TRANSLATION protein_coding start - 5 197.0 0.0 3.08 0.0 169.8 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000079465 Col4a3 ENSMUST00000113457 ENSMUSP00000109084 TRANSLATION protein_coding - CCDS35631.1 1 1669.0 1.0 12.0565 2.5 772.2 0.0 3,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000025995 Wdr75 ENSMUST00000143737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025995 Wdr75 ENSMUST00000154436 - NO_TRANSLATION retained_intron ENSMUSG00000025995 Wdr75 ENSMUST00000135662 - NO_TRANSLATION retained_intron ENSMUSG00000025995 Wdr75 ENSMUST00000186651 ENSMUSP00000140008 TRANSLATION protein_coding start - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025995 Wdr75 ENSMUST00000147308 ENSMUSP00000117363 TRANSLATION protein_coding stop - 2 151.0 0.0 2.325 0.0 31.0 0.0 -4,-1 0.0009 2 -2.0 MINOR ENSMUSG00000025995 Wdr75 ENSMUST00000027139 ENSMUSP00000027139 TRANSLATION protein_coding - CCDS14932.1 1 830.0 0.0 5.237 11.4 64.6 0.0 -4,-1 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000025995 Wdr75 ENSMUST00000146602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025995 Wdr75 ENSMUST00000186308 - NO_TRANSLATION retained_intron ENSMUSG00000025995 Wdr75 ENSMUST00000142145 - NO_TRANSLATION retained_intron ENSMUSG00000016918 Sulf1 ENSMUST00000189447 - NO_TRANSLATION retained_intron ENSMUSG00000016918 Sulf1 ENSMUST00000185780 ENSMUSP00000140517 TRANSLATION protein_coding start - 1 372.0 0.0 1.14 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000016918 Sulf1 ENSMUST00000187376 - NO_TRANSLATION retained_intron ENSMUSG00000016918 Sulf1 ENSMUST00000180062 ENSMUSP00000136014 TRANSLATION protein_coding - CCDS14820.1 1 870.0 5.0 6.34 14.5 372.5 0.0 2,-3 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000016918 Sulf1 ENSMUST00000186405 ENSMUSP00000140891 TRANSLATION protein_coding stop - 1 37.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0019 - -2.0 MINOR ENSMUSG00000016918 Sulf1 ENSMUST00000186051 ENSMUSP00000141153 TRANSLATION protein_coding - - 1 862.0 5.0 6.34 1.5 372.5 0.0 2,-3 0.3739 4 17.148 MINOR ENSMUSG00000016918 Sulf1 ENSMUST00000189541 ENSMUSP00000140640 TRANSLATION protein_coding stop - 3 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0211 - -2.0 MINOR ENSMUSG00000016918 Sulf1 ENSMUST00000177608 ENSMUSP00000137523 TRANSLATION protein_coding - CCDS14820.1 1 870.0 5.0 6.34 14.5 372.5 0.0 2,-3 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000016918 Sulf1 ENSMUST00000088585 ENSMUSP00000085949 TRANSLATION protein_coding - CCDS14820.1 1 870.0 5.0 6.34 14.5 372.5 0.0 2,-3 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000016918 Sulf1 ENSMUST00000186674 - NO_TRANSLATION retained_intron ENSMUSG00000026313 Hdac4 ENSMUST00000097644 ENSMUSP00000095249 TRANSLATION protein_coding - CCDS48324.1 1 1076.0 7.0 11.85 0.0 395.4 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000026313 Hdac4 ENSMUST00000212408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026313 Hdac4 ENSMUST00000187622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026313 Hdac4 ENSMUST00000185267 - NO_TRANSLATION retained_intron ENSMUSG00000026313 Hdac4 ENSMUST00000189730 - NO_TRANSLATION retained_intron ENSMUSG00000026313 Hdac4 ENSMUST00000185341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026313 Hdac4 ENSMUST00000008995 ENSMUSP00000008995 TRANSLATION protein_coding - CCDS48324.1 1 1076.0 7.0 11.85 0.0 395.4 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000026313 Hdac4 ENSMUST00000187308 ENSMUSP00000140092 TRANSLATION protein_coding start/stop - 5 312.0 6.0 5.75 0.0 192.3 0.0 -4,-5 0.0028 7 -2.0 MINOR ENSMUSG00000026313 Hdac4 ENSMUST00000191327 - NO_TRANSLATION retained_intron ENSMUSG00000026313 Hdac4 ENSMUST00000189303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026313 Hdac4 ENSMUST00000186002 ENSMUSP00000141018 TRANSLATION protein_coding stop - 3 112.0 0.0 1.0 0.0 84.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026313 Hdac4 ENSMUST00000212867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073658 Crygb ENSMUST00000027090 ENSMUSP00000027090 TRANSLATION protein_coding - CCDS15013.1 1 175.0 4.0 2.0 23.7 218.7 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000026442 Nfasc ENSMUST00000186389 ENSMUSP00000140480 TRANSLATION protein_coding start/stop - 5 1159.0 0.0 16.17 0.0 490.6 3.0 -4,-5 0.2225 36 -2.0 MINOR ENSMUSG00000026442 Nfasc ENSMUST00000188307 ENSMUSP00000139520 TRANSLATION protein_coding - - 1 899.0 0.0 14.17 0.0 338.1 0.0 4,-1 0.0094 32 1.998 MINOR ENSMUSG00000026442 Nfasc ENSMUST00000094569 ENSMUSP00000092148 TRANSLATION protein_coding - CCDS35707.1 1 1240.0 0.0 14.836 3.6 492.7 3.0 4,-1 0.7827 32 8.614 MINOR ENSMUSG00000026442 Nfasc ENSMUST00000043189 ENSMUSP00000035454 TRANSLATION protein_coding - CCDS48358.1 1 1157.0 0.0 15.77 2.6 490.6 3.0 4,-1 0.7534 33 9.975 MINOR ENSMUSG00000026442 Nfasc ENSMUST00000186330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026442 Nfasc ENSMUST00000186539 - NO_TRANSLATION retained_intron ENSMUSG00000026442 Nfasc ENSMUST00000187861 ENSMUSP00000139955 TRANSLATION protein_coding - - 5 1347.0 0.0 16.036 2.8 521.3 3.0 4,-1 1.0 35 12.422 PRINCIPAL:1 ENSMUSG00000026442 Nfasc ENSMUST00000189219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026442 Nfasc ENSMUST00000163770 ENSMUSP00000132979 TRANSLATION protein_coding - CCDS48359.1 5 1174.0 0.0 15.97 3.6 490.6 3.0 4,-1 0.8744 35 10.756 MINOR ENSMUSG00000026442 Nfasc ENSMUST00000191294 - NO_TRANSLATION retained_intron ENSMUSG00000040170 Fmo2 ENSMUST00000045902 ENSMUSP00000044405 TRANSLATION protein_coding - CCDS15425.1 1 535.0 40.0 7.75 14.2 973.4 1.0 -4,-7 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000040170 Fmo2 ENSMUST00000194061 - NO_TRANSLATION retained_intron ENSMUSG00000040170 Fmo2 ENSMUST00000143123 ENSMUSP00000114226 TRANSLATION protein_coding stop - 2 161.0 24.0 3.0 0.0 325.6 0.0 -4,-7 0.0007 6 -2.0 MINOR ENSMUSG00000040170 Fmo2 ENSMUST00000111510 ENSMUSP00000107135 TRANSLATION protein_coding - CCDS15425.1 1 535.0 40.0 7.75 14.2 973.4 1.0 -4,-7 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000040170 Fmo2 ENSMUST00000156860 - NO_TRANSLATION retained_intron ENSMUSG00000040170 Fmo2 ENSMUST00000194197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040170 Fmo2 ENSMUST00000147617 - NO_TRANSLATION retained_intron ENSMUSG00000039384 Dusp10 ENSMUST00000048655 ENSMUSP00000045838 TRANSLATION protein_coding - CCDS15591.1 1 483.0 8.0 2.5 21.6 192.2 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000039384 Dusp10 ENSMUST00000139839 ENSMUSP00000121433 TRANSLATION protein_coding stop - 3 145.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042596 Tfap2d ENSMUST00000037294 ENSMUSP00000037699 TRANSLATION protein_coding - CCDS14838.1 1 452.0 0.0 5.0 32.2 286.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042596 Tfap2d ENSMUST00000149505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036500 Akp3 ENSMUST00000044878 ENSMUSP00000037497 TRANSLATION protein_coding - CCDS15127.1 1 559.0 12.0 9.9 0.0 610.1 0.0 4,-1 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000036500 Akp3 ENSMUST00000187662 - NO_TRANSLATION retained_intron ENSMUSG00000038179 Slamf7 ENSMUST00000192195 ENSMUSP00000141871 TRANSLATION protein_coding - CCDS15500.1 1 333.0 0.0 0.966 0.4 0.0 2.0 1,-3 0.8726 6 6.0 PRINCIPAL:4 ENSMUSG00000038179 Slamf7 ENSMUST00000111276 ENSMUSP00000106907 TRANSLATION protein_coding - CCDS15500.1 1 333.0 0.0 0.966 0.4 0.0 2.0 1,-3 0.8726 6 6.0 PRINCIPAL:4 ENSMUSG00000038179 Slamf7 ENSMUST00000194531 ENSMUSP00000141259 TRANSLATION protein_coding - - 1 335.0 0.0 0.966 0.0 0.0 2.0 1,-3 0.7745 6 6.0 ALTERNATIVE:2 ENSMUSG00000038179 Slamf7 ENSMUST00000192024 ENSMUSP00000141426 TRANSLATION protein_coding - CCDS83636.1 1 294.0 0.0 0.966 0.4 0.0 2.0 1,-3 0.6028 5 6.0 ALTERNATIVE:2 ENSMUSG00000038179 Slamf7 ENSMUST00000194791 ENSMUSP00000141601 TRANSLATION protein_coding - - 1 281.0 0.0 0.966 0.0 0.0 2.0 1,-3 0.2375 5 6.0 ALTERNATIVE:2 ENSMUSG00000038633 Degs1 ENSMUST00000132551 - NO_TRANSLATION retained_intron ENSMUSG00000038633 Degs1 ENSMUST00000035295 ENSMUSP00000048519 TRANSLATION protein_coding - CCDS15587.1 1 323.0 0.0 3.41 29.9 155.5 5.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038633 Degs1 ENSMUST00000133052 ENSMUSP00000119473 TRANSLATION protein_coding stop - 2 229.0 0.0 1.0 0.0 66.7 5.0 -1,-5 0.0058 - -2.0 MINOR ENSMUSG00000053333 Dis3l2 ENSMUST00000186682 - NO_TRANSLATION retained_intron ENSMUSG00000053333 Dis3l2 ENSMUST00000188121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053333 Dis3l2 ENSMUST00000168237 ENSMUSP00000132673 TRANSLATION protein_coding - CCDS48304.1 1 884.0 3.0 14.245 0.4 338.6 0.0 -4,-6 0.3812 25 14.25 MINOR ENSMUSG00000053333 Dis3l2 ENSMUST00000065694 ENSMUSP00000070506 TRANSLATION protein_coding - CCDS15124.1 1 870.0 3.0 14.62 1.1 338.6 0.0 -4,-6 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000053333 Dis3l2 ENSMUST00000190618 ENSMUSP00000139579 TRANSLATION nonsense_mediated_decay - - 1 123.0 0.0 2.3 0.0 0.0 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000053333 Dis3l2 ENSMUST00000189044 - NO_TRANSLATION retained_intron ENSMUSG00000041889 Shisa4 ENSMUST00000159918 - NO_TRANSLATION retained_intron ENSMUSG00000041889 Shisa4 ENSMUST00000041240 ENSMUSP00000046033 TRANSLATION protein_coding - CCDS15319.1 1 197.0 0.0 2.0 3.1 45.4 0.0 4,-1 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000041889 Shisa4 ENSMUST00000159181 - NO_TRANSLATION retained_intron ENSMUSG00000049160 Tex50 ENSMUST00000178511 ENSMUSP00000154579 TRANSLATION protein_coding - - 3 189.0 0.0 0.0 0.1 0.0 1.0 2,-2 0.6343 1 0.0 PRINCIPAL:1 ENSMUSG00000049160 Tex50 ENSMUST00000135643 ENSMUSP00000154416 TRANSLATION protein_coding - - 2 189.0 0.0 0.0 0.1 0.0 1.0 2,-2 0.6343 1 0.0 PRINCIPAL:1 ENSMUSG00000004707 Ly9 ENSMUST00000068878 ENSMUSP00000069319 TRANSLATION protein_coding - CCDS35779.1 1 654.0 0.0 1.6 1.1 31.9 1.0 -4,-7 1.0 8 9.0 PRINCIPAL:2 ENSMUSG00000004707 Ly9 ENSMUST00000146596 - NO_TRANSLATION retained_intron ENSMUSG00000004707 Ly9 ENSMUST00000111277 ENSMUSP00000106908 TRANSLATION protein_coding - - 1 636.0 0.0 1.6 0.0 31.9 1.0 -4,-7 0.1684 8 8.0 ALTERNATIVE:2 ENSMUSG00000004707 Ly9 ENSMUST00000143463 ENSMUSP00000137924 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000004707 Ly9 ENSMUST00000004827 ENSMUSP00000004827 TRANSLATION protein_coding - CCDS69978.1 1 544.0 0.0 0.7 1.0 31.9 1.0 -4,-7 0.2456 6 4.622 MINOR ENSMUSG00000026514 Cnih3 ENSMUST00000209607 ENSMUSP00000148015 TRANSLATION protein_coding - - 5 187.0 0.0 3.665 0.7 122.6 7.0 0,-4 0.0661 - 10.668 MINOR ENSMUSG00000026514 Cnih3 ENSMUST00000027795 ENSMUSP00000027795 TRANSLATION protein_coding - CCDS48470.1 1 160.0 0.0 4.33 35.8 117.0 7.0 0,-4 1.0 - 15.664 PRINCIPAL:1 ENSMUSG00000026514 Cnih3 ENSMUST00000162685 ENSMUSP00000124247 TRANSLATION protein_coding - CCDS48471.1 5 112.0 0.0 3.33 3.0 72.8 6.0 0,-4 0.0556 - 7.242 MINOR ENSMUSG00000026514 Cnih3 ENSMUST00000161880 ENSMUSP00000124611 TRANSLATION protein_coding - CCDS35810.1 1 179.0 0.0 3.83 0.7 122.6 7.0 0,-4 0.1577 - 10.998 MINOR ENSMUSG00000052748 Swt1 ENSMUST00000111883 ENSMUSP00000107514 TRANSLATION nonsense_mediated_decay - - 2 679.0 0.0 1.314 0.0 101.0 0.0 -4,-5 0.0899 2 -2.0 MINOR ENSMUSG00000052748 Swt1 ENSMUST00000064771 ENSMUSP00000067516 TRANSLATION protein_coding - CCDS15360.1 1 907.0 0.0 1.314 0.1 101.0 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000052748 Swt1 ENSMUST00000129939 ENSMUSP00000120483 TRANSLATION protein_coding start/stop - 5 251.0 0.0 1.114 0.0 69.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000052748 Swt1 ENSMUST00000139244 - NO_TRANSLATION retained_intron ENSMUSG00000052748 Swt1 ENSMUST00000185247 - NO_TRANSLATION retained_intron ENSMUSG00000052748 Swt1 ENSMUST00000131312 - NO_TRANSLATION retained_intron ENSMUSG00000052748 Swt1 ENSMUST00000189595 - NO_TRANSLATION retained_intron ENSMUSG00000052748 Swt1 ENSMUST00000138095 - NO_TRANSLATION retained_intron ENSMUSG00000052748 Swt1 ENSMUST00000141977 ENSMUSP00000117424 TRANSLATION protein_coding start/stop - 3 174.0 0.0 0.2 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000052748 Swt1 ENSMUST00000124880 - NO_TRANSLATION retained_intron ENSMUSG00000067604 Nms ENSMUST00000088029 ENSMUSP00000085346 TRANSLATION protein_coding - CCDS14902.1 1 153.0 0.0 0.0 3.3 0.0 0.0 -1,-3 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000067604 Nms ENSMUST00000160214 ENSMUSP00000125166 TRANSLATION protein_coding stop - 5 138.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0412 - -2.0 MINOR ENSMUSG00000026394 Atp6v1g3 ENSMUST00000027643 ENSMUSP00000027643 TRANSLATION protein_coding - CCDS15331.1 1 118.0 0.0 2.75 36.9 120.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026170 Cyp27a1 ENSMUST00000027356 ENSMUSP00000027356 TRANSLATION protein_coding - CCDS15054.1 1 533.0 28.0 6.99 10.3 354.2 0.0 -4,0 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000026170 Cyp27a1 ENSMUST00000189083 - NO_TRANSLATION retained_intron ENSMUSG00000026170 Cyp27a1 ENSMUST00000190781 - NO_TRANSLATION retained_intron ENSMUSG00000056870 Gulp1 ENSMUST00000162600 ENSMUSP00000124756 TRANSLATION protein_coding - - 5 299.0 0.0 5.132 12.0 110.9 0.0 -4,-6 0.6428 7 13.092 MINOR ENSMUSG00000056870 Gulp1 ENSMUST00000159555 ENSMUSP00000124835 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.132 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000056870 Gulp1 ENSMUST00000161066 ENSMUSP00000125346 TRANSLATION protein_coding stop - 3 14.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056870 Gulp1 ENSMUST00000160854 ENSMUSP00000125506 TRANSLATION protein_coding - - 1 309.0 0.0 5.462 0.0 110.9 0.0 -4,-6 0.0814 7 12.0 MINOR ENSMUSG00000056870 Gulp1 ENSMUST00000074525 ENSMUSP00000074115 TRANSLATION protein_coding - CCDS48250.1 1 304.0 0.0 5.462 26.1 110.9 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000056870 Gulp1 ENSMUST00000161793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000100617 Gm7145 ENSMUST00000185381 ENSMUSP00000140916 TRANSLATION protein_coding - - 3 360.0 36.0 1.0 0.0 319.9 0.0 -4,-7 0.8321 - 18.0 PRINCIPAL:1 ENSMUSG00000033845 Mrpl15 ENSMUST00000146665 ENSMUSP00000141204 TRANSLATION protein_coding - - 1 168.0 0.0 3.5 0.0 67.9 0.0 -4,-1 0.0 6 6.156 MINOR ENSMUSG00000033845 Mrpl15 ENSMUST00000132625 - NO_TRANSLATION retained_intron ENSMUSG00000033845 Mrpl15 ENSMUST00000045689 ENSMUSP00000048472 TRANSLATION nonsense_mediated_decay - - 1 52.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0004 1 -2.0 MINOR ENSMUSG00000033845 Mrpl15 ENSMUST00000130201 ENSMUSP00000114649 TRANSLATION protein_coding - CCDS35504.1 1 204.0 0.0 4.5 0.1 98.0 0.0 -4,-1 0.0688 7 10.002 MINOR ENSMUSG00000033845 Mrpl15 ENSMUST00000156816 ENSMUSP00000115512 TRANSLATION protein_coding - CCDS48211.1 1 295.0 0.0 5.5 30.1 98.0 0.0 -4,-1 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000033845 Mrpl15 ENSMUST00000192286 - NO_TRANSLATION retained_intron ENSMUSG00000033845 Mrpl15 ENSMUST00000115538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038702 Dsel ENSMUST00000035462 ENSMUSP00000043570 TRANSLATION protein_coding - CCDS35688.1 1 1207.0 0.0 0.5 6.7 37.9 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038702 Dsel ENSMUST00000189370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038702 Dsel ENSMUST00000186365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038702 Dsel ENSMUST00000189731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054702 Ap1s3 ENSMUST00000159312 ENSMUSP00000125119 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 1.198 0.0 70.5 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000054702 Ap1s3 ENSMUST00000162342 ENSMUSP00000125268 TRANSLATION protein_coding - CCDS35628.1 1 154.0 0.0 3.91 36.9 194.2 0.0 -4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000054702 Ap1s3 ENSMUST00000160706 ENSMUSP00000125631 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 1.3 0.0 70.1 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000027438 Napb ENSMUST00000028926 ENSMUSP00000028926 TRANSLATION protein_coding - CCDS16842.1 1 298.0 0.0 8.58 0.0 367.3 0.0 -4,-5 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000027438 Napb ENSMUST00000136513 ENSMUSP00000120979 TRANSLATION nonsense_mediated_decay - - 5 115.0 0.0 2.75 0.0 99.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000027438 Napb ENSMUST00000140647 - NO_TRANSLATION retained_intron ENSMUSG00000082882 Or4c100 ENSMUST00000216978 ENSMUSP00000151114 TRANSLATION protein_coding - CCDS16339.1 5 303.0 0.0 1.0 9.9 173.2 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000082882 Or4c100 ENSMUST00000215912 ENSMUSP00000150826 TRANSLATION protein_coding - CCDS16339.1 5 303.0 0.0 1.0 9.9 173.2 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000082882 Or4c100 ENSMUST00000121619 ENSMUSP00000149152 TRANSLATION protein_coding - CCDS16339.1 - 303.0 0.0 1.0 9.9 173.2 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050714 Zbtb26 ENSMUST00000067043 ENSMUSP00000070071 TRANSLATION protein_coding - CCDS16001.1 1 440.0 15.0 0.0 16.5 148.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000050714 Zbtb26 ENSMUST00000102789 ENSMUSP00000099850 TRANSLATION protein_coding - - 1 451.0 15.0 0.0 0.1 148.4 0.0 -4,-6 0.1039 - 12.0 MINOR ENSMUSG00000050714 Zbtb26 ENSMUST00000203522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054580 Pla2r1 ENSMUST00000112525 ENSMUSP00000108144 TRANSLATION protein_coding - CCDS16059.1 1 1487.0 9.0 16.216 0.0 501.2 0.0 4,-1 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000054580 Pla2r1 ENSMUST00000136034 - NO_TRANSLATION retained_intron ENSMUSG00000054580 Pla2r1 ENSMUST00000126327 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054580 Pla2r1 ENSMUST00000150373 - NO_TRANSLATION retained_intron ENSMUSG00000054580 Pla2r1 ENSMUST00000134583 - NO_TRANSLATION retained_intron ENSMUSG00000054580 Pla2r1 ENSMUST00000128208 - NO_TRANSLATION retained_intron ENSMUSG00000027176 Cstf3 ENSMUST00000124944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027176 Cstf3 ENSMUST00000122900 - NO_TRANSLATION retained_intron ENSMUSG00000027176 Cstf3 ENSMUST00000126539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027176 Cstf3 ENSMUST00000131761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027176 Cstf3 ENSMUST00000137961 - NO_TRANSLATION retained_intron ENSMUSG00000027176 Cstf3 ENSMUST00000028599 ENSMUSP00000028599 TRANSLATION protein_coding - CCDS16490.1 1 717.0 0.0 13.83 34.1 278.9 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000033808 Tmem87a ENSMUST00000124806 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033808 Tmem87a ENSMUST00000136410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033808 Tmem87a ENSMUST00000110729 ENSMUSP00000106357 TRANSLATION protein_coding - - 1 500.0 0.0 6.04 0.0 276.3 8.0 2,-2 0.0303 9 10.602 MINOR ENSMUSG00000033808 Tmem87a ENSMUST00000143182 - NO_TRANSLATION retained_intron ENSMUSG00000033808 Tmem87a ENSMUST00000090046 ENSMUSP00000087500 TRANSLATION protein_coding - CCDS50678.1 1 560.0 0.0 6.04 2.2 276.3 8.0 2,-2 0.7474 9 11.602 MINOR ENSMUSG00000033808 Tmem87a ENSMUST00000090042 ENSMUSP00000087496 TRANSLATION protein_coding - CCDS50677.1 1 559.0 0.0 6.55 2.2 282.6 7.0 2,-2 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000033808 Tmem87a ENSMUST00000151740 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068859 Sp9 ENSMUST00000090813 ENSMUSP00000088322 TRANSLATION protein_coding - CCDS16126.1 1 484.0 12.0 0.2 8.1 67.4 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000068859 Sp9 ENSMUST00000147133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023236 Scg5 ENSMUST00000024005 ENSMUSP00000024005 TRANSLATION protein_coding - CCDS16561.1 1 212.0 0.0 0.0 9.8 38.2 0.0 4,-1 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000023236 Scg5 ENSMUST00000139975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014873 Surf2 ENSMUST00000157066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014873 Surf2 ENSMUST00000143098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014873 Surf2 ENSMUST00000015017 ENSMUSP00000015017 TRANSLATION protein_coding - CCDS15816.1 1 257.0 0.0 2.8 4.5 314.7 0.0 -4,-6 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000014873 Surf2 ENSMUST00000125408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014873 Surf2 ENSMUST00000126947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014873 Surf2 ENSMUST00000135506 - NO_TRANSLATION retained_intron ENSMUSG00000061195 Or4f4b ENSMUST00000207494 ENSMUSP00000147119 TRANSLATION protein_coding - CCDS16527.1 - 298.0 0.0 1.0 0.0 152.2 6.0 -2,-5 0.2795 - 10.614 MINOR ENSMUSG00000061195 Or4f4b ENSMUST00000225425 - NO_TRANSLATION retained_intron ENSMUSG00000061195 Or4f4b ENSMUST00000120021 ENSMUSP00000146801 TRANSLATION protein_coding - - 5 326.0 0.0 1.3 1.0 152.2 6.0 -4,-6 0.8189 - 12.0 PRINCIPAL:1 ENSMUSG00000057914 Cacnb2 ENSMUST00000193522 ENSMUSP00000141742 TRANSLATION protein_coding start/stop - 5 143.0 0.0 3.886 0.0 66.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000057914 Cacnb2 ENSMUST00000193730 - NO_TRANSLATION retained_intron ENSMUSG00000057914 Cacnb2 ENSMUST00000193262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057914 Cacnb2 ENSMUST00000114719 ENSMUSP00000110367 TRANSLATION protein_coding - CCDS84473.1 1 611.0 0.0 9.24 21.7 247.0 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000057914 Cacnb2 ENSMUST00000144423 - NO_TRANSLATION retained_intron ENSMUSG00000057914 Cacnb2 ENSMUST00000156027 - NO_TRANSLATION retained_intron ENSMUSG00000057914 Cacnb2 ENSMUST00000114723 ENSMUSP00000110371 TRANSLATION protein_coding - CCDS15702.1 1 655.0 0.0 9.24 10.2 247.0 0.0 -4,-5 0.7946 10 13.776 MINOR ENSMUSG00000057914 Cacnb2 ENSMUST00000193452 - NO_TRANSLATION retained_intron ENSMUSG00000057914 Cacnb2 ENSMUST00000194921 - NO_TRANSLATION retained_intron ENSMUSG00000057914 Cacnb2 ENSMUST00000123719 - NO_TRANSLATION retained_intron ENSMUSG00000057914 Cacnb2 ENSMUST00000193800 ENSMUSP00000141221 TRANSLATION protein_coding - CCDS79735.1 1 605.0 0.0 9.24 8.6 247.0 0.0 -4,-6 0.6883 8 13.468 MINOR ENSMUSG00000057914 Cacnb2 ENSMUST00000114718 - NO_TRANSLATION retained_intron ENSMUSG00000057914 Cacnb2 ENSMUST00000195841 ENSMUSP00000142281 TRANSLATION protein_coding - - 3 72.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000057914 Cacnb2 ENSMUST00000191903 - NO_TRANSLATION retained_intron ENSMUSG00000057914 Cacnb2 ENSMUST00000148676 - NO_TRANSLATION retained_intron ENSMUSG00000057914 Cacnb2 ENSMUST00000137746 - NO_TRANSLATION retained_intron ENSMUSG00000023572 Ccndbp1 ENSMUST00000099489 ENSMUSP00000097088 TRANSLATION protein_coding - - 1 309.0 0.0 3.7225 0.0 248.6 0.0 -4,-5 0.0148 1 10.002 MINOR ENSMUSG00000023572 Ccndbp1 ENSMUST00000129717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023572 Ccndbp1 ENSMUST00000151532 - NO_TRANSLATION retained_intron ENSMUSG00000023572 Ccndbp1 ENSMUST00000099488 ENSMUSP00000097087 TRANSLATION protein_coding - - 1 375.0 0.0 3.8925 0.0 240.6 0.0 -4,-6 0.0109 1 9.858 MINOR ENSMUSG00000023572 Ccndbp1 ENSMUST00000060455 ENSMUSP00000062496 TRANSLATION protein_coding - CCDS38213.1 1 356.0 0.0 4.7225 1.4 248.6 0.0 -4,-6 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000023572 Ccndbp1 ENSMUST00000135036 - NO_TRANSLATION retained_intron ENSMUSG00000023572 Ccndbp1 ENSMUST00000171260 ENSMUSP00000125961 TRANSLATION protein_coding - - 5 359.0 0.0 3.8925 0.0 240.6 0.0 -4,-6 0.0441 1 9.858 MINOR ENSMUSG00000023572 Ccndbp1 ENSMUST00000140468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027210 Meis2 ENSMUST00000102538 ENSMUSP00000099597 TRANSLATION protein_coding - CCDS16568.1 1 470.0 0.0 2.94 25.7 226.0 0.0 -4,-5 0.8949 - 11.068 ALTERNATIVE:1 ENSMUSG00000027210 Meis2 ENSMUST00000189640 - NO_TRANSLATION retained_intron ENSMUSG00000027210 Meis2 ENSMUST00000118654 - NO_TRANSLATION retained_intron ENSMUSG00000027210 Meis2 ENSMUST00000134314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027210 Meis2 ENSMUST00000154671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027210 Meis2 ENSMUST00000110907 ENSMUSP00000106532 TRANSLATION protein_coding - CCDS50668.1 1 401.0 0.0 2.94 33.2 226.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000027210 Meis2 ENSMUST00000028639 ENSMUSP00000028639 TRANSLATION protein_coding - CCDS50667.1 1 477.0 0.0 2.94 22.8 226.0 0.0 -4,-5 0.8788 - 10.708 MINOR ENSMUSG00000027210 Meis2 ENSMUST00000151279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027210 Meis2 ENSMUST00000074285 ENSMUSP00000073898 TRANSLATION protein_coding - CCDS50664.1 1 393.0 0.0 2.94 27.0 226.0 0.0 -4,-5 0.9699 - 11.228 ALTERNATIVE:1 ENSMUSG00000027210 Meis2 ENSMUST00000135543 - NO_TRANSLATION retained_intron ENSMUSG00000027210 Meis2 ENSMUST00000138526 - NO_TRANSLATION retained_intron ENSMUSG00000027210 Meis2 ENSMUST00000133990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027210 Meis2 ENSMUST00000110906 ENSMUSP00000106531 TRANSLATION protein_coding - CCDS50665.1 2 400.0 0.0 2.94 27.0 226.0 0.0 -4,-5 0.9864 - 11.228 ALTERNATIVE:1 ENSMUSG00000027210 Meis2 ENSMUST00000110908 ENSMUSP00000106533 TRANSLATION protein_coding - CCDS50666.1 1 394.0 0.0 2.94 33.2 226.0 0.0 -4,-5 0.9755 - 12.0 ALTERNATIVE:1 ENSMUSG00000027210 Meis2 ENSMUST00000150477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027210 Meis2 ENSMUST00000140461 - NO_TRANSLATION retained_intron ENSMUSG00000027210 Meis2 ENSMUST00000149217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027210 Meis2 ENSMUST00000120995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027210 Meis2 ENSMUST00000177493 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075186 Or8k24 ENSMUST00000213998 ENSMUSP00000151037 TRANSLATION protein_coding - CCDS16254.1 5 316.0 0.0 1.0 3.9 167.9 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075186 Or8k24 ENSMUST00000102631 ENSMUSP00000099691 TRANSLATION protein_coding - CCDS16254.1 - 316.0 0.0 1.0 3.9 167.9 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000027238 Frmd5 ENSMUST00000212518 ENSMUSP00000148465 TRANSLATION protein_coding - - 5 256.0 0.0 0.0 0.1 0.0 3.0 -4,0 0.0058 1 0.0 MINOR ENSMUSG00000027238 Frmd5 ENSMUST00000110593 ENSMUSP00000106223 TRANSLATION protein_coding start - 1 509.0 0.0 9.38 0.0 216.0 0.0 -4,-2 0.0061 6 -2.0 MINOR ENSMUSG00000027238 Frmd5 ENSMUST00000110592 ENSMUSP00000106222 TRANSLATION protein_coding - - 5 570.0 0.0 10.08 26.6 238.0 3.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000027238 Frmd5 ENSMUST00000145075 ENSMUSP00000122195 TRANSLATION nonsense_mediated_decay - - 3 120.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000027238 Frmd5 ENSMUST00000131092 ENSMUSP00000118272 TRANSLATION protein_coding start - 3 206.0 0.0 1.08 0.0 49.6 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000027238 Frmd5 ENSMUST00000155570 ENSMUSP00000120176 TRANSLATION protein_coding start - 1 500.0 0.0 9.38 0.0 216.0 0.0 -4,-2 0.0061 6 -2.0 MINOR ENSMUSG00000027238 Frmd5 ENSMUST00000138157 ENSMUSP00000115136 TRANSLATION protein_coding - CCDS16649.1 1 517.0 0.0 10.08 5.0 238.0 0.0 -4,-2 0.533 6 12.624 MINOR ENSMUSG00000027238 Frmd5 ENSMUST00000153932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027238 Frmd5 ENSMUST00000121219 ENSMUSP00000113568 TRANSLATION protein_coding - - 1 481.0 0.0 7.58 8.9 178.4 3.0 -4,-6 0.1885 7 4.662 MINOR ENSMUSG00000027238 Frmd5 ENSMUST00000153704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027238 Frmd5 ENSMUST00000142016 - NO_TRANSLATION retained_intron ENSMUSG00000027238 Frmd5 ENSMUST00000133898 ENSMUSP00000118269 TRANSLATION protein_coding start - 5 440.0 0.0 7.58 0.0 178.4 0.0 -4,-7 0.0024 6 -2.0 MINOR ENSMUSG00000027238 Frmd5 ENSMUST00000128428 ENSMUSP00000116468 TRANSLATION nonsense_mediated_decay - - 1 216.0 0.0 5.33 0.0 111.8 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000032864 Rag2 ENSMUST00000111227 ENSMUSP00000106858 TRANSLATION protein_coding - CCDS16462.1 1 527.0 9.0 1.0 15.5 787.2 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000032864 Rag2 ENSMUST00000044031 ENSMUSP00000038204 TRANSLATION protein_coding - CCDS16462.1 1 527.0 9.0 1.0 15.5 787.2 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000074754 Smim26 ENSMUST00000136628 ENSMUSP00000132193 TRANSLATION protein_coding - CCDS16823.1 1 107.0 0.0 0.0 0.1 0.0 0.0 -2,-7 0.849 1 0.0 PRINCIPAL:1 ENSMUSG00000081836 Or4p19 ENSMUST00000099824 ENSMUSP00000097412 TRANSLATION protein_coding - CCDS16334.1 - 309.0 0.0 1.0 3.2 159.9 4.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000081836 Or4p19 ENSMUST00000217320 ENSMUSP00000150965 TRANSLATION protein_coding - CCDS16334.1 5 309.0 0.0 1.0 3.2 159.9 4.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000081836 Or4p19 ENSMUST00000216121 ENSMUSP00000149838 TRANSLATION protein_coding - CCDS16334.1 3 309.0 0.0 1.0 3.2 159.9 4.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000052922 Bpi ENSMUST00000109499 ENSMUSP00000105125 TRANSLATION protein_coding - - 1 483.0 0.0 12.1 0.1 370.1 0.0 3,-2 0.6885 7 8.0 PRINCIPAL:4 ENSMUSG00000052922 Bpi ENSMUST00000065039 ENSMUSP00000067837 TRANSLATION protein_coding - CCDS16987.1 1 486.0 0.0 12.1 0.1 360.9 0.0 3,-2 0.6452 7 8.0 ALTERNATIVE:2 ENSMUSG00000052922 Bpi ENSMUST00000109500 ENSMUSP00000105126 TRANSLATION protein_coding - - 5 482.0 0.0 12.1 0.1 376.5 0.0 3,-2 0.5974 7 8.0 ALTERNATIVE:2 ENSMUSG00000075115 Or4a67 ENSMUST00000099811 ENSMUSP00000097399 TRANSLATION protein_coding - CCDS16348.1 - 336.0 0.0 1.0 0.0 157.8 5.0 -3,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075115 Or4a67 ENSMUST00000217588 ENSMUSP00000149757 TRANSLATION protein_coding - CCDS16348.1 5 336.0 0.0 1.0 0.0 157.8 5.0 -3,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027006 Dnajc10 ENSMUST00000153093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027006 Dnajc10 ENSMUST00000154912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027006 Dnajc10 ENSMUST00000125000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027006 Dnajc10 ENSMUST00000028392 ENSMUSP00000028392 TRANSLATION protein_coding - CCDS38159.1 1 793.0 7.0 19.0 15.6 370.1 0.0 -4,-7 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000027006 Dnajc10 ENSMUST00000133536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027444 Cstdc1 ENSMUST00000028933 ENSMUSP00000028933 TRANSLATION protein_coding - CCDS16846.1 1 130.0 0.0 2.75 4.4 48.8 0.0 1,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070853 Or12e14 ENSMUST00000121186 ENSMUSP00000150363 TRANSLATION protein_coding - - 5 316.0 0.0 1.0 8.3 176.6 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075155 Or5w1b ENSMUST00000217368 ENSMUSP00000149460 TRANSLATION protein_coding - CCDS16300.1 5 313.0 0.0 1.0 9.2 171.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075155 Or5w1b ENSMUST00000099855 ENSMUSP00000097441 TRANSLATION protein_coding - CCDS16300.1 - 313.0 0.0 1.0 9.2 171.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075119 Or4a27 ENSMUST00000099815 ENSMUSP00000097403 TRANSLATION protein_coding - CCDS16345.1 - 314.0 0.0 1.0 1.1 154.5 5.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075119 Or4a27 ENSMUST00000213118 ENSMUSP00000150290 TRANSLATION protein_coding - CCDS16345.1 5 314.0 0.0 1.0 1.1 154.5 5.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000015787 Abo ENSMUST00000114045 ENSMUSP00000109679 TRANSLATION protein_coding - - 5 334.0 11.0 2.5 0.4 502.5 1.0 -3,-5 0.2852 4 12.0 ALTERNATIVE:2 ENSMUSG00000015787 Abo ENSMUST00000102900 ENSMUSP00000099964 TRANSLATION protein_coding - CCDS15811.1 1 332.0 11.0 2.5 0.3 502.5 1.0 -3,-5 1.0 4 12.0 PRINCIPAL:2 ENSMUSG00000075074 Or4a81 ENSMUST00000111523 ENSMUSP00000107148 TRANSLATION protein_coding - CCDS16392.1 3 314.0 0.0 1.0 3.3 156.9 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075074 Or4a81 ENSMUST00000099764 ENSMUSP00000097352 TRANSLATION protein_coding - CCDS16392.1 - 314.0 0.0 1.0 3.3 156.9 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075074 Or4a81 ENSMUST00000216587 ENSMUSP00000149507 TRANSLATION protein_coding - CCDS16392.1 5 314.0 0.0 1.0 3.3 156.9 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000078901 Gm14440 ENSMUST00000109051 ENSMUSP00000104679 TRANSLATION protein_coding - CCDS84589.1 1 64.0 0.0 1.75 0.4 72.2 0.0 -4,-5 0.1263 - 7.382 ALTERNATIVE:2 ENSMUSG00000078901 Gm14440 ENSMUST00000249365 ENSMUSP00000159722 TRANSLATION protein_coding - - - 79.0 0.0 1.95 0.0 72.2 0.0 -4,-5 0.7389 - 8.0 PRINCIPAL:2 ENSMUSG00000078901 Gm14440 ENSMUST00000098998 ENSMUSP00000096596 TRANSLATION protein_coding - - 5 70.0 0.0 1.75 0.0 72.2 0.0 -4,-5 0.0054 - 7.382 ALTERNATIVE:2 ENSMUSG00000027202 Slc12a1 ENSMUST00000147095 - NO_TRANSLATION retained_intron ENSMUSG00000027202 Slc12a1 ENSMUST00000110495 ENSMUSP00000106121 TRANSLATION protein_coding - CCDS50694.1 5 1090.0 0.0 21.75 3.2 1083.6 9.0 -4,-2 0.8048 6 9.0 ALTERNATIVE:2 ENSMUSG00000027202 Slc12a1 ENSMUST00000028630 ENSMUSP00000028630 TRANSLATION protein_coding - CCDS50693.1 1 1090.0 0.0 21.75 3.2 1090.2 8.0 -4,-2 1.0 6 9.0 PRINCIPAL:4 ENSMUSG00000027202 Slc12a1 ENSMUST00000110494 ENSMUSP00000106120 TRANSLATION protein_coding - - 5 1090.0 0.0 21.75 3.2 1083.2 9.0 -4,-2 0.6113 6 9.0 ALTERNATIVE:2 ENSMUSG00000040687 Madd ENSMUST00000135910 - NO_TRANSLATION retained_intron ENSMUSG00000040687 Madd ENSMUST00000066473 ENSMUSP00000069350 TRANSLATION protein_coding - CCDS50635.1 5 1627.0 0.0 1.449 6.4 182.8 1.0 -4,-7 1.0 32 10.0 PRINCIPAL:4 ENSMUSG00000040687 Madd ENSMUST00000156368 - NO_TRANSLATION retained_intron ENSMUSG00000040687 Madd ENSMUST00000132791 - NO_TRANSLATION retained_intron ENSMUSG00000040687 Madd ENSMUST00000130395 - NO_TRANSLATION retained_intron ENSMUSG00000040687 Madd ENSMUST00000111381 ENSMUSP00000107012 TRANSLATION protein_coding - - 2 1593.0 0.0 1.449 0.0 182.8 1.0 -4,-7 0.2964 27 8.0 MINOR ENSMUSG00000040687 Madd ENSMUST00000111369 ENSMUSP00000107000 TRANSLATION protein_coding - - 5 1475.0 0.0 1.449 2.1 182.8 1.0 -4,-7 0.3744 28 8.408 MINOR ENSMUSG00000040687 Madd ENSMUST00000111371 ENSMUSP00000107002 TRANSLATION protein_coding - - 2 1574.0 0.0 1.449 0.0 182.8 1.0 -4,-7 0.2788 26 8.0 MINOR ENSMUSG00000040687 Madd ENSMUST00000154028 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040687 Madd ENSMUST00000125321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040687 Madd ENSMUST00000099723 ENSMUSP00000097311 TRANSLATION protein_coding - CCDS50638.1 1 1577.0 0.0 1.449 5.7 182.8 1.0 -4,-7 0.9201 32 9.74 ALTERNATIVE:1 ENSMUSG00000040687 Madd ENSMUST00000111376 ENSMUSP00000107007 TRANSLATION protein_coding - - 5 1602.0 0.0 1.449 5.7 182.8 1.0 -4,-7 0.7824 29 9.74 ALTERNATIVE:1 ENSMUSG00000040687 Madd ENSMUST00000077941 ENSMUSP00000077094 TRANSLATION protein_coding - - 2 1632.0 0.0 1.449 0.0 182.8 1.0 -4,-7 0.3571 30 8.0 MINOR ENSMUSG00000040687 Madd ENSMUST00000099725 ENSMUSP00000097313 TRANSLATION protein_coding - CCDS50635.1 5 1627.0 0.0 1.449 6.4 182.8 1.0 -4,-7 1.0 32 10.0 PRINCIPAL:4 ENSMUSG00000040687 Madd ENSMUST00000111375 ENSMUSP00000107006 TRANSLATION protein_coding - - 5 1562.0 0.0 1.449 4.5 182.8 1.0 -4,-7 0.6464 28 9.296 ALTERNATIVE:1 ENSMUSG00000040687 Madd ENSMUST00000153688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040687 Madd ENSMUST00000130591 - NO_TRANSLATION retained_intron ENSMUSG00000040687 Madd ENSMUST00000111373 ENSMUSP00000107004 TRANSLATION protein_coding - - 5 1541.0 0.0 1.449 2.4 182.8 1.0 -4,-7 0.3591 28 8.518 MINOR ENSMUSG00000040687 Madd ENSMUST00000150461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040687 Madd ENSMUST00000125227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040687 Madd ENSMUST00000146097 - NO_TRANSLATION retained_intron ENSMUSG00000040687 Madd ENSMUST00000150517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040687 Madd ENSMUST00000075269 ENSMUSP00000074746 TRANSLATION protein_coding - - 2 1554.0 0.0 1.449 0.0 182.8 1.0 -4,-7 0.2754 26 8.0 MINOR ENSMUSG00000040687 Madd ENSMUST00000066420 ENSMUSP00000067210 TRANSLATION protein_coding - - 5 1115.0 0.0 1.449 0.0 182.8 1.0 -4,-7 0.2302 17 8.0 MINOR ENSMUSG00000040687 Madd ENSMUST00000135715 - NO_TRANSLATION retained_intron ENSMUSG00000040687 Madd ENSMUST00000140600 ENSMUSP00000117657 TRANSLATION protein_coding start/stop - 5 263.0 0.0 0.585 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000040687 Madd ENSMUST00000111370 ENSMUSP00000107001 TRANSLATION protein_coding - CCDS38178.1 1 1558.0 0.0 1.449 4.6 182.8 1.0 -4,-7 0.8063 32 9.334 ALTERNATIVE:1 ENSMUSG00000040687 Madd ENSMUST00000111372 ENSMUSP00000107003 TRANSLATION protein_coding - - 2 1573.0 0.0 1.449 0.0 182.8 1.0 -4,-7 0.2789 27 8.0 MINOR ENSMUSG00000046110 Serinc4 ENSMUST00000140752 ENSMUSP00000116676 TRANSLATION nonsense_mediated_decay start - 5 109.0 0.0 0.6 0.0 40.5 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000046110 Serinc4 ENSMUST00000110613 ENSMUSP00000106243 TRANSLATION protein_coding - - 1 432.0 0.0 2.5 0.0 217.4 11.0 -4,-7 0.0536 - 6.0 MINOR ENSMUSG00000046110 Serinc4 ENSMUST00000126678 - NO_TRANSLATION retained_intron ENSMUSG00000046110 Serinc4 ENSMUST00000127435 ENSMUSP00000119373 TRANSLATION nonsense_mediated_decay start - 5 236.0 0.0 2.5 0.0 194.8 9.0 -4,-6 0.0494 - -2.0 MINOR ENSMUSG00000046110 Serinc4 ENSMUST00000140135 ENSMUSP00000117054 TRANSLATION nonsense_mediated_decay start - 5 109.0 0.0 0.6 0.0 40.5 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000046110 Serinc4 ENSMUST00000056312 ENSMUSP00000051261 TRANSLATION protein_coding - CCDS16646.1 1 492.0 0.0 0.95 0.1 406.2 13.0 -4,-7 1.0 - 8.28 PRINCIPAL:1 ENSMUSG00000108976 Gm29797 ENSMUST00000207856 ENSMUSP00000146742 TRANSLATION protein_coding - - 5 188.0 0.0 0.0 0.4 0.0 0.0 3,-2 0.6279 - 0.0 PRINCIPAL:1 ENSMUSG00000068580 Zfyve19 ENSMUST00000090174 ENSMUSP00000087636 TRANSLATION protein_coding - CCDS16595.1 1 389.0 18.0 3.75 1.4 36.2 0.0 -4,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000068580 Zfyve19 ENSMUST00000123776 - NO_TRANSLATION retained_intron ENSMUSG00000068580 Zfyve19 ENSMUST00000147584 - NO_TRANSLATION retained_intron ENSMUSG00000068580 Zfyve19 ENSMUST00000141514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068580 Zfyve19 ENSMUST00000123323 - NO_TRANSLATION retained_intron ENSMUSG00000068580 Zfyve19 ENSMUST00000154185 - NO_TRANSLATION retained_intron ENSMUSG00000068580 Zfyve19 ENSMUST00000142644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068580 Zfyve19 ENSMUST00000153349 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068580 Zfyve19 ENSMUST00000149036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068580 Zfyve19 ENSMUST00000154057 - NO_TRANSLATION retained_intron ENSMUSG00000068580 Zfyve19 ENSMUST00000102519 ENSMUSP00000099577 TRANSLATION protein_coding - CCDS50672.1 1 330.0 9.0 2.0 0.0 36.2 0.0 -4,-5 0.0813 4 8.502 MINOR ENSMUSG00000027079 Clp1 ENSMUST00000138231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027079 Clp1 ENSMUST00000028475 ENSMUSP00000028475 TRANSLATION protein_coding - CCDS16191.1 1 425.0 7.0 2.0 22.0 479.3 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000027079 Clp1 ENSMUST00000165219 ENSMUSP00000129300 TRANSLATION nonsense_mediated_decay - CCDS16191.1 1 425.0 7.0 2.0 22.0 479.3 0.0 -4,-5 1.0 5 -2.0 MINOR ENSMUSG00000026874 Hc ENSMUST00000156412 ENSMUSP00000144345 TRANSLATION protein_coding start/stop - 5 193.0 0.0 4.5 0.0 94.7 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000026874 Hc ENSMUST00000125549 - NO_TRANSLATION retained_intron ENSMUSG00000026874 Hc ENSMUST00000028233 ENSMUSP00000028233 TRANSLATION protein_coding - - 1 1680.0 0.0 37.32 5.1 656.7 0.0 4,-1 1.0 46 14.0 PRINCIPAL:1 ENSMUSG00000026874 Hc ENSMUST00000156049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026874 Hc ENSMUST00000151628 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075159 Or5aq1 ENSMUST00000152758 ENSMUSP00000149495 TRANSLATION protein_coding - CCDS16282.1 2 312.0 0.0 1.0 6.1 179.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075159 Or5aq1 ENSMUST00000099861 ENSMUSP00000097447 TRANSLATION protein_coding - CCDS16282.1 - 312.0 0.0 1.0 6.1 179.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000017652 Cd40 ENSMUST00000140951 ENSMUSP00000122981 TRANSLATION protein_coding stop - 3 121.0 0.0 1.783 0.0 0.0 0.0 3,-2 0.0041 2 -2.0 MINOR ENSMUSG00000017652 Cd40 ENSMUST00000017799 ENSMUSP00000017799 TRANSLATION protein_coding - CCDS17069.1 1 289.0 0.0 6.213 0.4 33.1 1.0 3,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000017652 Cd40 ENSMUST00000081310 ENSMUSP00000080059 TRANSLATION protein_coding - CCDS17071.1 1 203.0 0.0 4.131 1.4 33.1 0.0 3,-2 0.263 3 8.836 MINOR ENSMUSG00000017652 Cd40 ENSMUST00000073707 ENSMUSP00000073386 TRANSLATION protein_coding - CCDS17070.1 1 260.0 0.0 5.463 0.0 33.1 0.0 3,-2 0.2093 5 10.5 MINOR ENSMUSG00000017652 Cd40 ENSMUST00000153105 - NO_TRANSLATION retained_intron ENSMUSG00000017652 Cd40 ENSMUST00000154443 ENSMUSP00000138707 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.033 0.0 0.0 0.0 2,-2 0.0 - -2.0 MINOR ENSMUSG00000017652 Cd40 ENSMUST00000184221 ENSMUSP00000139193 TRANSLATION nonsense_mediated_decay - - 1 234.0 0.0 5.283 0.0 33.1 1.0 3,-2 0.0795 4 -2.0 MINOR ENSMUSG00000027229 Terb2 ENSMUST00000149861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027229 Terb2 ENSMUST00000028661 ENSMUSP00000028661 TRANSLATION protein_coding - CCDS50688.1 1 218.0 0.0 4.25 4.9 290.6 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000018459 Slc13a3 ENSMUST00000143136 - NO_TRANSLATION retained_intron ENSMUSG00000018459 Slc13a3 ENSMUST00000145513 - NO_TRANSLATION retained_intron ENSMUSG00000018459 Slc13a3 ENSMUST00000109279 ENSMUSP00000104902 TRANSLATION protein_coding - - 1 558.0 0.0 7.085 1.1 329.7 9.0 4,-1 0.1105 3 9.512 MINOR ENSMUSG00000018459 Slc13a3 ENSMUST00000029208 ENSMUSP00000029208 TRANSLATION protein_coding - CCDS17081.1 1 600.0 0.0 7.415 5.6 360.9 10.0 4,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000018459 Slc13a3 ENSMUST00000147107 - NO_TRANSLATION retained_intron ENSMUSG00000005087 Cd44 ENSMUST00000111191 ENSMUSP00000106822 TRANSLATION protein_coding - CCDS50649.1 1 498.0 0.0 3.35 0.1 69.6 0.0 4,-1 0.4209 6 8.0 ALTERNATIVE:2 ENSMUSG00000005087 Cd44 ENSMUST00000060516 ENSMUSP00000062330 TRANSLATION protein_coding - CCDS16470.1 1 580.0 0.0 3.35 0.1 69.6 0.0 4,-1 0.4424 6 8.0 ALTERNATIVE:2 ENSMUSG00000005087 Cd44 ENSMUST00000111194 ENSMUSP00000106825 TRANSLATION protein_coding - - 5 577.0 0.0 3.35 0.0 69.6 0.0 4,-1 0.1416 6 8.0 ALTERNATIVE:2 ENSMUSG00000005087 Cd44 ENSMUST00000111190 ENSMUSP00000106821 TRANSLATION protein_coding - CCDS50648.1 1 464.0 0.0 3.35 0.0 69.6 0.0 4,-1 0.3237 6 8.0 ALTERNATIVE:2 ENSMUSG00000005087 Cd44 ENSMUST00000124624 - NO_TRANSLATION retained_intron ENSMUSG00000005087 Cd44 ENSMUST00000099673 ENSMUSP00000097265 TRANSLATION protein_coding - CCDS16471.1 1 365.0 0.0 3.35 1.7 69.6 0.0 4,-1 1.0 6 9.0 PRINCIPAL:2 ENSMUSG00000005087 Cd44 ENSMUST00000111198 ENSMUSP00000106829 TRANSLATION protein_coding - CCDS50650.1 1 657.0 0.0 3.35 0.1 69.6 0.0 4,-1 0.4576 6 8.0 ALTERNATIVE:2 ENSMUSG00000005087 Cd44 ENSMUST00000111192 ENSMUSP00000106823 TRANSLATION protein_coding - - 5 434.0 0.0 3.35 0.1 69.6 0.0 4,-1 0.2165 6 8.0 ALTERNATIVE:2 ENSMUSG00000005087 Cd44 ENSMUST00000005218 ENSMUSP00000005218 TRANSLATION protein_coding - CCDS16472.1 1 780.0 0.0 3.35 0.1 69.6 0.0 4,-1 0.5222 6 8.0 ALTERNATIVE:2 ENSMUSG00000035392 Dennd1a ENSMUST00000128492 - NO_TRANSLATION retained_intron ENSMUSG00000035392 Dennd1a ENSMUST00000126889 - NO_TRANSLATION retained_intron ENSMUSG00000035392 Dennd1a ENSMUST00000150896 ENSMUSP00000116723 TRANSLATION nonsense_mediated_decay - - 3 103.0 0.0 3.24 0.0 47.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035392 Dennd1a ENSMUST00000136116 - NO_TRANSLATION retained_intron ENSMUSG00000035392 Dennd1a ENSMUST00000130472 ENSMUSP00000119892 TRANSLATION protein_coding stop - 2 105.0 0.0 3.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035392 Dennd1a ENSMUST00000136460 ENSMUSP00000115527 TRANSLATION protein_coding start/stop - 5 277.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 2 -2.0 MINOR ENSMUSG00000035392 Dennd1a ENSMUST00000205218 - NO_TRANSLATION retained_intron ENSMUSG00000035392 Dennd1a ENSMUST00000143095 ENSMUSP00000116018 TRANSLATION nonsense_mediated_decay - - 3 47.0 0.0 1.58 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035392 Dennd1a ENSMUST00000102787 ENSMUSP00000099848 TRANSLATION protein_coding - CCDS16007.1 1 1016.0 0.0 11.99 3.8 250.1 0.0 -4,-5 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000035392 Dennd1a ENSMUST00000142813 ENSMUSP00000116396 TRANSLATION nonsense_mediated_decay - - 3 80.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035392 Dennd1a ENSMUST00000140552 ENSMUSP00000120998 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040321 Zfp770 ENSMUST00000123562 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040321 Zfp770 ENSMUST00000050668 ENSMUSP00000052194 TRANSLATION protein_coding - CCDS16566.1 1 705.0 27.0 0.2 0.0 156.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033080 Vsx1 ENSMUST00000046095 ENSMUSP00000039088 TRANSLATION protein_coding - CCDS16860.1 1 363.0 0.0 1.8 0.0 81.5 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025782 Taf3 ENSMUST00000114906 ENSMUSP00000110556 TRANSLATION protein_coding - - 2 51.0 6.0 1.5 0.0 38.0 0.0 -4,-5 0.0 - 7.074 MINOR ENSMUSG00000025782 Taf3 ENSMUST00000026888 ENSMUSP00000026888 TRANSLATION protein_coding - CCDS15675.1 1 932.0 8.0 4.05 0.7 110.1 0.0 -4,-7 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000025782 Taf3 ENSMUST00000114907 ENSMUSP00000110557 TRANSLATION protein_coding - - 1 108.0 8.0 2.25 0.0 44.8 0.0 -4,-7 0.0008 - 10.482 MINOR ENSMUSG00000025782 Taf3 ENSMUST00000114909 ENSMUSP00000110559 TRANSLATION protein_coding - - 1 779.0 8.0 2.25 0.0 44.8 0.0 -4,-5 0.0112 6 10.482 MINOR ENSMUSG00000025782 Taf3 ENSMUST00000129720 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051769 Wfdc15a ENSMUST00000063251 ENSMUSP00000070718 TRANSLATION protein_coding - CCDS38319.1 1 80.0 0.0 1.75 2.2 38.4 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000027406 Idh3b ENSMUST00000028892 ENSMUSP00000028892 TRANSLATION protein_coding - CCDS16738.1 1 384.0 14.0 9.25 16.7 257.1 0.0 -1,2 1.0 24 18.0 PRINCIPAL:1 ENSMUSG00000027406 Idh3b ENSMUST00000184538 ENSMUSP00000139331 TRANSLATION nonsense_mediated_decay start - 3 80.0 0.0 2.5 0.0 50.1 0.0 -4,-1 0.0 7 -2.0 MINOR ENSMUSG00000027406 Idh3b ENSMUST00000149843 - NO_TRANSLATION retained_intron ENSMUSG00000027406 Idh3b ENSMUST00000124868 - NO_TRANSLATION retained_intron ENSMUSG00000027406 Idh3b ENSMUST00000239288 ENSMUSP00000159209 TRANSLATION protein_coding - - - 380.0 14.0 9.25 12.2 260.1 0.0 -1,2 0.8256 21 16.852 MINOR ENSMUSG00000076441 Ass1 ENSMUST00000126474 - NO_TRANSLATION retained_intron ENSMUSG00000076441 Ass1 ENSMUST00000130195 - NO_TRANSLATION retained_intron ENSMUSG00000076441 Ass1 ENSMUST00000102840 ENSMUSP00000099904 TRANSLATION protein_coding - CCDS15898.1 1 412.0 29.0 10.83 25.9 585.2 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000076441 Ass1 ENSMUST00000192802 - NO_TRANSLATION retained_intron ENSMUSG00000111567 Or4a78 ENSMUST00000214750 ENSMUSP00000150028 TRANSLATION protein_coding - CCDS16390.1 - 318.0 0.0 1.0 1.5 154.7 4.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000111567 Or4a78 ENSMUST00000214304 ENSMUSP00000149873 TRANSLATION protein_coding - CCDS16390.1 5 318.0 0.0 1.0 1.5 154.7 4.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000111567 Or4a78 ENSMUST00000214639 ENSMUSP00000149580 TRANSLATION protein_coding - CCDS16390.1 5 318.0 0.0 1.0 1.5 154.7 4.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000067578 Cbln4 ENSMUST00000087950 ENSMUSP00000085263 TRANSLATION protein_coding - CCDS17126.1 1 198.0 0.0 2.6 13.2 85.8 0.0 4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000055838 Or1q1 ENSMUST00000213218 ENSMUSP00000149727 TRANSLATION protein_coding - CCDS15990.1 5 308.0 0.0 1.0 7.3 179.2 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000055838 Or1q1 ENSMUST00000069578 ENSMUSP00000066272 TRANSLATION protein_coding - CCDS15990.1 - 308.0 0.0 1.0 7.3 179.2 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000078877 Gm14295 ENSMUST00000132883 ENSMUSP00000119262 TRANSLATION protein_coding - - 5 834.0 106.0 2.0 0.0 645.0 0.0 -4,-5 0.8777 - 18.0 PRINCIPAL:1 ENSMUSG00000078877 Gm14295 ENSMUST00000179435 ENSMUSP00000136320 TRANSLATION protein_coding start - 5 63.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000078877 Gm14295 ENSMUST00000118012 ENSMUSP00000113133 TRANSLATION protein_coding - CCDS57201.1 1 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0301 - 5.25 MINOR ENSMUSG00000039205 Ciz1 ENSMUST00000125818 ENSMUSP00000117937 TRANSLATION protein_coding start - 3 235.0 6.0 0.0 0.0 30.1 0.0 -4,-7 0.0579 2 -2.0 MINOR ENSMUSG00000039205 Ciz1 ENSMUST00000136079 ENSMUSP00000116812 TRANSLATION protein_coding stop - 5 226.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0015 1 -2.0 MINOR ENSMUSG00000039205 Ciz1 ENSMUST00000151806 ENSMUSP00000119429 TRANSLATION protein_coding start/stop - 5 262.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0015 3 -2.0 MINOR ENSMUSG00000039205 Ciz1 ENSMUST00000132028 ENSMUSP00000120295 TRANSLATION protein_coding stop - 2 194.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000039205 Ciz1 ENSMUST00000134141 - NO_TRANSLATION retained_intron ENSMUSG00000039205 Ciz1 ENSMUST00000147338 - NO_TRANSLATION retained_intron ENSMUSG00000039205 Ciz1 ENSMUST00000125482 ENSMUSP00000120019 TRANSLATION protein_coding start/stop - 5 288.0 6.0 0.0 0.0 0.0 0.0 -4,-7 0.0028 8 -2.0 MINOR ENSMUSG00000039205 Ciz1 ENSMUST00000113331 ENSMUSP00000108957 TRANSLATION protein_coding - - 5 821.0 10.0 0.0 0.0 30.1 0.0 -4,-6 0.192 15 8.0 ALTERNATIVE:2 ENSMUSG00000039205 Ciz1 ENSMUST00000132290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039205 Ciz1 ENSMUST00000113334 ENSMUSP00000108960 TRANSLATION protein_coding - CCDS15911.1 5 845.0 10.0 0.0 0.0 30.1 0.0 -4,-7 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000039205 Ciz1 ENSMUST00000149184 - NO_TRANSLATION retained_intron ENSMUSG00000039205 Ciz1 ENSMUST00000048964 ENSMUSP00000048428 TRANSLATION protein_coding - CCDS15911.1 1 845.0 10.0 0.0 0.0 30.1 0.0 -4,-7 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000039205 Ciz1 ENSMUST00000192055 - NO_TRANSLATION retained_intron ENSMUSG00000039205 Ciz1 ENSMUST00000131152 ENSMUSP00000141211 TRANSLATION nonsense_mediated_decay - - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000039205 Ciz1 ENSMUST00000192758 - NO_TRANSLATION retained_intron ENSMUSG00000039205 Ciz1 ENSMUST00000145957 - NO_TRANSLATION retained_intron ENSMUSG00000039205 Ciz1 ENSMUST00000113332 ENSMUSP00000108958 TRANSLATION protein_coding - CCDS57166.1 1 791.0 10.0 0.0 0.0 30.1 0.0 -4,-7 0.2819 12 8.0 ALTERNATIVE:2 ENSMUSG00000039205 Ciz1 ENSMUST00000137220 - NO_TRANSLATION retained_intron ENSMUSG00000039205 Ciz1 ENSMUST00000139637 ENSMUSP00000122469 TRANSLATION protein_coding start/stop - 3 245.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0013 6 -2.0 MINOR ENSMUSG00000039205 Ciz1 ENSMUST00000136325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039205 Ciz1 ENSMUST00000125769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039205 Ciz1 ENSMUST00000113338 ENSMUSP00000108964 TRANSLATION protein_coding - CCDS15911.1 5 845.0 10.0 0.0 0.0 30.1 0.0 -4,-7 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000101174 Hoxd4 ENSMUST00000144040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101174 Hoxd4 ENSMUST00000047904 ENSMUSP00000047949 TRANSLATION protein_coding - CCDS16145.1 5 250.0 0.0 1.0 8.9 76.7 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000101174 Hoxd4 ENSMUST00000111980 ENSMUSP00000107611 TRANSLATION protein_coding - CCDS16145.1 1 250.0 0.0 1.0 8.9 76.7 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000017009 Sdc4 ENSMUST00000142909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017009 Sdc4 ENSMUST00000017153 ENSMUSP00000017153 TRANSLATION protein_coding - CCDS17036.1 1 198.0 0.0 1.0 0.1 88.8 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000027611 Procr ENSMUST00000155095 - NO_TRANSLATION retained_intron ENSMUSG00000027611 Procr ENSMUST00000132608 ENSMUSP00000114567 TRANSLATION protein_coding stop - 3 138.0 0.0 1.75 0.0 41.7 0.0 3,-2 0.0014 1 -2.0 MINOR ENSMUSG00000027611 Procr ENSMUST00000029140 ENSMUSP00000029140 TRANSLATION protein_coding - CCDS16954.1 1 242.0 0.0 2.75 0.1 77.9 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000027611 Procr ENSMUST00000143493 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075379 Or12k5 ENSMUST00000216437 ENSMUSP00000150781 TRANSLATION protein_coding - CCDS15991.1 5 330.0 0.0 1.0 0.1 165.3 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075379 Or12k5 ENSMUST00000100146 ENSMUSP00000097724 TRANSLATION protein_coding - CCDS15991.1 - 330.0 0.0 1.0 0.1 165.3 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026980 Ly75 ENSMUST00000112533 ENSMUSP00000108152 TRANSLATION protein_coding - - 5 1723.0 9.0 26.892 6.1 496.6 1.0 2,-2 0.8014 25 15.658 ALTERNATIVE:1 ENSMUSG00000026980 Ly75 ENSMUST00000028362 ENSMUSP00000028362 TRANSLATION protein_coding - CCDS38126.1 1 1723.0 9.0 27.062 6.1 496.6 1.0 2,-2 1.0 26 16.0 PRINCIPAL:3 ENSMUSG00000027030 Stk39 ENSMUST00000149581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027030 Stk39 ENSMUST00000102715 ENSMUSP00000099776 TRANSLATION protein_coding - CCDS16084.1 1 556.0 19.0 10.555 0.0 288.5 0.0 -3,-4 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000027030 Stk39 ENSMUST00000134442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027030 Stk39 ENSMUST00000123781 - NO_TRANSLATION retained_intron ENSMUSG00000027030 Stk39 ENSMUST00000130380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027030 Stk39 ENSMUST00000139407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027030 Stk39 ENSMUST00000144457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027030 Stk39 ENSMUST00000126663 - NO_TRANSLATION retained_intron ENSMUSG00000026856 Dolpp1 ENSMUST00000151018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026856 Dolpp1 ENSMUST00000152303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026856 Dolpp1 ENSMUST00000137248 ENSMUSP00000116276 TRANSLATION nonsense_mediated_decay start - 5 91.0 0.0 1.0 0.0 0.0 4.0 -4,-7 0.0038 - -2.0 MINOR ENSMUSG00000026856 Dolpp1 ENSMUST00000123202 ENSMUSP00000119478 TRANSLATION protein_coding - CCDS71022.1 1 140.0 3.0 4.08 1.1 47.8 4.0 -2,-6 0.0224 1 9.456 MINOR ENSMUSG00000026856 Dolpp1 ENSMUST00000155196 ENSMUSP00000115602 TRANSLATION nonsense_mediated_decay start - 3 89.0 0.0 1.0 0.0 0.0 4.0 -4,-7 0.0038 - -2.0 MINOR ENSMUSG00000026856 Dolpp1 ENSMUST00000156704 - NO_TRANSLATION retained_intron ENSMUSG00000026856 Dolpp1 ENSMUST00000113612 ENSMUSP00000109242 TRANSLATION protein_coding - CCDS79768.1 3 195.0 1.0 5.16 6.6 38.1 7.0 -4,-6 0.1431 - 9.313 MINOR ENSMUSG00000026856 Dolpp1 ENSMUST00000133991 - NO_TRANSLATION retained_intron ENSMUSG00000026856 Dolpp1 ENSMUST00000156059 - NO_TRANSLATION retained_intron ENSMUSG00000026856 Dolpp1 ENSMUST00000156984 - NO_TRANSLATION retained_intron ENSMUSG00000026856 Dolpp1 ENSMUST00000028209 ENSMUSP00000028209 TRANSLATION protein_coding - CCDS15881.1 1 238.0 3.0 6.16 36.0 62.3 8.0 -4,-6 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000075377 Or1b1 ENSMUST00000100144 ENSMUSP00000097722 TRANSLATION protein_coding - CCDS15994.1 - 317.0 0.0 0.8 8.1 168.6 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075377 Or1b1 ENSMUST00000215927 ENSMUSP00000150819 TRANSLATION protein_coding - CCDS15994.1 3 317.0 0.0 0.8 8.1 168.6 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075377 Or1b1 ENSMUST00000213817 ENSMUSP00000150852 TRANSLATION protein_coding - CCDS15994.1 5 317.0 0.0 0.8 8.1 168.6 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053746 Ptrh1 ENSMUST00000138214 - NO_TRANSLATION retained_intron ENSMUSG00000053746 Ptrh1 ENSMUST00000192262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053746 Ptrh1 ENSMUST00000066352 ENSMUSP00000068850 TRANSLATION protein_coding - CCDS15931.1 1 204.0 8.0 3.65 0.0 128.3 0.0 -4,0 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000017929 B4galt5 ENSMUST00000155623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017929 B4galt5 ENSMUST00000109221 ENSMUSP00000104844 TRANSLATION protein_coding - CCDS17098.1 1 388.0 3.0 5.0 2.7 282.7 0.0 -1,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000017929 B4galt5 ENSMUST00000149698 ENSMUSP00000118229 TRANSLATION protein_coding start - 3 96.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000017929 B4galt5 ENSMUST00000133557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044364 Tmem74b ENSMUST00000109872 ENSMUSP00000105498 TRANSLATION protein_coding - CCDS50748.1 1 232.0 0.0 0.0 9.0 0.0 2.0 -4,-7 1.0 3 3.0 PRINCIPAL:1 ENSMUSG00000044364 Tmem74b ENSMUST00000060196 ENSMUSP00000060017 TRANSLATION protein_coding - CCDS50748.1 1 232.0 0.0 0.0 9.0 0.0 2.0 -4,-7 1.0 3 3.0 PRINCIPAL:1 ENSMUSG00000074575 Kcng1 ENSMUST00000099069 ENSMUSP00000096668 TRANSLATION protein_coding - CCDS38344.1 1 514.0 0.0 0.46 19.7 228.4 3.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074575 Kcng1 ENSMUST00000109191 ENSMUSP00000104815 TRANSLATION protein_coding - CCDS38344.1 5 514.0 0.0 0.46 19.7 228.4 3.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074575 Kcng1 ENSMUST00000131749 ENSMUSP00000120939 TRANSLATION protein_coding stop - 2 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000109946 Brd3os ENSMUST00000209765 ENSMUSP00000147455 TRANSLATION protein_coding - - - 84.0 0.0 0.0 13.7 0.0 0.0 -4,-7 1.0 1 4.0 PRINCIPAL:1 ENSMUSG00000109946 Brd3os ENSMUST00000209262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006418 Rnf114 ENSMUST00000078050 ENSMUSP00000077197 TRANSLATION protein_coding - CCDS17101.1 1 229.0 15.0 4.1325 14.6 99.2 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000006418 Rnf114 ENSMUST00000127939 ENSMUSP00000138430 TRANSLATION nonsense_mediated_decay - - 1 57.0 4.0 0.6 0.0 26.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006418 Rnf114 ENSMUST00000109214 ENSMUSP00000104837 TRANSLATION protein_coding - CCDS17101.1 1 229.0 15.0 4.1325 14.6 99.2 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000078998 Bpifa6 ENSMUST00000109753 ENSMUSP00000105375 TRANSLATION protein_coding - CCDS50760.1 1 367.0 0.0 3.1 0.0 29.8 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000095315 Zfp1001 ENSMUST00000238230 ENSMUSP00000158750 TRANSLATION protein_coding - - - 409.0 35.0 1.4 0.0 261.8 0.0 -4,-5 0.8184 - 18.0 PRINCIPAL:1 ENSMUSG00000074793 Hspa12b ENSMUST00000100763 ENSMUSP00000098326 TRANSLATION protein_coding - - 2 107.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0115 2 0.0 MINOR ENSMUSG00000074793 Hspa12b ENSMUST00000127862 ENSMUSP00000138109 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0133 - -2.0 MINOR ENSMUSG00000074793 Hspa12b ENSMUST00000099349 ENSMUSP00000096950 TRANSLATION protein_coding - CCDS16755.1 1 685.0 22.0 0.0 14.9 0.0 0.0 -4,-5 1.0 26 10.0 PRINCIPAL:1 ENSMUSG00000074947 Or4f59 ENSMUST00000099600 ENSMUSP00000097195 TRANSLATION protein_coding - CCDS16542.1 - 317.0 0.0 1.0 0.4 147.6 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074947 Or4f59 ENSMUST00000215531 ENSMUSP00000149430 TRANSLATION protein_coding - CCDS16542.1 5 317.0 0.0 1.0 0.4 147.6 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074947 Or4f59 ENSMUST00000213582 ENSMUSP00000148920 TRANSLATION protein_coding - CCDS16542.1 5 317.0 0.0 1.0 0.4 147.6 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074947 Or4f59 ENSMUST00000213961 ENSMUSP00000150415 TRANSLATION protein_coding - CCDS16542.1 5 317.0 0.0 1.0 0.4 147.6 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026867 Gapvd1 ENSMUST00000113111 ENSMUSP00000108735 TRANSLATION protein_coding start - 5 896.0 0.0 2.47 0.0 100.0 0.0 -4,-5 0.0069 19 -2.0 MINOR ENSMUSG00000026867 Gapvd1 ENSMUST00000138203 ENSMUSP00000127268 TRANSLATION nonsense_mediated_decay start - 3 62.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026867 Gapvd1 ENSMUST00000028224 ENSMUSP00000028224 TRANSLATION protein_coding - CCDS15949.1 1 1437.0 0.0 3.334 10.3 220.6 0.0 -4,-5 1.0 35 10.583 PRINCIPAL:4 ENSMUSG00000026867 Gapvd1 ENSMUST00000169207 - NO_TRANSLATION retained_intron ENSMUSG00000026867 Gapvd1 ENSMUST00000156098 - NO_TRANSLATION retained_intron ENSMUSG00000026867 Gapvd1 ENSMUST00000137528 ENSMUSP00000120138 TRANSLATION protein_coding start/stop - 5 835.0 0.0 0.864 0.0 120.6 0.0 -4,-5 0.0098 17 -2.0 MINOR ENSMUSG00000026867 Gapvd1 ENSMUST00000113103 ENSMUSP00000108727 TRANSLATION protein_coding start/stop - 1 828.0 0.0 0.357 0.0 102.2 0.0 -1,-4 0.0082 16 -2.0 MINOR ENSMUSG00000026867 Gapvd1 ENSMUST00000201772 - NO_TRANSLATION retained_intron ENSMUSG00000026867 Gapvd1 ENSMUST00000150859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026867 Gapvd1 ENSMUST00000113099 ENSMUSP00000108723 TRANSLATION protein_coding - - 5 1458.0 0.0 3.334 11.8 220.6 0.0 -4,-5 0.9083 35 11.0 ALTERNATIVE:1 ENSMUSG00000026867 Gapvd1 ENSMUST00000102800 ENSMUSP00000099864 TRANSLATION protein_coding - CCDS15949.1 1 1437.0 0.0 3.334 10.3 220.6 0.0 -4,-5 1.0 35 10.583 PRINCIPAL:4 ENSMUSG00000026867 Gapvd1 ENSMUST00000113101 ENSMUSP00000108725 TRANSLATION protein_coding start - 5 548.0 0.0 2.47 0.0 100.0 0.0 -4,-1 0.0 15 -2.0 MINOR ENSMUSG00000026867 Gapvd1 ENSMUST00000128855 ENSMUSP00000129138 TRANSLATION nonsense_mediated_decay start - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026867 Gapvd1 ENSMUST00000167251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026867 Gapvd1 ENSMUST00000142436 ENSMUSP00000126225 TRANSLATION protein_coding stop - 3 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000037740 Mrps26 ENSMUST00000145614 ENSMUSP00000123324 TRANSLATION protein_coding - CCDS16744.1 1 200.0 0.0 4.0 0.4 186.7 0.0 -4,0 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000037740 Mrps26 ENSMUST00000046149 - NO_TRANSLATION retained_intron ENSMUSG00000019188 H13 ENSMUST00000079247 ENSMUSP00000078236 TRANSLATION protein_coding stop - 5 347.0 0.0 7.45 0.0 256.8 11.0 -4,-5 0.0036 8 -2.0 MINOR ENSMUSG00000019188 H13 ENSMUST00000109825 ENSMUSP00000105450 TRANSLATION protein_coding - CCDS50753.1 1 224.0 0.0 2.95 0.0 68.9 6.0 -4,-5 0.0119 3 0.0 MINOR ENSMUSG00000019188 H13 ENSMUST00000148156 - NO_TRANSLATION retained_intron ENSMUSG00000019188 H13 ENSMUST00000129439 - NO_TRANSLATION retained_intron ENSMUSG00000019188 H13 ENSMUST00000125366 ENSMUSP00000120068 TRANSLATION protein_coding - CCDS16896.1 1 378.0 0.0 8.45 8.0 346.8 12.0 -4,-5 1.0 6 11.0 ALTERNATIVE:1 ENSMUSG00000019188 H13 ENSMUST00000089059 ENSMUSP00000086460 TRANSLATION protein_coding - CCDS50752.1 1 394.0 0.0 8.45 7.0 345.3 12.0 -4,-5 0.9427 8 10.571 PRINCIPAL:3 ENSMUSG00000044320 1700001O22Rik ENSMUST00000136883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000130396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000138959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000131315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000139968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000133380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000126898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000140168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000129484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000050003 ENSMUSP00000058055 TRANSLATION protein_coding - CCDS15885.1 1 375.0 0.0 0.0 0.4 60.9 0.0 -4,-6 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000044320 1700001O22Rik ENSMUST00000135556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000131937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044320 1700001O22Rik ENSMUST00000150205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076434 Wfdc3 ENSMUST00000103096 ENSMUSP00000099385 TRANSLATION protein_coding - CCDS17053.1 1 130.0 0.0 2.8 0.0 69.3 0.0 3,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000076434 Wfdc3 ENSMUST00000130227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076434 Wfdc3 ENSMUST00000109328 ENSMUSP00000104951 TRANSLATION protein_coding - - 1 48.0 0.0 1.0 0.0 21.4 0.0 -4,-5 0.0 2 3.996 MINOR ENSMUSG00000027243 Harbi1 ENSMUST00000128140 ENSMUSP00000117640 TRANSLATION protein_coding stop - 2 44.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000027243 Harbi1 ENSMUST00000140183 ENSMUSP00000116256 TRANSLATION protein_coding stop - 2 176.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000027243 Harbi1 ENSMUST00000090608 ENSMUSP00000088098 TRANSLATION protein_coding - CCDS50642.1 1 349.0 0.0 0.0 35.7 122.6 0.0 -4,-7 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000027243 Harbi1 ENSMUST00000111322 ENSMUSP00000106954 TRANSLATION protein_coding - - 1 244.0 0.0 0.0 0.0 56.8 0.0 -4,-7 0.0001 1 2.052 MINOR ENSMUSG00000027243 Harbi1 ENSMUST00000142692 ENSMUSP00000121420 TRANSLATION protein_coding - - 1 246.0 0.0 0.0 0.0 56.8 0.0 -4,-7 0.0001 1 2.052 MINOR ENSMUSG00000075179 Or8k32 ENSMUST00000111582 ENSMUSP00000107208 TRANSLATION protein_coding - - 3 313.0 0.0 1.0 12.5 164.0 5.0 -4,-7 0.8983 - 11.0 ALTERNATIVE:1 ENSMUSG00000075179 Or8k32 ENSMUST00000099882 ENSMUSP00000097467 TRANSLATION protein_coding - CCDS16260.1 - 315.0 0.0 1.0 12.5 164.0 5.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000075179 Or8k32 ENSMUST00000216480 ENSMUSP00000151072 TRANSLATION protein_coding - - 5 313.0 0.0 1.0 12.5 164.0 5.0 -4,-7 0.8983 - 11.0 ALTERNATIVE:1 ENSMUSG00000015337 Endog ENSMUST00000015481 ENSMUSP00000015481 TRANSLATION protein_coding - CCDS15872.1 1 294.0 0.0 3.0 4.0 209.9 0.0 1,-4 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000027655 Dhx35 ENSMUST00000156893 ENSMUSP00000119497 TRANSLATION protein_coding stop - 3 213.0 9.0 5.1 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027655 Dhx35 ENSMUST00000109478 ENSMUSP00000105104 TRANSLATION protein_coding - - 5 703.0 10.0 18.15 26.1 190.0 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000027655 Dhx35 ENSMUST00000146797 - NO_TRANSLATION retained_intron ENSMUSG00000027655 Dhx35 ENSMUST00000029186 ENSMUSP00000029186 TRANSLATION protein_coding - CCDS16993.1 1 679.0 10.0 17.4 0.1 149.7 0.0 -4,-5 0.0778 11 14.082 MINOR ENSMUSG00000027655 Dhx35 ENSMUST00000145692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027655 Dhx35 ENSMUST00000157070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027655 Dhx35 ENSMUST00000143195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027655 Dhx35 ENSMUST00000133720 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027655 Dhx35 ENSMUST00000148359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009614 Sardh ENSMUST00000091224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009614 Sardh ENSMUST00000102886 ENSMUSP00000099950 TRANSLATION protein_coding - CCDS15826.1 1 919.0 32.0 20.53 8.3 528.2 0.0 -4,0 1.0 26 21.0 PRINCIPAL:1 ENSMUSG00000009614 Sardh ENSMUST00000156434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009614 Sardh ENSMUST00000142136 - NO_TRANSLATION retained_intron ENSMUSG00000009614 Sardh ENSMUST00000129975 ENSMUSP00000120170 TRANSLATION protein_coding stop - 3 72.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000009614 Sardh ENSMUST00000139312 ENSMUSP00000119866 TRANSLATION protein_coding stop - 3 197.0 15.0 2.95 0.0 83.9 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000009614 Sardh ENSMUST00000144448 - NO_TRANSLATION retained_intron ENSMUSG00000009614 Sardh ENSMUST00000127805 - NO_TRANSLATION retained_intron ENSMUSG00000009614 Sardh ENSMUST00000149733 ENSMUSP00000120478 TRANSLATION protein_coding stop - 3 203.0 15.0 2.95 0.0 85.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000009614 Sardh ENSMUST00000147089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027170 Eif3m ENSMUST00000131266 - NO_TRANSLATION retained_intron ENSMUSG00000027170 Eif3m ENSMUST00000111110 ENSMUSP00000106739 TRANSLATION protein_coding - - 5 242.0 0.0 6.75 1.0 56.1 0.0 -4,-5 0.0721 8 6.0 MINOR ENSMUSG00000027170 Eif3m ENSMUST00000028592 ENSMUSP00000028592 TRANSLATION protein_coding - CCDS16495.1 1 374.0 0.0 9.75 34.2 56.1 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000027170 Eif3m ENSMUST00000148476 ENSMUSP00000122339 TRANSLATION protein_coding start - 3 143.0 0.0 4.25 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000111747 Or5w1 ENSMUST00000099857 ENSMUSP00000097443 TRANSLATION protein_coding - CCDS16301.1 2 312.0 0.0 1.0 8.2 176.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111747 Or5w1 ENSMUST00000135875 ENSMUSP00000150837 TRANSLATION protein_coding - CCDS16301.1 5 312.0 0.0 1.0 8.2 176.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111747 Or5w1 ENSMUST00000213939 ENSMUSP00000150358 TRANSLATION protein_coding - CCDS16301.1 - 312.0 0.0 1.0 8.2 176.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000002104 Rapsn ENSMUST00000111445 ENSMUSP00000107072 TRANSLATION protein_coding - - 5 353.0 8.0 5.75 1.7 180.8 0.0 -4,-5 0.1289 3 15.18 MINOR ENSMUSG00000002104 Rapsn ENSMUST00000128008 - NO_TRANSLATION retained_intron ENSMUSG00000002104 Rapsn ENSMUST00000050323 ENSMUSP00000054150 TRANSLATION protein_coding - CCDS16422.1 1 412.0 8.0 7.25 16.4 180.8 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000002104 Rapsn ENSMUST00000111446 ENSMUSP00000107073 TRANSLATION protein_coding - - 1 359.0 8.0 6.25 1.3 168.0 0.0 -4,-5 0.0217 2 15.31 MINOR ENSMUSG00000000823 Zfp512b ENSMUST00000135561 ENSMUSP00000121721 TRANSLATION protein_coding start - 5 55.0 6.0 0.5 0.0 0.0 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000000823 Zfp512b ENSMUST00000155947 - NO_TRANSLATION retained_intron ENSMUSG00000000823 Zfp512b ENSMUST00000108789 ENSMUSP00000104417 TRANSLATION protein_coding - CCDS50855.1 1 869.0 24.0 2.998 0.4 15.6 0.0 -4,-6 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000000823 Zfp512b ENSMUST00000153998 ENSMUSP00000123096 TRANSLATION protein_coding stop - 2 71.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0004 2 -2.0 MINOR ENSMUSG00000000823 Zfp512b ENSMUST00000131866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000823 Zfp512b ENSMUST00000132538 ENSMUSP00000119677 TRANSLATION nonsense_mediated_decay start - 3 103.0 8.0 2.0 0.0 0.0 0.0 -4,-5 0.0004 3 -2.0 MINOR ENSMUSG00000000823 Zfp512b ENSMUST00000150552 - NO_TRANSLATION retained_intron ENSMUSG00000000823 Zfp512b ENSMUST00000133598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000823 Zfp512b ENSMUST00000128553 ENSMUSP00000115601 TRANSLATION protein_coding start - 1 879.0 24.0 2.998 0.0 15.6 0.0 -4,-5 0.2517 12 -2.0 MINOR ENSMUSG00000000823 Zfp512b ENSMUST00000140103 ENSMUSP00000123579 TRANSLATION protein_coding start - 5 65.0 6.0 0.5 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000027650 Tti1 ENSMUST00000109522 ENSMUSP00000105148 TRANSLATION protein_coding - CCDS16983.1 1 1085.0 0.0 0.0 4.2 0.0 0.0 -4,-5 1.0 8 2.0 PRINCIPAL:1 ENSMUSG00000027650 Tti1 ENSMUST00000029179 ENSMUSP00000029179 TRANSLATION protein_coding - CCDS16983.1 1 1085.0 0.0 0.0 4.2 0.0 0.0 -4,-5 1.0 8 2.0 PRINCIPAL:1 ENSMUSG00000027650 Tti1 ENSMUST00000124338 ENSMUSP00000116592 TRANSLATION protein_coding stop - 3 182.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0143 1 -2.0 MINOR ENSMUSG00000027650 Tti1 ENSMUST00000126541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035093 Secisbp2l ENSMUST00000136450 - NO_TRANSLATION retained_intron ENSMUSG00000035093 Secisbp2l ENSMUST00000053699 ENSMUSP00000055772 TRANSLATION protein_coding - CCDS38230.1 1 1089.0 0.0 0.0 0.4 75.3 0.0 -4,-5 1.0 12 5.916 PRINCIPAL:1 ENSMUSG00000035093 Secisbp2l ENSMUST00000139944 ENSMUSP00000121529 TRANSLATION protein_coding start - 1 428.0 0.0 0.0 0.0 76.4 0.0 -4,-5 0.0729 4 -2.0 MINOR ENSMUSG00000034850 Tmem127 ENSMUST00000035871 ENSMUSP00000035434 TRANSLATION protein_coding - CCDS16697.1 1 238.0 0.0 3.0 27.5 0.0 6.0 -2,0 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000034850 Tmem127 ENSMUST00000174288 ENSMUSP00000134629 TRANSLATION protein_coding - - 2 154.0 0.0 2.0 3.3 0.0 6.0 -1,-5 0.1129 - 4.35 MINOR ENSMUSG00000034850 Tmem127 ENSMUST00000174503 ENSMUSP00000133701 TRANSLATION protein_coding stop - 5 145.0 0.0 2.0 0.0 0.0 3.0 -2,0 0.0204 - -2.0 MINOR ENSMUSG00000027455 Nsfl1c ENSMUST00000133197 - NO_TRANSLATION retained_intron ENSMUSG00000027455 Nsfl1c ENSMUST00000028949 ENSMUSP00000028949 TRANSLATION protein_coding - CCDS71160.1 1 370.0 0.0 6.1 27.4 222.9 0.0 -4,-5 1.0 16 12.0 PRINCIPAL:4 ENSMUSG00000027455 Nsfl1c ENSMUST00000139229 - NO_TRANSLATION retained_intron ENSMUSG00000027455 Nsfl1c ENSMUST00000156182 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027455 Nsfl1c ENSMUST00000103160 ENSMUSP00000099449 TRANSLATION protein_coding - - 5 339.0 0.0 5.6 1.0 222.9 0.0 -4,-5 0.0859 14 6.998 MINOR ENSMUSG00000027455 Nsfl1c ENSMUST00000146695 - NO_TRANSLATION retained_intron ENSMUSG00000027455 Nsfl1c ENSMUST00000134081 - NO_TRANSLATION retained_intron ENSMUSG00000027455 Nsfl1c ENSMUST00000125270 - NO_TRANSLATION retained_intron ENSMUSG00000027455 Nsfl1c ENSMUST00000153333 - NO_TRANSLATION retained_intron ENSMUSG00000027455 Nsfl1c ENSMUST00000089140 ENSMUSP00000086542 TRANSLATION protein_coding - CCDS16868.1 5 372.0 0.0 6.1 27.4 222.9 0.0 -4,-5 0.9918 16 12.0 ALTERNATIVE:1 ENSMUSG00000027580 Helz2 ENSMUST00000121484 ENSMUSP00000112917 TRANSLATION protein_coding - - 5 2903.0 24.0 2.8 0.0 631.6 0.0 -4,-2 0.1845 37 8.798 MINOR ENSMUSG00000027580 Helz2 ENSMUST00000108831 ENSMUSP00000104459 TRANSLATION protein_coding - CCDS38380.1 5 2947.0 30.0 3.4 0.1 664.5 0.0 -4,-2 0.8734 38 14.0 ALTERNATIVE:2 ENSMUSG00000027580 Helz2 ENSMUST00000094203 ENSMUSP00000091756 TRANSLATION protein_coding - - 5 2970.0 30.0 3.4 0.0 664.5 0.0 -4,-2 1.0 38 14.0 PRINCIPAL:4 ENSMUSG00000027580 Helz2 ENSMUST00000149417 - NO_TRANSLATION retained_intron ENSMUSG00000027580 Helz2 ENSMUST00000155049 - NO_TRANSLATION retained_intron ENSMUSG00000026870 Cutal ENSMUST00000184164 ENSMUSP00000144477 TRANSLATION nonsense_mediated_decay - CCDS15954.1 5 156.0 0.0 3.875 4.4 101.3 1.0 -3,-5 1.0 - -2.0 MINOR ENSMUSG00000026870 Cutal ENSMUST00000149250 - NO_TRANSLATION retained_intron ENSMUSG00000026870 Cutal ENSMUST00000028228 ENSMUSP00000144258 TRANSLATION protein_coding - CCDS79783.1 1 111.0 0.0 2.625 0.0 50.6 1.0 -3,-5 0.0052 1 6.456 MINOR ENSMUSG00000026870 Cutal ENSMUST00000113068 ENSMUSP00000108691 TRANSLATION protein_coding - CCDS15954.1 1 156.0 0.0 3.875 4.4 101.3 1.0 -3,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000054582 Pabpc1l ENSMUST00000141671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054582 Pabpc1l ENSMUST00000126272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054582 Pabpc1l ENSMUST00000067715 ENSMUSP00000096701 TRANSLATION protein_coding - CCDS50792.1 1 607.0 0.0 10.6 0.3 377.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054582 Pabpc1l ENSMUST00000150523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054582 Pabpc1l ENSMUST00000156087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016921 Srsf6 ENSMUST00000126163 ENSMUSP00000141349 TRANSLATION protein_coding - - 5 135.0 0.0 2.0 2.1 60.6 0.0 -4,-7 0.2731 5 6.79 MINOR ENSMUSG00000016921 Srsf6 ENSMUST00000130411 ENSMUSP00000119065 TRANSLATION protein_coding - CCDS17002.1 1 339.0 0.0 3.6 0.4 110.8 0.0 -4,-7 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000016921 Srsf6 ENSMUST00000193611 - NO_TRANSLATION retained_intron ENSMUSG00000016921 Srsf6 ENSMUST00000017065 ENSMUSP00000142183 TRANSLATION nonsense_mediated_decay - - 5 135.0 0.0 2.0 2.1 60.6 0.0 -4,-7 0.2731 5 -2.0 MINOR ENSMUSG00000026735 Ptf1a ENSMUST00000028068 ENSMUSP00000028068 TRANSLATION protein_coding - CCDS15715.1 1 324.0 0.0 0.5 6.7 66.4 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000027312 Atrn ENSMUST00000151364 - NO_TRANSLATION retained_intron ENSMUSG00000027312 Atrn ENSMUST00000028781 ENSMUSP00000028781 TRANSLATION protein_coding - CCDS16751.1 1 1428.0 2.0 4.01175 0.0 276.1 0.0 -4,-2 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000027312 Atrn ENSMUST00000134964 - NO_TRANSLATION retained_intron ENSMUSG00000027312 Atrn ENSMUST00000132557 - NO_TRANSLATION retained_intron ENSMUSG00000027312 Atrn ENSMUST00000156982 - NO_TRANSLATION retained_intron ENSMUSG00000078879 Zfp973 ENSMUST00000108985 ENSMUSP00000104613 TRANSLATION protein_coding - CCDS84596.1 5 318.0 30.0 2.5 0.0 205.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078879 Zfp973 ENSMUST00000121956 ENSMUSP00000113873 TRANSLATION protein_coding - - 1 83.0 0.0 1.75 0.0 71.2 0.0 -4,-6 0.0 - 4.2 MINOR ENSMUSG00000078879 Zfp973 ENSMUST00000141122 ENSMUSP00000115307 TRANSLATION nonsense_mediated_decay - - 5 83.0 0.0 1.5 0.0 71.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000027160 Ccdc34 ENSMUST00000126990 - NO_TRANSLATION retained_intron ENSMUSG00000027160 Ccdc34 ENSMUST00000078939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027160 Ccdc34 ENSMUST00000127630 ENSMUSP00000130554 TRANSLATION nonsense_mediated_decay start - 2 184.0 0.0 2.0 0.0 72.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027160 Ccdc34 ENSMUST00000028580 ENSMUSP00000028580 TRANSLATION protein_coding - CCDS50655.1 1 367.0 0.0 4.0 5.5 176.0 0.0 -4,0 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027160 Ccdc34 ENSMUST00000150183 ENSMUSP00000127363 TRANSLATION protein_coding start - 1 140.0 0.0 1.0 0.0 36.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027160 Ccdc34 ENSMUST00000155110 - NO_TRANSLATION retained_intron ENSMUSG00000027160 Ccdc34 ENSMUST00000152930 - NO_TRANSLATION retained_intron ENSMUSG00000025816 Sec61a2 ENSMUST00000148745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025816 Sec61a2 ENSMUST00000153240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025816 Sec61a2 ENSMUST00000132469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025816 Sec61a2 ENSMUST00000132908 ENSMUSP00000141220 TRANSLATION protein_coding start - 3 120.0 0.0 2.75 0.0 0.0 5.0 -4,-7 0.0143 1 -2.0 MINOR ENSMUSG00000025816 Sec61a2 ENSMUST00000194565 - NO_TRANSLATION retained_intron ENSMUSG00000025816 Sec61a2 ENSMUST00000102981 ENSMUSP00000100046 TRANSLATION protein_coding - CCDS15668.1 1 476.0 0.0 11.0 36.9 0.0 14.0 -4,-7 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000025816 Sec61a2 ENSMUST00000124985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025816 Sec61a2 ENSMUST00000193792 ENSMUSP00000141333 TRANSLATION protein_coding - - 1 410.0 0.0 9.0 1.1 0.0 13.0 -4,-7 0.089 2 2.01 MINOR ENSMUSG00000025816 Sec61a2 ENSMUST00000124859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025816 Sec61a2 ENSMUST00000026926 ENSMUSP00000026926 TRANSLATION protein_coding - - 5 175.0 0.0 4.25 0.0 0.0 4.0 -4,-7 0.0143 - 0.0 MINOR ENSMUSG00000070530 Wfdc16 ENSMUST00000109336 ENSMUSP00000104960 TRANSLATION protein_coding - CCDS50795.1 1 111.0 0.0 1.1 0.1 0.0 0.0 2,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000068815 Or5w18 ENSMUST00000111568 ENSMUSP00000107194 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 12.5 153.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068815 Or5w18 ENSMUST00000090708 ENSMUSP00000088210 TRANSLATION protein_coding - CCDS16309.1 - 314.0 0.0 1.0 2.1 153.5 5.0 -4,-7 0.6072 - 12.288 MINOR ENSMUSG00000068815 Or5w18 ENSMUST00000099852 ENSMUSP00000097438 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 12.5 153.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052033 Pfdn4 ENSMUST00000139328 ENSMUSP00000127453 TRANSLATION protein_coding stop - 2 15.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052033 Pfdn4 ENSMUST00000109147 ENSMUSP00000104775 TRANSLATION protein_coding stop - 2 49.0 0.0 1.5 0.0 42.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000052033 Pfdn4 ENSMUST00000075087 ENSMUSP00000074596 TRANSLATION protein_coding - CCDS50808.1 1 77.0 0.0 2.25 2.1 58.9 0.0 -4,-5 0.0286 1 3.65 MINOR ENSMUSG00000052033 Pfdn4 ENSMUST00000136839 ENSMUSP00000130383 TRANSLATION protein_coding - CCDS57190.1 1 130.0 0.0 3.58 15.3 77.8 0.0 -4,-5 0.9146 2 11.334 ALTERNATIVE:1 ENSMUSG00000052033 Pfdn4 ENSMUST00000063682 ENSMUSP00000070596 TRANSLATION protein_coding - CCDS50807.1 1 134.0 0.0 3.58 15.3 91.1 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000052033 Pfdn4 ENSMUST00000170167 ENSMUSP00000131911 TRANSLATION protein_coding stop - 2 47.0 0.0 1.5 0.0 41.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000052033 Pfdn4 ENSMUST00000109148 ENSMUSP00000104776 TRANSLATION protein_coding - CCDS50808.1 3 77.0 0.0 2.25 2.1 58.9 0.0 -4,-5 0.0286 1 3.65 MINOR ENSMUSG00000050383 Svs3b ENSMUST00000063132 ENSMUSP00000062011 TRANSLATION protein_coding - CCDS38321.1 1 265.0 0.0 0.0 0.1 26.3 0.0 3,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000047594 Or10ag57 ENSMUST00000215371 ENSMUSP00000149403 TRANSLATION protein_coding - CCDS16289.1 5 326.0 0.0 1.0 0.1 171.9 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047594 Or10ag57 ENSMUST00000056435 ENSMUSP00000052190 TRANSLATION protein_coding - CCDS16289.1 - 326.0 0.0 1.0 0.1 171.9 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079110 Capn3 ENSMUST00000151924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079110 Capn3 ENSMUST00000151342 ENSMUSP00000159249 TRANSLATION protein_coding stop - 2 136.0 15.0 4.08 0.0 61.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000079110 Capn3 ENSMUST00000141181 ENSMUSP00000159281 TRANSLATION protein_coding - - 3 191.0 23.0 5.91 0.0 75.6 0.0 -4,-5 0.0 6 0.0 MINOR ENSMUSG00000079110 Capn3 ENSMUST00000125238 ENSMUSP00000159219 TRANSLATION protein_coding - - 3 156.0 18.0 4.91 5.2 75.7 0.0 -4,-5 0.1059 6 1.2 MINOR ENSMUSG00000079110 Capn3 ENSMUST00000110721 ENSMUSP00000106349 TRANSLATION protein_coding - CCDS50679.1 1 729.0 32.0 16.29 6.3 721.5 0.0 -4,-6 0.4674 15 14.152 MINOR ENSMUSG00000079110 Capn3 ENSMUST00000239355 - NO_TRANSLATION retained_intron ENSMUSG00000079110 Capn3 ENSMUST00000139336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079110 Capn3 ENSMUST00000110719 ENSMUSP00000106347 TRANSLATION protein_coding - - 5 785.0 32.0 14.59 0.1 706.7 0.0 -4,-7 0.0516 13 8.598 MINOR ENSMUSG00000079110 Capn3 ENSMUST00000028749 ENSMUSP00000028749 TRANSLATION protein_coding - CCDS16620.1 1 821.0 32.0 15.5796 10.5 810.9 0.0 -4,-6 1.0 17 19.294 PRINCIPAL:1 ENSMUSG00000079110 Capn3 ENSMUST00000239364 ENSMUSP00000159260 TRANSLATION protein_coding - - - 815.0 32.0 15.54 9.3 791.9 0.0 -4,-6 0.6936 16 17.732 MINOR ENSMUSG00000079110 Capn3 ENSMUST00000028748 ENSMUSP00000028748 TRANSLATION protein_coding - CCDS50680.1 1 709.0 32.0 16.09 15.0 717.6 0.0 -4,-7 0.8059 13 16.0 MINOR ENSMUSG00000079110 Capn3 ENSMUST00000239291 ENSMUSP00000159220 TRANSLATION nonsense_mediated_decay start - - 178.0 0.0 2.25 0.0 205.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000079110 Capn3 ENSMUST00000110716 ENSMUSP00000106344 TRANSLATION protein_coding - - 5 757.0 32.0 15.34 0.1 709.6 0.0 -4,-7 0.0587 13 10.098 MINOR ENSMUSG00000079110 Capn3 ENSMUST00000090028 ENSMUSP00000087482 TRANSLATION protein_coding - - 5 737.0 32.0 15.34 0.1 714.7 0.0 -4,-7 0.0629 13 10.326 MINOR ENSMUSG00000075121 Or4c103 ENSMUST00000099818 ENSMUSP00000097406 TRANSLATION protein_coding - CCDS16343.1 - 308.0 0.0 1.0 0.0 160.0 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075121 Or4c103 ENSMUST00000213545 ENSMUSP00000149442 TRANSLATION protein_coding - CCDS16343.1 5 308.0 0.0 1.0 0.0 160.0 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074521 Gm14327 ENSMUST00000099001 ENSMUSP00000096599 TRANSLATION protein_coding - - 5 88.0 0.0 2.2 0.0 74.0 0.0 -4,-5 0.7366 - 12.0 PRINCIPAL:1 ENSMUSG00000074521 Gm14327 ENSMUST00000108935 ENSMUSP00000104563 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 74.0 0.0 -4,-5 0.005 - 10.77 MINOR ENSMUSG00000057133 Chd6 ENSMUST00000155066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057133 Chd6 ENSMUST00000134178 ENSMUSP00000123240 TRANSLATION protein_coding stop - 2 1183.0 7.0 9.03 0.0 368.1 0.0 -4,-6 0.2246 3 -2.0 MINOR ENSMUSG00000057133 Chd6 ENSMUST00000039782 ENSMUSP00000042291 TRANSLATION protein_coding - CCDS17000.1 1 2711.0 7.0 9.03 3.1 368.1 0.0 -4,-6 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000057133 Chd6 ENSMUST00000149866 - NO_TRANSLATION retained_intron ENSMUSG00000057133 Chd6 ENSMUST00000143081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057133 Chd6 ENSMUST00000138078 - NO_TRANSLATION retained_intron ENSMUSG00000057133 Chd6 ENSMUST00000137152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057133 Chd6 ENSMUST00000130265 ENSMUSP00000117075 TRANSLATION protein_coding start - 5 217.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057133 Chd6 ENSMUST00000137831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057133 Chd6 ENSMUST00000155918 - NO_TRANSLATION retained_intron ENSMUSG00000057133 Chd6 ENSMUST00000125179 - NO_TRANSLATION retained_intron ENSMUSG00000075316 Scn9a ENSMUST00000151234 - NO_TRANSLATION retained_intron ENSMUSG00000075316 Scn9a ENSMUST00000100064 ENSMUSP00000097642 TRANSLATION protein_coding - CCDS71063.1 1 1984.0 4.0 11.9 6.0 1331.5 13.0 -4,-7 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000075316 Scn9a ENSMUST00000112354 ENSMUSP00000107973 TRANSLATION protein_coding - - 5 1973.0 4.0 11.9 5.9 1312.4 13.0 -4,-7 0.6911 6 16.814 MINOR ENSMUSG00000075316 Scn9a ENSMUST00000100063 ENSMUSP00000097641 TRANSLATION protein_coding - - 5 1975.0 4.0 11.9 0.0 1313.1 13.0 -4,-7 0.2425 6 14.896 MINOR ENSMUSG00000075316 Scn9a ENSMUST00000141603 - NO_TRANSLATION retained_intron ENSMUSG00000026775 Yme1l1 ENSMUST00000125004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026775 Yme1l1 ENSMUST00000028117 ENSMUSP00000028117 TRANSLATION protein_coding - CCDS15728.1 1 715.0 15.0 9.575 21.8 388.7 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000026775 Yme1l1 ENSMUST00000134342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026775 Yme1l1 ENSMUST00000149240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026775 Yme1l1 ENSMUST00000147750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026775 Yme1l1 ENSMUST00000148616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075161 Or5aq6 ENSMUST00000214636 ENSMUSP00000150159 TRANSLATION protein_coding - CCDS16280.1 5 312.0 0.0 1.0 4.7 172.8 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075161 Or5aq6 ENSMUST00000217066 ENSMUSP00000149282 TRANSLATION protein_coding - CCDS16280.1 5 312.0 0.0 1.0 4.7 172.8 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075161 Or5aq6 ENSMUST00000099863 ENSMUSP00000097449 TRANSLATION protein_coding - CCDS16280.1 - 312.0 0.0 1.0 4.7 172.8 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035236 Scai ENSMUST00000204500 ENSMUSP00000144844 TRANSLATION nonsense_mediated_decay start - 5 88.0 0.0 0.0 0.0 83.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000035236 Scai ENSMUST00000203872 - NO_TRANSLATION retained_intron ENSMUSG00000035236 Scai ENSMUST00000157038 - NO_TRANSLATION retained_intron ENSMUSG00000035236 Scai ENSMUST00000204093 ENSMUSP00000145133 TRANSLATION nonsense_mediated_decay - - 5 490.0 0.0 0.0 0.0 589.3 0.0 -4,-2 0.0044 11 -2.0 MINOR ENSMUSG00000035236 Scai ENSMUST00000204404 ENSMUSP00000145381 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000035236 Scai ENSMUST00000147433 ENSMUSP00000116359 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000035236 Scai ENSMUST00000038874 ENSMUSP00000037194 TRANSLATION protein_coding - CCDS38121.1 1 606.0 0.0 0.0 10.4 704.6 0.0 -4,-2 1.0 15 9.0 PRINCIPAL:1 ENSMUSG00000035236 Scai ENSMUST00000142872 ENSMUSP00000118536 TRANSLATION protein_coding stop - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035236 Scai ENSMUST00000131225 - NO_TRANSLATION retained_intron ENSMUSG00000035236 Scai ENSMUST00000203399 - NO_TRANSLATION retained_intron ENSMUSG00000039449 Prpf18 ENSMUST00000192470 ENSMUSP00000141457 TRANSLATION protein_coding stop - 5 73.0 0.0 1.33 0.0 54.1 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000039449 Prpf18 ENSMUST00000035721 ENSMUSP00000041428 TRANSLATION protein_coding - CCDS15657.1 1 342.0 0.0 3.15 33.8 261.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000039449 Prpf18 ENSMUST00000153881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039449 Prpf18 ENSMUST00000144650 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039449 Prpf18 ENSMUST00000140818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039449 Prpf18 ENSMUST00000152362 ENSMUSP00000116495 TRANSLATION protein_coding - CCDS15657.1 1 342.0 0.0 3.15 33.8 261.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000060742 Or8k30 ENSMUST00000076263 ENSMUSP00000075612 TRANSLATION protein_coding - CCDS16259.1 - 313.0 0.0 1.0 12.5 173.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075153 Or5w12 ENSMUST00000099853 ENSMUSP00000097439 TRANSLATION protein_coding - CCDS16302.1 - 310.0 0.0 1.0 14.5 150.0 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075153 Or5w12 ENSMUST00000213835 ENSMUSP00000150079 TRANSLATION protein_coding - CCDS16302.1 5 310.0 0.0 1.0 14.5 150.0 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037683 Armc3 ENSMUST00000114640 ENSMUSP00000110287 TRANSLATION protein_coding - CCDS38052.1 1 881.0 0.0 5.405 0.0 97.9 0.0 -4,-5 0.3334 6 12.0 MINOR ENSMUSG00000037683 Armc3 ENSMUST00000049255 ENSMUSP00000048784 TRANSLATION protein_coding - CCDS70983.1 1 869.0 0.0 5.405 9.6 97.9 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000027011 Ube2e3 ENSMUST00000124120 ENSMUSP00000121601 TRANSLATION protein_coding stop - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027011 Ube2e3 ENSMUST00000153614 - NO_TRANSLATION retained_intron ENSMUSG00000027011 Ube2e3 ENSMUST00000121433 ENSMUSP00000113463 TRANSLATION protein_coding - CCDS16167.1 5 207.0 0.0 4.6 36.9 157.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027011 Ube2e3 ENSMUST00000130914 ENSMUSP00000116644 TRANSLATION protein_coding stop - 3 103.0 0.0 1.85 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027011 Ube2e3 ENSMUST00000138864 - NO_TRANSLATION retained_intron ENSMUSG00000027011 Ube2e3 ENSMUST00000028398 ENSMUSP00000028398 TRANSLATION protein_coding - CCDS16167.1 1 207.0 0.0 4.6 36.9 157.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027011 Ube2e3 ENSMUST00000153266 - NO_TRANSLATION retained_intron ENSMUSG00000094764 Or1j17 ENSMUST00000213258 ENSMUSP00000149916 TRANSLATION protein_coding - CCDS15978.1 5 309.0 0.0 1.0 6.8 195.8 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094764 Or1j17 ENSMUST00000078854 ENSMUSP00000077897 TRANSLATION protein_coding - CCDS15978.1 - 309.0 0.0 1.0 6.8 195.8 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027109 Sp3 ENSMUST00000102689 ENSMUSP00000099750 TRANSLATION protein_coding - CCDS16122.1 1 783.0 12.0 1.56 1.5 64.9 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:2 ENSMUSG00000027109 Sp3 ENSMUST00000129565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027109 Sp3 ENSMUST00000141372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027109 Sp3 ENSMUST00000133615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027109 Sp3 ENSMUST00000066003 ENSMUSP00000065807 TRANSLATION protein_coding - - 5 739.0 12.0 1.56 0.4 64.9 0.0 -4,-5 0.1508 4 14.0 ALTERNATIVE:2 ENSMUSG00000074593 Spint5 ENSMUST00000103097 ENSMUSP00000099386 TRANSLATION protein_coding - CCDS17052.1 1 105.0 0.0 1.04 0.0 59.3 0.0 2,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000014353 Tmem87b ENSMUST00000110325 ENSMUSP00000105954 TRANSLATION protein_coding - CCDS38234.1 1 555.0 0.0 6.16 4.6 335.5 6.0 1,-3 1.0 6 8.854 PRINCIPAL:4 ENSMUSG00000014353 Tmem87b ENSMUST00000152210 ENSMUSP00000119093 TRANSLATION protein_coding start - 1 548.0 0.0 5.785 0.0 318.9 6.0 4,-1 0.0479 6 -2.0 MINOR ENSMUSG00000014353 Tmem87b ENSMUST00000143398 ENSMUSP00000159105 TRANSLATION protein_coding - - 5 555.0 0.0 6.4 4.6 338.9 6.0 1,-3 0.9156 6 9.334 ALTERNATIVE:1 ENSMUSG00000014353 Tmem87b ENSMUST00000126160 - NO_TRANSLATION retained_intron ENSMUSG00000014353 Tmem87b ENSMUST00000143686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075198 Or8j3 ENSMUST00000215763 ENSMUSP00000148982 TRANSLATION protein_coding - CCDS16244.1 3 315.0 0.0 1.0 12.5 146.6 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075198 Or8j3 ENSMUST00000099904 ENSMUSP00000097488 TRANSLATION protein_coding - CCDS16244.1 - 315.0 0.0 1.0 12.5 146.6 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075198 Or8j3 ENSMUST00000216885 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002108 Nr1h3 ENSMUST00000136234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002108 Nr1h3 ENSMUST00000130031 - NO_TRANSLATION retained_intron ENSMUSG00000002108 Nr1h3 ENSMUST00000111354 ENSMUSP00000106986 TRANSLATION protein_coding - CCDS16426.1 1 445.0 8.0 6.8 10.1 198.5 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000002108 Nr1h3 ENSMUST00000133261 - NO_TRANSLATION retained_intron ENSMUSG00000002108 Nr1h3 ENSMUST00000111356 ENSMUSP00000106988 TRANSLATION protein_coding - CCDS16426.1 1 445.0 8.0 6.8 10.1 198.5 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000002108 Nr1h3 ENSMUST00000150654 - NO_TRANSLATION retained_intron ENSMUSG00000002108 Nr1h3 ENSMUST00000002177 ENSMUSP00000002177 TRANSLATION protein_coding - CCDS16426.1 1 445.0 8.0 6.8 10.1 198.5 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000002108 Nr1h3 ENSMUST00000111355 ENSMUSP00000106987 TRANSLATION protein_coding - - 5 385.0 8.0 5.8 1.0 158.0 0.0 -4,-5 0.0336 2 13.572 MINOR ENSMUSG00000026797 Stxbp1 ENSMUST00000192333 - NO_TRANSLATION retained_intron ENSMUSG00000026797 Stxbp1 ENSMUST00000077458 ENSMUSP00000089051 TRANSLATION protein_coding - CCDS50572.1 1 603.0 0.0 13.984 23.0 445.2 0.0 -4,-5 0.9776 40 11.236 ALTERNATIVE:1 ENSMUSG00000026797 Stxbp1 ENSMUST00000113222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026797 Stxbp1 ENSMUST00000050000 ENSMUSP00000052440 TRANSLATION protein_coding - CCDS15933.1 1 594.0 0.0 14.134 25.9 443.6 0.0 -4,-5 1.0 40 12.0 PRINCIPAL:4 ENSMUSG00000026797 Stxbp1 ENSMUST00000208840 ENSMUSP00000146437 TRANSLATION protein_coding stop - 5 100.0 0.0 3.0 0.0 77.6 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000026810 Dpm2 ENSMUST00000028151 ENSMUSP00000028151 TRANSLATION protein_coding - CCDS38104.1 1 84.0 0.0 2.5 30.1 109.0 2.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026810 Dpm2 ENSMUST00000128039 - NO_TRANSLATION retained_intron ENSMUSG00000026810 Dpm2 ENSMUST00000140592 ENSMUSP00000124665 TRANSLATION protein_coding - - 5 114.0 0.0 2.0 0.0 90.7 1.0 -4,-5 0.0015 - 9.702 MINOR ENSMUSG00000026810 Dpm2 ENSMUST00000150419 - NO_TRANSLATION retained_intron ENSMUSG00000048058 Ldlrad3 ENSMUST00000111222 ENSMUSP00000106853 TRANSLATION protein_coding - - 5 313.0 10.0 2.0 0.4 82.2 0.0 3,-2 0.0116 - 9.822 MINOR ENSMUSG00000048058 Ldlrad3 ENSMUST00000058790 ENSMUSP00000054134 TRANSLATION protein_coding - CCDS38187.1 1 345.0 15.0 3.0 7.8 129.6 0.0 3,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000048058 Ldlrad3 ENSMUST00000127888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034278 Dnajc17 ENSMUST00000038439 ENSMUSP00000041841 TRANSLATION protein_coding - CCDS16593.1 1 303.0 0.0 7.55 10.7 100.7 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000034278 Dnajc17 ENSMUST00000141009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034278 Dnajc17 ENSMUST00000125731 - NO_TRANSLATION retained_intron ENSMUSG00000064329 Scn1a ENSMUST00000094951 ENSMUSP00000092558 TRANSLATION protein_coding - - 5 1981.0 0.0 13.83 7.9 1314.9 20.0 -4,-5 0.6577 18 9.897 MINOR ENSMUSG00000064329 Scn1a ENSMUST00000077489 ENSMUSP00000076697 TRANSLATION protein_coding - CCDS38131.1 5 1998.0 0.0 13.83 10.9 1363.1 20.0 -4,-5 0.9152 18 13.698 MINOR ENSMUSG00000064329 Scn1a ENSMUST00000200839 ENSMUSP00000144214 TRANSLATION nonsense_mediated_decay start - 5 303.0 0.0 3.95 0.0 242.3 4.0 -4,-5 0.0031 1 -2.0 MINOR ENSMUSG00000064329 Scn1a ENSMUST00000138910 ENSMUSP00000116881 TRANSLATION protein_coding - CCDS38131.1 5 1998.0 0.0 13.83 10.9 1363.1 20.0 -4,-5 0.9152 18 13.698 MINOR ENSMUSG00000064329 Scn1a ENSMUST00000129508 - NO_TRANSLATION retained_intron ENSMUSG00000064329 Scn1a ENSMUST00000156865 ENSMUSP00000144633 TRANSLATION protein_coding start - 1 502.0 0.0 8.366 0.0 390.0 7.0 -4,-5 0.0022 4 -2.0 MINOR ENSMUSG00000064329 Scn1a ENSMUST00000112366 ENSMUSP00000107985 TRANSLATION protein_coding - CCDS84530.1 5 2009.0 0.0 13.83 10.7 1384.8 20.0 -4,-5 1.0 18 14.94 PRINCIPAL:1 ENSMUSG00000033059 Pygb ENSMUST00000154366 - NO_TRANSLATION retained_intron ENSMUSG00000033059 Pygb ENSMUST00000129610 - NO_TRANSLATION retained_intron ENSMUSG00000033059 Pygb ENSMUST00000135717 - NO_TRANSLATION retained_intron ENSMUSG00000033059 Pygb ENSMUST00000045441 ENSMUSP00000035743 TRANSLATION protein_coding - CCDS16862.1 1 843.0 57.0 18.75 36.9 1152.1 0.0 -4,-7 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000033059 Pygb ENSMUST00000139938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017307 Acot8 ENSMUST00000136767 - NO_TRANSLATION retained_intron ENSMUSG00000017307 Acot8 ENSMUST00000134611 ENSMUSP00000133718 TRANSLATION nonsense_mediated_decay - - 5 113.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017307 Acot8 ENSMUST00000103094 ENSMUSP00000099383 TRANSLATION protein_coding - CCDS17057.1 1 320.0 0.0 6.6 7.1 215.1 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000017307 Acot8 ENSMUST00000017451 ENSMUSP00000017451 TRANSLATION protein_coding - - 1 268.0 0.0 4.6 0.0 135.1 0.0 -4,-5 0.0 5 3.198 MINOR ENSMUSG00000017307 Acot8 ENSMUST00000133053 - NO_TRANSLATION retained_intron ENSMUSG00000027134 Lpcat4 ENSMUST00000132314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027134 Lpcat4 ENSMUST00000129503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027134 Lpcat4 ENSMUST00000136219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027134 Lpcat4 ENSMUST00000028554 ENSMUSP00000028554 TRANSLATION protein_coding - CCDS16548.1 1 524.0 0.0 8.42 8.9 54.8 0.0 -4,-2 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000001855 Nup214 ENSMUST00000130975 - NO_TRANSLATION retained_intron ENSMUSG00000001855 Nup214 ENSMUST00000130185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001855 Nup214 ENSMUST00000123062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001855 Nup214 ENSMUST00000065398 ENSMUSP00000066492 TRANSLATION protein_coding - CCDS38098.1 1 2085.0 0.0 9.25 0.0 0.0 0.0 -4,-5 1.0 31 6.0 PRINCIPAL:1 ENSMUSG00000001855 Nup214 ENSMUST00000153096 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001855 Nup214 ENSMUST00000152791 ENSMUSP00000142255 TRANSLATION protein_coding start - 3 147.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0298 - -2.0 MINOR ENSMUSG00000001855 Nup214 ENSMUST00000129496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001855 Nup214 ENSMUST00000124455 - NO_TRANSLATION retained_intron ENSMUSG00000001855 Nup214 ENSMUST00000126301 ENSMUSP00000141436 TRANSLATION protein_coding start/stop - 5 98.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0346 3 -2.0 MINOR ENSMUSG00000001855 Nup214 ENSMUST00000138012 ENSMUSP00000115665 TRANSLATION protein_coding start - 1 581.0 0.0 -0.5 0.0 0.0 0.0 -4,-5 0.0581 2 -2.0 MINOR ENSMUSG00000001855 Nup214 ENSMUST00000146138 - NO_TRANSLATION retained_intron ENSMUSG00000069132 Nxph2 ENSMUST00000102945 ENSMUSP00000100009 TRANSLATION protein_coding - CCDS15729.1 1 261.0 0.0 0.64 14.0 320.2 0.0 0,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026827 Gpd2 ENSMUST00000112618 ENSMUSP00000108237 TRANSLATION protein_coding - - 5 745.0 32.0 6.106 0.0 348.9 0.0 -1,0 0.1576 41 18.0 MINOR ENSMUSG00000026827 Gpd2 ENSMUST00000141536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026827 Gpd2 ENSMUST00000169687 ENSMUSP00000130992 TRANSLATION protein_coding - CCDS16045.1 1 727.0 32.0 6.106 34.9 348.9 0.0 -1,0 1.0 42 22.0 PRINCIPAL:1 ENSMUSG00000026827 Gpd2 ENSMUST00000154612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026827 Gpd2 ENSMUST00000124689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026827 Gpd2 ENSMUST00000148991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026827 Gpd2 ENSMUST00000028167 ENSMUSP00000028167 TRANSLATION protein_coding - CCDS16045.1 1 727.0 32.0 6.106 34.9 348.9 0.0 -1,0 1.0 42 22.0 PRINCIPAL:1 ENSMUSG00000067787 Blcap ENSMUST00000173378 ENSMUSP00000133386 TRANSLATION protein_coding stop - 2 17.0 0.0 0.0 0.0 27.1 0.0 -3,-5 0.0003 - -2.0 MINOR ENSMUSG00000067787 Blcap ENSMUST00000134239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067787 Blcap ENSMUST00000131902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067787 Blcap ENSMUST00000088494 ENSMUSP00000085849 TRANSLATION protein_coding - CCDS16979.1 1 87.0 0.0 0.0 30.9 93.5 1.0 -3,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000067787 Blcap ENSMUST00000109528 ENSMUSP00000105154 TRANSLATION protein_coding - CCDS16979.1 1 87.0 0.0 0.0 30.9 93.5 1.0 -3,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000067787 Blcap ENSMUST00000174336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027195 Hsd17b12 ENSMUST00000145967 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027195 Hsd17b12 ENSMUST00000028619 ENSMUSP00000028619 TRANSLATION protein_coding - CCDS16458.1 1 312.0 27.0 8.5 11.0 152.9 0.0 -4,-7 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000027195 Hsd17b12 ENSMUST00000146580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027195 Hsd17b12 ENSMUST00000127084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027195 Hsd17b12 ENSMUST00000141955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023206 Il15ra ENSMUST00000130245 - NO_TRANSLATION retained_intron ENSMUSG00000023206 Il15ra ENSMUST00000114831 ENSMUSP00000110480 TRANSLATION protein_coding - CCDS70977.1 1 230.0 0.0 2.33 0.0 22.9 2.0 2,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000023206 Il15ra ENSMUST00000135341 ENSMUSP00000132731 TRANSLATION protein_coding - CCDS15687.1 3 123.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.06 - 0.0 MINOR ENSMUSG00000023206 Il15ra ENSMUST00000133975 - NO_TRANSLATION retained_intron ENSMUSG00000023206 Il15ra ENSMUST00000078834 ENSMUSP00000077878 TRANSLATION protein_coding - CCDS15686.1 5 263.0 0.0 2.33 0.0 22.9 2.0 2,-3 0.4184 - 8.0 ALTERNATIVE:2 ENSMUSG00000023206 Il15ra ENSMUST00000091456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023206 Il15ra ENSMUST00000148748 ENSMUSP00000132058 TRANSLATION protein_coding - CCDS70980.1 1 103.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0466 - 0.0 MINOR ENSMUSG00000023206 Il15ra ENSMUST00000123600 ENSMUSP00000130792 TRANSLATION protein_coding start - 1 155.0 0.0 0.83 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023206 Il15ra ENSMUST00000128156 ENSMUSP00000126364 TRANSLATION protein_coding - CCDS15687.1 1 123.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.06 - 0.0 MINOR ENSMUSG00000023206 Il15ra ENSMUST00000138349 ENSMUSP00000131473 TRANSLATION protein_coding - CCDS15687.1 1 123.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.06 - 0.0 MINOR ENSMUSG00000023206 Il15ra ENSMUST00000114832 ENSMUSP00000110481 TRANSLATION protein_coding - - 5 155.0 0.0 1.83 0.0 22.9 2.0 2,-3 0.0811 - 6.71 MINOR ENSMUSG00000023206 Il15ra ENSMUST00000191662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023206 Il15ra ENSMUST00000114834 ENSMUSP00000110483 TRANSLATION protein_coding - CCDS70978.1 1 197.0 0.0 2.33 0.0 22.9 2.0 2,-3 0.3978 - 8.0 ALTERNATIVE:2 ENSMUSG00000023206 Il15ra ENSMUST00000114833 ENSMUSP00000110482 TRANSLATION protein_coding - CCDS70979.1 1 166.0 0.0 1.83 0.0 22.9 2.0 2,-3 0.2055 - 6.71 MINOR ENSMUSG00000023206 Il15ra ENSMUST00000139774 - NO_TRANSLATION retained_intron ENSMUSG00000023206 Il15ra ENSMUST00000138856 ENSMUSP00000120539 TRANSLATION protein_coding stop - 2 89.0 0.0 0.75 0.0 0.0 0.0 2,-3 0.0069 - -2.0 MINOR ENSMUSG00000023206 Il15ra ENSMUST00000126394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023206 Il15ra ENSMUST00000124448 - NO_TRANSLATION retained_intron ENSMUSG00000014361 Mertk ENSMUST00000014505 ENSMUSP00000014505 TRANSLATION protein_coding - CCDS16716.1 1 994.0 19.0 6.95 0.0 396.5 0.0 4,-1 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000014361 Mertk ENSMUST00000140221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068009 Bpifb6 ENSMUST00000088955 ENSMUSP00000086347 TRANSLATION protein_coding - CCDS16920.1 1 449.0 0.0 5.619 7.7 139.9 0.0 3,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000068009 Bpifb6 ENSMUST00000135501 ENSMUSP00000119046 TRANSLATION protein_coding stop - 5 279.0 0.0 1.64 0.0 79.6 0.0 3,-1 0.0004 1 -2.0 MINOR ENSMUSG00000035666 Gtf3c4 ENSMUST00000156468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035666 Gtf3c4 ENSMUST00000171404 ENSMUSP00000132171 TRANSLATION protein_coding - CCDS50550.1 1 676.0 0.0 0.0 4.8 83.4 0.0 -4,-5 0.9237 14 4.262 MINOR ENSMUSG00000035666 Gtf3c4 ENSMUST00000037117 ENSMUSP00000042265 TRANSLATION protein_coding - CCDS15847.1 1 817.0 0.0 0.0 0.0 145.7 0.0 -4,-5 1.0 20 6.0 PRINCIPAL:1 ENSMUSG00000035666 Gtf3c4 ENSMUST00000124390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009207 Lnpk ENSMUST00000064503 ENSMUSP00000066891 TRANSLATION protein_coding - CCDS16137.1 1 425.0 4.0 0.0 9.0 74.5 4.0 -4,-7 0.8496 12 8.667 PRINCIPAL:3 ENSMUSG00000009207 Lnpk ENSMUST00000134764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009207 Lnpk ENSMUST00000134641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009207 Lnpk ENSMUST00000145933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009207 Lnpk ENSMUST00000145293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009207 Lnpk ENSMUST00000134168 ENSMUSP00000123058 TRANSLATION protein_coding stop - 3 31.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000009207 Lnpk ENSMUST00000130586 ENSMUSP00000122488 TRANSLATION protein_coding stop - 5 254.0 0.0 0.0 0.0 0.0 4.0 -4,-7 0.0046 7 -2.0 MINOR ENSMUSG00000009207 Lnpk ENSMUST00000102676 ENSMUSP00000099737 TRANSLATION protein_coding - CCDS50609.1 1 376.0 4.0 0.0 10.0 74.5 4.0 -4,-7 1.0 10 9.0 ALTERNATIVE:1 ENSMUSG00000009207 Lnpk ENSMUST00000127168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009207 Lnpk ENSMUST00000130232 ENSMUSP00000120494 TRANSLATION protein_coding stop - 5 196.0 0.0 0.0 0.0 0.0 4.0 -4,-7 0.0047 4 -2.0 MINOR ENSMUSG00000009207 Lnpk ENSMUST00000111993 ENSMUSP00000107624 TRANSLATION protein_coding - CCDS50609.1 1 376.0 4.0 0.0 10.0 74.5 4.0 -4,-7 1.0 10 9.0 ALTERNATIVE:1 ENSMUSG00000009207 Lnpk ENSMUST00000155006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009207 Lnpk ENSMUST00000154706 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050023 Or5d46 ENSMUST00000213778 ENSMUSP00000149943 TRANSLATION protein_coding - CCDS16331.1 5 315.0 0.0 1.0 6.6 155.7 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050023 Or5d46 ENSMUST00000057439 ENSMUSP00000053353 TRANSLATION protein_coding - CCDS16331.1 - 315.0 0.0 1.0 6.6 155.7 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000115018 Ndor1 ENSMUST00000228627 ENSMUSP00000153819 TRANSLATION protein_coding,RT - - - 141.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.4773 - -2.0 PRINCIPAL:1 ENSMUSG00000027296 Itpka ENSMUST00000028758 ENSMUSP00000028758 TRANSLATION protein_coding - CCDS16607.1 1 459.0 23.0 5.55 7.5 139.6 0.0 -4,-1 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000054766 Set ENSMUST00000134364 ENSMUSP00000114557 TRANSLATION protein_coding stop - 5 215.0 0.0 3.765 0.0 108.0 0.0 -4,-7 0.0037 9 -2.0 MINOR ENSMUSG00000054766 Set ENSMUST00000147590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054766 Set ENSMUST00000125824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054766 Set ENSMUST00000137291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054766 Set ENSMUST00000102866 ENSMUSP00000099930 TRANSLATION protein_coding - CCDS15866.1 1 289.0 0.0 4.26 0.1 115.4 0.0 -4,-7 0.1776 9 11.502 MINOR ENSMUSG00000054766 Set ENSMUST00000149578 ENSMUSP00000119824 TRANSLATION protein_coding stop - 3 151.0 0.0 3.0 0.0 66.5 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000054766 Set ENSMUST00000067996 ENSMUSP00000070002 TRANSLATION protein_coding - CCDS57162.1 1 277.0 0.0 4.5075 1.3 115.4 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000034906 Ncaph ENSMUST00000156625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034906 Ncaph ENSMUST00000146142 - NO_TRANSLATION retained_intron ENSMUSG00000034906 Ncaph ENSMUST00000152806 - NO_TRANSLATION retained_intron ENSMUSG00000034906 Ncaph ENSMUST00000175885 ENSMUSP00000135620 TRANSLATION nonsense_mediated_decay start - 5 60.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000034906 Ncaph ENSMUST00000177191 - NO_TRANSLATION retained_intron ENSMUSG00000034906 Ncaph ENSMUST00000110387 ENSMUSP00000106017 TRANSLATION protein_coding - CCDS16693.2 1 731.0 0.0 2.22 2.2 522.3 0.0 -4,-2 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000032679 Cd59a ENSMUST00000168176 ENSMUSP00000132774 TRANSLATION protein_coding - CCDS16487.1 2 123.0 0.0 2.0 0.0 0.0 0.0 3,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000032679 Cd59a ENSMUST00000153312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032679 Cd59a ENSMUST00000040423 ENSMUSP00000048041 TRANSLATION protein_coding - CCDS16487.1 1 123.0 0.0 2.0 0.0 0.0 0.0 3,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000027540 Ptpn1 ENSMUST00000147210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027540 Ptpn1 ENSMUST00000142717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027540 Ptpn1 ENSMUST00000144249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027540 Ptpn1 ENSMUST00000126839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027540 Ptpn1 ENSMUST00000029053 ENSMUSP00000029053 TRANSLATION protein_coding - CCDS17107.1 1 432.0 11.0 6.75 4.5 263.1 0.0 -4,-5 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000027540 Ptpn1 ENSMUST00000151705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027540 Ptpn1 ENSMUST00000124039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079043 Fastkd5 ENSMUST00000110262 ENSMUSP00000105891 TRANSLATION protein_coding - - 2 762.0 0.0 0.0 2.4 191.0 0.0 -4,-6 1.0 1 3.0 PRINCIPAL:2 ENSMUSG00000079043 Fastkd5 ENSMUST00000179273 ENSMUSP00000137385 TRANSLATION protein_coding - CCDS50713.1 - 807.0 0.0 0.0 0.0 191.0 0.0 -4,-1 0.3093 1 2.0 ALTERNATIVE:2 ENSMUSG00000075376 Rc3h2 ENSMUST00000112936 ENSMUSP00000108558 TRANSLATION protein_coding - CCDS38116.1 5 1187.0 11.0 7.699 16.5 56.4 0.0 -4,-6 1.0 10 18.0 PRINCIPAL:4 ENSMUSG00000075376 Rc3h2 ENSMUST00000112934 ENSMUSP00000108556 TRANSLATION protein_coding - CCDS71046.1 1 1125.0 11.0 7.699 13.2 56.4 0.0 -4,-6 0.9396 10 17.148 ALTERNATIVE:1 ENSMUSG00000075376 Rc3h2 ENSMUST00000143826 - NO_TRANSLATION retained_intron ENSMUSG00000075376 Rc3h2 ENSMUST00000204690 - NO_TRANSLATION retained_intron ENSMUSG00000075376 Rc3h2 ENSMUST00000204959 - NO_TRANSLATION retained_intron ENSMUSG00000075376 Rc3h2 ENSMUST00000205124 - NO_TRANSLATION retained_intron ENSMUSG00000075376 Rc3h2 ENSMUST00000125619 ENSMUSP00000145082 TRANSLATION nonsense_mediated_decay - - 5 478.0 11.0 7.699 0.0 56.4 0.0 -4,-6 0.033 3 -2.0 MINOR ENSMUSG00000075376 Rc3h2 ENSMUST00000100143 ENSMUSP00000097721 TRANSLATION protein_coding - CCDS38116.1 5 1187.0 11.0 7.699 16.5 56.4 0.0 -4,-6 1.0 10 18.0 PRINCIPAL:4 ENSMUSG00000075376 Rc3h2 ENSMUST00000124218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075376 Rc3h2 ENSMUST00000204962 - NO_TRANSLATION retained_intron ENSMUSG00000038312 Edem2 ENSMUST00000040833 ENSMUSP00000041202 TRANSLATION protein_coding - CCDS16953.1 1 577.0 0.0 9.7 12.3 385.4 0.0 3,-2 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000038312 Edem2 ENSMUST00000131350 - NO_TRANSLATION retained_intron ENSMUSG00000038312 Edem2 ENSMUST00000139868 - NO_TRANSLATION retained_intron ENSMUSG00000038312 Edem2 ENSMUST00000148571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026922 Agpat2 ENSMUST00000028286 ENSMUSP00000028286 TRANSLATION protein_coding - CCDS15809.1 1 278.0 2.0 6.08 3.5 117.1 0.0 4,-1 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000026922 Agpat2 ENSMUST00000131940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026922 Agpat2 ENSMUST00000140508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026922 Agpat2 ENSMUST00000140386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026922 Agpat2 ENSMUST00000154753 ENSMUSP00000115059 TRANSLATION protein_coding stop - 3 129.0 2.0 1.33 0.0 25.6 0.0 -4,-2 0.0005 - -2.0 MINOR ENSMUSG00000108827 Or4f6 ENSMUST00000207169 ENSMUSP00000146483 TRANSLATION protein_coding - CCDS16540.1 - 312.0 0.0 1.0 12.5 138.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108827 Or4f6 ENSMUST00000213559 ENSMUSP00000149701 TRANSLATION protein_coding - CCDS16540.1 5 312.0 0.0 1.0 12.5 138.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075210 Or9g3 ENSMUST00000099916 ENSMUSP00000097500 TRANSLATION protein_coding - CCDS16217.1 - 311.0 0.0 1.0 10.5 160.6 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075210 Or9g3 ENSMUST00000214958 ENSMUSP00000148952 TRANSLATION protein_coding - CCDS16217.1 3 311.0 0.0 1.0 10.5 160.6 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075210 Or9g3 ENSMUST00000214255 ENSMUSP00000149946 TRANSLATION protein_coding - CCDS16217.1 5 311.0 0.0 1.0 10.5 160.6 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027130 Slc12a6 ENSMUST00000137896 - NO_TRANSLATION retained_intron ENSMUSG00000027130 Slc12a6 ENSMUST00000156470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027130 Slc12a6 ENSMUST00000132752 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027130 Slc12a6 ENSMUST00000110991 ENSMUSP00000106619 TRANSLATION protein_coding - - 1 1128.0 0.0 18.132 0.0 350.2 8.0 -4,-6 0.067 11 4.5 MINOR ENSMUSG00000027130 Slc12a6 ENSMUST00000053666 ENSMUSP00000051490 TRANSLATION protein_coding - CCDS16552.1 1 1099.0 0.0 18.882 12.6 389.5 8.0 -4,-5 1.0 9 9.0 ALTERNATIVE:1 ENSMUSG00000027130 Slc12a6 ENSMUST00000028549 ENSMUSP00000028549 TRANSLATION protein_coding - CCDS16551.1 1 1150.0 0.0 18.882 10.1 389.5 8.0 -4,-6 0.8875 11 8.352 PRINCIPAL:3 ENSMUSG00000027130 Slc12a6 ENSMUST00000133840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027130 Slc12a6 ENSMUST00000110987 ENSMUSP00000106615 TRANSLATION protein_coding - - 1 946.0 0.0 15.0 0.0 286.2 8.0 -4,-6 0.0081 9 0.0 MINOR ENSMUSG00000099041 Gm28035 ENSMUST00000139454 ENSMUSP00000139038 TRANSLATION nonsense_mediated_decay,RT - CCDS15875.1 5 810.0 0.0 1.33 27.9 586.6 0.0 -4,-7 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000026836 Acvr1 ENSMUST00000056376 ENSMUSP00000056784 TRANSLATION protein_coding - CCDS16050.1 1 509.0 20.0 6.2 14.7 224.4 1.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000026836 Acvr1 ENSMUST00000112599 ENSMUSP00000108218 TRANSLATION protein_coding - CCDS16050.1 1 509.0 20.0 6.2 14.7 224.4 1.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000026836 Acvr1 ENSMUST00000090935 ENSMUSP00000088453 TRANSLATION protein_coding - CCDS16050.1 1 509.0 20.0 6.2 14.7 224.4 1.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000026836 Acvr1 ENSMUST00000112601 ENSMUSP00000108220 TRANSLATION protein_coding - CCDS16050.1 1 509.0 20.0 6.2 14.7 224.4 1.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000026836 Acvr1 ENSMUST00000126407 ENSMUSP00000120755 TRANSLATION protein_coding stop - 2 130.0 0.0 0.0 0.0 40.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026836 Acvr1 ENSMUST00000145495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061411 Nol4l ENSMUST00000109784 ENSMUSP00000105407 TRANSLATION protein_coding - CCDS50757.1 1 435.0 0.0 0.0 11.3 0.0 0.0 -4,-5 1.0 6 3.0 MINOR ENSMUSG00000061411 Nol4l ENSMUST00000132770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061411 Nol4l ENSMUST00000035346 ENSMUSP00000036571 TRANSLATION protein_coding - CCDS50758.1 1 679.0 3.0 0.0 5.5 0.0 0.0 -4,-6 0.7865 9 4.311 PRINCIPAL:1 ENSMUSG00000061411 Nol4l ENSMUST00000129385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061411 Nol4l ENSMUST00000137553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061411 Nol4l ENSMUST00000156786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027364 Usp50 ENSMUST00000130356 ENSMUSP00000116873 TRANSLATION protein_coding - - 5 329.0 4.0 3.3 0.0 166.5 0.0 -4,-5 0.0 - 10.666 MINOR ENSMUSG00000027364 Usp50 ENSMUST00000145194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027364 Usp50 ENSMUST00000028842 ENSMUSP00000028842 TRANSLATION protein_coding - CCDS16688.1 1 390.0 4.0 4.5 0.0 215.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027364 Usp50 ENSMUST00000136319 ENSMUSP00000121578 TRANSLATION nonsense_mediated_decay - - 2 271.0 4.0 3.0 0.0 120.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000027364 Usp50 ENSMUST00000151140 - NO_TRANSLATION retained_intron ENSMUSG00000026979 Psd4 ENSMUST00000102942 ENSMUSP00000100006 TRANSLATION protein_coding - CCDS15737.1 1 1005.0 0.0 7.05 0.1 225.8 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000026979 Psd4 ENSMUST00000131930 ENSMUSP00000142303 TRANSLATION protein_coding stop - 2 60.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026979 Psd4 ENSMUST00000132924 - NO_TRANSLATION retained_intron ENSMUSG00000026979 Psd4 ENSMUST00000140303 ENSMUSP00000142085 TRANSLATION nonsense_mediated_decay start - 5 32.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026979 Psd4 ENSMUST00000133730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026979 Psd4 ENSMUST00000140547 ENSMUSP00000141943 TRANSLATION protein_coding stop - 2 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026979 Psd4 ENSMUST00000166388 ENSMUSP00000132395 TRANSLATION protein_coding - CCDS15737.1 1 1005.0 0.0 7.05 0.1 225.8 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000026979 Psd4 ENSMUST00000127242 ENSMUSP00000141819 TRANSLATION protein_coding stop - 2 155.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026979 Psd4 ENSMUST00000056641 ENSMUSP00000062415 TRANSLATION protein_coding - CCDS15737.1 1 1005.0 0.0 7.05 0.1 225.8 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000026979 Psd4 ENSMUST00000142522 ENSMUSP00000141910 TRANSLATION protein_coding stop - 5 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027469 Tpx2 ENSMUST00000028969 ENSMUSP00000028969 TRANSLATION protein_coding - CCDS16900.1 1 745.0 0.0 0.69 1.5 281.8 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000027469 Tpx2 ENSMUST00000143740 - NO_TRANSLATION retained_intron ENSMUSG00000027469 Tpx2 ENSMUST00000144848 - NO_TRANSLATION retained_intron ENSMUSG00000027469 Tpx2 ENSMUST00000178997 ENSMUSP00000136457 TRANSLATION protein_coding - CCDS16900.1 1 745.0 0.0 0.69 1.5 281.8 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000027469 Tpx2 ENSMUST00000109816 ENSMUSP00000105441 TRANSLATION protein_coding - CCDS16900.1 1 745.0 0.0 0.69 1.5 281.8 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000027469 Tpx2 ENSMUST00000164120 ENSMUSP00000128888 TRANSLATION protein_coding - CCDS16900.1 5 745.0 0.0 0.69 1.5 281.8 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000027469 Tpx2 ENSMUST00000136407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059112 Or4c52 ENSMUST00000217065 ENSMUSP00000150959 TRANSLATION protein_coding - CCDS16402.1 5 306.0 0.0 1.0 7.7 142.1 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059112 Or4c52 ENSMUST00000111507 ENSMUSP00000107132 TRANSLATION protein_coding - CCDS16402.1 - 306.0 0.0 1.0 7.7 142.1 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059112 Or4c52 ENSMUST00000214382 ENSMUSP00000149887 TRANSLATION protein_coding - CCDS16402.1 5 306.0 0.0 1.0 7.7 142.1 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059112 Or4c52 ENSMUST00000216764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005102 Eif2ak4 ENSMUST00000110877 ENSMUSP00000106501 TRANSLATION protein_coding - - 1 653.0 5.0 5.388 0.0 168.7 0.0 -4,-2 0.0009 7 0.0 MINOR ENSMUSG00000005102 Eif2ak4 ENSMUST00000110870 ENSMUSP00000106494 TRANSLATION protein_coding - - 1 1370.0 16.0 13.216 0.0 260.1 0.0 -4,-5 0.03 15 7.41 MINOR ENSMUSG00000005102 Eif2ak4 ENSMUST00000110872 ENSMUSP00000106496 TRANSLATION protein_coding - - 1 1527.0 16.0 13.216 1.9 260.1 0.0 -4,-5 0.2184 17 8.41 MINOR ENSMUSG00000005102 Eif2ak4 ENSMUST00000102527 ENSMUSP00000099586 TRANSLATION protein_coding - CCDS50669.1 1 1536.0 16.0 14.016 1.0 260.1 0.0 -4,-7 0.1896 17 7.41 MINOR ENSMUSG00000005102 Eif2ak4 ENSMUST00000110874 ENSMUSP00000106498 TRANSLATION protein_coding - - 5 1570.0 16.0 15.016 0.0 287.6 0.0 -4,-5 0.0558 19 10.398 MINOR ENSMUSG00000005102 Eif2ak4 ENSMUST00000125281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005102 Eif2ak4 ENSMUST00000110869 ENSMUSP00000106493 TRANSLATION protein_coding - - 1 347.0 3.0 4.355 0.0 98.4 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000005102 Eif2ak4 ENSMUST00000005233 ENSMUSP00000005233 TRANSLATION protein_coding - CCDS16576.1 1 1648.0 16.0 17.346 0.0 336.6 0.0 -4,-2 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000027209 Fam227b ENSMUST00000178118 ENSMUSP00000136349 TRANSLATION protein_coding - CCDS50697.1 5 532.0 0.0 0.0 0.0 167.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027209 Fam227b ENSMUST00000156413 - NO_TRANSLATION retained_intron ENSMUSG00000027209 Fam227b ENSMUST00000110446 ENSMUSP00000106076 TRANSLATION protein_coding - CCDS50697.1 5 532.0 0.0 0.0 0.0 167.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044647 Csrnp3 ENSMUST00000129133 - NO_TRANSLATION retained_intron ENSMUSG00000044647 Csrnp3 ENSMUST00000112397 ENSMUSP00000135151 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000044647 Csrnp3 ENSMUST00000145598 ENSMUSP00000135605 TRANSLATION protein_coding - CCDS71060.1 1 585.0 8.0 0.0 13.6 345.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000044647 Csrnp3 ENSMUST00000176109 ENSMUSP00000135019 TRANSLATION protein_coding - CCDS71060.1 5 585.0 8.0 0.0 13.6 345.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000044647 Csrnp3 ENSMUST00000139896 - NO_TRANSLATION retained_intron ENSMUSG00000044647 Csrnp3 ENSMUST00000122912 ENSMUSP00000117533 TRANSLATION protein_coding - CCDS16074.2 1 597.0 8.0 0.0 4.9 345.5 0.0 -4,-5 0.4729 - 13.24 MINOR ENSMUSG00000044647 Csrnp3 ENSMUST00000112394 ENSMUSP00000108013 TRANSLATION protein_coding - CCDS71060.1 1 585.0 8.0 0.0 13.6 345.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000044647 Csrnp3 ENSMUST00000053910 ENSMUSP00000055719 TRANSLATION protein_coding - CCDS16074.2 1 597.0 8.0 0.0 4.9 345.5 0.0 -4,-5 0.4729 - 13.24 MINOR ENSMUSG00000075175 Or5t7 ENSMUST00000213198 ENSMUSP00000150094 TRANSLATION protein_coding - CCDS16264.1 5 310.0 0.0 1.0 3.3 163.5 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075175 Or5t7 ENSMUST00000099878 ENSMUSP00000097463 TRANSLATION protein_coding - CCDS16264.1 - 310.0 0.0 1.0 3.3 163.5 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000027276 Jag1 ENSMUST00000133640 - NO_TRANSLATION retained_intron ENSMUSG00000027276 Jag1 ENSMUST00000028735 ENSMUSP00000028735 TRANSLATION protein_coding - CCDS16797.1 1 1218.0 50.0 13.724 14.6 560.3 0.0 0,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000014852 Adamts13 ENSMUST00000147216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014852 Adamts13 ENSMUST00000102891 ENSMUSP00000099955 TRANSLATION protein_coding - CCDS15820.1 1 1426.0 15.0 12.87 0.1 134.2 0.0 -2,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000014852 Adamts13 ENSMUST00000014996 ENSMUSP00000014996 TRANSLATION protein_coding - CCDS71010.1 1 1037.0 15.0 12.87 0.0 106.9 0.0 -2,-4 0.2258 - 16.362 MINOR ENSMUSG00000074680 Defb26 ENSMUST00000099205 ENSMUSP00000096811 TRANSLATION protein_coding - CCDS16888.1 1 186.0 0.0 0.0 0.0 32.3 0.0 0,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074628 Tldc2 ENSMUST00000166140 ENSMUSP00000129278 TRANSLATION protein_coding - CCDS50782.1 5 212.0 0.0 4.35 11.5 126.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074628 Tldc2 ENSMUST00000099140 ENSMUSP00000096743 TRANSLATION protein_coding - - 5 198.0 0.0 4.35 0.0 126.6 0.0 -4,-5 0.0139 - 12.0 MINOR ENSMUSG00000056995 Or4p7 ENSMUST00000217346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056995 Or4p7 ENSMUST00000214040 ENSMUSP00000150036 TRANSLATION protein_coding - CCDS16332.1 5 323.0 0.0 1.0 3.8 166.6 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056995 Or4p7 ENSMUST00000219086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056995 Or4p7 ENSMUST00000075640 ENSMUSP00000075066 TRANSLATION protein_coding - CCDS16332.1 - 323.0 0.0 1.0 3.8 166.6 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000003604 Aven ENSMUST00000127894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003604 Aven ENSMUST00000003705 ENSMUSP00000003705 TRANSLATION protein_coding - CCDS16557.1 1 342.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.8686 7 0.0 PRINCIPAL:2 ENSMUSG00000003604 Aven ENSMUST00000099588 ENSMUSP00000097184 TRANSLATION protein_coding - CCDS50660.1 3 217.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.1892 7 0.0 ALTERNATIVE:2 ENSMUSG00000027339 Rassf2 ENSMUST00000155829 - NO_TRANSLATION retained_intron ENSMUSG00000027339 Rassf2 ENSMUST00000140791 ENSMUSP00000117619 TRANSLATION protein_coding stop - 5 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027339 Rassf2 ENSMUST00000139047 ENSMUSP00000120194 TRANSLATION protein_coding stop - 5 202.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027339 Rassf2 ENSMUST00000028814 ENSMUSP00000028814 TRANSLATION protein_coding - CCDS16768.1 1 326.0 0.0 1.16 16.5 107.0 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000027339 Rassf2 ENSMUST00000103182 ENSMUSP00000099471 TRANSLATION protein_coding - CCDS16768.1 5 326.0 0.0 1.16 16.5 107.0 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000016255 Tubb1 ENSMUST00000016399 ENSMUSP00000016399 TRANSLATION protein_coding - CCDS38359.1 1 451.0 16.0 3.5 14.1 375.3 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000001999 Blvra ENSMUST00000002064 ENSMUSP00000002064 TRANSLATION protein_coding - CCDS16692.1 1 295.0 22.0 6.0 10.3 248.8 0.0 -4,-7 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000001999 Blvra ENSMUST00000110389 ENSMUSP00000106019 TRANSLATION protein_coding - - 3 140.0 17.0 3.12 0.0 71.4 0.0 -4,-7 0.0 3 2.904 MINOR ENSMUSG00000001999 Blvra ENSMUST00000142861 - NO_TRANSLATION retained_intron ENSMUSG00000001999 Blvra ENSMUST00000135529 ENSMUSP00000118278 TRANSLATION protein_coding stop - 3 151.0 17.0 3.0 0.0 71.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000001999 Blvra ENSMUST00000142737 ENSMUSP00000116825 TRANSLATION protein_coding stop - 3 152.0 20.0 4.0 0.0 75.4 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000027360 Hdc ENSMUST00000028838 ENSMUSP00000028838 TRANSLATION protein_coding - CCDS16684.1 1 662.0 14.0 10.55 0.0 568.6 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000027360 Hdc ENSMUST00000124396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027360 Hdc ENSMUST00000132382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027360 Hdc ENSMUST00000148591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027360 Hdc ENSMUST00000138752 - NO_TRANSLATION retained_intron ENSMUSG00000027301 Oxt ENSMUST00000028764 ENSMUSP00000028764 TRANSLATION protein_coding - CCDS16745.1 1 125.0 13.0 1.7 12.9 132.6 0.0 4,-1 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000027322 Siglec1 ENSMUST00000110227 ENSMUSP00000105856 TRANSLATION protein_coding - - 1 1605.0 0.0 6.28 0.0 446.5 0.0 1,-3 0.2498 29 10.878 MINOR ENSMUSG00000027322 Siglec1 ENSMUST00000028794 ENSMUSP00000028794 TRANSLATION protein_coding - CCDS16754.2 1 1701.0 0.0 6.84 0.0 446.5 0.0 1,-3 1.0 33 12.0 PRINCIPAL:1 ENSMUSG00000027322 Siglec1 ENSMUST00000110226 ENSMUSP00000105855 TRANSLATION protein_coding - - 1 346.0 0.0 2.29 0.0 146.6 0.0 1,-3 0.0011 7 0.0 MINOR ENSMUSG00000054455 Vapb ENSMUST00000067530 ENSMUSP00000064699 TRANSLATION protein_coding - CCDS17146.1 1 243.0 0.0 3.5 31.3 110.3 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000054455 Vapb ENSMUST00000154306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078949 R3hdml ENSMUST00000109416 ENSMUSP00000105043 TRANSLATION protein_coding - CCDS38316.1 5 253.0 2.0 4.6 12.2 89.5 0.0 4,-1 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000038259 Gdf5 ENSMUST00000040162 ENSMUSP00000048079 TRANSLATION protein_coding - CCDS16958.1 1 495.0 0.0 0.6 10.4 161.3 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033368 Trim69 ENSMUST00000036089 ENSMUSP00000047627 TRANSLATION protein_coding - CCDS16655.1 1 500.0 12.0 4.93 6.2 171.8 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000033368 Trim69 ENSMUST00000143088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027581 Stmn3 ENSMUST00000103045 ENSMUSP00000099334 TRANSLATION protein_coding - CCDS17207.1 1 180.0 0.0 2.0 33.9 183.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000034154 Ino80 ENSMUST00000138707 - NO_TRANSLATION retained_intron ENSMUSG00000034154 Ino80 ENSMUST00000110808 ENSMUSP00000106431 TRANSLATION protein_coding - - 1 1141.0 3.0 13.52 0.0 233.7 0.0 -4,-5 0.0087 10 5.736 MINOR ENSMUSG00000034154 Ino80 ENSMUST00000049920 ENSMUSP00000051845 TRANSLATION protein_coding - CCDS16602.1 5 1559.0 3.0 16.27 17.8 296.4 0.0 -4,-5 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000027404 Snrpb ENSMUST00020183458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027404 Snrpb ENSMUST00000103199 ENSMUSP00000099488 TRANSLATION protein_coding - CCDS16735.1 1 231.0 5.0 2.0 6.2 70.9 0.0 -4,-6 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000027404 Snrpb ENSMUST00000147570 ENSMUSP00000143633 TRANSLATION nonsense_mediated_decay - - 5 70.0 2.0 1.2 0.0 53.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000027404 Snrpb ENSMUST00000150835 - NO_TRANSLATION retained_intron ENSMUSG00000026880 Stom ENSMUST00000202568 - NO_TRANSLATION retained_intron ENSMUSG00000026880 Stom ENSMUST00000028241 ENSMUSP00000028241 TRANSLATION protein_coding - CCDS15961.1 1 284.0 0.0 5.3 17.4 119.8 0.0 -4,-2 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000000194 Gpr107 ENSMUST00000172422 - NO_TRANSLATION retained_intron ENSMUSG00000000194 Gpr107 ENSMUST00000151991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000194 Gpr107 ENSMUST00000149622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000194 Gpr107 ENSMUST00000127872 - NO_TRANSLATION retained_intron ENSMUSG00000000194 Gpr107 ENSMUST00000169333 - NO_TRANSLATION retained_intron ENSMUSG00000000194 Gpr107 ENSMUST00000153032 - NO_TRANSLATION retained_intron ENSMUSG00000000194 Gpr107 ENSMUST00000133207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000194 Gpr107 ENSMUST00000194084 - NO_TRANSLATION retained_intron ENSMUSG00000000194 Gpr107 ENSMUST00000146747 - NO_TRANSLATION retained_intron ENSMUSG00000000194 Gpr107 ENSMUST00000056433 ENSMUSP00000056739 TRANSLATION protein_coding - CCDS15895.1 1 551.0 0.0 0.0 2.2 329.5 0.0 4,-1 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000000194 Gpr107 ENSMUST00000147099 - NO_TRANSLATION retained_intron ENSMUSG00000070880 Gad1 ENSMUST00000123330 ENSMUSP00000116301 TRANSLATION protein_coding stop - 2 249.0 3.0 3.2 0.0 106.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000070880 Gad1 ENSMUST00000155979 - NO_TRANSLATION retained_intron ENSMUSG00000070880 Gad1 ENSMUST00000130604 ENSMUSP00000117721 TRANSLATION nonsense_mediated_decay - CCDS84535.1 5 223.0 3.0 2.2 0.0 60.3 0.0 -4,-5 0.0037 4 -2.0 MINOR ENSMUSG00000070880 Gad1 ENSMUST00000130618 ENSMUSP00000117521 TRANSLATION protein_coding stop - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070880 Gad1 ENSMUST00000140478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070880 Gad1 ENSMUST00000094934 ENSMUSP00000092539 TRANSLATION protein_coding - CCDS16108.1 1 593.0 17.0 11.95 8.4 504.4 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000070880 Gad1 ENSMUST00000130998 ENSMUSP00000119379 TRANSLATION protein_coding - CCDS84535.1 1 223.0 3.0 2.2 0.0 60.3 0.0 -4,-5 0.0037 4 0.0 MINOR ENSMUSG00000070880 Gad1 ENSMUST00000148210 ENSMUSP00000119733 TRANSLATION protein_coding - CCDS84535.1 5 223.0 3.0 2.2 0.0 60.3 0.0 -4,-5 0.0037 4 0.0 MINOR ENSMUSG00000040154 Wfdc5 ENSMUST00000131974 ENSMUSP00000115448 TRANSLATION protein_coding start - 1 59.0 0.0 1.0 0.0 31.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040154 Wfdc5 ENSMUST00000045127 ENSMUSP00000035824 TRANSLATION protein_coding - CCDS17023.1 1 126.0 0.0 2.0 6.4 66.5 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000037110 Ralgapa2 ENSMUST00000148784 - NO_TRANSLATION retained_intron ENSMUSG00000037110 Ralgapa2 ENSMUST00000124583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037110 Ralgapa2 ENSMUST00000146024 - NO_TRANSLATION retained_intron ENSMUSG00000037110 Ralgapa2 ENSMUST00000146307 ENSMUSP00000114547 TRANSLATION nonsense_mediated_decay start - 2 834.0 0.0 2.08 0.0 122.7 0.0 -4,-7 0.0078 8 -2.0 MINOR ENSMUSG00000037110 Ralgapa2 ENSMUST00000228797 ENSMUSP00000153734 TRANSLATION protein_coding - - - 1957.0 0.0 2.83 0.3 153.9 0.0 -4,-6 0.3735 34 12.0 MINOR ENSMUSG00000037110 Ralgapa2 ENSMUST00000149499 ENSMUSP00000122017 TRANSLATION protein_coding start - 5 1567.0 0.0 2.83 0.0 153.9 0.0 -4,-5 0.2692 29 -2.0 MINOR ENSMUSG00000037110 Ralgapa2 ENSMUST00000135974 - NO_TRANSLATION retained_intron ENSMUSG00000037110 Ralgapa2 ENSMUST00000131824 ENSMUSP00000122039 TRANSLATION protein_coding - - 5 1872.0 0.0 2.83 7.3 153.9 0.0 -4,-6 1.0 33 14.0 PRINCIPAL:1 ENSMUSG00000037110 Ralgapa2 ENSMUST00000124709 - NO_TRANSLATION retained_intron ENSMUSG00000037110 Ralgapa2 ENSMUST00000109982 - NO_TRANSLATION retained_intron ENSMUSG00000037110 Ralgapa2 ENSMUST00000109986 ENSMUSP00000105613 TRANSLATION protein_coding - CCDS16831.2 5 1910.0 0.0 2.83 0.3 153.9 0.0 -4,-6 0.626 33 12.0 MINOR ENSMUSG00000040093 Bmf ENSMUST00000152123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040093 Bmf ENSMUST00000090219 ENSMUSP00000087686 TRANSLATION protein_coding - CCDS16578.1 1 271.0 0.0 1.8 0.3 223.6 0.0 -2,2 0.3945 1 12.0 MINOR ENSMUSG00000040093 Bmf ENSMUST00000154521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040093 Bmf ENSMUST00000138342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040093 Bmf ENSMUST00000110859 ENSMUSP00000106483 TRANSLATION protein_coding - CCDS79835.1 1 190.0 0.0 1.8 0.0 223.6 0.0 -4,-5 0.2961 1 12.0 MINOR ENSMUSG00000040093 Bmf ENSMUST00000125860 ENSMUSP00000159051 TRANSLATION protein_coding - - 2 185.0 0.0 1.8 12.5 223.4 0.0 -4,-5 1.0 1 14.988 PRINCIPAL:1 ENSMUSG00000040093 Bmf ENSMUST00000143583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040093 Bmf ENSMUST00000146962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039787 Cercam ENSMUST00000134152 ENSMUSP00000115902 TRANSLATION protein_coding start/stop - 3 159.0 0.0 1.33 0.0 0.0 0.0 4,-1 0.0027 - -2.0 MINOR ENSMUSG00000039787 Cercam ENSMUST00000154464 ENSMUSP00000119476 TRANSLATION protein_coding stop - 2 91.0 0.0 2.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000039787 Cercam ENSMUST00000155355 - NO_TRANSLATION retained_intron ENSMUSG00000039787 Cercam ENSMUST00000153863 - NO_TRANSLATION retained_intron ENSMUSG00000039787 Cercam ENSMUST00000047521 ENSMUSP00000041622 TRANSLATION protein_coding - CCDS15860.1 1 592.0 0.0 12.25 0.0 152.4 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000027338 Prnd ENSMUST00000110172 ENSMUSP00000105801 TRANSLATION protein_coding - CCDS16767.1 1 179.0 0.0 1.0 8.4 236.8 0.0 4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000027338 Prnd ENSMUST00000110169 ENSMUSP00000105798 TRANSLATION protein_coding - CCDS16767.1 1 179.0 0.0 1.0 8.4 236.8 0.0 4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000027338 Prnd ENSMUST00000110171 ENSMUSP00000105800 TRANSLATION protein_coding - CCDS16767.1 1 179.0 0.0 1.0 8.4 236.8 0.0 4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000027338 Prnd ENSMUST00000110170 ENSMUSP00000105799 TRANSLATION protein_coding - CCDS16767.1 1 179.0 0.0 1.0 8.4 236.8 0.0 4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000009563 Tor2a ENSMUST00000123624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009563 Tor2a ENSMUST00000156617 ENSMUSP00000122251 TRANSLATION nonsense_mediated_decay - - 2 73.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.004 - -2.0 MINOR ENSMUSG00000009563 Tor2a ENSMUST00000149720 - NO_TRANSLATION retained_intron ENSMUSG00000009563 Tor2a ENSMUST00000140999 ENSMUSP00000135278 TRANSLATION protein_coding start/stop - 5 268.0 12.0 5.33 0.0 118.5 0.0 3,-2 0.0021 2 -2.0 MINOR ENSMUSG00000009563 Tor2a ENSMUST00000177382 ENSMUSP00000134968 TRANSLATION protein_coding - - 5 101.0 3.0 1.1 0.0 80.4 0.0 3,-2 0.0004 - 0.336 MINOR ENSMUSG00000009563 Tor2a ENSMUST00000175763 ENSMUSP00000135701 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 0.0 1.0 0.0 0.0 3,-2 0.0214 - -2.0 MINOR ENSMUSG00000009563 Tor2a ENSMUST00000009707 ENSMUSP00000009707 TRANSLATION protein_coding - CCDS15929.1 1 321.0 12.0 6.42 9.0 174.8 0.0 3,-2 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000009563 Tor2a ENSMUST00000149987 - NO_TRANSLATION retained_intron ENSMUSG00000057735 Or4c99 ENSMUST00000075025 ENSMUSP00000074542 TRANSLATION protein_coding - - 5 303.0 0.0 1.0 9.9 163.9 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075202 Or5al1 ENSMUST00000099908 ENSMUSP00000097492 TRANSLATION protein_coding - CCDS16240.1 5 313.0 0.0 1.0 13.5 164.4 4.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075202 Or5al1 ENSMUST00000215624 ENSMUSP00000151053 TRANSLATION protein_coding - CCDS16240.1 - 313.0 0.0 1.0 13.5 164.4 4.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075190 Or8k22 ENSMUST00000213205 ENSMUSP00000150810 TRANSLATION protein_coding - CCDS16251.1 5 312.0 0.0 1.0 11.0 166.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075190 Or8k22 ENSMUST00000099895 ENSMUSP00000097480 TRANSLATION protein_coding - CCDS16251.1 - 312.0 0.0 1.0 11.0 166.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036587 Fut7 ENSMUST00000134259 ENSMUSP00000123526 TRANSLATION protein_coding stop - 1 103.0 0.0 1.0 0.0 43.9 2.0 -2,-5 0.0016 - -2.0 MINOR ENSMUSG00000036587 Fut7 ENSMUST00000100320 ENSMUSP00000097895 TRANSLATION protein_coding - CCDS50530.1 1 389.0 9.0 2.0 0.0 309.0 2.0 -4,-5 0.1636 - 18.0 MINOR ENSMUSG00000036587 Fut7 ENSMUST00000114278 ENSMUSP00000109917 TRANSLATION protein_coding - CCDS15772.1 1 342.0 9.0 2.0 4.0 309.0 2.0 -2,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000036587 Fut7 ENSMUST00000041654 ENSMUSP00000039985 TRANSLATION protein_coding - CCDS15772.1 5 342.0 9.0 2.0 4.0 309.0 2.0 -2,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000036587 Fut7 ENSMUST00000142156 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000827 Tpd52l2 ENSMUST00000108800 ENSMUSP00000104428 TRANSLATION protein_coding - CCDS71221.1 1 186.0 0.0 3.49 17.0 233.1 0.0 -4,-5 1.0 10 14.056 PRINCIPAL:1 ENSMUSG00000000827 Tpd52l2 ENSMUST00000149163 ENSMUSP00000117690 TRANSLATION protein_coding - CCDS17214.1 1 220.0 0.0 4.24 15.8 121.4 0.0 -4,-5 0.7478 11 9.26 MINOR ENSMUSG00000000827 Tpd52l2 ENSMUST00000183956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000827 Tpd52l2 ENSMUST00000130261 - NO_TRANSLATION retained_intron ENSMUSG00000000827 Tpd52l2 ENSMUST00000184849 ENSMUSP00000138837 TRANSLATION protein_coding stop - 3 169.0 0.0 4.24 0.0 121.2 0.0 -4,-5 0.0082 9 -2.0 MINOR ENSMUSG00000000827 Tpd52l2 ENSMUST00000184588 ENSMUSP00000139238 TRANSLATION nonsense_mediated_decay - - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000000827 Tpd52l2 ENSMUST00000000844 ENSMUSP00000000844 TRANSLATION protein_coding - CCDS71219.1 1 206.0 0.0 4.24 17.2 122.1 0.0 -4,-5 0.7614 10 9.604 MINOR ENSMUSG00000000827 Tpd52l2 ENSMUST00000155589 - NO_TRANSLATION retained_intron ENSMUSG00000000827 Tpd52l2 ENSMUST00000129390 - NO_TRANSLATION retained_intron ENSMUSG00000000827 Tpd52l2 ENSMUST00000108799 ENSMUSP00000104427 TRANSLATION protein_coding - - 5 229.0 0.0 4.438 16.8 121.4 0.0 -4,-5 0.6399 10 9.9 MINOR ENSMUSG00000000827 Tpd52l2 ENSMUST00000069712 ENSMUSP00000068888 TRANSLATION protein_coding - CCDS71220.1 1 200.0 0.0 3.49 12.8 226.0 0.0 -4,-5 0.8696 11 12.59 MINOR ENSMUSG00000000827 Tpd52l2 ENSMUST00000141825 ENSMUSP00000123627 TRANSLATION protein_coding start/stop - 5 161.0 0.0 3.028 0.0 182.2 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000026765 Lypd6b ENSMUST00000129867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026765 Lypd6b ENSMUST00000028103 ENSMUSP00000028103 TRANSLATION protein_coding - - 1 172.0 0.0 3.0 10.0 183.2 0.0 1,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000026765 Lypd6b ENSMUST00000153422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026811 St6galnac6 ENSMUST00000095044 ENSMUSP00000092654 TRANSLATION protein_coding - CCDS15923.1 1 333.0 10.0 5.8575 8.8 120.4 1.0 -4,-7 0.7271 4 20.556 MINOR ENSMUSG00000026811 St6galnac6 ENSMUST00000129165 ENSMUSP00000121833 TRANSLATION protein_coding stop - 2 39.0 0.0 0.0 0.0 0.0 1.0 -2,-5 0.0007 - -2.0 MINOR ENSMUSG00000026811 St6galnac6 ENSMUST00000183538 ENSMUSP00000138916 TRANSLATION nonsense_mediated_decay - - 1 235.0 5.0 3.3155 0.0 69.3 1.0 -4,-7 0.0009 3 -2.0 MINOR ENSMUSG00000026811 St6galnac6 ENSMUST00000143625 ENSMUSP00000141437 TRANSLATION protein_coding stop - 2 41.0 3.0 0.8 0.0 24.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026811 St6galnac6 ENSMUST00000113290 ENSMUSP00000108915 TRANSLATION protein_coding - CCDS38105.1 5 299.0 10.0 5.8575 13.2 120.4 1.0 -2,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000026811 St6galnac6 ENSMUST00000095045 ENSMUSP00000092655 TRANSLATION protein_coding - CCDS38105.1 1 299.0 10.0 5.8575 13.2 120.4 1.0 -2,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000026811 St6galnac6 ENSMUST00000081879 ENSMUSP00000080555 TRANSLATION protein_coding - - 1 335.0 10.0 5.8575 0.0 120.4 1.0 -4,-5 0.0309 4 18.0 MINOR ENSMUSG00000026811 St6galnac6 ENSMUST00000126636 ENSMUSP00000141412 TRANSLATION protein_coding stop - 2 28.0 0.0 0.83 0.0 31.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026811 St6galnac6 ENSMUST00000131229 ENSMUSP00000115430 TRANSLATION protein_coding - CCDS15922.1 2 313.0 10.0 5.8575 0.0 120.4 1.0 -4,-7 0.14 4 18.0 MINOR ENSMUSG00000026811 St6galnac6 ENSMUST00000140983 ENSMUSP00000114934 TRANSLATION protein_coding stop - 5 229.0 8.0 4.5275 0.0 100.3 1.0 -2,-5 0.0042 3 -2.0 MINOR ENSMUSG00000026811 St6galnac6 ENSMUST00000128811 ENSMUSP00000118893 TRANSLATION protein_coding stop - 2 108.0 5.0 1.8175 0.0 35.5 1.0 -2,-5 0.0015 - -2.0 MINOR ENSMUSG00000026811 St6galnac6 ENSMUST00000072111 ENSMUSP00000071983 TRANSLATION protein_coding - CCDS15923.1 5 333.0 10.0 5.8575 8.8 120.4 1.0 -4,-7 0.7271 4 20.556 MINOR ENSMUSG00000026811 St6galnac6 ENSMUST00000149220 - NO_TRANSLATION retained_intron ENSMUSG00000082079 Dnmt3c ENSMUST00000119996 ENSMUSP00000153622 TRANSLATION protein_coding - - - 740.0 12.0 11.73 0.0 0.0 0.0 -4,-5 0.6656 - 12.0 PRINCIPAL:1 ENSMUSG00000038369 Ncoa6 ENSMUST00000109669 ENSMUSP00000105294 TRANSLATION protein_coding - - 1 519.0 0.0 1.9 0.0 0.0 0.0 -4,-5 0.0678 2 6.0 ALTERNATIVE:2 ENSMUSG00000038369 Ncoa6 ENSMUST00000109670 ENSMUSP00000105295 TRANSLATION protein_coding - CCDS38295.1 5 2069.0 0.0 1.9 0.0 0.0 0.0 -4,-5 1.0 15 6.0 PRINCIPAL:2 ENSMUSG00000038369 Ncoa6 ENSMUST00000134508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038369 Ncoa6 ENSMUST00000141928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038369 Ncoa6 ENSMUST00000143909 - NO_TRANSLATION retained_intron ENSMUSG00000038369 Ncoa6 ENSMUST00000043126 ENSMUSP00000045386 TRANSLATION protein_coding - CCDS38295.1 1 2069.0 0.0 1.9 0.0 0.0 0.0 -4,-5 1.0 15 6.0 PRINCIPAL:2 ENSMUSG00000038369 Ncoa6 ENSMUST00000123293 ENSMUSP00000118113 TRANSLATION protein_coding stop - 1 1516.0 0.0 1.9 0.0 0.0 0.0 -4,-5 0.2476 9 -2.0 MINOR ENSMUSG00000038369 Ncoa6 ENSMUST00000146942 - NO_TRANSLATION retained_intron ENSMUSG00000027272 Ubr1 ENSMUST00000028728 ENSMUSP00000028728 TRANSLATION protein_coding - CCDS16628.1 1 1757.0 15.0 1.95 8.2 150.1 0.0 -4,-5 1.0 30 21.0 PRINCIPAL:1 ENSMUSG00000027272 Ubr1 ENSMUST00000154023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027272 Ubr1 ENSMUST00000138824 - NO_TRANSLATION retained_intron ENSMUSG00000027272 Ubr1 ENSMUST00000135891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027272 Ubr1 ENSMUST00000133408 - NO_TRANSLATION retained_intron ENSMUSG00000027272 Ubr1 ENSMUST00000129790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027272 Ubr1 ENSMUST00000153868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027498 Cstf1 ENSMUST00000116375 ENSMUSP00000112076 TRANSLATION protein_coding - CCDS17130.1 1 431.0 0.0 4.365 32.9 179.0 0.0 -4,-6 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000027498 Cstf1 ENSMUST00000151511 ENSMUSP00000121178 TRANSLATION protein_coding stop - 2 155.0 0.0 1.6 0.0 94.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000027274 Mkks ENSMUST00000110089 ENSMUSP00000105716 TRANSLATION protein_coding - CCDS16794.1 1 570.0 0.0 1.4 14.7 355.2 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027274 Mkks ENSMUST00000028730 ENSMUSP00000028730 TRANSLATION protein_coding - CCDS16794.1 1 570.0 0.0 1.4 14.7 355.2 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027274 Mkks ENSMUST00000144275 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027478 Dnmt3b ENSMUST00000109773 ENSMUSP00000105395 TRANSLATION protein_coding - CCDS16913.1 1 839.0 12.0 13.4 0.0 44.9 0.0 -4,-5 0.3166 - 11.502 ALTERNATIVE:2 ENSMUSG00000027478 Dnmt3b ENSMUST00000072997 ENSMUSP00000072761 TRANSLATION protein_coding - CCDS16914.1 1 859.0 12.0 13.4 0.4 44.9 0.0 -4,-5 0.947 - 11.502 ALTERNATIVE:2 ENSMUSG00000027478 Dnmt3b ENSMUST00000140811 - NO_TRANSLATION retained_intron ENSMUSG00000027478 Dnmt3b ENSMUST00000103150 ENSMUSP00000099439 TRANSLATION protein_coding - CCDS16916.1 1 776.0 12.0 11.65 0.3 44.9 0.0 -4,-5 0.0889 - 7.998 MINOR ENSMUSG00000027478 Dnmt3b ENSMUST00000132132 - NO_TRANSLATION retained_intron ENSMUSG00000027478 Dnmt3b ENSMUST00000081628 ENSMUSP00000080334 TRANSLATION protein_coding - CCDS16913.1 1 839.0 12.0 13.4 0.0 44.9 0.0 -4,-5 0.3166 - 11.502 ALTERNATIVE:2 ENSMUSG00000027478 Dnmt3b ENSMUST00000056495 ENSMUSP00000051830 TRANSLATION protein_coding - CCDS50759.1 5 860.0 12.0 13.65 0.4 44.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000027478 Dnmt3b ENSMUST00000109774 ENSMUSP00000105396 TRANSLATION protein_coding - CCDS16914.1 1 859.0 12.0 13.4 0.4 44.9 0.0 -4,-5 0.947 - 11.502 ALTERNATIVE:2 ENSMUSG00000027478 Dnmt3b ENSMUST00000103151 ENSMUSP00000099440 TRANSLATION protein_coding - CCDS16916.1 1 776.0 12.0 11.65 0.3 44.9 0.0 -4,-5 0.0889 - 7.998 MINOR ENSMUSG00000027478 Dnmt3b ENSMUST00000088976 ENSMUSP00000086370 TRANSLATION protein_coding - CCDS16915.1 1 796.0 12.0 11.65 0.3 44.9 0.0 -4,-5 0.0929 - 7.998 MINOR ENSMUSG00000027478 Dnmt3b ENSMUST00000109771 ENSMUSP00000105393 TRANSLATION protein_coding - CCDS50759.1 1 860.0 12.0 13.65 0.4 44.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000027478 Dnmt3b ENSMUST00000109772 ENSMUSP00000105394 TRANSLATION protein_coding - CCDS16915.1 1 796.0 12.0 11.65 0.3 44.9 0.0 -4,-5 0.0929 - 7.998 MINOR ENSMUSG00000075211 Or9g4 ENSMUST00000216084 ENSMUSP00000149868 TRANSLATION protein_coding - CCDS38169.1 5 312.0 0.0 1.0 15.4 172.4 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075211 Or9g4 ENSMUST00000099917 ENSMUSP00000097501 TRANSLATION protein_coding - CCDS38169.1 2 312.0 0.0 1.0 15.4 172.4 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039501 Znfx1 ENSMUST00000155281 ENSMUSP00000121750 TRANSLATION protein_coding stop - 1 869.0 9.0 0.32 0.0 54.4 0.0 -4,-6 0.0084 14 -2.0 MINOR ENSMUSG00000039501 Znfx1 ENSMUST00000048988 ENSMUSP00000049404 TRANSLATION protein_coding - CCDS38337.1 1 1909.0 9.0 2.22 5.3 249.4 0.0 -4,-6 1.0 32 20.0 PRINCIPAL:1 ENSMUSG00000039501 Znfx1 ENSMUST00000067584 ENSMUSP00000072867 TRANSLATION protein_coding - CCDS71198.1 1 1045.0 0.0 1.9 0.0 196.2 0.0 1,-2 0.0629 18 7.944 MINOR ENSMUSG00000039501 Znfx1 ENSMUST00000128676 ENSMUSP00000121598 TRANSLATION protein_coding stop - 1 840.0 9.0 0.32 0.0 54.3 0.0 -4,-6 0.0067 14 -2.0 MINOR ENSMUSG00000039501 Znfx1 ENSMUST00000135967 - NO_TRANSLATION retained_intron ENSMUSG00000075271 Ift70a1 ENSMUST00000099994 ENSMUSP00000097574 TRANSLATION protein_coding - CCDS16154.1 - 664.0 0.0 1.0 12.5 15.0 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000027132 Katnbl1 ENSMUST00000151257 - NO_TRANSLATION retained_intron ENSMUSG00000027132 Katnbl1 ENSMUST00000028552 ENSMUSP00000028552 TRANSLATION protein_coding - CCDS16554.1 1 299.0 0.0 1.4 14.7 141.9 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026832 Cytip ENSMUST00000146545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026832 Cytip ENSMUST00000148764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026832 Cytip ENSMUST00000153052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026832 Cytip ENSMUST00000131443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026832 Cytip ENSMUST00000151785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026832 Cytip ENSMUST00000028175 ENSMUSP00000028175 TRANSLATION protein_coding - CCDS16048.1 1 359.0 0.0 4.15 14.5 47.9 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000026832 Cytip ENSMUST00000151169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026832 Cytip ENSMUST00000144117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027304 Rtf1 ENSMUST00000028767 ENSMUSP00000028767 TRANSLATION protein_coding - CCDS50673.1 1 715.0 0.0 6.5 11.6 126.3 0.0 1,-3 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000027304 Rtf1 ENSMUST00000126984 - NO_TRANSLATION retained_intron ENSMUSG00000027304 Rtf1 ENSMUST00000136321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027304 Rtf1 ENSMUST00000149904 - NO_TRANSLATION retained_intron ENSMUSG00000057447 Or4c11c ENSMUST00000215929 ENSMUSP00000150206 TRANSLATION protein_coding - CCDS16351.1 3 307.0 0.0 1.0 12.5 150.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057447 Or4c11c ENSMUST00000076438 ENSMUSP00000075769 TRANSLATION protein_coding - CCDS16351.1 - 307.0 0.0 1.0 12.5 150.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026932 Nacc2 ENSMUST00000152133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026932 Nacc2 ENSMUST00000140993 ENSMUSP00000120198 TRANSLATION protein_coding stop - 2 85.0 0.0 1.75 0.0 55.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026932 Nacc2 ENSMUST00000128674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026932 Nacc2 ENSMUST00000126921 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026932 Nacc2 ENSMUST00000133212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026932 Nacc2 ENSMUST00000028300 ENSMUSP00000028300 TRANSLATION protein_coding - CCDS15796.1 1 586.0 0.0 5.7 10.8 118.6 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000026932 Nacc2 ENSMUST00000149408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026932 Nacc2 ENSMUST00000114159 ENSMUSP00000109796 TRANSLATION protein_coding - CCDS15796.1 1 586.0 0.0 5.7 10.8 118.6 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000004105 Angptl2 ENSMUST00000004208 ENSMUSP00000004208 TRANSLATION protein_coding - CCDS15940.1 1 493.0 9.0 3.0 11.0 249.2 0.0 3,-2 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000004105 Angptl2 ENSMUST00000139148 - NO_TRANSLATION retained_intron ENSMUSG00000004105 Angptl2 ENSMUST00000143252 - NO_TRANSLATION retained_intron ENSMUSG00000004105 Angptl2 ENSMUST00000193373 ENSMUSP00000142084 TRANSLATION protein_coding stop - 3 112.0 1.0 1.0 0.0 68.4 0.0 3,-2 0.002 3 -2.0 MINOR ENSMUSG00000026925 Inpp5e ENSMUST00000144011 ENSMUSP00000123272 TRANSLATION protein_coding start/stop - 5 206.0 0.0 5.83 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026925 Inpp5e ENSMUST00000028291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026925 Inpp5e ENSMUST00000131109 ENSMUSP00000118739 TRANSLATION protein_coding start - 3 126.0 0.0 2.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026925 Inpp5e ENSMUST00000145701 ENSMUSP00000119485 TRANSLATION protein_coding - CCDS15805.1 1 647.0 0.0 10.33 2.5 34.7 0.0 -4,-6 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000026925 Inpp5e ENSMUST00000114090 ENSMUSP00000109724 TRANSLATION protein_coding - CCDS71007.1 1 605.0 0.0 9.08 0.0 34.7 0.0 -4,-6 0.073 12 9.498 MINOR ENSMUSG00000026925 Inpp5e ENSMUST00000150907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026925 Inpp5e ENSMUST00000146061 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050114 Prdx6b ENSMUST00000057072 ENSMUSP00000133276 TRANSLATION protein_coding - CCDS38158.1 - 224.0 0.0 1.0 31.9 136.9 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000027219 Slc28a2 ENSMUST00000139850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027219 Slc28a2 ENSMUST00000028652 ENSMUSP00000028652 TRANSLATION protein_coding - CCDS16663.1 1 660.0 0.0 9.29 6.7 363.2 12.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000027219 Slc28a2 ENSMUST00000153848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027219 Slc28a2 ENSMUST00000110524 ENSMUSP00000106153 TRANSLATION protein_coding - CCDS16663.1 1 660.0 0.0 9.29 6.7 363.2 12.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000027219 Slc28a2 ENSMUST00000110525 ENSMUSP00000106154 TRANSLATION protein_coding - CCDS16663.1 1 660.0 0.0 9.29 6.7 363.2 12.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000070953 Rabepk ENSMUST00000140663 ENSMUSP00000122119 TRANSLATION nonsense_mediated_decay - - 2 52.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000070953 Rabepk ENSMUST00000113086 ENSMUSP00000108709 TRANSLATION protein_coding - - 5 321.0 0.0 2.948 5.2 106.1 0.0 -4,-5 0.2699 5 10.026 MINOR ENSMUSG00000070953 Rabepk ENSMUST00000118108 ENSMUSP00000113099 TRANSLATION protein_coding - - 5 372.0 0.0 3.723 10.3 135.8 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000070953 Rabepk ENSMUST00000141099 ENSMUSP00000120887 TRANSLATION nonsense_mediated_decay - - 3 76.0 0.0 0.2 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000070953 Rabepk ENSMUST00000144113 - NO_TRANSLATION retained_intron ENSMUSG00000070953 Rabepk ENSMUST00000047963 ENSMUSP00000037746 TRANSLATION nonsense_mediated_decay start - 3 64.0 0.0 0.65 0.0 42.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000070953 Rabepk ENSMUST00000145903 ENSMUSP00000122360 TRANSLATION protein_coding - CCDS15951.1 1 380.0 0.0 3.723 1.0 135.8 0.0 -4,-6 0.4792 7 12.0 MINOR ENSMUSG00000058740 Kcnt1 ENSMUST00000138568 - NO_TRANSLATION retained_intron ENSMUSG00000058740 Kcnt1 ENSMUST00000198204 ENSMUSP00000142870 TRANSLATION protein_coding - - 5 1183.0 0.0 20.1 1.1 142.3 5.0 -4,-5 0.3245 14 8.037 ALTERNATIVE:2 ENSMUSG00000058740 Kcnt1 ENSMUST00000199269 - NO_TRANSLATION retained_intron ENSMUSG00000058740 Kcnt1 ENSMUST00000145544 - NO_TRANSLATION retained_intron ENSMUSG00000058740 Kcnt1 ENSMUST00000037580 ENSMUSP00000039058 TRANSLATION protein_coding - CCDS15794.1 1 1238.0 0.0 20.1 3.7 142.3 5.0 -4,-5 1.0 16 9.0 PRINCIPAL:4 ENSMUSG00000058740 Kcnt1 ENSMUST00000131529 - NO_TRANSLATION retained_intron ENSMUSG00000058740 Kcnt1 ENSMUST00000197917 ENSMUSP00000143106 TRANSLATION protein_coding - - 5 1236.0 0.0 20.1 3.7 142.3 5.0 -4,-5 0.8418 16 9.0 ALTERNATIVE:2 ENSMUSG00000058740 Kcnt1 ENSMUST00000171268 ENSMUSP00000132212 TRANSLATION protein_coding - CCDS50537.1 1 1218.0 0.0 20.1 1.4 142.3 5.0 -4,-5 0.6004 14 8.148 ALTERNATIVE:2 ENSMUSG00000058740 Kcnt1 ENSMUST00000150788 - NO_TRANSLATION retained_intron ENSMUSG00000058740 Kcnt1 ENSMUST00000153001 ENSMUSP00000142532 TRANSLATION protein_coding start/stop - 5 330.0 0.0 7.1025 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000058740 Kcnt1 ENSMUST00000114176 ENSMUSP00000109813 TRANSLATION protein_coding - - 5 1217.0 0.0 20.1 1.5 142.3 5.0 -4,-5 0.4455 16 8.185 ALTERNATIVE:2 ENSMUSG00000058740 Kcnt1 ENSMUST00000200434 ENSMUSP00000143482 TRANSLATION protein_coding - - 5 1202.0 0.0 20.1 2.5 142.3 5.0 -4,-5 0.6219 14 8.556 ALTERNATIVE:2 ENSMUSG00000058740 Kcnt1 ENSMUST00000114170 - NO_TRANSLATION retained_intron ENSMUSG00000058740 Kcnt1 ENSMUST00000114172 ENSMUSP00000109809 TRANSLATION protein_coding - CCDS79757.1 1 1224.0 0.0 20.1 0.0 142.3 5.0 -4,-7 0.4833 16 8.0 ALTERNATIVE:2 ENSMUSG00000058740 Kcnt1 ENSMUST00000128502 ENSMUSP00000143472 TRANSLATION nonsense_mediated_decay start - 5 36.0 0.0 1.0 0.0 41.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000059588 Calcrl ENSMUST00000151295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059588 Calcrl ENSMUST00000074262 ENSMUSP00000073875 TRANSLATION protein_coding - CCDS16184.1 1 463.0 0.0 9.0 15.8 332.7 0.0 3,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000079421 4930402F06Rik ENSMUST00000113010 ENSMUSP00000108633 TRANSLATION protein_coding - CCDS38108.1 1 332.0 4.0 2.1 1.1 403.9 0.0 4,-1 1.0 - 11.0 PRINCIPAL:2 ENSMUSG00000079421 4930402F06Rik ENSMUST00000113009 ENSMUSP00000108632 TRANSLATION protein_coding - CCDS71041.1 1 301.0 4.0 2.1 0.3 403.9 0.0 -4,-5 0.2741 - 10.0 ALTERNATIVE:2 ENSMUSG00000036327 Qsox2 ENSMUST00000036187 ENSMUSP00000037128 TRANSLATION protein_coding - CCDS15798.1 5 639.0 27.0 8.618 0.0 144.8 0.0 -3,1 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000036327 Qsox2 ENSMUST00000091263 ENSMUSP00000088807 TRANSLATION protein_coding - - 1 527.0 23.0 6.6 0.1 94.0 0.0 -4,-5 0.0006 7 8.25 MINOR ENSMUSG00000068819 Or5w11 ENSMUST00000213302 ENSMUSP00000150754 TRANSLATION protein_coding - CCDS16298.1 5 309.0 0.0 2.0 13.4 159.0 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000068819 Or5w11 ENSMUST00000090712 ENSMUSP00000088214 TRANSLATION protein_coding - CCDS16298.1 - 309.0 0.0 2.0 13.4 159.0 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000068819 Or5w11 ENSMUST00000216756 ENSMUSP00000148881 TRANSLATION protein_coding - - 3 193.0 0.0 1.0 0.7 100.9 4.0 -4,-7 0.0162 - 5.514 MINOR ENSMUSG00000086598 Btbd18 ENSMUST00000133437 ENSMUSP00000142247 TRANSLATION protein_coding - CCDS79815.1 3 723.0 0.0 1.0 0.1 64.2 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000086598 Btbd18 ENSMUST00000144684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006800 Sulf2 ENSMUST00000109249 ENSMUSP00000104872 TRANSLATION protein_coding - CCDS17086.1 1 875.0 5.0 5.575 7.0 330.1 0.0 4,-1 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000006800 Sulf2 ENSMUST00000143996 - NO_TRANSLATION retained_intron ENSMUSG00000006800 Sulf2 ENSMUST00000133395 ENSMUSP00000154724 TRANSLATION protein_coding stop - 3 56.0 2.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000006800 Sulf2 ENSMUST00000139266 ENSMUSP00000154315 TRANSLATION protein_coding stop - 5 225.0 3.0 2.13 0.0 80.5 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000006800 Sulf2 ENSMUST00000125503 - NO_TRANSLATION retained_intron ENSMUSG00000006800 Sulf2 ENSMUST00000088086 ENSMUSP00000085405 TRANSLATION protein_coding - CCDS17086.1 1 875.0 5.0 5.575 7.0 330.1 0.0 4,-1 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000006800 Sulf2 ENSMUST00000146497 ENSMUSP00000154557 TRANSLATION protein_coding - CCDS17086.1 5 875.0 5.0 5.575 7.0 330.1 0.0 4,-1 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000042604 Kcna4 ENSMUST00000173191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042604 Kcna4 ENSMUST00000037012 ENSMUSP00000037958 TRANSLATION protein_coding - CCDS16505.1 1 654.0 0.0 0.8 10.7 396.1 0.0 -4,-6 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000027593 Raly ENSMUST00000151578 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027593 Raly ENSMUST00000140713 ENSMUSP00000119126 TRANSLATION protein_coding stop - 5 298.0 0.0 2.765 0.0 47.8 0.0 -4,-6 0.0296 11 -2.0 MINOR ENSMUSG00000027593 Raly ENSMUST00000145202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027593 Raly ENSMUST00000152038 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027593 Raly ENSMUST00000116389 ENSMUSP00000112090 TRANSLATION protein_coding - CCDS50767.1 5 312.0 0.0 2.765 4.0 47.8 0.0 -4,-6 1.0 11 10.0 PRINCIPAL:4 ENSMUSG00000027593 Raly ENSMUST00000058089 ENSMUSP00000058105 TRANSLATION protein_coding - CCDS16939.1 1 296.0 0.0 2.765 3.1 47.8 0.0 -4,-6 0.7939 11 9.4 ALTERNATIVE:2 ENSMUSG00000027593 Raly ENSMUST00000109701 ENSMUSP00000105323 TRANSLATION protein_coding - CCDS16939.1 1 296.0 0.0 2.765 3.1 47.8 0.0 -4,-6 0.7939 11 9.4 ALTERNATIVE:2 ENSMUSG00000027593 Raly ENSMUST00000125872 ENSMUSP00000119108 TRANSLATION protein_coding stop - 3 141.0 0.0 1.6 0.0 47.8 0.0 -4,-6 0.0095 8 -2.0 MINOR ENSMUSG00000027593 Raly ENSMUST00000029120 ENSMUSP00000029120 TRANSLATION protein_coding - CCDS50767.1 5 312.0 0.0 2.765 4.0 47.8 0.0 -4,-6 1.0 11 10.0 PRINCIPAL:4 ENSMUSG00000027593 Raly ENSMUST00000129137 ENSMUSP00000114185 TRANSLATION protein_coding stop - 5 211.0 0.0 2.765 0.0 47.8 0.0 -4,-6 0.0099 11 -2.0 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000136085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075415 Fnbp1 ENSMUST00000113552 ENSMUSP00000109181 TRANSLATION protein_coding - CCDS15894.1 1 338.0 0.0 7.49 0.0 68.5 0.0 -4,-5 0.0133 11 1.0 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000073879 ENSMUSP00000109188 TRANSLATION protein_coding - - 5 554.0 0.0 11.49 8.7 103.0 0.0 -4,-5 0.7833 17 10.118 ALTERNATIVE:1 ENSMUSG00000075415 Fnbp1 ENSMUST00000075326 ENSMUSP00000074796 TRANSLATION protein_coding - - 5 586.0 0.0 11.49 3.5 103.0 0.0 -4,-5 0.2874 18 8.687 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000149196 ENSMUSP00000121282 TRANSLATION protein_coding stop - 3 208.0 0.0 5.06 0.0 68.5 0.0 -4,-5 0.0009 5 -2.0 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000113555 ENSMUSP00000109184 TRANSLATION protein_coding - - 5 591.0 0.0 11.49 3.5 103.0 0.0 -4,-5 0.2882 18 8.687 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000138581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075415 Fnbp1 ENSMUST00000113560 ENSMUSP00000109190 TRANSLATION protein_coding - CCDS50561.1 1 616.0 0.0 11.49 6.9 103.0 0.0 -4,-5 0.7756 18 9.623 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000113564 ENSMUSP00000109194 TRANSLATION protein_coding - CCDS57165.1 1 551.0 0.0 11.49 11.9 103.0 0.0 -4,-5 0.9986 17 11.0 ALTERNATIVE:1 ENSMUSG00000075415 Fnbp1 ENSMUST00000100207 ENSMUSP00000097781 TRANSLATION protein_coding - - 5 559.0 0.0 11.49 6.5 103.0 0.0 -4,-5 0.7011 17 9.515 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000128500 ENSMUSP00000115013 TRANSLATION protein_coding start - 5 388.0 0.0 8.31 0.0 98.8 0.0 -4,-5 0.0097 11 -2.0 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000113562 ENSMUSP00000109192 TRANSLATION protein_coding - CCDS38097.1 1 550.0 0.0 11.49 11.9 103.0 0.0 -4,-5 1.0 17 11.0 PRINCIPAL:4 ENSMUSG00000075415 Fnbp1 ENSMUST00000100208 ENSMUSP00000097782 TRANSLATION protein_coding - - 5 615.0 0.0 11.49 5.8 103.0 0.0 -4,-5 0.6096 18 9.32 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000136181 ENSMUSP00000120580 TRANSLATION protein_coding stop - 5 160.0 0.0 4.14 0.0 68.5 0.0 -4,-5 0.0009 5 -2.0 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000128431 ENSMUSP00000141681 TRANSLATION protein_coding start/stop - 5 355.0 0.0 4.33 0.0 23.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000075415 Fnbp1 ENSMUST00000113559 ENSMUSP00000109189 TRANSLATION protein_coding - CCDS50560.1 1 522.0 0.0 9.6 0.7 34.5 0.0 -4,-5 0.0763 15 3.22 MINOR ENSMUSG00000075117 Or4p23 ENSMUST00000215179 ENSMUSP00000150548 TRANSLATION protein_coding - CCDS16346.1 5 308.0 0.0 1.0 7.8 167.8 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075117 Or4p23 ENSMUST00000099814 ENSMUSP00000097402 TRANSLATION protein_coding - CCDS16346.1 - 308.0 0.0 1.0 7.8 167.8 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075117 Or4p23 ENSMUST00000215529 ENSMUSP00000149844 TRANSLATION protein_coding - CCDS16346.1 3 308.0 0.0 1.0 7.8 167.8 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070943 Or1ak2 ENSMUST00000095021 ENSMUSP00000092631 TRANSLATION protein_coding - CCDS15989.1 - 315.0 0.0 1.0 3.8 177.7 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000047617 Paxx ENSMUST00000125710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047617 Paxx ENSMUST00000132561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047617 Paxx ENSMUST00000123986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047617 Paxx ENSMUST00000132596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047617 Paxx ENSMUST00000138079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047617 Paxx ENSMUST00000128560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047617 Paxx ENSMUST00000135915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047617 Paxx ENSMUST00000114261 ENSMUSP00000109899 TRANSLATION protein_coding - CCDS15775.1 1 205.0 0.0 3.4 4.9 297.7 0.0 1,-2 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000047617 Paxx ENSMUST00000124172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047617 Paxx ENSMUST00000151239 ENSMUSP00000120533 TRANSLATION protein_coding stop - 3 157.0 0.0 3.25 0.0 185.8 0.0 1,-2 0.0223 6 -2.0 MINOR ENSMUSG00000047617 Paxx ENSMUST00000130130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047617 Paxx ENSMUST00000133919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047617 Paxx ENSMUST00000141613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027077 Smtnl1 ENSMUST00000028471 ENSMUSP00000028471 TRANSLATION protein_coding - CCDS16195.1 1 459.0 0.0 2.8 1.0 77.6 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000027075 Slc43a1 ENSMUST00000146816 ENSMUSP00000121368 TRANSLATION protein_coding stop - 2 138.0 0.0 0.0 0.0 0.0 4.0 -3,-7 0.0026 1 -2.0 MINOR ENSMUSG00000027075 Slc43a1 ENSMUST00000121114 ENSMUSP00000112642 TRANSLATION protein_coding - CCDS38163.1 1 564.0 0.0 0.0 6.0 47.8 14.0 -3,-7 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000027075 Slc43a1 ENSMUST00000111625 ENSMUSP00000107252 TRANSLATION protein_coding - CCDS38162.1 1 590.0 0.0 0.0 1.7 47.8 14.0 -4,-7 0.3879 4 6.28 MINOR ENSMUSG00000027075 Slc43a1 ENSMUST00000145004 - NO_TRANSLATION retained_intron ENSMUSG00000027075 Slc43a1 ENSMUST00000111624 ENSMUSP00000107251 TRANSLATION protein_coding - CCDS38163.1 1 564.0 0.0 0.0 6.0 47.8 14.0 -3,-7 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000027075 Slc43a1 ENSMUST00000028469 ENSMUSP00000028469 TRANSLATION protein_coding - CCDS50624.1 1 607.0 0.0 0.0 0.4 47.8 14.0 -4,-2 0.2414 4 6.0 MINOR ENSMUSG00000033852 Gm28042 ENSMUST00000162393 ENSMUSP00000125329 TRANSLATION nonsense_mediated_decay,RT - - 2 243.0 0.0 4.625 0.0 171.5 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000033852 Gm28042 ENSMUST00000125805 ENSMUSP00000122869 TRANSLATION nonsense_mediated_decay,RT start - 5 80.0 0.0 1.75 0.0 87.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000033852 Gm28042 ENSMUST00000129685 ENSMUSP00000115498 TRANSLATION protein_coding,RT - - 5 1014.0 4.0 16.55375 0.0 339.4 0.0 -4,-5 0.9216 - -2.0 PRINCIPAL:5 ENSMUSG00000033852 Gm28042 ENSMUST00000156805 ENSMUSP00000117535 TRANSLATION protein_coding,RT - - 5 892.0 4.0 14.75375 1.0 339.4 0.0 -4,-5 0.1397 - -2.0 ALTERNATIVE:2 ENSMUSG00000069020 Urm1 ENSMUST00000156944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069020 Urm1 ENSMUST00000149379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069020 Urm1 ENSMUST00000130542 - NO_TRANSLATION retained_intron ENSMUSG00000069020 Urm1 ENSMUST00000123021 - NO_TRANSLATION retained_intron ENSMUSG00000069020 Urm1 ENSMUST00000091142 ENSMUSP00000088676 TRANSLATION protein_coding - CCDS15859.1 1 101.0 0.0 3.25 30.9 134.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000069020 Urm1 ENSMUST00000147325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046470 Sox18 ENSMUST00000054491 ENSMUSP00000062759 TRANSLATION protein_coding - CCDS17218.1 1 377.0 0.0 0.8 2.4 140.4 0.0 -4,-5 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000078935 1700025C18Rik ENSMUST00000109304 ENSMUSP00000104927 TRANSLATION protein_coding - - 1 89.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.5842 - 0.0 PRINCIPAL:1 ENSMUSG00000068882 Ssb ENSMUST00000090852 ENSMUSP00000088365 TRANSLATION protein_coding - CCDS16101.1 1 415.0 0.0 7.88 0.1 223.6 0.0 -4,-5 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000068882 Ssb ENSMUST00000132186 ENSMUSP00000119773 TRANSLATION nonsense_mediated_decay - - 1 159.0 0.0 3.915 0.0 101.7 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000068882 Ssb ENSMUST00000132603 ENSMUSP00000115666 TRANSLATION protein_coding start - 5 230.0 0.0 3.13 0.0 104.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000068882 Ssb ENSMUST00000166411 ENSMUSP00000130313 TRANSLATION protein_coding - CCDS16101.1 5 415.0 0.0 7.88 0.1 223.6 0.0 -4,-5 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000068882 Ssb ENSMUST00000156057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068882 Ssb ENSMUST00000112260 ENSMUSP00000107879 TRANSLATION protein_coding stop - 3 184.0 0.0 4.75 0.0 119.2 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000026815 Gfi1b ENSMUST00000145690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026815 Gfi1b ENSMUST00000028156 ENSMUSP00000028156 TRANSLATION protein_coding - CCDS15843.1 1 330.0 23.0 3.1 9.2 121.3 0.0 -4,-2 1.0 - 16.202 PRINCIPAL:4 ENSMUSG00000026815 Gfi1b ENSMUST00000164290 ENSMUSP00000128052 TRANSLATION protein_coding - CCDS50549.1 1 363.0 23.0 3.5 5.6 121.3 0.0 -4,-2 0.7898 - 15.683 ALTERNATIVE:1 ENSMUSG00000026815 Gfi1b ENSMUST00000155686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068614 Actc1 ENSMUST00000149125 ENSMUSP00000123370 TRANSLATION protein_coding stop - 3 43.0 7.0 1.0 0.0 48.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068614 Actc1 ENSMUST00000090269 ENSMUSP00000087736 TRANSLATION protein_coding - CCDS16564.1 1 377.0 35.0 6.0 36.9 499.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000074577 Ripor3 ENSMUST00000131572 - NO_TRANSLATION retained_intron ENSMUSG00000074577 Ripor3 ENSMUST00000142702 - NO_TRANSLATION retained_intron ENSMUSG00000074577 Ripor3 ENSMUST00000123782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074577 Ripor3 ENSMUST00000099073 ENSMUSP00000096672 TRANSLATION protein_coding - CCDS38341.1 1 938.0 0.0 0.0 3.6 552.6 0.0 -4,0 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000062646 Ganc ENSMUST00000154404 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062646 Ganc ENSMUST00000154574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062646 Ganc ENSMUST00000154963 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062646 Ganc ENSMUST00000153660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062646 Ganc ENSMUST00000136993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062646 Ganc ENSMUST00000132835 - NO_TRANSLATION retained_intron ENSMUSG00000062646 Ganc ENSMUST00000152437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062646 Ganc ENSMUST00000127367 - NO_TRANSLATION retained_intron ENSMUSG00000062646 Ganc ENSMUST00000154435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062646 Ganc ENSMUST00000145134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062646 Ganc ENSMUST00000043755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062646 Ganc ENSMUST00000135074 ENSMUSP00000116898 TRANSLATION protein_coding - CCDS38211.1 2 913.0 0.0 17.255 0.0 567.0 0.0 -4,-5 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000062646 Ganc ENSMUST00000143409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062646 Ganc ENSMUST00000131523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026941 Mamdc4 ENSMUST00000114223 ENSMUSP00000109861 TRANSLATION protein_coding - - 5 1228.0 8.0 3.568 0.0 676.9 2.0 2,-2 0.9644 - 14.0 ALTERNATIVE:2 ENSMUSG00000026941 Mamdc4 ENSMUST00000152237 ENSMUSP00000119789 TRANSLATION protein_coding start/stop - 5 1130.0 8.0 3.568 0.0 636.0 2.0 -4,-5 0.2364 - -2.0 MINOR ENSMUSG00000026941 Mamdc4 ENSMUST00000152124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026941 Mamdc4 ENSMUST00000135288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026941 Mamdc4 ENSMUST00000142811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026941 Mamdc4 ENSMUST00000095117 ENSMUSP00000092735 TRANSLATION protein_coding - CCDS50531.1 5 1232.0 8.0 3.568 0.0 676.9 2.0 3,-2 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000038980 Rbbp8nl ENSMUST00000038529 ENSMUSP00000047237 TRANSLATION protein_coding - CCDS17174.1 1 614.0 0.0 4.0 0.0 175.0 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000016344 Ppdpf ENSMUST00000138800 - NO_TRANSLATION retained_intron ENSMUSG00000016344 Ppdpf ENSMUST00000135011 - NO_TRANSLATION retained_intron ENSMUSG00000016344 Ppdpf ENSMUST00000146089 - NO_TRANSLATION retained_intron ENSMUSG00000016344 Ppdpf ENSMUST00000016488 ENSMUSP00000016488 TRANSLATION protein_coding - CCDS17202.1 1 115.0 0.0 0.0 2.6 175.0 0.0 -4,0 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000016344 Ppdpf ENSMUST00000127971 - NO_TRANSLATION retained_intron ENSMUSG00000016344 Ppdpf ENSMUST00000108841 ENSMUSP00000104469 TRANSLATION protein_coding - CCDS17202.1 1 115.0 0.0 0.0 2.6 175.0 0.0 -4,0 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000075114 Or4p8 ENSMUST00000214297 ENSMUSP00000149695 TRANSLATION protein_coding - CCDS16354.1 5 308.0 0.0 1.0 9.3 163.7 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075114 Or4p8 ENSMUST00000099810 ENSMUSP00000097398 TRANSLATION protein_coding - CCDS16354.1 - 308.0 0.0 1.0 9.3 163.7 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075114 Or4p8 ENSMUST00000214121 ENSMUSP00000149280 TRANSLATION protein_coding - CCDS16354.1 3 308.0 0.0 1.0 9.3 163.7 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070857 Or10ag52 ENSMUST00000079966 ENSMUSP00000078883 TRANSLATION protein_coding - CCDS16285.1 - 326.0 0.0 1.0 4.7 178.3 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070857 Or10ag52 ENSMUST00000215611 ENSMUSP00000150991 TRANSLATION protein_coding - CCDS16285.1 5 326.0 0.0 1.0 4.7 178.3 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026921 Egfl7 ENSMUST00000166920 ENSMUSP00000128741 TRANSLATION protein_coding - - 1 275.0 11.0 2.237 7.2 102.3 0.0 2,-2 0.8913 1 16.0 ALTERNATIVE:1 ENSMUSG00000026921 Egfl7 ENSMUST00000174656 ENSMUSP00000134186 TRANSLATION protein_coding start - 3 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026921 Egfl7 ENSMUST00000174211 ENSMUSP00000134034 TRANSLATION protein_coding - CCDS15807.2 1 278.0 11.0 2.237 7.2 102.3 0.0 2,-2 1.0 1 16.0 PRINCIPAL:4 ENSMUSG00000026921 Egfl7 ENSMUST00000238983 ENSMUSP00000158876 TRANSLATION protein_coding - CCDS15807.2 - 278.0 11.0 2.237 7.2 102.3 0.0 2,-2 1.0 1 16.0 PRINCIPAL:4 ENSMUSG00000026921 Egfl7 ENSMUST00000152988 ENSMUSP00000133968 TRANSLATION protein_coding - - 2 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000026921 Egfl7 ENSMUST00000174465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026921 Egfl7 ENSMUST00000172683 - NO_TRANSLATION retained_intron ENSMUSG00000026921 Egfl7 ENSMUST00000239075 ENSMUSP00000159032 TRANSLATION protein_coding - - - 275.0 11.0 2.237 7.2 102.3 0.0 2,-2 0.8913 1 16.0 ALTERNATIVE:1 ENSMUSG00000026921 Egfl7 ENSMUST00000173920 ENSMUSP00000134503 TRANSLATION protein_coding stop - 3 103.0 0.0 0.0 0.0 70.4 0.0 2,-2 0.0025 - -2.0 MINOR ENSMUSG00000026921 Egfl7 ENSMUST00000149460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026921 Egfl7 ENSMUST00000238951 ENSMUSP00000158990 TRANSLATION protein_coding - CCDS15807.2 - 278.0 11.0 2.237 7.2 102.3 0.0 2,-2 1.0 1 16.0 PRINCIPAL:4 ENSMUSG00000026921 Egfl7 ENSMUST00000152713 ENSMUSP00000121896 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.003 - -2.0 MINOR ENSMUSG00000026921 Egfl7 ENSMUST00000149789 ENSMUSP00000133465 TRANSLATION protein_coding - - 3 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000026921 Egfl7 ENSMUST00000145575 ENSMUSP00000118924 TRANSLATION protein_coding stop - 2 151.0 8.0 1.532 0.0 70.4 0.0 2,-2 0.0022 - -2.0 MINOR ENSMUSG00000026921 Egfl7 ENSMUST00000100290 ENSMUSP00000097863 TRANSLATION protein_coding - - 1 262.0 11.0 2.237 0.0 102.3 0.0 2,-2 0.1171 1 14.0 MINOR ENSMUSG00000026921 Egfl7 ENSMUST00000102907 ENSMUSP00000099971 TRANSLATION protein_coding - - 1 275.0 11.0 2.237 7.2 102.3 0.0 2,-2 0.8913 1 16.0 ALTERNATIVE:1 ENSMUSG00000026921 Egfl7 ENSMUST00000147351 - NO_TRANSLATION retained_intron ENSMUSG00000026921 Egfl7 ENSMUST00000174572 - NO_TRANSLATION retained_intron ENSMUSG00000026921 Egfl7 ENSMUST00000139801 ENSMUSP00000123465 TRANSLATION nonsense_mediated_decay - - 5 238.0 0.0 0.132 0.0 70.4 0.0 2,-2 0.0051 - -2.0 MINOR ENSMUSG00000026921 Egfl7 ENSMUST00000150404 ENSMUSP00000115482 TRANSLATION protein_coding - - 5 275.0 11.0 2.237 7.2 102.3 0.0 2,-2 0.8913 1 16.0 ALTERNATIVE:1 ENSMUSG00000026921 Egfl7 ENSMUST00000173777 - NO_TRANSLATION retained_intron ENSMUSG00000026921 Egfl7 ENSMUST00000131112 ENSMUSP00000122245 TRANSLATION protein_coding start - 2 71.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059023 Or4c11b ENSMUST00000073458 ENSMUSP00000073163 TRANSLATION protein_coding - CCDS16349.1 - 307.0 0.0 1.0 9.7 156.8 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059023 Or4c11b ENSMUST00000214018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059023 Or4c11b ENSMUST00000216213 ENSMUSP00000150454 TRANSLATION protein_coding - CCDS16349.1 5 307.0 0.0 1.0 9.7 156.8 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078899 Gm4631 ENSMUST00000109050 ENSMUSP00000104678 TRANSLATION protein_coding start - 5 497.0 59.0 1.3 0.1 389.5 0.0 -4,-5 0.516 - -2.0 MINOR ENSMUSG00000078899 Gm4631 ENSMUST00000121393 ENSMUSP00000113670 TRANSLATION protein_coding - - 2 498.0 59.0 1.3 0.1 389.5 0.0 -4,-5 0.8312 - 18.0 PRINCIPAL:1 ENSMUSG00000026788 Zbtb43 ENSMUST00000113156 ENSMUSP00000108781 TRANSLATION protein_coding - CCDS15942.1 1 504.0 12.0 2.2 0.1 98.7 0.0 -4,-2 0.1748 2 18.0 MINOR ENSMUSG00000026788 Zbtb43 ENSMUST00000095035 ENSMUSP00000092645 TRANSLATION protein_coding - CCDS15942.1 5 504.0 12.0 2.2 0.1 98.7 0.0 -4,-2 0.1748 2 18.0 MINOR ENSMUSG00000026788 Zbtb43 ENSMUST00000155198 ENSMUSP00000120989 TRANSLATION protein_coding stop - 2 160.0 0.0 1.6 0.0 98.7 0.0 -4,-5 0.0126 2 -2.0 MINOR ENSMUSG00000026788 Zbtb43 ENSMUST00000028125 ENSMUSP00000028125 TRANSLATION protein_coding - CCDS15943.1 1 467.0 12.0 2.2 19.4 98.7 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000026788 Zbtb43 ENSMUST00000126442 ENSMUSP00000122729 TRANSLATION protein_coding stop - 1 71.0 0.0 1.0 0.0 52.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035829 Ppp1r26 ENSMUST00000154081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035829 Ppp1r26 ENSMUST00000128199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035829 Ppp1r26 ENSMUST00000040324 ENSMUSP00000042173 TRANSLATION protein_coding - CCDS15836.1 1 1163.0 0.0 0.0 0.0 1030.7 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000035829 Ppp1r26 ENSMUST00000150362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035829 Ppp1r26 ENSMUST00000189694 ENSMUSP00000139546 TRANSLATION protein_coding - CCDS15836.1 1 1163.0 0.0 0.0 0.0 1030.7 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000075217 Fads2b ENSMUST00000099923 ENSMUSP00000097507 TRANSLATION protein_coding - CCDS38168.1 1 487.0 19.0 10.55 4.3 200.4 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000111590 Or4p4 ENSMUST00000216512 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000111590 Or4p4 ENSMUST00000120518 ENSMUSP00000149414 TRANSLATION protein_coding - - - 309.0 0.0 1.0 10.8 150.0 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111590 Or4p4 ENSMUST00000217373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048222 Mfap1b ENSMUST00000056732 ENSMUSP00000049548 TRANSLATION protein_coding - CCDS38217.1 1 439.0 0.0 3.2 27.9 261.7 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000013338 Fer1l4 ENSMUST00000150144 - NO_TRANSLATION retained_intron ENSMUSG00000013338 Fer1l4 ENSMUST00000138297 - NO_TRANSLATION retained_intron ENSMUSG00000013338 Fer1l4 ENSMUST00000109611 ENSMUSP00000105240 TRANSLATION protein_coding - - 5 1994.0 16.0 3.0 0.1 572.4 0.0 -4,-1 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000013338 Fer1l4 ENSMUST00000132912 ENSMUSP00000123091 TRANSLATION protein_coding start/stop - 5 140.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000013338 Fer1l4 ENSMUST00000130764 ENSMUSP00000114324 TRANSLATION nonsense_mediated_decay start - 5 67.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000013338 Fer1l4 ENSMUST00000150538 - NO_TRANSLATION retained_intron ENSMUSG00000016356 Col20a1 ENSMUST00000108856 ENSMUSP00000104484 TRANSLATION protein_coding - - 5 1362.0 5.0 17.3385 0.4 443.6 0.0 0,-4 0.4254 - 11.5 ALTERNATIVE:2 ENSMUSG00000016356 Col20a1 ENSMUST00000152473 ENSMUSP00000117514 TRANSLATION nonsense_mediated_decay start - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000016356 Col20a1 ENSMUST00000149179 ENSMUSP00000115291 TRANSLATION protein_coding - - 5 1288.0 5.0 18.0885 0.0 412.7 0.0 0,-4 0.6759 - 12.4 ALTERNATIVE:2 ENSMUSG00000016356 Col20a1 ENSMUST00000228434 ENSMUSP00000153871 TRANSLATION protein_coding - CCDS50844.1 - 1320.0 5.0 17.3385 0.0 443.6 0.0 0,-4 0.736 - 11.5 PRINCIPAL:4 ENSMUSG00000016356 Col20a1 ENSMUST00000155425 ENSMUSP00000114654 TRANSLATION protein_coding start - 1 135.0 0.0 2.265 0.0 42.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026768 Itga8 ENSMUST00000129370 - NO_TRANSLATION retained_intron ENSMUSG00000026768 Itga8 ENSMUST00000141477 - NO_TRANSLATION retained_intron ENSMUSG00000026768 Itga8 ENSMUST00000172716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026768 Itga8 ENSMUST00000148055 ENSMUSP00000134238 TRANSLATION protein_coding start - 5 133.0 0.0 1.8 0.0 0.0 1.0 -4,-6 0.0007 1 -2.0 MINOR ENSMUSG00000026768 Itga8 ENSMUST00000130548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026768 Itga8 ENSMUST00000028106 ENSMUSP00000028106 TRANSLATION protein_coding - CCDS15689.1 1 1062.0 26.0 18.5 8.0 501.7 1.0 0,-3 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000026768 Itga8 ENSMUST00000172791 ENSMUSP00000134154 TRANSLATION nonsense_mediated_decay - - 1 590.0 19.0 11.15 0.0 144.9 0.0 0,-3 0.0026 8 -2.0 MINOR ENSMUSG00000038751 Ptk6 ENSMUST00000016511 ENSMUSP00000016511 TRANSLATION protein_coding - CCDS17203.1 1 451.0 18.0 8.0 9.3 402.0 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000078887 Gm6710 ENSMUST00000109012 ENSMUSP00000104640 TRANSLATION protein_coding - CCDS50823.1 5 554.0 67.0 2.15 0.4 431.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078887 Gm6710 ENSMUST00000109011 ENSMUSP00000104639 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 80.1 0.0 -4,-5 0.0 - 4.884 MINOR ENSMUSG00000078887 Gm6710 ENSMUST00000149549 - NO_TRANSLATION retained_intron ENSMUSG00000078887 Gm6710 ENSMUST00000147820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015488 Cacfd1 ENSMUST00000114004 ENSMUSP00000109637 TRANSLATION protein_coding - CCDS57161.1 1 106.0 0.0 0.1485 0.0 74.3 3.0 -4,-7 0.0306 - 4.698 MINOR ENSMUSG00000015488 Cacfd1 ENSMUST00000114003 ENSMUSP00000109636 TRANSLATION protein_coding - - 3 109.0 0.0 1.3 0.0 81.5 3.0 -2,-5 0.0448 - 9.894 MINOR ENSMUSG00000015488 Cacfd1 ENSMUST00000114007 ENSMUSP00000109640 TRANSLATION protein_coding - CCDS38086.1 1 171.0 0.0 1.4485 9.0 106.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000015488 Cacfd1 ENSMUST00000145290 - NO_TRANSLATION retained_intron ENSMUSG00000015488 Cacfd1 ENSMUST00000133807 ENSMUSP00000122562 TRANSLATION protein_coding start - 1 118.0 0.0 0.1485 0.0 65.9 1.0 -4,-6 0.0016 - -2.0 MINOR ENSMUSG00000015488 Cacfd1 ENSMUST00000114005 ENSMUSP00000109638 TRANSLATION protein_coding - CCDS57160.1 1 128.0 0.0 0.4485 0.0 74.3 3.0 -4,-7 0.0275 - 5.94 MINOR ENSMUSG00000015488 Cacfd1 ENSMUST00000114006 ENSMUSP00000109639 TRANSLATION protein_coding - CCDS38086.1 1 171.0 0.0 1.4485 9.0 106.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000015488 Cacfd1 ENSMUST00000133126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025838 Pramel6 ENSMUST00000111572 ENSMUSP00000107198 TRANSLATION protein_coding - CCDS16294.1 1 485.0 0.0 2.0 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000025838 Pramel6 ENSMUST00000132216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025838 Pramel6 ENSMUST00000138504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025838 Pramel6 ENSMUST00000026956 ENSMUSP00000026956 TRANSLATION protein_coding - CCDS16294.1 1 485.0 0.0 2.0 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000025838 Pramel6 ENSMUST00000150746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025838 Pramel6 ENSMUST00000148582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039648 Kyat1 ENSMUST00000113661 ENSMUSP00000109291 TRANSLATION protein_coding - CCDS15874.1 1 424.0 14.0 10.25 11.5 188.2 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000039648 Kyat1 ENSMUST00000113662 ENSMUSP00000109292 TRANSLATION protein_coding - CCDS15874.1 5 424.0 14.0 10.25 11.5 188.2 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000039648 Kyat1 ENSMUST00000149522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039648 Kyat1 ENSMUST00000044038 ENSMUSP00000038612 TRANSLATION protein_coding - CCDS15874.1 1 424.0 14.0 10.25 11.5 188.2 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000039648 Kyat1 ENSMUST00000148555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039648 Kyat1 ENSMUST00000113660 ENSMUSP00000109290 TRANSLATION protein_coding - - 5 381.0 12.0 9.25 0.0 140.7 0.0 -4,-5 0.0008 9 11.82 MINOR ENSMUSG00000039648 Kyat1 ENSMUST00000113663 ENSMUSP00000109293 TRANSLATION protein_coding - CCDS15874.1 1 424.0 14.0 10.25 11.5 188.2 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000039648 Kyat1 ENSMUST00000113659 ENSMUSP00000109289 TRANSLATION protein_coding - - 5 374.0 10.0 9.25 2.1 140.6 0.0 -4,-5 0.0452 9 10.797 MINOR ENSMUSG00000050468 Astl ENSMUST00000059839 ENSMUSP00000054456 TRANSLATION protein_coding - CCDS16700.1 1 414.0 4.0 5.7 0.0 182.0 0.0 -4,-7 0.1941 - 12.0 ALTERNATIVE:2 ENSMUSG00000050468 Astl ENSMUST00000089673 ENSMUSP00000087102 TRANSLATION protein_coding - CCDS71138.1 1 435.0 4.0 5.7 3.1 182.0 0.0 2,-3 1.0 - 13.0 PRINCIPAL:2 ENSMUSG00000050468 Astl ENSMUST00000156747 ENSMUSP00000116771 TRANSLATION protein_coding stop - 5 193.0 4.0 3.95 0.0 119.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000050468 Astl ENSMUST00000179618 ENSMUSP00000135987 TRANSLATION protein_coding - CCDS16700.1 1 414.0 4.0 5.7 0.0 182.0 0.0 -4,-7 0.1941 - 12.0 ALTERNATIVE:2 ENSMUSG00000063507 Gm1330 ENSMUST00000081553 ENSMUSP00000080268 TRANSLATION protein_coding - - 5 157.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.6285 - 0.0 PRINCIPAL:1 ENSMUSG00000039092 Sptlc3 ENSMUST00000110083 ENSMUSP00000105710 TRANSLATION protein_coding - CCDS16800.1 1 563.0 13.0 10.8 1.1 192.6 1.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000039092 Sptlc3 ENSMUST00000047370 ENSMUSP00000048313 TRANSLATION protein_coding - CCDS16800.1 1 563.0 13.0 10.8 1.1 192.6 1.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000042448 Hoxd1 ENSMUST00000047793 ENSMUSP00000043078 TRANSLATION protein_coding - CCDS16147.1 1 328.0 0.0 0.8 4.2 72.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075095 Or4c15b ENSMUST00000099788 ENSMUSP00000097376 TRANSLATION protein_coding - CCDS16372.1 - 311.0 0.0 1.0 10.4 170.0 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075095 Or4c15b ENSMUST00000213883 ENSMUSP00000150537 TRANSLATION protein_coding - CCDS16372.1 5 311.0 0.0 1.0 10.4 170.0 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075095 Or4c15b ENSMUST00000214593 ENSMUSP00000150344 TRANSLATION protein_coding - CCDS16372.1 5 311.0 0.0 1.0 10.4 170.0 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075061 Or4b1b ENSMUST00000117141 ENSMUSP00000150745 TRANSLATION protein_coding - CCDS16412.1 5 308.0 0.0 1.0 9.2 174.9 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075061 Or4b1b ENSMUST00000099750 ENSMUSP00000097339 TRANSLATION protein_coding - CCDS16412.1 - 308.0 0.0 1.0 9.2 174.9 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068818 Or8w1 ENSMUST00000090711 ENSMUSP00000088213 TRANSLATION protein_coding - CCDS16299.1 - 308.0 0.0 1.0 12.5 154.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068818 Or8w1 ENSMUST00000216082 ENSMUSP00000149683 TRANSLATION protein_coding - CCDS16299.1 5 308.0 0.0 1.0 12.5 154.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058884 Or5m13 ENSMUST00000213474 ENSMUSP00000149785 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 11.8 193.6 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040495 Chrm4 ENSMUST00000045537 ENSMUSP00000040808 TRANSLATION protein_coding - CCDS16439.1 - 479.0 0.0 1.0 10.4 250.9 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000111454 Or5g29 ENSMUST00000052307 ENSMUSP00000059970 TRANSLATION protein_coding - CCDS16210.1 - 314.0 0.0 1.0 13.5 180.2 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000111454 Or5g29 ENSMUST00000215083 ENSMUSP00000150713 TRANSLATION protein_coding - CCDS16210.1 5 314.0 0.0 1.0 13.5 180.2 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075273 Ift70b ENSMUST00000099996 ENSMUSP00000097576 TRANSLATION protein_coding - CCDS38150.1 - 664.0 0.0 1.0 16.5 15.0 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000037902 Sirpa ENSMUST00000127751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037902 Sirpa ENSMUST00000049262 ENSMUSP00000049022 TRANSLATION protein_coding - CCDS71142.1 1 513.0 0.0 3.53 1.1 151.7 2.0 2,-2 0.817 11 8.125 ALTERNATIVE:2 ENSMUSG00000037902 Sirpa ENSMUST00000160276 ENSMUSP00000125004 TRANSLATION protein_coding - CCDS50708.1 1 291.0 0.0 1.4 1.8 65.7 2.0 2,-2 0.2274 5 3.406 MINOR ENSMUSG00000037902 Sirpa ENSMUST00000103203 ENSMUSP00000099492 TRANSLATION protein_coding - CCDS16729.1 5 509.0 0.0 3.53 1.1 151.7 2.0 2,-2 1.0 11 8.125 PRINCIPAL:4 ENSMUSG00000037902 Sirpa ENSMUST00000163034 ENSMUSP00000124888 TRANSLATION protein_coding - CCDS79845.1 3 172.0 0.0 0.4 0.0 0.0 2.0 -1,-4 0.0464 3 0.0 MINOR ENSMUSG00000037902 Sirpa ENSMUST00000160952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037902 Sirpa ENSMUST00000136153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037902 Sirpa ENSMUST00000099113 ENSMUSP00000096713 TRANSLATION protein_coding - CCDS71143.1 3 295.0 0.0 1.4 1.8 65.7 2.0 2,-2 0.2274 5 3.406 MINOR ENSMUSG00000037902 Sirpa ENSMUST00000153491 ENSMUSP00000120324 TRANSLATION protein_coding stop - 5 158.0 0.0 1.33 0.0 65.7 0.0 2,-2 0.0017 2 -2.0 MINOR ENSMUSG00000037902 Sirpa ENSMUST00000136554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037902 Sirpa ENSMUST00000161620 ENSMUSP00000124048 TRANSLATION protein_coding - CCDS71142.1 1 513.0 0.0 3.53 1.1 151.7 2.0 2,-2 0.817 11 8.125 ALTERNATIVE:2 ENSMUSG00000037902 Sirpa ENSMUST00000103202 ENSMUSP00000099491 TRANSLATION protein_coding - CCDS16729.1 1 509.0 0.0 3.53 1.1 151.7 2.0 2,-2 1.0 11 8.125 PRINCIPAL:4 ENSMUSG00000037902 Sirpa ENSMUST00000179001 ENSMUSP00000137611 TRANSLATION protein_coding - CCDS16729.1 5 509.0 0.0 3.53 1.1 151.7 2.0 2,-2 1.0 11 8.125 PRINCIPAL:4 ENSMUSG00000037902 Sirpa ENSMUST00000162764 - NO_TRANSLATION retained_intron ENSMUSG00000075467 Dnlz ENSMUST00000028295 ENSMUSP00000028295 TRANSLATION protein_coding - CCDS38083.1 1 177.0 4.0 1.8 2.1 105.2 0.0 -4,0 1.0 2 17.0 PRINCIPAL:1 ENSMUSG00000075467 Dnlz ENSMUST00000125848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000111869 Or1j14 ENSMUST00000074192 ENSMUSP00000073818 TRANSLATION protein_coding - CCDS15975.1 - 312.0 0.0 1.0 6.3 188.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111869 Or1j14 ENSMUST00000216275 ENSMUSP00000149751 TRANSLATION protein_coding - CCDS15975.1 5 312.0 0.0 1.0 6.3 188.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027487 Cdk5rap1 ENSMUST00000028990 ENSMUSP00000028990 TRANSLATION protein_coding - CCDS16931.1 1 588.0 0.0 10.75 8.4 247.1 0.0 0,3 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000027487 Cdk5rap1 ENSMUST00000109731 ENSMUSP00000105353 TRANSLATION protein_coding - CCDS16931.1 5 588.0 0.0 10.75 8.4 247.1 0.0 0,3 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000027487 Cdk5rap1 ENSMUST00000137918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027487 Cdk5rap1 ENSMUST00000152180 - NO_TRANSLATION retained_intron ENSMUSG00000027487 Cdk5rap1 ENSMUST00000150308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027487 Cdk5rap1 ENSMUST00000148289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027487 Cdk5rap1 ENSMUST00000109730 ENSMUSP00000105352 TRANSLATION protein_coding - - 1 190.0 0.0 2.5 0.0 77.4 0.0 0,3 0.0 - 0.0 MINOR ENSMUSG00000027115 Kif18a ENSMUST00000028527 ENSMUSP00000028527 TRANSLATION protein_coding - CCDS16507.1 1 886.0 11.0 5.575 0.4 387.9 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000027115 Kif18a ENSMUST00000151395 - NO_TRANSLATION retained_intron ENSMUSG00000027115 Kif18a ENSMUST00000162515 - NO_TRANSLATION retained_intron ENSMUSG00000027115 Kif18a ENSMUST00000152751 - NO_TRANSLATION retained_intron ENSMUSG00000027115 Kif18a ENSMUST00000144924 - NO_TRANSLATION retained_intron ENSMUSG00000027115 Kif18a ENSMUST00000130137 - NO_TRANSLATION retained_intron ENSMUSG00000059429 Or1l4 ENSMUST00000218602 ENSMUSP00000151617 TRANSLATION protein_coding - CCDS15995.1 5 312.0 0.0 1.0 5.8 195.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059429 Or1l4 ENSMUST00000213969 ENSMUSP00000150139 TRANSLATION protein_coding - CCDS15995.1 5 312.0 0.0 1.0 5.8 195.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059429 Or1l4 ENSMUST00000074168 ENSMUSP00000073801 TRANSLATION protein_coding - CCDS15995.1 - 312.0 0.0 1.0 5.8 195.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075139 Or5d14 ENSMUST00000183862 ENSMUSP00000139068 TRANSLATION protein_coding - CCDS16323.1 2 314.0 0.0 1.0 11.4 156.6 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075139 Or5d14 ENSMUST00000099837 ENSMUSP00000097425 TRANSLATION protein_coding - CCDS16323.1 - 314.0 0.0 1.0 11.4 156.6 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026805 Barhl1 ENSMUST00000174027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026805 Barhl1 ENSMUST00000113847 ENSMUSP00000109478 TRANSLATION protein_coding - CCDS15849.1 1 327.0 0.0 2.0 17.1 77.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026805 Barhl1 ENSMUST00000124059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026805 Barhl1 ENSMUST00000113849 ENSMUSP00000109480 TRANSLATION protein_coding - CCDS15849.1 1 327.0 0.0 2.0 17.1 77.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026805 Barhl1 ENSMUST00000050776 ENSMUSP00000053147 TRANSLATION protein_coding - CCDS15849.1 1 327.0 0.0 2.0 17.1 77.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074665 Bpifb4 ENSMUST00000154281 ENSMUSP00000159206 TRANSLATION protein_coding - - 5 829.0 0.0 4.905 0.0 201.7 0.0 2,-2 0.1339 3 12.0 MINOR ENSMUSG00000074665 Bpifb4 ENSMUST00000099181 ENSMUSP00000096786 TRANSLATION protein_coding - - 1 403.0 0.0 4.905 0.0 193.7 0.0 -2,1 0.0337 2 11.52 MINOR ENSMUSG00000074665 Bpifb4 ENSMUST00000109759 ENSMUSP00000105381 TRANSLATION protein_coding - CCDS16922.2 5 617.0 0.0 4.905 6.4 201.7 0.0 2,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000074665 Bpifb4 ENSMUST00000109757 ENSMUSP00000105379 TRANSLATION protein_coding - CCDS16922.2 5 617.0 0.0 4.905 6.4 201.7 0.0 2,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000094475 Gm11007 ENSMUST00000178120 ENSMUSP00000136499 TRANSLATION protein_coding - - 5 498.0 59.0 2.3 0.1 394.9 0.0 -4,-5 0.8042 - 18.0 PRINCIPAL:1 ENSMUSG00000094475 Gm11007 ENSMUST00000177700 ENSMUSP00000136514 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000026807 Ak8 ENSMUST00000123794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026807 Ak8 ENSMUST00000074156 ENSMUSP00000073789 TRANSLATION protein_coding - CCDS15846.1 1 479.0 12.0 10.1 12.2 147.8 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000026807 Ak8 ENSMUST00000137588 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094786 Gm14403 ENSMUST00000108947 ENSMUSP00000104575 TRANSLATION protein_coding - - 5 402.0 43.0 1.4 0.0 304.0 0.0 -4,-5 0.8228 - 18.0 PRINCIPAL:1 ENSMUSG00000094786 Gm14403 ENSMUST00000142549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068817 Or5w16 ENSMUST00000214723 ENSMUSP00000149706 TRANSLATION protein_coding - CCDS16306.1 5 311.0 0.0 1.0 13.4 150.9 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000068817 Or5w16 ENSMUST00000217572 ENSMUSP00000149645 TRANSLATION protein_coding - CCDS16306.1 - 311.0 0.0 1.0 13.4 150.9 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000068817 Or5w16 ENSMUST00000217102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074529 Zfp972 ENSMUST00000249320 ENSMUSP00000159693 TRANSLATION protein_coding - - - 59.0 0.0 0.198 0.0 0.0 0.0 -4,-7 0.0 - 0.792 MINOR ENSMUSG00000074529 Zfp972 ENSMUST00000249321 ENSMUSP00000159694 TRANSLATION protein_coding - - - 60.0 0.0 1.5 0.0 44.2 0.0 -4,-5 0.0245 - 9.822 MINOR ENSMUSG00000074529 Zfp972 ENSMUST00000108934 ENSMUSP00000104562 TRANSLATION protein_coding - CCDS84597.1 1 81.0 0.0 1.448 0.0 69.4 0.0 -4,-5 1.0 - 11.79 PRINCIPAL:1 ENSMUSG00000074607 Tox2 ENSMUST00000148599 ENSMUSP00000118219 TRANSLATION protein_coding start - 3 169.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000074607 Tox2 ENSMUST00000099110 ENSMUSP00000096710 TRANSLATION protein_coding - - 5 547.0 0.0 1.75 0.0 63.1 0.0 -3,-4 0.0431 2 12.0 MINOR ENSMUSG00000074607 Tox2 ENSMUST00000165937 ENSMUSP00000126243 TRANSLATION protein_coding - CCDS50790.1 5 522.0 0.0 1.75 0.3 63.1 0.0 -4,-1 0.4372 2 12.0 MINOR ENSMUSG00000074607 Tox2 ENSMUST00000128999 ENSMUSP00000122344 TRANSLATION protein_coding stop - 2 124.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0005 - -2.0 MINOR ENSMUSG00000074607 Tox2 ENSMUST00000109428 ENSMUSP00000105055 TRANSLATION protein_coding - - 5 505.0 0.0 1.75 5.7 63.1 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000048197 Or5w20 ENSMUST00000217436 ENSMUSP00000150945 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 13.4 150.8 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048197 Or5w20 ENSMUST00000052300 ENSMUSP00000057839 TRANSLATION protein_coding - CCDS16314.1 - 318.0 0.0 1.0 0.1 150.8 6.0 -4,-6 0.4593 - 12.0 MINOR ENSMUSG00000063844 Or4f53 ENSMUST00000218065 ENSMUSP00000151987 TRANSLATION protein_coding - CCDS16516.1 5 312.0 0.0 1.0 10.5 135.2 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063844 Or4f53 ENSMUST00000213658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063844 Or4f53 ENSMUST00000073322 ENSMUSP00000073046 TRANSLATION protein_coding - CCDS16516.1 - 312.0 0.0 1.0 10.5 135.2 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026882 4930568D16Rik ENSMUST00000028243 ENSMUSP00000028243 TRANSLATION protein_coding - CCDS50575.1 1 319.0 0.0 2.3 0.1 328.2 0.0 0,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078864 Gm14322 ENSMUST00000148388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078864 Gm14322 ENSMUST00000119838 ENSMUSP00000136870 TRANSLATION protein_coding - CCDS57202.1 5 358.0 38.0 1.7 0.0 249.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078864 Gm14322 ENSMUST00000108942 ENSMUSP00000104570 TRANSLATION protein_coding start - 2 357.0 38.0 1.7 0.0 249.4 0.0 -4,-5 0.3785 - -2.0 MINOR ENSMUSG00000026743 Mllt10 ENSMUST00000114671 ENSMUSP00000110319 TRANSLATION protein_coding - CCDS57155.1 1 990.0 9.0 5.5 0.4 104.8 0.0 -4,-5 0.0495 11 7.566 MINOR ENSMUSG00000026743 Mllt10 ENSMUST00000154041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026743 Mllt10 ENSMUST00000155352 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026743 Mllt10 ENSMUST00000133649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026743 Mllt10 ENSMUST00000150422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026743 Mllt10 ENSMUST00000114680 ENSMUSP00000110328 TRANSLATION protein_coding - CCDS15708.1 1 1068.0 15.0 7.25 7.2 153.7 0.0 -4,-5 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000026743 Mllt10 ENSMUST00000149786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026743 Mllt10 ENSMUST00000028076 ENSMUSP00000028076 TRANSLATION protein_coding - CCDS15708.1 1 1068.0 15.0 7.25 7.2 153.7 0.0 -4,-5 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000026743 Mllt10 ENSMUST00000114669 ENSMUSP00000110317 TRANSLATION protein_coding - - 5 525.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.001 1 0.0 MINOR ENSMUSG00000026743 Mllt10 ENSMUST00000148229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026743 Mllt10 ENSMUST00000153279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039873 Neurl2 ENSMUST00000042775 ENSMUSP00000041806 TRANSLATION protein_coding - CCDS38330.1 1 285.0 0.0 0.0 10.2 154.8 0.0 -4,-7 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000047363 Cstad ENSMUST00000129719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047363 Cstad ENSMUST00000102853 ENSMUSP00000099917 TRANSLATION protein_coding - CCDS15884.1 1 104.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.8435 - 0.0 PRINCIPAL:1 ENSMUSG00000027236 Eif3j1 ENSMUST00000142747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027236 Eif3j1 ENSMUST00000028668 ENSMUSP00000028668 TRANSLATION protein_coding - CCDS38219.1 1 261.0 0.0 3.2 1.1 214.0 0.0 -2,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026781 Acbd5 ENSMUST00000226571 ENSMUSP00000154188 TRANSLATION protein_coding - - - 519.0 6.0 3.25 0.4 92.4 1.0 -3,-6 0.1511 16 14.0 ALTERNATIVE:2 ENSMUSG00000026781 Acbd5 ENSMUST00000114523 ENSMUSP00000110169 TRANSLATION protein_coding - CCDS50515.1 1 473.0 6.0 3.25 0.1 92.4 1.0 -4,-5 0.2209 15 14.0 ALTERNATIVE:2 ENSMUSG00000026781 Acbd5 ENSMUST00000226938 - NO_TRANSLATION retained_intron ENSMUSG00000026781 Acbd5 ENSMUST00000114526 ENSMUSP00000110172 TRANSLATION protein_coding - CCDS50514.1 1 508.0 6.0 3.25 0.4 92.4 1.0 -3,-6 1.0 15 14.0 PRINCIPAL:2 ENSMUSG00000026781 Acbd5 ENSMUST00000227612 - NO_TRANSLATION retained_intron ENSMUSG00000026781 Acbd5 ENSMUST00000228050 ENSMUSP00000154043 TRANSLATION protein_coding - - - 520.0 6.0 3.25 0.4 92.4 1.0 -3,-6 0.1534 16 14.0 ALTERNATIVE:2 ENSMUSG00000026781 Acbd5 ENSMUST00000227809 ENSMUSP00000154023 TRANSLATION protein_coding - CCDS50516.1 - 472.0 6.0 3.25 0.1 92.4 1.0 -4,-5 0.2209 15 14.0 ALTERNATIVE:2 ENSMUSG00000026781 Acbd5 ENSMUST00000155602 ENSMUSP00000117325 TRANSLATION protein_coding - - 2 484.0 6.0 3.25 0.3 92.4 1.0 -4,-5 0.075 16 14.0 ALTERNATIVE:2 ENSMUSG00000026781 Acbd5 ENSMUST00000114529 ENSMUSP00000110175 TRANSLATION protein_coding - CCDS57156.1 1 509.0 6.0 3.25 0.4 92.4 1.0 -3,-6 0.7435 15 14.0 ALTERNATIVE:2 ENSMUSG00000026781 Acbd5 ENSMUST00000144088 ENSMUSP00000121395 TRANSLATION protein_coding stop - 3 52.0 4.0 1.5 0.0 40.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026781 Acbd5 ENSMUST00000028121 ENSMUSP00000028121 TRANSLATION protein_coding - CCDS50515.1 1 473.0 6.0 3.25 0.1 92.4 1.0 -4,-5 0.2209 15 14.0 ALTERNATIVE:2 ENSMUSG00000026781 Acbd5 ENSMUST00000227663 ENSMUSP00000154518 TRANSLATION protein_coding - - - 483.0 6.0 3.25 0.3 92.4 1.0 -4,-5 0.0699 16 14.0 ALTERNATIVE:2 ENSMUSG00000026781 Acbd5 ENSMUST00000228856 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026781 Acbd5 ENSMUST00000226252 - NO_TRANSLATION retained_intron ENSMUSG00000026781 Acbd5 ENSMUST00000228778 - NO_TRANSLATION retained_intron ENSMUSG00000026781 Acbd5 ENSMUST00000228891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026781 Acbd5 ENSMUST00000227816 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026781 Acbd5 ENSMUST00000227489 - NO_TRANSLATION retained_intron ENSMUSG00000075069 Or4c3 ENSMUST00000216616 ENSMUSP00000149126 TRANSLATION protein_coding - CCDS16403.1 5 308.0 0.0 1.0 11.5 159.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075069 Or4c3 ENSMUST00000099758 ENSMUSP00000097347 TRANSLATION protein_coding - CCDS16403.1 - 308.0 0.0 1.0 11.5 159.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075383 Or1n1 ENSMUST00000100150 ENSMUSP00000097727 TRANSLATION protein_coding - CCDS15984.1 - 310.0 0.0 1.0 10.9 189.5 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075383 Or1n1 ENSMUST00000215137 ENSMUSP00000150346 TRANSLATION protein_coding - CCDS15984.1 5 310.0 0.0 1.0 10.9 189.5 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075383 Or1n1 ENSMUST00000213676 ENSMUSP00000149369 TRANSLATION protein_coding - CCDS15984.1 5 310.0 0.0 1.0 10.9 189.5 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000087035 Tmem74bos ENSMUST00000137422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087035 Tmem74bos ENSMUST00000149319 ENSMUSP00000158580 TRANSLATION protein_coding - - 1 98.0 0.0 1.55 2.5 0.0 0.0 -4,-5 0.7505 - 7.0 PRINCIPAL:1 ENSMUSG00000027375 Mal ENSMUST00000028853 ENSMUSP00000028853 TRANSLATION protein_coding - CCDS50705.1 1 97.0 0.0 2.75 1.0 0.0 3.0 -4,-7 0.0139 - 4.002 MINOR ENSMUSG00000027375 Mal ENSMUST00000028854 ENSMUSP00000028854 TRANSLATION protein_coding - CCDS16707.1 1 153.0 0.0 3.75 19.8 53.7 4.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000017670 Elmo2 ENSMUST00000094329 ENSMUSP00000091887 TRANSLATION protein_coding - CCDS17075.1 1 720.0 0.0 18.41 31.9 459.2 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000017670 Elmo2 ENSMUST00000149844 - NO_TRANSLATION retained_intron ENSMUSG00000017670 Elmo2 ENSMUST00000103088 ENSMUSP00000099377 TRANSLATION protein_coding - - 5 798.0 4.0 17.41 0.0 436.3 0.0 -4,-5 0.0137 11 12.628 MINOR ENSMUSG00000017670 Elmo2 ENSMUST00000137188 ENSMUSP00000123232 TRANSLATION protein_coding start/stop - 3 194.0 0.0 5.25 0.0 202.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000017670 Elmo2 ENSMUST00000127496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017670 Elmo2 ENSMUST00000074046 ENSMUSP00000073691 TRANSLATION protein_coding - CCDS17076.1 1 732.0 0.0 17.91 24.3 453.1 0.0 -4,-5 0.9204 11 13.648 MINOR ENSMUSG00000017670 Elmo2 ENSMUST00000071699 ENSMUSP00000071619 TRANSLATION protein_coding - - 1 798.0 4.0 17.41 0.0 436.3 0.0 -4,-5 0.0137 11 12.628 MINOR ENSMUSG00000017670 Elmo2 ENSMUST00000148643 ENSMUSP00000117124 TRANSLATION protein_coding start - 1 290.0 0.0 6.5 0.0 145.6 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000017670 Elmo2 ENSMUST00000128690 ENSMUSP00000114303 TRANSLATION protein_coding stop - 5 41.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017670 Elmo2 ENSMUST00000103091 ENSMUSP00000099380 TRANSLATION protein_coding - CCDS17075.1 1 720.0 0.0 18.41 31.9 459.2 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000017670 Elmo2 ENSMUST00000133205 ENSMUSP00000119682 TRANSLATION protein_coding stop - 2 122.0 0.0 3.91 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000017670 Elmo2 ENSMUST00000126318 ENSMUSP00000116124 TRANSLATION nonsense_mediated_decay - - 5 63.0 0.0 0.816 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059173 Pde1a ENSMUST00000125887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059173 Pde1a ENSMUST00000183775 ENSMUSP00000139327 TRANSLATION nonsense_mediated_decay - CCDS16172.1 5 545.0 6.0 7.75 5.9 385.1 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000059173 Pde1a ENSMUST00000102652 ENSMUSP00000099712 TRANSLATION protein_coding - CCDS16173.1 1 456.0 6.0 7.75 0.0 385.1 0.0 -4,-5 0.0953 9 17.502 MINOR ENSMUSG00000059173 Pde1a ENSMUST00000102651 ENSMUSP00000099711 TRANSLATION protein_coding - CCDS16174.1 1 465.0 6.0 7.75 0.0 385.1 0.0 -4,-5 0.0952 9 17.502 MINOR ENSMUSG00000059173 Pde1a ENSMUST00000134739 ENSMUSP00000120188 TRANSLATION protein_coding start/stop - 5 476.0 6.0 8.0 0.0 385.1 0.0 -4,-5 0.0334 10 -2.0 MINOR ENSMUSG00000059173 Pde1a ENSMUST00000146076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059173 Pde1a ENSMUST00000102655 ENSMUSP00000099715 TRANSLATION protein_coding - CCDS16172.1 1 545.0 6.0 7.75 5.9 385.1 0.0 -4,-5 1.0 13 19.502 PRINCIPAL:1 ENSMUSG00000059173 Pde1a ENSMUST00000102653 ENSMUSP00000099713 TRANSLATION protein_coding - CCDS16172.1 1 545.0 6.0 7.75 5.9 385.1 0.0 -4,-5 1.0 13 19.502 PRINCIPAL:1 ENSMUSG00000059173 Pde1a ENSMUST00000090756 ENSMUSP00000088260 TRANSLATION protein_coding - - 1 420.0 6.0 7.75 0.0 311.9 0.0 -4,-7 0.0085 9 13.11 MINOR ENSMUSG00000046618 Olfml2a ENSMUST00000057279 ENSMUSP00000058761 TRANSLATION protein_coding - CCDS16013.1 1 681.0 0.0 1.14 0.0 283.0 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000074966 Or4f52 ENSMUST00000217539 ENSMUSP00000150515 TRANSLATION protein_coding - CCDS16515.1 5 312.0 0.0 1.0 10.5 125.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074966 Or4f52 ENSMUST00000099620 ENSMUSP00000097215 TRANSLATION protein_coding - CCDS16515.1 - 312.0 0.0 1.0 10.5 125.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074966 Or4f52 ENSMUST00000216421 ENSMUSP00000149730 TRANSLATION protein_coding - CCDS16515.1 5 312.0 0.0 1.0 10.5 125.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075093 Or4c1 ENSMUST00000216144 ENSMUSP00000150310 TRANSLATION protein_coding - CCDS16374.1 3 313.0 0.0 1.0 1.8 145.5 5.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075093 Or4c1 ENSMUST00000099786 ENSMUSP00000097374 TRANSLATION protein_coding - CCDS16374.1 - 313.0 0.0 1.0 1.8 145.5 5.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000027344 Fsip1 ENSMUST00000028821 ENSMUSP00000028821 TRANSLATION protein_coding - CCDS16573.1 1 435.0 0.0 0.0 0.1 508.1 0.0 -4,-6 1.0 3 2.0 PRINCIPAL:2 ENSMUSG00000027344 Fsip1 ENSMUST00000231133 ENSMUSP00000155242 TRANSLATION protein_coding - - - 593.0 0.0 0.0 0.0 508.1 0.0 -4,-6 0.1048 3 2.0 ALTERNATIVE:2 ENSMUSG00000027344 Fsip1 ENSMUST00000028820 ENSMUSP00000028820 TRANSLATION protein_coding - - 1 220.0 0.0 0.0 0.0 254.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000027344 Fsip1 ENSMUST00000231041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001403 Ube2c ENSMUST00000088248 ENSMUSP00000085581 TRANSLATION protein_coding - CCDS17055.1 1 179.0 0.0 3.53 22.2 153.1 0.0 -4,-7 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000001403 Ube2c ENSMUST00000001439 ENSMUSP00000001439 TRANSLATION protein_coding - - 1 171.0 0.0 3.162 0.0 149.6 0.0 -4,-7 0.0173 9 11.052 MINOR ENSMUSG00000045225 Or5w19 ENSMUST00000051058 ENSMUSP00000054645 TRANSLATION protein_coding - CCDS16313.1 - 310.0 0.0 1.0 13.4 156.1 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000045225 Or5w19 ENSMUST00000213308 ENSMUSP00000151045 TRANSLATION protein_coding - CCDS16313.1 5 310.0 0.0 1.0 13.4 156.1 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026930 Gpsm1 ENSMUST00000152895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026930 Gpsm1 ENSMUST00000132276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026930 Gpsm1 ENSMUST00000066889 ENSMUSP00000067964 TRANSLATION protein_coding - CCDS57159.1 1 705.0 0.0 8.97 0.1 259.1 0.0 -4,-6 0.311 14 12.0 MINOR ENSMUSG00000026930 Gpsm1 ENSMUST00000147873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026930 Gpsm1 ENSMUST00000145884 ENSMUSP00000115680 TRANSLATION protein_coding start - 1 497.0 0.0 6.22 0.0 198.6 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000026930 Gpsm1 ENSMUST00000142057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026930 Gpsm1 ENSMUST00000153064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026930 Gpsm1 ENSMUST00000127453 ENSMUSP00000120934 TRANSLATION protein_coding stop - 3 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026930 Gpsm1 ENSMUST00000078616 ENSMUSP00000077686 TRANSLATION protein_coding - CCDS57158.1 1 613.0 0.0 8.4075 1.1 259.1 0.0 -4,-5 0.2271 12 10.914 MINOR ENSMUSG00000026930 Gpsm1 ENSMUST00000123981 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026930 Gpsm1 ENSMUST00000114134 ENSMUSP00000109769 TRANSLATION protein_coding - - 3 236.0 0.0 1.12 0.7 156.8 0.0 -4,-5 0.0171 4 0.0 MINOR ENSMUSG00000026930 Gpsm1 ENSMUST00000066936 ENSMUSP00000065000 TRANSLATION protein_coding - CCDS15800.1 1 673.0 0.0 8.97 5.7 259.1 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000026930 Gpsm1 ENSMUST00000132638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068686 Cd59b ENSMUST00000111130 ENSMUSP00000106760 TRANSLATION protein_coding - CCDS16486.1 1 129.0 0.0 2.0 0.4 0.0 0.0 3,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000068686 Cd59b ENSMUST00000238272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068686 Cd59b ENSMUST00000111131 ENSMUSP00000106761 TRANSLATION protein_coding - - 1 88.0 0.0 1.0 0.0 0.0 0.0 3,-2 0.0868 1 3.0 MINOR ENSMUSG00000068686 Cd59b ENSMUST00000111132 ENSMUSP00000106762 TRANSLATION protein_coding - - 1 55.0 0.0 1.0 0.0 0.0 0.0 3,-2 0.0864 1 3.0 MINOR ENSMUSG00000068686 Cd59b ENSMUST00000249333 ENSMUSP00000159702 TRANSLATION protein_coding - - - 55.0 0.0 1.0 0.0 0.0 0.0 3,-2 0.0864 1 3.0 MINOR ENSMUSG00000068686 Cd59b ENSMUST00000129749 ENSMUSP00000117553 TRANSLATION protein_coding - CCDS16486.1 3 129.0 0.0 2.0 0.4 0.0 0.0 3,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000068686 Cd59b ENSMUST00000090429 ENSMUSP00000087912 TRANSLATION protein_coding - CCDS16486.1 5 129.0 0.0 2.0 0.4 0.0 0.0 3,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000017740 Slc12a5 ENSMUST00000125867 ENSMUSP00000144365 TRANSLATION nonsense_mediated_decay - - 3 59.0 0.0 0.0 0.0 0.0 0.0 -2,1 0.0004 1 -2.0 MINOR ENSMUSG00000017740 Slc12a5 ENSMUST00000208579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017740 Slc12a5 ENSMUST00000202479 ENSMUSP00000144540 TRANSLATION protein_coding - - 5 231.0 0.0 2.03 0.0 38.4 6.0 -4,-5 0.0022 2 0.0 MINOR ENSMUSG00000017740 Slc12a5 ENSMUST00000135918 - NO_TRANSLATION retained_intron ENSMUSG00000017740 Slc12a5 ENSMUST00000124372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017740 Slc12a5 ENSMUST00000202223 ENSMUSP00000143870 TRANSLATION protein_coding - - 1 1133.0 0.0 19.37 6.0 382.6 9.0 -2,1 0.6906 23 7.923 ALTERNATIVE:1 ENSMUSG00000017740 Slc12a5 ENSMUST00000099092 ENSMUSP00000096690 TRANSLATION protein_coding - CCDS38332.1 1 1115.0 0.0 19.37 8.8 382.8 9.0 -4,-5 1.0 24 9.0 PRINCIPAL:2 ENSMUSG00000017740 Slc12a5 ENSMUST00000202136 ENSMUSP00000143973 TRANSLATION nonsense_mediated_decay - - 5 186.0 0.0 2.03 0.0 39.4 6.0 -4,-5 0.0022 2 -2.0 MINOR ENSMUSG00000017740 Slc12a5 ENSMUST00000137302 - NO_TRANSLATION retained_intron ENSMUSG00000017740 Slc12a5 ENSMUST00000202623 ENSMUSP00000144623 TRANSLATION protein_coding - - 1 1138.0 0.0 19.37 6.0 382.8 9.0 -2,1 0.694 25 7.923 ALTERNATIVE:1 ENSMUSG00000083706 Or10ag56 ENSMUST00000121296 ENSMUSP00000144143 TRANSLATION protein_coding - CCDS38175.1 - 307.0 0.0 1.0 0.8 179.0 7.0 -2,-5 0.5314 - 8.0 ALTERNATIVE:2 ENSMUSG00000083706 Or10ag56 ENSMUST00000216396 ENSMUSP00000150394 TRANSLATION protein_coding - - 5 327.0 0.0 1.0 0.0 179.0 7.0 -4,-7 0.8184 - 8.0 PRINCIPAL:2 ENSMUSG00000075188 Or8k23 ENSMUST00000216547 ENSMUSP00000149545 TRANSLATION protein_coding - CCDS16252.1 5 313.0 0.0 1.0 12.5 158.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075188 Or8k23 ENSMUST00000099893 ENSMUSP00000097478 TRANSLATION protein_coding - CCDS16252.1 - 313.0 0.0 1.0 12.5 158.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027194 Ttc17 ENSMUST00000150266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027194 Ttc17 ENSMUST00000055081 ENSMUSP00000061360 TRANSLATION protein_coding - - 1 625.0 0.0 1.2675 0.0 14.0 0.0 -4,-5 0.0324 4 8.82 MINOR ENSMUSG00000027194 Ttc17 ENSMUST00000111237 ENSMUSP00000106868 TRANSLATION protein_coding - - 5 1141.0 0.0 1.2675 6.6 29.8 0.0 0,-4 0.6946 9 13.887 MINOR ENSMUSG00000027194 Ttc17 ENSMUST00000094801 ENSMUSP00000092395 TRANSLATION protein_coding - - 5 956.0 0.0 0.0 5.9 29.8 0.0 0,-4 0.5971 6 7.653 MINOR ENSMUSG00000027194 Ttc17 ENSMUST00000111238 ENSMUSP00000106869 TRANSLATION protein_coding - CCDS38185.1 5 1198.0 0.0 1.2675 9.9 29.8 0.0 0,-4 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000027194 Ttc17 ENSMUST00000150215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026928 Card9 ENSMUST00000153370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026928 Card9 ENSMUST00000028294 ENSMUSP00000028294 TRANSLATION protein_coding - CCDS38084.1 5 536.0 0.0 2.6 7.8 68.4 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000026928 Card9 ENSMUST00000100303 ENSMUSP00000097876 TRANSLATION protein_coding - CCDS38084.1 1 536.0 0.0 2.6 7.8 68.4 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000027575 Arfgap1 ENSMUST00000029092 ENSMUSP00000029092 TRANSLATION protein_coding - CCDS17190.1 1 414.0 4.0 5.15 6.9 113.7 0.0 -4,-7 1.0 14 14.0 PRINCIPAL:3 ENSMUSG00000027575 Arfgap1 ENSMUST00000132627 - NO_TRANSLATION retained_intron ENSMUSG00000027575 Arfgap1 ENSMUST00000108861 ENSMUSP00000104489 TRANSLATION protein_coding - CCDS50842.1 1 394.0 4.0 5.15 5.8 113.7 0.0 -4,-7 0.8959 13 13.628 ALTERNATIVE:1 ENSMUSG00000027575 Arfgap1 ENSMUST00000136590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027575 Arfgap1 ENSMUST00000150507 - NO_TRANSLATION retained_intron ENSMUSG00000027575 Arfgap1 ENSMUST00000138706 - NO_TRANSLATION retained_intron ENSMUSG00000027575 Arfgap1 ENSMUST00000145629 - NO_TRANSLATION retained_intron ENSMUSG00000027575 Arfgap1 ENSMUST00000184394 ENSMUSP00000138843 TRANSLATION protein_coding - - 5 402.0 4.0 5.15 4.0 113.7 0.0 -4,-7 0.6422 14 13.016 ALTERNATIVE:2 ENSMUSG00000027575 Arfgap1 ENSMUST00000108862 ENSMUSP00000104490 TRANSLATION protein_coding - CCDS50842.1 1 394.0 4.0 5.15 5.8 113.7 0.0 -4,-7 0.8959 13 13.628 ALTERNATIVE:1 ENSMUSG00000027575 Arfgap1 ENSMUST00000134519 - NO_TRANSLATION retained_intron ENSMUSG00000027575 Arfgap1 ENSMUST00000108860 ENSMUSP00000104488 TRANSLATION protein_coding - CCDS50843.1 1 392.0 4.0 5.15 5.8 113.7 0.0 -4,-7 0.8965 13 13.628 ALTERNATIVE:1 ENSMUSG00000027575 Arfgap1 ENSMUST00000148908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027575 Arfgap1 ENSMUST00000185115 ENSMUSP00000139222 TRANSLATION protein_coding - - 5 424.0 4.0 5.15 0.0 113.7 0.0 -4,-7 0.0786 15 12.0 MINOR ENSMUSG00000027575 Arfgap1 ENSMUST00000108859 ENSMUSP00000104487 TRANSLATION protein_coding - CCDS50843.1 1 392.0 4.0 5.15 5.8 113.7 0.0 -4,-7 0.8965 13 13.628 ALTERNATIVE:1 ENSMUSG00000027374 Mrps5 ENSMUST00000028852 ENSMUSP00000028852 TRANSLATION protein_coding - CCDS16706.1 1 432.0 0.0 7.66 8.0 137.0 0.0 -3,-1 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000027374 Mrps5 ENSMUST00000146131 ENSMUSP00000119674 TRANSLATION protein_coding stop - 3 139.0 0.0 1.33 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000027374 Mrps5 ENSMUST00000145271 - NO_TRANSLATION retained_intron ENSMUSG00000027374 Mrps5 ENSMUST00000129066 - NO_TRANSLATION retained_intron ENSMUSG00000027374 Mrps5 ENSMUST00000128535 - NO_TRANSLATION retained_intron ENSMUSG00000027374 Mrps5 ENSMUST00000126491 - NO_TRANSLATION retained_intron ENSMUSG00000027374 Mrps5 ENSMUST00000134101 - NO_TRANSLATION retained_intron ENSMUSG00000059842 Zfp341 ENSMUST00000126421 ENSMUSP00000117383 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059842 Zfp341 ENSMUST00000109702 ENSMUSP00000105324 TRANSLATION protein_coding - - 5 839.0 43.0 4.78 0.4 158.6 0.0 -4,-5 0.2184 - 13.67 ALTERNATIVE:2 ENSMUSG00000059842 Zfp341 ENSMUST00000081926 ENSMUSP00000080596 TRANSLATION protein_coding - CCDS16937.1 1 846.0 43.0 4.945 0.4 158.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000075169 Or8h8 ENSMUST00000111574 ENSMUSP00000107200 TRANSLATION protein_coding - CCDS38174.1 3 315.0 0.0 1.0 0.0 175.0 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075169 Or8h8 ENSMUST00000099872 ENSMUSP00000097457 TRANSLATION protein_coding - CCDS38174.1 - 315.0 0.0 1.0 0.0 175.0 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000118663 Afg2b ENSMUST00000239507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118663 Afg2b ENSMUST00000239506 ENSMUSP00000159384 TRANSLATION protein_coding - - - 747.0 28.0 4.78 4.2 243.4 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000075206 Or5m12 ENSMUST00000099912 ENSMUSP00000097496 TRANSLATION protein_coding - CCDS16227.1 - 327.0 0.0 1.0 1.0 173.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027223 Mapk8ip1 ENSMUST00000111279 ENSMUSP00000106910 TRANSLATION protein_coding - CCDS57180.1 1 698.0 0.0 4.15 6.5 170.9 0.0 -4,-5 0.927 10 9.896 ALTERNATIVE:1 ENSMUSG00000027223 Mapk8ip1 ENSMUST00000149653 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027223 Mapk8ip1 ENSMUST00000050312 ENSMUSP00000050773 TRANSLATION protein_coding - CCDS16446.1 1 707.0 0.0 4.15 6.8 170.9 0.0 -4,-6 1.0 10 10.0 PRINCIPAL:4 ENSMUSG00000075163 Or5aq1b ENSMUST00000214049 ENSMUSP00000150135 TRANSLATION protein_coding - CCDS16279.1 5 312.0 0.0 1.0 16.0 177.6 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075163 Or5aq1b ENSMUST00000099865 ENSMUSP00000097450 TRANSLATION protein_coding - CCDS16279.1 - 312.0 0.0 1.0 16.0 177.6 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026924 Sec16a ENSMUST00000154486 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026924 Sec16a ENSMUST00000148306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026924 Sec16a ENSMUST00000149010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026924 Sec16a ENSMUST00000091252 ENSMUSP00000088796 TRANSLATION protein_coding - CCDS38085.1 5 2357.0 0.0 0.0 0.0 31.0 0.0 -4,-7 0.7877 44 0.0 ALTERNATIVE:2 ENSMUSG00000026924 Sec16a ENSMUST00000153996 ENSMUSP00000121179 TRANSLATION protein_coding start/stop - 3 247.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 1 -2.0 MINOR ENSMUSG00000026924 Sec16a ENSMUST00000155252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026924 Sec16a ENSMUST00000114082 ENSMUSP00000109716 TRANSLATION protein_coding - - 5 2377.0 0.0 0.0 0.0 31.0 0.0 -4,-7 0.9079 46 0.0 PRINCIPAL:3 ENSMUSG00000026924 Sec16a ENSMUST00000156442 ENSMUSP00000122255 TRANSLATION protein_coding start - 1 907.0 0.0 0.0 0.0 31.0 0.0 -4,-7 0.1476 23 -2.0 MINOR ENSMUSG00000027460 Angpt4 ENSMUST00000028955 ENSMUSP00000028955 TRANSLATION protein_coding - CCDS16874.1 1 509.0 6.0 5.12 0.4 228.1 0.0 4,-1 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000074698 Csnk2a1 ENSMUST00000136063 - NO_TRANSLATION retained_intron ENSMUSG00000074698 Csnk2a1 ENSMUST00000133119 ENSMUSP00000116853 TRANSLATION protein_coding stop - 5 77.0 10.0 2.33 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000074698 Csnk2a1 ENSMUST00000099224 ENSMUSP00000096829 TRANSLATION protein_coding - CCDS16879.1 1 391.0 20.0 9.83 34.9 243.5 0.0 -4,-7 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000074698 Csnk2a1 ENSMUST00000124791 ENSMUSP00000122505 TRANSLATION protein_coding stop - 3 131.0 17.0 4.0 0.0 62.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000074698 Csnk2a1 ENSMUST00000141597 - NO_TRANSLATION retained_intron ENSMUSG00000014959 Gorasp2 ENSMUST00000112205 ENSMUSP00000107824 TRANSLATION protein_coding - - 1 351.0 0.0 5.25 0.0 182.6 0.0 -4,-5 0.0262 6 12.0 MINOR ENSMUSG00000014959 Gorasp2 ENSMUST00000112201 ENSMUSP00000107820 TRANSLATION protein_coding - - 1 431.0 0.0 4.5 0.0 179.6 0.0 -4,-5 0.0205 8 10.32 MINOR ENSMUSG00000014959 Gorasp2 ENSMUST00000028509 ENSMUSP00000028509 TRANSLATION protein_coding - CCDS16109.1 1 451.0 0.0 5.25 4.8 182.6 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000014959 Gorasp2 ENSMUST00000133432 ENSMUSP00000121549 TRANSLATION protein_coding - - 1 317.0 0.0 5.25 0.0 182.6 0.0 -4,-5 0.026 6 12.0 MINOR ENSMUSG00000014959 Gorasp2 ENSMUST00000130970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014959 Gorasp2 ENSMUST00000136485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017950 Hnf4a ENSMUST00000143911 ENSMUSP00000119479 TRANSLATION protein_coding stop - 1 100.0 8.0 1.75 0.0 98.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000017950 Hnf4a ENSMUST00000131658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017950 Hnf4a ENSMUST00000018094 ENSMUSP00000018094 TRANSLATION protein_coding - CCDS17012.1 1 474.0 8.0 6.98 8.2 242.0 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000017950 Hnf4a ENSMUST00000137449 ENSMUSP00000123511 TRANSLATION protein_coding stop - 3 191.0 8.0 3.88 0.0 131.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000017950 Hnf4a ENSMUST00000109411 ENSMUSP00000105038 TRANSLATION protein_coding - - 1 465.0 8.0 6.98 0.0 242.0 0.0 -4,-5 0.0819 4 18.0 MINOR ENSMUSG00000050737 Ptges ENSMUST00000102852 ENSMUSP00000099916 TRANSLATION protein_coding - CCDS15889.1 1 153.0 0.0 2.75 9.2 81.7 0.0 -2,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000050737 Ptges ENSMUST00000132244 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050737 Ptges ENSMUST00000056046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050737 Ptges ENSMUST00000126588 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014867 Surf4 ENSMUST00000015011 ENSMUSP00000015011 TRANSLATION protein_coding - CCDS15817.1 1 269.0 0.0 0.0 27.3 428.6 7.0 -4,-6 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000014867 Surf4 ENSMUST00000153641 ENSMUSP00000124720 TRANSLATION nonsense_mediated_decay - - 5 82.0 0.0 0.0 0.0 106.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000014867 Surf4 ENSMUST00000154651 ENSMUSP00000125327 TRANSLATION protein_coding start/stop - 5 124.0 0.0 0.0 0.0 138.7 2.0 -4,-7 0.0016 2 -2.0 MINOR ENSMUSG00000101918 Or4c120 ENSMUST00000216961 ENSMUSP00000149236 TRANSLATION protein_coding - CCDS16369.1 5 311.0 0.0 1.0 8.3 159.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101918 Or4c120 ENSMUST00000217054 ENSMUSP00000150915 TRANSLATION protein_coding - CCDS16369.1 5 311.0 0.0 1.0 8.3 159.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101918 Or4c120 ENSMUST00000188861 ENSMUSP00000140442 TRANSLATION protein_coding - CCDS16369.1 - 311.0 0.0 1.0 8.3 159.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040812 Agbl2 ENSMUST00000170320 ENSMUSP00000129216 TRANSLATION protein_coding - CCDS38177.2 1 862.0 5.0 7.6 0.0 60.7 0.0 -3,-5 0.3678 - 11.0 ALTERNATIVE:2 ENSMUSG00000040812 Agbl2 ENSMUST00000149361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040812 Agbl2 ENSMUST00000037206 ENSMUSP00000047936 TRANSLATION protein_coding - - 1 809.0 5.0 7.6 0.1 60.7 0.0 -4,-5 0.7342 - 11.0 PRINCIPAL:2 ENSMUSG00000040812 Agbl2 ENSMUST00000051831 ENSMUSP00000051620 TRANSLATION nonsense_mediated_decay - - 1 836.0 5.0 7.6 0.0 61.2 0.0 -3,-5 0.1736 - -2.0 MINOR ENSMUSG00000040812 Agbl2 ENSMUST00000149037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040812 Agbl2 ENSMUST00000136058 ENSMUSP00000115632 TRANSLATION protein_coding stop - 1 711.0 5.0 7.6 0.0 61.2 0.0 -4,-5 0.077 - -2.0 MINOR ENSMUSG00000040812 Agbl2 ENSMUST00000037219 ENSMUSP00000048647 TRANSLATION protein_coding - CCDS38177.2 1 862.0 5.0 7.6 0.0 60.7 0.0 -3,-5 0.3678 - 11.0 ALTERNATIVE:2 ENSMUSG00000040812 Agbl2 ENSMUST00000111481 ENSMUSP00000107106 TRANSLATION protein_coding - CCDS38177.2 5 862.0 5.0 7.6 0.0 60.7 0.0 -3,-5 0.3678 - 11.0 ALTERNATIVE:2 ENSMUSG00000026843 Fubp3 ENSMUST00000129903 ENSMUSP00000117970 TRANSLATION protein_coding start - 5 264.0 0.0 2.75 0.0 83.8 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000026843 Fubp3 ENSMUST00000150473 ENSMUSP00000123589 TRANSLATION protein_coding start - 5 104.0 0.0 0.0 0.0 44.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026843 Fubp3 ENSMUST00000130578 ENSMUSP00000141386 TRANSLATION protein_coding start - 5 52.0 0.0 0.0 0.0 23.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026843 Fubp3 ENSMUST00000055244 ENSMUSP00000053474 TRANSLATION protein_coding - CCDS15899.1 1 575.0 0.0 8.406 0.4 287.1 0.0 -4,-5 0.2984 24 12.0 MINOR ENSMUSG00000026843 Fubp3 ENSMUST00000154050 ENSMUSP00000141873 TRANSLATION nonsense_mediated_decay - - 5 83.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026843 Fubp3 ENSMUST00000134553 ENSMUSP00000141283 TRANSLATION nonsense_mediated_decay start - 5 191.0 0.0 3.964 0.0 113.7 0.0 -4,-7 0.0 10 -2.0 MINOR ENSMUSG00000026843 Fubp3 ENSMUST00000137889 ENSMUSP00000120241 TRANSLATION protein_coding stop - 2 97.0 0.0 0.792 0.0 20.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000026843 Fubp3 ENSMUST00000194386 ENSMUSP00000142262 TRANSLATION protein_coding stop - 3 123.0 0.0 1.396 0.0 42.4 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026843 Fubp3 ENSMUST00000113482 ENSMUSP00000109110 TRANSLATION protein_coding - CCDS71025.1 1 569.0 0.0 8.406 11.8 287.1 0.0 -4,-5 1.0 25 15.0 PRINCIPAL:1 ENSMUSG00000026843 Fubp3 ENSMUST00000132534 - NO_TRANSLATION retained_intron ENSMUSG00000026843 Fubp3 ENSMUST00000137504 - NO_TRANSLATION retained_intron ENSMUSG00000034683 Ppp1r1c ENSMUST00000090760 ENSMUSP00000088265 TRANSLATION protein_coding - CCDS16171.1 1 108.0 0.0 0.75 19.9 106.7 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000034683 Ppp1r1c ENSMUST00000144432 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034683 Ppp1r1c ENSMUST00000040863 ENSMUSP00000042784 TRANSLATION protein_coding - CCDS79810.1 1 76.0 0.0 0.75 0.0 75.7 0.0 -4,-6 0.0843 2 10.14 MINOR ENSMUSG00000034683 Ppp1r1c ENSMUST00000141978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034683 Ppp1r1c ENSMUST00000111780 ENSMUSP00000107410 TRANSLATION protein_coding - CCDS71081.1 1 91.0 0.0 0.75 0.3 103.9 0.0 -4,-6 0.1576 4 11.832 MINOR ENSMUSG00000041777 Cir1 ENSMUST00000136519 - NO_TRANSLATION retained_intron ENSMUSG00000041777 Cir1 ENSMUST00000058615 ENSMUSP00000049834 TRANSLATION protein_coding - CCDS16127.1 1 450.0 4.0 1.375 0.1 54.5 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000042662 Dusp15 ENSMUST00000123121 ENSMUSP00000123090 TRANSLATION protein_coding - CCDS50754.1 3 235.0 10.0 4.43 8.0 105.6 0.0 -4,-6 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000042662 Dusp15 ENSMUST00000185197 - NO_TRANSLATION retained_intron ENSMUSG00000042662 Dusp15 ENSMUST00000037715 ENSMUSP00000045815 TRANSLATION protein_coding - CCDS16902.1 1 105.0 2.0 3.23 0.0 42.1 0.0 -4,-6 0.0004 4 6.456 MINOR ENSMUSG00000042662 Dusp15 ENSMUST00000109811 ENSMUSP00000105436 TRANSLATION protein_coding - - 1 78.0 0.0 0.33 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000017754 Pltp ENSMUST00000142603 - NO_TRANSLATION retained_intron ENSMUSG00000017754 Pltp ENSMUST00000128110 ENSMUSP00000122760 TRANSLATION protein_coding stop - 2 147.0 0.0 3.4 0.0 79.3 0.0 4,-1 0.0 2 -2.0 MINOR ENSMUSG00000017754 Pltp ENSMUST00000148912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017754 Pltp ENSMUST00000156255 ENSMUSP00000119955 TRANSLATION protein_coding stop - 5 165.0 0.0 3.95 0.0 107.4 0.0 2,-2 0.0 3 -2.0 MINOR ENSMUSG00000017754 Pltp ENSMUST00000059954 ENSMUSP00000061519 TRANSLATION protein_coding - CCDS17063.1 1 493.0 0.0 12.0 1.0 359.4 0.0 4,-1 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000017754 Pltp ENSMUST00000109317 ENSMUSP00000104940 TRANSLATION protein_coding - - 5 441.0 0.0 10.6 0.0 290.8 0.0 4,-1 0.0184 10 5.082 MINOR ENSMUSG00000017754 Pltp ENSMUST00000109316 ENSMUSP00000104939 TRANSLATION protein_coding - CCDS17063.1 1 493.0 0.0 12.0 1.0 359.4 0.0 4,-1 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000051424 Or4p22 ENSMUST00000050038 ENSMUSP00000058679 TRANSLATION protein_coding - CCDS16338.1 - 311.0 0.0 1.0 12.8 160.2 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051424 Or4p22 ENSMUST00000216675 ENSMUSP00000149649 TRANSLATION protein_coding - CCDS16338.1 5 311.0 0.0 1.0 12.8 160.2 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027327 Adissp ENSMUST00000152961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027327 Adissp ENSMUST00000103188 ENSMUSP00000099477 TRANSLATION protein_coding - CCDS16756.1 1 174.0 0.0 3.0 21.0 174.6 0.0 -4,-2 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000027327 Adissp ENSMUST00000184535 ENSMUSP00000138853 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 0.2 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000027327 Adissp ENSMUST00000136838 - NO_TRANSLATION retained_intron ENSMUSG00000027327 Adissp ENSMUST00000184121 ENSMUSP00000139314 TRANSLATION nonsense_mediated_decay - - 3 50.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000027327 Adissp ENSMUST00000133602 ENSMUSP00000115000 TRANSLATION protein_coding stop - 5 141.0 0.0 2.0 0.0 113.3 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000027327 Adissp ENSMUST00000028800 ENSMUSP00000028800 TRANSLATION protein_coding - CCDS79849.1 1 177.0 0.0 3.0 16.0 174.6 0.0 -4,-1 0.9408 6 11.0 ALTERNATIVE:1 ENSMUSG00000026986 Hnmt ENSMUST00000051416 ENSMUSP00000062747 TRANSLATION protein_coding - CCDS15731.1 1 295.0 14.0 5.5 24.2 0.0 0.0 -4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026986 Hnmt ENSMUST00000114497 ENSMUSP00000110141 TRANSLATION protein_coding - CCDS15731.1 1 295.0 14.0 5.5 24.2 0.0 0.0 -4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026986 Hnmt ENSMUST00000114498 ENSMUSP00000110142 TRANSLATION protein_coding - CCDS15731.1 1 295.0 14.0 5.5 24.2 0.0 0.0 -4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000068264 Ap5s1 ENSMUST00000134086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068264 Ap5s1 ENSMUST00000089506 ENSMUSP00000086933 TRANSLATION protein_coding - CCDS16759.1 1 248.0 0.0 0.0 0.0 164.1 0.0 -4,-6 0.0239 2 1.932 MINOR ENSMUSG00000068264 Ap5s1 ENSMUST00000153097 ENSMUSP00000121488 TRANSLATION protein_coding stop - 3 99.0 0.0 0.0 0.0 98.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000068264 Ap5s1 ENSMUST00000153901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068264 Ap5s1 ENSMUST00000110206 ENSMUSP00000105835 TRANSLATION protein_coding - - 3 118.0 0.0 0.0 0.1 51.7 0.0 -4,-6 0.0 2 0.0 MINOR ENSMUSG00000068264 Ap5s1 ENSMUST00000110208 ENSMUSP00000105837 TRANSLATION protein_coding - CCDS71148.1 1 200.0 0.0 0.0 14.5 231.9 0.0 -4,-6 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000068264 Ap5s1 ENSMUST00000143546 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068264 Ap5s1 ENSMUST00000110210 ENSMUSP00000105839 TRANSLATION protein_coding - CCDS71147.1 1 170.0 0.0 0.0 0.0 166.4 0.0 -4,-6 0.0232 2 2.07 MINOR ENSMUSG00000075334 Rprm ENSMUST00000100089 ENSMUSP00000097667 TRANSLATION protein_coding - CCDS16040.1 - 109.0 0.0 0.4 36.9 0.0 0.0 -4,-7 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000083855 Or5d45 ENSMUST00000214207 ENSMUSP00000154642 TRANSLATION protein_coding - - 5 320.0 0.0 1.0 0.7 158.8 0.0 -4,-7 0.7721 - 12.0 PRINCIPAL:1 ENSMUSG00000039157 Eeig1 ENSMUST00000136816 - NO_TRANSLATION retained_intron ENSMUSG00000039157 Eeig1 ENSMUST00000048375 ENSMUSP00000044731 TRANSLATION protein_coding - CCDS15917.1 1 392.0 0.0 4.58 5.6 101.2 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000039157 Eeig1 ENSMUST00000147723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039157 Eeig1 ENSMUST00000133512 ENSMUSP00000116809 TRANSLATION protein_coding stop - 3 34.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039157 Eeig1 ENSMUST00000133366 ENSMUSP00000118624 TRANSLATION protein_coding stop - 5 73.0 0.0 2.25 0.0 49.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000061171 Slc38a11 ENSMUST00000112420 ENSMUSP00000108039 TRANSLATION protein_coding - CCDS38129.1 1 453.0 0.0 9.0 0.0 217.2 27.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000061171 Slc38a11 ENSMUST00000152324 ENSMUSP00000121205 TRANSLATION protein_coding stop - 1 375.0 0.0 8.0 0.0 191.3 22.0 -4,-5 0.0134 - -2.0 MINOR ENSMUSG00000061171 Slc38a11 ENSMUST00000145583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061171 Slc38a11 ENSMUST00000155422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061171 Slc38a11 ENSMUST00000124918 ENSMUSP00000120185 TRANSLATION protein_coding start - 5 414.0 0.0 8.25 0.0 164.0 23.0 -4,-5 0.0071 - -2.0 MINOR ENSMUSG00000061171 Slc38a11 ENSMUST00000155962 ENSMUSP00000118837 TRANSLATION protein_coding start/stop - 5 205.0 0.0 4.25 0.0 97.8 13.0 -4,-5 0.0063 - -2.0 MINOR ENSMUSG00000061171 Slc38a11 ENSMUST00000141690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061171 Slc38a11 ENSMUST00000127623 ENSMUSP00000120737 TRANSLATION protein_coding start - 5 378.0 0.0 8.25 0.0 150.4 23.0 -3,-5 0.0058 - -2.0 MINOR ENSMUSG00000012350 Ehf ENSMUST00000140503 ENSMUSP00000114979 TRANSLATION protein_coding stop - 5 181.0 0.0 0.6 0.0 91.3 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000012350 Ehf ENSMUST00000111176 ENSMUSP00000106807 TRANSLATION protein_coding - - 5 277.0 0.0 3.225 1.0 204.3 0.0 -4,-5 0.0927 3 11.25 MINOR ENSMUSG00000012350 Ehf ENSMUST00000090475 ENSMUSP00000087961 TRANSLATION protein_coding - CCDS16475.1 1 300.0 0.0 3.6 23.4 204.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000012350 Ehf ENSMUST00000151265 ENSMUSP00000118275 TRANSLATION protein_coding stop - 3 127.0 0.0 0.6 0.0 92.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000012350 Ehf ENSMUST00000137774 - NO_TRANSLATION retained_intron ENSMUSG00000012350 Ehf ENSMUST00000125788 ENSMUSP00000121103 TRANSLATION protein_coding stop - 3 242.0 0.0 1.6 0.0 91.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000012350 Ehf ENSMUST00000128546 - NO_TRANSLATION retained_intron ENSMUSG00000012350 Ehf ENSMUST00000111174 ENSMUSP00000106805 TRANSLATION protein_coding - CCDS16475.1 1 300.0 0.0 3.6 23.4 204.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000068008 Bpifb3 ENSMUST00000109760 ENSMUSP00000105382 TRANSLATION protein_coding - CCDS16921.1 5 473.0 0.0 4.614 6.8 188.4 0.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000068008 Bpifb3 ENSMUST00000088950 ENSMUSP00000086342 TRANSLATION protein_coding - CCDS16921.1 1 473.0 0.0 4.614 6.8 188.4 0.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000061342 Or5d40 ENSMUST00000079599 ENSMUSP00000078549 TRANSLATION protein_coding - CCDS16328.1 - 312.0 0.0 1.0 2.8 160.4 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000061342 Or5d40 ENSMUST00000215996 ENSMUSP00000149517 TRANSLATION protein_coding - CCDS16328.1 3 312.0 0.0 1.0 2.8 160.4 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000017664 Slc35c2 ENSMUST00000155289 ENSMUSP00000119071 TRANSLATION protein_coding stop - 5 199.0 0.0 5.25 0.0 38.0 15.0 0,-4 0.0029 2 -2.0 MINOR ENSMUSG00000017664 Slc35c2 ENSMUST00000130393 ENSMUSP00000123450 TRANSLATION protein_coding stop - 3 58.0 0.0 1.5 0.0 0.0 5.0 0,-4 0.0023 - -2.0 MINOR ENSMUSG00000017664 Slc35c2 ENSMUST00000145301 ENSMUSP00000123757 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 1.0 0.0 0.0 4.0 0,-4 0.0023 - -2.0 MINOR ENSMUSG00000017664 Slc35c2 ENSMUST00000154608 - NO_TRANSLATION retained_intron ENSMUSG00000017664 Slc35c2 ENSMUST00000156134 ENSMUSP00000116288 TRANSLATION protein_coding stop - 2 192.0 0.0 5.0 0.0 54.9 16.0 0,-4 0.0029 2 -2.0 MINOR ENSMUSG00000017664 Slc35c2 ENSMUST00000109298 ENSMUSP00000104921 TRANSLATION protein_coding - CCDS17074.1 1 364.0 0.0 8.75 10.9 87.7 20.0 0,-4 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000017664 Slc35c2 ENSMUST00000125550 - NO_TRANSLATION retained_intron ENSMUSG00000017664 Slc35c2 ENSMUST00000109299 ENSMUSP00000104922 TRANSLATION protein_coding - CCDS17074.1 1 364.0 0.0 8.75 10.9 87.7 20.0 0,-4 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000017664 Slc35c2 ENSMUST00000147247 - NO_TRANSLATION retained_intron ENSMUSG00000017664 Slc35c2 ENSMUST00000133961 ENSMUSP00000118227 TRANSLATION protein_coding stop - 3 192.0 0.0 5.0 0.0 54.9 16.0 0,-4 0.0029 2 -2.0 MINOR ENSMUSG00000017664 Slc35c2 ENSMUST00000129336 ENSMUSP00000123299 TRANSLATION protein_coding stop - 5 196.0 0.0 2.75 0.0 0.0 10.0 0,-4 0.0023 1 -2.0 MINOR ENSMUSG00000017664 Slc35c2 ENSMUST00000017808 ENSMUSP00000017808 TRANSLATION protein_coding - CCDS17074.1 1 364.0 0.0 8.75 10.9 87.7 20.0 0,-4 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000017664 Slc35c2 ENSMUST00000109300 ENSMUSP00000104923 TRANSLATION protein_coding - CCDS17074.1 1 364.0 0.0 8.75 10.9 87.7 20.0 0,-4 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000017664 Slc35c2 ENSMUST00000129210 ENSMUSP00000118605 TRANSLATION protein_coding stop - 5 163.0 0.0 4.25 0.0 47.2 15.0 0,-4 0.0021 1 -2.0 MINOR ENSMUSG00000017664 Slc35c2 ENSMUST00000131409 ENSMUSP00000120036 TRANSLATION protein_coding stop - 3 137.0 0.0 2.75 0.0 0.0 10.0 0,-4 0.0023 1 -2.0 MINOR ENSMUSG00000017664 Slc35c2 ENSMUST00000132270 ENSMUSP00000125708 TRANSLATION nonsense_mediated_decay - - 1 72.0 0.0 1.0 0.0 0.0 4.0 0,-4 0.0023 - -2.0 MINOR ENSMUSG00000027368 Dusp2 ENSMUST00000146479 - NO_TRANSLATION retained_intron ENSMUSG00000027368 Dusp2 ENSMUST00000028846 ENSMUSP00000028846 TRANSLATION protein_coding - CCDS16699.1 1 318.0 8.0 2.52 0.8 186.3 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000027582 Zgpat ENSMUST00000156258 ENSMUSP00000122714 TRANSLATION protein_coding start - 3 185.0 0.0 0.0 0.0 45.6 0.0 -4,-6 0.0212 3 -2.0 MINOR ENSMUSG00000027582 Zgpat ENSMUST00000151457 - NO_TRANSLATION retained_intron ENSMUSG00000027582 Zgpat ENSMUST00000131284 - NO_TRANSLATION retained_intron ENSMUSG00000027582 Zgpat ENSMUST00000108807 ENSMUSP00000104435 TRANSLATION protein_coding - CCDS17210.1 1 511.0 4.0 2.6 4.7 45.3 0.0 -4,-5 1.0 6 17.958 PRINCIPAL:1 ENSMUSG00000027582 Zgpat ENSMUST00000116366 ENSMUSP00000112067 TRANSLATION nonsense_mediated_decay - CCDS17210.1 2 511.0 4.0 2.6 4.7 45.3 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000027582 Zgpat ENSMUST00000029105 ENSMUSP00000029105 TRANSLATION protein_coding - CCDS17210.1 1 511.0 4.0 2.6 4.7 45.3 0.0 -4,-5 1.0 6 17.958 PRINCIPAL:1 ENSMUSG00000026890 Lhx6 ENSMUST00000187180 - NO_TRANSLATION retained_intron ENSMUSG00000026890 Lhx6 ENSMUST00000136821 ENSMUSP00000135776 TRANSLATION protein_coding start - 3 170.0 0.0 2.75 0.0 71.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026890 Lhx6 ENSMUST00000112961 ENSMUSP00000108585 TRANSLATION protein_coding - CCDS38113.1 1 363.0 15.0 4.75 6.4 181.5 0.0 -4,-6 0.785 - 19.722 MINOR ENSMUSG00000026890 Lhx6 ENSMUST00000112960 ENSMUSP00000108584 TRANSLATION protein_coding - CCDS38112.1 2 392.0 15.0 4.75 10.4 181.5 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000026890 Lhx6 ENSMUST00000112963 ENSMUSP00000108587 TRANSLATION protein_coding - CCDS38113.1 2 363.0 15.0 4.75 6.4 181.5 0.0 -4,-6 0.785 - 19.722 MINOR ENSMUSG00000026890 Lhx6 ENSMUST00000137436 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026890 Lhx6 ENSMUST00000148852 ENSMUSP00000135693 TRANSLATION protein_coding - CCDS38111.1 5 348.0 15.0 4.75 2.4 181.5 0.0 -4,-6 0.3184 - 18.447 MINOR ENSMUSG00000026890 Lhx6 ENSMUST00000112967 ENSMUSP00000108591 TRANSLATION protein_coding - CCDS38110.1 1 377.0 15.0 4.75 4.9 181.5 0.0 -4,-5 0.7581 - 19.245 MINOR ENSMUSG00000026890 Lhx6 ENSMUST00000112966 ENSMUSP00000108590 TRANSLATION protein_coding - CCDS38111.1 1 348.0 15.0 4.75 2.4 181.5 0.0 -4,-6 0.3184 - 18.447 MINOR ENSMUSG00000026657 Frmd4a ENSMUST00000123919 - NO_TRANSLATION retained_intron ENSMUSG00000026657 Frmd4a ENSMUST00000175669 ENSMUSP00000135306 TRANSLATION protein_coding stop - 5 387.0 0.0 5.483 0.0 214.5 0.0 -4,-2 0.0327 8 -2.0 MINOR ENSMUSG00000026657 Frmd4a ENSMUST00000115039 - NO_TRANSLATION retained_intron ENSMUSG00000026657 Frmd4a ENSMUST00000137809 - NO_TRANSLATION retained_intron ENSMUSG00000026657 Frmd4a ENSMUST00000176828 ENSMUSP00000134803 TRANSLATION protein_coding - CCDS57151.1 1 737.0 0.0 0.165 0.8 199.4 0.0 -4,-7 0.0651 10 0.0 MINOR ENSMUSG00000026657 Frmd4a ENSMUST00000138735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026657 Frmd4a ENSMUST00000177457 ENSMUSP00000134788 TRANSLATION protein_coding - CCDS84466.1 5 1035.0 0.0 5.483 2.0 413.9 0.0 -4,-6 0.6105 18 12.267 MINOR ENSMUSG00000026657 Frmd4a ENSMUST00000132710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026657 Frmd4a ENSMUST00000147156 - NO_TRANSLATION retained_intron ENSMUSG00000026657 Frmd4a ENSMUST00000141746 - NO_TRANSLATION retained_intron ENSMUSG00000026657 Frmd4a ENSMUST00000176803 ENSMUSP00000135432 TRANSLATION nonsense_mediated_decay start - 5 115.0 0.0 2.21 0.0 56.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000026657 Frmd4a ENSMUST00000176962 - NO_TRANSLATION retained_intron ENSMUSG00000026657 Frmd4a ENSMUST00000175944 ENSMUSP00000135686 TRANSLATION protein_coding stop - 5 525.0 0.0 5.483 0.0 413.9 0.0 -4,-5 0.0413 10 -2.0 MINOR ENSMUSG00000026657 Frmd4a ENSMUST00000239018 ENSMUSP00000159003 TRANSLATION protein_coding stop - - 44.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026657 Frmd4a ENSMUST00000115037 ENSMUSP00000110689 TRANSLATION protein_coding stop - 5 142.0 0.0 2.808 0.0 83.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026657 Frmd4a ENSMUST00000153160 - NO_TRANSLATION retained_intron ENSMUSG00000026657 Frmd4a ENSMUST00000075767 ENSMUSP00000075172 TRANSLATION protein_coding - CCDS50488.1 1 1020.0 0.0 5.483 1.1 413.9 0.0 -4,-5 0.5362 18 12.027 MINOR ENSMUSG00000026657 Frmd4a ENSMUST00000091497 ENSMUSP00000089079 TRANSLATION protein_coding - CCDS15656.2 1 1042.0 0.0 5.483 12.2 413.9 0.0 -4,-2 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000026657 Frmd4a ENSMUST00000176864 ENSMUSP00000135057 TRANSLATION nonsense_mediated_decay start - 5 159.0 0.0 0.0 0.0 148.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026657 Frmd4a ENSMUST00000142452 - NO_TRANSLATION retained_intron ENSMUSG00000045684 Lcn6 ENSMUST00000114199 ENSMUSP00000109837 TRANSLATION protein_coding - CCDS50535.1 1 181.0 0.0 4.28 1.5 39.5 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000045684 Lcn6 ENSMUST00000114197 ENSMUSP00000109835 TRANSLATION protein_coding - - 1 179.0 0.0 2.85 0.0 24.1 0.0 -4,-7 0.022 - 6.798 MINOR ENSMUSG00000045684 Lcn6 ENSMUST00000059693 ENSMUSP00000055660 TRANSLATION protein_coding - - 5 115.0 0.0 3.18 0.0 24.1 0.0 -4,-7 0.0004 - 7.458 MINOR ENSMUSG00000045684 Lcn6 ENSMUST00000139441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025839 Pramel7 ENSMUST00000026957 ENSMUSP00000026957 TRANSLATION protein_coding - CCDS16293.1 1 479.0 0.0 1.9 0.1 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000025839 Pramel7 ENSMUST00000138293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025839 Pramel7 ENSMUST00000141790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025839 Pramel7 ENSMUST00000148030 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026961 Lrrc26 ENSMUST00000028337 ENSMUSP00000028337 TRANSLATION protein_coding - CCDS15763.1 1 331.0 0.0 1.8 0.1 62.0 0.0 4,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000026766 Mmadhc ENSMUST00000134480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026766 Mmadhc ENSMUST00000102769 ENSMUSP00000099830 TRANSLATION protein_coding - CCDS16027.1 1 296.0 0.0 4.5 31.7 433.8 0.0 -4,0 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000026766 Mmadhc ENSMUST00000152948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026766 Mmadhc ENSMUST00000133768 ENSMUSP00000115961 TRANSLATION protein_coding stop - 3 179.0 0.0 1.5 0.0 198.2 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000026766 Mmadhc ENSMUST00000147345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026766 Mmadhc ENSMUST00000144143 ENSMUSP00000122804 TRANSLATION protein_coding stop - 3 219.0 0.0 3.0 0.0 270.0 0.0 -4,0 0.0007 4 -2.0 MINOR ENSMUSG00000026766 Mmadhc ENSMUST00000154254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026766 Mmadhc ENSMUST00000140563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015627 Gata5 ENSMUST00000015771 ENSMUSP00000015771 TRANSLATION protein_coding - CCDS17175.1 1 404.0 8.0 3.0 7.6 293.5 0.0 -4,-6 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000042410 Agps ENSMUST00000176056 ENSMUSP00000134773 TRANSLATION protein_coding start - 3 57.0 5.0 1.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042410 Agps ENSMUST00000176973 ENSMUSP00000134806 TRANSLATION nonsense_mediated_decay start - 2 24.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042410 Agps ENSMUST00000111952 ENSMUSP00000107583 TRANSLATION protein_coding - - 2 508.0 30.0 10.16 0.0 201.1 0.0 -4,-7 0.0023 11 8.0 MINOR ENSMUSG00000042410 Agps ENSMUST00000047232 ENSMUSP00000041967 TRANSLATION protein_coding - CCDS16151.2 1 671.0 30.0 15.49 1.1 335.0 0.0 -4,-7 0.4035 17 14.042 ALTERNATIVE:2 ENSMUSG00000042410 Agps ENSMUST00000176626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042410 Agps ENSMUST00000175646 ENSMUSP00000135457 TRANSLATION protein_coding - - 5 568.0 30.0 15.49 3.4 335.7 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:2 ENSMUSG00000042410 Agps ENSMUST00000177204 - NO_TRANSLATION retained_intron ENSMUSG00000096729 Cwc22rt3 ENSMUST00000099951 ENSMUSP00000097534 TRANSLATION protein_coding - - - 830.0 0.0 3.43 0.0 130.3 0.0 -4,-2 0.8382 - 12.0 PRINCIPAL:1 ENSMUSG00000096729 Cwc22rt3 ENSMUST00000179504 ENSMUSP00000136120 TRANSLATION protein_coding start - 5 243.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0008 - -2.0 MINOR ENSMUSG00000026817 Ak1 ENSMUST00000135392 - NO_TRANSLATION retained_intron ENSMUSG00000026817 Ak1 ENSMUST00000156578 ENSMUSP00000123534 TRANSLATION protein_coding stop - 2 89.0 10.0 2.25 0.0 97.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026817 Ak1 ENSMUST00000195721 ENSMUSP00000142174 TRANSLATION protein_coding stop - 3 96.0 6.0 2.75 0.0 110.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026817 Ak1 ENSMUST00000068271 ENSMUSP00000068479 TRANSLATION protein_coding - CCDS15924.1 1 210.0 11.0 4.83 14.9 178.5 0.0 -4,-5 0.5105 12 19.548 MINOR ENSMUSG00000026817 Ak1 ENSMUST00000113278 ENSMUSP00000108903 TRANSLATION protein_coding - CCDS57167.1 1 194.0 11.0 4.83 36.9 178.5 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000026817 Ak1 ENSMUST00000113277 ENSMUSP00000108902 TRANSLATION protein_coding - CCDS57167.1 1 194.0 11.0 4.83 36.9 178.5 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000060445 Sycp2 ENSMUST00000081134 ENSMUSP00000079909 TRANSLATION protein_coding - CCDS38370.1 1 1500.0 0.0 9.41 0.0 0.0 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000060445 Sycp2 ENSMUST00000132765 - NO_TRANSLATION retained_intron ENSMUSG00000060445 Sycp2 ENSMUST00000138175 ENSMUSP00000116917 TRANSLATION protein_coding stop - 5 185.0 0.0 4.51 0.0 0.0 0.0 -4,-5 0.0017 - -2.0 MINOR ENSMUSG00000060445 Sycp2 ENSMUST00000132611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026803 Ttf1 ENSMUST00000122866 - NO_TRANSLATION retained_intron ENSMUSG00000026803 Ttf1 ENSMUST00000142786 - NO_TRANSLATION retained_intron ENSMUSG00000026803 Ttf1 ENSMUST00000130506 - NO_TRANSLATION retained_intron ENSMUSG00000026803 Ttf1 ENSMUST00000100237 ENSMUSP00000097809 TRANSLATION protein_coding - CCDS38089.1 5 859.0 0.0 4.46 0.0 25.0 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000002100 Mybpc3 ENSMUST00000137942 ENSMUSP00000119994 TRANSLATION protein_coding - - 5 1113.0 0.0 20.6855 0.0 441.3 0.0 -4,-6 0.0823 23 4.298 MINOR ENSMUSG00000002100 Mybpc3 ENSMUST00000169776 ENSMUSP00000127070 TRANSLATION protein_coding - CCDS50631.1 5 1278.0 0.0 22.5355 0.0 485.9 0.0 -4,-6 1.0 28 8.0 PRINCIPAL:2 ENSMUSG00000002100 Mybpc3 ENSMUST00000111430 ENSMUSP00000107058 TRANSLATION protein_coding - - 5 1277.0 0.0 22.5355 0.0 485.9 0.0 -4,-6 0.7102 28 8.0 ALTERNATIVE:2 ENSMUSG00000044145 1810024B03Rik ENSMUST00000056146 ENSMUSP00000061355 TRANSLATION protein_coding - CCDS50702.1 1 200.0 3.0 1.0 0.0 156.2 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044145 1810024B03Rik ENSMUST00000150956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005089 Slc1a2 ENSMUST00000137466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005089 Slc1a2 ENSMUST00000136221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005089 Slc1a2 ENSMUST00000111213 ENSMUSP00000106844 TRANSLATION protein_coding - - 5 561.0 0.0 8.05 0.1 440.6 7.0 -4,-7 0.124 19 12.0 MINOR ENSMUSG00000005089 Slc1a2 ENSMUST00000005220 ENSMUSP00000005220 TRANSLATION protein_coding - CCDS16469.1 1 558.0 0.0 8.05 0.0 440.6 7.0 -4,-2 0.3208 19 12.0 MINOR ENSMUSG00000005089 Slc1a2 ENSMUST00000080210 ENSMUSP00000079100 TRANSLATION protein_coding - CCDS38188.1 1 572.0 0.0 8.05 18.2 440.6 7.0 -4,-7 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000005089 Slc1a2 ENSMUST00000128622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005089 Slc1a2 ENSMUST00000145921 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005089 Slc1a2 ENSMUST00000136488 ENSMUSP00000122094 TRANSLATION protein_coding start/stop - 5 196.0 0.0 3.1 0.0 174.7 2.0 -4,-5 0.0015 8 -2.0 MINOR ENSMUSG00000005089 Slc1a2 ENSMUST00000111212 ENSMUSP00000106843 TRANSLATION protein_coding - CCDS38189.1 1 569.0 0.0 8.05 4.1 440.6 7.0 -4,-2 0.6407 21 12.72 MINOR ENSMUSG00000005089 Slc1a2 ENSMUST00000123759 ENSMUSP00000115129 TRANSLATION protein_coding stop - 3 157.0 0.0 2.0 0.0 94.7 3.0 -4,-6 0.0018 4 -2.0 MINOR ENSMUSG00000005089 Slc1a2 ENSMUST00000125085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005089 Slc1a2 ENSMUST00000154446 ENSMUSP00000117549 TRANSLATION protein_coding start - 5 145.0 0.0 2.3 0.0 90.8 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000074704 Rad21l ENSMUST00000180195 ENSMUSP00000136918 TRANSLATION protein_coding - CCDS50747.2 1 552.0 0.0 2.8 9.2 186.5 0.0 -4,-2 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000074704 Rad21l ENSMUST00000096439 ENSMUSP00000094174 TRANSLATION protein_coding - - 5 549.0 0.0 2.8 7.0 186.5 0.0 -4,-2 0.7685 - 10.196 ALTERNATIVE:1 ENSMUSG00000040591 Cstpp1 ENSMUST00000139490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040591 Cstpp1 ENSMUST00000132092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040591 Cstpp1 ENSMUST00000094835 ENSMUSP00000092431 TRANSLATION protein_coding - - 1 234.0 0.0 0.0 1.0 0.0 0.0 -4,-7 0.101 1 0.0 MINOR ENSMUSG00000040591 Cstpp1 ENSMUST00000064652 ENSMUSP00000067770 TRANSLATION protein_coding - CCDS79823.1 1 326.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.2317 4 0.0 MINOR ENSMUSG00000040591 Cstpp1 ENSMUST00000139807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040591 Cstpp1 ENSMUST00000141262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040591 Cstpp1 ENSMUST00000145573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040591 Cstpp1 ENSMUST00000102594 ENSMUSP00000099654 TRANSLATION protein_coding - CCDS16431.1 1 331.0 0.0 0.0 17.7 0.0 0.0 -4,-5 1.0 5 4.0 PRINCIPAL:1 ENSMUSG00000078972 Gm15557 ENSMUST00000109629 ENSMUSP00000105257 TRANSLATION protein_coding - - 5 234.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.6005 - 0.0 PRINCIPAL:1 ENSMUSG00000062124 Defb45 ENSMUST00000109834 ENSMUSP00000105460 TRANSLATION protein_coding - CCDS38278.1 1 66.0 0.0 1.3 0.1 35.6 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062124 Defb45 ENSMUST00000131096 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002458 Rgs19 ENSMUST00000108776 ENSMUSP00000104406 TRANSLATION protein_coding - CCDS17220.1 1 216.0 0.0 3.0 9.0 119.4 0.0 -4,-5 0.8627 5 10.223 ALTERNATIVE:1 ENSMUSG00000002458 Rgs19 ENSMUST00000108779 ENSMUSP00000104409 TRANSLATION protein_coding - - 5 75.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000002458 Rgs19 ENSMUST00000108771 ENSMUSP00000104402 TRANSLATION protein_coding - CCDS71222.1 1 194.0 0.0 3.0 11.8 119.4 0.0 -4,-6 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000002458 Rgs19 ENSMUST00000002532 ENSMUSP00000002532 TRANSLATION protein_coding - CCDS17220.1 1 216.0 0.0 3.0 9.0 119.4 0.0 -4,-5 0.8627 5 10.223 ALTERNATIVE:1 ENSMUSG00000002458 Rgs19 ENSMUST00000165416 ENSMUSP00000129026 TRANSLATION protein_coding - CCDS17220.1 1 216.0 0.0 3.0 9.0 119.4 0.0 -4,-5 0.8627 5 10.223 ALTERNATIVE:1 ENSMUSG00000002458 Rgs19 ENSMUST00000108778 ENSMUSP00000104408 TRANSLATION protein_coding - CCDS71223.1 1 243.0 0.0 3.0 0.0 119.4 0.0 -4,-5 0.1267 5 8.0 MINOR ENSMUSG00000002458 Rgs19 ENSMUST00000108769 ENSMUSP00000104400 TRANSLATION protein_coding - - 2 160.0 0.0 2.198 0.0 61.3 0.0 -4,-5 0.0 4 4.398 MINOR ENSMUSG00000002458 Rgs19 ENSMUST00000144476 ENSMUSP00000120723 TRANSLATION protein_coding start - 2 51.0 0.0 1.0 0.0 32.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002458 Rgs19 ENSMUST00000143510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002458 Rgs19 ENSMUST00000108772 ENSMUSP00000104403 TRANSLATION protein_coding - CCDS71222.1 1 194.0 0.0 3.0 11.8 119.4 0.0 -4,-6 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000002458 Rgs19 ENSMUST00000124776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002458 Rgs19 ENSMUST00000130712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057147 Dph6 ENSMUST00000138975 - NO_TRANSLATION retained_intron ENSMUSG00000057147 Dph6 ENSMUST00000138106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057147 Dph6 ENSMUST00000055144 ENSMUSP00000060730 TRANSLATION protein_coding - - 1 271.0 9.0 6.58 0.0 154.4 0.0 -4,-5 0.0819 3 17.34 MINOR ENSMUSG00000057147 Dph6 ENSMUST00000102542 ENSMUSP00000099601 TRANSLATION protein_coding - CCDS16567.1 1 267.0 9.0 6.91 8.6 154.4 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000057147 Dph6 ENSMUST00000028640 ENSMUSP00000028640 TRANSLATION protein_coding - - 1 225.0 9.0 4.83 0.0 102.0 0.0 -4,-5 0.0004 2 10.698 MINOR ENSMUSG00000057147 Dph6 ENSMUST00000150447 - NO_TRANSLATION retained_intron ENSMUSG00000027519 Rab22a ENSMUST00000142820 ENSMUSP00000122799 TRANSLATION nonsense_mediated_decay - - 1 68.0 12.0 1.4 0.0 39.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027519 Rab22a ENSMUST00000109110 ENSMUSP00000104738 TRANSLATION protein_coding - - 5 187.0 24.0 4.83 13.7 134.6 0.0 -4,-5 0.2612 6 14.906 MINOR ENSMUSG00000027519 Rab22a ENSMUST00000029024 ENSMUSP00000029024 TRANSLATION protein_coding - CCDS38352.1 1 194.0 24.0 5.58 35.5 185.7 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000003418 St8sia6 ENSMUST00000003509 ENSMUSP00000003509 TRANSLATION protein_coding - CCDS15697.1 1 398.0 14.0 4.75 7.3 257.6 0.0 1,-3 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000003418 St8sia6 ENSMUST00000150781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049950 Rpp38 ENSMUST00000062672 ENSMUSP00000050992 TRANSLATION protein_coding - CCDS15645.1 1 280.0 0.0 0.33 6.7 51.3 0.0 -4,-2 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000047030 Spata2 ENSMUST00000155875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047030 Spata2 ENSMUST00000126389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047030 Spata2 ENSMUST00000057627 ENSMUSP00000057095 TRANSLATION protein_coding - CCDS17100.1 1 515.0 9.0 0.93 0.4 0.0 0.0 -4,-5 0.9749 9 12.0 PRINCIPAL:1 ENSMUSG00000047030 Spata2 ENSMUST00000147051 - NO_TRANSLATION retained_intron ENSMUSG00000047030 Spata2 ENSMUST00000109211 ENSMUSP00000104834 TRANSLATION protein_coding - - 1 414.0 5.0 0.93 0.0 0.0 0.0 -4,-5 0.088 6 9.336 MINOR ENSMUSG00000047030 Spata2 ENSMUST00000154770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005505 Kbtbd4 ENSMUST00000124284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005505 Kbtbd4 ENSMUST00000155372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005505 Kbtbd4 ENSMUST00000090682 ENSMUSP00000088179 TRANSLATION protein_coding - CCDS16419.1 1 518.0 0.0 1.7 24.6 153.9 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000005505 Kbtbd4 ENSMUST00000140945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005505 Kbtbd4 ENSMUST00000111464 ENSMUSP00000107089 TRANSLATION protein_coding - CCDS79820.1 1 534.0 0.0 1.7 9.2 153.9 0.0 -4,-5 0.6369 9 13.388 MINOR ENSMUSG00000017002 Slpi ENSMUST00000109367 ENSMUSP00000104992 TRANSLATION protein_coding - CCDS17033.1 1 131.0 0.0 2.33 6.2 71.9 0.0 3,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000017002 Slpi ENSMUST00000167427 ENSMUSP00000129629 TRANSLATION protein_coding stop - 5 34.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000017002 Slpi ENSMUST00000165980 ENSMUSP00000128025 TRANSLATION protein_coding - - 3 107.0 0.0 2.33 0.0 71.9 0.0 -4,-5 0.0091 3 12.0 MINOR ENSMUSG00000109813 Or4g16 ENSMUST00000216697 ENSMUSP00000149972 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 10.5 150.8 7.0 -4,-7 0.8769 - 11.0 ALTERNATIVE:1 ENSMUSG00000109813 Or4g16 ENSMUST00000213823 ENSMUSP00000150799 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 10.5 150.8 7.0 -4,-7 0.8769 - 11.0 ALTERNATIVE:1 ENSMUSG00000109813 Or4g16 ENSMUST00000090329 ENSMUSP00000087801 TRANSLATION protein_coding - CCDS16519.1 - 313.0 0.0 1.0 10.5 150.8 7.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000070875 Or8h10 ENSMUST00000094913 ENSMUSP00000092517 TRANSLATION protein_coding - CCDS16273.1 - 321.0 0.0 1.0 1.3 173.7 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000070875 Or8h10 ENSMUST00000117211 ENSMUSP00000151088 TRANSLATION protein_coding - CCDS16273.1 5 321.0 0.0 1.0 1.3 173.7 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075380 Or1l8 ENSMUST00000100147 ENSMUSP00000097725 TRANSLATION protein_coding - CCDS15988.1 - 310.0 0.0 1.0 11.4 186.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075380 Or1l8 ENSMUST00000213574 ENSMUSP00000151206 TRANSLATION protein_coding - CCDS15988.1 5 310.0 0.0 1.0 11.4 186.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032680 6820408C15Rik ENSMUST00000153713 ENSMUSP00000120724 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000032680 6820408C15Rik ENSMUST00000039961 ENSMUSP00000037024 TRANSLATION protein_coding - CCDS16885.1 1 354.0 0.0 6.0 0.4 339.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032680 6820408C15Rik ENSMUST00000128737 ENSMUSP00000117627 TRANSLATION protein_coding stop - 3 158.0 0.0 1.33 0.0 67.6 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000059205 Or10ag60 ENSMUST00000216580 ENSMUSP00000150905 TRANSLATION protein_coding - CCDS16297.1 5 314.0 0.0 1.0 8.3 174.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059205 Or10ag60 ENSMUST00000213103 ENSMUSP00000150609 TRANSLATION protein_coding - CCDS16297.1 3 314.0 0.0 1.0 8.3 174.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039195 Bbln ENSMUST00000146423 ENSMUSP00000142021 TRANSLATION protein_coding - - 1 52.0 0.0 0.0 0.0 25.1 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000039195 Bbln ENSMUST00000048792 ENSMUSP00000038970 TRANSLATION protein_coding - CCDS38103.1 1 83.0 0.0 1.75 10.2 144.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036281 Snapc4 ENSMUST00000133778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036281 Snapc4 ENSMUST00000150121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036281 Snapc4 ENSMUST00000035427 ENSMUSP00000041767 TRANSLATION protein_coding - CCDS15802.1 1 1325.0 0.0 2.7675 0.0 136.2 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:4 ENSMUSG00000036281 Snapc4 ENSMUST00000136054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036281 Snapc4 ENSMUST00000144871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036281 Snapc4 ENSMUST00000114115 ENSMUSP00000109750 TRANSLATION protein_coding - - 1 1333.0 0.0 2.7675 0.0 136.2 0.0 -4,-5 0.989 4 8.0 ALTERNATIVE:2 ENSMUSG00000036281 Snapc4 ENSMUST00000149316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036281 Snapc4 ENSMUST00000125789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036281 Snapc4 ENSMUST00000124843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036281 Snapc4 ENSMUST00000123934 ENSMUSP00000122456 TRANSLATION protein_coding start/stop - 3 254.0 0.0 2.65 0.0 102.0 0.0 -4,-2 0.0128 - -2.0 MINOR ENSMUSG00000036281 Snapc4 ENSMUST00000148024 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036281 Snapc4 ENSMUST00000155643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036281 Snapc4 ENSMUST00000135171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036281 Snapc4 ENSMUST00000149850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074749 Kiz ENSMUST00000135595 - NO_TRANSLATION retained_intron ENSMUSG00000074749 Kiz ENSMUST00000156232 ENSMUSP00000121952 TRANSLATION protein_coding stop - 5 207.0 0.0 2.35 0.0 0.0 0.0 -4,-2 0.0309 2 -2.0 MINOR ENSMUSG00000074749 Kiz ENSMUST00000099278 ENSMUSP00000096884 TRANSLATION protein_coding - CCDS16832.1 1 695.0 0.0 3.1 0.3 0.0 0.0 -4,-2 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000039686 Zer1 ENSMUST00000044751 ENSMUSP00000046441 TRANSLATION protein_coding - CCDS15870.1 1 779.0 0.0 4.065 0.1 0.0 0.0 -4,-5 0.2116 12 5.25 MINOR ENSMUSG00000039686 Zer1 ENSMUST00000152285 - NO_TRANSLATION retained_intron ENSMUSG00000039686 Zer1 ENSMUST00000149818 - NO_TRANSLATION retained_intron ENSMUSG00000039686 Zer1 ENSMUST00000154231 - NO_TRANSLATION retained_intron ENSMUSG00000039686 Zer1 ENSMUST00000133354 - NO_TRANSLATION retained_intron ENSMUSG00000039686 Zer1 ENSMUST00000152068 - NO_TRANSLATION retained_intron ENSMUSG00000039686 Zer1 ENSMUST00000131858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039686 Zer1 ENSMUST00000113677 ENSMUSP00000109307 TRANSLATION protein_coding - CCDS71017.1 1 766.0 0.0 4.44 21.7 0.0 0.0 -4,-5 1.0 12 10.0 PRINCIPAL:1 ENSMUSG00000039686 Zer1 ENSMUST00000139128 - NO_TRANSLATION retained_intron ENSMUSG00000050447 Lypd6 ENSMUST00000128451 ENSMUSP00000116803 TRANSLATION protein_coding stop - 5 123.0 2.0 3.33 0.0 139.8 0.0 3,-2 0.0011 2 -2.0 MINOR ENSMUSG00000050447 Lypd6 ENSMUST00000169232 ENSMUSP00000131002 TRANSLATION protein_coding - CCDS16026.1 1 171.0 2.0 4.33 10.9 177.9 0.0 3,-2 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000050447 Lypd6 ENSMUST00000112712 ENSMUSP00000108332 TRANSLATION protein_coding - CCDS16026.1 5 171.0 2.0 4.33 10.9 177.9 0.0 3,-2 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000050447 Lypd6 ENSMUST00000053208 ENSMUSP00000061578 TRANSLATION protein_coding - CCDS16026.1 1 171.0 2.0 4.33 10.9 177.9 0.0 3,-2 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000050447 Lypd6 ENSMUST00000126337 ENSMUSP00000119755 TRANSLATION protein_coding stop - 2 70.0 2.0 2.0 0.0 55.0 0.0 3,-2 0.0018 - -2.0 MINOR ENSMUSG00000009566 Fpgs ENSMUST00000127812 ENSMUSP00000116434 TRANSLATION protein_coding stop - 2 243.0 8.0 4.0 0.0 0.0 0.0 -4,-7 0.0121 2 -2.0 MINOR ENSMUSG00000009566 Fpgs ENSMUST00000146498 ENSMUSP00000141899 TRANSLATION nonsense_mediated_decay - - 5 189.0 5.0 1.4 0.0 0.0 0.0 -4,-7 0.0102 1 -2.0 MINOR ENSMUSG00000009566 Fpgs ENSMUST00000123171 - NO_TRANSLATION retained_intron ENSMUSG00000009566 Fpgs ENSMUST00000149491 - NO_TRANSLATION retained_intron ENSMUSG00000009566 Fpgs ENSMUST00000028148 ENSMUSP00000028148 TRANSLATION protein_coding - CCDS15926.1 1 587.0 9.0 5.935 10.1 0.0 0.0 1,3 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000009566 Fpgs ENSMUST00000156792 - NO_TRANSLATION retained_intron ENSMUSG00000009566 Fpgs ENSMUST00000130164 - NO_TRANSLATION retained_intron ENSMUSG00000009566 Fpgs ENSMUST00000142186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009566 Fpgs ENSMUST00000143743 ENSMUSP00000141705 TRANSLATION protein_coding stop - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0158 - -2.0 MINOR ENSMUSG00000009566 Fpgs ENSMUST00000132327 - NO_TRANSLATION retained_intron ENSMUSG00000027070 Lrp2 ENSMUST00000080953 ENSMUSP00000079752 TRANSLATION protein_coding - CCDS38135.1 5 4660.0 167.0 36.476 0.4 2061.9 0.0 4,-1 1.0 80 18.0 PRINCIPAL:1 ENSMUSG00000027070 Lrp2 ENSMUST00000092551 ENSMUSP00000090212 TRANSLATION protein_coding - - 1 426.0 38.0 6.35 0.0 270.9 0.0 4,-1 0.0019 2 0.0 MINOR ENSMUSG00000027070 Lrp2 ENSMUST00000100051 ENSMUSP00000097628 TRANSLATION protein_coding - - 1 1363.0 67.0 16.35 0.0 683.4 0.0 4,-1 0.0626 21 0.0 MINOR ENSMUSG00000027070 Lrp2 ENSMUST00000128742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026895 Ndufa8 ENSMUST00000070112 ENSMUSP00000065352 TRANSLATION protein_coding - CCDS15967.1 1 172.0 0.0 3.5 35.7 31.0 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000027167 Elp4 ENSMUST00000028588 ENSMUSP00000028588 TRANSLATION protein_coding start/stop - 5 278.0 0.0 0.16 0.0 228.4 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000027167 Elp4 ENSMUST00000152272 - NO_TRANSLATION retained_intron ENSMUSG00000027167 Elp4 ENSMUST00000122965 ENSMUSP00000116575 TRANSLATION protein_coding - CCDS16500.1 1 422.0 0.0 0.515 9.8 374.4 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000027167 Elp4 ENSMUST00000148441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027285 Haus2 ENSMUST00000110706 ENSMUSP00000106334 TRANSLATION protein_coding - CCDS71120.1 1 202.0 0.0 0.0 2.8 211.9 0.0 -4,-5 0.1729 4 4.91 MINOR ENSMUSG00000027285 Haus2 ENSMUST00000124187 ENSMUSP00000117299 TRANSLATION protein_coding - CCDS16624.1 1 234.0 0.0 0.0 7.3 239.6 0.0 -4,-7 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000027285 Haus2 ENSMUST00000028741 ENSMUSP00000028741 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 45.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000005881 Ergic3 ENSMUST00000150970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005881 Ergic3 ENSMUST00000137545 - NO_TRANSLATION retained_intron ENSMUSG00000005881 Ergic3 ENSMUST00000130793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005881 Ergic3 ENSMUST00000088650 ENSMUSP00000086025 TRANSLATION protein_coding - - 1 394.0 0.0 3.391 31.4 412.7 2.0 -4,-6 0.7585 6 11.254 ALTERNATIVE:1 ENSMUSG00000005881 Ergic3 ENSMUST00000152568 - NO_TRANSLATION retained_intron ENSMUSG00000005881 Ergic3 ENSMUST00000142859 ENSMUSP00000115912 TRANSLATION protein_coding start/stop - 5 246.0 0.0 1.926 0.0 226.3 0.0 -4,-6 0.0004 6 -2.0 MINOR ENSMUSG00000005881 Ergic3 ENSMUST00000149381 - NO_TRANSLATION retained_intron ENSMUSG00000005881 Ergic3 ENSMUST00000155370 ENSMUSP00000119051 TRANSLATION protein_coding start - 3 235.0 0.0 2.911 0.0 307.0 0.0 -4,-5 0.001 5 -2.0 MINOR ENSMUSG00000005881 Ergic3 ENSMUST00000144707 - NO_TRANSLATION retained_intron ENSMUSG00000005881 Ergic3 ENSMUST00000006035 ENSMUSP00000006035 TRANSLATION protein_coding - CCDS16959.1 1 383.0 0.0 3.391 34.9 423.1 2.0 -4,-6 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000027579 Srms ENSMUST00000016498 ENSMUSP00000016498 TRANSLATION protein_coding - CCDS17204.1 1 507.0 18.0 6.36 1.1 418.9 0.0 -3,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000075419 Dolk ENSMUST00000100219 ENSMUSP00000097792 TRANSLATION protein_coding - CCDS15877.1 - 534.0 0.0 0.0 0.0 0.0 0.0 -2,-4 0.8976 3 0.0 PRINCIPAL:1 ENSMUSG00000069080 Lcn11 ENSMUST00000091278 ENSMUSP00000088822 TRANSLATION protein_coding - CCDS50536.1 2 178.0 0.0 3.95 0.0 73.7 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000035268 Pkig ENSMUST00000152418 ENSMUSP00000121956 TRANSLATION protein_coding stop - 3 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035268 Pkig ENSMUST00000064703 ENSMUSP00000068344 TRANSLATION protein_coding - CCDS17014.1 1 76.0 0.0 0.0 16.7 102.6 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000035268 Pkig ENSMUST00000131228 ENSMUSP00000120355 TRANSLATION protein_coding stop - 2 71.0 0.0 0.0 2.2 102.6 0.0 -4,-5 0.1462 - -2.0 MINOR ENSMUSG00000035268 Pkig ENSMUST00000147385 - NO_TRANSLATION retained_intron ENSMUSG00000035268 Pkig ENSMUST00000126182 ENSMUSP00000120145 TRANSLATION protein_coding - CCDS17014.1 2 76.0 0.0 0.0 16.7 102.6 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000035268 Pkig ENSMUST00000135537 ENSMUSP00000114291 TRANSLATION protein_coding stop - 5 56.0 0.0 0.0 0.0 90.5 0.0 -4,-5 0.0024 - -2.0 MINOR ENSMUSG00000035268 Pkig ENSMUST00000109400 ENSMUSP00000105027 TRANSLATION protein_coding - CCDS17014.1 1 76.0 0.0 0.0 16.7 102.6 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000035268 Pkig ENSMUST00000164399 ENSMUSP00000126223 TRANSLATION protein_coding - CCDS17014.1 2 76.0 0.0 0.0 16.7 102.6 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000035268 Pkig ENSMUST00000099105 ENSMUSP00000096704 TRANSLATION protein_coding - CCDS17014.1 2 76.0 0.0 0.0 16.7 102.6 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000027022 Xirp2 ENSMUST00000134620 - NO_TRANSLATION retained_intron ENSMUSG00000027022 Xirp2 ENSMUST00000238878 ENSMUSP00000158861 TRANSLATION protein_coding stop - - 284.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0016 3 -2.0 MINOR ENSMUSG00000027022 Xirp2 ENSMUST00000239164 ENSMUSP00000159177 TRANSLATION protein_coding start - - 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027022 Xirp2 ENSMUST00000239060 ENSMUSP00000159181 TRANSLATION protein_coding - - - 701.0 8.0 2.316 0.3 35.7 0.0 -4,-2 0.0594 2 12.0 MINOR ENSMUSG00000027022 Xirp2 ENSMUST00000239009 ENSMUSP00000158994 TRANSLATION protein_coding - - - 930.0 8.0 2.316 0.0 35.7 0.0 -4,-5 0.0696 2 12.0 MINOR ENSMUSG00000027022 Xirp2 ENSMUST00000239121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027022 Xirp2 ENSMUST00000239053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027022 Xirp2 ENSMUST00000238912 ENSMUSP00000159084 TRANSLATION protein_coding - - - 3512.0 0.0 0.0 0.0 526.5 0.0 -4,-5 0.1942 52 3.858 MINOR ENSMUSG00000027022 Xirp2 ENSMUST00000112347 ENSMUSP00000107966 TRANSLATION protein_coding - CCDS38133.1 1 3283.0 0.0 0.0 0.0 526.5 0.0 -4,-2 0.3409 52 3.858 MINOR ENSMUSG00000027022 Xirp2 ENSMUST00000238989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027022 Xirp2 ENSMUST00000028410 ENSMUSP00000028410 TRANSLATION protein_coding - CCDS16082.1 1 3784.0 8.0 2.25 0.0 562.2 0.0 -4,-2 1.0 51 17.832 PRINCIPAL:1 ENSMUSG00000002102 Psmc3 ENSMUST00000152269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002102 Psmc3 ENSMUST00000151419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002102 Psmc3 ENSMUST00000131473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002102 Psmc3 ENSMUST00000146506 ENSMUSP00000121688 TRANSLATION nonsense_mediated_decay start - 3 203.0 3.0 4.23 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000002102 Psmc3 ENSMUST00000185715 ENSMUSP00000139782 TRANSLATION protein_coding stop - 3 305.0 10.0 7.75 0.0 100.0 0.0 -4,-5 0.001 15 -2.0 MINOR ENSMUSG00000002102 Psmc3 ENSMUST00000002171 ENSMUSP00000002171 TRANSLATION protein_coding - - 1 451.0 12.0 9.65 0.0 142.1 0.0 -4,-5 0.0655 23 16.302 MINOR ENSMUSG00000002102 Psmc3 ENSMUST00000067663 ENSMUSP00000071054 TRANSLATION protein_coding - CCDS16423.1 1 442.0 12.0 10.5 6.2 142.1 0.0 -4,-5 1.0 25 20.0 PRINCIPAL:1 ENSMUSG00000002102 Psmc3 ENSMUST00000111441 ENSMUSP00000107068 TRANSLATION protein_coding - - 5 400.0 12.0 9.5 0.0 142.1 0.0 -4,-5 0.008 23 16.002 MINOR ENSMUSG00000002102 Psmc3 ENSMUST00000145317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002102 Psmc3 ENSMUST00000141462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078872 Gm14401 ENSMUST00000134614 ENSMUSP00000119549 TRANSLATION protein_coding - - 2 303.0 26.0 1.4 0.0 194.6 0.0 -4,-5 0.7982 - 18.0 PRINCIPAL:1 ENSMUSG00000078872 Gm14401 ENSMUST00000108969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078872 Gm14401 ENSMUST00000108970 ENSMUSP00000104598 TRANSLATION protein_coding - - 3 303.0 26.0 1.4 0.0 194.6 0.0 -4,-5 0.7982 - 18.0 PRINCIPAL:1 ENSMUSG00000060703 Cd302 ENSMUST00000028356 ENSMUSP00000028356 TRANSLATION protein_coding - CCDS16058.1 1 219.0 4.0 4.12375 0.0 42.6 1.0 3,-2 0.2811 2 11.34 ALTERNATIVE:2 ENSMUSG00000060703 Cd302 ENSMUST00000074606 ENSMUSP00000074188 TRANSLATION protein_coding - CCDS71058.1 1 228.0 4.0 4.45375 0.1 42.6 1.0 3,-2 1.0 3 12.0 PRINCIPAL:2 ENSMUSG00000033850 Or9g4b ENSMUST00000215945 ENSMUSP00000148957 TRANSLATION protein_coding - CCDS16220.1 5 312.0 0.0 1.0 0.0 165.8 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033850 Or9g4b ENSMUST00000047870 ENSMUSP00000046301 TRANSLATION protein_coding - CCDS16220.1 - 312.0 0.0 1.0 0.0 165.8 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033850 Or9g4b ENSMUST00000214726 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026818 Cel ENSMUST00000028161 ENSMUSP00000028161 TRANSLATION protein_coding - CCDS15841.1 1 599.0 14.0 10.0 3.9 527.0 0.0 3,-2 1.0 19 19.0 PRINCIPAL:1 ENSMUSG00000026818 Cel ENSMUST00000124756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026938 Fcna ENSMUST00000028307 ENSMUSP00000028307 TRANSLATION protein_coding - CCDS15785.1 1 334.0 6.0 4.35 0.8 285.2 0.0 3,-1 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000026938 Fcna ENSMUST00000142371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055943 Emc7 ENSMUST00000069747 ENSMUSP00000068610 TRANSLATION protein_coding - CCDS16555.1 1 241.0 0.0 3.55 6.6 116.4 0.0 3,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000068947 Or1af1 ENSMUST00000214897 ENSMUSP00000150608 TRANSLATION protein_coding - CCDS15996.1 5 309.0 0.0 1.0 13.6 208.3 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000068947 Or1af1 ENSMUST00000091001 ENSMUSP00000088524 TRANSLATION protein_coding - CCDS15996.1 - 309.0 0.0 1.0 13.6 208.3 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039671 Zmynd8 ENSMUST00000146204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039671 Zmynd8 ENSMUST00000149369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039671 Zmynd8 ENSMUST00000136842 ENSMUSP00000120631 TRANSLATION protein_coding stop - 3 191.0 8.0 2.5 0.0 31.8 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000039671 Zmynd8 ENSMUST00000139202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039671 Zmynd8 ENSMUST00000099084 ENSMUSP00000096683 TRANSLATION protein_coding - - 5 1206.0 8.0 9.375 0.0 450.1 0.0 -4,-6 0.3719 22 13.4 ALTERNATIVE:2 ENSMUSG00000039671 Zmynd8 ENSMUST00000150871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039671 Zmynd8 ENSMUST00000109269 ENSMUSP00000104892 TRANSLATION protein_coding - CCDS71195.1 1 1235.0 8.0 9.675 0.0 450.1 0.0 -4,-5 0.5083 22 14.0 ALTERNATIVE:2 ENSMUSG00000039671 Zmynd8 ENSMUST00000144530 ENSMUSP00000121363 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039671 Zmynd8 ENSMUST00000109262 ENSMUSP00000104885 TRANSLATION protein_coding - - 5 472.0 8.0 7.25 0.0 198.1 0.0 -4,-6 0.0007 8 8.486 MINOR ENSMUSG00000039671 Zmynd8 ENSMUST00000148674 - NO_TRANSLATION retained_intron ENSMUSG00000039671 Zmynd8 ENSMUST00000170272 ENSMUSP00000128680 TRANSLATION protein_coding - CCDS71194.1 1 1154.0 8.0 9.375 0.0 450.1 0.0 -4,-6 0.3759 22 13.4 ALTERNATIVE:2 ENSMUSG00000039671 Zmynd8 ENSMUST00000088113 ENSMUSP00000085436 TRANSLATION protein_coding - - 5 1094.0 8.0 9.375 0.0 450.1 0.0 -4,-5 0.2103 18 13.4 ALTERNATIVE:2 ENSMUSG00000039671 Zmynd8 ENSMUST00000150564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039671 Zmynd8 ENSMUST00000124085 - NO_TRANSLATION retained_intron ENSMUSG00000039671 Zmynd8 ENSMUST00000109266 ENSMUSP00000104889 TRANSLATION protein_coding - CCDS57188.1 1 1199.0 8.0 9.675 0.3 450.1 0.0 -2,-4 1.0 22 14.0 PRINCIPAL:2 ENSMUSG00000039671 Zmynd8 ENSMUST00000139907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039671 Zmynd8 ENSMUST00000177633 ENSMUSP00000136211 TRANSLATION protein_coding - CCDS57189.1 1 1174.0 8.0 9.375 0.3 450.1 0.0 -4,-5 0.4532 22 13.4 ALTERNATIVE:2 ENSMUSG00000039671 Zmynd8 ENSMUST00000018050 ENSMUSP00000018050 TRANSLATION protein_coding - - 5 1179.0 8.0 9.675 0.0 450.1 0.0 -4,-5 0.354 22 14.0 ALTERNATIVE:2 ENSMUSG00000039671 Zmynd8 ENSMUST00000134557 - NO_TRANSLATION retained_intron ENSMUSG00000039671 Zmynd8 ENSMUST00000153655 ENSMUSP00000120932 TRANSLATION protein_coding start - 1 492.0 8.0 7.25 0.0 198.1 0.0 -4,-5 0.0007 8 -2.0 MINOR ENSMUSG00000039671 Zmynd8 ENSMUST00000152682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109801 Or4f14d ENSMUST00000099596 ENSMUSP00000097191 TRANSLATION protein_coding - CCDS16545.1 - 314.0 0.0 1.0 11.5 139.2 6.0 -3,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109801 Or4f14d ENSMUST00000213696 ENSMUSP00000149103 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 0.0 139.2 6.0 -3,-4 0.1804 - 12.0 MINOR ENSMUSG00000027353 Mcm8 ENSMUST00000135685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027353 Mcm8 ENSMUST00000028831 ENSMUSP00000028831 TRANSLATION protein_coding - CCDS71152.1 1 833.0 10.0 9.82 9.6 507.1 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000027353 Mcm8 ENSMUST00000066559 ENSMUSP00000066842 TRANSLATION protein_coding - CCDS16778.1 1 805.0 10.0 9.82 0.0 507.1 0.0 -4,-7 0.1803 2 18.0 MINOR ENSMUSG00000017721 Pigt ENSMUST00000138038 - NO_TRANSLATION retained_intron ENSMUSG00000017721 Pigt ENSMUST00000152522 ENSMUSP00000115362 TRANSLATION nonsense_mediated_decay start - 5 143.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.077 - -2.0 MINOR ENSMUSG00000017721 Pigt ENSMUST00000131976 - NO_TRANSLATION retained_intron ENSMUSG00000017721 Pigt ENSMUST00000117066 ENSMUSP00000112577 TRANSLATION protein_coding - - 1 435.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.1034 6 0.0 ALTERNATIVE:2 ENSMUSG00000017721 Pigt ENSMUST00000103101 ENSMUSP00000099390 TRANSLATION protein_coding - CCDS17038.2 1 582.0 0.0 0.0 2.4 0.0 0.0 3,-2 1.0 10 1.0 PRINCIPAL:2 ENSMUSG00000026974 Zmynd19 ENSMUST00000028350 ENSMUSP00000028350 TRANSLATION protein_coding - CCDS15742.1 1 227.0 8.0 0.6 31.2 29.1 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000026974 Zmynd19 ENSMUST00000148042 ENSMUSP00000141788 TRANSLATION protein_coding - CCDS79745.1 1 188.0 8.0 0.6 12.6 29.1 0.0 -4,-5 0.4616 1 19.536 MINOR ENSMUSG00000036202 Rif1 ENSMUST00000125376 ENSMUSP00000154538 TRANSLATION protein_coding start - 1 731.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0089 10 -2.0 MINOR ENSMUSG00000036202 Rif1 ENSMUST00000152178 ENSMUSP00000154009 TRANSLATION protein_coding start - 1 535.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0043 7 -2.0 MINOR ENSMUSG00000036202 Rif1 ENSMUST00000125322 ENSMUSP00000154086 TRANSLATION nonsense_mediated_decay start - 1 740.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0092 10 -2.0 MINOR ENSMUSG00000036202 Rif1 ENSMUST00000145130 - NO_TRANSLATION retained_intron ENSMUSG00000036202 Rif1 ENSMUST00000126218 ENSMUSP00000153998 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000036202 Rif1 ENSMUST00000125116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036202 Rif1 ENSMUST00000112693 ENSMUSP00000108313 TRANSLATION protein_coding - CCDS50583.1 5 2426.0 0.0 1.765 0.0 248.9 0.0 -4,-5 1.0 26 12.0 PRINCIPAL:1 ENSMUSG00000017723 Wfdc2 ENSMUST00000109345 ENSMUSP00000104969 TRANSLATION protein_coding - - 3 122.0 0.0 1.94 4.9 81.2 0.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000017723 Wfdc2 ENSMUST00000125051 ENSMUSP00000119391 TRANSLATION protein_coding stop - 3 131.0 0.0 0.64 0.0 35.7 0.0 -4,-1 0.001 1 -2.0 MINOR ENSMUSG00000017723 Wfdc2 ENSMUST00000146270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017723 Wfdc2 ENSMUST00000017867 ENSMUSP00000017867 TRANSLATION protein_coding - CCDS17040.1 1 174.0 0.0 1.94 0.1 81.2 0.0 3,-2 0.3541 4 12.0 MINOR ENSMUSG00000017723 Wfdc2 ENSMUST00000109344 ENSMUSP00000104968 TRANSLATION protein_coding - - 3 74.0 0.0 1.3 0.0 45.5 0.0 4,-1 0.0011 3 7.38 MINOR ENSMUSG00000094932 Gm2007 ENSMUST00000177981 ENSMUSP00000136743 TRANSLATION protein_coding - - 5 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000094932 Gm2007 ENSMUST00000178133 ENSMUSP00000137539 TRANSLATION protein_coding - - 5 498.0 59.0 2.3 0.1 394.9 0.0 -4,-5 0.8042 - 18.0 PRINCIPAL:1 ENSMUSG00000029419 Ajm1 ENSMUST00000188161 ENSMUSP00000140763 TRANSLATION protein_coding - CCDS50532.1 - 974.0 8.0 0.0 5.3 0.0 0.0 -4,-5 1.0 20 8.0 PRINCIPAL:1 ENSMUSG00000029419 Ajm1 ENSMUST00000191602 ENSMUSP00000140109 TRANSLATION protein_coding - CCDS50532.1 2 974.0 8.0 0.0 5.3 0.0 0.0 -4,-5 1.0 20 8.0 PRINCIPAL:1 ENSMUSG00000029419 Ajm1 ENSMUST00000114217 ENSMUSP00000109855 TRANSLATION protein_coding - CCDS50532.1 2 974.0 8.0 0.0 5.3 0.0 0.0 -4,-5 1.0 20 8.0 PRINCIPAL:1 ENSMUSG00000029419 Ajm1 ENSMUST00000187017 ENSMUSP00000139598 TRANSLATION protein_coding stop - 3 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0274 - -2.0 MINOR ENSMUSG00000036504 Phpt1 ENSMUST00000147096 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036504 Phpt1 ENSMUST00000039156 ENSMUSP00000037417 TRANSLATION protein_coding - CCDS15781.1 1 124.0 0.0 3.0 17.5 141.4 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000027465 Tbc1d20 ENSMUST00000140482 - NO_TRANSLATION retained_intron ENSMUSG00000027465 Tbc1d20 ENSMUST00000141373 - NO_TRANSLATION retained_intron ENSMUSG00000027465 Tbc1d20 ENSMUST00000147591 ENSMUSP00000119209 TRANSLATION protein_coding stop - 5 155.0 0.0 4.75 0.0 64.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027465 Tbc1d20 ENSMUST00000144252 ENSMUSP00000122542 TRANSLATION protein_coding stop - 3 80.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027465 Tbc1d20 ENSMUST00000028963 ENSMUSP00000028963 TRANSLATION protein_coding - CCDS16880.1 1 402.0 0.0 7.9 13.6 97.3 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000067847 Romo1 ENSMUST00000119950 ENSMUSP00000113943 TRANSLATION protein_coding - CCDS38296.1 2 79.0 0.0 2.0 36.9 90.4 1.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000067847 Romo1 ENSMUST00000109597 ENSMUSP00000105226 TRANSLATION protein_coding - CCDS38296.1 1 79.0 0.0 2.0 36.9 90.4 1.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000067847 Romo1 ENSMUST00000088610 ENSMUSP00000085981 TRANSLATION protein_coding - CCDS38296.1 1 79.0 0.0 2.0 36.9 90.4 1.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000067847 Romo1 ENSMUST00000109598 ENSMUSP00000105227 TRANSLATION protein_coding - CCDS38296.1 5 79.0 0.0 2.0 36.9 90.4 1.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000018209 Stk4 ENSMUST00000088291 ENSMUSP00000085629 TRANSLATION protein_coding - - 1 126.0 0.0 1.32 0.0 85.7 0.0 -4,-2 0.0 4 0.0 MINOR ENSMUSG00000018209 Stk4 ENSMUST00000137866 ENSMUSP00000116745 TRANSLATION protein_coding start - 2 201.0 0.0 1.32 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000018209 Stk4 ENSMUST00000018353 ENSMUSP00000018353 TRANSLATION protein_coding - CCDS17021.1 1 487.0 19.0 8.73 25.2 329.8 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000018209 Stk4 ENSMUST00000134078 ENSMUSP00000122440 TRANSLATION protein_coding stop - 3 113.0 14.0 2.75 0.0 78.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000018209 Stk4 ENSMUST00000153319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027004 Frzb ENSMUST00000142459 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027004 Frzb ENSMUST00000028389 ENSMUSP00000028389 TRANSLATION protein_coding - CCDS16176.1 1 323.0 0.0 1.1 5.8 178.1 0.0 4,-1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000027220 Syt13 ENSMUST00000028648 ENSMUSP00000028648 TRANSLATION protein_coding - CCDS16451.1 1 426.0 3.0 3.08 10.8 72.8 0.0 0,-4 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000025716 Myo3a ENSMUST00000153002 ENSMUSP00000120573 TRANSLATION protein_coding stop - 5 753.0 33.0 12.93 0.0 643.0 0.0 -4,-5 0.0187 - -2.0 MINOR ENSMUSG00000025716 Myo3a ENSMUST00000149423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025716 Myo3a ENSMUST00000044749 ENSMUSP00000046329 TRANSLATION protein_coding - CCDS84477.1 5 1621.0 33.0 17.595 0.0 900.1 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000025716 Myo3a ENSMUST00000138863 ENSMUSP00000116185 TRANSLATION protein_coding start - 5 683.0 0.0 2.765 0.0 113.7 0.0 -4,-6 0.0016 - -2.0 MINOR ENSMUSG00000025716 Myo3a ENSMUST00000138850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025716 Myo3a ENSMUST00000142435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089859 Or4x18 ENSMUST00000214797 ENSMUSP00000148860 TRANSLATION protein_coding - CCDS57179.1 3 309.0 0.0 1.0 11.8 169.8 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000089859 Or4x18 ENSMUST00000077123 ENSMUSP00000076371 TRANSLATION protein_coding - CCDS57179.1 - 309.0 0.0 1.0 11.8 169.8 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000089859 Or4x18 ENSMUST00000216915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075382 Or1n1b ENSMUST00000215925 ENSMUSP00000150011 TRANSLATION protein_coding - CCDS15986.1 5 311.0 0.0 1.0 8.6 189.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075382 Or1n1b ENSMUST00000100149 ENSMUSP00000097726 TRANSLATION protein_coding - CCDS15986.1 - 311.0 0.0 1.0 8.6 189.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075382 Or1n1b ENSMUST00000217215 ENSMUSP00000149378 TRANSLATION protein_coding - CCDS15986.1 5 311.0 0.0 1.0 8.6 189.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075145 Or5d16 ENSMUST00000214641 ENSMUSP00000151048 TRANSLATION protein_coding - CCDS16316.1 5 314.0 0.0 1.0 12.5 150.1 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075145 Or5d16 ENSMUST00000099843 ENSMUSP00000097431 TRANSLATION protein_coding - CCDS16316.1 - 314.0 0.0 1.0 12.5 150.1 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075145 Or5d16 ENSMUST00000215903 ENSMUSP00000149428 TRANSLATION protein_coding - CCDS16316.1 5 314.0 0.0 1.0 12.5 150.1 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025781 Atp5f1c ENSMUST00000114896 ENSMUSP00000110546 TRANSLATION protein_coding - CCDS50497.1 1 274.0 5.0 6.83 3.3 271.4 0.0 -4,-7 0.2984 13 13.284 MINOR ENSMUSG00000025781 Atp5f1c ENSMUST00000139810 ENSMUSP00000123100 TRANSLATION protein_coding stop - 5 154.0 0.0 3.83 0.0 121.7 0.0 -4,-7 0.0 10 -2.0 MINOR ENSMUSG00000025781 Atp5f1c ENSMUST00000153554 ENSMUSP00000116368 TRANSLATION protein_coding stop - 3 171.0 0.0 4.33 0.0 138.1 0.0 -4,-7 0.0 10 -2.0 MINOR ENSMUSG00000025781 Atp5f1c ENSMUST00000130067 ENSMUSP00000117182 TRANSLATION protein_coding stop - 3 101.0 0.0 2.33 0.0 97.7 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000025781 Atp5f1c ENSMUST00000114897 ENSMUSP00000110547 TRANSLATION protein_coding - CCDS38045.1 1 298.0 5.0 6.83 33.3 271.4 0.0 -1,1 1.0 13 17.0 PRINCIPAL:4 ENSMUSG00000025781 Atp5f1c ENSMUST00000026887 ENSMUSP00000026887 TRANSLATION protein_coding - - 5 297.0 5.0 6.83 33.3 271.4 0.0 -1,1 0.861 13 17.0 ALTERNATIVE:1 ENSMUSG00000025781 Atp5f1c ENSMUST00000145530 ENSMUSP00000116508 TRANSLATION protein_coding stop - 5 188.0 0.0 4.83 0.0 147.9 0.0 -4,-7 0.0004 11 -2.0 MINOR ENSMUSG00000027233 Patl2 ENSMUST00000028665 ENSMUSP00000028665 TRANSLATION protein_coding - CCDS16653.1 1 529.0 0.0 2.622 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000081234 Or12e8 ENSMUST00000215163 ENSMUSP00000149911 TRANSLATION protein_coding - CCDS16287.1 2 314.0 0.0 1.0 9.4 184.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000081234 Or12e8 ENSMUST00000058737 ENSMUSP00000051931 TRANSLATION protein_coding - CCDS16287.1 - 314.0 0.0 1.0 9.4 184.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049252 Lrp1b ENSMUST00000203080 ENSMUSP00000145278 TRANSLATION protein_coding stop - 5 781.0 46.0 11.79 0.0 395.1 0.0 1,-3 0.0058 9 -2.0 MINOR ENSMUSG00000049252 Lrp1b ENSMUST00000204204 ENSMUSP00000145045 TRANSLATION protein_coding - - 2 68.0 7.0 0.8 0.0 48.3 0.0 1,-3 0.0091 - 0.0 MINOR ENSMUSG00000049252 Lrp1b ENSMUST00000129974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049252 Lrp1b ENSMUST00000133104 - NO_TRANSLATION retained_intron ENSMUSG00000049252 Lrp1b ENSMUST00000185258 ENSMUSP00000139874 TRANSLATION protein_coding start - 5 157.0 0.0 0.15 0.0 0.0 2.0 -4,-2 0.0015 1 -2.0 MINOR ENSMUSG00000049252 Lrp1b ENSMUST00000138700 - NO_TRANSLATION retained_intron ENSMUSG00000049252 Lrp1b ENSMUST00000167270 ENSMUSP00000129192 TRANSLATION protein_coding start/stop - 5 3357.0 87.0 39.172 0.0 1313.1 0.0 -4,-5 0.1481 44 -2.0 MINOR ENSMUSG00000049252 Lrp1b ENSMUST00000142546 ENSMUSP00000117212 TRANSLATION protein_coding start - 1 798.0 16.0 6.526 0.0 111.6 2.0 -4,-5 0.0019 5 -2.0 MINOR ENSMUSG00000049252 Lrp1b ENSMUST00000142688 ENSMUSP00000144957 TRANSLATION protein_coding - - 1 63.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0115 - 0.0 MINOR ENSMUSG00000049252 Lrp1b ENSMUST00000052550 ENSMUSP00000054275 TRANSLATION protein_coding - CCDS84520.1 1 4599.0 139.0 51.548 2.1 1761.6 2.0 1,-3 1.0 52 19.0 PRINCIPAL:1 ENSMUSG00000049252 Lrp1b ENSMUST00000203015 ENSMUSP00000145066 TRANSLATION protein_coding start/stop - 5 288.0 7.0 2.086 0.0 0.0 2.0 -4,-6 0.0015 - -2.0 MINOR ENSMUSG00000049252 Lrp1b ENSMUST00000134032 - NO_TRANSLATION retained_intron ENSMUSG00000027551 Zfp64 ENSMUST00000136242 - NO_TRANSLATION retained_intron ENSMUSG00000027551 Zfp64 ENSMUST00000109161 ENSMUSP00000104789 TRANSLATION protein_coding - - 1 272.0 17.0 1.8 0.0 69.8 0.0 -4,-5 0.0 2 1.242 MINOR ENSMUSG00000027551 Zfp64 ENSMUST00000124599 ENSMUSP00000116460 TRANSLATION protein_coding stop - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000027551 Zfp64 ENSMUST00000087971 ENSMUSP00000085285 TRANSLATION protein_coding - CCDS50804.1 1 676.0 39.0 2.0 8.2 221.3 0.0 -4,-5 1.0 3 10.638 MINOR ENSMUSG00000027551 Zfp64 ENSMUST00000109162 ENSMUSP00000104790 TRANSLATION protein_coding - - 2 643.0 55.0 4.18 5.3 200.6 0.0 -4,-5 0.6552 2 18.549 PRINCIPAL:1 ENSMUSG00000099820 Or5m9b ENSMUST00000164985 ENSMUSP00000130843 TRANSLATION protein_coding - CCDS16236.1 - 310.0 0.0 1.0 12.5 173.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027420 Bfsp1 ENSMUST00000099296 ENSMUSP00000096899 TRANSLATION protein_coding - CCDS71154.1 1 669.0 0.0 0.0 0.1 43.7 0.0 -4,-2 0.5827 13 0.0 ALTERNATIVE:2 ENSMUSG00000027420 Bfsp1 ENSMUST00000028907 ENSMUSP00000028907 TRANSLATION protein_coding - CCDS16811.1 1 663.0 0.0 0.0 0.1 41.4 0.0 -4,-2 0.8533 13 0.0 PRINCIPAL:2 ENSMUSG00000054160 Nkx2-4 ENSMUST00000067020 ENSMUSP00000066690 TRANSLATION protein_coding - CCDS16833.1 1 354.0 0.0 0.6 1.4 71.8 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000040549 Ckap5 ENSMUST00000111337 ENSMUSP00000106969 TRANSLATION protein_coding - - 5 1972.0 0.0 18.548 1.0 93.1 0.0 -4,-5 0.3241 70 12.0 MINOR ENSMUSG00000040549 Ckap5 ENSMUST00000147809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040549 Ckap5 ENSMUST00000111338 ENSMUSP00000106970 TRANSLATION protein_coding - CCDS50640.1 1 2032.0 0.0 18.548 15.8 93.1 0.0 -4,-5 1.0 72 16.0 PRINCIPAL:1 ENSMUSG00000040549 Ckap5 ENSMUST00000133633 - NO_TRANSLATION retained_intron ENSMUSG00000040549 Ckap5 ENSMUST00000129118 - NO_TRANSLATION retained_intron ENSMUSG00000040549 Ckap5 ENSMUST00000123253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040549 Ckap5 ENSMUST00000139433 - NO_TRANSLATION retained_intron ENSMUSG00000040549 Ckap5 ENSMUST00000046769 ENSMUSP00000046263 TRANSLATION protein_coding - CCDS16433.1 1 2011.0 0.0 18.548 4.1 93.1 0.0 -4,-5 0.5956 72 12.836 MINOR ENSMUSG00000040549 Ckap5 ENSMUST00000099716 ENSMUSP00000097303 TRANSLATION protein_coding - CCDS50640.1 1 2032.0 0.0 18.548 15.8 93.1 0.0 -4,-5 1.0 72 16.0 PRINCIPAL:1 ENSMUSG00000026734 4921504E06Rik ENSMUST00000062060 ENSMUSP00000058720 TRANSLATION protein_coding - CCDS15716.1 1 560.0 0.0 0.0 0.0 214.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000026734 4921504E06Rik ENSMUST00000131199 - NO_TRANSLATION retained_intron ENSMUSG00000013465 Nelfb ENSMUST00000146729 - NO_TRANSLATION retained_intron ENSMUSG00000013465 Nelfb ENSMUST00000128876 - NO_TRANSLATION retained_intron ENSMUSG00000013465 Nelfb ENSMUST00000138199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013465 Nelfb ENSMUST00000129140 - NO_TRANSLATION retained_intron ENSMUSG00000013465 Nelfb ENSMUST00000124900 ENSMUSP00000115296 TRANSLATION protein_coding start/stop - 5 144.0 0.0 4.0 0.0 150.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000013465 Nelfb ENSMUST00000147890 - NO_TRANSLATION retained_intron ENSMUSG00000013465 Nelfb ENSMUST00000059849 ENSMUSP00000057731 TRANSLATION protein_coding - - 1 631.0 0.0 13.16 2.2 811.2 0.0 -4,-7 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000013465 Nelfb ENSMUST00000140934 ENSMUSP00000115698 TRANSLATION protein_coding start/stop - 3 204.0 0.0 5.41 0.0 341.9 0.0 -4,-5 0.001 4 -2.0 MINOR ENSMUSG00000075028 Prdm11 ENSMUST00000111274 ENSMUSP00000106905 TRANSLATION protein_coding - CCDS50647.1 5 565.0 4.0 2.55 0.0 23.1 0.0 -4,-5 0.1207 1 10.0 MINOR ENSMUSG00000075028 Prdm11 ENSMUST00000238863 ENSMUSP00000158933 TRANSLATION protein_coding - - - 1172.0 4.0 2.55 9.8 23.1 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000075028 Prdm11 ENSMUST00000130441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075028 Prdm11 ENSMUST00000147339 ENSMUSP00000122809 TRANSLATION protein_coding stop - 2 162.0 4.0 0.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000075028 Prdm11 ENSMUST00000178666 ENSMUSP00000136795 TRANSLATION protein_coding - CCDS50647.1 5 565.0 4.0 2.55 0.0 23.1 0.0 -4,-5 0.1207 1 10.0 MINOR ENSMUSG00000075028 Prdm11 ENSMUST00000111272 ENSMUSP00000106903 TRANSLATION protein_coding - - 5 461.0 4.0 1.75 0.0 73.5 0.0 -4,-5 0.0191 1 10.116 MINOR ENSMUSG00000027217 Tspan18 ENSMUST00000152141 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027217 Tspan18 ENSMUST00000154951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027217 Tspan18 ENSMUST00000028646 ENSMUSP00000028646 TRANSLATION protein_coding - CCDS38182.1 1 248.0 0.0 5.6 29.9 172.2 4.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027217 Tspan18 ENSMUST00000111265 ENSMUSP00000106896 TRANSLATION protein_coding - CCDS38182.1 5 248.0 0.0 5.6 29.9 172.2 4.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027217 Tspan18 ENSMUST00000181716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050645 Defb19 ENSMUST00000053180 ENSMUSP00000059585 TRANSLATION protein_coding - CCDS38277.1 1 83.0 0.0 1.0 3.1 29.2 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000079539 Obp2b ENSMUST00000114192 ENSMUSP00000109830 TRANSLATION protein_coding - CCDS38080.1 5 176.0 0.0 4.08 0.4 103.3 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000034032 Rpap1 ENSMUST00000136419 ENSMUSP00000138619 TRANSLATION nonsense_mediated_decay - - 1 167.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034032 Rpap1 ENSMUST00000048493 ENSMUSP00000037275 TRANSLATION protein_coding - CCDS16610.1 1 1409.0 0.0 0.0 0.1 149.7 0.0 -4,-5 1.0 16 6.0 PRINCIPAL:1 ENSMUSG00000034032 Rpap1 ENSMUST00000141800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034032 Rpap1 ENSMUST00000099529 ENSMUSP00000097127 TRANSLATION protein_coding - CCDS16610.1 1 1409.0 0.0 0.0 0.1 149.7 0.0 -4,-5 1.0 16 6.0 PRINCIPAL:1 ENSMUSG00000034032 Rpap1 ENSMUST00000156506 - NO_TRANSLATION retained_intron ENSMUSG00000034032 Rpap1 ENSMUST00000184294 ENSMUSP00000138873 TRANSLATION nonsense_mediated_decay - - 1 869.0 0.0 0.0 0.0 149.7 0.0 -4,-5 0.1085 10 -2.0 MINOR ENSMUSG00000034032 Rpap1 ENSMUST00000139311 - NO_TRANSLATION retained_intron ENSMUSG00000034032 Rpap1 ENSMUST00000110793 ENSMUSP00000106420 TRANSLATION protein_coding - CCDS16610.1 5 1409.0 0.0 0.0 0.1 149.7 0.0 -4,-5 1.0 16 6.0 PRINCIPAL:1 ENSMUSG00000034032 Rpap1 ENSMUST00000133146 - NO_TRANSLATION retained_intron ENSMUSG00000074971 Fibin ENSMUST00000099626 ENSMUSP00000097221 TRANSLATION protein_coding - CCDS16511.1 - 217.0 0.0 0.8 0.4 344.8 0.0 1,-3 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000038900 Rpl12 ENSMUST00000125415 - NO_TRANSLATION retained_intron ENSMUSG00000038900 Rpl12 ENSMUST00000126610 ENSMUSP00000117461 TRANSLATION protein_coding - CCDS15936.1 1 165.0 0.0 4.83 33.2 159.9 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000038900 Rpl12 ENSMUST00000134912 - NO_TRANSLATION retained_intron ENSMUSG00000038900 Rpl12 ENSMUST00000154340 - NO_TRANSLATION retained_intron ENSMUSG00000038900 Rpl12 ENSMUST00000144644 - NO_TRANSLATION retained_intron ENSMUSG00000038900 Rpl12 ENSMUST00000133842 - NO_TRANSLATION retained_intron ENSMUSG00000038900 Rpl12 ENSMUST00000102811 ENSMUSP00000141294 TRANSLATION nonsense_mediated_decay - - 2 84.0 0.0 0.5 0.0 0.0 0.0 -3,-1 0.0 - -2.0 MINOR ENSMUSG00000052406 Rexo4 ENSMUST00000128401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052406 Rexo4 ENSMUST00000135752 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052406 Rexo4 ENSMUST00000128130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052406 Rexo4 ENSMUST00000114020 ENSMUSP00000109653 TRANSLATION protein_coding - CCDS15819.1 1 432.0 9.0 4.82 0.0 70.5 0.0 -1,-3 0.3042 9 14.0 ALTERNATIVE:2 ENSMUSG00000052406 Rexo4 ENSMUST00000136710 ENSMUSP00000121599 TRANSLATION protein_coding stop - 5 363.0 9.0 3.32 0.0 52.9 0.0 -3,-5 0.0048 9 -2.0 MINOR ENSMUSG00000052406 Rexo4 ENSMUST00000064244 ENSMUSP00000070815 TRANSLATION protein_coding - - 1 409.0 9.0 4.82 0.3 70.5 0.0 -3,-5 0.7418 9 14.0 PRINCIPAL:2 ENSMUSG00000052406 Rexo4 ENSMUST00000139635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052406 Rexo4 ENSMUST00000145546 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052406 Rexo4 ENSMUST00000123126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041644 Slc5a12 ENSMUST00000127822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041644 Slc5a12 ENSMUST00000045972 ENSMUSP00000047340 TRANSLATION protein_coding - CCDS16512.1 1 623.0 0.0 5.755 0.0 139.3 13.0 -4,-5 0.0931 4 9.804 MINOR ENSMUSG00000041644 Slc5a12 ENSMUST00000146664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041644 Slc5a12 ENSMUST00000138497 - NO_TRANSLATION retained_intron ENSMUSG00000041644 Slc5a12 ENSMUST00000111026 ENSMUSP00000106655 TRANSLATION protein_coding - CCDS50656.1 1 619.0 0.0 6.355 8.7 155.9 14.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000061520 Or5w22 ENSMUST00000217113 ENSMUSP00000149859 TRANSLATION protein_coding - CCDS50627.1 - 307.0 0.0 1.0 13.0 162.1 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000067786 Nnat ENSMUST00000173041 ENSMUSP00000134109 TRANSLATION protein_coding - - 5 79.0 0.0 0.0 0.0 0.0 1.0 -1,-6 0.0763 - 0.0 MINOR ENSMUSG00000067786 Nnat ENSMUST00000153739 ENSMUSP00000129821 TRANSLATION protein_coding - CCDS38307.1 1 54.0 0.0 0.0 9.9 0.0 1.0 -1,-6 0.8565 - 2.67 ALTERNATIVE:1 ENSMUSG00000067786 Nnat ENSMUST00000088484 ENSMUSP00000085836 TRANSLATION protein_coding - CCDS71174.1 2 129.0 0.0 0.0 0.3 0.0 1.0 -1,-6 0.1439 - 0.0 MINOR ENSMUSG00000067786 Nnat ENSMUST00000152605 - NO_TRANSLATION retained_intron ENSMUSG00000067786 Nnat ENSMUST00000173793 ENSMUSP00000133487 TRANSLATION protein_coding - - 5 79.0 0.0 0.0 0.0 0.0 1.0 -1,-6 0.0763 - 0.0 MINOR ENSMUSG00000067786 Nnat ENSMUST00000173839 ENSMUSP00000133394 TRANSLATION protein_coding - CCDS79857.1 1 63.0 0.0 0.0 6.7 0.0 1.0 -1,-6 0.6251 - 1.71 MINOR ENSMUSG00000067786 Nnat ENSMUST00000134513 - NO_TRANSLATION retained_intron ENSMUSG00000067786 Nnat ENSMUST00000173595 ENSMUSP00000133397 TRANSLATION protein_coding - CCDS71175.1 2 125.0 0.0 0.0 9.2 0.0 1.0 -2,-6 0.8471 1 2.46 ALTERNATIVE:1 ENSMUSG00000067786 Nnat ENSMUST00000172487 ENSMUSP00000134415 TRANSLATION protein_coding - - 5 112.0 0.0 0.0 0.0 0.0 1.0 -3,-7 0.0185 - 0.0 MINOR ENSMUSG00000067786 Nnat ENSMUST00000109526 ENSMUSP00000105152 TRANSLATION protein_coding - CCDS38306.1 1 81.0 0.0 0.0 11.0 0.0 1.0 -2,-5 1.0 1 3.0 PRINCIPAL:4 ENSMUSG00000074679 Defb28 ENSMUST00000121912 ENSMUSP00000112697 TRANSLATION protein_coding - CCDS50751.1 1 89.0 0.0 0.0 0.0 27.1 0.0 0,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000037938 Chchd5 ENSMUST00000035481 ENSMUSP00000044253 TRANSLATION protein_coding - CCDS16721.1 1 110.0 0.0 2.0 11.0 58.3 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000037938 Chchd5 ENSMUST00000137881 - NO_TRANSLATION retained_intron ENSMUSG00000037938 Chchd5 ENSMUST00000149118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027010 Slc25a12 ENSMUST00000184169 ENSMUSP00000139371 TRANSLATION nonsense_mediated_decay - - 5 87.0 4.0 1.5 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000027010 Slc25a12 ENSMUST00000137916 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027010 Slc25a12 ENSMUST00000130715 - NO_TRANSLATION retained_intron ENSMUSG00000027010 Slc25a12 ENSMUST00000147553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027010 Slc25a12 ENSMUST00000151937 ENSMUSP00000122103 TRANSLATION protein_coding - CCDS16113.1 1 677.0 7.0 12.48 28.3 232.9 0.0 -4,-7 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000027010 Slc25a12 ENSMUST00000126493 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027010 Slc25a12 ENSMUST00000146653 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026981 Il1rn ENSMUST00000143423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026981 Il1rn ENSMUST00000114486 - NO_TRANSLATION retained_intron ENSMUSG00000026981 Il1rn ENSMUST00000114482 ENSMUSP00000110126 TRANSLATION protein_coding - CCDS38064.1 1 178.0 0.0 3.5 7.5 134.4 0.0 3,-2 1.0 2 10.0 PRINCIPAL:4 ENSMUSG00000026981 Il1rn ENSMUST00000114487 ENSMUSP00000110131 TRANSLATION protein_coding - CCDS15736.1 1 159.0 0.0 3.5 7.1 134.4 0.0 -4,-7 0.8171 2 9.876 ALTERNATIVE:1 ENSMUSG00000026981 Il1rn ENSMUST00000142093 ENSMUSP00000141269 TRANSLATION protein_coding - - 3 52.0 0.0 1.5 0.0 0.0 0.0 -4,-7 0.0 1 1.998 MINOR ENSMUSG00000026981 Il1rn ENSMUST00000114485 ENSMUSP00000110129 TRANSLATION protein_coding - CCDS50520.1 1 162.0 0.0 3.5 1.0 134.4 0.0 -4,-7 0.3163 2 8.0 MINOR ENSMUSG00000075267 Pjvk ENSMUST00000153471 ENSMUSP00000114409 TRANSLATION protein_coding stop - 3 73.0 0.0 0.5 0.0 47.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000075267 Pjvk ENSMUST00000099986 ENSMUSP00000097566 TRANSLATION protein_coding - CCDS38153.1 1 352.0 0.0 1.6914 19.5 141.0 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075267 Pjvk ENSMUST00000144817 ENSMUSP00000119264 TRANSLATION protein_coding stop - 3 190.0 0.0 1.1914 0.0 110.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000040007 Bahd1 ENSMUST00000151162 ENSMUSP00000118998 TRANSLATION protein_coding stop - 3 192.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000040007 Bahd1 ENSMUST00000036578 ENSMUSP00000043130 TRANSLATION protein_coding - CCDS38202.1 1 772.0 0.0 3.4 8.5 50.0 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000027335 Adra1d ENSMUST00000103184 ENSMUSP00000099473 TRANSLATION protein_coding - CCDS16764.1 1 562.0 0.0 0.4 0.4 258.7 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027009 Itga4 ENSMUST00000099972 ENSMUSP00000099718 TRANSLATION protein_coding - CCDS16168.1 1 1032.0 15.0 16.665 9.2 349.3 0.0 -1,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000027009 Itga4 ENSMUST00000126312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027009 Itga4 ENSMUST00000135919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027009 Itga4 ENSMUST00000155105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027009 Itga4 ENSMUST00000141094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033256 Shf ENSMUST00000048635 ENSMUSP00000045135 TRANSLATION protein_coding - CCDS16662.1 1 238.0 0.0 2.98 4.7 67.7 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000033256 Shf ENSMUST00000125826 ENSMUSP00000117099 TRANSLATION protein_coding start - 5 446.0 0.0 2.98 0.0 67.7 0.0 -4,-5 0.0328 5 -2.0 MINOR ENSMUSG00000033256 Shf ENSMUST00000151130 ENSMUSP00000114524 TRANSLATION protein_coding start - 5 364.0 0.0 0.0 1.0 0.0 0.0 -4,-7 0.0375 3 -2.0 MINOR ENSMUSG00000033256 Shf ENSMUST00000110531 ENSMUSP00000106160 TRANSLATION protein_coding - CCDS16662.1 5 238.0 0.0 2.98 4.7 67.7 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000033256 Shf ENSMUST00000143484 ENSMUSP00000120732 TRANSLATION protein_coding start/stop - 3 162.0 0.0 2.3985 0.0 67.7 0.0 -4,-5 0.0002 1 -2.0 MINOR ENSMUSG00000033256 Shf ENSMUST00000121237 ENSMUSP00000113923 TRANSLATION protein_coding - - 3 158.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000033256 Shf ENSMUST00000135848 - NO_TRANSLATION retained_intron ENSMUSG00000033256 Shf ENSMUST00000139819 ENSMUSP00000119980 TRANSLATION protein_coding start - 5 320.0 0.0 2.98 0.0 67.7 0.0 -4,-5 0.0189 2 -2.0 MINOR ENSMUSG00000033256 Shf ENSMUST00000110530 ENSMUSP00000106159 TRANSLATION protein_coding - - 5 232.0 0.0 2.98 0.0 67.7 0.0 -4,-5 0.0495 3 12.0 MINOR ENSMUSG00000033256 Shf ENSMUST00000110532 ENSMUSP00000106161 TRANSLATION protein_coding start - 5 296.0 0.0 1.73 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026826 Nr4a2 ENSMUST00000112627 ENSMUSP00000108246 TRANSLATION protein_coding - - 5 535.0 8.0 5.55 19.2 213.6 0.0 -4,-5 0.7169 1 20.284 MINOR ENSMUSG00000026826 Nr4a2 ENSMUST00000140165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026826 Nr4a2 ENSMUST00000128776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026826 Nr4a2 ENSMUST00000112629 ENSMUSP00000108248 TRANSLATION protein_coding - CCDS16043.1 5 598.0 8.0 5.55 32.9 213.6 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000026826 Nr4a2 ENSMUST00000028166 ENSMUSP00000028166 TRANSLATION protein_coding - CCDS16043.1 1 598.0 8.0 5.55 32.9 213.6 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000026826 Nr4a2 ENSMUST00000183542 ENSMUSP00000138824 TRANSLATION nonsense_mediated_decay - - 1 392.0 8.0 2.8 0.0 141.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037727 Avp ENSMUST00000046001 ENSMUSP00000035551 TRANSLATION protein_coding - CCDS16746.1 1 168.0 13.0 1.4 2.6 132.2 0.0 3,-1 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000026971 Itgb6 ENSMUST00000154764 ENSMUSP00000117815 TRANSLATION protein_coding stop - 5 755.0 11.0 11.15 2.0 510.7 1.0 0,-3 0.1341 6 -2.0 MINOR ENSMUSG00000026971 Itgb6 ENSMUST00000145009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026971 Itgb6 ENSMUST00000147906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026971 Itgb6 ENSMUST00000151035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026971 Itgb6 ENSMUST00000142696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026971 Itgb6 ENSMUST00000112517 ENSMUSP00000108136 TRANSLATION protein_coding - - 1 764.0 11.0 11.15 0.0 510.7 1.0 0,-3 0.0491 6 14.478 MINOR ENSMUSG00000026971 Itgb6 ENSMUST00000028348 ENSMUSP00000028348 TRANSLATION protein_coding - CCDS16060.1 1 787.0 11.0 11.75 17.6 549.4 1.0 0,-3 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000026971 Itgb6 ENSMUST00000059888 ENSMUSP00000054944 TRANSLATION protein_coding - CCDS16060.1 1 787.0 11.0 11.75 17.6 549.4 1.0 0,-3 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000026971 Itgb6 ENSMUST00000133887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026839 Upp2 ENSMUST00000230627 ENSMUSP00000154977 TRANSLATION protein_coding - - - 286.0 7.0 5.75 0.3 89.0 0.0 -4,-5 0.0385 - 16.998 MINOR ENSMUSG00000026839 Upp2 ENSMUST00000059102 ENSMUSP00000060437 TRANSLATION protein_coding - CCDS79797.1 1 338.0 7.0 6.25 0.0 89.0 0.0 -4,-6 0.1069 - 18.0 MINOR ENSMUSG00000026839 Upp2 ENSMUST00000128864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026839 Upp2 ENSMUST00000229829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026839 Upp2 ENSMUST00000102755 ENSMUSP00000099816 TRANSLATION protein_coding - CCDS16051.1 1 320.0 7.0 6.25 9.6 89.0 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000026839 Upp2 ENSMUST00000230667 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026839 Upp2 ENSMUST00000071543 ENSMUSP00000071474 TRANSLATION protein_coding - CCDS71055.1 1 325.0 7.0 5.45 0.0 78.0 0.0 -4,-1 0.0771 - 15.654 MINOR ENSMUSG00000026839 Upp2 ENSMUST00000137007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026839 Upp2 ENSMUST00000229923 ENSMUSP00000155044 TRANSLATION protein_coding - - - 306.0 7.0 5.25 0.0 74.4 0.0 -4,-7 0.0116 - 15.018 MINOR ENSMUSG00000026839 Upp2 ENSMUST00000135737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027442 Cst8 ENSMUST00000109947 ENSMUSP00000105573 TRANSLATION protein_coding - CCDS16848.1 3 142.0 0.0 2.75 1.5 79.9 0.0 4,-1 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000027442 Cst8 ENSMUST00000154737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027442 Cst8 ENSMUST00000028931 ENSMUSP00000028931 TRANSLATION protein_coding - CCDS16848.1 1 142.0 0.0 2.75 1.5 79.9 0.0 4,-1 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000016256 Ctsz ENSMUST00000016400 ENSMUSP00000016400 TRANSLATION protein_coding - CCDS17152.1 1 306.0 4.0 5.6 3.5 170.6 0.0 4,-2 1.0 7 17.0 PRINCIPAL:1 ENSMUSG00000062272 Or10ag59 ENSMUST00000213315 ENSMUSP00000151009 TRANSLATION protein_coding - CCDS16296.1 2 314.0 0.0 1.0 8.3 176.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062272 Or10ag59 ENSMUST00000081034 ENSMUSP00000079823 TRANSLATION protein_coding - CCDS16296.1 - 314.0 0.0 1.0 8.3 176.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062272 Or10ag59 ENSMUST00000214773 ENSMUSP00000150986 TRANSLATION protein_coding - CCDS16296.1 5 314.0 0.0 1.0 8.3 176.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036053 Fmnl2 ENSMUST00000090952 ENSMUSP00000088472 TRANSLATION protein_coding - - 5 1091.0 0.0 15.11 9.4 617.2 0.0 -4,-5 0.799 12 10.931 ALTERNATIVE:1 ENSMUSG00000036053 Fmnl2 ENSMUST00000049483 ENSMUSP00000047260 TRANSLATION protein_coding - CCDS38124.1 5 1083.0 0.0 15.11 9.6 617.2 0.0 -4,-5 1.0 12 11.0 PRINCIPAL:4 ENSMUSG00000036053 Fmnl2 ENSMUST00000127122 ENSMUSP00000118658 TRANSLATION protein_coding - - 5 1086.0 0.0 15.11 7.4 617.2 0.0 -4,-5 0.7763 12 10.232 ALTERNATIVE:1 ENSMUSG00000036053 Fmnl2 ENSMUST00000155586 ENSMUSP00000117822 TRANSLATION protein_coding - - 1 1085.0 0.0 15.11 7.3 617.2 0.0 -4,-5 0.7818 11 10.199 ALTERNATIVE:1 ENSMUSG00000038840 Birc7 ENSMUST00000137859 - NO_TRANSLATION retained_intron ENSMUSG00000038840 Birc7 ENSMUST00000108875 ENSMUSP00000104503 TRANSLATION protein_coding - CCDS50840.1 5 285.0 12.0 3.55 0.1 114.5 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000026842 Abl1 ENSMUST00000156736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026842 Abl1 ENSMUST00000124726 - NO_TRANSLATION retained_intron ENSMUSG00000026842 Abl1 ENSMUST00000127714 - NO_TRANSLATION retained_intron ENSMUSG00000026842 Abl1 ENSMUST00000028190 ENSMUSP00000028190 TRANSLATION protein_coding - CCDS15901.1 1 1123.0 18.0 9.45 0.4 566.4 0.0 -4,-5 0.3874 12 16.002 MINOR ENSMUSG00000026842 Abl1 ENSMUST00000075759 ENSMUSP00000075167 TRANSLATION protein_coding - CCDS50563.1 1 1142.0 18.0 10.45 1.1 566.4 0.0 -4,-7 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000026842 Abl1 ENSMUST00000135233 ENSMUSP00000141320 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026842 Abl1 ENSMUST00000123471 ENSMUSP00000142297 TRANSLATION protein_coding stop - 5 64.0 0.0 1.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026842 Abl1 ENSMUST00000146537 - NO_TRANSLATION retained_intron ENSMUSG00000026842 Abl1 ENSMUST00000142554 ENSMUSP00000142123 TRANSLATION nonsense_mediated_decay - - 1 78.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026842 Abl1 ENSMUST00000124089 ENSMUSP00000117748 TRANSLATION protein_coding stop - 1 114.0 0.0 2.5 0.0 50.8 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000089953 Rnf224 ENSMUST00000205192 ENSMUSP00000145127 TRANSLATION protein_coding - - - 156.0 8.0 1.0 5.1 30.7 0.0 -4,-5 0.8818 - 20.0 PRINCIPAL:1 ENSMUSG00000089953 Rnf224 ENSMUST00000091318 ENSMUSP00000145470 TRANSLATION protein_coding - - 1 156.0 8.0 1.0 5.1 30.7 0.0 -4,-5 0.8818 - 20.0 PRINCIPAL:1 ENSMUSG00000026751 Nr5a1 ENSMUST00000112883 ENSMUSP00000108504 TRANSLATION protein_coding - CCDS16011.1 1 462.0 8.0 5.6 8.3 198.1 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000026751 Nr5a1 ENSMUST00000028084 ENSMUSP00000028084 TRANSLATION protein_coding - CCDS16011.1 1 462.0 8.0 5.6 8.3 198.1 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000026751 Nr5a1 ENSMUST00000149690 - NO_TRANSLATION retained_intron ENSMUSG00000048486 Fitm2 ENSMUST00000109418 ENSMUSP00000105045 TRANSLATION protein_coding - CCDS38315.1 1 262.0 0.0 2.0 14.8 69.4 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000075151 Or5w13 ENSMUST00000077471 ENSMUSP00000076681 TRANSLATION protein_coding - CCDS16303.1 - 310.0 0.0 1.0 11.4 140.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027379 Bub1 ENSMUST00000133943 - NO_TRANSLATION retained_intron ENSMUSG00000027379 Bub1 ENSMUST00000153048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027379 Bub1 ENSMUST00000143824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027379 Bub1 ENSMUST00020183811 ENSMUSP00001091667 TRANSLATION protein_coding - - - 1058.0 0.0 10.08 0.1 194.3 0.0 -4,-5 0.681 4 8.0 ALTERNATIVE:2 ENSMUSG00000027379 Bub1 ENSMUST00000028858 ENSMUSP00000028858 TRANSLATION protein_coding - CCDS50706.1 1 1059.0 0.0 10.08 0.1 194.3 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000027379 Bub1 ENSMUST00000138624 - NO_TRANSLATION retained_intron ENSMUSG00000070730 Rmdn3 ENSMUST00000130249 - NO_TRANSLATION retained_intron ENSMUSG00000070730 Rmdn3 ENSMUST00000156332 - NO_TRANSLATION retained_intron ENSMUSG00000070730 Rmdn3 ENSMUST00000094695 ENSMUSP00000092283 TRANSLATION protein_coding - CCDS16591.1 1 470.0 0.0 6.5 9.8 0.0 1.0 -2,-6 1.0 14 9.0 PRINCIPAL:1 ENSMUSG00000070730 Rmdn3 ENSMUST00000139519 ENSMUSP00000115973 TRANSLATION protein_coding stop - 1 68.0 0.0 0.0 0.0 0.0 1.0 -2,-6 0.0114 1 -2.0 MINOR ENSMUSG00000070730 Rmdn3 ENSMUST00000135419 ENSMUSP00000123373 TRANSLATION protein_coding stop - 5 82.0 0.0 0.0 0.0 0.0 1.0 -2,-6 0.0114 1 -2.0 MINOR ENSMUSG00000070730 Rmdn3 ENSMUST00000127965 - NO_TRANSLATION retained_intron ENSMUSG00000070730 Rmdn3 ENSMUST00000129351 ENSMUSP00000119498 TRANSLATION protein_coding stop - 3 72.0 0.0 0.0 0.0 0.0 1.0 -2,-6 0.0114 1 -2.0 MINOR ENSMUSG00000068479 Mfap1a ENSMUST00000089926 ENSMUSP00000087372 TRANSLATION protein_coding - CCDS16648.1 1 439.0 0.0 3.2 27.9 261.7 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027566 Psma7 ENSMUST00000155898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027566 Psma7 ENSMUST00000132431 - NO_TRANSLATION retained_intron ENSMUSG00000027566 Psma7 ENSMUST00000129529 ENSMUSP00000156190 TRANSLATION protein_coding - - 5 223.0 0.0 5.75 0.0 268.6 0.0 -4,-5 0.0126 7 10.002 MINOR ENSMUSG00000027566 Psma7 ENSMUST00000126021 - NO_TRANSLATION retained_intron ENSMUSG00000027566 Psma7 ENSMUST00000135650 - NO_TRANSLATION retained_intron ENSMUSG00000027566 Psma7 ENSMUST00000029082 ENSMUSP00000029082 TRANSLATION protein_coding - CCDS17166.1 1 248.0 0.0 6.75 11.9 268.6 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000027566 Psma7 ENSMUST00000142042 - NO_TRANSLATION retained_intron ENSMUSG00000035576 L3mbtl1 ENSMUST00000153416 - NO_TRANSLATION retained_intron ENSMUSG00000035576 L3mbtl1 ENSMUST00000137108 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035576 L3mbtl1 ENSMUST00000035751 ENSMUSP00000044038 TRANSLATION protein_coding - CCDS38314.1 5 826.0 0.0 10.3 0.1 401.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035576 L3mbtl1 ENSMUST00000149447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035576 L3mbtl1 ENSMUST00000124264 ENSMUSP00000116118 TRANSLATION protein_coding stop - 1 144.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035576 L3mbtl1 ENSMUST00000156954 ENSMUSP00000123217 TRANSLATION protein_coding stop - 5 244.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000035576 L3mbtl1 ENSMUST00000125296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026975 Dph7 ENSMUST00000146382 - NO_TRANSLATION retained_intron ENSMUSG00000026975 Dph7 ENSMUST00000135339 ENSMUSP00000142067 TRANSLATION nonsense_mediated_decay - - 5 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.014 - -2.0 MINOR ENSMUSG00000026975 Dph7 ENSMUST00000143253 ENSMUSP00000142315 TRANSLATION nonsense_mediated_decay - - 5 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.014 - -2.0 MINOR ENSMUSG00000026975 Dph7 ENSMUST00000124383 ENSMUSP00000142220 TRANSLATION nonsense_mediated_decay - - 2 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.014 - -2.0 MINOR ENSMUSG00000026975 Dph7 ENSMUST00000153375 ENSMUSP00000141890 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.014 - -2.0 MINOR ENSMUSG00000026975 Dph7 ENSMUST00000126909 ENSMUSP00000141547 TRANSLATION nonsense_mediated_decay - - 1 93.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0197 2 -2.0 MINOR ENSMUSG00000026975 Dph7 ENSMUST00000028351 ENSMUSP00000028351 TRANSLATION protein_coding - CCDS15743.1 1 477.0 0.0 2.17 0.0 0.0 0.0 -4,-6 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000036093 Arl5a ENSMUST00000130357 - NO_TRANSLATION retained_intron ENSMUSG00000036093 Arl5a ENSMUST00000036541 ENSMUSP00000041756 TRANSLATION protein_coding - CCDS16033.1 1 179.0 17.0 4.5 34.9 220.8 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000075194 Or8k18 ENSMUST00000216185 ENSMUSP00000149360 TRANSLATION protein_coding - CCDS16248.1 5 308.0 0.0 1.0 0.0 180.2 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075194 Or8k18 ENSMUST00000099899 ENSMUSP00000097483 TRANSLATION protein_coding - CCDS16248.1 - 308.0 0.0 1.0 0.0 180.2 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075384 Or1j1 ENSMUST00000100151 ENSMUSP00000097728 TRANSLATION protein_coding - CCDS15982.1 - 313.0 0.0 1.0 10.1 204.2 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075384 Or1j1 ENSMUST00000213988 ENSMUSP00000149118 TRANSLATION protein_coding - CCDS15982.1 5 313.0 0.0 1.0 10.1 204.2 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078878 Gm14305 ENSMUST00000108981 ENSMUSP00000104609 TRANSLATION protein_coding - CCDS38368.1 2 498.0 59.0 2.3 0.1 392.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078878 Gm14305 ENSMUST00000108983 ENSMUSP00000104611 TRANSLATION protein_coding - CCDS38368.1 3 498.0 59.0 2.3 0.1 392.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078878 Gm14305 ENSMUST00000108980 ENSMUSP00000104608 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078919 Dpm1 ENSMUST00000142482 - NO_TRANSLATION retained_intron ENSMUSG00000078919 Dpm1 ENSMUST00000153258 - NO_TRANSLATION retained_intron ENSMUSG00000078919 Dpm1 ENSMUST00000109193 ENSMUSP00000104816 TRANSLATION protein_coding - - 5 208.0 8.0 6.08 0.0 119.4 0.0 -4,-5 0.0014 9 12.486 MINOR ENSMUSG00000078919 Dpm1 ENSMUST00000156800 - NO_TRANSLATION retained_intron ENSMUSG00000078919 Dpm1 ENSMUST00000150437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078919 Dpm1 ENSMUST00000154111 ENSMUSP00000118776 TRANSLATION protein_coding - CCDS17109.1 1 260.0 12.0 7.08 9.3 133.6 0.0 -4,0 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000078919 Dpm1 ENSMUST00000141036 - NO_TRANSLATION retained_intron ENSMUSG00000078919 Dpm1 ENSMUST00000099072 ENSMUSP00000096671 TRANSLATION nonsense_mediated_decay start - 5 121.0 11.0 3.25 0.0 92.3 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000078919 Dpm1 ENSMUST00000140249 - NO_TRANSLATION retained_intron ENSMUSG00000078919 Dpm1 ENSMUST00000136582 - NO_TRANSLATION retained_intron ENSMUSG00000068290 Ddrgk1 ENSMUST00000134044 ENSMUSP00000114535 TRANSLATION nonsense_mediated_decay start - 5 59.0 0.0 0.0 0.0 40.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068290 Ddrgk1 ENSMUST00000124559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068290 Ddrgk1 ENSMUST00000135167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068290 Ddrgk1 ENSMUST00000089559 ENSMUSP00000086988 TRANSLATION protein_coding - CCDS38243.1 1 315.0 0.0 1.9 5.6 242.8 0.0 1,-4 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000068290 Ddrgk1 ENSMUST00000153271 - NO_TRANSLATION retained_intron ENSMUSG00000068290 Ddrgk1 ENSMUST00000135072 ENSMUSP00000121190 TRANSLATION protein_coding stop - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026798 Coq4 ENSMUST00000148791 ENSMUSP00000116944 TRANSLATION protein_coding stop - 5 199.0 0.0 5.08 0.0 237.0 0.0 -4,0 0.0006 5 -2.0 MINOR ENSMUSG00000026798 Coq4 ENSMUST00000142694 - NO_TRANSLATION retained_intron ENSMUSG00000026798 Coq4 ENSMUST00000138233 - NO_TRANSLATION retained_intron ENSMUSG00000026798 Coq4 ENSMUST00000176348 ENSMUSP00000135687 TRANSLATION nonsense_mediated_decay - - 1 140.0 0.0 2.75 0.0 104.1 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000026798 Coq4 ENSMUST00000028137 ENSMUSP00000028137 TRANSLATION protein_coding - CCDS15857.1 1 266.0 0.0 6.41 5.2 321.3 0.0 -4,0 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000026798 Coq4 ENSMUST00000143616 ENSMUSP00000120160 TRANSLATION nonsense_mediated_decay - - 1 140.0 0.0 2.75 0.0 104.1 0.0 -4,0 0.0 4 -2.0 MINOR ENSMUSG00000100642 Gm28230 ENSMUST00000053932 ENSMUSP00000051355 TRANSLATION nonsense_mediated_decay,RT - - 1 144.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5812 - -2.0 PRINCIPAL:1 ENSMUSG00000027157 Potefam1 ENSMUST00000132464 - NO_TRANSLATION retained_intron ENSMUSG00000027157 Potefam1 ENSMUST00000240551 ENSMUSP00000159484 TRANSLATION nonsense_mediated_decay - - - 2231.0 0.0 5.55 0.0 176.2 0.0 -4,-6 0.2101 1 -2.0 MINOR ENSMUSG00000027157 Potefam1 ENSMUST00000240549 ENSMUSP00000159482 TRANSLATION protein_coding - - - 2320.0 0.0 5.55 0.0 205.5 0.0 -4,-6 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000027157 Potefam1 ENSMUST00000028577 - NO_TRANSLATION retained_intron ENSMUSG00000027157 Potefam1 ENSMUST00000240550 ENSMUSP00000159483 TRANSLATION protein_coding - - - 2321.0 0.0 5.55 0.0 197.4 0.0 -4,-6 0.6206 1 8.0 ALTERNATIVE:2 ENSMUSG00000027316 Gfra4 ENSMUST00000110239 ENSMUSP00000105868 TRANSLATION protein_coding - CCDS59637.1 1 269.0 0.0 2.74 0.0 126.9 0.0 -4,-7 0.2741 - 8.0 ALTERNATIVE:2 ENSMUSG00000027316 Gfra4 ENSMUST00000110235 ENSMUSP00000105864 TRANSLATION protein_coding - - 1 190.0 0.0 0.64 0.0 45.1 0.0 3,-2 0.0032 - 2.738 MINOR ENSMUSG00000027316 Gfra4 ENSMUST00000156509 - NO_TRANSLATION retained_intron ENSMUSG00000027316 Gfra4 ENSMUST00000136569 - NO_TRANSLATION retained_intron ENSMUSG00000027316 Gfra4 ENSMUST00000028787 ENSMUSP00000028787 TRANSLATION protein_coding - CCDS16752.1 1 302.0 0.0 2.74 0.0 126.9 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000027316 Gfra4 ENSMUST00000110234 ENSMUSP00000105863 TRANSLATION protein_coding - - 1 199.0 0.0 0.64 0.0 45.1 0.0 -4,-7 0.0 - 2.738 MINOR ENSMUSG00000027316 Gfra4 ENSMUST00000066958 ENSMUSP00000068357 TRANSLATION protein_coding - CCDS59638.1 1 260.0 0.0 2.74 0.0 126.9 0.0 3,-2 0.4408 - 8.0 ALTERNATIVE:2 ENSMUSG00000027316 Gfra4 ENSMUST00000110240 ENSMUSP00000105869 TRANSLATION protein_coding - CCDS50715.1 1 293.0 0.0 2.74 0.0 126.9 0.0 3,-2 0.5464 - 8.0 ALTERNATIVE:2 ENSMUSG00000027313 Chac1 ENSMUST00000028780 ENSMUSP00000028780 TRANSLATION protein_coding - CCDS16601.1 1 223.0 0.0 2.5 8.4 229.7 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039263 Npepl1 ENSMUST00000044415 ENSMUSP00000042808 TRANSLATION protein_coding - CCDS17148.1 1 524.0 11.0 12.25 30.3 335.1 0.0 -4,-6 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000039263 Npepl1 ENSMUST00000125502 ENSMUSP00000133202 TRANSLATION nonsense_mediated_decay start - 3 210.0 2.0 4.816 0.0 82.2 0.0 -4,0 0.0004 6 -2.0 MINOR ENSMUSG00000039263 Npepl1 ENSMUST00000153957 - NO_TRANSLATION retained_intron ENSMUSG00000039263 Npepl1 ENSMUST00000136449 - NO_TRANSLATION retained_intron ENSMUSG00000026829 Gbgt1 ENSMUST00000127958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026829 Gbgt1 ENSMUST00000163121 ENSMUSP00000127071 TRANSLATION protein_coding - CCDS15839.1 5 347.0 13.0 2.5 2.7 504.2 1.0 -1,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000026829 Gbgt1 ENSMUST00000028172 ENSMUSP00000028172 TRANSLATION protein_coding - CCDS15839.1 1 347.0 13.0 2.5 2.7 504.2 1.0 -1,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000025817 Nudt5 ENSMUST00000194933 ENSMUSP00000141265 TRANSLATION protein_coding stop - 3 88.0 2.0 2.45 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025817 Nudt5 ENSMUST00000138549 - NO_TRANSLATION retained_intron ENSMUSG00000025817 Nudt5 ENSMUST00000026927 ENSMUSP00000026927 TRANSLATION protein_coding - CCDS15667.1 3 218.0 7.0 6.28 21.7 59.5 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000025817 Nudt5 ENSMUST00000128604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025817 Nudt5 ENSMUST00000127116 ENSMUSP00000117670 TRANSLATION protein_coding stop - 5 161.0 7.0 4.78 0.0 55.3 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000027282 Mtch2 ENSMUST00000057216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027282 Mtch2 ENSMUST00000136872 ENSMUSP00000121851 TRANSLATION protein_coding - CCDS16416.1 1 303.0 0.0 3.412 28.8 38.0 0.0 -4,-7 1.0 10 15.736 PRINCIPAL:1 ENSMUSG00000027282 Mtch2 ENSMUST00000148936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027282 Mtch2 ENSMUST00000144696 - NO_TRANSLATION retained_intron ENSMUSG00000027282 Mtch2 ENSMUST00000111467 ENSMUSP00000107092 TRANSLATION protein_coding - CCDS84548.1 5 294.0 0.0 3.148 15.7 38.0 0.0 -4,-7 0.8176 10 13.324 MINOR ENSMUSG00000027282 Mtch2 ENSMUST00000111468 ENSMUSP00000107093 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000027282 Mtch2 ENSMUST00000135026 - NO_TRANSLATION retained_intron ENSMUSG00000027282 Mtch2 ENSMUST00000146392 - NO_TRANSLATION retained_intron ENSMUSG00000027282 Mtch2 ENSMUST00000150232 ENSMUSP00000118566 TRANSLATION protein_coding - CCDS84547.1 1 312.0 0.0 3.544 7.8 38.0 0.0 -4,-7 0.4947 9 12.98 MINOR ENSMUSG00000027282 Mtch2 ENSMUST00000142350 - NO_TRANSLATION retained_intron ENSMUSG00000027282 Mtch2 ENSMUST00000143773 - NO_TRANSLATION retained_intron ENSMUSG00000050592 Fam78a ENSMUST00000130178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050592 Fam78a ENSMUST00000139629 ENSMUSP00000115010 TRANSLATION nonsense_mediated_decay - CCDS15905.1 1 283.0 0.0 2.0 10.6 0.0 0.0 -4,-7 1.0 3 -2.0 MINOR ENSMUSG00000050592 Fam78a ENSMUST00000056406 ENSMUSP00000052826 TRANSLATION protein_coding - CCDS15905.1 1 283.0 0.0 2.0 10.6 0.0 0.0 -4,-7 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000050592 Fam78a ENSMUST00000143795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075203 Or5al6 ENSMUST00000099909 ENSMUSP00000097493 TRANSLATION protein_coding - CCDS16239.1 - 313.0 0.0 1.0 7.9 159.7 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075023 Accsl ENSMUST00000129248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075023 Accsl ENSMUST00000151579 ENSMUSP00000159568 TRANSLATION nonsense_mediated_decay start - 3 156.0 4.0 4.16 0.0 59.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000075023 Accsl ENSMUST00000141561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075023 Accsl ENSMUST00000133562 ENSMUSP00000120924 TRANSLATION protein_coding stop - 2 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000075023 Accsl ENSMUST00000143033 ENSMUSP00000118053 TRANSLATION protein_coding stop - 2 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000075023 Accsl ENSMUST00000099690 ENSMUSP00000097281 TRANSLATION protein_coding - CCDS38183.1 1 580.0 14.0 12.34 0.0 176.6 0.0 -4,-5 0.9823 - 14.0 PRINCIPAL:2 ENSMUSG00000075023 Accsl ENSMUST00000128995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075023 Accsl ENSMUST00000132722 ENSMUSP00000121623 TRANSLATION protein_coding start - 2 83.0 0.0 2.25 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000075023 Accsl ENSMUST00000249087 ENSMUSP00000159567 TRANSLATION protein_coding - - - 528.0 14.0 12.34 0.0 176.6 0.0 -4,-6 0.0461 - 14.0 ALTERNATIVE:2 ENSMUSG00000038696 Mapkap1 ENSMUST00000113123 ENSMUSP00000108748 TRANSLATION protein_coding - CCDS71035.1 5 330.0 0.0 3.81 11.6 195.2 0.0 -4,-7 0.4426 5 4.618 MINOR ENSMUSG00000038696 Mapkap1 ENSMUST00000149383 ENSMUSP00000141407 TRANSLATION protein_coding stop - 5 171.0 0.0 1.5 0.0 106.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038696 Mapkap1 ENSMUST00000138933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038696 Mapkap1 ENSMUST00000137021 ENSMUSP00000142280 TRANSLATION nonsense_mediated_decay start - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038696 Mapkap1 ENSMUST00000113124 ENSMUSP00000108749 TRANSLATION protein_coding - - 5 486.0 0.0 5.469 16.5 336.5 0.0 -4,-5 0.7729 8 14.832 MINOR ENSMUSG00000038696 Mapkap1 ENSMUST00000124443 ENSMUSP00000123301 TRANSLATION protein_coding stop - 1 306.0 0.0 3.81 0.0 195.2 0.0 -4,-7 0.0009 5 -2.0 MINOR ENSMUSG00000038696 Mapkap1 ENSMUST00000147337 ENSMUSP00000116494 TRANSLATION protein_coding - CCDS15948.1 1 522.0 0.0 5.469 22.9 336.5 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000038696 Mapkap1 ENSMUST00000113126 ENSMUSP00000108751 TRANSLATION protein_coding - CCDS15948.1 1 522.0 0.0 5.469 22.9 336.5 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000038696 Mapkap1 ENSMUST00000141253 ENSMUSP00000141308 TRANSLATION protein_coding stop - 3 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038696 Mapkap1 ENSMUST00000156967 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038696 Mapkap1 ENSMUST00000129633 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075062 Or4b12 ENSMUST00000217396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075062 Or4b12 ENSMUST00000099751 ENSMUSP00000097340 TRANSLATION protein_coding - CCDS16411.1 - 305.0 0.0 1.0 11.9 170.1 3.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075062 Or4b12 ENSMUST00000216383 ENSMUSP00000149028 TRANSLATION protein_coding - CCDS16411.1 3 305.0 0.0 1.0 11.9 170.1 3.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046804 Phgr1 ENSMUST00000130293 ENSMUSP00000135093 TRANSLATION protein_coding - CCDS57182.1 5 112.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000016257 Prelid3b ENSMUST00000147944 - NO_TRANSLATION retained_intron ENSMUSG00000016257 Prelid3b ENSMUST00000016401 ENSMUSP00000016401 TRANSLATION protein_coding - CCDS17155.1 1 195.0 0.0 5.79 18.8 192.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000016257 Prelid3b ENSMUST00000120822 ENSMUSP00000113522 TRANSLATION protein_coding - - 3 105.0 0.0 2.88 0.0 86.9 0.0 -4,-5 0.0 - 0.18 MINOR ENSMUSG00000016257 Prelid3b ENSMUST00000141100 ENSMUSP00000115566 TRANSLATION protein_coding stop - 3 31.0 0.0 1.0 0.0 37.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000016257 Prelid3b ENSMUST00000117442 ENSMUSP00000112686 TRANSLATION protein_coding - - 3 105.0 0.0 2.88 0.0 86.9 0.0 -4,-5 0.0 - 0.18 MINOR ENSMUSG00000038860 Garnl3 ENSMUST00000148043 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038860 Garnl3 ENSMUST00000124000 ENSMUSP00000123601 TRANSLATION protein_coding stop - 5 150.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000038860 Garnl3 ENSMUST00000127509 ENSMUSP00000141523 TRANSLATION nonsense_mediated_decay - - 3 48.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038860 Garnl3 ENSMUST00000137381 ENSMUSP00000122576 TRANSLATION protein_coding - - 1 1038.0 0.0 5.97 7.4 450.5 0.0 -4,-6 0.6915 17 10.313 ALTERNATIVE:1 ENSMUSG00000038860 Garnl3 ENSMUST00000153717 - NO_TRANSLATION retained_intron ENSMUSG00000038860 Garnl3 ENSMUST00000102810 ENSMUSP00000099874 TRANSLATION protein_coding - CCDS15938.1 1 993.0 0.0 5.97 9.3 450.5 0.0 -4,-5 1.0 17 11.0 PRINCIPAL:2 ENSMUSG00000038860 Garnl3 ENSMUST00000139778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038860 Garnl3 ENSMUST00000049618 ENSMUSP00000057582 TRANSLATION protein_coding - - 1 997.0 0.0 5.97 0.3 450.5 0.0 -4,-6 0.3125 17 8.0 MINOR ENSMUSG00000038860 Garnl3 ENSMUST00000135296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038860 Garnl3 ENSMUST00000193171 ENSMUSP00000142077 TRANSLATION nonsense_mediated_decay start - 3 180.0 0.0 3.85 0.0 210.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038860 Garnl3 ENSMUST00000133135 ENSMUSP00000119973 TRANSLATION protein_coding stop - 3 125.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000038860 Garnl3 ENSMUST00000150242 - NO_TRANSLATION retained_intron ENSMUSG00000027518 1700021F07Rik ENSMUST00000029023 ENSMUSP00000029023 TRANSLATION protein_coding - CCDS50814.1 1 136.0 0.0 1.2 10.2 161.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075520 Malrd1 ENSMUST00000146205 ENSMUSP00000116869 TRANSLATION protein_coding - CCDS79736.1 1 2123.0 34.0 2.17 0.0 1014.4 0.0 1,-2 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000042133 Ppig ENSMUST00000146234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042133 Ppig ENSMUST00000124810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042133 Ppig ENSMUST00000153772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042133 Ppig ENSMUST00000142839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042133 Ppig ENSMUST00000040915 ENSMUSP00000045945 TRANSLATION protein_coding - CCDS38137.1 1 752.0 8.0 5.28 4.8 162.8 0.0 -4,-7 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000042133 Ppig ENSMUST00000134424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042133 Ppig ENSMUST00000143954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042133 Ppig ENSMUST00000125105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042133 Ppig ENSMUST00000134500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042133 Ppig ENSMUST00000144652 ENSMUSP00000114570 TRANSLATION protein_coding stop - 5 127.0 6.0 3.75 0.0 104.7 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000042133 Ppig ENSMUST00000090858 ENSMUSP00000088370 TRANSLATION protein_coding - CCDS38137.1 1 752.0 8.0 5.28 4.8 162.8 0.0 -4,-7 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000042133 Ppig ENSMUST00000128506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000113163 Or1j8 ENSMUST00000223545 ENSMUSP00000152087 TRANSLATION protein_coding_LoF start - - 312.0 0.0 1.0 5.7 171.9 0.0 -4,-6 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000064084 Or4c105 ENSMUST00000214703 ENSMUSP00000151210 TRANSLATION protein_coding - CCDS16350.1 5 309.0 0.0 1.0 12.5 158.6 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000064084 Or4c105 ENSMUST00000217059 ENSMUSP00000150743 TRANSLATION protein_coding - CCDS16350.1 3 309.0 0.0 1.0 12.5 158.6 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000064084 Or4c105 ENSMUST00000072057 ENSMUSP00000071935 TRANSLATION protein_coding - CCDS16350.1 - 309.0 0.0 1.0 12.5 158.6 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058835 Abi1 ENSMUST00000135308 - NO_TRANSLATION retained_intron ENSMUSG00000058835 Abi1 ENSMUST00000156344 - NO_TRANSLATION retained_intron ENSMUSG00000058835 Abi1 ENSMUST00000154162 - NO_TRANSLATION retained_intron ENSMUSG00000058835 Abi1 ENSMUST00000126112 ENSMUSP00000117335 TRANSLATION protein_coding - CCDS38059.1 1 476.0 0.0 4.2 21.1 179.0 0.0 -4,-5 0.9195 9 10.99 ALTERNATIVE:1 ENSMUSG00000058835 Abi1 ENSMUST00000078977 ENSMUSP00000077997 TRANSLATION protein_coding - CCDS84481.1 5 452.0 0.0 4.2 16.0 181.9 0.0 -4,-5 0.9342 9 10.48 MINOR ENSMUSG00000058835 Abi1 ENSMUST00000148294 - NO_TRANSLATION retained_intron ENSMUSG00000058835 Abi1 ENSMUST00000139038 ENSMUSP00000116093 TRANSLATION protein_coding - - 5 422.0 0.0 4.2 8.0 181.9 0.0 -4,-5 0.3633 9 9.156 MINOR ENSMUSG00000058835 Abi1 ENSMUST00000091394 ENSMUSP00000088957 TRANSLATION protein_coding - CCDS84480.1 5 480.0 0.0 4.2 18.9 181.9 0.0 -4,-5 0.9459 9 10.96 ALTERNATIVE:1 ENSMUSG00000058835 Abi1 ENSMUST00000114544 ENSMUSP00000110191 TRANSLATION protein_coding - CCDS38058.1 1 388.0 0.0 4.2 22.2 179.0 0.0 -4,-5 1.0 9 11.17 PRINCIPAL:4 ENSMUSG00000058835 Abi1 ENSMUST00000093171 ENSMUSP00000090860 TRANSLATION protein_coding - CCDS84479.1 5 451.0 0.0 4.2 16.0 181.9 0.0 -4,-5 0.9389 9 10.48 MINOR ENSMUSG00000058835 Abi1 ENSMUST00000153931 ENSMUSP00000120769 TRANSLATION protein_coding - - 5 393.0 0.0 4.2 25.2 181.9 0.0 -4,-5 0.9012 9 12.0 ALTERNATIVE:1 ENSMUSG00000058835 Abi1 ENSMUST00000123948 ENSMUSP00000118491 TRANSLATION protein_coding - CCDS38061.1 1 481.0 0.0 4.2 18.9 181.9 0.0 -4,-5 0.9553 9 10.96 ALTERNATIVE:1 ENSMUSG00000058835 Abi1 ENSMUST00000178908 ENSMUSP00000136846 TRANSLATION protein_coding - - 5 481.0 0.0 4.2 21.1 182.3 0.0 -4,-5 0.832 9 11.324 ALTERNATIVE:1 ENSMUSG00000058835 Abi1 ENSMUST00000140164 ENSMUSP00000120462 TRANSLATION protein_coding - CCDS50513.1 1 475.0 0.0 4.2 21.1 179.0 0.0 -4,-5 0.9195 9 10.99 ALTERNATIVE:1 ENSMUSG00000058835 Abi1 ENSMUST00000149719 ENSMUSP00000120621 TRANSLATION protein_coding - CCDS38060.1 1 446.0 0.0 4.2 16.0 179.0 0.0 -4,-5 0.8785 9 10.146 MINOR ENSMUSG00000027249 F2 ENSMUST00000111335 ENSMUSP00000106967 TRANSLATION protein_coding - - 5 617.0 2.0 10.88 11.0 539.3 0.0 2,-1 0.8407 25 13.0 ALTERNATIVE:1 ENSMUSG00000027249 F2 ENSMUST00000153182 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027249 F2 ENSMUST00000028681 ENSMUSP00000028681 TRANSLATION protein_coding - CCDS16434.1 1 618.0 2.0 10.88 11.0 539.3 0.0 2,-1 1.0 27 13.0 PRINCIPAL:3 ENSMUSG00000074569 Gcnt7 ENSMUST00000099060 ENSMUSP00000096659 TRANSLATION protein_coding - CCDS17133.1 1 433.0 0.0 2.2 7.3 128.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000074569 Gcnt7 ENSMUST00000161334 ENSMUSP00000125368 TRANSLATION protein_coding start - 1 348.0 0.0 1.4 0.0 122.2 0.0 -4,-5 0.0036 - -2.0 MINOR ENSMUSG00000037025 Foxa2 ENSMUST00000109964 ENSMUSP00000105590 TRANSLATION protein_coding - CCDS71157.1 1 465.0 0.0 0.8 6.5 301.8 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:4 ENSMUSG00000037025 Foxa2 ENSMUST00000146242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037025 Foxa2 ENSMUST00000047315 ENSMUSP00000045918 TRANSLATION protein_coding - CCDS16836.1 1 459.0 0.0 0.8 4.9 301.8 0.0 -4,-5 0.8892 3 9.418 ALTERNATIVE:1 ENSMUSG00000037025 Foxa2 ENSMUST00000172928 ENSMUSP00000134081 TRANSLATION protein_coding stop - 5 275.0 0.0 0.4 0.0 149.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000110912 Or8k33 ENSMUST00000213185 ENSMUSP00000150502 TRANSLATION protein_coding - CCDS16261.1 2 313.0 0.0 1.0 11.0 161.5 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027366 Sppl2a ENSMUST00000125592 - NO_TRANSLATION retained_intron ENSMUSG00000027366 Sppl2a ENSMUST00000028844 ENSMUSP00000028844 TRANSLATION protein_coding - CCDS16690.1 1 523.0 0.0 1.1225 3.6 299.7 8.0 3,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000027366 Sppl2a ENSMUST00000143700 ENSMUSP00000119064 TRANSLATION protein_coding start/stop - 5 253.0 0.0 0.6625 0.0 236.2 5.0 -3,-5 0.0041 1 -2.0 MINOR ENSMUSG00000078868 Gm14412 ENSMUST00000108959 ENSMUSP00000104587 TRANSLATION protein_coding - - 5 526.0 60.0 1.3 0.0 451.3 0.0 -4,-5 0.836 - 18.0 PRINCIPAL:1 ENSMUSG00000062175 Tgif2 ENSMUST00000176281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062175 Tgif2 ENSMUST00000175634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062175 Tgif2 ENSMUST00000150078 ENSMUSP00000134959 TRANSLATION nonsense_mediated_decay - - 3 68.0 0.0 1.0 0.0 32.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062175 Tgif2 ENSMUST00000081335 ENSMUSP00000096745 TRANSLATION protein_coding - CCDS16969.1 1 237.0 0.0 2.0 11.0 61.7 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000062175 Tgif2 ENSMUST00000073352 ENSMUSP00000073074 TRANSLATION protein_coding - CCDS71173.1 1 198.0 0.0 2.0 0.1 61.7 0.0 -4,-5 0.1739 1 12.0 MINOR ENSMUSG00000026854 Usp20 ENSMUST00000136588 ENSMUSP00000119197 TRANSLATION protein_coding start/stop - 5 143.0 7.0 3.91 0.0 82.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026854 Usp20 ENSMUST00000127776 - NO_TRANSLATION retained_intron ENSMUSG00000026854 Usp20 ENSMUST00000102849 ENSMUSP00000099913 TRANSLATION protein_coding - CCDS15893.1 1 916.0 16.0 14.865 8.7 344.7 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000026854 Usp20 ENSMUST00000154634 - NO_TRANSLATION retained_intron ENSMUSG00000026854 Usp20 ENSMUST00000142232 ENSMUSP00000115347 TRANSLATION protein_coding stop - 5 100.0 3.0 1.16 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000026854 Usp20 ENSMUST00000192882 - NO_TRANSLATION retained_intron ENSMUSG00000026854 Usp20 ENSMUST00000138161 ENSMUSP00000116696 TRANSLATION protein_coding stop - 3 77.0 10.0 2.57 0.0 37.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026854 Usp20 ENSMUST00000061544 ENSMUSP00000060167 TRANSLATION protein_coding - - 1 210.0 12.0 5.345 0.0 99.2 0.0 -4,-5 0.0 1 3.336 MINOR ENSMUSG00000026854 Usp20 ENSMUST00000170476 ENSMUSP00000127388 TRANSLATION protein_coding - CCDS15893.1 1 916.0 16.0 14.865 8.7 344.7 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000026854 Usp20 ENSMUST00000125601 ENSMUSP00000121699 TRANSLATION protein_coding stop - 5 66.0 8.0 2.24 0.0 27.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026854 Usp20 ENSMUST00000154351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026854 Usp20 ENSMUST00000128295 ENSMUSP00000115613 TRANSLATION protein_coding stop - 2 77.0 10.0 2.57 0.0 37.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000101078 Or5d38 ENSMUST00000099833 ENSMUSP00000097421 TRANSLATION protein_coding - CCDS16326.1 - 316.0 0.0 1.0 7.8 171.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000101078 Or5d38 ENSMUST00000217575 ENSMUSP00000149099 TRANSLATION protein_coding - CCDS16326.1 5 316.0 0.0 1.0 7.8 171.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075120 Or4a66 ENSMUST00000216977 ENSMUSP00000149902 TRANSLATION protein_coding - CCDS16344.2 5 314.0 0.0 1.0 1.1 158.5 6.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075120 Or4a66 ENSMUST00000216928 ENSMUSP00000149100 TRANSLATION protein_coding - CCDS16344.2 5 314.0 0.0 1.0 1.1 158.5 6.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075120 Or4a66 ENSMUST00000104892 ENSMUSP00000100488 TRANSLATION protein_coding - CCDS16344.2 - 314.0 0.0 1.0 1.1 158.5 6.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026943 Lcn12 ENSMUST00000114245 ENSMUSP00000109883 TRANSLATION protein_coding - - 1 157.0 0.0 4.08 0.3 76.7 0.0 -4,-6 0.0011 1 10.8 MINOR ENSMUSG00000026943 Lcn12 ENSMUST00000028312 ENSMUSP00000028312 TRANSLATION protein_coding - CCDS15776.1 1 193.0 0.0 4.68 0.3 76.7 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000089917 Uckl1 ENSMUST00000136875 ENSMUSP00000114821 TRANSLATION protein_coding stop - 5 235.0 17.0 3.34 0.0 155.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000089917 Uckl1 ENSMUST00000154613 ENSMUSP00000120302 TRANSLATION nonsense_mediated_decay start - 3 55.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000089917 Uckl1 ENSMUST00000149332 - NO_TRANSLATION retained_intron ENSMUSG00000089917 Uckl1 ENSMUST00000134340 ENSMUSP00000122098 TRANSLATION protein_coding start - 5 198.0 16.0 4.95 0.0 200.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000089917 Uckl1 ENSMUST00000129469 ENSMUSP00000121607 TRANSLATION nonsense_mediated_decay - - 5 339.0 18.0 4.74 0.0 200.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000089917 Uckl1 ENSMUST00000156308 - NO_TRANSLATION retained_intron ENSMUSG00000089917 Uckl1 ENSMUST00000156998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089917 Uckl1 ENSMUST00000144856 ENSMUSP00000114982 TRANSLATION protein_coding start/stop - 3 253.0 18.0 3.84 0.0 179.9 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000089917 Uckl1 ENSMUST00000124315 - NO_TRANSLATION retained_intron ENSMUSG00000089917 Uckl1 ENSMUST00000057816 ENSMUSP00000050398 TRANSLATION protein_coding - CCDS17216.1 1 548.0 34.0 10.888 0.3 444.1 0.0 -4,-7 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000089917 Uckl1 ENSMUST00000131949 ENSMUSP00000118872 TRANSLATION protein_coding stop - 3 16.0 0.0 0.24 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000089917 Uckl1 ENSMUST00000138408 - NO_TRANSLATION retained_intron ENSMUSG00000089917 Uckl1 ENSMUST00000155182 - NO_TRANSLATION retained_intron ENSMUSG00000089917 Uckl1 ENSMUST00000142491 - NO_TRANSLATION retained_intron ENSMUSG00000089917 Uckl1 ENSMUST00000146823 - NO_TRANSLATION retained_intron ENSMUSG00000089917 Uckl1 ENSMUST00000130893 - NO_TRANSLATION retained_intron ENSMUSG00000089917 Uckl1 ENSMUST00000136997 - NO_TRANSLATION retained_intron ENSMUSG00000089917 Uckl1 ENSMUST00000142296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026755 Arpc5l ENSMUST00000112862 ENSMUSP00000108483 TRANSLATION protein_coding - CCDS38120.1 1 153.0 0.0 3.63 28.9 187.9 0.0 -4,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000026755 Arpc5l ENSMUST00000141467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026755 Arpc5l ENSMUST00000135049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026755 Arpc5l ENSMUST00000090993 ENSMUSP00000088516 TRANSLATION nonsense_mediated_decay - - 2 65.0 0.0 1.1 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026755 Arpc5l ENSMUST00000204825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027330 Cdc25b ENSMUST00000079857 ENSMUSP00000078784 TRANSLATION protein_coding - CCDS50717.1 1 550.0 0.0 5.35 0.1 321.0 0.0 -4,-2 0.182 - 8.58 MINOR ENSMUSG00000027330 Cdc25b ENSMUST00000125423 - NO_TRANSLATION retained_intron ENSMUSG00000027330 Cdc25b ENSMUST00000145556 - NO_TRANSLATION retained_intron ENSMUSG00000027330 Cdc25b ENSMUST00000141732 - NO_TRANSLATION retained_intron ENSMUSG00000027330 Cdc25b ENSMUST00000138669 - NO_TRANSLATION retained_intron ENSMUSG00000027330 Cdc25b ENSMUST00000028804 ENSMUSP00000028804 TRANSLATION protein_coding - CCDS16758.1 1 576.0 0.0 5.35 2.3 378.0 0.0 -4,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000027330 Cdc25b ENSMUST00000132727 - NO_TRANSLATION retained_intron ENSMUSG00000079051 Vinac1 ENSMUST00000145798 ENSMUSP00000123404 TRANSLATION protein_coding - - 5 1413.0 0.0 1.94 0.0 196.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044308 Ubr3 ENSMUST00000136543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044308 Ubr3 ENSMUST00000142563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044308 Ubr3 ENSMUST00000055758 ENSMUSP00000060159 TRANSLATION protein_coding - CCDS16104.2 1 1889.0 15.0 0.0 2.0 68.1 0.0 -4,-6 1.0 26 13.0 PRINCIPAL:1 ENSMUSG00000044308 Ubr3 ENSMUST00000125608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044308 Ubr3 ENSMUST00000152610 ENSMUSP00000122027 TRANSLATION protein_coding start/stop - 3 242.0 4.0 0.0 0.0 0.0 0.0 -4,-7 0.0011 7 -2.0 MINOR ENSMUSG00000044308 Ubr3 ENSMUST00000150301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044308 Ubr3 ENSMUST00000126165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044308 Ubr3 ENSMUST00000131553 ENSMUSP00000121401 TRANSLATION protein_coding start - 2 517.0 11.0 0.0 0.0 68.1 0.0 -4,-5 0.0546 6 -2.0 MINOR ENSMUSG00000044308 Ubr3 ENSMUST00000123890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015092 Edf1 ENSMUST00000142288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015092 Edf1 ENSMUST00000144395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015092 Edf1 ENSMUST00000153008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015092 Edf1 ENSMUST00000015236 ENSMUSP00000015236 TRANSLATION protein_coding - CCDS15780.1 1 148.0 0.0 3.0 28.6 136.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000015092 Edf1 ENSMUST00000134689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044916 Frey1 ENSMUST00000111280 ENSMUSP00000106911 TRANSLATION protein_coding - - 1 76.0 0.0 0.0 0.0 34.3 0.0 1,-3 0.0004 - 0.0 MINOR ENSMUSG00000044916 Frey1 ENSMUST00000191292 ENSMUSP00000140421 TRANSLATION nonsense_mediated_decay - - 1 35.0 0.0 0.0 0.0 35.8 0.0 2,-2 0.0033 - -2.0 MINOR ENSMUSG00000044916 Frey1 ENSMUST00000054316 ENSMUSP00000051464 TRANSLATION protein_coding - CCDS16445.1 1 99.0 0.0 0.0 8.1 155.6 0.0 1,-3 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000044916 Frey1 ENSMUST00000189714 - NO_TRANSLATION retained_intron ENSMUSG00000036949 Slc39a12 ENSMUST00000133258 ENSMUSP00000122795 TRANSLATION protein_coding stop - 3 73.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0012 1 -2.0 MINOR ENSMUSG00000036949 Slc39a12 ENSMUST00000114731 ENSMUSP00000110379 TRANSLATION protein_coding - - 5 653.0 0.0 3.0 4.3 209.4 5.0 3,-2 0.506 10 7.27 ALTERNATIVE:2 ENSMUSG00000036949 Slc39a12 ENSMUST00000082290 ENSMUSP00000080911 TRANSLATION protein_coding - CCDS15701.1 1 689.0 0.0 3.0 6.2 213.5 5.0 3,-2 1.0 10 8.0 PRINCIPAL:2 ENSMUSG00000118623 Gm52968 ENSMUST00000145993 ENSMUSP00000159254 TRANSLATION nonsense_mediated_decay,RT start - 2 132.0 0.0 2.675 0.0 0.0 0.0 -4,-5 0.659 - -2.0 PRINCIPAL:1 ENSMUSG00000118623 Gm52968 ENSMUST00000124129 ENSMUSP00000159283 TRANSLATION nonsense_mediated_decay,RT start - 2 132.0 0.0 2.675 0.0 0.0 0.0 -4,-5 0.659 - -2.0 PRINCIPAL:1 ENSMUSG00000037885 Stk35 ENSMUST00000165413 ENSMUSP00000126541 TRANSLATION protein_coding - CCDS16732.2 1 539.0 17.0 0.332 8.2 169.7 0.0 -4,-7 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000037885 Stk35 ENSMUST00000166282 ENSMUSP00000132862 TRANSLATION protein_coding - CCDS16731.2 1 327.0 9.0 0.2 0.0 34.9 0.0 -4,-7 0.0149 1 4.278 MINOR ENSMUSG00000074965 Or4k35 ENSMUST00000099619 ENSMUSP00000097214 TRANSLATION protein_coding - CCDS16517.1 - 303.0 0.0 1.0 8.0 168.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074965 Or4k35 ENSMUST00000214760 ENSMUSP00000150703 TRANSLATION protein_coding - CCDS16517.1 5 303.0 0.0 1.0 8.0 168.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000089739 Gm20431 ENSMUST00000125544 ENSMUSP00000118416 TRANSLATION protein_coding,RT - - 5 371.0 0.0 7.6 1.0 270.7 0.0 -4,-5 0.7757 - -2.0 PRINCIPAL:1 ENSMUSG00000074743 Thbd ENSMUST00000099270 ENSMUSP00000096877 TRANSLATION protein_coding - CCDS16838.1 - 577.0 13.0 0.0 4.1 155.6 0.0 1,-3 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000039155 Cdh26 ENSMUST00000108912 ENSMUSP00000104540 TRANSLATION protein_coding - CCDS71211.1 1 744.0 42.0 9.8 0.0 142.4 1.0 2,-2 0.5437 - 14.0 ALTERNATIVE:2 ENSMUSG00000039155 Cdh26 ENSMUST00000176869 - NO_TRANSLATION retained_intron ENSMUSG00000039155 Cdh26 ENSMUST00000042092 ENSMUSP00000048829 TRANSLATION protein_coding - CCDS17162.1 1 763.0 42.0 9.8 0.1 142.4 1.0 2,-2 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000075100 Or4c118 ENSMUST00000217342 ENSMUSP00000150550 TRANSLATION protein_coding - CCDS16368.1 2 311.0 0.0 1.0 8.3 161.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040506 Ambra1 ENSMUST00000045699 ENSMUSP00000048898 TRANSLATION protein_coding - - 5 1180.0 0.0 2.72 10.3 0.0 0.0 -4,-7 0.7958 16 9.0 ALTERNATIVE:1 ENSMUSG00000040506 Ambra1 ENSMUST00000156496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040506 Ambra1 ENSMUST00000133490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040506 Ambra1 ENSMUST00000045705 ENSMUSP00000049258 TRANSLATION protein_coding - CCDS38179.1 1 1300.0 0.0 2.72 9.1 0.0 0.0 -4,-7 0.8824 19 8.613 PRINCIPAL:3 ENSMUSG00000040506 Ambra1 ENSMUST00000111317 ENSMUSP00000106949 TRANSLATION protein_coding - - 5 1180.0 0.0 2.72 10.3 0.0 0.0 -4,-7 0.7958 16 9.0 ALTERNATIVE:1 ENSMUSG00000040506 Ambra1 ENSMUST00000099712 ENSMUSP00000097299 TRANSLATION protein_coding - CCDS38180.1 1 1209.0 0.0 2.72 10.3 0.0 0.0 -4,-7 1.0 18 9.0 ALTERNATIVE:1 ENSMUSG00000040506 Ambra1 ENSMUST00000124132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040506 Ambra1 ENSMUST00000111316 ENSMUSP00000106948 TRANSLATION protein_coding - - 5 1240.0 0.0 2.72 3.3 0.0 0.0 -4,-7 0.3862 19 6.741 MINOR ENSMUSG00000040506 Ambra1 ENSMUST00000142224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046975 Or5ap2 ENSMUST00000055840 ENSMUSP00000058242 TRANSLATION protein_coding - CCDS16224.1 - 317.0 0.0 1.0 9.7 182.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046975 Or5ap2 ENSMUST00000215347 ENSMUSP00000150285 TRANSLATION protein_coding - CCDS16224.1 3 317.0 0.0 1.0 9.7 182.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035403 Crb2 ENSMUST00000137693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035403 Crb2 ENSMUST00000147600 ENSMUSP00000144709 TRANSLATION nonsense_mediated_decay start - 3 197.0 4.0 0.8 0.0 33.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000035403 Crb2 ENSMUST00000050372 ENSMUSP00000058007 TRANSLATION protein_coding - CCDS50580.1 5 1282.0 21.0 5.0 0.1 312.3 0.0 3,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000027457 Snph ENSMUST00000148755 ENSMUSP00000138249 TRANSLATION protein_coding stop - 3 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000027457 Snph ENSMUST00000094456 ENSMUSP00000092026 TRANSLATION protein_coding - CCDS71162.1 1 495.0 0.0 1.5 5.7 474.2 1.0 -4,0 1.0 15 10.0 ALTERNATIVE:1 ENSMUSG00000027457 Snph ENSMUST00000143367 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027457 Snph ENSMUST00000141692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027457 Snph ENSMUST00000146172 ENSMUSP00000138114 TRANSLATION protein_coding stop - 3 60.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000027457 Snph ENSMUST00000028951 ENSMUSP00000028951 TRANSLATION protein_coding - CCDS16871.1 1 528.0 0.0 1.5 5.0 474.2 1.0 -3,1 0.813 16 9.702 PRINCIPAL:3 ENSMUSG00000027457 Snph ENSMUST00000109875 ENSMUSP00000105501 TRANSLATION protein_coding - CCDS16871.1 1 528.0 0.0 1.5 5.0 474.2 1.0 -3,1 0.813 16 9.702 PRINCIPAL:3 ENSMUSG00000027457 Snph ENSMUST00000145434 - NO_TRANSLATION retained_intron ENSMUSG00000027457 Snph ENSMUST00000133378 - NO_TRANSLATION retained_intron ENSMUSG00000027457 Snph ENSMUST00000109877 ENSMUSP00000105503 TRANSLATION protein_coding - CCDS71161.1 1 459.0 0.0 1.5 0.3 423.3 1.0 -4,-2 0.1777 13 6.0 MINOR ENSMUSG00000027457 Snph ENSMUST00000137936 ENSMUSP00000123255 TRANSLATION protein_coding stop - 3 87.0 0.0 0.0 0.0 117.1 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000045794 Lkaaear1 ENSMUST00000132409 ENSMUSP00000116083 TRANSLATION protein_coding start - 5 115.0 0.0 2.3 0.0 104.2 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000045794 Lkaaear1 ENSMUST00000052416 ENSMUSP00000061134 TRANSLATION protein_coding - CCDS17221.1 1 198.0 0.0 2.63 0.1 175.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075099 Or4c119 ENSMUST00000216976 ENSMUSP00000148938 TRANSLATION protein_coding - - 3 311.0 0.0 1.0 8.3 162.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075099 Or4c119 ENSMUST00000216913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075099 Or4c119 ENSMUST00000099793 ENSMUSP00000097381 TRANSLATION protein_coding - - 3 311.0 0.0 1.0 8.3 162.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075099 Or4c119 ENSMUST00000214069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075099 Or4c119 ENSMUST00000216833 ENSMUSP00000149046 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 8.3 162.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000017004 Svs5 ENSMUST00000149370 ENSMUSP00000119963 TRANSLATION protein_coding start - 2 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0178 3 -2.0 MINOR ENSMUSG00000017004 Svs5 ENSMUST00000017148 ENSMUSP00000017148 TRANSLATION protein_coding - CCDS17032.1 1 122.0 0.0 0.0 0.1 0.0 0.0 4,-1 0.9443 11 0.0 PRINCIPAL:1 ENSMUSG00000075167 Or5t16 ENSMUST00000214411 ENSMUSP00000151171 TRANSLATION protein_coding - CCDS16274.1 3 310.0 0.0 1.0 0.4 173.7 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075167 Or5t16 ENSMUST00000099870 ENSMUSP00000097455 TRANSLATION protein_coding - CCDS16274.1 - 310.0 0.0 1.0 0.4 173.7 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037034 Pax1 ENSMUST00000156584 - NO_TRANSLATION retained_intron ENSMUSG00000037034 Pax1 ENSMUST00000126068 ENSMUSP00000119667 TRANSLATION protein_coding stop - 5 384.0 0.0 1.0 0.0 241.1 0.0 -2,-5 0.0692 - -2.0 MINOR ENSMUSG00000037034 Pax1 ENSMUST00000109968 ENSMUSP00000105594 TRANSLATION protein_coding - CCDS16835.2 1 446.0 0.0 1.0 5.1 241.1 0.0 0,4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000109219 Or4k49 ENSMUST00000213511 ENSMUSP00000149299 TRANSLATION protein_coding - CCDS38197.1 5 312.0 0.0 1.0 10.4 160.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109219 Or4k49 ENSMUST00000207228 ENSMUSP00000146528 TRANSLATION protein_coding - CCDS38197.1 3 312.0 0.0 1.0 10.4 160.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039834 Zfp335 ENSMUST00000139247 ENSMUSP00000138664 TRANSLATION nonsense_mediated_decay start - 3 91.0 0.0 0.0 0.0 0.0 0.0 -3,0 0.0006 - -2.0 MINOR ENSMUSG00000039834 Zfp335 ENSMUST00000183830 ENSMUSP00000139133 TRANSLATION nonsense_mediated_decay - - 1 598.0 16.0 2.098 0.0 70.5 0.0 -4,-5 0.0014 - -2.0 MINOR ENSMUSG00000039834 Zfp335 ENSMUST00000041361 ENSMUSP00000038298 TRANSLATION protein_coding - CCDS38331.1 1 1337.0 47.0 3.1455 0.4 149.7 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000094266 Or1j12 ENSMUST00000072854 ENSMUSP00000072632 TRANSLATION protein_coding - CCDS15973.1 - 312.0 0.0 1.0 8.7 188.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027189 Trim44 ENSMUST00000152929 ENSMUSP00000116958 TRANSLATION protein_coding start/stop - 2 172.0 8.0 0.834 0.0 40.0 0.0 -4,-5 0.0116 1 -2.0 MINOR ENSMUSG00000027189 Trim44 ENSMUST00000102573 ENSMUSP00000099633 TRANSLATION protein_coding - CCDS16466.1 1 345.0 15.0 1.348 2.9 40.0 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000027189 Trim44 ENSMUST00000144110 ENSMUSP00000119847 TRANSLATION protein_coding stop - 3 87.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000043102 Qrfp ENSMUST00000057407 ENSMUSP00000055746 TRANSLATION protein_coding - CCDS15902.1 1 124.0 0.0 0.0 0.0 175.9 0.0 2,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000075107 Or4c111 ENSMUST00000216000 ENSMUSP00000150674 TRANSLATION protein_coding - CCDS16361.1 5 311.0 0.0 1.0 7.2 157.3 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075107 Or4c111 ENSMUST00000218738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075107 Or4c111 ENSMUST00000217000 ENSMUSP00000149441 TRANSLATION protein_coding - CCDS16361.1 5 311.0 0.0 1.0 7.2 157.3 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075107 Or4c111 ENSMUST00000099800 ENSMUSP00000097388 TRANSLATION protein_coding - CCDS16361.1 - 311.0 0.0 1.0 7.2 157.3 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000074681 Defb23 ENSMUST00000099206 ENSMUSP00000096812 TRANSLATION protein_coding - CCDS16886.1 1 166.0 0.0 0.8 0.4 24.2 0.0 0,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000027180 Fbxo3 ENSMUST00000111135 ENSMUSP00000106765 TRANSLATION protein_coding - - 5 410.0 0.0 9.33 4.7 98.8 0.0 -4,-5 0.5334 6 7.6 MINOR ENSMUSG00000027180 Fbxo3 ENSMUST00000028603 ENSMUSP00000028603 TRANSLATION protein_coding - CCDS16484.1 1 480.0 0.0 9.93 0.4 131.5 0.0 -4,-6 0.3376 8 8.0 ALTERNATIVE:2 ENSMUSG00000027180 Fbxo3 ENSMUST00000111136 ENSMUSP00000106766 TRANSLATION protein_coding - - 1 361.0 0.0 8.33 0.0 95.2 0.0 -4,-6 0.0 6 4.002 MINOR ENSMUSG00000027180 Fbxo3 ENSMUST00000102565 ENSMUSP00000099625 TRANSLATION protein_coding - CCDS16485.1 1 415.0 0.0 9.33 4.7 131.5 0.0 -4,-6 1.0 7 8.8 PRINCIPAL:2 ENSMUSG00000027180 Fbxo3 ENSMUST00000143799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075223 Or5ak4 ENSMUST00000111598 ENSMUSP00000107225 TRANSLATION protein_coding - CCDS16203.1 3 309.0 0.0 1.0 14.5 170.7 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075223 Or5ak4 ENSMUST00000099929 ENSMUSP00000097513 TRANSLATION protein_coding - CCDS16203.1 - 309.0 0.0 1.0 14.5 170.7 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075223 Or5ak4 ENSMUST00000216347 ENSMUSP00000150619 TRANSLATION protein_coding - CCDS16203.1 5 309.0 0.0 1.0 14.5 170.7 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026875 Traf1 ENSMUST00000129131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026875 Traf1 ENSMUST00000172159 ENSMUSP00000130759 TRANSLATION protein_coding - CCDS15956.1 1 409.0 9.0 3.6 8.4 56.2 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000026875 Traf1 ENSMUST00000028234 ENSMUSP00000028234 TRANSLATION protein_coding - CCDS15956.1 5 409.0 9.0 3.6 8.4 56.2 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000026875 Traf1 ENSMUST00000141238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026875 Traf1 ENSMUST00000113064 ENSMUSP00000108687 TRANSLATION protein_coding - CCDS15956.1 1 409.0 9.0 3.6 8.4 56.2 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000026875 Traf1 ENSMUST00000201690 ENSMUSP00000144189 TRANSLATION protein_coding - - 3 71.0 6.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 1 4.002 MINOR ENSMUSG00000026875 Traf1 ENSMUST00000135870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026875 Traf1 ENSMUST00000201335 - NO_TRANSLATION retained_intron ENSMUSG00000026875 Traf1 ENSMUST00000156479 - NO_TRANSLATION retained_intron ENSMUSG00000027221 Chst1 ENSMUST00000065797 ENSMUSP00000064246 TRANSLATION protein_coding - CCDS16450.1 1 411.0 0.0 0.48 20.6 206.7 0.0 0,-4 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000075170 Or8h7 ENSMUST00000217403 ENSMUSP00000150400 TRANSLATION protein_coding - CCDS16271.1 5 315.0 0.0 1.0 8.3 172.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075170 Or8h7 ENSMUST00000111576 ENSMUSP00000107202 TRANSLATION protein_coding - CCDS16271.1 3 315.0 0.0 1.0 8.3 172.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027347 Rasgrp1 ENSMUST00000102534 ENSMUSP00000099593 TRANSLATION protein_coding - CCDS16572.1 5 795.0 16.0 12.56 9.5 259.4 0.0 -4,-7 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000027347 Rasgrp1 ENSMUST00000110898 - NO_TRANSLATION retained_intron ENSMUSG00000027347 Rasgrp1 ENSMUST00000172901 ENSMUSP00000133449 TRANSLATION protein_coding - - 5 597.0 16.0 11.03 1.0 257.9 0.0 -4,-7 0.0926 9 14.85 MINOR ENSMUSG00000027347 Rasgrp1 ENSMUST00000173252 ENSMUSP00000134592 TRANSLATION protein_coding - - 5 546.0 11.0 10.43 0.0 234.9 0.0 -4,-7 0.0141 8 8.934 MINOR ENSMUSG00000027347 Rasgrp1 ENSMUST00000173541 ENSMUSP00000134027 TRANSLATION protein_coding - - 5 760.0 16.0 12.36 2.1 257.9 0.0 -4,-7 0.1902 12 17.895 MINOR ENSMUSG00000027347 Rasgrp1 ENSMUST00000174770 ENSMUSP00000134167 TRANSLATION nonsense_mediated_decay - - 5 481.0 4.0 9.1 0.0 204.5 0.0 -4,-7 0.002 6 -2.0 MINOR ENSMUSG00000037143 Cfap61 ENSMUST00000155214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037143 Cfap61 ENSMUST00000138774 ENSMUSP00000120838 TRANSLATION protein_coding - - 1 183.0 0.0 0.0 0.0 128.5 0.0 -4,-1 0.0 - 0.0 MINOR ENSMUSG00000037143 Cfap61 ENSMUST00000167179 ENSMUSP00000129303 TRANSLATION protein_coding - - - 60.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000037143 Cfap61 ENSMUST00000152515 ENSMUSP00000116283 TRANSLATION protein_coding - - 3 147.0 0.0 0.0 0.0 143.5 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000037143 Cfap61 ENSMUST00000133433 ENSMUSP00000118411 TRANSLATION protein_coding - - 5 1230.0 18.0 0.0 0.0 310.9 0.0 -4,-7 0.9306 1 12.0 PRINCIPAL:1 ENSMUSG00000037143 Cfap61 ENSMUST00000118002 ENSMUSP00000113529 TRANSLATION protein_coding - - 1 198.0 0.0 0.0 0.0 181.6 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000037143 Cfap61 ENSMUST00000143896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037143 Cfap61 ENSMUST00000130168 ENSMUSP00000121294 TRANSLATION protein_coding stop - 1 192.0 0.0 0.0 0.0 188.9 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000037143 Cfap61 ENSMUST00000144066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037143 Cfap61 ENSMUST00000150771 - NO_TRANSLATION retained_intron ENSMUSG00000037143 Cfap61 ENSMUST00000126415 ENSMUSP00000118626 TRANSLATION protein_coding - - 1 617.0 0.0 0.0 0.0 310.9 0.0 -4,-7 0.1155 1 6.0 MINOR ENSMUSG00000037143 Cfap61 ENSMUST00000116398 ENSMUSP00000112099 TRANSLATION protein_coding - CCDS50736.1 1 267.0 0.0 0.0 0.0 261.7 0.0 -4,-7 0.0524 - 3.048 MINOR ENSMUSG00000037143 Cfap61 ENSMUST00000146891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037143 Cfap61 ENSMUST00000125223 ENSMUSP00000121560 TRANSLATION protein_coding start/stop - 5 294.0 18.0 0.0 0.0 0.0 0.0 -4,-2 0.0037 - -2.0 MINOR ENSMUSG00000084336 Or4x6 ENSMUST00000099756 ENSMUSP00000097345 TRANSLATION protein_coding - CCDS16406.1 - 309.0 0.0 1.0 12.5 169.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000084336 Or4x6 ENSMUST00000216493 ENSMUSP00000150470 TRANSLATION protein_coding - CCDS16406.1 5 309.0 0.0 1.0 12.5 169.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000084336 Or4x6 ENSMUST00000214404 ENSMUSP00000150655 TRANSLATION protein_coding - CCDS16406.1 5 309.0 0.0 1.0 12.5 169.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075073 Or4a47 ENSMUST00000111520 ENSMUSP00000107145 TRANSLATION nonsense_mediated_decay - CCDS16394.1 5 306.0 0.0 1.0 11.0 160.0 4.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000075073 Or4a47 ENSMUST00000099763 ENSMUSP00000097351 TRANSLATION protein_coding - CCDS16394.1 - 306.0 0.0 1.0 11.0 160.0 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075073 Or4a47 ENSMUST00000215613 ENSMUSP00000149123 TRANSLATION protein_coding - CCDS16394.1 3 306.0 0.0 1.0 11.0 160.0 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075073 Or4a47 ENSMUST00000213833 ENSMUSP00000150906 TRANSLATION protein_coding - CCDS16394.1 3 306.0 0.0 1.0 11.0 160.0 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027384 Ndufaf5 ENSMUST00000044825 ENSMUSP00000035325 TRANSLATION protein_coding - CCDS16804.2 1 343.0 17.0 8.05 5.8 70.0 0.0 0,2 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000027384 Ndufaf5 ENSMUST00000123078 - NO_TRANSLATION retained_intron ENSMUSG00000027384 Ndufaf5 ENSMUST00000125913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049401 Ogfr ENSMUST00000029087 ENSMUSP00000029087 TRANSLATION protein_coding - CCDS17179.1 1 633.0 0.0 4.4 0.0 360.3 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000049401 Ogfr ENSMUST00000147070 - NO_TRANSLATION retained_intron ENSMUSG00000027255 Arfgap2 ENSMUST00000127895 - NO_TRANSLATION retained_intron ENSMUSG00000027255 Arfgap2 ENSMUST00000150753 - NO_TRANSLATION retained_intron ENSMUSG00000027255 Arfgap2 ENSMUST00000028691 ENSMUSP00000028691 TRANSLATION protein_coding - CCDS50639.1 1 534.0 4.0 3.6875 7.8 110.0 0.0 -4,-6 0.8995 17 14.193 ALTERNATIVE:1 ENSMUSG00000027255 Arfgap2 ENSMUST00000146228 - NO_TRANSLATION retained_intron ENSMUSG00000027255 Arfgap2 ENSMUST00000150701 - NO_TRANSLATION retained_intron ENSMUSG00000027255 Arfgap2 ENSMUST00000080008 ENSMUSP00000078920 TRANSLATION protein_coding - CCDS16430.1 1 520.0 4.0 3.6875 10.3 110.0 0.0 -4,-6 1.0 17 15.0 PRINCIPAL:4 ENSMUSG00000027255 Arfgap2 ENSMUST00000128296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035877 Zhx3 ENSMUST00000176141 ENSMUSP00000134763 TRANSLATION protein_coding stop - 2 114.0 5.0 0.25 0.0 0.0 0.0 -4,-7 0.0325 1 -2.0 MINOR ENSMUSG00000035877 Zhx3 ENSMUST00000103112 ENSMUSP00000099401 TRANSLATION protein_coding - CCDS16997.1 1 951.0 8.0 0.25 4.9 140.0 0.0 -4,-7 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000035877 Zhx3 ENSMUST00000127201 ENSMUSP00000120488 TRANSLATION protein_coding stop - 2 101.0 4.0 0.0 0.0 0.0 0.0 -4,-7 0.0004 1 -2.0 MINOR ENSMUSG00000035877 Zhx3 ENSMUST00000133937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035877 Zhx3 ENSMUST00000109460 ENSMUSP00000105086 TRANSLATION protein_coding - CCDS16997.1 1 951.0 8.0 0.25 4.9 140.0 0.0 -4,-7 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000035877 Zhx3 ENSMUST00000103111 ENSMUSP00000099400 TRANSLATION protein_coding - CCDS16997.1 1 951.0 8.0 0.25 4.9 140.0 0.0 -4,-7 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000026814 Eng ENSMUST00000009705 ENSMUSP00000009705 TRANSLATION protein_coding - CCDS15925.1 1 653.0 0.0 10.65 4.1 36.6 2.0 2,-3 1.0 18 8.0 PRINCIPAL:4 ENSMUSG00000026814 Eng ENSMUST00000139770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026814 Eng ENSMUST00000167841 ENSMUSP00000130585 TRANSLATION protein_coding - CCDS50570.1 1 652.0 0.0 10.65 4.1 36.6 2.0 4,-1 0.9872 18 8.0 ALTERNATIVE:2 ENSMUSG00000026814 Eng ENSMUST00000156306 ENSMUSP00000122186 TRANSLATION protein_coding start/stop - 5 312.0 0.0 4.6 0.0 39.4 0.0 -4,-7 0.0136 7 -2.0 MINOR ENSMUSG00000026814 Eng ENSMUST00000113272 ENSMUSP00000108897 TRANSLATION protein_coding - CCDS50569.1 1 641.0 0.0 10.65 0.0 36.6 2.0 2,-3 0.3045 17 6.0 MINOR ENSMUSG00000026814 Eng ENSMUST00000192455 - NO_TRANSLATION retained_intron ENSMUSG00000000826 Dnajc5 ENSMUST00000108797 ENSMUSP00000104425 TRANSLATION protein_coding - CCDS17215.1 1 198.0 0.0 3.0 26.7 96.0 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000000826 Dnajc5 ENSMUST00000116365 ENSMUSP00000112066 TRANSLATION nonsense_mediated_decay - - 1 167.0 0.0 3.0 2.1 96.0 0.0 -4,-6 0.1859 5 -2.0 MINOR ENSMUSG00000000826 Dnajc5 ENSMUST00000072334 ENSMUSP00000072175 TRANSLATION protein_coding - CCDS17215.1 1 198.0 0.0 3.0 26.7 96.0 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000000826 Dnajc5 ENSMUST00000141523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000826 Dnajc5 ENSMUST00000152578 ENSMUSP00000116120 TRANSLATION protein_coding stop - 3 141.0 0.0 3.0 0.0 96.0 0.0 -4,-6 0.0067 5 -2.0 MINOR ENSMUSG00000000826 Dnajc5 ENSMUST00000108796 ENSMUSP00000104424 TRANSLATION protein_coding - CCDS17215.1 5 198.0 0.0 3.0 26.7 96.0 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000018211 Wfdc15b ENSMUST00000018355 ENSMUSP00000018355 TRANSLATION protein_coding - CCDS38320.1 1 80.0 0.0 1.75 1.5 36.0 0.0 1,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000018211 Wfdc15b ENSMUST00000109376 ENSMUSP00000105001 TRANSLATION protein_coding - CCDS38320.1 1 80.0 0.0 1.75 1.5 36.0 0.0 1,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000018211 Wfdc15b ENSMUST00000164567 ENSMUSP00000132507 TRANSLATION protein_coding - CCDS38320.1 2 80.0 0.0 1.75 1.5 36.0 0.0 1,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000026994 Galnt3 ENSMUST00000150793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026994 Galnt3 ENSMUST00000028378 ENSMUSP00000028378 TRANSLATION protein_coding - CCDS16075.1 1 633.0 21.0 9.8 17.2 199.6 0.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000026994 Galnt3 ENSMUST00000155453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026994 Galnt3 ENSMUST00000153563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017707 Serinc3 ENSMUST00000129854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017707 Serinc3 ENSMUST00000017851 ENSMUSP00000017851 TRANSLATION protein_coding - CCDS17013.1 1 472.0 0.0 2.788 10.3 549.7 0.0 0,-4 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000043241 Upf2 ENSMUST00000144901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043241 Upf2 ENSMUST00000060092 ENSMUSP00000058375 TRANSLATION protein_coding - CCDS38041.1 1 1269.0 0.0 9.35 22.2 386.6 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000043241 Upf2 ENSMUST00000128200 ENSMUSP00000119348 TRANSLATION protein_coding start - 1 523.0 0.0 4.6 0.0 258.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000016933 Plcg1 ENSMUST00000151590 ENSMUSP00000133771 TRANSLATION nonsense_mediated_decay - - 1 513.0 7.0 8.204 0.0 219.8 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000016933 Plcg1 ENSMUST00000103115 ENSMUSP00000099404 TRANSLATION protein_coding - CCDS16996.1 1 1302.0 13.0 20.834 0.0 628.0 0.0 -4,-5 0.4699 23 18.0 MINOR ENSMUSG00000016933 Plcg1 ENSMUST00000143997 ENSMUSP00000115181 TRANSLATION protein_coding start - 3 132.0 3.0 2.75 0.0 61.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000016933 Plcg1 ENSMUST00000124652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016933 Plcg1 ENSMUST00000109462 ENSMUSP00000105088 TRANSLATION protein_coding - - 5 1290.0 13.0 20.834 8.6 628.0 0.0 -4,-5 1.0 23 21.0 PRINCIPAL:1 ENSMUSG00000016933 Plcg1 ENSMUST00000173335 - NO_TRANSLATION retained_intron ENSMUSG00000016933 Plcg1 ENSMUST00000173061 - NO_TRANSLATION retained_intron ENSMUSG00000016933 Plcg1 ENSMUST00000173791 - NO_TRANSLATION retained_intron ENSMUSG00000016933 Plcg1 ENSMUST00000129568 - NO_TRANSLATION retained_intron ENSMUSG00000016933 Plcg1 ENSMUST00000147254 - NO_TRANSLATION retained_intron ENSMUSG00000016933 Plcg1 ENSMUST00000174885 ENSMUSP00000134720 TRANSLATION protein_coding stop - 2 110.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000016933 Plcg1 ENSMUST00000017077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035778 Ggta1 ENSMUST00000102794 ENSMUSP00000099858 TRANSLATION protein_coding - CCDS15964.2 1 406.0 4.0 2.5 0.0 540.8 2.0 -4,-7 1.0 2 12.0 PRINCIPAL:2 ENSMUSG00000035778 Ggta1 ENSMUST00000131745 ENSMUSP00000115112 TRANSLATION protein_coding stop - 5 141.0 0.0 1.5 0.0 97.4 2.0 -4,-2 0.0025 - -2.0 MINOR ENSMUSG00000035778 Ggta1 ENSMUST00000164889 ENSMUSP00000132408 TRANSLATION protein_coding - CCDS50576.1 5 394.0 4.0 2.5 0.0 540.8 2.0 -4,-7 0.428 2 12.0 ALTERNATIVE:2 ENSMUSG00000035778 Ggta1 ENSMUST00000079424 ENSMUSP00000078393 TRANSLATION protein_coding - CCDS79786.1 5 372.0 4.0 2.5 0.1 535.6 2.0 -4,-2 0.2878 2 11.0 ALTERNATIVE:2 ENSMUSG00000035778 Ggta1 ENSMUST00000113001 ENSMUSP00000108625 TRANSLATION protein_coding - CCDS79787.1 1 384.0 4.0 2.5 0.0 535.6 2.0 -4,-2 0.3065 2 11.0 ALTERNATIVE:2 ENSMUSG00000035778 Ggta1 ENSMUST00000130913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035778 Ggta1 ENSMUST00000113002 ENSMUSP00000108626 TRANSLATION protein_coding - CCDS50576.1 1 394.0 4.0 2.5 0.0 540.8 2.0 -4,-7 0.428 2 12.0 ALTERNATIVE:2 ENSMUSG00000035778 Ggta1 ENSMUST00000044255 ENSMUSP00000049408 TRANSLATION protein_coding - CCDS15964.2 5 406.0 4.0 2.5 0.0 540.8 2.0 -4,-7 1.0 2 12.0 PRINCIPAL:2 ENSMUSG00000035778 Ggta1 ENSMUST00000149442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039086 Ss18l1 ENSMUST00000041126 ENSMUSP00000041288 TRANSLATION protein_coding - CCDS17167.1 1 402.0 0.0 1.8 20.5 108.4 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000074771 Ankef1 ENSMUST00000131970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074771 Ankef1 ENSMUST00000154343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074771 Ankef1 ENSMUST00000121717 ENSMUSP00000113881 TRANSLATION protein_coding - CCDS38249.1 1 775.0 0.0 3.946 11.3 117.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074771 Ankef1 ENSMUST00000028726 ENSMUSP00000028726 TRANSLATION nonsense_mediated_decay - CCDS38249.1 1 775.0 0.0 3.946 11.3 117.9 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000074771 Ankef1 ENSMUST00000138967 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074771 Ankef1 ENSMUST00000154394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074771 Ankef1 ENSMUST00000150189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074771 Ankef1 ENSMUST00000149712 ENSMUSP00000114440 TRANSLATION nonsense_mediated_decay - - 2 183.0 0.0 1.08 0.0 37.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074771 Ankef1 ENSMUST00000123214 ENSMUSP00000120000 TRANSLATION protein_coding stop - 1 413.0 0.0 2.546 0.0 72.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000074771 Ankef1 ENSMUST00000180246 ENSMUSP00000135947 TRANSLATION protein_coding - CCDS38249.1 5 775.0 0.0 3.946 11.3 117.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026799 Med27 ENSMUST00000147547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026799 Med27 ENSMUST00000159034 ENSMUSP00000124233 TRANSLATION protein_coding - - 5 69.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 1 0.0 MINOR ENSMUSG00000026799 Med27 ENSMUST00000162773 - NO_TRANSLATION retained_intron ENSMUSG00000026799 Med27 ENSMUST00000162603 ENSMUSP00000125008 TRANSLATION protein_coding start/stop - 3 172.0 0.0 1.93 0.0 0.0 0.0 -2,-4 0.0 1 -2.0 MINOR ENSMUSG00000026799 Med27 ENSMUST00000028139 ENSMUSP00000028139 TRANSLATION protein_coding - CCDS15853.1 1 311.0 4.0 5.51 32.9 95.3 0.0 -4,-6 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000026799 Med27 ENSMUST00000162623 ENSMUSP00000125042 TRANSLATION protein_coding stop - 5 53.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000026799 Med27 ENSMUST00000159280 ENSMUSP00000125390 TRANSLATION protein_coding - CCDS79764.1 2 172.0 4.0 3.58 1.0 95.3 0.0 -4,-2 0.1172 4 12.142 MINOR ENSMUSG00000026799 Med27 ENSMUST00000123522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026799 Med27 ENSMUST00000113830 ENSMUSP00000109461 TRANSLATION protein_coding - CCDS71014.1 1 208.0 0.0 2.93 0.1 0.0 0.0 -4,-6 0.0092 2 0.84 MINOR ENSMUSG00000026799 Med27 ENSMUST00000162597 ENSMUSP00000125360 TRANSLATION protein_coding stop - 3 100.0 0.0 1.83 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000048327 Ckap2l ENSMUST00000052708 ENSMUSP00000056145 TRANSLATION protein_coding - CCDS16724.1 1 745.0 0.0 0.0 0.4 155.8 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000027598 Itch ENSMUST00000138468 - NO_TRANSLATION retained_intron ENSMUSG00000027598 Itch ENSMUST00000123497 - NO_TRANSLATION retained_intron ENSMUSG00000027598 Itch ENSMUST00000029126 ENSMUSP00000029126 TRANSLATION protein_coding - CCDS38293.1 1 864.0 0.0 18.15 9.2 520.6 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000027598 Itch ENSMUST00000155360 - NO_TRANSLATION retained_intron ENSMUSG00000027598 Itch ENSMUST00000142147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027598 Itch ENSMUST00000109685 ENSMUSP00000105307 TRANSLATION protein_coding - CCDS38293.1 1 864.0 0.0 18.15 9.2 520.6 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000027598 Itch ENSMUST00000126648 - NO_TRANSLATION retained_intron ENSMUSG00000042459 Bpifa2 ENSMUST00000048103 ENSMUSP00000046080 TRANSLATION protein_coding - CCDS16923.1 1 235.0 0.0 2.396 0.4 117.3 0.0 1,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000042459 Bpifa2 ENSMUST00000136467 - NO_TRANSLATION retained_intron ENSMUSG00000042459 Bpifa2 ENSMUST00000145388 ENSMUSP00000115384 TRANSLATION protein_coding stop - 3 211.0 0.0 2.23 0.0 113.9 0.0 1,-2 0.0419 6 -2.0 MINOR ENSMUSG00000042459 Bpifa2 ENSMUST00000132933 - NO_TRANSLATION retained_intron ENSMUSG00000026824 Kcnj3 ENSMUST00000067101 ENSMUSP00000063329 TRANSLATION protein_coding - CCDS16042.1 1 501.0 0.0 2.6 12.6 463.7 3.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000026824 Kcnj3 ENSMUST00000112632 ENSMUSP00000108251 TRANSLATION protein_coding - CCDS84524.1 1 235.0 0.0 1.0 9.1 277.3 3.0 -4,-6 0.5026 3 4.404 MINOR ENSMUSG00000026824 Kcnj3 ENSMUST00000112633 ENSMUSP00000108252 TRANSLATION protein_coding - CCDS16042.1 1 501.0 0.0 2.6 12.6 463.7 3.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000075164 Or5j1 ENSMUST00000213781 ENSMUSP00000149079 TRANSLATION protein_coding - CCDS16278.1 5 312.0 0.0 1.0 15.4 179.9 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075164 Or5j1 ENSMUST00000099867 ENSMUSP00000097452 TRANSLATION protein_coding - CCDS16278.1 - 312.0 0.0 1.0 15.4 179.9 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075164 Or5j1 ENSMUST00000217650 ENSMUSP00000149092 TRANSLATION protein_coding - CCDS16278.1 5 312.0 0.0 1.0 15.4 179.9 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027185 Nat10 ENSMUST00000028608 ENSMUSP00000028608 TRANSLATION protein_coding - CCDS16480.1 1 1024.0 19.0 3.573 4.3 926.6 0.0 -4,-7 1.0 28 20.0 PRINCIPAL:1 ENSMUSG00000027185 Nat10 ENSMUST00000148798 ENSMUSP00000129637 TRANSLATION protein_coding stop - 3 44.0 0.0 0.965 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000027185 Nat10 ENSMUST00000133016 - NO_TRANSLATION retained_intron ENSMUSG00000027185 Nat10 ENSMUST00000137050 - NO_TRANSLATION retained_intron ENSMUSG00000027185 Nat10 ENSMUST00000090447 - NO_TRANSLATION retained_intron ENSMUSG00000027185 Nat10 ENSMUST00000132135 - NO_TRANSLATION retained_intron ENSMUSG00000027185 Nat10 ENSMUST00000143017 - NO_TRANSLATION retained_intron ENSMUSG00000027185 Nat10 ENSMUST00000140895 ENSMUSP00000115072 TRANSLATION protein_coding stop - 3 186.0 0.0 1.373 0.0 101.1 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000027185 Nat10 ENSMUST00000151010 - NO_TRANSLATION retained_intron ENSMUSG00000027185 Nat10 ENSMUST00000144590 - NO_TRANSLATION retained_intron ENSMUSG00000027185 Nat10 ENSMUST00000145189 - NO_TRANSLATION retained_intron ENSMUSG00000027185 Nat10 ENSMUST00000165970 - NO_TRANSLATION retained_intron ENSMUSG00000027185 Nat10 ENSMUST00000127581 - NO_TRANSLATION retained_intron ENSMUSG00000027185 Nat10 ENSMUST00000137600 - NO_TRANSLATION retained_intron ENSMUSG00000049372 Or4c31 ENSMUST00000219871 ENSMUSP00000151738 TRANSLATION protein_coding - CCDS16337.1 5 303.0 0.0 1.5 9.9 161.3 6.0 -4,-7 1.0 - 13.074 PRINCIPAL:1 ENSMUSG00000049372 Or4c31 ENSMUST00000213115 ENSMUSP00000154094 TRANSLATION protein_coding - - 5 322.0 0.0 1.0 0.0 193.4 6.0 -4,-5 0.0458 - 10.002 MINOR ENSMUSG00000049372 Or4c31 ENSMUST00000102618 ENSMUSP00000099678 TRANSLATION protein_coding - CCDS16337.1 - 303.0 0.0 1.5 9.9 161.3 6.0 -4,-7 1.0 - 13.074 PRINCIPAL:1 ENSMUSG00000026889 Rbm18 ENSMUST00000028251 ENSMUSP00000028251 TRANSLATION protein_coding - CCDS15969.1 1 190.0 0.0 2.93 20.4 58.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026889 Rbm18 ENSMUST00000122456 ENSMUSP00000113204 TRANSLATION protein_coding - - 1 100.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - 1.23 MINOR ENSMUSG00000026889 Rbm18 ENSMUST00000200733 ENSMUSP00000144089 TRANSLATION nonsense_mediated_decay - - 5 85.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026889 Rbm18 ENSMUST00000134668 ENSMUSP00000117831 TRANSLATION nonsense_mediated_decay - - 2 77.0 0.0 1.43 0.0 22.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026889 Rbm18 ENSMUST00000142809 - NO_TRANSLATION retained_intron ENSMUSG00000026761 Orc4 ENSMUST00000150492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026761 Orc4 ENSMUST00000123271 ENSMUSP00000117732 TRANSLATION protein_coding stop - 5 49.0 3.0 1.33 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000026761 Orc4 ENSMUST00000154784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026761 Orc4 ENSMUST00000123789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026761 Orc4 ENSMUST00000028098 ENSMUSP00000028098 TRANSLATION protein_coding - CCDS16022.1 1 433.0 15.0 11.08 32.0 217.6 0.0 -4,-2 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000026761 Orc4 ENSMUST00000149679 ENSMUSP00000121114 TRANSLATION protein_coding stop - 2 72.0 9.0 2.08 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000026761 Orc4 ENSMUST00000153150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026761 Orc4 ENSMUST00000142851 ENSMUSP00000119274 TRANSLATION protein_coding stop - 5 237.0 12.0 6.08 0.0 49.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000026761 Orc4 ENSMUST00000128618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026761 Orc4 ENSMUST00000090976 ENSMUSP00000088497 TRANSLATION protein_coding - CCDS50582.1 1 138.0 10.0 3.58 0.0 20.2 0.0 -4,-2 0.0007 1 2.664 MINOR ENSMUSG00000026761 Orc4 ENSMUST00000123809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026761 Orc4 ENSMUST00000141441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026761 Orc4 ENSMUST00000156956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039050 Osbpl2 ENSMUST00000040668 ENSMUSP00000046538 TRANSLATION protein_coding - CCDS17170.1 1 484.0 0.0 9.5 17.8 486.4 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000039050 Osbpl2 ENSMUST00000142376 - NO_TRANSLATION retained_intron ENSMUSG00000039050 Osbpl2 ENSMUST00000140210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039050 Osbpl2 ENSMUST00000124225 - NO_TRANSLATION retained_intron ENSMUSG00000039001 Rps21 ENSMUST00000059080 ENSMUSP00000058432 TRANSLATION protein_coding - CCDS38376.1 1 83.0 0.0 2.5 36.9 142.8 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000039001 Rps21 ENSMUST00000125301 - NO_TRANSLATION retained_intron ENSMUSG00000039001 Rps21 ENSMUST00000145043 - NO_TRANSLATION retained_intron ENSMUSG00000039001 Rps21 ENSMUST00000148629 - NO_TRANSLATION retained_intron ENSMUSG00000026730 Pter ENSMUST00000028063 ENSMUSP00000028063 TRANSLATION protein_coding - CCDS84471.1 1 260.0 6.0 3.75 0.0 369.3 0.0 -4,-6 0.0036 7 6.144 MINOR ENSMUSG00000026730 Pter ENSMUST00000195521 - NO_TRANSLATION retained_intron ENSMUSG00000026730 Pter ENSMUST00000193742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026730 Pter ENSMUST00000114796 ENSMUSP00000110444 TRANSLATION protein_coding stop - 5 253.0 6.0 4.5 0.0 327.7 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000026730 Pter ENSMUST00000154269 ENSMUSP00000118645 TRANSLATION protein_coding stop - 5 321.0 7.0 5.5 0.0 452.0 0.0 -4,-6 0.0042 9 -2.0 MINOR ENSMUSG00000026730 Pter ENSMUST00000134794 ENSMUSP00000117009 TRANSLATION protein_coding - CCDS15691.1 1 349.0 7.0 6.25 34.2 501.7 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000026730 Pter ENSMUST00000150283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035437 Rabgap1 ENSMUST00000061179 ENSMUSP00000061624 TRANSLATION protein_coding - CCDS16002.1 1 1064.0 0.0 8.48 19.1 340.0 1.0 -4,-5 1.0 25 16.0 PRINCIPAL:1 ENSMUSG00000035437 Rabgap1 ENSMUST00000066055 ENSMUSP00000068835 TRANSLATION protein_coding - CCDS16003.1 1 809.0 0.0 7.546 1.0 340.0 1.0 -4,-5 0.2076 19 10.134 MINOR ENSMUSG00000035437 Rabgap1 ENSMUST00000203470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035437 Rabgap1 ENSMUST00000159092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035437 Rabgap1 ENSMUST00000148470 ENSMUSP00000119831 TRANSLATION protein_coding stop - 3 147.0 0.0 0.165 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035437 Rabgap1 ENSMUST00000130601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035437 Rabgap1 ENSMUST00000133434 ENSMUSP00000121963 TRANSLATION protein_coding stop - 5 455.0 0.0 0.63 0.0 144.7 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000035437 Rabgap1 ENSMUST00000112920 ENSMUSP00000108542 TRANSLATION protein_coding - CCDS16002.1 5 1064.0 0.0 8.48 19.1 340.0 1.0 -4,-5 1.0 25 16.0 PRINCIPAL:1 ENSMUSG00000035437 Rabgap1 ENSMUST00000153145 - NO_TRANSLATION retained_intron ENSMUSG00000035437 Rabgap1 ENSMUST00000205186 - NO_TRANSLATION retained_intron ENSMUSG00000023393 Slc17a9 ENSMUST00000139817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023393 Slc17a9 ENSMUST00000154882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023393 Slc17a9 ENSMUST00000140955 - NO_TRANSLATION retained_intron ENSMUSG00000023393 Slc17a9 ENSMUST00000094218 ENSMUSP00000091771 TRANSLATION protein_coding - CCDS38378.1 5 447.0 0.0 5.394 0.4 176.2 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000023393 Slc17a9 ENSMUST00000151882 - NO_TRANSLATION retained_intron ENSMUSG00000036850 Mrpl41 ENSMUST00000194392 ENSMUSP00000141974 TRANSLATION protein_coding stop - 3 97.0 0.0 1.0 0.0 42.6 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000036850 Mrpl41 ENSMUST00000045604 ENSMUSP00000043561 TRANSLATION protein_coding - CCDS15744.1 1 135.0 0.0 2.0 27.6 150.0 0.0 -4,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000038740 Mvb12b ENSMUST00000192765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038740 Mvb12b ENSMUST00000195203 - NO_TRANSLATION retained_intron ENSMUSG00000038740 Mvb12b ENSMUST00000041555 ENSMUSP00000048901 TRANSLATION protein_coding - CCDS15946.1 1 317.0 0.0 4.8 12.4 282.3 0.0 -4,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000038740 Mvb12b ENSMUST00000148660 ENSMUSP00000115744 TRANSLATION protein_coding stop - 3 189.0 0.0 4.8 0.0 215.6 0.0 -4,-5 0.0171 1 -2.0 MINOR ENSMUSG00000038740 Mvb12b ENSMUST00000146892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035875 AI182371 ENSMUST00000134940 ENSMUSP00000144276 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000035875 AI182371 ENSMUST00000226972 ENSMUSP00000154033 TRANSLATION protein_coding - - - 351.0 0.0 6.3 0.0 98.0 0.0 0,-4 0.1557 7 7.802 ALTERNATIVE:2 ENSMUSG00000035875 AI182371 ENSMUST00000045776 ENSMUSP00000037754 TRANSLATION protein_coding - CCDS15958.2 1 356.0 0.0 6.4 0.0 98.0 0.0 4,-1 1.0 7 8.0 PRINCIPAL:2 ENSMUSG00000035875 AI182371 ENSMUST00000154817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035875 AI182371 ENSMUST00000226631 ENSMUSP00000154570 TRANSLATION protein_coding - - - 352.0 0.0 6.3 0.0 98.0 0.0 0,-4 0.1596 7 7.802 ALTERNATIVE:2 ENSMUSG00000035875 AI182371 ENSMUST00000151161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035875 AI182371 ENSMUST00000226375 ENSMUSP00000154339 TRANSLATION nonsense_mediated_decay - - - 57.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000015085 Entpd2 ENSMUST00000140590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015085 Entpd2 ENSMUST00000028328 ENSMUSP00000028328 TRANSLATION protein_coding - CCDS15770.1 1 495.0 0.0 9.0 3.5 338.7 0.0 1,-3 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000015085 Entpd2 ENSMUST00000148859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000085484 Gm13539 ENSMUST00000211245 ENSMUSP00000147998 TRANSLATION protein_coding - - 5 183.0 0.0 4.68 0.0 31.9 0.0 4,-1 0.8135 - 12.0 PRINCIPAL:1 ENSMUSG00000085484 Gm13539 ENSMUST00000153913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037279 Ovol2 ENSMUST00000037423 ENSMUSP00000044026 TRANSLATION protein_coding - CCDS16817.1 1 274.0 15.0 1.8 8.8 82.8 0.0 -4,-2 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000037279 Ovol2 ENSMUST00000138582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037279 Ovol2 ENSMUST00000103171 ENSMUSP00000099460 TRANSLATION protein_coding - CCDS16818.1 1 241.0 15.0 1.8 0.1 82.8 0.0 -4,-5 0.1735 1 18.0 MINOR ENSMUSG00000036401 Glt6d1 ENSMUST00000038010 ENSMUSP00000048642 TRANSLATION protein_coding - CCDS15791.1 1 311.0 0.0 2.5 1.1 328.0 0.0 2,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000036401 Glt6d1 ENSMUST00000130316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075150 Or5w14 ENSMUST00000099850 ENSMUSP00000097437 TRANSLATION protein_coding - CCDS16304.1 - 310.0 0.0 1.0 14.5 154.4 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075150 Or5w14 ENSMUST00000214209 ENSMUSP00000149311 TRANSLATION protein_coding - CCDS16304.1 5 310.0 0.0 1.0 14.5 154.4 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000058620 Adra2b ENSMUST00000104934 ENSMUSP00000100539 TRANSLATION protein_coding - - - 448.0 0.0 0.6 8.6 241.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058620 Adra2b ENSMUST00000071902 ENSMUSP00000071798 TRANSLATION protein_coding - CCDS16701.1 - 453.0 0.0 0.6 0.8 241.8 6.0 -4,-5 0.6125 - 12.0 MINOR ENSMUSG00000027014 Cwc22 ENSMUST00000149012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027014 Cwc22 ENSMUST00000065889 ENSMUSP00000064947 TRANSLATION protein_coding - CCDS16165.1 1 908.0 0.0 11.382 0.9 130.7 0.0 -4,-2 0.5673 2 8.0 ALTERNATIVE:2 ENSMUSG00000027014 Cwc22 ENSMUST00000111819 ENSMUSP00000107450 TRANSLATION protein_coding - CCDS71080.1 1 903.0 0.0 11.382 3.1 130.7 0.0 -4,-2 1.0 2 9.0 PRINCIPAL:4 ENSMUSG00000027014 Cwc22 ENSMUST00000156863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027014 Cwc22 ENSMUST00000111824 ENSMUSP00000107455 TRANSLATION protein_coding - - 1 723.0 0.0 11.382 0.0 130.7 0.0 -4,-2 0.0602 2 8.0 ALTERNATIVE:2 ENSMUSG00000027014 Cwc22 ENSMUST00000127289 ENSMUSP00000122338 TRANSLATION protein_coding stop - 5 139.0 0.0 0.75 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000027014 Cwc22 ENSMUST00000127351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027014 Cwc22 ENSMUST00000144727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027014 Cwc22 ENSMUST00000111818 ENSMUSP00000107449 TRANSLATION protein_coding - CCDS57178.1 1 902.0 0.0 11.382 1.4 130.7 0.0 -4,-2 0.7716 2 8.19 ALTERNATIVE:2 ENSMUSG00000027014 Cwc22 ENSMUST00000139842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027014 Cwc22 ENSMUST00000128963 ENSMUSP00000115067 TRANSLATION protein_coding stop - 2 109.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000027014 Cwc22 ENSMUST00000137494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027014 Cwc22 ENSMUST00000111821 ENSMUSP00000107452 TRANSLATION protein_coding - CCDS16165.1 5 908.0 0.0 11.382 0.9 130.7 0.0 -4,-2 0.5673 2 8.0 ALTERNATIVE:2 ENSMUSG00000015619 Gata3 ENSMUST00000151456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015619 Gata3 ENSMUST00000153509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015619 Gata3 ENSMUST00000130615 ENSMUSP00000119730 TRANSLATION protein_coding stop - 5 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015619 Gata3 ENSMUST00000102976 ENSMUSP00000100041 TRANSLATION protein_coding - CCDS15674.1 1 443.0 8.0 2.4 20.4 106.6 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000015619 Gata3 ENSMUST00000142305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015619 Gata3 ENSMUST00000147533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061136 Prpf40a ENSMUST00000125243 ENSMUSP00000117406 TRANSLATION nonsense_mediated_decay start - 5 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000061136 Prpf40a ENSMUST00000211102 ENSMUSP00000148161 TRANSLATION nonsense_mediated_decay start - 5 84.0 0.0 0.264 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000061136 Prpf40a ENSMUST00000152922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061136 Prpf40a ENSMUST00000211712 ENSMUSP00000147939 TRANSLATION nonsense_mediated_decay - - 5 102.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000061136 Prpf40a ENSMUST00000132031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061136 Prpf40a ENSMUST00000076313 ENSMUSP00000075655 TRANSLATION protein_coding start - 1 966.0 0.0 13.164 6.5 250.0 0.0 -4,-2 0.8945 16 -2.0 MINOR ENSMUSG00000061136 Prpf40a ENSMUST00000209364 ENSMUSP00000147671 TRANSLATION protein_coding - - 5 926.0 0.0 13.164 6.4 250.0 0.0 -4,-1 1.0 14 13.964 PRINCIPAL:1 ENSMUSG00000061136 Prpf40a ENSMUST00000209508 ENSMUSP00000147910 TRANSLATION nonsense_mediated_decay - - 5 144.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000061136 Prpf40a ENSMUST00000239398 ENSMUSP00000159339 TRANSLATION protein_coding - CCDS16038.1 - 953.0 0.0 13.164 1.2 250.0 0.0 -4,-5 0.5232 16 12.072 MINOR ENSMUSG00000061136 Prpf40a ENSMUST00000210789 ENSMUSP00000147599 TRANSLATION protein_coding - - 5 926.0 0.0 13.164 6.4 250.0 0.0 -4,-1 1.0 14 13.964 PRINCIPAL:1 ENSMUSG00000061136 Prpf40a ENSMUST00000133384 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053287 Or9g19 ENSMUST00000065626 ENSMUSP00000068173 TRANSLATION protein_coding - CCDS16218.1 - 305.0 0.0 1.0 11.4 166.7 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053287 Or9g19 ENSMUST00000216397 ENSMUSP00000150201 TRANSLATION protein_coding - CCDS16218.1 2 305.0 0.0 1.0 11.4 166.7 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032724 Abtb2 ENSMUST00000138580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032724 Abtb2 ENSMUST00000131122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032724 Abtb2 ENSMUST00000076212 ENSMUSP00000075566 TRANSLATION protein_coding - CCDS16479.1 1 1024.0 0.0 5.335 18.0 126.3 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000095545 Zfp969 ENSMUST00000179061 ENSMUSP00000136479 TRANSLATION protein_coding - - 3 485.0 53.0 2.3 0.0 316.6 0.0 -4,-6 0.8005 - 18.0 PRINCIPAL:1 ENSMUSG00000095545 Zfp969 ENSMUST00000249319 ENSMUSP00000159692 TRANSLATION protein_coding - - - 83.0 0.0 1.75 0.0 73.1 0.0 -4,-6 0.0 - 4.566 MINOR ENSMUSG00000027613 Eif6 ENSMUST00000154841 ENSMUSP00000115715 TRANSLATION nonsense_mediated_decay - - 5 59.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027613 Eif6 ENSMUST00000138962 - NO_TRANSLATION retained_intron ENSMUSG00000027613 Eif6 ENSMUST00000134278 ENSMUSP00000123190 TRANSLATION protein_coding stop - 2 58.0 0.0 1.0 0.0 75.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000027613 Eif6 ENSMUST00000109638 ENSMUSP00000105266 TRANSLATION protein_coding - - 1 81.0 0.0 1.85 0.0 56.2 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000027613 Eif6 ENSMUST00000029142 ENSMUSP00000029142 TRANSLATION protein_coding - CCDS16956.1 1 245.0 0.0 5.58 35.9 267.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000027613 Eif6 ENSMUST00000129830 ENSMUSP00000120206 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 1.948 0.0 56.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027613 Eif6 ENSMUST00000134811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046229 Scand1 ENSMUST00000079125 ENSMUSP00000105211 TRANSLATION protein_coding - CCDS38298.1 1 142.0 0.0 1.0 0.1 89.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026773 Pfkfb3 ENSMUST00000100411 ENSMUSP00000097979 TRANSLATION protein_coding - - 5 513.0 21.0 11.0 28.6 357.8 0.0 -4,-7 0.8657 11 17.448 ALTERNATIVE:1 ENSMUSG00000026773 Pfkfb3 ENSMUST00000192949 ENSMUSP00000142296 TRANSLATION protein_coding - CCDS79733.1 1 500.0 21.0 10.516 3.8 357.4 0.0 -4,-2 0.2691 11 12.886 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000191668 ENSMUSP00000142079 TRANSLATION protein_coding - CCDS50501.1 1 555.0 21.0 11.075 0.4 357.8 0.0 -4,-7 0.11 11 13.598 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000144921 - NO_TRANSLATION retained_intron ENSMUSG00000026773 Pfkfb3 ENSMUST00000155167 - NO_TRANSLATION retained_intron ENSMUSG00000026773 Pfkfb3 ENSMUST00000192827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026773 Pfkfb3 ENSMUST00000183869 ENSMUSP00000138893 TRANSLATION protein_coding - CCDS50498.1 1 462.0 21.0 11.2 5.1 357.8 0.0 -4,-7 0.3371 10 14.446 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000114845 ENSMUSP00000110494 TRANSLATION protein_coding - CCDS50499.1 5 526.0 21.0 11.0 5.9 357.8 0.0 -4,-7 0.4066 11 14.16 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000195779 ENSMUSP00000141445 TRANSLATION nonsense_mediated_decay - - 5 327.0 14.0 6.566 0.0 345.6 0.0 -4,-2 0.0108 6 -2.0 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000140580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026773 Pfkfb3 ENSMUST00000170196 ENSMUSP00000126305 TRANSLATION protein_coding - CCDS50500.1 1 543.0 21.0 11.075 0.4 357.8 0.0 -4,-7 0.111 11 13.598 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000114846 ENSMUSP00000110495 TRANSLATION protein_coding - CCDS15683.1 1 520.0 21.0 11.2 9.8 357.8 0.0 -4,-7 0.5441 11 15.126 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000114844 ENSMUSP00000110493 TRANSLATION protein_coding - - 5 542.0 21.0 11.075 0.4 357.8 0.0 -4,-7 0.088 11 13.598 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000150086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026773 Pfkfb3 ENSMUST00000049849 ENSMUSP00000050926 TRANSLATION protein_coding - CCDS79731.1 1 514.0 21.0 11.0 28.6 357.8 0.0 -4,-7 1.0 11 17.448 PRINCIPAL:4 ENSMUSG00000026773 Pfkfb3 ENSMUST00000028114 ENSMUSP00000028114 TRANSLATION protein_coding - CCDS50499.1 1 526.0 21.0 11.0 5.9 357.8 0.0 -4,-7 0.4066 11 14.16 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000191726 - NO_TRANSLATION retained_intron ENSMUSG00000026773 Pfkfb3 ENSMUST00000171188 ENSMUSP00000129122 TRANSLATION protein_coding - CCDS50501.1 5 555.0 21.0 11.075 0.4 357.8 0.0 -4,-7 0.11 11 13.598 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000179584 ENSMUSP00000137130 TRANSLATION protein_coding - CCDS79732.1 1 549.0 21.0 11.275 0.4 357.8 0.0 -4,-7 0.1589 11 14.0 MINOR ENSMUSG00000026773 Pfkfb3 ENSMUST00000145970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026773 Pfkfb3 ENSMUST00000192844 - NO_TRANSLATION retained_intron ENSMUSG00000026784 Pdss1 ENSMUST00000149229 ENSMUSP00000114242 TRANSLATION nonsense_mediated_decay start - 3 44.0 0.0 0.375 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026784 Pdss1 ENSMUST00000148072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026784 Pdss1 ENSMUST00000152170 ENSMUSP00000121873 TRANSLATION protein_coding - - 1 280.0 21.0 3.83 0.0 161.5 0.0 -4,0 0.0004 1 3.48 MINOR ENSMUSG00000026784 Pdss1 ENSMUST00000053729 ENSMUSP00000055689 TRANSLATION protein_coding - CCDS38057.1 1 409.0 29.0 6.073 3.7 239.8 0.0 -4,0 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000026784 Pdss1 ENSMUST00000141215 ENSMUSP00000116206 TRANSLATION protein_coding stop - 3 75.0 0.0 0.398 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026784 Pdss1 ENSMUST00000135621 ENSMUSP00000116089 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000026784 Pdss1 ENSMUST00000139472 - NO_TRANSLATION retained_intron ENSMUSG00000027086 Fastkd1 ENSMUST00000129260 - NO_TRANSLATION retained_intron ENSMUSG00000027086 Fastkd1 ENSMUST00000140776 - NO_TRANSLATION retained_intron ENSMUSG00000027086 Fastkd1 ENSMUST00000102706 ENSMUSP00000099767 TRANSLATION protein_coding - - 5 800.0 0.0 1.865 0.0 219.7 0.0 -2,-1 0.0805 2 10.836 MINOR ENSMUSG00000027086 Fastkd1 ENSMUST00000073152 ENSMUSP00000072896 TRANSLATION protein_coding - CCDS16096.1 1 829.0 0.0 2.315 6.4 219.7 0.0 -2,-1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000027208 Fgf7 ENSMUST00000138576 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027208 Fgf7 ENSMUST00000064794 ENSMUSP00000069681 TRANSLATION protein_coding - CCDS16681.1 1 194.0 7.0 2.6 24.9 164.3 0.0 -1,-4 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000027208 Fgf7 ENSMUST00000110442 ENSMUSP00000106072 TRANSLATION protein_coding - CCDS16681.1 1 194.0 7.0 2.6 24.9 164.3 0.0 -1,-4 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000040794 C1qtnf4 ENSMUST00000111466 ENSMUSP00000107091 TRANSLATION protein_coding - CCDS16417.2 1 326.0 0.0 0.25 0.0 238.3 0.0 3,-4 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000111689 Or8k35 ENSMUST00000215600 ENSMUSP00000150706 TRANSLATION protein_coding - CCDS38172.1 3 313.0 0.0 1.0 11.0 159.7 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000089756 Zfp966 ENSMUST00000109018 ENSMUSP00000104646 TRANSLATION protein_coding - CCDS50824.1 3 138.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0344 - 2.772 MINOR ENSMUSG00000089756 Zfp966 ENSMUST00000108949 ENSMUSP00000104577 TRANSLATION protein_coding - CCDS50825.1 3 485.0 53.0 1.3 0.0 312.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000070529 Wfdc10 ENSMUST00000094344 ENSMUSP00000091904 TRANSLATION protein_coding - CCDS17049.1 1 124.0 0.0 1.0 0.1 0.0 0.0 3,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000035772 Mrps2 ENSMUST00000123533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035772 Mrps2 ENSMUST00000146332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035772 Mrps2 ENSMUST00000038600 ENSMUSP00000036725 TRANSLATION protein_coding - CCDS15838.1 1 291.0 0.0 2.0 2.4 0.0 0.0 -4,-1 1.0 5 7.0 PRINCIPAL:1 ENSMUSG00000027642 Rpn2 ENSMUST00000150349 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027642 Rpn2 ENSMUST00000156007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027642 Rpn2 ENSMUST00000029171 ENSMUSP00000029171 TRANSLATION protein_coding - - 5 615.0 0.0 5.375 1.0 694.6 2.0 4,-1 0.1787 22 8.976 MINOR ENSMUSG00000027642 Rpn2 ENSMUST00000149924 - NO_TRANSLATION retained_intron ENSMUSG00000027642 Rpn2 ENSMUST00000116380 ENSMUSP00000112081 TRANSLATION protein_coding - CCDS16975.1 1 631.0 0.0 5.375 18.2 745.0 2.0 4,-1 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000027642 Rpn2 ENSMUST00000142463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027642 Rpn2 ENSMUST00000126248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027642 Rpn2 ENSMUST00000141934 - NO_TRANSLATION retained_intron ENSMUSG00000027642 Rpn2 ENSMUST00000125311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027642 Rpn2 ENSMUST00000123639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027642 Rpn2 ENSMUST00000127252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027524 Edn3 ENSMUST00000137369 - NO_TRANSLATION retained_intron ENSMUSG00000027524 Edn3 ENSMUST00000140908 ENSMUSP00000125602 TRANSLATION protein_coding - - 5 166.0 0.0 0.6 0.1 0.0 0.0 3,-2 0.1663 - 6.0 ALTERNATIVE:2 ENSMUSG00000027524 Edn3 ENSMUST00000029030 ENSMUSP00000029030 TRANSLATION protein_coding - CCDS17156.1 1 214.0 0.0 0.6 1.1 0.0 0.0 3,-2 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000027524 Edn3 ENSMUST00000162473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026914 Psmd14 ENSMUST00000028278 ENSMUSP00000028278 TRANSLATION protein_coding - CCDS38127.1 1 310.0 3.0 8.0 36.0 168.6 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000026914 Psmd14 ENSMUST00000146051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026914 Psmd14 ENSMUST00000153683 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026914 Psmd14 ENSMUST00000134658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026914 Psmd14 ENSMUST00000135265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026914 Psmd14 ENSMUST00000139475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026914 Psmd14 ENSMUST00000154627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026914 Psmd14 ENSMUST00000125388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026791 Slc2a8 ENSMUST00000195863 ENSMUSP00000141879 TRANSLATION protein_coding stop - 2 60.0 4.0 1.75 0.0 61.5 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026791 Slc2a8 ENSMUST00000123643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026791 Slc2a8 ENSMUST00000130769 - NO_TRANSLATION retained_intron ENSMUSG00000026791 Slc2a8 ENSMUST00000194066 ENSMUSP00000141969 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026791 Slc2a8 ENSMUST00000028129 ENSMUSP00000028129 TRANSLATION protein_coding - CCDS15937.1 1 477.0 10.0 7.404 9.9 323.9 19.0 -4,-6 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000026791 Slc2a8 ENSMUST00000191777 - NO_TRANSLATION retained_intron ENSMUSG00000026791 Slc2a8 ENSMUST00000153484 ENSMUSP00000141959 TRANSLATION protein_coding - - 1 329.0 7.0 4.34 0.0 194.4 15.0 -4,-6 0.0021 - 4.002 MINOR ENSMUSG00000026791 Slc2a8 ENSMUST00000193695 ENSMUSP00000142100 TRANSLATION nonsense_mediated_decay - - 1 291.0 7.0 4.34 0.1 194.2 15.0 -4,-6 0.0039 - -2.0 MINOR ENSMUSG00000026643 Nmt2 ENSMUST00000102989 ENSMUSP00000100054 TRANSLATION protein_coding - CCDS70971.1 5 498.0 33.0 9.13 30.2 527.3 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000026643 Nmt2 ENSMUST00000081932 ENSMUSP00000080600 TRANSLATION protein_coding - CCDS15644.1 1 529.0 33.0 9.13 0.4 527.3 0.0 -4,-5 0.1691 9 18.0 MINOR ENSMUSG00000026643 Nmt2 ENSMUST00000091504 ENSMUSP00000089085 TRANSLATION protein_coding - CCDS70972.1 5 485.0 33.0 9.13 4.2 527.3 0.0 -4,-5 0.3616 9 18.44 MINOR ENSMUSG00000026643 Nmt2 ENSMUST00000155761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050700 Emilin3 ENSMUST00000109454 ENSMUSP00000105080 TRANSLATION protein_coding - CCDS71181.1 5 711.0 0.0 0.0 0.1 56.3 0.0 4,-3 0.265 3 6.0 MINOR ENSMUSG00000050700 Emilin3 ENSMUST00000057169 ENSMUSP00000059732 TRANSLATION protein_coding - CCDS16999.1 1 758.0 0.0 0.0 5.0 56.3 0.0 4,-3 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000002732 Fkbp7 ENSMUST00000154097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002732 Fkbp7 ENSMUST00000147355 - NO_TRANSLATION retained_intron ENSMUSG00000002732 Fkbp7 ENSMUST00000176815 ENSMUSP00000135000 TRANSLATION nonsense_mediated_decay - - 3 123.0 0.0 2.0 0.0 73.0 0.0 3,-2 0.0 3 -2.0 MINOR ENSMUSG00000002732 Fkbp7 ENSMUST00000002809 ENSMUSP00000002809 TRANSLATION protein_coding - CCDS16161.1 1 218.0 9.0 4.0 10.5 137.2 0.0 3,-2 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000027525 Phactr3 ENSMUST00000108917 ENSMUSP00000104545 TRANSLATION protein_coding - CCDS50838.1 1 553.0 0.0 4.0 0.4 52.9 0.0 -4,-1 0.3751 6 8.0 MINOR ENSMUSG00000027525 Phactr3 ENSMUST00000141272 - NO_TRANSLATION retained_intron ENSMUSG00000027525 Phactr3 ENSMUST00000108915 ENSMUSP00000104543 TRANSLATION protein_coding - CCDS50839.1 1 559.0 0.0 4.0 0.0 53.8 0.0 -4,-1 0.4415 6 8.0 MINOR ENSMUSG00000027525 Phactr3 ENSMUST00000108916 ENSMUSP00000104544 TRANSLATION protein_coding - CCDS50837.1 1 554.0 0.0 4.0 0.4 53.8 0.0 -4,-1 0.3764 6 8.0 MINOR ENSMUSG00000027525 Phactr3 ENSMUST00000103065 ENSMUSP00000099354 TRANSLATION protein_coding - CCDS17159.1 1 518.0 0.0 4.0 5.4 53.8 0.0 -4,-6 0.8273 6 9.492 ALTERNATIVE:1 ENSMUSG00000027525 Phactr3 ENSMUST00000103066 ENSMUSP00000099355 TRANSLATION protein_coding - CCDS17158.1 1 558.0 0.0 4.0 6.9 53.8 0.0 -4,-6 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000027525 Phactr3 ENSMUST00000133267 ENSMUSP00000158899 TRANSLATION protein_coding - - 5 128.0 0.0 3.3 1.1 57.8 0.0 -4,0 0.1876 2 6.636 MINOR ENSMUSG00000005506 Celf1 ENSMUST00000150546 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005506 Celf1 ENSMUST00000111455 ENSMUSP00000107082 TRANSLATION protein_coding - CCDS16420.1 5 513.0 0.0 6.9 8.4 171.6 0.0 -4,-5 0.9467 5 11.0 ALTERNATIVE:1 ENSMUSG00000005506 Celf1 ENSMUST00000127580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005506 Celf1 ENSMUST00000068726 ENSMUSP00000064323 TRANSLATION protein_coding - - 1 487.0 0.0 6.9 7.0 171.6 0.0 -4,-5 0.8297 5 10.433 ALTERNATIVE:1 ENSMUSG00000005506 Celf1 ENSMUST00000111448 ENSMUSP00000107075 TRANSLATION protein_coding - - 5 483.0 0.0 6.9 5.4 171.6 0.0 -4,-5 0.7419 5 9.785 MINOR ENSMUSG00000005506 Celf1 ENSMUST00000111449 ENSMUSP00000107076 TRANSLATION protein_coding - CCDS16421.1 1 486.0 0.0 6.9 8.4 171.6 0.0 -4,-5 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000005506 Celf1 ENSMUST00000133657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005506 Celf1 ENSMUST00000111452 ENSMUSP00000107079 TRANSLATION protein_coding - CCDS16420.1 5 513.0 0.0 6.9 8.4 171.6 0.0 -4,-5 0.9467 5 11.0 ALTERNATIVE:1 ENSMUSG00000005506 Celf1 ENSMUST00000068747 ENSMUSP00000070438 TRANSLATION protein_coding - CCDS16421.1 1 486.0 0.0 6.9 8.4 171.6 0.0 -4,-5 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000005506 Celf1 ENSMUST00000005643 ENSMUSP00000005643 TRANSLATION protein_coding - CCDS16420.1 5 513.0 0.0 6.9 8.4 171.6 0.0 -4,-5 0.9467 5 11.0 ALTERNATIVE:1 ENSMUSG00000005506 Celf1 ENSMUST00000154442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005506 Celf1 ENSMUST00000111451 ENSMUSP00000107078 TRANSLATION protein_coding - CCDS16421.1 5 486.0 0.0 6.9 8.4 171.6 0.0 -4,-5 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000005506 Celf1 ENSMUST00000127385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005506 Celf1 ENSMUST00000177642 ENSMUSP00000136109 TRANSLATION protein_coding - CCDS16421.1 1 486.0 0.0 6.9 8.4 171.6 0.0 -4,-5 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000027416 Otor ENSMUST00000028902 ENSMUSP00000028902 TRANSLATION protein_coding - CCDS16809.1 1 128.0 0.0 1.864 8.0 51.4 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075012 Fjx1 ENSMUST00000099678 ENSMUSP00000097270 TRANSLATION protein_coding - CCDS16467.1 - 450.0 0.0 1.0 0.1 0.0 0.0 1,-3 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000027427 Polr3f ENSMUST00000152311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027427 Polr3f ENSMUST00000136999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027427 Polr3f ENSMUST00000155567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027427 Polr3f ENSMUST00000134051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027427 Polr3f ENSMUST00000110017 ENSMUSP00000105644 TRANSLATION protein_coding - - 1 141.0 0.0 3.25 0.0 79.2 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000027427 Polr3f ENSMUST00000143292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027427 Polr3f ENSMUST00000028914 ENSMUSP00000028914 TRANSLATION protein_coding - CCDS16820.1 1 316.0 0.0 8.0 32.8 353.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000047909 Ankrd16 ENSMUST00000056108 ENSMUSP00000052056 TRANSLATION protein_coding - CCDS50502.1 5 361.0 0.0 7.5 4.1 178.8 0.0 -4,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000047909 Ankrd16 ENSMUST00000125024 - NO_TRANSLATION retained_intron ENSMUSG00000047909 Ankrd16 ENSMUST00000150213 - NO_TRANSLATION retained_intron ENSMUSG00000047909 Ankrd16 ENSMUST00000145547 - NO_TRANSLATION retained_intron ENSMUSG00000047909 Ankrd16 ENSMUST00000150320 - NO_TRANSLATION retained_intron ENSMUSG00000047909 Ankrd16 ENSMUST00000194100 - NO_TRANSLATION retained_intron ENSMUSG00000047909 Ankrd16 ENSMUST00000142622 - NO_TRANSLATION retained_intron ENSMUSG00000047909 Ankrd16 ENSMUST00000133664 ENSMUSP00000115226 TRANSLATION nonsense_mediated_decay start - 5 56.0 0.0 1.5 0.0 42.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000047909 Ankrd16 ENSMUST00000148498 - NO_TRANSLATION retained_intron ENSMUSG00000047909 Ankrd16 ENSMUST00000130186 ENSMUSP00000141685 TRANSLATION protein_coding stop - 3 90.0 0.0 1.0 0.0 45.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000047909 Ankrd16 ENSMUST00000156067 ENSMUSP00000115525 TRANSLATION nonsense_mediated_decay - - 1 166.0 0.0 2.8 0.0 77.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000047909 Ankrd16 ENSMUST00000128774 ENSMUSP00000121218 TRANSLATION nonsense_mediated_decay start - 3 76.0 0.0 1.0 0.0 31.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000003660 Snrnp200 ENSMUST00000131435 - NO_TRANSLATION retained_intron ENSMUSG00000003660 Snrnp200 ENSMUST00000142327 - NO_TRANSLATION retained_intron ENSMUSG00000003660 Snrnp200 ENSMUST00000103220 ENSMUSP00000099509 TRANSLATION protein_coding - CCDS16695.1 1 2136.0 15.0 34.905 31.2 791.7 0.0 -4,-5 1.0 82 22.0 PRINCIPAL:1 ENSMUSG00000003660 Snrnp200 ENSMUST00000140868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003660 Snrnp200 ENSMUST00000143481 - NO_TRANSLATION retained_intron ENSMUSG00000027273 Snap25 ENSMUST00000110098 ENSMUSP00000105725 TRANSLATION protein_coding - CCDS71153.1 3 206.0 0.0 4.5 0.0 74.7 0.0 -4,-5 0.5773 15 12.0 MINOR ENSMUSG00000027273 Snap25 ENSMUST00000028727 ENSMUSP00000028727 TRANSLATION protein_coding - CCDS16793.1 1 206.0 0.0 4.5 36.2 74.7 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000027273 Snap25 ENSMUST00000125486 - NO_TRANSLATION retained_intron ENSMUSG00000016253 Nelfcd ENSMUST00000137986 - NO_TRANSLATION retained_intron ENSMUSG00000016253 Nelfcd ENSMUST00000129716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016253 Nelfcd ENSMUST00000109075 ENSMUSP00000104703 TRANSLATION protein_coding - CCDS38358.1 1 591.0 0.0 11.73 5.6 945.6 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000016253 Nelfcd ENSMUST00000016397 ENSMUSP00000016397 TRANSLATION protein_coding - - 1 607.0 0.0 11.23 0.0 922.2 0.0 -4,-5 0.0939 13 9.594 MINOR ENSMUSG00000016253 Nelfcd ENSMUST00000139390 - NO_TRANSLATION retained_intron ENSMUSG00000016253 Nelfcd ENSMUST00000143683 - NO_TRANSLATION retained_intron ENSMUSG00000000392 Fap ENSMUST00000174234 ENSMUSP00000133792 TRANSLATION protein_coding - - 5 736.0 3.0 19.05 1.0 537.4 0.0 -1,-5 0.133 13 9.5 MINOR ENSMUSG00000000392 Fap ENSMUST00000102732 ENSMUSP00000099793 TRANSLATION protein_coding - CCDS16067.1 1 761.0 3.0 19.8 18.9 547.4 0.0 -1,-5 1.0 14 14.564 PRINCIPAL:4 ENSMUSG00000000392 Fap ENSMUST00000174448 ENSMUSP00000134386 TRANSLATION protein_coding - - 5 756.0 3.0 19.8 21.1 547.4 0.0 0,-5 0.8759 14 15.0 ALTERNATIVE:1 ENSMUSG00000000392 Fap ENSMUST00000173745 ENSMUSP00000134305 TRANSLATION protein_coding stop - 3 63.0 0.0 1.75 0.0 39.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000392 Fap ENSMUST00000000402 ENSMUSP00000000402 TRANSLATION protein_coding - - 5 728.0 3.0 19.05 0.0 547.4 0.0 -1,-5 0.083 14 9.5 MINOR ENSMUSG00000000392 Fap ENSMUST00000172676 - NO_TRANSLATION retained_intron ENSMUSG00000000392 Fap ENSMUST00000128139 ENSMUSP00000134074 TRANSLATION nonsense_mediated_decay start - 5 47.0 0.0 1.5 0.0 24.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000392 Fap ENSMUST00000136297 - NO_TRANSLATION retained_intron ENSMUSG00000000392 Fap ENSMUST00000152085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027072 Prg3 ENSMUST00000028466 ENSMUSP00000028466 TRANSLATION protein_coding - CCDS16199.1 1 222.0 0.0 3.1 2.2 42.7 0.0 4,-1 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000027072 Prg3 ENSMUST00000135939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026723 Trdmt1 ENSMUST00000028055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026723 Trdmt1 ENSMUST00000124488 ENSMUSP00000114572 TRANSLATION protein_coding - CCDS15695.1 1 415.0 20.0 6.9 0.0 0.0 0.0 -4,-5 0.8878 5 12.0 PRINCIPAL:1 ENSMUSG00000026723 Trdmt1 ENSMUST00000144957 ENSMUSP00000141758 TRANSLATION nonsense_mediated_decay - - 5 84.0 16.0 2.5 0.0 0.0 0.0 -4,-5 0.0101 - -2.0 MINOR ENSMUSG00000026989 Dapl1 ENSMUST00000144415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026989 Dapl1 ENSMUST00000028369 ENSMUSP00000028369 TRANSLATION protein_coding - CCDS16053.1 1 107.0 0.0 0.0 12.5 84.7 0.0 -4,-6 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000027678 Ncoa3 ENSMUST00000153507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027678 Ncoa3 ENSMUST00000139394 - NO_TRANSLATION retained_intron ENSMUSG00000027678 Ncoa3 ENSMUST00000088095 ENSMUSP00000085416 TRANSLATION protein_coding - CCDS38333.1 1 1403.0 0.0 4.05 0.0 653.0 0.0 -4,-5 1.0 29 8.0 PRINCIPAL:2 ENSMUSG00000027678 Ncoa3 ENSMUST00000139658 - NO_TRANSLATION retained_intron ENSMUSG00000027678 Ncoa3 ENSMUST00000109252 ENSMUSP00000104875 TRANSLATION protein_coding - - 5 1402.0 0.0 4.05 0.0 653.0 0.0 -4,-5 0.6991 29 8.0 ALTERNATIVE:2 ENSMUSG00000051413 Plagl2 ENSMUST00000109795 ENSMUSP00000105419 TRANSLATION protein_coding - CCDS16908.1 1 496.0 24.0 0.5 15.0 62.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000051413 Plagl2 ENSMUST00000056924 ENSMUSP00000055709 TRANSLATION protein_coding - CCDS16908.1 1 496.0 24.0 0.5 15.0 62.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000058594 Fbh1 ENSMUST00000123723 - NO_TRANSLATION retained_intron ENSMUSG00000058594 Fbh1 ENSMUST00000136633 - NO_TRANSLATION retained_intron ENSMUSG00000058594 Fbh1 ENSMUST00000192171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058594 Fbh1 ENSMUST00000151402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058594 Fbh1 ENSMUST00000071564 ENSMUSP00000071495 TRANSLATION protein_coding - CCDS15688.1 1 1042.0 9.0 0.0 0.0 36.9 0.0 -4,0 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000058594 Fbh1 ENSMUST00000139292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058594 Fbh1 ENSMUST00000155604 - NO_TRANSLATION retained_intron ENSMUSG00000058594 Fbh1 ENSMUST00000126543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058594 Fbh1 ENSMUST00000131893 ENSMUSP00000116392 TRANSLATION protein_coding start/stop - 3 297.0 1.0 0.0 0.0 0.0 0.0 -4,-5 0.0019 1 -2.0 MINOR ENSMUSG00000058594 Fbh1 ENSMUST00000123717 - NO_TRANSLATION retained_intron ENSMUSG00000026848 Tor1b ENSMUST00000133544 - NO_TRANSLATION retained_intron ENSMUSG00000026848 Tor1b ENSMUST00000195010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026848 Tor1b ENSMUST00000028199 ENSMUSP00000028199 TRANSLATION protein_coding - CCDS15890.1 1 336.0 12.0 5.95 6.2 167.6 0.0 3,-2 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000026848 Tor1b ENSMUST00000135507 ENSMUSP00000117888 TRANSLATION nonsense_mediated_decay - - 3 179.0 11.0 2.2 0.0 141.5 0.0 3,-2 0.0006 1 -2.0 MINOR ENSMUSG00000026848 Tor1b ENSMUST00000156711 ENSMUSP00000120415 TRANSLATION nonsense_mediated_decay start - 1 122.0 11.0 2.2 0.0 130.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026848 Tor1b ENSMUST00000132514 ENSMUSP00000117612 TRANSLATION nonsense_mediated_decay start - 5 68.0 10.0 1.0 0.0 59.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026848 Tor1b ENSMUST00000155213 - NO_TRANSLATION retained_intron ENSMUSG00000027187 Cat ENSMUST00000111168 ENSMUSP00000106798 TRANSLATION protein_coding - - 3 176.0 4.0 3.9 0.0 52.2 0.0 -4,-5 0.0003 11 4.626 MINOR ENSMUSG00000027187 Cat ENSMUST00000028610 ENSMUSP00000028610 TRANSLATION protein_coding - CCDS16478.1 1 527.0 41.0 11.73 28.9 67.7 0.0 -4,-5 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000101645 Gm28635 ENSMUST00000189772 ENSMUSP00000141166 TRANSLATION protein_coding,RT - CCDS16186.1 5 938.0 0.0 7.035 12.5 82.1 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000074594 Wfdc9 ENSMUST00000109335 ENSMUSP00000104959 TRANSLATION protein_coding - CCDS50796.1 5 83.0 0.0 1.33 2.9 0.0 0.0 1,-3 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000074594 Wfdc9 ENSMUST00000099095 ENSMUSP00000096693 TRANSLATION protein_coding - CCDS50796.1 5 83.0 0.0 1.33 2.9 0.0 0.0 1,-3 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000027435 Cd93 ENSMUST00000099269 ENSMUSP00000096876 TRANSLATION protein_coding - CCDS16839.1 1 644.0 19.0 0.0 0.1 139.4 0.0 3,-2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000008333 Snrpb2 ENSMUST00000126763 ENSMUSP00000120137 TRANSLATION protein_coding stop - 3 143.0 0.0 2.61 0.0 37.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000008333 Snrpb2 ENSMUST00000134091 - NO_TRANSLATION retained_intron ENSMUSG00000008333 Snrpb2 ENSMUST00000008477 ENSMUSP00000008477 TRANSLATION protein_coding - CCDS16808.1 1 225.0 0.0 4.61 34.7 89.4 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000008333 Snrpb2 ENSMUST00000127760 - NO_TRANSLATION retained_intron ENSMUSG00000008333 Snrpb2 ENSMUST00000139114 - NO_TRANSLATION retained_intron ENSMUSG00000074576 Mocs3 ENSMUST00000099071 ENSMUSP00000096670 TRANSLATION protein_coding - CCDS50802.1 - 460.0 22.0 0.4 7.3 256.3 0.0 -4,-5 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000075065 Or4b1 ENSMUST00000215578 ENSMUSP00000151124 TRANSLATION protein_coding - CCDS16408.1 5 304.0 0.0 1.0 7.3 183.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075065 Or4b1 ENSMUST00000213946 ENSMUSP00000150124 TRANSLATION protein_coding - CCDS16408.1 5 304.0 0.0 1.0 7.3 183.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075065 Or4b1 ENSMUST00000215975 ENSMUSP00000149396 TRANSLATION protein_coding - CCDS16408.1 5 304.0 0.0 1.0 7.3 183.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075065 Or4b1 ENSMUST00000216354 ENSMUSP00000149941 TRANSLATION protein_coding - CCDS16408.1 5 304.0 0.0 1.0 7.3 183.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075065 Or4b1 ENSMUST00000217139 ENSMUSP00000150561 TRANSLATION protein_coding - CCDS16408.1 5 304.0 0.0 1.0 7.3 183.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075065 Or4b1 ENSMUST00000099754 ENSMUSP00000097343 TRANSLATION protein_coding - CCDS16408.1 - 304.0 0.0 1.0 7.3 183.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000080713 Or5d44 ENSMUST00000213348 ENSMUSP00000153754 TRANSLATION protein_coding - - 5 320.0 0.0 1.0 0.9 161.7 0.0 -4,-7 0.8006 - 12.0 PRINCIPAL:1 ENSMUSG00000080713 Or5d44 ENSMUST00000214955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027215 Cd82 ENSMUST00000028644 ENSMUSP00000028644 TRANSLATION protein_coding - CCDS16454.1 1 266.0 0.0 6.082 10.3 179.7 7.0 -1,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000027215 Cd82 ENSMUST00000123565 ENSMUSP00000114762 TRANSLATION protein_coding stop - 3 179.0 0.0 4.45 0.0 136.9 6.0 -1,-5 0.0034 4 -2.0 MINOR ENSMUSG00000027215 Cd82 ENSMUST00000150508 ENSMUSP00000120183 TRANSLATION protein_coding stop - 5 146.0 0.0 3.85 0.0 107.1 6.0 -1,-5 0.0021 2 -2.0 MINOR ENSMUSG00000027215 Cd82 ENSMUST00000116457 ENSMUSP00000112158 TRANSLATION protein_coding - CCDS16454.1 1 266.0 0.0 6.082 10.3 179.7 7.0 -1,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000027215 Cd82 ENSMUST00000111257 ENSMUSP00000106888 TRANSLATION protein_coding - CCDS16454.1 5 266.0 0.0 6.082 10.3 179.7 7.0 -1,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000027215 Cd82 ENSMUST00000126772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027215 Cd82 ENSMUST00000099696 ENSMUSP00000097287 TRANSLATION protein_coding - CCDS16454.1 1 266.0 0.0 6.082 10.3 179.7 7.0 -1,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000027215 Cd82 ENSMUST00000124804 ENSMUSP00000115349 TRANSLATION protein_coding stop - 3 21.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000027215 Cd82 ENSMUST00000144168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027215 Cd82 ENSMUST00000145553 ENSMUSP00000115310 TRANSLATION protein_coding stop - 5 146.0 0.0 3.85 0.0 107.1 6.0 -1,-5 0.0021 2 -2.0 MINOR ENSMUSG00000027215 Cd82 ENSMUST00000111256 ENSMUSP00000106887 TRANSLATION protein_coding stop - 5 88.0 0.0 2.5 0.0 63.7 4.0 -1,-5 0.0021 - -2.0 MINOR ENSMUSG00000035000 Dpp4 ENSMUST00000150979 - NO_TRANSLATION retained_intron ENSMUSG00000035000 Dpp4 ENSMUST00000047812 ENSMUSP00000044050 TRANSLATION protein_coding - CCDS16065.1 1 760.0 3.0 19.75 9.1 559.6 0.0 -1,-5 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000035000 Dpp4 ENSMUST00000151818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035000 Dpp4 ENSMUST00000129738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035000 Dpp4 ENSMUST00000156871 - NO_TRANSLATION retained_intron ENSMUSG00000035000 Dpp4 ENSMUST00000149306 - NO_TRANSLATION retained_intron ENSMUSG00000025314 Ptprj ENSMUST00000111495 ENSMUSP00000107121 TRANSLATION protein_coding - CCDS50629.1 1 1299.0 13.0 7.3 0.0 363.5 2.0 -4,-7 0.6884 15 14.0 ALTERNATIVE:2 ENSMUSG00000025314 Ptprj ENSMUST00000168621 ENSMUSP00000129592 TRANSLATION protein_coding - - 1 1238.0 13.0 7.3 0.0 363.5 2.0 -2,-3 1.0 15 14.0 PRINCIPAL:2 ENSMUSG00000025314 Ptprj ENSMUST00000129323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025314 Ptprj ENSMUST00000111493 ENSMUSP00000107119 TRANSLATION protein_coding - - 5 1164.0 13.0 7.3 0.0 334.0 2.0 -4,-5 0.1144 15 13.75 MINOR ENSMUSG00000074968 Ano3 ENSMUST00000111019 - NO_TRANSLATION retained_intron ENSMUSG00000074968 Ano3 ENSMUST00000099623 ENSMUSP00000097219 TRANSLATION protein_coding - CCDS50658.1 5 981.0 0.0 14.09775 7.3 774.0 7.0 -4,-7 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000074968 Ano3 ENSMUST00000140777 ENSMUSP00000122387 TRANSLATION protein_coding start - 3 181.0 0.0 2.99 0.0 117.0 2.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000109487 Or4k48 ENSMUST00000119566 ENSMUSP00000147197 TRANSLATION protein_coding - CCDS16531.1 - 312.0 0.0 1.0 8.3 161.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109487 Or4k48 ENSMUST00000208284 ENSMUSP00000146343 TRANSLATION protein_coding - CCDS16531.1 5 312.0 0.0 1.0 8.3 161.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027340 Slc23a2 ENSMUST00000133407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027340 Slc23a2 ENSMUST00000128899 ENSMUSP00000116640 TRANSLATION protein_coding stop - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027340 Slc23a2 ENSMUST00000154009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027340 Slc23a2 ENSMUST00000127724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027340 Slc23a2 ENSMUST00000028815 ENSMUSP00000028815 TRANSLATION protein_coding - CCDS16769.1 1 648.0 0.0 8.56 15.6 303.4 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000027340 Slc23a2 ENSMUST00000137910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027340 Slc23a2 ENSMUST00000148749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075199 Or8u8 ENSMUST00000099905 ENSMUSP00000097489 TRANSLATION protein_coding - CCDS16243.1 - 319.0 0.0 1.0 10.7 188.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075199 Or8u8 ENSMUST00000215138 ENSMUSP00000150060 TRANSLATION protein_coding - CCDS16243.1 5 319.0 0.0 1.0 10.7 188.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070476 Fam217b ENSMUST00000129003 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070476 Fam217b ENSMUST00000094251 ENSMUSP00000091805 TRANSLATION protein_coding - CCDS38372.1 1 387.0 0.0 0.0 2.1 294.1 0.0 -4,-7 1.0 8 7.0 PRINCIPAL:1 ENSMUSG00000092356 Gm20532 ENSMUST00000174066 ENSMUSP00000133799 TRANSLATION nonsense_mediated_decay,RT - - 5 103.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.6301 - -2.0 PRINCIPAL:1 ENSMUSG00000047841 Fndc11 ENSMUST00000050026 ENSMUSP00000056320 TRANSLATION protein_coding - CCDS17205.1 1 326.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.4442 - 0.0 MINOR ENSMUSG00000047841 Fndc11 ENSMUST00000108835 ENSMUSP00000104463 TRANSLATION protein_coding - - 2 332.0 0.0 0.0 5.1 0.0 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000061689 Dlgap4 ENSMUST00000099145 ENSMUSP00000096749 TRANSLATION protein_coding - CCDS38299.1 1 453.0 9.0 3.128 17.8 499.3 0.0 -4,-6 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000061689 Dlgap4 ENSMUST00000109567 ENSMUSP00000105195 TRANSLATION protein_coding - CCDS71171.1 5 989.0 9.0 3.128 9.0 441.4 0.0 -4,-6 0.51 22 16.43 MINOR ENSMUSG00000061689 Dlgap4 ENSMUST00000000094 ENSMUSP00000000094 TRANSLATION protein_coding - - 5 244.0 9.0 3.128 0.0 291.7 0.0 -4,-6 0.0186 12 12.0 MINOR ENSMUSG00000061689 Dlgap4 ENSMUST00000123730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061689 Dlgap4 ENSMUST00000127944 - NO_TRANSLATION retained_intron ENSMUSG00000061689 Dlgap4 ENSMUST00000109566 ENSMUSP00000105194 TRANSLATION protein_coding - CCDS38300.1 1 285.0 9.0 3.128 5.7 435.3 0.0 -4,-5 0.297 10 15.28 MINOR ENSMUSG00000061689 Dlgap4 ENSMUST00000109568 ENSMUSP00000105196 TRANSLATION protein_coding - CCDS71172.1 1 975.0 9.0 3.128 6.5 499.3 0.0 -4,-6 0.5102 22 19.308 MINOR ENSMUSG00000061689 Dlgap4 ENSMUST00000131157 ENSMUSP00000134941 TRANSLATION protein_coding stop - 5 109.0 0.0 2.528 0.0 194.4 0.0 -4,-5 0.0002 5 -2.0 MINOR ENSMUSG00000061689 Dlgap4 ENSMUST00000070782 ENSMUSP00000068745 TRANSLATION protein_coding - CCDS71171.1 1 989.0 9.0 3.128 9.0 441.4 0.0 -4,-6 0.51 22 16.43 MINOR ENSMUSG00000061689 Dlgap4 ENSMUST00000171030 ENSMUSP00000129756 TRANSLATION protein_coding stop - 5 266.0 9.0 3.128 0.0 381.9 0.0 -4,-5 0.0195 10 -2.0 MINOR ENSMUSG00000061689 Dlgap4 ENSMUST00000137356 ENSMUSP00000135698 TRANSLATION protein_coding stop - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000061689 Dlgap4 ENSMUST00000146412 ENSMUSP00000135156 TRANSLATION protein_coding stop - 5 122.0 9.0 0.6 0.0 107.5 0.0 -4,-5 0.0005 4 -2.0 MINOR ENSMUSG00000061689 Dlgap4 ENSMUST00000169464 ENSMUSP00000126980 TRANSLATION protein_coding - CCDS16968.1 5 992.0 9.0 3.128 10.1 499.3 0.0 -4,-6 0.6824 22 20.168 MINOR ENSMUSG00000061689 Dlgap4 ENSMUST00000177013 ENSMUSP00000135409 TRANSLATION protein_coding stop - 3 68.0 0.0 0.0 0.0 19.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000074596 Spint3 ENSMUST00000099097 ENSMUSP00000096695 TRANSLATION protein_coding - CCDS50794.1 1 88.0 0.0 1.75 0.1 71.9 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026650 Meig1 ENSMUST00000115084 ENSMUSP00000110736 TRANSLATION protein_coding - CCDS38038.1 2 88.0 0.0 2.25 15.1 134.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000026650 Meig1 ENSMUST00000064685 ENSMUSP00000070310 TRANSLATION protein_coding - CCDS38038.1 1 88.0 0.0 2.25 15.1 134.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000026650 Meig1 ENSMUST00000115083 ENSMUSP00000110735 TRANSLATION protein_coding - CCDS38038.1 2 88.0 0.0 2.25 15.1 134.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000026650 Meig1 ENSMUST00000115082 ENSMUSP00000110734 TRANSLATION protein_coding - CCDS38038.1 1 88.0 0.0 2.25 15.1 134.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000026650 Meig1 ENSMUST00000115081 ENSMUSP00000110733 TRANSLATION protein_coding - CCDS38038.1 5 88.0 0.0 2.25 15.1 134.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000026650 Meig1 ENSMUST00000144584 ENSMUSP00000123118 TRANSLATION protein_coding stop - 3 65.0 0.0 1.5 0.0 92.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039021 Ttc16 ENSMUST00000066478 ENSMUSP00000068977 TRANSLATION protein_coding - CCDS71030.1 1 767.0 0.0 9.3 0.0 14.1 0.0 -4,-7 0.3195 - 8.0 ALTERNATIVE:2 ENSMUSG00000039021 Ttc16 ENSMUST00000161430 ENSMUSP00000124031 TRANSLATION protein_coding - CCDS15930.2 1 824.0 0.0 9.3 0.0 14.1 0.0 -4,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000039021 Ttc16 ENSMUST00000125891 ENSMUSP00000125210 TRANSLATION nonsense_mediated_decay - - 2 119.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000039021 Ttc16 ENSMUST00000161950 ENSMUSP00000123927 TRANSLATION protein_coding - CCDS71030.1 1 767.0 0.0 9.3 0.0 14.1 0.0 -4,-7 0.3195 - 8.0 ALTERNATIVE:2 ENSMUSG00000039021 Ttc16 ENSMUST00000091059 ENSMUSP00000088585 TRANSLATION protein_coding - CCDS79777.1 1 709.0 0.0 9.3 0.0 14.1 0.0 -4,-2 0.343 - 8.0 ALTERNATIVE:2 ENSMUSG00000039021 Ttc16 ENSMUST00000161089 ENSMUSP00000124915 TRANSLATION protein_coding - CCDS71030.1 1 767.0 0.0 9.3 0.0 14.1 0.0 -4,-7 0.3195 - 8.0 ALTERNATIVE:2 ENSMUSG00000039021 Ttc16 ENSMUST00000161958 ENSMUSP00000124054 TRANSLATION protein_coding stop - 3 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000039021 Ttc16 ENSMUST00000123674 - NO_TRANSLATION retained_intron ENSMUSG00000045967 Gpr158 ENSMUST00000155760 - NO_TRANSLATION retained_intron ENSMUSG00000045967 Gpr158 ENSMUST00000055946 ENSMUSP00000049708 TRANSLATION protein_coding - CCDS15722.1 1 1200.0 0.0 1.73 5.2 125.3 0.0 3,-2 1.0 25 14.0 PRINCIPAL:1 ENSMUSG00000038685 Rtel1 ENSMUST00000147266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038685 Rtel1 ENSMUST00000144648 - NO_TRANSLATION retained_intron ENSMUSG00000038685 Rtel1 ENSMUST00000108815 ENSMUSP00000104443 TRANSLATION protein_coding - CCDS50852.1 1 1164.0 11.0 6.3605 0.0 374.6 0.0 -4,-6 0.4974 4 14.0 ALTERNATIVE:2 ENSMUSG00000038685 Rtel1 ENSMUST00000139601 - NO_TRANSLATION retained_intron ENSMUSG00000038685 Rtel1 ENSMUST00000153112 ENSMUSP00000118810 TRANSLATION protein_coding stop - 3 162.0 11.0 1.2285 0.0 51.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038685 Rtel1 ENSMUST00000125233 - NO_TRANSLATION retained_intron ENSMUSG00000038685 Rtel1 ENSMUST00000130772 - NO_TRANSLATION retained_intron ENSMUSG00000038685 Rtel1 ENSMUST00000130935 - NO_TRANSLATION retained_intron ENSMUSG00000038685 Rtel1 ENSMUST00000126842 - NO_TRANSLATION retained_intron ENSMUSG00000038685 Rtel1 ENSMUST00000124149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038685 Rtel1 ENSMUST00000137700 ENSMUSP00000121400 TRANSLATION protein_coding start - 3 101.0 8.0 0.0 0.0 0.0 0.0 -4,-6 0.0005 - -2.0 MINOR ENSMUSG00000038685 Rtel1 ENSMUST00000098971 ENSMUSP00000096571 TRANSLATION protein_coding - CCDS50851.1 1 1170.0 11.0 6.3605 0.0 374.6 0.0 -4,-6 0.5154 4 14.0 ALTERNATIVE:2 ENSMUSG00000038685 Rtel1 ENSMUST00000108814 ENSMUSP00000104442 TRANSLATION protein_coding - CCDS50849.1 1 1203.0 11.0 6.3605 0.0 374.6 0.0 -4,-6 0.6516 4 14.0 ALTERNATIVE:2 ENSMUSG00000038685 Rtel1 ENSMUST00000134651 ENSMUSP00000123039 TRANSLATION protein_coding start - 2 97.0 8.0 0.0 0.0 0.0 0.0 -4,-6 0.0005 - -2.0 MINOR ENSMUSG00000038685 Rtel1 ENSMUST00000133856 ENSMUSP00000120162 TRANSLATION protein_coding start - 3 88.0 8.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000038685 Rtel1 ENSMUST00000148252 ENSMUSP00000116159 TRANSLATION protein_coding start - 1 992.0 0.0 5.082 0.0 298.4 0.0 -4,-5 0.011 3 -2.0 MINOR ENSMUSG00000038685 Rtel1 ENSMUST00000139608 - NO_TRANSLATION retained_intron ENSMUSG00000038685 Rtel1 ENSMUST00000184751 ENSMUSP00000138971 TRANSLATION nonsense_mediated_decay start - 3 52.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038685 Rtel1 ENSMUST00000146273 - NO_TRANSLATION retained_intron ENSMUSG00000038685 Rtel1 ENSMUST00000054622 ENSMUSP00000053120 TRANSLATION protein_coding - CCDS17208.1 1 1209.0 11.0 6.3605 0.0 374.6 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000038685 Rtel1 ENSMUST00000048608 ENSMUSP00000043563 TRANSLATION protein_coding - CCDS50850.1 1 1128.0 11.0 6.3605 0.0 374.6 0.0 -4,-6 0.459 4 14.0 ALTERNATIVE:2 ENSMUSG00000009216 Fam163b ENSMUST00000151224 ENSMUSP00000127556 TRANSLATION protein_coding - CCDS38087.1 1 167.0 0.0 1.0 16.4 212.5 0.0 -1,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000037761 Actr5 ENSMUST00000045644 ENSMUSP00000046658 TRANSLATION protein_coding - CCDS38310.1 1 608.0 19.0 3.94 1.7 152.1 0.0 -4,-7 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000037761 Actr5 ENSMUST00000125390 - NO_TRANSLATION retained_intron ENSMUSG00000037761 Actr5 ENSMUST00000183586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037761 Actr5 ENSMUST00000183731 ENSMUSP00000139110 TRANSLATION nonsense_mediated_decay - - 1 401.0 13.0 2.52 0.0 74.5 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000037761 Actr5 ENSMUST00000142531 - NO_TRANSLATION retained_intron ENSMUSG00000005232 G6pc2 ENSMUST00000129288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005232 G6pc2 ENSMUST00000151953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005232 G6pc2 ENSMUST00000005364 ENSMUSP00000005364 TRANSLATION protein_coding - CCDS16089.1 1 355.0 3.0 5.33 22.3 55.2 7.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000005232 G6pc2 ENSMUST00000112317 ENSMUSP00000107936 TRANSLATION protein_coding - CCDS71066.1 1 154.0 1.0 3.0 5.8 32.2 2.0 -4,-5 0.1385 - 6.735 MINOR ENSMUSG00000075133 Or5d41 ENSMUST00000099831 ENSMUSP00000097419 TRANSLATION protein_coding - CCDS16329.1 - 316.0 0.0 1.0 7.8 167.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075133 Or5d41 ENSMUST00000214386 ENSMUSP00000150142 TRANSLATION protein_coding - CCDS16329.1 5 316.0 0.0 1.0 7.8 167.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026739 Bmi1 ENSMUST00000028071 ENSMUSP00000028071 TRANSLATION protein_coding - CCDS15711.1 1 324.0 8.0 6.075 23.0 121.4 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000026739 Bmi1 ENSMUST00000156284 ENSMUSP00000118730 TRANSLATION protein_coding stop - 3 197.0 8.0 5.575 0.0 82.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026739 Bmi1 ENSMUST00000147365 ENSMUSP00000118273 TRANSLATION protein_coding stop - 5 75.0 8.0 2.0 0.0 44.0 0.0 -4,-7 0.0005 1 -2.0 MINOR ENSMUSG00000026739 Bmi1 ENSMUST00000150834 ENSMUSP00000119331 TRANSLATION protein_coding stop - 5 159.0 8.0 4.495 0.0 44.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026739 Bmi1 ENSMUST00000134734 ENSMUSP00000121876 TRANSLATION protein_coding stop - 5 105.0 8.0 3.33 0.0 44.0 0.0 -4,-7 0.0005 1 -2.0 MINOR ENSMUSG00000026739 Bmi1 ENSMUST00000051929 ENSMUSP00000110300 TRANSLATION protein_coding - CCDS15711.1 1 324.0 8.0 6.075 23.0 121.4 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000026739 Bmi1 ENSMUST00000132014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033156 Cst10 ENSMUST00000109938 ENSMUSP00000105564 TRANSLATION protein_coding - CCDS16853.1 2 148.0 0.0 2.75 0.3 86.9 0.0 0,-3 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000033156 Cst10 ENSMUST00000047008 ENSMUSP00000043520 TRANSLATION protein_coding - CCDS16853.1 1 148.0 0.0 2.75 0.3 86.9 0.0 0,-3 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000033156 Cst10 ENSMUST00000109939 ENSMUSP00000105565 TRANSLATION protein_coding - - 2 110.0 0.0 1.75 0.0 31.6 0.0 0,-3 0.0005 5 6.0 MINOR ENSMUSG00000061809 Tbpl2 ENSMUST00000080453 ENSMUSP00000079309 TRANSLATION protein_coding - CCDS15732.1 1 350.0 0.0 4.5 0.3 210.4 0.0 -4,-6 0.9861 - 11.82 PRINCIPAL:1 ENSMUSG00000061809 Tbpl2 ENSMUST00000153338 ENSMUSP00000120310 TRANSLATION protein_coding start - 1 348.0 0.0 4.5 0.3 213.4 0.0 -4,-5 0.2517 - -2.0 MINOR ENSMUSG00000060131 Atp8b4 ENSMUST00000040149 ENSMUSP00000047302 TRANSLATION protein_coding - CCDS50698.1 1 1194.0 3.0 18.272 9.2 448.3 13.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000060131 Atp8b4 ENSMUST00000134977 - NO_TRANSLATION retained_intron ENSMUSG00000060131 Atp8b4 ENSMUST00000129187 ENSMUSP00000118651 TRANSLATION protein_coding stop - 1 426.0 2.0 9.232 0.0 125.3 7.0 -4,-6 0.0043 - -2.0 MINOR ENSMUSG00000060131 Atp8b4 ENSMUST00000147517 ENSMUSP00000114252 TRANSLATION nonsense_mediated_decay - - 1 435.0 2.0 9.2 0.0 125.2 7.0 -4,-6 0.0043 - -2.0 MINOR ENSMUSG00000060131 Atp8b4 ENSMUST00000040128 ENSMUSP00000046444 TRANSLATION protein_coding - CCDS50698.1 5 1194.0 3.0 18.272 9.2 448.3 13.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000075187 Or8j3b ENSMUST00000217435 ENSMUSP00000150623 TRANSLATION protein_coding - CCDS16253.1 5 315.0 0.0 1.0 10.3 158.3 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075187 Or8j3b ENSMUST00000099892 ENSMUSP00000097477 TRANSLATION protein_coding - CCDS16253.1 - 315.0 0.0 1.0 10.3 158.3 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027365 Trpm7 ENSMUST00000125327 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027365 Trpm7 ENSMUST00000152615 - NO_TRANSLATION retained_intron ENSMUSG00000027365 Trpm7 ENSMUST00000135733 - NO_TRANSLATION retained_intron ENSMUSG00000027365 Trpm7 ENSMUST00000142334 - NO_TRANSLATION retained_intron ENSMUSG00000027365 Trpm7 ENSMUST00000127277 - NO_TRANSLATION retained_intron ENSMUSG00000027365 Trpm7 ENSMUST00000132003 - NO_TRANSLATION retained_intron ENSMUSG00000027365 Trpm7 ENSMUST00000028843 ENSMUSP00000028843 TRANSLATION protein_coding - CCDS50700.1 1 1862.0 18.0 19.4725 5.5 261.6 4.0 -4,-5 0.9995 8 16.0 ALTERNATIVE:1 ENSMUSG00000027365 Trpm7 ENSMUST00000134408 - NO_TRANSLATION retained_intron ENSMUSG00000027365 Trpm7 ENSMUST00000103224 ENSMUSP00000099513 TRANSLATION protein_coding - CCDS16689.1 1 1863.0 18.0 19.4725 5.5 261.6 4.0 -4,-5 1.0 8 16.0 PRINCIPAL:4 ENSMUSG00000027365 Trpm7 ENSMUST00000136964 ENSMUSP00000119232 TRANSLATION protein_coding start/stop - 3 268.0 18.0 3.35 0.0 125.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000027365 Trpm7 ENSMUST00000155675 - NO_TRANSLATION retained_intron ENSMUSG00000027649 Ctnnbl1 ENSMUST00000029178 ENSMUSP00000029178 TRANSLATION protein_coding - CCDS16982.1 1 563.0 0.0 13.1 24.5 138.3 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000027649 Ctnnbl1 ENSMUST00000129842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027649 Ctnnbl1 ENSMUST00000156300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027649 Ctnnbl1 ENSMUST00000155479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027380 Acoxl ENSMUST00000126410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027380 Acoxl ENSMUST00000110344 ENSMUSP00000105973 TRANSLATION protein_coding - - 1 352.0 20.0 4.8 0.0 100.7 0.0 -4,-7 0.0007 1 1.242 MINOR ENSMUSG00000027380 Acoxl ENSMUST00000028859 ENSMUSP00000028859 TRANSLATION protein_coding - CCDS16711.1 1 632.0 31.0 9.56 0.1 180.0 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000056115 Tas2r134 ENSMUST00000070028 ENSMUSP00000064657 TRANSLATION protein_coding - CCDS16029.1 - 298.0 0.0 0.0 0.0 247.8 0.0 1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000002733 Plekha3 ENSMUST00000111920 ENSMUSP00000107551 TRANSLATION protein_coding - CCDS16162.1 1 297.0 11.0 2.632 17.1 48.6 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000002733 Plekha3 ENSMUST00000125119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027323 Rad51 ENSMUST00000140939 ENSMUSP00000119444 TRANSLATION protein_coding stop - 5 178.0 6.0 2.43 0.0 76.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027323 Rad51 ENSMUST00000154683 - NO_TRANSLATION retained_intron ENSMUSG00000027323 Rad51 ENSMUST00000141389 - NO_TRANSLATION retained_intron ENSMUSG00000027323 Rad51 ENSMUST00000151406 ENSMUSP00000117939 TRANSLATION protein_coding start - 3 237.0 7.0 5.16 0.0 304.5 0.0 -4,-5 0.0011 2 -2.0 MINOR ENSMUSG00000027323 Rad51 ENSMUST00000152327 ENSMUSP00000119101 TRANSLATION nonsense_mediated_decay - - 1 220.0 7.0 5.76 0.0 214.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027323 Rad51 ENSMUST00000143934 - NO_TRANSLATION retained_intron ENSMUSG00000027323 Rad51 ENSMUST00000028795 ENSMUSP00000028795 TRANSLATION protein_coding - CCDS16590.1 1 339.0 7.0 9.09 31.2 430.7 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000027323 Rad51 ENSMUST00000110828 - NO_TRANSLATION retained_intron ENSMUSG00000041358 Nutm1 ENSMUST00000043970 ENSMUSP00000048263 TRANSLATION protein_coding - CCDS16549.1 1 1126.0 0.0 1.5 0.0 818.0 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027254 Map1a ENSMUST00000133283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027254 Map1a ENSMUST00000110639 ENSMUSP00000106269 TRANSLATION protein_coding - CCDS50685.1 5 2776.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.5283 93 6.0 ALTERNATIVE:2 ENSMUSG00000027254 Map1a ENSMUST00000094639 ENSMUSP00000092223 TRANSLATION protein_coding - CCDS38215.1 5 3014.0 0.0 2.0 0.0 0.0 0.0 -4,-5 1.0 94 6.0 PRINCIPAL:2 ENSMUSG00000027254 Map1a ENSMUST00000131901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026718 Stam ENSMUST00000128777 - NO_TRANSLATION retained_intron ENSMUSG00000026718 Stam ENSMUST00000140694 - NO_TRANSLATION retained_intron ENSMUSG00000026718 Stam ENSMUST00000193636 ENSMUSP00000141207 TRANSLATION nonsense_mediated_decay - - 5 50.0 0.0 1.25 0.0 33.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026718 Stam ENSMUST00000028050 ENSMUSP00000028050 TRANSLATION protein_coding - - 1 462.0 0.0 8.73 3.3 237.5 0.0 -4,-5 1.0 8 9.0 PRINCIPAL:2 ENSMUSG00000026718 Stam ENSMUST00000131734 - NO_TRANSLATION retained_intron ENSMUSG00000026718 Stam ENSMUST00000138989 ENSMUSP00000121228 TRANSLATION protein_coding stop - 3 207.0 0.0 4.029 0.0 176.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026718 Stam ENSMUST00000144944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026718 Stam ENSMUST00000156901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026718 Stam ENSMUST00000102960 ENSMUSP00000100025 TRANSLATION protein_coding - CCDS15698.1 1 548.0 0.0 8.73 0.4 237.5 0.0 -4,-5 0.3575 8 8.0 ALTERNATIVE:2 ENSMUSG00000000247 Lhx2 ENSMUST00000155964 ENSMUSP00000121462 TRANSLATION protein_coding stop - 2 108.0 14.0 1.8 0.0 101.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000247 Lhx2 ENSMUST00000176229 ENSMUSP00000135402 TRANSLATION nonsense_mediated_decay - - 3 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000247 Lhx2 ENSMUST00000133661 ENSMUSP00000115179 TRANSLATION protein_coding stop - 2 192.0 15.0 2.0 0.0 119.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000247 Lhx2 ENSMUST00000143783 ENSMUSP00000114797 TRANSLATION protein_coding - CCDS71048.1 1 365.0 15.0 3.2 6.4 186.7 0.0 -4,-5 0.6348 1 19.52 MINOR ENSMUSG00000000247 Lhx2 ENSMUST00000175896 - NO_TRANSLATION retained_intron ENSMUSG00000000247 Lhx2 ENSMUST00000000253 ENSMUSP00000000253 TRANSLATION protein_coding - CCDS16008.1 1 406.0 15.0 3.2 15.2 186.7 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000000247 Lhx2 ENSMUST00000149664 - NO_TRANSLATION retained_intron ENSMUSG00000075128 Or5d3 ENSMUST00000137895 ENSMUSP00000154417 TRANSLATION protein_coding start/stop - - 307.0 0.0 1.0 1.4 152.6 5.0 -4,-5 0.2872 - -2.0 MINOR ENSMUSG00000075128 Or5d3 ENSMUST00000216713 ENSMUSP00000153831 TRANSLATION protein_coding - - 3 319.0 0.0 1.0 0.0 154.2 5.0 -4,-7 0.8212 - 12.0 PRINCIPAL:1 ENSMUSG00000068742 Cry2 ENSMUST00000111278 ENSMUSP00000106909 TRANSLATION protein_coding - CCDS16447.1 1 592.0 48.0 9.35 0.0 424.1 0.0 -2,0 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000068742 Cry2 ENSMUST00000090559 ENSMUSP00000088047 TRANSLATION protein_coding - CCDS16447.1 1 592.0 48.0 9.35 0.0 424.1 0.0 -2,0 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000068742 Cry2 ENSMUST00000144842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068742 Cry2 ENSMUST00000125488 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042359 Osbpl6 ENSMUST00000124601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042359 Osbpl6 ENSMUST00000111929 ENSMUSP00000107560 TRANSLATION protein_coding - CCDS71078.1 1 959.0 0.0 8.878 12.5 474.7 0.0 -4,-7 0.9729 24 11.0 ALTERNATIVE:1 ENSMUSG00000042359 Osbpl6 ENSMUST00000134213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042359 Osbpl6 ENSMUST00000133275 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042359 Osbpl6 ENSMUST00000128034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042359 Osbpl6 ENSMUST00000184442 ENSMUSP00000139363 TRANSLATION nonsense_mediated_decay start - 1 801.0 0.0 8.198 0.0 430.9 0.0 -4,-6 0.0087 18 -2.0 MINOR ENSMUSG00000042359 Osbpl6 ENSMUST00000111930 ENSMUSP00000107561 TRANSLATION protein_coding - CCDS71079.1 1 928.0 0.0 8.878 12.5 474.7 0.0 -4,-7 0.9274 21 11.0 ALTERNATIVE:1 ENSMUSG00000042359 Osbpl6 ENSMUST00000077972 ENSMUSP00000077123 TRANSLATION protein_coding - CCDS16158.1 1 967.0 0.0 8.878 12.5 474.7 0.0 -4,-7 1.0 24 11.0 PRINCIPAL:4 ENSMUSG00000035949 Fbxw2 ENSMUST00000201806 - NO_TRANSLATION retained_intron ENSMUSG00000035949 Fbxw2 ENSMUST00000131534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035949 Fbxw2 ENSMUST00000091020 ENSMUSP00000088541 TRANSLATION protein_coding - CCDS50573.1 1 325.0 0.0 2.76 6.6 51.1 0.0 -4,-5 0.1778 2 9.604 MINOR ENSMUSG00000035949 Fbxw2 ENSMUST00000113075 ENSMUSP00000108698 TRANSLATION protein_coding - CCDS50574.1 1 359.0 0.0 2.91 0.7 82.5 0.0 -4,-7 0.119 4 11.502 MINOR ENSMUSG00000035949 Fbxw2 ENSMUST00000126051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035949 Fbxw2 ENSMUST00000150865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035949 Fbxw2 ENSMUST00000156130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035949 Fbxw2 ENSMUST00000134323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035949 Fbxw2 ENSMUST00000145180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035949 Fbxw2 ENSMUST00000028220 ENSMUSP00000028220 TRANSLATION protein_coding - CCDS15952.1 1 454.0 0.0 3.16 33.6 82.5 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000035949 Fbxw2 ENSMUST00000113077 ENSMUSP00000108700 TRANSLATION protein_coding - - 5 389.0 0.0 2.56 7.3 59.4 0.0 -4,-7 0.1384 2 9.892 MINOR ENSMUSG00000035949 Fbxw2 ENSMUST00000113078 ENSMUSP00000108701 TRANSLATION protein_coding - CCDS15952.1 1 454.0 0.0 3.16 33.6 82.5 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000035949 Fbxw2 ENSMUST00000145660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035949 Fbxw2 ENSMUST00000113080 ENSMUSP00000108703 TRANSLATION protein_coding - CCDS15952.1 1 454.0 0.0 3.16 33.6 82.5 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000109528 Or4f15 ENSMUST00000214935 ENSMUSP00000150108 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 12.5 124.8 8.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109528 Or4f15 ENSMUST00000217452 ENSMUSP00000150871 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 12.5 124.8 8.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109528 Or4f15 ENSMUST00000215045 ENSMUSP00000151123 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 12.5 124.8 8.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109528 Or4f15 ENSMUST00000207885 ENSMUSP00000146426 TRANSLATION protein_coding - CCDS16539.1 - 320.0 0.0 1.0 1.1 124.8 8.0 -4,-5 0.556 - 12.027 MINOR ENSMUSG00000109528 Or4f15 ENSMUST00000216948 ENSMUSP00000150941 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 12.5 124.8 8.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109528 Or4f15 ENSMUST00000214537 ENSMUSP00000150302 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 12.5 124.8 8.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026885 Ttll11 ENSMUST00000127742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026885 Ttll11 ENSMUST00000140201 ENSMUSP00000124510 TRANSLATION protein_coding stop - 3 210.0 3.0 1.935 0.0 163.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026885 Ttll11 ENSMUST00000161970 ENSMUSP00000125627 TRANSLATION nonsense_mediated_decay - - 5 190.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026885 Ttll11 ENSMUST00000160906 ENSMUSP00000125511 TRANSLATION protein_coding start - 1 511.0 6.0 3.185 0.0 210.4 0.0 -4,-2 0.0144 - -2.0 MINOR ENSMUSG00000026885 Ttll11 ENSMUST00000112976 ENSMUSP00000108600 TRANSLATION protein_coding - - 5 694.0 6.0 3.385 0.0 220.8 0.0 -4,-5 0.0694 - 12.0 ALTERNATIVE:2 ENSMUSG00000026885 Ttll11 ENSMUST00000160939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026885 Ttll11 ENSMUST00000160284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026885 Ttll11 ENSMUST00000028248 ENSMUSP00000028248 TRANSLATION protein_coding - CCDS50579.1 1 727.0 6.0 3.385 0.0 220.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000026885 Ttll11 ENSMUST00000162172 ENSMUSP00000125199 TRANSLATION protein_coding stop - 2 204.0 3.0 1.605 0.0 158.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000096566 Or4f14 ENSMUST00000099607 ENSMUSP00000097202 TRANSLATION protein_coding - CCDS16536.1 - 312.0 0.0 1.0 11.5 144.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096566 Or4f14 ENSMUST00000214844 ENSMUSP00000151142 TRANSLATION protein_coding - CCDS16536.1 5 312.0 0.0 1.0 11.5 144.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068115 Ninl ENSMUST00000150036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068115 Ninl ENSMUST00000149268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068115 Ninl ENSMUST00000128627 ENSMUSP00000121872 TRANSLATION protein_coding stop - 3 167.0 5.0 0.7 0.0 0.0 0.0 -4,-5 0.0394 - -2.0 MINOR ENSMUSG00000068115 Ninl ENSMUST00000150595 ENSMUSP00000117001 TRANSLATION protein_coding start/stop - 3 256.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0009 - -2.0 MINOR ENSMUSG00000068115 Ninl ENSMUST00000109896 ENSMUSP00000105522 TRANSLATION protein_coding - CCDS50744.1 5 1394.0 10.0 0.7 0.1 33.1 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000068115 Ninl ENSMUST00000128564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068115 Ninl ENSMUST00000149979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068115 Ninl ENSMUST00000124135 ENSMUSP00000122069 TRANSLATION protein_coding start/stop - 3 308.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0028 - -2.0 MINOR ENSMUSG00000068115 Ninl ENSMUST00000147293 - NO_TRANSLATION retained_intron ENSMUSG00000108919 Or4k45 ENSMUST00000207786 ENSMUSP00000147073 TRANSLATION protein_coding - CCDS16529.1 - 312.0 0.0 1.0 8.3 166.0 6.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108919 Or4k45 ENSMUST00000217772 ENSMUSP00000151314 TRANSLATION protein_coding - CCDS16529.1 5 312.0 0.0 1.0 8.3 166.0 6.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108919 Or4k45 ENSMUST00000207283 ENSMUSP00000146618 TRANSLATION protein_coding - CCDS16529.1 2 312.0 0.0 1.0 8.3 166.0 6.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056501 Cebpb ENSMUST00000070642 ENSMUSP00000069850 TRANSLATION protein_coding - CCDS17105.1 - 296.0 0.0 0.4 0.4 64.0 0.0 -4,-7 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000027222 Pex16 ENSMUST00000154669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027222 Pex16 ENSMUST00000028650 ENSMUSP00000028650 TRANSLATION protein_coding - CCDS16444.1 1 336.0 0.0 0.0 12.5 297.4 0.0 -4,-7 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000027222 Pex16 ENSMUST00000155891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027222 Pex16 ENSMUST00000148386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027318 Adam33 ENSMUST00000183552 ENSMUSP00000139344 TRANSLATION nonsense_mediated_decay - CCDS16753.1 1 797.0 19.0 9.78 0.0 464.8 0.0 1,-3 1.0 - -2.0 MINOR ENSMUSG00000027318 Adam33 ENSMUST00000184921 ENSMUSP00000139366 TRANSLATION nonsense_mediated_decay start - 5 60.0 5.0 1.5 0.0 39.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027318 Adam33 ENSMUST00000149625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027318 Adam33 ENSMUST00000127343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027318 Adam33 ENSMUST00000110232 ENSMUSP00000105861 TRANSLATION protein_coding - CCDS16753.1 1 797.0 19.0 9.78 0.0 464.8 0.0 1,-3 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000027318 Adam33 ENSMUST00000132071 - NO_TRANSLATION retained_intron ENSMUSG00000027318 Adam33 ENSMUST00000134742 - NO_TRANSLATION retained_intron ENSMUSG00000027318 Adam33 ENSMUST00000135149 ENSMUSP00000122608 TRANSLATION protein_coding start - 1 533.0 19.0 8.83 0.0 384.5 0.0 -4,-6 0.004 1 -2.0 MINOR ENSMUSG00000027318 Adam33 ENSMUST00000147333 ENSMUSP00000117097 TRANSLATION protein_coding start - 1 169.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0033 - -2.0 MINOR ENSMUSG00000027318 Adam33 ENSMUST00000124481 - NO_TRANSLATION retained_intron ENSMUSG00000027318 Adam33 ENSMUST00000128828 - NO_TRANSLATION retained_intron ENSMUSG00000027318 Adam33 ENSMUST00000052104 ENSMUSP00000052486 TRANSLATION protein_coding - CCDS50716.1 1 771.0 19.0 9.63 0.0 464.8 0.0 1,-3 0.4077 1 13.7 ALTERNATIVE:2 ENSMUSG00000027318 Adam33 ENSMUST00000132436 - NO_TRANSLATION retained_intron ENSMUSG00000004085 Map3k20 ENSMUST00000144111 ENSMUSP00000119340 TRANSLATION protein_coding stop - 5 74.0 11.0 1.75 0.0 31.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000004085 Map3k20 ENSMUST00000135469 ENSMUSP00000118983 TRANSLATION protein_coding - CCDS50605.1 1 454.0 20.0 8.46 0.0 213.7 0.0 -4,-5 0.1332 6 15.78 MINOR ENSMUSG00000004085 Map3k20 ENSMUST00000150126 - NO_TRANSLATION retained_intron ENSMUSG00000004085 Map3k20 ENSMUST00000112073 - NO_TRANSLATION retained_intron ENSMUSG00000004085 Map3k20 ENSMUST00000090824 ENSMUSP00000088334 TRANSLATION protein_coding - CCDS38143.1 1 802.0 20.0 8.46 10.6 250.7 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000004085 Map3k20 ENSMUST00000135204 - NO_TRANSLATION retained_intron ENSMUSG00000057182 Scn3a ENSMUST00000238483 ENSMUSP00000158593 TRANSLATION protein_coding stop - - 880.0 0.0 11.35 0.0 645.7 7.0 -4,-6 0.0232 6 -2.0 MINOR ENSMUSG00000057182 Scn3a ENSMUST00000126837 ENSMUSP00000115321 TRANSLATION protein_coding start/stop - 5 122.0 0.0 3.33 0.0 144.9 2.0 -4,-6 0.0005 - -2.0 MINOR ENSMUSG00000057182 Scn3a ENSMUST00000238409 ENSMUSP00000158784 TRANSLATION nonsense_mediated_decay start - - 137.0 0.0 0.4 0.0 58.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000057182 Scn3a ENSMUST00000155838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057182 Scn3a ENSMUST00000238417 ENSMUSP00000158693 TRANSLATION protein_coding start/stop - - 428.0 0.0 3.35 0.0 326.7 1.0 -4,-5 0.0007 5 -2.0 MINOR ENSMUSG00000057182 Scn3a ENSMUST00000238512 ENSMUSP00000158639 TRANSLATION nonsense_mediated_decay start - - 328.0 0.0 3.65 0.0 249.8 2.0 -4,-6 0.0005 4 -2.0 MINOR ENSMUSG00000057182 Scn3a ENSMUST00000100069 ENSMUSP00000097647 TRANSLATION protein_coding - CCDS50596.1 5 1947.0 4.0 20.6 0.0 1212.6 10.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000089824 Rbm12 ENSMUST00000131377 ENSMUSP00000120731 TRANSLATION protein_coding,RT stop - 5 288.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0402 - -2.0 ALTERNATIVE:2 ENSMUSG00000089824 Rbm12 ENSMUST00000059647 ENSMUSP00000050461 TRANSLATION protein_coding,RT - CCDS16961.1 1 992.0 0.0 0.4 1.7 84.4 0.0 -4,-7 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000089824 Rbm12 ENSMUST00000138068 ENSMUSP00000119519 TRANSLATION protein_coding,RT stop - 5 133.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0389 - -2.0 ALTERNATIVE:2 ENSMUSG00000089824 Rbm12 ENSMUST00000109604 ENSMUSP00000105233 TRANSLATION protein_coding,RT - CCDS16961.1 1 992.0 0.0 0.4 1.7 84.4 0.0 -4,-7 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000089824 Rbm12 ENSMUST00000128499 ENSMUSP00000118067 TRANSLATION protein_coding,RT stop - 5 143.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0387 - -2.0 ALTERNATIVE:2 ENSMUSG00000067996 Bpifb9b ENSMUST00000088921 ENSMUSP00000086311 TRANSLATION protein_coding - CCDS50762.1 1 591.0 0.0 0.0 0.1 33.8 0.0 1,-3 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000076437 Selenoh ENSMUST00000102647 ENSMUSP00000099707 TRANSLATION protein_coding - CCDS16187.1 1 116.0 0.0 2.28 8.4 38.0 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000076437 Selenoh ENSMUST00000189636 ENSMUSP00000139830 TRANSLATION protein_coding - - 3 123.0 0.0 2.28 0.0 35.4 0.0 -4,-7 0.0197 4 11.592 MINOR ENSMUSG00000076437 Selenoh ENSMUST00000154179 - NO_TRANSLATION retained_intron ENSMUSG00000076437 Selenoh ENSMUST00000189988 ENSMUSP00000139492 TRANSLATION protein_coding - - 3 101.0 0.0 1.2 0.0 25.6 0.0 -4,-7 0.0003 3 7.2 MINOR ENSMUSG00000076437 Selenoh ENSMUST00000102646 ENSMUSP00000099706 TRANSLATION protein_coding - CCDS16187.1 1 116.0 0.0 2.28 8.4 38.0 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000076437 Selenoh ENSMUST00000117299 ENSMUSP00000112635 TRANSLATION protein_coding - CCDS16187.1 1 116.0 0.0 2.28 8.4 38.0 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000042894 Or4c35 ENSMUST00000111512 ENSMUSP00000107137 TRANSLATION protein_coding - CCDS16399.1 2 310.0 0.0 4.0 6.3 153.4 12.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042894 Or4c35 ENSMUST00000213162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042894 Or4c35 ENSMUST00000144613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042894 Or4c35 ENSMUST00000144710 ENSMUSP00000119512 TRANSLATION protein_coding stop - 2 169.0 0.0 2.0 0.0 74.5 9.0 -4,-7 0.0022 - -2.0 MINOR ENSMUSG00000042894 Or4c35 ENSMUST00000061830 ENSMUSP00000053523 TRANSLATION protein_coding - CCDS16399.1 - 310.0 0.0 4.0 6.3 153.4 12.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042894 Or4c35 ENSMUST00000141685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042894 Or4c35 ENSMUST00000216744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042894 Or4c35 ENSMUST00000214630 ENSMUSP00000151110 TRANSLATION protein_coding stop - 5 217.0 0.0 3.0 0.0 93.8 10.0 -4,-7 0.0034 - -2.0 MINOR ENSMUSG00000042894 Or4c35 ENSMUST00000216678 ENSMUSP00000149289 TRANSLATION protein_coding stop - 5 88.0 0.0 1.0 0.0 28.6 4.0 -4,-6 0.0037 - -2.0 MINOR ENSMUSG00000027188 Pamr1 ENSMUST00000139090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027188 Pamr1 ENSMUST00000144333 - NO_TRANSLATION retained_intron ENSMUSG00000027188 Pamr1 ENSMUST00000143071 - NO_TRANSLATION retained_intron ENSMUSG00000027188 Pamr1 ENSMUST00000028612 ENSMUSP00000028612 TRANSLATION protein_coding - CCDS16468.1 1 720.0 2.0 2.415 12.6 317.1 0.0 1,-3 1.0 10 17.0 PRINCIPAL:1 ENSMUSG00000027018 Hat1 ENSMUST00000028408 ENSMUSP00000028408 TRANSLATION protein_coding - CCDS16114.1 1 416.0 13.0 9.75 7.9 151.5 0.0 -4,-5 1.0 5 14.668 PRINCIPAL:4 ENSMUSG00000027018 Hat1 ENSMUST00000112122 ENSMUSP00000107750 TRANSLATION protein_coding - - 5 423.0 15.0 9.42 7.9 151.5 0.0 -4,-5 0.8343 5 15.34 ALTERNATIVE:1 ENSMUSG00000027018 Hat1 ENSMUST00000145147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027018 Hat1 ENSMUST00000144888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009214 Mymk ENSMUST00000009358 ENSMUSP00000009358 TRANSLATION protein_coding - CCDS15823.1 1 221.0 0.0 5.0 27.6 160.1 5.0 0,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000009214 Mymk ENSMUST00000163967 ENSMUSP00000128491 TRANSLATION protein_coding - CCDS50545.1 3 180.0 0.0 4.0 0.0 109.4 4.0 -4,-7 0.0131 - 6.96 MINOR ENSMUSG00000017679 Ttpal ENSMUST00000144729 - NO_TRANSLATION retained_intron ENSMUSG00000017679 Ttpal ENSMUST00000171696 ENSMUSP00000128922 TRANSLATION protein_coding - CCDS38317.1 1 343.0 0.0 4.5 20.9 149.4 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000017679 Ttpal ENSMUST00000132904 - NO_TRANSLATION retained_intron ENSMUSG00000017679 Ttpal ENSMUST00000109408 ENSMUSP00000105035 TRANSLATION protein_coding - CCDS38317.1 1 343.0 0.0 4.5 20.9 149.4 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000017679 Ttpal ENSMUST00000109405 ENSMUSP00000105032 TRANSLATION nonsense_mediated_decay - - 1 168.0 0.0 1.1 0.0 33.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000017679 Ttpal ENSMUST00000156839 ENSMUSP00000121527 TRANSLATION protein_coding stop - 3 195.0 0.0 2.0 0.0 67.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000017679 Ttpal ENSMUST00000152135 ENSMUSP00000121669 TRANSLATION protein_coding stop - 2 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033902 Mapkbp1 ENSMUST00000148161 - NO_TRANSLATION retained_intron ENSMUSG00000033902 Mapkbp1 ENSMUST00000229024 ENSMUSP00000155163 TRANSLATION protein_coding - - - 1509.0 0.0 6.938 7.3 87.7 0.0 -4,-7 0.9117 17 10.0 ALTERNATIVE:1 ENSMUSG00000033902 Mapkbp1 ENSMUST00000066058 ENSMUSP00000068516 TRANSLATION protein_coding - CCDS16612.1 1 1503.0 0.0 6.872 6.2 87.7 0.0 -4,-7 1.0 17 9.518 PRINCIPAL:4 ENSMUSG00000033902 Mapkbp1 ENSMUST00000128077 - NO_TRANSLATION retained_intron ENSMUSG00000033902 Mapkbp1 ENSMUST00000137760 - NO_TRANSLATION retained_intron ENSMUSG00000062651 H2al2a ENSMUST00000105001 ENSMUSP00000100618 TRANSLATION protein_coding - CCDS38050.1 - 111.0 0.0 1.0 0.0 41.7 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000005510 Ndufs3 ENSMUST00000144683 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005510 Ndufs3 ENSMUST00000139400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005510 Ndufs3 ENSMUST00000140248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005510 Ndufs3 ENSMUST00000123426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005510 Ndufs3 ENSMUST00000005647 ENSMUSP00000005647 TRANSLATION protein_coding - CCDS16418.1 1 263.0 0.0 5.0 10.0 146.5 0.0 -2,2 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000005510 Ndufs3 ENSMUST00000152059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059540 Tcea2 ENSMUST00000103042 ENSMUSP00000099331 TRANSLATION protein_coding - CCDS17219.1 1 299.0 4.0 6.8 21.6 245.9 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000059540 Tcea2 ENSMUST00000129745 ENSMUSP00000119646 TRANSLATION protein_coding start - 1 292.0 4.0 6.05 0.0 245.9 0.0 -4,-6 0.0571 2 -2.0 MINOR ENSMUSG00000059540 Tcea2 ENSMUST00000126623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059540 Tcea2 ENSMUST00000136145 - NO_TRANSLATION retained_intron ENSMUSG00000059540 Tcea2 ENSMUST00000129686 - NO_TRANSLATION retained_intron ENSMUSG00000059540 Tcea2 ENSMUST00000126844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059540 Tcea2 ENSMUST00000125892 - NO_TRANSLATION retained_intron ENSMUSG00000059540 Tcea2 ENSMUST00000129006 ENSMUSP00000120083 TRANSLATION protein_coding start - 5 297.0 4.0 6.05 0.0 245.9 0.0 -4,-5 0.1052 2 -2.0 MINOR ENSMUSG00000059316 Slc27a4 ENSMUST00000080065 ENSMUSP00000078971 TRANSLATION protein_coding - CCDS15858.1 1 643.0 22.0 5.95 26.0 267.2 0.0 -1,-3 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000059316 Slc27a4 ENSMUST00000136444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075172 Or8k40 ENSMUST00000099875 ENSMUSP00000097460 TRANSLATION protein_coding - CCDS16267.1 - 313.0 0.0 1.0 11.0 160.9 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075172 Or8k40 ENSMUST00000215991 ENSMUSP00000150257 TRANSLATION protein_coding - CCDS16267.1 5 313.0 0.0 1.0 11.0 160.9 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075172 Or8k40 ENSMUST00000217043 ENSMUSP00000149968 TRANSLATION protein_coding - CCDS16267.1 3 313.0 0.0 1.0 11.0 160.9 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050368 Hoxd10 ENSMUST00000061745 ENSMUSP00000062412 TRANSLATION protein_coding - CCDS16141.1 1 340.0 0.0 1.0 0.0 72.6 0.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000027162 Lin7c ENSMUST00000028583 ENSMUSP00000028583 TRANSLATION protein_coding - CCDS16509.1 1 197.0 0.0 4.25 32.6 154.2 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000027162 Lin7c ENSMUST00000151163 - NO_TRANSLATION retained_intron ENSMUSG00000027177 Hipk3 ENSMUST00000111124 ENSMUSP00000106753 TRANSLATION protein_coding - CCDS16489.1 5 1192.0 17.0 4.95 9.4 164.5 0.0 -4,-6 1.0 1 14.709 PRINCIPAL:4 ENSMUSG00000027177 Hipk3 ENSMUST00000111125 ENSMUSP00000106754 TRANSLATION protein_coding - - 5 1213.0 17.0 4.95 10.3 164.5 0.0 -4,-6 0.867 1 15.0 ALTERNATIVE:1 ENSMUSG00000027177 Hipk3 ENSMUST00000028600 ENSMUSP00000028600 TRANSLATION protein_coding - CCDS16489.1 1 1192.0 17.0 4.95 9.4 164.5 0.0 -4,-6 1.0 1 14.709 PRINCIPAL:4 ENSMUSG00000027177 Hipk3 ENSMUST00000132622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017764 Zswim1 ENSMUST00000017908 ENSMUSP00000017908 TRANSLATION protein_coding - CCDS17059.1 1 455.0 0.0 0.0 8.5 28.4 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000017764 Zswim1 ENSMUST00000132282 ENSMUSP00000120356 TRANSLATION protein_coding stop - 3 146.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000027482 Bpifa3 ENSMUST00000125753 ENSMUSP00000135866 TRANSLATION nonsense_mediated_decay start - 3 102.0 0.0 0.6 0.0 56.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027482 Bpifa3 ENSMUST00000109746 ENSMUSP00000105368 TRANSLATION protein_coding - CCDS71163.1 1 232.0 0.0 2.055 1.2 114.8 0.0 4,-1 0.5347 - 6.154 ALTERNATIVE:2 ENSMUSG00000027482 Bpifa3 ENSMUST00000028984 ENSMUSP00000028984 TRANSLATION protein_coding - CCDS16924.1 1 239.0 0.0 2.055 2.3 114.8 0.0 4,-1 1.0 1 7.0 PRINCIPAL:2 ENSMUSG00000027303 Ptpra ENSMUST00000230516 - NO_TRANSLATION retained_intron ENSMUSG00000027303 Ptpra ENSMUST00000230640 - NO_TRANSLATION retained_intron ENSMUSG00000027303 Ptpra ENSMUST00000230615 - NO_TRANSLATION retained_intron ENSMUSG00000027303 Ptpra ENSMUST00000077303 ENSMUSP00000076533 TRANSLATION protein_coding - CCDS16743.1 1 829.0 22.0 15.0 0.0 539.7 1.0 1,-3 0.2795 14 16.764 MINOR ENSMUSG00000027303 Ptpra ENSMUST00000230491 - NO_TRANSLATION retained_intron ENSMUSG00000027303 Ptpra ENSMUST00000230886 - NO_TRANSLATION retained_intron ENSMUSG00000027303 Ptpra ENSMUST00000229567 - NO_TRANSLATION retained_intron ENSMUSG00000027303 Ptpra ENSMUST00000229814 - NO_TRANSLATION retained_intron ENSMUSG00000027303 Ptpra ENSMUST00000028769 ENSMUSP00000028769 TRANSLATION protein_coding - CCDS50712.1 1 793.0 22.0 15.0 6.0 560.3 1.0 1,-3 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000027303 Ptpra ENSMUST00000230981 ENSMUSP00000155099 TRANSLATION protein_coding stop - - 374.0 1.0 5.0 0.0 137.7 1.0 1,-3 0.0024 6 -2.0 MINOR ENSMUSG00000074682 Zcchc3 ENSMUST00000099207 ENSMUSP00000096813 TRANSLATION protein_coding - CCDS16884.1 - 400.0 12.0 0.0 0.4 20.1 0.0 -4,-5 0.9773 1 12.0 PRINCIPAL:1 ENSMUSG00000100016 Or4c110 ENSMUST00000188399 ENSMUSP00000141134 TRANSLATION protein_coding - CCDS16360.1 - 312.0 0.0 1.0 8.3 160.4 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000100016 Or4c110 ENSMUST00000214809 ENSMUSP00000151104 TRANSLATION protein_coding - CCDS16360.1 5 312.0 0.0 1.0 8.3 160.4 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000100016 Or4c110 ENSMUST00000216271 ENSMUSP00000150030 TRANSLATION protein_coding - CCDS16360.1 3 312.0 0.0 1.0 8.3 160.4 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074649 Mmp24os1 ENSMUST00000124586 ENSMUSP00000145349 TRANSLATION protein_coding - - 1 51.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.5982 - 1.0 PRINCIPAL:1 ENSMUSG00000015093 Clic3 ENSMUST00000114265 ENSMUSP00000109904 TRANSLATION protein_coding - CCDS15774.1 1 237.0 14.0 5.33 13.1 75.3 0.0 -4,-7 1.0 8 17.334 PRINCIPAL:4 ENSMUSG00000015093 Clic3 ENSMUST00000142006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015093 Clic3 ENSMUST00000132311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015093 Clic3 ENSMUST00000143862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015093 Clic3 ENSMUST00000140022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015093 Clic3 ENSMUST00000102918 ENSMUSP00000099982 TRANSLATION protein_coding - - 3 235.0 15.0 5.33 13.1 75.3 0.0 -4,-6 0.886 8 18.0 ALTERNATIVE:1 ENSMUSG00000017667 Zfp334 ENSMUST00000103084 ENSMUSP00000099373 TRANSLATION protein_coding - CCDS17079.1 1 679.0 56.0 0.6 0.1 332.1 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000063364 3300002I08Rik ENSMUST00000138130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063364 3300002I08Rik ENSMUST00000051153 ENSMUSP00000055454 TRANSLATION protein_coding - CCDS50740.1 1 147.0 0.0 1.75 0.0 83.0 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063364 3300002I08Rik ENSMUST00000152036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063364 3300002I08Rik ENSMUST00000124945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027342 Pcna ENSMUST00000149627 - NO_TRANSLATION retained_intron ENSMUSG00000027342 Pcna ENSMUST00000136676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027342 Pcna ENSMUST00000135181 - NO_TRANSLATION retained_intron ENSMUSG00000027342 Pcna ENSMUST00000140338 - NO_TRANSLATION retained_intron ENSMUSG00000027342 Pcna ENSMUST00000028817 ENSMUSP00000028817 TRANSLATION protein_coding - CCDS16771.1 1 261.0 0.0 5.5 36.9 410.6 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000046338 Gpat2 ENSMUST00000062211 ENSMUSP00000049619 TRANSLATION protein_coding - CCDS38232.2 5 801.0 0.0 1.35 9.1 28.4 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000053475 Tnfaip6 ENSMUST00000065927 ENSMUSP00000069231 TRANSLATION protein_coding - CCDS16032.1 1 275.0 5.0 4.7 18.4 225.9 0.0 1,-2 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000078903 Gm14391 ENSMUST00000151240 - NO_TRANSLATION retained_intron ENSMUSG00000078903 Gm14391 ENSMUST00000109058 ENSMUSP00000104686 TRANSLATION protein_coding - CCDS38363.1 3 554.0 67.0 3.25 0.4 432.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078903 Gm14391 ENSMUST00000109056 ENSMUSP00000104684 TRANSLATION protein_coding - - 3 522.0 67.0 2.25 0.1 352.4 0.0 -4,-5 0.0732 - 11.202 MINOR ENSMUSG00000078903 Gm14391 ENSMUST00000099028 ENSMUSP00000096626 TRANSLATION protein_coding - - 5 72.0 0.0 2.25 0.0 80.1 0.0 -4,-5 0.0 - 4.002 MINOR ENSMUSG00000078903 Gm14391 ENSMUST00000165892 ENSMUSP00000127636 TRANSLATION protein_coding - CCDS38363.1 5 554.0 67.0 3.25 0.4 432.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078903 Gm14391 ENSMUST00000109055 ENSMUSP00000104683 TRANSLATION protein_coding - - 1 64.0 0.0 2.25 0.4 80.1 0.0 -4,-5 0.0 - 4.002 MINOR ENSMUSG00000026821 Ralgds ENSMUST00000128680 - NO_TRANSLATION retained_intron ENSMUSG00000026821 Ralgds ENSMUST00000137215 ENSMUSP00000116215 TRANSLATION nonsense_mediated_decay start - 3 116.0 0.0 1.45 0.0 62.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026821 Ralgds ENSMUST00000135803 ENSMUSP00000115092 TRANSLATION protein_coding stop - 3 127.0 0.0 1.5 0.0 60.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026821 Ralgds ENSMUST00000113893 ENSMUSP00000109526 TRANSLATION protein_coding - CCDS50548.1 1 895.0 0.0 9.942 0.8 328.1 0.0 -4,-7 0.9508 1 7.5 PRINCIPAL:2 ENSMUSG00000026821 Ralgds ENSMUST00000137513 - NO_TRANSLATION retained_intron ENSMUSG00000026821 Ralgds ENSMUST00000100241 ENSMUSP00000097812 TRANSLATION protein_coding - CCDS50547.1 1 907.0 0.0 9.567 0.8 331.2 0.0 -4,-7 0.5275 1 7.25 ALTERNATIVE:2 ENSMUSG00000026821 Ralgds ENSMUST00000028170 ENSMUSP00000028170 TRANSLATION protein_coding - CCDS15840.1 1 852.0 0.0 9.567 0.8 331.2 0.0 -4,-5 0.3244 1 7.25 ALTERNATIVE:2 ENSMUSG00000026821 Ralgds ENSMUST00000130281 - NO_TRANSLATION retained_intron ENSMUSG00000026821 Ralgds ENSMUST00000146217 - NO_TRANSLATION retained_intron ENSMUSG00000026821 Ralgds ENSMUST00000140704 ENSMUSP00000118966 TRANSLATION protein_coding start - 3 152.0 0.0 2.65 0.0 61.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026821 Ralgds ENSMUST00000238699 ENSMUSP00000158697 TRANSLATION protein_coding - - - 869.0 0.0 8.667 0.0 310.9 0.0 -3,-1 0.0782 1 4.45 MINOR ENSMUSG00000042155 Klhl23 ENSMUST00000053087 ENSMUSP00000050219 TRANSLATION protein_coding - CCDS16100.1 1 558.0 0.0 1.58 31.9 364.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000042155 Klhl23 ENSMUST00000135759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042155 Klhl23 ENSMUST00000152898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000097638 Carlr ENSMUST00000181515 ENSMUSP00000159257 TRANSLATION protein_coding - - - 40.0 1.0 1.0 0.0 0.0 0.0 1,-4 0.727 - 6.0 PRINCIPAL:1 ENSMUSG00000039059 Hrh3 ENSMUST00000166724 ENSMUSP00000126336 TRANSLATION nonsense_mediated_decay - - 1 94.0 0.0 0.75 0.0 31.3 6.0 -3,-6 0.0023 - -2.0 MINOR ENSMUSG00000039059 Hrh3 ENSMUST00000056480 ENSMUSP00000049963 TRANSLATION protein_coding - CCDS17169.1 1 445.0 0.0 4.025 6.2 211.8 20.0 -3,-6 1.0 1 13.988 PRINCIPAL:1 ENSMUSG00000039059 Hrh3 ENSMUST00000165248 ENSMUSP00000130181 TRANSLATION protein_coding - - 5 407.0 0.0 3.575 0.0 211.7 20.0 -3,-6 0.0275 1 11.082 MINOR ENSMUSG00000039059 Hrh3 ENSMUST00000171736 ENSMUSP00000127085 TRANSLATION protein_coding - - 5 301.0 0.0 2.475 0.0 145.5 16.0 -3,-6 0.0042 - 4.908 MINOR ENSMUSG00000039059 Hrh3 ENSMUST00000163215 ENSMUSP00000127053 TRANSLATION protein_coding - - 5 466.0 0.0 2.85 0.0 184.4 19.0 -3,-6 0.0193 1 7.992 MINOR ENSMUSG00000039059 Hrh3 ENSMUST00000165762 ENSMUSP00000132203 TRANSLATION protein_coding - - 5 455.0 0.0 4.025 0.0 211.8 20.0 -3,-6 0.0885 1 11.988 MINOR ENSMUSG00000039059 Hrh3 ENSMUST00000166392 - NO_TRANSLATION retained_intron ENSMUSG00000039059 Hrh3 ENSMUST00000164442 ENSMUSP00000130553 TRANSLATION protein_coding - - 5 413.0 0.0 3.825 1.2 212.0 20.0 -3,-6 0.2018 1 11.674 MINOR ENSMUSG00000017412 Cacnb4 ENSMUST00000148837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017412 Cacnb4 ENSMUST00000078324 ENSMUSP00000077438 TRANSLATION protein_coding - CCDS16034.1 1 519.0 0.0 8.566 10.6 236.5 0.0 -4,-7 0.468 7 12.326 MINOR ENSMUSG00000017412 Cacnb4 ENSMUST00000102760 ENSMUSP00000099821 TRANSLATION protein_coding - CCDS16035.1 1 486.0 0.0 9.066 29.9 236.5 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000017412 Cacnb4 ENSMUST00000132322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017412 Cacnb4 ENSMUST00000102761 ENSMUSP00000099822 TRANSLATION protein_coding - CCDS71052.1 1 473.0 0.0 8.566 5.3 236.5 0.0 -4,-5 0.4285 6 11.594 MINOR ENSMUSG00000110804 Or8k37 ENSMUST00000216851 ENSMUSP00000150546 TRANSLATION protein_coding - CCDS38173.1 - 313.0 0.0 1.0 11.0 160.2 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111517 Or4a39 ENSMUST00000099781 ENSMUSP00000097369 TRANSLATION protein_coding - CCDS16378.1 - 315.0 0.0 1.0 7.0 155.2 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111517 Or4a39 ENSMUST00000217226 ENSMUSP00000150447 TRANSLATION protein_coding - CCDS16378.1 5 315.0 0.0 1.0 7.0 155.2 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111517 Or4a39 ENSMUST00000217237 ENSMUSP00000150367 TRANSLATION protein_coding - CCDS16378.1 5 315.0 0.0 1.0 7.0 155.2 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051747 Ttn ENSMUST00000147048 - NO_TRANSLATION retained_intron ENSMUSG00000051747 Ttn ENSMUST00000140091 ENSMUSP00000122470 TRANSLATION protein_coding stop - 1 645.0 0.0 3.375 0.0 361.8 0.0 -4,-7 0.002 24 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000099980 ENSMUSP00000097560 TRANSLATION protein_coding - - 5 5508.0 0.0 17.37 0.0 1770.7 0.0 -4,-7 0.1842 159 0.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000126515 ENSMUSP00000119089 TRANSLATION protein_coding start/stop - 5 183.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0377 3 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000123804 - NO_TRANSLATION retained_intron ENSMUSG00000051747 Ttn ENSMUST00000156257 ENSMUSP00000114666 TRANSLATION protein_coding start/stop - 3 91.0 0.0 0.0 0.0 30.6 0.0 -4,-5 0.0539 4 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000134720 ENSMUSP00000116594 TRANSLATION protein_coding start/stop - 5 8272.0 0.0 51.318 0.0 4182.8 0.0 -4,-5 0.2165 250 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000190813 ENSMUSP00000140714 TRANSLATION protein_coding start/stop - 5 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0539 1 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000138542 ENSMUSP00000116031 TRANSLATION protein_coding start/stop - 1 1135.0 0.0 3.948 0.0 251.6 0.0 -4,-5 0.0108 34 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000011934 ENSMUSP00000011934 TRANSLATION protein_coding - - 5 26938.0 3.0 87.09 0.0 11855.5 0.0 -4,-7 0.2312 982 3.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000130915 ENSMUSP00000115190 TRANSLATION protein_coding start/stop - 5 629.0 0.0 1.948 0.0 112.6 0.0 -4,-5 0.0027 24 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000150741 ENSMUSP00000117534 TRANSLATION protein_coding start/stop - 5 150.0 0.0 0.0 0.0 85.6 0.0 -4,-5 0.0413 1 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000142251 ENSMUSP00000119894 TRANSLATION protein_coding start/stop - 5 248.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0389 4 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000148747 ENSMUSP00000117447 TRANSLATION protein_coding start/stop - 5 3409.0 0.0 25.748 0.0 1954.3 0.0 -4,-5 0.195 109 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000123448 - NO_TRANSLATION retained_intron ENSMUSG00000051747 Ttn ENSMUST00000149616 ENSMUSP00000123202 TRANSLATION protein_coding start/stop - 5 544.0 0.0 1.948 0.0 52.0 0.0 -4,-5 0.014 20 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000128071 ENSMUSP00000118602 TRANSLATION protein_coding start/stop - 5 1054.0 0.0 1.948 0.0 190.8 0.0 -4,-5 0.0102 34 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000137854 ENSMUSP00000117059 TRANSLATION protein_coding start/stop - 5 203.0 0.0 0.0 0.0 22.8 0.0 -4,-5 0.0377 5 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000099981 ENSMUSP00000097561 TRANSLATION protein_coding - - 5 35390.0 3.0 135.948 0.0 16043.6 0.0 -4,-7 1.0 1220 15.0 PRINCIPAL:1 ENSMUSG00000051747 Ttn ENSMUST00000155365 ENSMUSP00000121095 TRANSLATION protein_coding start/stop - 5 679.0 0.0 1.948 0.0 138.3 0.0 -4,-5 0.0036 24 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000139832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051747 Ttn ENSMUST00000151097 ENSMUSP00000118209 TRANSLATION protein_coding start/stop - 5 153.0 0.0 0.0 0.0 58.7 0.0 -4,-5 0.0413 1 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000152185 ENSMUSP00000118492 TRANSLATION protein_coding start/stop - 5 710.0 0.0 1.948 0.0 109.5 0.0 -4,-5 0.006 24 -2.0 MINOR ENSMUSG00000051747 Ttn ENSMUST00000111846 ENSMUSP00000107477 TRANSLATION protein_coding - CCDS38154.1 5 33467.0 3.0 135.448 0.0 15607.1 0.0 -4,-7 0.7942 1202 7.998 MINOR ENSMUSG00000048186 Bend7 ENSMUST00000056914 ENSMUSP00000052458 TRANSLATION protein_coding - CCDS15658.1 1 434.0 0.0 0.6 5.9 64.8 0.0 -4,-7 1.0 4 10.0 PRINCIPAL:4 ENSMUSG00000048186 Bend7 ENSMUST00000115022 ENSMUSP00000110674 TRANSLATION protein_coding - - 1 401.0 0.0 0.6 0.0 64.8 0.0 -4,-7 0.0552 4 8.0 MINOR ENSMUSG00000048186 Bend7 ENSMUST00000138322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048186 Bend7 ENSMUST00000184139 ENSMUSP00000139220 TRANSLATION protein_coding - CCDS70974.1 1 433.0 0.0 0.6 5.9 64.8 0.0 -4,-7 0.9896 4 10.0 ALTERNATIVE:1 ENSMUSG00000039983 Ccdc32 ENSMUST00000036470 ENSMUSP00000038589 TRANSLATION protein_coding - CCDS50671.1 1 179.0 0.0 1.0 14.3 205.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000039983 Ccdc32 ENSMUST00000110833 ENSMUSP00000106457 TRANSLATION protein_coding - - 2 134.0 0.0 1.0 3.2 150.7 0.0 -4,-5 0.0983 2 9.396 MINOR ENSMUSG00000039983 Ccdc32 ENSMUST00000110834 ENSMUSP00000106458 TRANSLATION protein_coding - - 1 134.0 0.0 1.0 3.2 150.7 0.0 -4,-5 0.0983 2 9.396 MINOR ENSMUSG00000000394 Gcg ENSMUST00000136686 ENSMUSP00000115892 TRANSLATION protein_coding stop - 3 173.0 0.0 3.0 0.0 147.9 0.0 2,-2 0.064 4 -2.0 MINOR ENSMUSG00000000394 Gcg ENSMUST00000102733 ENSMUSP00000099794 TRANSLATION protein_coding - CCDS16066.1 1 180.0 0.0 3.33 11.5 147.9 0.0 2,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000000394 Gcg ENSMUST00000155624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027193 Api5 ENSMUST00000144390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027193 Api5 ENSMUST00000150930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027193 Api5 ENSMUST00000152454 - NO_TRANSLATION retained_intron ENSMUSG00000027193 Api5 ENSMUST00000028617 ENSMUSP00000028617 TRANSLATION protein_coding - CCDS16459.1 1 504.0 0.0 9.75 11.3 657.2 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000049044 Rapgef4 ENSMUST00000090826 ENSMUSP00000088336 TRANSLATION protein_coding - CCDS57176.1 1 1011.0 30.0 22.482 11.4 410.4 0.0 -4,-5 1.0 22 15.998 PRINCIPAL:4 ENSMUSG00000049044 Rapgef4 ENSMUST00000149421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049044 Rapgef4 ENSMUST00000122975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049044 Rapgef4 ENSMUST00000028525 ENSMUSP00000028525 TRANSLATION protein_coding - CCDS57177.1 1 867.0 17.0 18.982 5.9 354.1 0.0 -4,-6 0.2519 20 2.813 MINOR ENSMUSG00000049044 Rapgef4 ENSMUST00000102698 ENSMUSP00000099759 TRANSLATION protein_coding - CCDS16120.1 1 993.0 29.0 22.982 6.6 410.4 0.0 -4,-5 0.8628 22 14.948 ALTERNATIVE:1 ENSMUSG00000049044 Rapgef4 ENSMUST00000150234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049044 Rapgef4 ENSMUST00000151236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049044 Rapgef4 ENSMUST00000146970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049044 Rapgef4 ENSMUST00000153887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049044 Rapgef4 ENSMUST00000156031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049044 Rapgef4 ENSMUST00000124004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027284 Cdan1 ENSMUST00000110701 ENSMUSP00000106329 TRANSLATION protein_coding - CCDS38212.1 5 1239.0 0.0 0.0 0.1 129.1 0.0 -4,-5 0.5209 14 6.0 MINOR ENSMUSG00000027284 Cdan1 ENSMUST00000150860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027284 Cdan1 ENSMUST00000126133 - NO_TRANSLATION retained_intron ENSMUSG00000027284 Cdan1 ENSMUST00000124906 - NO_TRANSLATION retained_intron ENSMUSG00000027284 Cdan1 ENSMUST00000148285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027284 Cdan1 ENSMUST00000126753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027284 Cdan1 ENSMUST00000152692 - NO_TRANSLATION retained_intron ENSMUSG00000027284 Cdan1 ENSMUST00000110700 ENSMUSP00000106328 TRANSLATION protein_coding - - 5 1232.0 0.0 0.0 7.0 129.1 0.0 -4,-5 1.0 14 8.0 PRINCIPAL:1 ENSMUSG00000027284 Cdan1 ENSMUST00000136725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017734 Dbndd2 ENSMUST00000109349 ENSMUSP00000104973 TRANSLATION protein_coding - CCDS38322.1 1 158.0 0.0 0.8 9.4 106.6 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000017734 Dbndd2 ENSMUST00000017878 ENSMUSP00000017878 TRANSLATION protein_coding - CCDS38322.1 2 158.0 0.0 0.8 9.4 106.6 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000017734 Dbndd2 ENSMUST00000109350 ENSMUSP00000104974 TRANSLATION protein_coding - CCDS38322.1 2 158.0 0.0 0.8 9.4 106.6 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000017734 Dbndd2 ENSMUST00000143690 ENSMUSP00000122187 TRANSLATION protein_coding stop - 3 119.0 0.0 0.8 0.0 100.0 0.0 -4,-7 0.0181 - -2.0 MINOR ENSMUSG00000017734 Dbndd2 ENSMUST00000069385 ENSMUSP00000064437 TRANSLATION protein_coding - CCDS38322.1 1 158.0 0.0 0.8 9.4 106.6 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000017734 Dbndd2 ENSMUST00000149287 ENSMUSP00000128551 TRANSLATION nonsense_mediated_decay - CCDS38322.1 1 158.0 0.0 0.8 9.4 106.6 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000074646 6430550D23Rik ENSMUST00000086145 ENSMUSP00000083314 TRANSLATION protein_coding - CCDS50774.1 1 108.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8396 - 0.0 PRINCIPAL:2 ENSMUSG00000074646 6430550D23Rik ENSMUST00000156993 ENSMUSP00000115694 TRANSLATION protein_coding stop - 5 50.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.028 - -2.0 MINOR ENSMUSG00000074646 6430550D23Rik ENSMUST00000140657 ENSMUSP00000118982 TRANSLATION protein_coding - CCDS50775.1 5 194.0 0.0 0.0 0.0 0.0 1.0 0,-4 0.3001 - 0.0 ALTERNATIVE:2 ENSMUSG00000074646 6430550D23Rik ENSMUST00000141437 ENSMUSP00000114957 TRANSLATION protein_coding stop - 5 112.0 0.0 0.0 0.0 0.0 1.0 0,-4 0.1656 - -2.0 MINOR ENSMUSG00000074646 6430550D23Rik ENSMUST00000139116 ENSMUSP00000115643 TRANSLATION protein_coding - CCDS50775.1 3 194.0 0.0 0.0 0.0 0.0 1.0 0,-4 0.3001 - 0.0 ALTERNATIVE:2 ENSMUSG00000074646 6430550D23Rik ENSMUST00000138025 - NO_TRANSLATION retained_intron ENSMUSG00000074646 6430550D23Rik ENSMUST00000144686 ENSMUSP00000120293 TRANSLATION protein_coding stop - 3 139.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0313 - -2.0 MINOR ENSMUSG00000074646 6430550D23Rik ENSMUST00000124812 ENSMUSP00000116229 TRANSLATION nonsense_mediated_decay - - 2 103.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0654 - -2.0 MINOR ENSMUSG00000040383 Aqr ENSMUST00000140441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040383 Aqr ENSMUST00000131785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040383 Aqr ENSMUST00000147191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040383 Aqr ENSMUST00000154317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040383 Aqr ENSMUST00000126701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040383 Aqr ENSMUST00000102543 ENSMUSP00000099602 TRANSLATION protein_coding - CCDS71114.1 1 1400.0 13.0 27.005 0.0 1262.0 0.0 -4,-6 0.4746 21 16.002 MINOR ENSMUSG00000040383 Aqr ENSMUST00000043160 ENSMUSP00000047157 TRANSLATION protein_coding - CCDS16565.1 1 1481.0 13.0 28.005 0.0 1262.0 0.0 -4,-6 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000040383 Aqr ENSMUST00000129504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040383 Aqr ENSMUST00000125460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026754 Golga1 ENSMUST00000149810 ENSMUSP00000145206 TRANSLATION protein_coding start/stop - 5 186.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000026754 Golga1 ENSMUST00000204127 - NO_TRANSLATION retained_intron ENSMUSG00000026754 Golga1 ENSMUST00000126520 - NO_TRANSLATION retained_intron ENSMUSG00000026754 Golga1 ENSMUST00000112850 ENSMUSP00000108471 TRANSLATION protein_coding - CCDS71049.1 1 733.0 0.0 0.0 1.4 58.3 0.0 -4,-7 0.4209 19 6.174 MINOR ENSMUSG00000026754 Golga1 ENSMUST00000153914 ENSMUSP00000145253 TRANSLATION nonsense_mediated_decay start - 1 168.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026754 Golga1 ENSMUST00000039165 ENSMUSP00000037735 TRANSLATION protein_coding - CCDS16016.1 1 758.0 0.0 0.0 5.6 58.3 0.0 -4,-7 1.0 20 8.0 PRINCIPAL:1 ENSMUSG00000026754 Golga1 ENSMUST00000154210 ENSMUSP00000145051 TRANSLATION nonsense_mediated_decay start - 3 82.0 0.0 0.0 0.0 58.3 0.0 -4,-5 0.0217 1 -2.0 MINOR ENSMUSG00000026754 Golga1 ENSMUST00000149842 - NO_TRANSLATION retained_intron ENSMUSG00000026754 Golga1 ENSMUST00000184996 ENSMUSP00000139001 TRANSLATION nonsense_mediated_decay - CCDS16016.1 1 758.0 0.0 0.0 5.6 58.3 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000026754 Golga1 ENSMUST00000124463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026754 Golga1 ENSMUST00000136261 - NO_TRANSLATION retained_intron ENSMUSG00000050556 Kcnb1 ENSMUST00000148226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050556 Kcnb1 ENSMUST00000144351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050556 Kcnb1 ENSMUST00000059826 ENSMUSP00000057981 TRANSLATION protein_coding - CCDS17096.1 1 857.0 0.0 0.92 10.3 428.1 3.0 -4,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000050556 Kcnb1 ENSMUST00000207917 ENSMUSP00000147093 TRANSLATION protein_coding - CCDS17096.1 1 857.0 0.0 0.92 10.3 428.1 3.0 -4,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000079006 Gm14151 ENSMUST00000109890 ENSMUSP00000105516 TRANSLATION protein_coding - CCDS50745.1 5 640.0 17.0 0.4 0.0 229.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000079006 Gm14151 ENSMUST00000139910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026779 Mastl ENSMUST00000136207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026779 Mastl ENSMUST00000028119 ENSMUSP00000028119 TRANSLATION protein_coding - CCDS15727.1 1 865.0 18.0 3.432 0.4 197.2 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000043535 Setx ENSMUST00000145422 ENSMUSP00000119176 TRANSLATION protein_coding start/stop - 5 381.0 0.0 2.954 0.0 259.5 0.0 -4,-6 0.0006 4 -2.0 MINOR ENSMUSG00000043535 Setx ENSMUST00000154910 - NO_TRANSLATION retained_intron ENSMUSG00000043535 Setx ENSMUST00000061578 ENSMUSP00000051492 TRANSLATION protein_coding - CCDS38090.1 5 2646.0 0.0 4.0135 0.0 399.2 0.0 -4,-5 1.0 29 12.0 PRINCIPAL:1 ENSMUSG00000043535 Setx ENSMUST00000135992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043535 Setx ENSMUST00000129544 ENSMUSP00000119521 TRANSLATION protein_coding stop - 3 81.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060332 Tmc2 ENSMUST00000077988 ENSMUSP00000077139 TRANSLATION protein_coding - CCDS16736.1 1 888.0 0.0 0.0 2.6 126.5 8.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000060332 Tmc2 ENSMUST00000166774 ENSMUSP00000125843 TRANSLATION protein_coding - CCDS16736.1 2 888.0 0.0 0.0 2.6 126.5 8.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000027361 Gabpb1 ENSMUST00000103227 ENSMUSP00000099517 TRANSLATION protein_coding - CCDS16685.1 1 382.0 0.0 4.75 24.2 96.2 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000027361 Gabpb1 ENSMUST00000089745 ENSMUSP00000087177 TRANSLATION protein_coding - CCDS71135.1 1 233.0 0.0 4.43 0.8 96.2 0.0 -4,-5 0.0982 - 7.358 MINOR ENSMUSG00000027361 Gabpb1 ENSMUST00000130263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027361 Gabpb1 ENSMUST00000039978 ENSMUSP00000037673 TRANSLATION protein_coding - CCDS71136.1 1 347.0 0.0 4.75 1.0 96.2 0.0 -4,-5 0.2972 1 8.0 MINOR ENSMUSG00000027361 Gabpb1 ENSMUST00000110425 ENSMUSP00000106055 TRANSLATION protein_coding - CCDS71137.1 1 383.0 0.0 4.43 24.2 96.2 0.0 -4,-5 0.9792 1 11.358 ALTERNATIVE:1 ENSMUSG00000027361 Gabpb1 ENSMUST00000103226 ENSMUSP00000099516 TRANSLATION protein_coding - CCDS16686.1 1 348.0 0.0 4.43 0.0 96.2 0.0 -4,-5 0.0538 1 7.358 MINOR ENSMUSG00000027361 Gabpb1 ENSMUST00000110424 ENSMUSP00000106054 TRANSLATION protein_coding - CCDS16685.1 1 382.0 0.0 4.75 24.2 96.2 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000027361 Gabpb1 ENSMUST00000137335 ENSMUSP00000118358 TRANSLATION protein_coding stop - 3 46.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027361 Gabpb1 ENSMUST00000124972 ENSMUSP00000117355 TRANSLATION protein_coding stop - 3 72.0 0.0 2.08 0.0 29.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000075212 Or5g26 ENSMUST00000099918 ENSMUSP00000097502 TRANSLATION protein_coding - CCDS16213.1 - 318.0 0.0 1.0 0.4 163.5 0.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027287 Snap23 ENSMUST00000116437 ENSMUSP00000112138 TRANSLATION protein_coding - CCDS50681.1 1 221.0 0.0 4.65 5.6 73.8 0.0 -4,-5 0.3502 12 11.81 MINOR ENSMUSG00000027287 Snap23 ENSMUST00000153580 ENSMUSP00000121509 TRANSLATION protein_coding stop - 2 85.0 0.0 2.4 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000027287 Snap23 ENSMUST00000130759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027287 Snap23 ENSMUST00000110711 ENSMUSP00000106339 TRANSLATION protein_coding - CCDS16622.1 1 210.0 0.0 4.65 33.9 84.3 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000027287 Snap23 ENSMUST00000137144 - NO_TRANSLATION retained_intron ENSMUSG00000027287 Snap23 ENSMUST00000150611 ENSMUSP00000119652 TRANSLATION nonsense_mediated_decay - - 5 98.0 0.0 2.4 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027287 Snap23 ENSMUST00000142278 ENSMUSP00000116935 TRANSLATION protein_coding stop - 3 161.0 0.0 3.15 0.0 84.3 0.0 -4,-5 0.0005 8 -2.0 MINOR ENSMUSG00000027287 Snap23 ENSMUST00000147864 - NO_TRANSLATION retained_intron ENSMUSG00000027287 Snap23 ENSMUST00000028743 ENSMUSP00000028743 TRANSLATION protein_coding - CCDS16622.1 1 210.0 0.0 4.65 33.9 84.3 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000027082 Tfpi ENSMUST00000144775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027082 Tfpi ENSMUST00000150261 ENSMUSP00000122776 TRANSLATION protein_coding start - 1 246.0 0.0 2.598 0.0 135.1 0.0 3,-2 0.0006 3 -2.0 MINOR ENSMUSG00000027082 Tfpi ENSMUST00000111714 ENSMUSP00000107343 TRANSLATION protein_coding - CCDS50620.1 1 235.0 0.0 2.598 0.1 135.1 0.0 1,-3 0.0251 3 5.336 MINOR ENSMUSG00000027082 Tfpi ENSMUST00000111718 ENSMUSP00000107347 TRANSLATION protein_coding - CCDS16185.1 5 306.0 0.0 3.598 0.1 200.1 0.0 1,-3 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000027082 Tfpi ENSMUST00000111717 ENSMUSP00000107346 TRANSLATION protein_coding - CCDS50620.1 5 235.0 0.0 2.598 0.1 135.1 0.0 1,-3 0.0251 3 5.336 MINOR ENSMUSG00000027082 Tfpi ENSMUST00000028487 ENSMUSP00000028487 TRANSLATION protein_coding - CCDS16185.1 1 306.0 0.0 3.598 0.1 200.1 0.0 1,-3 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000027082 Tfpi ENSMUST00000111722 ENSMUSP00000107351 TRANSLATION protein_coding - - 5 300.0 0.0 3.4 0.1 200.1 0.0 1,-3 0.1207 4 7.604 ALTERNATIVE:2 ENSMUSG00000027082 Tfpi ENSMUST00000090732 ENSMUSP00000088235 TRANSLATION protein_coding - CCDS50620.1 1 235.0 0.0 2.598 0.1 135.1 0.0 1,-3 0.0251 3 5.336 MINOR ENSMUSG00000027082 Tfpi ENSMUST00000125677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027082 Tfpi ENSMUST00000111711 ENSMUSP00000107340 TRANSLATION protein_coding - - 5 247.0 0.0 2.4 0.1 135.1 0.0 1,-3 0.0 3 4.94 MINOR ENSMUSG00000039621 Prex1 ENSMUST00000136564 - NO_TRANSLATION retained_intron ENSMUSG00000039621 Prex1 ENSMUST00000136974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039621 Prex1 ENSMUST00000036719 ENSMUSP00000037180 TRANSLATION protein_coding - CCDS38334.1 1 1650.0 0.0 22.9 0.0 298.8 0.0 -4,-5 1.0 36 12.0 PRINCIPAL:1 ENSMUSG00000039621 Prex1 ENSMUST00000152238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039621 Prex1 ENSMUST00000099080 ENSMUSP00000096679 TRANSLATION protein_coding - - 1 1480.0 0.0 19.15 1.0 202.6 0.0 -4,-5 0.0297 32 0.228 MINOR ENSMUSG00000039621 Prex1 ENSMUST00000140624 - NO_TRANSLATION retained_intron ENSMUSG00000039621 Prex1 ENSMUST00000109246 ENSMUSP00000104869 TRANSLATION protein_coding - - 1 462.0 0.0 6.875 0.0 0.0 0.0 -4,-5 0.0 11 0.0 MINOR ENSMUSG00000039621 Prex1 ENSMUST00000127553 - NO_TRANSLATION retained_intron ENSMUSG00000015647 Lama5 ENSMUST00000015791 ENSMUSP00000015791 TRANSLATION protein_coding - CCDS38375.1 1 3718.0 0.0 26.5005 0.1 1526.8 0.0 -1,1 1.0 61 12.0 PRINCIPAL:1 ENSMUSG00000015647 Lama5 ENSMUST00000149812 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015647 Lama5 ENSMUST00000123906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015647 Lama5 ENSMUST00000130796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033213 AA467197 ENSMUST00000047498 ENSMUSP00000040781 TRANSLATION protein_coding - CCDS38224.1 1 83.0 0.0 2.83 24.8 81.2 1.0 -3,-4 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000033213 AA467197 ENSMUST00000142767 ENSMUSP00000117197 TRANSLATION protein_coding stop - 5 70.0 0.0 2.33 0.0 78.0 1.0 -3,-4 0.0111 5 -2.0 MINOR ENSMUSG00000033213 AA467197 ENSMUST00000110512 ENSMUSP00000106141 TRANSLATION protein_coding - CCDS38224.1 1 83.0 0.0 2.83 24.8 81.2 1.0 -3,-4 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000033213 AA467197 ENSMUST00000175727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027628 Aar2 ENSMUST00000126250 ENSMUSP00000114728 TRANSLATION protein_coding stop - 3 42.0 0.0 0.2 0.0 24.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000027628 Aar2 ENSMUST00000109570 ENSMUSP00000105198 TRANSLATION protein_coding - CCDS16967.1 1 384.0 0.0 0.64 20.0 352.2 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000027628 Aar2 ENSMUST00000137928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027628 Aar2 ENSMUST00000029158 ENSMUSP00000029158 TRANSLATION protein_coding - CCDS16967.1 1 384.0 0.0 0.64 20.0 352.2 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000027628 Aar2 ENSMUST00000150212 ENSMUSP00000118090 TRANSLATION protein_coding stop - 2 124.0 0.0 0.2 0.0 111.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000027207 Galk2 ENSMUST00000131643 ENSMUSP00000121752 TRANSLATION nonsense_mediated_decay - - 3 36.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027207 Galk2 ENSMUST00000134798 ENSMUSP00000118930 TRANSLATION protein_coding stop - 5 129.0 9.0 3.33 0.0 67.5 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000027207 Galk2 ENSMUST00000134337 ENSMUSP00000120728 TRANSLATION protein_coding stop - 5 182.0 14.0 4.08 0.0 112.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027207 Galk2 ENSMUST00000125084 ENSMUSP00000119902 TRANSLATION protein_coding stop - 3 91.0 9.0 2.5 0.0 84.2 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000027207 Galk2 ENSMUST00000094604 ENSMUSP00000092186 TRANSLATION protein_coding - CCDS71134.1 1 458.0 22.0 9.41 27.8 181.0 0.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000027207 Galk2 ENSMUST00000028636 ENSMUSP00000028636 TRANSLATION protein_coding - CCDS16680.1 1 447.0 22.0 8.745 10.3 181.0 0.0 -4,-6 0.4924 8 18.056 MINOR ENSMUSG00000027207 Galk2 ENSMUST00000135782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027207 Galk2 ENSMUST00000110454 - NO_TRANSLATION retained_intron ENSMUSG00000027207 Galk2 ENSMUST00000140873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019715 Gle1 ENSMUST00000127390 - NO_TRANSLATION retained_intron ENSMUSG00000019715 Gle1 ENSMUST00000124687 - NO_TRANSLATION retained_intron ENSMUSG00000019715 Gle1 ENSMUST00000123608 - NO_TRANSLATION retained_intron ENSMUSG00000019715 Gle1 ENSMUST00000019859 ENSMUSP00000019859 TRANSLATION protein_coding - CCDS15862.1 1 699.0 0.0 8.0 8.0 298.8 0.0 -4,-7 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000019715 Gle1 ENSMUST00000154490 - NO_TRANSLATION retained_intron ENSMUSG00000019715 Gle1 ENSMUST00000148983 - NO_TRANSLATION retained_intron ENSMUSG00000019715 Gle1 ENSMUST00000149730 - NO_TRANSLATION retained_intron ENSMUSG00000001998 Ap4e1 ENSMUST00000175663 ENSMUSP00000135599 TRANSLATION nonsense_mediated_decay - - 5 367.0 0.0 3.495 0.0 197.4 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000001998 Ap4e1 ENSMUST00000129859 - NO_TRANSLATION retained_intron ENSMUSG00000001998 Ap4e1 ENSMUST00000002063 ENSMUSP00000002063 TRANSLATION protein_coding - CCDS38231.1 1 1122.0 0.0 6.003 0.1 408.6 0.0 -4,-7 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000001998 Ap4e1 ENSMUST00000149254 - NO_TRANSLATION retained_intron ENSMUSG00000001998 Ap4e1 ENSMUST00000110393 ENSMUSP00000106023 TRANSLATION nonsense_mediated_decay - - 2 50.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000001998 Ap4e1 ENSMUST00000177372 ENSMUSP00000135449 TRANSLATION nonsense_mediated_decay - - 5 292.0 0.0 2.445 0.0 156.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000001998 Ap4e1 ENSMUST00000142740 ENSMUSP00000135257 TRANSLATION nonsense_mediated_decay start - 5 107.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000001998 Ap4e1 ENSMUST00000110394 ENSMUSP00000106024 TRANSLATION protein_coding - - 1 393.0 0.0 4.393 0.0 217.4 0.0 -4,-7 0.0 6 2.778 MINOR ENSMUSG00000075221 Or5ak22 ENSMUST00000099927 ENSMUSP00000097511 TRANSLATION protein_coding - CCDS16205.1 - 309.0 0.0 2.0 14.7 172.8 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075221 Or5ak22 ENSMUST00000214895 ENSMUSP00000149333 TRANSLATION protein_coding - CCDS16205.1 3 309.0 0.0 2.0 14.7 172.8 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075221 Or5ak22 ENSMUST00000215617 ENSMUSP00000149132 TRANSLATION protein_coding stop - 3 59.0 0.0 1.0 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000075221 Or5ak22 ENSMUST00000213749 ENSMUSP00000150680 TRANSLATION protein_coding - CCDS16205.1 5 309.0 0.0 2.0 14.7 172.8 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026915 Strbp ENSMUST00000144206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026915 Strbp ENSMUST00000145808 ENSMUSP00000120163 TRANSLATION protein_coding stop - 5 167.0 2.0 1.5 0.0 42.3 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000026915 Strbp ENSMUST00000135488 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026915 Strbp ENSMUST00000028279 ENSMUSP00000028279 TRANSLATION protein_coding - CCDS38118.1 5 672.0 4.0 10.13 17.1 356.8 0.0 -4,-7 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000026915 Strbp ENSMUST00000072186 ENSMUSP00000072047 TRANSLATION protein_coding - CCDS38118.1 1 672.0 4.0 10.13 17.1 356.8 0.0 -4,-7 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000026915 Strbp ENSMUST00000155237 ENSMUSP00000122263 TRANSLATION protein_coding stop - 5 128.0 2.0 0.8 0.0 25.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026915 Strbp ENSMUST00000204569 ENSMUSP00000144874 TRANSLATION nonsense_mediated_decay start - 5 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0209 - -2.0 MINOR ENSMUSG00000026915 Strbp ENSMUST00000183690 ENSMUSP00000139145 TRANSLATION nonsense_mediated_decay - - 1 648.0 4.0 10.13 9.4 356.8 0.0 -4,-7 0.668 18 -2.0 MINOR ENSMUSG00000026915 Strbp ENSMUST00000203861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068808 Or4c102 ENSMUST00000090700 ENSMUSP00000088201 TRANSLATION protein_coding - CCDS16341.1 - 306.0 0.0 1.0 8.6 139.8 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068808 Or4c102 ENSMUST00000213679 ENSMUSP00000149696 TRANSLATION protein_coding - CCDS16341.1 5 306.0 0.0 1.0 8.6 139.8 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027242 Wdr76 ENSMUST00000132373 - NO_TRANSLATION retained_intron ENSMUSG00000027242 Wdr76 ENSMUST00000110603 ENSMUSP00000106234 TRANSLATION protein_coding - - 5 622.0 0.0 2.6 1.1 0.0 0.0 -4,-5 0.0748 9 6.25 ALTERNATIVE:2 ENSMUSG00000027242 Wdr76 ENSMUST00000110602 ENSMUSP00000106232 TRANSLATION protein_coding - CCDS38218.1 1 524.0 0.0 2.6 1.4 0.0 0.0 -4,-5 1.0 9 7.0 PRINCIPAL:2 ENSMUSG00000027242 Wdr76 ENSMUST00000099473 ENSMUSP00000097072 TRANSLATION protein_coding - - 1 320.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.027 3 3.0 MINOR ENSMUSG00000027242 Wdr76 ENSMUST00000028676 ENSMUSP00000028676 TRANSLATION protein_coding - CCDS38218.1 1 524.0 0.0 2.6 1.4 0.0 0.0 -4,-5 1.0 9 7.0 PRINCIPAL:2 ENSMUSG00000027459 Fam110a ENSMUST00000062047 ENSMUSP00000053266 TRANSLATION protein_coding - CCDS16875.1 1 296.0 0.0 0.0 10.3 229.5 0.0 -4,-6 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000027459 Fam110a ENSMUST00000109864 ENSMUSP00000105490 TRANSLATION protein_coding - CCDS16875.1 1 296.0 0.0 0.0 10.3 229.5 0.0 -4,-6 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000027459 Fam110a ENSMUST00000109863 ENSMUSP00000105489 TRANSLATION protein_coding - CCDS16875.1 1 296.0 0.0 0.0 10.3 229.5 0.0 -4,-6 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000027459 Fam110a ENSMUST00000109865 ENSMUSP00000105491 TRANSLATION protein_coding - CCDS16875.1 2 296.0 0.0 0.0 10.3 229.5 0.0 -4,-6 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000090485 Gm17416 ENSMUST00000238626 ENSMUSP00000158829 TRANSLATION protein_coding - - - 87.0 0.0 0.0 0.0 37.2 0.0 4,-1 0.7165 - 6.0 PRINCIPAL:1 ENSMUSG00000090485 Gm17416 ENSMUST00000163724 ENSMUSP00000126447 TRANSLATION protein_coding start - - 66.0 0.0 0.0 0.0 37.2 0.0 -4,-7 0.0466 - -2.0 MINOR ENSMUSG00000090485 Gm17416 ENSMUST00000238204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028640 Tfap2c ENSMUST00000142633 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028640 Tfap2c ENSMUST00000099058 ENSMUSP00000096657 TRANSLATION protein_coding - - 1 513.0 0.0 4.0 0.0 289.1 0.0 -4,0 0.0675 - 12.0 MINOR ENSMUSG00000028640 Tfap2c ENSMUST00000170744 ENSMUSP00000129922 TRANSLATION protein_coding - CCDS50810.1 1 488.0 0.0 4.0 1.2 289.1 0.0 -4,-2 0.4321 - 12.075 MINOR ENSMUSG00000028640 Tfap2c ENSMUST00000122982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028640 Tfap2c ENSMUST00000128406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028640 Tfap2c ENSMUST00000030391 ENSMUSP00000030391 TRANSLATION protein_coding - CCDS17135.1 1 449.0 0.0 4.0 8.9 289.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078129 Actl10 ENSMUST00000104928 ENSMUSP00000100532 TRANSLATION protein_coding - CCDS50765.1 - 346.0 14.0 1.0 0.0 229.8 0.0 -4,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000027203 Dut ENSMUST00000133211 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027203 Dut ENSMUST00000082122 ENSMUSP00000080767 TRANSLATION protein_coding - CCDS50695.1 1 200.0 19.0 4.5 0.1 168.0 0.0 -3,1 0.1672 7 18.0 MINOR ENSMUSG00000027203 Dut ENSMUST00000051605 ENSMUSP00000057854 TRANSLATION protein_coding - CCDS16675.1 1 162.0 19.0 4.5 16.7 168.0 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000089892 Or4c104 ENSMUST00000099813 ENSMUSP00000097401 TRANSLATION protein_coding - CCDS16347.1 - 310.0 0.0 1.0 12.5 162.5 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000089892 Or4c104 ENSMUST00000124021 ENSMUSP00000149586 TRANSLATION protein_coding - CCDS16347.1 3 310.0 0.0 1.0 12.5 162.5 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000089892 Or4c104 ENSMUST00000213138 ENSMUSP00000149809 TRANSLATION protein_coding - CCDS16347.1 5 310.0 0.0 1.0 12.5 162.5 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000089892 Or4c104 ENSMUST00000131038 ENSMUSP00000150987 TRANSLATION protein_coding - CCDS16347.1 2 310.0 0.0 1.0 12.5 162.5 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046854 Pip5kl1 ENSMUST00000134204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046854 Pip5kl1 ENSMUST00000055304 ENSMUSP00000051282 TRANSLATION protein_coding - CCDS15920.1 1 395.0 2.0 2.299 8.4 212.6 0.0 -4,-6 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000046854 Pip5kl1 ENSMUST00000124980 - NO_TRANSLATION retained_intron ENSMUSG00000046854 Pip5kl1 ENSMUST00000100188 ENSMUSP00000097763 TRANSLATION nonsense_mediated_decay - - 1 366.0 2.0 2.299 0.0 165.1 0.0 -4,-5 0.0155 - -2.0 MINOR ENSMUSG00000002103 Acp2 ENSMUST00000239169 ENSMUSP00000159053 TRANSLATION protein_coding - CCDS16427.1 - 423.0 6.0 10.65 7.3 115.0 1.0 1,-4 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000002103 Acp2 ENSMUST00000124131 - NO_TRANSLATION retained_intron ENSMUSG00000002103 Acp2 ENSMUST00000002172 ENSMUSP00000002172 TRANSLATION protein_coding - CCDS16427.1 1 423.0 6.0 10.65 7.3 115.0 1.0 1,-4 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000002103 Acp2 ENSMUST00000127643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002103 Acp2 ENSMUST00000150403 ENSMUSP00000119144 TRANSLATION protein_coding stop - 5 305.0 6.0 7.4 0.0 102.1 0.0 1,-4 0.0114 5 -2.0 MINOR ENSMUSG00000002103 Acp2 ENSMUST00000238832 ENSMUSP00000159089 TRANSLATION protein_coding - - - 434.0 6.0 10.65 2.2 115.0 1.0 1,-4 0.3362 - -2.0 MINOR ENSMUSG00000002103 Acp2 ENSMUST00000155418 ENSMUSP00000116030 TRANSLATION protein_coding stop - 3 166.0 4.0 3.65 0.0 63.6 0.0 1,-3 0.0018 4 -2.0 MINOR ENSMUSG00000070544 Top1 ENSMUST00000164694 - NO_TRANSLATION retained_intron ENSMUSG00000070544 Top1 ENSMUST00000129289 - NO_TRANSLATION retained_intron ENSMUSG00000070544 Top1 ENSMUST00000109468 ENSMUSP00000105094 TRANSLATION protein_coding - CCDS16995.1 1 767.0 5.0 12.95 10.6 794.2 0.0 -4,-5 1.0 21 20.0 PRINCIPAL:1 ENSMUSG00000070544 Top1 ENSMUST00000164510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070544 Top1 ENSMUST00000150039 - NO_TRANSLATION retained_intron ENSMUSG00000070544 Top1 ENSMUST00000133262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000111863 Or1j18 ENSMUST00000216882 ENSMUSP00000151158 TRANSLATION protein_coding - CCDS15979.1 5 312.0 0.0 1.0 4.1 195.4 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111863 Or1j18 ENSMUST00000078761 ENSMUSP00000077819 TRANSLATION protein_coding - CCDS15979.1 - 312.0 0.0 1.0 4.1 195.4 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027509 Rae1 ENSMUST00000132212 ENSMUSP00000121815 TRANSLATION protein_coding stop - 2 203.0 0.0 5.4 0.0 38.9 0.0 -4,-7 0.004 7 -2.0 MINOR ENSMUSG00000027509 Rae1 ENSMUST00000138237 - NO_TRANSLATION retained_intron ENSMUSG00000027509 Rae1 ENSMUST00000124793 - NO_TRANSLATION retained_intron ENSMUSG00000027509 Rae1 ENSMUST00000123039 - NO_TRANSLATION retained_intron ENSMUSG00000027509 Rae1 ENSMUST00000029013 ENSMUSP00000029013 TRANSLATION protein_coding - CCDS17138.1 1 368.0 0.0 9.23 36.0 38.9 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000026833 Olfm1 ENSMUST00000100244 ENSMUSP00000097815 TRANSLATION protein_coding - CCDS15833.1 1 457.0 0.0 2.532 22.8 457.7 0.0 2,-2 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000026833 Olfm1 ENSMUST00000113920 ENSMUSP00000109553 TRANSLATION protein_coding - - 1 442.0 0.0 2.532 0.7 457.7 0.0 -4,-5 0.187 10 12.0 MINOR ENSMUSG00000026833 Olfm1 ENSMUST00000102879 ENSMUSP00000099943 TRANSLATION protein_coding - CCDS15835.1 1 153.0 0.0 0.132 3.4 162.9 0.0 -2,-5 0.1 3 0.752 MINOR ENSMUSG00000026833 Olfm1 ENSMUST00000152415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026833 Olfm1 ENSMUST00000028177 ENSMUSP00000028177 TRANSLATION protein_coding - CCDS15834.1 1 485.0 0.0 2.532 0.0 457.7 0.0 -2,-5 0.2208 11 12.0 MINOR ENSMUSG00000039356 Exosc2 ENSMUST00000146135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039356 Exosc2 ENSMUST00000125883 ENSMUSP00000141404 TRANSLATION nonsense_mediated_decay start - 5 74.0 0.0 2.0 0.0 58.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000039356 Exosc2 ENSMUST00000149094 - NO_TRANSLATION retained_intron ENSMUSG00000039356 Exosc2 ENSMUST00000137156 ENSMUSP00000118770 TRANSLATION protein_coding stop - 5 247.0 0.0 5.93 0.0 109.3 0.0 -4,-7 0.0061 6 -2.0 MINOR ENSMUSG00000039356 Exosc2 ENSMUST00000192043 - NO_TRANSLATION retained_intron ENSMUSG00000039356 Exosc2 ENSMUST00000038474 ENSMUSP00000043519 TRANSLATION protein_coding - CCDS15900.1 1 293.0 0.0 7.43 30.9 109.3 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000026926 Pmpca ENSMUST00000137686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026926 Pmpca ENSMUST00000114093 ENSMUSP00000109727 TRANSLATION protein_coding - - 1 441.0 1.0 5.245 0.0 280.7 0.0 -2,1 0.0085 15 8.754 MINOR ENSMUSG00000026926 Pmpca ENSMUST00000135155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026926 Pmpca ENSMUST00000139535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026926 Pmpca ENSMUST00000076431 ENSMUSP00000075762 TRANSLATION protein_coding - CCDS15804.1 1 524.0 1.0 6.545 4.6 291.5 0.0 -2,1 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000026926 Pmpca ENSMUST00000134871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074766 Ism1 ENSMUST00000184404 ENSMUSP00000139280 TRANSLATION protein_coding - CCDS50730.2 1 461.0 0.0 1.4 8.4 121.6 0.0 2,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074766 Ism1 ENSMUST00000099307 ENSMUSP00000096910 TRANSLATION protein_coding - - 5 454.0 0.0 1.4 1.4 121.6 0.0 2,-2 0.3169 - 12.162 MINOR ENSMUSG00000026840 Lamc3 ENSMUST00000138325 ENSMUSP00000118745 TRANSLATION protein_coding stop - 1 1537.0 6.0 9.685 0.0 688.9 0.0 1,-2 0.3699 21 -2.0 MINOR ENSMUSG00000026840 Lamc3 ENSMUST00000028187 ENSMUSP00000028187 TRANSLATION protein_coding - CCDS15903.1 1 1581.0 6.0 10.285 0.1 688.9 0.0 1,-2 1.0 22 18.0 PRINCIPAL:1 ENSMUSG00000026840 Lamc3 ENSMUST00000135995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096764 Gm21985 ENSMUST00000141047 ENSMUSP00000124314 TRANSLATION nonsense_mediated_decay,RT - - 2 1106.0 0.0 17.932 0.0 348.7 0.0 -4,-6 0.9506 - -2.0 PRINCIPAL:1 ENSMUSG00000027356 Fermt1 ENSMUST00000038280 ENSMUSP00000047616 TRANSLATION protein_coding - CCDS38248.1 5 677.0 0.0 11.0 20.8 187.4 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000027356 Fermt1 ENSMUST00000144342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027356 Fermt1 ENSMUST00000134937 - NO_TRANSLATION retained_intron ENSMUSG00000027356 Fermt1 ENSMUST00000143981 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027359 Slc27a2 ENSMUST00000126249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027359 Slc27a2 ENSMUST00000061491 ENSMUSP00000057595 TRANSLATION protein_coding - CCDS16683.1 1 620.0 22.0 6.8 12.9 260.6 1.0 2,-2 1.0 26 21.0 PRINCIPAL:1 ENSMUSG00000027359 Slc27a2 ENSMUST00000150947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027359 Slc27a2 ENSMUST00000141482 ENSMUSP00000117145 TRANSLATION protein_coding - - 5 484.0 22.0 6.0 0.0 169.1 1.0 -4,-7 0.0021 23 10.908 MINOR ENSMUSG00000044487 Or12e1 ENSMUST00000053050 ENSMUSP00000052341 TRANSLATION protein_coding - CCDS16284.1 - 318.0 0.0 1.0 7.3 174.6 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044487 Or12e1 ENSMUST00000216772 ENSMUSP00000149960 TRANSLATION protein_coding - CCDS16284.1 5 318.0 0.0 1.0 7.3 174.6 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000074625 Arhgap40 ENSMUST00000135838 - NO_TRANSLATION retained_intron ENSMUSG00000074625 Arhgap40 ENSMUST00000099133 ENSMUSP00000096736 TRANSLATION protein_coding - CCDS50787.1 5 672.0 0.0 2.52 1.3 139.5 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000023224 Serping1 ENSMUST00000023994 ENSMUSP00000023994 TRANSLATION protein_coding - CCDS16193.1 1 504.0 0.0 5.5 0.1 241.9 0.0 3,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000023224 Serping1 ENSMUST00000131456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023224 Serping1 ENSMUST00000111641 ENSMUSP00000107268 TRANSLATION protein_coding - - 5 347.0 0.0 3.5 0.0 126.9 0.0 3,-2 0.0012 7 1.998 MINOR ENSMUSG00000074952 Or4f57 ENSMUST00000099605 ENSMUSP00000097200 TRANSLATION protein_coding - CCDS16538.1 - 320.0 0.0 1.0 1.5 134.0 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000074952 Or4f57 ENSMUST00000207560 ENSMUSP00000146688 TRANSLATION protein_coding - CCDS16538.1 3 320.0 0.0 1.0 1.5 134.0 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000027309 Dnaaf9 ENSMUST00000138990 ENSMUSP00000120742 TRANSLATION protein_coding stop - 3 48.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0092 - -2.0 MINOR ENSMUSG00000027309 Dnaaf9 ENSMUST00000148924 - NO_TRANSLATION retained_intron ENSMUSG00000027309 Dnaaf9 ENSMUST00000119422 ENSMUSP00000113481 TRANSLATION protein_coding - CCDS79848.1 1 1048.0 0.0 1.428 0.0 0.0 0.0 -4,-5 0.1925 10 3.72 MINOR ENSMUSG00000027309 Dnaaf9 ENSMUST00000139684 ENSMUSP00000117915 TRANSLATION nonsense_mediated_decay start - 3 86.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0157 1 -2.0 MINOR ENSMUSG00000027309 Dnaaf9 ENSMUST00000142128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027309 Dnaaf9 ENSMUST00000151673 - NO_TRANSLATION retained_intron ENSMUSG00000027309 Dnaaf9 ENSMUST00000110243 ENSMUSP00000105872 TRANSLATION protein_coding - - 1 265.0 0.0 2.16625 0.0 0.0 0.0 -4,-7 0.014 4 5.646 MINOR ENSMUSG00000027309 Dnaaf9 ENSMUST00000123049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027309 Dnaaf9 ENSMUST00000146975 ENSMUSP00000119346 TRANSLATION protein_coding stop - 5 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0223 - -2.0 MINOR ENSMUSG00000027309 Dnaaf9 ENSMUST00000144014 - NO_TRANSLATION retained_intron ENSMUSG00000027309 Dnaaf9 ENSMUST00000138758 ENSMUSP00000120811 TRANSLATION protein_coding start/stop - 3 212.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0172 3 -2.0 MINOR ENSMUSG00000027309 Dnaaf9 ENSMUST00000144717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027309 Dnaaf9 ENSMUST00000133132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027309 Dnaaf9 ENSMUST00000145851 ENSMUSP00000118946 TRANSLATION protein_coding start/stop - 3 247.0 0.0 0.225 0.0 0.0 0.0 -4,-5 0.0136 3 -2.0 MINOR ENSMUSG00000027309 Dnaaf9 ENSMUST00000148932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027309 Dnaaf9 ENSMUST00000044766 ENSMUSP00000046992 TRANSLATION protein_coding - CCDS16750.1 1 1179.0 0.0 2.30175 9.3 0.0 0.0 -4,-7 1.0 14 9.0 PRINCIPAL:1 ENSMUSG00000027309 Dnaaf9 ENSMUST00000120316 ENSMUSP00000112540 TRANSLATION protein_coding stop - 3 59.0 0.0 0.6225 0.0 0.0 0.0 -4,-5 0.0083 - -2.0 MINOR ENSMUSG00000026770 Il2ra ENSMUST00000028111 ENSMUSP00000028111 TRANSLATION protein_coding - CCDS15685.1 1 268.0 0.0 0.8 3.8 18.7 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026770 Il2ra ENSMUST00000195427 - NO_TRANSLATION retained_intron ENSMUSG00000026770 Il2ra ENSMUST00000150890 ENSMUSP00000141881 TRANSLATION protein_coding - - 1 44.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0014 - 0.0 MINOR ENSMUSG00000059379 Or9g8 ENSMUST00000076250 ENSMUSP00000075600 TRANSLATION protein_coding - CCDS16219.1 - 305.0 0.0 1.0 11.4 169.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059379 Or9g8 ENSMUST00000213453 ENSMUSP00000150352 TRANSLATION protein_coding - CCDS16219.1 3 305.0 0.0 1.0 11.4 169.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111021 Or1j21 ENSMUST00000216753 ENSMUSP00000149648 TRANSLATION protein_coding - CCDS15981.1 5 312.0 0.0 1.0 6.5 189.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111021 Or1j21 ENSMUST00000217041 ENSMUSP00000149484 TRANSLATION protein_coding - CCDS15981.1 5 312.0 0.0 1.0 6.5 189.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111021 Or1j21 ENSMUST00000112950 ENSMUSP00000108572 TRANSLATION protein_coding - CCDS15981.1 - 312.0 0.0 1.0 6.5 189.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075132 Or5d43 ENSMUST00000216887 ENSMUSP00000149617 TRANSLATION protein_coding - CCDS16330.1 - 312.0 0.0 1.0 2.8 157.5 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075132 Or5d43 ENSMUST00000099830 ENSMUSP00000097418 TRANSLATION protein_coding - CCDS16330.1 5 312.0 0.0 1.0 2.8 157.5 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000027618 Nfs1 ENSMUST00000125449 - NO_TRANSLATION retained_intron ENSMUSG00000027618 Nfs1 ENSMUST00000184469 ENSMUSP00000139294 TRANSLATION protein_coding start - 5 141.0 7.0 1.75 0.0 41.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027618 Nfs1 ENSMUST00000029147 ENSMUSP00000029147 TRANSLATION protein_coding - CCDS16962.1 1 459.0 13.0 11.5 0.4 309.9 0.0 -2,2 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000027618 Nfs1 ENSMUST00000109600 ENSMUSP00000105229 TRANSLATION protein_coding - - 1 148.0 0.0 2.0 0.0 38.0 0.0 -2,2 0.0 2 0.0 MINOR ENSMUSG00000039496 Cdnf ENSMUST00000036350 ENSMUSP00000046297 TRANSLATION protein_coding - CCDS15654.1 1 187.0 0.0 3.4 11.3 225.0 0.0 0,-3 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000039496 Cdnf ENSMUST00000140610 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039496 Cdnf ENSMUST00000132566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023391 Dlx2 ENSMUST00000134249 - NO_TRANSLATION retained_intron ENSMUSG00000023391 Dlx2 ENSMUST00000024159 ENSMUSP00000024159 TRANSLATION protein_coding - CCDS16117.1 1 332.0 0.0 1.2 7.2 142.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079247 Cwc22rt6 ENSMUST00000099947 ENSMUSP00000097530 TRANSLATION protein_coding - - - 830.0 0.0 0.8 0.0 130.3 0.0 -4,-2 0.8676 - 12.0 PRINCIPAL:1 ENSMUSG00000045822 Zswim3 ENSMUST00000052107 ENSMUSP00000050970 TRANSLATION protein_coding - CCDS17058.1 1 695.0 0.0 0.0 2.5 28.4 0.0 -4,-5 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000055882 Abhd16b ENSMUST00000069649 ENSMUSP00000066520 TRANSLATION protein_coding - CCDS17213.1 - 474.0 0.0 0.0 9.9 37.4 0.0 -3,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000027198 Ext2 ENSMUST00000028623 ENSMUSP00000028623 TRANSLATION protein_coding - CCDS16456.1 1 718.0 17.0 3.513 29.8 524.9 4.0 -4,-2 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000027198 Ext2 ENSMUST00000145838 ENSMUSP00000122144 TRANSLATION protein_coding stop - 5 213.0 0.0 0.0 0.0 53.7 4.0 -4,-2 0.0037 6 -2.0 MINOR ENSMUSG00000027198 Ext2 ENSMUST00000152344 - NO_TRANSLATION retained_intron ENSMUSG00000027198 Ext2 ENSMUST00000125027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027198 Ext2 ENSMUST00000139321 - NO_TRANSLATION retained_intron ENSMUSG00000027198 Ext2 ENSMUST00000123649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027198 Ext2 ENSMUST00000144780 ENSMUSP00000119281 TRANSLATION protein_coding start - 3 20.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027198 Ext2 ENSMUST00000125407 ENSMUSP00000120291 TRANSLATION nonsense_mediated_decay - - 5 407.0 0.0 0.0 0.0 195.0 4.0 -4,-2 0.0029 11 -2.0 MINOR ENSMUSG00000027198 Ext2 ENSMUST00000157046 - NO_TRANSLATION retained_intron ENSMUSG00000027198 Ext2 ENSMUST00000111248 ENSMUSP00000106879 TRANSLATION protein_coding stop - 2 122.0 0.0 0.0 0.0 0.0 4.0 -4,-2 0.0023 2 -2.0 MINOR ENSMUSG00000027198 Ext2 ENSMUST00000132429 ENSMUSP00000123492 TRANSLATION protein_coding start - 2 100.0 6.0 1.373 0.0 127.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027198 Ext2 ENSMUST00000184931 ENSMUSP00000138956 TRANSLATION protein_coding - - 1 586.0 10.0 0.9 0.0 295.7 4.0 -4,-2 0.0031 13 2.106 MINOR ENSMUSG00000038963 Slco4a1 ENSMUST00000038259 ENSMUSP00000046502 TRANSLATION protein_coding - CCDS17176.1 1 723.0 0.0 0.0 1.1 622.3 12.0 -4,-6 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000038963 Slco4a1 ENSMUST00000138446 - NO_TRANSLATION retained_intron ENSMUSG00000038963 Slco4a1 ENSMUST00000128367 - NO_TRANSLATION retained_intron ENSMUSG00000038963 Slco4a1 ENSMUST00000139902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038963 Slco4a1 ENSMUST00000038225 ENSMUSP00000045023 TRANSLATION protein_coding - CCDS17176.1 1 723.0 0.0 0.0 1.1 622.3 12.0 -4,-6 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000026646 Suv39h2 ENSMUST00000127540 ENSMUSP00000125485 TRANSLATION nonsense_mediated_decay - - 1 116.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000026646 Suv39h2 ENSMUST00000100458 ENSMUSP00000098026 TRANSLATION protein_coding start - 1 375.0 42.0 4.2 0.0 172.4 0.0 -4,-7 0.0204 3 -2.0 MINOR ENSMUSG00000026646 Suv39h2 ENSMUST00000060618 ENSMUSP00000054169 TRANSLATION protein_coding - - 1 257.0 29.0 2.4 0.0 58.2 0.0 -4,-2 0.001 2 1.998 MINOR ENSMUSG00000026646 Suv39h2 ENSMUST00000027956 ENSMUSP00000027956 TRANSLATION protein_coding - CCDS15652.1 1 477.0 46.0 4.4 0.1 181.1 0.0 -4,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000078902 Gm14443 ENSMUST00000127251 - NO_TRANSLATION retained_intron ENSMUSG00000078902 Gm14443 ENSMUST00000109054 ENSMUSP00000104682 TRANSLATION protein_coding - - 5 610.0 74.0 1.15 0.1 486.9 0.0 -4,-5 0.8505 - 18.0 PRINCIPAL:1 ENSMUSG00000039515 Ptpa ENSMUST00000136009 ENSMUSP00000114985 TRANSLATION protein_coding - - 3 61.0 4.0 1.75 0.0 89.3 0.0 -4,-6 0.0 3 0.0 MINOR ENSMUSG00000039515 Ptpa ENSMUST00000135105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039515 Ptpa ENSMUST00000152165 ENSMUSP00000117121 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039515 Ptpa ENSMUST00000125743 - NO_TRANSLATION retained_intron ENSMUSG00000039515 Ptpa ENSMUST00000128516 - NO_TRANSLATION retained_intron ENSMUSG00000039515 Ptpa ENSMUST00000130741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039515 Ptpa ENSMUST00000137741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039515 Ptpa ENSMUST00000131476 ENSMUSP00000116268 TRANSLATION protein_coding - - 2 61.0 4.0 1.75 0.0 89.3 0.0 -4,-6 0.0 3 0.0 MINOR ENSMUSG00000039515 Ptpa ENSMUST00000113603 ENSMUSP00000109233 TRANSLATION protein_coding - - 5 281.0 13.0 7.5 1.0 312.3 0.0 -4,-5 0.0118 9 10.002 MINOR ENSMUSG00000039515 Ptpa ENSMUST00000042055 ENSMUSP00000046837 TRANSLATION protein_coding - CCDS15883.1 1 323.0 13.0 8.5 19.2 418.2 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000039515 Ptpa ENSMUST00000159932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039515 Ptpa ENSMUST00000125561 ENSMUSP00000114290 TRANSLATION nonsense_mediated_decay start - 3 126.0 4.0 3.0825 0.0 184.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039515 Ptpa ENSMUST00000113601 ENSMUSP00000109231 TRANSLATION protein_coding - - 5 104.0 4.0 2.75 0.0 88.9 0.0 -4,-5 0.0 6 0.0 MINOR ENSMUSG00000026728 Vim ENSMUST00000155605 - NO_TRANSLATION retained_intron ENSMUSG00000026728 Vim ENSMUST00000141365 ENSMUSP00000114742 TRANSLATION protein_coding stop - 2 134.0 0.0 0.4 0.0 120.1 0.0 -4,-1 0.0 7 -2.0 MINOR ENSMUSG00000026728 Vim ENSMUST00000193675 ENSMUSP00000141494 TRANSLATION protein_coding - - 5 427.0 0.0 6.15 4.1 454.5 0.0 -4,-1 0.5963 36 9.068 ALTERNATIVE:2 ENSMUSG00000026728 Vim ENSMUST00000028062 ENSMUSP00000028062 TRANSLATION protein_coding - CCDS15696.1 1 466.0 0.0 6.15 6.8 454.5 0.0 -4,-1 1.0 40 10.0 PRINCIPAL:2 ENSMUSG00000026728 Vim ENSMUST00000191615 - NO_TRANSLATION retained_intron ENSMUSG00000026728 Vim ENSMUST00000148248 - NO_TRANSLATION retained_intron ENSMUSG00000026946 Nmi ENSMUST00000028314 ENSMUSP00000028314 TRANSLATION protein_coding - CCDS16031.1 1 314.0 0.0 0.0 0.0 336.2 0.0 -4,-5 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000026946 Nmi ENSMUST00000145481 ENSMUSP00000120647 TRANSLATION protein_coding - CCDS16031.1 1 314.0 0.0 0.0 0.0 336.2 0.0 -4,-5 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000026946 Nmi ENSMUST00000145656 ENSMUSP00000122318 TRANSLATION protein_coding stop - 5 75.0 0.0 0.0 0.0 71.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026946 Nmi ENSMUST00000123521 - NO_TRANSLATION retained_intron ENSMUSG00000026946 Nmi ENSMUST00000142868 ENSMUSP00000115428 TRANSLATION protein_coding start - 3 66.0 0.0 0.0 0.0 31.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026946 Nmi ENSMUST00000112705 ENSMUSP00000108325 TRANSLATION protein_coding - CCDS16031.1 1 314.0 0.0 0.0 0.0 336.2 0.0 -4,-5 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000027288 Zfp106 ENSMUST00000152347 ENSMUSP00000132902 TRANSLATION protein_coding start/stop - 5 264.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000027288 Zfp106 ENSMUST00000167241 ENSMUSP00000127803 TRANSLATION protein_coding start/stop - 3 168.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000027288 Zfp106 ENSMUST00000141874 - NO_TRANSLATION retained_intron ENSMUSG00000027288 Zfp106 ENSMUST00000147353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027288 Zfp106 ENSMUST00000149210 - NO_TRANSLATION retained_intron ENSMUSG00000027288 Zfp106 ENSMUST00000171215 ENSMUSP00000128995 TRANSLATION protein_coding - - 5 1865.0 3.0 4.275 0.0 35.6 0.0 -4,-5 0.3568 21 14.574 MINOR ENSMUSG00000027288 Zfp106 ENSMUST00000163384 ENSMUSP00000128291 TRANSLATION nonsense_mediated_decay start - 2 163.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 3 -2.0 MINOR ENSMUSG00000027288 Zfp106 ENSMUST00000055241 ENSMUSP00000055602 TRANSLATION protein_coding - CCDS16621.1 5 1888.0 7.0 4.275 0.0 35.6 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000027288 Zfp106 ENSMUST00000139942 - NO_TRANSLATION retained_intron ENSMUSG00000027288 Zfp106 ENSMUST00000135625 ENSMUSP00000126939 TRANSLATION protein_coding stop - 2 151.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000027288 Zfp106 ENSMUST00000130303 - NO_TRANSLATION retained_intron ENSMUSG00000038628 Polr3k ENSMUST00000039551 ENSMUSP00000044582 TRANSLATION protein_coding - CCDS17225.1 1 108.0 8.0 3.0 35.1 107.9 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000038628 Polr3k ENSMUST00000153214 - NO_TRANSLATION retained_intron ENSMUSG00000048550 Thnsl1 ENSMUST00000102951 ENSMUSP00000100016 TRANSLATION protein_coding - CCDS15721.1 1 226.0 0.0 0.92 0.0 0.0 0.0 -4,-7 0.0197 5 4.452 MINOR ENSMUSG00000048550 Thnsl1 ENSMUST00000138965 ENSMUSP00000115186 TRANSLATION protein_coding stop - 3 93.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000048550 Thnsl1 ENSMUST00000054591 ENSMUSP00000052452 TRANSLATION protein_coding - CCDS15720.1 1 747.0 10.0 1.24 13.2 177.5 0.0 -4,-2 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000048550 Thnsl1 ENSMUST00000102952 ENSMUSP00000100017 TRANSLATION protein_coding - CCDS15721.1 1 226.0 0.0 0.92 0.0 0.0 0.0 -4,-7 0.0197 5 4.452 MINOR ENSMUSG00000048550 Thnsl1 ENSMUST00000138914 ENSMUSP00000119940 TRANSLATION protein_coding stop - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000051817 Sox12 ENSMUST00000182625 ENSMUSP00000138293 TRANSLATION protein_coding - CCDS38274.1 - 314.0 0.0 0.5 6.4 87.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000037813 D630003M21Rik ENSMUST00000103121 ENSMUSP00000099410 TRANSLATION protein_coding - CCDS50785.1 1 1106.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.5008 3 6.0 ALTERNATIVE:2 ENSMUSG00000037813 D630003M21Rik ENSMUST00000169335 ENSMUSP00000130623 TRANSLATION protein_coding - CCDS50785.1 5 1106.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.5008 3 6.0 ALTERNATIVE:2 ENSMUSG00000037813 D630003M21Rik ENSMUST00000046944 ENSMUSP00000040546 TRANSLATION protein_coding - CCDS16986.1 1 1187.0 0.0 0.8 0.0 0.0 0.0 -4,-6 1.0 3 6.0 PRINCIPAL:2 ENSMUSG00000035033 Tbr1 ENSMUST00000136867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035033 Tbr1 ENSMUST00000048934 ENSMUSP00000046787 TRANSLATION protein_coding - CCDS16063.1 1 681.0 0.0 3.75 19.0 557.0 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000035033 Tbr1 ENSMUST00000102737 ENSMUSP00000099798 TRANSLATION protein_coding - - 2 418.0 0.0 2.75 0.0 453.7 0.0 -4,-7 0.0 7 4.002 MINOR ENSMUSG00000035033 Tbr1 ENSMUST00000131538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000083361 Or12k7 ENSMUST00000120704 ENSMUSP00000114121 TRANSLATION protein_coding - CCDS15992.1 - 317.0 0.0 1.0 0.8 153.8 4.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000083361 Or12k7 ENSMUST00000216706 ENSMUSP00000149581 TRANSLATION protein_coding - CCDS15992.1 5 317.0 0.0 1.0 0.8 153.8 4.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000001823 Hoxd12 ENSMUST00000001878 ENSMUSP00000001878 TRANSLATION protein_coding - CCDS38147.1 1 268.0 0.0 1.0 13.4 67.2 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000017144 Rnd3 ENSMUST00000154545 ENSMUSP00000128831 TRANSLATION protein_coding - - 1 202.0 17.0 4.0 0.0 123.5 0.0 -4,-6 0.0 4 12.828 MINOR ENSMUSG00000017144 Rnd3 ENSMUST00000140864 - NO_TRANSLATION retained_intron ENSMUSG00000017144 Rnd3 ENSMUST00000017288 ENSMUSP00000017288 TRANSLATION protein_coding - CCDS16028.1 1 244.0 20.0 4.8 34.9 149.7 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000056436 Cyct ENSMUST00000028430 ENSMUSP00000028430 TRANSLATION protein_coding - CCDS16156.1 1 105.0 27.0 2.0 36.9 0.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036924 Cst13 ENSMUST00000046589 ENSMUSP00000036005 TRANSLATION protein_coding - CCDS16849.1 1 141.0 0.0 2.75 7.8 61.1 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000027397 Slc20a1 ENSMUST00000110315 ENSMUSP00000105944 TRANSLATION protein_coding - CCDS16722.1 1 681.0 0.0 2.29 5.4 458.5 8.0 -3,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000027397 Slc20a1 ENSMUST00000144744 - NO_TRANSLATION retained_intron ENSMUSG00000027397 Slc20a1 ENSMUST00000125714 - NO_TRANSLATION retained_intron ENSMUSG00000027397 Slc20a1 ENSMUST00000148988 ENSMUSP00000121074 TRANSLATION protein_coding stop - 3 32.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000027397 Slc20a1 ENSMUST00000140907 - NO_TRANSLATION retained_intron ENSMUSG00000027397 Slc20a1 ENSMUST00000028880 ENSMUSP00000028880 TRANSLATION protein_coding - CCDS16722.1 1 681.0 0.0 2.29 5.4 458.5 8.0 -3,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000027397 Slc20a1 ENSMUST00000141285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027397 Slc20a1 ENSMUST00000144025 - NO_TRANSLATION retained_intron ENSMUSG00000000305 Cdh4 ENSMUST00000129659 - NO_TRANSLATION retained_intron ENSMUSG00000000305 Cdh4 ENSMUST00000124708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000305 Cdh4 ENSMUST00000136411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000305 Cdh4 ENSMUST00000000314 ENSMUSP00000000314 TRANSLATION protein_coding - CCDS17164.1 1 913.0 54.0 11.04 5.6 510.1 0.0 2,-2 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000000305 Cdh4 ENSMUST00000098996 ENSMUSP00000096594 TRANSLATION protein_coding start/stop - 5 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000305 Cdh4 ENSMUST00000108911 ENSMUSP00000104539 TRANSLATION protein_coding - CCDS84598.1 1 334.0 11.0 3.32 0.0 143.3 0.0 2,-2 0.0186 5 0.0 MINOR ENSMUSG00000075307 Klhl41 ENSMUST00000100050 ENSMUSP00000097627 TRANSLATION protein_coding - CCDS38136.1 1 606.0 0.0 5.4 26.1 316.0 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000059625 Sohlh1 ENSMUST00000076989 ENSMUSP00000076253 TRANSLATION protein_coding - CCDS15793.1 1 357.0 0.0 1.2 0.1 22.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037482 Erv3 ENSMUST00000040941 ENSMUSP00000047030 TRANSLATION protein_coding - CCDS50726.1 1 200.0 0.0 1.0 0.1 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068615 Gjd2 ENSMUST00000090275 ENSMUSP00000087742 TRANSLATION protein_coding - CCDS16563.1 1 321.0 0.0 0.8 9.3 309.5 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000034701 Neurod1 ENSMUST00000041099 ENSMUSP00000040364 TRANSLATION protein_coding - CCDS16169.1 1 357.0 0.0 0.5 17.5 211.2 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000075189 Or8k53 ENSMUST00000099894 ENSMUSP00000097479 TRANSLATION protein_coding - CCDS84544.1 5 346.0 0.0 1.0 0.0 163.7 5.0 -4,-5 0.8536 - 12.0 PRINCIPAL:1 ENSMUSG00000075189 Or8k53 ENSMUST00000213564 ENSMUSP00000149219 TRANSLATION protein_coding - CCDS84544.1 5 346.0 0.0 1.0 0.0 163.7 5.0 -4,-5 0.8536 - 12.0 PRINCIPAL:1 ENSMUSG00000075189 Or8k53 ENSMUST00000188023 ENSMUSP00000140847 TRANSLATION protein_coding stop - - 313.0 0.0 1.0 11.0 163.7 5.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000079466 Prdm12 ENSMUST00000113470 ENSMUSP00000109098 TRANSLATION protein_coding - CCDS50562.1 5 365.0 11.0 2.5 2.1 45.2 0.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000026977 Marchf7 ENSMUST00000142485 ENSMUSP00000116925 TRANSLATION protein_coding start - 2 161.0 8.0 3.5 0.0 59.3 0.0 -4,-5 0.0281 1 -2.0 MINOR ENSMUSG00000026977 Marchf7 ENSMUST00000134905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026977 Marchf7 ENSMUST00000136367 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026977 Marchf7 ENSMUST00000102747 ENSMUSP00000099808 TRANSLATION protein_coding - CCDS16057.1 1 693.0 8.0 3.5 0.1 59.3 0.0 -4,-1 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000026977 Marchf7 ENSMUST00000102748 ENSMUSP00000099809 TRANSLATION protein_coding - CCDS16057.1 1 693.0 8.0 3.5 0.1 59.3 0.0 -4,-1 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000026977 Marchf7 ENSMUST00000131813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026977 Marchf7 ENSMUST00000067542 ENSMUSP00000068961 TRANSLATION protein_coding - CCDS16057.1 1 693.0 8.0 3.5 0.1 59.3 0.0 -4,-1 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000026977 Marchf7 ENSMUST00000126986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026977 Marchf7 ENSMUST00000143806 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074797 Itpa ENSMUST00000138963 - NO_TRANSLATION retained_intron ENSMUSG00000074797 Itpa ENSMUST00000126714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074797 Itpa ENSMUST00000133328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074797 Itpa ENSMUST00000156382 - NO_TRANSLATION retained_intron ENSMUSG00000074797 Itpa ENSMUST00000103193 ENSMUSP00000099482 TRANSLATION protein_coding - CCDS16748.1 1 198.0 17.0 6.08 0.4 187.0 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000026858 Miga2 ENSMUST00000135841 - NO_TRANSLATION retained_intron ENSMUSG00000026858 Miga2 ENSMUST00000077977 ENSMUSP00000077127 TRANSLATION protein_coding - CCDS15880.1 1 593.0 0.0 6.88 17.6 747.8 1.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000026858 Miga2 ENSMUST00000146308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026858 Miga2 ENSMUST00000137441 - NO_TRANSLATION retained_intron ENSMUSG00000026858 Miga2 ENSMUST00000116543 ENSMUSP00000135126 TRANSLATION protein_coding stop - 5 91.0 0.0 0.0 0.0 48.1 0.0 -4,-7 0.0004 1 -2.0 MINOR ENSMUSG00000026858 Miga2 ENSMUST00000142801 ENSMUSP00000118253 TRANSLATION protein_coding stop - 3 139.0 0.0 0.0 0.0 81.5 1.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026858 Miga2 ENSMUST00000125610 - NO_TRANSLATION retained_intron ENSMUSG00000026858 Miga2 ENSMUST00000175864 ENSMUSP00000135812 TRANSLATION protein_coding start/stop - 3 128.0 0.0 2.83 0.0 151.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026858 Miga2 ENSMUST00000140075 ENSMUSP00000135519 TRANSLATION protein_coding - - 1 443.0 0.0 2.3 0.0 364.0 1.0 -4,-5 0.0013 6 0.0 MINOR ENSMUSG00000026858 Miga2 ENSMUST00000100214 ENSMUSP00000097787 TRANSLATION protein_coding - CCDS15880.1 1 593.0 0.0 6.88 17.6 747.8 1.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000026858 Miga2 ENSMUST00000176517 ENSMUSP00000135644 TRANSLATION protein_coding start - 3 111.0 0.0 1.0 0.0 89.5 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000026858 Miga2 ENSMUST00000127410 - NO_TRANSLATION retained_intron ENSMUSG00000035513 Ntng2 ENSMUST00000147274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035513 Ntng2 ENSMUST00000071201 ENSMUSP00000071190 TRANSLATION protein_coding - - 5 430.0 5.0 3.0 0.0 199.6 0.0 4,-1 0.001 4 7.718 MINOR ENSMUSG00000035513 Ntng2 ENSMUST00000048455 ENSMUSP00000035468 TRANSLATION protein_coding - CCDS15852.1 1 589.0 5.0 5.016 0.0 257.9 0.0 4,-1 0.3557 7 13.0 ALTERNATIVE:2 ENSMUSG00000035513 Ntng2 ENSMUST00000149096 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035513 Ntng2 ENSMUST00000147897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035513 Ntng2 ENSMUST00000125765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035513 Ntng2 ENSMUST00000102873 ENSMUSP00000099937 TRANSLATION protein_coding - CCDS15851.1 1 530.0 5.0 4.896 2.1 257.9 0.0 4,-1 1.0 7 13.76 PRINCIPAL:2 ENSMUSG00000035513 Ntng2 ENSMUST00000091153 ENSMUSP00000088688 TRANSLATION protein_coding - CCDS84499.1 1 564.0 5.0 4.896 0.1 257.9 0.0 4,-1 0.3686 7 12.76 ALTERNATIVE:2 ENSMUSG00000035513 Ntng2 ENSMUST00000183583 ENSMUSP00000139034 TRANSLATION nonsense_mediated_decay - - 5 368.0 5.0 3.0 0.0 199.6 0.0 4,-1 0.001 4 -2.0 MINOR ENSMUSG00000035513 Ntng2 ENSMUST00000143194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036893 Ehmt1 ENSMUST00000152161 ENSMUSP00000119854 TRANSLATION protein_coding stop - 5 362.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0017 2 -2.0 MINOR ENSMUSG00000036893 Ehmt1 ENSMUST00000198923 ENSMUSP00000143189 TRANSLATION protein_coding start/stop - 3 254.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0011 - -2.0 MINOR ENSMUSG00000036893 Ehmt1 ENSMUST00000147147 ENSMUSP00000119057 TRANSLATION protein_coding - CCDS15740.1 1 1296.0 32.0 16.71 1.4 287.5 0.0 -4,-5 1.0 16 15.0 PRINCIPAL:2 ENSMUSG00000036893 Ehmt1 ENSMUST00000150836 ENSMUSP00000141912 TRANSLATION nonsense_mediated_decay start - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000036893 Ehmt1 ENSMUST00000144672 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036893 Ehmt1 ENSMUST00000134775 ENSMUSP00000141940 TRANSLATION nonsense_mediated_decay start - 1 107.0 0.0 2.33 0.0 46.5 0.0 -3,-6 0.0 3 -2.0 MINOR ENSMUSG00000036893 Ehmt1 ENSMUST00000046227 ENSMUSP00000046077 TRANSLATION protein_coding - CCDS59636.1 5 1248.0 32.0 15.71 0.0 287.5 0.0 -4,-5 0.3444 15 12.002 MINOR ENSMUSG00000036893 Ehmt1 ENSMUST00000102938 ENSMUSP00000100002 TRANSLATION protein_coding - CCDS59635.1 1 1289.0 32.0 16.71 0.3 287.5 0.0 -4,-5 0.6713 15 14.0 ALTERNATIVE:2 ENSMUSG00000036893 Ehmt1 ENSMUST00000139000 - NO_TRANSLATION retained_intron ENSMUSG00000036893 Ehmt1 ENSMUST00000152325 ENSMUSP00000123387 TRANSLATION protein_coding start/stop - 3 224.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0011 2 -2.0 MINOR ENSMUSG00000036893 Ehmt1 ENSMUST00000200655 ENSMUSP00000142861 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036893 Ehmt1 ENSMUST00000207383 ENSMUSP00000146832 TRANSLATION protein_coding start/stop - 5 232.0 0.0 0.78 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000036893 Ehmt1 ENSMUST00000138805 - NO_TRANSLATION retained_intron ENSMUSG00000036893 Ehmt1 ENSMUST00000114432 ENSMUSP00000110075 TRANSLATION protein_coding - CCDS59634.1 5 1243.0 32.0 16.71 0.0 287.5 0.0 -4,-5 0.48 15 14.0 ALTERNATIVE:2 ENSMUSG00000036893 Ehmt1 ENSMUST00000091348 ENSMUSP00000088906 TRANSLATION protein_coding - - 5 1288.0 32.0 16.71 0.3 287.5 0.0 -4,-5 0.4782 15 14.0 ALTERNATIVE:2 ENSMUSG00000036893 Ehmt1 ENSMUST00000150379 ENSMUSP00000123187 TRANSLATION protein_coding stop - 1 286.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0017 1 -2.0 MINOR ENSMUSG00000036893 Ehmt1 ENSMUST00000152636 ENSMUSP00000141460 TRANSLATION nonsense_mediated_decay start - 3 203.0 0.0 3.88 0.0 60.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000090097 Or4p21 ENSMUST00000126038 ENSMUSP00000148855 TRANSLATION protein_coding - CCDS16336.1 3 305.0 0.0 1.0 9.6 167.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000090097 Or4p21 ENSMUST00000179450 ENSMUSP00000136580 TRANSLATION protein_coding - CCDS16336.1 2 305.0 0.0 1.0 9.6 167.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045624 Esf1 ENSMUST00000137005 - NO_TRANSLATION retained_intron ENSMUSG00000045624 Esf1 ENSMUST00000046030 ENSMUSP00000036523 TRANSLATION protein_coding - CCDS38250.1 1 845.0 0.0 2.56 0.1 44.4 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000045624 Esf1 ENSMUST00000141086 - NO_TRANSLATION retained_intron ENSMUSG00000045624 Esf1 ENSMUST00000153769 - NO_TRANSLATION retained_intron ENSMUSG00000045624 Esf1 ENSMUST00000151317 - NO_TRANSLATION retained_intron ENSMUSG00000027544 Nfatc2 ENSMUST00000137451 ENSMUSP00000118329 TRANSLATION protein_coding - CCDS71201.1 1 653.0 0.0 4.0 0.1 79.5 0.0 -4,-2 0.007 11 3.0 MINOR ENSMUSG00000027544 Nfatc2 ENSMUST00000099067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027544 Nfatc2 ENSMUST00000029057 ENSMUSP00000029057 TRANSLATION protein_coding - CCDS17113.1 1 673.0 0.0 4.0 0.1 79.5 0.0 -4,-5 0.0094 11 3.0 MINOR ENSMUSG00000027544 Nfatc2 ENSMUST00000151292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027544 Nfatc2 ENSMUST00000171689 ENSMUSP00000130875 TRANSLATION protein_coding - CCDS17114.1 1 452.0 0.0 4.0 0.0 79.5 0.0 -4,-2 0.0035 7 3.0 MINOR ENSMUSG00000027544 Nfatc2 ENSMUST00000140137 - NO_TRANSLATION retained_intron ENSMUSG00000027544 Nfatc2 ENSMUST00000109184 ENSMUSP00000104812 TRANSLATION protein_coding - CCDS50803.1 1 923.0 0.0 5.5 3.6 166.2 0.0 -4,-5 0.9385 18 9.0 ALTERNATIVE:2 ENSMUSG00000027544 Nfatc2 ENSMUST00000138546 - NO_TRANSLATION retained_intron ENSMUSG00000027544 Nfatc2 ENSMUST00000074618 ENSMUSP00000074198 TRANSLATION protein_coding - CCDS17112.1 1 927.0 0.0 5.5 3.6 166.2 0.0 -4,-5 1.0 18 9.0 PRINCIPAL:4 ENSMUSG00000027445 Cst9 ENSMUST00000028935 ENSMUSP00000028935 TRANSLATION protein_coding - CCDS16850.1 1 137.0 0.0 2.55 1.1 35.9 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026972 Arrdc1 ENSMUST00000144963 ENSMUSP00000114684 TRANSLATION nonsense_mediated_decay - - 3 60.0 0.0 1.83 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026972 Arrdc1 ENSMUST00000155953 - NO_TRANSLATION retained_intron ENSMUSG00000026972 Arrdc1 ENSMUST00000102935 ENSMUSP00000099999 TRANSLATION protein_coding - CCDS15741.1 1 433.0 0.0 7.02 5.1 109.9 0.0 -4,-7 0.9486 6 10.0 ALTERNATIVE:1 ENSMUSG00000026972 Arrdc1 ENSMUST00000155525 - NO_TRANSLATION retained_intron ENSMUSG00000026972 Arrdc1 ENSMUST00000132074 ENSMUSP00000116352 TRANSLATION protein_coding start/stop - 5 84.0 0.0 2.49 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026972 Arrdc1 ENSMUST00000156706 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026972 Arrdc1 ENSMUST00000133396 - NO_TRANSLATION retained_intron ENSMUSG00000026972 Arrdc1 ENSMUST00000142887 ENSMUSP00000117372 TRANSLATION nonsense_mediated_decay start - 3 108.0 0.0 2.78 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000026972 Arrdc1 ENSMUST00000028349 ENSMUSP00000028349 TRANSLATION protein_coding - CCDS50521.1 1 434.0 0.0 7.02 5.1 119.2 0.0 -4,-7 1.0 8 10.0 PRINCIPAL:3 ENSMUSG00000026972 Arrdc1 ENSMUST00000129784 - NO_TRANSLATION retained_intron ENSMUSG00000026972 Arrdc1 ENSMUST00000133934 ENSMUSP00000117695 TRANSLATION protein_coding stop - 2 211.0 0.0 5.32 0.0 82.9 0.0 -4,-2 0.0 7 -2.0 MINOR ENSMUSG00000026972 Arrdc1 ENSMUST00000152240 - NO_TRANSLATION retained_intron ENSMUSG00000086338 Or8h6 ENSMUST00000130722 ENSMUSP00000150854 TRANSLATION protein_coding - - 2 315.0 0.0 1.0 9.9 172.8 0.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075064 Or4x15 ENSMUST00000213994 ENSMUSP00000149370 TRANSLATION protein_coding - CCDS16409.1 3 309.0 0.0 1.0 11.8 169.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075064 Or4x15 ENSMUST00000215571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043267 Or5m8 ENSMUST00000216807 ENSMUSP00000149225 TRANSLATION protein_coding - CCDS16232.1 5 336.0 0.0 1.0 0.0 187.5 6.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043267 Or5m8 ENSMUST00000050942 ENSMUSP00000059256 TRANSLATION protein_coding - CCDS16232.1 - 336.0 0.0 1.0 0.0 187.5 6.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027602 Map1lc3a ENSMUST00000145086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027602 Map1lc3a ENSMUST00000154596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027602 Map1lc3a ENSMUST00000029128 ENSMUSP00000029128 TRANSLATION protein_coding - CCDS16945.1 1 121.0 0.0 3.0 32.1 148.1 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000095362 Gm14325 ENSMUST00000188914 ENSMUSP00000140685 TRANSLATION protein_coding start - 5 497.0 59.0 2.75 0.4 398.3 0.0 -4,-5 0.4597 - -2.0 MINOR ENSMUSG00000095362 Gm14325 ENSMUST00000108939 ENSMUSP00000104567 TRANSLATION protein_coding - CCDS71209.1 2 498.0 59.0 2.75 0.4 398.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095362 Gm14325 ENSMUST00000150650 ENSMUSP00000118192 TRANSLATION protein_coding - - 2 70.0 0.0 1.75 0.0 77.5 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000078867 Gm14418 ENSMUST00000128657 ENSMUSP00000116617 TRANSLATION protein_coding - - 5 358.0 38.0 4.25 0.0 253.3 0.0 -4,-5 0.7965 - 18.0 PRINCIPAL:1 ENSMUSG00000078867 Gm14418 ENSMUST00000149689 ENSMUSP00000159716 TRANSLATION protein_coding stop - 2 68.0 3.0 2.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078867 Gm14418 ENSMUST00000249358 ENSMUSP00000159715 TRANSLATION protein_coding - - - 326.0 38.0 3.25 0.3 175.3 0.0 -4,-5 0.0545 - 11.322 MINOR ENSMUSG00000078867 Gm14418 ENSMUST00000108955 ENSMUSP00000104583 TRANSLATION protein_coding - - 1 64.0 0.0 2.25 0.4 78.1 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000027514 Zbp1 ENSMUST00000029018 ENSMUSP00000029018 TRANSLATION protein_coding - CCDS17142.1 1 411.0 0.0 2.0 0.0 82.7 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000027514 Zbp1 ENSMUST00000109116 ENSMUSP00000104744 TRANSLATION protein_coding - CCDS50813.1 1 187.0 0.0 2.0 0.0 49.4 0.0 -4,-5 0.1493 6 9.582 MINOR ENSMUSG00000027514 Zbp1 ENSMUST00000146802 - NO_TRANSLATION retained_intron ENSMUSG00000070531 Wfdc6b ENSMUST00000094346 ENSMUSP00000091906 TRANSLATION protein_coding - CCDS17046.2 1 148.0 0.0 2.0 0.1 101.3 0.0 1,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000027643 Ghrh ENSMUST00000126630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027643 Ghrh ENSMUST00000109536 ENSMUSP00000105162 TRANSLATION protein_coding - CCDS16976.1 1 103.0 0.0 2.5 0.1 45.6 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000027643 Ghrh ENSMUST00000029172 ENSMUSP00000029172 TRANSLATION protein_coding - CCDS16976.1 1 103.0 0.0 2.5 0.1 45.6 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000034216 Vps18 ENSMUST00000151500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034216 Vps18 ENSMUST00000037280 ENSMUSP00000036915 TRANSLATION protein_coding - CCDS16599.1 1 973.0 4.0 0.0 24.9 164.1 0.0 -4,-5 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000034216 Vps18 ENSMUST00000139367 - NO_TRANSLATION retained_intron ENSMUSG00000074881 Mageb3 ENSMUST00000104936 ENSMUSP00000100541 TRANSLATION protein_coding - CCDS16651.1 - 330.0 0.0 0.6 0.0 24.5 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055312 Them7 ENSMUST00000068813 ENSMUSP00000063340 TRANSLATION protein_coding - CCDS38191.1 1 223.0 0.0 2.0 0.0 43.1 0.0 -4,0 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000055312 Them7 ENSMUST00000131060 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078869 Gm14409 ENSMUST00000108963 ENSMUSP00000104591 TRANSLATION protein_coding - - 5 381.0 37.0 1.3 0.0 244.4 0.0 -4,-5 0.8166 - 18.0 PRINCIPAL:1 ENSMUSG00000070533 Wfdc8 ENSMUST00000109339 ENSMUSP00000104963 TRANSLATION protein_coding - CCDS71191.1 1 426.0 0.0 3.25 0.0 143.4 0.0 -4,-1 0.0286 - 8.496 MINOR ENSMUSG00000070533 Wfdc8 ENSMUST00000094351 ENSMUSP00000091911 TRANSLATION protein_coding - CCDS71192.1 1 264.0 0.0 3.25 0.0 143.4 0.0 -4,-1 0.1089 - 8.496 MINOR ENSMUSG00000070533 Wfdc8 ENSMUST00000109338 ENSMUSP00000104962 TRANSLATION protein_coding - CCDS38324.1 1 273.0 0.0 4.1 0.0 173.5 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027016 Zfp385b ENSMUST00000111830 ENSMUSP00000107461 TRANSLATION protein_coding - CCDS50611.1 1 368.0 12.0 0.0 8.7 80.7 0.0 -4,-5 0.8761 5 10.137 MINOR ENSMUSG00000027016 Zfp385b ENSMUST00000128583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027016 Zfp385b ENSMUST00000151388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027016 Zfp385b ENSMUST00000145251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027016 Zfp385b ENSMUST00000171063 ENSMUSP00000126801 TRANSLATION protein_coding - CCDS50612.1 5 394.0 12.0 0.0 9.8 80.7 0.0 -4,-1 1.0 5 10.512 MINOR ENSMUSG00000027016 Zfp385b ENSMUST00000129077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027016 Zfp385b ENSMUST00000111829 ENSMUSP00000107460 TRANSLATION protein_coding - - 5 111.0 4.0 0.0 0.0 30.4 0.0 -4,-6 0.0 - 1.158 MINOR ENSMUSG00000027016 Zfp385b ENSMUST00000111831 ENSMUSP00000107462 TRANSLATION protein_coding - CCDS16164.1 1 482.0 16.0 0.0 2.4 111.1 0.0 -4,-6 0.9405 5 12.477 PRINCIPAL:1 ENSMUSG00000027016 Zfp385b ENSMUST00000135756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027016 Zfp385b ENSMUST00000137160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027016 Zfp385b ENSMUST00000090766 ENSMUSP00000088271 TRANSLATION protein_coding - CCDS16164.1 1 482.0 16.0 0.0 2.4 111.1 0.0 -4,-6 0.9405 5 12.477 PRINCIPAL:1 ENSMUSG00000026737 Pip4k2a ENSMUST00000148583 ENSMUSP00000115475 TRANSLATION protein_coding start - 5 83.0 0.0 1.0 0.0 26.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026737 Pip4k2a ENSMUST00000006912 ENSMUSP00000006912 TRANSLATION protein_coding - CCDS15712.1 1 405.0 4.0 7.51 21.8 254.3 0.0 -4,-7 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000026737 Pip4k2a ENSMUST00000152981 ENSMUSP00000119075 TRANSLATION protein_coding start/stop - 3 214.0 4.0 4.0 0.0 155.9 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000039725 Trp53rka ENSMUST00000125497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039725 Trp53rka ENSMUST00000039007 ENSMUSP00000045141 TRANSLATION protein_coding - CCDS17082.1 1 244.0 2.0 2.0 0.7 32.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027247 Arhgap1 ENSMUST00000111330 ENSMUSP00000106962 TRANSLATION protein_coding - CCDS16437.1 1 439.0 0.0 8.3 20.0 291.7 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000027247 Arhgap1 ENSMUST00000141012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027247 Arhgap1 ENSMUST00000111331 ENSMUSP00000106963 TRANSLATION protein_coding - CCDS50641.1 1 479.0 0.0 8.3 0.0 291.7 0.0 -4,-5 0.1403 13 12.0 MINOR ENSMUSG00000027247 Arhgap1 ENSMUST00000139314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027247 Arhgap1 ENSMUST00000149426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027247 Arhgap1 ENSMUST00000154468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027247 Arhgap1 ENSMUST00000090614 ENSMUSP00000088105 TRANSLATION protein_coding - CCDS16437.1 1 439.0 0.0 8.3 20.0 291.7 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000027247 Arhgap1 ENSMUST00000111329 ENSMUSP00000106961 TRANSLATION protein_coding - CCDS16437.1 1 439.0 0.0 8.3 20.0 291.7 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000027247 Arhgap1 ENSMUST00000123702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042821 Snai1 ENSMUST00000052631 ENSMUSP00000050581 TRANSLATION protein_coding - CCDS17102.1 1 264.0 15.0 1.5 10.3 68.4 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000027122 Arl14ep ENSMUST00000146961 - NO_TRANSLATION retained_intron ENSMUSG00000027122 Arl14ep ENSMUST00000124598 - NO_TRANSLATION retained_intron ENSMUSG00000027122 Arl14ep ENSMUST00000093883 ENSMUSP00000091409 TRANSLATION protein_coding - CCDS16503.1 1 276.0 3.0 1.28 0.4 124.3 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000027122 Arl14ep ENSMUST00000028536 ENSMUSP00000028536 TRANSLATION protein_coding - CCDS16503.1 1 276.0 3.0 1.28 0.4 124.3 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000026664 Phyh ENSMUST00000146933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026664 Phyh ENSMUST00000128738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026664 Phyh ENSMUST00000027975 ENSMUSP00000027975 TRANSLATION protein_coding - CCDS15660.1 1 338.0 9.0 6.4 19.7 165.9 0.0 -3,1 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000026860 Sh3glb2 ENSMUST00000113621 ENSMUSP00000109251 TRANSLATION protein_coding - CCDS84504.1 5 404.0 0.0 7.2995 7.9 267.0 0.0 -4,-5 0.8577 14 9.291 ALTERNATIVE:1 ENSMUSG00000026860 Sh3glb2 ENSMUST00000146400 - NO_TRANSLATION retained_intron ENSMUSG00000026860 Sh3glb2 ENSMUST00000100215 ENSMUSP00000097788 TRANSLATION protein_coding - CCDS71020.1 1 400.0 0.0 7.2995 7.9 268.5 0.0 -4,-5 0.8661 14 9.291 ALTERNATIVE:1 ENSMUSG00000026860 Sh3glb2 ENSMUST00000113620 ENSMUSP00000109250 TRANSLATION protein_coding - CCDS71018.1 1 374.0 0.0 7.25 5.7 274.7 0.0 -4,-5 0.8729 13 9.323 MINOR ENSMUSG00000026860 Sh3glb2 ENSMUST00000151145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026860 Sh3glb2 ENSMUST00000140899 - NO_TRANSLATION retained_intron ENSMUSG00000026860 Sh3glb2 ENSMUST00000151354 - NO_TRANSLATION retained_intron ENSMUSG00000026860 Sh3glb2 ENSMUST00000163668 ENSMUSP00000131545 TRANSLATION protein_coding - - 5 379.0 0.0 7.25 7.9 274.7 0.0 -4,-5 0.7685 13 9.989 ALTERNATIVE:1 ENSMUSG00000026860 Sh3glb2 ENSMUST00000028214 ENSMUSP00000028214 TRANSLATION protein_coding - CCDS15879.1 1 395.0 0.0 7.2995 10.9 268.5 0.0 -4,-5 1.0 14 10.2 PRINCIPAL:4 ENSMUSG00000026860 Sh3glb2 ENSMUST00000139963 - NO_TRANSLATION retained_intron ENSMUSG00000026860 Sh3glb2 ENSMUST00000140801 - NO_TRANSLATION retained_intron ENSMUSG00000026860 Sh3glb2 ENSMUST00000142689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026860 Sh3glb2 ENSMUST00000128387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026860 Sh3glb2 ENSMUST00000142720 - NO_TRANSLATION retained_intron ENSMUSG00000004113 Cacna1b ENSMUST00000114447 ENSMUSP00000110090 TRANSLATION protein_coding - - 5 2328.0 0.0 21.968 0.4 1074.3 12.0 -4,-5 0.708 26 7.754 ALTERNATIVE:2 ENSMUSG00000004113 Cacna1b ENSMUST00000070864 ENSMUSP00000063236 TRANSLATION protein_coding - CCDS15739.1 5 2288.0 0.0 21.34 0.0 997.6 11.0 -4,-5 0.537 24 5.642 MINOR ENSMUSG00000004113 Cacna1b ENSMUST00000102939 ENSMUSP00000100003 TRANSLATION protein_coding - - 5 2325.0 0.0 22.09 0.1 1075.9 11.0 -4,-5 0.8227 26 8.0 ALTERNATIVE:2 ENSMUSG00000004113 Cacna1b ENSMUST00000133892 ENSMUSP00000115285 TRANSLATION protein_coding start/stop - 3 228.0 0.0 1.45 0.0 63.7 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000004113 Cacna1b ENSMUST00000155356 ENSMUSP00000116674 TRANSLATION protein_coding start/stop - 5 111.0 0.0 2.8 0.0 124.9 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000004113 Cacna1b ENSMUST00000124183 ENSMUSP00000114605 TRANSLATION protein_coding start/stop - 5 102.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004113 Cacna1b ENSMUST00000041342 ENSMUSP00000037416 TRANSLATION protein_coding - CCDS38065.1 1 2327.0 0.0 22.09 0.4 1074.3 12.0 -4,-5 1.0 26 8.0 PRINCIPAL:4 ENSMUSG00000004113 Cacna1b ENSMUST00000125798 ENSMUSP00000141767 TRANSLATION nonsense_mediated_decay start - 5 114.0 0.0 2.0 0.0 119.6 2.0 -1,-4 0.0 1 -2.0 MINOR ENSMUSG00000004113 Cacna1b ENSMUST00000131861 ENSMUSP00000141653 TRANSLATION protein_coding start - 5 168.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000048707 Tprn ENSMUST00000155738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048707 Tprn ENSMUST00000141509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048707 Tprn ENSMUST00000114336 ENSMUSP00000109975 TRANSLATION protein_coding - CCDS15759.2 1 749.0 0.0 0.0 0.1 324.5 0.0 -4,-2 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000048707 Tprn ENSMUST00000137361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027403 Tgm6 ENSMUST00000147616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027403 Tgm6 ENSMUST00000028888 ENSMUSP00000028888 TRANSLATION protein_coding - CCDS16734.1 1 706.0 11.0 10.08 3.5 306.8 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000027403 Tgm6 ENSMUST00000140947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033411 Ctdspl2 ENSMUST00000128883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033411 Ctdspl2 ENSMUST00000131258 - NO_TRANSLATION retained_intron ENSMUSG00000033411 Ctdspl2 ENSMUST00000110574 ENSMUSP00000106203 TRANSLATION protein_coding - CCDS16652.1 5 465.0 10.0 6.0 22.0 187.2 0.0 -4,-1 1.0 9 18.0 PRINCIPAL:3 ENSMUSG00000033411 Ctdspl2 ENSMUST00000110572 ENSMUSP00000106201 TRANSLATION protein_coding - - 5 394.0 10.0 6.0 1.1 187.2 0.0 -4,-1 0.1985 9 14.02 MINOR ENSMUSG00000033411 Ctdspl2 ENSMUST00000110578 ENSMUSP00000106207 TRANSLATION protein_coding - CCDS71130.1 1 464.0 10.0 6.0 22.0 187.2 0.0 -4,-2 0.9986 8 18.0 ALTERNATIVE:1 ENSMUSG00000033411 Ctdspl2 ENSMUST00000140570 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033411 Ctdspl2 ENSMUST00000127265 - NO_TRANSLATION retained_intron ENSMUSG00000033411 Ctdspl2 ENSMUST00000036647 ENSMUSP00000047543 TRANSLATION protein_coding - CCDS16652.1 1 465.0 10.0 6.0 22.0 187.2 0.0 -4,-1 1.0 9 18.0 PRINCIPAL:3 ENSMUSG00000033411 Ctdspl2 ENSMUST00000138920 - NO_TRANSLATION retained_intron ENSMUSG00000101391 Or4c112 ENSMUST00000214022 ENSMUSP00000149066 TRANSLATION protein_coding - CCDS16362.1 3 304.0 0.0 1.0 8.9 162.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101391 Or4c112 ENSMUST00000099799 ENSMUSP00000097387 TRANSLATION protein_coding - CCDS16362.1 - 304.0 0.0 1.0 8.9 162.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101391 Or4c112 ENSMUST00000216592 ENSMUSP00000149931 TRANSLATION protein_coding - CCDS16362.1 5 304.0 0.0 1.0 8.9 162.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101391 Or4c112 ENSMUST00000213669 ENSMUSP00000150715 TRANSLATION protein_coding - CCDS16362.1 5 304.0 0.0 1.0 8.9 162.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048911 Rnf24 ENSMUST00000165420 ENSMUSP00000129843 TRANSLATION protein_coding - CCDS16762.1 3 148.0 8.0 3.35 31.1 46.6 2.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000048911 Rnf24 ENSMUST00000142982 - NO_TRANSLATION retained_intron ENSMUSG00000048911 Rnf24 ENSMUST00000110194 ENSMUSP00000105823 TRANSLATION protein_coding - CCDS16762.1 1 148.0 8.0 3.35 31.1 46.6 2.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000048911 Rnf24 ENSMUST00000059372 ENSMUSP00000058630 TRANSLATION protein_coding - CCDS16762.1 1 148.0 8.0 3.35 31.1 46.6 2.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000048911 Rnf24 ENSMUST00000183902 ENSMUSP00000139130 TRANSLATION nonsense_mediated_decay - - 1 95.0 0.0 1.6 0.0 0.0 2.0 -4,-7 0.002 - -2.0 MINOR ENSMUSG00000068130 Zfp442 ENSMUST00000109916 ENSMUSP00000105542 TRANSLATION protein_coding - CCDS79853.1 1 667.0 70.0 1.0 0.0 413.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000023094 Msrb2 ENSMUST00000023856 ENSMUSP00000023856 TRANSLATION protein_coding - CCDS15714.1 1 175.0 8.0 3.75 3.3 169.9 0.0 -4,0 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000023094 Msrb2 ENSMUST00000137812 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023094 Msrb2 ENSMUST00000126894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023094 Msrb2 ENSMUST00000153289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068806 Or4c12 ENSMUST00000090695 ENSMUSP00000088194 TRANSLATION protein_coding - CCDS16398.1 - 309.0 0.0 1.0 12.5 151.7 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068806 Or4c12 ENSMUST00000214846 ENSMUSP00000149652 TRANSLATION protein_coding - CCDS16398.1 3 309.0 0.0 1.0 12.5 151.7 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037708 Spag6 ENSMUST00000173763 ENSMUSP00000133383 TRANSLATION protein_coding stop - 3 167.0 0.0 3.5 0.0 34.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037708 Spag6 ENSMUST00000095132 ENSMUSP00000092751 TRANSLATION protein_coding - CCDS38051.1 1 509.0 0.0 11.08 28.2 130.6 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000037708 Spag6 ENSMUST00000137796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037708 Spag6 ENSMUST00000138017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075324 Fign ENSMUST00000153538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075324 Fign ENSMUST00000131615 ENSMUSP00000122855 TRANSLATION protein_coding - CCDS16070.1 1 759.0 11.0 0.8 21.2 116.0 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000075324 Fign ENSMUST00000102728 ENSMUSP00000124338 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000075324 Fign ENSMUST00000126042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075113 Or4c29 ENSMUST00000213136 ENSMUSP00000150607 TRANSLATION protein_coding - CCDS16355.1 3 310.0 0.0 1.0 12.5 163.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075113 Or4c29 ENSMUST00000099809 ENSMUSP00000097397 TRANSLATION protein_coding - CCDS16355.1 - 310.0 0.0 1.0 12.5 163.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075113 Or4c29 ENSMUST00000213240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000081948 Or4s2 ENSMUST00000217379 ENSMUSP00000150078 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 13.8 170.1 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000081948 Or4s2 ENSMUST00000120598 ENSMUSP00000150282 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 13.8 170.1 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000015839 Nfe2l2 ENSMUST00000102672 ENSMUSP00000099733 TRANSLATION protein_coding - CCDS16150.1 1 597.0 0.0 0.9 0.4 56.9 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000015839 Nfe2l2 ENSMUST00000152371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027456 Sdcbp2 ENSMUST00000028950 ENSMUSP00000028950 TRANSLATION protein_coding - CCDS16870.1 1 292.0 0.0 4.3 20.9 66.9 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000038537 Mc3r ENSMUST00000038532 ENSMUSP00000047358 TRANSLATION protein_coding - CCDS17127.1 - 323.0 0.0 1.0 12.2 117.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075149 Or5w15 ENSMUST00000214573 ENSMUSP00000148941 TRANSLATION protein_coding - CCDS16305.1 5 311.0 0.0 1.0 14.5 153.6 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075149 Or5w15 ENSMUST00000099848 ENSMUSP00000097435 TRANSLATION protein_coding - CCDS16305.1 - 311.0 0.0 1.0 14.5 153.6 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074622 Mafb ENSMUST00000099126 ENSMUSP00000096728 TRANSLATION protein_coding - CCDS16994.1 - 323.0 0.0 0.6 8.9 196.3 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000016386 Mpped2 ENSMUST00000016530 ENSMUSP00000016530 TRANSLATION protein_coding - CCDS50654.1 1 294.0 15.0 6.83 33.9 43.9 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000016386 Mpped2 ENSMUST00000111063 ENSMUSP00000106692 TRANSLATION protein_coding - CCDS50654.1 1 294.0 15.0 6.83 33.9 43.9 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000016386 Mpped2 ENSMUST00000133401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016386 Mpped2 ENSMUST00000125023 ENSMUSP00000123267 TRANSLATION protein_coding stop - 5 283.0 15.0 6.5 0.0 43.9 0.0 -4,-5 0.0253 3 -2.0 MINOR ENSMUSG00000016386 Mpped2 ENSMUST00000124461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016386 Mpped2 ENSMUST00000144155 ENSMUSP00000114253 TRANSLATION protein_coding stop - 3 67.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000078420 Or5t18 ENSMUST00000216117 ENSMUSP00000150485 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 3.1 164.6 0.0 -4,-7 0.8745 - 13.0 PRINCIPAL:1 ENSMUSG00000051730 Mettl5 ENSMUST00000142127 ENSMUSP00000121474 TRANSLATION nonsense_mediated_decay - - 1 142.0 16.0 3.198 0.0 44.4 0.0 -4,-5 0.0074 2 -2.0 MINOR ENSMUSG00000051730 Mettl5 ENSMUST00000135487 - NO_TRANSLATION retained_intron ENSMUSG00000051730 Mettl5 ENSMUST00000060447 ENSMUSP00000050907 TRANSLATION protein_coding - CCDS16103.2 2 209.0 16.0 5.41 29.8 44.0 0.0 -4,-5 1.0 3 21.946 PRINCIPAL:1 ENSMUSG00000051730 Mettl5 ENSMUST00000135459 - NO_TRANSLATION retained_intron ENSMUSG00000026786 Apbb1ip ENSMUST00000014290 ENSMUSP00000014290 TRANSLATION protein_coding - CCDS38056.1 1 670.0 0.0 7.7 1.3 101.9 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000026786 Apbb1ip ENSMUST00000131195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026786 Apbb1ip ENSMUST00000148315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026786 Apbb1ip ENSMUST00000132993 - NO_TRANSLATION retained_intron ENSMUSG00000074595 Wfdc6a ENSMUST00000109342 ENSMUSP00000104966 TRANSLATION protein_coding - CCDS17042.1 3 136.0 0.0 2.0 0.4 100.0 0.0 1,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000074595 Wfdc6a ENSMUST00000099096 ENSMUSP00000096694 TRANSLATION protein_coding - CCDS17042.1 1 136.0 0.0 2.0 0.4 100.0 0.0 1,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000049315 Or1j19 ENSMUST00000214909 ENSMUSP00000150542 TRANSLATION protein_coding - CCDS15980.1 5 313.0 0.0 1.0 5.2 190.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049315 Or1j19 ENSMUST00000215199 ENSMUSP00000150343 TRANSLATION protein_coding - CCDS15980.1 3 313.0 0.0 1.0 5.2 190.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049315 Or1j19 ENSMUST00000056865 ENSMUSP00000054037 TRANSLATION protein_coding - CCDS15980.1 - 313.0 0.0 1.0 5.2 190.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049315 Or1j19 ENSMUST00000213498 ENSMUSP00000151006 TRANSLATION protein_coding - CCDS15980.1 3 313.0 0.0 1.0 5.2 190.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027646 Src ENSMUST00000129770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027646 Src ENSMUST00000133900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027646 Src ENSMUST00000109531 ENSMUSP00000105157 TRANSLATION protein_coding - CCDS16978.1 5 535.0 16.0 9.75 27.0 466.2 0.0 -4,-6 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000027646 Src ENSMUST00000145715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027646 Src ENSMUST00000109533 ENSMUSP00000105159 TRANSLATION protein_coding - CCDS16978.1 1 535.0 16.0 9.75 27.0 466.2 0.0 -4,-6 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000027646 Src ENSMUST00000109529 ENSMUSP00000105155 TRANSLATION protein_coding - CCDS38305.1 1 541.0 16.0 9.42 24.1 454.9 0.0 -4,-6 0.9244 15 20.214 MINOR ENSMUSG00000027646 Src ENSMUST00000029175 ENSMUSP00000029175 TRANSLATION protein_coding - CCDS16978.1 5 535.0 16.0 9.75 27.0 466.2 0.0 -4,-6 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000027646 Src ENSMUST00000092576 ENSMUSP00000090237 TRANSLATION protein_coding - CCDS38305.1 5 541.0 16.0 9.42 24.1 454.9 0.0 -4,-6 0.9244 15 20.214 MINOR ENSMUSG00000033268 Duox1 ENSMUST00000099461 ENSMUSP00000097060 TRANSLATION protein_coding - CCDS38222.1 2 1551.0 5.0 20.16 6.9 588.7 0.0 3,-2 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000070708 Gtsf1l ENSMUST00000094653 ENSMUSP00000092237 TRANSLATION protein_coding - CCDS17007.1 - 151.0 6.0 0.8 0.1 67.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000027067 Ssrp1 ENSMUST00000130729 ENSMUSP00000121639 TRANSLATION protein_coding stop - 1 623.0 0.0 9.9 0.0 275.1 0.0 -4,-5 0.023 13 -2.0 MINOR ENSMUSG00000027067 Ssrp1 ENSMUST00000146530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027067 Ssrp1 ENSMUST00000127069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027067 Ssrp1 ENSMUST00000145097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027067 Ssrp1 ENSMUST00000135414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027067 Ssrp1 ENSMUST00000123467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027067 Ssrp1 ENSMUST00000142359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027067 Ssrp1 ENSMUST00000077798 ENSMUSP00000076971 TRANSLATION protein_coding - CCDS38165.1 1 708.0 0.0 10.15 9.0 275.1 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000027067 Ssrp1 ENSMUST00000168266 ENSMUSP00000127058 TRANSLATION protein_coding - CCDS38165.1 1 708.0 0.0 10.15 9.0 275.1 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000079277 Hoxd3 ENSMUST00000111983 ENSMUSP00000107614 TRANSLATION protein_coding - CCDS38149.1 1 433.0 0.0 1.0 11.6 182.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079277 Hoxd3 ENSMUST00000140666 ENSMUSP00000134616 TRANSLATION protein_coding stop - 3 113.0 0.0 1.0 0.0 77.0 0.0 -4,-7 0.0284 - -2.0 MINOR ENSMUSG00000079277 Hoxd3 ENSMUST00000190553 - NO_TRANSLATION retained_intron ENSMUSG00000079277 Hoxd3 ENSMUST00000047830 ENSMUSP00000044809 TRANSLATION protein_coding - CCDS38149.1 5 433.0 0.0 1.0 11.6 182.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079277 Hoxd3 ENSMUST00000111982 ENSMUSP00000107613 TRANSLATION protein_coding - CCDS38149.1 1 433.0 0.0 1.0 11.6 182.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079277 Hoxd3 ENSMUST00000144544 ENSMUSP00000134633 TRANSLATION protein_coding stop - 3 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017310 Spint4 ENSMUST00000017454 ENSMUSP00000017454 TRANSLATION protein_coding - CCDS17051.1 1 159.0 0.0 1.5 0.0 55.6 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000049086 Bmyc ENSMUST00000061483 ENSMUSP00000097885 TRANSLATION protein_coding - CCDS15789.1 - 170.0 0.0 0.0 0.1 134.2 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000027412 Lpin3 ENSMUST00000109455 ENSMUSP00000105081 TRANSLATION protein_coding - - 5 817.0 8.0 2.925 0.3 597.8 0.0 -4,-5 0.1211 10 17.334 MINOR ENSMUSG00000027412 Lpin3 ENSMUST00000124920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027412 Lpin3 ENSMUST00000109457 ENSMUSP00000105083 TRANSLATION protein_coding - - 1 858.0 8.0 2.925 0.0 603.6 0.0 -4,-5 0.1542 11 17.682 MINOR ENSMUSG00000027412 Lpin3 ENSMUST00000109456 ENSMUSP00000105082 TRANSLATION protein_coding - CCDS16998.1 1 848.0 8.0 2.925 1.1 608.9 0.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000027412 Lpin3 ENSMUST00000040872 ENSMUSP00000043053 TRANSLATION protein_coding - CCDS16998.1 1 848.0 8.0 2.925 1.1 608.9 0.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000075304 Sp5 ENSMUST00000100043 ENSMUSP00000097620 TRANSLATION protein_coding - CCDS16106.1 1 398.0 12.0 0.2 9.0 72.1 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000074872 Ctxn2 ENSMUST00000238754 ENSMUSP00000158834 TRANSLATION protein_coding - - - 81.0 0.0 0.6 29.5 138.7 1.0 -4,-6 0.8342 - 12.0 ALTERNATIVE:1 ENSMUSG00000074872 Ctxn2 ENSMUST00000099452 ENSMUSP00000097051 TRANSLATION protein_coding - CCDS50692.1 1 82.0 0.0 0.6 29.5 138.7 1.0 -4,-6 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000074872 Ctxn2 ENSMUST00000238377 ENSMUSP00000158847 TRANSLATION protein_coding - - - 81.0 0.0 0.6 29.5 138.7 1.0 -4,-6 0.8342 - 12.0 ALTERNATIVE:1 ENSMUSG00000078862 Gm14326 ENSMUST00000108932 ENSMUSP00000104560 TRANSLATION protein_coding - CCDS71210.1 1 69.0 0.0 1.75 0.0 74.4 0.0 -4,-5 0.0162 - 3.816 MINOR ENSMUSG00000078862 Gm14326 ENSMUST00000178829 ENSMUSP00000137615 TRANSLATION protein_coding - CCDS50833.1 5 554.0 66.0 2.75 0.4 427.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078862 Gm14326 ENSMUST00000108928 ENSMUSP00000104556 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 74.4 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000078862 Gm14326 ENSMUST00000108930 ENSMUSP00000104558 TRANSLATION protein_coding - CCDS50833.1 2 554.0 66.0 2.75 0.4 427.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000051329 Nup160 ENSMUST00000145669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051329 Nup160 ENSMUST00000130629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051329 Nup160 ENSMUST00000126503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051329 Nup160 ENSMUST00000132595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051329 Nup160 ENSMUST00000136739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051329 Nup160 ENSMUST00000154036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051329 Nup160 ENSMUST00000057481 ENSMUSP00000059289 TRANSLATION protein_coding - CCDS16413.1 1 1402.0 0.0 13.935 11.6 431.4 0.0 -4,-6 1.0 25 15.0 PRINCIPAL:1 ENSMUSG00000027253 Lrp4 ENSMUST00000143874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027253 Lrp4 ENSMUST00000151907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027253 Lrp4 ENSMUST00000028689 ENSMUSP00000028689 TRANSLATION protein_coding - CCDS16432.1 1 1905.0 50.0 30.498 6.0 1036.9 0.0 2,-3 1.0 21 20.0 PRINCIPAL:1 ENSMUSG00000027253 Lrp4 ENSMUST00000123897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039844 Rapgef1 ENSMUST00000095087 ENSMUSP00000092703 TRANSLATION protein_coding - CCDS38091.1 1 1224.0 0.0 5.68 0.3 220.6 0.0 -4,-7 0.503 15 8.0 MINOR ENSMUSG00000039844 Rapgef1 ENSMUST00000238899 ENSMUSP00000158995 TRANSLATION protein_coding - - - 1087.0 0.0 5.68 4.9 220.6 0.0 -4,-6 0.8429 14 10.0 ALTERNATIVE:1 ENSMUSG00000039844 Rapgef1 ENSMUST00000147755 ENSMUSP00000121615 TRANSLATION protein_coding - - 1 1185.0 0.0 5.68 0.3 220.6 0.0 -4,-7 0.3313 15 8.0 MINOR ENSMUSG00000039844 Rapgef1 ENSMUST00000137719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039844 Rapgef1 ENSMUST00000123953 - NO_TRANSLATION retained_intron ENSMUSG00000039844 Rapgef1 ENSMUST00000102872 ENSMUSP00000099936 TRANSLATION protein_coding - CCDS15854.1 1 1086.0 0.0 5.68 4.5 220.6 0.0 -4,-7 1.0 14 9.794 PRINCIPAL:4 ENSMUSG00000039844 Rapgef1 ENSMUST00000091146 ENSMUSP00000088680 TRANSLATION protein_coding - CCDS38092.1 1 1218.0 0.0 5.68 0.3 220.6 0.0 -4,-7 0.5508 15 8.0 MINOR ENSMUSG00000039844 Rapgef1 ENSMUST00000147488 ENSMUSP00000117631 TRANSLATION protein_coding start - 1 643.0 0.0 5.68 0.0 220.6 0.0 -4,-5 0.0368 8 -2.0 MINOR ENSMUSG00000060988 Galnt13 ENSMUST00000112634 ENSMUSP00000108253 TRANSLATION protein_coding - - 1 592.0 21.0 10.65 0.0 194.2 1.0 0,-5 0.0414 3 15.546 MINOR ENSMUSG00000060988 Galnt13 ENSMUST00000068595 ENSMUSP00000063464 TRANSLATION protein_coding - CCDS16041.1 1 556.0 21.0 10.33 30.8 235.1 1.0 0,-5 1.0 3 21.358 PRINCIPAL:1 ENSMUSG00000060988 Galnt13 ENSMUST00000112636 ENSMUSP00000108255 TRANSLATION protein_coding - CCDS16041.1 1 556.0 21.0 10.33 30.8 235.1 1.0 0,-5 1.0 3 21.358 PRINCIPAL:1 ENSMUSG00000060988 Galnt13 ENSMUST00000136642 ENSMUSP00000115879 TRANSLATION protein_coding stop - 2 96.0 0.0 1.0 0.0 0.0 1.0 0,-5 0.0 - -2.0 MINOR ENSMUSG00000060988 Galnt13 ENSMUST00000112635 ENSMUSP00000108254 TRANSLATION protein_coding - CCDS16041.1 1 556.0 21.0 10.33 30.8 235.1 1.0 0,-5 1.0 3 21.358 PRINCIPAL:1 ENSMUSG00000043342 Hoxd9 ENSMUST00000059272 ENSMUSP00000058490 TRANSLATION protein_coding - CCDS16142.1 1 339.0 0.0 1.0 5.0 224.5 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000038848 Ythdf1 ENSMUST00000037299 ENSMUSP00000037808 TRANSLATION protein_coding - CCDS17188.1 1 559.0 0.0 1.33 15.6 144.4 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000038848 Ythdf1 ENSMUST00000124666 ENSMUSP00000116665 TRANSLATION protein_coding stop - 3 183.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038848 Ythdf1 ENSMUST00000108876 ENSMUSP00000104504 TRANSLATION protein_coding - - 1 586.0 0.0 1.33 0.0 144.4 0.0 -4,-5 0.0668 6 12.0 MINOR ENSMUSG00000007476 Lrrc8a ENSMUST00000095078 ENSMUSP00000092690 TRANSLATION protein_coding - CCDS15875.1 5 810.0 0.0 1.33 27.9 586.6 4.0 -4,-7 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000007476 Lrrc8a ENSMUST00000113654 ENSMUSP00000109284 TRANSLATION protein_coding - CCDS15875.1 5 810.0 0.0 1.33 27.9 586.6 4.0 -4,-7 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000027496 Aurka ENSMUST00000109140 ENSMUSP00000104768 TRANSLATION protein_coding - CCDS71204.1 1 395.0 17.0 5.0 3.0 237.1 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:2 ENSMUSG00000027496 Aurka ENSMUST00000109139 ENSMUSP00000104767 TRANSLATION protein_coding - CCDS71204.1 1 395.0 17.0 5.0 3.0 237.1 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:2 ENSMUSG00000027496 Aurka ENSMUST00000126107 - NO_TRANSLATION retained_intron ENSMUSG00000027496 Aurka ENSMUST00000128004 - NO_TRANSLATION retained_intron ENSMUSG00000027496 Aurka ENSMUST00000028997 ENSMUSP00000028997 TRANSLATION protein_coding - CCDS17129.1 1 417.0 17.0 5.0 0.0 237.1 0.0 -4,-5 0.1217 3 14.0 ALTERNATIVE:2 ENSMUSG00000027405 Nop56 ENSMUST00000028890 ENSMUSP00000028890 TRANSLATION protein_coding start - 2 296.0 0.0 3.83 0.0 80.7 0.0 0,-3 0.0014 8 -2.0 MINOR ENSMUSG00000027405 Nop56 ENSMUST00000150745 - NO_TRANSLATION retained_intron ENSMUSG00000027405 Nop56 ENSMUST00000149955 ENSMUSP00000123879 TRANSLATION nonsense_mediated_decay start - 3 125.0 0.0 2.66 0.0 112.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027405 Nop56 ENSMUST00000103198 ENSMUSP00000099487 TRANSLATION protein_coding - CCDS16737.1 1 580.0 0.0 11.91 0.1 359.1 0.0 -4,-6 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000027405 Nop56 ENSMUST00000143547 ENSMUSP00000124228 TRANSLATION nonsense_mediated_decay start - 3 18.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027405 Nop56 ENSMUST00000162063 - NO_TRANSLATION retained_intron ENSMUSG00000027405 Nop56 ENSMUST00000150401 ENSMUSP00000123890 TRANSLATION nonsense_mediated_decay start - 5 173.0 0.0 3.83 0.0 80.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027405 Nop56 ENSMUST00000145335 - NO_TRANSLATION retained_intron ENSMUSG00000027405 Nop56 ENSMUST00000136621 ENSMUSP00000124616 TRANSLATION protein_coding - - 5 261.0 0.0 6.08 0.0 130.4 0.0 -4,-6 0.0 8 0.0 MINOR ENSMUSG00000027405 Nop56 ENSMUST00000160183 - NO_TRANSLATION retained_intron ENSMUSG00000027405 Nop56 ENSMUST00000146454 ENSMUSP00000125304 TRANSLATION protein_coding start - 5 222.0 0.0 5.83 0.0 210.6 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000027405 Nop56 ENSMUST00000153353 - NO_TRANSLATION retained_intron ENSMUSG00000027405 Nop56 ENSMUST00000161025 - NO_TRANSLATION retained_intron ENSMUSG00000027405 Nop56 ENSMUST00000159373 ENSMUSP00000124080 TRANSLATION protein_coding start/stop - 3 135.0 0.0 3.38 0.0 81.6 0.0 0,-4 0.0014 5 -2.0 MINOR ENSMUSG00000027405 Nop56 ENSMUST00000161543 - NO_TRANSLATION retained_intron ENSMUSG00000027405 Nop56 ENSMUST00000133351 - NO_TRANSLATION retained_intron ENSMUSG00000027405 Nop56 ENSMUST00000141872 ENSMUSP00000125305 TRANSLATION protein_coding start/stop - 3 173.0 0.0 4.0 0.0 66.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000027405 Nop56 ENSMUST00000160976 - NO_TRANSLATION retained_intron ENSMUSG00000027405 Nop56 ENSMUST00000138163 - NO_TRANSLATION retained_intron ENSMUSG00000078875 Gm14419 ENSMUST00000126358 ENSMUSP00000118666 TRANSLATION protein_coding - - 5 582.0 71.0 2.75 0.1 461.4 0.0 -4,-5 0.8168 - 18.0 PRINCIPAL:1 ENSMUSG00000078875 Gm14419 ENSMUST00000108975 ENSMUSP00000104603 TRANSLATION protein_coding - - 1 71.0 0.0 1.75 0.1 76.4 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000078875 Gm14419 ENSMUST00000156844 ENSMUSP00000117002 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000062757 Or4c11 ENSMUST00000077302 ENSMUSP00000076532 TRANSLATION protein_coding - CCDS16353.1 - 307.0 0.0 1.0 12.5 161.1 6.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062757 Or4c11 ENSMUST00000216950 ENSMUSP00000149929 TRANSLATION protein_coding - CCDS16353.1 5 307.0 0.0 1.0 12.5 161.1 6.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026835 Fcnb ENSMUST00000117486 ENSMUSP00000112625 TRANSLATION protein_coding - - 1 253.0 2.0 3.414 0.0 198.7 0.0 3,-2 0.0017 1 6.78 MINOR ENSMUSG00000026835 Fcnb ENSMUST00000135472 ENSMUSP00000119098 TRANSLATION protein_coding stop - 3 112.0 0.0 0.264 0.0 31.9 0.0 3,-2 0.0002 - -2.0 MINOR ENSMUSG00000026835 Fcnb ENSMUST00000028179 ENSMUSP00000028179 TRANSLATION protein_coding - CCDS15832.1 1 314.0 6.0 4.264 0.4 290.7 0.0 3,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000018770 Atp5mc3 ENSMUST00000111996 ENSMUSP00000107627 TRANSLATION protein_coding - CCDS16136.1 2 141.0 0.0 2.0 34.9 44.1 1.0 -4,0 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000018770 Atp5mc3 ENSMUST00000155474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018770 Atp5mc3 ENSMUST00000131045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018770 Atp5mc3 ENSMUST00000142768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018770 Atp5mc3 ENSMUST00000018914 ENSMUSP00000018914 TRANSLATION protein_coding - CCDS16136.1 1 141.0 0.0 2.0 34.9 44.1 1.0 -4,0 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000075142 Or5d47 ENSMUST00000099840 ENSMUSP00000097428 TRANSLATION protein_coding - CCDS16318.1 - 318.0 0.0 1.0 0.4 157.0 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027651 Rprd1b ENSMUST00000152452 ENSMUSP00000118434 TRANSLATION protein_coding - - 1 224.0 0.0 4.33 0.0 133.3 0.0 -4,-5 0.0 5 2.998 MINOR ENSMUSG00000027651 Rprd1b ENSMUST00000156552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027651 Rprd1b ENSMUST00000103123 ENSMUSP00000099412 TRANSLATION protein_coding - CCDS16984.1 1 325.0 0.0 6.33 33.9 289.3 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000027651 Rprd1b ENSMUST00000128206 ENSMUSP00000117807 TRANSLATION protein_coding start - 3 194.0 0.0 3.0 0.0 129.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027651 Rprd1b ENSMUST00000135603 ENSMUSP00000122419 TRANSLATION protein_coding start/stop - 3 143.0 0.0 2.0 0.0 127.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027651 Rprd1b ENSMUST00000029180 ENSMUSP00000029180 TRANSLATION protein_coding - CCDS71177.1 1 326.0 0.0 6.33 33.9 289.3 0.0 -4,-5 0.9915 6 12.0 ALTERNATIVE:1 ENSMUSG00000027651 Rprd1b ENSMUST00000109519 - NO_TRANSLATION retained_intron ENSMUSG00000027651 Rprd1b ENSMUST00000109518 ENSMUSP00000105144 TRANSLATION protein_coding - CCDS71176.1 1 294.0 0.0 5.33 0.3 207.8 0.0 -4,-5 0.0101 6 5.002 MINOR ENSMUSG00000027597 Ahcy ENSMUST00000137242 ENSMUSP00000116774 TRANSLATION protein_coding stop - 3 95.0 5.0 2.16 0.0 131.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027597 Ahcy ENSMUST00000146367 - NO_TRANSLATION retained_intron ENSMUSG00000027597 Ahcy ENSMUST00000054607 ENSMUSP00000061851 TRANSLATION protein_coding - CCDS16942.1 1 432.0 43.0 9.41 33.7 528.6 0.0 -4,-6 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000034903 Cobll1 ENSMUST00000112431 ENSMUSP00000108050 TRANSLATION protein_coding - - 1 1241.0 0.0 1.33 0.0 153.7 0.0 -4,-6 0.6716 42 8.0 ALTERNATIVE:2 ENSMUSG00000034903 Cobll1 ENSMUST00000155082 ENSMUSP00000116196 TRANSLATION protein_coding stop - 3 175.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000034903 Cobll1 ENSMUST00000102726 ENSMUSP00000099787 TRANSLATION protein_coding - CCDS16072.1 1 1240.0 0.0 1.33 0.0 153.7 0.0 -4,-6 1.0 42 8.0 PRINCIPAL:2 ENSMUSG00000034903 Cobll1 ENSMUST00000155768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034903 Cobll1 ENSMUST00000112429 ENSMUSP00000108048 TRANSLATION protein_coding - - 5 1241.0 0.0 1.33 0.0 153.7 0.0 -4,-6 0.6716 42 8.0 ALTERNATIVE:2 ENSMUSG00000034903 Cobll1 ENSMUST00000090896 ENSMUSP00000088412 TRANSLATION protein_coding - CCDS50595.1 1 1203.0 0.0 1.33 0.0 153.7 0.0 -4,-6 0.605 42 8.0 ALTERNATIVE:2 ENSMUSG00000034903 Cobll1 ENSMUST00000132979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034903 Cobll1 ENSMUST00000112430 ENSMUSP00000108049 TRANSLATION protein_coding - - 1 1202.0 0.0 1.33 0.0 153.7 0.0 -4,-6 0.3174 42 8.0 ALTERNATIVE:2 ENSMUSG00000034903 Cobll1 ENSMUST00000155916 ENSMUSP00000115065 TRANSLATION protein_coding stop - 5 346.0 0.0 1.33 0.0 150.5 0.0 -4,0 0.0682 12 -2.0 MINOR ENSMUSG00000034903 Cobll1 ENSMUST00000136537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034903 Cobll1 ENSMUST00000132478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034903 Cobll1 ENSMUST00000156643 ENSMUSP00000114447 TRANSLATION protein_coding stop - 5 142.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034903 Cobll1 ENSMUST00000124769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027381 Bcl2l11 ENSMUST00000146023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027381 Bcl2l11 ENSMUST00000110341 ENSMUSP00000105970 TRANSLATION protein_coding - CCDS16713.1 1 196.0 0.0 1.4 14.4 150.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027381 Bcl2l11 ENSMUST00000103210 ENSMUSP00000099499 TRANSLATION protein_coding - CCDS16714.1 1 140.0 0.0 1.4 8.8 150.4 0.0 -4,-5 0.8029 - 14.328 MINOR ENSMUSG00000027381 Bcl2l11 ENSMUST00000129206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027381 Bcl2l11 ENSMUST00000089634 ENSMUSP00000087062 TRANSLATION protein_coding - CCDS71141.1 1 91.0 0.0 0.0 0.0 78.0 0.0 -4,-5 0.0232 - 1.656 MINOR ENSMUSG00000027381 Bcl2l11 ENSMUST00000132201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027381 Bcl2l11 ENSMUST00000103211 ENSMUSP00000099500 TRANSLATION protein_coding - CCDS16712.1 2 110.0 0.0 1.4 5.0 150.4 0.0 -4,-5 0.4007 - 13.196 MINOR ENSMUSG00000109033 Or4f14c ENSMUST00000217078 ENSMUSP00000149894 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 11.5 138.4 6.0 -3,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109033 Or4f14c ENSMUST00000207542 ENSMUSP00000146586 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 11.5 138.4 6.0 -3,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075081 Or4a74 ENSMUST00000099771 ENSMUSP00000097359 TRANSLATION protein_coding - CCDS16386.1 - 314.0 0.0 1.0 5.1 162.5 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075081 Or4a74 ENSMUST00000216424 ENSMUSP00000149408 TRANSLATION protein_coding - CCDS16386.1 5 314.0 0.0 1.0 5.1 162.5 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075081 Or4a74 ENSMUST00000111532 ENSMUSP00000107157 TRANSLATION protein_coding - CCDS16386.1 5 314.0 0.0 1.0 5.1 162.5 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000068452 Duox2 ENSMUST00000237546 ENSMUSP00000158204 TRANSLATION protein_coding - - - 1545.0 20.0 25.405 7.5 572.4 4.0 2,-1 1.0 11 13.918 PRINCIPAL:4 ENSMUSG00000068452 Duox2 ENSMUST00000155820 - NO_TRANSLATION retained_intron ENSMUSG00000068452 Duox2 ENSMUST00000053734 ENSMUSP00000050314 TRANSLATION protein_coding - - 2 1517.0 22.0 25.78 0.1 572.4 4.0 2,-1 0.7578 11 14.0 ALTERNATIVE:2 ENSMUSG00000078202 Nrarp ENSMUST00000104999 ENSMUSP00000100615 TRANSLATION protein_coding - CCDS38066.1 - 114.0 0.0 1.0 29.0 61.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027341 Tmem230 ENSMUST00000028816 ENSMUSP00000028816 TRANSLATION protein_coding - CCDS16770.1 1 120.0 0.0 2.0 34.9 69.6 2.0 -4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027341 Tmem230 ENSMUST00000141813 - NO_TRANSLATION retained_intron ENSMUSG00000027341 Tmem230 ENSMUST00000180286 ENSMUSP00000136826 TRANSLATION protein_coding - CCDS16770.1 2 120.0 0.0 2.0 34.9 69.6 2.0 -4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027341 Tmem230 ENSMUST00000110164 ENSMUSP00000105793 TRANSLATION protein_coding - CCDS16770.1 2 120.0 0.0 2.0 34.9 69.6 2.0 -4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027341 Tmem230 ENSMUST00000143782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027341 Tmem230 ENSMUST00000110163 ENSMUSP00000105792 TRANSLATION protein_coding - CCDS16770.1 3 120.0 0.0 2.0 34.9 69.6 2.0 -4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027165 Iftap ENSMUST00000090513 ENSMUSP00000087999 TRANSLATION protein_coding - CCDS16461.1 1 244.0 0.0 0.0 4.5 0.0 0.0 -4,-5 1.0 5 2.0 PRINCIPAL:1 ENSMUSG00000027165 Iftap ENSMUST00000136601 ENSMUSP00000134813 TRANSLATION protein_coding start - 5 114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0121 2 -2.0 MINOR ENSMUSG00000027165 Iftap ENSMUST00000111231 ENSMUSP00000106862 TRANSLATION protein_coding - CCDS16461.1 1 244.0 0.0 0.0 4.5 0.0 0.0 -4,-5 1.0 5 2.0 PRINCIPAL:1 ENSMUSG00000027165 Iftap ENSMUST00000138903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027165 Iftap ENSMUST00000160722 ENSMUSP00000124783 TRANSLATION protein_coding - CCDS16461.1 1 244.0 0.0 0.0 4.5 0.0 0.0 -4,-5 1.0 5 2.0 PRINCIPAL:1 ENSMUSG00000027165 Iftap ENSMUST00000160037 ENSMUSP00000123987 TRANSLATION protein_coding - CCDS16461.1 1 244.0 0.0 0.0 4.5 0.0 0.0 -4,-5 1.0 5 2.0 PRINCIPAL:1 ENSMUSG00000027165 Iftap ENSMUST00000099682 ENSMUSP00000097274 TRANSLATION protein_coding - - 5 216.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.027 3 0.0 MINOR ENSMUSG00000027165 Iftap ENSMUST00000132640 - NO_TRANSLATION retained_intron ENSMUSG00000027165 Iftap ENSMUST00000177152 ENSMUSP00000135478 TRANSLATION protein_coding start - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0125 2 -2.0 MINOR ENSMUSG00000027165 Iftap ENSMUST00000177007 - NO_TRANSLATION retained_intron ENSMUSG00000027165 Iftap ENSMUST00000128898 ENSMUSP00000114251 TRANSLATION protein_coding stop - 5 182.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0165 3 -2.0 MINOR ENSMUSG00000027165 Iftap ENSMUST00000177171 - NO_TRANSLATION retained_intron ENSMUSG00000026662 Sephs1 ENSMUST00000027973 ENSMUSP00000027973 TRANSLATION protein_coding - CCDS15659.1 1 392.0 14.0 6.08 36.2 107.2 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000026662 Sephs1 ENSMUST00000144565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026662 Sephs1 ENSMUST00000140045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026662 Sephs1 ENSMUST00000115019 ENSMUSP00000110671 TRANSLATION protein_coding - CCDS15659.1 1 392.0 14.0 6.08 36.2 107.2 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000056824 Zfp663 ENSMUST00000136482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056824 Zfp663 ENSMUST00000141140 ENSMUSP00000115254 TRANSLATION protein_coding stop - 5 84.0 0.0 1.45 0.0 76.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056824 Zfp663 ENSMUST00000103085 ENSMUSP00000099374 TRANSLATION protein_coding - CCDS17078.1 1 656.0 24.0 1.95 0.0 224.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000056824 Zfp663 ENSMUST00000073062 ENSMUSP00000072813 TRANSLATION protein_coding - CCDS17078.1 5 656.0 24.0 1.95 0.0 224.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000026792 Lrsam1 ENSMUST00000138015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026792 Lrsam1 ENSMUST00000113200 ENSMUSP00000108825 TRANSLATION protein_coding - CCDS15935.1 5 727.0 0.0 5.53 14.7 103.6 0.0 -4,-7 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000026792 Lrsam1 ENSMUST00000195713 ENSMUSP00000141675 TRANSLATION nonsense_mediated_decay start - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000026792 Lrsam1 ENSMUST00000145578 ENSMUSP00000122711 TRANSLATION protein_coding stop - 3 55.0 0.0 0.45 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026792 Lrsam1 ENSMUST00000191838 ENSMUSP00000141713 TRANSLATION nonsense_mediated_decay - - 2 84.0 0.0 0.45 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026792 Lrsam1 ENSMUST00000028132 ENSMUSP00000028132 TRANSLATION protein_coding - CCDS15935.1 1 727.0 0.0 5.53 14.7 103.6 0.0 -4,-7 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000026792 Lrsam1 ENSMUST00000133832 ENSMUSP00000117194 TRANSLATION protein_coding stop - 3 128.0 0.0 2.4 0.0 10.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026792 Lrsam1 ENSMUST00000195776 - NO_TRANSLATION retained_intron ENSMUSG00000026792 Lrsam1 ENSMUST00000127321 ENSMUSP00000115830 TRANSLATION protein_coding stop - 3 129.0 0.0 2.4 0.0 27.2 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026792 Lrsam1 ENSMUST00000147528 ENSMUSP00000122877 TRANSLATION protein_coding stop - 3 124.0 0.0 2.4 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026792 Lrsam1 ENSMUST00000145699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026792 Lrsam1 ENSMUST00000124492 ENSMUSP00000118604 TRANSLATION protein_coding stop - 5 58.0 0.0 0.95 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000027612 Mmp24 ENSMUST00000029141 ENSMUSP00000029141 TRANSLATION protein_coding - CCDS16955.1 1 618.0 24.0 6.0 0.4 542.6 0.0 -2,1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000027612 Mmp24 ENSMUST00000135945 - NO_TRANSLATION retained_intron ENSMUSG00000027546 Atp9a ENSMUST00000156397 ENSMUSP00000119732 TRANSLATION protein_coding stop - 3 189.0 0.0 2.848 0.0 72.5 3.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027546 Atp9a ENSMUST00000123156 ENSMUSP00000114868 TRANSLATION protein_coding stop - 3 112.0 0.0 2.25 0.0 72.5 3.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000027546 Atp9a ENSMUST00000140188 - NO_TRANSLATION retained_intron ENSMUSG00000027546 Atp9a ENSMUST00000029060 ENSMUSP00000029060 TRANSLATION protein_coding - CCDS38345.1 1 1047.0 3.0 22.446 25.5 326.8 9.0 -4,-6 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000027546 Atp9a ENSMUST00000156555 ENSMUSP00000119315 TRANSLATION protein_coding stop - 3 88.0 0.0 1.65 0.0 72.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000027546 Atp9a ENSMUST00000109175 ENSMUSP00000104804 TRANSLATION protein_coding - CCDS71202.1 1 1031.0 3.0 22.446 1.1 326.8 9.0 -4,-7 0.4824 12 15.016 MINOR ENSMUSG00000027546 Atp9a ENSMUST00000151610 ENSMUSP00000121364 TRANSLATION protein_coding stop - 3 62.0 0.0 1.698 0.0 0.0 3.0 0,-4 0.0017 1 -2.0 MINOR ENSMUSG00000027546 Atp9a ENSMUST00000109177 ENSMUSP00000104806 TRANSLATION protein_coding - CCDS71203.1 1 1029.0 3.0 22.446 0.1 326.8 9.0 -4,-7 0.4542 12 15.0 MINOR ENSMUSG00000027546 Atp9a ENSMUST00000178504 ENSMUSP00000136793 TRANSLATION protein_coding - - 5 1047.0 3.0 22.446 25.5 326.8 9.0 -4,-6 0.8692 12 19.0 PRINCIPAL:1 ENSMUSG00000027546 Atp9a ENSMUST00000109176 ENSMUSP00000104805 TRANSLATION protein_coding - - 1 1105.0 3.0 22.446 0.0 326.8 9.0 -4,0 0.2145 12 15.0 MINOR ENSMUSG00000027546 Atp9a ENSMUST00000147757 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027670 Ocstamp ENSMUST00000029213 ENSMUSP00000029213 TRANSLATION protein_coding - CCDS17080.1 1 498.0 0.0 0.0 0.0 109.9 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000037259 Dzank1 ENSMUST00000150816 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037259 Dzank1 ENSMUST00000124823 - NO_TRANSLATION retained_intron ENSMUSG00000037259 Dzank1 ENSMUST00000081982 ENSMUSP00000080643 TRANSLATION protein_coding - CCDS38254.1 1 778.0 19.0 2.47 0.7 59.8 0.0 -4,-6 1.0 19 12.0 PRINCIPAL:2 ENSMUSG00000037259 Dzank1 ENSMUST00000163701 ENSMUSP00000133177 TRANSLATION protein_coding - - 5 779.0 19.0 2.47 0.7 59.8 0.0 -4,-6 0.6618 19 12.0 ALTERNATIVE:2 ENSMUSG00000027306 Nusap1 ENSMUST00000153036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027306 Nusap1 ENSMUST00000068225 ENSMUSP00000068713 TRANSLATION protein_coding - CCDS16605.1 1 427.0 0.0 0.0 0.0 319.6 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000027306 Nusap1 ENSMUST00000125491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027306 Nusap1 ENSMUST00000028771 ENSMUSP00000028771 TRANSLATION protein_coding - CCDS38206.1 1 394.0 0.0 0.0 0.0 283.7 0.0 -4,-5 0.0605 4 3.846 MINOR ENSMUSG00000095809 Or4k42 ENSMUST00000217611 ENSMUSP00000150388 TRANSLATION protein_coding - CCDS50659.1 3 312.0 0.0 2.75 10.5 176.0 8.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095809 Or4k42 ENSMUST00000099616 ENSMUSP00000097211 TRANSLATION protein_coding - CCDS50659.1 - 312.0 0.0 2.75 10.5 176.0 8.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095809 Or4k42 ENSMUST00000208695 ENSMUSP00000146457 TRANSLATION protein_coding stop - 3 83.0 0.0 1.0 0.0 43.4 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000095809 Or4k42 ENSMUST00000208881 ENSMUSP00000146756 TRANSLATION protein_coding stop - 3 108.0 0.0 1.75 0.0 67.0 3.0 -4,-6 0.0015 - -2.0 MINOR ENSMUSG00000008200 Fnbp4 ENSMUST00000238890 ENSMUSP00000159108 TRANSLATION protein_coding - - - 1030.0 0.0 0.0 0.1 76.9 0.0 -4,-2 0.2608 14 2.0 ALTERNATIVE:2 ENSMUSG00000008200 Fnbp4 ENSMUST00000126829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008200 Fnbp4 ENSMUST00000152794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008200 Fnbp4 ENSMUST00000145747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008200 Fnbp4 ENSMUST00000123955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008200 Fnbp4 ENSMUST00000123314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008200 Fnbp4 ENSMUST00000013759 ENSMUSP00000013759 TRANSLATION protein_coding - CCDS16414.1 1 1077.0 0.0 0.0 0.0 76.9 0.0 -4,-7 1.0 14 2.0 PRINCIPAL:2 ENSMUSG00000008200 Fnbp4 ENSMUST00000141672 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008200 Fnbp4 ENSMUST00000142631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008200 Fnbp4 ENSMUST00000135592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027163 Commd9 ENSMUST00000133576 - NO_TRANSLATION retained_intron ENSMUSG00000027163 Commd9 ENSMUST00000131287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027163 Commd9 ENSMUST00000156799 - NO_TRANSLATION retained_intron ENSMUSG00000027163 Commd9 ENSMUST00000028584 ENSMUSP00000028584 TRANSLATION protein_coding - CCDS16465.1 1 198.0 0.0 4.2 29.9 86.1 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000075066 Or4b1d ENSMUST00000213293 ENSMUSP00000149443 TRANSLATION protein_coding stop - 2 241.0 0.0 2.0 0.0 137.8 10.0 -4,-5 0.0049 - -2.0 MINOR ENSMUSG00000075066 Or4b1d ENSMUST00000214973 ENSMUSP00000150370 TRANSLATION protein_coding stop - 3 205.0 0.0 1.0 0.0 113.9 8.0 -4,-5 0.0074 - -2.0 MINOR ENSMUSG00000075066 Or4b1d ENSMUST00000215153 ENSMUSP00000150246 TRANSLATION protein_coding - CCDS16407.1 2 308.0 0.0 3.0 0.4 177.0 12.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075066 Or4b1d ENSMUST00000099755 ENSMUSP00000097344 TRANSLATION protein_coding - CCDS16407.1 - 308.0 0.0 3.0 0.4 177.0 12.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075066 Or4b1d ENSMUST00000215765 ENSMUSP00000149175 TRANSLATION protein_coding - CCDS16407.1 3 308.0 0.0 3.0 0.4 177.0 12.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075066 Or4b1d ENSMUST00000215659 ENSMUSP00000150239 TRANSLATION protein_coding - CCDS16407.1 3 308.0 0.0 3.0 0.4 177.0 12.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041762 Gpr155 ENSMUST00000112043 ENSMUSP00000107674 TRANSLATION protein_coding - CCDS50606.1 5 868.0 0.0 0.5 4.2 49.3 23.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000041762 Gpr155 ENSMUST00000112044 ENSMUSP00000107675 TRANSLATION protein_coding - CCDS71075.1 5 840.0 0.0 0.5 1.3 49.3 22.0 -4,-5 0.565 3 12.188 MINOR ENSMUSG00000041762 Gpr155 ENSMUST00000129184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041762 Gpr155 ENSMUST00000048504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041762 Gpr155 ENSMUST00000076463 ENSMUSP00000075788 TRANSLATION protein_coding - CCDS50606.1 1 868.0 0.0 0.5 4.2 49.3 23.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000041762 Gpr155 ENSMUST00000134595 - NO_TRANSLATION retained_intron ENSMUSG00000041762 Gpr155 ENSMUST00000131430 ENSMUSP00000114294 TRANSLATION protein_coding start - 3 218.0 0.0 0.0 0.0 0.0 5.0 -4,-5 0.0031 1 -2.0 MINOR ENSMUSG00000041762 Gpr155 ENSMUST00000184503 - NO_TRANSLATION retained_intron ENSMUSG00000075160 Or5aq7 ENSMUST00000099862 ENSMUSP00000097448 TRANSLATION protein_coding - CCDS16281.1 - 312.0 0.0 1.0 13.0 179.2 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075160 Or5aq7 ENSMUST00000215828 ENSMUSP00000149161 TRANSLATION protein_coding - CCDS16281.1 5 312.0 0.0 1.0 13.0 179.2 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075160 Or5aq7 ENSMUST00000216088 ENSMUSP00000151207 TRANSLATION protein_coding - CCDS16281.1 3 312.0 0.0 1.0 13.0 179.2 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075160 Or5aq7 ENSMUST00000213978 ENSMUSP00000149374 TRANSLATION protein_coding - CCDS16281.1 5 312.0 0.0 1.0 13.0 179.2 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000049758 Or4f62 ENSMUST00000058176 ENSMUSP00000051938 TRANSLATION protein_coding - CCDS16547.1 - 320.0 0.0 1.0 3.9 133.9 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000049758 Or4f62 ENSMUST00000214063 ENSMUSP00000148937 TRANSLATION protein_coding - CCDS16547.1 5 320.0 0.0 1.0 3.9 133.9 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000049758 Or4f62 ENSMUST00000216873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049758 Or4f62 ENSMUST00000215341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049758 Or4f62 ENSMUST00000217533 ENSMUSP00000151164 TRANSLATION protein_coding - CCDS16547.1 5 320.0 0.0 1.0 3.9 133.9 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000042548 Asxl1 ENSMUST00000227428 ENSMUSP00000154224 TRANSLATION protein_coding - - - 1513.0 6.0 2.1 0.0 198.3 0.0 -4,-6 0.705 4 14.0 ALTERNATIVE:2 ENSMUSG00000042548 Asxl1 ENSMUST00000123215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042548 Asxl1 ENSMUST00000138571 - NO_TRANSLATION retained_intron ENSMUSG00000042548 Asxl1 ENSMUST00000109790 ENSMUSP00000105413 TRANSLATION protein_coding - CCDS38285.1 5 1514.0 6.0 2.1 0.0 198.3 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000042548 Asxl1 ENSMUST00000144722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026999 Nup35 ENSMUST00000127926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026999 Nup35 ENSMUST00000124377 ENSMUSP00000122132 TRANSLATION protein_coding stop - 3 197.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026999 Nup35 ENSMUST00000144697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026999 Nup35 ENSMUST00000028382 ENSMUSP00000028382 TRANSLATION protein_coding - CCDS16179.1 1 325.0 0.0 2.6 20.7 92.8 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000026999 Nup35 ENSMUST00000135305 - NO_TRANSLATION retained_intron ENSMUSG00000027186 Elf5 ENSMUST00000126290 ENSMUSP00000118565 TRANSLATION protein_coding stop - 3 198.0 0.0 1.773 0.0 126.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027186 Elf5 ENSMUST00000137973 - NO_TRANSLATION retained_intron ENSMUSG00000027186 Elf5 ENSMUST00000123793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027186 Elf5 ENSMUST00000152055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027186 Elf5 ENSMUST00000164172 ENSMUSP00000126941 TRANSLATION protein_coding - CCDS16477.1 1 253.0 0.0 3.523 18.7 201.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027186 Elf5 ENSMUST00000028609 ENSMUSP00000028609 TRANSLATION protein_coding - CCDS16477.1 1 253.0 0.0 3.523 18.7 201.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027186 Elf5 ENSMUST00000239273 ENSMUSP00000159212 TRANSLATION protein_coding - - - 272.0 0.0 3.523 2.0 201.5 0.0 -4,-5 0.2169 - 12.224 MINOR ENSMUSG00000016024 Lbp ENSMUST00000129811 ENSMUSP00000118297 TRANSLATION protein_coding start/stop - 5 145.0 0.0 3.83 0.0 121.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000016024 Lbp ENSMUST00000146600 - NO_TRANSLATION retained_intron ENSMUSG00000016024 Lbp ENSMUST00000016168 ENSMUSP00000016168 TRANSLATION protein_coding - CCDS16988.1 1 481.0 0.0 12.71 1.4 488.9 0.0 3,-2 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000016024 Lbp ENSMUST00000152541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016024 Lbp ENSMUST00000109491 ENSMUSP00000105117 TRANSLATION protein_coding - - 2 123.0 0.0 2.8 0.0 82.2 0.0 3,-2 0.0 4 0.0 MINOR ENSMUSG00000027297 Ltk ENSMUST00000127470 - NO_TRANSLATION retained_intron ENSMUSG00000027297 Ltk ENSMUST00000182203 ENSMUSP00000138201 TRANSLATION protein_coding start CCDS50674.1 1 576.0 19.0 7.95 0.1 295.1 3.0 -4,-7 0.2428 - -2.0 MINOR ENSMUSG00000027297 Ltk ENSMUST00000134295 - NO_TRANSLATION retained_intron ENSMUSG00000027297 Ltk ENSMUST00000028759 ENSMUSP00000028759 TRANSLATION protein_coding - CCDS16608.1 1 888.0 19.0 7.95 1.2 295.1 3.0 0,-3 1.0 - 15.0 PRINCIPAL:2 ENSMUSG00000027297 Ltk ENSMUST00000140224 ENSMUSP00000123020 TRANSLATION protein_coding - - 1 476.0 19.0 7.95 0.0 295.1 3.0 -2,-5 0.1317 - 14.0 ALTERNATIVE:2 ENSMUSG00000027297 Ltk ENSMUST00000082130 ENSMUSP00000080774 TRANSLATION protein_coding - CCDS16609.1 1 827.0 19.0 7.95 0.0 295.1 3.0 0,-3 0.4471 - 14.0 ALTERNATIVE:2 ENSMUSG00000026969 Fam166a ENSMUST00000028346 ENSMUSP00000028346 TRANSLATION protein_coding - CCDS15752.1 1 319.0 0.0 0.0 8.8 48.7 0.0 -4,-5 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000026969 Fam166a ENSMUST00000139988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026645 Olah ENSMUST00000027955 ENSMUSP00000027955 TRANSLATION protein_coding - CCDS15647.1 1 265.0 3.0 5.75 4.8 172.0 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000026645 Olah ENSMUST00000194918 ENSMUSP00000141485 TRANSLATION protein_coding - CCDS15647.1 1 265.0 3.0 5.75 4.8 172.0 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000026645 Olah ENSMUST00000115087 ENSMUSP00000110739 TRANSLATION protein_coding - CCDS15647.1 1 265.0 3.0 5.75 4.8 172.0 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000027386 Fbln7 ENSMUST00000110324 ENSMUSP00000105953 TRANSLATION protein_coding - CCDS38235.1 5 440.0 19.0 3.87 11.5 160.4 0.0 4,-1 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000027386 Fbln7 ENSMUST00000028864 ENSMUSP00000028864 TRANSLATION protein_coding - CCDS38235.1 1 440.0 19.0 3.87 11.5 160.4 0.0 4,-1 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000038914 Dido1 ENSMUST00000130986 ENSMUSP00000119689 TRANSLATION protein_coding - CCDS17184.1 1 614.0 8.0 0.6 0.0 43.9 1.0 -4,-5 0.0252 7 6.666 MINOR ENSMUSG00000038914 Dido1 ENSMUST00000103056 ENSMUSP00000099345 TRANSLATION protein_coding - CCDS17183.1 1 1183.0 8.0 5.4 0.0 238.3 0.0 -4,-5 0.2967 21 13.334 ALTERNATIVE:2 ENSMUSG00000038914 Dido1 ENSMUST00000087517 ENSMUSP00000084794 TRANSLATION protein_coding - CCDS17182.1 1 2256.0 8.0 5.4 0.3 243.2 0.0 -4,-5 1.0 35 14.0 PRINCIPAL:2 ENSMUSG00000038914 Dido1 ENSMUST00000103057 ENSMUSP00000099346 TRANSLATION protein_coding - CCDS17183.1 1 1183.0 8.0 5.4 0.0 238.3 0.0 -4,-5 0.2967 21 13.334 ALTERNATIVE:2 ENSMUSG00000038914 Dido1 ENSMUST00000103054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038914 Dido1 ENSMUST00000103055 ENSMUSP00000099344 TRANSLATION protein_coding - CCDS17184.1 1 614.0 8.0 0.6 0.0 43.9 1.0 -4,-5 0.0252 7 6.666 MINOR ENSMUSG00000038914 Dido1 ENSMUST00000037764 ENSMUSP00000048315 TRANSLATION protein_coding - - 1 643.0 0.0 4.8 0.0 194.4 0.0 -4,-2 0.0 13 5.466 MINOR ENSMUSG00000027654 Fam83d ENSMUST00000029183 ENSMUSP00000029183 TRANSLATION protein_coding - CCDS50788.1 1 585.0 0.0 1.6 9.3 326.3 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000027654 Fam83d ENSMUST00000151801 - NO_TRANSLATION retained_intron ENSMUSG00000075072 Or4c58 ENSMUST00000099762 ENSMUSP00000097350 TRANSLATION protein_coding - CCDS16395.1 - 301.0 0.0 1.0 3.8 161.3 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075072 Or4c58 ENSMUST00000214428 ENSMUSP00000150505 TRANSLATION protein_coding - CCDS16395.1 5 301.0 0.0 1.0 3.8 161.3 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075072 Or4c58 ENSMUST00000216674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027104 Atf2 ENSMUST00000112016 ENSMUSP00000107647 TRANSLATION protein_coding - CCDS71076.1 1 389.0 4.0 3.66 0.4 48.1 0.0 -4,-5 0.1899 5 16.0 MINOR ENSMUSG00000027104 Atf2 ENSMUST00000173010 ENSMUSP00000133632 TRANSLATION nonsense_mediated_decay - - 5 377.0 4.0 2.66 0.0 33.1 0.0 -4,-5 0.0265 3 -2.0 MINOR ENSMUSG00000027104 Atf2 ENSMUST00000112010 ENSMUSP00000107641 TRANSLATION protein_coding - CCDS16135.1 1 447.0 0.0 2.0 12.0 48.1 0.0 -4,-5 0.8889 4 11.99 MINOR ENSMUSG00000027104 Atf2 ENSMUST00000154965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027104 Atf2 ENSMUST00000129555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027104 Atf2 ENSMUST00000143714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027104 Atf2 ENSMUST00000090802 ENSMUSP00000088311 TRANSLATION protein_coding - CCDS16135.1 5 447.0 0.0 2.0 12.0 48.1 0.0 -4,-5 0.8889 4 11.99 MINOR ENSMUSG00000027104 Atf2 ENSMUST00000055833 ENSMUSP00000058521 TRANSLATION protein_coding - CCDS16134.1 5 487.0 4.0 3.66 14.3 48.1 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000027104 Atf2 ENSMUST00000128531 ENSMUSP00000118560 TRANSLATION protein_coding stop - 3 228.0 4.0 1.66 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027104 Atf2 ENSMUST00000154456 ENSMUSP00000118719 TRANSLATION protein_coding stop - 5 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027104 Atf2 ENSMUST00000141050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027104 Atf2 ENSMUST00000100009 ENSMUSP00000097588 TRANSLATION protein_coding - CCDS16134.1 1 487.0 4.0 3.66 14.3 48.1 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000027104 Atf2 ENSMUST00000136958 ENSMUSP00000118357 TRANSLATION protein_coding stop - 3 207.0 4.0 1.66 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027104 Atf2 ENSMUST00000156455 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027104 Atf2 ENSMUST00000138098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027104 Atf2 ENSMUST00000124737 ENSMUSP00000114828 TRANSLATION protein_coding start - 3 212.0 0.0 1.0 0.0 35.5 0.0 -4,-7 0.0003 1 -2.0 MINOR ENSMUSG00000027104 Atf2 ENSMUST00000125159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027104 Atf2 ENSMUST00000112007 ENSMUSP00000107638 TRANSLATION protein_coding - CCDS16135.1 1 447.0 0.0 2.0 12.0 48.1 0.0 -4,-5 0.8889 4 11.99 MINOR ENSMUSG00000027104 Atf2 ENSMUST00000112017 ENSMUSP00000107648 TRANSLATION protein_coding - CCDS16134.1 5 487.0 4.0 3.66 14.3 48.1 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000027201 Myef2 ENSMUST00000149911 - NO_TRANSLATION retained_intron ENSMUSG00000027201 Myef2 ENSMUST00000089825 ENSMUSP00000087258 TRANSLATION protein_coding start - 1 530.0 0.0 5.45 0.0 184.1 0.0 -4,-5 0.0318 3 -2.0 MINOR ENSMUSG00000027201 Myef2 ENSMUST00000152367 ENSMUSP00000123088 TRANSLATION protein_coding - CCDS50691.1 1 591.0 0.0 5.45 4.6 184.1 0.0 -4,-5 0.9954 3 9.674 ALTERNATIVE:1 ENSMUSG00000027201 Myef2 ENSMUST00000147105 ENSMUSP00000114817 TRANSLATION protein_coding - CCDS50689.1 1 550.0 0.0 4.2625 2.6 184.1 0.0 -4,-5 0.7399 3 6.368 MINOR ENSMUSG00000027201 Myef2 ENSMUST00000110501 ENSMUSP00000106127 TRANSLATION nonsense_mediated_decay - CCDS50690.1 1 574.0 0.0 5.45 3.6 184.1 0.0 -4,-5 1.0 3 -2.0 MINOR ENSMUSG00000027201 Myef2 ENSMUST00000137091 ENSMUSP00000123222 TRANSLATION protein_coding start/stop - 1 446.0 0.0 3.95 0.0 116.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027201 Myef2 ENSMUST00000142718 ENSMUSP00000115519 TRANSLATION protein_coding - - 5 567.0 0.0 5.45 5.3 184.1 0.0 -4,-5 0.9272 3 10.0 ALTERNATIVE:1 ENSMUSG00000027201 Myef2 ENSMUST00000129945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027201 Myef2 ENSMUST00000067780 ENSMUSP00000066312 TRANSLATION protein_coding - CCDS50690.1 5 574.0 0.0 5.45 3.6 184.1 0.0 -4,-5 1.0 3 9.21 PRINCIPAL:4 ENSMUSG00000075156 Or5w10 ENSMUST00000102624 ENSMUSP00000099684 TRANSLATION protein_coding - CCDS16295.1 - 311.0 0.0 1.0 8.2 155.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027173 Depdc7 ENSMUST00000028595 ENSMUSP00000028595 TRANSLATION protein_coding - CCDS16492.1 1 511.0 0.0 2.72 9.4 67.0 0.0 -4,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000027173 Depdc7 ENSMUST00000144133 - NO_TRANSLATION retained_intron ENSMUSG00000036591 Arhgap21 ENSMUST00000131394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036591 Arhgap21 ENSMUST00000143491 - NO_TRANSLATION retained_intron ENSMUSG00000036591 Arhgap21 ENSMUST00000127512 - NO_TRANSLATION retained_intron ENSMUSG00000036591 Arhgap21 ENSMUST00000114594 ENSMUSP00000110241 TRANSLATION protein_coding - - 5 1949.0 5.0 9.93 0.3 260.5 0.0 -4,-5 0.5176 37 13.0 ALTERNATIVE:2 ENSMUSG00000036591 Arhgap21 ENSMUST00000154657 - NO_TRANSLATION retained_intron ENSMUSG00000036591 Arhgap21 ENSMUST00000136241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036591 Arhgap21 ENSMUST00000173784 ENSMUSP00000133539 TRANSLATION protein_coding start/stop - 5 396.0 5.0 5.27 0.0 179.4 0.0 -4,-6 0.0 12 -2.0 MINOR ENSMUSG00000036591 Arhgap21 ENSMUST00000141298 ENSMUSP00000120357 TRANSLATION protein_coding - CCDS50512.1 5 1955.0 5.0 9.93 0.4 260.5 0.0 -4,-5 0.66 38 13.0 ALTERNATIVE:2 ENSMUSG00000036591 Arhgap21 ENSMUST00000156142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036591 Arhgap21 ENSMUST00000173654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036591 Arhgap21 ENSMUST00000125783 ENSMUSP00000123403 TRANSLATION protein_coding stop - 5 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.009 1 -2.0 MINOR ENSMUSG00000036591 Arhgap21 ENSMUST00000131542 - NO_TRANSLATION retained_intron ENSMUSG00000036591 Arhgap21 ENSMUST00000174584 ENSMUSP00000133347 TRANSLATION protein_coding start - 5 1263.0 5.0 6.27 0.0 222.9 0.0 -4,-5 0.0272 27 -2.0 MINOR ENSMUSG00000036591 Arhgap21 ENSMUST00000173194 ENSMUSP00000133851 TRANSLATION protein_coding - CCDS38054.2 1 1945.0 5.0 9.93 0.3 260.5 0.0 -4,-5 1.0 37 13.0 PRINCIPAL:2 ENSMUSG00000036591 Arhgap21 ENSMUST00000174825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036591 Arhgap21 ENSMUST00000140230 ENSMUSP00000122271 TRANSLATION protein_coding stop - 5 145.0 0.0 2.83 0.0 33.2 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000036591 Arhgap21 ENSMUST00000173566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036591 Arhgap21 ENSMUST00000154230 ENSMUSP00000122497 TRANSLATION protein_coding - CCDS50512.1 1 1955.0 5.0 9.93 0.4 260.5 0.0 -4,-5 0.66 38 13.0 ALTERNATIVE:2 ENSMUSG00000075110 Or4c109 ENSMUST00000217469 ENSMUSP00000150322 TRANSLATION protein_coding - CCDS16359.1 5 311.0 0.0 1.0 6.8 152.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075110 Or4c109 ENSMUST00000216026 ENSMUSP00000149049 TRANSLATION protein_coding - CCDS16359.1 5 311.0 0.0 1.0 6.8 152.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075110 Or4c109 ENSMUST00000099804 ENSMUSP00000097392 TRANSLATION protein_coding - CCDS16359.1 - 311.0 0.0 1.0 6.8 152.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035226 Rims4 ENSMUST00000044734 ENSMUSP00000045637 TRANSLATION protein_coding - CCDS17018.1 1 269.0 0.0 3.8 29.4 56.2 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000017733 Eppin ENSMUST00000103100 ENSMUSP00000099389 TRANSLATION protein_coding - CCDS17043.1 1 134.0 0.0 2.0 2.7 103.0 0.0 3,-3 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000111715 Or4a73 ENSMUST00000213221 ENSMUSP00000149863 TRANSLATION protein_coding - CCDS16385.1 5 314.0 0.0 1.0 5.1 158.1 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111715 Or4a73 ENSMUST00000217254 ENSMUSP00000150876 TRANSLATION protein_coding - CCDS16385.1 5 314.0 0.0 1.0 5.1 158.1 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111715 Or4a73 ENSMUST00000217192 ENSMUSP00000149252 TRANSLATION protein_coding - CCDS16385.1 5 314.0 0.0 1.0 5.1 158.1 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111715 Or4a73 ENSMUST00000187990 ENSMUSP00000140066 TRANSLATION protein_coding - CCDS16385.1 - 314.0 0.0 1.0 5.1 158.1 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000015095 Fbxw5 ENSMUST00000135456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015095 Fbxw5 ENSMUST00000135511 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015095 Fbxw5 ENSMUST00000148845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015095 Fbxw5 ENSMUST00000129104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015095 Fbxw5 ENSMUST00000124258 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015095 Fbxw5 ENSMUST00000126601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015095 Fbxw5 ENSMUST00000015239 ENSMUSP00000015239 TRANSLATION protein_coding - CCDS15778.1 1 573.0 0.0 2.57 2.5 78.8 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000015095 Fbxw5 ENSMUST00000142004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015095 Fbxw5 ENSMUST00000124375 ENSMUSP00000117676 TRANSLATION protein_coding start/stop - 5 246.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000017000 Svs6 ENSMUST00000017144 ENSMUSP00000017144 TRANSLATION protein_coding - CCDS17031.1 1 99.0 0.0 0.0 0.1 0.0 0.0 4,-1 0.9444 7 0.0 PRINCIPAL:1 ENSMUSG00000039476 Prrx2 ENSMUST00000041659 ENSMUSP00000040332 TRANSLATION protein_coding - CCDS15888.1 1 247.0 0.0 1.5 3.7 112.7 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:2 ENSMUSG00000039476 Prrx2 ENSMUST00000150299 - NO_TRANSLATION retained_intron ENSMUSG00000039476 Prrx2 ENSMUST00000137924 - NO_TRANSLATION retained_intron ENSMUSG00000039476 Prrx2 ENSMUST00000113592 ENSMUSP00000109222 TRANSLATION protein_coding - - 1 175.0 0.0 1.5 0.0 112.7 0.0 -4,-6 0.0336 - 8.0 ALTERNATIVE:2 ENSMUSG00000075112 Or4c15 ENSMUST00000215205 ENSMUSP00000150571 TRANSLATION protein_coding - CCDS16356.1 5 311.0 0.0 1.0 9.3 164.7 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075112 Or4c15 ENSMUST00000213412 ENSMUSP00000150336 TRANSLATION protein_coding - CCDS16356.1 5 311.0 0.0 1.0 9.3 164.7 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075112 Or4c15 ENSMUST00000141958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075112 Or4c15 ENSMUST00000099808 ENSMUSP00000097396 TRANSLATION protein_coding - CCDS16356.1 - 311.0 0.0 1.0 9.3 164.7 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049897 Stkld1 ENSMUST00000153771 ENSMUSP00000121332 TRANSLATION protein_coding stop - 5 116.0 0.0 1.63 0.0 21.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000049897 Stkld1 ENSMUST00000055406 ENSMUSP00000062967 TRANSLATION protein_coding - CCDS15818.1 1 662.0 0.0 3.895 0.0 115.8 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000068267 Cenpb ENSMUST00000089510 ENSMUSP00000086938 TRANSLATION protein_coding - CCDS16757.1 - 599.0 0.0 0.4 2.0 483.0 0.0 -4,-6 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000057234 Mettl15 ENSMUST00000081631 ENSMUSP00000080337 TRANSLATION protein_coding - CCDS16506.1 1 406.0 20.0 4.15 9.6 28.0 0.0 -4,-1 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000057234 Mettl15 ENSMUST00000147376 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057234 Mettl15 ENSMUST00000138533 - NO_TRANSLATION retained_intron ENSMUSG00000057234 Mettl15 ENSMUST00000147770 ENSMUSP00000116829 TRANSLATION protein_coding stop - 3 230.0 19.0 3.0 0.0 28.0 0.0 -4,-1 0.0207 1 -2.0 MINOR ENSMUSG00000057234 Mettl15 ENSMUST00000145535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027468 Defb22 ENSMUST00000028966 ENSMUSP00000028966 TRANSLATION protein_coding - CCDS16887.1 1 179.0 0.0 1.25 0.0 34.8 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000026873 Phf19 ENSMUST00000202907 ENSMUSP00000143954 TRANSLATION protein_coding stop - 5 88.0 0.0 1.35 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026873 Phf19 ENSMUST00000028232 ENSMUSP00000028232 TRANSLATION protein_coding - CCDS15955.1 1 578.0 15.0 8.85 7.6 122.4 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000026873 Phf19 ENSMUST00000129911 - NO_TRANSLATION retained_intron ENSMUSG00000026873 Phf19 ENSMUST00000128394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026873 Phf19 ENSMUST00000128663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109403 Or4f58 ENSMUST00000215321 ENSMUSP00000150617 TRANSLATION protein_coding - CCDS16541.1 5 312.0 0.0 1.0 12.5 147.4 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109403 Or4f58 ENSMUST00000208536 ENSMUSP00000147024 TRANSLATION protein_coding - CCDS16541.1 - 312.0 0.0 1.0 12.5 147.4 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109403 Or4f58 ENSMUST00000216319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109403 Or4f58 ENSMUST00000213602 ENSMUSP00000151010 TRANSLATION protein_coding - CCDS16541.1 5 312.0 0.0 1.0 12.5 147.4 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037514 Pank2 ENSMUST00000131779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037514 Pank2 ENSMUST00000150843 ENSMUSP00000119606 TRANSLATION protein_coding - - 1 456.0 19.0 7.844 0.0 389.2 0.0 -4,-7 0.7917 7 18.0 PRINCIPAL:1 ENSMUSG00000037514 Pank2 ENSMUST00000183388 ENSMUSP00000139197 TRANSLATION nonsense_mediated_decay start - 1 77.0 0.0 2.0 0.0 33.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037514 Pank2 ENSMUST00000138509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037514 Pank2 ENSMUST00000145904 ENSMUSP00000115034 TRANSLATION protein_coding start - 5 183.0 3.0 4.764 0.0 104.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000037514 Pank2 ENSMUST00000183349 ENSMUSP00000139203 TRANSLATION nonsense_mediated_decay start - 3 131.0 8.0 2.08 0.0 137.6 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000037514 Pank2 ENSMUST00000184105 ENSMUSP00000138992 TRANSLATION nonsense_mediated_decay start - 5 167.0 0.0 1.764 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000037514 Pank2 ENSMUST00000184932 ENSMUSP00000139259 TRANSLATION nonsense_mediated_decay start - 2 157.0 0.0 1.764 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000075075 Or4a80 ENSMUST00000215988 ENSMUSP00000151024 TRANSLATION protein_coding - CCDS50628.1 5 318.0 0.0 1.0 0.4 153.0 4.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075075 Or4a80 ENSMUST00000099765 ENSMUSP00000097353 TRANSLATION protein_coding - CCDS50628.1 - 318.0 0.0 1.0 0.4 153.0 4.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075075 Or4a80 ENSMUST00000215185 ENSMUSP00000151139 TRANSLATION protein_coding - CCDS50628.1 5 318.0 0.0 1.0 0.4 153.0 4.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075075 Or4a80 ENSMUST00000213484 ENSMUSP00000149312 TRANSLATION protein_coding - CCDS50628.1 5 318.0 0.0 1.0 0.4 153.0 4.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044923 Or5m5 ENSMUST00000056849 ENSMUSP00000053309 TRANSLATION protein_coding - CCDS16231.1 5 318.0 0.0 1.0 8.8 193.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000055485 Soga1 ENSMUST00000153229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055485 Soga1 ENSMUST00000133571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055485 Soga1 ENSMUST00000069098 ENSMUSP00000066556 TRANSLATION protein_coding - CCDS50781.1 1 1654.0 0.0 0.0 3.5 287.3 0.0 -4,-5 1.0 20 7.0 PRINCIPAL:1 ENSMUSG00000006476 Nsmf ENSMUST00000140733 - NO_TRANSLATION retained_intron ENSMUSG00000006476 Nsmf ENSMUST00000141866 - NO_TRANSLATION retained_intron ENSMUSG00000006476 Nsmf ENSMUST00000152122 ENSMUSP00000121580 TRANSLATION protein_coding stop - 5 210.0 0.0 1.43 0.0 13.9 0.0 -4,0 0.0168 4 -2.0 MINOR ENSMUSG00000006476 Nsmf ENSMUST00000102931 ENSMUSP00000099995 TRANSLATION protein_coding - CCDS15747.1 5 509.0 0.0 6.18 7.9 0.0 0.0 -4,0 0.7925 11 8.0 MINOR ENSMUSG00000006476 Nsmf ENSMUST00000114386 ENSMUSP00000110028 TRANSLATION protein_coding - - 5 479.0 0.0 6.18 7.9 0.0 0.0 -4,0 0.5818 11 8.0 MINOR ENSMUSG00000006476 Nsmf ENSMUST00000124309 - NO_TRANSLATION retained_intron ENSMUSG00000006476 Nsmf ENSMUST00000132172 ENSMUSP00000116106 TRANSLATION protein_coding stop - 5 83.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0005 2 -2.0 MINOR ENSMUSG00000006476 Nsmf ENSMUST00000114388 ENSMUSP00000110030 TRANSLATION protein_coding - CCDS50523.1 1 500.0 0.0 6.18 7.9 13.9 0.0 -4,0 0.9137 11 10.0 ALTERNATIVE:1 ENSMUSG00000006476 Nsmf ENSMUST00000155909 - NO_TRANSLATION retained_intron ENSMUSG00000006476 Nsmf ENSMUST00000006646 ENSMUSP00000006646 TRANSLATION protein_coding - CCDS15746.1 1 530.0 0.0 6.18 7.9 13.9 0.0 -4,0 1.0 11 10.0 PRINCIPAL:4 ENSMUSG00000006476 Nsmf ENSMUST00000134744 ENSMUSP00000120376 TRANSLATION protein_coding start - 5 282.0 0.0 6.18 0.0 0.0 0.0 -4,-2 0.0262 5 -2.0 MINOR ENSMUSG00000006476 Nsmf ENSMUST00000144520 ENSMUSP00000141583 TRANSLATION nonsense_mediated_decay - - 5 328.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.033 7 -2.0 MINOR ENSMUSG00000006476 Nsmf ENSMUST00000140737 ENSMUSP00000141410 TRANSLATION protein_coding - - 5 164.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.026 2 0.0 MINOR ENSMUSG00000006476 Nsmf ENSMUST00000074422 ENSMUSP00000074022 TRANSLATION protein_coding - - 1 507.0 0.0 6.18 7.9 0.0 0.0 -4,0 0.6354 10 8.0 MINOR ENSMUSG00000006476 Nsmf ENSMUST00000152506 - NO_TRANSLATION retained_intron ENSMUSG00000006476 Nsmf ENSMUST00000135328 - NO_TRANSLATION retained_intron ENSMUSG00000006476 Nsmf ENSMUST00000116574 ENSMUSP00000112273 TRANSLATION protein_coding - - 5 509.0 0.0 6.18 7.9 0.0 0.0 -4,0 0.6581 10 8.0 MINOR ENSMUSG00000006476 Nsmf ENSMUST00000100334 ENSMUSP00000097908 TRANSLATION protein_coding - CCDS15745.1 1 532.0 0.0 6.18 7.9 0.0 0.0 -4,0 0.8759 11 8.0 MINOR ENSMUSG00000051177 Plcb1 ENSMUST00000110116 ENSMUSP00000105743 TRANSLATION protein_coding - CCDS50729.1 1 1216.0 10.0 22.05 16.4 601.2 0.0 -4,-5 1.0 39 22.0 PRINCIPAL:1 ENSMUSG00000051177 Plcb1 ENSMUST00000131552 ENSMUSP00000118756 TRANSLATION protein_coding - CCDS16787.1 1 1173.0 10.0 21.85 9.0 567.2 0.0 -4,-5 0.6886 37 17.634 MINOR ENSMUSG00000051177 Plcb1 ENSMUST00000070724 ENSMUSP00000064844 TRANSLATION protein_coding - CCDS16787.1 1 1173.0 10.0 21.85 9.0 567.2 0.0 -4,-5 0.6886 37 17.634 MINOR ENSMUSG00000051177 Plcb1 ENSMUST00000129382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051177 Plcb1 ENSMUST00000201524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051177 Plcb1 ENSMUST00000202531 - NO_TRANSLATION retained_intron ENSMUSG00000051177 Plcb1 ENSMUST00000201485 ENSMUSP00000144399 TRANSLATION nonsense_mediated_decay start - 3 59.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000051177 Plcb1 ENSMUST00000130524 - NO_TRANSLATION retained_intron ENSMUSG00000074918 Inafm2 ENSMUST00000149978 ENSMUSP00000150273 TRANSLATION protein_coding - - - 152.0 0.0 0.0 7.5 60.1 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000074656 Eif2s2 ENSMUST00000135524 - NO_TRANSLATION retained_intron ENSMUSG00000074656 Eif2s2 ENSMUST00000147136 - NO_TRANSLATION retained_intron ENSMUSG00000074656 Eif2s2 ENSMUST00000099173 ENSMUSP00000096777 TRANSLATION protein_coding - CCDS38292.1 1 331.0 4.0 3.25 31.9 140.3 0.0 -4,-5 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000074656 Eif2s2 ENSMUST00000161172 ENSMUSP00000125248 TRANSLATION protein_coding stop - 2 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000075102 Or4c116 ENSMUST00000217635 ENSMUSP00000149330 TRANSLATION protein_coding - CCDS16366.1 5 311.0 0.0 1.0 9.4 162.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075102 Or4c116 ENSMUST00000143255 ENSMUSP00000150194 TRANSLATION protein_coding - CCDS16366.1 3 311.0 0.0 1.0 9.4 162.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075102 Or4c116 ENSMUST00000213404 ENSMUSP00000149122 TRANSLATION protein_coding - CCDS16366.1 5 311.0 0.0 1.0 9.4 162.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075102 Or4c116 ENSMUST00000099795 ENSMUSP00000097383 TRANSLATION protein_coding - CCDS16366.1 - 311.0 0.0 1.0 9.4 162.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042631 Xkr7 ENSMUST00000037235 ENSMUSP00000049346 TRANSLATION protein_coding - CCDS16905.1 1 580.0 0.0 0.0 3.5 407.8 0.0 -4,-6 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000075302 Erich2 ENSMUST00000123137 - NO_TRANSLATION retained_intron ENSMUSG00000075302 Erich2 ENSMUST00000153121 ENSMUSP00000120262 TRANSLATION protein_coding start - 5 81.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0155 - -2.0 MINOR ENSMUSG00000075302 Erich2 ENSMUST00000136967 - NO_TRANSLATION retained_intron ENSMUSG00000075302 Erich2 ENSMUST00000100041 ENSMUSP00000097619 TRANSLATION protein_coding - CCDS38141.1 1 463.0 0.0 2.1 0.0 0.0 0.0 -4,-6 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000075302 Erich2 ENSMUST00000134607 ENSMUSP00000122481 TRANSLATION protein_coding - - 5 437.0 0.0 2.1 0.1 0.0 0.0 -4,-6 0.0726 1 6.0 ALTERNATIVE:2 ENSMUSG00000027620 Rbm39 ENSMUST00000109587 ENSMUSP00000105216 TRANSLATION protein_coding - CCDS16964.1 1 530.0 0.0 8.15 19.1 221.5 0.0 -4,-5 0.9681 17 10.86 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000154677 ENSMUSP00000121603 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000128243 - NO_TRANSLATION retained_intron ENSMUSG00000027620 Rbm39 ENSMUST00000132929 - NO_TRANSLATION retained_intron ENSMUSG00000027620 Rbm39 ENSMUST00000137566 ENSMUSP00000119054 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000153514 ENSMUSP00000119204 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000152919 ENSMUSP00000124018 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000131625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027620 Rbm39 ENSMUST00000135274 - NO_TRANSLATION retained_intron ENSMUSG00000027620 Rbm39 ENSMUST00000146549 ENSMUSP00000115488 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000137297 - NO_TRANSLATION retained_intron ENSMUSG00000027620 Rbm39 ENSMUST00000126992 ENSMUSP00000116950 TRANSLATION protein_coding stop - 5 273.0 0.0 3.1 0.0 42.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000147098 ENSMUSP00000120597 TRANSLATION nonsense_mediated_decay - - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000109584 ENSMUSP00000105213 TRANSLATION protein_coding - - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000140001 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027620 Rbm39 ENSMUST00000142071 ENSMUSP00000116820 TRANSLATION nonsense_mediated_decay - - 5 415.0 0.0 4.65 0.0 182.7 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000138381 - NO_TRANSLATION retained_intron ENSMUSG00000027620 Rbm39 ENSMUST00000146288 ENSMUSP00000114824 TRANSLATION protein_coding stop - 5 156.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000137340 - NO_TRANSLATION retained_intron ENSMUSG00000027620 Rbm39 ENSMUST00000029149 ENSMUSP00000029149 TRANSLATION protein_coding - CCDS71168.1 1 524.0 0.0 8.15 22.1 223.9 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000027620 Rbm39 ENSMUST00000130516 - NO_TRANSLATION retained_intron ENSMUSG00000027620 Rbm39 ENSMUST00000155837 ENSMUSP00000119541 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000150272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027620 Rbm39 ENSMUST00000148794 ENSMUSP00000117462 TRANSLATION protein_coding start/stop - 5 311.0 0.0 5.55 0.0 137.1 0.0 -4,-5 0.0088 10 -2.0 MINOR ENSMUSG00000027620 Rbm39 ENSMUST00000146297 ENSMUSP00000119298 TRANSLATION protein_coding - CCDS71168.1 1 524.0 0.0 8.15 22.1 223.9 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000027199 Gatm ENSMUST00000140808 - NO_TRANSLATION retained_intron ENSMUSG00000027199 Gatm ENSMUST00000028624 ENSMUSP00000028624 TRANSLATION protein_coding - CCDS16665.1 1 423.0 13.0 7.55 33.0 0.0 0.0 -4,0 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000027199 Gatm ENSMUST00000154598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000107167 B3galt9 ENSMUST00000201786 ENSMUSP00000149256 TRANSLATION protein_coding - - 5 368.0 0.0 1.0 12.5 113.2 0.0 -1,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026679 Enkur ENSMUST00000147793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026679 Enkur ENSMUST00000156248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026679 Enkur ENSMUST00000027992 ENSMUSP00000027992 TRANSLATION protein_coding - CCDS38055.1 1 255.0 0.0 4.0 18.4 99.1 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000038987 Cfap157 ENSMUST00000150918 - NO_TRANSLATION retained_intron ENSMUSG00000038987 Cfap157 ENSMUST00000102813 ENSMUSP00000099877 TRANSLATION protein_coding - CCDS15932.1 1 523.0 0.0 0.765 1.9 0.0 0.0 -4,-5 1.0 5 7.0 PRINCIPAL:1 ENSMUSG00000038932 Tcfl5 ENSMUST00000037877 ENSMUSP00000040611 TRANSLATION protein_coding - CCDS17181.2 1 489.0 0.0 0.0 0.4 38.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038932 Tcfl5 ENSMUST00000131881 - NO_TRANSLATION retained_intron ENSMUSG00000038932 Tcfl5 ENSMUST00000161425 ENSMUSP00000125945 TRANSLATION nonsense_mediated_decay - - 5 292.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0025 - -2.0 MINOR ENSMUSG00000026749 Nek6 ENSMUST00000156726 ENSMUSP00000114376 TRANSLATION protein_coding stop - 5 108.0 11.0 2.18 0.0 45.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000026749 Nek6 ENSMUST00000151683 ENSMUSP00000120294 TRANSLATION protein_coding stop - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026749 Nek6 ENSMUST00000054234 ENSMUSP00000049723 TRANSLATION protein_coding - CCDS16009.1 1 313.0 19.0 7.73 25.0 219.1 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000026749 Nek6 ENSMUST00000112902 ENSMUSP00000108523 TRANSLATION protein_coding - - 1 302.0 19.0 7.63 0.0 219.1 0.0 -4,-7 0.0554 3 17.802 MINOR ENSMUSG00000026749 Nek6 ENSMUST00000112895 ENSMUSP00000108516 TRANSLATION protein_coding - CCDS16009.1 1 313.0 19.0 7.73 25.0 219.1 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000070883 Cfap210 ENSMUST00000094942 ENSMUSP00000092548 TRANSLATION protein_coding - CCDS38138.1 1 547.0 0.0 0.0 2.7 55.9 0.0 -4,-7 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000070883 Cfap210 ENSMUST00000148190 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015087 Rabl6 ENSMUST00000150206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015087 Rabl6 ENSMUST00000140778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015087 Rabl6 ENSMUST00000143855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015087 Rabl6 ENSMUST00000140785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015087 Rabl6 ENSMUST00000135084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015087 Rabl6 ENSMUST00000146012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015087 Rabl6 ENSMUST00000128942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015087 Rabl6 ENSMUST00000140635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015087 Rabl6 ENSMUST00000058137 ENSMUSP00000058746 TRANSLATION protein_coding - CCDS38076.1 1 725.0 15.0 5.3 0.0 29.9 0.0 -4,-7 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000100899 Or5d39 ENSMUST00000099832 ENSMUSP00000097420 TRANSLATION protein_coding - CCDS16327.1 - 316.0 0.0 1.0 6.9 161.0 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000100899 Or5d39 ENSMUST00000216951 ENSMUSP00000149599 TRANSLATION protein_coding - CCDS16327.1 5 316.0 0.0 1.0 6.9 161.0 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000005233 Spc25 ENSMUST00000149401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005233 Spc25 ENSMUST00000112320 ENSMUSP00000107939 TRANSLATION protein_coding - CCDS57174.1 1 226.0 0.0 5.75 9.9 74.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000005233 Spc25 ENSMUST00000150505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005233 Spc25 ENSMUST00000167875 ENSMUSP00000128039 TRANSLATION protein_coding - CCDS16088.1 1 178.0 0.0 4.75 0.0 74.3 0.0 -4,-5 0.0535 4 10.002 MINOR ENSMUSG00000005233 Spc25 ENSMUST00000126638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005233 Spc25 ENSMUST00000127243 ENSMUSP00000120142 TRANSLATION protein_coding start - 1 211.0 0.0 4.75 0.0 74.3 0.0 -4,-2 0.0088 4 -2.0 MINOR ENSMUSG00000005233 Spc25 ENSMUST00000005365 ENSMUSP00000005365 TRANSLATION protein_coding - CCDS57174.1 1 226.0 0.0 5.75 9.9 74.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000005233 Spc25 ENSMUST00000149045 ENSMUSP00000120999 TRANSLATION protein_coding stop - 3 133.0 0.0 3.75 0.0 25.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000005233 Spc25 ENSMUST00000149643 ENSMUSP00000117415 TRANSLATION protein_coding stop - 5 167.0 0.0 4.25 0.1 0.0 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000074812 Spdye4c ENSMUST00000155430 ENSMUSP00000117916 TRANSLATION protein_coding - CCDS79844.1 5 339.0 0.0 3.35 0.4 171.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074812 Spdye4c ENSMUST00000144559 ENSMUSP00000140478 TRANSLATION nonsense_mediated_decay - CCDS79844.1 5 339.0 0.0 3.35 0.4 171.5 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000036352 Ubac1 ENSMUST00000148725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036352 Ubac1 ENSMUST00000146363 ENSMUSP00000117683 TRANSLATION protein_coding start/stop - 5 184.0 0.0 0.7485 0.0 30.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000036352 Ubac1 ENSMUST00000136750 ENSMUSP00000123115 TRANSLATION protein_coding start/stop - 5 260.0 0.0 1.7985 0.0 56.2 0.0 -4,-5 0.0344 6 -2.0 MINOR ENSMUSG00000036352 Ubac1 ENSMUST00000154336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036352 Ubac1 ENSMUST00000146898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036352 Ubac1 ENSMUST00000150608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036352 Ubac1 ENSMUST00000134990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036352 Ubac1 ENSMUST00000123275 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036352 Ubac1 ENSMUST00000036509 ENSMUSP00000040220 TRANSLATION protein_coding - CCDS15795.1 1 409.0 0.0 1.7985 12.1 60.6 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000026966 Ssna1 ENSMUST00000127176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026966 Ssna1 ENSMUST00000141470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026966 Ssna1 ENSMUST00000028342 ENSMUSP00000028342 TRANSLATION protein_coding - CCDS38071.1 1 119.0 0.0 2.5 9.8 0.0 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000026966 Ssna1 ENSMUST00000133697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089951 Zfp968-ps ENSMUST00000172025 ENSMUSP00000127044 TRANSLATION protein_coding - - 5 88.0 0.0 2.2 0.0 72.2 0.0 -4,-5 0.7366 - 8.0 PRINCIPAL:2 ENSMUSG00000089951 Zfp968-ps ENSMUST00000249364 ENSMUSP00000159721 TRANSLATION protein_coding - - - 69.0 0.0 1.75 0.0 72.2 0.0 -4,-5 0.0049 - 6.77 MINOR ENSMUSG00000089951 Zfp968-ps ENSMUST00000127687 ENSMUSP00000122299 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 72.2 0.0 -4,-5 0.005 - 6.77 MINOR ENSMUSG00000089951 Zfp968-ps ENSMUST00000108995 ENSMUSP00000104623 TRANSLATION protein_coding - - 2 79.0 0.0 1.95 0.0 72.2 0.0 -4,-5 0.0027 - 7.316 ALTERNATIVE:2 ENSMUSG00000089951 Zfp968-ps ENSMUST00000249363 ENSMUSP00000159720 TRANSLATION protein_coding - - - 70.0 0.0 1.75 0.0 72.2 0.0 -4,-5 0.0049 - 6.77 MINOR ENSMUSG00000075158 Or5as1 ENSMUST00000099860 ENSMUSP00000097446 TRANSLATION protein_coding - CCDS16283.1 - 312.0 0.0 1.0 10.8 183.2 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075158 Or5as1 ENSMUST00000216378 ENSMUSP00000150760 TRANSLATION protein_coding - CCDS16283.1 5 312.0 0.0 1.0 10.8 183.2 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075158 Or5as1 ENSMUST00000214492 ENSMUSP00000149747 TRANSLATION protein_coding - CCDS16283.1 5 312.0 0.0 1.0 10.8 183.2 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068040 Tm9sf4 ENSMUST00000141220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068040 Tm9sf4 ENSMUST00000149390 - NO_TRANSLATION retained_intron ENSMUSG00000068040 Tm9sf4 ENSMUST00000089027 ENSMUSP00000086422 TRANSLATION protein_coding - CCDS16906.1 1 643.0 0.0 0.0 11.5 684.1 0.0 3,-2 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000068040 Tm9sf4 ENSMUST00000134922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068040 Tm9sf4 ENSMUST00000137446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068040 Tm9sf4 ENSMUST00000152807 - NO_TRANSLATION retained_intron ENSMUSG00000068040 Tm9sf4 ENSMUST00000147978 - NO_TRANSLATION retained_intron ENSMUSG00000068040 Tm9sf4 ENSMUST00000145010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068040 Tm9sf4 ENSMUST00000140988 - NO_TRANSLATION retained_intron ENSMUSG00000068040 Tm9sf4 ENSMUST00000146477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070856 Or10ag53 ENSMUST00000217196 ENSMUSP00000150996 TRANSLATION protein_coding - CCDS16286.1 3 326.0 0.0 1.0 4.7 182.0 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070856 Or10ag53 ENSMUST00000214119 ENSMUSP00000150092 TRANSLATION protein_coding - CCDS16286.1 5 326.0 0.0 1.0 4.7 182.0 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070856 Or10ag53 ENSMUST00000081986 ENSMUSP00000080647 TRANSLATION protein_coding - CCDS16286.1 - 326.0 0.0 1.0 4.7 182.0 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070856 Or10ag53 ENSMUST00000213513 ENSMUSP00000150221 TRANSLATION protein_coding - CCDS16286.1 5 326.0 0.0 1.0 4.7 182.0 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038705 Gmeb2 ENSMUST00000141110 ENSMUSP00000115853 TRANSLATION nonsense_mediated_decay - - 1 78.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038705 Gmeb2 ENSMUST00000141003 ENSMUSP00000116854 TRANSLATION nonsense_mediated_decay - - 5 127.0 1.0 1.0 0.0 28.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038705 Gmeb2 ENSMUST00000123148 - NO_TRANSLATION retained_intron ENSMUSG00000038705 Gmeb2 ENSMUST00000147665 - NO_TRANSLATION retained_intron ENSMUSG00000038705 Gmeb2 ENSMUST00000049032 ENSMUSP00000037075 TRANSLATION protein_coding - CCDS17206.1 1 530.0 4.0 2.6 18.6 83.0 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000038705 Gmeb2 ENSMUST00000130475 ENSMUSP00000116479 TRANSLATION protein_coding stop - 5 215.0 4.0 2.6 0.0 83.0 0.0 -4,-5 0.0145 1 -2.0 MINOR ENSMUSG00000026816 Gtf3c5 ENSMUST00000150929 - NO_TRANSLATION retained_intron ENSMUSG00000026816 Gtf3c5 ENSMUST00000139553 ENSMUSP00000135165 TRANSLATION nonsense_mediated_decay - - 3 55.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026816 Gtf3c5 ENSMUST00000028157 ENSMUSP00000028157 TRANSLATION protein_coding - CCDS15842.1 1 514.0 0.0 1.55 3.8 276.3 0.0 -4,-5 0.8488 13 9.142 ALTERNATIVE:2 ENSMUSG00000026816 Gtf3c5 ENSMUST00000150699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026816 Gtf3c5 ENSMUST00000142054 - NO_TRANSLATION retained_intron ENSMUSG00000026816 Gtf3c5 ENSMUST00000139580 - NO_TRANSLATION retained_intron ENSMUSG00000026816 Gtf3c5 ENSMUST00000113889 ENSMUSP00000109521 TRANSLATION protein_coding - CCDS71012.1 1 520.0 0.0 1.55 5.9 276.3 0.0 -4,-5 1.0 13 10.0 PRINCIPAL:4 ENSMUSG00000009549 Srp14 ENSMUST00000138189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009549 Srp14 ENSMUST00000149615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009549 Srp14 ENSMUST00000110862 ENSMUSP00000106486 TRANSLATION protein_coding - - 2 97.0 0.0 2.2675 0.0 61.1 0.0 -4,-5 0.0005 3 8.208 MINOR ENSMUSG00000009549 Srp14 ENSMUST00000009693 ENSMUSP00000009693 TRANSLATION protein_coding - CCDS16577.1 1 110.0 0.0 3.16 1.5 91.9 0.0 -4,-5 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000044042 Fmn1 ENSMUST00000154834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044042 Fmn1 ENSMUST00000110954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044042 Fmn1 ENSMUST00000161731 ENSMUSP00000125052 TRANSLATION protein_coding - CCDS71112.1 1 1332.0 0.0 7.775 0.0 308.4 0.0 -4,-5 1.0 11 7.67 PRINCIPAL:2 ENSMUSG00000044042 Fmn1 ENSMUST00000145891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044042 Fmn1 ENSMUST00000152255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044042 Fmn1 ENSMUST00000238883 ENSMUSP00000159010 TRANSLATION protein_coding - - - 850.0 0.0 7.775 0.0 308.4 0.0 -4,-7 0.0904 6 7.67 ALTERNATIVE:2 ENSMUSG00000044042 Fmn1 ENSMUST00000150510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044042 Fmn1 ENSMUST00000153151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044042 Fmn1 ENSMUST00000081349 ENSMUSP00000080093 TRANSLATION protein_coding - CCDS71113.1 1 1204.0 0.0 7.775 0.0 308.4 0.0 -4,-5 0.4827 13 7.67 ALTERNATIVE:2 ENSMUSG00000044042 Fmn1 ENSMUST00000102547 ENSMUSP00000099606 TRANSLATION protein_coding - CCDS16559.1 1 1466.0 0.0 7.94 0.0 303.9 0.0 -4,-5 0.3184 12 6.0 MINOR ENSMUSG00000044042 Fmn1 ENSMUST00000099576 ENSMUSP00000097171 TRANSLATION protein_coding - - 5 1430.0 0.0 7.775 0.0 308.4 0.0 -4,-5 0.2748 12 7.67 ALTERNATIVE:2 ENSMUSG00000063275 Hacd1 ENSMUST00000091429 ENSMUSP00000088998 TRANSLATION protein_coding - CCDS50504.1 1 165.0 0.0 2.28 0.0 49.5 1.0 -4,-5 0.004 - 0.0 MINOR ENSMUSG00000063275 Hacd1 ENSMUST00000131730 ENSMUSP00000141406 TRANSLATION nonsense_mediated_decay - CCDS50504.1 1 165.0 0.0 2.28 0.0 49.5 1.0 -4,-5 0.004 - -2.0 MINOR ENSMUSG00000063275 Hacd1 ENSMUST00000114753 ENSMUSP00000110401 TRANSLATION protein_coding - CCDS50505.1 1 248.0 0.0 5.53 21.9 197.4 4.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000027133 Nop10 ENSMUST00000028553 ENSMUSP00000028553 TRANSLATION protein_coding - CCDS38198.1 1 64.0 0.0 1.5 28.9 84.3 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000094858 Or4k47 ENSMUST00000213398 ENSMUSP00000150543 TRANSLATION protein_coding - CCDS16530.1 2 312.0 0.0 1.0 8.3 162.4 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094858 Or4k47 ENSMUST00000099612 ENSMUSP00000097207 TRANSLATION protein_coding - CCDS16530.1 - 312.0 0.0 1.0 8.3 162.4 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027422 Rrbp1 ENSMUST00000132434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027422 Rrbp1 ENSMUST00000037875 ENSMUSP00000040560 TRANSLATION protein_coding - CCDS38253.1 1 701.0 0.0 0.0 0.0 96.3 1.0 -4,-5 1.0 11 0.0 PRINCIPAL:2 ENSMUSG00000027422 Rrbp1 ENSMUST00000136068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027422 Rrbp1 ENSMUST00000140511 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027422 Rrbp1 ENSMUST00000135367 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027422 Rrbp1 ENSMUST00000154649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027422 Rrbp1 ENSMUST00000016072 ENSMUSP00000016072 TRANSLATION protein_coding - CCDS38252.1 5 1464.0 0.0 0.0 0.0 96.3 1.0 -4,-5 0.5819 53 0.0 ALTERNATIVE:2 ENSMUSG00000027422 Rrbp1 ENSMUST00000155539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039463 Slc9a8 ENSMUST00000150326 - NO_TRANSLATION retained_intron ENSMUSG00000039463 Slc9a8 ENSMUST00000124139 - NO_TRANSLATION retained_intron ENSMUSG00000039463 Slc9a8 ENSMUST00000047815 ENSMUSP00000044185 TRANSLATION protein_coding - CCDS38339.1 1 576.0 0.0 5.82375 9.1 225.3 7.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000039463 Slc9a8 ENSMUST00000125855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039463 Slc9a8 ENSMUST00000141400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039463 Slc9a8 ENSMUST00000149607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039463 Slc9a8 ENSMUST00000155585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039463 Slc9a8 ENSMUST00000131956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039463 Slc9a8 ENSMUST00000109218 ENSMUSP00000104841 TRANSLATION protein_coding - CCDS84586.1 1 545.0 0.0 5.7 0.0 214.0 6.0 -4,-6 0.0919 1 11.076 MINOR ENSMUSG00000039463 Slc9a8 ENSMUST00000148454 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039463 Slc9a8 ENSMUST00000135353 - NO_TRANSLATION retained_intron ENSMUSG00000039463 Slc9a8 ENSMUST00000139673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032046 Abhd12 ENSMUST00000129228 ENSMUSP00000118501 TRANSLATION nonsense_mediated_decay - - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032046 Abhd12 ENSMUST00000156641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032046 Abhd12 ENSMUST00000056149 ENSMUSP00000053558 TRANSLATION protein_coding - CCDS50742.1 1 398.0 9.0 9.49 9.8 54.4 1.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000032046 Abhd12 ENSMUST00000141899 ENSMUSP00000122763 TRANSLATION nonsense_mediated_decay - - 1 298.0 6.0 6.344 0.0 54.4 1.0 -4,-5 0.0105 11 -2.0 MINOR ENSMUSG00000032046 Abhd12 ENSMUST00000145826 ENSMUSP00000122331 TRANSLATION nonsense_mediated_decay start - 5 56.0 0.0 1.25 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032046 Abhd12 ENSMUST00000138608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032046 Abhd12 ENSMUST00000155119 - NO_TRANSLATION retained_intron ENSMUSG00000044033 Ccdc141 ENSMUST00000175840 - NO_TRANSLATION retained_intron ENSMUSG00000044033 Ccdc141 ENSMUST00000131660 - NO_TRANSLATION retained_intron ENSMUSG00000044033 Ccdc141 ENSMUST00000164114 ENSMUSP00000128736 TRANSLATION protein_coding - CCDS38155.2 5 1531.0 0.0 0.8 7.6 68.2 0.0 -4,-6 1.0 28 14.0 PRINCIPAL:1 ENSMUSG00000044033 Ccdc141 ENSMUST00000133503 ENSMUSP00000120312 TRANSLATION nonsense_mediated_decay - - 2 78.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000044033 Ccdc141 ENSMUST00000028406 - NO_TRANSLATION retained_intron ENSMUSG00000044033 Ccdc141 ENSMUST00000154013 - NO_TRANSLATION retained_intron ENSMUSG00000044033 Ccdc141 ENSMUST00000180261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044033 Ccdc141 ENSMUST00000049544 ENSMUSP00000052945 TRANSLATION protein_coding - - 1 1451.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0819 27 0.0 MINOR ENSMUSG00000044033 Ccdc141 ENSMUST00000111833 ENSMUSP00000107464 TRANSLATION protein_coding - - 2 117.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000044033 Ccdc141 ENSMUST00000179467 ENSMUSP00000136847 TRANSLATION protein_coding start/stop - 3 154.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000044033 Ccdc141 ENSMUST00000179868 ENSMUSP00000136620 TRANSLATION protein_coding start - 5 157.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000087006 Gm13889 ENSMUST00000148314 ENSMUSP00000141051 TRANSLATION protein_coding - CCDS79830.1 - 123.0 3.0 0.4 11.4 179.2 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000087006 Gm13889 ENSMUST00000099689 ENSMUSP00000140709 TRANSLATION protein_coding - - - 246.0 3.0 0.4 0.4 179.2 0.0 -4,-2 0.2066 2 15.0 MINOR ENSMUSG00000027408 Cpxm1 ENSMUST00000130533 - NO_TRANSLATION retained_intron ENSMUSG00000027408 Cpxm1 ENSMUST00000028897 ENSMUSP00000028897 TRANSLATION protein_coding - CCDS16740.1 1 722.0 8.0 8.526 6.0 388.5 0.0 1,-2 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000026984 Il36a ENSMUST00000144442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026984 Il36a ENSMUST00000028361 ENSMUSP00000028361 TRANSLATION protein_coding - CCDS15734.1 1 160.0 0.0 3.198 2.4 56.4 0.0 -4,-6 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000027652 Ralgapb ENSMUST00000173458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027652 Ralgapb ENSMUST00000109486 ENSMUSP00000105112 TRANSLATION protein_coding - CCDS71179.1 1 1495.0 0.0 0.0 20.7 0.0 0.0 -4,-5 1.0 23 4.0 PRINCIPAL:4 ENSMUSG00000027652 Ralgapb ENSMUST00000150789 - NO_TRANSLATION retained_intron ENSMUSG00000027652 Ralgapb ENSMUST00000046274 ENSMUSP00000048430 TRANSLATION protein_coding - - 5 1491.0 0.0 0.0 20.7 0.0 0.0 -4,-5 0.8716 23 4.0 ALTERNATIVE:1 ENSMUSG00000027652 Ralgapb ENSMUST00000109485 ENSMUSP00000105111 TRANSLATION protein_coding - CCDS71178.1 1 1507.0 0.0 0.0 17.3 0.0 0.0 -4,-5 0.9749 23 3.308 ALTERNATIVE:1 ENSMUSG00000027652 Ralgapb ENSMUST00000173137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027652 Ralgapb ENSMUST00000150420 - NO_TRANSLATION retained_intron ENSMUSG00000027652 Ralgapb ENSMUST00000156281 ENSMUSP00000119595 TRANSLATION protein_coding stop - 2 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0443 - -2.0 MINOR ENSMUSG00000027652 Ralgapb ENSMUST00000143394 - NO_TRANSLATION retained_intron ENSMUSG00000027652 Ralgapb ENSMUST00000141497 ENSMUSP00000116481 TRANSLATION protein_coding start - 5 1173.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1157 17 -2.0 MINOR ENSMUSG00000075215 Or5g23 ENSMUST00000099921 ENSMUSP00000097505 TRANSLATION protein_coding - CCDS16211.1 - 314.0 0.0 1.0 12.5 167.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075215 Or5g23 ENSMUST00000216571 ENSMUSP00000150731 TRANSLATION protein_coding - CCDS16211.1 5 314.0 0.0 1.0 12.5 167.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075215 Or5g23 ENSMUST00000213837 ENSMUSP00000149982 TRANSLATION protein_coding - CCDS16211.1 3 314.0 0.0 1.0 12.5 167.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026965 Anapc2 ENSMUST00000125885 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026965 Anapc2 ENSMUST00000028341 ENSMUSP00000028341 TRANSLATION protein_coding - CCDS15761.1 1 837.0 0.0 10.835 0.0 176.6 0.0 -2,-4 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000026965 Anapc2 ENSMUST00000129265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026965 Anapc2 ENSMUST00000129300 ENSMUSP00000115177 TRANSLATION protein_coding start/stop - 5 185.0 0.0 3.08 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000026944 Abca2 ENSMUST00000141065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026944 Abca2 ENSMUST00000102919 ENSMUSP00000099983 TRANSLATION protein_coding - CCDS15773.1 1 2433.0 20.0 13.762 4.6 389.7 0.0 -4,-5 1.0 23 20.0 PRINCIPAL:1 ENSMUSG00000026944 Abca2 ENSMUST00000144560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026944 Abca2 ENSMUST00000125520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026944 Abca2 ENSMUST00000149385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026944 Abca2 ENSMUST00000143075 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026944 Abca2 ENSMUST00000150550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027012 Dync1i2 ENSMUST00000137683 - NO_TRANSLATION retained_intron ENSMUSG00000027012 Dync1i2 ENSMUST00000149735 - NO_TRANSLATION retained_intron ENSMUSG00000027012 Dync1i2 ENSMUST00000138613 - NO_TRANSLATION retained_intron ENSMUSG00000027012 Dync1i2 ENSMUST00000100028 ENSMUSP00000097605 TRANSLATION protein_coding - CCDS57175.1 5 632.0 0.0 11.0 21.6 70.6 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000027012 Dync1i2 ENSMUST00000112142 ENSMUSP00000107770 TRANSLATION protein_coding - CCDS57175.1 1 632.0 0.0 11.0 21.6 70.6 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000027012 Dync1i2 ENSMUST00000112144 ENSMUSP00000107772 TRANSLATION protein_coding - CCDS84536.1 5 638.0 0.0 11.0 15.4 70.6 0.0 -4,-5 0.9639 13 14.796 MINOR ENSMUSG00000027012 Dync1i2 ENSMUST00000112138 ENSMUSP00000107766 TRANSLATION protein_coding - CCDS16112.1 1 612.0 0.0 11.0 12.5 70.6 0.0 -4,-5 0.8964 13 14.232 MINOR ENSMUSG00000027012 Dync1i2 ENSMUST00000112140 ENSMUSP00000107768 TRANSLATION protein_coding - CCDS84536.1 5 638.0 0.0 11.0 15.4 70.6 0.0 -4,-5 0.9639 13 14.796 MINOR ENSMUSG00000027012 Dync1i2 ENSMUST00000112139 ENSMUSP00000107767 TRANSLATION protein_coding - - 5 611.0 0.0 11.0 12.5 70.6 0.0 -4,-5 0.7274 13 14.232 MINOR ENSMUSG00000027012 Dync1i2 ENSMUST00000112136 ENSMUSP00000107764 TRANSLATION protein_coding - - 5 637.0 0.0 11.0 11.4 70.6 0.0 -4,-5 0.7446 13 14.02 MINOR ENSMUSG00000027012 Dync1i2 ENSMUST00000141619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027012 Dync1i2 ENSMUST00000081710 ENSMUSP00000080410 TRANSLATION protein_coding - CCDS16112.1 1 612.0 0.0 11.0 12.5 70.6 0.0 -4,-5 0.8964 13 14.232 MINOR ENSMUSG00000027246 Ell3 ENSMUST00000028679 ENSMUSP00000028679 TRANSLATION protein_coding - CCDS16644.1 1 395.0 0.0 2.75 4.4 144.2 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000027246 Ell3 ENSMUST00000153866 - NO_TRANSLATION retained_intron ENSMUSG00000027246 Ell3 ENSMUST00000116432 ENSMUSP00000112133 TRANSLATION protein_coding - CCDS16644.1 1 395.0 0.0 2.75 4.4 144.2 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000027637 Rab5if ENSMUST00000152551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027637 Rab5if ENSMUST00000029165 ENSMUSP00000029165 TRANSLATION protein_coding - CCDS16970.1 1 129.0 0.0 2.5 29.9 63.1 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000027637 Rab5if ENSMUST00000152942 - NO_TRANSLATION retained_intron ENSMUSG00000027637 Rab5if ENSMUST00000126767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026785 Pkn3 ENSMUST00000156197 - NO_TRANSLATION retained_intron ENSMUSG00000026785 Pkn3 ENSMUST00000150770 ENSMUSP00000114492 TRANSLATION protein_coding stop - 3 113.0 0.0 0.8 0.0 51.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026785 Pkn3 ENSMUST00000125346 ENSMUSP00000120268 TRANSLATION protein_coding stop - 3 238.0 0.0 2.15 0.0 159.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026785 Pkn3 ENSMUST00000148650 - NO_TRANSLATION retained_intron ENSMUSG00000026785 Pkn3 ENSMUST00000137240 - NO_TRANSLATION retained_intron ENSMUSG00000026785 Pkn3 ENSMUST00000134591 - NO_TRANSLATION retained_intron ENSMUSG00000026785 Pkn3 ENSMUST00000126838 - NO_TRANSLATION retained_intron ENSMUSG00000026785 Pkn3 ENSMUST00000045246 ENSMUSP00000041025 TRANSLATION protein_coding - CCDS15867.1 1 878.0 18.0 9.95 2.2 385.4 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000075222 Or5ak20 ENSMUST00000111597 ENSMUSP00000107224 TRANSLATION protein_coding - CCDS16204.1 3 309.0 0.0 1.0 14.5 171.5 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075222 Or5ak20 ENSMUST00000099928 ENSMUSP00000097512 TRANSLATION protein_coding - CCDS16204.1 - 309.0 0.0 1.0 14.5 171.5 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075222 Or5ak20 ENSMUST00000215511 ENSMUSP00000151211 TRANSLATION protein_coding - CCDS16204.1 5 309.0 0.0 1.0 14.5 171.5 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038718 Pbx3 ENSMUST00000155423 - NO_TRANSLATION retained_intron ENSMUSG00000038718 Pbx3 ENSMUST00000141653 ENSMUSP00000115710 TRANSLATION protein_coding stop - 3 96.0 0.0 0.0 0.0 131.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038718 Pbx3 ENSMUST00000113132 ENSMUSP00000108757 TRANSLATION protein_coding - CCDS71033.1 1 351.0 0.0 2.4 25.0 382.6 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000038718 Pbx3 ENSMUST00000127353 ENSMUSP00000114695 TRANSLATION protein_coding stop - 3 54.0 0.0 0.0 0.0 81.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038718 Pbx3 ENSMUST00000153278 ENSMUSP00000123567 TRANSLATION nonsense_mediated_decay - - 5 93.0 0.0 0.0 0.0 71.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038718 Pbx3 ENSMUST00000040638 ENSMUSP00000045281 TRANSLATION protein_coding - CCDS15947.1 1 434.0 0.0 2.4 22.9 382.6 0.0 -4,-5 0.917 1 11.648 ALTERNATIVE:1 ENSMUSG00000038718 Pbx3 ENSMUST00000175855 ENSMUSP00000135838 TRANSLATION nonsense_mediated_decay start - 5 44.0 0.0 0.0 0.0 63.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038718 Pbx3 ENSMUST00000143776 ENSMUSP00000119914 TRANSLATION nonsense_mediated_decay - - 5 93.0 0.0 0.0 0.0 71.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038718 Pbx3 ENSMUST00000138021 ENSMUSP00000135226 TRANSLATION protein_coding stop - 3 128.0 0.0 0.0 0.0 178.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038718 Pbx3 ENSMUST00000176213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027411 Vps16 ENSMUST00000134677 - NO_TRANSLATION retained_intron ENSMUSG00000027411 Vps16 ENSMUST00000128994 ENSMUSP00000115899 TRANSLATION protein_coding stop - 5 316.0 0.0 0.0 0.0 236.1 0.0 -4,-5 0.0007 7 -2.0 MINOR ENSMUSG00000027411 Vps16 ENSMUST00000137084 - NO_TRANSLATION retained_intron ENSMUSG00000027411 Vps16 ENSMUST00000131220 - NO_TRANSLATION retained_intron ENSMUSG00000027411 Vps16 ENSMUST00000125098 - NO_TRANSLATION retained_intron ENSMUSG00000027411 Vps16 ENSMUST00000132388 - NO_TRANSLATION retained_intron ENSMUSG00000027411 Vps16 ENSMUST00000028900 ENSMUSP00000028900 TRANSLATION protein_coding - CCDS38242.1 1 839.0 0.0 4.748 29.4 1032.1 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000027411 Vps16 ENSMUST00000125973 - NO_TRANSLATION retained_intron ENSMUSG00000027411 Vps16 ENSMUST00000130258 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052056 Zfp217 ENSMUST00000125162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052056 Zfp217 ENSMUST00000109155 ENSMUSP00000104783 TRANSLATION protein_coding - CCDS17120.1 1 1041.0 24.0 1.132 0.0 57.5 0.0 -4,-6 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000052056 Zfp217 ENSMUST00000149318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052056 Zfp217 ENSMUST00000149088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052056 Zfp217 ENSMUST00000063710 ENSMUSP00000067334 TRANSLATION protein_coding - CCDS17120.1 1 1041.0 24.0 1.132 0.0 57.5 0.0 -4,-6 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000042064 Myo3b ENSMUST00000112241 ENSMUSP00000107860 TRANSLATION protein_coding - - 1 188.0 4.0 4.19 0.0 144.3 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000042064 Myo3b ENSMUST00000060208 ENSMUSP00000055362 TRANSLATION protein_coding - CCDS38139.1 5 1333.0 20.0 16.995 0.0 899.6 0.0 -4,-5 0.7313 6 14.0 ALTERNATIVE:2 ENSMUSG00000042064 Myo3b ENSMUST00000112243 ENSMUSP00000107862 TRANSLATION protein_coding - - 5 1305.0 20.0 16.995 0.3 899.6 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:2 ENSMUSG00000027270 Lamp5 ENSMUST00000144403 ENSMUSP00000120703 TRANSLATION protein_coding stop - 2 91.0 0.0 1.5 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000027270 Lamp5 ENSMUST00000143777 - NO_TRANSLATION retained_intron ENSMUSG00000027270 Lamp5 ENSMUST00000057503 ENSMUSP00000061180 TRANSLATION protein_coding - CCDS16789.1 1 280.0 0.0 5.5 14.8 81.7 0.0 -2,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000027270 Lamp5 ENSMUST00000154674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027270 Lamp5 ENSMUST00000123436 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049630 C1ql3 ENSMUST00000061545 ENSMUSP00000056188 TRANSLATION protein_coding - CCDS15692.1 1 255.0 0.0 1.6 26.6 166.4 0.0 3,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000109547 Or4k44 ENSMUST00000208334 ENSMUSP00000146492 TRANSLATION protein_coding - CCDS16528.1 - 312.0 0.0 1.0 8.3 173.7 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109547 Or4k44 ENSMUST00000208675 ENSMUSP00000146438 TRANSLATION protein_coding - CCDS16528.1 2 312.0 0.0 1.0 8.3 173.7 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027245 Hypk ENSMUST00000131870 - NO_TRANSLATION retained_intron ENSMUSG00000027245 Hypk ENSMUST00000028677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027245 Hypk ENSMUST00000126764 ENSMUSP00000117946 TRANSLATION protein_coding - CCDS16647.1 1 129.0 2.0 2.8 1.3 0.0 0.0 -4,-5 0.9863 4 9.0 PRINCIPAL:1 ENSMUSG00000027245 Hypk ENSMUST00000125849 - NO_TRANSLATION retained_intron ENSMUSG00000027245 Hypk ENSMUST00000110612 ENSMUSP00000106242 TRANSLATION protein_coding - CCDS16647.1 5 129.0 2.0 2.8 1.3 0.0 0.0 -4,-5 0.9863 4 9.0 PRINCIPAL:1 ENSMUSG00000058793 Cds2 ENSMUST00000110158 ENSMUSP00000105786 TRANSLATION protein_coding - CCDS79850.1 1 129.0 0.0 1.76 0.0 39.9 6.0 -4,-5 0.0148 3 0.0 MINOR ENSMUSG00000058793 Cds2 ENSMUST00000147456 ENSMUSP00000135497 TRANSLATION nonsense_mediated_decay - - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058793 Cds2 ENSMUST00000125060 ENSMUSP00000135710 TRANSLATION protein_coding stop - 2 33.0 0.0 1.16 0.0 0.0 3.0 -1,-5 0.0002 - -2.0 MINOR ENSMUSG00000058793 Cds2 ENSMUST00000138194 ENSMUSP00000121769 TRANSLATION protein_coding start - 5 194.0 0.0 3.25 0.0 108.6 2.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000058793 Cds2 ENSMUST00000103181 ENSMUSP00000099470 TRANSLATION protein_coding - CCDS16772.1 1 444.0 0.0 9.51 23.2 293.4 12.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000058793 Cds2 ENSMUST00000089461 ENSMUSP00000086886 TRANSLATION protein_coding - CCDS71150.1 1 427.0 0.0 9.51 0.0 293.4 12.0 -4,-6 0.2805 3 12.0 MINOR ENSMUSG00000075111 Or4c108 ENSMUST00000168169 ENSMUSP00000126588 TRANSLATION protein_coding - CCDS16358.1 2 311.0 0.0 1.0 5.5 158.1 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075111 Or4c108 ENSMUST00000144908 ENSMUSP00000149096 TRANSLATION protein_coding - CCDS16358.1 3 311.0 0.0 1.0 5.5 158.1 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079484 Phyhd1 ENSMUST00000138254 ENSMUSP00000116062 TRANSLATION nonsense_mediated_decay - - 5 180.0 3.0 4.16 0.0 90.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000079484 Phyhd1 ENSMUST00000154988 - NO_TRANSLATION retained_intron ENSMUSG00000079484 Phyhd1 ENSMUST00000150695 ENSMUSP00000121995 TRANSLATION protein_coding stop - 3 222.0 10.0 6.08 0.0 127.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000079484 Phyhd1 ENSMUST00000113643 ENSMUSP00000109273 TRANSLATION protein_coding - CCDS57164.1 5 270.0 11.0 7.74 2.1 202.7 0.0 -4,-5 0.0744 6 14.146 MINOR ENSMUSG00000079484 Phyhd1 ENSMUST00000091132 ENSMUSP00000088663 TRANSLATION protein_coding - CCDS15876.1 1 311.0 12.0 8.49 0.0 233.7 0.0 -4,-5 0.0759 7 18.0 MINOR ENSMUSG00000079484 Phyhd1 ENSMUST00000139719 ENSMUSP00000116450 TRANSLATION protein_coding stop - 2 220.0 8.0 6.16 0.0 183.7 0.0 -4,-5 0.0004 7 -2.0 MINOR ENSMUSG00000079484 Phyhd1 ENSMUST00000085290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079484 Phyhd1 ENSMUST00000113645 ENSMUSP00000109275 TRANSLATION protein_coding - CCDS57163.1 1 291.0 12.0 8.49 26.8 233.7 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000079484 Phyhd1 ENSMUST00000133877 ENSMUSP00000117643 TRANSLATION protein_coding stop - 5 249.0 11.0 6.83 0.0 225.5 0.0 -4,-7 0.0026 7 -2.0 MINOR ENSMUSG00000079484 Phyhd1 ENSMUST00000127689 ENSMUSP00000119543 TRANSLATION nonsense_mediated_decay - - 5 159.0 1.0 3.83 0.0 78.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000079484 Phyhd1 ENSMUST00000147204 ENSMUSP00000122095 TRANSLATION nonsense_mediated_decay start - 5 54.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000079484 Phyhd1 ENSMUST00000154647 ENSMUSP00000121371 TRANSLATION protein_coding - CCDS57163.1 1 291.0 12.0 8.49 26.8 233.7 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000079484 Phyhd1 ENSMUST00000129512 - NO_TRANSLATION retained_intron ENSMUSG00000027610 Gss ENSMUST00000175993 ENSMUSP00000135392 TRANSLATION protein_coding start - 5 216.0 19.0 5.5 0.0 249.3 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000027610 Gss ENSMUST00000140860 - NO_TRANSLATION retained_intron ENSMUSG00000027610 Gss ENSMUST00000130881 ENSMUSP00000135319 TRANSLATION protein_coding - CCDS71167.1 1 405.0 31.0 11.0 2.2 488.4 0.0 -4,-5 0.0653 12 11.374 MINOR ENSMUSG00000027610 Gss ENSMUST00000157008 - NO_TRANSLATION retained_intron ENSMUSG00000027610 Gss ENSMUST00000176415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027610 Gss ENSMUST00000079691 ENSMUSP00000078630 TRANSLATION protein_coding - CCDS16951.1 1 474.0 31.0 12.75 23.0 544.2 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000027610 Gss ENSMUST00000155347 ENSMUSP00000122662 TRANSLATION protein_coding stop - 3 179.0 9.0 4.75 0.0 173.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027610 Gss ENSMUST00000137305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027610 Gss ENSMUST00000126322 ENSMUSP00000117266 TRANSLATION protein_coding stop - 5 200.0 12.0 5.75 0.0 201.4 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000079008 Zfp1005 ENSMUST00000109922 ENSMUSP00000105548 TRANSLATION protein_coding - CCDS50739.1 3 715.0 86.0 1.0 0.1 471.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033486 Catsper2 ENSMUST00000123982 - NO_TRANSLATION retained_intron ENSMUSG00000033486 Catsper2 ENSMUST00000038073 ENSMUSP00000037222 TRANSLATION protein_coding - CCDS38216.1 1 588.0 0.0 6.08 0.0 114.1 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000033486 Catsper2 ENSMUST00000154604 ENSMUSP00000119091 TRANSLATION nonsense_mediated_decay - - 5 134.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033486 Catsper2 ENSMUST00000146521 - NO_TRANSLATION retained_intron ENSMUSG00000026853 Crat ENSMUST00000132981 ENSMUSP00000118507 TRANSLATION protein_coding stop - 5 205.0 3.0 4.58 0.0 182.6 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000026853 Crat ENSMUST00000156702 ENSMUSP00000117317 TRANSLATION nonsense_mediated_decay - - 2 36.0 0.0 0.0 0.0 0.0 0.0 -3,0 0.0004 - -2.0 MINOR ENSMUSG00000026853 Crat ENSMUST00000155790 ENSMUSP00000122814 TRANSLATION protein_coding start - 5 201.0 17.0 5.33 0.0 218.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026853 Crat ENSMUST00000129494 ENSMUSP00000122025 TRANSLATION protein_coding stop - 2 61.0 0.0 0.25 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026853 Crat ENSMUST00000146603 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026853 Crat ENSMUST00000028207 ENSMUSP00000028207 TRANSLATION protein_coding - CCDS15882.1 1 626.0 27.0 14.66 30.3 665.7 0.0 -4,-1 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000026853 Crat ENSMUST00000146822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026853 Crat ENSMUST00000142096 ENSMUSP00000119735 TRANSLATION protein_coding - - 2 58.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - 0.0 MINOR ENSMUSG00000026853 Crat ENSMUST00000134120 ENSMUSP00000117593 TRANSLATION protein_coding stop - 2 44.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026853 Crat ENSMUST00000102855 ENSMUSP00000099919 TRANSLATION protein_coding - CCDS15882.1 1 626.0 27.0 14.66 30.3 665.7 0.0 -4,-1 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000026853 Crat ENSMUST00000102854 ENSMUSP00000099918 TRANSLATION protein_coding - - 5 605.0 27.0 14.41 2.9 665.7 0.0 -4,-7 0.2358 26 17.762 MINOR ENSMUSG00000026853 Crat ENSMUST00000154595 ENSMUSP00000114925 TRANSLATION protein_coding start/stop - 3 132.0 9.0 3.58 0.0 114.1 0.0 -4,-6 0.0001 2 -2.0 MINOR ENSMUSG00000026853 Crat ENSMUST00000128593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095648 Gm2004 ENSMUST00000178872 ENSMUSP00000135992 TRANSLATION protein_coding - - 1 71.0 0.0 1.75 0.1 76.4 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000095648 Gm2004 ENSMUST00000109049 ENSMUSP00000104677 TRANSLATION protein_coding - - 5 582.0 71.0 2.75 0.1 461.4 0.0 -4,-5 0.8168 - 18.0 PRINCIPAL:1 ENSMUSG00000095648 Gm2004 ENSMUST00000179349 ENSMUSP00000136346 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000095648 Gm2004 ENSMUST00000249361 ENSMUSP00000159719 TRANSLATION protein_coding - - - 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000027377 Mall ENSMUST00000028856 ENSMUSP00000028856 TRANSLATION protein_coding - CCDS16708.1 1 154.0 0.0 3.15 15.6 39.8 0.0 -3,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025780 Itih5 ENSMUST00000026886 ENSMUSP00000026886 TRANSLATION protein_coding - CCDS15678.1 1 952.0 4.0 2.59 0.0 361.3 0.0 1,-2 1.0 28 16.0 PRINCIPAL:1 ENSMUSG00000027589 Pcmtd2 ENSMUST00000155970 - NO_TRANSLATION retained_intron ENSMUSG00000027589 Pcmtd2 ENSMUST00000139434 ENSMUSP00000115096 TRANSLATION protein_coding stop - 2 184.0 19.0 1.24 0.0 77.5 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000027589 Pcmtd2 ENSMUST00000029116 ENSMUSP00000029116 TRANSLATION protein_coding - CCDS17224.1 1 359.0 19.0 2.17 24.9 95.1 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000027589 Pcmtd2 ENSMUST00000145475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027589 Pcmtd2 ENSMUST00000137893 - NO_TRANSLATION retained_intron ENSMUSG00000027589 Pcmtd2 ENSMUST00000108754 ENSMUSP00000104385 TRANSLATION protein_coding - CCDS71224.1 1 276.0 19.0 1.67 0.1 90.6 0.0 -4,-5 0.0356 3 16.338 MINOR ENSMUSG00000027589 Pcmtd2 ENSMUST00000122811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027589 Pcmtd2 ENSMUST00000124346 ENSMUSP00000115743 TRANSLATION protein_coding start - 3 155.0 6.0 0.87 0.0 22.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000027589 Pcmtd2 ENSMUST00000142989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091337 Eid1 ENSMUST00000164756 ENSMUSP00000129413 TRANSLATION protein_coding - CCDS50696.1 - 159.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.8672 - 0.0 PRINCIPAL:1 ENSMUSG00000015090 Ptgds ENSMUST00000137417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015090 Ptgds ENSMUST00000114259 ENSMUSP00000109897 TRANSLATION protein_coding - CCDS38074.1 2 189.0 0.0 4.35 8.3 113.0 0.0 3,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000015090 Ptgds ENSMUST00000144016 - NO_TRANSLATION retained_intron ENSMUSG00000015090 Ptgds ENSMUST00000114251 ENSMUSP00000109889 TRANSLATION protein_coding - CCDS38074.1 5 189.0 0.0 4.35 8.3 113.0 0.0 3,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000015090 Ptgds ENSMUST00000015234 ENSMUSP00000015234 TRANSLATION protein_coding - CCDS38074.1 1 189.0 0.0 4.35 8.3 113.0 0.0 3,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000038116 Phf20 ENSMUST00000122814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038116 Phf20 ENSMUST00000147234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038116 Phf20 ENSMUST00000147242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038116 Phf20 ENSMUST00000131479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038116 Phf20 ENSMUST00000037401 ENSMUSP00000043138 TRANSLATION protein_coding - CCDS38297.1 1 1010.0 8.0 4.85 11.0 119.0 0.0 -4,-7 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000038116 Phf20 ENSMUST00000145731 ENSMUSP00000119756 TRANSLATION protein_coding stop - 3 113.0 0.0 2.5 0.0 25.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038116 Phf20 ENSMUST00000135796 - NO_TRANSLATION retained_intron ENSMUSG00000038116 Phf20 ENSMUST00000153822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038116 Phf20 ENSMUST00000132352 - NO_TRANSLATION retained_intron ENSMUSG00000038116 Phf20 ENSMUST00000132129 - NO_TRANSLATION retained_intron ENSMUSG00000038116 Phf20 ENSMUST00000152617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068373 D430041D05Rik ENSMUST00000136156 ENSMUSP00000155023 TRANSLATION protein_coding - - 5 1415.0 0.0 1.8 0.4 936.9 2.0 -4,-6 0.5206 20 8.0 ALTERNATIVE:2 ENSMUSG00000068373 D430041D05Rik ENSMUST00000089726 ENSMUSP00000106756 TRANSLATION protein_coding - CCDS38190.1 5 1414.0 0.0 1.8 0.4 934.1 2.0 -4,-6 0.7413 20 8.0 ALTERNATIVE:2 ENSMUSG00000068373 D430041D05Rik ENSMUST00000230671 ENSMUSP00000155485 TRANSLATION protein_coding - - - 2099.0 0.0 1.8 0.0 936.9 2.0 -4,-7 1.0 22 8.0 PRINCIPAL:2 ENSMUSG00000068373 D430041D05Rik ENSMUST00000155458 - NO_TRANSLATION retained_intron ENSMUSG00000068373 D430041D05Rik ENSMUST00000149165 - NO_TRANSLATION retained_intron ENSMUSG00000068373 D430041D05Rik ENSMUST00000141159 ENSMUSP00000117041 TRANSLATION protein_coding - - 5 1300.0 0.0 1.8 0.1 936.9 2.0 -4,-6 0.5229 20 8.0 ALTERNATIVE:2 ENSMUSG00000068373 D430041D05Rik ENSMUST00000156278 - NO_TRANSLATION retained_intron ENSMUSG00000027387 Zc3h8 ENSMUST00000028866 ENSMUSP00000028866 TRANSLATION protein_coding - CCDS16718.1 1 305.0 12.0 1.932 6.1 52.6 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000027510 Rbm38 ENSMUST00000029014 ENSMUSP00000029014 TRANSLATION protein_coding - CCDS17139.1 1 237.0 0.0 2.66 9.0 64.0 0.0 -4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000027510 Rbm38 ENSMUST00000173878 ENSMUSP00000133388 TRANSLATION nonsense_mediated_decay - - 3 78.0 0.0 1.198 0.0 39.3 0.0 -4,-2 0.0008 - -2.0 MINOR ENSMUSG00000027510 Rbm38 ENSMUST00000173997 ENSMUSP00000133464 TRANSLATION protein_coding stop - 5 125.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027510 Rbm38 ENSMUST00000173979 ENSMUSP00000133681 TRANSLATION protein_coding start - 3 29.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027510 Rbm38 ENSMUST00000130430 - NO_TRANSLATION retained_intron ENSMUSG00000027510 Rbm38 ENSMUST00000173720 ENSMUSP00000133757 TRANSLATION nonsense_mediated_decay start - 5 108.0 0.0 1.628 0.0 54.1 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000027510 Rbm38 ENSMUST00000173393 ENSMUSP00000133816 TRANSLATION protein_coding - CCDS17139.1 5 237.0 0.0 2.66 9.0 64.0 0.0 -4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000027510 Rbm38 ENSMUST00000155512 - NO_TRANSLATION retained_intron ENSMUSG00000039913 Pak5 ENSMUST00000143329 - NO_TRANSLATION retained_intron ENSMUSG00000039913 Pak5 ENSMUST00000035264 ENSMUSP00000047285 TRANSLATION protein_coding - CCDS16790.1 1 719.0 19.0 5.8 15.8 287.2 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000039913 Pak5 ENSMUST00000077200 ENSMUSP00000076440 TRANSLATION protein_coding - CCDS16790.1 1 719.0 19.0 5.8 15.8 287.2 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000027355 Tmco5 ENSMUST00000146144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027355 Tmco5 ENSMUST00000123598 ENSMUSP00000115690 TRANSLATION protein_coding stop - 5 250.0 0.0 0.0 0.0 244.9 2.0 -4,-5 0.0018 - -2.0 MINOR ENSMUSG00000027355 Tmco5 ENSMUST00000155470 ENSMUSP00000122739 TRANSLATION protein_coding stop - 1 226.0 0.0 0.0 0.0 149.5 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000027355 Tmco5 ENSMUST00000028834 ENSMUSP00000028834 TRANSLATION protein_coding - CCDS16569.1 1 303.0 0.0 0.0 5.6 367.9 2.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000042670 Immp1l ENSMUST00000037499 ENSMUSP00000049044 TRANSLATION protein_coding - CCDS38192.1 1 166.0 0.0 4.6 27.2 0.0 0.0 -4,-7 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000037773 Pced1a ENSMUST00000142536 - NO_TRANSLATION retained_intron ENSMUSG00000037773 Pced1a ENSMUST00000153663 - NO_TRANSLATION retained_intron ENSMUSG00000037773 Pced1a ENSMUST00000141749 - NO_TRANSLATION retained_intron ENSMUSG00000037773 Pced1a ENSMUST00000123977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037773 Pced1a ENSMUST00000131561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037773 Pced1a ENSMUST00000089581 ENSMUSP00000087009 TRANSLATION protein_coding - CCDS50711.1 1 449.0 0.0 4.75 8.2 31.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037773 Pced1a ENSMUST00000110277 ENSMUSP00000105906 TRANSLATION protein_coding - CCDS50711.1 1 449.0 0.0 4.75 8.2 31.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027350 Chgb ENSMUST00000028826 ENSMUSP00000028826 TRANSLATION protein_coding - CCDS16777.1 1 677.0 0.0 0.0 0.0 780.8 0.0 4,-1 1.0 16 6.0 PRINCIPAL:1 ENSMUSG00000048226 Or4c107 ENSMUST00000055895 ENSMUSP00000052837 TRANSLATION protein_coding - CCDS16357.1 - 311.0 0.0 1.0 8.2 157.2 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048226 Or4c107 ENSMUST00000215781 ENSMUSP00000149781 TRANSLATION protein_coding - CCDS16357.1 5 311.0 0.0 1.0 8.2 157.2 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063019 Manbal ENSMUST00000081202 ENSMUSP00000079965 TRANSLATION protein_coding - CCDS38304.1 1 85.0 0.0 1.0 0.0 110.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060227 Golm2 ENSMUST00000089912 ENSMUSP00000087357 TRANSLATION protein_coding - CCDS16650.1 1 402.0 0.0 3.5 0.0 0.0 1.0 0,-4 0.2489 9 6.0 MINOR ENSMUSG00000060227 Golm2 ENSMUST00000110586 ENSMUSP00000106216 TRANSLATION protein_coding - CCDS57184.1 1 379.0 0.0 3.5 14.4 0.0 1.0 0,-4 0.9213 10 9.62 ALTERNATIVE:1 ENSMUSG00000060227 Golm2 ENSMUST00000127475 - NO_TRANSLATION retained_intron ENSMUSG00000060227 Golm2 ENSMUST00000078752 ENSMUSP00000077811 TRANSLATION protein_coding - CCDS57183.1 1 435.0 0.0 3.5 15.8 0.0 1.0 0,-4 1.0 10 10.0 PRINCIPAL:4 ENSMUSG00000060227 Golm2 ENSMUST00000135416 - NO_TRANSLATION retained_intron ENSMUSG00000060227 Golm2 ENSMUST00000136023 ENSMUSP00000117883 TRANSLATION protein_coding start - 3 267.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0063 7 -2.0 MINOR ENSMUSG00000060227 Golm2 ENSMUST00000089915 ENSMUSP00000087360 TRANSLATION protein_coding - CCDS50686.1 2 346.0 0.0 3.5 0.0 0.0 1.0 0,-4 0.2332 9 6.0 MINOR ENSMUSG00000060227 Golm2 ENSMUST00000126256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036958 Cst11 ENSMUST00000028934 ENSMUSP00000028934 TRANSLATION protein_coding - CCDS16845.1 1 139.0 0.0 2.75 5.3 51.5 0.0 2,-3 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000090059 Or8j3c ENSMUST00000216166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090059 Or8j3c ENSMUST00000105213 ENSMUSP00000100848 TRANSLATION protein_coding - CCDS38171.1 - 315.0 0.0 1.0 10.3 157.2 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000090059 Or8j3c ENSMUST00000217481 ENSMUSP00000149742 TRANSLATION protein_coding - CCDS38171.1 5 315.0 0.0 1.0 10.3 157.2 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000010505 Myt1 ENSMUST00000183403 ENSMUSP00000139356 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010505 Myt1 ENSMUST00000156190 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010505 Myt1 ENSMUST00000142245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010505 Myt1 ENSMUST00000129856 ENSMUSP00000122011 TRANSLATION protein_coding start/stop - 5 604.0 17.0 3.65 0.0 520.8 0.0 -4,-6 0.0087 1 -2.0 MINOR ENSMUSG00000010505 Myt1 ENSMUST00000223883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010505 Myt1 ENSMUST00000108756 ENSMUSP00000104387 TRANSLATION protein_coding - CCDS17223.1 1 1127.0 27.0 10.0 3.4 646.2 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:2 ENSMUSG00000010505 Myt1 ENSMUST00000108757 ENSMUSP00000104388 TRANSLATION protein_coding - CCDS50857.1 1 1089.0 27.0 9.8 0.0 625.9 0.0 -4,-5 0.2429 3 13.198 MINOR ENSMUSG00000010505 Myt1 ENSMUST00000130079 - NO_TRANSLATION retained_intron ENSMUSG00000010505 Myt1 ENSMUST00000135744 ENSMUSP00000121394 TRANSLATION protein_coding stop - 3 121.0 9.0 3.1 0.0 116.7 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000010505 Myt1 ENSMUST00000129843 ENSMUSP00000115697 TRANSLATION protein_coding start - 1 787.0 20.0 8.75 0.0 533.8 0.0 -4,-5 0.017 2 -2.0 MINOR ENSMUSG00000010505 Myt1 ENSMUST00000081125 ENSMUSP00000079900 TRANSLATION protein_coding - CCDS50856.1 1 1169.0 27.0 10.0 0.7 646.2 0.0 -4,-5 0.4364 3 14.0 ALTERNATIVE:2 ENSMUSG00000010505 Myt1 ENSMUST00000148766 - NO_TRANSLATION retained_intron ENSMUSG00000017969 Ptgis ENSMUST00000136271 - NO_TRANSLATION retained_intron ENSMUSG00000017969 Ptgis ENSMUST00000018113 ENSMUSP00000018113 TRANSLATION protein_coding - CCDS17097.1 1 501.0 25.0 8.95 3.2 141.1 0.0 4,-1 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000017969 Ptgis ENSMUST00000088041 ENSMUSP00000085357 TRANSLATION protein_coding - - 1 509.0 25.0 8.11 0.0 123.9 0.0 4,-1 0.0444 17 15.288 MINOR ENSMUSG00000027300 Ubox5 ENSMUST00000140581 ENSMUSP00000114878 TRANSLATION nonsense_mediated_decay - - 1 553.0 0.0 0.0 0.0 96.7 0.0 -4,-6 0.0258 - -2.0 MINOR ENSMUSG00000027300 Ubox5 ENSMUST00000028761 ENSMUSP00000028761 TRANSLATION protein_coding - CCDS16747.1 1 539.0 8.0 0.0 9.0 120.2 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026787 Gad2 ENSMUST00000028123 ENSMUSP00000028123 TRANSLATION protein_coding - CCDS15724.1 1 585.0 17.0 11.95 16.7 451.6 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000026787 Gad2 ENSMUST00000156728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027394 Ttl ENSMUST00000035812 ENSMUSP00000046883 TRANSLATION protein_coding - CCDS16719.1 1 377.0 20.0 6.25 21.1 236.6 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000027394 Ttl ENSMUST00000144730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027394 Ttl ENSMUST00000144120 ENSMUSP00000117506 TRANSLATION protein_coding start - 1 199.0 19.0 3.5 0.0 207.9 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000046814 Gchfr ENSMUST00000057454 ENSMUSP00000060835 TRANSLATION protein_coding - CCDS38204.1 1 84.0 0.0 2.5 27.7 147.6 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000041921 Metap1d ENSMUST00000124875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041921 Metap1d ENSMUST00000138873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041921 Metap1d ENSMUST00000139045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041921 Metap1d ENSMUST00000123858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041921 Metap1d ENSMUST00000037210 ENSMUSP00000048190 TRANSLATION protein_coding - CCDS16115.1 1 335.0 16.0 7.1 15.5 184.3 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000041921 Metap1d ENSMUST00000148164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068950 Or1j10 ENSMUST00000217511 ENSMUSP00000149146 TRANSLATION protein_coding - CCDS15971.1 5 306.0 0.0 1.0 5.2 189.0 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000068950 Or1j10 ENSMUST00000072114 ENSMUSP00000071985 TRANSLATION protein_coding - CCDS15971.1 3 306.0 0.0 1.0 5.2 189.0 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000068950 Or1j10 ENSMUST00000091006 ENSMUSP00000088528 TRANSLATION protein_coding - CCDS15971.1 - 306.0 0.0 1.0 5.2 189.0 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027395 Polr1b ENSMUST00000103205 ENSMUSP00000099494 TRANSLATION protein_coding - CCDS16720.1 1 1135.0 9.0 10.76 22.1 794.9 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000027395 Polr1b ENSMUST00000133345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027395 Polr1b ENSMUST00000144004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027395 Polr1b ENSMUST00000028874 ENSMUSP00000028874 TRANSLATION protein_coding - - 1 754.0 2.0 8.32 0.0 328.9 0.0 -4,-5 0.0036 11 2.454 MINOR ENSMUSG00000027395 Polr1b ENSMUST00000147727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018326 Ywhab ENSMUST00000131288 ENSMUSP00000117125 TRANSLATION protein_coding stop - 3 159.0 0.0 2.5 0.0 213.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000018326 Ywhab ENSMUST00000018470 ENSMUSP00000018470 TRANSLATION protein_coding - CCDS17019.1 1 246.0 0.0 5.0 36.9 362.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000075092 Or4c124 ENSMUST00000213860 ENSMUSP00000150860 TRANSLATION protein_coding - CCDS16375.1 3 311.0 0.0 1.0 9.4 167.1 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075092 Or4c124 ENSMUST00000215679 ENSMUSP00000150307 TRANSLATION protein_coding - CCDS16375.1 5 311.0 0.0 1.0 9.4 167.1 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075092 Or4c124 ENSMUST00000099785 ENSMUSP00000097373 TRANSLATION protein_coding - CCDS16375.1 - 311.0 0.0 1.0 9.4 167.1 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034552 Zswim2 ENSMUST00000038223 ENSMUSP00000044913 TRANSLATION protein_coding - CCDS16183.1 1 631.0 23.0 2.45 6.0 69.7 0.0 -4,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000034552 Zswim2 ENSMUST00000155127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034552 Zswim2 ENSMUST00000152829 ENSMUSP00000119439 TRANSLATION protein_coding stop - 1 392.0 19.0 2.45 0.0 31.0 0.0 -4,-2 0.0256 - -2.0 MINOR ENSMUSG00000038765 Lmx1b ENSMUST00000137559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038765 Lmx1b ENSMUST00000239476 ENSMUSP00000159290 TRANSLATION protein_coding - CCDS15944.1 - 372.0 16.0 3.14 6.8 182.6 0.0 -4,-5 0.7927 - 19.612 MINOR ENSMUSG00000038765 Lmx1b ENSMUST00000176067 ENSMUSP00000134944 TRANSLATION protein_coding start - 5 369.0 16.0 3.14 0.0 182.6 0.0 -1,-3 0.0779 - -2.0 MINOR ENSMUSG00000038765 Lmx1b ENSMUST00000041730 ENSMUSP00000043616 TRANSLATION protein_coding - - 1 401.0 16.0 3.14 15.4 182.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000061186 Sfmbt2 ENSMUST00000114862 ENSMUSP00000110512 TRANSLATION protein_coding - CCDS57153.1 1 183.0 0.0 2.132 0.0 80.6 0.0 -4,-6 0.0086 - 0.0 MINOR ENSMUSG00000061186 Sfmbt2 ENSMUST00000116594 ENSMUSP00000112293 TRANSLATION protein_coding - CCDS38046.1 1 942.0 0.0 9.747 0.0 439.4 0.0 -4,-6 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000061186 Sfmbt2 ENSMUST00000114864 ENSMUSP00000110514 TRANSLATION protein_coding - CCDS57153.1 1 183.0 0.0 2.132 0.0 80.6 0.0 -4,-6 0.0086 - 0.0 MINOR ENSMUSG00000061186 Sfmbt2 ENSMUST00000041105 ENSMUSP00000040575 TRANSLATION protein_coding - CCDS57152.1 5 975.0 0.0 9.747 0.0 439.4 0.0 -4,-6 0.4299 1 8.0 ALTERNATIVE:2 ENSMUSG00000061186 Sfmbt2 ENSMUST00000114861 ENSMUSP00000110511 TRANSLATION protein_coding - CCDS57153.1 5 183.0 0.0 2.132 0.0 80.6 0.0 -4,-6 0.0086 - 0.0 MINOR ENSMUSG00000061186 Sfmbt2 ENSMUST00000126531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061186 Sfmbt2 ENSMUST00000145398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075249 Fsip2 ENSMUST00000143764 ENSMUSP00000120314 TRANSLATION protein_coding - - 5 6995.0 0.0 2.6 0.0 1652.5 0.0 -4,-5 1.0 27 12.0 PRINCIPAL:1 ENSMUSG00000075249 Fsip2 ENSMUST00000132967 ENSMUSP00000122350 TRANSLATION nonsense_mediated_decay start - 5 1009.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0161 - -2.0 MINOR ENSMUSG00000075249 Fsip2 ENSMUST00000136202 ENSMUSP00000114196 TRANSLATION nonsense_mediated_decay start - 5 135.0 0.0 2.6 0.0 0.0 0.0 -4,-5 0.0527 1 -2.0 MINOR ENSMUSG00000026655 Fam107b ENSMUST00000027965 ENSMUSP00000027965 TRANSLATION protein_coding - CCDS15655.1 1 131.0 0.0 3.46 18.0 142.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000026655 Fam107b ENSMUST00000226435 ENSMUSP00000154419 TRANSLATION protein_coding - - - 307.0 0.0 3.46 4.2 142.3 0.0 -4,0 0.3228 7 12.752 MINOR ENSMUSG00000026655 Fam107b ENSMUST00000115054 ENSMUSP00000110706 TRANSLATION protein_coding - CCDS15655.1 3 131.0 0.0 3.46 18.0 142.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000026655 Fam107b ENSMUST00000115053 ENSMUSP00000110705 TRANSLATION protein_coding - CCDS15655.1 3 131.0 0.0 3.46 18.0 142.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000026655 Fam107b ENSMUST00000177037 ENSMUSP00000135325 TRANSLATION protein_coding stop - 3 68.0 0.0 0.8 0.0 44.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026655 Fam107b ENSMUST00000115052 ENSMUSP00000110704 TRANSLATION protein_coding - - 3 153.0 0.0 3.46 2.3 142.3 0.0 -4,-5 0.1545 7 12.304 MINOR ENSMUSG00000026655 Fam107b ENSMUST00000115055 ENSMUSP00000110707 TRANSLATION protein_coding - CCDS15655.1 2 131.0 0.0 3.46 18.0 142.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000026655 Fam107b ENSMUST00000177125 ENSMUSP00000135757 TRANSLATION nonsense_mediated_decay - - 2 48.0 0.0 0.8 0.0 53.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026655 Fam107b ENSMUST00000176254 ENSMUSP00000135846 TRANSLATION protein_coding - - 5 75.0 0.0 2.0 0.0 58.7 0.0 -4,-5 0.0 6 4.062 MINOR ENSMUSG00000027298 Tyro3 ENSMUST00000137135 - NO_TRANSLATION retained_intron ENSMUSG00000027298 Tyro3 ENSMUST00000028763 ENSMUSP00000028763 TRANSLATION protein_coding - CCDS16611.1 1 880.0 18.0 10.9 0.4 379.3 1.0 3,-3 1.0 9 14.0 PRINCIPAL:2 ENSMUSG00000027298 Tyro3 ENSMUST00000110783 ENSMUSP00000106410 TRANSLATION protein_coding - CCDS71119.1 1 876.0 18.0 10.9 0.0 379.3 1.0 -4,-5 0.4817 9 14.0 ALTERNATIVE:2 ENSMUSG00000027298 Tyro3 ENSMUST00000148343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027298 Tyro3 ENSMUST00000147761 - NO_TRANSLATION retained_intron ENSMUSG00000027298 Tyro3 ENSMUST00000147636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027298 Tyro3 ENSMUST00000135726 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027298 Tyro3 ENSMUST00000130456 - NO_TRANSLATION retained_intron ENSMUSG00000040434 Large2 ENSMUST00000176646 - NO_TRANSLATION retained_intron ENSMUSG00000040434 Large2 ENSMUST00000090582 ENSMUSP00000088070 TRANSLATION protein_coding - CCDS50646.1 1 655.0 5.0 11.36 1.0 192.1 0.0 1,-4 0.1269 3 9.002 MINOR ENSMUSG00000040434 Large2 ENSMUST00000175740 - NO_TRANSLATION retained_intron ENSMUSG00000040434 Large2 ENSMUST00000175851 - NO_TRANSLATION retained_intron ENSMUSG00000040434 Large2 ENSMUST00000130283 - NO_TRANSLATION retained_intron ENSMUSG00000040434 Large2 ENSMUST00000177273 - NO_TRANSLATION retained_intron ENSMUSG00000040434 Large2 ENSMUST00000176774 ENSMUSP00000135400 TRANSLATION protein_coding - CCDS71104.1 5 691.0 5.0 12.32 3.4 256.6 0.0 1,-4 0.9821 3 11.811 ALTERNATIVE:2 ENSMUSG00000040434 Large2 ENSMUST00000148352 ENSMUSP00000135451 TRANSLATION nonsense_mediated_decay - - 2 92.0 0.0 0.2 0.0 0.0 0.0 1,-4 0.0019 - -2.0 MINOR ENSMUSG00000040434 Large2 ENSMUST00000068586 ENSMUSP00000064128 TRANSLATION protein_coding - CCDS16443.2 1 690.0 5.0 12.36 3.4 256.6 0.0 1,-4 0.9714 3 11.889 ALTERNATIVE:2 ENSMUSG00000040434 Large2 ENSMUST00000176339 ENSMUSP00000135619 TRANSLATION protein_coding stop - 5 133.0 0.0 1.57 0.0 0.0 0.0 -4,0 0.0005 - -2.0 MINOR ENSMUSG00000040434 Large2 ENSMUST00000176402 - NO_TRANSLATION retained_intron ENSMUSG00000040434 Large2 ENSMUST00000124428 - NO_TRANSLATION retained_intron ENSMUSG00000040434 Large2 ENSMUST00000111284 ENSMUSP00000106915 TRANSLATION protein_coding - - 5 715.0 5.0 12.36 3.7 256.6 0.0 1,-4 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000040434 Large2 ENSMUST00000146311 - NO_TRANSLATION retained_intron ENSMUSG00000040434 Large2 ENSMUST00000176820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040434 Large2 ENSMUST00000176810 ENSMUSP00000135024 TRANSLATION protein_coding - - 5 715.0 5.0 12.36 3.7 256.6 0.0 1,-4 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000040434 Large2 ENSMUST00000176289 ENSMUSP00000135118 TRANSLATION nonsense_mediated_decay - - 1 76.0 0.0 0.2 0.0 0.0 0.0 1,-4 0.0019 - -2.0 MINOR ENSMUSG00000078923 Ube2v1 ENSMUST00000144628 - NO_TRANSLATION retained_intron ENSMUSG00000078923 Ube2v1 ENSMUST00000151365 ENSMUSP00000114764 TRANSLATION protein_coding - CCDS79868.1 2 173.0 0.0 3.0 0.0 62.2 0.0 -4,-6 0.0571 3 11.604 MINOR ENSMUSG00000078923 Ube2v1 ENSMUST00000109207 ENSMUSP00000104830 TRANSLATION protein_coding - CCDS17103.1 1 147.0 0.0 3.198 31.2 62.2 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000078923 Ube2v1 ENSMUST00000060645 ENSMUSP00000053109 TRANSLATION protein_coding - CCDS79869.1 1 105.0 0.0 2.198 5.0 0.0 0.0 -4,-6 0.1164 2 4.53 MINOR ENSMUSG00000078923 Ube2v1 ENSMUST00000130284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078923 Ube2v1 ENSMUST00000140216 ENSMUSP00000116578 TRANSLATION protein_coding stop - 3 124.0 0.0 2.0 0.0 47.9 0.0 -4,-6 0.0003 - -2.0 MINOR ENSMUSG00000078923 Ube2v1 ENSMUST00000144830 - NO_TRANSLATION retained_intron ENSMUSG00000034075 Zdhhc5 ENSMUST00000138171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034075 Zdhhc5 ENSMUST00000035840 ENSMUSP00000048198 TRANSLATION protein_coding - CCDS16190.1 1 715.0 3.0 3.58 12.5 122.6 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000034075 Zdhhc5 ENSMUST00000125690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039041 Adrm1 ENSMUST00000155357 - NO_TRANSLATION retained_intron ENSMUSG00000039041 Adrm1 ENSMUST00000152540 - NO_TRANSLATION retained_intron ENSMUSG00000039041 Adrm1 ENSMUST00000128029 - NO_TRANSLATION retained_intron ENSMUSG00000039041 Adrm1 ENSMUST00000147383 - NO_TRANSLATION retained_intron ENSMUSG00000039041 Adrm1 ENSMUST00000147341 - NO_TRANSLATION retained_intron ENSMUSG00000039041 Adrm1 ENSMUST00000061437 ENSMUSP00000050076 TRANSLATION protein_coding - CCDS17171.1 1 407.0 0.0 8.5 21.8 229.2 0.0 -3,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039041 Adrm1 ENSMUST00000145230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039041 Adrm1 ENSMUST00000152850 - NO_TRANSLATION retained_intron ENSMUSG00000053141 Ptprt ENSMUST00000109443 ENSMUSP00000105069 TRANSLATION protein_coding - CCDS71183.1 1 1445.0 25.0 21.15 2.4 662.4 3.0 1,-3 1.0 21 15.0 PRINCIPAL:2 ENSMUSG00000053141 Ptprt ENSMUST00000109442 ENSMUSP00000105068 TRANSLATION protein_coding - - 5 1454.0 25.0 21.15 0.4 662.4 3.0 1,-3 0.5219 20 14.0 ALTERNATIVE:2 ENSMUSG00000053141 Ptprt ENSMUST00000153770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053141 Ptprt ENSMUST00000109441 ENSMUSP00000105067 TRANSLATION protein_coding - CCDS71182.1 1 1455.0 24.0 20.4 0.4 647.7 3.0 1,-3 0.4079 20 11.234 MINOR ENSMUSG00000053141 Ptprt ENSMUST00000109445 ENSMUSP00000105071 TRANSLATION protein_coding - CCDS17001.1 1 1435.0 25.0 21.15 0.4 662.4 3.0 1,-3 0.6482 20 14.0 ALTERNATIVE:2 ENSMUSG00000053141 Ptprt ENSMUST00000129015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033705 Stard9 ENSMUST00000154193 ENSMUSP00000116900 TRANSLATION nonsense_mediated_decay start - 2 785.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0137 - -2.0 MINOR ENSMUSG00000033705 Stard9 ENSMUST00000140843 ENSMUSP00000117178 TRANSLATION nonsense_mediated_decay - - 5 450.0 11.0 9.115 0.0 338.3 0.0 -4,-7 0.0301 - -2.0 MINOR ENSMUSG00000033705 Stard9 ENSMUST00000180041 ENSMUSP00000136055 TRANSLATION protein_coding - - 5 4561.0 11.0 11.44 0.0 362.5 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033705 Stard9 ENSMUST00000141917 - NO_TRANSLATION retained_intron ENSMUSG00000033705 Stard9 ENSMUST00000070420 ENSMUSP00000070111 TRANSLATION nonsense_mediated_decay start - 1 785.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0137 - -2.0 MINOR ENSMUSG00000033705 Stard9 ENSMUST00000229722 - NO_TRANSLATION retained_intron ENSMUSG00000033705 Stard9 ENSMUST00000129384 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027484 Bpifa5 ENSMUST00000028986 ENSMUSP00000028986 TRANSLATION protein_coding - CCDS16926.1 1 270.0 0.0 4.8 0.4 121.5 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000078201 Tmem203 ENSMUST00000104998 ENSMUSP00000100614 TRANSLATION protein_coding - CCDS38070.1 - 136.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.9522 - 0.0 PRINCIPAL:1 ENSMUSG00000038085 Cnbd2 ENSMUST00000125395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038085 Cnbd2 ENSMUST00000109580 ENSMUSP00000105208 TRANSLATION protein_coding - - 1 544.0 14.0 2.67 0.0 54.5 0.0 -4,-2 0.0502 - 13.394 ALTERNATIVE:2 ENSMUSG00000038085 Cnbd2 ENSMUST00000133056 - NO_TRANSLATION retained_intron ENSMUSG00000038085 Cnbd2 ENSMUST00000073942 ENSMUSP00000073598 TRANSLATION protein_coding - - 1 425.0 14.0 2.97 0.0 54.5 0.0 -4,-2 0.7789 - 14.0 PRINCIPAL:2 ENSMUSG00000038085 Cnbd2 ENSMUST00000154227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038085 Cnbd2 ENSMUST00000037096 ENSMUSP00000041268 TRANSLATION protein_coding - CCDS50778.1 1 673.0 14.0 2.97 0.0 54.5 0.0 -4,-5 0.2489 1 14.0 ALTERNATIVE:2 ENSMUSG00000005802 Slc30a4 ENSMUST00000099457 ENSMUSP00000097056 TRANSLATION protein_coding - CCDS71131.1 1 381.0 0.0 1.65 0.0 92.9 5.0 -4,-6 0.0606 - 4.452 MINOR ENSMUSG00000005802 Slc30a4 ENSMUST00000005952 ENSMUSP00000005952 TRANSLATION protein_coding - CCDS16667.1 1 430.0 0.0 2.65 10.1 181.0 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027463 Slc52a3 ENSMUST00000109861 ENSMUSP00000105487 TRANSLATION protein_coding - CCDS16876.1 1 460.0 0.0 0.0 1.1 134.7 11.0 0,-3 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000027463 Slc52a3 ENSMUST00000109859 ENSMUSP00000105485 TRANSLATION protein_coding - CCDS50749.1 5 250.0 0.0 0.0 0.0 0.0 5.0 0,-3 0.0723 - 0.0 MINOR ENSMUSG00000027463 Slc52a3 ENSMUST00000073228 ENSMUSP00000072961 TRANSLATION protein_coding - CCDS16876.1 1 460.0 0.0 0.0 1.1 134.7 11.0 0,-3 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000027463 Slc52a3 ENSMUST00000109858 ENSMUSP00000105484 TRANSLATION protein_coding - CCDS50749.1 1 250.0 0.0 0.0 0.0 0.0 5.0 0,-3 0.0723 - 0.0 MINOR ENSMUSG00000037197 Rbm17 ENSMUST00000125808 - NO_TRANSLATION retained_intron ENSMUSG00000037197 Rbm17 ENSMUST00000150369 - NO_TRANSLATION retained_intron ENSMUSG00000037197 Rbm17 ENSMUST00000195047 - NO_TRANSLATION retained_intron ENSMUSG00000037197 Rbm17 ENSMUST00000040314 ENSMUSP00000041831 TRANSLATION protein_coding - CCDS15684.1 1 405.0 0.0 3.35 24.5 69.9 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000037197 Rbm17 ENSMUST00000131036 - NO_TRANSLATION retained_intron ENSMUSG00000037197 Rbm17 ENSMUST00000156469 ENSMUSP00000117133 TRANSLATION protein_coding stop - 3 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027419 Pcsk2 ENSMUST00000124751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027419 Pcsk2 ENSMUST00000028905 ENSMUSP00000028905 TRANSLATION protein_coding - CCDS16810.1 1 637.0 5.0 7.7 16.4 297.5 0.0 -1,-3 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000026960 Arl6ip6 ENSMUST00000028336 ENSMUSP00000028336 TRANSLATION protein_coding - CCDS16039.1 1 226.0 0.0 0.0 9.6 98.9 0.0 -4,-1 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000026960 Arl6ip6 ENSMUST00000155517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044628 Rnf208 ENSMUST00000060818 ENSMUSP00000057742 TRANSLATION protein_coding - CCDS15757.2 1 265.0 8.0 0.6 6.0 0.0 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000044628 Rnf208 ENSMUST00000114355 ENSMUSP00000109995 TRANSLATION protein_coding - CCDS15757.2 - 265.0 8.0 0.6 6.0 0.0 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000095824 Cwc22rt7 ENSMUST00000179552 ENSMUSP00000135969 TRANSLATION protein_coding start - 5 243.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0008 - -2.0 MINOR ENSMUSG00000095824 Cwc22rt7 ENSMUST00000099948 ENSMUSP00000097531 TRANSLATION protein_coding - - - 830.0 0.0 3.43 0.0 130.3 0.0 -4,-2 0.8382 - 12.0 PRINCIPAL:1 ENSMUSG00000027431 Scp2d1 ENSMUST00000028918 ENSMUSP00000028918 TRANSLATION protein_coding - CCDS38255.1 - 156.0 0.0 1.0 9.8 64.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000002718 Cse1l ENSMUST00000169290 ENSMUSP00000128376 TRANSLATION nonsense_mediated_decay - - 1 415.0 0.0 6.96 0.0 371.4 0.0 -4,-5 0.0 19 -2.0 MINOR ENSMUSG00000002718 Cse1l ENSMUST00000002790 ENSMUSP00000002790 TRANSLATION protein_coding - CCDS17092.1 1 971.0 0.0 14.248 35.5 1187.2 0.0 -4,-5 1.0 35 16.0 PRINCIPAL:1 ENSMUSG00000002718 Cse1l ENSMUST00000166871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002718 Cse1l ENSMUST00000135139 - NO_TRANSLATION retained_intron ENSMUSG00000002718 Cse1l ENSMUST00000163917 - NO_TRANSLATION retained_intron ENSMUSG00000002718 Cse1l ENSMUST00000145819 - NO_TRANSLATION retained_intron ENSMUSG00000002718 Cse1l ENSMUST00000168599 ENSMUSP00000129983 TRANSLATION protein_coding - - 5 915.0 0.0 13.438 2.0 1080.7 0.0 -4,-5 0.1365 32 4.496 MINOR ENSMUSG00000002718 Cse1l ENSMUST00000129061 - NO_TRANSLATION retained_intron ENSMUSG00000002718 Cse1l ENSMUST00000164974 ENSMUSP00000128515 TRANSLATION nonsense_mediated_decay start - 3 74.0 0.0 0.994 0.0 46.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000002718 Cse1l ENSMUST00000171410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002718 Cse1l ENSMUST00000132402 - NO_TRANSLATION retained_intron ENSMUSG00000002718 Cse1l ENSMUST00000163437 ENSMUSP00000126757 TRANSLATION protein_coding start - 5 658.0 0.0 8.608 0.0 577.1 0.0 -1,-6 0.0059 21 -2.0 MINOR ENSMUSG00000059361 Nrsn2 ENSMUST00000079278 ENSMUSP00000078260 TRANSLATION protein_coding - CCDS16882.1 1 202.0 0.0 0.2 9.2 116.1 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000001819 Hoxd13 ENSMUST00000001872 ENSMUSP00000001872 TRANSLATION protein_coding - CCDS16139.1 1 339.0 0.0 1.0 6.2 120.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000078894 2210418O10Rik ENSMUST00000099009 ENSMUSP00000096607 TRANSLATION protein_coding - CCDS84594.1 1 134.0 7.0 3.25 0.0 110.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078894 2210418O10Rik ENSMUST00000166464 ENSMUSP00000126545 TRANSLATION protein_coding start - - 249.0 2.0 1.2 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000078894 2210418O10Rik ENSMUST00000136719 ENSMUSP00000118168 TRANSLATION protein_coding - CCDS84595.1 1 102.0 7.0 2.25 0.0 30.1 0.0 -4,-5 0.0032 - 11.196 MINOR ENSMUSG00000078894 2210418O10Rik ENSMUST00000135430 ENSMUSP00000116894 TRANSLATION protein_coding - - 5 64.0 0.0 2.25 0.4 80.1 0.0 -4,-5 0.0017 - 8.196 MINOR ENSMUSG00000075171 Or5t15 ENSMUST00000099874 ENSMUSP00000097459 TRANSLATION protein_coding - CCDS16270.1 - 308.0 0.0 1.0 6.9 158.7 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026983 Il36rn ENSMUST00000114490 ENSMUSP00000110134 TRANSLATION protein_coding - CCDS50519.1 1 156.0 0.0 3.41 10.7 77.7 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026983 Il36rn ENSMUST00000147885 ENSMUSP00000141512 TRANSLATION protein_coding - - 1 82.0 0.0 2.41 0.0 0.0 0.0 -4,-7 0.0 1 4.002 MINOR ENSMUSG00000026983 Il36rn ENSMUST00000028360 ENSMUSP00000028360 TRANSLATION protein_coding - CCDS50519.1 1 156.0 0.0 3.41 10.7 77.7 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000026983 Il36rn ENSMUST00000195464 - NO_TRANSLATION retained_intron ENSMUSG00000026983 Il36rn ENSMUST00000123577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026983 Il36rn ENSMUST00000123053 ENSMUSP00000116122 TRANSLATION protein_coding stop - 2 72.0 0.0 2.08 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000026983 Il36rn ENSMUST00000168941 ENSMUSP00000126028 TRANSLATION protein_coding - CCDS50519.1 5 156.0 0.0 3.41 10.7 77.7 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000003283 Hck ENSMUST00000189688 ENSMUSP00000141030 TRANSLATION protein_coding - CCDS50756.1 1 503.0 17.0 9.75 23.0 457.5 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000003283 Hck ENSMUST00000003370 ENSMUSP00000003370 TRANSLATION protein_coding start CCDS38284.1 1 524.0 17.0 9.75 2.2 457.5 0.0 -4,-6 0.3078 11 -2.0 MINOR ENSMUSG00000003283 Hck ENSMUST00000109799 ENSMUSP00000105423 TRANSLATION protein_coding - CCDS50756.1 1 503.0 17.0 9.75 23.0 457.5 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000027168 Pax6 ENSMUST00000172990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027168 Pax6 ENSMUST00000153011 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027168 Pax6 ENSMUST00000111082 ENSMUSP00000106711 TRANSLATION protein_coding - CCDS57181.1 1 422.0 0.0 5.13 18.3 319.6 0.0 -4,-7 1.0 1 15.048 PRINCIPAL:1 ENSMUSG00000027168 Pax6 ENSMUST00000153639 - NO_TRANSLATION retained_intron ENSMUSG00000027168 Pax6 ENSMUST00000111087 ENSMUSP00000106716 TRANSLATION protein_coding - CCDS57181.1 1 422.0 0.0 5.13 18.3 319.6 0.0 -4,-7 1.0 1 15.048 PRINCIPAL:1 ENSMUSG00000027168 Pax6 ENSMUST00000090397 ENSMUSP00000087878 TRANSLATION protein_coding - CCDS57181.1 5 422.0 0.0 5.13 18.3 319.6 0.0 -4,-7 1.0 1 15.048 PRINCIPAL:1 ENSMUSG00000027168 Pax6 ENSMUST00000111086 ENSMUSP00000106715 TRANSLATION protein_coding - CCDS16499.1 1 436.0 0.0 4.63 23.7 299.1 0.0 -4,-7 0.9309 2 13.768 MINOR ENSMUSG00000027168 Pax6 ENSMUST00000155081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027168 Pax6 ENSMUST00000111088 ENSMUSP00000106717 TRANSLATION protein_coding - - 1 254.0 0.0 2.15 0.0 80.8 0.0 -4,-5 0.0 - 0.042 MINOR ENSMUSG00000027168 Pax6 ENSMUST00000138365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027168 Pax6 ENSMUST00000147923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027168 Pax6 ENSMUST00000156216 ENSMUSP00000119375 TRANSLATION protein_coding stop - 5 139.0 0.0 2.08 0.0 216.8 0.0 -4,-7 0.0004 2 -2.0 MINOR ENSMUSG00000027168 Pax6 ENSMUST00000123063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027168 Pax6 ENSMUST00000090391 ENSMUSP00000087870 TRANSLATION protein_coding - CCDS16499.1 1 436.0 0.0 4.63 23.7 299.1 0.0 -4,-7 0.9309 2 13.768 MINOR ENSMUSG00000027168 Pax6 ENSMUST00000154302 - NO_TRANSLATION retained_intron ENSMUSG00000027168 Pax6 ENSMUST00000140173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027168 Pax6 ENSMUST00000146803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027168 Pax6 ENSMUST00000111083 ENSMUSP00000106712 TRANSLATION protein_coding - CCDS57181.1 5 422.0 0.0 5.13 18.3 319.6 0.0 -4,-7 1.0 1 15.048 PRINCIPAL:1 ENSMUSG00000027168 Pax6 ENSMUST00000147946 - NO_TRANSLATION retained_intron ENSMUSG00000027168 Pax6 ENSMUST00000167211 ENSMUSP00000129344 TRANSLATION protein_coding - CCDS16499.1 5 436.0 0.0 4.63 23.7 299.1 0.0 -4,-7 0.9309 2 13.768 MINOR ENSMUSG00000027168 Pax6 ENSMUST00000145744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027168 Pax6 ENSMUST00000142772 ENSMUSP00000139168 TRANSLATION protein_coding stop - 3 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027168 Pax6 ENSMUST00000154643 - NO_TRANSLATION retained_intron ENSMUSG00000027168 Pax6 ENSMUST00000111085 ENSMUSP00000106714 TRANSLATION protein_coding - CCDS16499.1 5 436.0 0.0 4.63 23.7 299.1 0.0 -4,-7 0.9309 2 13.768 MINOR ENSMUSG00000027168 Pax6 ENSMUST00000123000 - NO_TRANSLATION retained_intron ENSMUSG00000027168 Pax6 ENSMUST00000135412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049922 Slc35c1 ENSMUST00000125276 ENSMUSP00000119271 TRANSLATION protein_coding - CCDS16449.1 1 350.0 0.0 2.33 19.8 71.8 14.0 -4,-7 1.0 1 10.0 PRINCIPAL:4 ENSMUSG00000049922 Slc35c1 ENSMUST00000136718 ENSMUSP00000137748 TRANSLATION protein_coding stop - 2 158.0 0.0 1.0 0.0 36.8 7.0 -4,-7 0.0037 1 -2.0 MINOR ENSMUSG00000049922 Slc35c1 ENSMUST00000067631 ENSMUSP00000063461 TRANSLATION protein_coding - CCDS16448.1 1 363.0 0.0 2.33 17.8 71.8 14.0 -4,-1 0.9471 1 9.576 ALTERNATIVE:1 ENSMUSG00000027200 Sema6d ENSMUST00000076335 ENSMUSP00000075674 TRANSLATION protein_coding - CCDS16671.1 1 998.0 0.0 11.925 12.2 469.6 2.0 4,-1 0.9272 13 10.67 ALTERNATIVE:1 ENSMUSG00000027200 Sema6d ENSMUST00000132088 - NO_TRANSLATION retained_intron ENSMUSG00000027200 Sema6d ENSMUST00000137172 - NO_TRANSLATION retained_intron ENSMUSG00000027200 Sema6d ENSMUST00000103239 ENSMUSP00000099529 TRANSLATION protein_coding - CCDS16673.1 5 1073.0 0.0 12.09 12.0 469.6 2.0 4,-1 1.0 13 10.946 PRINCIPAL:4 ENSMUSG00000027200 Sema6d ENSMUST00000103238 ENSMUSP00000099528 TRANSLATION protein_coding - CCDS16672.1 1 1054.0 0.0 12.09 6.2 469.6 2.0 4,-1 0.8009 13 9.392 MINOR ENSMUSG00000027200 Sema6d ENSMUST00000051419 ENSMUSP00000061123 TRANSLATION protein_coding - CCDS16670.1 1 1011.0 0.0 11.975 9.9 470.1 2.0 4,-1 0.9324 13 9.157 MINOR ENSMUSG00000027200 Sema6d ENSMUST00000078621 ENSMUSP00000077691 TRANSLATION protein_coding - CCDS38225.1 5 1030.0 0.0 11.975 5.9 470.1 2.0 4,-1 0.7749 13 8.086 MINOR ENSMUSG00000027200 Sema6d ENSMUST00000103241 ENSMUSP00000099531 TRANSLATION protein_coding - CCDS16671.1 5 998.0 0.0 11.925 12.2 469.6 2.0 4,-1 0.9272 13 10.67 ALTERNATIVE:1 ENSMUSG00000027200 Sema6d ENSMUST00000077847 ENSMUSP00000077014 TRANSLATION protein_coding - CCDS16672.1 5 1054.0 0.0 12.09 6.2 469.6 2.0 4,-1 0.8009 13 9.392 MINOR ENSMUSG00000027200 Sema6d ENSMUST00000103240 ENSMUSP00000099530 TRANSLATION protein_coding - CCDS71132.1 1 1069.0 0.0 12.09 8.0 469.6 2.0 4,-1 0.848 13 9.875 ALTERNATIVE:1 ENSMUSG00000027200 Sema6d ENSMUST00000151199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066798 Zbtb6 ENSMUST00000112932 ENSMUSP00000108554 TRANSLATION protein_coding - CCDS16000.1 2 423.0 16.0 0.4 9.2 117.7 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000066798 Zbtb6 ENSMUST00000053098 ENSMUSP00000056100 TRANSLATION protein_coding - CCDS16000.1 1 423.0 16.0 0.4 9.2 117.7 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000027547 Sall4 ENSMUST00000150588 ENSMUSP00000119628 TRANSLATION protein_coding start/stop - 2 131.0 8.0 0.68 0.0 54.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000027547 Sall4 ENSMUST00000130640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027547 Sall4 ENSMUST00000029061 ENSMUSP00000029061 TRANSLATION protein_coding - CCDS17115.1 1 1067.0 31.0 1.796 0.0 147.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000027547 Sall4 ENSMUST00000125138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027547 Sall4 ENSMUST00000137536 ENSMUSP00000115646 TRANSLATION protein_coding stop - 2 215.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000027547 Sall4 ENSMUST00000103074 ENSMUSP00000099363 TRANSLATION protein_coding - CCDS17116.1 1 623.0 11.0 1.066 0.0 48.1 0.0 -4,-5 0.0179 - 3.618 MINOR ENSMUSG00000027547 Sall4 ENSMUST00000075044 ENSMUSP00000074556 TRANSLATION protein_coding - CCDS17117.1 1 278.0 8.0 0.866 0.7 48.1 0.0 -4,-5 0.0162 - 2.946 MINOR ENSMUSG00000044249 Defb29 ENSMUST00000060598 ENSMUSP00000052589 TRANSLATION protein_coding - CCDS38276.1 1 78.0 0.0 0.6 0.1 28.7 0.0 1,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000096484 Cwc22rt4 ENSMUST00000180347 ENSMUSP00000137022 TRANSLATION protein_coding - - - 830.0 0.0 3.43 0.0 130.3 0.0 -4,-2 0.8382 - 12.0 PRINCIPAL:1 ENSMUSG00000096484 Cwc22rt4 ENSMUST00000179311 ENSMUSP00000136244 TRANSLATION protein_coding start - 5 243.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0008 - -2.0 MINOR ENSMUSG00000007659 Bcl2l1 ENSMUST00000173755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007659 Bcl2l1 ENSMUST00000109820 ENSMUSP00000105445 TRANSLATION protein_coding - CCDS16899.1 1 233.0 0.0 4.5 16.5 174.3 1.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000007659 Bcl2l1 ENSMUST00000156688 ENSMUSP00000115611 TRANSLATION protein_coding stop - 2 78.0 0.0 1.0 0.0 55.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000007659 Bcl2l1 ENSMUST00000140436 ENSMUSP00000134596 TRANSLATION protein_coding - - 2 209.0 0.0 3.5 0.0 174.3 0.0 -4,-5 0.0017 2 10.002 MINOR ENSMUSG00000007659 Bcl2l1 ENSMUST00000134357 ENSMUSP00000120024 TRANSLATION protein_coding stop - 2 154.0 0.0 2.5 0.0 126.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000007659 Bcl2l1 ENSMUST00000134902 ENSMUSP00000134614 TRANSLATION protein_coding - - 1 209.0 0.0 3.5 0.0 174.3 0.0 -4,-5 0.0017 2 10.002 MINOR ENSMUSG00000007659 Bcl2l1 ENSMUST00000007803 ENSMUSP00000007803 TRANSLATION protein_coding - CCDS16899.1 1 233.0 0.0 4.5 16.5 174.3 1.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000007659 Bcl2l1 ENSMUST00000146380 ENSMUSP00000114911 TRANSLATION protein_coding stop - 2 96.0 0.0 1.5 0.0 55.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000007659 Bcl2l1 ENSMUST00000128172 ENSMUSP00000117716 TRANSLATION protein_coding stop - 1 188.0 0.0 3.5 1.2 174.3 0.0 -4,-5 0.1013 2 -2.0 MINOR ENSMUSG00000026888 Grb14 ENSMUST00000150643 ENSMUSP00000121571 TRANSLATION protein_coding start - 3 93.0 0.0 2.15 0.0 102.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026888 Grb14 ENSMUST00000134020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026888 Grb14 ENSMUST00000156765 ENSMUSP00000121001 TRANSLATION protein_coding stop - 5 221.0 0.0 4.54 0.0 84.9 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000026888 Grb14 ENSMUST00000028252 ENSMUSP00000028252 TRANSLATION protein_coding - CCDS16071.1 1 538.0 0.0 10.14 7.4 259.6 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000026888 Grb14 ENSMUST00000149193 ENSMUSP00000118115 TRANSLATION protein_coding start - 5 109.0 0.0 2.598 0.0 84.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000026888 Grb14 ENSMUST00000146807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026888 Grb14 ENSMUST00000137085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026888 Grb14 ENSMUST00000145603 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044083 Efcab8 ENSMUST00000126656 ENSMUSP00000135661 TRANSLATION protein_coding - - 5 1323.0 3.0 5.206 0.0 40.6 0.0 -4,-7 0.9973 - 15.0 PRINCIPAL:1 ENSMUSG00000044083 Efcab8 ENSMUST00000175856 ENSMUSP00000134797 TRANSLATION protein_coding start - 2 133.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044083 Efcab8 ENSMUST00000144827 ENSMUSP00000135811 TRANSLATION nonsense_mediated_decay - - 2 203.0 3.0 2.48 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000044083 Efcab8 ENSMUST00000230058 ENSMUSP00000155494 TRANSLATION nonsense_mediated_decay - - - 178.0 4.0 1.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000058318 Phf21a ENSMUST00000138995 ENSMUSP00000125734 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000058318 Phf21a ENSMUST00000111294 ENSMUSP00000106925 TRANSLATION protein_coding - CCDS84556.1 5 641.0 8.0 1.4995 0.3 47.8 0.0 -4,-5 0.2741 10 14.0 ALTERNATIVE:2 ENSMUSG00000058318 Phf21a ENSMUST00000159727 ENSMUSP00000124845 TRANSLATION protein_coding start/stop - 1 185.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 3 -2.0 MINOR ENSMUSG00000058318 Phf21a ENSMUST00000142528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058318 Phf21a ENSMUST00000161067 ENSMUSP00000124255 TRANSLATION protein_coding start/stop - 3 231.0 8.0 1.4995 0.0 47.8 0.0 -4,-7 0.0638 3 -2.0 MINOR ENSMUSG00000058318 Phf21a ENSMUST00000090586 ENSMUSP00000088074 TRANSLATION protein_coding - CCDS50644.1 1 688.0 8.0 1.4995 0.3 47.8 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:2 ENSMUSG00000058318 Phf21a ENSMUST00000160235 - NO_TRANSLATION retained_intron ENSMUSG00000058318 Phf21a ENSMUST00000159961 ENSMUSP00000123955 TRANSLATION protein_coding start - 5 575.0 8.0 1.4995 0.0 47.8 0.0 -4,-5 0.0833 7 -2.0 MINOR ENSMUSG00000058318 Phf21a ENSMUST00000162497 ENSMUSP00000124224 TRANSLATION protein_coding stop - 3 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0204 - -2.0 MINOR ENSMUSG00000058318 Phf21a ENSMUST00000161044 - NO_TRANSLATION retained_intron ENSMUSG00000058318 Phf21a ENSMUST00000128781 ENSMUSP00000125228 TRANSLATION protein_coding stop - 3 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0118 - -2.0 MINOR ENSMUSG00000058318 Phf21a ENSMUST00000111293 ENSMUSP00000106924 TRANSLATION protein_coding - CCDS50644.1 5 688.0 8.0 1.4995 0.3 47.8 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:2 ENSMUSG00000058318 Phf21a ENSMUST00000111291 ENSMUSP00000106922 TRANSLATION protein_coding - CCDS50645.1 1 604.0 8.0 1.4995 0.0 47.8 0.0 -4,-5 0.262 7 14.0 ALTERNATIVE:2 ENSMUSG00000058318 Phf21a ENSMUST00000159366 ENSMUSP00000124238 TRANSLATION protein_coding start/stop - 2 189.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000058318 Phf21a ENSMUST00000162146 ENSMUSP00000124032 TRANSLATION protein_coding stop - 3 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058318 Phf21a ENSMUST00000162188 ENSMUSP00000125628 TRANSLATION protein_coding stop - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058318 Phf21a ENSMUST00000111292 ENSMUSP00000106923 TRANSLATION protein_coding - CCDS16442.1 1 556.0 8.0 1.252 0.0 47.8 0.0 -4,-5 0.118 7 13.01 ALTERNATIVE:2 ENSMUSG00000109322 Or4k77 ENSMUST00000216637 ENSMUSP00000150510 TRANSLATION protein_coding - CCDS16523.1 5 305.0 0.0 1.0 8.0 169.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109322 Or4k77 ENSMUST00000090328 ENSMUSP00000087800 TRANSLATION protein_coding - CCDS16523.1 - 305.0 0.0 1.0 8.0 169.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109322 Or4k77 ENSMUST00000204064 ENSMUSP00000145495 TRANSLATION protein_coding - CCDS16523.1 5 305.0 0.0 1.0 8.0 169.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070495 Ctcfl ENSMUST00000094287 ENSMUSP00000091845 TRANSLATION protein_coding - CCDS38349.1 5 636.0 42.0 6.4 0.0 72.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000041255 Tmco5b ENSMUST00000040856 ENSMUSP00000042247 TRANSLATION protein_coding - CCDS16558.1 1 307.0 0.0 0.0 6.3 392.6 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000017868 Sgk2 ENSMUST00000117123 ENSMUSP00000112468 TRANSLATION protein_coding - CCDS71184.1 1 338.0 16.0 8.45 0.0 201.1 0.0 -4,-7 0.0083 3 12.84 MINOR ENSMUSG00000017868 Sgk2 ENSMUST00000018012 ENSMUSP00000018012 TRANSLATION protein_coding - CCDS17004.1 1 367.0 17.0 9.2 12.9 251.0 0.0 -4,-7 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000017868 Sgk2 ENSMUST00000139053 - NO_TRANSLATION retained_intron ENSMUSG00000075146 Or9m1 ENSMUST00000099844 ENSMUSP00000097432 TRANSLATION protein_coding - CCDS16315.1 - 310.0 0.0 1.0 14.4 158.4 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075146 Or9m1 ENSMUST00000215862 ENSMUSP00000148909 TRANSLATION protein_coding - CCDS16315.1 5 310.0 0.0 1.0 14.4 158.4 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075146 Or9m1 ENSMUST00000215017 ENSMUSP00000149078 TRANSLATION protein_coding - CCDS16315.1 5 310.0 0.0 1.0 14.4 158.4 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078905 Gm14393 ENSMUST00000072895 ENSMUSP00000072668 TRANSLATION protein_coding - CCDS50818.1 2 187.0 15.0 2.3 0.0 146.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078905 Gm14393 ENSMUST00000109066 ENSMUSP00000104694 TRANSLATION protein_coding - - 2 64.0 0.0 1.75 0.4 80.1 0.0 -4,-5 0.0 - 6.582 MINOR ENSMUSG00000036067 Slc2a6 ENSMUST00000045702 ENSMUSP00000049103 TRANSLATION protein_coding - CCDS15822.1 1 497.0 0.0 5.495 0.3 285.8 19.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000036067 Slc2a6 ENSMUST00000129835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036067 Slc2a6 ENSMUST00000102890 ENSMUSP00000099954 TRANSLATION protein_coding - CCDS50544.1 1 443.0 0.0 5.33 2.1 198.1 18.0 -4,-5 0.5375 1 7.408 MINOR ENSMUSG00000036067 Slc2a6 ENSMUST00000153388 ENSMUSP00000122054 TRANSLATION protein_coding stop - 5 85.0 0.0 0.4 0.0 0.0 3.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000036067 Slc2a6 ENSMUST00000145742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036067 Slc2a6 ENSMUST00000135725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053675 Tgm5 ENSMUST00000028721 ENSMUSP00000028721 TRANSLATION protein_coding - CCDS16632.1 1 724.0 7.0 9.8 0.3 332.9 0.0 -4,-6 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000053675 Tgm5 ENSMUST00000142674 - NO_TRANSLATION retained_intron ENSMUSG00000087679 Tmem250-ps ENSMUST00000133808 ENSMUSP00000158596 TRANSLATION protein_coding - - 2 139.0 0.0 1.0 28.4 0.0 2.0 -4,-1 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000087679 Tmem250-ps ENSMUST00000163836 ENSMUSP00000158791 TRANSLATION protein_coding - - - 139.0 0.0 1.0 28.4 0.0 2.0 -4,-1 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000075387 Or1j13 ENSMUST00000100154 ENSMUSP00000097731 TRANSLATION protein_coding - CCDS15974.1 - 313.0 0.0 1.0 8.6 200.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075387 Or1j13 ENSMUST00000213300 ENSMUSP00000150801 TRANSLATION protein_coding - CCDS15974.1 5 313.0 0.0 1.0 8.6 200.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056718 Gm13199 ENSMUST00000071016 ENSMUSP00000063314 TRANSLATION protein_coding - - 1 125.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.5757 - 0.0 PRINCIPAL:1 ENSMUSG00000056718 Gm13199 ENSMUST00000142918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068814 Or12e10 ENSMUST00000079711 ENSMUSP00000078649 TRANSLATION protein_coding - - - 314.0 0.0 1.0 9.4 193.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068814 Or12e10 ENSMUST00000090707 ENSMUSP00000088209 TRANSLATION protein_coding - CCDS16310.1 - 325.0 0.0 1.0 2.0 193.1 5.0 -4,-6 0.5985 - 12.357 MINOR ENSMUSG00000059873 Or5m11b ENSMUST00000082191 ENSMUSP00000080828 TRANSLATION protein_coding - CCDS16230.1 - 324.0 0.0 1.0 3.8 186.9 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000059873 Or5m11b ENSMUST00000217244 ENSMUSP00000150637 TRANSLATION protein_coding - CCDS16230.1 5 324.0 0.0 1.0 3.8 186.9 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000074825 Itpripl1 ENSMUST00000110386 ENSMUSP00000106016 TRANSLATION protein_coding - CCDS50701.1 1 547.0 0.0 0.0 10.1 46.7 1.0 -2,-4 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000074825 Itpripl1 ENSMUST00000154021 ENSMUSP00000122289 TRANSLATION protein_coding - CCDS50701.1 1 547.0 0.0 0.0 10.1 46.7 1.0 -2,-4 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000074825 Itpripl1 ENSMUST00000132773 ENSMUSP00000118487 TRANSLATION protein_coding - - 1 163.0 0.0 0.0 0.0 0.0 0.0 -2,-4 0.0 - 0.0 MINOR ENSMUSG00000068735 Trp53i11 ENSMUST00000132182 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068735 Trp53i11 ENSMUST00000147377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068735 Trp53i11 ENSMUST00000090554 ENSMUSP00000088042 TRANSLATION protein_coding - CCDS16452.1 1 189.0 0.0 2.63 28.7 285.4 4.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000068735 Trp53i11 ENSMUST00000127173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068735 Trp53i11 ENSMUST00000150462 ENSMUSP00000115918 TRANSLATION protein_coding stop - 5 87.0 0.0 0.4 0.0 141.5 1.0 -4,-7 0.0015 3 -2.0 MINOR ENSMUSG00000068735 Trp53i11 ENSMUST00000140172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068735 Trp53i11 ENSMUST00000143164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068735 Trp53i11 ENSMUST00000111266 ENSMUSP00000106897 TRANSLATION protein_coding - CCDS16452.1 1 189.0 0.0 2.63 28.7 285.4 4.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026869 Psmd5 ENSMUST00000143456 - NO_TRANSLATION retained_intron ENSMUSG00000026869 Psmd5 ENSMUST00000028225 ENSMUSP00000028225 TRANSLATION protein_coding - CCDS15953.1 1 504.0 0.0 10.5 28.0 657.7 0.0 -4,-6 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000026869 Psmd5 ENSMUST00000202917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026869 Psmd5 ENSMUST00000189715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026869 Psmd5 ENSMUST00000135575 ENSMUSP00000116880 TRANSLATION protein_coding start - 3 140.0 0.0 2.5 0.0 112.7 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000075272 Ift70a2 ENSMUST00000099995 ENSMUSP00000097575 TRANSLATION protein_coding - CCDS38151.1 - 664.0 0.0 1.0 12.5 15.0 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039254 Pomt1 ENSMUST00000123740 ENSMUSP00000116543 TRANSLATION protein_coding stop - 5 233.0 0.0 4.15 0.0 281.5 7.0 -3,-5 0.0045 2 -2.0 MINOR ENSMUSG00000039254 Pomt1 ENSMUST00000129163 - NO_TRANSLATION retained_intron ENSMUSG00000039254 Pomt1 ENSMUST00000036473 ENSMUSP00000038722 TRANSLATION protein_coding - CCDS15908.1 1 746.0 0.0 10.299 0.4 539.5 9.0 -4,-7 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000039254 Pomt1 ENSMUST00000146485 ENSMUSP00000116117 TRANSLATION protein_coding stop - 5 227.0 0.0 3.55 0.0 243.1 7.0 -4,-5 0.0034 2 -2.0 MINOR ENSMUSG00000039254 Pomt1 ENSMUST00000151598 - NO_TRANSLATION retained_intron ENSMUSG00000039254 Pomt1 ENSMUST00000132516 ENSMUSP00000118382 TRANSLATION nonsense_mediated_decay start - 5 13.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0021 - -2.0 MINOR ENSMUSG00000039254 Pomt1 ENSMUST00000192998 ENSMUSP00000142212 TRANSLATION nonsense_mediated_decay start - 3 65.0 0.0 0.125 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039254 Pomt1 ENSMUST00000132853 - NO_TRANSLATION retained_intron ENSMUSG00000039254 Pomt1 ENSMUST00000154684 - NO_TRANSLATION retained_intron ENSMUSG00000039254 Pomt1 ENSMUST00000138000 - NO_TRANSLATION retained_intron ENSMUSG00000039254 Pomt1 ENSMUST00000126784 - NO_TRANSLATION retained_intron ENSMUSG00000078881 Gm14434 ENSMUST00000122097 ENSMUSP00000112478 TRANSLATION protein_coding - CCDS57197.1 5 498.0 59.0 2.3 0.1 394.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078881 Gm14434 ENSMUST00000120521 ENSMUSP00000113254 TRANSLATION protein_coding - - 3 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078881 Gm14434 ENSMUST00000120959 ENSMUSP00000113558 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078865 Gm14406 ENSMUST00000108943 ENSMUSP00000104571 TRANSLATION protein_coding - - 2 64.0 0.0 1.75 0.4 75.1 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078865 Gm14406 ENSMUST00000249359 ENSMUSP00000159717 TRANSLATION protein_coding - - - 64.0 0.0 1.75 0.4 75.1 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078865 Gm14406 ENSMUST00000108945 ENSMUSP00000104573 TRANSLATION protein_coding - - 3 426.0 43.0 2.3 0.0 294.9 0.0 -4,-5 0.7974 - 18.0 PRINCIPAL:1 ENSMUSG00000036770 Stpg3 ENSMUST00000114363 ENSMUSP00000110003 TRANSLATION protein_coding - - 1 251.0 0.0 0.0 0.1 30.4 0.0 -4,-1 0.0538 1 6.0 MINOR ENSMUSG00000036770 Stpg3 ENSMUST00000124661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036770 Stpg3 ENSMUST00000043774 ENSMUSP00000037603 TRANSLATION protein_coding - CCDS50525.1 1 306.0 0.0 1.0 0.4 30.4 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000036770 Stpg3 ENSMUST00000155706 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036770 Stpg3 ENSMUST00000149509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027479 Mapre1 ENSMUST00000123795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027479 Mapre1 ENSMUST00000028981 ENSMUSP00000028981 TRANSLATION protein_coding - CCDS16917.1 1 268.0 3.0 5.0 7.4 114.8 0.0 -4,-6 1.0 9 17.0 PRINCIPAL:1 ENSMUSG00000027479 Mapre1 ENSMUST00000123570 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050128 Or5m10 ENSMUST00000213441 ENSMUSP00000149138 TRANSLATION protein_coding - CCDS16226.1 5 311.0 0.0 1.0 6.3 174.5 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050128 Or5m10 ENSMUST00000056408 ENSMUSP00000059849 TRANSLATION protein_coding - CCDS16226.1 - 311.0 0.0 1.0 6.3 174.5 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000057761 Or5m10b ENSMUST00000054736 ENSMUSP00000059312 TRANSLATION protein_coding - CCDS16225.1 - 315.0 0.0 1.0 10.7 172.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027326 Knl1 ENSMUST00000028802 ENSMUSP00000028802 TRANSLATION protein_coding - CCDS38203.1 5 2119.0 0.0 6.25 0.0 0.0 0.0 -4,-5 1.0 14 6.0 PRINCIPAL:1 ENSMUSG00000027326 Knl1 ENSMUST00000099542 ENSMUSP00000097140 TRANSLATION protein_coding - CCDS38203.1 5 2119.0 0.0 6.25 0.0 0.0 0.0 -4,-5 1.0 14 6.0 PRINCIPAL:1 ENSMUSG00000027326 Knl1 ENSMUST00000028799 ENSMUSP00000028799 TRANSLATION protein_coding - - 1 1612.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1888 12 0.0 MINOR ENSMUSG00000027326 Knl1 ENSMUST00000152380 ENSMUSP00000118646 TRANSLATION protein_coding stop - 1 484.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0443 5 -2.0 MINOR ENSMUSG00000027326 Knl1 ENSMUST00000153300 ENSMUSP00000120905 TRANSLATION protein_coding stop - 5 91.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0258 - -2.0 MINOR ENSMUSG00000075197 Or8k1 ENSMUST00000213987 ENSMUSP00000148873 TRANSLATION protein_coding - CCDS16245.1 5 316.0 0.0 1.0 8.3 170.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075197 Or8k1 ENSMUST00000099902 ENSMUSP00000097486 TRANSLATION protein_coding - CCDS16245.1 - 316.0 0.0 1.0 8.3 170.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027286 Lrrc57 ENSMUST00000141932 - NO_TRANSLATION retained_intron ENSMUSG00000027286 Lrrc57 ENSMUST00000102497 ENSMUSP00000099555 TRANSLATION protein_coding - CCDS16623.1 1 239.0 2.0 5.58 36.2 68.9 0.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000027286 Lrrc57 ENSMUST00000102499 ENSMUSP00000099557 TRANSLATION protein_coding - CCDS16623.1 1 239.0 2.0 5.58 36.2 68.9 0.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000027286 Lrrc57 ENSMUST00000102498 ENSMUSP00000099556 TRANSLATION protein_coding - CCDS16623.1 5 239.0 2.0 5.58 36.2 68.9 0.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000027286 Lrrc57 ENSMUST00000133612 ENSMUSP00000121638 TRANSLATION protein_coding stop - 1 218.0 2.0 4.75 0.0 68.9 0.0 -4,-7 0.0066 10 -2.0 MINOR ENSMUSG00000027286 Lrrc57 ENSMUST00000135465 ENSMUSP00000117895 TRANSLATION protein_coding start - 3 124.0 0.0 2.33 0.0 29.5 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000027286 Lrrc57 ENSMUST00000102496 ENSMUSP00000099554 TRANSLATION protein_coding - CCDS16623.1 1 239.0 2.0 5.58 36.2 68.9 0.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000027490 E2f1 ENSMUST00000103145 ENSMUSP00000099434 TRANSLATION protein_coding - CCDS16935.1 1 430.0 0.0 3.9 5.3 202.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027490 E2f1 ENSMUST00000000894 ENSMUSP00000000894 TRANSLATION protein_coding - CCDS71165.1 1 385.0 0.0 3.9 0.0 202.1 0.0 -2,-5 0.1789 - 12.0 MINOR ENSMUSG00000035168 Tanc1 ENSMUST00000126271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035168 Tanc1 ENSMUST00000139863 ENSMUSP00000123345 TRANSLATION protein_coding - CCDS16054.1 1 1856.0 0.0 5.04 4.3 140.2 0.0 -4,-5 1.0 41 10.0 PRINCIPAL:4 ENSMUSG00000035168 Tanc1 ENSMUST00000136248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035168 Tanc1 ENSMUST00000128030 - NO_TRANSLATION retained_intron ENSMUSG00000035168 Tanc1 ENSMUST00000162857 - NO_TRANSLATION retained_intron ENSMUSG00000035168 Tanc1 ENSMUST00000127013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035168 Tanc1 ENSMUST00000056900 - NO_TRANSLATION retained_intron ENSMUSG00000035168 Tanc1 ENSMUST00000147650 - NO_TRANSLATION retained_intron ENSMUSG00000035168 Tanc1 ENSMUST00000112568 ENSMUSP00000108187 TRANSLATION protein_coding - CCDS71057.1 5 1849.0 0.0 5.04 4.3 140.2 0.0 -4,-5 0.8786 41 10.0 ALTERNATIVE:2 ENSMUSG00000035168 Tanc1 ENSMUST00000037526 ENSMUSP00000036003 TRANSLATION protein_coding - CCDS16054.1 5 1856.0 0.0 5.04 4.3 140.2 0.0 -4,-5 1.0 41 10.0 PRINCIPAL:4 ENSMUSG00000035168 Tanc1 ENSMUST00000142573 - NO_TRANSLATION retained_intron ENSMUSG00000034226 Rhov ENSMUST00000037360 ENSMUSP00000041411 TRANSLATION protein_coding - CCDS16598.1 1 236.0 22.0 2.5 16.6 155.9 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000043892 Or2ah1 ENSMUST00000214416 ENSMUSP00000151090 TRANSLATION protein_coding - CCDS16222.1 5 311.0 0.0 1.0 13.1 196.8 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000043892 Or2ah1 ENSMUST00000054201 ENSMUSP00000050833 TRANSLATION protein_coding - CCDS16222.1 - 311.0 0.0 1.0 13.1 196.8 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036040 Adamtsl2 ENSMUST00000139633 - NO_TRANSLATION retained_intron ENSMUSG00000036040 Adamtsl2 ENSMUST00000169787 - NO_TRANSLATION retained_intron ENSMUSG00000036040 Adamtsl2 ENSMUST00000143246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036040 Adamtsl2 ENSMUST00000091233 ENSMUSP00000088774 TRANSLATION protein_coding - CCDS15824.1 1 957.0 3.0 3.92 6.9 238.7 0.0 1,-2 1.0 2 17.0 PRINCIPAL:1 ENSMUSG00000036040 Adamtsl2 ENSMUST00000130600 - NO_TRANSLATION retained_intron ENSMUSG00000061875 Or12e13 ENSMUST00000215230 ENSMUSP00000149438 TRANSLATION protein_coding - CCDS16311.1 5 314.0 0.0 1.0 9.4 182.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061875 Or12e13 ENSMUST00000077580 ENSMUSP00000076778 TRANSLATION protein_coding - CCDS16311.1 - 314.0 0.0 1.0 9.4 182.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026778 Prkcq ENSMUST00000192461 - NO_TRANSLATION retained_intron ENSMUSG00000026778 Prkcq ENSMUST00000114853 - NO_TRANSLATION retained_intron ENSMUSG00000026778 Prkcq ENSMUST00000195207 - NO_TRANSLATION retained_intron ENSMUSG00000026778 Prkcq ENSMUST00000195628 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026778 Prkcq ENSMUST00000028118 ENSMUSP00000028118 TRANSLATION protein_coding - CCDS15682.1 1 707.0 26.0 13.346 11.2 359.4 0.0 -4,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000026778 Prkcq ENSMUST00000102970 ENSMUSP00000100035 TRANSLATION protein_coding stop - 5 643.0 26.0 11.946 1.0 297.1 0.0 -4,-5 0.0195 11 -2.0 MINOR ENSMUSG00000070855 Or10ag54 ENSMUST00000090717 ENSMUSP00000132837 TRANSLATION protein_coding - CCDS79817.1 - 307.0 0.0 1.0 0.8 174.2 6.0 -2,-5 0.5302 - 8.0 ALTERNATIVE:2 ENSMUSG00000070855 Or10ag54 ENSMUST00000216364 ENSMUSP00000149674 TRANSLATION protein_coding - - 5 328.0 0.0 1.0 0.0 174.2 6.0 -4,-7 0.8184 - 8.0 PRINCIPAL:2 ENSMUSG00000057110 Cntrl ENSMUST00000124081 ENSMUSP00000143087 TRANSLATION nonsense_mediated_decay start - 3 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057110 Cntrl ENSMUST00000150807 ENSMUSP00000142683 TRANSLATION protein_coding stop - 3 139.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057110 Cntrl ENSMUST00000143807 - NO_TRANSLATION retained_intron ENSMUSG00000057110 Cntrl ENSMUST00000028237 ENSMUSP00000028237 TRANSLATION protein_coding - - 5 2334.0 0.0 3.9 0.4 30.9 0.0 -4,-1 0.674 18 8.0 ALTERNATIVE:2 ENSMUSG00000057110 Cntrl ENSMUST00000156933 ENSMUSP00000118731 TRANSLATION protein_coding - - 5 2334.0 0.0 3.9 0.4 30.9 0.0 -4,-1 0.674 18 8.0 ALTERNATIVE:2 ENSMUSG00000057110 Cntrl ENSMUST00000113037 ENSMUSP00000108660 TRANSLATION protein_coding - - 5 1780.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.0607 16 1.0 MINOR ENSMUSG00000057110 Cntrl ENSMUST00000028235 ENSMUSP00000028235 TRANSLATION protein_coding - - 1 559.0 0.0 3.9 0.0 33.4 0.0 -4,-1 0.1099 2 7.334 ALTERNATIVE:2 ENSMUSG00000057110 Cntrl ENSMUST00000130457 - NO_TRANSLATION retained_intron ENSMUSG00000057110 Cntrl ENSMUST00000201787 ENSMUSP00000143914 TRANSLATION protein_coding start - 3 122.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057110 Cntrl ENSMUST00000123884 ENSMUSP00000119760 TRANSLATION protein_coding start - 1 635.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0058 2 -2.0 MINOR ENSMUSG00000057110 Cntrl ENSMUST00000113033 ENSMUSP00000108656 TRANSLATION protein_coding - - 5 481.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0028 2 0.0 MINOR ENSMUSG00000057110 Cntrl ENSMUST00000113034 ENSMUSP00000108657 TRANSLATION protein_coding stop - 1 987.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0167 6 -2.0 MINOR ENSMUSG00000057110 Cntrl ENSMUST00000113032 ENSMUSP00000108655 TRANSLATION protein_coding - CCDS57170.2 1 2333.0 0.0 3.9 0.4 30.9 0.0 -4,-1 1.0 18 8.0 PRINCIPAL:2 ENSMUSG00000027639 Samhd1 ENSMUST00000152866 - NO_TRANSLATION retained_intron ENSMUSG00000027639 Samhd1 ENSMUST00000057725 ENSMUSP00000059717 TRANSLATION protein_coding - CCDS16973.2 1 658.0 12.0 13.78 0.0 121.7 0.0 -4,-7 1.0 32 18.0 PRINCIPAL:1 ENSMUSG00000027639 Samhd1 ENSMUST00000139149 - NO_TRANSLATION retained_intron ENSMUSG00000027639 Samhd1 ENSMUST00000139263 ENSMUSP00000124935 TRANSLATION protein_coding start - 1 631.0 12.0 13.18 0.0 121.7 0.0 -4,-5 0.0566 30 -2.0 MINOR ENSMUSG00000027639 Samhd1 ENSMUST00000149313 - NO_TRANSLATION retained_intron ENSMUSG00000027639 Samhd1 ENSMUST00000142508 - NO_TRANSLATION retained_intron ENSMUSG00000027639 Samhd1 ENSMUST00000123932 ENSMUSP00000124599 TRANSLATION nonsense_mediated_decay - - 2 150.0 0.0 1.55 0.0 41.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000027639 Samhd1 ENSMUST00000088523 ENSMUSP00000085880 TRANSLATION protein_coding - CCDS50783.1 5 651.0 12.0 13.18 0.0 121.7 0.0 -4,-7 0.325 30 16.8 MINOR ENSMUSG00000027639 Samhd1 ENSMUST00000160213 - NO_TRANSLATION retained_intron ENSMUSG00000027639 Samhd1 ENSMUST00000109549 ENSMUSP00000105176 TRANSLATION protein_coding - - 1 582.0 12.0 12.18 0.0 121.7 0.0 -4,-7 0.0409 27 14.802 MINOR ENSMUSG00000009030 Pdcl ENSMUST00000009174 ENSMUSP00000009174 TRANSLATION protein_coding - CCDS15998.1 1 301.0 0.0 1.72 16.5 526.9 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000009030 Pdcl ENSMUST00000147703 ENSMUSP00000119372 TRANSLATION protein_coding stop - 3 193.0 0.0 0.92 0.0 291.6 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000009030 Pdcl ENSMUST00000112940 ENSMUSP00000108562 TRANSLATION protein_coding - CCDS15998.1 1 301.0 0.0 1.72 16.5 526.9 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000009030 Pdcl ENSMUST00000138314 ENSMUSP00000145483 TRANSLATION nonsense_mediated_decay - - 3 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074945 Or4f61 ENSMUST00000099598 ENSMUSP00000097193 TRANSLATION protein_coding - CCDS16544.1 - 312.0 0.0 1.0 11.5 139.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074945 Or4f61 ENSMUST00000207976 ENSMUSP00000146418 TRANSLATION protein_coding - CCDS16544.1 5 312.0 0.0 1.0 11.5 139.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070852 Or12e9 ENSMUST00000213792 ENSMUSP00000150120 TRANSLATION protein_coding - CCDS16288.1 5 314.0 0.0 1.0 8.3 182.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070852 Or12e9 ENSMUST00000062555 ENSMUSP00000058201 TRANSLATION protein_coding - CCDS16288.1 - 314.0 0.0 1.0 8.3 182.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050558 Prokr2 ENSMUST00000145995 ENSMUSP00000115564 TRANSLATION protein_coding stop - 3 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050558 Prokr2 ENSMUST00000142766 ENSMUSP00000124526 TRANSLATION protein_coding - - 1 220.0 0.0 1.0 0.0 62.6 8.0 1,-3 0.0056 - 2.64 MINOR ENSMUSG00000050558 Prokr2 ENSMUST00000110156 ENSMUSP00000105784 TRANSLATION protein_coding - CCDS16773.1 5 381.0 0.0 2.33 10.9 161.5 14.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050558 Prokr2 ENSMUST00000049997 ENSMUSP00000056659 TRANSLATION protein_coding - CCDS16773.1 1 381.0 0.0 2.33 10.9 161.5 14.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050558 Prokr2 ENSMUST00000110157 ENSMUSP00000105785 TRANSLATION protein_coding - - 1 198.0 0.0 1.0 0.0 72.0 6.0 -4,-7 0.0021 - 3.204 MINOR ENSMUSG00000098505 Gm14496 ENSMUST00000071760 ENSMUSP00000071670 TRANSLATION protein_coding - CCDS57205.1 5 849.0 3.0 2.33 0.4 375.4 7.0 3,-2 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000098505 Gm14496 ENSMUST00000236373 ENSMUSP00000158134 TRANSLATION protein_coding - - - 848.0 3.0 2.33 0.4 375.7 7.0 3,-2 0.7521 - 11.0 ALTERNATIVE:2 ENSMUSG00000098505 Gm14496 ENSMUST00000089788 - NO_TRANSLATION retained_intron ENSMUSG00000098505 Gm14496 ENSMUST00000184507 ENSMUSP00000157614 TRANSLATION protein_coding - - - 774.0 3.0 1.93 0.4 371.8 7.0 3,-2 0.0557 - 9.968 MINOR ENSMUSG00000079103 Tgm7 ENSMUST00000238428 ENSMUSP00000158669 TRANSLATION protein_coding start - - 707.0 7.0 9.532 6.1 240.3 0.0 -4,-5 0.8765 - -2.0 MINOR ENSMUSG00000079103 Tgm7 ENSMUST00000110675 ENSMUSP00000106303 TRANSLATION protein_coding - - 5 710.0 7.0 9.532 6.1 240.3 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000062793 Or9m2 ENSMUST00000102622 ENSMUSP00000099682 TRANSLATION protein_coding - CCDS16319.1 - 313.0 0.0 1.0 5.3 152.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047356 Lcn10 ENSMUST00000058912 ENSMUSP00000059353 TRANSLATION protein_coding - CCDS15787.1 1 182.0 0.0 4.08 0.1 27.5 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045493 Bhlhe23 ENSMUST00000108878 ENSMUSP00000104506 TRANSLATION protein_coding - CCDS17187.1 - 223.0 0.0 0.6 3.6 50.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026831 Pierce1 ENSMUST00000086370 ENSMUSP00000083557 TRANSLATION protein_coding - CCDS15837.1 1 167.0 0.0 2.7 0.7 146.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026831 Pierce1 ENSMUST00000127683 ENSMUSP00000116111 TRANSLATION protein_coding stop - 3 132.0 0.0 1.35 0.0 101.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026831 Pierce1 ENSMUST00000126242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027495 Fam210b ENSMUST00000028995 ENSMUSP00000028995 TRANSLATION protein_coding - CCDS17128.1 1 190.0 0.0 1.8 8.4 94.0 0.0 -1,1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000044349 Snhg11 ENSMUST00000138307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044349 Snhg11 ENSMUST00000109488 ENSMUSP00000105114 TRANSLATION protein_coding - CCDS38308.1 1 87.0 0.0 0.0 0.1 0.0 0.0 -4,0 0.8584 - 0.0 PRINCIPAL:1 ENSMUSG00000044349 Snhg11 ENSMUST00000239345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044349 Snhg11 ENSMUST00000137320 - NO_TRANSLATION retained_intron ENSMUSG00000044349 Snhg11 ENSMUST00000239310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044349 Snhg11 ENSMUST00000239262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044349 Snhg11 ENSMUST00000148965 - NO_TRANSLATION retained_intron ENSMUSG00000044349 Snhg11 ENSMUST00000149303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074764 Sel1l2 ENSMUST00000122367 ENSMUSP00000113800 TRANSLATION protein_coding - CCDS50732.1 1 688.0 0.0 7.99 3.7 172.3 0.0 -2,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000074764 Sel1l2 ENSMUST00000120133 ENSMUSP00000112724 TRANSLATION protein_coding - - 1 94.0 0.0 0.0 0.0 0.0 0.0 -2,-4 0.0 - 0.0 MINOR ENSMUSG00000074764 Sel1l2 ENSMUST00000134475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027517 Ankrd60 ENSMUST00000239457 ENSMUSP00000159317 TRANSLATION protein_coding - - - 229.0 0.0 3.75 0.0 37.8 0.0 -4,-5 0.0038 - 4.998 ALTERNATIVE:2 ENSMUSG00000027517 Ankrd60 ENSMUST00000147693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027517 Ankrd60 ENSMUST00000109112 ENSMUSP00000104740 TRANSLATION protein_coding - - 3 198.0 0.0 3.0 0.1 37.8 0.0 -4,-7 0.1443 - 3.498 MINOR ENSMUSG00000027517 Ankrd60 ENSMUST00000119453 ENSMUSP00000113291 TRANSLATION protein_coding - CCDS50815.1 2 318.0 0.0 4.25 0.0 37.8 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000051379 Flrt3 ENSMUST00000056760 ENSMUSP00000053399 TRANSLATION protein_coding - CCDS16806.1 1 649.0 0.0 0.8 30.9 76.9 1.0 0,-3 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000051379 Flrt3 ENSMUST00000110057 ENSMUSP00000105684 TRANSLATION protein_coding - CCDS16806.1 1 649.0 0.0 0.8 30.9 76.9 1.0 0,-3 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000051379 Flrt3 ENSMUST00000172544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027641 Rbl1 ENSMUST00000124518 - NO_TRANSLATION retained_intron ENSMUSG00000027641 Rbl1 ENSMUST00000141296 - NO_TRANSLATION retained_intron ENSMUSG00000027641 Rbl1 ENSMUST00000029170 ENSMUSP00000029170 TRANSLATION protein_coding - CCDS16974.1 1 1063.0 0.0 5.47 9.6 631.6 0.0 -4,-5 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000027641 Rbl1 ENSMUST00000154721 - NO_TRANSLATION retained_intron ENSMUSG00000075094 Or4c123 ENSMUST00000099787 ENSMUSP00000097375 TRANSLATION protein_coding - CCDS16373.1 - 305.0 0.0 1.0 9.7 149.0 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070866 Zfp804a ENSMUST00000047527 ENSMUSP00000041941 TRANSLATION protein_coding - CCDS38160.1 1 1200.0 4.0 2.0 0.1 26.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000070866 Zfp804a ENSMUST00000127187 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064289 Tank ENSMUST00000112495 ENSMUSP00000108114 TRANSLATION protein_coding - CCDS50593.1 1 413.0 4.0 0.0 2.7 88.0 0.0 -4,-5 0.9643 7 7.0 ALTERNATIVE:2 ENSMUSG00000064289 Tank ENSMUST00000143515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064289 Tank ENSMUST00000112502 ENSMUSP00000108121 TRANSLATION protein_coding - - 5 447.0 4.0 0.0 0.0 88.0 0.0 -4,-1 0.0618 7 6.0 ALTERNATIVE:2 ENSMUSG00000064289 Tank ENSMUST00000112501 ENSMUSP00000108120 TRANSLATION protein_coding - CCDS50592.1 1 414.0 4.0 0.0 2.7 88.0 0.0 -4,-5 1.0 7 7.0 PRINCIPAL:4 ENSMUSG00000064289 Tank ENSMUST00000078074 ENSMUSP00000077219 TRANSLATION protein_coding - CCDS16061.1 1 448.0 4.0 0.0 0.0 88.0 0.0 -4,-1 0.1639 7 6.0 ALTERNATIVE:2 ENSMUSG00000064289 Tank ENSMUST00000136688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064289 Tank ENSMUST00000139533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064289 Tank ENSMUST00000141544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064289 Tank ENSMUST00000154693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064289 Tank ENSMUST00000145632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064289 Tank ENSMUST00000112494 ENSMUSP00000108113 TRANSLATION protein_coding - - 1 360.0 0.0 0.0 0.0 88.0 0.0 -4,-5 0.0438 7 2.0 MINOR ENSMUSG00000027227 Sord ENSMUST00000110551 ENSMUSP00000106180 TRANSLATION protein_coding - CCDS16657.1 1 357.0 24.0 8.0 13.0 82.6 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000027166 Dnajc24 ENSMUST00000133569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027166 Dnajc24 ENSMUST00000151581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027166 Dnajc24 ENSMUST00000102555 ENSMUSP00000099615 TRANSLATION protein_coding - CCDS16501.1 1 148.0 4.0 3.83 20.7 110.0 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000027166 Dnajc24 ENSMUST00000124163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027166 Dnajc24 ENSMUST00000155811 ENSMUSP00000122029 TRANSLATION protein_coding start - 2 116.0 4.0 2.75 0.0 98.8 0.0 -4,-5 0.0017 1 -2.0 MINOR ENSMUSG00000023216 Epb42 ENSMUST00000102490 ENSMUSP00000099548 TRANSLATION protein_coding - CCDS16631.1 1 691.0 0.0 7.58 9.2 299.4 0.0 -4,-5 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000023216 Epb42 ENSMUST00000145812 - NO_TRANSLATION retained_intron ENSMUSG00000023216 Epb42 ENSMUST00000147444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023216 Epb42 ENSMUST00000023987 ENSMUSP00000023987 TRANSLATION protein_coding - - 1 673.0 0.0 6.08 0.0 202.9 0.0 -4,-5 0.0218 14 3.21 MINOR ENSMUSG00000023216 Epb42 ENSMUST00000124703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023216 Epb42 ENSMUST00000128360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023216 Epb42 ENSMUST00000152217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057378 Ryr3 ENSMUST00000142537 - NO_TRANSLATION retained_intron ENSMUSG00000057378 Ryr3 ENSMUST00000208290 ENSMUSP00000147250 TRANSLATION protein_coding - CCDS50661.2 5 4868.0 0.0 42.368 4.2 1912.4 0.0 -4,-5 1.0 22 10.0 PRINCIPAL:4 ENSMUSG00000057378 Ryr3 ENSMUST00000146187 - NO_TRANSLATION retained_intron ENSMUSG00000057378 Ryr3 ENSMUST00000134358 ENSMUSP00000147196 TRANSLATION protein_coding - - 5 4858.0 0.0 40.8055 1.0 1912.4 0.0 -4,-5 0.5286 22 4.874 MINOR ENSMUSG00000057378 Ryr3 ENSMUST00000080673 ENSMUSP00000079503 TRANSLATION protein_coding - - 5 4863.0 0.0 42.368 4.2 1912.4 0.0 -4,-5 0.8414 22 10.0 ALTERNATIVE:2 ENSMUSG00000057378 Ryr3 ENSMUST00000091818 ENSMUSP00000089426 TRANSLATION protein_coding - - 5 4888.0 0.0 42.038 0.0 1903.2 0.0 -4,-5 0.3191 22 7.14 MINOR ENSMUSG00000057378 Ryr3 ENSMUST00000128192 - NO_TRANSLATION retained_intron ENSMUSG00000057378 Ryr3 ENSMUST00000207603 - NO_TRANSLATION retained_intron ENSMUSG00000057378 Ryr3 ENSMUST00000156757 - NO_TRANSLATION retained_intron ENSMUSG00000057378 Ryr3 ENSMUST00000208574 - NO_TRANSLATION retained_intron ENSMUSG00000057378 Ryr3 ENSMUST00000208135 ENSMUSP00000146719 TRANSLATION protein_coding start/stop - 5 46.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0211 - -2.0 MINOR ENSMUSG00000057378 Ryr3 ENSMUST00000208151 ENSMUSP00000146449 TRANSLATION protein_coding - - 5 4834.0 0.0 42.368 0.3 1794.5 0.0 -4,-5 0.3447 22 7.6 MINOR ENSMUSG00000111174 Or4a68 ENSMUST00000216123 ENSMUSP00000150256 TRANSLATION protein_coding - CCDS16380.1 5 314.0 0.0 1.0 6.2 152.8 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111174 Or4a68 ENSMUST00000215362 ENSMUSP00000149973 TRANSLATION protein_coding - CCDS16380.1 - 314.0 0.0 1.0 6.2 152.8 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000078896 Zfp965 ENSMUST00000109043 ENSMUSP00000104671 TRANSLATION protein_coding - - 5 138.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - 1.308 MINOR ENSMUSG00000078896 Zfp965 ENSMUST00000109002 ENSMUSP00000104630 TRANSLATION protein_coding - CCDS79872.1 5 318.0 30.0 2.75 0.0 205.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078896 Zfp965 ENSMUST00000109042 ENSMUSP00000104670 TRANSLATION protein_coding - - 1 83.0 0.0 1.75 0.0 71.2 0.0 -4,-6 0.0 - 3.816 MINOR ENSMUSG00000078896 Zfp965 ENSMUST00000143490 ENSMUSP00000120552 TRANSLATION protein_coding - - 5 98.0 0.0 1.75 0.0 71.2 0.0 -4,-6 0.0 - 3.816 MINOR ENSMUSG00000015776 Med22 ENSMUST00000139815 ENSMUSP00000116442 TRANSLATION protein_coding stop - 3 168.0 0.0 1.75 0.0 111.7 0.0 -4,-7 0.0054 3 -2.0 MINOR ENSMUSG00000015776 Med22 ENSMUST00000015920 ENSMUSP00000015920 TRANSLATION protein_coding - CCDS15813.1 2 200.0 0.0 2.75 25.0 128.6 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000015776 Med22 ENSMUST00000102899 ENSMUSP00000099963 TRANSLATION protein_coding - CCDS15814.1 1 140.0 0.0 2.75 24.0 128.6 0.0 -4,-7 0.8684 3 11.832 ALTERNATIVE:1 ENSMUSG00000099486 Or4c122 ENSMUST00000215447 ENSMUSP00000150878 TRANSLATION protein_coding - - 2 311.0 0.0 1.0 5.7 162.8 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000099486 Or4c122 ENSMUST00000190757 ENSMUSP00000139920 TRANSLATION protein_coding - CCDS16371.1 - 323.0 0.0 1.0 0.0 162.8 5.0 -4,-7 0.3601 - 12.0 MINOR ENSMUSG00000099486 Or4c122 ENSMUST00000216392 ENSMUSP00000150633 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 5.7 162.8 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027291 Vps39 ENSMUST00000102501 ENSMUSP00000099559 TRANSLATION protein_coding - CCDS38210.1 1 886.0 4.0 3.416 11.6 329.2 0.0 -4,-6 0.8454 18 14.048 ALTERNATIVE:1 ENSMUSG00000027291 Vps39 ENSMUST00000145193 - NO_TRANSLATION retained_intron ENSMUSG00000027291 Vps39 ENSMUST00000138854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027291 Vps39 ENSMUST00000126526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027291 Vps39 ENSMUST00000132476 - NO_TRANSLATION retained_intron ENSMUSG00000027291 Vps39 ENSMUST00000028752 ENSMUSP00000028752 TRANSLATION protein_coding - CCDS16619.1 1 875.0 4.0 2.8535 21.7 332.5 0.0 -4,-6 1.0 18 14.872 PRINCIPAL:4 ENSMUSG00000027291 Vps39 ENSMUST00000133260 - NO_TRANSLATION retained_intron ENSMUSG00000027291 Vps39 ENSMUST00000156296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027291 Vps39 ENSMUST00000147085 - NO_TRANSLATION retained_intron ENSMUSG00000027291 Vps39 ENSMUST00000129857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027568 Ntsr1 ENSMUST00000170448 ENSMUSP00000127548 TRANSLATION protein_coding - CCDS17177.1 1 424.0 0.0 3.6 5.5 171.2 7.0 -4,-6 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000027568 Ntsr1 ENSMUST00000029084 ENSMUSP00000029084 TRANSLATION protein_coding - CCDS17177.1 1 424.0 0.0 3.6 5.5 171.2 7.0 -4,-6 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000036449 Lcn8 ENSMUST00000038482 ENSMUSP00000043902 TRANSLATION protein_coding - CCDS15786.1 1 175.0 0.0 4.08 0.3 58.7 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026774 Potegl ENSMUST00000114505 ENSMUSP00000110150 TRANSLATION protein_coding - - 5 307.0 0.0 5.23 0.1 61.0 0.0 -4,-7 0.0016 - 7.92 MINOR ENSMUSG00000026774 Potegl ENSMUST00000028113 ENSMUSP00000028113 TRANSLATION protein_coding - CCDS50517.1 1 382.0 0.0 6.23 0.0 93.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074884 Serf2 ENSMUST00000154418 ENSMUSP00000123257 TRANSLATION nonsense_mediated_decay - - 5 48.0 0.0 1.0 0.0 47.6 0.0 -4,-5 0.0112 2 -2.0 MINOR ENSMUSG00000074884 Serf2 ENSMUST00000148575 ENSMUSP00000121895 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 1.0 0.0 47.6 0.0 -4,-5 0.0697 2 -2.0 MINOR ENSMUSG00000074884 Serf2 ENSMUST00000110615 ENSMUSP00000106245 TRANSLATION protein_coding - - 2 42.0 0.0 1.0 0.0 47.6 0.0 -4,-5 0.1042 2 9.75 MINOR ENSMUSG00000074884 Serf2 ENSMUST00000139253 ENSMUSP00000123181 TRANSLATION protein_coding - CCDS16645.1 1 59.0 0.0 1.6 24.2 47.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000074884 Serf2 ENSMUST00000134412 - NO_TRANSLATION retained_intron ENSMUSG00000074884 Serf2 ENSMUST00000099475 ENSMUSP00000097074 TRANSLATION protein_coding - CCDS71126.1 2 133.0 0.0 1.0 11.1 47.6 0.0 -4,-5 0.5767 2 11.49 MINOR ENSMUSG00000027257 Pacsin3 ENSMUST00000128684 ENSMUSP00000118915 TRANSLATION protein_coding start - 3 133.0 0.0 1.95 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027257 Pacsin3 ENSMUST00000131711 ENSMUSP00000117214 TRANSLATION protein_coding stop - 3 114.0 6.0 2.83 0.0 64.6 0.0 -4,-5 0.0005 5 -2.0 MINOR ENSMUSG00000027257 Pacsin3 ENSMUST00000144394 ENSMUSP00000121297 TRANSLATION protein_coding stop - 2 95.0 6.0 2.33 0.0 63.6 0.0 -4,-5 0.0005 4 -2.0 MINOR ENSMUSG00000027257 Pacsin3 ENSMUST00000154959 ENSMUSP00000122769 TRANSLATION protein_coding stop - 2 64.0 0.0 1.25 0.0 44.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027257 Pacsin3 ENSMUST00000126754 - NO_TRANSLATION retained_intron ENSMUSG00000027257 Pacsin3 ENSMUST00000111349 ENSMUSP00000106981 TRANSLATION protein_coding - CCDS16429.1 1 424.0 6.0 10.21 12.5 118.1 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000027257 Pacsin3 ENSMUST00000141313 - NO_TRANSLATION retained_intron ENSMUSG00000027257 Pacsin3 ENSMUST00000138470 ENSMUSP00000117230 TRANSLATION protein_coding stop - 2 178.0 6.0 5.16 0.0 64.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027257 Pacsin3 ENSMUST00000134699 ENSMUSP00000115046 TRANSLATION protein_coding stop - 5 168.0 6.0 4.58 0.0 64.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027257 Pacsin3 ENSMUST00000028694 ENSMUSP00000028694 TRANSLATION protein_coding - CCDS16429.1 1 424.0 6.0 10.21 12.5 118.1 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000027257 Pacsin3 ENSMUST00000124658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027257 Pacsin3 ENSMUST00000059566 ENSMUSP00000054391 TRANSLATION protein_coding - CCDS16429.1 1 424.0 6.0 10.21 12.5 118.1 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000027257 Pacsin3 ENSMUST00000156919 ENSMUSP00000122779 TRANSLATION protein_coding stop - 5 125.0 6.0 3.16 0.0 64.6 0.0 -4,-5 0.0005 5 -2.0 MINOR ENSMUSG00000027257 Pacsin3 ENSMUST00000143883 - NO_TRANSLATION retained_intron ENSMUSG00000027257 Pacsin3 ENSMUST00000168916 ENSMUSP00000129175 TRANSLATION protein_coding - CCDS16429.1 1 424.0 6.0 10.21 12.5 118.1 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000039660 Spout1 ENSMUST00000142669 - NO_TRANSLATION retained_intron ENSMUSG00000039660 Spout1 ENSMUST00000127309 - NO_TRANSLATION retained_intron ENSMUSG00000039660 Spout1 ENSMUST00000136630 - NO_TRANSLATION retained_intron ENSMUSG00000039660 Spout1 ENSMUST00000144093 - NO_TRANSLATION retained_intron ENSMUSG00000039660 Spout1 ENSMUST00000137656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039660 Spout1 ENSMUST00000146466 - NO_TRANSLATION retained_intron ENSMUSG00000039660 Spout1 ENSMUST00000100220 ENSMUSP00000097793 TRANSLATION protein_coding - CCDS15873.2 1 385.0 0.0 6.875 1.1 368.0 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000039660 Spout1 ENSMUST00000125141 - NO_TRANSLATION retained_intron ENSMUSG00000082980 Or4x13 ENSMUST00000216111 ENSMUSP00000148849 TRANSLATION protein_coding - - 5 309.0 0.0 1.0 13.8 168.3 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000082980 Or4x13 ENSMUST00000120681 ENSMUSP00000151089 TRANSLATION protein_coding - - - 309.0 0.0 1.0 13.8 168.3 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095199 Zfp967 ENSMUST00000108997 ENSMUSP00000104625 TRANSLATION protein_coding - CCDS57199.1 3 138.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0392 - 0.702 MINOR ENSMUSG00000095199 Zfp967 ENSMUST00000238420 ENSMUSP00000158700 TRANSLATION protein_coding - - - 88.0 0.0 1.75 0.0 73.1 0.0 -4,-6 0.0 - 3.0 MINOR ENSMUSG00000095199 Zfp967 ENSMUST00000238365 ENSMUSP00000158800 TRANSLATION protein_coding - - - 83.0 0.0 1.75 0.0 73.1 0.0 -4,-6 0.0 - 3.0 MINOR ENSMUSG00000095199 Zfp967 ENSMUST00000238250 ENSMUSP00000158730 TRANSLATION protein_coding - - - 90.0 0.0 1.75 0.0 73.1 0.0 -4,-6 0.0 - 3.0 MINOR ENSMUSG00000095199 Zfp967 ENSMUST00000238206 ENSMUSP00000158763 TRANSLATION protein_coding stop - - 95.0 0.0 2.25 0.0 73.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000095199 Zfp967 ENSMUST00000238585 ENSMUSP00000158586 TRANSLATION protein_coding - - - 89.0 0.0 1.75 0.0 73.1 0.0 -4,-6 0.0 - 3.0 MINOR ENSMUSG00000095199 Zfp967 ENSMUST00000178443 ENSMUSP00000136521 TRANSLATION protein_coding - CCDS57198.1 2 485.0 53.0 3.25 0.0 316.6 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000026940 Ccdc183 ENSMUST00000129520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026940 Ccdc183 ENSMUST00000028309 ENSMUSP00000028309 TRANSLATION protein_coding - CCDS50533.1 5 534.0 0.0 0.0 0.7 0.0 0.0 -4,-5 0.9145 1 0.0 PRINCIPAL:1 ENSMUSG00000000308 Ckmt1 ENSMUST00000145380 - NO_TRANSLATION retained_intron ENSMUSG00000000308 Ckmt1 ENSMUST00000128612 ENSMUSP00000115610 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 0.4 0.0 0.0 0.0 -3,1 0.0004 - -2.0 MINOR ENSMUSG00000000308 Ckmt1 ENSMUST00000000317 ENSMUSP00000000317 TRANSLATION protein_coding - CCDS16640.1 1 418.0 22.0 8.98 28.8 381.4 0.0 -2,1 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000000308 Ckmt1 ENSMUST00000125812 ENSMUSP00000115501 TRANSLATION protein_coding stop - 5 149.0 2.0 2.48 0.0 104.9 0.0 -2,1 0.0 7 -2.0 MINOR ENSMUSG00000000308 Ckmt1 ENSMUST00000126130 ENSMUSP00000117463 TRANSLATION nonsense_mediated_decay - - 5 59.0 0.0 0.4 0.0 0.0 0.0 -2,1 0.0004 - -2.0 MINOR ENSMUSG00000000308 Ckmt1 ENSMUST00000125221 ENSMUSP00000121930 TRANSLATION protein_coding stop - 5 117.0 2.0 1.4 0.0 77.9 0.0 -2,1 0.0 7 -2.0 MINOR ENSMUSG00000000308 Ckmt1 ENSMUST00000150271 ENSMUSP00000120507 TRANSLATION protein_coding stop - 5 251.0 7.0 4.98 0.0 157.4 0.0 -2,1 0.0004 14 -2.0 MINOR ENSMUSG00000000308 Ckmt1 ENSMUST00000153040 - NO_TRANSLATION retained_intron ENSMUSG00000000308 Ckmt1 ENSMUST00000129130 ENSMUSP00000123130 TRANSLATION protein_coding stop - 5 204.0 5.0 3.23 0.0 104.9 0.0 -3,1 0.0 7 -2.0 MINOR ENSMUSG00000000308 Ckmt1 ENSMUST00000078222 ENSMUSP00000077349 TRANSLATION protein_coding - CCDS16640.1 1 418.0 22.0 8.98 28.8 381.4 0.0 -2,1 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000075086 Or4a69 ENSMUST00000214743 ENSMUSP00000149997 TRANSLATION protein_coding - CCDS16381.1 5 314.0 0.0 1.0 3.9 157.5 4.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075086 Or4a69 ENSMUST00000099778 ENSMUSP00000097366 TRANSLATION protein_coding - CCDS16381.1 - 314.0 0.0 1.0 3.9 157.5 4.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075086 Or4a69 ENSMUST00000215055 ENSMUSP00000149914 TRANSLATION protein_coding - CCDS16381.1 5 314.0 0.0 1.0 3.9 157.5 4.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051154 Commd3 ENSMUST00000137817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051154 Commd3 ENSMUST00000151230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051154 Commd3 ENSMUST00000154519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051154 Commd3 ENSMUST00000150590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051154 Commd3 ENSMUST00000061158 ENSMUSP00000049882 TRANSLATION protein_coding - CCDS15710.1 1 195.0 0.0 1.2 29.0 67.2 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000051154 Commd3 ENSMUST00000131369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051154 Commd3 ENSMUST00000130537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051154 Commd3 ENSMUST00000133828 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051154 Commd3 ENSMUST00000133685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051154 Commd3 ENSMUST00000137317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051154 Commd3 ENSMUST00000151974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061531 Tmem236 ENSMUST00000077517 ENSMUSP00000076722 TRANSLATION protein_coding - CCDS38049.1 1 344.0 0.0 0.0 8.9 0.0 0.0 -2,-5 1.0 3 3.0 PRINCIPAL:1 ENSMUSG00000027560 Dok5 ENSMUST00000029075 ENSMUSP00000029075 TRANSLATION protein_coding - CCDS17125.1 1 306.0 0.0 2.0 20.9 99.0 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000078897 Gm4724 ENSMUST00000109046 ENSMUSP00000104674 TRANSLATION protein_coding - CCDS57193.1 5 498.0 59.0 2.3 0.1 394.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078897 Gm4724 ENSMUST00000109045 ENSMUSP00000104673 TRANSLATION protein_coding - CCDS57193.1 2 498.0 59.0 2.3 0.1 394.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078897 Gm4724 ENSMUST00000152941 ENSMUSP00000121866 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078897 Gm4724 ENSMUST00000153210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075204 Or5al5 ENSMUST00000216566 ENSMUSP00000149830 TRANSLATION protein_coding - CCDS16238.1 5 319.0 0.0 1.0 4.0 169.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075204 Or5al5 ENSMUST00000214364 ENSMUSP00000150584 TRANSLATION protein_coding - CCDS16238.1 5 319.0 0.0 1.0 4.0 169.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075204 Or5al5 ENSMUST00000099910 ENSMUSP00000097494 TRANSLATION protein_coding - CCDS16238.1 - 319.0 0.0 1.0 4.0 169.2 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027078 Ube2l6 ENSMUST00000102642 ENSMUSP00000099702 TRANSLATION protein_coding - CCDS16194.2 1 153.0 0.0 3.83 28.9 124.3 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027078 Ube2l6 ENSMUST00000150325 ENSMUSP00000119507 TRANSLATION protein_coding stop - 3 89.0 0.0 0.83 0.0 0.0 0.0 -4,-6 0.0001 - -2.0 MINOR ENSMUSG00000027078 Ube2l6 ENSMUST00000159150 - NO_TRANSLATION retained_intron ENSMUSG00000027078 Ube2l6 ENSMUST00000154709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034059 Ypel4 ENSMUST00000151647 - NO_TRANSLATION retained_intron ENSMUSG00000034059 Ypel4 ENSMUST00000090729 ENSMUSP00000088231 TRANSLATION protein_coding - CCDS16192.1 1 127.0 4.0 3.13 18.0 50.9 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000034059 Ypel4 ENSMUST00000151399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034059 Ypel4 ENSMUST00000111643 ENSMUSP00000107270 TRANSLATION nonsense_mediated_decay - - 5 55.0 2.0 0.8 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000034059 Ypel4 ENSMUST00000238573 ENSMUSP00000158708 TRANSLATION protein_coding - - - 158.0 4.0 3.13 0.0 50.9 0.0 -4,-7 0.0101 3 16.0 MINOR ENSMUSG00000027488 Snta1 ENSMUST00000133018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027488 Snta1 ENSMUST00000109728 ENSMUSP00000105350 TRANSLATION protein_coding - CCDS50763.1 1 499.0 0.0 4.0 7.3 97.5 0.0 -4,0 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000027488 Snta1 ENSMUST00000028991 ENSMUSP00000028991 TRANSLATION protein_coding - - 1 503.0 0.0 4.0 0.4 93.6 0.0 -4,0 0.1588 13 11.76 MINOR ENSMUSG00000050530 Fam171a1 ENSMUST00000072955 ENSMUSP00000072724 TRANSLATION protein_coding - CCDS79727.1 1 767.0 0.0 0.0 2.3 1085.1 1.0 -4,-7 1.0 12 1.0 MINOR ENSMUSG00000050530 Fam171a1 ENSMUST00000091505 ENSMUSP00000089086 TRANSLATION protein_coding - - 1 294.0 0.0 0.0 0.3 457.4 0.0 1,-2 0.037 4 0.0 MINOR ENSMUSG00000050530 Fam171a1 ENSMUST00000062934 ENSMUSP00000053619 TRANSLATION protein_coding - CCDS84464.1 1 887.0 0.0 0.0 0.0 1260.6 1.0 -4,-5 0.4532 15 0.0 ALTERNATIVE:2 ENSMUSG00000050530 Fam171a1 ENSMUST00000115099 ENSMUSP00000110751 TRANSLATION protein_coding - CCDS38036.1 1 892.0 0.0 0.0 0.0 1260.6 1.0 1,-2 0.5578 16 0.0 PRINCIPAL:3 ENSMUSG00000027523 Gnas ENSMUST00000124935 ENSMUSP00000158709 TRANSLATION protein_coding stop - 3 140.0 2.0 3.8 0.0 75.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000154658 ENSMUSP00000158758 TRANSLATION nonsense_mediated_decay - - 1 827.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0437 1 -2.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000180362 ENSMUSP00000136180 TRANSLATION protein_coding - CCDS17149.1 5 253.0 0.0 0.0 0.1 511.4 0.0 -4,-1 0.1855 3 2.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000087877 ENSMUSP00000085185 TRANSLATION protein_coding - CCDS38355.1 1 876.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1003 1 0.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000148640 ENSMUSP00000158579 TRANSLATION protein_coding stop - 5 153.0 6.0 4.3 0.0 93.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000133356 ENSMUSP00000158849 TRANSLATION protein_coding - - 3 32.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000238660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027523 Gnas ENSMUST00000238525 - NO_TRANSLATION retained_intron ENSMUSG00000027523 Gnas ENSMUST00000185956 ENSMUSP00000140174 TRANSLATION protein_coding - CCDS17151.1 1 1133.0 23.0 8.71 0.0 347.2 0.0 -4,-5 0.0676 9 9.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000109085 ENSMUSP00000104713 TRANSLATION protein_coding - CCDS38357.1 1 380.0 23.0 9.91 29.8 360.2 0.0 -4,-5 1.0 9 15.4 PRINCIPAL:4 ENSMUSG00000027523 Gnas ENSMUST00000156623 ENSMUSP00000158707 TRANSLATION protein_coding - - 1 335.0 16.0 8.38 10.0 301.6 0.0 -4,-5 0.2382 9 4.92 MINOR ENSMUSG00000027523 Gnas ENSMUST00000109083 ENSMUSP00000104711 TRANSLATION protein_coding - - 2 91.0 7.0 2.63 2.0 49.7 0.0 -4,-5 0.0448 1 0.14 MINOR ENSMUSG00000027523 Gnas ENSMUST00000109087 ENSMUSP00000104715 TRANSLATION protein_coding - CCDS38356.1 1 394.0 23.0 10.21 5.7 353.6 0.0 -4,-5 0.4183 9 12.652 MINOR ENSMUSG00000027523 Gnas ENSMUST00000131125 - NO_TRANSLATION retained_intron ENSMUSG00000027523 Gnas ENSMUST00000087871 ENSMUSP00000085179 TRANSLATION protein_coding - CCDS38356.1 1 394.0 23.0 10.21 5.7 353.6 0.0 -4,-5 0.4183 9 12.652 MINOR ENSMUSG00000027523 Gnas ENSMUST00000149016 ENSMUSP00000158589 TRANSLATION protein_coding - - 1 277.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0008 - 0.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000129534 - NO_TRANSLATION retained_intron ENSMUSG00000027523 Gnas ENSMUST00000109088 ENSMUSP00000104716 TRANSLATION protein_coding - CCDS50817.1 1 725.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0679 - 0.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000186907 ENSMUSP00000139839 TRANSLATION protein_coding - CCDS50817.1 1 725.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0679 - 0.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000130940 ENSMUSP00000118210 TRANSLATION protein_coding start - 5 59.0 0.0 0.0 0.0 95.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000238267 ENSMUSP00000158626 TRANSLATION protein_coding - - - 237.0 15.0 5.23 0.0 242.9 0.0 -4,-5 0.0 6 0.666 MINOR ENSMUSG00000027523 Gnas ENSMUST00000109084 ENSMUSP00000104712 TRANSLATION protein_coding - - 1 379.0 23.0 9.91 29.8 363.3 0.0 -4,-5 0.8686 9 15.4 ALTERNATIVE:1 ENSMUSG00000027523 Gnas ENSMUST00000080493 ENSMUSP00000079341 TRANSLATION protein_coding - CCDS17151.1 1 1133.0 23.0 8.71 0.0 347.2 0.0 -4,-5 0.0676 9 9.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000087876 ENSMUSP00000085184 TRANSLATION protein_coding - CCDS38354.1 1 1119.0 23.0 8.41 0.0 353.8 0.0 -4,-5 0.0664 9 8.4 MINOR ENSMUSG00000027523 Gnas ENSMUST00000238318 ENSMUSP00000158766 TRANSLATION nonsense_mediated_decay - - - 45.0 0.0 1.132 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000109096 ENSMUSP00000104724 TRANSLATION protein_coding - CCDS17149.1 1 253.0 0.0 0.0 0.1 511.4 0.0 -4,-1 0.1855 3 2.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000109095 ENSMUSP00000104723 TRANSLATION protein_coding - CCDS17149.1 1 253.0 0.0 0.0 0.1 511.4 0.0 -4,-1 0.1855 3 2.0 MINOR ENSMUSG00000027523 Gnas ENSMUST00000130761 ENSMUSP00000122230 TRANSLATION protein_coding start - 3 25.0 0.0 0.0 0.0 35.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038671 Arfrp1 ENSMUST00000048269 - NO_TRANSLATION retained_intron ENSMUSG00000038671 Arfrp1 ENSMUST00000152580 - NO_TRANSLATION retained_intron ENSMUSG00000038671 Arfrp1 ENSMUST00000130346 - NO_TRANSLATION retained_intron ENSMUSG00000038671 Arfrp1 ENSMUST00000108808 ENSMUSP00000104436 TRANSLATION protein_coding - CCDS17209.1 1 201.0 17.0 6.08 29.6 155.8 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000038671 Arfrp1 ENSMUST00000184859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038671 Arfrp1 ENSMUST00000183499 ENSMUSP00000138941 TRANSLATION nonsense_mediated_decay - - 5 62.0 8.0 2.0 0.0 29.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038671 Arfrp1 ENSMUST00000152334 - NO_TRANSLATION retained_intron ENSMUSG00000038671 Arfrp1 ENSMUST00000145358 - NO_TRANSLATION retained_intron ENSMUSG00000038671 Arfrp1 ENSMUST00000127988 ENSMUSP00000122066 TRANSLATION protein_coding - CCDS17209.1 1 201.0 17.0 6.08 29.6 155.8 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000038671 Arfrp1 ENSMUST00000139368 - NO_TRANSLATION retained_intron ENSMUSG00000038671 Arfrp1 ENSMUST00000170190 ENSMUSP00000126387 TRANSLATION protein_coding - CCDS50853.1 5 154.0 10.0 4.58 2.1 125.8 0.0 -4,-5 0.0335 3 8.684 MINOR ENSMUSG00000038671 Arfrp1 ENSMUST00000185118 ENSMUSP00000139211 TRANSLATION nonsense_mediated_decay - - 1 121.0 10.0 3.5 1.7 101.0 0.0 -4,-5 0.0257 1 -2.0 MINOR ENSMUSG00000027466 Rbck1 ENSMUST00000028964 ENSMUSP00000028964 TRANSLATION protein_coding - CCDS38273.1 1 508.0 19.0 6.2985 11.4 65.6 0.0 -4,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000027466 Rbck1 ENSMUST00000128645 - NO_TRANSLATION retained_intron ENSMUSG00000027466 Rbck1 ENSMUST00000109847 ENSMUSP00000105473 TRANSLATION protein_coding - CCDS38273.1 1 508.0 19.0 6.2985 11.4 65.6 0.0 -4,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000027466 Rbck1 ENSMUST00000130165 - NO_TRANSLATION retained_intron ENSMUSG00000027466 Rbck1 ENSMUST00000144865 ENSMUSP00000118592 TRANSLATION protein_coding start/stop - 5 233.0 14.0 1.666 0.0 65.6 0.0 -4,-5 0.0135 2 -2.0 MINOR ENSMUSG00000027466 Rbck1 ENSMUST00000131889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027466 Rbck1 ENSMUST00000145889 - NO_TRANSLATION retained_intron ENSMUSG00000027466 Rbck1 ENSMUST00000129590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040132 Semg1 ENSMUST00000044953 ENSMUSP00000042389 TRANSLATION protein_coding - CCDS17027.1 1 375.0 0.0 0.0 0.0 141.5 0.0 3,-2 1.0 23 6.0 PRINCIPAL:1 ENSMUSG00000040132 Semg1 ENSMUST00000109374 ENSMUSP00000104999 TRANSLATION protein_coding - CCDS17027.1 1 375.0 0.0 0.0 0.0 141.5 0.0 3,-2 1.0 23 6.0 PRINCIPAL:1 ENSMUSG00000036805 Noxa1 ENSMUST00000114373 ENSMUSP00000110014 TRANSLATION protein_coding - CCDS50524.1 1 436.0 0.0 4.33 0.3 64.6 0.0 -4,-5 0.4212 2 8.0 ALTERNATIVE:2 ENSMUSG00000036805 Noxa1 ENSMUST00000044018 ENSMUSP00000037423 TRANSLATION protein_coding - CCDS15749.1 1 444.0 0.0 4.33 0.4 64.6 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000026790 Odf2 ENSMUST00000129960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026790 Odf2 ENSMUST00000113755 ENSMUSP00000109384 TRANSLATION protein_coding - CCDS50557.1 1 652.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1422 28 0.0 MINOR ENSMUSG00000026790 Odf2 ENSMUST00000184845 ENSMUSP00000139390 TRANSLATION nonsense_mediated_decay - - 5 680.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0665 28 -2.0 MINOR ENSMUSG00000026790 Odf2 ENSMUST00000113757 ENSMUSP00000109386 TRANSLATION protein_coding - - 5 806.0 0.0 0.0 5.7 0.0 0.0 -4,-5 0.738 31 1.62 ALTERNATIVE:1 ENSMUSG00000026790 Odf2 ENSMUST00000123335 ENSMUSP00000121207 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.009 - -2.0 MINOR ENSMUSG00000026790 Odf2 ENSMUST00000113759 ENSMUSP00000109388 TRANSLATION protein_coding - CCDS50555.1 1 826.0 0.0 0.0 6.8 0.0 0.0 -4,-5 1.0 32 2.0 ALTERNATIVE:1 ENSMUSG00000026790 Odf2 ENSMUST00000113756 ENSMUSP00000109385 TRANSLATION protein_coding - CCDS50556.1 1 825.0 0.0 0.0 6.8 0.0 0.0 -4,-5 1.0 32 2.0 ALTERNATIVE:1 ENSMUSG00000026790 Odf2 ENSMUST00000153216 - NO_TRANSLATION retained_intron ENSMUSG00000026790 Odf2 ENSMUST00000113763 ENSMUSP00000109392 TRANSLATION protein_coding - CCDS15861.1 5 638.0 0.0 0.0 2.2 0.0 0.0 -4,-7 0.2922 29 0.414 MINOR ENSMUSG00000026790 Odf2 ENSMUST00000131165 - NO_TRANSLATION retained_intron ENSMUSG00000026790 Odf2 ENSMUST00000137558 ENSMUSP00000117887 TRANSLATION protein_coding start/stop - 3 271.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0378 9 -2.0 MINOR ENSMUSG00000026790 Odf2 ENSMUST00000152932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026790 Odf2 ENSMUST00000028128 ENSMUSP00000028128 TRANSLATION protein_coding - CCDS15861.1 1 638.0 0.0 0.0 2.2 0.0 0.0 -4,-7 0.2922 29 0.414 MINOR ENSMUSG00000026790 Odf2 ENSMUST00000148883 - NO_TRANSLATION retained_intron ENSMUSG00000026790 Odf2 ENSMUST00000152503 - NO_TRANSLATION retained_intron ENSMUSG00000026790 Odf2 ENSMUST00000133233 ENSMUSP00000117628 TRANSLATION protein_coding stop - 2 138.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0093 2 -2.0 MINOR ENSMUSG00000026790 Odf2 ENSMUST00000113767 ENSMUSP00000109396 TRANSLATION protein_coding - CCDS50554.1 1 701.0 0.0 0.0 1.3 0.0 0.0 -4,-2 0.3142 31 0.104 MINOR ENSMUSG00000026790 Odf2 ENSMUST00000113762 ENSMUSP00000109391 TRANSLATION protein_coding - - 5 657.0 0.0 0.0 1.1 0.0 0.0 -4,-2 0.1625 30 0.034 MINOR ENSMUSG00000026790 Odf2 ENSMUST00000126103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026790 Odf2 ENSMUST00000150827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026790 Odf2 ENSMUST00000152026 - NO_TRANSLATION retained_intron ENSMUSG00000026790 Odf2 ENSMUST00000130899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026790 Odf2 ENSMUST00000113764 ENSMUSP00000109393 TRANSLATION protein_coding - CCDS15861.1 5 638.0 0.0 0.0 2.2 0.0 0.0 -4,-7 0.2922 29 0.414 MINOR ENSMUSG00000026790 Odf2 ENSMUST00000113765 ENSMUSP00000109394 TRANSLATION protein_coding - - 5 830.0 0.0 0.0 6.8 0.0 0.0 -4,-2 0.8252 34 2.0 PRINCIPAL:3 ENSMUSG00000026790 Odf2 ENSMUST00000046571 ENSMUSP00000049272 TRANSLATION protein_coding - CCDS50556.1 2 825.0 0.0 0.0 6.8 0.0 0.0 -4,-5 1.0 32 2.0 ALTERNATIVE:1 ENSMUSG00000057738 Sptan1 ENSMUST00000113717 ENSMUSP00000109346 TRANSLATION protein_coding - CCDS50559.1 1 2457.0 5.0 28.892 7.8 1847.8 0.0 -4,-5 0.8581 175 13.763 MINOR ENSMUSG00000057738 Sptan1 ENSMUST00000129241 ENSMUSP00000121116 TRANSLATION protein_coding - CCDS38094.2 5 2498.0 5.0 28.517 11.7 1822.4 0.0 -4,-5 0.9337 175 13.397 MINOR ENSMUSG00000057738 Sptan1 ENSMUST00000201758 - NO_TRANSLATION retained_intron ENSMUSG00000057738 Sptan1 ENSMUST00000100225 ENSMUSP00000097797 TRANSLATION protein_coding - CCDS50558.1 1 2477.0 5.0 29.267 12.9 1847.8 0.0 -4,-5 1.0 174 15.8 PRINCIPAL:3 ENSMUSG00000057738 Sptan1 ENSMUST00000202844 - NO_TRANSLATION retained_intron ENSMUSG00000057738 Sptan1 ENSMUST00000143918 - NO_TRANSLATION retained_intron ENSMUSG00000057738 Sptan1 ENSMUST00000113741 ENSMUSP00000109370 TRANSLATION protein_coding stop - 5 219.0 0.0 3.8 0.0 144.7 0.0 -4,-7 0.0 11 -2.0 MINOR ENSMUSG00000057738 Sptan1 ENSMUST00000149038 - NO_TRANSLATION retained_intron ENSMUSG00000057738 Sptan1 ENSMUST00000131827 - NO_TRANSLATION retained_intron ENSMUSG00000057738 Sptan1 ENSMUST00000113719 ENSMUSP00000109348 TRANSLATION protein_coding - - 5 2478.0 5.0 28.142 8.6 1822.4 0.0 -4,-5 0.7121 176 11.867 MINOR ENSMUSG00000057738 Sptan1 ENSMUST00000238871 ENSMUSP00000159182 TRANSLATION protein_coding start/stop - - 112.0 0.0 1.25 0.0 27.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000057738 Sptan1 ENSMUST00000152453 - NO_TRANSLATION retained_intron ENSMUSG00000057738 Sptan1 ENSMUST00000149846 - NO_TRANSLATION retained_intron ENSMUSG00000057738 Sptan1 ENSMUST00000095083 ENSMUSP00000092697 TRANSLATION protein_coding - - 5 2472.0 5.0 29.267 10.9 1860.4 0.0 -4,-5 0.8666 173 15.496 ALTERNATIVE:1 ENSMUSG00000057738 Sptan1 ENSMUST00000124494 - NO_TRANSLATION retained_intron ENSMUSG00000057738 Sptan1 ENSMUST00000046257 ENSMUSP00000047792 TRANSLATION protein_coding - - 5 2452.0 5.0 28.892 7.8 1860.4 0.0 -4,-5 0.7577 174 13.963 MINOR ENSMUSG00000057738 Sptan1 ENSMUST00000202286 - NO_TRANSLATION retained_intron ENSMUSG00000040310 Alx4 ENSMUST00000111254 ENSMUSP00000106885 TRANSLATION protein_coding - - 1 325.0 0.0 1.6 0.0 87.0 0.0 -4,-5 0.0295 1 9.744 MINOR ENSMUSG00000040310 Alx4 ENSMUST00000042078 ENSMUSP00000047962 TRANSLATION protein_coding - CCDS16455.1 1 399.0 0.0 1.6 5.7 124.6 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000039804 Ncoa5 ENSMUST00000123347 - NO_TRANSLATION retained_intron ENSMUSG00000039804 Ncoa5 ENSMUST00000040381 ENSMUSP00000046388 TRANSLATION protein_coding - CCDS17068.1 1 579.0 0.0 2.4 9.9 0.0 0.0 -4,-7 1.0 17 9.0 PRINCIPAL:2 ENSMUSG00000039804 Ncoa5 ENSMUST00000121377 ENSMUSP00000113872 TRANSLATION protein_coding - - 1 299.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0149 7 1.998 MINOR ENSMUSG00000039804 Ncoa5 ENSMUST00000126685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039804 Ncoa5 ENSMUST00000141663 - NO_TRANSLATION retained_intron ENSMUSG00000039804 Ncoa5 ENSMUST00000127545 - NO_TRANSLATION retained_intron ENSMUSG00000039804 Ncoa5 ENSMUST00000122070 ENSMUSP00000113166 TRANSLATION protein_coding - - 5 406.0 0.0 2.4 8.3 0.0 0.0 -4,-7 0.706 14 8.46 ALTERNATIVE:1 ENSMUSG00000039804 Ncoa5 ENSMUST00000153905 ENSMUSP00000116778 TRANSLATION protein_coding stop - 2 68.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0151 2 -2.0 MINOR ENSMUSG00000001864 Aif1l ENSMUST00000001920 ENSMUSP00000001920 TRANSLATION protein_coding - CCDS15904.1 1 150.0 4.0 4.046 14.2 0.0 0.0 -4,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000001864 Aif1l ENSMUST00000148056 ENSMUSP00000141549 TRANSLATION protein_coding - - 5 136.0 0.0 3.546 0.0 0.0 0.0 -4,-2 0.021 4 4.998 MINOR ENSMUSG00000001864 Aif1l ENSMUST00000128271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001864 Aif1l ENSMUST00000151276 ENSMUSP00000141456 TRANSLATION protein_coding stop - 5 37.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0034 1 -2.0 MINOR ENSMUSG00000001864 Aif1l ENSMUST00000138833 - NO_TRANSLATION retained_intron ENSMUSG00000001864 Aif1l ENSMUST00000145137 - NO_TRANSLATION retained_intron ENSMUSG00000001864 Aif1l ENSMUST00000156564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001864 Aif1l ENSMUST00000156743 - NO_TRANSLATION retained_intron ENSMUSG00000001864 Aif1l ENSMUST00000125457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001864 Aif1l ENSMUST00000140649 - NO_TRANSLATION retained_intron ENSMUSG00000026857 Ntmt1 ENSMUST00000128509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026857 Ntmt1 ENSMUST00000138889 ENSMUSP00000141905 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 1.0 0.0 29.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026857 Ntmt1 ENSMUST00000041830 ENSMUSP00000035303 TRANSLATION protein_coding - CCDS15886.1 1 223.0 20.0 5.83 31.9 322.1 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000026857 Ntmt1 ENSMUST00000129712 ENSMUSP00000141222 TRANSLATION nonsense_mediated_decay - - 3 70.0 0.0 1.0 0.0 29.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026857 Ntmt1 ENSMUST00000152374 ENSMUSP00000116760 TRANSLATION protein_coding stop - 5 146.0 20.0 4.83 0.0 208.9 0.0 -4,-5 0.0002 2 -2.0 MINOR ENSMUSG00000026857 Ntmt1 ENSMUST00000143970 ENSMUSP00000141900 TRANSLATION protein_coding start - 3 144.0 20.0 4.5 0.0 192.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026857 Ntmt1 ENSMUST00000126037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026857 Ntmt1 ENSMUST00000128303 ENSMUSP00000123140 TRANSLATION protein_coding stop - 3 78.0 7.0 2.5 0.0 96.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026857 Ntmt1 ENSMUST00000127566 ENSMUSP00000142189 TRANSLATION protein_coding stop - 5 118.0 11.0 3.75 0.0 147.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036617 Etl4 ENSMUST00000125556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036617 Etl4 ENSMUST00000125772 - NO_TRANSLATION retained_intron ENSMUSG00000036617 Etl4 ENSMUST00000139531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036617 Etl4 ENSMUST00000131714 ENSMUSP00000116637 TRANSLATION protein_coding stop - 5 173.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0344 4 -2.0 MINOR ENSMUSG00000036617 Etl4 ENSMUST00000136870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036617 Etl4 ENSMUST00000114610 ENSMUSP00000110257 TRANSLATION protein_coding - - 1 480.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0782 15 6.0 ALTERNATIVE:2 ENSMUSG00000036617 Etl4 ENSMUST00000066509 ENSMUSP00000066170 TRANSLATION protein_coding - - 5 1946.0 0.0 1.2 0.7 0.0 0.0 -4,-5 0.2716 60 6.0 ALTERNATIVE:2 ENSMUSG00000036617 Etl4 ENSMUST00000129278 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036617 Etl4 ENSMUST00000146881 ENSMUSP00000119778 TRANSLATION protein_coding stop - 2 220.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0271 4 -2.0 MINOR ENSMUSG00000036617 Etl4 ENSMUST00000146488 - NO_TRANSLATION retained_intron ENSMUSG00000036617 Etl4 ENSMUST00000238889 ENSMUSP00000159127 TRANSLATION protein_coding stop - - 277.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0209 8 -2.0 MINOR ENSMUSG00000036617 Etl4 ENSMUST00000114608 ENSMUSP00000110255 TRANSLATION protein_coding - - 5 1629.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1921 50 0.0 MINOR ENSMUSG00000036617 Etl4 ENSMUST00000114614 ENSMUSP00000110261 TRANSLATION protein_coding - CCDS50510.1 1 1341.0 0.0 1.2 0.7 0.0 0.0 -4,-5 0.6576 41 6.0 ALTERNATIVE:2 ENSMUSG00000036617 Etl4 ENSMUST00000114627 ENSMUSP00000110274 TRANSLATION protein_coding - CCDS38053.1 5 1997.0 0.0 1.2 0.0 0.0 0.0 -3,-6 0.5448 60 6.0 ALTERNATIVE:2 ENSMUSG00000036617 Etl4 ENSMUST00000114607 ENSMUSP00000110254 TRANSLATION protein_coding - - 5 934.0 0.0 0.0 0.7 0.0 0.0 -4,-7 0.0863 29 0.0 MINOR ENSMUSG00000036617 Etl4 ENSMUST00000114606 ENSMUSP00000110253 TRANSLATION protein_coding - - 5 908.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0863 28 0.0 MINOR ENSMUSG00000036617 Etl4 ENSMUST00000156587 - NO_TRANSLATION retained_intron ENSMUSG00000036617 Etl4 ENSMUST00000045555 ENSMUSP00000041431 TRANSLATION protein_coding - CCDS50511.1 1 1352.0 0.0 1.2 0.7 0.0 0.0 -4,-5 1.0 41 6.0 PRINCIPAL:2 ENSMUSG00000036617 Etl4 ENSMUST00000123383 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036617 Etl4 ENSMUST00000146613 - NO_TRANSLATION retained_intron ENSMUSG00000036617 Etl4 ENSMUST00000114604 ENSMUSP00000110251 TRANSLATION protein_coding - CCDS50509.1 1 1347.0 0.0 1.2 0.7 0.0 0.0 -4,-5 0.702 42 6.0 ALTERNATIVE:2 ENSMUSG00000075097 Or4c121 ENSMUST00000215562 ENSMUSP00000148951 TRANSLATION protein_coding - CCDS16370.1 5 310.0 0.0 1.0 6.8 158.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075097 Or4c121 ENSMUST00000214709 ENSMUSP00000149647 TRANSLATION protein_coding - CCDS16370.1 3 310.0 0.0 1.0 6.8 158.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075097 Or4c121 ENSMUST00000220416 ENSMUSP00000151855 TRANSLATION protein_coding - CCDS16370.1 5 310.0 0.0 1.0 6.8 158.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075097 Or4c121 ENSMUST00000216445 ENSMUSP00000150215 TRANSLATION protein_coding - CCDS16370.1 5 310.0 0.0 1.0 6.8 158.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075097 Or4c121 ENSMUST00000217601 ENSMUSP00000151063 TRANSLATION protein_coding - CCDS16370.1 5 310.0 0.0 1.0 6.8 158.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075097 Or4c121 ENSMUST00000099790 ENSMUSP00000097378 TRANSLATION protein_coding - CCDS16370.1 - 310.0 0.0 1.0 6.8 158.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075097 Or4c121 ENSMUST00000215987 ENSMUSP00000148955 TRANSLATION protein_coding - CCDS16370.1 5 310.0 0.0 1.0 6.8 158.7 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075270 Pde11a ENSMUST00000124825 ENSMUSP00000117451 TRANSLATION protein_coding start - 1 72.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000075270 Pde11a ENSMUST00000144892 ENSMUSP00000115662 TRANSLATION protein_coding start - 1 444.0 6.0 8.915 0.0 263.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000075270 Pde11a ENSMUST00000099992 ENSMUSP00000097572 TRANSLATION protein_coding - CCDS38152.1 1 933.0 17.0 12.65 4.4 397.8 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000009555 Cdk9 ENSMUST00000125058 - NO_TRANSLATION retained_intron ENSMUSG00000009555 Cdk9 ENSMUST00000009699 ENSMUSP00000009699 TRANSLATION protein_coding - CCDS15927.1 1 372.0 18.0 7.66 19.5 236.0 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000009555 Cdk9 ENSMUST00000120105 ENSMUSP00000113327 TRANSLATION protein_coding - - 1 321.0 11.0 5.91 0.0 189.1 0.0 -4,-5 0.0255 7 7.02 MINOR ENSMUSG00000009555 Cdk9 ENSMUST00000123170 ENSMUSP00000115318 TRANSLATION nonsense_mediated_decay - - 1 36.0 4.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009555 Cdk9 ENSMUST00000144210 - NO_TRANSLATION retained_intron ENSMUSG00000009555 Cdk9 ENSMUST00000155205 ENSMUSP00000115299 TRANSLATION protein_coding stop - 3 54.0 4.0 1.91 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000009555 Cdk9 ENSMUST00000154131 ENSMUSP00000120857 TRANSLATION nonsense_mediated_decay - - 3 61.0 7.0 2.08 0.0 36.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000009555 Cdk9 ENSMUST00000130399 - NO_TRANSLATION retained_intron ENSMUSG00000009555 Cdk9 ENSMUST00000128265 - NO_TRANSLATION retained_intron ENSMUSG00000026672 Optn ENSMUST00000125203 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026672 Optn ENSMUST00000143809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026672 Optn ENSMUST00000027986 ENSMUSP00000027986 TRANSLATION protein_coding - CCDS15663.1 1 584.0 3.0 4.8 0.1 183.4 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000026672 Optn ENSMUST00000114996 ENSMUSP00000110648 TRANSLATION protein_coding - CCDS15663.1 1 584.0 3.0 4.8 0.1 183.4 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000026672 Optn ENSMUST00000145501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096337 Cwc22rt5 ENSMUST00000178655 ENSMUSP00000136971 TRANSLATION protein_coding start - 5 243.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0008 - -2.0 MINOR ENSMUSG00000096337 Cwc22rt5 ENSMUST00000178533 ENSMUSP00000135979 TRANSLATION protein_coding - - - 830.0 0.0 3.43 0.0 130.3 0.0 -4,-2 0.8382 - 12.0 PRINCIPAL:1 ENSMUSG00000087364 Gm13398 ENSMUST00000149378 ENSMUSP00000158962 TRANSLATION protein_coding - - 1 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000027485 Bpifb1 ENSMUST00000028987 ENSMUSP00000028987 TRANSLATION protein_coding - CCDS16927.1 1 474.0 0.0 2.12 3.2 116.7 0.0 4,-1 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000027485 Bpifb1 ENSMUST00000081816 ENSMUSP00000080501 TRANSLATION protein_coding - CCDS16927.1 1 474.0 0.0 2.12 3.2 116.7 0.0 4,-1 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000027485 Bpifb1 ENSMUST00000123017 - NO_TRANSLATION retained_intron ENSMUSG00000111306 Or8k27 ENSMUST00000217586 ENSMUSP00000149248 TRANSLATION protein_coding - CCDS16256.1 5 313.0 0.0 1.0 10.4 179.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111306 Or8k27 ENSMUST00000216165 ENSMUSP00000150875 TRANSLATION protein_coding - CCDS16256.1 - 313.0 0.0 1.0 10.4 179.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111306 Or8k27 ENSMUST00000213789 ENSMUSP00000150862 TRANSLATION protein_coding - CCDS16256.1 3 313.0 0.0 1.0 10.4 179.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111306 Or8k27 ENSMUST00000216162 ENSMUSP00000149089 TRANSLATION protein_coding - CCDS16256.1 3 313.0 0.0 1.0 10.4 179.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039826 Trub2 ENSMUST00000177467 ENSMUSP00000135521 TRANSLATION protein_coding - CCDS71016.1 3 194.0 0.0 5.25 0.0 51.0 0.0 -4,-7 0.0042 - 4.308 MINOR ENSMUSG00000039826 Trub2 ENSMUST00000113807 ENSMUSP00000109438 TRANSLATION protein_coding - - 1 204.0 0.0 5.25 0.0 51.3 0.0 -4,-7 0.0 - 4.332 MINOR ENSMUSG00000039826 Trub2 ENSMUST00000176312 ENSMUSP00000134787 TRANSLATION nonsense_mediated_decay - - 3 121.0 0.0 2.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039826 Trub2 ENSMUST00000176167 - NO_TRANSLATION retained_intron ENSMUSG00000039826 Trub2 ENSMUST00000156846 ENSMUSP00000135464 TRANSLATION nonsense_mediated_decay - - 1 121.0 0.0 2.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039826 Trub2 ENSMUST00000177133 ENSMUSP00000135893 TRANSLATION nonsense_mediated_decay - - 2 121.0 0.0 2.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039826 Trub2 ENSMUST00000048044 ENSMUSP00000041848 TRANSLATION protein_coding - CCDS15856.1 1 331.0 0.0 7.75 4.1 92.5 0.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000039826 Trub2 ENSMUST00000113803 - NO_TRANSLATION retained_intron ENSMUSG00000039826 Trub2 ENSMUST00000175644 - NO_TRANSLATION retained_intron ENSMUSG00000039826 Trub2 ENSMUST00000148120 - NO_TRANSLATION retained_intron ENSMUSG00000027087 Itgav ENSMUST00000148256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027087 Itgav ENSMUST00000111740 ENSMUSP00000107369 TRANSLATION protein_coding - - 5 1008.0 33.0 21.425 0.0 530.7 3.0 3,-1 0.2836 40 15.498 MINOR ENSMUSG00000027087 Itgav ENSMUST00000131192 ENSMUSP00000121295 TRANSLATION protein_coding start - 5 59.0 0.0 0.375 0.0 26.3 3.0 -1,-5 0.0033 1 -2.0 MINOR ENSMUSG00000027087 Itgav ENSMUST00000125360 - NO_TRANSLATION retained_intron ENSMUSG00000027087 Itgav ENSMUST00000151463 - NO_TRANSLATION retained_intron ENSMUSG00000027087 Itgav ENSMUST00000125402 ENSMUSP00000118016 TRANSLATION protein_coding start - 3 120.0 0.0 2.375 0.0 26.3 3.0 -4,-5 0.0011 3 -2.0 MINOR ENSMUSG00000027087 Itgav ENSMUST00000141725 ENSMUSP00000122730 TRANSLATION protein_coding stop - 1 135.0 0.0 2.8 0.0 0.0 0.0 3,-1 0.0011 5 -2.0 MINOR ENSMUSG00000027087 Itgav ENSMUST00000028499 ENSMUSP00000028499 TRANSLATION protein_coding - CCDS16181.1 1 1044.0 33.0 22.675 0.7 530.7 3.0 3,-1 1.0 41 18.0 PRINCIPAL:1 ENSMUSG00000027087 Itgav ENSMUST00000155521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001768 Rin2 ENSMUST00000149269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001768 Rin2 ENSMUST00000231581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001768 Rin2 ENSMUST00000094480 ENSMUSP00000092053 TRANSLATION protein_coding - CCDS50734.1 5 858.0 0.0 2.156 2.1 130.6 0.0 -4,-5 0.9183 9 8.5 ALTERNATIVE:2 ENSMUSG00000001768 Rin2 ENSMUST00000144278 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001768 Rin2 ENSMUST00000145874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001768 Rin2 ENSMUST00000144661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001768 Rin2 ENSMUST00000142847 ENSMUSP00000125476 TRANSLATION protein_coding stop - 3 31.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001768 Rin2 ENSMUST00000147976 ENSMUSP00000124206 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001768 Rin2 ENSMUST00000150449 ENSMUSP00000124078 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001768 Rin2 ENSMUST00000137180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001768 Rin2 ENSMUST00000110005 ENSMUSP00000105632 TRANSLATION protein_coding - - 5 903.0 0.0 2.156 3.2 130.6 0.0 -4,-6 1.0 9 9.0 PRINCIPAL:4 ENSMUSG00000090077 Lime1 ENSMUST00000126862 - NO_TRANSLATION retained_intron ENSMUSG00000090077 Lime1 ENSMUST00000126733 - NO_TRANSLATION retained_intron ENSMUSG00000090077 Lime1 ENSMUST00000126611 ENSMUSP00000119181 TRANSLATION protein_coding start - 1 249.0 0.0 0.0 0.0 356.9 0.0 -4,-7 0.0381 3 -2.0 MINOR ENSMUSG00000090077 Lime1 ENSMUST00000140943 ENSMUSP00000117558 TRANSLATION protein_coding start/stop - 2 189.0 0.0 0.0 0.0 236.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000090077 Lime1 ENSMUST00000184328 - NO_TRANSLATION retained_intron ENSMUSG00000090077 Lime1 ENSMUST00000108804 ENSMUSP00000104432 TRANSLATION protein_coding - - 3 87.0 0.0 0.0 0.0 90.7 0.0 3,-2 0.003 1 0.0 MINOR ENSMUSG00000090077 Lime1 ENSMUST00000048077 ENSMUSP00000045010 TRANSLATION protein_coding - CCDS17211.1 1 269.0 0.0 0.0 0.1 362.2 0.0 3,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000049692 Tmem239 ENSMUST00000055421 ENSMUSP00000055299 TRANSLATION protein_coding - CCDS16742.1 1 151.0 0.0 1.0 8.0 271.1 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000027206 Cops2 ENSMUST00000110462 ENSMUSP00000106089 TRANSLATION protein_coding - - 5 402.0 0.0 10.33 0.1 91.0 0.0 -4,-5 0.02 15 6.002 MINOR ENSMUSG00000027206 Cops2 ENSMUST00000139343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027206 Cops2 ENSMUST00000028635 ENSMUSP00000028635 TRANSLATION protein_coding - CCDS16679.1 1 443.0 0.0 11.33 34.2 91.0 0.0 -4,-5 1.0 16 12.0 PRINCIPAL:4 ENSMUSG00000027206 Cops2 ENSMUST00000152683 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027206 Cops2 ENSMUST00000110463 ENSMUSP00000106090 TRANSLATION protein_coding - CCDS71133.1 1 450.0 0.0 11.33 34.2 91.0 0.0 -4,-5 0.9936 16 12.0 ALTERNATIVE:1 ENSMUSG00000027574 Nkain4 ENSMUST00000139929 ENSMUSP00000116965 TRANSLATION protein_coding start/stop - 3 144.0 0.0 1.09 0.0 171.8 4.0 2,-2 0.0029 1 -2.0 MINOR ENSMUSG00000027574 Nkain4 ENSMUST00000151494 ENSMUSP00000114891 TRANSLATION protein_coding start - 3 40.0 0.0 0.3 0.0 40.9 3.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000027574 Nkain4 ENSMUST00000103053 ENSMUSP00000099342 TRANSLATION protein_coding - CCDS17189.1 1 208.0 0.0 2.34 28.5 313.8 8.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027574 Nkain4 ENSMUST00000134231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027574 Nkain4 ENSMUST00000148905 ENSMUSP00000119925 TRANSLATION protein_coding stop - 3 140.0 0.0 1.59 0.0 181.4 3.0 4,-1 0.001 1 -2.0 MINOR ENSMUSG00000027574 Nkain4 ENSMUST00000108873 ENSMUSP00000104501 TRANSLATION protein_coding - CCDS50841.1 1 181.0 0.0 2.34 19.3 274.5 8.0 4,-1 0.8031 1 12.302 MINOR ENSMUSG00000027574 Nkain4 ENSMUST00000137274 ENSMUSP00000118349 TRANSLATION protein_coding stop - 5 77.0 0.0 1.75 0.0 143.9 5.0 -4,-6 0.0042 - -2.0 MINOR ENSMUSG00000041975 Mettl8 ENSMUST00000090849 ENSMUSP00000088359 TRANSLATION protein_coding - - 1 163.0 8.0 2.1 0.0 0.0 0.0 -4,0 0.0 - 0.0 MINOR ENSMUSG00000041975 Mettl8 ENSMUST00000121586 ENSMUSP00000113642 TRANSLATION protein_coding - - 5 281.0 29.0 4.68 0.0 34.2 0.0 -4,0 0.0045 2 7.398 MINOR ENSMUSG00000041975 Mettl8 ENSMUST00000124273 - NO_TRANSLATION retained_intron ENSMUSG00000041975 Mettl8 ENSMUST00000112179 ENSMUSP00000107800 TRANSLATION nonsense_mediated_decay - - 2 206.0 4.0 2.4 0.0 0.0 0.0 -4,0 0.0007 2 -2.0 MINOR ENSMUSG00000041975 Mettl8 ENSMUST00000112186 ENSMUSP00000107804 TRANSLATION protein_coding - CCDS50600.1 2 388.0 29.0 6.98 0.0 51.0 0.0 -4,0 1.0 2 14.0 PRINCIPAL:2 ENSMUSG00000041975 Mettl8 ENSMUST00000148876 ENSMUSP00000115855 TRANSLATION nonsense_mediated_decay - - 1 304.0 29.0 4.68 0.0 34.2 0.0 -4,0 0.0082 2 -2.0 MINOR ENSMUSG00000041975 Mettl8 ENSMUST00000140293 ENSMUSP00000118026 TRANSLATION protein_coding start - 3 110.0 13.0 2.748 0.0 29.6 0.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000041975 Mettl8 ENSMUST00000149181 ENSMUSP00000119863 TRANSLATION nonsense_mediated_decay start - 5 148.0 10.0 1.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000041975 Mettl8 ENSMUST00000124781 - NO_TRANSLATION retained_intron ENSMUSG00000041975 Mettl8 ENSMUST00000100037 ENSMUSP00000097615 TRANSLATION protein_coding - - 1 341.0 29.0 6.58 0.0 51.0 0.0 -4,-5 0.0363 2 13.202 ALTERNATIVE:2 ENSMUSG00000041975 Mettl8 ENSMUST00000124208 - NO_TRANSLATION retained_intron ENSMUSG00000039262 Prrc2b ENSMUST00000036691 ENSMUSP00000035734 TRANSLATION protein_coding - CCDS15907.1 1 1486.0 0.0 0.0 0.0 222.1 0.0 -4,-5 1.0 28 2.0 PRINCIPAL:2 ENSMUSG00000039262 Prrc2b ENSMUST00000123270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039262 Prrc2b ENSMUST00000069817 ENSMUSP00000064892 TRANSLATION protein_coding - CCDS50565.1 1 2230.0 0.0 0.0 0.0 222.1 0.0 -4,-5 0.4922 34 2.0 ALTERNATIVE:2 ENSMUSG00000039262 Prrc2b ENSMUST00000156313 ENSMUSP00000114994 TRANSLATION protein_coding start/stop - 3 250.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 3 -2.0 MINOR ENSMUSG00000039262 Prrc2b ENSMUST00000142219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039262 Prrc2b ENSMUST00000128936 ENSMUSP00000121664 TRANSLATION protein_coding start/stop - 3 232.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 2 -2.0 MINOR ENSMUSG00000039262 Prrc2b ENSMUST00000129626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039262 Prrc2b ENSMUST00000141053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039262 Prrc2b ENSMUST00000132459 ENSMUSP00000116429 TRANSLATION protein_coding start - 1 1472.0 0.0 0.0 0.0 86.5 0.0 -4,-5 0.0772 27 -2.0 MINOR ENSMUSG00000039262 Prrc2b ENSMUST00000140015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059910 Or4x11 ENSMUST00000214855 ENSMUSP00000149684 TRANSLATION protein_coding - CCDS16404.1 5 309.0 0.0 1.0 10.7 167.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059910 Or4x11 ENSMUST00000080311 ENSMUSP00000079190 TRANSLATION protein_coding - CCDS16404.1 - 309.0 0.0 1.0 10.7 167.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042745 Id1 ENSMUST00000038368 ENSMUSP00000092019 TRANSLATION protein_coding - CCDS16897.1 1 148.0 0.0 0.6 9.3 48.0 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000042745 Id1 ENSMUST00000109824 ENSMUSP00000105449 TRANSLATION protein_coding - - - 168.0 0.0 0.6 0.0 48.0 0.0 -4,-7 0.0334 3 12.0 MINOR ENSMUSG00000049744 Arhgap15 ENSMUST00000055776 ENSMUSP00000056461 TRANSLATION protein_coding - CCDS16019.1 1 481.0 5.0 7.98 0.4 216.9 0.0 -4,-5 1.0 8 17.0 PRINCIPAL:1 ENSMUSG00000049744 Arhgap15 ENSMUST00000128630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049744 Arhgap15 ENSMUST00000140528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049744 Arhgap15 ENSMUST00000112824 ENSMUSP00000108443 TRANSLATION protein_coding - CCDS79793.1 1 477.0 5.0 6.98 0.0 179.4 0.0 -4,-5 0.1319 7 12.752 MINOR ENSMUSG00000049744 Arhgap15 ENSMUST00000112822 ENSMUSP00000108441 TRANSLATION nonsense_mediated_decay - - 1 108.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027423 Snx5 ENSMUST00000124389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027423 Snx5 ENSMUST00000138745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027423 Snx5 ENSMUST00000156936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027423 Snx5 ENSMUST00000028909 ENSMUSP00000028909 TRANSLATION protein_coding - CCDS16815.1 1 404.0 0.0 10.0 17.0 132.7 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000027423 Snx5 ENSMUST00000110030 ENSMUSP00000105657 TRANSLATION protein_coding - CCDS16815.1 1 404.0 0.0 10.0 17.0 132.7 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000027423 Snx5 ENSMUST00000155509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027423 Snx5 ENSMUST00000153033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027423 Snx5 ENSMUST00000125285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036731 Cysrt1 ENSMUST00000114356 ENSMUSP00000109996 TRANSLATION protein_coding stop - 5 114.0 0.0 0.0 0.0 196.8 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000036731 Cysrt1 ENSMUST00000186719 ENSMUSP00000140416 TRANSLATION protein_coding - CCDS50526.1 - 142.0 0.0 0.0 3.6 271.5 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000036731 Cysrt1 ENSMUST00000043379 ENSMUSP00000045363 TRANSLATION protein_coding - CCDS50526.1 1 142.0 0.0 0.0 3.6 271.5 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000006494 Pdk1 ENSMUST00000129427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006494 Pdk1 ENSMUST00000148249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006494 Pdk1 ENSMUST00000152696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006494 Pdk1 ENSMUST00000134362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006494 Pdk1 ENSMUST00000156036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006494 Pdk1 ENSMUST00000129887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006494 Pdk1 ENSMUST00000006669 ENSMUSP00000006669 TRANSLATION protein_coding - CCDS16119.1 1 434.0 26.0 9.85 6.0 229.3 0.0 -2,2 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000006494 Pdk1 ENSMUST00000151358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038990 Cables2 ENSMUST00000108891 ENSMUSP00000104519 TRANSLATION protein_coding - CCDS38377.1 1 476.0 0.0 3.2 0.0 32.8 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000038990 Cables2 ENSMUST00000135301 - NO_TRANSLATION retained_intron ENSMUSG00000038990 Cables2 ENSMUST00000126688 - NO_TRANSLATION retained_intron ENSMUSG00000038990 Cables2 ENSMUST00000136706 - NO_TRANSLATION retained_intron ENSMUSG00000038990 Cables2 ENSMUST00000141067 - NO_TRANSLATION retained_intron ENSMUSG00000090100 Ttbk2 ENSMUST00000141921 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090100 Ttbk2 ENSMUST00000143051 ENSMUSP00000121996 TRANSLATION protein_coding stop - 1 872.0 3.0 8.25 0.0 105.8 0.0 -4,-5 0.0771 5 -2.0 MINOR ENSMUSG00000090100 Ttbk2 ENSMUST00000085840 ENSMUSP00000083001 TRANSLATION protein_coding - CCDS16627.1 5 1243.0 3.0 8.25 8.5 105.8 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000090100 Ttbk2 ENSMUST00000057135 ENSMUSP00000055032 TRANSLATION protein_coding - CCDS16627.1 1 1243.0 3.0 8.25 8.5 105.8 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000090100 Ttbk2 ENSMUST00000028740 ENSMUSP00000028740 TRANSLATION protein_coding - CCDS16626.1 1 1312.0 3.0 8.25 0.4 105.8 0.0 -4,-2 0.4832 8 15.0 MINOR ENSMUSG00000090100 Ttbk2 ENSMUST00000131389 ENSMUSP00000118905 TRANSLATION protein_coding stop - 5 436.0 0.0 7.25 0.0 64.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032869 Psmf1 ENSMUST00000155939 ENSMUSP00000117723 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 1.0 0.0 24.8 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000032869 Psmf1 ENSMUST00000123449 - NO_TRANSLATION retained_intron ENSMUSG00000032869 Psmf1 ENSMUST00000109869 ENSMUSP00000105495 TRANSLATION protein_coding - CCDS16872.1 5 271.0 0.0 3.75 19.6 96.3 0.0 -3,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000032869 Psmf1 ENSMUST00000151656 - NO_TRANSLATION retained_intron ENSMUSG00000032869 Psmf1 ENSMUST00000125977 - NO_TRANSLATION retained_intron ENSMUSG00000032869 Psmf1 ENSMUST00000042452 ENSMUSP00000041184 TRANSLATION protein_coding - CCDS16872.1 1 271.0 0.0 3.75 19.6 96.3 0.0 -3,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000096703 Or4k40 ENSMUST00000184954 ENSMUSP00000144852 TRANSLATION protein_coding - CCDS16525.1 3 305.0 0.0 1.0 0.0 159.6 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096703 Or4k40 ENSMUST00000213210 ENSMUSP00000148932 TRANSLATION protein_coding - CCDS16525.1 5 305.0 0.0 1.0 0.0 159.6 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096703 Or4k40 ENSMUST00000099617 ENSMUSP00000097212 TRANSLATION protein_coding - CCDS16525.1 - 305.0 0.0 1.0 0.0 159.6 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000010911 Apip ENSMUST00000147131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010911 Apip ENSMUST00000011055 ENSMUSP00000011055 TRANSLATION protein_coding - CCDS16474.1 1 241.0 3.0 5.5 15.4 159.3 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000010911 Apip ENSMUST00000155004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010911 Apip ENSMUST00000124540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075192 Or8k21 ENSMUST00000099897 ENSMUSP00000097481 TRANSLATION protein_coding - CCDS50625.1 - 313.0 0.0 1.0 11.5 154.8 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026825 Dnm1 ENSMUST00000129156 ENSMUSP00000118914 TRANSLATION nonsense_mediated_decay start - 5 283.0 0.0 5.08 0.0 139.9 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000026825 Dnm1 ENSMUST00000113352 ENSMUSP00000108979 TRANSLATION protein_coding - - 2 851.0 18.0 17.08 8.4 702.7 0.0 -4,-6 0.8642 36 16.502 ALTERNATIVE:1 ENSMUSG00000026825 Dnm1 ENSMUST00000113350 ENSMUSP00000108977 TRANSLATION protein_coding - - 5 851.0 18.0 17.08 8.4 702.7 0.0 -4,-6 0.8642 36 16.502 ALTERNATIVE:1 ENSMUSG00000026825 Dnm1 ENSMUST00000201494 ENSMUSP00000144145 TRANSLATION protein_coding - - 5 835.0 18.0 16.58 0.0 590.3 0.0 -4,-6 0.056 38 11.834 MINOR ENSMUSG00000026825 Dnm1 ENSMUST00000139238 ENSMUSP00000118855 TRANSLATION nonsense_mediated_decay - - 3 59.0 7.0 1.0 0.0 28.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026825 Dnm1 ENSMUST00000145885 - NO_TRANSLATION retained_intron ENSMUSG00000026825 Dnm1 ENSMUST00000091089 ENSMUSP00000088618 TRANSLATION protein_coding - CCDS38102.1 1 864.0 18.0 17.08 6.0 702.7 0.0 -4,-6 0.9129 34 15.53 MINOR ENSMUSG00000026825 Dnm1 ENSMUST00000201433 ENSMUSP00000144264 TRANSLATION protein_coding - - 5 864.0 18.0 17.33 7.2 698.6 0.0 -4,-6 0.7741 40 16.514 PRINCIPAL:3 ENSMUSG00000026825 Dnm1 ENSMUST00000201440 ENSMUSP00000144309 TRANSLATION nonsense_mediated_decay start - 5 110.0 0.0 1.0 0.0 30.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026825 Dnm1 ENSMUST00000141633 - NO_TRANSLATION retained_intron ENSMUSG00000026825 Dnm1 ENSMUST00000139624 ENSMUSP00000122679 TRANSLATION nonsense_mediated_decay - - 1 867.0 18.0 17.08 0.0 702.7 0.0 -4,-6 0.1676 36 -2.0 MINOR ENSMUSG00000026825 Dnm1 ENSMUST00000078352 ENSMUSP00000077461 TRANSLATION protein_coding - CCDS79772.1 1 851.0 18.0 17.33 8.4 698.6 0.0 -4,-6 1.0 38 17.0 ALTERNATIVE:1 ENSMUSG00000026825 Dnm1 ENSMUST00000139291 ENSMUSP00000115523 TRANSLATION protein_coding start - 3 149.0 0.0 1.0 0.0 30.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026825 Dnm1 ENSMUST00000202578 ENSMUSP00000143955 TRANSLATION protein_coding - CCDS79772.1 5 851.0 18.0 17.33 8.4 698.6 0.0 -4,-6 1.0 38 17.0 ALTERNATIVE:1 ENSMUSG00000026825 Dnm1 ENSMUST00000113365 ENSMUSP00000108992 TRANSLATION protein_coding - - 5 864.0 18.0 17.08 7.2 702.7 0.0 -4,-6 0.8063 38 16.016 ALTERNATIVE:1 ENSMUSG00000026825 Dnm1 ENSMUST00000156866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026825 Dnm1 ENSMUST00000155269 ENSMUSP00000116054 TRANSLATION protein_coding start - 5 159.0 0.0 1.33 0.0 40.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000089762 Ier5l ENSMUST00000065134 ENSMUSP00000132594 TRANSLATION protein_coding - CCDS38095.1 - 406.0 0.0 0.0 1.5 459.3 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000027204 Fbn1 ENSMUST00000148272 - NO_TRANSLATION retained_intron ENSMUSG00000027204 Fbn1 ENSMUST00000028633 ENSMUSP00000028633 TRANSLATION protein_coding - CCDS16676.1 1 2873.0 84.0 45.77 10.8 1813.0 0.0 1,-2 1.0 87 21.0 PRINCIPAL:1 ENSMUSG00000027204 Fbn1 ENSMUST00000103234 ENSMUSP00000099524 TRANSLATION protein_coding - CCDS16676.1 1 2873.0 84.0 45.77 10.8 1813.0 0.0 1,-2 1.0 87 21.0 PRINCIPAL:1 ENSMUSG00000102091 Or5m9 ENSMUST00000213496 ENSMUSP00000150150 TRANSLATION protein_coding - CCDS16235.1 - 310.0 0.0 1.0 12.5 168.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034848 Ttc21b ENSMUST00000169968 - NO_TRANSLATION retained_intron ENSMUSG00000034848 Ttc21b ENSMUST00000131503 - NO_TRANSLATION retained_intron ENSMUSG00000034848 Ttc21b ENSMUST00000102718 ENSMUSP00000099779 TRANSLATION protein_coding - CCDS16076.1 1 1315.0 0.0 4.05 15.4 48.7 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000034848 Ttc21b ENSMUST00000125446 ENSMUSP00000131758 TRANSLATION protein_coding - CCDS71061.1 1 1269.0 0.0 4.05 0.0 48.7 0.0 -4,-5 0.4118 16 12.0 MINOR ENSMUSG00000036641 Ccdc148 ENSMUST00000134708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036641 Ccdc148 ENSMUST00000226455 ENSMUSP00000153944 TRANSLATION protein_coding - - - 599.0 0.0 0.0 3.0 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000036641 Ccdc148 ENSMUST00000077687 ENSMUSP00000076871 TRANSLATION protein_coding - CCDS50587.1 1 527.0 0.0 0.0 0.3 0.0 0.0 -4,-5 0.2563 - 0.0 ALTERNATIVE:2 ENSMUSG00000036641 Ccdc148 ENSMUST00000131959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056486 Chn1 ENSMUST00000136953 ENSMUSP00000123551 TRANSLATION protein_coding stop - 3 81.0 5.0 2.16 0.0 59.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056486 Chn1 ENSMUST00000229987 - NO_TRANSLATION retained_intron ENSMUSG00000056486 Chn1 ENSMUST00000231013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056486 Chn1 ENSMUST00000102677 ENSMUSP00000099738 TRANSLATION protein_coding - CCDS16133.1 1 334.0 8.0 6.535 13.1 231.6 0.0 -4,-7 0.2773 4 11.798 MINOR ENSMUSG00000056486 Chn1 ENSMUST00000135904 ENSMUSP00000115029 TRANSLATION protein_coding stop - 2 128.0 0.0 2.0 0.0 45.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056486 Chn1 ENSMUST00000166199 ENSMUSP00000128847 TRANSLATION protein_coding - CCDS50607.1 1 401.0 3.0 7.635 0.0 229.8 0.0 -4,-5 0.006 4 8.538 MINOR ENSMUSG00000056486 Chn1 ENSMUST00000180045 ENSMUSP00000137106 TRANSLATION protein_coding - CCDS38145.1 1 210.0 1.0 4.83 0.0 173.1 0.0 -4,-5 0.0045 2 0.75 MINOR ENSMUSG00000056486 Chn1 ENSMUST00000229312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056486 Chn1 ENSMUST00000112024 ENSMUSP00000107655 TRANSLATION protein_coding - CCDS50608.1 1 459.0 8.0 8.965 31.2 280.7 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000056486 Chn1 ENSMUST00000139252 ENSMUSP00000123312 TRANSLATION nonsense_mediated_decay - - 3 87.0 0.0 2.33 0.0 36.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000056486 Chn1 ENSMUST00000229731 ENSMUSP00000155037 TRANSLATION protein_coding - CCDS38145.1 - 210.0 1.0 4.83 0.0 173.1 0.0 -4,-5 0.0045 2 0.75 MINOR ENSMUSG00000056486 Chn1 ENSMUST00000070579 ENSMUSP00000070301 TRANSLATION protein_coding - CCDS38145.1 1 210.0 1.0 4.83 0.0 173.1 0.0 -4,-5 0.0045 2 0.75 MINOR ENSMUSG00000056486 Chn1 ENSMUST00000124450 ENSMUSP00000116708 TRANSLATION nonsense_mediated_decay start - 3 29.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056486 Chn1 ENSMUST00000154258 ENSMUSP00000116417 TRANSLATION protein_coding stop - 5 95.0 5.0 2.66 0.0 69.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056486 Chn1 ENSMUST00000230959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033396 Spg11 ENSMUST00000135847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033396 Spg11 ENSMUST00000036450 ENSMUSP00000037543 TRANSLATION protein_coding - CCDS50687.1 1 2430.0 0.0 0.0 0.1 339.3 0.0 -4,-7 1.0 24 6.0 PRINCIPAL:1 ENSMUSG00000033396 Spg11 ENSMUST00000133145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043415 Otud1 ENSMUST00000052168 ENSMUSP00000100617 TRANSLATION protein_coding - CCDS50508.1 - 454.0 0.0 0.8 0.0 87.5 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000026828 Galnt5 ENSMUST00000112616 ENSMUSP00000108235 TRANSLATION protein_coding - CCDS38125.1 1 930.0 21.0 8.75 0.4 149.7 0.0 -3,-6 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000026828 Galnt5 ENSMUST00000144671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026828 Galnt5 ENSMUST00000166729 ENSMUSP00000131362 TRANSLATION protein_coding - CCDS38125.1 2 930.0 21.0 8.75 0.4 149.7 0.0 -3,-6 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000001815 Evx2 ENSMUST00000001867 ENSMUSP00000001867 TRANSLATION protein_coding - - 1 474.0 0.0 0.8 2.2 73.3 0.0 -4,-7 0.8507 - 9.0 ALTERNATIVE:2 ENSMUSG00000001815 Evx2 ENSMUST00000173623 ENSMUSP00000134131 TRANSLATION protein_coding - CCDS16138.1 1 475.0 0.0 0.8 2.2 73.3 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000033068 Entpd6 ENSMUST00000146517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033068 Entpd6 ENSMUST00000094467 ENSMUSP00000092038 TRANSLATION protein_coding - CCDS16861.1 1 455.0 0.0 10.25 0.0 239.7 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000033068 Entpd6 ENSMUST00000147223 - NO_TRANSLATION retained_intron ENSMUSG00000033068 Entpd6 ENSMUST00000139723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079497 Gm13420 ENSMUST00000129574 ENSMUSP00000147234 TRANSLATION protein_coding - - 5 248.0 0.0 0.0 0.4 70.9 0.0 -4,-5 0.7087 1 6.0 PRINCIPAL:1 ENSMUSG00000068079 Tcf15 ENSMUST00000089112 ENSMUSP00000086511 TRANSLATION protein_coding - CCDS16878.1 1 195.0 0.0 0.6 7.6 63.4 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000010914 Pdhx ENSMUST00000111183 ENSMUSP00000106814 TRANSLATION protein_coding - - 1 220.0 0.0 3.35 0.0 95.6 0.0 -4,0 0.0 4 0.0 MINOR ENSMUSG00000010914 Pdhx ENSMUST00000011058 ENSMUSP00000011058 TRANSLATION protein_coding - CCDS16473.1 1 501.0 0.0 8.5 7.1 342.2 0.0 -4,0 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000010914 Pdhx ENSMUST00000132449 ENSMUSP00000119172 TRANSLATION protein_coding start/stop - 3 218.0 0.0 3.0 0.0 79.7 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000033526 Ppip5k1 ENSMUST00000132613 ENSMUSP00000119577 TRANSLATION protein_coding start/stop - 5 198.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000033526 Ppip5k1 ENSMUST00000132114 ENSMUSP00000117948 TRANSLATION protein_coding start/stop - 3 271.0 0.0 0.0 0.0 97.1 0.0 -4,-5 0.0006 3 -2.0 MINOR ENSMUSG00000033526 Ppip5k1 ENSMUST00000129276 - NO_TRANSLATION retained_intron ENSMUSG00000033526 Ppip5k1 ENSMUST00000052029 ENSMUSP00000057632 TRANSLATION protein_coding - CCDS16639.1 1 1436.0 23.0 8.75 0.0 443.8 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:2 ENSMUSG00000033526 Ppip5k1 ENSMUST00000110626 ENSMUSP00000106256 TRANSLATION protein_coding - CCDS16639.1 5 1436.0 23.0 8.75 0.0 443.8 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:2 ENSMUSG00000033526 Ppip5k1 ENSMUST00000137087 ENSMUSP00000115051 TRANSLATION nonsense_mediated_decay start - 5 118.0 13.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033526 Ppip5k1 ENSMUST00000131661 - NO_TRANSLATION retained_intron ENSMUSG00000033526 Ppip5k1 ENSMUST00000150081 - NO_TRANSLATION retained_intron ENSMUSG00000033526 Ppip5k1 ENSMUST00000132617 - NO_TRANSLATION retained_intron ENSMUSG00000033526 Ppip5k1 ENSMUST00000110627 ENSMUSP00000106257 TRANSLATION protein_coding - - 5 1415.0 23.0 8.75 0.0 443.8 0.0 -4,-5 0.4149 17 12.0 ALTERNATIVE:2 ENSMUSG00000033526 Ppip5k1 ENSMUST00000110625 ENSMUSP00000106255 TRANSLATION protein_coding - - 5 1415.0 23.0 8.75 0.0 443.8 0.0 -4,-5 0.4149 17 12.0 ALTERNATIVE:2 ENSMUSG00000033526 Ppip5k1 ENSMUST00000142364 - NO_TRANSLATION retained_intron ENSMUSG00000033526 Ppip5k1 ENSMUST00000134796 ENSMUSP00000122603 TRANSLATION protein_coding stop - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033526 Ppip5k1 ENSMUST00000110628 ENSMUSP00000106258 TRANSLATION protein_coding - - 5 1416.0 23.0 8.75 0.0 409.4 0.0 -4,-5 0.1557 17 12.0 MINOR ENSMUSG00000033526 Ppip5k1 ENSMUST00000127255 ENSMUSP00000118597 TRANSLATION protein_coding start/stop - 5 283.0 0.0 0.0 0.0 35.4 0.0 -4,-5 0.0006 3 -2.0 MINOR ENSMUSG00000033526 Ppip5k1 ENSMUST00000155568 ENSMUSP00000116335 TRANSLATION protein_coding start/stop - 5 257.0 0.0 0.0 0.0 95.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000033526 Ppip5k1 ENSMUST00000140764 - NO_TRANSLATION retained_intron ENSMUSG00000033526 Ppip5k1 ENSMUST00000134644 - NO_TRANSLATION retained_intron ENSMUSG00000050772 Or10ag58 ENSMUST00000215909 ENSMUSP00000150244 TRANSLATION protein_coding - CCDS16291.1 5 318.0 0.0 1.0 3.2 173.8 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000050772 Or10ag58 ENSMUST00000062494 ENSMUSP00000062513 TRANSLATION protein_coding - CCDS16291.1 - 318.0 0.0 1.0 3.2 173.8 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026712 Mrc1 ENSMUST00000028045 ENSMUSP00000028045 TRANSLATION protein_coding - CCDS15700.1 1 1456.0 38.0 18.925 4.1 662.8 0.0 2,-2 1.0 58 20.0 PRINCIPAL:1 ENSMUSG00000026712 Mrc1 ENSMUST00000146168 - NO_TRANSLATION retained_intron ENSMUSG00000027656 Ccn5 ENSMUST00000138730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027656 Ccn5 ENSMUST00000029188 ENSMUSP00000029188 TRANSLATION protein_coding - CCDS17016.1 1 251.0 0.0 1.1 7.5 77.2 0.0 4,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000037376 Trmt6 ENSMUST00000145117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037376 Trmt6 ENSMUST00000127855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037376 Trmt6 ENSMUST00000152836 - NO_TRANSLATION retained_intron ENSMUSG00000037376 Trmt6 ENSMUST00000136897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037376 Trmt6 ENSMUST00000147336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037376 Trmt6 ENSMUST00000039554 ENSMUSP00000044687 TRANSLATION protein_coding - CCDS50728.1 1 497.0 0.0 7.12375 5.3 238.9 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000050587 Lrrc4c ENSMUST00000162807 ENSMUSP00000125218 TRANSLATION protein_coding - CCDS16460.1 1 640.0 0.0 1.0 14.5 140.5 1.0 0,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000050587 Lrrc4c ENSMUST00000059049 ENSMUSP00000131795 TRANSLATION protein_coding - CCDS16460.1 1 640.0 0.0 1.0 14.5 140.5 1.0 0,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000050587 Lrrc4c ENSMUST00000135431 ENSMUSP00000130984 TRANSLATION protein_coding - CCDS16460.1 1 640.0 0.0 1.0 14.5 140.5 1.0 0,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000050587 Lrrc4c ENSMUST00000170144 ENSMUSP00000128490 TRANSLATION protein_coding stop - 3 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000026819 Slc25a25 ENSMUST00000113307 ENSMUSP00000108932 TRANSLATION protein_coding - CCDS71028.1 1 469.0 15.0 7.17 25.9 302.2 0.0 -2,-5 1.0 11 17.098 PRINCIPAL:1 ENSMUSG00000026819 Slc25a25 ENSMUST00000052119 ENSMUSP00000060581 TRANSLATION protein_coding - CCDS50567.1 1 501.0 15.0 7.42 9.7 293.7 0.0 -1,-4 0.4636 12 14.798 MINOR ENSMUSG00000026819 Slc25a25 ENSMUST00000113310 ENSMUSP00000108936 TRANSLATION protein_coding - CCDS50568.1 1 502.0 15.0 7.37 10.7 319.5 0.0 -4,-7 0.5761 12 15.26 MINOR ENSMUSG00000026819 Slc25a25 ENSMUST00000113308 ENSMUSP00000108933 TRANSLATION protein_coding - - 5 489.0 15.0 7.27 11.6 302.2 0.0 -1,-4 0.6239 11 15.006 MINOR ENSMUSG00000026819 Slc25a25 ENSMUST00000194756 - NO_TRANSLATION retained_intron ENSMUSG00000026819 Slc25a25 ENSMUST00000153782 - NO_TRANSLATION retained_intron ENSMUSG00000026819 Slc25a25 ENSMUST00000153886 ENSMUSP00000141486 TRANSLATION protein_coding stop - 3 112.0 5.0 2.5 0.0 29.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026819 Slc25a25 ENSMUST00000128611 - NO_TRANSLATION retained_intron ENSMUSG00000026819 Slc25a25 ENSMUST00000143092 - NO_TRANSLATION retained_intron ENSMUSG00000026819 Slc25a25 ENSMUST00000028160 ENSMUSP00000028160 TRANSLATION protein_coding - CCDS15915.1 1 514.0 15.0 7.52 8.4 311.0 0.0 -4,-7 0.4787 13 14.988 MINOR ENSMUSG00000026819 Slc25a25 ENSMUST00000136361 ENSMUSP00000115617 TRANSLATION protein_coding stop - 3 263.0 15.0 4.73 0.0 147.6 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000026819 Slc25a25 ENSMUST00000127961 ENSMUSP00000121932 TRANSLATION protein_coding start/stop - 3 184.0 15.0 3.43 0.0 51.7 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000039033 Tasp1 ENSMUST00000046656 ENSMUSP00000039546 TRANSLATION protein_coding - CCDS16802.1 1 420.0 8.0 9.9 22.0 195.4 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000039033 Tasp1 ENSMUST00000124949 - NO_TRANSLATION retained_intron ENSMUSG00000039033 Tasp1 ENSMUST00000110079 ENSMUSP00000105706 TRANSLATION protein_coding - CCDS16802.1 1 420.0 8.0 9.9 22.0 195.4 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000039033 Tasp1 ENSMUST00000099304 ENSMUSP00000096907 TRANSLATION protein_coding - CCDS50731.1 1 383.0 8.0 8.9 3.1 176.2 0.0 -4,-5 0.1124 6 15.25 MINOR ENSMUSG00000027400 Pdyn ENSMUST00000028883 ENSMUSP00000028883 TRANSLATION protein_coding - CCDS38239.1 1 248.0 0.0 0.8 1.8 63.2 0.0 4,-1 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000027400 Pdyn ENSMUST00000130608 ENSMUSP00000114534 TRANSLATION protein_coding stop - 3 84.0 0.0 0.8 0.0 63.2 0.0 4,-1 0.1158 1 -2.0 MINOR ENSMUSG00000027400 Pdyn ENSMUST00000152113 - NO_TRANSLATION retained_intron ENSMUSG00000023210 Lcn9 ENSMUST00000023978 ENSMUSP00000023978 TRANSLATION protein_coding - CCDS15792.1 1 178.0 0.0 4.25 0.0 119.7 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038533 Cbfa2t2 ENSMUST00000135647 - NO_TRANSLATION retained_intron ENSMUSG00000038533 Cbfa2t2 ENSMUST00000154487 - NO_TRANSLATION retained_intron ENSMUSG00000038533 Cbfa2t2 ENSMUST00000109724 ENSMUSP00000105346 TRANSLATION protein_coding stop - 3 221.0 0.0 3.08 0.0 119.8 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000038533 Cbfa2t2 ENSMUST00000155202 ENSMUSP00000116220 TRANSLATION protein_coding start/stop - 3 192.0 0.0 1.0 0.0 24.9 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000038533 Cbfa2t2 ENSMUST00000045270 ENSMUSP00000043087 TRANSLATION protein_coding - CCDS16932.1 1 594.0 8.0 6.23 9.4 279.9 0.0 -4,-7 1.0 4 17.0 PRINCIPAL:4 ENSMUSG00000038533 Cbfa2t2 ENSMUST00000137526 ENSMUSP00000118371 TRANSLATION protein_coding start - 3 299.0 8.0 2.95 0.0 160.1 0.0 -4,-5 0.001 2 -2.0 MINOR ENSMUSG00000038533 Cbfa2t2 ENSMUST00000109725 ENSMUSP00000105347 TRANSLATION protein_coding - CCDS50764.1 1 593.0 8.0 6.03 9.4 279.9 0.0 -4,-7 0.9889 4 16.598 ALTERNATIVE:1 ENSMUSG00000038533 Cbfa2t2 ENSMUST00000099178 ENSMUSP00000096782 TRANSLATION protein_coding - - 1 473.0 0.0 4.63 0.0 248.3 0.0 -4,-7 0.0104 2 4.136 MINOR ENSMUSG00000038533 Cbfa2t2 ENSMUST00000139506 - NO_TRANSLATION retained_intron ENSMUSG00000017418 Arl5b ENSMUST00000129509 ENSMUSP00000117885 TRANSLATION nonsense_mediated_decay start - 3 31.0 7.0 0.75 0.0 29.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017418 Arl5b ENSMUST00000193836 ENSMUSP00000141546 TRANSLATION protein_coding - - 2 34.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000017418 Arl5b ENSMUST00000239125 ENSMUSP00000158934 TRANSLATION protein_coding - CCDS15704.1 - 180.0 17.0 5.66 34.9 222.9 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:4 ENSMUSG00000017418 Arl5b ENSMUST00000193883 ENSMUSP00000141992 TRANSLATION protein_coding start - 3 57.0 6.0 1.5 0.0 43.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000017418 Arl5b ENSMUST00000128682 ENSMUSP00000120178 TRANSLATION nonsense_mediated_decay - - 5 39.0 7.0 1.25 0.0 37.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000017418 Arl5b ENSMUST00000069870 ENSMUSP00000069725 TRANSLATION protein_coding - - 1 179.0 17.0 5.66 34.9 222.9 0.0 -4,-7 0.8855 2 18.0 ALTERNATIVE:1 ENSMUSG00000017418 Arl5b ENSMUST00000017562 ENSMUSP00000017562 TRANSLATION protein_coding - - 1 171.0 17.0 5.325 0.0 218.8 0.0 -4,-5 0.0184 2 11.994 MINOR ENSMUSG00000017418 Arl5b ENSMUST00000192653 - NO_TRANSLATION retained_intron ENSMUSG00000075220 Or5ak23 ENSMUST00000099926 ENSMUSP00000097510 TRANSLATION protein_coding - CCDS16206.1 - 314.0 0.0 1.0 3.3 172.9 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000118600 Gm56303 ENSMUST00000239231 ENSMUSP00000159261 TRANSLATION protein_coding - - - 32.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5648 - 0.0 PRINCIPAL:1 ENSMUSG00000027447 Cst3 ENSMUST00000149691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027447 Cst3 ENSMUST00000144845 ENSMUSP00000117672 TRANSLATION protein_coding stop - 3 102.0 0.0 1.75 0.0 81.0 0.0 4,-1 0.0 4 -2.0 MINOR ENSMUSG00000027447 Cst3 ENSMUST00000028938 ENSMUSP00000028938 TRANSLATION protein_coding - CCDS16852.1 1 140.0 0.0 2.83 2.4 104.6 0.0 4,-1 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000036792 Mbd5 ENSMUST00000196831 ENSMUSP00000142821 TRANSLATION protein_coding start - 5 77.0 0.0 0.0 0.0 25.6 0.0 -4,-6 0.0011 - -2.0 MINOR ENSMUSG00000036792 Mbd5 ENSMUST00000147055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036792 Mbd5 ENSMUST00000122841 ENSMUSP00000119317 TRANSLATION protein_coding start - 1 1067.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0139 - -2.0 MINOR ENSMUSG00000036792 Mbd5 ENSMUST00000196045 ENSMUSP00000143148 TRANSLATION nonsense_mediated_decay start - 5 156.0 0.0 0.0 0.0 30.2 0.0 -4,-5 0.0202 - -2.0 MINOR ENSMUSG00000036792 Mbd5 ENSMUST00000154653 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036792 Mbd5 ENSMUST00000148796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036792 Mbd5 ENSMUST00000199257 ENSMUSP00000143060 TRANSLATION protein_coding start/stop - 5 120.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.0283 - -2.0 MINOR ENSMUSG00000036792 Mbd5 ENSMUST00000147023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036792 Mbd5 ENSMUST00000112754 ENSMUSP00000108374 TRANSLATION protein_coding - CCDS71051.1 5 1498.0 0.0 2.0 12.5 30.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036792 Mbd5 ENSMUST00000197712 ENSMUSP00000143413 TRANSLATION nonsense_mediated_decay start - 5 113.0 0.0 0.0 0.0 25.6 0.0 -4,-5 0.0001 - -2.0 MINOR ENSMUSG00000036792 Mbd5 ENSMUST00000047413 ENSMUSP00000036847 TRANSLATION protein_coding - CCDS38122.1 1 1728.0 0.0 2.0 7.5 30.2 0.0 -4,-5 0.7811 - 13.695 MINOR ENSMUSG00000036792 Mbd5 ENSMUST00000127085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036792 Mbd5 ENSMUST00000112745 ENSMUSP00000108365 TRANSLATION protein_coding - - 1 856.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0419 - 6.0 MINOR ENSMUSG00000036792 Mbd5 ENSMUST00000142250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036792 Mbd5 ENSMUST00000132717 ENSMUSP00000137021 TRANSLATION nonsense_mediated_decay start - 2 435.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0019 - -2.0 MINOR ENSMUSG00000001767 Crnkl1 ENSMUST00000001818 ENSMUSP00000001818 TRANSLATION protein_coding - CCDS16828.1 1 690.0 0.0 12.3 13.4 96.2 0.0 -4,-6 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000001767 Crnkl1 ENSMUST00000147904 - NO_TRANSLATION retained_intron ENSMUSG00000001767 Crnkl1 ENSMUST00000145425 - NO_TRANSLATION retained_intron ENSMUSG00000111711 Or8k39 ENSMUST00000214317 ENSMUSP00000149509 TRANSLATION protein_coding - CCDS16266.1 - 311.0 0.0 1.0 12.5 157.2 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027443 Cst12 ENSMUST00000168443 ENSMUSP00000126008 TRANSLATION protein_coding - CCDS50737.1 1 141.0 0.0 2.75 0.3 33.3 0.0 -3,-5 0.3076 2 8.0 ALTERNATIVE:2 ENSMUSG00000027443 Cst12 ENSMUST00000028932 ENSMUSP00000028932 TRANSLATION protein_coding - - 1 128.0 0.0 2.75 3.0 33.3 0.0 0,-3 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000049149 Or4c10 ENSMUST00000213720 ENSMUSP00000149547 TRANSLATION protein_coding - CCDS16397.1 5 311.0 0.0 1.0 11.5 176.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049149 Or4c10 ENSMUST00000102609 ENSMUSP00000099669 TRANSLATION protein_coding - CCDS16397.1 3 311.0 0.0 1.0 11.5 176.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049149 Or4c10 ENSMUST00000111516 ENSMUSP00000107141 TRANSLATION protein_coding - CCDS16397.1 - 311.0 0.0 1.0 11.5 176.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079009 Zfp1004 ENSMUST00000109926 ENSMUSP00000105552 TRANSLATION protein_coding - - 2 463.0 52.0 1.075 0.0 243.8 0.0 -4,-5 0.5377 - 13.554 PRINCIPAL:1 ENSMUSG00000079009 Zfp1004 ENSMUST00000109929 ENSMUSP00000105555 TRANSLATION protein_coding start - 5 494.0 52.0 1.075 0.0 317.9 0.0 -4,-5 0.1484 - -2.0 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000182657 ENSMUSP00000138785 TRANSLATION protein_coding stop - 1 46.0 0.0 1.0 0.0 23.0 0.0 -,- 0.0 1 -2.0 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000126742 - NO_TRANSLATION retained_intron ENSMUSG00000002107 Celf2 ENSMUST00000249661 ENSMUSP00000159840 TRANSLATION protein_coding - - - 519.0 0.0 8.97 17.6 175.3 0.0 -,- 0.8947 8 10.92 ALTERNATIVE:1 ENSMUSG00000002107 Celf2 ENSMUST00000150624 ENSMUSP00000138297 TRANSLATION protein_coding - CCDS84468.1 1 488.0 0.0 8.64 9.8 175.3 0.0 -,- 0.8036 8 8.38 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000114923 ENSMUSP00000110573 TRANSLATION protein_coding - - 3 159.0 0.0 3.37 0.0 51.7 0.0 -,- 0.0 5 0.5 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000182404 ENSMUSP00000138769 TRANSLATION protein_coding stop - 5 276.0 0.0 3.91 0.0 56.7 0.0 -,- 0.0 4 -2.0 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000182851 ENSMUSP00000138363 TRANSLATION protein_coding - - 1 508.0 0.0 9.095 3.1 175.3 0.0 -,- 0.2271 9 7.68 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000142941 ENSMUSP00000120459 TRANSLATION protein_coding - CCDS50492.1 5 490.0 0.0 8.64 9.7 175.3 0.0 -,- 0.7983 8 8.356 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000182355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002107 Celf2 ENSMUST00000114927 ENSMUSP00000110577 TRANSLATION protein_coding - CCDS84468.1 5 488.0 0.0 8.64 9.8 175.3 0.0 -,- 0.8036 8 8.38 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000123142 ENSMUSP00000138666 TRANSLATION protein_coding stop - 5 92.0 0.0 2.25 0.0 54.2 0.0 -,- 0.0 4 -2.0 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000182706 ENSMUSP00000138764 TRANSLATION protein_coding - CCDS59633.1 1 520.0 0.0 9.51 5.7 175.3 0.0 -,- 0.6672 9 9.132 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000183269 - NO_TRANSLATION retained_intron ENSMUSG00000002107 Celf2 ENSMUST00000114924 ENSMUSP00000110574 TRANSLATION protein_coding - CCDS50494.1 1 526.0 0.0 9.345 13.2 175.3 0.0 -,- 1.0 9 10.61 PRINCIPAL:3 ENSMUSG00000002107 Celf2 ENSMUST00000183209 ENSMUSP00000138355 TRANSLATION protein_coding - CCDS59632.1 1 472.0 0.0 8.51 0.0 135.5 0.0 -,- 0.0121 9 5.252 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000100429 ENSMUSP00000097996 TRANSLATION protein_coding - CCDS50491.1 5 484.0 0.0 8.64 6.8 175.3 0.0 -,- 0.4402 8 7.656 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000002176 ENSMUSP00000002176 TRANSLATION protein_coding - CCDS50491.1 1 484.0 0.0 8.64 6.8 175.3 0.0 -,- 0.4402 8 7.656 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000148321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002107 Celf2 ENSMUST00000182749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002107 Celf2 ENSMUST00000182560 - NO_TRANSLATION retained_intron ENSMUSG00000002107 Celf2 ENSMUST00000170438 ENSMUSP00000130829 TRANSLATION protein_coding - CCDS50493.1 5 478.0 0.0 8.345 1.0 135.5 0.0 -,- 0.0185 9 4.922 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000114934 ENSMUSP00000110584 TRANSLATION protein_coding - CCDS50494.1 1 526.0 0.0 9.345 13.2 175.3 0.0 -,- 1.0 9 10.61 PRINCIPAL:3 ENSMUSG00000002107 Celf2 ENSMUST00000182523 - NO_TRANSLATION retained_intron ENSMUSG00000002107 Celf2 ENSMUST00000138347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002107 Celf2 ENSMUST00000183091 ENSMUSP00000138795 TRANSLATION protein_coding - - 5 460.0 0.0 8.095 0.0 135.5 0.0 -,- 0.0018 9 4.418 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000182037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002107 Celf2 ENSMUST00000137733 ENSMUSP00000138694 TRANSLATION protein_coding stop - 3 134.0 0.0 3.91 0.0 54.2 0.0 -,- 0.0 4 -2.0 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000183984 ENSMUSP00000138974 TRANSLATION nonsense_mediated_decay - - 5 387.0 0.0 6.49 0.0 110.9 0.0 -,- 0.0003 8 -2.0 MINOR ENSMUSG00000002107 Celf2 ENSMUST00000182879 ENSMUSP00000138359 TRANSLATION protein_coding - CCDS79729.1 1 440.0 0.0 7.64 0.8 135.5 0.0 -,- 0.0181 8 3.512 MINOR ENSMUSG00000002105 Slc39a13 ENSMUST00000149430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002105 Slc39a13 ENSMUST00000123685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002105 Slc39a13 ENSMUST00000111436 ENSMUSP00000107063 TRANSLATION protein_coding - CCDS71095.1 1 374.0 0.0 2.264 0.0 178.9 8.0 0,-3 0.2648 3 11.832 MINOR ENSMUSG00000002105 Slc39a13 ENSMUST00000141328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002105 Slc39a13 ENSMUST00000153367 ENSMUSP00000118308 TRANSLATION protein_coding stop - 3 138.0 0.0 0.0 0.0 0.0 3.0 -2,-5 0.0017 1 -2.0 MINOR ENSMUSG00000002105 Slc39a13 ENSMUST00000150348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002105 Slc39a13 ENSMUST00000142943 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002105 Slc39a13 ENSMUST00000079976 ENSMUSP00000078892 TRANSLATION protein_coding - - 1 160.0 0.0 2.264 0.0 136.8 4.0 -4,-5 0.0269 - 9.306 MINOR ENSMUSG00000002105 Slc39a13 ENSMUST00000133047 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002105 Slc39a13 ENSMUST00000130252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002105 Slc39a13 ENSMUST00000073575 ENSMUSP00000073263 TRANSLATION protein_coding - CCDS16424.1 1 361.0 0.0 2.264 8.4 181.7 8.0 0,-3 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000027091 Zc3h15 ENSMUST00000134789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027091 Zc3h15 ENSMUST00000125422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027091 Zc3h15 ENSMUST00000140086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027091 Zc3h15 ENSMUST00000130948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027091 Zc3h15 ENSMUST00000145099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027091 Zc3h15 ENSMUST00000142756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027091 Zc3h15 ENSMUST00000081591 ENSMUSP00000080301 TRANSLATION protein_coding - CCDS16180.1 1 426.0 8.0 0.0 2.3 110.7 0.0 -4,-5 1.0 16 13.0 PRINCIPAL:1 ENSMUSG00000035238 Kcnk15 ENSMUST00000044798 ENSMUSP00000048326 TRANSLATION protein_coding - CCDS17017.1 1 343.0 0.0 2.0 0.0 130.0 5.0 -4,-7 0.4766 - 8.0 ALTERNATIVE:2 ENSMUSG00000035238 Kcnk15 ENSMUST00000109396 ENSMUSP00000105023 TRANSLATION protein_coding - - 1 324.0 0.0 2.0 0.8 130.0 5.0 2,-3 0.8564 - 8.0 PRINCIPAL:2 ENSMUSG00000026988 Wdsub1 ENSMUST00000133809 ENSMUSP00000114814 TRANSLATION protein_coding start - 3 183.0 0.0 2.3 0.0 52.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026988 Wdsub1 ENSMUST00000131285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026988 Wdsub1 ENSMUST00000140475 ENSMUSP00000114811 TRANSLATION protein_coding stop - 2 194.0 0.0 1.38 0.0 88.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026988 Wdsub1 ENSMUST00000138519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026988 Wdsub1 ENSMUST00000127004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026988 Wdsub1 ENSMUST00000102751 ENSMUSP00000099812 TRANSLATION protein_coding - CCDS50589.1 1 423.0 0.0 5.11 1.0 243.8 0.0 -4,-5 0.1337 3 6.864 MINOR ENSMUSG00000026988 Wdsub1 ENSMUST00000128671 ENSMUSP00000121242 TRANSLATION protein_coding stop - 5 194.0 0.0 1.38 0.0 88.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026988 Wdsub1 ENSMUST00000144823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026988 Wdsub1 ENSMUST00000144343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026988 Wdsub1 ENSMUST00000139689 ENSMUSP00000121438 TRANSLATION protein_coding start/stop - 3 241.0 0.0 3.562 0.0 126.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026988 Wdsub1 ENSMUST00000140852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026988 Wdsub1 ENSMUST00000028368 ENSMUSP00000028368 TRANSLATION protein_coding - CCDS16055.1 1 474.0 0.0 5.71 12.5 309.4 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000038180 Spag4 ENSMUST00000137966 ENSMUSP00000118715 TRANSLATION protein_coding stop - 3 210.0 0.0 1.52 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038180 Spag4 ENSMUST00000038860 ENSMUSP00000036484 TRANSLATION protein_coding - CCDS50777.1 1 443.0 0.0 3.76 5.5 144.6 0.0 -4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038180 Spag4 ENSMUST00000125996 - NO_TRANSLATION retained_intron ENSMUSG00000038180 Spag4 ENSMUST00000131144 ENSMUSP00000120079 TRANSLATION nonsense_mediated_decay start - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000038180 Spag4 ENSMUST00000136765 - NO_TRANSLATION retained_intron ENSMUSG00000038180 Spag4 ENSMUST00000149139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038180 Spag4 ENSMUST00000138178 ENSMUSP00000121781 TRANSLATION nonsense_mediated_decay start - 3 78.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000038180 Spag4 ENSMUST00000133511 - NO_TRANSLATION retained_intron ENSMUSG00000047149 Or5j3 ENSMUST00000217166 ENSMUSP00000149344 TRANSLATION protein_coding - CCDS16250.1 5 312.0 0.0 1.0 17.6 172.1 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047149 Or5j3 ENSMUST00000215090 ENSMUSP00000149051 TRANSLATION protein_coding - CCDS16250.1 5 312.0 0.0 1.0 17.6 172.1 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047149 Or5j3 ENSMUST00000054746 ENSMUSP00000058454 TRANSLATION protein_coding - CCDS16250.1 - 312.0 0.0 1.0 17.6 172.1 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000017760 Ctsa ENSMUST00000103092 ENSMUSP00000099381 TRANSLATION protein_coding - CCDS17061.1 5 492.0 10.0 12.575 7.0 459.7 0.0 0,-4 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000017760 Ctsa ENSMUST00000155061 - NO_TRANSLATION retained_intron ENSMUSG00000017760 Ctsa ENSMUST00000128596 - NO_TRANSLATION retained_intron ENSMUSG00000017760 Ctsa ENSMUST00000133077 - NO_TRANSLATION retained_intron ENSMUSG00000017760 Ctsa ENSMUST00000133502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017760 Ctsa ENSMUST00000130959 - NO_TRANSLATION retained_intron ENSMUSG00000017760 Ctsa ENSMUST00000152721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017760 Ctsa ENSMUST00000151493 ENSMUSP00000116210 TRANSLATION protein_coding stop - 3 29.0 0.0 0.165 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017760 Ctsa ENSMUST00000140213 - NO_TRANSLATION retained_intron ENSMUSG00000017760 Ctsa ENSMUST00000143780 ENSMUSP00000123413 TRANSLATION protein_coding start/stop - 3 219.0 4.0 5.245 0.0 194.3 0.0 1,-2 0.0 2 -2.0 MINOR ENSMUSG00000017760 Ctsa ENSMUST00000146525 - NO_TRANSLATION retained_intron ENSMUSG00000017760 Ctsa ENSMUST00000127650 ENSMUSP00000115514 TRANSLATION protein_coding stop - 5 215.0 7.0 5.165 0.0 260.0 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000017760 Ctsa ENSMUST00000144580 - NO_TRANSLATION retained_intron ENSMUSG00000017760 Ctsa ENSMUST00000143293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017760 Ctsa ENSMUST00000103093 ENSMUSP00000099382 TRANSLATION protein_coding - CCDS17062.1 1 474.0 10.0 12.575 0.7 459.7 0.0 4,-1 0.3984 13 18.0 MINOR ENSMUSG00000017760 Ctsa ENSMUST00000147883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026866 Kynu ENSMUST00000112826 ENSMUSP00000108445 TRANSLATION protein_coding - - 1 427.0 10.0 10.0 1.0 48.3 0.0 -4,-5 0.0976 11 16.002 MINOR ENSMUSG00000026866 Kynu ENSMUST00000148855 - NO_TRANSLATION retained_intron ENSMUSG00000026866 Kynu ENSMUST00000240759 ENSMUSP00000159520 TRANSLATION protein_coding - - - 464.0 10.0 11.0 15.9 48.3 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000026866 Kynu ENSMUST00000050511 ENSMUSP00000061775 TRANSLATION protein_coding - - 1 323.0 10.0 7.75 0.0 34.3 0.0 -4,-5 0.0033 7 10.26 MINOR ENSMUSG00000026866 Kynu ENSMUST00000138540 - NO_TRANSLATION retained_intron ENSMUSG00000026866 Kynu ENSMUST00000130968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026866 Kynu ENSMUST00000028223 ENSMUSP00000028223 TRANSLATION protein_coding - - 1 464.0 10.0 11.0 15.9 48.3 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000032852 Rspo4 ENSMUST00000042217 ENSMUSP00000041578 TRANSLATION protein_coding - CCDS38272.1 1 228.0 0.0 2.6 2.5 152.4 0.0 2,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000074678 Defb25 ENSMUST00000099203 ENSMUSP00000096809 TRANSLATION protein_coding - CCDS38280.1 1 71.0 0.0 1.1 0.1 38.7 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000090093 Gm14399 ENSMUST00000109059 ENSMUSP00000104687 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 74.4 0.0 -4,-5 0.0 - 3.198 MINOR ENSMUSG00000090093 Gm14399 ENSMUST00000109060 ENSMUSP00000104688 TRANSLATION protein_coding - - 3 610.0 75.0 3.15 0.1 472.1 0.0 -4,-5 0.8301 - 18.0 PRINCIPAL:1 ENSMUSG00000090093 Gm14399 ENSMUST00000109062 ENSMUSP00000104690 TRANSLATION protein_coding - - 5 204.0 0.0 1.8 0.0 74.4 0.0 -4,-5 0.0 - 3.3 MINOR ENSMUSG00000039128 Cdc123 ENSMUST00000138312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039128 Cdc123 ENSMUST00000130142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039128 Cdc123 ENSMUST00000124287 - NO_TRANSLATION retained_intron ENSMUSG00000039128 Cdc123 ENSMUST00000152998 - NO_TRANSLATION retained_intron ENSMUSG00000039128 Cdc123 ENSMUST00000152519 - NO_TRANSLATION retained_intron ENSMUSG00000039128 Cdc123 ENSMUST00000043864 ENSMUSP00000043033 TRANSLATION protein_coding - CCDS15666.1 1 336.0 2.0 4.63112 20.0 356.5 0.0 -4,-7 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000039128 Cdc123 ENSMUST00000124662 - NO_TRANSLATION retained_intron ENSMUSG00000039128 Cdc123 ENSMUST00000128467 ENSMUSP00000141306 TRANSLATION protein_coding start - 5 134.0 0.0 2.304 0.0 125.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039128 Cdc123 ENSMUST00000150876 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026991 Pkp4 ENSMUST00000126749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026991 Pkp4 ENSMUST00000124127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026991 Pkp4 ENSMUST00000183625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026991 Pkp4 ENSMUST00000168631 ENSMUSP00000129836 TRANSLATION protein_coding - CCDS50588.1 1 1147.0 0.0 5.46 12.2 93.6 0.0 -4,-5 0.9635 33 10.922 ALTERNATIVE:1 ENSMUSG00000026991 Pkp4 ENSMUST00000124725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026991 Pkp4 ENSMUST00000037903 ENSMUSP00000042249 TRANSLATION protein_coding - - 5 1163.0 0.0 5.46 0.3 93.6 0.0 -4,-5 0.2879 33 8.0 MINOR ENSMUSG00000026991 Pkp4 ENSMUST00000102754 ENSMUSP00000099815 TRANSLATION protein_coding - CCDS16052.1 1 1190.0 0.0 5.46 12.5 93.6 0.0 -4,-5 1.0 34 11.0 PRINCIPAL:3 ENSMUSG00000026991 Pkp4 ENSMUST00000151452 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026991 Pkp4 ENSMUST00000123908 ENSMUSP00000122152 TRANSLATION protein_coding stop - 1 803.0 0.0 3.8 0.0 70.3 0.0 -4,-5 0.0099 26 -2.0 MINOR ENSMUSG00000026991 Pkp4 ENSMUST00000122888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026991 Pkp4 ENSMUST00000183359 ENSMUSP00000139141 TRANSLATION nonsense_mediated_decay - - 5 215.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000026991 Pkp4 ENSMUST00000184332 ENSMUSP00000139161 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026991 Pkp4 ENSMUST00000184705 ENSMUSP00000138895 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026991 Pkp4 ENSMUST00000112577 ENSMUSP00000108196 TRANSLATION protein_coding - - 5 849.0 0.0 5.46 4.0 93.6 0.0 -4,-5 0.2701 23 8.783 MINOR ENSMUSG00000040164 Kcns1 ENSMUST00000045196 ENSMUSP00000038901 TRANSLATION protein_coding - CCDS17022.1 1 497.0 0.0 0.765 4.0 233.1 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000016998 Svs4 ENSMUST00000017142 ENSMUSP00000017142 TRANSLATION protein_coding - CCDS17029.1 1 113.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.9444 10 0.0 PRINCIPAL:1 ENSMUSG00000096554 Or4k38 ENSMUST00000099618 ENSMUSP00000097213 TRANSLATION protein_coding - CCDS16522.1 - 305.0 0.0 1.0 8.0 158.9 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044338 Aplnr ENSMUST00000184728 ENSMUSP00000139142 TRANSLATION protein_coding start - 5 88.0 0.0 1.0 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000044338 Aplnr ENSMUST00000057019 ENSMUSP00000053638 TRANSLATION protein_coding - CCDS16201.1 - 377.0 0.0 2.4 8.1 202.1 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000068394 Cep152 ENSMUST00000089776 ENSMUSP00000087208 TRANSLATION protein_coding - CCDS38229.1 1 1736.0 0.0 1.8 0.1 0.0 0.0 -4,-5 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000075185 Or8k25 ENSMUST00000099889 ENSMUSP00000097474 TRANSLATION protein_coding - CCDS50626.1 - 313.0 0.0 1.0 11.0 173.9 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027230 Creb3l1 ENSMUST00000028663 ENSMUSP00000028663 TRANSLATION protein_coding - CCDS38181.1 1 520.0 0.0 2.85 9.9 55.6 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000049057 Or4c10b ENSMUST00000111519 ENSMUSP00000107144 TRANSLATION protein_coding - CCDS16396.1 2 309.0 0.0 1.0 12.5 167.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049057 Or4c10b ENSMUST00000060795 ENSMUSP00000056439 TRANSLATION protein_coding - CCDS16396.1 - 309.0 0.0 1.0 12.5 167.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027430 Dtd1 ENSMUST00000145814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027430 Dtd1 ENSMUST00000137406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027430 Dtd1 ENSMUST00000125683 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027430 Dtd1 ENSMUST00000028917 ENSMUSP00000028917 TRANSLATION protein_coding - CCDS16824.1 1 209.0 3.0 3.5 30.0 177.1 0.0 -4,-2 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000027430 Dtd1 ENSMUST00000145602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038400 Pmepa1 ENSMUST00000139306 ENSMUSP00000115534 TRANSLATION protein_coding stop - 3 238.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0604 - -2.0 MINOR ENSMUSG00000038400 Pmepa1 ENSMUST00000036248 ENSMUSP00000039950 TRANSLATION protein_coding - CCDS38350.1 1 274.0 0.0 0.0 0.4 0.0 1.0 -4,-2 0.9027 - 0.0 PRINCIPAL:1 ENSMUSG00000038400 Pmepa1 ENSMUST00000124124 - NO_TRANSLATION retained_intron ENSMUSG00000026933 Camsap1 ENSMUST00000183461 ENSMUSP00000139028 TRANSLATION protein_coding - - 5 1581.0 0.0 2.0 0.4 385.8 0.0 -4,-5 0.4941 32 8.0 ALTERNATIVE:2 ENSMUSG00000026933 Camsap1 ENSMUST00000148146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026933 Camsap1 ENSMUST00000143977 ENSMUSP00000139100 TRANSLATION nonsense_mediated_decay start - 5 112.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026933 Camsap1 ENSMUST00000114167 ENSMUSP00000109804 TRANSLATION protein_coding - CCDS50538.2 5 1582.0 0.0 2.0 0.4 393.7 0.0 -4,-5 1.0 32 8.0 PRINCIPAL:2 ENSMUSG00000026933 Camsap1 ENSMUST00000134970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026933 Camsap1 ENSMUST00000139937 ENSMUSP00000139305 TRANSLATION nonsense_mediated_decay - - 5 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000026933 Camsap1 ENSMUST00000127823 ENSMUSP00000138910 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026933 Camsap1 ENSMUST00000134882 ENSMUSP00000117203 TRANSLATION protein_coding stop - 5 1077.0 0.0 0.0 0.0 209.7 0.0 -4,-5 0.0142 21 -2.0 MINOR ENSMUSG00000026933 Camsap1 ENSMUST00000142028 ENSMUSP00000119296 TRANSLATION protein_coding start/stop - 5 164.0 0.0 0.0 0.0 90.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000026933 Camsap1 ENSMUST00000134054 ENSMUSP00000121689 TRANSLATION protein_coding start/stop - 3 265.0 0.0 0.0 0.0 122.5 0.0 -4,-7 0.0001 5 -2.0 MINOR ENSMUSG00000026933 Camsap1 ENSMUST00000151593 ENSMUSP00000123541 TRANSLATION protein_coding start/stop - 5 177.0 0.0 0.0 0.0 122.5 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000036890 Gtdc1 ENSMUST00000049051 ENSMUSP00000038119 TRANSLATION protein_coding start - 1 386.0 0.0 4.098 0.0 193.1 0.0 -3,-6 0.0012 7 -2.0 MINOR ENSMUSG00000036890 Gtdc1 ENSMUST00000112810 ENSMUSP00000108429 TRANSLATION protein_coding - CCDS71050.1 1 445.0 0.0 5.898 0.0 276.4 0.0 -4,-6 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000036890 Gtdc1 ENSMUST00000146694 ENSMUSP00000119639 TRANSLATION protein_coding stop - 3 142.0 0.0 1.8 0.0 158.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000036890 Gtdc1 ENSMUST00000133442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036890 Gtdc1 ENSMUST00000130991 ENSMUSP00000116839 TRANSLATION protein_coding stop - 5 238.0 0.0 2.048 0.0 67.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000036890 Gtdc1 ENSMUST00000148786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036890 Gtdc1 ENSMUST00000129240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036890 Gtdc1 ENSMUST00000134813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036890 Gtdc1 ENSMUST00000143333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036890 Gtdc1 ENSMUST00000143766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036890 Gtdc1 ENSMUST00000100127 ENSMUSP00000097703 TRANSLATION protein_coding - - 1 106.0 0.0 0.8 0.0 67.1 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000036890 Gtdc1 ENSMUST00000148279 ENSMUSP00000120593 TRANSLATION protein_coding stop - 5 191.0 0.0 2.6 0.0 241.7 0.0 -4,-6 0.0114 4 -2.0 MINOR ENSMUSG00000036890 Gtdc1 ENSMUST00000154744 ENSMUSP00000119239 TRANSLATION protein_coding stop - 2 115.0 0.0 1.8 0.0 158.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000002550 Uck1 ENSMUST00000002625 ENSMUSP00000002625 TRANSLATION protein_coding - CCDS15909.2 1 283.0 18.0 6.45 0.1 171.5 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000002550 Uck1 ENSMUST00000133804 - NO_TRANSLATION retained_intron ENSMUSG00000002550 Uck1 ENSMUST00000138133 ENSMUSP00000125350 TRANSLATION protein_coding start - 3 208.0 9.0 4.25 0.0 137.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002550 Uck1 ENSMUST00000142797 - NO_TRANSLATION retained_intron ENSMUSG00000002550 Uck1 ENSMUST00000134351 - NO_TRANSLATION retained_intron ENSMUSG00000017861 Mybl2 ENSMUST00000018005 ENSMUSP00000018005 TRANSLATION protein_coding - CCDS17006.1 1 704.0 0.0 5.05 4.6 375.5 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000017861 Mybl2 ENSMUST00000133322 - NO_TRANSLATION retained_intron ENSMUSG00000017861 Mybl2 ENSMUST00000142729 ENSMUSP00000114710 TRANSLATION protein_coding start/stop - 5 263.0 0.0 0.0 0.0 190.6 0.0 -4,-6 0.0001 - -2.0 MINOR ENSMUSG00000017861 Mybl2 ENSMUST00000137620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017861 Mybl2 ENSMUST00000138414 - NO_TRANSLATION retained_intron ENSMUSG00000023330 Dtwd1 ENSMUST00000170908 ENSMUSP00000127662 TRANSLATION protein_coding - CCDS16682.1 1 304.0 0.0 0.29 6.4 150.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000023330 Dtwd1 ENSMUST00000110437 ENSMUSP00000106067 TRANSLATION protein_coding - CCDS16682.1 1 304.0 0.0 0.29 6.4 150.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000074736 Syndig1 ENSMUST00000144179 ENSMUSP00000116877 TRANSLATION protein_coding stop - 3 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000074736 Syndig1 ENSMUST00000137280 ENSMUSP00000122838 TRANSLATION protein_coding stop - 3 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000074736 Syndig1 ENSMUST00000109934 ENSMUSP00000105560 TRANSLATION protein_coding - CCDS38262.1 5 258.0 0.0 0.465 17.5 67.4 2.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000074736 Syndig1 ENSMUST00000109935 ENSMUSP00000105561 TRANSLATION protein_coding - CCDS38262.1 5 258.0 0.0 0.465 17.5 67.4 2.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000074736 Syndig1 ENSMUST00000140870 ENSMUSP00000114499 TRANSLATION protein_coding stop - 2 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000074736 Syndig1 ENSMUST00000149705 ENSMUSP00000122327 TRANSLATION protein_coding stop - 2 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027636 Sla2 ENSMUST00000029164 ENSMUSP00000029164 TRANSLATION protein_coding - CCDS38302.1 1 259.0 0.0 4.97 2.4 97.3 0.0 -4,-1 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000027636 Sla2 ENSMUST00000109561 ENSMUSP00000105189 TRANSLATION protein_coding - CCDS38302.1 1 259.0 0.0 4.97 2.4 97.3 0.0 -4,-1 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000044405 Adig ENSMUST00000109484 ENSMUSP00000105110 TRANSLATION protein_coding - - 2 56.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000044405 Adig ENSMUST00000148187 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044405 Adig ENSMUST00000059889 ENSMUSP00000051732 TRANSLATION protein_coding - CCDS16990.1 1 80.0 0.0 1.0 0.4 145.9 0.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037703 Lzts3 ENSMUST00000089561 ENSMUSP00000086990 TRANSLATION protein_coding - CCDS50714.1 5 700.0 0.0 0.0 4.0 204.4 0.0 -4,-5 1.0 16 8.0 PRINCIPAL:1 ENSMUSG00000037703 Lzts3 ENSMUST00000045761 ENSMUSP00000037109 TRANSLATION protein_coding - CCDS50714.1 5 700.0 0.0 0.0 4.0 204.4 0.0 -4,-5 1.0 16 8.0 PRINCIPAL:1 ENSMUSG00000037703 Lzts3 ENSMUST00000110260 ENSMUSP00000105889 TRANSLATION protein_coding - CCDS71145.1 1 586.0 0.0 0.0 0.0 204.4 0.0 -4,-5 0.1596 11 6.0 MINOR ENSMUSG00000027429 Sec23b ENSMUST00000146487 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027429 Sec23b ENSMUST00000155258 ENSMUSP00000123690 TRANSLATION protein_coding stop - 3 58.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027429 Sec23b ENSMUST00000028916 ENSMUSP00000028916 TRANSLATION protein_coding - CCDS16822.1 1 767.0 4.0 16.7225 36.9 580.6 0.0 -4,-5 1.0 24 20.0 PRINCIPAL:1 ENSMUSG00000027429 Sec23b ENSMUST00000149697 ENSMUSP00000122819 TRANSLATION protein_coding stop - 2 122.0 4.0 2.75 0.0 58.3 0.0 -4,-5 0.0005 3 -2.0 MINOR ENSMUSG00000027429 Sec23b ENSMUST00000143573 ENSMUSP00000120972 TRANSLATION protein_coding stop - 2 278.0 4.0 5.475 0.0 186.7 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000027429 Sec23b ENSMUST00000143921 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027429 Sec23b ENSMUST00000155876 ENSMUSP00000122884 TRANSLATION protein_coding stop - 3 138.0 4.0 3.25 0.0 58.3 0.0 -4,-5 0.0005 3 -2.0 MINOR ENSMUSG00000027429 Sec23b ENSMUST00000128210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075079 Or4a76 ENSMUST00000099769 ENSMUSP00000097357 TRANSLATION protein_coding - CCDS16388.1 - 318.0 0.0 1.0 1.5 159.1 4.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075079 Or4a76 ENSMUST00000216124 ENSMUSP00000149072 TRANSLATION protein_coding - CCDS16388.1 5 318.0 0.0 1.0 1.5 159.1 4.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000053164 Gpr21 ENSMUST00000159737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053164 Gpr21 ENSMUST00000065441 ENSMUSP00000066449 TRANSLATION protein_coding - CCDS16004.1 1 349.0 0.0 0.8 17.3 129.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000068647 Or4f54 ENSMUST00000214669 ENSMUSP00000149106 TRANSLATION nonsense_mediated_decay - CCDS16518.1 5 313.0 0.0 1.0 10.5 147.1 6.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000068647 Or4f54 ENSMUST00000213516 ENSMUSP00000150489 TRANSLATION nonsense_mediated_decay - CCDS16518.1 5 313.0 0.0 1.0 10.5 147.1 6.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000068647 Or4f54 ENSMUST00000213727 ENSMUSP00000150993 TRANSLATION protein_coding - CCDS16518.1 5 313.0 0.0 1.0 10.5 147.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068647 Or4f54 ENSMUST00000215210 ENSMUSP00000149635 TRANSLATION protein_coding - CCDS16518.1 5 313.0 0.0 1.0 10.5 147.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068647 Or4f54 ENSMUST00000216229 ENSMUSP00000150587 TRANSLATION protein_coding - CCDS16518.1 5 313.0 0.0 1.0 10.5 147.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068647 Or4f54 ENSMUST00000090330 ENSMUSP00000087802 TRANSLATION protein_coding - CCDS16518.1 - 313.0 0.0 1.0 10.5 147.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079005 Gm14147 ENSMUST00000109888 ENSMUSP00000105514 TRANSLATION protein_coding - - 5 640.0 17.0 0.4 0.0 229.5 0.0 -4,-5 0.8288 - 18.0 PRINCIPAL:1 ENSMUSG00000026841 Fibcd1 ENSMUST00000028188 ENSMUSP00000028188 TRANSLATION protein_coding - CCDS50564.1 1 459.0 8.0 4.2 12.0 256.2 0.0 -4,-7 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000050043 Tmx2 ENSMUST00000053664 ENSMUSP00000059582 TRANSLATION protein_coding - CCDS16188.1 1 295.0 0.0 6.8 20.0 43.8 1.0 -2,-4 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000050043 Tmx2 ENSMUST00000111665 ENSMUSP00000107294 TRANSLATION protein_coding - CCDS16188.1 1 295.0 0.0 6.8 20.0 43.8 1.0 -2,-4 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000050043 Tmx2 ENSMUST00000111664 ENSMUSP00000107293 TRANSLATION protein_coding - CCDS71087.1 3 257.0 0.0 5.8 1.7 43.8 1.0 -2,-3 0.1601 6 10.15 MINOR ENSMUSG00000050043 Tmx2 ENSMUST00000152149 ENSMUSP00000115745 TRANSLATION protein_coding stop - 3 80.0 0.0 1.5 0.0 0.0 1.0 -2,-4 0.0 2 -2.0 MINOR ENSMUSG00000050043 Tmx2 ENSMUST00000138529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050043 Tmx2 ENSMUST00000123772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017737 Mmp9 ENSMUST00000134382 - NO_TRANSLATION retained_intron ENSMUSG00000017737 Mmp9 ENSMUST00000017881 ENSMUSP00000017881 TRANSLATION protein_coding - CCDS17066.1 1 730.0 24.0 11.45 0.0 522.8 0.0 4,-1 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000017737 Mmp9 ENSMUST00000144917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017737 Mmp9 ENSMUST00000137626 ENSMUSP00000120628 TRANSLATION protein_coding stop - 3 67.0 0.0 1.25 0.0 0.0 0.0 4,-1 0.0012 - -2.0 MINOR ENSMUSG00000027331 Knstrn ENSMUST00000126045 ENSMUSP00000122844 TRANSLATION protein_coding start/stop - 2 218.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0201 4 -2.0 MINOR ENSMUSG00000027331 Knstrn ENSMUST00000134579 ENSMUSP00000123065 TRANSLATION nonsense_mediated_decay start - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0084 - -2.0 MINOR ENSMUSG00000027331 Knstrn ENSMUST00000176463 ENSMUSP00000135549 TRANSLATION nonsense_mediated_decay start - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0084 - -2.0 MINOR ENSMUSG00000027331 Knstrn ENSMUST00000134661 ENSMUSP00000115860 TRANSLATION protein_coding - CCDS16585.1 1 312.0 0.0 0.0 7.5 0.0 0.0 -4,-5 1.0 4 2.0 PRINCIPAL:1 ENSMUSG00000027331 Knstrn ENSMUST00000028803 ENSMUSP00000028803 TRANSLATION protein_coding start - 2 188.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0102 3 -2.0 MINOR ENSMUSG00000027331 Knstrn ENSMUST00000148877 ENSMUSP00000135008 TRANSLATION nonsense_mediated_decay start - 2 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0118 - -2.0 MINOR ENSMUSG00000027331 Knstrn ENSMUST00000110842 ENSMUSP00000106466 TRANSLATION protein_coding - - 3 234.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0268 4 0.0 MINOR ENSMUSG00000027331 Knstrn ENSMUST00000177103 ENSMUSP00000134898 TRANSLATION nonsense_mediated_decay start - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0084 - -2.0 MINOR ENSMUSG00000027331 Knstrn ENSMUST00000123104 ENSMUSP00000135422 TRANSLATION nonsense_mediated_decay start - 5 186.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.013 4 -2.0 MINOR ENSMUSG00000027314 Dll4 ENSMUST00000127102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027314 Dll4 ENSMUST00000102517 ENSMUSP00000099575 TRANSLATION protein_coding - CCDS16600.1 1 686.0 17.0 6.7 4.5 279.5 0.0 2,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000098387 Pet117 ENSMUST00000183618 ENSMUSP00000139043 TRANSLATION protein_coding - CCDS71155.1 2 80.0 0.0 2.0 13.3 81.8 0.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000109865 Hspa14 ENSMUST00000129505 - NO_TRANSLATION retained_intron ENSMUSG00000109865 Hspa14 ENSMUST00000148167 - NO_TRANSLATION retained_intron ENSMUSG00000109865 Hspa14 ENSMUST00000156008 - NO_TRANSLATION retained_intron ENSMUSG00000109865 Hspa14 ENSMUST00000139485 - NO_TRANSLATION retained_intron ENSMUSG00000109865 Hspa14 ENSMUST00000027961 ENSMUSP00000027961 TRANSLATION protein_coding - CCDS15653.1 1 509.0 21.0 7.85 26.8 373.8 0.0 -4,-7 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000109865 Hspa14 ENSMUST00000135157 - NO_TRANSLATION retained_intron ENSMUSG00000026976 Pax8 ENSMUST00000149860 - NO_TRANSLATION retained_intron ENSMUSG00000026976 Pax8 ENSMUST00000028355 ENSMUSP00000028355 TRANSLATION protein_coding - CCDS15738.1 1 457.0 0.0 3.33 9.5 424.4 0.0 -4,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000026976 Pax8 ENSMUST00000133746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026976 Pax8 ENSMUST00000153601 ENSMUSP00000134343 TRANSLATION protein_coding - - 5 322.0 0.0 3.33 3.1 241.3 0.0 -4,-2 0.156 2 6.741 MINOR ENSMUSG00000026976 Pax8 ENSMUST00000152614 - NO_TRANSLATION retained_intron ENSMUSG00000026976 Pax8 ENSMUST00000153535 ENSMUSP00000120319 TRANSLATION protein_coding stop - 3 169.0 0.0 3.33 0.0 238.3 0.0 -4,-2 0.0332 1 -2.0 MINOR ENSMUSG00000026976 Pax8 ENSMUST00000149294 ENSMUSP00000115194 TRANSLATION protein_coding stop - 5 412.0 0.0 3.33 0.0 241.3 0.0 -4,-2 0.0338 3 -2.0 MINOR ENSMUSG00000026976 Pax8 ENSMUST00000136228 ENSMUSP00000133316 TRANSLATION protein_coding stop - 5 404.0 0.0 3.33 0.0 327.1 0.0 -4,-2 0.0247 3 -2.0 MINOR ENSMUSG00000074923 Pak6 ENSMUST00000132843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074923 Pak6 ENSMUST00000132577 - NO_TRANSLATION retained_intron ENSMUSG00000074923 Pak6 ENSMUST00000110853 ENSMUSP00000106477 TRANSLATION protein_coding - CCDS16580.1 1 682.0 18.0 5.8 9.2 284.6 0.0 -4,-7 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000074923 Pak6 ENSMUST00000099557 ENSMUSP00000097153 TRANSLATION protein_coding - CCDS16580.1 1 682.0 18.0 5.8 9.2 284.6 0.0 -4,-7 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000074923 Pak6 ENSMUST00000152550 - NO_TRANSLATION retained_intron ENSMUSG00000039678 Tbc1d13 ENSMUST00000134013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039678 Tbc1d13 ENSMUST00000125142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039678 Tbc1d13 ENSMUST00000136183 ENSMUSP00000120228 TRANSLATION nonsense_mediated_decay - - 3 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039678 Tbc1d13 ENSMUST00000132324 - NO_TRANSLATION retained_intron ENSMUSG00000039678 Tbc1d13 ENSMUST00000150879 - NO_TRANSLATION retained_intron ENSMUSG00000039678 Tbc1d13 ENSMUST00000131261 ENSMUSP00000120763 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039678 Tbc1d13 ENSMUST00000129789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039678 Tbc1d13 ENSMUST00000044556 ENSMUSP00000048426 TRANSLATION protein_coding - CCDS15871.1 1 400.0 0.0 1.919 28.9 115.1 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000042272 Sestd1 ENSMUST00000102660 ENSMUSP00000099721 TRANSLATION protein_coding - CCDS16163.1 5 696.0 0.0 0.0 24.9 28.2 0.0 -4,-7 1.0 16 10.0 PRINCIPAL:1 ENSMUSG00000042272 Sestd1 ENSMUST00000102659 ENSMUSP00000099720 TRANSLATION protein_coding - CCDS16163.1 1 696.0 0.0 0.0 24.9 28.2 0.0 -4,-7 1.0 16 10.0 PRINCIPAL:1 ENSMUSG00000042272 Sestd1 ENSMUST00000145366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042272 Sestd1 ENSMUST00000139021 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034723 Tmx4 ENSMUST00000110120 ENSMUSP00000105747 TRANSLATION protein_coding - - 1 183.0 8.0 3.9 0.0 47.7 0.0 3,-2 0.0735 6 14.7 MINOR ENSMUSG00000034723 Tmx4 ENSMUST00000038228 ENSMUSP00000045154 TRANSLATION protein_coding - CCDS16784.1 1 335.0 8.0 5.55 1.5 47.7 0.0 3,-2 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000034723 Tmx4 ENSMUST00000110119 ENSMUSP00000105746 TRANSLATION protein_coding - - 2 166.0 5.0 1.8 0.0 36.2 0.0 3,-2 0.0019 1 8.304 MINOR ENSMUSG00000034723 Tmx4 ENSMUST00000137377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045838 Ccdc9b ENSMUST00000059997 ENSMUSP00000051853 TRANSLATION protein_coding - - 1 500.0 0.0 0.0 1.0 206.7 0.0 -4,-5 0.7518 8 6.0 PRINCIPAL:1 ENSMUSG00000045838 Ccdc9b ENSMUST00000151270 - NO_TRANSLATION retained_intron ENSMUSG00000026851 BC005624 ENSMUST00000152007 - NO_TRANSLATION retained_intron ENSMUSG00000026851 BC005624 ENSMUST00000028205 ENSMUSP00000028205 TRANSLATION protein_coding - CCDS15892.1 1 289.0 0.0 0.0 25.0 105.2 0.0 -4,-7 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000026851 BC005624 ENSMUST00000156325 - NO_TRANSLATION retained_intron ENSMUSG00000075218 Or5ak25 ENSMUST00000099924 ENSMUSP00000097508 TRANSLATION protein_coding - CCDS16208.1 - 315.0 0.0 1.0 5.0 169.2 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075218 Or5ak25 ENSMUST00000216933 ENSMUSP00000149952 TRANSLATION protein_coding - CCDS16208.1 5 315.0 0.0 1.0 5.0 169.2 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026987 Baz2b ENSMUST00000153711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026987 Baz2b ENSMUST00000130637 ENSMUSP00000119690 TRANSLATION protein_coding start/stop - 3 253.0 6.0 1.0 0.0 33.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026987 Baz2b ENSMUST00000147476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026987 Baz2b ENSMUST00000153136 ENSMUSP00000118981 TRANSLATION protein_coding start/stop - 3 296.0 0.0 0.0 0.0 28.3 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000026987 Baz2b ENSMUST00000137480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026987 Baz2b ENSMUST00000138089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026987 Baz2b ENSMUST00000152639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026987 Baz2b ENSMUST00000151756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026987 Baz2b ENSMUST00000135722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026987 Baz2b ENSMUST00000090925 ENSMUSP00000088443 TRANSLATION protein_coding - CCDS16056.1 5 2123.0 7.0 2.0 0.0 222.0 0.0 -4,-6 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000026987 Baz2b ENSMUST00000112550 ENSMUSP00000108169 TRANSLATION protein_coding - CCDS16056.1 5 2123.0 7.0 2.0 0.0 222.0 0.0 -4,-6 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000026987 Baz2b ENSMUST00000134908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026987 Baz2b ENSMUST00000144893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026987 Baz2b ENSMUST00000129124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027349 Fam98b ENSMUST00000143612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027349 Fam98b ENSMUST00000028825 ENSMUSP00000028825 TRANSLATION protein_coding - CCDS16571.1 1 429.0 0.0 0.0 0.0 440.3 0.0 -4,-5 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000027349 Fam98b ENSMUST00000140936 - NO_TRANSLATION retained_intron ENSMUSG00000039483 Asb6 ENSMUST00000041726 ENSMUSP00000043462 TRANSLATION protein_coding - CCDS38096.1 1 418.0 0.0 2.49 1.4 99.4 0.0 -4,-7 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000039483 Asb6 ENSMUST00000148036 - NO_TRANSLATION retained_intron ENSMUSG00000039483 Asb6 ENSMUST00000129628 ENSMUSP00000142231 TRANSLATION nonsense_mediated_decay - - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000039483 Asb6 ENSMUST00000147414 - NO_TRANSLATION retained_intron ENSMUSG00000039483 Asb6 ENSMUST00000144330 - NO_TRANSLATION retained_intron ENSMUSG00000032802 Srxn1 ENSMUST00000041500 ENSMUSP00000046196 TRANSLATION protein_coding - CCDS16877.2 1 155.0 11.0 2.0 0.4 0.0 0.0 -4,-7 0.9378 2 12.0 PRINCIPAL:1 ENSMUSG00000032802 Srxn1 ENSMUST00000137751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032802 Srxn1 ENSMUST00000128882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026750 Psmb7 ENSMUST00000028083 ENSMUSP00000028083 TRANSLATION protein_coding - CCDS16010.1 1 277.0 0.0 6.3 32.0 230.1 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000026750 Psmb7 ENSMUST00000151981 - NO_TRANSLATION retained_intron ENSMUSG00000075284 Wipf1 ENSMUST00000102679 ENSMUSP00000099740 TRANSLATION protein_coding - CCDS16131.1 1 493.0 0.0 2.0 0.0 45.6 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000075284 Wipf1 ENSMUST00000102680 ENSMUSP00000099741 TRANSLATION protein_coding - CCDS16131.1 1 493.0 0.0 2.0 0.0 45.6 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000075284 Wipf1 ENSMUST00000129594 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075284 Wipf1 ENSMUST00000094681 ENSMUSP00000092268 TRANSLATION protein_coding - CCDS16131.1 1 493.0 0.0 2.0 0.0 45.6 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000075284 Wipf1 ENSMUST00000141264 ENSMUSP00000119190 TRANSLATION protein_coding stop - 2 196.0 0.0 1.0 0.0 45.6 0.0 -4,-5 0.0164 3 -2.0 MINOR ENSMUSG00000075284 Wipf1 ENSMUST00000151939 ENSMUSP00000121335 TRANSLATION protein_coding stop - 3 58.0 0.0 1.0 0.0 45.6 0.0 -4,-5 0.0175 1 -2.0 MINOR ENSMUSG00000075284 Wipf1 ENSMUST00000143061 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068966 Zbtb34 ENSMUST00000091037 ENSMUSP00000088560 TRANSLATION protein_coding - CCDS38106.1 1 518.0 12.0 0.0 6.0 158.5 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000068966 Zbtb34 ENSMUST00000134589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068966 Zbtb34 ENSMUST00000113158 ENSMUSP00000108783 TRANSLATION protein_coding - CCDS38106.1 3 518.0 12.0 0.0 6.0 158.5 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000048647 Exd1 ENSMUST00000171024 ENSMUSP00000126713 TRANSLATION protein_coding - CCDS16603.1 1 570.0 0.0 2.045 4.9 34.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000048647 Exd1 ENSMUST00000133668 ENSMUSP00000116082 TRANSLATION protein_coding stop - 3 98.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000048647 Exd1 ENSMUST00000060009 ENSMUSP00000054980 TRANSLATION protein_coding - CCDS16603.1 1 570.0 0.0 2.045 4.9 34.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000033096 Apmap ENSMUST00000126704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033096 Apmap ENSMUST00000046399 ENSMUSP00000040840 TRANSLATION protein_coding - CCDS16858.1 1 415.0 3.0 8.0 29.2 98.9 0.0 -4,-7 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000033096 Apmap ENSMUST00000145325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026955 Sapcd2 ENSMUST00000137171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026955 Sapcd2 ENSMUST00000132539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026955 Sapcd2 ENSMUST00000028329 ENSMUSP00000028329 TRANSLATION protein_coding - CCDS38073.1 1 425.0 0.0 0.98 0.1 100.1 0.0 -4,-1 0.3535 - 8.0 ALTERNATIVE:2 ENSMUSG00000026955 Sapcd2 ENSMUST00000129214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026955 Sapcd2 ENSMUST00000100323 ENSMUSP00000097898 TRANSLATION protein_coding - - 2 446.0 0.0 0.98 0.0 100.1 0.0 -4,-1 0.0845 - 8.0 ALTERNATIVE:2 ENSMUSG00000026955 Sapcd2 ENSMUST00000155310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026955 Sapcd2 ENSMUST00000114293 ENSMUSP00000109932 TRANSLATION protein_coding - CCDS70999.1 1 391.0 0.0 0.98 2.4 100.1 0.0 -4,-1 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000094125 Cwc22rt1 ENSMUST00000178325 ENSMUSP00000136916 TRANSLATION protein_coding start - 5 243.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0008 - -2.0 MINOR ENSMUSG00000094125 Cwc22rt1 ENSMUST00000179192 ENSMUSP00000137026 TRANSLATION protein_coding - - - 830.0 0.0 3.43 0.0 130.3 0.0 -4,-2 0.8382 - 12.0 PRINCIPAL:1 ENSMUSG00000038241 Cep250 ENSMUST00000128683 ENSMUSP00000119845 TRANSLATION nonsense_mediated_decay start - 5 138.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038241 Cep250 ENSMUST00000109619 ENSMUSP00000105248 TRANSLATION protein_coding - CCDS50772.1 5 2435.0 0.0 3.1355 0.0 197.9 0.0 -4,-6 0.4836 21 10.872 MINOR ENSMUSG00000038241 Cep250 ENSMUST00000149905 - NO_TRANSLATION retained_intron ENSMUSG00000038241 Cep250 ENSMUST00000039994 ENSMUSP00000038255 TRANSLATION protein_coding - CCDS50773.1 5 2434.0 0.0 3.1355 0.0 197.9 0.0 -4,-6 0.4836 21 10.872 MINOR ENSMUSG00000038241 Cep250 ENSMUST00000156355 ENSMUSP00000122223 TRANSLATION protein_coding start/stop - 3 224.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 4 -2.0 MINOR ENSMUSG00000038241 Cep250 ENSMUST00000155160 - NO_TRANSLATION retained_intron ENSMUSG00000038241 Cep250 ENSMUST00000151569 ENSMUSP00000114426 TRANSLATION protein_coding stop - 1 706.0 0.0 2.9355 0.0 197.9 0.0 -4,-6 0.0311 2 -2.0 MINOR ENSMUSG00000038241 Cep250 ENSMUST00000109618 ENSMUSP00000105247 TRANSLATION protein_coding - - 1 338.0 0.0 0.0 0.0 197.9 0.0 -4,-6 0.0438 1 6.0 MINOR ENSMUSG00000038241 Cep250 ENSMUST00000148191 - NO_TRANSLATION retained_intron ENSMUSG00000038241 Cep250 ENSMUST00000094421 ENSMUSP00000091988 TRANSLATION protein_coding - CCDS50771.1 5 2414.0 0.0 3.698 0.0 197.9 0.0 -4,-6 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000025815 Dhtkd1 ENSMUST00000095147 ENSMUSP00000092769 TRANSLATION protein_coding - CCDS38040.1 5 921.0 19.0 15.25 5.3 516.5 0.0 -4,0 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000025815 Dhtkd1 ENSMUST00000155977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025815 Dhtkd1 ENSMUST00000127609 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025815 Dhtkd1 ENSMUST00000151649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075040 Zfp408 ENSMUST00000127702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075040 Zfp408 ENSMUST00000155045 - NO_TRANSLATION retained_intron ENSMUSG00000075040 Zfp408 ENSMUST00000111333 ENSMUSP00000106965 TRANSLATION protein_coding - CCDS16436.1 1 610.0 40.0 0.5 0.0 143.6 0.0 -4,-5 0.282 - 14.0 ALTERNATIVE:2 ENSMUSG00000075040 Zfp408 ENSMUST00000152769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075040 Zfp408 ENSMUST00000145582 ENSMUSP00000119082 TRANSLATION nonsense_mediated_decay - - 3 116.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000075040 Zfp408 ENSMUST00000099714 ENSMUSP00000097301 TRANSLATION protein_coding - CCDS84551.1 5 710.0 40.0 0.5 0.3 143.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000034810 Scn7a ENSMUST00000042792 ENSMUSP00000042405 TRANSLATION protein_coding - CCDS16081.1 1 1681.0 3.0 9.54 2.1 663.9 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000027358 Bmp2 ENSMUST00000028836 ENSMUSP00000028836 TRANSLATION protein_coding - CCDS16782.1 1 394.0 0.0 0.6 19.8 297.3 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036249 Rbm43 ENSMUST00000126090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036249 Rbm43 ENSMUST00000102767 ENSMUSP00000099828 TRANSLATION protein_coding - CCDS16030.1 1 343.0 0.0 0.0 0.8 0.0 0.0 -4,-6 0.8664 3 0.0 PRINCIPAL:1 ENSMUSG00000036249 Rbm43 ENSMUST00000152800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036249 Rbm43 ENSMUST00000165313 ENSMUSP00000126129 TRANSLATION protein_coding - CCDS16030.1 3 343.0 0.0 0.0 0.8 0.0 0.0 -4,-6 0.8664 3 0.0 PRINCIPAL:1 ENSMUSG00000036249 Rbm43 ENSMUST00000102768 ENSMUSP00000099829 TRANSLATION protein_coding - CCDS16030.1 5 343.0 0.0 0.0 0.8 0.0 0.0 -4,-6 0.8664 3 0.0 PRINCIPAL:1 ENSMUSG00000036249 Rbm43 ENSMUST00000132703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026923 Notch1 ENSMUST00000028288 ENSMUSP00000028288 TRANSLATION protein_coding - CCDS15806.1 1 2531.0 11.0 16.5375 0.4 1305.0 0.0 2,-3 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000026923 Notch1 ENSMUST00000132820 ENSMUSP00000115258 TRANSLATION protein_coding stop - 1 92.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000026923 Notch1 ENSMUST00000132941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026923 Notch1 ENSMUST00000148948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026923 Notch1 ENSMUST00000126872 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026923 Notch1 ENSMUST00000138034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026923 Notch1 ENSMUST00000147481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026923 Notch1 ENSMUST00000131393 - NO_TRANSLATION retained_intron ENSMUSG00000026923 Notch1 ENSMUST00000129506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026923 Notch1 ENSMUST00000123873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026923 Notch1 ENSMUST00000140082 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027573 Gid8 ENSMUST00000078687 ENSMUSP00000077753 TRANSLATION protein_coding - CCDS17185.1 1 228.0 0.0 4.0 33.8 158.4 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000027573 Gid8 ENSMUST00000029090 ENSMUSP00000029090 TRANSLATION protein_coding - CCDS17185.1 1 228.0 0.0 4.0 33.8 158.4 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000027573 Gid8 ENSMUST00000150067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075195 Or8k17 ENSMUST00000099900 ENSMUSP00000097484 TRANSLATION protein_coding - CCDS16247.1 - 320.0 0.0 1.0 0.0 167.6 5.0 -4,-7 0.3948 - 12.0 MINOR ENSMUSG00000075195 Or8k17 ENSMUST00000215607 ENSMUSP00000150508 TRANSLATION protein_coding - - 3 313.0 0.0 1.0 11.0 167.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032966 Fkbp1a ENSMUST00000148295 - NO_TRANSLATION retained_intron ENSMUSG00000032966 Fkbp1a ENSMUST00000044011 ENSMUSP00000037206 TRANSLATION protein_coding - CCDS16869.1 1 108.0 0.0 3.0 34.9 119.0 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000032966 Fkbp1a ENSMUST00000143230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032966 Fkbp1a ENSMUST00000137597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032966 Fkbp1a ENSMUST00000132614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032966 Fkbp1a ENSMUST00000144171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032966 Fkbp1a ENSMUST00000142985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032966 Fkbp1a ENSMUST00000126670 - NO_TRANSLATION retained_intron ENSMUSG00000032966 Fkbp1a ENSMUST00000142271 ENSMUSP00000118725 TRANSLATION protein_coding start - 1 161.0 0.0 2.0 0.0 98.6 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000032966 Fkbp1a ENSMUST00000148978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039715 Dync2i2 ENSMUST00000139145 - NO_TRANSLATION retained_intron ENSMUSG00000039715 Dync2i2 ENSMUST00000143892 - NO_TRANSLATION retained_intron ENSMUSG00000039715 Dync2i2 ENSMUST00000146275 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039715 Dync2i2 ENSMUST00000113711 ENSMUSP00000109340 TRANSLATION protein_coding - CCDS15865.2 1 537.0 0.0 6.292 5.6 26.7 0.0 -1,3 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000095586 Or4k41 ENSMUST00000075390 ENSMUSP00000074850 TRANSLATION protein_coding - CCDS16526.1 - 305.0 0.0 1.0 8.0 161.9 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027472 Pdrg1 ENSMUST00000150545 ENSMUSP00000115545 TRANSLATION nonsense_mediated_decay - - 2 39.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027472 Pdrg1 ENSMUST00000124220 - NO_TRANSLATION retained_intron ENSMUSG00000027472 Pdrg1 ENSMUST00000140325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027472 Pdrg1 ENSMUST00000140853 ENSMUSP00000117116 TRANSLATION nonsense_mediated_decay - - 3 39.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027472 Pdrg1 ENSMUST00000151392 - NO_TRANSLATION retained_intron ENSMUSG00000027472 Pdrg1 ENSMUST00000152072 - NO_TRANSLATION retained_intron ENSMUSG00000027472 Pdrg1 ENSMUST00000123083 ENSMUSP00000115986 TRANSLATION nonsense_mediated_decay - - 3 35.0 0.0 0.816 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027472 Pdrg1 ENSMUST00000028972 ENSMUSP00000028972 TRANSLATION protein_coding - CCDS16904.1 1 133.0 0.0 3.75 14.0 32.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000037820 Tgm2 ENSMUST00000152690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037820 Tgm2 ENSMUST00000140923 - NO_TRANSLATION retained_intron ENSMUSG00000037820 Tgm2 ENSMUST00000103122 ENSMUSP00000099411 TRANSLATION protein_coding - CCDS16985.1 1 686.0 10.0 12.33 19.2 345.2 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000037820 Tgm2 ENSMUST00000174718 ENSMUSP00000133662 TRANSLATION nonsense_mediated_decay - - 5 146.0 0.0 2.0 0.0 118.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000053916 Nanp ENSMUST00000140124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053916 Nanp ENSMUST00000066640 ENSMUSP00000063895 TRANSLATION protein_coding - CCDS16864.1 1 248.0 9.0 2.0 11.9 53.8 0.0 -4,-6 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000002111 Spi1 ENSMUST00000169852 ENSMUSP00000130368 TRANSLATION protein_coding stop - 3 143.0 0.0 0.0 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000002111 Spi1 ENSMUST00000132741 ENSMUSP00000128457 TRANSLATION protein_coding stop - 3 77.0 0.0 0.0 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000002111 Spi1 ENSMUST00000249728 ENSMUSP00000159896 TRANSLATION protein_coding - - - 311.0 0.0 2.0 0.0 80.7 0.0 -,- 0.0191 2 12.0 MINOR ENSMUSG00000002111 Spi1 ENSMUST00000002180 ENSMUSP00000002180 TRANSLATION protein_coding - CCDS16425.1 1 272.0 0.0 2.0 15.3 80.7 0.0 -,- 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000002111 Spi1 ENSMUST00000249729 ENSMUSP00000159897 TRANSLATION protein_coding - - - 185.0 0.0 0.25 0.0 0.0 0.0 -,- 0.0 - 0.75 MINOR ENSMUSG00000002111 Spi1 ENSMUST00000131400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026837 Col5a1 ENSMUST00000238851 ENSMUSP00000159095 TRANSLATION protein_coding start - - 289.0 0.0 4.55 0.0 325.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026837 Col5a1 ENSMUST00000145423 ENSMUSP00000123532 TRANSLATION protein_coding start/stop - 5 349.0 0.0 5.03 0.0 361.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026837 Col5a1 ENSMUST00000028280 ENSMUSP00000028280 TRANSLATION protein_coding - CCDS15831.1 1 1838.0 0.0 19.826 0.4 448.8 0.0 3,-1 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000053702 Nebl ENSMUST00000127912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053702 Nebl ENSMUST00000150194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053702 Nebl ENSMUST00000177966 ENSMUSP00000137567 TRANSLATION protein_coding - - 1 120.0 0.0 0.0 0.0 83.5 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000053702 Nebl ENSMUST00000132418 ENSMUSP00000122024 TRANSLATION protein_coding - - 1 452.0 0.0 0.0 0.0 147.3 0.0 -4,-5 0.0014 11 0.0 MINOR ENSMUSG00000053702 Nebl ENSMUST00000145492 ENSMUSP00000121313 TRANSLATION protein_coding stop - 1 447.0 0.0 0.0 0.0 173.8 0.0 -4,-5 0.0009 11 -2.0 MINOR ENSMUSG00000053702 Nebl ENSMUST00000124270 ENSMUSP00000117805 TRANSLATION protein_coding - - 5 1014.0 0.0 1.3 7.4 492.4 0.0 -4,-5 0.4093 26 8.988 MINOR ENSMUSG00000053702 Nebl ENSMUST00000130725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053702 Nebl ENSMUST00000138241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053702 Nebl ENSMUST00000137253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053702 Nebl ENSMUST00000028080 ENSMUSP00000028080 TRANSLATION protein_coding - CCDS15706.1 1 270.0 7.0 3.425 21.7 192.1 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000053702 Nebl ENSMUST00000145545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053702 Nebl ENSMUST00000124611 ENSMUSP00000116065 TRANSLATION protein_coding start/stop - 3 131.0 0.0 0.0 0.0 49.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000053702 Nebl ENSMUST00000131957 ENSMUSP00000118525 TRANSLATION protein_coding - - 1 526.0 0.0 0.0 0.0 225.3 0.0 -4,-5 0.0026 13 0.0 MINOR ENSMUSG00000045150 Or5d35 ENSMUST00000054845 ENSMUSP00000060977 TRANSLATION protein_coding - CCDS16321.1 - 321.0 0.0 1.0 1.9 174.7 4.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000045150 Or5d35 ENSMUST00000214438 ENSMUSP00000150251 TRANSLATION protein_coding - CCDS16321.1 5 321.0 0.0 1.0 1.9 174.7 4.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000045150 Or5d35 ENSMUST00000217006 ENSMUSP00000150220 TRANSLATION protein_coding - CCDS16321.1 5 321.0 0.0 1.0 1.9 174.7 4.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000053896 4933409G03Rik ENSMUST00000102713 ENSMUSP00000099774 TRANSLATION protein_coding - CCDS16085.1 1 320.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8908 - 0.0 PRINCIPAL:1 ENSMUSG00000053896 4933409G03Rik ENSMUST00000137117 ENSMUSP00000117165 TRANSLATION protein_coding start/stop - 5 196.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0258 - -2.0 MINOR ENSMUSG00000036752 Tubb4b ENSMUST00000145607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036752 Tubb4b ENSMUST00000043584 ENSMUSP00000042342 TRANSLATION protein_coding - CCDS15753.1 1 445.0 16.0 3.5 26.0 376.4 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000027068 Dhrs9 ENSMUST00000063690 ENSMUSP00000069631 TRANSLATION protein_coding - CCDS16091.1 1 319.0 30.0 4.0 8.3 136.4 0.0 1,-3 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000059555 Tor4a ENSMUST00000081869 ENSMUSP00000080548 TRANSLATION protein_coding - CCDS15750.1 1 426.0 12.0 0.65 0.3 48.7 0.0 -4,-7 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000059555 Tor4a ENSMUST00000142857 ENSMUSP00000142048 TRANSLATION protein_coding stop - 3 111.0 7.0 0.4 0.0 36.3 0.0 -4,-2 0.0004 1 -2.0 MINOR ENSMUSG00000059555 Tor4a ENSMUST00000137920 ENSMUSP00000141641 TRANSLATION protein_coding stop - 5 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000074671 Tspyl3 ENSMUST00000099194 ENSMUSP00000096799 TRANSLATION protein_coding - CCDS16907.2 - 334.0 0.0 0.6 0.1 75.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000009621 Vav2 ENSMUST00000135584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009621 Vav2 ENSMUST00000056176 ENSMUSP00000062782 TRANSLATION protein_coding - CCDS15827.1 1 868.0 8.0 19.4255 21.9 454.9 0.0 -4,-6 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000009621 Vav2 ENSMUST00000149758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009621 Vav2 ENSMUST00000146843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009621 Vav2 ENSMUST00000185188 ENSMUSP00000138964 TRANSLATION nonsense_mediated_decay - - 1 829.0 8.0 15.988 0.0 354.3 0.0 -4,-7 0.021 12 -2.0 MINOR ENSMUSG00000009621 Vav2 ENSMUST00000132642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009621 Vav2 ENSMUST00000148067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059742 Kcnh7 ENSMUST00000112454 ENSMUSP00000108073 TRANSLATION protein_coding - - 1 522.0 0.0 2.65 0.0 117.5 1.0 -4,-2 0.002 4 0.0 MINOR ENSMUSG00000059742 Kcnh7 ENSMUST00000075052 ENSMUSP00000074563 TRANSLATION protein_coding - CCDS38128.1 1 1195.0 0.0 6.45 8.4 241.0 4.0 -4,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000059742 Kcnh7 ENSMUST00000131799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059742 Kcnh7 ENSMUST00000112452 ENSMUSP00000108071 TRANSLATION protein_coding - - 1 515.0 0.0 2.65 0.0 117.5 1.0 -4,-2 0.002 4 0.0 MINOR ENSMUSG00000044103 Il36g ENSMUST00000057567 ENSMUSP00000053391 TRANSLATION protein_coding - CCDS50518.1 1 193.0 0.0 3.0 0.0 48.8 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000034780 B3galt1 ENSMUST00000180887 ENSMUSP00000137947 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0019 - -2.0 MINOR ENSMUSG00000034780 B3galt1 ENSMUST00000188614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034780 B3galt1 ENSMUST00000112346 ENSMUSP00000107965 TRANSLATION protein_coding - CCDS16083.1 - 326.0 0.0 1.132 34.7 204.6 0.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000034780 B3galt1 ENSMUST00000042456 ENSMUSP00000041343 TRANSLATION protein_coding - CCDS16083.1 1 326.0 0.0 1.132 34.7 204.6 0.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027428 Rbbp9 ENSMUST00000140340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027428 Rbbp9 ENSMUST00000028915 ENSMUSP00000028915 TRANSLATION protein_coding - CCDS16821.1 1 186.0 3.0 4.25 12.7 51.3 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000060336 Zfp937 ENSMUST00000073782 ENSMUSP00000073454 TRANSLATION protein_coding - CCDS50738.1 1 503.0 58.0 1.3 0.0 355.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000027239 Mdk ENSMUST00000111309 ENSMUSP00000106941 TRANSLATION protein_coding - CCDS16440.1 2 140.0 0.0 2.0 0.0 181.9 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000027239 Mdk ENSMUST00000069423 ENSMUSP00000068413 TRANSLATION protein_coding - CCDS16440.1 1 140.0 0.0 2.0 0.0 181.9 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000027239 Mdk ENSMUST00000090602 ENSMUSP00000088090 TRANSLATION protein_coding - CCDS16440.1 5 140.0 0.0 2.0 0.0 181.9 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000027239 Mdk ENSMUST00000028672 ENSMUSP00000028672 TRANSLATION protein_coding - CCDS16440.1 1 140.0 0.0 2.0 0.0 181.9 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000079071 Slc28a2b ENSMUST00000110521 ENSMUSP00000106150 TRANSLATION protein_coding - CCDS38223.1 5 660.0 0.0 9.05 3.5 349.8 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000079071 Slc28a2b ENSMUST00000132215 - NO_TRANSLATION retained_intron ENSMUSG00000078898 Zfp968 ENSMUST00000109048 ENSMUSP00000104676 TRANSLATION protein_coding - - 3 138.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - 1.566 MINOR ENSMUSG00000078898 Zfp968 ENSMUST00000131676 ENSMUSP00000116661 TRANSLATION protein_coding - - 2 83.0 0.0 1.75 0.0 73.1 0.0 -4,-6 0.0 - 4.566 MINOR ENSMUSG00000078898 Zfp968 ENSMUST00000109047 ENSMUSP00000104675 TRANSLATION protein_coding - - 3 485.0 53.0 2.3 0.0 316.6 0.0 -4,-6 0.7979 - 18.0 PRINCIPAL:1 ENSMUSG00000068816 Or5i1 ENSMUST00000105210 ENSMUSP00000100845 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 13.8 165.9 4.0 -4,-5 0.8863 - 12.0 ALTERNATIVE:1 ENSMUSG00000068816 Or5i1 ENSMUST00000090709 ENSMUSP00000088211 TRANSLATION protein_coding - CCDS16308.1 - 316.0 0.0 1.0 11.8 165.9 4.0 -4,-5 1.0 - 11.376 PRINCIPAL:4 ENSMUSG00000068816 Or5i1 ENSMUST00000215394 ENSMUSP00000150778 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 13.8 165.9 4.0 -4,-5 0.8863 - 12.0 ALTERNATIVE:1 ENSMUSG00000078861 Zfp931 ENSMUST00000108923 ENSMUSP00000104551 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 79.6 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078861 Zfp931 ENSMUST00000108924 ENSMUSP00000104552 TRANSLATION protein_coding - CCDS50836.1 3 298.0 31.0 2.3 0.0 264.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078861 Zfp931 ENSMUST00000123265 - NO_TRANSLATION retained_intron ENSMUSG00000078861 Zfp931 ENSMUST00000131702 ENSMUSP00000120716 TRANSLATION protein_coding - - 3 46.0 0.0 1.0 0.0 79.6 0.0 -4,-5 0.0 - 2.61 MINOR ENSMUSG00000094336 Cwc22rt2 ENSMUST00000179448 ENSMUSP00000136590 TRANSLATION protein_coding start - 5 243.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0008 - -2.0 MINOR ENSMUSG00000094336 Cwc22rt2 ENSMUST00000178960 ENSMUSP00000136546 TRANSLATION protein_coding - - - 830.0 0.0 3.43 0.0 130.3 0.0 -4,-2 0.8382 - 12.0 PRINCIPAL:1 ENSMUSG00000098488 Pla2g4b ENSMUST00000153571 - NO_TRANSLATION retained_intron ENSMUSG00000098488 Pla2g4b ENSMUST00000136042 - NO_TRANSLATION retained_intron ENSMUSG00000098488 Pla2g4b ENSMUST00000130018 - NO_TRANSLATION retained_intron ENSMUSG00000098488 Pla2g4b ENSMUST00000126150 ENSMUSP00000118458 TRANSLATION protein_coding - CCDS38209.2 5 791.0 4.0 11.27375 0.0 168.4 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000098488 Pla2g4b ENSMUST00000143794 - NO_TRANSLATION retained_intron ENSMUSG00000098488 Pla2g4b ENSMUST00000134380 - NO_TRANSLATION retained_intron ENSMUSG00000101480 Or4c115 ENSMUST00000213288 ENSMUSP00000150812 TRANSLATION protein_coding - CCDS16365.1 5 311.0 0.0 1.0 10.4 159.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101480 Or4c115 ENSMUST00000099789 ENSMUSP00000097377 TRANSLATION protein_coding - CCDS16365.1 - 311.0 0.0 1.0 10.4 159.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101480 Or4c115 ENSMUST00000099806 ENSMUSP00000097394 TRANSLATION protein_coding - CCDS16365.1 3 311.0 0.0 1.0 10.4 159.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036646 Man1b1 ENSMUST00000149464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036646 Man1b1 ENSMUST00000042390 ENSMUSP00000036996 TRANSLATION protein_coding - CCDS15765.1 1 658.0 0.0 8.5 2.2 546.3 1.0 -4,-7 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000036646 Man1b1 ENSMUST00000131826 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036646 Man1b1 ENSMUST00000136245 ENSMUSP00000114989 TRANSLATION protein_coding stop - 3 238.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0025 1 -2.0 MINOR ENSMUSG00000036646 Man1b1 ENSMUST00000126210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036646 Man1b1 ENSMUST00000152245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027184 Caprin1 ENSMUST00000145606 ENSMUSP00000119327 TRANSLATION protein_coding start - 3 93.0 0.0 0.0 0.0 76.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027184 Caprin1 ENSMUST00000128477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027184 Caprin1 ENSMUST00000132537 - NO_TRANSLATION retained_intron ENSMUSG00000027184 Caprin1 ENSMUST00000146527 - NO_TRANSLATION retained_intron ENSMUSG00000027184 Caprin1 ENSMUST00000145697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027184 Caprin1 ENSMUST00000141750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027184 Caprin1 ENSMUST00000143349 ENSMUSP00000117733 TRANSLATION protein_coding start - 2 214.0 0.0 0.0 0.0 305.7 0.0 -4,-2 0.0007 4 -2.0 MINOR ENSMUSG00000027184 Caprin1 ENSMUST00000145770 - NO_TRANSLATION retained_intron ENSMUSG00000027184 Caprin1 ENSMUST00000137572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027184 Caprin1 ENSMUST00000137390 - NO_TRANSLATION retained_intron ENSMUSG00000027184 Caprin1 ENSMUST00000149175 - NO_TRANSLATION retained_intron ENSMUSG00000027184 Caprin1 ENSMUST00000155733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027184 Caprin1 ENSMUST00000111147 ENSMUSP00000106777 TRANSLATION protein_coding - CCDS16481.1 1 707.0 0.0 5.15 6.7 457.4 0.0 -4,-2 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000027184 Caprin1 ENSMUST00000028607 ENSMUSP00000028607 TRANSLATION protein_coding - CCDS16481.1 1 707.0 0.0 5.15 6.7 457.4 0.0 -4,-2 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000027184 Caprin1 ENSMUST00000143188 ENSMUSP00000114423 TRANSLATION protein_coding start/stop - 3 254.0 0.0 2.05 0.0 91.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000053552 Ebf4 ENSMUST00000110287 ENSMUSP00000105916 TRANSLATION protein_coding - - 5 569.0 4.0 10.0 0.0 623.1 0.0 -4,-5 0.0653 - 16.0 MINOR ENSMUSG00000053552 Ebf4 ENSMUST00000140169 ENSMUSP00000134520 TRANSLATION nonsense_mediated_decay - - 2 541.0 4.0 10.0 0.0 623.1 0.0 -4,-5 0.0599 - -2.0 MINOR ENSMUSG00000053552 Ebf4 ENSMUST00000134728 - NO_TRANSLATION retained_intron ENSMUSG00000053552 Ebf4 ENSMUST00000126740 ENSMUSP00000133528 TRANSLATION nonsense_mediated_decay - - 2 582.0 4.0 10.0 0.0 623.1 0.0 -4,-5 0.0994 - -2.0 MINOR ENSMUSG00000053552 Ebf4 ENSMUST00000110286 ENSMUSP00000105915 TRANSLATION protein_coding - CCDS50709.1 1 599.0 4.0 10.0 8.9 623.1 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000053552 Ebf4 ENSMUST00000110288 ENSMUSP00000105917 TRANSLATION protein_coding - - 5 696.0 4.0 10.0 1.1 623.1 0.0 -1,1 0.2619 - 16.039 MINOR ENSMUSG00000050211 Pla2g4e ENSMUST00000127009 - NO_TRANSLATION retained_intron ENSMUSG00000050211 Pla2g4e ENSMUST00000136845 - NO_TRANSLATION retained_intron ENSMUSG00000050211 Pla2g4e ENSMUST00000152263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050211 Pla2g4e ENSMUST00000090071 ENSMUSP00000087525 TRANSLATION protein_coding - CCDS16616.1 1 875.0 8.0 9.76 0.0 187.3 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000026820 Ptges2 ENSMUST00000028162 ENSMUSP00000028162 TRANSLATION protein_coding - CCDS15914.1 1 384.0 26.0 6.8 0.4 41.0 0.0 0,1 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000026820 Ptges2 ENSMUST00000130121 - NO_TRANSLATION retained_intron ENSMUSG00000026820 Ptges2 ENSMUST00000123714 ENSMUSP00000141638 TRANSLATION nonsense_mediated_decay start - 2 54.0 0.0 0.8 0.0 0.0 0.0 2,3 0.0037 - -2.0 MINOR ENSMUSG00000047907 Tshz2 ENSMUST00000185239 ENSMUSP00000140884 TRANSLATION protein_coding start - 1 522.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0354 2 -2.0 MINOR ENSMUSG00000047907 Tshz2 ENSMUST00000123300 ENSMUSP00000118550 TRANSLATION protein_coding start - 1 561.0 7.0 0.0 0.0 0.0 0.0 -4,-5 0.0355 2 -2.0 MINOR ENSMUSG00000047907 Tshz2 ENSMUST00000109159 ENSMUSP00000104787 TRANSLATION protein_coding - CCDS50805.1 1 1030.0 15.0 0.2 12.3 0.0 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000047907 Tshz2 ENSMUST00000140699 ENSMUSP00000120013 TRANSLATION protein_coding start - 1 208.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0199 - -2.0 MINOR ENSMUSG00000047907 Tshz2 ENSMUST00000109157 ENSMUSP00000104785 TRANSLATION protein_coding - CCDS50805.1 2 1030.0 15.0 0.2 12.3 0.0 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000002728 Naa20 ENSMUST00000134759 ENSMUSP00000126280 TRANSLATION protein_coding - - 2 61.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000002728 Naa20 ENSMUST00000129502 - NO_TRANSLATION retained_intron ENSMUSG00000002728 Naa20 ENSMUST00000136330 - NO_TRANSLATION retained_intron ENSMUSG00000002728 Naa20 ENSMUST00000169732 ENSMUSP00000132857 TRANSLATION protein_coding stop - 5 111.0 11.0 3.254 0.0 32.6 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000002728 Naa20 ENSMUST00000110000 ENSMUSP00000105627 TRANSLATION protein_coding - CCDS50735.1 1 178.0 21.0 5.07 33.9 55.8 0.0 -4,-5 1.0 4 21.472 PRINCIPAL:1 ENSMUSG00000002728 Naa20 ENSMUST00000165635 ENSMUSP00000129127 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000002728 Naa20 ENSMUST00000149461 ENSMUSP00000127918 TRANSLATION nonsense_mediated_decay - - 3 73.0 0.0 1.825 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002728 Naa20 ENSMUST00000002805 ENSMUSP00000002805 TRANSLATION protein_coding - CCDS16827.1 1 188.0 21.0 5.334 0.1 48.0 0.0 -4,-6 0.0892 4 17.16 MINOR ENSMUSG00000002728 Naa20 ENSMUST00000150316 ENSMUSP00000127844 TRANSLATION protein_coding stop - 5 48.0 11.0 1.33 0.0 28.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042845 Wfdc12 ENSMUST00000051272 ENSMUSP00000050836 TRANSLATION protein_coding - CCDS38318.1 1 85.0 0.0 1.0 0.0 29.2 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000062661 Ncs1 ENSMUST00000000199 ENSMUSP00000000199 TRANSLATION protein_coding - CCDS15896.1 1 190.0 25.0 5.58 25.8 91.6 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000062661 Ncs1 ENSMUST00000150670 ENSMUSP00000142269 TRANSLATION nonsense_mediated_decay - - 5 82.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000068154 Insm1 ENSMUST00000089257 ENSMUSP00000092048 TRANSLATION protein_coding - CCDS16830.1 - 521.0 18.0 0.0 2.5 69.9 0.0 -4,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075208 Or5ar1 ENSMUST00000102634 ENSMUSP00000099694 TRANSLATION protein_coding - CCDS16223.1 - 310.0 0.0 1.0 14.5 184.1 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075208 Or5ar1 ENSMUST00000213515 ENSMUSP00000150622 TRANSLATION protein_coding - CCDS16223.1 5 310.0 0.0 1.0 14.5 184.1 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000094464 Or1j11 ENSMUST00000216645 ENSMUSP00000149068 TRANSLATION protein_coding - CCDS15972.1 3 309.0 0.0 1.0 6.1 185.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094464 Or1j11 ENSMUST00000071437 ENSMUSP00000071383 TRANSLATION protein_coding - CCDS15972.1 - 309.0 0.0 1.0 6.1 185.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051149 Adnp ENSMUST00000131200 - NO_TRANSLATION retained_intron ENSMUSG00000051149 Adnp ENSMUST00000057793 ENSMUSP00000056809 TRANSLATION protein_coding - CCDS38342.1 5 1108.0 20.0 0.0 7.2 28.9 0.0 -4,-7 1.0 26 14.0 PRINCIPAL:1 ENSMUSG00000051149 Adnp ENSMUST00000088001 ENSMUSP00000085316 TRANSLATION protein_coding - CCDS38342.1 1 1108.0 20.0 0.0 7.2 28.9 0.0 -4,-7 1.0 26 14.0 PRINCIPAL:1 ENSMUSG00000051149 Adnp ENSMUST00000139984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078198 Or1l4b ENSMUST00000104995 ENSMUSP00000100611 TRANSLATION protein_coding - - 5 307.0 0.0 1.0 0.4 193.3 5.0 -3,-6 0.8116 - 12.0 PRINCIPAL:1 ENSMUSG00000078198 Or1l4b ENSMUST00000217298 ENSMUSP00000151166 TRANSLATION protein_coding - - 5 307.0 0.0 1.0 0.4 193.3 5.0 -3,-6 0.8116 - 12.0 PRINCIPAL:1 ENSMUSG00000078198 Or1l4b ENSMUST00000214905 ENSMUSP00000150436 TRANSLATION protein_coding - - 5 307.0 0.0 1.0 0.4 193.3 5.0 -3,-6 0.8116 - 12.0 PRINCIPAL:1 ENSMUSG00000044991 Shld1 ENSMUST00000148271 ENSMUSP00000118968 TRANSLATION protein_coding stop - 3 156.0 0.0 1.0 0.0 230.3 0.0 -4,-5 0.019 - -2.0 MINOR ENSMUSG00000044991 Shld1 ENSMUST00000141460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044991 Shld1 ENSMUST00000061891 ENSMUSP00000057009 TRANSLATION protein_coding - CCDS50727.1 1 206.0 0.0 1.0 2.5 322.3 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000044991 Shld1 ENSMUST00000110132 ENSMUSP00000105759 TRANSLATION protein_coding - CCDS50727.1 1 206.0 0.0 1.0 2.5 322.3 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000074939 Chrm5 ENSMUST00000099589 ENSMUSP00000097185 TRANSLATION protein_coding - CCDS16556.1 - 532.0 0.0 0.6 14.3 262.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000074994 Qser1 ENSMUST00000231375 ENSMUSP00000155882 TRANSLATION protein_coding - - - 1788.0 0.0 0.405 0.3 78.2 0.0 -4,-5 1.0 21 8.0 PRINCIPAL:3 ENSMUSG00000074994 Qser1 ENSMUST00000238887 ENSMUSP00000159098 TRANSLATION nonsense_mediated_decay - - - 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000074994 Qser1 ENSMUST00000117237 ENSMUSP00000114062 TRANSLATION protein_coding - CCDS50653.1 5 1698.0 0.0 0.405 0.0 78.2 0.0 -4,-5 0.8661 20 8.0 ALTERNATIVE:2 ENSMUSG00000034738 Nostrin ENSMUST00000141276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034738 Nostrin ENSMUST00000041865 ENSMUSP00000036923 TRANSLATION protein_coding - CCDS16087.1 1 506.0 0.0 4.682 11.3 102.0 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000027363 Usp8 ENSMUST00000110416 ENSMUSP00000106046 TRANSLATION protein_coding - CCDS57185.1 1 1091.0 4.0 12.22 0.0 403.8 0.0 -4,-5 0.311 25 10.34 MINOR ENSMUSG00000027363 Usp8 ENSMUST00000138859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027363 Usp8 ENSMUST00000028841 ENSMUSP00000028841 TRANSLATION protein_coding - CCDS16687.1 1 1080.0 4.0 12.55 0.1 405.8 0.0 -4,-5 1.0 25 12.0 PRINCIPAL:1 ENSMUSG00000027635 Dsn1 ENSMUST00000146413 ENSMUSP00000122524 TRANSLATION protein_coding stop - 5 232.0 0.0 3.178 0.0 100.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027635 Dsn1 ENSMUST00000141388 - NO_TRANSLATION retained_intron ENSMUSG00000027635 Dsn1 ENSMUST00000124671 ENSMUSP00000120354 TRANSLATION protein_coding stop - 5 124.0 0.0 0.33 0.0 29.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027635 Dsn1 ENSMUST00000103129 ENSMUSP00000099418 TRANSLATION protein_coding - CCDS16972.1 1 348.0 0.0 5.258 0.4 217.3 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000027635 Dsn1 ENSMUST00000154213 ENSMUSP00000122593 TRANSLATION protein_coding stop - 1 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027635 Dsn1 ENSMUST00000103130 ENSMUSP00000099419 TRANSLATION protein_coding - CCDS16972.1 1 348.0 0.0 5.258 0.4 217.3 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000015846 Rxra ENSMUST00000148756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015846 Rxra ENSMUST00000129514 ENSMUSP00000115165 TRANSLATION protein_coding stop - 5 165.0 7.0 1.6 0.0 213.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000015846 Rxra ENSMUST00000113934 ENSMUSP00000109567 TRANSLATION protein_coding - CCDS71011.1 1 439.0 26.0 8.1 12.5 374.8 0.0 -4,-6 0.9225 4 17.08 ALTERNATIVE:1 ENSMUSG00000015846 Rxra ENSMUST00000238913 ENSMUSP00000159198 TRANSLATION protein_coding - - - 497.0 26.0 8.1 1.1 379.8 0.0 -1,-5 0.2172 4 14.032 MINOR ENSMUSG00000015846 Rxra ENSMUST00000077257 ENSMUSP00000076491 TRANSLATION protein_coding - CCDS15830.1 1 467.0 26.0 8.1 13.6 379.8 0.0 -4,-6 1.0 5 18.0 PRINCIPAL:3 ENSMUSG00000015846 Rxra ENSMUST00000100251 ENSMUSP00000097822 TRANSLATION protein_coding - CCDS71011.1 1 439.0 26.0 8.1 12.5 374.8 0.0 -4,-6 0.9225 4 17.08 ALTERNATIVE:1 ENSMUSG00000015846 Rxra ENSMUST00000238859 ENSMUSP00000158864 TRANSLATION protein_coding stop - - 322.0 23.0 5.1 0.0 288.9 0.0 -4,-6 0.0007 1 -2.0 MINOR ENSMUSG00000027439 Gzf1 ENSMUST00000151362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027439 Gzf1 ENSMUST00000028928 ENSMUSP00000028928 TRANSLATION protein_coding - CCDS16841.1 1 706.0 36.0 3.4 4.2 247.1 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000027439 Gzf1 ENSMUST00000131292 ENSMUSP00000121799 TRANSLATION protein_coding stop - 2 146.0 0.0 0.6 0.0 88.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063235 Ptpmt1 ENSMUST00000125001 ENSMUSP00000159389 TRANSLATION nonsense_mediated_decay - - 1 87.0 0.0 1.75 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000063235 Ptpmt1 ENSMUST00000111461 ENSMUSP00000159390 TRANSLATION protein_coding - - 1 193.0 10.0 3.75 0.7 66.9 0.0 -4,-2 0.757 4 18.0 PRINCIPAL:1 ENSMUSG00000063235 Ptpmt1 ENSMUST00000150556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063235 Ptpmt1 ENSMUST00000155621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027452 Acss1 ENSMUST00000028944 ENSMUSP00000028944 TRANSLATION protein_coding - CCDS16859.1 1 682.0 16.0 11.83 1.4 434.4 0.0 -4,0 1.0 21 19.0 PRINCIPAL:1 ENSMUSG00000027452 Acss1 ENSMUST00000141785 - NO_TRANSLATION retained_intron ENSMUSG00000027452 Acss1 ENSMUST00000147135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027452 Acss1 ENSMUST00000154328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027452 Acss1 ENSMUST00000141500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027035 Cers6 ENSMUST00000183755 - NO_TRANSLATION retained_intron ENSMUSG00000027035 Cers6 ENSMUST00000141983 - NO_TRANSLATION retained_intron ENSMUSG00000027035 Cers6 ENSMUST00000176018 ENSMUSP00000135604 TRANSLATION protein_coding - CCDS84532.1 5 392.0 0.0 8.0 25.6 167.1 3.0 -4,-7 0.9755 2 11.7 ALTERNATIVE:1 ENSMUSG00000027035 Cers6 ENSMUST00000155748 - NO_TRANSLATION retained_intron ENSMUSG00000027035 Cers6 ENSMUST00000175684 - NO_TRANSLATION retained_intron ENSMUSG00000027035 Cers6 ENSMUST00000141498 - NO_TRANSLATION retained_intron ENSMUSG00000027035 Cers6 ENSMUST00000028426 ENSMUSP00000028426 TRANSLATION protein_coding - CCDS16086.1 1 384.0 0.0 8.0 27.6 167.1 3.0 -4,-7 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000051373 Plpp7 ENSMUST00000146502 ENSMUSP00000141805 TRANSLATION protein_coding start - 1 65.0 0.0 1.3 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000051373 Plpp7 ENSMUST00000057423 ENSMUSP00000054337 TRANSLATION protein_coding - CCDS15906.1 1 271.0 4.0 2.6 15.9 51.8 2.0 -4,-1 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000051373 Plpp7 ENSMUST00000140762 ENSMUSP00000141597 TRANSLATION protein_coding - - 3 115.0 4.0 1.0 1.2 51.5 0.0 -4,-7 0.0814 - 12.326 MINOR ENSMUSG00000079324 4932414N04Rik ENSMUST00000135023 - NO_TRANSLATION retained_intron ENSMUSG00000079324 4932414N04Rik ENSMUST00000112332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079324 4932414N04Rik ENSMUST00000055930 ENSMUSP00000059809 TRANSLATION protein_coding - CCDS50598.1 5 752.0 0.0 0.0 0.0 35.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000079324 4932414N04Rik ENSMUST00000125621 ENSMUSP00000121558 TRANSLATION protein_coding stop - 5 162.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000079324 4932414N04Rik ENSMUST00000128259 ENSMUSP00000135792 TRANSLATION protein_coding - CCDS50598.1 1 752.0 0.0 0.0 0.0 35.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000040084 Bub1b ENSMUST00000038341 ENSMUSP00000037126 TRANSLATION protein_coding - CCDS16579.1 1 1052.0 0.0 6.616 0.1 146.4 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000040084 Bub1b ENSMUST00000130512 - NO_TRANSLATION retained_intron ENSMUSG00000040084 Bub1b ENSMUST00000127356 - NO_TRANSLATION retained_intron ENSMUSG00000040084 Bub1b ENSMUST00000126013 - NO_TRANSLATION retained_intron ENSMUSG00000027175 Tcp11l1 ENSMUST00000028597 ENSMUSP00000028597 TRANSLATION protein_coding - CCDS16491.1 1 509.0 0.0 3.0 10.3 352.5 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000027175 Tcp11l1 ENSMUST00000126310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027175 Tcp11l1 ENSMUST00000137428 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027175 Tcp11l1 ENSMUST00000129571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027175 Tcp11l1 ENSMUST00000111118 ENSMUSP00000106747 TRANSLATION protein_coding - CCDS16491.1 5 509.0 0.0 3.0 10.3 352.5 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000027175 Tcp11l1 ENSMUST00000132600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027175 Tcp11l1 ENSMUST00000129792 - NO_TRANSLATION retained_intron ENSMUSG00000005804 Bloc1s6 ENSMUST00000148460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005804 Bloc1s6 ENSMUST00000146449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005804 Bloc1s6 ENSMUST00000127595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005804 Bloc1s6 ENSMUST00000129690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005804 Bloc1s6 ENSMUST00000145037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005804 Bloc1s6 ENSMUST00000005954 ENSMUSP00000005954 TRANSLATION protein_coding - CCDS16668.1 1 172.0 0.0 3.5 11.2 77.3 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000041966 Dcaf17 ENSMUST00000112167 ENSMUSP00000107791 TRANSLATION nonsense_mediated_decay - - 5 156.0 0.0 0.0 0.0 190.8 0.0 -4,0 0.0003 1 -2.0 MINOR ENSMUSG00000041966 Dcaf17 ENSMUST00000130292 ENSMUSP00000117830 TRANSLATION protein_coding start/stop - 1 405.0 0.0 0.0 0.0 541.2 0.0 -4,-2 0.0052 1 -2.0 MINOR ENSMUSG00000041966 Dcaf17 ENSMUST00000112159 ENSMUSP00000107785 TRANSLATION protein_coding - CCDS50602.1 1 286.0 0.0 0.0 1.7 321.1 0.0 -4,0 0.0854 1 0.342 MINOR ENSMUSG00000041966 Dcaf17 ENSMUST00000154704 ENSMUSP00000120016 TRANSLATION protein_coding - CCDS50601.1 1 519.0 0.0 0.0 5.1 735.5 0.0 -4,0 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000041966 Dcaf17 ENSMUST00000102701 ENSMUSP00000099762 TRANSLATION protein_coding - CCDS16111.1 1 505.0 0.0 0.0 0.1 677.9 0.0 -4,0 0.1319 1 2.544 MINOR ENSMUSG00000041966 Dcaf17 ENSMUST00000132619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041966 Dcaf17 ENSMUST00000136299 ENSMUSP00000114459 TRANSLATION nonsense_mediated_decay start - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000041966 Dcaf17 ENSMUST00000064141 ENSMUSP00000065624 TRANSLATION protein_coding - CCDS50601.1 1 519.0 0.0 0.0 5.1 735.5 0.0 -4,0 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000041966 Dcaf17 ENSMUST00000135357 ENSMUSP00000118011 TRANSLATION protein_coding stop - 3 157.0 0.0 0.0 0.0 219.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027584 Oprl1 ENSMUST00000184127 ENSMUSP00000139119 TRANSLATION nonsense_mediated_decay - - 1 111.0 0.0 1.0 0.0 0.0 4.0 -4,-7 0.0039 - -2.0 MINOR ENSMUSG00000027584 Oprl1 ENSMUST00000148334 ENSMUSP00000118664 TRANSLATION protein_coding stop - 3 141.0 0.0 2.33 0.0 71.9 4.0 -4,-6 0.0022 - -2.0 MINOR ENSMUSG00000027584 Oprl1 ENSMUST00000108767 ENSMUSP00000104398 TRANSLATION protein_coding - CCDS17222.1 1 367.0 0.0 4.33 7.6 207.7 12.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027584 Oprl1 ENSMUST00000151241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027584 Oprl1 ENSMUST00000108768 ENSMUSP00000104399 TRANSLATION protein_coding - CCDS17222.1 1 367.0 0.0 4.33 7.6 207.7 12.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027584 Oprl1 ENSMUST00000184795 ENSMUSP00000138979 TRANSLATION nonsense_mediated_decay - - 1 94.0 0.0 1.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000027584 Oprl1 ENSMUST00000071585 ENSMUSP00000071513 TRANSLATION protein_coding - CCDS17222.1 1 367.0 0.0 4.33 7.6 207.7 12.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027584 Oprl1 ENSMUST00000108763 ENSMUSP00000104394 TRANSLATION protein_coding - CCDS84606.1 1 353.0 0.0 3.528 0.0 193.3 8.0 -4,-7 0.0627 - 9.534 MINOR ENSMUSG00000027584 Oprl1 ENSMUST00000126835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027584 Oprl1 ENSMUST00000238942 ENSMUSP00000159197 TRANSLATION protein_coding - - - 396.0 0.0 4.33 0.1 207.7 12.0 -4,-7 0.1554 - -2.0 MINOR ENSMUSG00000027584 Oprl1 ENSMUST00000183693 ENSMUSP00000138810 TRANSLATION nonsense_mediated_decay - - 1 95.0 0.0 1.0 0.0 0.0 4.0 -4,-7 0.0024 - -2.0 MINOR ENSMUSG00000027584 Oprl1 ENSMUST00000108766 ENSMUSP00000104397 TRANSLATION protein_coding - - 1 213.0 0.0 3.58 0.0 125.6 8.0 -4,-7 0.003 - 5.574 MINOR ENSMUSG00000027224 Duoxa1 ENSMUST00000028653 ENSMUSP00000028653 TRANSLATION protein_coding - CCDS16661.1 3 341.0 0.0 7.35 10.3 371.7 7.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000027224 Duoxa1 ENSMUST00000147788 ENSMUSP00000116280 TRANSLATION protein_coding stop - 3 134.0 0.0 4.0 0.0 172.3 2.0 -4,-6 0.0015 - -2.0 MINOR ENSMUSG00000027224 Duoxa1 ENSMUST00000148417 ENSMUSP00000116963 TRANSLATION protein_coding stop - 5 209.0 0.0 5.75 0.0 293.5 4.0 -4,-6 0.0041 1 -2.0 MINOR ENSMUSG00000027224 Duoxa1 ENSMUST00000110538 ENSMUSP00000106167 TRANSLATION protein_coding - - 5 296.0 0.0 5.85 2.1 278.6 7.0 -4,-6 0.0652 1 3.768 MINOR ENSMUSG00000027224 Duoxa1 ENSMUST00000155561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027224 Duoxa1 ENSMUST00000110537 ENSMUSP00000106166 TRANSLATION protein_coding - CCDS16661.1 1 341.0 0.0 7.35 10.3 371.7 7.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000027224 Duoxa1 ENSMUST00000154412 ENSMUSP00000116911 TRANSLATION protein_coding stop - 5 100.0 0.0 2.75 0.0 110.0 2.0 -4,-6 0.0015 - -2.0 MINOR ENSMUSG00000055926 Gm14137 ENSMUST00000069711 ENSMUSP00000068999 TRANSLATION protein_coding - CCDS16594.1 - 181.0 0.0 0.0 0.1 0.0 0.0 -4,0 0.2286 - 0.0 MINOR ENSMUSG00000055926 Gm14137 ENSMUST00000239130 ENSMUSP00000159192 TRANSLATION protein_coding - - - 175.0 0.0 0.0 9.3 0.0 0.0 -4,0 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000026958 Dpp7 ENSMUST00000149953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026958 Dpp7 ENSMUST00000028332 ENSMUSP00000028332 TRANSLATION protein_coding - CCDS15766.1 1 506.0 2.0 11.0 0.3 291.4 0.0 0,-3 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000026958 Dpp7 ENSMUST00000150305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026958 Dpp7 ENSMUST00000135473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026958 Dpp7 ENSMUST00000131665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026958 Dpp7 ENSMUST00000133253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026958 Dpp7 ENSMUST00000139108 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026958 Dpp7 ENSMUST00000144218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026958 Dpp7 ENSMUST00000139971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026958 Dpp7 ENSMUST00000125248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060827 Or4s2b ENSMUST00000213893 ENSMUSP00000150185 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 13.8 169.8 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000060827 Or4s2b ENSMUST00000081697 ENSMUSP00000080399 TRANSLATION protein_coding - CCDS16342.1 - 318.0 0.0 1.0 2.4 169.8 6.0 -4,-7 0.5727 - 12.436 MINOR ENSMUSG00000060827 Or4s2b ENSMUST00000216767 ENSMUSP00000148918 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 13.8 169.8 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000060827 Or4s2b ENSMUST00000217271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015094 Npdc1 ENSMUST00000133409 ENSMUSP00000117773 TRANSLATION protein_coding start - 3 274.0 0.0 0.0 0.0 516.3 1.0 -4,-5 0.0093 6 -2.0 MINOR ENSMUSG00000015094 Npdc1 ENSMUST00000156824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015094 Npdc1 ENSMUST00000071442 ENSMUSP00000071387 TRANSLATION protein_coding - CCDS15771.1 1 332.0 0.0 0.0 1.1 691.2 3.0 3,-2 0.292 8 2.716 MINOR ENSMUSG00000015094 Npdc1 ENSMUST00000138651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015094 Npdc1 ENSMUST00000132287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015094 Npdc1 ENSMUST00000144413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015094 Npdc1 ENSMUST00000128144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015094 Npdc1 ENSMUST00000131185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015094 Npdc1 ENSMUST00000141567 ENSMUSP00000116275 TRANSLATION protein_coding stop - 3 231.0 0.0 0.0 0.0 441.1 3.0 3,-2 0.0109 4 -2.0 MINOR ENSMUSG00000015094 Npdc1 ENSMUST00000124277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015094 Npdc1 ENSMUST00000154809 ENSMUSP00000123386 TRANSLATION protein_coding stop - 3 141.0 0.0 0.0 0.0 285.8 0.0 3,-2 0.0049 3 -2.0 MINOR ENSMUSG00000015094 Npdc1 ENSMUST00000055921 ENSMUSP00000049602 TRANSLATION protein_coding - - 5 341.0 0.0 0.0 0.0 762.6 3.0 3,-2 0.8391 8 6.0 PRINCIPAL:1 ENSMUSG00000015094 Npdc1 ENSMUST00000136138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015094 Npdc1 ENSMUST00000141106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075088 Or4a2 ENSMUST00000099780 ENSMUSP00000097368 TRANSLATION protein_coding - CCDS16379.1 - 305.0 0.0 1.0 10.4 157.5 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075088 Or4a2 ENSMUST00000216762 ENSMUSP00000150225 TRANSLATION protein_coding - CCDS16379.1 5 305.0 0.0 1.0 10.4 157.5 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075088 Or4a2 ENSMUST00000217181 ENSMUSP00000149898 TRANSLATION protein_coding - CCDS16379.1 5 305.0 0.0 1.0 10.4 157.5 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027088 Phospho2 ENSMUST00000131100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027088 Phospho2 ENSMUST00000112266 ENSMUSP00000107885 TRANSLATION protein_coding - CCDS16099.1 3 241.0 9.0 2.0 18.3 320.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000027088 Phospho2 ENSMUST00000151298 ENSMUSP00000118021 TRANSLATION protein_coding stop - 2 50.0 4.0 1.0 0.0 61.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027088 Phospho2 ENSMUST00000180290 ENSMUSP00000136471 TRANSLATION protein_coding - CCDS16099.1 1 241.0 9.0 2.0 18.3 320.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000027088 Phospho2 ENSMUST00000128765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027088 Phospho2 ENSMUST00000028494 ENSMUSP00000028494 TRANSLATION protein_coding - CCDS16099.1 1 241.0 9.0 2.0 18.3 320.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000055612 Cdca7 ENSMUST00000137880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055612 Cdca7 ENSMUST00000127344 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055612 Cdca7 ENSMUST00000157019 ENSMUSP00000121263 TRANSLATION protein_coding stop - 5 192.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000055612 Cdca7 ENSMUST00000102691 ENSMUSP00000099752 TRANSLATION protein_coding - CCDS16121.1 1 382.0 7.0 0.0 1.6 125.1 0.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000055612 Cdca7 ENSMUST00000130730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036992 Nxt1 ENSMUST00000109961 ENSMUSP00000105587 TRANSLATION protein_coding - CCDS16840.1 2 140.0 0.0 1.0 31.9 106.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000036992 Nxt1 ENSMUST00000047177 ENSMUSP00000038329 TRANSLATION protein_coding - CCDS16840.1 1 140.0 0.0 1.0 31.9 106.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000042814 Mcts2 ENSMUST00000062148 ENSMUSP00000100534 TRANSLATION protein_coding - CCDS38281.1 - 181.0 0.0 1.0 34.9 70.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000027107 Chrna1 ENSMUST00000028515 ENSMUSP00000028515 TRANSLATION protein_coding - CCDS16132.1 1 457.0 3.0 6.5 15.5 460.1 0.0 4,-1 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000006471 Ndor1 ENSMUST00000114349 ENSMUSP00000109989 TRANSLATION protein_coding - CCDS38069.1 1 598.0 50.0 10.562 0.0 306.7 0.0 -2,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000006471 Ndor1 ENSMUST00000137355 - NO_TRANSLATION retained_intron ENSMUSG00000006471 Ndor1 ENSMUST00000148589 ENSMUSP00000123958 TRANSLATION nonsense_mediated_decay - - 2 82.0 6.0 1.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000006471 Ndor1 ENSMUST00000141808 ENSMUSP00000123247 TRANSLATION protein_coding start/stop - 3 225.0 20.0 4.182 0.0 79.1 0.0 -2,-5 0.0 3 -2.0 MINOR ENSMUSG00000006471 Ndor1 ENSMUST00000132128 ENSMUSP00000125018 TRANSLATION nonsense_mediated_decay - - 3 71.0 11.0 1.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000006471 Ndor1 ENSMUST00000129705 - NO_TRANSLATION retained_intron ENSMUSG00000006471 Ndor1 ENSMUST00000132591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006471 Ndor1 ENSMUST00000147866 ENSMUSP00000125259 TRANSLATION protein_coding stop - 5 212.0 24.0 3.5 0.0 76.3 0.0 -2,-5 0.0002 1 -2.0 MINOR ENSMUSG00000006471 Ndor1 ENSMUST00000123472 - NO_TRANSLATION retained_intron ENSMUSG00000006471 Ndor1 ENSMUST00000100329 ENSMUSP00000097903 TRANSLATION protein_coding - CCDS57157.1 1 531.0 48.0 8.68 0.0 279.7 0.0 -2,-5 0.028 3 11.286 MINOR ENSMUSG00000055088 Or1n2 ENSMUST00000217479 ENSMUSP00000149298 TRANSLATION protein_coding - CCDS15987.1 5 317.0 0.0 1.0 8.2 209.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000055088 Or1n2 ENSMUST00000068475 ENSMUSP00000068986 TRANSLATION protein_coding - CCDS15987.1 - 317.0 0.0 1.0 8.2 209.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000055088 Or1n2 ENSMUST00000218102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075137 Or5d36 ENSMUST00000099835 ENSMUSP00000097423 TRANSLATION protein_coding - CCDS16324.1 - 316.0 0.0 1.0 3.4 151.2 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075137 Or5d36 ENSMUST00000215268 ENSMUSP00000149399 TRANSLATION protein_coding - CCDS16324.1 5 316.0 0.0 1.0 3.4 151.2 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000110819 Or4a79 ENSMUST00000186710 ENSMUSP00000140045 TRANSLATION protein_coding - CCDS16391.1 - 314.0 0.0 1.0 5.9 165.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000110819 Or4a79 ENSMUST00000213196 ENSMUSP00000151036 TRANSLATION protein_coding - CCDS16391.1 5 314.0 0.0 1.0 5.9 165.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000110819 Or4a79 ENSMUST00000216203 ENSMUSP00000150304 TRANSLATION protein_coding - CCDS16391.1 3 314.0 0.0 1.0 5.9 165.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075104 Or4c114 ENSMUST00000213724 ENSMUSP00000151003 TRANSLATION protein_coding - CCDS16364.1 5 311.0 0.0 1.0 8.3 156.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075104 Or4c114 ENSMUST00000215225 ENSMUSP00000149573 TRANSLATION protein_coding - CCDS16364.1 5 311.0 0.0 1.0 8.3 156.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075104 Or4c114 ENSMUST00000214442 ENSMUSP00000150101 TRANSLATION protein_coding - CCDS16364.1 5 311.0 0.0 1.0 8.3 156.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075104 Or4c114 ENSMUST00000217421 ENSMUSP00000150043 TRANSLATION protein_coding - CCDS16364.1 5 311.0 0.0 1.0 8.3 156.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075104 Or4c114 ENSMUST00000099797 ENSMUSP00000097385 TRANSLATION protein_coding - CCDS16364.1 - 311.0 0.0 1.0 8.3 156.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068129 Cst7 ENSMUST00000089200 ENSMUSP00000086606 TRANSLATION protein_coding - CCDS16857.2 1 144.0 0.0 2.87375 1.4 56.8 0.0 4,-1 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000051396 Msantd7 ENSMUST00000124331 ENSMUSP00000119850 TRANSLATION protein_coding - - 1 361.0 0.0 0.0 6.2 59.0 0.0 -4,-2 0.9531 - 8.0 PRINCIPAL:1 ENSMUSG00000051396 Msantd7 ENSMUST00000140494 ENSMUSP00000120385 TRANSLATION protein_coding - - 2 361.0 0.0 0.0 6.2 59.0 0.0 -4,-2 0.9531 - 8.0 PRINCIPAL:1 ENSMUSG00000015932 Dstn ENSMUST00000103172 ENSMUSP00000099461 TRANSLATION protein_coding - CCDS16812.1 1 165.0 0.0 2.75 34.9 101.9 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000047250 Ptgs1 ENSMUST00000149930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047250 Ptgs1 ENSMUST00000133777 - NO_TRANSLATION retained_intron ENSMUSG00000047250 Ptgs1 ENSMUST00000151351 - NO_TRANSLATION retained_intron ENSMUSG00000047250 Ptgs1 ENSMUST00000144319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047250 Ptgs1 ENSMUST00000062069 ENSMUSP00000059977 TRANSLATION protein_coding - CCDS15970.1 1 602.0 0.0 8.75 1.2 150.3 0.0 3,-2 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000067704 Wfdc13 ENSMUST00000088260 ENSMUSP00000085594 TRANSLATION protein_coding - CCDS38327.1 1 81.0 0.0 1.0 0.1 0.0 0.0 4,-1 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000027225 Duoxa2 ENSMUST00000028656 ENSMUSP00000028656 TRANSLATION protein_coding - CCDS16660.1 1 320.0 0.0 5.35 9.7 369.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050373 Snx21 ENSMUST00000174342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050373 Snx21 ENSMUST00000056181 ENSMUSP00000054137 TRANSLATION protein_coding - CCDS38328.1 1 363.0 0.0 2.58 9.0 54.6 0.0 -4,-7 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000050373 Snx21 ENSMUST00000173945 - NO_TRANSLATION retained_intron ENSMUSG00000050373 Snx21 ENSMUST00000174070 ENSMUSP00000133344 TRANSLATION protein_coding - - 5 148.0 0.0 0.5 2.3 0.0 0.0 -4,-7 0.0651 2 1.65 MINOR ENSMUSG00000050373 Snx21 ENSMUST00000172577 ENSMUSP00000134133 TRANSLATION protein_coding - - 2 142.0 0.0 0.5 2.3 0.0 0.0 -4,-7 0.066 2 1.65 MINOR ENSMUSG00000050373 Snx21 ENSMUST00000140519 ENSMUSP00000134256 TRANSLATION protein_coding start - 3 48.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000050373 Snx21 ENSMUST00000152471 ENSMUSP00000133914 TRANSLATION protein_coding - - 1 151.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 2 1.164 MINOR ENSMUSG00000017999 Ddx27 ENSMUST00000127468 - NO_TRANSLATION retained_intron ENSMUSG00000017999 Ddx27 ENSMUST00000176066 ENSMUSP00000135815 TRANSLATION protein_coding stop - 5 310.0 11.0 2.632 0.0 62.7 0.0 -4,-5 0.0009 8 -2.0 MINOR ENSMUSG00000017999 Ddx27 ENSMUST00000138969 - NO_TRANSLATION retained_intron ENSMUSG00000017999 Ddx27 ENSMUST00000150571 ENSMUSP00000135265 TRANSLATION protein_coding - - 1 292.0 11.0 2.962 0.0 67.3 0.0 -4,-5 0.0 8 4.668 MINOR ENSMUSG00000017999 Ddx27 ENSMUST00000126409 - NO_TRANSLATION retained_intron ENSMUSG00000017999 Ddx27 ENSMUST00000018143 ENSMUSP00000018143 TRANSLATION protein_coding - CCDS38336.1 1 760.0 13.0 8.212 8.6 250.8 0.0 -4,-5 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000026830 Ermn ENSMUST00000090940 ENSMUSP00000088458 TRANSLATION protein_coding - CCDS16047.1 1 281.0 0.0 0.0 0.3 0.0 0.0 -4,-5 0.8854 8 0.0 PRINCIPAL:1 ENSMUSG00000074676 Foxs1 ENSMUST00000099200 ENSMUSP00000096806 TRANSLATION protein_coding - CCDS16901.1 - 329.0 0.0 0.6 3.2 129.3 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000039117 Taf4 ENSMUST00000155335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039117 Taf4 ENSMUST00000041618 ENSMUSP00000038610 TRANSLATION protein_coding - CCDS38373.1 1 1042.0 0.0 5.4 0.0 394.8 0.0 -4,-5 1.0 16 8.0 PRINCIPAL:2 ENSMUSG00000039117 Taf4 ENSMUST00000227325 ENSMUSP00000153863 TRANSLATION protein_coding - - - 1030.0 0.0 5.4 0.0 394.8 0.0 -4,-5 0.302 15 8.0 ALTERNATIVE:2 ENSMUSG00000039117 Taf4 ENSMUST00000154961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055371 Stam2 ENSMUST00000155516 ENSMUSP00000119203 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055371 Stam2 ENSMUST00000138290 ENSMUSP00000114620 TRANSLATION protein_coding stop - 5 65.0 0.0 2.0 0.0 79.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055371 Stam2 ENSMUST00000150582 - NO_TRANSLATION retained_intron ENSMUSG00000055371 Stam2 ENSMUST00000102759 ENSMUSP00000099820 TRANSLATION protein_coding - CCDS16037.1 1 523.0 0.0 8.57 0.0 229.9 0.0 -4,-6 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000055371 Stam2 ENSMUST00000127316 ENSMUSP00000121898 TRANSLATION protein_coding - - 1 415.0 0.0 7.82 0.0 148.5 0.0 -4,-5 0.0007 9 5.616 MINOR ENSMUSG00000026985 Il36b ENSMUST00000028363 ENSMUSP00000028363 TRANSLATION protein_coding - CCDS38063.1 1 183.0 0.0 3.0 0.1 78.5 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000063972 Nr6a1 ENSMUST00000128688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063972 Nr6a1 ENSMUST00000123099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063972 Nr6a1 ENSMUST00000123342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063972 Nr6a1 ENSMUST00000112877 ENSMUSP00000108498 TRANSLATION protein_coding - CCDS16012.1 1 495.0 8.0 2.995 3.5 167.6 0.0 -4,-5 0.3836 - 18.636 MINOR ENSMUSG00000063972 Nr6a1 ENSMUST00000142113 ENSMUSP00000121234 TRANSLATION protein_coding stop - 3 235.0 8.0 1.5 0.0 100.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063972 Nr6a1 ENSMUST00000132636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063972 Nr6a1 ENSMUST00000203202 - NO_TRANSLATION retained_intron ENSMUSG00000063972 Nr6a1 ENSMUST00000076275 ENSMUSP00000075624 TRANSLATION protein_coding - CCDS16012.1 1 495.0 8.0 2.995 3.5 167.6 0.0 -4,-5 0.3836 - 18.636 MINOR ENSMUSG00000063972 Nr6a1 ENSMUST00000168098 ENSMUSP00000126009 TRANSLATION protein_coding - CCDS50581.1 5 438.0 8.0 2.995 12.8 167.6 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000063972 Nr6a1 ENSMUST00000142130 ENSMUSP00000115164 TRANSLATION protein_coding stop - 5 220.0 8.0 1.5 0.0 100.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063972 Nr6a1 ENSMUST00000156301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026864 Hspa5 ENSMUST00000145466 - NO_TRANSLATION retained_intron ENSMUSG00000026864 Hspa5 ENSMUST00000100171 ENSMUSP00000097747 TRANSLATION protein_coding - CCDS15950.1 1 655.0 20.0 7.8 16.4 903.4 0.0 4,-1 1.0 37 22.0 PRINCIPAL:1 ENSMUSG00000026864 Hspa5 ENSMUST00000129333 - NO_TRANSLATION retained_intron ENSMUSG00000026864 Hspa5 ENSMUST00000137145 ENSMUSP00000141966 TRANSLATION nonsense_mediated_decay - - 5 42.0 2.0 0.0 0.0 0.0 0.0 4,-1 0.0027 - -2.0 MINOR ENSMUSG00000026864 Hspa5 ENSMUST00000155595 - NO_TRANSLATION retained_intron ENSMUSG00000026864 Hspa5 ENSMUST00000028222 ENSMUSP00000028222 TRANSLATION protein_coding - CCDS15950.1 1 655.0 20.0 7.8 16.4 903.4 0.0 4,-1 1.0 37 22.0 PRINCIPAL:1 ENSMUSG00000049999 Ppp1r3d ENSMUST00000058678 ENSMUSP00000061402 TRANSLATION protein_coding - CCDS38371.1 - 279.0 0.0 0.8 0.4 94.6 0.0 -4,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000070719 Pla2g4d ENSMUST00000094665 ENSMUSP00000092252 TRANSLATION protein_coding - CCDS16617.1 1 825.0 8.0 13.45 0.1 180.1 0.0 -4,-7 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000067998 Bpifb9a ENSMUST00000088924 ENSMUSP00000086314 TRANSLATION protein_coding - CCDS50761.1 1 591.0 0.0 0.0 0.1 33.1 0.0 1,-3 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000067998 Bpifb9a ENSMUST00000126084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067998 Bpifb9a ENSMUST00000147299 - NO_TRANSLATION retained_intron ENSMUSG00000027378 Nphp1 ENSMUST00000148033 - NO_TRANSLATION retained_intron ENSMUSG00000027378 Nphp1 ENSMUST00000028857 ENSMUSP00000028857 TRANSLATION protein_coding - CCDS16709.1 1 691.0 0.0 4.75 0.0 56.6 0.0 -4,-2 1.0 7 8.0 PRINCIPAL:4 ENSMUSG00000027378 Nphp1 ENSMUST00000110357 ENSMUSP00000105986 TRANSLATION protein_coding - CCDS71140.1 1 690.0 0.0 4.75 0.0 56.6 0.0 -4,-2 0.9468 7 8.0 ALTERNATIVE:2 ENSMUSG00000027378 Nphp1 ENSMUST00000144938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049018 Or5c1 ENSMUST00000053990 ENSMUSP00000054082 TRANSLATION protein_coding - CCDS15997.1 - 327.0 0.0 1.0 1.8 153.6 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000049018 Or5c1 ENSMUST00000217299 ENSMUSP00000149348 TRANSLATION protein_coding - CCDS15997.1 5 327.0 0.0 1.0 1.8 153.6 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000038567 Cyp24a1 ENSMUST00000038824 ENSMUSP00000047954 TRANSLATION protein_coding - CCDS17122.1 1 514.0 29.0 10.55 9.1 357.3 0.0 -4,-1 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000038324 Trpc4ap ENSMUST00000130755 - NO_TRANSLATION retained_intron ENSMUSG00000038324 Trpc4ap ENSMUST00000152548 - NO_TRANSLATION retained_intron ENSMUSG00000038324 Trpc4ap ENSMUST00000147913 - NO_TRANSLATION retained_intron ENSMUSG00000038324 Trpc4ap ENSMUST00000140370 - NO_TRANSLATION retained_intron ENSMUSG00000038324 Trpc4ap ENSMUST00000103140 ENSMUSP00000099429 TRANSLATION protein_coding - CCDS16952.1 1 789.0 0.0 0.0 2.0 438.1 0.0 -2,0 0.8358 6 2.909 ALTERNATIVE:2 ENSMUSG00000038324 Trpc4ap ENSMUST00000143115 - NO_TRANSLATION retained_intron ENSMUSG00000038324 Trpc4ap ENSMUST00000153246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038324 Trpc4ap ENSMUST00000146484 - NO_TRANSLATION retained_intron ENSMUSG00000038324 Trpc4ap ENSMUST00000041059 ENSMUSP00000037574 TRANSLATION protein_coding - CCDS50769.1 1 797.0 0.0 0.0 2.1 438.1 0.0 -2,0 1.0 6 3.0 PRINCIPAL:4 ENSMUSG00000038324 Trpc4ap ENSMUST00000136764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074582 Arfgef2 ENSMUST00000144847 ENSMUSP00000131572 TRANSLATION protein_coding start/stop - 5 283.0 0.0 2.0 0.0 89.8 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000074582 Arfgef2 ENSMUST00000099078 ENSMUSP00000096677 TRANSLATION protein_coding - CCDS38335.1 1 1792.0 0.0 7.915 7.4 653.3 0.0 -4,-6 1.0 40 14.0 PRINCIPAL:1 ENSMUSG00000075127 Or4p18 ENSMUST00000213157 ENSMUSP00000151174 TRANSLATION protein_coding - CCDS16333.1 5 307.0 0.0 1.0 8.1 159.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075127 Or4p18 ENSMUST00000099825 ENSMUSP00000097413 TRANSLATION protein_coding - CCDS16333.1 - 307.0 0.0 1.0 8.1 159.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075084 Or4a71 ENSMUST00000216635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075084 Or4a71 ENSMUST00000144885 ENSMUSP00000149464 TRANSLATION protein_coding - CCDS16383.1 3 305.0 0.0 1.0 8.9 153.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075084 Or4a71 ENSMUST00000099775 ENSMUSP00000097363 TRANSLATION protein_coding - CCDS16383.1 - 305.0 0.0 1.0 8.9 153.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057149 Or4k51 ENSMUST00000207590 ENSMUSP00000146530 TRANSLATION protein_coding - CCDS16532.1 2 312.0 0.0 1.0 9.4 179.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057149 Or4k51 ENSMUST00000080094 ENSMUSP00000078993 TRANSLATION protein_coding - CCDS16532.1 - 312.0 0.0 1.0 9.4 179.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096822 Or1j15 ENSMUST00000215879 ENSMUSP00000151202 TRANSLATION protein_coding - CCDS15976.1 5 309.0 0.0 1.0 6.1 188.4 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096822 Or1j15 ENSMUST00000075474 ENSMUSP00000074919 TRANSLATION protein_coding - CCDS15976.1 - 309.0 0.0 1.0 6.1 188.4 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038383 Pigu ENSMUST00000165234 ENSMUSP00000126236 TRANSLATION protein_coding - - 5 434.0 0.0 11.25 8.2 382.0 4.0 1,-2 0.7916 4 8.601 ALTERNATIVE:1 ENSMUSG00000038383 Pigu ENSMUST00000124419 - NO_TRANSLATION retained_intron ENSMUSG00000038383 Pigu ENSMUST00000077626 ENSMUSP00000076816 TRANSLATION protein_coding - CCDS16946.1 1 435.0 0.0 11.25 9.3 389.2 4.0 1,-2 1.0 4 9.0 PRINCIPAL:4 ENSMUSG00000038383 Pigu ENSMUST00000139854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038383 Pigu ENSMUST00000125334 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079502 Cfap77 ENSMUST00000189027 ENSMUSP00000140084 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000079502 Cfap77 ENSMUST00000190049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079502 Cfap77 ENSMUST00000113843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079502 Cfap77 ENSMUST00000189711 ENSMUSP00000140645 TRANSLATION protein_coding - - 5 283.0 0.0 0.0 6.0 167.1 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000079502 Cfap77 ENSMUST00000157048 ENSMUSP00000125742 TRANSLATION protein_coding - CCDS50551.1 1 271.0 0.0 0.0 0.0 167.1 0.0 -4,-5 0.2146 3 6.0 MINOR ENSMUSG00000037262 Kin ENSMUST00000042512 ENSMUSP00000043614 TRANSLATION protein_coding - CCDS15676.1 1 391.0 4.0 3.3 32.1 169.6 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000037262 Kin ENSMUST00000142773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037262 Kin ENSMUST00000142599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016995 Matn4 ENSMUST00000154940 - NO_TRANSLATION retained_intron ENSMUSG00000016995 Matn4 ENSMUST00000103103 ENSMUSP00000099392 TRANSLATION protein_coding - CCDS17034.1 1 624.0 13.0 5.698 4.8 437.1 0.0 2,-2 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000016995 Matn4 ENSMUST00000109359 ENSMUSP00000104983 TRANSLATION protein_coding - - 5 583.0 13.0 4.898 1.8 398.3 0.0 2,-2 0.1129 12 14.492 MINOR ENSMUSG00000016995 Matn4 ENSMUST00000103104 ENSMUSP00000099393 TRANSLATION protein_coding - CCDS17034.1 1 624.0 13.0 5.698 4.8 437.1 0.0 2,-2 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000016995 Matn4 ENSMUST00000109358 ENSMUSP00000104982 TRANSLATION protein_coding - - 5 542.0 10.0 3.898 0.0 360.3 0.0 2,-2 0.0083 11 7.794 MINOR ENSMUSG00000075101 Or4c117 ENSMUST00000214027 ENSMUSP00000149001 TRANSLATION protein_coding - CCDS16367.1 5 311.0 0.0 1.0 8.3 151.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075101 Or4c117 ENSMUST00000215816 ENSMUSP00000150144 TRANSLATION protein_coding - CCDS16367.1 5 311.0 0.0 1.0 8.3 151.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075101 Or4c117 ENSMUST00000099794 ENSMUSP00000097382 TRANSLATION protein_coding - CCDS16367.1 - 311.0 0.0 1.0 8.3 151.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000017697 Ada ENSMUST00000156939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017697 Ada ENSMUST00000017841 ENSMUSP00000017841 TRANSLATION protein_coding - CCDS17015.1 1 352.0 4.0 9.33 0.1 366.7 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000027315 Spint1 ENSMUST00000134872 - NO_TRANSLATION retained_intron ENSMUSG00000027315 Spint1 ENSMUST00000110816 ENSMUSP00000106440 TRANSLATION protein_coding - CCDS16597.1 5 507.0 4.0 4.16 6.4 245.4 1.0 3,-3 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000027315 Spint1 ENSMUST00000110817 ENSMUSP00000106441 TRANSLATION protein_coding - CCDS16597.1 1 507.0 4.0 4.16 6.4 245.4 1.0 3,-3 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000027315 Spint1 ENSMUST00000139903 - NO_TRANSLATION retained_intron ENSMUSG00000027315 Spint1 ENSMUST00000028783 ENSMUSP00000028783 TRANSLATION protein_coding - CCDS16597.1 1 507.0 4.0 4.16 6.4 245.4 1.0 3,-3 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000111179 Or5g27 ENSMUST00000077075 ENSMUSP00000076330 TRANSLATION protein_coding - CCDS16209.1 - 314.0 0.0 1.0 11.0 176.6 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026707 Nsun6 ENSMUST00000195749 ENSMUSP00000141924 TRANSLATION protein_coding - CCDS15703.1 5 476.0 14.0 10.68 4.7 155.0 0.0 -4,-5 1.0 11 19.976 PRINCIPAL:1 ENSMUSG00000026707 Nsun6 ENSMUST00000114713 ENSMUSP00000110361 TRANSLATION protein_coding - CCDS50507.1 1 115.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0085 1 0.0 MINOR ENSMUSG00000026707 Nsun6 ENSMUST00000028034 ENSMUSP00000028034 TRANSLATION protein_coding - CCDS15703.1 1 476.0 14.0 10.68 4.7 155.0 0.0 -4,-5 1.0 11 19.976 PRINCIPAL:1 ENSMUSG00000026707 Nsun6 ENSMUST00000192769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026707 Nsun6 ENSMUST00000114715 ENSMUSP00000110363 TRANSLATION protein_coding - CCDS50506.1 1 425.0 14.0 9.18 0.0 155.4 0.0 -4,-7 0.0318 11 15.0 MINOR ENSMUSG00000026707 Nsun6 ENSMUST00000191911 - NO_TRANSLATION retained_intron ENSMUSG00000026707 Nsun6 ENSMUST00000194429 - NO_TRANSLATION retained_intron ENSMUSG00000026707 Nsun6 ENSMUST00000076435 ENSMUSP00000075766 TRANSLATION protein_coding - CCDS15703.1 1 476.0 14.0 10.68 4.7 155.0 0.0 -4,-5 1.0 11 19.976 PRINCIPAL:1 ENSMUSG00000027513 Pck1 ENSMUST00000150629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027513 Pck1 ENSMUST00000029017 ENSMUSP00000029017 TRANSLATION protein_coding - CCDS17141.1 1 622.0 33.0 9.0 33.9 560.2 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000027513 Pck1 ENSMUST00000151269 - NO_TRANSLATION retained_intron ENSMUSG00000027513 Pck1 ENSMUST00000136885 - NO_TRANSLATION retained_intron ENSMUSG00000002731 Prkra ENSMUST00000140493 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002731 Prkra ENSMUST00000002808 ENSMUSP00000002808 TRANSLATION protein_coding - CCDS16159.1 1 313.0 0.0 5.35 11.7 132.1 0.0 -4,-7 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000075090 Or4a15 ENSMUST00000137692 ENSMUSP00000149303 TRANSLATION protein_coding - CCDS16377.1 3 314.0 0.0 1.0 4.6 154.5 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075090 Or4a15 ENSMUST00000099783 ENSMUSP00000097371 TRANSLATION protein_coding - CCDS16377.1 - 314.0 0.0 1.0 4.6 154.5 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075090 Or4a15 ENSMUST00000111543 ENSMUSP00000107168 TRANSLATION protein_coding - CCDS16377.1 2 314.0 0.0 1.0 4.6 154.5 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063145 Bbs5 ENSMUST00000149276 - NO_TRANSLATION retained_intron ENSMUSG00000063145 Bbs5 ENSMUST00000074963 ENSMUSP00000074494 TRANSLATION protein_coding - CCDS16094.1 1 341.0 0.0 8.455 28.3 524.1 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000063145 Bbs5 ENSMUST00000143165 - NO_TRANSLATION retained_intron ENSMUSG00000063145 Bbs5 ENSMUST00000130061 - NO_TRANSLATION retained_intron ENSMUSG00000063145 Bbs5 ENSMUST00000112286 ENSMUSP00000107905 TRANSLATION protein_coding - - 5 320.0 0.0 7.705 4.2 402.6 0.0 -4,-5 0.0845 3 4.968 MINOR ENSMUSG00000063145 Bbs5 ENSMUST00000127806 ENSMUSP00000121691 TRANSLATION protein_coding start - 5 92.0 0.0 1.705 0.0 59.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000063145 Bbs5 ENSMUST00000144240 - NO_TRANSLATION retained_intron ENSMUSG00000063145 Bbs5 ENSMUST00000134659 ENSMUSP00000119377 TRANSLATION nonsense_mediated_decay - - 1 88.0 0.0 2.75 0.0 120.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027281 Slx4ip ENSMUST00000180277 ENSMUSP00000136131 TRANSLATION protein_coding - CCDS16795.1 3 413.0 0.0 0.0 0.4 553.8 0.0 -4,-7 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000027281 Slx4ip ENSMUST00000135260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027281 Slx4ip ENSMUST00000130856 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027281 Slx4ip ENSMUST00000141463 ENSMUSP00000117485 TRANSLATION protein_coding stop - 5 55.0 0.0 0.0 0.0 60.7 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000027281 Slx4ip ENSMUST00000099311 ENSMUSP00000096914 TRANSLATION protein_coding - CCDS16795.1 1 413.0 0.0 0.0 0.4 553.8 0.0 -4,-7 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000027281 Slx4ip ENSMUST00000028737 ENSMUSP00000028737 TRANSLATION protein_coding - CCDS16796.1 1 343.0 0.0 0.0 0.0 334.6 0.0 -4,-7 0.0441 3 0.0 MINOR ENSMUSG00000027329 Spef1 ENSMUST00000110218 ENSMUSP00000105847 TRANSLATION protein_coding - CCDS38245.1 1 234.0 0.0 3.264 10.9 113.6 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000027329 Spef1 ENSMUST00000127987 ENSMUSP00000114178 TRANSLATION protein_coding start - 3 171.0 0.0 3.0 0.0 113.6 0.0 -4,-6 0.0025 4 -2.0 MINOR ENSMUSG00000027329 Spef1 ENSMUST00000028801 ENSMUSP00000028801 TRANSLATION protein_coding - CCDS38245.1 1 234.0 0.0 3.264 10.9 113.6 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000027007 Itprid2 ENSMUST00000111788 ENSMUSP00000107418 TRANSLATION protein_coding - - 5 1219.0 0.0 0.0 0.0 463.1 0.0 -4,-5 0.3203 24 2.0 ALTERNATIVE:2 ENSMUSG00000027007 Itprid2 ENSMUST00000111785 ENSMUSP00000107415 TRANSLATION protein_coding - CCDS16170.1 1 1252.0 0.0 0.0 0.1 463.1 0.0 -4,-5 1.0 25 2.0 PRINCIPAL:2 ENSMUSG00000027007 Itprid2 ENSMUST00000111784 ENSMUSP00000107414 TRANSLATION protein_coding - - 5 1230.0 0.0 0.0 0.0 463.1 0.0 -4,-5 0.3479 25 2.0 ALTERNATIVE:2 ENSMUSG00000027007 Itprid2 ENSMUST00000124938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027007 Itprid2 ENSMUST00000133266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039943 Plcb4 ENSMUST00000134310 ENSMUSP00000117638 TRANSLATION protein_coding stop - 1 883.0 10.0 13.175 0.0 437.2 0.0 -4,-5 0.0295 28 -2.0 MINOR ENSMUSG00000039943 Plcb4 ENSMUST00000137969 - NO_TRANSLATION retained_intron ENSMUSG00000039943 Plcb4 ENSMUST00000127729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039943 Plcb4 ENSMUST00000127044 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039943 Plcb4 ENSMUST00000141025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039943 Plcb4 ENSMUST00000035646 ENSMUSP00000038409 TRANSLATION protein_coding - CCDS16788.1 5 1175.0 10.0 19.6325 10.6 502.5 0.0 -4,-5 1.0 33 21.0 PRINCIPAL:1 ENSMUSG00000039943 Plcb4 ENSMUST00000184371 ENSMUSP00000139274 TRANSLATION nonsense_mediated_decay - - 5 1022.0 10.0 15.5525 0.0 502.5 0.0 -4,-5 0.1053 30 -2.0 MINOR ENSMUSG00000039943 Plcb4 ENSMUST00000132686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039943 Plcb4 ENSMUST00000147122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039943 Plcb4 ENSMUST00000146018 - NO_TRANSLATION retained_intron ENSMUSG00000039943 Plcb4 ENSMUST00000147744 ENSMUSP00000117578 TRANSLATION protein_coding start - 1 255.0 0.0 4.7075 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039943 Plcb4 ENSMUST00000144931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039943 Plcb4 ENSMUST00000110109 ENSMUSP00000105736 TRANSLATION protein_coding - CCDS16788.1 1 1175.0 10.0 19.6325 10.6 502.5 0.0 -4,-5 1.0 33 21.0 PRINCIPAL:1 ENSMUSG00000039943 Plcb4 ENSMUST00000139480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039943 Plcb4 ENSMUST00000150072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027605 Acss2 ENSMUST00000133654 ENSMUSP00000116501 TRANSLATION nonsense_mediated_decay - - 5 124.0 0.0 0.298 0.0 68.6 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000027605 Acss2 ENSMUST00000029135 ENSMUSP00000029135 TRANSLATION protein_coding - CCDS16950.1 1 701.0 18.0 12.91 10.3 484.2 2.0 -4,-6 1.0 23 16.388 PRINCIPAL:4 ENSMUSG00000027605 Acss2 ENSMUST00000153975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027605 Acss2 ENSMUST00000103142 ENSMUSP00000099431 TRANSLATION protein_coding - - 5 714.0 18.0 13.11 11.0 482.6 2.0 -4,-6 0.8562 23 17.0 ALTERNATIVE:1 ENSMUSG00000027605 Acss2 ENSMUST00000149788 - NO_TRANSLATION retained_intron ENSMUSG00000027605 Acss2 ENSMUST00000143169 - NO_TRANSLATION retained_intron ENSMUSG00000027605 Acss2 ENSMUST00000065973 ENSMUSP00000068776 TRANSLATION protein_coding - - 1 706.0 17.0 12.26 0.0 478.1 2.0 -4,-6 0.0829 22 11.636 MINOR ENSMUSG00000027605 Acss2 ENSMUST00000131054 - NO_TRANSLATION retained_intron ENSMUSG00000027605 Acss2 ENSMUST00000148870 - NO_TRANSLATION retained_intron ENSMUSG00000027605 Acss2 ENSMUST00000151781 ENSMUSP00000122545 TRANSLATION protein_coding start/stop - 5 293.0 14.0 6.21 0.0 163.5 2.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000015083 C8g ENSMUST00000153139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015083 C8g ENSMUST00000149062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015083 C8g ENSMUST00000154984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015083 C8g ENSMUST00000133255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015083 C8g ENSMUST00000150580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015083 C8g ENSMUST00000040042 ENSMUSP00000041855 TRANSLATION protein_coding - CCDS15777.1 1 202.0 0.0 4.85 6.3 66.7 0.0 4,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000015083 C8g ENSMUST00000015227 ENSMUSP00000015227 TRANSLATION protein_coding - CCDS71001.1 1 168.0 0.0 4.35 0.0 66.7 0.0 -2,0 0.0653 4 10.998 MINOR ENSMUSG00000078895 Gm11009 ENSMUST00000108961 ENSMUSP00000104589 TRANSLATION protein_coding start - 5 138.0 7.0 2.75 0.0 89.7 0.0 -4,-5 0.7343 - -2.0 PRINCIPAL:1 ENSMUSG00000013523 Bcas1 ENSMUST00000147577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013523 Bcas1 ENSMUST00000013667 ENSMUSP00000013667 TRANSLATION protein_coding - CCDS17121.1 1 633.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.9093 24 0.0 PRINCIPAL:2 ENSMUSG00000013523 Bcas1 ENSMUST00000154650 ENSMUSP00000122298 TRANSLATION protein_coding start - 1 379.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0509 16 -2.0 MINOR ENSMUSG00000013523 Bcas1 ENSMUST00000133673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013523 Bcas1 ENSMUST00000145920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013523 Bcas1 ENSMUST00000109152 ENSMUSP00000104780 TRANSLATION protein_coding - CCDS50806.1 1 587.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.2518 23 0.0 ALTERNATIVE:2 ENSMUSG00000013523 Bcas1 ENSMUST00000068137 ENSMUSP00000069437 TRANSLATION protein_coding - - 5 577.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.077 22 0.0 ALTERNATIVE:2 ENSMUSG00000013523 Bcas1 ENSMUST00000152461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013523 Bcas1 ENSMUST00000156657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027634 Ndrg3 ENSMUST00000109558 ENSMUSP00000105185 TRANSLATION protein_coding - - 1 253.0 0.0 6.75 0.0 324.6 0.0 -4,-5 0.0 7 1.998 MINOR ENSMUSG00000027634 Ndrg3 ENSMUST00000131955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027634 Ndrg3 ENSMUST00000126627 - NO_TRANSLATION retained_intron ENSMUSG00000027634 Ndrg3 ENSMUST00000072298 ENSMUSP00000072144 TRANSLATION protein_coding - CCDS16971.1 1 375.0 0.0 8.75 24.0 422.0 0.0 -4,-5 0.964 12 11.88 ALTERNATIVE:1 ENSMUSG00000027634 Ndrg3 ENSMUST00000156491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027634 Ndrg3 ENSMUST00000069600 ENSMUSP00000070052 TRANSLATION protein_coding - CCDS50780.1 1 388.0 0.0 8.75 24.7 422.0 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:4 ENSMUSG00000027634 Ndrg3 ENSMUST00000132748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027634 Ndrg3 ENSMUST00000156651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027634 Ndrg3 ENSMUST00000149599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027634 Ndrg3 ENSMUST00000140297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026878 Rab14 ENSMUST00000155483 - NO_TRANSLATION retained_intron ENSMUSG00000026878 Rab14 ENSMUST00000202602 - NO_TRANSLATION retained_intron ENSMUSG00000026878 Rab14 ENSMUST00000230751 ENSMUSP00000155278 TRANSLATION protein_coding - - - 197.0 12.0 5.33 0.0 161.8 0.0 -4,-7 0.0738 12 9.126 MINOR ENSMUSG00000026878 Rab14 ENSMUST00000230657 ENSMUSP00000155540 TRANSLATION protein_coding start - - 83.0 7.0 2.83 0.0 87.0 0.0 -4,-2 0.0 7 -2.0 MINOR ENSMUSG00000026878 Rab14 ENSMUST00000155359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026878 Rab14 ENSMUST00000137709 - NO_TRANSLATION retained_intron ENSMUSG00000026878 Rab14 ENSMUST00000201694 - NO_TRANSLATION retained_intron ENSMUSG00000026878 Rab14 ENSMUST00000148543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026878 Rab14 ENSMUST00000142015 - NO_TRANSLATION retained_intron ENSMUSG00000026878 Rab14 ENSMUST00000028238 ENSMUSP00000028238 TRANSLATION protein_coding - CCDS15959.1 1 215.0 20.0 5.83 0.0 204.1 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000026878 Rab14 ENSMUST00000126224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026878 Rab14 ENSMUST00000113025 - NO_TRANSLATION retained_intron ENSMUSG00000026878 Rab14 ENSMUST00000201896 - NO_TRANSLATION retained_intron ENSMUSG00000027603 Ggt7 ENSMUST00000029131 ENSMUSP00000029131 TRANSLATION protein_coding - CCDS16949.1 1 662.0 3.0 7.955 9.1 470.7 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000027603 Ggt7 ENSMUST00000147601 ENSMUSP00000120560 TRANSLATION protein_coding stop - 5 202.0 0.0 1.1 0.0 56.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027603 Ggt7 ENSMUST00000138033 - NO_TRANSLATION retained_intron ENSMUSG00000027603 Ggt7 ENSMUST00000176117 ENSMUSP00000135314 TRANSLATION protein_coding stop - 5 270.0 0.0 3.755 0.0 209.5 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000027603 Ggt7 ENSMUST00000148296 - NO_TRANSLATION retained_intron ENSMUSG00000027661 Slc2a10 ENSMUST00000029196 ENSMUSP00000029196 TRANSLATION protein_coding - CCDS17083.1 1 536.0 0.0 1.72 5.3 252.3 0.0 2,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000027661 Slc2a10 ENSMUST00000148463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069495 Epc2 ENSMUST00000092123 ENSMUSP00000089758 TRANSLATION protein_coding - CCDS16023.1 1 808.0 0.0 0.262 22.8 282.7 0.0 -4,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000069495 Epc2 ENSMUST00000152485 ENSMUSP00000119134 TRANSLATION protein_coding start/stop - 3 250.0 0.0 0.2 0.0 0.0 0.0 -4,-2 0.0004 2 -2.0 MINOR ENSMUSG00000074527 Gm14296 ENSMUST00000135176 - NO_TRANSLATION retained_intron ENSMUSG00000074527 Gm14296 ENSMUST00000125090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074527 Gm14296 ENSMUST00000108931 ENSMUSP00000104559 TRANSLATION protein_coding start - - 249.0 2.0 1.2 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000074527 Gm14296 ENSMUST00000099007 ENSMUSP00000096605 TRANSLATION protein_coding - CCDS79875.1 1 134.0 7.0 2.75 0.0 108.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000074527 Gm14296 ENSMUST00000134982 ENSMUSP00000115243 TRANSLATION nonsense_mediated_decay - - 1 100.0 0.0 1.75 0.0 78.5 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000055177 Cstl1 ENSMUST00000109954 ENSMUSP00000105580 TRANSLATION protein_coding - - 1 88.0 0.0 2.05 0.0 30.1 0.0 2,-3 0.0 - 7.194 MINOR ENSMUSG00000055177 Cstl1 ENSMUST00000109955 ENSMUSP00000105581 TRANSLATION protein_coding - CCDS16844.1 1 140.0 0.0 3.05 1.3 56.6 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000055177 Cstl1 ENSMUST00000109952 ENSMUSP00000105578 TRANSLATION protein_coding - CCDS16844.1 5 140.0 0.0 3.05 1.3 56.6 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075205 Or8u10 ENSMUST00000216886 ENSMUSP00000150319 TRANSLATION protein_coding - CCDS16237.1 5 321.0 0.0 1.0 7.5 183.5 4.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075205 Or8u10 ENSMUST00000213333 ENSMUSP00000149232 TRANSLATION protein_coding - CCDS16237.1 5 321.0 0.0 1.0 7.5 183.5 4.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075205 Or8u10 ENSMUST00000216020 ENSMUSP00000150208 TRANSLATION protein_coding - CCDS16237.1 3 321.0 0.0 1.0 7.5 183.5 4.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075205 Or8u10 ENSMUST00000099911 ENSMUSP00000097495 TRANSLATION protein_coding - CCDS16237.1 - 321.0 0.0 1.0 7.5 183.5 4.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079442 St6galnac4 ENSMUST00000179989 ENSMUSP00000136093 TRANSLATION protein_coding - CCDS15921.1 1 302.0 10.0 4.2 12.1 121.3 0.0 1,-4 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000079442 St6galnac4 ENSMUST00000146557 ENSMUSP00000141249 TRANSLATION nonsense_mediated_decay start - 3 47.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000079442 St6galnac4 ENSMUST00000123080 - NO_TRANSLATION retained_intron ENSMUSG00000079442 St6galnac4 ENSMUST00000192934 - NO_TRANSLATION retained_intron ENSMUSG00000079442 St6galnac4 ENSMUST00000102818 ENSMUSP00000099882 TRANSLATION protein_coding - CCDS15921.1 1 302.0 10.0 4.2 12.1 121.3 0.0 1,-4 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000026764 Kif5c ENSMUST00000127245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026764 Kif5c ENSMUST00000132968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026764 Kif5c ENSMUST00000152353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026764 Kif5c ENSMUST00000028102 ENSMUSP00000028102 TRANSLATION protein_coding - CCDS16024.1 1 956.0 11.0 15.13 16.7 372.4 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000026764 Kif5c ENSMUST00000138834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026764 Kif5c ENSMUST00000146247 ENSMUSP00000117370 TRANSLATION protein_coding start/stop - 5 243.0 0.0 3.75 0.0 75.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000026668 Ucma ENSMUST00000115010 ENSMUSP00000110662 TRANSLATION protein_coding - CCDS50489.1 1 138.0 0.0 2.0 11.8 233.8 0.0 3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000026668 Ucma ENSMUST00000127282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026668 Ucma ENSMUST00000027978 ENSMUSP00000027978 TRANSLATION protein_coding - CCDS15661.1 1 116.0 0.0 2.0 2.6 178.5 0.0 1,-3 0.1868 - 9.126 MINOR ENSMUSG00000026668 Ucma ENSMUST00000195688 ENSMUSP00000141304 TRANSLATION protein_coding - CCDS84467.1 1 83.0 0.0 1.0 0.0 50.8 0.0 1,-3 0.0181 - 3.0 MINOR ENSMUSG00000026668 Ucma ENSMUST00000167607 ENSMUSP00000126371 TRANSLATION protein_coding - CCDS50490.1 1 105.0 0.0 1.0 0.7 96.6 0.0 3,-2 0.024 1 3.0 MINOR ENSMUSG00000027470 Mylk2 ENSMUST00000028970 ENSMUSP00000028970 TRANSLATION protein_coding - CCDS38282.2 1 613.0 18.0 8.5 0.1 238.3 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000027475 Kif3b ENSMUST00000028977 ENSMUSP00000028977 TRANSLATION protein_coding - CCDS16911.1 1 747.0 11.0 1.0 24.2 408.3 0.0 -4,-7 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000075214 Or5g25 ENSMUST00000215548 ENSMUSP00000150405 TRANSLATION protein_coding - CCDS16212.1 5 318.0 0.0 1.0 0.4 165.4 6.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075214 Or5g25 ENSMUST00000099920 ENSMUSP00000097504 TRANSLATION protein_coding - CCDS16212.1 - 318.0 0.0 1.0 0.4 165.4 6.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075196 Or8k3 ENSMUST00000216056 ENSMUSP00000150247 TRANSLATION protein_coding - CCDS16246.1 5 319.0 0.0 1.0 3.8 172.2 4.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075196 Or8k3 ENSMUST00000099901 ENSMUSP00000097485 TRANSLATION protein_coding - CCDS16246.1 - 319.0 0.0 1.0 3.8 172.2 4.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026849 Tor1a ENSMUST00000143199 - NO_TRANSLATION retained_intron ENSMUSG00000026849 Tor1a ENSMUST00000123762 - NO_TRANSLATION retained_intron ENSMUSG00000026849 Tor1a ENSMUST00000144152 - NO_TRANSLATION retained_intron ENSMUSG00000026849 Tor1a ENSMUST00000028200 ENSMUSP00000028200 TRANSLATION protein_coding - CCDS15891.1 1 333.0 12.0 4.0 5.8 183.1 0.0 4,-1 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000026849 Tor1a ENSMUST00000137694 - NO_TRANSLATION retained_intron ENSMUSG00000078886 Gm2026 ENSMUST00000174416 ENSMUSP00000134428 TRANSLATION protein_coding - - 3 114.0 3.0 1.75 0.0 76.4 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000078886 Gm2026 ENSMUST00000109007 ENSMUSP00000104635 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000078886 Gm2026 ENSMUST00000109008 ENSMUSP00000104636 TRANSLATION protein_coding - CCDS50826.1 5 498.0 59.0 2.75 0.1 394.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036833 Pnpla7 ENSMUST00000137913 ENSMUSP00000141577 TRANSLATION nonsense_mediated_decay - - 2 222.0 0.0 0.5 0.0 0.0 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036833 Pnpla7 ENSMUST00000153618 ENSMUSP00000117428 TRANSLATION protein_coding stop - 3 120.0 0.0 0.0 0.0 0.0 1.0 -3,-5 0.001 - -2.0 MINOR ENSMUSG00000036833 Pnpla7 ENSMUST00000155601 ENSMUSP00000115952 TRANSLATION nonsense_mediated_decay start - 3 158.0 0.0 0.12375 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036833 Pnpla7 ENSMUST00000141584 - NO_TRANSLATION retained_intron ENSMUSG00000036833 Pnpla7 ENSMUST00000154359 - NO_TRANSLATION retained_intron ENSMUSG00000036833 Pnpla7 ENSMUST00000128517 - NO_TRANSLATION retained_intron ENSMUSG00000036833 Pnpla7 ENSMUST00000139643 - NO_TRANSLATION retained_intron ENSMUSG00000036833 Pnpla7 ENSMUST00000152777 ENSMUSP00000122394 TRANSLATION protein_coding stop - 5 179.0 0.0 0.875 0.0 38.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000036833 Pnpla7 ENSMUST00000146153 ENSMUSP00000117907 TRANSLATION protein_coding start/stop - 5 187.0 0.0 0.198 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000036833 Pnpla7 ENSMUST00000045295 ENSMUSP00000044078 TRANSLATION protein_coding - CCDS50522.1 1 1352.0 12.0 5.33375 1.1 237.7 1.0 -4,-6 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000036833 Pnpla7 ENSMUST00000138536 - NO_TRANSLATION retained_intron ENSMUSG00000036833 Pnpla7 ENSMUST00000132082 - NO_TRANSLATION retained_intron ENSMUSG00000036833 Pnpla7 ENSMUST00000142139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036833 Pnpla7 ENSMUST00000145508 - NO_TRANSLATION retained_intron ENSMUSG00000036833 Pnpla7 ENSMUST00000139031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026904 Slc4a10 ENSMUST00000112480 ENSMUSP00000108099 TRANSLATION protein_coding - CCDS57172.1 1 1118.0 0.0 12.15 1.4 1170.6 11.0 -4,-5 0.497 20 12.134 MINOR ENSMUSG00000026904 Slc4a10 ENSMUST00000054484 ENSMUSP00000061411 TRANSLATION protein_coding - CCDS57173.1 1 1106.0 0.0 12.15 6.7 1170.7 11.0 -4,-5 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000026904 Slc4a10 ENSMUST00000156534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026904 Slc4a10 ENSMUST00000147917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026904 Slc4a10 ENSMUST00000155219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026904 Slc4a10 ENSMUST00000102735 ENSMUSP00000099796 TRANSLATION protein_coding - CCDS16064.1 1 1088.0 0.0 12.15 2.8 1170.7 11.0 -4,-5 0.744 20 12.632 MINOR ENSMUSG00000026904 Slc4a10 ENSMUST00000149527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040035 Disp2 ENSMUST00000063975 ENSMUSP00000070031 TRANSLATION protein_coding - - 1 341.0 0.0 2.182 0.0 0.0 2.0 -4,-5 0.002 1 5.274 MINOR ENSMUSG00000040035 Disp2 ENSMUST00000037547 ENSMUSP00000037136 TRANSLATION protein_coding - CCDS16584.1 1 1345.0 0.0 2.482 2.5 23.1 10.0 -4,-5 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000040035 Disp2 ENSMUST00000110846 ENSMUSP00000106470 TRANSLATION protein_coding - - 1 302.0 0.0 2.182 0.0 0.0 2.0 -4,-5 0.0027 1 5.274 MINOR ENSMUSG00000040035 Disp2 ENSMUST00000142072 - NO_TRANSLATION retained_intron ENSMUSG00000040035 Disp2 ENSMUST00000110843 ENSMUSP00000106467 TRANSLATION protein_coding - - 1 283.0 0.0 2.182 0.0 0.0 2.0 -4,-5 0.0014 1 5.274 MINOR ENSMUSG00000035183 Slc24a5 ENSMUST00000139615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035183 Slc24a5 ENSMUST00000070353 ENSMUSP00000063887 TRANSLATION protein_coding - CCDS38226.1 1 501.0 0.0 1.76 8.7 177.8 0.0 2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035183 Slc24a5 ENSMUST00000149963 - NO_TRANSLATION retained_intron ENSMUSG00000018322 Tomm34 ENSMUST00000018466 ENSMUSP00000018466 TRANSLATION protein_coding - CCDS17020.1 1 309.0 0.0 4.76 13.5 45.2 0.0 -4,-5 1.0 17 12.0 ALTERNATIVE:1 ENSMUSG00000018322 Tomm34 ENSMUST00000132602 - NO_TRANSLATION retained_intron ENSMUSG00000018322 Tomm34 ENSMUST00000109384 ENSMUSP00000105010 TRANSLATION protein_coding - CCDS71187.1 1 309.0 0.0 4.76 13.5 45.2 0.0 -4,-6 0.9975 19 12.0 PRINCIPAL:3 ENSMUSG00000093752 Gm20716 ENSMUST00000138667 ENSMUSP00000139070 TRANSLATION nonsense_mediated_decay,RT - CCDS17109.1 2 260.0 12.0 7.33 9.3 133.6 0.0 -4,0 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000049843 Or5t17 ENSMUST00000214002 ENSMUSP00000149634 TRANSLATION protein_coding - CCDS16275.1 5 324.0 0.0 1.0 2.9 172.0 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000049843 Or5t17 ENSMUST00000055129 ENSMUSP00000052861 TRANSLATION protein_coding - CCDS16275.1 - 324.0 0.0 1.0 2.9 172.0 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000090213 Peds1 ENSMUST00000006587 ENSMUSP00000006587 TRANSLATION protein_coding - CCDS17104.1 1 271.0 0.0 5.6 13.7 258.5 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000090213 Peds1 ENSMUST00000142148 - NO_TRANSLATION retained_intron ENSMUSG00000090213 Peds1 ENSMUST00000125874 - NO_TRANSLATION retained_intron ENSMUSG00000090213 Peds1 ENSMUST00000148262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037254 Itih2 ENSMUST00000042290 ENSMUSP00000046530 TRANSLATION protein_coding - - 1 946.0 5.0 8.58 8.4 418.9 0.0 4,-1 1.0 22 20.0 PRINCIPAL:1 ENSMUSG00000037254 Itih2 ENSMUST00000155809 ENSMUSP00000124636 TRANSLATION protein_coding stop - 1 448.0 5.0 5.98 0.0 161.5 0.0 4,-1 0.001 10 -2.0 MINOR ENSMUSG00000037254 Itih2 ENSMUST00000161909 ENSMUSP00000124880 TRANSLATION protein_coding stop - 3 77.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0013 - -2.0 MINOR ENSMUSG00000009876 Cox4i2 ENSMUST00000010020 ENSMUSP00000010020 TRANSLATION protein_coding - CCDS16898.1 1 172.0 0.0 2.8 11.1 170.8 1.0 -4,0 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000009876 Cox4i2 ENSMUST00000109821 ENSMUSP00000105446 TRANSLATION protein_coding - CCDS16898.1 1 172.0 0.0 2.8 11.1 170.8 1.0 -4,0 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000075125 Or4p20 ENSMUST00000099823 ENSMUSP00000097411 TRANSLATION protein_coding - CCDS16335.1 - 311.0 0.0 1.0 10.7 164.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075125 Or4p20 ENSMUST00000213190 ENSMUSP00000150939 TRANSLATION protein_coding - CCDS16335.1 5 311.0 0.0 1.0 10.7 164.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075125 Or4p20 ENSMUST00000102619 ENSMUSP00000099679 TRANSLATION protein_coding - CCDS16335.1 3 311.0 0.0 1.0 10.7 164.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000000359 Rem1 ENSMUST00000139370 - NO_TRANSLATION retained_intron ENSMUSG00000000359 Rem1 ENSMUST00000000369 ENSMUSP00000000369 TRANSLATION protein_coding - CCDS16895.1 1 297.0 14.0 3.55 12.2 107.2 0.0 -4,-1 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000000359 Rem1 ENSMUST00000150913 ENSMUSP00000119532 TRANSLATION protein_coding stop - 2 69.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000026919 Lcn4 ENSMUST00000028283 ENSMUSP00000028283 TRANSLATION protein_coding - CCDS15810.1 1 185.0 0.0 4.58 0.0 66.3 0.0 1,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000026753 Ppp6c ENSMUST00000028087 ENSMUSP00000028087 TRANSLATION protein_coding - CCDS16017.1 1 305.0 10.0 6.58 34.2 126.0 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000026753 Ppp6c ENSMUST00000204257 ENSMUSP00000145064 TRANSLATION nonsense_mediated_decay - - 5 81.0 3.0 1.9 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026753 Ppp6c ENSMUST00000204701 ENSMUSP00000145157 TRANSLATION protein_coding - - 5 283.0 10.0 5.83 2.1 98.8 0.0 -4,-5 0.032 8 15.0 MINOR ENSMUSG00000026753 Ppp6c ENSMUST00000204368 ENSMUSP00000145393 TRANSLATION protein_coding stop - 5 83.0 5.0 2.08 0.0 51.6 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000026753 Ppp6c ENSMUST00000143733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046020 Pofut1 ENSMUST00000049863 ENSMUSP00000053122 TRANSLATION protein_coding - CCDS16909.1 1 393.0 11.0 9.6 6.9 269.2 0.0 2,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000046020 Pofut1 ENSMUST00000152390 ENSMUSP00000128139 TRANSLATION protein_coding - - 2 298.0 9.0 5.25 0.0 130.5 0.0 -4,-7 0.0009 4 4.668 MINOR ENSMUSG00000046020 Pofut1 ENSMUST00000109794 ENSMUSP00000105417 TRANSLATION protein_coding - - 5 352.0 7.0 8.1 0.0 200.7 0.0 2,-2 0.007 8 8.226 MINOR ENSMUSG00000046020 Pofut1 ENSMUST00000099192 ENSMUSP00000096797 TRANSLATION protein_coding - - 1 353.0 7.0 7.85 0.0 222.6 0.0 2,-2 0.0065 8 9.042 MINOR ENSMUSG00000046020 Pofut1 ENSMUST00000123158 - NO_TRANSLATION retained_intron ENSMUSG00000046020 Pofut1 ENSMUST00000170297 ENSMUSP00000126063 TRANSLATION nonsense_mediated_decay - - 5 83.0 0.0 0.6 0.0 0.0 0.0 2,-2 0.0035 - -2.0 MINOR ENSMUSG00000046020 Pofut1 ENSMUST00000123487 ENSMUSP00000126395 TRANSLATION protein_coding - - 2 297.0 9.0 5.25 0.0 126.9 0.0 -4,-7 0.0 4 4.668 MINOR ENSMUSG00000046020 Pofut1 ENSMUST00000099191 ENSMUSP00000096796 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 0.6 0.0 0.0 0.0 2,-2 0.0035 - -2.0 MINOR ENSMUSG00000016346 Kcnq2 ENSMUST00000016491 ENSMUSP00000016491 TRANSLATION protein_coding - CCDS17193.1 1 759.0 0.0 10.78 0.0 501.8 13.0 -4,-5 0.1809 12 6.0 MINOR ENSMUSG00000016346 Kcnq2 ENSMUST00000139458 - NO_TRANSLATION retained_intron ENSMUSG00000016346 Kcnq2 ENSMUST00000081528 ENSMUSP00000080243 TRANSLATION protein_coding - CCDS17197.1 1 570.0 0.0 10.28 0.0 314.1 13.0 -4,-5 0.0649 9 4.998 MINOR ENSMUSG00000016346 Kcnq2 ENSMUST00000197015 ENSMUSP00000143263 TRANSLATION protein_coding - - 5 842.0 0.0 10.78 8.8 679.5 13.0 -4,-5 0.7894 16 10.754 ALTERNATIVE:1 ENSMUSG00000016346 Kcnq2 ENSMUST00000103048 ENSMUSP00000099337 TRANSLATION protein_coding - CCDS17196.1 1 723.0 0.0 10.78 0.0 494.3 13.0 -4,-5 0.1684 11 6.75 MINOR ENSMUSG00000016346 Kcnq2 ENSMUST00000140789 - NO_TRANSLATION retained_intron ENSMUSG00000016346 Kcnq2 ENSMUST00000103047 ENSMUSP00000099336 TRANSLATION protein_coding - CCDS17195.1 1 747.0 0.0 10.38 0.0 501.8 13.0 -4,-5 0.1283 11 5.202 MINOR ENSMUSG00000016346 Kcnq2 ENSMUST00000154164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016346 Kcnq2 ENSMUST00000152099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016346 Kcnq2 ENSMUST00000103050 ENSMUSP00000099339 TRANSLATION protein_coding - - 5 839.0 0.0 10.38 7.5 675.1 13.0 -4,-5 0.6706 16 9.497 MINOR ENSMUSG00000016346 Kcnq2 ENSMUST00000129073 - NO_TRANSLATION retained_intron ENSMUSG00000016346 Kcnq2 ENSMUST00000129695 ENSMUSP00000123488 TRANSLATION protein_coding start - 1 726.0 0.0 8.88 0.0 674.5 11.0 -4,-7 0.051 12 -2.0 MINOR ENSMUSG00000016346 Kcnq2 ENSMUST00000197599 ENSMUSP00000143490 TRANSLATION protein_coding start/stop - 5 285.0 0.0 5.05 0.0 236.3 8.0 -1,-4 0.0037 4 -2.0 MINOR ENSMUSG00000016346 Kcnq2 ENSMUST00000103049 ENSMUSP00000099338 TRANSLATION protein_coding start - 1 795.0 0.0 10.78 0.0 675.1 13.0 -4,-7 0.1432 13 -2.0 MINOR ENSMUSG00000016346 Kcnq2 ENSMUST00000103051 ENSMUSP00000099340 TRANSLATION protein_coding - - 5 852.0 0.0 10.78 9.5 679.5 13.0 -4,-5 0.8135 17 11.0 PRINCIPAL:3 ENSMUSG00000016346 Kcnq2 ENSMUST00000129361 - NO_TRANSLATION retained_intron ENSMUSG00000016346 Kcnq2 ENSMUST00000144592 - NO_TRANSLATION retained_intron ENSMUSG00000016346 Kcnq2 ENSMUST00000145861 - NO_TRANSLATION retained_intron ENSMUSG00000016346 Kcnq2 ENSMUST00000149964 ENSMUSP00000122915 TRANSLATION protein_coding - CCDS17198.1 1 870.0 0.0 10.78 9.5 679.5 13.0 -4,-5 1.0 16 11.0 ALTERNATIVE:1 ENSMUSG00000016346 Kcnq2 ENSMUST00000123336 - NO_TRANSLATION retained_intron ENSMUSG00000016346 Kcnq2 ENSMUST00000049792 ENSMUSP00000052453 TRANSLATION protein_coding - CCDS17194.1 1 754.0 0.0 9.78 0.0 476.9 13.0 -4,-5 0.0558 11 4.002 MINOR ENSMUSG00000040061 Plcb2 ENSMUST00000102524 ENSMUSP00000099583 TRANSLATION protein_coding - CCDS16582.1 2 1181.0 10.0 22.21 0.0 628.7 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000040061 Plcb2 ENSMUST00000006415 - NO_TRANSLATION retained_intron ENSMUSG00000040061 Plcb2 ENSMUST00000129153 - NO_TRANSLATION retained_intron ENSMUSG00000040061 Plcb2 ENSMUST00000126907 - NO_TRANSLATION retained_intron ENSMUSG00000040061 Plcb2 ENSMUST00000159756 ENSMUSP00000124364 TRANSLATION protein_coding - CCDS71117.1 1 1158.0 10.0 21.46 0.0 628.7 0.0 -4,-6 0.4388 11 16.5 MINOR ENSMUSG00000040061 Plcb2 ENSMUST00000127248 - NO_TRANSLATION retained_intron ENSMUSG00000046845 Il1f10 ENSMUST00000058056 ENSMUSP00000063004 TRANSLATION protein_coding - CCDS15735.1 1 152.0 0.0 3.08 8.0 65.4 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027454 Gins1 ENSMUST00000123217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027454 Gins1 ENSMUST00000140950 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027454 Gins1 ENSMUST00000028948 ENSMUSP00000028948 TRANSLATION protein_coding - CCDS50743.1 1 196.0 0.0 6.0 32.1 0.0 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000027454 Gins1 ENSMUST00000152991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008226 Scrn3 ENSMUST00000112050 ENSMUSP00000107681 TRANSLATION protein_coding - - 1 189.0 0.0 2.8 0.0 0.0 0.0 -4,-5 0.0014 3 0.48 MINOR ENSMUSG00000008226 Scrn3 ENSMUST00000155019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008226 Scrn3 ENSMUST00000154158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008226 Scrn3 ENSMUST00000123621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008226 Scrn3 ENSMUST00000090811 ENSMUSP00000088320 TRANSLATION protein_coding - CCDS16128.1 1 418.0 0.0 5.56 20.5 0.0 0.0 -4,-5 1.0 11 10.0 PRINCIPAL:1 ENSMUSG00000008226 Scrn3 ENSMUST00000139926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027293 Ehd4 ENSMUST00000150240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027293 Ehd4 ENSMUST00000028755 ENSMUSP00000028755 TRANSLATION protein_coding - CCDS16615.1 1 541.0 14.0 5.33 16.1 110.7 0.0 -4,-2 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000027293 Ehd4 ENSMUST00000148073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027293 Ehd4 ENSMUST00000152366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075201 Or5al7 ENSMUST00000099907 ENSMUSP00000097491 TRANSLATION protein_coding - CCDS16241.1 - 314.0 0.0 1.0 6.7 155.3 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075201 Or5al7 ENSMUST00000216028 ENSMUSP00000149716 TRANSLATION protein_coding - CCDS16241.1 5 314.0 0.0 1.0 6.7 155.3 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075201 Or5al7 ENSMUST00000213949 ENSMUSP00000149713 TRANSLATION protein_coding - CCDS16241.1 5 314.0 0.0 1.0 6.7 155.3 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075201 Or5al7 ENSMUST00000213886 ENSMUSP00000150839 TRANSLATION protein_coding - CCDS16241.1 5 314.0 0.0 1.0 6.7 155.3 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061798 Or4c106 ENSMUST00000213283 ENSMUSP00000150111 TRANSLATION protein_coding - CCDS16352.1 5 309.0 0.0 1.0 12.5 164.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061798 Or4c106 ENSMUST00000078631 ENSMUSP00000077701 TRANSLATION protein_coding - CCDS16352.1 - 309.0 0.0 1.0 12.5 164.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026834 Acvr1c ENSMUST00000028178 ENSMUSP00000028178 TRANSLATION protein_coding - CCDS50586.1 1 493.0 20.0 6.4 9.9 201.0 0.0 3,-2 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000026834 Acvr1c ENSMUST00000154453 ENSMUSP00000119776 TRANSLATION protein_coding stop - 5 61.0 0.0 0.0 0.0 23.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026834 Acvr1c ENSMUST00000112607 ENSMUSP00000108226 TRANSLATION protein_coding - - 5 336.0 11.0 5.0 0.7 112.0 0.0 3,-2 0.0104 2 3.858 MINOR ENSMUSG00000026834 Acvr1c ENSMUST00000112608 ENSMUSP00000108227 TRANSLATION protein_coding - - 5 413.0 20.0 6.0 4.2 169.2 0.0 3,-2 0.1539 3 16.374 MINOR ENSMUSG00000026834 Acvr1c ENSMUST00000100085 ENSMUSP00000097663 TRANSLATION protein_coding - CCDS16049.1 1 363.0 20.0 6.0 1.1 161.5 0.0 -4,-5 0.0583 3 14.865 MINOR ENSMUSG00000027446 Cstdc2 ENSMUST00000149457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027446 Cstdc2 ENSMUST00000028937 ENSMUSP00000028937 TRANSLATION protein_coding - CCDS16851.1 1 133.0 0.0 2.55 0.4 36.0 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078889 Gm14288 ENSMUST00000249356 ENSMUSP00000159723 TRANSLATION protein_coding - - - 191.0 20.0 1.3 0.0 87.4 0.0 -4,-5 0.701 - 15.546 PRINCIPAL:1 ENSMUSG00000078889 Gm14288 ENSMUST00000109020 ENSMUSP00000104648 TRANSLATION protein_coding - CCDS50822.1 1 64.0 0.0 1.75 0.4 72.2 0.0 -4,-5 0.0263 - 9.726 MINOR ENSMUSG00000078889 Gm14288 ENSMUST00000249355 ENSMUSP00000159713 TRANSLATION protein_coding - - - 69.0 0.0 1.75 0.0 72.2 0.0 -4,-5 0.0005 - 9.726 MINOR ENSMUSG00000078889 Gm14288 ENSMUST00000123863 ENSMUSP00000121303 TRANSLATION protein_coding - - 2 88.0 0.0 2.2 0.0 72.2 0.0 -4,-5 0.0397 - 10.956 MINOR ENSMUSG00000006469 Slc34a3 ENSMUST00000155420 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006469 Slc34a3 ENSMUST00000142095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006469 Slc34a3 ENSMUST00000144884 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006469 Slc34a3 ENSMUST00000137482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006469 Slc34a3 ENSMUST00000124146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006469 Slc34a3 ENSMUST00000006638 ENSMUSP00000006638 TRANSLATION protein_coding - CCDS15754.1 1 601.0 0.0 0.0 6.1 133.6 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000006469 Slc34a3 ENSMUST00000152997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026939 Tmem141 ENSMUST00000132348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026939 Tmem141 ENSMUST00000028308 ENSMUSP00000028308 TRANSLATION protein_coding start - 3 106.0 0.0 3.0 6.5 128.2 1.0 -4,-7 0.6702 2 -2.0 MINOR ENSMUSG00000026939 Tmem141 ENSMUST00000155893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026939 Tmem141 ENSMUST00000128149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026939 Tmem141 ENSMUST00000136952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026939 Tmem141 ENSMUST00000142087 ENSMUSP00000121862 TRANSLATION protein_coding - CCDS50534.1 1 108.0 0.0 3.0 6.5 140.8 2.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000026939 Tmem141 ENSMUST00000150165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026740 Dnajc1 ENSMUST00000153055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026740 Dnajc1 ENSMUST00000164606 - NO_TRANSLATION retained_intron ENSMUSG00000026740 Dnajc1 ENSMUST00000165793 - NO_TRANSLATION retained_intron ENSMUSG00000026740 Dnajc1 ENSMUST00000163130 ENSMUSP00000129176 TRANSLATION nonsense_mediated_decay start - 5 79.0 0.0 1.2 0.0 59.1 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000026740 Dnajc1 ENSMUST00000148401 ENSMUSP00000132289 TRANSLATION protein_coding start - 3 58.0 0.0 1.75 0.0 32.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026740 Dnajc1 ENSMUST00000164835 ENSMUSP00000128687 TRANSLATION nonsense_mediated_decay start - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000026740 Dnajc1 ENSMUST00000166495 ENSMUSP00000126321 TRANSLATION protein_coding - CCDS15709.1 1 552.0 0.0 5.27 0.3 113.9 1.0 1,2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000026740 Dnajc1 ENSMUST00000172210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026740 Dnajc1 ENSMUST00000168723 ENSMUSP00000126716 TRANSLATION protein_coding start - 5 357.0 0.0 3.45 0.0 35.2 0.0 4,-1 0.0009 6 -2.0 MINOR ENSMUSG00000026740 Dnajc1 ENSMUST00000028072 ENSMUSP00000028072 TRANSLATION nonsense_mediated_decay - - 5 105.0 0.0 1.2 0.0 59.1 0.0 1,2 0.0 1 -2.0 MINOR ENSMUSG00000026740 Dnajc1 ENSMUST00000091418 ENSMUSP00000088980 TRANSLATION protein_coding - CCDS15709.1 1 552.0 0.0 5.27 0.3 113.9 1.0 1,2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000111239 Or4a75 ENSMUST00000216129 ENSMUSP00000150117 TRANSLATION protein_coding - CCDS16387.1 - 307.0 0.0 1.0 4.6 165.4 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042854 Trp53rkb ENSMUST00000065753 ENSMUSP00000066907 TRANSLATION protein_coding - - 1 144.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - 3.0 MINOR ENSMUSG00000042854 Trp53rkb ENSMUST00000051923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042854 Trp53rkb ENSMUST00000151826 ENSMUSP00000115353 TRANSLATION protein_coding - CCDS17090.1 1 244.0 2.0 2.0 0.7 32.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000078906 Gm14444 ENSMUST00000109069 ENSMUSP00000104697 TRANSLATION protein_coding - - 2 64.0 0.0 1.75 0.4 75.1 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078906 Gm14444 ENSMUST00000249360 ENSMUSP00000159718 TRANSLATION protein_coding - - - 64.0 0.0 1.75 0.4 75.1 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078906 Gm14444 ENSMUST00000109070 ENSMUSP00000104698 TRANSLATION protein_coding - - 3 426.0 43.0 2.3 0.0 294.6 0.0 -4,-5 0.7974 - 18.0 PRINCIPAL:1 ENSMUSG00000027480 Sun5 ENSMUST00000124414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027480 Sun5 ENSMUST00000129011 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027480 Sun5 ENSMUST00000028982 ENSMUSP00000028982 TRANSLATION protein_coding - CCDS38288.1 1 348.0 0.0 3.125 0.0 134.3 0.0 -4,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000045319 Proser2 ENSMUST00000126551 ENSMUSP00000115240 TRANSLATION protein_coding stop - 5 187.0 0.0 0.0 0.0 27.1 0.0 -4,-5 0.0005 3 -2.0 MINOR ENSMUSG00000045319 Proser2 ENSMUST00000194054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045319 Proser2 ENSMUST00000054254 ENSMUSP00000060780 TRANSLATION protein_coding - CCDS15671.1 1 471.0 0.0 0.0 1.1 62.5 0.0 -4,-5 1.0 9 7.0 PRINCIPAL:1 ENSMUSG00000045319 Proser2 ENSMUST00000114942 ENSMUSP00000110592 TRANSLATION protein_coding - CCDS15671.1 1 471.0 0.0 0.0 1.1 62.5 0.0 -4,-5 1.0 9 7.0 PRINCIPAL:1 ENSMUSG00000026963 Tmem210 ENSMUST00000144102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026963 Tmem210 ENSMUST00000028340 ENSMUSP00000028340 TRANSLATION protein_coding - CCDS50527.1 1 147.0 0.0 0.8 0.0 207.9 0.0 -3,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000047459 Dynlrb1 ENSMUST00000109682 ENSMUSP00000105304 TRANSLATION protein_coding - CCDS38294.1 1 96.0 0.0 2.25 36.9 92.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000047459 Dynlrb1 ENSMUST00000135831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047459 Dynlrb1 ENSMUST00000054912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047459 Dynlrb1 ENSMUST00000150602 ENSMUSP00000114928 TRANSLATION protein_coding - CCDS71166.1 2 104.0 0.0 2.25 0.0 92.1 0.0 -4,-5 0.1369 4 12.0 MINOR ENSMUSG00000074899 Sptbn5 ENSMUST00000156159 ENSMUSP00000158705 TRANSLATION protein_coding - - 5 3624.0 0.0 15.743 0.0 1029.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027131 Emc4 ENSMUST00000153967 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027131 Emc4 ENSMUST00000028551 ENSMUSP00000028551 TRANSLATION protein_coding - CCDS16553.1 1 183.0 0.0 2.83 18.8 155.6 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000026887 Mrrf ENSMUST00000132042 ENSMUSP00000123918 TRANSLATION nonsense_mediated_decay - - 3 83.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000026887 Mrrf ENSMUST00000200701 - NO_TRANSLATION retained_intron ENSMUSG00000026887 Mrrf ENSMUST00000028250 ENSMUSP00000028250 TRANSLATION protein_coding - CCDS38114.1 1 262.0 0.0 4.75 9.3 143.7 0.0 -4,0 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000026887 Mrrf ENSMUST00000162490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027357 Crls1 ENSMUST00000154160 ENSMUSP00000129137 TRANSLATION protein_coding stop - 5 191.0 0.0 0.0 0.0 46.8 9.0 -4,-7 0.0502 1 -2.0 MINOR ENSMUSG00000027357 Crls1 ENSMUST00000124836 ENSMUSP00000132682 TRANSLATION protein_coding - CCDS38247.1 1 188.0 0.0 0.0 11.2 36.9 7.0 -4,-6 0.9712 1 3.0 ALTERNATIVE:1 ENSMUSG00000027357 Crls1 ENSMUST00000110122 ENSMUSP00000105749 TRANSLATION protein_coding stop - 5 187.0 0.0 0.0 0.0 0.0 2.0 0,4 0.0072 2 -2.0 MINOR ENSMUSG00000027357 Crls1 ENSMUST00000028835 ENSMUSP00000028835 TRANSLATION protein_coding - CCDS16779.1 1 303.0 0.0 0.0 6.4 46.8 9.0 0,4 1.0 2 3.587 PRINCIPAL:3 ENSMUSG00000027357 Crls1 ENSMUST00000124834 ENSMUSP00000129509 TRANSLATION nonsense_mediated_decay - - 1 154.0 0.0 0.0 1.0 0.0 2.0 0,4 0.0215 1 -2.0 MINOR ENSMUSG00000045503 Sys1 ENSMUST00000125086 ENSMUSP00000121900 TRANSLATION nonsense_mediated_decay - CCDS50793.1 1 156.0 0.0 2.75 36.2 181.1 5.0 -3,-5 1.0 - -2.0 MINOR ENSMUSG00000045503 Sys1 ENSMUST00000155250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045503 Sys1 ENSMUST00000142347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045503 Sys1 ENSMUST00000142892 ENSMUSP00000114360 TRANSLATION nonsense_mediated_decay - - 2 76.0 0.0 1.75 8.1 65.3 2.0 -3,-5 0.1199 - -2.0 MINOR ENSMUSG00000045503 Sys1 ENSMUST00000109352 ENSMUSP00000104976 TRANSLATION protein_coding - CCDS50793.1 5 156.0 0.0 2.75 36.2 181.1 5.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000045503 Sys1 ENSMUST00000138268 ENSMUSP00000117507 TRANSLATION nonsense_mediated_decay - - 1 76.0 0.0 1.75 8.1 65.3 2.0 -3,-5 0.1199 - -2.0 MINOR ENSMUSG00000045503 Sys1 ENSMUST00000072452 ENSMUSP00000072275 TRANSLATION protein_coding - CCDS50793.1 1 156.0 0.0 2.75 36.2 181.1 5.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074647 Fam83c ENSMUST00000029143 ENSMUSP00000029143 TRANSLATION protein_coding - - 1 730.0 0.0 1.8 3.1 347.6 0.0 -4,-2 1.0 5 9.0 PRINCIPAL:2 ENSMUSG00000074647 Fam83c ENSMUST00000239423 ENSMUSP00000159338 TRANSLATION protein_coding - CCDS50770.1 - 776.0 0.0 1.8 0.1 347.6 0.0 -3,-6 0.4958 5 8.0 ALTERNATIVE:2 ENSMUSG00000075091 Or4c125 ENSMUST00000215018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075091 Or4c125 ENSMUST00000215469 ENSMUSP00000149322 TRANSLATION protein_coding - CCDS16376.1 5 305.0 0.0 1.0 4.6 158.0 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075091 Or4c125 ENSMUST00000099784 ENSMUSP00000097372 TRANSLATION protein_coding - CCDS16376.1 - 305.0 0.0 1.0 4.6 158.0 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075091 Or4c125 ENSMUST00000216561 ENSMUSP00000149446 TRANSLATION protein_coding - CCDS16376.1 5 305.0 0.0 1.0 4.6 158.0 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075256 Cerkl ENSMUST00000145766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075256 Cerkl ENSMUST00000152549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075256 Cerkl ENSMUST00000156731 ENSMUSP00000121353 TRANSLATION protein_coding start - 3 107.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000075256 Cerkl ENSMUST00000143602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075256 Cerkl ENSMUST00000099974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075256 Cerkl ENSMUST00000156830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075256 Cerkl ENSMUST00000152413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075256 Cerkl ENSMUST00000147402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075256 Cerkl ENSMUST00000123859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075256 Cerkl ENSMUST00000153602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075256 Cerkl ENSMUST00000143974 ENSMUSP00000114325 TRANSLATION protein_coding - CCDS38157.1 1 525.0 10.0 2.965 0.3 87.3 0.0 -4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000075256 Cerkl ENSMUST00000130499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059005 Hnrnpa3 ENSMUST00000111962 ENSMUSP00000107593 TRANSLATION protein_coding - CCDS50610.1 1 357.0 0.0 4.8 2.2 180.6 0.0 -4,-5 1.0 19 9.0 PRINCIPAL:2 ENSMUSG00000059005 Hnrnpa3 ENSMUST00000164947 ENSMUSP00000126069 TRANSLATION protein_coding - CCDS50610.1 5 357.0 0.0 4.8 2.2 180.6 0.0 -4,-5 1.0 19 9.0 PRINCIPAL:2 ENSMUSG00000059005 Hnrnpa3 ENSMUST00000111964 ENSMUSP00000107595 TRANSLATION protein_coding - CCDS16149.1 1 379.0 0.0 4.8 1.9 180.2 0.0 -4,-5 0.6932 20 8.416 ALTERNATIVE:2 ENSMUSG00000059005 Hnrnpa3 ENSMUST00000132392 - NO_TRANSLATION retained_intron ENSMUSG00000059005 Hnrnpa3 ENSMUST00000090792 ENSMUSP00000088298 TRANSLATION protein_coding - CCDS16149.1 5 379.0 0.0 4.8 1.9 180.2 0.0 -4,-5 0.6932 20 8.416 ALTERNATIVE:2 ENSMUSG00000059005 Hnrnpa3 ENSMUST00000111961 ENSMUSP00000107592 TRANSLATION protein_coding - - 1 318.0 0.0 4.8 0.0 180.6 0.0 -4,-5 0.0232 20 8.0 ALTERNATIVE:2 ENSMUSG00000059005 Hnrnpa3 ENSMUST00000141974 ENSMUSP00000116125 TRANSLATION protein_coding start - 2 194.0 0.0 1.8 0.0 62.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026726 Cubn ENSMUST00000148506 - NO_TRANSLATION retained_intron ENSMUSG00000026726 Cubn ENSMUST00000195447 - NO_TRANSLATION retained_intron ENSMUSG00000026726 Cubn ENSMUST00000091436 ENSMUSP00000089009 TRANSLATION protein_coding - CCDS38048.1 5 3623.0 62.0 26.992 0.0 2381.9 0.0 4,-1 1.0 54 18.0 PRINCIPAL:1 ENSMUSG00000034101 Ctnnd1 ENSMUST00000111695 ENSMUSP00000107324 TRANSLATION protein_coding - - 5 961.0 0.0 7.2 10.7 104.8 0.0 -4,-5 0.8084 40 10.529 ALTERNATIVE:1 ENSMUSG00000034101 Ctnnd1 ENSMUST00000150940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034101 Ctnnd1 ENSMUST00000099941 ENSMUSP00000097524 TRANSLATION protein_coding - - 5 837.0 0.0 7.035 3.1 104.8 0.0 -4,-5 0.2327 37 8.219 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111697 ENSMUSP00000107326 TRANSLATION protein_coding - CCDS50623.1 5 917.0 0.0 7.035 4.3 104.8 0.0 -4,-5 0.5616 39 8.531 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111686 ENSMUSP00000107315 TRANSLATION protein_coding - - 5 878.0 0.0 7.2 1.0 104.8 0.0 -4,-7 0.2487 39 8.0 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111684 ENSMUSP00000107313 TRANSLATION protein_coding - - 5 913.0 0.0 7.035 1.0 104.8 0.0 -4,-7 0.2554 38 7.67 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000141151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034101 Ctnnd1 ENSMUST00000111698 ENSMUSP00000107327 TRANSLATION protein_coding - - 5 868.0 0.0 7.2 0.0 104.8 0.0 -4,-5 0.0702 39 8.0 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111676 ENSMUSP00000107305 TRANSLATION protein_coding - - 5 860.0 0.0 7.2 7.8 104.8 0.0 -4,-5 0.6842 36 9.773 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000131926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034101 Ctnnd1 ENSMUST00000111692 ENSMUSP00000107321 TRANSLATION protein_coding - - 5 932.0 0.0 7.2 12.2 104.8 0.0 -4,-5 0.862 41 10.922 ALTERNATIVE:1 ENSMUSG00000034101 Ctnnd1 ENSMUST00000111670 ENSMUSP00000107299 TRANSLATION protein_coding - CCDS50621.1 1 830.0 0.0 7.2 3.1 104.8 0.0 -4,-5 0.4514 36 8.549 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000145312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034101 Ctnnd1 ENSMUST00000126092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034101 Ctnnd1 ENSMUST00000067232 ENSMUSP00000064518 TRANSLATION protein_coding - CCDS16186.1 1 938.0 0.0 7.035 12.5 104.8 0.0 -4,-5 1.0 41 10.67 PRINCIPAL:4 ENSMUSG00000034101 Ctnnd1 ENSMUST00000111678 ENSMUSP00000107307 TRANSLATION protein_coding - - 5 866.0 0.0 7.035 8.1 104.8 0.0 -4,-5 0.7147 36 9.521 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111677 ENSMUSP00000107306 TRANSLATION protein_coding - - 5 839.0 0.0 7.2 2.0 104.8 0.0 -4,-5 0.2642 34 8.261 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111691 ENSMUSP00000107320 TRANSLATION protein_coding - CCDS16186.1 1 938.0 0.0 7.035 12.5 104.8 0.0 -4,-5 1.0 41 10.67 PRINCIPAL:4 ENSMUSG00000034101 Ctnnd1 ENSMUST00000111693 ENSMUSP00000107322 TRANSLATION protein_coding - - 5 932.0 0.0 7.2 12.2 104.8 0.0 -4,-5 0.862 41 10.922 ALTERNATIVE:1 ENSMUSG00000034101 Ctnnd1 ENSMUST00000149317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034101 Ctnnd1 ENSMUST00000111675 ENSMUSP00000107304 TRANSLATION protein_coding - - 5 609.0 0.0 7.2 0.0 104.8 0.0 -4,-5 0.0319 26 8.0 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111690 ENSMUSP00000107319 TRANSLATION protein_coding - - 5 878.0 0.0 7.2 1.0 104.8 0.0 -4,-7 0.2487 39 8.0 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111685 ENSMUSP00000107314 TRANSLATION protein_coding - - 5 892.0 0.0 7.035 1.0 104.8 0.0 -4,-7 0.2044 36 7.67 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111694 ENSMUSP00000107323 TRANSLATION protein_coding - - 5 967.0 0.0 7.035 10.7 104.8 0.0 -4,-5 0.8048 40 10.199 ALTERNATIVE:1 ENSMUSG00000034101 Ctnnd1 ENSMUST00000036811 ENSMUSP00000042543 TRANSLATION protein_coding - CCDS50623.1 1 917.0 0.0 7.035 4.3 104.8 0.0 -4,-5 0.5616 39 8.531 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111688 ENSMUSP00000107317 TRANSLATION protein_coding - - 5 878.0 0.0 7.2 1.0 104.8 0.0 -4,-7 0.2487 39 8.0 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111689 ENSMUSP00000107318 TRANSLATION protein_coding - - 5 884.0 0.0 7.035 1.0 104.8 0.0 -4,-7 0.2023 39 7.67 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000066177 ENSMUSP00000065252 TRANSLATION protein_coding - CCDS50622.1 1 911.0 0.0 7.2 4.0 104.8 0.0 -4,-5 0.5871 39 8.783 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111687 ENSMUSP00000107316 TRANSLATION protein_coding - - 5 907.0 0.0 7.2 1.0 104.8 0.0 -4,-7 0.2915 38 8.0 MINOR ENSMUSG00000034101 Ctnnd1 ENSMUST00000111696 ENSMUSP00000107325 TRANSLATION protein_coding - - 5 940.0 0.0 7.2 3.5 104.8 0.0 -4,-5 0.4114 38 8.651 MINOR ENSMUSG00000059013 Sh2d3c ENSMUST00000139563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059013 Sh2d3c ENSMUST00000131101 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059013 Sh2d3c ENSMUST00000124133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059013 Sh2d3c ENSMUST00000074248 ENSMUSP00000073866 TRANSLATION protein_coding - CCDS15928.1 1 854.0 0.0 6.0 3.4 96.1 0.0 -4,-2 0.4305 9 12.504 MINOR ENSMUSG00000059013 Sh2d3c ENSMUST00000141670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059013 Sh2d3c ENSMUST00000113242 ENSMUSP00000108868 TRANSLATION protein_coding - CCDS57168.1 1 702.0 0.0 6.2 8.7 96.6 0.0 -4,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000074643 Cpne1 ENSMUST00000136296 ENSMUSP00000122994 TRANSLATION protein_coding,RT stop - 5 378.0 10.0 10.08 0.0 222.1 0.0 -4,-7 0.0006 - -2.0 ALTERNATIVE:2 ENSMUSG00000074643 Cpne1 ENSMUST00000147956 - NO_TRANSLATION retained_intron ENSMUSG00000074643 Cpne1 ENSMUST00000109608 ENSMUSP00000105237 TRANSLATION protein_coding,RT - CCDS16960.1 1 536.0 11.0 14.4 15.4 379.7 0.0 -4,-7 1.0 - -2.0 ALTERNATIVE:1 ENSMUSG00000074643 Cpne1 ENSMUST00000133921 ENSMUSP00000122644 TRANSLATION protein_coding,RT stop - 5 178.0 7.0 4.33 0.0 44.4 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000074643 Cpne1 ENSMUST00000184933 - NO_TRANSLATION retained_intron ENSMUSG00000074643 Cpne1 ENSMUST00000153634 ENSMUSP00000115167 TRANSLATION protein_coding,RT stop - 5 325.0 10.0 8.25 0.0 138.2 0.0 -4,-7 0.0006 - -2.0 ALTERNATIVE:2 ENSMUSG00000074643 Cpne1 ENSMUST00000184265 ENSMUSP00000138888 TRANSLATION protein_coding,RT - - 5 161.0 4.0 3.08 0.0 44.4 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000074643 Cpne1 ENSMUST00000140109 ENSMUSP00000121998 TRANSLATION protein_coding start - 5 211.0 0.0 3.82 0.0 171.0 0.0 -4,-6 0.0275 3 -2.0 PRINCIPAL:3 ENSMUSG00000074643 Cpne1 ENSMUST00000109607 ENSMUSP00000105236 TRANSLATION protein_coding,RT - CCDS16960.1 1 536.0 11.0 14.4 15.4 379.7 0.0 -4,-7 1.0 - -2.0 ALTERNATIVE:1 ENSMUSG00000074643 Cpne1 ENSMUST00000142975 - NO_TRANSLATION retained_intron ENSMUSG00000074643 Cpne1 ENSMUST00000183353 - NO_TRANSLATION retained_intron ENSMUSG00000074643 Cpne1 ENSMUST00000183733 ENSMUSP00000139230 TRANSLATION nonsense_mediated_decay start - 3 197.0 0.0 5.16 0.0 147.7 0.0 -4,-5 0.0 2 -2.0 ALTERNATIVE:2 ENSMUSG00000074643 Cpne1 ENSMUST00000154889 ENSMUSP00000118140 TRANSLATION protein_coding,RT stop - 5 127.0 4.0 2.75 0.0 44.4 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000074643 Cpne1 ENSMUST00000079312 ENSMUSP00000078292 TRANSLATION protein_coding,RT - - 5 480.0 11.0 13.07 1.0 270.9 0.0 -4,-7 0.0156 - -2.0 ALTERNATIVE:2 ENSMUSG00000074643 Cpne1 ENSMUST00000126513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074643 Cpne1 ENSMUST00000147627 ENSMUSP00000116982 TRANSLATION nonsense_mediated_decay,RT - - 5 350.0 11.0 9.08 0.0 149.7 0.0 -4,-7 0.0012 - -2.0 ALTERNATIVE:2 ENSMUSG00000074643 Cpne1 ENSMUST00000184152 ENSMUSP00000139035 TRANSLATION protein_coding stop - 3 123.0 4.0 2.75 0.0 44.6 0.0 -4,-7 0.0 2 -2.0 ALTERNATIVE:2 ENSMUSG00000074643 Cpne1 ENSMUST00000142960 ENSMUSP00000121299 TRANSLATION protein_coding,RT stop - 5 230.0 11.0 6.08 0.0 90.0 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000017897 Eya2 ENSMUST00000128280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017897 Eya2 ENSMUST00000128696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017897 Eya2 ENSMUST00000088132 ENSMUSP00000085455 TRANSLATION protein_coding - CCDS17084.1 1 532.0 4.0 6.0 2.4 29.6 0.0 -4,-5 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000017897 Eya2 ENSMUST00000150669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017897 Eya2 ENSMUST00000150638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017897 Eya2 ENSMUST00000063433 ENSMUSP00000066244 TRANSLATION protein_coding - CCDS17084.1 1 532.0 4.0 6.0 2.4 29.6 0.0 -4,-5 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000039145 Camk1d ENSMUST00000130470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039145 Camk1d ENSMUST00000114987 ENSMUSP00000110638 TRANSLATION protein_coding - CCDS70975.1 1 377.0 19.0 7.7485 0.0 260.8 0.0 -4,-7 0.0766 11 15.732 MINOR ENSMUSG00000039145 Camk1d ENSMUST00000155927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039145 Camk1d ENSMUST00000044009 ENSMUSP00000037028 TRANSLATION protein_coding - CCDS15665.1 1 385.0 18.0 8.6 14.6 270.2 0.0 -4,-5 1.0 11 21.334 PRINCIPAL:1 ENSMUSG00000000889 Dbh ENSMUST00000155290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000889 Dbh ENSMUST00000000910 ENSMUSP00000000910 TRANSLATION protein_coding - CCDS38088.1 1 622.0 5.0 10.65 0.1 473.6 0.0 -4,-7 1.0 7 17.0 PRINCIPAL:1 ENSMUSG00000003662 Ciao1 ENSMUST00000003759 ENSMUSP00000003759 TRANSLATION protein_coding - CCDS16696.1 1 339.0 0.0 6.83 26.9 178.4 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000003662 Ciao1 ENSMUST00000174030 ENSMUSP00000134189 TRANSLATION protein_coding - - 5 233.0 0.0 4.75 0.1 156.0 0.0 -4,-6 0.0204 5 6.498 MINOR ENSMUSG00000003662 Ciao1 ENSMUST00000172636 ENSMUSP00000134199 TRANSLATION nonsense_mediated_decay - - 5 51.0 0.0 1.0 0.0 29.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000003662 Ciao1 ENSMUST00000174863 ENSMUSP00000134159 TRANSLATION protein_coding - - 5 176.0 0.0 3.882 0.1 87.4 0.0 -4,-6 0.0 5 0.642 MINOR ENSMUSG00000003662 Ciao1 ENSMUST00000143575 - NO_TRANSLATION retained_intron ENSMUSG00000075063 Or4b13 ENSMUST00000099752 ENSMUSP00000097341 TRANSLATION protein_coding - CCDS16410.1 - 305.0 0.0 1.0 13.4 176.2 4.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075063 Or4b13 ENSMUST00000213968 ENSMUSP00000150216 TRANSLATION protein_coding - CCDS16410.1 5 305.0 0.0 1.0 13.4 176.2 4.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027324 Rpusd2 ENSMUST00000028796 ENSMUSP00000028796 TRANSLATION protein_coding - CCDS16588.1 1 553.0 2.0 0.66 0.4 109.8 0.0 -4,-7 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000060802 B2m ENSMUST00000102476 ENSMUSP00000099534 TRANSLATION protein_coding - CCDS16654.1 1 119.0 0.0 1.375 3.2 84.9 0.0 4,-1 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000000876 Pxmp4 ENSMUST00000109703 ENSMUSP00000105325 TRANSLATION protein_coding - - 1 92.0 0.0 2.15 0.0 0.0 0.0 -4,0 0.0 - 2.802 MINOR ENSMUSG00000000876 Pxmp4 ENSMUST00000000896 ENSMUSP00000000896 TRANSLATION protein_coding - CCDS16936.1 1 212.0 0.0 3.75 12.4 43.9 0.0 -4,0 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000041219 Arhgap11a ENSMUST00000102545 ENSMUSP00000099604 TRANSLATION protein_coding - CCDS16562.1 5 987.0 0.0 3.89 0.0 113.9 0.0 -3,-2 0.5432 6 8.0 ALTERNATIVE:2 ENSMUSG00000041219 Arhgap11a ENSMUST00000110947 ENSMUSP00000106572 TRANSLATION protein_coding - - 1 498.0 0.0 3.89 2.1 113.9 0.0 -3,-2 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000041219 Arhgap11a ENSMUST00000110948 ENSMUSP00000106573 TRANSLATION protein_coding - - 1 457.0 0.0 3.89 0.0 113.9 0.0 -3,-2 0.08 4 8.0 ALTERNATIVE:2 ENSMUSG00000026918 Brd3 ENSMUST00000147736 ENSMUSP00000122009 TRANSLATION protein_coding stop - 3 90.0 0.0 1.75 0.0 38.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000026918 Brd3 ENSMUST00000113941 ENSMUSP00000109574 TRANSLATION protein_coding - CCDS50546.1 5 743.0 0.0 5.5 0.3 243.0 0.0 -4,-5 0.4758 8 8.0 ALTERNATIVE:2 ENSMUSG00000026918 Brd3 ENSMUST00000130932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026918 Brd3 ENSMUST00000144758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026918 Brd3 ENSMUST00000126059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026918 Brd3 ENSMUST00000028282 ENSMUSP00000028282 TRANSLATION protein_coding - CCDS15828.1 5 726.0 0.0 5.5 0.3 243.0 0.0 -4,-5 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000026918 Brd3 ENSMUST00000138693 ENSMUSP00000115755 TRANSLATION protein_coding stop - 5 682.0 0.0 5.5 0.0 243.0 0.0 -4,-5 0.0661 7 -2.0 MINOR ENSMUSG00000026918 Brd3 ENSMUST00000154316 ENSMUSP00000114422 TRANSLATION protein_coding stop - 5 682.0 0.0 5.5 0.0 243.0 0.0 -4,-5 0.0661 7 -2.0 MINOR ENSMUSG00000026918 Brd3 ENSMUST00000164296 ENSMUSP00000128812 TRANSLATION protein_coding - CCDS15828.1 5 726.0 0.0 5.5 0.3 243.0 0.0 -4,-5 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000026918 Brd3 ENSMUST00000077737 ENSMUSP00000076918 TRANSLATION protein_coding - CCDS15828.1 1 726.0 0.0 5.5 0.3 243.0 0.0 -4,-5 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000060257 Scrt2 ENSMUST00000064061 ENSMUSP00000066280 TRANSLATION protein_coding - CCDS50750.1 5 311.0 19.0 0.5 0.1 75.1 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000046971 Pla2g4f ENSMUST00000054651 ENSMUSP00000062607 TRANSLATION protein_coding - CCDS16618.1 1 855.0 8.0 9.2275 0.1 160.8 0.0 -4,-7 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000046971 Pla2g4f ENSMUST00000142183 - NO_TRANSLATION retained_intron ENSMUSG00000005882 Uqcc1 ENSMUST00000155680 - NO_TRANSLATION retained_intron ENSMUSG00000005882 Uqcc1 ENSMUST00000161484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005882 Uqcc1 ENSMUST00000162749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005882 Uqcc1 ENSMUST00000136933 ENSMUSP00000116390 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000005882 Uqcc1 ENSMUST00000152818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005882 Uqcc1 ENSMUST00000139232 ENSMUSP00000123019 TRANSLATION protein_coding start/stop - 5 243.0 0.0 5.362 0.0 143.3 0.0 -4,-1 0.0104 5 -2.0 MINOR ENSMUSG00000005882 Uqcc1 ENSMUST00000006036 ENSMUSP00000006036 TRANSLATION protein_coding - - 5 215.0 0.0 3.282 0.0 67.0 0.0 -4,-1 0.0002 3 2.262 MINOR ENSMUSG00000005882 Uqcc1 ENSMUST00000151078 ENSMUSP00000123111 TRANSLATION nonsense_mediated_decay - - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000005882 Uqcc1 ENSMUST00000142655 ENSMUSP00000118094 TRANSLATION protein_coding stop - 5 33.0 0.0 0.882 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000005882 Uqcc1 ENSMUST00000152766 ENSMUSP00000122886 TRANSLATION protein_coding start - 5 262.0 0.0 5.112 0.0 143.3 0.0 -4,-1 0.0138 4 -2.0 MINOR ENSMUSG00000005882 Uqcc1 ENSMUST00000109632 ENSMUSP00000105260 TRANSLATION protein_coding - - 5 269.0 0.0 5.112 5.9 100.4 0.0 -4,-1 0.1488 5 9.326 MINOR ENSMUSG00000005882 Uqcc1 ENSMUST00000146995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005882 Uqcc1 ENSMUST00000123790 - NO_TRANSLATION retained_intron ENSMUSG00000005882 Uqcc1 ENSMUST00000133726 ENSMUSP00000121610 TRANSLATION nonsense_mediated_decay - - 5 120.0 0.0 0.282 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000005882 Uqcc1 ENSMUST00000159238 ENSMUSP00000125200 TRANSLATION protein_coding stop - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005882 Uqcc1 ENSMUST00000109631 ENSMUSP00000105259 TRANSLATION protein_coding - - 5 227.0 0.0 5.58 2.0 143.3 0.0 -4,0 0.1752 5 11.72 MINOR ENSMUSG00000005882 Uqcc1 ENSMUST00000109636 ENSMUSP00000105264 TRANSLATION protein_coding - CCDS16957.2 1 295.0 0.0 5.862 15.0 143.3 0.0 -4,-1 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000005882 Uqcc1 ENSMUST00000162258 - NO_TRANSLATION retained_intron ENSMUSG00000005882 Uqcc1 ENSMUST00000141501 - NO_TRANSLATION retained_intron ENSMUSG00000027596 a ENSMUST00000109697 ENSMUSP00000105319 TRANSLATION protein_coding - CCDS16941.1 5 131.0 0.0 1.0 10.3 99.8 0.0 2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027596 a ENSMUST00000029123 ENSMUSP00000029123 TRANSLATION protein_coding - CCDS16941.1 1 131.0 0.0 1.0 10.3 99.8 0.0 2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027596 a ENSMUST00000132342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027596 a ENSMUST00000137333 ENSMUSP00000122261 TRANSLATION protein_coding stop - 1 70.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0039 - -2.0 MINOR ENSMUSG00000027596 a ENSMUST00000148300 - NO_TRANSLATION retained_intron ENSMUSG00000027596 a ENSMUST00000148402 ENSMUSP00000121072 TRANSLATION protein_coding stop - 5 76.0 0.0 0.0 0.0 23.4 0.0 2,-3 0.0031 - -2.0 MINOR ENSMUSG00000050603 Or8k16 ENSMUST00000054868 ENSMUSP00000061191 TRANSLATION protein_coding - CCDS16215.1 - 313.0 0.0 1.0 11.5 157.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074890 Lcmt2 ENSMUST00000099486 ENSMUSP00000097085 TRANSLATION protein_coding - - 1 441.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0019 - 0.0 MINOR ENSMUSG00000074890 Lcmt2 ENSMUST00000110674 ENSMUSP00000106302 TRANSLATION protein_coding - CCDS50682.1 - 686.0 18.0 0.48 7.5 89.3 0.0 -4,-1 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000005803 Sqor ENSMUST00000110506 ENSMUSP00000106133 TRANSLATION protein_coding - CCDS16669.1 1 450.0 34.0 7.83 19.8 0.0 0.0 -2,2 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000005803 Sqor ENSMUST00000176999 - NO_TRANSLATION retained_intron ENSMUSG00000005803 Sqor ENSMUST00000124460 ENSMUSP00000135012 TRANSLATION protein_coding stop - 5 42.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0212 - -2.0 MINOR ENSMUSG00000005803 Sqor ENSMUST00000147310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005803 Sqor ENSMUST00000176343 ENSMUSP00000135786 TRANSLATION protein_coding start - 5 193.0 8.0 2.83 0.0 0.0 0.0 -4,-7 0.0082 8 -2.0 MINOR ENSMUSG00000005803 Sqor ENSMUST00000126403 ENSMUSP00000117575 TRANSLATION nonsense_mediated_decay - - 5 300.0 26.0 4.6 0.0 0.0 0.0 -2,2 0.0337 14 -2.0 MINOR ENSMUSG00000005803 Sqor ENSMUST00000147475 ENSMUSP00000135045 TRANSLATION protein_coding stop - 3 45.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0212 - -2.0 MINOR ENSMUSG00000005803 Sqor ENSMUST00000141698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005803 Sqor ENSMUST00000005953 ENSMUSP00000005953 TRANSLATION protein_coding - CCDS16669.1 1 450.0 34.0 7.83 19.8 0.0 0.0 -2,2 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000039063 Echdc3 ENSMUST00000114941 - NO_TRANSLATION retained_intron ENSMUSG00000039063 Echdc3 ENSMUST00000042658 ENSMUSP00000037371 TRANSLATION protein_coding - CCDS15672.1 1 300.0 15.0 4.2 8.1 175.9 0.0 -2,2 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000039063 Echdc3 ENSMUST00000132810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017943 Gdap1l1 ENSMUST00000109421 ENSMUSP00000105048 TRANSLATION protein_coding - - 1 370.0 11.0 5.4 28.8 56.4 1.0 -4,-5 0.7634 11 18.0 ALTERNATIVE:1 ENSMUSG00000017943 Gdap1l1 ENSMUST00000137070 ENSMUSP00000119421 TRANSLATION protein_coding stop - 5 266.0 11.0 4.2 0.0 68.3 0.0 -4,-5 0.0071 9 -2.0 MINOR ENSMUSG00000017943 Gdap1l1 ENSMUST00000018087 ENSMUSP00000018087 TRANSLATION protein_coding - CCDS50791.1 1 367.0 11.0 5.4 28.8 67.4 1.0 -4,-5 1.0 11 18.0 PRINCIPAL:4 ENSMUSG00000017943 Gdap1l1 ENSMUST00000109420 ENSMUSP00000105047 TRANSLATION protein_coding - CCDS50791.1 1 367.0 11.0 5.4 28.8 67.4 1.0 -4,-5 1.0 11 18.0 PRINCIPAL:4 ENSMUSG00000075181 Or8k28 ENSMUST00000099885 ENSMUSP00000097470 TRANSLATION protein_coding - CCDS16257.1 - 313.0 0.0 1.0 11.0 169.2 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093804 Or4f7 ENSMUST00000216114 ENSMUSP00000149015 TRANSLATION protein_coding - CCDS16534.1 5 312.0 0.0 1.0 12.5 145.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093804 Or4f7 ENSMUST00000099609 ENSMUSP00000097204 TRANSLATION protein_coding - CCDS16534.1 - 312.0 0.0 1.0 12.5 145.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043727 F830045P16Rik ENSMUST00000050309 ENSMUSP00000058047 TRANSLATION protein_coding - CCDS16728.1 1 487.0 0.0 2.08 0.0 139.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038523 1700003F12Rik ENSMUST00000135641 - NO_TRANSLATION retained_intron ENSMUSG00000038523 1700003F12Rik ENSMUST00000045116 ENSMUSP00000035523 TRANSLATION protein_coding - CCDS16933.1 1 197.0 0.0 0.0 0.0 352.0 0.0 -4,-7 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000038523 1700003F12Rik ENSMUST00000109709 ENSMUSP00000105331 TRANSLATION protein_coding - - 3 210.0 0.0 0.0 0.0 337.0 0.0 -4,-5 0.0174 - 0.0 MINOR ENSMUSG00000068134 Zfp120 ENSMUST00000122859 ENSMUSP00000114205 TRANSLATION nonsense_mediated_decay - - 1 89.0 0.0 1.66 0.0 82.9 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000068134 Zfp120 ENSMUST00000109931 ENSMUSP00000105557 TRANSLATION protein_coding - CCDS38264.1 1 130.0 0.0 2.06 0.1 82.9 0.0 0,-3 0.0201 - 3.762 MINOR ENSMUSG00000068134 Zfp120 ENSMUST00000089207 ENSMUSP00000086615 TRANSLATION protein_coding - CCDS38263.1 1 436.0 39.0 3.18 0.1 263.7 0.0 0,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000068134 Zfp120 ENSMUST00000142792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027002 Nckap1 ENSMUST00000028386 ENSMUSP00000028386 TRANSLATION protein_coding - CCDS16177.1 1 1128.0 0.0 25.085 27.4 1733.6 1.0 -4,-6 1.0 35 16.0 PRINCIPAL:1 ENSMUSG00000027002 Nckap1 ENSMUST00000111760 ENSMUSP00000107390 TRANSLATION protein_coding - CCDS71082.1 1 1134.0 0.0 24.755 27.4 1722.6 1.0 -4,-7 0.9401 35 14.68 MINOR ENSMUSG00000027002 Nckap1 ENSMUST00000134587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027002 Nckap1 ENSMUST00000131872 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027002 Nckap1 ENSMUST00000154793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032671 A930018P22Rik ENSMUST00000040374 ENSMUSP00000044861 TRANSLATION protein_coding - CCDS16488.1 1 194.0 0.0 0.95 0.0 0.0 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038831 Ralgps1 ENSMUST00000091039 ENSMUSP00000088563 TRANSLATION protein_coding - CCDS15939.1 1 585.0 0.0 11.3 14.1 216.2 0.0 -2,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000038831 Ralgps1 ENSMUST00000113164 - NO_TRANSLATION retained_intron ENSMUSG00000038831 Ralgps1 ENSMUST00000131298 ENSMUSP00000118363 TRANSLATION protein_coding - CCDS79779.1 1 515.0 0.0 11.3 7.5 216.2 0.0 -2,-5 0.7567 4 13.984 MINOR ENSMUSG00000038831 Ralgps1 ENSMUST00000113165 ENSMUSP00000108790 TRANSLATION protein_coding - - 5 557.0 0.0 11.3 6.1 216.2 0.0 -2,-5 0.5625 3 13.556 MINOR ENSMUSG00000038831 Ralgps1 ENSMUST00000042615 ENSMUSP00000048451 TRANSLATION protein_coding - CCDS71031.1 1 497.0 0.0 10.8 1.7 191.5 0.0 -2,-5 0.14 3 9.728 MINOR ENSMUSG00000038831 Ralgps1 ENSMUST00000138704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014077 Chp1 ENSMUST00000154406 - NO_TRANSLATION retained_intron ENSMUSG00000014077 Chp1 ENSMUST00000132448 ENSMUSP00000122946 TRANSLATION protein_coding stop - 5 33.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000014077 Chp1 ENSMUST00000119172 ENSMUSP00000114013 TRANSLATION protein_coding - - 2 191.0 17.0 5.63 0.0 46.0 0.0 -4,-5 0.0574 12 17.598 MINOR ENSMUSG00000014077 Chp1 ENSMUST00000014221 ENSMUSP00000014221 TRANSLATION protein_coding - CCDS16604.1 1 195.0 17.0 5.83 34.0 46.0 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000014077 Chp1 ENSMUST00000137585 - NO_TRANSLATION retained_intron ENSMUSG00000027346 Gpcpd1 ENSMUST00000140867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027346 Gpcpd1 ENSMUST00000124107 ENSMUSP00000122751 TRANSLATION protein_coding stop - 2 188.0 0.0 3.86 0.0 50.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000027346 Gpcpd1 ENSMUST00000145694 ENSMUSP00000116457 TRANSLATION nonsense_mediated_decay - - 1 117.0 0.0 3.5 0.0 50.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000027346 Gpcpd1 ENSMUST00000148833 ENSMUSP00000116156 TRANSLATION nonsense_mediated_decay - - 1 102.0 0.0 2.25 0.0 50.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000027346 Gpcpd1 ENSMUST00000110136 ENSMUSP00000105763 TRANSLATION protein_coding - CCDS71151.1 1 491.0 8.0 5.48 2.1 206.5 0.0 -4,-5 0.0496 9 9.33 MINOR ENSMUSG00000027346 Gpcpd1 ENSMUST00000127712 - NO_TRANSLATION retained_intron ENSMUSG00000027346 Gpcpd1 ENSMUST00000028822 ENSMUSP00000028822 TRANSLATION protein_coding - - 5 444.0 8.0 5.48 0.0 206.1 0.0 -4,-5 0.0 8 8.976 MINOR ENSMUSG00000027346 Gpcpd1 ENSMUST00000124632 ENSMUSP00000117217 TRANSLATION nonsense_mediated_decay start - 3 27.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027346 Gpcpd1 ENSMUST00000110135 ENSMUSP00000105762 TRANSLATION protein_coding stop - 3 157.0 0.0 3.875 0.0 50.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000027346 Gpcpd1 ENSMUST00000149854 ENSMUSP00000116949 TRANSLATION nonsense_mediated_decay - - 1 107.0 0.0 2.25 0.0 50.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000027346 Gpcpd1 ENSMUST00000060955 ENSMUSP00000062221 TRANSLATION protein_coding - CCDS38246.1 1 675.0 8.0 9.1325 11.0 256.5 0.0 -4,-6 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000027346 Gpcpd1 ENSMUST00000131617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027346 Gpcpd1 ENSMUST00000110142 ENSMUSP00000105769 TRANSLATION protein_coding - CCDS38246.1 5 675.0 8.0 9.1325 11.0 256.5 0.0 -4,-6 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000108891 Or4f4-ps1 ENSMUST00000121345 ENSMUSP00000153499 TRANSLATION protein_coding - - 5 326.0 0.0 1.0 0.0 155.9 0.0 -4,-6 0.8019 - 12.0 PRINCIPAL:1 ENSMUSG00000026767 Mindy3 ENSMUST00000130225 - NO_TRANSLATION retained_intron ENSMUSG00000026767 Mindy3 ENSMUST00000154952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026767 Mindy3 ENSMUST00000153690 - NO_TRANSLATION retained_intron ENSMUSG00000026767 Mindy3 ENSMUST00000195084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026767 Mindy3 ENSMUST00000124603 ENSMUSP00000117457 TRANSLATION protein_coding stop - 5 230.0 3.0 1.2 0.0 94.7 0.0 -4,-6 0.0146 2 -2.0 MINOR ENSMUSG00000026767 Mindy3 ENSMUST00000151529 ENSMUSP00000122798 TRANSLATION nonsense_mediated_decay start - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026767 Mindy3 ENSMUST00000028105 ENSMUSP00000028105 TRANSLATION protein_coding - CCDS15690.1 1 444.0 3.0 1.2 28.9 176.5 0.0 -4,-6 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000026767 Mindy3 ENSMUST00000154899 ENSMUSP00000121476 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 0.0 0.0 35.6 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026767 Mindy3 ENSMUST00000129348 ENSMUSP00000121265 TRANSLATION protein_coding start/stop - 5 160.0 0.0 0.0 0.0 91.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026767 Mindy3 ENSMUST00000130097 - NO_TRANSLATION retained_intron ENSMUSG00000026767 Mindy3 ENSMUST00000129993 ENSMUSP00000141479 TRANSLATION protein_coding stop - 5 86.0 0.0 0.0 0.0 61.2 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000026767 Mindy3 ENSMUST00000144645 ENSMUSP00000116836 TRANSLATION nonsense_mediated_decay - - 1 88.0 0.0 0.0 0.0 37.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026767 Mindy3 ENSMUST00000124515 ENSMUSP00000120193 TRANSLATION protein_coding stop - 5 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026767 Mindy3 ENSMUST00000194533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026767 Mindy3 ENSMUST00000135397 ENSMUSP00000114789 TRANSLATION nonsense_mediated_decay start - 5 64.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026767 Mindy3 ENSMUST00000129489 ENSMUSP00000122501 TRANSLATION nonsense_mediated_decay - - 1 90.0 0.0 0.0 0.0 35.5 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000026767 Mindy3 ENSMUST00000137082 - NO_TRANSLATION retained_intron ENSMUSG00000026767 Mindy3 ENSMUST00000195125 - NO_TRANSLATION retained_intron ENSMUSG00000026767 Mindy3 ENSMUST00000155530 ENSMUSP00000116939 TRANSLATION nonsense_mediated_decay - - 1 135.0 0.0 0.0 0.0 46.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026767 Mindy3 ENSMUST00000195758 - NO_TRANSLATION retained_intron ENSMUSG00000026917 Wdr5 ENSMUST00000144315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026917 Wdr5 ENSMUST00000140396 ENSMUSP00000121654 TRANSLATION protein_coding start - 5 281.0 0.0 8.179 0.0 178.7 0.0 -4,-5 0.0001 6 -2.0 MINOR ENSMUSG00000026917 Wdr5 ENSMUST00000113952 ENSMUSP00000109585 TRANSLATION protein_coding - CCDS15829.1 1 334.0 0.0 9.71 36.9 217.3 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000026917 Wdr5 ENSMUST00000125088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056941 Commd7 ENSMUST00000147822 - NO_TRANSLATION retained_intron ENSMUSG00000056941 Commd7 ENSMUST00000109782 ENSMUSP00000105404 TRANSLATION protein_coding - CCDS57187.1 1 129.0 0.0 1.857 0.3 66.3 0.0 -4,-6 0.2131 2 12.0 MINOR ENSMUSG00000056941 Commd7 ENSMUST00000071852 ENSMUSP00000071752 TRANSLATION protein_coding - CCDS16912.2 1 200.0 0.0 1.857 27.1 66.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000038844 Kif16b ENSMUST00000043589 ENSMUSP00000042551 TRANSLATION protein_coding - CCDS38251.1 2 1312.0 11.0 13.978 2.5 453.1 0.0 -4,-2 1.0 19 15.0 PRINCIPAL:2 ENSMUSG00000038844 Kif16b ENSMUST00000142078 - NO_TRANSLATION retained_intron ENSMUSG00000038844 Kif16b ENSMUST00000212106 ENSMUSP00000148706 TRANSLATION protein_coding start - 5 719.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0064 6 -2.0 MINOR ENSMUSG00000038844 Kif16b ENSMUST00000230763 ENSMUSP00000154926 TRANSLATION protein_coding - - - 1323.0 11.0 13.978 1.3 453.1 0.0 -4,-2 0.4393 20 14.2 ALTERNATIVE:2 ENSMUSG00000038844 Kif16b ENSMUST00000211861 ENSMUSP00000148731 TRANSLATION protein_coding - - 5 1386.0 11.0 10.228 0.3 400.7 0.0 -4,-2 0.0665 18 8.0 MINOR ENSMUSG00000052155 Acvr2a ENSMUST00000063886 ENSMUSP00000067305 TRANSLATION protein_coding - CCDS16021.1 1 513.0 17.0 9.0 32.5 141.5 0.0 3,-2 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000052155 Acvr2a ENSMUST00000156681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074955 Or4f56 ENSMUST00000213405 ENSMUSP00000149215 TRANSLATION protein_coding - CCDS16535.1 5 312.0 0.0 1.0 9.8 139.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074955 Or4f56 ENSMUST00000216310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074955 Or4f56 ENSMUST00000099608 ENSMUSP00000097203 TRANSLATION protein_coding - CCDS16535.1 - 312.0 0.0 1.0 9.8 139.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074955 Or4f56 ENSMUST00000213737 ENSMUSP00000149852 TRANSLATION protein_coding - CCDS16535.1 5 312.0 0.0 1.0 9.8 139.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027261 Hao1 ENSMUST00000140794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027261 Hao1 ENSMUST00000028704 ENSMUSP00000028704 TRANSLATION protein_coding - CCDS16783.1 1 370.0 31.0 7.5 22.3 459.7 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000027489 Necab3 ENSMUST00000130824 - NO_TRANSLATION retained_intron ENSMUSG00000027489 Necab3 ENSMUST00000109716 ENSMUSP00000105338 TRANSLATION protein_coding - - 1 329.0 5.0 0.0 0.0 61.4 0.0 0,-3 0.034 3 10.85 MINOR ENSMUSG00000027489 Necab3 ENSMUST00000000895 ENSMUSP00000000895 TRANSLATION protein_coding - CCDS50766.1 1 353.0 5.0 0.0 7.6 63.0 0.0 0,-3 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000027489 Necab3 ENSMUST00000125793 ENSMUSP00000117090 TRANSLATION protein_coding stop - 5 168.0 3.0 0.0 0.0 0.0 0.0 0,-2 0.0004 1 -2.0 MINOR ENSMUSG00000027489 Necab3 ENSMUST00000135530 - NO_TRANSLATION retained_intron ENSMUSG00000027489 Necab3 ENSMUST00000149725 - NO_TRANSLATION retained_intron ENSMUSG00000027489 Necab3 ENSMUST00000124382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027570 Col9a3 ENSMUST00000103059 ENSMUSP00000099348 TRANSLATION protein_coding - CCDS17180.1 1 680.0 0.0 10.77934 1.8 148.5 0.0 4,-1 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000027570 Col9a3 ENSMUST00000132527 ENSMUSP00000128718 TRANSLATION protein_coding - CCDS17180.1 5 680.0 0.0 10.77934 1.8 148.5 0.0 4,-1 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000027570 Col9a3 ENSMUST00000165224 - NO_TRANSLATION retained_intron ENSMUSG00000027570 Col9a3 ENSMUST00000129090 - NO_TRANSLATION retained_intron ENSMUSG00000027570 Col9a3 ENSMUST00000141056 - NO_TRANSLATION retained_intron ENSMUSG00000027570 Col9a3 ENSMUST00000165879 - NO_TRANSLATION retained_intron ENSMUSG00000027481 Bpifb2 ENSMUST00000028983 ENSMUSP00000028983 TRANSLATION protein_coding - CCDS16919.1 1 462.0 0.0 4.61 0.1 178.9 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000027481 Bpifb2 ENSMUST00000129776 - NO_TRANSLATION retained_intron ENSMUSG00000042499 Hoxd11 ENSMUST00000048086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042499 Hoxd11 ENSMUST00000142312 ENSMUSP00000122582 TRANSLATION protein_coding - CCDS16140.1 1 336.0 0.0 1.0 6.6 215.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075141 Or9m1b ENSMUST00000215457 ENSMUSP00000148857 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 16.4 156.0 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075141 Or9m1b ENSMUST00000099839 ENSMUSP00000097427 TRANSLATION protein_coding - CCDS16320.1 - 319.0 0.0 1.0 0.0 156.0 7.0 -4,-7 0.3558 - 12.0 MINOR ENSMUSG00000039536 Stau1 ENSMUST00000109236 ENSMUSP00000104859 TRANSLATION protein_coding - CCDS17093.1 1 487.0 0.0 6.365 0.4 254.1 0.0 -4,-7 1.0 17 8.0 PRINCIPAL:2 ENSMUSG00000039536 Stau1 ENSMUST00000130790 - NO_TRANSLATION retained_intron ENSMUSG00000039536 Stau1 ENSMUST00000142481 - NO_TRANSLATION retained_intron ENSMUSG00000039536 Stau1 ENSMUST00000109235 ENSMUSP00000104858 TRANSLATION protein_coding - CCDS50800.1 1 489.0 0.0 6.365 0.4 254.1 0.0 -4,-7 0.5986 18 8.0 ALTERNATIVE:2 ENSMUSG00000039536 Stau1 ENSMUST00000149454 - NO_TRANSLATION retained_intron ENSMUSG00000039536 Stau1 ENSMUST00000109238 ENSMUSP00000104861 TRANSLATION protein_coding - CCDS50801.1 1 495.0 0.0 6.035 0.4 243.7 0.0 -4,-7 0.1843 18 6.674 MINOR ENSMUSG00000039536 Stau1 ENSMUST00000049412 ENSMUSP00000042626 TRANSLATION protein_coding - CCDS71197.1 1 485.0 0.0 6.365 0.4 254.1 0.0 -4,-7 0.5986 17 8.0 ALTERNATIVE:2 ENSMUSG00000039536 Stau1 ENSMUST00000154506 - NO_TRANSLATION retained_intron ENSMUSG00000039536 Stau1 ENSMUST00000134664 - NO_TRANSLATION retained_intron ENSMUSG00000039536 Stau1 ENSMUST00000184390 ENSMUSP00000139039 TRANSLATION nonsense_mediated_decay - - 1 436.0 0.0 3.835 0.0 81.8 0.0 -4,-7 0.0012 10 -2.0 MINOR ENSMUSG00000039536 Stau1 ENSMUST00000130104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027108 Ola1 ENSMUST00000112055 ENSMUSP00000107686 TRANSLATION protein_coding - - 5 281.0 15.0 5.535 0.0 82.0 0.0 -4,-6 0.0 9 6.0 MINOR ENSMUSG00000027108 Ola1 ENSMUST00000133228 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027108 Ola1 ENSMUST00000136684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027108 Ola1 ENSMUST00000152608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027108 Ola1 ENSMUST00000028517 ENSMUSP00000028517 TRANSLATION protein_coding - CCDS16124.1 1 396.0 15.0 9.375 36.9 220.8 0.0 -4,-6 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000027108 Ola1 ENSMUST00000100015 ENSMUSP00000097592 TRANSLATION protein_coding - CCDS16125.1 1 270.0 12.0 5.375 0.0 82.0 0.0 -4,-6 0.0021 9 4.002 MINOR ENSMUSG00000027080 Med19 ENSMUST00000102645 ENSMUSP00000099705 TRANSLATION protein_coding - CCDS16189.1 1 244.0 0.0 1.6 8.5 280.1 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000027080 Med19 ENSMUST00000141595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026970 Rbms1 ENSMUST00000128866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026970 Rbms1 ENSMUST00000123046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026970 Rbms1 ENSMUST00000164147 ENSMUSP00000131306 TRANSLATION protein_coding - CCDS50590.1 1 417.0 0.0 5.265 4.7 110.5 0.0 -4,-2 0.3676 4 12.288 MINOR ENSMUSG00000026970 Rbms1 ENSMUST00000153555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026970 Rbms1 ENSMUST00000125485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026970 Rbms1 ENSMUST00000112509 ENSMUSP00000108128 TRANSLATION protein_coding - - 1 386.0 0.0 5.1 0.0 110.5 0.0 -4,-7 0.0265 4 11.07 MINOR ENSMUSG00000026970 Rbms1 ENSMUST00000151846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026970 Rbms1 ENSMUST00000028347 ENSMUSP00000028347 TRANSLATION protein_coding - CCDS50591.1 1 403.0 0.0 5.565 17.7 110.5 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000026970 Rbms1 ENSMUST00000132529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050015 Or1j4 ENSMUST00000215100 ENSMUSP00000149667 TRANSLATION protein_coding - CCDS15983.1 5 312.0 0.0 1.0 11.5 204.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050015 Or1j4 ENSMUST00000055130 ENSMUSP00000053105 TRANSLATION protein_coding - CCDS15983.1 - 312.0 0.0 1.0 11.5 204.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050015 Or1j4 ENSMUST00000214457 ENSMUSP00000150158 TRANSLATION protein_coding - CCDS15983.1 5 312.0 0.0 1.0 11.5 204.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041660 Bbox1 ENSMUST00000133608 ENSMUSP00000116663 TRANSLATION protein_coding stop - 2 145.0 4.0 3.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041660 Bbox1 ENSMUST00000046233 ENSMUSP00000046302 TRANSLATION protein_coding - CCDS16510.1 1 387.0 7.0 8.0 11.8 154.5 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000068205 Macrod2 ENSMUST00000156619 ENSMUSP00000121013 TRANSLATION protein_coding start - 5 75.0 1.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068205 Macrod2 ENSMUST00000138485 - NO_TRANSLATION retained_intron ENSMUSG00000068205 Macrod2 ENSMUST00000138786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068205 Macrod2 ENSMUST00000154505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068205 Macrod2 ENSMUST00000150460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068205 Macrod2 ENSMUST00000110061 ENSMUSP00000105688 TRANSLATION protein_coding - - 1 77.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000068205 Macrod2 ENSMUST00000110063 ENSMUSP00000105690 TRANSLATION protein_coding - - 5 125.0 2.0 2.3 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000068205 Macrod2 ENSMUST00000124403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068205 Macrod2 ENSMUST00000139039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068205 Macrod2 ENSMUST00000110067 ENSMUSP00000105694 TRANSLATION protein_coding - - 5 423.0 18.0 6.46 1.0 139.8 0.0 -4,-5 0.2512 4 14.0 ALTERNATIVE:2 ENSMUSG00000068205 Macrod2 ENSMUST00000043836 ENSMUSP00000041780 TRANSLATION protein_coding - CCDS16805.1 1 114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0274 - 0.0 MINOR ENSMUSG00000068205 Macrod2 ENSMUST00000078027 ENSMUSP00000077174 TRANSLATION protein_coding - CCDS50733.1 5 475.0 18.0 6.46 3.3 139.8 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:2 ENSMUSG00000068205 Macrod2 ENSMUST00000110062 ENSMUSP00000105689 TRANSLATION protein_coding - - 1 77.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000068205 Macrod2 ENSMUST00000110064 ENSMUSP00000105691 TRANSLATION protein_coding - CCDS50733.1 1 475.0 18.0 6.46 3.3 139.8 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:2 ENSMUSG00000015335 Zdhhc12 ENSMUST00000137001 - NO_TRANSLATION retained_intron ENSMUSG00000015335 Zdhhc12 ENSMUST00000148717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015335 Zdhhc12 ENSMUST00000081838 ENSMUSP00000080521 TRANSLATION protein_coding - CCDS15869.1 1 281.0 7.0 2.1 0.0 112.1 4.0 -4,-5 0.165 1 18.0 MINOR ENSMUSG00000015335 Zdhhc12 ENSMUST00000102865 ENSMUSP00000099929 TRANSLATION protein_coding - CCDS15868.1 1 267.0 7.0 2.1 7.9 112.1 4.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000074934 Grem1 ENSMUST00000099575 ENSMUSP00000097170 TRANSLATION protein_coding - CCDS16560.1 1 184.0 0.0 1.0 26.8 145.2 0.0 4,-1 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000027351 Spred1 ENSMUST00000110901 ENSMUSP00000106526 TRANSLATION protein_coding - CCDS71115.1 1 229.0 0.0 2.165 0.0 46.9 0.0 -4,-5 0.0911 5 6.57 MINOR ENSMUSG00000027351 Spred1 ENSMUST00000028829 ENSMUSP00000028829 TRANSLATION protein_coding - CCDS16570.1 1 444.0 0.0 2.165 11.1 137.4 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000027376 Prom2 ENSMUST00000103214 ENSMUSP00000099503 TRANSLATION protein_coding - CCDS50704.1 1 821.0 0.0 9.4 0.0 939.3 6.0 1,-2 0.5449 19 8.0 ALTERNATIVE:2 ENSMUSG00000027376 Prom2 ENSMUST00000028855 ENSMUSP00000028855 TRANSLATION protein_coding - CCDS16704.1 1 835.0 0.0 9.4 2.1 939.3 6.0 1,-2 1.0 20 9.0 PRINCIPAL:2 ENSMUSG00000027376 Prom2 ENSMUST00000155581 - NO_TRANSLATION retained_intron ENSMUSG00000027376 Prom2 ENSMUST00000140156 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027401 Tgm3 ENSMUST00000110299 ENSMUSP00000105928 TRANSLATION protein_coding - CCDS38240.1 1 693.0 11.0 11.25 5.5 324.1 0.0 -4,-2 1.0 29 20.0 PRINCIPAL:1 ENSMUSG00000026883 Dab2ip ENSMUST00000135741 ENSMUSP00000122341 TRANSLATION protein_coding - CCDS79788.1 1 1154.0 0.0 6.282 0.0 780.0 0.0 -4,-6 0.363 25 11.508 MINOR ENSMUSG00000026883 Dab2ip ENSMUST00000124098 ENSMUSP00000119058 TRANSLATION protein_coding start - 1 1083.0 0.0 6.282 0.0 788.2 0.0 -4,-2 0.3065 25 -2.0 MINOR ENSMUSG00000026883 Dab2ip ENSMUST00000112981 ENSMUSP00000108605 TRANSLATION nonsense_mediated_decay start - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000026883 Dab2ip ENSMUST00000112992 ENSMUSP00000108616 TRANSLATION protein_coding - - 5 1138.0 0.0 6.282 2.0 464.8 0.0 -4,-7 0.1778 26 6.342 MINOR ENSMUSG00000026883 Dab2ip ENSMUST00000156465 - NO_TRANSLATION retained_intron ENSMUSG00000026883 Dab2ip ENSMUST00000091010 ENSMUSP00000088532 TRANSLATION protein_coding - CCDS50578.1 1 1189.0 0.0 6.282 6.4 788.2 0.0 -4,-7 0.6868 26 13.842 MINOR ENSMUSG00000026883 Dab2ip ENSMUST00000145698 ENSMUSP00000114915 TRANSLATION nonsense_mediated_decay - - 1 163.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000026883 Dab2ip ENSMUST00000156669 ENSMUSP00000121506 TRANSLATION protein_coding start - 1 713.0 0.0 6.15 0.0 351.2 0.0 -4,-5 0.0161 19 -2.0 MINOR ENSMUSG00000026883 Dab2ip ENSMUST00000065001 ENSMUSP00000068832 TRANSLATION protein_coding - CCDS15965.2 1 1124.0 0.0 6.282 1.8 788.2 0.0 -4,-7 0.5511 25 12.273 MINOR ENSMUSG00000026883 Dab2ip ENSMUST00000112987 ENSMUSP00000108611 TRANSLATION protein_coding - - 5 1132.0 0.0 6.282 0.0 788.2 0.0 -4,-6 0.2401 26 12.0 MINOR ENSMUSG00000026883 Dab2ip ENSMUST00000112986 ENSMUSP00000108610 TRANSLATION protein_coding - CCDS50577.1 5 1132.0 0.0 6.282 2.0 780.0 0.0 -4,-5 0.4727 25 11.85 MINOR ENSMUSG00000026883 Dab2ip ENSMUST00000112983 ENSMUSP00000108607 TRANSLATION protein_coding - CCDS71045.1 1 1065.0 0.0 6.282 9.8 788.2 0.0 -4,-6 1.0 25 15.0 PRINCIPAL:1 ENSMUSG00000026883 Dab2ip ENSMUST00000138957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035399 Oser1 ENSMUST00000104954 ENSMUSP00000131932 TRANSLATION protein_coding - CCDS17009.1 1 291.0 0.0 0.0 14.5 306.0 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000035399 Oser1 ENSMUST00000046908 ENSMUSP00000039190 TRANSLATION protein_coding - CCDS17009.1 1 291.0 0.0 0.0 14.5 306.0 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000035399 Oser1 ENSMUST00000123659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035399 Oser1 ENSMUST00000141301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035399 Oser1 ENSMUST00000139142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035399 Oser1 ENSMUST00000140454 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035399 Oser1 ENSMUST00000127038 ENSMUSP00000123124 TRANSLATION protein_coding stop - 5 70.0 0.0 0.0 0.0 133.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027332 Ivd ENSMUST00000141836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027332 Ivd ENSMUST00000152191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027332 Ivd ENSMUST00000126082 - NO_TRANSLATION retained_intron ENSMUSG00000027332 Ivd ENSMUST00000154104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027332 Ivd ENSMUST00000150162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027332 Ivd ENSMUST00000028807 ENSMUSP00000028807 TRANSLATION protein_coding - CCDS16586.1 1 424.0 30.0 10.6 13.5 356.8 0.0 -4,0 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000027332 Ivd ENSMUST00000140282 - NO_TRANSLATION retained_intron ENSMUSG00000027332 Ivd ENSMUST00000125766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027001 Dusp19 ENSMUST00000151204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027001 Dusp19 ENSMUST00000125033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027001 Dusp19 ENSMUST00000028384 ENSMUSP00000028384 TRANSLATION protein_coding - CCDS16178.1 1 220.0 7.0 3.5 0.1 111.1 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000027001 Dusp19 ENSMUST00000147290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027001 Dusp19 ENSMUST00000148084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075166 Or8i2 ENSMUST00000214857 ENSMUSP00000150156 TRANSLATION protein_coding - CCDS16276.1 5 310.0 0.0 1.0 13.8 159.5 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075166 Or8i2 ENSMUST00000099869 ENSMUSP00000097454 TRANSLATION protein_coding - CCDS16276.1 - 310.0 0.0 1.0 13.8 159.5 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075166 Or8i2 ENSMUST00000215972 ENSMUSP00000149240 TRANSLATION protein_coding - CCDS16276.1 5 310.0 0.0 1.0 13.8 159.5 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000054484 Tmem62 ENSMUST00000123656 - NO_TRANSLATION retained_intron ENSMUSG00000054484 Tmem62 ENSMUST00000135599 - NO_TRANSLATION retained_intron ENSMUSG00000054484 Tmem62 ENSMUST00000147347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054484 Tmem62 ENSMUST00000139428 ENSMUSP00000118808 TRANSLATION nonsense_mediated_decay - - 1 333.0 7.0 6.5 0.0 39.1 0.0 2,-1 0.0632 2 -2.0 MINOR ENSMUSG00000054484 Tmem62 ENSMUST00000130010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054484 Tmem62 ENSMUST00000110686 ENSMUSP00000106314 TRANSLATION protein_coding - - 1 513.0 4.0 11.08 4.7 0.0 4.0 -4,-5 0.2645 6 5.75 MINOR ENSMUSG00000054484 Tmem62 ENSMUST00000067582 ENSMUSP00000064310 TRANSLATION protein_coding - CCDS16629.1 1 643.0 7.0 13.58 6.6 39.1 4.0 2,-1 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000027164 Traf6 ENSMUST00000143341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027164 Traf6 ENSMUST00000004949 ENSMUSP00000004949 TRANSLATION protein_coding - CCDS16464.1 1 530.0 22.0 4.9 5.9 108.5 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000027164 Traf6 ENSMUST00000144063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040174 Alkbh3 ENSMUST00000126378 ENSMUSP00000122043 TRANSLATION protein_coding stop - 5 202.0 9.0 3.75 0.0 0.0 0.0 -4,-7 0.0101 8 -2.0 MINOR ENSMUSG00000040174 Alkbh3 ENSMUST00000127231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040174 Alkbh3 ENSMUST00000126255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040174 Alkbh3 ENSMUST00000125473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040174 Alkbh3 ENSMUST00000130289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040174 Alkbh3 ENSMUST00000130403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040174 Alkbh3 ENSMUST00000138107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040174 Alkbh3 ENSMUST00000040005 ENSMUSP00000038721 TRANSLATION protein_coding - CCDS38184.1 1 286.0 17.0 6.5 8.1 0.0 0.0 -4,-7 1.0 10 14.289 PRINCIPAL:3 ENSMUSG00000040174 Alkbh3 ENSMUST00000156763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040174 Alkbh3 ENSMUST00000138046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040174 Alkbh3 ENSMUST00000111240 ENSMUSP00000106871 TRANSLATION protein_coding - - 5 287.0 17.0 6.5 10.3 0.0 0.0 -4,-7 0.9272 9 15.0 ALTERNATIVE:1 ENSMUSG00000111772 Or8k41 ENSMUST00000217292 ENSMUSP00000149449 TRANSLATION protein_coding - CCDS16258.1 5 313.0 0.0 1.0 11.0 181.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111772 Or8k41 ENSMUST00000216534 ENSMUSP00000149372 TRANSLATION protein_coding - CCDS16258.1 - 313.0 0.0 1.0 11.0 181.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000002546 Golga2 ENSMUST00000129193 ENSMUSP00000115003 TRANSLATION protein_coding start/stop - 5 282.0 0.0 4.1 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000002546 Golga2 ENSMUST00000100194 ENSMUSP00000097768 TRANSLATION protein_coding - - 1 1014.0 0.0 5.75 0.7 980.0 0.0 -4,-5 0.3779 30 8.0 ALTERNATIVE:2 ENSMUSG00000002546 Golga2 ENSMUST00000126276 - NO_TRANSLATION retained_intron ENSMUSG00000002546 Golga2 ENSMUST00000139494 ENSMUSP00000117476 TRANSLATION protein_coding stop - 5 200.0 0.0 0.8 0.0 0.0 0.0 -4,0 0.0005 3 -2.0 MINOR ENSMUSG00000002546 Golga2 ENSMUST00000113377 ENSMUSP00000109004 TRANSLATION protein_coding - CCDS38101.1 5 999.0 0.0 5.75 1.1 980.0 0.0 -4,-7 0.6249 29 9.0 ALTERNATIVE:2 ENSMUSG00000002546 Golga2 ENSMUST00000081670 ENSMUSP00000080374 TRANSLATION protein_coding - - 1 955.0 0.0 5.75 0.0 980.0 0.0 -4,-5 0.2148 29 8.0 ALTERNATIVE:2 ENSMUSG00000002546 Golga2 ENSMUST00000149141 - NO_TRANSLATION retained_intron ENSMUSG00000002546 Golga2 ENSMUST00000239447 ENSMUSP00000159316 TRANSLATION protein_coding - - - 987.0 0.0 5.75 0.7 980.0 0.0 -4,-5 0.2799 29 8.0 ALTERNATIVE:2 ENSMUSG00000002546 Golga2 ENSMUST00000239474 ENSMUSP00000159347 TRANSLATION protein_coding - CCDS38100.1 - 1026.0 0.0 5.75 1.1 980.0 0.0 -4,-7 1.0 30 9.0 PRINCIPAL:2 ENSMUSG00000002546 Golga2 ENSMUST00000127276 - NO_TRANSLATION retained_intron ENSMUSG00000002546 Golga2 ENSMUST00000131712 ENSMUSP00000114169 TRANSLATION protein_coding stop - 5 331.0 0.0 4.75 0.0 0.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000002546 Golga2 ENSMUST00000147707 ENSMUSP00000121886 TRANSLATION protein_coding start/stop - 3 272.0 0.0 2.95 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000002546 Golga2 ENSMUST00000146544 - NO_TRANSLATION retained_intron ENSMUSG00000079037 Prnp ENSMUST00000091288 ENSMUSP00000088833 TRANSLATION protein_coding - CCDS16766.1 1 254.0 0.0 0.8 3.3 176.9 0.0 3,-2 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000079037 Prnp ENSMUST00000142070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075193 Or8k20 ENSMUST00000216432 ENSMUSP00000149318 TRANSLATION protein_coding - CCDS16249.1 5 308.0 0.0 1.0 6.8 180.2 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075193 Or8k20 ENSMUST00000099898 ENSMUSP00000097482 TRANSLATION protein_coding - CCDS16249.1 - 308.0 0.0 1.0 6.8 180.2 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075193 Or8k20 ENSMUST00000217294 ENSMUSP00000150061 TRANSLATION protein_coding - CCDS16249.1 5 308.0 0.0 1.0 6.8 180.2 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075193 Or8k20 ENSMUST00000217245 ENSMUSP00000150857 TRANSLATION protein_coding - CCDS16249.1 5 308.0 0.0 1.0 6.8 180.2 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000026796 Niban2 ENSMUST00000125347 - NO_TRANSLATION retained_intron ENSMUSG00000026796 Niban2 ENSMUST00000151607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026796 Niban2 ENSMUST00000150875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026796 Niban2 ENSMUST00000138781 ENSMUSP00000114232 TRANSLATION protein_coding stop - 2 82.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000026796 Niban2 ENSMUST00000028135 ENSMUSP00000028135 TRANSLATION protein_coding - CCDS15934.1 1 749.0 0.0 12.16 5.0 0.0 0.0 -4,-5 1.0 22 8.0 PRINCIPAL:1 ENSMUSG00000026796 Niban2 ENSMUST00000154514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016349 Eef1a2 ENSMUST00000055990 ENSMUSP00000054556 TRANSLATION protein_coding - CCDS17201.1 1 463.0 14.0 7.0 36.9 374.3 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000108908 Or4f17-ps1 ENSMUST00000217845 ENSMUSP00000151814 TRANSLATION protein_coding - - 5 326.0 0.0 1.0 0.0 155.6 6.0 -4,-6 0.8177 - 12.0 PRINCIPAL:1 ENSMUSG00000108908 Or4f17-ps1 ENSMUST00000215245 ENSMUSP00000151131 TRANSLATION nonsense_mediated_decay - - 5 326.0 0.0 1.0 0.0 155.6 6.0 -4,-6 0.8177 - -2.0 MINOR ENSMUSG00000075068 Or4c3d ENSMUST00000099757 ENSMUSP00000097346 TRANSLATION protein_coding - CCDS16405.1 - 302.0 0.0 1.0 11.4 160.3 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075068 Or4c3d ENSMUST00000216475 ENSMUSP00000150438 TRANSLATION protein_coding - CCDS16405.1 5 302.0 0.0 1.0 11.4 160.3 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075068 Or4c3d ENSMUST00000111506 ENSMUSP00000107131 TRANSLATION protein_coding - CCDS16405.1 2 302.0 0.0 1.0 11.4 160.3 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054074 Skida1 ENSMUST00000091420 ENSMUSP00000088982 TRANSLATION protein_coding - CCDS57154.1 5 909.0 0.0 1.4 0.1 658.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054074 Skida1 ENSMUST00000142856 ENSMUSP00000122112 TRANSLATION protein_coding stop - 2 208.0 0.0 1.4 0.0 55.5 0.0 -4,-5 0.0439 - -2.0 MINOR ENSMUSG00000054074 Skida1 ENSMUST00000152908 ENSMUSP00000114785 TRANSLATION protein_coding stop - 3 65.0 0.0 1.0 0.0 28.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054074 Skida1 ENSMUST00000173604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044627 Swi5 ENSMUST00000127131 - NO_TRANSLATION retained_intron ENSMUSG00000044627 Swi5 ENSMUST00000183946 ENSMUSP00000139299 TRANSLATION protein_coding - CCDS50566.1 1 89.0 0.0 2.5 0.1 83.2 0.0 -4,-5 0.2329 5 8.0 ALTERNATIVE:2 ENSMUSG00000044627 Swi5 ENSMUST00000113397 ENSMUSP00000109024 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000044627 Swi5 ENSMUST00000113395 ENSMUSP00000109022 TRANSLATION protein_coding - CCDS50566.1 5 89.0 0.0 2.5 0.1 83.2 0.0 -4,-5 0.2329 5 8.0 ALTERNATIVE:2 ENSMUSG00000044627 Swi5 ENSMUST00000113400 ENSMUSP00000109027 TRANSLATION protein_coding - CCDS71026.1 1 121.0 0.0 2.5 0.0 83.2 0.0 -4,-7 0.2946 5 8.0 ALTERNATIVE:2 ENSMUSG00000044627 Swi5 ENSMUST00000140406 ENSMUSP00000139369 TRANSLATION nonsense_mediated_decay start - 5 140.0 0.0 1.75 0.0 57.5 0.0 -4,-2 0.0009 5 -2.0 MINOR ENSMUSG00000044627 Swi5 ENSMUST00000050410 ENSMUSP00000057512 TRANSLATION protein_coding - - 1 131.0 0.0 2.5 1.0 83.2 0.0 -4,-7 0.7608 5 8.0 PRINCIPAL:2 ENSMUSG00000026950 Neb ENSMUST00000131236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026950 Neb ENSMUST00000136769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026950 Neb ENSMUST00000238288 ENSMUSP00000158760 TRANSLATION protein_coding - - - 7488.0 0.0 1.0 0.7 2692.5 0.0 -4,-5 0.5562 349 8.0 ALTERNATIVE:2 ENSMUSG00000026950 Neb ENSMUST00000135200 ENSMUSP00000118735 TRANSLATION protein_coding start/stop - 5 768.0 0.0 1.0 0.0 348.0 0.0 -4,-5 0.0645 33 -2.0 MINOR ENSMUSG00000026950 Neb ENSMUST00000148356 ENSMUSP00000133401 TRANSLATION protein_coding start/stop - 5 342.0 0.0 0.0 0.0 183.9 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000026950 Neb ENSMUST00000209712 ENSMUSP00000147944 TRANSLATION protein_coding stop - 5 269.0 0.0 0.0 0.0 119.6 0.0 -4,-5 0.0007 12 -2.0 MINOR ENSMUSG00000026950 Neb ENSMUST00000137410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026950 Neb ENSMUST00000036934 ENSMUSP00000047763 TRANSLATION protein_coding - CCDS50584.1 5 7152.0 0.0 1.0 0.0 2539.5 0.0 -4,-5 0.7752 331 6.0 MINOR ENSMUSG00000026950 Neb ENSMUST00000210179 ENSMUSP00000147915 TRANSLATION protein_coding stop - 5 529.0 0.0 0.0 0.0 272.5 0.0 -4,-5 0.0038 26 -2.0 MINOR ENSMUSG00000026950 Neb ENSMUST00000238749 ENSMUSP00000158777 TRANSLATION protein_coding - - - 7523.0 0.0 1.0 0.3 2694.8 0.0 -4,-5 1.0 348 8.0 PRINCIPAL:2 ENSMUSG00000026950 Neb ENSMUST00000028320 ENSMUSP00000028320 TRANSLATION protein_coding - - 5 3044.0 0.0 1.0 0.0 988.1 0.0 -4,-7 0.2961 143 6.0 MINOR ENSMUSG00000026950 Neb ENSMUST00000075301 ENSMUSP00000074773 TRANSLATION protein_coding - - 5 6909.0 0.0 1.0 0.0 2403.9 0.0 -4,-5 0.4361 321 6.0 MINOR ENSMUSG00000026950 Neb ENSMUST00000152851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026950 Neb ENSMUST00000139672 ENSMUSP00000121411 TRANSLATION protein_coding start/stop - 1 1190.0 0.0 0.0 0.0 478.9 0.0 -4,-5 0.0251 51 -2.0 MINOR ENSMUSG00000051313 Or4c127 ENSMUST00000061701 ENSMUSP00000052387 TRANSLATION protein_coding - CCDS16401.1 - 304.0 0.0 2.75 2.4 145.7 8.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051313 Or4c127 ENSMUST00000111508 ENSMUSP00000107133 TRANSLATION protein_coding - CCDS16401.1 2 304.0 0.0 2.75 2.4 145.7 8.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051313 Or4c127 ENSMUST00000213868 ENSMUSP00000150533 TRANSLATION protein_coding stop - 2 116.0 0.0 1.75 0.0 44.9 5.0 -4,-6 0.0042 - -2.0 MINOR ENSMUSG00000051313 Or4c127 ENSMUST00000131072 ENSMUSP00000121666 TRANSLATION protein_coding stop - 3 94.0 0.0 1.0 0.0 33.4 3.0 -4,-6 0.0017 - -2.0 MINOR ENSMUSG00000116563 Gm56451 ENSMUST00000231720 ENSMUSP00000156010 TRANSLATION protein_coding - - - 59.0 0.0 0.6 1.0 0.0 0.0 -4,-6 0.6823 2 6.0 PRINCIPAL:1 ENSMUSG00000075144 Or5l13 ENSMUST00000216191 ENSMUSP00000151183 TRANSLATION protein_coding - CCDS38176.1 5 323.0 0.0 1.0 0.0 158.4 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075144 Or5l13 ENSMUST00000099842 ENSMUSP00000097430 TRANSLATION protein_coding - CCDS38176.1 - 323.0 0.0 1.0 0.0 158.4 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075144 Or5l13 ENSMUST00000216726 ENSMUSP00000149665 TRANSLATION protein_coding - CCDS38176.1 5 323.0 0.0 1.0 0.0 158.4 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043274 Or10ag2 ENSMUST00000216208 ENSMUSP00000154459 TRANSLATION protein_coding - - 2 321.0 0.0 1.0 0.0 173.8 7.0 -4,-7 0.2456 - 8.0 ALTERNATIVE:2 ENSMUSG00000043274 Or10ag2 ENSMUST00000214663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043274 Or10ag2 ENSMUST00000054974 ENSMUSP00000058786 TRANSLATION protein_coding - CCDS16290.1 - 323.0 0.0 1.0 3.5 173.8 7.0 -4,-7 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000074623 Gm826 ENSMUST00000138905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074623 Gm826 ENSMUST00000109475 ENSMUSP00000105101 TRANSLATION protein_coding - - 2 86.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0413 - 0.0 ALTERNATIVE:2 ENSMUSG00000074623 Gm826 ENSMUST00000099127 ENSMUSP00000096729 TRANSLATION protein_coding - CCDS50789.1 1 109.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.8446 - 0.0 PRINCIPAL:2 ENSMUSG00000118578 1700014B07Rik ENSMUST00000238876 ENSMUSP00000158902 TRANSLATION protein_coding - - - 146.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.5859 - 0.0 PRINCIPAL:1 ENSMUSG00000042851 Zc3h6 ENSMUST00000110319 ENSMUSP00000105948 TRANSLATION protein_coding - - 1 151.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000042851 Zc3h6 ENSMUST00000110320 ENSMUSP00000105949 TRANSLATION protein_coding - CCDS50707.1 2 1177.0 12.0 2.4 0.4 45.3 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000098950 Gm28036 ENSMUST00000184899 ENSMUSP00000139177 TRANSLATION nonsense_mediated_decay,RT - - 3 69.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000098950 Gm28036 ENSMUST00000160165 ENSMUSP00000124858 TRANSLATION nonsense_mediated_decay,RT start - 5 68.0 0.0 0.85 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000098950 Gm28036 ENSMUST00000183518 ENSMUSP00000139010 TRANSLATION protein_coding,RT stop - 3 54.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000098950 Gm28036 ENSMUST00000127956 ENSMUSP00000114923 TRANSLATION nonsense_mediated_decay,RT start - 2 570.0 0.0 2.5 0.0 55.4 0.0 -4,-6 0.0316 - -2.0 ALTERNATIVE:2 ENSMUSG00000098950 Gm28036 ENSMUST00000132494 ENSMUSP00000139175 TRANSLATION nonsense_mediated_decay,RT - - 2 658.0 0.0 3.3 0.0 55.4 0.0 -4,-7 0.7724 - -2.0 PRINCIPAL:5 ENSMUSG00000098950 Gm28036 ENSMUST00000159952 ENSMUSP00000124101 TRANSLATION nonsense_mediated_decay,RT start - 5 174.0 0.0 2.9 0.0 0.0 0.0 -4,-6 0.0005 - -2.0 ALTERNATIVE:2 ENSMUSG00000098950 Gm28036 ENSMUST00000162612 ENSMUSP00000125190 TRANSLATION nonsense_mediated_decay,RT start - 5 164.0 0.0 2.9 0.0 0.0 0.0 -4,-6 0.0005 - -2.0 ALTERNATIVE:2 ENSMUSG00000098950 Gm28036 ENSMUST00000183972 ENSMUSP00000138995 TRANSLATION nonsense_mediated_decay,RT start - 3 48.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000052533 Nup188 ENSMUST00000138666 ENSMUSP00000122398 TRANSLATION protein_coding - - 1 119.0 0.0 3.08 0.0 43.8 0.0 -4,-2 0.0 1 0.0 MINOR ENSMUSG00000052533 Nup188 ENSMUST00000133603 - NO_TRANSLATION retained_intron ENSMUSG00000052533 Nup188 ENSMUST00000133421 - NO_TRANSLATION retained_intron ENSMUSG00000052533 Nup188 ENSMUST00000156023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052533 Nup188 ENSMUST00000148969 ENSMUSP00000121742 TRANSLATION nonsense_mediated_decay - - 5 118.0 0.0 3.08 0.0 41.2 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000052533 Nup188 ENSMUST00000064447 ENSMUSP00000065836 TRANSLATION protein_coding - CCDS15878.1 1 1759.0 0.0 18.785 3.2 697.1 0.0 -4,-2 1.0 31 13.0 PRINCIPAL:1 ENSMUSG00000052533 Nup188 ENSMUST00000113634 ENSMUSP00000109264 TRANSLATION protein_coding - - 2 155.0 0.0 3.58 0.0 52.9 0.0 -4,-2 0.0 1 0.0 MINOR ENSMUSG00000075148 Or5w17 ENSMUST00000099846 ENSMUSP00000097433 TRANSLATION protein_coding - CCDS16307.1 - 311.0 0.0 1.0 7.2 97.5 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000037843 Vstm2l ENSMUST00000109523 ENSMUSP00000105149 TRANSLATION protein_coding - CCDS50784.1 5 202.0 0.0 0.5 8.5 39.8 0.0 2,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000061295 Or4c126 ENSMUST00000216953 ENSMUSP00000150711 TRANSLATION protein_coding - CCDS16400.1 5 306.0 0.0 2.0 8.8 140.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061295 Or4c126 ENSMUST00000213909 ENSMUSP00000150341 TRANSLATION protein_coding - CCDS16400.1 2 306.0 0.0 2.0 8.8 140.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061295 Or4c126 ENSMUST00000077785 ENSMUSP00000076959 TRANSLATION protein_coding - CCDS16400.1 - 306.0 0.0 2.0 8.8 140.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061295 Or4c126 ENSMUST00000111509 ENSMUSP00000107134 TRANSLATION protein_coding stop - 2 133.0 0.0 1.0 0.0 71.9 2.0 -4,-6 0.0015 - -2.0 MINOR ENSMUSG00000017299 Dnttip1 ENSMUST00000017443 ENSMUSP00000017443 TRANSLATION protein_coding - CCDS17054.1 1 328.0 0.0 6.5 10.2 0.0 0.0 -4,-5 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000017299 Dnttip1 ENSMUST00000109326 ENSMUSP00000104949 TRANSLATION protein_coding - - 1 111.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0028 3 0.0 MINOR ENSMUSG00000017299 Dnttip1 ENSMUST00000109327 ENSMUSP00000104950 TRANSLATION protein_coding stop - 2 211.0 0.0 2.75 0.0 0.0 0.0 -4,-5 0.0045 4 -2.0 MINOR ENSMUSG00000017299 Dnttip1 ENSMUST00000135458 - NO_TRANSLATION retained_intron ENSMUSG00000027522 Stx16 ENSMUST00000134876 ENSMUSP00000123275 TRANSLATION protein_coding stop - 5 33.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027522 Stx16 ENSMUST00000087908 ENSMUSP00000085218 TRANSLATION protein_coding - CCDS17147.2 1 326.0 0.0 2.665 10.7 97.0 0.0 -4,0 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000027522 Stx16 ENSMUST00000147038 ENSMUSP00000120279 TRANSLATION protein_coding stop - 5 164.0 0.0 1.065 0.0 0.0 0.0 -4,-5 0.0003 3 -2.0 MINOR ENSMUSG00000027522 Stx16 ENSMUST00000155000 ENSMUSP00000119952 TRANSLATION protein_coding stop - 5 88.0 0.0 0.758 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027522 Stx16 ENSMUST00000156054 ENSMUSP00000116618 TRANSLATION protein_coding start/stop - 3 258.0 0.0 1.665 0.0 53.2 0.0 -4,-1 0.0004 6 -2.0 MINOR ENSMUSG00000026936 Lcn3 ENSMUST00000028304 ENSMUSP00000028304 TRANSLATION protein_coding - CCDS15790.1 1 187.0 0.0 4.08 0.0 76.6 0.0 3,-2 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000026936 Lcn3 ENSMUST00000239498 ENSMUSP00000159300 TRANSLATION protein_coding - - - 182.0 0.0 4.08 0.0 76.6 0.0 4,-1 0.1724 2 8.0 ALTERNATIVE:2 ENSMUSG00000015790 Surf1 ENSMUST00000167661 ENSMUSP00000128488 TRANSLATION nonsense_mediated_decay - - 2 59.0 0.0 0.0 0.0 0.0 0.0 -1,2 0.0007 - -2.0 MINOR ENSMUSG00000015790 Surf1 ENSMUST00000129682 ENSMUSP00000141918 TRANSLATION nonsense_mediated_decay - - 3 49.0 0.0 0.0 0.0 0.0 4.0 -4,-7 0.0041 - -2.0 MINOR ENSMUSG00000015790 Surf1 ENSMUST00000129822 ENSMUSP00000141305 TRANSLATION nonsense_mediated_decay start - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0007 - -2.0 MINOR ENSMUSG00000015790 Surf1 ENSMUST00000133513 ENSMUSP00000141317 TRANSLATION protein_coding stop - 3 63.0 0.0 0.0 0.0 35.0 3.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000015790 Surf1 ENSMUST00000147110 ENSMUSP00000141238 TRANSLATION protein_coding stop - 5 240.0 0.0 0.0 0.0 138.7 3.0 -4,-7 0.0265 6 -2.0 MINOR ENSMUSG00000015790 Surf1 ENSMUST00000150776 - NO_TRANSLATION retained_intron ENSMUSG00000015790 Surf1 ENSMUST00000183520 ENSMUSP00000139112 TRANSLATION nonsense_mediated_decay start - 5 248.0 0.0 0.0 0.0 130.9 3.0 -4,0 0.0088 5 -2.0 MINOR ENSMUSG00000015790 Surf1 ENSMUST00000015934 ENSMUSP00000015934 TRANSLATION protein_coding - CCDS50543.1 1 306.0 0.0 0.0 1.4 153.0 4.0 -4,0 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000015790 Surf1 ENSMUST00000142967 - NO_TRANSLATION retained_intron ENSMUSG00000015790 Surf1 ENSMUST00000128665 - NO_TRANSLATION retained_intron ENSMUSG00000027263 Tubgcp4 ENSMUST00000143320 - NO_TRANSLATION retained_intron ENSMUSG00000027263 Tubgcp4 ENSMUST00000133773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027263 Tubgcp4 ENSMUST00000154633 - NO_TRANSLATION retained_intron ENSMUSG00000027263 Tubgcp4 ENSMUST00000154318 - NO_TRANSLATION retained_intron ENSMUSG00000027263 Tubgcp4 ENSMUST00000039541 ENSMUSP00000044049 TRANSLATION protein_coding - CCDS16637.1 1 667.0 0.0 9.88 26.2 364.3 0.0 -4,-6 0.9654 9 9.576 ALTERNATIVE:1 ENSMUSG00000027263 Tubgcp4 ENSMUST00000130929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027263 Tubgcp4 ENSMUST00000138601 - NO_TRANSLATION retained_intron ENSMUSG00000027263 Tubgcp4 ENSMUST00000110658 ENSMUSP00000106286 TRANSLATION protein_coding - CCDS71124.1 1 666.0 0.0 9.88 29.2 365.0 0.0 -4,-6 1.0 9 10.0 PRINCIPAL:4 ENSMUSG00000027263 Tubgcp4 ENSMUST00000144123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027263 Tubgcp4 ENSMUST00000135555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027263 Tubgcp4 ENSMUST00000110657 ENSMUSP00000106285 TRANSLATION protein_coding - - 1 620.0 0.0 7.88 0.0 365.0 0.0 -4,-6 0.0224 8 1.998 MINOR ENSMUSG00000027263 Tubgcp4 ENSMUST00000144076 - NO_TRANSLATION retained_intron ENSMUSG00000027263 Tubgcp4 ENSMUST00000143305 - NO_TRANSLATION retained_intron ENSMUSG00000027263 Tubgcp4 ENSMUST00000126817 - NO_TRANSLATION retained_intron ENSMUSG00000027263 Tubgcp4 ENSMUST00000186659 ENSMUSP00000140417 TRANSLATION protein_coding - CCDS71124.1 1 666.0 0.0 9.88 29.2 365.0 0.0 -4,-6 1.0 9 10.0 PRINCIPAL:4 ENSMUSG00000075318 Scn2a ENSMUST00000200829 ENSMUSP00000143882 TRANSLATION protein_coding - CCDS84529.1 5 2006.0 0.0 19.0 19.1 1361.5 12.0 -4,-7 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000075318 Scn2a ENSMUST00000202508 ENSMUSP00000143958 TRANSLATION nonsense_mediated_decay start - 1 106.0 0.0 0.4 0.0 70.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000075318 Scn2a ENSMUST00000028377 ENSMUSP00000028377 TRANSLATION protein_coding - CCDS38130.1 5 2006.0 0.0 18.0 19.1 1357.4 12.0 -4,-7 0.9635 19 13.756 MINOR ENSMUSG00000075318 Scn2a ENSMUST00000202162 ENSMUSP00000143888 TRANSLATION nonsense_mediated_decay start - 5 99.0 0.0 0.4 0.0 67.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000075318 Scn2a ENSMUST00000144254 ENSMUSP00000117955 TRANSLATION protein_coding stop - 5 504.0 0.0 7.7 0.0 275.3 7.0 -4,-7 0.0022 5 -2.0 MINOR ENSMUSG00000075318 Scn2a ENSMUST00000239325 ENSMUSP00000159244 TRANSLATION nonsense_mediated_decay start - - 470.0 0.0 2.75 0.0 383.5 3.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000075318 Scn2a ENSMUST00000138368 - NO_TRANSLATION retained_intron ENSMUSG00000075318 Scn2a ENSMUST00000201378 - NO_TRANSLATION retained_intron ENSMUSG00000075318 Scn2a ENSMUST00000202653 - NO_TRANSLATION retained_intron ENSMUSG00000075318 Scn2a ENSMUST00000100067 ENSMUSP00000097645 TRANSLATION protein_coding - CCDS38130.1 5 2006.0 0.0 18.0 19.1 1357.4 12.0 -4,-7 0.9635 19 13.756 MINOR ENSMUSG00000047969 Or5t5 ENSMUST00000055273 ENSMUSP00000049733 TRANSLATION protein_coding - CCDS16268.1 - 322.0 0.0 1.0 6.2 166.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047969 Or5t5 ENSMUST00000213354 ENSMUSP00000149944 TRANSLATION protein_coding - CCDS16268.1 3 322.0 0.0 1.0 6.2 166.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047969 Or5t5 ENSMUST00000219561 ENSMUSP00000151453 TRANSLATION protein_coding - CCDS16268.1 5 322.0 0.0 1.0 6.2 166.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040133 Gpr176 ENSMUST00000039160 ENSMUSP00000037586 TRANSLATION protein_coding - CCDS16575.1 1 515.0 0.0 0.732 10.3 101.9 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000074916 Chst14 ENSMUST00000099546 ENSMUSP00000099579 TRANSLATION protein_coding - CCDS16587.1 - 376.0 0.0 2.25 9.1 182.5 1.0 -4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000074916 Chst14 ENSMUST00000110837 ENSMUSP00000106461 TRANSLATION protein_coding - - 1 351.0 0.0 1.5 0.0 142.7 1.0 -4,-1 0.0008 3 7.614 MINOR ENSMUSG00000115074 Ndor1 ENSMUST00000228052 ENSMUSP00000154261 TRANSLATION protein_coding,RT - - - 662.0 17.0 7.18 0.0 235.5 0.0 -4,-2 0.721 - -2.0 PRINCIPAL:1 ENSMUSG00000041911 Dlx1 ENSMUST00000152711 ENSMUSP00000133288 TRANSLATION protein_coding stop - 3 79.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041911 Dlx1 ENSMUST00000145088 - NO_TRANSLATION retained_intron ENSMUSG00000041911 Dlx1 ENSMUST00000145444 ENSMUSP00000134713 TRANSLATION nonsense_mediated_decay - - 5 110.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041911 Dlx1 ENSMUST00000172629 - NO_TRANSLATION retained_intron ENSMUSG00000041911 Dlx1 ENSMUST00000037119 ENSMUSP00000042413 TRANSLATION protein_coding - CCDS16116.1 1 255.0 0.0 2.08 30.7 72.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000041911 Dlx1 ENSMUST00000126400 ENSMUSP00000133592 TRANSLATION protein_coding stop - 3 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027434 Nkx2-2 ENSMUST00000172627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027434 Nkx2-2 ENSMUST00000109970 ENSMUSP00000105596 TRANSLATION protein_coding - CCDS38259.1 1 248.0 0.0 1.0 0.0 68.9 0.0 -4,-5 0.0826 1 10.998 MINOR ENSMUSG00000027434 Nkx2-2 ENSMUST00000067075 ENSMUSP00000069666 TRANSLATION protein_coding - CCDS16834.1 1 273.0 0.0 1.2 25.8 68.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027434 Nkx2-2 ENSMUST00000109969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095156 Or4k37 ENSMUST00000208176 ENSMUSP00000151304 TRANSLATION protein_coding - CCDS16521.1 2 305.0 0.0 1.0 9.0 162.4 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095156 Or4k37 ENSMUST00000090326 ENSMUSP00000087798 TRANSLATION protein_coding - CCDS16521.1 - 305.0 0.0 1.0 9.0 162.4 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034800 Zfp661 ENSMUST00000110368 ENSMUSP00000105997 TRANSLATION protein_coding - CCDS16705.1 1 427.0 35.0 1.0 0.0 278.5 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034800 Zfp661 ENSMUST00000164551 ENSMUSP00000132820 TRANSLATION protein_coding - CCDS16705.1 2 427.0 35.0 1.0 0.0 278.5 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034800 Zfp661 ENSMUST00000110366 ENSMUSP00000105995 TRANSLATION protein_coding - CCDS16705.1 1 427.0 35.0 1.0 0.0 278.5 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034800 Zfp661 ENSMUST00000077422 ENSMUSP00000076637 TRANSLATION protein_coding - CCDS16705.1 1 427.0 35.0 1.0 0.0 278.5 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000037523 Mavs ENSMUST00000132694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037523 Mavs ENSMUST00000130597 ENSMUSP00000138401 TRANSLATION nonsense_mediated_decay - - 1 69.0 0.0 1.066 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037523 Mavs ENSMUST00000041362 ENSMUSP00000038339 TRANSLATION protein_coding - CCDS16760.1 1 503.0 0.0 2.0 0.1 67.9 1.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000037523 Mavs ENSMUST00000110199 ENSMUSP00000105828 TRANSLATION protein_coding - CCDS16760.1 1 503.0 0.0 2.0 0.1 67.9 1.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000026648 Dclre1c ENSMUST00000132565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026648 Dclre1c ENSMUST00000115066 ENSMUSP00000110718 TRANSLATION protein_coding - CCDS79728.1 1 473.0 0.0 6.08 0.0 73.0 0.0 -4,0 0.1426 - 2.0 MINOR ENSMUSG00000026648 Dclre1c ENSMUST00000100463 ENSMUSP00000098031 TRANSLATION protein_coding - CCDS50486.1 1 486.0 6.0 10.33 0.0 73.0 0.0 -4,-5 0.1887 - 14.0 ALTERNATIVE:2 ENSMUSG00000026648 Dclre1c ENSMUST00000152468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026648 Dclre1c ENSMUST00000146027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026648 Dclre1c ENSMUST00000061852 ENSMUSP00000054300 TRANSLATION protein_coding - CCDS15649.1 1 603.0 6.0 10.33 0.0 73.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000026648 Dclre1c ENSMUST00000102988 ENSMUSP00000100053 TRANSLATION protein_coding - CCDS15650.1 1 705.0 6.0 10.33 0.0 73.0 0.0 -4,-5 0.2202 - 14.0 ALTERNATIVE:2 ENSMUSG00000026648 Dclre1c ENSMUST00000129657 ENSMUSP00000116883 TRANSLATION protein_coding start/stop - 5 227.0 0.0 3.33 0.0 65.0 0.0 -4,-5 0.0026 - -2.0 MINOR ENSMUSG00000026648 Dclre1c ENSMUST00000131433 - NO_TRANSLATION retained_intron ENSMUSG00000061525 4921509C19Rik ENSMUST00000080132 ENSMUSP00000079030 TRANSLATION protein_coding - CCDS38271.1 1 640.0 17.0 0.4 0.0 232.4 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000026896 Ifih1 ENSMUST00000028259 ENSMUSP00000028259 TRANSLATION protein_coding - CCDS16068.1 1 1025.0 13.0 11.12 2.7 394.7 0.0 -4,-6 1.0 20 15.0 PRINCIPAL:2 ENSMUSG00000026896 Ifih1 ENSMUST00000175964 - NO_TRANSLATION retained_intron ENSMUSG00000026896 Ifih1 ENSMUST00000112459 ENSMUSP00000108078 TRANSLATION protein_coding - CCDS50594.1 1 976.0 13.0 11.12 0.0 394.7 0.0 -4,-6 0.3043 20 14.0 ALTERNATIVE:2 ENSMUSG00000026896 Ifih1 ENSMUST00000176431 - NO_TRANSLATION retained_intron ENSMUSG00000026896 Ifih1 ENSMUST00000176388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026727 Rsu1 ENSMUST00000161912 - NO_TRANSLATION retained_intron ENSMUSG00000026727 Rsu1 ENSMUST00000137670 ENSMUSP00000117460 TRANSLATION protein_coding stop - 3 112.0 0.0 2.9125 0.0 35.8 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000026727 Rsu1 ENSMUST00000134551 ENSMUSP00000125338 TRANSLATION nonsense_mediated_decay - - 3 56.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000026727 Rsu1 ENSMUST00000131226 - NO_TRANSLATION retained_intron ENSMUSG00000026727 Rsu1 ENSMUST00000028059 ENSMUSP00000028059 TRANSLATION protein_coding - CCDS15693.1 1 277.0 0.0 7.33 35.7 68.2 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000026727 Rsu1 ENSMUST00000162223 - NO_TRANSLATION retained_intron ENSMUSG00000026727 Rsu1 ENSMUST00000195538 - NO_TRANSLATION retained_intron ENSMUSG00000026727 Rsu1 ENSMUST00000191959 ENSMUSP00000141763 TRANSLATION protein_coding - - 3 64.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000026727 Rsu1 ENSMUST00000114791 ENSMUSP00000110439 TRANSLATION protein_coding - - 5 260.0 0.0 6.83 4.3 37.4 0.0 -4,-5 0.111 7 8.666 MINOR ENSMUSG00000026727 Rsu1 ENSMUST00000129257 - NO_TRANSLATION retained_intron ENSMUSG00000055632 Hmcn2 ENSMUST00000226996 ENSMUSP00000154649 TRANSLATION nonsense_mediated_decay - - - 1449.0 5.0 12.355 0.0 469.5 0.0 3,-2 0.0386 14 -2.0 MINOR ENSMUSG00000055632 Hmcn2 ENSMUST00000113532 ENSMUSP00000109160 TRANSLATION protein_coding - - 5 5100.0 5.0 49.76 0.0 2399.1 0.0 3,-2 1.0 65 17.0 PRINCIPAL:1 ENSMUSG00000055632 Hmcn2 ENSMUST00000141294 - NO_TRANSLATION retained_intron ENSMUSG00000055632 Hmcn2 ENSMUST00000138821 - NO_TRANSLATION retained_intron ENSMUSG00000055632 Hmcn2 ENSMUST00000130375 ENSMUSP00000118076 TRANSLATION protein_coding start/stop - 5 236.0 0.0 2.962 0.0 107.2 0.0 -3,-6 0.0 2 -2.0 MINOR ENSMUSG00000055632 Hmcn2 ENSMUST00000142448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027424 Mgme1 ENSMUST00000110027 ENSMUSP00000105654 TRANSLATION protein_coding - CCDS16816.1 1 338.0 0.0 3.1 5.1 0.0 0.0 -4,0 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000027424 Mgme1 ENSMUST00000110028 ENSMUSP00000105655 TRANSLATION protein_coding - CCDS16816.1 1 338.0 0.0 3.1 5.1 0.0 0.0 -4,0 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000027424 Mgme1 ENSMUST00000028910 ENSMUSP00000028910 TRANSLATION protein_coding - CCDS16816.1 1 338.0 0.0 3.1 5.1 0.0 0.0 -4,0 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000027120 Fshb ENSMUST00000028533 ENSMUSP00000028533 TRANSLATION protein_coding - CCDS16504.1 1 130.0 0.0 2.0 16.5 120.5 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000053146 Or1j20 ENSMUST00000217325 ENSMUSP00000149568 TRANSLATION protein_coding - CCDS15985.1 5 315.0 0.0 1.0 2.1 190.4 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000053146 Or1j20 ENSMUST00000065416 ENSMUSP00000070758 TRANSLATION protein_coding - CCDS15985.1 - 315.0 0.0 1.0 2.1 190.4 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000005973 Rcn1 ENSMUST00000127019 - NO_TRANSLATION retained_intron ENSMUSG00000005973 Rcn1 ENSMUST00000006128 ENSMUSP00000006128 TRANSLATION protein_coding - CCDS16498.1 1 325.0 24.0 5.35 3.5 43.6 0.0 4,-3 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000075105 Or4c113 ENSMUST00000215054 ENSMUSP00000149671 TRANSLATION protein_coding - CCDS16363.1 5 311.0 0.0 1.0 4.3 154.4 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075105 Or4c113 ENSMUST00000099798 ENSMUSP00000097386 TRANSLATION protein_coding - CCDS16363.1 - 311.0 0.0 1.0 4.3 154.4 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075105 Or4c113 ENSMUST00000213609 ENSMUSP00000149558 TRANSLATION protein_coding - CCDS16363.1 5 311.0 0.0 1.0 4.3 154.4 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075105 Or4c113 ENSMUST00000215048 ENSMUSP00000149171 TRANSLATION protein_coding - CCDS16363.1 5 311.0 0.0 1.0 4.3 154.4 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000045392 Or5m3b ENSMUST00000215682 ENSMUSP00000148948 TRANSLATION protein_coding - CCDS16234.1 1 310.0 0.0 2.0 11.0 170.0 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045392 Or5m3b ENSMUST00000213774 ENSMUSP00000150625 TRANSLATION protein_coding stop - 3 38.0 0.0 1.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000045392 Or5m3b ENSMUST00000214546 ENSMUSP00000149818 TRANSLATION protein_coding - CCDS16234.1 1 310.0 0.0 2.0 11.0 170.0 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045392 Or5m3b ENSMUST00000213865 ENSMUSP00000149202 TRANSLATION protein_coding - CCDS16234.1 5 310.0 0.0 2.0 11.0 170.0 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045392 Or5m3b ENSMUST00000218397 ENSMUSP00000151539 TRANSLATION protein_coding - CCDS16234.1 5 310.0 0.0 2.0 11.0 170.0 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000014355 Anapc1 ENSMUST00000154995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014355 Anapc1 ENSMUST00000124418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014355 Anapc1 ENSMUST00000145906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014355 Anapc1 ENSMUST00000143007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014355 Anapc1 ENSMUST00000110333 ENSMUSP00000105962 TRANSLATION protein_coding - - 1 1213.0 0.0 10.5875 0.0 0.0 0.0 -4,-5 0.0129 30 0.0 MINOR ENSMUSG00000014355 Anapc1 ENSMUST00000110332 ENSMUSP00000105961 TRANSLATION protein_coding - - 1 80.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0004 2 0.0 MINOR ENSMUSG00000014355 Anapc1 ENSMUST00000123503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014355 Anapc1 ENSMUST00000014499 ENSMUSP00000014499 TRANSLATION protein_coding - CCDS16715.1 1 1944.0 0.0 25.275 12.0 21.2 0.0 -4,-5 1.0 41 15.0 PRINCIPAL:1 ENSMUSG00000014355 Anapc1 ENSMUST00000134485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014355 Anapc1 ENSMUST00000154320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014355 Anapc1 ENSMUST00000151171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074673 Ttll9 ENSMUST00000146626 ENSMUSP00000121434 TRANSLATION nonsense_mediated_decay - - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000074673 Ttll9 ENSMUST00000103155 ENSMUSP00000099444 TRANSLATION protein_coding - CCDS16903.1 1 464.0 24.0 3.845 0.0 287.1 0.0 -4,-6 0.2624 - 18.0 MINOR ENSMUSG00000074673 Ttll9 ENSMUST00000155631 ENSMUSP00000114786 TRANSLATION protein_coding stop - 3 139.0 4.0 1.275 0.0 46.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000074673 Ttll9 ENSMUST00000151641 - NO_TRANSLATION retained_intron ENSMUSG00000074673 Ttll9 ENSMUST00000152158 ENSMUSP00000122494 TRANSLATION nonsense_mediated_decay - - 1 126.0 0.0 0.65 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000074673 Ttll9 ENSMUST00000109801 ENSMUSP00000105426 TRANSLATION nonsense_mediated_decay - - 5 234.0 16.0 2.375 0.0 125.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000074673 Ttll9 ENSMUST00000150218 - NO_TRANSLATION retained_intron ENSMUSG00000074673 Ttll9 ENSMUST00000165343 ENSMUSP00000131839 TRANSLATION nonsense_mediated_decay start - 5 73.0 0.0 0.25 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000074673 Ttll9 ENSMUST00000099197 ENSMUSP00000096803 TRANSLATION protein_coding - CCDS38283.1 1 461.0 24.0 3.845 6.2 287.1 0.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000075176 Or8k38 ENSMUST00000214566 ENSMUSP00000150955 TRANSLATION protein_coding - CCDS16263.1 5 313.0 0.0 1.0 12.5 165.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075176 Or8k38 ENSMUST00000099879 ENSMUSP00000097464 TRANSLATION protein_coding - CCDS16263.1 - 313.0 0.0 1.0 12.5 165.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075176 Or8k38 ENSMUST00000213279 ENSMUSP00000150258 TRANSLATION protein_coding - CCDS16263.1 5 313.0 0.0 1.0 12.5 165.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000017858 Ift52 ENSMUST00000150396 ENSMUSP00000121943 TRANSLATION protein_coding stop - 5 234.0 0.0 4.9375 0.0 0.0 0.0 -4,-5 0.0117 4 -2.0 MINOR ENSMUSG00000017858 Ift52 ENSMUST00000152201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017858 Ift52 ENSMUST00000125144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017858 Ift52 ENSMUST00000018002 ENSMUSP00000018002 TRANSLATION protein_coding - CCDS17005.1 1 426.0 0.0 7.5375 0.4 0.0 0.0 -4,-5 0.9893 8 6.0 PRINCIPAL:1 ENSMUSG00000075165 Or5be3 ENSMUST00000099868 ENSMUSP00000097453 TRANSLATION protein_coding - CCDS16277.1 - 312.0 0.0 1.0 14.5 159.0 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075165 Or5be3 ENSMUST00000215978 ENSMUSP00000149148 TRANSLATION protein_coding - CCDS16277.1 3 312.0 0.0 1.0 14.5 159.0 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039849 Pcif1 ENSMUST00000041643 ENSMUSP00000039555 TRANSLATION protein_coding - CCDS17064.1 1 706.0 0.0 11.1 12.7 275.7 0.0 -4,-7 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000039849 Pcif1 ENSMUST00000130213 - NO_TRANSLATION retained_intron ENSMUSG00000039849 Pcif1 ENSMUST00000122810 - NO_TRANSLATION retained_intron ENSMUSG00000039849 Pcif1 ENSMUST00000145327 - NO_TRANSLATION retained_intron ENSMUSG00000067818 Myl9 ENSMUST00000088552 ENSMUSP00000085913 TRANSLATION protein_coding - CCDS50779.1 1 172.0 6.0 3.0 36.9 49.2 0.0 -4,-2 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000067818 Myl9 ENSMUST00000145299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067818 Myl9 ENSMUST00000132985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067818 Myl9 ENSMUST00000131622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026822 Lcn2 ENSMUST00000192241 ENSMUSP00000141430 TRANSLATION protein_coding stop - 5 271.0 0.0 4.3 0.0 78.3 0.0 -4,-2 0.0035 4 -2.0 MINOR ENSMUSG00000026822 Lcn2 ENSMUST00000144569 - NO_TRANSLATION retained_intron ENSMUSG00000026822 Lcn2 ENSMUST00000147219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026822 Lcn2 ENSMUST00000155830 - NO_TRANSLATION retained_intron ENSMUSG00000026822 Lcn2 ENSMUST00000136509 - NO_TRANSLATION retained_intron ENSMUSG00000026822 Lcn2 ENSMUST00000050785 ENSMUSP00000053962 TRANSLATION protein_coding - CCDS15913.1 1 200.0 0.0 4.63 3.7 88.4 0.0 3,-1 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000026959 Grin1 ENSMUST00000144402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026959 Grin1 ENSMUST00000114317 ENSMUSP00000109956 TRANSLATION protein_coding - CCDS50529.1 1 906.0 12.0 16.925 22.5 410.2 7.0 3,-2 0.9389 19 17.512 ALTERNATIVE:1 ENSMUSG00000026959 Grin1 ENSMUST00000028335 ENSMUSP00000028335 TRANSLATION protein_coding - CCDS15764.1 1 938.0 12.0 16.85 7.1 417.1 7.0 3,-2 0.5431 21 14.846 MINOR ENSMUSG00000026959 Grin1 ENSMUST00000114312 ENSMUSP00000109951 TRANSLATION protein_coding - CCDS50528.1 1 885.0 12.0 16.85 25.5 417.1 7.0 3,-2 1.0 19 17.85 PRINCIPAL:4 ENSMUSG00000026959 Grin1 ENSMUST00000114310 ENSMUSP00000109949 TRANSLATION protein_coding - - 5 959.0 12.0 16.925 7.1 410.2 7.0 3,-2 0.3262 21 14.996 MINOR ENSMUSG00000026959 Grin1 ENSMUST00000114307 ENSMUSP00000109946 TRANSLATION protein_coding - - 5 901.0 12.0 16.85 6.0 417.1 7.0 3,-2 0.4537 20 14.666 MINOR ENSMUSG00000026959 Grin1 ENSMUST00000135426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026959 Grin1 ENSMUST00000114308 ENSMUSP00000109947 TRANSLATION protein_coding - - 5 922.0 12.0 16.925 6.0 410.2 7.0 3,-2 0.3812 20 14.816 MINOR ENSMUSG00000026959 Grin1 ENSMUST00000114314 ENSMUSP00000109953 TRANSLATION protein_coding - - 5 922.0 12.0 16.85 14.3 417.1 7.0 3,-2 0.7423 20 16.022 MINOR ENSMUSG00000026959 Grin1 ENSMUST00000127171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026959 Grin1 ENSMUST00000153551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026959 Grin1 ENSMUST00000155627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026959 Grin1 ENSMUST00000114318 ENSMUSP00000109957 TRANSLATION protein_coding - - 5 943.0 12.0 16.925 14.3 410.2 7.0 3,-2 0.6438 20 16.172 MINOR ENSMUSG00000026959 Grin1 ENSMUST00000153465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044641 Pard6b ENSMUST00000052125 ENSMUSP00000052619 TRANSLATION protein_coding - CCDS17108.1 1 371.0 0.0 2.1 11.3 101.2 0.0 -4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000033943 Mga ENSMUST00000141776 - NO_TRANSLATION retained_intron ENSMUSG00000033943 Mga ENSMUST00000122889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033943 Mga ENSMUST00000131396 - NO_TRANSLATION retained_intron ENSMUSG00000033943 Mga ENSMUST00000150742 - NO_TRANSLATION retained_intron ENSMUSG00000033943 Mga ENSMUST00000152148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033943 Mga ENSMUST00000046717 ENSMUSP00000043795 TRANSLATION protein_coding - - 5 3003.0 0.0 1.6 0.0 337.8 0.0 -4,-5 1.0 23 8.0 PRINCIPAL:4 ENSMUSG00000033943 Mga ENSMUST00000156074 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033943 Mga ENSMUST00000110773 ENSMUSP00000106400 TRANSLATION protein_coding - - 5 2924.0 0.0 1.6 0.0 337.8 0.0 -4,-5 0.5288 22 8.0 ALTERNATIVE:2 ENSMUSG00000033943 Mga ENSMUST00000079934 ENSMUSP00000078853 TRANSLATION protein_coding - CCDS50675.1 5 2833.0 0.0 1.6 0.0 337.8 0.0 -4,-5 0.8744 22 8.0 ALTERNATIVE:2 ENSMUSG00000033943 Mga ENSMUST00000132054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033943 Mga ENSMUST00000151074 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033943 Mga ENSMUST00000129405 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033943 Mga ENSMUST00000156510 ENSMUSP00000119044 TRANSLATION protein_coding stop - 1 2295.0 0.0 1.6 0.0 337.8 0.0 -4,-5 0.4927 16 -2.0 MINOR ENSMUSG00000033943 Mga ENSMUST00000110774 ENSMUSP00000106401 TRANSLATION protein_coding - CCDS38208.1 5 3042.0 0.0 1.6 0.0 337.8 0.0 -4,-5 0.9835 23 8.0 ALTERNATIVE:2 ENSMUSG00000033943 Mga ENSMUST00000138851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074570 Cass4 ENSMUST00000109136 ENSMUSP00000104764 TRANSLATION protein_coding - CCDS38347.1 1 804.0 0.0 1.35 0.1 402.2 0.0 -4,-7 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000074570 Cass4 ENSMUST00000228775 ENSMUSP00000154073 TRANSLATION protein_coding - - - 780.0 0.0 1.35 0.0 397.0 0.0 -4,-7 0.1081 5 8.0 ALTERNATIVE:2 ENSMUSG00000074570 Cass4 ENSMUST00000099061 ENSMUSP00000096660 TRANSLATION protein_coding - - 1 685.0 0.0 0.85 0.0 229.8 0.0 -4,-7 0.0022 4 5.78 MINOR ENSMUSG00000074570 Cass4 ENSMUST00000103073 ENSMUSP00000099362 TRANSLATION protein_coding - CCDS71205.1 1 778.0 0.0 1.35 0.0 397.0 0.0 -4,-7 0.3478 5 8.0 ALTERNATIVE:2 ENSMUSG00000027425 Kat14 ENSMUST00000143318 - NO_TRANSLATION retained_intron ENSMUSG00000027425 Kat14 ENSMUST00000137611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027425 Kat14 ENSMUST00000131836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027425 Kat14 ENSMUST00000028911 ENSMUSP00000028911 TRANSLATION protein_coding - CCDS16819.1 1 779.0 26.0 1.964 17.6 38.6 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000027425 Kat14 ENSMUST00000156410 ENSMUSP00000127214 TRANSLATION nonsense_mediated_decay start - 3 97.0 4.0 0.68 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027425 Kat14 ENSMUST00000171261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027425 Kat14 ENSMUST00000139812 ENSMUSP00000128694 TRANSLATION protein_coding start - 3 92.0 22.0 0.764 0.0 38.2 0.0 -4,-7 0.0115 - -2.0 MINOR ENSMUSG00000027425 Kat14 ENSMUST00000148500 - NO_TRANSLATION retained_intron ENSMUSG00000027425 Kat14 ENSMUST00000147747 ENSMUSP00000130785 TRANSLATION protein_coding - - 1 568.0 22.0 0.764 0.1 38.6 0.0 -4,-5 0.0549 3 11.67 MINOR ENSMUSG00000027425 Kat14 ENSMUST00000125398 ENSMUSP00000129716 TRANSLATION protein_coding start - 3 83.0 12.0 0.5 0.0 30.1 0.0 -4,-7 0.0008 - -2.0 MINOR ENSMUSG00000027425 Kat14 ENSMUST00000130654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017720 Trp53tg5 ENSMUST00000017864 ENSMUSP00000017864 TRANSLATION protein_coding - CCDS71189.1 1 238.0 0.0 1.3 0.3 315.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027259 Adal ENSMUST00000110665 ENSMUSP00000106293 TRANSLATION protein_coding - CCDS79836.1 1 253.0 3.0 3.75 0.0 59.2 0.0 -4,-5 0.0019 3 5.358 MINOR ENSMUSG00000027259 Adal ENSMUST00000119031 ENSMUSP00000113052 TRANSLATION protein_coding - CCDS16633.1 5 360.0 5.0 8.45 0.1 119.9 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000027259 Adal ENSMUST00000152164 - NO_TRANSLATION retained_intron ENSMUSG00000027259 Adal ENSMUST00000156132 - NO_TRANSLATION retained_intron ENSMUSG00000027259 Adal ENSMUST00000147271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027259 Adal ENSMUST00000028702 ENSMUSP00000028702 TRANSLATION protein_coding - CCDS71121.1 1 293.0 3.0 7.0 0.0 96.8 0.0 -4,-5 0.0127 4 10.716 MINOR ENSMUSG00000027259 Adal ENSMUST00000066155 ENSMUSP00000067133 TRANSLATION protein_coding - CCDS16633.1 1 360.0 5.0 8.45 0.1 119.9 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000027259 Adal ENSMUST00000146750 - NO_TRANSLATION retained_intron ENSMUSG00000027259 Adal ENSMUST00000130221 - NO_TRANSLATION retained_intron ENSMUSG00000027259 Adal ENSMUST00000110662 ENSMUSP00000106290 TRANSLATION protein_coding - - 5 217.0 3.0 4.75 0.1 76.6 0.0 -4,-5 0.0 3 6.402 MINOR ENSMUSG00000056544 Defb21 ENSMUST00000070722 ENSMUSP00000065102 TRANSLATION protein_coding - CCDS16890.1 1 100.0 0.0 0.5 0.0 29.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026644 Acbd7 ENSMUST00000228935 ENSMUSP00000154392 TRANSLATION protein_coding - - - 89.0 12.0 2.5 36.9 93.5 0.0 -4,-5 0.797 6 18.0 ALTERNATIVE:1 ENSMUSG00000026644 Acbd7 ENSMUST00000115089 ENSMUSP00000110741 TRANSLATION protein_coding - CCDS50485.1 1 88.0 12.0 2.5 36.9 94.9 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:4 ENSMUSG00000017817 Jph2 ENSMUST00000109425 ENSMUSP00000105052 TRANSLATION protein_coding - CCDS17008.1 1 696.0 0.0 0.48 0.1 154.7 1.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000017817 Jph2 ENSMUST00000017961 ENSMUSP00000017961 TRANSLATION protein_coding - CCDS17008.1 1 696.0 0.0 0.48 0.1 154.7 1.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000043110 Lrrn4 ENSMUST00000049787 ENSMUSP00000057005 TRANSLATION protein_coding - CCDS16780.1 1 733.0 0.0 1.6 0.1 84.8 0.0 3,-2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000040152 Thbs1 ENSMUST00000039559 ENSMUSP00000044903 TRANSLATION protein_coding - CCDS38200.1 1 1171.0 117.0 16.0 13.6 767.8 0.0 1,-3 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000040152 Thbs1 ENSMUST00000142588 - NO_TRANSLATION retained_intron ENSMUSG00000002455 Prpf6 ENSMUST00000002529 ENSMUSP00000002529 TRANSLATION protein_coding - CCDS38381.1 1 941.0 0.0 17.78 13.6 228.8 0.0 -4,-2 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000002455 Prpf6 ENSMUST00000132714 ENSMUSP00000117711 TRANSLATION protein_coding stop - 2 54.0 0.0 1.0 0.0 54.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002455 Prpf6 ENSMUST00000139955 - NO_TRANSLATION retained_intron ENSMUSG00000002455 Prpf6 ENSMUST00000136481 ENSMUSP00000121340 TRANSLATION protein_coding - - 5 941.0 0.0 17.78 13.6 228.8 0.0 -4,-2 0.8582 23 16.0 PRINCIPAL:1 ENSMUSG00000078137 Ankrd63 ENSMUST00000104937 ENSMUSP00000100542 TRANSLATION protein_coding - CCDS38201.1 - 390.0 0.0 0.6 6.6 46.6 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000078876 Gm14408 ENSMUST00000249354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078876 Gm14408 ENSMUST00000126726 ENSMUSP00000119426 TRANSLATION protein_coding - - 5 92.0 0.0 2.0 0.0 70.5 0.0 -4,-5 0.0 - 7.656 MINOR ENSMUSG00000078876 Gm14408 ENSMUST00000122218 ENSMUSP00000113743 TRANSLATION protein_coding - - 5 139.0 7.0 3.5 0.0 90.9 0.0 -4,-5 0.7354 - 18.0 PRINCIPAL:1 ENSMUSG00000037754 Ppp1r16b ENSMUST00000045503 ENSMUSP00000039540 TRANSLATION protein_coding - CCDS16991.1 1 568.0 0.0 7.03 17.0 106.5 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000037754 Ppp1r16b ENSMUST00000145073 ENSMUSP00000117310 TRANSLATION protein_coding start - 5 468.0 0.0 5.95 0.0 62.4 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000037754 Ppp1r16b ENSMUST00000052927 ENSMUSP00000062615 TRANSLATION protein_coding - CCDS16991.1 1 568.0 0.0 7.03 17.0 106.5 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000037754 Ppp1r16b ENSMUST00000129902 - NO_TRANSLATION retained_intron ENSMUSG00000037754 Ppp1r16b ENSMUST00000103116 ENSMUSP00000099405 TRANSLATION protein_coding - CCDS16991.1 5 568.0 0.0 7.03 17.0 106.5 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000062997 Rpl35 ENSMUST00000152441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062997 Rpl35 ENSMUST00000126246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062997 Rpl35 ENSMUST00000080861 ENSMUSP00000079672 TRANSLATION protein_coding - CCDS16015.1 1 123.0 0.0 2.75 33.9 73.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000026934 Lhx3 ENSMUST00000149637 - NO_TRANSLATION retained_intron ENSMUSG00000026934 Lhx3 ENSMUST00000127035 - NO_TRANSLATION retained_intron ENSMUSG00000026934 Lhx3 ENSMUST00000054099 ENSMUSP00000056822 TRANSLATION protein_coding - CCDS71004.1 1 400.0 16.0 4.0 15.1 184.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000026934 Lhx3 ENSMUST00000028302 ENSMUSP00000028302 TRANSLATION protein_coding - CCDS38081.1 1 402.0 16.0 3.866 14.3 184.8 0.0 -4,-5 0.9783 - 17.502 ALTERNATIVE:1 ENSMUSG00000041997 Tlk1 ENSMUST00000133734 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041997 Tlk1 ENSMUST00000152738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041997 Tlk1 ENSMUST00000124629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041997 Tlk1 ENSMUST00000135128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041997 Tlk1 ENSMUST00000132542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041997 Tlk1 ENSMUST00000141707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041997 Tlk1 ENSMUST00000038584 ENSMUSP00000035961 TRANSLATION protein_coding - CCDS50599.1 1 766.0 19.0 3.338 11.3 207.8 0.0 -4,-2 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000050808 Muc15 ENSMUST00000090332 ENSMUSP00000087805 TRANSLATION protein_coding - CCDS16513.1 5 331.0 0.0 0.8 0.4 504.4 2.0 1,-4 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000050808 Muc15 ENSMUST00000111017 ENSMUSP00000106646 TRANSLATION protein_coding - CCDS71111.1 1 284.0 0.0 0.8 0.4 383.6 2.0 1,-4 0.2121 - 6.0 MINOR ENSMUSG00000050808 Muc15 ENSMUST00000111016 ENSMUSP00000106645 TRANSLATION protein_coding - CCDS16513.1 1 331.0 0.0 0.8 0.4 504.4 2.0 1,-4 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000048388 Fam171b ENSMUST00000051454 ENSMUSP00000062702 TRANSLATION protein_coding - CCDS16182.1 1 821.0 0.0 0.0 6.9 488.5 0.0 -1,-5 1.0 14 8.0 PRINCIPAL:1 ENSMUSG00000048388 Fam171b ENSMUST00000148184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074997 Pin1rt1 ENSMUST00000099659 ENSMUSP00000139143 TRANSLATION protein_coding - CCDS71110.1 1 159.0 7.0 1.0 28.6 54.6 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000098004 Gm27027 ENSMUST00000183110 ENSMUSP00000138281 TRANSLATION protein_coding,RT start - 3 97.0 11.0 1.0 0.0 0.0 0.0 -4,-5 0.6643 - -2.0 PRINCIPAL:1 ENSMUSG00000062098 Btbd3 ENSMUST00000155646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062098 Btbd3 ENSMUST00000075410 ENSMUSP00000074864 TRANSLATION protein_coding - CCDS16798.1 1 530.0 0.0 3.4 10.3 271.1 0.0 -4,-5 0.5553 2 13.328 MINOR ENSMUSG00000062098 Btbd3 ENSMUST00000128656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062098 Btbd3 ENSMUST00000091556 ENSMUSP00000089144 TRANSLATION protein_coding - CCDS16799.1 1 461.0 0.0 3.4 29.0 271.1 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000037014 Sstr4 ENSMUST00000109962 ENSMUSP00000105588 TRANSLATION protein_coding - CCDS38260.1 - 385.0 0.0 1.0 4.7 200.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000109449 Or4k36 ENSMUST00000219291 ENSMUSP00000151980 TRANSLATION protein_coding - CCDS16520.1 3 305.0 0.0 1.0 8.0 166.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109449 Or4k36 ENSMUST00000213551 ENSMUSP00000148875 TRANSLATION nonsense_mediated_decay - CCDS16520.1 5 305.0 0.0 1.0 8.0 166.1 6.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000109449 Or4k36 ENSMUST00000082167 ENSMUSP00000080805 TRANSLATION protein_coding - CCDS16520.1 - 305.0 0.0 1.0 8.0 166.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042863 Or5m13b ENSMUST00000219615 ENSMUSP00000151927 TRANSLATION protein_coding - CCDS16228.1 5 307.0 0.0 1.0 5.3 194.9 6.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042863 Or5m13b ENSMUST00000056718 ENSMUSP00000049887 TRANSLATION protein_coding - CCDS16228.1 - 307.0 0.0 1.0 5.3 194.9 6.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042863 Or5m13b ENSMUST00000217615 ENSMUSP00000150995 TRANSLATION protein_coding - CCDS16228.1 5 307.0 0.0 1.0 5.3 194.9 6.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075378 Or12k8 ENSMUST00000216663 ENSMUSP00000149770 TRANSLATION protein_coding - CCDS15993.1 5 322.0 0.0 1.0 0.4 151.0 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075378 Or12k8 ENSMUST00000100145 ENSMUSP00000097723 TRANSLATION protein_coding - CCDS15993.1 - 322.0 0.0 1.0 0.4 151.0 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075378 Or12k8 ENSMUST00000214969 ENSMUSP00000149234 TRANSLATION protein_coding - CCDS15993.1 5 322.0 0.0 1.0 0.4 151.0 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074731 Zfp345 ENSMUST00000109914 ENSMUSP00000105540 TRANSLATION protein_coding - CCDS50741.1 1 561.0 60.0 1.0 0.0 350.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000038467 Chmp4b ENSMUST00000136788 - NO_TRANSLATION retained_intron ENSMUSG00000038467 Chmp4b ENSMUST00000151668 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038467 Chmp4b ENSMUST00000044277 ENSMUSP00000036206 TRANSLATION protein_coding - CCDS16938.1 1 224.0 0.0 3.75 26.9 196.8 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000027367 Stard7 ENSMUST00000154549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027367 Stard7 ENSMUST00000110374 ENSMUSP00000106003 TRANSLATION protein_coding - - 1 122.0 0.0 0.9 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000027367 Stard7 ENSMUST00000135616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027367 Stard7 ENSMUST00000110375 ENSMUSP00000106004 TRANSLATION protein_coding - CCDS16698.2 1 373.0 0.0 5.0 5.8 65.1 0.0 -1,2 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000027367 Stard7 ENSMUST00000123152 - NO_TRANSLATION retained_intron ENSMUSG00000027367 Stard7 ENSMUST00000144687 - NO_TRANSLATION retained_intron ENSMUSG00000027367 Stard7 ENSMUST00000131196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027367 Stard7 ENSMUST00000125049 ENSMUSP00000116374 TRANSLATION protein_coding start - 2 409.0 0.0 5.0 0.0 59.7 0.0 -4,0 0.0341 7 -2.0 MINOR ENSMUSG00000050776 Or4f47 ENSMUST00000060098 ENSMUSP00000058587 TRANSLATION protein_coding - CCDS16546.1 - 316.0 0.0 1.0 3.9 136.1 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000050776 Or4f47 ENSMUST00000216988 ENSMUSP00000149091 TRANSLATION protein_coding - CCDS16546.1 5 316.0 0.0 1.0 3.9 136.1 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000050776 Or4f47 ENSMUST00000213693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050776 Or4f47 ENSMUST00000214801 ENSMUSP00000150073 TRANSLATION protein_coding - CCDS16546.1 5 316.0 0.0 1.0 3.9 136.1 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000026676 Ccdc3 ENSMUST00000027988 ENSMUSP00000027988 TRANSLATION protein_coding - CCDS15664.1 1 273.0 0.0 0.0 2.5 0.0 0.0 3,-1 0.992 1 1.0 PRINCIPAL:1 ENSMUSG00000027076 Timm10 ENSMUST00000028470 ENSMUSP00000028470 TRANSLATION protein_coding - CCDS38161.1 1 90.0 0.0 1.75 30.8 82.4 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000027076 Timm10 ENSMUST00000111631 ENSMUSP00000107258 TRANSLATION protein_coding - CCDS38161.1 3 90.0 0.0 1.75 30.8 82.4 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000039069 Mtg2 ENSMUST00000184862 ENSMUSP00000139273 TRANSLATION nonsense_mediated_decay - - 2 231.0 0.0 2.2 0.0 156.0 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000039069 Mtg2 ENSMUST00000136803 - NO_TRANSLATION retained_intron ENSMUSG00000039069 Mtg2 ENSMUST00000147264 - NO_TRANSLATION retained_intron ENSMUSG00000039069 Mtg2 ENSMUST00000146182 - NO_TRANSLATION retained_intron ENSMUSG00000039069 Mtg2 ENSMUST00000087563 ENSMUSP00000084843 TRANSLATION protein_coding - CCDS38374.1 5 405.0 14.0 3.8 9.4 240.0 0.0 -4,0 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000039069 Mtg2 ENSMUST00000108901 ENSMUSP00000104529 TRANSLATION protein_coding - CCDS38374.1 5 405.0 14.0 3.8 9.4 240.0 0.0 -4,0 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000039069 Mtg2 ENSMUST00000142608 - NO_TRANSLATION retained_intron ENSMUSG00000075143 Or5l14 ENSMUST00000099841 ENSMUSP00000097429 TRANSLATION protein_coding - CCDS16317.1 2 312.0 0.0 1.0 13.8 159.5 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027483 Bpifa1 ENSMUST00000144665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027483 Bpifa1 ENSMUST00000028985 ENSMUSP00000028985 TRANSLATION protein_coding - CCDS16925.1 1 278.0 0.0 5.2 1.3 139.3 0.0 3,-2 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000027483 Bpifa1 ENSMUST00000140006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032841 Prr5l ENSMUST00000144549 ENSMUSP00000116266 TRANSLATION protein_coding stop - 3 36.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0219 - -2.0 MINOR ENSMUSG00000032841 Prr5l ENSMUST00000141814 ENSMUSP00000118537 TRANSLATION protein_coding start/stop - 3 238.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.0109 3 -2.0 MINOR ENSMUSG00000032841 Prr5l ENSMUST00000171088 ENSMUSP00000130152 TRANSLATION protein_coding - CCDS38186.1 5 370.0 0.0 5.08 11.4 0.0 0.0 -4,0 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000032841 Prr5l ENSMUST00000125985 ENSMUSP00000122996 TRANSLATION protein_coding stop - 3 127.0 0.0 2.33 0.0 0.0 0.0 -4,0 0.0085 2 -2.0 MINOR ENSMUSG00000032841 Prr5l ENSMUST00000163762 ENSMUSP00000127530 TRANSLATION protein_coding - CCDS38186.1 5 370.0 0.0 5.08 11.4 0.0 0.0 -4,0 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000032841 Prr5l ENSMUST00000124802 ENSMUSP00000118502 TRANSLATION protein_coding stop - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0181 1 -2.0 MINOR ENSMUSG00000032841 Prr5l ENSMUST00000043845 ENSMUSP00000042167 TRANSLATION protein_coding - CCDS38186.1 1 370.0 0.0 5.08 11.4 0.0 0.0 -4,0 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000032841 Prr5l ENSMUST00000140387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032841 Prr5l ENSMUST00000154525 ENSMUSP00000120192 TRANSLATION protein_coding stop - 5 95.0 0.0 1.25 0.0 0.0 0.0 -4,0 0.0107 2 -2.0 MINOR ENSMUSG00000032841 Prr5l ENSMUST00000127358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038375 Trp53inp2 ENSMUST00000173406 - NO_TRANSLATION retained_intron ENSMUSG00000038375 Trp53inp2 ENSMUST00000151466 ENSMUSP00000121058 TRANSLATION protein_coding stop - 3 100.0 0.0 0.0 0.0 42.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038375 Trp53inp2 ENSMUST00000174685 ENSMUSP00000133880 TRANSLATION protein_coding stop - 3 170.0 0.0 1.0 0.0 65.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000038375 Trp53inp2 ENSMUST00000134218 ENSMUSP00000119169 TRANSLATION protein_coding stop - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038375 Trp53inp2 ENSMUST00000043237 ENSMUSP00000037627 TRANSLATION protein_coding - CCDS16947.1 1 221.0 0.0 1.13 8.9 118.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079056 Kcnip3 ENSMUST00000028850 ENSMUSP00000028850 TRANSLATION protein_coding - CCDS71139.1 1 284.0 18.0 5.75 1.1 89.7 0.0 -4,-2 0.2038 3 17.616 MINOR ENSMUSG00000079056 Kcnip3 ENSMUST00000137625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079056 Kcnip3 ENSMUST00000088538 ENSMUSP00000085896 TRANSLATION protein_coding - CCDS50703.1 1 230.0 18.0 5.948 36.2 89.7 0.0 -2,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000079056 Kcnip3 ENSMUST00000103215 ENSMUSP00000099504 TRANSLATION protein_coding - CCDS16703.1 1 256.0 18.0 5.75 10.0 89.7 0.0 -4,-6 0.4101 4 18.628 MINOR ENSMUSG00000027074 Slc43a3 ENSMUST00000141650 ENSMUSP00000116513 TRANSLATION protein_coding stop - 5 169.0 0.0 0.0 0.0 0.0 5.0 0,-3 0.0127 - -2.0 MINOR ENSMUSG00000027074 Slc43a3 ENSMUST00000155506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027074 Slc43a3 ENSMUST00000130278 ENSMUSP00000119122 TRANSLATION protein_coding stop - 3 49.0 0.0 0.0 0.0 0.0 1.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000027074 Slc43a3 ENSMUST00000155537 - NO_TRANSLATION retained_intron ENSMUSG00000027074 Slc43a3 ENSMUST00000138719 ENSMUSP00000121959 TRANSLATION protein_coding stop - 2 97.0 0.0 0.0 0.0 0.0 3.0 0,-3 0.0089 - -2.0 MINOR ENSMUSG00000027074 Slc43a3 ENSMUST00000090726 ENSMUSP00000088227 TRANSLATION protein_coding - CCDS38164.1 1 502.0 0.0 0.0 0.4 67.2 8.0 0,-3 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000058194 Or12e7 ENSMUST00000213366 ENSMUSP00000150504 TRANSLATION protein_coding - CCDS16292.1 3 314.0 0.0 1.0 8.3 174.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058194 Or12e7 ENSMUST00000071355 ENSMUSP00000071313 TRANSLATION protein_coding - CCDS16292.1 - 314.0 0.0 1.0 8.3 174.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075078 Or4a77 ENSMUST00000215730 ENSMUSP00000149720 TRANSLATION protein_coding - CCDS16389.1 5 314.0 0.0 1.0 5.9 170.1 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075078 Or4a77 ENSMUST00000111527 ENSMUSP00000107152 TRANSLATION protein_coding - CCDS16389.1 2 314.0 0.0 1.0 5.9 170.1 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075078 Or4a77 ENSMUST00000099768 ENSMUSP00000097356 TRANSLATION protein_coding - CCDS16389.1 - 314.0 0.0 1.0 5.9 170.1 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075219 Or5ak24 ENSMUST00000099925 ENSMUSP00000097509 TRANSLATION protein_coding - CCDS16207.1 - 314.0 0.0 1.0 8.0 162.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075219 Or5ak24 ENSMUST00000215758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075219 Or5ak24 ENSMUST00000214679 ENSMUSP00000151122 TRANSLATION protein_coding - CCDS16207.1 5 314.0 0.0 1.0 8.0 162.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075219 Or5ak24 ENSMUST00000217218 ENSMUSP00000149417 TRANSLATION protein_coding - CCDS16207.1 3 314.0 0.0 1.0 8.0 162.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050600 Zfp831 ENSMUST00000059452 ENSMUSP00000060255 TRANSLATION protein_coding - CCDS38361.1 5 1628.0 8.0 0.0 0.1 24.0 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000026942 Traf2 ENSMUST00000114234 ENSMUSP00000109872 TRANSLATION protein_coding - CCDS71002.1 5 508.0 20.0 7.6989 3.7 180.0 0.0 -4,-5 0.6044 9 17.778 MINOR ENSMUSG00000026942 Traf2 ENSMUST00000151742 - NO_TRANSLATION retained_intron ENSMUSG00000026942 Traf2 ENSMUST00000028311 ENSMUSP00000028311 TRANSLATION protein_coding - CCDS15779.1 1 501.0 20.0 7.59 5.0 206.2 0.0 -4,-5 1.0 9 19.784 PRINCIPAL:1 ENSMUSG00000050896 Rtn4rl2 ENSMUST00000151759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050896 Rtn4rl2 ENSMUST00000151799 ENSMUSP00000118362 TRANSLATION protein_coding start - 1 426.0 0.0 2.0 0.0 99.7 0.0 -1,-3 0.1799 4 -2.0 MINOR ENSMUSG00000050896 Rtn4rl2 ENSMUST00000054514 ENSMUSP00000057725 TRANSLATION protein_coding - CCDS16197.1 1 420.0 0.0 2.0 1.5 99.7 0.0 2,-2 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000026809 Spaca9 ENSMUST00000145014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026809 Spaca9 ENSMUST00000124840 ENSMUSP00000121846 TRANSLATION protein_coding - CCDS15845.1 1 168.0 0.0 3.0 10.2 269.3 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000026809 Spaca9 ENSMUST00000102877 ENSMUSP00000099941 TRANSLATION protein_coding - CCDS15845.1 1 168.0 0.0 3.0 10.2 269.3 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000026809 Spaca9 ENSMUST00000144209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027073 Prg2 ENSMUST00000028467 ENSMUSP00000028467 TRANSLATION protein_coding - CCDS16198.1 1 223.0 0.0 2.9 5.1 37.8 0.0 4,-1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000075224 Lrrc55 ENSMUST00000099930 ENSMUSP00000097514 TRANSLATION protein_coding - CCDS38167.1 1 311.0 0.0 1.2 4.8 53.1 2.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000075224 Lrrc55 ENSMUST00000234905 ENSMUSP00000157170 TRANSLATION nonsense_mediated_decay - - - 298.0 0.0 1.2 1.0 53.1 2.0 0,-3 0.3005 2 -2.0 MINOR ENSMUSG00000075224 Lrrc55 ENSMUST00000234267 ENSMUSP00000157165 TRANSLATION protein_coding - - - 298.0 0.0 1.2 1.0 53.1 2.0 0,-3 0.3005 2 12.0 MINOR ENSMUSG00000075224 Lrrc55 ENSMUST00000111601 ENSMUSP00000107228 TRANSLATION protein_coding - CCDS38167.1 5 311.0 0.0 1.2 4.8 53.1 2.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000098754 Prn ENSMUST00000136783 ENSMUSP00000122345 TRANSLATION protein_coding,RT - CCDS71149.1 2 197.0 0.0 1.0 0.0 236.2 0.0 -1,0 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000098754 Prn ENSMUST00000124100 ENSMUSP00000116195 TRANSLATION protein_coding,RT - CCDS71149.1 2 197.0 0.0 1.0 0.0 236.2 0.0 -1,0 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000027583 Zbtb46 ENSMUST00000146446 - NO_TRANSLATION retained_intron ENSMUSG00000027583 Zbtb46 ENSMUST00000087409 ENSMUSP00000084672 TRANSLATION protein_coding - CCDS17212.1 1 434.0 0.0 0.8 0.0 86.8 0.0 -4,-5 0.0174 - 5.382 MINOR ENSMUSG00000027583 Zbtb46 ENSMUST00000155535 ENSMUSP00000125584 TRANSLATION protein_coding stop - 3 42.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027583 Zbtb46 ENSMUST00000180222 ENSMUSP00000137014 TRANSLATION protein_coding - CCDS50854.1 1 600.0 8.0 1.7 7.5 144.2 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000027583 Zbtb46 ENSMUST00000029106 ENSMUSP00000029106 TRANSLATION protein_coding - CCDS50854.1 5 600.0 8.0 1.7 7.5 144.2 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000038572 Bpifb5 ENSMUST00000045959 ENSMUSP00000046683 TRANSLATION protein_coding - CCDS16928.1 1 490.0 0.0 0.0 3.0 43.7 0.0 4,-1 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000075085 Or4a70 ENSMUST00000143935 ENSMUSP00000150972 TRANSLATION protein_coding - CCDS16382.1 5 306.0 0.0 1.0 8.9 147.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075085 Or4a70 ENSMUST00000216001 ENSMUSP00000149368 TRANSLATION protein_coding - CCDS16382.1 5 306.0 0.0 1.0 8.9 147.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075085 Or4a70 ENSMUST00000099777 ENSMUSP00000097365 TRANSLATION protein_coding - CCDS16382.1 - 306.0 0.0 1.0 8.9 147.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075085 Or4a70 ENSMUST00000111540 ENSMUSP00000107165 TRANSLATION protein_coding - CCDS16382.1 3 306.0 0.0 1.0 8.9 147.4 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027048 Abcb11 ENSMUST00000133663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027048 Abcb11 ENSMUST00000102710 ENSMUSP00000099771 TRANSLATION protein_coding - CCDS16090.1 1 1321.0 0.0 20.92 11.8 669.6 6.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000027048 Abcb11 ENSMUST00000102709 ENSMUSP00000099770 TRANSLATION protein_coding - CCDS16090.1 5 1321.0 0.0 20.92 11.8 669.6 6.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000026806 Ddx31 ENSMUST00000113853 ENSMUSP00000109484 TRANSLATION protein_coding - CCDS15848.1 1 687.0 12.0 7.455 0.0 303.5 0.0 -4,-7 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000026806 Ddx31 ENSMUST00000147071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026806 Ddx31 ENSMUST00000147779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026806 Ddx31 ENSMUST00000152685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044863 Defb36 ENSMUST00000058086 ENSMUSP00000059665 TRANSLATION protein_coding - CCDS38279.1 1 67.0 0.0 1.6 8.2 36.3 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027111 Itga6 ENSMUST00000155596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027111 Itga6 ENSMUST00000155249 ENSMUSP00000118086 TRANSLATION protein_coding start - 1 667.0 15.0 3.04775 0.0 451.8 1.0 -4,-5 0.0113 23 -2.0 MINOR ENSMUSG00000027111 Itga6 ENSMUST00000112101 ENSMUSP00000107729 TRANSLATION protein_coding - CCDS71074.1 5 1091.0 26.0 6.83975 0.0 492.6 1.0 4,-1 0.2918 33 16.632 MINOR ENSMUSG00000027111 Itga6 ENSMUST00000139760 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027111 Itga6 ENSMUST00000028522 ENSMUSP00000028522 TRANSLATION protein_coding - CCDS16118.1 1 1073.0 26.0 6.83975 9.1 515.4 1.0 4,-1 1.0 34 21.0 PRINCIPAL:1 ENSMUSG00000027111 Itga6 ENSMUST00000133124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027111 Itga6 ENSMUST00000238991 ENSMUSP00000158895 TRANSLATION protein_coding - - - 1130.0 26.0 6.83975 2.0 492.6 1.0 4,-1 0.2471 33 17.001 MINOR ENSMUSG00000027111 Itga6 ENSMUST00000126787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027111 Itga6 ENSMUST00000152009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017300 Tnnc2 ENSMUST00000103095 ENSMUSP00000099384 TRANSLATION protein_coding - CCDS17056.1 1 160.0 28.0 3.83 35.7 115.0 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000017300 Tnnc2 ENSMUST00000155443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017767 Spata25 ENSMUST00000017911 ENSMUSP00000017911 TRANSLATION protein_coding - CCDS50799.1 1 226.0 0.0 0.2 6.2 443.4 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000017767 Spata25 ENSMUST00000141411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036160 Surf6 ENSMUST00000129554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036160 Surf6 ENSMUST00000140392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036160 Surf6 ENSMUST00000114043 ENSMUSP00000109677 TRANSLATION protein_coding - - 5 208.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 5 0.0 MINOR ENSMUSG00000036160 Surf6 ENSMUST00000142131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036160 Surf6 ENSMUST00000137904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036160 Surf6 ENSMUST00000047632 ENSMUSP00000048457 TRANSLATION protein_coding - CCDS15812.1 1 355.0 0.0 0.2 3.7 129.5 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000036160 Surf6 ENSMUST00000127691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000098789 Jmjd7 ENSMUST00000135365 ENSMUSP00000115076 TRANSLATION nonsense_mediated_decay - - 3 48.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000098789 Jmjd7 ENSMUST00000139862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000098789 Jmjd7 ENSMUST00000044675 ENSMUSP00000041220 TRANSLATION protein_coding - CCDS50676.1 1 316.0 3.0 6.75 17.6 268.4 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000098789 Jmjd7 ENSMUST00000129679 ENSMUSP00000115812 TRANSLATION nonsense_mediated_decay start - 3 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000098789 Jmjd7 ENSMUST00000130176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037771 Slc32a1 ENSMUST00000045738 ENSMUSP00000036299 TRANSLATION protein_coding - CCDS38309.1 1 525.0 0.0 0.8 34.9 331.0 0.0 -4,-1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000017007 Rbpjl ENSMUST00000137427 - NO_TRANSLATION retained_intron ENSMUSG00000017007 Rbpjl ENSMUST00000109356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017007 Rbpjl ENSMUST00000017151 ENSMUSP00000017151 TRANSLATION protein_coding - CCDS17035.1 1 515.0 7.0 7.55 4.6 352.4 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000090996 Gm20458 ENSMUST00000164863 ENSMUSP00000126658 TRANSLATION nonsense_mediated_decay,RT - - 5 78.0 0.0 1.75 8.1 65.8 0.0 -3,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000074652 Myh7b ENSMUST00000092995 ENSMUSP00000090672 TRANSLATION protein_coding - CCDS50768.1 5 1941.0 16.0 36.395 15.3 1485.5 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000074652 Myh7b ENSMUST00000154656 - NO_TRANSLATION retained_intron ENSMUSG00000074652 Myh7b ENSMUST00000124415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044560 Or4k52 ENSMUST00000214708 ENSMUSP00000149935 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 8.3 166.7 8.0 -3,-5 0.8641 - 11.0 ALTERNATIVE:1 ENSMUSG00000044560 Or4k52 ENSMUST00000054004 ENSMUSP00000061674 TRANSLATION protein_coding - CCDS16533.1 - 315.0 0.0 1.0 8.3 166.7 8.0 -3,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000044560 Or4k52 ENSMUST00000215244 ENSMUSP00000150896 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 8.3 166.7 8.0 -3,-5 0.8641 - 11.0 ALTERNATIVE:1 ENSMUSG00000074519 Zfp971 ENSMUST00000108925 ENSMUSP00000104553 TRANSLATION protein_coding - CCDS50835.1 1 64.0 0.0 1.75 0.4 74.0 0.0 -4,-5 0.0175 - 4.566 MINOR ENSMUSG00000074519 Zfp971 ENSMUST00000108926 ENSMUSP00000104554 TRANSLATION protein_coding - CCDS50834.1 3 470.0 54.0 2.3 0.1 345.9 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000068809 Or4c101 ENSMUST00000090701 ENSMUSP00000088202 TRANSLATION protein_coding - CCDS16340.1 - 312.0 0.0 1.0 0.0 163.7 7.0 -4,-7 0.599 - 8.0 ALTERNATIVE:2 ENSMUSG00000068809 Or4c101 ENSMUST00000217131 ENSMUSP00000150850 TRANSLATION protein_coding - - 3 301.0 0.0 1.0 0.1 163.7 7.0 -3,-5 0.8031 - 8.0 PRINCIPAL:4 ENSMUSG00000026879 Gsn ENSMUST00000202990 ENSMUSP00000144296 TRANSLATION protein_coding stop - 5 568.0 19.0 12.0 0.0 256.0 0.0 -4,-5 0.0005 16 -2.0 MINOR ENSMUSG00000026879 Gsn ENSMUST00000139867 ENSMUSP00000144217 TRANSLATION protein_coding stop - 5 166.0 5.0 3.0 0.0 63.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000026879 Gsn ENSMUST00000028239 ENSMUSP00000028239 TRANSLATION protein_coding - CCDS15960.1 1 780.0 23.0 16.5 3.8 351.8 0.0 4,-1 0.4158 23 18.392 MINOR ENSMUSG00000026879 Gsn ENSMUST00000124323 - NO_TRANSLATION retained_intron ENSMUSG00000026879 Gsn ENSMUST00000201185 ENSMUSP00000144561 TRANSLATION protein_coding - CCDS79785.1 1 731.0 23.0 16.5 29.6 351.8 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000026879 Gsn ENSMUST00000202899 ENSMUSP00000144470 TRANSLATION protein_coding stop - 3 251.0 9.0 5.5 0.0 134.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000026879 Gsn ENSMUST00000142324 ENSMUSP00000118120 TRANSLATION protein_coding stop - 5 251.0 9.0 5.5 0.0 134.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000039046 Usp6nl ENSMUST00000132391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039046 Usp6nl ENSMUST00000150515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039046 Usp6nl ENSMUST00000042503 ENSMUSP00000043178 TRANSLATION protein_coding - CCDS38044.1 1 842.0 0.0 10.0 0.3 183.1 0.0 -4,-5 0.3918 5 8.0 ALTERNATIVE:2 ENSMUSG00000039046 Usp6nl ENSMUST00000114937 ENSMUSP00000110587 TRANSLATION protein_coding - CCDS38043.1 1 819.0 0.0 10.0 0.4 183.1 0.0 -4,-5 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000108931 Or4g17 ENSMUST00000062407 ENSMUSP00000052153 TRANSLATION protein_coding - CCDS16524.1 5 311.0 0.0 1.0 9.4 152.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108931 Or4g17 ENSMUST00000209096 ENSMUSP00000147014 TRANSLATION protein_coding - CCDS16524.1 - 311.0 0.0 1.0 9.4 152.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047039 Or5w8 ENSMUST00000217376 ENSMUSP00000151107 TRANSLATION protein_coding - CCDS16312.1 5 308.0 0.0 1.0 12.5 152.6 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047039 Or5w8 ENSMUST00000061081 ENSMUSP00000055394 TRANSLATION protein_coding - CCDS16312.1 - 308.0 0.0 1.0 12.5 152.6 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094747 Or4f14b ENSMUST00000099604 ENSMUSP00000097199 TRANSLATION protein_coding - CCDS16537.1 5 312.0 0.0 1.0 12.5 143.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094747 Or4f14b ENSMUST00000099606 ENSMUSP00000097201 TRANSLATION protein_coding - CCDS16537.1 - 312.0 0.0 1.0 12.5 143.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061311 Rag1 ENSMUST00000078494 ENSMUSP00000077584 TRANSLATION protein_coding - CCDS16463.1 1 1040.0 15.0 1.0 8.8 479.2 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000043226 Or5g9 ENSMUST00000216443 ENSMUSP00000150450 TRANSLATION protein_coding - CCDS16216.1 5 314.0 0.0 1.0 12.3 183.1 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043226 Or5g9 ENSMUST00000213600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043226 Or5g9 ENSMUST00000055517 ENSMUSP00000061475 TRANSLATION protein_coding - CCDS16216.1 - 314.0 0.0 1.0 12.3 183.1 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000005883 Spo11 ENSMUST00000156471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005883 Spo11 ENSMUST00000144044 - NO_TRANSLATION retained_intron ENSMUSG00000005883 Spo11 ENSMUST00000050442 ENSMUSP00000059056 TRANSLATION protein_coding - CCDS17137.1 1 396.0 0.0 4.875 11.8 173.1 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000005883 Spo11 ENSMUST00000109125 ENSMUSP00000104753 TRANSLATION protein_coding - CCDS50812.1 1 358.0 0.0 4.875 7.6 170.5 0.0 -4,-5 0.7831 - 13.677 MINOR ENSMUSG00000005883 Spo11 ENSMUST00000109126 ENSMUSP00000104754 TRANSLATION protein_coding - CCDS50811.1 1 371.0 0.0 4.875 0.0 161.5 0.0 -4,-5 0.0959 - 11.304 MINOR ENSMUSG00000036813 Entpd8 ENSMUST00000150625 ENSMUSP00000142316 TRANSLATION nonsense_mediated_decay start - 5 105.0 0.0 1.066 0.0 34.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036813 Entpd8 ENSMUST00000152326 - NO_TRANSLATION retained_intron ENSMUSG00000036813 Entpd8 ENSMUST00000114380 ENSMUSP00000110022 TRANSLATION protein_coding - CCDS15748.1 1 497.0 0.0 10.0 8.8 348.5 1.0 -1,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000036813 Entpd8 ENSMUST00000044078 ENSMUSP00000040628 TRANSLATION protein_coding - CCDS15748.1 1 497.0 0.0 10.0 8.8 348.5 1.0 -1,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000036813 Entpd8 ENSMUST00000114376 ENSMUSP00000110017 TRANSLATION protein_coding - - 5 457.0 0.0 9.0 2.7 303.2 1.0 -1,-5 0.0865 3 7.938 MINOR ENSMUSG00000036813 Entpd8 ENSMUST00000149470 - NO_TRANSLATION retained_intron ENSMUSG00000036813 Entpd8 ENSMUST00000135004 - NO_TRANSLATION retained_intron ENSMUSG00000036813 Entpd8 ENSMUST00000127384 - NO_TRANSLATION retained_intron ENSMUSG00000075209 Or9g20 ENSMUST00000216425 ENSMUSP00000150747 TRANSLATION protein_coding - CCDS16221.1 3 309.0 0.0 1.0 9.8 169.3 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075209 Or9g20 ENSMUST00000217410 ENSMUSP00000149631 TRANSLATION protein_coding - CCDS16221.1 3 309.0 0.0 1.0 9.8 169.3 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075209 Or9g20 ENSMUST00000099915 ENSMUSP00000097499 TRANSLATION protein_coding - CCDS16221.1 - 309.0 0.0 1.0 9.8 169.3 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075200 Or8u9 ENSMUST00000215171 ENSMUSP00000150199 TRANSLATION protein_coding - CCDS16242.1 5 314.0 0.0 1.0 6.4 196.1 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075200 Or8u9 ENSMUST00000099906 ENSMUSP00000097490 TRANSLATION protein_coding - CCDS16242.1 - 314.0 0.0 1.0 6.4 196.1 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075200 Or8u9 ENSMUST00000215739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075200 Or8u9 ENSMUST00000215285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078870 Gm14410 ENSMUST00000156269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078870 Gm14410 ENSMUST00000108964 ENSMUSP00000104592 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078870 Gm14410 ENSMUST00000133301 ENSMUSP00000114668 TRANSLATION protein_coding - - 3 370.0 39.0 2.3 0.0 293.0 0.0 -4,-5 0.7969 - 18.0 PRINCIPAL:1 ENSMUSG00000027099 Mtx2 ENSMUST00000028511 ENSMUSP00000028511 TRANSLATION protein_coding - CCDS16148.1 1 263.0 9.0 6.75 8.8 186.4 0.0 -3,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000027099 Mtx2 ENSMUST00000155844 - NO_TRANSLATION retained_intron ENSMUSG00000027099 Mtx2 ENSMUST00000129284 - NO_TRANSLATION retained_intron ENSMUSG00000045106 Ccdc73 ENSMUST00000127840 ENSMUSP00000115091 TRANSLATION protein_coding stop - 3 164.0 0.0 4.6 0.0 292.4 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000045106 Ccdc73 ENSMUST00000111114 ENSMUSP00000106743 TRANSLATION protein_coding - CCDS16494.2 5 1066.0 0.0 10.73 0.0 1656.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045106 Ccdc73 ENSMUST00000144358 ENSMUSP00000114374 TRANSLATION protein_coding start - 3 186.0 0.0 0.0 0.0 248.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045106 Ccdc73 ENSMUST00000130611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045106 Ccdc73 ENSMUST00000151764 ENSMUSP00000120706 TRANSLATION protein_coding stop - 5 438.0 0.0 10.4 0.0 793.3 0.0 -4,-5 0.0749 - -2.0 MINOR ENSMUSG00000042796 Or5m3 ENSMUST00000111589 ENSMUSP00000107216 TRANSLATION protein_coding - CCDS16233.1 5 310.0 0.0 1.0 11.0 166.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042796 Or5m3 ENSMUST00000079298 ENSMUSP00000078279 TRANSLATION protein_coding - CCDS16233.1 5 310.0 0.0 1.0 11.0 166.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042796 Or5m3 ENSMUST00000062166 ENSMUSP00000054494 TRANSLATION protein_coding - CCDS16233.1 - 310.0 0.0 1.0 11.0 166.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000016252 Atp5f1e ENSMUST00000149191 - NO_TRANSLATION retained_intron ENSMUSG00000016252 Atp5f1e ENSMUST00000016396 ENSMUSP00000016396 TRANSLATION protein_coding - CCDS38360.1 1 52.0 0.0 1.33 24.9 70.1 0.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000016252 Atp5f1e ENSMUST00000153132 - NO_TRANSLATION retained_intron ENSMUSG00000072980 Oip5 ENSMUST00000110805 - NO_TRANSLATION retained_intron ENSMUSG00000072980 Oip5 ENSMUST00000123818 ENSMUSP00000115219 TRANSLATION protein_coding - CCDS38205.1 1 241.0 4.0 4.1 0.0 81.7 0.0 -4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078880 Gm14308 ENSMUST00000108990 ENSMUSP00000104618 TRANSLATION protein_coding - CCDS50830.1 2 498.0 59.0 2.3 0.1 394.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078880 Gm14308 ENSMUST00000119149 ENSMUSP00000113990 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078880 Gm14308 ENSMUST00000117267 ENSMUSP00000112702 TRANSLATION protein_coding - - 3 64.0 0.0 1.75 0.4 76.4 0.0 -4,-5 0.0 - 4.566 MINOR ENSMUSG00000078880 Gm14308 ENSMUST00000126807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078866 Zfp970 ENSMUST00000108952 ENSMUSP00000104580 TRANSLATION protein_coding - CCDS50831.1 2 522.0 62.0 2.75 0.0 381.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078866 Zfp970 ENSMUST00000099002 ENSMUSP00000096600 TRANSLATION protein_coding - - 2 76.0 0.0 1.75 0.0 73.4 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000037307 Banf2 ENSMUST00000110032 ENSMUSP00000105659 TRANSLATION protein_coding - CCDS16813.1 1 90.0 0.0 2.0 9.9 122.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000037307 Banf2 ENSMUST00000037722 ENSMUSP00000046219 TRANSLATION protein_coding - CCDS16813.1 1 90.0 0.0 2.0 9.9 122.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000027502 Rtf2 ENSMUST00000109132 - NO_TRANSLATION retained_intron ENSMUSG00000027502 Rtf2 ENSMUST00000029005 ENSMUSP00000029005 TRANSLATION protein_coding - CCDS17132.1 1 307.0 3.0 0.0 18.5 324.1 0.0 -4,-5 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000027502 Rtf2 ENSMUST00000140048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027474 Ccm2l ENSMUST00000127549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027474 Ccm2l ENSMUST00000127898 ENSMUSP00000158822 TRANSLATION nonsense_mediated_decay - - 1 192.0 0.0 2.25 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000027474 Ccm2l ENSMUST00000238488 ENSMUSP00000158754 TRANSLATION protein_coding - - - 564.0 0.0 4.45 5.3 159.6 0.0 -4,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000027474 Ccm2l ENSMUST00000109800 ENSMUSP00000105425 TRANSLATION protein_coding - CCDS50755.1 5 481.0 0.0 2.25 0.0 0.0 0.0 -4,-2 0.0194 1 1.602 MINOR ENSMUSG00000027474 Ccm2l ENSMUST00000129377 ENSMUSP00000122732 TRANSLATION protein_coding stop - 3 136.0 0.0 1.95 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000027071 P2rx3 ENSMUST00000028465 ENSMUSP00000028465 TRANSLATION protein_coding - CCDS16200.1 1 397.0 0.0 9.95 20.6 496.1 1.0 -4,-7 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000027071 P2rx3 ENSMUST00000127839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027071 P2rx3 ENSMUST00000111616 ENSMUSP00000107243 TRANSLATION protein_coding - - 5 373.0 0.0 9.2 0.1 347.2 1.0 -4,-7 0.0025 - 4.5 MINOR ENSMUSG00000027071 P2rx3 ENSMUST00000145285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027071 P2rx3 ENSMUST00000111613 ENSMUSP00000107240 TRANSLATION protein_coding - - 5 395.0 0.0 9.95 16.4 492.3 1.0 -4,-7 0.8128 - 11.144 ALTERNATIVE:1 ENSMUSG00000002109 Ddb2 ENSMUST00000135927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002109 Ddb2 ENSMUST00000152277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002109 Ddb2 ENSMUST00000028696 ENSMUSP00000028696 TRANSLATION protein_coding - CCDS16428.1 1 432.0 0.0 9.35 0.8 35.6 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000002109 Ddb2 ENSMUST00000150427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002109 Ddb2 ENSMUST00000111352 ENSMUSP00000106984 TRANSLATION protein_coding - - 1 296.0 0.0 6.75 0.1 35.6 0.0 -4,-6 0.0111 4 6.798 MINOR ENSMUSG00000038605 Samd10 ENSMUST00000183836 ENSMUSP00000139114 TRANSLATION nonsense_mediated_decay - - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000038605 Samd10 ENSMUST00000060173 ENSMUSP00000060499 TRANSLATION protein_coding - CCDS17217.1 1 202.0 0.0 2.33 9.5 68.8 0.0 -4,0 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000038605 Samd10 ENSMUST00000136249 - NO_TRANSLATION retained_intron ENSMUSG00000057207 Or5m11 ENSMUST00000080698 ENSMUSP00000079522 TRANSLATION protein_coding - CCDS16229.1 - 324.0 0.0 1.0 3.8 186.0 0.0 -3,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000044213 Or5t9 ENSMUST00000105211 ENSMUSP00000100846 TRANSLATION protein_coding - CCDS16269.1 - 330.0 0.0 1.0 1.3 172.8 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000044213 Or5t9 ENSMUST00000217509 ENSMUSP00000148902 TRANSLATION protein_coding - CCDS16269.1 5 330.0 0.0 1.0 1.3 172.8 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000035109 Shc4 ENSMUST00000042246 ENSMUSP00000043146 TRANSLATION protein_coding - CCDS16678.1 1 626.0 0.0 6.83 8.7 204.6 0.0 -4,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000035109 Shc4 ENSMUST00000157002 - NO_TRANSLATION retained_intron ENSMUSG00000035109 Shc4 ENSMUST00000110480 ENSMUSP00000106106 TRANSLATION protein_coding - - 1 340.0 0.0 4.0 1.1 120.8 0.0 -4,-5 0.01 3 1.353 MINOR ENSMUSG00000035109 Shc4 ENSMUST00000110477 ENSMUSP00000106103 TRANSLATION protein_coding - - 1 340.0 0.0 4.0 1.1 120.8 0.0 -4,-5 0.01 3 1.353 MINOR ENSMUSG00000062061 Obp2a ENSMUST00000077667 ENSMUSP00000076851 TRANSLATION protein_coding - CCDS15788.1 1 176.0 0.0 4.08 0.4 98.4 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000040479 Dgkz ENSMUST00000028667 ENSMUSP00000028667 TRANSLATION protein_coding - CCDS16441.1 1 929.0 17.0 4.891 7.1 344.3 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:4 ENSMUSG00000040479 Dgkz ENSMUST00000111303 ENSMUSP00000106934 TRANSLATION protein_coding - CCDS50643.1 1 1123.0 17.0 4.891 3.2 343.9 0.0 -4,-2 0.608 19 14.5 MINOR ENSMUSG00000040479 Dgkz ENSMUST00000099709 ENSMUSP00000106937 TRANSLATION protein_coding - - 5 946.0 17.0 4.891 2.4 344.3 0.0 -4,-6 0.3377 15 14.46 MINOR ENSMUSG00000040479 Dgkz ENSMUST00000142231 ENSMUSP00000114740 TRANSLATION nonsense_mediated_decay - - 1 81.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000040479 Dgkz ENSMUST00000126473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040479 Dgkz ENSMUST00000148297 - NO_TRANSLATION retained_intron ENSMUSG00000040479 Dgkz ENSMUST00000130023 - NO_TRANSLATION retained_intron ENSMUSG00000040479 Dgkz ENSMUST00000138894 - NO_TRANSLATION retained_intron ENSMUSG00000040479 Dgkz ENSMUST00000239257 ENSMUSP00000159231 TRANSLATION protein_coding - - - 934.0 17.0 4.891 7.1 344.3 0.0 -4,-6 0.7884 15 16.0 ALTERNATIVE:1 ENSMUSG00000040479 Dgkz ENSMUST00000128902 - NO_TRANSLATION retained_intron ENSMUSG00000040479 Dgkz ENSMUST00000142090 ENSMUSP00000119615 TRANSLATION nonsense_mediated_decay - - 5 94.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000040479 Dgkz ENSMUST00000128152 ENSMUSP00000118684 TRANSLATION nonsense_mediated_decay - - 5 134.0 6.0 0.09 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000040479 Dgkz ENSMUST00000124427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040479 Dgkz ENSMUST00000134103 - NO_TRANSLATION retained_intron ENSMUSG00000050199 Lgr4 ENSMUST00000046548 ENSMUSP00000047325 TRANSLATION protein_coding - CCDS38195.1 2 951.0 0.0 13.1 6.6 261.5 7.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000050199 Lgr4 ENSMUST00000152584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050199 Lgr4 ENSMUST00000111037 ENSMUSP00000106666 TRANSLATION protein_coding - - 5 927.0 0.0 12.35 3.0 260.4 7.0 3,-2 0.4384 4 11.148 MINOR ENSMUSG00000050199 Lgr4 ENSMUST00000142869 - NO_TRANSLATION retained_intron ENSMUSG00000111456 Or4a72 ENSMUST00000214870 ENSMUSP00000149075 TRANSLATION protein_coding - CCDS16384.1 - 307.0 0.0 1.0 5.3 161.1 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111456 Or4a72 ENSMUST00000217402 ENSMUSP00000150791 TRANSLATION protein_coding - CCDS16384.1 5 307.0 0.0 1.0 5.3 161.1 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000008999 Bmp7 ENSMUST00000009143 ENSMUSP00000009143 TRANSLATION protein_coding - CCDS17136.1 1 430.0 0.0 3.07 9.8 441.5 0.0 2,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000008999 Bmp7 ENSMUST00000137247 - NO_TRANSLATION retained_intron ENSMUSG00000027433 Xrn2 ENSMUST00000136136 - NO_TRANSLATION retained_intron ENSMUSG00000027433 Xrn2 ENSMUST00000137358 - NO_TRANSLATION retained_intron ENSMUSG00000027433 Xrn2 ENSMUST00000028921 ENSMUSP00000028921 TRANSLATION protein_coding - CCDS38258.1 1 951.0 4.0 7.54 15.8 343.3 0.0 -4,-7 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000027433 Xrn2 ENSMUST00000147057 - NO_TRANSLATION retained_intron ENSMUSG00000043909 Trp53bp1 ENSMUST00000132812 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043909 Trp53bp1 ENSMUST00000124554 ENSMUSP00000122629 TRANSLATION nonsense_mediated_decay start - 5 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000043909 Trp53bp1 ENSMUST00000131245 ENSMUSP00000114457 TRANSLATION protein_coding stop - 1 1018.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.012 14 -2.0 MINOR ENSMUSG00000043909 Trp53bp1 ENSMUST00000140285 - NO_TRANSLATION retained_intron ENSMUSG00000043909 Trp53bp1 ENSMUST00000129752 ENSMUSP00000120451 TRANSLATION nonsense_mediated_decay start - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043909 Trp53bp1 ENSMUST00000156493 - NO_TRANSLATION retained_intron ENSMUSG00000043909 Trp53bp1 ENSMUST00000135890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043909 Trp53bp1 ENSMUST00000131426 - NO_TRANSLATION retained_intron ENSMUSG00000043909 Trp53bp1 ENSMUST00000124411 - NO_TRANSLATION retained_intron ENSMUSG00000043909 Trp53bp1 ENSMUST00000154426 ENSMUSP00000117548 TRANSLATION nonsense_mediated_decay start - 5 166.0 0.0 2.25 0.0 139.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000043909 Trp53bp1 ENSMUST00000110648 ENSMUSP00000106278 TRANSLATION protein_coding - CCDS50684.1 5 1969.0 0.0 6.55 0.0 255.9 0.0 -4,-5 0.6177 28 8.0 ALTERNATIVE:2 ENSMUSG00000043909 Trp53bp1 ENSMUST00000124031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043909 Trp53bp1 ENSMUST00000142400 ENSMUSP00000119425 TRANSLATION protein_coding start - 2 81.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000043909 Trp53bp1 ENSMUST00000124060 - NO_TRANSLATION retained_intron ENSMUSG00000043909 Trp53bp1 ENSMUST00000147554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043909 Trp53bp1 ENSMUST00000136617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043909 Trp53bp1 ENSMUST00000147540 ENSMUSP00000119793 TRANSLATION nonsense_mediated_decay start - 5 190.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000043909 Trp53bp1 ENSMUST00000140582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043909 Trp53bp1 ENSMUST00000110647 ENSMUSP00000106277 TRANSLATION protein_coding - CCDS71125.1 1 1919.0 0.0 6.55 0.0 255.9 0.0 -4,-5 1.0 28 8.0 PRINCIPAL:2 ENSMUSG00000026872 Zeb2 ENSMUST00000201298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026872 Zeb2 ENSMUST00000202432 ENSMUSP00000144197 TRANSLATION protein_coding start/stop - 5 80.0 3.0 0.166 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000176438 ENSMUSP00000134849 TRANSLATION protein_coding - CCDS16020.1 5 1215.0 26.0 3.064 15.8 117.1 0.0 -4,-6 1.0 15 18.0 PRINCIPAL:4 ENSMUSG00000026872 Zeb2 ENSMUST00000201623 ENSMUSP00000144075 TRANSLATION protein_coding stop - 5 214.0 4.0 0.766 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000126743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026872 Zeb2 ENSMUST00000201413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026872 Zeb2 ENSMUST00000201804 ENSMUSP00000144637 TRANSLATION protein_coding stop - 5 731.0 15.0 2.464 0.0 100.7 0.0 -4,-5 0.0171 11 -2.0 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000145529 - NO_TRANSLATION retained_intron ENSMUSG00000026872 Zeb2 ENSMUST00000028229 ENSMUSP00000028229 TRANSLATION protein_coding - - 1 1259.0 26.0 3.064 0.0 117.1 0.0 -4,-5 0.2309 15 14.0 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000202935 ENSMUSP00000143841 TRANSLATION protein_coding stop - 5 113.0 0.0 0.1 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000177302 ENSMUSP00000134747 TRANSLATION protein_coding - CCDS16020.1 1 1215.0 26.0 3.064 15.8 117.1 0.0 -4,-6 1.0 15 18.0 PRINCIPAL:4 ENSMUSG00000026872 Zeb2 ENSMUST00000200844 ENSMUSP00000144421 TRANSLATION protein_coding - - 5 1191.0 26.0 3.064 2.0 117.1 0.0 -4,-6 0.3953 15 14.272 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000201490 ENSMUSP00000143976 TRANSLATION protein_coding stop - 3 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000202187 ENSMUSP00000144552 TRANSLATION protein_coding stop - 5 91.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000202345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026872 Zeb2 ENSMUST00000238346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026872 Zeb2 ENSMUST00000209076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026872 Zeb2 ENSMUST00000176732 ENSMUSP00000135393 TRANSLATION protein_coding - - 5 220.0 12.0 2.464 0.0 62.9 0.0 -4,-6 0.0002 1 5.2 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000131635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026872 Zeb2 ENSMUST00000201211 ENSMUSP00000144406 TRANSLATION protein_coding stop - 5 184.0 0.0 0.1 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000068415 ENSMUSP00000069685 TRANSLATION protein_coding - CCDS16020.1 1 1215.0 26.0 3.064 15.8 117.1 0.0 -4,-6 1.0 15 18.0 PRINCIPAL:4 ENSMUSG00000026872 Zeb2 ENSMUST00000124942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026872 Zeb2 ENSMUST00000202371 - NO_TRANSLATION retained_intron ENSMUSG00000026872 Zeb2 ENSMUST00000201982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026872 Zeb2 ENSMUST00000123037 - NO_TRANSLATION retained_intron ENSMUSG00000026872 Zeb2 ENSMUST00000153561 ENSMUSP00000135491 TRANSLATION protein_coding - - 1 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000201969 ENSMUSP00000144141 TRANSLATION protein_coding stop - 5 141.0 0.0 0.1 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000026872 Zeb2 ENSMUST00000152232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026872 Zeb2 ENSMUST00000076836 ENSMUSP00000076111 TRANSLATION protein_coding - - 5 1214.0 26.0 3.064 15.8 117.1 0.0 -4,-6 0.8815 15 18.0 ALTERNATIVE:1 ENSMUSG00000026872 Zeb2 ENSMUST00000127520 ENSMUSP00000120130 TRANSLATION protein_coding stop - 5 63.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000027577 Chrna4 ENSMUST00000135766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027577 Chrna4 ENSMUST00000124400 ENSMUSP00000123043 TRANSLATION protein_coding stop - 5 78.0 0.0 1.5 0.0 62.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000027577 Chrna4 ENSMUST00000198922 ENSMUSP00000143253 TRANSLATION protein_coding start - 5 125.0 0.0 1.5 0.0 96.1 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000027577 Chrna4 ENSMUST00000108851 ENSMUSP00000104479 TRANSLATION protein_coding - - 5 641.0 0.0 5.0 0.0 620.5 3.0 1,-2 0.3217 8 8.0 ALTERNATIVE:2 ENSMUSG00000027577 Chrna4 ENSMUST00000067120 ENSMUSP00000066338 TRANSLATION protein_coding - CCDS17192.1 1 629.0 0.0 5.0 0.0 620.5 3.0 1,-2 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000033955 Tnks1bp1 ENSMUST00000048400 ENSMUSP00000045767 TRANSLATION protein_coding - - 1 1058.0 0.0 0.0 0.0 214.5 0.0 -4,-5 0.8669 37 2.0 ALTERNATIVE:2 ENSMUSG00000033955 Tnks1bp1 ENSMUST00000238769 ENSMUSP00000158595 TRANSLATION protein_coding stop - - 276.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0024 9 -2.0 MINOR ENSMUSG00000033955 Tnks1bp1 ENSMUST00000139915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033955 Tnks1bp1 ENSMUST00000148682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033955 Tnks1bp1 ENSMUST00000151092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033955 Tnks1bp1 ENSMUST00000150200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033955 Tnks1bp1 ENSMUST00000126309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033955 Tnks1bp1 ENSMUST00000111605 ENSMUSP00000107232 TRANSLATION protein_coding - CCDS38166.1 1 1720.0 0.0 0.0 0.0 214.5 0.0 -4,-5 0.6179 54 2.0 PRINCIPAL:3 ENSMUSG00000027244 Atg13 ENSMUST00000126000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027244 Atg13 ENSMUST00000136412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027244 Atg13 ENSMUST00000076803 ENSMUSP00000076081 TRANSLATION protein_coding - CCDS16438.1 1 479.0 0.0 5.5 19.0 0.0 0.0 -4,-5 1.0 10 10.0 PRINCIPAL:1 ENSMUSG00000027244 Atg13 ENSMUST00000139548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027244 Atg13 ENSMUST00000153631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027244 Atg13 ENSMUST00000028678 ENSMUSP00000028678 TRANSLATION protein_coding - - 5 516.0 0.0 5.5 11.9 0.0 0.0 -4,-5 0.6886 10 8.424 MINOR ENSMUSG00000063873 Slc24a3 ENSMUST00000131123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063873 Slc24a3 ENSMUST00000153249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063873 Slc24a3 ENSMUST00000110007 ENSMUSP00000105634 TRANSLATION protein_coding - - 1 645.0 0.0 1.993 1.4 199.9 7.0 -4,-7 0.2748 2 8.267 ALTERNATIVE:2 ENSMUSG00000063873 Slc24a3 ENSMUST00000137908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063873 Slc24a3 ENSMUST00000081121 ENSMUSP00000079897 TRANSLATION protein_coding - CCDS38256.1 5 595.0 0.0 1.993 2.5 199.9 7.0 -4,-5 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000026748 Plxdc2 ENSMUST00000126173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026748 Plxdc2 ENSMUST00000114703 ENSMUSP00000110351 TRANSLATION protein_coding - - 5 479.0 0.0 0.0 1.0 28.3 1.0 0,-4 0.1492 7 2.0 MINOR ENSMUSG00000026748 Plxdc2 ENSMUST00000028081 ENSMUSP00000028081 TRANSLATION protein_coding - CCDS15705.1 1 530.0 0.0 0.0 12.4 28.3 1.0 0,-4 1.0 11 5.648 PRINCIPAL:3 ENSMUSG00000026748 Plxdc2 ENSMUST00000114702 ENSMUSP00000110350 TRANSLATION protein_coding - - 5 528.0 0.0 0.0 13.5 28.3 1.0 0,-4 0.8765 10 6.0 ALTERNATIVE:1 ENSMUSG00000027102 Hoxd8 ENSMUST00000019749 ENSMUSP00000019749 TRANSLATION protein_coding - CCDS16143.1 1 289.0 0.0 1.198 0.4 72.7 0.0 -2,-5 0.4171 3 8.0 ALTERNATIVE:2 ENSMUSG00000027102 Hoxd8 ENSMUST00000074721 ENSMUSP00000088094 TRANSLATION protein_coding - CCDS71077.1 1 288.0 0.0 1.198 0.4 72.7 0.0 -2,-5 0.4171 3 8.0 ALTERNATIVE:2 ENSMUSG00000027102 Hoxd8 ENSMUST00000151380 ENSMUSP00000118904 TRANSLATION protein_coding - CCDS79809.1 2 107.0 0.0 1.198 2.1 72.7 0.0 -4,0 1.0 1 9.0 PRINCIPAL:2 ENSMUSG00000032698 Lmo2 ENSMUST00000156813 ENSMUSP00000122369 TRANSLATION protein_coding stop - 2 144.0 15.0 3.0 0.0 97.8 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000032698 Lmo2 ENSMUST00000170926 ENSMUSP00000128317 TRANSLATION protein_coding - CCDS50652.1 2 158.0 16.0 3.5 32.9 104.8 0.0 -4,-5 1.0 - 21.358 PRINCIPAL:1 ENSMUSG00000032698 Lmo2 ENSMUST00000111143 ENSMUSP00000106773 TRANSLATION protein_coding - CCDS50651.1 1 220.0 16.0 3.82 4.6 104.8 0.0 -4,-6 0.2644 - 18.452 MINOR ENSMUSG00000032698 Lmo2 ENSMUST00000133210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032698 Lmo2 ENSMUST00000111140 ENSMUSP00000106770 TRANSLATION protein_coding - CCDS16482.2 1 228.0 16.0 3.82 0.0 104.8 0.0 -4,-7 0.0837 - 18.0 MINOR ENSMUSG00000032698 Lmo2 ENSMUST00000123437 ENSMUSP00000117703 TRANSLATION protein_coding stop - 2 158.0 16.0 3.5 32.9 104.8 0.0 -4,-5 0.8765 - -2.0 MINOR ENSMUSG00000032698 Lmo2 ENSMUST00000138815 ENSMUSP00000121927 TRANSLATION protein_coding stop - 3 59.0 4.0 1.25 0.0 29.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032698 Lmo2 ENSMUST00000111139 ENSMUSP00000106769 TRANSLATION protein_coding - - 5 156.0 8.0 2.07 0.0 57.4 0.0 -4,-7 0.0237 - 6.324 MINOR ENSMUSG00000036186 Dipk1b ENSMUST00000144449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036186 Dipk1b ENSMUST00000153849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036186 Dipk1b ENSMUST00000074240 ENSMUSP00000073860 TRANSLATION protein_coding - CCDS50542.1 1 431.0 0.0 0.0 23.3 385.0 0.0 -1,-2 1.0 9 10.0 PRINCIPAL:1 ENSMUSG00000074627 Mroh8 ENSMUST00000146848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074627 Mroh8 ENSMUST00000147602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074627 Mroh8 ENSMUST00000141081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074627 Mroh8 ENSMUST00000143663 ENSMUSP00000124362 TRANSLATION protein_coding - CCDS38303.2 1 1049.0 0.0 0.0 1.1 0.0 0.0 -4,-2 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000074627 Mroh8 ENSMUST00000150035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027317 Ppp1r14d ENSMUST00000110820 ENSMUSP00000106444 TRANSLATION protein_coding - CCDS71118.1 1 175.0 0.0 0.4 0.0 37.4 0.0 -4,-5 0.0167 - 3.666 MINOR ENSMUSG00000027317 Ppp1r14d ENSMUST00000076084 ENSMUSP00000075453 TRANSLATION protein_coding - CCDS16596.1 1 146.0 0.0 2.23 10.1 86.6 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000032715 Trib3 ENSMUST00000124995 - NO_TRANSLATION retained_intron ENSMUSG00000032715 Trib3 ENSMUST00000123145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032715 Trib3 ENSMUST00000040312 ENSMUSP00000041747 TRANSLATION protein_coding - CCDS16881.1 1 354.0 0.0 2.6 5.2 90.6 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044039 Or4g7 ENSMUST00000104889 ENSMUSP00000100485 TRANSLATION protein_coding - CCDS38196.1 - 312.0 0.0 1.0 10.5 146.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044039 Or4g7 ENSMUST00000214816 ENSMUSP00000150331 TRANSLATION protein_coding - CCDS38196.1 5 312.0 0.0 1.0 10.5 146.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059251 Or1j16 ENSMUST00000076850 ENSMUSP00000076122 TRANSLATION protein_coding - CCDS15977.1 - 311.0 0.0 1.0 8.3 191.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078940 Wfdc11 ENSMUST00000109332 ENSMUSP00000104956 TRANSLATION protein_coding - CCDS50797.1 1 82.0 0.0 1.33 0.3 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078940 Wfdc11 ENSMUST00000167694 ENSMUSP00000125964 TRANSLATION protein_coding - CCDS50797.1 5 82.0 0.0 1.33 0.3 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000051319 Mtln ENSMUST00000135091 ENSMUSP00000141107 TRANSLATION protein_coding - - 1 56.0 0.0 1.0 8.3 0.0 0.0 -3,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000040272 Accs ENSMUST00000041593 ENSMUSP00000036268 TRANSLATION protein_coding - CCDS16457.1 1 479.0 14.0 12.08 0.1 194.6 0.0 -4,-5 0.146 9 18.0 MINOR ENSMUSG00000040272 Accs ENSMUST00000130077 ENSMUSP00000114687 TRANSLATION protein_coding stop - 3 156.0 4.0 3.75 0.0 25.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040272 Accs ENSMUST00000146045 - NO_TRANSLATION retained_intron ENSMUSG00000040272 Accs ENSMUST00000148268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040272 Accs ENSMUST00000149073 - NO_TRANSLATION retained_intron ENSMUSG00000040272 Accs ENSMUST00000111246 ENSMUSP00000106877 TRANSLATION protein_coding - CCDS71105.1 1 502.0 14.0 12.08 7.9 194.6 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000040272 Accs ENSMUST00000128719 - NO_TRANSLATION retained_intron ENSMUSG00000040272 Accs ENSMUST00000141413 - NO_TRANSLATION retained_intron ENSMUSG00000040272 Accs ENSMUST00000150666 ENSMUSP00000119096 TRANSLATION nonsense_mediated_decay start - 5 75.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040272 Accs ENSMUST00000146436 - NO_TRANSLATION retained_intron ENSMUSG00000040272 Accs ENSMUST00000068513 ENSMUSP00000065389 TRANSLATION protein_coding - CCDS16457.1 5 479.0 14.0 12.08 0.1 194.6 0.0 -4,-5 0.146 9 18.0 MINOR ENSMUSG00000040272 Accs ENSMUST00000140018 - NO_TRANSLATION retained_intron ENSMUSG00000027305 Ndufaf1 ENSMUST00000110802 ENSMUSP00000106426 TRANSLATION protein_coding - - 1 328.0 0.0 3.75 10.3 162.9 0.0 -4,-2 0.8946 13 11.0 ALTERNATIVE:1 ENSMUSG00000027305 Ndufaf1 ENSMUST00000154127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027305 Ndufaf1 ENSMUST00000028768 ENSMUSP00000028768 TRANSLATION protein_coding - CCDS38207.1 1 330.0 0.0 3.75 10.3 162.9 0.0 -4,-2 1.0 13 11.0 PRINCIPAL:4 ENSMUSG00000027305 Ndufaf1 ENSMUST00000131596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027305 Ndufaf1 ENSMUST00000110801 ENSMUSP00000106425 TRANSLATION protein_coding - - 1 328.0 0.0 3.75 10.3 162.9 0.0 -4,-2 0.8946 13 11.0 ALTERNATIVE:1 ENSMUSG00000074946 Or4f60 ENSMUST00000099599 ENSMUSP00000097194 TRANSLATION protein_coding - CCDS16543.1 - 311.0 0.0 1.0 11.5 140.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074946 Or4f60 ENSMUST00000213577 ENSMUSP00000149681 TRANSLATION protein_coding - CCDS16543.1 5 311.0 0.0 1.0 11.5 140.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074946 Or4f60 ENSMUST00000216071 ENSMUSP00000148886 TRANSLATION protein_coding - CCDS16543.1 5 311.0 0.0 1.0 11.5 140.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027248 Pdia3 ENSMUST00000153378 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027248 Pdia3 ENSMUST00000130450 - NO_TRANSLATION retained_intron ENSMUSG00000027248 Pdia3 ENSMUST00000028683 ENSMUSP00000028683 TRANSLATION protein_coding - CCDS16643.1 1 505.0 8.0 12.55 6.7 317.6 0.0 3,-2 1.0 37 20.0 PRINCIPAL:1 ENSMUSG00000027248 Pdia3 ENSMUST00000135079 ENSMUSP00000119337 TRANSLATION nonsense_mediated_decay start - 5 124.0 4.0 2.99 0.0 112.6 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000026669 Mcm10 ENSMUST00000139882 - NO_TRANSLATION retained_intron ENSMUSG00000026669 Mcm10 ENSMUST00000150091 - NO_TRANSLATION retained_intron ENSMUSG00000026669 Mcm10 ENSMUST00000129443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026669 Mcm10 ENSMUST00000102985 ENSMUSP00000100050 TRANSLATION protein_coding - CCDS15662.1 1 885.0 4.0 5.775 0.1 542.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000026669 Mcm10 ENSMUST00000125851 - NO_TRANSLATION retained_intron ENSMUSG00000026669 Mcm10 ENSMUST00000151533 - NO_TRANSLATION retained_intron ENSMUSG00000026669 Mcm10 ENSMUST00000146257 - NO_TRANSLATION retained_intron ENSMUSG00000026669 Mcm10 ENSMUST00000125201 - NO_TRANSLATION retained_intron ENSMUSG00000026669 Mcm10 ENSMUST00000027980 ENSMUSP00000027980 TRANSLATION protein_coding - CCDS15662.1 1 885.0 4.0 5.775 0.1 542.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000026669 Mcm10 ENSMUST00000125349 - NO_TRANSLATION retained_intron ENSMUSG00000027569 Mrgbp ENSMUST00000149969 - NO_TRANSLATION retained_intron ENSMUSG00000027569 Mrgbp ENSMUST00000123609 - NO_TRANSLATION retained_intron ENSMUSG00000027569 Mrgbp ENSMUST00000130277 - NO_TRANSLATION retained_intron ENSMUSG00000027569 Mrgbp ENSMUST00000169630 ENSMUSP00000127747 TRANSLATION protein_coding - CCDS17178.1 1 204.0 0.0 2.55 5.6 52.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000027569 Mrgbp ENSMUST00000029085 ENSMUSP00000029085 TRANSLATION protein_coding - CCDS17178.1 1 204.0 0.0 2.55 5.6 52.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000027569 Mrgbp ENSMUST00000150757 - NO_TRANSLATION retained_intron ENSMUSG00000017003 Svs3a ENSMUST00000017147 ENSMUSP00000017147 TRANSLATION protein_coding - CCDS17030.1 1 265.0 0.0 0.0 0.1 25.5 0.0 3,-2 0.7859 3 0.0 PRINCIPAL:4 ENSMUSG00000017003 Svs3a ENSMUST00000109370 ENSMUSP00000104995 TRANSLATION protein_coding - CCDS79860.1 1 264.0 0.0 0.0 0.1 28.8 0.0 3,-2 0.6989 3 0.0 ALTERNATIVE:2 ENSMUSG00000042369 Rbm45 ENSMUST00000046389 ENSMUSP00000040420 TRANSLATION protein_coding - CCDS16157.1 1 476.0 0.0 3.9 9.5 158.4 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000040282 Cdin1 ENSMUST00000110918 ENSMUSP00000106543 TRANSLATION protein_coding - CCDS50663.1 1 281.0 0.0 8.5 18.8 177.1 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000040282 Cdin1 ENSMUST00000166472 ENSMUSP00000126772 TRANSLATION protein_coding - CCDS50662.1 1 287.0 0.0 8.17 18.8 166.4 0.0 -4,-6 0.9305 4 14.698 MINOR ENSMUSG00000040282 Cdin1 ENSMUST00000147968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039164 Naif1 ENSMUST00000048431 ENSMUSP00000048764 TRANSLATION protein_coding - CCDS15916.1 1 327.0 0.0 0.0 12.5 85.5 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000026893 Gca ENSMUST00000148083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026893 Gca ENSMUST00000028257 ENSMUSP00000028257 TRANSLATION protein_coding - CCDS16069.1 1 220.0 20.0 4.28 10.2 32.2 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000048482 Bdnf ENSMUST00000111045 ENSMUSP00000106674 TRANSLATION protein_coding - CCDS38194.1 1 249.0 0.0 0.8 20.3 162.5 0.0 3,-3 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000048482 Bdnf ENSMUST00000111050 ENSMUSP00000106679 TRANSLATION protein_coding - CCDS38194.1 1 249.0 0.0 0.8 20.3 162.5 0.0 3,-3 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000048482 Bdnf ENSMUST00000111051 ENSMUSP00000106680 TRANSLATION protein_coding - CCDS38194.1 1 249.0 0.0 0.8 20.3 162.5 0.0 3,-3 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000048482 Bdnf ENSMUST00000111043 ENSMUSP00000106672 TRANSLATION protein_coding - CCDS38194.1 1 249.0 0.0 0.8 20.3 162.5 0.0 3,-3 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000048482 Bdnf ENSMUST00000111044 ENSMUSP00000106673 TRANSLATION protein_coding - CCDS38194.1 1 249.0 0.0 0.8 20.3 162.5 0.0 3,-3 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000048482 Bdnf ENSMUST00000111046 ENSMUSP00000106675 TRANSLATION protein_coding - CCDS38194.1 1 249.0 0.0 0.8 20.3 162.5 0.0 3,-3 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000048482 Bdnf ENSMUST00000111042 ENSMUSP00000106671 TRANSLATION protein_coding - - 1 289.0 0.0 0.8 0.0 162.5 0.0 -4,-5 0.045 3 8.0 MINOR ENSMUSG00000048482 Bdnf ENSMUST00000111047 ENSMUSP00000106676 TRANSLATION protein_coding - CCDS38194.1 1 249.0 0.0 0.8 20.3 162.5 0.0 3,-3 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000048482 Bdnf ENSMUST00000111049 ENSMUSP00000106678 TRANSLATION protein_coding - CCDS38194.1 1 249.0 0.0 0.8 20.3 162.5 0.0 3,-3 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000048482 Bdnf ENSMUST00000176893 ENSMUSP00000135762 TRANSLATION protein_coding - CCDS38194.1 1 249.0 0.0 0.8 20.3 162.5 0.0 3,-3 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000048482 Bdnf ENSMUST00000053317 ENSMUSP00000057989 TRANSLATION protein_coding - CCDS38193.1 1 257.0 0.0 0.8 18.1 162.5 0.0 1,-4 0.9601 3 11.544 ALTERNATIVE:1 ENSMUSG00000026927 Entr1 ENSMUST00000028293 ENSMUSP00000028293 TRANSLATION protein_coding - CCDS50541.1 1 382.0 0.0 4.5 3.2 0.0 0.0 -4,-2 0.599 5 6.758 MINOR ENSMUSG00000026927 Entr1 ENSMUST00000140074 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026927 Entr1 ENSMUST00000139738 ENSMUSP00000121256 TRANSLATION protein_coding start/stop - 2 144.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0187 - -2.0 MINOR ENSMUSG00000026927 Entr1 ENSMUST00000077983 ENSMUSP00000077133 TRANSLATION protein_coding - CCDS50540.1 1 359.0 0.0 4.5 6.8 0.0 0.0 -4,-2 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000026927 Entr1 ENSMUST00000130954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026927 Entr1 ENSMUST00000140115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026927 Entr1 ENSMUST00000114100 ENSMUSP00000109735 TRANSLATION protein_coding - - 5 409.0 0.0 4.5 4.6 0.0 0.0 -4,0 0.5412 3 7.242 ALTERNATIVE:1 ENSMUSG00000026927 Entr1 ENSMUST00000136972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026927 Entr1 ENSMUST00000114102 ENSMUSP00000109737 TRANSLATION protein_coding - CCDS15803.2 1 432.0 0.0 4.5 4.6 0.0 0.0 -4,0 0.6536 4 7.242 ALTERNATIVE:1 ENSMUSG00000026927 Entr1 ENSMUST00000134737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026927 Entr1 ENSMUST00000132574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026927 Entr1 ENSMUST00000137814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026927 Entr1 ENSMUST00000133737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027398 Il1b ENSMUST00000155994 - NO_TRANSLATION retained_intron ENSMUSG00000027398 Il1b ENSMUST00000028881 ENSMUSP00000028881 TRANSLATION protein_coding - CCDS16726.1 1 269.0 0.0 3.0 8.0 269.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027398 Il1b ENSMUST00000141979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000115423 Gm56450 ENSMUST00000227806 ENSMUSP00000154508 TRANSLATION protein_coding - - - 50.0 0.0 1.0 1.0 0.0 0.0 -2,-5 0.6975 - 6.0 PRINCIPAL:1 ENSMUSG00000016458 Wt1 ENSMUST00000133470 ENSMUSP00000120054 TRANSLATION protein_coding stop - 5 406.0 13.0 3.82 0.0 567.4 0.0 -4,-6 0.0464 3 -2.0 MINOR ENSMUSG00000016458 Wt1 ENSMUST00000143043 ENSMUSP00000117891 TRANSLATION protein_coding start CCDS16496.2 1 517.0 16.0 4.32 1.0 534.7 0.0 -4,-5 0.163 3 -2.0 MINOR ENSMUSG00000016458 Wt1 ENSMUST00000111099 ENSMUSP00000106728 TRANSLATION protein_coding - - 5 302.0 16.0 4.32 6.1 333.8 0.0 -4,-5 0.6231 1 15.502 ALTERNATIVE:1 ENSMUSG00000016458 Wt1 ENSMUST00000111098 ENSMUSP00000106727 TRANSLATION protein_coding - - 5 288.0 16.0 4.57 6.1 350.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:2 ENSMUSG00000016458 Wt1 ENSMUST00000146842 ENSMUSP00000120702 TRANSLATION protein_coding stop - 5 406.0 16.0 4.45 0.0 398.7 0.0 -4,-6 0.0179 3 -2.0 MINOR ENSMUSG00000016458 Wt1 ENSMUST00000145107 - NO_TRANSLATION retained_intron ENSMUSG00000016458 Wt1 ENSMUST00000153944 - NO_TRANSLATION retained_intron ENSMUSG00000016458 Wt1 ENSMUST00000139585 ENSMUSP00000123592 TRANSLATION protein_coding start - 5 360.0 16.0 4.57 0.0 485.5 0.0 -4,-5 0.0794 3 -2.0 MINOR ENSMUSG00000026956 Uap1l1 ENSMUST00000151131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026956 Uap1l1 ENSMUST00000152537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026956 Uap1l1 ENSMUST00000138985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026956 Uap1l1 ENSMUST00000131025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026956 Uap1l1 ENSMUST00000146226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026956 Uap1l1 ENSMUST00000102925 ENSMUSP00000099989 TRANSLATION protein_coding - CCDS15767.1 1 507.0 21.0 7.65 8.1 206.7 0.0 -4,-6 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000075136 Or5d37 ENSMUST00000099834 ENSMUSP00000097422 TRANSLATION protein_coding - CCDS16325.1 - 326.0 0.0 1.0 1.3 157.5 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000027333 Smox ENSMUST00000028806 ENSMUSP00000028806 TRANSLATION protein_coding - CCDS16763.1 1 555.0 44.0 7.136 11.0 263.9 0.0 -4,-6 1.0 7 13.002 ALTERNATIVE:1 ENSMUSG00000027333 Smox ENSMUST00000110179 ENSMUSP00000105808 TRANSLATION protein_coding - CCDS50723.1 1 243.0 24.0 2.348 0.0 81.1 0.0 -4,-6 0.0029 4 0.0 MINOR ENSMUSG00000027333 Smox ENSMUST00000110181 ENSMUSP00000105810 TRANSLATION protein_coding - CCDS50722.1 1 385.0 35.0 6.056 0.7 181.3 0.0 -4,-6 0.0153 7 3.84 MINOR ENSMUSG00000027333 Smox ENSMUST00000151143 - NO_TRANSLATION retained_intron ENSMUSG00000027333 Smox ENSMUST00000131698 ENSMUSP00000114956 TRANSLATION protein_coding stop - 2 56.0 9.0 0.6 0.0 27.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000027333 Smox ENSMUST00000110183 ENSMUSP00000105812 TRANSLATION protein_coding - CCDS50724.1 1 248.0 30.0 3.348 0.0 110.8 0.0 -4,-6 0.0025 4 0.0 MINOR ENSMUSG00000027333 Smox ENSMUST00000129143 ENSMUSP00000120237 TRANSLATION protein_coding stop - 3 194.0 22.0 2.1 0.0 81.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000027333 Smox ENSMUST00000110180 ENSMUSP00000105809 TRANSLATION protein_coding - CCDS50718.1 1 419.0 37.0 6.272 0.0 189.4 0.0 -4,-6 0.0044 5 4.272 MINOR ENSMUSG00000027333 Smox ENSMUST00000151627 - NO_TRANSLATION retained_intron ENSMUSG00000027333 Smox ENSMUST00000183575 ENSMUSP00000139099 TRANSLATION nonsense_mediated_decay - - 3 80.0 13.0 1.298 0.0 46.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000027333 Smox ENSMUST00000110189 ENSMUSP00000105818 TRANSLATION protein_coding - CCDS50721.1 1 512.0 45.0 4.822 0.0 174.7 0.0 -4,-6 0.006 6 6.042 MINOR ENSMUSG00000027333 Smox ENSMUST00000183881 ENSMUSP00000139111 TRANSLATION nonsense_mediated_decay start - 3 68.0 2.0 0.448 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027333 Smox ENSMUST00000110188 ENSMUSP00000105817 TRANSLATION protein_coding - CCDS50720.1 1 536.0 47.0 4.692 0.0 176.0 0.0 -4,-6 0.0355 6 7.11 MINOR ENSMUSG00000027333 Smox ENSMUST00000110182 ENSMUSP00000105811 TRANSLATION protein_coding - CCDS50725.1 1 190.0 24.0 2.7 1.0 109.8 0.0 -4,-6 0.0374 3 0.0 MINOR ENSMUSG00000027333 Smox ENSMUST00000183947 ENSMUSP00000139278 TRANSLATION nonsense_mediated_decay - - 1 209.0 24.0 2.348 0.0 81.6 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000027333 Smox ENSMUST00000110186 ENSMUSP00000105815 TRANSLATION protein_coding - CCDS50719.1 1 585.0 44.0 6.886 11.0 256.0 0.0 -4,-6 0.8836 8 12.504 PRINCIPAL:3 ENSMUSG00000027333 Smox ENSMUST00000149180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027371 Fahd2a ENSMUST00000137366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027371 Fahd2a ENSMUST00000146615 - NO_TRANSLATION retained_intron ENSMUSG00000027371 Fahd2a ENSMUST00000028848 ENSMUSP00000028848 TRANSLATION protein_coding - CCDS16702.1 1 313.0 5.0 6.25 6.9 240.1 0.0 -4,0 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000027371 Fahd2a ENSMUST00000146437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027371 Fahd2a ENSMUST00000123327 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027371 Fahd2a ENSMUST00000146757 - NO_TRANSLATION retained_intron ENSMUSG00000027371 Fahd2a ENSMUST00000137502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033498 Strc ENSMUST00000149219 - NO_TRANSLATION retained_intron ENSMUSG00000033498 Strc ENSMUST00000129136 ENSMUSP00000118211 TRANSLATION nonsense_mediated_decay start - 5 108.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0246 - -2.0 MINOR ENSMUSG00000033498 Strc ENSMUST00000038389 ENSMUSP00000039378 TRANSLATION protein_coding - CCDS16641.1 1 1809.0 0.0 0.0 0.0 0.0 0.0 4,-1 1.0 - 0.0 PRINCIPAL:1 ENSMUSG00000033498 Strc ENSMUST00000134443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033498 Strc ENSMUST00000150332 - NO_TRANSLATION retained_intron ENSMUSG00000075174 Or8k3b ENSMUST00000214141 ENSMUSP00000149439 TRANSLATION protein_coding - CCDS16265.1 5 313.0 0.0 1.0 11.0 165.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075174 Or8k3b ENSMUST00000099877 ENSMUSP00000097462 TRANSLATION protein_coding - CCDS16265.1 - 313.0 0.0 1.0 11.0 165.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039108 Lsm14b ENSMUST00000055485 ENSMUSP00000055036 TRANSLATION protein_coding - CCDS17165.2 1 385.0 0.0 2.0 15.8 197.2 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000039108 Lsm14b ENSMUST00000140257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039108 Lsm14b ENSMUST00000058764 ENSMUSP00000062519 TRANSLATION protein_coding - - 1 305.0 0.0 0.0 6.4 90.9 0.0 -4,-6 0.137 6 1.46 MINOR ENSMUSG00000027409 1700020A23Rik ENSMUST00000189961 ENSMUSP00000140511 TRANSLATION protein_coding - CCDS50710.1 5 131.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.8666 - 0.0 PRINCIPAL:1 ENSMUSG00000027409 1700020A23Rik ENSMUST00000028898 ENSMUSP00000028898 TRANSLATION protein_coding - CCDS50710.1 1 131.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.8666 - 0.0 PRINCIPAL:1 ENSMUSG00000027409 1700020A23Rik ENSMUST00000110281 ENSMUSP00000105910 TRANSLATION protein_coding - CCDS50710.1 3 131.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.8666 - 0.0 PRINCIPAL:1 ENSMUSG00000074796 Slc4a11 ENSMUST00000138028 - NO_TRANSLATION retained_intron ENSMUSG00000074796 Slc4a11 ENSMUST00000099362 ENSMUSP00000096963 TRANSLATION protein_coding - CCDS38244.1 1 862.0 0.0 4.55 1.1 522.7 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000074796 Slc4a11 ENSMUST00000127397 ENSMUSP00000117976 TRANSLATION protein_coding stop - 3 164.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074796 Slc4a11 ENSMUST00000134647 - NO_TRANSLATION retained_intron ENSMUSG00000074796 Slc4a11 ENSMUST00000144945 - NO_TRANSLATION retained_intron ENSMUSG00000027624 Epb41l1 ENSMUST00000144013 ENSMUSP00000154929 TRANSLATION protein_coding start/stop - 3 213.0 0.0 3.0 0.0 202.3 0.0 -4,0 0.0 8 -2.0 MINOR ENSMUSG00000027624 Epb41l1 ENSMUST00000109577 ENSMUSP00000105205 TRANSLATION protein_coding - CCDS71169.1 5 867.0 0.0 8.1 7.8 484.9 0.0 -4,-5 0.8049 27 9.892 ALTERNATIVE:1 ENSMUSG00000027624 Epb41l1 ENSMUST00000109574 ENSMUSP00000105202 TRANSLATION protein_coding - CCDS71170.1 1 730.0 0.0 8.15445 7.8 484.9 0.0 -4,-5 1.0 22 10.0 ALTERNATIVE:1 ENSMUSG00000027624 Epb41l1 ENSMUST00000029155 ENSMUSP00000029155 TRANSLATION protein_coding - CCDS16966.1 5 879.0 0.0 8.1 6.6 486.1 0.0 -4,-5 0.7922 31 9.54 PRINCIPAL:3 ENSMUSG00000027624 Epb41l1 ENSMUST00000103137 ENSMUSP00000099426 TRANSLATION protein_coding - CCDS16966.1 1 879.0 0.0 8.1 6.6 486.1 0.0 -4,-5 0.7922 31 9.54 PRINCIPAL:3 ENSMUSG00000027624 Epb41l1 ENSMUST00000125153 ENSMUSP00000121161 TRANSLATION protein_coding - - 1 1556.0 0.0 8.15445 0.0 486.1 0.0 -4,-5 0.2894 50 8.0 MINOR ENSMUSG00000027624 Epb41l1 ENSMUST00000137067 - NO_TRANSLATION retained_intron ENSMUSG00000027624 Epb41l1 ENSMUST00000103136 ENSMUSP00000099425 TRANSLATION protein_coding - CCDS16966.1 1 879.0 0.0 8.1 6.6 486.1 0.0 -4,-5 0.7922 31 9.54 PRINCIPAL:3 ENSMUSG00000027624 Epb41l1 ENSMUST00000142048 - NO_TRANSLATION retained_intron ENSMUSG00000026771 Spopl ENSMUST00000136290 - NO_TRANSLATION retained_intron ENSMUSG00000026771 Spopl ENSMUST00000195415 - NO_TRANSLATION retained_intron ENSMUSG00000026771 Spopl ENSMUST00000028110 ENSMUSP00000141519 TRANSLATION nonsense_mediated_decay - - 1 156.0 0.0 3.5 0.0 29.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026771 Spopl ENSMUST00000123843 ENSMUSP00000142158 TRANSLATION nonsense_mediated_decay - - 3 72.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026771 Spopl ENSMUST00000132827 ENSMUSP00000142047 TRANSLATION nonsense_mediated_decay - - 1 190.0 0.0 3.83 0.0 29.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026771 Spopl ENSMUST00000132484 ENSMUSP00000114974 TRANSLATION protein_coding - CCDS15730.1 5 392.0 0.0 8.13 34.7 137.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000062647 Rpl7a ENSMUST00000137376 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062647 Rpl7a ENSMUST00000143678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062647 Rpl7a ENSMUST00000102898 ENSMUSP00000099962 TRANSLATION protein_coding - CCDS15815.1 1 266.0 0.0 6.0 17.1 81.9 0.0 -4,-6 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000062647 Rpl7a ENSMUST00000149339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062647 Rpl7a ENSMUST00000147143 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062647 Rpl7a ENSMUST00000129673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062647 Rpl7a ENSMUST00000136269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075140 Or5d18 ENSMUST00000129056 ENSMUSP00000149472 TRANSLATION protein_coding - CCDS16322.1 2 313.0 0.0 1.0 12.5 162.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075140 Or5d18 ENSMUST00000099838 ENSMUSP00000097426 TRANSLATION protein_coding - CCDS16322.1 - 313.0 0.0 1.0 12.5 162.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026812 Tsc1 ENSMUST00000113870 ENSMUSP00000109501 TRANSLATION protein_coding - CCDS15844.1 1 1160.0 0.0 10.45 4.1 981.6 1.0 -4,-5 1.0 19 13.838 PRINCIPAL:1 ENSMUSG00000026812 Tsc1 ENSMUST00000156857 ENSMUSP00000115380 TRANSLATION nonsense_mediated_decay - - 5 368.0 0.0 5.45 0.0 583.0 1.0 -4,-5 0.0048 6 -2.0 MINOR ENSMUSG00000026812 Tsc1 ENSMUST00000133565 ENSMUSP00000120888 TRANSLATION nonsense_mediated_decay - - 5 459.0 0.0 5.45 0.0 670.7 1.0 -4,-5 0.0276 6 -2.0 MINOR ENSMUSG00000026812 Tsc1 ENSMUST00000028155 ENSMUSP00000028155 TRANSLATION protein_coding - CCDS15844.1 1 1160.0 0.0 10.45 4.1 981.6 1.0 -4,-5 1.0 19 13.838 PRINCIPAL:1 ENSMUSG00000026812 Tsc1 ENSMUST00000124507 - NO_TRANSLATION retained_intron ENSMUSG00000026812 Tsc1 ENSMUST00000125715 - NO_TRANSLATION retained_intron ENSMUSG00000026812 Tsc1 ENSMUST00000113869 ENSMUSP00000109500 TRANSLATION protein_coding - CCDS79762.1 1 1161.0 0.0 10.45 2.1 984.3 1.0 -4,-5 0.9366 19 12.71 MINOR ENSMUSG00000026812 Tsc1 ENSMUST00000139642 - NO_TRANSLATION retained_intron ENSMUSG00000026812 Tsc1 ENSMUST00000113867 ENSMUSP00000109498 TRANSLATION protein_coding - CCDS71013.1 1 1155.0 0.0 10.45 0.3 960.7 1.0 -4,-5 0.4233 19 10.584 MINOR ENSMUSG00000026812 Tsc1 ENSMUST00000153625 - NO_TRANSLATION retained_intron ENSMUSG00000026812 Tsc1 ENSMUST00000150274 - NO_TRANSLATION retained_intron ENSMUSG00000045148 Or4c12b ENSMUST00000057369 ENSMUSP00000060602 TRANSLATION protein_coding - CCDS16393.1 - 310.0 0.0 1.0 1.5 147.3 4.0 -4,-7 0.589 - 12.171 MINOR ENSMUSG00000045148 Or4c12b ENSMUST00000214508 ENSMUSP00000150299 TRANSLATION protein_coding - - 5 304.0 0.0 1.0 9.7 147.3 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000026894 Morn5 ENSMUST00000028256 ENSMUSP00000028256 TRANSLATION protein_coding - CCDS15968.1 1 170.0 0.0 4.15 0.3 51.6 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000027399 Il1a ENSMUST00000028882 ENSMUSP00000028882 TRANSLATION protein_coding - CCDS16725.1 1 270.0 0.0 3.0 5.0 250.4 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000050619 Zscan29 ENSMUST00000146243 ENSMUSP00000120997 TRANSLATION protein_coding - - 1 206.0 0.0 1.0 0.0 142.7 0.0 -4,0 0.0 - 3.0 MINOR ENSMUSG00000050619 Zscan29 ENSMUST00000163766 ENSMUSP00000125987 TRANSLATION protein_coding - - 5 869.0 24.0 2.0 0.0 423.9 0.0 -4,0 0.855 - 14.0 PRINCIPAL:2 ENSMUSG00000050619 Zscan29 ENSMUST00000110661 ENSMUSP00000106289 TRANSLATION protein_coding - CCDS71123.1 5 834.0 24.0 2.0 0.3 423.9 0.0 -4,0 0.461 - 14.0 ALTERNATIVE:2 ENSMUSG00000050619 Zscan29 ENSMUST00000156370 - NO_TRANSLATION retained_intron ENSMUSG00000050619 Zscan29 ENSMUST00000079024 ENSMUSP00000078033 TRANSLATION protein_coding - - 5 548.0 0.0 1.0 0.0 274.2 0.0 -4,0 0.0025 - 3.0 MINOR ENSMUSG00000075168 Or8h9 ENSMUST00000099871 ENSMUSP00000097456 TRANSLATION protein_coding - CCDS16272.1 - 312.0 0.0 1.0 7.8 181.8 5.0 -3,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075168 Or8h9 ENSMUST00000213456 ENSMUSP00000149528 TRANSLATION protein_coding - CCDS16272.1 5 312.0 0.0 1.0 7.8 181.8 5.0 -3,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027015 Cybrd1 ENSMUST00000028403 ENSMUSP00000028403 TRANSLATION protein_coding - CCDS50603.1 1 290.0 0.0 3.8 14.2 148.9 0.0 -1,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000026937 Lcn5 ENSMUST00000028306 ENSMUSP00000028306 TRANSLATION protein_coding - CCDS38079.1 1 192.0 7.0 4.28 0.0 75.8 0.0 4,-1 1.0 8 14.0 PRINCIPAL:3 ENSMUSG00000026937 Lcn5 ENSMUST00000143401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000026937 Lcn5 ENSMUST00000100312 ENSMUSP00000097887 TRANSLATION protein_coding - CCDS71003.1 1 192.0 7.0 4.016 0.0 75.8 0.0 4,-1 0.8195 7 13.472 ALTERNATIVE:2 ENSMUSG00000026937 Lcn5 ENSMUST00000100313 ENSMUSP00000097888 TRANSLATION protein_coding - CCDS38078.1 1 180.0 7.0 3.95 0.0 75.8 0.0 4,-1 0.1964 7 13.34 ALTERNATIVE:2 ENSMUSG00000053166 Cdh22 ENSMUST00000138643 ENSMUSP00000120785 TRANSLATION nonsense_mediated_decay - - 5 408.0 39.0 5.1 1.0 175.9 0.0 3,-2 0.012 1 -2.0 MINOR ENSMUSG00000053166 Cdh22 ENSMUST00000065438 ENSMUSP00000066864 TRANSLATION protein_coding - CCDS17073.1 1 813.0 54.0 9.65 0.4 426.8 0.0 3,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000027171 Prrg4 ENSMUST00000126824 ENSMUSP00000121788 TRANSLATION protein_coding stop - 2 145.0 7.0 1.5 0.0 67.7 1.0 4,-1 0.0989 - -2.0 MINOR ENSMUSG00000027171 Prrg4 ENSMUST00000028593 ENSMUSP00000028593 TRANSLATION protein_coding - CCDS16493.1 1 226.0 7.0 1.5 9.6 67.7 1.0 4,-1 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000035295 Wdr38 ENSMUST00000124062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035295 Wdr38 ENSMUST00000112872 ENSMUSP00000108493 TRANSLATION protein_coding - CCDS38119.1 1 303.0 0.0 6.74875 0.0 181.9 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035295 Wdr38 ENSMUST00000039535 ENSMUSP00000043834 TRANSLATION nonsense_mediated_decay - CCDS38119.1 2 303.0 0.0 6.74875 0.0 181.9 0.0 -4,-1 1.0 - -2.0 MINOR ENSMUSG00000048038 Ccdc187 ENSMUST00000227200 ENSMUSP00000153797 TRANSLATION protein_coding - - - 2202.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.3487 2 0.0 ALTERNATIVE:2 ENSMUSG00000048038 Ccdc187 ENSMUST00000217256 ENSMUSP00000150719 TRANSLATION protein_coding - - 5 2163.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.3487 2 0.0 ALTERNATIVE:2 ENSMUSG00000048038 Ccdc187 ENSMUST00000057224 ENSMUSP00000054283 TRANSLATION protein_coding - CCDS50539.1 1 958.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.9503 - 0.0 PRINCIPAL:2 ENSMUSG00000049560 Defb20 ENSMUST00000109836 ENSMUSP00000105462 TRANSLATION protein_coding - CCDS38275.1 1 96.0 0.0 0.0 2.5 28.3 0.0 3,-2 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000027505 Fam209 ENSMUST00000029007 ENSMUSP00000029007 TRANSLATION protein_coding - CCDS50809.1 1 170.0 0.0 0.0 4.6 246.4 0.0 2,-3 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000096770 Amy2a4 ENSMUST00000179568 ENSMUSP00000137025 TRANSLATION protein_coding - CCDS51054.1 1 508.0 44.0 10.0 29.4 118.1 0.0 4,-1 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000055865 Tafa3 ENSMUST00000162644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055865 Tafa3 ENSMUST00000139783 ENSMUSP00000123514 TRANSLATION protein_coding - CCDS51032.1 1 132.0 0.0 2.0 15.6 161.2 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000046793 Gpr61 ENSMUST00000116284 ENSMUSP00000111988 TRANSLATION nonsense_mediated_decay - CCDS17752.1 1 449.0 0.0 0.132 9.9 122.2 7.0 -4,-2 1.0 - -2.0 MINOR ENSMUSG00000046793 Gpr61 ENSMUST00000062028 ENSMUSP00000055557 TRANSLATION protein_coding - CCDS17752.1 1 449.0 0.0 0.132 9.9 122.2 7.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068860 Gm128 ENSMUST00000090815 ENSMUSP00000088324 TRANSLATION protein_coding - CCDS17608.1 1 350.0 0.0 0.0 0.4 468.1 0.0 3,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000068860 Gm128 ENSMUST00000107197 ENSMUSP00000102815 TRANSLATION protein_coding - - 2 189.0 0.0 0.0 0.0 93.7 0.0 3,-2 0.0031 1 0.0 MINOR ENSMUSG00000008604 Ubqln4 ENSMUST00000195498 - NO_TRANSLATION retained_intron ENSMUSG00000008604 Ubqln4 ENSMUST00000192962 ENSMUSP00000142145 TRANSLATION nonsense_mediated_decay - - 3 45.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000008604 Ubqln4 ENSMUST00000008748 ENSMUSP00000008748 TRANSLATION protein_coding - CCDS17479.1 1 596.0 0.0 3.83 5.5 84.3 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000008604 Ubqln4 ENSMUST00000192687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008604 Ubqln4 ENSMUST00000194303 - NO_TRANSLATION retained_intron ENSMUSG00000025762 Larp1b ENSMUST00000192456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025762 Larp1b ENSMUST00000026862 ENSMUSP00000026862 TRANSLATION protein_coding - - 1 102.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000025762 Larp1b ENSMUST00000200432 ENSMUSP00000143244 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025762 Larp1b ENSMUST00000191805 ENSMUSP00000141487 TRANSLATION protein_coding - CCDS38423.1 5 335.0 0.0 2.2 6.1 78.8 0.0 -4,-5 1.0 6 10.142 PRINCIPAL:1 ENSMUSG00000025762 Larp1b ENSMUST00000065411 - NO_TRANSLATION retained_intron ENSMUSG00000025762 Larp1b ENSMUST00000199797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025762 Larp1b ENSMUST00000197092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025762 Larp1b ENSMUST00000099121 ENSMUSP00000096721 TRANSLATION protein_coding - - 1 248.0 0.0 4.13 0.0 0.0 0.0 -4,-6 0.0263 - 6.0 MINOR ENSMUSG00000025762 Larp1b ENSMUST00000191998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025762 Larp1b ENSMUST00000197214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025762 Larp1b ENSMUST00000194006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025762 Larp1b ENSMUST00000191872 ENSMUSP00000142106 TRANSLATION protein_coding - - 1 288.0 0.0 2.2 0.0 78.8 0.0 -4,-5 0.0049 6 8.142 MINOR ENSMUSG00000025762 Larp1b ENSMUST00000048490 ENSMUSP00000037127 TRANSLATION protein_coding - - 1 541.0 0.0 2.2 0.1 78.8 0.0 -4,-7 0.0974 11 8.142 MINOR ENSMUSG00000025762 Larp1b ENSMUST00000191882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047959 Kcna3 ENSMUST00000052718 ENSMUSP00000050680 TRANSLATION protein_coding - CCDS17730.1 - 528.0 0.0 1.0 0.4 273.5 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000040322 Slc25a24 ENSMUST00000029477 ENSMUSP00000029477 TRANSLATION protein_coding - CCDS17772.1 1 475.0 18.0 7.88 26.2 321.5 0.0 -2,-6 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000040322 Slc25a24 ENSMUST00000140786 ENSMUSP00000143109 TRANSLATION nonsense_mediated_decay - - 3 110.0 14.0 2.0 0.0 41.5 0.0 -2,-6 0.0 2 -2.0 MINOR ENSMUSG00000053398 Phgdh ENSMUST00000152106 - NO_TRANSLATION retained_intron ENSMUSG00000053398 Phgdh ENSMUST00000153694 - NO_TRANSLATION retained_intron ENSMUSG00000053398 Phgdh ENSMUST00000065793 ENSMUSP00000064755 TRANSLATION protein_coding - CCDS17663.1 1 533.0 26.0 8.68 17.5 332.2 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000053398 Phgdh ENSMUST00000148488 ENSMUSP00000117525 TRANSLATION protein_coding start/stop - 5 149.0 12.0 3.78 0.0 159.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000094328 Tdpoz9 ENSMUST00000180746 ENSMUSP00000138015 TRANSLATION protein_coding - CCDS57232.1 1 365.0 0.0 0.64 0.0 98.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094328 Tdpoz9 ENSMUST00000178458 ENSMUSP00000136564 TRANSLATION protein_coding - CCDS57232.1 - 365.0 0.0 0.64 0.0 98.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049097 Ankrd34a ENSMUST00000058943 ENSMUSP00000102707 TRANSLATION protein_coding - CCDS38556.1 1 495.0 0.0 0.5 10.7 50.5 0.0 -4,-7 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000050359 Sprr1a ENSMUST00000054599 ENSMUSP00000053751 TRANSLATION protein_coding - CCDS17559.1 1 144.0 0.0 0.0 0.0 171.7 0.0 -4,-6 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000027715 Ccna2 ENSMUST00000029270 ENSMUSP00000029270 TRANSLATION protein_coding - CCDS17313.1 1 422.0 0.0 5.5 1.1 416.4 0.0 -4,-7 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000027715 Ccna2 ENSMUST00000145309 - NO_TRANSLATION retained_intron ENSMUSG00000027715 Ccna2 ENSMUST00000196316 ENSMUSP00000142946 TRANSLATION protein_coding - - 5 285.0 0.0 5.5 0.0 258.3 0.0 -4,-5 0.0297 4 6.0 MINOR ENSMUSG00000027715 Ccna2 ENSMUST00000156575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027715 Ccna2 ENSMUST00000147380 ENSMUSP00000118239 TRANSLATION nonsense_mediated_decay - - 5 153.0 0.0 0.0 0.0 133.5 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000103392 Gm38303 ENSMUST00000192603 ENSMUSP00000141735 TRANSLATION nonsense_mediated_decay,RT - - 5 100.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.6274 - -2.0 PRINCIPAL:1 ENSMUSG00000028068 Iqgap3 ENSMUST00000193861 - NO_TRANSLATION retained_intron ENSMUSG00000028068 Iqgap3 ENSMUST00000194772 - NO_TRANSLATION retained_intron ENSMUSG00000028068 Iqgap3 ENSMUST00000071812 ENSMUSP00000071715 TRANSLATION protein_coding - CCDS38478.1 1 1632.0 0.0 16.5785 8.1 434.1 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000028068 Iqgap3 ENSMUST00000194440 ENSMUSP00000142035 TRANSLATION protein_coding - - 1 734.0 0.0 10.35 0.0 292.6 0.0 -4,-5 0.0019 4 0.0 MINOR ENSMUSG00000028068 Iqgap3 ENSMUST00000195465 ENSMUSP00000142013 TRANSLATION nonsense_mediated_decay - - 1 626.0 0.0 5.0 0.0 64.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028068 Iqgap3 ENSMUST00000193940 - NO_TRANSLATION retained_intron ENSMUSG00000078783 Sirpd ENSMUST00000108361 ENSMUSP00000103998 TRANSLATION protein_coding - CCDS38393.1 1 178.0 0.0 1.2 0.0 62.5 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049565 Aknad1 ENSMUST00000133931 ENSMUSP00000121755 TRANSLATION protein_coding - CCDS51049.1 1 675.0 0.0 0.0 0.3 108.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000049565 Aknad1 ENSMUST00000123556 ENSMUSP00000125068 TRANSLATION nonsense_mediated_decay - - 2 414.0 0.0 0.0 0.0 107.4 0.0 -4,-5 0.0459 - -2.0 MINOR ENSMUSG00000049565 Aknad1 ENSMUST00000150998 - NO_TRANSLATION retained_intron ENSMUSG00000049565 Aknad1 ENSMUST00000147916 - NO_TRANSLATION retained_intron ENSMUSG00000068889 Lce1e ENSMUST00000090867 ENSMUSP00000088380 TRANSLATION protein_coding - CCDS17567.1 1 143.0 0.0 0.0 0.0 29.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028141 Oaz3 ENSMUST00000199318 - NO_TRANSLATION retained_intron ENSMUSG00000028141 Oaz3 ENSMUST00000204980 ENSMUSP00000144790 TRANSLATION protein_coding start - 5 56.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028141 Oaz3 ENSMUST00000204548 ENSMUSP00000145079 TRANSLATION protein_coding - - 5 102.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000028141 Oaz3 ENSMUST00000196799 - NO_TRANSLATION retained_intron ENSMUSG00000028141 Oaz3 ENSMUST00000199678 ENSMUSP00000143080 TRANSLATION protein_coding - CCDS84654.1 5 243.0 0.0 2.878 0.4 55.7 0.0 -4,0 0.308 1 6.0 ALTERNATIVE:2 ENSMUSG00000028141 Oaz3 ENSMUST00000204913 ENSMUSP00000145113 TRANSLATION protein_coding - - 5 147.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 0.0 MINOR ENSMUSG00000028141 Oaz3 ENSMUST00000203883 ENSMUSP00000145484 TRANSLATION protein_coding - - 5 198.0 0.0 2.878 0.3 55.7 0.0 -4,-5 0.7272 - 6.0 PRINCIPAL:2 ENSMUSG00000027801 Tm4sf4 ENSMUST00000029377 ENSMUSP00000029377 TRANSLATION protein_coding - CCDS17361.1 1 202.0 0.0 2.3 0.0 255.7 0.0 -1,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000042613 Pbxip1 ENSMUST00000038942 ENSMUSP00000040429 TRANSLATION protein_coding - CCDS17510.1 1 727.0 0.0 0.0 0.1 0.0 1.0 -4,-5 0.9467 16 0.0 PRINCIPAL:1 ENSMUSG00000042613 Pbxip1 ENSMUST00000141340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042613 Pbxip1 ENSMUST00000145753 ENSMUSP00000121658 TRANSLATION protein_coding stop - 5 155.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0216 3 -2.0 MINOR ENSMUSG00000042613 Pbxip1 ENSMUST00000130858 ENSMUSP00000118496 TRANSLATION protein_coding stop - 3 249.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0572 4 -2.0 MINOR ENSMUSG00000042613 Pbxip1 ENSMUST00000146630 ENSMUSP00000115904 TRANSLATION protein_coding stop - 3 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0209 3 -2.0 MINOR ENSMUSG00000027863 Cd2 ENSMUST00000156103 - NO_TRANSLATION retained_intron ENSMUSG00000027863 Cd2 ENSMUST00000152321 - NO_TRANSLATION retained_intron ENSMUSG00000027863 Cd2 ENSMUST00000029456 ENSMUSP00000029456 TRANSLATION protein_coding - CCDS17681.1 1 344.0 0.0 3.0 0.4 91.4 0.0 2,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000045576 St7l ENSMUST00000123876 ENSMUSP00000138577 TRANSLATION protein_coding stop - 3 282.0 0.0 2.205 0.0 292.9 3.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000045576 St7l ENSMUST00000146237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045576 St7l ENSMUST00000183914 ENSMUSP00000139266 TRANSLATION nonsense_mediated_decay - - 5 121.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045576 St7l ENSMUST00000126775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045576 St7l ENSMUST00000140457 - NO_TRANSLATION retained_intron ENSMUSG00000045576 St7l ENSMUST00000106769 ENSMUSP00000102380 TRANSLATION protein_coding - CCDS57250.1 1 527.0 0.0 9.91 0.0 666.0 5.0 -4,-6 0.0512 3 4.002 MINOR ENSMUSG00000045576 St7l ENSMUST00000059271 ENSMUSP00000058455 TRANSLATION protein_coding - CCDS17705.1 1 559.0 0.0 10.91 6.2 962.3 5.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000045576 St7l ENSMUST00000197098 ENSMUSP00000142843 TRANSLATION protein_coding start/stop - 5 241.0 0.0 5.66 0.0 314.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000045576 St7l ENSMUST00000199186 - NO_TRANSLATION retained_intron ENSMUSG00000045576 St7l ENSMUST00000199335 ENSMUSP00000143583 TRANSLATION nonsense_mediated_decay start - 5 28.0 2.0 0.5 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000045576 St7l ENSMUST00000200132 ENSMUSP00000143759 TRANSLATION protein_coding - CCDS79994.1 1 481.0 0.0 9.08 0.7 815.3 5.0 -4,-6 0.0692 3 2.34 MINOR ENSMUSG00000068921 Dap3 ENSMUST00000107491 ENSMUSP00000103115 TRANSLATION protein_coding - CCDS50955.1 1 366.0 19.0 9.49 0.1 256.5 0.0 -4,0 0.0191 10 13.632 MINOR ENSMUSG00000068921 Dap3 ENSMUST00000172790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068921 Dap3 ENSMUST00000090938 ENSMUSP00000088456 TRANSLATION protein_coding - CCDS17486.2 1 396.0 19.0 10.49 1.5 296.0 0.0 -4,0 0.4949 11 18.136 MINOR ENSMUSG00000068921 Dap3 ENSMUST00000173094 ENSMUSP00000133486 TRANSLATION protein_coding start - 5 255.0 19.0 8.24 0.0 185.2 0.0 -4,-5 0.0007 7 -2.0 MINOR ENSMUSG00000068921 Dap3 ENSMUST00000174077 ENSMUSP00000134433 TRANSLATION protein_coding stop - 5 212.0 13.0 5.66 0.0 146.7 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000068921 Dap3 ENSMUST00000174402 ENSMUSP00000133395 TRANSLATION protein_coding stop - 5 165.0 13.0 4.5 0.0 100.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000068921 Dap3 ENSMUST00000174491 ENSMUSP00000134165 TRANSLATION protein_coding stop - 2 66.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000068921 Dap3 ENSMUST00000173021 ENSMUSP00000133314 TRANSLATION protein_coding stop - 5 200.0 13.0 5.33 0.0 131.1 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000068921 Dap3 ENSMUST00000174571 ENSMUSP00000133349 TRANSLATION protein_coding start - 3 217.0 16.0 6.75 0.0 144.8 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000068921 Dap3 ENSMUST00000188259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068921 Dap3 ENSMUST00000173711 - NO_TRANSLATION retained_intron ENSMUSG00000068921 Dap3 ENSMUST00000172942 ENSMUSP00000134145 TRANSLATION protein_coding stop - 5 133.0 12.0 2.58 0.0 84.7 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000068921 Dap3 ENSMUST00000173135 ENSMUSP00000134422 TRANSLATION protein_coding - - 5 391.0 19.0 10.49 15.8 296.0 0.0 -4,-1 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000027996 Sfrp2 ENSMUST00000140261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027996 Sfrp2 ENSMUST00000154794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027996 Sfrp2 ENSMUST00000029625 ENSMUSP00000029625 TRANSLATION protein_coding - CCDS17434.1 1 295.0 0.0 0.8085 11.4 151.4 0.0 2,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000007379 Dennd2c ENSMUST00000172288 ENSMUSP00000127187 TRANSLATION protein_coding - CCDS38572.2 1 920.0 0.0 7.1 0.4 294.8 0.0 -4,-7 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000007379 Dennd2c ENSMUST00000166143 - NO_TRANSLATION retained_intron ENSMUSG00000007379 Dennd2c ENSMUST00000174486 - NO_TRANSLATION retained_intron ENSMUSG00000007379 Dennd2c ENSMUST00000174060 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007379 Dennd2c ENSMUST00000173037 - NO_TRANSLATION retained_intron ENSMUSG00000007379 Dennd2c ENSMUST00000173206 ENSMUSP00000134008 TRANSLATION protein_coding - - 5 863.0 0.0 7.1 0.0 294.8 0.0 -4,-7 0.1303 1 8.0 ALTERNATIVE:2 ENSMUSG00000027883 Gpsm2 ENSMUST00000154263 - NO_TRANSLATION retained_intron ENSMUSG00000027883 Gpsm2 ENSMUST00000029482 ENSMUSP00000029482 TRANSLATION protein_coding - CCDS51048.1 1 679.0 0.0 9.4 7.8 270.8 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000027883 Gpsm2 ENSMUST00000124043 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027883 Gpsm2 ENSMUST00000145558 ENSMUSP00000115759 TRANSLATION protein_coding stop - 3 154.0 0.0 2.8 0.0 54.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027858 Tspan2 ENSMUST00000197345 ENSMUSP00000142543 TRANSLATION protein_coding start - 3 87.0 0.0 1.475 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027858 Tspan2 ENSMUST00000196611 ENSMUSP00000142964 TRANSLATION protein_coding - - 5 153.0 0.0 3.725 0.0 102.8 1.0 -3,-5 0.0 5 6.03 MINOR ENSMUSG00000027858 Tspan2 ENSMUST00000029451 ENSMUSP00000029451 TRANSLATION protein_coding - CCDS17688.1 1 221.0 0.0 5.445 20.2 145.0 3.0 -2,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000027858 Tspan2 ENSMUST00000119902 ENSMUSP00000113803 TRANSLATION protein_coding - CCDS57249.1 1 217.0 0.0 4.695 0.0 123.6 2.0 -4,-1 0.0697 5 9.216 MINOR ENSMUSG00000000339 Rtca ENSMUST00000153005 ENSMUSP00000119463 TRANSLATION protein_coding stop - 5 142.0 3.0 3.75 0.0 128.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000000339 Rtca ENSMUST00000143425 ENSMUSP00000121357 TRANSLATION nonsense_mediated_decay - - 3 113.0 9.0 2.7 0.0 116.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000339 Rtca ENSMUST00000124486 - NO_TRANSLATION retained_intron ENSMUSG00000000339 Rtca ENSMUST00000000348 ENSMUSP00000000348 TRANSLATION protein_coding - CCDS17786.1 1 366.0 17.0 10.33 28.2 385.8 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000000339 Rtca ENSMUST00000140677 ENSMUSP00000117610 TRANSLATION nonsense_mediated_decay - - 5 52.0 7.0 1.5 0.0 48.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028034 Fubp1 ENSMUST00000200056 ENSMUSP00000143686 TRANSLATION protein_coding start - 3 157.0 0.0 0.0 0.0 54.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028034 Fubp1 ENSMUST00000199202 ENSMUSP00000143204 TRANSLATION protein_coding stop - 1 306.0 0.0 6.58 0.0 130.5 0.0 -4,-5 0.001 12 -2.0 MINOR ENSMUSG00000028034 Fubp1 ENSMUST00000198405 ENSMUSP00000142990 TRANSLATION protein_coding start - 2 174.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000028034 Fubp1 ENSMUST00000198046 - NO_TRANSLATION retained_intron ENSMUSG00000028034 Fubp1 ENSMUST00000197141 - NO_TRANSLATION retained_intron ENSMUSG00000028034 Fubp1 ENSMUST00000199918 ENSMUSP00000142638 TRANSLATION protein_coding start - 2 142.0 0.0 0.0 0.0 54.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028034 Fubp1 ENSMUST00000200524 ENSMUSP00000143354 TRANSLATION protein_coding - - 1 654.0 0.0 10.2 3.9 299.9 0.0 -4,-5 0.6114 22 8.984 ALTERNATIVE:2 ENSMUSG00000028034 Fubp1 ENSMUST00000196429 ENSMUSP00000143478 TRANSLATION protein_coding start - 3 149.0 0.0 1.5 0.0 61.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028034 Fubp1 ENSMUST00000200207 - NO_TRANSLATION retained_intron ENSMUSG00000028034 Fubp1 ENSMUST00000106121 ENSMUSP00000101727 TRANSLATION protein_coding - CCDS38672.1 2 642.0 0.0 10.2 6.9 299.9 0.0 -4,-5 1.0 23 10.0 PRINCIPAL:4 ENSMUSG00000028034 Fubp1 ENSMUST00000198539 - NO_TRANSLATION retained_intron ENSMUSG00000028034 Fubp1 ENSMUST00000199127 - NO_TRANSLATION retained_intron ENSMUSG00000028034 Fubp1 ENSMUST00000196062 ENSMUSP00000143718 TRANSLATION nonsense_mediated_decay - - 2 69.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028034 Fubp1 ENSMUST00000199199 - NO_TRANSLATION retained_intron ENSMUSG00000028034 Fubp1 ENSMUST00000199876 ENSMUSP00000143618 TRANSLATION nonsense_mediated_decay - - 1 700.0 0.0 10.2 0.0 299.9 0.0 -4,-5 0.0331 22 -2.0 MINOR ENSMUSG00000028034 Fubp1 ENSMUST00000166984 ENSMUSP00000130145 TRANSLATION protein_coding - CCDS38672.1 1 642.0 0.0 10.2 6.9 299.9 0.0 -4,-5 1.0 23 10.0 PRINCIPAL:4 ENSMUSG00000028034 Fubp1 ENSMUST00000196739 ENSMUSP00000143101 TRANSLATION protein_coding - - 1 651.0 0.0 10.2 3.9 299.9 0.0 -4,-5 0.6192 22 8.984 ALTERNATIVE:2 ENSMUSG00000028034 Fubp1 ENSMUST00000198227 ENSMUSP00000143370 TRANSLATION protein_coding - - 1 523.0 0.0 10.2 0.0 245.5 0.0 -4,-5 0.0324 21 7.8 MINOR ENSMUSG00000028034 Fubp1 ENSMUST00000200452 ENSMUSP00000143019 TRANSLATION nonsense_mediated_decay - CCDS38672.1 2 642.0 0.0 10.2 6.9 299.9 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000028034 Fubp1 ENSMUST00000196695 ENSMUSP00000143729 TRANSLATION protein_coding - - 1 643.0 0.0 10.2 6.8 299.9 0.0 -4,-5 0.8325 23 9.966 ALTERNATIVE:1 ENSMUSG00000109293 Dcst2 ENSMUST00000208216 ENSMUSP00000146838 TRANSLATION protein_coding - - 5 701.0 8.0 0.0 0.0 186.1 0.0 -4,-7 0.7758 - 12.0 PRINCIPAL:1 ENSMUSG00000078742 Gm10985 ENSMUST00000108014 ENSMUSP00000103649 TRANSLATION protein_coding start/stop - 5 27.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.628 - -2.0 PRINCIPAL:1 ENSMUSG00000027770 Dhx36 ENSMUST00000029336 ENSMUSP00000029336 TRANSLATION protein_coding - CCDS17379.1 1 1001.0 8.0 20.5 2.6 240.5 0.0 -4,-5 1.0 17 19.0 PRINCIPAL:1 ENSMUSG00000027770 Dhx36 ENSMUST00000160858 - NO_TRANSLATION retained_intron ENSMUSG00000027770 Dhx36 ENSMUST00000162070 - NO_TRANSLATION retained_intron ENSMUSG00000027770 Dhx36 ENSMUST00000192223 - NO_TRANSLATION retained_intron ENSMUSG00000090202 4930503B20Rik ENSMUST00000049703 ENSMUSP00000051453 TRANSLATION protein_coding - CCDS38667.1 1 234.0 0.0 0.6 0.0 93.9 0.0 -4,-2 0.6649 - 8.0 ALTERNATIVE:2 ENSMUSG00000090202 4930503B20Rik ENSMUST00000149825 ENSMUSP00000114745 TRANSLATION protein_coding - - 1 231.0 0.0 0.6 0.0 93.9 0.0 -4,-2 0.7879 - 8.0 PRINCIPAL:4 ENSMUSG00000090202 4930503B20Rik ENSMUST00000126930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074212 Dnajb14 ENSMUST00000125226 - NO_TRANSLATION retained_intron ENSMUSG00000074212 Dnajb14 ENSMUST00000197711 ENSMUSP00000143194 TRANSLATION protein_coding stop - 5 124.0 0.0 1.75 0.0 93.5 0.0 -4,-6 0.0005 4 -2.0 MINOR ENSMUSG00000074212 Dnajb14 ENSMUST00000195903 - NO_TRANSLATION retained_intron ENSMUSG00000074212 Dnajb14 ENSMUST00000090178 ENSMUSP00000087641 TRANSLATION protein_coding - CCDS51077.1 1 379.0 0.0 2.0 26.7 180.2 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000002228 Ppm1j ENSMUST00000002298 ENSMUSP00000002298 TRANSLATION protein_coding - CCDS17703.1 1 507.0 5.0 5.182 6.9 82.6 0.0 -3,1 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000002228 Ppm1j ENSMUST00000197264 - NO_TRANSLATION retained_intron ENSMUSG00000040774 Cept1 ENSMUST00000192438 ENSMUSP00000142097 TRANSLATION protein_coding stop - 5 247.0 0.0 5.75 0.0 66.7 11.0 -4,-7 0.0274 2 -2.0 MINOR ENSMUSG00000040774 Cept1 ENSMUST00000148269 ENSMUSP00000118343 TRANSLATION protein_coding stop - 2 178.0 0.0 3.9 0.0 66.7 7.0 -4,-7 0.0182 1 -2.0 MINOR ENSMUSG00000040774 Cept1 ENSMUST00000141525 ENSMUSP00000122460 TRANSLATION protein_coding stop - 2 60.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000040774 Cept1 ENSMUST00000039153 ENSMUSP00000037277 TRANSLATION protein_coding - CCDS79995.1 1 416.0 0.0 9.73 21.8 66.7 16.0 -4,-7 0.9877 2 9.298 ALTERNATIVE:1 ENSMUSG00000040774 Cept1 ENSMUST00000068301 ENSMUSP00000065743 TRANSLATION protein_coding - CCDS17723.1 1 416.0 0.0 10.08 21.8 66.7 17.0 -4,-7 1.0 2 10.0 PRINCIPAL:4 ENSMUSG00000040774 Cept1 ENSMUST00000121231 ENSMUSP00000112509 TRANSLATION protein_coding - CCDS17723.1 5 416.0 0.0 10.08 21.8 66.7 17.0 -4,-7 1.0 2 10.0 PRINCIPAL:4 ENSMUSG00000040774 Cept1 ENSMUST00000137530 ENSMUSP00000115898 TRANSLATION nonsense_mediated_decay - - 5 50.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000027761 Aadac ENSMUST00000151605 - NO_TRANSLATION retained_intron ENSMUSG00000027761 Aadac ENSMUST00000029325 ENSMUSP00000029325 TRANSLATION protein_coding - CCDS17375.1 1 398.0 3.0 4.75 12.6 26.7 0.0 -2,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000027761 Aadac ENSMUST00000194896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056900 Usp13 ENSMUST00000108228 ENSMUSP00000103863 TRANSLATION protein_coding - - 1 857.0 4.0 12.545 12.3 298.9 0.0 -4,-7 0.8471 9 15.4 ALTERNATIVE:1 ENSMUSG00000056900 Usp13 ENSMUST00000172481 ENSMUSP00000133823 TRANSLATION nonsense_mediated_decay - - 5 534.0 4.0 6.115 0.0 126.9 0.0 -4,-2 0.0004 5 -2.0 MINOR ENSMUSG00000056900 Usp13 ENSMUST00000156769 ENSMUSP00000117605 TRANSLATION protein_coding start - 5 188.0 0.0 3.35 0.0 113.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000056900 Usp13 ENSMUST00000072312 ENSMUSP00000072155 TRANSLATION protein_coding - CCDS17301.1 1 858.0 4.0 12.545 14.3 298.9 0.0 -4,-2 1.0 9 16.0 PRINCIPAL:4 ENSMUSG00000048655 Ccdc169 ENSMUST00000161120 ENSMUSP00000125131 TRANSLATION nonsense_mediated_decay - - 2 82.0 0.0 2.33 0.0 106.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048655 Ccdc169 ENSMUST00000061099 ENSMUSP00000054771 TRANSLATION protein_coding - CCDS17357.2 5 214.0 0.0 4.805 6.7 185.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048655 Ccdc169 ENSMUST00000153009 ENSMUSP00000119909 TRANSLATION protein_coding stop - 1 37.0 0.0 1.33 0.0 44.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048655 Ccdc169 ENSMUST00000052904 ENSMUSP00000049698 TRANSLATION protein_coding - CCDS79907.1 1 132.0 0.0 2.705 0.7 130.7 0.0 -4,-6 0.0051 - 4.518 MINOR ENSMUSG00000048655 Ccdc169 ENSMUST00000159904 ENSMUSP00000123900 TRANSLATION nonsense_mediated_decay - - 2 82.0 0.0 2.33 0.0 106.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048655 Ccdc169 ENSMUST00000118963 ENSMUSP00000112414 TRANSLATION protein_coding - - 3 207.0 0.0 4.805 0.0 185.4 0.0 -4,-5 0.0361 - 12.0 MINOR ENSMUSG00000074264 Amy1 ENSMUST00000142505 ENSMUSP00000120493 TRANSLATION protein_coding stop - 5 272.0 26.0 5.5 0.0 43.9 0.0 4,-1 0.001 7 -2.0 MINOR ENSMUSG00000074264 Amy1 ENSMUST00000067980 ENSMUSP00000070368 TRANSLATION protein_coding - CCDS17776.1 1 511.0 44.0 11.25 32.4 113.2 0.0 4,-1 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000074264 Amy1 ENSMUST00000174147 ENSMUSP00000133875 TRANSLATION protein_coding stop - 2 131.0 7.0 2.75 0.0 0.0 0.0 4,-1 0.0007 2 -2.0 MINOR ENSMUSG00000074264 Amy1 ENSMUST00000106540 ENSMUSP00000102150 TRANSLATION protein_coding - CCDS17776.1 1 511.0 44.0 11.25 32.4 113.2 0.0 4,-1 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000074264 Amy1 ENSMUST00000172885 - NO_TRANSLATION retained_intron ENSMUSG00000027710 Acad9 ENSMUST00000198987 - NO_TRANSLATION retained_intron ENSMUSG00000027710 Acad9 ENSMUST00000196535 - NO_TRANSLATION retained_intron ENSMUSG00000027710 Acad9 ENSMUST00000199193 - NO_TRANSLATION retained_intron ENSMUSG00000027710 Acad9 ENSMUST00000011492 ENSMUSP00000011492 TRANSLATION protein_coding - CCDS17310.1 1 625.0 30.0 15.73 4.8 306.4 0.0 -2,2 1.0 26 20.0 PRINCIPAL:1 ENSMUSG00000027710 Acad9 ENSMUST00000196648 ENSMUSP00000142557 TRANSLATION protein_coding - - 3 157.0 0.0 3.4 0.0 51.4 0.0 -2,2 0.0 3 0.0 MINOR ENSMUSG00000027710 Acad9 ENSMUST00000198050 - NO_TRANSLATION retained_intron ENSMUSG00000027710 Acad9 ENSMUST00000197344 - NO_TRANSLATION retained_intron ENSMUSG00000027710 Acad9 ENSMUST00000197588 ENSMUSP00000142995 TRANSLATION nonsense_mediated_decay start - 5 160.0 13.0 4.448 0.0 119.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000027710 Acad9 ENSMUST00000195896 - NO_TRANSLATION retained_intron ENSMUSG00000027710 Acad9 ENSMUST00000196395 - NO_TRANSLATION retained_intron ENSMUSG00000028184 Adgrl2 ENSMUST00000098518 - NO_TRANSLATION retained_intron ENSMUSG00000028184 Adgrl2 ENSMUST00000200154 ENSMUSP00000142865 TRANSLATION protein_coding - - 5 1123.0 0.0 13.308 0.0 893.9 14.0 1,0 0.0938 18 4.272 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000198779 ENSMUSP00000142347 TRANSLATION protein_coding - - 5 1452.0 0.0 13.808 0.1 1377.3 14.0 1,0 0.221 20 8.676 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000199238 ENSMUSP00000142405 TRANSLATION protein_coding - - 5 1478.0 0.0 14.008 4.0 1417.6 14.0 1,0 0.6851 20 12.378 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000200023 - NO_TRANSLATION retained_intron ENSMUSG00000028184 Adgrl2 ENSMUST00000200216 ENSMUSP00000142505 TRANSLATION protein_coding start - 3 79.0 0.0 0.0 0.0 108.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000199059 ENSMUSP00000143150 TRANSLATION protein_coding - - 5 1467.0 0.0 14.008 0.1 1371.3 14.0 1,0 0.2497 20 8.718 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000198139 ENSMUSP00000143511 TRANSLATION protein_coding start - 1 471.0 0.0 1.398 0.0 589.4 9.0 -4,-7 0.0075 3 -2.0 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000196526 ENSMUSP00000143788 TRANSLATION protein_coding - - 5 1177.0 0.0 13.308 4.0 982.3 14.0 1,0 0.2846 18 5.154 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000198563 - NO_TRANSLATION retained_intron ENSMUSG00000028184 Adgrl2 ENSMUST00000168352 ENSMUSP00000132116 TRANSLATION protein_coding - - 1 239.0 0.0 0.0 0.0 307.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000195988 ENSMUSP00000143444 TRANSLATION protein_coding - - 5 1435.0 0.0 14.008 2.9 1208.4 14.0 1,0 0.347 21 6.228 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000199750 ENSMUSP00000143320 TRANSLATION protein_coding - - 5 1341.0 0.0 13.308 3.6 1217.0 14.0 1,0 0.3143 20 5.036 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000197521 - NO_TRANSLATION retained_intron ENSMUSG00000028184 Adgrl2 ENSMUST00000200543 ENSMUSP00000142336 TRANSLATION protein_coding - - 5 1403.0 0.0 13.308 7.8 1217.0 14.0 1,0 0.5916 22 6.272 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000200456 ENSMUSP00000142371 TRANSLATION protein_coding start - 3 138.0 0.0 0.398 0.0 169.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000197925 ENSMUSP00000143760 TRANSLATION protein_coding start/stop - 3 264.0 0.0 2.608 0.0 299.8 11.0 -2,-4 0.0024 1 -2.0 MINOR ENSMUSG00000028184 Adgrl2 ENSMUST00000197567 ENSMUSP00000143626 TRANSLATION protein_coding - CCDS80059.1 2 1487.0 0.0 14.173 6.3 1420.5 14.0 1,0 1.0 20 13.558 PRINCIPAL:1 ENSMUSG00000028184 Adgrl2 ENSMUST00000197348 ENSMUSP00000142618 TRANSLATION protein_coding start - 3 196.0 0.0 2.128 0.0 204.8 10.0 -2,-5 0.0024 - -2.0 MINOR ENSMUSG00000039167 Adgrl4 ENSMUST00000196970 ENSMUSP00000143744 TRANSLATION protein_coding stop - 3 181.0 7.0 2.098 0.0 38.2 0.0 3,-2 0.0004 - -2.0 MINOR ENSMUSG00000039167 Adgrl4 ENSMUST00000238194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039167 Adgrl4 ENSMUST00000238382 - NO_TRANSLATION retained_intron ENSMUSG00000039167 Adgrl4 ENSMUST00000238268 ENSMUSP00000158762 TRANSLATION nonsense_mediated_decay start - - 20.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039167 Adgrl4 ENSMUST00000155652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039167 Adgrl4 ENSMUST00000046977 ENSMUSP00000041939 TRANSLATION protein_coding - CCDS17910.1 1 739.0 7.0 6.344 8.9 463.5 0.0 3,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000039167 Adgrl4 ENSMUST00000198893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039167 Adgrl4 ENSMUST00000141038 - NO_TRANSLATION retained_intron ENSMUSG00000039167 Adgrl4 ENSMUST00000129283 ENSMUSP00000158710 TRANSLATION nonsense_mediated_decay start - 3 91.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028073 Pear1 ENSMUST00000173468 ENSMUSP00000133988 TRANSLATION nonsense_mediated_decay - - 5 218.0 0.0 2.728 0.0 55.0 0.0 2,-2 0.0012 2 -2.0 MINOR ENSMUSG00000028073 Pear1 ENSMUST00000174776 ENSMUSP00000133749 TRANSLATION protein_coding stop - 3 120.0 0.0 1.248 0.0 55.0 0.0 2,-2 0.0012 1 -2.0 MINOR ENSMUSG00000028073 Pear1 ENSMUST00000174267 ENSMUSP00000133626 TRANSLATION nonsense_mediated_decay - - 1 68.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.004 - -2.0 MINOR ENSMUSG00000028073 Pear1 ENSMUST00000173490 - NO_TRANSLATION retained_intron ENSMUSG00000028073 Pear1 ENSMUST00000173747 - NO_TRANSLATION retained_intron ENSMUSG00000028073 Pear1 ENSMUST00000079083 ENSMUSP00000078090 TRANSLATION protein_coding - CCDS38474.1 5 1034.0 4.0 13.564 0.0 170.0 2.0 2,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000028073 Pear1 ENSMUST00000174713 ENSMUSP00000134215 TRANSLATION nonsense_mediated_decay - - 1 67.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.004 - -2.0 MINOR ENSMUSG00000028073 Pear1 ENSMUST00000172621 ENSMUSP00000133474 TRANSLATION protein_coding - CCDS38474.1 1 1034.0 4.0 13.564 0.0 170.0 2.0 2,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000028073 Pear1 ENSMUST00000174759 ENSMUSP00000133323 TRANSLATION protein_coding - CCDS38474.1 1 1034.0 4.0 13.564 0.0 170.0 2.0 2,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000028073 Pear1 ENSMUST00000173184 ENSMUSP00000134100 TRANSLATION protein_coding stop - 3 95.0 0.0 0.518 0.0 55.0 0.0 2,-2 0.0012 - -2.0 MINOR ENSMUSG00000028073 Pear1 ENSMUST00000173225 ENSMUSP00000134387 TRANSLATION nonsense_mediated_decay - - 3 67.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.004 - -2.0 MINOR ENSMUSG00000028073 Pear1 ENSMUST00000172669 ENSMUSP00000134451 TRANSLATION nonsense_mediated_decay start - 3 193.0 4.0 2.456 0.0 59.6 2.0 -3,-4 0.0005 - -2.0 MINOR ENSMUSG00000028073 Pear1 ENSMUST00000172590 ENSMUSP00000133480 TRANSLATION protein_coding stop - 2 50.0 0.0 1.73 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000028073 Pear1 ENSMUST00000174219 ENSMUSP00000133565 TRANSLATION nonsense_mediated_decay start - 5 96.0 0.0 1.396 0.0 21.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028073 Pear1 ENSMUST00000172631 - NO_TRANSLATION retained_intron ENSMUSG00000027660 Skil ENSMUST00000117728 ENSMUSP00000113054 TRANSLATION protein_coding - CCDS71230.1 1 549.0 4.0 2.0 0.0 271.5 0.0 -4,-6 0.2091 5 12.0 ALTERNATIVE:2 ENSMUSG00000027660 Skil ENSMUST00000118470 ENSMUSP00000113256 TRANSLATION protein_coding - CCDS50886.1 1 629.0 4.0 2.0 1.4 271.5 0.0 -4,-5 0.4766 6 12.222 ALTERNATIVE:2 ENSMUSG00000027660 Skil ENSMUST00000118204 ENSMUSP00000112413 TRANSLATION protein_coding - CCDS38408.1 1 675.0 4.0 2.0 2.8 271.5 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:2 ENSMUSG00000027660 Skil ENSMUST00000029194 ENSMUSP00000029194 TRANSLATION protein_coding - CCDS38408.1 5 675.0 4.0 2.0 2.8 271.5 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:2 ENSMUSG00000027660 Skil ENSMUST00000123532 ENSMUSP00000123522 TRANSLATION protein_coding stop - 2 187.0 0.0 1.0 0.0 72.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027660 Skil ENSMUST00000144756 - NO_TRANSLATION retained_intron ENSMUSG00000028262 Clca3a2 ENSMUST00000159643 - NO_TRANSLATION retained_intron ENSMUSG00000028262 Clca3a2 ENSMUST00000197013 ENSMUSP00000143332 TRANSLATION protein_coding start/stop - 3 254.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028262 Clca3a2 ENSMUST00000199029 ENSMUSP00000143543 TRANSLATION protein_coding start - 2 189.0 0.0 0.0 0.0 0.0 0.0 -3,-7 0.0001 - -2.0 MINOR ENSMUSG00000028262 Clca3a2 ENSMUST00000029929 ENSMUSP00000029929 TRANSLATION protein_coding - CCDS17887.1 1 902.0 6.0 7.5 2.3 507.7 0.0 4,-1 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000015745 Plekho1 ENSMUST00000123006 ENSMUSP00000118665 TRANSLATION protein_coding start - 5 365.0 0.0 0.972 0.0 49.7 0.0 -4,-5 0.0241 9 -2.0 MINOR ENSMUSG00000015745 Plekho1 ENSMUST00000143485 ENSMUSP00000114505 TRANSLATION protein_coding stop - 3 124.0 0.0 0.807 0.0 49.7 0.0 -4,-7 0.0162 2 -2.0 MINOR ENSMUSG00000015745 Plekho1 ENSMUST00000130043 ENSMUSP00000115035 TRANSLATION protein_coding start/stop - 2 262.0 0.0 1.972 0.0 49.7 0.0 -4,-6 0.0173 3 -2.0 MINOR ENSMUSG00000015745 Plekho1 ENSMUST00000015889 ENSMUSP00000015889 TRANSLATION protein_coding - CCDS17627.1 1 408.0 0.0 1.972 6.6 49.7 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000015745 Plekho1 ENSMUST00000157043 - NO_TRANSLATION retained_intron ENSMUSG00000041263 Rusc1 ENSMUST00000090929 ENSMUSP00000088447 TRANSLATION protein_coding - CCDS38486.1 1 1030.0 0.0 5.5 0.4 109.5 0.0 -4,-2 0.5504 10 12.0 MINOR ENSMUSG00000041263 Rusc1 ENSMUST00000200357 - NO_TRANSLATION retained_intron ENSMUSG00000041263 Rusc1 ENSMUST00000196223 ENSMUSP00000143662 TRANSLATION protein_coding stop - 2 167.0 0.0 4.7 0.0 62.0 0.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000041263 Rusc1 ENSMUST00000198506 - NO_TRANSLATION retained_intron ENSMUSG00000041263 Rusc1 ENSMUST00000052539 ENSMUSP00000056640 TRANSLATION protein_coding - CCDS38485.1 1 893.0 0.0 5.5 0.1 109.5 0.0 -4,-2 0.4225 10 12.0 MINOR ENSMUSG00000041263 Rusc1 ENSMUST00000166687 ENSMUSP00000130477 TRANSLATION protein_coding - CCDS50956.1 1 431.0 0.0 5.5 7.2 109.5 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000041263 Rusc1 ENSMUST00000196043 ENSMUSP00000142622 TRANSLATION protein_coding stop - 5 79.0 0.0 1.95 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000096569 Amy2a2 ENSMUST00000098667 ENSMUSP00000096264 TRANSLATION protein_coding - CCDS51056.1 1 508.0 44.0 10.0 29.4 118.1 0.0 4,-1 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000027963 Extl2 ENSMUST00000149920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027963 Extl2 ENSMUST00000128228 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027963 Extl2 ENSMUST00000106501 ENSMUSP00000102110 TRANSLATION protein_coding - CCDS51057.1 1 316.0 24.0 2.75 5.2 289.8 0.0 2,-3 0.4873 2 18.884 MINOR ENSMUSG00000027963 Extl2 ENSMUST00000029575 ENSMUSP00000029575 TRANSLATION protein_coding - CCDS17784.1 1 330.0 24.0 2.75 20.0 289.8 0.0 -1,-4 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000027963 Extl2 ENSMUST00000106502 ENSMUSP00000102111 TRANSLATION protein_coding - CCDS17784.1 1 330.0 24.0 2.75 20.0 289.8 0.0 -1,-4 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000027963 Extl2 ENSMUST00000145945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033285 Wdr3 ENSMUST00000135812 - NO_TRANSLATION retained_intron ENSMUSG00000033285 Wdr3 ENSMUST00000125059 ENSMUSP00000135731 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 0.25 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000033285 Wdr3 ENSMUST00000197602 ENSMUSP00000143010 TRANSLATION nonsense_mediated_decay - - 3 61.0 0.0 0.25 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000033285 Wdr3 ENSMUST00000052120 ENSMUSP00000060613 TRANSLATION protein_coding - CCDS17674.1 1 942.0 0.0 14.405 18.5 247.4 0.0 -4,-2 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000033285 Wdr3 ENSMUST00000146989 - NO_TRANSLATION retained_intron ENSMUSG00000033285 Wdr3 ENSMUST00000129319 - NO_TRANSLATION retained_intron ENSMUSG00000043020 Dnai3 ENSMUST00000162572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043020 Dnai3 ENSMUST00000160285 ENSMUSP00000124475 TRANSLATION protein_coding - CCDS17899.2 1 923.0 0.0 2.445 0.4 0.0 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000043020 Dnai3 ENSMUST00000161104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055301 Adh7 ENSMUST00000196133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055301 Adh7 ENSMUST00000090171 ENSMUSP00000087633 TRANSLATION protein_coding - CCDS38651.1 1 374.0 32.0 7.41 30.0 73.5 0.0 -4,-7 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000055301 Adh7 ENSMUST00000199865 - NO_TRANSLATION retained_intron ENSMUSG00000027854 Sike1 ENSMUST00000119450 ENSMUSP00000112886 TRANSLATION protein_coding - - 3 124.0 0.0 1.0 0.0 114.9 0.0 -4,-5 0.0 7 1.998 MINOR ENSMUSG00000027854 Sike1 ENSMUST00000196827 - NO_TRANSLATION retained_intron ENSMUSG00000027854 Sike1 ENSMUST00000029447 ENSMUSP00000029447 TRANSLATION protein_coding - CCDS17690.1 1 207.0 0.0 3.0 14.8 225.5 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000027854 Sike1 ENSMUST00000197601 ENSMUSP00000143074 TRANSLATION nonsense_mediated_decay start - 3 83.0 0.0 2.0 0.0 91.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027854 Sike1 ENSMUST00000137332 - NO_TRANSLATION retained_intron ENSMUSG00000027854 Sike1 ENSMUST00000151065 - NO_TRANSLATION retained_intron ENSMUSG00000027677 Ttc14 ENSMUST00000196139 ENSMUSP00000143173 TRANSLATION protein_coding stop - 3 217.0 0.0 1.75 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000027677 Ttc14 ENSMUST00000196369 ENSMUSP00000142863 TRANSLATION nonsense_mediated_decay start - 1 336.0 0.0 7.632 0.0 17.2 0.0 -4,-5 0.0156 4 -2.0 MINOR ENSMUSG00000027677 Ttc14 ENSMUST00000199523 - NO_TRANSLATION retained_intron ENSMUSG00000027677 Ttc14 ENSMUST00000200559 - NO_TRANSLATION retained_intron ENSMUSG00000027677 Ttc14 ENSMUST00000196975 ENSMUSP00000142684 TRANSLATION protein_coding - - 1 386.0 0.0 6.632 0.0 17.2 0.0 -4,-7 0.0165 4 7.944 MINOR ENSMUSG00000027677 Ttc14 ENSMUST00000198529 ENSMUSP00000143073 TRANSLATION protein_coding stop - 1 408.0 0.0 6.83 0.0 15.3 0.0 -4,-7 0.0063 5 -2.0 MINOR ENSMUSG00000027677 Ttc14 ENSMUST00000199222 ENSMUSP00000142935 TRANSLATION nonsense_mediated_decay - - 1 433.0 0.0 7.5 1.1 17.2 0.0 -4,-7 0.233 5 -2.0 MINOR ENSMUSG00000027677 Ttc14 ENSMUST00000200271 ENSMUSP00000143738 TRANSLATION protein_coding - CCDS79895.1 1 435.0 0.0 7.632 0.0 17.2 0.0 -4,0 0.1021 4 9.942 MINOR ENSMUSG00000027677 Ttc14 ENSMUST00000197592 - NO_TRANSLATION retained_intron ENSMUSG00000027677 Ttc14 ENSMUST00000099153 ENSMUSP00000096757 TRANSLATION protein_coding - CCDS17303.1 1 438.0 0.0 7.632 2.1 17.2 0.0 -4,-7 0.5605 5 10.942 MINOR ENSMUSG00000027677 Ttc14 ENSMUST00000108210 ENSMUSP00000103845 TRANSLATION protein_coding - CCDS38410.1 5 766.0 0.0 8.66 1.6 17.2 0.0 -4,-7 1.0 7 12.545 PRINCIPAL:1 ENSMUSG00000027677 Ttc14 ENSMUST00000117915 ENSMUSP00000112450 TRANSLATION protein_coding - CCDS71232.1 1 714.0 0.0 7.66 0.1 17.2 0.0 -4,-7 0.1785 6 10.002 MINOR ENSMUSG00000043165 Lor ENSMUST00000058150 ENSMUSP00000052128 TRANSLATION protein_coding - CCDS17546.1 1 486.0 0.0 0.0 0.0 40.9 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000028044 Cks1b ENSMUST00000029679 ENSMUSP00000029679 TRANSLATION protein_coding - CCDS38493.1 1 79.0 0.0 2.5 36.2 131.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028044 Cks1b ENSMUST00000183484 ENSMUSP00000138900 TRANSLATION nonsense_mediated_decay - - 3 54.0 0.0 0.75 0.0 25.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028044 Cks1b ENSMUST00000107422 ENSMUSP00000103045 TRANSLATION protein_coding - - 2 57.0 0.0 1.75 0.0 90.0 0.0 -4,-5 0.0 - 7.716 MINOR ENSMUSG00000034009 Rxfp1 ENSMUST00000183040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034009 Rxfp1 ENSMUST00000078527 ENSMUSP00000077611 TRANSLATION protein_coding - CCDS17420.1 1 758.0 4.0 8.93 12.3 227.8 0.0 2,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000034009 Rxfp1 ENSMUST00000183199 - NO_TRANSLATION retained_intron ENSMUSG00000034009 Rxfp1 ENSMUST00000182491 ENSMUSP00000138578 TRANSLATION nonsense_mediated_decay - - 1 102.0 4.0 1.1 0.0 32.3 0.0 2,-2 0.0018 - -2.0 MINOR ENSMUSG00000027792 Bche ENSMUST00000153917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027792 Bche ENSMUST00000029367 ENSMUSP00000029367 TRANSLATION protein_coding - CCDS17411.1 1 603.0 6.0 4.0 3.6 657.7 0.0 1,-3 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000027792 Bche ENSMUST00000133690 - NO_TRANSLATION retained_intron ENSMUSG00000027792 Bche ENSMUST00000138216 ENSMUSP00000141329 TRANSLATION protein_coding stop - 2 174.0 2.0 1.0 0.0 176.1 0.0 1,-3 0.0009 - -2.0 MINOR ENSMUSG00000028093 Acp6 ENSMUST00000133965 - NO_TRANSLATION retained_intron ENSMUSG00000028093 Acp6 ENSMUST00000143234 - NO_TRANSLATION retained_intron ENSMUSG00000028093 Acp6 ENSMUST00000090759 ENSMUSP00000088263 TRANSLATION protein_coding - CCDS17653.1 1 418.0 6.0 9.3 0.4 91.1 0.0 -2,0 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000028093 Acp6 ENSMUST00000198329 - NO_TRANSLATION retained_intron ENSMUSG00000028093 Acp6 ENSMUST00000149900 - NO_TRANSLATION retained_intron ENSMUSG00000028093 Acp6 ENSMUST00000146143 - NO_TRANSLATION retained_intron ENSMUSG00000028093 Acp6 ENSMUST00000126438 - NO_TRANSLATION retained_intron ENSMUSG00000028093 Acp6 ENSMUST00000199346 - NO_TRANSLATION retained_intron ENSMUSG00000028093 Acp6 ENSMUST00000139898 - NO_TRANSLATION retained_intron ENSMUSG00000050315 Synpo2 ENSMUST00000051443 ENSMUSP00000051570 TRANSLATION protein_coding - - - 702.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0075 20 0.0 MINOR ENSMUSG00000050315 Synpo2 ENSMUST00000106426 ENSMUSP00000102034 TRANSLATION protein_coding - CCDS51063.1 1 1257.0 0.0 1.4 0.1 41.1 0.0 -4,-5 1.0 41 8.0 PRINCIPAL:2 ENSMUSG00000050315 Synpo2 ENSMUST00000184590 ENSMUSP00000142426 TRANSLATION protein_coding start - 1 185.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 4 -2.0 MINOR ENSMUSG00000050315 Synpo2 ENSMUST00000184403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050315 Synpo2 ENSMUST00000198584 ENSMUSP00000142508 TRANSLATION protein_coding - - 5 1087.0 0.0 1.4 0.0 41.1 0.0 -4,-5 0.259 31 8.0 ALTERNATIVE:2 ENSMUSG00000050315 Synpo2 ENSMUST00000106427 ENSMUSP00000102035 TRANSLATION protein_coding - - 5 1198.0 0.0 1.4 0.0 41.1 0.0 -4,-5 0.3022 41 8.0 ALTERNATIVE:2 ENSMUSG00000050315 Synpo2 ENSMUST00000139160 ENSMUSP00000123396 TRANSLATION protein_coding start - 3 216.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 13 -2.0 MINOR ENSMUSG00000004127 Trmt10a ENSMUST00000162864 ENSMUSP00000125749 TRANSLATION protein_coding - - 1 328.0 18.0 5.0 1.8 105.5 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000004127 Trmt10a ENSMUST00000040321 ENSMUSP00000042082 TRANSLATION protein_coding - - 1 328.0 18.0 5.0 1.8 105.5 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000004127 Trmt10a ENSMUST00000161791 - NO_TRANSLATION retained_intron ENSMUSG00000004127 Trmt10a ENSMUST00000159622 ENSMUSP00000130478 TRANSLATION protein_coding stop - 5 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004127 Trmt10a ENSMUST00000161141 ENSMUSP00000125681 TRANSLATION protein_coding stop - 3 163.0 0.0 2.4 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004127 Trmt10a ENSMUST00000159481 ENSMUSP00000124465 TRANSLATION protein_coding stop - 3 98.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037652 Phc3 ENSMUST00000177992 ENSMUSP00000136820 TRANSLATION protein_coding - CCDS50884.1 5 948.0 4.0 2.8 0.0 54.6 0.0 -4,-5 0.2776 9 12.0 ALTERNATIVE:2 ENSMUSG00000037652 Phc3 ENSMUST00000064718 ENSMUSP00000065617 TRANSLATION protein_coding - CCDS50885.1 1 951.0 4.0 2.8 0.0 54.6 0.0 -4,-5 0.3059 8 12.0 ALTERNATIVE:2 ENSMUSG00000037652 Phc3 ENSMUST00000124472 - NO_TRANSLATION retained_intron ENSMUSG00000037652 Phc3 ENSMUST00000152357 ENSMUSP00000117614 TRANSLATION nonsense_mediated_decay - - 1 232.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 1 -2.0 MINOR ENSMUSG00000037652 Phc3 ENSMUST00000129817 ENSMUSP00000114916 TRANSLATION protein_coding - CCDS17288.1 1 981.0 4.0 2.8 2.0 54.6 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:2 ENSMUSG00000037652 Phc3 ENSMUST00000108255 ENSMUSP00000103890 TRANSLATION protein_coding - CCDS50884.1 1 948.0 4.0 2.8 0.0 54.6 0.0 -4,-5 0.2776 9 12.0 ALTERNATIVE:2 ENSMUSG00000037652 Phc3 ENSMUST00000150939 - NO_TRANSLATION retained_intron ENSMUSG00000037652 Phc3 ENSMUST00000168645 ENSMUSP00000130142 TRANSLATION protein_coding - CCDS17288.1 1 981.0 4.0 2.8 2.0 54.6 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:2 ENSMUSG00000037652 Phc3 ENSMUST00000046624 ENSMUSP00000037862 TRANSLATION nonsense_mediated_decay - - 5 595.0 0.0 0.0 1.0 0.0 0.0 -4,-5 0.0562 2 -2.0 MINOR ENSMUSG00000037652 Phc3 ENSMUST00000099163 ENSMUSP00000096767 TRANSLATION protein_coding - - 1 715.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0038 4 0.858 MINOR ENSMUSG00000014599 Csf1 ENSMUST00000156820 ENSMUSP00000119553 TRANSLATION protein_coding start/stop - 3 278.0 0.0 1.5 0.0 103.6 0.0 -4,-6 0.0002 - -2.0 MINOR ENSMUSG00000014599 Csf1 ENSMUST00000153114 ENSMUSP00000115480 TRANSLATION protein_coding stop - 2 182.0 0.0 3.5 0.0 253.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000014599 Csf1 ENSMUST00000014743 ENSMUSP00000014743 TRANSLATION protein_coding - CCDS17740.1 1 552.0 0.0 4.25 6.4 306.5 1.0 3,-3 0.8208 2 9.964 PRINCIPAL:3 ENSMUSG00000014599 Csf1 ENSMUST00000118593 ENSMUSP00000113136 TRANSLATION protein_coding - CCDS51044.1 1 257.0 0.0 4.25 6.5 306.5 1.0 3,-3 1.0 1 10.0 ALTERNATIVE:1 ENSMUSG00000014599 Csf1 ENSMUST00000120654 ENSMUSP00000112832 TRANSLATION protein_coding - - 3 163.0 0.0 1.5 0.0 103.6 1.0 -4,-5 0.0023 - 0.498 MINOR ENSMUSG00000014599 Csf1 ENSMUST00000155557 - NO_TRANSLATION retained_intron ENSMUSG00000014599 Csf1 ENSMUST00000120243 ENSMUSP00000113617 TRANSLATION protein_coding - CCDS17740.1 1 552.0 0.0 4.25 6.4 306.5 1.0 3,-3 0.8208 2 9.964 PRINCIPAL:3 ENSMUSG00000037892 Pcdh18 ENSMUST00000035931 ENSMUSP00000039245 TRANSLATION protein_coding - CCDS17334.1 1 1134.0 55.0 1.4 10.7 315.5 2.0 3,-1 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000037892 Pcdh18 ENSMUST00000195086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037892 Pcdh18 ENSMUST00000193600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037892 Pcdh18 ENSMUST00000194603 ENSMUSP00000142135 TRANSLATION protein_coding start - 1 455.0 15.0 0.4 0.0 96.5 2.0 -4,-5 0.0019 - -2.0 MINOR ENSMUSG00000037892 Pcdh18 ENSMUST00000191794 ENSMUSP00000141995 TRANSLATION protein_coding - - 5 917.0 55.0 1.4 2.1 315.5 2.0 3,-1 0.3352 5 18.339 MINOR ENSMUSG00000049908 Gja8 ENSMUST00000062944 ENSMUSP00000049532 TRANSLATION protein_coding - CCDS17651.1 1 440.0 0.0 0.4 7.4 444.6 0.0 -3,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000000001 Gnai3 ENSMUST00000000001 ENSMUSP00000000001 TRANSLATION protein_coding - CCDS17751.1 1 354.0 24.0 7.5 36.9 408.9 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000028176 Lrrc7 ENSMUST00000200137 ENSMUSP00000142498 TRANSLATION protein_coding - CCDS80073.1 1 1495.0 0.0 12.51 2.1 184.8 0.0 -4,-7 0.9825 38 8.423 ALTERNATIVE:2 ENSMUSG00000028176 Lrrc7 ENSMUST00000199890 ENSMUSP00000142440 TRANSLATION protein_coding - CCDS80072.1 1 1398.0 0.0 10.68 0.0 125.0 0.0 -4,-7 0.1064 36 4.14 MINOR ENSMUSG00000028176 Lrrc7 ENSMUST00000238317 ENSMUSP00000158628 TRANSLATION protein_coding - - - 1488.0 0.0 12.51 3.6 184.8 0.0 -4,-2 1.0 38 9.0 ALTERNATIVE:2 ENSMUSG00000028176 Lrrc7 ENSMUST00000106044 ENSMUSP00000101659 TRANSLATION protein_coding - - 5 1542.0 0.0 12.51 3.1 184.8 0.0 -4,-7 0.769 39 8.808 PRINCIPAL:3 ENSMUSG00000028176 Lrrc7 ENSMUST00000198284 - NO_TRANSLATION retained_intron ENSMUSG00000028176 Lrrc7 ENSMUST00000200196 ENSMUSP00000143365 TRANSLATION protein_coding start - 5 1531.0 0.0 12.51 0.0 184.8 0.0 -4,-5 0.2943 39 -2.0 MINOR ENSMUSG00000028176 Lrrc7 ENSMUST00000197866 - NO_TRANSLATION retained_intron ENSMUSG00000038861 Pi4kb ENSMUST00000133166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038861 Pi4kb ENSMUST00000072287 ENSMUSP00000072134 TRANSLATION protein_coding - CCDS17599.1 1 801.0 14.0 8.95 11.3 84.5 0.0 -4,-5 1.0 15 14.34 PRINCIPAL:4 ENSMUSG00000038861 Pi4kb ENSMUST00000107251 ENSMUSP00000102872 TRANSLATION protein_coding - CCDS79978.1 1 816.0 14.0 8.95 11.3 84.5 0.0 -4,-5 0.9912 15 14.34 ALTERNATIVE:1 ENSMUSG00000038861 Pi4kb ENSMUST00000138209 ENSMUSP00000119833 TRANSLATION protein_coding stop - 5 174.0 3.0 1.6 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000038861 Pi4kb ENSMUST00000133297 ENSMUSP00000123529 TRANSLATION protein_coding start - 5 227.0 4.0 3.25 0.0 86.8 0.0 -4,-5 0.0046 2 -2.0 MINOR ENSMUSG00000038861 Pi4kb ENSMUST00000167008 ENSMUSP00000132150 TRANSLATION protein_coding - CCDS79979.1 1 484.0 14.0 8.55 2.7 84.5 0.0 -4,-7 0.2047 10 11.037 MINOR ENSMUSG00000038861 Pi4kb ENSMUST00000125476 ENSMUSP00000121965 TRANSLATION protein_coding - - 5 828.0 14.0 9.28 2.8 84.5 0.0 -4,-5 0.2589 15 12.525 MINOR ENSMUSG00000058897 Col25a1 ENSMUST00000080335 ENSMUSP00000079210 TRANSLATION protein_coding - CCDS38637.1 5 666.0 0.0 14.859 3.0 211.8 0.0 -4,-7 1.0 4 12.94 PRINCIPAL:1 ENSMUSG00000058897 Col25a1 ENSMUST00000197950 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058897 Col25a1 ENSMUST00000238846 ENSMUSP00000158974 TRANSLATION protein_coding - - - 698.0 0.0 14.819 0.0 201.0 0.0 -4,-7 0.0729 3 11.214 MINOR ENSMUSG00000058897 Col25a1 ENSMUST00000143830 - NO_TRANSLATION retained_intron ENSMUSG00000058897 Col25a1 ENSMUST00000106353 ENSMUSP00000101960 TRANSLATION protein_coding - CCDS38636.1 5 640.0 0.0 13.865 0.7 212.8 0.0 -4,-7 0.2314 4 10.014 MINOR ENSMUSG00000058897 Col25a1 ENSMUST00000198205 - NO_TRANSLATION retained_intron ENSMUSG00000058897 Col25a1 ENSMUST00000183368 ENSMUSP00000138875 TRANSLATION nonsense_mediated_decay - - 5 593.0 0.0 10.415 0.0 174.0 0.0 -4,-7 0.0006 4 -2.0 MINOR ENSMUSG00000052415 Tchh ENSMUST00000064257 ENSMUSP00000069525 TRANSLATION protein_coding - CCDS50980.1 5 1599.0 5.0 0.6 0.0 46.4 0.0 -4,-5 1.0 40 17.0 PRINCIPAL:1 ENSMUSG00000068923 Syt11 ENSMUST00000130869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068923 Syt11 ENSMUST00000107503 ENSMUSP00000103127 TRANSLATION protein_coding - - 2 124.0 12.0 1.6 0.0 72.3 0.0 -4,-7 0.0 2 4.152 MINOR ENSMUSG00000068923 Syt11 ENSMUST00000183267 ENSMUSP00000138284 TRANSLATION protein_coding start - 2 363.0 23.0 3.1 0.0 153.1 0.0 -4,-5 0.0435 6 -2.0 MINOR ENSMUSG00000068923 Syt11 ENSMUST00000107505 ENSMUSP00000103129 TRANSLATION protein_coding - CCDS38484.1 1 430.0 23.0 2.95 21.7 144.0 1.0 -4,-7 1.0 7 21.154 PRINCIPAL:1 ENSMUSG00000068923 Syt11 ENSMUST00000090945 ENSMUSP00000088464 TRANSLATION protein_coding - CCDS38484.1 1 430.0 23.0 2.95 21.7 144.0 1.0 -4,-7 1.0 7 21.154 PRINCIPAL:1 ENSMUSG00000004035 Gstm7 ENSMUST00000004137 ENSMUSP00000004137 TRANSLATION protein_coding - CCDS38595.1 1 218.0 11.0 6.58 31.9 128.0 0.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000004035 Gstm7 ENSMUST00000106688 ENSMUSP00000102299 TRANSLATION protein_coding - - 2 214.0 11.0 6.146 0.0 116.9 0.0 -4,-6 0.0195 8 16.464 MINOR ENSMUSG00000004035 Gstm7 ENSMUST00000124215 ENSMUSP00000118707 TRANSLATION protein_coding stop - 3 119.0 9.0 3.58 0.0 65.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000004035 Gstm7 ENSMUST00000133947 ENSMUSP00000122567 TRANSLATION protein_coding stop - 2 193.0 11.0 4.33 0.0 65.7 0.0 0,-4 0.003 6 -2.0 MINOR ENSMUSG00000004035 Gstm7 ENSMUST00000106687 ENSMUSP00000102298 TRANSLATION protein_coding - - 3 181.0 11.0 5.58 2.1 76.8 0.0 -4,-7 0.0237 6 13.074 MINOR ENSMUSG00000103243 Lce1d ENSMUST00000029524 ENSMUSP00000029524 TRANSLATION protein_coding - CCDS17566.1 1 133.0 0.0 0.0 0.0 28.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000039701 Usp53 ENSMUST00000197358 - NO_TRANSLATION retained_intron ENSMUSG00000039701 Usp53 ENSMUST00000199401 ENSMUSP00000143460 TRANSLATION protein_coding stop - 3 90.0 2.0 2.58 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039701 Usp53 ENSMUST00000197801 - NO_TRANSLATION retained_intron ENSMUSG00000039701 Usp53 ENSMUST00000197934 ENSMUSP00000143412 TRANSLATION protein_coding stop - 1 427.0 6.0 7.93 0.0 71.4 0.0 -4,-7 0.0311 2 -2.0 MINOR ENSMUSG00000039701 Usp53 ENSMUST00000199923 - NO_TRANSLATION retained_intron ENSMUSG00000039701 Usp53 ENSMUST00000090379 ENSMUSP00000087857 TRANSLATION protein_coding - CCDS17815.1 1 1069.0 4.0 8.68 0.0 68.2 0.0 -4,-7 0.9301 11 15.732 PRINCIPAL:1 ENSMUSG00000039701 Usp53 ENSMUST00000200188 - NO_TRANSLATION retained_intron ENSMUSG00000039701 Usp53 ENSMUST00000197314 ENSMUSP00000142600 TRANSLATION protein_coding - - 5 283.0 4.0 6.68 0.0 46.3 0.0 -4,-7 0.0028 3 9.888 MINOR ENSMUSG00000039701 Usp53 ENSMUST00000199329 ENSMUSP00000143119 TRANSLATION nonsense_mediated_decay - - 1 128.0 0.0 2.93 0.0 31.2 0.0 -4,-7 0.0005 1 -2.0 MINOR ENSMUSG00000039701 Usp53 ENSMUST00000198814 - NO_TRANSLATION retained_intron ENSMUSG00000027776 Il12a ENSMUST00000107816 ENSMUSP00000103446 TRANSLATION protein_coding - CCDS17400.1 1 215.0 0.0 2.875 3.3 343.1 0.0 4,-2 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000027776 Il12a ENSMUST00000192812 - NO_TRANSLATION retained_intron ENSMUSG00000027776 Il12a ENSMUST00000195408 - NO_TRANSLATION retained_intron ENSMUSG00000027776 Il12a ENSMUST00000029345 ENSMUSP00000029345 TRANSLATION protein_coding - - 5 236.0 0.0 2.875 0.0 343.1 0.0 1,2 0.0786 - 8.0 ALTERNATIVE:2 ENSMUSG00000027776 Il12a ENSMUST00000191910 - NO_TRANSLATION retained_intron ENSMUSG00000027776 Il12a ENSMUST00000195517 - NO_TRANSLATION retained_intron ENSMUSG00000118531 Gm53046 ENSMUST00000196748 ENSMUSP00000143674 TRANSLATION nonsense_mediated_decay,RT - - 5 157.0 0.0 1.4 0.0 69.2 0.0 -4,-7 0.7704 - -2.0 PRINCIPAL:1 ENSMUSG00000039058 Ak5 ENSMUST00000200062 ENSMUSP00000143636 TRANSLATION protein_coding start - 3 201.0 9.0 3.5 0.0 154.7 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000039058 Ak5 ENSMUST00000198552 - NO_TRANSLATION retained_intron ENSMUSG00000039058 Ak5 ENSMUST00000045262 ENSMUSP00000042785 TRANSLATION protein_coding - CCDS38675.1 1 562.0 9.0 6.23 15.9 271.5 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000041984 Rptn ENSMUST00000045912 ENSMUSP00000044998 TRANSLATION protein_coding - CCDS17581.1 5 1118.0 4.0 1.0 0.0 41.9 0.0 -4,-5 1.0 30 16.0 PRINCIPAL:1 ENSMUSG00000068877 Selenbp2 ENSMUST00000090848 ENSMUSP00000088358 TRANSLATION protein_coding - CCDS38539.1 1 472.0 0.0 10.91 30.8 739.4 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000068877 Selenbp2 ENSMUST00000173981 ENSMUSP00000133320 TRANSLATION protein_coding stop - 5 128.0 0.0 3.33 0.0 195.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068877 Selenbp2 ENSMUST00000174377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068877 Selenbp2 ENSMUST00000173849 ENSMUSP00000134270 TRANSLATION protein_coding - - 5 410.0 0.0 9.58 1.0 544.7 0.0 -4,-5 0.0301 7 3.342 MINOR ENSMUSG00000068877 Selenbp2 ENSMUST00000131650 ENSMUSP00000133462 TRANSLATION nonsense_mediated_decay - - 5 73.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000068877 Selenbp2 ENSMUST00000174223 ENSMUSP00000134623 TRANSLATION protein_coding stop - 5 134.0 0.0 3.33 0.0 178.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000068877 Selenbp2 ENSMUST00000132162 - NO_TRANSLATION retained_intron ENSMUSG00000004895 Prcc ENSMUST00000005015 ENSMUSP00000005015 TRANSLATION protein_coding - CCDS17456.1 1 491.0 0.0 1.5 7.5 213.9 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000027936 Crtc2 ENSMUST00000029545 ENSMUSP00000029545 TRANSLATION protein_coding - CCDS38501.1 1 692.0 0.0 1.6 9.8 390.4 0.0 -4,-7 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000027936 Crtc2 ENSMUST00000149897 - NO_TRANSLATION retained_intron ENSMUSG00000027936 Crtc2 ENSMUST00000130002 - NO_TRANSLATION retained_intron ENSMUSG00000027936 Crtc2 ENSMUST00000136970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027936 Crtc2 ENSMUST00000149422 - NO_TRANSLATION retained_intron ENSMUSG00000027936 Crtc2 ENSMUST00000123964 - NO_TRANSLATION retained_intron ENSMUSG00000027936 Crtc2 ENSMUST00000135002 - NO_TRANSLATION retained_intron ENSMUSG00000027936 Crtc2 ENSMUST00000184882 ENSMUSP00000139194 TRANSLATION nonsense_mediated_decay start - 5 475.0 0.0 0.0 0.0 229.1 0.0 -4,-1 0.0008 9 -2.0 MINOR ENSMUSG00000028062 Lamtor2 ENSMUST00000145548 - NO_TRANSLATION retained_intron ENSMUSG00000028062 Lamtor2 ENSMUST00000145172 - NO_TRANSLATION retained_intron ENSMUSG00000028062 Lamtor2 ENSMUST00000029698 ENSMUSP00000029698 TRANSLATION protein_coding - CCDS17478.1 1 125.0 0.0 3.25 32.9 65.1 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000028062 Lamtor2 ENSMUST00000156421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028062 Lamtor2 ENSMUST00000119002 ENSMUSP00000112936 TRANSLATION protein_coding - - 2 52.0 0.0 1.5 0.0 0.0 0.0 -4,-7 0.0 2 2.502 MINOR ENSMUSG00000036503 Rnf13 ENSMUST00000198510 ENSMUSP00000142451 TRANSLATION protein_coding stop - 2 96.0 0.0 0.7 0.0 0.0 0.0 2,-3 0.0025 1 -2.0 MINOR ENSMUSG00000036503 Rnf13 ENSMUST00000199041 ENSMUSP00000142335 TRANSLATION protein_coding - CCDS79910.1 1 268.0 4.0 3.536 0.0 70.0 2.0 2,-3 0.0387 4 12.378 MINOR ENSMUSG00000036503 Rnf13 ENSMUST00000197783 - NO_TRANSLATION retained_intron ENSMUSG00000036503 Rnf13 ENSMUST00000197920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036503 Rnf13 ENSMUST00000041826 ENSMUSP00000049331 TRANSLATION protein_coding - CCDS50913.1 1 381.0 8.0 4.286 19.1 86.1 2.0 2,-3 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000036503 Rnf13 ENSMUST00000198996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036503 Rnf13 ENSMUST00000198249 ENSMUSP00000142828 TRANSLATION protein_coding stop - 3 131.0 0.0 1.154 0.0 40.0 0.0 2,-3 0.0008 2 -2.0 MINOR ENSMUSG00000036503 Rnf13 ENSMUST00000200600 ENSMUSP00000142594 TRANSLATION protein_coding stop - 3 64.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0019 - -2.0 MINOR ENSMUSG00000036503 Rnf13 ENSMUST00000197205 ENSMUSP00000143692 TRANSLATION nonsense_mediated_decay - - 1 166.0 0.0 1.214 0.0 30.2 0.0 2,-3 0.0008 2 -2.0 MINOR ENSMUSG00000036503 Rnf13 ENSMUST00000198214 ENSMUSP00000143498 TRANSLATION protein_coding - CCDS84622.1 1 244.0 0.0 2.786 0.0 37.7 2.0 2,-3 0.0324 4 5.628 MINOR ENSMUSG00000036503 Rnf13 ENSMUST00000200497 ENSMUSP00000142462 TRANSLATION protein_coding - CCDS84623.1 1 352.0 3.0 3.536 0.0 69.0 2.0 2,-3 0.0388 4 11.556 MINOR ENSMUSG00000037737 Actrt3 ENSMUST00000047630 ENSMUSP00000048360 TRANSLATION protein_coding - CCDS17283.1 1 369.0 38.0 1.6 10.9 365.8 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000078173 Lenep ENSMUST00000057431 ENSMUSP00000052968 TRANSLATION protein_coding - CCDS38491.1 - 61.0 0.0 0.6 7.8 119.9 0.0 -4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027901 Dennd2d ENSMUST00000193651 - NO_TRANSLATION retained_intron ENSMUSG00000027901 Dennd2d ENSMUST00000149225 ENSMUSP00000141589 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000027901 Dennd2d ENSMUST00000139062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027901 Dennd2d ENSMUST00000195305 - NO_TRANSLATION retained_intron ENSMUSG00000027901 Dennd2d ENSMUST00000183271 ENSMUSP00000138462 TRANSLATION protein_coding - CCDS17722.2 1 476.0 0.0 9.5 2.7 291.4 0.0 -4,0 0.8078 6 12.772 MINOR ENSMUSG00000027901 Dennd2d ENSMUST00000029508 ENSMUSP00000029508 TRANSLATION protein_coding - CCDS51040.1 1 466.0 0.0 9.5 5.4 291.4 0.0 -4,0 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000039335 Spata16 ENSMUST00000108305 ENSMUSP00000103941 TRANSLATION protein_coding - CCDS38403.1 1 534.0 0.0 0.0 0.0 1062.4 0.0 -4,-6 0.0862 - 1.83 MINOR ENSMUSG00000039335 Spata16 ENSMUST00000047005 ENSMUSP00000043378 TRANSLATION protein_coding - CCDS17269.1 1 571.0 0.0 0.0 7.8 1131.9 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000027808 Serp1 ENSMUST00000029385 ENSMUSP00000029385 TRANSLATION protein_coding - CCDS38436.1 1 66.0 0.0 1.25 33.0 95.9 0.0 -4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000103766 Gm38392 ENSMUST00000165196 ENSMUSP00000132187 TRANSLATION protein_coding,RT start - 5 434.0 5.0 8.2 0.0 279.0 0.0 -4,-7 0.157 - -2.0 PRINCIPAL:5 ENSMUSG00000103766 Gm38392 ENSMUST00000163277 ENSMUSP00000141315 TRANSLATION nonsense_mediated_decay,RT start - 1 48.0 0.0 0.0 0.0 49.2 0.0 -4,-5 0.3695 - -2.0 ALTERNATIVE:2 ENSMUSG00000028140 Mrpl9 ENSMUST00000199009 - NO_TRANSLATION retained_intron ENSMUSG00000028140 Mrpl9 ENSMUST00000196143 ENSMUSP00000142859 TRANSLATION protein_coding - - 1 268.0 0.0 4.25 0.0 0.0 0.0 -4,-1 0.0951 3 4.002 MINOR ENSMUSG00000028140 Mrpl9 ENSMUST00000029786 ENSMUSP00000029786 TRANSLATION protein_coding - CCDS17593.1 1 265.0 0.0 5.25 5.2 0.0 0.0 -4,-1 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000038526 Car14 ENSMUST00000149202 - NO_TRANSLATION retained_intron ENSMUSG00000038526 Car14 ENSMUST00000036181 ENSMUSP00000036983 TRANSLATION protein_coding - CCDS17625.1 1 337.0 3.0 6.08 10.3 308.3 0.0 2,-3 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000038526 Car14 ENSMUST00000126722 - NO_TRANSLATION retained_intron ENSMUSG00000038526 Car14 ENSMUST00000147962 ENSMUSP00000117464 TRANSLATION protein_coding stop - 3 171.0 3.0 3.81534 0.0 184.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038997 Asb17 ENSMUST00000044089 ENSMUSP00000041293 TRANSLATION protein_coding - CCDS17922.1 1 295.0 0.0 0.5 10.3 31.4 0.0 -4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038997 Asb17 ENSMUST00000198849 ENSMUSP00000142678 TRANSLATION nonsense_mediated_decay - - 1 134.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0003 - -2.0 MINOR ENSMUSG00000027809 Etfdh ENSMUST00000029386 ENSMUSP00000029386 TRANSLATION protein_coding - CCDS17418.1 1 616.0 50.0 11.1 21.1 190.9 0.0 -4,-7 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000027809 Etfdh ENSMUST00000153039 - NO_TRANSLATION retained_intron ENSMUSG00000027809 Etfdh ENSMUST00000149511 - NO_TRANSLATION retained_intron ENSMUSG00000027809 Etfdh ENSMUST00000126809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027809 Etfdh ENSMUST00000135058 - NO_TRANSLATION retained_intron ENSMUSG00000027809 Etfdh ENSMUST00000194620 - NO_TRANSLATION retained_intron ENSMUSG00000027809 Etfdh ENSMUST00000120992 ENSMUSP00000113888 TRANSLATION protein_coding - - 1 556.0 50.0 10.5 8.0 190.9 0.0 -4,-5 0.2989 23 18.192 MINOR ENSMUSG00000003382 Etv3 ENSMUST00000170036 ENSMUSP00000127419 TRANSLATION protein_coding - CCDS17453.1 1 513.0 0.0 2.0 6.0 117.7 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000003382 Etv3 ENSMUST00000136680 - NO_TRANSLATION retained_intron ENSMUSG00000003382 Etv3 ENSMUST00000117293 ENSMUSP00000114047 TRANSLATION protein_coding - - 2 146.0 0.0 2.0 0.0 117.7 0.0 -4,-5 0.016 2 12.0 MINOR ENSMUSG00000003382 Etv3 ENSMUST00000152010 - NO_TRANSLATION retained_intron ENSMUSG00000003382 Etv3 ENSMUST00000119109 ENSMUSP00000112915 TRANSLATION protein_coding - CCDS17453.1 1 513.0 0.0 2.0 6.0 117.7 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000042312 S100a13 ENSMUST00000048138 ENSMUSP00000047737 TRANSLATION protein_coding - - 1 98.0 11.0 2.0 9.4 49.0 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000028040 Efna4 ENSMUST00000029674 ENSMUSP00000029674 TRANSLATION protein_coding - CCDS38489.1 1 206.0 0.0 2.35 0.0 130.5 0.0 1,1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040389 Wdr47 ENSMUST00000139626 - NO_TRANSLATION retained_intron ENSMUSG00000040389 Wdr47 ENSMUST00000124731 ENSMUSP00000143335 TRANSLATION nonsense_mediated_decay - - 3 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040389 Wdr47 ENSMUST00000123568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040389 Wdr47 ENSMUST00000197398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040389 Wdr47 ENSMUST00000051145 ENSMUSP00000057482 TRANSLATION protein_coding - CCDS17765.1 1 920.0 0.0 2.6 15.8 69.4 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000040389 Wdr47 ENSMUST00000133453 - NO_TRANSLATION retained_intron ENSMUSG00000040389 Wdr47 ENSMUST00000144325 - NO_TRANSLATION retained_intron ENSMUSG00000036853 Mcoln3 ENSMUST00000039450 ENSMUSP00000038801 TRANSLATION protein_coding - CCDS17900.1 1 553.0 0.0 11.15 13.8 47.3 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036853 Mcoln3 ENSMUST00000146689 - NO_TRANSLATION retained_intron ENSMUSG00000036853 Mcoln3 ENSMUST00000140214 ENSMUSP00000115655 TRANSLATION protein_coding stop - 2 96.0 0.0 1.75 0.0 0.0 2.0 -4,-6 0.0005 - -2.0 MINOR ENSMUSG00000028109 Hormad1 ENSMUST00000029754 ENSMUSP00000029754 TRANSLATION protein_coding - CCDS71292.1 1 392.0 0.0 1.823 10.2 211.5 0.0 -4,0 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028109 Hormad1 ENSMUST00000171191 ENSMUSP00000127180 TRANSLATION protein_coding - CCDS38547.1 1 374.0 0.0 1.823 0.0 211.5 0.0 -4,0 0.2385 - 12.0 MINOR ENSMUSG00000028109 Hormad1 ENSMUST00000090797 ENSMUSP00000088303 TRANSLATION protein_coding - CCDS38547.1 1 374.0 0.0 1.823 0.0 211.5 0.0 -4,0 0.2385 - 12.0 MINOR ENSMUSG00000028109 Hormad1 ENSMUST00000107154 ENSMUSP00000102772 TRANSLATION protein_coding - CCDS38547.1 1 374.0 0.0 1.823 0.0 211.5 0.0 -4,0 0.2385 - 12.0 MINOR ENSMUSG00000103034 Gm8797 ENSMUST00000192045 ENSMUSP00000141419 TRANSLATION protein_coding - - - 77.0 0.0 1.0 0.1 120.5 0.0 -4,-5 0.7896 - 12.0 PRINCIPAL:1 ENSMUSG00000046213 Cym ENSMUST00000029504 ENSMUSP00000029504 TRANSLATION protein_coding - CCDS51041.1 1 379.0 5.0 7.64 11.6 408.6 0.0 4,-3 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000028182 Lrriq3 ENSMUST00000195418 - NO_TRANSLATION retained_intron ENSMUSG00000028182 Lrriq3 ENSMUST00000192383 ENSMUSP00000141372 TRANSLATION protein_coding - - 1 345.0 0.0 1.6 0.0 29.6 0.0 -4,-5 0.0678 - 8.0 ALTERNATIVE:2 ENSMUSG00000028182 Lrriq3 ENSMUST00000194376 ENSMUSP00000142127 TRANSLATION protein_coding - - 1 300.0 0.0 1.6 2.1 29.6 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000028182 Lrriq3 ENSMUST00000029833 ENSMUSP00000029833 TRANSLATION protein_coding - CCDS38682.1 1 633.0 0.0 1.6 0.1 29.6 0.0 -4,-5 0.4992 - 8.0 ALTERNATIVE:2 ENSMUSG00000027878 Notch2 ENSMUST00000079812 ENSMUSP00000078741 TRANSLATION protein_coding - CCDS51013.1 1 2473.0 18.0 16.748 6.9 1384.8 0.0 4,-1 1.0 26 20.0 PRINCIPAL:1 ENSMUSG00000027878 Notch2 ENSMUST00000198324 - NO_TRANSLATION retained_intron ENSMUSG00000056947 Mab21l1 ENSMUST00000075422 ENSMUSP00000074878 TRANSLATION protein_coding - CCDS17360.1 - 359.0 0.0 1.0 36.9 331.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000074268 Amy2a5 ENSMUST00000098673 ENSMUSP00000096270 TRANSLATION protein_coding - CCDS17775.1 1 508.0 44.0 10.0 29.4 118.1 0.0 4,-1 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000074268 Amy2a5 ENSMUST00000144352 - NO_TRANSLATION retained_intron ENSMUSG00000015748 Prpf3 ENSMUST00000161073 - NO_TRANSLATION retained_intron ENSMUSG00000015748 Prpf3 ENSMUST00000015892 ENSMUSP00000015892 TRANSLATION protein_coding - CCDS17621.1 1 683.0 0.0 8.58 19.1 483.6 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000015748 Prpf3 ENSMUST00000160109 ENSMUSP00000124302 TRANSLATION nonsense_mediated_decay - - 3 101.0 0.0 2.0 0.0 54.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000015748 Prpf3 ENSMUST00000160155 - NO_TRANSLATION retained_intron ENSMUSG00000015748 Prpf3 ENSMUST00000161482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015748 Prpf3 ENSMUST00000163059 - NO_TRANSLATION retained_intron ENSMUSG00000015748 Prpf3 ENSMUST00000159901 ENSMUSP00000124444 TRANSLATION protein_coding start - 3 114.0 0.0 1.75 0.0 62.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000015748 Prpf3 ENSMUST00000161420 - NO_TRANSLATION retained_intron ENSMUSG00000015748 Prpf3 ENSMUST00000161476 ENSMUSP00000124950 TRANSLATION protein_coding - CCDS17621.1 1 683.0 0.0 8.58 19.1 483.6 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000074579 Lekr1 ENSMUST00000195559 - NO_TRANSLATION retained_intron ENSMUSG00000074579 Lekr1 ENSMUST00000161794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074579 Lekr1 ENSMUST00000099075 ENSMUSP00000096674 TRANSLATION protein_coding - CCDS17389.1 1 116.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.1117 - 2.0 MINOR ENSMUSG00000074579 Lekr1 ENSMUST00000107848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074579 Lekr1 ENSMUST00000177434 ENSMUSP00000158835 TRANSLATION protein_coding - - 5 690.0 2.0 1.298 6.6 0.0 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000074579 Lekr1 ENSMUST00000161534 - NO_TRANSLATION retained_intron ENSMUSG00000074579 Lekr1 ENSMUST00000161851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068999 Vmn2r5 ENSMUST00000177184 ENSMUSP00000135592 TRANSLATION protein_coding - - 5 911.0 0.0 3.26 0.0 518.8 0.0 4,-1 0.919 - 12.0 PRINCIPAL:1 ENSMUSG00000028102 Pex11b ENSMUST00000156015 ENSMUSP00000115956 TRANSLATION nonsense_mediated_decay - - 1 50.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000028102 Pex11b ENSMUST00000147821 - NO_TRANSLATION retained_intron ENSMUSG00000028102 Pex11b ENSMUST00000139523 - NO_TRANSLATION retained_intron ENSMUSG00000028102 Pex11b ENSMUST00000118557 ENSMUSP00000113365 TRANSLATION protein_coding - CCDS17643.1 1 259.0 0.0 0.0 11.7 248.1 1.0 -4,0 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000028102 Pex11b ENSMUST00000165842 ENSMUSP00000126631 TRANSLATION protein_coding - CCDS51006.1 2 245.0 0.0 0.0 5.6 220.6 1.0 -4,-1 0.4975 5 5.64 MINOR ENSMUSG00000028102 Pex11b ENSMUST00000048766 ENSMUSP00000037962 TRANSLATION protein_coding - CCDS17643.1 1 259.0 0.0 0.0 11.7 248.1 1.0 -4,0 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000028102 Pex11b ENSMUST00000144962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044528 Tram1l1 ENSMUST00000058994 ENSMUSP00000062635 TRANSLATION protein_coding - CCDS17819.1 - 363.0 0.0 0.6 9.2 136.3 0.0 -4,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000028179 Cth ENSMUST00000198009 - NO_TRANSLATION retained_intron ENSMUSG00000028179 Cth ENSMUST00000118539 ENSMUSP00000113672 TRANSLATION protein_coding - CCDS51101.1 1 398.0 13.0 9.75 7.3 514.3 0.0 -4,-6 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000028179 Cth ENSMUST00000125028 - NO_TRANSLATION retained_intron ENSMUSG00000028179 Cth ENSMUST00000129805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004892 Bcan ENSMUST00000192274 - NO_TRANSLATION retained_intron ENSMUSG00000004892 Bcan ENSMUST00000191627 - NO_TRANSLATION retained_intron ENSMUSG00000004892 Bcan ENSMUST00000193276 - NO_TRANSLATION retained_intron ENSMUSG00000004892 Bcan ENSMUST00000194596 - NO_TRANSLATION retained_intron ENSMUSG00000004892 Bcan ENSMUST00000090971 ENSMUSP00000088491 TRANSLATION protein_coding - CCDS17462.1 1 883.0 13.0 6.29 0.4 349.9 0.0 4,-1 1.0 24 18.0 PRINCIPAL:1 ENSMUSG00000004892 Bcan ENSMUST00000194193 ENSMUSP00000141455 TRANSLATION protein_coding stop - 3 105.0 0.0 0.4 0.0 0.0 0.0 4,-1 0.0011 3 -2.0 MINOR ENSMUSG00000037016 Frem2 ENSMUST00000091137 ENSMUSP00000088670 TRANSLATION protein_coding - CCDS17348.1 1 3160.0 7.0 4.36 0.1 1089.6 0.0 0,-4 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000037016 Frem2 ENSMUST00000197519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037016 Frem2 ENSMUST00000199543 - NO_TRANSLATION retained_intron ENSMUSG00000037016 Frem2 ENSMUST00000199323 - NO_TRANSLATION retained_intron ENSMUSG00000052544 St6galnac3 ENSMUST00000199707 ENSMUSP00000143030 TRANSLATION protein_coding start - 3 125.0 5.0 2.15 0.0 42.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000052544 St6galnac3 ENSMUST00000200397 ENSMUSP00000143747 TRANSLATION protein_coding - CCDS38677.1 1 305.0 10.0 3.598 22.6 112.8 0.0 -1,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000052544 St6galnac3 ENSMUST00000200576 - NO_TRANSLATION retained_intron ENSMUSG00000052544 St6galnac3 ENSMUST00000198775 - NO_TRANSLATION retained_intron ENSMUSG00000052544 St6galnac3 ENSMUST00000064460 ENSMUSP00000068598 TRANSLATION protein_coding start/stop - 3 196.0 8.0 2.398 0.0 94.7 0.0 -4,-7 0.0004 - -2.0 MINOR ENSMUSG00000027998 Plrg1 ENSMUST00000151915 - NO_TRANSLATION retained_intron ENSMUSG00000027998 Plrg1 ENSMUST00000150268 ENSMUSP00000114968 TRANSLATION protein_coding - CCDS17433.1 1 513.0 0.0 8.83 22.8 137.2 0.0 -4,-7 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000027998 Plrg1 ENSMUST00000029628 ENSMUSP00000029628 TRANSLATION nonsense_mediated_decay - - 1 383.0 0.0 6.0 0.0 116.5 0.0 -4,-7 0.0044 8 -2.0 MINOR ENSMUSG00000027998 Plrg1 ENSMUST00000135813 - NO_TRANSLATION retained_intron ENSMUSG00000027998 Plrg1 ENSMUST00000122128 ENSMUSP00000113614 TRANSLATION protein_coding - - 5 504.0 0.0 8.83 2.0 137.2 0.0 -4,-7 0.3005 9 12.184 MINOR ENSMUSG00000039234 Sec24d ENSMUST00000198210 - NO_TRANSLATION retained_intron ENSMUSG00000039234 Sec24d ENSMUST00000196482 - NO_TRANSLATION retained_intron ENSMUSG00000039234 Sec24d ENSMUST00000047923 ENSMUSP00000035823 TRANSLATION protein_coding - CCDS38621.1 1 1032.0 4.0 17.0 7.3 525.1 0.0 -4,-5 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000039234 Sec24d ENSMUST00000197291 - NO_TRANSLATION retained_intron ENSMUSG00000039234 Sec24d ENSMUST00000200309 - NO_TRANSLATION retained_intron ENSMUSG00000039234 Sec24d ENSMUST00000200333 ENSMUSP00000143588 TRANSLATION protein_coding - - 1 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000039234 Sec24d ENSMUST00000196167 - NO_TRANSLATION retained_intron ENSMUSG00000039234 Sec24d ENSMUST00000196631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028098 Rnf115 ENSMUST00000199051 ENSMUSP00000143321 TRANSLATION nonsense_mediated_decay - - 1 77.0 4.0 1.35 0.0 31.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028098 Rnf115 ENSMUST00000199974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028098 Rnf115 ENSMUST00000029740 ENSMUSP00000029740 TRANSLATION protein_coding - CCDS17647.1 1 305.0 12.0 3.8875 2.0 81.7 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000028134 Ptbp2 ENSMUST00000195902 ENSMUSP00000143325 TRANSLATION protein_coding start/stop - 5 155.0 0.0 3.08 0.0 71.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028134 Ptbp2 ENSMUST00000197464 ENSMUSP00000143281 TRANSLATION protein_coding - - 1 241.0 0.0 3.6 0.0 24.2 0.0 -4,-5 0.0 7 0.0 MINOR ENSMUSG00000028134 Ptbp2 ENSMUST00000196203 - NO_TRANSLATION retained_intron ENSMUSG00000028134 Ptbp2 ENSMUST00000198403 ENSMUSP00000142664 TRANSLATION protein_coding - - 1 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028134 Ptbp2 ENSMUST00000198733 - NO_TRANSLATION retained_intron ENSMUSG00000028134 Ptbp2 ENSMUST00000198399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028134 Ptbp2 ENSMUST00000199026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028134 Ptbp2 ENSMUST00000029780 ENSMUSP00000029780 TRANSLATION protein_coding - CCDS38616.1 1 532.0 0.0 9.43 21.3 194.9 0.0 -4,-5 0.999 17 12.0 ALTERNATIVE:1 ENSMUSG00000028134 Ptbp2 ENSMUST00000200097 ENSMUSP00000143510 TRANSLATION protein_coding - CCDS80010.1 1 531.0 0.0 9.43 21.3 196.7 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:4 ENSMUSG00000028134 Ptbp2 ENSMUST00000196343 - NO_TRANSLATION retained_intron ENSMUSG00000028134 Ptbp2 ENSMUST00000197833 ENSMUSP00000143719 TRANSLATION nonsense_mediated_decay - - 5 356.0 0.0 5.35 0.0 33.2 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000028134 Ptbp2 ENSMUST00000196066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028134 Ptbp2 ENSMUST00000197387 ENSMUSP00000142711 TRANSLATION nonsense_mediated_decay start - 3 33.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000027615 Hps3 ENSMUST00000151752 - NO_TRANSLATION retained_intron ENSMUSG00000027615 Hps3 ENSMUST00000139446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027615 Hps3 ENSMUST00000133094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027615 Hps3 ENSMUST00000137408 - NO_TRANSLATION retained_intron ENSMUSG00000027615 Hps3 ENSMUST00000012580 ENSMUSP00000012580 TRANSLATION protein_coding - CCDS17260.1 1 1002.0 0.0 0.0 7.8 1355.3 0.0 -4,-6 1.0 12 8.0 PRINCIPAL:1 ENSMUSG00000027615 Hps3 ENSMUST00000124808 - NO_TRANSLATION retained_intron ENSMUSG00000027615 Hps3 ENSMUST00000130171 - NO_TRANSLATION retained_intron ENSMUSG00000027615 Hps3 ENSMUST00000126644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027615 Hps3 ENSMUST00000155121 - NO_TRANSLATION retained_intron ENSMUSG00000027615 Hps3 ENSMUST00000141308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027615 Hps3 ENSMUST00000108321 ENSMUSP00000103957 TRANSLATION protein_coding - CCDS50872.1 1 870.0 0.0 0.0 0.0 1183.9 0.0 -4,-6 0.1148 12 0.0 MINOR ENSMUSG00000028053 Ash1l ENSMUST00000186583 ENSMUSP00000140251 TRANSLATION protein_coding - CCDS17487.1 5 2958.0 28.0 10.925 5.1 207.3 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000028053 Ash1l ENSMUST00000198846 - NO_TRANSLATION retained_intron ENSMUSG00000028053 Ash1l ENSMUST00000090933 ENSMUSP00000088451 TRANSLATION protein_coding - CCDS17487.1 5 2958.0 28.0 10.925 5.1 207.3 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000028053 Ash1l ENSMUST00000189824 - NO_TRANSLATION retained_intron ENSMUSG00000043542 Zc2hc1a ENSMUST00000051064 ENSMUSP00000054734 TRANSLATION protein_coding - CCDS17230.1 1 324.0 8.0 2.039 10.6 56.8 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000043542 Zc2hc1a ENSMUST00000193010 ENSMUSP00000141497 TRANSLATION protein_coding - - 1 288.0 8.0 2.039 1.1 56.8 0.0 -4,-5 0.1807 11 18.03 MINOR ENSMUSG00000043542 Zc2hc1a ENSMUST00000192835 - NO_TRANSLATION retained_intron ENSMUSG00000003617 Cp ENSMUST00000108329 ENSMUSP00000103965 TRANSLATION protein_coding - - 5 1086.0 36.0 19.75 6.0 167.0 0.0 4,-1 0.7848 47 13.666 ALTERNATIVE:1 ENSMUSG00000003617 Cp ENSMUST00000003714 ENSMUSP00000003714 TRANSLATION protein_coding - CCDS71227.1 1 1085.0 36.0 19.75 4.2 168.1 0.0 4,-1 0.8639 47 13.066 ALTERNATIVE:2 ENSMUSG00000003617 Cp ENSMUST00000091309 ENSMUSP00000088857 TRANSLATION protein_coding - CCDS38401.1 1 1061.0 36.0 19.75 7.0 167.0 0.0 4,-1 1.0 47 14.0 PRINCIPAL:4 ENSMUSG00000003617 Cp ENSMUST00000150264 - NO_TRANSLATION retained_intron ENSMUSG00000003617 Cp ENSMUST00000108328 ENSMUSP00000103964 TRANSLATION protein_coding - CCDS71227.1 1 1085.0 36.0 19.75 4.2 168.1 0.0 4,-1 0.8639 47 13.066 ALTERNATIVE:2 ENSMUSG00000003617 Cp ENSMUST00000173779 ENSMUSP00000133643 TRANSLATION protein_coding start - 3 52.0 4.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000003617 Cp ENSMUST00000131454 - NO_TRANSLATION retained_intron ENSMUSG00000003617 Cp ENSMUST00000108325 ENSMUSP00000103961 TRANSLATION protein_coding - - 5 1060.0 36.0 19.75 6.3 168.1 0.0 4,-1 0.8731 47 13.766 ALTERNATIVE:1 ENSMUSG00000003617 Cp ENSMUST00000173848 ENSMUSP00000133676 TRANSLATION protein_coding start - 5 120.0 2.0 3.05445 0.0 32.1 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000003617 Cp ENSMUST00000128615 - NO_TRANSLATION retained_intron ENSMUSG00000003617 Cp ENSMUST00000172860 ENSMUSP00000133374 TRANSLATION protein_coding start - 5 197.0 13.0 4.25 0.0 59.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000003617 Cp ENSMUST00000129135 - NO_TRANSLATION retained_intron ENSMUSG00000003617 Cp ENSMUST00000131811 - NO_TRANSLATION retained_intron ENSMUSG00000003617 Cp ENSMUST00000174803 - NO_TRANSLATION retained_intron ENSMUSG00000003617 Cp ENSMUST00000172605 ENSMUSP00000134347 TRANSLATION nonsense_mediated_decay start - 5 58.0 1.0 1.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000003617 Cp ENSMUST00000125994 - NO_TRANSLATION retained_intron ENSMUSG00000027698 Nceh1 ENSMUST00000138947 ENSMUSP00000115209 TRANSLATION nonsense_mediated_decay - - 3 51.0 0.0 1.0 0.0 0.0 0.0 0,-3 0.0 1 -2.0 MINOR ENSMUSG00000027698 Nceh1 ENSMUST00000046515 ENSMUSP00000045864 TRANSLATION protein_coding - CCDS17271.1 1 408.0 3.0 4.75 13.7 19.5 0.0 1,-2 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000027698 Nceh1 ENSMUST00000140872 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027698 Nceh1 ENSMUST00000091284 ENSMUSP00000088829 TRANSLATION protein_coding - - 1 199.0 0.0 2.75 0.0 0.0 0.0 1,-2 0.0034 4 1.998 MINOR ENSMUSG00000027698 Nceh1 ENSMUST00000129412 - NO_TRANSLATION retained_intron ENSMUSG00000027939 Nup210l ENSMUST00000200410 ENSMUSP00000143368 TRANSLATION protein_coding - - 5 1881.0 0.0 0.0 0.4 30.7 1.0 0,-3 0.7102 8 2.0 ALTERNATIVE:2 ENSMUSG00000027939 Nup210l ENSMUST00000029548 ENSMUSP00000029548 TRANSLATION protein_coding - CCDS50969.1 5 1881.0 0.0 0.0 0.4 30.7 1.0 0,-3 1.0 8 2.0 PRINCIPAL:2 ENSMUSG00000068876 Cgn ENSMUST00000155485 ENSMUSP00000142809 TRANSLATION protein_coding - - 2 448.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 12 0.0 MINOR ENSMUSG00000068876 Cgn ENSMUST00000238849 ENSMUSP00000159109 TRANSLATION protein_coding - CCDS50984.1 - 1192.0 0.0 2.25 1.9 118.8 0.0 -4,-5 1.0 39 7.0 PRINCIPAL:4 ENSMUSG00000068876 Cgn ENSMUST00000153263 ENSMUSP00000143156 TRANSLATION protein_coding - - 2 403.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 14 0.0 MINOR ENSMUSG00000068876 Cgn ENSMUST00000107272 ENSMUSP00000102893 TRANSLATION protein_coding - - 1 1183.0 0.0 2.25 0.0 118.8 0.0 -4,-5 0.3043 39 6.0 ALTERNATIVE:2 ENSMUSG00000068876 Cgn ENSMUST00000107273 ENSMUSP00000102894 TRANSLATION protein_coding - - 1 1191.0 0.0 2.25 1.9 118.8 0.0 -4,-5 0.8054 39 7.0 ALTERNATIVE:2 ENSMUSG00000038777 Sema6c ENSMUST00000168321 ENSMUSP00000129081 TRANSLATION protein_coding - CCDS71289.1 1 963.0 0.0 10.046 5.6 400.3 2.0 4,-1 1.0 2 10.0 PRINCIPAL:4 ENSMUSG00000038777 Sema6c ENSMUST00000130814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038777 Sema6c ENSMUST00000142306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038777 Sema6c ENSMUST00000130662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038777 Sema6c ENSMUST00000107217 ENSMUSP00000102835 TRANSLATION protein_coding - - 1 923.0 0.0 9.046 1.0 333.3 2.0 4,-1 0.0713 2 4.002 MINOR ENSMUSG00000038777 Sema6c ENSMUST00000134125 - NO_TRANSLATION retained_intron ENSMUSG00000038777 Sema6c ENSMUST00000090821 ENSMUSP00000088331 TRANSLATION protein_coding - CCDS17604.1 5 931.0 0.0 10.046 4.4 400.3 2.0 4,-1 0.8409 2 9.478 ALTERNATIVE:2 ENSMUSG00000038777 Sema6c ENSMUST00000131620 ENSMUSP00000138154 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 0.666 0.0 0.0 0.0 4,-1 0.0034 - -2.0 MINOR ENSMUSG00000038777 Sema6c ENSMUST00000090823 ENSMUSP00000088333 TRANSLATION protein_coding - CCDS71289.1 1 963.0 0.0 10.046 5.6 400.3 2.0 4,-1 1.0 2 10.0 PRINCIPAL:4 ENSMUSG00000038777 Sema6c ENSMUST00000204709 ENSMUSP00000144702 TRANSLATION nonsense_mediated_decay - - 1 124.0 0.0 1.416 0.0 0.0 0.0 4,-1 0.0023 - -2.0 MINOR ENSMUSG00000038777 Sema6c ENSMUST00000131742 ENSMUSP00000142525 TRANSLATION protein_coding stop - 2 29.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000038777 Sema6c ENSMUST00000141607 - NO_TRANSLATION retained_intron ENSMUSG00000038777 Sema6c ENSMUST00000126597 - NO_TRANSLATION retained_intron ENSMUSG00000038777 Sema6c ENSMUST00000202315 ENSMUSP00000144039 TRANSLATION protein_coding - CCDS17604.1 1 931.0 0.0 10.046 4.4 400.3 2.0 4,-1 0.8409 2 9.478 ALTERNATIVE:2 ENSMUSG00000038777 Sema6c ENSMUST00000142449 ENSMUSP00000123457 TRANSLATION nonsense_mediated_decay - - 1 124.0 0.0 1.416 0.0 0.0 0.0 4,-1 0.0023 - -2.0 MINOR ENSMUSG00000028167 Bdh2 ENSMUST00000029817 ENSMUSP00000029817 TRANSLATION protein_coding - CCDS17853.1 1 245.0 29.0 7.25 30.9 170.1 0.0 -2,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000028167 Bdh2 ENSMUST00000198491 - NO_TRANSLATION retained_intron ENSMUSG00000028167 Bdh2 ENSMUST00000120397 ENSMUSP00000112683 TRANSLATION protein_coding - CCDS51073.1 5 255.0 29.0 7.25 1.3 170.1 0.0 -4,-6 0.2576 8 18.04 MINOR ENSMUSG00000028167 Bdh2 ENSMUST00000154869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078578 Ube2d3 ENSMUST00000199582 ENSMUSP00000143013 TRANSLATION protein_coding stop - 3 29.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000078578 Ube2d3 ENSMUST00000166033 ENSMUSP00000130096 TRANSLATION protein_coding - CCDS38644.1 1 147.0 0.0 4.74 34.9 178.8 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000078578 Ube2d3 ENSMUST00000197357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078578 Ube2d3 ENSMUST00000196446 ENSMUSP00000142974 TRANSLATION protein_coding stop - 5 147.0 0.0 4.74 34.9 178.8 0.0 -4,-5 0.8407 1 -2.0 MINOR ENSMUSG00000078578 Ube2d3 ENSMUST00000196564 - NO_TRANSLATION retained_intron ENSMUSG00000078578 Ube2d3 ENSMUST00000199613 ENSMUSP00000143301 TRANSLATION protein_coding - CCDS38644.1 3 147.0 0.0 4.74 34.9 178.8 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000078578 Ube2d3 ENSMUST00000198685 ENSMUSP00000142612 TRANSLATION protein_coding stop - 3 132.0 0.0 4.24 0.0 171.8 0.0 -4,-5 0.0465 1 -2.0 MINOR ENSMUSG00000078578 Ube2d3 ENSMUST00000196248 - NO_TRANSLATION retained_intron ENSMUSG00000078578 Ube2d3 ENSMUST00000197134 ENSMUSP00000143606 TRANSLATION protein_coding - - 5 148.0 0.0 4.74 34.9 180.1 0.0 -4,-5 0.8429 1 12.0 ALTERNATIVE:1 ENSMUSG00000078578 Ube2d3 ENSMUST00000106291 ENSMUSP00000101898 TRANSLATION protein_coding - CCDS38644.1 1 147.0 0.0 4.74 34.9 178.8 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000078578 Ube2d3 ENSMUST00000198748 ENSMUSP00000142763 TRANSLATION nonsense_mediated_decay - - 1 50.0 0.0 1.542 0.0 23.4 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000078578 Ube2d3 ENSMUST00000196878 - NO_TRANSLATION retained_intron ENSMUSG00000078578 Ube2d3 ENSMUST00000196591 ENSMUSP00000143758 TRANSLATION protein_coding stop - 5 73.0 0.0 2.49 0.0 80.6 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000078578 Ube2d3 ENSMUST00000197539 ENSMUSP00000143065 TRANSLATION protein_coding - CCDS38644.1 1 147.0 0.0 4.74 34.9 178.8 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000078578 Ube2d3 ENSMUST00000197859 ENSMUSP00000143608 TRANSLATION protein_coding - CCDS38644.1 1 147.0 0.0 4.74 34.9 178.8 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000078578 Ube2d3 ENSMUST00000197814 - NO_TRANSLATION retained_intron ENSMUSG00000051076 Vtcn1 ENSMUST00000054791 ENSMUSP00000057721 TRANSLATION protein_coding - CCDS17677.1 1 283.0 0.0 1.585 11.0 43.9 0.0 -1,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000036353 P2ry12 ENSMUST00000199609 ENSMUSP00000143521 TRANSLATION protein_coding - CCDS17373.1 3 347.0 0.0 1.8 0.4 106.0 8.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000036353 P2ry12 ENSMUST00000050360 ENSMUSP00000051353 TRANSLATION protein_coding - CCDS17373.1 1 347.0 0.0 1.8 0.4 106.0 8.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000036353 P2ry12 ENSMUST00000199675 ENSMUSP00000143706 TRANSLATION protein_coding stop - 1 116.0 0.0 1.0 0.0 0.0 4.0 -4,-7 0.006 - -2.0 MINOR ENSMUSG00000036353 P2ry12 ENSMUST00000170388 ENSMUSP00000126819 TRANSLATION protein_coding - CCDS17373.1 1 347.0 0.0 1.8 0.4 106.0 8.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000036353 P2ry12 ENSMUST00000196583 ENSMUSP00000143036 TRANSLATION protein_coding - CCDS17373.1 5 347.0 0.0 1.8 0.4 106.0 8.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000040339 Eeig2 ENSMUST00000171143 ENSMUSP00000131904 TRANSLATION protein_coding - CCDS51051.1 1 370.0 0.0 4.53 0.0 100.5 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000040339 Eeig2 ENSMUST00000046924 ENSMUSP00000039751 TRANSLATION protein_coding - - 1 339.0 0.0 3.53 0.0 68.1 0.0 -4,-6 0.0 6 8.058 MINOR ENSMUSG00000062410 Hsd3b3 ENSMUST00000125483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062410 Hsd3b3 ENSMUST00000090743 ENSMUSP00000088246 TRANSLATION protein_coding - CCDS51016.1 1 373.0 35.0 4.0 17.0 380.4 1.0 -4,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000062410 Hsd3b3 ENSMUST00000107018 ENSMUSP00000102632 TRANSLATION protein_coding - CCDS17668.1 1 318.0 25.0 3.0 0.8 251.0 1.0 -4,-7 0.0185 3 4.002 MINOR ENSMUSG00000062410 Hsd3b3 ENSMUST00000107019 ENSMUSP00000102633 TRANSLATION protein_coding - CCDS51016.1 5 373.0 35.0 4.0 17.0 380.4 1.0 -4,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000062410 Hsd3b3 ENSMUST00000094050 ENSMUSP00000091592 TRANSLATION protein_coding - CCDS17668.1 5 318.0 25.0 3.0 0.8 251.0 1.0 -4,-7 0.0185 3 4.002 MINOR ENSMUSG00000062410 Hsd3b3 ENSMUST00000146196 ENSMUSP00000121360 TRANSLATION protein_coding stop - 2 187.0 28.0 3.0 0.0 247.2 0.0 -4,-6 0.0006 3 -2.0 MINOR ENSMUSG00000042031 Lce3b ENSMUST00000046234 ENSMUSP00000046325 TRANSLATION protein_coding - CCDS38520.1 1 98.0 0.0 0.0 0.3 98.3 0.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000039068 Zzz3 ENSMUST00000197987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039068 Zzz3 ENSMUST00000106103 ENSMUSP00000101709 TRANSLATION protein_coding - CCDS84698.1 1 409.0 8.0 4.8 8.8 71.5 0.0 -4,-7 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000039068 Zzz3 ENSMUST00000198468 - NO_TRANSLATION retained_intron ENSMUSG00000039068 Zzz3 ENSMUST00000150802 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039068 Zzz3 ENSMUST00000200570 ENSMUSP00000143693 TRANSLATION protein_coding - - 5 413.0 8.0 4.8 3.0 71.5 0.0 -4,-5 0.3183 4 18.768 MINOR ENSMUSG00000039068 Zzz3 ENSMUST00000106100 ENSMUSP00000101706 TRANSLATION protein_coding - CCDS38674.1 1 910.0 8.0 4.8 0.4 71.5 0.0 -4,-1 0.4 7 18.0 MINOR ENSMUSG00000039068 Zzz3 ENSMUST00000089982 ENSMUSP00000087428 TRANSLATION protein_coding - CCDS71338.1 1 909.0 8.0 4.8 0.4 71.5 0.0 -4,-1 0.4 7 18.0 MINOR ENSMUSG00000039068 Zzz3 ENSMUST00000106101 ENSMUSP00000101707 TRANSLATION protein_coding - CCDS38674.1 5 910.0 8.0 4.8 0.4 71.5 0.0 -4,-1 0.4 7 18.0 MINOR ENSMUSG00000039068 Zzz3 ENSMUST00000135044 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039068 Zzz3 ENSMUST00000138115 - NO_TRANSLATION retained_intron ENSMUSG00000062200 Vmn2r7 ENSMUST00000233255 ENSMUSP00000156563 TRANSLATION protein_coding - - - 915.0 0.0 3.27 1.8 498.1 10.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000062200 Vmn2r7 ENSMUST00000168072 ENSMUSP00000131220 TRANSLATION protein_coding - CCDS50924.1 5 824.0 0.0 2.94 0.1 495.9 10.0 -4,-5 0.3526 - 11.208 MINOR ENSMUSG00000062200 Vmn2r7 ENSMUST00000050123 - NO_TRANSLATION retained_intron ENSMUSG00000062200 Vmn2r7 ENSMUST00000161972 ENSMUSP00000124192 TRANSLATION protein_coding - - 5 915.0 0.0 3.27 1.8 498.1 10.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000033981 Gria2 ENSMUST00000195062 - NO_TRANSLATION retained_intron ENSMUSG00000033981 Gria2 ENSMUST00000194523 - NO_TRANSLATION retained_intron ENSMUSG00000033981 Gria2 ENSMUST00000107745 ENSMUSP00000103374 TRANSLATION protein_coding - CCDS38459.1 5 883.0 11.0 13.3 32.8 556.9 4.0 1,-3 1.0 27 18.0 PRINCIPAL:4 ENSMUSG00000033981 Gria2 ENSMUST00000194164 - NO_TRANSLATION retained_intron ENSMUSG00000033981 Gria2 ENSMUST00000075316 ENSMUSP00000074787 TRANSLATION protein_coding - CCDS17423.1 1 883.0 11.0 13.3 32.8 554.3 4.0 1,-3 0.9758 27 18.0 ALTERNATIVE:1 ENSMUSG00000033981 Gria2 ENSMUST00000192463 ENSMUSP00000141447 TRANSLATION nonsense_mediated_decay - - 1 777.0 11.0 11.3 0.0 529.4 3.0 1,-3 0.0161 24 -2.0 MINOR ENSMUSG00000033981 Gria2 ENSMUST00000193645 - NO_TRANSLATION retained_intron ENSMUSG00000033981 Gria2 ENSMUST00000194383 - NO_TRANSLATION retained_intron ENSMUSG00000027864 Ptgfrn ENSMUST00000102694 ENSMUSP00000099755 TRANSLATION protein_coding - CCDS17680.1 1 879.0 0.0 0.532 2.6 67.9 0.0 4,-3 1.0 25 13.0 PRINCIPAL:1 ENSMUSG00000027864 Ptgfrn ENSMUST00000200065 - NO_TRANSLATION retained_intron ENSMUSG00000027864 Ptgfrn ENSMUST00000198037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019528 Gyg ENSMUST00000178328 ENSMUSP00000136035 TRANSLATION protein_coding - CCDS50873.1 1 333.0 19.0 5.0 17.4 62.1 0.0 -4,-7 1.0 6 21.472 PRINCIPAL:1 ENSMUSG00000019528 Gyg ENSMUST00000184552 ENSMUSP00000138949 TRANSLATION protein_coding start - 5 372.0 19.0 5.0 0.0 68.1 0.0 -4,-6 0.0341 6 -2.0 MINOR ENSMUSG00000019528 Gyg ENSMUST00000135475 - NO_TRANSLATION retained_intron ENSMUSG00000019528 Gyg ENSMUST00000118015 ENSMUSP00000114019 TRANSLATION protein_coding - - 1 377.0 19.0 5.0 0.3 68.1 0.0 -4,-7 0.1306 6 18.0 MINOR ENSMUSG00000040412 Elapor1 ENSMUST00000185128 ENSMUSP00000138870 TRANSLATION nonsense_mediated_decay - - 1 62.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.011 - -2.0 MINOR ENSMUSG00000040412 Elapor1 ENSMUST00000106625 ENSMUSP00000102236 TRANSLATION protein_coding - CCDS84664.1 5 1013.0 0.0 0.975 9.4 0.0 1.0 -3,-6 1.0 17 9.0 PRINCIPAL:1 ENSMUSG00000040412 Elapor1 ENSMUST00000148493 - NO_TRANSLATION retained_intron ENSMUSG00000040412 Elapor1 ENSMUST00000140357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040412 Elapor1 ENSMUST00000148237 - NO_TRANSLATION retained_intron ENSMUSG00000040412 Elapor1 ENSMUST00000048012 ENSMUSP00000040128 TRANSLATION protein_coding - CCDS17761.1 1 911.0 0.0 0.975 5.1 0.0 1.0 -4,-5 0.7435 16 7.464 MINOR ENSMUSG00000038902 Pogz ENSMUST00000142253 - NO_TRANSLATION retained_intron ENSMUSG00000038902 Pogz ENSMUST00000042402 ENSMUSP00000037523 TRANSLATION protein_coding - CCDS50985.1 1 1400.0 22.0 3.172 8.3 82.3 0.0 -4,-5 0.9481 20 16.406 ALTERNATIVE:1 ENSMUSG00000038902 Pogz ENSMUST00000107270 ENSMUSP00000102891 TRANSLATION protein_coding - CCDS17596.1 1 1409.0 22.0 3.172 10.1 82.3 0.0 -4,-5 1.0 20 17.0 PRINCIPAL:4 ENSMUSG00000038902 Pogz ENSMUST00000140397 ENSMUSP00000122492 TRANSLATION nonsense_mediated_decay start - 5 54.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038902 Pogz ENSMUST00000107269 ENSMUSP00000102890 TRANSLATION protein_coding - - 5 1314.0 22.0 3.172 1.0 82.3 0.0 -4,-5 0.3068 20 14.0 MINOR ENSMUSG00000038902 Pogz ENSMUST00000132544 - NO_TRANSLATION retained_intron ENSMUSG00000038902 Pogz ENSMUST00000107265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038902 Pogz ENSMUST00000126235 - NO_TRANSLATION retained_intron ENSMUSG00000038902 Pogz ENSMUST00000107266 ENSMUSP00000102887 TRANSLATION protein_coding - - 5 1356.0 22.0 3.172 6.4 82.3 0.0 -4,-5 0.725 20 15.779 MINOR ENSMUSG00000038902 Pogz ENSMUST00000249403 ENSMUSP00000159753 TRANSLATION protein_coding - - - 1425.0 22.0 3.172 0.0 82.3 0.0 -4,-5 0.2699 20 14.0 MINOR ENSMUSG00000038902 Pogz ENSMUST00000125638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028037 Ifi44 ENSMUST00000029671 ENSMUSP00000029671 TRANSLATION protein_coding - CCDS17911.1 1 422.0 14.0 3.375 0.1 22.2 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000028037 Ifi44 ENSMUST00000133888 - NO_TRANSLATION retained_intron ENSMUSG00000028037 Ifi44 ENSMUST00000149919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028037 Ifi44 ENSMUST00000127733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027889 Ampd2 ENSMUST00000149479 - NO_TRANSLATION retained_intron ENSMUSG00000027889 Ampd2 ENSMUST00000078912 ENSMUSP00000077946 TRANSLATION protein_coding - CCDS84663.1 5 824.0 4.0 12.08 12.4 447.1 0.0 -4,-7 0.9398 15 13.404 PRINCIPAL:3 ENSMUSG00000027889 Ampd2 ENSMUST00000153626 - NO_TRANSLATION retained_intron ENSMUSG00000027889 Ampd2 ENSMUST00000106667 - NO_TRANSLATION retained_intron ENSMUSG00000027889 Ampd2 ENSMUST00000127232 - NO_TRANSLATION retained_intron ENSMUSG00000027889 Ampd2 ENSMUST00000136712 - NO_TRANSLATION retained_intron ENSMUSG00000027889 Ampd2 ENSMUST00000102637 ENSMUSP00000099697 TRANSLATION protein_coding - CCDS17749.1 1 798.0 4.0 12.08 14.4 447.1 0.0 -4,-1 1.0 14 14.0 ALTERNATIVE:1 ENSMUSG00000027889 Ampd2 ENSMUST00000133129 - NO_TRANSLATION retained_intron ENSMUSG00000027889 Ampd2 ENSMUST00000125467 - NO_TRANSLATION retained_intron ENSMUSG00000027889 Ampd2 ENSMUST00000102638 ENSMUSP00000099698 TRANSLATION protein_coding - CCDS17749.1 1 798.0 4.0 12.08 14.4 447.1 0.0 -4,-1 1.0 14 14.0 ALTERNATIVE:1 ENSMUSG00000049288 Lix1l ENSMUST00000199166 - NO_TRANSLATION retained_intron ENSMUSG00000049288 Lix1l ENSMUST00000062058 ENSMUSP00000057623 TRANSLATION protein_coding - CCDS51004.1 1 337.0 0.0 5.15 10.4 459.7 0.0 -4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000068855 H2ac20 ENSMUST00000090782 ENSMUSP00000088288 TRANSLATION protein_coding - CCDS17634.1 - 129.0 0.0 1.0 22.7 135.9 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039047 Pigk ENSMUST00000200224 ENSMUSP00000142966 TRANSLATION nonsense_mediated_decay - - 3 92.0 0.0 1.3 0.0 0.0 0.0 3,-2 0.0026 - -2.0 MINOR ENSMUSG00000039047 Pigk ENSMUST00000159899 ENSMUSP00000123772 TRANSLATION protein_coding - CCDS17919.1 1 395.0 4.0 8.05 9.1 151.7 0.0 3,-2 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000039047 Pigk ENSMUST00000160651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039047 Pigk ENSMUST00000045029 ENSMUSP00000045351 TRANSLATION protein_coding - CCDS17920.1 1 442.0 4.0 8.05 0.0 131.9 0.0 3,-2 0.1426 3 14.812 MINOR ENSMUSG00000039047 Pigk ENSMUST00000162642 ENSMUSP00000123899 TRANSLATION nonsense_mediated_decay - - 1 364.0 4.0 8.05 0.0 151.7 0.0 3,-2 0.1127 4 -2.0 MINOR ENSMUSG00000039047 Pigk ENSMUST00000162835 - NO_TRANSLATION retained_intron ENSMUSG00000039047 Pigk ENSMUST00000051510 ENSMUSP00000142742 TRANSLATION nonsense_mediated_decay start - 1 33.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000039047 Pigk ENSMUST00000159045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039047 Pigk ENSMUST00000161596 ENSMUSP00000123753 TRANSLATION nonsense_mediated_decay - - 1 362.0 4.0 8.05 0.0 151.7 0.0 3,-2 0.1127 4 -2.0 MINOR ENSMUSG00000050947 Amigo1 ENSMUST00000155782 ENSMUSP00000142852 TRANSLATION protein_coding start - 3 188.0 0.0 0.6 0.0 0.0 1.0 -4,-5 0.0023 1 -2.0 MINOR ENSMUSG00000050947 Amigo1 ENSMUST00000106656 ENSMUSP00000102267 TRANSLATION protein_coding - CCDS17753.1 1 492.0 0.0 2.1 11.8 87.0 1.0 4,-1 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000050947 Amigo1 ENSMUST00000106659 ENSMUSP00000102270 TRANSLATION protein_coding - CCDS71305.1 1 309.0 0.0 1.45 0.0 58.5 0.0 4,-1 0.0319 6 8.172 MINOR ENSMUSG00000050947 Amigo1 ENSMUST00000050909 ENSMUSP00000061244 TRANSLATION protein_coding - CCDS17753.1 1 492.0 0.0 2.1 11.8 87.0 1.0 4,-1 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000050947 Amigo1 ENSMUST00000106661 ENSMUSP00000102272 TRANSLATION protein_coding start - 2 206.0 0.0 1.1 0.0 23.8 1.0 -4,-7 0.0015 1 -2.0 MINOR ENSMUSG00000046818 Ddit4l ENSMUST00000167564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046818 Ddit4l ENSMUST00000053855 ENSMUSP00000058896 TRANSLATION protein_coding - CCDS17863.1 1 193.0 0.0 0.7 19.8 157.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000046818 Ddit4l ENSMUST00000165845 ENSMUSP00000127567 TRANSLATION protein_coding stop - 1 100.0 0.0 0.4 0.0 40.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046743 Fat4 ENSMUST00000129182 - NO_TRANSLATION retained_intron ENSMUSG00000046743 Fat4 ENSMUST00000061260 ENSMUSP00000061836 TRANSLATION protein_coding - CCDS17325.1 1 4981.0 317.0 6.53 10.4 2299.6 0.0 0,3 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000027690 Slc2a2 ENSMUST00000169047 - NO_TRANSLATION retained_intron ENSMUSG00000027690 Slc2a2 ENSMUST00000029240 ENSMUSP00000029240 TRANSLATION protein_coding - CCDS50880.1 1 523.0 0.0 8.6 8.7 544.9 12.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000027690 Slc2a2 ENSMUST00000163536 ENSMUSP00000131046 TRANSLATION nonsense_mediated_decay - - 5 159.0 0.0 1.2 0.0 59.9 2.0 -4,-5 0.0016 2 -2.0 MINOR ENSMUSG00000036381 P2ry14 ENSMUST00000065220 ENSMUSP00000066669 TRANSLATION protein_coding - CCDS17371.1 1 338.0 0.0 1.3 13.0 120.8 8.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036381 P2ry14 ENSMUST00000200673 ENSMUSP00000142718 TRANSLATION protein_coding stop - 2 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0126 - -2.0 MINOR ENSMUSG00000036381 P2ry14 ENSMUST00000197841 ENSMUSP00000142934 TRANSLATION protein_coding - CCDS79913.1 5 347.0 0.0 1.3 0.0 120.8 8.0 -4,-6 0.2988 - 12.0 MINOR ENSMUSG00000036381 P2ry14 ENSMUST00000091112 ENSMUSP00000088642 TRANSLATION protein_coding - CCDS17371.1 1 338.0 0.0 1.3 13.0 120.8 8.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036381 P2ry14 ENSMUST00000196081 ENSMUSP00000142601 TRANSLATION protein_coding - CCDS17371.1 1 338.0 0.0 1.3 13.0 120.8 8.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036381 P2ry14 ENSMUST00000198838 ENSMUSP00000143499 TRANSLATION protein_coding stop - 3 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036381 P2ry14 ENSMUST00000200358 ENSMUSP00000142641 TRANSLATION protein_coding stop - 2 110.0 0.0 0.8 0.0 27.1 3.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000036381 P2ry14 ENSMUST00000197220 ENSMUSP00000143070 TRANSLATION protein_coding - CCDS17371.1 1 338.0 0.0 1.3 13.0 120.8 8.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036381 P2ry14 ENSMUST00000196716 - NO_TRANSLATION retained_intron ENSMUSG00000105504 Gbp5 ENSMUST00000197459 ENSMUSP00000142938 TRANSLATION nonsense_mediated_decay - - 1 612.0 10.0 6.3 0.0 518.5 0.0 -4,-6 0.0149 9 -2.0 MINOR ENSMUSG00000105504 Gbp5 ENSMUST00000198803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000105504 Gbp5 ENSMUST00000090127 ENSMUSP00000087587 TRANSLATION protein_coding - CCDS17877.1 1 590.0 15.0 9.14 5.2 722.9 0.0 -4,-6 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000105504 Gbp5 ENSMUST00000196255 ENSMUSP00000143336 TRANSLATION nonsense_mediated_decay - - 5 724.0 15.0 8.94 0.0 714.8 0.0 -4,-6 0.0717 9 -2.0 MINOR ENSMUSG00000105504 Gbp5 ENSMUST00000199578 - NO_TRANSLATION retained_intron ENSMUSG00000036580 Spart ENSMUST00000149767 ENSMUSP00000119719 TRANSLATION protein_coding stop - 5 92.0 0.0 1.0 0.0 30.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000036580 Spart ENSMUST00000117341 ENSMUSP00000113968 TRANSLATION protein_coding - - 1 582.0 0.0 1.75 0.0 161.7 0.0 -4,-5 0.0269 12 6.0 MINOR ENSMUSG00000036580 Spart ENSMUST00000118118 ENSMUSP00000113621 TRANSLATION protein_coding - CCDS38432.1 1 671.0 0.0 1.75 0.0 209.5 0.0 -4,-5 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000036580 Spart ENSMUST00000044116 ENSMUSP00000042367 TRANSLATION protein_coding - CCDS38432.1 1 671.0 0.0 1.75 0.0 209.5 0.0 -4,-5 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000036580 Spart ENSMUST00000199416 - NO_TRANSLATION retained_intron ENSMUSG00000036580 Spart ENSMUST00000200658 - NO_TRANSLATION retained_intron ENSMUSG00000036580 Spart ENSMUST00000146109 ENSMUSP00000121683 TRANSLATION protein_coding stop - 3 116.0 0.0 1.75 0.0 32.6 0.0 -4,-5 0.0434 5 -2.0 MINOR ENSMUSG00000036580 Spart ENSMUST00000107971 ENSMUSP00000103605 TRANSLATION protein_coding - CCDS50908.1 1 614.0 0.0 1.75 0.0 209.5 0.0 -4,-5 0.3223 13 8.0 ALTERNATIVE:2 ENSMUSG00000027775 Mfsd1 ENSMUST00000029344 ENSMUSP00000029344 TRANSLATION protein_coding - CCDS38450.1 1 464.0 0.0 11.65 9.6 104.3 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000027775 Mfsd1 ENSMUST00000192776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027550 Lrrcc1 ENSMUST00000171620 ENSMUSP00000128252 TRANSLATION nonsense_mediated_decay start - 3 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027550 Lrrcc1 ENSMUST00000169799 ENSMUSP00000126592 TRANSLATION protein_coding start/stop - 5 231.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 1 -2.0 MINOR ENSMUSG00000027550 Lrrcc1 ENSMUST00000169079 ENSMUSP00000126560 TRANSLATION protein_coding - CCDS50866.1 1 1026.0 0.0 2.57 7.8 28.0 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000027550 Lrrcc1 ENSMUST00000091325 ENSMUSP00000088875 TRANSLATION protein_coding - CCDS50865.1 1 1010.0 0.0 2.57 0.0 28.0 0.0 -4,-5 0.4318 5 12.0 MINOR ENSMUSG00000027550 Lrrcc1 ENSMUST00000163660 ENSMUSP00000128733 TRANSLATION protein_coding stop - 5 716.0 0.0 0.7 0.0 0.0 0.0 -4,-6 0.0034 4 -2.0 MINOR ENSMUSG00000027550 Lrrcc1 ENSMUST00000108370 ENSMUSP00000104007 TRANSLATION protein_coding - CCDS38390.1 1 993.0 0.0 2.57 1.5 28.0 0.0 -4,-5 0.5757 5 12.148 MINOR ENSMUSG00000027550 Lrrcc1 ENSMUST00000165436 ENSMUSP00000129430 TRANSLATION nonsense_mediated_decay - - 5 178.0 0.0 2.37 0.0 28.0 0.0 -4,-5 0.0038 1 -2.0 MINOR ENSMUSG00000027550 Lrrcc1 ENSMUST00000167858 ENSMUSP00000129368 TRANSLATION protein_coding start - 1 581.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0034 1 -2.0 MINOR ENSMUSG00000014601 Strip1 ENSMUST00000198424 - NO_TRANSLATION retained_intron ENSMUSG00000014601 Strip1 ENSMUST00000200049 - NO_TRANSLATION retained_intron ENSMUSG00000014601 Strip1 ENSMUST00000064759 ENSMUSP00000068587 TRANSLATION protein_coding - CCDS51043.1 1 837.0 0.0 5.15 11.3 354.5 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000014601 Strip1 ENSMUST00000197192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014601 Strip1 ENSMUST00000196416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028089 Chd1l ENSMUST00000197304 - NO_TRANSLATION retained_intron ENSMUSG00000028089 Chd1l ENSMUST00000029730 ENSMUSP00000029730 TRANSLATION protein_coding - CCDS38561.1 1 900.0 7.0 12.269 0.0 254.7 0.0 -4,-6 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000028089 Chd1l ENSMUST00000195962 - NO_TRANSLATION retained_intron ENSMUSG00000027562 Car2 ENSMUST00000192609 ENSMUSP00000141876 TRANSLATION protein_coding stop - 3 115.0 2.0 2.5 0.0 135.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027562 Car2 ENSMUST00000029078 ENSMUSP00000029078 TRANSLATION protein_coding - CCDS17251.1 1 260.0 3.0 6.25 35.8 323.4 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000027562 Car2 ENSMUST00000195520 - NO_TRANSLATION retained_intron ENSMUSG00000047674 Pdha2 ENSMUST00000057860 ENSMUSP00000060774 TRANSLATION protein_coding - CCDS17872.1 - 391.0 23.0 1.0 29.9 395.5 0.0 -4,-2 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000028059 Arhgef2 ENSMUST00000107510 ENSMUSP00000103134 TRANSLATION protein_coding - CCDS57222.1 1 958.0 9.0 8.41 10.3 164.4 0.0 -4,-5 0.9971 32 17.0 ALTERNATIVE:1 ENSMUSG00000028059 Arhgef2 ENSMUST00000176879 ENSMUSP00000134766 TRANSLATION protein_coding stop - 2 130.0 9.0 0.0 0.0 30.0 0.0 -4,-5 0.0008 3 -2.0 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000177120 - NO_TRANSLATION retained_intron ENSMUSG00000028059 Arhgef2 ENSMUST00000176514 - NO_TRANSLATION retained_intron ENSMUSG00000028059 Arhgef2 ENSMUST00000177303 ENSMUSP00000135131 TRANSLATION protein_coding - - 5 956.0 9.0 8.41 10.3 164.4 0.0 -4,-5 0.8457 32 17.0 ALTERNATIVE:1 ENSMUSG00000028059 Arhgef2 ENSMUST00000170653 ENSMUSP00000127843 TRANSLATION protein_coding - CCDS57221.1 1 956.0 9.0 8.41 10.3 164.4 0.0 -4,-5 1.0 32 17.0 PRINCIPAL:4 ENSMUSG00000028059 Arhgef2 ENSMUST00000176401 - NO_TRANSLATION retained_intron ENSMUSG00000028059 Arhgef2 ENSMUST00000175903 ENSMUSP00000135168 TRANSLATION protein_coding - - 5 1183.0 9.0 8.41 0.1 164.4 0.0 -4,-5 0.2472 33 14.0 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000176804 ENSMUSP00000135397 TRANSLATION protein_coding - - 5 983.0 9.0 8.41 9.6 164.4 0.0 -4,-6 0.7841 32 16.775 ALTERNATIVE:1 ENSMUSG00000028059 Arhgef2 ENSMUST00000176272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028059 Arhgef2 ENSMUST00000176226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028059 Arhgef2 ENSMUST00000176079 - NO_TRANSLATION retained_intron ENSMUSG00000028059 Arhgef2 ENSMUST00000176243 ENSMUSP00000135771 TRANSLATION protein_coding stop - 3 203.0 9.0 0.6 0.0 30.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000175779 ENSMUSP00000135177 TRANSLATION protein_coding - - 5 970.0 9.0 8.41 6.3 164.4 0.0 -4,-5 0.7425 32 15.71 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000176539 ENSMUSP00000135612 TRANSLATION protein_coding stop - 3 257.0 9.0 2.01 0.0 30.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000176400 - NO_TRANSLATION retained_intron ENSMUSG00000028059 Arhgef2 ENSMUST00000176500 ENSMUSP00000134834 TRANSLATION protein_coding - - 5 970.0 9.0 8.41 6.3 164.4 0.0 -4,-5 0.7425 32 15.71 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000029694 ENSMUSP00000029694 TRANSLATION protein_coding - CCDS17481.1 1 985.0 9.0 8.41 9.6 164.4 0.0 -4,-6 0.9575 32 16.775 ALTERNATIVE:1 ENSMUSG00000028059 Arhgef2 ENSMUST00000176301 - NO_TRANSLATION retained_intron ENSMUSG00000028059 Arhgef2 ENSMUST00000176307 ENSMUSP00000134843 TRANSLATION protein_coding stop - 5 89.0 9.0 0.0 0.0 30.0 0.0 -4,-5 0.0008 2 -2.0 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000176528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028059 Arhgef2 ENSMUST00000176316 ENSMUSP00000135808 TRANSLATION protein_coding stop - 2 126.0 9.0 0.0 0.0 30.0 0.0 -4,-5 0.0008 3 -2.0 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000177099 - NO_TRANSLATION retained_intron ENSMUSG00000028059 Arhgef2 ENSMUST00000177498 ENSMUSP00000134840 TRANSLATION protein_coding - CCDS57220.1 1 968.0 9.0 8.41 6.3 164.4 0.0 -4,-5 0.8976 32 15.71 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000176123 - NO_TRANSLATION retained_intron ENSMUSG00000028059 Arhgef2 ENSMUST00000175911 ENSMUSP00000135428 TRANSLATION protein_coding - - 5 588.0 9.0 8.41 0.0 164.4 0.0 -4,-5 0.0306 18 14.0 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000175749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028059 Arhgef2 ENSMUST00000177091 - NO_TRANSLATION retained_intron ENSMUSG00000028059 Arhgef2 ENSMUST00000175745 ENSMUSP00000135044 TRANSLATION protein_coding stop - 3 84.0 9.0 0.0 0.0 30.0 0.0 -4,-5 0.0008 2 -2.0 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000177023 ENSMUSP00000134859 TRANSLATION protein_coding stop - 5 208.0 9.0 0.0 0.0 30.0 0.0 -4,-5 0.0004 5 -2.0 MINOR ENSMUSG00000028059 Arhgef2 ENSMUST00000177418 - NO_TRANSLATION retained_intron ENSMUSG00000028116 Myoz2 ENSMUST00000200514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028116 Myoz2 ENSMUST00000029761 ENSMUSP00000029761 TRANSLATION protein_coding - CCDS17816.1 1 264.0 0.0 1.45 18.1 289.5 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000028116 Myoz2 ENSMUST00000143464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028116 Myoz2 ENSMUST00000141588 ENSMUSP00000115450 TRANSLATION nonsense_mediated_decay - - 5 37.0 0.0 0.45 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028116 Myoz2 ENSMUST00000140231 - NO_TRANSLATION retained_intron ENSMUSG00000015947 Fcgr1 ENSMUST00000200420 ENSMUSP00000142661 TRANSLATION nonsense_mediated_decay start - 3 50.0 0.0 0.5 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000015947 Fcgr1 ENSMUST00000029748 ENSMUSP00000029748 TRANSLATION protein_coding - CCDS17639.1 1 404.0 0.0 4.4 0.0 119.6 0.0 3,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000068732 Tmem167b ENSMUST00000090546 ENSMUSP00000088035 TRANSLATION protein_coding - CCDS38601.1 1 74.0 0.0 0.0 34.9 41.3 0.0 -2,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000068732 Tmem167b ENSMUST00000106622 ENSMUSP00000102233 TRANSLATION protein_coding - - 1 122.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0022 - 0.0 MINOR ENSMUSG00000074653 Lrrc31 ENSMUST00000126658 ENSMUSP00000120802 TRANSLATION protein_coding - - 5 507.0 0.0 7.132 0.0 22.7 0.0 -4,-5 0.7498 1 12.0 PRINCIPAL:1 ENSMUSG00000074653 Lrrc31 ENSMUST00000108263 - NO_TRANSLATION retained_intron ENSMUSG00000074653 Lrrc31 ENSMUST00000130731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074653 Lrrc31 ENSMUST00000194840 - NO_TRANSLATION retained_intron ENSMUSG00000001021 S100a3 ENSMUST00000001047 ENSMUSP00000001047 TRANSLATION protein_coding - CCDS17537.1 1 101.0 10.0 2.0 11.3 60.9 0.0 -4,-6 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000001021 S100a3 ENSMUST00000200508 ENSMUSP00000142747 TRANSLATION protein_coding - CCDS17537.1 3 101.0 10.0 2.0 11.3 60.9 0.0 -4,-6 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000001021 S100a3 ENSMUST00000200290 ENSMUSP00000142334 TRANSLATION protein_coding - CCDS17537.1 1 101.0 10.0 2.0 11.3 60.9 0.0 -4,-6 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000001021 S100a3 ENSMUST00000196635 - NO_TRANSLATION retained_intron ENSMUSG00000042642 Flad1 ENSMUST00000107426 ENSMUSP00000103049 TRANSLATION protein_coding - CCDS38492.1 1 492.0 31.0 8.35 11.0 183.0 0.0 -4,-5 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000042642 Flad1 ENSMUST00000107429 ENSMUSP00000103052 TRANSLATION protein_coding stop - 2 174.0 6.0 2.6 0.0 103.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000042642 Flad1 ENSMUST00000162701 ENSMUSP00000125654 TRANSLATION protein_coding stop - 2 99.0 4.0 1.6 0.0 86.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000042642 Flad1 ENSMUST00000050398 ENSMUSP00000051366 TRANSLATION protein_coding - - 1 518.0 31.0 8.35 0.0 183.0 0.0 -4,-5 0.0487 18 18.0 MINOR ENSMUSG00000042642 Flad1 ENSMUST00000129308 ENSMUSP00000122252 TRANSLATION protein_coding - CCDS38492.1 1 492.0 31.0 8.35 11.0 183.0 0.0 -4,-5 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000027671 Actl6a ENSMUST00000193615 ENSMUSP00000141354 TRANSLATION nonsense_mediated_decay - - 3 77.0 5.0 1.08 0.0 32.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027671 Actl6a ENSMUST00000194226 - NO_TRANSLATION retained_intron ENSMUSG00000027671 Actl6a ENSMUST00000153779 - NO_TRANSLATION retained_intron ENSMUSG00000027671 Actl6a ENSMUST00000029214 ENSMUSP00000029214 TRANSLATION protein_coding - CCDS17298.1 1 429.0 21.0 11.05 34.9 495.1 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000027671 Actl6a ENSMUST00000135400 - NO_TRANSLATION retained_intron ENSMUSG00000027671 Actl6a ENSMUST00000193231 ENSMUSP00000141657 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027671 Actl6a ENSMUST00000126144 ENSMUSP00000114317 TRANSLATION protein_coding stop - 5 204.0 8.0 5.76 0.0 213.2 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000027671 Actl6a ENSMUST00000194781 ENSMUSP00000141543 TRANSLATION protein_coding stop - 5 245.0 11.0 6.56 0.0 254.9 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000028126 Pip5k1a ENSMUST00000107231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028126 Pip5k1a ENSMUST00000151335 - NO_TRANSLATION retained_intron ENSMUSG00000028126 Pip5k1a ENSMUST00000107232 ENSMUSP00000102851 TRANSLATION protein_coding - - 5 497.0 4.0 5.25 2.3 311.8 0.0 -4,-7 0.5147 10 12.542 ALTERNATIVE:2 ENSMUSG00000028126 Pip5k1a ENSMUST00000005768 ENSMUSP00000005768 TRANSLATION protein_coding - - 5 545.0 4.0 5.25 3.4 311.8 0.0 -4,-7 0.8098 11 13.0 ALTERNATIVE:2 ENSMUSG00000028126 Pip5k1a ENSMUST00000107229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028126 Pip5k1a ENSMUST00000107233 ENSMUSP00000102852 TRANSLATION protein_coding - CCDS79980.1 1 547.0 4.0 5.25 3.4 311.8 0.0 -3,-6 0.9783 11 13.0 ALTERNATIVE:2 ENSMUSG00000028126 Pip5k1a ENSMUST00000107236 ENSMUSP00000102855 TRANSLATION protein_coding - CCDS38542.1 1 546.0 4.0 5.25 3.4 311.8 0.0 -3,-6 1.0 11 13.0 PRINCIPAL:4 ENSMUSG00000028096 Gpr89 ENSMUST00000139599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028096 Gpr89 ENSMUST00000146645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028096 Gpr89 ENSMUST00000029738 ENSMUSP00000029738 TRANSLATION protein_coding - CCDS17650.1 1 455.0 0.0 0.0 35.1 244.7 8.0 -3,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000028096 Gpr89 ENSMUST00000135533 - NO_TRANSLATION retained_intron ENSMUSG00000028096 Gpr89 ENSMUST00000199586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028096 Gpr89 ENSMUST00000154750 ENSMUSP00000116016 TRANSLATION nonsense_mediated_decay - - 3 111.0 0.0 0.0 0.0 0.0 4.0 -3,-5 0.0024 - -2.0 MINOR ENSMUSG00000091376 Aadacl2 ENSMUST00000169794 ENSMUSP00000129444 TRANSLATION protein_coding - CCDS50917.1 1 401.0 3.0 4.75 12.3 27.4 0.0 2,-3 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000027606 Dnajc5b ENSMUST00000118968 ENSMUSP00000112849 TRANSLATION protein_coding - CCDS17257.1 2 199.0 0.0 2.6 16.2 92.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027606 Dnajc5b ENSMUST00000165693 ENSMUSP00000127515 TRANSLATION protein_coding - CCDS17257.1 3 199.0 0.0 2.6 16.2 92.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027606 Dnajc5b ENSMUST00000029132 ENSMUSP00000029132 TRANSLATION protein_coding - CCDS17257.1 1 199.0 0.0 2.6 16.2 92.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027606 Dnajc5b ENSMUST00000118735 ENSMUSP00000113414 TRANSLATION protein_coding - CCDS17257.1 5 199.0 0.0 2.6 16.2 92.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000033222 Ttf2 ENSMUST00000127357 - NO_TRANSLATION retained_intron ENSMUSG00000033222 Ttf2 ENSMUST00000076941 ENSMUSP00000076208 TRANSLATION protein_coding - CCDS17679.1 1 1138.0 4.0 6.378 0.0 321.8 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000033222 Ttf2 ENSMUST00000151697 ENSMUSP00000119032 TRANSLATION protein_coding start/stop - 3 182.0 0.0 0.72 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033222 Ttf2 ENSMUST00000200506 - NO_TRANSLATION retained_intron ENSMUSG00000033222 Ttf2 ENSMUST00000145811 - NO_TRANSLATION retained_intron ENSMUSG00000040943 Tet2 ENSMUST00000196398 ENSMUSP00000143029 TRANSLATION protein_coding - CCDS84675.1 1 1920.0 3.0 6.52 0.0 514.3 0.0 -4,-5 0.5815 4 8.34 ALTERNATIVE:2 ENSMUSG00000040943 Tet2 ENSMUST00000196292 - NO_TRANSLATION retained_intron ENSMUSG00000040943 Tet2 ENSMUST00000098603 ENSMUSP00000096203 TRANSLATION protein_coding - CCDS51071.1 5 1912.0 3.0 6.85 0.0 514.3 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000040943 Tet2 ENSMUST00000197118 ENSMUSP00000143619 TRANSLATION protein_coding stop - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040943 Tet2 ENSMUST00000198974 ENSMUSP00000143468 TRANSLATION protein_coding start/stop - 3 157.0 4.0 1.75 0.0 149.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000040943 Tet2 ENSMUST00000200203 - NO_TRANSLATION retained_intron ENSMUSG00000040943 Tet2 ENSMUST00000199176 - NO_TRANSLATION retained_intron ENSMUSG00000040943 Tet2 ENSMUST00000199381 - NO_TRANSLATION retained_intron ENSMUSG00000040943 Tet2 ENSMUST00000197211 - NO_TRANSLATION retained_intron ENSMUSG00000040943 Tet2 ENSMUST00000195913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043472 Lce3d ENSMUST00000059053 ENSMUSP00000130993 TRANSLATION protein_coding - CCDS57228.1 1 98.0 0.0 0.0 0.3 103.3 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027499 Pkia ENSMUST00000192468 ENSMUSP00000142120 TRANSLATION protein_coding stop - 3 50.0 0.0 0.8 0.0 84.1 0.0 -4,-5 0.014 1 -2.0 MINOR ENSMUSG00000027499 Pkia ENSMUST00000028999 ENSMUSP00000028999 TRANSLATION protein_coding - CCDS38383.1 1 76.0 0.0 0.8 24.9 100.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000027499 Pkia ENSMUST00000193330 ENSMUSP00000141466 TRANSLATION protein_coding - CCDS38383.1 2 76.0 0.0 0.8 24.9 100.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025759 Mfsd8 ENSMUST00000204374 - NO_TRANSLATION retained_intron ENSMUSG00000025759 Mfsd8 ENSMUST00000204399 ENSMUSP00000145129 TRANSLATION nonsense_mediated_decay start - 5 93.0 0.0 1.58 0.0 0.0 2.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000025759 Mfsd8 ENSMUST00000204017 ENSMUSP00000145458 TRANSLATION protein_coding stop - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025759 Mfsd8 ENSMUST00000204907 ENSMUSP00000144842 TRANSLATION protein_coding stop - 5 187.0 0.0 4.32 0.0 76.1 7.0 -4,-5 0.0029 2 -2.0 MINOR ENSMUSG00000025759 Mfsd8 ENSMUST00000204454 - NO_TRANSLATION retained_intron ENSMUSG00000025759 Mfsd8 ENSMUST00000026859 ENSMUSP00000026859 TRANSLATION protein_coding - CCDS17329.1 1 519.0 0.0 7.19 10.9 103.3 15.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000025759 Mfsd8 ENSMUST00000204054 ENSMUSP00000145074 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028007 Snx7 ENSMUST00000196421 - NO_TRANSLATION retained_intron ENSMUSG00000028007 Snx7 ENSMUST00000167877 ENSMUSP00000125804 TRANSLATION protein_coding start - 5 362.0 0.0 2.35 0.0 41.4 0.0 -4,-5 0.0002 4 -2.0 MINOR ENSMUSG00000028007 Snx7 ENSMUST00000029639 ENSMUSP00000029639 TRANSLATION protein_coding - CCDS38615.2 1 445.0 0.0 2.85 4.1 89.5 0.0 -4,-5 1.0 10 10.0 PRINCIPAL:2 ENSMUSG00000028007 Snx7 ENSMUST00000198499 ENSMUSP00000143230 TRANSLATION protein_coding - - 5 387.0 0.0 2.85 2.9 89.5 0.0 -4,-5 0.6137 9 9.226 ALTERNATIVE:2 ENSMUSG00000028007 Snx7 ENSMUST00000169812 ENSMUSP00000128007 TRANSLATION protein_coding start - 1 386.0 0.0 2.85 0.0 89.5 0.0 -4,-5 0.0225 7 -2.0 MINOR ENSMUSG00000000340 Dbt ENSMUST00000197201 ENSMUSP00000143696 TRANSLATION protein_coding stop - 3 27.0 0.0 0.75 0.0 40.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000340 Dbt ENSMUST00000196376 - NO_TRANSLATION retained_intron ENSMUSG00000000340 Dbt ENSMUST00000000349 ENSMUSP00000000349 TRANSLATION protein_coding - CCDS17787.1 1 482.0 4.0 8.4 13.8 394.2 0.0 -4,0 1.0 24 20.0 PRINCIPAL:1 ENSMUSG00000000340 Dbt ENSMUST00000199614 ENSMUSP00000143713 TRANSLATION nonsense_mediated_decay - - 3 60.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000004032 Gstm5 ENSMUST00000169365 ENSMUSP00000128306 TRANSLATION protein_coding - - 2 158.0 2.0 4.75 0.7 65.1 0.0 -4,-5 0.0097 7 4.116 MINOR ENSMUSG00000004032 Gstm5 ENSMUST00000004134 ENSMUSP00000004134 TRANSLATION protein_coding - CCDS17741.1 1 224.0 10.0 6.75 7.8 140.9 0.0 -4,-7 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000004032 Gstm5 ENSMUST00000170058 ENSMUSP00000125913 TRANSLATION nonsense_mediated_decay - - 5 69.0 4.0 1.25 0.0 30.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000004032 Gstm5 ENSMUST00000167523 ENSMUSP00000127840 TRANSLATION nonsense_mediated_decay - - 3 73.0 8.0 2.0 0.0 40.1 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000004032 Gstm5 ENSMUST00000167387 ENSMUSP00000127020 TRANSLATION protein_coding - - 5 158.0 2.0 4.75 0.7 65.1 0.0 -4,-5 0.0097 7 4.116 MINOR ENSMUSG00000004032 Gstm5 ENSMUST00000172247 ENSMUSP00000129426 TRANSLATION protein_coding stop - 2 215.0 10.0 5.9 0.0 137.6 0.0 -4,-7 0.0208 12 -2.0 MINOR ENSMUSG00000027840 Wnt2b ENSMUST00000029429 ENSMUSP00000029429 TRANSLATION protein_coding - CCDS17706.1 1 389.0 0.0 4.0 9.4 404.8 0.0 -3,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000027840 Wnt2b ENSMUST00000198108 - NO_TRANSLATION retained_intron ENSMUSG00000027829 Ccnl1 ENSMUST00000144810 ENSMUSP00000122824 TRANSLATION nonsense_mediated_decay start - 5 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027829 Ccnl1 ENSMUST00000122919 - NO_TRANSLATION retained_intron ENSMUSG00000027829 Ccnl1 ENSMUST00000142153 - NO_TRANSLATION retained_intron ENSMUSG00000027829 Ccnl1 ENSMUST00000145186 ENSMUSP00000122314 TRANSLATION nonsense_mediated_decay start - 3 22.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000027829 Ccnl1 ENSMUST00000135719 ENSMUSP00000118394 TRANSLATION nonsense_mediated_decay start - 5 146.0 0.0 2.8 0.0 34.4 0.0 -4,-5 0.001 2 -2.0 MINOR ENSMUSG00000027829 Ccnl1 ENSMUST00000149729 - NO_TRANSLATION retained_intron ENSMUSG00000027829 Ccnl1 ENSMUST00000154585 ENSMUSP00000119229 TRANSLATION nonsense_mediated_decay - - 5 178.0 0.0 2.8 0.0 34.4 0.0 -1,1 0.001 - -2.0 MINOR ENSMUSG00000027829 Ccnl1 ENSMUST00000150304 - NO_TRANSLATION retained_intron ENSMUSG00000027829 Ccnl1 ENSMUST00000132998 - NO_TRANSLATION retained_intron ENSMUSG00000027829 Ccnl1 ENSMUST00000148623 - NO_TRANSLATION retained_intron ENSMUSG00000027829 Ccnl1 ENSMUST00000149160 - NO_TRANSLATION retained_intron ENSMUSG00000027829 Ccnl1 ENSMUST00000029416 ENSMUSP00000029416 TRANSLATION protein_coding - CCDS17390.1 1 532.0 0.0 7.55 2.1 62.1 0.0 -1,1 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000027829 Ccnl1 ENSMUST00000129002 ENSMUSP00000118377 TRANSLATION nonsense_mediated_decay - - 1 178.0 0.0 2.8 0.0 34.4 0.0 -1,1 0.001 2 -2.0 MINOR ENSMUSG00000027829 Ccnl1 ENSMUST00000146284 - NO_TRANSLATION retained_intron ENSMUSG00000041912 Tdrkh ENSMUST00000166032 ENSMUSP00000129635 TRANSLATION protein_coding - CCDS38534.1 1 560.0 0.0 8.43 7.8 223.3 2.0 -4,-7 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000041912 Tdrkh ENSMUST00000200486 ENSMUSP00000142584 TRANSLATION protein_coding - - 3 296.0 0.0 3.68 1.1 121.6 2.0 -4,-7 0.0184 10 0.03 MINOR ENSMUSG00000041912 Tdrkh ENSMUST00000197495 ENSMUSP00000143135 TRANSLATION protein_coding - - 5 515.0 0.0 7.1 1.0 152.3 2.0 -4,-7 0.0433 11 5.082 MINOR ENSMUSG00000041912 Tdrkh ENSMUST00000196606 ENSMUSP00000143102 TRANSLATION protein_coding - - 5 556.0 0.0 8.43 7.8 203.3 2.0 -4,-7 0.7265 13 12.8 MINOR ENSMUSG00000041912 Tdrkh ENSMUST00000045245 ENSMUSP00000041002 TRANSLATION protein_coding - CCDS38534.1 1 560.0 0.0 8.43 7.8 223.3 2.0 -4,-7 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000041912 Tdrkh ENSMUST00000196386 ENSMUSP00000143256 TRANSLATION protein_coding - - 1 140.0 0.0 1.0 0.0 53.8 2.0 -4,-7 0.0 3 0.0 MINOR ENSMUSG00000041912 Tdrkh ENSMUST00000197876 ENSMUSP00000142779 TRANSLATION nonsense_mediated_decay - - 2 50.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0005 2 -2.0 MINOR ENSMUSG00000041912 Tdrkh ENSMUST00000197901 ENSMUSP00000142561 TRANSLATION protein_coding - CCDS38534.1 5 560.0 0.0 8.43 7.8 223.3 2.0 -4,-7 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000001052 Sec24b ENSMUST00000164758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001052 Sec24b ENSMUST00000165873 ENSMUSP00000132861 TRANSLATION protein_coding start/stop - 1 765.0 4.0 12.0 0.0 412.7 0.0 -4,-7 0.0051 16 -2.0 MINOR ENSMUSG00000001052 Sec24b ENSMUST00000170163 - NO_TRANSLATION retained_intron ENSMUSG00000001052 Sec24b ENSMUST00000168675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001052 Sec24b ENSMUST00000168908 - NO_TRANSLATION retained_intron ENSMUSG00000001052 Sec24b ENSMUST00000172324 - NO_TRANSLATION retained_intron ENSMUSG00000001052 Sec24b ENSMUST00000165889 - NO_TRANSLATION retained_intron ENSMUSG00000001052 Sec24b ENSMUST00000001079 ENSMUSP00000001079 TRANSLATION protein_coding - CCDS17840.1 1 1251.0 4.0 18.0 0.0 548.8 0.0 -4,-7 1.0 24 16.0 PRINCIPAL:1 ENSMUSG00000001052 Sec24b ENSMUST00000168644 ENSMUSP00000126923 TRANSLATION protein_coding start/stop - 5 411.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000028139 Riiad1 ENSMUST00000029785 ENSMUSP00000029785 TRANSLATION protein_coding - CCDS38535.1 1 119.0 0.0 2.6 0.0 0.0 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000028139 Riiad1 ENSMUST00000183915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028139 Riiad1 ENSMUST00000184619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086564 Cd101 ENSMUST00000167086 ENSMUSP00000126027 TRANSLATION protein_coding - - 5 1029.0 0.0 0.932 0.0 91.9 1.0 -4,-7 0.3808 2 8.0 ALTERNATIVE:2 ENSMUSG00000086564 Cd101 ENSMUST00000147399 ENSMUSP00000116643 TRANSLATION protein_coding - CCDS51020.1 1 1033.0 0.0 0.932 0.0 91.9 1.0 2,-1 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000028023 Pitx2 ENSMUST00000106382 ENSMUSP00000101990 TRANSLATION protein_coding - CCDS38630.1 1 271.0 0.0 2.0 27.2 113.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028023 Pitx2 ENSMUST00000172645 ENSMUSP00000134692 TRANSLATION protein_coding - CCDS71316.1 1 304.0 0.0 2.0 2.0 113.5 0.0 -4,-5 0.3176 - 12.152 MINOR ENSMUSG00000028023 Pitx2 ENSMUST00000174661 ENSMUSP00000133756 TRANSLATION protein_coding - CCDS17830.1 1 317.0 0.0 2.0 15.5 113.5 0.0 -4,-5 0.8438 - 14.212 MINOR ENSMUSG00000028023 Pitx2 ENSMUST00000174623 ENSMUSP00000139328 TRANSLATION protein_coding - - 2 164.0 0.0 1.24 0.0 54.5 0.0 -4,-7 0.0003 - 6.18 MINOR ENSMUSG00000028023 Pitx2 ENSMUST00000173645 ENSMUSP00000134301 TRANSLATION protein_coding stop - 5 61.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028023 Pitx2 ENSMUST00000029657 ENSMUSP00000029657 TRANSLATION protein_coding - - 5 99.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000028023 Pitx2 ENSMUST00000042587 ENSMUSP00000047359 TRANSLATION protein_coding - CCDS38631.1 1 324.0 0.0 2.0 15.2 113.5 0.0 -4,-7 0.8111 - 14.168 MINOR ENSMUSG00000028023 Pitx2 ENSMUST00000187145 - NO_TRANSLATION retained_intron ENSMUSG00000040151 Hs2st1 ENSMUST00000199680 - NO_TRANSLATION retained_intron ENSMUSG00000040151 Hs2st1 ENSMUST00000160690 ENSMUSP00000123816 TRANSLATION nonsense_mediated_decay - - 3 75.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000040151 Hs2st1 ENSMUST00000043325 ENSMUSP00000043066 TRANSLATION protein_coding - CCDS17883.1 1 356.0 17.0 5.75 0.0 141.4 0.0 -1,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000039037 St6galnac5 ENSMUST00000161757 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039037 St6galnac5 ENSMUST00000044278 ENSMUSP00000036227 TRANSLATION protein_coding - CCDS38676.1 1 335.0 12.0 3.0 7.7 124.6 0.0 -1,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000028003 Lrat ENSMUST00000029632 ENSMUSP00000029632 TRANSLATION protein_coding - CCDS17430.1 1 231.0 0.0 2.0 14.1 142.0 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037730 Mynn ENSMUST00000047502 ENSMUSP00000041034 TRANSLATION protein_coding - CCDS79891.1 1 582.0 28.0 5.26 8.0 211.3 0.0 -4,-5 0.5131 3 14.258 MINOR ENSMUSG00000037730 Mynn ENSMUST00000193736 - NO_TRANSLATION retained_intron ENSMUSG00000037730 Mynn ENSMUST00000194587 - NO_TRANSLATION retained_intron ENSMUSG00000037730 Mynn ENSMUST00000195751 ENSMUSP00000141450 TRANSLATION nonsense_mediated_decay - - 1 60.0 0.0 1.0 0.0 29.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037730 Mynn ENSMUST00000195396 ENSMUSP00000141623 TRANSLATION nonsense_mediated_decay - - 1 60.0 0.0 1.0 0.0 29.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037730 Mynn ENSMUST00000192715 ENSMUSP00000141951 TRANSLATION protein_coding - CCDS17284.1 1 610.0 32.0 6.01 16.0 235.4 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000051777 Iqcj ENSMUST00000063263 ENSMUSP00000069544 TRANSLATION protein_coding - CCDS57217.1 1 110.0 0.0 0.0 0.0 220.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027556 Car1 ENSMUST00000144327 ENSMUSP00000120495 TRANSLATION protein_coding stop - 3 92.0 3.0 2.83 0.0 112.3 0.0 -4,-5 0.0005 4 -2.0 MINOR ENSMUSG00000027556 Car1 ENSMUST00000094365 ENSMUSP00000091925 TRANSLATION protein_coding - CCDS17248.1 1 261.0 3.0 6.33 31.8 311.8 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000027556 Car1 ENSMUST00000181860 ENSMUSP00000137926 TRANSLATION protein_coding - CCDS17248.1 1 261.0 3.0 6.33 31.8 311.8 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000085007 Smim43 ENSMUST00000238836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000085007 Smim43 ENSMUST00000199064 - NO_TRANSLATION TEC ENSMUSG00000085007 Smim43 ENSMUST00000124606 ENSMUSP00000153318 TRANSLATION protein_coding - - 1 63.0 0.0 0.0 3.2 0.0 0.0 -1,-5 0.6237 1 1.0 PRINCIPAL:1 ENSMUSG00000028005 Gucy1b1 ENSMUST00000193597 ENSMUSP00000142119 TRANSLATION protein_coding - CCDS79928.1 1 609.0 1.0 9.61 0.0 579.0 0.0 -4,-5 0.0799 21 8.448 MINOR ENSMUSG00000028005 Gucy1b1 ENSMUST00000192508 - NO_TRANSLATION retained_intron ENSMUSG00000028005 Gucy1b1 ENSMUST00000193085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028005 Gucy1b1 ENSMUST00000029635 ENSMUSP00000029635 TRANSLATION protein_coding - CCDS38460.1 1 620.0 1.0 10.74 16.7 600.5 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000038550 Ciart ENSMUST00000159863 ENSMUSP00000135522 TRANSLATION protein_coding stop - 3 55.0 0.0 2.08 0.0 132.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000038550 Ciart ENSMUST00000036418 ENSMUSP00000049308 TRANSLATION protein_coding - CCDS50997.1 1 375.0 0.0 3.43 0.0 552.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038550 Ciart ENSMUST00000161867 ENSMUSP00000124831 TRANSLATION protein_coding start - 3 115.0 0.0 3.43 0.0 255.1 0.0 -4,-5 0.0302 - -2.0 MINOR ENSMUSG00000038550 Ciart ENSMUST00000161994 ENSMUSP00000124125 TRANSLATION protein_coding stop - 5 154.0 0.0 1.93 0.0 147.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038550 Ciart ENSMUST00000159739 ENSMUSP00000124943 TRANSLATION protein_coding - CCDS50997.1 1 375.0 0.0 3.43 0.0 552.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038550 Ciart ENSMUST00000161866 ENSMUSP00000135072 TRANSLATION protein_coding stop - 2 185.0 0.0 2.33 0.0 361.2 0.0 -4,-2 0.0012 - -2.0 MINOR ENSMUSG00000052310 Slc39a1 ENSMUST00000015467 ENSMUSP00000076012 TRANSLATION protein_coding - CCDS17525.1 1 324.0 0.0 0.0 12.5 195.8 0.0 -4,-7 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000012042 4930579F01Rik ENSMUST00000012186 ENSMUSP00000012186 TRANSLATION protein_coding - CCDS51081.1 1 325.0 0.0 1.25 0.0 115.5 0.0 -4,-6 0.3637 - 9.318 MINOR ENSMUSG00000012042 4930579F01Rik ENSMUST00000199804 ENSMUSP00000158968 TRANSLATION protein_coding - - 3 327.0 0.0 1.25 0.0 160.2 0.0 -4,-2 0.806 - 12.0 PRINCIPAL:1 ENSMUSG00000012042 4930579F01Rik ENSMUST00000199293 ENSMUSP00000142940 TRANSLATION protein_coding - CCDS80031.1 1 200.0 0.0 1.25 0.0 88.4 0.0 -4,-5 0.1613 - 7.692 MINOR ENSMUSG00000050144 Slc25a44 ENSMUST00000057935 ENSMUSP00000057871 TRANSLATION protein_coding - CCDS50950.1 1 333.0 10.0 1.36 0.0 174.5 2.0 -4,-5 0.1935 8 18.0 MINOR ENSMUSG00000050144 Slc25a44 ENSMUST00000193433 ENSMUSP00000141465 TRANSLATION protein_coding - CCDS79943.1 1 314.0 10.0 1.36 25.1 174.5 2.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000050144 Slc25a44 ENSMUST00000168755 ENSMUSP00000130075 TRANSLATION protein_coding - CCDS50949.1 1 228.0 10.0 0.32 0.0 117.7 2.0 -4,-5 0.0189 3 10.002 MINOR ENSMUSG00000050144 Slc25a44 ENSMUST00000195657 ENSMUSP00000141780 TRANSLATION protein_coding - CCDS79943.1 1 314.0 10.0 1.36 25.1 174.5 2.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000037161 Mgarp ENSMUST00000157054 - NO_TRANSLATION retained_intron ENSMUSG00000037161 Mgarp ENSMUST00000141156 ENSMUSP00000123126 TRANSLATION protein_coding - - 2 297.0 0.0 1.0 0.0 262.5 1.0 -4,-7 0.0539 2 8.0 ALTERNATIVE:2 ENSMUSG00000037161 Mgarp ENSMUST00000108046 ENSMUSP00000103681 TRANSLATION protein_coding - - 1 275.0 0.0 1.0 0.0 210.7 1.0 -4,-2 0.0593 1 6.0 MINOR ENSMUSG00000037161 Mgarp ENSMUST00000145938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037161 Mgarp ENSMUST00000038154 ENSMUSP00000040703 TRANSLATION protein_coding - CCDS17338.1 1 283.0 0.0 1.0 0.0 276.5 1.0 -4,-1 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000027833 Shox2 ENSMUST00000162098 ENSMUSP00000123838 TRANSLATION protein_coding start - 1 240.0 0.0 2.125 0.0 119.6 0.0 -4,-6 0.0118 - -2.0 MINOR ENSMUSG00000027833 Shox2 ENSMUST00000029422 ENSMUSP00000029422 TRANSLATION protein_coding - CCDS17393.1 1 331.0 0.0 2.125 6.0 119.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027833 Shox2 ENSMUST00000162439 ENSMUSP00000124924 TRANSLATION protein_coding - CCDS79922.1 1 190.0 0.0 1.825 1.7 119.6 0.0 -4,-5 0.1993 - 11.434 MINOR ENSMUSG00000027833 Shox2 ENSMUST00000195261 ENSMUSP00000141625 TRANSLATION protein_coding stop - 5 108.0 0.0 1.825 0.0 88.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027833 Shox2 ENSMUST00000162060 ENSMUSP00000125031 TRANSLATION protein_coding - CCDS79922.1 3 190.0 0.0 1.825 1.7 119.6 0.0 -4,-5 0.1993 - 11.434 MINOR ENSMUSG00000104301 Wdr49 ENSMUST00000204341 ENSMUSP00000145379 TRANSLATION protein_coding start/stop - 5 448.0 4.0 1.52 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000104301 Wdr49 ENSMUST00000193989 ENSMUSP00000144721 TRANSLATION protein_coding - - 5 710.0 0.0 3.55 0.0 38.8 0.0 -4,-7 0.788 - 12.0 PRINCIPAL:1 ENSMUSG00000104301 Wdr49 ENSMUST00000204982 - NO_TRANSLATION retained_intron ENSMUSG00000104301 Wdr49 ENSMUST00000203169 ENSMUSP00000144789 TRANSLATION protein_coding stop - 5 511.0 4.0 1.52 0.0 0.0 0.0 -4,-6 0.0019 - -2.0 MINOR ENSMUSG00000096879 Tdpoz8 ENSMUST00000195847 ENSMUSP00000141677 TRANSLATION protein_coding - - - 318.0 0.0 2.0 0.0 94.7 0.0 -4,-5 0.7508 - 12.0 PRINCIPAL:1 ENSMUSG00000096879 Tdpoz8 ENSMUST00000194595 ENSMUSP00000141574 TRANSLATION protein_coding - CCDS38523.1 1 244.0 0.0 1.0 0.0 94.7 0.0 -4,-5 0.1756 - 9.0 MINOR ENSMUSG00000096879 Tdpoz8 ENSMUST00000179064 ENSMUSP00000136458 TRANSLATION protein_coding - CCDS38523.1 5 244.0 0.0 1.0 0.0 94.7 0.0 -4,-5 0.1756 - 9.0 MINOR ENSMUSG00000028360 Slc44a5 ENSMUST00000239250 ENSMUSP00000159268 TRANSLATION protein_coding - - - 721.0 0.0 0.0 0.0 353.2 9.0 -4,-5 0.162 4 6.0 MINOR ENSMUSG00000028360 Slc44a5 ENSMUST00000128362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028360 Slc44a5 ENSMUST00000089948 ENSMUSP00000087394 TRANSLATION protein_coding - CCDS38679.1 1 710.0 0.0 0.0 8.4 350.9 9.0 -4,-7 1.0 5 8.862 PRINCIPAL:1 ENSMUSG00000028360 Slc44a5 ENSMUST00000144677 - NO_TRANSLATION retained_intron ENSMUSG00000054199 Gon4l ENSMUST00020183812 ENSMUSP00001091669 TRANSLATION protein_coding stop - - 177.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000054199 Gon4l ENSMUST00020183802 ENSMUSP00001091664 TRANSLATION protein_coding stop - - 75.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000054199 Gon4l ENSMUST00000081695 ENSMUSP00000080397 TRANSLATION protein_coding - - 5 2260.0 0.0 1.8 0.1 24.8 0.0 -4,-6 0.3702 16 8.0 ALTERNATIVE:2 ENSMUSG00000054199 Gon4l ENSMUST00000198113 - NO_TRANSLATION retained_intron ENSMUSG00000054199 Gon4l ENSMUST00020183807 ENSMUSP00001091670 TRANSLATION protein_coding stop - - 138.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000054199 Gon4l ENSMUST00000107498 ENSMUSP00000103122 TRANSLATION protein_coding - CCDS50954.1 1 2242.0 0.0 1.8 0.0 24.8 0.0 -4,-6 1.0 16 8.0 PRINCIPAL:2 ENSMUSG00000054199 Gon4l ENSMUST00020183806 ENSMUSP00001091673 TRANSLATION nonsense_mediated_decay start - - 64.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000054199 Gon4l ENSMUST00000212694 ENSMUSP00000148624 TRANSLATION nonsense_mediated_decay start - 2 141.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045475 Lce3c ENSMUST00000055375 ENSMUSP00000050666 TRANSLATION protein_coding - CCDS38521.1 1 98.0 0.0 0.0 0.4 104.0 0.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000091721 Gimd1 ENSMUST00000212852 ENSMUSP00000148596 TRANSLATION protein_coding - - 5 99.0 7.0 1.5 0.0 37.8 0.0 -4,-5 0.0 1 5.61 MINOR ENSMUSG00000091721 Gimd1 ENSMUST00000212594 ENSMUSP00000148464 TRANSLATION protein_coding - CCDS57257.1 5 217.0 14.0 3.5 10.7 99.6 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000091721 Gimd1 ENSMUST00000163241 ENSMUSP00000126832 TRANSLATION protein_coding - CCDS57257.1 5 217.0 14.0 3.5 10.7 99.6 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000091721 Gimd1 ENSMUST00000196701 ENSMUSP00000142630 TRANSLATION protein_coding - CCDS57257.1 3 217.0 14.0 3.5 10.7 99.6 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000091721 Gimd1 ENSMUST00000212804 ENSMUSP00000148832 TRANSLATION protein_coding - CCDS57257.1 5 217.0 14.0 3.5 10.7 99.6 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000036863 Syde2 ENSMUST00000195918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036863 Syde2 ENSMUST00000212479 ENSMUSP00000148542 TRANSLATION protein_coding - - 5 1047.0 0.0 1.32 0.0 153.9 0.0 -3,-5 0.9808 6 8.0 ALTERNATIVE:2 ENSMUSG00000036863 Syde2 ENSMUST00000039517 ENSMUSP00000041897 TRANSLATION protein_coding - CCDS57259.1 1 1314.0 0.0 1.32 0.0 153.9 0.0 -4,0 0.9345 6 8.0 ALTERNATIVE:2 ENSMUSG00000036863 Syde2 ENSMUST00000200546 ENSMUSP00000142954 TRANSLATION protein_coding - - 1 1046.0 0.0 1.32 0.0 153.9 0.0 -3,-5 0.9896 6 8.0 PRINCIPAL:4 ENSMUSG00000028070 Naxe ENSMUST00000029708 ENSMUSP00000029708 TRANSLATION protein_coding - CCDS17464.1 1 282.0 5.0 5.0 5.1 126.5 0.0 0,2 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000105518 Gm42674 ENSMUST00000107330 ENSMUSP00000102953 TRANSLATION nonsense_mediated_decay,RT start - 3 64.0 5.0 1.33 0.0 0.0 0.0 -4,-5 0.6598 - -2.0 PRINCIPAL:1 ENSMUSG00000050075 Gpr171 ENSMUST00000085040 ENSMUSP00000082115 TRANSLATION protein_coding - CCDS17370.1 1 319.0 0.0 0.8 14.9 87.4 0.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038298 Pdzk1 ENSMUST00000128789 ENSMUSP00000123166 TRANSLATION protein_coding stop - 2 50.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038298 Pdzk1 ENSMUST00000153256 ENSMUSP00000118846 TRANSLATION nonsense_mediated_decay - CCDS17649.1 1 519.0 0.0 7.9 8.0 201.8 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000038298 Pdzk1 ENSMUST00000138014 ENSMUSP00000115584 TRANSLATION protein_coding stop - 3 153.0 0.0 2.8985 0.0 45.3 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000038298 Pdzk1 ENSMUST00000107070 ENSMUSP00000102685 TRANSLATION protein_coding - CCDS17649.1 1 519.0 0.0 7.9 8.0 201.8 0.0 -4,-5 1.0 29 15.0 PRINCIPAL:1 ENSMUSG00000038298 Pdzk1 ENSMUST00000135031 ENSMUSP00000114157 TRANSLATION protein_coding stop - 2 125.0 0.0 2.75 0.0 45.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000038298 Pdzk1 ENSMUST00000058865 ENSMUSP00000058936 TRANSLATION protein_coding - CCDS17649.1 1 519.0 0.0 7.9 8.0 201.8 0.0 -4,-5 1.0 29 15.0 PRINCIPAL:1 ENSMUSG00000038298 Pdzk1 ENSMUST00000107069 ENSMUSP00000102684 TRANSLATION protein_coding - CCDS17649.1 1 519.0 0.0 7.9 8.0 201.8 0.0 -4,-5 1.0 29 15.0 PRINCIPAL:1 ENSMUSG00000028188 Spata1 ENSMUST00000197684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028188 Spata1 ENSMUST00000029839 ENSMUSP00000029839 TRANSLATION protein_coding - CCDS38666.1 1 444.0 0.0 0.0 0.1 177.6 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028188 Spata1 ENSMUST00000123421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028188 Spata1 ENSMUST00000195949 ENSMUSP00000143495 TRANSLATION protein_coding start/stop - 3 137.0 0.0 0.0 0.0 142.2 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000028188 Spata1 ENSMUST00000093951 ENSMUSP00000091483 TRANSLATION protein_coding - - 1 114.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000028188 Spata1 ENSMUST00000200488 ENSMUSP00000143358 TRANSLATION protein_coding start - 3 75.0 0.0 0.0 0.0 31.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028188 Spata1 ENSMUST00000197980 ENSMUSP00000142800 TRANSLATION protein_coding - CCDS38666.1 1 444.0 0.0 0.0 0.1 177.6 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074403 H3c13 ENSMUST00000098843 ENSMUSP00000096442 TRANSLATION protein_coding - CCDS17638.1 - 136.0 0.0 1.0 31.8 181.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048796 Cyb561d1 ENSMUST00000155099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048796 Cyb561d1 ENSMUST00000106655 ENSMUSP00000102266 TRANSLATION protein_coding - CCDS38598.1 1 229.0 0.0 2.33 9.5 131.7 6.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048796 Cyb561d1 ENSMUST00000106654 ENSMUSP00000102265 TRANSLATION protein_coding - CCDS38599.1 1 171.0 0.0 1.0 9.5 119.9 5.0 -4,-5 0.6608 - 10.866 MINOR ENSMUSG00000048796 Cyb561d1 ENSMUST00000065664 ENSMUSP00000070361 TRANSLATION protein_coding - CCDS38599.1 1 171.0 0.0 1.0 9.5 119.9 5.0 -4,-5 0.6608 - 10.866 MINOR ENSMUSG00000068856 Sf3b4 ENSMUST00000076372 ENSMUSP00000075709 TRANSLATION protein_coding - CCDS17630.1 1 424.0 0.0 2.3 14.7 131.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000068856 Sf3b4 ENSMUST00000153977 - NO_TRANSLATION retained_intron ENSMUSG00000027869 Hsd3b6 ENSMUST00000029463 ENSMUSP00000029463 TRANSLATION protein_coding - CCDS17669.1 1 373.0 28.0 3.0 15.0 373.4 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000027869 Hsd3b6 ENSMUST00000170847 ENSMUSP00000129911 TRANSLATION protein_coding - CCDS17669.1 1 373.0 28.0 3.0 15.0 373.4 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000027869 Hsd3b6 ENSMUST00000196706 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027751 Supt20 ENSMUST00000170552 ENSMUSP00000131454 TRANSLATION protein_coding - CCDS38431.1 1 531.0 0.0 0.56334 1.4 127.9 0.0 -4,-5 1.0 4 7.0 PRINCIPAL:2 ENSMUSG00000027751 Supt20 ENSMUST00000200439 ENSMUSP00000143059 TRANSLATION nonsense_mediated_decay - - 1 530.0 0.0 0.56334 1.4 131.1 0.0 -4,-5 0.5928 4 -2.0 MINOR ENSMUSG00000027751 Supt20 ENSMUST00000197502 ENSMUSP00000143750 TRANSLATION protein_coding - - 5 784.0 0.0 0.56334 0.3 130.2 0.0 -4,-5 0.1313 5 6.0 ALTERNATIVE:2 ENSMUSG00000027751 Supt20 ENSMUST00000200450 - NO_TRANSLATION retained_intron ENSMUSG00000027751 Supt20 ENSMUST00000199652 ENSMUSP00000142648 TRANSLATION protein_coding stop - 5 181.0 0.0 0.16334 0.0 75.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027751 Supt20 ENSMUST00000200441 ENSMUSP00000143231 TRANSLATION protein_coding - - 5 275.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.002 1 0.0 MINOR ENSMUSG00000027751 Supt20 ENSMUST00000199674 ENSMUSP00000142948 TRANSLATION nonsense_mediated_decay - - 5 529.0 0.0 0.56334 1.4 131.1 0.0 -4,-5 0.3841 4 -2.0 MINOR ENSMUSG00000027751 Supt20 ENSMUST00000197568 - NO_TRANSLATION retained_intron ENSMUSG00000027751 Supt20 ENSMUST00000199655 ENSMUSP00000143520 TRANSLATION protein_coding stop - 5 141.0 0.0 0.46534 0.0 52.5 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000027751 Supt20 ENSMUST00000200024 - NO_TRANSLATION retained_intron ENSMUSG00000027751 Supt20 ENSMUST00000198745 - NO_TRANSLATION retained_intron ENSMUSG00000028180 Zranb2 ENSMUST00000106058 ENSMUSP00000101673 TRANSLATION protein_coding - CCDS51100.1 1 330.0 8.0 2.25 0.4 59.9 0.0 -4,-5 0.3374 11 14.0 ALTERNATIVE:2 ENSMUSG00000028180 Zranb2 ENSMUST00000198915 ENSMUSP00000143533 TRANSLATION nonsense_mediated_decay - - 5 38.0 4.0 1.0 0.0 33.7 0.0 -4,-5 0.0012 2 -2.0 MINOR ENSMUSG00000028180 Zranb2 ENSMUST00000184802 ENSMUSP00000138986 TRANSLATION nonsense_mediated_decay - - 1 40.0 4.0 1.0 0.0 33.7 0.0 -4,-5 0.0012 2 -2.0 MINOR ENSMUSG00000028180 Zranb2 ENSMUST00000106057 ENSMUSP00000101672 TRANSLATION protein_coding - - 5 320.0 8.0 2.25 3.0 59.9 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:2 ENSMUSG00000028180 Zranb2 ENSMUST00000106063 ENSMUSP00000101678 TRANSLATION protein_coding start - 5 208.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 4 -2.0 MINOR ENSMUSG00000028180 Zranb2 ENSMUST00000029831 ENSMUSP00000029831 TRANSLATION protein_coding - - 5 293.0 7.0 1.75 0.0 33.7 0.0 -4,-5 0.0033 9 10.718 MINOR ENSMUSG00000028180 Zranb2 ENSMUST00000152882 - NO_TRANSLATION retained_intron ENSMUSG00000028180 Zranb2 ENSMUST00000196900 - NO_TRANSLATION retained_intron ENSMUSG00000053769 Lysmd1 ENSMUST00000066386 ENSMUSP00000067811 TRANSLATION protein_coding - CCDS17602.1 1 226.0 0.0 1.3 12.5 34.0 0.0 -3,1 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000042404 Dennd4b ENSMUST00000138376 ENSMUSP00000116003 TRANSLATION protein_coding start/stop - 3 264.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0007 4 -2.0 MINOR ENSMUSG00000042404 Dennd4b ENSMUST00000129564 ENSMUSP00000117354 TRANSLATION protein_coding - - 5 1499.0 0.0 2.50375 6.9 303.3 0.0 -4,-5 0.776 22 9.736 ALTERNATIVE:1 ENSMUSG00000042404 Dennd4b ENSMUST00000098914 ENSMUSP00000096514 TRANSLATION protein_coding - CCDS38502.2 1 1510.0 0.0 2.50375 7.8 303.3 0.0 -4,-5 1.0 22 10.0 PRINCIPAL:4 ENSMUSG00000042404 Dennd4b ENSMUST00000141139 - NO_TRANSLATION retained_intron ENSMUSG00000042404 Dennd4b ENSMUST00000151648 ENSMUSP00000121350 TRANSLATION nonsense_mediated_decay start - 5 158.0 0.0 0.32175 0.0 90.3 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000042404 Dennd4b ENSMUST00000156358 ENSMUSP00000118483 TRANSLATION nonsense_mediated_decay start - 5 207.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000042404 Dennd4b ENSMUST00000143803 - NO_TRANSLATION retained_intron ENSMUSG00000027871 Hsd3b1 ENSMUST00000107016 ENSMUSP00000102630 TRANSLATION protein_coding - CCDS17670.1 1 373.0 29.0 3.0 15.0 399.6 1.0 -4,-6 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000027871 Hsd3b1 ENSMUST00000029465 ENSMUSP00000029465 TRANSLATION protein_coding - CCDS17670.1 2 373.0 29.0 3.0 15.0 399.6 1.0 -4,-6 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000062908 Acadm ENSMUST00000150070 ENSMUSP00000121714 TRANSLATION protein_coding stop - 5 144.0 5.0 3.53 0.0 65.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000062908 Acadm ENSMUST00000137161 - NO_TRANSLATION retained_intron ENSMUSG00000062908 Acadm ENSMUST00000156310 ENSMUSP00000122989 TRANSLATION nonsense_mediated_decay - - 3 157.0 0.0 1.15 0.0 0.0 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000062908 Acadm ENSMUST00000199342 - NO_TRANSLATION retained_intron ENSMUSG00000062908 Acadm ENSMUST00000135724 - NO_TRANSLATION retained_intron ENSMUSG00000062908 Acadm ENSMUST00000196688 - NO_TRANSLATION retained_intron ENSMUSG00000062908 Acadm ENSMUST00000130713 - NO_TRANSLATION retained_intron ENSMUSG00000062908 Acadm ENSMUST00000196188 - NO_TRANSLATION retained_intron ENSMUSG00000062908 Acadm ENSMUST00000072697 ENSMUSP00000072483 TRANSLATION protein_coding - CCDS17924.1 1 421.0 30.0 9.98 11.9 352.4 0.0 -4,0 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000062908 Acadm ENSMUST00000200250 - NO_TRANSLATION retained_intron ENSMUSG00000052468 Pmp2 ENSMUST00000029034 ENSMUSP00000029034 TRANSLATION protein_coding - CCDS17236.1 1 132.0 19.0 3.25 34.7 81.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000040264 Gbp2b ENSMUST00000029936 ENSMUSP00000029936 TRANSLATION protein_coding - CCDS38658.1 1 589.0 15.0 9.8 9.2 802.5 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000039146 Ifi44l ENSMUST00000046739 ENSMUSP00000044765 TRANSLATION protein_coding start - 1 157.0 0.0 1.7 0.0 0.0 0.0 -4,-6 0.6627 - -2.0 PRINCIPAL:1 ENSMUSG00000037072 Selenof ENSMUST00000082437 ENSMUSP00000046910 TRANSLATION protein_coding - CCDS17884.1 1 162.0 0.0 3.25 14.5 98.5 0.0 2,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000037072 Selenof ENSMUST00000144859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037072 Selenof ENSMUST00000198279 - NO_TRANSLATION retained_intron ENSMUSG00000037072 Selenof ENSMUST00000151086 ENSMUSP00000142750 TRANSLATION protein_coding start - 2 45.0 0.0 0.93 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000037072 Selenof ENSMUST00000198936 - NO_TRANSLATION retained_intron ENSMUSG00000037072 Selenof ENSMUST00000106211 ENSMUSP00000101817 TRANSLATION protein_coding - - 3 121.0 0.0 1.5 2.7 0.0 0.0 2,-2 0.0481 2 3.006 MINOR ENSMUSG00000028149 Rap1gds1 ENSMUST00000195953 - NO_TRANSLATION retained_intron ENSMUSG00000028149 Rap1gds1 ENSMUST00000199152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028149 Rap1gds1 ENSMUST00000200262 - NO_TRANSLATION retained_intron ENSMUSG00000028149 Rap1gds1 ENSMUST00000200396 ENSMUSP00000143517 TRANSLATION protein_coding - - 1 544.0 0.0 11.93 0.0 112.0 0.0 -4,-5 0.0098 19 7.974 MINOR ENSMUSG00000028149 Rap1gds1 ENSMUST00000198538 - NO_TRANSLATION retained_intron ENSMUSG00000028149 Rap1gds1 ENSMUST00000098574 ENSMUSP00000096173 TRANSLATION protein_coding - CCDS51083.1 1 607.0 0.0 13.93 0.0 112.4 0.0 -4,-5 0.4712 23 12.0 MINOR ENSMUSG00000028149 Rap1gds1 ENSMUST00000196106 ENSMUSP00000143046 TRANSLATION nonsense_mediated_decay - - 2 101.0 0.0 1.6 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028149 Rap1gds1 ENSMUST00000029796 ENSMUSP00000029796 TRANSLATION protein_coding - CCDS51082.1 1 558.0 0.0 12.93 30.3 112.0 0.0 -4,-5 0.9254 22 13.606 MINOR ENSMUSG00000028149 Rap1gds1 ENSMUST00000196280 ENSMUSP00000143181 TRANSLATION protein_coding - CCDS80033.1 1 606.0 0.0 13.93 33.3 112.4 0.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000053965 Pde5a ENSMUST00000066728 ENSMUSP00000069011 TRANSLATION protein_coding - CCDS17812.1 1 865.0 15.0 16.755 7.2 360.9 0.0 -4,-6 0.864 28 19.908 MINOR ENSMUSG00000053965 Pde5a ENSMUST00000198314 - NO_TRANSLATION retained_intron ENSMUSG00000053965 Pde5a ENSMUST00000200389 ENSMUSP00000143042 TRANSLATION protein_coding - - 5 833.0 15.0 16.755 14.0 360.9 0.0 -4,-5 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000053965 Pde5a ENSMUST00000199253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068888 Lce1i ENSMUST00000090866 ENSMUSP00000088379 TRANSLATION protein_coding - CCDS38516.1 1 149.0 0.0 0.0 0.0 29.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000039174 1700003H04Rik ENSMUST00000180033 ENSMUSP00000136217 TRANSLATION nonsense_mediated_decay - - 1 123.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0194 - -2.0 MINOR ENSMUSG00000039174 1700003H04Rik ENSMUST00000177772 ENSMUSP00000136525 TRANSLATION protein_coding start - 5 57.0 0.0 0.0 0.0 0.0 0.0 -2,-6 0.0234 - -2.0 MINOR ENSMUSG00000039174 1700003H04Rik ENSMUST00000178953 ENSMUSP00000136955 TRANSLATION nonsense_mediated_decay - - 1 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.037 - -2.0 MINOR ENSMUSG00000039174 1700003H04Rik ENSMUST00000180162 ENSMUSP00000137342 TRANSLATION protein_coding - - 5 160.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0167 - 0.0 ALTERNATIVE:2 ENSMUSG00000039174 1700003H04Rik ENSMUST00000178485 ENSMUSP00000136984 TRANSLATION protein_coding - - 1 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5655 - 0.0 PRINCIPAL:2 ENSMUSG00000054690 Emcn ENSMUST00000128985 - NO_TRANSLATION retained_intron ENSMUSG00000054690 Emcn ENSMUST00000122064 ENSMUSP00000112603 TRANSLATION protein_coding - CCDS51075.1 1 261.0 0.0 1.0 2.3 363.6 2.0 2,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000054690 Emcn ENSMUST00000197511 ENSMUSP00000142467 TRANSLATION protein_coding stop - 5 219.0 0.0 1.0 0.0 233.7 2.0 2,-2 0.0503 - -2.0 MINOR ENSMUSG00000054690 Emcn ENSMUST00000119475 ENSMUSP00000114102 TRANSLATION protein_coding - CCDS17861.1 1 248.0 0.0 1.0 2.3 327.4 2.0 2,-2 0.538 - 10.828 MINOR ENSMUSG00000060913 Trim55 ENSMUST00000195744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060913 Trim55 ENSMUST00000029139 ENSMUSP00000029139 TRANSLATION protein_coding - CCDS38399.1 2 545.0 15.0 2.7196 8.8 67.0 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000005774 Rfx5 ENSMUST00000147237 ENSMUSP00000118586 TRANSLATION protein_coding stop - 5 181.0 0.0 3.428 0.0 101.7 0.0 -4,-5 0.042 4 -2.0 MINOR ENSMUSG00000005774 Rfx5 ENSMUST00000107254 ENSMUSP00000102875 TRANSLATION protein_coding - - 1 303.0 0.0 3.428 0.0 101.7 0.0 -4,-5 0.045 6 6.0 MINOR ENSMUSG00000005774 Rfx5 ENSMUST00000137088 ENSMUSP00000117963 TRANSLATION protein_coding - CCDS17598.1 5 658.0 0.0 3.428 0.0 442.0 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000005774 Rfx5 ENSMUST00000107260 ENSMUSP00000102881 TRANSLATION protein_coding - CCDS17598.1 5 658.0 0.0 3.428 0.0 442.0 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000005774 Rfx5 ENSMUST00000145472 ENSMUSP00000116675 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005774 Rfx5 ENSMUST00000107253 ENSMUSP00000102874 TRANSLATION protein_coding - - 1 303.0 0.0 3.428 0.0 101.7 0.0 -4,-5 0.045 6 6.0 MINOR ENSMUSG00000005774 Rfx5 ENSMUST00000145031 ENSMUSP00000118099 TRANSLATION protein_coding stop - 5 105.0 0.0 2.18 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005774 Rfx5 ENSMUST00000107255 ENSMUSP00000102876 TRANSLATION protein_coding - CCDS17598.1 5 658.0 0.0 3.428 0.0 442.0 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000005774 Rfx5 ENSMUST00000144132 ENSMUSP00000114908 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005774 Rfx5 ENSMUST00000140294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005774 Rfx5 ENSMUST00000029772 ENSMUSP00000029772 TRANSLATION protein_coding - CCDS17598.1 1 658.0 0.0 3.428 0.0 442.0 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000005774 Rfx5 ENSMUST00000152869 ENSMUSP00000121157 TRANSLATION protein_coding stop - 5 90.0 0.0 2.18 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005774 Rfx5 ENSMUST00000148803 - NO_TRANSLATION retained_intron ENSMUSG00000005774 Rfx5 ENSMUST00000142708 - NO_TRANSLATION retained_intron ENSMUSG00000005774 Rfx5 ENSMUST00000132393 ENSMUSP00000117999 TRANSLATION protein_coding stop - 5 95.0 0.0 2.18 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005774 Rfx5 ENSMUST00000142311 ENSMUSP00000119704 TRANSLATION protein_coding stop - 3 131.0 0.0 2.378 0.0 30.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005774 Rfx5 ENSMUST00000140331 ENSMUSP00000118014 TRANSLATION nonsense_mediated_decay - - 3 41.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062006 Rpl34 ENSMUST00000200517 ENSMUSP00000143752 TRANSLATION protein_coding stop - 2 59.0 2.0 1.75 0.0 80.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000062006 Rpl34 ENSMUST00000079085 ENSMUSP00000078092 TRANSLATION protein_coding - CCDS17841.1 1 117.0 4.0 3.5 36.9 145.0 0.0 -4,-1 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000062006 Rpl34 ENSMUST00000199911 - NO_TRANSLATION retained_intron ENSMUSG00000062006 Rpl34 ENSMUST00000199001 - NO_TRANSLATION retained_intron ENSMUSG00000062006 Rpl34 ENSMUST00000062601 ENSMUSP00000086614 TRANSLATION protein_coding - CCDS17841.1 1 117.0 4.0 3.5 36.9 145.0 0.0 -4,-1 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000062006 Rpl34 ENSMUST00000135691 - NO_TRANSLATION retained_intron ENSMUSG00000062006 Rpl34 ENSMUST00000196202 ENSMUSP00000142486 TRANSLATION protein_coding stop - 2 117.0 4.0 3.5 36.9 145.0 0.0 -4,-1 0.8666 5 -2.0 MINOR ENSMUSG00000062006 Rpl34 ENSMUST00000133802 ENSMUSP00000142951 TRANSLATION protein_coding - - 2 90.0 4.0 2.75 0.0 133.4 0.0 -4,-1 0.0019 3 13.804 MINOR ENSMUSG00000028020 Glrb ENSMUST00000193031 - NO_TRANSLATION retained_intron ENSMUSG00000028020 Glrb ENSMUST00000194085 ENSMUSP00000142306 TRANSLATION protein_coding - - 1 445.0 0.0 4.13 4.0 244.0 3.0 4,-1 0.0737 8 6.93 MINOR ENSMUSG00000028020 Glrb ENSMUST00000132330 ENSMUSP00000115014 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000028020 Glrb ENSMUST00000029654 ENSMUSP00000029654 TRANSLATION protein_coding - CCDS17424.1 1 496.0 0.0 5.13 24.2 303.8 4.0 4,-1 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000028020 Glrb ENSMUST00000107743 ENSMUSP00000103372 TRANSLATION protein_coding - - 5 307.0 0.0 4.53 1.0 211.8 1.0 4,-1 0.0079 5 5.28 MINOR ENSMUSG00000028020 Glrb ENSMUST00000135043 ENSMUSP00000116604 TRANSLATION nonsense_mediated_decay - - 1 58.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000068885 Lce3f ENSMUST00000090863 ENSMUSP00000088375 TRANSLATION protein_coding - CCDS38522.1 1 98.0 0.0 0.0 0.3 103.9 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000040289 Hey1 ENSMUST00000042412 ENSMUSP00000038014 TRANSLATION protein_coding - CCDS17232.1 1 299.0 0.0 2.55 14.1 104.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040289 Hey1 ENSMUST00000192102 - NO_TRANSLATION retained_intron ENSMUSG00000040289 Hey1 ENSMUST00000194299 - NO_TRANSLATION retained_intron ENSMUSG00000040289 Hey1 ENSMUST00000192550 - NO_TRANSLATION retained_intron ENSMUSG00000027937 Jtb ENSMUST00000029546 ENSMUSP00000029546 TRANSLATION protein_coding - CCDS17523.1 1 146.0 0.0 2.5 10.3 127.6 0.0 3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000027937 Jtb ENSMUST00000119304 ENSMUSP00000113763 TRANSLATION protein_coding - - 3 95.0 0.0 1.5 0.0 59.0 0.0 3,-1 0.0006 1 5.484 MINOR ENSMUSG00000027937 Jtb ENSMUST00000123839 - NO_TRANSLATION retained_intron ENSMUSG00000027937 Jtb ENSMUST00000157045 - NO_TRANSLATION retained_intron ENSMUSG00000028268 Gbp3 ENSMUST00000199325 ENSMUSP00000142411 TRANSLATION protein_coding stop - 3 57.0 7.0 1.0 0.0 61.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028268 Gbp3 ENSMUST00000029935 ENSMUSP00000029935 TRANSLATION protein_coding - CCDS17879.1 1 620.0 16.0 9.65 0.1 817.9 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000028268 Gbp3 ENSMUST00000142731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028268 Gbp3 ENSMUST00000142060 ENSMUSP00000120131 TRANSLATION protein_coding stop - 3 135.0 12.0 3.25 0.0 220.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028268 Gbp3 ENSMUST00000128609 ENSMUSP00000117991 TRANSLATION protein_coding stop - 5 83.0 11.0 1.75 0.0 118.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028268 Gbp3 ENSMUST00000106221 ENSMUSP00000101828 TRANSLATION protein_coding - CCDS17879.1 1 620.0 16.0 9.65 0.1 817.9 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000028268 Gbp3 ENSMUST00000106222 ENSMUSP00000101829 TRANSLATION protein_coding - CCDS17879.1 1 620.0 16.0 9.65 0.1 817.9 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000038642 Ctss ENSMUST00000116304 ENSMUSP00000112006 TRANSLATION protein_coding - CCDS50992.1 1 340.0 4.0 6.8 4.7 319.3 0.0 1,-3 0.9364 8 13.396 ALTERNATIVE:1 ENSMUSG00000038642 Ctss ENSMUST00000015667 ENSMUSP00000015667 TRANSLATION protein_coding - CCDS71291.1 1 341.0 4.0 6.8 6.3 319.3 0.0 1,-5 1.0 8 14.0 PRINCIPAL:4 ENSMUSG00000027823 Gmps ENSMUST00000029405 ENSMUSP00000029405 TRANSLATION protein_coding - CCDS17383.1 1 693.0 19.0 14.2 18.2 204.1 0.0 -4,-5 1.0 30 22.0 PRINCIPAL:1 ENSMUSG00000005779 Psmb4 ENSMUST00000200513 - NO_TRANSLATION retained_intron ENSMUSG00000005779 Psmb4 ENSMUST00000136143 - NO_TRANSLATION retained_intron ENSMUSG00000005779 Psmb4 ENSMUST00000133412 - NO_TRANSLATION retained_intron ENSMUSG00000005779 Psmb4 ENSMUST00000005923 ENSMUSP00000005923 TRANSLATION protein_coding - CCDS17597.1 1 264.0 0.0 4.75 11.8 116.7 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000005779 Psmb4 ENSMUST00000134133 - NO_TRANSLATION retained_intron ENSMUSG00000034317 Trim59 ENSMUST00000136512 ENSMUSP00000120270 TRANSLATION protein_coding stop - 1 389.0 16.0 0.132 0.0 76.3 1.0 -4,-5 0.0691 3 -2.0 MINOR ENSMUSG00000034317 Trim59 ENSMUST00000107802 ENSMUSP00000103432 TRANSLATION protein_coding - CCDS17402.1 1 403.0 16.0 0.132 9.1 76.3 1.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000034317 Trim59 ENSMUST00000142560 - NO_TRANSLATION retained_intron ENSMUSG00000034317 Trim59 ENSMUST00000153259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040253 Gbp7 ENSMUST00000171263 ENSMUSP00000132970 TRANSLATION protein_coding - CCDS38657.1 1 638.0 16.0 9.2 1.0 829.8 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000040253 Gbp7 ENSMUST00000045097 ENSMUSP00000049104 TRANSLATION protein_coding - CCDS38657.1 1 638.0 16.0 9.2 1.0 829.8 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000008601 Rab25 ENSMUST00000131775 ENSMUSP00000120505 TRANSLATION protein_coding stop - 3 138.0 11.0 3.25 0.0 131.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000008601 Rab25 ENSMUST00000149724 - NO_TRANSLATION retained_intron ENSMUSG00000008601 Rab25 ENSMUST00000008745 ENSMUSP00000008745 TRANSLATION protein_coding - CCDS17477.1 1 213.0 24.0 4.75 34.7 189.2 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000008601 Rab25 ENSMUST00000141371 - NO_TRANSLATION retained_intron ENSMUSG00000025757 Hspa4l ENSMUST00000204174 - NO_TRANSLATION retained_intron ENSMUSG00000025757 Hspa4l ENSMUST00000203496 ENSMUSP00000145243 TRANSLATION protein_coding stop - 2 158.0 6.0 4.25 0.0 125.9 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000025757 Hspa4l ENSMUST00000203353 ENSMUSP00000144787 TRANSLATION protein_coding stop - 5 571.0 21.0 10.5 0.0 601.6 0.0 -4,-7 0.007 27 -2.0 MINOR ENSMUSG00000025757 Hspa4l ENSMUST00000203425 - NO_TRANSLATION retained_intron ENSMUSG00000025757 Hspa4l ENSMUST00000203267 - NO_TRANSLATION retained_intron ENSMUSG00000025757 Hspa4l ENSMUST00000204702 ENSMUSP00000145468 TRANSLATION protein_coding - CCDS17327.1 1 838.0 21.0 13.7 15.3 632.0 0.0 -4,-7 1.0 39 22.0 PRINCIPAL:1 ENSMUSG00000025757 Hspa4l ENSMUST00000108086 ENSMUSP00000103721 TRANSLATION protein_coding - - 1 817.0 17.0 12.7 0.0 572.9 0.0 -4,-7 0.0365 37 9.792 MINOR ENSMUSG00000034139 Serpini2 ENSMUST00000039047 ENSMUSP00000046943 TRANSLATION protein_coding - CCDS17413.1 1 405.0 0.0 5.3 7.1 378.9 0.0 2,-2 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000027533 Fabp5 ENSMUST00000029046 ENSMUSP00000029046 TRANSLATION protein_coding - CCDS38388.1 1 135.0 19.0 3.25 15.3 66.5 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000027533 Fabp5 ENSMUST00000123744 - NO_TRANSLATION retained_intron ENSMUSG00000063779 Chil4 ENSMUST00000082219 ENSMUSP00000080851 TRANSLATION protein_coding - CCDS17719.1 1 402.0 2.0 7.83 0.1 273.4 0.0 3,-2 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000063779 Chil4 ENSMUST00000196128 - NO_TRANSLATION retained_intron ENSMUSG00000028165 Cisd2 ENSMUST00000198784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028165 Cisd2 ENSMUST00000029815 ENSMUSP00000029815 TRANSLATION protein_coding - CCDS17856.1 1 135.0 11.0 2.75 32.9 135.7 1.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000028165 Cisd2 ENSMUST00000120988 ENSMUSP00000113842 TRANSLATION protein_coding - - 1 108.0 4.0 2.0 0.0 97.5 1.0 -4,-7 0.0043 2 9.402 MINOR ENSMUSG00000028165 Cisd2 ENSMUST00000196942 - NO_TRANSLATION retained_intron ENSMUSG00000037994 Slc9b2 ENSMUST00000132405 - NO_TRANSLATION retained_intron ENSMUSG00000037994 Slc9b2 ENSMUST00000149655 ENSMUSP00000142939 TRANSLATION protein_coding stop - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037994 Slc9b2 ENSMUST00000126034 - NO_TRANSLATION retained_intron ENSMUSG00000037994 Slc9b2 ENSMUST00000051849 ENSMUSP00000060640 TRANSLATION protein_coding - CCDS17854.1 1 547.0 0.0 9.5 0.4 103.1 12.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000037994 Slc9b2 ENSMUST00000145195 ENSMUSP00000123083 TRANSLATION nonsense_mediated_decay - - 1 143.0 0.0 2.0 0.0 0.0 3.0 0,-3 0.0059 - -2.0 MINOR ENSMUSG00000037211 Spry1 ENSMUST00000108109 ENSMUSP00000103744 TRANSLATION protein_coding - CCDS17322.1 1 313.0 0.0 0.4 24.1 106.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000037211 Spry1 ENSMUST00000108107 ENSMUSP00000103742 TRANSLATION protein_coding - CCDS17322.1 1 313.0 0.0 0.4 24.1 106.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000037211 Spry1 ENSMUST00000038569 ENSMUSP00000049292 TRANSLATION protein_coding - CCDS17322.1 1 313.0 0.0 0.4 24.1 106.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025764 Jade1 ENSMUST00000195846 ENSMUSP00000141711 TRANSLATION protein_coding stop - 5 152.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025764 Jade1 ENSMUST00000170711 ENSMUSP00000127113 TRANSLATION protein_coding - CCDS17331.1 5 834.0 16.0 2.3 0.4 190.1 0.0 -4,-5 0.3577 5 17.928 MINOR ENSMUSG00000025764 Jade1 ENSMUST00000195200 - NO_TRANSLATION retained_intron ENSMUSG00000025764 Jade1 ENSMUST00000163764 ENSMUSP00000128152 TRANSLATION protein_coding - CCDS17331.1 1 834.0 16.0 2.3 0.4 190.1 0.0 -4,-5 0.3577 5 17.928 MINOR ENSMUSG00000025764 Jade1 ENSMUST00000192451 ENSMUSP00000142142 TRANSLATION protein_coding start/stop - 3 164.0 12.0 0.5 0.0 37.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025764 Jade1 ENSMUST00000026865 ENSMUSP00000026865 TRANSLATION protein_coding - CCDS17331.1 1 834.0 16.0 2.3 0.4 190.1 0.0 -4,-5 0.3577 5 17.928 MINOR ENSMUSG00000025764 Jade1 ENSMUST00000168086 ENSMUSP00000131441 TRANSLATION protein_coding - CCDS17331.1 1 834.0 16.0 2.3 0.4 190.1 0.0 -4,-5 0.3577 5 17.928 MINOR ENSMUSG00000025764 Jade1 ENSMUST00000191921 - NO_TRANSLATION retained_intron ENSMUSG00000025764 Jade1 ENSMUST00000192300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025764 Jade1 ENSMUST00000193080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025764 Jade1 ENSMUST00000194181 ENSMUSP00000141670 TRANSLATION protein_coding stop - 5 104.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025764 Jade1 ENSMUST00000194348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025764 Jade1 ENSMUST00000191952 ENSMUSP00000141499 TRANSLATION protein_coding - - 5 510.0 16.0 2.3 4.2 191.3 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000025764 Jade1 ENSMUST00000195322 - NO_TRANSLATION retained_intron ENSMUSG00000042092 Lce1c ENSMUST00000047055 ENSMUSP00000045573 TRANSLATION protein_coding - CCDS38514.1 1 147.0 0.0 0.0 0.0 31.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027961 Lrrc39 ENSMUST00000029573 ENSMUSP00000029573 TRANSLATION protein_coding - CCDS17788.1 1 337.0 0.0 4.22 13.3 104.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000027961 Lrrc39 ENSMUST00000203327 - NO_TRANSLATION retained_intron ENSMUSG00000005625 Psmd4 ENSMUST00000117355 ENSMUSP00000113554 TRANSLATION protein_coding - - 1 368.0 0.0 7.66 0.0 120.0 0.0 -4,-5 0.0601 8 10.002 MINOR ENSMUSG00000005625 Psmd4 ENSMUST00000140348 ENSMUSP00000114545 TRANSLATION protein_coding start - 5 194.0 0.0 4.83 0.0 22.3 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000005625 Psmd4 ENSMUST00000136868 - NO_TRANSLATION retained_intron ENSMUSG00000005625 Psmd4 ENSMUST00000147960 - NO_TRANSLATION retained_intron ENSMUSG00000005625 Psmd4 ENSMUST00000140280 - NO_TRANSLATION retained_intron ENSMUSG00000005625 Psmd4 ENSMUST00000071664 ENSMUSP00000071589 TRANSLATION protein_coding - CCDS71287.1 1 379.0 0.0 8.66 3.0 120.0 0.0 -4,-5 0.4931 9 12.75 MINOR ENSMUSG00000005625 Psmd4 ENSMUST00000143688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005625 Psmd4 ENSMUST00000107237 ENSMUSP00000102857 TRANSLATION protein_coding - CCDS38541.1 1 376.0 0.0 8.66 9.0 120.0 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000047824 Pygo2 ENSMUST00000136573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047824 Pygo2 ENSMUST00000125830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047824 Pygo2 ENSMUST00000107413 ENSMUSP00000103036 TRANSLATION protein_coding - CCDS38494.1 1 368.0 8.0 0.2 4.0 30.5 0.0 -4,-7 0.6067 4 19.233 MINOR ENSMUSG00000047824 Pygo2 ENSMUST00000146037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047824 Pygo2 ENSMUST00000060061 ENSMUSP00000053672 TRANSLATION protein_coding - CCDS79952.1 1 405.0 8.0 0.2 8.3 30.5 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000047824 Pygo2 ENSMUST00000133680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027719 Adad1 ENSMUST00000029274 ENSMUSP00000029274 TRANSLATION protein_coding - - 5 548.0 16.0 2.263 0.0 314.7 0.0 -4,-6 0.0049 - 15.582 MINOR ENSMUSG00000027719 Adad1 ENSMUST00000148157 - NO_TRANSLATION retained_intron ENSMUSG00000027719 Adad1 ENSMUST00000144629 ENSMUSP00000115260 TRANSLATION protein_coding - CCDS17315.1 1 619.0 16.0 2.428 0.4 348.2 0.0 -2,0 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000027719 Adad1 ENSMUST00000147773 ENSMUSP00000121015 TRANSLATION protein_coding start - 3 201.0 9.0 1.713 0.0 164.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000027719 Adad1 ENSMUST00000141736 - NO_TRANSLATION retained_intron ENSMUSG00000033439 Trmt13 ENSMUST00000184963 ENSMUSP00000138868 TRANSLATION nonsense_mediated_decay - - 1 292.0 22.0 0.0 0.0 228.9 0.0 -4,-5 0.0004 1 -2.0 MINOR ENSMUSG00000033439 Trmt13 ENSMUST00000134761 ENSMUSP00000138761 TRANSLATION nonsense_mediated_decay start - 5 64.0 5.0 0.0 0.0 40.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033439 Trmt13 ENSMUST00000041524 ENSMUSP00000047320 TRANSLATION protein_coding - CCDS38612.1 1 481.0 22.0 0.0 6.4 407.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000033439 Trmt13 ENSMUST00000124807 - NO_TRANSLATION retained_intron ENSMUSG00000033439 Trmt13 ENSMUST00000197190 ENSMUSP00000143637 TRANSLATION protein_coding start/stop - 5 179.0 14.0 0.0 0.0 67.5 0.0 -4,-7 0.0004 - -2.0 MINOR ENSMUSG00000033439 Trmt13 ENSMUST00000156161 - NO_TRANSLATION retained_intron ENSMUSG00000033439 Trmt13 ENSMUST00000198454 ENSMUSP00000142410 TRANSLATION protein_coding - - - 145.0 3.0 0.0 0.0 53.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000033439 Trmt13 ENSMUST00000198103 - NO_TRANSLATION retained_intron ENSMUSG00000033439 Trmt13 ENSMUST00000183638 ENSMUSP00000139223 TRANSLATION nonsense_mediated_decay - - 5 176.0 7.0 0.0 1.1 93.7 0.0 -4,-5 0.02 1 -2.0 MINOR ENSMUSG00000033439 Trmt13 ENSMUST00000126546 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033439 Trmt13 ENSMUST00000199439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004233 Wars2 ENSMUST00000145650 ENSMUSP00000142723 TRANSLATION nonsense_mediated_decay - - 1 188.0 21.0 2.5 0.0 136.2 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000004233 Wars2 ENSMUST00000004343 ENSMUSP00000004343 TRANSLATION protein_coding - CCDS17672.1 1 360.0 32.0 5.25 11.6 232.0 0.0 -4,0 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000004233 Wars2 ENSMUST00000135960 ENSMUSP00000142470 TRANSLATION nonsense_mediated_decay - - 1 175.0 22.0 2.5 0.0 136.6 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000004233 Wars2 ENSMUST00000198044 ENSMUSP00000142361 TRANSLATION protein_coding - - 3 106.0 8.0 1.5 0.0 42.3 0.0 -4,-1 0.0 - 0.0 MINOR ENSMUSG00000004233 Wars2 ENSMUST00000126875 - NO_TRANSLATION retained_intron ENSMUSG00000036885 Arhgef26 ENSMUST00000161493 - NO_TRANSLATION retained_intron ENSMUSG00000036885 Arhgef26 ENSMUST00000163008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036885 Arhgef26 ENSMUST00000161057 ENSMUSP00000124392 TRANSLATION protein_coding start/stop - 5 257.0 0.0 4.665 0.0 89.7 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000036885 Arhgef26 ENSMUST00000159746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036885 Arhgef26 ENSMUST00000192138 - NO_TRANSLATION retained_intron ENSMUSG00000036885 Arhgef26 ENSMUST00000079300 ENSMUSP00000078281 TRANSLATION protein_coding - CCDS38443.1 1 869.0 0.0 8.965 2.5 194.5 0.0 -4,-6 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000027737 Slc7a11 ENSMUST00000029297 ENSMUSP00000029297 TRANSLATION protein_coding - CCDS17335.1 1 502.0 0.0 11.05 23.7 109.3 8.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027737 Slc7a11 ENSMUST00000142932 - NO_TRANSLATION retained_intron ENSMUSG00000027737 Slc7a11 ENSMUST00000194462 ENSMUSP00000141988 TRANSLATION protein_coding - - 1 490.0 0.0 10.63 1.1 109.3 8.0 -4,-6 0.1872 1 11.176 MINOR ENSMUSG00000027737 Slc7a11 ENSMUST00000193838 - NO_TRANSLATION retained_intron ENSMUSG00000027737 Slc7a11 ENSMUST00000192564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063730 Hsd3b2 ENSMUST00000177651 ENSMUSP00000136533 TRANSLATION protein_coding - CCDS17667.1 5 373.0 31.0 3.0 15.0 372.9 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000063730 Hsd3b2 ENSMUST00000107022 ENSMUSP00000102636 TRANSLATION protein_coding - CCDS17667.1 1 373.0 31.0 3.0 15.0 372.9 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000063730 Hsd3b2 ENSMUST00000107021 ENSMUSP00000102635 TRANSLATION protein_coding - CCDS17667.1 1 373.0 31.0 3.0 15.0 372.9 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000068747 Sort1 ENSMUST00000102632 ENSMUSP00000099692 TRANSLATION protein_coding - CCDS17756.1 1 825.0 0.0 14.95 6.4 502.0 1.0 3,-1 1.0 18 10.0 PRINCIPAL:4 ENSMUSG00000068747 Sort1 ENSMUST00000129755 - NO_TRANSLATION retained_intron ENSMUSG00000068747 Sort1 ENSMUST00000135636 ENSMUSP00000123564 TRANSLATION protein_coding - CCDS80003.1 1 858.0 0.0 14.95 3.8 502.0 1.0 3,-1 0.7833 18 9.038 ALTERNATIVE:2 ENSMUSG00000027746 Ufm1 ENSMUST00000029309 ENSMUSP00000029309 TRANSLATION nonsense_mediated_decay - - 3 57.0 0.0 1.5 0.0 90.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000027746 Ufm1 ENSMUST00000148338 - NO_TRANSLATION retained_intron ENSMUSG00000027746 Ufm1 ENSMUST00000146598 ENSMUSP00000118478 TRANSLATION protein_coding - CCDS38430.1 1 85.0 0.0 2.58 26.4 147.1 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000027746 Ufm1 ENSMUST00000122330 ENSMUSP00000112586 TRANSLATION protein_coding - - 2 82.0 0.0 2.03 0.0 122.0 0.0 -4,-7 0.0093 3 9.216 MINOR ENSMUSG00000027746 Ufm1 ENSMUST00000152414 - NO_TRANSLATION retained_intron ENSMUSG00000063767 S100a7a ENSMUST00000212471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063767 S100a7a ENSMUST00000079286 ENSMUSP00000078268 TRANSLATION protein_coding - CCDS17541.1 1 108.0 14.0 2.0 8.2 71.6 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000038170 Pde4dip ENSMUST00000107038 ENSMUSP00000102653 TRANSLATION protein_coding stop - 1 834.0 0.0 1.0 0.0 81.4 0.0 -4,-5 0.0565 14 -2.0 MINOR ENSMUSG00000038170 Pde4dip ENSMUST00000045243 ENSMUSP00000040905 TRANSLATION protein_coding - CCDS38562.1 1 1118.0 6.0 0.0 1.1 0.0 0.0 -4,-7 0.135 21 7.0 MINOR ENSMUSG00000038170 Pde4dip ENSMUST00000175751 ENSMUSP00000134832 TRANSLATION nonsense_mediated_decay - - 1 564.0 6.0 0.0 0.0 0.0 0.0 -4,-7 0.0047 7 -2.0 MINOR ENSMUSG00000038170 Pde4dip ENSMUST00000168438 ENSMUSP00000131170 TRANSLATION protein_coding - CCDS79984.1 1 2412.0 0.0 1.0 0.1 132.8 0.0 -4,-7 1.0 33 8.0 PRINCIPAL:2 ENSMUSG00000038170 Pde4dip ENSMUST00000200232 ENSMUSP00000142941 TRANSLATION protein_coding stop - 2 72.0 0.0 1.0 0.0 79.3 0.0 -4,-6 0.0323 - -2.0 MINOR ENSMUSG00000038170 Pde4dip ENSMUST00000163531 - NO_TRANSLATION retained_intron ENSMUSG00000038170 Pde4dip ENSMUST00000197791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038170 Pde4dip ENSMUST00000090750 ENSMUSP00000088254 TRANSLATION protein_coding - CCDS79985.1 1 2463.0 0.0 1.0 0.1 132.8 0.0 -4,-7 0.6539 34 8.0 ALTERNATIVE:2 ENSMUSG00000038170 Pde4dip ENSMUST00000200063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102422 Iqschfp ENSMUST00000182006 ENSMUSP00000138212 TRANSLATION protein_coding,RT - CCDS79923.1 2 559.0 0.0 3.5 5.2 574.4 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000054312 Mrps21 ENSMUST00000132515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054312 Mrps21 ENSMUST00000142437 ENSMUSP00000117821 TRANSLATION protein_coding stop - 3 44.0 0.0 1.25 0.0 25.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000054312 Mrps21 ENSMUST00000072587 ENSMUSP00000130403 TRANSLATION protein_coding - CCDS38550.1 1 87.0 0.0 2.25 30.7 56.0 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000054312 Mrps21 ENSMUST00000067298 ENSMUSP00000066990 TRANSLATION protein_coding - CCDS38550.1 1 87.0 0.0 2.25 30.7 56.0 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000019232 Etnppl ENSMUST00000172432 - NO_TRANSLATION retained_intron ENSMUSG00000019232 Etnppl ENSMUST00000199940 - NO_TRANSLATION retained_intron ENSMUSG00000019232 Etnppl ENSMUST00000166187 ENSMUSP00000131294 TRANSLATION protein_coding - CCDS38638.1 1 499.0 12.0 11.33 6.7 299.2 0.0 -4,-5 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000019232 Etnppl ENSMUST00000170664 ENSMUSP00000128425 TRANSLATION protein_coding start - 2 122.0 5.0 2.514 0.0 93.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000019232 Etnppl ENSMUST00000163620 ENSMUSP00000129120 TRANSLATION protein_coding - - 5 493.0 12.0 11.0 6.7 272.7 0.0 -4,-5 0.6323 14 17.75 MINOR ENSMUSG00000019232 Etnppl ENSMUST00000072271 ENSMUSP00000072121 TRANSLATION protein_coding - CCDS38638.1 1 499.0 12.0 11.33 6.7 299.2 0.0 -4,-5 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000038766 Gabpb2 ENSMUST00000098873 ENSMUSP00000096470 TRANSLATION protein_coding - CCDS17605.1 5 414.0 0.0 3.0 10.3 86.4 0.0 -4,-5 1.0 6 14.82 PRINCIPAL:1 ENSMUSG00000038766 Gabpb2 ENSMUST00000138862 - NO_TRANSLATION retained_intron ENSMUSG00000038766 Gabpb2 ENSMUST00000141645 - NO_TRANSLATION retained_intron ENSMUSG00000038766 Gabpb2 ENSMUST00000136139 ENSMUSP00000121283 TRANSLATION protein_coding - CCDS17605.1 1 414.0 0.0 3.0 10.3 86.4 0.0 -4,-5 1.0 6 14.82 PRINCIPAL:1 ENSMUSG00000038766 Gabpb2 ENSMUST00000145272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038766 Gabpb2 ENSMUST00000070774 - NO_TRANSLATION retained_intron ENSMUSG00000038766 Gabpb2 ENSMUST00000107209 ENSMUSP00000102827 TRANSLATION protein_coding - CCDS17605.1 1 414.0 0.0 3.0 10.3 86.4 0.0 -4,-5 1.0 6 14.82 PRINCIPAL:1 ENSMUSG00000038766 Gabpb2 ENSMUST00000155555 - NO_TRANSLATION retained_intron ENSMUSG00000038766 Gabpb2 ENSMUST00000107204 ENSMUSP00000102822 TRANSLATION protein_coding - - 1 167.0 0.0 3.0 0.0 89.1 0.0 -4,-5 0.0133 3 12.0 MINOR ENSMUSG00000040969 Arhgef38 ENSMUST00000161022 ENSMUSP00000124280 TRANSLATION protein_coding - CCDS17849.1 1 219.0 0.0 3.0 1.0 71.6 0.0 -4,-5 0.0123 1 0.0 MINOR ENSMUSG00000040969 Arhgef38 ENSMUST00000147041 ENSMUSP00000114238 TRANSLATION protein_coding - - 5 770.0 0.0 6.695 9.2 239.4 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000040969 Arhgef38 ENSMUST00000161932 ENSMUSP00000124776 TRANSLATION protein_coding - - 1 175.0 0.0 2.0 0.0 44.6 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000025255 Zfhx4 ENSMUST00000175866 ENSMUSP00000135827 TRANSLATION protein_coding - - 5 3606.0 50.0 0.6 0.0 267.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000025255 Zfhx4 ENSMUST00000175641 - NO_TRANSLATION retained_intron ENSMUSG00000025255 Zfhx4 ENSMUST00000176383 ENSMUSP00000135289 TRANSLATION protein_coding - CCDS38382.1 5 3581.0 50.0 0.6 0.0 267.8 0.0 -4,-5 0.8762 - 14.0 ALTERNATIVE:2 ENSMUSG00000025255 Zfhx4 ENSMUST00000176175 ENSMUSP00000139253 TRANSLATION protein_coding stop - 5 101.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025255 Zfhx4 ENSMUST00000026284 ENSMUSP00000026284 TRANSLATION protein_coding - CCDS38382.1 5 3581.0 50.0 0.6 0.0 267.8 0.0 -4,-5 0.8762 - 14.0 ALTERNATIVE:2 ENSMUSG00000090733 Rps27 ENSMUST00000195998 ENSMUSP00000142942 TRANSLATION protein_coding - - 5 52.0 4.0 1.33 9.4 92.8 0.0 -3,-6 0.2112 - 13.698 MINOR ENSMUSG00000090733 Rps27 ENSMUST00000170122 ENSMUSP00000132102 TRANSLATION protein_coding - CCDS50970.1 1 84.0 4.0 2.33 34.9 104.8 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000090733 Rps27 ENSMUST00000199428 - NO_TRANSLATION retained_intron ENSMUSG00000090733 Rps27 ENSMUST00000197361 ENSMUSP00000143402 TRANSLATION protein_coding - - 3 83.0 4.0 2.33 2.2 96.0 0.0 -4,-5 0.156 2 15.612 MINOR ENSMUSG00000090733 Rps27 ENSMUST00000199031 - NO_TRANSLATION retained_intron ENSMUSG00000090733 Rps27 ENSMUST00000200305 - NO_TRANSLATION retained_intron ENSMUSG00000090733 Rps27 ENSMUST00000196205 ENSMUSP00000142536 TRANSLATION protein_coding start - 2 82.0 4.0 2.33 34.9 104.8 0.0 -4,-5 0.8322 2 -2.0 MINOR ENSMUSG00000090733 Rps27 ENSMUST00000196196 - NO_TRANSLATION retained_intron ENSMUSG00000090733 Rps27 ENSMUST00000197028 - NO_TRANSLATION retained_intron ENSMUSG00000040724 Kcna2 ENSMUST00000038695 ENSMUSP00000041702 TRANSLATION protein_coding - CCDS17733.1 1 499.0 0.0 1.0 36.9 270.8 3.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000040724 Kcna2 ENSMUST00000196403 ENSMUSP00000142873 TRANSLATION protein_coding - CCDS17733.1 5 499.0 0.0 1.0 36.9 270.8 3.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000040724 Kcna2 ENSMUST00000197470 ENSMUSP00000143798 TRANSLATION protein_coding - CCDS17733.1 5 499.0 0.0 1.0 36.9 270.8 3.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000027940 Tpm3 ENSMUST00000143281 - NO_TRANSLATION retained_intron ENSMUSG00000027940 Tpm3 ENSMUST00000121503 ENSMUSP00000113578 TRANSLATION protein_coding - - 1 284.0 0.0 7.91 36.2 327.4 0.0 -4,-5 0.9287 7 16.0 PRINCIPAL:1 ENSMUSG00000027940 Tpm3 ENSMUST00000136125 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027940 Tpm3 ENSMUST00000133361 - NO_TRANSLATION retained_intron ENSMUSG00000027940 Tpm3 ENSMUST00000131354 - NO_TRANSLATION retained_intron ENSMUSG00000027940 Tpm3 ENSMUST00000119158 ENSMUSP00000113219 TRANSLATION protein_coding - CCDS79961.1 3 247.0 0.0 6.61 29.1 305.4 0.0 -4,-5 0.9805 5 11.274 MINOR ENSMUSG00000027940 Tpm3 ENSMUST00000119570 ENSMUSP00000113978 TRANSLATION protein_coding - CCDS38499.2 1 285.0 0.0 7.83 34.9 294.7 0.0 -4,-5 1.0 3 13.728 MINOR ENSMUSG00000027940 Tpm3 ENSMUST00000029549 ENSMUSP00000029549 TRANSLATION protein_coding - CCDS57223.1 1 248.0 0.0 6.83 27.0 291.8 0.0 -4,-5 0.9043 2 10.66 MINOR ENSMUSG00000027940 Tpm3 ENSMUST00000151798 - NO_TRANSLATION retained_intron ENSMUSG00000027940 Tpm3 ENSMUST00000147430 - NO_TRANSLATION retained_intron ENSMUSG00000027940 Tpm3 ENSMUST00000149734 - NO_TRANSLATION retained_intron ENSMUSG00000027940 Tpm3 ENSMUST00000133281 - NO_TRANSLATION retained_intron ENSMUSG00000027940 Tpm3 ENSMUST00000127955 ENSMUSP00000115565 TRANSLATION protein_coding stop - 3 9.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027940 Tpm3 ENSMUST00000118566 ENSMUSP00000113056 TRANSLATION protein_coding - - 5 248.0 0.0 6.91 32.2 325.2 0.0 -4,-5 0.8394 6 13.414 MINOR ENSMUSG00000027940 Tpm3 ENSMUST00000149432 ENSMUSP00000114229 TRANSLATION protein_coding stop - 3 71.0 0.0 2.16 0.0 99.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027940 Tpm3 ENSMUST00000149115 - NO_TRANSLATION retained_intron ENSMUSG00000062127 Cttnbp2nl ENSMUST00000077548 ENSMUSP00000076751 TRANSLATION protein_coding - CCDS17707.1 1 638.0 0.0 2.0 13.0 229.6 0.0 -4,-6 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000062127 Cttnbp2nl ENSMUST00000098763 ENSMUSP00000096359 TRANSLATION protein_coding - CCDS17707.1 1 638.0 0.0 2.0 13.0 229.6 0.0 -4,-6 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000062127 Cttnbp2nl ENSMUST00000199002 - NO_TRANSLATION retained_intron ENSMUSG00000062127 Cttnbp2nl ENSMUST00000197437 ENSMUSP00000143282 TRANSLATION protein_coding stop - 3 167.0 0.0 2.0 0.0 210.6 0.0 -4,-6 0.0188 5 -2.0 MINOR ENSMUSG00000027912 Lce1m ENSMUST00000193944 ENSMUSP00000141488 TRANSLATION protein_coding stop - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000027912 Lce1m ENSMUST00000029520 ENSMUSP00000029520 TRANSLATION protein_coding - CCDS17579.1 1 182.0 0.0 0.0 0.0 37.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028076 Cd1d1 ENSMUST00000029717 ENSMUSP00000029717 TRANSLATION protein_coding - CCDS17449.1 1 336.0 5.0 4.48 1.1 354.6 1.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000028076 Cd1d1 ENSMUST00000063869 ENSMUSP00000070616 TRANSLATION protein_coding - - 1 205.0 0.0 2.48 0.0 152.5 1.0 3,-2 0.0031 2 1.998 MINOR ENSMUSG00000028076 Cd1d1 ENSMUST00000142793 - NO_TRANSLATION retained_intron ENSMUSG00000028076 Cd1d1 ENSMUST00000107620 - NO_TRANSLATION retained_intron ENSMUSG00000028076 Cd1d1 ENSMUST00000132131 - NO_TRANSLATION retained_intron ENSMUSG00000045031 Cetn4 ENSMUST00000102955 ENSMUSP00000100020 TRANSLATION protein_coding - CCDS17318.1 1 168.0 29.0 3.75 31.5 97.3 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000045031 Cetn4 ENSMUST00000071400 ENSMUSP00000071349 TRANSLATION protein_coding - - 5 125.0 24.0 2.75 0.0 78.3 0.0 -4,-6 0.0003 - 11.496 MINOR ENSMUSG00000045031 Cetn4 ENSMUST00000125252 ENSMUSP00000129410 TRANSLATION protein_coding stop - 2 87.0 12.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045031 Cetn4 ENSMUST00000075537 ENSMUSP00000074975 TRANSLATION protein_coding - - 3 122.0 20.0 2.75 0.0 80.1 0.0 -4,-6 0.0 - 8.94 MINOR ENSMUSG00000045031 Cetn4 ENSMUST00000140956 ENSMUSP00000132689 TRANSLATION protein_coding - - 1 116.0 24.0 2.75 2.0 48.4 0.0 -4,-5 0.0165 - 9.78 MINOR ENSMUSG00000028024 Enpep ENSMUST00000164443 - NO_TRANSLATION retained_intron ENSMUSG00000028024 Enpep ENSMUST00000029658 ENSMUSP00000029658 TRANSLATION protein_coding - CCDS17831.1 1 945.0 13.0 18.75 4.4 575.4 0.0 -4,-7 1.0 27 20.0 PRINCIPAL:1 ENSMUSG00000028024 Enpep ENSMUST00000169240 ENSMUSP00000129759 TRANSLATION nonsense_mediated_decay start - 5 235.0 2.0 5.45 0.0 110.9 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000028024 Enpep ENSMUST00000170918 ENSMUSP00000128872 TRANSLATION nonsense_mediated_decay start - 5 501.0 13.0 9.5 0.0 320.7 0.0 -4,-5 0.0006 15 -2.0 MINOR ENSMUSG00000028024 Enpep ENSMUST00000165217 - NO_TRANSLATION retained_intron ENSMUSG00000005687 Bcas2 ENSMUST00000005830 ENSMUSP00000005830 TRANSLATION protein_coding - CCDS17691.1 1 225.0 0.0 6.0 34.9 273.4 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000005687 Bcas2 ENSMUST00000155520 ENSMUSP00000116250 TRANSLATION nonsense_mediated_decay - - 2 88.0 0.0 1.0 0.0 22.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005687 Bcas2 ENSMUST00000139489 - NO_TRANSLATION retained_intron ENSMUSG00000005687 Bcas2 ENSMUST00000136937 - NO_TRANSLATION retained_intron ENSMUSG00000005687 Bcas2 ENSMUST00000147042 - NO_TRANSLATION retained_intron ENSMUSG00000005687 Bcas2 ENSMUST00000135017 ENSMUSP00000122413 TRANSLATION nonsense_mediated_decay - - 1 78.0 0.0 2.25 0.0 58.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028064 Sema4a ENSMUST00000141471 ENSMUSP00000114330 TRANSLATION protein_coding stop - 5 60.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.002 1 -2.0 MINOR ENSMUSG00000028064 Sema4a ENSMUST00000184972 - NO_TRANSLATION retained_intron ENSMUSG00000028064 Sema4a ENSMUST00000123753 ENSMUSP00000120084 TRANSLATION protein_coding stop - 2 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028064 Sema4a ENSMUST00000166237 ENSMUSP00000125909 TRANSLATION protein_coding - CCDS17475.1 1 760.0 0.0 8.4885 7.9 460.5 1.0 1,-3 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000028064 Sema4a ENSMUST00000127436 ENSMUSP00000118706 TRANSLATION protein_coding stop - 3 233.0 0.0 4.1285 0.0 158.8 0.0 1,-3 0.0008 5 -2.0 MINOR ENSMUSG00000028064 Sema4a ENSMUST00000146921 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028064 Sema4a ENSMUST00000149145 - NO_TRANSLATION retained_intron ENSMUSG00000028064 Sema4a ENSMUST00000185137 ENSMUSP00000138858 TRANSLATION nonsense_mediated_decay start - 3 47.0 0.0 0.8325 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028064 Sema4a ENSMUST00000156108 - NO_TRANSLATION retained_intron ENSMUSG00000028064 Sema4a ENSMUST00000169222 ENSMUSP00000128887 TRANSLATION protein_coding - CCDS17475.1 5 760.0 0.0 8.4885 7.9 460.5 1.0 1,-3 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000028064 Sema4a ENSMUST00000184487 ENSMUSP00000139126 TRANSLATION nonsense_mediated_decay - - 5 170.0 0.0 2.766 0.0 98.5 0.0 1,-3 0.0008 3 -2.0 MINOR ENSMUSG00000028064 Sema4a ENSMUST00000029700 ENSMUSP00000029700 TRANSLATION protein_coding - CCDS17475.1 1 760.0 0.0 8.4885 7.9 460.5 1.0 1,-3 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000028064 Sema4a ENSMUST00000107531 ENSMUSP00000103155 TRANSLATION protein_coding - - 5 628.0 0.0 6.7825 1.0 349.4 1.0 -4,-5 0.016 13 2.586 MINOR ENSMUSG00000028064 Sema4a ENSMUST00000184876 ENSMUSP00000139159 TRANSLATION nonsense_mediated_decay - - 5 180.0 0.0 2.898 0.0 99.2 0.0 1,-3 0.0008 3 -2.0 MINOR ENSMUSG00000028064 Sema4a ENSMUST00000135732 - NO_TRANSLATION retained_intron ENSMUSG00000028064 Sema4a ENSMUST00000135539 - NO_TRANSLATION retained_intron ENSMUSG00000028064 Sema4a ENSMUST00000147200 ENSMUSP00000123061 TRANSLATION protein_coding stop - 5 203.0 0.0 3.7685 0.0 139.8 0.0 1,-3 0.0008 4 -2.0 MINOR ENSMUSG00000028064 Sema4a ENSMUST00000165898 ENSMUSP00000128510 TRANSLATION protein_coding - CCDS17475.1 5 760.0 0.0 8.4885 7.9 460.5 1.0 1,-3 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000028064 Sema4a ENSMUST00000125526 ENSMUSP00000119028 TRANSLATION protein_coding stop - 3 113.0 0.0 1.106 0.0 30.4 0.0 1,-2 0.0008 3 -2.0 MINOR ENSMUSG00000068893 Sprr2a2 ENSMUST00000090871 ENSMUSP00000088386 TRANSLATION protein_coding - CCDS50975.1 1 83.0 0.0 0.0 0.0 34.3 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068893 Sprr2a2 ENSMUST00000071805 ENSMUSP00000102950 TRANSLATION protein_coding - CCDS50975.1 1 83.0 0.0 0.0 0.0 34.3 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000015850 Adamtsl4 ENSMUST00000015994 ENSMUSP00000015994 TRANSLATION protein_coding - CCDS17618.1 1 1036.0 3.0 2.3 0.3 258.6 0.0 1,-4 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000015850 Adamtsl4 ENSMUST00000148854 ENSMUSP00000120844 TRANSLATION protein_coding stop - 3 70.0 0.0 0.0 0.0 0.0 0.0 1,-4 0.0026 - -2.0 MINOR ENSMUSG00000015850 Adamtsl4 ENSMUST00000151054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015850 Adamtsl4 ENSMUST00000117782 ENSMUSP00000113424 TRANSLATION protein_coding - CCDS17618.1 1 1036.0 3.0 2.3 0.3 258.6 0.0 1,-4 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000015850 Adamtsl4 ENSMUST00000124410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046280 She ENSMUST00000050401 ENSMUSP00000059658 TRANSLATION protein_coding - CCDS17518.1 1 492.0 0.0 2.0 0.4 56.3 0.0 -1,2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000046280 She ENSMUST00000197454 - NO_TRANSLATION retained_intron ENSMUSG00000033554 Dph5 ENSMUST00000043342 ENSMUSP00000043730 TRANSLATION protein_coding - CCDS17782.1 1 281.0 13.0 6.91 10.7 0.0 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000033554 Dph5 ENSMUST00000199970 - NO_TRANSLATION retained_intron ENSMUSG00000033554 Dph5 ENSMUST00000106505 ENSMUSP00000102114 TRANSLATION protein_coding - - 1 145.0 8.0 3.41 0.0 0.0 0.0 -4,-5 0.0035 2 2.664 MINOR ENSMUSG00000033554 Dph5 ENSMUST00000197561 - NO_TRANSLATION retained_intron ENSMUSG00000033554 Dph5 ENSMUST00000196804 ENSMUSP00000142654 TRANSLATION protein_coding stop - 2 114.0 8.0 3.08 0.0 0.0 0.0 -4,-5 0.003 2 -2.0 MINOR ENSMUSG00000033554 Dph5 ENSMUST00000189799 ENSMUSP00000140958 TRANSLATION protein_coding - CCDS17782.1 5 281.0 13.0 6.91 10.7 0.0 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000033554 Dph5 ENSMUST00000200258 ENSMUSP00000143049 TRANSLATION protein_coding stop - 3 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.025 - -2.0 MINOR ENSMUSG00000033554 Dph5 ENSMUST00000185098 ENSMUSP00000139249 TRANSLATION nonsense_mediated_decay - - 1 177.0 8.0 4.91 0.0 0.0 0.0 -4,-5 0.0038 2 -2.0 MINOR ENSMUSG00000000563 Atp5pb ENSMUST00000123959 - NO_TRANSLATION retained_intron ENSMUSG00000000563 Atp5pb ENSMUST00000118209 ENSMUSP00000113022 TRANSLATION protein_coding - CCDS17714.1 5 256.0 0.0 4.75 32.9 147.2 0.0 -2,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000000563 Atp5pb ENSMUST00000133320 ENSMUSP00000115496 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 0.0 0.0 0.0 0.0 -2,0 0.0004 - -2.0 MINOR ENSMUSG00000000563 Atp5pb ENSMUST00000143022 - NO_TRANSLATION retained_intron ENSMUSG00000000563 Atp5pb ENSMUST00000199311 ENSMUSP00000143734 TRANSLATION protein_coding start - 5 122.0 0.0 2.75 0.0 77.3 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000000563 Atp5pb ENSMUST00000153666 - NO_TRANSLATION retained_intron ENSMUSG00000033147 Slc22a15 ENSMUST00000182040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033147 Slc22a15 ENSMUST00000183098 - NO_TRANSLATION retained_intron ENSMUSG00000033147 Slc22a15 ENSMUST00000106928 ENSMUSP00000102541 TRANSLATION protein_coding - CCDS51022.1 5 544.0 0.0 6.295 12.2 94.9 15.0 -3,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000033147 Slc22a15 ENSMUST00000183255 ENSMUSP00000138357 TRANSLATION nonsense_mediated_decay - - 1 245.0 0.0 2.15 1.1 43.7 7.0 -3,-6 0.0174 - -2.0 MINOR ENSMUSG00000033147 Slc22a15 ENSMUST00000190824 ENSMUSP00000139518 TRANSLATION protein_coding - - 5 389.0 0.0 3.795 0.0 0.0 8.0 -3,-6 0.0036 3 1.002 MINOR ENSMUSG00000033147 Slc22a15 ENSMUST00000183293 - NO_TRANSLATION retained_intron ENSMUSG00000033147 Slc22a15 ENSMUST00000182130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059832 Kprp ENSMUST00000072363 ENSMUSP00000072200 TRANSLATION protein_coding - CCDS38517.1 1 657.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9125 9 0.0 PRINCIPAL:1 ENSMUSG00000027923 Lce1b ENSMUST00000029531 ENSMUSP00000029531 TRANSLATION protein_coding - CCDS17563.1 1 137.0 0.0 0.0 0.0 39.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027709 Mccc1 ENSMUST00000199092 - NO_TRANSLATION retained_intron ENSMUSG00000027709 Mccc1 ENSMUST00000200552 - NO_TRANSLATION retained_intron ENSMUSG00000027709 Mccc1 ENSMUST00000200162 ENSMUSP00000143396 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0007 - -2.0 MINOR ENSMUSG00000027709 Mccc1 ENSMUST00000197580 - NO_TRANSLATION retained_intron ENSMUSG00000027709 Mccc1 ENSMUST00000199113 ENSMUSP00000143266 TRANSLATION nonsense_mediated_decay - - 1 255.0 14.0 5.18 0.0 242.6 0.0 -4,0 0.0008 12 -2.0 MINOR ENSMUSG00000027709 Mccc1 ENSMUST00000029259 ENSMUSP00000029259 TRANSLATION protein_coding - CCDS17307.1 1 717.0 27.0 12.74 1.2 595.4 0.0 -4,0 1.0 34 19.0 PRINCIPAL:1 ENSMUSG00000027709 Mccc1 ENSMUST00000200163 ENSMUSP00000143039 TRANSLATION nonsense_mediated_decay start - 5 201.0 18.0 4.35 0.0 225.5 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000027709 Mccc1 ENSMUST00000198515 - NO_TRANSLATION retained_intron ENSMUSG00000032952 Ap4b1 ENSMUST00000047285 ENSMUSP00000044262 TRANSLATION protein_coding - CCDS17696.1 1 738.0 0.0 5.875 13.8 385.6 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000032952 Ap4b1 ENSMUST00000199723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032952 Ap4b1 ENSMUST00000106824 ENSMUSP00000102437 TRANSLATION protein_coding - - 5 663.0 0.0 5.075 1.0 282.0 0.0 -4,-5 0.0157 9 4.398 MINOR ENSMUSG00000032952 Ap4b1 ENSMUST00000199686 ENSMUSP00000142457 TRANSLATION nonsense_mediated_decay start - 3 154.0 0.0 0.675 0.0 50.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000032952 Ap4b1 ENSMUST00000076599 ENSMUSP00000075904 TRANSLATION protein_coding - CCDS17696.1 1 738.0 0.0 5.875 13.8 385.6 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000032952 Ap4b1 ENSMUST00000106823 ENSMUSP00000102436 TRANSLATION protein_coding - CCDS51026.1 1 710.0 0.0 5.8 0.0 349.2 0.0 -4,-5 0.123 10 9.666 MINOR ENSMUSG00000032952 Ap4b1 ENSMUST00000200377 ENSMUSP00000143355 TRANSLATION protein_coding - - 5 570.0 0.0 4.075 1.0 236.1 0.0 -4,-6 0.0174 6 2.4 MINOR ENSMUSG00000036825 Ssx2ip ENSMUST00000106153 ENSMUSP00000101759 TRANSLATION protein_coding - CCDS38665.1 1 615.0 0.0 0.0 10.3 147.4 0.0 -4,-5 1.0 8 5.0 PRINCIPAL:4 ENSMUSG00000036825 Ssx2ip ENSMUST00000129978 ENSMUSP00000117501 TRANSLATION protein_coding stop - 3 134.0 0.0 0.0 0.0 56.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036825 Ssx2ip ENSMUST00000106149 ENSMUSP00000101755 TRANSLATION protein_coding - CCDS57260.1 1 614.0 0.0 0.0 10.3 147.4 0.0 -4,-5 0.9985 8 5.0 ALTERNATIVE:1 ENSMUSG00000036825 Ssx2ip ENSMUST00000149262 ENSMUSP00000122322 TRANSLATION protein_coding stop - 2 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036825 Ssx2ip ENSMUST00000039021 ENSMUSP00000045663 TRANSLATION protein_coding - CCDS57260.1 1 614.0 0.0 0.0 10.3 147.4 0.0 -4,-5 0.9985 8 5.0 ALTERNATIVE:1 ENSMUSG00000036825 Ssx2ip ENSMUST00000106151 ENSMUSP00000101757 TRANSLATION protein_coding - CCDS57260.1 1 614.0 0.0 0.0 10.3 147.4 0.0 -4,-5 0.9985 8 5.0 ALTERNATIVE:1 ENSMUSG00000036825 Ssx2ip ENSMUST00000141103 - NO_TRANSLATION retained_intron ENSMUSG00000057777 Mab21l2 ENSMUST00000191695 ENSMUSP00000159542 TRANSLATION protein_coding - CCDS17447.1 - 359.0 0.0 1.0 36.9 337.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057777 Mab21l2 ENSMUST00000077524 ENSMUSP00000076729 TRANSLATION protein_coding - CCDS17447.1 - 359.0 0.0 1.0 36.9 337.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042165 Adrm1b ENSMUST00000192538 ENSMUSP00000141274 TRANSLATION protein_coding - - - 407.0 0.0 1.0 21.8 225.1 0.0 -3,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038256 Bcl9 ENSMUST00000141861 - NO_TRANSLATION retained_intron ENSMUSG00000038256 Bcl9 ENSMUST00000046521 ENSMUSP00000046152 TRANSLATION protein_coding - CCDS17654.1 1 1425.0 0.0 1.4 11.8 66.8 0.0 -4,-2 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000038256 Bcl9 ENSMUST00000166341 ENSMUSP00000131692 TRANSLATION protein_coding - CCDS17654.1 1 1425.0 0.0 1.4 11.8 66.8 0.0 -4,-2 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000038256 Bcl9 ENSMUST00000196586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038256 Bcl9 ENSMUST00000127319 - NO_TRANSLATION retained_intron ENSMUSG00000038256 Bcl9 ENSMUST00000135247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038256 Bcl9 ENSMUST00000132266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038256 Bcl9 ENSMUST00000134695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064220 H2ac18 ENSMUST00000078756 ENSMUSP00000077814 TRANSLATION protein_coding - CCDS57242.1 - 130.0 0.0 1.0 12.5 135.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048304 Slitrk3 ENSMUST00000192477 ENSMUSP00000141236 TRANSLATION protein_coding - CCDS17410.1 1 980.0 0.0 0.16 11.8 98.0 1.0 1,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000048304 Slitrk3 ENSMUST00000059407 ENSMUSP00000088561 TRANSLATION protein_coding - CCDS17410.1 1 980.0 0.0 0.16 11.8 98.0 1.0 1,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000068887 Lce1j ENSMUST00000107304 ENSMUSP00000102925 TRANSLATION protein_coding - CCDS59647.1 - 139.0 0.0 0.0 0.0 30.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068887 Lce1j ENSMUST00000186525 ENSMUSP00000140507 TRANSLATION protein_coding - CCDS59647.1 3 139.0 0.0 0.0 0.0 30.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027994 Mcub ENSMUST00000122961 ENSMUSP00000120660 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0005 - -2.0 MINOR ENSMUSG00000027994 Mcub ENSMUST00000029624 ENSMUSP00000029624 TRANSLATION protein_coding - - 1 336.0 0.0 5.45 4.4 214.6 0.0 -4,0 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000027994 Mcub ENSMUST00000153506 ENSMUSP00000118170 TRANSLATION protein_coding - - 1 243.0 0.0 2.0 0.0 0.0 0.0 -4,0 0.0 1 0.0 MINOR ENSMUSG00000027994 Mcub ENSMUST00000146340 ENSMUSP00000115224 TRANSLATION protein_coding start/stop - 3 149.0 0.0 2.2 0.0 56.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027630 Tbl1xr1 ENSMUST00000192328 ENSMUSP00000141363 TRANSLATION protein_coding - CCDS17266.1 1 514.0 0.0 12.32 35.0 230.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000027630 Tbl1xr1 ENSMUST00000201509 ENSMUSP00000144547 TRANSLATION nonsense_mediated_decay - - 5 474.0 0.0 10.99 0.0 214.8 0.0 -4,-5 0.0283 6 -2.0 MINOR ENSMUSG00000027630 Tbl1xr1 ENSMUST00000063988 ENSMUSP00000067164 TRANSLATION protein_coding - CCDS17266.1 1 514.0 0.0 12.32 35.0 230.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000027630 Tbl1xr1 ENSMUST00000202747 ENSMUSP00000144436 TRANSLATION protein_coding - CCDS17266.1 1 514.0 0.0 12.32 35.0 230.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000027630 Tbl1xr1 ENSMUST00000200793 ENSMUSP00000144138 TRANSLATION protein_coding stop - 5 144.0 0.0 2.58 0.0 41.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027630 Tbl1xr1 ENSMUST00000193734 ENSMUSP00000142184 TRANSLATION protein_coding - CCDS17266.1 1 514.0 0.0 12.32 35.0 230.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000027630 Tbl1xr1 ENSMUST00000201467 ENSMUSP00000144340 TRANSLATION protein_coding start - 5 67.0 0.0 2.16 0.0 30.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027630 Tbl1xr1 ENSMUST00000202647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027630 Tbl1xr1 ENSMUST00000202149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027630 Tbl1xr1 ENSMUST00000202356 ENSMUSP00000144301 TRANSLATION protein_coding stop - 5 74.0 0.0 2.58 0.0 41.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027630 Tbl1xr1 ENSMUST00000200943 ENSMUSP00000144602 TRANSLATION protein_coding stop - 5 54.0 0.0 1.75 0.0 41.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028063 Lmna ENSMUST00000150496 - NO_TRANSLATION retained_intron ENSMUSG00000028063 Lmna ENSMUST00000135494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028063 Lmna ENSMUST00000029699 ENSMUSP00000029699 TRANSLATION protein_coding - CCDS38482.1 1 665.0 0.0 9.3 11.8 393.7 0.0 -4,-1 1.0 51 15.0 PRINCIPAL:1 ENSMUSG00000028063 Lmna ENSMUST00000120377 ENSMUSP00000113093 TRANSLATION protein_coding - CCDS50951.1 1 574.0 0.0 9.3 2.1 393.7 0.0 -4,-1 0.4516 45 12.306 MINOR ENSMUSG00000028063 Lmna ENSMUST00000036252 ENSMUSP00000040265 TRANSLATION protein_coding - CCDS38483.1 1 462.0 0.0 8.3 0.0 291.7 0.0 -4,-5 0.0131 35 4.002 MINOR ENSMUSG00000028063 Lmna ENSMUST00000147537 - NO_TRANSLATION retained_intron ENSMUSG00000028063 Lmna ENSMUST00000149068 ENSMUSP00000120784 TRANSLATION protein_coding stop - 2 117.0 0.0 1.0 0.0 99.6 0.0 -4,-1 0.0392 10 -2.0 MINOR ENSMUSG00000048100 Taf13 ENSMUST00000139603 - NO_TRANSLATION retained_intron ENSMUSG00000048100 Taf13 ENSMUST00000131814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048100 Taf13 ENSMUST00000143054 ENSMUSP00000121346 TRANSLATION protein_coding - CCDS17764.1 1 124.0 0.0 2.375 29.9 129.8 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000048100 Taf13 ENSMUST00000056292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034151 Zbbx ENSMUST00000107776 ENSMUSP00000103405 TRANSLATION protein_coding - - 5 581.0 8.0 0.0 0.0 25.9 0.0 -4,-5 0.0911 - 8.0 ALTERNATIVE:2 ENSMUSG00000034151 Zbbx ENSMUST00000107775 ENSMUSP00000103404 TRANSLATION protein_coding - - 1 374.0 8.0 0.0 0.0 25.9 0.0 -4,-5 0.723 - 8.0 PRINCIPAL:2 ENSMUSG00000034151 Zbbx ENSMUST00000107778 ENSMUSP00000103407 TRANSLATION protein_coding - CCDS17412.1 1 716.0 8.0 0.0 0.0 25.9 0.0 -4,-5 0.2626 1 8.0 ALTERNATIVE:2 ENSMUSG00000034151 Zbbx ENSMUST00000039269 ENSMUSP00000043970 TRANSLATION protein_coding - CCDS79924.1 1 711.0 8.0 0.0 0.0 25.9 0.0 -4,-5 0.2626 1 8.0 ALTERNATIVE:2 ENSMUSG00000034151 Zbbx ENSMUST00000124618 ENSMUSP00000122459 TRANSLATION protein_coding stop - 5 199.0 8.0 0.0 0.0 25.9 0.0 -4,-5 0.0432 - -2.0 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000191638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027763 Mbnl1 ENSMUST00000192086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027763 Mbnl1 ENSMUST00000192623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027763 Mbnl1 ENSMUST00000195832 - NO_TRANSLATION retained_intron ENSMUSG00000027763 Mbnl1 ENSMUST00000194201 ENSMUSP00000141954 TRANSLATION protein_coding - - 5 302.0 16.0 4.0 4.0 20.7 0.0 -4,-5 0.1301 1 14.214 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000194069 ENSMUSP00000141474 TRANSLATION protein_coding - CCDS79916.1 1 347.0 16.0 4.2 13.1 22.1 0.0 -4,-5 0.8675 2 16.484 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000193130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027763 Mbnl1 ENSMUST00000195817 ENSMUSP00000141576 TRANSLATION protein_coding start - 5 209.0 8.0 2.2 0.0 22.1 0.0 -2,-5 0.0039 - -2.0 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000193518 ENSMUSP00000142088 TRANSLATION protein_coding start - 5 302.0 8.0 2.2 0.0 22.1 0.0 -2,-5 0.0074 2 -2.0 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000193647 ENSMUSP00000141536 TRANSLATION protein_coding stop - 5 257.0 8.0 2.2 0.0 22.1 0.0 -2,-5 0.0058 2 -2.0 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000193175 - NO_TRANSLATION retained_intron ENSMUSG00000027763 Mbnl1 ENSMUST00000192520 - NO_TRANSLATION retained_intron ENSMUSG00000027763 Mbnl1 ENSMUST00000193517 ENSMUSP00000141287 TRANSLATION protein_coding - - 5 387.0 16.0 4.2 19.8 22.1 0.0 -4,-5 0.8536 2 17.856 PRINCIPAL:3 ENSMUSG00000027763 Mbnl1 ENSMUST00000191747 ENSMUSP00000142057 TRANSLATION protein_coding - CCDS79919.1 1 254.0 8.0 2.2 1.0 22.1 0.0 -2,-5 0.1221 - 4.664 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000192394 - NO_TRANSLATION retained_intron ENSMUSG00000027763 Mbnl1 ENSMUST00000195077 ENSMUSP00000142074 TRANSLATION protein_coding stop - 5 182.0 8.0 2.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000192757 ENSMUSP00000142045 TRANSLATION protein_coding start/stop - 2 192.0 5.0 1.7 0.0 22.1 0.0 -4,-5 0.009 - -2.0 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000195724 ENSMUSP00000141984 TRANSLATION protein_coding stop - 3 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000192807 ENSMUSP00000141915 TRANSLATION protein_coding - CCDS79918.1 1 289.0 8.0 2.2 3.2 22.1 0.0 -2,-5 0.1815 1 5.116 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000194003 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027763 Mbnl1 ENSMUST00000192637 - NO_TRANSLATION retained_intron ENSMUSG00000027763 Mbnl1 ENSMUST00000195001 ENSMUSP00000141848 TRANSLATION protein_coding stop - 2 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000195839 - NO_TRANSLATION retained_intron ENSMUSG00000027763 Mbnl1 ENSMUST00000192607 ENSMUSP00000142095 TRANSLATION protein_coding - CCDS79917.1 1 341.0 16.0 4.2 9.3 22.1 0.0 -4,-5 0.7339 1 15.704 MINOR ENSMUSG00000027763 Mbnl1 ENSMUST00000099087 ENSMUSP00000096686 TRANSLATION protein_coding - CCDS17376.1 1 381.0 16.0 4.2 20.5 22.1 0.0 -4,-5 1.0 1 18.0 ALTERNATIVE:1 ENSMUSG00000028145 Them4 ENSMUST00000198494 - NO_TRANSLATION retained_intron ENSMUSG00000028145 Them4 ENSMUST00000196824 - NO_TRANSLATION retained_intron ENSMUSG00000028145 Them4 ENSMUST00000049822 ENSMUSP00000062841 TRANSLATION protein_coding - CCDS38533.1 1 230.0 11.0 4.5 0.4 36.2 0.0 -4,0 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000027966 Col11a1 ENSMUST00000211802 ENSMUSP00000148798 TRANSLATION nonsense_mediated_decay start - 3 128.0 0.0 2.346 0.0 38.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027966 Col11a1 ENSMUST00000184978 ENSMUSP00000138879 TRANSLATION nonsense_mediated_decay start - 1 536.0 0.0 11.3 0.0 226.7 0.0 -4,-5 0.0002 2 -2.0 MINOR ENSMUSG00000027966 Col11a1 ENSMUST00000196345 - NO_TRANSLATION retained_intron ENSMUSG00000027966 Col11a1 ENSMUST00000123619 ENSMUSP00000121027 TRANSLATION protein_coding stop - 5 567.0 0.0 1.0 0.0 64.9 0.0 0,-3 0.0008 4 -2.0 MINOR ENSMUSG00000027966 Col11a1 ENSMUST00000196654 - NO_TRANSLATION retained_intron ENSMUSG00000027966 Col11a1 ENSMUST00000138680 - NO_TRANSLATION retained_intron ENSMUSG00000027966 Col11a1 ENSMUST00000092155 ENSMUSP00000089793 TRANSLATION protein_coding - CCDS17778.1 1 1804.0 0.0 27.88 9.7 579.8 0.0 0,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000038092 Hsd3b5 ENSMUST00000044094 ENSMUSP00000041442 TRANSLATION protein_coding - CCDS17666.1 1 373.0 27.0 3.0 5.6 345.4 0.0 -4,-7 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000027803 Wwtr1 ENSMUST00000029380 ENSMUSP00000029380 TRANSLATION protein_coding - CCDS38434.1 1 395.0 0.0 0.9 2.7 31.7 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:2 ENSMUSG00000027803 Wwtr1 ENSMUST00000120977 ENSMUSP00000113040 TRANSLATION protein_coding - CCDS50912.1 1 452.0 0.0 0.9 0.0 31.7 0.0 -4,-2 0.2649 1 8.0 ALTERNATIVE:2 ENSMUSG00000045326 Fndc7 ENSMUST00000053065 ENSMUSP00000051172 TRANSLATION protein_coding - CCDS51050.1 1 651.0 0.0 7.995 0.0 24.7 0.0 -1,-5 0.1332 1 6.002 MINOR ENSMUSG00000045326 Fndc7 ENSMUST00000123018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045326 Fndc7 ENSMUST00000102620 ENSMUSP00000099680 TRANSLATION protein_coding - CCDS17769.1 1 737.0 0.0 8.995 0.4 24.7 0.0 -1,-5 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000045326 Fndc7 ENSMUST00000180063 ENSMUSP00000136215 TRANSLATION protein_coding - - 5 737.0 0.0 8.83 0.4 24.7 0.0 -2,-1 0.6528 1 7.67 ALTERNATIVE:2 ENSMUSG00000045326 Fndc7 ENSMUST00000147002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045326 Fndc7 ENSMUST00000139137 - NO_TRANSLATION retained_intron ENSMUSG00000045326 Fndc7 ENSMUST00000151713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040809 Chil3 ENSMUST00000129563 - NO_TRANSLATION retained_intron ENSMUSG00000040809 Chil3 ENSMUST00000149836 ENSMUSP00000121823 TRANSLATION protein_coding start/stop - 3 58.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040809 Chil3 ENSMUST00000063062 ENSMUSP00000053923 TRANSLATION protein_coding - CCDS17718.1 1 398.0 2.0 8.33 2.0 276.0 0.0 3,-2 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000028080 Lrba ENSMUST00000195524 ENSMUSP00000141734 TRANSLATION protein_coding - - 1 758.0 0.0 10.7255 0.0 498.2 0.0 -4,-5 0.0062 15 0.0 MINOR ENSMUSG00000028080 Lrba ENSMUST00000212390 ENSMUSP00000148618 TRANSLATION protein_coding stop - 5 2124.0 0.0 5.8 0.0 667.5 0.0 -4,-5 0.0761 46 -2.0 MINOR ENSMUSG00000028080 Lrba ENSMUST00000195966 - NO_TRANSLATION retained_intron ENSMUSG00000028080 Lrba ENSMUST00000107635 ENSMUSP00000103261 TRANSLATION protein_coding - CCDS38470.1 1 2854.0 0.0 16.5255 2.1 1209.6 0.0 -4,-5 1.0 61 13.0 PRINCIPAL:1 ENSMUSG00000028080 Lrba ENSMUST00000194674 - NO_TRANSLATION retained_intron ENSMUSG00000028080 Lrba ENSMUST00000195398 - NO_TRANSLATION retained_intron ENSMUSG00000028080 Lrba ENSMUST00000194759 ENSMUSP00000142043 TRANSLATION protein_coding - CCDS79933.1 1 2790.0 0.0 15.977 0.0 1209.6 0.0 -4,-5 0.4885 58 10.902 MINOR ENSMUSG00000028080 Lrba ENSMUST00000192145 ENSMUSP00000142179 TRANSLATION protein_coding - CCDS79934.1 1 2577.0 0.0 14.8 0.0 1196.8 0.0 -4,-5 0.2642 52 7.782 MINOR ENSMUSG00000105053 Gm43064 ENSMUST00000199710 ENSMUSP00000143463 TRANSLATION nonsense_mediated_decay,RT - - 2 663.0 0.0 4.075 1.0 281.6 0.0 -4,-5 0.801 - -2.0 PRINCIPAL:1 ENSMUSG00000042306 S100a14 ENSMUST00000164481 ENSMUSP00000129862 TRANSLATION protein_coding - CCDS50971.1 2 55.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.014 1 3.426 MINOR ENSMUSG00000042306 S100a14 ENSMUST00000167598 ENSMUSP00000126821 TRANSLATION protein_coding - CCDS17535.1 1 104.0 4.0 2.33 10.7 49.2 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000042306 S100a14 ENSMUST00000199538 ENSMUSP00000142428 TRANSLATION protein_coding - CCDS17535.1 2 104.0 4.0 2.33 10.7 49.2 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000042306 S100a14 ENSMUST00000200565 - NO_TRANSLATION retained_intron ENSMUSG00000041959 S100a10 ENSMUST00000045756 ENSMUSP00000036949 TRANSLATION protein_coding - CCDS38526.1 1 97.0 4.0 2.0 28.9 53.9 1.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000041959 S100a10 ENSMUST00000148400 - NO_TRANSLATION retained_intron ENSMUSG00000041959 S100a10 ENSMUST00000170612 ENSMUSP00000130712 TRANSLATION protein_coding - CCDS38526.1 3 97.0 4.0 2.0 28.9 53.9 1.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000074342 I830077J02Rik ENSMUST00000196099 ENSMUSP00000142349 TRANSLATION nonsense_mediated_decay start - 5 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0149 - -2.0 MINOR ENSMUSG00000074342 I830077J02Rik ENSMUST00000126230 - NO_TRANSLATION retained_intron ENSMUSG00000074342 I830077J02Rik ENSMUST00000098758 ENSMUSP00000096354 TRANSLATION protein_coding - CCDS17713.1 1 132.0 0.0 1.0 1.0 0.0 0.0 -4,-7 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000074489 Bglap3 ENSMUST00000107542 ENSMUSP00000103166 TRANSLATION protein_coding - CCDS17472.1 1 95.0 2.0 0.8 2.8 0.0 0.0 4,-1 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000074489 Bglap3 ENSMUST00000107543 ENSMUSP00000103167 TRANSLATION protein_coding - CCDS17472.1 1 95.0 2.0 0.8 2.8 0.0 0.0 4,-1 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000074489 Bglap3 ENSMUST00000152477 - NO_TRANSLATION retained_intron ENSMUSG00000074489 Bglap3 ENSMUST00000140259 - NO_TRANSLATION retained_intron ENSMUSG00000074489 Bglap3 ENSMUST00000075523 ENSMUSP00000074965 TRANSLATION protein_coding - CCDS17472.1 1 95.0 2.0 0.8 2.8 0.0 0.0 4,-1 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000005034 Prkacb ENSMUST00000005164 ENSMUSP00000005164 TRANSLATION protein_coding - CCDS51092.1 1 398.0 18.0 9.25 23.9 245.8 0.0 -4,-7 0.8511 6 19.826 MINOR ENSMUSG00000005034 Prkacb ENSMUST00000197616 ENSMUSP00000142490 TRANSLATION protein_coding stop - 1 189.0 14.0 4.75 0.0 103.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005034 Prkacb ENSMUST00000106138 ENSMUSP00000101744 TRANSLATION protein_coding - CCDS51091.1 1 339.0 18.0 9.25 24.1 245.8 0.0 -4,-5 0.9406 5 19.85 MINOR ENSMUSG00000005034 Prkacb ENSMUST00000199722 ENSMUSP00000143303 TRANSLATION protein_coding stop - 1 106.0 7.0 3.25 0.0 83.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000005034 Prkacb ENSMUST00000106137 ENSMUSP00000101743 TRANSLATION protein_coding - CCDS51090.1 1 338.0 18.0 9.25 24.1 245.8 0.0 -4,-5 0.9383 5 19.85 MINOR ENSMUSG00000005034 Prkacb ENSMUST00000144369 - NO_TRANSLATION retained_intron ENSMUSG00000005034 Prkacb ENSMUST00000196344 - NO_TRANSLATION retained_intron ENSMUSG00000005034 Prkacb ENSMUST00000102515 ENSMUSP00000099573 TRANSLATION protein_coding - CCDS17906.1 1 351.0 18.0 9.75 33.4 245.8 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028158 Mttp ENSMUST00000029805 ENSMUSP00000029805 TRANSLATION protein_coding - CCDS38650.1 1 894.0 0.0 16.8 18.0 238.2 0.0 3,-2 1.0 41 16.0 PRINCIPAL:1 ENSMUSG00000028158 Mttp ENSMUST00000098580 ENSMUSP00000096179 TRANSLATION protein_coding - CCDS51080.1 5 909.0 0.0 16.8 0.0 238.2 0.0 0,-3 0.337 41 12.0 MINOR ENSMUSG00000028158 Mttp ENSMUST00000197680 - NO_TRANSLATION retained_intron ENSMUSG00000027673 Ndufb5 ENSMUST00000127477 ENSMUSP00000114963 TRANSLATION protein_coding - CCDS17300.1 1 189.0 0.0 4.83 21.3 292.6 2.0 -2,2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000027673 Ndufb5 ENSMUST00000029217 ENSMUSP00000029217 TRANSLATION nonsense_mediated_decay start - 3 63.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000027673 Ndufb5 ENSMUST00000122290 ENSMUSP00000113602 TRANSLATION protein_coding - - 2 119.0 0.0 3.75 0.1 220.3 2.0 -2,-5 0.0022 7 5.502 MINOR ENSMUSG00000027673 Ndufb5 ENSMUST00000139593 ENSMUSP00000115088 TRANSLATION protein_coding stop - 3 172.0 0.0 4.33 0.0 253.8 2.0 -4,-5 0.0043 4 -2.0 MINOR ENSMUSG00000027673 Ndufb5 ENSMUST00000121778 ENSMUSP00000113169 TRANSLATION protein_coding - - 3 181.0 0.0 3.58 0.0 235.3 2.0 -2,2 0.0143 4 6.06 MINOR ENSMUSG00000027673 Ndufb5 ENSMUST00000154257 ENSMUSP00000117240 TRANSLATION protein_coding start - 2 135.0 0.0 3.58 0.0 221.6 2.0 -4,-1 0.0022 4 -2.0 MINOR ENSMUSG00000027673 Ndufb5 ENSMUST00000195565 - NO_TRANSLATION retained_intron ENSMUSG00000027673 Ndufb5 ENSMUST00000156174 ENSMUSP00000123596 TRANSLATION nonsense_mediated_decay start - 5 63.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000005628 Tmod4 ENSMUST00000130545 - NO_TRANSLATION retained_intron ENSMUSG00000005628 Tmod4 ENSMUST00000107227 ENSMUSP00000102846 TRANSLATION protein_coding - CCDS17601.1 5 345.0 0.0 5.994 25.9 202.0 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000005628 Tmod4 ENSMUST00000131597 ENSMUSP00000116341 TRANSLATION protein_coding stop - 5 184.0 0.0 1.914 0.0 202.0 0.0 -4,-5 0.0061 5 -2.0 MINOR ENSMUSG00000005628 Tmod4 ENSMUST00000149898 - NO_TRANSLATION retained_intron ENSMUSG00000005628 Tmod4 ENSMUST00000135867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005628 Tmod4 ENSMUST00000005769 ENSMUSP00000005769 TRANSLATION protein_coding - CCDS17601.1 1 345.0 0.0 5.994 25.9 202.0 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000091512 Lamtor3 ENSMUST00000196632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091512 Lamtor3 ENSMUST00000200656 - NO_TRANSLATION retained_intron ENSMUSG00000091512 Lamtor3 ENSMUST00000197817 ENSMUSP00000143656 TRANSLATION protein_coding stop - 5 36.0 0.0 1.25 0.0 42.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000091512 Lamtor3 ENSMUST00000168345 ENSMUSP00000130811 TRANSLATION protein_coding - CCDS51078.1 1 124.0 0.0 3.75 32.7 166.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000091512 Lamtor3 ENSMUST00000200269 - NO_TRANSLATION retained_intron ENSMUSG00000091512 Lamtor3 ENSMUST00000200107 - NO_TRANSLATION retained_intron ENSMUSG00000091512 Lamtor3 ENSMUST00000197064 ENSMUSP00000142512 TRANSLATION protein_coding - CCDS51078.1 3 124.0 0.0 3.75 32.7 166.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000091512 Lamtor3 ENSMUST00000197798 - NO_TRANSLATION retained_intron ENSMUSG00000028164 Manba ENSMUST00000123061 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028164 Manba ENSMUST00000153412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028164 Manba ENSMUST00000130147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028164 Manba ENSMUST00000144654 - NO_TRANSLATION retained_intron ENSMUSG00000028164 Manba ENSMUST00000134095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028164 Manba ENSMUST00000147872 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028164 Manba ENSMUST00000029814 ENSMUSP00000029814 TRANSLATION protein_coding - CCDS17857.1 1 879.0 5.0 16.75 1.2 34.0 0.0 4,-1 1.0 22 18.0 PRINCIPAL:1 ENSMUSG00000028164 Manba ENSMUST00000131610 ENSMUSP00000122148 TRANSLATION nonsense_mediated_decay - - 1 186.0 0.0 4.0 0.0 0.0 0.0 4,-1 0.0012 5 -2.0 MINOR ENSMUSG00000028164 Manba ENSMUST00000140496 - NO_TRANSLATION retained_intron ENSMUSG00000028164 Manba ENSMUST00000140893 - NO_TRANSLATION retained_intron ENSMUSG00000028164 Manba ENSMUST00000134478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046722 Cdc42se1 ENSMUST00000053872 ENSMUSP00000052986 TRANSLATION protein_coding - CCDS38545.1 1 80.0 0.0 1.182 23.2 21.6 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000046722 Cdc42se1 ENSMUST00000107200 ENSMUSP00000102818 TRANSLATION protein_coding - - 3 52.0 0.0 1.05 0.0 21.6 0.0 -4,-5 0.0082 - 11.328 MINOR ENSMUSG00000046722 Cdc42se1 ENSMUST00000107201 ENSMUSP00000102819 TRANSLATION protein_coding - CCDS38545.1 1 80.0 0.0 1.182 23.2 21.6 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000046722 Cdc42se1 ENSMUST00000149804 - NO_TRANSLATION retained_intron ENSMUSG00000046722 Cdc42se1 ENSMUST00000107199 ENSMUSP00000102817 TRANSLATION protein_coding - - 5 52.0 0.0 1.05 0.0 21.6 0.0 -4,-5 0.0082 - 11.328 MINOR ENSMUSG00000004894 Hapln2 ENSMUST00000162352 - NO_TRANSLATION retained_intron ENSMUSG00000004894 Hapln2 ENSMUST00000005014 ENSMUSP00000005014 TRANSLATION protein_coding - CCDS17463.1 1 341.0 0.0 5.5 11.5 243.9 0.0 2,-1 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000004894 Hapln2 ENSMUST00000160737 - NO_TRANSLATION retained_intron ENSMUSG00000004894 Hapln2 ENSMUST00000160150 ENSMUSP00000125271 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 0.0 0.0 0.0 0.0 2,-1 0.0019 - -2.0 MINOR ENSMUSG00000027956 Tmem144 ENSMUST00000168038 ENSMUSP00000127837 TRANSLATION protein_coding - CCDS17421.1 1 348.0 0.0 0.0 11.3 460.7 10.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000027956 Tmem144 ENSMUST00000192341 ENSMUSP00000142289 TRANSLATION protein_coding stop - 5 35.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000027956 Tmem144 ENSMUST00000194338 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027956 Tmem144 ENSMUST00000029568 ENSMUSP00000029568 TRANSLATION protein_coding - CCDS17421.1 1 348.0 0.0 0.0 11.3 460.7 10.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000027956 Tmem144 ENSMUST00000193410 ENSMUSP00000141832 TRANSLATION protein_coding stop - 5 137.0 0.0 0.0 0.0 193.0 4.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000027750 Postn ENSMUST00000154157 - NO_TRANSLATION retained_intron ENSMUSG00000027750 Postn ENSMUST00000117373 ENSMUSP00000112735 TRANSLATION protein_coding - CCDS57212.1 1 783.0 0.0 14.8 5.4 347.8 0.0 4,-1 0.8705 31 10.0 ALTERNATIVE:1 ENSMUSG00000027750 Postn ENSMUST00000127452 - NO_TRANSLATION retained_intron ENSMUSG00000027750 Postn ENSMUST00000107985 ENSMUSP00000103619 TRANSLATION protein_coding - CCDS57211.1 1 810.0 0.0 14.8 5.4 347.8 0.0 4,-1 0.9998 32 10.0 PRINCIPAL:3 ENSMUSG00000027750 Postn ENSMUST00000145036 - NO_TRANSLATION retained_intron ENSMUSG00000027750 Postn ENSMUST00000073012 ENSMUSP00000072773 TRANSLATION protein_coding - CCDS17351.1 1 811.0 0.0 14.8 5.4 347.8 0.0 4,-1 1.0 31 10.0 ALTERNATIVE:1 ENSMUSG00000027750 Postn ENSMUST00000081564 ENSMUSP00000080276 TRANSLATION protein_coding - - 5 838.0 0.0 14.8 5.4 347.8 0.0 4,-1 0.7351 32 10.0 ALTERNATIVE:1 ENSMUSG00000027750 Postn ENSMUST00000143258 ENSMUSP00000116685 TRANSLATION protein_coding start - 2 102.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 5 -2.0 MINOR ENSMUSG00000027750 Postn ENSMUST00000150868 - NO_TRANSLATION retained_intron ENSMUSG00000041734 Kirrel ENSMUST00000159976 ENSMUSP00000125525 TRANSLATION protein_coding - CCDS17450.1 1 789.0 0.0 11.132 0.4 123.4 4.0 -4,-7 0.4704 17 8.0 ALTERNATIVE:2 ENSMUSG00000041734 Kirrel ENSMUST00000041732 ENSMUSP00000043756 TRANSLATION protein_coding - - 1 634.0 0.0 11.132 0.0 123.9 4.0 -4,-7 0.7683 12 8.0 PRINCIPAL:2 ENSMUSG00000041734 Kirrel ENSMUST00000107618 ENSMUSP00000103243 TRANSLATION protein_coding - CCDS17450.1 5 789.0 0.0 11.132 0.4 123.4 4.0 -4,-7 0.4704 17 8.0 ALTERNATIVE:2 ENSMUSG00000027855 Sycp1 ENSMUST00000196988 ENSMUSP00000143651 TRANSLATION protein_coding - CCDS38567.1 1 993.0 0.0 5.7 5.6 1520.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027855 Sycp1 ENSMUST00000029448 ENSMUSP00000029448 TRANSLATION protein_coding - CCDS38567.1 1 993.0 0.0 5.7 5.6 1520.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027855 Sycp1 ENSMUST00000199930 ENSMUSP00000143493 TRANSLATION protein_coding stop - 3 182.0 0.0 1.75 0.0 179.2 0.0 -4,-7 0.0003 - -2.0 MINOR ENSMUSG00000027855 Sycp1 ENSMUST00000198651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027925 Sprr2j-ps ENSMUST00000029533 ENSMUSP00000029533 TRANSLATION protein_coding - - 1 109.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000058174 Gm5148 ENSMUST00000108105 ENSMUSP00000103740 TRANSLATION protein_coding - CCDS50896.1 1 154.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.8477 - 0.0 PRINCIPAL:1 ENSMUSG00000058174 Gm5148 ENSMUST00000099128 ENSMUSP00000096731 TRANSLATION protein_coding - CCDS50896.1 1 154.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.8477 - 0.0 PRINCIPAL:1 ENSMUSG00000058174 Gm5148 ENSMUST00000079755 ENSMUSP00000078691 TRANSLATION protein_coding - CCDS50896.1 1 154.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.8477 - 0.0 PRINCIPAL:1 ENSMUSG00000058174 Gm5148 ENSMUST00000134904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048039 Isg20l2 ENSMUST00000055984 ENSMUSP00000059783 TRANSLATION protein_coding - CCDS17459.1 1 368.0 8.0 1.8 0.4 41.9 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000028195 Ccn1 ENSMUST00000029846 ENSMUSP00000029846 TRANSLATION protein_coding - CCDS17895.1 1 379.0 3.0 1.3 10.9 142.5 0.0 3,-2 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000062778 Chia1 ENSMUST00000143128 - NO_TRANSLATION retained_intron ENSMUSG00000062778 Chia1 ENSMUST00000079132 ENSMUSP00000078134 TRANSLATION protein_coding - CCDS38585.1 1 473.0 2.0 9.198 5.6 363.8 0.0 4,-1 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000062778 Chia1 ENSMUST00000139086 ENSMUSP00000121967 TRANSLATION protein_coding stop - 5 215.0 2.0 5.25 0.0 213.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000087260 Lamtor5 ENSMUST00000199317 ENSMUSP00000143494 TRANSLATION protein_coding - - 1 91.0 0.0 2.75 32.0 117.2 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000087260 Lamtor5 ENSMUST00000145735 ENSMUSP00000129012 TRANSLATION protein_coding - CCDS51042.1 1 145.0 0.0 2.75 2.4 117.2 0.0 -4,-1 0.3831 3 12.18 MINOR ENSMUSG00000028030 Tbck ENSMUST00000029664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028030 Tbck ENSMUST00000169172 ENSMUSP00000129205 TRANSLATION protein_coding - CCDS51070.1 5 893.0 0.0 6.27 27.6 326.4 0.0 -4,-7 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000028030 Tbck ENSMUST00000198147 - NO_TRANSLATION retained_intron ENSMUSG00000028030 Tbck ENSMUST00000196491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033860 Fgg ENSMUST00000194175 ENSMUSP00000141648 TRANSLATION protein_coding - CCDS84633.1 1 443.0 9.0 7.5 8.1 481.9 0.0 4,-1 0.941 20 16.505 ALTERNATIVE:1 ENSMUSG00000033860 Fgg ENSMUST00000048486 ENSMUSP00000037018 TRANSLATION protein_coding - CCDS38462.1 1 436.0 9.0 7.5 9.5 481.9 0.0 4,-1 1.0 20 17.0 PRINCIPAL:4 ENSMUSG00000047557 Lxn ENSMUST00000058981 ENSMUSP00000060732 TRANSLATION protein_coding - CCDS17397.1 1 222.0 0.0 5.5 18.7 315.5 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000047557 Lxn ENSMUST00000160827 - NO_TRANSLATION retained_intron ENSMUSG00000047557 Lxn ENSMUST00000160202 - NO_TRANSLATION retained_intron ENSMUSG00000027663 Zmat3 ENSMUST00000195055 - NO_TRANSLATION retained_intron ENSMUSG00000027663 Zmat3 ENSMUST00000029199 ENSMUSP00000029199 TRANSLATION protein_coding - CCDS17293.1 5 290.0 12.0 -0.102 19.2 96.7 0.0 -4,-1 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000027663 Zmat3 ENSMUST00000139660 ENSMUSP00000141511 TRANSLATION protein_coding stop - 3 29.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0331 - -2.0 MINOR ENSMUSG00000045539 Sprr3 ENSMUST00000058142 ENSMUSP00000056287 TRANSLATION protein_coding - CCDS17558.1 3 238.0 0.0 0.0 0.0 112.3 0.0 -4,-7 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000049100 Pcdh10 ENSMUST00000193252 ENSMUSP00000141529 TRANSLATION protein_coding - CCDS79902.1 - 896.0 53.0 1.0 1.0 458.1 3.0 4,-1 0.4928 9 14.0 MINOR ENSMUSG00000049100 Pcdh10 ENSMUST00000195655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049100 Pcdh10 ENSMUST00000170695 ENSMUSP00000132769 TRANSLATION protein_coding - CCDS50902.1 1 1040.0 53.0 1.0 8.6 458.1 3.0 4,-1 1.0 16 17.0 PRINCIPAL:4 ENSMUSG00000049100 Pcdh10 ENSMUST00000166126 ENSMUSP00000131073 TRANSLATION protein_coding - CCDS50903.1 1 1057.0 53.0 1.0 4.2 458.1 3.0 4,-1 0.8236 16 15.263 MINOR ENSMUSG00000049100 Pcdh10 ENSMUST00000171554 ENSMUSP00000131600 TRANSLATION protein_coding - CCDS50901.1 1 1047.0 53.0 1.0 6.8 458.1 3.0 4,-1 0.8868 16 16.289 ALTERNATIVE:1 ENSMUSG00000102805 Gm37240 ENSMUST00000154148 ENSMUSP00000116393 TRANSLATION protein_coding,RT - - 1 252.0 0.0 4.5 4.6 269.6 0.0 -4,-5 0.868 - -2.0 PRINCIPAL:1 ENSMUSG00000102805 Gm37240 ENSMUST00000125216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102805 Gm37240 ENSMUST00000146862 - NO_TRANSLATION retained_intron ENSMUSG00000028049 Scamp3 ENSMUST00000098941 ENSMUSP00000096540 TRANSLATION protein_coding - CCDS84641.1 1 315.0 0.0 4.6 0.0 129.2 4.0 -4,-5 0.0156 9 4.002 MINOR ENSMUSG00000028049 Scamp3 ENSMUST00000136165 - NO_TRANSLATION retained_intron ENSMUSG00000028049 Scamp3 ENSMUST00000124291 - NO_TRANSLATION retained_intron ENSMUSG00000028049 Scamp3 ENSMUST00000029684 ENSMUSP00000029684 TRANSLATION protein_coding - CCDS50959.1 1 349.0 0.0 5.6 14.5 228.9 5.0 -4,-5 0.9939 9 11.7 ALTERNATIVE:1 ENSMUSG00000028049 Scamp3 ENSMUST00000148881 - NO_TRANSLATION retained_intron ENSMUSG00000028049 Scamp3 ENSMUST00000120697 ENSMUSP00000112846 TRANSLATION protein_coding - CCDS84640.1 1 350.0 0.0 5.6 15.6 228.9 5.0 -4,-5 1.0 9 12.0 PRINCIPAL:4 ENSMUSG00000028049 Scamp3 ENSMUST00000156447 - NO_TRANSLATION retained_intron ENSMUSG00000028049 Scamp3 ENSMUST00000129294 - NO_TRANSLATION retained_intron ENSMUSG00000027528 Fabp9 ENSMUST00000191678 ENSMUSP00000142000 TRANSLATION protein_coding - - 1 142.0 20.0 3.25 0.0 77.4 0.0 -4,-7 0.0309 8 18.0 MINOR ENSMUSG00000027528 Fabp9 ENSMUST00000193487 ENSMUSP00000141926 TRANSLATION protein_coding - - 3 108.0 18.0 2.25 0.0 49.7 0.0 -4,-7 0.0 6 12.522 MINOR ENSMUSG00000027528 Fabp9 ENSMUST00000029038 ENSMUSP00000029038 TRANSLATION protein_coding - CCDS17237.1 1 132.0 20.0 3.25 20.5 77.4 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000095870 Lce1k ENSMUST00000179917 ENSMUSP00000137052 TRANSLATION protein_coding - CCDS57227.1 2 125.0 0.0 0.0 0.0 38.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033377 Palmd ENSMUST00000119557 ENSMUSP00000113107 TRANSLATION protein_coding - - 1 551.0 0.0 0.0 0.0 182.5 0.0 -4,-5 0.3635 10 5.874 MINOR ENSMUSG00000033377 Palmd ENSMUST00000040097 ENSMUSP00000044693 TRANSLATION protein_coding - CCDS17793.1 1 551.0 0.0 0.0 8.7 184.6 0.0 -4,-5 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000033377 Palmd ENSMUST00000143611 ENSMUSP00000122725 TRANSLATION protein_coding stop - 5 122.0 0.0 0.0 0.0 34.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000033377 Palmd ENSMUST00000197659 - NO_TRANSLATION retained_intron ENSMUSG00000033831 Fgb ENSMUST00000048246 ENSMUSP00000039472 TRANSLATION protein_coding - CCDS17432.1 1 481.0 7.0 6.4 0.3 471.6 0.0 4,-1 1.0 28 18.0 PRINCIPAL:1 ENSMUSG00000037643 Prkci ENSMUST00000136086 ENSMUSP00000119192 TRANSLATION protein_coding start - 3 118.0 9.0 2.75 0.0 108.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037643 Prkci ENSMUST00000108249 ENSMUSP00000103884 TRANSLATION protein_coding - CCDS17289.2 1 595.0 27.0 12.13 0.0 363.1 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000037643 Prkci ENSMUST00000130238 ENSMUSP00000123671 TRANSLATION protein_coding stop - 5 183.0 9.0 3.35 0.0 101.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037643 Prkci ENSMUST00000123971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037643 Prkci ENSMUST00000130706 - NO_TRANSLATION retained_intron ENSMUSG00000042250 Pglyrp4 ENSMUST00000169698 ENSMUSP00000128113 TRANSLATION protein_coding - CCDS50972.1 1 375.0 3.0 3.6 6.4 88.9 0.0 4,-1 0.8875 1 11.0 ALTERNATIVE:1 ENSMUSG00000042250 Pglyrp4 ENSMUST00000156268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042250 Pglyrp4 ENSMUST00000047745 ENSMUSP00000040755 TRANSLATION protein_coding - CCDS17544.1 1 374.0 4.0 3.6 6.4 90.3 0.0 4,-1 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000068798 Rap1a ENSMUST00000198004 ENSMUSP00000142733 TRANSLATION protein_coding stop - 5 109.0 18.0 2.75 0.0 118.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000068798 Rap1a ENSMUST00000197094 ENSMUSP00000142419 TRANSLATION protein_coding - - 3 118.0 21.0 3.0 0.0 60.7 0.0 -4,-6 0.0 1 6.336 MINOR ENSMUSG00000068798 Rap1a ENSMUST00000090678 ENSMUSP00000088174 TRANSLATION protein_coding - CCDS17711.1 1 184.0 25.0 4.5 36.9 189.8 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000068798 Rap1a ENSMUST00000199969 ENSMUSP00000142634 TRANSLATION nonsense_mediated_decay - - 5 159.0 25.0 3.75 0.3 182.6 0.0 -4,-6 0.005 3 -2.0 MINOR ENSMUSG00000028121 Bcar3 ENSMUST00000200544 - NO_TRANSLATION retained_intron ENSMUSG00000028121 Bcar3 ENSMUST00000196134 - NO_TRANSLATION retained_intron ENSMUSG00000028121 Bcar3 ENSMUST00000197590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028121 Bcar3 ENSMUST00000198659 ENSMUSP00000143112 TRANSLATION protein_coding stop - 2 186.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000028121 Bcar3 ENSMUST00000197956 - NO_TRANSLATION retained_intron ENSMUSG00000028121 Bcar3 ENSMUST00000199358 ENSMUSP00000142340 TRANSLATION protein_coding stop - 2 144.0 0.0 0.9 0.0 55.1 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000028121 Bcar3 ENSMUST00000199344 ENSMUSP00000143711 TRANSLATION protein_coding stop - 5 260.0 0.0 2.25 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000028121 Bcar3 ENSMUST00000029766 ENSMUSP00000029766 TRANSLATION protein_coding - CCDS17810.1 1 820.0 0.0 7.22445 8.1 95.6 0.0 -4,-1 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000028121 Bcar3 ENSMUST00000197959 - NO_TRANSLATION retained_intron ENSMUSG00000028121 Bcar3 ENSMUST00000197073 ENSMUSP00000142469 TRANSLATION protein_coding stop - 2 178.0 0.0 1.01445 0.0 55.1 0.0 -4,-7 0.0009 1 -2.0 MINOR ENSMUSG00000027674 Pex5l ENSMUST00000193681 ENSMUSP00000141454 TRANSLATION protein_coding - CCDS79894.1 1 650.0 0.0 4.814 6.7 60.1 0.0 -4,-6 0.8585 16 9.652 PRINCIPAL:3 ENSMUSG00000027674 Pex5l ENSMUST00000108221 ENSMUSP00000103856 TRANSLATION protein_coding - CCDS50888.1 1 344.0 0.0 4.814 0.0 60.1 0.0 -4,-5 0.1487 12 8.0 MINOR ENSMUSG00000027674 Pex5l ENSMUST00000193289 ENSMUSP00000142008 TRANSLATION protein_coding - CCDS79894.1 1 650.0 0.0 4.814 6.7 60.1 0.0 -4,-6 0.8585 16 9.652 PRINCIPAL:3 ENSMUSG00000027674 Pex5l ENSMUST00000192093 ENSMUSP00000141387 TRANSLATION protein_coding - CCDS17302.1 1 615.0 0.0 4.814 7.4 60.1 0.0 -4,-6 0.85 15 9.856 ALTERNATIVE:1 ENSMUSG00000027674 Pex5l ENSMUST00000108219 - NO_TRANSLATION retained_intron ENSMUSG00000027674 Pex5l ENSMUST00000194016 ENSMUSP00000142196 TRANSLATION protein_coding - CCDS79894.1 1 650.0 0.0 4.814 6.7 60.1 0.0 -4,-6 0.8585 16 9.652 PRINCIPAL:3 ENSMUSG00000027674 Pex5l ENSMUST00000108226 ENSMUSP00000103861 TRANSLATION protein_coding - CCDS50889.1 1 567.0 0.0 4.814 7.9 60.1 0.0 -4,-5 1.0 15 10.0 ALTERNATIVE:1 ENSMUSG00000027674 Pex5l ENSMUST00000108224 ENSMUSP00000103859 TRANSLATION protein_coding - CCDS79893.1 1 591.0 0.0 4.814 0.7 60.1 0.0 -4,-5 0.3326 15 8.0 MINOR ENSMUSG00000027674 Pex5l ENSMUST00000108225 ENSMUSP00000103860 TRANSLATION protein_coding - CCDS17302.1 5 615.0 0.0 4.814 7.4 60.1 0.0 -4,-6 0.85 15 9.856 ALTERNATIVE:1 ENSMUSG00000027674 Pex5l ENSMUST00000194627 - NO_TRANSLATION retained_intron ENSMUSG00000027674 Pex5l ENSMUST00000155264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027674 Pex5l ENSMUST00000078226 ENSMUSP00000077353 TRANSLATION protein_coding - CCDS17302.1 1 615.0 0.0 4.814 7.4 60.1 0.0 -4,-6 0.85 15 9.856 ALTERNATIVE:1 ENSMUSG00000041220 Elovl6 ENSMUST00000197070 ENSMUSP00000143131 TRANSLATION protein_coding - - 1 74.0 0.0 2.5 0.0 31.8 2.0 -4,-6 0.0015 - 0.0 MINOR ENSMUSG00000041220 Elovl6 ENSMUST00000198369 ENSMUSP00000143736 TRANSLATION protein_coding stop - 3 36.0 0.0 1.25 0.0 0.0 3.0 -2,-5 0.0004 - -2.0 MINOR ENSMUSG00000041220 Elovl6 ENSMUST00000199910 ENSMUSP00000142832 TRANSLATION protein_coding - CCDS38632.1 1 267.0 0.0 5.5 23.9 233.1 10.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000041220 Elovl6 ENSMUST00000071402 ENSMUSP00000071351 TRANSLATION protein_coding - CCDS38632.1 1 267.0 0.0 5.5 23.9 233.1 10.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000041220 Elovl6 ENSMUST00000197235 ENSMUSP00000143143 TRANSLATION protein_coding stop - 3 200.0 0.0 3.25 0.0 196.3 7.0 -2,-5 0.0046 2 -2.0 MINOR ENSMUSG00000055436 Srsf11 ENSMUST00000133090 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000196034 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000140491 ENSMUSP00000118767 TRANSLATION nonsense_mediated_decay start - 5 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055436 Srsf11 ENSMUST00000126377 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000121326 ENSMUSP00000113685 TRANSLATION protein_coding - CCDS51103.1 5 511.0 0.0 0.0 0.4 32.0 0.0 -4,-1 0.2707 5 2.0 ALTERNATIVE:2 ENSMUSG00000055436 Srsf11 ENSMUST00000137444 ENSMUSP00000122686 TRANSLATION protein_coding stop - 5 192.0 0.0 0.0 0.0 32.0 0.0 -4,-6 0.0353 4 -2.0 MINOR ENSMUSG00000055436 Srsf11 ENSMUST00000145267 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000126716 ENSMUSP00000114370 TRANSLATION nonsense_mediated_decay - - 5 112.0 0.0 0.0 0.0 32.0 0.0 -4,-6 0.0364 2 -2.0 MINOR ENSMUSG00000055436 Srsf11 ENSMUST00000069025 ENSMUSP00000063916 TRANSLATION protein_coding start - 5 500.0 0.0 0.0 0.0 32.0 0.0 -4,-1 0.1204 5 -2.0 MINOR ENSMUSG00000055436 Srsf11 ENSMUST00000199742 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000127778 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000156303 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000197292 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000152274 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000199520 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000089922 - NO_TRANSLATION retained_intron ENSMUSG00000055436 Srsf11 ENSMUST00000198705 ENSMUSP00000142759 TRANSLATION protein_coding start/stop - 5 175.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000055436 Srsf11 ENSMUST00000072875 ENSMUSP00000072651 TRANSLATION protein_coding - CCDS51102.1 1 476.0 0.0 0.0 0.1 32.0 0.0 -4,-6 1.0 5 2.0 PRINCIPAL:2 ENSMUSG00000055436 Srsf11 ENSMUST00000147304 ENSMUSP00000115487 TRANSLATION nonsense_mediated_decay start - 3 101.0 0.0 0.0 0.0 32.0 0.0 -4,-5 0.0371 2 -2.0 MINOR ENSMUSG00000074433 Lce3e ENSMUST00000098886 ENSMUSP00000096484 TRANSLATION protein_coding - CCDS57229.1 3 98.0 0.0 0.0 0.3 102.4 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027971 Ndst4 ENSMUST00000172632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027971 Ndst4 ENSMUST00000173932 ENSMUSP00000133341 TRANSLATION protein_coding - CCDS17820.1 5 872.0 18.0 6.9 22.6 952.2 0.0 -1,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000027971 Ndst4 ENSMUST00000198101 ENSMUSP00000142414 TRANSLATION protein_coding start/stop - 3 157.0 4.0 3.1 0.0 77.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027971 Ndst4 ENSMUST00000147016 - NO_TRANSLATION retained_intron ENSMUSG00000027971 Ndst4 ENSMUST00000174648 ENSMUSP00000133575 TRANSLATION protein_coding - - 1 364.0 18.0 6.9 0.0 143.7 0.0 -4,-5 0.032 - 12.0 MINOR ENSMUSG00000027971 Ndst4 ENSMUST00000144344 ENSMUSP00000120687 TRANSLATION protein_coding start - 5 205.0 0.0 0.0 0.0 371.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000042861 Kcna10 ENSMUST00000169751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042861 Kcna10 ENSMUST00000055064 ENSMUSP00000088118 TRANSLATION protein_coding - CCDS38587.1 1 511.0 0.0 1.0 17.4 264.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036894 Rap2b ENSMUST00000049064 ENSMUSP00000038841 TRANSLATION protein_coding - CCDS17378.1 - 183.0 24.0 1.0 36.9 189.5 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000028057 Rit1 ENSMUST00000172333 ENSMUSP00000131384 TRANSLATION nonsense_mediated_decay - - 2 37.0 7.0 0.8 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028057 Rit1 ENSMUST00000170377 ENSMUSP00000125858 TRANSLATION nonsense_mediated_decay - - 1 90.0 18.0 2.215 0.0 61.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028057 Rit1 ENSMUST00000029692 ENSMUSP00000029692 TRANSLATION protein_coding - CCDS17484.1 1 219.0 25.0 5.05 17.2 173.9 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000028057 Rit1 ENSMUST00000172252 ENSMUSP00000130464 TRANSLATION protein_coding - CCDS50952.1 3 183.0 18.0 4.25 10.7 148.4 0.0 -4,-5 0.4565 4 12.596 MINOR ENSMUSG00000028057 Rit1 ENSMUST00000171645 ENSMUSP00000127206 TRANSLATION protein_coding stop - 3 109.0 18.0 3.05 0.0 103.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028057 Rit1 ENSMUST00000165846 - NO_TRANSLATION retained_intron ENSMUSG00000028057 Rit1 ENSMUST00000172187 - NO_TRANSLATION retained_intron ENSMUSG00000028057 Rit1 ENSMUST00000166234 - NO_TRANSLATION retained_intron ENSMUSG00000027983 Cyp2u1 ENSMUST00000106337 ENSMUSP00000101944 TRANSLATION protein_coding - CCDS51069.1 1 530.0 34.0 4.0 0.4 417.1 1.0 -3,-1 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000027983 Cyp2u1 ENSMUST00000198606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027983 Cyp2u1 ENSMUST00000200236 ENSMUSP00000142519 TRANSLATION protein_coding - - 1 501.0 30.0 3.1875 0.0 359.7 1.0 -3,-1 0.0082 4 10.266 MINOR ENSMUSG00000027742 Cog6 ENSMUST00000192788 - NO_TRANSLATION retained_intron ENSMUSG00000027742 Cog6 ENSMUST00000193043 - NO_TRANSLATION retained_intron ENSMUSG00000027742 Cog6 ENSMUST00000036665 ENSMUSP00000048603 TRANSLATION protein_coding - CCDS50905.1 1 657.0 0.0 15.75 10.8 697.8 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000027742 Cog6 ENSMUST00000193432 ENSMUSP00000141339 TRANSLATION protein_coding - - 1 625.0 0.0 14.75 0.0 648.0 0.0 -4,-5 0.0321 15 7.014 MINOR ENSMUSG00000027742 Cog6 ENSMUST00000195183 ENSMUSP00000141733 TRANSLATION protein_coding stop - 5 174.0 0.0 3.75 0.0 105.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027742 Cog6 ENSMUST00000194779 - NO_TRANSLATION retained_intron ENSMUSG00000027942 4933434E20Rik ENSMUST00000029552 ENSMUSP00000029552 TRANSLATION protein_coding - CCDS50967.1 1 189.0 0.0 0.0 3.7 258.3 1.0 -3,-5 0.2655 3 6.852 MINOR ENSMUSG00000027942 4933434E20Rik ENSMUST00000159064 ENSMUSP00000124554 TRANSLATION protein_coding - CCDS17520.1 1 253.0 0.0 0.0 13.7 258.3 1.0 -3,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000027942 4933434E20Rik ENSMUST00000162595 - NO_TRANSLATION retained_intron ENSMUSG00000027942 4933434E20Rik ENSMUST00000161918 ENSMUSP00000123740 TRANSLATION nonsense_mediated_decay - - 1 69.0 0.0 0.0 0.0 95.2 1.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000027942 4933434E20Rik ENSMUST00000161874 - NO_TRANSLATION retained_intron ENSMUSG00000027942 4933434E20Rik ENSMUST00000162114 ENSMUSP00000124822 TRANSLATION protein_coding - - 1 199.0 0.0 0.0 0.0 258.3 1.0 -3,-5 0.0373 3 6.0 MINOR ENSMUSG00000027942 4933434E20Rik ENSMUST00000162390 - NO_TRANSLATION retained_intron ENSMUSG00000027942 4933434E20Rik ENSMUST00000068798 ENSMUSP00000066840 TRANSLATION protein_coding - - 5 235.0 0.0 0.0 1.1 139.7 1.0 -3,-5 0.0126 3 0.032 MINOR ENSMUSG00000027942 4933434E20Rik ENSMUST00000159202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027942 4933434E20Rik ENSMUST00000160640 ENSMUSP00000124028 TRANSLATION protein_coding - CCDS17520.1 1 253.0 0.0 0.0 13.7 258.3 1.0 -3,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000043897 Vmn2r2 ENSMUST00000177151 ENSMUSP00000135110 TRANSLATION protein_coding - - 5 908.0 0.0 3.47 0.4 525.1 10.0 4,-1 0.4479 - 8.0 ALTERNATIVE:2 ENSMUSG00000043897 Vmn2r2 ENSMUST00000077958 ENSMUSP00000077109 TRANSLATION protein_coding - CCDS50919.1 5 824.0 0.0 3.14 1.9 522.8 10.0 -4,-5 1.0 - 8.34 PRINCIPAL:2 ENSMUSG00000068749 Psma5 ENSMUST00000129708 ENSMUSP00000143081 TRANSLATION nonsense_mediated_decay start - 2 55.0 0.0 1.25 0.0 28.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068749 Psma5 ENSMUST00000090569 ENSMUSP00000088057 TRANSLATION protein_coding - CCDS17755.1 1 241.0 0.0 7.08 34.9 239.4 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000027810 Eif2a ENSMUST00000137469 - NO_TRANSLATION retained_intron ENSMUSG00000027810 Eif2a ENSMUST00000138827 - NO_TRANSLATION retained_intron ENSMUSG00000027810 Eif2a ENSMUST00000135876 ENSMUSP00000122375 TRANSLATION nonsense_mediated_decay - - 1 60.0 0.0 1.91 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027810 Eif2a ENSMUST00000138848 ENSMUSP00000120901 TRANSLATION protein_coding stop - 5 251.0 0.0 7.0 0.0 53.0 0.0 -4,-6 0.0003 9 -2.0 MINOR ENSMUSG00000027810 Eif2a ENSMUST00000148251 - NO_TRANSLATION retained_intron ENSMUSG00000027810 Eif2a ENSMUST00000029387 ENSMUSP00000029387 TRANSLATION protein_coding - CCDS17367.1 1 581.0 0.0 8.66 6.1 253.9 0.0 -4,-5 1.0 19 14.0 PRINCIPAL:1 ENSMUSG00000027810 Eif2a ENSMUST00000154219 ENSMUSP00000121236 TRANSLATION nonsense_mediated_decay - - 5 59.0 0.0 1.91 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033900 Map9 ENSMUST00000195471 ENSMUSP00000141282 TRANSLATION protein_coding stop - 5 517.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0047 6 -2.0 MINOR ENSMUSG00000033900 Map9 ENSMUST00000193559 ENSMUSP00000142014 TRANSLATION protein_coding stop - 1 538.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0062 6 -2.0 MINOR ENSMUSG00000033900 Map9 ENSMUST00000192595 ENSMUSP00000141828 TRANSLATION protein_coding stop - 1 357.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 4 -2.0 MINOR ENSMUSG00000033900 Map9 ENSMUST00000091014 ENSMUSP00000088535 TRANSLATION protein_coding - CCDS38461.1 5 646.0 0.0 0.0 2.9 25.1 0.0 -4,-5 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000033900 Map9 ENSMUST00000194622 - NO_TRANSLATION retained_intron ENSMUSG00000033900 Map9 ENSMUST00000195793 ENSMUSP00000141231 TRANSLATION protein_coding start/stop - 5 92.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0003 1 -2.0 MINOR ENSMUSG00000033900 Map9 ENSMUST00000195640 ENSMUSP00000142206 TRANSLATION protein_coding - CCDS38461.1 1 646.0 0.0 0.0 2.9 25.1 0.0 -4,-5 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000014603 Alx3 ENSMUST00000233202 ENSMUSP00000156514 TRANSLATION protein_coding stop - - 131.0 0.0 1.96 0.0 84.0 0.0 -4,-7 0.0152 - -2.0 MINOR ENSMUSG00000014603 Alx3 ENSMUST00000014747 ENSMUSP00000014747 TRANSLATION protein_coding - CCDS17739.1 1 343.0 0.0 1.8 12.5 84.0 0.0 -4,-5 1.0 - 14.508 PRINCIPAL:1 ENSMUSG00000104445 Rhbg ENSMUST00000171887 ENSMUSP00000130767 TRANSLATION protein_coding - CCDS17466.1 1 455.0 5.0 9.2 5.8 241.4 0.0 2,-3 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000037062 Sh3glb1 ENSMUST00000198254 ENSMUSP00000143312 TRANSLATION protein_coding - CCDS80043.1 1 386.0 0.0 8.85 14.6 288.3 0.0 -4,-5 0.8743 9 13.584 MINOR ENSMUSG00000037062 Sh3glb1 ENSMUST00000199531 ENSMUSP00000143433 TRANSLATION protein_coding - CCDS80042.1 1 355.0 0.0 8.85 0.1 279.7 0.0 -4,-5 0.1461 8 10.584 MINOR ENSMUSG00000037062 Sh3glb1 ENSMUST00000163279 ENSMUSP00000129800 TRANSLATION protein_coding - CCDS17885.1 1 365.0 0.0 9.18 22.9 292.3 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000037062 Sh3glb1 ENSMUST00000199350 ENSMUSP00000143031 TRANSLATION protein_coding start - 3 140.0 0.0 3.25 0.0 57.2 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000037062 Sh3glb1 ENSMUST00000199854 ENSMUSP00000142716 TRANSLATION protein_coding - - 5 394.0 0.0 9.18 8.4 284.2 0.0 -4,-5 0.3345 9 12.866 MINOR ENSMUSG00000037062 Sh3glb1 ENSMUST00000200532 ENSMUSP00000142626 TRANSLATION protein_coding start/stop - 3 194.0 0.0 3.27 0.0 95.2 0.0 -4,-5 0.0001 3 -2.0 MINOR ENSMUSG00000045092 S1pr1 ENSMUST00000055676 ENSMUSP00000050897 TRANSLATION protein_coding - CCDS17781.1 1 382.0 0.0 1.0 16.2 142.0 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028159 Dapp1 ENSMUST00000199541 - NO_TRANSLATION retained_intron ENSMUSG00000028159 Dapp1 ENSMUST00000154716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028159 Dapp1 ENSMUST00000136613 ENSMUSP00000119634 TRANSLATION protein_coding - CCDS80029.1 1 239.0 8.0 4.9 0.9 62.3 0.0 -4,-5 0.0105 5 11.844 MINOR ENSMUSG00000028159 Dapp1 ENSMUST00000124827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028159 Dapp1 ENSMUST00000184222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028159 Dapp1 ENSMUST00000200596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028159 Dapp1 ENSMUST00000029806 ENSMUSP00000029806 TRANSLATION protein_coding - CCDS17864.1 1 280.0 8.0 5.9 11.0 131.6 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000027894 Slc6a17 ENSMUST00000029499 ENSMUSP00000029499 TRANSLATION protein_coding - CCDS38591.1 1 724.0 8.0 11.35 25.6 743.5 12.0 -4,-6 0.9886 14 15.812 ALTERNATIVE:1 ENSMUSG00000027894 Slc6a17 ENSMUST00000166892 ENSMUSP00000129588 TRANSLATION protein_coding stop - 2 116.0 5.0 1.75 0.0 106.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000027894 Slc6a17 ENSMUST00000170429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027894 Slc6a17 ENSMUST00000169449 ENSMUSP00000129379 TRANSLATION protein_coding - CCDS79998.1 1 727.0 8.0 11.35 26.8 743.1 12.0 -4,-6 1.0 14 16.0 PRINCIPAL:4 ENSMUSG00000027894 Slc6a17 ENSMUST00000169413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027894 Slc6a17 ENSMUST00000171029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027894 Slc6a17 ENSMUST00000168211 ENSMUSP00000131888 TRANSLATION nonsense_mediated_decay start - 1 686.0 8.0 11.35 0.0 743.1 12.0 -4,-5 0.1115 12 -2.0 MINOR ENSMUSG00000027894 Slc6a17 ENSMUST00000166736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027894 Slc6a17 ENSMUST00000167898 - NO_TRANSLATION retained_intron ENSMUSG00000027894 Slc6a17 ENSMUST00000167975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042035 Igsf3 ENSMUST00000198995 - NO_TRANSLATION retained_intron ENSMUSG00000042035 Igsf3 ENSMUST00000195164 ENSMUSP00000141823 TRANSLATION protein_coding - - 5 1214.0 0.0 1.452 8.0 160.2 1.0 4,-1 0.9654 24 11.0 ALTERNATIVE:1 ENSMUSG00000042035 Igsf3 ENSMUST00000043983 ENSMUSP00000048900 TRANSLATION protein_coding - CCDS17682.1 1 1194.0 0.0 1.452 6.1 160.2 1.0 4,-1 1.0 24 10.187 PRINCIPAL:4 ENSMUSG00000078664 Sprr2a1 ENSMUST00000074449 ENSMUSP00000083330 TRANSLATION protein_coding - CCDS17548.1 1 83.0 0.0 0.0 0.0 34.3 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000102308 Sprr5 ENSMUST00000193521 ENSMUSP00000141296 TRANSLATION protein_coding - - 1 87.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5648 - 0.0 PRINCIPAL:1 ENSMUSG00000092607 Scnm1 ENSMUST00000173462 ENSMUSP00000133769 TRANSLATION protein_coding - CCDS50986.1 2 164.0 4.0 2.85 0.7 121.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000092607 Scnm1 ENSMUST00000174835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000092607 Scnm1 ENSMUST00000173527 - NO_TRANSLATION retained_intron ENSMUSG00000092607 Scnm1 ENSMUST00000174508 - NO_TRANSLATION retained_intron ENSMUSG00000092607 Scnm1 ENSMUST00000172572 ENSMUSP00000134337 TRANSLATION protein_coding - CCDS50987.1 1 186.0 4.0 2.85 0.0 56.2 0.0 -4,-5 0.1318 2 12.112 MINOR ENSMUSG00000092607 Scnm1 ENSMUST00000174859 - NO_TRANSLATION retained_intron ENSMUSG00000092607 Scnm1 ENSMUST00000196728 - NO_TRANSLATION retained_intron ENSMUSG00000092607 Scnm1 ENSMUST00000199730 - NO_TRANSLATION retained_intron ENSMUSG00000105103 Gm43191 ENSMUST00000140672 ENSMUSP00000114952 TRANSLATION protein_coding,RT start/stop - 3 235.0 0.0 1.732 0.0 171.9 0.0 -2,-6 0.7601 - -2.0 PRINCIPAL:1 ENSMUSG00000054942 Miga1 ENSMUST00000199334 ENSMUSP00000143238 TRANSLATION protein_coding - - 1 506.0 0.0 4.6 0.0 638.0 2.0 -4,-6 0.0097 6 1.998 MINOR ENSMUSG00000054942 Miga1 ENSMUST00000196265 ENSMUSP00000142667 TRANSLATION nonsense_mediated_decay - - 3 153.0 0.0 0.0 0.0 70.3 2.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000054942 Miga1 ENSMUST00000200241 - NO_TRANSLATION retained_intron ENSMUSG00000054942 Miga1 ENSMUST00000199872 - NO_TRANSLATION retained_intron ENSMUSG00000054942 Miga1 ENSMUST00000068243 ENSMUSP00000068261 TRANSLATION protein_coding - CCDS51096.1 1 536.0 0.0 5.25 3.2 472.4 2.0 -4,-6 0.1503 9 3.888 MINOR ENSMUSG00000054942 Miga1 ENSMUST00000199963 - NO_TRANSLATION retained_intron ENSMUSG00000054942 Miga1 ENSMUST00000073089 ENSMUSP00000072836 TRANSLATION protein_coding - CCDS17916.1 1 600.0 0.0 6.6 12.2 804.4 2.0 -4,-6 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000054942 Miga1 ENSMUST00000199443 ENSMUSP00000143643 TRANSLATION protein_coding start - 3 124.0 0.0 0.6 0.0 101.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054942 Miga1 ENSMUST00000199397 ENSMUSP00000143008 TRANSLATION protein_coding - - 1 158.0 0.0 0.0 0.0 70.9 3.0 -4,-6 0.0007 3 0.0 MINOR ENSMUSG00000027999 Pla2g12a ENSMUST00000061165 ENSMUSP00000053651 TRANSLATION protein_coding - CCDS17837.1 1 153.0 2.0 0.0 0.0 217.4 0.0 -4,-5 0.037 1 3.122 MINOR ENSMUSG00000027999 Pla2g12a ENSMUST00000196838 ENSMUSP00000143771 TRANSLATION nonsense_mediated_decay start - 3 129.0 2.0 0.0 0.0 213.6 0.0 -4,-5 0.0015 1 -2.0 MINOR ENSMUSG00000027999 Pla2g12a ENSMUST00000029629 ENSMUSP00000029629 TRANSLATION protein_coding - CCDS17836.1 1 192.0 2.0 0.0 0.0 298.7 0.0 4,-1 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000027999 Pla2g12a ENSMUST00000196736 - NO_TRANSLATION retained_intron ENSMUSG00000062232 Rapgef2 ENSMUST00000195708 ENSMUSP00000141542 TRANSLATION protein_coding - - 5 1644.0 0.0 6.1 0.0 303.4 0.0 -4,-5 0.2563 30 12.0 MINOR ENSMUSG00000062232 Rapgef2 ENSMUST00000118340 ENSMUSP00000113778 TRANSLATION protein_coding - CCDS50932.1 1 1494.0 0.0 6.1 4.7 303.4 0.0 -4,-7 1.0 29 13.422 MINOR ENSMUSG00000062232 Rapgef2 ENSMUST00000124647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062232 Rapgef2 ENSMUST00000152275 - NO_TRANSLATION retained_intron ENSMUSG00000062232 Rapgef2 ENSMUST00000118100 ENSMUSP00000114119 TRANSLATION protein_coding - - 1 1496.0 0.0 6.1 8.8 303.4 0.0 -4,-5 0.946 29 15.0 PRINCIPAL:1 ENSMUSG00000062232 Rapgef2 ENSMUST00000136126 - NO_TRANSLATION retained_intron ENSMUSG00000027599 Armc1 ENSMUST00000029125 ENSMUSP00000029125 TRANSLATION protein_coding - CCDS17255.1 1 282.0 0.0 0.0 15.7 21.9 0.0 -4,-5 1.0 12 10.0 PRINCIPAL:1 ENSMUSG00000027908 Tchhl1 ENSMUST00000029516 ENSMUSP00000029516 TRANSLATION protein_coding - CCDS17582.1 1 638.0 3.0 1.0 0.0 50.6 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000040896 Kcnd3 ENSMUST00000079169 ENSMUSP00000078169 TRANSLATION protein_coding - CCDS17709.1 1 655.0 0.0 2.0 21.1 443.8 5.0 0,-5 0.9435 11 11.334 PRINCIPAL:3 ENSMUSG00000040896 Kcnd3 ENSMUST00000098761 ENSMUSP00000096357 TRANSLATION protein_coding - CCDS17708.1 1 636.0 0.0 2.0 18.7 449.2 5.0 0,-5 1.0 10 11.524 ALTERNATIVE:1 ENSMUSG00000040896 Kcnd3 ENSMUST00000147209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040896 Kcnd3 ENSMUST00000118360 ENSMUSP00000113436 TRANSLATION protein_coding - CCDS17709.1 5 655.0 0.0 2.0 21.1 443.8 5.0 0,-5 0.9435 11 11.334 PRINCIPAL:3 ENSMUSG00000040896 Kcnd3 ENSMUST00000141694 - NO_TRANSLATION retained_intron ENSMUSG00000037610 Kcnmb2 ENSMUST00000192429 ENSMUSP00000141656 TRANSLATION protein_coding - CCDS17292.1 5 235.0 0.0 4.0 22.2 347.1 3.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037610 Kcnmb2 ENSMUST00000119310 ENSMUSP00000112531 TRANSLATION protein_coding - CCDS17292.1 1 235.0 0.0 4.0 22.2 347.1 3.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037610 Kcnmb2 ENSMUST00000194796 ENSMUSP00000141858 TRANSLATION protein_coding - - 1 36.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000037610 Kcnmb2 ENSMUST00000191869 ENSMUSP00000141955 TRANSLATION protein_coding - - 5 181.0 0.0 3.0 0.0 243.6 2.0 -4,-2 0.0012 - 4.002 MINOR ENSMUSG00000037610 Kcnmb2 ENSMUST00000119970 ENSMUSP00000113234 TRANSLATION protein_coding - CCDS17292.1 1 235.0 0.0 4.0 22.2 347.1 3.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027676 Ccdc39 ENSMUST00000200277 - NO_TRANSLATION retained_intron ENSMUSG00000027676 Ccdc39 ENSMUST00000200300 - NO_TRANSLATION retained_intron ENSMUSG00000027676 Ccdc39 ENSMUST00000197230 - NO_TRANSLATION retained_intron ENSMUSG00000027676 Ccdc39 ENSMUST00000200551 - NO_TRANSLATION retained_intron ENSMUSG00000027676 Ccdc39 ENSMUST00000200536 - NO_TRANSLATION retained_intron ENSMUSG00000027676 Ccdc39 ENSMUST00000029222 ENSMUSP00000029222 TRANSLATION protein_coding - CCDS17304.1 1 937.0 0.0 0.0 2.3 0.0 0.0 -4,-5 1.0 15 1.0 PRINCIPAL:1 ENSMUSG00000027667 Zfp639 ENSMUST00000193119 ENSMUSP00000142244 TRANSLATION protein_coding stop - 3 113.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0107 2 -2.0 MINOR ENSMUSG00000027667 Zfp639 ENSMUST00000194126 - NO_TRANSLATION retained_intron ENSMUSG00000027667 Zfp639 ENSMUST00000029203 ENSMUSP00000029203 TRANSLATION protein_coding - CCDS17295.1 1 485.0 24.0 1.6 12.3 0.0 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000027667 Zfp639 ENSMUST00000193789 ENSMUSP00000142029 TRANSLATION protein_coding start - 5 152.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0088 1 -2.0 MINOR ENSMUSG00000027667 Zfp639 ENSMUST00000194821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027667 Zfp639 ENSMUST00000193287 ENSMUSP00000141341 TRANSLATION protein_coding - CCDS17295.1 1 485.0 24.0 1.6 12.3 0.0 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000027667 Zfp639 ENSMUST00000192985 ENSMUSP00000141559 TRANSLATION protein_coding stop - 5 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0076 1 -2.0 MINOR ENSMUSG00000027667 Zfp639 ENSMUST00000193290 - NO_TRANSLATION retained_intron ENSMUSG00000027667 Zfp639 ENSMUST00000191783 ENSMUSP00000141446 TRANSLATION protein_coding - CCDS17295.1 1 485.0 24.0 1.6 12.3 0.0 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000043529 Or11i1 ENSMUST00000213616 ENSMUSP00000149899 TRANSLATION protein_coding - CCDS17729.1 5 316.0 0.0 1.0 7.4 197.2 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043529 Or11i1 ENSMUST00000216610 ENSMUSP00000150519 TRANSLATION protein_coding - CCDS17729.1 5 316.0 0.0 1.0 7.4 197.2 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043529 Or11i1 ENSMUST00000059486 ENSMUSP00000054070 TRANSLATION protein_coding - CCDS17729.1 - 316.0 0.0 1.0 7.4 197.2 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044365 Cxxc4 ENSMUST00000181904 ENSMUSP00000138000 TRANSLATION protein_coding - CCDS17851.2 5 366.0 8.0 0.0 0.4 30.9 0.0 -4,-5 0.9937 1 12.0 PRINCIPAL:1 ENSMUSG00000044365 Cxxc4 ENSMUST00000197151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044365 Cxxc4 ENSMUST00000199134 - NO_TRANSLATION retained_intron ENSMUSG00000044365 Cxxc4 ENSMUST00000181597 - NO_TRANSLATION retained_intron ENSMUSG00000036832 Lpar3 ENSMUST00000039164 ENSMUSP00000037712 TRANSLATION protein_coding - CCDS17901.1 1 354.0 0.0 1.0 18.7 125.0 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027530 Fabp12 ENSMUST00000117917 ENSMUSP00000112464 TRANSLATION protein_coding - CCDS17239.1 1 132.0 19.0 3.25 29.5 82.6 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000027530 Fabp12 ENSMUST00000119761 ENSMUSP00000112958 TRANSLATION protein_coding - CCDS17239.1 3 132.0 19.0 3.25 29.5 82.6 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000027530 Fabp12 ENSMUST00000172126 ENSMUSP00000131101 TRANSLATION protein_coding - CCDS17239.1 1 132.0 19.0 3.25 29.5 82.6 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000027530 Fabp12 ENSMUST00000029043 ENSMUSP00000029043 TRANSLATION protein_coding - CCDS17239.1 1 132.0 19.0 3.25 29.5 82.6 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000048458 Inka2 ENSMUST00000066610 ENSMUSP00000069212 TRANSLATION protein_coding - CCDS17710.1 1 300.0 0.0 0.5 3.9 99.6 0.0 -4,-5 1.0 1 13.094 PRINCIPAL:1 ENSMUSG00000048458 Inka2 ENSMUST00000098273 ENSMUSP00000095874 TRANSLATION protein_coding - CCDS51035.1 1 281.0 0.0 0.0 6.3 99.6 0.0 -4,-5 0.9523 1 8.0 MINOR ENSMUSG00000027778 Ift80 ENSMUST00000154741 ENSMUSP00000118406 TRANSLATION protein_coding stop - 5 209.0 0.0 4.05 0.0 12.5 0.0 -4,-5 0.0039 5 -2.0 MINOR ENSMUSG00000027778 Ift80 ENSMUST00000152502 - NO_TRANSLATION retained_intron ENSMUSG00000027778 Ift80 ENSMUST00000107812 ENSMUSP00000103442 TRANSLATION protein_coding - CCDS38451.1 5 777.0 0.0 11.2 13.0 12.5 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000027778 Ift80 ENSMUST00000136176 - NO_TRANSLATION retained_intron ENSMUSG00000027778 Ift80 ENSMUST00000176135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027778 Ift80 ENSMUST00000029347 ENSMUSP00000029347 TRANSLATION protein_coding - CCDS38451.1 5 777.0 0.0 11.2 13.0 12.5 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000027778 Ift80 ENSMUST00000176189 - NO_TRANSLATION retained_intron ENSMUSG00000027778 Ift80 ENSMUST00000136448 - NO_TRANSLATION retained_intron ENSMUSG00000027778 Ift80 ENSMUST00000148031 ENSMUSP00000122919 TRANSLATION protein_coding stop - 5 158.0 0.0 2.68 0.0 12.5 0.0 -4,-5 0.0047 4 -2.0 MINOR ENSMUSG00000027778 Ift80 ENSMUST00000176754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027778 Ift80 ENSMUST00000192467 - NO_TRANSLATION retained_intron ENSMUSG00000027716 Trpc3 ENSMUST00000146475 - NO_TRANSLATION retained_intron ENSMUSG00000027716 Trpc3 ENSMUST00000133542 - NO_TRANSLATION retained_intron ENSMUSG00000027716 Trpc3 ENSMUST00000029271 ENSMUSP00000029271 TRANSLATION protein_coding - CCDS50893.1 1 910.0 0.0 8.96 0.4 229.8 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000027716 Trpc3 ENSMUST00000129322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027716 Trpc3 ENSMUST00000123220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041423 Paqr6 ENSMUST00000149640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041423 Paqr6 ENSMUST00000147991 ENSMUSP00000114166 TRANSLATION protein_coding - CCDS17471.1 1 343.0 0.0 6.5 12.9 164.5 7.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000041423 Paqr6 ENSMUST00000147818 - NO_TRANSLATION retained_intron ENSMUSG00000041423 Paqr6 ENSMUST00000147948 ENSMUSP00000119656 TRANSLATION protein_coding - CCDS79941.1 2 233.0 0.0 4.5 1.0 65.6 3.0 -4,-2 0.0343 2 2.064 MINOR ENSMUSG00000041423 Paqr6 ENSMUST00000123200 - NO_TRANSLATION retained_intron ENSMUSG00000027832 Ptx3 ENSMUST00000182521 - NO_TRANSLATION retained_intron ENSMUSG00000027832 Ptx3 ENSMUST00000029421 ENSMUSP00000029421 TRANSLATION protein_coding - CCDS17392.1 1 381.0 0.0 1.0 7.4 94.3 0.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000034544 Rsrc1 ENSMUST00000182708 - NO_TRANSLATION retained_intron ENSMUSG00000034544 Rsrc1 ENSMUST00000162036 ENSMUSP00000125468 TRANSLATION protein_coding - CCDS17394.1 5 334.0 0.0 2.15 4.3 0.0 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000034544 Rsrc1 ENSMUST00000162693 ENSMUSP00000125547 TRANSLATION protein_coding - - 1 281.0 0.0 2.15 0.0 0.0 0.0 -4,-5 0.0328 2 6.0 MINOR ENSMUSG00000034544 Rsrc1 ENSMUST00000162362 ENSMUSP00000123699 TRANSLATION protein_coding stop - 5 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0118 - -2.0 MINOR ENSMUSG00000034544 Rsrc1 ENSMUST00000162620 - NO_TRANSLATION retained_intron ENSMUSG00000034544 Rsrc1 ENSMUST00000046542 ENSMUSP00000047077 TRANSLATION protein_coding - - 1 292.0 0.0 2.15 0.0 0.0 0.0 -4,-5 0.033 4 6.0 MINOR ENSMUSG00000034544 Rsrc1 ENSMUST00000065074 ENSMUSP00000066797 TRANSLATION protein_coding - CCDS17394.1 1 334.0 0.0 2.15 4.3 0.0 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000034544 Rsrc1 ENSMUST00000065047 ENSMUSP00000066967 TRANSLATION protein_coding - - 1 213.0 0.0 2.15 0.0 0.0 0.0 -4,-5 0.0318 2 6.0 MINOR ENSMUSG00000034544 Rsrc1 ENSMUST00000160504 ENSMUSP00000124925 TRANSLATION protein_coding stop - 3 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0118 - -2.0 MINOR ENSMUSG00000034544 Rsrc1 ENSMUST00000161726 ENSMUSP00000124347 TRANSLATION protein_coding - CCDS17394.1 1 334.0 0.0 2.15 4.3 0.0 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000068745 Mybphl ENSMUST00000090563 ENSMUSP00000088051 TRANSLATION protein_coding - CCDS17757.1 1 355.0 0.0 5.05 6.6 144.2 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000027931 Npr1 ENSMUST00000029540 ENSMUSP00000029540 TRANSLATION protein_coding - CCDS17529.1 1 1057.0 0.0 14.925 0.1 552.1 1.0 4,-3 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000027931 Npr1 ENSMUST00000152510 - NO_TRANSLATION retained_intron ENSMUSG00000027931 Npr1 ENSMUST00000124760 ENSMUSP00000118023 TRANSLATION nonsense_mediated_decay start - 5 51.0 0.0 0.4 0.0 0.0 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000027931 Npr1 ENSMUST00000142243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027931 Npr1 ENSMUST00000146991 - NO_TRANSLATION retained_intron ENSMUSG00000028186 Uox ENSMUST00000121133 ENSMUSP00000113649 TRANSLATION protein_coding - - 5 199.0 0.0 4.198 0.0 117.9 0.0 -4,-5 0.0 10 1.146 MINOR ENSMUSG00000028186 Uox ENSMUST00000138921 - NO_TRANSLATION retained_intron ENSMUSG00000028186 Uox ENSMUST00000197320 - NO_TRANSLATION retained_intron ENSMUSG00000028186 Uox ENSMUST00000199489 ENSMUSP00000143418 TRANSLATION protein_coding stop - 3 228.0 0.0 5.0 0.0 156.4 0.0 -4,-5 0.0003 13 -2.0 MINOR ENSMUSG00000028186 Uox ENSMUST00000029837 ENSMUSP00000029837 TRANSLATION protein_coding - CCDS17905.1 1 303.0 0.0 7.198 13.2 198.8 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000028186 Uox ENSMUST00000147409 ENSMUSP00000143299 TRANSLATION protein_coding stop - 3 73.0 0.0 1.5 0.0 34.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000028016 Ints12 ENSMUST00000160036 - NO_TRANSLATION retained_intron ENSMUSG00000028016 Ints12 ENSMUST00000160669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028016 Ints12 ENSMUST00000029650 ENSMUSP00000029650 TRANSLATION protein_coding - CCDS17848.1 1 461.0 8.0 1.5 0.0 38.2 0.0 -4,-7 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000001025 S100a6 ENSMUST00000001051 ENSMUSP00000001051 TRANSLATION protein_coding - CCDS38506.1 1 89.0 12.0 2.0 13.6 63.8 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000001025 S100a6 ENSMUST00000197189 - NO_TRANSLATION retained_intron ENSMUSG00000001025 S100a6 ENSMUST00000198128 ENSMUSP00000143111 TRANSLATION protein_coding - CCDS38506.1 3 89.0 12.0 2.0 13.6 63.8 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000001025 S100a6 ENSMUST00000200289 ENSMUSP00000143720 TRANSLATION nonsense_mediated_decay - CCDS38506.1 3 89.0 12.0 2.0 13.6 63.8 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000040269 Mrps28 ENSMUST00000042148 ENSMUSP00000038305 TRANSLATION protein_coding - CCDS17233.1 1 186.0 0.0 2.5 9.1 183.4 0.0 -4,0 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000104043 Gm6525 ENSMUST00000193882 ENSMUSP00000141377 TRANSLATION protein_coding - - - 106.0 2.0 1.0 36.9 122.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028194 Ddah1 ENSMUST00000120310 ENSMUSP00000112747 TRANSLATION protein_coding - - 1 182.0 9.0 4.75 15.3 0.0 0.0 -4,-5 0.5708 16 9.122 MINOR ENSMUSG00000028194 Ddah1 ENSMUST00000029845 ENSMUSP00000029845 TRANSLATION protein_coding - CCDS17896.1 1 285.0 14.0 5.75 24.3 0.0 0.0 -4,0 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000028194 Ddah1 ENSMUST00000127193 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015702 Anxa9 ENSMUST00000015846 ENSMUSP00000015846 TRANSLATION protein_coding - CCDS50989.1 1 345.0 3.0 8.298 11.6 206.1 0.0 -4,-6 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000015702 Anxa9 ENSMUST00000123365 ENSMUSP00000121913 TRANSLATION protein_coding stop - 3 33.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015702 Anxa9 ENSMUST00000107183 ENSMUSP00000102801 TRANSLATION protein_coding - CCDS50989.1 1 345.0 3.0 8.298 11.6 206.1 0.0 -4,-6 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000027954 Efna1 ENSMUST00000118860 ENSMUSP00000113098 TRANSLATION protein_coding - - 5 183.0 0.0 3.0 0.0 143.3 2.0 1,-2 0.0343 1 10.314 MINOR ENSMUSG00000027954 Efna1 ENSMUST00000118587 ENSMUSP00000112904 TRANSLATION protein_coding - CCDS50961.1 1 142.0 0.0 1.95 1.1 76.8 2.0 -4,-5 0.0138 1 5.224 MINOR ENSMUSG00000027954 Efna1 ENSMUST00000029566 ENSMUSP00000029566 TRANSLATION protein_coding - CCDS17501.1 1 205.0 0.0 3.75 1.1 146.4 2.0 1,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000032902 Slc16a1 ENSMUST00000046212 ENSMUSP00000045216 TRANSLATION protein_coding - CCDS17702.1 1 493.0 0.0 3.0 18.9 110.6 0.0 -3,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000027790 Sis ENSMUST00000094190 ENSMUSP00000091742 TRANSLATION protein_coding - CCDS38454.1 2 1818.0 4.0 41.88 1.4 1325.3 1.0 0,-5 1.0 58 17.0 PRINCIPAL:1 ENSMUSG00000027790 Sis ENSMUST00000170445 - NO_TRANSLATION retained_intron ENSMUSG00000027790 Sis ENSMUST00000167334 ENSMUSP00000129116 TRANSLATION protein_coding - CCDS38454.1 1 1818.0 4.0 41.88 1.4 1325.3 1.0 0,-5 1.0 58 17.0 PRINCIPAL:1 ENSMUSG00000027790 Sis ENSMUST00000191870 - NO_TRANSLATION retained_intron ENSMUSG00000027555 Car13 ENSMUST00000029071 ENSMUSP00000029071 TRANSLATION protein_coding - CCDS17247.1 1 262.0 3.0 6.25 26.8 314.6 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000039795 Zfand1 ENSMUST00000156414 - NO_TRANSLATION retained_intron ENSMUSG00000039795 Zfand1 ENSMUST00000127313 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039795 Zfand1 ENSMUST00000184644 ENSMUSP00000139317 TRANSLATION nonsense_mediated_decay - - 3 49.0 2.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039795 Zfand1 ENSMUST00000140634 ENSMUSP00000122048 TRANSLATION protein_coding start/stop - 5 247.0 15.0 3.16 0.0 86.4 0.0 -4,-7 0.0042 4 -2.0 MINOR ENSMUSG00000039795 Zfand1 ENSMUST00000037839 ENSMUSP00000037459 TRANSLATION protein_coding - CCDS17242.1 1 268.0 17.0 3.66 27.0 93.5 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000039795 Zfand1 ENSMUST00000125734 - NO_TRANSLATION retained_intron ENSMUSG00000039795 Zfand1 ENSMUST00000108377 ENSMUSP00000104014 TRANSLATION protein_coding - - 1 207.0 17.0 3.66 0.0 93.5 0.0 -4,-5 0.0187 1 18.0 MINOR ENSMUSG00000039795 Zfand1 ENSMUST00000183798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056306 Sertm1 ENSMUST00000162201 ENSMUSP00000124102 TRANSLATION protein_coding - CCDS17355.1 1 107.0 0.0 0.0 21.6 184.6 1.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000056306 Sertm1 ENSMUST00000070342 ENSMUSP00000064870 TRANSLATION protein_coding - CCDS17355.1 1 107.0 0.0 0.0 21.6 184.6 1.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000011463 Cpb1 ENSMUST00000137855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011463 Cpb1 ENSMUST00000125945 - NO_TRANSLATION retained_intron ENSMUSG00000011463 Cpb1 ENSMUST00000011607 ENSMUSP00000011607 TRANSLATION protein_coding - CCDS17263.1 1 415.0 8.0 9.8 28.7 384.0 0.0 2,-1 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000008763 Man1a2 ENSMUST00000008907 ENSMUSP00000008907 TRANSLATION protein_coding - CCDS17676.1 1 641.0 0.0 11.4 35.7 512.0 2.0 -4,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000008763 Man1a2 ENSMUST00000196250 ENSMUSP00000143695 TRANSLATION nonsense_mediated_decay - - 5 122.0 0.0 0.0 0.0 0.0 2.0 -4,0 0.0017 - -2.0 MINOR ENSMUSG00000008763 Man1a2 ENSMUST00000146818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008763 Man1a2 ENSMUST00000123442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008763 Man1a2 ENSMUST00000133642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008763 Man1a2 ENSMUST00000130066 ENSMUSP00000116489 TRANSLATION protein_coding start/stop - 3 246.0 0.0 4.65 0.0 137.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000103124 Gm37389 ENSMUST00000194885 ENSMUSP00000141340 TRANSLATION nonsense_mediated_decay,RT - - 1 95.0 0.0 2.0 0.0 51.7 0.0 -4,-7 0.7396 - -2.0 PRINCIPAL:1 ENSMUSG00000027879 Sec22b ENSMUST00000029476 ENSMUSP00000029476 TRANSLATION protein_coding - CCDS17658.1 1 215.0 0.0 3.35 36.9 149.5 0.0 -2,-7 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000027879 Sec22b ENSMUST00000130620 ENSMUSP00000142976 TRANSLATION protein_coding - - 2 62.0 0.0 1.75 0.0 0.0 0.0 -3,-7 0.0 2 2.802 MINOR ENSMUSG00000027879 Sec22b ENSMUST00000130778 ENSMUSP00000117579 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.75 0.0 0.0 0.0 -3,-7 0.0 - -2.0 MINOR ENSMUSG00000027879 Sec22b ENSMUST00000122288 ENSMUSP00000113502 TRANSLATION protein_coding - - 1 166.0 0.0 3.15 0.0 92.5 0.0 -2,-7 0.0054 8 8.178 MINOR ENSMUSG00000027879 Sec22b ENSMUST00000199738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028004 Npy2r ENSMUST00000098997 ENSMUSP00000096595 TRANSLATION protein_coding - CCDS59646.1 1 381.0 0.0 2.16 15.0 176.0 9.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028004 Npy2r ENSMUST00000182181 ENSMUSP00000138559 TRANSLATION protein_coding - CCDS57219.1 1 268.0 0.0 1.16 0.7 93.0 6.0 -4,-5 0.0204 1 4.242 MINOR ENSMUSG00000028004 Npy2r ENSMUST00000182831 ENSMUSP00000138282 TRANSLATION protein_coding - CCDS59646.1 1 381.0 0.0 2.16 15.0 176.0 9.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028004 Npy2r ENSMUST00000029633 ENSMUSP00000029633 TRANSLATION protein_coding - CCDS59646.1 2 381.0 0.0 2.16 15.0 176.0 9.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000037625 Cldn11 ENSMUST00000046174 ENSMUSP00000042181 TRANSLATION protein_coding - CCDS17290.1 1 207.0 0.0 3.0 31.9 72.3 0.0 -2,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000068879 Gm5773 ENSMUST00000090853 ENSMUSP00000088366 TRANSLATION protein_coding - - - 364.0 0.0 0.64 3.4 127.6 0.0 -4,-5 0.8496 - 13.0 PRINCIPAL:1 ENSMUSG00000001018 Snapin ENSMUST00000107352 - NO_TRANSLATION retained_intron ENSMUSG00000001018 Snapin ENSMUST00000185005 ENSMUSP00000139160 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000001018 Snapin ENSMUST00000149884 ENSMUSP00000122090 TRANSLATION protein_coding - CCDS17531.1 1 136.0 0.0 3.66 0.0 96.5 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000001018 Snapin ENSMUST00000184877 ENSMUSP00000139315 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0004 - -2.0 MINOR ENSMUSG00000001018 Snapin ENSMUST00000107351 - NO_TRANSLATION retained_intron ENSMUSG00000058921 Slc10a5 ENSMUST00000078748 ENSMUSP00000077808 TRANSLATION protein_coding - CCDS17241.1 - 434.0 0.0 1.0 0.4 110.6 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000074344 Tmigd3 ENSMUST00000198080 ENSMUSP00000143300 TRANSLATION protein_coding - CCDS38582.1 5 209.0 0.0 1.0 3.4 0.0 1.0 4,-1 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000074344 Tmigd3 ENSMUST00000199107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074344 Tmigd3 ENSMUST00000010279 ENSMUSP00000010279 TRANSLATION protein_coding - CCDS38582.1 1 209.0 0.0 1.0 3.4 0.0 1.0 4,-1 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000074344 Tmigd3 ENSMUST00000197907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074344 Tmigd3 ENSMUST00000200482 ENSMUSP00000142695 TRANSLATION nonsense_mediated_decay - - 5 131.0 0.0 1.0 0.0 0.0 0.0 4,-1 0.1172 - -2.0 MINOR ENSMUSG00000074344 Tmigd3 ENSMUST00000199977 ENSMUSP00000142671 TRANSLATION protein_coding - - 1 206.0 0.0 1.0 2.7 0.0 1.0 4,-1 0.6872 - 6.708 ALTERNATIVE:2 ENSMUSG00000015711 Prune1 ENSMUST00000148959 - NO_TRANSLATION retained_intron ENSMUSG00000015711 Prune1 ENSMUST00000015855 ENSMUSP00000015855 TRANSLATION protein_coding - CCDS17610.1 1 454.0 9.0 7.3 9.4 102.2 0.0 -4,-6 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000027714 Exosc9 ENSMUST00000138636 - NO_TRANSLATION retained_intron ENSMUSG00000027714 Exosc9 ENSMUST00000029269 ENSMUSP00000029269 TRANSLATION protein_coding - CCDS17312.1 1 438.0 0.0 9.74 8.4 128.5 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000027714 Exosc9 ENSMUST00000136890 ENSMUSP00000121047 TRANSLATION protein_coding stop - 3 147.0 0.0 3.83 0.0 83.9 0.0 -4,-6 0.0004 1 -2.0 MINOR ENSMUSG00000027714 Exosc9 ENSMUST00000156100 ENSMUSP00000143326 TRANSLATION protein_coding start - 5 132.0 0.0 3.91 0.0 36.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000027714 Exosc9 ENSMUST00000155866 ENSMUSP00000122189 TRANSLATION nonsense_mediated_decay - - 5 242.0 0.0 7.16 0.0 121.0 0.0 -4,-5 0.0022 4 -2.0 MINOR ENSMUSG00000027714 Exosc9 ENSMUST00000133854 - NO_TRANSLATION retained_intron ENSMUSG00000027714 Exosc9 ENSMUST00000131316 ENSMUSP00000117235 TRANSLATION protein_coding start - 2 112.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027714 Exosc9 ENSMUST00000149041 - NO_TRANSLATION retained_intron ENSMUSG00000015747 Vps45 ENSMUST00000015891 ENSMUSP00000015891 TRANSLATION protein_coding - CCDS17628.1 1 570.0 0.0 10.04 31.9 441.0 0.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000015747 Vps45 ENSMUST00000131281 - NO_TRANSLATION retained_intron ENSMUSG00000015747 Vps45 ENSMUST00000140518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027935 Rab13 ENSMUST00000065418 ENSMUSP00000070588 TRANSLATION protein_coding - CCDS17522.1 1 202.0 23.0 5.65 0.0 222.8 0.0 -4,-7 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000027935 Rab13 ENSMUST00000198809 - NO_TRANSLATION retained_intron ENSMUSG00000027935 Rab13 ENSMUST00000107373 ENSMUSP00000102996 TRANSLATION protein_coding - CCDS79962.1 1 121.0 9.0 3.15 4.0 101.9 0.0 -4,-5 0.6659 2 3.002 MINOR ENSMUSG00000028012 Rrh ENSMUST00000196317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028012 Rrh ENSMUST00000197535 ENSMUSP00000143245 TRANSLATION nonsense_mediated_decay start - 3 130.0 1.0 2.0 0.0 49.4 4.0 -4,-7 0.0065 - -2.0 MINOR ENSMUSG00000028012 Rrh ENSMUST00000196902 ENSMUSP00000143093 TRANSLATION protein_coding - CCDS38633.1 1 337.0 16.0 7.265 0.8 150.3 13.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028012 Rrh ENSMUST00000029648 ENSMUSP00000029648 TRANSLATION protein_coding - - 1 379.0 16.0 7.265 0.0 130.9 13.0 -4,-7 0.0795 - 16.836 MINOR ENSMUSG00000028012 Rrh ENSMUST00000197295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028012 Rrh ENSMUST00000200079 ENSMUSP00000143054 TRANSLATION protein_coding - - 1 240.0 11.0 5.265 0.1 62.3 8.0 -4,-7 0.006 - 5.382 MINOR ENSMUSG00000028012 Rrh ENSMUST00000171313 ENSMUSP00000132360 TRANSLATION protein_coding - CCDS38633.1 1 337.0 16.0 7.265 0.8 150.3 13.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028012 Rrh ENSMUST00000196281 - NO_TRANSLATION retained_intron ENSMUSG00000027782 Kpna4 ENSMUST00000029353 ENSMUSP00000029353 TRANSLATION protein_coding - - 1 623.0 0.0 12.36 0.0 465.8 0.0 -2,-5 0.0586 13 12.0 MINOR ENSMUSG00000027782 Kpna4 ENSMUST00000127497 ENSMUSP00000121076 TRANSLATION protein_coding stop - 5 111.0 0.0 2.96 0.0 89.9 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000027782 Kpna4 ENSMUST00000194558 ENSMUSP00000141227 TRANSLATION protein_coding - CCDS17403.1 1 521.0 0.0 12.36 31.0 465.8 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000039286 Fndc3b ENSMUST00000046157 ENSMUSP00000041495 TRANSLATION protein_coding - CCDS17274.1 1 1207.0 0.0 13.106 13.6 234.9 1.0 -4,-7 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000039286 Fndc3b ENSMUST00000191684 - NO_TRANSLATION retained_intron ENSMUSG00000039286 Fndc3b ENSMUST00000193779 ENSMUSP00000141888 TRANSLATION protein_coding stop - 2 119.0 0.0 1.1 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000039286 Fndc3b ENSMUST00000195008 ENSMUSP00000141620 TRANSLATION protein_coding - CCDS17274.1 1 1207.0 0.0 13.106 13.6 234.9 1.0 -4,-7 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000037661 Gpr160 ENSMUST00000108258 ENSMUSP00000103893 TRANSLATION protein_coding - CCDS50883.1 1 336.0 0.0 0.0 9.9 0.0 5.0 -4,-5 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000037661 Gpr160 ENSMUST00000108259 ENSMUSP00000103894 TRANSLATION protein_coding - CCDS50883.1 3 336.0 0.0 0.0 9.9 0.0 5.0 -4,-5 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000037661 Gpr160 ENSMUST00000194979 ENSMUSP00000142310 TRANSLATION protein_coding stop - 3 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0471 - -2.0 MINOR ENSMUSG00000037661 Gpr160 ENSMUST00000166278 ENSMUSP00000128666 TRANSLATION protein_coding - CCDS50883.1 1 336.0 0.0 0.0 9.9 0.0 5.0 -4,-5 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000037661 Gpr160 ENSMUST00000130294 - NO_TRANSLATION retained_intron ENSMUSG00000037661 Gpr160 ENSMUST00000046748 ENSMUSP00000045165 TRANSLATION protein_coding - CCDS50883.1 1 336.0 0.0 0.0 9.9 0.0 5.0 -4,-5 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000037661 Gpr160 ENSMUST00000108261 ENSMUSP00000103896 TRANSLATION protein_coding - CCDS50883.1 1 336.0 0.0 0.0 9.9 0.0 5.0 -4,-5 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000037661 Gpr160 ENSMUST00000147697 ENSMUSP00000121542 TRANSLATION protein_coding stop - 5 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0188 - -2.0 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000195929 ENSMUSP00000143757 TRANSLATION protein_coding stop - 5 104.0 2.0 2.816 0.0 36.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000199869 - NO_TRANSLATION retained_intron ENSMUSG00000028107 Tars2 ENSMUST00000200376 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028107 Tars2 ENSMUST00000198194 - NO_TRANSLATION retained_intron ENSMUSG00000028107 Tars2 ENSMUST00000197501 ENSMUSP00000143270 TRANSLATION protein_coding stop - 3 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0071 - -2.0 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000198007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028107 Tars2 ENSMUST00000098857 ENSMUSP00000096456 TRANSLATION protein_coding - CCDS50995.1 1 423.0 5.0 9.68 0.0 92.1 0.0 -4,0 0.0083 12 0.0 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000197895 - NO_TRANSLATION retained_intron ENSMUSG00000028107 Tars2 ENSMUST00000196475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028107 Tars2 ENSMUST00000196868 ENSMUSP00000143033 TRANSLATION protein_coding stop - 3 43.0 2.0 1.25 0.0 40.5 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000074339 ENSMUSP00000073946 TRANSLATION protein_coding - CCDS50996.1 1 697.0 21.0 15.63 0.0 259.3 0.0 -4,0 0.0951 18 15.438 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000196077 ENSMUSP00000143722 TRANSLATION nonsense_mediated_decay start - 1 264.0 4.0 5.35 0.0 89.0 0.0 -4,0 0.0004 8 -2.0 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000199464 ENSMUSP00000143328 TRANSLATION nonsense_mediated_decay - - 1 177.0 0.0 2.1 0.0 49.8 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000163530 ENSMUSP00000130269 TRANSLATION protein_coding - CCDS50994.1 1 642.0 20.0 14.38 0.1 265.9 0.0 -4,0 0.0962 15 12.666 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000198289 ENSMUSP00000143271 TRANSLATION protein_coding stop - 5 142.0 2.0 4.33 0.0 36.3 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000199570 ENSMUSP00000143038 TRANSLATION protein_coding stop - 2 209.0 2.0 4.18 0.0 92.1 0.0 -4,0 0.0 7 -2.0 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000197389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028107 Tars2 ENSMUST00000197720 ENSMUSP00000143295 TRANSLATION nonsense_mediated_decay - - 3 79.0 0.0 0.6 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000028107 Tars2 ENSMUST00000029752 ENSMUSP00000029752 TRANSLATION protein_coding - CCDS38548.1 1 723.0 22.0 16.38 8.3 265.9 0.0 -4,0 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000044468 Tent5c ENSMUST00000061455 ENSMUSP00000056872 TRANSLATION protein_coding - CCDS51017.1 1 391.0 0.0 1.0 26.9 526.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000044468 Tent5c ENSMUST00000128107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044468 Tent5c ENSMUST00000139833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027951 Adar ENSMUST00000121094 ENSMUSP00000112969 TRANSLATION protein_coding - - 1 634.0 20.0 6.245 0.0 424.0 0.0 -4,-5 0.0007 14 8.598 MINOR ENSMUSG00000027951 Adar ENSMUST00000123691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027951 Adar ENSMUST00000131030 - NO_TRANSLATION retained_intron ENSMUSG00000027951 Adar ENSMUST00000150637 - NO_TRANSLATION retained_intron ENSMUSG00000027951 Adar ENSMUST00000098924 ENSMUSP00000096525 TRANSLATION protein_coding - CCDS17514.1 1 930.0 20.0 6.995 5.3 545.4 0.0 -4,-5 0.635 20 12.596 MINOR ENSMUSG00000027951 Adar ENSMUST00000118341 ENSMUSP00000113453 TRANSLATION protein_coding - - 1 660.0 20.0 5.495 0.0 424.0 0.0 -4,-5 0.0007 15 7.098 MINOR ENSMUSG00000027951 Adar ENSMUST00000197253 - NO_TRANSLATION retained_intron ENSMUSG00000027951 Adar ENSMUST00000107405 ENSMUSP00000103028 TRANSLATION protein_coding - CCDS50963.1 1 1178.0 20.0 7.195 0.4 637.1 0.0 -4,-7 0.4822 22 16.5 MINOR ENSMUSG00000027951 Adar ENSMUST00000029563 ENSMUSP00000029563 TRANSLATION protein_coding - CCDS17513.1 1 1152.0 20.0 7.945 0.4 637.1 0.0 -4,-7 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000015750 Aph1a ENSMUST00000197232 - NO_TRANSLATION retained_intron ENSMUSG00000015750 Aph1a ENSMUST00000015894 ENSMUSP00000015894 TRANSLATION protein_coding - CCDS17624.1 1 247.0 0.0 6.25 5.5 312.5 7.0 -2,-5 0.4375 - 12.68 MINOR ENSMUSG00000015750 Aph1a ENSMUST00000056710 ENSMUSP00000058846 TRANSLATION protein_coding - CCDS50999.1 1 265.0 0.0 6.4 19.4 312.5 7.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000015750 Aph1a ENSMUST00000197081 ENSMUSP00000142972 TRANSLATION protein_coding stop - 5 49.0 0.0 1.0 0.0 50.5 1.0 0,-3 0.0028 - -2.0 MINOR ENSMUSG00000091648 C2cd4d ENSMUST00000169433 ENSMUSP00000128182 TRANSLATION protein_coding - CCDS50983.1 3 341.0 0.0 0.2 0.4 29.0 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091648 C2cd4d ENSMUST00000197526 - NO_TRANSLATION retained_intron ENSMUSG00000033767 Tmem131l ENSMUST00000192811 - NO_TRANSLATION retained_intron ENSMUSG00000033767 Tmem131l ENSMUST00000194993 - NO_TRANSLATION retained_intron ENSMUSG00000033767 Tmem131l ENSMUST00000193696 - NO_TRANSLATION retained_intron ENSMUSG00000033767 Tmem131l ENSMUST00000195245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033767 Tmem131l ENSMUST00000192095 ENSMUSP00000141607 TRANSLATION protein_coding - - 1 1534.0 0.0 0.0 0.1 60.7 1.0 -1,1 0.902 10 2.0 ALTERNATIVE:2 ENSMUSG00000033767 Tmem131l ENSMUST00000194432 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033767 Tmem131l ENSMUST00000194522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033767 Tmem131l ENSMUST00000192283 - NO_TRANSLATION retained_intron ENSMUSG00000033767 Tmem131l ENSMUST00000052342 ENSMUSP00000049808 TRANSLATION protein_coding - - 5 1535.0 0.0 0.0 0.1 60.7 1.0 -1,1 0.8995 10 2.0 ALTERNATIVE:2 ENSMUSG00000033767 Tmem131l ENSMUST00000191758 ENSMUSP00000141438 TRANSLATION protein_coding - CCDS38463.1 1 1597.0 0.0 0.0 0.1 60.7 1.0 -1,1 0.6867 11 2.0 PRINCIPAL:3 ENSMUSG00000033767 Tmem131l ENSMUST00000199411 - NO_TRANSLATION retained_intron ENSMUSG00000050064 Zfp697 ENSMUST00000056096 ENSMUSP00000056979 TRANSLATION protein_coding - CCDS38564.1 1 569.0 44.0 0.6 0.1 217.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000050064 Zfp697 ENSMUST00000196741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050064 Zfp697 ENSMUST00000196194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045662 Henmt1 ENSMUST00000059946 ENSMUSP00000054829 TRANSLATION protein_coding - CCDS38602.1 1 395.0 19.0 5.23 1.4 0.0 0.0 -4,-5 0.8252 - 12.736 PRINCIPAL:2 ENSMUSG00000045662 Henmt1 ENSMUST00000196400 ENSMUSP00000143561 TRANSLATION nonsense_mediated_decay - - 1 98.0 18.0 2.0 0.0 0.0 0.0 -4,-5 0.0163 - -2.0 MINOR ENSMUSG00000045662 Henmt1 ENSMUST00000106586 ENSMUSP00000102196 TRANSLATION protein_coding - CCDS38602.1 1 395.0 19.0 5.23 1.4 0.0 0.0 -4,-5 0.8252 - 12.736 PRINCIPAL:2 ENSMUSG00000045662 Henmt1 ENSMUST00000196533 ENSMUSP00000143574 TRANSLATION protein_coding - - 1 352.0 19.0 4.23 0.0 0.0 0.0 -4,-6 0.0396 - 9.738 MINOR ENSMUSG00000045662 Henmt1 ENSMUST00000098680 ENSMUSP00000096277 TRANSLATION protein_coding - - 1 262.0 19.0 5.362 0.0 0.0 0.0 -4,-5 0.0635 - 12.0 ALTERNATIVE:2 ENSMUSG00000045662 Henmt1 ENSMUST00000197427 ENSMUSP00000143304 TRANSLATION protein_coding stop - 5 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.041 - -2.0 MINOR ENSMUSG00000074677 Sirpb1c ENSMUST00000191802 - NO_TRANSLATION retained_intron ENSMUSG00000074677 Sirpb1c ENSMUST00000050623 ENSMUSP00000061216 TRANSLATION protein_coding - CCDS50868.1 1 391.0 0.0 3.5 0.3 147.2 0.0 1,-3 0.7557 - 8.0 ALTERNATIVE:2 ENSMUSG00000074677 Sirpb1c ENSMUST00000108354 ENSMUSP00000103991 TRANSLATION protein_coding - - 1 362.0 0.0 3.5 0.0 147.2 0.0 1,-3 0.1727 - 8.0 ALTERNATIVE:2 ENSMUSG00000074677 Sirpb1c ENSMUST00000108352 ENSMUSP00000103989 TRANSLATION protein_coding - - 1 397.0 0.0 3.5 0.3 147.2 0.0 1,-3 0.8468 - 8.0 PRINCIPAL:4 ENSMUSG00000074677 Sirpb1c ENSMUST00000108350 ENSMUSP00000103987 TRANSLATION protein_coding - - 1 391.0 0.0 3.5 0.0 147.2 0.0 1,-3 0.3132 - 8.0 ALTERNATIVE:2 ENSMUSG00000074677 Sirpb1c ENSMUST00000108349 ENSMUSP00000103986 TRANSLATION protein_coding - - 1 389.0 0.0 3.5 0.0 147.2 0.0 1,-3 0.2777 - 8.0 ALTERNATIVE:2 ENSMUSG00000074677 Sirpb1c ENSMUST00000124067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074677 Sirpb1c ENSMUST00000148194 ENSMUSP00000120527 TRANSLATION protein_coding start - 5 237.0 0.0 2.5 0.0 88.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000051000 Fhip1a ENSMUST00000126445 - NO_TRANSLATION retained_intron ENSMUSG00000051000 Fhip1a ENSMUST00000118408 ENSMUSP00000113235 TRANSLATION protein_coding - CCDS17442.2 5 1081.0 0.0 0.0 0.0 320.9 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000051000 Fhip1a ENSMUST00000094148 ENSMUSP00000091700 TRANSLATION protein_coding - CCDS17442.2 5 1081.0 0.0 0.0 0.0 320.9 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000051000 Fhip1a ENSMUST00000119077 ENSMUSP00000112705 TRANSLATION nonsense_mediated_decay - - 5 226.0 0.0 0.0 0.0 153.7 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000044313 Mab21l3 ENSMUST00000061831 ENSMUSP00000059212 TRANSLATION protein_coding - CCDS17684.1 1 429.0 0.0 5.0 1.8 272.2 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000044313 Mab21l3 ENSMUST00000118411 ENSMUSP00000112730 TRANSLATION protein_coding - CCDS17684.1 1 429.0 0.0 5.0 1.8 272.2 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000028031 Dkk2 ENSMUST00000029665 ENSMUSP00000029665 TRANSLATION protein_coding - CCDS17844.1 1 259.0 0.0 1.64 11.6 60.8 0.0 1,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000041355 Ssr2 ENSMUST00000192495 ENSMUSP00000141922 TRANSLATION protein_coding - - 5 185.0 0.0 4.7 1.9 208.5 1.0 4,-1 0.1647 1 9.972 MINOR ENSMUSG00000041355 Ssr2 ENSMUST00000194604 ENSMUSP00000141591 TRANSLATION protein_coding stop - 3 32.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0027 - -2.0 MINOR ENSMUSG00000041355 Ssr2 ENSMUST00000193069 ENSMUSP00000141389 TRANSLATION protein_coding stop - 3 34.0 0.0 0.6 0.0 0.0 0.0 4,-1 0.0033 - -2.0 MINOR ENSMUSG00000041355 Ssr2 ENSMUST00000193934 ENSMUSP00000141325 TRANSLATION protein_coding - - 3 164.0 0.0 4.35 0.0 97.5 1.0 4,-1 0.0075 1 4.68 MINOR ENSMUSG00000041355 Ssr2 ENSMUST00000195014 ENSMUSP00000141441 TRANSLATION protein_coding - CCDS17480.1 1 183.0 0.0 5.01 18.7 235.4 1.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000041355 Ssr2 ENSMUST00000035785 ENSMUSP00000045456 TRANSLATION protein_coding - CCDS17480.1 1 183.0 0.0 5.01 18.7 235.4 1.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000041355 Ssr2 ENSMUST00000192688 ENSMUSP00000141471 TRANSLATION protein_coding stop - 3 117.0 0.0 3.26 0.0 158.5 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000004885 Crabp2 ENSMUST00000163040 - NO_TRANSLATION retained_intron ENSMUSG00000004885 Crabp2 ENSMUST00000005019 ENSMUSP00000005019 TRANSLATION protein_coding - CCDS17460.1 1 138.0 21.0 3.25 36.9 86.4 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000019710 Mrpl24 ENSMUST00000137775 ENSMUSP00000142071 TRANSLATION protein_coding stop - 2 62.0 0.0 1.0 0.0 0.0 0.0 0,4 0.0004 1 -2.0 MINOR ENSMUSG00000019710 Mrpl24 ENSMUST00000152287 - NO_TRANSLATION retained_intron ENSMUSG00000019710 Mrpl24 ENSMUST00000019854 ENSMUSP00000019854 TRANSLATION protein_coding - CCDS38477.1 1 216.0 0.0 5.0 32.9 79.2 0.0 0,4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000019710 Mrpl24 ENSMUST00000121048 ENSMUSP00000113959 TRANSLATION protein_coding - CCDS38477.1 1 216.0 0.0 5.0 32.9 79.2 0.0 0,4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000019710 Mrpl24 ENSMUST00000119968 ENSMUSP00000114111 TRANSLATION protein_coding - CCDS38477.1 1 216.0 0.0 5.0 32.9 79.2 0.0 0,4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000019710 Mrpl24 ENSMUST00000121920 ENSMUSP00000112885 TRANSLATION protein_coding - CCDS38477.1 1 216.0 0.0 5.0 32.9 79.2 0.0 0,4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000027957 Slc35a3 ENSMUST00000120120 ENSMUSP00000112674 TRANSLATION protein_coding - CCDS17791.1 1 326.0 0.0 5.6 36.2 461.4 11.0 0,-4 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000027957 Slc35a3 ENSMUST00000169530 ENSMUSP00000127284 TRANSLATION protein_coding stop - 5 202.0 0.0 0.48 0.0 61.8 4.0 -4,-2 0.0037 4 -2.0 MINOR ENSMUSG00000027957 Slc35a3 ENSMUST00000153108 ENSMUSP00000123641 TRANSLATION protein_coding stop - 3 212.0 0.0 3.32 0.0 311.5 7.0 0,-4 0.02 3 -2.0 MINOR ENSMUSG00000027957 Slc35a3 ENSMUST00000029569 ENSMUSP00000029569 TRANSLATION protein_coding - CCDS17791.1 1 326.0 0.0 5.6 36.2 461.4 11.0 0,-4 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000027957 Slc35a3 ENSMUST00000196331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027957 Slc35a3 ENSMUST00000196335 ENSMUSP00000142374 TRANSLATION protein_coding stop - 3 167.0 0.0 2.58 0.0 231.8 6.0 0,-4 0.0033 3 -2.0 MINOR ENSMUSG00000027957 Slc35a3 ENSMUST00000131082 - NO_TRANSLATION retained_intron ENSMUSG00000027950 Chrnb2 ENSMUST00000199372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027950 Chrnb2 ENSMUST00000200558 ENSMUSP00000143441 TRANSLATION protein_coding - - 1 727.0 0.0 3.5 0.0 465.2 4.0 4,-1 0.0145 3 6.534 MINOR ENSMUSG00000027950 Chrnb2 ENSMUST00000029562 ENSMUSP00000029562 TRANSLATION protein_coding - CCDS17515.1 1 501.0 0.0 4.3 7.1 529.6 5.0 4,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000043873 Chil5 ENSMUST00000066537 ENSMUSP00000065043 TRANSLATION protein_coding start - 2 251.0 2.0 4.33 0.0 96.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000043873 Chil5 ENSMUST00000054973 ENSMUSP00000052345 TRANSLATION nonsense_mediated_decay start - 1 96.0 2.0 1.53 0.0 52.8 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000043873 Chil5 ENSMUST00000200146 ENSMUSP00000142477 TRANSLATION protein_coding - CCDS38584.1 5 431.0 2.0 7.99 0.0 285.0 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051431 Gpr87 ENSMUST00000200095 ENSMUSP00000143683 TRANSLATION protein_coding - CCDS79914.1 1 358.0 0.0 0.5 14.4 124.5 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000051431 Gpr87 ENSMUST00000199833 - NO_TRANSLATION retained_intron ENSMUSG00000051431 Gpr87 ENSMUST00000056898 ENSMUSP00000059272 TRANSLATION protein_coding - - - 359.0 0.0 0.5 0.0 124.5 7.0 -4,-6 0.2085 - 12.0 MINOR ENSMUSG00000027913 Crct1 ENSMUST00000029521 ENSMUSP00000029521 TRANSLATION protein_coding - CCDS17578.1 1 102.0 0.0 0.0 0.0 111.5 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027913 Crct1 ENSMUST00000107301 ENSMUSP00000102922 TRANSLATION protein_coding - CCDS17578.1 2 102.0 0.0 0.0 0.0 111.5 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027788 Otol1 ENSMUST00000053013 ENSMUSP00000057607 TRANSLATION protein_coding - CCDS17409.1 1 482.0 0.0 -0.325 6.0 172.3 0.0 1,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000028161 Ppp3ca ENSMUST00000056758 ENSMUSP00000053101 TRANSLATION protein_coding - CCDS17860.1 1 521.0 10.0 10.1 22.5 133.7 0.0 -4,-5 0.9968 11 18.0 PRINCIPAL:3 ENSMUSG00000028161 Ppp3ca ENSMUST00000196603 - NO_TRANSLATION retained_intron ENSMUSG00000028161 Ppp3ca ENSMUST00000124206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028161 Ppp3ca ENSMUST00000070198 ENSMUSP00000071040 TRANSLATION protein_coding - CCDS80027.1 1 511.0 10.0 10.1 21.5 133.7 0.0 -4,-5 1.0 9 17.812 ALTERNATIVE:1 ENSMUSG00000028161 Ppp3ca ENSMUST00000130114 - NO_TRANSLATION retained_intron ENSMUSG00000028161 Ppp3ca ENSMUST00000196170 - NO_TRANSLATION retained_intron ENSMUSG00000028161 Ppp3ca ENSMUST00000124777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028161 Ppp3ca ENSMUST00000130768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074238 Ap1ar ENSMUST00000051737 ENSMUSP00000059669 TRANSLATION protein_coding - CCDS38629.1 3 298.0 0.0 2.5 15.6 492.8 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074238 Ap1ar ENSMUST00000198626 - NO_TRANSLATION retained_intron ENSMUSG00000074238 Ap1ar ENSMUST00000196687 - NO_TRANSLATION retained_intron ENSMUSG00000074238 Ap1ar ENSMUST00000200238 - NO_TRANSLATION retained_intron ENSMUSG00000074238 Ap1ar ENSMUST00000200409 ENSMUSP00000143466 TRANSLATION protein_coding - CCDS84673.1 5 265.0 0.0 1.5 10.7 288.6 0.0 -4,-2 0.5546 - 6.256 MINOR ENSMUSG00000074238 Ap1ar ENSMUST00000197450 - NO_TRANSLATION retained_intron ENSMUSG00000074238 Ap1ar ENSMUST00000197471 - NO_TRANSLATION retained_intron ENSMUSG00000074238 Ap1ar ENSMUST00000197744 - NO_TRANSLATION retained_intron ENSMUSG00000074238 Ap1ar ENSMUST00000196392 ENSMUSP00000142961 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000074238 Ap1ar ENSMUST00000199901 - NO_TRANSLATION retained_intron ENSMUSG00000040998 Npnt ENSMUST00000117456 ENSMUSP00000112816 TRANSLATION protein_coding - CCDS71321.1 1 457.0 16.0 4.063 2.4 156.4 0.0 -4,-6 0.2279 7 6.422 MINOR ENSMUSG00000040998 Npnt ENSMUST00000042744 ENSMUSP00000040684 TRANSLATION protein_coding - CCDS17845.1 1 561.0 21.0 5.963 1.0 184.5 0.0 4,-1 0.5023 10 12.962 ALTERNATIVE:2 ENSMUSG00000040998 Npnt ENSMUST00000117164 ENSMUSP00000113419 TRANSLATION protein_coding - CCDS71322.1 1 592.0 21.0 6.283 0.0 184.5 0.0 4,-1 0.4574 10 13.598 ALTERNATIVE:2 ENSMUSG00000040998 Npnt ENSMUST00000093971 ENSMUSP00000091505 TRANSLATION protein_coding - CCDS71323.1 1 609.0 21.0 6.483 1.0 184.5 0.0 4,-1 1.0 9 14.0 PRINCIPAL:2 ENSMUSG00000040998 Npnt ENSMUST00000132732 - NO_TRANSLATION retained_intron ENSMUSG00000040998 Npnt ENSMUST00000117811 ENSMUSP00000113752 TRANSLATION protein_coding - - 5 532.0 21.0 5.888 0.0 184.5 0.0 4,-1 0.122 9 12.812 MINOR ENSMUSG00000040998 Npnt ENSMUST00000042729 ENSMUSP00000040071 TRANSLATION protein_coding - CCDS17846.1 1 578.0 21.0 6.163 1.0 184.5 0.0 4,-1 0.5802 9 13.358 ALTERNATIVE:2 ENSMUSG00000087119 Atg4a-ps ENSMUST00000117271 ENSMUSP00000143291 TRANSLATION protein_coding - - - 396.0 0.0 0.8 7.7 332.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027720 Il2 ENSMUST00000029275 ENSMUSP00000029275 TRANSLATION protein_coding - CCDS17316.1 1 169.0 0.0 3.25 0.0 246.7 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000068696 Gpr88 ENSMUST00000090473 ENSMUSP00000087959 TRANSLATION protein_coding - CCDS38610.1 1 384.0 0.0 0.16 3.1 55.0 0.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000068696 Gpr88 ENSMUST00000197759 ENSMUSP00000143586 TRANSLATION protein_coding stop - 3 32.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000068696 Gpr88 ENSMUST00000199128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068739 Sars ENSMUST00000197647 - NO_TRANSLATION retained_intron ENSMUSG00000068739 Sars ENSMUST00000102625 ENSMUSP00000099685 TRANSLATION protein_coding - CCDS17760.1 1 536.0 17.0 11.05 4.0 206.3 0.0 -4,-5 0.1468 23 15.174 MINOR ENSMUSG00000068739 Sars ENSMUST00000090553 ENSMUSP00000088041 TRANSLATION protein_coding - CCDS57254.1 1 512.0 17.0 11.8 33.2 234.6 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000068739 Sars ENSMUST00000132467 ENSMUSP00000120879 TRANSLATION protein_coding stop - 5 352.0 14.0 8.5 0.0 192.8 0.0 -4,-5 0.0 15 -2.0 MINOR ENSMUSG00000068739 Sars ENSMUST00000153499 ENSMUSP00000118676 TRANSLATION protein_coding stop - 5 186.0 1.0 3.7 0.0 72.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000028066 Pmf1 ENSMUST00000056370 ENSMUSP00000062420 TRANSLATION protein_coding - CCDS38481.1 1 202.0 0.0 4.5 8.5 77.8 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000028066 Pmf1 ENSMUST00000198774 - NO_TRANSLATION retained_intron ENSMUSG00000028066 Pmf1 ENSMUST00000195899 - NO_TRANSLATION retained_intron ENSMUSG00000028066 Pmf1 ENSMUST00000191622 - NO_TRANSLATION retained_intron ENSMUSG00000028066 Pmf1 ENSMUST00000192909 ENSMUSP00000141229 TRANSLATION nonsense_mediated_decay start - 3 81.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028066 Pmf1 ENSMUST00000192365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028066 Pmf1 ENSMUST00000193338 ENSMUSP00000141696 TRANSLATION protein_coding - CCDS79942.1 1 133.0 0.0 2.5 1.1 25.3 0.0 -4,-5 0.0041 4 3.987 MINOR ENSMUSG00000027805 Pfn2 ENSMUST00000122210 ENSMUSP00000113526 TRANSLATION protein_coding - - 3 91.0 0.0 2.0 0.0 48.2 0.0 -4,-5 0.0 6 6.99 MINOR ENSMUSG00000027805 Pfn2 ENSMUST00000066882 ENSMUSP00000068890 TRANSLATION protein_coding - CCDS17364.1 1 140.0 0.0 3.0 32.6 96.8 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000027805 Pfn2 ENSMUST00000120289 ENSMUSP00000112443 TRANSLATION protein_coding - - 2 110.0 0.0 2.0 0.0 67.1 0.0 -4,-5 0.0 4 8.16 MINOR ENSMUSG00000027805 Pfn2 ENSMUST00000119344 ENSMUSP00000112391 TRANSLATION protein_coding - - 1 91.0 0.0 2.0 0.0 48.2 0.0 -4,-5 0.0 6 6.99 MINOR ENSMUSG00000027993 Trim2 ENSMUST00000147901 ENSMUSP00000121055 TRANSLATION protein_coding stop - 5 128.0 8.0 0.998 0.0 44.1 0.0 -4,-5 0.0005 3 -2.0 MINOR ENSMUSG00000027993 Trim2 ENSMUST00000122849 ENSMUSP00000120981 TRANSLATION protein_coding stop - 3 213.0 8.0 1.698 0.0 88.5 0.0 -4,-1 0.0004 5 -2.0 MINOR ENSMUSG00000027993 Trim2 ENSMUST00000107693 ENSMUSP00000103321 TRANSLATION protein_coding - CCDS71256.1 1 744.0 8.0 7.808 14.9 329.4 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000027993 Trim2 ENSMUST00000054990 ENSMUSP00000049902 TRANSLATION protein_coding - CCDS71257.1 1 770.0 8.0 7.808 6.3 329.4 0.0 -4,-2 0.7316 24 19.524 MINOR ENSMUSG00000027993 Trim2 ENSMUST00000152953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027993 Trim2 ENSMUST00000136651 - NO_TRANSLATION retained_intron ENSMUSG00000027993 Trim2 ENSMUST00000140568 - NO_TRANSLATION retained_intron ENSMUSG00000027993 Trim2 ENSMUST00000136805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027993 Trim2 ENSMUST00000132283 ENSMUSP00000118888 TRANSLATION protein_coding stop - 3 191.0 8.0 1.738 0.0 88.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027993 Trim2 ENSMUST00000065380 ENSMUSP00000069922 TRANSLATION protein_coding - CCDS71256.1 1 744.0 8.0 7.808 14.9 329.4 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000027993 Trim2 ENSMUST00000107692 ENSMUSP00000103320 TRANSLATION protein_coding - CCDS71256.1 1 744.0 8.0 7.808 14.9 329.4 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000027993 Trim2 ENSMUST00000197845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027993 Trim2 ENSMUST00000156347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027993 Trim2 ENSMUST00000137596 - NO_TRANSLATION retained_intron ENSMUSG00000027993 Trim2 ENSMUST00000140856 - NO_TRANSLATION retained_intron ENSMUSG00000027993 Trim2 ENSMUST00000107691 ENSMUSP00000103319 TRANSLATION protein_coding - CCDS71256.1 1 744.0 8.0 7.808 14.9 329.4 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000027993 Trim2 ENSMUST00000128574 - NO_TRANSLATION retained_intron ENSMUSG00000027993 Trim2 ENSMUST00000107695 ENSMUSP00000103323 TRANSLATION protein_coding - CCDS17437.2 1 761.0 8.0 7.808 8.0 329.4 0.0 -4,-1 0.8545 24 20.016 MINOR ENSMUSG00000027993 Trim2 ENSMUST00000154152 ENSMUSP00000115914 TRANSLATION protein_coding stop - 2 71.0 6.0 0.798 0.0 41.6 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000027665 Pik3ca ENSMUST00000195230 - NO_TRANSLATION retained_intron ENSMUSG00000027665 Pik3ca ENSMUST00000108242 ENSMUSP00000103877 TRANSLATION protein_coding - - 1 946.0 20.0 17.85 2.2 665.8 0.0 -4,-5 0.0988 24 10.138 MINOR ENSMUSG00000027665 Pik3ca ENSMUST00000029201 ENSMUSP00000029201 TRANSLATION protein_coding - CCDS38409.1 1 1068.0 20.0 18.85 36.2 768.1 0.0 -4,-7 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000027665 Pik3ca ENSMUST00000108243 ENSMUSP00000103878 TRANSLATION protein_coding - CCDS38409.1 5 1068.0 20.0 18.85 36.2 768.1 0.0 -4,-7 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000027799 Nbea ENSMUST00000029374 ENSMUSP00000029374 TRANSLATION protein_coding - CCDS50911.1 5 2936.0 0.0 17.27 3.2 1237.1 0.0 -4,-7 1.0 72 13.0 PRINCIPAL:1 ENSMUSG00000027799 Nbea ENSMUST00000199126 - NO_TRANSLATION retained_intron ENSMUSG00000027799 Nbea ENSMUST00000200526 - NO_TRANSLATION retained_intron ENSMUSG00000027799 Nbea ENSMUST00000199803 ENSMUSP00000159179 TRANSLATION protein_coding start - 5 575.0 0.0 5.92 0.0 245.3 0.0 -4,-5 0.0005 18 -2.0 MINOR ENSMUSG00000027799 Nbea ENSMUST00000199535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027799 Nbea ENSMUST00000196612 - NO_TRANSLATION retained_intron ENSMUSG00000027799 Nbea ENSMUST00000197395 - NO_TRANSLATION retained_intron ENSMUSG00000027799 Nbea ENSMUST00000196577 - NO_TRANSLATION retained_intron ENSMUSG00000027799 Nbea ENSMUST00000198259 - NO_TRANSLATION retained_intron ENSMUSG00000027799 Nbea ENSMUST00000198315 - NO_TRANSLATION retained_intron ENSMUSG00000027932 Slc27a3 ENSMUST00000132041 ENSMUSP00000122599 TRANSLATION protein_coding start - 1 633.0 22.0 6.22534 0.0 189.2 1.0 -4,-2 0.0544 7 -2.0 MINOR ENSMUSG00000027932 Slc27a3 ENSMUST00000153978 - NO_TRANSLATION retained_intron ENSMUSG00000027932 Slc27a3 ENSMUST00000127064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027932 Slc27a3 ENSMUST00000029541 ENSMUSP00000029541 TRANSLATION protein_coding - CCDS17527.1 1 667.0 22.0 6.16 0.0 226.9 1.0 2,-2 1.0 8 17.868 PRINCIPAL:1 ENSMUSG00000027932 Slc27a3 ENSMUST00000144572 - NO_TRANSLATION retained_intron ENSMUSG00000027712 Anxa5 ENSMUST00000029266 ENSMUSP00000029266 TRANSLATION protein_coding - CCDS38416.1 1 319.0 22.0 9.33 17.3 314.2 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000027712 Anxa5 ENSMUST00000196097 - NO_TRANSLATION retained_intron ENSMUSG00000027712 Anxa5 ENSMUST00000199478 ENSMUSP00000143650 TRANSLATION protein_coding stop - 3 137.0 14.0 4.0 0.0 122.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000039103 Nexn ENSMUST00000199423 ENSMUSP00000142936 TRANSLATION protein_coding - - 1 671.0 0.0 0.6 10.8 56.9 0.0 -4,-5 0.7759 13 10.94 ALTERNATIVE:1 ENSMUSG00000039103 Nexn ENSMUST00000196504 ENSMUSP00000143180 TRANSLATION protein_coding stop - 2 169.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039103 Nexn ENSMUST00000198404 - NO_TRANSLATION retained_intron ENSMUSG00000039103 Nexn ENSMUST00000046045 ENSMUSP00000037120 TRANSLATION protein_coding - CCDS38673.1 1 607.0 0.0 0.6 11.0 56.9 0.0 -4,-5 1.0 13 11.0 PRINCIPAL:4 ENSMUSG00000039103 Nexn ENSMUST00000199752 - NO_TRANSLATION retained_intron ENSMUSG00000039103 Nexn ENSMUST00000198460 ENSMUSP00000143573 TRANSLATION protein_coding - - 5 593.0 0.0 0.6 0.0 56.9 0.0 -4,-5 0.1115 13 8.0 MINOR ENSMUSG00000039103 Nexn ENSMUST00000199470 ENSMUSP00000143133 TRANSLATION protein_coding - - 5 536.0 0.0 0.6 1.0 56.9 0.0 -4,-5 0.2365 13 8.0 MINOR ENSMUSG00000039103 Nexn ENSMUST00000198750 ENSMUSP00000142574 TRANSLATION protein_coding stop - 5 272.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 4 -2.0 MINOR ENSMUSG00000039103 Nexn ENSMUST00000200589 ENSMUSP00000142559 TRANSLATION protein_coding stop - 5 354.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 6 -2.0 MINOR ENSMUSG00000039103 Nexn ENSMUST00000199685 ENSMUSP00000142569 TRANSLATION protein_coding stop - 5 161.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039103 Nexn ENSMUST00000198734 - NO_TRANSLATION retained_intron ENSMUSG00000039103 Nexn ENSMUST00000199983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039103 Nexn ENSMUST00000196529 ENSMUSP00000143436 TRANSLATION protein_coding start - 1 473.0 0.0 0.6 0.0 56.9 0.0 -4,-5 0.0549 14 -2.0 MINOR ENSMUSG00000039103 Nexn ENSMUST00000196815 ENSMUSP00000142573 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039103 Nexn ENSMUST00000197282 - NO_TRANSLATION retained_intron ENSMUSG00000039103 Nexn ENSMUST00000198648 ENSMUSP00000143294 TRANSLATION protein_coding stop - 1 175.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040016 Ptger3 ENSMUST00000196682 - NO_TRANSLATION retained_intron ENSMUSG00000040016 Ptger3 ENSMUST00000173533 ENSMUSP00000134137 TRANSLATION protein_coding - - 1 366.0 0.0 1.4 0.4 81.8 6.0 -4,-7 0.8123 2 6.0 PRINCIPAL:4 ENSMUSG00000040016 Ptger3 ENSMUST00000041175 ENSMUSP00000043302 TRANSLATION protein_coding - CCDS17932.1 1 362.0 0.0 1.4 0.1 81.8 6.0 -4,-7 0.7083 2 6.0 ALTERNATIVE:2 ENSMUSG00000049504 Proser1 ENSMUST00000058577 ENSMUSP00000055253 TRANSLATION protein_coding - CCDS17346.1 1 913.0 0.0 4.6 0.4 81.7 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000049504 Proser1 ENSMUST00000198186 - NO_TRANSLATION retained_intron ENSMUSG00000049504 Proser1 ENSMUST00000200328 - NO_TRANSLATION retained_intron ENSMUSG00000049504 Proser1 ENSMUST00000141418 - NO_TRANSLATION retained_intron ENSMUSG00000063600 Egfem1 ENSMUST00000146943 ENSMUSP00000118156 TRANSLATION protein_coding stop - 5 176.0 8.0 1.83 0.0 74.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000063600 Egfem1 ENSMUST00000119598 ENSMUSP00000112943 TRANSLATION protein_coding - CCDS50881.1 1 590.0 17.0 7.2 0.0 193.9 0.0 1,-2 0.4992 - 11.336 MINOR ENSMUSG00000063600 Egfem1 ENSMUST00000143483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063600 Egfem1 ENSMUST00000118531 ENSMUSP00000112907 TRANSLATION protein_coding - CCDS50882.1 1 533.0 21.0 6.73 0.0 176.3 0.0 1,-2 0.5717 - 13.058 PRINCIPAL:1 ENSMUSG00000063600 Egfem1 ENSMUST00000140288 ENSMUSP00000117016 TRANSLATION protein_coding start/stop - 3 244.0 11.0 3.8 0.0 77.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063600 Egfem1 ENSMUST00000126420 - NO_TRANSLATION retained_intron ENSMUSG00000063600 Egfem1 ENSMUST00000124809 ENSMUSP00000114314 TRANSLATION protein_coding stop - 3 125.0 0.0 0.0 0.0 52.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000037922 Bank1 ENSMUST00000041577 ENSMUSP00000035484 TRANSLATION protein_coding - CCDS38645.1 1 783.0 0.0 0.48 4.1 69.4 0.0 -4,-6 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000037922 Bank1 ENSMUST00000198034 - NO_TRANSLATION retained_intron ENSMUSG00000037922 Bank1 ENSMUST00000198206 ENSMUSP00000142996 TRANSLATION protein_coding - - 5 582.0 0.0 0.0 0.0 69.4 0.0 -4,-7 0.0553 5 6.0 MINOR ENSMUSG00000037922 Bank1 ENSMUST00000199902 - NO_TRANSLATION retained_intron ENSMUSG00000037922 Bank1 ENSMUST00000196159 ENSMUSP00000142366 TRANSLATION protein_coding - CCDS80026.1 1 650.0 0.0 0.0 1.0 69.4 0.0 -4,-7 0.2935 5 6.0 MINOR ENSMUSG00000037922 Bank1 ENSMUST00000196131 - NO_TRANSLATION retained_intron ENSMUSG00000054091 1810037I17Rik ENSMUST00000106429 ENSMUSP00000102037 TRANSLATION protein_coding - CCDS38619.1 1 65.0 0.0 0.0 6.6 0.0 0.0 -4,-7 1.0 3 2.0 PRINCIPAL:1 ENSMUSG00000001416 Cct3 ENSMUST00000167000 - NO_TRANSLATION retained_intron ENSMUSG00000001416 Cct3 ENSMUST00000164166 ENSMUSP00000126109 TRANSLATION protein_coding - - 5 507.0 18.0 11.844 2.1 499.8 0.0 -4,-1 0.0493 30 8.566 MINOR ENSMUSG00000001416 Cct3 ENSMUST00000168971 ENSMUSP00000131250 TRANSLATION protein_coding start - 3 85.0 4.0 1.5 0.0 22.4 0.0 -4,-5 0.0001 3 -2.0 MINOR ENSMUSG00000001416 Cct3 ENSMUST00000168062 ENSMUSP00000131113 TRANSLATION protein_coding - - 1 521.0 23.0 12.226 0.0 548.8 0.0 -4,-2 0.0296 28 15.39 MINOR ENSMUSG00000001416 Cct3 ENSMUST00000164783 - NO_TRANSLATION retained_intron ENSMUSG00000001416 Cct3 ENSMUST00000167718 - NO_TRANSLATION retained_intron ENSMUSG00000001416 Cct3 ENSMUST00000193666 - NO_TRANSLATION retained_intron ENSMUSG00000001416 Cct3 ENSMUST00000001452 ENSMUSP00000001452 TRANSLATION protein_coding - CCDS17468.1 1 545.0 23.0 13.094 21.0 563.4 0.0 -4,-2 1.0 31 22.0 PRINCIPAL:1 ENSMUSG00000001416 Cct3 ENSMUST00000164122 - NO_TRANSLATION retained_intron ENSMUSG00000001416 Cct3 ENSMUST00000163735 ENSMUSP00000130616 TRANSLATION protein_coding start/stop - 3 306.0 9.0 6.08 0.0 215.8 0.0 -4,-6 0.0009 17 -2.0 MINOR ENSMUSG00000048581 E130311K13Rik ENSMUST00000061706 ENSMUSP00000058114 TRANSLATION protein_coding - CCDS38445.1 1 294.0 0.0 0.0 3.6 0.0 0.0 -4,-7 0.9338 4 1.0 PRINCIPAL:1 ENSMUSG00000048581 E130311K13Rik ENSMUST00000160983 - NO_TRANSLATION retained_intron ENSMUSG00000048581 E130311K13Rik ENSMUST00000162448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028011 Tdo2 ENSMUST00000029645 ENSMUSP00000029645 TRANSLATION protein_coding - CCDS17427.1 1 406.0 32.0 9.45 16.2 580.1 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000028011 Tdo2 ENSMUST00000137974 - NO_TRANSLATION retained_intron ENSMUSG00000028011 Tdo2 ENSMUST00000193879 ENSMUSP00000141237 TRANSLATION protein_coding - - 1 387.0 32.0 9.45 0.0 580.1 0.0 -4,-5 0.0775 3 18.0 MINOR ENSMUSG00000028011 Tdo2 ENSMUST00000151089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008730 Hipk1 ENSMUST00000126351 - NO_TRANSLATION retained_intron ENSMUSG00000008730 Hipk1 ENSMUST00000029438 ENSMUSP00000029438 TRANSLATION protein_coding - CCDS38576.1 1 1210.0 17.0 5.05 11.8 172.1 0.0 -4,-7 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000008730 Hipk1 ENSMUST00000135634 - NO_TRANSLATION retained_intron ENSMUSG00000008730 Hipk1 ENSMUST00000137078 ENSMUSP00000120396 TRANSLATION nonsense_mediated_decay - - 1 719.0 17.0 5.05 0.0 172.1 0.0 -4,-7 0.0517 2 -2.0 MINOR ENSMUSG00000008730 Hipk1 ENSMUST00000200071 - NO_TRANSLATION retained_intron ENSMUSG00000008730 Hipk1 ENSMUST00000118317 ENSMUSP00000113998 TRANSLATION protein_coding - CCDS38576.1 1 1210.0 17.0 5.05 11.8 172.1 0.0 -4,-7 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000008730 Hipk1 ENSMUST00000106845 ENSMUSP00000102458 TRANSLATION protein_coding - CCDS79992.1 1 1165.0 17.0 5.05 1.0 172.1 0.0 -4,-7 0.4379 6 18.0 MINOR ENSMUSG00000102692 Dchs2 ENSMUST00000191829 ENSMUSP00000141425 TRANSLATION protein_coding - - 5 3346.0 208.0 8.65 0.4 1224.9 0.0 -1,2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036951 Aadacl2fm1 ENSMUST00000049476 ENSMUSP00000047032 TRANSLATION protein_coding - CCDS38441.1 1 280.0 3.0 2.75 0.3 0.0 0.0 -4,-5 0.9614 - 9.0 PRINCIPAL:1 ENSMUSG00000106447 Gm42957 ENSMUST00000137564 ENSMUSP00000121011 TRANSLATION nonsense_mediated_decay,RT - - 2 366.0 0.0 1.398 0.0 180.9 0.0 -4,0 0.7949 - -2.0 PRINCIPAL:1 ENSMUSG00000038619 Ensa ENSMUST00000197050 - NO_TRANSLATION retained_intron ENSMUSG00000038619 Ensa ENSMUST00000199421 - NO_TRANSLATION TEC ENSMUSG00000038619 Ensa ENSMUST00000037983 ENSMUSP00000045937 TRANSLATION protein_coding - CCDS17617.1 1 117.0 1.0 0.0 28.2 35.0 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:4 ENSMUSG00000038619 Ensa ENSMUST00000058230 ENSMUSP00000051799 TRANSLATION protein_coding - CCDS50993.1 1 121.0 1.0 0.0 28.2 35.0 0.0 -4,-5 0.9474 6 6.0 ALTERNATIVE:1 ENSMUSG00000011008 Mcoln2 ENSMUST00000098524 ENSMUSP00000096125 TRANSLATION protein_coding - CCDS38664.1 1 538.0 0.0 11.45 12.2 36.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000011008 Mcoln2 ENSMUST00000169533 - NO_TRANSLATION retained_intron ENSMUSG00000011008 Mcoln2 ENSMUST00000170972 ENSMUSP00000128900 TRANSLATION protein_coding start - 3 113.0 0.0 1.4 0.0 0.0 1.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000011008 Mcoln2 ENSMUST00000011152 ENSMUSP00000011152 TRANSLATION protein_coding - CCDS38663.1 1 566.0 0.0 11.45 4.6 36.9 5.0 -4,-5 0.5106 - 12.963 MINOR ENSMUSG00000011008 Mcoln2 ENSMUST00000169984 - NO_TRANSLATION retained_intron ENSMUSG00000047213 Ythdf3 ENSMUST00000108345 ENSMUSP00000103982 TRANSLATION protein_coding - CCDS50869.1 1 585.0 0.0 0.93 17.0 140.2 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000047213 Ythdf3 ENSMUST00000191774 ENSMUSP00000141610 TRANSLATION protein_coding - - 1 589.0 0.0 0.93 10.3 140.2 0.0 -4,-5 0.7583 9 14.324 MINOR ENSMUSG00000047213 Ythdf3 ENSMUST00000108346 ENSMUSP00000103983 TRANSLATION protein_coding - CCDS38396.1 1 596.0 0.0 0.93 1.1 140.2 0.0 -4,-6 0.4922 9 12.024 MINOR ENSMUSG00000047213 Ythdf3 ENSMUST00000193598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070360 Amy2a1 ENSMUST00000132353 ENSMUSP00000118962 TRANSLATION protein_coding stop - 2 245.0 21.0 4.0 0.0 50.6 0.0 4,-1 0.8401 1 -2.0 PRINCIPAL:1 ENSMUSG00000049013 Prss48 ENSMUST00000061343 ENSMUSP00000051199 TRANSLATION protein_coding - CCDS17444.1 1 312.0 5.0 2.76 0.0 221.1 0.0 3,-1 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000054215 Sprr2k ENSMUST00000067102 ENSMUSP00000063287 TRANSLATION protein_coding - CCDS38512.1 1 68.0 0.0 0.0 0.0 80.9 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000101860 Mindy4b-ps ENSMUST00000191174 - NO_TRANSLATION retained_intron ENSMUSG00000101860 Mindy4b-ps ENSMUST00000191233 ENSMUSP00000151654 TRANSLATION protein_coding - - 5 457.0 0.0 0.0 2.8 434.2 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000101860 Mindy4b-ps ENSMUST00000212169 ENSMUSP00000151582 TRANSLATION protein_coding start - 5 295.0 0.0 0.0 0.0 273.7 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000068744 Psrc1 ENSMUST00000090561 ENSMUSP00000088049 TRANSLATION protein_coding - CCDS17758.1 1 329.0 0.0 0.4 0.1 38.3 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000068744 Psrc1 ENSMUST00000130906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068744 Psrc1 ENSMUST00000143309 - NO_TRANSLATION retained_intron ENSMUSG00000068744 Psrc1 ENSMUST00000148509 - NO_TRANSLATION retained_intron ENSMUSG00000068744 Psrc1 ENSMUST00000126461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068744 Psrc1 ENSMUST00000133405 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068744 Psrc1 ENSMUST00000128962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068744 Psrc1 ENSMUST00000102629 ENSMUSP00000099689 TRANSLATION protein_coding - CCDS17758.1 1 329.0 0.0 0.4 0.1 38.3 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000068744 Psrc1 ENSMUST00000128089 ENSMUSP00000115634 TRANSLATION protein_coding stop - 2 172.0 0.0 0.4 0.0 38.3 0.0 -4,-5 0.0496 1 -2.0 MINOR ENSMUSG00000068744 Psrc1 ENSMUST00000196430 - NO_TRANSLATION retained_intron ENSMUSG00000068744 Psrc1 ENSMUST00000145141 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028125 Abca4 ENSMUST00000136358 - NO_TRANSLATION retained_intron ENSMUSG00000028125 Abca4 ENSMUST00000137616 - NO_TRANSLATION retained_intron ENSMUSG00000028125 Abca4 ENSMUST00000140913 - NO_TRANSLATION retained_intron ENSMUSG00000028125 Abca4 ENSMUST00000013995 ENSMUSP00000013995 TRANSLATION protein_coding - CCDS38617.1 1 2310.0 20.0 32.21 0.3 380.6 7.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000028125 Abca4 ENSMUST00000150738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028125 Abca4 ENSMUST00000136624 - NO_TRANSLATION retained_intron ENSMUSG00000028125 Abca4 ENSMUST00000197728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028125 Abca4 ENSMUST00000144949 - NO_TRANSLATION retained_intron ENSMUSG00000028125 Abca4 ENSMUST00000141135 ENSMUSP00000143560 TRANSLATION protein_coding - - 1 1102.0 10.0 20.81 0.0 222.0 6.0 -4,-5 0.0175 - 0.0 MINOR ENSMUSG00000028125 Abca4 ENSMUST00000132199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058388 Phtf1 ENSMUST00000090685 ENSMUSP00000088184 TRANSLATION protein_coding - CCDS51029.1 1 716.0 0.0 0.0 6.0 232.6 9.0 -4,-5 0.72 1 7.416 MINOR ENSMUSG00000058388 Phtf1 ENSMUST00000156262 ENSMUSP00000121036 TRANSLATION protein_coding stop - 5 154.0 0.0 0.0 0.0 86.2 3.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000058388 Phtf1 ENSMUST00000150090 - NO_TRANSLATION retained_intron ENSMUSG00000058388 Phtf1 ENSMUST00000055425 ENSMUSP00000058137 TRANSLATION protein_coding - CCDS51030.1 1 708.0 0.0 0.0 2.1 86.2 7.0 -4,-5 0.0945 1 0.312 MINOR ENSMUSG00000058388 Phtf1 ENSMUST00000123611 ENSMUSP00000116193 TRANSLATION protein_coding stop - 5 272.0 0.0 0.0 0.0 169.3 5.0 -4,-6 0.003 - -2.0 MINOR ENSMUSG00000058388 Phtf1 ENSMUST00000063717 ENSMUSP00000066607 TRANSLATION protein_coding - CCDS17698.1 1 761.0 0.0 0.0 11.6 232.6 9.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000058388 Phtf1 ENSMUST00000150849 ENSMUSP00000118281 TRANSLATION nonsense_mediated_decay - - 5 233.0 0.0 0.0 0.0 232.6 5.0 -4,-5 0.0536 - -2.0 MINOR ENSMUSG00000058388 Phtf1 ENSMUST00000117150 ENSMUSP00000113973 TRANSLATION protein_coding - CCDS17698.1 1 761.0 0.0 0.0 11.6 232.6 9.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000058388 Phtf1 ENSMUST00000145727 ENSMUSP00000114722 TRANSLATION nonsense_mediated_decay - CCDS17698.1 1 761.0 0.0 0.0 11.6 232.6 9.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000058388 Phtf1 ENSMUST00000130385 - NO_TRANSLATION retained_intron ENSMUSG00000036432 Siah2 ENSMUST00000145032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036432 Siah2 ENSMUST00000070368 ENSMUSP00000067496 TRANSLATION protein_coding - CCDS17368.1 1 325.0 15.0 1.8 7.3 288.5 0.0 -4,-2 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000063887 Nlgn1 ENSMUST00000191835 ENSMUSP00000142086 TRANSLATION protein_coding - CCDS50874.1 1 814.0 9.0 4.4 14.3 648.6 2.0 -2,-5 0.9739 6 15.224 ALTERNATIVE:1 ENSMUSG00000063887 Nlgn1 ENSMUST00000108308 ENSMUSP00000103944 TRANSLATION protein_coding - CCDS50874.1 5 814.0 9.0 4.4 14.3 648.6 2.0 -2,-5 0.9739 6 15.224 ALTERNATIVE:1 ENSMUSG00000063887 Nlgn1 ENSMUST00000193603 ENSMUSP00000142200 TRANSLATION protein_coding - CCDS17268.1 1 843.0 9.0 4.73 14.7 637.0 2.0 -2,-5 1.0 7 16.0 PRINCIPAL:3 ENSMUSG00000063887 Nlgn1 ENSMUST00000192774 - NO_TRANSLATION retained_intron ENSMUSG00000063887 Nlgn1 ENSMUST00000075054 ENSMUSP00000074565 TRANSLATION protein_coding - CCDS17268.1 5 843.0 9.0 4.73 14.7 637.0 2.0 -2,-5 1.0 7 16.0 PRINCIPAL:3 ENSMUSG00000051444 Bbs12 ENSMUST00000108121 ENSMUSP00000103756 TRANSLATION protein_coding - CCDS57209.1 1 593.0 0.0 0.0 0.7 41.7 0.0 -4,-6 0.0417 - 3.618 MINOR ENSMUSG00000051444 Bbs12 ENSMUST00000057975 ENSMUSP00000052179 TRANSLATION protein_coding - CCDS38417.1 2 708.0 0.0 0.5 8.1 69.2 0.0 -4,0 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047583 Tyw3 ENSMUST00000170461 ENSMUSP00000131461 TRANSLATION protein_coding - - 5 144.0 0.0 3.5 0.0 136.0 0.0 -4,-6 0.0 3 5.514 MINOR ENSMUSG00000047583 Tyw3 ENSMUST00000122976 ENSMUSP00000114437 TRANSLATION protein_coding stop - 5 159.0 0.0 3.25 0.0 104.3 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000047583 Tyw3 ENSMUST00000052774 ENSMUSP00000057828 TRANSLATION protein_coding - CCDS38680.1 1 257.0 0.0 4.95 5.5 195.8 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000047583 Tyw3 ENSMUST00000148680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056476 Med12l ENSMUST00000040846 ENSMUSP00000041859 TRANSLATION protein_coding - - 1 756.0 0.0 0.0 0.0 620.3 0.0 -4,-7 0.0267 2 0.0 MINOR ENSMUSG00000056476 Med12l ENSMUST00000029393 ENSMUSP00000029393 TRANSLATION protein_coding - - 5 756.0 0.0 0.0 0.0 620.3 0.0 -4,-7 0.0267 2 0.0 MINOR ENSMUSG00000056476 Med12l ENSMUST00000040325 ENSMUSP00000042269 TRANSLATION protein_coding - - 5 2157.0 0.0 0.0 0.0 819.1 0.0 -4,-7 0.3354 7 2.0 ALTERNATIVE:2 ENSMUSG00000056476 Med12l ENSMUST00000199659 ENSMUSP00000142903 TRANSLATION protein_coding - CCDS79912.1 5 2185.0 0.0 0.0 0.1 820.7 0.0 -4,-7 0.9221 7 2.0 ALTERNATIVE:2 ENSMUSG00000056476 Med12l ENSMUST00000164225 ENSMUSP00000127038 TRANSLATION protein_coding - - 5 2192.0 0.0 0.0 0.0 820.7 0.0 -4,-7 0.9848 7 2.0 PRINCIPAL:4 ENSMUSG00000056476 Med12l ENSMUST00000197374 ENSMUSP00000143419 TRANSLATION nonsense_mediated_decay start - 1 301.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.004 - -2.0 MINOR ENSMUSG00000031286 Glt28d2 ENSMUST00000033643 ENSMUSP00000033643 TRANSLATION protein_coding - CCDS17443.1 1 165.0 16.0 1.0 21.0 101.2 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000009108 Gnat2 ENSMUST00000142568 - NO_TRANSLATION retained_intron ENSMUSG00000009108 Gnat2 ENSMUST00000130013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009108 Gnat2 ENSMUST00000131856 ENSMUSP00000121533 TRANSLATION protein_coding stop - 5 249.0 10.0 4.191 0.0 209.8 0.0 -4,-5 0.0001 1 -2.0 MINOR ENSMUSG00000009108 Gnat2 ENSMUST00000151326 ENSMUSP00000120425 TRANSLATION protein_coding stop - 2 232.0 17.0 6.0 0.0 257.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000009108 Gnat2 ENSMUST00000145101 ENSMUSP00000123125 TRANSLATION protein_coding stop - 3 112.0 7.0 2.83 0.0 83.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009108 Gnat2 ENSMUST00000058669 ENSMUSP00000053818 TRANSLATION protein_coding - CCDS17750.1 1 354.0 24.0 8.0 36.9 413.8 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000001023 S100a5 ENSMUST00000107329 ENSMUSP00000102952 TRANSLATION protein_coding - CCDS38505.1 1 93.0 13.0 2.0 15.0 58.5 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000001023 S100a5 ENSMUST00000001049 ENSMUSP00000001049 TRANSLATION protein_coding - CCDS38505.1 1 93.0 13.0 2.0 15.0 58.5 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000053054 Adh6a ENSMUST00000106247 ENSMUSP00000101854 TRANSLATION protein_coding - CCDS38652.1 1 375.0 33.0 7.41 31.9 66.9 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000053054 Adh6a ENSMUST00000013455 ENSMUSP00000013455 TRANSLATION protein_coding - - 1 368.0 32.0 7.08 2.3 66.9 0.0 -4,-6 0.227 13 16.842 MINOR ENSMUSG00000053192 Mllt11 ENSMUST00000198948 ENSMUSP00000142604 TRANSLATION protein_coding - CCDS38544.1 3 90.0 0.0 0.0 14.7 67.4 0.0 -4,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000053192 Mllt11 ENSMUST00000198087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053192 Mllt11 ENSMUST00000199917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053192 Mllt11 ENSMUST00000196025 ENSMUSP00000143755 TRANSLATION protein_coding - CCDS38544.1 3 90.0 0.0 0.0 14.7 67.4 0.0 -4,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000053192 Mllt11 ENSMUST00000065482 ENSMUSP00000066448 TRANSLATION protein_coding - CCDS38544.1 1 90.0 0.0 0.0 14.7 67.4 0.0 -4,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000028115 Bnipl ENSMUST00000107195 ENSMUSP00000102813 TRANSLATION protein_coding - CCDS17609.2 1 356.0 0.0 5.41 8.3 242.0 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000028115 Bnipl ENSMUST00000098871 ENSMUSP00000096468 TRANSLATION protein_coding - CCDS50988.1 1 280.0 0.0 4.41 0.0 186.3 0.0 -4,-5 0.0073 3 6.66 MINOR ENSMUSG00000028115 Bnipl ENSMUST00000176070 - NO_TRANSLATION retained_intron ENSMUSG00000028115 Bnipl ENSMUST00000125515 ENSMUSP00000120545 TRANSLATION protein_coding stop - 5 259.0 0.0 3.33 0.0 179.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028115 Bnipl ENSMUST00000137250 ENSMUSP00000115197 TRANSLATION protein_coding - - 5 328.0 0.0 5.41 0.0 242.0 0.0 -4,-5 0.0294 3 12.0 MINOR ENSMUSG00000043300 B3galnt1 ENSMUST00000061826 ENSMUSP00000058363 TRANSLATION protein_coding - CCDS17406.1 1 331.0 0.0 0.6 7.8 221.4 0.0 -1,-4 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000059921 Unc5c ENSMUST00000123631 - NO_TRANSLATION retained_intron ENSMUSG00000059921 Unc5c ENSMUST00000130636 ENSMUSP00000117487 TRANSLATION protein_coding - - 1 876.0 6.0 10.7 0.0 480.4 2.0 1,-3 0.0929 12 12.002 MINOR ENSMUSG00000059921 Unc5c ENSMUST00000142762 ENSMUSP00000118212 TRANSLATION nonsense_mediated_decay - CCDS80034.1 1 950.0 6.0 11.7 27.2 480.4 2.0 1,-2 1.0 - -2.0 MINOR ENSMUSG00000059921 Unc5c ENSMUST00000155416 - NO_TRANSLATION retained_intron ENSMUSG00000059921 Unc5c ENSMUST00000200114 - NO_TRANSLATION retained_intron ENSMUSG00000059921 Unc5c ENSMUST00000106236 ENSMUSP00000101843 TRANSLATION protein_coding - CCDS17873.1 1 931.0 6.0 11.7 21.8 480.4 2.0 1,-2 0.9743 14 17.176 ALTERNATIVE:1 ENSMUSG00000059921 Unc5c ENSMUST00000075282 ENSMUSP00000074758 TRANSLATION protein_coding - CCDS80034.1 1 950.0 6.0 11.7 27.2 480.4 2.0 1,-2 1.0 14 18.0 PRINCIPAL:4 ENSMUSG00000059921 Unc5c ENSMUST00000151007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074445 Sprr2a3 ENSMUST00000193337 ENSMUSP00000142110 TRANSLATION protein_coding - CCDS84652.1 1 83.0 0.0 0.0 0.0 34.3 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074445 Sprr2a3 ENSMUST00000090872 ENSMUSP00000088387 TRANSLATION protein_coding - CCDS84652.1 - 83.0 0.0 0.0 0.0 34.3 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027860 Vangl1 ENSMUST00000159586 ENSMUSP00000124874 TRANSLATION protein_coding stop - 3 137.0 0.0 0.0 0.0 138.2 1.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027860 Vangl1 ENSMUST00000161722 ENSMUSP00000124642 TRANSLATION protein_coding stop - 3 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000027860 Vangl1 ENSMUST00000159388 ENSMUSP00000125043 TRANSLATION protein_coding - - 5 393.0 0.0 0.0 0.0 551.9 4.0 -4,-5 0.0083 6 0.0 MINOR ENSMUSG00000027860 Vangl1 ENSMUST00000162361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027860 Vangl1 ENSMUST00000029453 ENSMUSP00000029453 TRANSLATION protein_coding - CCDS17686.1 1 526.0 0.0 0.0 34.3 858.0 4.0 -4,-5 1.0 12 10.0 PRINCIPAL:1 ENSMUSG00000027860 Vangl1 ENSMUST00000161021 ENSMUSP00000125484 TRANSLATION protein_coding start - 3 253.0 0.0 0.0 0.0 383.6 0.0 -4,-6 0.0001 8 -2.0 MINOR ENSMUSG00000027860 Vangl1 ENSMUST00000160226 - NO_TRANSLATION retained_intron ENSMUSG00000028008 Asic5 ENSMUST00000142889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028008 Asic5 ENSMUST00000029641 ENSMUSP00000029641 TRANSLATION protein_coding - CCDS17428.1 1 495.0 0.0 3.975 0.4 350.4 1.0 -4,-5 0.3546 - 8.0 ALTERNATIVE:2 ENSMUSG00000028008 Asic5 ENSMUST00000107736 ENSMUSP00000103364 TRANSLATION protein_coding - - 1 453.0 0.0 3.975 0.0 348.6 1.0 -4,-7 0.7106 - 8.0 PRINCIPAL:2 ENSMUSG00000056071 S100a9 ENSMUST00000117167 ENSMUSP00000112843 TRANSLATION protein_coding - CCDS17543.1 1 113.0 13.0 2.0 0.1 73.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000056071 S100a9 ENSMUST00000069960 ENSMUSP00000070842 TRANSLATION protein_coding - CCDS17543.1 1 113.0 13.0 2.0 0.1 73.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000027973 1700006A11Rik ENSMUST00000029598 ENSMUSP00000029598 TRANSLATION protein_coding - CCDS51064.1 1 544.0 0.0 4.82 0.0 232.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027973 1700006A11Rik ENSMUST00000198630 ENSMUSP00000143323 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048938 Nr1h5 ENSMUST00000198472 ENSMUSP00000142345 TRANSLATION nonsense_mediated_decay - - 1 379.0 8.0 4.1 0.0 100.4 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000048938 Nr1h5 ENSMUST00000197412 ENSMUSP00000143764 TRANSLATION nonsense_mediated_decay - - 1 387.0 8.0 4.265 0.0 100.4 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000048938 Nr1h5 ENSMUST00000196983 ENSMUSP00000142799 TRANSLATION protein_coding - CCDS79988.1 1 497.0 8.0 5.95 0.4 170.8 0.0 -4,-5 0.3008 - 17.67 MINOR ENSMUSG00000048938 Nr1h5 ENSMUST00000058899 ENSMUSP00000052557 TRANSLATION protein_coding - CCDS38568.1 1 505.0 8.0 6.115 4.0 166.4 0.0 -4,-5 1.0 - 19.736 PRINCIPAL:1 ENSMUSG00000048938 Nr1h5 ENSMUST00000196135 ENSMUSP00000143445 TRANSLATION protein_coding - CCDS79989.1 1 447.0 4.0 5.515 0.3 118.9 0.0 -4,-5 0.0118 - 10.686 MINOR ENSMUSG00000027739 Rab33b ENSMUST00000195715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027739 Rab33b ENSMUST00000054387 ENSMUSP00000063054 TRANSLATION protein_coding - CCDS38427.1 1 229.0 21.0 2.5 17.5 171.1 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000027739 Rab33b ENSMUST00000192172 ENSMUSP00000142215 TRANSLATION protein_coding stop - 5 65.0 8.0 1.0 0.0 31.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027800 Tm4sf1 ENSMUST00000171384 ENSMUSP00000130999 TRANSLATION protein_coding - CCDS38433.1 1 202.0 0.0 2.7 15.2 243.2 5.0 -1,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027800 Tm4sf1 ENSMUST00000029376 ENSMUSP00000029376 TRANSLATION protein_coding - CCDS38433.1 1 202.0 0.0 2.7 15.2 243.2 5.0 -1,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027800 Tm4sf1 ENSMUST00000196979 ENSMUSP00000143652 TRANSLATION protein_coding - CCDS38433.1 1 202.0 0.0 2.7 15.2 243.2 5.0 -1,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027800 Tm4sf1 ENSMUST00000196506 ENSMUSP00000143697 TRANSLATION protein_coding stop - 2 136.0 0.0 1.9 0.0 154.3 4.0 -1,-5 0.0049 1 -2.0 MINOR ENSMUSG00000027800 Tm4sf1 ENSMUST00000198030 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027800 Tm4sf1 ENSMUST00000196704 - NO_TRANSLATION retained_intron ENSMUSG00000043850 Clrn1 ENSMUST00000161419 - NO_TRANSLATION retained_intron ENSMUSG00000043850 Clrn1 ENSMUST00000051408 ENSMUSP00000051738 TRANSLATION protein_coding - CCDS38438.1 1 232.0 0.0 1.8 33.9 0.0 3.0 1,-3 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000043850 Clrn1 ENSMUST00000072551 ENSMUSP00000072363 TRANSLATION protein_coding - CCDS17369.1 1 172.0 0.0 1.2 1.0 0.0 1.0 1,-3 0.1647 - 4.002 MINOR ENSMUSG00000043850 Clrn1 ENSMUST00000055636 ENSMUSP00000052254 TRANSLATION protein_coding - CCDS38439.1 1 250.0 0.0 1.3 0.0 0.0 3.0 1,-3 0.224 - 4.332 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000156847 - NO_TRANSLATION retained_intron ENSMUSG00000064068 Mtx1 ENSMUST00000239452 ENSMUSP00000159336 TRANSLATION protein_coding - CCDS17494.2 - 461.0 0.0 6.2095 2.4 211.4 2.0 -4,-7 0.474 11 12.126 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000124086 - NO_TRANSLATION retained_intron ENSMUSG00000064068 Mtx1 ENSMUST00000173593 ENSMUSP00000133866 TRANSLATION nonsense_mediated_decay start - 5 185.0 0.0 4.28 0.0 135.6 0.0 -4,-7 0.0004 8 -2.0 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000173465 ENSMUSP00000133773 TRANSLATION nonsense_mediated_decay start - 5 68.0 0.0 0.83 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000152789 ENSMUSP00000133623 TRANSLATION protein_coding stop - 5 30.0 0.0 1.0 0.0 31.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000138633 - NO_TRANSLATION retained_intron ENSMUSG00000064068 Mtx1 ENSMUST00000138249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064068 Mtx1 ENSMUST00000129055 ENSMUSP00000133537 TRANSLATION nonsense_mediated_decay start - 3 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000119222 ENSMUSP00000113986 TRANSLATION protein_coding - - 2 355.0 0.0 6.4095 0.0 185.0 2.0 -4,-7 0.0497 10 10.416 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000173475 ENSMUSP00000134110 TRANSLATION protein_coding start - 5 162.0 0.0 1.7745 0.0 41.5 2.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000073572 ENSMUSP00000073261 TRANSLATION protein_coding - - 1 317.0 0.0 6.2095 6.3 211.4 2.0 -4,-7 1.0 11 13.598 PRINCIPAL:1 ENSMUSG00000064068 Mtx1 ENSMUST00000174324 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064068 Mtx1 ENSMUST00000150303 - NO_TRANSLATION retained_intron ENSMUSG00000064068 Mtx1 ENSMUST00000174126 ENSMUSP00000133291 TRANSLATION protein_coding stop - 5 172.0 0.0 4.005 0.0 129.7 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000173477 ENSMUSP00000133282 TRANSLATION protein_coding start/stop - 5 298.0 0.0 5.6095 0.0 207.5 2.0 -4,-5 0.0186 11 -2.0 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000173239 - NO_TRANSLATION retained_intron ENSMUSG00000064068 Mtx1 ENSMUST00000118964 ENSMUSP00000114009 TRANSLATION protein_coding - - 5 286.0 0.0 5.2095 0.0 155.9 2.0 -4,-7 0.0036 8 6.27 MINOR ENSMUSG00000064068 Mtx1 ENSMUST00000174218 - NO_TRANSLATION retained_intron ENSMUSG00000027796 Smad9 ENSMUST00000029371 ENSMUSP00000029371 TRANSLATION protein_coding - CCDS17354.1 1 430.0 4.0 4.0 13.6 393.4 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000037033 Clca3b ENSMUST00000159989 ENSMUSP00000124581 TRANSLATION protein_coding - CCDS51086.1 1 1044.0 5.0 6.64 0.0 509.7 0.0 4,-1 1.0 11 17.0 PRINCIPAL:1 ENSMUSG00000037111 Setd7 ENSMUST00000037141 ENSMUSP00000043492 TRANSLATION protein_coding - CCDS17341.1 1 366.0 11.0 7.0 24.1 78.3 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000037111 Setd7 ENSMUST00000195080 - NO_TRANSLATION retained_intron ENSMUSG00000037111 Setd7 ENSMUST00000161755 - NO_TRANSLATION retained_intron ENSMUSG00000037111 Setd7 ENSMUST00000194828 - NO_TRANSLATION retained_intron ENSMUSG00000036615 Rfxap ENSMUST00000182246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036615 Rfxap ENSMUST00000182084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036615 Rfxap ENSMUST00000044373 ENSMUSP00000040917 TRANSLATION protein_coding - CCDS50907.1 1 231.0 0.0 2.0 0.0 197.1 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000074483 Bglap ENSMUST00000128732 - NO_TRANSLATION retained_intron ENSMUSG00000074483 Bglap ENSMUST00000076048 ENSMUSP00000075425 TRANSLATION protein_coding - CCDS17474.1 1 95.0 2.0 1.0 3.9 0.0 0.0 3,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000025766 D3Ertd751e ENSMUST00000192193 ENSMUSP00000142092 TRANSLATION protein_coding - CCDS50900.1 1 108.0 0.0 2.83 0.0 0.0 0.0 -4,-5 0.0585 2 1.998 MINOR ENSMUSG00000025766 D3Ertd751e ENSMUST00000143841 ENSMUSP00000118749 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 2.08 0.0 0.0 0.0 -4,-5 0.0005 2 -2.0 MINOR ENSMUSG00000025766 D3Ertd751e ENSMUST00000194346 ENSMUSP00000141925 TRANSLATION protein_coding - CCDS17332.1 1 192.0 0.0 4.83 5.2 0.0 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000025766 D3Ertd751e ENSMUST00000146165 ENSMUSP00000119049 TRANSLATION protein_coding - CCDS17332.1 1 192.0 0.0 4.83 5.2 0.0 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000025766 D3Ertd751e ENSMUST00000195030 ENSMUSP00000142263 TRANSLATION protein_coding start - 5 21.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0043 - -2.0 MINOR ENSMUSG00000025766 D3Ertd751e ENSMUST00000026868 ENSMUSP00000026868 TRANSLATION protein_coding stop - 3 118.0 0.0 3.08 1.5 0.0 0.0 -4,-5 0.1181 2 -2.0 MINOR ENSMUSG00000025766 D3Ertd751e ENSMUST00000193228 ENSMUSP00000142198 TRANSLATION nonsense_mediated_decay start - 5 27.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0027 - -2.0 MINOR ENSMUSG00000025766 D3Ertd751e ENSMUST00000193075 ENSMUSP00000141756 TRANSLATION protein_coding start - 5 154.0 0.0 3.83 0.0 0.0 0.0 -4,-5 0.0024 2 -2.0 MINOR ENSMUSG00000025766 D3Ertd751e ENSMUST00000195577 - NO_TRANSLATION retained_intron ENSMUSG00000025766 D3Ertd751e ENSMUST00000026867 ENSMUSP00000026867 TRANSLATION protein_coding - CCDS50900.1 5 108.0 0.0 2.83 0.0 0.0 0.0 -4,-5 0.0585 2 1.998 MINOR ENSMUSG00000025766 D3Ertd751e ENSMUST00000192799 - NO_TRANSLATION retained_intron ENSMUSG00000025766 D3Ertd751e ENSMUST00000119572 ENSMUSP00000112558 TRANSLATION protein_coding - CCDS71239.1 1 108.0 0.0 2.83 0.0 0.0 0.0 -4,-5 0.0585 2 1.998 MINOR ENSMUSG00000025766 D3Ertd751e ENSMUST00000120167 ENSMUSP00000113139 TRANSLATION protein_coding - - 5 127.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0011 2 1.5 MINOR ENSMUSG00000025766 D3Ertd751e ENSMUST00000195882 ENSMUSP00000142037 TRANSLATION protein_coding - CCDS17332.1 2 192.0 0.0 4.83 5.2 0.0 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000025766 D3Ertd751e ENSMUST00000108065 ENSMUSP00000103700 TRANSLATION protein_coding - CCDS17332.1 1 192.0 0.0 4.83 5.2 0.0 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000015697 Setdb1 ENSMUST00000132468 - NO_TRANSLATION retained_intron ENSMUSG00000015697 Setdb1 ENSMUST00000152260 - NO_TRANSLATION retained_intron ENSMUSG00000015697 Setdb1 ENSMUST00000015841 ENSMUSP00000015841 TRANSLATION protein_coding - CCDS17613.1 1 1308.0 30.0 8.532 0.1 232.2 0.0 -2,-5 1.0 19 14.0 PRINCIPAL:4 ENSMUSG00000015697 Setdb1 ENSMUST00000107170 ENSMUSP00000102788 TRANSLATION protein_coding - CCDS17613.1 1 1308.0 30.0 8.532 0.1 232.2 0.0 -2,-5 1.0 19 14.0 PRINCIPAL:4 ENSMUSG00000015697 Setdb1 ENSMUST00000107171 ENSMUSP00000102789 TRANSLATION protein_coding - CCDS50991.1 1 1307.0 30.0 8.532 0.1 232.2 0.0 -2,-5 0.9974 19 14.0 ALTERNATIVE:2 ENSMUSG00000015697 Setdb1 ENSMUST00000124638 - NO_TRANSLATION retained_intron ENSMUSG00000027865 Gdap2 ENSMUST00000029459 ENSMUSP00000029459 TRANSLATION protein_coding - CCDS17675.1 1 498.0 0.0 7.145 12.6 214.7 0.0 -4,-6 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000027865 Gdap2 ENSMUST00000200036 - NO_TRANSLATION retained_intron ENSMUSG00000027865 Gdap2 ENSMUST00000197797 ENSMUSP00000143195 TRANSLATION protein_coding start - 1 47.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027865 Gdap2 ENSMUST00000150223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027865 Gdap2 ENSMUST00000106997 ENSMUSP00000102610 TRANSLATION protein_coding - - 2 546.0 0.0 6.945 0.0 214.7 0.0 -4,-6 0.0233 7 11.598 MINOR ENSMUSG00000039887 Alg14 ENSMUST00000198341 ENSMUSP00000142775 TRANSLATION protein_coding start - 2 133.0 0.0 3.066 0.0 100.3 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000039887 Alg14 ENSMUST00000199554 ENSMUSP00000142857 TRANSLATION protein_coding - - 3 92.0 0.0 1.2 0.0 0.0 0.0 1,-3 0.0039 - 0.0 MINOR ENSMUSG00000039887 Alg14 ENSMUST00000039442 ENSMUSP00000038387 TRANSLATION protein_coding - CCDS17801.1 1 217.0 0.0 4.2 2.0 226.1 0.0 1,-3 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000039887 Alg14 ENSMUST00000198235 ENSMUSP00000142989 TRANSLATION nonsense_mediated_decay - - 3 60.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000042124 Lce1f ENSMUST00000047153 ENSMUSP00000037349 TRANSLATION protein_coding - CCDS38515.1 1 147.0 0.0 0.0 0.0 33.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000049593 Lce1h ENSMUST00000051521 ENSMUSP00000058647 TRANSLATION protein_coding - CCDS17570.1 1 140.0 0.0 0.0 0.0 26.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000015714 Cers2 ENSMUST00000139866 ENSMUSP00000120190 TRANSLATION protein_coding stop - 5 245.0 0.0 6.58 0.0 103.8 3.0 -4,-5 0.0005 3 -2.0 MINOR ENSMUSG00000015714 Cers2 ENSMUST00000134702 - NO_TRANSLATION retained_intron ENSMUSG00000015714 Cers2 ENSMUST00000129267 ENSMUSP00000121110 TRANSLATION protein_coding stop - 3 220.0 0.0 5.83 0.0 75.8 2.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000015714 Cers2 ENSMUST00000015858 ENSMUSP00000015858 TRANSLATION protein_coding - CCDS17612.1 1 380.0 0.0 8.78 24.8 161.3 5.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000015714 Cers2 ENSMUST00000142398 - NO_TRANSLATION retained_intron ENSMUSG00000015714 Cers2 ENSMUST00000133748 - NO_TRANSLATION retained_intron ENSMUSG00000015714 Cers2 ENSMUST00000139498 ENSMUSP00000122672 TRANSLATION protein_coding stop - 3 130.0 0.0 3.0 0.0 26.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000015714 Cers2 ENSMUST00000154055 - NO_TRANSLATION retained_intron ENSMUSG00000015714 Cers2 ENSMUST00000156850 - NO_TRANSLATION retained_intron ENSMUSG00000050635 Sprr2f ENSMUST00000050397 ENSMUSP00000050902 TRANSLATION protein_coding - CCDS57226.1 1 76.0 0.0 0.0 0.0 71.0 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000028197 Col24a1 ENSMUST00000139001 ENSMUSP00000119736 TRANSLATION protein_coding stop - 3 62.0 3.0 0.0 0.0 0.0 0.0 -4,-7 0.0011 - -2.0 MINOR ENSMUSG00000028197 Col24a1 ENSMUST00000127379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028197 Col24a1 ENSMUST00000029848 ENSMUSP00000029848 TRANSLATION protein_coding - CCDS17892.1 1 1733.0 0.0 17.854 0.1 452.2 0.0 -1,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000028197 Col24a1 ENSMUST00000142441 - NO_TRANSLATION retained_intron ENSMUSG00000063954 H2ac19 ENSMUST00000074976 ENSMUSP00000100581 TRANSLATION protein_coding - CCDS57241.1 - 130.0 0.0 1.0 12.5 135.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038304 Cd160 ENSMUST00000047702 ENSMUSP00000037466 TRANSLATION protein_coding - CCDS17648.1 1 185.0 0.0 1.4 4.6 34.5 0.0 0,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038304 Cd160 ENSMUST00000165991 ENSMUSP00000132363 TRANSLATION protein_coding - CCDS51011.1 3 141.0 0.0 1.0 0.0 34.5 0.0 0,-3 0.1054 - 10.284 MINOR ENSMUSG00000038304 Cd160 ENSMUST00000107074 ENSMUSP00000102689 TRANSLATION protein_coding - CCDS17648.1 1 185.0 0.0 1.4 4.6 34.5 0.0 0,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000056498 Tmem154 ENSMUST00000129417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056498 Tmem154 ENSMUST00000107682 ENSMUSP00000103310 TRANSLATION protein_coding - CCDS38467.1 1 181.0 0.0 0.0 3.0 163.0 0.0 1,-2 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000056498 Tmem154 ENSMUST00000128344 - NO_TRANSLATION retained_intron ENSMUSG00000056498 Tmem154 ENSMUST00000134890 - NO_TRANSLATION retained_intron ENSMUSG00000046676 Lce1l ENSMUST00000054426 ENSMUSP00000057762 TRANSLATION protein_coding - CCDS38518.1 1 135.0 0.0 0.0 0.0 28.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000027820 Mme ENSMUST00000194324 ENSMUSP00000142259 TRANSLATION protein_coding stop - 3 133.0 0.0 2.8 0.0 58.4 3.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000027820 Mme ENSMUST00000194836 ENSMUSP00000141452 TRANSLATION protein_coding stop - 3 187.0 0.0 4.63 0.0 107.6 3.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027820 Mme ENSMUST00000191633 ENSMUSP00000141469 TRANSLATION protein_coding stop - 3 130.0 0.0 3.3 0.0 40.8 3.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000027820 Mme ENSMUST00000192002 ENSMUSP00000141483 TRANSLATION protein_coding stop - 3 178.0 0.0 4.3 0.0 106.6 3.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027820 Mme ENSMUST00000194150 ENSMUSP00000141544 TRANSLATION protein_coding - CCDS17381.1 1 750.0 3.0 20.38 22.2 623.0 3.0 -4,-5 1.0 28 19.0 PRINCIPAL:1 ENSMUSG00000027820 Mme ENSMUST00000193805 - NO_TRANSLATION retained_intron ENSMUSG00000027820 Mme ENSMUST00000029400 ENSMUSP00000029400 TRANSLATION protein_coding - CCDS17381.1 1 750.0 3.0 20.38 22.2 623.0 3.0 -4,-5 1.0 28 19.0 PRINCIPAL:1 ENSMUSG00000027820 Mme ENSMUST00000194134 ENSMUSP00000142205 TRANSLATION protein_coding - CCDS17381.1 1 750.0 3.0 20.38 22.2 623.0 3.0 -4,-5 1.0 28 19.0 PRINCIPAL:1 ENSMUSG00000037894 H2az1 ENSMUST00000173790 ENSMUSP00000133339 TRANSLATION protein_coding - - 5 87.0 0.0 2.462 0.0 47.8 0.0 -4,-6 0.0 - 4.518 MINOR ENSMUSG00000037894 H2az1 ENSMUST00000138010 - NO_TRANSLATION retained_intron ENSMUSG00000037894 H2az1 ENSMUST00000125821 - NO_TRANSLATION retained_intron ENSMUSG00000037894 H2az1 ENSMUST00000172696 ENSMUSP00000133541 TRANSLATION nonsense_mediated_decay - - 5 54.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037894 H2az1 ENSMUST00000041045 ENSMUSP00000036907 TRANSLATION protein_coding - CCDS38647.1 1 128.0 0.0 4.07 35.3 118.9 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037894 H2az1 ENSMUST00000173666 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037894 H2az1 ENSMUST00000174561 ENSMUSP00000134059 TRANSLATION protein_coding - CCDS84676.1 1 105.0 0.0 3.41 0.0 82.4 0.0 -4,-6 0.0076 - 8.49 MINOR ENSMUSG00000027984 Hadh ENSMUST00000152427 - NO_TRANSLATION retained_intron ENSMUSG00000027984 Hadh ENSMUST00000029610 ENSMUSP00000029610 TRANSLATION protein_coding - CCDS38640.1 1 314.0 40.0 7.75 27.7 329.3 0.0 -4,0 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000048997 Atxn7l2 ENSMUST00000127157 ENSMUSP00000119223 TRANSLATION protein_coding stop - 3 121.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000048997 Atxn7l2 ENSMUST00000102633 ENSMUSP00000099693 TRANSLATION protein_coding - CCDS17754.1 1 696.0 8.0 1.15 2.1 88.5 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:2 ENSMUSG00000048997 Atxn7l2 ENSMUST00000117784 ENSMUSP00000114031 TRANSLATION protein_coding - CCDS17754.1 1 696.0 8.0 1.15 2.1 88.5 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:2 ENSMUSG00000048997 Atxn7l2 ENSMUST00000196823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048997 Atxn7l2 ENSMUST00000117409 ENSMUSP00000112976 TRANSLATION protein_coding - - 5 664.0 8.0 1.15 0.0 88.5 0.0 -4,-5 0.0781 1 14.0 ALTERNATIVE:2 ENSMUSG00000048997 Atxn7l2 ENSMUST00000141054 - NO_TRANSLATION retained_intron ENSMUSG00000048997 Atxn7l2 ENSMUST00000119650 ENSMUSP00000113020 TRANSLATION protein_coding - - 5 661.0 5.0 1.15 0.0 88.5 0.0 -4,-7 0.0829 1 11.75 MINOR ENSMUSG00000023057 Fabp2 ENSMUST00000023820 ENSMUSP00000023820 TRANSLATION protein_coding - CCDS17813.1 1 132.0 23.0 3.25 34.9 61.8 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000028111 Ctsk ENSMUST00000015664 ENSMUSP00000015664 TRANSLATION protein_coding - CCDS17615.1 1 329.0 4.0 7.0 14.5 319.9 0.0 1,-4 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000091091 Kcnmb3 ENSMUST00000164954 ENSMUSP00000130177 TRANSLATION protein_coding - CCDS57206.1 5 239.0 0.0 1.88 0.1 247.6 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027706 Sec62 ENSMUST00000029256 ENSMUSP00000029256 TRANSLATION protein_coding - CCDS17286.1 1 398.0 0.0 0.8 7.3 256.7 0.0 -4,-6 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000027706 Sec62 ENSMUST00000191730 - NO_TRANSLATION retained_intron ENSMUSG00000027706 Sec62 ENSMUST00000195072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074619 Fundc2b ENSMUST00000099123 ENSMUSP00000141045 TRANSLATION protein_coding - - - 184.0 0.0 0.6 0.0 94.3 0.0 -4,-2 0.7864 2 12.0 PRINCIPAL:1 ENSMUSG00000054414 Slc30a7 ENSMUST00000198571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054414 Slc30a7 ENSMUST00000197847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054414 Slc30a7 ENSMUST00000197333 - NO_TRANSLATION retained_intron ENSMUSG00000054414 Slc30a7 ENSMUST00000067485 ENSMUSP00000065254 TRANSLATION protein_coding - CCDS17783.1 1 378.0 0.0 1.0 15.8 150.3 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000095143 Hsd3b4 ENSMUST00000196861 ENSMUSP00000142522 TRANSLATION protein_coding - CCDS17665.1 1 373.0 27.0 3.0 4.5 351.7 1.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000095143 Hsd3b4 ENSMUST00000179429 ENSMUSP00000136588 TRANSLATION protein_coding - CCDS17665.1 2 373.0 27.0 3.0 4.5 351.7 1.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000027765 P2ry1 ENSMUST00000029331 ENSMUSP00000029331 TRANSLATION protein_coding - CCDS17377.1 1 373.0 0.0 1.0 11.0 133.8 6.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000027765 P2ry1 ENSMUST00000193201 ENSMUSP00000142006 TRANSLATION protein_coding - CCDS17377.1 1 373.0 0.0 1.0 11.0 133.8 6.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000027765 P2ry1 ENSMUST00000193943 ENSMUSP00000141371 TRANSLATION protein_coding - CCDS17377.1 - 373.0 0.0 1.0 11.0 133.8 6.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000028013 Ppa2 ENSMUST00000153387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028013 Ppa2 ENSMUST00000196807 - NO_TRANSLATION retained_intron ENSMUSG00000028013 Ppa2 ENSMUST00000150386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028013 Ppa2 ENSMUST00000122334 ENSMUSP00000113369 TRANSLATION protein_coding - CCDS80024.1 1 329.0 11.0 7.014 1.4 197.7 0.0 -1,2 0.7173 15 12.868 ALTERNATIVE:2 ENSMUSG00000028013 Ppa2 ENSMUST00000125858 - NO_TRANSLATION retained_intron ENSMUSG00000028013 Ppa2 ENSMUST00000106315 ENSMUSP00000101922 TRANSLATION protein_coding start - 3 152.0 5.0 3.3 0.0 92.4 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000028013 Ppa2 ENSMUST00000198519 - NO_TRANSLATION retained_intron ENSMUSG00000028013 Ppa2 ENSMUST00000029644 ENSMUSP00000029644 TRANSLATION protein_coding - CCDS17850.1 1 330.0 11.0 7.08 1.4 197.7 0.0 -1,2 1.0 16 13.0 PRINCIPAL:2 ENSMUSG00000001017 Chtop ENSMUST00000107346 ENSMUSP00000102969 TRANSLATION protein_coding - CCDS79967.1 1 203.0 0.0 0.0 8.0 76.8 0.0 -4,-7 0.8118 4 3.228 MINOR ENSMUSG00000001017 Chtop ENSMUST00000249613 ENSMUSP00000159822 TRANSLATION protein_coding - - - 269.0 0.0 0.0 0.0 81.6 0.0 -4,-6 0.0334 4 2.0 MINOR ENSMUSG00000001017 Chtop ENSMUST00000049937 ENSMUSP00000061800 TRANSLATION protein_coding - CCDS79968.1 1 249.0 0.0 0.0 9.2 81.6 0.0 -4,-7 1.0 4 5.0 PRINCIPAL:1 ENSMUSG00000001017 Chtop ENSMUST00000107344 ENSMUSP00000102967 TRANSLATION protein_coding - CCDS17532.1 1 224.0 0.0 0.0 0.7 81.6 0.0 -4,-1 0.1723 4 2.0 MINOR ENSMUSG00000001017 Chtop ENSMUST00000131868 ENSMUSP00000123448 TRANSLATION protein_coding stop - 3 123.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000001017 Chtop ENSMUST00000001043 ENSMUSP00000001043 TRANSLATION protein_coding - CCDS17532.1 1 224.0 0.0 0.0 0.7 81.6 0.0 -4,-1 0.1723 4 2.0 MINOR ENSMUSG00000001017 Chtop ENSMUST00000146740 ENSMUSP00000116945 TRANSLATION protein_coding stop - 3 195.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0004 4 -2.0 MINOR ENSMUSG00000001017 Chtop ENSMUST00000107342 ENSMUSP00000102965 TRANSLATION protein_coding - CCDS79964.1 1 177.0 0.0 0.0 0.0 76.8 0.0 -4,-2 0.0611 4 0.666 MINOR ENSMUSG00000001017 Chtop ENSMUST00000076639 ENSMUSP00000075936 TRANSLATION protein_coding - CCDS79966.1 1 202.0 0.0 0.0 8.0 76.8 0.0 -4,-7 0.8118 4 3.228 MINOR ENSMUSG00000001017 Chtop ENSMUST00000107343 ENSMUSP00000102966 TRANSLATION protein_coding - CCDS79965.1 1 178.0 0.0 0.0 0.0 76.8 0.0 -4,-1 0.0614 4 0.666 MINOR ENSMUSG00000089911 Mfsd14a ENSMUST00000130631 - NO_TRANSLATION retained_intron ENSMUSG00000089911 Mfsd14a ENSMUST00000196274 - NO_TRANSLATION retained_intron ENSMUSG00000089911 Mfsd14a ENSMUST00000150402 - NO_TRANSLATION retained_intron ENSMUSG00000089911 Mfsd14a ENSMUST00000138418 - NO_TRANSLATION retained_intron ENSMUSG00000089911 Mfsd14a ENSMUST00000029570 ENSMUSP00000029570 TRANSLATION protein_coding - CCDS17790.1 1 490.0 0.0 2.06 25.9 110.8 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000027959 Sass6 ENSMUST00000198311 ENSMUSP00000143233 TRANSLATION protein_coding - CCDS17789.1 1 654.0 0.0 10.83 9.6 92.1 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000027959 Sass6 ENSMUST00000198747 - NO_TRANSLATION retained_intron ENSMUSG00000027959 Sass6 ENSMUST00000197335 ENSMUSP00000143123 TRANSLATION protein_coding - CCDS80008.1 1 619.0 0.0 9.25 0.0 92.1 0.0 -4,-5 0.126 3 8.838 MINOR ENSMUSG00000027959 Sass6 ENSMUST00000029571 ENSMUSP00000029571 TRANSLATION nonsense_mediated_decay - - 1 66.0 0.0 1.58 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000027959 Sass6 ENSMUST00000198514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027959 Sass6 ENSMUST00000198386 ENSMUSP00000143175 TRANSLATION protein_coding - - 1 560.0 0.0 10.83 0.0 92.1 0.0 -4,-7 0.0648 3 12.0 MINOR ENSMUSG00000027959 Sass6 ENSMUST00000197063 - NO_TRANSLATION retained_intron ENSMUSG00000027959 Sass6 ENSMUST00000196619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074513 Arfip1 ENSMUST00000143514 ENSMUSP00000122964 TRANSLATION protein_coding - CCDS38466.1 5 373.0 0.0 4.8 27.2 268.7 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:3 ENSMUSG00000074513 Arfip1 ENSMUST00000107687 ENSMUSP00000103315 TRANSLATION protein_coding - - 5 366.0 0.0 4.8 26.0 268.7 0.0 -4,-5 0.8267 10 11.816 ALTERNATIVE:1 ENSMUSG00000074513 Arfip1 ENSMUST00000098990 ENSMUSP00000096588 TRANSLATION protein_coding - CCDS79931.1 1 341.0 0.0 4.8 13.7 268.7 0.0 -4,-5 0.8566 10 9.94 MINOR ENSMUSG00000028041 Adam15 ENSMUST00000155295 - NO_TRANSLATION retained_intron ENSMUSG00000028041 Adam15 ENSMUST00000139705 - NO_TRANSLATION retained_intron ENSMUSG00000028041 Adam15 ENSMUST00000134839 - NO_TRANSLATION retained_intron ENSMUSG00000028041 Adam15 ENSMUST00000134590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028041 Adam15 ENSMUST00000107448 ENSMUSP00000103072 TRANSLATION protein_coding - - 5 839.0 18.0 7.305 0.0 405.7 1.0 1,-3 0.3353 10 14.0 ALTERNATIVE:2 ENSMUSG00000028041 Adam15 ENSMUST00000148068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028041 Adam15 ENSMUST00000107446 ENSMUSP00000103070 TRANSLATION protein_coding - - 5 448.0 7.0 3.925 0.0 228.7 0.0 1,-3 0.0013 5 0.858 MINOR ENSMUSG00000028041 Adam15 ENSMUST00000156250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028041 Adam15 ENSMUST00000144608 - NO_TRANSLATION retained_intron ENSMUSG00000028041 Adam15 ENSMUST00000184651 ENSMUSP00000139147 TRANSLATION nonsense_mediated_decay - CCDS17502.1 1 864.0 18.0 7.305 0.0 405.7 1.0 1,-3 1.0 10 -2.0 MINOR ENSMUSG00000028041 Adam15 ENSMUST00000074582 ENSMUSP00000074167 TRANSLATION protein_coding - CCDS17503.1 1 815.0 18.0 7.305 0.0 405.7 1.0 1,-3 0.477 10 14.0 ALTERNATIVE:2 ENSMUSG00000028041 Adam15 ENSMUST00000155868 - NO_TRANSLATION retained_intron ENSMUSG00000028041 Adam15 ENSMUST00000029676 ENSMUSP00000029676 TRANSLATION protein_coding - CCDS17502.1 1 864.0 18.0 7.305 0.0 405.7 1.0 1,-3 1.0 10 14.0 PRINCIPAL:2 ENSMUSG00000028148 Them5 ENSMUST00000029794 ENSMUSP00000029794 TRANSLATION protein_coding - CCDS17590.1 1 248.0 0.0 4.1 10.0 21.8 0.0 -4,0 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000028148 Them5 ENSMUST00000198083 ENSMUSP00000142808 TRANSLATION protein_coding - - 5 301.0 0.0 3.6 0.0 21.8 0.0 -4,0 0.0081 3 10.998 MINOR ENSMUSG00000047696 Ccdc144b ENSMUST00000200469 ENSMUSP00000142910 TRANSLATION protein_coding - CCDS38415.1 1 520.0 0.0 0.0 0.0 128.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047696 Ccdc144b ENSMUST00000166644 ENSMUSP00000132995 TRANSLATION protein_coding - CCDS38415.1 5 520.0 0.0 0.0 0.0 128.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047696 Ccdc144b ENSMUST00000196964 ENSMUSP00000142406 TRANSLATION nonsense_mediated_decay - - 1 239.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000069094 Pde7a ENSMUST00000143120 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069094 Pde7a ENSMUST00000121951 ENSMUSP00000113173 TRANSLATION protein_coding - - 3 68.0 0.0 0.0 0.0 0.0 0.0 3,-1 0.0011 1 0.0 MINOR ENSMUSG00000069094 Pde7a ENSMUST00000139426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069094 Pde7a ENSMUST00000141621 - NO_TRANSLATION retained_intron ENSMUSG00000069094 Pde7a ENSMUST00000091314 ENSMUSP00000088863 TRANSLATION protein_coding - CCDS38398.1 1 456.0 6.0 8.5 16.1 260.2 0.0 3,-1 0.9343 4 17.452 ALTERNATIVE:1 ENSMUSG00000069094 Pde7a ENSMUST00000099195 ENSMUSP00000096800 TRANSLATION protein_coding - CCDS50871.1 1 482.0 6.0 8.5 18.5 260.2 0.0 -4,-7 1.0 4 18.0 PRINCIPAL:4 ENSMUSG00000069094 Pde7a ENSMUST00000148590 - NO_TRANSLATION retained_intron ENSMUSG00000069094 Pde7a ENSMUST00000129060 - NO_TRANSLATION retained_intron ENSMUSG00000069094 Pde7a ENSMUST00000156652 ENSMUSP00000119685 TRANSLATION nonsense_mediated_decay - - 5 176.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000069094 Pde7a ENSMUST00000149081 ENSMUSP00000120420 TRANSLATION nonsense_mediated_decay start - 5 31.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000028032 Papss1 ENSMUST00000196638 ENSMUSP00000143211 TRANSLATION nonsense_mediated_decay - - 3 42.0 3.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000028032 Papss1 ENSMUST00000197402 ENSMUSP00000143526 TRANSLATION nonsense_mediated_decay - - 1 42.0 3.0 1.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000028032 Papss1 ENSMUST00000199878 ENSMUSP00000142533 TRANSLATION protein_coding - CCDS80023.1 1 603.0 41.0 11.0 8.8 656.5 0.0 -4,-2 0.5485 15 19.164 MINOR ENSMUSG00000028032 Papss1 ENSMUST00000196408 ENSMUSP00000143225 TRANSLATION protein_coding stop - 3 37.0 3.0 1.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000028032 Papss1 ENSMUST00000029666 ENSMUSP00000029666 TRANSLATION protein_coding - CCDS38641.1 1 624.0 41.0 11.0 27.8 656.5 0.0 -4,-6 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000028032 Papss1 ENSMUST00000200527 ENSMUSP00000142616 TRANSLATION protein_coding - CCDS80023.1 5 603.0 41.0 11.0 8.8 656.5 0.0 -4,-2 0.5485 15 19.164 MINOR ENSMUSG00000093769 H3c14 ENSMUST00000177796 ENSMUSP00000151536 TRANSLATION protein_coding - - - 181.0 0.0 1.0 1.1 181.6 0.0 -4,-2 0.182 - 12.012 MINOR ENSMUSG00000093769 H3c14 ENSMUST00000176059 ENSMUSP00000134751 TRANSLATION protein_coding - CCDS38554.2 - 136.0 0.0 1.0 31.8 181.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000059743 Fdps ENSMUST00000200433 - NO_TRANSLATION retained_intron ENSMUSG00000059743 Fdps ENSMUST00000196709 ENSMUSP00000142770 TRANSLATION protein_coding - CCDS17488.1 5 353.0 23.0 9.25 12.1 293.5 0.0 -4,-6 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000059743 Fdps ENSMUST00000196921 ENSMUSP00000142704 TRANSLATION protein_coding stop - 2 225.0 15.0 3.75 0.0 108.9 0.0 0,-4 0.0012 7 -2.0 MINOR ENSMUSG00000059743 Fdps ENSMUST00000196254 ENSMUSP00000142669 TRANSLATION protein_coding start/stop - 3 240.0 16.0 6.283 0.0 233.0 0.0 -4,-5 0.0001 6 -2.0 MINOR ENSMUSG00000059743 Fdps ENSMUST00000081848 ENSMUSP00000080531 TRANSLATION protein_coding - CCDS17488.1 1 353.0 23.0 9.25 12.1 293.5 0.0 -4,-6 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000059743 Fdps ENSMUST00000199668 ENSMUSP00000142393 TRANSLATION protein_coding stop - 5 121.0 15.0 2.75 1.0 87.0 0.0 -4,-6 0.0153 7 -2.0 MINOR ENSMUSG00000059743 Fdps ENSMUST00000198239 - NO_TRANSLATION retained_intron ENSMUSG00000027668 Mfn1 ENSMUST00000125182 - NO_TRANSLATION retained_intron ENSMUSG00000027668 Mfn1 ENSMUST00000140328 - NO_TRANSLATION retained_intron ENSMUSG00000027668 Mfn1 ENSMUST00000194384 - NO_TRANSLATION retained_intron ENSMUSG00000027668 Mfn1 ENSMUST00000195334 - NO_TRANSLATION retained_intron ENSMUSG00000027668 Mfn1 ENSMUST00000191661 - NO_TRANSLATION retained_intron ENSMUSG00000027668 Mfn1 ENSMUST00000151320 ENSMUSP00000120960 TRANSLATION protein_coding start - 2 319.0 0.0 0.9 0.0 161.3 0.0 -4,-5 0.0007 11 -2.0 MINOR ENSMUSG00000027668 Mfn1 ENSMUST00000147350 ENSMUSP00000116380 TRANSLATION protein_coding stop - 3 239.0 10.0 5.83 0.0 84.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000027668 Mfn1 ENSMUST00000091257 ENSMUSP00000088801 TRANSLATION protein_coding - CCDS17296.1 1 741.0 13.0 11.48 11.1 335.7 0.0 -4,-6 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000027668 Mfn1 ENSMUST00000137565 ENSMUSP00000117411 TRANSLATION protein_coding stop - 3 189.0 8.0 4.33 0.0 64.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000027668 Mfn1 ENSMUST00000118286 ENSMUSP00000113251 TRANSLATION protein_coding - CCDS17296.1 2 741.0 13.0 11.48 11.1 335.7 0.0 -4,-6 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000004591 Pkn2 ENSMUST00000173830 ENSMUSP00000133691 TRANSLATION protein_coding - - 5 935.0 18.0 8.6 5.6 423.0 0.0 -4,-5 0.4067 24 19.172 MINOR ENSMUSG00000004591 Pkn2 ENSMUST00000166330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004591 Pkn2 ENSMUST00000174680 ENSMUSP00000134041 TRANSLATION protein_coding start/stop - 5 210.0 0.0 0.6 0.0 55.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000004591 Pkn2 ENSMUST00000174169 - NO_TRANSLATION retained_intron ENSMUSG00000004591 Pkn2 ENSMUST00000043812 ENSMUSP00000039566 TRANSLATION protein_coding - CCDS51084.1 1 983.0 18.0 8.6 16.7 423.0 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000004591 Pkn2 ENSMUST00000172916 - NO_TRANSLATION retained_intron ENSMUSG00000004591 Pkn2 ENSMUST00000174422 ENSMUSP00000134559 TRANSLATION protein_coding - - 5 967.0 18.0 8.6 2.8 423.0 0.0 -4,-5 0.3023 24 18.46 MINOR ENSMUSG00000004591 Pkn2 ENSMUST00000173913 ENSMUSP00000134046 TRANSLATION nonsense_mediated_decay - - 5 37.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000004591 Pkn2 ENSMUST00000172521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004591 Pkn2 ENSMUST00000197529 - NO_TRANSLATION retained_intron ENSMUSG00000004591 Pkn2 ENSMUST00000173615 ENSMUSP00000133419 TRANSLATION nonsense_mediated_decay start - 3 29.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000004591 Pkn2 ENSMUST00000200315 - NO_TRANSLATION retained_intron ENSMUSG00000004591 Pkn2 ENSMUST00000174099 - NO_TRANSLATION retained_intron ENSMUSG00000038205 Prkab2 ENSMUST00000045743 ENSMUSP00000036410 TRANSLATION protein_coding - CCDS17657.1 1 271.0 0.0 5.5 33.9 217.4 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000038205 Prkab2 ENSMUST00000198337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038205 Prkab2 ENSMUST00000130924 ENSMUSP00000116622 TRANSLATION nonsense_mediated_decay - - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038205 Prkab2 ENSMUST00000132719 - NO_TRANSLATION retained_intron ENSMUSG00000038205 Prkab2 ENSMUST00000143927 ENSMUSP00000115749 TRANSLATION nonsense_mediated_decay - - 5 179.0 0.0 3.0 0.0 123.1 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000038205 Prkab2 ENSMUST00000152731 - NO_TRANSLATION retained_intron ENSMUSG00000049230 Myef2l ENSMUST00000061419 ENSMUSP00000058811 TRANSLATION protein_coding - - 1 498.0 0.0 0.2 0.0 142.5 0.0 -4,-5 0.809 - 12.0 PRINCIPAL:1 ENSMUSG00000027886 Cfap276 ENSMUST00000138210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027886 Cfap276 ENSMUST00000029485 ENSMUSP00000029485 TRANSLATION protein_coding - CCDS51046.1 1 168.0 0.0 1.0 0.0 103.2 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000027886 Cfap276 ENSMUST00000138375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078784 Rbis ENSMUST00000186870 ENSMUSP00000139464 TRANSLATION protein_coding - - 1 81.0 0.0 0.0 0.0 106.1 0.0 -4,-7 0.0038 - 4.962 MINOR ENSMUSG00000078784 Rbis ENSMUST00000108365 ENSMUSP00000104002 TRANSLATION protein_coding - CCDS84610.1 1 139.0 0.0 0.0 0.0 123.4 0.0 1,-3 0.1622 - 6.0 MINOR ENSMUSG00000078784 Rbis ENSMUST00000185423 ENSMUSP00000139401 TRANSLATION protein_coding - - 3 58.0 0.0 0.0 3.1 56.1 0.0 -4,-7 0.0446 - 2.562 MINOR ENSMUSG00000078784 Rbis ENSMUST00000190064 - NO_TRANSLATION retained_intron ENSMUSG00000078784 Rbis ENSMUST00000185384 ENSMUSP00000139512 TRANSLATION protein_coding - CCDS79886.1 1 97.0 0.0 0.0 15.0 123.4 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000060671 Atp8b2 ENSMUST00000163354 - NO_TRANSLATION retained_intron ENSMUSG00000060671 Atp8b2 ENSMUST00000069805 ENSMUSP00000063384 TRANSLATION protein_coding - - 5 1209.0 3.0 21.08 9.0 462.3 20.0 -4,-5 0.6988 6 16.61 MINOR ENSMUSG00000060671 Atp8b2 ENSMUST00000168276 ENSMUSP00000128423 TRANSLATION protein_coding - CCDS38497.2 5 1190.0 3.0 21.245 13.6 462.3 20.0 -4,-6 1.0 6 18.4 PRINCIPAL:1 ENSMUSG00000060671 Atp8b2 ENSMUST00000171818 - NO_TRANSLATION retained_intron ENSMUSG00000060671 Atp8b2 ENSMUST00000170324 - NO_TRANSLATION retained_intron ENSMUSG00000060671 Atp8b2 ENSMUST00000170739 ENSMUSP00000127720 TRANSLATION nonsense_mediated_decay start - 5 86.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060671 Atp8b2 ENSMUST00000170696 ENSMUSP00000126142 TRANSLATION protein_coding stop - 3 128.0 0.0 3.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060671 Atp8b2 ENSMUST00000166502 ENSMUSP00000132201 TRANSLATION protein_coding start - 2 145.0 0.0 1.14 0.0 63.7 4.0 -1,-4 0.0022 - -2.0 MINOR ENSMUSG00000060671 Atp8b2 ENSMUST00000166705 - NO_TRANSLATION retained_intron ENSMUSG00000060671 Atp8b2 ENSMUST00000168880 ENSMUSP00000128726 TRANSLATION protein_coding stop - 5 112.0 0.0 3.245 0.0 102.5 4.0 -4,-6 0.0022 - -2.0 MINOR ENSMUSG00000060671 Atp8b2 ENSMUST00000163152 - NO_TRANSLATION retained_intron ENSMUSG00000060671 Atp8b2 ENSMUST00000107396 ENSMUSP00000103019 TRANSLATION protein_coding - - 5 1214.0 3.0 21.545 0.0 462.3 20.0 -4,-6 0.2581 6 15.0 MINOR ENSMUSG00000060671 Atp8b2 ENSMUST00000167257 - NO_TRANSLATION retained_intron ENSMUSG00000060671 Atp8b2 ENSMUST00000171422 ENSMUSP00000129641 TRANSLATION protein_coding stop - 3 72.0 0.0 1.25 0.0 53.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060671 Atp8b2 ENSMUST00000171941 ENSMUSP00000130545 TRANSLATION protein_coding start/stop - 3 169.0 1.0 2.79 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060671 Atp8b2 ENSMUST00000167442 - NO_TRANSLATION retained_intron ENSMUSG00000060671 Atp8b2 ENSMUST00000166347 - NO_TRANSLATION retained_intron ENSMUSG00000054988 Agtr1b ENSMUST00000068316 ENSMUSP00000068298 TRANSLATION protein_coding - CCDS17264.1 1 359.0 0.0 1.0 16.5 173.0 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048109 Rbm15 ENSMUST00000197769 - NO_TRANSLATION retained_intron ENSMUSG00000048109 Rbm15 ENSMUST00000061772 ENSMUSP00000054424 TRANSLATION protein_coding - CCDS38590.1 1 962.0 0.0 0.0 7.9 197.8 0.0 -4,-1 1.0 21 8.0 PRINCIPAL:1 ENSMUSG00000058952 Cfi ENSMUST00000200206 ENSMUSP00000142975 TRANSLATION protein_coding stop - 3 145.0 0.0 2.0 0.0 30.2 0.0 3,-2 0.0 6 -2.0 MINOR ENSMUSG00000058952 Cfi ENSMUST00000077918 ENSMUSP00000077074 TRANSLATION protein_coding - CCDS17835.1 1 603.0 15.0 9.24 0.1 339.6 0.0 3,-2 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000027893 Ahcyl1 ENSMUST00000137583 - NO_TRANSLATION retained_intron ENSMUSG00000027893 Ahcyl1 ENSMUST00000144864 - NO_TRANSLATION retained_intron ENSMUSG00000027893 Ahcyl1 ENSMUST00000138116 - NO_TRANSLATION retained_intron ENSMUSG00000027893 Ahcyl1 ENSMUST00000138091 ENSMUSP00000117909 TRANSLATION nonsense_mediated_decay start - 5 182.0 5.0 4.0 0.0 190.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000027893 Ahcyl1 ENSMUST00000029490 ENSMUSP00000029490 TRANSLATION protein_coding - CCDS38593.1 1 530.0 42.0 13.25 14.7 494.6 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000027893 Ahcyl1 ENSMUST00000151935 - NO_TRANSLATION retained_intron ENSMUSG00000027893 Ahcyl1 ENSMUST00000153530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027893 Ahcyl1 ENSMUST00000153623 ENSMUSP00000121510 TRANSLATION protein_coding stop - 3 210.0 8.0 5.0 0.0 221.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000051860 Samd7 ENSMUST00000172593 ENSMUSP00000133333 TRANSLATION nonsense_mediated_decay - - 5 102.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000051860 Samd7 ENSMUST00000174395 ENSMUSP00000133687 TRANSLATION nonsense_mediated_decay - - 2 39.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000051860 Samd7 ENSMUST00000108262 ENSMUSP00000103897 TRANSLATION protein_coding - CCDS17285.2 5 445.0 0.0 1.8 1.7 50.9 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051860 Samd7 ENSMUST00000192872 - NO_TRANSLATION retained_intron ENSMUSG00000043468 Adam30 ENSMUST00000198363 ENSMUSP00000142590 TRANSLATION protein_coding stop - 1 278.0 6.0 0.32 0.0 107.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000043468 Adam30 ENSMUST00000050342 ENSMUSP00000060505 TRANSLATION protein_coding - CCDS17660.1 - 732.0 15.0 0.72 0.1 353.7 0.0 3,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028010 Gar1 ENSMUST00000029643 ENSMUSP00000029643 TRANSLATION protein_coding - CCDS38634.1 1 231.0 0.0 2.88 0.0 134.0 0.0 -4,-6 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000028010 Gar1 ENSMUST00000143545 - NO_TRANSLATION retained_intron ENSMUSG00000028010 Gar1 ENSMUST00000134174 ENSMUSP00000115191 TRANSLATION protein_coding start - 2 79.0 0.0 1.88 0.0 48.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028010 Gar1 ENSMUST00000128441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028010 Gar1 ENSMUST00000127864 - NO_TRANSLATION retained_intron ENSMUSG00000028010 Gar1 ENSMUST00000149071 ENSMUSP00000118752 TRANSLATION protein_coding stop - 2 198.0 0.0 2.88 0.0 134.0 0.0 -4,-6 0.0192 7 -2.0 MINOR ENSMUSG00000041237 Pklr ENSMUST00000047111 ENSMUSP00000035417 TRANSLATION protein_coding - CCDS17489.1 1 574.0 41.0 11.5 5.4 644.8 0.0 -4,-5 0.7024 23 19.671 MINOR ENSMUSG00000041237 Pklr ENSMUST00000148097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041237 Pklr ENSMUST00000127058 ENSMUSP00000119392 TRANSLATION protein_coding stop - 2 72.0 9.0 2.33 0.0 75.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000041237 Pklr ENSMUST00000107482 ENSMUSP00000103106 TRANSLATION protein_coding - CCDS50957.1 1 543.0 41.0 11.5 8.9 644.8 0.0 -4,-7 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000041237 Pklr ENSMUST00000151591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074340 Ovgp1 ENSMUST00000000573 ENSMUSP00000000573 TRANSLATION protein_coding - CCDS17716.1 1 721.0 0.0 7.566 0.0 267.7 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000074340 Ovgp1 ENSMUST00000163626 ENSMUSP00000132424 TRANSLATION nonsense_mediated_decay - - 5 232.0 0.0 3.766 0.0 125.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000074340 Ovgp1 ENSMUST00000164055 - NO_TRANSLATION retained_intron ENSMUSG00000074340 Ovgp1 ENSMUST00000092878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044864 Ankrd50 ENSMUST00000094300 ENSMUSP00000091858 TRANSLATION protein_coding - - 1 467.0 0.0 0.6 0.0 98.3 0.0 -4,-5 0.0 6 3.6 ALTERNATIVE:2 ENSMUSG00000044864 Ankrd50 ENSMUST00000120875 ENSMUSP00000113349 TRANSLATION protein_coding - CCDS50897.1 1 276.0 10.0 0.0 0.0 0.0 0.0 -4,-5 0.4863 5 4.002 PRINCIPAL:2 ENSMUSG00000044864 Ankrd50 ENSMUST00000156038 ENSMUSP00000122842 TRANSLATION protein_coding start - 5 1390.0 13.0 1.0 0.0 337.0 0.0 -4,-6 0.5318 22 -2.0 MINOR ENSMUSG00000044864 Ankrd50 ENSMUST00000127837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033308 Dpyd ENSMUST00000150950 - NO_TRANSLATION retained_intron ENSMUSG00000033308 Dpyd ENSMUST00000039177 ENSMUSP00000039429 TRANSLATION protein_coding - CCDS17797.1 1 1025.0 32.0 21.25 20.0 144.0 0.0 -4,-5 1.0 29 22.0 PRINCIPAL:1 ENSMUSG00000033308 Dpyd ENSMUST00000129148 - NO_TRANSLATION retained_intron ENSMUSG00000033308 Dpyd ENSMUST00000149101 ENSMUSP00000143022 TRANSLATION protein_coding - - 3 78.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000033308 Dpyd ENSMUST00000126254 - NO_TRANSLATION retained_intron ENSMUSG00000033308 Dpyd ENSMUST00000200178 - NO_TRANSLATION retained_intron ENSMUSG00000036513 Commd2 ENSMUST00000163087 - NO_TRANSLATION retained_intron ENSMUSG00000036513 Commd2 ENSMUST00000041954 ENSMUSP00000042228 TRANSLATION nonsense_mediated_decay - - 1 50.0 0.0 1.35 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036513 Commd2 ENSMUST00000160959 ENSMUSP00000124819 TRANSLATION protein_coding - CCDS17362.1 1 199.0 0.0 4.1 30.5 66.9 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000028035 Dnajb4 ENSMUST00000134701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028035 Dnajb4 ENSMUST00000153355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028035 Dnajb4 ENSMUST00000029669 ENSMUSP00000029669 TRANSLATION protein_coding - CCDS17915.1 5 337.0 0.0 3.13 33.9 245.5 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000028035 Dnajb4 ENSMUST00000197941 ENSMUSP00000142834 TRANSLATION protein_coding stop - 3 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028035 Dnajb4 ENSMUST00000050073 ENSMUSP00000053916 TRANSLATION protein_coding - CCDS17915.1 1 337.0 0.0 3.13 33.9 245.5 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000028035 Dnajb4 ENSMUST00000196291 - NO_TRANSLATION retained_intron ENSMUSG00000028035 Dnajb4 ENSMUST00000144950 ENSMUSP00000114356 TRANSLATION protein_coding - CCDS17915.1 1 337.0 0.0 3.13 33.9 245.5 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000098207 Arl14 ENSMUST00000183126 ENSMUSP00000138370 TRANSLATION protein_coding - CCDS59645.1 - 192.0 18.0 1.0 17.9 201.9 0.0 -4,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000027900 Dram2 ENSMUST00000029507 ENSMUSP00000029507 TRANSLATION protein_coding - CCDS17724.1 1 180.0 0.0 4.83 1.1 97.7 7.0 0,-4 0.0166 2 1.514 MINOR ENSMUSG00000027900 Dram2 ENSMUST00000144746 ENSMUSP00000118821 TRANSLATION protein_coding stop - 5 27.0 0.0 0.75 0.0 0.0 1.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000027900 Dram2 ENSMUST00000129053 - NO_TRANSLATION retained_intron ENSMUSG00000027900 Dram2 ENSMUST00000151465 ENSMUSP00000117078 TRANSLATION protein_coding stop - 3 144.0 0.0 3.83 0.0 127.0 6.0 0,-4 0.0029 1 -2.0 MINOR ENSMUSG00000027900 Dram2 ENSMUST00000067630 ENSMUSP00000063510 TRANSLATION protein_coding - CCDS17725.1 1 267.0 0.0 7.66 22.0 178.5 9.0 0,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000027900 Dram2 ENSMUST00000121034 ENSMUSP00000112680 TRANSLATION protein_coding - CCDS17725.1 1 267.0 0.0 7.66 22.0 178.5 9.0 0,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000027900 Dram2 ENSMUST00000132923 ENSMUSP00000118686 TRANSLATION protein_coding stop - 3 165.0 0.0 4.58 0.0 141.7 6.0 0,-4 0.0029 1 -2.0 MINOR ENSMUSG00000027900 Dram2 ENSMUST00000135740 - NO_TRANSLATION retained_intron ENSMUSG00000027900 Dram2 ENSMUST00000134396 ENSMUSP00000119227 TRANSLATION protein_coding stop - 3 38.0 0.0 1.08 0.0 0.0 2.0 0,-4 0.0002 - -2.0 MINOR ENSMUSG00000010538 Tsacc ENSMUST00000010682 ENSMUSP00000010682 TRANSLATION protein_coding - CCDS17467.1 1 124.0 0.0 0.8 7.2 232.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000010538 Tsacc ENSMUST00000107556 ENSMUSP00000103180 TRANSLATION protein_coding - CCDS17467.1 1 124.0 0.0 0.8 7.2 232.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000010538 Tsacc ENSMUST00000123536 - NO_TRANSLATION retained_intron ENSMUSG00000027953 Slc50a1 ENSMUST00000029565 ENSMUSP00000029565 TRANSLATION protein_coding - CCDS17500.1 1 221.0 0.0 6.33 14.5 205.1 10.0 -2,-4 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027953 Slc50a1 ENSMUST00000133575 - NO_TRANSLATION retained_intron ENSMUSG00000027953 Slc50a1 ENSMUST00000130230 ENSMUSP00000123276 TRANSLATION protein_coding stop - 2 109.0 0.0 3.25 0.0 72.9 5.0 -4,-6 0.0021 - -2.0 MINOR ENSMUSG00000027953 Slc50a1 ENSMUST00000132445 - NO_TRANSLATION retained_intron ENSMUSG00000027953 Slc50a1 ENSMUST00000185119 ENSMUSP00000139128 TRANSLATION nonsense_mediated_decay - - 5 87.0 0.0 1.5 0.0 44.8 1.0 -2,-3 0.0015 - -2.0 MINOR ENSMUSG00000027953 Slc50a1 ENSMUST00000130690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027953 Slc50a1 ENSMUST00000107460 ENSMUSP00000103084 TRANSLATION protein_coding - - 5 167.0 0.0 4.5 5.3 171.5 7.0 -2,-5 0.1044 1 7.6 MINOR ENSMUSG00000027953 Slc50a1 ENSMUST00000144777 - NO_TRANSLATION retained_intron ENSMUSG00000027953 Slc50a1 ENSMUST00000148095 - NO_TRANSLATION retained_intron ENSMUSG00000028042 Zbtb7b ENSMUST00000139094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028042 Zbtb7b ENSMUST00000029677 ENSMUSP00000029677 TRANSLATION protein_coding - CCDS17504.1 1 544.0 15.0 3.13 8.7 156.7 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000028042 Zbtb7b ENSMUST00000142119 ENSMUSP00000115425 TRANSLATION protein_coding stop - 3 112.0 0.0 1.93 0.0 80.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028042 Zbtb7b ENSMUST00000107435 ENSMUSP00000103058 TRANSLATION protein_coding - CCDS17504.1 1 544.0 15.0 3.13 8.7 156.7 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000028042 Zbtb7b ENSMUST00000148361 ENSMUSP00000121498 TRANSLATION protein_coding stop - 2 102.0 0.0 1.6 0.0 62.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028042 Zbtb7b ENSMUST00000107432 ENSMUSP00000103055 TRANSLATION protein_coding - CCDS17504.1 1 544.0 15.0 3.13 8.7 156.7 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000028042 Zbtb7b ENSMUST00000126027 ENSMUSP00000123348 TRANSLATION protein_coding stop - 2 124.0 0.0 2.33 0.0 91.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028042 Zbtb7b ENSMUST00000124783 ENSMUSP00000120641 TRANSLATION protein_coding stop - 3 29.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028042 Zbtb7b ENSMUST00000107433 ENSMUSP00000103056 TRANSLATION protein_coding - CCDS17504.1 1 544.0 15.0 3.13 8.7 156.7 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000028199 Cryz ENSMUST00000194876 ENSMUSP00000142101 TRANSLATION protein_coding stop - 1 301.0 22.0 9.07 0.0 99.6 0.0 -4,-7 0.0229 14 -2.0 MINOR ENSMUSG00000028199 Cryz ENSMUST00000140644 ENSMUSP00000115146 TRANSLATION protein_coding stop - 3 97.0 1.0 2.83 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000028199 Cryz ENSMUST00000192462 ENSMUSP00000142105 TRANSLATION protein_coding - CCDS17927.1 1 331.0 25.0 9.82 25.2 99.6 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000028199 Cryz ENSMUST00000155232 ENSMUSP00000118449 TRANSLATION protein_coding stop - 3 173.0 9.0 5.32 0.0 0.0 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000028199 Cryz ENSMUST00000135723 ENSMUSP00000143311 TRANSLATION nonsense_mediated_decay - - 5 56.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028199 Cryz ENSMUST00000184537 ENSMUSP00000139387 TRANSLATION nonsense_mediated_decay - - 1 223.0 14.0 6.52 0.0 42.6 0.0 -4,-7 0.0 10 -2.0 MINOR ENSMUSG00000028199 Cryz ENSMUST00000144764 ENSMUSP00000121269 TRANSLATION protein_coding stop - 3 152.0 3.0 4.49 0.0 0.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000028199 Cryz ENSMUST00000029850 ENSMUSP00000029850 TRANSLATION protein_coding - CCDS17927.1 1 331.0 25.0 9.82 25.2 99.6 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000028199 Cryz ENSMUST00000155385 ENSMUSP00000122619 TRANSLATION protein_coding stop - 5 137.0 2.0 3.83 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000028199 Cryz ENSMUST00000195103 ENSMUSP00000141246 TRANSLATION protein_coding start/stop - 5 171.0 14.0 5.0 0.0 99.0 0.0 -4,-5 0.0037 9 -2.0 MINOR ENSMUSG00000028199 Cryz ENSMUST00000195292 - NO_TRANSLATION retained_intron ENSMUSG00000019338 Zfp687 ENSMUST00000126222 - NO_TRANSLATION retained_intron ENSMUSG00000019338 Zfp687 ENSMUST00000149747 ENSMUSP00000116053 TRANSLATION protein_coding stop - 2 163.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019338 Zfp687 ENSMUST00000137799 ENSMUSP00000123335 TRANSLATION nonsense_mediated_decay - - 1 786.0 15.0 0.6 0.0 0.0 0.0 -4,-5 0.0069 9 -2.0 MINOR ENSMUSG00000019338 Zfp687 ENSMUST00000019482 ENSMUSP00000019482 TRANSLATION protein_coding - CCDS17600.1 1 1237.0 33.0 2.871 2.6 87.9 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000019338 Zfp687 ENSMUST00000146169 - NO_TRANSLATION retained_intron ENSMUSG00000019338 Zfp687 ENSMUST00000147022 - NO_TRANSLATION retained_intron ENSMUSG00000019338 Zfp687 ENSMUST00000132195 ENSMUSP00000117308 TRANSLATION protein_coding stop - 2 206.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000019338 Zfp687 ENSMUST00000128438 ENSMUSP00000119354 TRANSLATION protein_coding stop - 3 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027997 Casp6 ENSMUST00000029626 ENSMUSP00000029626 TRANSLATION protein_coding - CCDS17838.1 1 276.0 4.0 4.449 4.8 169.0 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000027997 Casp6 ENSMUST00000137314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027997 Casp6 ENSMUST00000152622 - NO_TRANSLATION retained_intron ENSMUSG00000027997 Casp6 ENSMUST00000197175 - NO_TRANSLATION retained_intron ENSMUSG00000025437 Usp33 ENSMUST00000196811 - NO_TRANSLATION retained_intron ENSMUSG00000025437 Usp33 ENSMUST00000198596 - NO_TRANSLATION retained_intron ENSMUSG00000025437 Usp33 ENSMUST00000142969 - NO_TRANSLATION retained_intron ENSMUSG00000025437 Usp33 ENSMUST00000117492 ENSMUSP00000113265 TRANSLATION protein_coding - CCDS57261.1 1 901.0 14.0 12.24 9.2 359.2 0.0 -4,-5 0.9864 8 16.598 ALTERNATIVE:1 ENSMUSG00000025437 Usp33 ENSMUST00000138575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025437 Usp33 ENSMUST00000198950 - NO_TRANSLATION retained_intron ENSMUSG00000025437 Usp33 ENSMUST00000197600 ENSMUSP00000143062 TRANSLATION nonsense_mediated_decay start - 3 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025437 Usp33 ENSMUST00000026507 ENSMUSP00000026507 TRANSLATION protein_coding - CCDS80064.1 1 897.0 14.0 12.24 7.2 355.9 0.0 -4,-5 0.8956 7 15.384 MINOR ENSMUSG00000025437 Usp33 ENSMUST00000197748 ENSMUSP00000142708 TRANSLATION protein_coding - CCDS17918.1 1 909.0 14.0 12.405 9.4 359.1 0.0 -4,-5 1.0 8 17.0 PRINCIPAL:4 ENSMUSG00000025437 Usp33 ENSMUST00000197325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025437 Usp33 ENSMUST00000123237 ENSMUSP00000117590 TRANSLATION nonsense_mediated_decay - - 1 91.0 6.0 1.55 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028256 Odf2l ENSMUST00000198764 ENSMUSP00000142571 TRANSLATION protein_coding start/stop - 3 255.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0236 - -2.0 MINOR ENSMUSG00000028256 Odf2l ENSMUST00000197657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028256 Odf2l ENSMUST00000199435 - NO_TRANSLATION retained_intron ENSMUSG00000028256 Odf2l ENSMUST00000098539 ENSMUSP00000096141 TRANSLATION protein_coding - CCDS17891.1 1 589.0 0.0 0.0 5.4 0.0 0.0 -4,-5 0.8535 - 1.726 ALTERNATIVE:1 ENSMUSG00000028256 Odf2l ENSMUST00000195926 ENSMUSP00000142932 TRANSLATION protein_coding start/stop - 5 155.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0125 - -2.0 MINOR ENSMUSG00000028256 Odf2l ENSMUST00000098538 ENSMUSP00000096140 TRANSLATION protein_coding - CCDS51087.1 1 642.0 0.0 0.0 6.1 0.0 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:4 ENSMUSG00000028256 Odf2l ENSMUST00000198808 - NO_TRANSLATION retained_intron ENSMUSG00000028256 Odf2l ENSMUST00000106192 ENSMUSP00000101798 TRANSLATION protein_coding - CCDS17891.1 5 589.0 0.0 0.0 5.4 0.0 0.0 -4,-5 0.8535 - 1.726 ALTERNATIVE:1 ENSMUSG00000028256 Odf2l ENSMUST00000200014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028256 Odf2l ENSMUST00000199124 ENSMUSP00000142780 TRANSLATION protein_coding stop - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0118 - -2.0 MINOR ENSMUSG00000028256 Odf2l ENSMUST00000196552 ENSMUSP00000143025 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0139 - -2.0 MINOR ENSMUSG00000028256 Odf2l ENSMUST00000196426 - NO_TRANSLATION retained_intron ENSMUSG00000028256 Odf2l ENSMUST00000029920 ENSMUSP00000029920 TRANSLATION protein_coding - CCDS51088.1 1 546.0 0.0 0.0 3.5 0.0 0.0 -4,-5 0.6174 - 0.98 ALTERNATIVE:2 ENSMUSG00000028256 Odf2l ENSMUST00000196857 ENSMUSP00000143513 TRANSLATION protein_coding stop - 5 203.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0171 - -2.0 MINOR ENSMUSG00000028256 Odf2l ENSMUST00000199045 - NO_TRANSLATION retained_intron ENSMUSG00000028256 Odf2l ENSMUST00000200353 ENSMUSP00000143183 TRANSLATION nonsense_mediated_decay start - 3 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0218 - -2.0 MINOR ENSMUSG00000028256 Odf2l ENSMUST00000196898 - NO_TRANSLATION retained_intron ENSMUSG00000028256 Odf2l ENSMUST00000199307 - NO_TRANSLATION retained_intron ENSMUSG00000028187 Rpf1 ENSMUST00000199174 ENSMUSP00000142765 TRANSLATION protein_coding start - 2 147.0 0.0 3.0 0.0 78.0 0.0 -4,-7 0.0006 - -2.0 MINOR ENSMUSG00000028187 Rpf1 ENSMUST00000199079 ENSMUSP00000143279 TRANSLATION protein_coding - CCDS80049.1 1 212.0 0.0 3.848 0.0 0.0 0.0 -4,-5 0.005 2 0.0 MINOR ENSMUSG00000028187 Rpf1 ENSMUST00000029838 ENSMUSP00000029838 TRANSLATION protein_coding - CCDS51089.1 1 349.0 0.0 6.9 7.3 93.1 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000028187 Rpf1 ENSMUST00000196909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028187 Rpf1 ENSMUST00000200583 - NO_TRANSLATION retained_intron ENSMUSG00000090581 Vmn2r6 ENSMUST00000165012 ENSMUSP00000131831 TRANSLATION protein_coding - CCDS50923.1 5 824.0 0.0 2.94 0.1 499.1 9.0 -4,-5 0.4555 - 11.208 MINOR ENSMUSG00000090581 Vmn2r6 ENSMUST00000176481 ENSMUSP00000135148 TRANSLATION protein_coding - - 5 913.0 0.0 3.27 1.1 501.3 9.0 3,-2 0.9354 - 13.0 PRINCIPAL:1 ENSMUSG00000027669 Gnb4 ENSMUST00000143588 - NO_TRANSLATION retained_intron ENSMUSG00000027669 Gnb4 ENSMUST00000184130 ENSMUSP00000138886 TRANSLATION nonsense_mediated_decay - - 1 83.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027669 Gnb4 ENSMUST00000192116 - NO_TRANSLATION retained_intron ENSMUSG00000027669 Gnb4 ENSMUST00000108234 ENSMUSP00000103869 TRANSLATION protein_coding - CCDS17297.1 1 340.0 0.0 7.83 36.9 156.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000027669 Gnb4 ENSMUST00000144292 - NO_TRANSLATION retained_intron ENSMUSG00000027669 Gnb4 ENSMUST00000193050 ENSMUSP00000141196 TRANSLATION protein_coding - - 5 73.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000027669 Gnb4 ENSMUST00000155737 ENSMUSP00000121127 TRANSLATION protein_coding - CCDS17297.1 1 340.0 0.0 7.83 36.9 156.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000027669 Gnb4 ENSMUST00000152901 - NO_TRANSLATION retained_intron ENSMUSG00000028104 Polr3gl ENSMUST00000091924 ENSMUSP00000089544 TRANSLATION protein_coding - CCDS17641.1 1 218.0 0.0 2.95 10.4 131.3 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000028104 Polr3gl ENSMUST00000131641 - NO_TRANSLATION retained_intron ENSMUSG00000028104 Polr3gl ENSMUST00000145001 ENSMUSP00000118943 TRANSLATION protein_coding - CCDS79982.1 3 148.0 0.0 1.4 1.4 68.6 0.0 -4,-7 0.0179 - 5.217 MINOR ENSMUSG00000028104 Polr3gl ENSMUST00000141579 - NO_TRANSLATION retained_intron ENSMUSG00000027890 Gstm4 ENSMUST00000106670 ENSMUSP00000102281 TRANSLATION protein_coding - CCDS51045.1 3 184.0 7.0 5.25 2.8 97.0 0.0 -4,-5 0.0181 6 11.2 MINOR ENSMUSG00000027890 Gstm4 ENSMUST00000029489 ENSMUSP00000029489 TRANSLATION protein_coding - CCDS17748.1 1 218.0 10.0 6.5 31.9 139.2 0.0 -4,-7 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000027890 Gstm4 ENSMUST00000178808 ENSMUSP00000136643 TRANSLATION protein_coding - CCDS51045.1 1 184.0 7.0 5.25 2.8 97.0 0.0 -4,-5 0.0181 6 11.2 MINOR ENSMUSG00000068762 Gstm6 ENSMUST00000106683 ENSMUSP00000102294 TRANSLATION protein_coding - - 3 123.0 2.0 3.5 0.0 60.8 0.0 -4,-5 0.0 2 2.202 MINOR ENSMUSG00000068762 Gstm6 ENSMUST00000106680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068762 Gstm6 ENSMUST00000106681 ENSMUSP00000102292 TRANSLATION protein_coding stop - 2 154.0 7.0 4.5 0.0 103.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000068762 Gstm6 ENSMUST00000155926 ENSMUSP00000139500 TRANSLATION nonsense_mediated_decay - - 3 52.0 7.0 1.5 0.0 41.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000068762 Gstm6 ENSMUST00000106685 ENSMUSP00000102296 TRANSLATION protein_coding - CCDS38596.1 1 218.0 10.0 6.5 31.9 135.2 0.0 -4,-6 1.0 6 21.4 PRINCIPAL:1 ENSMUSG00000068762 Gstm6 ENSMUST00000106684 ENSMUSP00000102295 TRANSLATION protein_coding - - 1 232.0 10.0 6.8 0.0 131.7 0.0 -4,-6 0.0264 5 17.79 MINOR ENSMUSG00000033161 Atp1a1 ENSMUST00000036493 ENSMUSP00000039657 TRANSLATION protein_coding - CCDS17683.1 1 1023.0 11.0 20.88 33.8 479.9 0.0 -4,-5 1.0 33 22.0 PRINCIPAL:1 ENSMUSG00000033161 Atp1a1 ENSMUST00000130649 - NO_TRANSLATION retained_intron ENSMUSG00000033161 Atp1a1 ENSMUST00000136340 - NO_TRANSLATION retained_intron ENSMUSG00000027947 Il6ra ENSMUST00000197679 ENSMUSP00000143541 TRANSLATION protein_coding - CCDS79954.1 1 459.0 0.0 4.8 0.1 99.9 1.0 3,-2 0.7892 3 8.0 ALTERNATIVE:2 ENSMUSG00000027947 Il6ra ENSMUST00000029559 ENSMUSP00000029559 TRANSLATION protein_coding - CCDS38496.1 1 460.0 0.0 4.8 0.1 99.9 1.0 3,-2 1.0 3 8.0 PRINCIPAL:4 ENSMUSG00000103523 2210017I01Rik ENSMUST00000195278 ENSMUSP00000141278 TRANSLATION protein_coding - - 1 95.0 0.0 0.0 1.0 24.7 0.0 -4,-5 0.706 - 6.0 PRINCIPAL:1 ENSMUSG00000042737 Dpm3 ENSMUST00000137975 - NO_TRANSLATION retained_intron ENSMUSG00000042737 Dpm3 ENSMUST00000107462 ENSMUSP00000103086 TRANSLATION protein_coding - CCDS38487.1 3 92.0 0.0 1.0 32.9 105.7 1.0 3,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000042737 Dpm3 ENSMUST00000040824 ENSMUSP00000040860 TRANSLATION protein_coding - CCDS38487.1 1 92.0 0.0 1.0 32.9 105.7 1.0 3,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000090817 Hsd3b9 ENSMUST00000188356 ENSMUSP00000139967 TRANSLATION protein_coding stop - 2 191.0 28.0 3.0 0.0 227.6 0.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000090817 Hsd3b9 ENSMUST00000167753 ENSMUSP00000127882 TRANSLATION protein_coding - - 1 373.0 28.0 4.0 4.5 348.4 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000001418 Glmp ENSMUST00000177005 ENSMUSP00000135398 TRANSLATION protein_coding - CCDS17469.1 1 404.0 0.0 6.25 7.2 339.4 3.0 3,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000001418 Glmp ENSMUST00000152801 - NO_TRANSLATION retained_intron ENSMUSG00000001418 Glmp ENSMUST00000154381 ENSMUSP00000134809 TRANSLATION protein_coding start - 2 77.0 0.0 2.25 0.0 43.2 3.0 -4,-5 0.0001 - -2.0 MINOR ENSMUSG00000001418 Glmp ENSMUST00000176425 ENSMUSP00000135575 TRANSLATION protein_coding - - 5 319.0 0.0 5.25 2.0 245.8 3.0 2,-1 0.0672 1 4.708 MINOR ENSMUSG00000001418 Glmp ENSMUST00000131666 ENSMUSP00000120235 TRANSLATION nonsense_mediated_decay - - 3 70.0 0.0 0.0 0.0 0.0 0.0 2,-1 0.0 - -2.0 MINOR ENSMUSG00000001418 Glmp ENSMUST00000153716 - NO_TRANSLATION retained_intron ENSMUSG00000001418 Glmp ENSMUST00000176519 ENSMUSP00000135263 TRANSLATION protein_coding - - 5 148.0 0.0 1.0 0.0 74.9 0.0 3,-1 0.0016 2 0.0 MINOR ENSMUSG00000001418 Glmp ENSMUST00000140039 - NO_TRANSLATION retained_intron ENSMUSG00000001418 Glmp ENSMUST00000193646 - NO_TRANSLATION retained_intron ENSMUSG00000001418 Glmp ENSMUST00000001454 ENSMUSP00000001454 TRANSLATION protein_coding - - 5 338.0 0.0 5.25 1.2 200.7 3.0 3,-1 0.046 3 4.066 MINOR ENSMUSG00000028127 Abcd3 ENSMUST00000197662 ENSMUSP00000143487 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000028127 Abcd3 ENSMUST00000029770 ENSMUSP00000029770 TRANSLATION protein_coding - CCDS17806.1 1 659.0 13.0 9.66175 25.5 409.3 3.0 -2,2 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000028127 Abcd3 ENSMUST00000195965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028127 Abcd3 ENSMUST00000196340 - NO_TRANSLATION retained_intron ENSMUSG00000028127 Abcd3 ENSMUST00000197383 ENSMUSP00000142387 TRANSLATION protein_coding - - 5 549.0 13.0 9.08675 0.0 328.4 3.0 -2,2 0.0151 10 11.994 MINOR ENSMUSG00000028127 Abcd3 ENSMUST00000199593 - NO_TRANSLATION retained_intron ENSMUSG00000027692 Tnik ENSMUST00000160934 ENSMUSP00000123859 TRANSLATION nonsense_mediated_decay - - 1 227.0 18.0 5.9 0.0 169.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027692 Tnik ENSMUST00000159733 - NO_TRANSLATION retained_intron ENSMUSG00000027692 Tnik ENSMUST00000160518 ENSMUSP00000124011 TRANSLATION protein_coding - - 5 1331.0 18.0 15.0 12.0 422.7 0.0 -4,-5 0.8008 19 16.896 MINOR ENSMUSG00000027692 Tnik ENSMUST00000193721 - NO_TRANSLATION retained_intron ENSMUSG00000027692 Tnik ENSMUST00000161234 - NO_TRANSLATION retained_intron ENSMUSG00000027692 Tnik ENSMUST00000161214 - NO_TRANSLATION retained_intron ENSMUSG00000027692 Tnik ENSMUST00000162037 - NO_TRANSLATION retained_intron ENSMUSG00000027692 Tnik ENSMUST00000162777 ENSMUSP00000124726 TRANSLATION protein_coding - - 5 1297.0 18.0 15.0 1.0 422.7 0.0 -4,-5 0.3335 17 14.0 MINOR ENSMUSG00000027692 Tnik ENSMUST00000162225 - NO_TRANSLATION retained_intron ENSMUSG00000027692 Tnik ENSMUST00000159308 ENSMUSP00000125466 TRANSLATION protein_coding - - 5 1276.0 18.0 15.0 1.0 422.7 0.0 -4,-5 0.3006 16 14.0 MINOR ENSMUSG00000027692 Tnik ENSMUST00000161423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027692 Tnik ENSMUST00000160307 ENSMUSP00000125081 TRANSLATION protein_coding - CCDS50877.1 1 1360.0 18.0 15.0 14.0 422.7 0.0 -4,-5 0.9615 20 17.42 ALTERNATIVE:1 ENSMUSG00000027692 Tnik ENSMUST00000161964 ENSMUSP00000125411 TRANSLATION protein_coding - - 5 1268.0 18.0 15.0 1.0 422.7 0.0 -4,-5 0.2977 16 14.0 MINOR ENSMUSG00000027692 Tnik ENSMUST00000192205 - NO_TRANSLATION retained_intron ENSMUSG00000027692 Tnik ENSMUST00000159236 ENSMUSP00000124681 TRANSLATION protein_coding - CCDS50879.1 1 1323.0 18.0 15.0 16.2 422.7 0.0 -4,-5 1.0 19 18.0 ALTERNATIVE:1 ENSMUSG00000027692 Tnik ENSMUST00000195094 - NO_TRANSLATION retained_intron ENSMUSG00000027692 Tnik ENSMUST00000159680 ENSMUSP00000124876 TRANSLATION protein_coding - CCDS50878.1 1 1352.0 18.0 15.0 16.0 422.7 0.0 -4,-5 0.9883 20 17.948 PRINCIPAL:4 ENSMUSG00000027692 Tnik ENSMUST00000162485 ENSMUSP00000124387 TRANSLATION protein_coding - - 5 1305.0 18.0 15.0 1.0 422.7 0.0 -4,-5 0.3377 17 14.0 MINOR ENSMUSG00000074591 Ankub1 ENSMUST00000197088 ENSMUSP00000142589 TRANSLATION protein_coding - - 5 500.0 0.0 4.41 1.9 54.7 0.0 -4,-5 0.3294 - 12.297 MINOR ENSMUSG00000074591 Ankub1 ENSMUST00000200665 ENSMUSP00000142649 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074591 Ankub1 ENSMUST00000238789 ENSMUSP00000159008 TRANSLATION protein_coding - - - 542.0 0.0 4.41 10.1 54.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074591 Ankub1 ENSMUST00000099091 ENSMUSP00000096689 TRANSLATION protein_coding - CCDS17363.1 1 192.0 0.0 4.41 0.0 21.5 0.0 -4,-5 0.1039 - 8.358 MINOR ENSMUSG00000058135 Gstm1 ENSMUST00000004140 ENSMUSP00000004140 TRANSLATION protein_coding - CCDS17747.1 1 218.0 10.0 6.5 31.9 128.3 0.0 -4,-7 1.0 13 21.7 PRINCIPAL:1 ENSMUSG00000058135 Gstm1 ENSMUST00000126593 ENSMUSP00000118874 TRANSLATION protein_coding - - 3 244.0 10.0 6.65 0.0 124.5 0.0 -4,-7 0.0243 13 17.772 MINOR ENSMUSG00000058135 Gstm1 ENSMUST00000153314 ENSMUSP00000123481 TRANSLATION protein_coding start - 5 194.0 4.0 4.782 0.0 82.0 0.0 -4,-5 0.0008 9 -2.0 MINOR ENSMUSG00000058135 Gstm1 ENSMUST00000198532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002428 Hltf ENSMUST00000143005 ENSMUSP00000116570 TRANSLATION nonsense_mediated_decay - - 5 628.0 0.0 4.35 0.0 236.1 0.0 -4,-7 0.0006 9 -2.0 MINOR ENSMUSG00000002428 Hltf ENSMUST00000155635 - NO_TRANSLATION retained_intron ENSMUSG00000002428 Hltf ENSMUST00000128127 - NO_TRANSLATION retained_intron ENSMUSG00000002428 Hltf ENSMUST00000002502 ENSMUSP00000002502 TRANSLATION protein_coding - CCDS17261.1 1 1003.0 8.0 9.805 8.5 419.1 0.0 -4,-7 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000002428 Hltf ENSMUST00000145853 ENSMUSP00000118775 TRANSLATION nonsense_mediated_decay - - 1 566.0 0.0 4.15 0.0 233.8 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000002428 Hltf ENSMUST00000154233 - NO_TRANSLATION retained_intron ENSMUSG00000070471 Erich6 ENSMUST00000041115 ENSMUSP00000040882 TRANSLATION protein_coding - CCDS50914.1 5 713.0 0.0 1.3 0.0 214.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027882 Stxbp3 ENSMUST00000106596 ENSMUSP00000102206 TRANSLATION protein_coding - - 2 101.0 0.0 2.5 0.0 52.5 0.0 -4,-7 0.0 4 0.0 MINOR ENSMUSG00000027882 Stxbp3 ENSMUST00000124903 - NO_TRANSLATION retained_intron ENSMUSG00000027882 Stxbp3 ENSMUST00000102621 ENSMUSP00000099681 TRANSLATION protein_coding - CCDS17768.1 1 592.0 0.0 14.135 14.7 408.7 0.0 -4,-7 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000027882 Stxbp3 ENSMUST00000196679 ENSMUSP00000142785 TRANSLATION protein_coding start/stop - 3 236.0 0.0 6.75 0.0 164.4 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000027882 Stxbp3 ENSMUST00000124782 - NO_TRANSLATION retained_intron ENSMUSG00000027882 Stxbp3 ENSMUST00000150010 - NO_TRANSLATION retained_intron ENSMUSG00000027882 Stxbp3 ENSMUST00000200035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027882 Stxbp3 ENSMUST00000138552 ENSMUSP00000142860 TRANSLATION protein_coding - - 1 146.0 0.0 2.435 0.0 52.5 0.0 -4,-7 0.0 4 0.0 MINOR ENSMUSG00000027777 Schip1 ENSMUST00000192555 ENSMUSP00000142090 TRANSLATION protein_coding stop - 5 388.0 0.0 1.75 0.0 231.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000027777 Schip1 ENSMUST00000029346 ENSMUSP00000029346 TRANSLATION protein_coding - CCDS50926.1 1 484.0 0.0 4.0 2.0 366.1 0.0 -4,-5 0.4369 3 12.2 MINOR ENSMUSG00000027777 Schip1 ENSMUST00000182532 ENSMUSP00000138245 TRANSLATION protein_coding - CCDS71249.1 1 456.0 0.0 4.0 2.0 366.1 0.0 -4,-6 0.4365 3 12.2 MINOR ENSMUSG00000027777 Schip1 ENSMUST00000182719 ENSMUSP00000138207 TRANSLATION protein_coding - CCDS71249.1 1 456.0 0.0 4.0 2.0 366.1 0.0 -4,-6 0.4365 3 12.2 MINOR ENSMUSG00000027777 Schip1 ENSMUST00000182997 ENSMUSP00000138241 TRANSLATION protein_coding - - 1 261.0 0.0 4.0 15.2 366.1 0.0 -4,-5 0.7451 2 14.856 MINOR ENSMUSG00000027777 Schip1 ENSMUST00000182360 - NO_TRANSLATION retained_intron ENSMUSG00000027777 Schip1 ENSMUST00000170788 ENSMUSP00000126443 TRANSLATION protein_coding - CCDS50929.1 1 244.0 0.0 4.0 20.9 366.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000027777 Schip1 ENSMUST00000169909 ENSMUSP00000129152 TRANSLATION protein_coding - CCDS50927.1 1 256.0 0.0 4.0 1.0 366.1 0.0 -4,-5 0.3369 2 12.0 MINOR ENSMUSG00000028273 Pdlim5 ENSMUST00000170361 ENSMUSP00000128752 TRANSLATION protein_coding - CCDS38656.1 5 239.0 0.0 3.6 10.6 82.1 0.0 -4,-7 0.4572 16 2.556 MINOR ENSMUSG00000028273 Pdlim5 ENSMUST00000200043 ENSMUSP00000143343 TRANSLATION protein_coding - CCDS80036.1 1 526.0 23.0 7.49 0.0 228.8 0.0 -4,-7 0.135 20 14.0 MINOR ENSMUSG00000028273 Pdlim5 ENSMUST00000090134 ENSMUSP00000087595 TRANSLATION protein_coding - CCDS57258.1 1 214.0 0.0 3.798 18.8 81.1 0.0 -4,-7 0.7474 15 4.4 MINOR ENSMUSG00000028273 Pdlim5 ENSMUST00000029941 ENSMUSP00000029941 TRANSLATION protein_coding - CCDS17875.1 1 591.0 23.0 7.49 9.6 228.8 0.0 -4,-7 1.0 22 15.932 PRINCIPAL:2 ENSMUSG00000028273 Pdlim5 ENSMUST00000196220 ENSMUSP00000142460 TRANSLATION protein_coding - CCDS80037.1 1 574.0 23.0 7.49 0.0 228.8 0.0 -4,-7 0.189 22 14.0 MINOR ENSMUSG00000028273 Pdlim5 ENSMUST00000168967 ENSMUSP00000132647 TRANSLATION protein_coding - CCDS80039.1 1 234.0 0.0 3.6 13.3 82.6 0.0 -4,-7 0.5908 16 3.164 MINOR ENSMUSG00000028273 Pdlim5 ENSMUST00000196908 ENSMUSP00000143098 TRANSLATION protein_coding - CCDS17876.1 1 337.0 0.0 3.6 5.7 83.2 0.0 -4,-7 0.1894 18 1.456 MINOR ENSMUSG00000028273 Pdlim5 ENSMUST00000197808 ENSMUSP00000142790 TRANSLATION protein_coding start/stop - 3 253.0 6.0 1.85 0.0 30.0 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000028273 Pdlim5 ENSMUST00000196050 - NO_TRANSLATION retained_intron ENSMUSG00000028273 Pdlim5 ENSMUST00000198381 ENSMUSP00000142899 TRANSLATION protein_coding - CCDS80035.1 5 482.0 23.0 7.49 8.4 228.8 0.0 -4,-7 0.7168 20 15.664 ALTERNATIVE:1 ENSMUSG00000028273 Pdlim5 ENSMUST00000200650 ENSMUSP00000143762 TRANSLATION protein_coding start/stop - 5 223.0 8.0 2.35 0.0 45.6 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000028273 Pdlim5 ENSMUST00000195975 ENSMUSP00000142737 TRANSLATION protein_coding - CCDS80038.1 1 614.0 23.0 7.49 4.3 228.8 0.0 -4,-7 0.4816 22 14.74 MINOR ENSMUSG00000053897 Slc39a8 ENSMUST00000180196 ENSMUSP00000136634 TRANSLATION protein_coding - CCDS17859.1 5 462.0 0.0 3.66 8.5 247.9 2.0 3,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053897 Slc39a8 ENSMUST00000139953 - NO_TRANSLATION retained_intron ENSMUSG00000053897 Slc39a8 ENSMUST00000167390 ENSMUSP00000128245 TRANSLATION protein_coding - CCDS17859.1 5 462.0 0.0 3.66 8.5 247.9 2.0 3,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053897 Slc39a8 ENSMUST00000081978 ENSMUSP00000080640 TRANSLATION protein_coding - CCDS17859.1 1 462.0 0.0 3.66 8.5 247.9 2.0 3,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053897 Slc39a8 ENSMUST00000029810 ENSMUSP00000029810 TRANSLATION protein_coding - CCDS17859.1 1 462.0 0.0 3.66 8.5 247.9 2.0 3,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053897 Slc39a8 ENSMUST00000133810 - NO_TRANSLATION retained_intron ENSMUSG00000075700 Selenot ENSMUST00000107924 ENSMUSP00000103557 TRANSLATION protein_coding - CCDS38437.1 1 195.0 0.0 2.8 12.2 56.8 0.0 3,-3 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000075700 Selenot ENSMUST00000125815 - NO_TRANSLATION retained_intron ENSMUSG00000027938 Creb3l4 ENSMUST00000107369 ENSMUSP00000102992 TRANSLATION protein_coding - CCDS17524.1 1 370.0 0.0 3.7 0.4 44.9 1.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000027938 Creb3l4 ENSMUST00000029547 ENSMUSP00000029547 TRANSLATION protein_coding - CCDS17524.1 1 370.0 0.0 3.7 0.4 44.9 1.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000056260 Lrif1 ENSMUST00000127003 ENSMUSP00000114163 TRANSLATION nonsense_mediated_decay - - 1 539.0 0.0 0.0 0.1 685.3 0.0 -4,-5 0.0445 7 -2.0 MINOR ENSMUSG00000056260 Lrif1 ENSMUST00000130105 ENSMUSP00000115110 TRANSLATION protein_coding stop - 2 178.0 0.0 0.0 0.0 267.5 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000056260 Lrif1 ENSMUST00000150888 - NO_TRANSLATION retained_intron ENSMUSG00000056260 Lrif1 ENSMUST00000106737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056260 Lrif1 ENSMUST00000098750 ENSMUSP00000096346 TRANSLATION protein_coding - CCDS17726.1 5 755.0 0.0 0.2 0.1 960.5 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000056260 Lrif1 ENSMUST00000131330 - NO_TRANSLATION retained_intron ENSMUSG00000056260 Lrif1 ENSMUST00000106736 ENSMUSP00000102347 TRANSLATION protein_coding - CCDS17727.1 1 237.0 0.0 0.2 6.0 242.5 0.0 -4,-5 0.8754 2 8.0 MINOR ENSMUSG00000056260 Lrif1 ENSMUST00000154973 ENSMUSP00000120350 TRANSLATION protein_coding stop - 3 124.0 0.0 0.0 0.0 186.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056260 Lrif1 ENSMUST00000150513 ENSMUSP00000119815 TRANSLATION protein_coding stop - 3 129.0 0.0 0.0 0.0 191.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056260 Lrif1 ENSMUST00000122928 - NO_TRANSLATION retained_intron ENSMUSG00000056260 Lrif1 ENSMUST00000098751 ENSMUSP00000096347 TRANSLATION protein_coding - CCDS38586.1 2 257.0 0.0 0.2 0.4 249.8 0.0 -4,-7 0.1939 2 6.0 MINOR ENSMUSG00000056260 Lrif1 ENSMUST00000156544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028051 Hcn3 ENSMUST00000133368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028051 Hcn3 ENSMUST00000132156 - NO_TRANSLATION retained_intron ENSMUSG00000028051 Hcn3 ENSMUST00000127654 - NO_TRANSLATION retained_intron ENSMUSG00000028051 Hcn3 ENSMUST00000029686 ENSMUSP00000029686 TRANSLATION protein_coding - CCDS17490.1 1 779.0 12.0 6.8 9.8 206.8 0.0 -4,-6 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000050150 Slc9b1 ENSMUST00000160460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050150 Slc9b1 ENSMUST00000159276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050150 Slc9b1 ENSMUST00000162767 - NO_TRANSLATION retained_intron ENSMUSG00000050150 Slc9b1 ENSMUST00000159658 ENSMUSP00000124452 TRANSLATION protein_coding stop - 2 144.0 0.0 0.0 0.0 0.0 4.0 -4,-5 0.004 1 -2.0 MINOR ENSMUSG00000050150 Slc9b1 ENSMUST00000160047 - NO_TRANSLATION retained_intron ENSMUSG00000050150 Slc9b1 ENSMUST00000161417 ENSMUSP00000125203 TRANSLATION nonsense_mediated_decay start - 5 88.0 0.0 2.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000050150 Slc9b1 ENSMUST00000160941 - NO_TRANSLATION retained_intron ENSMUSG00000050150 Slc9b1 ENSMUST00000161506 - NO_TRANSLATION retained_intron ENSMUSG00000050150 Slc9b1 ENSMUST00000078568 ENSMUSP00000077644 TRANSLATION protein_coding - CCDS17855.2 1 565.0 0.0 10.6 0.0 100.0 10.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000048416 Mlf1 ENSMUST00000126628 ENSMUSP00000141208 TRANSLATION nonsense_mediated_decay - - 3 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000048416 Mlf1 ENSMUST00000061322 ENSMUSP00000058596 TRANSLATION protein_coding - CCDS17395.1 1 282.0 0.0 2.8 8.0 246.6 0.0 -4,-5 0.912 6 8.958 MINOR ENSMUSG00000048416 Mlf1 ENSMUST00000077916 ENSMUSP00000077072 TRANSLATION protein_coding - CCDS17396.1 1 267.0 0.0 2.8 8.1 247.6 0.0 -4,-5 1.0 6 11.0 PRINCIPAL:1 ENSMUSG00000048416 Mlf1 ENSMUST00000142538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036834 Plch1 ENSMUST00000159374 - NO_TRANSLATION retained_intron ENSMUSG00000036834 Plch1 ENSMUST00000176861 ENSMUSP00000135562 TRANSLATION protein_coding start/stop - 3 269.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0014 2 -2.0 MINOR ENSMUSG00000036834 Plch1 ENSMUST00000159188 ENSMUSP00000124491 TRANSLATION protein_coding stop - 2 135.0 0.0 0.85 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000036834 Plch1 ENSMUST00000159982 - NO_TRANSLATION retained_intron ENSMUSG00000036834 Plch1 ENSMUST00000177143 ENSMUSP00000135424 TRANSLATION protein_coding - - 5 1673.0 14.0 9.72 0.0 465.1 0.0 -4,-7 0.2814 7 14.0 ALTERNATIVE:2 ENSMUSG00000036834 Plch1 ENSMUST00000084105 ENSMUSP00000081122 TRANSLATION protein_coding - CCDS38444.2 1 1682.0 14.0 9.72 0.0 465.1 0.0 -4,-5 0.4111 7 14.0 ALTERNATIVE:2 ENSMUSG00000036834 Plch1 ENSMUST00000175947 ENSMUSP00000135353 TRANSLATION protein_coding stop - 5 968.0 14.0 9.72 0.0 465.1 0.0 -4,-5 0.1335 2 -2.0 MINOR ENSMUSG00000036834 Plch1 ENSMUST00000161052 ENSMUSP00000125581 TRANSLATION protein_coding - - 1 34.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000036834 Plch1 ENSMUST00000162269 ENSMUSP00000124463 TRANSLATION protein_coding - CCDS57215.1 1 1003.0 14.0 9.72 2.0 465.1 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:2 ENSMUSG00000036834 Plch1 ENSMUST00000059973 ENSMUSP00000058524 TRANSLATION protein_coding - - 5 1681.0 14.0 9.72 0.0 465.1 0.0 -4,-5 0.2809 7 14.0 ALTERNATIVE:2 ENSMUSG00000036834 Plch1 ENSMUST00000048134 ENSMUSP00000047693 TRANSLATION protein_coding - - 1 1643.0 14.0 9.72 0.0 465.1 0.0 -4,-7 0.2814 7 14.0 ALTERNATIVE:2 ENSMUSG00000036834 Plch1 ENSMUST00000159676 ENSMUSP00000124632 TRANSLATION protein_coding - CCDS50918.1 1 1073.0 14.0 9.72 0.0 465.1 0.0 -4,-5 0.3315 3 14.0 ALTERNATIVE:2 ENSMUSG00000041084 Ostc ENSMUST00000197828 - NO_TRANSLATION retained_intron ENSMUSG00000041084 Ostc ENSMUST00000197152 - NO_TRANSLATION retained_intron ENSMUSG00000041084 Ostc ENSMUST00000043937 ENSMUSP00000046480 TRANSLATION protein_coding - CCDS38639.1 1 149.0 0.0 2.8 36.9 38.1 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000033400 Agl ENSMUST00000159995 ENSMUSP00000125246 TRANSLATION protein_coding start - 1 198.0 2.0 2.8 0.0 71.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000033400 Agl ENSMUST00000159670 ENSMUSP00000124840 TRANSLATION protein_coding stop - 5 116.0 0.0 2.15 0.0 78.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000033400 Agl ENSMUST00000040603 ENSMUSP00000044012 TRANSLATION protein_coding - CCDS38613.1 5 1532.0 5.0 23.81 35.1 1360.4 0.0 -4,-5 1.0 64 21.0 PRINCIPAL:1 ENSMUSG00000033400 Agl ENSMUST00000160484 ENSMUSP00000123985 TRANSLATION protein_coding start - 1 830.0 0.0 11.26 0.0 693.7 0.0 -4,-5 0.0285 37 -2.0 MINOR ENSMUSG00000033400 Agl ENSMUST00000162792 ENSMUSP00000124149 TRANSLATION protein_coding - CCDS38613.1 2 1532.0 5.0 23.81 35.1 1360.4 0.0 -4,-5 1.0 64 21.0 PRINCIPAL:1 ENSMUSG00000033400 Agl ENSMUST00000159742 ENSMUSP00000143582 TRANSLATION protein_coding - - 1 1279.0 5.0 19.07 0.0 1093.6 0.0 -4,-5 0.0691 55 5.0 MINOR ENSMUSG00000033400 Agl ENSMUST00000162040 - NO_TRANSLATION retained_intron ENSMUSG00000033400 Agl ENSMUST00000161336 ENSMUSP00000123877 TRANSLATION nonsense_mediated_decay - - 5 233.0 0.0 4.15 0.0 217.3 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000068547 Clca4a ENSMUST00000238960 ENSMUSP00000159165 TRANSLATION protein_coding - CCDS38661.1 - 925.0 6.0 6.4 0.0 530.5 2.0 3,-2 1.0 6 14.0 PRINCIPAL:2 ENSMUSG00000068547 Clca4a ENSMUST00000029923 ENSMUSP00000029923 TRANSLATION protein_coding - - 1 924.0 6.0 6.4 0.1 530.5 2.0 3,-2 0.6883 6 14.0 ALTERNATIVE:2 ENSMUSG00000095251 Tdpoz7 ENSMUST00000091692 ENSMUSP00000089284 TRANSLATION protein_coding - CCDS50981.1 - 340.0 0.0 0.64 0.0 98.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074457 S100a16 ENSMUST00000107335 ENSMUSP00000102958 TRANSLATION protein_coding - CCDS17536.1 5 124.0 5.0 2.75 0.0 41.3 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000074457 S100a16 ENSMUST00000098910 ENSMUSP00000096509 TRANSLATION protein_coding - CCDS17536.1 1 124.0 5.0 2.75 0.0 41.3 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000074457 S100a16 ENSMUST00000107333 ENSMUSP00000102956 TRANSLATION protein_coding - CCDS17536.1 3 124.0 5.0 2.75 0.0 41.3 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000074457 S100a16 ENSMUST00000127008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074457 S100a16 ENSMUST00000150833 ENSMUSP00000119168 TRANSLATION protein_coding stop - 3 72.0 3.0 1.75 0.0 41.3 0.0 -4,-5 0.0026 3 -2.0 MINOR ENSMUSG00000074457 S100a16 ENSMUST00000098911 ENSMUSP00000096510 TRANSLATION protein_coding - CCDS17536.1 1 124.0 5.0 2.75 0.0 41.3 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000074457 S100a16 ENSMUST00000107331 ENSMUSP00000102954 TRANSLATION protein_coding - CCDS17536.1 2 124.0 5.0 2.75 0.0 41.3 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000074457 S100a16 ENSMUST00000107334 ENSMUSP00000102957 TRANSLATION protein_coding - CCDS17536.1 3 124.0 5.0 2.75 0.0 41.3 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000057123 Gja5 ENSMUST00000072600 ENSMUSP00000088264 TRANSLATION protein_coding - CCDS17652.1 1 358.0 0.0 1.93 11.8 431.9 4.0 -3,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000057123 Gja5 ENSMUST00000199597 ENSMUSP00000143542 TRANSLATION protein_coding - - 1 368.0 0.0 1.6 0.0 420.3 4.0 -3,-7 0.0553 3 10.278 MINOR ENSMUSG00000057123 Gja5 ENSMUST00000132256 ENSMUSP00000123582 TRANSLATION protein_coding stop - 1 81.0 0.0 1.0 0.0 141.4 1.0 -3,-7 0.0 - -2.0 MINOR ENSMUSG00000032657 Entrep3 ENSMUST00000140473 ENSMUSP00000116419 TRANSLATION protein_coding stop - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032657 Entrep3 ENSMUST00000119707 ENSMUSP00000113579 TRANSLATION protein_coding - - 5 591.0 0.0 0.0 1.0 55.2 7.0 -4,-1 0.0207 - 2.388 MINOR ENSMUSG00000032657 Entrep3 ENSMUST00000126115 - NO_TRANSLATION retained_intron ENSMUSG00000032657 Entrep3 ENSMUST00000117278 ENSMUSP00000113706 TRANSLATION protein_coding - - 5 650.0 0.0 0.0 1.8 80.5 8.0 -4,-1 0.1062 1 4.167 MINOR ENSMUSG00000032657 Entrep3 ENSMUST00000127982 ENSMUSP00000114855 TRANSLATION nonsense_mediated_decay - - 1 140.0 0.0 0.0 0.0 32.9 3.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000032657 Entrep3 ENSMUST00000125501 - NO_TRANSLATION retained_intron ENSMUSG00000032657 Entrep3 ENSMUST00000147696 ENSMUSP00000117185 TRANSLATION nonsense_mediated_decay - - 1 391.0 0.0 0.0 0.0 115.4 9.0 -4,-1 0.0609 1 -2.0 MINOR ENSMUSG00000032657 Entrep3 ENSMUST00000136209 - NO_TRANSLATION retained_intron ENSMUSG00000032657 Entrep3 ENSMUST00000155033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032657 Entrep3 ENSMUST00000041913 ENSMUSP00000039261 TRANSLATION protein_coding - CCDS17492.1 1 669.0 0.0 0.0 10.2 115.4 9.0 -4,-1 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000027744 Stoml3 ENSMUST00000124702 - NO_TRANSLATION retained_intron ENSMUSG00000027744 Stoml3 ENSMUST00000029307 ENSMUSP00000029307 TRANSLATION protein_coding - CCDS17347.1 1 287.0 0.0 5.5 0.3 104.8 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000033721 Vav3 ENSMUST00000126179 - NO_TRANSLATION retained_intron ENSMUSG00000033721 Vav3 ENSMUST00000137871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033721 Vav3 ENSMUST00000148866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033721 Vav3 ENSMUST00000046864 ENSMUSP00000036270 TRANSLATION protein_coding - CCDS17773.1 1 847.0 8.0 19.2 22.3 445.4 0.0 -4,-6 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000033721 Vav3 ENSMUST00000106576 ENSMUSP00000102186 TRANSLATION protein_coding - CCDS59650.1 1 287.0 0.0 5.85 1.0 156.0 0.0 -4,-6 0.0163 9 0.0 MINOR ENSMUSG00000033721 Vav3 ENSMUST00000128033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027896 Slc16a4 ENSMUST00000029502 ENSMUSP00000029502 TRANSLATION protein_coding - CCDS17736.1 1 500.0 0.0 3.15 0.1 88.3 12.0 -4,-6 1.0 2 6.0 PRINCIPAL:2 ENSMUSG00000027896 Slc16a4 ENSMUST00000153322 - NO_TRANSLATION retained_intron ENSMUSG00000027896 Slc16a4 ENSMUST00000106723 ENSMUSP00000102334 TRANSLATION protein_coding - CCDS79997.1 1 468.0 0.0 2.75 0.0 87.5 10.0 -4,-6 0.1183 2 5.202 ALTERNATIVE:2 ENSMUSG00000090919 Pabpc4l ENSMUST00000195537 ENSMUSP00000141854 TRANSLATION protein_coding stop - 3 50.0 0.0 1.0 0.0 35.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090919 Pabpc4l ENSMUST00000195436 ENSMUSP00000141684 TRANSLATION protein_coding stop - 2 172.0 0.0 2.0 0.0 136.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090919 Pabpc4l ENSMUST00000192793 ENSMUSP00000141300 TRANSLATION protein_coding - CCDS50904.1 3 370.0 0.0 3.0 6.3 279.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000090919 Pabpc4l ENSMUST00000166505 ENSMUSP00000126224 TRANSLATION protein_coding - CCDS50904.1 2 370.0 0.0 3.0 6.3 279.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038612 Mcl1 ENSMUST00000178686 ENSMUSP00000135915 TRANSLATION protein_coding - - 1 285.0 0.0 2.6 0.0 91.9 1.0 -4,-5 0.7464 2 8.0 PRINCIPAL:2 ENSMUSG00000038612 Mcl1 ENSMUST00000037947 ENSMUSP00000044048 TRANSLATION protein_coding - CCDS57236.1 1 331.0 0.0 2.6 0.4 91.9 1.0 -4,-1 0.4038 4 8.0 ALTERNATIVE:2 ENSMUSG00000074424 Spopfm2 ENSMUST00000161475 ENSMUSP00000124942 TRANSLATION protein_coding - CCDS50982.1 1 357.0 0.0 0.64 0.0 112.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074424 Spopfm2 ENSMUST00000167916 ENSMUSP00000132199 TRANSLATION protein_coding - CCDS50982.1 - 357.0 0.0 0.64 0.0 112.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095388 Hsd3b8 ENSMUST00000058728 ENSMUSP00000055886 TRANSLATION protein_coding - CCDS57247.1 1 373.0 27.0 3.0 4.5 351.7 1.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000095388 Hsd3b8 ENSMUST00000186215 ENSMUSP00000140584 TRANSLATION protein_coding - CCDS57247.1 2 373.0 27.0 3.0 4.5 351.7 1.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000027500 Stmn2 ENSMUST00000194905 - NO_TRANSLATION retained_intron ENSMUSG00000027500 Stmn2 ENSMUST00000191847 - NO_TRANSLATION retained_intron ENSMUSG00000027500 Stmn2 ENSMUST00000194307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027500 Stmn2 ENSMUST00000029002 ENSMUSP00000029002 TRANSLATION protein_coding - CCDS17231.1 1 179.0 0.0 2.0 36.9 191.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000037325 Bbs7 ENSMUST00000142333 ENSMUSP00000118961 TRANSLATION protein_coding stop - 2 91.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000037325 Bbs7 ENSMUST00000108155 ENSMUSP00000103790 TRANSLATION protein_coding - - 5 673.0 3.0 14.9975 1.0 0.0 0.0 -4,-6 0.0907 12 7.002 MINOR ENSMUSG00000037325 Bbs7 ENSMUST00000040148 ENSMUSP00000047273 TRANSLATION protein_coding - - 1 715.0 3.0 15.9975 33.1 0.0 0.0 -4,-6 0.8649 12 13.0 ALTERNATIVE:1 ENSMUSG00000037325 Bbs7 ENSMUST00000129671 - NO_TRANSLATION retained_intron ENSMUSG00000037325 Bbs7 ENSMUST00000199136 - NO_TRANSLATION retained_intron ENSMUSG00000037325 Bbs7 ENSMUST00000108156 ENSMUSP00000103791 TRANSLATION protein_coding - CCDS17314.2 1 715.0 3.0 15.9975 33.1 0.0 0.0 -4,-6 1.0 12 13.0 PRINCIPAL:4 ENSMUSG00000043441 Gpr149 ENSMUST00000058535 ENSMUSP00000060893 TRANSLATION protein_coding - CCDS17380.1 1 732.0 0.0 0.0 3.3 24.3 0.0 -4,-7 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000043441 Gpr149 ENSMUST00000149007 - NO_TRANSLATION retained_intron ENSMUSG00000027944 Hax1 ENSMUST00000198782 ENSMUSP00000143155 TRANSLATION protein_coding - CCDS79956.1 5 254.0 0.0 1.6 0.0 0.0 0.0 -4,-5 0.1711 6 6.0 MINOR ENSMUSG00000027944 Hax1 ENSMUST00000199469 - NO_TRANSLATION retained_intron ENSMUSG00000027944 Hax1 ENSMUST00000198889 - NO_TRANSLATION retained_intron ENSMUSG00000027944 Hax1 ENSMUST00000199163 ENSMUSP00000143663 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.015 1 -2.0 MINOR ENSMUSG00000027944 Hax1 ENSMUST00000197786 ENSMUSP00000142627 TRANSLATION protein_coding - CCDS79957.1 1 196.0 0.0 1.6 0.0 0.0 0.0 -4,-2 0.1926 7 6.0 MINOR ENSMUSG00000027944 Hax1 ENSMUST00000079724 ENSMUSP00000078661 TRANSLATION protein_coding - CCDS17519.1 1 280.0 0.0 1.6 8.9 0.0 0.0 -4,-2 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000027944 Hax1 ENSMUST00000197432 ENSMUSP00000143136 TRANSLATION protein_coding start - 2 66.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0032 - -2.0 MINOR ENSMUSG00000027944 Hax1 ENSMUST00000197767 ENSMUSP00000142445 TRANSLATION protein_coding - - 5 277.0 0.0 1.6 5.2 0.0 0.0 -4,-2 0.6812 8 7.596 MINOR ENSMUSG00000027944 Hax1 ENSMUST00000197725 ENSMUSP00000142741 TRANSLATION protein_coding - - 5 151.0 0.0 1.6 0.0 0.0 0.0 -4,-5 0.0357 3 6.0 MINOR ENSMUSG00000027944 Hax1 ENSMUST00000199014 - NO_TRANSLATION retained_intron ENSMUSG00000027944 Hax1 ENSMUST00000197481 - NO_TRANSLATION retained_intron ENSMUSG00000027944 Hax1 ENSMUST00000199740 ENSMUSP00000143557 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0082 3 -2.0 MINOR ENSMUSG00000046999 1110032F04Rik ENSMUST00000054551 ENSMUSP00000056782 TRANSLATION protein_coding - CCDS50931.1 - 247.0 0.0 0.0 5.3 382.5 0.0 1,-3 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000028152 Tspan5 ENSMUST00000121826 ENSMUSP00000113359 TRANSLATION protein_coding - - 1 197.0 0.0 3.194 1.0 170.3 4.0 2,-2 0.024 2 7.464 MINOR ENSMUSG00000028152 Tspan5 ENSMUST00000119993 ENSMUSP00000113230 TRANSLATION protein_coding - - 1 197.0 0.0 3.194 1.0 170.3 4.0 2,-2 0.024 2 7.464 MINOR ENSMUSG00000028152 Tspan5 ENSMUST00000142001 ENSMUSP00000117857 TRANSLATION nonsense_mediated_decay - - 3 122.0 0.0 1.765 0.0 79.8 3.0 2,-3 0.0012 - -2.0 MINOR ENSMUSG00000028152 Tspan5 ENSMUST00000029800 ENSMUSP00000029800 TRANSLATION protein_coding - CCDS17870.1 1 268.0 0.0 4.244 36.2 210.9 8.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000028152 Tspan5 ENSMUST00000146356 ENSMUSP00000114663 TRANSLATION protein_coding stop - 3 106.0 0.0 1.995 0.0 103.9 3.0 2,-2 0.0019 - -2.0 MINOR ENSMUSG00000028152 Tspan5 ENSMUST00000127772 ENSMUSP00000122500 TRANSLATION nonsense_mediated_decay - - 3 49.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028152 Tspan5 ENSMUST00000135629 ENSMUSP00000120961 TRANSLATION protein_coding stop - 3 79.0 0.0 1.515 0.0 79.8 3.0 2,-2 0.0012 - -2.0 MINOR ENSMUSG00000028152 Tspan5 ENSMUST00000142890 ENSMUSP00000120969 TRANSLATION nonsense_mediated_decay - - 1 193.0 0.0 2.815 1.0 115.5 7.0 -4,-5 0.0028 - -2.0 MINOR ENSMUSG00000028152 Tspan5 ENSMUST00000153336 ENSMUSP00000122120 TRANSLATION protein_coding stop - 3 67.0 0.0 0.75 0.0 66.8 3.0 2,-3 0.0028 - -2.0 MINOR ENSMUSG00000028078 Dclk2 ENSMUST00000029719 ENSMUSP00000029719 TRANSLATION protein_coding - CCDS17448.1 1 756.0 18.0 10.5 2.6 388.1 0.0 -4,-5 1.0 22 15.0 PRINCIPAL:4 ENSMUSG00000028078 Dclk2 ENSMUST00000192260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028078 Dclk2 ENSMUST00000194452 ENSMUSP00000141816 TRANSLATION protein_coding - CCDS79935.1 1 591.0 18.0 7.65 1.3 348.2 0.0 -4,-5 0.084 19 7.916 MINOR ENSMUSG00000028078 Dclk2 ENSMUST00000192773 ENSMUSP00000141567 TRANSLATION nonsense_mediated_decay - - 2 641.0 18.0 8.85 0.0 357.7 0.0 -4,-5 0.0035 19 -2.0 MINOR ENSMUSG00000028078 Dclk2 ENSMUST00000193769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028078 Dclk2 ENSMUST00000191752 ENSMUSP00000141707 TRANSLATION protein_coding - - 1 708.0 18.0 9.65 0.0 355.7 0.0 -4,-5 0.0044 19 11.73 MINOR ENSMUSG00000028078 Dclk2 ENSMUST00000193632 ENSMUSP00000141866 TRANSLATION protein_coding - - 5 711.0 18.0 10.4 0.0 388.1 0.0 -4,-5 0.0504 21 13.802 MINOR ENSMUSG00000028078 Dclk2 ENSMUST00000195561 ENSMUSP00000142267 TRANSLATION protein_coding - CCDS79936.1 1 755.0 18.0 10.5 2.6 388.1 0.0 -4,-5 0.9962 22 15.0 ALTERNATIVE:2 ENSMUSG00000028078 Dclk2 ENSMUST00000193400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027559 Car3 ENSMUST00000195834 - NO_TRANSLATION retained_intron ENSMUSG00000027559 Car3 ENSMUST00000029076 ENSMUSP00000029076 TRANSLATION protein_coding - CCDS17250.1 1 260.0 3.0 6.25 31.8 304.8 0.0 -4,-5 1.0 23 19.0 PRINCIPAL:1 ENSMUSG00000027559 Car3 ENSMUST00000195575 - NO_TRANSLATION retained_intron ENSMUSG00000027552 E2f5 ENSMUST00000029069 ENSMUSP00000029069 TRANSLATION protein_coding - CCDS38391.1 1 335.0 0.0 4.45 0.1 193.6 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000038543 BC028528 ENSMUST00000036360 ENSMUSP00000046810 TRANSLATION protein_coding - CCDS84656.1 1 147.0 0.0 0.0 0.9 203.1 0.0 2,-1 0.5144 - 0.0 ALTERNATIVE:2 ENSMUSG00000038543 BC028528 ENSMUST00000145949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038543 BC028528 ENSMUST00000133611 - NO_TRANSLATION retained_intron ENSMUSG00000038543 BC028528 ENSMUST00000171519 ENSMUSP00000127666 TRANSLATION protein_coding - CCDS50998.1 1 148.0 0.0 0.0 0.9 207.6 0.0 2,-1 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000038543 BC028528 ENSMUST00000090476 ENSMUSP00000102749 TRANSLATION protein_coding - CCDS50998.1 2 148.0 0.0 0.0 0.9 207.6 0.0 2,-1 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000027748 Trpc4 ENSMUST00000029311 ENSMUSP00000029311 TRANSLATION protein_coding - CCDS17350.1 1 974.0 0.0 9.73 11.0 211.9 9.0 -4,-1 1.0 4 11.0 PRINCIPAL:3 ENSMUSG00000027748 Trpc4 ENSMUST00000198444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027748 Trpc4 ENSMUST00000199359 - NO_TRANSLATION retained_intron ENSMUSG00000027748 Trpc4 ENSMUST00000200341 ENSMUSP00000142921 TRANSLATION nonsense_mediated_decay - - 1 400.0 0.0 2.6 0.0 98.2 3.0 -4,-1 0.002 2 -2.0 MINOR ENSMUSG00000027748 Trpc4 ENSMUST00000199399 - NO_TRANSLATION retained_intron ENSMUSG00000027748 Trpc4 ENSMUST00000200048 ENSMUSP00000143593 TRANSLATION protein_coding - CCDS79904.1 1 890.0 0.0 9.73 7.7 211.9 9.0 -4,-1 0.7916 3 10.01 ALTERNATIVE:1 ENSMUSG00000052539 Magi3 ENSMUST00000064371 ENSMUSP00000067932 TRANSLATION protein_coding - CCDS17699.1 1 1126.0 0.0 12.682 0.0 293.8 0.0 -4,-6 1.0 31 8.0 PRINCIPAL:2 ENSMUSG00000052539 Magi3 ENSMUST00000122303 ENSMUSP00000113713 TRANSLATION protein_coding - CCDS17699.1 1 1126.0 0.0 12.682 0.0 293.8 0.0 -4,-6 1.0 31 8.0 PRINCIPAL:2 ENSMUSG00000052539 Magi3 ENSMUST00000121198 ENSMUSP00000112934 TRANSLATION protein_coding - CCDS51031.1 5 1476.0 0.0 12.682 0.4 293.8 0.0 -4,-6 0.5455 36 8.0 ALTERNATIVE:2 ENSMUSG00000052539 Magi3 ENSMUST00000199201 - NO_TRANSLATION retained_intron ENSMUSG00000027722 Afg2a ENSMUST00000108112 ENSMUSP00000103747 TRANSLATION protein_coding - CCDS50895.1 1 893.0 26.0 8.55 7.3 301.8 0.0 -4,-2 0.9995 14 16.0 ALTERNATIVE:1 ENSMUSG00000027722 Afg2a ENSMUST00000198968 ENSMUSP00000143349 TRANSLATION protein_coding - CCDS79900.1 1 842.0 26.0 8.314 0.1 301.8 0.0 -4,-2 0.2325 14 13.526 MINOR ENSMUSG00000027722 Afg2a ENSMUST00000132958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027722 Afg2a ENSMUST00000124347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027722 Afg2a ENSMUST00000142199 - NO_TRANSLATION retained_intron ENSMUSG00000027722 Afg2a ENSMUST00000138225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027722 Afg2a ENSMUST00000130674 - NO_TRANSLATION retained_intron ENSMUSG00000027722 Afg2a ENSMUST00000147687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027722 Afg2a ENSMUST00000029277 ENSMUSP00000029277 TRANSLATION protein_coding - CCDS17321.1 1 892.0 26.0 8.55 7.3 301.8 0.0 -4,-2 1.0 14 16.0 PRINCIPAL:4 ENSMUSG00000027722 Afg2a ENSMUST00000200093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040747 Cd53 ENSMUST00000038845 ENSMUSP00000035781 TRANSLATION protein_coding - CCDS17728.1 1 219.0 0.0 5.75 14.7 175.9 0.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027927 Lelp1 ENSMUST00000029535 ENSMUSP00000029535 TRANSLATION protein_coding - CCDS50974.1 1 120.0 0.0 0.0 0.0 104.2 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000059994 Fcrl1 ENSMUST00000191666 ENSMUSP00000141916 TRANSLATION protein_coding - - 1 208.0 0.0 2.33 0.0 37.9 0.0 3,-2 0.062 - 6.374 MINOR ENSMUSG00000059994 Fcrl1 ENSMUST00000194786 ENSMUSP00000142286 TRANSLATION protein_coding - CCDS79937.1 1 324.0 0.0 3.14284 0.0 37.9 2.0 3,-2 0.4341 - 8.0 ALTERNATIVE:2 ENSMUSG00000059994 Fcrl1 ENSMUST00000167200 ENSMUSP00000128235 TRANSLATION protein_coding - CCDS50942.1 1 300.0 0.0 2.94284 0.0 37.9 0.0 3,-2 0.2233 - 7.598 ALTERNATIVE:2 ENSMUSG00000059994 Fcrl1 ENSMUST00000072480 ENSMUSP00000072300 TRANSLATION protein_coding - CCDS17452.1 1 343.0 0.0 3.14284 0.1 37.9 2.0 3,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000059994 Fcrl1 ENSMUST00000163661 ENSMUSP00000130936 TRANSLATION protein_coding - CCDS50941.1 1 363.0 0.0 3.14284 0.0 37.9 2.0 -2,-3 0.345 - 8.0 ALTERNATIVE:2 ENSMUSG00000059994 Fcrl1 ENSMUST00000193854 - NO_TRANSLATION retained_intron ENSMUSG00000028018 Gstcd ENSMUST00000161577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028018 Gstcd ENSMUST00000197381 - NO_TRANSLATION retained_intron ENSMUSG00000028018 Gstcd ENSMUST00000080583 ENSMUSP00000079421 TRANSLATION protein_coding - CCDS17847.1 1 634.0 0.0 0.0 8.5 56.6 0.0 -4,-5 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000028018 Gstcd ENSMUST00000160402 - NO_TRANSLATION retained_intron ENSMUSG00000028018 Gstcd ENSMUST00000162926 - NO_TRANSLATION retained_intron ENSMUSG00000028018 Gstcd ENSMUST00000029651 ENSMUSP00000029651 TRANSLATION protein_coding - CCDS17847.1 1 634.0 0.0 0.0 8.5 56.6 0.0 -4,-5 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000028114 Mettl14 ENSMUST00000090371 ENSMUSP00000087848 TRANSLATION protein_coding - - 1 217.0 0.0 3.25 0.0 0.0 0.0 -4,-7 0.0 3 0.0 MINOR ENSMUSG00000028114 Mettl14 ENSMUST00000197628 - NO_TRANSLATION retained_intron ENSMUSG00000028114 Mettl14 ENSMUST00000029759 ENSMUSP00000029759 TRANSLATION protein_coding - CCDS38622.1 1 456.0 0.0 7.25 9.2 213.3 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000028114 Mettl14 ENSMUST00000174323 ENSMUSP00000134198 TRANSLATION protein_coding - - 1 377.0 0.0 6.2995 0.0 202.8 0.0 -4,-7 0.0043 3 9.468 MINOR ENSMUSG00000028114 Mettl14 ENSMUST00000174006 ENSMUSP00000133741 TRANSLATION protein_coding start/stop - 3 211.0 0.0 3.75 0.0 144.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027762 Sucnr1 ENSMUST00000029326 ENSMUSP00000029326 TRANSLATION protein_coding - CCDS38442.1 1 317.0 0.0 0.8 6.0 123.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000027762 Sucnr1 ENSMUST00000195544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000103362 Tdpoz2 ENSMUST00000191960 ENSMUSP00000141299 TRANSLATION protein_coding - CCDS57230.1 - 360.0 0.0 0.64 0.0 127.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000027531 Impa1 ENSMUST00000118410 ENSMUSP00000113860 TRANSLATION protein_coding - - 1 276.0 10.0 6.33 0.0 262.2 0.0 -4,-5 0.0444 11 14.832 MINOR ENSMUSG00000027531 Impa1 ENSMUST00000195155 - NO_TRANSLATION retained_intron ENSMUSG00000027531 Impa1 ENSMUST00000191670 ENSMUSP00000141345 TRANSLATION protein_coding - CCDS79884.1 2 208.0 7.0 4.49 0.0 170.6 0.0 -4,-5 0.0028 7 4.32 MINOR ENSMUSG00000027531 Impa1 ENSMUST00000065938 ENSMUSP00000068174 TRANSLATION protein_coding - CCDS17240.1 1 277.0 10.0 7.33 34.7 281.7 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000027531 Impa1 ENSMUST00000128912 ENSMUSP00000116088 TRANSLATION protein_coding stop - 5 89.0 2.0 2.08 0.0 50.3 0.0 -4,-5 0.0003 3 -2.0 MINOR ENSMUSG00000027834 Serpini1 ENSMUST00000161776 ENSMUSP00000123845 TRANSLATION protein_coding stop - 3 207.0 0.0 3.0 0.0 170.1 0.0 3,-2 0.0004 2 -2.0 MINOR ENSMUSG00000027834 Serpini1 ENSMUST00000161695 - NO_TRANSLATION retained_intron ENSMUSG00000027834 Serpini1 ENSMUST00000029423 ENSMUSP00000029423 TRANSLATION protein_coding - CCDS17415.1 1 410.0 0.0 8.0 9.8 373.7 0.0 3,-2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000027834 Serpini1 ENSMUST00000195285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118504 Gm53012 ENSMUST00000239082 ENSMUSP00000159175 TRANSLATION nonsense_mediated_decay,RT start - - 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000118504 Gm53012 ENSMUST00000239076 ENSMUSP00000159150 TRANSLATION nonsense_mediated_decay,RT - CCDS17520.1 - 253.0 0.0 0.0 13.7 256.9 0.0 -3,-5 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000044080 S100a1 ENSMUST00000107340 ENSMUSP00000102963 TRANSLATION protein_coding - - 2 63.0 9.0 1.462 0.0 74.7 0.0 -4,-5 0.0 - 10.872 MINOR ENSMUSG00000044080 S100a1 ENSMUST00000060738 ENSMUSP00000058237 TRANSLATION protein_coding - CCDS38503.1 1 94.0 14.0 2.33 26.7 100.6 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000038495 Otud7b ENSMUST00000090785 ENSMUSP00000088291 TRANSLATION protein_coding - CCDS17629.1 1 840.0 0.0 7.28 9.1 137.7 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000038495 Otud7b ENSMUST00000098849 ENSMUSP00000096449 TRANSLATION protein_coding - CCDS17629.1 5 840.0 0.0 7.28 9.1 137.7 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000038495 Otud7b ENSMUST00000138206 ENSMUSP00000121847 TRANSLATION protein_coding stop - 3 195.0 0.0 3.1 0.0 23.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038495 Otud7b ENSMUST00000135263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038495 Otud7b ENSMUST00000035519 ENSMUSP00000046413 TRANSLATION protein_coding - CCDS17629.1 1 840.0 0.0 7.28 9.1 137.7 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000038495 Otud7b ENSMUST00000132980 ENSMUSP00000115699 TRANSLATION protein_coding stop - 5 101.0 0.0 1.35 0.0 23.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038495 Otud7b ENSMUST00000196172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038495 Otud7b ENSMUST00000146660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042997 Nhlrc3 ENSMUST00000129497 - NO_TRANSLATION retained_intron ENSMUSG00000042997 Nhlrc3 ENSMUST00000198983 - NO_TRANSLATION retained_intron ENSMUSG00000042997 Nhlrc3 ENSMUST00000056749 ENSMUSP00000055295 TRANSLATION protein_coding - CCDS17345.1 1 347.0 3.0 6.75 4.9 28.3 0.0 2,-3 1.0 8 17.0 PRINCIPAL:1 ENSMUSG00000042997 Nhlrc3 ENSMUST00000153342 - NO_TRANSLATION retained_intron ENSMUSG00000042997 Nhlrc3 ENSMUST00000130348 ENSMUSP00000114215 TRANSLATION nonsense_mediated_decay - - 1 108.0 0.0 1.0 0.0 0.0 0.0 2,-4 0.0016 - -2.0 MINOR ENSMUSG00000057609 Lce1a1 ENSMUST00000074142 ENSMUSP00000073776 TRANSLATION protein_coding - CCDS17562.1 1 143.0 0.0 0.0 0.0 32.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000102439 Flg ENSMUST00000180293 ENSMUSP00000141844 TRANSLATION protein_coding start/stop - - 256.0 0.0 0.0 0.0 31.4 0.0 -4,-5 0.0005 9 -2.0 ALTERNATIVE:2 ENSMUSG00000102439 Flg ENSMUST00000178008 ENSMUSP00000141981 TRANSLATION protein_coding start/stop - - 256.0 0.0 0.0 0.0 31.9 0.0 -4,-5 0.0005 8 -2.0 ALTERNATIVE:2 ENSMUSG00000102439 Flg ENSMUST00000180308 ENSMUSP00000142003 TRANSLATION protein_coding stop - 1 357.0 5.0 1.0 0.0 47.8 0.0 -4,-5 0.7701 4 -2.0 ALTERNATIVE:2 ENSMUSG00000102439 Flg ENSMUST00000216295 - NO_TRANSLATION TEC ENSMUSG00000102439 Flg ENSMUST00000179250 ENSMUSP00000141513 TRANSLATION protein_coding start/stop - - 255.0 0.0 0.0 0.0 32.7 0.0 -4,-5 0.0012 8 -2.0 ALTERNATIVE:2 ENSMUSG00000102439 Flg ENSMUST00000178695 ENSMUSP00000141392 TRANSLATION protein_coding start/stop - - 259.0 0.0 0.0 0.0 32.1 0.0 -4,-5 0.0005 11 -2.0 ALTERNATIVE:2 ENSMUSG00000102439 Flg ENSMUST00000179477 ENSMUSP00000141987 TRANSLATION protein_coding start/stop - - 256.0 0.0 0.0 0.0 32.7 0.0 -4,-5 0.0012 9 -2.0 ALTERNATIVE:2 ENSMUSG00000102439 Flg ENSMUST00000214837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102439 Flg ENSMUST00000178752 ENSMUSP00000141273 TRANSLATION protein_coding start/stop - - 252.0 0.0 0.0 0.0 33.6 0.0 -4,-5 0.0011 9 -2.0 ALTERNATIVE:2 ENSMUSG00000102439 Flg ENSMUST00000050758 ENSMUSP00000142294 TRANSLATION protein_coding start - - 336.0 0.0 0.0 0.0 32.7 0.0 -4,-7 0.01 11 -2.0 PRINCIPAL:5 ENSMUSG00000028082 Sh3d19 ENSMUST00000238443 ENSMUSP00000158699 TRANSLATION protein_coding - - - 1065.0 0.0 5.595 0.0 213.4 0.0 -4,-5 0.1905 15 12.0 MINOR ENSMUSG00000028082 Sh3d19 ENSMUST00000238222 ENSMUSP00000158775 TRANSLATION protein_coding - CCDS38469.2 - 789.0 0.0 5.595 5.8 213.4 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000028082 Sh3d19 ENSMUST00000107664 ENSMUSP00000103291 TRANSLATION protein_coding - CCDS38469.2 1 789.0 0.0 5.595 5.8 213.4 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000028082 Sh3d19 ENSMUST00000238545 ENSMUSP00000158832 TRANSLATION protein_coding - - - 1006.0 0.0 5.595 3.0 213.4 0.0 -4,-1 0.5327 14 12.834 MINOR ENSMUSG00000028082 Sh3d19 ENSMUST00000238606 ENSMUSP00000158808 TRANSLATION protein_coding - - - 730.0 0.0 5.445 1.0 186.7 0.0 -4,-5 0.0851 12 10.098 MINOR ENSMUSG00000028082 Sh3d19 ENSMUST00000183202 - NO_TRANSLATION retained_intron ENSMUSG00000028082 Sh3d19 ENSMUST00000238331 ENSMUSP00000158600 TRANSLATION protein_coding - CCDS38469.2 - 789.0 0.0 5.595 5.8 213.4 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000028082 Sh3d19 ENSMUST00000182666 ENSMUSP00000138320 TRANSLATION protein_coding - CCDS38469.2 5 789.0 0.0 5.595 5.8 213.4 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000046519 Golph3l ENSMUST00000177390 ENSMUSP00000134799 TRANSLATION protein_coding - - 1 285.0 0.0 6.0 25.4 196.0 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000046519 Golph3l ENSMUST00000177389 ENSMUSP00000135406 TRANSLATION protein_coding - - 1 201.0 0.0 4.75 0.0 129.4 0.0 -4,-6 0.0 3 5.502 MINOR ENSMUSG00000046519 Golph3l ENSMUST00000176674 ENSMUSP00000134885 TRANSLATION protein_coding - - 5 241.0 0.0 4.5 3.1 126.6 0.0 -4,-7 0.0339 3 5.18 MINOR ENSMUSG00000046519 Golph3l ENSMUST00000176541 ENSMUSP00000135056 TRANSLATION nonsense_mediated_decay - - 1 117.0 0.0 2.0 0.0 62.8 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000046519 Golph3l ENSMUST00000177399 ENSMUSP00000134998 TRANSLATION protein_coding - - 3 101.0 0.0 1.75 0.0 41.7 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000046519 Golph3l ENSMUST00000176755 ENSMUSP00000134804 TRANSLATION protein_coding - - 1 222.0 0.0 5.0 0.0 163.9 0.0 -4,-7 0.0 2 8.076 MINOR ENSMUSG00000068523 Gng5 ENSMUST00000119130 ENSMUSP00000113018 TRANSLATION protein_coding - - 2 67.0 0.0 1.12 0.0 35.2 0.0 -4,-6 0.0142 2 7.554 MINOR ENSMUSG00000068523 Gng5 ENSMUST00000090031 ENSMUSP00000087485 TRANSLATION protein_coding - CCDS17903.1 1 68.0 0.0 1.75 34.2 56.9 0.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000068523 Gng5 ENSMUST00000118280 ENSMUSP00000114014 TRANSLATION protein_coding - CCDS17903.1 1 68.0 0.0 1.75 34.2 56.9 0.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000040374 Pex2 ENSMUST00000195855 ENSMUSP00000141927 TRANSLATION protein_coding - CCDS17228.1 1 305.0 8.0 0.0 22.2 156.6 1.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000040374 Pex2 ENSMUST00000191916 ENSMUSP00000141945 TRANSLATION protein_coding - CCDS17228.1 5 305.0 8.0 0.0 22.2 156.6 1.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000040374 Pex2 ENSMUST00000165309 ENSMUSP00000126445 TRANSLATION protein_coding - CCDS17228.1 5 305.0 8.0 0.0 22.2 156.6 1.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000040374 Pex2 ENSMUST00000059021 ENSMUSP00000059415 TRANSLATION protein_coding - CCDS17228.1 1 305.0 8.0 0.0 22.2 156.6 1.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000040374 Pex2 ENSMUST00000071280 ENSMUSP00000071255 TRANSLATION protein_coding - CCDS17228.1 1 305.0 8.0 0.0 22.2 156.6 1.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000040374 Pex2 ENSMUST00000164828 ENSMUSP00000129311 TRANSLATION protein_coding - CCDS17228.1 2 305.0 8.0 0.0 22.2 156.6 1.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000048652 Samd13 ENSMUST00000147113 ENSMUSP00000118934 TRANSLATION protein_coding - - 5 102.0 0.0 2.0 17.6 35.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048652 Samd13 ENSMUST00000124931 ENSMUSP00000118464 TRANSLATION protein_coding - - 5 102.0 0.0 2.0 17.6 35.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048652 Samd13 ENSMUST00000125965 ENSMUSP00000119608 TRANSLATION protein_coding - - 5 102.0 0.0 2.0 17.6 35.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048652 Samd13 ENSMUST00000144837 - NO_TRANSLATION retained_intron ENSMUSG00000048652 Samd13 ENSMUST00000197989 ENSMUSP00000143496 TRANSLATION protein_coding - - 5 83.0 0.0 2.0 1.7 35.2 0.0 -4,-5 0.2012 - 12.168 MINOR ENSMUSG00000094018 S100a2 ENSMUST00000238373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094018 S100a2 ENSMUST00000199225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094018 S100a2 ENSMUST00000238700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094018 S100a2 ENSMUST00000179550 ENSMUSP00000136224 TRANSLATION protein_coding - CCDS57224.1 5 104.0 4.0 1.6 0.0 25.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000094018 S100a2 ENSMUST00000238223 - NO_TRANSLATION transcribed_unitary_pseudogene ENSMUSG00000028189 Ctbs ENSMUST00000061937 ENSMUSP00000059167 TRANSLATION protein_coding - CCDS80048.1 1 366.0 2.0 6.8 0.7 122.7 0.0 3,-2 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000028189 Ctbs ENSMUST00000029840 ENSMUSP00000029840 TRANSLATION protein_coding - CCDS17902.1 1 312.0 2.0 5.8 0.0 103.5 0.0 3,-2 0.045 5 10.85 MINOR ENSMUSG00000028189 Ctbs ENSMUST00000196609 ENSMUSP00000142380 TRANSLATION nonsense_mediated_decay - - 5 59.0 0.0 0.8 0.0 0.0 0.0 3,-2 0.0012 - -2.0 MINOR ENSMUSG00000028189 Ctbs ENSMUST00000197166 - NO_TRANSLATION retained_intron ENSMUSG00000028048 Gba ENSMUST00000077367 ENSMUSP00000076589 TRANSLATION protein_coding - CCDS17493.1 1 515.0 10.0 9.0 5.3 676.5 0.0 3,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000028048 Gba ENSMUST00000200124 - NO_TRANSLATION retained_intron ENSMUSG00000028048 Gba ENSMUST00000196887 - NO_TRANSLATION retained_intron ENSMUSG00000028048 Gba ENSMUST00000197738 ENSMUSP00000142401 TRANSLATION nonsense_mediated_decay - - 1 388.0 8.0 6.0 0.0 496.9 0.0 3,-2 0.0052 7 -2.0 MINOR ENSMUSG00000028048 Gba ENSMUST00000167998 ENSMUSP00000130660 TRANSLATION protein_coding - CCDS17493.1 1 515.0 10.0 9.0 5.3 676.5 0.0 3,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000036873 2410004B18Rik ENSMUST00000039571 ENSMUSP00000045376 TRANSLATION protein_coding - CCDS17898.1 1 180.0 0.0 0.0 13.8 132.6 0.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000036873 2410004B18Rik ENSMUST00000190472 ENSMUSP00000140015 TRANSLATION protein_coding start - 3 83.0 0.0 0.0 0.0 70.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000036873 2410004B18Rik ENSMUST00000188034 ENSMUSP00000140075 TRANSLATION protein_coding start - 5 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036873 2410004B18Rik ENSMUST00000134575 ENSMUSP00000119149 TRANSLATION nonsense_mediated_decay - - 1 98.0 0.0 0.0 0.0 80.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036873 2410004B18Rik ENSMUST00000138876 - NO_TRANSLATION retained_intron ENSMUSG00000036873 2410004B18Rik ENSMUST00000189656 - NO_TRANSLATION retained_intron ENSMUSG00000036873 2410004B18Rik ENSMUST00000152783 ENSMUSP00000118224 TRANSLATION nonsense_mediated_decay start - 3 55.0 0.0 0.0 0.0 72.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000062515 Fabp4 ENSMUST00000191757 - NO_TRANSLATION retained_intron ENSMUSG00000062515 Fabp4 ENSMUST00000029041 ENSMUSP00000029041 TRANSLATION protein_coding - CCDS17238.1 1 132.0 20.0 3.25 36.9 94.9 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000025758 Plk4 ENSMUST00000203895 ENSMUSP00000145455 TRANSLATION nonsense_mediated_decay - - 1 146.0 16.0 3.37 0.0 77.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025758 Plk4 ENSMUST00000026858 ENSMUSP00000026858 TRANSLATION protein_coding - CCDS17328.1 1 925.0 19.0 13.01 0.4 278.4 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000025758 Plk4 ENSMUST00000167556 ENSMUSP00000126945 TRANSLATION protein_coding - - 5 922.0 19.0 13.01 0.4 278.4 0.0 -4,-5 0.3593 1 14.0 ALTERNATIVE:2 ENSMUSG00000025758 Plk4 ENSMUST00000204289 - NO_TRANSLATION retained_intron ENSMUSG00000025758 Plk4 ENSMUST00000204473 ENSMUSP00000144693 TRANSLATION protein_coding stop - 5 115.0 16.0 3.165 0.0 78.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025758 Plk4 ENSMUST00000203295 ENSMUSP00000145277 TRANSLATION protein_coding - CCDS57210.1 1 898.0 19.0 12.26 0.0 278.4 0.0 -4,-5 0.2143 1 12.5 MINOR ENSMUSG00000025758 Plk4 ENSMUST00000204594 - NO_TRANSLATION retained_intron ENSMUSG00000025758 Plk4 ENSMUST00000203320 - NO_TRANSLATION retained_intron ENSMUSG00000025758 Plk4 ENSMUST00000204032 ENSMUSP00000145201 TRANSLATION protein_coding start - 3 157.0 0.0 2.8 0.0 37.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025758 Plk4 ENSMUST00000205046 - NO_TRANSLATION retained_intron ENSMUSG00000001419 Mef2d ENSMUST00000152861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001419 Mef2d ENSMUST00000001455 ENSMUSP00000001455 TRANSLATION protein_coding - CCDS38479.1 1 507.0 0.0 1.7 9.2 35.6 0.0 -4,-6 0.8707 6 11.928 MINOR ENSMUSG00000001419 Mef2d ENSMUST00000119251 ENSMUSP00000113638 TRANSLATION protein_coding - - 5 506.0 0.0 1.7 9.2 35.6 0.0 -4,-6 0.7468 6 11.928 MINOR ENSMUSG00000001419 Mef2d ENSMUST00000139153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001419 Mef2d ENSMUST00000107559 ENSMUSP00000103184 TRANSLATION protein_coding - CCDS79939.1 1 514.0 0.0 1.7 8.0 35.6 0.0 -4,-6 0.8146 6 11.49 MINOR ENSMUSG00000001419 Mef2d ENSMUST00000107558 ENSMUSP00000103183 TRANSLATION protein_coding - CCDS79940.1 1 506.0 0.0 1.5 7.4 72.9 0.0 -4,-7 1.0 5 13.632 PRINCIPAL:1 ENSMUSG00000001419 Mef2d ENSMUST00000140927 - NO_TRANSLATION retained_intron ENSMUSG00000042784 Muc1 ENSMUST00000041142 ENSMUSP00000041963 TRANSLATION protein_coding - CCDS17496.1 1 631.0 0.0 1.4 0.0 43.0 0.0 3,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000042784 Muc1 ENSMUST00000146844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042784 Muc1 ENSMUST00000139206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028088 Fmo5 ENSMUST00000107050 ENSMUSP00000102665 TRANSLATION protein_coding - CCDS17656.1 1 533.0 42.0 7.75 15.4 920.4 1.0 -2,-3 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000028088 Fmo5 ENSMUST00000107049 ENSMUSP00000102664 TRANSLATION protein_coding - CCDS17656.1 1 533.0 42.0 7.75 15.4 920.4 1.0 -2,-3 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000028088 Fmo5 ENSMUST00000140283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028088 Fmo5 ENSMUST00000133017 - NO_TRANSLATION retained_intron ENSMUSG00000028088 Fmo5 ENSMUST00000029729 ENSMUSP00000029729 TRANSLATION protein_coding - CCDS17656.1 1 533.0 42.0 7.75 15.4 920.4 1.0 -2,-3 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000028001 Fga ENSMUST00000029630 ENSMUSP00000029630 TRANSLATION protein_coding - CCDS17431.1 1 557.0 0.0 2.8 0.1 251.1 0.0 4,-1 0.044 19 4.002 MINOR ENSMUSG00000028001 Fga ENSMUST00000166581 ENSMUSP00000133117 TRANSLATION protein_coding - CCDS50939.1 5 789.0 10.0 3.8 0.1 498.8 0.0 4,-1 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000027679 Dnajc19 ENSMUST00000108195 ENSMUSP00000103830 TRANSLATION protein_coding - CCDS38412.1 1 116.0 0.0 3.15 34.9 28.1 0.0 0,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027679 Dnajc19 ENSMUST00000117223 ENSMUSP00000113484 TRANSLATION protein_coding - CCDS71233.1 1 130.0 0.0 2.4 0.0 0.0 0.0 0,-5 0.0235 1 4.5 MINOR ENSMUSG00000027679 Dnajc19 ENSMUST00000120805 ENSMUSP00000113514 TRANSLATION protein_coding - CCDS71234.1 2 110.0 0.0 3.05 0.0 28.1 0.0 -4,-2 0.1341 1 11.802 MINOR ENSMUSG00000027679 Dnajc19 ENSMUST00000011029 ENSMUSP00000011029 TRANSLATION protein_coding - CCDS38411.1 1 157.0 0.0 2.4 0.0 0.0 0.0 0,-5 0.0202 1 4.5 MINOR ENSMUSG00000027679 Dnajc19 ENSMUST00000197111 - NO_TRANSLATION retained_intron ENSMUSG00000054325 Lce3a ENSMUST00000067318 ENSMUSP00000066468 TRANSLATION protein_coding - CCDS38519.1 1 98.0 0.0 0.0 0.4 103.7 0.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000038393 Txnip ENSMUST00000128221 - NO_TRANSLATION retained_intron ENSMUSG00000038393 Txnip ENSMUST00000074519 ENSMUSP00000102710 TRANSLATION protein_coding - CCDS38555.1 1 397.0 0.0 5.35 3.2 127.9 0.0 -4,-5 1.0 8 8.957 PRINCIPAL:4 ENSMUSG00000038393 Txnip ENSMUST00000151832 - NO_TRANSLATION retained_intron ENSMUSG00000038393 Txnip ENSMUST00000144639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038393 Txnip ENSMUST00000196871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038393 Txnip ENSMUST00000049093 ENSMUSP00000041467 TRANSLATION protein_coding - CCDS17640.1 1 396.0 0.0 5.35 3.3 127.7 0.0 -4,-6 0.901 8 8.334 ALTERNATIVE:2 ENSMUSG00000087610 Gm16253 ENSMUST00000148290 ENSMUSP00000122904 TRANSLATION protein_coding - - 1 63.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.5842 - 0.0 PRINCIPAL:1 ENSMUSG00000074182 Znhit6 ENSMUST00000197474 - NO_TRANSLATION retained_intron ENSMUSG00000074182 Znhit6 ENSMUST00000200574 ENSMUSP00000143259 TRANSLATION protein_coding stop - 3 128.0 8.0 2.58 0.0 31.6 0.0 -4,-5 0.0061 - -2.0 MINOR ENSMUSG00000074182 Znhit6 ENSMUST00000199033 ENSMUSP00000143306 TRANSLATION protein_coding - CCDS84683.1 1 292.0 8.0 6.83 0.7 31.6 0.0 -4,-5 0.1703 1 14.0 ALTERNATIVE:2 ENSMUSG00000074182 Znhit6 ENSMUST00000197940 ENSMUSP00000142642 TRANSLATION nonsense_mediated_decay - - 5 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000074182 Znhit6 ENSMUST00000197604 ENSMUSP00000143484 TRANSLATION protein_coding stop - 5 185.0 8.0 4.33 0.0 31.6 0.0 -4,-5 0.0046 - -2.0 MINOR ENSMUSG00000074182 Znhit6 ENSMUST00000098534 ENSMUSP00000096136 TRANSLATION protein_coding - CCDS38662.1 1 460.0 8.0 6.83 0.1 31.6 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:2 ENSMUSG00000074182 Znhit6 ENSMUST00000196413 ENSMUSP00000143376 TRANSLATION protein_coding stop - 5 231.0 8.0 5.08 0.0 31.6 0.0 -4,-5 0.0081 - -2.0 MINOR ENSMUSG00000027534 Snx16 ENSMUST00000029047 ENSMUSP00000029047 TRANSLATION protein_coding - CCDS17244.1 1 344.0 0.0 3.9 15.2 70.2 0.0 -4,-7 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000027534 Snx16 ENSMUST00000099223 ENSMUSP00000096828 TRANSLATION protein_coding - CCDS50862.1 1 304.0 0.0 3.7 3.2 70.2 0.0 -4,-7 0.2661 8 12.218 MINOR ENSMUSG00000027534 Snx16 ENSMUST00000195822 ENSMUSP00000141230 TRANSLATION protein_coding - - 1 202.0 0.0 1.2 0.0 0.0 0.0 -4,-7 0.0 6 0.6 MINOR ENSMUSG00000027861 Casq2 ENSMUST00000159521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027861 Casq2 ENSMUST00000164123 ENSMUSP00000131232 TRANSLATION protein_coding stop - 5 312.0 0.0 7.25 0.0 578.6 0.0 3,-2 0.0141 7 -2.0 MINOR ENSMUSG00000027861 Casq2 ENSMUST00000029454 ENSMUSP00000029454 TRANSLATION protein_coding - CCDS51023.1 1 415.0 0.0 9.25 0.0 741.6 0.0 3,-2 0.8599 10 8.0 PRINCIPAL:4 ENSMUSG00000027861 Casq2 ENSMUST00000159833 - NO_TRANSLATION retained_intron ENSMUSG00000027861 Casq2 ENSMUST00000165540 ENSMUSP00000130482 TRANSLATION protein_coding - - 1 418.0 0.0 9.25 0.0 733.7 0.0 3,-2 0.7567 10 8.0 ALTERNATIVE:2 ENSMUSG00000033502 Cdc14a ENSMUST00000148857 - NO_TRANSLATION retained_intron ENSMUSG00000033502 Cdc14a ENSMUST00000197830 ENSMUSP00000142479 TRANSLATION nonsense_mediated_decay start - 5 36.0 0.0 0.75 0.0 28.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000033502 Cdc14a ENSMUST00000090464 ENSMUSP00000087950 TRANSLATION protein_coding - CCDS38611.1 1 603.0 11.0 8.91 3.0 260.4 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000033502 Cdc14a ENSMUST00000106491 ENSMUSP00000102100 TRANSLATION protein_coding - CCDS51058.1 1 554.0 11.0 7.41 0.0 186.0 0.0 -4,-5 0.004 1 10.536 MINOR ENSMUSG00000033502 Cdc14a ENSMUST00000136994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033502 Cdc14a ENSMUST00000239145 ENSMUSP00000159189 TRANSLATION protein_coding - - - 574.0 11.0 7.43 3.0 178.2 0.0 -4,-2 0.2454 2 11.11 MINOR ENSMUSG00000033502 Cdc14a ENSMUST00000127704 - NO_TRANSLATION retained_intron ENSMUSG00000033502 Cdc14a ENSMUST00000199454 - NO_TRANSLATION retained_intron ENSMUSG00000040209 Zfp704 ENSMUST00000192832 - NO_TRANSLATION retained_intron ENSMUSG00000040209 Zfp704 ENSMUST00000041124 ENSMUSP00000041242 TRANSLATION protein_coding - CCDS17234.1 1 566.0 4.0 0.0 0.0 0.0 0.0 -4,0 0.888 3 4.0 PRINCIPAL:1 ENSMUSG00000040209 Zfp704 ENSMUST00000193947 ENSMUSP00000141598 TRANSLATION protein_coding start - 1 505.0 4.0 0.0 0.0 0.0 0.0 -4,-7 0.0806 3 -2.0 MINOR ENSMUSG00000027831 Veph1 ENSMUST00000029419 ENSMUSP00000029419 TRANSLATION protein_coding - CCDS17391.1 1 833.0 0.0 0.0 12.5 46.6 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000027831 Veph1 ENSMUST00000182815 - NO_TRANSLATION retained_intron ENSMUSG00000027831 Veph1 ENSMUST00000107837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038403 Hjv ENSMUST00000049208 ENSMUSP00000046659 TRANSLATION protein_coding - CCDS51003.1 1 420.0 0.0 0.8 0.0 391.3 0.0 0,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000042390 Gatad2b ENSMUST00000199607 ENSMUSP00000142617 TRANSLATION protein_coding - CCDS17526.1 5 594.0 5.0 1.0 18.5 102.3 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000042390 Gatad2b ENSMUST00000199754 ENSMUSP00000142514 TRANSLATION protein_coding - CCDS17526.1 5 594.0 5.0 1.0 18.5 102.3 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000042390 Gatad2b ENSMUST00000206907 ENSMUSP00000145623 TRANSLATION protein_coding start/stop - 5 263.0 5.0 0.0 0.0 38.0 0.0 -4,-2 0.0008 8 -2.0 MINOR ENSMUSG00000042390 Gatad2b ENSMUST00000205797 - NO_TRANSLATION retained_intron ENSMUSG00000042390 Gatad2b ENSMUST00000200373 - NO_TRANSLATION retained_intron ENSMUSG00000042390 Gatad2b ENSMUST00000196212 - NO_TRANSLATION retained_intron ENSMUSG00000042390 Gatad2b ENSMUST00000197988 ENSMUSP00000143085 TRANSLATION protein_coding - - 1 578.0 5.0 1.0 0.7 102.3 0.0 -4,-5 0.1989 15 17.0 MINOR ENSMUSG00000042390 Gatad2b ENSMUST00000049382 ENSMUSP00000041370 TRANSLATION protein_coding - CCDS17526.1 1 594.0 5.0 1.0 18.5 102.3 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000028137 Celf3 ENSMUST00000198796 - NO_TRANSLATION retained_intron ENSMUSG00000028137 Celf3 ENSMUST00000199884 ENSMUSP00000142967 TRANSLATION protein_coding stop - 2 31.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028137 Celf3 ENSMUST00000197033 - NO_TRANSLATION retained_intron ENSMUSG00000028137 Celf3 ENSMUST00000197677 ENSMUSP00000143089 TRANSLATION protein_coding stop - 3 182.0 0.0 3.3 0.0 58.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028137 Celf3 ENSMUST00000200342 ENSMUSP00000143344 TRANSLATION protein_coding - CCDS79972.1 1 494.0 0.0 7.656 0.1 177.3 0.0 -4,-5 0.2316 1 12.0 MINOR ENSMUSG00000028137 Celf3 ENSMUST00000198384 ENSMUSP00000142542 TRANSLATION protein_coding stop - 5 231.0 0.0 3.366 0.0 58.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028137 Celf3 ENSMUST00000199775 ENSMUSP00000143532 TRANSLATION protein_coding - - 5 416.0 0.0 7.556 5.4 177.3 0.0 -4,-5 0.6266 1 13.236 MINOR ENSMUSG00000028137 Celf3 ENSMUST00000029784 ENSMUSP00000029784 TRANSLATION protein_coding - CCDS38536.1 1 465.0 0.0 7.656 10.2 177.3 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000028137 Celf3 ENSMUST00000197558 ENSMUSP00000143733 TRANSLATION protein_coding - CCDS79973.1 1 370.0 0.0 5.826 0.7 129.9 0.0 -4,-5 0.0099 1 5.496 MINOR ENSMUSG00000028137 Celf3 ENSMUST00000198067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028137 Celf3 ENSMUST00000199159 - NO_TRANSLATION retained_intron ENSMUSG00000028137 Celf3 ENSMUST00000198316 ENSMUSP00000142412 TRANSLATION protein_coding - CCDS79974.1 1 389.0 0.0 5.906 6.8 129.9 0.0 -4,-5 0.322 1 7.548 MINOR ENSMUSG00000028137 Celf3 ENSMUST00000199148 - NO_TRANSLATION retained_intron ENSMUSG00000028137 Celf3 ENSMUST00000197699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028137 Celf3 ENSMUST00000196985 - NO_TRANSLATION retained_intron ENSMUSG00000100962 Gm29133 ENSMUST00000189155 ENSMUSP00000148230 TRANSLATION protein_coding - - 5 273.0 0.0 3.0 0.1 0.0 0.0 -4,-5 0.6663 - 6.0 PRINCIPAL:1 ENSMUSG00000037225 Fgf2 ENSMUST00000138563 ENSMUSP00000122227 TRANSLATION protein_coding - CCDS17320.1 5 154.0 9.0 3.0 29.8 145.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:4 ENSMUSG00000037225 Fgf2 ENSMUST00000199938 - NO_TRANSLATION retained_intron ENSMUSG00000037225 Fgf2 ENSMUST00000145228 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037225 Fgf2 ENSMUST00000038885 ENSMUSP00000037694 TRANSLATION protein_coding - - 1 153.0 9.0 3.0 29.8 137.5 0.0 -4,-5 0.849 4 18.0 ALTERNATIVE:1 ENSMUSG00000037225 Fgf2 ENSMUST00000091203 ENSMUSP00000088742 TRANSLATION protein_coding - - 1 112.0 9.0 2.25 0.0 107.6 0.0 -4,-6 0.0005 4 10.5 MINOR ENSMUSG00000037225 Fgf2 ENSMUST00000150021 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037225 Fgf2 ENSMUST00000108120 ENSMUSP00000103755 TRANSLATION protein_coding - - 1 109.0 8.0 2.25 0.0 106.9 0.0 -4,-5 0.0 4 9.834 MINOR ENSMUSG00000037225 Fgf2 ENSMUST00000200585 ENSMUSP00000143094 TRANSLATION protein_coding - CCDS17320.1 1 154.0 9.0 3.0 29.8 145.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:4 ENSMUSG00000040329 Il7 ENSMUST00000168269 ENSMUSP00000126219 TRANSLATION protein_coding - CCDS84608.1 1 113.0 0.0 2.26 0.0 140.0 0.0 -4,-5 0.0096 - 10.044 MINOR ENSMUSG00000040329 Il7 ENSMUST00000192202 ENSMUSP00000141508 TRANSLATION protein_coding - CCDS84608.1 1 113.0 0.0 2.26 0.0 140.0 0.0 -4,-5 0.0096 - 10.044 MINOR ENSMUSG00000040329 Il7 ENSMUST00000194184 ENSMUSP00000141827 TRANSLATION protein_coding - CCDS84608.1 1 113.0 0.0 2.26 0.0 140.0 0.0 -4,-5 0.0096 - 10.044 MINOR ENSMUSG00000040329 Il7 ENSMUST00000191681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040329 Il7 ENSMUST00000194279 ENSMUSP00000141845 TRANSLATION protein_coding - CCDS50859.1 1 154.0 0.0 2.66 5.2 157.6 0.0 1,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028069 Gpatch4 ENSMUST00000029707 ENSMUSP00000029707 TRANSLATION protein_coding - CCDS50948.1 1 415.0 0.0 0.0 0.0 37.6 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000028069 Gpatch4 ENSMUST00000166021 ENSMUSP00000132699 TRANSLATION protein_coding - CCDS50948.1 5 415.0 0.0 0.0 0.0 37.6 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000028069 Gpatch4 ENSMUST00000194258 ENSMUSP00000141477 TRANSLATION protein_coding stop - 5 239.0 0.0 0.0 0.0 37.6 0.0 -4,-5 0.0504 4 -2.0 MINOR ENSMUSG00000028069 Gpatch4 ENSMUST00000193398 ENSMUSP00000141786 TRANSLATION protein_coding - CCDS50948.1 1 415.0 0.0 0.0 0.0 37.6 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000028069 Gpatch4 ENSMUST00000194380 - NO_TRANSLATION retained_intron ENSMUSG00000060256 Tdpoz4 ENSMUST00000075953 ENSMUSP00000075338 TRANSLATION protein_coding - CCDS38528.1 - 370.0 0.0 0.64 0.0 100.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044167 Foxo1 ENSMUST00000053764 ENSMUSP00000055308 TRANSLATION protein_coding - CCDS17343.1 1 652.0 0.0 0.5 3.1 258.6 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000074206 Adh6b ENSMUST00000199673 ENSMUSP00000148703 TRANSLATION protein_coding - - 5 384.0 31.0 7.28 2.9 76.6 0.0 -4,-7 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000074206 Adh6b ENSMUST00000199718 - NO_TRANSLATION retained_intron ENSMUSG00000074206 Adh6b ENSMUST00000090166 ENSMUSP00000148627 TRANSLATION protein_coding start - 2 253.0 20.0 4.0 0.0 76.6 0.0 -4,-7 0.0232 - -2.0 MINOR ENSMUSG00000053870 Fpgt ENSMUST00000195505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053870 Fpgt ENSMUST00000193071 - NO_TRANSLATION retained_intron ENSMUSG00000053870 Fpgt ENSMUST00000192959 - NO_TRANSLATION retained_intron ENSMUSG00000053870 Fpgt ENSMUST00000194095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053870 Fpgt ENSMUST00000192247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053870 Fpgt ENSMUST00000066568 ENSMUSP00000068939 TRANSLATION protein_coding - CCDS38681.1 1 590.0 0.0 3.25 0.4 482.1 0.0 -4,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000086848 Lce6a ENSMUST00000138403 ENSMUSP00000114595 TRANSLATION protein_coding - CCDS50976.1 5 81.0 0.0 0.0 0.4 142.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000086848 Lce6a ENSMUST00000170676 ENSMUSP00000128725 TRANSLATION protein_coding - CCDS50976.1 1 81.0 0.0 0.0 0.4 142.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074195 Clca4b ENSMUST00000098549 ENSMUSP00000096149 TRANSLATION protein_coding - CCDS38660.1 1 925.0 3.0 6.4 1.2 521.2 0.0 2,-3 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000027787 Nmd3 ENSMUST00000127211 - NO_TRANSLATION retained_intron ENSMUSG00000027787 Nmd3 ENSMUST00000135266 ENSMUSP00000142290 TRANSLATION nonsense_mediated_decay - - 3 144.0 6.0 2.9 0.0 99.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000027787 Nmd3 ENSMUST00000143249 ENSMUSP00000115736 TRANSLATION protein_coding stop - 3 76.0 6.0 1.65 0.0 47.7 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000027787 Nmd3 ENSMUST00000150210 - NO_TRANSLATION retained_intron ENSMUSG00000027787 Nmd3 ENSMUST00000029358 ENSMUSP00000029358 TRANSLATION protein_coding - CCDS17407.1 1 503.0 6.0 12.15 31.8 264.1 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000027787 Nmd3 ENSMUST00000194168 - NO_TRANSLATION retained_intron ENSMUSG00000027787 Nmd3 ENSMUST00000149680 - NO_TRANSLATION retained_intron ENSMUSG00000027787 Nmd3 ENSMUST00000143041 ENSMUSP00000116113 TRANSLATION nonsense_mediated_decay - - 2 36.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027968 Larp7 ENSMUST00000197668 ENSMUSP00000143331 TRANSLATION protein_coding stop - 3 80.0 0.0 1.5 0.0 72.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027968 Larp7 ENSMUST00000197698 - NO_TRANSLATION retained_intron ENSMUSG00000027968 Larp7 ENSMUST00000029588 ENSMUSP00000029588 TRANSLATION protein_coding - CCDS38626.1 5 570.0 0.0 7.3 0.1 237.9 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000027968 Larp7 ENSMUST00000195976 - NO_TRANSLATION retained_intron ENSMUSG00000078161 Erich3 ENSMUST00000189969 ENSMUSP00000140929 TRANSLATION protein_coding start - - 164.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000078161 Erich3 ENSMUST00000192912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078161 Erich3 ENSMUST00000051862 ENSMUSP00000062837 TRANSLATION protein_coding - CCDS51099.1 1 517.0 0.0 0.0 0.0 184.4 0.0 -4,-6 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000078161 Erich3 ENSMUST00000098496 ENSMUSP00000096097 TRANSLATION protein_coding - - 5 1637.0 0.0 0.0 0.0 184.4 0.0 -4,-6 0.3982 8 2.0 ALTERNATIVE:2 ENSMUSG00000044667 Plppr4 ENSMUST00000061071 ENSMUSP00000052306 TRANSLATION protein_coding - CCDS17795.1 1 766.0 0.0 2.146 4.7 63.0 6.0 -4,-7 1.0 22 14.0 PRINCIPAL:1 ENSMUSG00000044667 Plppr4 ENSMUST00000125664 - NO_TRANSLATION retained_intron ENSMUSG00000044667 Plppr4 ENSMUST00000197743 ENSMUSP00000143753 TRANSLATION protein_coding stop - 5 707.0 0.0 1.546 2.1 27.5 4.0 -4,-7 0.2142 22 -2.0 MINOR ENSMUSG00000027835 Pdcd10 ENSMUST00000162138 ENSMUSP00000124421 TRANSLATION protein_coding stop - 3 66.0 0.0 2.0 0.0 57.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000027835 Pdcd10 ENSMUST00000160196 - NO_TRANSLATION retained_intron ENSMUSG00000027835 Pdcd10 ENSMUST00000161137 ENSMUSP00000125752 TRANSLATION protein_coding - CCDS17414.1 1 212.0 0.0 6.0 36.9 212.1 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000027835 Pdcd10 ENSMUST00000159217 - NO_TRANSLATION retained_intron ENSMUSG00000027835 Pdcd10 ENSMUST00000029424 ENSMUSP00000029424 TRANSLATION protein_coding - - 5 149.0 0.0 4.0 0.0 143.5 0.0 -4,-5 0.0 6 3.882 MINOR ENSMUSG00000027835 Pdcd10 ENSMUST00000159519 - NO_TRANSLATION retained_intron ENSMUSG00000103476 Strit1 ENSMUST00000192926 ENSMUSP00000147363 TRANSLATION protein_coding - - 5 34.0 0.0 0.75 5.9 0.0 0.0 -3,-5 0.9547 - 8.0 PRINCIPAL:1 ENSMUSG00000050549 Fam241a ENSMUST00000057198 ENSMUSP00000062387 TRANSLATION protein_coding - - 1 62.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000050549 Fam241a ENSMUST00000199273 ENSMUSP00000142535 TRANSLATION protein_coding - CCDS17829.1 1 131.0 0.0 0.0 3.2 88.2 0.0 -4,-6 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000036960 Clca2 ENSMUST00000198993 ENSMUSP00000143161 TRANSLATION protein_coding - - 1 674.0 0.0 5.52 0.0 402.9 0.0 -3,-5 0.0548 8 12.0 MINOR ENSMUSG00000036960 Clca2 ENSMUST00000197121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036960 Clca2 ENSMUST00000040465 ENSMUSP00000036029 TRANSLATION protein_coding - CCDS17890.1 1 942.0 0.0 5.52 7.1 402.9 0.0 -3,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000050092 Sprr2b ENSMUST00000061038 ENSMUSP00000058131 TRANSLATION protein_coding - CCDS38509.1 1 98.0 0.0 0.0 0.0 50.8 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000037818 Abhd18 ENSMUST00000204496 ENSMUSP00000145007 TRANSLATION nonsense_mediated_decay - - 5 68.0 0.0 0.6 0.0 51.8 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000037818 Abhd18 ENSMUST00000204797 - NO_TRANSLATION retained_intron ENSMUSG00000037818 Abhd18 ENSMUST00000203214 ENSMUSP00000144946 TRANSLATION nonsense_mediated_decay - - 5 65.0 0.0 0.6 0.0 50.3 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000037818 Abhd18 ENSMUST00000203892 ENSMUSP00000145150 TRANSLATION protein_coding - - 1 151.0 0.0 1.758 0.0 207.6 0.0 -4,-1 0.0 - 1.338 MINOR ENSMUSG00000037818 Abhd18 ENSMUST00000108078 ENSMUSP00000103713 TRANSLATION protein_coding - - 1 464.0 3.0 4.088 10.7 558.5 0.0 -4,-1 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000037818 Abhd18 ENSMUST00000203472 ENSMUSP00000145313 TRANSLATION protein_coding - - 1 75.0 0.0 0.958 0.0 115.7 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000037818 Abhd18 ENSMUST00000159774 ENSMUSP00000124430 TRANSLATION protein_coding - - 5 464.0 3.0 4.088 10.7 558.5 0.0 -4,-1 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000037818 Abhd18 ENSMUST00000205065 ENSMUSP00000145095 TRANSLATION nonsense_mediated_decay - - 1 151.0 0.0 1.758 0.0 207.6 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000037818 Abhd18 ENSMUST00000203650 ENSMUSP00000145006 TRANSLATION protein_coding - - 5 130.0 1.0 2.288 0.0 227.4 0.0 -4,-7 0.0 1 3.399 MINOR ENSMUSG00000037818 Abhd18 ENSMUST00000204464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001420 Tmem79 ENSMUST00000107553 ENSMUSP00000103177 TRANSLATION protein_coding - CCDS17470.1 1 391.0 0.0 0.0 10.7 0.0 4.0 -4,-5 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000001420 Tmem79 ENSMUST00000001456 ENSMUSP00000001456 TRANSLATION protein_coding - CCDS17470.1 1 391.0 0.0 0.0 10.7 0.0 4.0 -4,-5 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000001420 Tmem79 ENSMUST00000193872 ENSMUSP00000141830 TRANSLATION protein_coding stop - 3 167.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0114 1 -2.0 MINOR ENSMUSG00000001420 Tmem79 ENSMUST00000107552 ENSMUSP00000103176 TRANSLATION protein_coding - CCDS17470.1 5 391.0 0.0 0.0 10.7 0.0 4.0 -4,-5 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000027804 Ppid ENSMUST00000029382 ENSMUSP00000029382 TRANSLATION protein_coding - CCDS17417.1 1 370.0 9.0 9.25 27.4 176.5 0.0 -4,-7 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000027804 Ppid ENSMUST00000159505 ENSMUSP00000141423 TRANSLATION nonsense_mediated_decay start - 3 73.0 5.0 2.05 0.0 37.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000027804 Ppid ENSMUST00000160799 - NO_TRANSLATION retained_intron ENSMUSG00000027804 Ppid ENSMUST00000161876 - NO_TRANSLATION retained_intron ENSMUSG00000027804 Ppid ENSMUST00000161460 - NO_TRANSLATION retained_intron ENSMUSG00000027804 Ppid ENSMUST00000162690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033342 Plppr5 ENSMUST00000239347 ENSMUSP00000159234 TRANSLATION protein_coding - - - 260.0 3.0 1.7 0.0 77.8 5.0 -4,-7 0.0449 2 8.37 MINOR ENSMUSG00000033342 Plppr5 ENSMUST00000238937 ENSMUSP00000159092 TRANSLATION protein_coding - - - 379.0 3.0 1.9 0.0 77.8 8.0 0,-4 0.1024 1 9.0 MINOR ENSMUSG00000033342 Plppr5 ENSMUST00000039564 ENSMUSP00000045121 TRANSLATION protein_coding - CCDS17796.1 1 316.0 3.0 1.9 8.4 77.8 8.0 0,-4 1.0 2 12.0 ALTERNATIVE:1 ENSMUSG00000033342 Plppr5 ENSMUST00000106473 ENSMUSP00000102081 TRANSLATION protein_coding - CCDS80009.1 1 321.0 3.0 1.9 8.4 77.8 8.0 0,-4 0.9718 3 12.0 PRINCIPAL:3 ENSMUSG00000080907 4930455H04Rik ENSMUST00000117592 ENSMUSP00000113404 TRANSLATION protein_coding - - 1 58.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5648 - 0.0 PRINCIPAL:1 ENSMUSG00000074604 Mgst2 ENSMUST00000161230 - NO_TRANSLATION retained_intron ENSMUSG00000074604 Mgst2 ENSMUST00000195423 - NO_TRANSLATION retained_intron ENSMUSG00000074604 Mgst2 ENSMUST00000162125 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074604 Mgst2 ENSMUST00000160753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074604 Mgst2 ENSMUST00000161627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074604 Mgst2 ENSMUST00000161590 ENSMUSP00000125670 TRANSLATION protein_coding - - 3 77.0 0.0 2.05 3.2 0.0 1.0 -2,-5 0.046 - 1.394 MINOR ENSMUSG00000074604 Mgst2 ENSMUST00000099106 ENSMUSP00000096705 TRANSLATION protein_coding - CCDS38428.1 1 147.0 7.0 4.58 20.5 61.6 4.0 -2,-3 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000074604 Mgst2 ENSMUST00000159400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074604 Mgst2 ENSMUST00000159554 ENSMUSP00000141745 TRANSLATION protein_coding - CCDS79903.1 1 82.0 4.0 2.5 0.0 36.3 2.0 -2,-4 0.0086 - 8.802 MINOR ENSMUSG00000053931 Cnn3 ENSMUST00000198649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053931 Cnn3 ENSMUST00000196671 - NO_TRANSLATION retained_intron ENSMUSG00000053931 Cnn3 ENSMUST00000198393 ENSMUSP00000143186 TRANSLATION protein_coding stop - 2 139.0 0.0 3.064 0.0 114.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000053931 Cnn3 ENSMUST00000198620 ENSMUSP00000143122 TRANSLATION protein_coding start - 3 49.0 0.0 0.0 0.0 42.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053931 Cnn3 ENSMUST00000199188 - NO_TRANSLATION retained_intron ENSMUSG00000053931 Cnn3 ENSMUST00000199499 ENSMUSP00000143159 TRANSLATION protein_coding start - 5 50.0 0.0 0.0 0.0 45.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053931 Cnn3 ENSMUST00000197135 ENSMUSP00000142526 TRANSLATION protein_coding - - 5 284.0 0.0 4.214 1.0 207.2 0.0 -4,-5 0.0071 9 6.642 MINOR ENSMUSG00000053931 Cnn3 ENSMUST00000029773 ENSMUSP00000029773 TRANSLATION protein_coding - CCDS17802.1 1 330.0 0.0 5.714 25.1 246.5 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000033882 Rbm46 ENSMUST00000182818 ENSMUSP00000138429 TRANSLATION protein_coding - CCDS71255.1 5 485.0 0.0 2.3 12.1 218.5 0.0 -4,-5 0.9078 2 11.264 ALTERNATIVE:1 ENSMUSG00000033882 Rbm46 ENSMUST00000048647 ENSMUSP00000045511 TRANSLATION protein_coding - CCDS50938.1 5 533.0 0.0 2.3 14.6 218.5 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000033882 Rbm46 ENSMUST00000182637 ENSMUSP00000138728 TRANSLATION protein_coding - - 5 470.0 0.0 2.3 3.1 218.6 0.0 -4,-5 0.2258 2 8.616 MINOR ENSMUSG00000078657 Crnn ENSMUST00000192372 ENSMUSP00000141904 TRANSLATION protein_coding start - 5 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 2 -2.0 MINOR ENSMUSG00000078657 Crnn ENSMUST00000195515 ENSMUSP00000141980 TRANSLATION protein_coding - CCDS38524.1 5 520.0 7.0 2.0 0.0 38.1 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000078657 Crnn ENSMUST00000107300 ENSMUSP00000102921 TRANSLATION protein_coding - CCDS38524.1 3 520.0 7.0 2.0 0.0 38.1 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000038354 Ankrd35 ENSMUST00000048427 ENSMUSP00000047244 TRANSLATION protein_coding - CCDS38558.1 1 996.0 0.0 5.1 3.5 121.0 0.0 -4,-7 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000038354 Ankrd35 ENSMUST00000130429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038354 Ankrd35 ENSMUST00000122960 ENSMUSP00000115316 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000063052 Lrrc40 ENSMUST00000123028 ENSMUSP00000121905 TRANSLATION nonsense_mediated_decay start - 5 68.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000063052 Lrrc40 ENSMUST00000072080 ENSMUSP00000071956 TRANSLATION protein_coding - CCDS17935.1 1 602.0 0.0 9.982 19.4 174.9 0.0 -4,-2 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000063052 Lrrc40 ENSMUST00000199290 - NO_TRANSLATION retained_intron ENSMUSG00000063052 Lrrc40 ENSMUST00000132530 - NO_TRANSLATION retained_intron ENSMUSG00000063052 Lrrc40 ENSMUST00000131518 ENSMUSP00000121417 TRANSLATION nonsense_mediated_decay start - 3 114.0 0.0 1.03 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000063052 Lrrc40 ENSMUST00000200540 ENSMUSP00000143518 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 0.53 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000063052 Lrrc40 ENSMUST00000156597 ENSMUSP00000117093 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 0.53 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000063052 Lrrc40 ENSMUST00000150525 ENSMUSP00000116475 TRANSLATION nonsense_mediated_decay - - 1 131.0 0.0 1.03 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000048031 Fcrl5 ENSMUST00000194102 ENSMUSP00000142210 TRANSLATION protein_coding - CCDS50943.1 1 596.0 0.0 4.663 0.0 145.7 0.0 3,-2 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000048031 Fcrl5 ENSMUST00000178261 ENSMUSP00000136046 TRANSLATION protein_coding - - 5 596.0 0.0 4.663 0.0 145.7 0.0 2,-3 0.6448 2 8.0 ALTERNATIVE:2 ENSMUSG00000048031 Fcrl5 ENSMUST00000166297 ENSMUSP00000131176 TRANSLATION protein_coding - CCDS50944.1 5 508.0 0.0 4.063 0.0 145.7 0.0 2,-2 0.1651 2 6.8 MINOR ENSMUSG00000048031 Fcrl5 ENSMUST00000049926 ENSMUSP00000050151 TRANSLATION protein_coding - CCDS50943.1 5 596.0 0.0 4.663 0.0 145.7 0.0 3,-2 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000048031 Fcrl5 ENSMUST00000193229 ENSMUSP00000141311 TRANSLATION protein_coding - CCDS50944.1 1 508.0 0.0 4.063 0.0 145.7 0.0 2,-2 0.1651 2 6.8 MINOR ENSMUSG00000028163 Nfkb1 ENSMUST00000129428 - NO_TRANSLATION retained_intron ENSMUSG00000028163 Nfkb1 ENSMUST00000138602 - NO_TRANSLATION retained_intron ENSMUSG00000028163 Nfkb1 ENSMUST00000029812 ENSMUSP00000029812 TRANSLATION protein_coding - CCDS17858.1 1 971.0 0.0 14.835 1.5 506.8 0.0 -4,-5 1.0 20 13.0 PRINCIPAL:1 ENSMUSG00000028163 Nfkb1 ENSMUST00000196469 ENSMUSP00000143601 TRANSLATION nonsense_mediated_decay - - 1 128.0 0.0 1.566 0.0 69.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028163 Nfkb1 ENSMUST00000184550 ENSMUSP00000139044 TRANSLATION nonsense_mediated_decay start - 1 270.0 0.0 4.2 0.0 85.2 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000028163 Nfkb1 ENSMUST00000150007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028163 Nfkb1 ENSMUST00000132668 ENSMUSP00000114798 TRANSLATION protein_coding start - 5 534.0 0.0 6.075 0.0 85.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028163 Nfkb1 ENSMUST00000199588 - NO_TRANSLATION retained_intron ENSMUSG00000028163 Nfkb1 ENSMUST00000196246 - NO_TRANSLATION retained_intron ENSMUSG00000028163 Nfkb1 ENSMUST00000164430 ENSMUSP00000128345 TRANSLATION protein_coding - CCDS17858.1 1 971.0 0.0 14.835 1.5 506.8 0.0 -4,-5 1.0 20 13.0 PRINCIPAL:1 ENSMUSG00000017688 Hnf4g ENSMUST00000108394 ENSMUSP00000104031 TRANSLATION protein_coding - - 5 462.0 25.0 6.8 8.2 238.9 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000017688 Hnf4g ENSMUST00000108393 ENSMUSP00000104030 TRANSLATION protein_coding - CCDS17226.1 1 418.0 25.0 6.8 0.1 238.9 0.0 -4,-5 0.2497 5 18.0 MINOR ENSMUSG00000049796 Crh ENSMUST00000061294 ENSMUSP00000061185 TRANSLATION protein_coding - CCDS17258.1 1 187.0 0.0 0.4 5.2 59.4 0.0 2,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000036334 Igsf10 ENSMUST00000039419 ENSMUSP00000037246 TRANSLATION protein_coding - CCDS50915.1 5 2594.0 0.0 2.87 0.0 587.0 0.0 -1,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000036334 Igsf10 ENSMUST00000194546 ENSMUSP00000141391 TRANSLATION protein_coding - CCDS50915.1 5 2594.0 0.0 2.87 0.0 587.0 0.0 -1,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000036334 Igsf10 ENSMUST00000193455 ENSMUSP00000141971 TRANSLATION protein_coding - CCDS50915.1 5 2594.0 0.0 2.87 0.0 587.0 0.0 -1,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000036334 Igsf10 ENSMUST00000195983 ENSMUSP00000143071 TRANSLATION protein_coding stop - 3 76.0 0.0 0.764 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000056025 Clca3a1 ENSMUST00000059091 ENSMUSP00000054526 TRANSLATION protein_coding - CCDS17886.1 1 902.0 5.0 7.0 2.3 513.8 0.0 4,-1 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000056025 Clca3a1 ENSMUST00000029932 ENSMUSP00000029932 TRANSLATION nonsense_mediated_decay - - 1 513.0 5.0 7.0 0.0 510.0 0.0 4,-1 0.0902 3 -2.0 MINOR ENSMUSG00000102758 Naaladl2 ENSMUST00000203997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102758 Naaladl2 ENSMUST00000204227 - NO_TRANSLATION retained_intron ENSMUSG00000102758 Naaladl2 ENSMUST00000203414 ENSMUSP00000144706 TRANSLATION protein_coding - CCDS84612.1 5 795.0 5.0 4.492 13.0 0.0 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000102758 Naaladl2 ENSMUST00000192246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015749 Anp32e ENSMUST00000167876 ENSMUSP00000132580 TRANSLATION protein_coding stop - 3 171.0 0.0 3.916 0.0 38.3 0.0 -4,-6 0.0016 5 -2.0 MINOR ENSMUSG00000015749 Anp32e ENSMUST00000169426 ENSMUSP00000142810 TRANSLATION protein_coding - - 5 71.0 0.0 0.656 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000015749 Anp32e ENSMUST00000015893 ENSMUSP00000015893 TRANSLATION protein_coding - CCDS57238.1 1 248.0 0.0 5.065 0.0 38.3 0.0 -4,-5 0.101 5 7.118 ALTERNATIVE:2 ENSMUSG00000015749 Anp32e ENSMUST00000170213 ENSMUSP00000131777 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015749 Anp32e ENSMUST00000171368 ENSMUSP00000130599 TRANSLATION protein_coding - CCDS57239.1 3 137.0 0.0 1.756 0.0 0.0 0.0 -4,-5 0.025 1 0.0 MINOR ENSMUSG00000015749 Anp32e ENSMUST00000170125 ENSMUSP00000129931 TRANSLATION protein_coding - - 3 109.0 0.0 2.34 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000015749 Anp32e ENSMUST00000168471 - NO_TRANSLATION retained_intron ENSMUSG00000015749 Anp32e ENSMUST00000171035 ENSMUSP00000128298 TRANSLATION protein_coding stop - 3 107.0 0.0 3.25 0.0 38.3 0.0 -4,-6 0.0024 5 -2.0 MINOR ENSMUSG00000015749 Anp32e ENSMUST00000165307 ENSMUSP00000128483 TRANSLATION protein_coding - CCDS17626.1 1 260.0 0.0 5.506 0.0 38.3 0.0 -4,-5 1.0 6 8.0 PRINCIPAL:2 ENSMUSG00000015749 Anp32e ENSMUST00000168106 ENSMUSP00000132357 TRANSLATION protein_coding - - 5 219.0 0.0 4.506 0.0 0.0 0.0 -4,-5 0.0 2 4.002 MINOR ENSMUSG00000027536 Chmp4c ENSMUST00000191826 ENSMUSP00000141606 TRANSLATION nonsense_mediated_decay - - 2 65.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000027536 Chmp4c ENSMUST00000029049 ENSMUSP00000029049 TRANSLATION protein_coding - CCDS17243.1 1 232.0 0.0 3.0 11.4 178.7 0.0 -4,0 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000046561 Arsj ENSMUST00000093976 ENSMUSP00000091511 TRANSLATION protein_coding - CCDS17822.1 1 598.0 5.0 1.24 2.0 222.0 0.0 -3,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028191 Bcl10 ENSMUST00000198122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028191 Bcl10 ENSMUST00000197842 - NO_TRANSLATION retained_intron ENSMUSG00000028191 Bcl10 ENSMUST00000029842 ENSMUSP00000029842 TRANSLATION protein_coding - CCDS17897.1 1 233.0 0.0 1.5 11.1 63.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000043164 Tmem212 ENSMUST00000058077 ENSMUSP00000049832 TRANSLATION protein_coding - CCDS50876.1 1 187.0 0.0 0.0 10.7 0.0 0.0 1,-4 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000027601 Mtfr1 ENSMUST00000119865 ENSMUSP00000112752 TRANSLATION protein_coding - CCDS17256.1 1 328.0 0.0 0.0 7.1 270.3 0.0 -2,-2 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000027601 Mtfr1 ENSMUST00000131053 - NO_TRANSLATION retained_intron ENSMUSG00000027601 Mtfr1 ENSMUST00000138777 ENSMUSP00000115983 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.0 0.0 0.0 0.0 -2,-1 0.0 - -2.0 MINOR ENSMUSG00000027601 Mtfr1 ENSMUST00000130645 ENSMUSP00000119724 TRANSLATION protein_coding - CCDS17256.1 1 328.0 0.0 0.0 7.1 270.3 0.0 -2,-2 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000027601 Mtfr1 ENSMUST00000130806 ENSMUSP00000123464 TRANSLATION protein_coding stop - 3 168.0 0.0 0.0 0.0 192.0 0.0 -2,-2 0.0 3 -2.0 MINOR ENSMUSG00000027601 Mtfr1 ENSMUST00000132035 ENSMUSP00000117132 TRANSLATION protein_coding stop - 5 83.0 0.0 0.0 0.0 91.1 0.0 -2,-2 0.0003 1 -2.0 MINOR ENSMUSG00000027601 Mtfr1 ENSMUST00000117529 ENSMUSP00000112824 TRANSLATION protein_coding - CCDS17256.1 1 328.0 0.0 0.0 7.1 270.3 0.0 -2,-2 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000027601 Mtfr1 ENSMUST00000029129 ENSMUSP00000029129 TRANSLATION nonsense_mediated_decay - - 1 55.0 0.0 0.0 0.0 58.8 0.0 -2,-1 0.0 1 -2.0 MINOR ENSMUSG00000061143 Maml3 ENSMUST00000121440 ENSMUSP00000112637 TRANSLATION protein_coding - CCDS17342.2 1 1135.0 0.0 0.6 0.0 80.4 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000061143 Maml3 ENSMUST00000118075 ENSMUSP00000113677 TRANSLATION protein_coding - - 1 489.0 0.0 0.0 0.0 0.0 0.0 2,-1 0.0044 1 0.0 MINOR ENSMUSG00000061143 Maml3 ENSMUST00000193568 - NO_TRANSLATION retained_intron ENSMUSG00000027828 Ssr3 ENSMUST00000119896 ENSMUSP00000113831 TRANSLATION protein_coding - - 1 179.0 0.0 3.25 0.0 253.2 3.0 -4,-7 0.0113 1 9.69 MINOR ENSMUSG00000027828 Ssr3 ENSMUST00000139785 - NO_TRANSLATION retained_intron ENSMUSG00000027828 Ssr3 ENSMUST00000029414 ENSMUSP00000029414 TRANSLATION protein_coding - CCDS17386.1 1 185.0 0.0 3.6 30.3 280.0 4.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027774 Gfm1 ENSMUST00000161009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027774 Gfm1 ENSMUST00000160529 - NO_TRANSLATION retained_intron ENSMUSG00000027774 Gfm1 ENSMUST00000077271 ENSMUSP00000076503 TRANSLATION protein_coding - CCDS38449.1 1 751.0 18.0 12.415 16.6 576.6 0.0 -4,0 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000002227 Mov10 ENSMUST00000136148 ENSMUSP00000120486 TRANSLATION nonsense_mediated_decay - - 3 145.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000002227 Mov10 ENSMUST00000196211 - NO_TRANSLATION retained_intron ENSMUSG00000002227 Mov10 ENSMUST00000168015 ENSMUSP00000128246 TRANSLATION protein_coding - CCDS38579.1 1 1004.0 16.0 3.296 8.7 242.3 0.0 -4,-7 1.0 27 15.0 PRINCIPAL:4 ENSMUSG00000002227 Mov10 ENSMUST00000166979 ENSMUSP00000126897 TRANSLATION protein_coding - CCDS51033.1 1 1077.0 16.0 3.296 0.0 242.3 0.0 -4,-2 0.3477 27 12.0 MINOR ENSMUSG00000002227 Mov10 ENSMUST00000145414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002227 Mov10 ENSMUST00000106775 ENSMUSP00000102387 TRANSLATION protein_coding - - 5 1077.0 16.0 3.296 0.0 242.3 0.0 -4,-2 0.2096 27 12.0 MINOR ENSMUSG00000002227 Mov10 ENSMUST00000106774 ENSMUSP00000102386 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000002227 Mov10 ENSMUST00000002297 ENSMUSP00000002297 TRANSLATION protein_coding - - 5 1004.0 16.0 3.296 8.7 242.3 0.0 -4,-7 0.8544 27 15.0 ALTERNATIVE:1 ENSMUSG00000002227 Mov10 ENSMUST00000196161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059857 Ntng1 ENSMUST00000191116 - NO_TRANSLATION retained_intron ENSMUSG00000059857 Ntng1 ENSMUST00000138344 ENSMUSP00000120688 TRANSLATION protein_coding - CCDS59652.1 1 483.0 6.0 4.13 5.6 247.7 0.0 1,-3 0.5283 9 14.388 MINOR ENSMUSG00000059857 Ntng1 ENSMUST00000128219 ENSMUSP00000116579 TRANSLATION nonsense_mediated_decay - - 1 304.0 6.0 2.0 0.0 188.4 0.0 1,-3 0.0018 7 -2.0 MINOR ENSMUSG00000059857 Ntng1 ENSMUST00000189335 - NO_TRANSLATION retained_intron ENSMUSG00000059857 Ntng1 ENSMUST00000138953 ENSMUSP00000116213 TRANSLATION protein_coding - CCDS59654.1 1 480.0 6.0 3.3725 6.9 218.1 0.0 1,-3 0.4414 10 13.03 MINOR ENSMUSG00000059857 Ntng1 ENSMUST00000072596 ENSMUSP00000072397 TRANSLATION protein_coding - CCDS38604.1 1 539.0 6.0 4.43 6.9 275.9 0.0 1,-3 1.0 10 16.0 PRINCIPAL:4 ENSMUSG00000059857 Ntng1 ENSMUST00000156177 ENSMUSP00000119534 TRANSLATION protein_coding - CCDS59653.1 1 460.0 6.0 3.56 5.7 218.1 0.0 1,-3 0.4592 10 12.996 MINOR ENSMUSG00000059857 Ntng1 ENSMUST00000106571 ENSMUSP00000102181 TRANSLATION protein_coding - - 5 481.0 6.0 3.0425 6.9 218.1 0.0 1,-3 0.4041 9 12.37 MINOR ENSMUSG00000059857 Ntng1 ENSMUST00000131027 ENSMUSP00000118800 TRANSLATION protein_coding - - 1 494.0 6.0 3.83 2.2 246.3 0.0 1,-3 0.0979 10 12.92 MINOR ENSMUSG00000059857 Ntng1 ENSMUST00000051253 ENSMUSP00000052268 TRANSLATION protein_coding start - - 108.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000059857 Ntng1 ENSMUST00000106575 ENSMUSP00000102185 TRANSLATION protein_coding - - 5 539.0 6.0 4.1 6.9 275.9 0.0 1,-3 0.8037 10 15.34 ALTERNATIVE:1 ENSMUSG00000059857 Ntng1 ENSMUST00000133268 ENSMUSP00000117371 TRANSLATION protein_coding - CCDS59651.1 1 438.0 6.0 3.53 6.9 218.1 0.0 1,-3 0.4691 9 13.342 MINOR ENSMUSG00000027713 1810062G17Rik ENSMUST00000029268 ENSMUSP00000029268 TRANSLATION protein_coding - CCDS57208.1 1 129.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.8435 - 0.0 PRINCIPAL:1 ENSMUSG00000048455 Sprr1b ENSMUST00000062160 ENSMUSP00000058617 TRANSLATION protein_coding - CCDS17557.1 1 153.0 0.0 0.0 0.4 207.3 0.0 -4,-6 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000028106 Rprd2 ENSMUST00000200428 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028106 Rprd2 ENSMUST00000198740 - NO_TRANSLATION retained_intron ENSMUSG00000028106 Rprd2 ENSMUST00000200164 ENSMUSP00000143333 TRANSLATION protein_coding start - 1 1386.0 0.0 3.0 0.0 97.7 0.0 -4,-5 0.3776 26 -2.0 MINOR ENSMUSG00000028106 Rprd2 ENSMUST00000197449 ENSMUSP00000143240 TRANSLATION protein_coding - - 1 473.0 0.0 4.0 0.0 97.7 0.0 -4,-1 0.7805 8 8.0 ALTERNATIVE:2 ENSMUSG00000028106 Rprd2 ENSMUST00000090791 ENSMUSP00000088297 TRANSLATION protein_coding - CCDS38549.1 1 1469.0 0.0 4.0 0.0 97.7 0.0 -4,-1 0.9013 28 8.0 PRINCIPAL:3 ENSMUSG00000028106 Rprd2 ENSMUST00000198741 - NO_TRANSLATION retained_intron ENSMUSG00000070368 Prok1 ENSMUST00000049852 ENSMUSP00000060617 TRANSLATION protein_coding - CCDS38589.1 1 105.0 0.0 2.75 19.6 156.2 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000070368 Prok1 ENSMUST00000198732 - NO_TRANSLATION retained_intron ENSMUSG00000070368 Prok1 ENSMUST00000197758 ENSMUSP00000143197 TRANSLATION protein_coding - - 1 89.0 0.0 2.165 0.0 131.3 0.0 -4,-6 0.0 - 9.228 MINOR ENSMUSG00000028172 Tacr3 ENSMUST00000029822 ENSMUSP00000029822 TRANSLATION protein_coding - CCDS17852.1 1 452.0 0.0 4.1 0.4 193.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040037 Negr1 ENSMUST00000106065 ENSMUSP00000101680 TRANSLATION protein_coding - - 1 329.0 0.0 7.18 0.0 132.2 0.0 1,-2 0.0751 10 11.1 MINOR ENSMUSG00000040037 Negr1 ENSMUST00000197246 - NO_TRANSLATION retained_intron ENSMUSG00000040037 Negr1 ENSMUST00000074015 ENSMUSP00000073664 TRANSLATION protein_coding - CCDS17930.1 1 348.0 0.0 7.38 20.9 132.2 0.0 1,-2 1.0 10 15.502 PRINCIPAL:1 ENSMUSG00000040037 Negr1 ENSMUST00000041425 ENSMUSP00000041132 TRANSLATION protein_coding - CCDS17931.1 1 329.0 0.0 7.63 0.1 132.2 0.0 1,-2 0.3068 10 12.0 MINOR ENSMUSG00000040037 Negr1 ENSMUST00000175773 ENSMUSP00000135531 TRANSLATION protein_coding stop - 3 122.0 0.0 2.35 0.0 30.8 0.0 1,-2 0.0012 1 -2.0 MINOR ENSMUSG00000032854 Ugt8a ENSMUST00000057944 ENSMUSP00000050852 TRANSLATION protein_coding - CCDS17821.1 1 541.0 17.0 4.75 22.0 396.4 1.0 1,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000032854 Ugt8a ENSMUST00000196481 - NO_TRANSLATION retained_intron ENSMUSG00000032854 Ugt8a ENSMUST00000198610 ENSMUSP00000143605 TRANSLATION protein_coding - CCDS17821.1 1 541.0 17.0 4.75 22.0 396.4 1.0 1,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000027876 Reg4 ENSMUST00000029469 ENSMUSP00000029469 TRANSLATION protein_coding - CCDS17661.1 1 157.0 3.0 4.2 8.0 73.9 0.0 3,-1 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000042157 Sprr2i ENSMUST00000047264 ENSMUSP00000043513 TRANSLATION protein_coding - CCDS38511.1 1 76.0 0.0 0.0 0.0 73.3 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000118505 Etv3l ENSMUST00000238853 ENSMUSP00000159067 TRANSLATION protein_coding - - - 356.0 0.0 1.8 3.9 114.1 0.0 -4,-6 0.8978 - 13.0 PRINCIPAL:1 ENSMUSG00000118505 Etv3l ENSMUST00000238894 ENSMUSP00000158927 TRANSLATION protein_coding - - - 356.0 0.0 1.8 3.9 114.1 0.0 -4,-6 0.8978 - 13.0 PRINCIPAL:1 ENSMUSG00000039221 Rpl22l1 ENSMUST00000195827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039221 Rpl22l1 ENSMUST00000194649 ENSMUSP00000141510 TRANSLATION protein_coding - CCDS84615.1 1 121.0 0.0 3.33 22.6 164.7 0.0 -4,-5 0.9732 2 11.224 ALTERNATIVE:1 ENSMUSG00000039221 Rpl22l1 ENSMUST00000194092 - NO_TRANSLATION retained_intron ENSMUSG00000039221 Rpl22l1 ENSMUST00000193168 ENSMUSP00000141360 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 1.165 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039221 Rpl22l1 ENSMUST00000043867 ENSMUSP00000043111 TRANSLATION protein_coding - CCDS17278.1 1 122.0 0.0 3.33 27.8 164.7 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000039221 Rpl22l1 ENSMUST00000191691 - NO_TRANSLATION retained_intron ENSMUSG00000039221 Rpl22l1 ENSMUST00000195519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039221 Rpl22l1 ENSMUST00000191667 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039221 Rpl22l1 ENSMUST00000195728 - NO_TRANSLATION retained_intron ENSMUSG00000028047 Thbs3 ENSMUST00000144980 - NO_TRANSLATION retained_intron ENSMUSG00000028047 Thbs3 ENSMUST00000126315 - NO_TRANSLATION retained_intron ENSMUSG00000028047 Thbs3 ENSMUST00000126372 - NO_TRANSLATION retained_intron ENSMUSG00000028047 Thbs3 ENSMUST00000142051 ENSMUSP00000116136 TRANSLATION protein_coding stop - 3 131.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 4 -2.0 MINOR ENSMUSG00000028047 Thbs3 ENSMUST00000136881 ENSMUSP00000120337 TRANSLATION nonsense_mediated_decay start - 3 104.0 13.0 1.1 0.0 40.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028047 Thbs3 ENSMUST00000126700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028047 Thbs3 ENSMUST00000146435 - NO_TRANSLATION retained_intron ENSMUSG00000028047 Thbs3 ENSMUST00000155924 - NO_TRANSLATION retained_intron ENSMUSG00000028047 Thbs3 ENSMUST00000153129 - NO_TRANSLATION retained_intron ENSMUSG00000028047 Thbs3 ENSMUST00000119084 ENSMUSP00000112912 TRANSLATION protein_coding - - 5 919.0 119.0 13.58 0.0 675.6 0.0 3,-2 0.1711 9 13.062 MINOR ENSMUSG00000028047 Thbs3 ENSMUST00000029682 ENSMUSP00000029682 TRANSLATION protein_coding - CCDS17495.1 1 956.0 124.0 14.38 8.3 675.6 0.0 3,-2 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000061175 Fnip2 ENSMUST00000130613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061175 Fnip2 ENSMUST00000149475 - NO_TRANSLATION retained_intron ENSMUSG00000061175 Fnip2 ENSMUST00000076136 ENSMUSP00000075497 TRANSLATION protein_coding - CCDS50934.1 5 1108.0 0.0 2.65 0.1 636.4 0.0 -4,-2 0.8976 1 8.0 ALTERNATIVE:2 ENSMUSG00000061175 Fnip2 ENSMUST00000154645 - NO_TRANSLATION retained_intron ENSMUSG00000061175 Fnip2 ENSMUST00000139171 - NO_TRANSLATION retained_intron ENSMUSG00000061175 Fnip2 ENSMUST00000133154 ENSMUSP00000115275 TRANSLATION protein_coding - - 5 1138.0 0.0 2.65 0.1 636.4 0.0 -4,-2 1.0 1 8.0 PRINCIPAL:4 ENSMUSG00000061175 Fnip2 ENSMUST00000239298 ENSMUSP00000159232 TRANSLATION protein_coding stop - - 677.0 0.0 2.65 0.0 399.5 0.0 -4,-5 0.0639 - -2.0 MINOR ENSMUSG00000001020 S100a4 ENSMUST00000001046 ENSMUSP00000001046 TRANSLATION protein_coding - CCDS17538.1 1 101.0 13.0 2.75 16.0 72.5 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000001020 S100a4 ENSMUST00000142476 ENSMUSP00000143522 TRANSLATION protein_coding stop - 1 78.0 13.0 2.0 0.0 72.5 0.0 -4,-5 0.0056 2 -2.0 MINOR ENSMUSG00000048332 Lhfpl6 ENSMUST00000137954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048332 Lhfpl6 ENSMUST00000147139 ENSMUSP00000119019 TRANSLATION protein_coding - CCDS17344.1 5 200.0 0.0 3.0 32.9 200.6 2.0 2,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000048332 Lhfpl6 ENSMUST00000059562 ENSMUSP00000056364 TRANSLATION protein_coding - CCDS17344.1 1 200.0 0.0 3.0 32.9 200.6 2.0 2,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000048332 Lhfpl6 ENSMUST00000196913 - NO_TRANSLATION retained_intron ENSMUSG00000051278 Zgrf1 ENSMUST00000199888 ENSMUSP00000142693 TRANSLATION nonsense_mediated_decay - - 1 785.0 0.0 0.0 0.0 71.9 0.0 -4,-5 0.0094 - -2.0 MINOR ENSMUSG00000051278 Zgrf1 ENSMUST00000196341 ENSMUSP00000143570 TRANSLATION nonsense_mediated_decay start - 5 662.0 8.0 1.2 0.0 83.3 0.0 -4,-5 0.0022 1 -2.0 MINOR ENSMUSG00000051278 Zgrf1 ENSMUST00000043108 ENSMUSP00000044432 TRANSLATION protein_coding - CCDS51066.1 5 1863.0 11.0 6.6 0.0 389.5 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000051278 Zgrf1 ENSMUST00000195955 ENSMUSP00000142886 TRANSLATION protein_coding - - 2 856.0 0.0 0.0 0.0 71.9 0.0 -4,-5 0.0101 5 0.0 MINOR ENSMUSG00000051278 Zgrf1 ENSMUST00000197108 - NO_TRANSLATION retained_intron ENSMUSG00000051278 Zgrf1 ENSMUST00000200490 ENSMUSP00000143585 TRANSLATION nonsense_mediated_decay - - 1 785.0 0.0 0.0 0.0 71.9 0.0 -4,-5 0.0094 5 -2.0 MINOR ENSMUSG00000051278 Zgrf1 ENSMUST00000196141 ENSMUSP00000143761 TRANSLATION protein_coding - CCDS51066.1 5 1863.0 11.0 6.6 0.0 389.5 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000042520 Ubap2l ENSMUST00000197633 - NO_TRANSLATION retained_intron ENSMUSG00000042520 Ubap2l ENSMUST00000197177 ENSMUSP00000143246 TRANSLATION protein_coding start - 1 497.0 0.0 0.0 0.0 56.3 0.0 -4,-5 0.0053 5 -2.0 MINOR ENSMUSG00000042520 Ubap2l ENSMUST00000198322 ENSMUSP00000142524 TRANSLATION protein_coding - CCDS79958.1 1 1067.0 0.0 3.3 6.6 80.5 0.0 -4,-7 0.86 18 9.778 ALTERNATIVE:1 ENSMUSG00000042520 Ubap2l ENSMUST00000196843 ENSMUSP00000143459 TRANSLATION protein_coding - CCDS79960.1 5 1107.0 0.0 3.3 7.1 80.5 0.0 -4,-7 0.8634 21 9.936 PRINCIPAL:4 ENSMUSG00000042520 Ubap2l ENSMUST00000199834 ENSMUSP00000143254 TRANSLATION protein_coding - CCDS50965.1 1 1014.0 0.0 3.3 5.6 80.5 0.0 -4,-7 0.9031 20 9.46 ALTERNATIVE:1 ENSMUSG00000042520 Ubap2l ENSMUST00000195995 ENSMUSP00000143638 TRANSLATION protein_coding - CCDS50965.1 1 1014.0 0.0 3.3 5.6 80.5 0.0 -4,-7 0.9031 20 9.46 ALTERNATIVE:1 ENSMUSG00000042520 Ubap2l ENSMUST00000029553 ENSMUSP00000029553 TRANSLATION protein_coding - CCDS38498.1 1 1105.0 0.0 3.3 4.8 80.5 0.0 -4,-7 0.771 20 9.206 ALTERNATIVE:1 ENSMUSG00000042520 Ubap2l ENSMUST00000199050 ENSMUSP00000142719 TRANSLATION protein_coding start - 3 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042520 Ubap2l ENSMUST00000196917 ENSMUSP00000142602 TRANSLATION protein_coding stop - 3 50.0 0.0 1.55 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000042520 Ubap2l ENSMUST00000197903 ENSMUSP00000143519 TRANSLATION protein_coding stop - 3 81.0 0.0 2.3 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000042520 Ubap2l ENSMUST00000198282 - NO_TRANSLATION retained_intron ENSMUSG00000042520 Ubap2l ENSMUST00000196633 ENSMUSP00000143423 TRANSLATION protein_coding stop - 3 105.0 0.0 3.3 0.0 24.2 0.0 -4,-7 0.0308 6 -2.0 MINOR ENSMUSG00000042520 Ubap2l ENSMUST00000196952 - NO_TRANSLATION retained_intron ENSMUSG00000042520 Ubap2l ENSMUST00000199929 ENSMUSP00000142488 TRANSLATION protein_coding stop - 2 57.0 0.0 1.55 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000042520 Ubap2l ENSMUST00000200195 - NO_TRANSLATION retained_intron ENSMUSG00000042520 Ubap2l ENSMUST00000199016 - NO_TRANSLATION retained_intron ENSMUSG00000042520 Ubap2l ENSMUST00000199612 - NO_TRANSLATION retained_intron ENSMUSG00000042520 Ubap2l ENSMUST00000090908 ENSMUSP00000088424 TRANSLATION protein_coding - CCDS79959.1 1 983.0 0.0 3.3 7.3 80.5 0.0 -4,-7 1.0 18 10.0 ALTERNATIVE:1 ENSMUSG00000042520 Ubap2l ENSMUST00000064639 ENSMUSP00000066138 TRANSLATION protein_coding - CCDS50966.1 1 1112.0 0.0 3.3 5.6 80.5 0.0 -4,-7 0.8174 21 9.46 ALTERNATIVE:1 ENSMUSG00000042520 Ubap2l ENSMUST00000200301 - NO_TRANSLATION retained_intron ENSMUSG00000042520 Ubap2l ENSMUST00000196747 - NO_TRANSLATION retained_intron ENSMUSG00000042520 Ubap2l ENSMUST00000196568 - NO_TRANSLATION retained_intron ENSMUSG00000042520 Ubap2l ENSMUST00000199301 - NO_TRANSLATION retained_intron ENSMUSG00000041842 Fhdc1 ENSMUST00000091002 ENSMUSP00000088525 TRANSLATION protein_coding - CCDS17438.1 1 1149.0 0.0 8.0 0.4 311.7 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000041842 Fhdc1 ENSMUST00000131065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041842 Fhdc1 ENSMUST00000194027 ENSMUSP00000142030 TRANSLATION protein_coding - - 5 208.0 0.0 1.75 0.0 79.4 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000041842 Fhdc1 ENSMUST00000107689 ENSMUSP00000103317 TRANSLATION protein_coding - CCDS17438.1 1 1149.0 0.0 8.0 0.4 311.7 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000041842 Fhdc1 ENSMUST00000125643 - NO_TRANSLATION retained_intron ENSMUSG00000028124 Gclm ENSMUST00000137540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028124 Gclm ENSMUST00000199699 ENSMUSP00000142381 TRANSLATION protein_coding start/stop - 5 98.0 0.0 0.15 0.0 0.0 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000028124 Gclm ENSMUST00000176761 - NO_TRANSLATION retained_intron ENSMUSG00000028124 Gclm ENSMUST00000149983 ENSMUSP00000123683 TRANSLATION protein_coding start - 5 153.0 0.0 0.91 0.0 21.4 0.0 -4,-5 0.0001 3 -2.0 MINOR ENSMUSG00000028124 Gclm ENSMUST00000176445 ENSMUSP00000134906 TRANSLATION protein_coding start - 2 199.0 0.0 1.41 0.0 25.9 0.0 -4,-5 0.0351 7 -2.0 MINOR ENSMUSG00000028124 Gclm ENSMUST00000029769 ENSMUSP00000029769 TRANSLATION protein_coding - CCDS17808.1 1 274.0 0.0 1.41 24.5 25.9 0.0 -4,-1 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000042572 Ube2q1 ENSMUST00000199427 - NO_TRANSLATION retained_intron ENSMUSG00000042572 Ube2q1 ENSMUST00000038356 ENSMUSP00000037939 TRANSLATION protein_coding - CCDS17517.1 1 422.0 0.0 5.83 7.1 38.2 0.0 -4,-5 1.0 3 13.772 PRINCIPAL:1 ENSMUSG00000042572 Ube2q1 ENSMUST00000196726 ENSMUSP00000143422 TRANSLATION protein_coding - - 1 253.0 0.0 5.83 2.7 39.7 0.0 -4,-5 0.261 2 12.558 MINOR ENSMUSG00000074435 Smcp ENSMUST00000194965 ENSMUSP00000142023 TRANSLATION protein_coding - - 3 143.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5812 1 0.0 PRINCIPAL:1 ENSMUSG00000074435 Smcp ENSMUST00000098888 ENSMUSP00000096487 TRANSLATION protein_coding - - 1 143.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5812 1 0.0 PRINCIPAL:1 ENSMUSG00000027508 Pag1 ENSMUST00000159825 - NO_TRANSLATION retained_intron ENSMUSG00000027508 Pag1 ENSMUST00000159497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027508 Pag1 ENSMUST00000108384 ENSMUSP00000104021 TRANSLATION protein_coding - CCDS17235.1 1 429.0 0.0 1.55 2.2 680.8 1.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000027508 Pag1 ENSMUST00000161949 ENSMUSP00000124529 TRANSLATION protein_coding - CCDS17235.1 1 429.0 0.0 1.55 2.2 680.8 1.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000027508 Pag1 ENSMUST00000163022 - NO_TRANSLATION retained_intron ENSMUSG00000043461 Sptssb ENSMUST00000051239 ENSMUSP00000062794 TRANSLATION protein_coding - CCDS38453.1 1 76.0 0.0 1.0 14.5 55.4 1.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000043461 Sptssb ENSMUST00000171529 ENSMUSP00000131241 TRANSLATION protein_coding - CCDS38453.1 1 76.0 0.0 1.0 14.5 55.4 1.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027985 Lef1 ENSMUST00000136147 - NO_TRANSLATION retained_intron ENSMUSG00000027985 Lef1 ENSMUST00000198624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027985 Lef1 ENSMUST00000132737 - NO_TRANSLATION retained_intron ENSMUSG00000027985 Lef1 ENSMUST00000106341 ENSMUSP00000101948 TRANSLATION protein_coding - CCDS71319.1 1 384.0 0.0 3.3 23.1 362.2 0.0 -4,-5 1.0 1 11.26 ALTERNATIVE:1 ENSMUSG00000027985 Lef1 ENSMUST00000029611 ENSMUSP00000029611 TRANSLATION protein_coding - CCDS17842.1 1 397.0 0.0 3.3 17.7 362.2 0.0 -4,-5 0.9386 3 10.464 MINOR ENSMUSG00000027985 Lef1 ENSMUST00000098611 ENSMUSP00000096211 TRANSLATION protein_coding - CCDS71320.1 1 331.0 0.0 2.5 8.2 252.7 0.0 -4,-6 0.2653 3 6.662 MINOR ENSMUSG00000027985 Lef1 ENSMUST00000066849 ENSMUSP00000067808 TRANSLATION protein_coding - - 5 369.0 0.0 3.3 28.1 362.2 0.0 -4,-5 0.9116 2 12.0 PRINCIPAL:3 ENSMUSG00000027985 Lef1 ENSMUST00000200166 - NO_TRANSLATION retained_intron ENSMUSG00000103084 Gm38119 ENSMUST00000192027 ENSMUSP00000141812 TRANSLATION protein_coding - - 5 146.0 0.0 0.0 0.0 28.1 0.0 -4,-6 0.6908 - 6.0 PRINCIPAL:1 ENSMUSG00000027827 Kcnab1 ENSMUST00000161404 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027827 Kcnab1 ENSMUST00000161956 - NO_TRANSLATION retained_intron ENSMUSG00000027827 Kcnab1 ENSMUST00000161979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027827 Kcnab1 ENSMUST00000239069 ENSMUSP00000158882 TRANSLATION protein_coding - - - 408.0 31.0 9.25 15.8 238.7 0.0 -4,-6 0.732 8 19.534 MINOR ENSMUSG00000027827 Kcnab1 ENSMUST00000049230 ENSMUSP00000047480 TRANSLATION protein_coding - CCDS38447.1 1 401.0 31.0 9.25 31.6 238.7 0.0 -4,-5 1.0 9 21.598 PRINCIPAL:1 ENSMUSG00000027827 Kcnab1 ENSMUST00000160136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027827 Kcnab1 ENSMUST00000238901 ENSMUSP00000159000 TRANSLATION protein_coding - - - 419.0 31.0 9.45 13.6 238.7 0.0 -4,-5 0.6553 8 19.648 MINOR ENSMUSG00000027827 Kcnab1 ENSMUST00000193778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027827 Kcnab1 ENSMUST00000159525 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033883 Zfp267 ENSMUST00000197653 ENSMUSP00000142829 TRANSLATION protein_coding - CCDS79898.1 1 796.0 59.0 1.1 0.4 394.8 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000033883 Zfp267 ENSMUST00000165956 ENSMUSP00000131779 TRANSLATION protein_coding start - 3 795.0 59.0 1.1 0.4 394.8 0.0 -4,-5 0.6604 3 -2.0 MINOR ENSMUSG00000033883 Zfp267 ENSMUST00000205077 ENSMUSP00000145477 TRANSLATION protein_coding stop - 3 25.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000069072 Slc7a14 ENSMUST00000091259 ENSMUSP00000088803 TRANSLATION protein_coding - CCDS17291.1 1 771.0 0.0 3.3 25.8 204.3 15.0 -4,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000069072 Slc7a14 ENSMUST00000108245 ENSMUSP00000103880 TRANSLATION protein_coding - - 1 677.0 0.0 3.3 0.0 185.8 14.0 -4,0 0.0362 5 10.89 MINOR ENSMUSG00000027564 Cypt12 ENSMUST00000249076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027564 Cypt12 ENSMUST00000029080 ENSMUSP00000029080 TRANSLATION protein_coding - CCDS50870.1 - 119.0 0.0 1.0 0.0 0.0 0.0 -4,-2 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000042672 Dcst1 ENSMUST00000127766 - NO_TRANSLATION retained_intron ENSMUSG00000042672 Dcst1 ENSMUST00000139467 - NO_TRANSLATION retained_intron ENSMUSG00000042672 Dcst1 ENSMUST00000200174 - NO_TRANSLATION retained_intron ENSMUSG00000042672 Dcst1 ENSMUST00000124766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042672 Dcst1 ENSMUST00000070820 ENSMUSP00000065502 TRANSLATION protein_coding - CCDS38490.1 1 732.0 7.0 0.0 0.1 176.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042672 Dcst1 ENSMUST00000128002 - NO_TRANSLATION retained_intron ENSMUSG00000027880 Slc25a54 ENSMUST00000029478 ENSMUSP00000029478 TRANSLATION protein_coding - CCDS51052.1 1 473.0 16.0 6.73 19.7 259.0 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000027880 Slc25a54 ENSMUST00000159926 ENSMUSP00000124484 TRANSLATION nonsense_mediated_decay - - 1 64.0 5.0 0.6 0.0 24.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002233 Rhoc ENSMUST00000196817 ENSMUSP00000142697 TRANSLATION protein_coding - CCDS17704.1 3 193.0 23.0 5.25 36.9 194.8 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000002233 Rhoc ENSMUST00000176347 ENSMUSP00000135659 TRANSLATION protein_coding - - 5 149.0 20.0 3.55 0.0 160.6 0.0 -4,-5 0.0 - 10.548 MINOR ENSMUSG00000002233 Rhoc ENSMUST00000132721 - NO_TRANSLATION retained_intron ENSMUSG00000002233 Rhoc ENSMUST00000106787 ENSMUSP00000102399 TRANSLATION protein_coding - CCDS17704.1 2 193.0 23.0 5.25 36.9 194.8 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000002233 Rhoc ENSMUST00000199824 ENSMUSP00000142855 TRANSLATION protein_coding stop - 5 118.0 18.0 2.75 0.0 148.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002233 Rhoc ENSMUST00000002303 ENSMUSP00000002303 TRANSLATION protein_coding - CCDS17704.1 1 193.0 23.0 5.25 36.9 194.8 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000027708 Dcun1d1 ENSMUST00000199173 ENSMUSP00000142443 TRANSLATION protein_coding stop - 3 114.0 0.0 2.83 0.0 28.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027708 Dcun1d1 ENSMUST00000178098 ENSMUSP00000137324 TRANSLATION protein_coding - CCDS17306.1 5 244.0 1.0 6.66 33.5 156.4 0.0 -4,-5 0.8656 - 14.176 MINOR ENSMUSG00000027708 Dcun1d1 ENSMUST00000196174 - NO_TRANSLATION retained_intron ENSMUSG00000027708 Dcun1d1 ENSMUST00000200661 ENSMUSP00000143716 TRANSLATION protein_coding stop - 3 220.0 1.0 5.91 0.0 126.2 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000027708 Dcun1d1 ENSMUST00000196263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027708 Dcun1d1 ENSMUST00000197546 ENSMUSP00000142421 TRANSLATION nonsense_mediated_decay start - 3 142.0 0.0 3.4125 0.0 41.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000027708 Dcun1d1 ENSMUST00000197489 ENSMUSP00000142690 TRANSLATION nonsense_mediated_decay - - 5 93.0 0.0 2.0 0.0 41.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000027708 Dcun1d1 ENSMUST00000196270 ENSMUSP00000142384 TRANSLATION protein_coding stop - 2 115.0 0.0 2.83 0.0 28.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027708 Dcun1d1 ENSMUST00000148465 ENSMUSP00000115420 TRANSLATION protein_coding stop - 2 214.0 1.0 5.91 0.0 115.5 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000027708 Dcun1d1 ENSMUST00000198389 ENSMUSP00000143243 TRANSLATION protein_coding - CCDS17306.1 1 244.0 1.0 6.66 33.5 156.4 0.0 -4,-5 0.8656 - 14.176 MINOR ENSMUSG00000027708 Dcun1d1 ENSMUST00000196115 - NO_TRANSLATION retained_intron ENSMUSG00000027708 Dcun1d1 ENSMUST00000196261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027708 Dcun1d1 ENSMUST00000198362 ENSMUSP00000143252 TRANSLATION protein_coding stop - 3 20.0 1.0 0.66 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000027708 Dcun1d1 ENSMUST00000108182 ENSMUSP00000103817 TRANSLATION protein_coding - CCDS57207.1 1 259.0 1.0 7.16 31.9 170.1 0.0 -4,-7 1.0 1 15.804 PRINCIPAL:1 ENSMUSG00000049133 Flg2 ENSMUST00000194707 ENSMUSP00000160002 TRANSLATION protein_coding - - 5 6708.0 5.0 1.0 0.0 51.8 0.0 -,- 1.0 12 17.0 PRINCIPAL:1 ENSMUSG00000027875 Hmgcs2 ENSMUST00000120541 ENSMUSP00000113296 TRANSLATION protein_coding - CCDS17662.1 1 508.0 29.0 8.0 14.7 786.2 0.0 -4,0 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000027875 Hmgcs2 ENSMUST00000090746 ENSMUSP00000088249 TRANSLATION protein_coding - CCDS17662.1 1 508.0 29.0 8.0 14.7 786.2 0.0 -4,0 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000091572 Vmn2r3 ENSMUST00000170244 ENSMUSP00000126165 TRANSLATION protein_coding - CCDS50920.1 5 887.0 4.0 3.34 0.0 467.5 8.0 -4,-7 0.2836 - 14.89 MINOR ENSMUSG00000091572 Vmn2r3 ENSMUST00000176328 ENSMUSP00000134891 TRANSLATION protein_coding - - 5 909.0 4.0 3.67 0.1 475.0 8.0 2,-2 0.9416 - 16.0 PRINCIPAL:1 ENSMUSG00000091572 Vmn2r3 ENSMUST00000233938 ENSMUSP00000156667 TRANSLATION nonsense_mediated_decay - - - 470.0 0.0 2.05 0.0 221.9 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000091572 Vmn2r3 ENSMUST00000233531 ENSMUSP00000156505 TRANSLATION protein_coding - - - 623.0 4.0 3.19 0.0 275.1 8.0 2,-2 0.0122 - 9.04 MINOR ENSMUSG00000091572 Vmn2r3 ENSMUST00000233015 ENSMUSP00000156953 TRANSLATION nonsense_mediated_decay - - - 180.0 0.0 1.57 0.0 46.3 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000091572 Vmn2r3 ENSMUST00000233241 - NO_TRANSLATION retained_intron ENSMUSG00000091572 Vmn2r3 ENSMUST00000232849 ENSMUSP00000156591 TRANSLATION nonsense_mediated_decay - - - 572.0 0.0 2.55 0.0 244.2 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000091572 Vmn2r3 ENSMUST00000233608 - NO_TRANSLATION retained_intron ENSMUSG00000091572 Vmn2r3 ENSMUST00000233952 ENSMUSP00000156429 TRANSLATION nonsense_mediated_decay - - - 470.0 0.0 2.116 0.0 221.9 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000036745 Ttll7 ENSMUST00000197547 - NO_TRANSLATION retained_intron ENSMUSG00000036745 Ttll7 ENSMUST00000106134 ENSMUSP00000101740 TRANSLATION protein_coding - - 5 887.0 6.0 6.88 10.3 259.1 0.0 -4,-5 1.0 7 17.0 PRINCIPAL:4 ENSMUSG00000036745 Ttll7 ENSMUST00000124743 ENSMUSP00000143151 TRANSLATION protein_coding start - 1 47.0 1.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036745 Ttll7 ENSMUST00000170055 ENSMUSP00000129369 TRANSLATION protein_coding - - 5 892.0 6.0 6.88 9.2 259.1 0.0 -4,-5 0.9437 7 16.646 ALTERNATIVE:1 ENSMUSG00000036745 Ttll7 ENSMUST00000037942 ENSMUSP00000043753 TRANSLATION protein_coding - CCDS51094.2 5 912.0 6.0 6.88 0.0 259.1 0.0 -4,-5 0.322 6 14.0 MINOR ENSMUSG00000036745 Ttll7 ENSMUST00000038090 - NO_TRANSLATION retained_intron ENSMUSG00000032826 Ank2 ENSMUST00000182064 ENSMUSP00000138620 TRANSLATION protein_coding - - 5 3926.0 0.0 34.07 0.0 676.8 0.0 -4,-5 1.0 108 12.0 PRINCIPAL:1 ENSMUSG00000032826 Ank2 ENSMUST00000239234 ENSMUSP00000159256 TRANSLATION protein_coding stop - - 53.0 0.0 1.05 0.0 0.0 0.0 -4,-6 0.0125 1 -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182452 ENSMUSP00000138373 TRANSLATION protein_coding stop - 5 124.0 0.0 3.05 0.0 64.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000238781 ENSMUSP00000158721 TRANSLATION protein_coding stop - - 112.0 0.0 2.066 0.0 30.0 0.0 -3,-6 0.0 3 -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182212 - NO_TRANSLATION retained_intron ENSMUSG00000032826 Ank2 ENSMUST00000182062 ENSMUSP00000138279 TRANSLATION protein_coding start/stop - 3 187.0 0.0 3.22 0.0 47.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182959 ENSMUSP00000138251 TRANSLATION protein_coding stop - 5 1114.0 0.0 24.21 0.0 596.1 0.0 -4,-7 0.1135 34 -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182050 - NO_TRANSLATION retained_intron ENSMUSG00000032826 Ank2 ENSMUST00000182078 ENSMUSP00000138753 TRANSLATION protein_coding - CCDS84672.1 5 3900.0 0.0 32.77 0.0 637.3 0.0 -4,-7 0.6434 106 7.032 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182571 ENSMUSP00000138747 TRANSLATION protein_coding start - 5 421.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0034 6 -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182588 - NO_TRANSLATION retained_intron ENSMUSG00000032826 Ank2 ENSMUST00000182008 ENSMUSP00000138730 TRANSLATION protein_coding - - 1 481.0 0.0 11.05 0.0 254.4 0.0 -4,-5 0.0003 15 0.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182994 ENSMUSP00000138089 TRANSLATION protein_coding - - 1 454.0 0.0 9.08 0.0 251.9 0.0 -4,-5 0.001 11 0.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182271 - NO_TRANSLATION retained_intron ENSMUSG00000032826 Ank2 ENSMUST00000189368 ENSMUSP00000140700 TRANSLATION protein_coding start/stop - - 113.0 0.0 0.0 0.0 0.0 0.0 -3,0 0.0007 - -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182610 ENSMUSP00000138231 TRANSLATION protein_coding - - 1 418.0 0.0 9.08 0.0 251.9 0.0 -4,-7 0.001 11 0.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000211813 ENSMUSP00000148296 TRANSLATION protein_coding start/stop - 5 121.0 0.0 1.8 0.0 63.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182876 - NO_TRANSLATION retained_intron ENSMUSG00000032826 Ank2 ENSMUST00000044443 ENSMUSP00000043765 TRANSLATION protein_coding - CCDS38625.1 1 1050.0 0.0 12.86 0.0 198.0 0.0 -4,-5 0.0667 28 0.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182547 ENSMUSP00000138602 TRANSLATION protein_coding - - 1 489.0 0.0 11.38 0.0 275.1 0.0 -4,-5 0.0003 15 0.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000183097 - NO_TRANSLATION retained_intron ENSMUSG00000032826 Ank2 ENSMUST00000104965 - NO_TRANSLATION retained_intron ENSMUSG00000032826 Ank2 ENSMUST00000183095 ENSMUSP00000138487 TRANSLATION protein_coding stop - 5 90.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182711 ENSMUSP00000138781 TRANSLATION protein_coding stop - 1 1219.0 0.0 25.96 0.0 596.1 0.0 -4,-6 0.1201 37 -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182025 ENSMUSP00000138157 TRANSLATION nonsense_mediated_decay start - 5 108.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000182316 - NO_TRANSLATION retained_intron ENSMUSG00000032826 Ank2 ENSMUST00000182118 ENSMUSP00000138323 TRANSLATION protein_coding start/stop - 5 122.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032826 Ank2 ENSMUST00000183234 - NO_TRANSLATION retained_intron ENSMUSG00000032826 Ank2 ENSMUST00000183075 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000163226 ENSMUSP00000133019 TRANSLATION protein_coding - CCDS80017.1 1 361.0 18.0 10.3 0.0 254.5 1.0 -4,-5 0.009 4 3.836 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000145454 ENSMUSP00000130769 TRANSLATION nonsense_mediated_decay - - 2 142.0 14.0 4.5 0.0 113.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000171950 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053819 Camk2d ENSMUST00000169051 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000171289 ENSMUSP00000129999 TRANSLATION protein_coding - CCDS84671.1 5 533.0 22.0 13.45 6.5 459.5 1.0 -4,-5 0.4696 13 15.324 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000106399 ENSMUSP00000102007 TRANSLATION protein_coding - CCDS38624.1 1 512.0 22.0 13.45 17.6 459.5 1.0 -4,-5 0.9937 12 18.0 ALTERNATIVE:1 ENSMUSG00000053819 Camk2d ENSMUST00000066452 ENSMUSP00000066996 TRANSLATION protein_coding start - 5 160.0 4.0 3.2896 0.0 205.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000129293 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000167985 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000066466 ENSMUSP00000063359 TRANSLATION protein_coding - CCDS80016.1 1 492.0 22.0 13.25 9.2 460.0 1.0 -4,-5 0.8346 10 15.574 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000167417 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000200171 ENSMUSP00000143677 TRANSLATION protein_coding - CCDS84670.1 5 533.0 22.0 13.45 6.5 460.0 1.0 -4,-5 0.4633 13 15.324 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000200010 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000134466 ENSMUSP00000114801 TRANSLATION nonsense_mediated_decay - - 2 147.0 14.0 4.632 0.0 113.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000199300 ENSMUSP00000143504 TRANSLATION protein_coding - CCDS17823.1 1 499.0 22.0 13.05 8.2 460.0 1.0 -4,-5 0.7081 10 14.938 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000197660 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000149311 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000170149 ENSMUSP00000130305 TRANSLATION protein_coding start - 3 169.0 4.0 3.45 0.0 205.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000106401 ENSMUSP00000102009 TRANSLATION protein_coding - - 5 488.0 22.0 13.014 5.2 460.0 1.0 -4,-5 0.2594 9 14.142 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000143383 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053819 Camk2d ENSMUST00000106400 ENSMUSP00000102008 TRANSLATION protein_coding - CCDS51065.1 1 478.0 22.0 13.05 12.5 460.0 1.0 -4,-5 0.8847 9 15.974 MINOR ENSMUSG00000053819 Camk2d ENSMUST00000131156 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000106402 ENSMUSP00000102010 TRANSLATION protein_coding - CCDS80015.1 1 512.0 22.0 13.45 17.6 460.0 1.0 -4,-5 1.0 12 18.0 PRINCIPAL:4 ENSMUSG00000053819 Camk2d ENSMUST00000147043 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000198637 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000134987 - NO_TRANSLATION retained_intron ENSMUSG00000053819 Camk2d ENSMUST00000131869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053819 Camk2d ENSMUST00000198487 - NO_TRANSLATION retained_intron ENSMUSG00000052430 Bmpr1b ENSMUST00000131273 ENSMUSP00000117478 TRANSLATION nonsense_mediated_decay - - 1 58.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000052430 Bmpr1b ENSMUST00000106232 ENSMUSP00000101839 TRANSLATION protein_coding - CCDS17874.1 1 502.0 19.0 8.68 16.8 234.4 1.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000052430 Bmpr1b ENSMUST00000029948 ENSMUSP00000029948 TRANSLATION protein_coding - CCDS17874.1 1 502.0 19.0 8.68 16.8 234.4 1.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000052430 Bmpr1b ENSMUST00000098568 ENSMUSP00000096167 TRANSLATION protein_coding - CCDS17874.1 1 502.0 19.0 8.68 16.8 234.4 1.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000052430 Bmpr1b ENSMUST00000106230 ENSMUSP00000101837 TRANSLATION protein_coding - CCDS17874.1 1 502.0 19.0 8.68 16.8 234.4 1.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000068823 Csde1 ENSMUST00000198174 ENSMUSP00000142395 TRANSLATION nonsense_mediated_decay start - 1 112.0 0.0 2.5 0.0 67.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000068823 Csde1 ENSMUST00000198906 - NO_TRANSLATION retained_intron ENSMUSG00000068823 Csde1 ENSMUST00000197488 ENSMUSP00000143524 TRANSLATION protein_coding - CCDS79990.1 1 767.0 0.0 13.57 11.3 311.5 0.0 -4,-5 0.8308 25 13.55 MINOR ENSMUSG00000068823 Csde1 ENSMUST00000200617 - NO_TRANSLATION retained_intron ENSMUSG00000068823 Csde1 ENSMUST00000197939 - NO_TRANSLATION retained_intron ENSMUSG00000068823 Csde1 ENSMUST00000199420 ENSMUSP00000142703 TRANSLATION protein_coding - CCDS79990.1 5 767.0 0.0 13.57 11.3 311.5 0.0 -4,-5 0.8308 25 13.55 MINOR ENSMUSG00000068823 Csde1 ENSMUST00000196685 - NO_TRANSLATION retained_intron ENSMUSG00000068823 Csde1 ENSMUST00000197827 ENSMUSP00000143503 TRANSLATION protein_coding - CCDS38569.1 5 798.0 0.0 13.77 22.1 311.5 0.0 -4,-5 1.0 27 16.0 PRINCIPAL:1 ENSMUSG00000068823 Csde1 ENSMUST00000199571 ENSMUSP00000143028 TRANSLATION protein_coding - CCDS79990.1 5 767.0 0.0 13.57 11.3 311.5 0.0 -4,-5 0.8308 25 13.55 MINOR ENSMUSG00000068823 Csde1 ENSMUST00000029446 ENSMUSP00000029446 TRANSLATION protein_coding - CCDS38569.1 1 798.0 0.0 13.77 22.1 311.5 0.0 -4,-5 1.0 27 16.0 PRINCIPAL:1 ENSMUSG00000068823 Csde1 ENSMUST00000195889 ENSMUSP00000142647 TRANSLATION nonsense_mediated_decay start - 5 151.0 0.0 4.0 0.0 67.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000068823 Csde1 ENSMUST00000197844 - NO_TRANSLATION retained_intron ENSMUSG00000068823 Csde1 ENSMUST00000199240 ENSMUSP00000143050 TRANSLATION protein_coding - CCDS79991.1 1 668.0 0.0 11.57 0.0 256.6 0.0 -4,-5 0.0488 21 4.308 MINOR ENSMUSG00000068823 Csde1 ENSMUST00000196521 - NO_TRANSLATION retained_intron ENSMUSG00000068823 Csde1 ENSMUST00000198180 ENSMUSP00000142983 TRANSLATION protein_coding - CCDS79990.1 1 767.0 0.0 13.57 11.3 311.5 0.0 -4,-5 0.8308 25 13.55 MINOR ENSMUSG00000068823 Csde1 ENSMUST00000198944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068823 Csde1 ENSMUST00000197154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045328 Cenpe ENSMUST00000200616 - NO_TRANSLATION retained_intron ENSMUSG00000045328 Cenpe ENSMUST00000197369 ENSMUSP00000143435 TRANSLATION protein_coding start/stop - 3 194.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000045328 Cenpe ENSMUST00000197273 - NO_TRANSLATION retained_intron ENSMUSG00000045328 Cenpe ENSMUST00000199497 - NO_TRANSLATION retained_intron ENSMUSG00000045328 Cenpe ENSMUST00000062893 ENSMUSP00000057938 TRANSLATION protein_coding - CCDS51072.1 5 2471.0 11.0 9.95 0.0 367.8 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000010136 Pifo ENSMUST00000066319 ENSMUSP00000069454 TRANSLATION protein_coding - CCDS51037.1 1 207.0 0.0 0.0 0.4 18.0 0.0 -4,-5 1.0 2 2.0 PRINCIPAL:2 ENSMUSG00000010136 Pifo ENSMUST00000010280 ENSMUSP00000010280 TRANSLATION protein_coding - CCDS51038.1 1 246.0 0.0 0.0 0.4 18.0 0.0 -4,-5 0.2048 2 2.0 ALTERNATIVE:2 ENSMUSG00000045566 Sprr4 ENSMUST00000062129 ENSMUSP00000051559 TRANSLATION protein_coding - CCDS38513.1 - 76.0 0.0 0.0 0.3 0.0 0.0 -4,-6 0.8676 - 0.0 PRINCIPAL:1 ENSMUSG00000027967 Neurog2 ENSMUST00000029587 ENSMUSP00000029587 TRANSLATION protein_coding - CCDS17825.1 1 263.0 0.0 0.5 5.7 54.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028085 Gatb ENSMUST00000029726 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028085 Gatb ENSMUST00000127348 ENSMUSP00000119949 TRANSLATION protein_coding - CCDS17441.1 1 557.0 14.0 7.95 11.0 153.0 0.0 -4,0 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000028085 Gatb ENSMUST00000107672 ENSMUSP00000103299 TRANSLATION protein_coding - - 1 472.0 14.0 6.75 0.0 57.6 0.0 -4,0 0.0002 9 9.876 MINOR ENSMUSG00000028085 Gatb ENSMUST00000134273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028085 Gatb ENSMUST00000107674 ENSMUSP00000103301 TRANSLATION protein_coding - - 1 553.0 14.0 7.35 0.0 115.9 0.0 -4,0 0.0323 9 14.574 MINOR ENSMUSG00000027506 Tpd52 ENSMUST00000145905 ENSMUSP00000123147 TRANSLATION protein_coding stop - 5 179.0 0.0 3.63 0.0 244.7 0.0 -4,-5 0.0406 9 -2.0 MINOR ENSMUSG00000027506 Tpd52 ENSMUST00000134788 ENSMUSP00000119899 TRANSLATION protein_coding stop - 5 206.0 0.0 3.63 0.0 226.7 0.0 -4,-5 0.0181 9 -2.0 MINOR ENSMUSG00000027506 Tpd52 ENSMUST00000091355 ENSMUSP00000088914 TRANSLATION protein_coding - CCDS38384.1 1 199.0 0.0 3.13 3.3 241.0 0.0 -4,-5 0.4788 9 5.752 MINOR ENSMUSG00000027506 Tpd52 ENSMUST00000120143 ENSMUSP00000112830 TRANSLATION protein_coding - CCDS50860.1 1 185.0 0.0 3.63 7.1 244.7 0.0 -4,-5 1.0 9 10.0 ALTERNATIVE:1 ENSMUSG00000027506 Tpd52 ENSMUST00000129736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027506 Tpd52 ENSMUST00000124956 ENSMUSP00000119077 TRANSLATION protein_coding stop - 5 77.0 0.0 1.75 0.0 114.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000027506 Tpd52 ENSMUST00000094381 ENSMUSP00000091943 TRANSLATION protein_coding - CCDS38387.1 3 247.0 0.0 2.8 5.9 238.7 0.0 -4,-5 0.5718 10 5.944 MINOR ENSMUSG00000027506 Tpd52 ENSMUST00000155450 ENSMUSP00000120317 TRANSLATION nonsense_mediated_decay - - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027506 Tpd52 ENSMUST00000121038 ENSMUSP00000113368 TRANSLATION protein_coding - - 5 162.0 0.0 3.63 0.0 234.7 0.0 -4,-5 0.0194 9 6.0 MINOR ENSMUSG00000027506 Tpd52 ENSMUST00000091354 ENSMUSP00000088913 TRANSLATION protein_coding - CCDS38386.1 1 224.0 0.0 3.63 6.6 244.7 0.0 -4,-5 0.752 10 9.836 PRINCIPAL:3 ENSMUSG00000027506 Tpd52 ENSMUST00000063496 ENSMUSP00000066826 TRANSLATION protein_coding - CCDS38385.1 2 194.0 0.0 3.3 1.1 236.9 0.0 -4,-5 0.089 9 6.038 MINOR ENSMUSG00000027845 Dclre1b ENSMUST00000063502 ENSMUSP00000067695 TRANSLATION protein_coding - CCDS17695.1 1 415.0 0.0 1.8 0.0 41.1 0.0 -4,-5 0.1551 1 6.18 MINOR ENSMUSG00000027845 Dclre1b ENSMUST00000106834 ENSMUSP00000102447 TRANSLATION protein_coding - CCDS17694.1 5 541.0 6.0 4.71 0.1 40.5 0.0 -4,-2 1.0 1 17.91 PRINCIPAL:1 ENSMUSG00000027845 Dclre1b ENSMUST00000128716 ENSMUSP00000121063 TRANSLATION nonsense_mediated_decay - - 5 81.0 4.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000027845 Dclre1b ENSMUST00000147894 - NO_TRANSLATION retained_intron ENSMUSG00000027845 Dclre1b ENSMUST00000029435 ENSMUSP00000029435 TRANSLATION protein_coding - CCDS17694.1 1 541.0 6.0 4.71 0.1 40.5 0.0 -4,-2 1.0 1 17.91 PRINCIPAL:1 ENSMUSG00000027845 Dclre1b ENSMUST00000198835 - NO_TRANSLATION retained_intron ENSMUSG00000027845 Dclre1b ENSMUST00000198752 ENSMUSP00000143067 TRANSLATION protein_coding start - 1 98.0 2.0 2.41 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027845 Dclre1b ENSMUST00000106832 ENSMUSP00000102445 TRANSLATION protein_coding - - 1 213.0 6.0 3.99 0.0 0.0 0.0 -4,-2 0.0007 1 10.56 MINOR ENSMUSG00000074637 Sox2 ENSMUST00000099151 ENSMUSP00000096755 TRANSLATION protein_coding - CCDS38413.1 - 319.0 0.0 0.5 16.6 225.4 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000027702 Lrrc34 ENSMUST00000029252 ENSMUSP00000029252 TRANSLATION protein_coding - CCDS38405.1 1 415.0 0.0 9.5 0.4 112.0 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000027680 Fxr1 ENSMUST00000197694 ENSMUSP00000142441 TRANSLATION protein_coding - CCDS79896.1 5 621.0 0.0 9.0 11.2 405.4 0.0 -4,-5 0.6128 18 8.368 MINOR ENSMUSG00000027680 Fxr1 ENSMUST00000200392 ENSMUSP00000143392 TRANSLATION protein_coding - CCDS50890.1 1 539.0 0.0 9.0 6.2 312.7 0.0 -4,-5 0.3321 15 7.072 MINOR ENSMUSG00000027680 Fxr1 ENSMUST00000198051 ENSMUSP00000142847 TRANSLATION protein_coding - - 5 568.0 0.0 9.0 8.2 408.3 0.0 -4,-5 0.2761 17 7.922 MINOR ENSMUSG00000027680 Fxr1 ENSMUST00000200425 - NO_TRANSLATION retained_intron ENSMUSG00000027680 Fxr1 ENSMUST00000001620 ENSMUSP00000001620 TRANSLATION protein_coding - CCDS50891.1 5 677.0 0.0 9.0 20.4 501.0 0.0 -4,-5 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000027680 Fxr1 ENSMUST00000196519 - NO_TRANSLATION retained_intron ENSMUSG00000027680 Fxr1 ENSMUST00000200086 ENSMUSP00000143562 TRANSLATION nonsense_mediated_decay - - 5 54.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027680 Fxr1 ENSMUST00000167354 ENSMUSP00000130216 TRANSLATION protein_coding - - 5 454.0 0.0 6.5 2.1 256.6 0.0 -4,-5 0.0285 12 1.23 MINOR ENSMUSG00000027680 Fxr1 ENSMUST00000197853 ENSMUSP00000143614 TRANSLATION protein_coding start - 3 133.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000090210 Itga10 ENSMUST00000127607 - NO_TRANSLATION retained_intron ENSMUSG00000090210 Itga10 ENSMUST00000119365 ENSMUSP00000112393 TRANSLATION protein_coding - CCDS38557.2 1 1166.0 9.0 11.692 2.2 286.0 1.0 4,-1 1.0 3 14.928 PRINCIPAL:4 ENSMUSG00000090210 Itga10 ENSMUST00000029744 ENSMUSP00000029744 TRANSLATION protein_coding - - 5 1167.0 9.0 11.727 2.2 286.4 1.0 4,-1 0.8636 3 15.0 ALTERNATIVE:2 ENSMUSG00000078780 Gm5150 ENSMUST00000108347 ENSMUSP00000103984 TRANSLATION protein_coding - CCDS38395.1 1 299.0 0.0 2.066 0.1 107.2 1.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078780 Gm5150 ENSMUST00000194367 ENSMUSP00000141397 TRANSLATION protein_coding - CCDS38395.1 5 299.0 0.0 2.066 0.1 107.2 1.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041977 Arhgef11 ENSMUST00000152006 ENSMUSP00000122166 TRANSLATION nonsense_mediated_decay - - 1 608.0 0.0 8.3675 0.0 281.4 0.0 -4,-7 0.0009 10 -2.0 MINOR ENSMUSG00000041977 Arhgef11 ENSMUST00000142799 - NO_TRANSLATION retained_intron ENSMUSG00000041977 Arhgef11 ENSMUST00000039476 ENSMUSP00000039900 TRANSLATION protein_coding - CCDS38472.1 1 1552.0 0.0 17.1675 0.0 409.8 0.0 -4,-7 1.0 24 12.0 PRINCIPAL:1 ENSMUSG00000041977 Arhgef11 ENSMUST00000212015 ENSMUSP00000148382 TRANSLATION protein_coding stop - 5 205.0 0.0 2.69 0.0 57.2 0.0 -4,0 0.0 4 -2.0 MINOR ENSMUSG00000041977 Arhgef11 ENSMUST00000136072 - NO_TRANSLATION retained_intron ENSMUSG00000041977 Arhgef11 ENSMUST00000129113 ENSMUSP00000118123 TRANSLATION protein_coding stop - 1 1475.0 0.0 17.1675 0.0 409.8 0.0 -4,-7 0.2942 22 -2.0 MINOR ENSMUSG00000095788 Sirpb1a ENSMUST00000191958 - NO_TRANSLATION retained_intron ENSMUSG00000095788 Sirpb1a ENSMUST00000194144 ENSMUSP00000141659 TRANSLATION protein_coding stop - 3 182.0 0.0 2.0 0.0 77.6 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000095788 Sirpb1a ENSMUST00000099201 ENSMUSP00000096807 TRANSLATION protein_coding - - 5 397.0 0.0 4.0 0.3 145.8 0.0 1,-3 0.3024 - 8.0 ALTERNATIVE:2 ENSMUSG00000095788 Sirpb1a ENSMUST00000192700 ENSMUSP00000141504 TRANSLATION protein_coding - CCDS17252.1 1 391.0 0.0 4.0 0.3 145.8 0.0 1,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000040600 Eps8l3 ENSMUST00000037375 ENSMUSP00000042004 TRANSLATION protein_coding - CCDS38594.1 1 600.0 0.0 4.75 1.5 172.7 0.0 -4,-1 1.0 19 13.0 PRINCIPAL:1 ENSMUSG00000040600 Eps8l3 ENSMUST00000199990 ENSMUSP00000143754 TRANSLATION protein_coding stop - 2 89.0 0.0 1.4 0.0 91.9 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000040600 Eps8l3 ENSMUST00000200198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039735 Fnbp1l ENSMUST00000239148 ENSMUSP00000158906 TRANSLATION protein_coding - - - 604.0 0.0 9.98 10.2 115.1 0.0 -4,-5 0.3809 18 13.476 MINOR ENSMUSG00000039735 Fnbp1l ENSMUST00000197342 - NO_TRANSLATION retained_intron ENSMUSG00000039735 Fnbp1l ENSMUST00000162947 ENSMUSP00000124947 TRANSLATION protein_coding - CCDS51062.1 5 609.0 0.0 9.98 10.2 115.1 0.0 -4,-5 0.5534 19 13.476 MINOR ENSMUSG00000039735 Fnbp1l ENSMUST00000162884 - NO_TRANSLATION retained_intron ENSMUSG00000039735 Fnbp1l ENSMUST00000197259 ENSMUSP00000143237 TRANSLATION protein_coding start - 5 451.0 0.0 6.4 0.0 46.9 0.0 -4,-5 0.0 15 -2.0 MINOR ENSMUSG00000039735 Fnbp1l ENSMUST00000162409 ENSMUSP00000124439 TRANSLATION protein_coding - CCDS17811.2 5 551.0 0.0 9.98 25.9 115.1 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000027793 Ccna1 ENSMUST00000198320 ENSMUSP00000143447 TRANSLATION protein_coding - CCDS17356.1 1 421.0 0.0 5.1 12.5 258.3 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027793 Ccna1 ENSMUST00000197238 ENSMUSP00000142692 TRANSLATION protein_coding - CCDS17356.1 5 421.0 0.0 5.1 12.5 258.3 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027793 Ccna1 ENSMUST00000199144 ENSMUSP00000143275 TRANSLATION protein_coding stop - 5 165.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000027793 Ccna1 ENSMUST00000029368 ENSMUSP00000029368 TRANSLATION protein_coding - CCDS17356.1 1 421.0 0.0 5.1 12.5 258.3 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027793 Ccna1 ENSMUST00000199352 ENSMUSP00000143555 TRANSLATION protein_coding stop - 5 93.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000027793 Ccna1 ENSMUST00000198102 ENSMUSP00000142706 TRANSLATION protein_coding start - 3 250.0 0.0 3.84 0.0 207.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051136 Ghsr ENSMUST00000057186 ENSMUSP00000061153 TRANSLATION protein_coding - CCDS17273.1 1 364.0 0.0 2.0 10.3 168.4 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095028 Sirpb1b ENSMUST00000192382 ENSMUSP00000142068 TRANSLATION protein_coding - - 5 397.0 0.0 4.075 1.3 148.3 0.0 2,-2 0.3317 - 9.0 ALTERNATIVE:2 ENSMUSG00000095028 Sirpb1b ENSMUST00000195778 ENSMUSP00000141533 TRANSLATION protein_coding stop - 5 182.0 0.0 2.075 0.0 78.3 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000095028 Sirpb1b ENSMUST00000091319 ENSMUSP00000088869 TRANSLATION protein_coding - CCDS50867.1 1 391.0 0.0 4.075 1.3 148.3 0.0 2,-2 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000095028 Sirpb1b ENSMUST00000193767 - NO_TRANSLATION retained_intron ENSMUSG00000027843 Ptpn22 ENSMUST00000196385 - NO_TRANSLATION retained_intron ENSMUSG00000027843 Ptpn22 ENSMUST00000197997 - NO_TRANSLATION retained_intron ENSMUSG00000027843 Ptpn22 ENSMUST00000198530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027843 Ptpn22 ENSMUST00000029433 ENSMUSP00000029433 TRANSLATION protein_coding - CCDS38577.1 1 802.0 12.0 8.75 0.1 259.2 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000027843 Ptpn22 ENSMUST00000198701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027843 Ptpn22 ENSMUST00000146071 ENSMUSP00000122307 TRANSLATION nonsense_mediated_decay - - 1 715.0 12.0 8.75 0.0 259.2 0.0 -4,-5 0.0833 4 -2.0 MINOR ENSMUSG00000027843 Ptpn22 ENSMUST00000134373 - NO_TRANSLATION retained_intron ENSMUSG00000027843 Ptpn22 ENSMUST00000126548 - NO_TRANSLATION retained_intron ENSMUSG00000005968 Tuft1 ENSMUST00000006123 ENSMUSP00000006123 TRANSLATION protein_coding - CCDS17595.1 1 390.0 0.0 1.425 11.0 0.0 0.0 -4,-5 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000005968 Tuft1 ENSMUST00000196655 ENSMUSP00000142537 TRANSLATION protein_coding - - 5 335.0 0.0 1.425 2.5 0.0 0.0 -4,-6 0.2001 8 6.45 MINOR ENSMUSG00000005968 Tuft1 ENSMUST00000200407 ENSMUSP00000143473 TRANSLATION protein_coding stop - 5 174.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0084 5 -2.0 MINOR ENSMUSG00000005968 Tuft1 ENSMUST00000196496 ENSMUSP00000143416 TRANSLATION nonsense_mediated_decay - - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0076 1 -2.0 MINOR ENSMUSG00000005968 Tuft1 ENSMUST00000196733 ENSMUSP00000143278 TRANSLATION protein_coding - CCDS79975.1 1 365.0 0.0 1.425 0.0 0.0 0.0 -4,-5 0.1949 10 6.0 MINOR ENSMUSG00000005968 Tuft1 ENSMUST00000198456 - NO_TRANSLATION retained_intron ENSMUSG00000027794 Sohlh2 ENSMUST00000029369 ENSMUSP00000029369 TRANSLATION protein_coding - CCDS17358.1 1 467.0 0.0 0.0 0.4 35.1 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000005813 Metap1 ENSMUST00000197531 ENSMUSP00000143048 TRANSLATION protein_coding - - 1 142.0 7.0 1.35 0.0 74.7 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000005813 Metap1 ENSMUST00000029804 ENSMUSP00000029804 TRANSLATION protein_coding - CCDS17869.1 1 386.0 23.0 7.85 27.7 248.6 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000005813 Metap1 ENSMUST00000195910 - NO_TRANSLATION retained_intron ENSMUSG00000005813 Metap1 ENSMUST00000200365 - NO_TRANSLATION retained_intron ENSMUSG00000005813 Metap1 ENSMUST00000199303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005813 Metap1 ENSMUST00000198492 - NO_TRANSLATION retained_intron ENSMUSG00000005813 Metap1 ENSMUST00000198700 ENSMUSP00000143215 TRANSLATION protein_coding start - 5 116.0 5.0 2.75 0.0 24.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039304 Tnfsf10 ENSMUST00000046383 ENSMUSP00000040271 TRANSLATION protein_coding - CCDS17272.1 1 291.0 0.0 2.6 0.4 152.7 1.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000039304 Tnfsf10 ENSMUST00000174840 ENSMUSP00000133917 TRANSLATION protein_coding - - 5 228.0 0.0 1.9 0.0 57.4 1.0 -4,-5 0.0025 3 4.668 MINOR ENSMUSG00000050192 Eif5a2 ENSMUST00000060500 ENSMUSP00000050289 TRANSLATION protein_coding - CCDS17277.1 1 153.0 0.0 3.5 36.9 93.3 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000027870 Hao2 ENSMUST00000029464 ENSMUSP00000029464 TRANSLATION protein_coding - CCDS17671.1 1 353.0 22.0 5.85 18.3 419.8 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000105734 Ctxnd2 ENSMUST00000196239 ENSMUSP00000147291 TRANSLATION protein_coding - - 1 59.0 0.0 1.0 0.0 32.2 0.0 -4,-7 0.7681 - 12.0 PRINCIPAL:1 ENSMUSG00000001016 Ilf2 ENSMUST00000198325 - NO_TRANSLATION retained_intron ENSMUSG00000001016 Ilf2 ENSMUST00000196769 - NO_TRANSLATION retained_intron ENSMUSG00000001016 Ilf2 ENSMUST00000198738 - NO_TRANSLATION retained_intron ENSMUSG00000001016 Ilf2 ENSMUST00000197644 - NO_TRANSLATION retained_intron ENSMUSG00000001016 Ilf2 ENSMUST00000001042 ENSMUSP00000001042 TRANSLATION protein_coding - CCDS17530.1 1 390.0 15.0 10.25 11.3 319.3 0.0 -4,-7 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000001016 Ilf2 ENSMUST00000198641 - NO_TRANSLATION retained_intron ENSMUSG00000039131 Gipc2 ENSMUST00000152283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039131 Gipc2 ENSMUST00000152680 - NO_TRANSLATION retained_intron ENSMUSG00000039131 Gipc2 ENSMUST00000046614 ENSMUSP00000037328 TRANSLATION protein_coding - CCDS17914.1 1 314.0 0.0 4.35 11.0 37.9 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000039131 Gipc2 ENSMUST00000133102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039131 Gipc2 ENSMUST00000133672 - NO_TRANSLATION retained_intron ENSMUSG00000039131 Gipc2 ENSMUST00000130196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039131 Gipc2 ENSMUST00000128741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039131 Gipc2 ENSMUST00000197813 - NO_TRANSLATION retained_intron ENSMUSG00000039131 Gipc2 ENSMUST00000200501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069041 Slc25a31 ENSMUST00000091184 ENSMUSP00000088723 TRANSLATION protein_coding - CCDS17326.1 1 320.0 44.0 6.0 4.6 236.4 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000040086 Tnni3k ENSMUST00000146952 - NO_TRANSLATION retained_intron ENSMUSG00000040086 Tnni3k ENSMUST00000064076 ENSMUSP00000070561 TRANSLATION protein_coding - CCDS17928.1 1 834.0 18.0 13.05 21.7 379.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000040086 Tnni3k ENSMUST00000143410 ENSMUSP00000122478 TRANSLATION nonsense_mediated_decay - - 1 675.0 18.0 11.22 0.9 355.5 0.0 -4,-5 0.0175 - -2.0 MINOR ENSMUSG00000039831 Arhgap29 ENSMUST00000199550 - NO_TRANSLATION retained_intron ENSMUSG00000039831 Arhgap29 ENSMUST00000198594 - NO_TRANSLATION retained_intron ENSMUSG00000039831 Arhgap29 ENSMUST00000196479 ENSMUSP00000142817 TRANSLATION protein_coding stop - 3 272.0 0.0 2.7 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000039831 Arhgap29 ENSMUST00000196904 ENSMUSP00000143548 TRANSLATION protein_coding stop - 3 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039831 Arhgap29 ENSMUST00000198914 ENSMUSP00000143547 TRANSLATION protein_coding start - 1 859.0 8.0 3.44 0.0 174.5 0.0 -4,-5 0.0375 14 -2.0 MINOR ENSMUSG00000039831 Arhgap29 ENSMUST00000196984 ENSMUSP00000143079 TRANSLATION protein_coding stop - 3 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0221 - -2.0 MINOR ENSMUSG00000039831 Arhgap29 ENSMUST00000037958 ENSMUSP00000044624 TRANSLATION protein_coding - CCDS17807.1 1 1266.0 8.0 5.69 3.5 174.5 0.0 -4,-7 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000039831 Arhgap29 ENSMUST00000197155 ENSMUSP00000142945 TRANSLATION protein_coding stop - 1 780.0 8.0 5.25 0.0 104.9 0.0 -4,-7 0.0079 16 -2.0 MINOR ENSMUSG00000039831 Arhgap29 ENSMUST00000199081 - NO_TRANSLATION retained_intron ENSMUSG00000028100 Nudt17 ENSMUST00000200387 ENSMUSP00000142879 TRANSLATION protein_coding - - 1 131.0 2.0 1.83 0.0 27.4 0.0 -2,0 0.0 1 4.574 MINOR ENSMUSG00000028100 Nudt17 ENSMUST00000196773 - NO_TRANSLATION retained_intron ENSMUSG00000028100 Nudt17 ENSMUST00000171249 ENSMUSP00000129851 TRANSLATION protein_coding - CCDS51008.1 1 296.0 4.0 5.53 2.2 63.8 0.0 -2,0 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000028100 Nudt17 ENSMUST00000029742 ENSMUSP00000029742 TRANSLATION protein_coding - CCDS51009.1 1 313.0 3.0 4.45 0.0 35.3 0.0 -2,0 0.0117 4 10.158 MINOR ENSMUSG00000059834 Sclt1 ENSMUST00000146125 ENSMUSP00000117608 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0143 - -2.0 MINOR ENSMUSG00000059834 Sclt1 ENSMUST00000142908 - NO_TRANSLATION retained_intron ENSMUSG00000059834 Sclt1 ENSMUST00000156279 - NO_TRANSLATION retained_intron ENSMUSG00000059834 Sclt1 ENSMUST00000148769 ENSMUSP00000123392 TRANSLATION nonsense_mediated_decay - - 1 350.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0279 4 -2.0 MINOR ENSMUSG00000059834 Sclt1 ENSMUST00000140373 - NO_TRANSLATION retained_intron ENSMUSG00000059834 Sclt1 ENSMUST00000154773 ENSMUSP00000120108 TRANSLATION nonsense_mediated_decay start - 3 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0173 - -2.0 MINOR ENSMUSG00000059834 Sclt1 ENSMUST00000191629 - NO_TRANSLATION retained_intron ENSMUSG00000059834 Sclt1 ENSMUST00000026866 ENSMUSP00000026866 TRANSLATION protein_coding - CCDS38425.1 5 688.0 0.0 0.0 17.8 0.0 0.0 -4,-5 1.0 10 4.0 PRINCIPAL:1 ENSMUSG00000028271 Gtf2b ENSMUST00000029938 ENSMUSP00000029938 TRANSLATION protein_coding - CCDS17882.1 1 316.0 3.0 6.33 36.9 221.6 0.0 -4,-6 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000028271 Gtf2b ENSMUST00000196311 - NO_TRANSLATION retained_intron ENSMUSG00000027995 Tlr2 ENSMUST00000029623 ENSMUSP00000029623 TRANSLATION protein_coding - CCDS17435.1 1 784.0 0.0 1.0 9.6 173.2 0.0 3,-2 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000027695 Pld1 ENSMUST00000120834 ENSMUSP00000113810 TRANSLATION protein_coding - CCDS17275.1 1 1036.0 3.0 10.43 8.9 188.2 0.0 -4,-6 1.0 15 14.0 PRINCIPAL:4 ENSMUSG00000027695 Pld1 ENSMUST00000125338 ENSMUSP00000121318 TRANSLATION protein_coding stop - 3 126.0 0.0 0.0 0.0 30.4 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000027695 Pld1 ENSMUST00000195622 - NO_TRANSLATION retained_intron ENSMUSG00000027695 Pld1 ENSMUST00000131842 - NO_TRANSLATION retained_intron ENSMUSG00000027695 Pld1 ENSMUST00000123539 ENSMUSP00000118727 TRANSLATION protein_coding - - 5 1074.0 3.0 10.43 8.3 188.2 0.0 -4,-6 0.7782 15 13.772 ALTERNATIVE:1 ENSMUSG00000027695 Pld1 ENSMUST00000067757 ENSMUSP00000064694 TRANSLATION protein_coding - CCDS17275.1 1 1036.0 3.0 10.43 8.9 188.2 0.0 -4,-6 1.0 15 14.0 PRINCIPAL:4 ENSMUSG00000027695 Pld1 ENSMUST00000149017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027695 Pld1 ENSMUST00000127139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027695 Pld1 ENSMUST00000148827 ENSMUSP00000120273 TRANSLATION protein_coding start - 1 871.0 3.0 9.68 0.0 65.1 0.0 -4,-6 0.0111 10 -2.0 MINOR ENSMUSG00000027695 Pld1 ENSMUST00000126594 ENSMUSP00000121569 TRANSLATION protein_coding start/stop - 2 201.0 1.0 4.5 0.0 33.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000013707 Tnfaip8l2 ENSMUST00000013851 ENSMUSP00000013851 TRANSLATION protein_coding - CCDS17603.1 1 184.0 0.0 1.0 36.9 244.1 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000042766 Trim46 ENSMUST00000125952 ENSMUSP00000123533 TRANSLATION protein_coding stop - 3 37.0 7.0 0.8 0.0 33.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042766 Trim46 ENSMUST00000090924 ENSMUSP00000088442 TRANSLATION protein_coding - CCDS17498.1 1 541.0 13.0 2.4 0.8 71.8 0.0 -4,-5 0.2986 13 18.0 MINOR ENSMUSG00000042766 Trim46 ENSMUST00000041022 ENSMUSP00000036053 TRANSLATION protein_coding - CCDS17497.1 1 759.0 13.0 2.4 10.6 71.8 0.0 -4,-5 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000042766 Trim46 ENSMUST00000139419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042766 Trim46 ENSMUST00000107464 ENSMUSP00000103088 TRANSLATION protein_coding - - 5 736.0 13.0 2.4 4.7 71.8 0.0 -4,-5 0.5648 21 19.155 MINOR ENSMUSG00000042766 Trim46 ENSMUST00000143637 ENSMUSP00000119270 TRANSLATION nonsense_mediated_decay - - 5 447.0 13.0 2.4 0.0 71.8 0.0 -4,-5 0.0241 10 -2.0 MINOR ENSMUSG00000039710 Slc7a12 ENSMUST00000037321 ENSMUSP00000038574 TRANSLATION protein_coding - CCDS17246.1 1 465.0 0.0 4.33 0.1 75.1 9.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039710 Slc7a12 ENSMUST00000120801 ENSMUSP00000113566 TRANSLATION protein_coding - - 5 194.0 0.0 2.0 0.0 0.0 5.0 1,-3 0.0096 - 1.338 MINOR ENSMUSG00000039710 Slc7a12 ENSMUST00000120484 ENSMUSP00000112799 TRANSLATION protein_coding - - 5 194.0 0.0 2.0 0.0 0.0 5.0 1,-3 0.0096 - 1.338 MINOR ENSMUSG00000039865 Slc44a3 ENSMUST00000039197 ENSMUSP00000040210 TRANSLATION protein_coding - CCDS51060.1 1 656.0 0.0 0.0 0.0 269.4 0.0 -4,-7 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000039865 Slc44a3 ENSMUST00000198335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039865 Slc44a3 ENSMUST00000199422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027881 Prpf38b ENSMUST00000029480 ENSMUSP00000029480 TRANSLATION protein_coding - CCDS17770.1 1 542.0 0.0 0.115 2.6 195.5 0.0 -4,-6 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000027881 Prpf38b ENSMUST00000127478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027881 Prpf38b ENSMUST00000125208 - NO_TRANSLATION retained_intron ENSMUSG00000027881 Prpf38b ENSMUST00000156808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027881 Prpf38b ENSMUST00000197805 - NO_TRANSLATION retained_intron ENSMUSG00000027881 Prpf38b ENSMUST00000145720 - NO_TRANSLATION retained_intron ENSMUSG00000027881 Prpf38b ENSMUST00000199735 ENSMUSP00000142929 TRANSLATION nonsense_mediated_decay - - 5 182.0 0.0 0.0 0.0 65.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000027881 Prpf38b ENSMUST00000129273 ENSMUSP00000143724 TRANSLATION nonsense_mediated_decay - - 5 94.0 0.0 0.0 0.0 48.4 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000047940 Stpg2 ENSMUST00000062306 ENSMUSP00000051539 TRANSLATION protein_coding - CCDS17871.1 1 561.0 0.0 0.0 1.5 38.1 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000047940 Stpg2 ENSMUST00000106239 ENSMUSP00000101846 TRANSLATION protein_coding - - 5 561.0 0.0 0.0 1.5 38.1 0.0 -4,-5 0.7003 - 7.0 PRINCIPAL:1 ENSMUSG00000004038 Gstm3 ENSMUST00000004136 ENSMUSP00000004136 TRANSLATION protein_coding - CCDS17744.1 1 218.0 9.0 6.5 31.9 129.3 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000033233 Trim45 ENSMUST00000106980 ENSMUSP00000102593 TRANSLATION protein_coding - CCDS17678.1 1 580.0 20.0 2.5 8.7 147.7 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000033233 Trim45 ENSMUST00000094048 ENSMUSP00000091590 TRANSLATION protein_coding - - 5 531.0 14.0 2.5 0.1 117.1 0.0 -4,-7 0.0512 3 12.162 MINOR ENSMUSG00000033233 Trim45 ENSMUST00000037409 ENSMUSP00000043389 TRANSLATION protein_coding - CCDS17678.1 1 580.0 20.0 2.5 8.7 147.7 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000033233 Trim45 ENSMUST00000134993 ENSMUSP00000115669 TRANSLATION protein_coding - CCDS51018.1 1 757.0 20.0 2.5 0.0 147.7 0.0 -4,-7 0.1813 2 18.0 MINOR ENSMUSG00000025128 Bhlhe22 ENSMUST00000026120 ENSMUSP00000026120 TRANSLATION protein_coding - CCDS17253.1 - 355.0 0.0 0.4 1.2 51.5 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000041991 Hrnr ENSMUST00000093774 ENSMUSP00000091288 TRANSLATION protein_coding - - 1 3411.0 10.0 1.0 0.0 53.0 0.0 -4,-7 1.0 21 14.0 PRINCIPAL:4 ENSMUSG00000041991 Hrnr ENSMUST00000090856 ENSMUSP00000088369 TRANSLATION protein_coding - CCDS50979.1 5 3234.0 10.0 1.0 0.0 53.0 0.0 -4,-7 0.7794 21 14.0 ALTERNATIVE:2 ENSMUSG00000027977 Ndst3 ENSMUST00000137404 ENSMUSP00000118796 TRANSLATION nonsense_mediated_decay - - 1 642.0 10.0 1.15 1.1 826.1 1.0 -2,-5 0.0483 - -2.0 MINOR ENSMUSG00000027977 Ndst3 ENSMUST00000029602 ENSMUSP00000029602 TRANSLATION protein_coding - CCDS17818.1 1 873.0 21.0 6.648 20.3 969.7 1.0 -2,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000027977 Ndst3 ENSMUST00000172537 ENSMUSP00000133657 TRANSLATION protein_coding - CCDS17818.1 5 873.0 21.0 6.648 20.3 969.7 1.0 -2,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000027977 Ndst3 ENSMUST00000132896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027977 Ndst3 ENSMUST00000199825 - NO_TRANSLATION retained_intron ENSMUSG00000027977 Ndst3 ENSMUST00000132112 ENSMUSP00000120623 TRANSLATION protein_coding - CCDS80013.1 1 458.0 18.0 6.648 0.0 339.9 0.0 -4,-7 0.073 - 10.002 MINOR ENSMUSG00000027977 Ndst3 ENSMUST00000199046 - NO_TRANSLATION retained_intron ENSMUSG00000027977 Ndst3 ENSMUST00000124803 ENSMUSP00000122617 TRANSLATION protein_coding - CCDS80013.1 1 458.0 18.0 6.648 0.0 339.9 0.0 -4,-7 0.073 - 10.002 MINOR ENSMUSG00000027977 Ndst3 ENSMUST00000154668 ENSMUSP00000118207 TRANSLATION protein_coding - CCDS17818.1 5 873.0 21.0 6.648 20.3 969.7 1.0 -2,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000074486 Bglap2 ENSMUST00000098956 ENSMUSP00000096555 TRANSLATION protein_coding - CCDS17473.1 1 95.0 2.0 1.0 2.8 0.0 0.0 3,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000074655 Gm1527 ENSMUST00000099170 ENSMUSP00000096773 TRANSLATION protein_coding - CCDS38404.1 1 650.0 0.0 2.24 0.0 131.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049404 Rarres1 ENSMUST00000054825 ENSMUSP00000056728 TRANSLATION protein_coding - CCDS57216.1 1 283.0 0.0 2.27 1.0 333.1 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000027849 Syt6 ENSMUST00000117221 ENSMUSP00000113373 TRANSLATION protein_coding - CCDS71296.1 1 426.0 22.0 3.8 1.0 170.8 0.0 -4,-7 0.3307 12 14.0 ALTERNATIVE:2 ENSMUSG00000027849 Syt6 ENSMUST00000183637 ENSMUSP00000138874 TRANSLATION protein_coding stop - 5 88.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 4 -2.0 MINOR ENSMUSG00000027849 Syt6 ENSMUST00000090697 ENSMUSP00000088196 TRANSLATION protein_coding - CCDS38575.1 5 511.0 22.0 3.8 3.7 170.8 0.0 1,-3 1.0 12 15.0 PRINCIPAL:2 ENSMUSG00000027849 Syt6 ENSMUST00000121834 ENSMUSP00000112997 TRANSLATION protein_coding - CCDS38575.1 1 511.0 22.0 3.8 3.7 170.8 0.0 1,-3 1.0 12 15.0 PRINCIPAL:2 ENSMUSG00000027849 Syt6 ENSMUST00000136049 ENSMUSP00000118124 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 0.0 0.0 0.0 0.0 0,2 0.0004 - -2.0 MINOR ENSMUSG00000027849 Syt6 ENSMUST00000239027 ENSMUSP00000159100 TRANSLATION protein_coding - - - 529.0 22.0 3.8 0.1 170.8 0.0 1,-3 0.1875 12 14.0 ALTERNATIVE:2 ENSMUSG00000027849 Syt6 ENSMUST00000118117 ENSMUSP00000112486 TRANSLATION protein_coding - - 1 438.0 22.0 3.8 0.0 170.8 0.0 -4,-7 0.0455 12 14.0 ALTERNATIVE:2 ENSMUSG00000027849 Syt6 ENSMUST00000118563 ENSMUSP00000113287 TRANSLATION protein_coding - CCDS71297.1 1 342.0 12.0 1.8 0.0 86.0 0.0 -4,-7 0.0052 9 1.998 MINOR ENSMUSG00000027849 Syt6 ENSMUST00000151985 ENSMUSP00000119688 TRANSLATION nonsense_mediated_decay - - 1 93.0 0.0 0.0 0.0 0.0 0.0 1,2 0.0024 - -2.0 MINOR ENSMUSG00000027849 Syt6 ENSMUST00000132325 ENSMUSP00000116324 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 0.0 0.0 0,2 0.0004 - -2.0 MINOR ENSMUSG00000027811 4930579G24Rik ENSMUST00000029388 ENSMUSP00000029388 TRANSLATION protein_coding - CCDS50936.1 1 111.0 0.0 1.4 1.8 148.8 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000039717 Ralyl ENSMUST00000171075 ENSMUSP00000125848 TRANSLATION protein_coding - - 5 148.0 0.0 1.6 0.0 0.0 0.0 -4,-7 0.0 1 3.69 MINOR ENSMUSG00000039717 Ralyl ENSMUST00000108372 ENSMUSP00000104009 TRANSLATION protein_coding - CCDS50863.1 1 220.0 0.0 1.6 9.8 0.0 0.0 -4,-7 1.0 1 6.69 MINOR ENSMUSG00000039717 Ralyl ENSMUST00000193117 ENSMUSP00000148795 TRANSLATION protein_coding - CCDS84609.1 2 293.0 0.0 2.6 0.0 46.5 0.0 -4,-5 0.866 4 12.0 PRINCIPAL:1 ENSMUSG00000039717 Ralyl ENSMUST00000211860 ENSMUSP00000148430 TRANSLATION protein_coding stop - 5 163.0 0.0 1.864 0.0 46.5 0.0 -4,-6 0.0017 3 -2.0 MINOR ENSMUSG00000039717 Ralyl ENSMUST00000191806 ENSMUSP00000148406 TRANSLATION protein_coding stop - 2 85.0 0.0 1.0 0.0 46.3 0.0 -4,-5 0.0129 3 -2.0 MINOR ENSMUSG00000039717 Ralyl ENSMUST00000192209 ENSMUSP00000142094 TRANSLATION protein_coding - CCDS50864.1 3 164.0 0.0 1.6 0.1 0.0 0.0 -4,-7 0.0207 1 3.69 MINOR ENSMUSG00000039717 Ralyl ENSMUST00000108373 ENSMUSP00000148751 TRANSLATION protein_coding stop - 5 89.0 0.0 1.0 0.0 46.5 0.0 -4,-5 0.0155 3 -2.0 MINOR ENSMUSG00000028099 Polr3c ENSMUST00000125183 ENSMUSP00000123513 TRANSLATION protein_coding - - 1 139.0 0.0 2.33 0.0 84.2 0.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000028099 Polr3c ENSMUST00000128918 ENSMUSP00000119236 TRANSLATION nonsense_mediated_decay start - 3 193.0 0.0 3.03 0.0 97.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000028099 Polr3c ENSMUST00000029741 ENSMUSP00000029741 TRANSLATION protein_coding - CCDS51010.1 1 533.0 0.0 11.285 16.7 232.0 0.0 -4,-7 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000028099 Polr3c ENSMUST00000137009 - NO_TRANSLATION retained_intron ENSMUSG00000028099 Polr3c ENSMUST00000141377 ENSMUSP00000115300 TRANSLATION protein_coding - - 1 202.0 0.0 3.33 0.0 84.2 0.0 -4,-7 0.0003 5 0.0 MINOR ENSMUSG00000028099 Polr3c ENSMUST00000154679 ENSMUSP00000122435 TRANSLATION protein_coding - CCDS51010.1 5 533.0 0.0 11.285 16.7 232.0 0.0 -4,-7 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000039988 Ankrd13c ENSMUST00000199574 - NO_TRANSLATION retained_intron ENSMUSG00000039988 Ankrd13c ENSMUST00000196480 - NO_TRANSLATION retained_intron ENSMUSG00000039988 Ankrd13c ENSMUST00000198736 - NO_TRANSLATION retained_intron ENSMUSG00000039988 Ankrd13c ENSMUST00000199757 - NO_TRANSLATION retained_intron ENSMUSG00000039988 Ankrd13c ENSMUST00000197872 - NO_TRANSLATION retained_intron ENSMUSG00000039988 Ankrd13c ENSMUST00000040787 ENSMUSP00000038662 TRANSLATION protein_coding - CCDS17933.1 5 541.0 0.0 2.195 2.8 273.6 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000039988 Ankrd13c ENSMUST00000199008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039988 Ankrd13c ENSMUST00000199727 ENSMUSP00000143432 TRANSLATION nonsense_mediated_decay - - 1 249.0 0.0 1.985 0.0 41.6 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000039988 Ankrd13c ENSMUST00000200516 - NO_TRANSLATION retained_intron ENSMUSG00000042747 Krtcap2 ENSMUST00000132818 - NO_TRANSLATION retained_intron ENSMUSG00000042747 Krtcap2 ENSMUST00000168900 ENSMUSP00000130372 TRANSLATION protein_coding - CCDS79949.1 3 114.0 0.0 0.0 3.2 162.6 2.0 -4,-7 0.1092 1 5.162 MINOR ENSMUSG00000042747 Krtcap2 ENSMUST00000040888 ENSMUSP00000043540 TRANSLATION protein_coding - CCDS50960.1 1 136.0 0.0 0.0 20.5 184.1 3.0 0,-4 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000042747 Krtcap2 ENSMUST00000126691 - NO_TRANSLATION retained_intron ENSMUSG00000037531 Mrpl47 ENSMUST00000192021 - NO_TRANSLATION retained_intron ENSMUSG00000037531 Mrpl47 ENSMUST00000153564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037531 Mrpl47 ENSMUST00000043966 ENSMUSP00000048078 TRANSLATION protein_coding - CCDS17299.1 1 252.0 0.0 5.35 9.4 127.3 0.0 -4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000046688 Tifa ENSMUST00000166778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046688 Tifa ENSMUST00000163775 ENSMUSP00000132309 TRANSLATION protein_coding - CCDS38628.1 1 184.0 0.0 1.0 13.3 28.1 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000046688 Tifa ENSMUST00000164447 ENSMUSP00000126692 TRANSLATION protein_coding - CCDS38628.1 1 184.0 0.0 1.0 13.3 28.1 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000046688 Tifa ENSMUST00000054483 ENSMUSP00000054036 TRANSLATION protein_coding - CCDS38628.1 1 184.0 0.0 1.0 13.3 28.1 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000046688 Tifa ENSMUST00000171621 ENSMUSP00000127700 TRANSLATION protein_coding - CCDS38628.1 1 184.0 0.0 1.0 13.3 28.1 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000069114 Zbtb10 ENSMUST00000155203 ENSMUSP00000119386 TRANSLATION protein_coding - CCDS50861.1 5 861.0 10.0 1.32 0.1 116.6 0.0 -4,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000068874 Selenbp1 ENSMUST00000139949 - NO_TRANSLATION retained_intron ENSMUSG00000068874 Selenbp1 ENSMUST00000090839 ENSMUSP00000088349 TRANSLATION protein_coding - CCDS38540.1 1 472.0 0.0 10.25 30.8 738.1 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000068874 Selenbp1 ENSMUST00000140757 ENSMUSP00000118563 TRANSLATION nonsense_mediated_decay - - 5 123.0 0.0 2.5 0.0 177.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000068874 Selenbp1 ENSMUST00000134202 ENSMUSP00000120159 TRANSLATION nonsense_mediated_decay - - 5 123.0 0.0 2.5 0.0 177.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068874 Selenbp1 ENSMUST00000145551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027684 Mecom ENSMUST00000108270 ENSMUSP00000103905 TRANSLATION protein_coding - - 5 1042.0 38.0 5.91 4.9 204.9 0.0 -4,-5 0.6843 9 13.182 MINOR ENSMUSG00000027684 Mecom ENSMUST00000172694 ENSMUSP00000134303 TRANSLATION protein_coding - CCDS17281.2 1 718.0 31.0 5.91 4.7 168.1 0.0 -4,-5 0.193 5 6.246 MINOR ENSMUSG00000027684 Mecom ENSMUST00000173495 ENSMUSP00000134626 TRANSLATION protein_coding - - 5 1051.0 38.0 5.91 11.0 204.9 0.0 -4,-5 1.0 9 15.012 PRINCIPAL:1 ENSMUSG00000027684 Mecom ENSMUST00000172754 ENSMUSP00000134152 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 0.528 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027684 Mecom ENSMUST00000061088 ENSMUSP00000051057 TRANSLATION protein_coding start/stop - - 116.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027684 Mecom ENSMUST00000173899 ENSMUSP00000133410 TRANSLATION protein_coding stop - 5 994.0 38.0 8.904 0.0 204.9 0.0 -4,-7 0.2086 9 -2.0 MINOR ENSMUSG00000027684 Mecom ENSMUST00000173411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027684 Mecom ENSMUST00000173059 ENSMUSP00000133310 TRANSLATION protein_coding start - 5 843.0 31.0 8.504 0.0 168.1 0.0 -4,-5 0.0295 6 -2.0 MINOR ENSMUSG00000027684 Mecom ENSMUST00000170212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027684 Mecom ENSMUST00000174406 ENSMUSP00000133942 TRANSLATION protein_coding stop - 5 52.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027684 Mecom ENSMUST00000195690 - NO_TRANSLATION retained_intron ENSMUSG00000027684 Mecom ENSMUST00000166001 ENSMUSP00000128563 TRANSLATION protein_coding - - 1 949.0 38.0 5.91 0.0 204.9 0.0 -4,-5 0.0596 8 12.012 MINOR ENSMUSG00000027684 Mecom ENSMUST00000174413 ENSMUSP00000134278 TRANSLATION protein_coding start - 1 606.0 31.0 5.712 0.0 168.1 0.0 -4,-5 0.0045 4 -2.0 MINOR ENSMUSG00000027684 Mecom ENSMUST00000173022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027684 Mecom ENSMUST00000174428 - NO_TRANSLATION retained_intron ENSMUSG00000027684 Mecom ENSMUST00000172697 ENSMUSP00000134117 TRANSLATION protein_coding stop - 5 949.0 30.0 7.154 0.0 159.7 0.0 -4,-7 0.0167 9 -2.0 MINOR ENSMUSG00000027684 Mecom ENSMUST00000108271 ENSMUSP00000103906 TRANSLATION protein_coding - - 1 795.0 31.0 7.504 0.0 168.1 0.0 -4,-5 0.0131 6 8.322 MINOR ENSMUSG00000121904 ENSMUSG00000121904 ENSMUST00000249760 ENSMUSP00000159918 TRANSLATION protein_coding - - - 106.0 14.0 1.6 0.0 70.3 0.0 -,- 0.7658 - 18.0 PRINCIPAL:1 ENSMUSG00000023084 Lrrc71 ENSMUST00000174208 - NO_TRANSLATION retained_intron ENSMUSG00000023084 Lrrc71 ENSMUST00000023846 ENSMUSP00000023846 TRANSLATION protein_coding - CCDS50946.1 1 558.0 0.0 1.9785 6.3 50.6 0.0 -4,-6 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000023084 Lrrc71 ENSMUST00000174581 ENSMUSP00000134711 TRANSLATION protein_coding start - 3 153.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023084 Lrrc71 ENSMUST00000174381 - NO_TRANSLATION retained_intron ENSMUSG00000023084 Lrrc71 ENSMUST00000172985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027852 Nras ENSMUST00000199776 - NO_TRANSLATION retained_intron ENSMUSG00000027852 Nras ENSMUST00000199367 ENSMUSP00000143620 TRANSLATION protein_coding stop - 3 74.0 17.0 2.0 0.0 90.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000027852 Nras ENSMUST00000199049 ENSMUSP00000143644 TRANSLATION protein_coding stop - 3 183.0 24.0 4.75 0.0 194.7 0.0 -4,-5 0.0609 3 -2.0 MINOR ENSMUSG00000027852 Nras ENSMUST00000196355 ENSMUSP00000142438 TRANSLATION nonsense_mediated_decay - CCDS38570.1 5 189.0 24.0 4.75 36.9 194.7 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000027852 Nras ENSMUST00000197678 ENSMUSP00000142603 TRANSLATION protein_coding stop - 2 150.0 24.0 3.75 0.0 178.3 0.0 -4,-5 0.0031 2 -2.0 MINOR ENSMUSG00000027852 Nras ENSMUST00000200457 ENSMUSP00000142434 TRANSLATION nonsense_mediated_decay - - 2 46.0 10.0 1.198 0.0 38.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027852 Nras ENSMUST00000029445 ENSMUSP00000029445 TRANSLATION protein_coding - CCDS38570.1 1 189.0 24.0 4.75 36.9 194.7 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000027852 Nras ENSMUST00000128264 ENSMUSP00000123081 TRANSLATION nonsense_mediated_decay - - 5 46.0 10.0 1.198 0.0 38.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027852 Nras ENSMUST00000200069 ENSMUSP00000143391 TRANSLATION protein_coding - CCDS38570.1 2 189.0 24.0 4.75 36.9 194.7 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000027822 Slc33a1 ENSMUST00000160883 ENSMUSP00000125713 TRANSLATION protein_coding - CCDS17382.1 5 550.0 0.0 0.0 11.8 0.0 6.0 -4,-7 1.0 11 3.0 PRINCIPAL:1 ENSMUSG00000027822 Slc33a1 ENSMUST00000029402 ENSMUSP00000029402 TRANSLATION protein_coding - CCDS17382.1 1 550.0 0.0 0.0 11.8 0.0 6.0 -4,-7 1.0 11 3.0 PRINCIPAL:1 ENSMUSG00000027822 Slc33a1 ENSMUST00000161659 ENSMUSP00000123986 TRANSLATION protein_coding - CCDS17382.1 1 550.0 0.0 0.0 11.8 0.0 6.0 -4,-7 1.0 11 3.0 PRINCIPAL:1 ENSMUSG00000033910 Gucy1a1 ENSMUST00000192289 ENSMUSP00000141478 TRANSLATION protein_coding start - 3 66.0 0.0 1.0 0.0 25.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033910 Gucy1a1 ENSMUST00000191942 - NO_TRANSLATION retained_intron ENSMUSG00000033910 Gucy1a1 ENSMUST00000193924 ENSMUSP00000142138 TRANSLATION protein_coding - CCDS17429.1 1 691.0 7.0 5.33 18.5 362.0 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000033910 Gucy1a1 ENSMUST00000048976 ENSMUSP00000048918 TRANSLATION protein_coding - CCDS17429.1 1 691.0 7.0 5.33 18.5 362.0 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000033910 Gucy1a1 ENSMUST00000194788 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058400 Qrfpr ENSMUST00000091227 ENSMUSP00000088768 TRANSLATION protein_coding - CCDS17311.1 1 433.0 0.0 4.1 9.4 186.4 8.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058400 Qrfpr ENSMUST00000197447 ENSMUSP00000143773 TRANSLATION protein_coding - - 5 258.0 0.0 3.02 0.0 119.7 5.0 -4,-2 0.0054 - 5.838 MINOR ENSMUSG00000058400 Qrfpr ENSMUST00000197275 - NO_TRANSLATION retained_intron ENSMUSG00000093865 Lrit3 ENSMUST00000188978 - NO_TRANSLATION retained_intron ENSMUSG00000093865 Lrit3 ENSMUST00000185462 ENSMUSP00000140184 TRANSLATION protein_coding - CCDS57256.2 1 681.0 0.0 1.56 1.1 121.6 2.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000093865 Lrit3 ENSMUST00000179187 ENSMUSP00000136912 TRANSLATION protein_coding - - 5 560.0 0.0 1.4 0.0 103.0 2.0 4,-1 0.0047 - 10.266 MINOR ENSMUSG00000027905 Ddx20 ENSMUST00000200078 ENSMUSP00000142675 TRANSLATION nonsense_mediated_decay - - 5 139.0 11.0 1.666 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027905 Ddx20 ENSMUST00000090680 ENSMUSP00000088176 TRANSLATION protein_coding - CCDS38581.1 1 825.0 13.0 9.43 1.8 196.6 0.0 -4,-5 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000027905 Ddx20 ENSMUST00000132008 - NO_TRANSLATION retained_intron ENSMUSG00000094084 Tdpoz1 ENSMUST00000181541 ENSMUSP00000138008 TRANSLATION protein_coding - CCDS57231.1 1 365.0 0.0 0.64 0.0 120.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063273 Naa15 ENSMUST00000192197 ENSMUSP00000141886 TRANSLATION protein_coding start/stop - 3 237.0 0.0 5.0 0.0 152.9 0.0 -4,-5 0.0001 7 -2.0 MINOR ENSMUSG00000063273 Naa15 ENSMUST00000193267 - NO_TRANSLATION retained_intron ENSMUSG00000063273 Naa15 ENSMUST00000195430 - NO_TRANSLATION retained_intron ENSMUSG00000063273 Naa15 ENSMUST00000192523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063273 Naa15 ENSMUST00000193266 ENSMUSP00000141433 TRANSLATION protein_coding - - 1 815.0 0.0 16.182 3.4 760.1 0.0 -4,-5 0.1988 22 9.786 MINOR ENSMUSG00000063273 Naa15 ENSMUST00000029303 ENSMUSP00000029303 TRANSLATION protein_coding - CCDS17340.1 1 865.0 0.0 17.432 34.2 760.1 0.0 -4,-7 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000063273 Naa15 ENSMUST00000193694 - NO_TRANSLATION retained_intron ENSMUSG00000063273 Naa15 ENSMUST00000194685 - NO_TRANSLATION retained_intron ENSMUSG00000063273 Naa15 ENSMUST00000192419 ENSMUSP00000141965 TRANSLATION protein_coding stop - 5 126.0 0.0 3.0 0.0 24.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000096621 Gm5849 ENSMUST00000180151 ENSMUSP00000137232 TRANSLATION protein_coding - - 3 117.0 13.0 2.0 0.0 62.7 0.0 -4,-5 0.742 - 18.0 PRINCIPAL:1 ENSMUSG00000027907 S100a11 ENSMUST00000029515 ENSMUSP00000029515 TRANSLATION protein_coding - CCDS38525.1 1 98.0 10.0 2.0 4.7 94.9 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000034640 Tiparp ENSMUST00000154094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034640 Tiparp ENSMUST00000047906 ENSMUSP00000048051 TRANSLATION protein_coding - CCDS17388.1 1 657.0 3.0 1.56 9.2 116.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034640 Tiparp ENSMUST00000130705 ENSMUSP00000119951 TRANSLATION protein_coding stop - 3 205.0 3.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049300 Prmt6 ENSMUST00000106567 ENSMUSP00000102177 TRANSLATION protein_coding - CCDS38605.1 - 378.0 17.0 1.0 0.4 37.0 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000049300 Prmt6 ENSMUST00000190378 ENSMUSP00000140836 TRANSLATION protein_coding - CCDS38605.1 1 378.0 17.0 1.0 0.4 37.0 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000049300 Prmt6 ENSMUST00000168412 ENSMUSP00000129801 TRANSLATION nonsense_mediated_decay - CCDS38605.1 1 378.0 17.0 1.0 0.4 37.0 0.0 -4,-5 1.0 4 -2.0 MINOR ENSMUSG00000055891 Ubl4b ENSMUST00000052853 ENSMUSP00000100577 TRANSLATION protein_coding - CCDS38592.1 - 188.0 0.0 0.4 0.0 56.6 0.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000027848 Olfml3 ENSMUST00000029440 ENSMUSP00000029440 TRANSLATION protein_coding - CCDS17693.1 1 406.0 0.0 0.3 10.9 254.9 0.0 4,-1 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000027848 Olfml3 ENSMUST00000154145 - NO_TRANSLATION retained_intron ENSMUSG00000027848 Olfml3 ENSMUST00000157042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095522 Aadacl2fm3 ENSMUST00000194941 - NO_TRANSLATION unprocessed_pseudogene ENSMUSG00000095522 Aadacl2fm3 ENSMUST00000179799 ENSMUSP00000137307 TRANSLATION protein_coding - CCDS57214.1 5 401.0 16.0 4.75 11.8 25.7 0.0 -1,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000091175 S100a7l2 ENSMUST00000166173 ENSMUSP00000130512 TRANSLATION protein_coding - CCDS50973.1 1 92.0 0.0 2.0 0.0 32.1 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000027895 Kcnc4 ENSMUST00000009617 ENSMUSP00000009617 TRANSLATION protein_coding - CCDS17738.1 1 628.0 0.0 0.73 6.5 299.3 3.0 -4,-7 0.9387 3 10.229 ALTERNATIVE:1 ENSMUSG00000027895 Kcnc4 ENSMUST00000238670 ENSMUSP00000158751 TRANSLATION protein_coding - - - 666.0 0.0 0.73 8.4 299.3 3.0 -4,-7 1.0 3 11.0 PRINCIPAL:4 ENSMUSG00000005640 Insrr ENSMUST00000029711 ENSMUSP00000029711 TRANSLATION protein_coding - CCDS17454.1 1 1300.0 19.0 15.298 4.2 587.3 0.0 3,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000005640 Insrr ENSMUST00000166866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005640 Insrr ENSMUST00000166771 - NO_TRANSLATION retained_intron ENSMUSG00000091685 Gm17359 ENSMUST00000195157 ENSMUSP00000141352 TRANSLATION protein_coding stop - 2 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000091685 Gm17359 ENSMUST00000199658 ENSMUSP00000142709 TRANSLATION protein_coding - - 5 487.0 0.0 0.0 0.0 164.5 0.0 -4,-5 0.0653 1 4.662 MINOR ENSMUSG00000091685 Gm17359 ENSMUST00000164216 ENSMUSP00000130702 TRANSLATION protein_coding - CCDS50933.1 5 189.0 0.0 0.0 0.0 186.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000000561 Wdr77 ENSMUST00000130994 ENSMUSP00000120517 TRANSLATION nonsense_mediated_decay - - 1 60.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000561 Wdr77 ENSMUST00000010278 ENSMUSP00000010278 TRANSLATION protein_coding - CCDS17715.1 1 342.0 0.0 9.41 10.3 44.7 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000000561 Wdr77 ENSMUST00000127464 - NO_TRANSLATION retained_intron ENSMUSG00000000561 Wdr77 ENSMUST00000128005 ENSMUSP00000122465 TRANSLATION protein_coding start - 3 167.0 0.0 4.665 0.0 44.7 0.0 -4,-5 0.0018 5 -2.0 MINOR ENSMUSG00000000561 Wdr77 ENSMUST00000151263 - NO_TRANSLATION retained_intron ENSMUSG00000039519 Cyp7b1 ENSMUST00000035625 ENSMUSP00000037487 TRANSLATION protein_coding - CCDS17254.1 1 507.0 22.0 5.1 0.1 175.2 0.0 -3,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000090527 Aadacl2fm2 ENSMUST00000168156 ENSMUSP00000128877 TRANSLATION protein_coding - CCDS50916.1 5 401.0 3.0 4.75 10.3 34.3 0.0 -1,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000001865 Cpa3 ENSMUST00000191659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001865 Cpa3 ENSMUST00000001921 ENSMUSP00000001921 TRANSLATION protein_coding - CCDS17262.1 1 417.0 8.0 9.875 16.7 365.4 0.0 3,-2 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000004897 Hdgf ENSMUST00000162631 ENSMUSP00000123832 TRANSLATION nonsense_mediated_decay - - 3 84.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000004897 Hdgf ENSMUST00000249431 ENSMUSP00000159757 TRANSLATION protein_coding - - - 321.0 0.0 2.5 0.0 56.3 0.0 -4,-7 0.0273 14 12.0 MINOR ENSMUSG00000004897 Hdgf ENSMUST00000005017 ENSMUSP00000005017 TRANSLATION protein_coding - CCDS17457.1 1 237.0 0.0 2.5 9.2 56.3 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000004897 Hdgf ENSMUST00000160312 - NO_TRANSLATION retained_intron ENSMUSG00000004897 Hdgf ENSMUST00000161616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004897 Hdgf ENSMUST00000159492 ENSMUSP00000124803 TRANSLATION protein_coding stop - 3 202.0 0.0 1.75 5.4 0.0 0.0 -4,-5 0.2461 10 -2.0 MINOR ENSMUSG00000004897 Hdgf ENSMUST00000160198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070372 Capza1 ENSMUST00000196924 - NO_TRANSLATION retained_intron ENSMUSG00000070372 Capza1 ENSMUST00000195912 ENSMUSP00000142606 TRANSLATION protein_coding stop - 2 112.0 0.0 3.75 0.0 61.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000070372 Capza1 ENSMUST00000094028 ENSMUSP00000102381 TRANSLATION protein_coding - CCDS38580.1 1 286.0 0.0 7.75 36.9 357.2 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000070372 Capza1 ENSMUST00000155476 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000140480 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000136287 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000138950 ENSMUSP00000118092 TRANSLATION protein_coding start - 5 1507.0 0.0 0.0 0.0 546.5 0.0 -4,-5 0.2493 30 -2.0 MINOR ENSMUSG00000037270 Bltp1 ENSMUST00000129787 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000128061 ENSMUSP00000116345 TRANSLATION nonsense_mediated_decay start - 5 243.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 1 -2.0 MINOR ENSMUSG00000037270 Bltp1 ENSMUST00000143675 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000136746 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000196036 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000211820 ENSMUSP00000148720 TRANSLATION protein_coding stop - 5 2864.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0836 40 -2.0 MINOR ENSMUSG00000037270 Bltp1 ENSMUST00000123916 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000146948 ENSMUSP00000121356 TRANSLATION protein_coding start - 5 1711.0 0.0 0.0 0.0 546.6 0.0 -4,-5 0.2595 31 -2.0 MINOR ENSMUSG00000037270 Bltp1 ENSMUST00000198742 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000195933 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000138152 ENSMUSP00000117809 TRANSLATION protein_coding start/stop - 3 227.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.001 2 -2.0 MINOR ENSMUSG00000037270 Bltp1 ENSMUST00000152881 ENSMUSP00000118366 TRANSLATION nonsense_mediated_decay - - 1 329.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0018 5 -2.0 MINOR ENSMUSG00000037270 Bltp1 ENSMUST00000152564 ENSMUSP00000117808 TRANSLATION protein_coding - CCDS50894.1 5 5005.0 0.0 0.0 0.0 546.7 0.0 -4,-7 1.0 79 6.0 PRINCIPAL:1 ENSMUSG00000037270 Bltp1 ENSMUST00000129721 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000108145 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000139219 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000200245 - NO_TRANSLATION retained_intron ENSMUSG00000037270 Bltp1 ENSMUST00000141740 ENSMUSP00000117814 TRANSLATION protein_coding start - 1 1586.0 0.0 0.0 0.0 546.5 0.0 -4,-7 0.2629 33 -2.0 MINOR ENSMUSG00000037270 Bltp1 ENSMUST00000057272 ENSMUSP00000060199 TRANSLATION protein_coding - CCDS50894.1 5 5005.0 0.0 0.0 0.0 546.7 0.0 -4,-7 1.0 79 6.0 PRINCIPAL:1 ENSMUSG00000037270 Bltp1 ENSMUST00000148698 - NO_TRANSLATION retained_intron ENSMUSG00000015854 Cd5l ENSMUST00000015998 ENSMUSP00000015998 TRANSLATION protein_coding - CCDS17451.1 1 352.0 0.0 2.2 2.1 292.5 0.0 4,-1 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000037174 Elf2 ENSMUST00000108051 ENSMUSP00000103686 TRANSLATION protein_coding - CCDS71240.1 1 521.0 0.0 1.65 9.0 147.9 0.0 -4,-5 0.5072 10 8.858 MINOR ENSMUSG00000037174 Elf2 ENSMUST00000194209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037174 Elf2 ENSMUST00000163748 ENSMUSP00000126871 TRANSLATION protein_coding - CCDS17337.1 1 593.0 0.0 1.65 15.6 236.8 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000037174 Elf2 ENSMUST00000062009 ENSMUSP00000061076 TRANSLATION protein_coding - CCDS71242.1 1 581.0 0.0 1.65 10.1 236.8 0.0 -4,-5 0.9194 9 14.492 MINOR ENSMUSG00000037174 Elf2 ENSMUST00000195432 ENSMUSP00000142300 TRANSLATION protein_coding - - 1 59.0 0.0 0.0 0.0 32.4 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000037174 Elf2 ENSMUST00000184677 ENSMUSP00000139199 TRANSLATION nonsense_mediated_decay - - 3 113.0 0.0 0.0 0.0 30.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037174 Elf2 ENSMUST00000091144 ENSMUSP00000088678 TRANSLATION protein_coding - - 5 504.0 0.0 1.5 2.7 147.9 0.0 -4,-5 0.037 9 6.584 MINOR ENSMUSG00000037174 Elf2 ENSMUST00000108053 ENSMUSP00000103688 TRANSLATION protein_coding - CCDS71241.1 1 533.0 0.0 1.65 10.5 147.9 0.0 -4,-5 0.5518 10 9.27 MINOR ENSMUSG00000037174 Elf2 ENSMUST00000156983 ENSMUSP00000141525 TRANSLATION protein_coding stop - 5 65.0 0.0 0.0 0.0 32.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037174 Elf2 ENSMUST00000183463 ENSMUSP00000139360 TRANSLATION nonsense_mediated_decay - - 5 87.0 0.0 0.0 0.0 86.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037174 Elf2 ENSMUST00000194641 ENSMUSP00000141197 TRANSLATION protein_coding - CCDS17337.1 5 593.0 0.0 1.65 15.6 236.8 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000037174 Elf2 ENSMUST00000183338 ENSMUSP00000139358 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 0.0 0.0 85.5 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000037174 Elf2 ENSMUST00000193909 - NO_TRANSLATION retained_intron ENSMUSG00000028174 Rpe65 ENSMUST00000029824 ENSMUSP00000029824 TRANSLATION protein_coding - CCDS38683.1 1 533.0 8.0 11.78 31.1 362.4 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000028174 Rpe65 ENSMUST00000197771 ENSMUSP00000143390 TRANSLATION nonsense_mediated_decay - - 5 116.0 0.0 1.75 0.0 56.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028174 Rpe65 ENSMUST00000196999 ENSMUSP00000143654 TRANSLATION protein_coding - CCDS38683.1 1 533.0 8.0 11.78 31.1 362.4 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000005493 Msh4 ENSMUST00000188338 ENSMUSP00000140190 TRANSLATION protein_coding - - 2 870.0 12.0 6.572 0.0 487.7 0.0 -4,-7 0.1616 - 14.0 ALTERNATIVE:2 ENSMUSG00000005493 Msh4 ENSMUST00000190449 ENSMUSP00000140265 TRANSLATION protein_coding - CCDS80067.1 1 764.0 12.0 6.497 0.7 475.4 0.0 -4,-5 0.2217 - 13.184 ALTERNATIVE:2 ENSMUSG00000005493 Msh4 ENSMUST00000191083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005493 Msh4 ENSMUST00000191504 - NO_TRANSLATION retained_intron ENSMUSG00000005493 Msh4 ENSMUST00000005630 ENSMUSP00000005630 TRANSLATION protein_coding - CCDS38678.1 1 958.0 12.0 6.572 0.0 487.7 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000005493 Msh4 ENSMUST00000189189 - NO_TRANSLATION retained_intron ENSMUSG00000005493 Msh4 ENSMUST00000186220 - NO_TRANSLATION retained_intron ENSMUSG00000005493 Msh4 ENSMUST00000191606 - NO_TRANSLATION retained_intron ENSMUSG00000028019 Pdgfc ENSMUST00000129285 ENSMUSP00000118970 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000028019 Pdgfc ENSMUST00000143721 ENSMUSP00000122047 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000028019 Pdgfc ENSMUST00000029652 ENSMUSP00000029652 TRANSLATION protein_coding - CCDS17425.1 1 345.0 3.0 2.2 7.4 110.4 0.0 0,-4 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000027867 Spag17 ENSMUST00000143050 - NO_TRANSLATION retained_intron ENSMUSG00000027867 Spag17 ENSMUST00000164539 ENSMUSP00000134066 TRANSLATION protein_coding - CCDS57248.1 5 2320.0 0.0 0.0 0.0 0.0 0.0 -4,-5 1.0 5 0.0 PRINCIPAL:1 ENSMUSG00000027867 Spag17 ENSMUST00000127518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027867 Spag17 ENSMUST00000152586 - NO_TRANSLATION retained_intron ENSMUSG00000051392 Or13l2 ENSMUST00000199297 ENSMUSP00000149714 TRANSLATION protein_coding - CCDS17655.1 5 320.0 0.0 1.0 0.1 175.9 4.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000051392 Or13l2 ENSMUST00000060912 ENSMUSP00000057416 TRANSLATION protein_coding - CCDS17655.1 - 320.0 0.0 1.0 0.1 175.9 4.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000081058 H3c15 ENSMUST00000167403 ENSMUSP00000135215 TRANSLATION protein_coding - CCDS57240.1 - 136.0 0.0 1.0 31.8 181.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000015522 Arnt ENSMUST00000149051 - NO_TRANSLATION retained_intron ENSMUSG00000015522 Arnt ENSMUST00000147094 - NO_TRANSLATION retained_intron ENSMUSG00000015522 Arnt ENSMUST00000107160 ENSMUSP00000102778 TRANSLATION protein_coding - - 1 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000015522 Arnt ENSMUST00000107161 ENSMUSP00000102779 TRANSLATION protein_coding - - 1 760.0 0.0 5.9225 0.0 180.0 0.0 -4,-5 0.0357 11 10.998 MINOR ENSMUSG00000015522 Arnt ENSMUST00000147765 - NO_TRANSLATION retained_intron ENSMUSG00000015522 Arnt ENSMUST00000090804 ENSMUSP00000088313 TRANSLATION protein_coding - CCDS38546.1 1 776.0 0.0 5.9225 7.1 180.0 0.0 -4,-5 0.8417 11 12.828 MINOR ENSMUSG00000015522 Arnt ENSMUST00000102749 ENSMUSP00000099810 TRANSLATION protein_coding - CCDS17614.1 1 791.0 0.0 6.4225 11.0 180.0 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000015522 Arnt ENSMUST00000156653 - NO_TRANSLATION retained_intron ENSMUSG00000015522 Arnt ENSMUST00000140060 - NO_TRANSLATION retained_intron ENSMUSG00000015522 Arnt ENSMUST00000136413 ENSMUSP00000116688 TRANSLATION protein_coding start/stop - 5 126.0 0.0 2.1225 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000044098 Rsbn1 ENSMUST00000151927 ENSMUSP00000115693 TRANSLATION nonsense_mediated_decay start - 1 421.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0261 5 -2.0 MINOR ENSMUSG00000044098 Rsbn1 ENSMUST00000068879 ENSMUSP00000069246 TRANSLATION protein_coding - CCDS17697.1 1 795.0 1.0 0.735 3.8 0.0 0.0 -4,-2 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000044098 Rsbn1 ENSMUST00000185731 ENSMUSP00000140185 TRANSLATION protein_coding start/stop - 3 228.0 1.0 -0.85 0.0 0.0 0.0 -4,-7 0.0299 1 -2.0 MINOR ENSMUSG00000044098 Rsbn1 ENSMUST00000051139 ENSMUSP00000058934 TRANSLATION protein_coding - CCDS17697.1 1 795.0 1.0 0.735 3.8 0.0 0.0 -4,-2 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000027703 Lrriq4 ENSMUST00000172350 ENSMUSP00000127052 TRANSLATION protein_coding - CCDS38406.1 5 596.0 0.0 4.75 0.0 150.6 0.0 -4,-7 0.3451 - 7.802 ALTERNATIVE:2 ENSMUSG00000027703 Lrriq4 ENSMUST00000108265 ENSMUSP00000103900 TRANSLATION protein_coding - CCDS71229.1 1 581.0 0.0 4.85 0.0 150.6 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000027703 Lrriq4 ENSMUST00000108267 ENSMUSP00000103902 TRANSLATION protein_coding - CCDS38406.1 1 596.0 0.0 4.75 0.0 150.6 0.0 -4,-7 0.3451 - 7.802 ALTERNATIVE:2 ENSMUSG00000027902 Chil6 ENSMUST00000029510 ENSMUSP00000029510 TRANSLATION protein_coding - CCDS17720.1 1 440.0 0.0 7.8 0.1 276.0 0.0 -3,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050931 Sgms2 ENSMUST00000197057 ENSMUSP00000143170 TRANSLATION protein_coding stop - 3 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050931 Sgms2 ENSMUST00000126569 ENSMUSP00000114192 TRANSLATION protein_coding stop - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050931 Sgms2 ENSMUST00000090246 ENSMUSP00000087713 TRANSLATION protein_coding - CCDS17843.1 1 365.0 0.0 5.0 22.0 91.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000050931 Sgms2 ENSMUST00000200431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028072 Ntrk1 ENSMUST00000029712 ENSMUSP00000029712 TRANSLATION protein_coding - CCDS50947.1 1 799.0 19.0 11.78 4.7 405.2 0.0 1,1 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000028086 Fbxw7 ENSMUST00000029727 ENSMUSP00000029727 TRANSLATION protein_coding - CCDS17440.1 1 629.0 0.0 8.0 11.1 233.9 0.0 1,-3 0.9634 1 13.888 MINOR ENSMUSG00000028086 Fbxw7 ENSMUST00000151410 - NO_TRANSLATION retained_intron ENSMUSG00000028086 Fbxw7 ENSMUST00000212597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028086 Fbxw7 ENSMUST00000107678 ENSMUSP00000103305 TRANSLATION protein_coding - CCDS50940.1 5 710.0 0.0 8.0 15.8 233.9 0.0 -4,-2 1.0 2 14.768 MINOR ENSMUSG00000028086 Fbxw7 ENSMUST00000107675 ENSMUSP00000103302 TRANSLATION protein_coding - - 5 589.0 0.0 8.0 22.4 233.9 0.0 -4,-5 0.996 1 16.0 PRINCIPAL:1 ENSMUSG00000028086 Fbxw7 ENSMUST00000107679 ENSMUSP00000103306 TRANSLATION protein_coding - CCDS50940.1 1 710.0 0.0 8.0 15.8 233.9 0.0 -4,-2 1.0 2 14.768 MINOR ENSMUSG00000040562 Gstm2 ENSMUST00000012348 ENSMUSP00000012348 TRANSLATION protein_coding - CCDS17746.1 1 218.0 10.0 6.5 31.9 145.2 0.0 -4,-7 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000040562 Gstm2 ENSMUST00000140420 - NO_TRANSLATION retained_intron ENSMUSG00000040562 Gstm2 ENSMUST00000066530 ENSMUSP00000066675 TRANSLATION protein_coding - - 3 184.0 7.0 5.25 2.8 104.6 0.0 -4,-5 0.0214 11 11.296 MINOR ENSMUSG00000040562 Gstm2 ENSMUST00000150808 - NO_TRANSLATION retained_intron ENSMUSG00000032913 Lrig2 ENSMUST00000200453 - NO_TRANSLATION retained_intron ENSMUSG00000032913 Lrig2 ENSMUST00000198089 - NO_TRANSLATION retained_intron ENSMUSG00000032913 Lrig2 ENSMUST00000196518 - NO_TRANSLATION retained_intron ENSMUSG00000032913 Lrig2 ENSMUST00000198452 - NO_TRANSLATION retained_intron ENSMUSG00000032913 Lrig2 ENSMUST00000199180 ENSMUSP00000143406 TRANSLATION protein_coding start - 2 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032913 Lrig2 ENSMUST00000197018 - NO_TRANSLATION retained_intron ENSMUSG00000032913 Lrig2 ENSMUST00000198332 ENSMUSP00000142540 TRANSLATION protein_coding - CCDS79993.1 1 1047.0 5.0 11.16 0.4 386.5 1.0 1,-3 0.6895 10 13.0 ALTERNATIVE:2 ENSMUSG00000032913 Lrig2 ENSMUST00000046316 ENSMUSP00000035999 TRANSLATION protein_coding - CCDS17701.1 1 1054.0 5.0 11.16 1.1 386.5 1.0 1,-3 1.0 10 14.0 PRINCIPAL:2 ENSMUSG00000032913 Lrig2 ENSMUST00000199070 ENSMUSP00000142373 TRANSLATION protein_coding - - 1 689.0 5.0 3.6 0.0 193.9 1.0 1,-3 0.004 7 5.2 MINOR ENSMUSG00000028036 Ptgfr ENSMUST00000029670 ENSMUSP00000029670 TRANSLATION protein_coding - CCDS17913.1 1 366.0 0.0 0.82 7.9 61.2 6.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000028036 Ptgfr ENSMUST00000128349 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028036 Ptgfr ENSMUST00000106126 ENSMUSP00000101732 TRANSLATION protein_coding - CCDS17913.1 1 366.0 0.0 0.82 7.9 61.2 6.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000046259 Sprr2h ENSMUST00000191886 ENSMUSP00000141424 TRANSLATION protein_coding - - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 1 0.0 MINOR ENSMUSG00000046259 Sprr2h ENSMUST00000059845 ENSMUSP00000053849 TRANSLATION protein_coding - CCDS17553.1 1 108.0 0.0 0.0 0.0 54.8 0.0 -4,-6 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000028029 Aimp1 ENSMUST00000197646 - NO_TRANSLATION retained_intron ENSMUSG00000028029 Aimp1 ENSMUST00000029663 ENSMUSP00000029663 TRANSLATION protein_coding - CCDS38642.1 1 319.0 0.0 5.316 11.5 107.3 0.0 -4,-6 1.0 16 11.0 PRINCIPAL:4 ENSMUSG00000028029 Aimp1 ENSMUST00000200025 - NO_TRANSLATION retained_intron ENSMUSG00000028029 Aimp1 ENSMUST00000197793 ENSMUSP00000142534 TRANSLATION protein_coding stop - 3 115.0 0.0 2.316 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028029 Aimp1 ENSMUST00000199638 - NO_TRANSLATION retained_intron ENSMUSG00000028029 Aimp1 ENSMUST00000198513 ENSMUSP00000142513 TRANSLATION protein_coding - - 3 310.0 0.0 5.316 11.1 107.3 0.0 -4,-5 0.8227 16 10.886 ALTERNATIVE:1 ENSMUSG00000028029 Aimp1 ENSMUST00000196206 ENSMUSP00000142914 TRANSLATION protein_coding stop - 5 80.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028029 Aimp1 ENSMUST00000196963 ENSMUSP00000142365 TRANSLATION protein_coding stop - 5 55.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033386 Frrs1 ENSMUST00000040260 ENSMUSP00000039487 TRANSLATION protein_coding - CCDS17792.1 1 592.0 0.0 2.67 14.7 181.2 7.0 4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000033386 Frrs1 ENSMUST00000195905 ENSMUSP00000143255 TRANSLATION protein_coding - CCDS17792.1 5 592.0 0.0 2.67 14.7 181.2 7.0 4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000033386 Frrs1 ENSMUST00000199626 ENSMUSP00000143546 TRANSLATION nonsense_mediated_decay - - 2 84.0 0.0 0.4 0.0 0.0 0.0 4,-1 0.0017 - -2.0 MINOR ENSMUSG00000033386 Frrs1 ENSMUST00000197323 - NO_TRANSLATION retained_intron ENSMUSG00000033386 Frrs1 ENSMUST00000199584 - NO_TRANSLATION retained_intron ENSMUSG00000033386 Frrs1 ENSMUST00000199030 ENSMUSP00000142793 TRANSLATION protein_coding start - 3 123.0 0.0 0.0 0.0 0.0 3.0 -2,-2 0.0002 - -2.0 MINOR ENSMUSG00000028128 F3 ENSMUST00000029771 ENSMUSP00000029771 TRANSLATION protein_coding - CCDS17805.1 1 294.0 0.0 3.76 0.1 163.0 0.0 3,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000028128 F3 ENSMUST00000197731 - NO_TRANSLATION retained_intron ENSMUSG00000028128 F3 ENSMUST00000199997 ENSMUSP00000143678 TRANSLATION protein_coding start - 5 157.0 0.0 1.0 0.0 40.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028128 F3 ENSMUST00000196746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056270 Prr9 ENSMUST00000070284 ENSMUSP00000068470 TRANSLATION protein_coding - CCDS38508.1 1 116.0 0.0 0.0 10.0 0.0 0.0 -4,-5 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000037797 Adh4 ENSMUST00000013458 ENSMUSP00000013458 TRANSLATION protein_coding - CCDS38653.1 1 377.0 32.0 7.91 15.7 78.0 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000037797 Adh4 ENSMUST00000162260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037797 Adh4 ENSMUST00000161312 ENSMUSP00000124163 TRANSLATION protein_coding stop - 5 216.0 11.0 4.41 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000050174 Nudt6 ENSMUST00000108118 ENSMUSP00000103753 TRANSLATION protein_coding - - 5 245.0 4.0 4.98 1.1 62.2 0.0 1,3 0.0962 3 10.038 MINOR ENSMUSG00000050174 Nudt6 ENSMUST00000099130 ENSMUSP00000096733 TRANSLATION protein_coding - CCDS38418.1 1 312.0 5.0 5.98 2.2 62.0 0.0 1,3 1.0 5 13.436 PRINCIPAL:4 ENSMUSG00000050174 Nudt6 ENSMUST00000138949 ENSMUSP00000118428 TRANSLATION protein_coding start/stop - 2 126.0 1.0 1.9 0.0 0.0 0.0 -2,2 0.0 1 -2.0 MINOR ENSMUSG00000050174 Nudt6 ENSMUST00000108117 ENSMUSP00000103752 TRANSLATION protein_coding - - 5 103.0 0.0 1.4 0.0 0.0 0.0 1,3 0.003 1 0.0 MINOR ENSMUSG00000050174 Nudt6 ENSMUST00000149449 ENSMUSP00000116572 TRANSLATION protein_coding stop - 3 190.0 3.0 3.81 0.0 0.0 0.0 1,3 0.0048 3 -2.0 MINOR ENSMUSG00000050174 Nudt6 ENSMUST00000141438 ENSMUSP00000142588 TRANSLATION protein_coding - - 2 97.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000050174 Nudt6 ENSMUST00000052645 ENSMUSP00000056219 TRANSLATION protein_coding - CCDS71237.1 1 313.0 5.0 5.98 2.2 64.4 0.0 1,3 0.9845 5 13.436 ALTERNATIVE:2 ENSMUSG00000050174 Nudt6 ENSMUST00000198158 ENSMUSP00000142436 TRANSLATION nonsense_mediated_decay start - 2 153.0 1.0 2.7 0.0 0.0 0.0 -2,2 0.0 2 -2.0 MINOR ENSMUSG00000050174 Nudt6 ENSMUST00000146324 ENSMUSP00000142653 TRANSLATION protein_coding - - 1 147.0 4.0 3.08 6.5 51.9 0.0 -4,-5 0.7505 2 6.198 MINOR ENSMUSG00000050174 Nudt6 ENSMUST00000133894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068890 Lce1a2 ENSMUST00000029530 ENSMUSP00000029530 TRANSLATION protein_coding - CCDS17564.1 1 149.0 0.0 0.0 0.0 30.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000008958 Vps72 ENSMUST00000125548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008958 Vps72 ENSMUST00000009102 ENSMUSP00000009102 TRANSLATION protein_coding - CCDS38543.1 1 368.0 0.0 2.0 11.4 227.5 0.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000008958 Vps72 ENSMUST00000152333 - NO_TRANSLATION retained_intron ENSMUSG00000008958 Vps72 ENSMUST00000139296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008958 Vps72 ENSMUST00000136076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027884 Clcc1 ENSMUST00000106613 ENSMUSP00000102224 TRANSLATION protein_coding - CCDS51047.1 1 544.0 0.0 0.0 0.0 1074.7 3.0 4,-1 0.6675 13 2.0 ALTERNATIVE:2 ENSMUSG00000027884 Clcc1 ENSMUST00000130352 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027884 Clcc1 ENSMUST00000156811 - NO_TRANSLATION retained_intron ENSMUSG00000027884 Clcc1 ENSMUST00000029483 ENSMUSP00000029483 TRANSLATION protein_coding - CCDS17766.1 5 539.0 0.0 0.0 0.0 1074.7 3.0 4,-1 1.0 13 2.0 PRINCIPAL:2 ENSMUSG00000027884 Clcc1 ENSMUST00000106609 ENSMUSP00000102220 TRANSLATION protein_coding - CCDS17766.1 1 539.0 0.0 0.0 0.0 1074.7 3.0 4,-1 1.0 13 2.0 PRINCIPAL:2 ENSMUSG00000027884 Clcc1 ENSMUST00000124384 ENSMUSP00000118529 TRANSLATION protein_coding stop - 3 84.0 0.0 0.0 0.0 156.3 0.0 4,-1 0.0024 1 -2.0 MINOR ENSMUSG00000027884 Clcc1 ENSMUST00000125274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027884 Clcc1 ENSMUST00000139016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090314 Kplce ENSMUST00000163439 ENSMUSP00000126921 TRANSLATION protein_coding - CCDS50977.1 2 280.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8854 3 0.0 PRINCIPAL:1 ENSMUSG00000049128 Ivl ENSMUST00000053107 ENSMUSP00000059780 TRANSLATION protein_coding - CCDS17561.1 3 468.0 0.0 0.0 0.0 247.2 0.0 -4,-6 1.0 17 6.0 PRINCIPAL:1 ENSMUSG00000105827 H2bc18 ENSMUST00000177113 ENSMUSP00000135427 TRANSLATION protein_coding - CCDS57243.1 - 126.0 0.0 1.0 11.0 88.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044505 Lingo4 ENSMUST00000050975 ENSMUSP00000058050 TRANSLATION protein_coding - - 1 593.0 0.0 0.6 7.6 195.0 0.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000028138 Adh5 ENSMUST00000162024 - NO_TRANSLATION retained_intron ENSMUSG00000028138 Adh5 ENSMUST00000197643 - NO_TRANSLATION retained_intron ENSMUSG00000028138 Adh5 ENSMUST00000160201 ENSMUSP00000142541 TRANSLATION nonsense_mediated_decay - - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000028138 Adh5 ENSMUST00000198126 ENSMUSP00000143676 TRANSLATION nonsense_mediated_decay - - 5 56.0 0.0 1.16 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028138 Adh5 ENSMUST00000160625 - NO_TRANSLATION retained_intron ENSMUSG00000028138 Adh5 ENSMUST00000159392 - NO_TRANSLATION retained_intron ENSMUSG00000028138 Adh5 ENSMUST00000005964 ENSMUSP00000005964 TRANSLATION protein_coding - CCDS17868.1 1 374.0 31.0 7.16 33.9 85.9 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000028270 Gbp2 ENSMUST00000165774 ENSMUSP00000132435 TRANSLATION protein_coding - CCDS17880.1 1 589.0 15.0 9.93 9.2 796.2 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000028270 Gbp2 ENSMUST00000169572 ENSMUSP00000129039 TRANSLATION nonsense_mediated_decay - - 5 117.0 12.0 2.0 0.0 158.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033014 Trim33 ENSMUST00000198969 - NO_TRANSLATION retained_intron ENSMUSG00000033014 Trim33 ENSMUST00000197365 ENSMUSP00000143117 TRANSLATION protein_coding start - 2 291.0 8.0 4.1 0.0 109.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000033014 Trim33 ENSMUST00000106860 ENSMUSP00000102473 TRANSLATION protein_coding - CCDS38574.1 1 1123.0 23.0 9.15 0.1 176.8 0.0 -4,-5 0.5 15 12.998 ALTERNATIVE:2 ENSMUSG00000033014 Trim33 ENSMUST00000197779 ENSMUSP00000143749 TRANSLATION protein_coding start/stop - 3 193.0 6.0 2.95 0.0 28.7 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000033014 Trim33 ENSMUST00000196678 - NO_TRANSLATION retained_intron ENSMUSG00000033014 Trim33 ENSMUST00000198706 ENSMUSP00000142585 TRANSLATION nonsense_mediated_decay start - 5 402.0 0.0 1.1 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000033014 Trim33 ENSMUST00000029444 ENSMUSP00000029444 TRANSLATION protein_coding - CCDS38573.1 1 1140.0 23.0 9.65 0.1 176.0 0.0 -4,-5 1.0 16 14.0 PRINCIPAL:2 ENSMUSG00000028150 Rorc ENSMUST00000198793 - NO_TRANSLATION retained_intron ENSMUSG00000028150 Rorc ENSMUST00000200009 ENSMUSP00000143610 TRANSLATION protein_coding - - 1 347.0 8.0 3.75 0.0 108.2 0.0 -4,-5 0.0 3 8.406 MINOR ENSMUSG00000028150 Rorc ENSMUST00000029795 ENSMUSP00000029795 TRANSLATION protein_coding - CCDS17591.1 1 516.0 8.0 7.75 8.7 168.1 0.0 -4,-7 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000028150 Rorc ENSMUST00000197040 ENSMUSP00000143763 TRANSLATION protein_coding - CCDS79971.1 1 495.0 8.0 7.75 4.0 168.1 0.0 -4,-5 0.6926 4 19.17 MINOR ENSMUSG00000027859 Ngf ENSMUST00000198168 ENSMUSP00000143428 TRANSLATION protein_coding stop - 2 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027859 Ngf ENSMUST00000198644 ENSMUSP00000142801 TRANSLATION protein_coding - - 5 303.0 0.0 0.8 0.0 169.3 0.0 0,-2 0.0932 5 12.0 MINOR ENSMUSG00000027859 Ngf ENSMUST00000106925 ENSMUSP00000102538 TRANSLATION protein_coding - CCDS17687.1 1 307.0 0.0 0.8 0.0 169.3 0.0 -4,-7 0.2343 5 12.0 MINOR ENSMUSG00000027859 Ngf ENSMUST00000035952 ENSMUSP00000040345 TRANSLATION protein_coding - CCDS51025.1 2 241.0 0.0 0.8 10.9 169.3 0.0 4,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000036362 P2ry13 ENSMUST00000040622 ENSMUSP00000044730 TRANSLATION protein_coding - CCDS17372.1 1 337.0 0.0 0.5 0.4 96.4 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000074480 Mex3a ENSMUST00000172699 ENSMUSP00000134222 TRANSLATION protein_coding - - 2 520.0 8.0 0.4 7.3 130.5 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000027965 Olfm3 ENSMUST00000081752 ENSMUSP00000080448 TRANSLATION protein_coding - CCDS17779.1 1 458.0 0.0 2.18 28.3 440.4 0.0 1,-2 1.0 4 12.0 PRINCIPAL:4 ENSMUSG00000027965 Olfm3 ENSMUST00000149158 ENSMUSP00000121097 TRANSLATION protein_coding stop - 2 211.0 0.0 0.85 0.0 167.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027965 Olfm3 ENSMUST00000051309 ENSMUSP00000060985 TRANSLATION protein_coding - CCDS17780.1 1 478.0 0.0 2.18 20.8 440.4 0.0 -2,-5 0.9024 4 10.9 ALTERNATIVE:1 ENSMUSG00000068917 Clk2 ENSMUST00000148265 ENSMUSP00000122634 TRANSLATION protein_coding stop - 5 249.0 14.0 3.0 0.0 34.1 0.0 -4,-2 0.0004 - -2.0 MINOR ENSMUSG00000068917 Clk2 ENSMUST00000138822 - NO_TRANSLATION retained_intron ENSMUSG00000068917 Clk2 ENSMUST00000139221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068917 Clk2 ENSMUST00000090927 ENSMUSP00000088445 TRANSLATION protein_coding - CCDS50958.1 1 498.0 19.0 9.25 14.0 171.0 0.0 -4,-2 1.0 - 15.502 PRINCIPAL:4 ENSMUSG00000068917 Clk2 ENSMUST00000121931 ENSMUSP00000113861 TRANSLATION protein_coding - - 5 500.0 19.0 9.5 11.8 171.0 0.0 -4,-2 0.8519 - 15.324 ALTERNATIVE:1 ENSMUSG00000068917 Clk2 ENSMUST00000121212 ENSMUSP00000113390 TRANSLATION protein_coding - CCDS17491.1 1 499.0 19.0 9.25 11.8 171.0 0.0 -4,-2 0.9925 - 14.826 ALTERNATIVE:1 ENSMUSG00000068917 Clk2 ENSMUST00000152205 ENSMUSP00000122202 TRANSLATION protein_coding stop - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000068917 Clk2 ENSMUST00000128318 ENSMUSP00000115761 TRANSLATION nonsense_mediated_decay - - 5 136.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000068917 Clk2 ENSMUST00000133323 - NO_TRANSLATION retained_intron ENSMUSG00000068917 Clk2 ENSMUST00000153255 - NO_TRANSLATION retained_intron ENSMUSG00000068917 Clk2 ENSMUST00000132830 - NO_TRANSLATION retained_intron ENSMUSG00000027955 Gask1b ENSMUST00000135021 ENSMUSP00000117199 TRANSLATION protein_coding stop - 3 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0215 - -2.0 MINOR ENSMUSG00000027955 Gask1b ENSMUST00000145992 ENSMUSP00000120603 TRANSLATION protein_coding stop - 3 51.0 0.0 0.0 0.0 83.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027955 Gask1b ENSMUST00000193204 - NO_TRANSLATION retained_intron ENSMUSG00000027955 Gask1b ENSMUST00000029567 ENSMUSP00000029567 TRANSLATION protein_coding - CCDS17422.1 1 517.0 0.0 0.0 6.9 506.6 1.0 -4,-2 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000027955 Gask1b ENSMUST00000118853 ENSMUSP00000114093 TRANSLATION protein_coding - CCDS17422.1 5 517.0 0.0 0.0 6.9 506.6 1.0 -4,-2 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000048540 Nhlh2 ENSMUST00000066187 ENSMUSP00000064355 TRANSLATION protein_coding - CCDS17685.1 1 135.0 0.0 1.0 12.9 64.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048540 Nhlh2 ENSMUST00000198675 ENSMUSP00000143362 TRANSLATION protein_coding - CCDS17685.1 2 135.0 0.0 1.0 12.9 64.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048540 Nhlh2 ENSMUST00000196324 ENSMUSP00000142746 TRANSLATION protein_coding - CCDS17685.1 1 135.0 0.0 1.0 12.9 64.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000090268 Spopfm3 ENSMUST00000159524 ENSMUSP00000125267 TRANSLATION protein_coding - - 5 357.0 0.0 0.64 0.0 101.3 0.0 -4,-5 0.7947 - 12.0 PRINCIPAL:1 ENSMUSG00000096225 Lhx8 ENSMUST00000205251 ENSMUSP00000145485 TRANSLATION protein_coding - - 5 346.0 15.0 4.798 11.9 172.7 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000096225 Lhx8 ENSMUST00000204171 ENSMUSP00000144708 TRANSLATION nonsense_mediated_decay start - 3 68.0 2.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000096225 Lhx8 ENSMUST00000204403 ENSMUSP00000145516 TRANSLATION protein_coding stop - 2 188.0 15.0 2.9 0.0 103.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000096225 Lhx8 ENSMUST00000177846 ENSMUSP00000136047 TRANSLATION protein_coding - CCDS17926.1 1 367.0 15.0 4.798 1.1 172.7 0.0 -4,-5 0.3291 - 18.027 MINOR ENSMUSG00000096225 Lhx8 ENSMUST00000203692 - NO_TRANSLATION retained_intron ENSMUSG00000028132 Tlcd4 ENSMUST00000135818 ENSMUSP00000114755 TRANSLATION protein_coding - - 1 231.0 0.0 5.58 0.0 98.3 7.0 -4,-7 0.0091 3 9.204 MINOR ENSMUSG00000028132 Tlcd4 ENSMUST00000123427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028132 Tlcd4 ENSMUST00000151058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028132 Tlcd4 ENSMUST00000200402 - NO_TRANSLATION retained_intron ENSMUSG00000028132 Tlcd4 ENSMUST00000128909 ENSMUSP00000119468 TRANSLATION protein_coding - CCDS17800.1 1 276.0 0.0 6.58 0.0 111.6 8.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000028132 Tlcd4 ENSMUST00000029777 ENSMUSP00000029777 TRANSLATION protein_coding - CCDS17800.1 1 276.0 0.0 6.58 0.0 111.6 8.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000028132 Tlcd4 ENSMUST00000155309 ENSMUSP00000120821 TRANSLATION protein_coding - CCDS17800.1 1 276.0 0.0 6.58 0.0 111.6 8.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000028132 Tlcd4 ENSMUST00000137234 ENSMUSP00000122001 TRANSLATION protein_coding stop - 3 138.0 0.0 3.5 0.0 39.2 5.0 -4,-7 0.0061 2 -2.0 MINOR ENSMUSG00000049741 Rxfp4 ENSMUST00000063119 ENSMUSP00000058732 TRANSLATION protein_coding - CCDS17482.1 - 414.0 0.0 0.6 0.0 139.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095822 Tdpoz9-ps1 ENSMUST00000193529 ENSMUSP00000141802 TRANSLATION protein_coding - - 1 365.0 0.0 0.64 0.0 98.3 0.0 -4,-5 0.7945 - 12.0 PRINCIPAL:1 ENSMUSG00000027887 Sypl2 ENSMUST00000156371 - NO_TRANSLATION retained_intron ENSMUSG00000027887 Sypl2 ENSMUST00000141387 ENSMUSP00000116756 TRANSLATION protein_coding - CCDS57253.1 1 264.0 0.0 4.375 11.4 131.2 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000023087 Noct ENSMUST00000193018 ENSMUSP00000142216 TRANSLATION protein_coding stop - 2 117.0 0.0 1.75 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000023087 Noct ENSMUST00000144826 ENSMUSP00000141416 TRANSLATION protein_coding - - 1 365.0 0.0 3.0 12.1 84.1 0.0 -4,-2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000023087 Noct ENSMUST00000023849 ENSMUSP00000023849 TRANSLATION protein_coding - CCDS17336.1 1 429.0 0.0 3.0 4.5 84.1 0.0 -4,0 0.5211 7 12.945 MINOR ENSMUSG00000027933 Ints3 ENSMUST00000198776 - NO_TRANSLATION retained_intron ENSMUSG00000027933 Ints3 ENSMUST00000196530 ENSMUSP00000143196 TRANSLATION protein_coding - - 1 1035.0 0.0 17.76 0.0 355.9 0.0 -4,-5 0.2518 21 12.0 MINOR ENSMUSG00000027933 Ints3 ENSMUST00000071488 ENSMUSP00000071422 TRANSLATION protein_coding - CCDS17528.1 1 1041.0 0.0 17.76 4.3 355.9 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000027933 Ints3 ENSMUST00000029542 ENSMUSP00000029542 TRANSLATION protein_coding - CCDS17528.1 1 1041.0 0.0 17.76 4.3 355.9 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000027933 Ints3 ENSMUST00000199992 - NO_TRANSLATION retained_intron ENSMUSG00000027933 Ints3 ENSMUST00000198562 - NO_TRANSLATION retained_intron ENSMUSG00000027933 Ints3 ENSMUST00000199158 - NO_TRANSLATION retained_intron ENSMUSG00000063689 H2ac21 ENSMUST00000073115 ENSMUSP00000072858 TRANSLATION protein_coding - CCDS38553.1 - 130.0 0.0 1.0 18.9 136.8 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028101 Pias3 ENSMUST00000176288 - NO_TRANSLATION retained_intron ENSMUSG00000028101 Pias3 ENSMUST00000162156 ENSMUSP00000135843 TRANSLATION protein_coding start - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028101 Pias3 ENSMUST00000161296 - NO_TRANSLATION retained_intron ENSMUSG00000028101 Pias3 ENSMUST00000162934 ENSMUSP00000125747 TRANSLATION nonsense_mediated_decay - - 1 430.0 4.0 8.79 1.1 196.6 0.0 -4,-2 0.2016 - -2.0 MINOR ENSMUSG00000028101 Pias3 ENSMUST00000107077 ENSMUSP00000102692 TRANSLATION protein_coding - CCDS17645.2 1 593.0 4.0 9.12 0.0 196.6 0.0 -4,-5 0.1258 1 12.0 MINOR ENSMUSG00000028101 Pias3 ENSMUST00000107076 ENSMUSP00000102691 TRANSLATION protein_coding - CCDS38559.1 1 619.0 4.0 8.79 9.4 196.6 0.0 -4,-2 0.9856 1 14.34 ALTERNATIVE:1 ENSMUSG00000028101 Pias3 ENSMUST00000162707 - NO_TRANSLATION retained_intron ENSMUSG00000028101 Pias3 ENSMUST00000176302 ENSMUSP00000134835 TRANSLATION nonsense_mediated_decay - - 5 52.0 0.0 0.79 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000028101 Pias3 ENSMUST00000064900 ENSMUSP00000069259 TRANSLATION protein_coding - CCDS51007.1 1 628.0 4.0 9.12 8.3 196.6 0.0 -4,-5 1.0 1 14.607 PRINCIPAL:4 ENSMUSG00000028101 Pias3 ENSMUST00000162778 ENSMUSP00000125377 TRANSLATION protein_coding stop - 3 90.0 0.0 1.8 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000055030 Sprr2e ENSMUST00000068399 ENSMUSP00000064652 TRANSLATION protein_coding - CCDS57225.1 1 76.0 0.0 0.0 0.0 70.6 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000090066 1110002E22Rik ENSMUST00000184925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090066 1110002E22Rik ENSMUST00000163080 ENSMUSP00000123851 TRANSLATION protein_coding - - 5 1786.0 0.0 0.0 0.0 98.0 0.0 -4,-7 0.9076 25 6.0 PRINCIPAL:1 ENSMUSG00000068854 H2bc21 ENSMUST00000090781 ENSMUSP00000088287 TRANSLATION protein_coding - CCDS17635.1 - 126.0 0.0 1.0 12.5 87.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045934 Mtmr11 ENSMUST00000152763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045934 Mtmr11 ENSMUST00000054356 ENSMUSP00000062341 TRANSLATION protein_coding - CCDS51000.1 1 700.0 0.0 4.5 7.1 270.6 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000045934 Mtmr11 ENSMUST00000147245 - NO_TRANSLATION retained_intron ENSMUSG00000045934 Mtmr11 ENSMUST00000129925 ENSMUSP00000118258 TRANSLATION nonsense_mediated_decay - - 5 273.0 0.0 1.185 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000045934 Mtmr11 ENSMUST00000154955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045934 Mtmr11 ENSMUST00000123520 - NO_TRANSLATION retained_intron ENSMUSG00000045934 Mtmr11 ENSMUST00000196004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000121905 ENSMUSG00000121905 ENSMUST00000249761 ENSMUSP00000159919 TRANSLATION protein_coding - - - 117.0 12.0 2.0 0.0 59.3 0.0 -,- 0.742 - 18.0 PRINCIPAL:1 ENSMUSG00000001415 Smg5 ENSMUST00000193097 - NO_TRANSLATION retained_intron ENSMUSG00000001415 Smg5 ENSMUST00000192009 ENSMUSP00000141650 TRANSLATION nonsense_mediated_decay start - 5 180.0 0.0 1.726 0.0 126.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000001415 Smg5 ENSMUST00000193224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001415 Smg5 ENSMUST00000192057 - NO_TRANSLATION retained_intron ENSMUSG00000001415 Smg5 ENSMUST00000192377 - NO_TRANSLATION retained_intron ENSMUSG00000001415 Smg5 ENSMUST00000194942 - NO_TRANSLATION retained_intron ENSMUSG00000001415 Smg5 ENSMUST00000001451 ENSMUSP00000001451 TRANSLATION protein_coding - CCDS38480.1 1 1017.0 0.0 4.626 8.7 250.4 0.0 -4,-6 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000001415 Smg5 ENSMUST00000193007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001415 Smg5 ENSMUST00000194359 - NO_TRANSLATION retained_intron ENSMUSG00000091405 H4c14 ENSMUST00000171473 ENSMUSP00000129930 TRANSLATION protein_coding - CCDS51002.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000074207 Adh1 ENSMUST00000161799 - NO_TRANSLATION retained_intron ENSMUSG00000074207 Adh1 ENSMUST00000162032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074207 Adh1 ENSMUST00000004232 ENSMUSP00000004232 TRANSLATION protein_coding - CCDS17867.1 1 375.0 33.0 7.49 36.9 88.9 0.0 -4,-6 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000074207 Adh1 ENSMUST00000159159 ENSMUSP00000124688 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.66 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000047819 Tigd4 ENSMUST00000062623 ENSMUSP00000052320 TRANSLATION protein_coding - CCDS17439.1 - 513.0 0.0 0.0 8.9 235.1 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000068922 Msto1 ENSMUST00000126245 ENSMUSP00000115645 TRANSLATION protein_coding - CCDS17485.1 1 556.0 0.0 0.0 0.4 190.2 0.0 -3,-6 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000068922 Msto1 ENSMUST00000137243 - NO_TRANSLATION retained_intron ENSMUSG00000068922 Msto1 ENSMUST00000147828 - NO_TRANSLATION retained_intron ENSMUSG00000068922 Msto1 ENSMUST00000107494 ENSMUSP00000103118 TRANSLATION protein_coding - - 1 586.0 0.0 0.0 0.0 85.8 0.0 -4,-7 0.0114 11 0.0 MINOR ENSMUSG00000068922 Msto1 ENSMUST00000128988 - NO_TRANSLATION retained_intron ENSMUSG00000093931 Amy2a3 ENSMUST00000179314 ENSMUSP00000136894 TRANSLATION protein_coding - CCDS51055.1 1 508.0 44.0 10.0 29.4 118.1 0.0 4,-1 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000027784 Ppm1l ENSMUST00000193662 - NO_TRANSLATION retained_intron ENSMUSG00000027784 Ppm1l ENSMUST00000134037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027784 Ppm1l ENSMUST00000128637 - NO_TRANSLATION retained_intron ENSMUSG00000027784 Ppm1l ENSMUST00000029355 ENSMUSP00000029355 TRANSLATION protein_coding - CCDS17405.1 1 360.0 11.0 3.5 32.1 202.8 0.0 -3,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000027752 Exosc8 ENSMUST00000198780 - NO_TRANSLATION retained_intron ENSMUSG00000027752 Exosc8 ENSMUST00000142377 - NO_TRANSLATION retained_intron ENSMUSG00000027752 Exosc8 ENSMUST00000154787 ENSMUSP00000115876 TRANSLATION nonsense_mediated_decay start - 3 114.0 0.0 3.33 0.0 56.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000027752 Exosc8 ENSMUST00000125632 - NO_TRANSLATION retained_intron ENSMUSG00000027752 Exosc8 ENSMUST00000029316 ENSMUSP00000029316 TRANSLATION protein_coding - CCDS17352.1 1 276.0 0.0 8.24 24.0 137.8 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000027752 Exosc8 ENSMUST00000153224 ENSMUSP00000118780 TRANSLATION protein_coding stop - 3 130.0 0.0 3.99 0.0 52.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000027752 Exosc8 ENSMUST00000127112 - NO_TRANSLATION retained_intron ENSMUSG00000027752 Exosc8 ENSMUST00000140935 - NO_TRANSLATION retained_intron ENSMUSG00000027752 Exosc8 ENSMUST00000150923 - NO_TRANSLATION retained_intron ENSMUSG00000027752 Exosc8 ENSMUST00000135935 - NO_TRANSLATION retained_intron ENSMUSG00000027752 Exosc8 ENSMUST00000134892 - NO_TRANSLATION retained_intron ENSMUSG00000092049 Vmn2r4 ENSMUST00000233020 - NO_TRANSLATION retained_intron ENSMUSG00000092049 Vmn2r4 ENSMUST00000233824 ENSMUSP00000156687 TRANSLATION nonsense_mediated_decay - - - 595.0 0.0 2.905 0.0 327.7 0.0 3,-2 0.0033 - -2.0 MINOR ENSMUSG00000092049 Vmn2r4 ENSMUST00000175724 ENSMUSP00000135228 TRANSLATION protein_coding - - 5 913.0 0.0 3.14 0.1 503.0 0.0 3,-2 0.9254 - 12.0 PRINCIPAL:1 ENSMUSG00000028039 Efna3 ENSMUST00000200436 ENSMUSP00000143539 TRANSLATION protein_coding - - 5 204.0 0.0 2.15 0.4 137.7 0.0 2,-2 0.1329 - 8.0 ALTERNATIVE:2 ENSMUSG00000028039 Efna3 ENSMUST00000139439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028039 Efna3 ENSMUST00000029673 ENSMUSP00000029673 TRANSLATION protein_coding - CCDS38488.1 1 230.0 0.0 2.15 0.4 137.7 0.0 2,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000027718 Il21 ENSMUST00000029273 ENSMUSP00000029273 TRANSLATION protein_coding - CCDS17317.1 1 146.0 0.0 2.98 2.2 0.0 0.0 1,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000027718 Il21 ENSMUST00000161015 ENSMUSP00000124668 TRANSLATION protein_coding - CCDS71236.1 1 162.0 0.0 2.65 0.0 0.0 0.0 1,-2 0.1795 - 5.334 MINOR ENSMUSG00000027718 Il21 ENSMUST00000196943 - NO_TRANSLATION retained_intron ENSMUSG00000060798 Intu ENSMUST00000204176 ENSMUSP00000144877 TRANSLATION protein_coding start/stop - 5 258.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0219 1 -2.0 MINOR ENSMUSG00000060798 Intu ENSMUST00000061590 ENSMUSP00000054313 TRANSLATION protein_coding - - 2 229.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.029 - 0.0 MINOR ENSMUSG00000060798 Intu ENSMUST00000091186 ENSMUSP00000088725 TRANSLATION protein_coding - CCDS84619.1 1 942.0 0.0 0.455 4.7 0.0 0.0 -4,-6 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000000794 Kcnn3 ENSMUST00000124584 - NO_TRANSLATION retained_intron ENSMUSG00000000794 Kcnn3 ENSMUST00000000811 ENSMUSP00000000811 TRANSLATION protein_coding - CCDS38495.1 1 732.0 0.0 6.75 1.4 342.0 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000038712 Mindy1 ENSMUST00000137743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038712 Mindy1 ENSMUST00000135249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038712 Mindy1 ENSMUST00000135264 - NO_TRANSLATION retained_intron ENSMUSG00000038712 Mindy1 ENSMUST00000143498 ENSMUSP00000142400 TRANSLATION protein_coding stop - 2 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038712 Mindy1 ENSMUST00000168223 ENSMUSP00000127839 TRANSLATION protein_coding - CCDS17611.1 5 459.0 0.0 6.1 5.0 131.8 0.0 -4,-5 0.882 5 13.365 MINOR ENSMUSG00000038712 Mindy1 ENSMUST00000107187 ENSMUSP00000102805 TRANSLATION protein_coding - CCDS57233.1 1 468.0 0.0 6.1 9.8 131.8 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000038712 Mindy1 ENSMUST00000147963 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038712 Mindy1 ENSMUST00000149568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038712 Mindy1 ENSMUST00000133762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038712 Mindy1 ENSMUST00000039537 ENSMUSP00000043910 TRANSLATION protein_coding - CCDS17611.1 1 459.0 0.0 6.1 5.0 131.8 0.0 -4,-5 0.882 5 13.365 MINOR ENSMUSG00000038712 Mindy1 ENSMUST00000152640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038712 Mindy1 ENSMUST00000153928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028255 Clca1 ENSMUST00000195901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028255 Clca1 ENSMUST00000029919 ENSMUSP00000029919 TRANSLATION protein_coding - CCDS17889.1 1 913.0 5.0 7.2 0.0 498.2 0.0 4,-1 1.0 28 17.0 PRINCIPAL:1 ENSMUSG00000028255 Clca1 ENSMUST00000198832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027978 Prss12 ENSMUST00000029603 ENSMUSP00000029603 TRANSLATION protein_coding - CCDS17817.1 1 761.0 6.0 5.32 1.5 572.6 0.0 4,-2 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000068740 Celsr2 ENSMUST00000126349 - NO_TRANSLATION retained_intron ENSMUSG00000068740 Celsr2 ENSMUST00000133216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068740 Celsr2 ENSMUST00000147251 ENSMUSP00000122329 TRANSLATION protein_coding start - 1 900.0 0.0 5.197 0.0 422.3 0.0 -4,-5 0.0059 10 -2.0 MINOR ENSMUSG00000068740 Celsr2 ENSMUST00000130941 - NO_TRANSLATION retained_intron ENSMUSG00000068740 Celsr2 ENSMUST00000090558 ENSMUSP00000088046 TRANSLATION protein_coding - CCDS17759.1 1 2919.0 84.0 8.704 0.1 1216.7 0.0 4,-1 1.0 34 18.0 PRINCIPAL:1 ENSMUSG00000068740 Celsr2 ENSMUST00000126935 - NO_TRANSLATION retained_intron ENSMUSG00000068740 Celsr2 ENSMUST00000147565 - NO_TRANSLATION retained_intron ENSMUSG00000038374 Rbm8a ENSMUST00000199022 - NO_TRANSLATION retained_intron ENSMUSG00000038374 Rbm8a ENSMUST00000196456 ENSMUSP00000143190 TRANSLATION protein_coding - CCDS51005.1 1 174.0 0.0 3.841 13.8 66.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000038374 Rbm8a ENSMUST00000048915 ENSMUSP00000044548 TRANSLATION protein_coding - CCDS79983.1 1 173.0 0.0 3.775 8.4 66.4 0.0 -4,-5 0.9081 2 14.18 MINOR ENSMUSG00000038374 Rbm8a ENSMUST00000198027 ENSMUSP00000143346 TRANSLATION protein_coding - - 3 171.0 0.0 3.316 0.0 66.4 0.0 -4,-5 0.0528 3 10.95 MINOR ENSMUSG00000038374 Rbm8a ENSMUST00000200647 ENSMUSP00000142699 TRANSLATION protein_coding - - 2 125.0 0.0 2.95 0.0 66.4 0.0 -4,-5 0.0007 2 10.218 MINOR ENSMUSG00000038374 Rbm8a ENSMUST00000199628 - NO_TRANSLATION retained_intron ENSMUSG00000028173 Wls ENSMUST00000197328 - NO_TRANSLATION retained_intron ENSMUSG00000028173 Wls ENSMUST00000198878 ENSMUSP00000143475 TRANSLATION protein_coding - CCDS38684.1 1 541.0 0.0 10.5 36.9 315.5 8.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028173 Wls ENSMUST00000068952 ENSMUSP00000067898 TRANSLATION protein_coding - CCDS38684.1 1 541.0 0.0 10.5 36.9 315.5 8.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028173 Wls ENSMUST00000200571 - NO_TRANSLATION retained_intron ENSMUSG00000028173 Wls ENSMUST00000196782 - NO_TRANSLATION retained_intron ENSMUSG00000028173 Wls ENSMUST00000196276 - NO_TRANSLATION retained_intron ENSMUSG00000028173 Wls ENSMUST00000200191 ENSMUSP00000142774 TRANSLATION nonsense_mediated_decay - - 1 37.0 0.0 1.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042626 Shc1 ENSMUST00000146306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042626 Shc1 ENSMUST00000191485 ENSMUSP00000140336 TRANSLATION protein_coding - CCDS17508.1 1 469.0 0.0 7.995 9.0 224.8 0.0 -4,-7 0.8525 12 10.697 ALTERNATIVE:1 ENSMUSG00000042626 Shc1 ENSMUST00000039110 ENSMUSP00000035361 TRANSLATION protein_coding - CCDS17508.1 1 469.0 0.0 7.995 9.0 224.8 0.0 -4,-7 0.8525 12 10.697 ALTERNATIVE:1 ENSMUSG00000042626 Shc1 ENSMUST00000125036 ENSMUSP00000115509 TRANSLATION protein_coding stop - 3 172.0 0.0 4.698 0.0 152.6 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000042626 Shc1 ENSMUST00000094378 ENSMUSP00000091940 TRANSLATION protein_coding - CCDS50962.1 1 579.0 0.0 7.995 9.9 224.8 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:3 ENSMUSG00000042626 Shc1 ENSMUST00000154791 ENSMUSP00000123635 TRANSLATION protein_coding stop - 3 118.0 0.0 3.33 0.0 43.4 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000042626 Shc1 ENSMUST00000137793 ENSMUSP00000117190 TRANSLATION protein_coding stop - 3 280.0 0.0 5.995 0.0 161.5 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000042626 Shc1 ENSMUST00000153334 - NO_TRANSLATION retained_intron ENSMUSG00000042626 Shc1 ENSMUST00000107417 ENSMUSP00000103040 TRANSLATION protein_coding - - 1 424.0 0.0 6.995 1.0 224.8 0.0 -4,-7 0.1355 9 6.002 MINOR ENSMUSG00000042626 Shc1 ENSMUST00000128238 ENSMUSP00000119293 TRANSLATION protein_coding stop - 3 262.0 0.0 5.495 0.0 62.8 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000039756 Dnttip2 ENSMUST00000199449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039756 Dnttip2 ENSMUST00000035776 ENSMUSP00000045043 TRANSLATION protein_coding - CCDS17809.1 1 758.0 0.0 3.6 0.0 127.4 0.0 -4,-1 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000039756 Dnttip2 ENSMUST00000199627 - NO_TRANSLATION retained_intron ENSMUSG00000039756 Dnttip2 ENSMUST00000197215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039756 Dnttip2 ENSMUST00000196338 - NO_TRANSLATION retained_intron ENSMUSG00000042212 Sprr2d ENSMUST00000047477 ENSMUSP00000039821 TRANSLATION protein_coding - CCDS38510.1 1 85.0 0.0 0.0 0.0 55.3 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000004896 Mettl25b ENSMUST00000159091 - NO_TRANSLATION retained_intron ENSMUSG00000004896 Mettl25b ENSMUST00000005016 ENSMUSP00000005016 TRANSLATION protein_coding - CCDS17458.1 1 475.0 11.0 3.996 12.5 104.6 0.0 -4,-2 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000004896 Mettl25b ENSMUST00000161471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004896 Mettl25b ENSMUST00000161014 - NO_TRANSLATION retained_intron ENSMUSG00000004896 Mettl25b ENSMUST00000160648 ENSMUSP00000131552 TRANSLATION nonsense_mediated_decay - - 1 108.0 0.0 0.9 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000004896 Mettl25b ENSMUST00000164439 ENSMUSP00000125786 TRANSLATION nonsense_mediated_decay - - 3 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004896 Mettl25b ENSMUST00000159831 - NO_TRANSLATION retained_intron ENSMUSG00000004896 Mettl25b ENSMUST00000160143 ENSMUSP00000124113 TRANSLATION protein_coding - - 5 277.0 11.0 2.896 5.3 51.8 0.0 -4,-2 0.146 1 13.752 MINOR ENSMUSG00000004896 Mettl25b ENSMUST00000160074 ENSMUSP00000125365 TRANSLATION protein_coding - - 5 411.0 11.0 2.796 1.5 104.6 0.0 -4,-5 0.1493 2 15.729 MINOR ENSMUSG00000004896 Mettl25b ENSMUST00000160068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004896 Mettl25b ENSMUST00000159967 - NO_TRANSLATION retained_intron ENSMUSG00000004896 Mettl25b ENSMUST00000168070 - NO_TRANSLATION retained_intron ENSMUSG00000042244 Pglyrp3 ENSMUST00000047660 ENSMUSP00000035737 TRANSLATION protein_coding - CCDS17545.1 1 347.0 0.0 3.5 0.0 101.9 0.0 1,-3 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000028071 Sh2d2a ENSMUST00000194639 - NO_TRANSLATION retained_intron ENSMUSG00000028071 Sh2d2a ENSMUST00000029709 ENSMUSP00000029709 TRANSLATION protein_coding - CCDS17455.1 1 366.0 0.0 3.2 0.0 56.9 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000028071 Sh2d2a ENSMUST00000107581 ENSMUSP00000103207 TRANSLATION protein_coding - CCDS38476.1 1 374.0 0.0 3.2 0.1 56.9 0.0 -4,-5 0.4013 1 8.0 ALTERNATIVE:2 ENSMUSG00000028017 Egf ENSMUST00000198093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028017 Egf ENSMUST00000197713 ENSMUSP00000143108 TRANSLATION nonsense_mediated_decay - - 1 254.0 0.0 3.84 0.0 139.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000028017 Egf ENSMUST00000197079 ENSMUSP00000143075 TRANSLATION protein_coding - CCDS80020.1 1 716.0 13.0 8.99 0.0 240.4 2.0 -4,-5 0.0336 17 5.112 MINOR ENSMUSG00000028017 Egf ENSMUST00000029653 ENSMUSP00000029653 TRANSLATION protein_coding - CCDS17833.1 1 1217.0 17.0 12.69 0.0 310.8 2.0 3,-2 1.0 30 18.0 PRINCIPAL:1 ENSMUSG00000028017 Egf ENSMUST00000199209 - NO_TRANSLATION retained_intron ENSMUSG00000028017 Egf ENSMUST00000198816 - NO_TRANSLATION retained_intron ENSMUSG00000028017 Egf ENSMUST00000199272 - NO_TRANSLATION retained_intron ENSMUSG00000028017 Egf ENSMUST00000199615 ENSMUSP00000142497 TRANSLATION protein_coding - - 1 675.0 7.0 8.19 0.0 204.7 2.0 -4,-5 0.0031 16 0.0 MINOR ENSMUSG00000028017 Egf ENSMUST00000197250 - NO_TRANSLATION retained_intron ENSMUSG00000027868 Tbx15 ENSMUST00000150756 ENSMUSP00000142358 TRANSLATION protein_coding stop - 3 141.0 0.0 3.5 0.0 192.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000027868 Tbx15 ENSMUST00000151606 ENSMUSP00000143417 TRANSLATION protein_coding stop - 3 51.0 0.0 1.5 0.0 62.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027868 Tbx15 ENSMUST00000029462 ENSMUSP00000029462 TRANSLATION protein_coding - CCDS17673.1 1 602.0 0.0 5.25 22.1 261.6 0.0 -4,-1 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000028156 Eif4e ENSMUST00000198252 - NO_TRANSLATION retained_intron ENSMUSG00000028156 Eif4e ENSMUST00000029803 ENSMUSP00000029803 TRANSLATION protein_coding - CCDS38654.1 5 217.0 0.0 5.99 35.4 191.1 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000028156 Eif4e ENSMUST00000200100 ENSMUSP00000143772 TRANSLATION protein_coding - - 3 185.0 0.0 4.99 4.2 140.2 0.0 -4,-5 0.033 6 7.32 MINOR ENSMUSG00000028156 Eif4e ENSMUST00000196990 ENSMUSP00000143104 TRANSLATION protein_coding - CCDS84679.1 3 132.0 0.0 3.33 0.7 128.4 0.0 -4,-5 0.0279 5 2.916 MINOR ENSMUSG00000028156 Eif4e ENSMUST00000200239 ENSMUSP00000143481 TRANSLATION protein_coding - - 5 79.0 0.0 2.33 0.0 36.2 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000028156 Eif4e ENSMUST00000200020 ENSMUSP00000143690 TRANSLATION protein_coding stop - 1 183.0 0.0 4.99 0.0 181.9 0.0 -4,-5 0.0036 6 -2.0 MINOR ENSMUSG00000034349 Smc4 ENSMUST00000042901 ENSMUSP00000047872 TRANSLATION protein_coding - CCDS17401.1 1 1286.0 7.0 16.754 7.3 298.0 0.0 -4,-6 1.0 35 20.0 PRINCIPAL:1 ENSMUSG00000034349 Smc4 ENSMUST00000195525 ENSMUSP00000141779 TRANSLATION nonsense_mediated_decay - - 5 56.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034349 Smc4 ENSMUST00000149174 ENSMUSP00000142192 TRANSLATION nonsense_mediated_decay start - 3 109.0 0.0 2.0 0.0 51.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034349 Smc4 ENSMUST00000136502 ENSMUSP00000115033 TRANSLATION protein_coding stop - 1 337.0 7.0 5.7 0.0 135.9 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000034349 Smc4 ENSMUST00000148385 ENSMUSP00000123350 TRANSLATION nonsense_mediated_decay - - 1 46.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034349 Smc4 ENSMUST00000156354 - NO_TRANSLATION retained_intron ENSMUSG00000034349 Smc4 ENSMUST00000128134 - NO_TRANSLATION retained_intron ENSMUSG00000034349 Smc4 ENSMUST00000124983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034349 Smc4 ENSMUST00000128118 - NO_TRANSLATION retained_intron ENSMUSG00000034349 Smc4 ENSMUST00000194693 - NO_TRANSLATION retained_intron ENSMUSG00000034349 Smc4 ENSMUST00000107803 ENSMUSP00000103433 TRANSLATION protein_coding - - 5 1261.0 7.0 16.754 1.0 298.0 0.0 -4,-6 0.342 35 18.0 MINOR ENSMUSG00000038486 Sv2a ENSMUST00000133665 - NO_TRANSLATION retained_intron ENSMUSG00000038486 Sv2a ENSMUST00000196912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038486 Sv2a ENSMUST00000035371 ENSMUSP00000037576 TRANSLATION protein_coding - CCDS17631.1 1 742.0 0.0 3.998 12.5 141.0 0.0 -4,-5 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000027962 Vcam1 ENSMUST00000196309 ENSMUSP00000143260 TRANSLATION protein_coding stop - 3 237.0 0.0 2.33 0.0 136.7 0.0 3,-2 0.0 9 -2.0 MINOR ENSMUSG00000027962 Vcam1 ENSMUST00000196449 ENSMUSP00000142876 TRANSLATION protein_coding - - 1 345.0 0.0 3.3175 0.0 179.1 0.0 4,-1 0.0 9 2.31 MINOR ENSMUSG00000027962 Vcam1 ENSMUST00000029574 ENSMUSP00000029574 TRANSLATION protein_coding - CCDS17785.1 1 739.0 0.0 5.1635 6.9 374.7 0.0 4,-1 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000027962 Vcam1 ENSMUST00000197031 - NO_TRANSLATION retained_intron ENSMUSG00000028133 Rwdd3 ENSMUST00000039761 ENSMUSP00000040826 TRANSLATION protein_coding - CCDS17798.1 1 267.0 0.0 2.25 15.4 47.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028133 Rwdd3 ENSMUST00000170781 ENSMUSP00000129262 TRANSLATION protein_coding - - 5 200.0 0.0 2.25 6.9 47.7 0.0 -4,-5 0.5254 1 13.64 MINOR ENSMUSG00000028133 Rwdd3 ENSMUST00000164925 ENSMUSP00000133036 TRANSLATION protein_coding stop - 1 140.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028133 Rwdd3 ENSMUST00000106465 - NO_TRANSLATION retained_intron ENSMUSG00000028133 Rwdd3 ENSMUST00000164968 - NO_TRANSLATION retained_intron ENSMUSG00000028133 Rwdd3 ENSMUST00000164573 ENSMUSP00000130734 TRANSLATION protein_coding start - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028133 Rwdd3 ENSMUST00000106466 ENSMUSP00000102074 TRANSLATION protein_coding - CCDS17798.1 1 267.0 0.0 2.25 15.4 47.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028133 Rwdd3 ENSMUST00000106467 ENSMUSP00000102075 TRANSLATION protein_coding - CCDS17799.2 1 339.0 0.0 2.25 0.0 38.8 0.0 -4,-5 0.0993 1 10.878 MINOR ENSMUSG00000028133 Rwdd3 ENSMUST00000098650 - NO_TRANSLATION retained_intron ENSMUSG00000038975 Rabggtb ENSMUST00000200209 ENSMUSP00000143452 TRANSLATION nonsense_mediated_decay - - 1 153.0 0.0 3.33 0.0 56.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038975 Rabggtb ENSMUST00000197147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038975 Rabggtb ENSMUST00000198094 ENSMUSP00000143701 TRANSLATION nonsense_mediated_decay start - 5 152.0 0.0 3.33 0.0 56.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000038975 Rabggtb ENSMUST00000196565 ENSMUSP00000143258 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000038975 Rabggtb ENSMUST00000089950 ENSMUSP00000087396 TRANSLATION protein_coding - CCDS51097.1 5 331.0 3.0 8.16 29.5 239.8 0.0 -4,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000038975 Rabggtb ENSMUST00000200631 ENSMUSP00000142999 TRANSLATION nonsense_mediated_decay - - 1 162.0 0.0 2.165 0.0 33.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000038975 Rabggtb ENSMUST00000196266 ENSMUSP00000142682 TRANSLATION nonsense_mediated_decay - - 1 153.0 0.0 3.33 0.0 56.7 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000038975 Rabggtb ENSMUST00000196956 ENSMUSP00000143458 TRANSLATION nonsense_mediated_decay - - 1 205.0 0.0 4.83 0.0 130.7 0.0 -4,-6 0.0004 5 -2.0 MINOR ENSMUSG00000038975 Rabggtb ENSMUST00000197438 ENSMUSP00000143551 TRANSLATION nonsense_mediated_decay - - 2 132.0 0.0 2.0 0.0 33.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000038975 Rabggtb ENSMUST00000197829 ENSMUSP00000143567 TRANSLATION nonsense_mediated_decay start - 5 80.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000038975 Rabggtb ENSMUST00000167111 ENSMUSP00000129481 TRANSLATION protein_coding - CCDS17923.1 1 339.0 3.0 8.16 2.2 239.8 0.0 -4,-6 0.4294 6 15.168 MINOR ENSMUSG00000038975 Rabggtb ENSMUST00000198350 ENSMUSP00000142402 TRANSLATION nonsense_mediated_decay start - 5 149.0 0.0 3.33 0.0 56.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000034109 Golim4 ENSMUST00000038563 ENSMUSP00000048997 TRANSLATION protein_coding - CCDS17416.1 1 655.0 0.0 3.2 0.1 0.0 1.0 -2,-5 0.2641 11 4.2 MINOR ENSMUSG00000034109 Golim4 ENSMUST00000125405 - NO_TRANSLATION retained_intron ENSMUSG00000034109 Golim4 ENSMUST00000134444 - NO_TRANSLATION retained_intron ENSMUSG00000034109 Golim4 ENSMUST00000134219 - NO_TRANSLATION retained_intron ENSMUSG00000034109 Golim4 ENSMUST00000117242 ENSMUSP00000114006 TRANSLATION protein_coding - CCDS71251.1 1 683.0 0.0 4.1 0.1 0.0 1.0 -2,-5 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000034109 Golim4 ENSMUST00000150904 ENSMUSP00000119501 TRANSLATION protein_coding start/stop - 3 144.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0078 1 -2.0 MINOR ENSMUSG00000034109 Golim4 ENSMUST00000131987 - NO_TRANSLATION retained_intron ENSMUSG00000034109 Golim4 ENSMUST00000192433 - NO_TRANSLATION retained_intron ENSMUSG00000028136 Snx27 ENSMUST00000198902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028136 Snx27 ENSMUST00000200642 ENSMUSP00000143066 TRANSLATION protein_coding - - 5 435.0 0.0 4.6575 0.0 112.7 0.0 -4,-7 0.0 12 5.442 MINOR ENSMUSG00000028136 Snx27 ENSMUST00000029783 ENSMUSP00000029783 TRANSLATION protein_coding - CCDS38538.1 1 526.0 0.0 6.2575 3.8 168.7 0.0 -4,-5 0.6149 17 12.966 MINOR ENSMUSG00000028136 Snx27 ENSMUST00000199462 ENSMUSP00000143378 TRANSLATION nonsense_mediated_decay - - 5 63.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028136 Snx27 ENSMUST00000198426 ENSMUSP00000143525 TRANSLATION nonsense_mediated_decay start - 3 110.0 0.0 2.08 0.0 70.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028136 Snx27 ENSMUST00000196251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028136 Snx27 ENSMUST00000196675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028136 Snx27 ENSMUST00000107283 ENSMUSP00000102904 TRANSLATION protein_coding - CCDS38537.1 1 539.0 0.0 6.2575 9.7 168.7 0.0 -4,-5 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000027981 Rnpc3 ENSMUST00000123232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027981 Rnpc3 ENSMUST00000132220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027981 Rnpc3 ENSMUST00000106536 ENSMUSP00000102146 TRANSLATION protein_coding - CCDS17777.1 1 514.0 0.0 4.55 12.2 64.0 0.0 -4,-7 1.0 8 11.0 PRINCIPAL:4 ENSMUSG00000027981 Rnpc3 ENSMUST00000106535 ENSMUSP00000102145 TRANSLATION protein_coding - CCDS71308.1 1 513.0 0.0 4.45 12.2 64.0 0.0 -4,-7 0.9914 8 10.802 ALTERNATIVE:1 ENSMUSG00000027981 Rnpc3 ENSMUST00000153853 ENSMUSP00000115492 TRANSLATION protein_coding start - 2 463.0 0.0 4.35 0.0 34.3 0.0 -4,-2 0.0071 7 -2.0 MINOR ENSMUSG00000027981 Rnpc3 ENSMUST00000135712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027981 Rnpc3 ENSMUST00000127068 - NO_TRANSLATION retained_intron ENSMUSG00000027981 Rnpc3 ENSMUST00000092154 ENSMUSP00000089792 TRANSLATION protein_coding - CCDS17777.1 1 514.0 0.0 4.55 12.2 64.0 0.0 -4,-7 1.0 8 11.0 PRINCIPAL:4 ENSMUSG00000118506 Cfap141 ENSMUST00000238911 ENSMUSP00000158884 TRANSLATION protein_coding - - - 101.0 0.0 2.83 6.8 108.2 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000036632 Alg5 ENSMUST00000141191 ENSMUSP00000118818 TRANSLATION nonsense_mediated_decay - - 1 84.0 4.0 1.45 0.0 0.0 0.0 1,-4 0.0025 4 -2.0 MINOR ENSMUSG00000036632 Alg5 ENSMUST00000155273 ENSMUSP00000119260 TRANSLATION nonsense_mediated_decay - - 1 84.0 4.0 1.45 0.0 0.0 0.0 1,-4 0.0025 - -2.0 MINOR ENSMUSG00000036632 Alg5 ENSMUST00000044567 ENSMUSP00000035879 TRANSLATION protein_coding - CCDS17353.1 1 324.0 12.0 8.03 5.1 85.4 0.0 1,-4 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000036632 Alg5 ENSMUST00000143387 - NO_TRANSLATION retained_intron ENSMUSG00000049940 Pgrmc2 ENSMUST00000058578 ENSMUSP00000056643 TRANSLATION protein_coding - CCDS50899.1 1 217.0 0.0 2.4 2.5 51.9 0.0 -4,-5 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000049940 Pgrmc2 ENSMUST00000124636 - NO_TRANSLATION retained_intron ENSMUSG00000027806 Tsc22d2 ENSMUST00000196049 ENSMUSP00000143214 TRANSLATION nonsense_mediated_decay start - 5 81.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000027806 Tsc22d2 ENSMUST00000199164 ENSMUSP00000143364 TRANSLATION protein_coding - CCDS84624.1 1 745.0 0.0 1.5 0.1 90.7 0.0 -4,-2 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000027806 Tsc22d2 ENSMUST00000099090 ENSMUSP00000096688 TRANSLATION protein_coding - CCDS38435.1 3 769.0 0.0 1.5 0.1 90.7 0.0 -4,-2 0.5103 5 8.0 ALTERNATIVE:2 ENSMUSG00000027806 Tsc22d2 ENSMUST00000199784 - NO_TRANSLATION retained_intron ENSMUSG00000028060 Khdc4 ENSMUST00000197300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028060 Khdc4 ENSMUST00000200364 - NO_TRANSLATION retained_intron ENSMUSG00000028060 Khdc4 ENSMUST00000200438 - NO_TRANSLATION retained_intron ENSMUSG00000028060 Khdc4 ENSMUST00000198042 ENSMUSP00000142773 TRANSLATION nonsense_mediated_decay - - 5 487.0 0.0 2.5 0.0 0.0 0.0 -4,-7 0.0369 7 -2.0 MINOR ENSMUSG00000028060 Khdc4 ENSMUST00000198078 ENSMUSP00000142760 TRANSLATION nonsense_mediated_decay - - 5 432.0 3.0 2.5 0.0 0.0 0.0 -4,-7 0.0311 6 -2.0 MINOR ENSMUSG00000028060 Khdc4 ENSMUST00000200622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028060 Khdc4 ENSMUST00000198721 - NO_TRANSLATION retained_intron ENSMUSG00000028060 Khdc4 ENSMUST00000029696 ENSMUSP00000029696 TRANSLATION protein_coding - CCDS17483.1 1 612.0 0.0 2.5 11.4 0.0 0.0 -4,-7 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000028060 Khdc4 ENSMUST00000199684 ENSMUSP00000142353 TRANSLATION nonsense_mediated_decay - - 2 487.0 0.0 2.5 0.0 0.0 0.0 -4,-7 0.0369 - -2.0 MINOR ENSMUSG00000028060 Khdc4 ENSMUST00000200588 - NO_TRANSLATION retained_intron ENSMUSG00000056054 S100a8 ENSMUST00000069927 ENSMUSP00000064385 TRANSLATION protein_coding - CCDS38507.1 1 89.0 6.0 2.0 5.1 55.9 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000056054 S100a8 ENSMUST00000198156 - NO_TRANSLATION retained_intron ENSMUSG00000000562 Adora3 ENSMUST00000197613 - NO_TRANSLATION retained_intron ENSMUSG00000000562 Adora3 ENSMUST00000000574 ENSMUSP00000000574 TRANSLATION protein_coding - CCDS17712.1 1 319.0 0.0 2.75 0.0 159.5 8.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000000562 Adora3 ENSMUST00000164730 ENSMUSP00000126710 TRANSLATION protein_coding,RT - CCDS51036.1 1 173.0 0.0 1.0 3.2 65.9 4.0 -4,-1 0.6656 - -2.0 MINOR ENSMUSG00000058005 Tdpoz3 ENSMUST00000081780 ENSMUSP00000080472 TRANSLATION protein_coding - CCDS17586.1 - 365.0 0.0 0.64 0.1 95.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033752 Mnd1 ENSMUST00000047368 ENSMUSP00000048262 TRANSLATION protein_coding - CCDS38464.1 1 205.0 0.0 5.75 28.7 241.3 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000015852 Fcrl2 ENSMUST00000090986 ENSMUSP00000088508 TRANSLATION protein_coding - CCDS38471.1 1 509.0 0.0 4.7 0.1 222.2 0.0 4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000015852 Fcrl2 ENSMUST00000146512 ENSMUSP00000115780 TRANSLATION protein_coding stop - 3 176.0 0.0 1.81 0.0 32.5 0.0 4,-1 0.0 3 -2.0 MINOR ENSMUSG00000037400 Atp11b ENSMUST00000199892 ENSMUSP00000142724 TRANSLATION protein_coding start/stop - 3 259.0 0.0 6.0 0.0 40.1 2.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000037400 Atp11b ENSMUST00000196409 - NO_TRANSLATION retained_intron ENSMUSG00000037400 Atp11b ENSMUST00000198599 ENSMUSP00000142676 TRANSLATION protein_coding start - 5 967.0 3.0 17.104 0.0 306.7 15.0 -4,-5 0.0102 11 -2.0 MINOR ENSMUSG00000037400 Atp11b ENSMUST00000211902 ENSMUSP00000148402 TRANSLATION nonsense_mediated_decay start - 5 112.0 0.0 0.6 0.0 0.0 3.0 -3,-5 0.0002 - -2.0 MINOR ENSMUSG00000037400 Atp11b ENSMUST00000196965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037400 Atp11b ENSMUST00000197764 ENSMUSP00000142988 TRANSLATION protein_coding start - 3 124.0 0.0 0.6 0.0 0.0 3.0 -3,-5 0.0002 2 -2.0 MINOR ENSMUSG00000037400 Atp11b ENSMUST00000200445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037400 Atp11b ENSMUST00000196700 - NO_TRANSLATION retained_intron ENSMUSG00000037400 Atp11b ENSMUST00000197003 - NO_TRANSLATION retained_intron ENSMUSG00000037400 Atp11b ENSMUST00000029257 ENSMUSP00000029257 TRANSLATION protein_coding - CCDS38414.1 1 1175.0 3.0 21.434 7.3 417.2 17.0 -4,-7 1.0 17 17.0 PRINCIPAL:1 ENSMUSG00000037400 Atp11b ENSMUST00000200351 - NO_TRANSLATION retained_intron ENSMUSG00000027952 Pmvk ENSMUST00000107410 ENSMUSP00000103033 TRANSLATION protein_coding - - 5 158.0 7.0 4.25 0.0 159.0 0.0 -4,-2 0.0108 8 16.002 MINOR ENSMUSG00000027952 Pmvk ENSMUST00000184515 ENSMUSP00000139116 TRANSLATION protein_coding - CCDS71270.1 1 171.0 0.0 4.25 0.0 123.0 0.0 -4,-7 0.0057 7 7.842 MINOR ENSMUSG00000027952 Pmvk ENSMUST00000029564 ENSMUSP00000029564 TRANSLATION protein_coding - CCDS17511.1 1 192.0 7.0 5.25 10.0 159.0 0.0 -4,-2 1.0 8 20.952 PRINCIPAL:1 ENSMUSG00000027952 Pmvk ENSMUST00000198440 ENSMUSP00000143154 TRANSLATION protein_coding - CCDS79953.1 1 117.0 0.0 2.75 13.2 58.1 0.0 -4,-5 0.6843 3 5.002 MINOR ENSMUSG00000044165 Bcl2l15 ENSMUST00000106822 ENSMUSP00000102435 TRANSLATION protein_coding - CCDS51028.1 1 165.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.2485 3 0.0 MINOR ENSMUSG00000044165 Bcl2l15 ENSMUST00000196184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044165 Bcl2l15 ENSMUST00000199772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044165 Bcl2l15 ENSMUST00000062945 ENSMUSP00000052210 TRANSLATION protein_coding - CCDS51027.1 1 167.0 0.0 0.0 6.6 0.0 0.0 -4,-5 1.0 3 2.0 PRINCIPAL:1 ENSMUSG00000028266 Lmo4 ENSMUST00000121796 ENSMUSP00000113513 TRANSLATION protein_coding - CCDS51085.1 1 165.0 16.0 3.75 34.9 116.1 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000028266 Lmo4 ENSMUST00000120539 ENSMUSP00000113840 TRANSLATION protein_coding - CCDS51085.1 1 165.0 16.0 3.75 34.9 116.1 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000028266 Lmo4 ENSMUST00000148128 - NO_TRANSLATION retained_intron ENSMUSG00000028266 Lmo4 ENSMUST00000197652 ENSMUSP00000142551 TRANSLATION protein_coding stop - 5 132.0 14.0 2.75 0.0 104.9 0.0 -4,-7 0.0036 3 -2.0 MINOR ENSMUSG00000028266 Lmo4 ENSMUST00000196264 ENSMUSP00000143035 TRANSLATION protein_coding - - 5 85.0 8.0 1.0 0.0 56.6 0.0 -4,-7 0.0 1 3.594 MINOR ENSMUSG00000028266 Lmo4 ENSMUST00000124891 - NO_TRANSLATION retained_intron ENSMUSG00000028266 Lmo4 ENSMUST00000134961 - NO_TRANSLATION retained_intron ENSMUSG00000028266 Lmo4 ENSMUST00000121112 ENSMUSP00000113865 TRANSLATION protein_coding - CCDS51085.1 1 165.0 16.0 3.75 34.9 116.1 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000027797 Dclk1 ENSMUST00000196745 ENSMUSP00000143659 TRANSLATION protein_coding - - 1 739.0 18.0 11.8 19.1 394.8 0.0 -4,-5 1.0 24 21.622 PRINCIPAL:1 ENSMUSG00000027797 Dclk1 ENSMUST00000199585 ENSMUSP00000142698 TRANSLATION protein_coding - CCDS79908.1 1 56.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.0365 2 0.02 MINOR ENSMUSG00000027797 Dclk1 ENSMUST00000167204 ENSMUSP00000129334 TRANSLATION protein_coding - CCDS50909.1 1 363.0 0.0 3.3 19.9 142.4 0.0 -4,-5 0.8021 14 3.836 MINOR ENSMUSG00000027797 Dclk1 ENSMUST00000198437 ENSMUSP00000143016 TRANSLATION protein_coding - CCDS79909.1 1 449.0 18.0 8.5 0.4 253.3 0.0 -4,-5 0.0068 12 6.0 MINOR ENSMUSG00000027797 Dclk1 ENSMUST00000198412 ENSMUSP00000142637 TRANSLATION protein_coding - - 5 432.0 18.0 8.5 20.7 252.4 0.0 -4,-5 0.6118 12 10.0 MINOR ENSMUSG00000027797 Dclk1 ENSMUST00000200348 ENSMUSP00000143672 TRANSLATION protein_coding stop - - 111.0 0.0 1.0 0.0 40.6 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000027797 Dclk1 ENSMUST00000200352 ENSMUSP00000142840 TRANSLATION protein_coding - - 2 452.0 18.0 8.0 0.0 253.3 0.0 -4,-5 0.0174 11 6.0 MINOR ENSMUSG00000027797 Dclk1 ENSMUST00000198757 - NO_TRANSLATION retained_intron ENSMUSG00000027797 Dclk1 ENSMUST00000197870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027797 Dclk1 ENSMUST00000070418 ENSMUSP00000070292 TRANSLATION protein_coding - CCDS50910.1 5 422.0 18.0 8.0 8.8 253.3 0.0 -4,-5 0.2599 12 7.584 MINOR ENSMUSG00000027797 Dclk1 ENSMUST00000198821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000027797 Dclk1 ENSMUST00000198154 - NO_TRANSLATION retained_intron ENSMUSG00000027797 Dclk1 ENSMUST00000199702 ENSMUSP00000143507 TRANSLATION protein_coding - - 1 421.0 18.0 8.0 11.8 253.3 0.0 -4,-5 0.3592 12 8.192 MINOR ENSMUSG00000027797 Dclk1 ENSMUST00000054237 ENSMUSP00000050034 TRANSLATION protein_coding - CCDS17359.1 1 756.0 18.0 11.8 0.4 395.7 0.0 -4,-5 0.2416 24 18.0 MINOR ENSMUSG00000027797 Dclk1 ENSMUST00000199169 ENSMUSP00000143563 TRANSLATION protein_coding - - 2 382.0 18.0 8.0 0.0 253.3 0.0 -4,-5 0.0 11 6.0 MINOR ENSMUSG00000028175 Depdc1a ENSMUST00000029825 ENSMUSP00000029825 TRANSLATION protein_coding - CCDS17936.1 1 804.0 0.0 2.625 0.1 59.1 0.0 -4,-7 0.1686 - 9.708 MINOR ENSMUSG00000028175 Depdc1a ENSMUST00000120272 ENSMUSP00000113216 TRANSLATION protein_coding - CCDS51105.1 1 806.0 0.0 2.625 0.0 59.1 0.0 -4,-7 0.1436 - 9.708 MINOR ENSMUSG00000028175 Depdc1a ENSMUST00000106041 ENSMUSP00000101656 TRANSLATION protein_coding - CCDS51106.1 1 529.0 0.0 2.625 10.9 95.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000015943 Bola1 ENSMUST00000177442 ENSMUSP00000134765 TRANSLATION protein_coding - CCDS17632.1 3 137.0 0.0 1.0 9.6 101.4 0.0 -4,0 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000015943 Bola1 ENSMUST00000016087 ENSMUSP00000016087 TRANSLATION protein_coding - CCDS17632.1 1 137.0 0.0 1.0 9.6 101.4 0.0 -4,0 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000015943 Bola1 ENSMUST00000107099 ENSMUSP00000102716 TRANSLATION protein_coding - CCDS17632.1 2 137.0 0.0 1.0 9.6 101.4 0.0 -4,0 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000070385 Ampd1 ENSMUST00000199407 - NO_TRANSLATION retained_intron ENSMUSG00000070385 Ampd1 ENSMUST00000177250 ENSMUSP00000134772 TRANSLATION protein_coding start - 5 247.0 3.0 5.75 0.0 268.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000070385 Ampd1 ENSMUST00000176440 ENSMUSP00000135737 TRANSLATION protein_coding stop - 5 178.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000070385 Ampd1 ENSMUST00000155034 ENSMUSP00000143129 TRANSLATION protein_coding - - 1 676.0 5.0 11.5 0.0 379.5 0.0 -4,-5 0.0034 18 8.96 MINOR ENSMUSG00000070385 Ampd1 ENSMUST00000090715 ENSMUSP00000088217 TRANSLATION protein_coding - CCDS38571.1 1 745.0 5.0 13.5 20.1 446.8 0.0 -4,-5 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000027824 Vmn2r1 ENSMUST00000029406 ENSMUSP00000029406 TRANSLATION protein_coding - CCDS17384.1 1 912.0 0.0 3.14 3.4 539.1 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000040213 Kyat3 ENSMUST00000044392 ENSMUSP00000041675 TRANSLATION protein_coding - CCDS17881.1 1 420.0 13.0 10.58 18.8 176.6 0.0 -4,-5 1.0 17 15.502 PRINCIPAL:4 ENSMUSG00000040213 Kyat3 ENSMUST00000199519 ENSMUSP00000143531 TRANSLATION protein_coding stop - 3 194.0 7.0 4.58 0.0 81.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000040213 Kyat3 ENSMUST00000137623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040213 Kyat3 ENSMUST00000196928 - NO_TRANSLATION retained_intron ENSMUSG00000040213 Kyat3 ENSMUST00000198957 - NO_TRANSLATION retained_intron ENSMUSG00000040213 Kyat3 ENSMUST00000106218 ENSMUSP00000101825 TRANSLATION protein_coding - CCDS80040.1 1 455.0 13.0 10.83 12.1 176.6 0.0 -4,0 0.8432 17 14.496 ALTERNATIVE:1 ENSMUSG00000040213 Kyat3 ENSMUST00000129775 ENSMUSP00000121687 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000040213 Kyat3 ENSMUST00000128096 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028081 Rps3a1 ENSMUST00000029722 ENSMUSP00000029722 TRANSLATION protein_coding - CCDS17446.1 1 264.0 0.0 4.875 36.9 359.9 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000004891 Nes ENSMUST00000159830 - NO_TRANSLATION retained_intron ENSMUSG00000004891 Nes ENSMUST00000090973 ENSMUSP00000088493 TRANSLATION protein_coding - CCDS17461.1 1 1864.0 0.0 0.7 0.0 96.5 0.0 -4,-5 0.9505 24 8.0 ALTERNATIVE:2 ENSMUSG00000004891 Nes ENSMUST00000160694 ENSMUSP00000125571 TRANSLATION protein_coding - - 1 1820.0 0.0 0.7 0.0 96.5 0.0 -4,-5 1.0 24 8.0 PRINCIPAL:4 ENSMUSG00000094163 Tdpoz5 ENSMUST00000098879 ENSMUSP00000096478 TRANSLATION protein_coding - CCDS17588.1 - 340.0 0.0 0.64 0.0 98.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037152 Ndufc1 ENSMUST00000193279 ENSMUSP00000141933 TRANSLATION protein_coding - CCDS38426.1 3 76.0 0.0 1.5 12.5 105.0 1.0 -3,0 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037152 Ndufc1 ENSMUST00000145572 - NO_TRANSLATION retained_intron ENSMUSG00000037152 Ndufc1 ENSMUST00000135602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037152 Ndufc1 ENSMUST00000038108 ENSMUSP00000038463 TRANSLATION protein_coding - CCDS38426.1 1 76.0 0.0 1.5 12.5 105.0 1.0 -3,0 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000027919 Lce1g ENSMUST00000029527 ENSMUSP00000029527 TRANSLATION protein_coding - CCDS17569.1 1 139.0 0.0 0.0 0.0 36.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028185 Dnase2b ENSMUST00000029836 ENSMUSP00000029836 TRANSLATION protein_coding - CCDS17904.1 1 354.0 0.0 5.35 5.2 371.4 0.0 4,-1 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000028185 Dnase2b ENSMUST00000200633 ENSMUSP00000142872 TRANSLATION protein_coding - CCDS17904.1 1 354.0 0.0 5.35 5.2 371.4 0.0 4,-1 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000028028 Alpk1 ENSMUST00000162859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028028 Alpk1 ENSMUST00000029662 ENSMUSP00000029662 TRANSLATION protein_coding - CCDS51067.1 5 1231.0 4.0 9.368 0.1 140.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028028 Alpk1 ENSMUST00000161239 - NO_TRANSLATION retained_intron ENSMUSG00000028028 Alpk1 ENSMUST00000159720 ENSMUSP00000123885 TRANSLATION protein_coding start/stop - 3 183.0 0.0 4.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028028 Alpk1 ENSMUST00000198955 ENSMUSP00000143223 TRANSLATION protein_coding - CCDS51067.1 5 1231.0 4.0 9.368 0.1 140.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028028 Alpk1 ENSMUST00000160586 - NO_TRANSLATION retained_intron ENSMUSG00000027857 Tshb ENSMUST00000170856 ENSMUSP00000127165 TRANSLATION protein_coding - CCDS17689.1 5 138.0 0.0 2.0 13.6 115.5 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027857 Tshb ENSMUST00000172026 ENSMUSP00000128440 TRANSLATION protein_coding - CCDS17689.1 5 138.0 0.0 2.0 13.6 115.5 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027857 Tshb ENSMUST00000197322 ENSMUSP00000142670 TRANSLATION protein_coding - CCDS17689.1 1 138.0 0.0 2.0 13.6 115.5 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027857 Tshb ENSMUST00000196958 - NO_TRANSLATION retained_intron ENSMUSG00000027857 Tshb ENSMUST00000200041 ENSMUSP00000142782 TRANSLATION protein_coding - CCDS17689.1 5 138.0 0.0 2.0 13.6 115.5 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000027857 Tshb ENSMUST00000029450 ENSMUSP00000029450 TRANSLATION protein_coding - CCDS17689.1 5 138.0 0.0 2.0 13.6 115.5 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028015 Ctso ENSMUST00000192067 - NO_TRANSLATION retained_intron ENSMUSG00000028015 Ctso ENSMUST00000155144 - NO_TRANSLATION retained_intron ENSMUSG00000028015 Ctso ENSMUST00000143307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028015 Ctso ENSMUST00000029649 ENSMUSP00000029649 TRANSLATION protein_coding - CCDS17426.1 1 312.0 4.0 6.73 0.1 201.0 0.0 0,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000028108 Ecm1 ENSMUST00000137912 ENSMUSP00000122243 TRANSLATION protein_coding stop - 3 140.0 0.0 0.0 0.0 94.0 0.0 3,-2 0.0026 3 -2.0 MINOR ENSMUSG00000028108 Ecm1 ENSMUST00000144958 - NO_TRANSLATION retained_intron ENSMUSG00000028108 Ecm1 ENSMUST00000131376 ENSMUSP00000114659 TRANSLATION protein_coding stop - 3 295.0 0.0 1.45 0.0 421.4 0.0 3,-2 0.0652 6 -2.0 MINOR ENSMUSG00000028108 Ecm1 ENSMUST00000128885 ENSMUSP00000120820 TRANSLATION protein_coding stop - 5 251.0 0.0 0.7 0.0 387.9 0.0 3,-2 0.0027 5 -2.0 MINOR ENSMUSG00000028108 Ecm1 ENSMUST00000155815 - NO_TRANSLATION retained_intron ENSMUSG00000028108 Ecm1 ENSMUST00000117507 ENSMUSP00000112665 TRANSLATION protein_coding - CCDS17619.1 1 559.0 0.0 1.3 1.0 1062.3 0.0 3,-2 0.7801 16 7.382 ALTERNATIVE:2 ENSMUSG00000028108 Ecm1 ENSMUST00000123143 ENSMUSP00000120300 TRANSLATION protein_coding stop - 5 266.0 0.0 1.3 0.0 399.3 0.0 3,-2 0.002 4 -2.0 MINOR ENSMUSG00000028108 Ecm1 ENSMUST00000029753 ENSMUSP00000029753 TRANSLATION protein_coding - CCDS57237.1 1 558.0 0.0 1.3 2.1 1053.2 0.0 3,-2 1.0 17 8.382 PRINCIPAL:3 ENSMUSG00000028108 Ecm1 ENSMUST00000153026 ENSMUSP00000114747 TRANSLATION protein_coding stop - 5 230.0 0.0 0.0 0.0 271.4 0.0 3,-2 0.0039 4 -2.0 MINOR ENSMUSG00000028108 Ecm1 ENSMUST00000147217 ENSMUSP00000115524 TRANSLATION protein_coding stop - 2 80.0 0.0 0.0 0.0 91.7 0.0 3,-2 0.0026 1 -2.0 MINOR ENSMUSG00000027699 Ect2 ENSMUST00000108296 - NO_TRANSLATION retained_intron ENSMUSG00000027699 Ect2 ENSMUST00000124727 - NO_TRANSLATION retained_intron ENSMUSG00000027699 Ect2 ENSMUST00000108298 ENSMUSP00000103933 TRANSLATION protein_coding - CCDS50875.1 1 882.0 0.0 16.42 18.9 248.6 0.0 -4,-5 0.9738 9 11.828 ALTERNATIVE:1 ENSMUSG00000027699 Ect2 ENSMUST00000177055 ENSMUSP00000134744 TRANSLATION protein_coding stop - 3 181.0 0.0 3.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027699 Ect2 ENSMUST00000108300 ENSMUSP00000103935 TRANSLATION protein_coding - CCDS17270.2 1 913.0 0.0 16.42 19.7 248.6 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:4 ENSMUSG00000027699 Ect2 ENSMUST00000176780 ENSMUSP00000134786 TRANSLATION protein_coding stop - 3 174.0 0.0 3.58 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027699 Ect2 ENSMUST00000150061 ENSMUSP00000135617 TRANSLATION nonsense_mediated_decay start - 3 80.0 4.0 0.33 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000027699 Ect2 ENSMUST00000176242 ENSMUSP00000135740 TRANSLATION protein_coding - CCDS50875.1 5 882.0 0.0 16.42 18.9 248.6 0.0 -4,-5 0.9738 9 11.828 ALTERNATIVE:1 ENSMUSG00000027699 Ect2 ENSMUST00000175857 ENSMUSP00000135208 TRANSLATION protein_coding stop - 5 167.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000027699 Ect2 ENSMUST00000184113 ENSMUSP00000139341 TRANSLATION nonsense_mediated_decay - - 2 133.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000027699 Ect2 ENSMUST00000196926 - NO_TRANSLATION retained_intron ENSMUSG00000027699 Ect2 ENSMUST00000176908 - NO_TRANSLATION retained_intron ENSMUSG00000027699 Ect2 ENSMUST00000176535 ENSMUSP00000135630 TRANSLATION protein_coding stop - 2 188.0 0.0 3.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034098 Fstl5 ENSMUST00000160261 ENSMUSP00000125393 TRANSLATION protein_coding - CCDS38455.1 1 847.0 0.0 4.083 17.2 119.0 0.0 4,-1 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000034098 Fstl5 ENSMUST00000191664 - NO_TRANSLATION retained_intron ENSMUSG00000034098 Fstl5 ENSMUST00000162471 ENSMUSP00000125688 TRANSLATION protein_coding start/stop - 3 201.0 0.0 0.264 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000034098 Fstl5 ENSMUST00000038364 ENSMUSP00000038506 TRANSLATION protein_coding - CCDS38455.1 1 847.0 0.0 4.083 17.2 119.0 0.0 4,-1 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000034098 Fstl5 ENSMUST00000159686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095896 Ifna14 ENSMUST00000102808 ENSMUSP00000099872 TRANSLATION protein_coding - CCDS18320.1 - 189.0 3.0 1.0 5.3 203.6 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000066090 Insl5 ENSMUST00000106869 ENSMUSP00000102482 TRANSLATION protein_coding - CCDS71431.1 1 145.0 0.0 0.6 0.0 31.0 0.0 2,-2 0.2459 3 12.0 MINOR ENSMUSG00000066090 Insl5 ENSMUST00000084382 ENSMUSP00000081416 TRANSLATION protein_coding - CCDS18406.1 1 135.0 0.0 0.6 7.2 31.0 0.0 4,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000049225 Pdp1 ENSMUST00000095144 ENSMUSP00000092766 TRANSLATION protein_coding - CCDS51121.1 5 563.0 9.0 0.5 13.1 122.9 0.0 -4,-1 0.9046 14 14.916 ALTERNATIVE:1 ENSMUSG00000049225 Pdp1 ENSMUST00000108297 ENSMUSP00000103932 TRANSLATION protein_coding - CCDS38694.1 1 538.0 9.0 0.5 17.6 122.9 0.0 -4,-7 1.0 14 16.0 PRINCIPAL:4 ENSMUSG00000049225 Pdp1 ENSMUST00000108299 ENSMUSP00000103934 TRANSLATION protein_coding - CCDS51121.1 2 563.0 9.0 0.5 13.1 122.9 0.0 -4,-1 0.9046 14 14.916 ALTERNATIVE:1 ENSMUSG00000049225 Pdp1 ENSMUST00000108301 ENSMUSP00000103936 TRANSLATION protein_coding - - 1 597.0 9.0 0.5 4.4 122.9 0.0 -4,-2 0.2741 14 12.82 MINOR ENSMUSG00000049225 Pdp1 ENSMUST00000108302 ENSMUSP00000103937 TRANSLATION protein_coding - CCDS71345.1 3 578.0 9.0 0.5 0.4 122.9 0.0 -4,-1 0.2841 14 12.0 MINOR ENSMUSG00000028452 Vcp ENSMUST00000154541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028452 Vcp ENSMUST00000139843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028452 Vcp ENSMUST00000154423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028452 Vcp ENSMUST00000030164 ENSMUSP00000030164 TRANSLATION protein_coding - CCDS18086.1 1 806.0 22.0 15.0 34.9 462.1 0.0 -4,-5 1.0 45 22.0 PRINCIPAL:1 ENSMUSG00000028452 Vcp ENSMUST00000148182 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029033 Acap3 ENSMUST00000137726 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029033 Acap3 ENSMUST00000131372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029033 Acap3 ENSMUST00000145654 - NO_TRANSLATION retained_intron ENSMUSG00000029033 Acap3 ENSMUST00000140902 - NO_TRANSLATION retained_intron ENSMUSG00000029033 Acap3 ENSMUST00000126582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029033 Acap3 ENSMUST00000105584 ENSMUSP00000101209 TRANSLATION protein_coding - CCDS38997.1 1 833.0 4.0 15.1 9.9 521.3 0.0 -4,-5 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000029033 Acap3 ENSMUST00000131168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029033 Acap3 ENSMUST00000079031 ENSMUSP00000078040 TRANSLATION protein_coding - - 5 829.0 4.0 15.1 5.7 521.3 0.0 -4,-5 0.6703 10 17.584 MINOR ENSMUSG00000029033 Acap3 ENSMUST00000140855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051593 Or13c25 ENSMUST00000107667 ENSMUSP00000103294 TRANSLATION protein_coding - CCDS18185.1 3 319.0 0.0 0.8 12.5 183.7 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051593 Or13c25 ENSMUST00000217085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051593 Or13c25 ENSMUST00000213989 ENSMUSP00000149339 TRANSLATION protein_coding - CCDS18185.1 5 319.0 0.0 0.8 12.5 183.7 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051593 Or13c25 ENSMUST00000051600 ENSMUSP00000055721 TRANSLATION protein_coding - CCDS18185.1 - 319.0 0.0 0.8 12.5 183.7 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073775 Kti12 ENSMUST00000102738 ENSMUSP00000099799 TRANSLATION protein_coding - CCDS18458.1 - 351.0 13.0 0.0 7.8 357.5 0.0 -3,-1 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000044556 Tex38 ENSMUST00000106521 ENSMUSP00000102131 TRANSLATION protein_coding - CCDS51274.1 1 201.0 0.0 0.4 1.2 355.5 0.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000070972 Dnajc25 ENSMUST00000150309 ENSMUSP00000123172 TRANSLATION nonsense_mediated_decay - - 5 159.0 0.0 0.8 0.0 55.0 0.0 0,-3 0.0085 1 -2.0 MINOR ENSMUSG00000070972 Dnajc25 ENSMUST00000148366 ENSMUSP00000116171 TRANSLATION protein_coding stop - 1 79.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000070972 Dnajc25 ENSMUST00000153467 ENSMUSP00000114320 TRANSLATION nonsense_mediated_decay - - 5 152.0 0.0 0.8 0.0 56.0 0.0 0,-3 0.0085 1 -2.0 MINOR ENSMUSG00000070972 Dnajc25 ENSMUST00000152199 ENSMUSP00000118048 TRANSLATION protein_coding - - 5 238.0 0.0 4.0 1.2 0.0 1.0 -4,-6 0.0217 2 3.825 MINOR ENSMUSG00000070972 Dnajc25 ENSMUST00000095070 ENSMUSP00000092680 TRANSLATION protein_coding - CCDS18216.2 1 357.0 0.0 5.13 8.0 69.1 1.0 0,-3 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000070908 Gm13288 ENSMUST00000094977 ENSMUSP00000092585 TRANSLATION protein_coding - CCDS57286.1 - 182.0 0.0 0.4 0.0 94.6 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059423 Zfp933 ENSMUST00000135798 ENSMUSP00000118300 TRANSLATION protein_coding stop - 1 98.0 3.0 1.34 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059423 Zfp933 ENSMUST00000105718 ENSMUSP00000101343 TRANSLATION protein_coding - CCDS38963.1 1 468.0 51.0 2.34 0.1 328.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028687 Mutyh ENSMUST00000124857 - NO_TRANSLATION retained_intron ENSMUSG00000028687 Mutyh ENSMUST00000102699 ENSMUSP00000099760 TRANSLATION protein_coding - CCDS18518.1 1 515.0 17.0 9.982 1.4 129.4 0.0 -4,-1 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000028687 Mutyh ENSMUST00000155346 ENSMUSP00000122777 TRANSLATION nonsense_mediated_decay - - 1 136.0 0.0 1.8 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000028687 Mutyh ENSMUST00000135449 - NO_TRANSLATION retained_intron ENSMUSG00000028687 Mutyh ENSMUST00000138056 - NO_TRANSLATION retained_intron ENSMUSG00000028687 Mutyh ENSMUST00000130359 ENSMUSP00000122549 TRANSLATION protein_coding stop - 5 68.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000028687 Mutyh ENSMUST00000140680 - NO_TRANSLATION retained_intron ENSMUSG00000041153 Osgin2 ENSMUST00000134048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041153 Osgin2 ENSMUST00000037198 ENSMUSP00000047473 TRANSLATION protein_coding - CCDS17987.1 1 550.0 25.0 0.0 9.1 0.0 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000041153 Osgin2 ENSMUST00000148819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041153 Osgin2 ENSMUST00000149891 ENSMUSP00000121807 TRANSLATION protein_coding stop - 3 185.0 7.0 0.0 0.1 0.0 0.0 -4,-6 0.0457 - -2.0 MINOR ENSMUSG00000041153 Osgin2 ENSMUST00000124770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078511 Pramel16 ENSMUST00000105766 ENSMUSP00000101392 TRANSLATION protein_coding - - 5 481.0 0.0 2.1 0.4 0.0 0.0 -4,-7 0.6587 - 6.0 PRINCIPAL:1 ENSMUSG00000028763 Hspg2 ENSMUST00000171332 ENSMUSP00000131316 TRANSLATION protein_coding - CCDS51333.1 5 4383.0 20.0 33.7205 0.4 2086.4 0.0 2,-2 1.0 124 14.0 PRINCIPAL:2 ENSMUSG00000028763 Hspg2 ENSMUST00000238544 ENSMUSP00000158633 TRANSLATION protein_coding start/stop - - 239.0 0.0 0.6485 0.0 40.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028763 Hspg2 ENSMUST00000030547 ENSMUSP00000030547 TRANSLATION protein_coding - - 5 4375.0 20.0 33.5225 0.0 2086.4 0.0 2,-2 0.7215 123 13.604 ALTERNATIVE:2 ENSMUSG00000028763 Hspg2 ENSMUST00000155648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078234 Klhdc7a ENSMUST00000105031 ENSMUSP00000100648 TRANSLATION protein_coding - CCDS38935.1 - 773.0 0.0 0.0 0.4 55.9 0.0 -4,-6 1.0 17 6.0 PRINCIPAL:1 ENSMUSG00000078773 Rad54b ENSMUST00000108306 ENSMUSP00000103942 TRANSLATION protein_coding - - 3 93.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000078773 Rad54b ENSMUST00000070755 ENSMUSP00000066977 TRANSLATION protein_coding - CCDS17970.1 1 886.0 8.0 7.102 0.1 255.8 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078773 Rad54b ENSMUST00000095145 ENSMUSP00000092767 TRANSLATION protein_coding - CCDS57262.1 1 98.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0456 - 0.0 MINOR ENSMUSG00000078773 Rad54b ENSMUST00000144499 - NO_TRANSLATION retained_intron ENSMUSG00000078773 Rad54b ENSMUST00000179731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078773 Rad54b ENSMUST00000178725 ENSMUSP00000136561 TRANSLATION nonsense_mediated_decay start - 5 156.0 8.0 1.772 0.0 63.5 0.0 -4,-2 0.0007 - -2.0 MINOR ENSMUSG00000078773 Rad54b ENSMUST00000179498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070687 Htr1d ENSMUST00000117699 ENSMUSP00000112840 TRANSLATION protein_coding - CCDS18806.1 1 374.0 0.0 0.5 21.4 249.7 3.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000070687 Htr1d ENSMUST00000121571 ENSMUSP00000112402 TRANSLATION protein_coding - CCDS18806.1 1 374.0 0.0 0.5 21.4 249.7 3.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000070687 Htr1d ENSMUST00000088677 ENSMUSP00000086052 TRANSLATION protein_coding - CCDS18806.1 1 374.0 0.0 0.5 21.4 249.7 3.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000070687 Htr1d ENSMUST00000133818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039611 Pgap4 ENSMUST00000150664 ENSMUSP00000115100 TRANSLATION protein_coding stop - 2 133.0 0.0 0.0 0.0 0.0 3.0 -3,-1 0.0336 - -2.0 MINOR ENSMUSG00000039611 Pgap4 ENSMUST00000042750 ENSMUSP00000040885 TRANSLATION protein_coding - CCDS18177.1 1 403.0 0.0 0.0 10.3 0.0 5.0 -3,-1 1.0 5 3.0 PRINCIPAL:1 ENSMUSG00000039611 Pgap4 ENSMUST00000151542 ENSMUSP00000117861 TRANSLATION protein_coding stop - 5 38.0 0.0 0.0 0.0 0.0 1.0 -3,-1 0.0242 - -2.0 MINOR ENSMUSG00000028821 Syf2 ENSMUST00000156334 - NO_TRANSLATION retained_intron ENSMUSG00000028821 Syf2 ENSMUST00000144037 - NO_TRANSLATION retained_intron ENSMUSG00000028821 Syf2 ENSMUST00000030622 ENSMUSP00000030622 TRANSLATION protein_coding - CCDS18781.1 1 242.0 0.0 5.6 17.2 191.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000100549 Ifna11 ENSMUST00000170428 ENSMUSP00000127921 TRANSLATION protein_coding - CCDS38810.1 - 190.0 3.0 1.0 6.5 197.9 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000046667 Rbm12b1 ENSMUST00000069128 ENSMUSP00000064195 TRANSLATION protein_coding - CCDS17976.1 1 836.0 0.0 0.0 0.1 81.3 0.0 -4,-7 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000046667 Rbm12b1 ENSMUST00000146416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046667 Rbm12b1 ENSMUST00000050069 ENSMUSP00000053555 TRANSLATION protein_coding - CCDS17976.1 1 836.0 0.0 0.0 0.1 81.3 0.0 -4,-7 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000046667 Rbm12b1 ENSMUST00000138008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000115072 Vmn1r2 ENSMUST00000226198 ENSMUSP00000154142 TRANSLATION protein_coding - CCDS51107.1 - 306.0 0.0 0.2 0.4 108.4 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000115072 Vmn1r2 ENSMUST00000105160 ENSMUSP00000100791 TRANSLATION protein_coding - CCDS51107.1 - 306.0 0.0 0.2 0.4 108.4 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035692 Isg15 ENSMUST00000085425 ENSMUSP00000082548 TRANSLATION protein_coding - CCDS51405.1 1 161.0 0.0 1.0 0.7 126.4 0.0 -4,-6 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000028468 Rgp1 ENSMUST00000107886 ENSMUSP00000103518 TRANSLATION protein_coding - CCDS38741.1 5 391.0 0.0 0.0 29.2 0.0 0.0 -4,-6 1.0 4 4.0 PRINCIPAL:1 ENSMUSG00000028468 Rgp1 ENSMUST00000117140 ENSMUSP00000113476 TRANSLATION protein_coding - - 1 363.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0326 4 0.0 MINOR ENSMUSG00000028468 Rgp1 ENSMUST00000141782 - NO_TRANSLATION retained_intron ENSMUSG00000028468 Rgp1 ENSMUST00000141612 - NO_TRANSLATION retained_intron ENSMUSG00000028468 Rgp1 ENSMUST00000131178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028468 Rgp1 ENSMUST00000135895 - NO_TRANSLATION retained_intron ENSMUSG00000028468 Rgp1 ENSMUST00000030190 ENSMUSP00000030190 TRANSLATION protein_coding - CCDS38741.1 1 391.0 0.0 0.0 29.2 0.0 0.0 -4,-6 1.0 4 4.0 PRINCIPAL:1 ENSMUSG00000028226 Mmp16 ENSMUST00000149353 ENSMUSP00000116930 TRANSLATION protein_coding stop - 3 174.0 6.0 2.53 0.0 100.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028226 Mmp16 ENSMUST00000142434 ENSMUSP00000121087 TRANSLATION protein_coding stop - 2 127.0 1.0 1.0 0.0 39.5 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000028226 Mmp16 ENSMUST00000183662 ENSMUSP00000139102 TRANSLATION nonsense_mediated_decay - - 1 415.0 25.0 5.83 0.0 284.7 0.0 -2,-5 0.0009 1 -2.0 MINOR ENSMUSG00000028226 Mmp16 ENSMUST00000133416 - NO_TRANSLATION retained_intron ENSMUSG00000028226 Mmp16 ENSMUST00000139418 - NO_TRANSLATION retained_intron ENSMUSG00000028226 Mmp16 ENSMUST00000029881 ENSMUSP00000029881 TRANSLATION protein_coding - CCDS17989.1 1 607.0 25.0 7.93 30.9 544.5 0.0 -2,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000035517 Tdrd7 ENSMUST00000140270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035517 Tdrd7 ENSMUST00000107777 ENSMUSP00000103406 TRANSLATION protein_coding - CCDS71381.1 1 1119.0 0.0 6.125 0.4 319.5 0.0 -4,-1 0.5955 29 8.0 ALTERNATIVE:2 ENSMUSG00000035517 Tdrd7 ENSMUST00000155936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035517 Tdrd7 ENSMUST00000151422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035517 Tdrd7 ENSMUST00000102929 ENSMUSP00000099993 TRANSLATION protein_coding - CCDS18142.1 1 1086.0 0.0 6.125 0.4 319.5 0.0 -4,-5 1.0 29 8.0 PRINCIPAL:2 ENSMUSG00000078354 Ifna2 ENSMUST00000105147 ENSMUSP00000100778 TRANSLATION protein_coding - CCDS18326.1 - 190.0 3.0 1.0 3.2 201.8 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036940 Kdm1a ENSMUST00000116273 ENSMUSP00000111977 TRANSLATION protein_coding - CCDS51331.1 1 853.0 37.0 17.58 5.7 510.5 0.0 -1,-4 1.0 25 15.0 PRINCIPAL:4 ENSMUSG00000036940 Kdm1a ENSMUST00000139690 - NO_TRANSLATION retained_intron ENSMUSG00000036940 Kdm1a ENSMUST00000155354 ENSMUSP00000114268 TRANSLATION protein_coding start/stop - 3 250.0 0.0 5.08 0.0 41.1 0.0 -4,-5 0.0001 8 -2.0 MINOR ENSMUSG00000036940 Kdm1a ENSMUST00000171424 - NO_TRANSLATION retained_intron ENSMUSG00000036940 Kdm1a ENSMUST00000105847 ENSMUSP00000101473 TRANSLATION protein_coding - CCDS84806.1 5 873.0 37.0 17.58 5.7 510.5 0.0 -1,-4 0.949 25 15.0 ALTERNATIVE:1 ENSMUSG00000036940 Kdm1a ENSMUST00000170979 ENSMUSP00000131385 TRANSLATION protein_coding start/stop - 5 322.0 18.0 9.25 0.0 167.0 0.0 -4,-5 0.0013 9 -2.0 MINOR ENSMUSG00000036940 Kdm1a ENSMUST00000046846 ENSMUSP00000035457 TRANSLATION protein_coding start - 5 683.0 37.0 15.58 0.0 506.4 0.0 -4,-5 0.0162 20 -2.0 MINOR ENSMUSG00000036940 Kdm1a ENSMUST00000147886 - NO_TRANSLATION retained_intron ENSMUSG00000036940 Kdm1a ENSMUST00000125111 - NO_TRANSLATION retained_intron ENSMUSG00000028760 Eif4g3 ENSMUST00000249658 ENSMUSP00000159837 TRANSLATION protein_coding start - - 1880.0 0.0 11.882 0.0 396.1 0.0 -,- 0.2958 39 -2.0 MINOR ENSMUSG00000028760 Eif4g3 ENSMUST00000140796 ENSMUSP00000115946 TRANSLATION protein_coding start - 5 1002.0 0.0 10.552 0.0 396.1 0.0 -,- 0.1472 26 -2.0 MINOR ENSMUSG00000028760 Eif4g3 ENSMUST00000105831 ENSMUSP00000101457 TRANSLATION protein_coding - - 5 1567.0 0.0 11.882 0.0 396.1 0.0 -,- 0.3603 36 8.0 ALTERNATIVE:2 ENSMUSG00000028760 Eif4g3 ENSMUST00000105830 ENSMUSP00000101456 TRANSLATION protein_coding - - 1 509.0 0.0 1.33 1.0 0.0 0.0 -,- 0.0644 7 0.0 MINOR ENSMUSG00000028760 Eif4g3 ENSMUST00000148074 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028760 Eif4g3 ENSMUST00000133902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028760 Eif4g3 ENSMUST00000155142 ENSMUSP00000122972 TRANSLATION protein_coding stop - 2 146.0 0.0 0.0 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000028760 Eif4g3 ENSMUST00000140317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028760 Eif4g3 ENSMUST00000084214 ENSMUSP00000081232 TRANSLATION protein_coding - CCDS38926.1 1 1578.0 0.0 11.882 1.1 396.1 0.0 -,- 0.9692 36 8.067 ALTERNATIVE:2 ENSMUSG00000028760 Eif4g3 ENSMUST00000058133 ENSMUSP00000059465 TRANSLATION protein_coding - - 1 235.0 0.0 1.33 0.0 0.0 0.0 -,- 0.0 1 0.0 MINOR ENSMUSG00000028760 Eif4g3 ENSMUST00000203828 ENSMUSP00000145147 TRANSLATION protein_coding - - 5 1762.0 0.0 11.882 0.0 396.1 0.0 -,- 0.2942 39 8.0 ALTERNATIVE:2 ENSMUSG00000028760 Eif4g3 ENSMUST00000127707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028760 Eif4g3 ENSMUST00000139759 ENSMUSP00000116927 TRANSLATION protein_coding stop - 5 183.0 0.0 1.33 0.0 0.0 0.0 -,- 0.0 1 -2.0 MINOR ENSMUSG00000028760 Eif4g3 ENSMUST00000135745 - NO_TRANSLATION retained_intron ENSMUSG00000028760 Eif4g3 ENSMUST00000132194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028760 Eif4g3 ENSMUST00000084215 ENSMUSP00000081233 TRANSLATION protein_coding - - 5 1579.0 0.0 11.882 2.5 396.1 0.0 -,- 1.0 36 9.0 PRINCIPAL:4 ENSMUSG00000029071 Dvl1 ENSMUST00000133184 - NO_TRANSLATION retained_intron ENSMUSG00000029071 Dvl1 ENSMUST00000143457 - NO_TRANSLATION retained_intron ENSMUSG00000029071 Dvl1 ENSMUST00000168552 ENSMUSP00000133137 TRANSLATION protein_coding - CCDS19045.1 1 695.0 0.0 6.85 7.1 622.0 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000029071 Dvl1 ENSMUST00000140529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029071 Dvl1 ENSMUST00000030948 ENSMUSP00000030948 TRANSLATION protein_coding - CCDS19045.1 1 695.0 0.0 6.85 7.1 622.0 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000029071 Dvl1 ENSMUST00000129450 - NO_TRANSLATION retained_intron ENSMUSG00000029071 Dvl1 ENSMUST00000141539 - NO_TRANSLATION retained_intron ENSMUSG00000029071 Dvl1 ENSMUST00000156997 - NO_TRANSLATION retained_intron ENSMUSG00000094648 Gm13287 ENSMUST00000179490 ENSMUSP00000136234 TRANSLATION protein_coding - CCDS51228.1 - 182.0 0.0 0.4 0.0 94.5 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028779 Pef1 ENSMUST00000118199 ENSMUSP00000112638 TRANSLATION protein_coding - CCDS18706.1 5 275.0 15.0 3.0 3.6 50.6 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000028779 Pef1 ENSMUST00000030563 ENSMUSP00000030563 TRANSLATION protein_coding - CCDS18706.1 1 275.0 15.0 3.0 3.6 50.6 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000054752 Fsd1l ENSMUST00000162270 - NO_TRANSLATION retained_intron ENSMUSG00000054752 Fsd1l ENSMUST00000107643 - NO_TRANSLATION retained_intron ENSMUSG00000054752 Fsd1l ENSMUST00000159415 ENSMUSP00000124002 TRANSLATION protein_coding stop - 5 504.0 0.0 2.596 19.7 67.8 0.0 -4,-5 0.8382 8 -2.0 MINOR ENSMUSG00000054752 Fsd1l ENSMUST00000132151 ENSMUSP00000114931 TRANSLATION protein_coding - CCDS57276.1 5 497.0 0.0 2.55 19.0 67.8 0.0 -4,-5 1.0 8 15.744 PRINCIPAL:1 ENSMUSG00000054752 Fsd1l ENSMUST00000163067 ENSMUSP00000124613 TRANSLATION protein_coding stop - 5 493.0 0.0 2.53 16.8 67.8 0.0 -4,-5 0.8355 8 -2.0 MINOR ENSMUSG00000054752 Fsd1l ENSMUST00000129648 ENSMUSP00000121176 TRANSLATION nonsense_mediated_decay - - 1 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035031 C8a ENSMUST00000152146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035031 C8a ENSMUST00000106808 ENSMUSP00000102420 TRANSLATION protein_coding - CCDS71433.1 2 543.0 6.0 8.8 0.0 207.0 0.0 -4,-6 0.0423 14 14.604 MINOR ENSMUSG00000035031 C8a ENSMUST00000048947 ENSMUSP00000047606 TRANSLATION protein_coding - CCDS84763.1 1 580.0 9.0 9.2 0.0 183.8 0.0 3,-2 0.1669 16 16.008 MINOR ENSMUSG00000035031 C8a ENSMUST00000064873 ENSMUSP00000067541 TRANSLATION protein_coding - CCDS18415.1 1 587.0 9.0 9.5 6.9 207.0 0.0 3,-2 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000058935 Tex48 ENSMUST00000102861 ENSMUSP00000099925 TRANSLATION protein_coding - CCDS18262.1 1 110.0 0.0 0.0 0.4 0.0 0.0 -4,-6 0.8367 1 0.0 PRINCIPAL:1 ENSMUSG00000058935 Tex48 ENSMUST00000102862 ENSMUSP00000099926 TRANSLATION protein_coding - CCDS18262.1 1 110.0 0.0 0.0 0.4 0.0 0.0 -4,-6 0.8367 1 0.0 PRINCIPAL:1 ENSMUSG00000056494 Cngb3 ENSMUST00000102999 ENSMUSP00000100064 TRANSLATION protein_coding - CCDS17990.1 1 694.0 13.0 9.55 0.0 61.9 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028328 Tmod1 ENSMUST00000155730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028328 Tmod1 ENSMUST00000136553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028328 Tmod1 ENSMUST00000128689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028328 Tmod1 ENSMUST00000107773 ENSMUSP00000103402 TRANSLATION protein_coding - CCDS18143.1 5 359.0 0.0 6.445 31.7 205.0 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000028328 Tmod1 ENSMUST00000156200 ENSMUSP00000134075 TRANSLATION protein_coding stop - 3 47.0 0.0 0.165 0.0 48.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050989 Selenon ENSMUST00000127585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050989 Selenon ENSMUST00000060435 ENSMUSP00000060026 TRANSLATION protein_coding - CCDS38917.1 5 557.0 5.0 0.0 0.4 0.0 0.0 -1,2 0.9058 4 5.0 PRINCIPAL:1 ENSMUSG00000041616 Nppa ENSMUST00000103230 ENSMUSP00000099520 TRANSLATION protein_coding - CCDS18927.1 1 152.0 0.0 0.4 9.6 40.5 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000078507 Aadacl3 ENSMUST00000105749 ENSMUSP00000101375 TRANSLATION protein_coding - CCDS38954.1 5 408.0 3.0 3.75 2.8 0.0 0.0 0,-4 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000070720 Tmem200b ENSMUST00000094666 ENSMUSP00000092253 TRANSLATION protein_coding - CCDS51316.1 - 284.0 0.0 0.0 0.4 86.0 2.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070720 Tmem200b ENSMUST00000238733 ENSMUSP00000158757 TRANSLATION protein_coding - CCDS51316.1 - 284.0 0.0 0.0 0.4 86.0 2.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000009640 Dmap1 ENSMUST00000123586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009640 Dmap1 ENSMUST00000134642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009640 Dmap1 ENSMUST00000129510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009640 Dmap1 ENSMUST00000135582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009640 Dmap1 ENSMUST00000102687 ENSMUSP00000099748 TRANSLATION protein_coding - CCDS18536.1 1 468.0 0.0 1.8 2.9 360.2 0.0 -4,-5 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000009640 Dmap1 ENSMUST00000127750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073811 Ifna12 ENSMUST00000102806 ENSMUSP00000099870 TRANSLATION protein_coding - CCDS18322.1 - 189.0 3.0 1.0 5.3 210.9 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000028433 Ubap2 ENSMUST00000143552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028433 Ubap2 ENSMUST00000136057 ENSMUSP00000120205 TRANSLATION protein_coding start/stop - 1 140.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028433 Ubap2 ENSMUST00000030143 ENSMUSP00000030143 TRANSLATION protein_coding - CCDS18058.1 1 1132.0 0.0 1.95 1.2 78.3 0.0 -4,-2 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000028433 Ubap2 ENSMUST00000135323 ENSMUSP00000122256 TRANSLATION protein_coding stop - 3 227.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0011 2 -2.0 MINOR ENSMUSG00000028433 Ubap2 ENSMUST00000134782 ENSMUSP00000121724 TRANSLATION protein_coding start/stop - 3 245.0 0.0 1.95 0.0 21.9 0.0 -4,-7 0.042 1 -2.0 MINOR ENSMUSG00000028433 Ubap2 ENSMUST00000108068 ENSMUSP00000103703 TRANSLATION protein_coding - - 1 1131.0 0.0 1.95 1.2 78.3 0.0 -4,-2 0.674 13 9.0 ALTERNATIVE:2 ENSMUSG00000028433 Ubap2 ENSMUST00000132499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028433 Ubap2 ENSMUST00000140662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007880 Arid1a ENSMUST00000008024 ENSMUSP00000008024 TRANSLATION protein_coding - - 1 1902.0 0.0 2.5 1.2 424.0 0.0 -4,-5 0.8882 30 9.0 ALTERNATIVE:2 ENSMUSG00000007880 Arid1a ENSMUST00000145664 ENSMUSP00000122354 TRANSLATION protein_coding - - 2 2287.0 0.0 2.5 0.0 424.0 0.0 -4,-6 0.4703 35 8.0 ALTERNATIVE:2 ENSMUSG00000007880 Arid1a ENSMUST00000168582 - NO_TRANSLATION retained_intron ENSMUSG00000007880 Arid1a ENSMUST00000105897 ENSMUSP00000101517 TRANSLATION protein_coding - CCDS38908.1 5 2283.0 0.0 2.5 0.0 424.0 0.0 -4,-6 0.8813 34 8.0 PRINCIPAL:3 ENSMUSG00000007880 Arid1a ENSMUST00000138473 - NO_TRANSLATION retained_intron ENSMUSG00000007880 Arid1a ENSMUST00000139709 ENSMUSP00000131950 TRANSLATION protein_coding stop - 2 140.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054659 Pm20d2 ENSMUST00000119167 ENSMUSP00000113669 TRANSLATION protein_coding - - 1 305.0 9.0 4.066 0.0 34.4 0.0 -4,-5 0.001 5 8.568 MINOR ENSMUSG00000054659 Pm20d2 ENSMUST00000098181 ENSMUSP00000095783 TRANSLATION protein_coding - CCDS51136.1 5 431.0 10.0 7.0 4.2 66.6 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000036002 Atosb ENSMUST00000107957 ENSMUSP00000103591 TRANSLATION protein_coding - CCDS18090.1 5 538.0 0.0 0.0 11.3 115.0 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000036002 Atosb ENSMUST00000152846 ENSMUSP00000118228 TRANSLATION protein_coding stop - 2 137.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036002 Atosb ENSMUST00000107956 ENSMUSP00000103590 TRANSLATION protein_coding - CCDS18090.1 5 538.0 0.0 0.0 11.3 115.0 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000036002 Atosb ENSMUST00000144999 ENSMUSP00000119404 TRANSLATION protein_coding stop - 3 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0039 - -2.0 MINOR ENSMUSG00000036002 Atosb ENSMUST00000140998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036002 Atosb ENSMUST00000124155 ENSMUSP00000115835 TRANSLATION protein_coding stop - 2 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036002 Atosb ENSMUST00000107958 ENSMUSP00000103592 TRANSLATION protein_coding - CCDS18090.1 1 538.0 0.0 0.0 11.3 115.0 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000036002 Atosb ENSMUST00000107959 ENSMUSP00000103593 TRANSLATION protein_coding - CCDS18090.1 1 538.0 0.0 0.0 11.3 115.0 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000036002 Atosb ENSMUST00000036462 ENSMUSP00000038177 TRANSLATION protein_coding - CCDS18090.1 1 538.0 0.0 0.0 11.3 115.0 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000036002 Atosb ENSMUST00000135067 ENSMUSP00000122882 TRANSLATION nonsense_mediated_decay - - 1 332.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000028961 Pgd ENSMUST00000143944 - NO_TRANSLATION retained_intron ENSMUSG00000028961 Pgd ENSMUST00000156120 - NO_TRANSLATION retained_intron ENSMUSG00000028961 Pgd ENSMUST00000084124 ENSMUSP00000081141 TRANSLATION protein_coding - CCDS38974.1 1 483.0 25.0 11.25 29.2 606.3 0.0 -4,-7 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000028961 Pgd ENSMUST00000137982 - NO_TRANSLATION retained_intron ENSMUSG00000028961 Pgd ENSMUST00000124409 - NO_TRANSLATION retained_intron ENSMUSG00000037583 Nr0b2 ENSMUST00000042706 ENSMUSP00000039175 TRANSLATION protein_coding - CCDS18751.1 1 260.0 0.0 1.32 8.1 54.7 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061887 Ssbp3 ENSMUST00000131111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000141963 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000156288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000097934 ENSMUSP00000095547 TRANSLATION protein_coding - - 5 368.0 0.0 3.15 15.4 278.6 0.0 -4,-7 0.5633 1 11.048 MINOR ENSMUSG00000061887 Ssbp3 ENSMUST00000131440 ENSMUSP00000120323 TRANSLATION protein_coding stop - 3 93.0 0.0 0.4 0.0 59.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061887 Ssbp3 ENSMUST00000146659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000133827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000136487 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000124936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000132506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000150915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000072753 ENSMUSP00000072536 TRANSLATION protein_coding - CCDS18428.1 1 361.0 0.0 3.15 26.9 218.1 0.0 -4,-7 0.7655 1 9.728 MINOR ENSMUSG00000061887 Ssbp3 ENSMUST00000138475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000137786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061887 Ssbp3 ENSMUST00000030367 ENSMUSP00000030367 TRANSLATION protein_coding - CCDS18427.1 1 388.0 0.0 3.15 28.8 329.0 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000061887 Ssbp3 ENSMUST00000149926 ENSMUSP00000116248 TRANSLATION protein_coding stop - 5 225.0 0.0 3.15 0.0 153.6 0.0 -4,-7 0.0154 - -2.0 MINOR ENSMUSG00000061887 Ssbp3 ENSMUST00000148842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028795 Ccdc28b ENSMUST00000150357 ENSMUSP00000118241 TRANSLATION protein_coding stop - 3 104.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028795 Ccdc28b ENSMUST00000152708 - NO_TRANSLATION retained_intron ENSMUSG00000028795 Ccdc28b ENSMUST00000030586 ENSMUSP00000030586 TRANSLATION protein_coding - CCDS18700.1 1 200.0 0.0 1.99 10.3 112.0 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000028795 Ccdc28b ENSMUST00000123943 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028795 Ccdc28b ENSMUST00000152290 - NO_TRANSLATION retained_intron ENSMUSG00000028795 Ccdc28b ENSMUST00000124630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028795 Ccdc28b ENSMUST00000151838 ENSMUSP00000122229 TRANSLATION nonsense_mediated_decay - - 3 149.0 0.0 0.93 0.0 36.6 0.0 -4,-7 0.0003 - -2.0 MINOR ENSMUSG00000028795 Ccdc28b ENSMUST00000141361 - NO_TRANSLATION retained_intron ENSMUSG00000028795 Ccdc28b ENSMUST00000126777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028795 Ccdc28b ENSMUST00000106035 ENSMUSP00000101652 TRANSLATION protein_coding - - 1 205.0 0.0 1.26 0.0 97.6 0.0 -4,-7 0.0187 1 8.934 MINOR ENSMUSG00000041399 1700013G24Rik ENSMUST00000048893 ENSMUSP00000043461 TRANSLATION protein_coding - CCDS18818.1 1 286.0 0.0 0.0 2.7 0.0 0.0 -4,-2 0.9467 2 1.0 PRINCIPAL:1 ENSMUSG00000039555 Cylc2 ENSMUST00000156384 ENSMUSP00000158665 TRANSLATION protein_coding - - 5 665.0 0.0 0.0 0.0 143.8 0.0 -4,-5 0.7625 2 6.0 PRINCIPAL:1 ENSMUSG00000028461 Ccdc107 ENSMUST00000127324 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028461 Ccdc107 ENSMUST00000137113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028461 Ccdc107 ENSMUST00000107922 ENSMUSP00000103555 TRANSLATION protein_coding - - 2 267.0 0.0 0.0 0.3 0.0 0.0 3,-1 0.1433 2 0.0 ALTERNATIVE:2 ENSMUSG00000028461 Ccdc107 ENSMUST00000140005 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028461 Ccdc107 ENSMUST00000030181 ENSMUSP00000030181 TRANSLATION protein_coding - CCDS18097.1 1 242.0 0.0 0.0 0.1 0.0 0.0 3,-1 1.0 2 0.0 PRINCIPAL:2 ENSMUSG00000028461 Ccdc107 ENSMUST00000143073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039105 Atp6v1g1 ENSMUST00000035301 ENSMUSP00000048770 TRANSLATION protein_coding - CCDS18260.1 1 118.0 0.0 2.75 36.9 133.3 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000028359 Orm3 ENSMUST00000006687 ENSMUSP00000006687 TRANSLATION protein_coding - CCDS18252.1 5 206.0 0.0 5.0 0.0 82.3 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000078584 AU022252 ENSMUST00000132778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078584 AU022252 ENSMUST00000046260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078584 AU022252 ENSMUST00000144309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078584 AU022252 ENSMUST00000141112 ENSMUSP00000115729 TRANSLATION protein_coding - CCDS18575.1 1 199.0 0.0 3.75 5.4 249.3 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000078576 Gm12886 ENSMUST00000106266 ENSMUSP00000101873 TRANSLATION protein_coding - CCDS51295.1 5 119.0 0.0 1.2 0.1 0.0 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000067261 Foxd3 ENSMUST00000087285 ENSMUSP00000084541 TRANSLATION protein_coding - CCDS18383.1 - 469.0 0.0 0.4 0.4 130.9 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000063446 Plppr1 ENSMUST00000076670 ENSMUSP00000075966 TRANSLATION protein_coding - CCDS18170.1 1 325.0 4.0 1.432 26.0 74.8 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000063446 Plppr1 ENSMUST00000151692 - NO_TRANSLATION retained_intron ENSMUSG00000063446 Plppr1 ENSMUST00000137884 - NO_TRANSLATION retained_intron ENSMUSG00000028629 Exo5 ENSMUST00000030375 ENSMUSP00000030375 TRANSLATION protein_coding - CCDS18596.1 1 373.0 2.0 2.8 9.6 0.0 0.0 -4,-5 1.0 - 11.0 PRINCIPAL:1 ENSMUSG00000028629 Exo5 ENSMUST00000177880 ENSMUSP00000136408 TRANSLATION protein_coding - CCDS18596.1 2 373.0 2.0 2.8 9.6 0.0 0.0 -4,-5 1.0 - 11.0 PRINCIPAL:1 ENSMUSG00000028629 Exo5 ENSMUST00000144114 ENSMUSP00000116454 TRANSLATION protein_coding start - 2 159.0 2.0 1.0 0.0 0.0 0.0 -4,-6 0.0061 - -2.0 MINOR ENSMUSG00000028629 Exo5 ENSMUST00000156836 ENSMUSP00000118041 TRANSLATION protein_coding stop - 2 132.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000028480 Glipr2 ENSMUST00000030202 ENSMUSP00000030202 TRANSLATION protein_coding - CCDS18117.1 1 154.0 2.0 3.75 31.8 81.3 0.0 -4,-6 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000028480 Glipr2 ENSMUST00000107855 ENSMUSP00000103487 TRANSLATION protein_coding - - 2 83.0 1.0 1.75 0.0 46.3 0.0 -4,-5 0.0 3 6.412 MINOR ENSMUSG00000028419 Chmp5 ENSMUST00000030128 ENSMUSP00000030128 TRANSLATION protein_coding - CCDS18053.1 1 219.0 0.0 6.2 34.9 187.7 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028840 Zfp593 ENSMUST00000030644 ENSMUSP00000030644 TRANSLATION protein_coding - CCDS51325.1 1 134.0 4.0 2.25 11.0 32.1 0.0 -4,-7 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000028840 Zfp593 ENSMUST00000129183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035305 Ror1 ENSMUST00000039630 ENSMUSP00000048171 TRANSLATION protein_coding - CCDS18389.1 1 937.0 18.0 0.8 1.9 496.9 0.0 3,-2 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000028581 Laptm5 ENSMUST00000156742 ENSMUSP00000123382 TRANSLATION protein_coding start/stop - 1 241.0 0.0 1.93 0.0 0.0 8.0 -4,-5 0.0615 - -2.0 MINOR ENSMUSG00000028581 Laptm5 ENSMUST00000143450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028581 Laptm5 ENSMUST00000156225 ENSMUSP00000121133 TRANSLATION protein_coding stop - 3 107.0 0.0 0.93 0.0 0.0 5.0 -4,-6 0.0207 - -2.0 MINOR ENSMUSG00000028581 Laptm5 ENSMUST00000030316 ENSMUSP00000030316 TRANSLATION protein_coding start - 1 264.0 0.0 1.93 0.0 0.0 7.0 -4,-6 0.1167 1 -2.0 MINOR ENSMUSG00000028581 Laptm5 ENSMUST00000136082 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028581 Laptm5 ENSMUST00000123550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028581 Laptm5 ENSMUST00000156170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028581 Laptm5 ENSMUST00000139023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028581 Laptm5 ENSMUST00000151698 ENSMUSP00000118415 TRANSLATION protein_coding - CCDS18712.1 1 261.0 0.0 1.93 5.8 0.0 8.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000028581 Laptm5 ENSMUST00000125332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028950 Tas1r1 ENSMUST00000030792 ENSMUSP00000030792 TRANSLATION protein_coding - CCDS18985.1 1 842.0 0.0 2.9 6.0 403.4 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070980 Actl7b ENSMUST00000095080 ENSMUSP00000092693 TRANSLATION protein_coding - CCDS18196.1 - 418.0 22.0 0.8 8.8 332.2 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000100234 Gm13277 ENSMUST00000178480 ENSMUSP00000136624 TRANSLATION protein_coding - CCDS38805.1 - 182.0 0.0 0.4 0.0 94.6 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043962 Thrap3 ENSMUST00000154702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043962 Thrap3 ENSMUST00000169403 ENSMUSP00000125856 TRANSLATION protein_coding stop - 3 50.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000043962 Thrap3 ENSMUST00000140390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043962 Thrap3 ENSMUST00000124327 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043962 Thrap3 ENSMUST00000130334 ENSMUSP00000120455 TRANSLATION protein_coding stop - 3 29.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000043962 Thrap3 ENSMUST00000151728 - NO_TRANSLATION retained_intron ENSMUSG00000043962 Thrap3 ENSMUST00000163459 ENSMUSP00000129775 TRANSLATION protein_coding start/stop - 5 194.0 0.0 0.882 0.0 83.6 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000043962 Thrap3 ENSMUST00000163306 ENSMUSP00000126399 TRANSLATION protein_coding start/stop - 3 135.0 0.0 1.15 0.0 170.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000043962 Thrap3 ENSMUST00000163176 ENSMUSP00000129416 TRANSLATION nonsense_mediated_decay start - 3 43.0 0.0 0.0 0.0 33.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043962 Thrap3 ENSMUST00000123008 ENSMUSP00000131956 TRANSLATION nonsense_mediated_decay - - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000043962 Thrap3 ENSMUST00000136157 ENSMUSP00000120140 TRANSLATION protein_coding stop - 5 53.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000043962 Thrap3 ENSMUST00000080919 ENSMUSP00000079722 TRANSLATION protein_coding - CCDS18645.1 1 951.0 0.0 1.282 0.1 705.4 0.0 -4,-7 1.0 24 12.0 PRINCIPAL:1 ENSMUSG00000043962 Thrap3 ENSMUST00000169855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043962 Thrap3 ENSMUST00000130477 - NO_TRANSLATION retained_intron ENSMUSG00000043962 Thrap3 ENSMUST00000106141 ENSMUSP00000101747 TRANSLATION protein_coding stop - 3 25.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000043962 Thrap3 ENSMUST00000142125 ENSMUSP00000118414 TRANSLATION protein_coding stop - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000043962 Thrap3 ENSMUST00000106142 ENSMUSP00000101748 TRANSLATION protein_coding - - 1 709.0 0.0 1.282 0.0 571.6 0.0 -4,-7 0.0762 18 6.0 MINOR ENSMUSG00000043962 Thrap3 ENSMUST00000168568 - NO_TRANSLATION retained_intron ENSMUSG00000046593 Tmem215 ENSMUST00000179526 ENSMUSP00000136595 TRANSLATION protein_coding - CCDS18046.1 1 235.0 0.0 0.0 12.5 377.8 2.0 -2,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000046593 Tmem215 ENSMUST00000049655 ENSMUSP00000052129 TRANSLATION protein_coding - CCDS18046.1 1 235.0 0.0 0.0 12.5 377.8 2.0 -2,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000040533 Matn1 ENSMUST00000102576 ENSMUSP00000099636 TRANSLATION protein_coding - CCDS18713.1 1 500.0 10.0 5.35 3.9 460.6 0.0 4,-1 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000029038 Ssu72 ENSMUST00000105595 ENSMUSP00000101220 TRANSLATION protein_coding - - 1 182.0 0.0 3.75 0.0 275.8 0.0 -4,-2 0.0011 6 7.86 MINOR ENSMUSG00000029038 Ssu72 ENSMUST00000140322 - NO_TRANSLATION retained_intron ENSMUSG00000029038 Ssu72 ENSMUST00000030905 ENSMUSP00000030905 TRANSLATION protein_coding - CCDS19036.1 1 194.0 0.0 4.75 34.7 311.5 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000028436 Dcaf12 ENSMUST00000030145 ENSMUSP00000030145 TRANSLATION protein_coding - CCDS18059.1 1 453.0 0.0 0.0 24.2 0.0 0.0 -4,-7 1.0 1 4.0 PRINCIPAL:1 ENSMUSG00000048772 Tmem53 ENSMUST00000125943 ENSMUSP00000121458 TRANSLATION protein_coding stop - 3 252.0 0.0 2.198 0.0 181.4 0.0 -4,-5 0.009 1 -2.0 MINOR ENSMUSG00000048772 Tmem53 ENSMUST00000106434 ENSMUSP00000102042 TRANSLATION protein_coding - CCDS71453.1 1 283.0 0.0 2.405 1.2 184.9 0.0 -4,-5 0.4139 1 12.066 MINOR ENSMUSG00000048772 Tmem53 ENSMUST00000154449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048772 Tmem53 ENSMUST00000106433 ENSMUSP00000102041 TRANSLATION protein_coding - CCDS71454.1 1 261.0 0.0 2.363 1.0 184.9 0.0 -4,-5 0.2975 1 11.898 MINOR ENSMUSG00000048772 Tmem53 ENSMUST00000145836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048772 Tmem53 ENSMUST00000062824 ENSMUSP00000061523 TRANSLATION protein_coding - CCDS18533.1 1 276.0 0.0 2.405 7.1 184.9 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000078500 Zfp986 ENSMUST00000123460 ENSMUSP00000116281 TRANSLATION protein_coding stop - 2 401.0 23.0 1.55 0.0 224.2 0.0 -4,-7 0.8093 - -2.0 PRINCIPAL:5 ENSMUSG00000078500 Zfp986 ENSMUST00000166629 ENSMUSP00000130542 TRANSLATION protein_coding start/stop - - 21.0 2.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000034210 Efcab14 ENSMUST00000106524 ENSMUSP00000102134 TRANSLATION protein_coding - - 5 451.0 5.0 0.0 0.0 0.0 1.0 -4,-7 0.0769 8 5.0 ALTERNATIVE:2 ENSMUSG00000034210 Efcab14 ENSMUST00000074425 ENSMUSP00000074025 TRANSLATION protein_coding - CCDS18494.1 1 529.0 5.0 0.0 0.1 0.0 1.0 -4,-6 0.2278 7 5.0 ALTERNATIVE:2 ENSMUSG00000034210 Efcab14 ENSMUST00000136593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034210 Efcab14 ENSMUST00000132306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034210 Efcab14 ENSMUST00000106522 ENSMUSP00000102132 TRANSLATION protein_coding - - 1 467.0 0.0 0.0 0.0 0.0 1.0 -4,-6 0.1275 6 0.0 MINOR ENSMUSG00000034210 Efcab14 ENSMUST00000106525 ENSMUSP00000102135 TRANSLATION protein_coding - - 1 484.0 5.0 0.0 0.1 0.0 1.0 -4,-6 0.5929 7 5.0 PRINCIPAL:2 ENSMUSG00000034210 Efcab14 ENSMUST00000141927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078365 Mos ENSMUST00000105158 ENSMUSP00000100789 TRANSLATION protein_coding - CCDS38685.1 - 343.0 21.0 0.2 3.6 144.5 0.0 -4,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000028967 Errfi1 ENSMUST00000073600 ENSMUSP00000073285 TRANSLATION protein_coding - CCDS18974.1 1 461.0 0.0 0.0 12.3 77.2 0.0 -4,-5 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000028967 Errfi1 ENSMUST00000128640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028967 Errfi1 ENSMUST00000030811 ENSMUSP00000030811 TRANSLATION protein_coding - CCDS18974.1 1 461.0 0.0 0.0 12.3 77.2 0.0 -4,-5 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000061322 Dnai1 ENSMUST00000119127 ENSMUSP00000113929 TRANSLATION protein_coding - - 1 95.0 0.0 1.05 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000061322 Dnai1 ENSMUST00000102963 ENSMUSP00000100028 TRANSLATION protein_coding - CCDS18066.1 1 701.0 0.0 9.825 3.5 17.8 0.0 -4,-7 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000061322 Dnai1 ENSMUST00000143198 - NO_TRANSLATION retained_intron ENSMUSG00000029451 Pramel27 ENSMUST00000105768 ENSMUSP00000101394 TRANSLATION protein_coding - - 2 173.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0012 - 1.902 MINOR ENSMUSG00000029451 Pramel27 ENSMUST00000139747 ENSMUSP00000123640 TRANSLATION protein_coding stop - 3 134.0 0.0 1.65 0.0 0.0 0.0 -4,-7 0.0169 - -2.0 MINOR ENSMUSG00000029451 Pramel27 ENSMUST00000094522 ENSMUSP00000092099 TRANSLATION protein_coding - CCDS38949.1 1 491.0 2.0 3.85 0.0 0.0 0.0 -4,-5 0.9497 - 8.0 PRINCIPAL:1 ENSMUSG00000033191 Tie1 ENSMUST00000184261 ENSMUSP00000139279 TRANSLATION protein_coding - - 2 647.0 0.0 7.165 0.0 144.5 0.0 2,-2 0.0029 6 0.0 MINOR ENSMUSG00000033191 Tie1 ENSMUST00000047421 ENSMUSP00000037129 TRANSLATION protein_coding - CCDS18553.1 1 1134.0 18.0 14.6 8.8 503.8 0.0 2,-2 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000033191 Tie1 ENSMUST00000153286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087194 Skint6 ENSMUST00000138966 ENSMUSP00000121870 TRANSLATION protein_coding - CCDS51269.1 1 1240.0 0.0 2.12 0.0 50.2 0.0 1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000087194 Skint6 ENSMUST00000171224 ENSMUSP00000132312 TRANSLATION protein_coding - CCDS51269.1 5 1240.0 0.0 2.12 0.0 50.2 0.0 1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028525 Pde4b ENSMUST00000172845 - NO_TRANSLATION retained_intron ENSMUSG00000028525 Pde4b ENSMUST00000030251 ENSMUSP00000030251 TRANSLATION protein_coding - CCDS51245.1 1 484.0 6.0 8.35 1.1 315.6 0.0 -4,-5 0.1335 9 9.76 MINOR ENSMUSG00000028525 Pde4b ENSMUST00000097950 ENSMUSP00000095562 TRANSLATION protein_coding - CCDS51243.1 1 564.0 6.0 9.35 4.0 315.6 0.0 -4,-6 0.2219 9 12.338 MINOR ENSMUSG00000028525 Pde4b ENSMUST00000106908 ENSMUSP00000102521 TRANSLATION protein_coding - CCDS18403.1 1 721.0 6.0 10.48 21.0 315.6 0.0 -4,-5 1.0 13 18.0 ALTERNATIVE:1 ENSMUSG00000028525 Pde4b ENSMUST00000097949 ENSMUSP00000095561 TRANSLATION protein_coding - CCDS51244.1 1 503.0 6.0 8.35 18.1 315.6 0.0 -4,-6 0.8325 9 13.16 MINOR ENSMUSG00000028525 Pde4b ENSMUST00000173119 ENSMUSP00000133413 TRANSLATION nonsense_mediated_decay - - 1 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028525 Pde4b ENSMUST00000106907 ENSMUSP00000102520 TRANSLATION protein_coding - CCDS57289.1 1 212.0 0.0 1.53 0.0 0.0 0.0 -4,-5 0.0152 3 0.0 MINOR ENSMUSG00000028525 Pde4b ENSMUST00000174186 ENSMUSP00000134690 TRANSLATION nonsense_mediated_decay start - 5 121.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028525 Pde4b ENSMUST00000106901 ENSMUSP00000102514 TRANSLATION protein_coding - - 2 402.0 6.0 7.5 0.0 276.0 0.0 -4,-6 0.0035 7 6.042 MINOR ENSMUSG00000028525 Pde4b ENSMUST00000106911 ENSMUSP00000102524 TRANSLATION protein_coding - - 5 736.0 6.0 10.48 18.8 315.6 0.0 -4,-5 0.8187 15 17.56 PRINCIPAL:3 ENSMUSG00000028525 Pde4b ENSMUST00000133632 - NO_TRANSLATION retained_intron ENSMUSG00000028525 Pde4b ENSMUST00000106904 ENSMUSP00000102517 TRANSLATION protein_coding - - 5 659.0 6.0 10.48 7.9 315.6 0.0 -4,-5 0.327 12 15.38 MINOR ENSMUSG00000028525 Pde4b ENSMUST00000172616 ENSMUSP00000134340 TRANSLATION protein_coding - - 5 161.0 0.0 1.13 0.0 0.0 0.0 -4,-6 0.0 2 0.0 MINOR ENSMUSG00000065999 Zfp985 ENSMUST00000139784 ENSMUSP00000123296 TRANSLATION protein_coding stop - 2 150.0 0.0 1.5 0.0 71.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000065999 Zfp985 ENSMUST00000143885 ENSMUSP00000121177 TRANSLATION protein_coding stop - 3 88.0 0.0 1.04 0.0 71.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000065999 Zfp985 ENSMUST00000081742 ENSMUSP00000080438 TRANSLATION protein_coding - CCDS18921.1 1 519.0 40.0 2.5 0.1 279.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028571 Cyp2j13 ENSMUST00000132513 ENSMUSP00000121962 TRANSLATION protein_coding start - 3 156.0 14.0 3.0 0.0 165.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028571 Cyp2j13 ENSMUST00000107078 ENSMUSP00000102693 TRANSLATION protein_coding - - 1 374.0 19.0 6.5 0.0 262.0 1.0 0,-3 0.0042 - 0.0 MINOR ENSMUSG00000028571 Cyp2j13 ENSMUST00000097973 ENSMUSP00000095587 TRANSLATION protein_coding - CCDS84755.1 5 433.0 22.0 8.0 2.5 318.0 1.0 0,-3 0.1077 - 2.702 MINOR ENSMUSG00000028571 Cyp2j13 ENSMUST00000030305 ENSMUSP00000030305 TRANSLATION protein_coding - CCDS18368.1 1 503.0 30.0 10.25 6.6 432.0 1.0 0,-3 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000028475 Spaar ENSMUST00000142309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028475 Spaar ENSMUST00000131248 ENSMUSP00000148128 TRANSLATION protein_coding - - 1 75.0 0.0 0.0 5.4 0.0 0.0 -1,-5 0.7292 - 2.0 PRINCIPAL:1 ENSMUSG00000043085 Tmem82 ENSMUST00000053263 ENSMUSP00000058412 TRANSLATION protein_coding - CCDS18877.1 1 356.0 0.0 0.0 0.4 445.0 4.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000043085 Tmem82 ENSMUST00000143154 ENSMUSP00000120973 TRANSLATION nonsense_mediated_decay - - 1 270.0 0.0 0.0 0.0 360.3 3.0 -4,-6 0.0041 - -2.0 MINOR ENSMUSG00000043085 Tmem82 ENSMUST00000156246 - NO_TRANSLATION retained_intron ENSMUSG00000039853 Trim14 ENSMUST00000102924 ENSMUSP00000099988 TRANSLATION protein_coding - - 2 283.0 8.0 1.765 0.0 46.1 0.0 -4,-5 0.0 6 10.02 MINOR ENSMUSG00000039853 Trim14 ENSMUST00000184112 ENSMUSP00000138876 TRANSLATION nonsense_mediated_decay - - 2 178.0 8.0 1.1 0.0 46.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000039853 Trim14 ENSMUST00000142606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039853 Trim14 ENSMUST00000136978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039853 Trim14 ENSMUST00000046897 ENSMUSP00000038719 TRANSLATION protein_coding - CCDS18153.1 1 440.0 8.0 2.765 1.4 142.9 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000039853 Trim14 ENSMUST00000142502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045364 Ifne ENSMUST00000056014 ENSMUSP00000059199 TRANSLATION protein_coding - CCDS18348.1 - 192.0 0.0 0.4 6.5 168.5 0.0 -1,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044303 Cdkn2a ENSMUST00000060501 ENSMUSP00000061847 TRANSLATION protein_coding - CCDS38812.1 1 168.0 0.0 2.25 0.0 28.9 0.0 -4,-2 0.7407 - 7.334 PRINCIPAL:1 ENSMUSG00000044303 Cdkn2a ENSMUST00000107131 ENSMUSP00000102748 TRANSLATION protein_coding - CCDS18350.1 1 169.0 0.0 1.0 0.0 79.0 0.0 -4,0 0.5241 - 4.664 MINOR ENSMUSG00000046447 Camk2n1 ENSMUST00000050918 ENSMUSP00000060349 TRANSLATION protein_coding - CCDS38930.1 1 78.0 0.0 0.75 31.8 157.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000055296 Tmem245 ENSMUST00000107609 ENSMUSP00000103234 TRANSLATION protein_coding - CCDS38767.1 5 880.0 0.0 2.0 0.4 45.6 10.0 -4,-6 0.6283 6 6.0 ALTERNATIVE:2 ENSMUSG00000055296 Tmem245 ENSMUST00000125082 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055296 Tmem245 ENSMUST00000068792 ENSMUSP00000067421 TRANSLATION protein_coding - - 5 876.0 0.0 2.0 3.1 45.6 10.0 -4,-6 1.0 6 7.0 PRINCIPAL:2 ENSMUSG00000055296 Tmem245 ENSMUST00000155625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055296 Tmem245 ENSMUST00000132816 ENSMUSP00000117449 TRANSLATION protein_coding start - 5 471.0 0.0 0.0 0.0 45.6 7.0 -4,-7 0.0814 2 -2.0 MINOR ENSMUSG00000028955 Vamp3 ENSMUST00000155446 - NO_TRANSLATION retained_intron ENSMUSG00000028955 Vamp3 ENSMUST00000125205 - NO_TRANSLATION retained_intron ENSMUSG00000028955 Vamp3 ENSMUST00000030797 ENSMUSP00000030797 TRANSLATION protein_coding - CCDS18979.1 1 103.0 0.0 2.25 13.1 118.6 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000070637 Srarp ENSMUST00000094544 ENSMUSP00000092122 TRANSLATION protein_coding - CCDS51347.1 1 163.0 0.0 0.0 0.1 194.0 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074088 Snrnp40 ENSMUST00000105994 ENSMUSP00000101616 TRANSLATION protein_coding - CCDS38892.1 1 358.0 0.0 8.0 13.2 167.3 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000074088 Snrnp40 ENSMUST00000181560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074088 Snrnp40 ENSMUST00000180577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074088 Snrnp40 ENSMUST00000181161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028716 Pdzk1ip1 ENSMUST00000149245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028716 Pdzk1ip1 ENSMUST00000030488 ENSMUSP00000030488 TRANSLATION protein_coding - CCDS18487.1 1 114.0 0.0 1.0 3.9 112.7 2.0 -1,-3 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000028716 Pdzk1ip1 ENSMUST00000146578 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028716 Pdzk1ip1 ENSMUST00000171877 ENSMUSP00000128118 TRANSLATION protein_coding - CCDS51272.1 1 181.0 0.0 1.0 0.0 112.7 3.0 -2,-5 0.247 2 8.0 ALTERNATIVE:2 ENSMUSG00000028716 Pdzk1ip1 ENSMUST00000139710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028716 Pdzk1ip1 ENSMUST00000124491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028716 Pdzk1ip1 ENSMUST00000106548 ENSMUSP00000102158 TRANSLATION protein_coding - CCDS18487.1 1 114.0 0.0 1.0 3.9 112.7 2.0 -1,-3 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000028716 Pdzk1ip1 ENSMUST00000177647 ENSMUSP00000136049 TRANSLATION protein_coding - CCDS18487.1 3 114.0 0.0 1.0 3.9 112.7 2.0 -1,-3 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000037266 Rsrp1 ENSMUST00000078084 ENSMUSP00000077226 TRANSLATION protein_coding - CCDS51328.1 1 298.0 0.0 1.0 0.0 432.5 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000037266 Rsrp1 ENSMUST00000151178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037266 Rsrp1 ENSMUST00000149354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037266 Rsrp1 ENSMUST00000145364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037266 Rsrp1 ENSMUST00000154837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037266 Rsrp1 ENSMUST00000148900 - NO_TRANSLATION retained_intron ENSMUSG00000037266 Rsrp1 ENSMUST00000149003 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037266 Rsrp1 ENSMUST00000125679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028584 Lrrc38 ENSMUST00000052458 ENSMUSP00000053597 TRANSLATION protein_coding - CCDS51351.1 1 298.0 0.0 2.0 0.0 95.0 0.0 2,-3 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000036052 Dnajb5 ENSMUST00000123501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036052 Dnajb5 ENSMUST00000084662 ENSMUSP00000081712 TRANSLATION protein_coding - CCDS18084.1 1 348.0 0.0 2.6 24.5 247.9 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000036052 Dnajb5 ENSMUST00000142332 - NO_TRANSLATION retained_intron ENSMUSG00000036052 Dnajb5 ENSMUST00000153807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036052 Dnajb5 ENSMUST00000037872 ENSMUSP00000040451 TRANSLATION protein_coding - - 5 382.0 0.0 2.6 7.3 247.9 0.0 -4,-6 0.3416 8 13.072 MINOR ENSMUSG00000036052 Dnajb5 ENSMUST00000098112 ENSMUSP00000095716 TRANSLATION protein_coding - CCDS18084.1 1 348.0 0.0 2.6 24.5 247.9 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000036052 Dnajb5 ENSMUST00000107973 ENSMUSP00000103607 TRANSLATION protein_coding - CCDS18084.1 1 348.0 0.0 2.6 24.5 247.9 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000038192 Cer1 ENSMUST00000048430 ENSMUSP00000048607 TRANSLATION protein_coding - CCDS18295.1 1 272.0 0.0 0.4 0.0 99.8 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046862 Pramel12 ENSMUST00000037356 ENSMUSP00000041323 TRANSLATION protein_coding - CCDS38944.1 1 480.0 0.0 3.28 0.4 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046862 Pramel12 ENSMUST00000059790 ENSMUSP00000058676 TRANSLATION protein_coding - CCDS38944.1 1 480.0 0.0 3.28 0.4 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046862 Pramel12 ENSMUST00000132915 ENSMUSP00000122707 TRANSLATION protein_coding stop - 3 59.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0059 - -2.0 MINOR ENSMUSG00000046862 Pramel12 ENSMUST00000155157 ENSMUSP00000117878 TRANSLATION protein_coding stop - 2 194.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.0073 - -2.0 MINOR ENSMUSG00000046862 Pramel12 ENSMUST00000126398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040761 Spen ENSMUST00000144500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040761 Spen ENSMUST00000147227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040761 Spen ENSMUST00000105786 ENSMUSP00000101412 TRANSLATION protein_coding - CCDS38940.1 5 3643.0 0.0 9.5 0.0 277.9 0.0 -4,-5 1.0 46 8.0 PRINCIPAL:2 ENSMUSG00000040761 Spen ENSMUST00000078886 ENSMUSP00000077925 TRANSLATION protein_coding - CCDS84815.1 5 3620.0 0.0 9.5 0.0 277.9 0.0 -4,-5 0.6703 46 8.0 ALTERNATIVE:2 ENSMUSG00000040761 Spen ENSMUST00000152081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040761 Spen ENSMUST00000152411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038368 Focad ENSMUST00000107147 ENSMUSP00000102765 TRANSLATION protein_coding - - 1 204.0 0.0 0.0 0.0 305.1 0.0 -4,-5 0.0008 2 0.0 MINOR ENSMUSG00000038368 Focad ENSMUST00000130603 - NO_TRANSLATION retained_intron ENSMUSG00000038368 Focad ENSMUST00000144388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038368 Focad ENSMUST00000161058 - NO_TRANSLATION retained_intron ENSMUSG00000038368 Focad ENSMUST00000162039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038368 Focad ENSMUST00000159342 ENSMUSP00000124298 TRANSLATION protein_coding - - 1 1712.0 0.0 0.0 0.0 1192.7 0.0 -4,-5 0.2564 24 6.0 MINOR ENSMUSG00000038368 Focad ENSMUST00000097992 ENSMUSP00000095602 TRANSLATION protein_coding - CCDS38798.1 5 1798.0 0.0 0.0 6.2 1192.7 0.0 -4,-5 1.0 26 8.0 PRINCIPAL:1 ENSMUSG00000038368 Focad ENSMUST00000129967 - NO_TRANSLATION retained_intron ENSMUSG00000038368 Focad ENSMUST00000147527 - NO_TRANSLATION retained_intron ENSMUSG00000038368 Focad ENSMUST00000107148 - NO_TRANSLATION retained_intron ENSMUSG00000040928 S100pbp ENSMUST00000148112 - NO_TRANSLATION retained_intron ENSMUSG00000040928 S100pbp ENSMUST00000049081 ENSMUSP00000039820 TRANSLATION protein_coding - CCDS18684.1 1 396.0 0.0 0.0 0.4 634.1 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000040928 S100pbp ENSMUST00000122942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040928 S100pbp ENSMUST00000106061 ENSMUSP00000101676 TRANSLATION protein_coding - CCDS18684.1 1 396.0 0.0 0.0 0.4 634.1 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000040928 S100pbp ENSMUST00000117350 ENSMUSP00000113214 TRANSLATION protein_coding - - 1 371.0 0.0 0.0 0.0 488.7 0.0 -4,-5 0.0067 3 0.0 MINOR ENSMUSG00000040928 S100pbp ENSMUST00000126748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040928 S100pbp ENSMUST00000072431 ENSMUSP00000072258 TRANSLATION protein_coding - - 1 318.0 0.0 0.0 0.3 392.7 0.0 -4,-5 0.002 4 0.0 MINOR ENSMUSG00000040928 S100pbp ENSMUST00000142490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040928 S100pbp ENSMUST00000117497 ENSMUSP00000113084 TRANSLATION protein_coding stop - 5 327.0 0.0 0.0 0.0 264.4 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000040928 S100pbp ENSMUST00000151971 - NO_TRANSLATION retained_intron ENSMUSG00000040928 S100pbp ENSMUST00000106059 ENSMUSP00000101674 TRANSLATION protein_coding - CCDS84797.1 1 277.0 0.0 0.0 0.4 354.7 0.0 -4,-5 0.0409 3 0.0 MINOR ENSMUSG00000040928 S100pbp ENSMUST00000117965 ENSMUSP00000113920 TRANSLATION protein_coding stop - 5 327.0 0.0 0.0 0.0 264.4 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000040928 S100pbp ENSMUST00000137992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040928 S100pbp ENSMUST00000148920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035615 Frmpd1 ENSMUST00000134280 ENSMUSP00000118757 TRANSLATION protein_coding stop - 3 194.0 0.0 3.25 0.0 28.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035615 Frmpd1 ENSMUST00000044773 ENSMUSP00000047232 TRANSLATION protein_coding - CCDS38753.1 1 1549.0 0.0 9.18 0.0 95.2 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000035615 Frmpd1 ENSMUST00000107804 ENSMUSP00000103434 TRANSLATION protein_coding - CCDS38753.1 5 1549.0 0.0 9.18 0.0 95.2 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000029019 Nppb ENSMUST00000103231 ENSMUSP00000099521 TRANSLATION protein_coding - CCDS18926.1 1 121.0 0.0 0.4 0.4 55.1 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078597 Cyp4a12b ENSMUST00000094887 ENSMUSP00000092487 TRANSLATION protein_coding - CCDS18490.1 1 508.0 30.0 11.0 11.2 435.6 0.0 -2,-4 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000028370 Pappa ENSMUST00000084501 ENSMUSP00000081545 TRANSLATION protein_coding - CCDS18267.1 1 1624.0 4.0 2.1 5.7 190.4 0.0 4,-2 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000043872 Zmym1 ENSMUST00000152607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043872 Zmym1 ENSMUST00000124429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043872 Zmym1 ENSMUST00000106099 ENSMUSP00000101705 TRANSLATION protein_coding - - 1 885.0 8.0 0.6 0.0 111.9 0.0 -4,-1 0.875 8 14.0 PRINCIPAL:4 ENSMUSG00000043872 Zmym1 ENSMUST00000136186 ENSMUSP00000120772 TRANSLATION protein_coding stop - 3 83.0 4.0 0.6 0.0 26.0 0.0 -4,-1 0.0604 2 -2.0 MINOR ENSMUSG00000043872 Zmym1 ENSMUST00000140605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043872 Zmym1 ENSMUST00000106102 ENSMUSP00000101708 TRANSLATION protein_coding - CCDS18663.1 1 983.0 8.0 0.6 0.0 111.9 0.0 -4,-1 0.6547 8 14.0 ALTERNATIVE:2 ENSMUSG00000043872 Zmym1 ENSMUST00000055013 ENSMUSP00000050669 TRANSLATION protein_coding - CCDS18663.1 2 983.0 8.0 0.6 0.0 111.9 0.0 -4,-1 0.6547 8 14.0 ALTERNATIVE:2 ENSMUSG00000029022 Miip ENSMUST00000172710 ENSMUSP00000134085 TRANSLATION protein_coding - CCDS18923.2 5 387.0 0.0 0.0 0.1 472.7 0.0 -4,-7 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000029022 Miip ENSMUST00000141534 - NO_TRANSLATION retained_intron ENSMUSG00000029022 Miip ENSMUST00000174081 - NO_TRANSLATION retained_intron ENSMUSG00000029022 Miip ENSMUST00000156374 - NO_TRANSLATION retained_intron ENSMUSG00000029022 Miip ENSMUST00000141166 - NO_TRANSLATION retained_intron ENSMUSG00000029022 Miip ENSMUST00000173034 - NO_TRANSLATION retained_intron ENSMUSG00000029022 Miip ENSMUST00000030886 ENSMUSP00000030886 TRANSLATION protein_coding - CCDS18923.2 1 387.0 0.0 0.0 0.1 472.7 0.0 -4,-7 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000029022 Miip ENSMUST00000119975 ENSMUSP00000113897 TRANSLATION protein_coding - - 1 389.0 0.0 0.0 0.0 462.9 0.0 -4,-7 0.1147 - 1.334 ALTERNATIVE:2 ENSMUSG00000049122 Frmd3 ENSMUST00000154134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049122 Frmd3 ENSMUST00000084474 ENSMUSP00000081514 TRANSLATION protein_coding - CCDS38789.1 1 595.0 0.0 9.6 16.2 235.7 0.0 -4,-1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000049122 Frmd3 ENSMUST00000098006 ENSMUSP00000095615 TRANSLATION protein_coding - CCDS51212.1 1 554.0 0.0 9.6 3.8 235.7 0.0 -4,-1 0.4802 2 12.736 MINOR ENSMUSG00000028730 Cfap57 ENSMUST00000081921 ENSMUSP00000080592 TRANSLATION protein_coding - CCDS51286.1 5 1249.0 0.0 3.27 5.8 30.2 0.0 -4,-7 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000028730 Cfap57 ENSMUST00000071972 ENSMUSP00000071863 TRANSLATION protein_coding - CCDS51286.1 5 1249.0 0.0 3.27 5.8 30.2 0.0 -4,-7 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000070616 Gm13040 ENSMUST00000094521 ENSMUSP00000092098 TRANSLATION protein_coding - - 1 481.0 0.0 2.1 0.4 0.0 0.0 -3,-6 0.6543 - 6.0 PRINCIPAL:1 ENSMUSG00000048003 Catsper4 ENSMUST00000105878 ENSMUSP00000101504 TRANSLATION protein_coding - - 1 136.0 0.0 0.47 0.0 0.0 1.0 -4,-5 0.0024 1 0.0 MINOR ENSMUSG00000048003 Catsper4 ENSMUST00000055892 ENSMUSP00000051694 TRANSLATION protein_coding - CCDS18766.1 1 442.0 0.0 4.63 1.0 110.9 4.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000048003 Catsper4 ENSMUST00000169381 ENSMUSP00000131094 TRANSLATION protein_coding - CCDS51324.1 1 369.0 0.0 3.43 0.0 48.5 3.0 -4,-5 0.0122 3 5.856 MINOR ENSMUSG00000048003 Catsper4 ENSMUST00000130984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045268 Zfp691 ENSMUST00000179290 ENSMUSP00000136119 TRANSLATION protein_coding - CCDS18570.1 1 283.0 28.0 1.0 9.1 179.1 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000045268 Zfp691 ENSMUST00000154226 ENSMUSP00000115832 TRANSLATION protein_coding stop - 1 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045268 Zfp691 ENSMUST00000106355 ENSMUSP00000101962 TRANSLATION protein_coding - CCDS18570.1 1 283.0 28.0 1.0 9.1 179.1 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000045268 Zfp691 ENSMUST00000052715 ENSMUSP00000053013 TRANSLATION protein_coding - CCDS18570.1 1 283.0 28.0 1.0 9.1 179.1 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000028833 Ncdn ENSMUST00000127079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028833 Ncdn ENSMUST00000030637 ENSMUSP00000030637 TRANSLATION protein_coding - CCDS18659.1 1 729.0 0.0 0.0 10.3 880.8 0.0 -4,-5 1.0 28 9.0 PRINCIPAL:1 ENSMUSG00000028833 Ncdn ENSMUST00000106116 ENSMUSP00000101722 TRANSLATION protein_coding - CCDS18659.1 1 729.0 0.0 0.0 10.3 880.8 0.0 -4,-5 1.0 28 9.0 PRINCIPAL:1 ENSMUSG00000028696 Ipp ENSMUST00000030461 ENSMUSP00000030461 TRANSLATION protein_coding - CCDS38851.1 5 584.0 0.0 5.16 13.8 484.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028696 Ipp ENSMUST00000106479 ENSMUSP00000102088 TRANSLATION protein_coding - CCDS38851.1 1 584.0 0.0 5.16 13.8 484.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000100079 Ifnab ENSMUST00000071378 ENSMUSP00000071333 TRANSLATION protein_coding - CCDS18327.1 - 190.0 3.0 1.0 1.4 210.8 0.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000115115 Gm55960 ENSMUST00000226560 ENSMUSP00000154396 TRANSLATION protein_coding - - - 25.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000078686 Mup9 ENSMUST00000137025 - NO_TRANSLATION retained_intron ENSMUSG00000078686 Mup9 ENSMUST00000132461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078686 Mup9 ENSMUST00000122177 - NO_TRANSLATION retained_intron ENSMUSG00000078686 Mup9 ENSMUST00000127151 - NO_TRANSLATION retained_intron ENSMUSG00000078686 Mup9 ENSMUST00000132829 ENSMUSP00000139730 TRANSLATION protein_coding - - 5 94.0 0.0 2.83 0.0 72.6 0.0 -4,-5 0.0 - 1.74 MINOR ENSMUSG00000078686 Mup9 ENSMUST00000118759 ENSMUSP00000113461 TRANSLATION protein_coding - - 5 235.0 0.0 4.93 0.0 110.3 0.0 4,-1 0.126 - 7.94 ALTERNATIVE:2 ENSMUSG00000078686 Mup9 ENSMUST00000107506 ENSMUSP00000103130 TRANSLATION protein_coding - CCDS51187.2 1 180.0 0.0 4.96 0.0 110.3 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000078686 Mup9 ENSMUST00000122381 ENSMUSP00000113741 TRANSLATION protein_coding - CCDS51187.2 2 180.0 0.0 4.96 0.0 110.3 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000028847 Trappc3 ENSMUST00000126786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028847 Trappc3 ENSMUST00000030660 ENSMUSP00000030660 TRANSLATION protein_coding - CCDS18647.1 1 180.0 0.0 4.4 36.2 127.2 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000028383 Hsdl2 ENSMUST00000128792 ENSMUSP00000119139 TRANSLATION protein_coding stop - 2 149.0 17.0 4.248 0.0 56.5 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000028383 Hsdl2 ENSMUST00000030078 ENSMUSP00000030078 TRANSLATION protein_coding - CCDS38772.1 1 490.0 28.0 9.43 0.0 210.4 0.0 -4,-6 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000028383 Hsdl2 ENSMUST00000107528 ENSMUSP00000103152 TRANSLATION protein_coding - CCDS80104.1 2 370.0 13.0 6.35 0.0 118.6 0.0 -4,-2 0.0099 12 0.492 MINOR ENSMUSG00000028524 Sgip1 ENSMUST00000140289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028524 Sgip1 ENSMUST00000080728 ENSMUSP00000079553 TRANSLATION protein_coding - CCDS18404.1 1 806.0 0.0 6.08 5.4 241.5 0.0 -4,-5 0.5995 25 7.396 MINOR ENSMUSG00000028524 Sgip1 ENSMUST00000136164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028524 Sgip1 ENSMUST00000142430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028524 Sgip1 ENSMUST00000140676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028524 Sgip1 ENSMUST00000183855 ENSMUSP00000139337 TRANSLATION nonsense_mediated_decay - - 2 188.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028524 Sgip1 ENSMUST00000106882 ENSMUSP00000102495 TRANSLATION protein_coding - - 5 826.0 0.0 6.08 6.3 241.5 0.0 -4,-5 0.5713 25 7.684 MINOR ENSMUSG00000028524 Sgip1 ENSMUST00000097948 - NO_TRANSLATION retained_intron ENSMUSG00000028524 Sgip1 ENSMUST00000131431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028524 Sgip1 ENSMUST00000141624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028524 Sgip1 ENSMUST00000137592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028524 Sgip1 ENSMUST00000066824 ENSMUSP00000063712 TRANSLATION protein_coding - CCDS71429.1 1 659.0 0.0 6.08 13.6 241.5 0.0 -4,-5 1.0 15 10.0 PRINCIPAL:4 ENSMUSG00000028524 Sgip1 ENSMUST00000149547 ENSMUSP00000122556 TRANSLATION protein_coding start - 5 575.0 0.0 6.08 0.0 241.5 0.0 -4,-5 0.0368 14 -2.0 MINOR ENSMUSG00000028524 Sgip1 ENSMUST00000156596 ENSMUSP00000115075 TRANSLATION protein_coding stop - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028524 Sgip1 ENSMUST00000072481 ENSMUSP00000072301 TRANSLATION protein_coding - CCDS71430.1 1 639.0 0.0 6.08 13.6 241.5 0.0 -4,-5 0.9757 15 10.0 ALTERNATIVE:1 ENSMUSG00000028798 Eif3i ENSMUST00000136843 - NO_TRANSLATION retained_intron ENSMUSG00000028798 Eif3i ENSMUST00000155428 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028798 Eif3i ENSMUST00000143384 - NO_TRANSLATION retained_intron ENSMUSG00000028798 Eif3i ENSMUST00000135055 ENSMUSP00000120776 TRANSLATION protein_coding stop - 2 165.0 0.0 4.25 0.0 22.1 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000028798 Eif3i ENSMUST00000102593 ENSMUSP00000099653 TRANSLATION protein_coding - CCDS18698.1 1 325.0 0.0 9.25 30.0 66.4 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000028483 Snapc3 ENSMUST00000159518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028483 Snapc3 ENSMUST00000143533 ENSMUSP00000123793 TRANSLATION nonsense_mediated_decay - CCDS38792.1 1 407.0 4.0 0.6 7.4 262.1 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000028483 Snapc3 ENSMUST00000030206 ENSMUSP00000030206 TRANSLATION protein_coding - CCDS38792.1 1 407.0 4.0 0.6 7.4 262.1 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000028483 Snapc3 ENSMUST00000071544 ENSMUSP00000102842 TRANSLATION protein_coding - - 1 269.0 0.0 0.0 0.0 58.4 0.0 -4,-5 0.0004 1 0.0 MINOR ENSMUSG00000028483 Snapc3 ENSMUST00000123262 ENSMUSP00000124038 TRANSLATION nonsense_mediated_decay - CCDS38792.1 1 407.0 4.0 0.6 7.4 262.1 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000028483 Snapc3 ENSMUST00000137512 ENSMUSP00000124468 TRANSLATION nonsense_mediated_decay - - 1 131.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028483 Snapc3 ENSMUST00000160742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028483 Snapc3 ENSMUST00000124856 ENSMUSP00000124181 TRANSLATION nonsense_mediated_decay - CCDS38792.1 1 407.0 4.0 0.6 7.4 262.1 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000028483 Snapc3 ENSMUST00000130676 - NO_TRANSLATION retained_intron ENSMUSG00000096333 Gm13871 ENSMUST00000107319 ENSMUSP00000102940 TRANSLATION protein_coding - CCDS51209.1 1 360.0 0.0 1.6 0.0 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096333 Gm13871 ENSMUST00000107318 ENSMUSP00000102939 TRANSLATION protein_coding - - 5 232.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0218 - 3.0 MINOR ENSMUSG00000040569 Slc26a7 ENSMUST00000149633 ENSMUSP00000116157 TRANSLATION protein_coding stop - 3 200.0 0.0 2.5 0.0 105.2 4.0 -4,-7 0.0037 1 -2.0 MINOR ENSMUSG00000040569 Slc26a7 ENSMUST00000143105 ENSMUSP00000122870 TRANSLATION protein_coding stop - 3 99.0 0.0 1.2 0.0 41.0 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000040569 Slc26a7 ENSMUST00000042221 ENSMUSP00000041789 TRANSLATION protein_coding - CCDS17979.1 1 656.0 0.0 7.78 20.5 370.9 8.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000040569 Slc26a7 ENSMUST00000138042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035649 Zcchc7 ENSMUST00000107824 ENSMUSP00000103454 TRANSLATION protein_coding - CCDS18127.2 5 541.0 16.0 0.55 5.3 44.8 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000035649 Zcchc7 ENSMUST00000107823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035649 Zcchc7 ENSMUST00000143385 ENSMUSP00000131178 TRANSLATION protein_coding stop - 2 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035649 Zcchc7 ENSMUST00000126968 ENSMUSP00000125979 TRANSLATION nonsense_mediated_decay start - 2 77.0 4.0 0.3 0.0 22.5 0.0 -4,-5 0.0014 2 -2.0 MINOR ENSMUSG00000035649 Zcchc7 ENSMUST00000067521 - NO_TRANSLATION retained_intron ENSMUSG00000035649 Zcchc7 ENSMUST00000142714 ENSMUSP00000124542 TRANSLATION nonsense_mediated_decay - - 2 261.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000035649 Zcchc7 ENSMUST00000154121 ENSMUSP00000131821 TRANSLATION protein_coding stop - 5 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035649 Zcchc7 ENSMUST00000144436 - NO_TRANSLATION retained_intron ENSMUSG00000035649 Zcchc7 ENSMUST00000147272 ENSMUSP00000126678 TRANSLATION protein_coding - - 2 220.0 4.0 0.3 0.0 22.5 0.0 -4,-6 0.0014 2 6.282 MINOR ENSMUSG00000094271 Gm13290 ENSMUST00000177806 ENSMUSP00000136603 TRANSLATION protein_coding - CCDS57283.1 - 182.0 0.0 0.4 0.0 94.6 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096351 Samd11 ENSMUST00000220228 ENSMUSP00000151261 TRANSLATION protein_coding stop - 3 245.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0018 - -2.0 MINOR ENSMUSG00000096351 Samd11 ENSMUST00000219866 - NO_TRANSLATION retained_intron ENSMUSG00000096351 Samd11 ENSMUST00000219393 ENSMUSP00000151817 TRANSLATION protein_coding stop - 3 136.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000096351 Samd11 ENSMUST00000179919 ENSMUSP00000136611 TRANSLATION protein_coding - CCDS57323.1 1 552.0 0.0 1.6 0.0 41.7 0.0 -4,-5 0.5887 - 8.0 ALTERNATIVE:2 ENSMUSG00000096351 Samd11 ENSMUST00000218230 - NO_TRANSLATION retained_intron ENSMUSG00000096351 Samd11 ENSMUST00000217934 ENSMUSP00000151756 TRANSLATION protein_coding - - 1 542.0 0.0 1.6 0.4 41.7 0.0 -4,-5 0.7947 - 8.0 PRINCIPAL:4 ENSMUSG00000096351 Samd11 ENSMUST00000220030 - NO_TRANSLATION retained_intron ENSMUSG00000096351 Samd11 ENSMUST00000219310 - NO_TRANSLATION retained_intron ENSMUSG00000096351 Samd11 ENSMUST00000218788 ENSMUSP00000151442 TRANSLATION protein_coding - - 1 542.0 0.0 1.6 0.4 41.7 0.0 -4,-5 0.7947 - 8.0 PRINCIPAL:4 ENSMUSG00000028678 Kif2c ENSMUST00000142205 - NO_TRANSLATION retained_intron ENSMUSG00000028678 Kif2c ENSMUST00000106436 ENSMUSP00000102044 TRANSLATION protein_coding - CCDS71452.1 5 670.0 11.0 10.0 5.5 311.0 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:2 ENSMUSG00000028678 Kif2c ENSMUST00000065896 ENSMUSP00000064261 TRANSLATION protein_coding - CCDS18531.1 1 721.0 11.0 10.0 3.7 311.0 0.0 -4,-7 0.6521 10 15.2 ALTERNATIVE:2 ENSMUSG00000028678 Kif2c ENSMUST00000148918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028678 Kif2c ENSMUST00000141675 - NO_TRANSLATION retained_intron ENSMUSG00000028678 Kif2c ENSMUST00000132868 - NO_TRANSLATION retained_intron ENSMUSG00000028678 Kif2c ENSMUST00000142138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028678 Kif2c ENSMUST00000153953 ENSMUSP00000122655 TRANSLATION protein_coding stop - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000048899 Rimkla ENSMUST00000049994 ENSMUSP00000058996 TRANSLATION protein_coding - CCDS18583.1 1 380.0 18.0 4.75 1.0 0.0 0.0 -4,-6 0.8738 8 12.0 PRINCIPAL:1 ENSMUSG00000048899 Rimkla ENSMUST00000126728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028229 Rmdn1 ENSMUST00000029888 ENSMUSP00000029888 TRANSLATION protein_coding - CCDS17992.1 1 305.0 0.0 6.63 7.4 0.0 0.0 -4,0 1.0 8 8.0 PRINCIPAL:1 ENSMUSG00000028229 Rmdn1 ENSMUST00000108253 ENSMUSP00000103888 TRANSLATION protein_coding - - 1 194.0 0.0 3.55 0.0 0.0 0.0 -4,0 0.0111 5 0.0 MINOR ENSMUSG00000028369 Svep1 ENSMUST00000042850 ENSMUSP00000045856 TRANSLATION protein_coding - CCDS18209.1 1 3567.0 8.0 22.141 8.8 1993.1 0.0 3,-2 1.0 36 21.0 PRINCIPAL:1 ENSMUSG00000028369 Svep1 ENSMUST00000146329 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028369 Svep1 ENSMUST00000149152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028369 Svep1 ENSMUST00000128783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028465 Tln1 ENSMUST00000134623 ENSMUSP00000119956 TRANSLATION protein_coding start/stop - 5 122.0 0.0 3.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028465 Tln1 ENSMUST00000126078 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028465 Tln1 ENSMUST00000125509 ENSMUSP00000115681 TRANSLATION protein_coding start/stop - 5 279.0 0.0 7.16 0.0 195.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028465 Tln1 ENSMUST00000130670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028465 Tln1 ENSMUST00000127262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028465 Tln1 ENSMUST00000130353 ENSMUSP00000119441 TRANSLATION protein_coding stop - 5 241.0 0.0 5.75 0.0 246.9 0.0 -4,-7 0.0 12 -2.0 MINOR ENSMUSG00000028465 Tln1 ENSMUST00000030187 ENSMUSP00000030187 TRANSLATION protein_coding - CCDS18101.1 1 2541.0 0.0 57.14 35.7 888.0 0.0 -4,-7 1.0 94 16.0 PRINCIPAL:1 ENSMUSG00000028465 Tln1 ENSMUST00000123985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023247 Guca2a ENSMUST00000024015 ENSMUSP00000024015 TRANSLATION protein_coding - CCDS18586.1 1 116.0 0.0 1.9 8.0 116.2 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066324 Bpnt2 ENSMUST00000084949 ENSMUSP00000082013 TRANSLATION protein_coding - CCDS17947.1 1 356.0 14.0 5.0 10.4 137.4 0.0 -1,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000063077 Kif1b ENSMUST00000055647 ENSMUSP00000061472 TRANSLATION protein_coding - CCDS18956.1 1 1770.0 11.0 14.5 18.2 854.4 0.0 -4,-2 0.8689 16 17.812 MINOR ENSMUSG00000063077 Kif1b ENSMUST00000123593 - NO_TRANSLATION retained_intron ENSMUSG00000063077 Kif1b ENSMUST00000030806 ENSMUSP00000030806 TRANSLATION protein_coding - CCDS18957.1 1 1150.0 11.0 14.5 8.5 630.9 0.0 -4,-2 0.3575 11 13.612 MINOR ENSMUSG00000063077 Kif1b ENSMUST00000150230 - NO_TRANSLATION retained_intron ENSMUSG00000063077 Kif1b ENSMUST00000140749 - NO_TRANSLATION retained_intron ENSMUSG00000063077 Kif1b ENSMUST00000060537 ENSMUSP00000056754 TRANSLATION protein_coding - CCDS71521.1 1 1816.0 11.0 14.566 17.7 922.0 0.0 -4,-2 1.0 16 21.884 PRINCIPAL:1 ENSMUSG00000063077 Kif1b ENSMUST00000133526 - NO_TRANSLATION retained_intron ENSMUSG00000063077 Kif1b ENSMUST00000238956 ENSMUSP00000158941 TRANSLATION protein_coding - - - 1883.0 11.0 14.566 2.0 922.0 0.0 -4,-2 0.3274 16 18.232 MINOR ENSMUSG00000063077 Kif1b ENSMUST00000150853 - NO_TRANSLATION retained_intron ENSMUSG00000063077 Kif1b ENSMUST00000139123 ENSMUSP00000120076 TRANSLATION protein_coding start - 1 495.0 0.0 0.0 0.0 118.4 0.0 -4,-1 0.0026 7 -2.0 MINOR ENSMUSG00000063077 Kif1b ENSMUST00000154411 - NO_TRANSLATION retained_intron ENSMUSG00000063077 Kif1b ENSMUST00000132072 - NO_TRANSLATION retained_intron ENSMUSG00000028619 Tceanc2 ENSMUST00000058585 ENSMUSP00000054142 TRANSLATION protein_coding - CCDS18431.1 5 207.0 0.0 3.55 23.9 46.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028619 Tceanc2 ENSMUST00000129220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028619 Tceanc2 ENSMUST00000147375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028619 Tceanc2 ENSMUST00000030362 ENSMUSP00000030362 TRANSLATION protein_coding - CCDS18431.1 3 207.0 0.0 3.55 23.9 46.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028619 Tceanc2 ENSMUST00000057043 ENSMUSP00000059741 TRANSLATION protein_coding - CCDS18431.1 1 207.0 0.0 3.55 23.9 46.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028619 Tceanc2 ENSMUST00000132526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028619 Tceanc2 ENSMUST00000141165 ENSMUSP00000115005 TRANSLATION protein_coding stop - 5 179.0 0.0 2.8 0.0 46.5 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000028619 Tceanc2 ENSMUST00000131474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028619 Tceanc2 ENSMUST00000127720 ENSMUSP00000116632 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028850 Gpatch3 ENSMUST00000154648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028850 Gpatch3 ENSMUST00000030662 ENSMUSP00000030662 TRANSLATION protein_coding - CCDS18752.1 1 525.0 0.0 0.0 4.3 32.4 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000043385 Or2k2 ENSMUST00000216719 ENSMUSP00000150848 TRANSLATION protein_coding - CCDS18213.1 5 313.0 0.0 1.0 2.5 170.6 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000043385 Or2k2 ENSMUST00000059608 ENSMUSP00000062002 TRANSLATION protein_coding - CCDS18213.1 - 313.0 0.0 1.0 2.5 170.6 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000028906 Epb41 ENSMUST00000131953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028906 Epb41 ENSMUST00000141291 ENSMUSP00000120236 TRANSLATION protein_coding - - 5 767.0 0.0 7.5 0.0 369.3 0.0 -4,-5 0.093 23 7.4 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000105975 ENSMUSP00000101595 TRANSLATION protein_coding - - 5 869.0 0.0 7.5 0.0 539.3 0.0 -4,-5 0.1079 24 8.0 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000212761 ENSMUSP00000148515 TRANSLATION protein_coding start - 1 476.0 0.0 5.5 0.0 301.0 0.0 -4,-6 0.0 13 -2.0 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000238852 - NO_TRANSLATION retained_intron ENSMUSG00000028906 Epb41 ENSMUST00000155990 ENSMUSP00000116599 TRANSLATION protein_coding start - 3 197.0 0.0 0.0 0.0 170.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000084253 ENSMUSP00000081274 TRANSLATION protein_coding - CCDS51317.1 1 804.0 0.0 7.5 4.9 534.6 0.0 -4,-5 1.0 21 10.0 PRINCIPAL:1 ENSMUSG00000028906 Epb41 ENSMUST00000105970 ENSMUSP00000101590 TRANSLATION protein_coding - - 5 639.0 0.0 7.5 0.0 469.7 0.0 -4,-5 0.0997 20 7.4 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000105981 ENSMUSP00000101601 TRANSLATION protein_coding - CCDS18717.1 5 858.0 0.0 7.5 2.7 539.3 0.0 -4,-5 0.6672 24 8.872 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000105972 ENSMUSP00000101592 TRANSLATION protein_coding - CCDS18717.1 5 858.0 0.0 7.5 2.7 539.3 0.0 -4,-5 0.6672 24 8.872 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000135579 ENSMUSP00000121764 TRANSLATION protein_coding start - 1 375.0 0.0 0.0 0.0 246.3 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000144754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028906 Epb41 ENSMUST00000151746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028906 Epb41 ENSMUST00000030739 ENSMUSP00000030739 TRANSLATION protein_coding - CCDS18717.1 5 858.0 0.0 7.5 2.7 539.3 0.0 -4,-5 0.6672 24 8.872 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000146021 ENSMUSP00000158714 TRANSLATION protein_coding - - 1 594.0 0.0 7.5 0.0 534.6 0.0 -4,-5 0.081 17 8.0 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000137846 ENSMUSP00000123623 TRANSLATION protein_coding start - 5 667.0 0.0 7.5 0.0 539.3 0.0 -4,-5 0.0714 20 -2.0 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000136761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028906 Epb41 ENSMUST00000146443 ENSMUSP00000122234 TRANSLATION protein_coding start - 5 250.0 0.0 0.0 0.0 251.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000028906 Epb41 ENSMUST00000054917 ENSMUSP00000060375 TRANSLATION protein_coding - CCDS51317.1 5 804.0 0.0 7.5 4.9 534.6 0.0 -4,-5 1.0 21 10.0 PRINCIPAL:1 ENSMUSG00000028906 Epb41 ENSMUST00000105974 ENSMUSP00000101594 TRANSLATION protein_coding - - 5 769.0 0.0 6.5 0.0 471.0 0.0 -4,-5 0.0601 20 5.402 MINOR ENSMUSG00000037622 Wdtc1 ENSMUST00000043305 ENSMUSP00000040647 TRANSLATION protein_coding - CCDS18746.1 1 677.0 0.0 5.722 12.5 67.3 0.0 -4,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000037622 Wdtc1 ENSMUST00000105906 ENSMUSP00000101526 TRANSLATION protein_coding - - 5 615.0 0.0 4.322 3.2 28.5 0.0 -4,-2 0.0887 6 6.309 MINOR ENSMUSG00000037622 Wdtc1 ENSMUST00000145426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037622 Wdtc1 ENSMUST00000140976 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037622 Wdtc1 ENSMUST00000135929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029001 Fbxo44 ENSMUST00000167160 ENSMUSP00000126551 TRANSLATION protein_coding - CCDS18934.1 5 255.0 0.0 7.16 10.7 275.8 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000029001 Fbxo44 ENSMUST00000172472 ENSMUSP00000133966 TRANSLATION nonsense_mediated_decay - - 5 133.0 0.0 3.15 0.0 69.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029001 Fbxo44 ENSMUST00000173352 ENSMUSP00000134624 TRANSLATION protein_coding stop - 3 254.0 0.0 5.33 0.0 184.7 0.0 -4,-5 0.0361 3 -2.0 MINOR ENSMUSG00000029001 Fbxo44 ENSMUST00000122913 ENSMUSP00000120874 TRANSLATION nonsense_mediated_decay - - 5 117.0 0.0 2.65 0.0 30.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029001 Fbxo44 ENSMUST00000129253 ENSMUSP00000117013 TRANSLATION nonsense_mediated_decay - - 1 218.0 0.0 5.66 0.0 194.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029001 Fbxo44 ENSMUST00000153703 ENSMUSP00000115937 TRANSLATION nonsense_mediated_decay start - 3 144.0 0.0 4.66 0.0 164.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000029001 Fbxo44 ENSMUST00000057907 ENSMUSP00000054022 TRANSLATION protein_coding - CCDS18934.1 1 255.0 0.0 7.16 10.7 275.8 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000029001 Fbxo44 ENSMUST00000151246 ENSMUSP00000114571 TRANSLATION protein_coding stop - 5 232.0 0.0 6.41 0.0 244.2 0.0 -4,-5 0.002 3 -2.0 MINOR ENSMUSG00000029001 Fbxo44 ENSMUST00000105705 ENSMUSP00000101330 TRANSLATION protein_coding - CCDS51377.1 2 224.0 0.0 2.75 3.0 69.6 0.0 -4,-5 0.0825 1 0.618 MINOR ENSMUSG00000029001 Fbxo44 ENSMUST00000151127 ENSMUSP00000134064 TRANSLATION protein_coding - - 1 276.0 0.0 5.726 0.0 193.6 0.0 -4,-5 0.0 3 4.2 MINOR ENSMUSG00000039740 Alg2 ENSMUST00000044148 ENSMUSP00000043580 TRANSLATION protein_coding - CCDS18161.1 1 415.0 19.0 4.25 5.6 121.8 0.0 -4,-1 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000039740 Alg2 ENSMUST00000143104 ENSMUSP00000121934 TRANSLATION protein_coding start/stop - 2 177.0 6.0 1.0 0.0 36.4 0.0 -4,0 0.0 7 -2.0 MINOR ENSMUSG00000039740 Alg2 ENSMUST00000136912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000115466 Vmn1r3 ENSMUST00000105159 ENSMUSP00000100790 TRANSLATION protein_coding - CCDS51108.1 - 306.0 0.0 0.2 0.4 117.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036241 Ube2r2 ENSMUST00000129874 - NO_TRANSLATION retained_intron ENSMUSG00000036241 Ube2r2 ENSMUST00000040008 ENSMUSP00000038813 TRANSLATION protein_coding - CCDS18057.1 1 238.0 0.0 4.55 24.1 150.4 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036241 Ube2r2 ENSMUST00000123642 - NO_TRANSLATION retained_intron ENSMUSG00000073758 Sh3d21 ENSMUST00000142891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073758 Sh3d21 ENSMUST00000152402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073758 Sh3d21 ENSMUST00000094760 ENSMUSP00000092352 TRANSLATION protein_coding - CCDS18644.1 1 549.0 0.0 2.3 0.1 57.1 0.0 -4,-7 0.0192 9 1.806 MINOR ENSMUSG00000073758 Sh3d21 ENSMUST00000097891 ENSMUSP00000095501 TRANSLATION protein_coding - CCDS51301.1 1 665.0 0.0 4.748 0.0 145.4 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000073758 Sh3d21 ENSMUST00000141638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041272 Tox ENSMUST00000039987 ENSMUSP00000037966 TRANSLATION protein_coding - CCDS17953.1 1 526.0 0.0 1.75 21.8 63.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000041272 Tox ENSMUST00000125974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041272 Tox ENSMUST00000150082 - NO_TRANSLATION retained_intron ENSMUSG00000041272 Tox ENSMUST00000147657 - NO_TRANSLATION retained_intron ENSMUSG00000003282 Plag1 ENSMUST00000147035 - NO_TRANSLATION retained_intron ENSMUSG00000003282 Plag1 ENSMUST00000137439 ENSMUSP00000117532 TRANSLATION nonsense_mediated_decay - - 2 43.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000003282 Plag1 ENSMUST00000003369 ENSMUSP00000003369 TRANSLATION protein_coding - CCDS17941.1 1 499.0 27.0 0.76 24.9 60.2 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000003282 Plag1 ENSMUST00000151543 ENSMUSP00000119937 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000040478 Prdm13 ENSMUST00000095141 ENSMUSP00000092761 TRANSLATION protein_coding - CCDS38699.1 2 754.0 16.0 0.0 0.1 79.3 0.0 -4,-7 0.2796 - 8.0 ALTERNATIVE:2 ENSMUSG00000040478 Prdm13 ENSMUST00000139255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040478 Prdm13 ENSMUST00000076206 ENSMUSP00000075562 TRANSLATION protein_coding - - 2 706.0 16.0 0.0 0.0 79.3 0.0 -4,-7 0.7714 - 8.0 PRINCIPAL:2 ENSMUSG00000040478 Prdm13 ENSMUST00000144160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040478 Prdm13 ENSMUST00000139568 - NO_TRANSLATION retained_intron ENSMUSG00000040478 Prdm13 ENSMUST00000149516 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023286 Ube2j2 ENSMUST00000124092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023286 Ube2j2 ENSMUST00000166489 ENSMUSP00000127712 TRANSLATION protein_coding - CCDS19051.1 1 259.0 0.0 4.87 34.9 66.5 1.0 -4,-7 1.0 4 15.862 PRINCIPAL:1 ENSMUSG00000023286 Ube2j2 ENSMUST00000150846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023286 Ube2j2 ENSMUST00000024056 ENSMUSP00000024056 TRANSLATION protein_coding - CCDS19050.1 1 271.0 0.0 4.87 0.1 66.5 1.0 -4,-7 0.1969 4 11.862 MINOR ENSMUSG00000023286 Ube2j2 ENSMUST00000138218 - NO_TRANSLATION retained_intron ENSMUSG00000023286 Ube2j2 ENSMUST00000152536 ENSMUSP00000114235 TRANSLATION protein_coding stop - 5 120.0 0.0 3.21 0.0 43.0 0.0 -4,-6 0.0008 3 -2.0 MINOR ENSMUSG00000023286 Ube2j2 ENSMUST00000118192 ENSMUSP00000112785 TRANSLATION protein_coding - CCDS71536.1 5 232.0 0.0 4.12 0.7 68.1 1.0 -4,-7 0.104 2 10.5 MINOR ENSMUSG00000023286 Ube2j2 ENSMUST00000136492 ENSMUSP00000120855 TRANSLATION protein_coding stop - 2 35.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000023286 Ube2j2 ENSMUST00000103175 ENSMUSP00000099464 TRANSLATION protein_coding - CCDS19051.1 1 259.0 0.0 4.87 34.9 66.5 1.0 -4,-7 1.0 4 15.862 PRINCIPAL:1 ENSMUSG00000023286 Ube2j2 ENSMUST00000105583 ENSMUSP00000101208 TRANSLATION protein_coding - CCDS19050.1 1 271.0 0.0 4.87 0.1 66.5 1.0 -4,-7 0.1969 4 11.862 MINOR ENSMUSG00000023286 Ube2j2 ENSMUST00000105581 ENSMUSP00000101206 TRANSLATION protein_coding - CCDS19051.1 1 259.0 0.0 4.87 34.9 66.5 1.0 -4,-7 1.0 4 15.862 PRINCIPAL:1 ENSMUSG00000023286 Ube2j2 ENSMUST00000151892 - NO_TRANSLATION retained_intron ENSMUSG00000023286 Ube2j2 ENSMUST00000105582 ENSMUSP00000101207 TRANSLATION protein_coding - CCDS19050.1 1 271.0 0.0 4.87 0.1 66.5 1.0 -4,-7 0.1969 4 11.862 MINOR ENSMUSG00000039809 Gabbr2 ENSMUST00000205643 ENSMUSP00000146296 TRANSLATION protein_coding start/stop - 5 183.0 0.0 3.4 0.0 121.4 7.0 -2,-6 0.0032 1 -2.0 MINOR ENSMUSG00000039809 Gabbr2 ENSMUST00000107749 ENSMUSP00000103378 TRANSLATION protein_coding - CCDS38758.1 2 940.0 0.0 16.9 0.1 385.8 10.0 0,-2 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000039809 Gabbr2 ENSMUST00000206773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039809 Gabbr2 ENSMUST00000129328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039577 Nphp4 ENSMUST00000081393 ENSMUSP00000080128 TRANSLATION protein_coding - CCDS38985.1 1 1425.0 0.0 0.0 0.4 0.0 0.0 -4,-2 1.0 12 0.0 PRINCIPAL:1 ENSMUSG00000039577 Nphp4 ENSMUST00000056567 ENSMUSP00000049920 TRANSLATION protein_coding - CCDS38985.1 1 1425.0 0.0 0.0 0.4 0.0 0.0 -4,-2 1.0 12 0.0 PRINCIPAL:1 ENSMUSG00000039577 Nphp4 ENSMUST00000153759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039577 Nphp4 ENSMUST00000123635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039577 Nphp4 ENSMUST00000142027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039577 Nphp4 ENSMUST00000146223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032870 Smap2 ENSMUST00000043200 ENSMUSP00000035800 TRANSLATION protein_coding - CCDS18598.1 1 428.0 4.0 3.8 20.2 141.0 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000032870 Smap2 ENSMUST00000151615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046694 Tent5b ENSMUST00000051676 ENSMUSP00000056015 TRANSLATION protein_coding - CCDS18748.1 1 427.0 3.0 1.8 7.1 494.9 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000059482 Cfap418 ENSMUST00000156124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059482 Cfap418 ENSMUST00000101504 ENSMUSP00000103966 TRANSLATION protein_coding - - 5 210.0 0.0 2.75 9.9 187.1 0.0 -4,-5 0.7567 5 11.0 ALTERNATIVE:1 ENSMUSG00000059482 Cfap418 ENSMUST00000131437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059482 Cfap418 ENSMUST00000142026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059482 Cfap418 ENSMUST00000080517 ENSMUSP00000079361 TRANSLATION protein_coding - CCDS17961.1 1 209.0 0.0 2.75 9.9 192.7 0.0 -4,-5 1.0 6 11.0 PRINCIPAL:3 ENSMUSG00000078735 Il11ra2 ENSMUST00000238770 ENSMUSP00000158819 TRANSLATION protein_coding - CCDS38735.1 - 432.0 0.0 6.515 0.4 0.0 1.0 1,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078735 Il11ra2 ENSMUST00000108006 ENSMUSP00000103641 TRANSLATION protein_coding - CCDS38735.1 1 432.0 0.0 6.515 0.4 0.0 1.0 1,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028298 Cga ENSMUST00000029975 ENSMUSP00000029975 TRANSLATION protein_coding - CCDS18035.1 1 120.0 0.0 1.75 22.8 177.0 0.0 2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028298 Cga ENSMUST00000135871 ENSMUSP00000119152 TRANSLATION protein_coding stop - 5 117.0 0.0 1.75 22.8 169.9 0.0 2,-2 0.7832 - -2.0 MINOR ENSMUSG00000028298 Cga ENSMUST00000108130 ENSMUSP00000103765 TRANSLATION protein_coding - CCDS18035.1 5 120.0 0.0 1.75 22.8 177.0 0.0 2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028218 Cibar1 ENSMUST00000177837 ENSMUSP00000135961 TRANSLATION protein_coding - - 5 355.0 0.0 6.0 0.0 353.4 0.0 -4,-7 0.1871 3 8.0 ALTERNATIVE:2 ENSMUSG00000028218 Cibar1 ENSMUST00000087052 ENSMUSP00000084284 TRANSLATION protein_coding - CCDS80077.1 1 351.0 0.0 6.0 0.0 349.1 0.0 -4,-7 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000028218 Cibar1 ENSMUST00000108285 ENSMUSP00000103920 TRANSLATION protein_coding - CCDS51123.1 5 355.0 0.0 6.0 0.0 354.9 0.0 -4,-7 0.6111 4 8.0 ALTERNATIVE:2 ENSMUSG00000028218 Cibar1 ENSMUST00000152219 - NO_TRANSLATION retained_intron ENSMUSG00000028218 Cibar1 ENSMUST00000154416 ENSMUSP00000120369 TRANSLATION protein_coding start/stop - 3 216.0 0.0 5.0025 0.0 304.9 0.0 -4,-7 0.0055 1 -2.0 MINOR ENSMUSG00000028218 Cibar1 ENSMUST00000126012 ENSMUSP00000133923 TRANSLATION nonsense_mediated_decay start - 5 141.0 0.0 1.5 0.0 127.1 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000028218 Cibar1 ENSMUST00000126808 - NO_TRANSLATION retained_intron ENSMUSG00000028218 Cibar1 ENSMUST00000172728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110067 6330411D24Rik ENSMUST00000211105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110067 6330411D24Rik ENSMUST00000238915 ENSMUSP00000158956 TRANSLATION protein_coding stop - - 83.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.5842 - -2.0 PRINCIPAL:1 ENSMUSG00000043003 Rasef ENSMUST00000102837 ENSMUSP00000099901 TRANSLATION protein_coding - - 1 555.0 22.0 3.766 3.1 169.9 0.0 -4,-5 0.5937 10 13.33 MINOR ENSMUSG00000043003 Rasef ENSMUST00000222414 ENSMUSP00000152127 TRANSLATION protein_coding - - 5 708.0 27.0 3.766 0.4 208.8 0.0 -4,-5 0.8594 15 18.0 PRINCIPAL:1 ENSMUSG00000043003 Rasef ENSMUST00000058292 ENSMUSP00000062771 TRANSLATION protein_coding - CCDS18281.1 5 627.0 22.0 3.766 0.0 169.9 0.0 -4,-7 0.1744 12 12.33 MINOR ENSMUSG00000028451 1700022I11Rik ENSMUST00000139127 ENSMUSP00000116415 TRANSLATION nonsense_mediated_decay - - 2 78.0 2.0 0.0 0.0 0.0 0.0 -4,-2 0.0495 - -2.0 MINOR ENSMUSG00000028451 1700022I11Rik ENSMUST00000030163 ENSMUSP00000030163 TRANSLATION protein_coding - CCDS51160.1 1 1183.0 2.0 0.0 0.0 0.0 0.0 -4,-2 0.9842 - 2.0 PRINCIPAL:1 ENSMUSG00000028451 1700022I11Rik ENSMUST00000189414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028451 1700022I11Rik ENSMUST00000185904 ENSMUSP00000140492 TRANSLATION protein_coding stop - 5 150.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0308 - -2.0 MINOR ENSMUSG00000028451 1700022I11Rik ENSMUST00000190902 ENSMUSP00000140363 TRANSLATION protein_coding stop - 5 237.0 2.0 0.0 0.0 0.0 0.0 -4,-7 0.0523 - -2.0 MINOR ENSMUSG00000048766 Skint10 ENSMUST00000060327 ENSMUSP00000058838 TRANSLATION protein_coding - CCDS38841.1 1 354.0 0.0 1.3 0.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048766 Skint10 ENSMUST00000137128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048766 Skint10 ENSMUST00000068851 ENSMUSP00000067744 TRANSLATION protein_coding - - 1 112.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0147 - 0.0 MINOR ENSMUSG00000096854 Ifnz ENSMUST00000105144 ENSMUSP00000100775 TRANSLATION protein_coding - CCDS18333.1 - 182.0 0.0 0.4 0.0 96.3 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055960 Skint4 ENSMUST00000106566 ENSMUSP00000102176 TRANSLATION protein_coding - CCDS38837.1 1 482.0 0.0 2.6 0.0 57.5 1.0 0,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000055960 Skint4 ENSMUST00000106564 ENSMUSP00000102174 TRANSLATION protein_coding - CCDS84779.1 1 474.0 0.0 2.6 0.0 57.5 1.0 2,-1 0.5931 - 8.0 ALTERNATIVE:2 ENSMUSG00000055960 Skint4 ENSMUST00000069769 ENSMUSP00000070676 TRANSLATION protein_coding - CCDS84779.1 2 474.0 0.0 2.6 0.0 57.5 1.0 2,-1 0.5931 - 8.0 ALTERNATIVE:2 ENSMUSG00000055960 Skint4 ENSMUST00000106565 ENSMUSP00000102175 TRANSLATION protein_coding - CCDS84779.1 1 474.0 0.0 2.6 0.0 57.5 1.0 2,-1 0.5931 - 8.0 ALTERNATIVE:2 ENSMUSG00000028631 Kcnq4 ENSMUST00000129478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028631 Kcnq4 ENSMUST00000030376 ENSMUSP00000030376 TRANSLATION protein_coding - CCDS38865.1 5 696.0 0.0 9.9 5.7 388.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000078490 Cfap74 ENSMUST00000050128 - NO_TRANSLATION retained_intron ENSMUSG00000078490 Cfap74 ENSMUST00000151083 ENSMUSP00000123626 TRANSLATION protein_coding - - 5 1578.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.3124 3 0.0 ALTERNATIVE:2 ENSMUSG00000078490 Cfap74 ENSMUST00000129481 - NO_TRANSLATION retained_intron ENSMUSG00000078490 Cfap74 ENSMUST00000105619 ENSMUSP00000101244 TRANSLATION protein_coding - - 2 248.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0422 - 0.0 ALTERNATIVE:2 ENSMUSG00000078490 Cfap74 ENSMUST00000144157 - NO_TRANSLATION retained_intron ENSMUSG00000078490 Cfap74 ENSMUST00000094408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078490 Cfap74 ENSMUST00000123952 ENSMUSP00000131899 TRANSLATION protein_coding - CCDS51402.1 1 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:2 ENSMUSG00000078490 Cfap74 ENSMUST00000135407 - NO_TRANSLATION retained_intron ENSMUSG00000078490 Cfap74 ENSMUST00000165947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078490 Cfap74 ENSMUST00000144625 - NO_TRANSLATION retained_intron ENSMUSG00000078490 Cfap74 ENSMUST00000238423 ENSMUSP00000158718 TRANSLATION protein_coding - - - 1623.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.3169 3 0.0 ALTERNATIVE:2 ENSMUSG00000078490 Cfap74 ENSMUST00000238620 ENSMUSP00000158655 TRANSLATION protein_coding - - - 1605.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.3169 3 0.0 ALTERNATIVE:2 ENSMUSG00000061455 Stx17 ENSMUST00000064765 ENSMUSP00000068087 TRANSLATION protein_coding - CCDS18164.1 5 301.0 0.0 2.05 21.2 0.0 2.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000061455 Stx17 ENSMUST00000153502 ENSMUSP00000117512 TRANSLATION protein_coding stop - 2 137.0 0.0 0.0 1.0 0.0 0.0 -4,-5 0.077 3 -2.0 MINOR ENSMUSG00000061455 Stx17 ENSMUST00000107720 ENSMUSP00000103348 TRANSLATION protein_coding - CCDS18164.1 1 301.0 0.0 2.05 21.2 0.0 2.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000061455 Stx17 ENSMUST00000107721 ENSMUSP00000103349 TRANSLATION protein_coding - - 1 276.0 0.0 2.05 0.0 0.0 0.0 -4,-5 0.0301 2 6.0 MINOR ENSMUSG00000029034 Ints11 ENSMUST00000135844 - NO_TRANSLATION retained_intron ENSMUSG00000029034 Ints11 ENSMUST00000134678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029034 Ints11 ENSMUST00000030901 ENSMUSP00000030901 TRANSLATION protein_coding - CCDS19048.1 1 600.0 8.0 15.91 26.0 185.3 0.0 -4,-6 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000029034 Ints11 ENSMUST00000149458 - NO_TRANSLATION retained_intron ENSMUSG00000029034 Ints11 ENSMUST00000156460 ENSMUSP00000118803 TRANSLATION nonsense_mediated_decay - - 5 94.0 0.0 2.08 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029034 Ints11 ENSMUST00000120794 ENSMUSP00000112656 TRANSLATION protein_coding - - 5 578.0 7.0 15.16 0.0 185.3 0.0 -4,-6 0.0271 14 15.75 MINOR ENSMUSG00000029034 Ints11 ENSMUST00000132632 - NO_TRANSLATION retained_intron ENSMUSG00000036114 Rpp25l ENSMUST00000038434 ENSMUSP00000041477 TRANSLATION protein_coding - CCDS18068.1 1 163.0 0.0 1.0 4.9 59.6 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000050810 Oog3 ENSMUST00000050933 ENSMUSP00000059834 TRANSLATION protein_coding - CCDS51361.1 1 500.0 0.0 2.1 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028599 Tnfrsf1b ENSMUST00000030336 ENSMUSP00000030336 TRANSLATION protein_coding - CCDS18914.1 1 474.0 0.0 4.2 0.4 61.2 0.0 2,-3 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000028599 Tnfrsf1b ENSMUST00000143055 ENSMUSP00000115702 TRANSLATION nonsense_mediated_decay - - 3 55.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.003 - -2.0 MINOR ENSMUSG00000094035 Ldlrad2 ENSMUST00000238480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094035 Ldlrad2 ENSMUST00000238941 ENSMUSP00000158970 TRANSLATION protein_coding - - - 344.0 4.0 0.75 0.0 0.0 1.0 2,-2 0.7602 - 10.0 PRINCIPAL:1 ENSMUSG00000094035 Ldlrad2 ENSMUST00000178923 ENSMUSP00000136854 TRANSLATION protein_coding - CCDS18819.1 5 142.0 2.0 0.0 0.0 0.0 1.0 -4,-5 0.182 - 2.0 MINOR ENSMUSG00000028438 Kif24 ENSMUST00000133497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028438 Kif24 ENSMUST00000154535 ENSMUSP00000119009 TRANSLATION protein_coding stop - 3 141.0 0.0 0.0 0.0 25.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028438 Kif24 ENSMUST00000154175 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028438 Kif24 ENSMUST00000141951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028438 Kif24 ENSMUST00000131532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028438 Kif24 ENSMUST00000127376 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028438 Kif24 ENSMUST00000030148 ENSMUSP00000030148 TRANSLATION protein_coding - - 1 1222.0 4.0 4.35 0.0 199.9 0.0 -4,-5 0.0194 2 2.532 MINOR ENSMUSG00000028438 Kif24 ENSMUST00000108055 ENSMUSP00000103690 TRANSLATION protein_coding - CCDS18060.2 1 1356.0 11.0 6.75 0.0 350.5 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000040606 Kazn ENSMUST00000148812 - NO_TRANSLATION retained_intron ENSMUSG00000040606 Kazn ENSMUST00000144611 - NO_TRANSLATION retained_intron ENSMUSG00000040606 Kazn ENSMUST00000172864 ENSMUSP00000133972 TRANSLATION protein_coding - - 1 425.0 2.0 1.0 4.7 0.0 0.0 -4,-5 0.5081 8 4.0 MINOR ENSMUSG00000040606 Kazn ENSMUST00000135922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040606 Kazn ENSMUST00000173068 ENSMUSP00000134498 TRANSLATION protein_coding start/stop - 5 242.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 5 -2.0 MINOR ENSMUSG00000040606 Kazn ENSMUST00000174432 ENSMUSP00000134631 TRANSLATION protein_coding - - 5 426.0 2.0 1.0 4.7 0.0 0.0 -4,-7 0.5058 8 4.0 MINOR ENSMUSG00000040606 Kazn ENSMUST00000129032 ENSMUSP00000115897 TRANSLATION protein_coding start - 5 261.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 5 -2.0 MINOR ENSMUSG00000040606 Kazn ENSMUST00000036476 ENSMUSP00000038835 TRANSLATION protein_coding - CCDS51350.1 1 414.0 2.0 0.0 3.2 0.0 0.0 -4,-7 0.2907 9 3.19 MINOR ENSMUSG00000040606 Kazn ENSMUST00000155023 ENSMUSP00000116071 TRANSLATION protein_coding - - 1 779.0 2.0 4.8 3.5 126.3 0.0 -4,-5 1.0 10 15.352 PRINCIPAL:1 ENSMUSG00000036078 Sigmar1 ENSMUST00000149647 - NO_TRANSLATION retained_intron ENSMUSG00000036078 Sigmar1 ENSMUST00000146655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036078 Sigmar1 ENSMUST00000133590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036078 Sigmar1 ENSMUST00000142840 - NO_TRANSLATION retained_intron ENSMUSG00000036078 Sigmar1 ENSMUST00000059354 ENSMUSP00000056027 TRANSLATION protein_coding - CCDS18070.1 1 223.0 0.0 4.0 11.0 219.9 1.0 1,-4 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000036078 Sigmar1 ENSMUST00000148223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036078 Sigmar1 ENSMUST00000123524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036078 Sigmar1 ENSMUST00000071561 ENSMUSP00000071492 TRANSLATION protein_coding - CCDS71362.1 1 192.0 0.0 3.0 1.0 103.3 1.0 1,-4 0.025 1 4.002 MINOR ENSMUSG00000073910 Mob3b ENSMUST00000102975 ENSMUSP00000100040 TRANSLATION protein_coding - CCDS18036.1 1 216.0 4.0 2.33 36.9 265.8 0.0 -4,-7 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000073910 Mob3b ENSMUST00000155725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046637 Ttc34 ENSMUST00000207854 ENSMUSP00000146409 TRANSLATION protein_coding - - 5 1063.0 0.0 1.24 0.1 0.0 0.0 -4,-5 0.8092 - 6.0 PRINCIPAL:2 ENSMUSG00000046637 Ttc34 ENSMUST00000050220 ENSMUSP00000051782 TRANSLATION protein_coding - CCDS19015.1 1 554.0 0.0 1.24 0.0 0.0 0.0 -4,-6 0.4072 - 6.0 ALTERNATIVE:2 ENSMUSG00000046637 Ttc34 ENSMUST00000137684 - NO_TRANSLATION retained_intron ENSMUSG00000028963 Uts2 ENSMUST00000030803 ENSMUSP00000030803 TRANSLATION protein_coding - CCDS18977.1 1 123.0 0.0 0.0 1.2 26.4 0.0 4,-1 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000007872 Id3 ENSMUST00000133946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007872 Id3 ENSMUST00000008016 ENSMUSP00000008016 TRANSLATION protein_coding - CCDS18800.1 1 119.0 0.0 1.0 14.5 40.4 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000007872 Id3 ENSMUST00000151001 - NO_TRANSLATION retained_intron ENSMUSG00000028869 Gnl2 ENSMUST00000147390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028869 Gnl2 ENSMUST00000136910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028869 Gnl2 ENSMUST00000030684 ENSMUSP00000030684 TRANSLATION protein_coding - CCDS18634.1 1 728.0 14.0 2.12 5.4 216.2 0.0 -4,-2 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000028869 Gnl2 ENSMUST00000125078 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028869 Gnl2 ENSMUST00000147550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028869 Gnl2 ENSMUST00000106176 ENSMUSP00000101782 TRANSLATION protein_coding stop - 3 100.0 0.0 0.0 0.0 71.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000028520 4921539E11Rik ENSMUST00000030245 ENSMUSP00000030245 TRANSLATION protein_coding - CCDS51248.1 1 446.0 0.0 0.0 0.0 673.2 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028520 4921539E11Rik ENSMUST00000097944 ENSMUSP00000095557 TRANSLATION protein_coding - - 1 283.0 0.0 0.0 0.0 376.2 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028520 4921539E11Rik ENSMUST00000168664 ENSMUSP00000131846 TRANSLATION protein_coding - CCDS51247.1 1 345.0 0.0 0.0 0.0 517.0 0.0 -4,-5 0.0551 - 0.0 MINOR ENSMUSG00000042408 Zmym6 ENSMUST00000046751 ENSMUSP00000045366 TRANSLATION protein_coding - CCDS18664.1 1 1249.0 9.0 0.0 0.4 52.9 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000042408 Zmym6 ENSMUST00000146616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042408 Zmym6 ENSMUST00000094713 ENSMUSP00000092303 TRANSLATION protein_coding - CCDS71469.1 1 1157.0 9.0 0.0 0.0 29.8 0.0 -4,-5 0.1049 1 9.378 MINOR ENSMUSG00000042408 Zmym6 ENSMUST00000151461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042408 Zmym6 ENSMUST00000125160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042408 Zmym6 ENSMUST00000129926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050323 Ndufaf6 ENSMUST00000144475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050323 Ndufaf6 ENSMUST00000141019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050323 Ndufaf6 ENSMUST00000126468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050323 Ndufaf6 ENSMUST00000058183 ENSMUSP00000062039 TRANSLATION protein_coding - CCDS38691.1 1 333.0 0.0 7.2 9.2 203.7 0.0 -4,0 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000050323 Ndufaf6 ENSMUST00000148127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050323 Ndufaf6 ENSMUST00000124607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050323 Ndufaf6 ENSMUST00000154122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028607 Cpt2 ENSMUST00000106719 ENSMUSP00000102330 TRANSLATION protein_coding stop - 5 265.0 0.0 3.35 0.0 172.8 0.0 -4,-1 0.0004 8 -2.0 MINOR ENSMUSG00000028607 Cpt2 ENSMUST00000030345 ENSMUSP00000030345 TRANSLATION protein_coding - CCDS18443.1 1 658.0 27.0 6.35 8.0 657.4 0.0 -4,-1 1.0 29 21.0 PRINCIPAL:1 ENSMUSG00000028607 Cpt2 ENSMUST00000106720 ENSMUSP00000102331 TRANSLATION protein_coding - - 2 223.0 7.0 3.35 0.0 113.3 0.0 -4,-1 0.0 6 0.0 MINOR ENSMUSG00000028607 Cpt2 ENSMUST00000131644 ENSMUSP00000114362 TRANSLATION protein_coding stop - 5 88.0 0.0 1.6 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000028607 Cpt2 ENSMUST00000175651 - NO_TRANSLATION retained_intron ENSMUSG00000028607 Cpt2 ENSMUST00000141738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052684 Jun ENSMUST00000249436 ENSMUSP00000159761 TRANSLATION protein_coding - - - 356.0 0.0 0.4 0.0 395.0 0.0 -4,-1 0.0887 3 12.0 MINOR ENSMUSG00000052684 Jun ENSMUST00000107094 ENSMUSP00000102711 TRANSLATION protein_coding - CCDS18364.1 - 334.0 0.0 0.4 6.3 395.0 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000028582 Cc2d1b ENSMUST00000176877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028582 Cc2d1b ENSMUST00000106665 - NO_TRANSLATION retained_intron ENSMUSG00000028582 Cc2d1b ENSMUST00000176846 - NO_TRANSLATION retained_intron ENSMUSG00000028582 Cc2d1b ENSMUST00000134844 ENSMUSP00000123277 TRANSLATION protein_coding start - 1 770.0 0.0 5.444 0.0 38.6 0.0 -4,-6 0.0582 14 -2.0 MINOR ENSMUSG00000028582 Cc2d1b ENSMUST00000030320 ENSMUSP00000030320 TRANSLATION protein_coding - CCDS18454.1 1 848.0 0.0 5.444 3.2 38.6 0.0 -4,-6 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000028582 Cc2d1b ENSMUST00000150199 - NO_TRANSLATION retained_intron ENSMUSG00000028582 Cc2d1b ENSMUST00000139962 ENSMUSP00000135399 TRANSLATION nonsense_mediated_decay start - 3 126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028582 Cc2d1b ENSMUST00000143336 - NO_TRANSLATION retained_intron ENSMUSG00000028582 Cc2d1b ENSMUST00000126156 - NO_TRANSLATION retained_intron ENSMUSG00000028773 Fabp3 ENSMUST00000070532 ENSMUSP00000070709 TRANSLATION protein_coding - CCDS18709.1 1 133.0 20.0 3.25 36.9 103.9 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000006699 Cdc42 ENSMUST00000030417 ENSMUSP00000030417 TRANSLATION protein_coding - CCDS57305.1 2 191.0 23.0 4.5 35.0 179.9 0.0 -4,-5 0.959 7 16.0 ALTERNATIVE:1 ENSMUSG00000006699 Cdc42 ENSMUST00000051477 ENSMUSP00000054634 TRANSLATION protein_coding - CCDS18816.1 1 191.0 23.0 4.5 35.0 180.9 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:3 ENSMUSG00000042707 Dnali1 ENSMUST00000036383 ENSMUSP00000047783 TRANSLATION protein_coding - CCDS18635.1 1 258.0 0.0 0.0 19.9 311.2 0.0 -4,-5 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000028347 Tmeff1 ENSMUST00000130834 ENSMUSP00000121740 TRANSLATION protein_coding start - 1 346.0 0.0 3.312 0.0 75.2 3.0 -4,-6 0.0772 7 -2.0 MINOR ENSMUSG00000028347 Tmeff1 ENSMUST00000030032 ENSMUSP00000030032 TRANSLATION protein_coding - CCDS18168.1 1 372.0 0.0 3.272 1.5 75.2 3.0 3,-2 1.0 7 12.922 PRINCIPAL:1 ENSMUSG00000028347 Tmeff1 ENSMUST00000123476 ENSMUSP00000115841 TRANSLATION protein_coding - CCDS18168.1 1 372.0 0.0 3.272 1.5 75.2 3.0 3,-2 1.0 7 12.922 PRINCIPAL:1 ENSMUSG00000028347 Tmeff1 ENSMUST00000141720 ENSMUSP00000118581 TRANSLATION protein_coding start - 5 151.0 0.0 1.2 0.0 0.0 3.0 -4,-5 0.0026 5 -2.0 MINOR ENSMUSG00000078713 Tomm5 ENSMUST00000107808 ENSMUSP00000103438 TRANSLATION protein_coding - CCDS51172.1 2 61.0 0.0 1.0 0.0 94.6 0.0 -4,-6 0.014 2 8.856 MINOR ENSMUSG00000078713 Tomm5 ENSMUST00000107810 ENSMUSP00000103440 TRANSLATION protein_coding - CCDS38751.1 1 51.0 0.0 1.33 36.9 122.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000078713 Tomm5 ENSMUST00000107807 ENSMUSP00000103437 TRANSLATION protein_coding - - 2 43.0 0.0 1.0 0.0 91.5 0.0 -4,-5 0.0 2 8.67 MINOR ENSMUSG00000078713 Tomm5 ENSMUST00000107809 ENSMUSP00000103439 TRANSLATION protein_coding - - 3 104.0 0.0 1.0 0.0 90.0 0.0 -4,-5 0.03 2 8.58 MINOR ENSMUSG00000028661 Epha8 ENSMUST00000030420 ENSMUSP00000030420 TRANSLATION protein_coding - CCDS18813.1 1 1004.0 18.0 11.5 5.9 725.1 0.0 1,-3 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000042993 Ifnk ENSMUST00000058595 ENSMUSP00000054273 TRANSLATION protein_coding - CCDS18037.1 1 199.0 0.0 0.5 0.0 123.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039768 Dnajc11 ENSMUST00000124955 - NO_TRANSLATION retained_intron ENSMUSG00000039768 Dnajc11 ENSMUST00000133959 - NO_TRANSLATION retained_intron ENSMUSG00000039768 Dnajc11 ENSMUST00000139069 ENSMUSP00000119604 TRANSLATION nonsense_mediated_decay - - 1 402.0 0.0 2.7 0.0 78.2 0.0 -4,-5 0.0162 9 -2.0 MINOR ENSMUSG00000039768 Dnajc11 ENSMUST00000148048 - NO_TRANSLATION retained_intron ENSMUSG00000039768 Dnajc11 ENSMUST00000142198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039768 Dnajc11 ENSMUST00000147625 ENSMUSP00000122140 TRANSLATION protein_coding stop - 3 127.0 0.0 1.55 0.0 41.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039768 Dnajc11 ENSMUST00000123551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039768 Dnajc11 ENSMUST00000138738 - NO_TRANSLATION retained_intron ENSMUSG00000039768 Dnajc11 ENSMUST00000149337 - NO_TRANSLATION retained_intron ENSMUSG00000039768 Dnajc11 ENSMUST00000062904 ENSMUSP00000051643 TRANSLATION protein_coding - CCDS18981.2 1 559.0 0.0 2.7 31.1 239.8 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000039768 Dnajc11 ENSMUST00000128582 - NO_TRANSLATION retained_intron ENSMUSG00000039768 Dnajc11 ENSMUST00000139555 - NO_TRANSLATION retained_intron ENSMUSG00000043207 Zmpste24 ENSMUST00000143768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043207 Zmpste24 ENSMUST00000135788 ENSMUSP00000122588 TRANSLATION protein_coding start/stop - 5 146.0 0.0 2.58 0.0 135.9 3.0 -4,-6 0.0016 2 -2.0 MINOR ENSMUSG00000043207 Zmpste24 ENSMUST00000058754 ENSMUSP00000053900 TRANSLATION protein_coding - CCDS18600.1 1 475.0 4.0 9.24 12.5 464.7 5.0 -4,-7 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000028656 Cap1 ENSMUST00000140783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028656 Cap1 ENSMUST00000106257 ENSMUSP00000101864 TRANSLATION protein_coding - CCDS18604.1 1 474.0 0.0 8.28 18.8 591.4 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000028656 Cap1 ENSMUST00000150919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028656 Cap1 ENSMUST00000069533 ENSMUSP00000068260 TRANSLATION protein_coding - CCDS18604.1 1 474.0 0.0 8.28 18.8 591.4 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000028656 Cap1 ENSMUST00000128485 ENSMUSP00000114847 TRANSLATION protein_coding stop - 3 164.0 0.0 3.25 0.0 182.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000028656 Cap1 ENSMUST00000106255 ENSMUSP00000101862 TRANSLATION protein_coding - CCDS18604.1 1 474.0 0.0 8.28 18.8 591.4 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000028656 Cap1 ENSMUST00000151041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028676 Srsf10 ENSMUST00000097844 ENSMUSP00000095455 TRANSLATION protein_coding - CCDS71493.1 2 261.0 0.0 2.882 20.9 70.6 0.0 -4,-2 0.9851 4 11.796 ALTERNATIVE:1 ENSMUSG00000028676 Srsf10 ENSMUST00000030438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028676 Srsf10 ENSMUST00000154447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028676 Srsf10 ENSMUST00000126641 ENSMUSP00000114564 TRANSLATION protein_coding - CCDS18791.1 1 183.0 0.0 2.982 11.0 70.6 0.0 -4,-2 0.7326 4 10.012 MINOR ENSMUSG00000028676 Srsf10 ENSMUST00000129198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028676 Srsf10 ENSMUST00000105853 ENSMUSP00000101479 TRANSLATION protein_coding - CCDS38922.1 1 262.0 0.0 2.882 20.9 70.6 0.0 -4,-2 1.0 4 11.796 PRINCIPAL:4 ENSMUSG00000028676 Srsf10 ENSMUST00000129718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028676 Srsf10 ENSMUST00000149878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028676 Srsf10 ENSMUST00000142002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028676 Srsf10 ENSMUST00000102544 ENSMUSP00000099603 TRANSLATION protein_coding - CCDS71494.1 1 182.0 0.0 2.982 11.0 70.6 0.0 -4,-2 0.7326 4 10.012 MINOR ENSMUSG00000040728 Esrp1 ENSMUST00000155519 ENSMUSP00000119598 TRANSLATION protein_coding start - 1 500.0 0.0 4.29 0.0 0.0 0.0 -4,-5 0.0141 6 -2.0 MINOR ENSMUSG00000040728 Esrp1 ENSMUST00000108310 ENSMUSP00000103946 TRANSLATION protein_coding - - 5 677.0 0.0 5.29 12.7 0.0 0.0 -2,-4 0.8123 7 9.184 ALTERNATIVE:1 ENSMUSG00000040728 Esrp1 ENSMUST00000147342 ENSMUSP00000121117 TRANSLATION protein_coding start - 5 467.0 0.0 4.49 0.0 0.0 0.0 -4,-5 0.0091 5 -2.0 MINOR ENSMUSG00000040728 Esrp1 ENSMUST00000043781 ENSMUSP00000037921 TRANSLATION protein_coding - - 5 659.0 0.0 5.29 11.1 0.0 0.0 -2,-4 0.723 8 8.748 MINOR ENSMUSG00000040728 Esrp1 ENSMUST00000108313 ENSMUSP00000103949 TRANSLATION protein_coding - CCDS84703.1 5 604.0 0.0 5.29 9.5 0.0 0.0 -2,-4 0.8166 6 8.312 MINOR ENSMUSG00000040728 Esrp1 ENSMUST00000127399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040728 Esrp1 ENSMUST00000108311 ENSMUSP00000103947 TRANSLATION protein_coding - CCDS51119.1 5 681.0 0.0 5.29 15.7 0.0 0.0 -2,-4 1.0 8 10.0 PRINCIPAL:3 ENSMUSG00000028917 Plekhm2 ENSMUST00000141844 - NO_TRANSLATION retained_intron ENSMUSG00000028917 Plekhm2 ENSMUST00000150229 - NO_TRANSLATION retained_intron ENSMUSG00000028917 Plekhm2 ENSMUST00000030751 ENSMUSP00000030751 TRANSLATION protein_coding - CCDS84816.1 1 1013.0 0.0 2.55 0.1 93.7 0.0 -4,-5 0.5835 12 8.0 ALTERNATIVE:2 ENSMUSG00000028917 Plekhm2 ENSMUST00000140223 - NO_TRANSLATION retained_intron ENSMUSG00000028917 Plekhm2 ENSMUST00000084203 ENSMUSP00000081221 TRANSLATION protein_coding - CCDS51348.1 5 1033.0 0.0 2.55 0.1 93.7 0.0 -4,-5 1.0 12 8.0 PRINCIPAL:2 ENSMUSG00000028917 Plekhm2 ENSMUST00000136102 - NO_TRANSLATION retained_intron ENSMUSG00000039953 Clstn1 ENSMUST00000105691 ENSMUSP00000101316 TRANSLATION protein_coding - CCDS71522.1 1 969.0 13.0 1.982 2.6 67.9 1.0 4,-2 0.576 13 14.292 ALTERNATIVE:2 ENSMUSG00000039953 Clstn1 ENSMUST00000151895 - NO_TRANSLATION retained_intron ENSMUSG00000039953 Clstn1 ENSMUST00000039144 ENSMUSP00000036962 TRANSLATION protein_coding - CCDS18963.1 1 979.0 13.0 2.246 2.6 67.9 1.0 4,-2 1.0 13 15.0 PRINCIPAL:2 ENSMUSG00000039953 Clstn1 ENSMUST00000137232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028415 Spink4 ENSMUST00000030122 ENSMUSP00000030122 TRANSLATION protein_coding - CCDS18052.1 1 86.0 0.0 1.8 6.9 51.5 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028415 Spink4 ENSMUST00000132943 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042198 Chchd7 ENSMUST00000121110 ENSMUSP00000113276 TRANSLATION protein_coding - CCDS38686.1 5 85.0 0.0 2.33 15.5 0.0 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000042198 Chchd7 ENSMUST00000151519 - NO_TRANSLATION retained_intron ENSMUSG00000042198 Chchd7 ENSMUST00000120732 ENSMUSP00000112389 TRANSLATION protein_coding - - 1 52.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0028 2 3.216 MINOR ENSMUSG00000042198 Chchd7 ENSMUST00000137037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042198 Chchd7 ENSMUST00000128829 - NO_TRANSLATION retained_intron ENSMUSG00000042198 Chchd7 ENSMUST00000041122 ENSMUSP00000041196 TRANSLATION protein_coding - CCDS38686.1 1 85.0 0.0 2.33 15.5 0.0 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000042198 Chchd7 ENSMUST00000119403 ENSMUSP00000113613 TRANSLATION protein_coding - CCDS38686.1 2 85.0 0.0 2.33 15.5 0.0 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000042198 Chchd7 ENSMUST00000149544 ENSMUSP00000118311 TRANSLATION protein_coding stop - 2 79.0 0.0 2.33 0.0 0.0 0.0 -4,-5 0.0281 4 -2.0 MINOR ENSMUSG00000042198 Chchd7 ENSMUST00000121651 ENSMUSP00000112967 TRANSLATION protein_coding - CCDS38686.1 1 85.0 0.0 2.33 15.5 0.0 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000042198 Chchd7 ENSMUST00000108386 ENSMUSP00000104023 TRANSLATION protein_coding - CCDS38686.1 1 85.0 0.0 2.33 15.5 0.0 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000042198 Chchd7 ENSMUST00000150618 ENSMUSP00000118860 TRANSLATION nonsense_mediated_decay - CCDS38686.1 2 85.0 0.0 2.33 15.5 0.0 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000042198 Chchd7 ENSMUST00000121210 ENSMUSP00000113884 TRANSLATION protein_coding - - 2 59.0 0.0 1.415 0.0 0.0 0.0 -4,-5 0.0039 2 3.642 MINOR ENSMUSG00000042198 Chchd7 ENSMUST00000123769 ENSMUSP00000117652 TRANSLATION protein_coding stop - 5 57.0 0.0 1.58 0.0 0.0 0.0 -4,-5 0.0039 2 -2.0 MINOR ENSMUSG00000042198 Chchd7 ENSMUST00000119307 ENSMUSP00000113811 TRANSLATION protein_coding - CCDS38686.1 2 85.0 0.0 2.33 15.5 0.0 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000042198 Chchd7 ENSMUST00000131746 ENSMUSP00000117905 TRANSLATION nonsense_mediated_decay - - 3 39.0 0.0 0.25 0.0 0.0 0.0 -4,-6 0.0058 - -2.0 MINOR ENSMUSG00000028583 Pdpn ENSMUST00000119654 ENSMUSP00000113776 TRANSLATION protein_coding - CCDS71511.1 3 159.0 0.0 1.0 0.7 202.3 1.0 4,-1 0.7827 2 8.0 PRINCIPAL:1 ENSMUSG00000028583 Pdpn ENSMUST00000030317 ENSMUSP00000030317 TRANSLATION protein_coding - CCDS38943.1 1 172.0 0.0 1.0 0.0 217.4 1.0 4,-1 0.5781 2 6.666 MINOR ENSMUSG00000042446 Zmym4 ENSMUST00000154821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042446 Zmym4 ENSMUST00000123597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042446 Zmym4 ENSMUST00000106108 ENSMUSP00000101714 TRANSLATION protein_coding - CCDS51303.1 1 1549.0 18.0 0.5 9.6 372.0 0.0 -4,-5 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000042446 Zmym4 ENSMUST00000150467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042446 Zmym4 ENSMUST00000151026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042446 Zmym4 ENSMUST00000129028 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042446 Zmym4 ENSMUST00000135003 ENSMUSP00000120813 TRANSLATION protein_coding start - 1 1209.0 14.0 0.5 0.0 372.0 0.0 -4,-5 0.2364 13 -2.0 MINOR ENSMUSG00000042446 Zmym4 ENSMUST00000152952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042446 Zmym4 ENSMUST00000152489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051435 Fhad1 ENSMUST00000123068 - NO_TRANSLATION retained_intron ENSMUSG00000051435 Fhad1 ENSMUST00000129192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051435 Fhad1 ENSMUST00000105779 ENSMUSP00000101405 TRANSLATION protein_coding - CCDS51349.1 5 1420.0 0.0 1.1 0.1 57.8 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000051435 Fhad1 ENSMUST00000125293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051435 Fhad1 ENSMUST00000124125 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051435 Fhad1 ENSMUST00000036701 ENSMUSP00000036224 TRANSLATION protein_coding - - 1 396.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0024 3 0.0 MINOR ENSMUSG00000051435 Fhad1 ENSMUST00000137618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051435 Fhad1 ENSMUST00000105780 ENSMUSP00000101406 TRANSLATION protein_coding - CCDS51349.1 5 1420.0 0.0 1.1 0.1 57.8 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000006390 Elovl1 ENSMUST00000143140 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006390 Elovl1 ENSMUST00000129419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006390 Elovl1 ENSMUST00000067896 ENSMUSP00000064816 TRANSLATION protein_coding - CCDS18549.1 1 279.0 0.0 5.45 14.5 216.9 6.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000006390 Elovl1 ENSMUST00000167636 ENSMUSP00000126685 TRANSLATION protein_coding - CCDS18549.1 1 279.0 0.0 5.45 14.5 216.9 6.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000006390 Elovl1 ENSMUST00000135162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006390 Elovl1 ENSMUST00000006557 ENSMUSP00000006557 TRANSLATION protein_coding - CCDS18549.1 1 279.0 0.0 5.45 14.5 216.9 6.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000006390 Elovl1 ENSMUST00000102673 ENSMUSP00000099734 TRANSLATION protein_coding - CCDS18550.1 1 202.0 0.0 4.25 2.8 167.9 4.0 -4,-7 0.0548 2 7.192 MINOR ENSMUSG00000058046 4933430I17Rik ENSMUST00000062145 ENSMUSP00000050465 TRANSLATION protein_coding - - 1 474.0 0.0 0.0 0.0 594.7 0.0 -4,-5 0.7697 - 6.0 PRINCIPAL:1 ENSMUSG00000028749 Pla2g2f ENSMUST00000030526 ENSMUSP00000030526 TRANSLATION protein_coding - CCDS18832.1 1 210.0 3.0 3.0 5.2 118.4 0.0 -4,-7 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000094695 Gm21953 ENSMUST00000238203 ENSMUSP00000158629 TRANSLATION protein_coding - CCDS57271.1 - 87.0 0.0 1.25 6.4 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000094695 Gm21953 ENSMUST00000108002 ENSMUSP00000103637 TRANSLATION protein_coding - CCDS57271.1 5 87.0 0.0 1.25 6.4 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000028557 Rnf11 ENSMUST00000030284 ENSMUSP00000030284 TRANSLATION protein_coding - CCDS18464.1 1 154.0 8.0 1.58 33.7 45.4 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000028557 Rnf11 ENSMUST00000064167 ENSMUSP00000063798 TRANSLATION protein_coding - CCDS18464.1 1 154.0 8.0 1.58 33.7 45.4 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000028557 Rnf11 ENSMUST00000145980 ENSMUSP00000115779 TRANSLATION protein_coding stop - 3 144.0 8.0 1.25 0.0 45.4 0.0 -4,-5 0.0109 1 -2.0 MINOR ENSMUSG00000067916 Zfp991 ENSMUST00000151022 ENSMUSP00000120221 TRANSLATION protein_coding stop - 3 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000067916 Zfp991 ENSMUST00000084149 ENSMUSP00000081167 TRANSLATION protein_coding - CCDS38961.1 1 573.0 48.0 1.0 0.0 315.0 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028689 Ccdc163 ENSMUST00000126197 - NO_TRANSLATION retained_intron ENSMUSG00000028689 Ccdc163 ENSMUST00000125671 ENSMUSP00000120954 TRANSLATION protein_coding stop - 5 124.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0151 - -2.0 MINOR ENSMUSG00000028689 Ccdc163 ENSMUST00000156206 ENSMUSP00000123645 TRANSLATION protein_coding start - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.015 - -2.0 MINOR ENSMUSG00000028689 Ccdc163 ENSMUST00000135499 ENSMUSP00000114263 TRANSLATION protein_coding stop - 3 73.0 3.0 0.0 0.0 0.0 0.0 -4,-6 0.0177 - -2.0 MINOR ENSMUSG00000028689 Ccdc163 ENSMUST00000129624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028689 Ccdc163 ENSMUST00000155391 ENSMUSP00000120050 TRANSLATION nonsense_mediated_decay - - 2 193.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0301 - -2.0 MINOR ENSMUSG00000028689 Ccdc163 ENSMUST00000124628 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028689 Ccdc163 ENSMUST00000106464 ENSMUSP00000102072 TRANSLATION protein_coding - CCDS38853.1 5 326.0 0.0 0.0 0.1 0.0 0.0 -4,-6 0.2215 - 0.0 ALTERNATIVE:2 ENSMUSG00000028689 Ccdc163 ENSMUST00000130828 ENSMUSP00000120572 TRANSLATION protein_coding stop - 5 184.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0257 - -2.0 MINOR ENSMUSG00000028689 Ccdc163 ENSMUST00000138305 ENSMUSP00000118352 TRANSLATION protein_coding stop - 2 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0157 - -2.0 MINOR ENSMUSG00000028689 Ccdc163 ENSMUST00000106462 ENSMUSP00000102070 TRANSLATION protein_coding - - 1 209.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5876 - 0.0 PRINCIPAL:2 ENSMUSG00000028689 Ccdc163 ENSMUST00000134192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028689 Ccdc163 ENSMUST00000030452 ENSMUSP00000030452 TRANSLATION protein_coding - - 5 248.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0573 - 0.0 ALTERNATIVE:2 ENSMUSG00000028689 Ccdc163 ENSMUST00000106463 ENSMUSP00000102071 TRANSLATION protein_coding - CCDS38853.1 5 326.0 0.0 0.0 0.1 0.0 0.0 -4,-6 0.2215 - 0.0 ALTERNATIVE:2 ENSMUSG00000023263 9530002B09Rik ENSMUST00000024032 ENSMUSP00000024032 TRANSLATION protein_coding - CCDS18603.1 1 135.0 0.0 0.9 0.0 23.9 0.0 3,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000028670 Lypla2 ENSMUST00000150978 - NO_TRANSLATION retained_intron ENSMUSG00000028670 Lypla2 ENSMUST00000156948 - NO_TRANSLATION retained_intron ENSMUSG00000028670 Lypla2 ENSMUST00000067567 ENSMUSP00000064204 TRANSLATION protein_coding - CCDS18797.1 1 231.0 7.0 6.33 36.9 298.8 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028670 Lypla2 ENSMUST00000145350 - NO_TRANSLATION retained_intron ENSMUSG00000028670 Lypla2 ENSMUST00000105852 ENSMUSP00000101478 TRANSLATION protein_coding - CCDS18797.1 1 231.0 7.0 6.33 36.9 298.8 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028544 Slc5a9 ENSMUST00000149922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028544 Slc5a9 ENSMUST00000102721 ENSMUSP00000099782 TRANSLATION protein_coding - CCDS18474.1 1 685.0 0.0 10.25 1.1 499.8 13.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000028544 Slc5a9 ENSMUST00000102719 ENSMUSP00000099780 TRANSLATION protein_coding - CCDS18474.1 1 685.0 0.0 10.25 1.1 499.8 13.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000028544 Slc5a9 ENSMUST00000102720 ENSMUSP00000099781 TRANSLATION protein_coding - CCDS18474.1 1 685.0 0.0 10.25 1.1 499.8 13.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000028544 Slc5a9 ENSMUST00000128224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028544 Slc5a9 ENSMUST00000128340 ENSMUSP00000120546 TRANSLATION protein_coding start/stop - 3 255.0 0.0 5.05 0.0 227.8 7.0 -2,-5 0.0072 - -2.0 MINOR ENSMUSG00000028544 Slc5a9 ENSMUST00000154838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028544 Slc5a9 ENSMUST00000131772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028706 Nsun4 ENSMUST00000136655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028706 Nsun4 ENSMUST00000030474 ENSMUSP00000030474 TRANSLATION nonsense_mediated_decay start - 1 57.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028706 Nsun4 ENSMUST00000151720 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028706 Nsun4 ENSMUST00000030475 ENSMUSP00000030475 TRANSLATION protein_coding - CCDS18502.1 1 381.0 19.0 5.5 9.8 98.4 0.0 -4,-1 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000028706 Nsun4 ENSMUST00000165493 ENSMUSP00000130430 TRANSLATION protein_coding - - 2 806.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0391 1 0.0 MINOR ENSMUSG00000028706 Nsun4 ENSMUST00000152712 - NO_TRANSLATION retained_intron ENSMUSG00000003038 Hmgn2 ENSMUST00000136327 ENSMUSP00000114704 TRANSLATION protein_coding - - 2 109.0 0.0 0.0 0.0 103.3 0.0 -4,-5 0.0047 - 1.0 MINOR ENSMUSG00000003038 Hmgn2 ENSMUST00000153622 - NO_TRANSLATION retained_intron ENSMUSG00000003038 Hmgn2 ENSMUST00000137456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003038 Hmgn2 ENSMUST00000123234 ENSMUSP00000120795 TRANSLATION protein_coding start - 3 112.0 0.0 0.0 0.0 103.7 0.0 -4,-6 0.0253 1 -2.0 MINOR ENSMUSG00000003038 Hmgn2 ENSMUST00000100472 ENSMUSP00000098040 TRANSLATION protein_coding - - 2 92.0 0.0 0.0 20.7 108.8 0.0 -4,-5 0.7896 1 5.6 ALTERNATIVE:1 ENSMUSG00000003038 Hmgn2 ENSMUST00000125266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003038 Hmgn2 ENSMUST00000138458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003038 Hmgn2 ENSMUST00000145025 - NO_TRANSLATION retained_intron ENSMUSG00000003038 Hmgn2 ENSMUST00000102553 ENSMUSP00000099613 TRANSLATION protein_coding - CCDS18759.1 1 90.0 0.0 0.0 22.9 113.4 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:4 ENSMUSG00000003038 Hmgn2 ENSMUST00000102552 ENSMUSP00000099612 TRANSLATION protein_coding - CCDS18759.1 2 90.0 0.0 0.0 22.9 113.4 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:4 ENSMUSG00000003038 Hmgn2 ENSMUST00000136859 - NO_TRANSLATION retained_intron ENSMUSG00000003038 Hmgn2 ENSMUST00000130809 - NO_TRANSLATION retained_intron ENSMUSG00000003038 Hmgn2 ENSMUST00000105893 ENSMUSP00000101513 TRANSLATION protein_coding - - 3 96.0 0.0 0.0 0.0 103.7 0.0 -4,-5 0.0242 1 2.0 MINOR ENSMUSG00000078673 Mup19 ENSMUST00000107477 ENSMUSP00000103101 TRANSLATION protein_coding - - 2 187.0 0.0 4.55 0.0 110.3 0.0 4,-1 0.1068 - 7.34 ALTERNATIVE:2 ENSMUSG00000078673 Mup19 ENSMUST00000080606 ENSMUSP00000079442 TRANSLATION protein_coding - CCDS51200.1 1 180.0 0.0 4.88 0.0 110.3 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000066154 Mup3 ENSMUST00000107472 ENSMUSP00000103096 TRANSLATION protein_coding - CCDS18234.1 1 184.0 0.0 4.68 0.0 122.2 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000066154 Mup3 ENSMUST00000084531 ENSMUSP00000081579 TRANSLATION protein_coding - CCDS18234.1 1 184.0 0.0 4.68 0.0 122.2 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000051557 Pusl1 ENSMUST00000097737 ENSMUSP00000095344 TRANSLATION protein_coding - CCDS51404.1 5 291.0 1.0 5.75 0.3 114.4 0.0 -4,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000051557 Pusl1 ENSMUST00000150446 - NO_TRANSLATION retained_intron ENSMUSG00000051557 Pusl1 ENSMUST00000129637 - NO_TRANSLATION retained_intron ENSMUSG00000051557 Pusl1 ENSMUST00000142724 - NO_TRANSLATION retained_intron ENSMUSG00000051557 Pusl1 ENSMUST00000130146 - NO_TRANSLATION retained_intron ENSMUSG00000051557 Pusl1 ENSMUST00000142566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051557 Pusl1 ENSMUST00000123504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078355 Ifna16 ENSMUST00000105148 ENSMUSP00000100779 TRANSLATION protein_coding - CCDS18325.1 - 189.0 3.0 1.0 5.3 204.6 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000028789 Azin2 ENSMUST00000128820 - NO_TRANSLATION retained_intron ENSMUSG00000028789 Azin2 ENSMUST00000106068 ENSMUSP00000101683 TRANSLATION protein_coding - CCDS18678.1 5 459.0 15.0 7.498 14.2 307.4 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000028789 Azin2 ENSMUST00000156739 - NO_TRANSLATION retained_intron ENSMUSG00000028789 Azin2 ENSMUST00000030581 ENSMUSP00000030581 TRANSLATION protein_coding - CCDS18678.1 1 459.0 15.0 7.498 14.2 307.4 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000028789 Azin2 ENSMUST00000143912 - NO_TRANSLATION retained_intron ENSMUSG00000028789 Azin2 ENSMUST00000147731 ENSMUSP00000122240 TRANSLATION protein_coding start/stop - 5 233.0 11.0 4.498 0.0 194.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028789 Azin2 ENSMUST00000119354 ENSMUSP00000114086 TRANSLATION protein_coding - CCDS80159.1 1 323.0 11.0 5.748 0.0 249.8 0.0 -4,-5 0.0035 - 8.382 MINOR ENSMUSG00000041544 Disp3 ENSMUST00000143851 - NO_TRANSLATION retained_intron ENSMUSG00000041544 Disp3 ENSMUST00000129734 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041544 Disp3 ENSMUST00000047720 ENSMUSP00000038490 TRANSLATION protein_coding - CCDS38966.1 5 1347.0 0.0 2.0 0.0 80.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049657 Zbtb5 ENSMUST00000180217 ENSMUSP00000136507 TRANSLATION protein_coding - CCDS18129.1 2 670.0 7.0 0.4 18.5 103.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000049657 Zbtb5 ENSMUST00000107817 ENSMUSP00000103447 TRANSLATION protein_coding - CCDS18129.1 1 670.0 7.0 0.4 18.5 103.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000049657 Zbtb5 ENSMUST00000131991 ENSMUSP00000122991 TRANSLATION protein_coding stop - 2 189.0 0.0 0.4 0.0 103.6 0.0 -4,-5 0.0399 - -2.0 MINOR ENSMUSG00000049657 Zbtb5 ENSMUST00000055028 ENSMUSP00000059919 TRANSLATION protein_coding - CCDS18129.1 1 670.0 7.0 0.4 18.5 103.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000073680 Tmem88b ENSMUST00000097742 ENSMUSP00000095349 TRANSLATION protein_coding - CCDS19040.1 1 173.0 0.0 0.4 1.6 0.0 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000028710 Atpaf1 ENSMUST00000184179 ENSMUSP00000138942 TRANSLATION nonsense_mediated_decay start - 1 271.0 0.0 3.25 0.0 162.1 0.0 -4,-5 0.0168 14 -2.0 MINOR ENSMUSG00000028710 Atpaf1 ENSMUST00000177280 ENSMUSP00000135214 TRANSLATION protein_coding stop - 5 212.0 0.0 1.55 0.0 67.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000028710 Atpaf1 ENSMUST00000175725 ENSMUSP00000135073 TRANSLATION protein_coding - - 5 207.0 0.0 3.25 0.0 153.9 0.0 -4,-5 0.0135 13 6.0 MINOR ENSMUSG00000028710 Atpaf1 ENSMUST00000239030 ENSMUSP00000158943 TRANSLATION protein_coding - - - 324.0 0.0 3.25 0.0 162.1 0.0 -3,-1 0.0571 15 6.0 ALTERNATIVE:2 ENSMUSG00000028710 Atpaf1 ENSMUST00000176192 ENSMUSP00000135741 TRANSLATION protein_coding start - 5 97.0 0.0 1.05 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000028710 Atpaf1 ENSMUST00000137401 ENSMUSP00000135490 TRANSLATION nonsense_mediated_decay start - 3 78.0 0.0 1.1 0.0 32.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000028710 Atpaf1 ENSMUST00000176047 ENSMUSP00000135831 TRANSLATION protein_coding - CCDS18496.2 1 348.0 0.0 3.25 3.9 162.1 0.0 -4,-5 1.0 15 7.0 PRINCIPAL:2 ENSMUSG00000028601 Echdc2 ENSMUST00000126900 ENSMUSP00000123734 TRANSLATION nonsense_mediated_decay start - 5 38.0 5.0 1.33 0.0 39.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028601 Echdc2 ENSMUST00000116307 ENSMUSP00000112009 TRANSLATION protein_coding - - 5 265.0 17.0 6.84 4.2 131.7 0.0 -4,0 0.1902 7 9.828 MINOR ENSMUSG00000028601 Echdc2 ENSMUST00000052999 ENSMUSP00000051268 TRANSLATION protein_coding - CCDS18447.2 1 296.0 22.0 7.84 9.0 199.0 0.0 -4,0 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000028601 Echdc2 ENSMUST00000135718 ENSMUSP00000114371 TRANSLATION protein_coding start/stop - 5 185.0 14.0 5.24 0.0 97.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028601 Echdc2 ENSMUST00000127392 - NO_TRANSLATION retained_intron ENSMUSG00000028601 Echdc2 ENSMUST00000106691 ENSMUSP00000102302 TRANSLATION protein_coding start - 5 119.0 4.0 2.83 0.0 50.5 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000028601 Echdc2 ENSMUST00000130942 ENSMUSP00000124746 TRANSLATION nonsense_mediated_decay - - 5 111.0 9.0 2.55 0.0 45.3 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000028601 Echdc2 ENSMUST00000125647 ENSMUSP00000123913 TRANSLATION nonsense_mediated_decay - - 2 84.0 0.0 0.6 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000028601 Echdc2 ENSMUST00000116309 ENSMUSP00000159913 TRANSLATION protein_coding - CCDS18447.2 1 296.0 22.0 7.84 9.0 199.0 0.0 -4,0 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000028601 Echdc2 ENSMUST00000150487 - NO_TRANSLATION retained_intron ENSMUSG00000028601 Echdc2 ENSMUST00000133049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028601 Echdc2 ENSMUST00000138701 - NO_TRANSLATION retained_intron ENSMUSG00000028601 Echdc2 ENSMUST00000123280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078518 Gm13030 ENSMUST00000105805 ENSMUSP00000101431 TRANSLATION protein_coding - CCDS84812.1 3 143.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.839 - 0.0 PRINCIPAL:1 ENSMUSG00000040359 Ufl1 ENSMUST00000102994 ENSMUSP00000100059 TRANSLATION protein_coding - CCDS18010.1 1 793.0 0.0 0.0 20.8 382.8 0.0 -4,-5 1.0 29 10.0 PRINCIPAL:1 ENSMUSG00000040359 Ufl1 ENSMUST00000132558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040359 Ufl1 ENSMUST00000142949 - NO_TRANSLATION retained_intron ENSMUSG00000040359 Ufl1 ENSMUST00000038705 ENSMUSP00000042118 TRANSLATION protein_coding - - 1 713.0 0.0 0.0 0.0 241.5 0.0 -4,-5 0.0061 22 0.0 MINOR ENSMUSG00000078505 Aadacl4fm4 ENSMUST00000105747 ENSMUSP00000101373 TRANSLATION protein_coding - CCDS38957.1 5 407.0 3.0 3.75 4.9 0.0 0.0 0,-3 1.0 - 11.0 PRINCIPAL:1 ENSMUSG00000028655 Mfsd2a ENSMUST00000152308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028655 Mfsd2a ENSMUST00000030408 ENSMUSP00000030408 TRANSLATION protein_coding - CCDS18605.1 1 534.0 0.0 1.234 9.9 424.2 0.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000028655 Mfsd2a ENSMUST00000138964 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028655 Mfsd2a ENSMUST00000127047 ENSMUSP00000116782 TRANSLATION protein_coding stop - 2 106.0 0.0 0.0 0.0 61.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000028800 Hdac1 ENSMUST00000142984 - NO_TRANSLATION retained_intron ENSMUSG00000028800 Hdac1 ENSMUST00000150105 - NO_TRANSLATION retained_intron ENSMUSG00000028800 Hdac1 ENSMUST00000125718 - NO_TRANSLATION retained_intron ENSMUSG00000028800 Hdac1 ENSMUST00000145628 - NO_TRANSLATION retained_intron ENSMUSG00000028800 Hdac1 ENSMUST00000102597 ENSMUSP00000099657 TRANSLATION protein_coding - CCDS18696.1 1 482.0 3.0 10.25 25.0 278.7 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000028800 Hdac1 ENSMUST00000139305 - NO_TRANSLATION retained_intron ENSMUSG00000028800 Hdac1 ENSMUST00000132909 - NO_TRANSLATION retained_intron ENSMUSG00000028837 Psmb2 ENSMUST00000030642 ENSMUSP00000030642 TRANSLATION protein_coding - CCDS18657.1 1 201.0 0.0 5.25 21.5 140.0 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000028837 Psmb2 ENSMUST00000150372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028837 Psmb2 ENSMUST00000130737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029060 Mib2 ENSMUST00000103176 ENSMUSP00000099465 TRANSLATION protein_coding - CCDS19035.1 1 921.0 0.0 9.854 5.4 377.0 0.0 -4,-5 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000029060 Mib2 ENSMUST00000151843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029060 Mib2 ENSMUST00000155189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029060 Mib2 ENSMUST00000139788 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029060 Mib2 ENSMUST00000139289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029060 Mib2 ENSMUST00000141108 ENSMUSP00000122269 TRANSLATION protein_coding start/stop - 5 375.0 0.0 5.6 0.0 84.2 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000029060 Mib2 ENSMUST00000130237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029060 Mib2 ENSMUST00000128204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029060 Mib2 ENSMUST00000139134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033295 Ptprf ENSMUST00000222620 ENSMUSP00000152568 TRANSLATION protein_coding stop - 5 363.0 0.0 6.58 0.0 155.4 0.0 2,-1 0.0009 4 -2.0 MINOR ENSMUSG00000033295 Ptprf ENSMUST00000123484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033295 Ptprf ENSMUST00000124758 ENSMUSP00000119954 TRANSLATION protein_coding start - 5 1332.0 22.0 15.75 0.0 765.5 3.0 -4,-7 0.0523 30 -2.0 MINOR ENSMUSG00000033295 Ptprf ENSMUST00000150096 ENSMUSP00000117313 TRANSLATION protein_coding start - 5 1291.0 22.0 17.17 0.0 746.3 3.0 -4,-5 0.0515 33 -2.0 MINOR ENSMUSG00000033295 Ptprf ENSMUST00000143348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033295 Ptprf ENSMUST00000127616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033295 Ptprf ENSMUST00000049074 ENSMUSP00000039368 TRANSLATION protein_coding - CCDS18546.1 5 1898.0 22.0 24.0 7.6 1073.5 3.0 2,-1 1.0 41 20.0 PRINCIPAL:1 ENSMUSG00000110439 Mup22 ENSMUST00000211875 ENSMUSP00000148722 TRANSLATION protein_coding - CCDS84742.1 1 181.0 0.0 4.88 0.1 109.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032897 Nfyc ENSMUST00000120779 ENSMUSP00000112810 TRANSLATION protein_coding - CCDS18594.1 5 335.0 0.0 3.915 22.7 75.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000032897 Nfyc ENSMUST00000134979 ENSMUSP00000114640 TRANSLATION protein_coding stop - 5 163.0 0.0 2.165 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032897 Nfyc ENSMUST00000148081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032897 Nfyc ENSMUST00000097906 ENSMUSP00000095516 TRANSLATION protein_coding - CCDS18594.1 1 335.0 0.0 3.915 22.7 75.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000032897 Nfyc ENSMUST00000118902 ENSMUSP00000112610 TRANSLATION protein_coding - CCDS18594.1 1 335.0 0.0 3.915 22.7 75.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000032897 Nfyc ENSMUST00000127030 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032897 Nfyc ENSMUST00000145658 ENSMUSP00000114591 TRANSLATION protein_coding stop - 3 53.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032897 Nfyc ENSMUST00000043429 ENSMUSP00000047441 TRANSLATION protein_coding - CCDS18594.1 1 335.0 0.0 3.915 22.7 75.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000032897 Nfyc ENSMUST00000136236 ENSMUSP00000117646 TRANSLATION protein_coding stop - 5 98.0 0.0 2.915 0.0 22.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032897 Nfyc ENSMUST00000145029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035495 Tstd2 ENSMUST00000137399 - NO_TRANSLATION retained_intron ENSMUSG00000035495 Tstd2 ENSMUST00000107772 ENSMUSP00000103401 TRANSLATION protein_coding - CCDS38757.1 1 495.0 4.0 1.85 1.6 91.3 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000035495 Tstd2 ENSMUST00000156021 ENSMUSP00000117865 TRANSLATION protein_coding stop - 3 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035495 Tstd2 ENSMUST00000144495 ENSMUSP00000117990 TRANSLATION protein_coding stop - 3 108.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 2 -2.0 MINOR ENSMUSG00000035495 Tstd2 ENSMUST00000147837 ENSMUSP00000115473 TRANSLATION protein_coding stop - 2 129.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 2 -2.0 MINOR ENSMUSG00000035495 Tstd2 ENSMUST00000107770 ENSMUSP00000103399 TRANSLATION protein_coding - CCDS38757.1 1 495.0 4.0 1.85 1.6 91.3 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000035495 Tstd2 ENSMUST00000160008 - NO_TRANSLATION retained_intron ENSMUSG00000035495 Tstd2 ENSMUST00000129929 ENSMUSP00000125707 TRANSLATION protein_coding stop - 5 150.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028443 Nudt2 ENSMUST00000030154 ENSMUSP00000030154 TRANSLATION protein_coding - CCDS18061.1 1 147.0 10.0 2.0 19.5 78.8 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028683 Eif2b3 ENSMUST00000106447 ENSMUSP00000102055 TRANSLATION protein_coding - CCDS18524.1 1 445.0 19.0 7.1 0.0 0.0 0.0 -4,-6 0.1575 14 8.7 MINOR ENSMUSG00000028683 Eif2b3 ENSMUST00000151760 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028683 Eif2b3 ENSMUST00000070610 ENSMUSP00000070334 TRANSLATION protein_coding - - 5 401.0 19.0 7.35 3.0 0.0 0.0 -4,-6 0.1231 14 9.578 MINOR ENSMUSG00000028683 Eif2b3 ENSMUST00000129587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028683 Eif2b3 ENSMUST00000155181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028683 Eif2b3 ENSMUST00000106448 ENSMUSP00000102056 TRANSLATION protein_coding - CCDS51279.1 5 452.0 19.0 8.75 22.0 0.0 0.0 -4,-6 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000028683 Eif2b3 ENSMUST00000135121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028357 Kif12 ENSMUST00000124739 ENSMUSP00000152245 TRANSLATION nonsense_mediated_decay - - 5 176.0 10.0 2.97 0.0 87.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028357 Kif12 ENSMUST00000156618 ENSMUSP00000152690 TRANSLATION protein_coding - - 5 643.0 11.0 6.935 0.4 298.4 0.0 -4,-5 0.6259 - 14.0 ALTERNATIVE:2 ENSMUSG00000028357 Kif12 ENSMUST00000131760 - NO_TRANSLATION retained_intron ENSMUSG00000028357 Kif12 ENSMUST00000154234 ENSMUSP00000152856 TRANSLATION nonsense_mediated_decay start - 5 95.0 0.0 0.48 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000028357 Kif12 ENSMUST00000030042 ENSMUSP00000030042 TRANSLATION protein_coding - CCDS18249.1 1 642.0 11.0 6.935 1.4 298.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:2 ENSMUSG00000047777 Phf13 ENSMUST00000055688 ENSMUSP00000062590 TRANSLATION protein_coding - CCDS51388.1 1 296.0 8.0 1.0 6.8 31.1 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000028637 Ccdc30 ENSMUST00000238719 ENSMUSP00000158598 TRANSLATION protein_coding - - - 156.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000084307 ENSMUSP00000081332 TRANSLATION protein_coding - CCDS57292.1 1 239.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.058 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000238485 ENSMUSP00000158814 TRANSLATION protein_coding - CCDS57292.1 - 239.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.058 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000154606 ENSMUSP00000158729 TRANSLATION protein_coding - - 1 172.0 0.0 0.0 0.1 82.9 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000135997 - NO_TRANSLATION retained_intron ENSMUSG00000028637 Ccdc30 ENSMUST00000127474 ENSMUSP00000158694 TRANSLATION protein_coding - - 1 156.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000148236 ENSMUSP00000158735 TRANSLATION protein_coding - - 5 197.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000238779 ENSMUSP00000158811 TRANSLATION protein_coding start - - 308.0 0.0 0.0 0.0 252.6 0.0 -4,-5 0.0019 - -2.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000238293 ENSMUSP00000158680 TRANSLATION protein_coding - - - 649.0 0.0 0.0 0.4 505.1 0.0 -4,-2 0.3645 - 2.0 ALTERNATIVE:2 ENSMUSG00000028637 Ccdc30 ENSMUST00000238422 ENSMUSP00000158652 TRANSLATION protein_coding - - - 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000238697 ENSMUSP00000158783 TRANSLATION protein_coding - - - 711.0 0.0 0.0 0.4 505.1 0.0 -4,-5 0.1249 - 2.0 ALTERNATIVE:2 ENSMUSG00000028637 Ccdc30 ENSMUST00000238759 ENSMUSP00000158825 TRANSLATION protein_coding - CCDS38861.1 - 654.0 0.0 0.0 0.4 505.1 0.0 -4,-2 0.6935 - 2.0 ALTERNATIVE:2 ENSMUSG00000028637 Ccdc30 ENSMUST00000238704 ENSMUSP00000158622 TRANSLATION protein_coding stop - - 586.0 0.0 0.0 0.0 498.5 0.0 -4,-5 0.0962 - -2.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000063642 ENSMUSP00000070621 TRANSLATION protein_coding - - 1 652.0 0.0 0.0 0.4 505.1 0.0 -4,-2 0.7742 - 2.0 PRINCIPAL:4 ENSMUSG00000028637 Ccdc30 ENSMUST00000152879 ENSMUSP00000158630 TRANSLATION protein_coding - - 1 115.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000127149 ENSMUSP00000158782 TRANSLATION protein_coding - - 1 222.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000131141 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028637 Ccdc30 ENSMUST00000143494 ENSMUSP00000118202 TRANSLATION protein_coding - - 3 197.0 0.0 0.0 0.0 252.6 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000238723 ENSMUSP00000158653 TRANSLATION protein_coding - - - 172.0 0.0 0.0 0.1 82.9 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000238609 ENSMUSP00000158712 TRANSLATION protein_coding - - - 172.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000044781 ENSMUSP00000047534 TRANSLATION protein_coding - - 1 309.0 0.0 0.0 0.0 253.3 0.0 -4,-5 0.0019 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000238673 ENSMUSP00000158764 TRANSLATION protein_coding - - - 156.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000238300 - NO_TRANSLATION retained_intron ENSMUSG00000028637 Ccdc30 ENSMUST00000124048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028637 Ccdc30 ENSMUST00000238511 - NO_TRANSLATION retained_intron ENSMUSG00000028637 Ccdc30 ENSMUST00000238559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028637 Ccdc30 ENSMUST00000238287 ENSMUSP00000158749 TRANSLATION protein_coding - - - 172.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000028637 Ccdc30 ENSMUST00000146186 - NO_TRANSLATION retained_intron ENSMUSG00000028637 Ccdc30 ENSMUST00000238721 ENSMUSP00000158701 TRANSLATION protein_coding - CCDS57292.1 - 239.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.058 - 0.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000187937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041459 Tardbp ENSMUST00000185824 ENSMUSP00000140110 TRANSLATION protein_coding start - 5 200.0 0.0 5.99 0.0 94.6 0.0 -4,-5 0.0017 6 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000186711 ENSMUSP00000140057 TRANSLATION protein_coding start - 3 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000190630 ENSMUSP00000140385 TRANSLATION protein_coding start - 2 85.0 0.0 2.33 0.0 25.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000187939 ENSMUSP00000140928 TRANSLATION protein_coding start - 5 128.0 0.0 3.41 0.0 38.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000185673 ENSMUSP00000141010 TRANSLATION protein_coding stop - 5 149.0 0.0 2.83 0.0 42.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000140897 ENSMUSP00000135135 TRANSLATION nonsense_mediated_decay start - 5 140.0 0.0 4.16 0.0 38.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000084125 ENSMUSP00000081142 TRANSLATION protein_coding - CCDS38971.1 1 414.0 0.0 9.49 14.9 94.0 0.0 -4,-5 1.0 11 15.964 PRINCIPAL:1 ENSMUSG00000041459 Tardbp ENSMUST00000147391 ENSMUSP00000140333 TRANSLATION nonsense_mediated_decay start - 2 35.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000095719 ENSMUSP00000093386 TRANSLATION protein_coding - CCDS38968.1 1 304.0 0.0 6.99 2.9 94.0 0.0 -4,-5 0.204 10 7.514 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000188380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041459 Tardbp ENSMUST00000190552 ENSMUSP00000141052 TRANSLATION nonsense_mediated_decay start - 5 175.0 0.0 4.99 0.0 73.8 0.0 -4,-5 0.0004 5 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000186947 ENSMUSP00000140529 TRANSLATION protein_coding stop - 5 243.0 0.0 5.24 0.0 55.9 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000189041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041459 Tardbp ENSMUST00000191450 ENSMUSP00000140832 TRANSLATION nonsense_mediated_decay - - 5 285.0 0.0 6.99 0.1 94.0 0.0 -4,-5 0.0174 10 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000105702 ENSMUSP00000101327 TRANSLATION protein_coding - CCDS38967.1 5 302.0 0.0 6.99 0.8 94.0 0.0 -4,-5 0.1081 10 6.966 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000105700 ENSMUSP00000101325 TRANSLATION protein_coding - CCDS38967.1 1 302.0 0.0 6.99 0.8 94.0 0.0 -4,-5 0.1081 10 6.966 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000190287 ENSMUSP00000140859 TRANSLATION nonsense_mediated_decay start - 5 78.0 0.0 2.58 0.0 38.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000186317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041459 Tardbp ENSMUST00000045180 ENSMUSP00000038113 TRANSLATION nonsense_mediated_decay - CCDS38969.1 1 298.0 0.0 6.99 2.6 94.0 0.0 -4,-5 0.1348 - -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000105699 ENSMUSP00000101324 TRANSLATION protein_coding - CCDS38970.1 1 295.0 0.0 6.99 2.9 94.0 0.0 -4,-5 0.2001 10 7.514 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000188488 ENSMUSP00000140989 TRANSLATION protein_coding start - 5 99.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000186729 ENSMUSP00000139547 TRANSLATION nonsense_mediated_decay start - 5 88.0 0.0 2.33 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000165113 ENSMUSP00000129342 TRANSLATION protein_coding - CCDS38969.1 5 298.0 0.0 6.99 2.6 94.0 0.0 -4,-5 0.1348 10 7.426 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000172073 ENSMUSP00000130963 TRANSLATION protein_coding - CCDS38968.1 5 304.0 0.0 6.99 2.9 94.0 0.0 -4,-5 0.204 10 7.514 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000188134 ENSMUSP00000139476 TRANSLATION nonsense_mediated_decay - CCDS38969.1 5 298.0 0.0 6.99 2.6 94.0 0.0 -4,-5 0.1348 - -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000191378 ENSMUSP00000140718 TRANSLATION nonsense_mediated_decay start - 5 138.0 0.0 4.16 0.0 38.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000190696 ENSMUSP00000139637 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000041459 Tardbp ENSMUST00000190478 - NO_TRANSLATION retained_intron ENSMUSG00000041459 Tardbp ENSMUST00000189048 ENSMUSP00000140364 TRANSLATION protein_coding - CCDS38969.1 1 298.0 0.0 6.99 2.6 94.0 0.0 -4,-5 0.1348 10 7.426 MINOR ENSMUSG00000051675 Trim32 ENSMUST00000107366 ENSMUSP00000102989 TRANSLATION protein_coding - CCDS18270.1 1 655.0 15.0 1.35 10.5 138.1 0.0 -4,-6 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000051675 Trim32 ENSMUST00000156922 ENSMUSP00000121949 TRANSLATION protein_coding stop - 5 183.0 15.0 1.25 0.0 69.9 0.0 -4,-6 0.0008 5 -2.0 MINOR ENSMUSG00000051675 Trim32 ENSMUST00000155978 ENSMUSP00000119579 TRANSLATION protein_coding stop - 3 136.0 15.0 1.0 0.0 46.4 0.0 -4,-6 0.0005 4 -2.0 MINOR ENSMUSG00000051675 Trim32 ENSMUST00000050850 ENSMUSP00000062277 TRANSLATION protein_coding - CCDS18270.1 1 655.0 15.0 1.35 10.5 138.1 0.0 -4,-6 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000046133 C130073F10Rik ENSMUST00000051043 ENSMUSP00000059092 TRANSLATION protein_coding - - 1 201.0 0.0 1.4 0.0 0.0 0.0 -4,-7 0.6748 - 6.0 PRINCIPAL:1 ENSMUSG00000046133 C130073F10Rik ENSMUST00000249088 ENSMUSP00000159569 TRANSLATION protein_coding - - - 201.0 0.0 1.4 0.0 0.0 0.0 -4,-7 0.6748 - 6.0 PRINCIPAL:1 ENSMUSG00000028580 Pum1 ENSMUST00000105992 ENSMUSP00000101613 TRANSLATION protein_coding - CCDS51313.1 1 1092.0 0.0 7.8 10.5 225.6 0.0 -4,-7 0.8597 10 10.236 MINOR ENSMUSG00000028580 Pum1 ENSMUST00000105991 ENSMUSP00000101612 TRANSLATION protein_coding - CCDS51314.1 1 944.0 0.0 7.8 6.3 227.3 0.0 -4,-7 0.5471 9 9.36 MINOR ENSMUSG00000028580 Pum1 ENSMUST00000122847 - NO_TRANSLATION retained_intron ENSMUSG00000028580 Pum1 ENSMUST00000143277 ENSMUSP00000114629 TRANSLATION protein_coding stop - 5 218.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 2 -2.0 MINOR ENSMUSG00000028580 Pum1 ENSMUST00000097862 ENSMUSP00000095474 TRANSLATION protein_coding - CCDS51312.1 1 1188.0 0.0 7.8 16.6 225.6 0.0 -4,-7 0.9939 14 11.8 ALTERNATIVE:1 ENSMUSG00000028580 Pum1 ENSMUST00000030315 ENSMUSP00000030315 TRANSLATION protein_coding - CCDS18710.1 1 1189.0 0.0 7.8 16.6 225.6 0.0 -4,-7 0.9935 14 11.8 ALTERNATIVE:1 ENSMUSG00000028580 Pum1 ENSMUST00000097864 ENSMUSP00000095476 TRANSLATION protein_coding - CCDS51311.1 1 1186.0 0.0 7.8 16.6 227.3 0.0 -4,-7 1.0 14 12.0 PRINCIPAL:4 ENSMUSG00000006445 Epha2 ENSMUST00000149002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006445 Epha2 ENSMUST00000145523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006445 Epha2 ENSMUST00000006614 ENSMUSP00000006614 TRANSLATION protein_coding - CCDS18869.1 1 977.0 18.0 12.98 7.6 806.8 0.0 2,-2 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000006445 Epha2 ENSMUST00000131026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066150 Slc31a1 ENSMUST00000084526 ENSMUSP00000081574 TRANSLATION protein_coding - CCDS18237.1 1 196.0 0.0 2.35 0.4 107.6 3.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000066150 Slc31a1 ENSMUST00000122092 ENSMUSP00000112822 TRANSLATION protein_coding - - 1 130.0 0.0 1.35 0.0 43.2 1.0 -4,-5 0.0025 1 5.58 MINOR ENSMUSG00000039579 Grin3a ENSMUST00000093859 ENSMUSP00000091381 TRANSLATION protein_coding - CCDS71385.1 1 1135.0 11.0 3.3635 0.1 220.0 3.0 2,-2 1.0 4 12.0 PRINCIPAL:2 ENSMUSG00000039579 Grin3a ENSMUST00000076674 ENSMUSP00000075970 TRANSLATION protein_coding - CCDS51175.1 1 1115.0 11.0 3.215 0.0 220.0 3.0 2,-2 0.5887 4 11.7 ALTERNATIVE:2 ENSMUSG00000039579 Grin3a ENSMUST00000131797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039579 Grin3a ENSMUST00000149059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028551 Cdkn2c ENSMUST00000063531 ENSMUSP00000070313 TRANSLATION protein_coding - CCDS18467.1 1 168.0 0.0 2.0 13.2 67.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000028551 Cdkn2c ENSMUST00000097921 ENSMUSP00000095534 TRANSLATION protein_coding - CCDS18467.1 1 168.0 0.0 2.0 13.2 67.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000049648 Or13c3 ENSMUST00000215274 ENSMUSP00000149869 TRANSLATION nonsense_mediated_decay - CCDS18184.1 5 317.0 0.0 1.0 12.5 187.2 7.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000049648 Or13c3 ENSMUST00000107670 ENSMUSP00000103297 TRANSLATION protein_coding - CCDS18184.1 5 317.0 0.0 1.0 12.5 187.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049648 Or13c3 ENSMUST00000051520 ENSMUSP00000052080 TRANSLATION protein_coding - CCDS18184.1 - 317.0 0.0 1.0 12.5 187.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000086322 Zfp593os ENSMUST00000143448 ENSMUSP00000145831 TRANSLATION protein_coding - - 3 63.0 0.0 0.8 1.0 0.0 1.0 -4,-1 0.6739 - 6.0 PRINCIPAL:1 ENSMUSG00000086322 Zfp593os ENSMUST00000122952 ENSMUSP00000145835 TRANSLATION protein_coding - - 1 63.0 0.0 0.8 1.0 0.0 1.0 -4,-1 0.6739 - 6.0 PRINCIPAL:1 ENSMUSG00000086322 Zfp593os ENSMUST00000144222 ENSMUSP00000146054 TRANSLATION protein_coding - - 1 63.0 0.0 0.8 1.0 0.0 1.0 -4,-1 0.6739 - 6.0 PRINCIPAL:1 ENSMUSG00000086322 Zfp593os ENSMUST00000135228 ENSMUSP00000146110 TRANSLATION protein_coding - - 3 63.0 0.0 0.8 1.0 0.0 1.0 -4,-1 0.6739 - 6.0 PRINCIPAL:1 ENSMUSG00000086322 Zfp593os ENSMUST00000131447 ENSMUSP00000145849 TRANSLATION protein_coding - - 5 63.0 0.0 0.8 1.0 0.0 1.0 -4,-1 0.6739 - 6.0 PRINCIPAL:1 ENSMUSG00000086322 Zfp593os ENSMUST00000125921 ENSMUSP00000145784 TRANSLATION protein_coding - - 2 63.0 0.0 0.8 1.0 0.0 1.0 -4,-1 0.6739 - 6.0 PRINCIPAL:1 ENSMUSG00000086322 Zfp593os ENSMUST00000134320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086322 Zfp593os ENSMUST00000124452 ENSMUSP00000145705 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 0.8 1.0 0.0 1.0 -4,-1 0.6739 - -2.0 MINOR ENSMUSG00000046093 Hpcal4 ENSMUST00000136619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046093 Hpcal4 ENSMUST00000106246 ENSMUSP00000101853 TRANSLATION protein_coding - CCDS18611.1 5 191.0 22.0 4.25 36.9 90.1 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000046093 Hpcal4 ENSMUST00000126995 ENSMUSP00000122104 TRANSLATION protein_coding stop - 3 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046093 Hpcal4 ENSMUST00000059667 ENSMUSP00000051487 TRANSLATION protein_coding - CCDS18611.1 1 191.0 22.0 4.25 36.9 90.1 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000046093 Hpcal4 ENSMUST00000152194 ENSMUSP00000120066 TRANSLATION protein_coding stop - 1 155.0 15.0 3.25 0.0 52.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000028532 Cachd1 ENSMUST00000097955 ENSMUSP00000095568 TRANSLATION protein_coding - - 1 1210.0 0.0 2.43 0.0 92.4 1.0 -4,-6 0.2258 17 12.0 MINOR ENSMUSG00000028532 Cachd1 ENSMUST00000030257 ENSMUSP00000030257 TRANSLATION protein_coding - CCDS18391.1 1 1288.0 0.0 2.43 4.2 92.4 1.0 -4,-6 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000028532 Cachd1 ENSMUST00000136430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028532 Cachd1 ENSMUST00000123475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028364 Tnc ENSMUST00000107377 ENSMUSP00000103000 TRANSLATION protein_coding - CCDS18265.1 1 2019.0 3.0 19.5 6.6 1064.5 0.0 0,-4 1.0 38 14.618 MINOR ENSMUSG00000028364 Tnc ENSMUST00000107372 ENSMUSP00000102995 TRANSLATION protein_coding - - 5 2110.0 3.0 19.7 4.4 1097.5 0.0 0,-4 0.9105 39 16.214 PRINCIPAL:1 ENSMUSG00000028364 Tnc ENSMUST00000030056 ENSMUSP00000030056 TRANSLATION protein_coding - CCDS18265.1 1 2019.0 3.0 19.5 6.6 1064.5 0.0 0,-4 1.0 38 14.618 MINOR ENSMUSG00000028364 Tnc ENSMUST00000107371 ENSMUSP00000102994 TRANSLATION protein_coding - - 5 832.0 0.0 2.96 0.0 306.1 0.0 0,-4 0.0028 13 0.0 MINOR ENSMUSG00000046312 Myorg ENSMUST00000054920 ENSMUSP00000059038 TRANSLATION protein_coding - CCDS38716.1 1 716.0 0.0 1.0 10.3 184.8 0.0 -4,-2 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000046312 Myorg ENSMUST00000149596 ENSMUSP00000122357 TRANSLATION protein_coding stop - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000028494 Plin2 ENSMUST00000147097 ENSMUSP00000119063 TRANSLATION protein_coding stop - 5 157.0 0.0 0.198 0.0 165.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000028494 Plin2 ENSMUST00000134437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028494 Plin2 ENSMUST00000134094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028494 Plin2 ENSMUST00000000466 ENSMUSP00000000466 TRANSLATION protein_coding - CCDS18308.1 1 425.0 0.0 0.462 0.4 506.7 0.0 -4,-6 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000028494 Plin2 ENSMUST00000154999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028494 Plin2 ENSMUST00000149700 ENSMUSP00000123333 TRANSLATION protein_coding stop - 2 196.0 0.0 0.0 0.0 274.4 0.0 -4,-6 0.0011 6 -2.0 MINOR ENSMUSG00000028494 Plin2 ENSMUST00000140382 ENSMUSP00000123456 TRANSLATION protein_coding stop - 3 196.0 0.0 0.0 0.0 274.4 0.0 -4,-6 0.0011 6 -2.0 MINOR ENSMUSG00000028494 Plin2 ENSMUST00000138605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028378 Ptgr1 ENSMUST00000030069 ENSMUSP00000030069 TRANSLATION protein_coding - CCDS18215.1 1 329.0 25.0 8.0 28.6 213.4 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000066061 Or10ak12 ENSMUST00000084313 ENSMUSP00000081339 TRANSLATION protein_coding - - - 319.0 0.0 1.0 6.8 188.0 6.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000066061 Or10ak12 ENSMUST00000219094 ENSMUSP00000151219 TRANSLATION protein_coding - CCDS18562.1 - 335.0 0.0 1.0 0.0 188.0 6.0 -4,-2 0.3708 - 12.0 MINOR ENSMUSG00000028759 Hp1bp3 ENSMUST00000130071 ENSMUSP00000123467 TRANSLATION protein_coding stop - 3 85.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000028759 Hp1bp3 ENSMUST00000155344 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028759 Hp1bp3 ENSMUST00000137865 ENSMUSP00000117216 TRANSLATION protein_coding stop - 3 150.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000028759 Hp1bp3 ENSMUST00000154581 - NO_TRANSLATION retained_intron ENSMUSG00000028759 Hp1bp3 ENSMUST00000105826 ENSMUSP00000101452 TRANSLATION protein_coding - - 5 554.0 0.0 2.48 6.4 174.1 0.0 -4,-6 0.8408 18 10.0 ALTERNATIVE:1 ENSMUSG00000028759 Hp1bp3 ENSMUST00000097836 ENSMUSP00000095447 TRANSLATION protein_coding - CCDS51334.1 1 516.0 0.0 2.48 3.7 172.6 0.0 -4,-7 0.6815 16 9.0 ALTERNATIVE:2 ENSMUSG00000028759 Hp1bp3 ENSMUST00000124305 ENSMUSP00000120587 TRANSLATION protein_coding stop - 5 165.0 0.0 1.73 0.0 39.5 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000028759 Hp1bp3 ENSMUST00000137851 ENSMUSP00000118913 TRANSLATION protein_coding stop - 5 208.0 0.0 2.48 0.0 65.5 0.0 -4,-7 0.0274 6 -2.0 MINOR ENSMUSG00000028759 Hp1bp3 ENSMUST00000105825 ENSMUSP00000101451 TRANSLATION protein_coding - - 5 516.0 0.0 2.48 3.7 174.1 0.0 -4,-7 0.5604 16 9.0 ALTERNATIVE:2 ENSMUSG00000028759 Hp1bp3 ENSMUST00000105827 ENSMUSP00000101453 TRANSLATION protein_coding - - 5 554.0 0.0 2.48 6.4 174.1 0.0 -4,-6 0.8408 18 10.0 ALTERNATIVE:1 ENSMUSG00000028759 Hp1bp3 ENSMUST00000030541 ENSMUSP00000030541 TRANSLATION protein_coding - CCDS38927.1 1 554.0 0.0 2.48 6.4 172.6 0.0 -4,-6 1.0 18 10.0 PRINCIPAL:4 ENSMUSG00000028759 Hp1bp3 ENSMUST00000165861 ENSMUSP00000132614 TRANSLATION protein_coding - CCDS38927.1 1 554.0 0.0 2.48 6.4 172.6 0.0 -4,-6 1.0 18 10.0 PRINCIPAL:4 ENSMUSG00000028759 Hp1bp3 ENSMUST00000142420 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028759 Hp1bp3 ENSMUST00000148681 ENSMUSP00000122005 TRANSLATION protein_coding stop - 2 292.0 0.0 1.948 0.0 161.1 0.0 -4,-2 0.0028 13 -2.0 MINOR ENSMUSG00000028684 Urod ENSMUST00000135164 - NO_TRANSLATION retained_intron ENSMUSG00000028684 Urod ENSMUST00000130273 ENSMUSP00000116154 TRANSLATION protein_coding stop - 3 120.0 7.0 2.33 0.0 58.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028684 Urod ENSMUST00000150370 - NO_TRANSLATION retained_intron ENSMUSG00000028684 Urod ENSMUST00000139209 - NO_TRANSLATION retained_intron ENSMUSG00000028684 Urod ENSMUST00000123079 - NO_TRANSLATION retained_intron ENSMUSG00000028684 Urod ENSMUST00000139816 - NO_TRANSLATION retained_intron ENSMUSG00000028684 Urod ENSMUST00000030446 ENSMUSP00000030446 TRANSLATION protein_coding - CCDS18521.1 1 367.0 25.0 8.33 16.8 445.8 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000028684 Urod ENSMUST00000134598 - NO_TRANSLATION retained_intron ENSMUSG00000028684 Urod ENSMUST00000153629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028684 Urod ENSMUST00000127635 - NO_TRANSLATION retained_intron ENSMUSG00000028291 Akirin2 ENSMUST00000132230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028291 Akirin2 ENSMUST00000084299 ENSMUSP00000081322 TRANSLATION protein_coding - CCDS18027.1 1 201.0 0.0 1.1 11.3 0.0 0.0 -2,0 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000040842 Szrd1 ENSMUST00000102487 ENSMUSP00000099545 TRANSLATION protein_coding - CCDS18864.1 1 152.0 0.0 0.0 26.9 88.6 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000040842 Szrd1 ENSMUST00000148204 ENSMUSP00000115949 TRANSLATION protein_coding start - 2 146.0 0.0 0.0 0.0 88.6 0.0 -4,-5 0.0477 5 -2.0 MINOR ENSMUSG00000040842 Szrd1 ENSMUST00000128444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040842 Szrd1 ENSMUST00000039939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040842 Szrd1 ENSMUST00000094549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078532 Nkain1 ENSMUST00000180884 ENSMUSP00000138045 TRANSLATION nonsense_mediated_decay - - 5 102.0 0.0 1.75 0.0 165.8 3.0 2,-3 0.0408 - -2.0 MINOR ENSMUSG00000078532 Nkain1 ENSMUST00000180498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078532 Nkain1 ENSMUST00000105993 ENSMUSP00000101614 TRANSLATION protein_coding - CCDS57302.1 1 207.0 0.0 1.75 33.7 340.3 4.0 2,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000043257 Pigv ENSMUST00000067902 ENSMUSP00000065601 TRANSLATION protein_coding - CCDS51322.1 1 119.0 0.0 -0.35 1.9 72.4 1.0 -4,-7 0.0709 - 0.387 MINOR ENSMUSG00000043257 Pigv ENSMUST00000151837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043257 Pigv ENSMUST00000062118 ENSMUSP00000050647 TRANSLATION protein_coding - CCDS18755.1 1 493.0 0.0 -0.05 8.0 587.8 6.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000028832 Stmn1 ENSMUST00000030636 ENSMUSP00000030636 TRANSLATION protein_coding - CCDS18772.1 1 149.0 0.0 3.05 23.7 203.4 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000028832 Stmn1 ENSMUST00000105868 ENSMUSP00000101494 TRANSLATION protein_coding - CCDS18772.1 1 149.0 0.0 3.05 23.7 203.4 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000028832 Stmn1 ENSMUST00000105867 ENSMUSP00000101493 TRANSLATION protein_coding - - 5 147.0 0.0 2.55 0.0 186.1 0.0 -4,-5 0.0139 4 9.96 MINOR ENSMUSG00000028832 Stmn1 ENSMUST00000130253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028832 Stmn1 ENSMUST00000127279 ENSMUSP00000119547 TRANSLATION protein_coding stop - 5 102.0 0.0 1.8 0.0 149.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028389 Zfp37 ENSMUST00000068822 ENSMUSP00000070463 TRANSLATION protein_coding - CCDS71400.1 1 594.0 48.0 1.6 0.0 326.0 0.0 -4,-5 0.553 4 13.8 ALTERNATIVE:2 ENSMUSG00000028389 Zfp37 ENSMUST00000220873 ENSMUSP00000152520 TRANSLATION protein_coding - - 5 553.0 48.0 1.6 0.0 293.9 0.0 -4,-5 0.1419 3 13.8 MINOR ENSMUSG00000028389 Zfp37 ENSMUST00000222050 ENSMUSP00000152491 TRANSLATION protein_coding - - 1 590.0 48.0 1.6 0.0 326.2 0.0 -4,-5 0.8363 4 14.0 PRINCIPAL:2 ENSMUSG00000028389 Zfp37 ENSMUST00000221329 ENSMUSP00000152266 TRANSLATION protein_coding - - 2 591.0 48.0 1.6 0.0 326.0 0.0 -4,-5 0.5498 4 13.8 ALTERNATIVE:2 ENSMUSG00000028389 Zfp37 ENSMUST00000222748 ENSMUSP00000152400 TRANSLATION protein_coding - - 2 553.0 48.0 1.6 0.0 293.9 0.0 -4,-5 0.1419 3 13.8 MINOR ENSMUSG00000028389 Zfp37 ENSMUST00000129511 ENSMUSP00000152291 TRANSLATION protein_coding - - 5 240.0 33.0 1.0 0.0 203.0 0.0 -4,-5 0.0011 2 3.75 MINOR ENSMUSG00000028389 Zfp37 ENSMUST00000212325 ENSMUSP00000148492 TRANSLATION protein_coding stop - 5 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047875 Gpr157 ENSMUST00000094451 ENSMUSP00000092020 TRANSLATION protein_coding - CCDS38977.1 1 330.0 0.0 -0.184 5.2 47.4 0.0 -2,-4 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000028278 Rragd ENSMUST00000136792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028278 Rragd ENSMUST00000084747 ENSMUSP00000081799 TRANSLATION protein_coding - - 5 279.0 7.0 4.6 0.0 133.3 0.0 -4,0 0.0006 3 4.002 MINOR ENSMUSG00000028278 Rragd ENSMUST00000029946 ENSMUSP00000029946 TRANSLATION protein_coding - - 5 454.0 19.0 5.6 0.0 241.1 0.0 -4,-5 0.0424 4 18.0 MINOR ENSMUSG00000028278 Rragd ENSMUST00000098190 ENSMUSP00000095792 TRANSLATION protein_coding - CCDS38704.1 2 399.0 19.0 5.6 11.1 241.1 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000040296 Rigi ENSMUST00000137903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040296 Rigi ENSMUST00000149539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040296 Rigi ENSMUST00000127026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040296 Rigi ENSMUST00000140616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040296 Rigi ENSMUST00000139110 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040296 Rigi ENSMUST00000037907 ENSMUSP00000042433 TRANSLATION protein_coding - CCDS18043.1 1 926.0 21.0 17.9 6.3 424.1 0.0 -4,-5 1.0 26 20.0 PRINCIPAL:1 ENSMUSG00000040296 Rigi ENSMUST00000142055 ENSMUSP00000115052 TRANSLATION protein_coding stop - 5 707.0 9.0 14.15 0.0 203.2 0.0 -4,-5 0.0007 18 -2.0 MINOR ENSMUSG00000040296 Rigi ENSMUST00000139583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040296 Rigi ENSMUST00000136435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040296 Rigi ENSMUST00000135966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028980 H6pd ENSMUST00000152907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028980 H6pd ENSMUST00000084117 ENSMUSP00000081134 TRANSLATION protein_coding - CCDS71524.1 1 789.0 10.0 2.68 11.5 526.2 0.0 4,-1 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000028980 H6pd ENSMUST00000030830 ENSMUSP00000030830 TRANSLATION protein_coding - CCDS18967.1 1 797.0 10.0 2.68 6.2 526.2 0.0 4,-1 0.8509 22 19.485 MINOR ENSMUSG00000028980 H6pd ENSMUST00000153394 ENSMUSP00000115647 TRANSLATION protein_coding stop - 3 171.0 8.0 0.4 0.0 58.6 0.0 4,-1 0.0 7 -2.0 MINOR ENSMUSG00000078496 Zfp982 ENSMUST00000063704 ENSMUSP00000068021 TRANSLATION protein_coding - CCDS84824.1 3 368.0 37.0 1.066 0.0 245.4 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078496 Zfp982 ENSMUST00000105721 ENSMUSP00000101346 TRANSLATION protein_coding - CCDS84824.1 3 368.0 37.0 1.066 0.0 245.4 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000059713 Rcan3 ENSMUST00000132654 ENSMUSP00000114220 TRANSLATION protein_coding start - 3 137.0 0.0 2.58 0.0 168.0 0.0 -4,-5 0.0002 3 -2.0 MINOR ENSMUSG00000059713 Rcan3 ENSMUST00000030606 ENSMUSP00000030606 TRANSLATION protein_coding - CCDS18785.1 1 239.0 0.0 3.08 10.7 214.9 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000059713 Rcan3 ENSMUST00000156635 ENSMUSP00000118447 TRANSLATION protein_coding stop - 5 159.0 0.0 1.83 0.0 137.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039270 Megf9 ENSMUST00000037881 ENSMUSP00000040801 TRANSLATION nonsense_mediated_decay - - 3 295.0 0.0 0.25 0.0 40.2 0.0 1,-2 0.0014 - -2.0 MINOR ENSMUSG00000039270 Megf9 ENSMUST00000107359 ENSMUSP00000102982 TRANSLATION protein_coding - CCDS18273.1 1 600.0 0.0 1.45 2.2 155.3 0.0 1,-2 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000070877 Ldlrad1 ENSMUST00000094916 ENSMUSP00000092521 TRANSLATION protein_coding - CCDS38830.1 5 218.0 7.0 0.0 0.4 29.2 0.0 -4,-7 0.9889 1 12.0 PRINCIPAL:1 ENSMUSG00000028467 Gba2 ENSMUST00000128403 - NO_TRANSLATION retained_intron ENSMUSG00000028467 Gba2 ENSMUST00000130443 ENSMUSP00000119589 TRANSLATION protein_coding stop - 5 230.0 0.0 3.5 0.0 50.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000028467 Gba2 ENSMUST00000152251 - NO_TRANSLATION retained_intron ENSMUSG00000028467 Gba2 ENSMUST00000144968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028467 Gba2 ENSMUST00000139606 - NO_TRANSLATION retained_intron ENSMUSG00000028467 Gba2 ENSMUST00000030189 ENSMUSP00000030189 TRANSLATION protein_coding - CCDS18103.1 1 918.0 0.0 17.1 4.0 901.3 0.0 -4,-5 1.0 19 14.0 PRINCIPAL:1 ENSMUSG00000028467 Gba2 ENSMUST00000148426 - NO_TRANSLATION retained_intron ENSMUSG00000028211 Trp53inp1 ENSMUST00000132346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028211 Trp53inp1 ENSMUST00000132693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028211 Trp53inp1 ENSMUST00000132010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028211 Trp53inp1 ENSMUST00000029865 ENSMUSP00000029865 TRANSLATION protein_coding - CCDS17964.1 1 239.0 0.0 0.0 15.0 273.0 0.0 -4,-6 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000028327 Stra6l ENSMUST00000030011 ENSMUSP00000030011 TRANSLATION protein_coding - CCDS18141.1 1 621.0 0.0 2.635 2.5 744.3 11.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000028327 Stra6l ENSMUST00000128947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028327 Stra6l ENSMUST00000165478 - NO_TRANSLATION retained_intron ENSMUSG00000028327 Stra6l ENSMUST00000107783 ENSMUSP00000103412 TRANSLATION protein_coding - CCDS18141.1 5 621.0 0.0 2.635 2.5 744.3 11.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000028327 Stra6l ENSMUST00000107782 ENSMUSP00000103411 TRANSLATION protein_coding - CCDS80094.1 1 530.0 0.0 2.285 1.1 642.2 10.0 -4,-5 0.1722 1 5.269 MINOR ENSMUSG00000096530 Gm11758 ENSMUST00000107326 ENSMUSP00000102948 TRANSLATION protein_coding - - 5 232.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0218 - 3.0 MINOR ENSMUSG00000096530 Gm11758 ENSMUST00000107327 ENSMUSP00000102949 TRANSLATION protein_coding - CCDS51207.2 1 360.0 0.0 1.6 0.0 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000018983 E2f2 ENSMUST00000061721 ENSMUSP00000050047 TRANSLATION protein_coding - CCDS18801.1 1 443.0 0.0 2.8 5.9 205.0 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000018983 E2f2 ENSMUST00000149750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028246 Faxc ENSMUST00000155220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028246 Faxc ENSMUST00000123481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028246 Faxc ENSMUST00000029908 ENSMUSP00000029908 TRANSLATION protein_coding - CCDS51130.1 1 409.0 10.0 4.9 21.8 172.3 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000028246 Faxc ENSMUST00000123319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028246 Faxc ENSMUST00000124440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053510 Nrdc ENSMUST00000150177 - NO_TRANSLATION retained_intron ENSMUSG00000053510 Nrdc ENSMUST00000148444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053510 Nrdc ENSMUST00000150784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053510 Nrdc ENSMUST00000125645 ENSMUSP00000122808 TRANSLATION protein_coding stop - 1 395.0 1.0 6.76 0.0 243.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000053510 Nrdc ENSMUST00000106644 ENSMUSP00000102255 TRANSLATION protein_coding - CCDS84773.1 5 1229.0 4.0 13.605 1.8 559.8 0.0 -4,-1 1.0 26 13.0 PRINCIPAL:1 ENSMUSG00000053510 Nrdc ENSMUST00000143015 - NO_TRANSLATION retained_intron ENSMUSG00000053510 Nrdc ENSMUST00000102736 ENSMUSP00000099797 TRANSLATION protein_coding - - 1 1117.0 4.0 12.925 0.0 522.4 0.0 -4,-1 0.0559 26 10.066 MINOR ENSMUSG00000053510 Nrdc ENSMUST00000143604 - NO_TRANSLATION retained_intron ENSMUSG00000053510 Nrdc ENSMUST00000065977 ENSMUSP00000068328 TRANSLATION protein_coding - CCDS18460.1 1 1161.0 4.0 13.485 0.7 566.9 0.0 -4,-1 0.5888 26 11.76 MINOR ENSMUSG00000053510 Nrdc ENSMUST00000155228 - NO_TRANSLATION retained_intron ENSMUSG00000053510 Nrdc ENSMUST00000125063 - NO_TRANSLATION retained_intron ENSMUSG00000053510 Nrdc ENSMUST00000150796 - NO_TRANSLATION retained_intron ENSMUSG00000073764 Gm12888 ENSMUST00000097905 ENSMUSP00000095515 TRANSLATION protein_coding - CCDS38867.1 1 119.0 0.0 1.5 0.0 27.1 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073988 Ttpa ENSMUST00000117632 ENSMUSP00000113026 TRANSLATION protein_coding - - 5 262.0 21.0 4.75 0.0 111.8 0.0 -4,-5 0.0017 7 13.662 MINOR ENSMUSG00000073988 Ttpa ENSMUST00000125799 ENSMUSP00000117031 TRANSLATION protein_coding stop - 3 90.0 11.0 2.0 0.0 28.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000073988 Ttpa ENSMUST00000121491 ENSMUSP00000113966 TRANSLATION protein_coding - CCDS84707.1 1 209.0 21.0 5.25 0.1 109.4 0.0 -4,-6 0.0135 5 14.52 MINOR ENSMUSG00000073988 Ttpa ENSMUST00000098244 ENSMUSP00000095845 TRANSLATION protein_coding - CCDS17995.1 1 278.0 21.0 6.25 10.7 134.1 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000029072 Tas1r3 ENSMUST00000030949 ENSMUSP00000030949 TRANSLATION protein_coding - CCDS19046.1 1 858.0 0.0 2.92 0.8 401.8 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036749 Pramel5 ENSMUST00000144127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036749 Pramel5 ENSMUST00000133357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036749 Pramel5 ENSMUST00000035757 ENSMUSP00000044222 TRANSLATION protein_coding - CCDS51363.1 1 500.0 0.0 1.8 0.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000041193 Pla2g5 ENSMUST00000136393 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041193 Pla2g5 ENSMUST00000102512 ENSMUSP00000099570 TRANSLATION protein_coding - CCDS18834.1 1 137.0 3.0 3.0 9.1 117.9 0.0 3,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000041193 Pla2g5 ENSMUST00000030524 ENSMUSP00000030524 TRANSLATION protein_coding - CCDS18834.1 1 137.0 3.0 3.0 9.1 117.9 0.0 3,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000041193 Pla2g5 ENSMUST00000154844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041193 Pla2g5 ENSMUST00000102513 ENSMUSP00000099571 TRANSLATION protein_coding - CCDS18834.1 5 137.0 3.0 3.0 9.1 117.9 0.0 3,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000041193 Pla2g5 ENSMUST00000140100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041193 Pla2g5 ENSMUST00000102511 ENSMUSP00000099569 TRANSLATION protein_coding - CCDS18834.1 1 137.0 3.0 3.0 9.1 117.9 0.0 3,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000041193 Pla2g5 ENSMUST00000140117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041193 Pla2g5 ENSMUST00000127183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068240 Uba52rt ENSMUST00000089430 ENSMUSP00000086852 TRANSLATION protein_coding - - - 128.0 4.0 1.0 32.0 230.3 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000029028 Lrrc47 ENSMUST00000167947 ENSMUSP00000131382 TRANSLATION protein_coding start - 3 123.0 0.0 1.25 0.0 28.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029028 Lrrc47 ENSMUST00000030894 ENSMUSP00000030894 TRANSLATION protein_coding - CCDS19006.1 1 581.0 0.0 4.38 1.2 104.1 0.0 -4,-7 0.5557 19 7.95 ALTERNATIVE:2 ENSMUSG00000029028 Lrrc47 ENSMUST00000163672 ENSMUSP00000126367 TRANSLATION protein_coding start - 3 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029028 Lrrc47 ENSMUST00000142794 - NO_TRANSLATION retained_intron ENSMUSG00000029028 Lrrc47 ENSMUST00000169622 ENSMUSP00000133124 TRANSLATION protein_coding - - 1 603.0 0.0 4.53 1.8 104.1 0.0 -2,1 1.0 19 9.0 PRINCIPAL:2 ENSMUSG00000028358 Zfp618 ENSMUST00000151324 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028358 Zfp618 ENSMUST00000030043 ENSMUSP00000030043 TRANSLATION protein_coding - - 1 374.0 12.0 3.7 0.0 0.0 0.0 -4,-5 0.0177 1 6.492 MINOR ENSMUSG00000028358 Zfp618 ENSMUST00000064814 ENSMUSP00000069275 TRANSLATION protein_coding - CCDS51203.1 5 860.0 16.0 5.122 4.2 0.0 0.0 -4,-5 0.7552 2 13.422 ALTERNATIVE:2 ENSMUSG00000028358 Zfp618 ENSMUST00000107415 ENSMUSP00000103038 TRANSLATION protein_coding - - 5 953.0 16.0 5.0895 5.5 0.0 0.0 -4,-5 1.0 4 13.934 PRINCIPAL:3 ENSMUSG00000006219 Fblim1 ENSMUST00000131317 ENSMUSP00000116395 TRANSLATION protein_coding stop - 3 98.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000006219 Fblim1 ENSMUST00000130181 ENSMUSP00000115992 TRANSLATION protein_coding stop - 5 175.0 0.0 1.874 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000006219 Fblim1 ENSMUST00000137491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006219 Fblim1 ENSMUST00000123150 ENSMUSP00000121037 TRANSLATION protein_coding stop - 2 73.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000006219 Fblim1 ENSMUST00000006381 ENSMUSP00000006381 TRANSLATION protein_coding - CCDS18876.1 1 375.0 22.0 6.204 2.7 129.2 0.0 -4,-7 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000006219 Fblim1 ENSMUST00000105784 ENSMUSP00000101410 TRANSLATION protein_coding - CCDS18876.1 5 375.0 22.0 6.204 2.7 129.2 0.0 -4,-7 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000006219 Fblim1 ENSMUST00000133874 ENSMUSP00000116589 TRANSLATION protein_coding stop - 2 33.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000006219 Fblim1 ENSMUST00000153189 ENSMUSP00000123322 TRANSLATION protein_coding stop - 2 175.0 0.0 1.874 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000006219 Fblim1 ENSMUST00000127455 ENSMUSP00000120028 TRANSLATION protein_coding stop - 3 102.0 0.0 1.15 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000006219 Fblim1 ENSMUST00000141518 ENSMUSP00000123669 TRANSLATION protein_coding stop - 5 182.0 0.0 1.874 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000006219 Fblim1 ENSMUST00000136831 ENSMUSP00000116596 TRANSLATION protein_coding stop - 2 56.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000006219 Fblim1 ENSMUST00000147785 ENSMUSP00000114313 TRANSLATION protein_coding stop - 5 128.0 0.0 1.15 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000006219 Fblim1 ENSMUST00000105785 ENSMUSP00000101411 TRANSLATION protein_coding - CCDS18876.1 1 375.0 22.0 6.204 2.7 129.2 0.0 -4,-7 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000006219 Fblim1 ENSMUST00000147764 ENSMUSP00000120600 TRANSLATION protein_coding stop - 3 167.0 0.0 1.55 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000006219 Fblim1 ENSMUST00000129602 ENSMUSP00000118647 TRANSLATION protein_coding stop - 3 102.0 0.0 1.15 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028333 Anp32b ENSMUST00000102926 ENSMUSP00000099990 TRANSLATION protein_coding - CCDS18151.1 1 272.0 0.0 3.5 0.4 31.8 0.0 -4,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000028330 Ncbp1 ENSMUST00000133286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028330 Ncbp1 ENSMUST00000131187 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028330 Ncbp1 ENSMUST00000030014 ENSMUSP00000030014 TRANSLATION protein_coding - CCDS18145.1 1 790.0 0.0 19.13 22.0 391.0 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000028234 Rps20 ENSMUST00000138502 ENSMUSP00000120528 TRANSLATION protein_coding - CCDS17940.1 1 119.0 0.0 2.75 34.9 106.6 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028234 Rps20 ENSMUST00000103009 - NO_TRANSLATION retained_intron ENSMUSG00000028234 Rps20 ENSMUST00000130128 - NO_TRANSLATION retained_intron ENSMUSG00000073768 Or10ak16 ENSMUST00000094830 ENSMUSP00000092425 TRANSLATION protein_coding - CCDS18565.1 - 315.0 0.0 1.0 4.1 180.8 6.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073768 Or10ak16 ENSMUST00000105035 ENSMUSP00000100652 TRANSLATION protein_coding - CCDS18565.1 3 315.0 0.0 1.0 4.1 180.8 6.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073768 Or10ak16 ENSMUST00000216386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073768 Or10ak16 ENSMUST00000106361 ENSMUSP00000101968 TRANSLATION protein_coding - CCDS18565.1 5 315.0 0.0 1.0 4.1 180.8 6.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073768 Or10ak16 ENSMUST00000215186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028820 Sfpq ENSMUST00000247843 ENSMUSP00000159529 TRANSLATION protein_coding - - - 720.0 0.0 5.75 0.0 198.7 0.0 -4,-2 0.1761 22 8.0 ALTERNATIVE:2 ENSMUSG00000028820 Sfpq ENSMUST00000144630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028820 Sfpq ENSMUST00000140682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028820 Sfpq ENSMUST00000146285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028820 Sfpq ENSMUST00000030623 ENSMUSP00000030623 TRANSLATION protein_coding - CCDS18662.1 1 699.0 0.0 5.75 0.1 198.7 0.0 -4,-6 1.0 22 8.0 PRINCIPAL:2 ENSMUSG00000028820 Sfpq ENSMUST00000143168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028820 Sfpq ENSMUST00000125453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028707 Dmbx1 ENSMUST00000064806 ENSMUSP00000134457 TRANSLATION protein_coding - CCDS18500.1 1 376.0 0.0 1.5 10.3 101.4 0.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000028707 Dmbx1 ENSMUST00000084338 ENSMUSP00000081366 TRANSLATION protein_coding - - 1 381.0 0.0 1.5 8.1 101.4 0.0 -4,-7 0.7924 - 10.289 ALTERNATIVE:1 ENSMUSG00000028707 Dmbx1 ENSMUST00000124071 ENSMUSP00000120320 TRANSLATION protein_coding - CCDS18500.1 1 376.0 0.0 1.5 10.3 101.4 0.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000028971 Cort ENSMUST00000030815 ENSMUSP00000030815 TRANSLATION protein_coding - CCDS18953.1 1 109.0 0.0 0.0 1.1 39.0 0.0 2,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000028677 Rnf220 ENSMUST00000123222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028677 Rnf220 ENSMUST00000102690 ENSMUSP00000099751 TRANSLATION protein_coding - CCDS80149.1 1 245.0 8.0 0.0 1.1 217.9 0.0 -4,-5 0.0445 5 6.028 MINOR ENSMUSG00000028677 Rnf220 ENSMUST00000223371 - NO_TRANSLATION retained_intron ENSMUSG00000028677 Rnf220 ENSMUST00000151829 ENSMUSP00000152638 TRANSLATION protein_coding start - 3 188.0 0.0 0.0 0.0 151.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028677 Rnf220 ENSMUST00000138435 - NO_TRANSLATION retained_intron ENSMUSG00000028677 Rnf220 ENSMUST00000221157 - NO_TRANSLATION retained_intron ENSMUSG00000028677 Rnf220 ENSMUST00000128122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028677 Rnf220 ENSMUST00000150148 - NO_TRANSLATION retained_intron ENSMUSG00000028677 Rnf220 ENSMUST00000223182 - NO_TRANSLATION retained_intron ENSMUSG00000028677 Rnf220 ENSMUST00000133971 - NO_TRANSLATION retained_intron ENSMUSG00000028677 Rnf220 ENSMUST00000221654 ENSMUSP00000152367 TRANSLATION protein_coding - - 1 308.0 8.0 0.0 6.5 284.2 0.0 -4,-2 0.2383 5 10.362 MINOR ENSMUSG00000028677 Rnf220 ENSMUST00000030439 ENSMUSP00000030439 TRANSLATION protein_coding - CCDS18534.1 1 566.0 8.0 0.0 15.8 214.7 0.0 -4,-5 1.0 5 10.0 MINOR ENSMUSG00000028677 Rnf220 ENSMUST00000154974 - NO_TRANSLATION retained_intron ENSMUSG00000028677 Rnf220 ENSMUST00000094853 ENSMUSP00000092449 TRANSLATION protein_coding - CCDS80150.1 1 353.0 8.0 0.0 1.0 336.3 0.0 -4,-5 0.8863 5 12.0 PRINCIPAL:1 ENSMUSG00000028646 Rragc ENSMUST00000143635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028646 Rragc ENSMUST00000030399 ENSMUSP00000030399 TRANSLATION protein_coding - CCDS18622.1 1 398.0 19.0 6.3 10.6 247.1 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000028646 Rragc ENSMUST00000155454 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028646 Rragc ENSMUST00000133445 - NO_TRANSLATION retained_intron ENSMUSG00000028646 Rragc ENSMUST00000155757 ENSMUSP00000115232 TRANSLATION nonsense_mediated_decay - - 1 182.0 16.0 1.5 0.0 100.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028626 Col9a2 ENSMUST00000140119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028626 Col9a2 ENSMUST00000151987 - NO_TRANSLATION retained_intron ENSMUSG00000028626 Col9a2 ENSMUST00000030372 ENSMUSP00000030372 TRANSLATION protein_coding - CCDS18599.1 1 688.0 0.0 11.941 10.6 204.2 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000029656 C8b ENSMUST00000065072 ENSMUSP00000066940 TRANSLATION protein_coding - CCDS84762.1 1 523.0 11.0 9.35 0.0 197.5 0.0 1,-1 0.1264 15 15.918 MINOR ENSMUSG00000029656 C8b ENSMUST00000031663 ENSMUSP00000031663 TRANSLATION protein_coding - CCDS18414.1 1 589.0 11.0 10.35 0.8 198.9 0.0 1,-1 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000029656 C8b ENSMUST00000123892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047502 Mroh7 ENSMUST00000134160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047502 Mroh7 ENSMUST00000142954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047502 Mroh7 ENSMUST00000135000 - NO_TRANSLATION retained_intron ENSMUSG00000047502 Mroh7 ENSMUST00000106770 ENSMUSP00000102382 TRANSLATION protein_coding - CCDS51253.1 5 1279.0 0.0 0.0 0.4 0.0 0.0 -4,-5 1.0 - 0.0 PRINCIPAL:1 ENSMUSG00000047502 Mroh7 ENSMUST00000148281 ENSMUSP00000119211 TRANSLATION protein_coding stop - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0383 - -2.0 MINOR ENSMUSG00000047502 Mroh7 ENSMUST00000145044 ENSMUSP00000117581 TRANSLATION protein_coding stop - 5 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0203 - -2.0 MINOR ENSMUSG00000047502 Mroh7 ENSMUST00000145374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033253 Szt2 ENSMUST00000183402 ENSMUSP00000139348 TRANSLATION nonsense_mediated_decay start - 1 559.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0402 4 -2.0 MINOR ENSMUSG00000033253 Szt2 ENSMUST00000136737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033253 Szt2 ENSMUST00000138386 - NO_TRANSLATION retained_intron ENSMUSG00000033253 Szt2 ENSMUST00000075406 ENSMUSP00000074862 TRANSLATION protein_coding - CCDS51283.1 1 3431.0 0.0 2.0 6.7 0.0 0.0 -4,-5 1.0 32 8.0 PRINCIPAL:1 ENSMUSG00000033253 Szt2 ENSMUST00000130058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033253 Szt2 ENSMUST00000138632 - NO_TRANSLATION retained_intron ENSMUSG00000028553 Angptl3 ENSMUST00000125546 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028553 Angptl3 ENSMUST00000136091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028553 Angptl3 ENSMUST00000030280 ENSMUSP00000030280 TRANSLATION protein_coding - CCDS38817.1 1 455.0 0.0 3.82 1.2 171.3 0.0 2,-3 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000000085 Scmh1 ENSMUST00000144862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000085 Scmh1 ENSMUST00000000087 ENSMUSP00000000087 TRANSLATION protein_coding - CCDS18589.1 1 664.0 0.0 6.94 5.3 390.8 0.0 -3,-6 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000000085 Scmh1 ENSMUST00000064991 ENSMUSP00000069813 TRANSLATION protein_coding - CCDS51292.1 5 706.0 0.0 6.94 0.0 390.8 0.0 -3,-6 0.2097 6 12.0 MINOR ENSMUSG00000000085 Scmh1 ENSMUST00000136801 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000085 Scmh1 ENSMUST00000133169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000085 Scmh1 ENSMUST00000106298 ENSMUSP00000101905 TRANSLATION protein_coding - CCDS18589.1 1 664.0 0.0 6.94 5.3 390.8 0.0 -3,-6 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000000085 Scmh1 ENSMUST00000144555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000085 Scmh1 ENSMUST00000151345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000085 Scmh1 ENSMUST00000153099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000085 Scmh1 ENSMUST00000106301 ENSMUSP00000101908 TRANSLATION protein_coding - CCDS51292.1 1 706.0 0.0 6.94 0.0 390.8 0.0 -3,-6 0.2097 6 12.0 MINOR ENSMUSG00000000085 Scmh1 ENSMUST00000133290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000085 Scmh1 ENSMUST00000132116 ENSMUSP00000115343 TRANSLATION protein_coding stop - 5 28.0 0.0 0.24 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000000085 Scmh1 ENSMUST00000122860 ENSMUSP00000120950 TRANSLATION protein_coding start/stop - 3 177.0 0.0 0.6 0.0 67.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000000085 Scmh1 ENSMUST00000134375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028589 Cfap107 ENSMUST00000030323 ENSMUSP00000030323 TRANSLATION protein_coding - CCDS51365.1 1 196.0 0.0 3.0 7.2 0.0 0.0 -4,-6 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000028261 Ndufaf4 ENSMUST00000146721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028261 Ndufaf4 ENSMUST00000029925 ENSMUSP00000029925 TRANSLATION protein_coding - CCDS18007.1 1 173.0 0.0 0.0 13.3 213.6 0.0 -4,-2 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000028261 Ndufaf4 ENSMUST00000151249 ENSMUSP00000117141 TRANSLATION protein_coding start - 2 127.0 0.0 0.0 0.0 104.5 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000071005 Ccl19 ENSMUST00000102957 ENSMUSP00000100022 TRANSLATION protein_coding - CCDS18080.1 1 108.0 0.0 2.3 0.1 69.8 0.0 3,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000071005 Ccl19 ENSMUST00000134240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071005 Ccl19 ENSMUST00000140546 ENSMUSP00000144891 TRANSLATION protein_coding - - 5 116.0 0.0 2.3 0.0 69.8 0.0 3,-2 0.1233 - 8.0 ALTERNATIVE:2 ENSMUSG00000046262 Pramel29 ENSMUST00000105754 ENSMUSP00000101380 TRANSLATION protein_coding - - 3 175.0 0.0 0.92 0.0 0.0 0.0 -4,-5 0.0089 - 1.956 MINOR ENSMUSG00000046262 Pramel29 ENSMUST00000105757 ENSMUSP00000101383 TRANSLATION protein_coding - CCDS51362.1 1 498.0 0.0 2.82 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046262 Pramel29 ENSMUST00000132946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047281 Sfn ENSMUST00000057311 ENSMUSP00000050374 TRANSLATION protein_coding - CCDS18754.1 - 248.0 0.0 1.0 9.5 341.0 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000029047 Pex10 ENSMUST00000133116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029047 Pex10 ENSMUST00000134341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029047 Pex10 ENSMUST00000123395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029047 Pex10 ENSMUST00000125432 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029047 Pex10 ENSMUST00000103180 ENSMUSP00000099469 TRANSLATION protein_coding - CCDS19021.1 1 324.0 8.0 1.2 9.0 176.2 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000044730 Airim ENSMUST00000232733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044730 Airim ENSMUST00000233207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044730 Airim ENSMUST00000233530 - NO_TRANSLATION retained_intron ENSMUSG00000044730 Airim ENSMUST00000233434 - NO_TRANSLATION retained_intron ENSMUSG00000044730 Airim ENSMUST00000233289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044730 Airim ENSMUST00000094769 ENSMUSP00000154851 TRANSLATION protein_coding - - 1 217.0 0.0 3.75 0.1 189.3 0.0 -4,-5 0.7521 2 12.0 PRINCIPAL:1 ENSMUSG00000044730 Airim ENSMUST00000233875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041556 Fbxo2 ENSMUST00000047951 ENSMUSP00000037377 TRANSLATION protein_coding - CCDS18935.1 1 297.0 5.0 4.8 7.1 272.2 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000041216 Clvs1 ENSMUST00000142369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041216 Clvs1 ENSMUST00000141085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041216 Clvs1 ENSMUST00000135864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041216 Clvs1 ENSMUST00000108348 ENSMUSP00000103985 TRANSLATION protein_coding - CCDS17957.1 1 354.0 0.0 4.0 13.5 146.2 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000041216 Clvs1 ENSMUST00000141734 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041216 Clvs1 ENSMUST00000128117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041216 Clvs1 ENSMUST00000147285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041216 Clvs1 ENSMUST00000038841 ENSMUSP00000035649 TRANSLATION protein_coding - CCDS17957.1 1 354.0 0.0 4.0 13.5 146.2 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000037553 Zdhhc18 ENSMUST00000135999 - NO_TRANSLATION retained_intron ENSMUSG00000037553 Zdhhc18 ENSMUST00000138639 - NO_TRANSLATION retained_intron ENSMUSG00000037553 Zdhhc18 ENSMUST00000142382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037553 Zdhhc18 ENSMUST00000146464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037553 Zdhhc18 ENSMUST00000084238 ENSMUSP00000081260 TRANSLATION protein_coding - CCDS38906.1 2 380.0 5.0 5.2 4.6 127.4 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000028838 Extl1 ENSMUST00000030643 ENSMUSP00000030643 TRANSLATION protein_coding - CCDS18770.1 1 669.0 0.0 1.989 5.2 403.7 0.0 2,-3 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000028838 Extl1 ENSMUST00000132387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028838 Extl1 ENSMUST00000142730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033379 Atp6v0b ENSMUST00000152356 - NO_TRANSLATION retained_intron ENSMUSG00000033379 Atp6v0b ENSMUST00000147845 ENSMUSP00000137945 TRANSLATION protein_coding stop - 2 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000033379 Atp6v0b ENSMUST00000133530 - NO_TRANSLATION retained_intron ENSMUSG00000033379 Atp6v0b ENSMUST00000150204 ENSMUSP00000119988 TRANSLATION protein_coding - - 5 158.0 0.0 4.58 3.8 109.7 10.0 2,-2 0.1636 - 9.21 MINOR ENSMUSG00000033379 Atp6v0b ENSMUST00000136596 ENSMUSP00000118538 TRANSLATION protein_coding stop - 3 18.0 0.0 0.5 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000033379 Atp6v0b ENSMUST00000149868 ENSMUSP00000137788 TRANSLATION protein_coding stop - 3 107.0 0.0 3.25 0.0 54.5 7.0 2,-2 0.0039 - -2.0 MINOR ENSMUSG00000033379 Atp6v0b ENSMUST00000036380 ENSMUSP00000047682 TRANSLATION protein_coding - CCDS18540.1 1 205.0 0.0 6.16 31.2 109.7 11.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000033379 Atp6v0b ENSMUST00000124974 - NO_TRANSLATION retained_intron ENSMUSG00000033379 Atp6v0b ENSMUST00000132073 ENSMUSP00000137654 TRANSLATION protein_coding stop - 5 84.0 0.0 2.5 0.0 54.5 6.0 2,-2 0.003 - -2.0 MINOR ENSMUSG00000028673 Fuca1 ENSMUST00000153592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028673 Fuca1 ENSMUST00000146290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028673 Fuca1 ENSMUST00000142033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028673 Fuca1 ENSMUST00000030434 ENSMUSP00000030434 TRANSLATION protein_coding - CCDS18794.1 1 452.0 7.0 8.0 3.0 491.6 0.0 2,-3 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000028673 Fuca1 ENSMUST00000142111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094065 Ccl21d ENSMUST00000098128 ENSMUSP00000095732 TRANSLATION protein_coding - CCDS57267.1 1 133.0 0.0 2.3 6.9 83.3 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000070902 Zfp352 ENSMUST00000107129 ENSMUSP00000102746 TRANSLATION protein_coding - CCDS18353.2 1 551.0 12.0 0.0 0.0 0.0 0.0 -4,-5 0.8473 - 6.0 PRINCIPAL:1 ENSMUSG00000070902 Zfp352 ENSMUST00000080541 ENSMUSP00000079383 TRANSLATION protein_coding - CCDS18353.2 - 551.0 12.0 0.0 0.0 0.0 0.0 -4,-5 0.8473 - 6.0 PRINCIPAL:1 ENSMUSG00000028572 Hook1 ENSMUST00000124202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028572 Hook1 ENSMUST00000146947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028572 Hook1 ENSMUST00000107083 ENSMUSP00000102698 TRANSLATION protein_coding - - 1 221.0 0.0 4.65 0.0 325.8 0.0 -4,-7 0.0245 2 6.0 MINOR ENSMUSG00000028572 Hook1 ENSMUST00000125584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028572 Hook1 ENSMUST00000156910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028572 Hook1 ENSMUST00000148291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028572 Hook1 ENSMUST00000030306 ENSMUSP00000030306 TRANSLATION protein_coding - CCDS18367.1 1 728.0 0.0 4.65 4.4 1030.5 0.0 -4,-7 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000028572 Hook1 ENSMUST00000125627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028572 Hook1 ENSMUST00000143326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028572 Hook1 ENSMUST00000140128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028572 Hook1 ENSMUST00000141448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050812 Ecpas ENSMUST00000107557 ENSMUSP00000103182 TRANSLATION protein_coding - - 1 942.0 0.0 0.0 0.0 522.7 0.0 -4,-5 0.0852 19 6.0 MINOR ENSMUSG00000050812 Ecpas ENSMUST00000131611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050812 Ecpas ENSMUST00000149301 ENSMUSP00000117585 TRANSLATION protein_coding stop - 5 1490.0 0.0 0.0 0.0 522.7 0.0 -4,-5 0.1891 40 -2.0 MINOR ENSMUSG00000050812 Ecpas ENSMUST00000055822 ENSMUSP00000061113 TRANSLATION protein_coding - - 1 361.0 0.0 0.0 0.0 350.6 0.0 -4,-5 0.0 7 0.0 MINOR ENSMUSG00000050812 Ecpas ENSMUST00000135601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050812 Ecpas ENSMUST00000134848 ENSMUSP00000114715 TRANSLATION protein_coding start/stop - 5 246.0 0.0 0.0 0.0 243.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000050812 Ecpas ENSMUST00000151869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050812 Ecpas ENSMUST00000149513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050812 Ecpas ENSMUST00000144512 ENSMUSP00000118103 TRANSLATION protein_coding stop - 1 538.0 0.0 0.0 0.0 522.7 0.0 -4,-5 0.0629 11 -2.0 MINOR ENSMUSG00000050812 Ecpas ENSMUST00000102889 ENSMUSP00000099953 TRANSLATION protein_coding - CCDS18214.1 1 1840.0 0.0 0.0 8.7 522.7 0.0 -4,-5 1.0 52 9.0 PRINCIPAL:1 ENSMUSG00000050812 Ecpas ENSMUST00000142102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070985 Acnat1 ENSMUST00000095086 ENSMUSP00000092702 TRANSLATION protein_coding - CCDS51174.1 1 416.0 3.0 4.5 0.4 384.8 0.0 -4,-6 1.0 3 11.0 PRINCIPAL:2 ENSMUSG00000070985 Acnat1 ENSMUST00000135976 ENSMUSP00000121168 TRANSLATION protein_coding stop - 5 48.0 0.0 1.0 0.0 33.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000070985 Acnat1 ENSMUST00000107697 ENSMUSP00000103325 TRANSLATION protein_coding - - 5 398.0 3.0 4.0 0.0 384.8 0.0 -4,-6 0.0524 3 9.998 ALTERNATIVE:2 ENSMUSG00000070985 Acnat1 ENSMUST00000150392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028709 Mob3c ENSMUST00000030477 ENSMUSP00000030477 TRANSLATION protein_coding - CCDS18497.1 1 216.0 4.0 3.13 35.7 252.0 0.0 -4,-2 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000028709 Mob3c ENSMUST00000148409 ENSMUSP00000123611 TRANSLATION protein_coding stop - 3 90.0 2.0 0.8 0.0 69.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000028709 Mob3c ENSMUST00000144839 - NO_TRANSLATION retained_intron ENSMUSG00000055210 Foxd2 ENSMUST00000068654 ENSMUSP00000066868 TRANSLATION protein_coding - CCDS18482.1 - 492.0 0.0 0.4 0.1 128.4 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000028708 Mknk1 ENSMUST00000153766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028708 Mknk1 ENSMUST00000154957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028708 Mknk1 ENSMUST00000144427 ENSMUSP00000117261 TRANSLATION protein_coding stop - 5 101.0 9.0 2.7675 0.0 35.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028708 Mknk1 ENSMUST00000151203 ENSMUSP00000114941 TRANSLATION protein_coding stop - 3 114.0 9.0 3.2675 0.0 51.1 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000028708 Mknk1 ENSMUST00000135209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028708 Mknk1 ENSMUST00000140315 ENSMUSP00000116410 TRANSLATION protein_coding stop - 2 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028708 Mknk1 ENSMUST00000155412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028708 Mknk1 ENSMUST00000144235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028708 Mknk1 ENSMUST00000150201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028708 Mknk1 ENSMUST00000152888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028708 Mknk1 ENSMUST00000130819 ENSMUSP00000118071 TRANSLATION protein_coding stop - 3 141.0 14.0 4.0175 0.0 67.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028708 Mknk1 ENSMUST00000106513 ENSMUSP00000102123 TRANSLATION protein_coding - CCDS18498.1 1 415.0 22.0 7.1175 6.5 227.7 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000028708 Mknk1 ENSMUST00000140585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028708 Mknk1 ENSMUST00000019677 ENSMUSP00000019677 TRANSLATION protein_coding - CCDS18498.1 1 415.0 22.0 7.1175 6.5 227.7 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000078639 Gm12695 ENSMUST00000107071 ENSMUSP00000102686 TRANSLATION protein_coding - CCDS38815.1 5 545.0 0.0 0.0 3.6 0.0 0.0 -4,-7 0.9898 5 1.0 PRINCIPAL:1 ENSMUSG00000078683 Mup1 ENSMUST00000103012 ENSMUSP00000100077 TRANSLATION protein_coding - CCDS18231.1 1 180.0 0.0 4.96 0.0 109.6 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000078683 Mup1 ENSMUST00000107499 ENSMUSP00000103123 TRANSLATION protein_coding - CCDS18231.1 2 180.0 0.0 4.96 0.0 109.6 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000078683 Mup1 ENSMUST00000084548 ENSMUSP00000081596 TRANSLATION protein_coding - CCDS51188.1 3 235.0 0.0 4.93 0.0 109.6 0.0 4,-1 0.365 - 7.94 ALTERNATIVE:2 ENSMUSG00000078683 Mup1 ENSMUST00000135953 ENSMUSP00000118299 TRANSLATION protein_coding start - 2 30.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028622 Mrpl37 ENSMUST00000125157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028622 Mrpl37 ENSMUST00000138788 - NO_TRANSLATION retained_intron ENSMUSG00000028622 Mrpl37 ENSMUST00000141150 - NO_TRANSLATION retained_intron ENSMUSG00000028622 Mrpl37 ENSMUST00000030365 ENSMUSP00000030365 TRANSLATION protein_coding - CCDS18429.1 1 423.0 0.0 6.75 8.9 34.2 0.0 -4,-2 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000028622 Mrpl37 ENSMUST00000125397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070691 Runx3 ENSMUST00000137027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070691 Runx3 ENSMUST00000056977 ENSMUSP00000050353 TRANSLATION protein_coding - CCDS18782.1 1 423.0 0.0 2.8 2.3 373.1 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:2 ENSMUSG00000070691 Runx3 ENSMUST00000140642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070691 Runx3 ENSMUST00000127109 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070691 Runx3 ENSMUST00000119564 ENSMUSP00000113159 TRANSLATION protein_coding - - 1 409.0 0.0 2.8 1.1 373.1 0.0 -4,-7 0.335 3 8.077 ALTERNATIVE:2 ENSMUSG00000070691 Runx3 ENSMUST00000156478 - NO_TRANSLATION retained_intron ENSMUSG00000028207 Asph ENSMUST00000084912 ENSMUSP00000081975 TRANSLATION protein_coding stop - 2 163.0 3.0 2.0 0.0 198.0 3.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000098275 ENSMUSP00000095876 TRANSLATION protein_coding - - 5 197.0 3.0 1.5 0.0 173.3 3.0 -4,-7 0.0 3 3.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000108339 ENSMUSP00000103976 TRANSLATION protein_coding - CCDS71341.1 1 658.0 3.0 12.0 0.0 488.5 0.0 -4,-5 0.197 22 10.176 MINOR ENSMUSG00000028207 Asph ENSMUST00000124408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028207 Asph ENSMUST00000152526 ENSMUSP00000116874 TRANSLATION protein_coding stop - 1 149.0 3.0 1.5 0.0 225.1 3.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000103004 ENSMUSP00000100069 TRANSLATION protein_coding - CCDS17959.1 1 207.0 3.0 1.5 5.0 158.2 3.0 -4,-6 0.5837 2 5.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000108337 ENSMUSP00000103974 TRANSLATION protein_coding - CCDS51115.1 1 294.0 3.0 1.5 0.0 313.6 3.0 -4,-7 0.0237 2 3.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000078139 ENSMUSP00000077273 TRANSLATION protein_coding - CCDS38690.1 1 741.0 3.0 12.0 0.4 568.9 3.0 -4,-7 1.0 23 15.0 PRINCIPAL:1 ENSMUSG00000028207 Asph ENSMUST00000152058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028207 Asph ENSMUST00000084915 ENSMUSP00000081978 TRANSLATION protein_coding - CCDS51116.1 5 310.0 3.0 1.5 0.0 340.8 3.0 -4,-7 0.0254 2 3.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000137375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028207 Asph ENSMUST00000108334 ENSMUSP00000103971 TRANSLATION protein_coding - CCDS51112.1 5 272.0 3.0 1.5 0.0 340.8 3.0 -4,-6 0.0226 1 3.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000130617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028207 Asph ENSMUST00000038564 ENSMUSP00000049018 TRANSLATION protein_coding - CCDS51117.1 1 245.0 3.0 1.5 0.1 188.1 3.0 -4,-7 0.0326 3 3.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000108333 ENSMUSP00000103970 TRANSLATION protein_coding - CCDS51113.1 5 261.0 3.0 1.5 0.0 283.6 3.0 -4,-5 0.0202 2 3.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000108335 ENSMUSP00000103972 TRANSLATION protein_coding - CCDS51111.1 5 215.0 3.0 1.5 0.0 158.6 3.0 -4,-6 0.0245 1 3.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000131605 ENSMUSP00000118518 TRANSLATION protein_coding stop - 3 73.0 3.0 2.0 0.0 118.9 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000028207 Asph ENSMUST00000108340 ENSMUSP00000103977 TRANSLATION protein_coding - CCDS51114.1 1 725.0 3.0 12.0 0.0 541.7 3.0 -4,-7 0.3588 23 13.368 MINOR ENSMUSG00000028207 Asph ENSMUST00000151232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028207 Asph ENSMUST00000146441 ENSMUSP00000116899 TRANSLATION protein_coding - CCDS51118.1 1 212.0 3.0 2.0 2.4 166.8 3.0 -4,-7 0.3404 3 3.7 MINOR ENSMUSG00000084845 Tmem240 ENSMUST00000176526 - NO_TRANSLATION retained_intron ENSMUSG00000084845 Tmem240 ENSMUST00000127188 ENSMUSP00000127341 TRANSLATION protein_coding - CCDS51403.1 2 173.0 0.0 0.6 23.7 356.3 0.0 -1,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000028988 Ctnnbip1 ENSMUST00000105692 ENSMUSP00000101317 TRANSLATION protein_coding - CCDS38975.1 1 81.0 0.0 2.5 35.8 82.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000028988 Ctnnbip1 ENSMUST00000030839 ENSMUSP00000030839 TRANSLATION protein_coding - CCDS38975.1 1 81.0 0.0 2.5 35.8 82.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000037443 Cep85 ENSMUST00000138144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037443 Cep85 ENSMUST00000141992 - NO_TRANSLATION retained_intron ENSMUSG00000037443 Cep85 ENSMUST00000126014 - NO_TRANSLATION retained_intron ENSMUSG00000037443 Cep85 ENSMUST00000040271 ENSMUSP00000039889 TRANSLATION protein_coding - CCDS18765.1 1 761.0 0.0 0.0 4.7 0.0 0.0 -4,-5 1.0 5 2.0 PRINCIPAL:4 ENSMUSG00000037443 Cep85 ENSMUST00000141384 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037443 Cep85 ENSMUST00000132120 - NO_TRANSLATION retained_intron ENSMUSG00000037443 Cep85 ENSMUST00000121566 ENSMUSP00000113351 TRANSLATION protein_coding - - 1 759.0 0.0 0.0 4.7 0.0 0.0 -4,-5 0.8573 5 2.0 ALTERNATIVE:1 ENSMUSG00000037443 Cep85 ENSMUST00000137388 ENSMUSP00000125599 TRANSLATION nonsense_mediated_decay - - 3 77.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0125 1 -2.0 MINOR ENSMUSG00000037443 Cep85 ENSMUST00000145531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028362 Tnfsf8 ENSMUST00000030047 ENSMUSP00000030047 TRANSLATION protein_coding - CCDS18264.1 1 239.0 0.0 0.0 11.0 83.3 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000028664 Ephb2 ENSMUST00000144573 - NO_TRANSLATION retained_intron ENSMUSG00000028664 Ephb2 ENSMUST00000105845 ENSMUSP00000101471 TRANSLATION protein_coding - CCDS18809.1 1 986.0 18.0 11.794 5.5 875.5 2.0 2,-2 1.0 18 15.202 PRINCIPAL:4 ENSMUSG00000028664 Ephb2 ENSMUST00000059287 ENSMUSP00000058135 TRANSLATION protein_coding - CCDS71498.1 2 987.0 18.0 12.194 0.4 880.1 2.0 2,-2 0.7484 18 14.0 MINOR ENSMUSG00000028664 Ephb2 ENSMUST00000151502 - NO_TRANSLATION retained_intron ENSMUSG00000028664 Ephb2 ENSMUST00000105846 ENSMUSP00000101472 TRANSLATION protein_coding - - 5 987.0 18.0 11.794 5.5 878.5 2.0 2,-2 0.8578 18 15.202 ALTERNATIVE:1 ENSMUSG00000028664 Ephb2 ENSMUST00000156558 ENSMUSP00000116350 TRANSLATION protein_coding start/stop - 3 276.0 0.0 3.0 0.0 176.6 2.0 -4,-5 0.0017 6 -2.0 MINOR ENSMUSG00000041143 Tmco4 ENSMUST00000123636 ENSMUSP00000122817 TRANSLATION protein_coding stop - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041143 Tmco4 ENSMUST00000050949 ENSMUSP00000059320 TRANSLATION protein_coding - CCDS18837.1 1 631.0 0.0 0.0 4.3 482.5 2.0 -4,-6 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000041143 Tmco4 ENSMUST00000043042 ENSMUSP00000041388 TRANSLATION protein_coding - CCDS18837.1 1 631.0 0.0 0.0 4.3 482.5 2.0 -4,-6 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000041143 Tmco4 ENSMUST00000124835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028729 Ebna1bp2 ENSMUST00000126458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028729 Ebna1bp2 ENSMUST00000147373 ENSMUSP00000114372 TRANSLATION protein_coding stop - 3 186.0 0.0 2.72 0.0 193.1 0.0 -4,-7 0.0164 4 -2.0 MINOR ENSMUSG00000028729 Ebna1bp2 ENSMUST00000149837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028729 Ebna1bp2 ENSMUST00000030501 ENSMUSP00000030501 TRANSLATION protein_coding - CCDS18555.1 1 306.0 0.0 2.445 10.5 289.3 0.0 -4,-5 1.0 6 14.394 PRINCIPAL:1 ENSMUSG00000028729 Ebna1bp2 ENSMUST00000130219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028310 Ppp3r2 ENSMUST00000029991 ENSMUSP00000029991 TRANSLATION protein_coding - CCDS18179.1 1 179.0 25.0 1.264 0.4 84.8 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000033948 Zswim5 ENSMUST00000044823 ENSMUSP00000049474 TRANSLATION protein_coding - CCDS18520.1 1 1188.0 0.0 0.0 3.7 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000043633 Fam221b ENSMUST00000056474 ENSMUSP00000057398 TRANSLATION protein_coding - CCDS18107.1 1 487.0 0.0 3.565 0.0 66.2 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000043633 Fam221b ENSMUST00000134487 - NO_TRANSLATION retained_intron ENSMUSG00000043383 Or13p4 ENSMUST00000060562 ENSMUSP00000053925 TRANSLATION protein_coding - CCDS18557.1 - 315.0 0.0 1.0 12.2 187.0 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043383 Or13p4 ENSMUST00000216226 ENSMUSP00000149966 TRANSLATION protein_coding - CCDS18557.1 2 315.0 0.0 1.0 12.2 187.0 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028753 Vwa5b1 ENSMUST00000105812 ENSMUSP00000101438 TRANSLATION nonsense_mediated_decay - - 5 112.0 0.0 0.6 0.0 105.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028753 Vwa5b1 ENSMUST00000030533 ENSMUSP00000030533 TRANSLATION protein_coding - CCDS51336.1 1 1215.0 5.0 2.42 0.1 211.1 0.0 -3,-5 1.0 14 17.0 PRINCIPAL:1 ENSMUSG00000028753 Vwa5b1 ENSMUST00000154312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028753 Vwa5b1 ENSMUST00000133319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028753 Vwa5b1 ENSMUST00000137206 ENSMUSP00000122484 TRANSLATION protein_coding start/stop - 3 171.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028909 Ptpru ENSMUST00000139641 - NO_TRANSLATION retained_intron ENSMUSG00000028909 Ptpru ENSMUST00000097860 ENSMUSP00000095472 TRANSLATION protein_coding - - 1 907.0 0.0 8.32 0.0 170.5 2.0 -4,-7 0.0061 11 0.6 MINOR ENSMUSG00000028909 Ptpru ENSMUST00000144136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028909 Ptpru ENSMUST00000030741 ENSMUSP00000030741 TRANSLATION protein_coding - CCDS38896.1 5 1446.0 16.0 18.77 9.3 638.8 2.0 2,-2 1.0 13 17.0 PRINCIPAL:4 ENSMUSG00000028909 Ptpru ENSMUST00000127633 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028909 Ptpru ENSMUST00000105987 ENSMUSP00000101607 TRANSLATION protein_coding - CCDS18714.1 1 1436.0 16.0 18.77 7.5 638.8 2.0 2,-2 0.919 13 16.349 ALTERNATIVE:1 ENSMUSG00000028909 Ptpru ENSMUST00000154224 - NO_TRANSLATION retained_intron ENSMUSG00000028909 Ptpru ENSMUST00000123878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036995 Asap3 ENSMUST00000047526 ENSMUSP00000041899 TRANSLATION protein_coding - CCDS18802.1 1 904.0 6.0 10.59 4.9 257.8 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000042558 Adprs ENSMUST00000102617 ENSMUSP00000099677 TRANSLATION protein_coding - CCDS18650.1 1 370.0 6.0 6.0 0.0 221.3 0.0 -2,1 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000042558 Adprs ENSMUST00000128188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042558 Adprs ENSMUST00000133068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042558 Adprs ENSMUST00000151191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035126 Dnai4 ENSMUST00000116316 ENSMUSP00000112018 TRANSLATION nonsense_mediated_decay - - 2 611.0 0.0 1.9 0.0 0.0 0.0 -4,-2 0.0039 3 -2.0 MINOR ENSMUSG00000035126 Dnai4 ENSMUST00000138960 - NO_TRANSLATION retained_intron ENSMUSG00000035126 Dnai4 ENSMUST00000148673 ENSMUSP00000119752 TRANSLATION protein_coding start - 5 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000035126 Dnai4 ENSMUST00000152647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035126 Dnai4 ENSMUST00000136355 - NO_TRANSLATION retained_intron ENSMUSG00000035126 Dnai4 ENSMUST00000106868 ENSMUSP00000102481 TRANSLATION protein_coding - CCDS38824.3 5 807.0 0.0 4.43 0.4 14.6 0.0 -4,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000070661 Rnf186 ENSMUST00000116094 ENSMUSP00000111780 TRANSLATION protein_coding - - - 226.0 8.0 0.5 4.6 28.7 2.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000070661 Rnf186 ENSMUST00000239443 ENSMUSP00000159341 TRANSLATION protein_coding - CCDS51338.1 - 280.0 8.0 0.5 0.4 28.7 2.0 -4,-5 0.3298 1 18.0 MINOR ENSMUSG00000055761 Nkain3 ENSMUST00000119374 ENSMUSP00000113113 TRANSLATION protein_coding - CCDS71349.1 1 181.0 0.0 1.95 25.8 283.5 5.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000055761 Nkain3 ENSMUST00000102998 ENSMUSP00000100063 TRANSLATION protein_coding - CCDS17997.1 1 166.0 0.0 1.95 0.0 258.7 4.0 1,-3 0.1483 - 10.512 MINOR ENSMUSG00000028693 Nasp ENSMUST00000154811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028693 Nasp ENSMUST00000148436 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028693 Nasp ENSMUST00000081182 ENSMUSP00000079946 TRANSLATION protein_coding - CCDS71451.1 1 421.0 0.0 0.0 0.0 64.0 0.0 -1,-3 0.1525 12 6.0 MINOR ENSMUSG00000028693 Nasp ENSMUST00000030456 ENSMUSP00000030456 TRANSLATION protein_coding - CCDS18513.1 1 773.0 0.0 0.0 0.1 64.0 0.0 -1,-3 0.226 22 6.0 MINOR ENSMUSG00000028693 Nasp ENSMUST00000134038 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028693 Nasp ENSMUST00000030457 ENSMUSP00000030457 TRANSLATION protein_coding - CCDS38852.1 1 448.0 0.0 0.0 8.3 64.0 0.0 -1,-3 1.0 15 9.0 PRINCIPAL:1 ENSMUSG00000028693 Nasp ENSMUST00000130363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028693 Nasp ENSMUST00000155398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028538 St3gal3 ENSMUST00000126336 ENSMUSP00000121051 TRANSLATION protein_coding stop - 3 159.0 0.0 3.85 0.0 130.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000028538 St3gal3 ENSMUST00000097912 ENSMUSP00000095525 TRANSLATION protein_coding - CCDS71458.1 1 358.0 0.0 8.43 18.8 234.6 0.0 -1,-5 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000028538 St3gal3 ENSMUST00000030263 ENSMUSP00000030263 TRANSLATION protein_coding - CCDS18544.1 1 374.0 0.0 8.43 17.5 234.6 0.0 1,-3 0.9602 2 11.708 ALTERNATIVE:1 ENSMUSG00000028538 St3gal3 ENSMUST00000106410 ENSMUSP00000102018 TRANSLATION protein_coding - CCDS18544.1 1 374.0 0.0 8.43 17.5 234.6 0.0 1,-3 0.9602 2 11.708 ALTERNATIVE:1 ENSMUSG00000028538 St3gal3 ENSMUST00000138274 ENSMUSP00000114444 TRANSLATION protein_coding start/stop - 5 270.0 0.0 6.68 0.0 128.5 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000039158 Akna ENSMUST00000140586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039158 Akna ENSMUST00000035724 ENSMUSP00000041614 TRANSLATION protein_coding - CCDS38777.1 5 1404.0 0.0 0.0 0.1 116.3 0.0 -4,-2 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000099545 Gm13276 ENSMUST00000179372 ENSMUSP00000140435 TRANSLATION protein_coding - CCDS51225.1 - 182.0 0.0 0.4 0.0 95.8 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028573 Fggy ENSMUST00000147766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028573 Fggy ENSMUST00000143742 ENSMUSP00000117386 TRANSLATION nonsense_mediated_decay start - 5 64.0 1.0 1.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000028573 Fggy ENSMUST00000130541 ENSMUSP00000115688 TRANSLATION protein_coding start - 5 175.0 6.0 3.83 0.0 77.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028573 Fggy ENSMUST00000079223 ENSMUSP00000078216 TRANSLATION protein_coding - CCDS51233.1 5 552.0 18.0 15.24 16.3 259.8 0.0 -4,-6 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000028573 Fggy ENSMUST00000107091 ENSMUSP00000102706 TRANSLATION protein_coding - - 5 464.0 16.0 12.66 1.7 201.0 0.0 -4,-6 0.0278 12 8.164 MINOR ENSMUSG00000028573 Fggy ENSMUST00000131654 ENSMUSP00000116264 TRANSLATION nonsense_mediated_decay - - 5 103.0 2.0 1.75 0.0 36.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028573 Fggy ENSMUST00000176162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028573 Fggy ENSMUST00000043335 ENSMUSP00000043460 TRANSLATION protein_coding - CCDS18365.1 1 387.0 13.0 9.91 0.0 143.6 0.0 -4,-6 0.0032 14 2.664 MINOR ENSMUSG00000028573 Fggy ENSMUST00000177394 ENSMUSP00000134881 TRANSLATION protein_coding stop - 5 77.0 2.0 2.08 0.0 40.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028573 Fggy ENSMUST00000141248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028573 Fggy ENSMUST00000125742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028573 Fggy ENSMUST00000134012 ENSMUSP00000115859 TRANSLATION protein_coding stop - 5 110.0 2.0 2.75 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000028573 Fggy ENSMUST00000153119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028573 Fggy ENSMUST00000176840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028573 Fggy ENSMUST00000156223 ENSMUSP00000118147 TRANSLATION protein_coding start - 5 133.0 5.0 2.75 0.0 82.9 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000028573 Fggy ENSMUST00000147783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028573 Fggy ENSMUST00000150830 ENSMUSP00000115546 TRANSLATION protein_coding stop - 5 79.0 2.0 2.08 0.0 40.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028573 Fggy ENSMUST00000142384 ENSMUSP00000123407 TRANSLATION nonsense_mediated_decay start - 1 32.0 0.0 0.5 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000048232 Fbxo10 ENSMUST00000155583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048232 Fbxo10 ENSMUST00000140008 ENSMUSP00000119862 TRANSLATION protein_coding start - 5 731.0 0.0 1.771 0.0 114.5 0.0 -4,-7 0.0383 11 -2.0 MINOR ENSMUSG00000048232 Fbxo10 ENSMUST00000052236 ENSMUSP00000058233 TRANSLATION protein_coding - CCDS51171.1 1 950.0 0.0 1.771 10.3 149.1 0.0 -3,-7 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000028744 Slc66a1 ENSMUST00000139840 ENSMUSP00000121362 TRANSLATION nonsense_mediated_decay - CCDS18843.2 1 293.0 0.0 0.0 9.4 101.9 5.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000028744 Slc66a1 ENSMUST00000053862 ENSMUSP00000059772 TRANSLATION protein_coding - CCDS18843.2 1 293.0 0.0 0.0 9.4 101.9 5.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000028744 Slc66a1 ENSMUST00000141007 ENSMUSP00000119780 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000028744 Slc66a1 ENSMUST00000172747 ENSMUSP00000134464 TRANSLATION protein_coding - CCDS18843.2 5 293.0 0.0 0.0 9.4 101.9 5.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000028744 Slc66a1 ENSMUST00000105801 ENSMUSP00000101427 TRANSLATION protein_coding - - 2 350.0 0.0 0.0 0.0 101.9 4.0 -4,-7 0.0597 - 6.0 MINOR ENSMUSG00000037731 Themis2 ENSMUST00000045154 ENSMUSP00000036945 TRANSLATION protein_coding - CCDS18735.1 1 663.0 0.0 0.0 0.0 243.4 0.0 -4,-5 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000078716 Tmem8b ENSMUST00000143774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078716 Tmem8b ENSMUST00000143339 ENSMUSP00000130133 TRANSLATION protein_coding stop - 5 154.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078716 Tmem8b ENSMUST00000107866 ENSMUSP00000103498 TRANSLATION protein_coding - - 5 931.0 0.0 8.33 4.0 179.4 7.0 -4,-2 0.3839 5 12.945 MINOR ENSMUSG00000078716 Tmem8b ENSMUST00000107864 ENSMUSP00000103496 TRANSLATION protein_coding - CCDS51168.1 5 472.0 0.0 8.33 9.7 180.9 7.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000078716 Tmem8b ENSMUST00000167153 ENSMUSP00000129760 TRANSLATION protein_coding - CCDS51168.1 1 472.0 0.0 8.33 9.7 180.9 7.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000078716 Tmem8b ENSMUST00000141864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078716 Tmem8b ENSMUST00000107865 ENSMUSP00000103497 TRANSLATION protein_coding - CCDS51168.1 1 472.0 0.0 8.33 9.7 180.9 7.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000078716 Tmem8b ENSMUST00000154112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078716 Tmem8b ENSMUST00000134869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066009 Zfp987 ENSMUST00000091878 ENSMUSP00000089493 TRANSLATION protein_coding - CCDS51372.1 1 633.0 56.0 1.0 0.0 387.8 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000066009 Zfp987 ENSMUST00000105730 ENSMUSP00000101355 TRANSLATION protein_coding stop - 3 78.0 0.0 1.0 0.0 50.1 0.0 -4,-5 0.0446 - -2.0 MINOR ENSMUSG00000066009 Zfp987 ENSMUST00000154939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028642 Tmem269 ENSMUST00000212054 ENSMUSP00000148286 TRANSLATION protein_coding - CCDS18574.1 1 254.0 0.0 4.06 1.5 0.0 5.0 -4,-6 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000028642 Tmem269 ENSMUST00000030394 ENSMUSP00000030394 TRANSLATION protein_coding - - 1 202.0 0.0 3.7 1.0 0.0 4.0 1,-3 0.2077 - 5.28 MINOR ENSMUSG00000028341 Nr4a3 ENSMUST00000154186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028341 Nr4a3 ENSMUST00000030025 ENSMUSP00000030025 TRANSLATION protein_coding - CCDS18163.1 1 627.0 8.0 4.5 6.1 185.0 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000028341 Nr4a3 ENSMUST00000133539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028341 Nr4a3 ENSMUST00000153369 ENSMUSP00000121455 TRANSLATION protein_coding start - 5 657.0 8.0 4.5 0.0 185.0 0.0 -4,-6 0.0367 1 -2.0 MINOR ENSMUSG00000028344 Invs ENSMUST00000143433 ENSMUSP00000138580 TRANSLATION nonsense_mediated_decay - - 1 436.0 0.0 8.0 0.0 207.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028344 Invs ENSMUST00000149555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028344 Invs ENSMUST00000129480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028344 Invs ENSMUST00000156602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028344 Invs ENSMUST00000030029 ENSMUSP00000030029 TRANSLATION protein_coding - CCDS18166.1 1 1062.0 0.0 11.0 0.1 318.9 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000028344 Invs ENSMUST00000151762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028434 Epb41l4b ENSMUST00000095076 ENSMUSP00000092687 TRANSLATION protein_coding - - 5 899.0 0.0 6.905 5.7 259.9 0.0 -4,0 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000028434 Epb41l4b ENSMUST00000133859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028434 Epb41l4b ENSMUST00000149109 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028434 Epb41l4b ENSMUST00000030142 ENSMUSP00000030142 TRANSLATION protein_coding - CCDS51180.1 1 527.0 0.0 6.905 0.4 259.9 0.0 -4,0 0.4723 7 12.0 MINOR ENSMUSG00000028434 Epb41l4b ENSMUST00000150665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028434 Epb41l4b ENSMUST00000136337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028434 Epb41l4b ENSMUST00000044022 ENSMUSP00000037625 TRANSLATION protein_coding start - 5 215.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000028621 Cyb5rl ENSMUST00000156406 - NO_TRANSLATION retained_intron ENSMUSG00000028621 Cyb5rl ENSMUST00000145324 ENSMUSP00000122502 TRANSLATION protein_coding stop - 5 82.0 10.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028621 Cyb5rl ENSMUST00000106758 ENSMUSP00000102369 TRANSLATION protein_coding - CCDS84765.1 5 316.0 45.0 3.95 4.9 120.6 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000028621 Cyb5rl ENSMUST00000127916 ENSMUSP00000123206 TRANSLATION protein_coding start - 2 45.0 3.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028621 Cyb5rl ENSMUST00000106756 ENSMUSP00000102367 TRANSLATION protein_coding - CCDS38829.1 1 256.0 35.0 3.95 0.0 120.6 0.0 -4,-5 0.0923 - 12.0 MINOR ENSMUSG00000028621 Cyb5rl ENSMUST00000149453 ENSMUSP00000121581 TRANSLATION nonsense_mediated_decay - - 1 86.0 10.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028621 Cyb5rl ENSMUST00000106760 ENSMUSP00000102371 TRANSLATION protein_coding - - 3 167.0 15.0 1.45 0.0 49.7 0.0 -4,-5 0.0 1 2.748 MINOR ENSMUSG00000028621 Cyb5rl ENSMUST00000137269 ENSMUSP00000119249 TRANSLATION protein_coding start - 5 181.0 24.0 2.65 0.0 82.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028621 Cyb5rl ENSMUST00000030364 ENSMUSP00000030364 TRANSLATION protein_coding - - 1 281.0 39.0 3.15 0.0 86.3 0.0 -4,-5 0.0042 1 10.338 MINOR ENSMUSG00000028621 Cyb5rl ENSMUST00000154283 ENSMUSP00000119366 TRANSLATION protein_coding stop - 5 87.0 10.0 0.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028621 Cyb5rl ENSMUST00000126207 ENSMUSP00000116114 TRANSLATION nonsense_mediated_decay start - 1 80.0 10.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000050141 Spata31f3 ENSMUST00000107978 ENSMUSP00000103612 TRANSLATION protein_coding - - 1 371.0 0.0 0.0 0.0 86.8 1.0 -4,-6 0.7205 4 2.0 PRINCIPAL:4 ENSMUSG00000050141 Spata31f3 ENSMUST00000144112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050141 Spata31f3 ENSMUST00000134400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050141 Spata31f3 ENSMUST00000055944 ENSMUSP00000060318 TRANSLATION protein_coding - CCDS18082.1 1 370.0 0.0 0.0 0.0 86.8 1.0 -4,-6 0.63 4 2.0 ALTERNATIVE:2 ENSMUSG00000057530 Ece1 ENSMUST00000130407 ENSMUSP00000125529 TRANSLATION protein_coding stop - 1 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057530 Ece1 ENSMUST00000102518 ENSMUSP00000099576 TRANSLATION protein_coding - CCDS18822.1 1 753.0 3.0 16.05 27.4 674.2 1.0 -4,-5 1.0 22 19.0 PRINCIPAL:1 ENSMUSG00000057530 Ece1 ENSMUST00000151110 ENSMUSP00000114671 TRANSLATION protein_coding stop - 3 205.0 0.0 2.8 0.0 98.3 1.0 -2,-4 0.0 1 -2.0 MINOR ENSMUSG00000057530 Ece1 ENSMUST00000129607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028756 Pink1 ENSMUST00000105817 ENSMUSP00000101443 TRANSLATION protein_coding - - 5 550.0 0.0 4.04 0.0 82.3 0.0 -4,-1 0.066 2 12.0 MINOR ENSMUSG00000028756 Pink1 ENSMUST00000105816 ENSMUSP00000101442 TRANSLATION protein_coding - - 1 168.0 0.0 0.96 0.0 29.7 0.0 -4,-5 0.0 - 2.166 MINOR ENSMUSG00000028756 Pink1 ENSMUST00000030536 ENSMUSP00000030536 TRANSLATION protein_coding - CCDS18825.1 1 580.0 0.0 4.04 8.9 82.3 0.0 -4,0 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000038330 Pramel32 ENSMUST00000107142 ENSMUSP00000102760 TRANSLATION protein_coding - - 2 124.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0073 - 0.984 MINOR ENSMUSG00000038330 Pramel32 ENSMUST00000107143 ENSMUSP00000102761 TRANSLATION protein_coding - - 5 195.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0136 - 1.98 MINOR ENSMUSG00000038330 Pramel32 ENSMUST00000134155 ENSMUSP00000138546 TRANSLATION protein_coding stop - 1 140.0 0.0 0.759 0.0 0.0 0.0 -4,-5 0.0077 - -2.0 MINOR ENSMUSG00000038330 Pramel32 ENSMUST00000156062 ENSMUSP00000138736 TRANSLATION protein_coding stop - 2 178.0 0.0 0.9 0.0 0.0 0.0 -4,-2 0.026 - -2.0 MINOR ENSMUSG00000038330 Pramel32 ENSMUST00000053304 ENSMUSP00000056691 TRANSLATION protein_coding - CCDS51221.1 1 493.0 0.0 3.309 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000052135 Foxo6 ENSMUST00000102656 ENSMUSP00000099716 TRANSLATION protein_coding - CCDS18588.1 1 559.0 0.0 0.6 3.5 199.9 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000023232 Serinc2 ENSMUST00000120126 ENSMUSP00000113044 TRANSLATION protein_coding - - 5 459.0 0.0 4.124 0.0 515.1 19.0 -4,-6 0.1183 2 12.0 MINOR ENSMUSG00000023232 Serinc2 ENSMUST00000154846 ENSMUSP00000116586 TRANSLATION protein_coding stop - 5 82.0 0.0 1.094 0.0 84.4 3.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000023232 Serinc2 ENSMUST00000122374 ENSMUSP00000112535 TRANSLATION protein_coding - CCDS57301.1 1 395.0 0.0 3.924 7.2 469.0 17.0 -4,-7 0.6378 2 10.947 MINOR ENSMUSG00000023232 Serinc2 ENSMUST00000105996 ENSMUSP00000101618 TRANSLATION protein_coding - CCDS51310.1 1 450.0 0.0 4.124 9.8 515.1 19.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000023232 Serinc2 ENSMUST00000146478 ENSMUSP00000115198 TRANSLATION protein_coding stop - 3 148.0 0.0 2.444 0.0 184.4 7.0 -4,-7 0.0037 1 -2.0 MINOR ENSMUSG00000028224 Nbn ENSMUST00000029879 ENSMUSP00000029879 TRANSLATION protein_coding - CCDS17986.1 1 751.0 0.0 3.83 1.6 272.3 0.0 -4,-6 1.0 19 13.0 PRINCIPAL:1 ENSMUSG00000028224 Nbn ENSMUST00000149069 ENSMUSP00000120829 TRANSLATION protein_coding stop - 1 548.0 0.0 3.83 0.0 161.0 0.0 -4,-6 0.0324 16 -2.0 MINOR ENSMUSG00000063524 Eno1 ENSMUST00000136310 - NO_TRANSLATION retained_intron ENSMUSG00000063524 Eno1 ENSMUST00000148605 - NO_TRANSLATION retained_intron ENSMUSG00000063524 Eno1 ENSMUST00000133839 ENSMUSP00000114361 TRANSLATION protein_coding stop - 3 221.0 1.0 5.25 0.0 336.4 0.0 -4,-6 0.0007 12 -2.0 MINOR ENSMUSG00000063524 Eno1 ENSMUST00000130632 - NO_TRANSLATION retained_intron ENSMUSG00000063524 Eno1 ENSMUST00000135063 - NO_TRANSLATION retained_intron ENSMUSG00000063524 Eno1 ENSMUST00000141931 ENSMUSP00000120059 TRANSLATION protein_coding stop - 5 67.0 1.0 2.08 0.0 98.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000063524 Eno1 ENSMUST00000080149 ENSMUSP00000079045 TRANSLATION protein_coding - - 1 366.0 5.0 7.625 0.0 600.9 0.0 -4,-5 0.0032 18 6.09 MINOR ENSMUSG00000063524 Eno1 ENSMUST00000150175 ENSMUSP00000123695 TRANSLATION protein_coding stop - 2 119.0 1.0 3.83 0.0 181.6 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000063524 Eno1 ENSMUST00000080926 ENSMUSP00000079727 TRANSLATION protein_coding - CCDS18971.1 1 434.0 6.0 10.08 36.9 722.6 0.0 -4,-6 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000063524 Eno1 ENSMUST00000133789 - NO_TRANSLATION retained_intron ENSMUSG00000063524 Eno1 ENSMUST00000151057 - NO_TRANSLATION retained_intron ENSMUSG00000040935 Padi6 ENSMUST00000125046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040935 Padi6 ENSMUST00000130267 ENSMUSP00000123490 TRANSLATION protein_coding stop - 3 190.0 0.0 3.33 0.0 165.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000040935 Padi6 ENSMUST00000038749 ENSMUSP00000044044 TRANSLATION protein_coding - CCDS38936.1 1 682.0 3.0 10.295 1.4 774.8 0.0 -3,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000037028 Pramel18 ENSMUST00000075999 ENSMUSP00000075380 TRANSLATION protein_coding - - 5 484.0 0.0 2.12 0.0 0.0 0.0 -4,-7 0.6587 - 6.0 PRINCIPAL:1 ENSMUSG00000070605 Zfp992 ENSMUST00000105733 ENSMUSP00000101359 TRANSLATION protein_coding - CCDS57310.1 3 573.0 48.0 1.0 0.0 316.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028212 Ccne2 ENSMUST00000029866 ENSMUSP00000029866 TRANSLATION protein_coding - CCDS17966.1 1 403.0 0.0 6.6 12.5 215.1 0.0 -4,-2 0.9984 - 11.0 ALTERNATIVE:1 ENSMUSG00000028212 Ccne2 ENSMUST00000149075 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028212 Ccne2 ENSMUST00000170901 ENSMUSP00000130693 TRANSLATION protein_coding - CCDS17965.1 1 404.0 0.0 6.6 12.5 215.1 0.0 -4,-2 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000028212 Ccne2 ENSMUST00000145430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028212 Ccne2 ENSMUST00000108324 ENSMUSP00000103960 TRANSLATION protein_coding - CCDS17965.1 1 404.0 0.0 6.6 12.5 215.1 0.0 -4,-2 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000028212 Ccne2 ENSMUST00000147725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028212 Ccne2 ENSMUST00000144438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057280 Musk ENSMUST00000135879 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057280 Musk ENSMUST00000177951 ENSMUSP00000136696 TRANSLATION protein_coding - CCDS38770.1 5 870.0 19.0 8.64 5.9 526.7 1.0 -1,-4 0.9165 - 15.839 ALTERNATIVE:1 ENSMUSG00000057280 Musk ENSMUST00000102893 ENSMUSP00000099957 TRANSLATION protein_coding - CCDS18210.1 5 860.0 19.0 8.64 7.8 526.7 1.0 -1,-4 1.0 - 16.55 PRINCIPAL:4 ENSMUSG00000057280 Musk ENSMUST00000084578 ENSMUSP00000081625 TRANSLATION protein_coding - CCDS18211.1 5 868.0 19.0 8.31 9.0 526.7 1.0 -1,-4 0.9701 - 16.34 ALTERNATIVE:1 ENSMUSG00000028274 Rngtt ENSMUST00000130138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028274 Rngtt ENSMUST00000146870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028274 Rngtt ENSMUST00000155397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028274 Rngtt ENSMUST00000029942 ENSMUSP00000029942 TRANSLATION protein_coding - CCDS84712.1 1 581.0 13.0 13.45 0.4 352.5 0.0 -4,-2 0.1504 14 15.432 MINOR ENSMUSG00000028274 Rngtt ENSMUST00000108153 ENSMUSP00000103788 TRANSLATION protein_coding - CCDS38705.1 1 597.0 13.0 14.2 0.4 370.3 0.0 -4,-2 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000028228 Cpne3 ENSMUST00000108254 - NO_TRANSLATION retained_intron ENSMUSG00000028228 Cpne3 ENSMUST00000134025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028228 Cpne3 ENSMUST00000029885 ENSMUSP00000029885 TRANSLATION protein_coding - CCDS17991.1 1 533.0 5.0 12.75 35.0 410.4 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000041333 Mup4 ENSMUST00000075973 ENSMUSP00000075356 TRANSLATION protein_coding - CCDS18228.1 1 178.0 0.0 4.68 0.0 122.3 0.0 3,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000059816 Shisal2a ENSMUST00000053157 ENSMUSP00000060463 TRANSLATION protein_coding - CCDS38833.1 5 189.0 0.0 1.8 6.2 0.0 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000025418 Bsnd ENSMUST00000054472 ENSMUSP00000049563 TRANSLATION protein_coding - CCDS18419.1 1 307.0 3.0 0.0 0.4 354.1 0.0 -1,-5 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000024903 Lao1 ENSMUST00000058651 ENSMUSP00000062834 TRANSLATION protein_coding - CCDS18568.1 1 523.0 37.0 5.75 1.2 248.0 0.0 3,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000024903 Lao1 ENSMUST00000142457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041261 Car8 ENSMUST00000066674 ENSMUSP00000063511 TRANSLATION protein_coding - CCDS17954.1 1 291.0 3.0 6.85 14.4 270.9 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000078570 1110065P20Rik ENSMUST00000106190 ENSMUSP00000101796 TRANSLATION protein_coding - CCDS84792.1 2 110.0 0.0 1.5 7.6 207.9 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000078570 1110065P20Rik ENSMUST00000185036 ENSMUSP00000139121 TRANSLATION protein_coding - - 2 158.0 0.0 1.5 0.0 203.7 0.0 -4,-6 0.0411 3 11.748 MINOR ENSMUSG00000078570 1110065P20Rik ENSMUST00000184704 - NO_TRANSLATION retained_intron ENSMUSG00000078570 1110065P20Rik ENSMUST00000163946 ENSMUSP00000130892 TRANSLATION protein_coding - CCDS51298.1 2 47.0 0.0 0.5 5.7 87.8 0.0 -4,-2 0.4513 1 3.422 MINOR ENSMUSG00000078570 1110065P20Rik ENSMUST00000137769 ENSMUSP00000138806 TRANSLATION protein_coding - CCDS51298.1 1 47.0 0.0 0.5 5.7 87.8 0.0 -4,-2 0.4513 1 3.422 MINOR ENSMUSG00000078570 1110065P20Rik ENSMUST00000125776 ENSMUSP00000138901 TRANSLATION protein_coding start - 2 126.0 0.0 1.5 0.0 204.9 0.0 -4,-6 0.0413 2 -2.0 MINOR ENSMUSG00000049969 Plekhf2 ENSMUST00000137891 ENSMUSP00000123520 TRANSLATION protein_coding stop - 3 197.0 6.0 1.0 0.0 94.8 0.0 -4,-5 0.0034 6 -2.0 MINOR ENSMUSG00000049969 Plekhf2 ENSMUST00000054776 ENSMUSP00000054745 TRANSLATION protein_coding - CCDS17962.1 1 249.0 6.0 1.6 1.1 108.0 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000028675 Pnrc2 ENSMUST00000030436 ENSMUSP00000030436 TRANSLATION protein_coding - CCDS18792.1 1 140.0 0.0 0.6 24.9 29.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028675 Pnrc2 ENSMUST00000142585 ENSMUSP00000120788 TRANSLATION protein_coding stop - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028675 Pnrc2 ENSMUST00000180300 ENSMUSP00000136785 TRANSLATION protein_coding - - 1 56.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0003 - 0.0 MINOR ENSMUSG00000028639 Ybx1 ENSMUST00000142884 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028639 Ybx1 ENSMUST00000152733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028639 Ybx1 ENSMUST00000139897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028639 Ybx1 ENSMUST00000145976 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028639 Ybx1 ENSMUST00000079644 ENSMUSP00000078589 TRANSLATION protein_coding - CCDS18579.1 1 322.0 0.0 2.33 13.1 90.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000028639 Ybx1 ENSMUST00000127737 ENSMUSP00000117225 TRANSLATION protein_coding start - 5 214.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000028639 Ybx1 ENSMUST00000144992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078508 Pramel30 ENSMUST00000105751 ENSMUSP00000101377 TRANSLATION protein_coding - CCDS38952.1 5 475.0 0.0 1.9 0.1 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000063172 Ift25 ENSMUST00000106749 ENSMUSP00000102360 TRANSLATION protein_coding - CCDS18435.1 1 143.0 5.0 4.25 16.0 0.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000063172 Ift25 ENSMUST00000156934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063172 Ift25 ENSMUST00000152717 ENSMUSP00000118617 TRANSLATION protein_coding stop - 2 143.0 5.0 4.25 16.0 0.0 0.0 -4,-5 0.8552 3 -2.0 MINOR ENSMUSG00000063172 Ift25 ENSMUST00000137911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063172 Ift25 ENSMUST00000046558 ENSMUSP00000048810 TRANSLATION protein_coding - CCDS18435.1 1 143.0 5.0 4.25 16.0 0.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000041936 Agrn ENSMUST00000180572 ENSMUSP00000137931 TRANSLATION protein_coding - CCDS19060.2 5 2034.0 14.0 18.1005 0.0 1076.0 0.0 1,-2 1.0 47 18.0 PRINCIPAL:1 ENSMUSG00000041936 Agrn ENSMUST00000105574 ENSMUSP00000101199 TRANSLATION protein_coding - - 5 1927.0 14.0 16.3005 0.0 929.8 0.0 -4,-7 0.2411 44 8.4 MINOR ENSMUSG00000041936 Agrn ENSMUST00000105575 ENSMUSP00000101200 TRANSLATION protein_coding - - 5 1950.0 14.0 16.548 0.1 929.7 0.0 -4,-7 0.2557 42 8.892 MINOR ENSMUSG00000041936 Agrn ENSMUST00000144749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041936 Agrn ENSMUST00000181062 - NO_TRANSLATION retained_intron ENSMUSG00000041936 Agrn ENSMUST00000071248 ENSMUSP00000071229 TRANSLATION protein_coding - - 5 1151.0 3.0 6.6505 0.0 483.5 0.0 -4,-7 0.0181 27 0.0 MINOR ENSMUSG00000041936 Agrn ENSMUST00000154494 - NO_TRANSLATION retained_intron ENSMUSG00000028750 Pla2g2c ENSMUST00000105808 ENSMUSP00000101434 TRANSLATION protein_coding - CCDS18831.1 5 150.0 3.0 3.45 6.9 122.5 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000028750 Pla2g2c ENSMUST00000124660 ENSMUSP00000124341 TRANSLATION protein_coding stop - 3 128.0 3.0 3.0 0.0 117.5 0.0 3,-2 0.0246 - -2.0 MINOR ENSMUSG00000028750 Pla2g2c ENSMUST00000030530 ENSMUSP00000030530 TRANSLATION protein_coding - CCDS18831.1 3 150.0 3.0 3.45 6.9 122.5 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000028522 Mier1 ENSMUST00000143417 ENSMUSP00000121587 TRANSLATION protein_coding stop - 3 15.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000028522 Mier1 ENSMUST00000106857 ENSMUSP00000102470 TRANSLATION protein_coding - CCDS38825.1 1 511.0 4.0 1.97 10.3 65.5 0.0 -4,-5 0.9568 10 15.0 ALTERNATIVE:1 ENSMUSG00000028522 Mier1 ENSMUST00000151588 - NO_TRANSLATION retained_intron ENSMUSG00000028522 Mier1 ENSMUST00000136092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028522 Mier1 ENSMUST00000124348 - NO_TRANSLATION retained_intron ENSMUSG00000028522 Mier1 ENSMUST00000106855 ENSMUSP00000102468 TRANSLATION protein_coding - - 1 330.0 4.0 1.97 0.0 63.3 0.0 -4,-5 0.0352 9 12.0 MINOR ENSMUSG00000028522 Mier1 ENSMUST00000149259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028522 Mier1 ENSMUST00000128536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028522 Mier1 ENSMUST00000134533 ENSMUSP00000123637 TRANSLATION protein_coding stop - 5 28.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000028522 Mier1 ENSMUST00000144219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028522 Mier1 ENSMUST00000106858 ENSMUSP00000102471 TRANSLATION protein_coding - CCDS18408.1 1 528.0 4.0 1.97 10.3 65.5 0.0 -2,-4 1.0 10 15.0 PRINCIPAL:4 ENSMUSG00000028522 Mier1 ENSMUST00000097945 ENSMUSP00000095558 TRANSLATION protein_coding - CCDS71432.1 1 556.0 4.0 1.97 0.0 65.5 0.0 0,-3 0.2407 10 12.0 MINOR ENSMUSG00000028522 Mier1 ENSMUST00000147491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028522 Mier1 ENSMUST00000137348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028522 Mier1 ENSMUST00000030247 ENSMUSP00000030247 TRANSLATION protein_coding - CCDS18408.1 1 528.0 4.0 1.97 10.3 65.5 0.0 -2,-4 1.0 10 15.0 PRINCIPAL:4 ENSMUSG00000059810 Rgs3 ENSMUST00000138674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059810 Rgs3 ENSMUST00000127254 - NO_TRANSLATION retained_intron ENSMUSG00000059810 Rgs3 ENSMUST00000107424 ENSMUSP00000103047 TRANSLATION protein_coding - CCDS38776.1 1 433.0 0.0 1.95 10.4 30.3 0.0 -4,-2 1.0 4 3.0 MINOR ENSMUSG00000059810 Rgs3 ENSMUST00000144489 - NO_TRANSLATION retained_intron ENSMUSG00000059810 Rgs3 ENSMUST00000084521 ENSMUSP00000081569 TRANSLATION protein_coding - CCDS51202.1 5 966.0 0.0 4.7 0.1 157.5 0.0 -4,-2 0.2875 14 8.502 MINOR ENSMUSG00000059810 Rgs3 ENSMUST00000126338 ENSMUSP00000116041 TRANSLATION protein_coding stop - 2 108.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000059810 Rgs3 ENSMUST00000146083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059810 Rgs3 ENSMUST00000153875 ENSMUSP00000123310 TRANSLATION protein_coding start - 2 126.0 0.0 2.132 0.0 125.2 0.0 -4,-5 0.0013 3 -2.0 MINOR ENSMUSG00000059810 Rgs3 ENSMUST00000142684 - NO_TRANSLATION retained_intron ENSMUSG00000059810 Rgs3 ENSMUST00000142565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059810 Rgs3 ENSMUST00000098031 ENSMUSP00000095639 TRANSLATION protein_coding - - 5 602.0 0.0 6.45 8.8 81.9 0.0 -4,0 0.9517 4 9.954 PRINCIPAL:1 ENSMUSG00000059810 Rgs3 ENSMUST00000065870 ENSMUSP00000065447 TRANSLATION protein_coding - CCDS18246.1 1 610.0 0.0 6.45 0.1 81.9 0.0 -4,-5 0.2792 4 7.464 MINOR ENSMUSG00000059810 Rgs3 ENSMUST00000107420 ENSMUSP00000103043 TRANSLATION protein_coding - CCDS80110.1 1 568.0 0.0 2.75 0.1 127.2 0.0 -4,-5 0.0289 10 4.182 MINOR ENSMUSG00000059810 Rgs3 ENSMUST00000125369 ENSMUSP00000159172 TRANSLATION protein_coding - - 1 192.0 0.0 2.75 4.3 127.2 0.0 -4,-2 0.1177 4 5.235 MINOR ENSMUSG00000059810 Rgs3 ENSMUST00000143042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059810 Rgs3 ENSMUST00000154071 - NO_TRANSLATION retained_intron ENSMUSG00000059810 Rgs3 ENSMUST00000124082 ENSMUSP00000115192 TRANSLATION protein_coding stop - 2 261.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 3 -2.0 MINOR ENSMUSG00000095409 Gm13043 ENSMUST00000178489 ENSMUSP00000137329 TRANSLATION protein_coding - CCDS18891.1 1 481.0 0.0 2.1 0.4 0.0 0.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078517 Emc1 ENSMUST00000179784 ENSMUSP00000137103 TRANSLATION protein_coding - CCDS38933.1 1 997.0 0.0 18.2 7.4 250.4 1.0 4,-1 0.9693 27 10.0 ALTERNATIVE:1 ENSMUSG00000078517 Emc1 ENSMUST00000144335 - NO_TRANSLATION retained_intron ENSMUSG00000078517 Emc1 ENSMUST00000155700 ENSMUSP00000152874 TRANSLATION nonsense_mediated_decay start - 1 320.0 0.0 5.515 0.0 0.0 0.0 -3,-5 0.0008 7 -2.0 MINOR ENSMUSG00000078517 Emc1 ENSMUST00000042096 ENSMUSP00000049034 TRANSLATION protein_coding - CCDS18846.1 1 994.0 0.0 18.2 7.4 250.4 1.0 4,-1 1.0 28 10.0 PRINCIPAL:3 ENSMUSG00000038007 Acer2 ENSMUST00000128712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038007 Acer2 ENSMUST00000084433 ENSMUSP00000081473 TRANSLATION protein_coding - CCDS71417.1 1 229.0 0.0 5.0 2.0 171.0 5.0 -4,-7 0.0519 - 9.14 MINOR ENSMUSG00000038007 Acer2 ENSMUST00000135874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038007 Acer2 ENSMUST00000045224 ENSMUSP00000040048 TRANSLATION protein_coding - CCDS18311.1 1 275.0 0.0 6.0 25.5 188.1 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000045071 E130308A19Rik ENSMUST00000221633 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045071 E130308A19Rik ENSMUST00000070150 ENSMUSP00000065702 TRANSLATION protein_coding - CCDS18223.1 1 716.0 0.0 0.0 13.4 125.3 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000045071 E130308A19Rik ENSMUST00000152797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045071 E130308A19Rik ENSMUST00000052420 ENSMUSP00000062493 TRANSLATION protein_coding - CCDS18224.1 1 737.0 0.0 0.0 8.8 67.8 0.0 -4,-5 0.5858 - 5.066 MINOR ENSMUSG00000028233 Tgs1 ENSMUST00000132518 - NO_TRANSLATION retained_intron ENSMUSG00000028233 Tgs1 ENSMUST00000130514 - NO_TRANSLATION retained_intron ENSMUSG00000028233 Tgs1 ENSMUST00000146315 - NO_TRANSLATION retained_intron ENSMUSG00000028233 Tgs1 ENSMUST00000129964 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028233 Tgs1 ENSMUST00000052712 ENSMUSP00000054112 TRANSLATION protein_coding - CCDS17938.1 1 853.0 17.0 4.75 0.0 29.4 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000020220 Vps13d ENSMUST00000130704 ENSMUSP00000118699 TRANSLATION nonsense_mediated_decay start - 1 1078.0 0.0 0.0 0.0 351.6 0.0 -4,-6 0.0106 16 -2.0 MINOR ENSMUSG00000020220 Vps13d ENSMUST00000144835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020220 Vps13d ENSMUST00000142308 - NO_TRANSLATION retained_intron ENSMUSG00000020220 Vps13d ENSMUST00000185113 ENSMUSP00000138946 TRANSLATION protein_coding start - 5 3211.0 0.0 0.0 0.0 378.0 0.0 -4,-6 0.0649 57 -2.0 MINOR ENSMUSG00000020220 Vps13d ENSMUST00000147511 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020220 Vps13d ENSMUST00000155670 - NO_TRANSLATION retained_intron ENSMUSG00000020220 Vps13d ENSMUST00000036579 ENSMUSP00000043240 TRANSLATION protein_coding - CCDS71517.1 5 4390.0 0.0 1.37 5.3 779.5 0.0 -4,-7 0.9859 76 12.836 MINOR ENSMUSG00000020220 Vps13d ENSMUST00000020441 ENSMUSP00000020441 TRANSLATION protein_coding - - 5 4359.0 0.0 1.7 5.2 779.5 0.0 -4,-7 1.0 76 13.954 PRINCIPAL:1 ENSMUSG00000020220 Vps13d ENSMUST00000141208 - NO_TRANSLATION retained_intron ENSMUSG00000020220 Vps13d ENSMUST00000132700 - NO_TRANSLATION retained_intron ENSMUSG00000066107 Larp7-ps ENSMUST00000123179 ENSMUSP00000122212 TRANSLATION protein_coding start/stop - 5 254.0 0.0 1.4 0.0 57.2 0.0 -4,-5 0.7636 - -2.0 PRINCIPAL:1 ENSMUSG00000040690 Col16a1 ENSMUST00000132251 ENSMUSP00000121209 TRANSLATION protein_coding stop - 3 22.0 0.0 0.0 0.0 0.0 0.0 0,-6 0.0106 - -2.0 MINOR ENSMUSG00000040690 Col16a1 ENSMUST00000135675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040690 Col16a1 ENSMUST00000097867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040690 Col16a1 ENSMUST00000143577 ENSMUSP00000120339 TRANSLATION protein_coding start - 1 1283.0 0.0 15.632 0.0 259.1 0.0 -4,-5 0.2273 6 -2.0 MINOR ENSMUSG00000040690 Col16a1 ENSMUST00000146606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040690 Col16a1 ENSMUST00000044565 ENSMUSP00000035802 TRANSLATION protein_coding - CCDS38889.1 1 1580.0 0.0 20.68575 0.0 258.3 0.0 3,-1 1.0 10 11.952 PRINCIPAL:1 ENSMUSG00000040690 Col16a1 ENSMUST00000154441 - NO_TRANSLATION retained_intron ENSMUSG00000040690 Col16a1 ENSMUST00000142293 ENSMUSP00000119219 TRANSLATION protein_coding stop - 2 61.0 0.0 0.45375 0.0 0.0 0.0 3,-1 0.0011 - -2.0 MINOR ENSMUSG00000040690 Col16a1 ENSMUST00000123617 ENSMUSP00000121415 TRANSLATION protein_coding stop - 5 129.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000040690 Col16a1 ENSMUST00000106001 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040690 Col16a1 ENSMUST00000143432 ENSMUSP00000120384 TRANSLATION nonsense_mediated_decay - - 1 1046.0 0.0 11.26675 0.0 166.9 0.0 3,-1 0.0153 7 -2.0 MINOR ENSMUSG00000040690 Col16a1 ENSMUST00000129937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040690 Col16a1 ENSMUST00000151541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042489 Clspn ENSMUST00000128202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042489 Clspn ENSMUST00000147675 ENSMUSP00000116699 TRANSLATION protein_coding stop - 3 163.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0163 - -2.0 MINOR ENSMUSG00000042489 Clspn ENSMUST00000048391 ENSMUSP00000045344 TRANSLATION protein_coding - CCDS18655.1 1 1315.0 0.0 0.0 0.0 0.0 0.0 -4,-5 1.0 5 0.0 PRINCIPAL:1 ENSMUSG00000042489 Clspn ENSMUST00000129795 ENSMUSP00000120683 TRANSLATION protein_coding start/stop - 3 261.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0361 - -2.0 MINOR ENSMUSG00000042489 Clspn ENSMUST00000146944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042489 Clspn ENSMUST00000123695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042489 Clspn ENSMUST00000126512 ENSMUSP00000119437 TRANSLATION protein_coding start/stop - 1 387.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0504 1 -2.0 MINOR ENSMUSG00000009863 Sdhb ENSMUST00000129181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009863 Sdhb ENSMUST00000010007 ENSMUSP00000010007 TRANSLATION protein_coding - CCDS18858.1 1 282.0 41.0 6.5 14.7 0.0 0.0 -3,1 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000009863 Sdhb ENSMUST00000125780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034557 Zfyve9 ENSMUST00000106657 ENSMUSP00000102268 TRANSLATION protein_coding - CCDS84772.1 5 1397.0 8.0 9.4565 0.1 718.5 0.0 -4,-5 1.0 22 18.0 PRINCIPAL:1 ENSMUSG00000034557 Zfyve9 ENSMUST00000106658 ENSMUSP00000102269 TRANSLATION protein_coding - - 5 1338.0 8.0 8.4565 0.1 649.4 0.0 -4,-5 0.0901 22 11.856 MINOR ENSMUSG00000034557 Zfyve9 ENSMUST00000042185 ENSMUSP00000039852 TRANSLATION protein_coding - CCDS38834.1 1 706.0 4.0 8.6265 0.0 653.6 0.0 -4,-7 0.0641 9 9.444 MINOR ENSMUSG00000028644 Ermap ENSMUST00000124626 ENSMUSP00000120202 TRANSLATION protein_coding stop - 3 162.0 0.0 2.6995 0.0 38.1 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000028644 Ermap ENSMUST00000239029 ENSMUSP00000159033 TRANSLATION protein_coding - - - 566.0 0.0 6.8365 1.4 179.1 2.0 -3,-4 0.7374 1 9.0 PRINCIPAL:4 ENSMUSG00000028644 Ermap ENSMUST00000150864 ENSMUSP00000123484 TRANSLATION protein_coding stop - 3 64.0 0.0 0.5495 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000028644 Ermap ENSMUST00000141227 ENSMUSP00000122864 TRANSLATION protein_coding stop - 2 108.0 0.0 0.9495 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000028644 Ermap ENSMUST00000133956 ENSMUSP00000120181 TRANSLATION protein_coding stop - 3 185.0 0.0 3.4495 0.0 38.3 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000028644 Ermap ENSMUST00000127574 - NO_TRANSLATION retained_intron ENSMUSG00000028644 Ermap ENSMUST00000156746 ENSMUSP00000118640 TRANSLATION protein_coding stop - 3 61.0 0.0 0.0495 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000028644 Ermap ENSMUST00000138395 ENSMUSP00000123426 TRANSLATION protein_coding - CCDS18571.1 1 592.0 0.0 6.8365 0.0 179.1 2.0 -4,-1 0.657 1 8.0 ALTERNATIVE:2 ENSMUSG00000028644 Ermap ENSMUST00000137080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028644 Ermap ENSMUST00000030396 ENSMUSP00000030396 TRANSLATION protein_coding - - 2 308.0 0.0 4.9475 0.0 38.3 2.0 -3,-4 0.0036 - 2.72 MINOR ENSMUSG00000057977 Skint11 ENSMUST00000164297 ENSMUSP00000127138 TRANSLATION protein_coding - CCDS51270.1 1 364.0 0.0 1.15 0.0 0.0 4.0 1,-3 0.9637 - 5.52 PRINCIPAL:1 ENSMUSG00000057977 Skint11 ENSMUST00000079915 ENSMUSP00000078836 TRANSLATION protein_coding - CCDS51271.1 1 173.0 0.0 0.15 0.0 0.0 3.0 -2,-5 0.2295 - 0.72 MINOR ENSMUSG00000057977 Skint11 ENSMUST00000151810 ENSMUSP00000119157 TRANSLATION protein_coding stop - 5 184.0 0.0 1.0 0.0 0.0 2.0 -4,-5 0.0256 - -2.0 MINOR ENSMUSG00000057977 Skint11 ENSMUST00000145797 ENSMUSP00000118895 TRANSLATION protein_coding stop - 5 189.0 0.0 1.25 0.0 0.0 1.0 1,-3 0.1946 - -2.0 MINOR ENSMUSG00000028411 Aptx ENSMUST00000129021 ENSMUSP00000116966 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000028411 Aptx ENSMUST00000030119 ENSMUSP00000030119 TRANSLATION protein_coding - CCDS38712.1 1 335.0 16.0 5.68 8.1 168.4 0.0 -4,-2 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000028411 Aptx ENSMUST00000155710 ENSMUSP00000124769 TRANSLATION nonsense_mediated_decay - - 3 48.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000028411 Aptx ENSMUST00000068125 ENSMUSP00000124264 TRANSLATION protein_coding - CCDS38711.1 1 342.0 16.0 5.68 0.0 168.4 0.0 -4,-2 0.3066 4 18.0 MINOR ENSMUSG00000028411 Aptx ENSMUST00000128810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028411 Aptx ENSMUST00000108103 ENSMUSP00000103738 TRANSLATION protein_coding - - 5 240.0 16.0 5.08 2.1 168.4 0.0 -4,-2 0.2212 3 17.265 MINOR ENSMUSG00000047155 Cyp4x1 ENSMUST00000106545 ENSMUSP00000102155 TRANSLATION protein_coding - - 1 481.0 30.0 9.7 0.0 389.3 0.0 -4,-1 0.0661 2 17.25 MINOR ENSMUSG00000047155 Cyp4x1 ENSMUST00000051400 ENSMUSP00000059545 TRANSLATION protein_coding - CCDS18488.1 1 507.0 30.0 10.075 11.0 389.3 0.0 0,-3 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000069733 Ube2u ENSMUST00000092730 ENSMUSP00000090406 TRANSLATION protein_coding - - 1 239.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000069733 Ube2u ENSMUST00000133493 ENSMUSP00000137472 TRANSLATION protein_coding - CCDS18390.2 1 352.0 0.0 4.5 0.0 96.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024793 Tnfrsf25 ENSMUST00000153619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024793 Tnfrsf25 ENSMUST00000025706 ENSMUSP00000025706 TRANSLATION protein_coding - CCDS71527.1 1 411.0 0.0 2.32 0.1 86.0 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024793 Tnfrsf25 ENSMUST00000035275 ENSMUSP00000047823 TRANSLATION protein_coding - CCDS38983.1 1 387.0 0.0 1.82 0.0 86.0 0.0 -1,-5 0.149 - 10.704 MINOR ENSMUSG00000024793 Tnfrsf25 ENSMUST00000127111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029061 Mmp23 ENSMUST00000156906 - NO_TRANSLATION retained_intron ENSMUSG00000029061 Mmp23 ENSMUST00000130944 - NO_TRANSLATION retained_intron ENSMUSG00000029061 Mmp23 ENSMUST00000139242 - NO_TRANSLATION retained_intron ENSMUSG00000029061 Mmp23 ENSMUST00000030937 ENSMUSP00000030937 TRANSLATION protein_coding - CCDS19034.1 1 391.0 18.0 3.098 2.4 152.1 0.0 -3,-1 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000062064 Slc2a7 ENSMUST00000059893 ENSMUSP00000059106 TRANSLATION protein_coding - CCDS51385.1 5 525.0 0.0 9.75 0.1 395.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000062064 Slc2a7 ENSMUST00000133379 - NO_TRANSLATION retained_intron ENSMUSG00000078495 Zfp984 ENSMUST00000122309 ENSMUSP00000114023 TRANSLATION protein_coding - CCDS57314.1 5 547.0 44.0 1.0 0.1 326.2 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078495 Zfp984 ENSMUST00000105734 ENSMUSP00000101360 TRANSLATION protein_coding - CCDS57314.1 3 547.0 44.0 1.0 0.1 326.2 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000042357 Gjb5 ENSMUST00000046498 ENSMUSP00000045325 TRANSLATION protein_coding - CCDS18670.1 1 271.0 0.0 0.48 3.4 257.4 0.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000078674 Mup18 ENSMUST00000098040 ENSMUSP00000095648 TRANSLATION protein_coding - CCDS51199.1 1 181.0 0.0 4.88 0.1 110.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035561 Aldh1b1 ENSMUST00000044384 ENSMUSP00000041260 TRANSLATION protein_coding - CCDS18139.1 1 519.0 27.0 2.0 1.4 612.3 0.0 -1,0 1.0 19 19.0 PRINCIPAL:1 ENSMUSG00000035561 Aldh1b1 ENSMUST00000172750 ENSMUSP00000134082 TRANSLATION protein_coding stop - 2 131.0 0.0 1.0 0.0 72.6 0.0 -1,0 0.0 5 -2.0 MINOR ENSMUSG00000028277 Ube2j1 ENSMUST00000124992 ENSMUSP00000118333 TRANSLATION protein_coding - CCDS18019.1 1 318.0 0.0 5.508 13.4 64.3 1.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000028277 Ube2j1 ENSMUST00000029944 ENSMUSP00000029944 TRANSLATION protein_coding stop - 5 157.0 0.0 3.48 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000028277 Ube2j1 ENSMUST00000135924 ENSMUSP00000115757 TRANSLATION protein_coding start - 2 262.0 0.0 4.58 0.0 60.2 1.0 -4,-5 0.0135 7 -2.0 MINOR ENSMUSG00000093996 Spata31f1c ENSMUST00000178192 ENSMUSP00000137159 TRANSLATION protein_coding - - 5 1308.0 0.0 0.0 0.0 122.8 0.0 -4,-5 0.9129 - 6.0 PRINCIPAL:1 ENSMUSG00000055373 Fut9 ENSMUST00000149875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055373 Fut9 ENSMUST00000084770 ENSMUSP00000081826 TRANSLATION protein_coding - CCDS18011.1 1 359.0 8.0 0.8 29.8 363.9 1.0 -2,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000055373 Fut9 ENSMUST00000108199 ENSMUSP00000103834 TRANSLATION protein_coding - CCDS18011.1 1 359.0 8.0 0.8 29.8 363.9 1.0 -2,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000096596 Gm10591 ENSMUST00000178168 ENSMUSP00000136903 TRANSLATION protein_coding - CCDS51158.1 1 133.0 0.0 2.3 6.9 83.3 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000078497 Zfp978 ENSMUST00000133078 ENSMUSP00000115135 TRANSLATION protein_coding stop - 5 97.0 0.0 1.0 0.0 72.1 0.0 -4,-2 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000078497 Zfp978 ENSMUST00000154154 ENSMUSP00000114248 TRANSLATION protein_coding stop - 5 335.0 12.0 2.2 0.0 144.4 0.0 -4,-2 0.7876 - -2.0 PRINCIPAL:5 ENSMUSG00000028669 Pithd1 ENSMUST00000105851 ENSMUSP00000101477 TRANSLATION protein_coding - CCDS51330.1 1 211.0 0.0 4.7 8.1 144.3 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000028669 Pithd1 ENSMUST00000123737 - NO_TRANSLATION retained_intron ENSMUSG00000028669 Pithd1 ENSMUST00000125394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028669 Pithd1 ENSMUST00000123404 ENSMUSP00000117150 TRANSLATION protein_coding stop - 3 65.0 0.0 2.0 0.0 42.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028669 Pithd1 ENSMUST00000133438 - NO_TRANSLATION retained_intron ENSMUSG00000028669 Pithd1 ENSMUST00000147458 ENSMUSP00000119005 TRANSLATION protein_coding stop - 3 118.0 0.0 2.7 1.0 62.5 0.0 -4,-5 0.0147 2 -2.0 MINOR ENSMUSG00000028669 Pithd1 ENSMUST00000150885 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028416 Bag1 ENSMUST00000191273 ENSMUSP00000139864 TRANSLATION protein_coding - CCDS51139.1 1 219.0 0.0 6.0 0.1 59.1 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000028416 Bag1 ENSMUST00000030125 ENSMUSP00000030125 TRANSLATION protein_coding start CCDS38713.1 1 355.0 0.0 6.0 0.1 59.1 0.0 -4,-2 0.3493 10 -2.0 MINOR ENSMUSG00000028416 Bag1 ENSMUST00000108089 ENSMUSP00000103724 TRANSLATION protein_coding - CCDS51139.1 1 219.0 0.0 6.0 0.1 59.1 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000073769 Or10ak9 ENSMUST00000106360 ENSMUSP00000101967 TRANSLATION protein_coding - CCDS18564.1 5 317.0 0.0 1.0 1.5 180.0 6.0 -3,-6 0.6677 - 12.162 MINOR ENSMUSG00000073769 Or10ak9 ENSMUST00000094831 ENSMUSP00000092426 TRANSLATION protein_coding - CCDS18564.1 - 317.0 0.0 1.0 1.5 180.0 6.0 -3,-6 0.6677 - 12.162 MINOR ENSMUSG00000073769 Or10ak9 ENSMUST00000216589 ENSMUSP00000154685 TRANSLATION protein_coding - - 5 316.0 0.0 1.0 7.2 180.0 6.0 -3,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028643 Svbp ENSMUST00000097908 ENSMUSP00000095518 TRANSLATION protein_coding - CCDS18572.1 2 102.0 0.0 2.16 0.4 126.7 0.0 -4,-1 0.2483 - 12.0 MINOR ENSMUSG00000028643 Svbp ENSMUST00000106345 ENSMUSP00000101952 TRANSLATION protein_coding - - 2 71.0 0.0 1.0 0.0 100.6 0.0 -4,-5 0.0003 - 7.212 MINOR ENSMUSG00000028643 Svbp ENSMUST00000210595 ENSMUSP00000147292 TRANSLATION protein_coding - - 5 48.0 0.0 1.0 0.0 58.1 0.0 -4,-5 0.0 - 4.662 MINOR ENSMUSG00000028643 Svbp ENSMUST00000030395 ENSMUSP00000030395 TRANSLATION protein_coding - CCDS38858.1 1 66.0 0.0 2.16 30.9 126.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000023433 Cela3b ENSMUST00000102522 ENSMUSP00000099581 TRANSLATION protein_coding - CCDS18817.1 1 269.0 6.0 5.75 31.7 232.4 0.0 2,-2 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000023433 Cela3b ENSMUST00000134565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039662 Icmt ENSMUST00000125617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039662 Icmt ENSMUST00000048892 ENSMUSP00000043390 TRANSLATION protein_coding - CCDS18998.1 1 284.0 0.0 5.0 8.5 115.9 5.0 -2,-4 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000039662 Icmt ENSMUST00000134242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039662 Icmt ENSMUST00000151372 ENSMUSP00000133950 TRANSLATION nonsense_mediated_decay - - 1 105.0 0.0 2.0 0.0 0.0 3.0 -2,-3 0.0017 1 -2.0 MINOR ENSMUSG00000048747 E130114P18Rik ENSMUST00000151946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048747 E130114P18Rik ENSMUST00000186369 ENSMUSP00000140103 TRANSLATION protein_coding start - 5 101.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0384 - -2.0 MINOR ENSMUSG00000048747 E130114P18Rik ENSMUST00000146447 ENSMUSP00000121284 TRANSLATION protein_coding start - 1 154.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.1231 - -2.0 MINOR ENSMUSG00000048747 E130114P18Rik ENSMUST00000126721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048747 E130114P18Rik ENSMUST00000147925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048747 E130114P18Rik ENSMUST00000148653 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048747 E130114P18Rik ENSMUST00000107067 ENSMUSP00000102682 TRANSLATION protein_coding - - 1 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5655 - 0.0 PRINCIPAL:2 ENSMUSG00000048747 E130114P18Rik ENSMUST00000147069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048747 E130114P18Rik ENSMUST00000107068 ENSMUSP00000102683 TRANSLATION protein_coding - - 3 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0223 - 0.0 ALTERNATIVE:2 ENSMUSG00000040128 Pnrc1 ENSMUST00000155616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040128 Pnrc1 ENSMUST00000137589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040128 Pnrc1 ENSMUST00000049357 ENSMUSP00000040377 TRANSLATION protein_coding - CCDS18023.1 1 297.0 0.0 0.4 0.1 28.0 0.0 -2,0 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000028766 Alpl ENSMUST00000133566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028766 Alpl ENSMUST00000139951 ENSMUSP00000125041 TRANSLATION protein_coding stop - 2 216.0 7.0 4.0 0.0 232.0 0.0 0,-3 0.0 9 -2.0 MINOR ENSMUSG00000028766 Alpl ENSMUST00000153588 ENSMUSP00000116308 TRANSLATION protein_coding stop - 3 157.0 3.0 3.0 0.0 140.3 0.0 0,-3 0.0 6 -2.0 MINOR ENSMUSG00000028766 Alpl ENSMUST00000030551 ENSMUSP00000030551 TRANSLATION protein_coding - CCDS18821.1 1 524.0 13.0 9.75 3.1 599.7 0.0 0,-3 1.0 19 19.0 PRINCIPAL:1 ENSMUSG00000028766 Alpl ENSMUST00000143757 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028766 Alpl ENSMUST00000133473 ENSMUSP00000121548 TRANSLATION protein_coding stop - 3 98.0 1.0 2.0 0.0 58.4 0.0 0,-3 0.0 2 -2.0 MINOR ENSMUSG00000028766 Alpl ENSMUST00000141451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028766 Alpl ENSMUST00000138463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040740 Slc25a34 ENSMUST00000038661 ENSMUSP00000039188 TRANSLATION protein_coding - CCDS18878.1 1 318.0 0.0 4.75 3.3 162.5 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000078503 Zfp990 ENSMUST00000136309 ENSMUSP00000122038 TRANSLATION protein_coding stop - 2 44.0 0.0 1.0 0.0 62.2 0.0 -4,-6 0.0452 - -2.0 MINOR ENSMUSG00000078503 Zfp990 ENSMUST00000105741 ENSMUSP00000101367 TRANSLATION protein_coding - CCDS84822.1 3 605.0 52.0 1.0 0.0 365.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078503 Zfp990 ENSMUST00000105742 ENSMUSP00000101368 TRANSLATION protein_coding - CCDS84822.1 2 605.0 52.0 1.0 0.0 365.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078503 Zfp990 ENSMUST00000128939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094686 Ccl21a ENSMUST00000095114 ENSMUSP00000092732 TRANSLATION protein_coding - CCDS18081.1 1 133.0 0.0 2.3 5.8 82.8 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000078485 Plekhn1 ENSMUST00000105571 ENSMUSP00000101196 TRANSLATION protein_coding - CCDS51407.1 5 611.0 0.0 1.4 0.4 0.0 0.0 -4,-2 0.4397 5 6.0 ALTERNATIVE:2 ENSMUSG00000078485 Plekhn1 ENSMUST00000219227 - NO_TRANSLATION retained_intron ENSMUSG00000078485 Plekhn1 ENSMUST00000217885 ENSMUSP00000151799 TRANSLATION protein_coding - - 5 610.0 0.0 1.4 0.4 0.0 0.0 -4,-2 0.1484 5 6.0 ALTERNATIVE:2 ENSMUSG00000078485 Plekhn1 ENSMUST00000218699 ENSMUSP00000151311 TRANSLATION protein_coding - - 2 571.0 0.0 1.4 0.0 0.0 0.0 -4,-2 0.7145 4 6.0 PRINCIPAL:2 ENSMUSG00000028405 Aco1 ENSMUST00000102973 ENSMUSP00000100038 TRANSLATION protein_coding - CCDS18042.1 1 889.0 21.0 19.5 27.9 156.8 0.0 -4,-5 1.0 35 22.0 PRINCIPAL:1 ENSMUSG00000028405 Aco1 ENSMUST00000142360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028405 Aco1 ENSMUST00000135787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028405 Aco1 ENSMUST00000152911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059939 9430015G10Rik ENSMUST00000105576 ENSMUSP00000101201 TRANSLATION protein_coding - - 1 167.0 0.0 0.8 0.0 226.2 1.0 3,-2 0.0419 2 7.5 MINOR ENSMUSG00000059939 9430015G10Rik ENSMUST00000154944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059939 9430015G10Rik ENSMUST00000141802 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059939 9430015G10Rik ENSMUST00000072554 ENSMUSP00000072366 TRANSLATION protein_coding - CCDS19059.1 1 199.0 0.0 0.8 3.7 301.2 1.0 3,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000059939 9430015G10Rik ENSMUST00000125786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059939 9430015G10Rik ENSMUST00000141882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059939 9430015G10Rik ENSMUST00000127332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059939 9430015G10Rik ENSMUST00000169550 ENSMUSP00000131817 TRANSLATION protein_coding - CCDS19059.1 5 199.0 0.0 0.8 3.7 301.2 1.0 3,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000070990 Foxe1 ENSMUST00000095097 ENSMUSP00000092715 TRANSLATION protein_coding - CCDS18147.1 - 371.0 0.0 0.5 1.0 126.6 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000099420 Gm13279 ENSMUST00000178602 ENSMUSP00000136472 TRANSLATION protein_coding - CCDS57285.1 - 182.0 0.0 0.4 0.0 94.6 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028394 Pole3 ENSMUST00000030091 ENSMUSP00000030091 TRANSLATION protein_coding - CCDS18244.1 1 145.0 0.0 3.5 0.0 50.3 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000028394 Pole3 ENSMUST00000128100 ENSMUSP00000114486 TRANSLATION nonsense_mediated_decay - - 1 51.0 0.0 1.5 0.0 29.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028394 Pole3 ENSMUST00000129930 - NO_TRANSLATION retained_intron ENSMUSG00000034762 Glis1 ENSMUST00000135835 ENSMUSP00000118600 TRANSLATION protein_coding stop - 3 104.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034762 Glis1 ENSMUST00000106738 ENSMUSP00000102349 TRANSLATION protein_coding - - 5 601.0 20.0 2.9 0.0 52.8 0.0 -4,-5 0.0772 - 14.0 ALTERNATIVE:2 ENSMUSG00000034762 Glis1 ENSMUST00000046005 ENSMUSP00000035650 TRANSLATION protein_coding - CCDS38831.1 1 789.0 20.0 2.9 1.4 52.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:2 ENSMUSG00000034762 Glis1 ENSMUST00000125573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034762 Glis1 ENSMUST00000138211 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034762 Glis1 ENSMUST00000130573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070618 Pramel20 ENSMUST00000105774 ENSMUSP00000101400 TRANSLATION protein_coding - CCDS51354.1 1 481.0 0.0 2.1 0.4 0.0 0.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028845 Tekt2 ENSMUST00000141990 ENSMUSP00000114688 TRANSLATION protein_coding stop - 3 25.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028845 Tekt2 ENSMUST00000131113 ENSMUSP00000116659 TRANSLATION protein_coding stop - 3 126.0 0.0 3.05 0.0 102.4 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000028845 Tekt2 ENSMUST00000030658 ENSMUSP00000030658 TRANSLATION protein_coding - CCDS18651.1 1 430.0 0.0 9.8 22.9 429.7 0.0 -4,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028845 Tekt2 ENSMUST00000102616 ENSMUSP00000099676 TRANSLATION protein_coding - CCDS18651.1 5 430.0 0.0 9.8 22.9 429.7 0.0 -4,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028845 Tekt2 ENSMUST00000156139 - NO_TRANSLATION retained_intron ENSMUSG00000028381 Ugcg ENSMUST00000133996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028381 Ugcg ENSMUST00000030074 ENSMUSP00000030074 TRANSLATION protein_coding - CCDS18219.1 1 394.0 0.0 8.75 33.5 197.2 0.0 -2,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000028381 Ugcg ENSMUST00000128227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028381 Ugcg ENSMUST00000155153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028745 Capzb ENSMUST00000042675 ENSMUSP00000038011 TRANSLATION protein_coding - - 1 260.0 0.0 7.25 2.7 359.4 0.0 -4,-6 0.0825 20 6.464 MINOR ENSMUSG00000028745 Capzb ENSMUST00000131912 ENSMUSP00000114973 TRANSLATION protein_coding stop - 2 188.0 0.0 2.83 0.0 207.5 0.0 -4,-5 0.0001 7 -2.0 MINOR ENSMUSG00000028745 Capzb ENSMUST00000132385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028745 Capzb ENSMUST00000138045 ENSMUSP00000122077 TRANSLATION protein_coding stop - 3 204.0 0.0 5.75 0.0 315.4 0.0 -4,-6 0.0045 12 -2.0 MINOR ENSMUSG00000028745 Capzb ENSMUST00000030518 ENSMUSP00000030518 TRANSLATION protein_coding - CCDS71503.1 1 301.0 0.0 7.58 6.9 369.8 0.0 -4,-2 0.4105 20 8.498 MINOR ENSMUSG00000028745 Capzb ENSMUST00000156760 - NO_TRANSLATION retained_intron ENSMUSG00000028745 Capzb ENSMUST00000131793 - NO_TRANSLATION retained_intron ENSMUSG00000028745 Capzb ENSMUST00000145368 ENSMUSP00000119252 TRANSLATION protein_coding stop - 5 109.0 0.0 2.83 1.0 169.2 0.0 -4,-5 0.0057 7 -2.0 MINOR ENSMUSG00000028745 Capzb ENSMUST00000150077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028745 Capzb ENSMUST00000102508 ENSMUSP00000099566 TRANSLATION protein_coding - CCDS18841.1 1 272.0 0.0 7.58 24.7 369.8 0.0 -4,-5 0.9801 20 11.502 PRINCIPAL:3 ENSMUSG00000028745 Capzb ENSMUST00000102507 ENSMUSP00000099565 TRANSLATION protein_coding - CCDS18842.1 1 277.0 0.0 7.83 23.7 369.8 0.0 -4,-5 1.0 18 11.832 ALTERNATIVE:1 ENSMUSG00000108398 Gm30191 ENSMUST00000205501 ENSMUSP00000145697 TRANSLATION protein_coding - - 5 187.0 0.0 0.0 3.0 0.0 0.0 -4,-6 0.6284 - 1.0 PRINCIPAL:1 ENSMUSG00000042388 Dlgap3 ENSMUST00000137062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042388 Dlgap3 ENSMUST00000106092 ENSMUSP00000101698 TRANSLATION protein_coding - - 5 966.0 0.0 2.0 0.1 466.8 0.0 -4,-2 0.0948 22 9.126 MINOR ENSMUSG00000042388 Dlgap3 ENSMUST00000106094 ENSMUSP00000101700 TRANSLATION protein_coding - CCDS18665.1 1 977.0 0.0 2.33 8.8 500.5 0.0 -4,-2 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000042388 Dlgap3 ENSMUST00000046659 ENSMUSP00000039724 TRANSLATION protein_coding - CCDS18665.1 1 977.0 0.0 2.33 8.8 500.5 0.0 -4,-2 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000037600 Kdf1 ENSMUST00000042919 ENSMUSP00000048768 TRANSLATION protein_coding - CCDS38905.1 1 397.0 0.0 1.6 11.0 592.8 0.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000037600 Kdf1 ENSMUST00000105901 ENSMUSP00000101521 TRANSLATION protein_coding - CCDS38905.1 1 397.0 0.0 1.6 11.0 592.8 0.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000037600 Kdf1 ENSMUST00000153811 ENSMUSP00000122170 TRANSLATION protein_coding stop - 2 172.0 0.0 0.0 0.0 181.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000037600 Kdf1 ENSMUST00000149807 ENSMUSP00000119014 TRANSLATION protein_coding stop - 2 265.0 0.0 0.6 0.0 338.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000037600 Kdf1 ENSMUST00000121797 ENSMUSP00000113590 TRANSLATION protein_coding - - 2 375.0 0.0 1.6 0.0 537.5 0.0 -4,-6 0.0431 3 8.682 MINOR ENSMUSG00000003032 Klf4 ENSMUST00000129250 ENSMUSP00000116514 TRANSLATION protein_coding stop - 2 160.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000003032 Klf4 ENSMUST00000132746 ENSMUSP00000123687 TRANSLATION protein_coding stop - 3 82.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000003032 Klf4 ENSMUST00000107619 ENSMUSP00000103245 TRANSLATION protein_coding - CCDS18195.2 1 483.0 12.0 2.0 7.4 69.4 0.0 -4,-6 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000028811 Yars ENSMUST00000133992 ENSMUSP00000118512 TRANSLATION nonsense_mediated_decay start - 5 129.0 2.0 1.04 0.0 32.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028811 Yars ENSMUST00000137591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028811 Yars ENSMUST00000106054 ENSMUSP00000101669 TRANSLATION protein_coding - - 1 528.0 19.0 12.05 25.2 368.4 0.0 -4,-5 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000028811 Yars ENSMUST00000128287 - NO_TRANSLATION retained_intron ENSMUSG00000028811 Yars ENSMUST00000147248 - NO_TRANSLATION retained_intron ENSMUSG00000028811 Yars ENSMUST00000140708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028811 Yars ENSMUST00000148619 - NO_TRANSLATION retained_intron ENSMUSG00000028811 Yars ENSMUST00000146106 - NO_TRANSLATION retained_intron ENSMUSG00000036921 Tex46 ENSMUST00000046647 ENSMUSP00000038976 TRANSLATION protein_coding - CCDS18808.1 1 165.0 0.0 0.0 5.0 0.0 0.0 -3,-5 0.956 1 2.0 PRINCIPAL:1 ENSMUSG00000028937 Acot7 ENSMUST00000030779 ENSMUSP00000030779 TRANSLATION protein_coding - - 1 381.0 34.0 7.75 4.0 113.0 0.0 -4,-2 0.9048 11 15.85 ALTERNATIVE:2 ENSMUSG00000028937 Acot7 ENSMUST00000167926 ENSMUSP00000129121 TRANSLATION protein_coding - CCDS51391.1 1 384.0 34.0 7.75 4.0 113.0 0.0 -3,-2 1.0 11 15.85 ALTERNATIVE:2 ENSMUSG00000028937 Acot7 ENSMUST00000144733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028937 Acot7 ENSMUST00000075363 ENSMUSP00000074827 TRANSLATION protein_coding - CCDS51390.1 1 379.0 34.0 7.816 3.5 113.0 0.0 -4,-7 0.9663 13 15.648 PRINCIPAL:3 ENSMUSG00000028937 Acot7 ENSMUST00000124548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028937 Acot7 ENSMUST00000105652 ENSMUSP00000101277 TRANSLATION protein_coding - CCDS51392.1 1 350.0 34.0 7.825 2.8 113.0 0.0 -4,-1 0.7484 11 15.2 ALTERNATIVE:2 ENSMUSG00000041058 Wwp1 ENSMUST00000108246 ENSMUSP00000103881 TRANSLATION protein_coding - CCDS38697.1 1 918.0 0.0 16.95 9.9 554.6 0.0 -4,-7 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000041058 Wwp1 ENSMUST00000035982 ENSMUSP00000041627 TRANSLATION protein_coding - CCDS38697.1 5 918.0 0.0 16.95 9.9 554.6 0.0 -4,-7 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000028907 Utp11 ENSMUST00000153088 - NO_TRANSLATION retained_intron ENSMUSG00000028907 Utp11 ENSMUST00000030738 ENSMUSP00000030738 TRANSLATION protein_coding - CCDS18623.1 1 253.0 0.0 6.875 27.7 246.6 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000066036 Ubr4 ENSMUST00000097822 ENSMUSP00000095433 TRANSLATION protein_coding - CCDS51340.1 5 5180.0 8.0 0.798 3.6 1149.5 0.0 -4,-5 1.0 115 15.0 PRINCIPAL:2 ENSMUSG00000066036 Ubr4 ENSMUST00000145273 - NO_TRANSLATION retained_intron ENSMUSG00000066036 Ubr4 ENSMUST00000129949 ENSMUSP00000115711 TRANSLATION protein_coding start/stop - 1 2065.0 4.0 0.798 0.0 29.8 0.0 -4,-7 0.1063 35 -2.0 MINOR ENSMUSG00000066036 Ubr4 ENSMUST00000135534 - NO_TRANSLATION retained_intron ENSMUSG00000066036 Ubr4 ENSMUST00000136230 - NO_TRANSLATION retained_intron ENSMUSG00000066036 Ubr4 ENSMUST00000141327 - NO_TRANSLATION retained_intron ENSMUSG00000066036 Ubr4 ENSMUST00000129779 ENSMUSP00000114947 TRANSLATION protein_coding start/stop - 2 204.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000066036 Ubr4 ENSMUST00000147999 ENSMUSP00000117419 TRANSLATION protein_coding stop - 2 1301.0 4.0 0.0 0.0 195.4 0.0 -4,-7 0.0189 42 -2.0 MINOR ENSMUSG00000066036 Ubr4 ENSMUST00000149995 - NO_TRANSLATION retained_intron ENSMUSG00000066036 Ubr4 ENSMUST00000133220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066036 Ubr4 ENSMUST00000165860 ENSMUSP00000125800 TRANSLATION protein_coding - - 5 5156.0 8.0 0.798 0.0 1149.5 0.0 -4,-5 0.4021 115 14.0 ALTERNATIVE:2 ENSMUSG00000066036 Ubr4 ENSMUST00000145659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000099518 Gm13275 ENSMUST00000178347 ENSMUSP00000137245 TRANSLATION protein_coding - CCDS38807.1 - 182.0 0.0 0.4 0.0 94.5 0.0 1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035969 Rusc2 ENSMUST00000149221 ENSMUSP00000134247 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0265 - -2.0 MINOR ENSMUSG00000035969 Rusc2 ENSMUST00000136360 ENSMUSP00000123431 TRANSLATION protein_coding stop - 2 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035969 Rusc2 ENSMUST00000035645 ENSMUSP00000038379 TRANSLATION protein_coding - CCDS18092.1 1 1523.0 0.0 4.75 0.1 106.1 0.0 -4,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000035969 Rusc2 ENSMUST00000125399 ENSMUSP00000116700 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0265 - -2.0 MINOR ENSMUSG00000035969 Rusc2 ENSMUST00000135216 ENSMUSP00000115081 TRANSLATION protein_coding stop - 2 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035969 Rusc2 ENSMUST00000152322 ENSMUSP00000121298 TRANSLATION protein_coding stop - 3 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0148 - -2.0 MINOR ENSMUSG00000035969 Rusc2 ENSMUST00000154754 - NO_TRANSLATION retained_intron ENSMUSG00000035969 Rusc2 ENSMUST00000146710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035969 Rusc2 ENSMUST00000144911 ENSMUSP00000121762 TRANSLATION protein_coding stop - 2 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035969 Rusc2 ENSMUST00000131037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035969 Rusc2 ENSMUST00000123447 - NO_TRANSLATION retained_intron ENSMUSG00000035969 Rusc2 ENSMUST00000131668 ENSMUSP00000118528 TRANSLATION protein_coding - - 5 1462.0 0.0 4.15 0.0 75.2 0.0 -4,-5 0.0571 14 8.946 MINOR ENSMUSG00000035969 Rusc2 ENSMUST00000125393 - NO_TRANSLATION retained_intron ENSMUSG00000035969 Rusc2 ENSMUST00000149556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035969 Rusc2 ENSMUST00000139198 ENSMUSP00000121528 TRANSLATION protein_coding stop - 2 161.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035969 Rusc2 ENSMUST00000098106 ENSMUSP00000095710 TRANSLATION protein_coding - CCDS18092.1 1 1523.0 0.0 4.75 0.1 106.1 0.0 -4,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000035969 Rusc2 ENSMUST00000173682 ENSMUSP00000133715 TRANSLATION nonsense_mediated_decay - - 5 803.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0094 4 -2.0 MINOR ENSMUSG00000035969 Rusc2 ENSMUST00000150066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045083 Lingo2 ENSMUST00000125128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045083 Lingo2 ENSMUST00000065173 ENSMUSP00000069772 TRANSLATION protein_coding - CCDS18040.1 1 606.0 0.0 1.0 22.7 180.2 1.0 2,-3 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000045083 Lingo2 ENSMUST00000164772 ENSMUSP00000130423 TRANSLATION protein_coding - CCDS18040.1 1 606.0 0.0 1.0 22.7 180.2 1.0 2,-3 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000045083 Lingo2 ENSMUST00000124999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045083 Lingo2 ENSMUST00000144170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045083 Lingo2 ENSMUST00000127372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045083 Lingo2 ENSMUST00000108124 ENSMUSP00000103759 TRANSLATION protein_coding - CCDS18040.1 1 606.0 0.0 1.0 22.7 180.2 1.0 2,-3 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000045083 Lingo2 ENSMUST00000145615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045083 Lingo2 ENSMUST00000108122 ENSMUSP00000103757 TRANSLATION protein_coding - CCDS18040.1 1 606.0 0.0 1.0 22.7 180.2 1.0 2,-3 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000045083 Lingo2 ENSMUST00000098151 ENSMUSP00000095754 TRANSLATION protein_coding - CCDS18040.1 5 606.0 0.0 1.0 22.7 180.2 1.0 2,-3 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028282 Casp8ap2 ENSMUST00000178925 ENSMUSP00000136016 TRANSLATION protein_coding - CCDS18016.1 5 1962.0 0.0 4.25 0.1 0.0 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:2 ENSMUSG00000028282 Casp8ap2 ENSMUST00000108178 ENSMUSP00000103813 TRANSLATION protein_coding - - 5 190.0 0.0 4.25 0.0 0.0 0.0 -4,-5 0.0527 - 6.0 ALTERNATIVE:2 ENSMUSG00000028282 Casp8ap2 ENSMUST00000124278 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028282 Casp8ap2 ENSMUST00000127619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028282 Casp8ap2 ENSMUST00000029950 ENSMUSP00000029950 TRANSLATION protein_coding - CCDS18016.1 1 1962.0 0.0 4.25 0.1 0.0 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:2 ENSMUSG00000035601 Trmt10b ENSMUST00000142785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035601 Trmt10b ENSMUST00000126972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035601 Trmt10b ENSMUST00000145756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035601 Trmt10b ENSMUST00000141659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035601 Trmt10b ENSMUST00000107800 ENSMUSP00000103429 TRANSLATION protein_coding - - 5 316.0 15.0 5.75 11.0 152.7 0.0 -4,-5 0.8121 - 17.0 ALTERNATIVE:1 ENSMUSG00000035601 Trmt10b ENSMUST00000144781 ENSMUSP00000114832 TRANSLATION protein_coding stop - 3 141.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035601 Trmt10b ENSMUST00000044673 ENSMUSP00000041052 TRANSLATION protein_coding - CCDS18135.1 1 318.0 15.0 5.75 11.0 152.7 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:4 ENSMUSG00000028940 Hes2 ENSMUST00000138991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028940 Hes2 ENSMUST00000030782 ENSMUSP00000030782 TRANSLATION protein_coding - CCDS18995.1 1 157.0 0.0 2.25 1.1 81.8 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000095498 Ifna1 ENSMUST00000094972 ENSMUSP00000092580 TRANSLATION protein_coding - CCDS18347.1 - 189.0 3.0 1.0 5.3 211.3 0.0 4,-1 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000028788 Ptp4a2 ENSMUST00000127558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028788 Ptp4a2 ENSMUST00000030578 ENSMUSP00000030578 TRANSLATION protein_coding - CCDS18704.1 5 167.0 10.0 4.75 36.9 31.5 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000028788 Ptp4a2 ENSMUST00000141754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028788 Ptp4a2 ENSMUST00000165853 ENSMUSP00000125901 TRANSLATION protein_coding - CCDS18704.1 5 167.0 10.0 4.75 36.9 31.5 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000028788 Ptp4a2 ENSMUST00000133662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028788 Ptp4a2 ENSMUST00000132411 - NO_TRANSLATION retained_intron ENSMUSG00000028788 Ptp4a2 ENSMUST00000132386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014592 Camta1 ENSMUST00000153938 ENSMUSP00000134684 TRANSLATION nonsense_mediated_decay - CCDS57315.1 1 80.0 0.0 0.0 4.6 0.0 0.0 -4,-7 0.5948 - -2.0 MINOR ENSMUSG00000014592 Camta1 ENSMUST00000131948 ENSMUSP00000118969 TRANSLATION protein_coding stop - 2 75.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014592 Camta1 ENSMUST00000135780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014592 Camta1 ENSMUST00000097774 ENSMUSP00000095381 TRANSLATION protein_coding - - 5 1675.0 0.0 4.3225 2.3 205.2 0.0 -4,-7 0.9047 10 8.722 ALTERNATIVE:2 ENSMUSG00000014592 Camta1 ENSMUST00000105670 ENSMUSP00000101295 TRANSLATION protein_coding - - 1 584.0 0.0 2.3225 3.8 22.6 0.0 -4,-5 0.4276 7 4.354 MINOR ENSMUSG00000014592 Camta1 ENSMUST00000155685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014592 Camta1 ENSMUST00000185034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014592 Camta1 ENSMUST00000105668 ENSMUSP00000101293 TRANSLATION protein_coding - - 1 591.0 0.0 2.3225 2.7 22.6 0.0 -4,-5 0.2699 7 3.742 MINOR ENSMUSG00000014592 Camta1 ENSMUST00000143434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014592 Camta1 ENSMUST00000140030 ENSMUSP00000119067 TRANSLATION protein_coding start - 5 238.0 0.0 1.095 0.0 22.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000014592 Camta1 ENSMUST00000049790 ENSMUSP00000054804 TRANSLATION protein_coding - CCDS38981.1 5 1682.0 0.0 4.3225 2.3 205.2 0.0 -4,-7 1.0 10 8.722 PRINCIPAL:4 ENSMUSG00000028699 Tspan1 ENSMUST00000030465 ENSMUSP00000030465 TRANSLATION protein_coding - CCDS18508.1 1 240.0 0.0 2.938 26.0 172.9 4.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028699 Tspan1 ENSMUST00000154534 - NO_TRANSLATION retained_intron ENSMUSG00000028699 Tspan1 ENSMUST00000143426 ENSMUSP00000121906 TRANSLATION protein_coding stop - 3 224.0 0.0 2.538 1.2 162.1 3.0 -1,-5 0.0498 - -2.0 MINOR ENSMUSG00000012123 Crybg2 ENSMUST00000149080 - NO_TRANSLATION retained_intron ENSMUSG00000012123 Crybg2 ENSMUST00000140125 - NO_TRANSLATION retained_intron ENSMUSG00000012123 Crybg2 ENSMUST00000149504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012123 Crybg2 ENSMUST00000153392 - NO_TRANSLATION retained_intron ENSMUSG00000012123 Crybg2 ENSMUST00000137529 - NO_TRANSLATION retained_intron ENSMUSG00000012123 Crybg2 ENSMUST00000143295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012123 Crybg2 ENSMUST00000121391 ENSMUSP00000114099 TRANSLATION protein_coding - CCDS51323.1 1 1516.0 8.0 7.9572 0.0 420.2 0.0 -4,-7 1.0 25 14.0 PRINCIPAL:2 ENSMUSG00000012123 Crybg2 ENSMUST00000227683 ENSMUSP00000154159 TRANSLATION protein_coding - - - 1825.0 8.0 7.9572 0.0 420.2 0.0 -4,-2 0.3608 25 14.0 ALTERNATIVE:2 ENSMUSG00000012123 Crybg2 ENSMUST00000149956 ENSMUSP00000123349 TRANSLATION protein_coding start/stop - 5 293.0 0.0 5.0132 0.0 261.3 0.0 -4,-7 0.0005 3 -2.0 MINOR ENSMUSG00000012123 Crybg2 ENSMUST00000137053 ENSMUSP00000122303 TRANSLATION protein_coding stop - 3 89.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000012123 Crybg2 ENSMUST00000146102 - NO_TRANSLATION retained_intron ENSMUSG00000012123 Crybg2 ENSMUST00000219402 ENSMUSP00000152001 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000012123 Crybg2 ENSMUST00000132872 - NO_TRANSLATION retained_intron ENSMUSG00000070821 Or13p8 ENSMUST00000216242 ENSMUSP00000149224 TRANSLATION protein_coding - CCDS18558.1 3 315.0 0.0 1.0 10.1 192.0 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070821 Or13p8 ENSMUST00000217334 ENSMUSP00000149563 TRANSLATION protein_coding - CCDS18558.1 3 315.0 0.0 1.0 10.1 192.0 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070821 Or13p8 ENSMUST00000094834 ENSMUSP00000092430 TRANSLATION protein_coding - CCDS18558.1 - 315.0 0.0 1.0 10.1 192.0 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070821 Or13p8 ENSMUST00000213436 ENSMUSP00000150483 TRANSLATION protein_coding - CCDS18558.1 5 315.0 0.0 1.0 10.1 192.0 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038709 Txndc8 ENSMUST00000102897 ENSMUSP00000099961 TRANSLATION protein_coding - - 1 127.0 6.0 3.4675 5.9 82.0 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000038709 Txndc8 ENSMUST00000154540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038709 Txndc8 ENSMUST00000139256 ENSMUSP00000117634 TRANSLATION protein_coding start - 3 42.0 1.0 1.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038709 Txndc8 ENSMUST00000239406 ENSMUSP00000159291 TRANSLATION protein_coding - CCDS18208.1 - 153.0 6.0 3.4675 0.0 82.0 0.0 -4,-7 0.1307 2 18.0 MINOR ENSMUSG00000028488 Sh3gl2 ENSMUST00000107188 ENSMUSP00000102806 TRANSLATION protein_coding - - 1 431.0 0.0 6.88 0.0 301.9 0.0 -4,-6 0.0046 10 9.126 MINOR ENSMUSG00000028488 Sh3gl2 ENSMUST00000107184 ENSMUSP00000102802 TRANSLATION protein_coding - - 2 182.0 0.0 3.8 0.0 163.4 0.0 -4,-6 0.0 8 0.0 MINOR ENSMUSG00000028488 Sh3gl2 ENSMUST00000030212 ENSMUSP00000030212 TRANSLATION protein_coding - CCDS18303.1 1 352.0 0.0 7.63 31.5 324.8 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000028488 Sh3gl2 ENSMUST00000107189 ENSMUSP00000102807 TRANSLATION protein_coding - - 1 245.0 0.0 5.8 0.0 272.1 0.0 -4,-6 0.023 9 5.178 MINOR ENSMUSG00000028488 Sh3gl2 ENSMUST00000133109 ENSMUSP00000117573 TRANSLATION protein_coding start - 3 231.0 0.0 4.0 0.0 183.9 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000040455 Usp45 ENSMUST00000148647 ENSMUSP00000128859 TRANSLATION nonsense_mediated_decay start - 5 153.0 0.0 1.4825 0.0 27.6 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000040455 Usp45 ENSMUST00000156589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040455 Usp45 ENSMUST00000148304 ENSMUSP00000127194 TRANSLATION protein_coding stop - 3 257.0 12.0 2.707 0.0 64.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040455 Usp45 ENSMUST00000137293 ENSMUSP00000125982 TRANSLATION nonsense_mediated_decay start - 5 210.0 12.0 2.607 0.0 64.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000040455 Usp45 ENSMUST00000125262 - NO_TRANSLATION retained_intron ENSMUSG00000040455 Usp45 ENSMUST00000065111 ENSMUSP00000067109 TRANSLATION protein_coding - CCDS38700.1 5 813.0 12.0 7.0645 6.3 217.4 0.0 -4,-5 1.0 8 19.964 PRINCIPAL:1 ENSMUSG00000040455 Usp45 ENSMUST00000040429 ENSMUSP00000048324 TRANSLATION protein_coding - CCDS71351.1 1 765.0 12.0 7.0645 0.1 218.0 0.0 -4,-5 0.2552 8 18.0 MINOR ENSMUSG00000040455 Usp45 ENSMUST00000108232 ENSMUSP00000103867 TRANSLATION nonsense_mediated_decay - CCDS38700.1 1 813.0 12.0 7.0645 6.3 217.4 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000028587 Orc1 ENSMUST00000139772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028587 Orc1 ENSMUST00000143497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028587 Orc1 ENSMUST00000102744 ENSMUSP00000099805 TRANSLATION protein_coding - CCDS18453.1 1 840.0 15.0 11.05 0.0 166.6 0.0 -4,-1 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000028587 Orc1 ENSMUST00000130162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028587 Orc1 ENSMUST00000129931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070999 Ccin ENSMUST00000095107 ENSMUSP00000092725 TRANSLATION protein_coding - CCDS18118.1 - 588.0 0.0 0.32 12.5 184.0 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000057637 Prdm2 ENSMUST00000105778 ENSMUSP00000101404 TRANSLATION protein_coding - CCDS38942.2 5 1709.0 27.0 4.08 0.1 101.0 0.0 -4,-5 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000057637 Prdm2 ENSMUST00000134791 ENSMUSP00000116458 TRANSLATION protein_coding stop - 1 152.0 0.0 3.75 0.0 38.5 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000057637 Prdm2 ENSMUST00000156909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057637 Prdm2 ENSMUST00000154280 ENSMUSP00000117741 TRANSLATION protein_coding stop - 5 169.0 0.0 4.08 0.0 38.5 0.0 -4,-5 0.0413 - -2.0 MINOR ENSMUSG00000040044 Orc3 ENSMUST00000141529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040044 Orc3 ENSMUST00000150116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040044 Orc3 ENSMUST00000140334 ENSMUSP00000119335 TRANSLATION protein_coding stop - 5 277.0 0.0 4.73 0.0 360.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040044 Orc3 ENSMUST00000145619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040044 Orc3 ENSMUST00000156987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040044 Orc3 ENSMUST00000108142 ENSMUSP00000103777 TRANSLATION protein_coding - CCDS51137.1 1 714.0 0.0 13.455 0.0 423.3 0.0 -4,-2 0.8937 8 7.628 ALTERNATIVE:2 ENSMUSG00000040044 Orc3 ENSMUST00000132918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040044 Orc3 ENSMUST00000154858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040044 Orc3 ENSMUST00000048706 ENSMUSP00000048319 TRANSLATION protein_coding - CCDS18028.1 1 715.0 0.0 13.6425 0.0 423.3 0.0 -4,-2 1.0 8 8.0 PRINCIPAL:4 ENSMUSG00000040044 Orc3 ENSMUST00000133107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040044 Orc3 ENSMUST00000125218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095234 Gm21586 ENSMUST00000238328 ENSMUSP00000158759 TRANSLATION protein_coding - CCDS57273.1 - 87.0 0.0 1.25 6.4 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000095234 Gm21586 ENSMUST00000107988 ENSMUSP00000103622 TRANSLATION protein_coding - CCDS57273.1 1 87.0 0.0 1.25 6.4 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000057021 Vmn2r129 ENSMUST00000074107 ENSMUSP00000157509 TRANSLATION protein_coding - - 1 436.0 0.0 0.9 0.1 126.5 0.0 4,-1 0.0008 - 2.052 MINOR ENSMUSG00000057021 Vmn2r129 ENSMUST00000096792 ENSMUSP00000157307 TRANSLATION protein_coding - - - 850.0 4.0 2.63 0.4 398.1 0.0 4,-1 0.9036 - 16.0 PRINCIPAL:1 ENSMUSG00000057021 Vmn2r129 ENSMUST00000189559 ENSMUSP00000158497 TRANSLATION nonsense_mediated_decay - - 1 90.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0021 - -2.0 MINOR ENSMUSG00000041135 Ripk2 ENSMUST00000183871 ENSMUSP00000139381 TRANSLATION nonsense_mediated_decay - - 1 315.0 0.0 5.5 0.0 153.7 0.0 -4,-5 0.001 4 -2.0 MINOR ENSMUSG00000041135 Ripk2 ENSMUST00000037035 ENSMUSP00000038833 TRANSLATION protein_coding - CCDS17988.1 1 539.0 0.0 6.5 7.7 221.1 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000042228 Lyn ENSMUST00000041377 ENSMUSP00000038838 TRANSLATION protein_coding - CCDS51109.1 1 512.0 17.0 9.75 30.9 461.8 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:4 ENSMUSG00000042228 Lyn ENSMUST00000145083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042228 Lyn ENSMUST00000137943 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042228 Lyn ENSMUST00000103010 ENSMUSP00000100075 TRANSLATION protein_coding - CCDS17939.1 1 491.0 17.0 9.75 23.4 461.8 0.0 -4,-5 0.9435 13 16.996 ALTERNATIVE:1 ENSMUSG00000029009 Mthfr ENSMUST00000156113 ENSMUSP00000116840 TRANSLATION nonsense_mediated_decay start - 1 152.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029009 Mthfr ENSMUST00000069604 ENSMUSP00000069774 TRANSLATION protein_coding - CCDS51376.1 1 695.0 23.0 2.76 5.0 393.9 0.0 -4,-7 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000029009 Mthfr ENSMUST00000141283 ENSMUSP00000116239 TRANSLATION protein_coding stop - 3 194.0 12.0 1.16 0.0 182.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000029009 Mthfr ENSMUST00000145115 - NO_TRANSLATION retained_intron ENSMUSG00000029009 Mthfr ENSMUST00000152498 ENSMUSP00000117095 TRANSLATION nonsense_mediated_decay start - 1 670.0 23.0 2.76 0.0 393.9 0.0 -4,-7 0.0838 10 -2.0 MINOR ENSMUSG00000029009 Mthfr ENSMUST00000125978 - NO_TRANSLATION retained_intron ENSMUSG00000029009 Mthfr ENSMUST00000097788 ENSMUSP00000095395 TRANSLATION protein_coding - CCDS18929.1 1 654.0 23.0 2.76 0.0 393.9 0.0 -4,-6 0.1532 9 18.0 MINOR ENSMUSG00000060572 Mfap2 ENSMUST00000166376 ENSMUSP00000132711 TRANSLATION protein_coding - - 2 183.0 0.0 2.5 8.9 147.1 0.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000060572 Mfap2 ENSMUST00000071977 ENSMUSP00000071868 TRANSLATION protein_coding - - 1 183.0 0.0 2.5 8.9 147.1 0.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000060572 Mfap2 ENSMUST00000124506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028214 Gem ENSMUST00000108304 ENSMUSP00000103939 TRANSLATION protein_coding - CCDS17971.1 1 295.0 14.0 3.35 21.6 108.0 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000028214 Gem ENSMUST00000029868 ENSMUSP00000029868 TRANSLATION protein_coding - CCDS17971.1 2 295.0 14.0 3.35 21.6 108.0 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000039196 Orm1 ENSMUST00000030044 ENSMUSP00000030044 TRANSLATION protein_coding - CCDS18251.1 1 207.0 0.0 5.0 0.0 68.6 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000036896 C1qc ENSMUST00000153104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036896 C1qc ENSMUST00000046332 ENSMUSP00000036747 TRANSLATION protein_coding - CCDS18811.1 1 246.0 0.0 1.0 0.4 164.3 0.0 3,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000028797 Tmem234 ENSMUST00000151969 ENSMUSP00000120878 TRANSLATION nonsense_mediated_decay - - 3 70.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.002 - -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000137090 ENSMUSP00000117568 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.002 - -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000173937 ENSMUSP00000133412 TRANSLATION nonsense_mediated_decay - - 2 70.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.002 - -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000173758 ENSMUSP00000134588 TRANSLATION protein_coding - - 2 131.0 0.0 3.25 0.4 104.7 3.0 3,-2 0.0267 2 8.85 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000152126 ENSMUSP00000120224 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.002 - -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000181579 ENSMUSP00000137989 TRANSLATION protein_coding stop - 2 138.0 0.0 3.58 7.6 136.9 1.0 3,-2 0.7569 2 -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000145345 ENSMUSP00000122893 TRANSLATION nonsense_mediated_decay start - 3 60.0 0.0 1.0 0.0 41.3 0.0 3,-3 0.002 2 -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000127919 ENSMUSP00000123153 TRANSLATION nonsense_mediated_decay - - 3 70.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.002 - -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000129515 ENSMUSP00000117184 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.002 - -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000174350 - NO_TRANSLATION retained_intron ENSMUSG00000028797 Tmem234 ENSMUST00000144304 - NO_TRANSLATION retained_intron ENSMUSG00000028797 Tmem234 ENSMUST00000102591 ENSMUSP00000099651 TRANSLATION protein_coding - CCDS18699.1 1 140.0 0.0 3.58 7.6 146.2 3.0 3,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000028797 Tmem234 ENSMUST00000135628 ENSMUSP00000120682 TRANSLATION nonsense_mediated_decay - - 2 70.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.002 - -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000174610 ENSMUSP00000134104 TRANSLATION nonsense_mediated_decay start - 5 65.0 0.0 1.0 0.0 41.8 0.0 3,-3 0.002 2 -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000172774 ENSMUSP00000133502 TRANSLATION nonsense_mediated_decay - - 3 70.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.002 2 -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000174819 ENSMUSP00000133695 TRANSLATION nonsense_mediated_decay - - 2 57.0 0.0 1.0 0.0 41.3 0.0 3,-2 0.002 2 -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000172635 - NO_TRANSLATION retained_intron ENSMUSG00000028797 Tmem234 ENSMUST00000173507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028797 Tmem234 ENSMUST00000150110 ENSMUSP00000122513 TRANSLATION nonsense_mediated_decay - - 3 61.0 0.0 1.0 0.0 41.3 0.0 3,-2 0.002 2 -2.0 MINOR ENSMUSG00000028797 Tmem234 ENSMUST00000173728 - NO_TRANSLATION retained_intron ENSMUSG00000028797 Tmem234 ENSMUST00000174073 ENSMUSP00000133325 TRANSLATION nonsense_mediated_decay - - 5 70.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.002 - -2.0 MINOR ENSMUSG00000037996 Slc24a2 ENSMUST00000146815 ENSMUSP00000119537 TRANSLATION protein_coding start/stop - 3 168.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037996 Slc24a2 ENSMUST00000134248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037996 Slc24a2 ENSMUST00000140780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037996 Slc24a2 ENSMUST00000107155 ENSMUSP00000102773 TRANSLATION protein_coding - - 5 645.0 0.0 1.0 7.1 214.3 8.0 -4,-7 0.6952 2 10.232 ALTERNATIVE:1 ENSMUSG00000037996 Slc24a2 ENSMUST00000044990 ENSMUSP00000043937 TRANSLATION protein_coding - - 5 662.0 0.0 1.0 8.3 214.3 8.0 -4,-7 0.7874 1 10.67 ALTERNATIVE:1 ENSMUSG00000037996 Slc24a2 ENSMUST00000155361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037996 Slc24a2 ENSMUST00000107158 ENSMUSP00000102776 TRANSLATION protein_coding - CCDS51220.1 1 711.0 0.0 1.0 0.0 214.3 8.0 -4,-7 0.326 5 8.0 MINOR ENSMUSG00000037996 Slc24a2 ENSMUST00000107157 ENSMUSP00000102775 TRANSLATION protein_coding - CCDS18312.1 1 666.0 0.0 1.0 9.2 214.3 8.0 -4,-7 1.0 1 11.0 PRINCIPAL:4 ENSMUSG00000037996 Slc24a2 ENSMUST00000134643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028441 1110017D15Rik ENSMUST00000134546 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028441 1110017D15Rik ENSMUST00000030152 ENSMUSP00000030152 TRANSLATION protein_coding - CCDS38717.1 5 260.0 0.0 0.0 6.2 510.7 0.0 -4,-2 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000028441 1110017D15Rik ENSMUST00000138217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028441 1110017D15Rik ENSMUST00000124019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028441 1110017D15Rik ENSMUST00000123865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028441 1110017D15Rik ENSMUST00000123356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028441 1110017D15Rik ENSMUST00000125303 ENSMUSP00000122537 TRANSLATION protein_coding start - 3 215.0 0.0 0.0 0.0 279.8 0.0 -4,-5 0.0012 4 -2.0 MINOR ENSMUSG00000028441 1110017D15Rik ENSMUST00000095126 ENSMUSP00000092744 TRANSLATION protein_coding - CCDS57265.1 3 202.0 0.0 0.0 0.0 299.8 0.0 -4,-2 0.0272 3 0.0 MINOR ENSMUSG00000028931 Kcnab2 ENSMUST00000162017 ENSMUSP00000123939 TRANSLATION protein_coding stop - 5 38.0 0.0 0.15 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000028931 Kcnab2 ENSMUST00000159840 ENSMUSP00000124156 TRANSLATION protein_coding - CCDS57316.1 1 353.0 33.0 9.23 27.4 248.4 0.0 -4,-2 0.9312 11 16.368 ALTERNATIVE:1 ENSMUSG00000028931 Kcnab2 ENSMUST00000160884 ENSMUSP00000125058 TRANSLATION protein_coding - CCDS19000.1 1 367.0 33.0 9.53 30.6 248.4 0.0 -4,-6 1.0 11 17.4 PRINCIPAL:4 ENSMUSG00000028931 Kcnab2 ENSMUST00000161496 ENSMUSP00000158599 TRANSLATION protein_coding stop - 5 56.0 4.0 1.75 0.0 50.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028931 Kcnab2 ENSMUST00000162200 - NO_TRANSLATION retained_intron ENSMUSG00000028931 Kcnab2 ENSMUST00000159488 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028931 Kcnab2 ENSMUST00000105648 ENSMUSP00000101273 TRANSLATION protein_coding - CCDS19000.1 1 367.0 33.0 9.53 30.6 248.4 0.0 -4,-6 1.0 11 17.4 PRINCIPAL:4 ENSMUSG00000028931 Kcnab2 ENSMUST00000161236 ENSMUSP00000125270 TRANSLATION protein_coding stop - 3 134.0 9.0 3.53 0.0 66.4 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000028931 Kcnab2 ENSMUST00000161844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028931 Kcnab2 ENSMUST00000162165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028931 Kcnab2 ENSMUST00000159844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028931 Kcnab2 ENSMUST00000159435 ENSMUSP00000158609 TRANSLATION protein_coding stop - 3 51.0 4.0 1.75 0.0 48.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028931 Kcnab2 ENSMUST00000238252 ENSMUSP00000158771 TRANSLATION protein_coding - - - 398.0 33.0 9.08 19.4 248.4 0.0 -4,-6 0.6964 10 14.988 MINOR ENSMUSG00000028931 Kcnab2 ENSMUST00000159186 ENSMUSP00000124588 TRANSLATION protein_coding - - 5 300.0 29.0 8.08 5.9 234.1 0.0 -4,-5 0.148 9 6.502 MINOR ENSMUSG00000028931 Kcnab2 ENSMUST00000030768 ENSMUSP00000030768 TRANSLATION protein_coding - CCDS57316.1 1 353.0 33.0 9.23 27.4 248.4 0.0 -4,-2 0.9312 11 16.368 ALTERNATIVE:1 ENSMUSG00000028931 Kcnab2 ENSMUST00000238738 ENSMUSP00000158843 TRANSLATION protein_coding - - - 382.0 33.0 9.83 18.5 242.8 0.0 -4,-6 0.7349 11 14.364 MINOR ENSMUSG00000028931 Kcnab2 ENSMUST00000238715 ENSMUSP00000158839 TRANSLATION protein_coding - - - 415.0 33.0 9.58 1.7 242.8 0.0 -4,-2 0.1227 10 11.598 MINOR ENSMUSG00000028931 Kcnab2 ENSMUST00000162518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070867 Trabd2b ENSMUST00000094894 ENSMUSP00000092494 TRANSLATION protein_coding - CCDS38843.1 5 517.0 0.0 4.0 2.9 216.8 0.0 2,-3 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000029075 Tnfrsf4 ENSMUST00000127377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029075 Tnfrsf4 ENSMUST00000030952 ENSMUSP00000030952 TRANSLATION protein_coding - CCDS19055.1 1 272.0 0.0 4.548 0.4 56.5 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029075 Tnfrsf4 ENSMUST00000143576 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037348 Paqr7 ENSMUST00000136171 ENSMUSP00000122936 TRANSLATION protein_coding stop - 1 237.0 0.0 2.75 0.0 110.3 6.0 -4,-7 0.0034 1 -2.0 MINOR ENSMUSG00000037348 Paqr7 ENSMUST00000125330 ENSMUSP00000116485 TRANSLATION protein_coding stop - 1 147.0 0.0 1.5 0.0 61.3 2.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000037348 Paqr7 ENSMUST00000081525 ENSMUSP00000080240 TRANSLATION protein_coding - CCDS18773.1 1 345.0 0.0 3.75 22.5 167.4 8.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000037348 Paqr7 ENSMUST00000155449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037348 Paqr7 ENSMUST00000134506 ENSMUSP00000120959 TRANSLATION protein_coding stop - 3 127.0 0.0 1.0 0.0 41.8 2.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000037348 Paqr7 ENSMUST00000095074 ENSMUSP00000125932 TRANSLATION protein_coding - CCDS18773.1 1 345.0 0.0 3.75 22.5 167.4 8.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028671 Gale ENSMUST00000143304 ENSMUSP00000119514 TRANSLATION protein_coding stop - 3 57.0 9.0 1.5 0.0 29.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028671 Gale ENSMUST00000102541 ENSMUSP00000099600 TRANSLATION protein_coding - CCDS18796.1 1 347.0 26.0 8.75 22.5 198.8 0.0 -4,-6 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000028671 Gale ENSMUST00000150430 - NO_TRANSLATION retained_intron ENSMUSG00000028671 Gale ENSMUST00000102540 ENSMUSP00000099599 TRANSLATION protein_coding - CCDS18796.1 1 347.0 26.0 8.75 22.5 198.8 0.0 -4,-6 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000028671 Gale ENSMUST00000153542 - NO_TRANSLATION retained_intron ENSMUSG00000028671 Gale ENSMUST00000128929 - NO_TRANSLATION retained_intron ENSMUSG00000028671 Gale ENSMUST00000149636 ENSMUSP00000117923 TRANSLATION protein_coding stop - 3 60.0 9.0 1.5 0.0 29.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000078513 Pramel22 ENSMUST00000105771 ENSMUSP00000101397 TRANSLATION protein_coding - CCDS51356.1 5 460.0 2.0 1.9 0.0 0.0 0.0 -4,-5 0.9892 - 8.0 PRINCIPAL:1 ENSMUSG00000019055 Plod1 ENSMUST00000124292 - NO_TRANSLATION retained_intron ENSMUSG00000019055 Plod1 ENSMUST00000124041 - NO_TRANSLATION retained_intron ENSMUSG00000019055 Plod1 ENSMUST00000105712 ENSMUSP00000101337 TRANSLATION protein_coding - - 2 226.0 0.0 4.75 0.0 0.0 0.0 4,-1 0.0008 7 0.0 MINOR ENSMUSG00000019055 Plod1 ENSMUST00000132075 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019055 Plod1 ENSMUST00000019199 ENSMUSP00000019199 TRANSLATION protein_coding - CCDS18924.1 1 728.0 3.0 17.4 3.3 27.6 0.0 4,-1 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000019055 Plod1 ENSMUST00000149129 ENSMUSP00000118857 TRANSLATION protein_coding start/stop - 5 269.0 0.0 5.75 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000028345 Tex10 ENSMUST00000164866 ENSMUSP00000132498 TRANSLATION protein_coding - CCDS38760.1 1 928.0 0.0 0.0 10.8 84.3 0.0 -4,-5 1.0 16 9.0 PRINCIPAL:1 ENSMUSG00000028345 Tex10 ENSMUST00000155750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028345 Tex10 ENSMUST00000030030 ENSMUSP00000030030 TRANSLATION protein_coding - CCDS38760.1 1 928.0 0.0 0.0 10.8 84.3 0.0 -4,-5 1.0 16 9.0 PRINCIPAL:1 ENSMUSG00000028345 Tex10 ENSMUST00000132911 - NO_TRANSLATION retained_intron ENSMUSG00000028345 Tex10 ENSMUST00000138531 - NO_TRANSLATION retained_intron ENSMUSG00000028345 Tex10 ENSMUST00000155905 ENSMUSP00000114669 TRANSLATION nonsense_mediated_decay start - 1 338.0 0.0 0.0 0.0 84.3 0.0 -4,-7 0.0398 6 -2.0 MINOR ENSMUSG00000028514 Usp24 ENSMUST00000106798 - NO_TRANSLATION retained_intron ENSMUSG00000028514 Usp24 ENSMUST00000094933 ENSMUSP00000092538 TRANSLATION protein_coding - - 5 2637.0 4.0 6.41 4.4 156.8 0.0 -4,-5 1.0 57 18.0 PRINCIPAL:1 ENSMUSG00000028514 Usp24 ENSMUST00000150521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028459 Cd72 ENSMUST00000098104 ENSMUSP00000095708 TRANSLATION protein_coding - CCDS51164.1 1 300.0 0.0 3.15 0.0 0.0 0.0 -4,-5 0.1278 1 4.872 MINOR ENSMUSG00000028459 Cd72 ENSMUST00000107926 ENSMUSP00000103559 TRANSLATION protein_coding - CCDS38740.1 1 354.0 0.0 3.55 0.3 0.0 3.0 -4,-5 0.2732 2 5.67 ALTERNATIVE:2 ENSMUSG00000028459 Cd72 ENSMUST00000133110 - NO_TRANSLATION retained_intron ENSMUSG00000028459 Cd72 ENSMUST00000140284 - NO_TRANSLATION retained_intron ENSMUSG00000028459 Cd72 ENSMUST00000151868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028459 Cd72 ENSMUST00000107925 ENSMUSP00000103558 TRANSLATION protein_coding - - 1 347.0 0.0 3.55 0.0 0.0 3.0 -4,-5 0.1208 2 5.67 ALTERNATIVE:2 ENSMUSG00000028459 Cd72 ENSMUST00000030179 ENSMUSP00000030179 TRANSLATION protein_coding - CCDS51166.1 1 361.0 0.0 3.715 0.3 0.0 3.0 -4,-5 0.3661 2 6.0 ALTERNATIVE:2 ENSMUSG00000028459 Cd72 ENSMUST00000098105 ENSMUSP00000095709 TRANSLATION protein_coding - CCDS51165.1 1 337.0 0.0 3.715 0.0 0.0 3.0 -4,-5 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000028459 Cd72 ENSMUST00000134850 - NO_TRANSLATION retained_intron ENSMUSG00000028459 Cd72 ENSMUST00000141198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028910 Mecr ENSMUST00000139573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028910 Mecr ENSMUST00000128116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028910 Mecr ENSMUST00000143067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028910 Mecr ENSMUST00000142386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028910 Mecr ENSMUST00000145045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028910 Mecr ENSMUST00000127735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028910 Mecr ENSMUST00000128607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028910 Mecr ENSMUST00000137412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028910 Mecr ENSMUST00000030742 ENSMUSP00000030742 TRANSLATION protein_coding - CCDS18715.1 1 373.0 24.0 8.85 3.3 62.0 0.0 -4,0 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000028910 Mecr ENSMUST00000137321 ENSMUSP00000114543 TRANSLATION protein_coding stop - 5 251.0 9.0 4.6 0.0 0.0 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000037188 Grhl3 ENSMUST00000105855 ENSMUSP00000101481 TRANSLATION protein_coding - CCDS38920.1 1 603.0 0.0 2.705 16.0 262.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000048686 Hmgb4 ENSMUST00000053830 ENSMUSP00000059625 TRANSLATION protein_coding - CCDS18671.1 - 181.0 0.0 1.0 0.1 133.3 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025328 Padi3 ENSMUST00000172098 ENSMUSP00000130721 TRANSLATION protein_coding - - 1 654.0 11.0 13.75 0.0 822.3 0.0 1,-3 0.0862 - 13.164 MINOR ENSMUSG00000025328 Padi3 ENSMUST00000026377 ENSMUSP00000026377 TRANSLATION protein_coding - CCDS18855.1 1 664.0 11.0 14.75 9.7 869.6 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000052407 Ccdc171 ENSMUST00000231339 ENSMUSP00000155912 TRANSLATION protein_coding - - - 1332.0 0.0 0.0 10.0 0.0 0.0 -4,-6 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000052407 Ccdc171 ENSMUST00000107202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052407 Ccdc171 ENSMUST00000125077 ENSMUSP00000116486 TRANSLATION nonsense_mediated_decay - - 1 368.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0318 1 -2.0 MINOR ENSMUSG00000052407 Ccdc171 ENSMUST00000126429 ENSMUSP00000138195 TRANSLATION protein_coding - - 1 132.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0105 - 0.0 MINOR ENSMUSG00000052407 Ccdc171 ENSMUST00000053414 ENSMUSP00000056520 TRANSLATION protein_coding - - 5 1324.0 0.0 0.0 1.4 0.0 0.0 -4,-6 0.3421 2 0.132 MINOR ENSMUSG00000052407 Ccdc171 ENSMUST00000183729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096705 Or10ak8 ENSMUST00000071979 ENSMUSP00000071870 TRANSLATION protein_coding - CCDS18566.1 - 313.0 0.0 1.0 5.6 185.5 0.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028391 Wdr31 ENSMUST00000146108 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028391 Wdr31 ENSMUST00000030087 ENSMUSP00000030087 TRANSLATION protein_coding - CCDS18240.1 1 367.0 0.0 8.25 9.1 84.3 0.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000028391 Wdr31 ENSMUST00000132263 ENSMUSP00000120684 TRANSLATION protein_coding start - 5 112.0 0.0 2.8 0.0 21.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028391 Wdr31 ENSMUST00000120095 ENSMUSP00000112719 TRANSLATION protein_coding - CCDS18240.1 1 367.0 0.0 8.25 9.1 84.3 0.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000028391 Wdr31 ENSMUST00000155522 ENSMUSP00000123624 TRANSLATION protein_coding stop - 3 83.0 0.0 1.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028391 Wdr31 ENSMUST00000107452 ENSMUSP00000103076 TRANSLATION protein_coding - CCDS71402.1 1 366.0 0.0 8.25 9.1 84.3 0.0 -4,-7 0.9927 - 11.0 ALTERNATIVE:1 ENSMUSG00000028391 Wdr31 ENSMUST00000135811 ENSMUSP00000116182 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028391 Wdr31 ENSMUST00000153615 - NO_TRANSLATION retained_intron ENSMUSG00000028391 Wdr31 ENSMUST00000149281 - NO_TRANSLATION retained_intron ENSMUSG00000039523 Cep104 ENSMUST00000155414 - NO_TRANSLATION retained_intron ENSMUSG00000039523 Cep104 ENSMUST00000047497 ENSMUSP00000040762 TRANSLATION protein_coding - CCDS19005.1 1 926.0 14.0 8.9 0.4 0.0 0.0 -4,-6 0.9483 5 12.0 PRINCIPAL:1 ENSMUSG00000039523 Cep104 ENSMUST00000183790 ENSMUSP00000139349 TRANSLATION nonsense_mediated_decay start - 5 524.0 14.0 8.9 0.0 0.0 0.0 -4,-5 0.0674 3 -2.0 MINOR ENSMUSG00000062937 Mtap ENSMUST00000058030 ENSMUSP00000061092 TRANSLATION protein_coding - CCDS18349.1 1 283.0 9.0 6.198 14.9 164.0 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000062937 Mtap ENSMUST00000204571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028691 Prdx1 ENSMUST00000151129 ENSMUSP00000119794 TRANSLATION protein_coding stop - 3 169.0 0.0 4.0 0.0 137.0 0.0 -4,-7 0.0002 14 -2.0 MINOR ENSMUSG00000028691 Prdx1 ENSMUST00000030454 ENSMUSP00000030454 TRANSLATION protein_coding stop - 2 176.0 0.0 4.0 0.0 160.2 0.0 -4,-7 0.0005 14 -2.0 MINOR ENSMUSG00000028691 Prdx1 ENSMUST00000129315 ENSMUSP00000117007 TRANSLATION protein_coding stop - 3 123.0 0.0 3.0 0.0 117.4 0.0 -4,-7 0.0 10 -2.0 MINOR ENSMUSG00000028691 Prdx1 ENSMUST00000106470 ENSMUSP00000102078 TRANSLATION protein_coding - CCDS18515.1 5 199.0 0.0 4.75 36.9 190.8 0.0 -4,-7 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000028691 Prdx1 ENSMUST00000135573 ENSMUSP00000114159 TRANSLATION protein_coding - CCDS18515.1 1 199.0 0.0 4.75 36.9 190.8 0.0 -4,-7 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000028691 Prdx1 ENSMUST00000156145 - NO_TRANSLATION retained_intron ENSMUSG00000035201 Pramel17 ENSMUST00000106919 ENSMUSP00000102532 TRANSLATION protein_coding - CCDS51241.1 1 476.0 0.0 2.2 0.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028803 Nipal3 ENSMUST00000148023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028803 Nipal3 ENSMUST00000183807 ENSMUSP00000139088 TRANSLATION nonsense_mediated_decay - CCDS84805.1 1 418.0 0.0 7.01 0.0 240.7 18.0 -4,-7 0.2999 1 -2.0 MINOR ENSMUSG00000028803 Nipal3 ENSMUST00000102549 ENSMUSP00000099608 TRANSLATION protein_coding - CCDS18786.1 1 410.0 0.0 7.01 19.2 240.7 18.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028803 Nipal3 ENSMUST00000145020 ENSMUSP00000118122 TRANSLATION protein_coding stop - 3 107.0 0.0 1.75 0.0 60.1 2.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028803 Nipal3 ENSMUST00000140982 ENSMUSP00000118178 TRANSLATION protein_coding start - 3 209.0 0.0 4.45 0.0 151.6 14.0 -3,-5 0.0029 1 -2.0 MINOR ENSMUSG00000028803 Nipal3 ENSMUST00000146617 ENSMUSP00000121776 TRANSLATION protein_coding stop - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028803 Nipal3 ENSMUST00000105856 ENSMUSP00000101482 TRANSLATION protein_coding - CCDS84805.1 1 418.0 0.0 7.01 0.0 240.7 18.0 -4,-7 0.2999 1 12.0 MINOR ENSMUSG00000028803 Nipal3 ENSMUST00000183397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028703 Lrrc41 ENSMUST00000133799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028703 Lrrc41 ENSMUST00000154274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028703 Lrrc41 ENSMUST00000030471 ENSMUSP00000030471 TRANSLATION protein_coding - CCDS84786.1 1 807.0 0.0 1.68 9.9 0.0 0.0 -4,-7 1.0 15 9.0 PRINCIPAL:1 ENSMUSG00000028703 Lrrc41 ENSMUST00000134983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028703 Lrrc41 ENSMUST00000138952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028703 Lrrc41 ENSMUST00000152577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028492 Saxo1 ENSMUST00000030216 ENSMUSP00000030216 TRANSLATION protein_coding - CCDS38795.1 1 476.0 0.0 0.0 1.4 0.0 0.0 -4,-2 0.9193 9 1.0 PRINCIPAL:1 ENSMUSG00000028492 Saxo1 ENSMUST00000151481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028492 Saxo1 ENSMUST00000139694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028492 Saxo1 ENSMUST00000133793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028455 Stoml2 ENSMUST00000153203 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028455 Stoml2 ENSMUST00000138030 ENSMUSP00000118465 TRANSLATION protein_coding start/stop - 3 212.0 0.0 5.0 0.0 106.1 0.0 1,3 0.0008 5 -2.0 MINOR ENSMUSG00000028455 Stoml2 ENSMUST00000030169 ENSMUSP00000030169 TRANSLATION protein_coding - CCDS18089.1 1 353.0 0.0 7.95 11.3 190.0 0.0 -2,2 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000028455 Stoml2 ENSMUST00000136326 ENSMUSP00000117586 TRANSLATION protein_coding stop - 5 286.0 0.0 6.95 0.0 166.0 0.0 -4,0 0.0018 11 -2.0 MINOR ENSMUSG00000028455 Stoml2 ENSMUST00000123465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028455 Stoml2 ENSMUST00000143371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028455 Stoml2 ENSMUST00000142781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028455 Stoml2 ENSMUST00000125180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028455 Stoml2 ENSMUST00000135660 ENSMUSP00000123478 TRANSLATION protein_coding start/stop - 2 287.0 0.0 7.05 0.0 171.2 0.0 -4,-7 0.0022 11 -2.0 MINOR ENSMUSG00000028455 Stoml2 ENSMUST00000126026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028455 Stoml2 ENSMUST00000127645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028396 2310002L09Rik ENSMUST00000095023 ENSMUSP00000092633 TRANSLATION protein_coding - CCDS51211.1 1 217.0 0.0 0.75 0.4 0.0 1.0 -4,0 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000028396 2310002L09Rik ENSMUST00000030101 ENSMUSP00000030101 TRANSLATION protein_coding - CCDS18285.1 1 200.0 0.0 0.0 0.1 0.0 1.0 -4,0 0.2159 1 0.0 MINOR ENSMUSG00000028396 2310002L09Rik ENSMUST00000149981 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087166 L1td1 ENSMUST00000152889 ENSMUSP00000131563 TRANSLATION protein_coding stop - 2 147.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000087166 L1td1 ENSMUST00000171708 ENSMUSP00000132806 TRANSLATION protein_coding stop - 3 119.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000087166 L1td1 ENSMUST00000154279 ENSMUSP00000127504 TRANSLATION protein_coding - CCDS51235.1 1 782.0 0.0 0.92 0.0 76.0 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000087166 L1td1 ENSMUST00000173659 ENSMUSP00000134149 TRANSLATION protein_coding - - 2 848.0 0.0 0.92 0.0 76.0 0.0 -4,-7 0.1422 - 8.0 ALTERNATIVE:2 ENSMUSG00000035683 Melk ENSMUST00000125708 ENSMUSP00000118359 TRANSLATION protein_coding stop - 5 133.0 9.0 4.0 0.0 97.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035683 Melk ENSMUST00000137703 ENSMUSP00000120242 TRANSLATION protein_coding stop - 5 214.0 14.0 6.5 0.0 168.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035683 Melk ENSMUST00000137759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035683 Melk ENSMUST00000045607 ENSMUSP00000043806 TRANSLATION protein_coding - CCDS18124.1 1 643.0 18.0 9.83 9.1 298.3 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000028698 Pik3r3 ENSMUST00000030464 ENSMUSP00000030464 TRANSLATION protein_coding - CCDS18509.1 1 461.0 0.0 8.48 28.5 344.4 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000028698 Pik3r3 ENSMUST00000147292 ENSMUSP00000118568 TRANSLATION protein_coding stop - 5 82.0 0.0 1.13 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028698 Pik3r3 ENSMUST00000106490 ENSMUSP00000102099 TRANSLATION protein_coding - - 5 402.0 0.0 7.48 1.0 237.3 0.0 -4,-5 0.0061 4 4.002 MINOR ENSMUSG00000043924 Ncmap ENSMUST00000064481 ENSMUSP00000070780 TRANSLATION protein_coding - CCDS18784.1 3 100.0 0.0 0.0 10.3 0.0 2.0 -4,-7 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000043924 Ncmap ENSMUST00000105859 ENSMUSP00000101485 TRANSLATION protein_coding - CCDS18784.1 1 100.0 0.0 0.0 10.3 0.0 2.0 -4,-7 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000043924 Ncmap ENSMUST00000154518 ENSMUSP00000116389 TRANSLATION protein_coding stop - 5 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0087 - -2.0 MINOR ENSMUSG00000043924 Ncmap ENSMUST00000134717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043924 Ncmap ENSMUST00000105858 ENSMUSP00000101484 TRANSLATION protein_coding - CCDS18784.1 1 100.0 0.0 0.0 10.3 0.0 2.0 -4,-7 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000043924 Ncmap ENSMUST00000123632 ENSMUSP00000118237 TRANSLATION protein_coding stop - 3 73.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0324 - -2.0 MINOR ENSMUSG00000043924 Ncmap ENSMUST00000105857 ENSMUSP00000101483 TRANSLATION protein_coding - CCDS18784.1 1 100.0 0.0 0.0 10.3 0.0 2.0 -4,-7 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000043924 Ncmap ENSMUST00000105860 ENSMUSP00000101486 TRANSLATION protein_coding - CCDS57304.1 1 118.0 0.0 0.0 0.0 0.0 2.0 -4,-6 0.1164 1 0.0 MINOR ENSMUSG00000070868 Skint3 ENSMUST00000038455 ENSMUSP00000042662 TRANSLATION protein_coding - CCDS38838.1 1 386.0 0.0 2.15 0.0 80.8 2.0 0,-5 0.1474 - 10.692 MINOR ENSMUSG00000070868 Skint3 ENSMUST00000170945 ENSMUSP00000131300 TRANSLATION protein_coding - CCDS51268.1 1 458.0 0.0 2.75 0.0 80.8 3.0 0,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028690 Mmachc ENSMUST00000030453 ENSMUSP00000030453 TRANSLATION protein_coding - CCDS51278.1 1 279.0 0.0 3.75 8.5 327.3 0.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000028690 Mmachc ENSMUST00000143330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028889 Yrdc ENSMUST00000173434 - NO_TRANSLATION retained_intron ENSMUSG00000028889 Yrdc ENSMUST00000144851 ENSMUSP00000114150 TRANSLATION protein_coding stop - 2 105.0 0.0 2.2 0.0 63.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028889 Yrdc ENSMUST00000102628 ENSMUSP00000099688 TRANSLATION protein_coding - CCDS18628.2 1 280.0 0.0 3.5 9.2 149.8 0.0 -3,0 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000040945 Rcc2 ENSMUST00000138808 ENSMUSP00000117448 TRANSLATION protein_coding stop - 2 170.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000040945 Rcc2 ENSMUST00000138682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040945 Rcc2 ENSMUST00000129838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040945 Rcc2 ENSMUST00000038893 ENSMUSP00000038144 TRANSLATION protein_coding - CCDS18852.1 1 520.0 0.0 10.25 6.6 180.8 0.0 -4,-6 1.0 23 14.0 PRINCIPAL:1 ENSMUSG00000040945 Rcc2 ENSMUST00000071169 ENSMUSP00000071163 TRANSLATION protein_coding - CCDS18852.1 1 520.0 0.0 10.25 6.6 180.8 0.0 -4,-6 1.0 23 14.0 PRINCIPAL:1 ENSMUSG00000028879 Stx12 ENSMUST00000030698 ENSMUSP00000030698 TRANSLATION protein_coding - CCDS18737.1 1 274.0 0.0 5.72 26.0 169.4 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000028879 Stx12 ENSMUST00000137109 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028287 1700009N14Rik ENSMUST00000029955 ENSMUSP00000029955 TRANSLATION protein_coding - CCDS38709.1 1 216.0 22.0 1.0 32.5 165.7 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000073991 Cnbd1 ENSMUST00000249097 ENSMUSP00000159580 TRANSLATION nonsense_mediated_decay - - - 434.0 13.0 3.6 0.1 0.0 0.0 -4,-5 0.0621 - -2.0 MINOR ENSMUSG00000073991 Cnbd1 ENSMUST00000137780 ENSMUSP00000121576 TRANSLATION protein_coding - - 5 512.0 13.0 3.6 1.1 0.0 0.0 -4,-5 0.6605 - 13.0 PRINCIPAL:1 ENSMUSG00000008575 Nfib ENSMUST00000107248 ENSMUSP00000102869 TRANSLATION protein_coding - - 1 569.0 0.0 1.75 24.0 532.8 0.0 -4,-5 0.8288 13 11.152 ALTERNATIVE:1 ENSMUSG00000008575 Nfib ENSMUST00000155821 ENSMUSP00000123169 TRANSLATION protein_coding stop - 3 174.0 0.0 1.0 0.0 124.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000008575 Nfib ENSMUST00000107246 ENSMUSP00000102866 TRANSLATION protein_coding - - 1 486.0 0.0 1.75 16.3 420.7 0.0 -4,-5 0.5009 12 9.43 MINOR ENSMUSG00000008575 Nfib ENSMUST00000050872 ENSMUSP00000052863 TRANSLATION protein_coding - CCDS51213.1 1 570.0 0.0 1.75 25.0 532.8 0.0 -4,-5 1.0 13 11.288 PRINCIPAL:4 ENSMUSG00000008575 Nfib ENSMUST00000122918 - NO_TRANSLATION retained_intron ENSMUSG00000008575 Nfib ENSMUST00000107247 ENSMUSP00000102868 TRANSLATION protein_coding - - 5 560.0 0.0 1.75 30.2 507.8 0.0 -4,-5 0.8232 13 11.666 ALTERNATIVE:1 ENSMUSG00000008575 Nfib ENSMUST00000064770 ENSMUSP00000067629 TRANSLATION protein_coding - CCDS38790.1 1 420.0 0.0 1.75 16.2 417.5 0.0 -4,-5 0.5791 11 9.418 MINOR ENSMUSG00000008575 Nfib ENSMUST00000107245 ENSMUSP00000102865 TRANSLATION protein_coding - - 1 493.0 0.0 1.75 14.2 515.8 0.0 -4,-5 0.6041 11 9.474 MINOR ENSMUSG00000008575 Nfib ENSMUST00000148982 - NO_TRANSLATION retained_intron ENSMUSG00000008575 Nfib ENSMUST00000152588 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008575 Nfib ENSMUST00000135024 - NO_TRANSLATION retained_intron ENSMUSG00000008575 Nfib ENSMUST00000140874 - NO_TRANSLATION retained_intron ENSMUSG00000066191 Anks6 ENSMUST00000154664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066191 Anks6 ENSMUST00000152479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066191 Anks6 ENSMUST00000084616 ENSMUSP00000081665 TRANSLATION protein_coding - CCDS18157.1 5 815.0 0.0 4.5 0.0 194.8 0.0 -3,-4 0.481 6 7.0 ALTERNATIVE:2 ENSMUSG00000066191 Anks6 ENSMUST00000229609 ENSMUSP00000155271 TRANSLATION protein_coding - - - 883.0 0.0 4.5 0.4 200.2 0.0 -3,-4 0.8097 6 8.0 PRINCIPAL:2 ENSMUSG00000066191 Anks6 ENSMUST00000107747 ENSMUSP00000103376 TRANSLATION nonsense_mediated_decay - - 1 815.0 0.0 3.5 0.4 157.9 0.0 -3,-4 0.0157 5 -2.0 MINOR ENSMUSG00000073842 Mup7 ENSMUST00000125282 ENSMUSP00000115582 TRANSLATION protein_coding stop - 2 171.0 0.0 4.55 0.0 102.5 0.0 4,-1 0.0535 - -2.0 MINOR ENSMUSG00000073842 Mup7 ENSMUST00000079697 ENSMUSP00000078636 TRANSLATION protein_coding - CCDS84739.1 1 180.0 0.0 4.88 0.0 107.6 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000073842 Mup7 ENSMUST00000166098 ENSMUSP00000130795 TRANSLATION protein_coding - - 5 235.0 0.0 4.85 0.0 107.6 0.0 4,-1 0.1267 - 7.94 ALTERNATIVE:2 ENSMUSG00000073987 Ggh ENSMUST00000098242 ENSMUSP00000095843 TRANSLATION protein_coding - CCDS51126.1 1 317.0 3.0 7.45 7.0 81.3 0.0 3,-2 1.0 12 17.0 PRINCIPAL:1 ENSMUSG00000015247 Nipsnap3b ENSMUST00000107665 ENSMUSP00000103292 TRANSLATION protein_coding - CCDS84730.1 2 197.0 0.0 3.5 2.0 144.6 0.0 -4,0 0.019 6 7.346 MINOR ENSMUSG00000015247 Nipsnap3b ENSMUST00000015391 ENSMUSP00000015391 TRANSLATION protein_coding - CCDS18186.1 1 247.0 0.0 4.5 17.9 192.8 0.0 -4,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000015247 Nipsnap3b ENSMUST00000132678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000065990 Aurkaip1 ENSMUST00000139651 ENSMUSP00000117870 TRANSLATION protein_coding stop - 2 147.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0183 - -2.0 MINOR ENSMUSG00000065990 Aurkaip1 ENSMUST00000105592 ENSMUSP00000101217 TRANSLATION protein_coding - CCDS19043.1 2 200.0 0.0 1.5 11.0 0.0 0.0 -4,0 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000065990 Aurkaip1 ENSMUST00000105591 ENSMUSP00000101216 TRANSLATION protein_coding - CCDS19043.1 3 200.0 0.0 1.5 11.0 0.0 0.0 -4,0 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000065990 Aurkaip1 ENSMUST00000129711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000065990 Aurkaip1 ENSMUST00000084097 ENSMUSP00000081114 TRANSLATION protein_coding - CCDS19043.1 1 200.0 0.0 1.5 11.0 0.0 0.0 -4,0 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000065990 Aurkaip1 ENSMUST00000151222 - NO_TRANSLATION retained_intron ENSMUSG00000028914 Casp9 ENSMUST00000097805 ENSMUSP00000095414 TRANSLATION protein_coding - CCDS71510.1 1 405.0 0.0 5.588 0.0 175.2 0.0 -4,-6 0.0058 4 4.974 MINOR ENSMUSG00000028914 Casp9 ENSMUST00000128660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028914 Casp9 ENSMUST00000030747 ENSMUSP00000030747 TRANSLATION protein_coding - CCDS18883.1 1 454.0 0.0 7.548 4.0 227.0 0.0 -4,-6 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000028914 Casp9 ENSMUST00000153094 ENSMUSP00000121331 TRANSLATION protein_coding stop - 3 215.0 0.0 2.548 0.0 75.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028914 Casp9 ENSMUST00000124161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028914 Casp9 ENSMUST00000138359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023571 C1qtnf12 ENSMUST00000127222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023571 C1qtnf12 ENSMUST00000024338 ENSMUSP00000024338 TRANSLATION protein_coding - CCDS19052.1 1 308.0 0.0 0.0 1.4 0.0 0.0 3,-3 0.9756 4 1.0 PRINCIPAL:1 ENSMUSG00000023571 C1qtnf12 ENSMUST00000149558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028348 Cavin4 ENSMUST00000030033 ENSMUSP00000030033 TRANSLATION protein_coding - CCDS18169.2 1 362.0 0.0 1.0 8.8 296.5 0.0 -4,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000028280 Gabrr1 ENSMUST00000029947 ENSMUSP00000029947 TRANSLATION protein_coding - CCDS18021.2 1 480.0 0.0 5.07 11.5 283.8 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035069 Oma1 ENSMUST00000133178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035069 Oma1 ENSMUST00000143399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035069 Oma1 ENSMUST00000035780 ENSMUSP00000045269 TRANSLATION protein_coding - CCDS18412.1 1 521.0 5.0 6.75 3.9 103.3 0.0 -4,0 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000028558 Calr4 ENSMUST00000106631 ENSMUSP00000102242 TRANSLATION protein_coding - CCDS71441.1 1 313.0 1.0 6.3 0.3 192.2 0.0 -4,-5 0.0078 - 4.474 MINOR ENSMUSG00000028558 Calr4 ENSMUST00000030285 ENSMUSP00000030285 TRANSLATION protein_coding - CCDS18461.1 1 420.0 4.0 8.3 0.0 267.6 0.0 0,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000028558 Calr4 ENSMUST00000106629 ENSMUSP00000102240 TRANSLATION protein_coding - CCDS71441.1 1 313.0 1.0 6.3 0.3 192.2 0.0 -4,-5 0.0078 - 4.474 MINOR ENSMUSG00000028558 Calr4 ENSMUST00000141555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028558 Calr4 ENSMUST00000106628 ENSMUSP00000102239 TRANSLATION protein_coding - CCDS71441.1 1 313.0 1.0 6.3 0.3 192.2 0.0 -4,-5 0.0078 - 4.474 MINOR ENSMUSG00000028252 Ccnc ENSMUST00000065928 ENSMUSP00000069076 TRANSLATION protein_coding - CCDS51127.1 1 282.0 0.0 7.93 9.6 77.0 0.0 -4,-5 0.6236 4 13.488 MINOR ENSMUSG00000028252 Ccnc ENSMUST00000102997 ENSMUSP00000100062 TRANSLATION protein_coding - CCDS17998.1 1 283.0 0.0 7.83 24.1 77.0 0.0 -4,-5 1.0 3 15.802 PRINCIPAL:1 ENSMUSG00000028252 Ccnc ENSMUST00000108240 ENSMUSP00000103875 TRANSLATION protein_coding - CCDS51127.1 1 282.0 0.0 7.93 9.6 77.0 0.0 -4,-5 0.6236 4 13.488 MINOR ENSMUSG00000028252 Ccnc ENSMUST00000133712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028252 Ccnc ENSMUST00000120679 ENSMUSP00000113682 TRANSLATION protein_coding - CCDS71350.1 1 266.0 0.0 7.83 0.0 77.0 0.0 -4,-5 0.1057 3 11.802 MINOR ENSMUSG00000028252 Ccnc ENSMUST00000133597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028252 Ccnc ENSMUST00000145288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028252 Ccnc ENSMUST00000123294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028965 Tnfrsf9 ENSMUST00000116257 ENSMUSP00000111961 TRANSLATION protein_coding - CCDS18976.1 1 256.0 0.0 4.55 0.1 26.5 1.0 1,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000028965 Tnfrsf9 ENSMUST00000139826 ENSMUSP00000117860 TRANSLATION protein_coding stop - 3 176.0 0.0 4.35 0.0 26.5 0.0 1,-3 0.107 - -2.0 MINOR ENSMUSG00000028965 Tnfrsf9 ENSMUST00000060901 ENSMUSP00000059684 TRANSLATION protein_coding - CCDS38980.1 1 211.0 0.0 4.35 0.0 26.5 0.0 1,-3 0.2874 - 7.598 ALTERNATIVE:2 ENSMUSG00000028965 Tnfrsf9 ENSMUST00000030808 ENSMUSP00000030808 TRANSLATION protein_coding - CCDS18976.1 1 256.0 0.0 4.55 0.1 26.5 1.0 1,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000028965 Tnfrsf9 ENSMUST00000135169 ENSMUSP00000120761 TRANSLATION protein_coding stop - 3 179.0 0.0 4.35 0.0 26.5 0.0 1,-3 0.107 - -2.0 MINOR ENSMUSG00000028965 Tnfrsf9 ENSMUST00000105672 ENSMUSP00000101297 TRANSLATION protein_coding - CCDS38980.1 1 211.0 0.0 4.35 0.0 26.5 0.0 1,-3 0.2874 - 7.598 ALTERNATIVE:2 ENSMUSG00000028965 Tnfrsf9 ENSMUST00000105671 ENSMUSP00000101296 TRANSLATION protein_coding - CCDS18976.1 1 256.0 0.0 4.55 0.1 26.5 1.0 1,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000028965 Tnfrsf9 ENSMUST00000146133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028965 Tnfrsf9 ENSMUST00000126707 ENSMUSP00000122917 TRANSLATION protein_coding stop - 5 224.0 0.0 4.55 0.0 26.5 1.0 1,-3 0.1493 - -2.0 MINOR ENSMUSG00000028653 Trit1 ENSMUST00000141855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028653 Trit1 ENSMUST00000147165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028653 Trit1 ENSMUST00000102649 ENSMUSP00000099709 TRANSLATION protein_coding - CCDS18607.1 1 467.0 5.0 3.98 7.2 246.3 0.0 -1,3 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000095567 Noc2l ENSMUST00000238476 - NO_TRANSLATION retained_intron ENSMUSG00000095567 Noc2l ENSMUST00000179886 - NO_TRANSLATION retained_intron ENSMUSG00000095567 Noc2l ENSMUST00000179543 ENSMUSP00000137253 TRANSLATION protein_coding - CCDS57322.1 1 750.0 0.0 9.3 0.4 416.9 0.0 -4,-7 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000095567 Noc2l ENSMUST00000238320 - NO_TRANSLATION retained_intron ENSMUSG00000095567 Noc2l ENSMUST00000238213 - NO_TRANSLATION retained_intron ENSMUSG00000028552 Eps15 ENSMUST00000175776 ENSMUSP00000135270 TRANSLATION protein_coding - - 5 933.0 13.0 10.969 5.3 12.0 0.0 -3,-5 0.6633 29 19.593 MINOR ENSMUSG00000028552 Eps15 ENSMUST00000150755 - NO_TRANSLATION retained_intron ENSMUSG00000028552 Eps15 ENSMUST00000177140 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028552 Eps15 ENSMUST00000126015 - NO_TRANSLATION retained_intron ENSMUSG00000028552 Eps15 ENSMUST00000102729 ENSMUSP00000099790 TRANSLATION protein_coding - CCDS18462.1 1 897.0 13.0 10.969 9.1 12.0 0.0 -3,-5 1.0 29 21.0 PRINCIPAL:1 ENSMUSG00000028552 Eps15 ENSMUST00000030281 ENSMUSP00000030281 TRANSLATION protein_coding - CCDS51259.1 1 583.0 0.0 2.175 1.7 0.0 0.0 -4,-7 0.0877 11 0.258 MINOR ENSMUSG00000028552 Eps15 ENSMUST00000177089 ENSMUSP00000134922 TRANSLATION protein_coding stop - 3 103.0 3.0 2.564 0.0 0.0 0.0 -3,-5 0.0003 5 -2.0 MINOR ENSMUSG00000028552 Eps15 ENSMUST00000177192 ENSMUSP00000135755 TRANSLATION protein_coding start - 3 150.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 4 -2.0 MINOR ENSMUSG00000028552 Eps15 ENSMUST00000176251 ENSMUSP00000135034 TRANSLATION nonsense_mediated_decay - - 1 793.0 13.0 10.969 1.0 12.0 0.0 -3,-5 0.195 28 -2.0 MINOR ENSMUSG00000028552 Eps15 ENSMUST00000132165 ENSMUSP00000118949 TRANSLATION protein_coding - - 5 764.0 13.0 10.569 0.0 12.0 0.0 -3,-5 0.0281 25 17.202 MINOR ENSMUSG00000028552 Eps15 ENSMUST00000141751 - NO_TRANSLATION retained_intron ENSMUSG00000040659 Efhd2 ENSMUST00000036854 ENSMUSP00000044502 TRANSLATION protein_coding - CCDS18885.1 1 240.0 7.0 2.4 19.1 32.8 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000003810 Mast2 ENSMUST00000106484 ENSMUSP00000102093 TRANSLATION protein_coding - CCDS38850.1 1 1800.0 19.0 3.49 0.4 705.6 0.0 -4,-7 0.6271 17 14.0 ALTERNATIVE:2 ENSMUSG00000003810 Mast2 ENSMUST00000123761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003810 Mast2 ENSMUST00000123072 ENSMUSP00000118340 TRANSLATION protein_coding stop - 3 203.0 0.0 0.0 0.0 231.3 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000003810 Mast2 ENSMUST00000239177 ENSMUSP00000159199 TRANSLATION protein_coding - - - 1714.0 19.0 3.49 2.4 705.6 0.0 -4,0 1.0 14 15.0 PRINCIPAL:2 ENSMUSG00000003810 Mast2 ENSMUST00000156884 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003810 Mast2 ENSMUST00000147262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003810 Mast2 ENSMUST00000151347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003810 Mast2 ENSMUST00000239239 ENSMUSP00000159270 TRANSLATION protein_coding - - - 1642.0 19.0 3.49 0.0 696.3 0.0 -4,0 0.2258 14 13.334 MINOR ENSMUSG00000003810 Mast2 ENSMUST00000147459 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003810 Mast2 ENSMUST00000131809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003810 Mast2 ENSMUST00000003908 ENSMUSP00000003908 TRANSLATION protein_coding - CCDS38849.1 1 1794.0 19.0 3.49 0.4 696.3 0.0 -4,-7 0.4325 17 13.334 MINOR ENSMUSG00000003810 Mast2 ENSMUST00000144281 ENSMUSP00000122625 TRANSLATION protein_coding stop - 5 144.0 0.0 0.0 0.0 124.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000003810 Mast2 ENSMUST00000128713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003810 Mast2 ENSMUST00000128252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003810 Mast2 ENSMUST00000134460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028610 Dmrtb1 ENSMUST00000131508 - NO_TRANSLATION retained_intron ENSMUSG00000028610 Dmrtb1 ENSMUST00000069271 ENSMUSP00000064220 TRANSLATION protein_coding - CCDS51254.1 5 359.0 8.0 0.6 0.0 71.4 0.0 -4,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000028610 Dmrtb1 ENSMUST00000131776 ENSMUSP00000119617 TRANSLATION protein_coding start - 1 203.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000175969 ENSMUSP00000135656 TRANSLATION protein_coding stop - 5 181.0 4.0 1.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000176601 ENSMUSP00000135480 TRANSLATION protein_coding start - 5 86.0 5.0 1.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000176418 ENSMUSP00000135569 TRANSLATION protein_coding stop - 5 405.0 4.0 1.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000177040 ENSMUSP00000135089 TRANSLATION protein_coding start - 5 126.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000175757 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028487 Bnc2 ENSMUST00000176702 ENSMUSP00000134774 TRANSLATION protein_coding start/stop - 5 241.0 5.0 1.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000175800 ENSMUSP00000134795 TRANSLATION protein_coding stop - 5 294.0 4.0 1.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000176947 ENSMUSP00000135411 TRANSLATION protein_coding stop - 5 237.0 4.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000107198 ENSMUSP00000102816 TRANSLATION protein_coding - - 5 1099.0 21.0 2.1 3.0 34.8 0.0 -4,-6 1.0 7 15.0 PRINCIPAL:4 ENSMUSG00000028487 Bnc2 ENSMUST00000177256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028487 Bnc2 ENSMUST00000176476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028487 Bnc2 ENSMUST00000175756 ENSMUSP00000135499 TRANSLATION protein_coding stop - 5 87.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000176998 ENSMUSP00000135283 TRANSLATION protein_coding start - 5 82.0 5.0 1.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000176264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028487 Bnc2 ENSMUST00000176612 ENSMUSP00000135778 TRANSLATION protein_coding - - 5 861.0 15.0 2.1 1.0 17.3 0.0 -4,-5 0.1454 7 8.998 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000177277 ENSMUSP00000135580 TRANSLATION protein_coding start - 5 85.0 5.0 1.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000176691 ENSMUSP00000135375 TRANSLATION protein_coding - CCDS18301.2 1 1032.0 21.0 2.1 1.7 34.8 0.0 -4,-6 0.7241 6 14.35 ALTERNATIVE:2 ENSMUSG00000028487 Bnc2 ENSMUST00000102820 ENSMUSP00000099884 TRANSLATION protein_coding - - 5 1127.0 21.0 2.1 2.6 34.8 0.0 -4,-6 0.8049 7 14.8 ALTERNATIVE:2 ENSMUSG00000028487 Bnc2 ENSMUST00000176346 ENSMUSP00000134942 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000176971 ENSMUSP00000135607 TRANSLATION protein_coding start - 5 239.0 8.0 0.6 0.0 17.5 0.0 -4,-7 0.0012 1 -2.0 MINOR ENSMUSG00000028487 Bnc2 ENSMUST00000123276 - NO_TRANSLATION retained_intron ENSMUSG00000028487 Bnc2 ENSMUST00000176370 ENSMUSP00000134953 TRANSLATION protein_coding stop - 5 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057375 Yipf1 ENSMUST00000143106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057375 Yipf1 ENSMUST00000155975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057375 Yipf1 ENSMUST00000139527 ENSMUSP00000115626 TRANSLATION protein_coding stop - 5 269.0 0.0 5.15 0.0 75.6 5.0 -4,-5 0.0179 1 -2.0 MINOR ENSMUSG00000057375 Yipf1 ENSMUST00000128507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057375 Yipf1 ENSMUST00000146829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057375 Yipf1 ENSMUST00000128284 ENSMUSP00000114898 TRANSLATION protein_coding stop - 5 243.0 0.0 3.92 0.0 70.5 4.0 -4,-5 0.0039 2 -2.0 MINOR ENSMUSG00000057375 Yipf1 ENSMUST00000137391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057375 Yipf1 ENSMUST00000075693 ENSMUSP00000075113 TRANSLATION protein_coding - CCDS18437.1 1 306.0 0.0 6.1 16.1 80.3 5.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000057375 Yipf1 ENSMUST00000124254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057375 Yipf1 ENSMUST00000140162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057375 Yipf1 ENSMUST00000124650 ENSMUSP00000119107 TRANSLATION protein_coding stop - 2 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063376 Ifna13 ENSMUST00000105149 ENSMUSP00000100780 TRANSLATION protein_coding - CCDS18324.1 - 189.0 3.0 1.0 7.1 214.6 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000028859 Csf3r ENSMUST00000153968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028859 Csf3r ENSMUST00000106162 ENSMUSP00000101768 TRANSLATION protein_coding - CCDS18640.1 1 837.0 0.0 7.92 2.0 120.0 1.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000028859 Csf3r ENSMUST00000030673 ENSMUSP00000030673 TRANSLATION protein_coding - CCDS18640.1 5 837.0 0.0 7.92 2.0 120.0 1.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000028859 Csf3r ENSMUST00000140426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070979 Actl7a ENSMUST00000095079 ENSMUSP00000092692 TRANSLATION protein_coding - CCDS18197.1 - 440.0 22.0 0.6 7.9 458.5 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000028458 Tesk1 ENSMUST00000138981 ENSMUSP00000121067 TRANSLATION nonsense_mediated_decay - - 5 201.0 0.0 3.4 0.0 91.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028458 Tesk1 ENSMUST00000137178 - NO_TRANSLATION retained_intron ENSMUSG00000028458 Tesk1 ENSMUST00000126350 - NO_TRANSLATION retained_intron ENSMUSG00000028458 Tesk1 ENSMUST00000156810 - NO_TRANSLATION retained_intron ENSMUSG00000028458 Tesk1 ENSMUST00000060864 ENSMUSP00000050087 TRANSLATION protein_coding - CCDS18094.1 1 627.0 2.0 7.35 0.7 156.2 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000028549 Itgb3bp ENSMUST00000102786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028549 Itgb3bp ENSMUST00000146739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028549 Itgb3bp ENSMUST00000123045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028549 Itgb3bp ENSMUST00000146258 ENSMUSP00000117153 TRANSLATION protein_coding - CCDS18387.1 1 176.0 0.0 2.5 4.6 202.3 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000028549 Itgb3bp ENSMUST00000123830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035212 Leprot ENSMUST00000030254 ENSMUSP00000030254 TRANSLATION protein_coding - CCDS18396.1 1 131.0 0.0 0.0 35.7 135.1 6.0 0,-4 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000035212 Leprot ENSMUST00000106927 ENSMUSP00000102540 TRANSLATION protein_coding - - 1 108.0 0.0 0.0 0.0 70.7 5.0 0,-4 0.0045 1 2.136 MINOR ENSMUSG00000038422 Hdhd3 ENSMUST00000140038 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038422 Hdhd3 ENSMUST00000037820 ENSMUSP00000036337 TRANSLATION protein_coding - CCDS18242.1 1 251.0 0.0 1.0 11.5 50.8 0.0 -4,-7 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000094793 Mup12 ENSMUST00000117932 ENSMUSP00000112787 TRANSLATION protein_coding - CCDS51192.1 1 180.0 0.0 4.88 0.0 109.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043333 Rhbdl2 ENSMUST00000148797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043333 Rhbdl2 ENSMUST00000124290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043333 Rhbdl2 ENSMUST00000106204 ENSMUSP00000101810 TRANSLATION protein_coding - CCDS38873.1 5 302.0 0.0 5.1 10.3 131.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043333 Rhbdl2 ENSMUST00000150286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043333 Rhbdl2 ENSMUST00000053202 ENSMUSP00000054546 TRANSLATION protein_coding - CCDS38873.1 5 302.0 0.0 5.1 10.3 131.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047143 Dmrta2 ENSMUST00000061187 ENSMUSP00000060441 TRANSLATION protein_coding - CCDS18469.1 1 531.0 8.0 0.6 6.6 151.3 0.0 -3,-4 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000084346 Cyp4a30b ENSMUST00000119958 ENSMUSP00000140857 TRANSLATION protein_coding - CCDS80147.1 5 508.0 30.0 10.64 4.7 394.8 0.0 -2,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000041161 Otud3 ENSMUST00000097830 ENSMUSP00000095441 TRANSLATION protein_coding - CCDS51337.1 2 396.0 0.0 3.6 9.6 38.5 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000028249 Sdcbp ENSMUST00000108374 ENSMUSP00000104011 TRANSLATION protein_coding - - 1 199.0 0.0 2.0 0.0 50.4 0.0 -4,-5 0.0009 1 2.0 MINOR ENSMUSG00000028249 Sdcbp ENSMUST00000175769 ENSMUSP00000135777 TRANSLATION protein_coding stop - 5 249.0 0.0 3.5 0.0 50.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028249 Sdcbp ENSMUST00000108371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028249 Sdcbp ENSMUST00000029912 ENSMUSP00000029912 TRANSLATION protein_coding - CCDS51110.1 1 299.0 0.0 5.0 31.9 77.5 0.0 -4,-5 0.9909 4 11.648 ALTERNATIVE:1 ENSMUSG00000028249 Sdcbp ENSMUST00000155247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028249 Sdcbp ENSMUST00000140830 ENSMUSP00000122411 TRANSLATION protein_coding stop - 5 91.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028249 Sdcbp ENSMUST00000153861 ENSMUSP00000119838 TRANSLATION protein_coding stop - 5 209.0 0.0 2.5 0.0 50.4 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000028249 Sdcbp ENSMUST00000103008 ENSMUSP00000100073 TRANSLATION protein_coding - CCDS17951.1 1 298.0 0.0 5.0 34.9 77.5 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:4 ENSMUSG00000040372 Gpr63 ENSMUST00000038920 ENSMUSP00000039312 TRANSLATION protein_coding - CCDS18008.1 1 425.0 0.0 0.2 0.1 164.7 0.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040372 Gpr63 ENSMUST00000151006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028873 Cdca8 ENSMUST00000135571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028873 Cdca8 ENSMUST00000165281 ENSMUSP00000132145 TRANSLATION protein_coding stop - 3 105.0 0.0 2.0 0.0 65.5 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000028873 Cdca8 ENSMUST00000030690 ENSMUSP00000030690 TRANSLATION protein_coding - - 1 326.0 0.0 3.15 0.0 150.7 0.0 -4,-2 0.0032 4 10.362 MINOR ENSMUSG00000028873 Cdca8 ENSMUST00000125801 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028873 Cdca8 ENSMUST00000147074 - NO_TRANSLATION retained_intron ENSMUSG00000028873 Cdca8 ENSMUST00000084296 ENSMUSP00000081319 TRANSLATION protein_coding - CCDS18631.1 1 289.0 0.0 3.65 0.1 161.3 0.0 -4,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000028417 Tal2 ENSMUST00000030124 ENSMUSP00000030124 TRANSLATION protein_coding - CCDS18192.1 1 108.0 0.0 1.0 9.0 58.0 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038047 Haus6 ENSMUST00000125481 ENSMUSP00000118609 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 37.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038047 Haus6 ENSMUST00000123432 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038047 Haus6 ENSMUST00000070607 ENSMUSP00000070504 TRANSLATION protein_coding - CCDS18307.1 1 933.0 0.0 0.0 0.3 252.9 0.0 -4,-5 1.0 14 6.0 PRINCIPAL:1 ENSMUSG00000038047 Haus6 ENSMUST00000128381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028412 Slc44a1 ENSMUST00000107651 ENSMUSP00000103278 TRANSLATION protein_coding - - 5 656.0 0.0 0.0 17.6 351.8 13.0 -4,-7 1.0 16 6.0 PRINCIPAL:3 ENSMUSG00000028412 Slc44a1 ENSMUST00000136607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028412 Slc44a1 ENSMUST00000107646 ENSMUSP00000103273 TRANSLATION protein_coding - CCDS51178.1 5 526.0 0.0 0.0 0.0 221.3 10.0 -4,-7 0.0427 12 0.0 MINOR ENSMUSG00000028412 Slc44a1 ENSMUST00000102911 ENSMUSP00000099975 TRANSLATION protein_coding - CCDS18189.1 1 653.0 0.0 0.0 6.9 351.8 13.0 -4,-7 0.6724 15 3.42 MINOR ENSMUSG00000028412 Slc44a1 ENSMUST00000133582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028412 Slc44a1 ENSMUST00000107645 ENSMUSP00000103272 TRANSLATION protein_coding - - 5 446.0 0.0 0.0 0.0 351.8 11.0 -1,-5 0.0886 4 2.0 MINOR ENSMUSG00000028412 Slc44a1 ENSMUST00000107647 ENSMUSP00000103274 TRANSLATION protein_coding - - 2 718.0 0.0 0.0 13.3 351.8 13.0 -4,-7 0.8504 15 4.964 ALTERNATIVE:1 ENSMUSG00000028943 Espn ENSMUST00000103196 ENSMUSP00000099485 TRANSLATION protein_coding - - 5 440.0 0.0 0.066 0.0 26.2 0.0 -4,-5 0.0012 2 0.6 MINOR ENSMUSG00000028943 Espn ENSMUST00000084114 ENSMUSP00000081131 TRANSLATION protein_coding - CCDS18990.1 1 533.0 0.0 0.066 0.0 26.2 0.0 -4,-5 0.0412 2 0.6 MINOR ENSMUSG00000028943 Espn ENSMUST00000030785 ENSMUSP00000030785 TRANSLATION protein_coding - CCDS18989.1 1 871.0 0.0 5.066 0.0 178.9 0.0 -4,-7 1.0 11 8.0 PRINCIPAL:2 ENSMUSG00000028943 Espn ENSMUST00000105653 ENSMUSP00000101278 TRANSLATION protein_coding - - 5 285.0 0.0 0.0 0.0 26.2 0.0 -4,-5 0.0006 2 0.6 MINOR ENSMUSG00000028943 Espn ENSMUST00000135185 ENSMUSP00000122464 TRANSLATION protein_coding start/stop - 5 700.0 0.0 4.066 0.0 138.5 0.0 -4,-5 0.0049 8 -2.0 MINOR ENSMUSG00000028943 Espn ENSMUST00000136627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028943 Espn ENSMUST00000105657 ENSMUSP00000101282 TRANSLATION protein_coding - CCDS18992.1 1 443.0 0.0 0.066 0.0 26.2 0.0 -4,-5 0.0377 2 0.6 MINOR ENSMUSG00000028943 Espn ENSMUST00000105659 ENSMUSP00000101284 TRANSLATION protein_coding - - 5 881.0 0.0 5.066 0.0 178.9 0.0 -4,-7 0.2094 10 8.0 ALTERNATIVE:2 ENSMUSG00000028943 Espn ENSMUST00000137937 - NO_TRANSLATION retained_intron ENSMUSG00000028943 Espn ENSMUST00000150958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028943 Espn ENSMUST00000070018 ENSMUSP00000065545 TRANSLATION protein_coding - CCDS18993.1 1 524.0 0.0 0.066 0.0 26.2 0.0 -4,-5 0.0412 2 0.6 MINOR ENSMUSG00000028943 Espn ENSMUST00000156517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028943 Espn ENSMUST00000105658 ENSMUSP00000101283 TRANSLATION protein_coding - - 5 848.0 0.0 5.066 0.0 178.9 0.0 -4,-7 0.1692 10 8.0 ALTERNATIVE:2 ENSMUSG00000028943 Espn ENSMUST00000080042 ENSMUSP00000078951 TRANSLATION protein_coding - CCDS18991.1 1 452.0 0.0 0.066 0.0 26.2 0.0 -4,-5 0.0377 2 0.6 MINOR ENSMUSG00000028943 Espn ENSMUST00000105654 ENSMUSP00000101279 TRANSLATION protein_coding - - 5 521.0 0.0 0.066 0.0 26.2 0.0 -4,-5 0.0034 2 0.6 MINOR ENSMUSG00000028943 Espn ENSMUST00000105655 ENSMUSP00000101280 TRANSLATION protein_coding - - 5 449.0 0.0 0.066 0.0 26.2 0.0 -4,-5 0.0012 2 0.6 MINOR ENSMUSG00000028943 Espn ENSMUST00000148075 - NO_TRANSLATION retained_intron ENSMUSG00000028943 Espn ENSMUST00000105656 ENSMUSP00000101281 TRANSLATION protein_coding - - 5 530.0 0.0 0.066 0.0 26.2 0.0 -4,-5 0.0034 2 0.6 MINOR ENSMUSG00000028943 Espn ENSMUST00000049305 ENSMUSP00000037982 TRANSLATION protein_coding - CCDS18994.1 1 253.0 0.0 0.0 0.1 26.2 0.0 -4,-5 0.037 2 0.6 MINOR ENSMUSG00000028943 Espn ENSMUST00000207676 ENSMUSP00000147144 TRANSLATION protein_coding - - 5 1405.0 0.0 5.066 0.0 178.9 0.0 -4,-7 0.3536 10 8.0 ALTERNATIVE:2 ENSMUSG00000028393 Alad ENSMUST00000107444 ENSMUSP00000103068 TRANSLATION protein_coding - CCDS18243.1 1 330.0 5.0 8.5 19.2 423.6 0.0 -4,-2 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000028393 Alad ENSMUST00000137448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028393 Alad ENSMUST00000030090 ENSMUSP00000030090 TRANSLATION protein_coding - CCDS18243.1 1 330.0 5.0 8.5 19.2 423.6 0.0 -4,-2 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000017264 Exosc10 ENSMUST00000150723 ENSMUSP00000133336 TRANSLATION nonsense_mediated_decay start - 3 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017264 Exosc10 ENSMUST00000017408 ENSMUSP00000017408 TRANSLATION protein_coding - CCDS18939.1 1 887.0 8.0 7.775 10.3 294.3 0.0 -4,-6 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000017264 Exosc10 ENSMUST00000076022 ENSMUSP00000075401 TRANSLATION protein_coding - - 1 862.0 8.0 7.775 1.0 294.3 0.0 -4,-6 0.2716 20 18.0 MINOR ENSMUSG00000017264 Exosc10 ENSMUST00000173767 - NO_TRANSLATION retained_intron ENSMUSG00000017264 Exosc10 ENSMUST00000097781 ENSMUSP00000095388 TRANSLATION nonsense_mediated_decay - - 1 618.0 8.0 7.775 0.0 294.3 0.0 -4,-6 0.0333 16 -2.0 MINOR ENSMUSG00000017264 Exosc10 ENSMUST00000173892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017264 Exosc10 ENSMUST00000173154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017264 Exosc10 ENSMUST00000126897 - NO_TRANSLATION retained_intron ENSMUSG00000028851 Nudc ENSMUST00000148612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028851 Nudc ENSMUST00000030665 ENSMUSP00000030665 TRANSLATION protein_coding - CCDS18750.1 1 332.0 0.0 2.65 11.0 185.3 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000028851 Nudc ENSMUST00000141860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028657 Ppt1 ENSMUST00000030412 ENSMUSP00000030412 TRANSLATION protein_coding - CCDS38870.1 1 306.0 7.0 8.1 8.5 679.1 0.0 2,-2 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000028657 Ppt1 ENSMUST00000097902 ENSMUSP00000095512 TRANSLATION protein_coding - - 1 197.0 5.0 4.35 0.0 367.2 0.0 2,-2 0.002 3 4.284 MINOR ENSMUSG00000028657 Ppt1 ENSMUST00000120157 ENSMUSP00000113258 TRANSLATION nonsense_mediated_decay - - 2 54.0 0.0 0.6 0.0 0.0 0.0 2,-2 0.0036 - -2.0 MINOR ENSMUSG00000028657 Ppt1 ENSMUST00000121870 ENSMUSP00000113367 TRANSLATION protein_coding - - 2 179.0 5.0 4.35 0.0 363.4 0.0 2,-2 0.002 3 4.284 MINOR ENSMUSG00000067919 Rex2 ENSMUST00000150197 - NO_TRANSLATION retained_intron ENSMUSG00000067919 Rex2 ENSMUST00000075775 ENSMUSP00000075179 TRANSLATION protein_coding - CCDS51374.1 2 685.0 60.0 1.0 0.0 401.1 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078512 Pramel11 ENSMUST00000105767 ENSMUSP00000101393 TRANSLATION protein_coding - - 5 474.0 0.0 2.1 0.0 0.0 0.0 -4,-6 0.6535 - 6.0 PRINCIPAL:1 ENSMUSG00000040859 Bsdc1 ENSMUST00000131741 - NO_TRANSLATION retained_intron ENSMUSG00000040859 Bsdc1 ENSMUST00000048162 ENSMUSP00000048742 TRANSLATION protein_coding - CCDS18692.1 1 427.0 0.0 3.0 11.0 59.8 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000040859 Bsdc1 ENSMUST00000149587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040859 Bsdc1 ENSMUST00000133083 - NO_TRANSLATION retained_intron ENSMUSG00000040859 Bsdc1 ENSMUST00000138013 ENSMUSP00000122257 TRANSLATION protein_coding stop - 2 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040859 Bsdc1 ENSMUST00000153591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040859 Bsdc1 ENSMUST00000145168 - NO_TRANSLATION retained_intron ENSMUSG00000040859 Bsdc1 ENSMUST00000154368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096700 Gm11236 ENSMUST00000180092 ENSMUSP00000136433 TRANSLATION protein_coding - - 1 360.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.6926 - 6.0 PRINCIPAL:1 ENSMUSG00000034645 Zyg11a ENSMUST00000106690 ENSMUSP00000102301 TRANSLATION protein_coding - - 5 708.0 0.0 10.5 0.0 0.0 0.0 -4,-7 0.0392 - 5.202 MINOR ENSMUSG00000034645 Zyg11a ENSMUST00000043793 ENSMUSP00000038478 TRANSLATION protein_coding - CCDS51256.1 5 706.0 0.0 10.5 0.0 0.0 0.0 -4,-7 0.2014 - 5.202 MINOR ENSMUSG00000034645 Zyg11a ENSMUST00000223127 ENSMUSP00000152477 TRANSLATION protein_coding - - 5 760.0 0.0 10.9 2.3 0.0 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000040706 Agmat ENSMUST00000038161 ENSMUSP00000040853 TRANSLATION protein_coding - CCDS38941.1 1 358.0 2.0 5.8 4.1 275.4 0.0 -3,1 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000073791 Efcab7 ENSMUST00000239517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073791 Efcab7 ENSMUST00000239520 ENSMUSP00000159401 TRANSLATION protein_coding stop - - 152.0 0.0 0.9 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000073791 Efcab7 ENSMUST00000136874 ENSMUSP00000118989 TRANSLATION protein_coding - - 2 628.0 3.0 1.164 16.7 35.1 0.0 -4,-6 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000073791 Efcab7 ENSMUST00000239516 ENSMUSP00000159398 TRANSLATION protein_coding - - - 628.0 3.0 1.164 16.7 35.1 0.0 -4,-6 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000073791 Efcab7 ENSMUST00000239518 ENSMUSP00000159399 TRANSLATION protein_coding stop - - 159.0 0.0 0.966 0.0 31.7 0.0 -4,-7 0.0033 2 -2.0 MINOR ENSMUSG00000073791 Efcab7 ENSMUST00000239521 ENSMUSP00000159402 TRANSLATION nonsense_mediated_decay - - - 64.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000073791 Efcab7 ENSMUST00000239519 ENSMUSP00000159400 TRANSLATION nonsense_mediated_decay - - - 64.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000042804 Gpr153 ENSMUST00000144035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042804 Gpr153 ENSMUST00000055754 ENSMUSP00000052742 TRANSLATION protein_coding - CCDS18996.1 1 631.0 0.0 1.4 0.4 54.0 6.0 -2,-5 0.4433 - 11.88 MINOR ENSMUSG00000042804 Gpr153 ENSMUST00000105650 ENSMUSP00000101275 TRANSLATION protein_coding - - 5 608.0 0.0 1.4 3.5 55.1 6.0 -2,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000042804 Gpr153 ENSMUST00000105651 ENSMUSP00000101276 TRANSLATION protein_coding - CCDS18996.1 5 631.0 0.0 1.4 0.4 54.0 6.0 -2,-5 0.4433 - 11.88 MINOR ENSMUSG00000028444 Cntfr ENSMUST00000145379 ENSMUSP00000115631 TRANSLATION protein_coding stop - 5 60.0 0.0 1.0 0.0 0.0 0.0 2,-2 0.0016 1 -2.0 MINOR ENSMUSG00000028444 Cntfr ENSMUST00000102962 ENSMUSP00000100027 TRANSLATION protein_coding - CCDS18067.1 1 372.0 0.0 6.0 6.5 29.8 0.0 2,-2 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000028444 Cntfr ENSMUST00000064443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028444 Cntfr ENSMUST00000084701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028444 Cntfr ENSMUST00000102961 ENSMUSP00000100026 TRANSLATION protein_coding - CCDS18067.1 1 372.0 0.0 6.0 6.5 29.8 0.0 2,-2 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000028444 Cntfr ENSMUST00000151181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028614 Ndc1 ENSMUST00000030357 ENSMUSP00000136239 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000028614 Ndc1 ENSMUST00000139560 ENSMUSP00000120365 TRANSLATION protein_coding - CCDS18438.1 1 673.0 0.0 0.0 4.2 454.2 6.0 -3,-7 1.0 14 8.0 PRINCIPAL:1 ENSMUSG00000028614 Ndc1 ENSMUST00000132950 - NO_TRANSLATION retained_intron ENSMUSG00000028614 Ndc1 ENSMUST00000149366 ENSMUSP00000137180 TRANSLATION nonsense_mediated_decay - - 5 541.0 0.0 0.0 0.0 302.4 6.0 -3,-7 0.0068 9 -2.0 MINOR ENSMUSG00000028614 Ndc1 ENSMUST00000125342 ENSMUSP00000136850 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000028614 Ndc1 ENSMUST00000150800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110947 Or10ak11 ENSMUST00000214477 ENSMUSP00000154759 TRANSLATION protein_coding - - 3 316.0 0.0 1.0 8.4 186.4 4.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000110947 Or10ak11 ENSMUST00000076019 ENSMUSP00000075398 TRANSLATION protein_coding - CCDS18563.1 - 317.0 0.0 1.0 2.4 186.4 4.0 -3,-6 0.6668 - 12.567 MINOR ENSMUSG00000025329 Padi1 ENSMUST00000026378 ENSMUSP00000026378 TRANSLATION protein_coding - CCDS18856.1 1 662.0 11.0 15.25 9.8 880.8 0.0 -4,-2 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000053317 Sec61b ENSMUST00000136685 - NO_TRANSLATION retained_intron ENSMUSG00000053317 Sec61b ENSMUST00000137461 ENSMUSP00000120880 TRANSLATION protein_coding - - 3 42.0 0.0 1.25 0.0 67.0 1.0 -4,-6 0.0399 1 11.886 MINOR ENSMUSG00000053317 Sec61b ENSMUST00000065678 ENSMUSP00000067681 TRANSLATION protein_coding - CCDS38759.1 1 96.0 0.0 1.25 33.1 68.3 1.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000053317 Sec61b ENSMUST00000125622 ENSMUSP00000114184 TRANSLATION protein_coding - - 2 42.0 0.0 1.25 0.0 67.0 1.0 -4,-6 0.0399 1 11.886 MINOR ENSMUSG00000028292 Rars2 ENSMUST00000149620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028292 Rars2 ENSMUST00000148519 ENSMUSP00000116173 TRANSLATION protein_coding stop - 3 103.0 0.0 0.2 0.0 0.0 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000028292 Rars2 ENSMUST00000142045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028292 Rars2 ENSMUST00000136563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028292 Rars2 ENSMUST00000141519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028292 Rars2 ENSMUST00000029968 ENSMUSP00000029968 TRANSLATION protein_coding - CCDS18029.1 1 578.0 10.0 9.375 25.7 396.0 0.0 -4,-1 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000028292 Rars2 ENSMUST00000155133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042202 Slc35e2 ENSMUST00000151425 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042202 Slc35e2 ENSMUST00000118607 ENSMUSP00000113189 TRANSLATION protein_coding - CCDS38995.1 1 405.0 0.0 2.441 7.4 302.8 8.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000042202 Slc35e2 ENSMUST00000105608 ENSMUSP00000101233 TRANSLATION protein_coding - CCDS38995.1 5 405.0 0.0 2.441 7.4 302.8 8.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000042202 Slc35e2 ENSMUST00000043829 ENSMUSP00000041449 TRANSLATION protein_coding - CCDS38995.1 1 405.0 0.0 2.441 7.4 302.8 8.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000040387 Klhl32 ENSMUST00000108213 - NO_TRANSLATION retained_intron ENSMUSG00000040387 Klhl32 ENSMUST00000144062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040387 Klhl32 ENSMUST00000140652 ENSMUSP00000137312 TRANSLATION nonsense_mediated_decay - - 5 139.0 0.0 2.365 0.0 99.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040387 Klhl32 ENSMUST00000150920 ENSMUSP00000135917 TRANSLATION nonsense_mediated_decay start - 5 50.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040387 Klhl32 ENSMUST00000108218 ENSMUSP00000103853 TRANSLATION protein_coding - CCDS51131.1 5 620.0 0.0 5.465 35.8 245.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040387 Klhl32 ENSMUST00000108214 ENSMUSP00000103849 TRANSLATION protein_coding - - 5 358.0 0.0 4.685 5.1 147.2 0.0 -4,-5 0.1036 - 5.044 MINOR ENSMUSG00000040387 Klhl32 ENSMUST00000084781 ENSMUSP00000081839 TRANSLATION protein_coding - CCDS38702.1 1 587.0 0.0 4.865 4.1 172.5 0.0 -4,-5 0.1503 - 6.806 MINOR ENSMUSG00000028550 Atg4c ENSMUST00000152121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028550 Atg4c ENSMUST00000030279 ENSMUSP00000030279 TRANSLATION protein_coding - CCDS18382.1 1 458.0 0.0 2.403 14.8 344.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000028550 Atg4c ENSMUST00000180278 ENSMUSP00000137035 TRANSLATION protein_coding - CCDS18382.1 5 458.0 0.0 2.403 14.8 344.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000050966 Lin28a ENSMUST00000176897 ENSMUSP00000135736 TRANSLATION protein_coding stop - 2 75.0 0.0 1.75 0.0 47.1 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000050966 Lin28a ENSMUST00000176292 ENSMUSP00000135608 TRANSLATION protein_coding stop - 2 81.0 4.0 2.25 0.0 48.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050966 Lin28a ENSMUST00000176113 ENSMUSP00000135254 TRANSLATION protein_coding stop - 5 83.0 4.0 2.25 0.0 48.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050966 Lin28a ENSMUST00000051674 ENSMUSP00000050488 TRANSLATION protein_coding - CCDS18761.1 1 209.0 8.0 4.6 17.6 84.4 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000053841 Txlna ENSMUST00000084264 ENSMUSP00000081285 TRANSLATION protein_coding - CCDS38887.1 1 554.0 0.0 8.0 7.9 392.2 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000053841 Txlna ENSMUST00000046425 ENSMUSP00000042153 TRANSLATION protein_coding - CCDS38887.1 1 554.0 0.0 8.0 7.9 392.2 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000053841 Txlna ENSMUST00000154105 ENSMUSP00000122382 TRANSLATION protein_coding stop - 5 254.0 0.0 2.0 0.0 92.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000053841 Txlna ENSMUST00000142577 - NO_TRANSLATION retained_intron ENSMUSG00000053841 Txlna ENSMUST00000133803 ENSMUSP00000117368 TRANSLATION protein_coding stop - 5 296.0 0.0 3.0 0.0 149.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000053841 Txlna ENSMUST00000130017 ENSMUSP00000117771 TRANSLATION protein_coding stop - 3 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000053841 Txlna ENSMUST00000132217 ENSMUSP00000118301 TRANSLATION protein_coding stop - 5 248.0 0.0 2.0 0.0 82.5 0.0 -4,-5 0.0003 4 -2.0 MINOR ENSMUSG00000061540 Orm2 ENSMUST00000075341 ENSMUSP00000074810 TRANSLATION protein_coding - CCDS18253.1 1 207.0 0.0 5.0 0.0 76.1 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000032643 Fhl3 ENSMUST00000038684 ENSMUSP00000040150 TRANSLATION protein_coding - CCDS38874.1 1 289.0 35.0 5.462 30.7 174.8 0.0 -4,-5 1.0 12 16.708 PRINCIPAL:3 ENSMUSG00000032643 Fhl3 ENSMUST00000145942 ENSMUSP00000121702 TRANSLATION nonsense_mediated_decay - - 5 120.0 13.0 2.198 0.0 39.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032643 Fhl3 ENSMUST00000106199 ENSMUSP00000101805 TRANSLATION protein_coding - - 5 280.0 34.0 5.33 36.9 177.6 0.0 -4,-5 0.8937 11 17.07 ALTERNATIVE:1 ENSMUSG00000039546 Ajap1 ENSMUST00000149177 ENSMUSP00000116651 TRANSLATION nonsense_mediated_decay - - 3 49.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000039546 Ajap1 ENSMUST00000105646 ENSMUSP00000101271 TRANSLATION protein_coding - CCDS38987.1 5 412.0 0.0 0.882 5.4 319.2 0.0 -2,-4 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000095048 Gm11239 ENSMUST00000171348 ENSMUSP00000125805 TRANSLATION protein_coding - - 5 360.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.6926 - 6.0 PRINCIPAL:1 ENSMUSG00000070737 Tmem35b ENSMUST00000106097 ENSMUSP00000101703 TRANSLATION protein_coding - - 2 137.0 0.0 0.48 0.0 0.0 5.0 -4,-7 0.0526 1 2.664 MINOR ENSMUSG00000070737 Tmem35b ENSMUST00000094712 ENSMUSP00000092302 TRANSLATION protein_coding - CCDS38882.1 1 150.0 0.0 1.08 0.1 0.0 5.0 3,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000073877 Gm13306 ENSMUST00000131704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073877 Gm13306 ENSMUST00000108018 ENSMUSP00000103653 TRANSLATION protein_coding - CCDS57270.1 1 135.0 0.0 2.0 0.0 30.8 0.0 -4,-2 0.1979 - 8.0 ALTERNATIVE:2 ENSMUSG00000073877 Gm13306 ENSMUST00000098122 ENSMUSP00000095726 TRANSLATION protein_coding - CCDS51149.1 1 120.0 0.0 2.0 2.7 30.8 0.0 3,-2 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000073877 Gm13306 ENSMUST00000154600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028712 Cyp4a31 ENSMUST00000141033 ENSMUSP00000115628 TRANSLATION protein_coding stop - 3 155.0 5.0 3.25 0.0 57.0 1.0 0,-3 0.0016 - -2.0 MINOR ENSMUSG00000028712 Cyp4a31 ENSMUST00000030486 ENSMUSP00000030486 TRANSLATION protein_coding - CCDS51273.1 5 509.0 30.0 12.66 7.7 441.7 1.0 0,-3 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000028712 Cyp4a31 ENSMUST00000030480 ENSMUSP00000030480 TRANSLATION protein_coding - CCDS57291.1 2 443.0 26.0 9.9375 0.4 320.8 1.0 0,-3 0.0128 - 3.888 MINOR ENSMUSG00000028712 Cyp4a31 ENSMUST00000126645 ENSMUSP00000117129 TRANSLATION protein_coding stop - 5 340.0 13.0 7.75 0.0 216.8 1.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000028518 Prkaa2 ENSMUST00000030243 ENSMUSP00000030243 TRANSLATION protein_coding - CCDS18416.1 1 552.0 18.0 7.35 26.2 243.1 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000028289 Epha7 ENSMUST00000029964 ENSMUSP00000029964 TRANSLATION protein_coding - CCDS18013.1 1 998.0 18.0 12.865 27.2 821.6 3.0 3,-2 1.0 7 18.0 PRINCIPAL:4 ENSMUSG00000028289 Epha7 ENSMUST00000108194 ENSMUSP00000103829 TRANSLATION protein_coding - - 1 626.0 0.0 5.93875 0.0 346.5 3.0 3,-2 0.0024 3 0.2 MINOR ENSMUSG00000028289 Epha7 ENSMUST00000108191 ENSMUSP00000103826 TRANSLATION protein_coding - CCDS71353.1 1 994.0 18.0 12.865 25.2 818.1 3.0 3,-2 0.9705 7 17.496 ALTERNATIVE:1 ENSMUSG00000028289 Epha7 ENSMUST00000129029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028289 Epha7 ENSMUST00000136827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028289 Epha7 ENSMUST00000080934 ENSMUSP00000079735 TRANSLATION protein_coding - CCDS51132.1 1 610.0 0.0 5.815 10.6 346.5 3.0 3,-2 0.2725 3 1.664 MINOR ENSMUSG00000028289 Epha7 ENSMUST00000149030 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028289 Epha7 ENSMUST00000129912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041025 Iffo2 ENSMUST00000174078 ENSMUSP00000134062 TRANSLATION protein_coding - CCDS57308.1 1 512.0 0.0 2.0 7.5 42.9 0.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000041025 Iffo2 ENSMUST00000040023 ENSMUSP00000039533 TRANSLATION protein_coding - CCDS18847.1 5 287.0 0.0 2.0 0.8 42.9 0.0 -4,-5 0.2877 - 12.0 MINOR ENSMUSG00000041025 Iffo2 ENSMUST00000123827 ENSMUSP00000133384 TRANSLATION protein_coding - CCDS18847.1 1 287.0 0.0 2.0 0.8 42.9 0.0 -4,-5 0.2877 - 12.0 MINOR ENSMUSG00000028497 Hacd4 ENSMUST00000151280 ENSMUSP00000122565 TRANSLATION protein_coding start - 1 252.0 0.0 2.75 0.0 119.7 5.0 -4,0 0.0656 1 -2.0 MINOR ENSMUSG00000028497 Hacd4 ENSMUST00000030221 ENSMUSP00000030221 TRANSLATION protein_coding - CCDS18317.1 1 232.0 0.0 2.75 5.3 119.7 5.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000028497 Hacd4 ENSMUST00000132493 ENSMUSP00000119411 TRANSLATION protein_coding start - 1 262.0 0.0 2.6 0.0 104.2 5.0 -4,0 0.0167 1 -2.0 MINOR ENSMUSG00000078625 Gm12789 ENSMUST00000106914 ENSMUSP00000102527 TRANSLATION protein_coding - CCDS38823.1 3 164.0 0.0 1.8 0.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078625 Gm12789 ENSMUST00000151553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044496 2510039O18Rik ENSMUST00000103232 ENSMUSP00000099522 TRANSLATION protein_coding - CCDS18925.1 1 634.0 0.0 1.165 8.5 823.9 0.0 0,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000028882 Ppp1r8 ENSMUST00000156777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028882 Ppp1r8 ENSMUST00000131725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028882 Ppp1r8 ENSMUST00000105919 ENSMUSP00000101539 TRANSLATION protein_coding - CCDS71482.1 3 350.0 0.0 3.0 24.9 59.3 0.0 -4,-5 0.9962 5 12.0 ALTERNATIVE:1 ENSMUSG00000028882 Ppp1r8 ENSMUST00000030702 ENSMUSP00000030702 TRANSLATION protein_coding - CCDS18736.1 1 351.0 0.0 3.0 24.9 59.3 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:4 ENSMUSG00000028882 Ppp1r8 ENSMUST00000148228 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006386 Tek ENSMUST00000073939 ENSMUSP00000073595 TRANSLATION protein_coding - CCDS80122.1 1 1072.0 18.0 18.6 0.0 583.8 1.0 2,-2 0.2873 11 12.002 MINOR ENSMUSG00000006386 Tek ENSMUST00000102798 ENSMUSP00000099862 TRANSLATION protein_coding - CCDS18361.1 1 1123.0 18.0 19.6 14.6 583.8 1.0 2,-2 1.0 12 18.0 PRINCIPAL:3 ENSMUSG00000006386 Tek ENSMUST00000131958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006386 Tek ENSMUST00000071168 ENSMUSP00000071162 TRANSLATION protein_coding - CCDS71421.1 1 1122.0 18.0 19.6 14.6 583.8 1.0 2,-2 0.9997 11 18.0 ALTERNATIVE:1 ENSMUSG00000028221 Pip4p2 ENSMUST00000029875 ENSMUSP00000029875 TRANSLATION protein_coding - CCDS17981.1 1 257.0 9.0 0.0 31.8 338.7 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000090125 Pou3f1 ENSMUST00000053491 ENSMUSP00000137374 TRANSLATION protein_coding - CCDS57296.1 - 449.0 0.0 0.4 1.1 190.9 0.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000038070 Cntln ENSMUST00000047023 ENSMUSP00000044138 TRANSLATION protein_coding - - 5 1397.0 0.0 3.95 0.4 0.0 0.0 -4,0 0.3957 6 6.0 ALTERNATIVE:2 ENSMUSG00000038070 Cntln ENSMUST00000107190 ENSMUSP00000102808 TRANSLATION protein_coding - - 1 262.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0442 1 0.0 MINOR ENSMUSG00000038070 Cntln ENSMUST00000169371 ENSMUSP00000130491 TRANSLATION protein_coding - CCDS51216.1 5 1396.0 0.0 3.95 0.4 0.0 0.0 -4,0 0.6648 6 6.0 ALTERNATIVE:2 ENSMUSG00000038070 Cntln ENSMUST00000102819 ENSMUSP00000099883 TRANSLATION protein_coding - CCDS18302.1 1 318.0 0.0 3.95 0.0 0.0 0.0 -4,0 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000050390 C77080 ENSMUST00000146376 ENSMUSP00000122247 TRANSLATION protein_coding stop - 3 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.078 - -2.0 MINOR ENSMUSG00000050390 C77080 ENSMUST00000052602 ENSMUSP00000062395 TRANSLATION protein_coding - CCDS18686.1 1 1070.0 0.0 0.75 0.0 0.0 0.0 -4,-5 1.0 22 6.0 PRINCIPAL:2 ENSMUSG00000050390 C77080 ENSMUST00000106051 ENSMUSP00000101666 TRANSLATION protein_coding - CCDS71474.1 1 1013.0 0.0 0.75 0.1 0.0 0.0 -4,-6 0.537 19 6.0 ALTERNATIVE:2 ENSMUSG00000050390 C77080 ENSMUST00000145261 ENSMUSP00000123245 TRANSLATION protein_coding stop - 2 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0399 - -2.0 MINOR ENSMUSG00000050390 C77080 ENSMUST00000097873 ENSMUSP00000095483 TRANSLATION protein_coding - CCDS71475.1 1 1025.0 0.0 0.75 0.1 0.0 0.0 -4,-2 0.5861 19 6.0 ALTERNATIVE:2 ENSMUSG00000028826 Maco1 ENSMUST00000136113 - NO_TRANSLATION retained_intron ENSMUSG00000028826 Maco1 ENSMUST00000137707 ENSMUSP00000124477 TRANSLATION nonsense_mediated_decay - - 1 157.0 0.0 0.0 0.0 375.2 6.0 -4,-7 0.003 - -2.0 MINOR ENSMUSG00000028826 Maco1 ENSMUST00000148595 ENSMUSP00000125440 TRANSLATION nonsense_mediated_decay - - 1 106.0 0.0 0.0 0.0 158.1 3.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028826 Maco1 ENSMUST00000030628 ENSMUSP00000030628 TRANSLATION protein_coding - CCDS18777.1 1 664.0 0.0 0.0 21.4 1115.1 6.0 -4,-7 1.0 14 10.0 PRINCIPAL:1 ENSMUSG00000028826 Maco1 ENSMUST00000150031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042380 Smim12 ENSMUST00000142029 ENSMUSP00000131941 TRANSLATION protein_coding - CCDS38883.1 1 92.0 0.0 0.8 34.9 125.3 0.0 -3,-4 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028772 Zcchc17 ENSMUST00000134159 ENSMUSP00000120807 TRANSLATION protein_coding - CCDS38891.1 1 241.0 4.0 4.1 0.0 40.0 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000028772 Zcchc17 ENSMUST00000129840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028772 Zcchc17 ENSMUST00000141615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028772 Zcchc17 ENSMUST00000167964 - NO_TRANSLATION retained_intron ENSMUSG00000028772 Zcchc17 ENSMUST00000149755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028757 Ddost ENSMUST00000030538 ENSMUSP00000030538 TRANSLATION protein_coding - CCDS18824.1 1 441.0 0.0 10.75 7.0 506.4 0.0 3,-2 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000040550 Otud6b ENSMUST00000151012 ENSMUSP00000120430 TRANSLATION nonsense_mediated_decay - - 1 110.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040550 Otud6b ENSMUST00000236953 ENSMUSP00000157661 TRANSLATION protein_coding - CCDS17980.2 - 325.0 0.0 1.125 7.4 100.1 0.0 -4,-6 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000040550 Otud6b ENSMUST00000117268 ENSMUSP00000113553 TRANSLATION protein_coding - - 1 294.0 0.0 1.125 4.3 100.1 0.0 -4,-5 0.6287 8 7.032 ALTERNATIVE:2 ENSMUSG00000059291 Rpl11 ENSMUST00000137580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059291 Rpl11 ENSMUST00000153223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059291 Rpl11 ENSMUST00000142440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059291 Rpl11 ENSMUST00000102536 ENSMUSP00000099595 TRANSLATION protein_coding - CCDS18799.1 1 178.0 0.0 4.33 29.3 151.1 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000059291 Rpl11 ENSMUST00000128733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059291 Rpl11 ENSMUST00000155873 ENSMUSP00000121108 TRANSLATION protein_coding stop - 3 172.0 0.0 4.0 0.0 151.1 0.0 -4,-5 0.0173 6 -2.0 MINOR ENSMUSG00000059291 Rpl11 ENSMUST00000147059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059291 Rpl11 ENSMUST00000133613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059291 Rpl11 ENSMUST00000150565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059291 Rpl11 ENSMUST00000125726 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000682 Cd52 ENSMUST00000000696 ENSMUSP00000000696 TRANSLATION protein_coding - CCDS38909.1 1 74.0 0.0 0.0 0.3 74.5 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000000682 Cd52 ENSMUST00000145122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000682 Cd52 ENSMUST00000137445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052117 D630039A03Rik ENSMUST00000063816 ENSMUSP00000068932 TRANSLATION protein_coding - CCDS18206.1 1 236.0 0.0 0.0 5.0 99.7 0.0 -4,-7 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000015224 Cyp2j9 ENSMUST00000055693 ENSMUSP00000050464 TRANSLATION protein_coding - CCDS18370.1 1 502.0 31.0 9.0 6.6 451.4 0.0 0,-4 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000015224 Cyp2j9 ENSMUST00000126509 - NO_TRANSLATION retained_intron ENSMUSG00000028680 Plk3 ENSMUST00000147730 ENSMUSP00000120476 TRANSLATION protein_coding start - 1 610.0 18.0 10.525 0.0 337.9 0.0 -4,-6 0.0466 - -2.0 MINOR ENSMUSG00000028680 Plk3 ENSMUST00000076859 ENSMUSP00000076130 TRANSLATION protein_coding - CCDS18529.1 1 648.0 18.0 10.525 2.9 337.9 0.0 -4,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000028680 Plk3 ENSMUST00000126135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034636 Zyg11b ENSMUST00000130508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034636 Zyg11b ENSMUST00000043616 ENSMUSP00000043844 TRANSLATION protein_coding - CCDS18448.1 1 744.0 0.0 10.35 6.4 0.0 0.0 -4,-5 1.0 18 8.0 PRINCIPAL:1 ENSMUSG00000001985 Grik3 ENSMUST00000030676 ENSMUSP00000030676 TRANSLATION protein_coding - CCDS38878.1 1 919.0 11.0 12.5 18.9 579.0 0.0 1,-3 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000028957 Per3 ENSMUST00000103204 ENSMUSP00000099493 TRANSLATION protein_coding - CCDS18978.1 1 1113.0 0.0 7.15 0.1 164.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028957 Per3 ENSMUST00000138052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028957 Per3 ENSMUST00000136398 ENSMUSP00000118950 TRANSLATION nonsense_mediated_decay - - 5 426.0 0.0 5.55 0.0 54.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028957 Per3 ENSMUST00000128283 - NO_TRANSLATION retained_intron ENSMUSG00000028957 Per3 ENSMUST00000138584 - NO_TRANSLATION retained_intron ENSMUSG00000044018 Mrpl50 ENSMUST00000057829 ENSMUSP00000062476 TRANSLATION protein_coding - CCDS18174.1 1 159.0 0.0 1.0 11.0 46.2 0.0 -4,0 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000014030 Pax5 ENSMUST00000102932 ENSMUSP00000099996 TRANSLATION protein_coding - - 5 362.0 0.0 2.85 2.1 327.3 0.0 -4,-5 0.101 2 6.76 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000173821 ENSMUSP00000134712 TRANSLATION protein_coding - - 5 328.0 0.0 2.85 2.1 247.7 0.0 -4,-5 0.0927 2 6.232 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000172866 ENSMUSP00000134119 TRANSLATION protein_coding start - 5 336.0 0.0 1.75 0.0 295.6 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000173733 ENSMUSP00000133671 TRANSLATION protein_coding - - 5 291.0 0.0 1.85 3.0 190.4 0.0 -4,-5 0.0397 1 4.314 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000187197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014030 Pax5 ENSMUST00000107827 ENSMUSP00000103458 TRANSLATION protein_coding - - 5 355.0 0.0 2.85 0.0 247.7 0.0 -4,-5 0.0307 2 6.0 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000014174 ENSMUSP00000014174 TRANSLATION protein_coding - CCDS18125.1 1 391.0 0.0 2.85 20.0 418.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000014030 Pax5 ENSMUST00000174761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014030 Pax5 ENSMUST00000172949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014030 Pax5 ENSMUST00000174242 ENSMUSP00000134391 TRANSLATION nonsense_mediated_decay - - 5 307.0 0.0 2.85 0.0 247.7 0.0 -4,-5 0.0278 2 -2.0 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000146335 ENSMUSP00000139296 TRANSLATION protein_coding stop - 5 200.0 0.0 2.75 0.0 247.9 0.0 -4,-5 0.0136 1 -2.0 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000134968 ENSMUSP00000133540 TRANSLATION protein_coding - - 5 319.0 0.0 2.85 2.1 327.3 0.0 -4,-5 0.0924 2 6.76 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000194075 ENSMUSP00000141303 TRANSLATION protein_coding start - 5 209.0 0.0 0.0 0.0 170.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000174319 ENSMUSP00000133978 TRANSLATION protein_coding start - 5 273.0 0.0 1.75 0.0 124.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000165417 ENSMUSP00000128880 TRANSLATION protein_coding - - 5 348.0 0.0 2.85 4.2 418.5 0.0 -4,-5 0.196 2 12.672 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000143235 ENSMUSP00000134370 TRANSLATION nonsense_mediated_decay - - 5 288.0 0.0 2.85 0.0 247.7 0.0 -4,-5 0.0285 2 -2.0 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000186542 ENSMUSP00000141186 TRANSLATION protein_coding stop - 5 108.0 0.0 1.16 0.0 108.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000191036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014030 Pax5 ENSMUST00000107825 ENSMUSP00000103455 TRANSLATION protein_coding - - 5 357.0 0.0 2.85 6.1 328.2 0.0 -4,-5 0.228 2 7.654 MINOR ENSMUSG00000014030 Pax5 ENSMUST00000107826 ENSMUSP00000103457 TRANSLATION protein_coding - - 5 326.0 0.0 2.85 0.0 247.7 0.0 -4,-5 0.0293 2 6.0 MINOR ENSMUSG00000121582 ENSMUSG00000121582 ENSMUST00000249255 ENSMUSP00000159635 TRANSLATION protein_coding - - - 48.0 0.0 0.0 0.0 0.0 0.0 1,-4 0.6119 - 0.0 PRINCIPAL:1 ENSMUSG00000028295 Smim8 ENSMUST00000108134 ENSMUSP00000103769 TRANSLATION protein_coding - CCDS38706.1 2 97.0 0.0 1.2 24.5 126.8 1.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028295 Smim8 ENSMUST00000108133 ENSMUSP00000103768 TRANSLATION protein_coding - CCDS38706.1 1 97.0 0.0 1.2 24.5 126.8 1.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028295 Smim8 ENSMUST00000147396 - NO_TRANSLATION retained_intron ENSMUSG00000028295 Smim8 ENSMUST00000029972 ENSMUSP00000029972 TRANSLATION protein_coding - CCDS38706.1 1 97.0 0.0 1.2 24.5 126.8 1.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028295 Smim8 ENSMUST00000131295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028295 Smim8 ENSMUST00000139922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028295 Smim8 ENSMUST00000108131 ENSMUSP00000103766 TRANSLATION protein_coding - CCDS38706.1 3 97.0 0.0 1.2 24.5 126.8 1.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028295 Smim8 ENSMUST00000108132 ENSMUSP00000103767 TRANSLATION protein_coding - CCDS38706.1 3 97.0 0.0 1.2 24.5 126.8 1.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028597 Gpx7 ENSMUST00000030332 ENSMUSP00000030332 TRANSLATION protein_coding - CCDS18450.1 1 186.0 0.0 3.5 4.3 130.4 0.0 3,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000028597 Gpx7 ENSMUST00000184609 ENSMUSP00000139335 TRANSLATION protein_coding - - 3 59.0 0.0 1.0 0.0 0.0 0.0 3,-2 0.0029 - 1.002 MINOR ENSMUSG00000073878 Gm13304 ENSMUST00000098123 ENSMUSP00000095727 TRANSLATION protein_coding - CCDS51148.1 1 133.0 0.0 2.3 6.9 83.3 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094439 Gm21969 ENSMUST00000178644 ENSMUSP00000136776 TRANSLATION nonsense_mediated_decay,RT - - 5 289.0 0.0 2.0 0.8 42.9 0.0 -4,-5 0.7264 - -2.0 PRINCIPAL:1 ENSMUSG00000066149 Cdc26 ENSMUST00000084525 ENSMUSP00000081573 TRANSLATION protein_coding - CCDS38774.1 1 85.0 0.0 0.75 26.2 0.0 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000066149 Cdc26 ENSMUST00000134727 ENSMUSP00000120496 TRANSLATION nonsense_mediated_decay - CCDS38774.1 1 85.0 0.0 0.75 26.2 0.0 0.0 -4,-5 1.0 3 -2.0 MINOR ENSMUSG00000066149 Cdc26 ENSMUST00000156854 - NO_TRANSLATION retained_intron ENSMUSG00000066149 Cdc26 ENSMUST00000107459 ENSMUSP00000103083 TRANSLATION protein_coding - CCDS38774.1 2 85.0 0.0 0.75 26.2 0.0 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000062545 Tlr12 ENSMUST00000074829 ENSMUSP00000074381 TRANSLATION protein_coding - CCDS18673.1 - 906.0 0.0 0.1 0.1 113.3 0.0 3,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000062545 Tlr12 ENSMUST00000133382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078599 Skint8 ENSMUST00000165046 ENSMUSP00000133268 TRANSLATION protein_coding - CCDS51265.1 1 398.0 0.0 2.55 0.0 36.8 3.0 0,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000078599 Skint8 ENSMUST00000129547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078599 Skint8 ENSMUST00000106572 ENSMUSP00000102182 TRANSLATION protein_coding - - 5 318.0 0.0 2.55 0.0 36.8 2.0 0,-3 0.129 - 8.0 ALTERNATIVE:2 ENSMUSG00000078599 Skint8 ENSMUST00000124862 - NO_TRANSLATION retained_intron ENSMUSG00000078599 Skint8 ENSMUST00000147395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028641 P3h1 ENSMUST00000131875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028641 P3h1 ENSMUST00000134548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028641 P3h1 ENSMUST00000102662 ENSMUSP00000099723 TRANSLATION protein_coding - CCDS18576.1 5 748.0 3.0 4.518 0.0 40.5 0.0 1,-2 0.4259 14 15.0 MINOR ENSMUSG00000028641 P3h1 ENSMUST00000030393 ENSMUSP00000030393 TRANSLATION protein_coding - CCDS71460.1 1 746.0 3.0 4.518 0.1 40.5 0.0 1,-2 0.4714 14 15.0 MINOR ENSMUSG00000028641 P3h1 ENSMUST00000126056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028641 P3h1 ENSMUST00000121111 ENSMUSP00000112504 TRANSLATION protein_coding - CCDS38859.1 1 739.0 3.0 4.518 4.0 40.5 0.0 1,-2 1.0 14 17.0 PRINCIPAL:1 ENSMUSG00000028641 P3h1 ENSMUST00000136278 ENSMUSP00000119695 TRANSLATION nonsense_mediated_decay - - 5 363.0 0.0 3.3 0.0 0.0 0.0 1,-2 0.0016 5 -2.0 MINOR ENSMUSG00000028641 P3h1 ENSMUST00000127087 - NO_TRANSLATION retained_intron ENSMUSG00000028641 P3h1 ENSMUST00000081606 ENSMUSP00000080312 TRANSLATION protein_coding - CCDS38860.1 1 560.0 3.0 3.518 0.0 40.5 0.0 -4,-5 0.0589 12 13.002 MINOR ENSMUSG00000028641 P3h1 ENSMUST00000153940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028641 P3h1 ENSMUST00000142361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028641 P3h1 ENSMUST00000123963 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000111259 Or10ak7 ENSMUST00000215312 ENSMUSP00000149039 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 9.8 179.0 7.0 -4,-5 0.8 - 10.778 ALTERNATIVE:1 ENSMUSG00000111259 Or10ak7 ENSMUST00000081960 ENSMUSP00000080626 TRANSLATION protein_coding - CCDS51287.1 - 313.0 0.0 1.0 10.5 179.0 7.0 -3,-6 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000046790 Or13p3 ENSMUST00000214131 ENSMUSP00000151040 TRANSLATION protein_coding - CCDS38855.1 5 312.0 0.0 1.0 10.4 181.3 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046790 Or13p3 ENSMUST00000215117 ENSMUSP00000149466 TRANSLATION protein_coding - CCDS38855.1 5 312.0 0.0 1.0 10.4 181.3 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046790 Or13p3 ENSMUST00000061215 ENSMUSP00000095523 TRANSLATION protein_coding - CCDS38855.1 - 312.0 0.0 1.0 10.4 181.3 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051517 Arhgef39 ENSMUST00000146781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051517 Arhgef39 ENSMUST00000154905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051517 Arhgef39 ENSMUST00000054538 ENSMUSP00000055293 TRANSLATION protein_coding - CCDS18098.1 1 344.0 0.0 6.9 0.1 107.4 0.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000051517 Arhgef39 ENSMUST00000128754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051517 Arhgef39 ENSMUST00000136005 ENSMUSP00000118144 TRANSLATION protein_coding start/stop - 5 256.0 0.0 4.35 0.0 60.5 0.0 -4,-2 0.0005 1 -2.0 MINOR ENSMUSG00000051517 Arhgef39 ENSMUST00000125834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051517 Arhgef39 ENSMUST00000129378 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051517 Arhgef39 ENSMUST00000152134 ENSMUSP00000119911 TRANSLATION protein_coding start - 3 92.0 0.0 1.9 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000051517 Arhgef39 ENSMUST00000156058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051517 Arhgef39 ENSMUST00000147124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025791 Pgm1 ENSMUST00000102783 ENSMUSP00000099844 TRANSLATION protein_coding - - 1 580.0 17.0 10.75 8.3 290.4 0.0 -4,-5 0.3496 32 18.042 MINOR ENSMUSG00000025791 Pgm1 ENSMUST00000058351 ENSMUSP00000061227 TRANSLATION protein_coding - CCDS18388.1 1 562.0 17.0 10.75 31.8 305.5 0.0 -4,-6 1.0 33 22.0 PRINCIPAL:1 ENSMUSG00000028920 Fbxo42 ENSMUST00000146768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028920 Fbxo42 ENSMUST00000030757 ENSMUSP00000030757 TRANSLATION protein_coding - CCDS18866.1 1 717.0 2.0 2.645 13.2 102.6 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000073771 Btbd19 ENSMUST00000181979 - NO_TRANSLATION retained_intron ENSMUSG00000073771 Btbd19 ENSMUST00000123346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073771 Btbd19 ENSMUST00000143213 ENSMUSP00000138246 TRANSLATION nonsense_mediated_decay - - 3 33.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000073771 Btbd19 ENSMUST00000153257 ENSMUSP00000121768 TRANSLATION nonsense_mediated_decay - - 3 57.0 0.0 0.3 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000073771 Btbd19 ENSMUST00000153924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073771 Btbd19 ENSMUST00000183310 ENSMUSP00000138230 TRANSLATION protein_coding - - 5 287.0 0.0 3.69 8.8 106.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073771 Btbd19 ENSMUST00000153303 - NO_TRANSLATION retained_intron ENSMUSG00000073771 Btbd19 ENSMUST00000097915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073771 Btbd19 ENSMUST00000125896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028960 Ube4b ENSMUST00000155968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028960 Ube4b ENSMUST00000174343 ENSMUSP00000134556 TRANSLATION nonsense_mediated_decay - - 5 409.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.002 6 -2.0 MINOR ENSMUSG00000028960 Ube4b ENSMUST00000103212 ENSMUSP00000099501 TRANSLATION protein_coding - CCDS18958.1 1 1173.0 0.0 6.49 22.7 784.1 0.0 -4,-7 1.0 25 16.0 PRINCIPAL:1 ENSMUSG00000028960 Ube4b ENSMUST00000131986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028960 Ube4b ENSMUST00000173005 - NO_TRANSLATION retained_intron ENSMUSG00000028960 Ube4b ENSMUST00000172836 ENSMUSP00000134452 TRANSLATION nonsense_mediated_decay - - 5 998.0 0.0 2.86 0.0 519.4 0.0 -4,-7 0.0149 21 -2.0 MINOR ENSMUSG00000028960 Ube4b ENSMUST00000172643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028960 Ube4b ENSMUST00000084123 - NO_TRANSLATION retained_intron ENSMUSG00000028960 Ube4b ENSMUST00000239095 ENSMUSP00000158872 TRANSLATION protein_coding - - - 1353.0 0.0 6.49 1.2 784.1 0.0 -4,-7 0.3674 25 12.036 MINOR ENSMUSG00000028960 Ube4b ENSMUST00000238439 ENSMUSP00000158654 TRANSLATION protein_coding - - - 1307.0 0.0 6.49 4.2 784.1 0.0 -4,-7 0.339 25 12.588 MINOR ENSMUSG00000028960 Ube4b ENSMUST00000136732 - NO_TRANSLATION retained_intron ENSMUSG00000028960 Ube4b ENSMUST00000153430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028960 Ube4b ENSMUST00000138181 ENSMUSP00000122020 TRANSLATION nonsense_mediated_decay start - 5 128.0 0.0 2.3 0.0 132.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028960 Ube4b ENSMUST00000138027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041530 Ago1 ENSMUST00000239428 ENSMUSP00000159361 TRANSLATION protein_coding - CCDS18653.1 - 857.0 5.0 17.43 29.9 827.6 0.0 -4,-6 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000041530 Ago1 ENSMUST00000149425 - NO_TRANSLATION retained_intron ENSMUSG00000041530 Ago1 ENSMUST00000239399 ENSMUSP00000159364 TRANSLATION protein_coding - - - 895.0 5.0 17.43 2.2 827.6 0.0 -4,-6 0.2872 - -2.0 MINOR ENSMUSG00000041530 Ago1 ENSMUST00000127800 ENSMUSP00000135662 TRANSLATION nonsense_mediated_decay start - 1 133.0 0.0 1.8 0.0 51.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041530 Ago1 ENSMUST00000097888 ENSMUSP00000095498 TRANSLATION protein_coding - CCDS18653.1 1 857.0 5.0 17.43 29.9 827.6 0.0 -4,-6 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000041530 Ago1 ENSMUST00000176315 ENSMUSP00000134871 TRANSLATION protein_coding start - 5 553.0 5.0 10.55 0.0 593.3 0.0 -4,-5 0.0033 9 -2.0 MINOR ENSMUSG00000041530 Ago1 ENSMUST00000156533 - NO_TRANSLATION retained_intron ENSMUSG00000029062 Cdk11b ENSMUST00000142513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029062 Cdk11b ENSMUST00000135550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029062 Cdk11b ENSMUST00000067081 ENSMUSP00000070527 TRANSLATION protein_coding - CCDS19033.1 1 784.0 17.0 6.8 10.3 222.7 0.0 -4,-5 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000029062 Cdk11b ENSMUST00000105598 ENSMUSP00000101223 TRANSLATION protein_coding - CCDS84837.1 1 750.0 17.0 6.8 5.6 222.7 0.0 -4,-5 0.8325 18 19.485 MINOR ENSMUSG00000029062 Cdk11b ENSMUST00000149498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029062 Cdk11b ENSMUST00000105600 ENSMUSP00000101225 TRANSLATION protein_coding - CCDS19033.1 5 784.0 17.0 6.8 10.3 222.7 0.0 -4,-5 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000029062 Cdk11b ENSMUST00000143196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029062 Cdk11b ENSMUST00000155100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028577 Plaa ENSMUST00000146118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028577 Plaa ENSMUST00000136669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028577 Plaa ENSMUST00000129748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028577 Plaa ENSMUST00000127656 ENSMUSP00000116530 TRANSLATION protein_coding start/stop - 2 214.0 0.0 3.75 0.0 144.1 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000028577 Plaa ENSMUST00000107107 ENSMUSP00000102724 TRANSLATION protein_coding - CCDS18359.1 1 794.0 0.0 9.12375 20.7 471.0 0.0 -4,-2 1.0 30 16.0 PRINCIPAL:1 ENSMUSG00000028577 Plaa ENSMUST00000135696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029029 Wrap73 ENSMUST00000030895 ENSMUSP00000030895 TRANSLATION protein_coding - CCDS19010.1 1 462.0 0.0 3.629 3.1 19.8 0.0 -4,-7 1.0 6 12.142 PRINCIPAL:1 ENSMUSG00000029029 Wrap73 ENSMUST00000142665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029029 Wrap73 ENSMUST00000146734 ENSMUSP00000118548 TRANSLATION protein_coding start/stop - 5 133.0 0.0 1.132 0.0 23.1 0.0 -4,-7 0.02 2 -2.0 MINOR ENSMUSG00000029029 Wrap73 ENSMUST00000132562 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074738 Fndc10 ENSMUST00000099265 ENSMUSP00000096871 TRANSLATION protein_coding - CCDS57321.1 - 223.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.9755 3 0.0 PRINCIPAL:1 ENSMUSG00000071014 Ndufb6 ENSMUST00000108108 ENSMUSP00000103743 TRANSLATION protein_coding - - 3 97.0 0.0 2.25 3.5 71.0 0.0 -4,-7 0.0255 3 4.378 MINOR ENSMUSG00000071014 Ndufb6 ENSMUST00000095128 ENSMUSP00000092746 TRANSLATION protein_coding - CCDS18045.1 1 128.0 0.0 3.25 27.7 175.0 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000047636 Cdcp2 ENSMUST00000221740 ENSMUSP00000152236 TRANSLATION protein_coding - - 5 540.0 13.0 4.0 7.1 314.2 0.0 3,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000047636 Cdcp2 ENSMUST00000062495 ENSMUSP00000061401 TRANSLATION protein_coding - CCDS18430.1 1 427.0 13.0 2.8 0.0 291.0 0.0 3,-1 0.055 - 14.208 MINOR ENSMUSG00000047187 Rab2a ENSMUST00000060232 ENSMUSP00000057664 TRANSLATION protein_coding - CCDS17955.1 1 212.0 22.0 6.1 35.9 211.7 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000070923 Klhl9 ENSMUST00000094993 ENSMUSP00000092602 TRANSLATION protein_coding - CCDS38800.1 - 617.0 0.0 1.0 15.0 355.2 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000028399 Ptprd ENSMUST00000174023 ENSMUSP00000133562 TRANSLATION protein_coding - - 5 1502.0 22.0 22.15 5.8 855.6 5.0 3,-2 0.3468 27 7.432 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000174531 ENSMUSP00000134229 TRANSLATION protein_coding - - 5 1495.0 22.0 21.82 5.5 861.0 5.0 3,-2 0.3099 27 7.344 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000173592 - NO_TRANSLATION retained_intron ENSMUSG00000028399 Ptprd ENSMUST00000174832 ENSMUSP00000133580 TRANSLATION protein_coding stop - 3 41.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000174831 ENSMUSP00000133328 TRANSLATION protein_coding - - 5 1505.0 22.0 22.15 4.7 854.5 5.0 3,-2 0.2474 27 7.104 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000173376 ENSMUSP00000133468 TRANSLATION protein_coding - CCDS57280.1 1 1508.0 22.0 22.15 7.7 854.5 5.0 3,-2 0.572 27 8.0 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000102834 ENSMUSP00000099898 TRANSLATION protein_coding - - 1 1254.0 22.0 17.32 0.0 720.1 5.0 -4,-6 0.0611 24 6.0 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000107289 ENSMUSP00000102910 TRANSLATION protein_coding - - 5 1912.0 22.0 25.25 5.8 1067.0 5.0 3,-2 1.0 32 15.032 PRINCIPAL:4 ENSMUSG00000028399 Ptprd ENSMUST00000050757 ENSMUSP00000058466 TRANSLATION protein_coding - - 5 1505.0 22.0 22.07 4.8 861.0 5.0 3,-2 0.259 26 7.134 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000174180 ENSMUSP00000133973 TRANSLATION protein_coding - - 5 1890.0 22.0 24.92 6.5 1065.8 5.0 3,-2 0.8815 32 14.982 ALTERNATIVE:1 ENSMUSG00000028399 Ptprd ENSMUST00000140422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028399 Ptprd ENSMUST00000138955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028399 Ptprd ENSMUST00000084467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028399 Ptprd ENSMUST00000134604 - NO_TRANSLATION retained_intron ENSMUSG00000028399 Ptprd ENSMUST00000107287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028399 Ptprd ENSMUST00000173560 - NO_TRANSLATION retained_intron ENSMUSG00000028399 Ptprd ENSMUST00000129550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028399 Ptprd ENSMUST00000212365 ENSMUSP00000148560 TRANSLATION protein_coding start/stop - 5 296.0 0.0 0.0 0.0 0.0 5.0 -4,-7 0.0048 3 -2.0 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000172811 ENSMUSP00000134190 TRANSLATION nonsense_mediated_decay start - 5 98.0 0.0 2.198 0.0 59.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000173662 ENSMUSP00000133832 TRANSLATION protein_coding start/stop - 3 271.0 0.0 1.5 0.0 66.3 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000098005 ENSMUSP00000095614 TRANSLATION protein_coding - - 5 1506.0 22.0 22.15 4.7 854.5 5.0 3,-2 0.2474 27 7.104 MINOR ENSMUSG00000028399 Ptprd ENSMUST00000156656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043411 Usp48 ENSMUST00000151807 ENSMUSP00000115526 TRANSLATION protein_coding start - 3 123.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000055131 ENSMUSP00000055016 TRANSLATION protein_coding - CCDS38924.1 1 1052.0 4.0 4.32 0.3 141.1 0.0 -4,-6 0.381 22 15.904 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000141426 ENSMUSP00000118084 TRANSLATION protein_coding start/stop - 3 156.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000125151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043411 Usp48 ENSMUST00000157012 ENSMUSP00000118081 TRANSLATION protein_coding start - 3 85.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000141628 ENSMUSP00000119691 TRANSLATION protein_coding stop - 3 267.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0012 5 -2.0 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000152985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043411 Usp48 ENSMUST00000153100 ENSMUSP00000123154 TRANSLATION protein_coding stop - 3 165.0 0.0 0.6 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000138599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043411 Usp48 ENSMUST00000105840 ENSMUSP00000101466 TRANSLATION protein_coding - CCDS84808.1 5 1036.0 4.0 4.32 19.7 142.7 0.0 -4,-6 1.0 23 20.0 PRINCIPAL:1 ENSMUSG00000043411 Usp48 ENSMUST00000105837 ENSMUSP00000101463 TRANSLATION protein_coding stop - 1 105.0 0.0 0.09 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000131755 ENSMUSP00000114800 TRANSLATION protein_coding start - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000154395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043411 Usp48 ENSMUST00000153869 ENSMUSP00000117989 TRANSLATION protein_coding start - 2 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000105838 ENSMUSP00000101464 TRANSLATION protein_coding stop - 5 106.0 0.0 0.09 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000128065 ENSMUSP00000115533 TRANSLATION protein_coding start - 2 170.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000043411 Usp48 ENSMUST00000105839 ENSMUSP00000101465 TRANSLATION protein_coding stop - 1 631.0 4.0 4.32 0.0 142.7 0.0 -4,-6 0.0321 11 -2.0 MINOR ENSMUSG00000028567 Txndc12 ENSMUST00000147581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028567 Txndc12 ENSMUST00000154017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028567 Txndc12 ENSMUST00000030296 ENSMUSP00000030296 TRANSLATION protein_coding - CCDS18457.1 1 170.0 9.0 4.75 8.3 61.7 0.0 3,-2 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000078746 Spata31f1d ENSMUST00000108026 ENSMUSP00000103661 TRANSLATION protein_coding - - 5 1308.0 0.0 0.0 0.0 122.8 0.0 -4,-5 0.9129 - 6.0 PRINCIPAL:1 ENSMUSG00000039005 Tlr4 ENSMUST00000147008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039005 Tlr4 ENSMUST00000107365 ENSMUSP00000102988 TRANSLATION protein_coding - - 1 154.0 0.0 1.5 0.0 0.0 0.0 2,-2 0.0017 1 4.5 MINOR ENSMUSG00000039005 Tlr4 ENSMUST00000143580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039005 Tlr4 ENSMUST00000048096 ENSMUSP00000045770 TRANSLATION protein_coding - CCDS18271.1 1 835.0 0.0 2.0 4.1 178.5 0.0 2,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000028836 Slc30a2 ENSMUST00000105872 ENSMUSP00000101498 TRANSLATION protein_coding - - 1 291.0 0.0 4.33 1.0 159.5 8.0 -4,-5 0.081 - 11.172 MINOR ENSMUSG00000028836 Slc30a2 ENSMUST00000105873 ENSMUSP00000101499 TRANSLATION protein_coding - - 5 322.0 0.0 3.53 2.2 90.8 7.0 -4,-7 0.082 - 5.876 MINOR ENSMUSG00000028836 Slc30a2 ENSMUST00000105874 ENSMUSP00000101500 TRANSLATION protein_coding - CCDS38915.1 1 371.0 0.0 4.53 6.7 166.6 9.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028836 Slc30a2 ENSMUST00000081094 ENSMUSP00000079875 TRANSLATION protein_coding - - 1 291.0 0.0 4.33 1.0 159.5 8.0 -4,-5 0.081 - 11.172 MINOR ENSMUSG00000039813 Tbc1d2 ENSMUST00000084621 ENSMUSP00000081670 TRANSLATION protein_coding - CCDS18155.1 1 922.0 9.0 4.2 0.1 219.7 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000039813 Tbc1d2 ENSMUST00000107750 ENSMUSP00000103379 TRANSLATION protein_coding - - 1 242.0 9.0 1.8 0.0 44.5 0.0 -4,-5 0.0 3 7.2 MINOR ENSMUSG00000028431 Elp1 ENSMUST00000030140 ENSMUSP00000030140 TRANSLATION protein_coding - CCDS38765.1 1 1333.0 0.0 10.95 11.1 1019.3 0.0 -4,-7 1.0 35 15.0 PRINCIPAL:1 ENSMUSG00000028431 Elp1 ENSMUST00000140595 - NO_TRANSLATION retained_intron ENSMUSG00000028431 Elp1 ENSMUST00000171411 - NO_TRANSLATION retained_intron ENSMUSG00000028431 Elp1 ENSMUST00000150002 - NO_TRANSLATION retained_intron ENSMUSG00000028431 Elp1 ENSMUST00000126441 - NO_TRANSLATION retained_intron ENSMUSG00000028431 Elp1 ENSMUST00000139445 - NO_TRANSLATION retained_intron ENSMUSG00000028578 Caap1 ENSMUST00000153294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028578 Caap1 ENSMUST00000030313 ENSMUSP00000030313 TRANSLATION protein_coding - CCDS18358.1 1 356.0 0.0 0.0 0.4 96.3 0.0 -4,-7 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000028700 Pomgnt1 ENSMUST00000121052 ENSMUSP00000112911 TRANSLATION protein_coding - CCDS18506.1 5 660.0 10.0 16.0 17.7 252.9 3.0 -4,-6 1.0 7 21.988 PRINCIPAL:1 ENSMUSG00000028700 Pomgnt1 ENSMUST00000133838 - NO_TRANSLATION retained_intron ENSMUSG00000028700 Pomgnt1 ENSMUST00000151325 - NO_TRANSLATION retained_intron ENSMUSG00000028700 Pomgnt1 ENSMUST00000106498 ENSMUSP00000102107 TRANSLATION protein_coding - CCDS18506.1 1 660.0 10.0 16.0 17.7 252.9 3.0 -4,-6 1.0 7 21.988 PRINCIPAL:1 ENSMUSG00000028700 Pomgnt1 ENSMUST00000155718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028700 Pomgnt1 ENSMUST00000147612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028700 Pomgnt1 ENSMUST00000106496 ENSMUSP00000102105 TRANSLATION protein_coding - CCDS18507.1 1 627.0 10.0 15.0 0.0 253.1 3.0 -4,-6 0.0664 6 16.002 MINOR ENSMUSG00000028700 Pomgnt1 ENSMUST00000127426 - NO_TRANSLATION retained_intron ENSMUSG00000028700 Pomgnt1 ENSMUST00000106494 ENSMUSP00000102103 TRANSLATION protein_coding - CCDS71450.1 1 638.0 10.0 16.0 2.4 253.1 1.0 -4,-7 0.3779 7 18.336 MINOR ENSMUSG00000028700 Pomgnt1 ENSMUST00000144311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028700 Pomgnt1 ENSMUST00000136855 - NO_TRANSLATION retained_intron ENSMUSG00000028700 Pomgnt1 ENSMUST00000120083 ENSMUSP00000112751 TRANSLATION protein_coding - CCDS18506.1 5 660.0 10.0 16.0 17.7 252.9 3.0 -4,-6 1.0 7 21.988 PRINCIPAL:1 ENSMUSG00000036905 C1qb ENSMUST00000046384 ENSMUSP00000040246 TRANSLATION protein_coding - CCDS18810.1 1 253.0 0.0 1.0 6.1 149.5 0.0 3,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000029064 Gnb1 ENSMUST00000176308 - NO_TRANSLATION retained_intron ENSMUSG00000029064 Gnb1 ENSMUST00000175688 - NO_TRANSLATION retained_intron ENSMUSG00000029064 Gnb1 ENSMUST00000176637 ENSMUSP00000135091 TRANSLATION protein_coding - CCDS19030.1 1 340.0 0.0 9.0 36.9 165.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029064 Gnb1 ENSMUST00000177094 ENSMUSP00000135492 TRANSLATION protein_coding stop - 3 273.0 0.0 7.0 0.0 120.9 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000029064 Gnb1 ENSMUST00000105616 ENSMUSP00000101241 TRANSLATION protein_coding - CCDS19030.1 1 340.0 0.0 9.0 36.9 165.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029064 Gnb1 ENSMUST00000176411 ENSMUSP00000135769 TRANSLATION protein_coding stop - 3 108.0 0.0 3.25 0.0 27.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029064 Gnb1 ENSMUST00000175705 - NO_TRANSLATION retained_intron ENSMUSG00000029064 Gnb1 ENSMUST00000030940 ENSMUSP00000030940 TRANSLATION protein_coding - CCDS19030.1 1 340.0 0.0 9.0 36.9 165.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029064 Gnb1 ENSMUST00000165335 ENSMUSP00000130123 TRANSLATION protein_coding - CCDS19030.1 1 340.0 0.0 9.0 36.9 165.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000066151 Fkbp15 ENSMUST00000084528 ENSMUSP00000081576 TRANSLATION protein_coding - - 1 756.0 0.0 2.832 0.0 69.5 0.0 -4,-5 0.7917 13 8.0 ALTERNATIVE:2 ENSMUSG00000066151 Fkbp15 ENSMUST00000084527 ENSMUSP00000081575 TRANSLATION protein_coding - CCDS51201.1 1 1216.0 0.0 2.832 0.0 69.5 0.0 -4,-5 0.7923 22 8.0 PRINCIPAL:3 ENSMUSG00000066151 Fkbp15 ENSMUST00000139308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066151 Fkbp15 ENSMUST00000107461 ENSMUSP00000103085 TRANSLATION protein_coding - - 1 650.0 0.0 2.232 0.0 69.5 0.0 -4,-5 0.0442 9 6.728 MINOR ENSMUSG00000066151 Fkbp15 ENSMUST00000239461 ENSMUSP00000159322 TRANSLATION protein_coding start - - 1044.0 0.0 2.582 0.0 55.6 0.0 -4,-5 0.0163 19 -2.0 MINOR ENSMUSG00000066151 Fkbp15 ENSMUST00000131977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066151 Fkbp15 ENSMUST00000098033 ENSMUSP00000095641 TRANSLATION protein_coding - - 1 644.0 0.0 2.1 0.0 69.5 0.0 -4,-5 0.0424 8 6.452 MINOR ENSMUSG00000028989 Angptl7 ENSMUST00000030840 ENSMUSP00000030840 TRANSLATION protein_coding - CCDS18938.1 1 337.0 6.0 3.366 1.4 239.1 0.0 2,-1 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000028617 Lrrc42 ENSMUST00000030360 ENSMUSP00000030360 TRANSLATION protein_coding - CCDS18434.1 1 421.0 0.0 0.0 10.5 35.4 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000028617 Lrrc42 ENSMUST00000142657 - NO_TRANSLATION retained_intron ENSMUSG00000028617 Lrrc42 ENSMUST00000144176 ENSMUSP00000120501 TRANSLATION protein_coding start/stop - 3 114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000028617 Lrrc42 ENSMUST00000156771 ENSMUSP00000116709 TRANSLATION protein_coding stop - 5 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000028617 Lrrc42 ENSMUST00000137837 - NO_TRANSLATION retained_intron ENSMUSG00000028849 Map7d1 ENSMUST00000125981 ENSMUSP00000120292 TRANSLATION protein_coding start - 1 591.0 0.0 1.3 0.0 130.6 0.0 -4,-2 0.1179 13 -2.0 MINOR ENSMUSG00000028849 Map7d1 ENSMUST00000131579 - NO_TRANSLATION retained_intron ENSMUSG00000028849 Map7d1 ENSMUST00000137382 - NO_TRANSLATION retained_intron ENSMUSG00000028849 Map7d1 ENSMUST00000061143 ENSMUSP00000054338 TRANSLATION protein_coding - CCDS18646.1 1 846.0 0.0 1.3 0.4 130.6 0.0 -4,-6 1.0 19 6.0 PRINCIPAL:2 ENSMUSG00000028849 Map7d1 ENSMUST00000122129 ENSMUSP00000113250 TRANSLATION protein_coding - CCDS84793.1 5 814.0 0.0 1.3 0.4 130.6 0.0 -4,-6 0.5324 19 6.0 ALTERNATIVE:2 ENSMUSG00000028849 Map7d1 ENSMUST00000106132 ENSMUSP00000101738 TRANSLATION protein_coding - CCDS51302.1 2 774.0 0.0 1.3 0.4 130.6 0.0 -4,-6 0.4176 16 6.0 ALTERNATIVE:2 ENSMUSG00000028430 Nol6 ENSMUST00000030138 ENSMUSP00000030138 TRANSLATION protein_coding - CCDS38715.1 1 1152.0 0.0 9.304 0.0 142.3 0.0 -4,-6 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000028430 Nol6 ENSMUST00000155315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028430 Nol6 ENSMUST00000129112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028430 Nol6 ENSMUST00000135059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094595 Fsbp ENSMUST00000180239 ENSMUSP00000137082 TRANSLATION protein_coding - CCDS57263.1 1 299.0 0.0 0.0 22.7 73.9 0.0 -4,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000011257 Pabpc4 ENSMUST00000106241 ENSMUSP00000101848 TRANSLATION protein_coding - - 5 644.0 0.0 10.264 10.7 407.2 0.0 -4,-5 0.7028 15 13.592 MINOR ENSMUSG00000011257 Pabpc4 ENSMUST00000078734 ENSMUSP00000077794 TRANSLATION protein_coding - CCDS18615.1 1 615.0 0.0 10.264 7.9 407.2 0.0 -4,-5 0.5832 14 13.132 MINOR ENSMUSG00000011257 Pabpc4 ENSMUST00000106243 ENSMUSP00000101850 TRANSLATION protein_coding - - 5 631.0 0.0 10.264 25.4 407.2 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000011257 Pabpc4 ENSMUST00000146156 - NO_TRANSLATION retained_intron ENSMUSG00000011257 Pabpc4 ENSMUST00000156807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011257 Pabpc4 ENSMUST00000124991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011257 Pabpc4 ENSMUST00000183940 ENSMUSP00000139135 TRANSLATION nonsense_mediated_decay - - 1 168.0 0.0 3.0 0.0 150.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000011257 Pabpc4 ENSMUST00000080178 ENSMUSP00000079070 TRANSLATION protein_coding - CCDS18614.1 1 660.0 0.0 10.264 10.7 407.2 0.0 -4,-5 0.8118 15 13.592 MINOR ENSMUSG00000039911 Spsb1 ENSMUST00000135896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039911 Spsb1 ENSMUST00000038562 ENSMUSP00000048969 TRANSLATION protein_coding - CCDS18966.1 1 273.0 0.0 3.5 35.7 111.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039911 Spsb1 ENSMUST00000156897 ENSMUSP00000119558 TRANSLATION protein_coding stop - 3 201.0 0.0 1.5 0.0 46.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039911 Spsb1 ENSMUST00000149360 ENSMUSP00000117083 TRANSLATION protein_coding stop - 2 38.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039911 Spsb1 ENSMUST00000105684 ENSMUSP00000101309 TRANSLATION protein_coding - CCDS18966.1 1 273.0 0.0 3.5 35.7 111.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039911 Spsb1 ENSMUST00000105685 ENSMUSP00000101310 TRANSLATION protein_coding - CCDS18966.1 1 273.0 0.0 3.5 35.7 111.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039911 Spsb1 ENSMUST00000149743 ENSMUSP00000116808 TRANSLATION protein_coding stop - 2 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039911 Spsb1 ENSMUST00000125135 ENSMUSP00000115149 TRANSLATION protein_coding stop - 3 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039911 Spsb1 ENSMUST00000167342 ENSMUSP00000128004 TRANSLATION protein_coding stop - 5 39.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039911 Spsb1 ENSMUST00000156451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054000 Tusc1 ENSMUST00000066774 ENSMUSP00000069652 TRANSLATION protein_coding - CCDS18357.1 - 205.0 0.0 0.16 2.8 0.0 0.0 -4,-7 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000028979 Masp2 ENSMUST00000154898 - NO_TRANSLATION retained_intron ENSMUSG00000028979 Masp2 ENSMUST00000105701 ENSMUSP00000101326 TRANSLATION protein_coding - CCDS18942.1 1 185.0 11.0 3.0 3.3 83.2 0.0 4,-1 0.4511 3 1.0 MINOR ENSMUSG00000028979 Masp2 ENSMUST00000052060 ENSMUSP00000049729 TRANSLATION protein_coding - CCDS18941.1 1 685.0 20.0 9.5 2.2 465.3 0.0 4,-1 1.0 10 18.522 PRINCIPAL:1 ENSMUSG00000028979 Masp2 ENSMUST00000136647 - NO_TRANSLATION retained_intron ENSMUSG00000028397 Kdm4c ENSMUST00000077851 ENSMUSP00000077017 TRANSLATION protein_coding - CCDS18287.1 1 1054.0 15.0 7.5 8.1 363.8 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000028397 Kdm4c ENSMUST00000150439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028397 Kdm4c ENSMUST00000148753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028397 Kdm4c ENSMUST00000156065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028397 Kdm4c ENSMUST00000030102 ENSMUSP00000030102 TRANSLATION protein_coding - CCDS18287.1 1 1054.0 15.0 7.5 8.1 363.8 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000028397 Kdm4c ENSMUST00000149295 ENSMUSP00000118728 TRANSLATION protein_coding stop - 3 149.0 0.0 2.0 0.0 39.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028876 Epha10 ENSMUST00000151791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028876 Epha10 ENSMUST00000059343 ENSMUSP00000050810 TRANSLATION protein_coding - CCDS18630.1 1 292.0 0.0 2.75 1.0 223.0 0.0 -1,-4 0.5193 - 0.0 PRINCIPAL:1 ENSMUSG00000028876 Epha10 ENSMUST00000149146 ENSMUSP00000118801 TRANSLATION protein_coding start - 5 862.0 16.0 8.968 0.0 518.4 0.0 -4,-6 0.2625 7 -2.0 MINOR ENSMUSG00000066688 Pramel21 ENSMUST00000105773 ENSMUSP00000101399 TRANSLATION protein_coding - - 5 482.0 0.0 2.1 0.0 0.0 0.0 -4,-6 0.6535 - 6.0 PRINCIPAL:1 ENSMUSG00000063851 Rnf183 ENSMUST00000079420 ENSMUSP00000078389 TRANSLATION protein_coding - CCDS38775.1 - 190.0 8.0 0.0 14.6 40.5 1.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000063851 Rnf183 ENSMUST00000107454 ENSMUSP00000103078 TRANSLATION protein_coding - CCDS38775.1 3 190.0 8.0 0.0 14.6 40.5 1.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000063851 Rnf183 ENSMUST00000107455 ENSMUSP00000103079 TRANSLATION protein_coding - CCDS38775.1 3 190.0 8.0 0.0 14.6 40.5 1.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000070890 Pramel19 ENSMUST00000052027 ENSMUSP00000051550 TRANSLATION protein_coding - CCDS51242.1 5 483.0 0.0 2.2 0.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000110970 Or13c7b ENSMUST00000214843 ENSMUSP00000150717 TRANSLATION protein_coding - CCDS18113.1 5 318.0 0.0 1.0 12.5 197.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000110970 Or13c7b ENSMUST00000215406 ENSMUSP00000148995 TRANSLATION protein_coding - CCDS18113.1 5 318.0 0.0 1.0 12.5 197.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000110970 Or13c7b ENSMUST00000079234 ENSMUSP00000078226 TRANSLATION protein_coding - CCDS18113.1 5 318.0 0.0 1.0 12.5 197.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000110970 Or13c7b ENSMUST00000079465 ENSMUSP00000078431 TRANSLATION protein_coding - CCDS18113.1 - 318.0 0.0 1.0 12.5 197.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095341 Gm428 ENSMUST00000084475 ENSMUSP00000081515 TRANSLATION protein_coding - CCDS38785.1 1 360.0 0.0 0.8 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045349 Sh2d5 ENSMUST00000105823 ENSMUSP00000101449 TRANSLATION protein_coding - CCDS51335.1 1 429.0 0.0 -0.35 9.9 0.0 0.0 -4,0 1.0 11 3.0 PRINCIPAL:1 ENSMUSG00000045349 Sh2d5 ENSMUST00000124239 ENSMUSP00000119052 TRANSLATION protein_coding stop - 3 195.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0604 6 -2.0 MINOR ENSMUSG00000045349 Sh2d5 ENSMUST00000154421 - NO_TRANSLATION retained_intron ENSMUSG00000045349 Sh2d5 ENSMUST00000139033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045349 Sh2d5 ENSMUST00000105824 ENSMUSP00000101450 TRANSLATION protein_coding - CCDS51335.1 1 429.0 0.0 -0.35 9.9 0.0 0.0 -4,0 1.0 11 3.0 PRINCIPAL:1 ENSMUSG00000028976 Slc2a5 ENSMUST00000132426 - NO_TRANSLATION retained_intron ENSMUSG00000028976 Slc2a5 ENSMUST00000030826 ENSMUSP00000030826 TRANSLATION protein_coding - CCDS18968.1 1 501.0 0.0 10.948 4.2 456.1 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000028976 Slc2a5 ENSMUST00000151504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028976 Slc2a5 ENSMUST00000136610 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045672 Col27a1 ENSMUST00000148751 - NO_TRANSLATION retained_intron ENSMUSG00000045672 Col27a1 ENSMUST00000125504 - NO_TRANSLATION retained_intron ENSMUSG00000045672 Col27a1 ENSMUST00000149856 - NO_TRANSLATION retained_intron ENSMUSG00000045672 Col27a1 ENSMUST00000151992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045672 Col27a1 ENSMUST00000036300 ENSMUSP00000043816 TRANSLATION protein_coding - CCDS18250.1 1 1845.0 0.0 22.276 0.1 455.4 0.0 0,-4 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000045672 Col27a1 ENSMUST00000184067 ENSMUSP00000139173 TRANSLATION nonsense_mediated_decay - - 5 943.0 0.0 18.201 0.0 245.6 0.0 -4,-7 0.0067 - -2.0 MINOR ENSMUSG00000045672 Col27a1 ENSMUST00000183913 ENSMUSP00000139182 TRANSLATION nonsense_mediated_decay start - 1 448.0 0.0 10.814 0.0 178.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039492 Ccdc27 ENSMUST00000047207 ENSMUSP00000039642 TRANSLATION protein_coding - CCDS19008.1 1 639.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.911 7 0.0 PRINCIPAL:1 ENSMUSG00000045589 Frrs1l ENSMUST00000053681 ENSMUSP00000052507 TRANSLATION protein_coding - CCDS51179.1 1 293.0 0.0 4.0 3.5 86.2 0.0 3,-2 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000045589 Frrs1l ENSMUST00000128276 ENSMUSP00000121657 TRANSLATION nonsense_mediated_decay start - 1 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000048485 Zbtb8b ENSMUST00000053042 ENSMUSP00000058157 TRANSLATION protein_coding - CCDS18691.1 1 484.0 8.0 0.9 2.7 148.5 0.0 -4,-5 1.0 - 13.908 PRINCIPAL:4 ENSMUSG00000048485 Zbtb8b ENSMUST00000106046 ENSMUSP00000101661 TRANSLATION protein_coding - - 1 517.0 8.0 1.1 0.4 148.5 0.0 -4,-1 0.7814 - 14.0 ALTERNATIVE:2 ENSMUSG00000048485 Zbtb8b ENSMUST00000124364 - NO_TRANSLATION retained_intron ENSMUSG00000048485 Zbtb8b ENSMUST00000132556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078598 Skint5 ENSMUST00000169631 ENSMUSP00000132470 TRANSLATION protein_coding - - 1 1475.0 0.0 2.62 0.0 48.0 3.0 -4,-7 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000078598 Skint5 ENSMUST00000153413 - NO_TRANSLATION retained_intron ENSMUSG00000078598 Skint5 ENSMUST00000170105 ENSMUSP00000129582 TRANSLATION protein_coding - - 1 1454.0 0.0 2.62 0.0 48.0 3.0 -4,-7 0.515 - 8.0 ALTERNATIVE:2 ENSMUSG00000078598 Skint5 ENSMUST00000171627 ENSMUSP00000130639 TRANSLATION protein_coding stop - 5 519.0 0.0 2.62 0.0 48.0 1.0 1,-4 0.1764 - -2.0 MINOR ENSMUSG00000041202 Pla2g2d ENSMUST00000105806 ENSMUSP00000101432 TRANSLATION protein_coding - CCDS84811.1 1 118.0 6.0 3.0 0.1 120.3 0.0 -4,-5 0.0322 - 16.752 MINOR ENSMUSG00000041202 Pla2g2d ENSMUST00000030528 ENSMUSP00000030528 TRANSLATION protein_coding - CCDS18833.1 1 144.0 6.0 3.4 7.7 127.8 0.0 3,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000028794 A3galt2 ENSMUST00000030585 ENSMUSP00000030585 TRANSLATION protein_coding - CCDS18675.1 1 370.0 4.0 2.0 0.0 361.7 1.0 -4,-6 0.2315 - 16.0 MINOR ENSMUSG00000028794 A3galt2 ENSMUST00000106077 ENSMUSP00000101687 TRANSLATION protein_coding - - 5 339.0 4.0 2.0 6.3 361.7 1.0 -3,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028863 Meaf6 ENSMUST00000055213 ENSMUSP00000053543 TRANSLATION protein_coding - CCDS18637.1 1 192.0 0.0 0.0 1.4 0.0 0.0 -4,-6 0.31 4 0.064 MINOR ENSMUSG00000028863 Meaf6 ENSMUST00000155212 - NO_TRANSLATION retained_intron ENSMUSG00000028863 Meaf6 ENSMUST00000184118 ENSMUSP00000139156 TRANSLATION nonsense_mediated_decay start - 3 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0108 2 -2.0 MINOR ENSMUSG00000028863 Meaf6 ENSMUST00000124154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028863 Meaf6 ENSMUST00000152816 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028863 Meaf6 ENSMUST00000154689 ENSMUSP00000122288 TRANSLATION protein_coding - CCDS71467.1 1 191.0 0.0 0.0 25.3 0.0 0.0 -4,-6 1.0 4 4.0 PRINCIPAL:1 ENSMUSG00000028863 Meaf6 ENSMUST00000184205 ENSMUSP00000138973 TRANSLATION nonsense_mediated_decay - - 1 181.0 0.0 0.0 2.5 0.0 0.0 -4,-6 0.1269 4 -2.0 MINOR ENSMUSG00000028863 Meaf6 ENSMUST00000106171 ENSMUSP00000101777 TRANSLATION protein_coding start - 2 173.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.0878 2 -2.0 MINOR ENSMUSG00000039634 Zfp189 ENSMUST00000042964 ENSMUSP00000036663 TRANSLATION protein_coding - CCDS18175.1 2 608.0 64.0 0.8 9.8 391.7 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000039634 Zfp189 ENSMUST00000107696 ENSMUSP00000103324 TRANSLATION protein_coding - CCDS18175.1 1 608.0 64.0 0.8 9.8 391.7 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000057722 Lepr ENSMUST00000128948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057722 Lepr ENSMUST00000037552 ENSMUSP00000037385 TRANSLATION protein_coding - CCDS51240.1 1 1162.0 0.0 5.602 9.6 72.1 3.0 -1,-5 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000057722 Lepr ENSMUST00000151733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057722 Lepr ENSMUST00000102777 ENSMUSP00000099838 TRANSLATION protein_coding - CCDS18397.1 1 892.0 0.0 5.602 7.2 72.1 3.0 -1,-5 0.7875 5 10.163 ALTERNATIVE:1 ENSMUSG00000057722 Lepr ENSMUST00000106921 ENSMUSP00000102534 TRANSLATION protein_coding - CCDS51239.1 1 894.0 0.0 5.602 9.4 72.1 3.0 -1,-5 0.9111 5 10.931 ALTERNATIVE:1 ENSMUSG00000057722 Lepr ENSMUST00000145024 ENSMUSP00000123654 TRANSLATION protein_coding stop - 5 30.0 0.0 0.0 0.0 0.0 1.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000057722 Lepr ENSMUST00000156402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062585 Cnr2 ENSMUST00000097843 ENSMUSP00000095454 TRANSLATION protein_coding - CCDS18793.1 1 347.0 0.0 1.0 2.2 122.4 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000062585 Cnr2 ENSMUST00000068830 ENSMUSP00000069957 TRANSLATION protein_coding - CCDS18793.1 1 347.0 0.0 1.0 2.2 122.4 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000037306 Man1c1 ENSMUST00000176606 - NO_TRANSLATION retained_intron ENSMUSG00000037306 Man1c1 ENSMUST00000054096 ENSMUSP00000050979 TRANSLATION protein_coding - CCDS18776.1 5 625.0 0.0 10.35 4.0 482.7 0.0 -3,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000078747 Gm20878 ENSMUST00000151103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078747 Gm20878 ENSMUST00000108028 ENSMUSP00000103663 TRANSLATION protein_coding - - 5 103.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.044 - 6.0 MINOR ENSMUSG00000078747 Gm20878 ENSMUST00000153997 ENSMUSP00000116356 TRANSLATION protein_coding - CCDS57268.1 2 87.0 0.0 1.25 6.4 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000078747 Gm20878 ENSMUST00000108027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078747 Gm20878 ENSMUST00000155656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078747 Gm20878 ENSMUST00000181518 ENSMUSP00000137739 TRANSLATION protein_coding - CCDS57268.1 1 87.0 0.0 1.25 6.4 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000078747 Gm20878 ENSMUST00000145219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078747 Gm20878 ENSMUST00000123767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028222 Calb1 ENSMUST00000141336 - NO_TRANSLATION retained_intron ENSMUSG00000028222 Calb1 ENSMUST00000029876 ENSMUSP00000029876 TRANSLATION protein_coding - CCDS17984.1 1 261.0 18.0 7.5 27.8 69.7 0.0 -4,-6 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000028222 Calb1 ENSMUST00000136266 - NO_TRANSLATION retained_intron ENSMUSG00000037295 Ldlrap1 ENSMUST00000037828 ENSMUSP00000036749 TRANSLATION protein_coding - CCDS51327.1 1 308.0 0.0 4.2 14.4 65.9 0.0 -4,-1 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000037295 Ldlrap1 ENSMUST00000140678 - NO_TRANSLATION retained_intron ENSMUSG00000037295 Ldlrap1 ENSMUST00000148479 - NO_TRANSLATION retained_intron ENSMUSG00000028830 AU040320 ENSMUST00000102607 ENSMUSP00000099667 TRANSLATION protein_coding - CCDS18660.1 1 1085.0 5.0 15.0 0.0 0.0 2.0 -4,-7 0.3417 16 11.0 MINOR ENSMUSG00000028830 AU040320 ENSMUST00000155341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028830 AU040320 ENSMUST00000047431 ENSMUSP00000037802 TRANSLATION protein_coding - CCDS18661.1 1 1048.0 5.0 15.0 4.3 0.0 2.0 -4,-7 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000028830 AU040320 ENSMUST00000148935 ENSMUSP00000117842 TRANSLATION protein_coding stop - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.017 - -2.0 MINOR ENSMUSG00000028830 AU040320 ENSMUST00000102608 ENSMUSP00000099668 TRANSLATION protein_coding - CCDS18660.1 1 1085.0 5.0 15.0 0.0 0.0 2.0 -4,-7 0.3417 16 11.0 MINOR ENSMUSG00000028830 AU040320 ENSMUST00000141918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028830 AU040320 ENSMUST00000125225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028830 AU040320 ENSMUST00000131900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028830 AU040320 ENSMUST00000132660 ENSMUSP00000119146 TRANSLATION protein_coding stop - 2 92.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.017 - -2.0 MINOR ENSMUSG00000028830 AU040320 ENSMUST00000136035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028830 AU040320 ENSMUST00000154640 ENSMUSP00000122352 TRANSLATION protein_coding stop - 3 124.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.017 - -2.0 MINOR ENSMUSG00000028238 Atp6v0d2 ENSMUST00000128605 ENSMUSP00000123599 TRANSLATION protein_coding stop - 5 36.0 0.0 0.93 0.0 28.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028238 Atp6v0d2 ENSMUST00000029900 ENSMUSP00000029900 TRANSLATION protein_coding - CCDS17994.1 1 350.0 0.0 7.78 18.6 366.3 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000061894 Zscan20 ENSMUST00000151226 - NO_TRANSLATION retained_intron ENSMUSG00000061894 Zscan20 ENSMUST00000135309 ENSMUSP00000119338 TRANSLATION nonsense_mediated_decay - - 1 300.0 0.0 1.33 0.0 133.9 0.0 -4,-5 0.0015 1 -2.0 MINOR ENSMUSG00000061894 Zscan20 ENSMUST00000147876 ENSMUSP00000121315 TRANSLATION protein_coding stop - 2 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061894 Zscan20 ENSMUST00000097877 ENSMUSP00000095487 TRANSLATION protein_coding - CCDS18672.2 1 1030.0 35.0 2.13 0.1 454.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000061894 Zscan20 ENSMUST00000084276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061894 Zscan20 ENSMUST00000141040 ENSMUSP00000123585 TRANSLATION protein_coding stop - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028886 Eya3 ENSMUST00000127682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028886 Eya3 ENSMUST00000157029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028886 Eya3 ENSMUST00000180250 ENSMUSP00000136812 TRANSLATION protein_coding - CCDS18731.1 5 416.0 4.0 6.0 0.0 0.0 0.0 -4,-5 0.1188 4 10.0 MINOR ENSMUSG00000028886 Eya3 ENSMUST00000020197 ENSMUSP00000020197 TRANSLATION protein_coding - CCDS18731.1 5 416.0 4.0 6.0 0.0 0.0 0.0 -4,-5 0.1188 4 10.0 MINOR ENSMUSG00000028886 Eya3 ENSMUST00000135299 ENSMUSP00000123045 TRANSLATION protein_coding stop - 5 302.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0251 1 -2.0 MINOR ENSMUSG00000028886 Eya3 ENSMUST00000130833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028886 Eya3 ENSMUST00000153809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028886 Eya3 ENSMUST00000145668 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028886 Eya3 ENSMUST00000142301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028886 Eya3 ENSMUST00000142998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028886 Eya3 ENSMUST00000081726 ENSMUSP00000080425 TRANSLATION protein_coding - CCDS18729.1 1 526.0 4.0 6.0 16.9 0.0 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000028886 Eya3 ENSMUST00000079157 ENSMUSP00000078157 TRANSLATION protein_coding - CCDS18730.1 1 510.0 4.0 6.0 1.1 0.0 0.0 -4,-5 0.3181 4 10.024 MINOR ENSMUSG00000028886 Eya3 ENSMUST00000134868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046861 Hectd3 ENSMUST00000133234 - NO_TRANSLATION retained_intron ENSMUSG00000046861 Hectd3 ENSMUST00000155267 - NO_TRANSLATION retained_intron ENSMUSG00000046861 Hectd3 ENSMUST00000050067 ENSMUSP00000051922 TRANSLATION protein_coding - CCDS18522.1 1 861.0 3.0 5.065 8.7 229.2 0.0 -4,0 1.0 26 18.0 PRINCIPAL:1 ENSMUSG00000039967 Zfp292 ENSMUST00000098163 ENSMUSP00000095766 TRANSLATION protein_coding - - 1 2693.0 41.0 0.0 0.0 32.7 0.0 -4,-5 0.9193 25 8.0 ALTERNATIVE:2 ENSMUSG00000039967 Zfp292 ENSMUST00000047950 ENSMUSP00000037233 TRANSLATION protein_coding - CCDS51138.1 1 2698.0 41.0 0.0 0.0 32.7 0.0 -4,-5 0.9907 25 8.0 PRINCIPAL:4 ENSMUSG00000078687 Mup8 ENSMUST00000095058 ENSMUSP00000092668 TRANSLATION protein_coding - CCDS84740.1 2 180.0 0.0 4.88 0.0 108.7 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000078687 Mup8 ENSMUST00000163931 ENSMUSP00000128910 TRANSLATION protein_coding - - 5 235.0 0.0 4.85 0.0 108.7 0.0 4,-1 0.1267 - 7.94 ALTERNATIVE:2 ENSMUSG00000028466 Creb3 ENSMUST00000126277 - NO_TRANSLATION retained_intron ENSMUSG00000028466 Creb3 ENSMUST00000132631 ENSMUSP00000123831 TRANSLATION protein_coding stop - 3 47.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028466 Creb3 ENSMUST00000102944 ENSMUSP00000100008 TRANSLATION protein_coding - CCDS18102.1 1 379.0 0.0 4.25 0.0 41.7 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000028466 Creb3 ENSMUST00000159923 - NO_TRANSLATION retained_intron ENSMUSG00000028466 Creb3 ENSMUST00000138623 - NO_TRANSLATION retained_intron ENSMUSG00000040616 Tmem51 ENSMUST00000036572 ENSMUSP00000042919 TRANSLATION protein_coding - CCDS18886.1 1 249.0 0.0 0.0 16.5 291.7 0.0 -2,-5 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000073889 Il11ra1 ENSMUST00000152748 - NO_TRANSLATION retained_intron ENSMUSG00000073889 Il11ra1 ENSMUST00000140894 - NO_TRANSLATION retained_intron ENSMUSG00000073889 Il11ra1 ENSMUST00000145445 - NO_TRANSLATION retained_intron ENSMUSG00000073889 Il11ra1 ENSMUST00000146608 - NO_TRANSLATION retained_intron ENSMUSG00000073889 Il11ra1 ENSMUST00000098132 ENSMUSP00000095736 TRANSLATION protein_coding - CCDS18071.1 1 432.0 0.0 6.515 0.0 0.0 1.0 1,-2 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000073889 Il11ra1 ENSMUST00000142059 - NO_TRANSLATION retained_intron ENSMUSG00000073889 Il11ra1 ENSMUST00000108040 ENSMUSP00000103675 TRANSLATION protein_coding - CCDS18071.1 5 432.0 0.0 6.515 0.0 0.0 1.0 1,-2 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000073889 Il11ra1 ENSMUST00000155538 - NO_TRANSLATION retained_intron ENSMUSG00000073889 Il11ra1 ENSMUST00000108041 ENSMUSP00000103676 TRANSLATION protein_coding - CCDS18071.1 1 432.0 0.0 6.515 0.0 0.0 1.0 1,-2 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000073889 Il11ra1 ENSMUST00000108042 ENSMUSP00000103677 TRANSLATION protein_coding - CCDS18071.1 1 432.0 0.0 6.515 0.0 0.0 1.0 1,-2 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000070683 Lactbl1 ENSMUST00000178843 ENSMUSP00000138455 TRANSLATION protein_coding - CCDS59661.1 5 581.0 0.0 0.702 2.2 136.0 0.0 -3,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000038544 Inip ENSMUST00000138097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038544 Inip ENSMUST00000128548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038544 Inip ENSMUST00000095063 ENSMUSP00000092673 TRANSLATION protein_coding - CCDS18225.1 1 104.0 0.0 1.8 31.7 77.8 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000038544 Inip ENSMUST00000143756 ENSMUSP00000115701 TRANSLATION protein_coding stop - 3 72.0 0.0 1.55 5.7 71.1 0.0 -4,-2 0.1418 1 -2.0 MINOR ENSMUSG00000038544 Inip ENSMUST00000107526 ENSMUSP00000103150 TRANSLATION protein_coding - - 1 74.0 0.0 1.8 5.7 71.1 0.0 -4,-2 0.2039 1 12.096 MINOR ENSMUSG00000028747 Htr6 ENSMUST00000105802 ENSMUSP00000101428 TRANSLATION protein_coding - CCDS18838.1 5 440.0 0.0 1.3 9.0 208.5 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028747 Htr6 ENSMUST00000068036 ENSMUSP00000068333 TRANSLATION protein_coding - CCDS18838.1 1 440.0 0.0 1.3 9.0 208.5 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059218 Pramel26 ENSMUST00000105769 ENSMUSP00000101395 TRANSLATION protein_coding - - 1 330.0 0.0 1.85 0.0 0.0 0.0 -4,-6 0.0286 - 4.188 MINOR ENSMUSG00000059218 Pramel26 ENSMUST00000137635 - NO_TRANSLATION retained_intron ENSMUSG00000059218 Pramel26 ENSMUST00000075045 ENSMUSP00000074557 TRANSLATION protein_coding - - 1 476.0 0.0 2.65 0.0 0.0 0.0 -4,-6 0.654 - 6.0 PRINCIPAL:1 ENSMUSG00000028843 Sh3bgrl3 ENSMUST00000030651 ENSMUSP00000030651 TRANSLATION protein_coding - CCDS38910.1 1 93.0 0.0 2.25 35.9 123.6 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028843 Sh3bgrl3 ENSMUST00000136408 - NO_TRANSLATION retained_intron ENSMUSG00000028843 Sh3bgrl3 ENSMUST00000105879 ENSMUSP00000101505 TRANSLATION protein_coding - - 3 37.0 0.0 1.25 0.0 23.9 0.0 -4,-6 0.0 1 3.354 MINOR ENSMUSG00000028560 Usp1 ENSMUST00000169053 ENSMUSP00000130307 TRANSLATION protein_coding stop - 5 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000028560 Usp1 ENSMUST00000125104 ENSMUSP00000135496 TRANSLATION protein_coding stop - 2 150.0 0.0 2.01 0.0 49.8 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028560 Usp1 ENSMUST00000030289 ENSMUSP00000030289 TRANSLATION protein_coding - CCDS18381.1 1 784.0 4.0 3.33 8.9 130.3 0.0 -4,-6 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000028560 Usp1 ENSMUST00000091358 ENSMUSP00000088917 TRANSLATION protein_coding - CCDS18381.1 1 784.0 4.0 3.33 8.9 130.3 0.0 -4,-6 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000025413 Ttc4 ENSMUST00000026480 ENSMUSP00000026480 TRANSLATION protein_coding - CCDS18424.1 1 386.0 0.0 5.005 10.5 0.0 0.0 -4,-5 1.0 9 9.0 PRINCIPAL:1 ENSMUSG00000025413 Ttc4 ENSMUST00000132572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025413 Ttc4 ENSMUST00000142342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025413 Ttc4 ENSMUST00000132650 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025413 Ttc4 ENSMUST00000106772 ENSMUSP00000102384 TRANSLATION protein_coding - - 5 286.0 0.0 4.255 2.1 0.0 0.0 -4,-5 0.122 9 4.848 MINOR ENSMUSG00000025413 Ttc4 ENSMUST00000139687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025413 Ttc4 ENSMUST00000127571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025413 Ttc4 ENSMUST00000127133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025413 Ttc4 ENSMUST00000135676 ENSMUSP00000116620 TRANSLATION protein_coding stop - 5 241.0 0.0 2.32 0.0 0.0 0.0 -4,-5 0.0058 6 -2.0 MINOR ENSMUSG00000043698 Or13p10 ENSMUST00000217013 ENSMUSP00000149687 TRANSLATION protein_coding - CCDS18556.1 5 315.0 0.0 1.0 11.0 179.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043698 Or13p10 ENSMUST00000213189 ENSMUSP00000149043 TRANSLATION protein_coding - CCDS18556.1 5 315.0 0.0 1.0 11.0 179.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043698 Or13p10 ENSMUST00000102666 ENSMUSP00000099727 TRANSLATION protein_coding - CCDS18556.1 - 315.0 0.0 1.0 11.0 179.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034853 Acot11 ENSMUST00000065253 ENSMUSP00000069636 TRANSLATION protein_coding - CCDS84764.1 1 614.0 0.0 11.825 0.0 188.3 0.0 -4,0 0.2075 14 12.0 MINOR ENSMUSG00000034853 Acot11 ENSMUST00000156567 ENSMUSP00000123942 TRANSLATION nonsense_mediated_decay - - 5 89.0 0.0 0.666 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000034853 Acot11 ENSMUST00000145061 ENSMUSP00000125123 TRANSLATION protein_coding stop - 5 107.0 0.0 1.68 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000034853 Acot11 ENSMUST00000148688 ENSMUSP00000124385 TRANSLATION protein_coding stop - 5 92.0 0.0 1.35 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000034853 Acot11 ENSMUST00000102762 ENSMUSP00000099823 TRANSLATION protein_coding - CCDS18426.1 1 594.0 0.0 11.825 5.8 188.3 0.0 -4,-1 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000034853 Acot11 ENSMUST00000140541 ENSMUSP00000124567 TRANSLATION nonsense_mediated_decay start - 5 76.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000034853 Acot11 ENSMUST00000144809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062518 Zfp534 ENSMUST00000117638 ENSMUSP00000113561 TRANSLATION protein_coding - CCDS57313.1 2 661.0 60.0 1.0 0.0 439.5 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028540 Dph2 ENSMUST00000183773 ENSMUSP00000138948 TRANSLATION nonsense_mediated_decay - - 1 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028540 Dph2 ENSMUST00000139332 - NO_TRANSLATION retained_intron ENSMUSG00000028540 Dph2 ENSMUST00000030265 ENSMUSP00000030265 TRANSLATION protein_coding - CCDS18541.1 1 489.0 0.0 2.35 9.9 216.0 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000028540 Dph2 ENSMUST00000126554 - NO_TRANSLATION retained_intron ENSMUSG00000071001 Hrct1 ENSMUST00000095109 ENSMUSP00000092727 TRANSLATION protein_coding - CCDS51169.1 - 109.0 0.0 0.0 0.0 56.1 0.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043621 Ubxn10 ENSMUST00000105810 ENSMUSP00000101436 TRANSLATION protein_coding - CCDS18830.1 1 277.0 0.0 0.6 4.9 38.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043621 Ubxn10 ENSMUST00000105811 ENSMUSP00000101437 TRANSLATION protein_coding - CCDS18830.1 1 277.0 0.0 0.6 4.9 38.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043621 Ubxn10 ENSMUST00000146415 ENSMUSP00000117219 TRANSLATION nonsense_mediated_decay - CCDS18830.1 1 277.0 0.0 0.6 4.9 38.8 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000043621 Ubxn10 ENSMUST00000135156 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043621 Ubxn10 ENSMUST00000105809 ENSMUSP00000101435 TRANSLATION protein_coding - CCDS18830.1 1 277.0 0.0 0.6 4.9 38.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028946 Hes3 ENSMUST00000218045 ENSMUSP00000151815 TRANSLATION protein_coding - - 5 200.0 0.0 1.8 2.0 47.0 0.0 -4,-6 0.7097 - 8.378 ALTERNATIVE:2 ENSMUSG00000028946 Hes3 ENSMUST00000094438 ENSMUSP00000092006 TRANSLATION protein_coding - CCDS18997.1 1 175.0 0.0 1.5 6.3 44.0 0.0 -4,-1 1.0 - 8.332 PRINCIPAL:2 ENSMUSG00000032890 Rims3 ENSMUST00000171363 ENSMUSP00000130295 TRANSLATION protein_coding - CCDS18595.1 1 307.0 0.0 3.8 24.9 56.1 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000032890 Rims3 ENSMUST00000071093 ENSMUSP00000068178 TRANSLATION protein_coding - CCDS18595.1 1 307.0 0.0 3.8 24.9 56.1 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000032890 Rims3 ENSMUST00000106283 ENSMUSP00000101890 TRANSLATION protein_coding - CCDS18595.1 5 307.0 0.0 3.8 24.9 56.1 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000032890 Rims3 ENSMUST00000132895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066196 Spag8 ENSMUST00000084646 ENSMUSP00000081696 TRANSLATION protein_coding - CCDS71376.1 1 470.0 0.0 3.13 0.0 0.0 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000066196 Spag8 ENSMUST00000149575 ENSMUSP00000131825 TRANSLATION protein_coding start - 5 132.0 0.0 2.8 0.0 0.0 0.0 -4,-5 0.008 2 -2.0 MINOR ENSMUSG00000066196 Spag8 ENSMUST00000107870 ENSMUSP00000103502 TRANSLATION protein_coding - CCDS38743.1 1 411.0 0.0 2.33 0.0 0.0 0.0 -4,-5 0.1369 5 4.398 MINOR ENSMUSG00000035551 Igfbpl1 ENSMUST00000044297 ENSMUSP00000036974 TRANSLATION protein_coding - CCDS38756.1 1 270.0 0.0 4.0 0.1 101.0 0.0 3,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000035551 Igfbpl1 ENSMUST00000145102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073774 Kncn ENSMUST00000097918 ENSMUSP00000095531 TRANSLATION protein_coding - CCDS18499.1 1 124.0 0.0 0.0 9.0 243.6 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000073774 Kncn ENSMUST00000128222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028542 Slc6a9 ENSMUST00000151316 ENSMUSP00000118372 TRANSLATION protein_coding stop - 5 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0302 - -2.0 MINOR ENSMUSG00000028542 Slc6a9 ENSMUST00000123994 ENSMUSP00000127806 TRANSLATION protein_coding stop - 5 116.0 0.0 2.375 0.0 152.2 4.0 1,-3 0.0033 - -2.0 MINOR ENSMUSG00000028542 Slc6a9 ENSMUST00000030269 ENSMUSP00000030269 TRANSLATION protein_coding - CCDS18538.1 1 633.0 0.0 12.57375 12.4 770.3 17.0 -4,-6 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000028542 Slc6a9 ENSMUST00000136476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028542 Slc6a9 ENSMUST00000169885 ENSMUSP00000127093 TRANSLATION protein_coding - - 5 521.0 0.0 10.12375 2.9 601.4 12.0 -3,-5 0.0765 6 1.599 MINOR ENSMUSG00000028542 Slc6a9 ENSMUST00000063857 ENSMUSP00000066102 TRANSLATION protein_coding - CCDS18538.1 1 633.0 0.0 12.57375 12.4 770.3 17.0 -4,-6 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000028542 Slc6a9 ENSMUST00000163288 ENSMUSP00000127289 TRANSLATION protein_coding - - 5 637.0 0.0 12.07375 1.0 698.2 17.0 -4,-7 0.1602 7 6.672 MINOR ENSMUSG00000028542 Slc6a9 ENSMUST00000169990 ENSMUSP00000127203 TRANSLATION protein_coding stop - 5 373.0 0.0 6.97375 0.0 434.8 7.0 -4,-7 0.0021 2 -2.0 MINOR ENSMUSG00000028542 Slc6a9 ENSMUST00000170733 - NO_TRANSLATION retained_intron ENSMUSG00000028542 Slc6a9 ENSMUST00000132043 ENSMUSP00000122676 TRANSLATION protein_coding stop - 5 321.0 0.0 6.97375 0.0 434.8 7.0 -4,-5 0.0029 2 -2.0 MINOR ENSMUSG00000028542 Slc6a9 ENSMUST00000149168 ENSMUSP00000129359 TRANSLATION nonsense_mediated_decay - - 1 126.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028542 Slc6a9 ENSMUST00000135769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028964 Park7 ENSMUST00000146184 ENSMUSP00000120832 TRANSLATION protein_coding stop - 5 84.0 0.0 2.75 0.0 82.8 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000028964 Park7 ENSMUST00000148626 - NO_TRANSLATION retained_intron ENSMUSG00000028964 Park7 ENSMUST00000132265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028964 Park7 ENSMUST00000128075 ENSMUSP00000115875 TRANSLATION protein_coding stop - 5 135.0 0.0 4.25 0.0 142.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000028964 Park7 ENSMUST00000030805 ENSMUSP00000030805 TRANSLATION protein_coding - CCDS18975.1 1 189.0 0.0 5.75 36.9 179.2 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000028964 Park7 ENSMUST00000105676 ENSMUSP00000101301 TRANSLATION protein_coding - - 5 175.0 0.0 5.25 0.0 177.9 0.0 -4,-5 0.001 12 10.92 MINOR ENSMUSG00000028964 Park7 ENSMUST00000105673 ENSMUSP00000101298 TRANSLATION protein_coding - CCDS18975.1 5 189.0 0.0 5.75 36.9 179.2 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000028964 Park7 ENSMUST00000105675 ENSMUSP00000101300 TRANSLATION protein_coding - CCDS18975.1 5 189.0 0.0 5.75 36.9 179.2 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000028964 Park7 ENSMUST00000105674 ENSMUSP00000101299 TRANSLATION protein_coding - CCDS18975.1 5 189.0 0.0 5.75 36.9 179.2 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000028964 Park7 ENSMUST00000134751 ENSMUSP00000122265 TRANSLATION protein_coding stop - 2 125.0 0.0 3.15 0.0 84.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000070934 Rraga ENSMUST00000091064 ENSMUSP00000088591 TRANSLATION protein_coding - CCDS18306.1 - 313.0 21.0 1.0 35.4 362.8 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000028860 Sytl1 ENSMUST00000154911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028860 Sytl1 ENSMUST00000142039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028860 Sytl1 ENSMUST00000105908 ENSMUSP00000101528 TRANSLATION protein_coding - - 5 503.0 0.0 3.52375 0.0 84.7 0.0 -4,-7 0.0005 10 9.138 MINOR ENSMUSG00000028860 Sytl1 ENSMUST00000030674 ENSMUSP00000030674 TRANSLATION protein_coding - CCDS38902.1 1 568.0 0.0 4.12375 1.5 112.4 0.0 -4,-7 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000073802 Cdkn2b ENSMUST00000097981 ENSMUSP00000095595 TRANSLATION protein_coding - CCDS18351.1 1 130.0 0.0 2.0 2.6 29.4 0.0 -4,-6 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000048626 Klf17 ENSMUST00000062747 ENSMUSP00000052316 TRANSLATION protein_coding - CCDS18537.1 1 341.0 12.0 1.0 0.1 47.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000052137 Rbm12b2 ENSMUST00000063839 ENSMUSP00000066311 TRANSLATION protein_coding - CCDS17975.1 1 834.0 0.0 0.0 0.1 83.7 0.0 -4,-7 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000052137 Rbm12b2 ENSMUST00000095143 ENSMUSP00000092765 TRANSLATION protein_coding - CCDS17975.1 1 834.0 0.0 0.0 0.1 83.7 0.0 -4,-7 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000078504 Aadacl4fm5 ENSMUST00000105746 ENSMUSP00000101372 TRANSLATION protein_coding - CCDS51367.1 3 393.0 3.0 3.55 0.1 0.0 0.0 2,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000006586 Runx1t1 ENSMUST00000105566 ENSMUSP00000127109 TRANSLATION protein_coding - CCDS51125.1 5 604.0 8.0 6.6 14.6 280.6 0.0 -4,-7 0.8969 1 16.64 MINOR ENSMUSG00000006586 Runx1t1 ENSMUST00000150583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006586 Runx1t1 ENSMUST00000139736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006586 Runx1t1 ENSMUST00000098256 ENSMUSP00000095856 TRANSLATION protein_coding - CCDS17978.1 1 577.0 8.0 6.6 21.6 280.6 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:4 ENSMUSG00000006586 Runx1t1 ENSMUST00000006761 ENSMUSP00000006761 TRANSLATION protein_coding - CCDS51124.1 1 584.0 8.0 6.6 20.9 280.6 0.0 -4,-6 0.9882 1 17.864 ALTERNATIVE:1 ENSMUSG00000006586 Runx1t1 ENSMUST00000098257 ENSMUSP00000095857 TRANSLATION protein_coding - CCDS51125.1 1 604.0 8.0 6.6 14.6 280.6 0.0 -4,-7 0.8969 1 16.64 MINOR ENSMUSG00000043572 Pars2 ENSMUST00000106781 ENSMUSP00000102393 TRANSLATION protein_coding - CCDS38828.1 1 511.0 23.0 0.6 0.0 151.3 0.0 -4,-2 0.2061 11 18.0 MINOR ENSMUSG00000043572 Pars2 ENSMUST00000058905 ENSMUSP00000053160 TRANSLATION protein_coding - CCDS18423.1 1 475.0 23.0 0.6 10.9 151.3 0.0 -4,-1 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000043572 Pars2 ENSMUST00000146966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043572 Pars2 ENSMUST00000106782 ENSMUSP00000102394 TRANSLATION protein_coding stop - 2 163.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028786 Tmem54 ENSMUST00000148979 ENSMUSP00000123006 TRANSLATION protein_coding stop - 3 106.0 0.0 0.0 0.0 93.6 5.0 -4,-7 0.0067 - -2.0 MINOR ENSMUSG00000028786 Tmem54 ENSMUST00000106064 ENSMUSP00000101679 TRANSLATION protein_coding - CCDS18681.1 1 219.0 0.0 0.0 0.1 210.9 8.0 -4,-7 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000028786 Tmem54 ENSMUST00000030575 ENSMUSP00000030575 TRANSLATION protein_coding - CCDS57298.1 1 185.0 0.0 0.0 0.0 109.3 6.0 -4,-7 0.0575 - 0.0 MINOR ENSMUSG00000028786 Tmem54 ENSMUST00000030577 ENSMUSP00000030577 TRANSLATION protein_coding - CCDS71472.1 3 205.0 0.0 0.0 0.0 210.9 8.0 -4,-7 0.2973 - 2.0 ALTERNATIVE:2 ENSMUSG00000028911 Srsf4 ENSMUST00000129966 ENSMUSP00000141468 TRANSLATION nonsense_mediated_decay start - 5 56.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028911 Srsf4 ENSMUST00000053819 ENSMUSP00000061474 TRANSLATION protein_coding - CCDS51315.1 1 491.0 0.0 3.8 0.0 105.7 0.0 -4,-7 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000028911 Srsf4 ENSMUST00000134943 ENSMUSP00000142148 TRANSLATION nonsense_mediated_decay start - 5 31.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000028911 Srsf4 ENSMUST00000030743 - NO_TRANSLATION retained_intron ENSMUSG00000028403 Zdhhc21 ENSMUST00000030110 ENSMUSP00000030110 TRANSLATION protein_coding - CCDS18294.1 1 265.0 8.0 7.3 36.9 113.3 8.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000028403 Zdhhc21 ENSMUST00000156055 ENSMUSP00000120914 TRANSLATION protein_coding stop - 2 26.0 0.0 0.0 0.0 0.0 1.0 -3,-7 0.0 - -2.0 MINOR ENSMUSG00000028403 Zdhhc21 ENSMUST00000107239 ENSMUSP00000102859 TRANSLATION protein_coding - CCDS18294.1 1 265.0 8.0 7.3 36.9 113.3 8.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000028403 Zdhhc21 ENSMUST00000144139 - NO_TRANSLATION retained_intron ENSMUSG00000028403 Zdhhc21 ENSMUST00000139401 ENSMUSP00000121954 TRANSLATION protein_coding stop - 5 109.0 5.0 3.25 0.0 0.0 6.0 -4,-5 0.0038 - -2.0 MINOR ENSMUSG00000028403 Zdhhc21 ENSMUST00000173741 ENSMUSP00000133630 TRANSLATION nonsense_mediated_decay - - 1 133.0 8.0 3.75 0.0 51.3 6.0 -4,-5 0.0028 - -2.0 MINOR ENSMUSG00000028453 Fancg ENSMUST00000123332 - NO_TRANSLATION retained_intron ENSMUSG00000028453 Fancg ENSMUST00000134083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028453 Fancg ENSMUST00000124645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028453 Fancg ENSMUST00000133915 - NO_TRANSLATION retained_intron ENSMUSG00000028453 Fancg ENSMUST00000135362 - NO_TRANSLATION retained_intron ENSMUSG00000028453 Fancg ENSMUST00000030165 ENSMUSP00000030165 TRANSLATION protein_coding - CCDS18087.1 1 623.0 0.0 0.0 3.0 0.0 0.0 -4,-6 0.9717 1 1.0 PRINCIPAL:1 ENSMUSG00000028453 Fancg ENSMUST00000148018 - NO_TRANSLATION retained_intron ENSMUSG00000028453 Fancg ENSMUST00000125570 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028453 Fancg ENSMUST00000132273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028453 Fancg ENSMUST00000127067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028842 Ago3 ENSMUST00000069097 ENSMUSP00000066633 TRANSLATION protein_coding - CCDS18652.1 1 860.0 5.0 17.3 30.5 799.6 0.0 -4,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000028842 Ago3 ENSMUST00000127831 ENSMUSP00000118577 TRANSLATION protein_coding start/stop - 5 144.0 0.0 2.5 0.0 127.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000028842 Ago3 ENSMUST00000155645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028842 Ago3 ENSMUST00000123233 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028842 Ago3 ENSMUST00000132123 ENSMUSP00000116204 TRANSLATION protein_coding start - 3 161.0 0.0 3.75 0.0 193.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028842 Ago3 ENSMUST00000151179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049799 Lrrc19 ENSMUST00000107101 ENSMUSP00000102718 TRANSLATION protein_coding - CCDS18360.1 1 364.0 0.0 0.7 5.1 184.5 1.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000049799 Lrrc19 ENSMUST00000053419 ENSMUSP00000056094 TRANSLATION protein_coding - CCDS18360.1 1 364.0 0.0 0.7 5.1 184.5 1.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000078515 Ddi2 ENSMUST00000177592 ENSMUSP00000136018 TRANSLATION protein_coding - CCDS18879.1 1 582.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0292 5 0.0 MINOR ENSMUSG00000078515 Ddi2 ENSMUST00000102484 ENSMUSP00000099542 TRANSLATION protein_coding - CCDS18880.1 1 399.0 0.0 7.8 10.4 235.0 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000062627 Mysm1 ENSMUST00000125427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062627 Mysm1 ENSMUST00000131575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062627 Mysm1 ENSMUST00000149954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062627 Mysm1 ENSMUST00000075872 ENSMUSP00000075269 TRANSLATION protein_coding - CCDS18363.1 1 819.0 3.0 4.765 1.0 156.4 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000062627 Mysm1 ENSMUST00000134730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062627 Mysm1 ENSMUST00000124820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062627 Mysm1 ENSMUST00000132758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062627 Mysm1 ENSMUST00000136130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062627 Mysm1 ENSMUST00000155935 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078680 Mup10 ENSMUST00000098047 ENSMUSP00000095655 TRANSLATION protein_coding - CCDS51189.1 2 180.0 0.0 4.88 0.0 109.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078680 Mup10 ENSMUST00000148302 - NO_TRANSLATION retained_intron ENSMUSG00000066071 Cyp4a12a ENSMUST00000084343 ENSMUSP00000081370 TRANSLATION protein_coding - CCDS18489.1 1 508.0 30.0 11.0 11.2 435.7 0.0 -2,-4 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000053730 Tmem39b ENSMUST00000125445 ENSMUSP00000121505 TRANSLATION nonsense_mediated_decay - - 1 131.0 0.0 0.0 0.0 121.8 1.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000053730 Tmem39b ENSMUST00000102588 ENSMUSP00000099648 TRANSLATION protein_coding - CCDS18702.1 1 492.0 0.0 0.0 17.0 679.7 3.0 -4,-2 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000053730 Tmem39b ENSMUST00000147668 ENSMUSP00000120048 TRANSLATION nonsense_mediated_decay - - 3 128.0 0.0 0.0 0.0 120.6 1.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000053730 Tmem39b ENSMUST00000137640 ENSMUSP00000115156 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 77.6 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000053730 Tmem39b ENSMUST00000154747 - NO_TRANSLATION retained_intron ENSMUSG00000078672 Mup20 ENSMUST00000074018 ENSMUSP00000073667 TRANSLATION protein_coding - CCDS18233.1 1 181.0 0.0 4.88 0.0 117.4 0.0 4,-1 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000045917 Tmem268 ENSMUST00000150360 ENSMUSP00000114729 TRANSLATION protein_coding stop - 2 159.0 0.0 0.448 0.0 174.2 5.0 -4,-5 0.0037 1 -2.0 MINOR ENSMUSG00000045917 Tmem268 ENSMUST00000126738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045917 Tmem268 ENSMUST00000124332 ENSMUSP00000120335 TRANSLATION protein_coding stop - 3 148.0 0.0 0.0 0.0 159.3 3.0 -4,-5 0.0015 1 -2.0 MINOR ENSMUSG00000045917 Tmem268 ENSMUST00000077709 ENSMUSP00000076891 TRANSLATION protein_coding - CCDS18261.1 1 342.0 0.0 1.248 9.9 422.3 5.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000045917 Tmem268 ENSMUST00000080336 ENSMUSP00000079211 TRANSLATION protein_coding - CCDS18261.1 1 342.0 0.0 1.248 9.9 422.3 5.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000038630 Zkscan16 ENSMUST00000107554 ENSMUSP00000103178 TRANSLATION protein_coding - CCDS38771.1 5 728.0 36.0 1.0 0.0 333.3 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000047675 Rps8 ENSMUST00000144051 - NO_TRANSLATION retained_intron ENSMUSG00000047675 Rps8 ENSMUST00000140226 - NO_TRANSLATION retained_intron ENSMUSG00000047675 Rps8 ENSMUST00000102696 ENSMUSP00000099757 TRANSLATION protein_coding - CCDS18530.1 1 208.0 0.0 5.0 34.9 212.1 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000047675 Rps8 ENSMUST00000137423 - NO_TRANSLATION retained_intron ENSMUSG00000047675 Rps8 ENSMUST00000141219 - NO_TRANSLATION retained_intron ENSMUSG00000047675 Rps8 ENSMUST00000127037 - NO_TRANSLATION retained_intron ENSMUSG00000028865 Cd164l2 ENSMUST00000150744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028865 Cd164l2 ENSMUST00000105910 ENSMUSP00000101530 TRANSLATION protein_coding - CCDS38901.1 1 172.0 0.0 0.8 8.9 78.5 0.0 2,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028865 Cd164l2 ENSMUST00000218998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028865 Cd164l2 ENSMUST00000134713 - NO_TRANSLATION retained_intron ENSMUSG00000028865 Cd164l2 ENSMUST00000218338 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028865 Cd164l2 ENSMUST00000126929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038729 Pakap ENSMUST00000098065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038729 Pakap ENSMUST00000124581 ENSMUSP00000119742 TRANSLATION protein_coding stop - 2 176.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000038729 Pakap ENSMUST00000098064 ENSMUSP00000095672 TRANSLATION protein_coding - CCDS18203.1 1 880.0 0.0 0.0 0.0 34.1 0.0 -4,-5 0.2529 27 3.93 MINOR ENSMUSG00000038729 Pakap ENSMUST00000102903 ENSMUSP00000099967 TRANSLATION protein_coding - CCDS18205.1 1 795.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1167 25 0.0 MINOR ENSMUSG00000038729 Pakap ENSMUST00000132497 ENSMUSP00000120325 TRANSLATION protein_coding stop - 2 186.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000038729 Pakap ENSMUST00000102902 ENSMUSP00000099966 TRANSLATION protein_coding - CCDS18205.1 1 795.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1167 25 0.0 MINOR ENSMUSG00000038729 Pakap ENSMUST00000107600 ENSMUSP00000103226 TRANSLATION protein_coding - - 2 921.0 0.0 0.0 0.0 34.9 0.0 -4,-5 0.0692 29 4.02 MINOR ENSMUSG00000038729 Pakap ENSMUST00000238994 ENSMUSP00000159196 TRANSLATION protein_coding stop - - 336.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0024 13 -2.0 MINOR ENSMUSG00000038729 Pakap ENSMUST00000043456 ENSMUSP00000048678 TRANSLATION protein_coding - CCDS18204.1 1 893.0 0.0 0.0 0.0 52.1 0.0 -4,-5 0.9421 28 6.0 PRINCIPAL:1 ENSMUSG00000038729 Pakap ENSMUST00000107598 ENSMUSP00000103224 TRANSLATION protein_coding - CCDS18203.1 1 880.0 0.0 0.0 0.0 34.1 0.0 -4,-5 0.2529 27 3.93 MINOR ENSMUSG00000028343 Erp44 ENSMUST00000030028 ENSMUSP00000030028 TRANSLATION protein_coding - CCDS18165.1 1 406.0 0.0 9.75 15.7 221.4 0.0 1,-2 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000028343 Erp44 ENSMUST00000132927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028343 Erp44 ENSMUST00000148947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028343 Erp44 ENSMUST00000138743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028618 Tmem59 ENSMUST00000030361 ENSMUSP00000030361 TRANSLATION protein_coding - CCDS18432.1 1 323.0 0.0 0.0 11.0 233.5 1.0 1,-2 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000028618 Tmem59 ENSMUST00000154007 ENSMUSP00000119701 TRANSLATION nonsense_mediated_decay - - 5 90.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.002 - -2.0 MINOR ENSMUSG00000028618 Tmem59 ENSMUST00000141013 - NO_TRANSLATION retained_intron ENSMUSG00000028618 Tmem59 ENSMUST00000127652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028618 Tmem59 ENSMUST00000128123 ENSMUSP00000120288 TRANSLATION protein_coding stop - 5 127.0 0.0 0.0 0.0 183.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028618 Tmem59 ENSMUST00000106753 ENSMUSP00000102364 TRANSLATION protein_coding - - 5 256.0 0.0 0.0 1.0 134.7 1.0 1,-2 0.0144 3 0.072 MINOR ENSMUSG00000050188 Lsm10 ENSMUST00000179323 ENSMUSP00000136585 TRANSLATION protein_coding - CCDS18642.1 2 122.0 0.0 1.75 27.9 49.7 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000050188 Lsm10 ENSMUST00000055575 ENSMUSP00000061913 TRANSLATION protein_coding - CCDS18642.1 1 122.0 0.0 1.75 27.9 49.7 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000050188 Lsm10 ENSMUST00000151831 ENSMUSP00000119610 TRANSLATION protein_coding stop - 2 93.0 0.0 1.0 0.0 49.7 0.0 -4,-6 0.0114 2 -2.0 MINOR ENSMUSG00000082932 Cyp2j8 ENSMUST00000124729 ENSMUSP00000134591 TRANSLATION protein_coding - CCDS57288.1 5 503.0 31.0 9.0 5.5 444.4 0.0 -2,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000028996 Rbp7 ENSMUST00000030848 ENSMUSP00000030848 TRANSLATION protein_coding - CCDS18959.1 1 134.0 19.0 4.0 35.7 62.4 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000028996 Rbp7 ENSMUST00000132103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028996 Rbp7 ENSMUST00000148596 ENSMUSP00000119166 TRANSLATION nonsense_mediated_decay start - 3 68.0 4.0 1.816 0.0 21.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029066 Mrpl20 ENSMUST00000185148 ENSMUSP00000139169 TRANSLATION protein_coding - - 3 112.0 0.0 2.5 0.0 66.7 0.0 -4,0 0.0003 5 6.432 MINOR ENSMUSG00000029066 Mrpl20 ENSMUST00000137487 ENSMUSP00000139122 TRANSLATION nonsense_mediated_decay - CCDS19041.1 1 149.0 0.0 3.5 30.5 126.2 0.0 -4,0 1.0 - -2.0 MINOR ENSMUSG00000029066 Mrpl20 ENSMUST00000130188 ENSMUSP00000139007 TRANSLATION protein_coding - - 3 96.0 0.0 2.5 0.0 85.8 0.0 -4,0 0.0 2 7.578 MINOR ENSMUSG00000029066 Mrpl20 ENSMUST00000143503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029066 Mrpl20 ENSMUST00000184339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029066 Mrpl20 ENSMUST00000030942 ENSMUSP00000030942 TRANSLATION protein_coding - CCDS19041.1 1 149.0 0.0 3.5 30.5 126.2 0.0 -4,0 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000054958 Nt5c1a ENSMUST00000068262 ENSMUSP00000069422 TRANSLATION protein_coding - CCDS38871.1 1 365.0 0.0 5.0 9.5 352.8 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000049649 Gpr3 ENSMUST00000052090 ENSMUSP00000062083 TRANSLATION protein_coding - CCDS18743.1 1 330.0 0.0 2.0 11.1 115.4 7.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000049649 Gpr3 ENSMUST00000151025 ENSMUSP00000116032 TRANSLATION protein_coding stop - 3 96.0 0.0 1.0 0.0 0.0 2.0 -4,-7 0.0017 - -2.0 MINOR ENSMUSG00000049649 Gpr3 ENSMUST00000105911 ENSMUSP00000101531 TRANSLATION protein_coding - CCDS18743.1 - 330.0 0.0 2.0 11.1 115.4 7.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000056596 Trnp1 ENSMUST00000125541 ENSMUSP00000129613 TRANSLATION protein_coding - CCDS38904.1 1 223.0 0.0 0.6 2.5 0.0 0.0 -4,-5 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000056596 Trnp1 ENSMUST00000123169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029049 Morn1 ENSMUST00000127457 ENSMUSP00000116690 TRANSLATION protein_coding stop - 3 214.0 0.0 3.92 0.0 158.8 0.0 -4,-7 0.0495 1 -2.0 MINOR ENSMUSG00000029049 Morn1 ENSMUST00000132367 ENSMUSP00000116794 TRANSLATION nonsense_mediated_decay - - 1 254.0 0.0 4.402 0.0 170.1 0.0 -4,-7 0.0381 1 -2.0 MINOR ENSMUSG00000029049 Morn1 ENSMUST00000155775 ENSMUSP00000123207 TRANSLATION protein_coding stop - 5 124.0 0.0 2.37 0.0 91.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029049 Morn1 ENSMUST00000129180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029049 Morn1 ENSMUST00000030915 ENSMUSP00000030915 TRANSLATION protein_coding - CCDS38991.1 1 477.0 0.0 4.402 0.0 166.4 0.0 -4,-7 1.0 2 11.778 PRINCIPAL:1 ENSMUSG00000029049 Morn1 ENSMUST00000155375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029049 Morn1 ENSMUST00000129415 - NO_TRANSLATION retained_intron ENSMUSG00000029049 Morn1 ENSMUST00000151710 - NO_TRANSLATION retained_intron ENSMUSG00000028825 Rhd ENSMUST00000136163 - NO_TRANSLATION retained_intron ENSMUSG00000028825 Rhd ENSMUST00000030627 ENSMUSP00000030627 TRANSLATION protein_coding - CCDS18778.1 1 418.0 0.0 4.745 1.0 163.0 0.0 -3,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000029063 Nadk ENSMUST00000143840 ENSMUSP00000115732 TRANSLATION protein_coding stop - 2 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0157 - -2.0 MINOR ENSMUSG00000029063 Nadk ENSMUST00000147062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029063 Nadk ENSMUST00000105613 ENSMUSP00000101238 TRANSLATION protein_coding - CCDS19031.1 1 439.0 17.0 8.32 6.4 0.0 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000029063 Nadk ENSMUST00000146080 ENSMUSP00000117504 TRANSLATION protein_coding stop - 3 85.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0061 1 -2.0 MINOR ENSMUSG00000029063 Nadk ENSMUST00000152297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029063 Nadk ENSMUST00000105612 ENSMUSP00000101237 TRANSLATION protein_coding - - 5 363.0 17.0 7.82 3.0 0.0 0.0 -4,-5 0.3591 5 11.738 MINOR ENSMUSG00000029063 Nadk ENSMUST00000030939 ENSMUSP00000030939 TRANSLATION protein_coding - CCDS19031.1 1 439.0 17.0 8.32 6.4 0.0 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000029063 Nadk ENSMUST00000135429 ENSMUSP00000114288 TRANSLATION protein_coding stop - 5 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0113 1 -2.0 MINOR ENSMUSG00000029068 Ccnl2 ENSMUST00000129850 - NO_TRANSLATION retained_intron ENSMUSG00000029068 Ccnl2 ENSMUST00000126346 ENSMUSP00000116000 TRANSLATION nonsense_mediated_decay start - 5 93.0 0.0 2.5 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029068 Ccnl2 ENSMUST00000139066 - NO_TRANSLATION retained_intron ENSMUSG00000029068 Ccnl2 ENSMUST00000136370 - NO_TRANSLATION retained_intron ENSMUSG00000029068 Ccnl2 ENSMUST00000030944 ENSMUSP00000030944 TRANSLATION protein_coding - CCDS19042.1 1 518.0 0.0 7.35 0.0 62.8 0.0 -2,0 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000006215 Zbtb17 ENSMUST00000130482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006215 Zbtb17 ENSMUST00000142438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006215 Zbtb17 ENSMUST00000144899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006215 Zbtb17 ENSMUST00000142695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006215 Zbtb17 ENSMUST00000006377 ENSMUSP00000006377 TRANSLATION protein_coding - CCDS18875.1 1 794.0 52.0 7.2 4.8 322.7 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000006215 Zbtb17 ENSMUST00000123477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006215 Zbtb17 ENSMUST00000142020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039410 Prdm16 ENSMUST00000105638 ENSMUSP00000101263 TRANSLATION protein_coding - - 5 1276.0 38.0 7.65 7.7 219.0 0.0 -4,-6 0.976 6 20.0 PRINCIPAL:1 ENSMUSG00000039410 Prdm16 ENSMUST00000030902 ENSMUSP00000030902 TRANSLATION protein_coding - CCDS38989.1 1 1275.0 38.0 7.55 4.6 219.0 0.0 -4,-6 1.0 6 18.876 MINOR ENSMUSG00000039410 Prdm16 ENSMUST00000097759 ENSMUSP00000095365 TRANSLATION protein_coding - - 5 1257.0 38.0 7.65 1.0 219.0 0.0 -4,-6 0.4235 6 18.0 MINOR ENSMUSG00000039410 Prdm16 ENSMUST00000105637 ENSMUSP00000101262 TRANSLATION protein_coding - CCDS71530.1 1 1274.0 38.0 7.55 4.6 219.0 0.0 -4,-6 0.9975 6 18.876 MINOR ENSMUSG00000039410 Prdm16 ENSMUST00000156069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039410 Prdm16 ENSMUST00000105636 ENSMUSP00000101261 TRANSLATION protein_coding - CCDS51400.1 1 1177.0 38.0 7.65 2.5 219.0 0.0 -4,-6 0.544 5 18.448 MINOR ENSMUSG00000039410 Prdm16 ENSMUST00000070313 ENSMUSP00000064546 TRANSLATION protein_coding - CCDS71532.1 1 1178.0 38.0 7.65 2.5 219.0 0.0 -4,-6 0.544 5 18.448 MINOR ENSMUSG00000039410 Prdm16 ENSMUST00000131762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039410 Prdm16 ENSMUST00000141164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039410 Prdm16 ENSMUST00000145217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039410 Prdm16 ENSMUST00000149605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039410 Prdm16 ENSMUST00000135064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039410 Prdm16 ENSMUST00000124771 ENSMUSP00000117598 TRANSLATION protein_coding stop - 5 214.0 0.0 3.15 0.0 22.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000066037 Hnrnpr ENSMUST00000182327 - NO_TRANSLATION retained_intron ENSMUSG00000066037 Hnrnpr ENSMUST00000156259 ENSMUSP00000117096 TRANSLATION protein_coding stop - 3 73.0 0.0 1.35 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000066037 Hnrnpr ENSMUST00000148843 ENSMUSP00000138399 TRANSLATION protein_coding - CCDS18805.1 1 632.0 0.0 9.06 23.8 145.4 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000066037 Hnrnpr ENSMUST00000180855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066037 Hnrnpr ENSMUST00000153505 - NO_TRANSLATION retained_intron ENSMUSG00000066037 Hnrnpr ENSMUST00000134524 ENSMUSP00000119666 TRANSLATION protein_coding stop - 5 270.0 0.0 6.06 0.0 51.8 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000066037 Hnrnpr ENSMUST00000084219 ENSMUSP00000081239 TRANSLATION protein_coding - CCDS71495.1 1 531.0 0.0 6.88 13.6 145.4 0.0 -4,-5 0.7747 15 9.85 MINOR ENSMUSG00000066037 Hnrnpr ENSMUST00000131671 ENSMUSP00000138263 TRANSLATION protein_coding - CCDS71495.1 1 531.0 0.0 6.88 13.6 145.4 0.0 -4,-5 0.7747 15 9.85 MINOR ENSMUSG00000066037 Hnrnpr ENSMUST00000145282 ENSMUSP00000138859 TRANSLATION nonsense_mediated_decay - - 3 103.0 0.0 1.85 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000066037 Hnrnpr ENSMUST00000105850 ENSMUSP00000101476 TRANSLATION protein_coding - CCDS18805.1 1 632.0 0.0 9.06 23.8 145.4 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000066037 Hnrnpr ENSMUST00000125696 ENSMUSP00000138190 TRANSLATION protein_coding stop - 3 72.0 0.0 1.88 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000086587 Gm11837 ENSMUST00000136992 ENSMUSP00000159571 TRANSLATION protein_coding - - 2 117.0 0.0 1.33 10.1 0.0 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000086587 Gm11837 ENSMUST00000137532 ENSMUSP00000159570 TRANSLATION protein_coding - - 3 117.0 0.0 1.33 10.1 0.0 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000086587 Gm11837 ENSMUST00000152024 ENSMUSP00000159573 TRANSLATION protein_coding - - 3 117.0 0.0 1.33 10.1 0.0 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000086587 Gm11837 ENSMUST00000246835 ENSMUSP00000159572 TRANSLATION protein_coding - - - 80.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0186 - 0.0 MINOR ENSMUSG00000028539 Artn ENSMUST00000150612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028539 Artn ENSMUST00000097913 ENSMUSP00000095526 TRANSLATION protein_coding - CCDS18543.1 1 224.0 0.0 1.0 4.0 47.1 0.0 -1,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028539 Artn ENSMUST00000070816 ENSMUSP00000064521 TRANSLATION protein_coding - CCDS18543.1 1 224.0 0.0 1.0 4.0 47.1 0.0 -1,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028539 Artn ENSMUST00000133703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025743 Sdc3 ENSMUST00000152591 ENSMUSP00000118685 TRANSLATION protein_coding stop - 3 148.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000025743 Sdc3 ENSMUST00000070478 ENSMUSP00000065877 TRANSLATION protein_coding - CCDS38894.1 1 442.0 0.0 0.8 0.4 93.0 0.0 -1,1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000025743 Sdc3 ENSMUST00000141297 ENSMUSP00000123608 TRANSLATION protein_coding stop - 3 148.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000025743 Sdc3 ENSMUST00000146093 - NO_TRANSLATION retained_intron ENSMUSG00000025743 Sdc3 ENSMUST00000140623 - NO_TRANSLATION retained_intron ENSMUSG00000078612 Fyb2 ENSMUST00000106803 ENSMUSP00000102415 TRANSLATION protein_coding - CCDS51250.1 1 793.0 0.0 1.93 0.0 51.6 0.0 -4,-5 0.4556 6 6.0 ALTERNATIVE:2 ENSMUSG00000078612 Fyb2 ENSMUST00000106804 ENSMUSP00000102416 TRANSLATION protein_coding - - 1 729.0 0.0 1.93 0.0 51.6 0.0 -4,-5 0.792 6 6.0 PRINCIPAL:2 ENSMUSG00000056174 Col8a2 ENSMUST00000128435 ENSMUSP00000123003 TRANSLATION protein_coding stop - 2 56.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.002 - -2.0 MINOR ENSMUSG00000056174 Col8a2 ENSMUST00000070132 ENSMUSP00000070270 TRANSLATION protein_coding - CCDS18649.1 1 699.0 3.0 0.4 3.2 161.0 0.0 2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000049214 Skint7 ENSMUST00000142162 - NO_TRANSLATION retained_intron ENSMUSG00000049214 Skint7 ENSMUST00000163281 ENSMUSP00000127347 TRANSLATION protein_coding - CCDS51266.1 1 395.0 0.0 2.5 0.0 39.5 4.0 -2,-5 0.4144 - 8.0 ALTERNATIVE:2 ENSMUSG00000049214 Skint7 ENSMUST00000106568 ENSMUSP00000102178 TRANSLATION protein_coding - - 1 314.0 0.0 2.5 0.0 39.5 3.0 -2,-5 0.7687 - 8.0 PRINCIPAL:2 ENSMUSG00000049214 Skint7 ENSMUST00000055014 ENSMUSP00000054822 TRANSLATION protein_coding - CCDS18475.1 1 252.0 0.0 2.4 0.0 39.5 0.0 -2,-5 0.2203 - 7.76 ALTERNATIVE:2 ENSMUSG00000028647 Mycbp ENSMUST00000137685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028647 Mycbp ENSMUST00000147340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028647 Mycbp ENSMUST00000106202 ENSMUSP00000101808 TRANSLATION protein_coding - - 1 146.0 0.0 2.25 0.0 0.0 0.0 -4,-6 0.0022 4 4.908 MINOR ENSMUSG00000028647 Mycbp ENSMUST00000030400 ENSMUSP00000030400 TRANSLATION protein_coding - CCDS18621.1 1 103.0 0.0 2.75 27.0 0.0 0.0 -4,-6 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000066007 Zfp600 ENSMUST00000131932 ENSMUSP00000117892 TRANSLATION protein_coding stop - 3 135.0 0.0 1.066 0.0 71.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000066007 Zfp600 ENSMUST00000092750 ENSMUSP00000090425 TRANSLATION protein_coding - CCDS51373.1 1 737.0 68.0 2.0 0.0 462.1 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000066007 Zfp600 ENSMUST00000151278 - NO_TRANSLATION retained_intron ENSMUSG00000066007 Zfp600 ENSMUST00000168483 ENSMUSP00000126879 TRANSLATION protein_coding - CCDS51373.1 2 737.0 68.0 2.0 0.0 462.1 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000040972 Igsf21 ENSMUST00000039331 ENSMUSP00000046558 TRANSLATION protein_coding - CCDS18851.1 1 468.0 0.0 2.855 7.8 29.7 0.0 4,-1 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000039936 Pik3cd ENSMUST00000124510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039936 Pik3cd ENSMUST00000156309 ENSMUSP00000115716 TRANSLATION protein_coding stop - 3 44.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039936 Pik3cd ENSMUST00000137430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039936 Pik3cd ENSMUST00000127273 ENSMUSP00000119858 TRANSLATION protein_coding stop - 3 171.0 0.0 4.33 0.0 112.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039936 Pik3cd ENSMUST00000105690 ENSMUSP00000101315 TRANSLATION protein_coding - CCDS51384.1 1 1047.0 20.0 20.8995 14.2 670.5 0.0 -4,-5 0.9446 11 16.628 MINOR ENSMUSG00000039936 Pik3cd ENSMUST00000105688 ENSMUSP00000101313 TRANSLATION protein_coding - CCDS51382.1 1 1044.0 20.0 20.8995 21.1 677.4 0.0 -4,-5 1.0 11 18.0 ALTERNATIVE:1 ENSMUSG00000039936 Pik3cd ENSMUST00000131224 ENSMUSP00000115542 TRANSLATION protein_coding stop - 3 145.0 0.0 3.58 0.0 112.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039936 Pik3cd ENSMUST00000177654 ENSMUSP00000136045 TRANSLATION protein_coding - CCDS51384.1 5 1047.0 20.0 20.8995 14.2 670.5 0.0 -4,-5 0.9446 11 16.628 MINOR ENSMUSG00000039936 Pik3cd ENSMUST00000134534 ENSMUSP00000118988 TRANSLATION protein_coding stop - 3 62.0 0.0 1.5 0.0 29.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039936 Pik3cd ENSMUST00000038859 ENSMUSP00000036434 TRANSLATION protein_coding - CCDS51383.1 1 1045.0 20.0 20.8995 21.1 677.4 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:5 ENSMUSG00000039936 Pik3cd ENSMUST00000122059 ENSMUSP00000113844 TRANSLATION protein_coding - - 1 1040.0 20.0 20.8995 14.2 672.2 0.0 -4,-5 0.7788 10 16.628 MINOR ENSMUSG00000039936 Pik3cd ENSMUST00000118704 ENSMUSP00000112863 TRANSLATION protein_coding - CCDS51381.1 1 1046.0 20.0 20.8995 12.2 668.6 0.0 -4,-5 0.9141 11 15.656 MINOR ENSMUSG00000039936 Pik3cd ENSMUST00000146612 ENSMUSP00000121843 TRANSLATION protein_coding stop - 2 117.0 0.0 2.5 0.0 112.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039936 Pik3cd ENSMUST00000105689 ENSMUSP00000101314 TRANSLATION protein_coding - CCDS51380.1 1 1043.0 20.0 20.8995 19.1 675.5 0.0 -4,-5 0.9972 11 17.028 ALTERNATIVE:1 ENSMUSG00000073834 Mup11 ENSMUST00000154733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073834 Mup11 ENSMUST00000098046 ENSMUSP00000095654 TRANSLATION protein_coding - CCDS51190.1 1 181.0 0.0 4.96 0.1 110.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073834 Mup11 ENSMUST00000148206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073834 Mup11 ENSMUST00000084544 ENSMUSP00000081592 TRANSLATION protein_coding - - 5 94.0 0.0 2.83 0.0 72.6 0.0 -4,-5 0.0 - 5.478 MINOR ENSMUSG00000101252 Ifna6 ENSMUST00000105146 ENSMUSP00000100777 TRANSLATION protein_coding - CCDS38811.1 - 189.0 3.0 1.0 6.4 211.3 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000023120 Ldc1 ENSMUST00000124528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023120 Ldc1 ENSMUST00000023884 ENSMUSP00000023884 TRANSLATION protein_coding - CCDS38890.1 1 425.0 14.0 8.33 0.0 317.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028457 Atp8b5 ENSMUST00000136262 ENSMUSP00000116428 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028457 Atp8b5 ENSMUST00000056010 - NO_TRANSLATION retained_intron ENSMUSG00000028457 Atp8b5 ENSMUST00000107942 ENSMUSP00000103575 TRANSLATION protein_coding - CCDS18091.2 1 1183.0 3.0 17.5 0.0 421.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028457 Atp8b5 ENSMUST00000107937 ENSMUSP00000103570 TRANSLATION nonsense_mediated_decay - - 2 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028457 Atp8b5 ENSMUST00000102953 ENSMUSP00000100018 TRANSLATION protein_coding - - 1 305.0 0.0 6.55 0.0 117.5 0.0 -4,-5 0.0014 - 0.0 MINOR ENSMUSG00000047613 A430005L14Rik ENSMUST00000105645 ENSMUSP00000101270 TRANSLATION protein_coding - CCDS51395.1 3 192.0 0.0 1.08 0.0 258.5 0.0 -4,-6 0.1557 3 8.358 MINOR ENSMUSG00000047613 A430005L14Rik ENSMUST00000133524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047613 A430005L14Rik ENSMUST00000141493 ENSMUSP00000121891 TRANSLATION protein_coding stop - 3 166.0 0.0 0.33 0.0 194.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000047613 A430005L14Rik ENSMUST00000147826 ENSMUSP00000116796 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000047613 A430005L14Rik ENSMUST00000128457 - NO_TRANSLATION retained_intron ENSMUSG00000047613 A430005L14Rik ENSMUST00000139967 - NO_TRANSLATION retained_intron ENSMUSG00000047613 A430005L14Rik ENSMUST00000058393 ENSMUSP00000054638 TRANSLATION protein_coding - CCDS19003.1 1 230.0 0.0 1.08 0.1 319.2 0.0 -4,0 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000028809 Srrm1 ENSMUST00000131301 ENSMUSP00000125477 TRANSLATION nonsense_mediated_decay start - 5 239.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 3 -2.0 MINOR ENSMUSG00000028809 Srrm1 ENSMUST00000131373 ENSMUSP00000122754 TRANSLATION protein_coding stop - 3 198.0 0.0 4.33 0.0 107.0 0.0 -4,-5 0.0341 3 -2.0 MINOR ENSMUSG00000028809 Srrm1 ENSMUST00000162914 - NO_TRANSLATION retained_intron ENSMUSG00000028809 Srrm1 ENSMUST00000136409 ENSMUSP00000124450 TRANSLATION nonsense_mediated_decay start - 3 140.0 0.0 2.0 0.0 50.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028809 Srrm1 ENSMUST00000030613 ENSMUSP00000030613 TRANSLATION protein_coding - - 1 897.0 0.0 4.33 0.0 107.0 0.0 -4,-5 0.8163 11 8.0 ALTERNATIVE:2 ENSMUSG00000028809 Srrm1 ENSMUST00000134019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028809 Srrm1 ENSMUST00000151251 - NO_TRANSLATION retained_intron ENSMUSG00000028809 Srrm1 ENSMUST00000154788 - NO_TRANSLATION retained_intron ENSMUSG00000028809 Srrm1 ENSMUST00000105861 ENSMUSP00000101487 TRANSLATION protein_coding - - 5 909.0 0.0 4.33 0.0 107.0 0.0 -4,-5 0.2545 12 8.0 ALTERNATIVE:2 ENSMUSG00000028809 Srrm1 ENSMUST00000134854 - NO_TRANSLATION retained_intron ENSMUSG00000028809 Srrm1 ENSMUST00000136570 - NO_TRANSLATION retained_intron ENSMUSG00000028809 Srrm1 ENSMUST00000084846 ENSMUSP00000081906 TRANSLATION protein_coding - CCDS51329.1 1 918.0 0.0 4.33 0.0 107.0 0.0 -4,-5 0.6164 12 8.0 PRINCIPAL:3 ENSMUSG00000028809 Srrm1 ENSMUST00000140050 ENSMUSP00000120952 TRANSLATION protein_coding start/stop - 5 318.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0038 3 -2.0 MINOR ENSMUSG00000028809 Srrm1 ENSMUST00000150619 - NO_TRANSLATION retained_intron ENSMUSG00000028809 Srrm1 ENSMUST00000136342 ENSMUSP00000125003 TRANSLATION protein_coding - CCDS38919.2 5 923.0 0.0 4.33 0.0 107.0 0.0 -4,-5 0.5652 12 8.0 ALTERNATIVE:2 ENSMUSG00000055900 Tmem69 ENSMUST00000129201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055900 Tmem69 ENSMUST00000069674 ENSMUSP00000065821 TRANSLATION protein_coding - CCDS51277.1 2 245.0 0.0 1.0 7.8 113.7 0.0 -4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028593 Aadacl4fm1 ENSMUST00000030328 ENSMUSP00000030328 TRANSLATION protein_coding - CCDS51366.1 1 407.0 4.0 3.75 6.3 0.0 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029032 Arhgef16 ENSMUST00000030898 ENSMUSP00000030898 TRANSLATION protein_coding - CCDS51399.1 1 713.0 0.0 9.93 7.2 206.6 0.0 -4,-5 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000029032 Arhgef16 ENSMUST00000154895 ENSMUSP00000121273 TRANSLATION protein_coding stop - 5 232.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000029032 Arhgef16 ENSMUST00000169623 ENSMUSP00000126296 TRANSLATION protein_coding - CCDS51399.1 1 713.0 0.0 9.93 7.2 206.6 0.0 -4,-5 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000029032 Arhgef16 ENSMUST00000152947 ENSMUSP00000119398 TRANSLATION protein_coding stop - 3 173.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029032 Arhgef16 ENSMUST00000143141 - NO_TRANSLATION retained_intron ENSMUSG00000029032 Arhgef16 ENSMUST00000144145 - NO_TRANSLATION retained_intron ENSMUSG00000029032 Arhgef16 ENSMUST00000129189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050234 Gja4 ENSMUST00000053753 ENSMUSP00000062320 TRANSLATION protein_coding - CCDS18667.1 1 333.0 0.0 0.25 9.2 320.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028793 Rnf19b ENSMUST00000030584 ENSMUSP00000030584 TRANSLATION protein_coding - - 5 732.0 23.0 3.83 0.4 87.5 5.0 -4,-6 0.7804 5 14.0 ALTERNATIVE:2 ENSMUSG00000028793 Rnf19b ENSMUST00000147238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028793 Rnf19b ENSMUST00000168461 ENSMUSP00000131373 TRANSLATION protein_coding - CCDS51305.1 5 731.0 23.0 3.83 0.4 87.5 5.0 -4,-6 1.0 5 14.0 PRINCIPAL:4 ENSMUSG00000028793 Rnf19b ENSMUST00000152565 ENSMUSP00000119611 TRANSLATION protein_coding stop - 5 352.0 15.0 3.83 0.0 87.5 5.0 -4,-5 0.1057 - -2.0 MINOR ENSMUSG00000028793 Rnf19b ENSMUST00000130803 ENSMUSP00000121004 TRANSLATION protein_coding start - 1 247.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 2 -2.0 MINOR ENSMUSG00000028793 Rnf19b ENSMUST00000097874 ENSMUSP00000095484 TRANSLATION protein_coding - - 5 551.0 15.0 3.83 0.0 87.5 5.0 -4,-5 0.1688 4 8.666 MINOR ENSMUSG00000047719 Ubiad1 ENSMUST00000156686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047719 Ubiad1 ENSMUST00000051633 ENSMUSP00000058502 TRANSLATION protein_coding - CCDS18936.1 1 336.0 0.0 2.0 9.9 140.2 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000025330 Padi4 ENSMUST00000137516 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025330 Padi4 ENSMUST00000143019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025330 Padi4 ENSMUST00000026381 ENSMUSP00000026381 TRANSLATION protein_coding - CCDS18854.1 1 666.0 13.0 14.2 9.8 899.7 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000025330 Padi4 ENSMUST00000137440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048806 Ifnb1 ENSMUST00000055671 ENSMUSP00000056720 TRANSLATION protein_coding - CCDS18318.1 - 182.0 3.0 1.0 0.8 139.4 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070820 Or13p5 ENSMUST00000094832 ENSMUSP00000092428 TRANSLATION protein_coding - CCDS18559.1 - 315.0 0.0 1.0 7.9 179.6 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070820 Or13p5 ENSMUST00000217522 ENSMUSP00000148988 TRANSLATION protein_coding - CCDS18559.1 3 315.0 0.0 1.0 7.9 179.6 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028568 Btf3l4 ENSMUST00000102742 ENSMUSP00000099803 TRANSLATION protein_coding - CCDS18456.1 1 158.0 0.0 2.0 36.9 89.0 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000028568 Btf3l4 ENSMUST00000102741 ENSMUSP00000099802 TRANSLATION protein_coding - CCDS18456.1 1 158.0 0.0 2.0 36.9 89.0 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000028568 Btf3l4 ENSMUST00000125707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028568 Btf3l4 ENSMUST00000102739 ENSMUSP00000099800 TRANSLATION protein_coding - CCDS18456.1 3 158.0 0.0 2.0 36.9 89.0 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000028568 Btf3l4 ENSMUST00000139464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028568 Btf3l4 ENSMUST00000102740 ENSMUSP00000099801 TRANSLATION protein_coding - CCDS18456.1 5 158.0 0.0 2.0 36.9 89.0 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000037752 Xkr8 ENSMUST00000045550 ENSMUSP00000041205 TRANSLATION protein_coding - CCDS18732.1 1 401.0 0.0 0.0 4.8 284.2 0.0 -2,-4 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000037752 Xkr8 ENSMUST00000150104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037752 Xkr8 ENSMUST00000143642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028857 Tmem222 ENSMUST00000139030 ENSMUSP00000121858 TRANSLATION nonsense_mediated_decay - - 3 121.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028857 Tmem222 ENSMUST00000153059 - NO_TRANSLATION retained_intron ENSMUSG00000028857 Tmem222 ENSMUST00000137622 ENSMUSP00000117527 TRANSLATION nonsense_mediated_decay start - 5 101.0 0.0 1.75 0.0 61.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028857 Tmem222 ENSMUST00000134781 ENSMUSP00000120532 TRANSLATION nonsense_mediated_decay start - 3 71.0 0.0 1.75 0.0 60.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028857 Tmem222 ENSMUST00000132713 - NO_TRANSLATION retained_intron ENSMUSG00000028857 Tmem222 ENSMUST00000105907 ENSMUSP00000101527 TRANSLATION protein_coding - CCDS51321.1 1 208.0 0.0 5.08 9.8 154.8 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000028751 Pla2g2e ENSMUST00000105803 ENSMUSP00000101429 TRANSLATION protein_coding - - 5 80.0 0.0 0.0 0.0 0.0 0.0 -2,1 0.0004 - 0.0 MINOR ENSMUSG00000028751 Pla2g2e ENSMUST00000105804 ENSMUSP00000101430 TRANSLATION protein_coding - CCDS18835.1 1 142.0 3.0 4.0 7.2 132.4 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000028751 Pla2g2e ENSMUST00000030531 ENSMUSP00000030531 TRANSLATION protein_coding - CCDS18835.1 1 142.0 3.0 4.0 7.2 132.4 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000078722 Gm12394 ENSMUST00000107981 ENSMUSP00000103615 TRANSLATION protein_coding stop - 5 1011.0 0.0 0.0 0.0 135.6 0.0 -4,-7 0.8668 - -2.0 PRINCIPAL:1 ENSMUSG00000028307 Aldob ENSMUST00000029987 ENSMUSP00000029987 TRANSLATION protein_coding - CCDS18176.1 1 364.0 14.0 7.25 33.9 584.2 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000028307 Aldob ENSMUST00000144372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028307 Aldob ENSMUST00000148415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041351 Rap1gap ENSMUST00000144059 - NO_TRANSLATION retained_intron ENSMUSG00000041351 Rap1gap ENSMUST00000097837 ENSMUSP00000095448 TRANSLATION protein_coding - CCDS84809.1 1 694.0 0.0 9.9 1.5 256.5 0.0 -4,-2 0.5161 22 12.232 MINOR ENSMUSG00000041351 Rap1gap ENSMUST00000151601 - NO_TRANSLATION retained_intron ENSMUSG00000041351 Rap1gap ENSMUST00000139831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041351 Rap1gap ENSMUST00000123134 - NO_TRANSLATION retained_intron ENSMUSG00000041351 Rap1gap ENSMUST00000150928 ENSMUSP00000123561 TRANSLATION protein_coding stop - 3 240.0 0.0 5.05 0.0 83.1 0.0 -4,-1 0.0 7 -2.0 MINOR ENSMUSG00000041351 Rap1gap ENSMUST00000047243 ENSMUSP00000042473 TRANSLATION protein_coding - CCDS38925.1 5 727.0 0.0 9.9 5.3 256.5 0.0 -4,-1 1.0 23 14.0 PRINCIPAL:1 ENSMUSG00000041351 Rap1gap ENSMUST00000148054 - NO_TRANSLATION retained_intron ENSMUSG00000041351 Rap1gap ENSMUST00000141306 ENSMUSP00000122315 TRANSLATION protein_coding start/stop - 5 405.0 0.0 3.5 0.0 107.3 0.0 -4,-6 0.0 15 -2.0 MINOR ENSMUSG00000041351 Rap1gap ENSMUST00000131536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041351 Rap1gap ENSMUST00000152567 ENSMUSP00000115391 TRANSLATION protein_coding stop - 5 165.0 0.0 1.275 0.0 42.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000041351 Rap1gap ENSMUST00000105835 ENSMUSP00000101461 TRANSLATION protein_coding - CCDS57306.1 5 729.0 0.0 9.9 0.0 256.5 0.0 -4,-1 0.4224 21 12.0 MINOR ENSMUSG00000041351 Rap1gap ENSMUST00000123011 - NO_TRANSLATION retained_intron ENSMUSG00000041351 Rap1gap ENSMUST00000156683 - NO_TRANSLATION retained_intron ENSMUSG00000034035 Ccdc17 ENSMUST00000148260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034035 Ccdc17 ENSMUST00000051869 ENSMUSP00000059848 TRANSLATION protein_coding - CCDS18512.1 1 565.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.8758 1 3.0 PRINCIPAL:1 ENSMUSG00000034035 Ccdc17 ENSMUST00000146777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034035 Ccdc17 ENSMUST00000121907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034035 Ccdc17 ENSMUST00000151441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096750 Gm11757 ENSMUST00000107321 ENSMUSP00000102942 TRANSLATION protein_coding - CCDS51208.1 1 360.0 0.0 1.6 0.0 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096750 Gm11757 ENSMUST00000107320 ENSMUSP00000102941 TRANSLATION protein_coding - - 5 232.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0218 - 3.0 MINOR ENSMUSG00000006398 Cdc20 ENSMUST00000183942 ENSMUSP00000139345 TRANSLATION nonsense_mediated_decay start - 3 197.0 0.0 4.15 0.0 33.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006398 Cdc20 ENSMUST00000006565 ENSMUSP00000006565 TRANSLATION protein_coding - CCDS18551.1 1 499.0 0.0 9.41 10.3 108.3 0.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000006398 Cdc20 ENSMUST00000151302 - NO_TRANSLATION retained_intron ENSMUSG00000028332 Hemgn ENSMUST00000107764 ENSMUSP00000103393 TRANSLATION protein_coding - CCDS18150.1 1 503.0 0.0 1.0 0.0 0.0 0.0 -4,-6 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000028332 Hemgn ENSMUST00000071096 ENSMUSP00000066383 TRANSLATION protein_coding - CCDS18150.1 1 503.0 0.0 1.0 0.0 0.0 0.0 -4,-6 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000078506 Aadacl4fm2 ENSMUST00000105748 ENSMUSP00000101374 TRANSLATION protein_coding - CCDS38955.1 5 406.0 3.0 3.75 3.3 0.0 0.0 -1,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000076438 Oxct2b ENSMUST00000102648 ENSMUSP00000099708 TRANSLATION protein_coding - CCDS18609.1 - 520.0 16.0 1.0 2.8 383.9 0.0 3,4 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000028236 Sdr16c5 ENSMUST00000040925 ENSMUSP00000046298 TRANSLATION protein_coding - CCDS17944.1 1 309.0 27.0 6.0 14.5 157.2 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000028236 Sdr16c5 ENSMUST00000126274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007613 Tgfbr1 ENSMUST00000126171 ENSMUSP00000123761 TRANSLATION protein_coding - - 5 434.0 20.0 7.5 7.0 186.1 2.0 -4,-6 0.3935 7 13.144 MINOR ENSMUSG00000007613 Tgfbr1 ENSMUST00000007757 ENSMUSP00000007757 TRANSLATION protein_coding - CCDS18160.1 1 503.0 20.0 8.5 6.2 226.8 2.0 4,-1 1.0 7 15.734 PRINCIPAL:4 ENSMUSG00000007613 Tgfbr1 ENSMUST00000044234 ENSMUSP00000048501 TRANSLATION protein_coding - CCDS84728.1 1 499.0 20.0 8.5 6.2 226.8 2.0 4,-1 0.9615 7 15.734 ALTERNATIVE:1 ENSMUSG00000007613 Tgfbr1 ENSMUST00000123962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007613 Tgfbr1 ENSMUST00000107725 ENSMUSP00000103353 TRANSLATION protein_coding - CCDS84729.1 1 420.0 20.0 6.5 0.0 186.1 2.0 -4,-5 0.0108 5 9.14 MINOR ENSMUSG00000028841 Cnksr1 ENSMUST00000145998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028841 Cnksr1 ENSMUST00000124181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028841 Cnksr1 ENSMUST00000030645 ENSMUSP00000030645 TRANSLATION protein_coding - CCDS38912.1 1 700.0 0.0 3.545 0.1 134.2 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000028841 Cnksr1 ENSMUST00000144504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028841 Cnksr1 ENSMUST00000146283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028648 Ndufs5 ENSMUST00000137312 ENSMUSP00000123236 TRANSLATION protein_coding stop - 2 91.0 0.0 1.5 0.0 175.5 0.0 -4,-5 0.0219 4 -2.0 MINOR ENSMUSG00000028648 Ndufs5 ENSMUST00000106206 ENSMUSP00000101812 TRANSLATION protein_coding - CCDS18618.1 3 106.0 0.0 2.25 36.9 191.1 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028648 Ndufs5 ENSMUST00000106207 ENSMUSP00000101813 TRANSLATION protein_coding - CCDS18618.1 1 106.0 0.0 2.25 36.9 191.1 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028648 Ndufs5 ENSMUST00000030401 ENSMUSP00000030401 TRANSLATION protein_coding - CCDS18618.1 1 106.0 0.0 2.25 36.9 191.1 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000050854 Tmem125 ENSMUST00000128098 ENSMUSP00000115304 TRANSLATION protein_coding stop - 3 124.0 0.0 0.0 0.0 174.2 4.0 -4,-7 0.0835 - -2.0 MINOR ENSMUSG00000050854 Tmem125 ENSMUST00000154025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050854 Tmem125 ENSMUST00000060214 ENSMUSP00000063157 TRANSLATION protein_coding - CCDS51285.1 2 216.0 0.0 0.0 1.0 173.9 6.0 -4,-7 1.0 - 5.982 PRINCIPAL:1 ENSMUSG00000050854 Tmem125 ENSMUST00000150044 ENSMUSP00000117871 TRANSLATION protein_coding stop - 1 72.0 0.0 0.0 0.0 91.7 2.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000050854 Tmem125 ENSMUST00000156191 ENSMUSP00000117286 TRANSLATION protein_coding stop - 2 55.0 0.0 0.0 0.0 58.7 2.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000096674 Mup15 ENSMUST00000095049 ENSMUSP00000092659 TRANSLATION protein_coding - CCDS51196.1 2 180.0 0.0 4.88 0.0 109.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028423 Nfx1 ENSMUST00000091614 ENSMUSP00000089203 TRANSLATION protein_coding - CCDS71359.1 1 804.0 4.0 0.0 0.0 114.1 0.0 -4,-5 0.0512 22 4.348 MINOR ENSMUSG00000028423 Nfx1 ENSMUST00000124595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028423 Nfx1 ENSMUST00000098143 ENSMUSP00000095747 TRANSLATION protein_coding - CCDS18054.1 1 1114.0 4.0 0.0 6.1 208.3 0.0 -4,-5 1.0 27 12.0 PRINCIPAL:1 ENSMUSG00000028423 Nfx1 ENSMUST00000131305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028423 Nfx1 ENSMUST00000143798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028423 Nfx1 ENSMUST00000030133 ENSMUSP00000030133 TRANSLATION protein_coding - CCDS71360.1 1 818.0 4.0 0.0 0.4 114.1 0.0 -4,-5 0.0554 22 4.348 MINOR ENSMUSG00000028423 Nfx1 ENSMUST00000136717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051056 Gja10 ENSMUST00000219644 ENSMUSP00000151323 TRANSLATION protein_coding - - 5 492.0 0.0 0.25 2.2 318.0 5.0 -3,-7 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000051056 Gja10 ENSMUST00000056517 ENSMUSP00000061742 TRANSLATION protein_coding - CCDS18015.1 - 505.0 0.0 0.25 0.4 318.0 5.0 -3,-7 0.6457 - 8.0 ALTERNATIVE:2 ENSMUSG00000049488 Tmem67 ENSMUST00000151859 - NO_TRANSLATION retained_intron ENSMUSG00000049488 Tmem67 ENSMUST00000147746 - NO_TRANSLATION retained_intron ENSMUSG00000049488 Tmem67 ENSMUST00000146140 - NO_TRANSLATION retained_intron ENSMUSG00000049488 Tmem67 ENSMUST00000050686 ENSMUSP00000052644 TRANSLATION protein_coding - CCDS17974.1 1 995.0 0.0 0.0 5.8 1163.4 5.0 1,4 1.0 14 8.0 PRINCIPAL:1 ENSMUSG00000049488 Tmem67 ENSMUST00000131145 ENSMUSP00000115154 TRANSLATION nonsense_mediated_decay start - 1 207.0 0.0 0.0 0.0 0.0 0.0 1,3 0.005 2 -2.0 MINOR ENSMUSG00000049488 Tmem67 ENSMUST00000108293 ENSMUSP00000103928 TRANSLATION protein_coding - - 5 1061.0 0.0 0.0 0.0 1163.4 5.0 -4,-7 0.2475 14 6.0 MINOR ENSMUSG00000028294 Cfap206 ENSMUST00000135563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028294 Cfap206 ENSMUST00000137514 ENSMUSP00000116947 TRANSLATION protein_coding stop - 5 210.0 0.0 0.28 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028294 Cfap206 ENSMUST00000160209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028294 Cfap206 ENSMUST00000162495 ENSMUSP00000124760 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028294 Cfap206 ENSMUST00000029971 ENSMUSP00000029971 TRANSLATION protein_coding - CCDS84713.1 5 622.0 0.0 0.4555 15.7 350.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000028294 Cfap206 ENSMUST00000108136 ENSMUSP00000103771 TRANSLATION protein_coding - CCDS18031.2 1 504.0 0.0 0.4555 0.0 350.1 0.0 -4,-5 0.2456 2 12.0 MINOR ENSMUSG00000028454 Pigo ENSMUST00000098109 ENSMUSP00000095713 TRANSLATION protein_coding - CCDS18088.1 1 1101.0 6.0 0.7 0.0 57.7 21.0 -1,-5 0.5909 9 12.0 ALTERNATIVE:2 ENSMUSG00000028454 Pigo ENSMUST00000067481 ENSMUSP00000069749 TRANSLATION protein_coding - CCDS84720.1 5 1069.0 6.0 0.7 0.7 57.7 21.0 1,-3 1.0 9 12.0 PRINCIPAL:2 ENSMUSG00000028454 Pigo ENSMUST00000149333 ENSMUSP00000114917 TRANSLATION protein_coding start - 5 679.0 6.0 0.7 1.0 57.7 8.0 -1,-5 0.1794 4 -2.0 MINOR ENSMUSG00000028454 Pigo ENSMUST00000155429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028454 Pigo ENSMUST00000131506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051279 Gdf6 ENSMUST00000057613 ENSMUSP00000062884 TRANSLATION protein_coding - CCDS17960.1 1 454.0 0.0 0.5 2.5 188.1 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000028807 Zbtb8a ENSMUST00000030610 ENSMUSP00000030610 TRANSLATION protein_coding - CCDS18690.1 1 434.0 7.0 1.36 4.6 94.4 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000028385 Snx30 ENSMUST00000145199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028385 Snx30 ENSMUST00000123665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028385 Snx30 ENSMUST00000030080 ENSMUSP00000030080 TRANSLATION protein_coding - CCDS18226.1 1 437.0 0.0 3.066 14.8 112.0 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000028385 Snx30 ENSMUST00000143185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038816 Ctnnal1 ENSMUST00000131231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038816 Ctnnal1 ENSMUST00000132764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038816 Ctnnal1 ENSMUST00000134915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038816 Ctnnal1 ENSMUST00000154511 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038816 Ctnnal1 ENSMUST00000107612 ENSMUSP00000103237 TRANSLATION protein_coding - - 3 219.0 0.0 1.765 0.0 90.5 0.0 -4,-7 0.0 4 0.0 MINOR ENSMUSG00000038816 Ctnnal1 ENSMUST00000134754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038816 Ctnnal1 ENSMUST00000045142 ENSMUSP00000036487 TRANSLATION protein_coding - CCDS18200.1 1 731.0 0.0 6.23 1.3 195.6 0.0 -4,-7 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000038816 Ctnnal1 ENSMUST00000136308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038816 Ctnnal1 ENSMUST00000127908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028533 Izumo3 ENSMUST00000143542 ENSMUSP00000121187 TRANSLATION protein_coding start - 1 193.0 0.0 4.83 0.0 83.2 1.0 -4,-6 0.0027 - -2.0 MINOR ENSMUSG00000028533 Izumo3 ENSMUST00000107108 ENSMUSP00000102725 TRANSLATION protein_coding - CCDS51231.1 1 263.0 0.0 5.83 0.1 140.2 1.0 3,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000028608 Czib ENSMUST00000156888 - NO_TRANSLATION retained_intron ENSMUSG00000028608 Czib ENSMUST00000106727 ENSMUSP00000102338 TRANSLATION protein_coding - - 1 168.0 4.0 4.18 0.0 157.8 0.0 -4,-6 0.0022 5 12.286 MINOR ENSMUSG00000028608 Czib ENSMUST00000030346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028608 Czib ENSMUST00000128474 ENSMUSP00000115797 TRANSLATION protein_coding stop - 3 66.0 2.0 1.75 0.0 63.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028608 Czib ENSMUST00000134254 ENSMUSP00000119309 TRANSLATION protein_coding start - 3 57.0 0.0 1.25 0.0 38.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028608 Czib ENSMUST00000135454 ENSMUSP00000114234 TRANSLATION protein_coding - CCDS84769.1 1 160.0 4.0 4.91 35.1 195.4 0.0 -4,-6 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000028608 Czib ENSMUST00000153593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028608 Czib ENSMUST00000119394 ENSMUSP00000113991 TRANSLATION protein_coding - - 3 153.0 4.0 4.18 0.0 157.8 0.0 -4,-6 0.0094 5 12.286 MINOR ENSMUSG00000028608 Czib ENSMUST00000125107 ENSMUSP00000119565 TRANSLATION protein_coding - CCDS18442.1 1 196.0 4.0 4.91 0.0 195.4 0.0 -4,-2 0.1871 6 16.0 MINOR ENSMUSG00000028608 Czib ENSMUST00000120473 ENSMUSP00000113866 TRANSLATION protein_coding - - 2 155.0 4.0 4.16 0.0 156.8 0.0 -4,-6 0.0094 5 12.184 MINOR ENSMUSG00000028608 Czib ENSMUST00000106726 ENSMUSP00000102337 TRANSLATION protein_coding - - 5 138.0 4.0 4.16 0.0 135.7 0.0 -4,-6 0.0162 6 10.918 MINOR ENSMUSG00000028608 Czib ENSMUST00000132417 ENSMUSP00000117717 TRANSLATION nonsense_mediated_decay - - 1 110.0 2.0 1.25 0.0 45.5 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000028608 Czib ENSMUST00000127715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028608 Czib ENSMUST00000030347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034171 Faah ENSMUST00000150614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034171 Faah ENSMUST00000154249 - NO_TRANSLATION retained_intron ENSMUSG00000034171 Faah ENSMUST00000143724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034171 Faah ENSMUST00000125761 - NO_TRANSLATION retained_intron ENSMUSG00000034171 Faah ENSMUST00000150668 - NO_TRANSLATION retained_intron ENSMUSG00000034171 Faah ENSMUST00000049095 ENSMUSP00000041543 TRANSLATION protein_coding - CCDS18501.1 1 579.0 7.0 13.3 8.2 404.9 0.0 -1,-4 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000034171 Faah ENSMUST00000133225 - NO_TRANSLATION retained_intron ENSMUSG00000034171 Faah ENSMUST00000156126 - NO_TRANSLATION retained_intron ENSMUSG00000039298 Cdk5rap2 ENSMUST00000140108 ENSMUSP00000119151 TRANSLATION protein_coding start - 3 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039298 Cdk5rap2 ENSMUST00000124251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039298 Cdk5rap2 ENSMUST00000138561 ENSMUSP00000116928 TRANSLATION protein_coding start/stop - 5 390.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0024 2 -2.0 MINOR ENSMUSG00000039298 Cdk5rap2 ENSMUST00000076541 ENSMUSP00000075856 TRANSLATION nonsense_mediated_decay - - 1 76.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039298 Cdk5rap2 ENSMUST00000144099 ENSMUSP00000119891 TRANSLATION protein_coding - CCDS38779.1 1 1822.0 0.0 1.6 0.1 80.8 0.0 -4,-5 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000039298 Cdk5rap2 ENSMUST00000126416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040270 Bach2 ENSMUST00000146748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040270 Bach2 ENSMUST00000171600 ENSMUSP00000131592 TRANSLATION protein_coding - CCDS51135.1 1 839.0 0.0 2.0 5.6 144.8 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000040270 Bach2 ENSMUST00000125263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040270 Bach2 ENSMUST00000149201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040270 Bach2 ENSMUST00000156430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040270 Bach2 ENSMUST00000037416 ENSMUSP00000043693 TRANSLATION protein_coding - - 5 716.0 0.0 2.0 0.0 144.8 0.0 -4,-5 0.0483 4 12.0 MINOR ENSMUSG00000040270 Bach2 ENSMUST00000108180 ENSMUSP00000103815 TRANSLATION protein_coding - CCDS51135.1 5 839.0 0.0 2.0 5.6 144.8 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000028822 Tmem50a ENSMUST00000105863 ENSMUSP00000101489 TRANSLATION protein_coding - CCDS18779.1 3 157.0 0.0 0.0 36.9 158.7 4.0 -4,-7 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000028822 Tmem50a ENSMUST00000030626 ENSMUSP00000030626 TRANSLATION protein_coding - CCDS18779.1 1 157.0 0.0 0.0 36.9 158.7 4.0 -4,-7 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000042677 Zc3h12a ENSMUST00000036188 ENSMUSP00000037172 TRANSLATION protein_coding - CCDS18638.1 1 596.0 4.0 3.8 5.2 214.8 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000042677 Zc3h12a ENSMUST00000131685 - NO_TRANSLATION retained_intron ENSMUSG00000055963 Triqk ENSMUST00000183345 ENSMUSP00000138966 TRANSLATION protein_coding - CCDS71348.1 2 86.0 0.0 1.35 31.6 136.3 1.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000055963 Triqk ENSMUST00000156536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055963 Triqk ENSMUST00000143186 ENSMUSP00000139205 TRANSLATION protein_coding - CCDS71348.1 1 86.0 0.0 1.35 31.6 136.3 1.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028668 Eloa ENSMUST00000030427 ENSMUSP00000030427 TRANSLATION protein_coding - CCDS18798.1 1 773.0 0.0 2.05 0.4 145.1 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000028565 Nfia ENSMUST00000092532 ENSMUSP00000130032 TRANSLATION protein_coding - CCDS51234.1 1 466.0 0.0 1.0 13.5 493.7 0.0 -4,-5 0.6998 4 9.626 MINOR ENSMUSG00000028565 Nfia ENSMUST00000107062 ENSMUSP00000102677 TRANSLATION protein_coding - - 5 498.0 0.0 1.0 13.6 513.0 0.0 -4,-5 0.6589 4 10.8 MINOR ENSMUSG00000028565 Nfia ENSMUST00000133011 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028565 Nfia ENSMUST00000148930 ENSMUSP00000122641 TRANSLATION protein_coding start/stop - 5 274.0 0.0 0.0 0.0 328.4 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000028565 Nfia ENSMUST00000107057 ENSMUSP00000102672 TRANSLATION protein_coding - - 5 380.0 0.0 1.0 0.0 408.3 0.0 -4,-5 0.0216 3 6.0 MINOR ENSMUSG00000028565 Nfia ENSMUST00000052018 ENSMUSP00000099856 TRANSLATION protein_coding - - 5 487.0 0.0 1.0 2.0 568.0 0.0 -4,-5 0.2196 5 12.168 MINOR ENSMUSG00000028565 Nfia ENSMUST00000075448 ENSMUSP00000074899 TRANSLATION protein_coding - CCDS18373.1 1 509.0 0.0 1.0 25.0 568.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000028565 Nfia ENSMUST00000152023 ENSMUSP00000114880 TRANSLATION protein_coding stop - 5 225.0 0.0 1.0 0.0 165.9 0.0 -4,-6 0.0226 1 -2.0 MINOR ENSMUSG00000028894 Inpp5b ENSMUST00000145359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028894 Inpp5b ENSMUST00000142446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028894 Inpp5b ENSMUST00000094782 ENSMUSP00000092375 TRANSLATION protein_coding - CCDS38876.1 1 993.0 2.0 18.43 5.2 341.7 0.0 -4,-5 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000028894 Inpp5b ENSMUST00000154229 ENSMUSP00000115176 TRANSLATION protein_coding stop - 5 219.0 0.0 3.83 0.0 161.5 0.0 -4,-5 0.0001 3 -2.0 MINOR ENSMUSG00000028894 Inpp5b ENSMUST00000184454 ENSMUSP00000139221 TRANSLATION nonsense_mediated_decay - - 1 825.0 2.0 14.63 0.0 251.8 0.0 -4,-5 0.0043 18 -2.0 MINOR ENSMUSG00000028894 Inpp5b ENSMUST00000135971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028894 Inpp5b ENSMUST00000153837 ENSMUSP00000122568 TRANSLATION protein_coding stop - 3 186.0 0.0 4.83 0.0 199.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028894 Inpp5b ENSMUST00000142652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035696 Rnf38 ENSMUST00000153384 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035696 Rnf38 ENSMUST00000137194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035696 Rnf38 ENSMUST00000102934 ENSMUSP00000099998 TRANSLATION protein_coding - CCDS18123.1 5 432.0 8.0 2.95375 13.3 47.1 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000035696 Rnf38 ENSMUST00000148869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035696 Rnf38 ENSMUST00000147302 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035696 Rnf38 ENSMUST00000153116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035696 Rnf38 ENSMUST00000107836 ENSMUSP00000103467 TRANSLATION protein_coding - CCDS18123.1 5 432.0 8.0 2.95375 13.3 47.1 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000035696 Rnf38 ENSMUST00000128426 ENSMUSP00000119889 TRANSLATION protein_coding stop - 5 220.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0007 - -2.0 MINOR ENSMUSG00000035696 Rnf38 ENSMUST00000152216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035696 Rnf38 ENSMUST00000145378 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035696 Rnf38 ENSMUST00000045793 ENSMUSP00000038477 TRANSLATION protein_coding - CCDS18123.1 1 432.0 8.0 2.95375 13.3 47.1 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000035696 Rnf38 ENSMUST00000136730 ENSMUSP00000116642 TRANSLATION nonsense_mediated_decay - - 1 344.0 0.0 0.12375 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000035696 Rnf38 ENSMUST00000098098 ENSMUSP00000095702 TRANSLATION protein_coding - CCDS18122.1 1 464.0 8.0 2.95375 10.8 47.1 0.0 -4,-7 0.9018 - 17.188 ALTERNATIVE:1 ENSMUSG00000035696 Rnf38 ENSMUST00000145760 ENSMUSP00000121329 TRANSLATION protein_coding stop - 5 202.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000035696 Rnf38 ENSMUST00000143337 ENSMUSP00000122342 TRANSLATION protein_coding stop - 5 187.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000035696 Rnf38 ENSMUST00000123844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035696 Rnf38 ENSMUST00000129621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028463 Car9 ENSMUST00000126750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028463 Car9 ENSMUST00000030183 ENSMUSP00000030183 TRANSLATION protein_coding - CCDS18099.1 1 437.0 3.0 6.278 1.1 270.0 1.0 1,-1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000028463 Car9 ENSMUST00000138073 ENSMUSP00000114493 TRANSLATION protein_coding start/stop - 1 237.0 3.0 4.278 0.0 161.3 1.0 -4,-5 0.0024 2 -2.0 MINOR ENSMUSG00000028463 Car9 ENSMUST00000129996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028463 Car9 ENSMUST00000154251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028463 Car9 ENSMUST00000128232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028463 Car9 ENSMUST00000124114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049878 Rlf ENSMUST00000222814 - NO_TRANSLATION retained_intron ENSMUSG00000049878 Rlf ENSMUST00000056635 ENSMUSP00000050825 TRANSLATION protein_coding - CCDS84789.1 5 1918.0 47.0 0.0 0.0 33.2 0.0 -4,-5 0.511 10 8.0 ALTERNATIVE:2 ENSMUSG00000049878 Rlf ENSMUST00000142647 - NO_TRANSLATION retained_intron ENSMUSG00000049878 Rlf ENSMUST00000168615 ENSMUSP00000127068 TRANSLATION protein_coding - - 5 1808.0 47.0 0.0 0.0 33.2 0.0 -4,-7 0.9066 10 8.0 PRINCIPAL:2 ENSMUSG00000078626 Gm12790 ENSMUST00000106916 ENSMUSP00000102529 TRANSLATION protein_coding - - 5 201.0 0.0 1.2 0.0 0.0 0.0 -4,-6 0.6678 - 6.0 PRINCIPAL:1 ENSMUSG00000066026 Dhrs3 ENSMUST00000084184 ENSMUSP00000081200 TRANSLATION nonsense_mediated_decay - - 1 123.0 16.0 3.08 0.0 56.2 1.0 2,-3 0.0054 3 -2.0 MINOR ENSMUSG00000066026 Dhrs3 ENSMUST00000105744 ENSMUSP00000101370 TRANSLATION protein_coding - - 1 236.0 24.0 5.5 0.0 56.2 0.0 -4,-7 0.0 4 5.592 MINOR ENSMUSG00000066026 Dhrs3 ENSMUST00000142808 ENSMUSP00000122578 TRANSLATION protein_coding stop - 3 146.0 19.0 3.5 0.0 107.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000066026 Dhrs3 ENSMUST00000154208 ENSMUSP00000122552 TRANSLATION protein_coding - CCDS18912.1 1 302.0 30.0 7.25 30.1 138.0 1.0 2,-3 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000066026 Dhrs3 ENSMUST00000133265 - NO_TRANSLATION retained_intron ENSMUSG00000066026 Dhrs3 ENSMUST00000171001 ENSMUSP00000126154 TRANSLATION protein_coding - CCDS51368.1 5 276.0 30.0 6.5 0.0 138.0 0.0 -4,-7 0.0372 5 16.5 MINOR ENSMUSG00000066026 Dhrs3 ENSMUST00000128926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029048 Rer1 ENSMUST00000149796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029048 Rer1 ENSMUST00000030914 ENSMUSP00000030914 TRANSLATION protein_coding - CCDS19022.1 1 196.0 0.0 0.0 34.9 0.0 0.0 -4,-5 1.0 3 4.0 PRINCIPAL:1 ENSMUSG00000029048 Rer1 ENSMUST00000125357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071015 Gm136 ENSMUST00000095129 ENSMUSP00000092748 TRANSLATION protein_coding - CCDS18032.1 1 328.0 0.0 4.0 7.1 0.0 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000078486 Perm1 ENSMUST00000105572 ENSMUSP00000101197 TRANSLATION protein_coding - CCDS51406.1 1 807.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9401 9 0.0 PRINCIPAL:1 ENSMUSG00000070983 Or13d1 ENSMUST00000095084 ENSMUSP00000092699 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 10.7 181.4 7.0 -4,-5 0.9391 - 11.0 ALTERNATIVE:1 ENSMUSG00000070983 Or13d1 ENSMUST00000215127 ENSMUSP00000150038 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 10.7 181.4 7.0 -4,-5 0.9391 - 11.0 ALTERNATIVE:1 ENSMUSG00000070983 Or13d1 ENSMUST00000215010 ENSMUSP00000150409 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 10.7 181.4 7.0 -4,-5 0.9391 - 11.0 ALTERNATIVE:1 ENSMUSG00000070983 Or13d1 ENSMUST00000172257 ENSMUSP00000133100 TRANSLATION protein_coding - CCDS51176.1 - 312.0 0.0 1.0 7.8 181.4 7.0 -4,-5 1.0 - 10.103 PRINCIPAL:4 ENSMUSG00000034359 Skint2 ENSMUST00000106559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034359 Skint2 ENSMUST00000186969 ENSMUSP00000139831 TRANSLATION protein_coding - CCDS38840.2 1 400.0 0.0 2.6 0.0 87.8 4.0 1,-2 0.6273 - 8.0 ALTERNATIVE:2 ENSMUSG00000034359 Skint2 ENSMUST00000058791 ENSMUSP00000061011 TRANSLATION protein_coding - - 1 237.0 0.0 2.0 0.0 87.8 0.0 1,-2 0.0832 - 6.614 MINOR ENSMUSG00000034359 Skint2 ENSMUST00000106560 ENSMUSP00000102170 TRANSLATION protein_coding - - 1 315.0 0.0 2.6 0.0 87.8 3.0 1,-2 0.8439 - 8.0 PRINCIPAL:4 ENSMUSG00000095270 Ifna9 ENSMUST00000102807 ENSMUSP00000099871 TRANSLATION protein_coding - CCDS18321.1 - 190.0 3.0 1.0 3.9 205.9 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000093962 Gm11756 ENSMUST00000107312 ENSMUSP00000102933 TRANSLATION protein_coding - - 5 228.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.034 - 3.0 MINOR ENSMUSG00000093962 Gm11756 ENSMUST00000107310 ENSMUSP00000102931 TRANSLATION protein_coding - - 5 356.0 0.0 1.6 0.0 0.0 0.0 -4,-7 0.6794 - 6.0 PRINCIPAL:1 ENSMUSG00000078554 Fam229a ENSMUST00000106043 ENSMUSP00000101658 TRANSLATION protein_coding - CCDS38885.1 1 128.0 0.0 0.0 6.5 51.5 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000078554 Fam229a ENSMUST00000135698 - NO_TRANSLATION retained_intron ENSMUSG00000078498 Zfp988 ENSMUST00000148762 ENSMUSP00000120413 TRANSLATION protein_coding - - 5 633.0 56.0 2.55 0.0 406.9 0.0 -4,-7 0.8165 - 18.0 PRINCIPAL:1 ENSMUSG00000078498 Zfp988 ENSMUST00000166764 ENSMUSP00000127018 TRANSLATION protein_coding start/stop - - 21.0 2.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028701 Lurap1 ENSMUST00000030469 ENSMUSP00000030469 TRANSLATION protein_coding - CCDS51275.1 1 239.0 0.0 0.4 9.9 171.7 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000028701 Lurap1 ENSMUST00000135982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048001 Hes5 ENSMUST00000151480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048001 Hes5 ENSMUST00000049621 ENSMUSP00000051118 TRANSLATION protein_coding - CCDS19018.1 1 167.0 0.0 1.2 5.4 89.7 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028232 Tmem68 ENSMUST00000142503 - NO_TRANSLATION retained_intron ENSMUSG00000028232 Tmem68 ENSMUST00000154922 ENSMUSP00000123591 TRANSLATION nonsense_mediated_decay - - 1 170.0 0.0 2.0 0.0 0.0 1.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000028232 Tmem68 ENSMUST00000134451 ENSMUSP00000121921 TRANSLATION protein_coding stop - 5 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028232 Tmem68 ENSMUST00000029891 ENSMUSP00000029891 TRANSLATION protein_coding - CCDS17937.1 1 329.0 0.0 5.75 25.9 34.8 1.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000028232 Tmem68 ENSMUST00000150676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028232 Tmem68 ENSMUST00000134806 - NO_TRANSLATION retained_intron ENSMUSG00000028975 Pex14 ENSMUST00000103217 ENSMUSP00000099506 TRANSLATION protein_coding - CCDS18950.1 1 376.0 0.0 2.05 14.0 0.0 0.0 -4,-5 1.0 11 10.0 PRINCIPAL:1 ENSMUSG00000028975 Pex14 ENSMUST00000128067 - NO_TRANSLATION retained_intron ENSMUSG00000028975 Pex14 ENSMUST00000148203 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028975 Pex14 ENSMUST00000134747 ENSMUSP00000116791 TRANSLATION nonsense_mediated_decay - - 3 78.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000028975 Pex14 ENSMUST00000154860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066152 Slc31a2 ENSMUST00000107468 ENSMUSP00000103092 TRANSLATION protein_coding - CCDS71401.1 5 141.0 0.0 0.6 14.5 103.6 1.0 -4,-6 0.972 - 12.0 ALTERNATIVE:1 ENSMUSG00000066152 Slc31a2 ENSMUST00000084530 ENSMUSP00000081578 TRANSLATION protein_coding - CCDS18236.1 1 143.0 0.0 0.6 14.5 103.6 1.0 -4,-5 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000066152 Slc31a2 ENSMUST00000107467 ENSMUSP00000103091 TRANSLATION protein_coding - CCDS71401.1 1 141.0 0.0 0.6 14.5 103.6 1.0 -4,-6 0.972 - 12.0 ALTERNATIVE:1 ENSMUSG00000047671 Dynlt4 ENSMUST00000062206 ENSMUSP00000052243 TRANSLATION protein_coding - CCDS18528.1 1 219.0 0.0 2.0 9.6 78.8 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000047671 Dynlt4 ENSMUST00000144269 ENSMUSP00000122605 TRANSLATION protein_coding stop - 3 178.0 0.0 1.0 0.0 27.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000047671 Dynlt4 ENSMUST00000134074 ENSMUSP00000114182 TRANSLATION protein_coding stop - 3 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006442 Srm ENSMUST00000140129 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006442 Srm ENSMUST00000152701 - NO_TRANSLATION retained_intron ENSMUSG00000006442 Srm ENSMUST00000006611 ENSMUSP00000006611 TRANSLATION protein_coding - CCDS18940.1 1 302.0 20.0 6.33 10.3 244.6 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000042763 Maneal ENSMUST00000064444 ENSMUSP00000066000 TRANSLATION protein_coding - CCDS18629.1 3 452.0 0.0 3.55 4.6 520.8 0.0 2,-4 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000063245 Zfp993 ENSMUST00000070932 ENSMUSP00000065923 TRANSLATION protein_coding stop - 3 129.0 0.0 1.165 0.0 70.3 0.0 -4,-6 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000063245 Zfp993 ENSMUST00000130825 ENSMUSP00000121301 TRANSLATION protein_coding stop - 5 313.0 8.0 2.165 0.0 118.1 0.0 -4,-6 0.7376 - -2.0 PRINCIPAL:5 ENSMUSG00000042116 Vwa1 ENSMUST00000042196 ENSMUSP00000040405 TRANSLATION protein_coding - CCDS19039.1 1 415.0 5.0 1.74 4.4 182.9 0.0 3,-4 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000028878 Fam76a ENSMUST00000097856 ENSMUSP00000095468 TRANSLATION protein_coding - CCDS51320.1 1 278.0 9.0 3.75 4.2 353.4 0.0 -4,-7 0.2195 3 17.128 MINOR ENSMUSG00000028878 Fam76a ENSMUST00000030696 ENSMUSP00000030696 TRANSLATION protein_coding - CCDS18738.1 1 307.0 9.0 3.75 23.0 377.6 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000028878 Fam76a ENSMUST00000148667 ENSMUSP00000121892 TRANSLATION protein_coding stop - 2 129.0 5.0 3.132 0.0 212.5 0.0 -4,-5 0.0002 1 -2.0 MINOR ENSMUSG00000028688 Toe1 ENSMUST00000154945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028688 Toe1 ENSMUST00000106455 ENSMUSP00000102063 TRANSLATION protein_coding - - 1 329.0 0.0 1.815 0.0 268.6 0.0 -4,-5 0.0215 9 9.204 MINOR ENSMUSG00000028688 Toe1 ENSMUST00000146246 - NO_TRANSLATION retained_intron ENSMUSG00000028688 Toe1 ENSMUST00000145468 ENSMUSP00000117019 TRANSLATION nonsense_mediated_decay start - 3 188.0 0.0 1.215 0.0 212.4 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000028688 Toe1 ENSMUST00000149895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028688 Toe1 ENSMUST00000030451 ENSMUSP00000030451 TRANSLATION protein_coding - CCDS18517.1 1 511.0 0.0 1.815 6.5 315.2 0.0 -4,-5 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000028688 Toe1 ENSMUST00000134612 - NO_TRANSLATION retained_intron ENSMUSG00000028688 Toe1 ENSMUST00000154195 - NO_TRANSLATION retained_intron ENSMUSG00000028738 Tas1r2 ENSMUST00000030510 ENSMUSP00000030510 TRANSLATION protein_coding - CCDS18849.1 1 843.0 0.0 3.933 6.8 475.3 7.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028738 Tas1r2 ENSMUST00000166773 ENSMUSP00000127737 TRANSLATION protein_coding - - 1 814.0 0.0 3.558 0.0 425.8 7.0 3,-2 0.0349 - 8.28 MINOR ENSMUSG00000036622 Atp13a2 ENSMUST00000168047 ENSMUSP00000126461 TRANSLATION protein_coding stop - 1 970.0 3.0 7.20675 0.0 237.4 3.0 -4,-5 0.0253 15 -2.0 MINOR ENSMUSG00000036622 Atp13a2 ENSMUST00000135117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036622 Atp13a2 ENSMUST00000127833 ENSMUSP00000132183 TRANSLATION protein_coding - CCDS51345.1 1 1115.0 3.0 8.85675 0.4 249.3 7.0 -4,-5 0.3269 16 14.604 MINOR ENSMUSG00000036622 Atp13a2 ENSMUST00000137630 - NO_TRANSLATION retained_intron ENSMUSG00000036622 Atp13a2 ENSMUST00000151517 - NO_TRANSLATION retained_intron ENSMUSG00000036622 Atp13a2 ENSMUST00000037055 ENSMUSP00000039648 TRANSLATION protein_coding - CCDS18859.1 1 1169.0 3.0 9.04425 6.9 249.7 9.0 -4,-5 1.0 17 17.0 PRINCIPAL:1 ENSMUSG00000036622 Atp13a2 ENSMUST00000156995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036622 Atp13a2 ENSMUST00000125797 - NO_TRANSLATION retained_intron ENSMUSG00000036622 Atp13a2 ENSMUST00000170797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028243 Ubxn2b ENSMUST00000029907 ENSMUSP00000029907 TRANSLATION protein_coding - CCDS17949.1 1 331.0 0.0 3.8 8.1 160.6 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000028784 Spocd1 ENSMUST00000084263 ENSMUSP00000081284 TRANSLATION protein_coding - - 5 936.0 0.0 3.38 0.0 177.1 0.0 -4,-5 0.8307 - 12.0 PRINCIPAL:1 ENSMUSG00000028784 Spocd1 ENSMUST00000128007 ENSMUSP00000118383 TRANSLATION protein_coding stop - 5 158.0 0.0 1.8 0.0 80.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073724 Pramel4 ENSMUST00000156324 ENSMUSP00000125675 TRANSLATION nonsense_mediated_decay - - 1 99.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0032 - -2.0 MINOR ENSMUSG00000073724 Pramel4 ENSMUST00000133626 ENSMUSP00000119857 TRANSLATION protein_coding - CCDS18900.1 5 500.0 0.0 4.08 0.0 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000073724 Pramel4 ENSMUST00000084191 ENSMUSP00000081207 TRANSLATION protein_coding - - 1 484.0 0.0 4.0 0.0 0.0 0.0 -4,-6 0.0925 - 5.838 ALTERNATIVE:2 ENSMUSG00000073724 Pramel4 ENSMUST00000091676 ENSMUSP00000089265 TRANSLATION protein_coding - CCDS18900.1 1 500.0 0.0 4.08 0.0 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000028519 Dab1 ENSMUST00000149672 ENSMUSP00000118532 TRANSLATION protein_coding start/stop - 3 214.0 6.0 4.25 0.0 38.6 0.0 -4,-5 0.0068 7 -2.0 MINOR ENSMUSG00000028519 Dab1 ENSMUST00000106830 ENSMUSP00000102443 TRANSLATION protein_coding - CCDS18413.1 1 555.0 6.0 4.75 15.1 38.6 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000028519 Dab1 ENSMUST00000106826 ENSMUSP00000102439 TRANSLATION protein_coding - - 1 197.0 6.0 4.75 0.0 38.6 0.0 -4,-5 0.0172 5 18.0 MINOR ENSMUSG00000028519 Dab1 ENSMUST00000141037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028519 Dab1 ENSMUST00000143294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028519 Dab1 ENSMUST00000146078 ENSMUSP00000125033 TRANSLATION nonsense_mediated_decay - - 5 258.0 6.0 4.25 0.0 38.6 0.0 -4,-5 0.0077 5 -2.0 MINOR ENSMUSG00000028519 Dab1 ENSMUST00000106827 ENSMUSP00000102440 TRANSLATION protein_coding - - 1 204.0 6.0 4.75 0.1 38.6 0.0 -4,-5 0.041 5 18.0 MINOR ENSMUSG00000028519 Dab1 ENSMUST00000143644 ENSMUSP00000118650 TRANSLATION protein_coding stop - 5 160.0 6.0 3.5 0.0 33.8 0.0 -4,-5 0.0022 5 -2.0 MINOR ENSMUSG00000081225 Cyp2j12 ENSMUST00000097972 ENSMUSP00000133811 TRANSLATION protein_coding - CCDS57287.1 5 502.0 30.0 9.0 0.0 458.1 1.0 -3,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000081225 Cyp2j12 ENSMUST00000121694 ENSMUSP00000134394 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 1.0 0.0 0.0 1.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000070617 Pramel23 ENSMUST00000073532 ENSMUSP00000073224 TRANSLATION protein_coding - - 1 455.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.659 - 6.0 PRINCIPAL:1 ENSMUSG00000029050 Ski ENSMUST00000129314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029050 Ski ENSMUST00000084103 ENSMUSP00000081120 TRANSLATION protein_coding - - 5 675.0 4.0 1.6 0.0 273.2 0.0 -4,-6 0.0055 8 13.648 MINOR ENSMUSG00000029050 Ski ENSMUST00000030917 ENSMUSP00000030917 TRANSLATION protein_coding - CCDS19024.1 1 727.0 4.0 2.2 5.7 285.1 0.0 -4,-6 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000058186 Zfp980 ENSMUST00000180014 ENSMUSP00000137589 TRANSLATION protein_coding - CCDS51370.1 2 645.0 55.0 1.0 0.0 395.5 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000058186 Zfp980 ENSMUST00000105738 ENSMUSP00000101364 TRANSLATION protein_coding - CCDS51370.1 1 645.0 55.0 1.0 0.0 395.5 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034919 Ttc22 ENSMUST00000047922 ENSMUSP00000035773 TRANSLATION protein_coding - CCDS18422.1 1 568.0 0.0 6.5 3.1 0.0 0.0 -4,-5 1.0 7 7.0 PRINCIPAL:1 ENSMUSG00000034919 Ttc22 ENSMUST00000136505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095218 Or10ak14 ENSMUST00000214922 ENSMUSP00000149448 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 6.7 184.0 7.0 -3,-5 0.7583 - 10.25 ALTERNATIVE:1 ENSMUSG00000095218 Or10ak14 ENSMUST00000084315 ENSMUSP00000092427 TRANSLATION protein_coding - CCDS38856.1 - 313.0 0.0 1.0 8.6 184.0 7.0 -3,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000095218 Or10ak14 ENSMUST00000216559 ENSMUSP00000149843 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 6.7 184.0 7.0 -3,-5 0.7583 - 10.25 ALTERNATIVE:1 ENSMUSG00000096688 Mup17 ENSMUST00000107484 ENSMUSP00000103108 TRANSLATION protein_coding - CCDS51198.1 2 180.0 0.0 4.88 0.0 109.9 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096582 Gm13289 ENSMUST00000179158 ENSMUSP00000135952 TRANSLATION protein_coding - CCDS57284.1 - 182.0 0.0 0.4 0.0 94.6 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028248 Pnisr ENSMUST00000098238 ENSMUSP00000095840 TRANSLATION protein_coding - - 5 805.0 0.0 0.0 2.8 178.1 0.0 -4,-6 0.3287 4 6.606 MINOR ENSMUSG00000028248 Pnisr ENSMUST00000148561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028248 Pnisr ENSMUST00000156136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028248 Pnisr ENSMUST00000185001 ENSMUSP00000139324 TRANSLATION nonsense_mediated_decay - - 5 373.0 0.0 0.0 0.0 144.0 0.0 -4,-6 0.0004 1 -2.0 MINOR ENSMUSG00000028248 Pnisr ENSMUST00000150927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028248 Pnisr ENSMUST00000150368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028248 Pnisr ENSMUST00000138419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028248 Pnisr ENSMUST00000133241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028248 Pnisr ENSMUST00000151621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028248 Pnisr ENSMUST00000108229 ENSMUSP00000103864 TRANSLATION protein_coding - - 1 373.0 0.0 0.0 0.0 144.0 0.0 -4,-6 0.0004 1 3.954 MINOR ENSMUSG00000028248 Pnisr ENSMUST00000138681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028248 Pnisr ENSMUST00000029911 ENSMUSP00000029911 TRANSLATION protein_coding - CCDS51129.1 1 814.0 0.0 0.0 9.9 178.1 0.0 -4,-6 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000028248 Pnisr ENSMUST00000152666 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040720 Virma ENSMUST00000055372 ENSMUSP00000063188 TRANSLATION protein_coding - - 1 1139.0 0.0 0.0 0.0 355.7 0.0 -4,-5 0.1637 12 6.0 MINOR ENSMUSG00000040720 Virma ENSMUST00000108307 ENSMUSP00000103943 TRANSLATION protein_coding - CCDS38693.1 5 1861.0 0.0 0.0 0.0 355.7 0.0 -4,-5 0.3835 19 6.0 MINOR ENSMUSG00000040720 Virma ENSMUST00000059914 ENSMUSP00000058078 TRANSLATION protein_coding - CCDS84705.1 1 1811.0 0.0 0.0 11.0 355.7 0.0 -4,-5 1.0 19 9.0 PRINCIPAL:1 ENSMUSG00000089717 Or13f5 ENSMUST00000219705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089717 Or13f5 ENSMUST00000135738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089717 Or13f5 ENSMUST00000095085 ENSMUSP00000092700 TRANSLATION protein_coding - CCDS18183.1 - 319.0 0.0 1.0 3.0 181.1 0.0 -3,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000094116 Gm11237 ENSMUST00000178319 ENSMUSP00000137528 TRANSLATION protein_coding - - 1 360.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.6926 - 6.0 PRINCIPAL:1 ENSMUSG00000028743 Akr7a5 ENSMUST00000073787 ENSMUSP00000073459 TRANSLATION protein_coding - CCDS18844.1 1 367.0 25.0 7.0 6.6 176.6 0.0 -4,0 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000028743 Akr7a5 ENSMUST00000153645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056529 Ptafr ENSMUST00000070690 ENSMUSP00000070925 TRANSLATION protein_coding - CCDS38899.1 1 341.0 0.0 1.0 10.3 132.3 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000044801 Or13c7d ENSMUST00000053931 ENSMUSP00000060784 TRANSLATION protein_coding - CCDS18112.1 - 319.0 0.0 1.0 12.5 201.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028936 Rpl22 ENSMUST00000142735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028936 Rpl22 ENSMUST00000188151 ENSMUSP00000140276 TRANSLATION protein_coding - CCDS18999.1 1 128.0 0.0 3.0 26.5 180.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000028936 Rpl22 ENSMUST00000139685 ENSMUSP00000118787 TRANSLATION protein_coding - CCDS18999.1 1 128.0 0.0 3.0 26.5 180.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000028936 Rpl22 ENSMUST00000126519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028936 Rpl22 ENSMUST00000127659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028936 Rpl22 ENSMUST00000150485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028936 Rpl22 ENSMUST00000156445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028936 Rpl22 ENSMUST00000103191 ENSMUSP00000099480 TRANSLATION protein_coding - CCDS18999.1 1 128.0 0.0 3.0 26.5 180.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000039693 Msantd3 ENSMUST00000064807 ENSMUSP00000065785 TRANSLATION protein_coding - CCDS18167.1 1 275.0 0.0 0.2 19.8 81.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039693 Msantd3 ENSMUST00000061135 ENSMUSP00000056551 TRANSLATION protein_coding - CCDS18167.1 1 275.0 0.0 0.2 19.8 81.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039693 Msantd3 ENSMUST00000132360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039693 Msantd3 ENSMUST00000146240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039693 Msantd3 ENSMUST00000107704 ENSMUSP00000103332 TRANSLATION protein_coding - CCDS18167.1 1 275.0 0.0 0.2 19.8 81.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028923 Necap2 ENSMUST00000150330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028923 Necap2 ENSMUST00000130351 - NO_TRANSLATION retained_intron ENSMUSG00000028923 Necap2 ENSMUST00000030760 ENSMUSP00000030760 TRANSLATION protein_coding - CCDS18862.1 1 266.0 0.0 4.63 13.4 193.0 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028923 Necap2 ENSMUST00000149178 - NO_TRANSLATION retained_intron ENSMUSG00000028923 Necap2 ENSMUST00000145621 - NO_TRANSLATION retained_intron ENSMUSG00000028923 Necap2 ENSMUST00000132906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028923 Necap2 ENSMUST00000122933 - NO_TRANSLATION retained_intron ENSMUSG00000028923 Necap2 ENSMUST00000153721 ENSMUSP00000121918 TRANSLATION nonsense_mediated_decay start - 5 77.0 0.0 1.88 0.0 81.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028923 Necap2 ENSMUST00000152915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028923 Necap2 ENSMUST00000144813 - NO_TRANSLATION retained_intron ENSMUSG00000028923 Necap2 ENSMUST00000132704 - NO_TRANSLATION retained_intron ENSMUSG00000028778 Hcrtr1 ENSMUST00000120154 ENSMUSP00000113198 TRANSLATION protein_coding - CCDS18707.1 1 416.0 0.0 5.9 5.2 186.2 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028778 Hcrtr1 ENSMUST00000119423 ENSMUSP00000112630 TRANSLATION protein_coding - CCDS18707.1 5 416.0 0.0 5.9 5.2 186.2 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028778 Hcrtr1 ENSMUST00000164887 ENSMUSP00000127290 TRANSLATION protein_coding - CCDS18707.1 5 416.0 0.0 5.9 5.2 186.2 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000028778 Hcrtr1 ENSMUST00000030562 ENSMUSP00000030562 TRANSLATION protein_coding - CCDS18707.1 1 416.0 0.0 5.9 5.2 186.2 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070806 Zmynd12 ENSMUST00000129150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070806 Zmynd12 ENSMUST00000094819 ENSMUSP00000092414 TRANSLATION protein_coding - CCDS18582.1 1 363.0 7.0 0.5 9.9 32.5 0.0 -4,-6 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000070806 Zmynd12 ENSMUST00000134147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050215 Or13e8 ENSMUST00000055545 ENSMUSP00000060748 TRANSLATION protein_coding - CCDS38744.1 1 316.0 0.0 1.0 4.0 171.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040795 Iqcc ENSMUST00000131559 - NO_TRANSLATION retained_intron ENSMUSG00000040795 Iqcc ENSMUST00000121442 ENSMUSP00000113036 TRANSLATION protein_coding - - 2 91.0 0.0 0.0 0.0 21.2 0.0 -4,-2 0.6867 - 2.0 PRINCIPAL:2 ENSMUSG00000040795 Iqcc ENSMUST00000127029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040795 Iqcc ENSMUST00000046675 ENSMUSP00000040584 TRANSLATION protein_coding - CCDS38886.1 2 418.0 0.0 0.0 0.0 21.2 0.0 -4,-2 0.3301 - 2.0 ALTERNATIVE:2 ENSMUSG00000040795 Iqcc ENSMUST00000146378 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002384 Bmp8b ENSMUST00000151850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002384 Bmp8b ENSMUST00000002457 ENSMUSP00000002457 TRANSLATION protein_coding - CCDS18608.1 1 399.0 0.0 3.47 6.6 318.3 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040738 Ints8 ENSMUST00000147372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040738 Ints8 ENSMUST00000136545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040738 Ints8 ENSMUST00000108319 ENSMUSP00000103955 TRANSLATION protein_coding - CCDS17967.1 1 995.0 0.0 19.41 0.0 0.0 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:4 ENSMUSG00000040738 Ints8 ENSMUST00000145252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040738 Ints8 ENSMUST00000133031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040738 Ints8 ENSMUST00000044616 ENSMUSP00000038418 TRANSLATION protein_coding - CCDS17967.1 1 995.0 0.0 19.41 0.0 0.0 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:4 ENSMUSG00000040738 Ints8 ENSMUST00000137054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040738 Ints8 ENSMUST00000108318 ENSMUSP00000103954 TRANSLATION protein_coding - - 5 978.0 0.0 18.91 2.0 0.0 0.0 -4,-5 0.93 12 5.998 ALTERNATIVE:2 ENSMUSG00000040964 Arhgef10l ENSMUST00000105797 ENSMUSP00000101423 TRANSLATION protein_coding - - 5 988.0 0.0 2.867 1.0 42.2 0.0 -4,-1 0.0295 16 3.3 MINOR ENSMUSG00000040964 Arhgef10l ENSMUST00000154979 ENSMUSP00000122667 TRANSLATION protein_coding stop - 3 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040964 Arhgef10l ENSMUST00000105799 ENSMUSP00000101425 TRANSLATION protein_coding - CCDS71507.1 5 1280.0 0.0 4.217 0.0 135.8 0.0 -4,-5 0.4308 18 8.0 MINOR ENSMUSG00000040964 Arhgef10l ENSMUST00000039204 ENSMUSP00000040531 TRANSLATION protein_coding - CCDS51344.1 1 1275.0 0.0 4.217 5.0 135.8 0.0 -4,-5 0.8704 18 9.176 ALTERNATIVE:1 ENSMUSG00000040964 Arhgef10l ENSMUST00000069623 ENSMUSP00000066249 TRANSLATION protein_coding - CCDS51343.1 1 1241.0 0.0 4.217 7.8 135.8 0.0 -4,-5 1.0 18 10.0 PRINCIPAL:4 ENSMUSG00000040964 Arhgef10l ENSMUST00000105798 ENSMUSP00000101424 TRANSLATION protein_coding - - 1 1040.0 0.0 4.217 0.7 135.8 0.0 -4,-7 0.2981 17 8.0 MINOR ENSMUSG00000040964 Arhgef10l ENSMUST00000097820 ENSMUSP00000095431 TRANSLATION protein_coding - CCDS51342.1 1 1236.0 0.0 4.217 6.9 135.8 0.0 -4,-5 0.951 18 9.736 ALTERNATIVE:1 ENSMUSG00000040964 Arhgef10l ENSMUST00000143614 ENSMUSP00000120437 TRANSLATION protein_coding stop - 5 163.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040964 Arhgef10l ENSMUST00000125045 - NO_TRANSLATION retained_intron ENSMUSG00000040964 Arhgef10l ENSMUST00000147426 ENSMUSP00000123642 TRANSLATION protein_coding stop - 3 261.0 0.0 2.795 0.0 120.1 0.0 -4,-1 0.002 4 -2.0 MINOR ENSMUSG00000040964 Arhgef10l ENSMUST00000138493 ENSMUSP00000119471 TRANSLATION nonsense_mediated_decay start - 5 611.0 0.0 2.252 0.0 38.0 0.0 -4,-7 0.0013 11 -2.0 MINOR ENSMUSG00000040964 Arhgef10l ENSMUST00000140403 ENSMUSP00000117038 TRANSLATION nonsense_mediated_decay start - 5 205.0 0.0 0.512 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000038172 Ttc39b ENSMUST00000048274 ENSMUSP00000040590 TRANSLATION protein_coding - - 1 518.0 0.0 8.34 0.0 484.9 0.0 -4,-5 0.0117 11 2.13 MINOR ENSMUSG00000038172 Ttc39b ENSMUST00000143362 - NO_TRANSLATION retained_intron ENSMUSG00000038172 Ttc39b ENSMUST00000148811 ENSMUSP00000124490 TRANSLATION protein_coding - - 3 179.0 0.0 2.16 0.0 89.2 0.0 -4,-7 0.0 3 0.0 MINOR ENSMUSG00000038172 Ttc39b ENSMUST00000030205 ENSMUSP00000030205 TRANSLATION protein_coding - - 1 209.0 0.0 2.16 0.0 89.2 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000038172 Ttc39b ENSMUST00000150522 ENSMUSP00000124955 TRANSLATION protein_coding stop - 3 179.0 0.0 3.51 0.0 165.3 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000038172 Ttc39b ENSMUST00000102823 ENSMUSP00000099887 TRANSLATION protein_coding - CCDS18297.1 1 617.0 0.0 10.92 5.7 563.4 0.0 -4,-5 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000038172 Ttc39b ENSMUST00000146519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028813 CK137956 ENSMUST00000030614 ENSMUSP00000030614 TRANSLATION protein_coding - CCDS51304.1 1 596.0 0.0 0.0 5.6 812.6 0.0 -4,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000060491 4930522H14Rik ENSMUST00000082306 ENSMUSP00000080923 TRANSLATION protein_coding - CCDS57290.1 1 226.0 0.0 1.0 2.3 337.3 1.0 -2,-5 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000060491 4930522H14Rik ENSMUST00000102725 ENSMUSP00000099786 TRANSLATION protein_coding - CCDS18465.1 1 230.0 0.0 1.0 2.1 337.3 1.0 -4,-5 0.8345 - 8.846 ALTERNATIVE:2 ENSMUSG00000028848 Gpn2 ENSMUST00000105899 ENSMUSP00000101519 TRANSLATION protein_coding - CCDS71484.1 5 287.0 14.0 4.0 0.0 225.0 0.0 -4,-6 0.0056 3 13.524 MINOR ENSMUSG00000028848 Gpn2 ENSMUST00000030661 ENSMUSP00000030661 TRANSLATION protein_coding - CCDS18753.1 1 310.0 15.0 4.75 17.4 263.5 0.0 -4,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000028848 Gpn2 ENSMUST00000148909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045854 Lyrm2 ENSMUST00000130321 - NO_TRANSLATION retained_intron ENSMUSG00000045854 Lyrm2 ENSMUST00000135833 - NO_TRANSLATION retained_intron ENSMUSG00000045854 Lyrm2 ENSMUST00000062802 ENSMUSP00000061451 TRANSLATION protein_coding - CCDS38703.1 1 88.0 0.0 2.0 30.5 65.7 0.0 -4,0 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000056300 Zfp981 ENSMUST00000105735 ENSMUSP00000101361 TRANSLATION protein_coding - CCDS57311.1 2 445.0 28.0 2.2 0.0 221.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000056300 Zfp981 ENSMUST00000140089 ENSMUSP00000115886 TRANSLATION protein_coding stop - 2 133.0 0.0 1.08 0.0 69.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056300 Zfp981 ENSMUST00000179175 ENSMUSP00000136739 TRANSLATION protein_coding - CCDS57311.1 2 445.0 28.0 2.2 0.0 221.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000066043 Phactr4 ENSMUST00000136711 ENSMUSP00000122194 TRANSLATION protein_coding stop - 3 157.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000066043 Phactr4 ENSMUST00000084170 ENSMUSP00000081185 TRANSLATION protein_coding - CCDS51318.1 1 667.0 0.0 3.8 0.0 62.8 0.0 -4,-5 0.085 14 5.834 MINOR ENSMUSG00000066043 Phactr4 ENSMUST00000152271 ENSMUSP00000119767 TRANSLATION protein_coding stop - 5 298.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0034 6 -2.0 MINOR ENSMUSG00000066043 Phactr4 ENSMUST00000084249 ENSMUSP00000081270 TRANSLATION protein_coding - - 5 704.0 0.0 4.55 0.1 94.6 0.0 -4,-5 0.1654 14 8.0 ALTERNATIVE:2 ENSMUSG00000066043 Phactr4 ENSMUST00000127516 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066043 Phactr4 ENSMUST00000102568 ENSMUSP00000099628 TRANSLATION protein_coding - CCDS18724.1 1 694.0 0.0 4.55 0.1 94.6 0.0 -4,-5 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000045573 Penk ENSMUST00000070375 ENSMUSP00000066822 TRANSLATION protein_coding - CCDS17946.1 1 268.0 0.0 1.2 11.9 61.0 0.0 4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000045573 Penk ENSMUST00000133567 ENSMUSP00000122389 TRANSLATION protein_coding stop - 3 178.0 0.0 1.2 0.0 61.0 0.0 4,-1 0.0895 5 -2.0 MINOR ENSMUSG00000101163 Gm13278 ENSMUST00000177771 ENSMUSP00000137618 TRANSLATION protein_coding - CCDS38806.1 - 182.0 0.0 0.4 0.0 94.6 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066072 Cyp4a10 ENSMUST00000094886 ENSMUSP00000092486 TRANSLATION protein_coding - - 2 499.0 30.0 10.5 0.8 424.5 1.0 -3,-5 0.1081 1 16.344 MINOR ENSMUSG00000066072 Cyp4a10 ENSMUST00000058785 ENSMUSP00000061126 TRANSLATION protein_coding - CCDS18492.1 1 509.0 30.0 10.83 7.7 441.1 1.0 -3,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000028478 Clta ENSMUST00000107846 ENSMUSP00000103478 TRANSLATION protein_coding - CCDS38748.1 1 218.0 0.0 3.0 16.5 203.0 0.0 -4,-5 0.9703 8 8.002 MINOR ENSMUSG00000028478 Clta ENSMUST00000107845 ENSMUSP00000103477 TRANSLATION protein_coding - CCDS38749.1 2 216.0 0.0 3.0 16.5 203.9 0.0 -4,-5 0.9875 8 8.002 MINOR ENSMUSG00000028478 Clta ENSMUST00000107847 ENSMUSP00000103479 TRANSLATION protein_coding - CCDS71377.1 5 230.0 0.0 3.5 13.1 192.9 0.0 -4,-5 0.9242 8 8.122 MINOR ENSMUSG00000028478 Clta ENSMUST00000170241 ENSMUSP00000127344 TRANSLATION protein_coding - CCDS38748.1 1 218.0 0.0 3.0 16.5 203.0 0.0 -4,-5 0.9703 8 8.002 MINOR ENSMUSG00000028478 Clta ENSMUST00000107849 ENSMUSP00000103481 TRANSLATION protein_coding - CCDS38747.1 1 236.0 0.0 3.5 12.6 195.1 0.0 -4,-5 0.8887 9 7.99 MINOR ENSMUSG00000028478 Clta ENSMUST00000107851 ENSMUSP00000103483 TRANSLATION protein_coding - CCDS38746.1 2 248.0 0.0 4.0 14.6 191.5 0.0 -4,-5 1.0 9 9.508 PRINCIPAL:1 ENSMUSG00000042500 Ago4 ENSMUST00000084289 ENSMUSP00000081312 TRANSLATION protein_coding - CCDS18654.1 1 861.0 5.0 14.716 30.1 797.3 0.0 -4,-2 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000042500 Ago4 ENSMUST00000122951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040536 Necab1 ENSMUST00000141105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040536 Necab1 ENSMUST00000108273 ENSMUSP00000103908 TRANSLATION protein_coding - CCDS17982.1 1 352.0 5.0 0.0 10.7 64.2 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000040536 Necab1 ENSMUST00000041606 ENSMUSP00000038165 TRANSLATION protein_coding - CCDS17982.1 1 352.0 5.0 0.0 10.7 64.2 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000041000 Trim62 ENSMUST00000035667 ENSMUSP00000039121 TRANSLATION protein_coding - CCDS18677.1 1 475.0 16.0 2.35 27.5 181.7 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000041000 Trim62 ENSMUST00000147852 ENSMUSP00000123646 TRANSLATION nonsense_mediated_decay - - 1 145.0 16.0 0.532 0.0 68.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029056 Pank4 ENSMUST00000129386 - NO_TRANSLATION retained_intron ENSMUSG00000029056 Pank4 ENSMUST00000148299 - NO_TRANSLATION retained_intron ENSMUSG00000029056 Pank4 ENSMUST00000070953 ENSMUSP00000064330 TRANSLATION protein_coding - CCDS84834.1 1 820.0 22.0 10.1 0.0 641.7 0.0 -4,-5 0.067 18 16.002 MINOR ENSMUSG00000029056 Pank4 ENSMUST00000030931 ENSMUSP00000030931 TRANSLATION protein_coding - CCDS19019.1 1 773.0 22.0 11.1 6.0 640.0 0.0 -4,-5 1.0 19 19.898 PRINCIPAL:1 ENSMUSG00000029056 Pank4 ENSMUST00000128297 - NO_TRANSLATION retained_intron ENSMUSG00000029056 Pank4 ENSMUST00000148934 ENSMUSP00000125663 TRANSLATION nonsense_mediated_decay start - 1 473.0 19.0 7.25 0.0 433.3 0.0 -4,-5 0.0002 11 -2.0 MINOR ENSMUSG00000029056 Pank4 ENSMUST00000105632 - NO_TRANSLATION retained_intron ENSMUSG00000044254 Pcsk9 ENSMUST00000049507 ENSMUSP00000055757 TRANSLATION protein_coding - CCDS18418.1 1 694.0 3.0 10.8 0.1 79.4 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070577 Gm572 ENSMUST00000105698 ENSMUSP00000101323 TRANSLATION protein_coding - CCDS51378.1 5 399.0 0.0 1.2 0.0 376.2 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028559 Osbpl9 ENSMUST00000159758 - NO_TRANSLATION retained_intron ENSMUSG00000028559 Osbpl9 ENSMUST00000152167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028559 Osbpl9 ENSMUST00000139248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028559 Osbpl9 ENSMUST00000159545 ENSMUSP00000123856 TRANSLATION nonsense_mediated_decay - - 5 67.0 10.0 1.3 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000028559 Osbpl9 ENSMUST00000126288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028559 Osbpl9 ENSMUST00000153714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028559 Osbpl9 ENSMUST00000147457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028559 Osbpl9 ENSMUST00000194478 ENSMUSP00000141991 TRANSLATION protein_coding - CCDS84775.1 5 746.0 10.0 7.099 9.6 320.9 0.0 -4,-6 0.6252 17 15.388 MINOR ENSMUSG00000028559 Osbpl9 ENSMUST00000161602 - NO_TRANSLATION retained_intron ENSMUSG00000028559 Osbpl9 ENSMUST00000084366 ENSMUSP00000081396 TRANSLATION protein_coding - CCDS51258.1 1 639.0 0.0 4.819 11.8 279.4 0.0 -4,-7 0.5108 15 3.18 MINOR ENSMUSG00000028559 Osbpl9 ENSMUST00000160774 ENSMUSP00000124742 TRANSLATION protein_coding - - 5 719.0 8.0 6.799 3.7 270.7 0.0 -4,-6 0.1728 17 10.504 MINOR ENSMUSG00000028559 Osbpl9 ENSMUST00000160895 - NO_TRANSLATION retained_intron ENSMUSG00000028559 Osbpl9 ENSMUST00000162787 ENSMUSP00000124370 TRANSLATION protein_coding - CCDS38835.2 1 723.0 10.0 7.099 25.8 320.9 0.0 -4,-6 1.0 17 18.0 PRINCIPAL:4 ENSMUSG00000028559 Osbpl9 ENSMUST00000159198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028559 Osbpl9 ENSMUST00000161363 ENSMUSP00000125714 TRANSLATION protein_coding - - 5 656.0 0.0 5.319 0.0 279.4 0.0 -2,-5 0.0041 17 2.442 MINOR ENSMUSG00000028559 Osbpl9 ENSMUST00000139412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028559 Osbpl9 ENSMUST00000155434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028559 Osbpl9 ENSMUST00000030288 ENSMUSP00000030288 TRANSLATION protein_coding - - 1 736.0 10.0 7.099 24.8 320.9 0.0 -4,-6 0.8405 17 17.84 ALTERNATIVE:1 ENSMUSG00000028559 Osbpl9 ENSMUST00000160271 ENSMUSP00000124112 TRANSLATION protein_coding - CCDS51257.1 1 626.0 0.0 4.819 7.3 279.4 0.0 -4,-6 0.2868 15 2.456 MINOR ENSMUSG00000058523 Mup5 ENSMUST00000082287 ENSMUSP00000080908 TRANSLATION protein_coding - CCDS18232.1 1 180.0 0.0 4.68 0.0 122.1 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000045004 Spata21 ENSMUST00000051907 ENSMUSP00000053080 TRANSLATION protein_coding - CCDS18863.1 1 681.0 5.0 1.13 0.0 0.0 0.0 -4,-5 1.0 - 11.0 PRINCIPAL:1 ENSMUSG00000045004 Spata21 ENSMUST00000181353 - NO_TRANSLATION retained_intron ENSMUSG00000050105 Fam110d ENSMUST00000138366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050105 Fam110d ENSMUST00000060050 ENSMUSP00000060143 TRANSLATION protein_coding - CCDS38913.1 1 271.0 0.0 0.0 6.5 149.1 0.0 -4,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000029076 Sdf4 ENSMUST00000050078 ENSMUSP00000053175 TRANSLATION protein_coding - CCDS19054.1 1 361.0 13.0 2.1 2.3 47.0 0.0 0,-3 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000029076 Sdf4 ENSMUST00000124872 - NO_TRANSLATION retained_intron ENSMUSG00000029076 Sdf4 ENSMUST00000105578 ENSMUSP00000101203 TRANSLATION protein_coding - CCDS19054.1 1 361.0 13.0 2.1 2.3 47.0 0.0 0,-3 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000029076 Sdf4 ENSMUST00000097734 ENSMUSP00000095340 TRANSLATION protein_coding - CCDS80198.1 1 218.0 5.0 0.5 0.0 32.1 0.0 0,-3 0.0238 10 6.192 MINOR ENSMUSG00000029076 Sdf4 ENSMUST00000105579 ENSMUSP00000101204 TRANSLATION protein_coding - CCDS19054.1 1 361.0 13.0 2.1 2.3 47.0 0.0 0,-3 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000029076 Sdf4 ENSMUST00000149971 - NO_TRANSLATION retained_intron ENSMUSG00000078721 Spata31f1a ENSMUST00000107979 ENSMUSP00000103613 TRANSLATION protein_coding - CCDS71367.1 3 1314.0 0.0 0.0 0.0 151.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028804 Csmd2 ENSMUST00000221199 ENSMUSP00000152795 TRANSLATION protein_coding start - 5 302.0 0.0 0.84 0.0 39.7 0.0 -4,-5 0.001 6 -2.0 MINOR ENSMUSG00000028804 Csmd2 ENSMUST00000148247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028804 Csmd2 ENSMUST00000184063 ENSMUSP00000138958 TRANSLATION protein_coding - CCDS84795.1 5 3611.0 35.0 31.3765 5.5 1972.4 0.0 -4,-7 1.0 46 20.0 PRINCIPAL:1 ENSMUSG00000028804 Csmd2 ENSMUST00000139561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028804 Csmd2 ENSMUST00000144298 - NO_TRANSLATION retained_intron ENSMUSG00000028804 Csmd2 ENSMUST00000129619 - NO_TRANSLATION retained_intron ENSMUSG00000052914 Cyp2j6 ENSMUST00000030303 ENSMUSP00000030303 TRANSLATION protein_coding - CCDS18369.1 1 501.0 30.0 9.0 6.6 456.1 0.0 1,-3 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000111159 Or10ak13 ENSMUST00000077247 ENSMUSP00000076483 TRANSLATION protein_coding - CCDS18561.1 - 315.0 0.0 1.0 6.7 176.2 0.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000034610 Tut4 ENSMUST00000155068 ENSMUSP00000120172 TRANSLATION protein_coding start - 1 1006.0 22.0 10.075 0.0 65.1 0.0 -4,-5 0.0114 15 -2.0 MINOR ENSMUSG00000034610 Tut4 ENSMUST00000127602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034610 Tut4 ENSMUST00000138088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034610 Tut4 ENSMUST00000138809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034610 Tut4 ENSMUST00000151349 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034610 Tut4 ENSMUST00000106673 ENSMUSP00000102284 TRANSLATION protein_coding stop - 3 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034610 Tut4 ENSMUST00000153916 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034610 Tut4 ENSMUST00000145590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034610 Tut4 ENSMUST00000097925 ENSMUSP00000095538 TRANSLATION protein_coding - - 5 1648.0 31.0 17.825 0.4 172.6 0.0 -4,-5 1.0 22 14.0 PRINCIPAL:4 ENSMUSG00000034610 Tut4 ENSMUST00000043368 ENSMUSP00000044836 TRANSLATION protein_coding - CCDS18451.1 5 1644.0 31.0 17.825 0.4 172.6 0.0 -4,-5 0.9259 22 14.0 ALTERNATIVE:2 ENSMUSG00000034610 Tut4 ENSMUST00000128042 ENSMUSP00000116253 TRANSLATION protein_coding start - 2 105.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000010517 Faf1 ENSMUST00000155204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010517 Faf1 ENSMUST00000143217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010517 Faf1 ENSMUST00000102724 ENSMUSP00000099785 TRANSLATION protein_coding - CCDS18468.1 1 649.0 0.0 11.525 21.3 109.5 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000060206 Zfp462 ENSMUST00000098070 ENSMUSP00000095677 TRANSLATION protein_coding - CCDS38764.1 5 2495.0 101.0 4.12 1.1 66.5 0.0 -4,-5 1.0 5 18.358 PRINCIPAL:1 ENSMUSG00000060206 Zfp462 ENSMUST00000079605 ENSMUSP00000078555 TRANSLATION protein_coding - - 5 1408.0 82.0 4.32 0.0 66.5 0.0 -4,-5 0.3464 - 11.76 MINOR ENSMUSG00000060206 Zfp462 ENSMUST00000030131 ENSMUSP00000030131 TRANSLATION protein_coding - - 5 1407.0 82.0 4.44 0.0 66.5 0.0 -4,-5 0.3988 - 12.0 MINOR ENSMUSG00000060206 Zfp462 ENSMUST00000133895 ENSMUSP00000122775 TRANSLATION protein_coding stop - 5 93.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028426 Rad23b ENSMUST00000030134 ENSMUSP00000030134 TRANSLATION protein_coding - CCDS18194.1 1 416.0 0.0 6.35 8.0 254.7 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000028426 Rad23b ENSMUST00000156263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028426 Rad23b ENSMUST00000127266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028426 Rad23b ENSMUST00000148719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089773 Skint1 ENSMUST00000162158 ENSMUSP00000124737 TRANSLATION protein_coding - CCDS51267.1 1 364.0 0.0 3.23 0.3 52.0 3.0 0,-3 0.4313 - 7.868 ALTERNATIVE:2 ENSMUSG00000089773 Skint1 ENSMUST00000161389 ENSMUSP00000125313 TRANSLATION protein_coding - - 1 289.0 0.0 3.296 0.0 52.0 1.0 0,-3 0.7858 - 8.0 PRINCIPAL:2 ENSMUSG00000089773 Skint1 ENSMUST00000143802 - NO_TRANSLATION retained_intron ENSMUSG00000089773 Skint1 ENSMUST00000117379 ENSMUSP00000124545 TRANSLATION protein_coding - - 1 255.0 0.0 2.216 0.0 52.0 0.0 0,-3 0.0414 - 5.84 MINOR ENSMUSG00000089773 Skint1 ENSMUST00000162885 ENSMUSP00000125625 TRANSLATION protein_coding - - 1 163.0 0.0 1.45 0.0 52.0 0.0 0,-3 0.033 - 4.31 MINOR ENSMUSG00000061298 Agbl4 ENSMUST00000106592 ENSMUSP00000102202 TRANSLATION protein_coding - CCDS71443.1 1 494.0 7.0 11.43 5.7 91.8 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000061298 Agbl4 ENSMUST00000106587 ENSMUSP00000102197 TRANSLATION protein_coding - - 1 164.0 0.0 2.1 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000061298 Agbl4 ENSMUST00000148038 ENSMUSP00000118551 TRANSLATION protein_coding start - 5 277.0 7.0 6.5 0.0 91.8 0.0 -4,-5 0.0062 5 -2.0 MINOR ENSMUSG00000061298 Agbl4 ENSMUST00000136433 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061298 Agbl4 ENSMUST00000106591 ENSMUSP00000102201 TRANSLATION protein_coding - - 1 346.0 5.0 8.43 0.0 85.7 0.0 -4,-5 0.0066 8 9.888 MINOR ENSMUSG00000061298 Agbl4 ENSMUST00000106589 ENSMUSP00000102199 TRANSLATION protein_coding stop - 5 63.0 0.0 1.43 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000061298 Agbl4 ENSMUST00000097920 ENSMUSP00000095533 TRANSLATION protein_coding - CCDS51264.1 1 540.0 7.0 11.43 0.0 91.8 0.0 -4,-5 0.075 10 18.0 MINOR ENSMUSG00000061298 Agbl4 ENSMUST00000154123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061298 Agbl4 ENSMUST00000142460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061298 Agbl4 ENSMUST00000080744 ENSMUSP00000079568 TRANSLATION protein_coding - CCDS51263.1 1 463.0 7.0 11.43 0.0 91.8 0.0 -4,-5 0.0723 10 18.0 MINOR ENSMUSG00000029026 Trp73 ENSMUST00000097762 ENSMUSP00000095368 TRANSLATION protein_coding - CCDS51396.1 1 494.0 4.0 7.75 1.0 465.9 0.0 -4,-7 0.1 1 12.814 MINOR ENSMUSG00000029026 Trp73 ENSMUST00000097763 ENSMUSP00000134196 TRANSLATION nonsense_mediated_decay - - 5 367.0 4.0 6.55 0.0 438.8 0.0 -4,-7 0.0136 - -2.0 MINOR ENSMUSG00000029026 Trp73 ENSMUST00000155642 ENSMUSP00000135281 TRANSLATION protein_coding stop - 3 213.0 4.0 4.55 0.0 317.8 0.0 -4,-6 0.0008 - -2.0 MINOR ENSMUSG00000029026 Trp73 ENSMUST00000105643 ENSMUSP00000101268 TRANSLATION protein_coding - - 5 452.0 4.0 7.05 1.0 438.8 0.0 -4,-7 0.0249 - 9.79 MINOR ENSMUSG00000029026 Trp73 ENSMUST00000105644 ENSMUSP00000101269 TRANSLATION protein_coding - - 1 631.0 4.0 9.15 0.7 472.3 0.0 -4,-5 0.1759 1 16.0 MINOR ENSMUSG00000029026 Trp73 ENSMUST00000239448 ENSMUSP00000159346 TRANSLATION protein_coding - CCDS19009.2 - 638.0 4.0 9.15 0.4 472.3 0.0 -4,-5 0.2109 1 16.0 MINOR ENSMUSG00000029026 Trp73 ENSMUST00000133533 ENSMUSP00000114418 TRANSLATION protein_coding - CCDS51397.1 1 590.0 4.0 8.25 12.0 472.3 0.0 -4,-7 1.0 1 17.2 PRINCIPAL:1 ENSMUSG00000029026 Trp73 ENSMUST00000139634 ENSMUSP00000114736 TRANSLATION protein_coding stop - 3 204.0 0.0 2.45 0.0 82.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028901 Gmeb1 ENSMUST00000168553 ENSMUSP00000131331 TRANSLATION protein_coding - CCDS18720.1 5 562.0 4.0 2.8 20.5 81.1 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000028901 Gmeb1 ENSMUST00000125534 - NO_TRANSLATION retained_intron ENSMUSG00000028901 Gmeb1 ENSMUST00000131763 - NO_TRANSLATION retained_intron ENSMUSG00000028901 Gmeb1 ENSMUST00000105965 ENSMUSP00000101585 TRANSLATION protein_coding - CCDS18720.1 1 562.0 4.0 2.8 20.5 81.1 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000028901 Gmeb1 ENSMUST00000105964 ENSMUSP00000101584 TRANSLATION protein_coding - CCDS18720.1 1 562.0 4.0 2.8 20.5 81.1 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000028901 Gmeb1 ENSMUST00000030733 ENSMUSP00000030733 TRANSLATION protein_coding - CCDS18720.1 1 562.0 4.0 2.8 20.5 81.1 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000028901 Gmeb1 ENSMUST00000126542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042788 Fam166b ENSMUST00000052829 ENSMUSP00000058980 TRANSLATION protein_coding - CCDS51162.1 1 379.0 0.0 0.0 0.0 38.1 0.0 -4,-5 0.0404 2 3.726 MINOR ENSMUSG00000042788 Fam166b ENSMUST00000155080 ENSMUSP00000133752 TRANSLATION protein_coding start - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042788 Fam166b ENSMUST00000107929 ENSMUSP00000103562 TRANSLATION protein_coding - - 5 273.0 0.0 0.0 5.0 61.4 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000042788 Fam166b ENSMUST00000107928 ENSMUSP00000103561 TRANSLATION protein_coding - - 5 253.0 0.0 0.0 0.0 61.4 0.0 -4,-5 0.0388 3 6.0 MINOR ENSMUSG00000042788 Fam166b ENSMUST00000171134 ENSMUSP00000127145 TRANSLATION protein_coding - CCDS51163.1 1 245.0 0.0 0.0 0.0 38.1 0.0 -4,-5 0.0404 3 3.726 MINOR ENSMUSG00000042788 Fam166b ENSMUST00000149676 ENSMUSP00000134319 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00002076083 Klhl17 ENSMUST00020183559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00002076083 Klhl17 ENSMUST00020183430 - NO_TRANSLATION retained_intron ENSMUSG00002076083 Klhl17 ENSMUST00020183325 ENSMUSP00001091658 TRANSLATION nonsense_mediated_decay - - - 222.0 0.0 3.198 0.0 113.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00002076083 Klhl17 ENSMUST00000105569 ENSMUSP00000101194 TRANSLATION protein_coding - CCDS38999.1 1 640.0 0.0 12.08 6.1 504.0 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00002076083 Klhl17 ENSMUST00020182026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00002076083 Klhl17 ENSMUST00020182958 - NO_TRANSLATION retained_intron ENSMUSG00002076083 Klhl17 ENSMUST00020183129 ENSMUSP00001091659 TRANSLATION protein_coding start - - 131.0 0.0 3.25 0.0 144.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00002076083 Klhl17 ENSMUST00020183764 - NO_TRANSLATION retained_intron ENSMUSG00000050212 Eva1b ENSMUST00000052876 ENSMUSP00000054141 TRANSLATION protein_coding - CCDS18643.1 1 164.0 0.0 0.65 11.1 187.1 1.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000050212 Eva1b ENSMUST00000106150 ENSMUSP00000101756 TRANSLATION protein_coding - CCDS18643.1 1 164.0 0.0 0.65 11.1 187.1 1.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000050212 Eva1b ENSMUST00000106152 ENSMUSP00000101758 TRANSLATION protein_coding - CCDS18643.1 1 164.0 0.0 0.65 11.1 187.1 1.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000028435 Aqp3 ENSMUST00000154722 - NO_TRANSLATION retained_intron ENSMUSG00000028435 Aqp3 ENSMUST00000055327 ENSMUSP00000055110 TRANSLATION protein_coding - CCDS38714.1 1 292.0 0.0 6.0 20.6 176.0 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028351 Brinp1 ENSMUST00000156773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028351 Brinp1 ENSMUST00000140572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028351 Brinp1 ENSMUST00000030036 ENSMUSP00000030036 TRANSLATION protein_coding - CCDS18272.1 1 760.0 0.0 0.0 35.4 27.2 0.0 -1,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000050395 Tnfsf15 ENSMUST00000062246 ENSMUSP00000050144 TRANSLATION protein_coding - - 1 252.0 0.0 1.375 2.5 137.1 1.0 -4,-6 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000050395 Tnfsf15 ENSMUST00000239480 ENSMUSP00000159365 TRANSLATION protein_coding - CCDS18263.2 - 270.0 0.0 1.375 0.7 137.1 1.0 -4,-7 0.506 - 6.0 ALTERNATIVE:2 ENSMUSG00000028602 Tnfrsf8 ENSMUST00000123027 ENSMUSP00000118714 TRANSLATION nonsense_mediated_decay - - 1 322.0 0.0 0.0 0.0 25.4 0.0 4,-1 0.1395 2 -2.0 MINOR ENSMUSG00000028602 Tnfrsf8 ENSMUST00000030339 ENSMUSP00000030339 TRANSLATION protein_coding - CCDS18915.1 1 498.0 0.0 0.0 0.1 25.4 0.0 4,-1 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000040025 Ythdf2 ENSMUST00000165072 ENSMUSP00000129225 TRANSLATION protein_coding start - 3 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040025 Ythdf2 ENSMUST00000152796 ENSMUSP00000120414 TRANSLATION protein_coding - CCDS18719.1 1 579.0 0.0 1.13 15.5 144.0 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000040025 Ythdf2 ENSMUST00000102570 - NO_TRANSLATION retained_intron ENSMUSG00000040025 Ythdf2 ENSMUST00000085181 ENSMUSP00000082275 TRANSLATION protein_coding - - 2 51.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - 1.752 MINOR ENSMUSG00000029036 Atad3a ENSMUST00000184131 ENSMUSP00000138809 TRANSLATION nonsense_mediated_decay start - 5 83.0 0.0 1.33 0.0 68.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029036 Atad3a ENSMUST00000176043 ENSMUSP00000135405 TRANSLATION nonsense_mediated_decay - - 5 211.0 0.0 3.1 0.0 178.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000029036 Atad3a ENSMUST00000126725 - NO_TRANSLATION retained_intron ENSMUSG00000029036 Atad3a ENSMUST00000176839 - NO_TRANSLATION retained_intron ENSMUSG00000029036 Atad3a ENSMUST00000184913 ENSMUSP00000138808 TRANSLATION nonsense_mediated_decay start - 3 127.0 0.0 2.35 0.0 147.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029036 Atad3a ENSMUST00000030903 ENSMUSP00000030903 TRANSLATION protein_coding - CCDS19037.1 1 591.0 13.0 7.605 2.2 438.4 0.0 -4,-5 1.0 20 19.0 PRINCIPAL:1 ENSMUSG00000029036 Atad3a ENSMUST00000175679 ENSMUSP00000135297 TRANSLATION nonsense_mediated_decay start - 5 218.0 3.0 2.83 0.0 240.8 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000029036 Atad3a ENSMUST00000177066 - NO_TRANSLATION retained_intron ENSMUSG00000029036 Atad3a ENSMUST00000134317 - NO_TRANSLATION retained_intron ENSMUSG00000028952 Zbtb48 ENSMUST00000136212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028952 Zbtb48 ENSMUST00000147895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028952 Zbtb48 ENSMUST00000156748 ENSMUSP00000117079 TRANSLATION nonsense_mediated_decay start - 3 164.0 8.0 1.8475 0.0 18.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028952 Zbtb48 ENSMUST00000131935 ENSMUSP00000116423 TRANSLATION protein_coding stop - 3 193.0 0.0 1.0 0.0 80.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028952 Zbtb48 ENSMUST00000155389 ENSMUSP00000114726 TRANSLATION nonsense_mediated_decay - - 2 547.0 16.0 4.8125 0.0 133.8 0.0 -4,-5 0.0004 3 -2.0 MINOR ENSMUSG00000028952 Zbtb48 ENSMUST00000066715 ENSMUSP00000067521 TRANSLATION protein_coding - CCDS38982.1 1 681.0 44.0 8.5425 6.6 224.3 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000028952 Zbtb48 ENSMUST00000155441 - NO_TRANSLATION retained_intron ENSMUSG00000028952 Zbtb48 ENSMUST00000123696 - NO_TRANSLATION retained_intron ENSMUSG00000028982 Slc25a33 ENSMUST00000105686 ENSMUSP00000101311 TRANSLATION protein_coding - CCDS38976.1 1 320.0 0.0 2.91 13.9 212.4 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000040715 Rsc1a1 ENSMUST00000105782 ENSMUSP00000101408 TRANSLATION protein_coding - CCDS18879.1 - 582.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8982 - 0.0 PRINCIPAL:1 ENSMUSG00000078593 P3r3urf ENSMUST00000106492 ENSMUSP00000102101 TRANSLATION protein_coding - CCDS51276.1 1 90.0 0.0 0.0 5.3 0.0 0.0 -4,-2 0.9724 - 2.0 PRINCIPAL:1 ENSMUSG00000078688 Mup2 ENSMUST00000107490 ENSMUSP00000126948 TRANSLATION protein_coding - CCDS18230.1 2 180.0 0.0 4.88 0.0 110.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078688 Mup2 ENSMUST00000074700 ENSMUSP00000074264 TRANSLATION protein_coding - CCDS18230.1 1 180.0 0.0 4.88 0.0 110.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078688 Mup2 ENSMUST00000148940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039713 Plekhg5 ENSMUST00000105661 ENSMUSP00000101286 TRANSLATION protein_coding - CCDS18987.2 1 1073.0 0.0 4.08 0.0 118.6 0.0 -4,-1 1.0 15 8.0 PRINCIPAL:2 ENSMUSG00000039713 Plekhg5 ENSMUST00000239128 - NO_TRANSLATION retained_intron ENSMUSG00000039713 Plekhg5 ENSMUST00000142412 - NO_TRANSLATION retained_intron ENSMUSG00000039713 Plekhg5 ENSMUST00000118648 ENSMUSP00000112707 TRANSLATION protein_coding - - 5 1060.0 0.0 4.08 0.1 118.6 0.0 -4,-5 0.2917 15 8.0 ALTERNATIVE:2 ENSMUSG00000039713 Plekhg5 ENSMUST00000084115 ENSMUSP00000081132 TRANSLATION protein_coding - - 2 1071.0 0.0 4.08 0.0 118.6 0.0 -4,-1 0.551 15 8.0 ALTERNATIVE:2 ENSMUSG00000039713 Plekhg5 ENSMUST00000123615 - NO_TRANSLATION retained_intron ENSMUSG00000039713 Plekhg5 ENSMUST00000140085 - NO_TRANSLATION retained_intron ENSMUSG00000039713 Plekhg5 ENSMUST00000105662 ENSMUSP00000101287 TRANSLATION protein_coding - - 5 1041.0 0.0 4.08 0.1 118.6 0.0 -4,-6 0.2515 15 8.0 ALTERNATIVE:2 ENSMUSG00000039713 Plekhg5 ENSMUST00000239025 ENSMUSP00000158992 TRANSLATION protein_coding - - - 1103.0 0.0 4.08 0.1 118.6 0.0 -4,-5 0.2751 15 8.0 ALTERNATIVE:2 ENSMUSG00000036062 Phf24 ENSMUST00000124380 ENSMUSP00000138593 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000036062 Phf24 ENSMUST00000139100 ENSMUSP00000138130 TRANSLATION protein_coding stop - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000036062 Phf24 ENSMUST00000138425 ENSMUSP00000115816 TRANSLATION protein_coding start/stop - 3 256.0 6.0 2.1 0.0 74.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000036062 Phf24 ENSMUST00000151824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036062 Phf24 ENSMUST00000107975 ENSMUSP00000103609 TRANSLATION protein_coding - CCDS84719.1 2 400.0 8.0 2.6 15.6 128.5 0.0 -4,-7 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000036062 Phf24 ENSMUST00000069184 ENSMUSP00000071011 TRANSLATION protein_coding - CCDS18083.1 1 363.0 8.0 2.6 0.4 128.5 0.0 -4,-5 0.1818 9 18.0 MINOR ENSMUSG00000036062 Phf24 ENSMUST00000132173 ENSMUSP00000138443 TRANSLATION protein_coding stop - 2 70.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000036062 Phf24 ENSMUST00000131234 ENSMUSP00000138332 TRANSLATION protein_coding start - 5 127.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000036062 Phf24 ENSMUST00000107976 ENSMUSP00000103610 TRANSLATION protein_coding - CCDS18083.1 1 363.0 8.0 2.6 0.4 128.5 0.0 -4,-5 0.1818 9 18.0 MINOR ENSMUSG00000054405 Dnajc8 ENSMUST00000139074 ENSMUSP00000122099 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.53 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054405 Dnajc8 ENSMUST00000150207 ENSMUSP00000121009 TRANSLATION protein_coding start - 5 244.0 0.0 5.08 0.0 60.9 0.0 -4,-5 0.0178 6 -2.0 MINOR ENSMUSG00000054405 Dnajc8 ENSMUST00000067467 ENSMUSP00000068069 TRANSLATION nonsense_mediated_decay - - 3 85.0 0.0 2.03 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054405 Dnajc8 ENSMUST00000105937 - NO_TRANSLATION retained_intron ENSMUSG00000054405 Dnajc8 ENSMUST00000138334 ENSMUSP00000130135 TRANSLATION nonsense_mediated_decay start - 5 84.0 0.0 2.58 0.0 45.7 0.0 -4,-5 0.0006 2 -2.0 MINOR ENSMUSG00000054405 Dnajc8 ENSMUST00000144073 ENSMUSP00000131575 TRANSLATION nonsense_mediated_decay - - 2 61.0 0.0 1.53 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054405 Dnajc8 ENSMUST00000105940 ENSMUSP00000101560 TRANSLATION protein_coding - - 5 234.0 0.0 6.86 1.1 31.0 0.0 -4,-5 0.0096 5 8.068 MINOR ENSMUSG00000054405 Dnajc8 ENSMUST00000142281 - NO_TRANSLATION retained_intron ENSMUSG00000054405 Dnajc8 ENSMUST00000105938 - NO_TRANSLATION retained_intron ENSMUSG00000054405 Dnajc8 ENSMUST00000094657 ENSMUSP00000092242 TRANSLATION protein_coding - CCDS51319.1 1 253.0 0.0 7.36 26.7 60.9 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000054405 Dnajc8 ENSMUST00000105939 ENSMUSP00000101559 TRANSLATION protein_coding - - 5 219.0 0.0 6.36 0.0 58.9 0.0 -4,-5 0.0053 7 9.804 MINOR ENSMUSG00000054405 Dnajc8 ENSMUST00000156385 ENSMUSP00000125885 TRANSLATION protein_coding start - 3 95.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000073792 Alg6 ENSMUST00000137473 - NO_TRANSLATION retained_intron ENSMUSG00000073792 Alg6 ENSMUST00000107004 ENSMUSP00000102617 TRANSLATION protein_coding stop - 3 204.0 2.0 5.5 0.0 185.9 6.0 3,-2 0.0053 2 -2.0 MINOR ENSMUSG00000073792 Alg6 ENSMUST00000144805 - NO_TRANSLATION retained_intron ENSMUSG00000073792 Alg6 ENSMUST00000141870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073792 Alg6 ENSMUST00000139799 ENSMUSP00000121980 TRANSLATION protein_coding stop - 3 158.0 2.0 4.5 0.0 91.5 4.0 3,-2 0.0045 1 -2.0 MINOR ENSMUSG00000073792 Alg6 ENSMUST00000097961 ENSMUSP00000095574 TRANSLATION protein_coding - CCDS38818.1 1 507.0 2.0 12.75 15.0 474.0 11.0 3,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000073792 Alg6 ENSMUST00000124147 - NO_TRANSLATION retained_intron ENSMUSG00000051351 Zfp46 ENSMUST00000069195 ENSMUSP00000070216 TRANSLATION protein_coding - CCDS18804.1 1 452.0 48.0 3.55 9.2 381.7 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000051351 Zfp46 ENSMUST00000132649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051351 Zfp46 ENSMUST00000144217 ENSMUSP00000118495 TRANSLATION protein_coding stop - 2 157.0 6.0 2.55 0.0 93.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051351 Zfp46 ENSMUST00000130223 ENSMUSP00000115774 TRANSLATION protein_coding stop - 3 76.0 0.0 1.2 0.0 68.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051351 Zfp46 ENSMUST00000130658 ENSMUSP00000116237 TRANSLATION protein_coding stop - 2 130.0 2.0 1.7 0.0 68.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028413 B4galt1 ENSMUST00000030121 ENSMUSP00000030121 TRANSLATION protein_coding - CCDS18051.1 1 399.0 10.0 5.0 8.5 303.8 1.0 -4,-1 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000028413 B4galt1 ENSMUST00000108096 ENSMUSP00000103731 TRANSLATION protein_coding - - 1 346.0 4.0 3.0 0.0 281.4 1.0 -4,-1 0.0032 5 8.652 MINOR ENSMUSG00000050796 B3galt6 ENSMUST00000052185 ENSMUSP00000057521 TRANSLATION protein_coding - CCDS19053.1 - 325.0 0.0 1.0 3.3 96.2 0.0 -2,-6 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000041241 Mul1 ENSMUST00000105813 ENSMUSP00000101439 TRANSLATION protein_coding - - 5 347.0 8.0 3.0 0.0 118.2 1.0 -4,-7 0.0785 8 16.002 MINOR ENSMUSG00000041241 Mul1 ENSMUST00000105815 ENSMUSP00000101441 TRANSLATION protein_coding - - 3 123.0 0.0 3.0 0.0 0.0 1.0 -4,-7 0.0015 3 4.002 MINOR ENSMUSG00000041241 Mul1 ENSMUST00000044058 ENSMUSP00000039604 TRANSLATION protein_coding - CCDS18828.1 1 352.0 8.0 4.0 20.8 118.2 2.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000028259 Fhl5 ENSMUST00000029922 ENSMUSP00000029922 TRANSLATION protein_coding - CCDS18009.1 1 284.0 34.0 5.0 13.1 166.0 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000028259 Fhl5 ENSMUST00000108204 ENSMUSP00000103839 TRANSLATION protein_coding - CCDS18009.1 5 284.0 34.0 5.0 13.1 166.0 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000001089 Luzp1 ENSMUST00000142248 - NO_TRANSLATION retained_intron ENSMUSG00000001089 Luzp1 ENSMUST00000001116 ENSMUSP00000001116 TRANSLATION protein_coding - CCDS38923.1 1 1068.0 0.0 0.0 5.1 0.0 0.0 -4,-7 1.0 31 2.0 PRINCIPAL:1 ENSMUSG00000001089 Luzp1 ENSMUST00000105849 ENSMUSP00000101475 TRANSLATION protein_coding - CCDS38923.1 5 1068.0 0.0 0.0 5.1 0.0 0.0 -4,-7 1.0 31 2.0 PRINCIPAL:1 ENSMUSG00000001089 Luzp1 ENSMUST00000168936 ENSMUSP00000132089 TRANSLATION protein_coding start - 2 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0176 1 -2.0 MINOR ENSMUSG00000001089 Luzp1 ENSMUST00000063021 ENSMUSP00000060619 TRANSLATION protein_coding - CCDS38923.1 1 1068.0 0.0 0.0 5.1 0.0 0.0 -4,-7 1.0 31 2.0 PRINCIPAL:1 ENSMUSG00000001089 Luzp1 ENSMUST00000170102 ENSMUSP00000130758 TRANSLATION protein_coding - CCDS38923.1 5 1068.0 0.0 0.0 5.1 0.0 0.0 -4,-7 1.0 31 2.0 PRINCIPAL:1 ENSMUSG00000001089 Luzp1 ENSMUST00000129230 ENSMUSP00000128591 TRANSLATION protein_coding stop - 5 66.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0209 1 -2.0 MINOR ENSMUSG00000038578 Susd1 ENSMUST00000107544 ENSMUSP00000103168 TRANSLATION protein_coding - - 5 699.0 13.0 2.83 0.0 127.7 1.0 -4,-5 0.03 2 16.938 MINOR ENSMUSG00000038578 Susd1 ENSMUST00000136562 - NO_TRANSLATION retained_intron ENSMUSG00000038578 Susd1 ENSMUST00000136077 - NO_TRANSLATION retained_intron ENSMUSG00000038578 Susd1 ENSMUST00000136942 - NO_TRANSLATION retained_intron ENSMUSG00000038578 Susd1 ENSMUST00000040166 ENSMUSP00000048201 TRANSLATION protein_coding - CCDS51184.1 1 752.0 13.0 3.31 1.4 129.4 1.0 3,-1 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000028790 Khdrbs1 ENSMUST00000139281 - NO_TRANSLATION retained_intron ENSMUSG00000028790 Khdrbs1 ENSMUST00000066257 ENSMUSP00000066516 TRANSLATION protein_coding - CCDS18703.1 1 443.0 0.0 3.2 9.6 206.1 0.0 -4,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000028790 Khdrbs1 ENSMUST00000129342 ENSMUSP00000115402 TRANSLATION nonsense_mediated_decay - CCDS18703.1 1 443.0 0.0 3.2 9.6 206.1 0.0 -4,-2 1.0 4 -2.0 MINOR ENSMUSG00000028790 Khdrbs1 ENSMUST00000139936 - NO_TRANSLATION retained_intron ENSMUSG00000083138 Cyp4a29 ENSMUST00000118278 ENSMUSP00000139717 TRANSLATION protein_coding - CCDS80146.1 5 509.0 30.0 11.0 7.7 421.5 0.0 -2,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000028785 Hpca ENSMUST00000125931 ENSMUSP00000115031 TRANSLATION protein_coding stop - 3 187.0 22.0 3.75 0.0 92.2 0.0 -4,-5 0.0431 6 -2.0 MINOR ENSMUSG00000028785 Hpca ENSMUST00000095807 ENSMUSP00000093486 TRANSLATION protein_coding - CCDS18682.1 1 193.0 22.0 3.948 36.9 92.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028785 Hpca ENSMUST00000135763 ENSMUSP00000120655 TRANSLATION protein_coding stop - 3 45.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028785 Hpca ENSMUST00000149763 ENSMUSP00000115619 TRANSLATION protein_coding stop - 5 161.0 17.0 3.0 0.0 74.6 0.0 -4,-5 0.0011 6 -2.0 MINOR ENSMUSG00000028785 Hpca ENSMUST00000139450 ENSMUSP00000119178 TRANSLATION protein_coding - CCDS18682.1 3 193.0 22.0 3.948 36.9 92.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028785 Hpca ENSMUST00000116442 ENSMUSP00000112143 TRANSLATION protein_coding - CCDS18682.1 3 193.0 22.0 3.948 36.9 92.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028785 Hpca ENSMUST00000030572 ENSMUSP00000030572 TRANSLATION protein_coding - CCDS18682.1 1 193.0 22.0 3.948 36.9 92.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028785 Hpca ENSMUST00000164649 ENSMUSP00000129548 TRANSLATION protein_coding - CCDS18682.1 2 193.0 22.0 3.948 36.9 92.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028785 Hpca ENSMUST00000116444 ENSMUSP00000112145 TRANSLATION protein_coding - CCDS18682.1 5 193.0 22.0 3.948 36.9 92.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028541 B4galt2 ENSMUST00000084325 ENSMUSP00000081352 TRANSLATION nonsense_mediated_decay - CCDS18539.1 2 369.0 3.0 5.8589 11.0 294.5 2.0 -2,-5 1.0 - -2.0 MINOR ENSMUSG00000028541 B4galt2 ENSMUST00000106421 ENSMUSP00000102029 TRANSLATION protein_coding - CCDS18539.1 1 369.0 3.0 5.8589 11.0 294.5 2.0 -2,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028541 B4galt2 ENSMUST00000167443 ENSMUSP00000128771 TRANSLATION nonsense_mediated_decay - - 1 224.0 0.0 1.45 0.0 103.6 2.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000028541 B4galt2 ENSMUST00000153358 ENSMUSP00000120571 TRANSLATION protein_coding stop - 3 196.0 0.0 1.95 0.0 131.1 2.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000028541 B4galt2 ENSMUST00000030266 ENSMUSP00000030266 TRANSLATION protein_coding - CCDS18539.1 1 369.0 3.0 5.8589 11.0 294.5 2.0 -2,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028541 B4galt2 ENSMUST00000137016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028541 B4galt2 ENSMUST00000171548 ENSMUSP00000126539 TRANSLATION protein_coding stop - 3 75.0 0.0 0.0 0.0 0.0 2.0 -2,-5 0.0005 - -2.0 MINOR ENSMUSG00000045973 Slc25a51 ENSMUST00000116341 ENSMUSP00000112044 TRANSLATION protein_coding - CCDS18137.1 1 298.0 0.0 2.33 19.4 103.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000045973 Slc25a51 ENSMUST00000134714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045973 Slc25a51 ENSMUST00000132815 ENSMUSP00000134132 TRANSLATION protein_coding - CCDS18137.1 2 298.0 0.0 2.33 19.4 103.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000045973 Slc25a51 ENSMUST00000151516 ENSMUSP00000134108 TRANSLATION protein_coding stop - 1 195.0 0.0 1.0 0.0 37.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000045973 Slc25a51 ENSMUST00000107796 ENSMUSP00000103425 TRANSLATION protein_coding - - 1 315.0 0.0 2.33 0.0 103.3 0.0 -4,-5 0.0233 8 12.0 MINOR ENSMUSG00000045973 Slc25a51 ENSMUST00000153904 ENSMUSP00000122620 TRANSLATION protein_coding stop - 3 205.0 0.0 1.33 0.0 62.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000028523 Dynlt5 ENSMUST00000030248 ENSMUSP00000030248 TRANSLATION protein_coding - CCDS18405.1 1 173.0 0.0 2.1089 0.4 96.0 0.0 -4,-7 0.3121 1 12.0 MINOR ENSMUSG00000028523 Dynlt5 ENSMUST00000139883 - NO_TRANSLATION retained_intron ENSMUSG00000028523 Dynlt5 ENSMUST00000125417 ENSMUSP00000117319 TRANSLATION protein_coding - CCDS51246.1 5 116.0 0.0 2.1089 0.1 96.0 0.0 -4,-5 0.1585 - 12.0 MINOR ENSMUSG00000028523 Dynlt5 ENSMUST00000116317 ENSMUSP00000112019 TRANSLATION protein_coding - CCDS18405.1 5 173.0 0.0 2.1089 0.4 96.0 0.0 -4,-7 0.3121 1 12.0 MINOR ENSMUSG00000028523 Dynlt5 ENSMUST00000220547 ENSMUSP00000152803 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000028523 Dynlt5 ENSMUST00000169211 ENSMUSP00000128228 TRANSLATION protein_coding - CCDS18405.1 1 173.0 0.0 2.1089 0.4 96.0 0.0 -4,-7 0.3121 1 12.0 MINOR ENSMUSG00000028523 Dynlt5 ENSMUST00000140654 ENSMUSP00000116692 TRANSLATION protein_coding - CCDS51246.1 2 116.0 0.0 2.1089 0.1 96.0 0.0 -4,-5 0.1585 - 12.0 MINOR ENSMUSG00000028523 Dynlt5 ENSMUST00000223169 ENSMUSP00000152761 TRANSLATION protein_coding - - 5 177.0 0.0 2.1089 26.3 96.0 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032744 Heyl ENSMUST00000040821 ENSMUSP00000040576 TRANSLATION protein_coding - CCDS18613.1 1 326.0 0.0 2.45 4.2 98.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032744 Heyl ENSMUST00000151870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032744 Heyl ENSMUST00000127172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000411 Tssk3 ENSMUST00000000421 ENSMUSP00000000421 TRANSLATION protein_coding - CCDS18693.1 1 268.0 17.0 2.0 16.7 222.4 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000059049 Frem1 ENSMUST00000130889 - NO_TRANSLATION retained_intron ENSMUSG00000059049 Frem1 ENSMUST00000071708 ENSMUSP00000071627 TRANSLATION protein_coding - CCDS38791.1 1 2191.0 11.0 3.65 0.0 851.1 0.0 3,-1 0.617 - 13.8 ALTERNATIVE:2 ENSMUSG00000059049 Frem1 ENSMUST00000141841 - NO_TRANSLATION retained_intron ENSMUSG00000059049 Frem1 ENSMUST00000107230 ENSMUSP00000102849 TRANSLATION protein_coding - CCDS57281.1 5 2172.0 11.0 3.65 0.1 863.2 0.0 3,-1 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000059049 Frem1 ENSMUST00000133610 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059049 Frem1 ENSMUST00000127886 ENSMUSP00000122467 TRANSLATION protein_coding start - 1 415.0 11.0 0.0 0.0 213.6 0.0 -4,-5 0.0016 - -2.0 MINOR ENSMUSG00000059049 Frem1 ENSMUST00000131102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058579 Cela2a ENSMUST00000127962 - NO_TRANSLATION retained_intron ENSMUSG00000058579 Cela2a ENSMUST00000155826 - NO_TRANSLATION retained_intron ENSMUSG00000058579 Cela2a ENSMUST00000102481 ENSMUSP00000099539 TRANSLATION protein_coding - CCDS18884.1 1 271.0 6.0 6.0 28.8 231.2 0.0 3,-2 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000041120 Nbl1 ENSMUST00000132900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041120 Nbl1 ENSMUST00000132940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041120 Nbl1 ENSMUST00000042844 ENSMUSP00000045608 TRANSLATION protein_coding - CCDS18839.1 1 178.0 0.0 2.8 9.0 82.3 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034042 Gpbp1l1 ENSMUST00000138837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034042 Gpbp1l1 ENSMUST00000106475 ENSMUSP00000102083 TRANSLATION protein_coding - CCDS18511.1 1 473.0 0.0 0.0 13.8 140.9 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000034042 Gpbp1l1 ENSMUST00000030460 ENSMUSP00000030460 TRANSLATION protein_coding - CCDS18511.1 1 473.0 0.0 0.0 13.8 140.9 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000034042 Gpbp1l1 ENSMUST00000131913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037139 Myom3 ENSMUST00000145304 - NO_TRANSLATION retained_intron ENSMUSG00000037139 Myom3 ENSMUST00000142177 - NO_TRANSLATION retained_intron ENSMUSG00000037139 Myom3 ENSMUST00000105854 ENSMUSP00000101480 TRANSLATION protein_coding - CCDS38921.1 5 1439.0 0.0 19.468 8.1 418.6 0.0 -4,-5 1.0 42 15.0 PRINCIPAL:1 ENSMUSG00000042333 Tnfrsf14 ENSMUST00000219534 ENSMUSP00000151575 TRANSLATION protein_coding - - 1 276.0 0.0 6.14 0.0 92.5 2.0 0,-4 0.7845 - 8.0 PRINCIPAL:4 ENSMUSG00000042333 Tnfrsf14 ENSMUST00000145296 ENSMUSP00000151279 TRANSLATION protein_coding stop - 3 91.0 0.0 1.8 0.0 0.0 0.0 0,-4 0.0031 - -2.0 MINOR ENSMUSG00000042333 Tnfrsf14 ENSMUST00000137803 ENSMUSP00000151979 TRANSLATION protein_coding stop - 3 108.0 0.0 2.66 0.0 69.9 0.0 -4,-5 0.0032 - -2.0 MINOR ENSMUSG00000042333 Tnfrsf14 ENSMUST00000152687 ENSMUSP00000117890 TRANSLATION protein_coding stop - 5 186.0 0.0 4.01 0.0 52.5 2.0 -4,-5 0.0033 - -2.0 MINOR ENSMUSG00000042333 Tnfrsf14 ENSMUST00000123514 ENSMUSP00000116757 TRANSLATION protein_coding - CCDS19017.1 1 275.0 0.0 6.14 0.0 92.5 2.0 0,-4 0.7588 - 8.0 ALTERNATIVE:2 ENSMUSG00000028885 Smpdl3b ENSMUST00000030709 ENSMUSP00000030709 TRANSLATION protein_coding - CCDS18733.1 1 456.0 4.0 7.36 1.2 68.9 0.0 3,-2 1.0 9 17.0 PRINCIPAL:1 ENSMUSG00000028796 Phc2 ENSMUST00000106080 ENSMUSP00000101690 TRANSLATION protein_coding - CCDS18674.1 1 850.0 4.0 3.516 0.0 245.0 0.0 -4,-5 0.29 6 16.0 MINOR ENSMUSG00000028796 Phc2 ENSMUST00000120946 ENSMUSP00000113875 TRANSLATION protein_coding stop - 5 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028796 Phc2 ENSMUST00000138445 ENSMUSP00000117688 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028796 Phc2 ENSMUST00000030588 ENSMUSP00000030588 TRANSLATION protein_coding - CCDS18674.1 5 850.0 4.0 3.516 0.0 245.0 0.0 -4,-5 0.29 6 16.0 MINOR ENSMUSG00000028796 Phc2 ENSMUST00000143632 ENSMUSP00000120468 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028796 Phc2 ENSMUST00000155653 - NO_TRANSLATION retained_intron ENSMUSG00000028796 Phc2 ENSMUST00000134421 ENSMUSP00000123307 TRANSLATION protein_coding stop - 5 143.0 4.0 2.382 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000028796 Phc2 ENSMUST00000136377 ENSMUSP00000116333 TRANSLATION protein_coding stop - 5 269.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000028796 Phc2 ENSMUST00000148723 - NO_TRANSLATION retained_intron ENSMUSG00000028796 Phc2 ENSMUST00000147572 ENSMUSP00000118298 TRANSLATION protein_coding stop - 3 202.0 4.0 2.316 0.0 83.5 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000028796 Phc2 ENSMUST00000133439 ENSMUSP00000117163 TRANSLATION protein_coding stop - 5 53.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028796 Phc2 ENSMUST00000106079 ENSMUSP00000101689 TRANSLATION protein_coding - CCDS57297.1 1 323.0 4.0 3.516 8.3 245.0 0.0 -4,-6 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000066153 Mup21 ENSMUST00000077719 ENSMUSP00000076899 TRANSLATION protein_coding - CCDS18235.1 1 181.0 0.0 4.68 0.1 121.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029016 Clcn6 ENSMUST00000137724 ENSMUSP00000121751 TRANSLATION protein_coding - - 5 873.0 0.0 11.63825 12.5 386.7 10.0 -4,-6 0.8211 10 11.0 ALTERNATIVE:1 ENSMUSG00000029016 Clcn6 ENSMUST00000030879 ENSMUSP00000030879 TRANSLATION protein_coding - CCDS18928.1 1 870.0 0.0 11.63825 12.5 386.7 10.0 -4,-6 1.0 11 11.0 PRINCIPAL:3 ENSMUSG00000029016 Clcn6 ENSMUST00000134377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029016 Clcn6 ENSMUST00000131232 ENSMUSP00000116153 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000029016 Clcn6 ENSMUST00000105711 ENSMUSP00000101336 TRANSLATION nonsense_mediated_decay - - 5 731.0 0.0 10.116 0.0 349.2 10.0 -4,-6 0.0324 6 -2.0 MINOR ENSMUSG00000028247 Coq3 ENSMUST00000029909 ENSMUSP00000029909 TRANSLATION protein_coding - CCDS18003.1 1 370.0 18.0 2.0 7.6 72.4 0.0 -1,3 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000028247 Coq3 ENSMUST00000142244 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078235 Fam43b ENSMUST00000105032 ENSMUSP00000100649 TRANSLATION protein_coding - CCDS38928.1 - 330.0 0.0 0.0 2.8 240.3 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000028563 Tm2d1 ENSMUST00000125034 ENSMUSP00000124188 TRANSLATION nonsense_mediated_decay start - 5 53.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028563 Tm2d1 ENSMUST00000030292 ENSMUSP00000030292 TRANSLATION protein_coding - - 1 203.0 0.0 4.78 13.0 61.4 4.0 -1,-5 0.872 1 12.0 ALTERNATIVE:1 ENSMUSG00000028563 Tm2d1 ENSMUST00000143116 ENSMUSP00000121468 TRANSLATION protein_coding start - 5 140.0 0.0 2.78 0.0 0.0 2.0 -1,-5 0.0002 - -2.0 MINOR ENSMUSG00000028563 Tm2d1 ENSMUST00000102793 ENSMUSP00000099855 TRANSLATION protein_coding - CCDS18374.1 1 208.0 0.0 4.78 13.0 61.4 4.0 -1,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000028563 Tm2d1 ENSMUST00000107051 ENSMUSP00000102666 TRANSLATION protein_coding start - 3 160.0 0.0 3.962 0.0 61.4 4.0 -4,-5 0.0173 1 -2.0 MINOR ENSMUSG00000054362 Lexm ENSMUST00000126324 ENSMUSP00000118338 TRANSLATION nonsense_mediated_decay start - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0286 - -2.0 MINOR ENSMUSG00000054362 Lexm ENSMUST00000106788 ENSMUSP00000102400 TRANSLATION protein_coding - CCDS51252.1 1 414.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.9047 2 0.0 PRINCIPAL:1 ENSMUSG00000054362 Lexm ENSMUST00000189032 ENSMUSP00000139868 TRANSLATION protein_coding - CCDS51252.1 1 414.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.9047 2 0.0 PRINCIPAL:1 ENSMUSG00000054362 Lexm ENSMUST00000067387 ENSMUSP00000066732 TRANSLATION nonsense_mediated_decay - CCDS51252.1 1 414.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.9047 - -2.0 MINOR ENSMUSG00000045699 Gm21411 ENSMUST00000238583 ENSMUSP00000158852 TRANSLATION protein_coding stop - - 373.0 19.0 0.8 0.0 190.7 0.0 -4,-7 0.8044 - -2.0 PRINCIPAL:1 ENSMUSG00000028470 Hint2 ENSMUST00000151238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028470 Hint2 ENSMUST00000030192 ENSMUSP00000030192 TRANSLATION protein_coding - CCDS18106.1 1 163.0 15.0 3.5 7.5 96.5 0.0 1,3 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000028470 Hint2 ENSMUST00000134082 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028470 Hint2 ENSMUST00000130593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028470 Hint2 ENSMUST00000134050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028470 Hint2 ENSMUST00000155985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028470 Hint2 ENSMUST00000151514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029073 Cptp ENSMUST00000151961 ENSMUSP00000115935 TRANSLATION protein_coding stop - 2 214.0 0.0 2.0 18.9 149.7 0.0 -4,-5 0.822 4 -2.0 MINOR ENSMUSG00000029073 Cptp ENSMUST00000156266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029073 Cptp ENSMUST00000030950 ENSMUSP00000030950 TRANSLATION protein_coding - CCDS19047.1 1 216.0 0.0 2.0 18.9 149.7 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000084782 Tex53 ENSMUST00000136620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000084782 Tex53 ENSMUST00000210529 ENSMUSP00000147417 TRANSLATION protein_coding - - 1 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000033770 Clcnka ENSMUST00000150334 - NO_TRANSLATION retained_intron ENSMUSG00000033770 Clcnka ENSMUST00000042617 ENSMUSP00000048520 TRANSLATION protein_coding - CCDS18871.1 1 687.0 0.0 15.2 9.6 278.7 10.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000033770 Clcnka ENSMUST00000133676 ENSMUSP00000122396 TRANSLATION protein_coding stop - 5 192.0 0.0 3.75 0.0 43.3 4.0 -4,-5 0.0037 1 -2.0 MINOR ENSMUSG00000033770 Clcnka ENSMUST00000105790 ENSMUSP00000101416 TRANSLATION protein_coding - CCDS18871.1 1 687.0 0.0 15.2 9.6 278.7 10.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000028300 C9orf72 ENSMUST00000149138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028300 C9orf72 ENSMUST00000108126 ENSMUSP00000103761 TRANSLATION protein_coding - - 1 317.0 0.0 5.4 0.0 194.6 0.0 -4,-6 0.0009 5 4.338 MINOR ENSMUSG00000028300 C9orf72 ENSMUST00000108127 ENSMUSP00000103762 TRANSLATION protein_coding - CCDS38708.1 1 481.0 0.0 6.23 19.3 320.8 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028300 C9orf72 ENSMUST00000084724 ENSMUSP00000081775 TRANSLATION protein_coding - - 1 420.0 0.0 5.23 0.0 320.8 0.0 -4,-6 0.0158 6 10.002 MINOR ENSMUSG00000028300 C9orf72 ENSMUST00000130538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028300 C9orf72 ENSMUST00000156472 - NO_TRANSLATION retained_intron ENSMUSG00000028300 C9orf72 ENSMUST00000142628 - NO_TRANSLATION retained_intron ENSMUSG00000073747 Zpld2 ENSMUST00000097849 ENSMUSP00000095461 TRANSLATION protein_coding - CCDS38911.1 1 679.0 0.0 1.68 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078502 Zfp268 ENSMUST00000105739 ENSMUSP00000101365 TRANSLATION protein_coding - CCDS84823.1 5 799.0 80.0 4.6 0.0 533.6 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078502 Zfp268 ENSMUST00000119718 ENSMUSP00000112918 TRANSLATION protein_coding - - 5 420.0 8.0 0.8 0.0 114.3 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000078502 Zfp268 ENSMUST00000097794 ENSMUSP00000095402 TRANSLATION protein_coding stop - 5 407.0 24.0 1.6 0.0 213.3 0.0 -4,-6 0.0006 - -2.0 MINOR ENSMUSG00000028736 Pax7 ENSMUST00000030508 ENSMUSP00000030508 TRANSLATION protein_coding - CCDS18850.1 1 503.0 0.0 3.8 20.7 396.3 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028736 Pax7 ENSMUST00000174681 ENSMUSP00000133536 TRANSLATION protein_coding - - 5 505.0 0.0 3.8 12.5 389.2 0.0 -4,-2 0.732 - 13.91 MINOR ENSMUSG00000028264 Spaca1 ENSMUST00000108148 ENSMUSP00000103783 TRANSLATION protein_coding - - 1 172.0 0.0 0.0 0.0 0.0 1.0 -4,-6 0.0201 2 0.0 ALTERNATIVE:2 ENSMUSG00000028264 Spaca1 ENSMUST00000084734 ENSMUSP00000081785 TRANSLATION protein_coding - CCDS71357.1 1 290.0 0.0 0.0 0.0 0.0 1.0 4,-1 0.3317 4 0.0 ALTERNATIVE:2 ENSMUSG00000028264 Spaca1 ENSMUST00000029927 ENSMUSP00000029927 TRANSLATION protein_coding - CCDS18026.1 1 305.0 0.0 0.0 1.9 0.0 1.0 4,-1 1.0 4 1.0 PRINCIPAL:2 ENSMUSG00000035572 Dcaf10 ENSMUST00000107798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035572 Dcaf10 ENSMUST00000155551 ENSMUSP00000117082 TRANSLATION protein_coding - CCDS38754.1 1 566.0 0.0 1.44 2.0 36.8 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000035572 Dcaf10 ENSMUST00000130821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035572 Dcaf10 ENSMUST00000153803 ENSMUSP00000121616 TRANSLATION protein_coding start - 5 225.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0009 2 -2.0 MINOR ENSMUSG00000028331 Trmo ENSMUST00000151903 ENSMUSP00000119785 TRANSLATION nonsense_mediated_decay start - 1 438.0 13.0 1.12 0.0 143.4 0.0 -4,-5 0.0822 3 -2.0 MINOR ENSMUSG00000028331 Trmo ENSMUST00000030015 ENSMUSP00000030015 TRANSLATION protein_coding - CCDS84727.1 1 431.0 13.0 1.12 0.4 143.4 0.0 -4,-5 0.271 3 14.0 ALTERNATIVE:2 ENSMUSG00000028331 Trmo ENSMUST00000086563 ENSMUSP00000083752 TRANSLATION protein_coding - CCDS18148.1 1 488.0 13.0 1.12 0.0 143.4 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:2 ENSMUSG00000028636 Ppcs ENSMUST00000106316 ENSMUSP00000101923 TRANSLATION protein_coding - - 1 138.0 0.0 2.0 10.8 0.0 0.0 -4,-6 0.7275 5 6.885 MINOR ENSMUSG00000028636 Ppcs ENSMUST00000140641 - NO_TRANSLATION retained_intron ENSMUSG00000028636 Ppcs ENSMUST00000030385 ENSMUSP00000030385 TRANSLATION protein_coding - CCDS18581.1 1 311.0 1.0 3.0 11.2 0.0 0.0 -4,-5 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000062157 Ifnlr1 ENSMUST00000074408 ENSMUSP00000074009 TRANSLATION protein_coding - CCDS18788.1 1 535.0 0.0 4.2 0.0 77.5 0.0 4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073755 5730409E04Rik ENSMUST00000097886 ENSMUSP00000095496 TRANSLATION protein_coding - CCDS18656.1 1 230.0 0.0 0.6 8.0 402.5 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000073755 5730409E04Rik ENSMUST00000164362 ENSMUSP00000128538 TRANSLATION protein_coding - CCDS18656.1 3 230.0 0.0 0.6 8.0 402.5 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000029027 Dffb ENSMUST00000133607 ENSMUSP00000151699 TRANSLATION nonsense_mediated_decay - - 5 160.0 0.0 3.0 0.0 109.1 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000029027 Dffb ENSMUST00000219093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029027 Dffb ENSMUST00000154458 - NO_TRANSLATION retained_intron ENSMUSG00000029027 Dffb ENSMUST00000142671 - NO_TRANSLATION retained_intron ENSMUSG00000029027 Dffb ENSMUST00000030893 ENSMUSP00000030893 TRANSLATION protein_coding - CCDS19004.1 1 344.0 4.0 6.75 0.0 392.0 0.0 -4,0 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000096154 Gm13057 ENSMUST00000105776 ENSMUSP00000101402 TRANSLATION protein_coding - - 5 481.0 0.0 2.1 0.4 0.0 0.0 -3,-6 0.6543 - 6.0 PRINCIPAL:1 ENSMUSG00000029020 Mfn2 ENSMUST00000105714 ENSMUSP00000101339 TRANSLATION protein_coding - - 1 605.0 15.0 9.88 0.0 82.8 0.0 -4,-7 0.0014 14 9.198 MINOR ENSMUSG00000029020 Mfn2 ENSMUST00000134172 ENSMUSP00000123021 TRANSLATION protein_coding stop - 3 213.0 8.0 4.33 0.0 49.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029020 Mfn2 ENSMUST00000150881 ENSMUSP00000117758 TRANSLATION protein_coding stop - 3 97.0 0.0 2.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000029020 Mfn2 ENSMUST00000030884 ENSMUSP00000030884 TRANSLATION protein_coding - CCDS38965.1 1 757.0 15.0 11.28 34.2 330.6 0.0 -4,-7 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000029020 Mfn2 ENSMUST00000105716 ENSMUSP00000101341 TRANSLATION protein_coding - CCDS38965.1 1 757.0 15.0 11.28 34.2 330.6 0.0 -4,-7 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000029020 Mfn2 ENSMUST00000124646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029020 Mfn2 ENSMUST00000105715 ENSMUSP00000101340 TRANSLATION protein_coding - CCDS38965.1 1 757.0 15.0 11.28 34.2 330.6 0.0 -4,-7 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000066141 Gm11232 ENSMUST00000084489 ENSMUSP00000081532 TRANSLATION protein_coding - - 5 295.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5999 - 0.0 PRINCIPAL:1 ENSMUSG00000001334 Fndc5 ENSMUST00000102600 ENSMUSP00000099660 TRANSLATION protein_coding - CCDS18683.1 1 209.0 0.0 2.0 1.1 41.5 1.0 4,-1 1.0 1 9.0 PRINCIPAL:2 ENSMUSG00000001334 Fndc5 ENSMUST00000249630 ENSMUSP00000159833 TRANSLATION protein_coding - - - 240.0 0.0 2.0 0.1 41.5 1.0 -3,-6 0.0284 1 8.0 ALTERNATIVE:2 ENSMUSG00000039838 Slc45a1 ENSMUST00000037827 ENSMUSP00000036774 TRANSLATION protein_coding - CCDS18973.1 1 751.0 0.0 2.2 10.5 41.9 11.0 -4,-7 1.0 2 14.832 PRINCIPAL:1 ENSMUSG00000039838 Slc45a1 ENSMUST00000117997 ENSMUSP00000112737 TRANSLATION protein_coding - - 1 675.0 0.0 2.2 0.0 43.1 9.0 -4,-7 0.0786 2 12.0 MINOR ENSMUSG00000039838 Slc45a1 ENSMUST00000147706 - NO_TRANSLATION retained_intron ENSMUSG00000012117 Dhdds ENSMUST00000146241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012117 Dhdds ENSMUST00000130464 ENSMUSP00000121656 TRANSLATION protein_coding start - 5 168.0 0.0 3.5 0.0 71.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000012117 Dhdds ENSMUST00000105889 ENSMUSP00000101512 TRANSLATION protein_coding stop - 5 258.0 2.0 7.25 0.0 261.3 0.0 -4,-5 0.0115 - -2.0 MINOR ENSMUSG00000012117 Dhdds ENSMUST00000144668 ENSMUSP00000116098 TRANSLATION protein_coding - CCDS18760.1 1 333.0 2.0 8.25 20.5 261.3 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:4 ENSMUSG00000012117 Dhdds ENSMUST00000012262 ENSMUSP00000012262 TRANSLATION protein_coding - CCDS18760.1 1 333.0 2.0 8.25 20.5 261.3 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:4 ENSMUSG00000012117 Dhdds ENSMUST00000142660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012117 Dhdds ENSMUST00000134096 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012117 Dhdds ENSMUST00000105886 ENSMUSP00000101510 TRANSLATION protein_coding - - 5 294.0 2.0 7.25 2.8 210.5 0.0 -4,-5 0.0323 2 6.37 MINOR ENSMUSG00000012117 Dhdds ENSMUST00000105885 ENSMUSP00000101509 TRANSLATION protein_coding - - 5 299.0 2.0 7.25 1.7 209.5 0.0 -4,-5 0.0292 2 6.146 MINOR ENSMUSG00000012117 Dhdds ENSMUST00000150729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012117 Dhdds ENSMUST00000105887 ENSMUSP00000101511 TRANSLATION protein_coding - - 1 334.0 2.0 8.25 20.5 261.3 0.0 -4,-5 0.8708 2 14.0 ALTERNATIVE:1 ENSMUSG00000028991 Mtor ENSMUST00000129715 - NO_TRANSLATION retained_intron ENSMUSG00000028991 Mtor ENSMUST00000123566 - NO_TRANSLATION retained_intron ENSMUSG00000028991 Mtor ENSMUST00000103221 ENSMUSP00000099510 TRANSLATION protein_coding - CCDS18937.1 1 2549.0 0.0 44.88 8.1 952.4 0.0 -4,-2 1.0 66 15.0 PRINCIPAL:1 ENSMUSG00000028991 Mtor ENSMUST00000057580 ENSMUSP00000054164 TRANSLATION protein_coding - - 1 256.0 0.0 2.36 0.0 0.0 0.0 -4,-2 0.0004 6 0.0 MINOR ENSMUSG00000060317 Acnat2 ENSMUST00000081541 ENSMUSP00000080256 TRANSLATION protein_coding - CCDS18171.1 1 420.0 3.0 4.0 0.4 400.1 0.0 -4,-6 1.0 1 11.0 PRINCIPAL:2 ENSMUSG00000060317 Acnat2 ENSMUST00000107698 ENSMUSP00000103326 TRANSLATION protein_coding - - 1 402.0 3.0 3.5 0.0 400.1 0.0 -4,-6 0.054 1 9.998 ALTERNATIVE:2 ENSMUSG00000060317 Acnat2 ENSMUST00000139564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060317 Acnat2 ENSMUST00000125123 ENSMUSP00000119135 TRANSLATION protein_coding stop - 3 204.0 0.0 2.5 0.0 142.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023075 Akirin1 ENSMUST00000142778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023075 Akirin1 ENSMUST00000153472 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023075 Akirin1 ENSMUST00000102636 ENSMUSP00000099696 TRANSLATION protein_coding - CCDS18619.1 1 191.0 0.0 1.2 14.8 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000005994 Tyrp1 ENSMUST00000133932 ENSMUSP00000119167 TRANSLATION protein_coding start/stop - 1 176.0 3.0 2.0 0.0 38.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000005994 Tyrp1 ENSMUST00000102831 ENSMUSP00000099895 TRANSLATION protein_coding - CCDS18290.1 1 537.0 5.0 7.33 8.6 121.0 1.0 4,-1 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000005994 Tyrp1 ENSMUST00000133655 ENSMUSP00000117080 TRANSLATION protein_coding stop - 2 229.0 2.0 2.0 0.0 0.0 0.0 4,-1 0.0013 2 -2.0 MINOR ENSMUSG00000005994 Tyrp1 ENSMUST00000006151 ENSMUSP00000006151 TRANSLATION protein_coding - CCDS18290.1 1 537.0 5.0 7.33 8.6 121.0 1.0 4,-1 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000006392 Med8 ENSMUST00000126089 ENSMUSP00000123622 TRANSLATION protein_coding stop - 3 18.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006392 Med8 ENSMUST00000135201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006392 Med8 ENSMUST00000073881 ENSMUSP00000073544 TRANSLATION protein_coding - - 1 129.0 0.0 3.0 0.0 143.1 0.0 -4,-6 0.0 2 1.998 MINOR ENSMUSG00000006392 Med8 ENSMUST00000106384 ENSMUSP00000101992 TRANSLATION protein_coding - CCDS18548.1 1 234.0 0.0 4.5 0.0 264.1 0.0 -4,-5 0.0137 3 8.808 MINOR ENSMUSG00000006392 Med8 ENSMUST00000130421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006392 Med8 ENSMUST00000125235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006392 Med8 ENSMUST00000084319 ENSMUSP00000081346 TRANSLATION protein_coding - CCDS71459.1 1 179.0 0.0 3.0 10.8 152.7 0.0 -4,-6 0.4049 2 3.89 MINOR ENSMUSG00000006392 Med8 ENSMUST00000144577 ENSMUSP00000120158 TRANSLATION protein_coding stop - 3 75.0 0.0 2.0 0.0 97.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000006392 Med8 ENSMUST00000152633 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006392 Med8 ENSMUST00000019229 ENSMUSP00000019229 TRANSLATION protein_coding - CCDS38854.1 1 268.0 0.0 5.0 21.7 300.6 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000005045 Chd5 ENSMUST00000124423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005045 Chd5 ENSMUST00000164662 ENSMUSP00000132600 TRANSLATION protein_coding - CCDS51394.1 1 1915.0 7.0 20.9 0.0 1089.9 0.0 -4,-5 0.4879 8 14.0 ALTERNATIVE:2 ENSMUSG00000005045 Chd5 ENSMUST00000136134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005045 Chd5 ENSMUST00000005175 ENSMUSP00000005175 TRANSLATION protein_coding - - 5 1946.0 7.0 20.9 0.1 1089.9 0.0 -4,-5 0.4312 9 14.0 ALTERNATIVE:2 ENSMUSG00000005045 Chd5 ENSMUST00000030775 ENSMUSP00000030775 TRANSLATION protein_coding - CCDS38984.1 5 1952.0 7.0 20.9 2.5 1089.9 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:2 ENSMUSG00000028874 Fgr ENSMUST00000138179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028874 Fgr ENSMUST00000171223 ENSMUSP00000128411 TRANSLATION protein_coding - CCDS18739.1 1 517.0 17.0 9.75 0.4 463.4 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000028874 Fgr ENSMUST00000124451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028874 Fgr ENSMUST00000030693 ENSMUSP00000030693 TRANSLATION protein_coding - CCDS18739.1 1 517.0 17.0 9.75 0.4 463.4 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000028613 Lrp8 ENSMUST00000238304 - NO_TRANSLATION retained_intron ENSMUSG00000028613 Lrp8 ENSMUST00000238405 - NO_TRANSLATION retained_intron ENSMUSG00000028613 Lrp8 ENSMUST00000126573 ENSMUSP00000118020 TRANSLATION protein_coding - - 5 694.0 42.0 14.055 0.3 431.1 5.0 3,-2 0.0291 8 2.382 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000106732 ENSMUSP00000102343 TRANSLATION protein_coding start - 1 832.0 41.0 14.255 0.0 431.1 5.0 3,-2 0.0169 10 -2.0 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000145832 - NO_TRANSLATION retained_intron ENSMUSG00000028613 Lrp8 ENSMUST00000143601 ENSMUSP00000115854 TRANSLATION nonsense_mediated_decay - - 1 996.0 65.0 15.865 2.6 603.8 5.0 3,-2 1.0 12 -2.0 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000123140 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028613 Lrp8 ENSMUST00000238693 ENSMUSP00000158682 TRANSLATION protein_coding start - - 124.0 0.0 0.0 0.0 0.0 5.0 -4,-7 0.0041 1 -2.0 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000238584 ENSMUSP00000158610 TRANSLATION protein_coding - - - 828.0 42.0 14.055 3.4 431.1 5.0 3,-2 0.3435 10 3.271 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000135591 - NO_TRANSLATION retained_intron ENSMUSG00000028613 Lrp8 ENSMUST00000238421 ENSMUSP00000158608 TRANSLATION protein_coding - - - 787.0 34.0 12.925 1.1 387.2 5.0 3,-2 0.0699 10 0.157 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000238207 - NO_TRANSLATION retained_intron ENSMUSG00000028613 Lrp8 ENSMUST00000238255 ENSMUSP00000158681 TRANSLATION protein_coding start - - 189.0 0.0 1.0 0.0 0.0 5.0 -4,-7 0.0041 4 -2.0 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000147319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028613 Lrp8 ENSMUST00000238651 ENSMUSP00000158650 TRANSLATION protein_coding - - - 726.0 34.0 13.255 0.0 397.3 5.0 3,-2 0.0121 8 0.78 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000238658 ENSMUSP00000158812 TRANSLATION nonsense_mediated_decay start - - 135.0 0.0 2.5 0.0 78.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000146552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028613 Lrp8 ENSMUST00000135022 ENSMUSP00000158799 TRANSLATION protein_coding start/stop - 5 157.0 5.0 3.63 0.0 89.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000106731 ENSMUSP00000102342 TRANSLATION protein_coding - CCDS51255.1 1 870.0 47.0 15.055 3.7 467.2 5.0 3,-2 0.4851 10 5.38 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000030356 ENSMUSP00000030356 TRANSLATION protein_coding - - 5 955.0 60.0 14.865 2.6 567.7 5.0 3,-2 0.5419 12 11.093 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000106733 ENSMUSP00000102344 TRANSLATION protein_coding - - 5 896.0 60.0 14.865 2.6 567.7 5.0 3,-2 0.4461 10 11.093 MINOR ENSMUSG00000028613 Lrp8 ENSMUST00000238570 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028613 Lrp8 ENSMUST00000238569 ENSMUSP00000158644 TRANSLATION protein_coding - - - 996.0 65.0 15.865 2.6 603.8 5.0 3,-2 1.0 12 18.593 PRINCIPAL:1 ENSMUSG00000028334 Nans ENSMUST00000132345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028334 Nans ENSMUST00000150584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028334 Nans ENSMUST00000137874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028334 Nans ENSMUST00000030018 ENSMUSP00000030018 TRANSLATION protein_coding - CCDS18152.1 1 359.0 4.0 6.0 36.9 287.7 0.0 -4,-5 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000063800 Prpf38a ENSMUST00000079213 ENSMUSP00000078207 TRANSLATION protein_coding - CCDS18452.1 1 312.0 0.0 4.55 27.1 238.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000063800 Prpf38a ENSMUST00000125106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063800 Prpf38a ENSMUST00000132951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073888 Ccl27a ENSMUST00000151142 ENSMUSP00000154658 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073888 Ccl27a ENSMUST00000138337 - NO_TRANSLATION retained_intron ENSMUSG00000073888 Ccl27a ENSMUST00000131349 ENSMUSP00000154160 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073888 Ccl27a ENSMUST00000155322 ENSMUSP00000153974 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073888 Ccl27a ENSMUST00000108037 ENSMUSP00000103672 TRANSLATION protein_coding - CCDS38721.1 2 164.0 0.0 3.25 0.4 30.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073888 Ccl27a ENSMUST00000074387 ENSMUSP00000073990 TRANSLATION protein_coding - CCDS18072.1 1 120.0 0.0 2.0 2.7 30.8 0.0 3,-2 0.776 - 10.128 MINOR ENSMUSG00000073888 Ccl27a ENSMUST00000108036 ENSMUSP00000103671 TRANSLATION protein_coding - CCDS38721.1 2 164.0 0.0 3.25 0.4 30.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073888 Ccl27a ENSMUST00000126759 - NO_TRANSLATION retained_intron ENSMUSG00000073888 Ccl27a ENSMUST00000136768 - NO_TRANSLATION retained_intron ENSMUSG00000073888 Ccl27a ENSMUST00000133556 - NO_TRANSLATION retained_intron ENSMUSG00000073888 Ccl27a ENSMUST00000144090 - NO_TRANSLATION retained_intron ENSMUSG00000073888 Ccl27a ENSMUST00000133572 - NO_TRANSLATION retained_intron ENSMUSG00000073888 Ccl27a ENSMUST00000108035 ENSMUSP00000103670 TRANSLATION protein_coding - CCDS84714.1 1 127.0 0.0 2.0 0.0 30.8 0.0 -4,-7 0.127 - 9.498 MINOR ENSMUSG00000073888 Ccl27a ENSMUST00000108032 ENSMUSP00000103667 TRANSLATION protein_coding - CCDS51144.1 1 87.0 0.0 1.25 6.4 0.0 0.0 -4,-5 0.9792 - 3.998 MINOR ENSMUSG00000073888 Ccl27a ENSMUST00000108033 ENSMUSP00000103668 TRANSLATION protein_coding - - 1 119.0 0.0 2.0 1.5 30.8 0.0 3,-2 0.3442 - 9.684 MINOR ENSMUSG00000073888 Ccl27a ENSMUST00000143676 - NO_TRANSLATION retained_intron ENSMUSG00000073888 Ccl27a ENSMUST00000151909 - NO_TRANSLATION retained_intron ENSMUSG00000073888 Ccl27a ENSMUST00000155240 ENSMUSP00000154105 TRANSLATION protein_coding - CCDS51144.1 2 87.0 0.0 1.25 6.4 0.0 0.0 -4,-5 0.9792 - 3.998 MINOR ENSMUSG00000073888 Ccl27a ENSMUST00000173865 ENSMUSP00000133827 TRANSLATION protein_coding - CCDS51144.1 1 87.0 0.0 1.25 6.4 0.0 0.0 -4,-5 0.9792 - 3.998 MINOR ENSMUSG00000029070 Mxra8 ENSMUST00000030947 ENSMUSP00000030947 TRANSLATION protein_coding - CCDS19044.1 1 442.0 0.0 3.165 4.3 106.6 0.0 3,-2 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000029070 Mxra8 ENSMUST00000126487 - NO_TRANSLATION retained_intron ENSMUSG00000029070 Mxra8 ENSMUST00000133592 - NO_TRANSLATION retained_intron ENSMUSG00000029070 Mxra8 ENSMUST00000143886 - NO_TRANSLATION retained_intron ENSMUSG00000029070 Mxra8 ENSMUST00000141766 - NO_TRANSLATION retained_intron ENSMUSG00000029070 Mxra8 ENSMUST00000132142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029070 Mxra8 ENSMUST00000141883 ENSMUSP00000114929 TRANSLATION protein_coding stop - 2 311.0 0.0 3.165 0.0 106.6 0.0 2,-2 0.0981 9 -2.0 MINOR ENSMUSG00000078520 Cela3a ENSMUST00000024200 ENSMUSP00000024200 TRANSLATION protein_coding - CCDS51332.1 5 283.0 6.0 5.08 0.0 206.6 0.0 2,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028420 Tmem38b ENSMUST00000151206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028420 Tmem38b ENSMUST00000150803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028420 Tmem38b ENSMUST00000144167 ENSMUSP00000120304 TRANSLATION protein_coding stop - 3 163.0 0.0 3.08 0.0 212.9 3.0 -1,-4 0.0024 4 -2.0 MINOR ENSMUSG00000028420 Tmem38b ENSMUST00000030127 ENSMUSP00000030127 TRANSLATION protein_coding - CCDS18193.1 1 292.0 0.0 4.88 4.7 261.2 4.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000066031 Pramel25 ENSMUST00000085144 ENSMUSP00000082232 TRANSLATION protein_coding - CCDS18894.1 1 498.0 0.0 2.45 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000066031 Pramel25 ENSMUST00000105770 ENSMUSP00000101396 TRANSLATION protein_coding - CCDS84818.1 2 175.0 0.0 0.92 0.0 0.0 0.0 -4,-5 0.1496 - 2.256 MINOR ENSMUSG00000066031 Pramel25 ENSMUST00000149739 ENSMUSP00000115387 TRANSLATION protein_coding stop - 5 150.0 0.0 0.93 0.0 0.0 0.0 -4,-6 0.0102 - -2.0 MINOR ENSMUSG00000066031 Pramel25 ENSMUST00000139978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070583 Fv1 ENSMUST00000094481 ENSMUSP00000092054 TRANSLATION protein_coding - CCDS38964.1 - 459.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.8934 10 0.0 PRINCIPAL:1 ENSMUSG00000040410 Fbxl4 ENSMUST00000131972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040410 Fbxl4 ENSMUST00000039234 ENSMUSP00000042219 TRANSLATION protein_coding - CCDS18004.1 1 621.0 0.0 2.7 17.8 34.3 0.0 -2,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000040410 Fbxl4 ENSMUST00000185029 ENSMUSP00000138825 TRANSLATION nonsense_mediated_decay - - 1 466.0 0.0 1.6 0.7 34.3 0.0 -2,-2 0.1013 5 -2.0 MINOR ENSMUSG00000040410 Fbxl4 ENSMUST00000184455 ENSMUSP00000138841 TRANSLATION nonsense_mediated_decay - - 1 290.0 0.0 0.0 0.1 0.0 0.0 -2,-2 0.0023 4 -2.0 MINOR ENSMUSG00000040410 Fbxl4 ENSMUST00000184582 ENSMUSP00000139158 TRANSLATION nonsense_mediated_decay - - 1 582.0 0.0 2.2 0.0 34.3 0.0 -2,-2 0.0352 5 -2.0 MINOR ENSMUSG00000078575 Gm12887 ENSMUST00000106265 ENSMUSP00000101872 TRANSLATION protein_coding - CCDS38868.1 5 119.0 0.0 1.3 0.0 28.1 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000006389 Mpl ENSMUST00000006556 ENSMUSP00000006556 TRANSLATION protein_coding - CCDS51284.1 1 633.0 0.0 3.517 4.4 100.5 1.0 2,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000006389 Mpl ENSMUST00000106375 ENSMUSP00000101983 TRANSLATION protein_coding - - 1 566.0 0.0 3.197 0.0 100.5 1.0 -2,-4 0.0268 - 11.358 MINOR ENSMUSG00000006389 Mpl ENSMUST00000168404 ENSMUSP00000130167 TRANSLATION protein_coding start - 1 465.0 0.0 3.017 0.0 100.5 0.0 2,-2 0.0497 1 -2.0 MINOR ENSMUSG00000006389 Mpl ENSMUST00000102671 ENSMUSP00000099732 TRANSLATION protein_coding - CCDS18552.1 1 625.0 0.0 3.319 0.3 100.5 1.0 2,-2 0.4136 1 11.604 MINOR ENSMUSG00000006389 Mpl ENSMUST00000216417 - NO_TRANSLATION retained_intron ENSMUSG00000111410 Gm49337 ENSMUST00000216692 ENSMUSP00000150163 TRANSLATION protein_coding,RT - - 5 502.0 0.0 8.4 1.3 343.1 0.0 -4,-2 0.8098 - -2.0 PRINCIPAL:1 ENSMUSG00000033365 Ipo13 ENSMUST00000134752 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033365 Ipo13 ENSMUST00000140661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033365 Ipo13 ENSMUST00000136670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033365 Ipo13 ENSMUST00000036156 ENSMUSP00000035989 TRANSLATION protein_coding - CCDS18542.1 1 963.0 0.0 16.18 15.1 125.4 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000033365 Ipo13 ENSMUST00000153918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033365 Ipo13 ENSMUST00000155524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066148 Prpf4 ENSMUST00000084524 ENSMUSP00000081572 TRANSLATION protein_coding - CCDS18239.1 1 521.0 0.0 9.9375 16.5 188.3 0.0 -4,-6 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000066148 Prpf4 ENSMUST00000148774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037242 Clic4 ENSMUST00000037099 ENSMUSP00000041453 TRANSLATION protein_coding - CCDS18783.1 1 253.0 17.0 5.75 31.8 33.3 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000037242 Clic4 ENSMUST00000143370 - NO_TRANSLATION retained_intron ENSMUSG00000078552 Dcdc2b ENSMUST00000143374 - NO_TRANSLATION retained_intron ENSMUSG00000078552 Dcdc2b ENSMUST00000179209 ENSMUSP00000135913 TRANSLATION protein_coding - CCDS57299.1 5 287.0 0.0 2.2 0.0 125.8 0.0 -4,0 0.9818 4 11.616 PRINCIPAL:1 ENSMUSG00000078552 Dcdc2b ENSMUST00000106037 ENSMUSP00000101653 TRANSLATION protein_coding start - 5 340.0 0.0 2.35 1.1 125.8 0.0 -4,-1 0.1763 4 -2.0 MINOR ENSMUSG00000028460 Sit1 ENSMUST00000123526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028460 Sit1 ENSMUST00000030180 ENSMUSP00000030180 TRANSLATION protein_coding - CCDS18096.1 1 180.0 0.0 0.8 2.8 0.0 0.0 -4,-7 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000028576 Ift74 ENSMUST00000152289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028576 Ift74 ENSMUST00000030311 ENSMUSP00000030311 TRANSLATION protein_coding - CCDS51232.1 5 600.0 0.0 2.9285 22.0 0.0 0.0 -4,-2 1.0 15 10.0 PRINCIPAL:1 ENSMUSG00000028576 Ift74 ENSMUST00000107104 ENSMUSP00000102721 TRANSLATION protein_coding - CCDS71420.1 2 388.0 0.0 2.4285 0.0 0.0 0.0 -4,-2 0.0926 9 4.974 MINOR ENSMUSG00000029074 Ttll10 ENSMUST00000030951 - NO_TRANSLATION retained_intron ENSMUSG00000029074 Ttll10 ENSMUST00000051509 ENSMUSP00000055671 TRANSLATION protein_coding - CCDS19058.1 1 675.0 22.0 2.11 0.0 157.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000029074 Ttll10 ENSMUST00000183563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029074 Ttll10 ENSMUST00000153649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029074 Ttll10 ENSMUST00000184750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029074 Ttll10 ENSMUST00000184348 ENSMUSP00000139316 TRANSLATION protein_coding - - 5 704.0 22.0 2.11 0.0 157.2 0.0 -4,-6 0.1183 - 12.0 ALTERNATIVE:2 ENSMUSG00000029074 Ttll10 ENSMUST00000184684 ENSMUSP00000139077 TRANSLATION protein_coding stop - 5 458.0 22.0 2.11 0.0 157.2 0.0 -4,-5 0.0747 - -2.0 MINOR ENSMUSG00000029074 Ttll10 ENSMUST00000097731 - NO_TRANSLATION retained_intron ENSMUSG00000066030 Oog2 ENSMUST00000129781 ENSMUSP00000159583 TRANSLATION protein_coding - - 3 115.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0066 - 2.592 MINOR ENSMUSG00000066030 Oog2 ENSMUST00000143978 ENSMUSP00000115150 TRANSLATION protein_coding - - 2 494.0 2.0 1.85 0.0 0.0 0.0 -4,-5 0.1237 - 8.0 ALTERNATIVE:2 ENSMUSG00000066030 Oog2 ENSMUST00000141847 - NO_TRANSLATION retained_intron ENSMUSG00000066030 Oog2 ENSMUST00000249104 ENSMUSP00000159582 TRANSLATION protein_coding - CCDS18901.1 - 476.0 2.0 1.85 0.0 0.0 0.0 -4,-6 0.9963 - 8.0 PRINCIPAL:2 ENSMUSG00000066030 Oog2 ENSMUST00000249105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066030 Oog2 ENSMUST00000080405 ENSMUSP00000079267 TRANSLATION protein_coding - CCDS18901.1 1 476.0 2.0 1.85 0.0 0.0 0.0 -4,-6 0.9963 - 8.0 PRINCIPAL:2 ENSMUSG00000070619 Pramel31 ENSMUST00000094526 ENSMUSP00000092103 TRANSLATION protein_coding - CCDS18904.1 1 481.0 0.0 2.1 0.4 0.0 0.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096682 Ifna5 ENSMUST00000102804 ENSMUSP00000099868 TRANSLATION protein_coding - CCDS18345.1 - 189.0 3.0 1.0 5.3 210.7 0.0 4,-1 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000023153 Tmem52 ENSMUST00000145796 - NO_TRANSLATION retained_intron ENSMUSG00000023153 Tmem52 ENSMUST00000023920 ENSMUSP00000023920 TRANSLATION protein_coding - CCDS57319.1 1 196.0 0.0 0.8 0.4 239.4 2.0 0,-4 0.6101 - 8.0 ALTERNATIVE:2 ENSMUSG00000023153 Tmem52 ENSMUST00000178188 ENSMUSP00000136899 TRANSLATION protein_coding - CCDS57320.1 2 182.0 0.0 0.8 0.3 198.2 1.0 0,-3 0.2251 - 6.0 MINOR ENSMUSG00000023153 Tmem52 ENSMUST00000131599 - NO_TRANSLATION retained_intron ENSMUSG00000023153 Tmem52 ENSMUST00000178238 ENSMUSP00000136919 TRANSLATION protein_coding - CCDS57318.1 1 202.0 0.0 0.8 0.4 231.4 2.0 0,-4 0.8778 - 8.0 PRINCIPAL:2 ENSMUSG00000028445 Enho ENSMUST00000127306 ENSMUSP00000137902 TRANSLATION protein_coding - CCDS59655.1 1 76.0 0.0 0.8 11.0 0.0 0.0 1,-4 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000066097 Cyp2j11 ENSMUST00000015368 ENSMUSP00000132180 TRANSLATION protein_coding - CCDS38814.1 1 504.0 31.0 9.0 6.6 439.3 0.0 0,-4 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000035407 Kank4 ENSMUST00000102790 ENSMUSP00000099851 TRANSLATION protein_coding - CCDS18379.1 1 1016.0 0.0 3.975 0.0 151.7 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000035407 Kank4 ENSMUST00000137270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035539 Ccdc180 ENSMUST00000151024 ENSMUSP00000122332 TRANSLATION protein_coding start/stop - 5 376.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000035539 Ccdc180 ENSMUST00000149903 ENSMUSP00000119784 TRANSLATION protein_coding - - 5 1479.0 0.0 0.0 0.0 859.1 0.0 -4,-7 0.9774 1 2.0 PRINCIPAL:2 ENSMUSG00000035539 Ccdc180 ENSMUST00000178561 ENSMUSP00000136714 TRANSLATION protein_coding - CCDS57275.1 5 1664.0 0.0 0.0 0.0 859.1 0.0 -4,-6 0.6705 1 2.0 ALTERNATIVE:2 ENSMUSG00000035539 Ccdc180 ENSMUST00000127261 - NO_TRANSLATION retained_intron ENSMUSG00000028476 Reck ENSMUST00000128463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028476 Reck ENSMUST00000030198 ENSMUSP00000030198 TRANSLATION protein_coding - CCDS18116.1 1 971.0 0.0 1.0 8.7 58.2 0.0 3,-2 1.0 20 15.0 PRINCIPAL:1 ENSMUSG00000028476 Reck ENSMUST00000130415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034926 Dhcr24 ENSMUST00000047973 ENSMUSP00000038063 TRANSLATION protein_coding - CCDS18420.1 1 516.0 0.0 8.8 23.8 52.4 0.0 2,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000078577 Tmco2 ENSMUST00000106268 ENSMUSP00000101875 TRANSLATION protein_coding - CCDS38866.1 1 187.0 3.0 0.0 4.3 312.0 0.0 -4,-6 0.9938 1 11.0 PRINCIPAL:1 ENSMUSG00000028536 2610528J11Rik ENSMUST00000030261 ENSMUSP00000030261 TRANSLATION protein_coding - CCDS18554.1 1 111.0 2.0 0.5 2.2 71.2 1.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028536 2610528J11Rik ENSMUST00000106367 ENSMUSP00000101975 TRANSLATION protein_coding - CCDS18554.1 2 111.0 2.0 0.5 2.2 71.2 1.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038764 Ptpn3 ENSMUST00000151964 ENSMUSP00000120111 TRANSLATION protein_coding stop - 5 37.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000038764 Ptpn3 ENSMUST00000130900 ENSMUSP00000114805 TRANSLATION protein_coding stop - 5 57.0 0.0 0.528 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000038764 Ptpn3 ENSMUST00000153926 ENSMUSP00000122490 TRANSLATION protein_coding stop - 5 229.0 0.0 4.208 0.0 130.9 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000038764 Ptpn3 ENSMUST00000075637 ENSMUSP00000075063 TRANSLATION protein_coding - CCDS51181.1 5 913.0 11.0 15.208 10.2 549.2 0.0 -4,-2 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000038764 Ptpn3 ENSMUST00000150445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038764 Ptpn3 ENSMUST00000123664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046435 Pramel24 ENSMUST00000078695 ENSMUSP00000077761 TRANSLATION protein_coding - CCDS51357.1 5 474.0 0.0 2.1 0.0 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078675 Mup16 ENSMUST00000107483 ENSMUSP00000103107 TRANSLATION protein_coding - CCDS57278.1 1 180.0 0.0 4.88 0.0 110.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078675 Mup16 ENSMUST00000095051 ENSMUSP00000092661 TRANSLATION protein_coding - CCDS57278.1 1 180.0 0.0 4.88 0.0 110.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028948 Nol9 ENSMUST00000131696 ENSMUSP00000146142 TRANSLATION nonsense_mediated_decay start - 1 361.0 0.0 0.232 0.0 0.0 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000028948 Nol9 ENSMUST00000103197 ENSMUSP00000099486 TRANSLATION protein_coding - CCDS18986.1 1 671.0 7.0 1.932 0.0 118.1 0.0 -4,-2 1.0 8 12.0 PRINCIPAL:2 ENSMUSG00000028948 Nol9 ENSMUST00000147797 - NO_TRANSLATION retained_intron ENSMUSG00000028948 Nol9 ENSMUST00000105663 - NO_TRANSLATION retained_intron ENSMUSG00000028948 Nol9 ENSMUST00000084116 ENSMUSP00000081133 TRANSLATION protein_coding - CCDS51389.1 1 714.0 7.0 1.932 0.1 118.1 0.0 -4,-2 0.3375 8 12.0 ALTERNATIVE:2 ENSMUSG00000028884 Rpa2 ENSMUST00000153046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028884 Rpa2 ENSMUST00000130444 - NO_TRANSLATION retained_intron ENSMUSG00000028884 Rpa2 ENSMUST00000133415 - NO_TRANSLATION retained_intron ENSMUSG00000028884 Rpa2 ENSMUST00000102561 ENSMUSP00000099621 TRANSLATION protein_coding - CCDS18734.1 1 270.0 0.0 5.55 15.8 91.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000028884 Rpa2 ENSMUST00000130090 - NO_TRANSLATION retained_intron ENSMUSG00000028884 Rpa2 ENSMUST00000156968 ENSMUSP00000123780 TRANSLATION protein_coding start - 5 70.0 0.0 1.5 0.0 47.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028314 Toporsl ENSMUST00000029995 ENSMUSP00000029995 TRANSLATION protein_coding - CCDS18182.1 1 683.0 2.0 0.2 0.0 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000028314 Toporsl ENSMUST00000107671 ENSMUSP00000103298 TRANSLATION protein_coding - CCDS18182.1 1 683.0 2.0 0.2 0.0 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000063929 Cyp4a32 ENSMUST00000084342 ENSMUSP00000081369 TRANSLATION protein_coding - CCDS38844.1 5 509.0 30.0 11.0 7.7 439.4 0.0 -3,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000063929 Cyp4a32 ENSMUST00000129918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028530 Jak1 ENSMUST00000155328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028530 Jak1 ENSMUST00000149297 ENSMUSP00000122957 TRANSLATION protein_coding stop - 3 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0066 - -2.0 MINOR ENSMUSG00000028530 Jak1 ENSMUST00000102781 ENSMUSP00000099842 TRANSLATION protein_coding - CCDS18393.1 1 1153.0 0.0 18.55 7.3 487.2 0.0 -4,-5 1.0 25 14.0 PRINCIPAL:1 ENSMUSG00000028530 Jak1 ENSMUST00000147211 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028530 Jak1 ENSMUST00000132292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028530 Jak1 ENSMUST00000151235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028530 Jak1 ENSMUST00000136167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028530 Jak1 ENSMUST00000125968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001333 Sync ENSMUST00000102599 ENSMUSP00000099659 TRANSLATION protein_coding - CCDS18687.1 1 470.0 0.0 0.0 0.0 54.1 0.0 -4,-6 1.0 13 6.0 PRINCIPAL:1 ENSMUSG00000001333 Sync ENSMUST00000146448 - NO_TRANSLATION retained_intron ENSMUSG00000028898 Trnau1ap ENSMUST00000141317 - NO_TRANSLATION retained_intron ENSMUSG00000028898 Trnau1ap ENSMUST00000137520 ENSMUSP00000127767 TRANSLATION nonsense_mediated_decay - - 3 47.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028898 Trnau1ap ENSMUST00000125513 ENSMUSP00000126492 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028898 Trnau1ap ENSMUST00000105960 ENSMUSP00000101580 TRANSLATION protein_coding stop - 3 70.0 0.0 2.06 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028898 Trnau1ap ENSMUST00000144387 - NO_TRANSLATION retained_intron ENSMUSG00000028898 Trnau1ap ENSMUST00000131524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028898 Trnau1ap ENSMUST00000150959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028898 Trnau1ap ENSMUST00000105962 ENSMUSP00000101582 TRANSLATION protein_coding - - 5 247.0 0.0 5.27 5.4 47.0 0.0 -4,-5 0.1118 3 7.736 MINOR ENSMUSG00000028898 Trnau1ap ENSMUST00000146166 - NO_TRANSLATION retained_intron ENSMUSG00000028898 Trnau1ap ENSMUST00000147652 ENSMUSP00000127273 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 2.745 0.0 47.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028898 Trnau1ap ENSMUST00000127402 ENSMUSP00000120657 TRANSLATION protein_coding stop - 5 146.0 0.0 3.31 0.0 47.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028898 Trnau1ap ENSMUST00000030730 ENSMUSP00000030730 TRANSLATION protein_coding - CCDS18722.1 1 287.0 0.0 6.27 23.0 96.2 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000029059 Prxl2b ENSMUST00000030935 ENSMUSP00000030935 TRANSLATION protein_coding - CCDS19016.1 1 201.0 0.0 5.5 24.3 76.4 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000029059 Prxl2b ENSMUST00000132281 ENSMUSP00000116611 TRANSLATION protein_coding stop - 3 114.0 0.0 3.0 0.0 74.9 0.0 -4,-5 0.0046 4 -2.0 MINOR ENSMUSG00000029059 Prxl2b ENSMUST00000123513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028479 Gne ENSMUST00000173274 ENSMUSP00000134406 TRANSLATION protein_coding stop - 3 292.0 0.0 7.83 0.0 0.0 0.0 -4,-7 0.0121 11 -2.0 MINOR ENSMUSG00000028479 Gne ENSMUST00000173976 - NO_TRANSLATION retained_intron ENSMUSG00000028479 Gne ENSMUST00000144985 ENSMUSP00000118443 TRANSLATION protein_coding stop - 3 213.0 0.0 4.0 0.0 0.0 0.0 -4,-7 0.0072 5 -2.0 MINOR ENSMUSG00000028479 Gne ENSMUST00000133709 ENSMUSP00000133551 TRANSLATION nonsense_mediated_decay - - 5 56.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0094 2 -2.0 MINOR ENSMUSG00000028479 Gne ENSMUST00000173569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028479 Gne ENSMUST00000030201 ENSMUSP00000030201 TRANSLATION protein_coding - CCDS18120.2 1 753.0 30.0 15.71 10.1 0.0 0.0 -4,-5 0.562 24 13.516 MINOR ENSMUSG00000028479 Gne ENSMUST00000173383 ENSMUSP00000133440 TRANSLATION protein_coding stop - 2 133.0 0.0 3.0 0.0 0.0 0.0 -4,-7 0.0037 5 -2.0 MINOR ENSMUSG00000028479 Gne ENSMUST00000172514 - NO_TRANSLATION retained_intron ENSMUSG00000028479 Gne ENSMUST00000174522 ENSMUSP00000134191 TRANSLATION nonsense_mediated_decay start - 1 37.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0078 - -2.0 MINOR ENSMUSG00000028479 Gne ENSMUST00000173234 ENSMUSP00000133521 TRANSLATION protein_coding - - 5 648.0 20.0 14.38 1.0 0.0 0.0 -4,-7 0.0887 20 3.342 MINOR ENSMUSG00000028479 Gne ENSMUST00000128439 ENSMUSP00000115858 TRANSLATION protein_coding stop - 3 121.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.001 3 -2.0 MINOR ENSMUSG00000028479 Gne ENSMUST00000102936 ENSMUSP00000100000 TRANSLATION protein_coding - CCDS51170.1 1 722.0 30.0 15.71 25.0 0.0 0.0 -4,-7 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000028479 Gne ENSMUST00000172533 ENSMUSP00000134040 TRANSLATION nonsense_mediated_decay - - 5 479.0 4.0 11.38 0.0 0.0 0.0 -4,-7 0.0144 19 -2.0 MINOR ENSMUSG00000028479 Gne ENSMUST00000140724 ENSMUSP00000122793 TRANSLATION protein_coding stop - 2 118.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.001 3 -2.0 MINOR ENSMUSG00000028469 Npr2 ENSMUST00000144418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028469 Npr2 ENSMUST00000123351 ENSMUSP00000117761 TRANSLATION protein_coding start/stop - 5 176.0 0.0 2.525 0.0 43.1 3.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028469 Npr2 ENSMUST00000151603 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028469 Npr2 ENSMUST00000030191 ENSMUSP00000030191 TRANSLATION protein_coding - CCDS18105.1 1 1047.0 0.0 13.159 10.3 517.3 3.0 1,-2 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000028469 Npr2 ENSMUST00000143160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028469 Npr2 ENSMUST00000130093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028469 Npr2 ENSMUST00000145817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028469 Npr2 ENSMUST00000123883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028469 Npr2 ENSMUST00000107874 ENSMUSP00000103506 TRANSLATION protein_coding - - 5 1033.0 0.0 10.559 0.0 411.7 3.0 1,-2 0.0509 15 0.798 MINOR ENSMUSG00000028469 Npr2 ENSMUST00000128549 ENSMUSP00000114385 TRANSLATION protein_coding start - 1 613.0 0.0 9.049 0.0 364.9 3.0 -4,-5 0.0012 9 -2.0 MINOR ENSMUSG00000038607 Gng10 ENSMUST00000041160 ENSMUSP00000042705 TRANSLATION protein_coding - CCDS18217.1 1 68.0 0.0 1.75 32.9 56.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000038607 Gng10 ENSMUST00000126507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028862 Map3k6 ENSMUST00000123612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028862 Map3k6 ENSMUST00000127681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028862 Map3k6 ENSMUST00000030677 ENSMUSP00000030677 TRANSLATION protein_coding - CCDS18744.1 1 1291.0 19.0 11.655 2.7 692.8 0.0 -4,-5 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000028862 Map3k6 ENSMUST00000134895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038598 Shoc1 ENSMUST00000107547 ENSMUSP00000103171 TRANSLATION protein_coding - - 5 1481.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.712 - 0.0 PRINCIPAL:1 ENSMUSG00000038598 Shoc1 ENSMUST00000122832 - NO_TRANSLATION retained_intron ENSMUSG00000028240 Cyp7a1 ENSMUST00000029905 ENSMUSP00000029905 TRANSLATION protein_coding - CCDS17950.1 1 503.0 25.0 5.24 10.0 289.4 0.0 -2,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000028240 Cyp7a1 ENSMUST00000147346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028517 Plpp3 ENSMUST00000064139 ENSMUSP00000065719 TRANSLATION protein_coding - CCDS18417.1 1 312.0 5.0 3.54 30.2 99.8 0.0 -4,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000047799 Oog4 ENSMUST00000061277 ENSMUSP00000052217 TRANSLATION protein_coding - CCDS18890.1 1 430.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.159 - 4.614 MINOR ENSMUSG00000047799 Oog4 ENSMUST00000073641 ENSMUSP00000073325 TRANSLATION protein_coding - CCDS84817.1 1 502.0 0.0 2.6 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000058183 Mmel1 ENSMUST00000129623 - NO_TRANSLATION retained_intron ENSMUSG00000058183 Mmel1 ENSMUST00000105635 ENSMUSP00000101260 TRANSLATION protein_coding - - 5 745.0 3.0 19.78 0.0 641.5 1.0 -2,-5 0.2341 9 11.0 ALTERNATIVE:2 ENSMUSG00000058183 Mmel1 ENSMUST00000163732 ENSMUSP00000131753 TRANSLATION protein_coding - CCDS51401.1 1 766.0 3.0 19.78 0.0 649.3 1.0 -2,-5 1.0 9 11.0 PRINCIPAL:2 ENSMUSG00000058183 Mmel1 ENSMUST00000079269 ENSMUSP00000078252 TRANSLATION protein_coding - - 5 768.0 3.0 19.78 0.0 641.5 1.0 -2,-5 0.3572 9 11.0 ALTERNATIVE:2 ENSMUSG00000058183 Mmel1 ENSMUST00000131758 ENSMUSP00000121243 TRANSLATION protein_coding stop - 3 150.0 0.0 3.75 0.0 135.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000078588 Ccdc24 ENSMUST00000154439 - NO_TRANSLATION retained_intron ENSMUSG00000078588 Ccdc24 ENSMUST00000171052 ENSMUSP00000129502 TRANSLATION protein_coding - - 5 296.0 0.0 0.0 0.0 214.1 0.0 -4,-5 0.7365 - 6.0 PRINCIPAL:1 ENSMUSG00000078588 Ccdc24 ENSMUST00000163974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078588 Ccdc24 ENSMUST00000164853 ENSMUSP00000132114 TRANSLATION protein_coding,RT - CCDS51281.1 2 268.0 0.0 0.0 0.0 172.8 0.0 -4,-5 0.0622 - -2.0 MINOR ENSMUSG00000078588 Ccdc24 ENSMUST00000106422 ENSMUSP00000102030 TRANSLATION protein_coding - CCDS51281.1 1 268.0 0.0 0.0 0.0 172.8 0.0 -4,-5 0.0622 - 3.522 MINOR ENSMUSG00000078588 Ccdc24 ENSMUST00000166325 ENSMUSP00000131493 TRANSLATION protein_coding stop - 3 187.0 0.0 0.0 0.0 182.6 0.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000078588 Ccdc24 ENSMUST00000130758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078588 Ccdc24 ENSMUST00000131938 ENSMUSP00000131215 TRANSLATION nonsense_mediated_decay - - 3 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078588 Ccdc24 ENSMUST00000167287 ENSMUSP00000126161 TRANSLATION protein_coding start - 3 91.0 0.0 0.0 0.0 67.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046450 Or13j1 ENSMUST00000055401 ENSMUSP00000060230 TRANSLATION protein_coding - CCDS18110.1 - 312.0 0.0 1.0 10.3 176.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046450 Or13j1 ENSMUST00000107862 ENSMUSP00000103494 TRANSLATION protein_coding - CCDS18110.1 3 312.0 0.0 1.0 10.3 176.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046450 Or13j1 ENSMUST00000217544 ENSMUSP00000149725 TRANSLATION protein_coding - CCDS18110.1 5 312.0 0.0 1.0 10.3 176.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028382 Ptbp3 ENSMUST00000173884 ENSMUSP00000133996 TRANSLATION protein_coding stop - 3 146.0 0.0 3.35 0.0 43.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000028382 Ptbp3 ENSMUST00000140925 ENSMUSP00000122138 TRANSLATION protein_coding - - 3 104.0 0.0 1.33 0.0 0.0 0.0 -4,-6 0.0 4 0.0 MINOR ENSMUSG00000028382 Ptbp3 ENSMUST00000173699 ENSMUSP00000134290 TRANSLATION protein_coding - - 5 457.0 0.0 10.98 6.8 228.6 0.0 -4,-5 0.257 10 6.318 MINOR ENSMUSG00000028382 Ptbp3 ENSMUST00000151313 - NO_TRANSLATION retained_intron ENSMUSG00000028382 Ptbp3 ENSMUST00000134879 ENSMUSP00000134490 TRANSLATION nonsense_mediated_decay - - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028382 Ptbp3 ENSMUST00000172768 ENSMUSP00000134102 TRANSLATION protein_coding - - 5 520.0 0.0 12.31 21.8 228.6 0.0 -4,-5 0.8338 13 11.496 ALTERNATIVE:1 ENSMUSG00000028382 Ptbp3 ENSMUST00000174748 ENSMUSP00000133884 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028382 Ptbp3 ENSMUST00000148331 ENSMUSP00000122840 TRANSLATION protein_coding - - 5 520.0 0.0 12.31 21.8 228.6 0.0 -4,-5 0.8338 13 11.496 ALTERNATIVE:1 ENSMUSG00000028382 Ptbp3 ENSMUST00000173268 - NO_TRANSLATION retained_intron ENSMUSG00000028382 Ptbp3 ENSMUST00000030076 ENSMUSP00000030076 TRANSLATION protein_coding - CCDS18221.1 1 523.0 0.0 12.31 24.8 228.6 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000028382 Ptbp3 ENSMUST00000102883 ENSMUSP00000099947 TRANSLATION protein_coding - CCDS18220.2 1 551.0 0.0 12.31 15.9 228.6 0.0 -4,-5 0.9226 14 10.504 MINOR ENSMUSG00000028382 Ptbp3 ENSMUST00000172471 ENSMUSP00000133886 TRANSLATION protein_coding start/stop - 5 188.0 0.0 4.3 0.0 161.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028382 Ptbp3 ENSMUST00000174586 ENSMUSP00000133612 TRANSLATION protein_coding - - 5 554.0 0.0 12.31 15.9 228.6 0.0 -4,-5 0.7747 14 10.504 MINOR ENSMUSG00000028776 Tinagl1 ENSMUST00000132545 ENSMUSP00000135453 TRANSLATION protein_coding stop - 2 161.0 0.0 0.2 0.0 0.0 0.0 1,-3 0.0016 2 -2.0 MINOR ENSMUSG00000028776 Tinagl1 ENSMUST00000030560 ENSMUSP00000030560 TRANSLATION nonsense_mediated_decay - CCDS18708.2 1 466.0 3.0 4.536 4.4 178.2 0.0 1,-3 1.0 11 -2.0 MINOR ENSMUSG00000028776 Tinagl1 ENSMUST00000145774 - NO_TRANSLATION retained_intron ENSMUSG00000028776 Tinagl1 ENSMUST00000133660 - NO_TRANSLATION retained_intron ENSMUSG00000028776 Tinagl1 ENSMUST00000175992 ENSMUSP00000134900 TRANSLATION protein_coding - - 5 435.0 3.0 4.336 0.0 178.2 0.0 1,-3 0.0912 11 14.598 MINOR ENSMUSG00000028776 Tinagl1 ENSMUST00000145000 - NO_TRANSLATION retained_intron ENSMUSG00000028776 Tinagl1 ENSMUST00000175822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028776 Tinagl1 ENSMUST00000105999 ENSMUSP00000101621 TRANSLATION protein_coding - CCDS18708.2 1 466.0 3.0 4.536 4.4 178.2 0.0 1,-3 1.0 11 17.0 PRINCIPAL:1 ENSMUSG00000028776 Tinagl1 ENSMUST00000105998 ENSMUSP00000101620 TRANSLATION protein_coding - CCDS18708.2 1 466.0 3.0 4.536 4.4 178.2 0.0 1,-3 1.0 11 17.0 PRINCIPAL:1 ENSMUSG00000073684 Faap20 ENSMUST00000126803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073684 Faap20 ENSMUST00000143709 ENSMUSP00000121522 TRANSLATION protein_coding start - 3 160.0 4.0 0.75 0.0 211.4 0.0 -4,-5 0.063 3 -2.0 MINOR ENSMUSG00000073684 Faap20 ENSMUST00000097747 ENSMUSP00000095354 TRANSLATION protein_coding - - 1 176.0 4.0 0.75 0.0 211.4 0.0 -4,-1 0.11 3 12.0 ALTERNATIVE:2 ENSMUSG00000073684 Faap20 ENSMUST00000126713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073684 Faap20 ENSMUST00000105627 ENSMUSP00000101252 TRANSLATION protein_coding - CCDS84835.1 2 173.0 4.0 0.75 0.0 211.4 0.0 -4,-2 0.347 3 12.0 ALTERNATIVE:2 ENSMUSG00000073684 Faap20 ENSMUST00000178473 ENSMUSP00000137116 TRANSLATION protein_coding - CCDS57317.1 1 186.0 4.0 0.75 0.4 211.4 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:2 ENSMUSG00000073684 Faap20 ENSMUST00000122957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073684 Faap20 ENSMUST00000156404 - NO_TRANSLATION retained_intron ENSMUSG00000073684 Faap20 ENSMUST00000148406 ENSMUSP00000117360 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000073684 Faap20 ENSMUST00000149468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028398 Dmac1 ENSMUST00000030103 ENSMUSP00000030103 TRANSLATION protein_coding - CCDS18288.1 1 111.0 0.0 1.55 4.6 70.5 0.0 -4,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000028427 Aqp7 ENSMUST00000144201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028427 Aqp7 ENSMUST00000054945 ENSMUSP00000093007 TRANSLATION protein_coding - CCDS18055.1 1 303.0 0.0 6.0 0.0 164.8 6.0 -4,-6 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000028427 Aqp7 ENSMUST00000149517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028427 Aqp7 ENSMUST00000030136 ENSMUSP00000030136 TRANSLATION protein_coding - CCDS18055.1 1 303.0 0.0 6.0 0.0 164.8 6.0 -4,-6 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000043155 Hpdl ENSMUST00000055436 ENSMUSP00000062327 TRANSLATION protein_coding - CCDS18519.1 - 371.0 3.0 0.25 7.7 0.0 0.0 -4,0 1.0 7 11.0 PRINCIPAL:1 ENSMUSG00000028861 Mrps15 ENSMUST00000030675 ENSMUSP00000030675 TRANSLATION protein_coding - CCDS18641.1 1 258.0 0.0 4.5 2.7 80.2 0.0 -3,1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000028861 Mrps15 ENSMUST00000124614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028861 Mrps15 ENSMUST00000138739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023151 Lrrc69 ENSMUST00000143565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023151 Lrrc69 ENSMUST00000108276 ENSMUSP00000103911 TRANSLATION protein_coding - CCDS38696.1 1 347.0 2.0 7.5 8.4 104.1 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000023151 Lrrc69 ENSMUST00000023917 ENSMUSP00000023917 TRANSLATION protein_coding - CCDS38696.1 1 347.0 2.0 7.5 8.4 104.1 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000039653 Baat ENSMUST00000043056 ENSMUSP00000041983 TRANSLATION protein_coding - CCDS18173.1 1 420.0 0.0 2.8 1.1 394.7 0.0 -4,-7 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000039653 Baat ENSMUST00000166036 ENSMUSP00000129603 TRANSLATION protein_coding - CCDS18173.1 3 420.0 0.0 2.8 1.1 394.7 0.0 -4,-7 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000028972 Car6 ENSMUST00000105683 ENSMUSP00000101308 TRANSLATION protein_coding - - 1 261.0 3.0 6.75 0.0 231.6 0.0 -4,-5 0.0004 12 9.246 MINOR ENSMUSG00000028972 Car6 ENSMUST00000126449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028972 Car6 ENSMUST00000134648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028972 Car6 ENSMUST00000030817 ENSMUSP00000030817 TRANSLATION protein_coding - CCDS51386.1 1 317.0 3.0 8.05 0.0 284.2 0.0 2,-2 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000089945 Pakap ENSMUST00000098066 ENSMUSP00000095674 TRANSLATION nonsense_mediated_decay,RT - - 5 139.0 0.0 0.0 0.0 71.8 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000089945 Pakap ENSMUST00000150412 ENSMUSP00000117466 TRANSLATION protein_coding,RT start - 5 1137.0 0.0 0.0 0.0 125.5 0.0 -4,-7 0.73 - -2.0 PRINCIPAL:5 ENSMUSG00000089945 Pakap ENSMUST00000126465 ENSMUSP00000130230 TRANSLATION nonsense_mediated_decay,RT - - 5 139.0 0.0 0.0 0.0 71.8 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000028251 Tstd3 ENSMUST00000029915 ENSMUSP00000029915 TRANSLATION protein_coding - CCDS51128.1 1 157.0 6.0 2.75 3.5 50.9 0.0 -4,-2 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000003411 Rab3b ENSMUST00000157062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003411 Rab3b ENSMUST00000106650 ENSMUSP00000102261 TRANSLATION protein_coding - CCDS18459.1 1 219.0 20.0 4.0 33.9 203.3 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000003411 Rab3b ENSMUST00000003502 ENSMUSP00000003502 TRANSLATION protein_coding - CCDS18459.1 1 219.0 20.0 4.0 33.9 203.3 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000003411 Rab3b ENSMUST00000106651 ENSMUSP00000102262 TRANSLATION protein_coding - - 5 228.0 20.0 4.0 19.6 190.5 0.0 -4,-5 0.6435 2 19.492 MINOR ENSMUSG00000066224 Arid3c ENSMUST00000150809 ENSMUSP00000116411 TRANSLATION protein_coding - CCDS57266.1 1 379.0 0.0 2.35 1.1 70.7 0.0 -4,-2 0.5138 - 8.067 ALTERNATIVE:2 ENSMUSG00000066224 Arid3c ENSMUST00000084698 ENSMUSP00000081748 TRANSLATION protein_coding - CCDS38719.1 1 409.0 0.0 2.35 2.5 70.7 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000066224 Arid3c ENSMUST00000171251 ENSMUSP00000127678 TRANSLATION protein_coding - CCDS38719.1 5 409.0 0.0 2.35 2.5 70.7 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000028386 Slc46a2 ENSMUST00000030081 ENSMUSP00000030081 TRANSLATION protein_coding - CCDS18227.1 1 479.0 0.0 0.975 5.2 56.9 0.0 -4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000028871 Rspo1 ENSMUST00000140698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028871 Rspo1 ENSMUST00000030687 ENSMUSP00000030687 TRANSLATION protein_coding - CCDS18633.1 1 265.0 0.0 3.0 12.3 183.8 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000006221 Hspb7 ENSMUST00000102486 ENSMUSP00000099544 TRANSLATION protein_coding - CCDS18873.1 1 169.0 0.0 2.0 16.4 51.7 0.0 -4,0 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000041954 Tnfrsf18 ENSMUST00000103173 ENSMUSP00000099462 TRANSLATION protein_coding - CCDS19056.1 1 228.0 0.0 2.15 3.4 0.0 2.0 1,-3 1.0 3 7.0 PRINCIPAL:2 ENSMUSG00000041954 Tnfrsf18 ENSMUST00000125100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041954 Tnfrsf18 ENSMUST00000040274 ENSMUSP00000040035 TRANSLATION protein_coding - CCDS19057.1 1 132.0 0.0 1.55 0.0 0.0 0.0 1,-3 0.163 3 4.326 MINOR ENSMUSG00000041954 Tnfrsf18 ENSMUST00000141260 - NO_TRANSLATION retained_intron ENSMUSG00000041954 Tnfrsf18 ENSMUST00000122001 ENSMUSP00000113277 TRANSLATION protein_coding - - 1 314.0 0.0 2.15 0.0 0.0 2.0 1,-3 0.1475 3 6.0 ALTERNATIVE:2 ENSMUSG00000041954 Tnfrsf18 ENSMUST00000124339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028990 Lzic ENSMUST00000141293 ENSMUSP00000119294 TRANSLATION protein_coding stop - 3 65.0 0.0 2.08 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028990 Lzic ENSMUST00000030842 ENSMUSP00000030842 TRANSLATION protein_coding - CCDS18961.1 1 190.0 0.0 5.43 36.9 111.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000028990 Lzic ENSMUST00000138464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028990 Lzic ENSMUST00000146427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028990 Lzic ENSMUST00000124413 ENSMUSP00000116150 TRANSLATION protein_coding stop - 2 56.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000094618 Gm13271 ENSMUST00000094992 ENSMUSP00000092600 TRANSLATION protein_coding - CCDS38801.1 - 182.0 2.0 0.4 0.0 93.2 0.0 0,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029007 Agtrap ENSMUST00000137393 - NO_TRANSLATION retained_intron ENSMUSG00000029007 Agtrap ENSMUST00000152323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029007 Agtrap ENSMUST00000030865 ENSMUSP00000030865 TRANSLATION protein_coding - CCDS18930.1 1 161.0 0.0 2.632 8.7 223.9 0.0 -1,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000028527 Ak4 ENSMUST00000106945 ENSMUSP00000102558 TRANSLATION protein_coding - CCDS18394.1 1 223.0 12.0 6.5 18.7 223.2 0.0 -3,-1 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000028527 Ak4 ENSMUST00000102780 ENSMUSP00000099841 TRANSLATION protein_coding - CCDS18394.1 5 223.0 12.0 6.5 18.7 223.2 0.0 -3,-1 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000028527 Ak4 ENSMUST00000133055 ENSMUSP00000115454 TRANSLATION protein_coding stop - 3 123.0 9.0 3.25 0.0 106.0 0.0 -3,-6 0.0 2 -2.0 MINOR ENSMUSG00000028527 Ak4 ENSMUST00000131397 ENSMUSP00000115456 TRANSLATION protein_coding stop - 2 115.0 10.0 3.25 0.0 128.7 0.0 -3,-1 0.0 6 -2.0 MINOR ENSMUSG00000028527 Ak4 ENSMUST00000155749 ENSMUSP00000121112 TRANSLATION protein_coding start - 3 141.0 8.0 4.25 0.0 101.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000028527 Ak4 ENSMUST00000151561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028527 Ak4 ENSMUST00000106946 ENSMUSP00000102559 TRANSLATION protein_coding - CCDS18394.1 2 223.0 12.0 6.5 18.7 223.2 0.0 -3,-1 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000028545 Bend5 ENSMUST00000138394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028545 Bend5 ENSMUST00000123667 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028545 Bend5 ENSMUST00000030274 ENSMUSP00000030274 TRANSLATION protein_coding - CCDS18472.1 1 421.0 0.0 0.0 17.0 53.2 0.0 -4,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000028545 Bend5 ENSMUST00000129760 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028545 Bend5 ENSMUST00000139876 ENSMUSP00000119368 TRANSLATION protein_coding start - 2 171.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028545 Bend5 ENSMUST00000130523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057572 Zbtb8os ENSMUST00000106047 ENSMUSP00000101662 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057572 Zbtb8os ENSMUST00000141235 ENSMUSP00000120925 TRANSLATION protein_coding - CCDS18689.1 1 167.0 0.0 5.33 11.5 158.6 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000057572 Zbtb8os ENSMUST00000146767 ENSMUSP00000114628 TRANSLATION nonsense_mediated_decay - - 1 146.0 0.0 4.33 0.0 122.3 0.0 -4,-5 0.0018 2 -2.0 MINOR ENSMUSG00000057572 Zbtb8os ENSMUST00000140272 - NO_TRANSLATION retained_intron ENSMUSG00000057572 Zbtb8os ENSMUST00000119480 ENSMUSP00000113004 TRANSLATION protein_coding - - 5 136.0 0.0 3.38 1.0 103.7 0.0 -4,-5 0.0086 1 4.806 MINOR ENSMUSG00000038668 Lpar1 ENSMUST00000107570 ENSMUSP00000103196 TRANSLATION protein_coding - CCDS71391.1 1 346.0 0.0 3.08 8.3 130.5 7.0 -4,-7 0.8322 4 14.028 MINOR ENSMUSG00000038668 Lpar1 ENSMUST00000107575 ENSMUSP00000103201 TRANSLATION protein_coding - CCDS18212.1 1 364.0 0.0 3.08 15.4 130.5 7.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000038668 Lpar1 ENSMUST00000107571 ENSMUSP00000103197 TRANSLATION protein_coding - CCDS18212.1 5 364.0 0.0 3.08 15.4 130.5 7.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000038668 Lpar1 ENSMUST00000145361 ENSMUSP00000116856 TRANSLATION protein_coding stop - 2 45.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038668 Lpar1 ENSMUST00000107574 ENSMUSP00000103200 TRANSLATION protein_coding - CCDS18212.1 5 364.0 0.0 3.08 15.4 130.5 7.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000038668 Lpar1 ENSMUST00000147354 ENSMUSP00000123694 TRANSLATION protein_coding stop - 2 56.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038668 Lpar1 ENSMUST00000155170 ENSMUSP00000121440 TRANSLATION protein_coding stop - 5 75.0 0.0 1.58 0.0 0.0 2.0 -4,-6 0.0002 1 -2.0 MINOR ENSMUSG00000038668 Lpar1 ENSMUST00000055018 ENSMUSP00000052581 TRANSLATION protein_coding - CCDS18212.1 1 364.0 0.0 3.08 15.4 130.5 7.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000008489 Elavl2 ENSMUST00000107109 ENSMUSP00000102726 TRANSLATION protein_coding - CCDS51230.1 5 359.0 0.0 6.71 7.5 221.5 0.0 -4,-5 0.4013 5 8.584 MINOR ENSMUSG00000008489 Elavl2 ENSMUST00000107124 ENSMUSP00000102741 TRANSLATION protein_coding - CCDS51230.1 1 359.0 0.0 6.71 7.5 221.5 0.0 -4,-5 0.4013 5 8.584 MINOR ENSMUSG00000008489 Elavl2 ENSMUST00000107118 ENSMUSP00000102735 TRANSLATION protein_coding - - 5 376.0 0.0 6.61 9.7 221.5 0.0 -2,-6 0.3792 6 8.67 MINOR ENSMUSG00000008489 Elavl2 ENSMUST00000147611 ENSMUSP00000117770 TRANSLATION protein_coding stop - 3 83.0 0.0 1.36 0.0 0.0 0.0 -2,-6 0.0 1 -2.0 MINOR ENSMUSG00000008489 Elavl2 ENSMUST00000107120 ENSMUSP00000102737 TRANSLATION protein_coding - CCDS84753.1 5 388.0 0.0 6.71 31.7 221.5 0.0 -2,-6 1.0 6 11.736 PRINCIPAL:4 ENSMUSG00000008489 Elavl2 ENSMUST00000176469 - NO_TRANSLATION retained_intron ENSMUSG00000008489 Elavl2 ENSMUST00000102799 ENSMUSP00000099863 TRANSLATION protein_coding - CCDS18354.1 1 373.0 0.0 6.842 6.1 221.5 0.0 -4,-6 0.483 5 8.664 MINOR ENSMUSG00000008489 Elavl2 ENSMUST00000176151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008489 Elavl2 ENSMUST00000128599 - NO_TRANSLATION retained_intron ENSMUSG00000008489 Elavl2 ENSMUST00000008633 ENSMUSP00000008633 TRANSLATION protein_coding - CCDS18355.1 1 360.0 0.0 6.71 12.1 221.5 0.0 -4,-5 0.537 5 9.184 MINOR ENSMUSG00000008489 Elavl2 ENSMUST00000107116 ENSMUSP00000102733 TRANSLATION protein_coding - - 5 389.0 0.0 6.71 31.7 221.5 0.0 -2,-6 0.8688 6 11.736 ALTERNATIVE:1 ENSMUSG00000008489 Elavl2 ENSMUST00000107110 ENSMUSP00000102727 TRANSLATION protein_coding - CCDS18356.1 1 347.0 0.0 6.61 5.7 221.5 0.0 -4,-5 0.3539 5 8.15 MINOR ENSMUSG00000008489 Elavl2 ENSMUST00000107111 ENSMUSP00000102728 TRANSLATION protein_coding - - 5 346.0 0.0 6.61 5.7 221.5 0.0 -4,-5 0.2589 5 8.15 MINOR ENSMUSG00000008489 Elavl2 ENSMUST00000144769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008489 Elavl2 ENSMUST00000177109 ENSMUSP00000135780 TRANSLATION protein_coding stop - 3 125.0 0.0 3.61 0.0 77.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000008489 Elavl2 ENSMUST00000176362 ENSMUSP00000135038 TRANSLATION protein_coding stop - 3 23.0 0.0 0.36 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028672 Hmgcl ENSMUST00000135644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028672 Hmgcl ENSMUST00000151879 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028672 Hmgcl ENSMUST00000134135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028672 Hmgcl ENSMUST00000148613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028672 Hmgcl ENSMUST00000030432 ENSMUSP00000030432 TRANSLATION protein_coding - CCDS18795.1 1 325.0 5.0 7.5 14.7 241.9 0.0 -3,1 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000036822 Topors ENSMUST00000042575 ENSMUSP00000046843 TRANSLATION protein_coding - CCDS38710.1 1 1033.0 8.0 0.0 0.1 41.0 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000071019 Sdr16c6 ENSMUST00000095151 ENSMUSP00000092773 TRANSLATION protein_coding - CCDS38688.1 5 316.0 27.0 6.0 4.4 151.0 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000071019 Sdr16c6 ENSMUST00000108383 ENSMUSP00000104020 TRANSLATION protein_coding - CCDS38688.1 1 316.0 27.0 6.0 4.4 151.0 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000028801 Stpg1 ENSMUST00000063707 ENSMUSP00000067647 TRANSLATION protein_coding - CCDS18787.1 1 341.0 0.0 0.0 0.4 54.4 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000028801 Stpg1 ENSMUST00000153891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028801 Stpg1 ENSMUST00000123221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048706 Lurap1l ENSMUST00000055922 ENSMUSP00000062628 TRANSLATION protein_coding - CCDS18291.1 1 221.0 0.0 0.0 5.3 177.0 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000057236 Rbbp4 ENSMUST00000135585 ENSMUSP00000116517 TRANSLATION protein_coding stop - 3 48.0 0.0 1.5 0.0 54.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057236 Rbbp4 ENSMUST00000147183 - NO_TRANSLATION retained_intron ENSMUSG00000057236 Rbbp4 ENSMUST00000102598 ENSMUSP00000099658 TRANSLATION protein_coding - CCDS18688.1 1 425.0 0.0 10.93 34.9 194.3 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000057236 Rbbp4 ENSMUST00000140291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028974 Dffa ENSMUST00000103216 ENSMUSP00000099505 TRANSLATION protein_coding - CCDS18952.1 1 265.0 0.0 3.0 1.8 326.7 0.0 -4,-6 0.1817 6 10.208 MINOR ENSMUSG00000028974 Dffa ENSMUST00000153781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028974 Dffa ENSMUST00000030816 ENSMUSP00000030816 TRANSLATION protein_coding - CCDS18951.1 1 331.0 0.0 4.0 7.8 327.2 0.0 -4,-6 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000028284 Map3k7 ENSMUST00000131310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028284 Map3k7 ENSMUST00000126632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028284 Map3k7 ENSMUST00000037607 ENSMUSP00000040307 TRANSLATION protein_coding - CCDS51133.1 1 606.0 18.0 7.5 9.2 205.8 0.0 -4,-6 1.0 13 17.0 PRINCIPAL:4 ENSMUSG00000028284 Map3k7 ENSMUST00000143138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028284 Map3k7 ENSMUST00000131114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028284 Map3k7 ENSMUST00000108184 ENSMUSP00000103819 TRANSLATION protein_coding - - 5 518.0 18.0 7.5 1.0 205.8 0.0 -4,-6 0.2085 10 14.0 MINOR ENSMUSG00000028284 Map3k7 ENSMUST00000108183 ENSMUSP00000103818 TRANSLATION protein_coding - - 5 491.0 18.0 7.5 1.0 205.8 0.0 -4,-6 0.2224 10 14.0 MINOR ENSMUSG00000028284 Map3k7 ENSMUST00000147462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028284 Map3k7 ENSMUST00000080933 ENSMUSP00000079734 TRANSLATION protein_coding - CCDS18014.1 1 579.0 18.0 7.5 8.0 205.8 0.0 -4,-6 0.9276 13 16.562 ALTERNATIVE:1 ENSMUSG00000078350 Smim1 ENSMUST00000132541 ENSMUSP00000138471 TRANSLATION protein_coding - CCDS59664.1 3 78.0 0.0 1.0 13.6 143.3 1.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078350 Smim1 ENSMUST00000182191 ENSMUSP00000138710 TRANSLATION protein_coding - - 1 67.0 0.0 0.0 0.0 44.2 0.0 -4,-5 0.0 - 0.054 MINOR ENSMUSG00000078350 Smim1 ENSMUST00000126119 ENSMUSP00000138560 TRANSLATION protein_coding - CCDS59664.1 2 78.0 0.0 1.0 13.6 143.3 1.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078350 Smim1 ENSMUST00000139569 ENSMUSP00000138127 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 29.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078350 Smim1 ENSMUST00000146426 ENSMUSP00000138306 TRANSLATION protein_coding stop - 1 33.0 0.0 0.0 0.0 38.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078350 Smim1 ENSMUST00000146054 ENSMUSP00000138605 TRANSLATION protein_coding - CCDS59664.1 1 78.0 0.0 1.0 13.6 143.3 1.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078350 Smim1 ENSMUST00000182151 ENSMUSP00000138692 TRANSLATION protein_coding - CCDS59664.1 2 78.0 0.0 1.0 13.6 143.3 1.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078350 Smim1 ENSMUST00000126624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078350 Smim1 ENSMUST00000145527 ENSMUSP00000138448 TRANSLATION protein_coding - CCDS59664.1 2 78.0 0.0 1.0 13.6 143.3 1.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078350 Smim1 ENSMUST00000146543 ENSMUSP00000138267 TRANSLATION protein_coding - - 1 67.0 0.0 0.0 0.0 44.2 0.0 -4,-5 0.0 - 0.054 MINOR ENSMUSG00000078350 Smim1 ENSMUST00000131325 ENSMUSP00000138777 TRANSLATION protein_coding - - 5 67.0 0.0 0.0 0.0 44.2 0.0 -4,-5 0.0 - 0.054 MINOR ENSMUSG00000078350 Smim1 ENSMUST00000143047 ENSMUSP00000138733 TRANSLATION protein_coding - CCDS59664.1 1 78.0 0.0 1.0 13.6 143.3 1.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078350 Smim1 ENSMUST00000125533 ENSMUSP00000138324 TRANSLATION protein_coding - CCDS59664.1 1 78.0 0.0 1.0 13.6 143.3 1.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078350 Smim1 ENSMUST00000130175 ENSMUSP00000138675 TRANSLATION protein_coding - CCDS59664.1 5 78.0 0.0 1.0 13.6 143.3 1.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000050493 Fam167b ENSMUST00000142699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050493 Fam167b ENSMUST00000052835 ENSMUSP00000050531 TRANSLATION protein_coding - CCDS51307.1 1 162.0 0.0 0.5 9.9 81.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000023267 Gabrr2 ENSMUST00000024035 ENSMUSP00000024035 TRANSLATION protein_coding - CCDS18020.1 1 490.0 0.0 5.78 11.2 282.0 7.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000023267 Gabrr2 ENSMUST00000108162 ENSMUSP00000103797 TRANSLATION protein_coding - - 1 465.0 0.0 5.78 5.3 282.0 7.0 4,-1 0.6152 - 13.266 MINOR ENSMUSG00000023267 Gabrr2 ENSMUST00000131920 ENSMUSP00000118514 TRANSLATION protein_coding stop - 5 203.0 0.0 3.65 0.0 179.4 2.0 -4,-2 0.0015 - -2.0 MINOR ENSMUSG00000023267 Gabrr2 ENSMUST00000147889 ENSMUSP00000114337 TRANSLATION protein_coding start - 3 221.0 0.0 4.18 0.0 196.7 7.0 -4,-6 0.0045 - -2.0 MINOR ENSMUSG00000028217 Cdh17 ENSMUST00000029871 ENSMUSP00000029871 TRANSLATION protein_coding - CCDS17972.1 1 827.0 57.0 14.35 3.2 189.1 0.0 4,-1 1.0 24 19.0 PRINCIPAL:1 ENSMUSG00000028217 Cdh17 ENSMUST00000108303 ENSMUSP00000103938 TRANSLATION protein_coding - - 2 728.0 56.0 12.816 0.0 189.1 0.0 4,-1 0.0967 19 14.268 MINOR ENSMUSG00000100713 Ifna7 ENSMUST00000105143 ENSMUSP00000100774 TRANSLATION protein_coding - CCDS18342.1 - 190.0 0.0 1.0 5.3 208.9 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038827 Abitram ENSMUST00000152638 - NO_TRANSLATION retained_intron ENSMUSG00000038827 Abitram ENSMUST00000131520 ENSMUSP00000115102 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038827 Abitram ENSMUST00000045368 ENSMUSP00000047275 TRANSLATION protein_coding - CCDS38766.1 1 193.0 0.0 4.4 0.0 27.4 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000038827 Abitram ENSMUST00000147763 ENSMUSP00000114249 TRANSLATION nonsense_mediated_decay start - 3 98.0 0.0 1.9 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000121585 Gm38423 ENSMUST00000249258 ENSMUSP00000159638 TRANSLATION protein_coding - - - 360.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.6926 - 6.0 PRINCIPAL:1 ENSMUSG00000028392 Bspry ENSMUST00000030088 ENSMUSP00000030088 TRANSLATION protein_coding - CCDS18241.1 1 486.0 4.0 4.93 0.0 101.3 0.0 -4,-5 0.3656 5 12.0 ALTERNATIVE:2 ENSMUSG00000028392 Bspry ENSMUST00000107449 ENSMUSP00000103073 TRANSLATION protein_coding - - 1 473.0 4.0 4.93 0.0 101.3 0.0 -4,-5 0.7538 5 12.0 PRINCIPAL:2 ENSMUSG00000028392 Bspry ENSMUST00000132237 ENSMUSP00000119504 TRANSLATION nonsense_mediated_decay - - 5 123.0 4.0 0.6 0.0 26.9 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000039759 Thap3 ENSMUST00000146471 - NO_TRANSLATION retained_intron ENSMUSG00000039759 Thap3 ENSMUST00000036680 ENSMUSP00000035240 TRANSLATION protein_coding - CCDS18982.1 1 218.0 5.0 1.28 1.3 62.1 0.0 -4,0 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000039759 Thap3 ENSMUST00000105665 ENSMUSP00000101290 TRANSLATION protein_coding - CCDS51387.1 1 184.0 5.0 1.28 0.3 62.1 0.0 -4,0 0.2652 - 11.0 ALTERNATIVE:2 ENSMUSG00000028645 Slc2a1 ENSMUST00000134105 ENSMUSP00000118641 TRANSLATION protein_coding stop - 2 140.0 0.0 3.41 0.0 129.1 8.0 -2,-5 0.0037 1 -2.0 MINOR ENSMUSG00000028645 Slc2a1 ENSMUST00000174372 ENSMUSP00000134714 TRANSLATION nonsense_mediated_decay - - 5 173.0 0.0 4.358 0.0 174.7 9.0 -4,-6 0.0037 1 -2.0 MINOR ENSMUSG00000028645 Slc2a1 ENSMUST00000208090 ENSMUSP00000146958 TRANSLATION protein_coding stop - 5 116.0 0.0 2.528 0.0 108.4 7.0 -4,-7 0.0021 1 -2.0 MINOR ENSMUSG00000028645 Slc2a1 ENSMUST00000144329 ENSMUSP00000134126 TRANSLATION protein_coding stop - 3 123.0 0.0 2.75 0.0 117.4 4.0 -4,-7 0.0024 1 -2.0 MINOR ENSMUSG00000028645 Slc2a1 ENSMUST00000030398 ENSMUSP00000030398 TRANSLATION protein_coding - CCDS18569.1 1 492.0 0.0 10.358 31.7 542.8 17.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000073794 I0C0044D17Rik ENSMUST00000097964 ENSMUSP00000095577 TRANSLATION protein_coding - - 1 169.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5818 - 0.0 PRINCIPAL:1 ENSMUSG00000073794 I0C0044D17Rik ENSMUST00000168045 ENSMUSP00000130110 TRANSLATION protein_coding - - - 169.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5818 - 0.0 PRINCIPAL:1 ENSMUSG00000028245 Nsmaf ENSMUST00000156283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028245 Nsmaf ENSMUST00000124344 ENSMUSP00000120980 TRANSLATION protein_coding stop - 5 132.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000028245 Nsmaf ENSMUST00000149015 - NO_TRANSLATION retained_intron ENSMUSG00000028245 Nsmaf ENSMUST00000156078 - NO_TRANSLATION retained_intron ENSMUSG00000028245 Nsmaf ENSMUST00000143566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028245 Nsmaf ENSMUST00000145399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028245 Nsmaf ENSMUST00000124656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028245 Nsmaf ENSMUST00000029910 ENSMUSP00000029910 TRANSLATION protein_coding - CCDS17952.1 1 920.0 0.0 10.34875 16.5 497.3 0.0 -4,-7 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000028245 Nsmaf ENSMUST00000156715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028245 Nsmaf ENSMUST00000143704 - NO_TRANSLATION retained_intron ENSMUSG00000028245 Nsmaf ENSMUST00000143983 - NO_TRANSLATION retained_intron ENSMUSG00000028702 Rad54l ENSMUST00000138320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028702 Rad54l ENSMUST00000139147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028702 Rad54l ENSMUST00000102704 ENSMUSP00000099765 TRANSLATION protein_coding - CCDS18504.1 1 747.0 11.0 13.05 32.7 249.0 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000028702 Rad54l ENSMUST00000143089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028702 Rad54l ENSMUST00000152741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028702 Rad54l ENSMUST00000102705 ENSMUSP00000099766 TRANSLATION protein_coding - CCDS18504.1 1 747.0 11.0 13.05 32.7 249.0 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000064141 Zfp69 ENSMUST00000130702 ENSMUSP00000133312 TRANSLATION protein_coding stop - 3 110.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000064141 Zfp69 ENSMUST00000106280 ENSMUSP00000101887 TRANSLATION protein_coding - CCDS18597.2 5 587.0 36.0 1.566 0.0 234.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000064141 Zfp69 ENSMUST00000132839 - NO_TRANSLATION retained_intron ENSMUSG00000064141 Zfp69 ENSMUST00000106281 ENSMUSP00000101888 TRANSLATION protein_coding - CCDS18597.2 1 587.0 36.0 1.566 0.0 234.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000040860 Crocc ENSMUST00000151455 - NO_TRANSLATION retained_intron ENSMUSG00000040860 Crocc ENSMUST00000126863 - NO_TRANSLATION retained_intron ENSMUSG00000040860 Crocc ENSMUST00000040222 ENSMUSP00000037679 TRANSLATION protein_coding - CCDS51346.1 5 1845.0 0.0 12.1 0.1 146.5 0.0 -4,-5 0.2364 51 8.286 MINOR ENSMUSG00000040860 Crocc ENSMUST00000097816 ENSMUSP00000095425 TRANSLATION protein_coding - CCDS51346.1 5 1845.0 0.0 12.1 0.1 146.5 0.0 -4,-5 0.2364 51 8.286 MINOR ENSMUSG00000040860 Crocc ENSMUST00000168157 ENSMUSP00000126543 TRANSLATION protein_coding - CCDS51346.1 1 1845.0 0.0 12.1 0.1 146.5 0.0 -4,-5 0.2364 51 8.286 MINOR ENSMUSG00000040860 Crocc ENSMUST00000122846 - NO_TRANSLATION retained_intron ENSMUSG00000040860 Crocc ENSMUST00000124286 - NO_TRANSLATION retained_intron ENSMUSG00000040860 Crocc ENSMUST00000137721 - NO_TRANSLATION retained_intron ENSMUSG00000040860 Crocc ENSMUST00000144196 ENSMUSP00000120555 TRANSLATION protein_coding stop - 5 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040860 Crocc ENSMUST00000102491 ENSMUSP00000099549 TRANSLATION protein_coding - CCDS18861.1 1 2009.0 0.0 12.1 0.1 208.4 0.0 -4,-6 1.0 53 12.0 PRINCIPAL:1 ENSMUSG00000040860 Crocc ENSMUST00000126973 - NO_TRANSLATION retained_intron ENSMUSG00000086147 Zfp989 ENSMUST00000146688 ENSMUSP00000135720 TRANSLATION protein_coding - - 1 661.0 60.0 1.0 0.0 389.6 0.0 -4,-7 0.8512 - 18.0 PRINCIPAL:1 ENSMUSG00000086147 Zfp989 ENSMUST00000132166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070803 Cited4 ENSMUST00000094814 ENSMUSP00000092408 TRANSLATION protein_coding - CCDS18592.1 - 182.0 0.0 0.2 5.3 67.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000000409 Lck ENSMUST00000123640 - NO_TRANSLATION retained_intron ENSMUSG00000000409 Lck ENSMUST00000132030 - NO_TRANSLATION retained_intron ENSMUSG00000000409 Lck ENSMUST00000067240 ENSMUSP00000066209 TRANSLATION protein_coding - CCDS18697.1 1 509.0 17.0 10.9 17.8 451.6 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000000409 Lck ENSMUST00000134336 ENSMUSP00000119263 TRANSLATION protein_coding stop - 2 92.0 0.0 1.9 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000409 Lck ENSMUST00000102596 ENSMUSP00000099656 TRANSLATION protein_coding - CCDS18697.1 1 509.0 17.0 10.9 17.8 451.6 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000000409 Lck ENSMUST00000139957 - NO_TRANSLATION retained_intron ENSMUSG00000000409 Lck ENSMUST00000127943 - NO_TRANSLATION retained_intron ENSMUSG00000000409 Lck ENSMUST00000167288 ENSMUSP00000125777 TRANSLATION protein_coding - CCDS51306.1 5 520.0 17.0 10.9 0.1 451.6 0.0 -4,-5 0.172 13 18.0 MINOR ENSMUSG00000028902 Sf3a3 ENSMUST00000030734 ENSMUSP00000030734 TRANSLATION protein_coding - CCDS38875.1 1 501.0 2.0 13.6 34.2 412.3 0.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000028902 Sf3a3 ENSMUST00000154712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028902 Sf3a3 ENSMUST00000151049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028654 Mycl ENSMUST00000135925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028654 Mycl ENSMUST00000144998 ENSMUSP00000117232 TRANSLATION protein_coding stop - 3 72.0 0.0 0.0 0.0 55.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028654 Mycl ENSMUST00000030407 ENSMUSP00000030407 TRANSLATION protein_coding - CCDS18606.1 1 368.0 0.0 0.8 8.2 180.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028654 Mycl ENSMUST00000106252 ENSMUSP00000101859 TRANSLATION protein_coding - CCDS18606.1 1 368.0 0.0 0.8 8.2 180.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000028654 Mycl ENSMUST00000147259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061859 Patj ENSMUST00000107030 ENSMUSP00000102645 TRANSLATION protein_coding - - 1 598.0 0.0 8.905 0.0 226.4 0.0 -4,-5 0.0 13 0.0 MINOR ENSMUSG00000061859 Patj ENSMUST00000141965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061859 Patj ENSMUST00000107029 ENSMUSP00000102644 TRANSLATION protein_coding - - 1 1261.0 0.0 16.505 0.0 317.4 0.0 -4,-5 0.015 19 0.0 MINOR ENSMUSG00000061859 Patj ENSMUST00000030290 ENSMUSP00000030290 TRANSLATION protein_coding - CCDS18377.1 1 582.0 0.0 9.859 0.0 221.6 0.0 -4,-5 0.0168 9 0.0 MINOR ENSMUSG00000061859 Patj ENSMUST00000136675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061859 Patj ENSMUST00000107034 ENSMUSP00000102649 TRANSLATION protein_coding - - 5 1531.0 0.0 18.658 0.0 395.0 0.0 -4,-5 0.0237 26 0.2 MINOR ENSMUSG00000061859 Patj ENSMUST00000141796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061859 Patj ENSMUST00000238306 ENSMUSP00000158719 TRANSLATION protein_coding - - - 1858.0 0.0 25.108 0.0 570.9 0.0 -4,-5 0.3765 32 8.0 ALTERNATIVE:2 ENSMUSG00000061859 Patj ENSMUST00000135606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061859 Patj ENSMUST00000102792 ENSMUSP00000099854 TRANSLATION protein_coding - CCDS18376.1 1 612.0 0.0 9.659 0.1 221.8 0.0 -4,-5 0.0168 9 0.0 MINOR ENSMUSG00000061859 Patj ENSMUST00000142103 ENSMUSP00000116021 TRANSLATION protein_coding start - 1 454.0 0.0 3.789 0.0 65.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000061859 Patj ENSMUST00000041284 ENSMUSP00000049176 TRANSLATION protein_coding - CCDS18375.1 1 1834.0 0.0 25.108 0.1 570.9 0.0 -4,-5 1.0 32 8.0 PRINCIPAL:2 ENSMUSG00000061859 Patj ENSMUST00000107033 ENSMUSP00000102648 TRANSLATION protein_coding - - 1 902.0 0.0 12.633 0.0 284.9 0.0 -4,-5 0.002 18 0.0 MINOR ENSMUSG00000061859 Patj ENSMUST00000134901 ENSMUSP00000115936 TRANSLATION protein_coding start - 5 173.0 0.0 3.13 0.0 58.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028992 Nmnat1 ENSMUST00000030845 ENSMUSP00000030845 TRANSLATION protein_coding - CCDS18960.1 1 285.0 20.0 3.0 3.5 105.1 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000028992 Nmnat1 ENSMUST00000105693 ENSMUSP00000101318 TRANSLATION protein_coding - CCDS18960.1 1 285.0 20.0 3.0 3.5 105.1 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000028992 Nmnat1 ENSMUST00000119921 ENSMUSP00000113156 TRANSLATION protein_coding - - 1 149.0 13.0 2.0 1.0 71.4 0.0 -4,-5 0.0388 2 9.312 MINOR ENSMUSG00000028992 Nmnat1 ENSMUST00000126896 ENSMUSP00000116049 TRANSLATION protein_coding stop - 2 37.0 5.0 1.0 0.0 28.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057751 Megf6 ENSMUST00000183595 - NO_TRANSLATION retained_intron ENSMUSG00000057751 Megf6 ENSMUST00000152159 ENSMUSP00000121641 TRANSLATION protein_coding stop - 5 1192.0 40.0 20.218 0.0 396.5 0.0 3,-2 0.0204 4 -2.0 MINOR ENSMUSG00000057751 Megf6 ENSMUST00000127088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057751 Megf6 ENSMUST00000138945 - NO_TRANSLATION retained_intron ENSMUSG00000057751 Megf6 ENSMUST00000142110 - NO_TRANSLATION retained_intron ENSMUSG00000057751 Megf6 ENSMUST00000128700 ENSMUSP00000117277 TRANSLATION protein_coding start/stop - 5 332.0 13.0 6.8 0.0 130.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057751 Megf6 ENSMUST00000030897 ENSMUSP00000030897 TRANSLATION protein_coding - CCDS51398.1 5 1572.0 45.0 25.403 0.1 517.1 0.0 3,-2 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000076436 Oxct2a ENSMUST00000102640 ENSMUSP00000099700 TRANSLATION protein_coding - CCDS18617.1 - 520.0 16.0 1.0 0.8 383.3 0.0 3,4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033423 Eri3 ENSMUST00000037127 ENSMUSP00000042796 TRANSLATION protein_coding - CCDS18535.1 1 337.0 11.0 5.83 11.0 144.1 0.0 -3,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000033423 Eri3 ENSMUST00000146384 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033423 Eri3 ENSMUST00000134453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033423 Eri3 ENSMUST00000134379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033423 Eri3 ENSMUST00000144373 ENSMUSP00000117034 TRANSLATION protein_coding stop - 2 163.0 6.0 1.58 0.0 45.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000033423 Eri3 ENSMUST00000125312 ENSMUSP00000115520 TRANSLATION protein_coding start - 1 125.0 4.0 2.83 0.0 61.8 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000028329 Xpa ENSMUST00000058232 ENSMUSP00000050453 TRANSLATION protein_coding - - 1 279.0 4.0 3.25 0.0 153.9 0.0 -4,-5 0.044 - 15.202 MINOR ENSMUSG00000028329 Xpa ENSMUST00000142380 ENSMUSP00000121850 TRANSLATION protein_coding stop - 1 273.0 4.0 3.25 0.0 153.9 0.0 -4,-5 0.1228 - -2.0 MINOR ENSMUSG00000028329 Xpa ENSMUST00000132358 ENSMUSP00000138512 TRANSLATION nonsense_mediated_decay start - 5 134.0 2.0 2.75 0.0 134.9 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000028329 Xpa ENSMUST00000030013 ENSMUSP00000030013 TRANSLATION protein_coding - CCDS18146.1 1 272.0 4.0 3.65 4.5 153.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000028329 Xpa ENSMUST00000141318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028329 Xpa ENSMUST00000130051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028339 Col15a1 ENSMUST00000140094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028339 Col15a1 ENSMUST00000146967 ENSMUSP00000118637 TRANSLATION protein_coding stop - 5 145.0 0.0 2.55634 0.0 36.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028339 Col15a1 ENSMUST00000102917 ENSMUSP00000099981 TRANSLATION protein_coding - CCDS18159.1 1 1367.0 0.0 7.30634 0.0 473.0 0.0 1,-4 1.0 16 8.0 PRINCIPAL:2 ENSMUSG00000028339 Col15a1 ENSMUST00000140413 ENSMUSP00000119292 TRANSLATION protein_coding stop - 5 121.0 0.0 0.966 0.0 36.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028339 Col15a1 ENSMUST00000107731 ENSMUSP00000103359 TRANSLATION protein_coding - - 1 533.0 0.0 7.30634 0.0 370.3 0.0 -4,-5 0.0433 11 6.4 MINOR ENSMUSG00000028339 Col15a1 ENSMUST00000124105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028339 Col15a1 ENSMUST00000148103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028339 Col15a1 ENSMUST00000107730 ENSMUSP00000103358 TRANSLATION protein_coding - - 1 278.0 0.0 4.75 0.0 344.8 0.0 -4,-6 0.0 10 0.888 MINOR ENSMUSG00000028339 Col15a1 ENSMUST00000082303 ENSMUSP00000080921 TRANSLATION protein_coding - - 2 1345.0 0.0 7.30634 0.0 472.5 0.0 1,-4 0.3365 16 8.0 ALTERNATIVE:2 ENSMUSG00000028717 Tal1 ENSMUST00000162489 ENSMUSP00000124983 TRANSLATION protein_coding - CCDS18486.1 1 329.0 0.0 1.12 7.3 57.7 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000028717 Tal1 ENSMUST00000161601 ENSMUSP00000125202 TRANSLATION protein_coding - CCDS18486.1 1 329.0 0.0 1.12 7.3 57.7 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000028717 Tal1 ENSMUST00000030489 ENSMUSP00000030489 TRANSLATION protein_coding - CCDS18486.1 1 329.0 0.0 1.12 7.3 57.7 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000028717 Tal1 ENSMUST00000136946 ENSMUSP00000121437 TRANSLATION protein_coding stop - 3 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055401 Fbxo6 ENSMUST00000105706 ENSMUSP00000101331 TRANSLATION protein_coding - CCDS18933.1 1 295.0 2.0 6.58 0.0 293.5 0.0 -4,-6 1.0 12 14.001 PRINCIPAL:1 ENSMUSG00000055401 Fbxo6 ENSMUST00000132083 ENSMUSP00000120431 TRANSLATION protein_coding stop - 3 64.0 0.0 1.0 0.0 41.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055401 Fbxo6 ENSMUST00000168503 ENSMUSP00000130188 TRANSLATION protein_coding - CCDS18933.1 2 295.0 2.0 6.58 0.0 293.5 0.0 -4,-6 1.0 12 14.001 PRINCIPAL:1 ENSMUSG00000055401 Fbxo6 ENSMUST00000126615 ENSMUSP00000120801 TRANSLATION protein_coding stop - 2 237.0 3.0 5.83 0.0 276.7 0.0 -4,-6 0.0102 10 -2.0 MINOR ENSMUSG00000055401 Fbxo6 ENSMUST00000152098 ENSMUSP00000121379 TRANSLATION protein_coding stop - 2 265.0 2.0 6.58 2.2 293.5 0.0 -4,-6 0.7464 10 -2.0 MINOR ENSMUSG00000055401 Fbxo6 ENSMUST00000134261 ENSMUSP00000123132 TRANSLATION protein_coding stop - 5 228.0 2.0 5.5 0.0 254.5 0.0 -4,-6 0.0077 9 -2.0 MINOR ENSMUSG00000055401 Fbxo6 ENSMUST00000056965 ENSMUSP00000062348 TRANSLATION protein_coding - CCDS18933.1 1 295.0 2.0 6.58 0.0 293.5 0.0 -4,-6 1.0 12 14.001 PRINCIPAL:1 ENSMUSG00000055401 Fbxo6 ENSMUST00000030858 ENSMUSP00000030858 TRANSLATION protein_coding - CCDS18933.1 1 295.0 2.0 6.58 0.0 293.5 0.0 -4,-6 1.0 12 14.001 PRINCIPAL:1 ENSMUSG00000028899 Taf12 ENSMUST00000030731 ENSMUSP00000030731 TRANSLATION protein_coding - CCDS18721.1 1 161.0 0.0 2.35 26.7 122.9 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000028899 Taf12 ENSMUST00000105963 ENSMUSP00000101583 TRANSLATION protein_coding - - 5 213.0 0.0 2.35 18.0 122.9 0.0 -4,-5 0.7221 4 14.644 MINOR ENSMUSG00000028899 Taf12 ENSMUST00000124365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066058 Cldn19 ENSMUST00000084309 ENSMUSP00000081334 TRANSLATION protein_coding - CCDS18577.1 1 224.0 0.0 3.35 17.3 146.3 3.0 -1,-4 0.8842 1 14.256 MINOR ENSMUSG00000066058 Cldn19 ENSMUST00000094823 ENSMUSP00000092418 TRANSLATION protein_coding - CCDS18578.1 1 211.0 0.0 3.35 29.9 146.3 3.0 -1,-4 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000028373 Astn2 ENSMUST00000084496 ENSMUSP00000081540 TRANSLATION protein_coding - CCDS18268.1 5 1300.0 0.0 9.83 0.3 69.9 1.0 -1,1 0.6104 18 6.0 ALTERNATIVE:2 ENSMUSG00000028373 Astn2 ENSMUST00000068214 ENSMUSP00000065786 TRANSLATION protein_coding - CCDS18269.1 5 1352.0 0.0 9.83 1.2 69.9 1.0 -1,1 1.0 19 7.0 PRINCIPAL:2 ENSMUSG00000032998 Foxj3 ENSMUST00000133097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032998 Foxj3 ENSMUST00000131413 - NO_TRANSLATION retained_intron ENSMUSG00000032998 Foxj3 ENSMUST00000138845 ENSMUSP00000124806 TRANSLATION protein_coding - - 1 155.0 0.0 2.25 0.0 119.8 0.0 -4,-6 0.0026 2 4.998 MINOR ENSMUSG00000032998 Foxj3 ENSMUST00000137560 ENSMUSP00000123826 TRANSLATION protein_coding stop - 2 71.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032998 Foxj3 ENSMUST00000162267 ENSMUSP00000123815 TRANSLATION protein_coding - - 1 155.0 0.0 2.25 0.0 119.8 0.0 -4,-6 0.0026 2 4.998 MINOR ENSMUSG00000032998 Foxj3 ENSMUST00000161196 - NO_TRANSLATION retained_intron ENSMUSG00000032998 Foxj3 ENSMUST00000160219 ENSMUSP00000123923 TRANSLATION protein_coding stop - 3 104.0 0.0 1.0 0.0 34.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032998 Foxj3 ENSMUST00000176012 ENSMUSP00000135430 TRANSLATION protein_coding stop - 3 62.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032998 Foxj3 ENSMUST00000106310 ENSMUSP00000101917 TRANSLATION protein_coding - CCDS71462.1 1 589.0 0.0 2.7 7.5 132.0 0.0 -4,-6 0.8389 4 10.01 ALTERNATIVE:1 ENSMUSG00000032998 Foxj3 ENSMUST00000044564 ENSMUSP00000035746 TRANSLATION protein_coding - CCDS18585.1 1 623.0 0.0 2.7 10.7 132.0 0.0 -4,-6 1.0 4 11.0 PRINCIPAL:4 ENSMUSG00000034785 Dio1 ENSMUST00000126291 ENSMUSP00000114807 TRANSLATION protein_coding stop - 5 61.0 0.0 1.5 0.0 97.4 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000034785 Dio1 ENSMUST00000129138 ENSMUSP00000118335 TRANSLATION protein_coding stop - 5 208.0 0.0 3.6 0.0 217.6 0.0 4,-1 0.002 3 -2.0 MINOR ENSMUSG00000034785 Dio1 ENSMUST00000145332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034785 Dio1 ENSMUST00000150974 ENSMUSP00000117751 TRANSLATION nonsense_mediated_decay - - 5 125.0 0.0 1.76 0.0 115.2 0.0 4,-1 0.0426 1 -2.0 MINOR ENSMUSG00000034785 Dio1 ENSMUST00000106748 ENSMUSP00000102359 TRANSLATION protein_coding - - 5 113.0 0.0 1.1 1.0 84.4 0.0 4,-1 0.0045 1 0.0 MINOR ENSMUSG00000034785 Dio1 ENSMUST00000134366 ENSMUSP00000119199 TRANSLATION nonsense_mediated_decay - - 5 82.0 0.0 0.5 0.0 32.9 0.0 4,-1 0.0025 - -2.0 MINOR ENSMUSG00000034785 Dio1 ENSMUST00000082426 ENSMUSP00000081007 TRANSLATION protein_coding - CCDS18436.1 1 257.0 0.0 5.26 0.4 343.5 0.0 4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000034785 Dio1 ENSMUST00000147709 ENSMUSP00000121450 TRANSLATION nonsense_mediated_decay - - 5 82.0 0.0 0.5 0.0 32.9 0.0 4,-1 0.0025 - -2.0 MINOR ENSMUSG00000028293 Slc35a1 ENSMUST00000124456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028293 Slc35a1 ENSMUST00000151549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028293 Slc35a1 ENSMUST00000029970 ENSMUSP00000029970 TRANSLATION protein_coding - CCDS18030.1 1 336.0 0.0 7.3 26.0 407.4 9.0 -1,-4 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028293 Slc35a1 ENSMUST00000154020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028293 Slc35a1 ENSMUST00000126033 ENSMUSP00000119125 TRANSLATION protein_coding start/stop - 3 250.0 0.0 3.55 0.0 280.5 5.0 -4,-7 0.0041 4 -2.0 MINOR ENSMUSG00000058498 Rnf207 ENSMUST00000142427 - NO_TRANSLATION retained_intron ENSMUSG00000058498 Rnf207 ENSMUST00000134269 - NO_TRANSLATION retained_intron ENSMUSG00000058498 Rnf207 ENSMUST00000130008 ENSMUSP00000127196 TRANSLATION nonsense_mediated_decay - - 1 71.0 8.0 0.665 0.0 29.3 0.0 -2,-4 0.0 - -2.0 MINOR ENSMUSG00000058498 Rnf207 ENSMUST00000145311 - NO_TRANSLATION retained_intron ENSMUSG00000058498 Rnf207 ENSMUST00000146496 - NO_TRANSLATION retained_intron ENSMUSG00000058498 Rnf207 ENSMUST00000135837 - NO_TRANSLATION retained_intron ENSMUSG00000058498 Rnf207 ENSMUST00000108688 - NO_TRANSLATION retained_intron ENSMUSG00000058498 Rnf207 ENSMUST00000076183 ENSMUSP00000075540 TRANSLATION protein_coding - CCDS51393.1 1 635.0 20.0 3.24 0.1 93.1 0.0 -2,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000058498 Rnf207 ENSMUST00000123133 - NO_TRANSLATION retained_intron ENSMUSG00000058498 Rnf207 ENSMUST00000127565 - NO_TRANSLATION retained_intron ENSMUSG00000058498 Rnf207 ENSMUST00000143968 - NO_TRANSLATION retained_intron ENSMUSG00000058498 Rnf207 ENSMUST00000170820 ENSMUSP00000129400 TRANSLATION protein_coding stop - 5 515.0 20.0 3.24 0.0 65.1 0.0 -2,-4 0.0432 - -2.0 MINOR ENSMUSG00000045751 Mms22l ENSMUST00000139050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045751 Mms22l ENSMUST00000154349 - NO_TRANSLATION retained_intron ENSMUSG00000045751 Mms22l ENSMUST00000173079 - NO_TRANSLATION retained_intron ENSMUSG00000045751 Mms22l ENSMUST00000172622 ENSMUSP00000133658 TRANSLATION protein_coding start/stop - 5 323.0 0.0 0.0 0.0 347.7 0.0 -4,-7 0.0009 - -2.0 MINOR ENSMUSG00000045751 Mms22l ENSMUST00000154496 ENSMUSP00000134140 TRANSLATION protein_coding start - 2 101.0 0.0 0.0 0.0 127.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000045751 Mms22l ENSMUST00000131282 ENSMUSP00000133800 TRANSLATION nonsense_mediated_decay start - 5 734.0 0.0 0.0 0.0 982.2 0.0 -4,-7 0.0563 3 -2.0 MINOR ENSMUSG00000045751 Mms22l ENSMUST00000138567 ENSMUSP00000134736 TRANSLATION protein_coding - - 2 202.0 0.0 0.0 0.0 286.8 0.0 -4,-5 0.0008 1 0.0 MINOR ENSMUSG00000045751 Mms22l ENSMUST00000108222 ENSMUSP00000103857 TRANSLATION protein_coding - CCDS18006.2 5 1238.0 0.0 0.0 6.3 1713.3 0.0 -4,-5 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000045751 Mms22l ENSMUST00000123984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045751 Mms22l ENSMUST00000050446 ENSMUSP00000057715 TRANSLATION protein_coding - - 1 1198.0 0.0 0.0 1.0 1238.1 0.0 -4,-5 0.1399 6 0.0 MINOR ENSMUSG00000028893 Sesn2 ENSMUST00000030724 ENSMUSP00000030724 TRANSLATION protein_coding - CCDS18726.1 1 480.0 0.0 4.25 14.5 656.4 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000028521 Slc35d1 ENSMUST00000183432 ENSMUSP00000138926 TRANSLATION nonsense_mediated_decay start - 5 211.0 0.0 4.63 0.0 35.8 10.0 -4,-7 0.0103 1 -2.0 MINOR ENSMUSG00000028521 Slc35d1 ENSMUST00000154845 - NO_TRANSLATION retained_intron ENSMUSG00000028521 Slc35d1 ENSMUST00000150285 ENSMUSP00000122124 TRANSLATION protein_coding - CCDS18409.1 1 306.0 0.0 6.55 0.0 41.0 14.0 -4,-2 0.4689 1 7.314 PRINCIPAL:1 ENSMUSG00000028521 Slc35d1 ENSMUST00000094947 - NO_TRANSLATION retained_intron ENSMUSG00000028521 Slc35d1 ENSMUST00000036195 ENSMUSP00000037617 TRANSLATION protein_coding start - 1 334.0 0.0 8.05 0.0 57.0 16.0 -4,-7 0.1231 1 -2.0 MINOR ENSMUSG00000036856 Wnt4 ENSMUST00000045747 ENSMUSP00000036580 TRANSLATION protein_coding - CCDS18815.1 1 351.0 0.0 4.0 25.1 421.2 0.0 0,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000028919 Arhgef19 ENSMUST00000125392 ENSMUSP00000118740 TRANSLATION protein_coding stop - 3 153.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028919 Arhgef19 ENSMUST00000138096 ENSMUSP00000116274 TRANSLATION protein_coding stop - 5 51.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028919 Arhgef19 ENSMUST00000006618 ENSMUSP00000006618 TRANSLATION protein_coding - CCDS18868.1 1 802.0 0.0 5.668 5.3 147.7 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000028919 Arhgef19 ENSMUST00000184162 - NO_TRANSLATION retained_intron ENSMUSG00000028919 Arhgef19 ENSMUST00000147903 ENSMUSP00000120088 TRANSLATION protein_coding start/stop - 3 221.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000028919 Arhgef19 ENSMUST00000141834 ENSMUSP00000115856 TRANSLATION protein_coding stop - 2 69.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028919 Arhgef19 ENSMUST00000140536 - NO_TRANSLATION retained_intron ENSMUSG00000028919 Arhgef19 ENSMUST00000135623 ENSMUSP00000119846 TRANSLATION protein_coding stop - 5 251.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000042616 Oscp1 ENSMUST00000129968 - NO_TRANSLATION retained_intron ENSMUSG00000042616 Oscp1 ENSMUST00000153138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042616 Oscp1 ENSMUST00000035497 ENSMUSP00000045241 TRANSLATION protein_coding - CCDS38879.1 1 379.0 0.0 6.05 29.4 268.6 0.0 -4,-5 1.0 10 15.946 PRINCIPAL:1 ENSMUSG00000042616 Oscp1 ENSMUST00000143712 ENSMUSP00000152196 TRANSLATION protein_coding - - 1 389.0 0.0 6.0764 17.9 260.8 0.0 -4,-5 0.7039 9 13.912 MINOR ENSMUSG00000028591 Pramel13 ENSMUST00000123854 ENSMUSP00000119614 TRANSLATION protein_coding - CCDS18905.1 2 463.0 0.0 2.2 0.0 0.0 0.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028591 Pramel13 ENSMUST00000030326 ENSMUSP00000030326 TRANSLATION protein_coding - CCDS18905.1 1 463.0 0.0 2.2 0.0 0.0 0.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028782 Adgrb2 ENSMUST00000149282 - NO_TRANSLATION retained_intron ENSMUSG00000028782 Adgrb2 ENSMUST00000106017 ENSMUSP00000101638 TRANSLATION protein_coding - CCDS51309.1 1 1549.0 6.0 13.0925 0.0 559.4 12.0 3,-2 0.4787 16 17.364 MINOR ENSMUSG00000028782 Adgrb2 ENSMUST00000136416 - NO_TRANSLATION retained_intron ENSMUSG00000028782 Adgrb2 ENSMUST00000136787 - NO_TRANSLATION retained_intron ENSMUSG00000028782 Adgrb2 ENSMUST00000030571 ENSMUSP00000030571 TRANSLATION protein_coding - - 5 1577.0 6.0 13.32 0.0 560.4 12.0 3,-2 0.2947 16 17.88 MINOR ENSMUSG00000028782 Adgrb2 ENSMUST00000097868 ENSMUSP00000095480 TRANSLATION protein_coding - - 5 1544.0 6.0 13.28 0.0 562.4 12.0 3,-2 0.3876 16 17.922 MINOR ENSMUSG00000028782 Adgrb2 ENSMUST00000166118 - NO_TRANSLATION retained_intron ENSMUSG00000028782 Adgrb2 ENSMUST00000163625 - NO_TRANSLATION retained_intron ENSMUSG00000028782 Adgrb2 ENSMUST00000106018 ENSMUSP00000101639 TRANSLATION protein_coding - - 5 1489.0 6.0 12.78 0.0 516.8 12.0 3,-2 0.1675 15 14.184 MINOR ENSMUSG00000028782 Adgrb2 ENSMUST00000106015 ENSMUSP00000101636 TRANSLATION protein_coding - CCDS80164.1 1 1561.0 6.0 13.32 4.0 560.4 12.0 3,-2 1.0 16 19.88 PRINCIPAL:1 ENSMUSG00000028782 Adgrb2 ENSMUST00000121049 ENSMUSP00000112869 TRANSLATION protein_coding - CCDS57300.1 1 1506.0 6.0 12.82 2.9 514.8 12.0 3,-2 0.5866 15 15.408 MINOR ENSMUSG00000028782 Adgrb2 ENSMUST00000120204 ENSMUSP00000112524 TRANSLATION protein_coding - CCDS71478.1 1 1473.0 6.0 12.64 3.9 520.0 12.0 3,-2 0.5973 15 16.028 MINOR ENSMUSG00000028782 Adgrb2 ENSMUST00000106012 - NO_TRANSLATION retained_intron ENSMUSG00000078689 Mup6 ENSMUST00000107520 ENSMUSP00000103144 TRANSLATION protein_coding - CCDS38773.1 5 179.0 0.0 4.88 0.0 114.9 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078689 Mup6 ENSMUST00000107517 ENSMUSP00000103141 TRANSLATION protein_coding - CCDS38773.1 5 179.0 0.0 4.88 0.0 114.9 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078689 Mup6 ENSMUST00000107521 ENSMUSP00000103145 TRANSLATION protein_coding - - 3 171.0 0.0 4.155 0.0 114.9 0.0 -4,-5 0.0209 - 10.548 MINOR ENSMUSG00000034185 Tmem275 ENSMUST00000132221 ENSMUSP00000146242 TRANSLATION protein_coding - - 1 177.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5691 1 0.0 PRINCIPAL:1 ENSMUSG00000095675 Ccl21b ENSMUST00000178864 ENSMUSP00000137149 TRANSLATION protein_coding - CCDS51145.1 1 133.0 0.0 2.3 6.9 83.3 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000037366 Pafah2 ENSMUST00000140888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037366 Pafah2 ENSMUST00000132658 ENSMUSP00000117607 TRANSLATION protein_coding stop - 2 103.0 0.0 1.68 0.0 112.5 0.0 -4,-5 0.0003 5 -2.0 MINOR ENSMUSG00000037366 Pafah2 ENSMUST00000145626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037366 Pafah2 ENSMUST00000105869 ENSMUSP00000101495 TRANSLATION protein_coding - CCDS18771.1 1 390.0 7.0 6.664 16.3 512.4 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000037366 Pafah2 ENSMUST00000131337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037366 Pafah2 ENSMUST00000148863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037366 Pafah2 ENSMUST00000105870 ENSMUSP00000101496 TRANSLATION protein_coding - CCDS71490.1 1 415.0 7.0 6.664 0.0 512.4 0.0 -4,-5 0.16 13 18.0 MINOR ENSMUSG00000051276 Actrt2 ENSMUST00000060062 ENSMUSP00000050377 TRANSLATION protein_coding - CCDS19014.1 - 377.0 35.0 1.0 18.7 376.2 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000028484 Psip1 ENSMUST00000126706 ENSMUSP00000120799 TRANSLATION protein_coding start - 2 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028484 Psip1 ENSMUST00000130626 ENSMUSP00000121950 TRANSLATION protein_coding stop - 2 90.0 0.0 2.5 0.0 58.1 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000028484 Psip1 ENSMUST00000107215 ENSMUSP00000102833 TRANSLATION protein_coding - CCDS71412.1 1 331.0 0.0 2.5 11.4 58.1 0.0 -4,-5 0.7037 13 3.498 MINOR ENSMUSG00000028484 Psip1 ENSMUST00000152382 - NO_TRANSLATION retained_intron ENSMUSG00000028484 Psip1 ENSMUST00000107214 ENSMUSP00000102832 TRANSLATION protein_coding - CCDS84749.1 5 327.0 0.0 2.5 9.2 58.1 0.0 -4,-5 0.6179 13 2.862 MINOR ENSMUSG00000028484 Psip1 ENSMUST00000144349 - NO_TRANSLATION retained_intron ENSMUSG00000028484 Psip1 ENSMUST00000030207 ENSMUSP00000030207 TRANSLATION protein_coding - CCDS18299.1 1 528.0 0.0 5.25 11.4 160.4 0.0 -4,-5 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000094066 Spata31f1b ENSMUST00000180201 ENSMUSP00000136864 TRANSLATION protein_coding - - 5 1308.0 0.0 0.0 0.0 122.8 0.0 -4,-5 0.9129 - 6.0 PRINCIPAL:1 ENSMUSG00000110404 Rnf223 ENSMUST00000209248 ENSMUSP00000147415 TRANSLATION protein_coding - CCDS84838.1 - 255.0 8.0 0.0 4.3 35.8 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073705 Cenps ENSMUST00000030813 ENSMUSP00000030813 TRANSLATION protein_coding - CCDS18954.1 1 142.0 0.0 3.99 0.0 114.5 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000073705 Cenps ENSMUST00000105695 ENSMUSP00000101320 TRANSLATION protein_coding - - 1 76.0 0.0 2.16 0.0 69.7 0.0 -4,-5 0.0006 1 5.652 MINOR ENSMUSG00000073705 Cenps ENSMUST00000105696 ENSMUSP00000101321 TRANSLATION nonsense_mediated_decay - - 5 102.0 0.0 2.36 0.0 69.7 0.0 -4,-5 0.0006 1 -2.0 MINOR ENSMUSG00000073705 Cenps ENSMUST00000176124 ENSMUSP00000134756 TRANSLATION protein_coding stop - 3 77.0 0.0 1.83 0.0 41.7 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000073705 Cenps ENSMUST00000150150 ENSMUSP00000121878 TRANSLATION protein_coding stop - 3 58.0 0.0 1.83 0.0 41.7 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000073705 Cenps ENSMUST00000132672 - NO_TRANSLATION retained_intron ENSMUSG00000073705 Cenps ENSMUST00000177408 ENSMUSP00000135536 TRANSLATION protein_coding - - 2 74.0 0.0 1.2525 0.0 36.1 0.0 -4,-5 0.0 - 1.818 MINOR ENSMUSG00000028546 Elavl4 ENSMUST00000106600 ENSMUSP00000102210 TRANSLATION protein_coding - - 5 383.0 0.0 5.9 0.0 217.4 0.0 -4,-5 0.0491 6 8.0 MINOR ENSMUSG00000028546 Elavl4 ENSMUST00000106603 ENSMUSP00000102214 TRANSLATION protein_coding - CCDS51262.1 1 356.0 0.0 5.8 2.0 217.4 0.0 -4,-5 0.3503 6 8.046 MINOR ENSMUSG00000028546 Elavl4 ENSMUST00000144554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028546 Elavl4 ENSMUST00000153200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028546 Elavl4 ENSMUST00000106597 ENSMUSP00000102207 TRANSLATION protein_coding - CCDS18471.1 1 385.0 0.0 5.9 13.9 217.4 0.0 -4,-5 0.9685 7 11.128 PRINCIPAL:3 ENSMUSG00000028546 Elavl4 ENSMUST00000138972 ENSMUSP00000123014 TRANSLATION protein_coding stop - 5 137.0 0.0 2.8 0.0 74.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028546 Elavl4 ENSMUST00000102722 ENSMUSP00000099783 TRANSLATION protein_coding - CCDS51261.1 1 371.0 0.0 5.9 17.5 217.4 0.0 -4,-5 1.0 6 12.0 ALTERNATIVE:1 ENSMUSG00000028546 Elavl4 ENSMUST00000106598 ENSMUSP00000102208 TRANSLATION protein_coding - CCDS84777.1 5 366.0 0.0 5.9 16.5 217.4 0.0 -4,-5 0.9901 6 11.756 ALTERNATIVE:1 ENSMUSG00000028546 Elavl4 ENSMUST00000153906 ENSMUSP00000120942 TRANSLATION protein_coding stop - 5 94.0 0.0 1.3 0.0 49.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028546 Elavl4 ENSMUST00000106601 ENSMUSP00000102212 TRANSLATION protein_coding - - 5 366.0 0.0 5.9 16.5 217.4 0.0 -4,-5 0.8306 6 11.756 ALTERNATIVE:1 ENSMUSG00000028546 Elavl4 ENSMUST00000142722 ENSMUSP00000121828 TRANSLATION protein_coding stop - 2 92.0 0.0 0.8 0.0 26.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028546 Elavl4 ENSMUST00000102723 ENSMUSP00000099784 TRANSLATION protein_coding - CCDS18470.1 1 380.0 0.0 5.9 12.7 217.4 0.0 -4,-5 0.9622 7 10.836 MINOR ENSMUSG00000034871 Fam151a ENSMUST00000047620 ENSMUSP00000047860 TRANSLATION protein_coding - CCDS18425.1 1 608.0 0.0 7.0 0.4 496.6 0.0 -2,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000028409 Smu1 ENSMUST00000130503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028409 Smu1 ENSMUST00000150574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028409 Smu1 ENSMUST00000137415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028409 Smu1 ENSMUST00000030117 ENSMUSP00000030117 TRANSLATION protein_coding - CCDS18050.1 1 513.0 0.0 11.33 31.2 131.6 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000043753 Dmrta1 ENSMUST00000052478 ENSMUSP00000057488 TRANSLATION protein_coding - CCDS18352.1 1 490.0 8.0 0.5 2.6 144.9 0.0 -4,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000043753 Dmrta1 ENSMUST00000131576 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000111611 Or13c7c ENSMUST00000214281 ENSMUSP00000149336 TRANSLATION protein_coding - CCDS18114.1 5 318.0 0.0 1.0 12.5 195.2 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111611 Or13c7c ENSMUST00000215442 ENSMUSP00000150429 TRANSLATION protein_coding - CCDS18114.1 - 318.0 0.0 1.0 12.5 195.2 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035275 Raver2 ENSMUST00000106955 ENSMUSP00000102568 TRANSLATION protein_coding - - 1 459.0 0.0 3.35 0.0 102.9 0.0 -4,-7 0.752 5 8.0 PRINCIPAL:2 ENSMUSG00000035275 Raver2 ENSMUST00000148148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035275 Raver2 ENSMUST00000038463 ENSMUSP00000043142 TRANSLATION protein_coding - CCDS18392.1 1 673.0 0.0 3.35 0.1 102.9 0.0 -4,-7 0.3855 9 8.0 ALTERNATIVE:2 ENSMUSG00000028896 Rcc1 ENSMUST00000131307 - NO_TRANSLATION retained_intron ENSMUSG00000028896 Rcc1 ENSMUST00000137238 - NO_TRANSLATION retained_intron ENSMUSG00000028896 Rcc1 ENSMUST00000105951 ENSMUSP00000101571 TRANSLATION protein_coding - CCDS18723.1 5 421.0 0.0 9.75 28.1 288.5 0.0 -4,-6 1.0 11 15.4 PRINCIPAL:1 ENSMUSG00000028896 Rcc1 ENSMUST00000084250 ENSMUSP00000081271 TRANSLATION protein_coding - CCDS18723.1 1 421.0 0.0 9.75 28.1 288.5 0.0 -4,-6 1.0 11 15.4 PRINCIPAL:1 ENSMUSG00000028896 Rcc1 ENSMUST00000155194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028896 Rcc1 ENSMUST00000156710 - NO_TRANSLATION retained_intron ENSMUSG00000028896 Rcc1 ENSMUST00000030726 ENSMUSP00000030726 TRANSLATION protein_coding - CCDS57303.1 1 434.0 0.0 10.05 6.1 288.5 0.0 -4,-5 0.4875 11 12.752 MINOR ENSMUSG00000028896 Rcc1 ENSMUST00000155129 ENSMUSP00000120701 TRANSLATION protein_coding stop - 5 116.0 0.0 2.5 0.0 72.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000003644 Rps6ka1 ENSMUST00000168974 ENSMUSP00000126774 TRANSLATION protein_coding - CCDS71487.1 1 719.0 38.0 17.91 6.0 527.7 0.0 -4,-5 0.4742 14 18.896 MINOR ENSMUSG00000003644 Rps6ka1 ENSMUST00000129636 - NO_TRANSLATION retained_intron ENSMUSG00000003644 Rps6ka1 ENSMUST00000173989 - NO_TRANSLATION retained_intron ENSMUSG00000003644 Rps6ka1 ENSMUST00000174481 ENSMUSP00000134507 TRANSLATION protein_coding - - 5 625.0 30.0 15.83 5.1 495.2 0.0 -4,-5 0.1437 14 7.294 MINOR ENSMUSG00000003644 Rps6ka1 ENSMUST00000003741 ENSMUSP00000003741 TRANSLATION protein_coding - CCDS71488.1 1 724.0 38.0 17.58 0.0 493.2 0.0 -4,-5 0.1487 14 15.27 MINOR ENSMUSG00000003644 Rps6ka1 ENSMUST00000157067 ENSMUSP00000121341 TRANSLATION protein_coding - - 1 736.0 38.0 17.91 0.0 527.7 0.0 -4,-1 0.3914 14 18.0 MINOR ENSMUSG00000003644 Rps6ka1 ENSMUST00000137486 ENSMUSP00000119328 TRANSLATION protein_coding stop - 5 741.0 38.0 17.91 11.4 527.7 0.0 -4,-2 0.716 14 -2.0 MINOR ENSMUSG00000003644 Rps6ka1 ENSMUST00000173961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003644 Rps6ka1 ENSMUST00000105894 ENSMUSP00000101514 TRANSLATION protein_coding - CCDS18758.2 1 735.0 38.0 17.91 23.3 527.7 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000096826 Ccl27b ENSMUST00000177785 ENSMUSP00000137284 TRANSLATION protein_coding - CCDS51159.1 1 120.0 0.0 2.0 2.7 30.8 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000037692 Ahdc1 ENSMUST00000145682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037692 Ahdc1 ENSMUST00000044521 ENSMUSP00000047113 TRANSLATION protein_coding - CCDS38900.1 1 1594.0 0.0 0.0 4.6 43.7 0.0 -4,-6 1.0 26 8.0 PRINCIPAL:1 ENSMUSG00000037692 Ahdc1 ENSMUST00000148518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037692 Ahdc1 ENSMUST00000142524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037692 Ahdc1 ENSMUST00000105915 ENSMUSP00000101535 TRANSLATION protein_coding - CCDS38900.1 1 1594.0 0.0 0.0 4.6 43.7 0.0 -4,-6 1.0 26 8.0 PRINCIPAL:1 ENSMUSG00000037692 Ahdc1 ENSMUST00000105914 ENSMUSP00000101534 TRANSLATION protein_coding - CCDS38900.1 5 1594.0 0.0 0.0 4.6 43.7 0.0 -4,-6 1.0 26 8.0 PRINCIPAL:1 ENSMUSG00000037692 Ahdc1 ENSMUST00000135548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037692 Ahdc1 ENSMUST00000105916 ENSMUSP00000101536 TRANSLATION protein_coding - CCDS38900.1 5 1594.0 0.0 0.0 4.6 43.7 0.0 -4,-6 1.0 26 8.0 PRINCIPAL:1 ENSMUSG00000037692 Ahdc1 ENSMUST00000156677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037692 Ahdc1 ENSMUST00000154482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037692 Ahdc1 ENSMUST00000154646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028414 Fktn ENSMUST00000128667 ENSMUSP00000114699 TRANSLATION protein_coding - CCDS18191.1 1 461.0 0.0 1.76 25.7 0.0 0.0 0,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000028414 Fktn ENSMUST00000061771 ENSMUSP00000061489 TRANSLATION protein_coding - CCDS18191.1 5 461.0 0.0 1.76 25.7 0.0 0.0 0,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000028414 Fktn ENSMUST00000107638 ENSMUSP00000138774 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0207 - -2.0 MINOR ENSMUSG00000028414 Fktn ENSMUST00000221657 ENSMUSP00000152867 TRANSLATION protein_coding - - 5 500.0 0.0 1.76 0.0 0.0 0.0 -4,-5 0.0421 1 6.0 MINOR ENSMUSG00000028414 Fktn ENSMUST00000222290 ENSMUSP00000152154 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0207 - -2.0 MINOR ENSMUSG00000090053 Pakap ENSMUST00000102905 ENSMUSP00000099969 TRANSLATION protein_coding - CCDS18202.1 5 376.0 0.0 0.0 3.0 354.6 0.0 -4,-5 1.0 7 7.0 PRINCIPAL:1 ENSMUSG00000090053 Pakap ENSMUST00000131201 - NO_TRANSLATION retained_intron ENSMUSG00000090053 Pakap ENSMUST00000102904 ENSMUSP00000099968 TRANSLATION protein_coding - CCDS18202.1 1 376.0 0.0 0.0 3.0 354.6 0.0 -4,-5 1.0 7 7.0 PRINCIPAL:1 ENSMUSG00000090053 Pakap ENSMUST00000142556 ENSMUSP00000129817 TRANSLATION nonsense_mediated_decay - - 5 139.0 0.0 0.0 0.0 71.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060268 Armh1 ENSMUST00000130660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060268 Armh1 ENSMUST00000077500 - NO_TRANSLATION retained_intron ENSMUSG00000060268 Armh1 ENSMUST00000165128 ENSMUSP00000128613 TRANSLATION protein_coding - CCDS51280.1 5 441.0 0.0 0.0 3.1 0.0 0.0 -4,-5 0.9568 2 1.0 PRINCIPAL:1 ENSMUSG00000073723 Gm13102 ENSMUST00000097799 ENSMUSP00000095408 TRANSLATION protein_coding - CCDS57309.1 2 500.0 0.0 1.7 0.0 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028439 Fam219a ENSMUST00000130288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028439 Fam219a ENSMUST00000108050 ENSMUSP00000103685 TRANSLATION protein_coding - - 5 156.0 0.0 0.0 2.1 176.7 0.0 -4,-5 0.0779 2 6.006 MINOR ENSMUSG00000028439 Fam219a ENSMUST00000108052 ENSMUSP00000103687 TRANSLATION protein_coding - CCDS51141.1 1 168.0 0.0 0.0 11.0 182.1 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000028439 Fam219a ENSMUST00000108049 ENSMUSP00000103684 TRANSLATION protein_coding - CCDS38718.1 1 157.0 0.0 0.0 2.1 182.1 0.0 -4,-5 0.238 2 6.33 MINOR ENSMUSG00000028439 Fam219a ENSMUST00000146276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028223 Decr1 ENSMUST00000154639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028223 Decr1 ENSMUST00000150464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028223 Decr1 ENSMUST00000029877 ENSMUSP00000029877 TRANSLATION protein_coding - CCDS17985.1 1 335.0 33.0 7.25 7.5 111.6 0.0 -4,-1 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000032726 Bmp8a ENSMUST00000102641 ENSMUSP00000099701 TRANSLATION protein_coding - CCDS18616.1 1 399.0 0.0 3.67 6.6 345.0 0.0 1,-2 1.0 - 13.4 PRINCIPAL:1 ENSMUSG00000032726 Bmp8a ENSMUST00000040496 ENSMUSP00000037779 TRANSLATION protein_coding - CCDS57293.1 1 412.0 0.0 3.97 0.0 334.8 0.0 1,-2 0.2355 - 11.388 MINOR ENSMUSG00000041052 Slc7a13 ENSMUST00000035890 ENSMUSP00000036228 TRANSLATION protein_coding - CCDS17993.1 1 478.0 0.0 4.0 2.7 61.0 0.0 -4,-6 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000063882 Uqcrh ENSMUST00000134760 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063882 Uqcrh ENSMUST00000078676 ENSMUSP00000077744 TRANSLATION protein_coding - CCDS38846.1 1 89.0 0.0 2.41 17.8 82.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000063882 Uqcrh ENSMUST00000127175 - NO_TRANSLATION retained_intron ENSMUSG00000063882 Uqcrh ENSMUST00000050580 ENSMUSP00000052395 TRANSLATION protein_coding - - 1 54.0 0.0 1.41 0.0 48.3 0.0 -4,-5 0.0 1 7.02 MINOR ENSMUSG00000063882 Uqcrh ENSMUST00000142468 - NO_TRANSLATION retained_intron ENSMUSG00000095935 Gm11238 ENSMUST00000084479 ENSMUSP00000081519 TRANSLATION protein_coding - - 5 360.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.6926 - 6.0 PRINCIPAL:1 ENSMUSG00000028495 Rps6 ENSMUST00000136174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028495 Rps6 ENSMUST00000102814 ENSMUSP00000099878 TRANSLATION protein_coding - CCDS18310.1 1 249.0 0.0 4.0 32.7 232.4 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000028495 Rps6 ENSMUST00000123229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028495 Rps6 ENSMUST00000130001 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028799 Zfp362 ENSMUST00000138371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028799 Zfp362 ENSMUST00000106072 ENSMUSP00000101686 TRANSLATION protein_coding - CCDS38884.1 5 418.0 24.0 2.79 11.4 124.9 0.0 -4,-2 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000028799 Zfp362 ENSMUST00000071108 ENSMUSP00000065733 TRANSLATION protein_coding - CCDS38884.1 1 418.0 24.0 2.79 11.4 124.9 0.0 -4,-2 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000028799 Zfp362 ENSMUST00000170934 ENSMUSP00000128499 TRANSLATION protein_coding stop - 3 367.0 22.0 2.39 0.0 106.4 0.0 -4,-5 0.0169 5 -2.0 MINOR ENSMUSG00000006216 Clcnkb ENSMUST00000135486 ENSMUSP00000119059 TRANSLATION protein_coding start - 2 73.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000006216 Clcnkb ENSMUST00000145725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006216 Clcnkb ENSMUST00000006378 ENSMUSP00000006378 TRANSLATION protein_coding - CCDS18872.1 1 687.0 0.0 15.0 9.6 280.5 10.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000006216 Clcnkb ENSMUST00000105788 ENSMUSP00000101414 TRANSLATION protein_coding - - 1 676.0 0.0 14.5 0.0 280.5 10.0 -4,-5 0.1017 - 10.998 MINOR ENSMUSG00000044700 Tmem201 ENSMUST00000139923 - NO_TRANSLATION retained_intron ENSMUSG00000044700 Tmem201 ENSMUST00000103208 ENSMUSP00000099497 TRANSLATION protein_coding - CCDS18965.1 1 392.0 4.0 0.0 2.1 429.7 7.0 -1,-6 0.2341 8 10.393 MINOR ENSMUSG00000044700 Tmem201 ENSMUST00000105687 ENSMUSP00000101312 TRANSLATION protein_coding - CCDS71523.1 1 664.0 4.0 0.0 8.5 430.5 7.0 -1,-6 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000044700 Tmem201 ENSMUST00000140889 - NO_TRANSLATION retained_intron ENSMUSG00000044700 Tmem201 ENSMUST00000054459 ENSMUSP00000050481 TRANSLATION protein_coding - - 2 634.0 4.0 0.0 0.0 430.5 7.0 -1,-6 0.1033 9 10.0 MINOR ENSMUSG00000044700 Tmem201 ENSMUST00000145405 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008932 Slc1a7 ENSMUST00000106713 ENSMUSP00000102324 TRANSLATION protein_coding - - 1 559.0 0.0 7.49 3.9 419.0 9.0 -3,-5 0.5706 - 7.0 ALTERNATIVE:2 ENSMUSG00000008932 Slc1a7 ENSMUST00000238795 ENSMUSP00000158982 TRANSLATION protein_coding - CCDS18444.2 - 569.0 0.0 7.49 3.9 419.0 9.0 -4,-7 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000008932 Slc1a7 ENSMUST00000124190 - NO_TRANSLATION retained_intron ENSMUSG00000028977 Casz1 ENSMUST00000122222 ENSMUSP00000112978 TRANSLATION protein_coding - CCDS51379.1 5 1762.0 33.0 0.0 0.0 0.0 0.0 -4,-5 0.9655 27 6.0 PRINCIPAL:1 ENSMUSG00000028977 Casz1 ENSMUST00000147270 ENSMUSP00000116095 TRANSLATION protein_coding stop - 5 213.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0326 3 -2.0 MINOR ENSMUSG00000028977 Casz1 ENSMUST00000094464 ENSMUSP00000092035 TRANSLATION protein_coding - CCDS38973.1 1 1166.0 16.0 0.0 1.0 0.0 0.0 -4,-5 0.3478 22 0.0 MINOR ENSMUSG00000028977 Casz1 ENSMUST00000140617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028977 Casz1 ENSMUST00000128881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028977 Casz1 ENSMUST00000139806 ENSMUSP00000120307 TRANSLATION protein_coding start - 1 702.0 16.0 0.0 0.0 0.0 0.0 -4,-7 0.0946 10 -2.0 MINOR ENSMUSG00000028977 Casz1 ENSMUST00000239035 ENSMUSP00000158908 TRANSLATION protein_coding start - - 626.0 17.0 0.0 0.0 0.0 0.0 -4,-7 0.0927 3 -2.0 MINOR ENSMUSG00000042477 Tfap2e ENSMUST00000048194 ENSMUSP00000035902 TRANSLATION protein_coding - CCDS18658.1 1 442.0 0.0 4.0 2.4 289.7 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000028464 Tpm2 ENSMUST00000107913 ENSMUSP00000103546 TRANSLATION protein_coding - CCDS18100.1 1 284.0 0.0 8.0 36.2 320.0 0.0 -4,-5 1.0 17 12.0 ALTERNATIVE:1 ENSMUSG00000028464 Tpm2 ENSMUST00000150262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028464 Tpm2 ENSMUST00000133355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028464 Tpm2 ENSMUST00000150592 ENSMUSP00000119908 TRANSLATION protein_coding stop - 3 105.0 0.0 2.75 0.0 81.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000028464 Tpm2 ENSMUST00000030184 ENSMUSP00000030184 TRANSLATION protein_coding - - 5 284.0 0.0 8.0 34.9 308.5 0.0 -4,-5 0.824 18 11.852 PRINCIPAL:3 ENSMUSG00000028464 Tpm2 ENSMUST00000107914 ENSMUSP00000103547 TRANSLATION protein_coding - CCDS71374.1 1 284.0 0.0 8.0 34.9 297.2 0.0 -4,-5 0.9561 17 11.852 MINOR ENSMUSG00000029054 Gabrd ENSMUST00000150423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029054 Gabrd ENSMUST00000030925 ENSMUSP00000030925 TRANSLATION protein_coding - CCDS19028.1 1 449.0 0.0 5.4 8.2 268.7 0.0 3,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000029054 Gabrd ENSMUST00000129892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095101 Gm13285 ENSMUST00000179725 ENSMUSP00000137222 TRANSLATION protein_coding - CCDS51227.1 - 182.0 0.0 0.4 0.0 94.5 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060288 Ppih ENSMUST00000106317 ENSMUSP00000101924 TRANSLATION protein_coding - CCDS51288.1 1 188.0 8.0 5.28 0.0 151.1 0.0 -4,-5 0.0072 9 16.092 MINOR ENSMUSG00000060288 Ppih ENSMUST00000106319 ENSMUSP00000101926 TRANSLATION protein_coding - - 3 134.0 3.0 4.33 0.0 83.3 0.0 -4,-5 0.0 7 6.372 MINOR ENSMUSG00000060288 Ppih ENSMUST00000147077 ENSMUSP00000118407 TRANSLATION protein_coding start - 5 158.0 8.0 5.33 3.0 163.9 0.0 -4,-5 0.0891 12 -2.0 MINOR ENSMUSG00000060288 Ppih ENSMUST00000106321 ENSMUSP00000101928 TRANSLATION protein_coding - CCDS18580.1 1 177.0 8.0 5.83 33.8 164.6 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000060288 Ppih ENSMUST00000056458 ENSMUSP00000051221 TRANSLATION protein_coding - CCDS18580.1 1 177.0 8.0 5.83 33.8 164.6 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000060288 Ppih ENSMUST00000106318 ENSMUSP00000101925 TRANSLATION protein_coding - CCDS18580.1 1 177.0 8.0 5.83 33.8 164.6 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000028718 Stil ENSMUST00000130401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028718 Stil ENSMUST00000030490 ENSMUSP00000030490 TRANSLATION protein_coding - CCDS18485.1 1 1262.0 0.0 0.2 0.1 650.1 0.0 -4,-7 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000028718 Stil ENSMUST00000141933 ENSMUSP00000118849 TRANSLATION nonsense_mediated_decay - - 1 399.0 0.0 0.0 0.0 565.9 0.0 -4,-7 0.0109 3 -2.0 MINOR ENSMUSG00000028718 Stil ENSMUST00000144316 - NO_TRANSLATION retained_intron ENSMUSG00000028718 Stil ENSMUST00000129957 ENSMUSP00000123385 TRANSLATION protein_coding stop - 1 640.0 0.0 0.2 0.0 620.7 0.0 -4,-7 0.0696 3 -2.0 MINOR ENSMUSG00000028718 Stil ENSMUST00000147519 ENSMUSP00000120836 TRANSLATION nonsense_mediated_decay start - 3 79.0 0.0 0.0 0.0 117.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028633 Ctps ENSMUST00000030381 ENSMUSP00000030381 TRANSLATION protein_coding - CCDS18591.1 1 591.0 29.0 14.25 33.0 622.2 0.0 -4,-6 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000028633 Ctps ENSMUST00000140891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028633 Ctps ENSMUST00000147980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066113 Adamtsl1 ENSMUST00000120678 ENSMUSP00000113330 TRANSLATION protein_coding - - 1 203.0 3.0 2.36 0.0 28.9 0.0 2,-2 0.0025 1 3.0 MINOR ENSMUSG00000066113 Adamtsl1 ENSMUST00000213098 ENSMUSP00000148689 TRANSLATION protein_coding stop - 5 127.0 2.0 0.9 0.0 28.9 0.0 0,-5 0.0 - -2.0 MINOR ENSMUSG00000066113 Adamtsl1 ENSMUST00000147066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066113 Adamtsl1 ENSMUST00000048885 ENSMUSP00000043073 TRANSLATION protein_coding - - 5 525.0 3.0 2.825 1.0 101.3 0.0 2,-2 0.0836 3 4.066 MINOR ENSMUSG00000066113 Adamtsl1 ENSMUST00000107177 - NO_TRANSLATION retained_intron ENSMUSG00000066113 Adamtsl1 ENSMUST00000130474 - NO_TRANSLATION retained_intron ENSMUSG00000066113 Adamtsl1 ENSMUST00000136418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066113 Adamtsl1 ENSMUST00000150043 - NO_TRANSLATION retained_intron ENSMUSG00000066113 Adamtsl1 ENSMUST00000107178 ENSMUSP00000102796 TRANSLATION protein_coding - CCDS51217.1 5 1753.0 3.0 4.891 0.8 405.6 0.0 2,-2 0.8267 8 9.2 MINOR ENSMUSG00000066113 Adamtsl1 ENSMUST00000126654 - NO_TRANSLATION retained_intron ENSMUSG00000066113 Adamtsl1 ENSMUST00000141889 ENSMUSP00000119278 TRANSLATION protein_coding - - 5 1745.0 3.0 5.791 0.0 379.4 0.0 2,-2 0.7066 7 11.0 PRINCIPAL:1 ENSMUSG00000066113 Adamtsl1 ENSMUST00000136320 ENSMUSP00000123343 TRANSLATION protein_coding start/stop - 3 243.0 0.0 0.945 0.0 48.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028609 Magoh ENSMUST00000030348 ENSMUSP00000030348 TRANSLATION protein_coding - CCDS18441.1 1 146.0 0.0 4.25 32.9 267.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028609 Magoh ENSMUST00000141376 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043252 Tmem64 ENSMUST00000062684 ENSMUSP00000055892 TRANSLATION protein_coding - CCDS17983.1 1 381.0 0.0 2.6 5.7 67.9 0.0 -4,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000041805 Pramel1 ENSMUST00000037419 ENSMUSP00000043718 TRANSLATION protein_coding - CCDS18888.1 1 458.0 0.0 1.8 0.1 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000073700 Klhl21 ENSMUST00000097773 ENSMUSP00000095380 TRANSLATION protein_coding - CCDS18983.1 1 597.0 0.0 3.75 6.4 288.8 0.0 -2,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000015243 Abca1 ENSMUST00000149127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015243 Abca1 ENSMUST00000030010 ENSMUSP00000030010 TRANSLATION protein_coding - CCDS18187.1 1 2261.0 15.0 32.3125 11.8 392.7 0.0 -4,-7 1.0 30 21.0 PRINCIPAL:1 ENSMUSG00000054679 Srsf12 ENSMUST00000067864 ENSMUSP00000067939 TRANSLATION protein_coding - CCDS18022.1 1 266.0 0.0 0.4 0.0 0.0 0.0 -4,-2 0.3473 - 0.498 PRINCIPAL:1 ENSMUSG00000054679 Srsf12 ENSMUST00000108159 ENSMUSP00000103794 TRANSLATION protein_coding stop - 5 261.0 0.0 3.15 7.3 66.0 0.0 -4,-2 1.0 2 -2.0 MINOR ENSMUSG00000006395 Hyi ENSMUST00000132882 - NO_TRANSLATION retained_intron ENSMUSG00000006395 Hyi ENSMUST00000194248 - NO_TRANSLATION protein_coding_LoF ENSMUSG00000006395 Hyi ENSMUST00000106393 ENSMUSP00000102001 TRANSLATION nonsense_mediated_decay - - 1 69.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.6648 - -2.0 PRINCIPAL:1 ENSMUSG00000006395 Hyi ENSMUST00000179719 - NO_TRANSLATION retained_intron ENSMUSG00000036887 C1qa ENSMUST00000046285 ENSMUSP00000048836 TRANSLATION protein_coding - CCDS18812.1 1 245.0 0.0 1.0 9.4 148.8 0.0 3,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000050511 Oprd1 ENSMUST00000056336 ENSMUSP00000050077 TRANSLATION protein_coding - CCDS18718.1 1 372.0 0.0 3.0 8.5 193.1 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000029005 Draxin ENSMUST00000030862 ENSMUSP00000030862 TRANSLATION protein_coding - CCDS18931.1 1 343.0 0.0 3.8 1.5 449.6 0.0 2,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000066000 Zfp979 ENSMUST00000037565 ENSMUSP00000038153 TRANSLATION protein_coding - CCDS59663.1 2 407.0 18.0 2.5 0.0 133.4 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000066000 Zfp979 ENSMUST00000127826 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066000 Zfp979 ENSMUST00000105720 ENSMUSP00000101345 TRANSLATION protein_coding - CCDS59663.1 2 407.0 18.0 2.5 0.0 133.4 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000066000 Zfp979 ENSMUST00000133006 ENSMUSP00000114677 TRANSLATION protein_coding stop - 2 113.0 0.0 1.08 0.0 71.6 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000042367 Gjb3 ENSMUST00000106091 ENSMUSP00000101697 TRANSLATION protein_coding - CCDS18668.1 1 270.0 0.0 0.64 11.5 265.8 4.0 -3,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000042367 Gjb3 ENSMUST00000046532 ENSMUSP00000046755 TRANSLATION protein_coding - CCDS18668.1 1 270.0 0.0 0.64 11.5 265.8 4.0 -3,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000028715 Cyp4a14 ENSMUST00000030487 ENSMUSP00000030487 TRANSLATION protein_coding - CCDS18491.1 1 507.0 30.0 11.0 7.0 426.7 0.0 -4,-6 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000028715 Cyp4a14 ENSMUST00000124412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073830 Mup14 ENSMUST00000136039 - NO_TRANSLATION retained_intron ENSMUSG00000073830 Mup14 ENSMUST00000071005 ENSMUSP00000064072 TRANSLATION protein_coding - CCDS51195.1 2 180.0 0.0 4.53 0.0 110.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073830 Mup14 ENSMUST00000075206 ENSMUSP00000074696 TRANSLATION protein_coding - CCDS51195.1 1 180.0 0.0 4.53 0.0 110.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073830 Mup14 ENSMUST00000125461 ENSMUSP00000115821 TRANSLATION protein_coding start - 5 150.0 0.0 4.08 0.0 105.9 0.0 -4,-5 0.0293 - -2.0 MINOR ENSMUSG00000040697 Dnajc16 ENSMUST00000153880 ENSMUSP00000120783 TRANSLATION protein_coding stop - 5 91.0 0.0 2.25 0.0 96.5 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000040697 Dnajc16 ENSMUST00000038014 ENSMUSP00000048714 TRANSLATION protein_coding - CCDS18882.1 1 772.0 0.0 2.876 2.0 122.4 0.0 4,-1 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000040697 Dnajc16 ENSMUST00000138654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028555 Ttc39a ENSMUST00000106618 ENSMUSP00000102229 TRANSLATION protein_coding - CCDS51260.1 1 578.0 0.0 11.065 5.2 558.4 0.0 -4,-5 1.0 8 8.0 PRINCIPAL:4 ENSMUSG00000028555 Ttc39a ENSMUST00000150909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028555 Ttc39a ENSMUST00000124209 ENSMUSP00000118672 TRANSLATION protein_coding stop - 3 137.0 0.0 3.26 0.0 166.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028555 Ttc39a ENSMUST00000153315 ENSMUSP00000117621 TRANSLATION protein_coding stop - 3 159.0 0.0 3.56 0.0 173.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000028555 Ttc39a ENSMUST00000106619 ENSMUSP00000102230 TRANSLATION protein_coding - - 1 189.0 0.0 2.81 0.0 121.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028555 Ttc39a ENSMUST00000139237 ENSMUSP00000121779 TRANSLATION protein_coding stop - 3 109.0 0.0 2.51 0.0 129.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028555 Ttc39a ENSMUST00000126797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028555 Ttc39a ENSMUST00000064129 ENSMUSP00000066334 TRANSLATION protein_coding - CCDS18463.1 1 576.0 0.0 11.065 4.3 558.4 0.0 -4,-5 0.9074 8 7.572 ALTERNATIVE:2 ENSMUSG00000095139 Pou3f2 ENSMUST00000178174 ENSMUSP00000136147 TRANSLATION protein_coding - CCDS18005.1 - 445.0 0.0 0.4 7.2 195.0 0.0 -1,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029053 Prkcz ENSMUST00000125320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029053 Prkcz ENSMUST00000123652 ENSMUSP00000121675 TRANSLATION protein_coding stop - 2 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029053 Prkcz ENSMUST00000140256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029053 Prkcz ENSMUST00000135699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029053 Prkcz ENSMUST00000131975 ENSMUSP00000116042 TRANSLATION protein_coding stop - 3 121.0 8.0 1.25 0.0 56.8 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029053 Prkcz ENSMUST00000139647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029053 Prkcz ENSMUST00000103178 ENSMUSP00000099467 TRANSLATION protein_coding - CCDS19027.1 1 409.0 18.0 8.75 13.0 244.1 0.0 -4,-5 0.3257 4 2.498 MINOR ENSMUSG00000029053 Prkcz ENSMUST00000105624 ENSMUSP00000101249 TRANSLATION protein_coding - - 1 96.0 0.0 2.6 0.0 59.6 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000029053 Prkcz ENSMUST00000030922 ENSMUSP00000030922 TRANSLATION protein_coding - CCDS19026.1 1 592.0 26.0 12.6 27.2 359.4 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000029053 Prkcz ENSMUST00000145373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048351 Coa7 ENSMUST00000131656 ENSMUSP00000114906 TRANSLATION protein_coding - CCDS18449.1 1 231.0 0.0 3.0 28.3 40.6 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000048351 Coa7 ENSMUST00000141423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048351 Coa7 ENSMUST00000147054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048351 Coa7 ENSMUST00000134394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048351 Coa7 ENSMUST00000073764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029003 Mad2l2 ENSMUST00000148742 - NO_TRANSLATION retained_intron ENSMUSG00000029003 Mad2l2 ENSMUST00000030860 ENSMUSP00000030860 TRANSLATION protein_coding - CCDS18932.1 1 211.0 0.0 6.99 34.9 36.6 0.0 -4,-7 1.0 - 15.838 PRINCIPAL:1 ENSMUSG00000029003 Mad2l2 ENSMUST00000105708 - NO_TRANSLATION retained_intron ENSMUSG00000029003 Mad2l2 ENSMUST00000132698 ENSMUSP00000122774 TRANSLATION protein_coding stop - 5 173.0 0.0 5.66 0.0 37.6 0.0 -4,-7 0.0033 - -2.0 MINOR ENSMUSG00000029003 Mad2l2 ENSMUST00000084129 ENSMUSP00000081146 TRANSLATION protein_coding - CCDS18932.1 1 211.0 0.0 6.99 34.9 36.6 0.0 -4,-7 1.0 - 15.838 PRINCIPAL:1 ENSMUSG00000029003 Mad2l2 ENSMUST00000105707 ENSMUSP00000101332 TRANSLATION protein_coding - - 3 178.0 0.0 5.33 0.0 37.6 0.0 -4,-7 0.0033 - 8.682 MINOR ENSMUSG00000029003 Mad2l2 ENSMUST00000140049 ENSMUSP00000120481 TRANSLATION protein_coding stop - 3 106.0 0.0 3.33 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029003 Mad2l2 ENSMUST00000126261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049119 Fam110b ENSMUST00000171403 ENSMUSP00000127942 TRANSLATION protein_coding - CCDS17948.1 1 366.0 0.0 0.0 24.8 274.0 0.0 -4,-5 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000049119 Fam110b ENSMUST00000144605 - NO_TRANSLATION retained_intron ENSMUSG00000049119 Fam110b ENSMUST00000124256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049119 Fam110b ENSMUST00000126564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049119 Fam110b ENSMUST00000156582 ENSMUSP00000122351 TRANSLATION protein_coding stop - 1 87.0 0.0 0.0 0.0 144.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000049119 Fam110b ENSMUST00000145365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049119 Fam110b ENSMUST00000054857 ENSMUSP00000062734 TRANSLATION protein_coding - CCDS17948.1 1 366.0 0.0 0.0 24.8 274.0 0.0 -4,-5 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000049119 Fam110b ENSMUST00000141479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049119 Fam110b ENSMUST00000108380 ENSMUSP00000104017 TRANSLATION protein_coding - CCDS17948.1 1 366.0 0.0 0.0 24.8 274.0 0.0 -4,-5 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000060862 Zbtb40 ENSMUST00000145505 - NO_TRANSLATION retained_intron ENSMUSG00000060862 Zbtb40 ENSMUST00000049583 ENSMUSP00000061899 TRANSLATION protein_coding - CCDS18814.1 1 1258.0 48.0 4.176 0.4 205.8 0.0 -4,-7 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000060862 Zbtb40 ENSMUST00000218160 ENSMUSP00000151856 TRANSLATION protein_coding start/stop - 2 269.0 34.0 3.06 0.0 118.1 0.0 -4,-5 0.002 2 -2.0 MINOR ENSMUSG00000081362 Cyp2j7 ENSMUST00000162514 ENSMUSP00000134331 TRANSLATION protein_coding - - 5 504.0 31.0 9.0 6.6 429.6 0.0 4,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000028456 Unc13b ENSMUST00000079978 ENSMUSP00000078894 TRANSLATION protein_coding - CCDS80089.1 5 1590.0 14.0 23.595 9.2 527.2 0.0 -4,-2 1.0 15 17.0 PRINCIPAL:4 ENSMUSG00000028456 Unc13b ENSMUST00000149945 - NO_TRANSLATION retained_intron ENSMUSG00000028456 Unc13b ENSMUST00000153168 - NO_TRANSLATION retained_intron ENSMUSG00000028456 Unc13b ENSMUST00000132310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028456 Unc13b ENSMUST00000168032 ENSMUSP00000132622 TRANSLATION protein_coding start/stop - 3 256.0 8.0 2.15 0.0 46.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028456 Unc13b ENSMUST00000107953 ENSMUSP00000103587 TRANSLATION protein_coding - - 5 1609.0 14.0 23.595 8.4 527.2 0.0 -4,-2 0.7913 15 16.706 ALTERNATIVE:1 ENSMUSG00000028456 Unc13b ENSMUST00000207708 ENSMUSP00000146589 TRANSLATION protein_coding - - 5 1982.0 14.0 19.185 0.4 488.9 0.0 -4,-5 0.1006 15 7.6 MINOR ENSMUSG00000028456 Unc13b ENSMUST00000127597 - NO_TRANSLATION retained_intron ENSMUSG00000028456 Unc13b ENSMUST00000171234 - NO_TRANSLATION retained_intron ENSMUSG00000028456 Unc13b ENSMUST00000207569 ENSMUSP00000147100 TRANSLATION protein_coding - - 5 4390.0 14.0 23.595 0.0 527.2 0.0 -4,-2 0.2959 15 14.0 MINOR ENSMUSG00000028456 Unc13b ENSMUST00000143653 - NO_TRANSLATION retained_intron ENSMUSG00000028456 Unc13b ENSMUST00000126878 - NO_TRANSLATION retained_intron ENSMUSG00000028456 Unc13b ENSMUST00000107952 ENSMUSP00000103586 TRANSLATION protein_coding - CCDS51161.1 1 1602.0 14.0 23.595 6.3 527.2 0.0 -4,-2 0.8905 15 15.938 ALTERNATIVE:1 ENSMUSG00000028456 Unc13b ENSMUST00000151611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028456 Unc13b ENSMUST00000145899 ENSMUSP00000128638 TRANSLATION protein_coding start/stop - 5 189.0 0.0 4.875 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028456 Unc13b ENSMUST00000163653 ENSMUSP00000128608 TRANSLATION protein_coding - CCDS38738.1 1 1601.0 14.0 23.595 6.3 526.2 0.0 -4,-2 0.8868 15 15.938 MINOR ENSMUSG00000028556 Dock7 ENSMUST00000206128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028556 Dock7 ENSMUST00000140225 - NO_TRANSLATION retained_intron ENSMUSG00000028556 Dock7 ENSMUST00000131386 ENSMUSP00000145985 TRANSLATION nonsense_mediated_decay start - 5 46.0 0.0 1.25 0.0 36.7 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000028556 Dock7 ENSMUST00000124466 ENSMUSP00000145749 TRANSLATION nonsense_mediated_decay start - 5 811.0 0.0 4.01 0.0 142.0 0.0 -4,-5 0.0027 18 -2.0 MINOR ENSMUSG00000028556 Dock7 ENSMUST00000205783 - NO_TRANSLATION retained_intron ENSMUSG00000028556 Dock7 ENSMUST00000124040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028556 Dock7 ENSMUST00000140848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028556 Dock7 ENSMUST00000127946 ENSMUSP00000119103 TRANSLATION protein_coding start/stop - 5 247.0 0.0 0.33 0.0 0.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000028556 Dock7 ENSMUST00000206604 - NO_TRANSLATION retained_intron ENSMUSG00000028556 Dock7 ENSMUST00000150254 ENSMUSP00000114204 TRANSLATION protein_coding start/stop - 3 255.0 0.0 0.66 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000028556 Dock7 ENSMUST00000030286 ENSMUSP00000030286 TRANSLATION protein_coding - CCDS71425.1 5 2128.0 0.0 12.1775 18.6 997.1 0.0 -4,-2 1.0 44 12.0 PRINCIPAL:4 ENSMUSG00000028556 Dock7 ENSMUST00000205652 ENSMUSP00000145833 TRANSLATION nonsense_mediated_decay start - 5 102.0 0.0 1.0 0.0 61.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028556 Dock7 ENSMUST00000153362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028556 Dock7 ENSMUST00000205484 - NO_TRANSLATION retained_intron ENSMUSG00000028556 Dock7 ENSMUST00000139152 - NO_TRANSLATION retained_intron ENSMUSG00000028556 Dock7 ENSMUST00000075836 ENSMUSP00000075233 TRANSLATION protein_coding - - 5 2100.0 0.0 12.1775 16.6 999.2 0.0 -4,-2 0.8364 42 11.544 ALTERNATIVE:1 ENSMUSG00000028556 Dock7 ENSMUST00000127417 ENSMUSP00000117797 TRANSLATION protein_coding - - 5 2130.0 0.0 12.1775 18.6 999.2 0.0 -4,-2 0.8703 44 12.0 ALTERNATIVE:1 ENSMUSG00000028556 Dock7 ENSMUST00000205650 ENSMUSP00000145604 TRANSLATION protein_coding - CCDS38816.1 5 2098.0 0.0 12.1775 16.6 997.1 0.0 -4,-2 0.9791 42 11.544 ALTERNATIVE:1 ENSMUSG00000089687 Rab42 ENSMUST00000040411 ENSMUSP00000047735 TRANSLATION protein_coding - CCDS38898.1 1 215.0 19.0 2.0 8.4 163.4 0.0 -4,-6 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000028692 Akr1a1 ENSMUST00000126146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028692 Akr1a1 ENSMUST00000128010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028692 Akr1a1 ENSMUST00000128059 ENSMUSP00000114861 TRANSLATION protein_coding stop - 3 203.0 10.0 4.25 0.0 128.4 0.0 -4,-6 0.0 10 -2.0 MINOR ENSMUSG00000028692 Akr1a1 ENSMUST00000030455 ENSMUSP00000030455 TRANSLATION protein_coding - CCDS18514.1 1 325.0 28.0 7.75 21.2 188.1 0.0 -4,-6 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000028868 Wasf2 ENSMUST00000084241 ENSMUSP00000081263 TRANSLATION protein_coding - CCDS18742.1 1 497.0 0.0 4.4 3.0 28.7 0.0 -4,-6 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000028868 Wasf2 ENSMUST00000136637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028868 Wasf2 ENSMUST00000123578 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028868 Wasf2 ENSMUST00000138831 ENSMUSP00000117314 TRANSLATION protein_coding stop - 2 85.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000028868 Wasf2 ENSMUST00000105912 ENSMUSP00000101532 TRANSLATION protein_coding - CCDS18742.1 1 497.0 0.0 4.4 3.0 28.7 0.0 -4,-6 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000028868 Wasf2 ENSMUST00000136132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028758 Kif17 ENSMUST00000105820 - NO_TRANSLATION retained_intron ENSMUSG00000028758 Kif17 ENSMUST00000105818 ENSMUSP00000101444 TRANSLATION protein_coding - - 2 756.0 0.0 3.882 0.0 112.5 0.0 -4,-5 0.0093 1 0.9 MINOR ENSMUSG00000028758 Kif17 ENSMUST00000030539 ENSMUSP00000030539 TRANSLATION protein_coding - CCDS18823.1 1 1038.0 11.0 6.432 0.4 390.5 0.0 -4,-2 1.0 3 14.0 PRINCIPAL:2 ENSMUSG00000028758 Kif17 ENSMUST00000105821 ENSMUSP00000101447 TRANSLATION protein_coding - CCDS57307.1 1 710.0 11.0 6.432 0.0 390.5 0.0 -4,-2 0.3265 3 14.0 ALTERNATIVE:2 ENSMUSG00000046671 Mtfr1l ENSMUST00000154769 ENSMUSP00000117943 TRANSLATION protein_coding stop - 5 237.0 0.0 0.0 0.0 203.2 0.0 -4,-6 0.0045 3 -2.0 MINOR ENSMUSG00000046671 Mtfr1l ENSMUST00000131613 ENSMUSP00000123326 TRANSLATION nonsense_mediated_decay - - 5 202.0 0.0 0.0 2.7 189.0 0.0 -4,-6 0.0286 3 -2.0 MINOR ENSMUSG00000046671 Mtfr1l ENSMUST00000146808 ENSMUSP00000120200 TRANSLATION protein_coding stop - 2 225.0 0.0 0.0 0.0 198.3 0.0 -4,-6 0.0028 3 -2.0 MINOR ENSMUSG00000046671 Mtfr1l ENSMUST00000102550 ENSMUSP00000099609 TRANSLATION protein_coding - CCDS18775.1 1 289.0 0.0 0.0 20.5 230.3 0.0 -4,-6 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000046671 Mtfr1l ENSMUST00000129836 - NO_TRANSLATION retained_intron ENSMUSG00000046671 Mtfr1l ENSMUST00000116279 ENSMUSP00000111983 TRANSLATION protein_coding - CCDS18775.1 1 289.0 0.0 0.0 20.5 230.3 0.0 -4,-6 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000046671 Mtfr1l ENSMUST00000130187 - NO_TRANSLATION retained_intron ENSMUSG00000008305 Tle1 ENSMUST00000140154 ENSMUSP00000118513 TRANSLATION protein_coding start/stop - 3 167.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000008305 Tle1 ENSMUST00000030095 ENSMUSP00000030095 TRANSLATION protein_coding - - 5 780.0 0.0 9.72 23.2 275.5 0.0 -4,-2 0.7987 4 10.34 MINOR ENSMUSG00000008305 Tle1 ENSMUST00000123259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008305 Tle1 ENSMUST00000134225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008305 Tle1 ENSMUST00000132550 - NO_TRANSLATION retained_intron ENSMUSG00000008305 Tle1 ENSMUST00000107337 ENSMUSP00000102960 TRANSLATION protein_coding - CCDS71407.1 1 200.0 0.0 4.15 1.9 253.1 0.0 -4,-2 0.0646 1 1.164 MINOR ENSMUSG00000008305 Tle1 ENSMUST00000137075 ENSMUSP00000118683 TRANSLATION protein_coding stop - 3 194.0 0.0 4.15 0.0 249.5 0.0 0,-4 0.0064 1 -2.0 MINOR ENSMUSG00000008305 Tle1 ENSMUST00000102848 ENSMUSP00000099912 TRANSLATION protein_coding - - 1 777.0 0.0 10.05 0.4 275.7 0.0 -4,-2 0.1253 4 7.0 MINOR ENSMUSG00000008305 Tle1 ENSMUST00000072695 ENSMUSP00000072481 TRANSLATION protein_coding - CCDS18274.1 1 770.0 0.0 10.05 23.2 282.0 0.0 -4,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000100505 Gm13283 ENSMUST00000191112 ENSMUSP00000139768 TRANSLATION protein_coding - CCDS57282.1 - 182.0 0.0 0.4 0.0 90.7 0.0 0,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035637 Grhpr ENSMUST00000150394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035637 Grhpr ENSMUST00000128973 ENSMUSP00000120061 TRANSLATION protein_coding stop - 5 58.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035637 Grhpr ENSMUST00000151148 ENSMUSP00000120254 TRANSLATION protein_coding stop - 5 222.0 24.0 6.58 0.0 213.2 0.0 -4,-2 0.0002 5 -2.0 MINOR ENSMUSG00000035637 Grhpr ENSMUST00000151631 ENSMUSP00000117800 TRANSLATION nonsense_mediated_decay - - 5 197.0 15.0 5.91 0.0 137.8 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000035637 Grhpr ENSMUST00000045078 ENSMUSP00000047218 TRANSLATION protein_coding - CCDS18128.1 1 328.0 27.0 9.74 13.0 287.5 0.0 -2,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000035637 Grhpr ENSMUST00000143589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040520 Manea ENSMUST00000133105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040520 Manea ENSMUST00000041374 ENSMUSP00000038671 TRANSLATION protein_coding - CCDS18012.1 1 462.0 0.0 3.75 9.2 627.4 0.0 0,-4 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000040520 Manea ENSMUST00000140492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040520 Manea ENSMUST00000153813 ENSMUSP00000115791 TRANSLATION protein_coding stop - 3 70.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000066042 Med18 ENSMUST00000123604 ENSMUSP00000120535 TRANSLATION protein_coding stop - 3 122.0 0.0 1.45 0.0 36.6 0.0 -2,2 0.0 1 -2.0 MINOR ENSMUSG00000066042 Med18 ENSMUST00000102567 ENSMUSP00000099627 TRANSLATION protein_coding - CCDS18725.1 1 208.0 0.0 2.45 30.8 129.1 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000033985 Tesk2 ENSMUST00000106459 ENSMUSP00000102067 TRANSLATION protein_coding - - 1 319.0 20.0 4.98 0.0 129.0 0.0 -4,-6 0.0007 2 11.658 MINOR ENSMUSG00000033985 Tesk2 ENSMUST00000045542 ENSMUSP00000041009 TRANSLATION protein_coding - CCDS18516.1 1 570.0 20.0 7.0 9.6 167.4 0.0 -4,-6 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000033985 Tesk2 ENSMUST00000142529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033985 Tesk2 ENSMUST00000106456 ENSMUSP00000102064 TRANSLATION protein_coding - - 5 541.0 20.0 6.25 0.0 152.5 0.0 -4,-6 0.0155 3 15.606 MINOR ENSMUSG00000028402 Mpdz ENSMUST00000156441 - NO_TRANSLATION retained_intron ENSMUSG00000028402 Mpdz ENSMUST00000141995 ENSMUSP00000118283 TRANSLATION protein_coding start/stop - 5 348.0 0.0 2.1 0.0 51.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028402 Mpdz ENSMUST00000102830 ENSMUSP00000099894 TRANSLATION protein_coding - CCDS18292.1 1 2055.0 0.0 28.95 0.1 838.8 0.0 -4,-5 0.8807 34 8.0 ALTERNATIVE:2 ENSMUSG00000028402 Mpdz ENSMUST00000131547 ENSMUSP00000116767 TRANSLATION protein_coding start/stop - 5 209.0 0.0 4.2 0.0 63.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000028402 Mpdz ENSMUST00000134726 ENSMUSP00000116830 TRANSLATION protein_coding start - 5 495.0 0.0 9.3 0.0 270.4 0.0 -4,-2 0.001 11 -2.0 MINOR ENSMUSG00000028402 Mpdz ENSMUST00000125288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028402 Mpdz ENSMUST00000124805 - NO_TRANSLATION retained_intron ENSMUSG00000028402 Mpdz ENSMUST00000220807 ENSMUSP00000152533 TRANSLATION protein_coding - - 5 2069.0 0.0 28.95 0.0 838.8 0.0 -4,-5 0.5978 34 8.0 ALTERNATIVE:2 ENSMUSG00000028402 Mpdz ENSMUST00000140425 - NO_TRANSLATION retained_intron ENSMUSG00000028402 Mpdz ENSMUST00000129732 - NO_TRANSLATION retained_intron ENSMUSG00000028402 Mpdz ENSMUST00000131197 ENSMUSP00000122498 TRANSLATION protein_coding start/stop - 5 269.0 0.0 4.33 0.0 72.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000028402 Mpdz ENSMUST00000107258 ENSMUSP00000102879 TRANSLATION protein_coding - - 1 2022.0 0.0 28.95 0.1 838.8 0.0 -4,-5 1.0 34 8.0 PRINCIPAL:4 ENSMUSG00000028402 Mpdz ENSMUST00000142273 - NO_TRANSLATION retained_intron ENSMUSG00000028402 Mpdz ENSMUST00000134572 ENSMUSP00000122308 TRANSLATION protein_coding start/stop - 5 138.0 0.0 1.6 0.0 29.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028402 Mpdz ENSMUST00000131418 - NO_TRANSLATION retained_intron ENSMUSG00000047518 Slfnl1 ENSMUST00000062990 ENSMUSP00000050896 TRANSLATION protein_coding - CCDS18590.1 1 410.0 0.0 0.0 2.1 95.8 0.0 -4,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000087198 Tmem274 ENSMUST00000229840 ENSMUSP00000155262 TRANSLATION nonsense_mediated_decay - - - 73.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.028 - -2.0 MINOR ENSMUSG00000087198 Tmem274 ENSMUST00000210722 ENSMUSP00000154867 TRANSLATION protein_coding - - - 162.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5622 - 0.0 PRINCIPAL:1 ENSMUSG00000073876 Gm13305 ENSMUST00000152686 - NO_TRANSLATION retained_intron ENSMUSG00000073876 Gm13305 ENSMUST00000148376 - NO_TRANSLATION retained_intron ENSMUSG00000073876 Gm13305 ENSMUST00000098121 ENSMUSP00000095725 TRANSLATION protein_coding - CCDS51150.1 1 432.0 0.0 6.515 0.4 0.0 0.0 1,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000073876 Gm13305 ENSMUST00000129970 - NO_TRANSLATION retained_intron ENSMUSG00000073876 Gm13305 ENSMUST00000154884 - NO_TRANSLATION retained_intron ENSMUSG00000073876 Gm13305 ENSMUST00000133764 - NO_TRANSLATION retained_intron ENSMUSG00000029030 Tprgl ENSMUST00000133165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029030 Tprgl ENSMUST00000105639 ENSMUSP00000101264 TRANSLATION protein_coding - - 5 207.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 4 4.002 MINOR ENSMUSG00000029030 Tprgl ENSMUST00000134492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029030 Tprgl ENSMUST00000136374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029030 Tprgl ENSMUST00000030896 ENSMUSP00000030896 TRANSLATION protein_coding - CCDS19011.1 1 266.0 0.0 3.0 11.3 98.8 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000078510 Pramel28 ENSMUST00000105763 ENSMUSP00000101389 TRANSLATION protein_coding - - 1 481.0 0.0 2.1 0.4 0.0 0.0 -4,-7 0.6587 - 6.0 PRINCIPAL:1 ENSMUSG00000078719 Msmp ENSMUST00000107884 ENSMUSP00000103516 TRANSLATION protein_coding - CCDS51167.1 3 139.0 0.0 1.6 8.8 33.4 0.0 2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039137 Whrn ENSMUST00000063650 ENSMUSP00000069664 TRANSLATION protein_coding - CCDS18257.1 1 907.0 0.0 9.666 1.5 158.1 0.0 -4,-7 0.6603 4 9.0 ALTERNATIVE:2 ENSMUSG00000039137 Whrn ENSMUST00000145630 ENSMUSP00000116387 TRANSLATION nonsense_mediated_decay start - 1 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039137 Whrn ENSMUST00000144965 ENSMUSP00000121944 TRANSLATION protein_coding start - 3 74.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039137 Whrn ENSMUST00000155058 - NO_TRANSLATION retained_intron ENSMUSG00000039137 Whrn ENSMUST00000119294 ENSMUSP00000114030 TRANSLATION protein_coding - - 1 465.0 0.0 4.0 0.0 33.0 0.0 -4,-7 0.0 2 0.4 MINOR ENSMUSG00000039137 Whrn ENSMUST00000095037 ENSMUSP00000092647 TRANSLATION protein_coding - - 1 404.0 0.0 2.0 0.0 33.0 0.0 -4,-5 0.0 2 0.4 MINOR ENSMUSG00000039137 Whrn ENSMUST00000140720 - NO_TRANSLATION retained_intron ENSMUSG00000039137 Whrn ENSMUST00000148957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039137 Whrn ENSMUST00000084510 ENSMUSP00000081557 TRANSLATION protein_coding - CCDS18255.1 1 918.0 0.0 9.666 1.5 158.1 0.0 -4,-7 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000039137 Whrn ENSMUST00000095038 ENSMUSP00000092648 TRANSLATION protein_coding - - 1 476.0 0.0 4.0 0.0 33.0 0.0 -4,-7 0.0 2 0.4 MINOR ENSMUSG00000039137 Whrn ENSMUST00000102867 ENSMUSP00000099931 TRANSLATION protein_coding - CCDS18256.1 1 906.0 0.0 9.666 1.5 158.1 0.0 -4,-7 0.6565 4 9.0 ALTERNATIVE:2 ENSMUSG00000039137 Whrn ENSMUST00000107393 ENSMUSP00000103016 TRANSLATION protein_coding - CCDS38778.1 1 911.0 0.0 9.666 1.4 158.1 0.0 -4,-7 0.6741 4 8.8 ALTERNATIVE:2 ENSMUSG00000039137 Whrn ENSMUST00000145133 - NO_TRANSLATION retained_intron ENSMUSG00000039137 Whrn ENSMUST00000153307 - NO_TRANSLATION retained_intron ENSMUSG00000039137 Whrn ENSMUST00000124016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039137 Whrn ENSMUST00000063672 ENSMUSP00000065838 TRANSLATION protein_coding - - 1 571.0 0.0 7.666 0.0 125.1 0.0 -4,-7 0.002 2 3.598 MINOR ENSMUSG00000039137 Whrn ENSMUST00000133425 ENSMUSP00000119280 TRANSLATION protein_coding start - 1 164.0 0.0 3.8 0.0 54.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078521 Aunip ENSMUST00000105866 ENSMUSP00000101492 TRANSLATION protein_coding - CCDS51326.1 1 340.0 0.0 0.0 0.4 436.8 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000015242 Nipsnap3a ENSMUST00000015386 ENSMUSP00000015386 TRANSLATION nonsense_mediated_decay - CCDS51177.1 1 245.0 0.0 4.5 12.2 169.3 0.0 -4,0 1.0 1 -2.0 MINOR ENSMUSG00000015242 Nipsnap3a ENSMUST00000107666 ENSMUSP00000103293 TRANSLATION protein_coding - - 5 247.0 0.0 4.5 5.2 169.3 0.0 -4,-1 0.5928 1 13.125 MINOR ENSMUSG00000015242 Nipsnap3a ENSMUST00000188045 ENSMUSP00000140727 TRANSLATION protein_coding - CCDS51177.1 1 245.0 0.0 4.5 12.2 169.3 0.0 -4,0 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000015242 Nipsnap3a ENSMUST00000123780 - NO_TRANSLATION retained_intron ENSMUSG00000039774 Galnt12 ENSMUST00000107744 ENSMUSP00000103373 TRANSLATION protein_coding - - 1 284.0 11.0 6.33 2.0 111.3 0.0 -4,-7 0.1554 3 1.438 MINOR ENSMUSG00000039774 Galnt12 ENSMUST00000045041 ENSMUSP00000045721 TRANSLATION protein_coding - CCDS18158.1 1 576.0 21.0 10.33 1.5 204.0 0.0 0,-5 1.0 7 18.5 PRINCIPAL:1 ENSMUSG00000028575 Eqtn ENSMUST00000107097 ENSMUSP00000102714 TRANSLATION protein_coding - CCDS71422.1 1 296.0 0.0 1.3 0.0 285.5 2.0 0,-3 0.21 2 10.674 MINOR ENSMUSG00000028575 Eqtn ENSMUST00000030309 ENSMUSP00000030309 TRANSLATION protein_coding - CCDS18362.1 1 337.0 0.0 1.3 0.0 307.6 2.0 0,-3 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000032978 Guca2b ENSMUST00000044426 ENSMUSP00000043203 TRANSLATION protein_coding - CCDS18587.1 1 106.0 0.0 2.25 0.1 110.1 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000032978 Guca2b ENSMUST00000106309 ENSMUSP00000101916 TRANSLATION protein_coding - - 3 130.0 0.0 1.5 0.0 100.8 0.0 -2,0 0.0011 1 9.444 MINOR ENSMUSG00000028496 Mllt3 ENSMUST00000126353 ENSMUSP00000129523 TRANSLATION protein_coding - CCDS71418.1 1 138.0 0.0 1.92 0.0 0.0 0.0 -4,-5 0.0083 1 0.0 MINOR ENSMUSG00000028496 Mllt3 ENSMUST00000149357 ENSMUSP00000128366 TRANSLATION protein_coding - CCDS38797.1 1 162.0 0.0 2.75 1.1 0.0 0.0 -4,-5 0.0148 1 0.531 MINOR ENSMUSG00000028496 Mllt3 ENSMUST00000134555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028496 Mllt3 ENSMUST00000128930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028496 Mllt3 ENSMUST00000148059 ENSMUSP00000131095 TRANSLATION protein_coding - - 5 54.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000028496 Mllt3 ENSMUST00000142454 ENSMUSP00000127376 TRANSLATION nonsense_mediated_decay - - 1 73.0 0.0 1.0 0.0 44.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028496 Mllt3 ENSMUST00000078090 ENSMUSP00000077232 TRANSLATION protein_coding - CCDS38796.1 1 569.0 0.0 5.5 9.7 91.4 0.0 -4,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000028496 Mllt3 ENSMUST00000141526 - NO_TRANSLATION retained_intron ENSMUSG00000039852 Rere ENSMUST00000136646 ENSMUSP00000121544 TRANSLATION protein_coding start - 1 199.0 0.0 0.0 0.0 408.7 0.0 -4,-7 0.0013 3 -2.0 MINOR ENSMUSG00000039852 Rere ENSMUST00000129188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039852 Rere ENSMUST00000105680 ENSMUSP00000101305 TRANSLATION protein_coding - - 5 1290.0 8.0 2.95 1.7 1873.8 0.0 -4,-6 0.3148 7 14.212 MINOR ENSMUSG00000039852 Rere ENSMUST00000131600 ENSMUSP00000115385 TRANSLATION protein_coding start/stop - 2 178.0 0.0 0.0 0.0 29.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039852 Rere ENSMUST00000142379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039852 Rere ENSMUST00000137112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039852 Rere ENSMUST00000219467 ENSMUSP00000151591 TRANSLATION protein_coding start/stop - 2 435.0 0.0 0.0 0.0 844.3 0.0 -4,-7 0.0543 4 -2.0 MINOR ENSMUSG00000039852 Rere ENSMUST00000105682 ENSMUSP00000101307 TRANSLATION protein_coding - CCDS38979.1 5 1558.0 8.0 3.85 0.0 1923.6 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000050213 Snip1 ENSMUST00000145733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050213 Snip1 ENSMUST00000052183 ENSMUSP00000060721 TRANSLATION protein_coding - CCDS18636.1 1 383.0 0.0 1.8 0.4 67.7 0.0 -4,-7 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000028834 Trim63 ENSMUST00000134164 - NO_TRANSLATION retained_intron ENSMUSG00000028834 Trim63 ENSMUST00000030638 ENSMUSP00000030638 TRANSLATION protein_coding - - 5 352.0 15.0 3.08 0.1 68.5 0.0 -4,-5 0.3063 4 14.0 ALTERNATIVE:2 ENSMUSG00000028834 Trim63 ENSMUST00000135576 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028834 Trim63 ENSMUST00000105875 ENSMUSP00000101501 TRANSLATION protein_coding - CCDS38914.1 5 355.0 15.0 3.08 1.1 68.5 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:2 ENSMUSG00000096591 Gm13272 ENSMUST00000179425 ENSMUSP00000135918 TRANSLATION protein_coding - CCDS51224.1 - 182.0 0.0 0.4 0.0 94.5 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028367 Txn1 ENSMUST00000030051 ENSMUSP00000030051 TRANSLATION protein_coding - CCDS18207.1 1 105.0 6.0 3.58 24.2 110.7 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000041735 AAdacl4fm3 ENSMUST00000036876 ENSMUSP00000045343 TRANSLATION protein_coding - CCDS38958.1 5 408.0 3.0 3.75 6.4 0.0 0.0 -1,-5 1.0 - 11.0 PRINCIPAL:1 ENSMUSG00000041735 AAdacl4fm3 ENSMUST00000209924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045205 Dpy19l4 ENSMUST00000084892 ENSMUSP00000081954 TRANSLATION protein_coding - CCDS38692.1 1 722.0 0.0 3.062 11.0 700.9 16.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000045205 Dpy19l4 ENSMUST00000148524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045205 Dpy19l4 ENSMUST00000128024 ENSMUSP00000122823 TRANSLATION protein_coding stop - 1 524.0 0.0 2.487 0.0 461.2 14.0 -4,-5 0.0048 - -2.0 MINOR ENSMUSG00000045205 Dpy19l4 ENSMUST00000139385 ENSMUSP00000115537 TRANSLATION protein_coding start - 5 496.0 0.0 2.098 0.0 244.3 11.0 3,-1 0.0032 3 -2.0 MINOR ENSMUSG00000045205 Dpy19l4 ENSMUST00000142005 ENSMUSP00000119923 TRANSLATION nonsense_mediated_decay - - 5 286.0 0.0 1.514 0.0 255.2 4.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000045205 Dpy19l4 ENSMUST00000144941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028322 Exosc3 ENSMUST00000030003 ENSMUSP00000030003 TRANSLATION protein_coding - CCDS18136.1 1 274.0 0.0 4.07 7.9 53.6 0.0 -4,-6 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000028322 Exosc3 ENSMUST00000130843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028322 Exosc3 ENSMUST00000152056 ENSMUSP00000115532 TRANSLATION protein_coding start/stop - 5 145.0 0.0 2.9 0.0 0.0 0.0 -4,-5 0.0036 6 -2.0 MINOR ENSMUSG00000028322 Exosc3 ENSMUST00000143111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028437 Ubap1 ENSMUST00000154529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028437 Ubap1 ENSMUST00000072866 ENSMUSP00000072643 TRANSLATION protein_coding - CCDS51140.1 1 502.0 0.0 3.0 11.0 0.0 0.0 -4,-5 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000028437 Ubap1 ENSMUST00000132235 ENSMUSP00000123491 TRANSLATION protein_coding start/stop - 5 141.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000028437 Ubap1 ENSMUST00000136705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028437 Ubap1 ENSMUST00000108060 ENSMUSP00000103695 TRANSLATION protein_coding - CCDS71361.1 1 441.0 0.0 2.0 1.2 0.0 0.0 -4,-5 0.1534 5 4.062 MINOR ENSMUSG00000044813 Shb ENSMUST00000146236 ENSMUSP00000123176 TRANSLATION protein_coding stop - 3 145.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000044813 Shb ENSMUST00000147926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044813 Shb ENSMUST00000061986 ENSMUSP00000060433 TRANSLATION protein_coding - CCDS51173.1 1 503.0 0.0 2.0 0.4 61.8 0.0 -4,-6 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000044813 Shb ENSMUST00000125599 - NO_TRANSLATION retained_intron ENSMUSG00000044813 Shb ENSMUST00000147448 ENSMUSP00000115331 TRANSLATION protein_coding stop - 2 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044813 Shb ENSMUST00000130107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066137 Gm11487 ENSMUST00000084480 ENSMUSP00000081520 TRANSLATION protein_coding - CCDS51205.1 1 354.0 0.0 0.8 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028649 Macf1 ENSMUST00000147228 ENSMUSP00000115847 TRANSLATION protein_coding stop - 1 2030.0 0.0 20.38 0.0 109.9 0.0 -4,-5 0.0615 54 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000247737 ENSMUSP00000159522 TRANSLATION protein_coding stop - - 350.0 0.0 7.5 0.0 163.2 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000146000 - NO_TRANSLATION retained_intron ENSMUSG00000028649 Macf1 ENSMUST00000238731 ENSMUSP00000158792 TRANSLATION protein_coding - - - 5309.0 16.0 31.246 0.0 1005.4 0.0 -4,-5 0.2597 166 10.8 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000149022 ENSMUSP00000116085 TRANSLATION protein_coding start - 5 349.0 11.0 2.75 0.0 116.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000247736 ENSMUSP00000159521 TRANSLATION protein_coding stop - - 316.0 0.0 8.05 0.0 163.2 0.0 -4,-5 0.0011 11 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000147030 ENSMUSP00000123246 TRANSLATION protein_coding stop - 1 1837.0 0.0 23.88 0.0 192.4 0.0 -4,-5 0.0476 56 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000082108 ENSMUSP00000080755 TRANSLATION protein_coding - CCDS57294.1 1 5328.0 16.0 31.846 2.1 1014.1 0.0 -4,-5 0.5301 168 13.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000125447 ENSMUSP00000153121 TRANSLATION protein_coding stop - 5 1358.0 0.0 2.08 0.0 102.7 0.0 -4,-5 0.0243 22 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000154824 ENSMUSP00000117188 TRANSLATION protein_coding start - 1 544.0 16.0 3.42 0.0 152.4 0.0 -4,-6 0.0 13 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000238555 ENSMUSP00000158828 TRANSLATION protein_coding - - - 5323.0 16.0 31.096 0.0 1005.4 0.0 -4,-6 0.2626 166 10.5 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000106224 ENSMUSP00000101831 TRANSLATION protein_coding - CCDS57295.1 5 7355.0 16.0 31.846 0.0 1249.5 0.0 -4,-5 1.0 215 18.0 PRINCIPAL:1 ENSMUSG00000028649 Macf1 ENSMUST00000151346 ENSMUSP00000114568 TRANSLATION protein_coding start - 5 5333.0 16.0 31.426 0.0 996.8 0.0 -4,-5 0.2668 169 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000106213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028649 Macf1 ENSMUST00000123765 ENSMUSP00000119600 TRANSLATION protein_coding start - 1 452.0 16.0 3.42 0.0 152.4 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000247738 - NO_TRANSLATION retained_intron ENSMUSG00000028649 Macf1 ENSMUST00000140596 ENSMUSP00000117433 TRANSLATION protein_coding start/stop - 5 369.0 0.0 0.816 0.0 75.1 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000238866 ENSMUSP00000158868 TRANSLATION protein_coding stop - - 326.0 0.0 8.55 0.0 163.2 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000028649 Macf1 ENSMUST00000134458 ENSMUSP00000119885 TRANSLATION protein_coding start - 5 4429.0 16.0 14.826 0.0 858.2 0.0 -4,-5 0.1255 144 -2.0 MINOR ENSMUSG00000036073 Galt ENSMUST00000084695 ENSMUSP00000081745 TRANSLATION protein_coding - CCDS38720.1 1 360.0 33.0 9.99 4.9 442.1 1.0 -4,-7 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000036073 Galt ENSMUST00000150908 ENSMUSP00000159491 TRANSLATION nonsense_mediated_decay - - 5 36.0 5.0 1.0 0.0 26.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000036073 Galt ENSMUST00000154275 ENSMUSP00000159493 TRANSLATION protein_coding stop - 5 225.0 21.0 5.91 0.0 299.4 1.0 -4,-7 0.0008 2 -2.0 MINOR ENSMUSG00000036073 Galt ENSMUST00000108038 ENSMUSP00000103673 TRANSLATION protein_coding - - 2 356.0 33.0 9.24 2.2 421.3 1.0 -4,-7 0.4059 6 15.868 MINOR ENSMUSG00000036073 Galt ENSMUST00000135734 - NO_TRANSLATION retained_intron ENSMUSG00000036073 Galt ENSMUST00000130698 ENSMUSP00000159492 TRANSLATION protein_coding - - 1 203.0 21.0 5.33 2.5 249.6 1.0 -4,-7 0.1249 2 0.77 MINOR ENSMUSG00000036073 Galt ENSMUST00000132760 ENSMUSP00000159490 TRANSLATION protein_coding stop - 5 188.0 19.0 5.41 0.0 187.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000036073 Galt ENSMUST00000147719 - NO_TRANSLATION retained_intron ENSMUSG00000036073 Galt ENSMUST00000133106 ENSMUSP00000159494 TRANSLATION protein_coding stop - 5 173.0 11.0 4.91 0.0 222.5 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000036073 Galt ENSMUST00000151490 ENSMUSP00000159489 TRANSLATION nonsense_mediated_decay - - 5 65.0 7.0 2.08 0.0 59.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000038024 Dennd4c ENSMUST00000045512 ENSMUSP00000039860 TRANSLATION protein_coding - - 5 1615.0 4.0 1.942 0.0 313.3 0.0 -4,-6 0.2271 34 12.0 MINOR ENSMUSG00000038024 Dennd4c ENSMUST00000142837 ENSMUSP00000123367 TRANSLATION protein_coding - CCDS51218.2 1 1906.0 4.0 1.942 6.5 313.3 0.0 -4,-6 1.0 40 14.0 PRINCIPAL:3 ENSMUSG00000038024 Dennd4c ENSMUST00000082026 ENSMUSP00000080685 TRANSLATION protein_coding - - 5 1955.0 4.0 1.942 6.4 313.3 0.0 -4,-6 0.7573 39 13.964 ALTERNATIVE:1 ENSMUSG00000038024 Dennd4c ENSMUST00000128710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001604 Tcea3 ENSMUST00000102533 ENSMUSP00000099592 TRANSLATION protein_coding - CCDS18803.1 1 347.0 4.0 6.65 8.3 248.8 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000001604 Tcea3 ENSMUST00000143942 ENSMUSP00000122718 TRANSLATION protein_coding stop - 3 183.0 0.0 2.9 0.0 50.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001604 Tcea3 ENSMUST00000136812 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028737 Aldh4a1 ENSMUST00000146309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028737 Aldh4a1 ENSMUST00000124987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028737 Aldh4a1 ENSMUST00000039818 ENSMUSP00000043821 TRANSLATION protein_coding - CCDS18848.1 1 562.0 40.0 12.5 9.6 343.2 0.0 -4,0 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000070904 Ifna4 ENSMUST00000094973 ENSMUSP00000092581 TRANSLATION protein_coding - CCDS18346.1 - 186.0 3.0 1.0 2.5 190.4 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000012126 Ubxn11 ENSMUST00000127632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012126 Ubxn11 ENSMUST00000156750 ENSMUSP00000117081 TRANSLATION protein_coding stop - 3 173.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000012126 Ubxn11 ENSMUST00000123281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012126 Ubxn11 ENSMUST00000135287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012126 Ubxn11 ENSMUST00000156323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012126 Ubxn11 ENSMUST00000151407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012126 Ubxn11 ENSMUST00000151113 ENSMUSP00000122892 TRANSLATION protein_coding start/stop - 3 174.0 0.0 0.16 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000012126 Ubxn11 ENSMUST00000139616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012126 Ubxn11 ENSMUST00000142442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012126 Ubxn11 ENSMUST00000074690 ENSMUSP00000074255 TRANSLATION protein_coding - CCDS18763.1 1 484.0 0.0 0.52 0.7 87.2 0.0 -4,-7 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000012126 Ubxn11 ENSMUST00000131329 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012126 Ubxn11 ENSMUST00000070246 ENSMUSP00000064030 TRANSLATION protein_coding - - 5 366.0 0.0 0.52 0.0 87.2 0.0 -4,-7 0.0868 3 8.0 ALTERNATIVE:2 ENSMUSG00000028713 Cyp4b1 ENSMUST00000135569 ENSMUSP00000142279 TRANSLATION nonsense_mediated_decay start - 1 208.0 9.0 5.0 0.0 152.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000028713 Cyp4b1 ENSMUST00000145841 ENSMUSP00000118323 TRANSLATION protein_coding start/stop - 5 375.0 22.0 9.625 0.0 332.5 0.0 -4,-5 0.0016 6 -2.0 MINOR ENSMUSG00000028713 Cyp4b1 ENSMUST00000102707 ENSMUSP00000099768 TRANSLATION protein_coding - CCDS18493.1 1 511.0 30.0 12.5 1.9 432.0 0.0 -2,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000028713 Cyp4b1 ENSMUST00000143237 - NO_TRANSLATION retained_intron ENSMUSG00000040183 Ankrd6 ENSMUST00000140837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040183 Ankrd6 ENSMUST00000084749 ENSMUSP00000081801 TRANSLATION protein_coding - CCDS18018.1 5 712.0 0.0 7.25 0.4 134.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040183 Ankrd6 ENSMUST00000149650 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040183 Ankrd6 ENSMUST00000084748 ENSMUSP00000081800 TRANSLATION protein_coding - - 5 677.0 0.0 6.75 0.0 112.5 0.0 -4,-5 0.0456 - 9.666 MINOR ENSMUSG00000040183 Ankrd6 ENSMUST00000084750 ENSMUSP00000081802 TRANSLATION protein_coding - CCDS18018.1 5 712.0 0.0 7.25 0.4 134.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040183 Ankrd6 ENSMUST00000035719 ENSMUSP00000041300 TRANSLATION protein_coding - CCDS18018.1 1 712.0 0.0 7.25 0.4 134.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040183 Ankrd6 ENSMUST00000108166 ENSMUSP00000103801 TRANSLATION protein_coding - - 5 648.0 0.0 5.5 0.0 100.7 0.0 -4,-5 0.0014 - 6.462 MINOR ENSMUSG00000040183 Ankrd6 ENSMUST00000128496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047945 Marcksl1 ENSMUST00000062356 ENSMUSP00000055637 TRANSLATION protein_coding - CCDS18695.1 1 200.0 0.0 0.0 6.2 77.8 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000028603 Scp2 ENSMUST00000030340 ENSMUSP00000030340 TRANSLATION protein_coding - CCDS18446.1 1 547.0 0.0 14.51 5.9 231.4 0.0 -4,-1 1.0 21 13.96 PRINCIPAL:1 ENSMUSG00000028603 Scp2 ENSMUST00000130776 ENSMUSP00000123630 TRANSLATION protein_coding stop - 3 110.0 0.0 3.0 0.0 52.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000028603 Scp2 ENSMUST00000123792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028603 Scp2 ENSMUST00000149106 ENSMUSP00000121673 TRANSLATION protein_coding stop - 5 231.0 0.0 6.43 0.0 0.0 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000028603 Scp2 ENSMUST00000145721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028603 Scp2 ENSMUST00000135379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028603 Scp2 ENSMUST00000143340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028603 Scp2 ENSMUST00000122878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028603 Scp2 ENSMUST00000106701 ENSMUSP00000102312 TRANSLATION protein_coding - - 1 143.0 0.0 4.08 6.0 106.8 0.0 -4,-7 0.4914 13 2.0 MINOR ENSMUSG00000046623 Gjb4 ENSMUST00000106090 ENSMUSP00000101696 TRANSLATION protein_coding - CCDS18669.1 5 266.0 0.0 0.64 8.9 266.4 4.0 -1,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046623 Gjb4 ENSMUST00000060419 ENSMUSP00000053307 TRANSLATION protein_coding - CCDS18669.1 1 266.0 0.0 0.64 8.9 266.4 4.0 -1,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071000 Or13c7 ENSMUST00000107860 ENSMUSP00000103492 TRANSLATION protein_coding - CCDS18115.1 5 319.0 0.0 1.0 12.5 197.5 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071000 Or13c7 ENSMUST00000095108 ENSMUSP00000092726 TRANSLATION protein_coding - CCDS18115.1 - 319.0 0.0 1.0 12.5 197.5 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054428 Atp5if1 ENSMUST00000152993 ENSMUSP00000133099 TRANSLATION protein_coding - - 2 74.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0315 4 6.0 MINOR ENSMUSG00000054428 Atp5if1 ENSMUST00000067496 ENSMUSP00000064282 TRANSLATION protein_coding - CCDS18727.1 1 106.0 0.0 1.75 11.9 0.0 0.0 -4,0 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000054428 Atp5if1 ENSMUST00000145795 - NO_TRANSLATION retained_intron ENSMUSG00000028410 Dnaja1 ENSMUST00000164233 ENSMUSP00000129730 TRANSLATION protein_coding - CCDS18049.1 5 397.0 8.0 7.51 36.9 303.2 0.0 -4,-5 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000028410 Dnaja1 ENSMUST00000030118 ENSMUSP00000030118 TRANSLATION protein_coding - CCDS18049.1 1 397.0 8.0 7.51 36.9 303.2 0.0 -4,-5 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000028410 Dnaja1 ENSMUST00000139406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028410 Dnaja1 ENSMUST00000129204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028410 Dnaja1 ENSMUST00000125442 ENSMUSP00000116601 TRANSLATION protein_coding stop - 2 208.0 8.0 3.88 0.0 152.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000028410 Dnaja1 ENSMUST00000126020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028410 Dnaja1 ENSMUST00000137246 ENSMUSP00000118294 TRANSLATION protein_coding stop - 5 278.0 8.0 5.81 1.1 258.1 0.0 -4,-5 0.0055 13 -2.0 MINOR ENSMUSG00000028410 Dnaja1 ENSMUST00000137476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028410 Dnaja1 ENSMUST00000149794 ENSMUSP00000121461 TRANSLATION protein_coding stop - 5 128.0 0.0 2.175 0.0 93.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000028410 Dnaja1 ENSMUST00000148976 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058006 Mdn1 ENSMUST00000149941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058006 Mdn1 ENSMUST00000133403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058006 Mdn1 ENSMUST00000150934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058006 Mdn1 ENSMUST00000125323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058006 Mdn1 ENSMUST00000138577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058006 Mdn1 ENSMUST00000124361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058006 Mdn1 ENSMUST00000151626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058006 Mdn1 ENSMUST00000124657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058006 Mdn1 ENSMUST00000071642 ENSMUSP00000071569 TRANSLATION protein_coding - - 5 5589.0 15.0 20.861 0.0 384.2 0.0 -4,-5 0.8156 75 14.0 ALTERNATIVE:2 ENSMUSG00000058006 Mdn1 ENSMUST00000136608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058006 Mdn1 ENSMUST00000178134 ENSMUSP00000136222 TRANSLATION protein_coding - CCDS57264.1 5 5582.0 15.0 20.861 0.0 384.2 0.0 -4,-5 1.0 75 14.0 PRINCIPAL:4 ENSMUSG00000028312 Smc2 ENSMUST00000131163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028312 Smc2 ENSMUST00000102915 ENSMUSP00000099979 TRANSLATION protein_coding - CCDS18180.1 1 1191.0 7.0 15.197 7.9 261.6 0.0 -4,-5 1.0 40 20.0 PRINCIPAL:1 ENSMUSG00000028312 Smc2 ENSMUST00000117280 ENSMUSP00000113940 TRANSLATION protein_coding - CCDS18180.1 1 1191.0 7.0 15.197 7.9 261.6 0.0 -4,-5 1.0 40 20.0 PRINCIPAL:1 ENSMUSG00000028312 Smc2 ENSMUST00000142227 ENSMUSP00000114228 TRANSLATION protein_coding stop - 1 471.0 7.0 5.665 0.0 120.1 0.0 -4,-5 0.0 16 -2.0 MINOR ENSMUSG00000028312 Smc2 ENSMUST00000146787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028600 Podn ENSMUST00000124265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028600 Podn ENSMUST00000130026 ENSMUSP00000123184 TRANSLATION protein_coding start - 5 205.0 0.0 3.5 0.0 77.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000028600 Podn ENSMUST00000147597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028600 Podn ENSMUST00000106708 ENSMUSP00000102319 TRANSLATION protein_coding - CCDS18445.1 1 611.0 2.0 10.68 0.0 222.0 0.0 3,-2 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000028600 Podn ENSMUST00000106709 ENSMUSP00000102320 TRANSLATION protein_coding - CCDS18445.1 1 611.0 2.0 10.68 0.0 222.0 0.0 3,-2 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000028600 Podn ENSMUST00000145491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028600 Podn ENSMUST00000146851 ENSMUSP00000121478 TRANSLATION protein_coding start - 1 409.0 2.0 5.5 0.0 106.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000028651 Ppie ENSMUST00000137778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028651 Ppie ENSMUST00000030404 ENSMUSP00000030404 TRANSLATION protein_coding - CCDS18610.1 1 301.0 8.0 2.212 34.9 229.0 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028651 Ppie ENSMUST00000136466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028651 Ppie ENSMUST00000126558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073733 Cplane2 ENSMUST00000151475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073733 Cplane2 ENSMUST00000125175 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073733 Cplane2 ENSMUST00000097813 ENSMUSP00000095422 TRANSLATION protein_coding - CCDS38937.1 5 258.0 19.0 5.0 6.0 38.3 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000070609 Aadacl4 ENSMUST00000094510 ENSMUSP00000092087 TRANSLATION protein_coding - CCDS38956.1 1 407.0 4.0 3.75 5.4 0.0 0.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073721 Pramel15 ENSMUST00000121109 ENSMUSP00000112488 TRANSLATION protein_coding - CCDS51364.1 5 477.0 0.0 2.0 0.1 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028407 Smim27 ENSMUST00000207780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028407 Smim27 ENSMUST00000129758 ENSMUSP00000146567 TRANSLATION protein_coding - - 1 49.0 0.0 1.3 0.1 0.0 0.0 -1,-5 0.6803 - 6.0 PRINCIPAL:1 ENSMUSG00000033326 Kdm4a ENSMUST00000097911 ENSMUSP00000095524 TRANSLATION protein_coding - CCDS51282.1 1 1064.0 15.0 7.5 8.5 364.4 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000033326 Kdm4a ENSMUST00000106403 ENSMUSP00000102011 TRANSLATION protein_coding - CCDS51282.1 1 1064.0 15.0 7.5 8.5 364.4 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000033326 Kdm4a ENSMUST00000152808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033326 Kdm4a ENSMUST00000164821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033326 Kdm4a ENSMUST00000050288 ENSMUSP00000062910 TRANSLATION protein_coding - CCDS18545.1 1 1033.0 15.0 7.5 0.0 364.4 0.0 -4,-5 0.3145 2 18.0 MINOR ENSMUSG00000033326 Kdm4a ENSMUST00000106406 ENSMUSP00000102014 TRANSLATION protein_coding - CCDS51282.1 1 1064.0 15.0 7.5 8.5 364.4 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000044518 Foxe3 ENSMUST00000050940 ENSMUSP00000050445 TRANSLATION protein_coding - CCDS18483.1 - 288.0 0.0 0.6 0.4 122.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000089873 Mup13 ENSMUST00000072678 ENSMUSP00000072466 TRANSLATION protein_coding - CCDS84743.1 2 180.0 0.0 4.88 0.0 111.2 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000089873 Mup13 ENSMUST00000098042 ENSMUSP00000095650 TRANSLATION protein_coding - - 5 235.0 0.0 4.85 0.0 111.2 0.0 4,-1 0.1269 - 7.94 ALTERNATIVE:2 ENSMUSG00000050890 Pdik1l ENSMUST00000145006 ENSMUSP00000118116 TRANSLATION protein_coding stop - 5 191.0 10.0 0.25 0.0 118.9 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000050890 Pdik1l ENSMUST00000105876 ENSMUSP00000101502 TRANSLATION protein_coding - CCDS18768.1 1 341.0 19.0 1.2 36.0 173.4 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000050890 Pdik1l ENSMUST00000105877 ENSMUSP00000101503 TRANSLATION protein_coding - - 5 417.0 19.0 1.2 0.0 173.4 0.0 -4,-5 0.0572 2 18.0 MINOR ENSMUSG00000050890 Pdik1l ENSMUST00000142504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050890 Pdik1l ENSMUST00000061234 ENSMUSP00000060381 TRANSLATION protein_coding - CCDS18768.1 1 341.0 19.0 1.2 36.0 173.4 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000050890 Pdik1l ENSMUST00000127857 ENSMUSP00000117719 TRANSLATION protein_coding stop - 1 155.0 9.0 0.5 0.0 42.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000003731 Kpna6 ENSMUST00000146215 - NO_TRANSLATION retained_intron ENSMUSG00000003731 Kpna6 ENSMUST00000146361 - NO_TRANSLATION retained_intron ENSMUSG00000003731 Kpna6 ENSMUST00000102590 ENSMUSP00000099650 TRANSLATION protein_coding - CCDS18701.1 1 536.0 0.0 11.8 32.7 463.0 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:4 ENSMUSG00000003731 Kpna6 ENSMUST00000126010 ENSMUSP00000114265 TRANSLATION protein_coding stop - 3 88.0 0.0 1.3 0.0 74.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003731 Kpna6 ENSMUST00000138916 - NO_TRANSLATION retained_intron ENSMUSG00000003731 Kpna6 ENSMUST00000003828 ENSMUSP00000003828 TRANSLATION protein_coding - - 5 533.0 0.0 11.8 29.7 463.0 0.0 -4,-5 0.8365 8 11.62 ALTERNATIVE:1 ENSMUSG00000037157 Il22ra1 ENSMUST00000102546 ENSMUSP00000099605 TRANSLATION protein_coding - CCDS18789.1 1 581.0 3.0 5.0 7.3 115.7 0.0 1,-4 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000028890 Mtf1 ENSMUST00000030723 ENSMUSP00000030723 TRANSLATION protein_coding - CCDS18627.1 1 675.0 24.0 3.653 1.1 120.3 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000028890 Mtf1 ENSMUST00000138807 ENSMUSP00000119352 TRANSLATION protein_coding stop - 5 142.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028890 Mtf1 ENSMUST00000147452 - NO_TRANSLATION retained_intron ENSMUSG00000028890 Mtf1 ENSMUST00000106193 ENSMUSP00000101799 TRANSLATION protein_coding - CCDS18627.1 5 675.0 24.0 3.653 1.1 120.3 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000028890 Mtf1 ENSMUST00000175875 ENSMUSP00000135260 TRANSLATION protein_coding stop - 3 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0128 - -2.0 MINOR ENSMUSG00000044288 Cnr1 ENSMUST00000084736 ENSMUSP00000081787 TRANSLATION protein_coding - CCDS18025.1 2 473.0 0.0 0.8 20.7 150.4 6.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000044288 Cnr1 ENSMUST00000057188 ENSMUSP00000055797 TRANSLATION protein_coding - CCDS18025.1 1 473.0 0.0 0.8 20.7 150.4 6.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000044288 Cnr1 ENSMUST00000133462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028634 Hivep3 ENSMUST00000141605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028634 Hivep3 ENSMUST00000166542 ENSMUSP00000130249 TRANSLATION protein_coding - CCDS38863.1 1 2348.0 17.0 1.75 0.0 79.1 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000028634 Hivep3 ENSMUST00000136547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028634 Hivep3 ENSMUST00000084306 ENSMUSP00000081330 TRANSLATION protein_coding start - - 116.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0006 - -2.0 MINOR ENSMUSG00000028634 Hivep3 ENSMUST00000106307 ENSMUSP00000101914 TRANSLATION protein_coding - CCDS38863.1 1 2348.0 17.0 1.75 0.0 79.1 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000028634 Hivep3 ENSMUST00000123698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028634 Hivep3 ENSMUST00000143837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028634 Hivep3 ENSMUST00000144907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028634 Hivep3 ENSMUST00000125069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028634 Hivep3 ENSMUST00000227491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028635 Edn2 ENSMUST00000030384 ENSMUSP00000030384 TRANSLATION protein_coding - CCDS38864.1 1 175.0 0.0 0.6 3.7 0.0 0.0 2,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000059343 Aldoart1 ENSMUST00000078617 ENSMUSP00000077687 TRANSLATION protein_coding - CCDS57279.1 - 419.0 14.0 1.0 8.5 616.9 0.0 -4,-2 0.4966 6 18.836 MINOR ENSMUSG00000059343 Aldoart1 ENSMUST00000179234 ENSMUSP00000136908 TRANSLATION protein_coding - - - 364.0 14.0 1.0 36.9 616.9 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000028356 Ambp ENSMUST00000142901 ENSMUSP00000118965 TRANSLATION protein_coding stop - 3 47.0 0.0 0.73 0.0 0.0 0.0 3,-2 0.0008 - -2.0 MINOR ENSMUSG00000028356 Ambp ENSMUST00000030041 ENSMUSP00000030041 TRANSLATION protein_coding - CCDS18248.1 1 349.0 0.0 7.119 3.3 225.6 0.0 3,-2 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000049410 Zfp683 ENSMUST00000105884 ENSMUSP00000101508 TRANSLATION protein_coding - - 5 458.0 15.0 1.4 0.0 64.9 0.0 -4,-5 0.7768 - 18.0 PRINCIPAL:1 ENSMUSG00000042608 Stk40 ENSMUST00000139524 ENSMUSP00000121674 TRANSLATION protein_coding stop - 5 61.0 0.0 0.93 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000042608 Stk40 ENSMUST00000134369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042608 Stk40 ENSMUST00000094761 ENSMUSP00000092354 TRANSLATION protein_coding - CCDS51300.1 1 435.0 0.0 8.055 30.5 124.1 1.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000042608 Stk40 ENSMUST00000127092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042608 Stk40 ENSMUST00000139188 ENSMUSP00000114793 TRANSLATION protein_coding stop - 3 164.0 0.0 3.43 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042608 Stk40 ENSMUST00000116286 ENSMUSP00000111990 TRANSLATION protein_coding - CCDS51299.1 1 449.0 0.0 8.055 0.0 124.1 1.0 -4,-2 0.2405 1 12.0 MINOR ENSMUSG00000006218 Fam131c ENSMUST00000006380 ENSMUSP00000006380 TRANSLATION protein_coding - CCDS38938.1 1 273.0 0.0 1.2 0.4 151.3 0.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000028309 Rnf20 ENSMUST00000029989 ENSMUSP00000029989 TRANSLATION protein_coding - CCDS18178.1 1 973.0 7.0 1.109 14.0 27.4 0.0 -4,-5 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000028309 Rnf20 ENSMUST00000167496 ENSMUSP00000128546 TRANSLATION protein_coding - CCDS18178.1 1 973.0 7.0 1.109 14.0 27.4 0.0 -4,-5 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000028309 Rnf20 ENSMUST00000138490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028309 Rnf20 ENSMUST00000156314 ENSMUSP00000118293 TRANSLATION protein_coding stop - 1 606.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0036 14 -2.0 MINOR ENSMUSG00000028309 Rnf20 ENSMUST00000146547 ENSMUSP00000120668 TRANSLATION protein_coding stop - 3 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 5 -2.0 MINOR ENSMUSG00000028309 Rnf20 ENSMUST00000131962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028309 Rnf20 ENSMUST00000126675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028309 Rnf20 ENSMUST00000140341 ENSMUSP00000121334 TRANSLATION protein_coding stop - 2 174.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 7 -2.0 MINOR ENSMUSG00000028309 Rnf20 ENSMUST00000132782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028309 Rnf20 ENSMUST00000149862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041235 Chd7 ENSMUST00000039267 ENSMUSP00000043903 TRANSLATION protein_coding - CCDS38689.1 5 2986.0 0.0 12.185 0.4 495.4 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000041235 Chd7 ENSMUST00000129655 ENSMUSP00000123241 TRANSLATION protein_coding stop - 3 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0285 - -2.0 MINOR ENSMUSG00000041235 Chd7 ENSMUST00000130709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041235 Chd7 ENSMUST00000170391 ENSMUSP00000127007 TRANSLATION protein_coding - - 5 941.0 0.0 2.0 1.0 67.6 0.0 -4,-5 0.0172 - 0.0 MINOR ENSMUSG00000041235 Chd7 ENSMUST00000222546 ENSMUSP00000152166 TRANSLATION protein_coding start/stop - 3 194.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041235 Chd7 ENSMUST00000127476 ENSMUSP00000118711 TRANSLATION protein_coding stop - 1 631.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0045 - -2.0 MINOR ENSMUSG00000041235 Chd7 ENSMUST00000170457 - NO_TRANSLATION retained_intron ENSMUSG00000041235 Chd7 ENSMUST00000051558 ENSMUSP00000059079 TRANSLATION protein_coding - CCDS38689.1 5 2986.0 0.0 12.185 0.4 495.4 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000052520 Cyp2j5 ENSMUST00000030299 ENSMUSP00000030299 TRANSLATION protein_coding - CCDS18371.1 1 501.0 31.0 8.8 6.6 464.2 0.0 1,-4 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000085933 Tmem61 ENSMUST00000239042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000085933 Tmem61 ENSMUST00000239122 - NO_TRANSLATION retained_intron ENSMUSG00000085933 Tmem61 ENSMUST00000148907 ENSMUSP00000159005 TRANSLATION nonsense_mediated_decay - - 2 135.0 0.0 0.0 0.0 166.6 5.0 -4,-7 0.0105 - -2.0 MINOR ENSMUSG00000085933 Tmem61 ENSMUST00000238833 ENSMUSP00000158903 TRANSLATION protein_coding - - - 197.0 0.0 0.0 0.3 254.2 5.0 -4,-7 0.7472 - 6.0 PRINCIPAL:1 ENSMUSG00000085933 Tmem61 ENSMUST00000239070 ENSMUSP00000159161 TRANSLATION nonsense_mediated_decay - - - 123.0 0.0 0.0 0.0 163.4 5.0 -4,-7 0.0105 - -2.0 MINOR ENSMUSG00000085933 Tmem61 ENSMUST00000239147 ENSMUSP00000159035 TRANSLATION protein_coding - - - 209.0 0.0 0.0 0.0 147.9 5.0 0,-3 0.0189 - 0.0 MINOR ENSMUSG00000028854 Slc9a1 ENSMUST00000132864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028854 Slc9a1 ENSMUST00000156079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028854 Slc9a1 ENSMUST00000141658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028854 Slc9a1 ENSMUST00000140681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028854 Slc9a1 ENSMUST00000030669 ENSMUSP00000030669 TRANSLATION protein_coding - CCDS38903.1 1 820.0 0.0 8.05 6.6 398.3 0.0 0,-3 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000028681 Ptch2 ENSMUST00000135133 - NO_TRANSLATION retained_intron ENSMUSG00000028681 Ptch2 ENSMUST00000030443 ENSMUSP00000030443 TRANSLATION protein_coding - CCDS18526.1 1 1182.0 0.0 14.91 0.4 260.5 9.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028681 Ptch2 ENSMUST00000156989 - NO_TRANSLATION retained_intron ENSMUSG00000028681 Ptch2 ENSMUST00000137209 ENSMUSP00000114461 TRANSLATION nonsense_mediated_decay start - 3 170.0 0.0 2.95 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000028681 Ptch2 ENSMUST00000123226 - NO_TRANSLATION retained_intron ENSMUSG00000028681 Ptch2 ENSMUST00000144620 ENSMUSP00000122548 TRANSLATION nonsense_mediated_decay - - 1 337.0 0.0 5.4 0.0 0.0 2.0 -4,-7 0.0029 - -2.0 MINOR ENSMUSG00000096011 Ifna15 ENSMUST00000102809 ENSMUSP00000099873 TRANSLATION protein_coding - CCDS18319.1 - 190.0 0.0 1.0 3.2 210.6 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000028755 Cda ENSMUST00000030535 ENSMUSP00000030535 TRANSLATION protein_coding - CCDS18826.1 1 146.0 5.0 3.5 10.3 59.3 0.0 -4,-6 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000028755 Cda ENSMUST00000144986 - NO_TRANSLATION retained_intron ENSMUSG00000028318 Polr1e ENSMUST00000054723 ENSMUSP00000059941 TRANSLATION protein_coding start - 5 407.0 0.0 6.3495 0.0 336.8 0.0 -1,-5 0.1177 9 -2.0 MINOR ENSMUSG00000028318 Polr1e ENSMUST00000149284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028318 Polr1e ENSMUST00000029999 ENSMUSP00000029999 TRANSLATION protein_coding - CCDS71378.1 1 482.0 0.0 6.3495 0.0 318.8 0.0 -4,-5 0.1804 10 6.0 MINOR ENSMUSG00000028318 Polr1e ENSMUST00000133157 ENSMUSP00000121007 TRANSLATION protein_coding - CCDS18131.1 1 434.0 0.0 6.3495 0.4 336.8 0.0 -4,-5 1.0 10 8.0 PRINCIPAL:1 ENSMUSG00000028318 Polr1e ENSMUST00000107814 ENSMUSP00000103444 TRANSLATION protein_coding - - 1 393.0 0.0 5.3495 0.0 302.7 0.0 -4,-5 0.0031 9 4.002 MINOR ENSMUSG00000028318 Polr1e ENSMUST00000150663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028318 Polr1e ENSMUST00000153252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028927 Padi2 ENSMUST00000030765 ENSMUSP00000030765 TRANSLATION protein_coding - CCDS18857.1 1 673.0 13.0 15.25 0.0 911.7 0.0 -4,-2 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000028927 Padi2 ENSMUST00000130958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028927 Padi2 ENSMUST00000148160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029055 Plch2 ENSMUST00000105631 ENSMUSP00000101256 TRANSLATION protein_coding - CCDS71533.1 5 1501.0 15.0 10.726 0.0 512.5 0.0 -4,-2 0.5104 18 14.0 ALTERNATIVE:2 ENSMUSG00000029055 Plch2 ENSMUST00000176620 - NO_TRANSLATION retained_intron ENSMUSG00000029055 Plch2 ENSMUST00000175982 ENSMUSP00000135209 TRANSLATION protein_coding start - 5 1250.0 15.0 8.52 0.0 411.0 0.0 -4,-7 0.0702 14 -2.0 MINOR ENSMUSG00000029055 Plch2 ENSMUST00000127661 - NO_TRANSLATION retained_intron ENSMUSG00000029055 Plch2 ENSMUST00000135665 ENSMUSP00000118292 TRANSLATION protein_coding - - 5 1396.0 15.0 10.726 0.0 513.2 0.0 -4,-5 0.3643 18 14.0 ALTERNATIVE:2 ENSMUSG00000029055 Plch2 ENSMUST00000126098 ENSMUSP00000115440 TRANSLATION protein_coding stop - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029055 Plch2 ENSMUST00000186598 ENSMUSP00000141152 TRANSLATION protein_coding - - 5 493.0 5.0 2.72 0.0 53.1 0.0 -4,-5 0.0 10 0.0 MINOR ENSMUSG00000029055 Plch2 ENSMUST00000176194 ENSMUSP00000134750 TRANSLATION protein_coding - - 5 1137.0 15.0 10.726 0.0 513.2 0.0 -4,-5 0.3017 21 14.0 ALTERNATIVE:2 ENSMUSG00000029055 Plch2 ENSMUST00000145662 ENSMUSP00000119864 TRANSLATION protein_coding - - 1 599.0 7.0 6.966 0.0 316.9 0.0 -4,-2 0.0 12 1.866 MINOR ENSMUSG00000029055 Plch2 ENSMUST00000124517 ENSMUSP00000122139 TRANSLATION protein_coding start - 5 199.0 4.0 1.49 0.0 44.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029055 Plch2 ENSMUST00000139976 ENSMUSP00000122704 TRANSLATION protein_coding - CCDS38990.2 1 1238.0 15.0 10.726 0.0 512.5 0.0 -4,-2 1.0 21 14.0 PRINCIPAL:2 ENSMUSG00000029055 Plch2 ENSMUST00000131173 ENSMUSP00000118629 TRANSLATION protein_coding stop - 3 111.0 0.0 0.9 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000028792 Ak2 ENSMUST00000141982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028792 Ak2 ENSMUST00000152762 ENSMUSP00000122284 TRANSLATION nonsense_mediated_decay start - 3 72.0 7.0 1.75 0.0 80.2 0.0 -4,-5 0.0005 5 -2.0 MINOR ENSMUSG00000028792 Ak2 ENSMUST00000030583 ENSMUSP00000030583 TRANSLATION protein_coding - CCDS18680.1 1 239.0 7.0 5.764 16.2 266.7 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:4 ENSMUSG00000028792 Ak2 ENSMUST00000102604 ENSMUSP00000099664 TRANSLATION protein_coding - CCDS18679.1 1 232.0 7.0 5.5 14.7 266.7 0.0 -4,-5 0.9694 12 17.076 ALTERNATIVE:1 ENSMUSG00000087385 Frg2f1 ENSMUST00000079611 ENSMUSP00000078560 TRANSLATION protein_coding - CCDS51291.1 1 227.0 0.0 0.4 0.0 111.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000087385 Frg2f1 ENSMUST00000137671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087385 Frg2f1 ENSMUST00000177165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087385 Frg2f1 ENSMUST00000149305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028528 Dnajc6 ENSMUST00000106929 ENSMUSP00000102542 TRANSLATION protein_coding - CCDS18395.1 1 900.0 0.0 10.65 5.3 97.2 0.0 -4,-5 0.9005 18 9.83 ALTERNATIVE:1 ENSMUSG00000028528 Dnajc6 ENSMUST00000106930 ENSMUSP00000102543 TRANSLATION protein_coding - CCDS18395.1 1 900.0 0.0 10.65 5.3 97.2 0.0 -4,-5 0.9005 18 9.83 ALTERNATIVE:1 ENSMUSG00000028528 Dnajc6 ENSMUST00000038207 ENSMUSP00000044251 TRANSLATION protein_coding - CCDS51237.1 1 938.0 0.0 10.65 0.1 97.2 0.0 -4,-5 0.3057 19 8.0 MINOR ENSMUSG00000028528 Dnajc6 ENSMUST00000154120 ENSMUSP00000114840 TRANSLATION protein_coding stop - 5 514.0 0.0 7.05 0.0 97.2 0.0 -4,-1 0.0254 14 -2.0 MINOR ENSMUSG00000028528 Dnajc6 ENSMUST00000106933 ENSMUSP00000102546 TRANSLATION protein_coding - CCDS51238.1 1 968.0 0.0 10.65 5.7 97.2 0.0 -4,-6 1.0 18 10.0 PRINCIPAL:4 ENSMUSG00000028528 Dnajc6 ENSMUST00000094953 ENSMUSP00000092560 TRANSLATION protein_coding - CCDS18395.1 1 900.0 0.0 10.65 5.3 97.2 0.0 -4,-5 0.9005 18 9.83 ALTERNATIVE:1 ENSMUSG00000028528 Dnajc6 ENSMUST00000149047 ENSMUSP00000119542 TRANSLATION protein_coding stop - 3 194.0 0.0 3.3 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000028528 Dnajc6 ENSMUST00000146489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078487 Ankrd65 ENSMUST00000165000 ENSMUSP00000129173 TRANSLATION protein_coding - - 5 364.0 0.0 2.8 0.1 146.6 0.0 -4,-5 0.762 - 12.0 PRINCIPAL:1 ENSMUSG00000049972 Skint9 ENSMUST00000058605 ENSMUSP00000052670 TRANSLATION protein_coding - CCDS38839.1 1 319.0 0.0 1.0495 0.0 0.0 0.0 0,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078509 Pramel14 ENSMUST00000105762 ENSMUSP00000101388 TRANSLATION protein_coding - CCDS38951.1 5 475.0 0.0 1.9 0.1 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028719 Cmpk1 ENSMUST00000030491 ENSMUSP00000030491 TRANSLATION protein_coding - CCDS18484.1 1 227.0 8.0 5.25 9.8 151.6 0.0 -4,-2 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000028719 Cmpk1 ENSMUST00000131014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028719 Cmpk1 ENSMUST00000133066 ENSMUSP00000118198 TRANSLATION nonsense_mediated_decay - - 3 62.0 7.0 1.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000028719 Cmpk1 ENSMUST00000129317 ENSMUSP00000115414 TRANSLATION nonsense_mediated_decay start - 2 42.0 7.0 1.066 0.0 0.0 0.0 0,-3 0.0035 - -2.0 MINOR ENSMUSG00000034401 Spata6 ENSMUST00000132802 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034401 Spata6 ENSMUST00000038868 ENSMUSP00000036964 TRANSLATION protein_coding - CCDS38836.1 1 488.0 0.0 3.275 9.1 185.0 0.0 -4,-7 1.0 8 11.0 PRINCIPAL:4 ENSMUSG00000034401 Spata6 ENSMUST00000153746 ENSMUSP00000114610 TRANSLATION protein_coding - - 1 176.0 0.0 3.275 0.0 185.0 0.0 -4,-7 0.0207 2 8.0 MINOR ENSMUSG00000034401 Spata6 ENSMUST00000125999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034401 Spata6 ENSMUST00000122820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034401 Spata6 ENSMUST00000070513 ENSMUSP00000069435 TRANSLATION protein_coding stop - 3 93.0 0.0 1.05 0.0 99.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000034401 Spata6 ENSMUST00000137072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034401 Spata6 ENSMUST00000084354 ENSMUSP00000081383 TRANSLATION protein_coding - - 5 472.0 0.0 3.275 8.0 185.0 0.0 -4,-7 0.7585 8 10.592 ALTERNATIVE:1 ENSMUSG00000034401 Spata6 ENSMUST00000143879 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034401 Spata6 ENSMUST00000140366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034401 Spata6 ENSMUST00000149834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034401 Spata6 ENSMUST00000123718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034401 Spata6 ENSMUST00000134000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034401 Spata6 ENSMUST00000156179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050608 Micos10 ENSMUST00000143971 ENSMUSP00000117583 TRANSLATION protein_coding - CCDS51339.1 1 76.0 0.0 0.9 32.3 84.4 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000050608 Micos10 ENSMUST00000123488 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050608 Micos10 ENSMUST00000154642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050608 Micos10 ENSMUST00000063040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028741 Mrto4 ENSMUST00000128239 - NO_TRANSLATION retained_intron ENSMUSG00000028741 Mrto4 ENSMUST00000123968 - NO_TRANSLATION retained_intron ENSMUSG00000028741 Mrto4 ENSMUST00000131052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028741 Mrto4 ENSMUST00000155257 ENSMUSP00000121453 TRANSLATION protein_coding stop - 3 61.0 0.0 1.75 0.0 43.4 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000028741 Mrto4 ENSMUST00000102503 ENSMUSP00000099561 TRANSLATION protein_coding - CCDS71505.1 1 239.0 0.0 5.73 7.5 73.8 0.0 -4,-5 1.0 11 10.0 PRINCIPAL:4 ENSMUSG00000028741 Mrto4 ENSMUST00000139749 - NO_TRANSLATION retained_intron ENSMUSG00000028741 Mrto4 ENSMUST00000030513 ENSMUSP00000030513 TRANSLATION protein_coding - CCDS18845.1 1 238.0 0.0 5.73 7.1 73.8 0.0 -4,-5 0.9653 11 9.876 ALTERNATIVE:1 ENSMUSG00000028447 Dctn3 ENSMUST00000171641 ENSMUSP00000130988 TRANSLATION protein_coding - CCDS51143.1 3 159.0 0.0 4.5 1.0 145.9 0.0 -4,-5 0.0059 3 6.912 MINOR ENSMUSG00000028447 Dctn3 ENSMUST00000147120 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028447 Dctn3 ENSMUST00000030158 ENSMUSP00000030158 TRANSLATION protein_coding - CCDS18069.1 1 186.0 0.0 5.58 22.2 194.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000028337 Coro2a ENSMUST00000030021 ENSMUSP00000030021 TRANSLATION protein_coding - CCDS18154.1 1 524.0 0.0 8.3 5.0 217.6 0.0 -4,-2 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000028337 Coro2a ENSMUST00000139179 - NO_TRANSLATION retained_intron ENSMUSG00000028337 Coro2a ENSMUST00000107757 ENSMUSP00000103386 TRANSLATION protein_coding - CCDS71383.1 1 543.0 0.0 8.3 1.1 217.6 0.0 -4,-1 0.4472 14 12.05 MINOR ENSMUSG00000028337 Coro2a ENSMUST00000129121 - NO_TRANSLATION retained_intron ENSMUSG00000028337 Coro2a ENSMUST00000135062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028337 Coro2a ENSMUST00000107756 ENSMUSP00000103385 TRANSLATION protein_coding - CCDS18154.1 1 524.0 0.0 8.3 5.0 217.6 0.0 -4,-2 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000028337 Coro2a ENSMUST00000127304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029649 Pomp ENSMUST00000201376 ENSMUSP00000144685 TRANSLATION protein_coding - - 3 94.0 0.0 1.516 0.0 65.8 0.0 -4,-5 0.0 2 4.656 MINOR ENSMUSG00000029649 Pomp ENSMUST00000202621 - NO_TRANSLATION retained_intron ENSMUSG00000029649 Pomp ENSMUST00000202608 - NO_TRANSLATION retained_intron ENSMUSG00000029649 Pomp ENSMUST00000202222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029649 Pomp ENSMUST00000031654 ENSMUSP00000031654 TRANSLATION protein_coding - CCDS39402.1 1 141.0 0.0 3.28 33.1 129.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000029649 Pomp ENSMUST00000201120 ENSMUSP00000144196 TRANSLATION protein_coding - - 1 119.0 0.0 1.516 0.0 65.7 0.0 -4,-5 0.0 2 4.65 MINOR ENSMUSG00000029228 Lnx1 ENSMUST00000153543 ENSMUSP00000121094 TRANSLATION protein_coding - CCDS51522.1 5 569.0 0.0 5.632 0.0 197.7 0.0 -4,-6 0.0408 7 7.554 MINOR ENSMUSG00000029228 Lnx1 ENSMUST00000117388 ENSMUSP00000113035 TRANSLATION protein_coding - CCDS51524.1 1 728.0 7.0 7.007 10.3 226.0 0.0 -4,-5 1.0 8 20.877 PRINCIPAL:1 ENSMUSG00000029228 Lnx1 ENSMUST00000113531 ENSMUSP00000109159 TRANSLATION protein_coding - CCDS51522.1 1 569.0 0.0 5.632 0.0 197.7 0.0 -4,-6 0.0408 7 7.554 MINOR ENSMUSG00000029228 Lnx1 ENSMUST00000140084 ENSMUSP00000117935 TRANSLATION protein_coding start/stop - 5 322.0 0.0 3.05 0.0 124.5 0.0 -4,-5 0.0007 5 -2.0 MINOR ENSMUSG00000029228 Lnx1 ENSMUST00000117525 ENSMUSP00000113837 TRANSLATION protein_coding - CCDS19347.1 1 628.0 0.0 6.007 10.7 197.7 0.0 4,-1 0.7961 7 11.304 MINOR ENSMUSG00000029228 Lnx1 ENSMUST00000039744 ENSMUSP00000040098 TRANSLATION protein_coding - CCDS19347.1 1 628.0 0.0 6.007 10.7 197.7 0.0 4,-1 0.7961 7 11.304 MINOR ENSMUSG00000029228 Lnx1 ENSMUST00000087161 ENSMUSP00000084405 TRANSLATION protein_coding - CCDS51524.1 5 728.0 7.0 7.007 10.3 226.0 0.0 -4,-5 1.0 8 20.877 PRINCIPAL:1 ENSMUSG00000029228 Lnx1 ENSMUST00000121690 ENSMUSP00000113565 TRANSLATION protein_coding - CCDS51523.1 1 618.0 0.0 5.875 0.1 197.7 0.0 4,-1 0.0572 6 8.04 MINOR ENSMUSG00000029228 Lnx1 ENSMUST00000127396 ENSMUSP00000120886 TRANSLATION nonsense_mediated_decay - - 1 52.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000045482 Trrap ENSMUST00000198524 - NO_TRANSLATION retained_intron ENSMUSG00000045482 Trrap ENSMUST00000197834 - NO_TRANSLATION retained_intron ENSMUSG00000045482 Trrap ENSMUST00000143357 - NO_TRANSLATION retained_intron ENSMUSG00000045482 Trrap ENSMUST00000038980 ENSMUSP00000042544 TRANSLATION protein_coding - - 5 3829.0 0.0 19.7135 3.2 293.9 0.0 -4,-5 0.9372 80 9.0 ALTERNATIVE:2 ENSMUSG00000045482 Trrap ENSMUST00000100467 ENSMUSP00000098035 TRANSLATION protein_coding - CCDS39379.1 1 3847.0 0.0 19.7135 2.2 293.9 0.0 -4,-5 1.0 81 8.545 PRINCIPAL:3 ENSMUSG00000045482 Trrap ENSMUST00000213013 ENSMUSP00000148419 TRANSLATION protein_coding - - 5 3859.0 0.0 19.0085 2.8 291.0 0.0 -4,-5 0.6527 81 7.408 MINOR ENSMUSG00000045482 Trrap ENSMUST00000132925 ENSMUSP00000122021 TRANSLATION protein_coding start - 5 3587.0 0.0 18.7505 0.0 293.9 0.0 -4,-5 0.2419 78 -2.0 MINOR ENSMUSG00000045482 Trrap ENSMUST00000138589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045482 Trrap ENSMUST00000128550 ENSMUSP00000115917 TRANSLATION protein_coding stop - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0085 - -2.0 MINOR ENSMUSG00000045482 Trrap ENSMUST00000094120 ENSMUSP00000091668 TRANSLATION protein_coding - - 5 3858.0 0.0 19.0085 2.8 291.0 0.0 -4,-5 0.6527 80 7.408 MINOR ENSMUSG00000045482 Trrap ENSMUST00000196258 - NO_TRANSLATION retained_intron ENSMUSG00000045482 Trrap ENSMUST00000197741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045482 Trrap ENSMUST00000124909 - NO_TRANSLATION retained_intron ENSMUSG00000045482 Trrap ENSMUST00000136379 - NO_TRANSLATION retained_intron ENSMUSG00000045482 Trrap ENSMUST00000132347 - NO_TRANSLATION retained_intron ENSMUSG00000025855 Prkar1b ENSMUST00000141985 ENSMUSP00000117412 TRANSLATION protein_coding stop - 5 45.0 1.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025855 Prkar1b ENSMUST00000130180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025855 Prkar1b ENSMUST00000147505 ENSMUSP00000116727 TRANSLATION protein_coding stop - 3 116.0 3.0 2.83 0.0 53.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025855 Prkar1b ENSMUST00000129851 ENSMUSP00000121093 TRANSLATION protein_coding stop - 2 234.0 18.0 6.16 0.0 116.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025855 Prkar1b ENSMUST00000148002 ENSMUSP00000123286 TRANSLATION protein_coding stop - 2 251.0 18.0 6.66 0.0 118.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025855 Prkar1b ENSMUST00000110889 ENSMUSP00000106514 TRANSLATION protein_coding - - 5 257.0 28.0 6.58 0.0 138.7 0.0 -4,-5 0.0006 5 6.774 MINOR ENSMUSG00000025855 Prkar1b ENSMUST00000155833 ENSMUSP00000122693 TRANSLATION protein_coding stop - 3 107.0 3.0 2.5 0.0 53.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025855 Prkar1b ENSMUST00000026973 ENSMUSP00000026973 TRANSLATION protein_coding - CCDS19803.1 1 381.0 31.0 9.74 34.7 192.5 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000025855 Prkar1b ENSMUST00000134762 ENSMUSP00000116022 TRANSLATION protein_coding stop - 3 85.0 0.0 1.75 0.0 53.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025855 Prkar1b ENSMUST00000110890 ENSMUSP00000106515 TRANSLATION protein_coding - CCDS19803.1 1 381.0 31.0 9.74 34.7 192.5 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000025855 Prkar1b ENSMUST00000139415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061288 Taok3 ENSMUST00000125738 ENSMUSP00000117841 TRANSLATION protein_coding stop - 3 109.0 17.0 3.08 0.0 67.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061288 Taok3 ENSMUST00000111978 ENSMUSP00000107609 TRANSLATION protein_coding - CCDS39233.1 1 898.0 24.0 15.83 24.0 215.4 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000061288 Taok3 ENSMUST00000127814 ENSMUSP00000119998 TRANSLATION protein_coding start/stop - 3 239.0 11.0 5.08 0.0 134.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000061288 Taok3 ENSMUST00000179276 ENSMUSP00000136750 TRANSLATION protein_coding - CCDS39233.1 5 898.0 24.0 15.83 24.0 215.4 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000061288 Taok3 ENSMUST00000153709 - NO_TRANSLATION retained_intron ENSMUSG00000061288 Taok3 ENSMUST00000092889 ENSMUSP00000090565 TRANSLATION protein_coding - CCDS39233.1 5 898.0 24.0 15.83 24.0 215.4 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000061288 Taok3 ENSMUST00000145640 ENSMUSP00000116920 TRANSLATION protein_coding stop - 1 561.0 24.0 10.83 0.0 215.4 0.0 -4,-5 0.022 6 -2.0 MINOR ENSMUSG00000061288 Taok3 ENSMUST00000111975 ENSMUSP00000107606 TRANSLATION protein_coding - - 1 438.0 0.0 7.0 4.9 0.0 0.0 -4,-7 0.116 13 0.68 MINOR ENSMUSG00000061288 Taok3 ENSMUST00000128720 - NO_TRANSLATION retained_intron ENSMUSG00000061288 Taok3 ENSMUST00000126813 - NO_TRANSLATION retained_intron ENSMUSG00000029384 2010109A12Rik ENSMUST00000031330 ENSMUSP00000031330 TRANSLATION protein_coding - CCDS57357.1 1 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000029384 2010109A12Rik ENSMUST00000201993 - NO_TRANSLATION retained_intron ENSMUSG00000029658 Wdr95 ENSMUST00000202257 - NO_TRANSLATION retained_intron ENSMUSG00000029658 Wdr95 ENSMUST00000110502 ENSMUSP00000106128 TRANSLATION protein_coding - CCDS39409.1 5 642.0 0.0 5.28 0.0 75.1 0.0 -4,0 0.0918 - 10.188 MINOR ENSMUSG00000029658 Wdr95 ENSMUST00000201183 - NO_TRANSLATION retained_intron ENSMUSG00000029658 Wdr95 ENSMUST00000202805 - NO_TRANSLATION retained_intron ENSMUSG00000029658 Wdr95 ENSMUST00000202902 ENSMUSP00000144385 TRANSLATION protein_coding - - 5 784.0 0.0 5.58 0.0 94.1 0.0 -4,-5 0.783 - 12.0 PRINCIPAL:1 ENSMUSG00000029658 Wdr95 ENSMUST00000202635 - NO_TRANSLATION retained_intron ENSMUSG00000029658 Wdr95 ENSMUST00000201525 ENSMUSP00000144234 TRANSLATION nonsense_mediated_decay - - 1 211.0 0.0 2.298 0.0 29.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037017 Zscan21 ENSMUST00000110959 ENSMUSP00000106584 TRANSLATION protein_coding - CCDS19790.1 1 555.0 28.0 1.4 0.1 313.3 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000037017 Zscan21 ENSMUST00000062350 ENSMUSP00000053430 TRANSLATION protein_coding - CCDS19790.1 1 555.0 28.0 1.4 0.1 313.3 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000037017 Zscan21 ENSMUST00000110961 ENSMUSP00000106586 TRANSLATION protein_coding - CCDS19790.1 1 555.0 28.0 1.4 0.1 313.3 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000037017 Zscan21 ENSMUST00000136425 ENSMUSP00000119570 TRANSLATION protein_coding stop - 5 160.0 0.0 0.4 0.0 61.9 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000037017 Zscan21 ENSMUST00000142185 ENSMUSP00000121495 TRANSLATION protein_coding start/stop - 5 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037017 Zscan21 ENSMUST00000110960 ENSMUSP00000106585 TRANSLATION protein_coding - CCDS19790.1 1 555.0 28.0 1.4 0.1 313.3 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000037017 Zscan21 ENSMUST00000080732 ENSMUSP00000079557 TRANSLATION protein_coding - CCDS19790.1 1 555.0 28.0 1.4 0.1 313.3 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000092060 Bend4 ENSMUST00000202131 ENSMUSP00000144144 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000092060 Bend4 ENSMUST00000169190 ENSMUSP00000132684 TRANSLATION protein_coding - CCDS51512.1 5 541.0 0.0 0.0 0.4 54.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000092060 Bend4 ENSMUST00000201705 ENSMUSP00000144426 TRANSLATION protein_coding start - 5 398.0 0.0 0.0 0.0 29.4 0.0 -2,1 0.0045 - -2.0 MINOR ENSMUSG00000092060 Bend4 ENSMUST00000201972 ENSMUSP00000144639 TRANSLATION protein_coding - CCDS51512.1 5 541.0 0.0 0.0 0.4 54.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000092060 Bend4 ENSMUST00000201528 ENSMUSP00000144507 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009580 Odam ENSMUST00000129757 ENSMUSP00000117898 TRANSLATION protein_coding - CCDS19394.2 5 273.0 0.0 0.0 5.6 428.2 0.0 3,-3 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000009580 Odam ENSMUST00000113274 ENSMUSP00000108899 TRANSLATION protein_coding - CCDS19394.2 1 273.0 0.0 0.0 5.6 428.2 0.0 3,-3 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000060152 Pop5 ENSMUST00000140083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060152 Pop5 ENSMUST00000128830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060152 Pop5 ENSMUST00000135455 ENSMUSP00000118408 TRANSLATION nonsense_mediated_decay - CCDS19583.1 1 169.0 0.0 4.08 10.4 88.4 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000060152 Pop5 ENSMUST00000154800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060152 Pop5 ENSMUST00000142233 - NO_TRANSLATION retained_intron ENSMUSG00000060152 Pop5 ENSMUST00000081497 ENSMUSP00000080215 TRANSLATION protein_coding - CCDS19583.1 5 169.0 0.0 4.08 10.4 88.4 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000042605 Atxn2 ENSMUST00000159828 - NO_TRANSLATION retained_intron ENSMUSG00000042605 Atxn2 ENSMUST00000225761 ENSMUSP00000153566 TRANSLATION protein_coding stop - - 402.0 0.0 0.0 0.0 137.5 0.0 -3,-6 0.0143 14 -2.0 MINOR ENSMUSG00000042605 Atxn2 ENSMUST00000160813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042605 Atxn2 ENSMUST00000162611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042605 Atxn2 ENSMUST00000160462 ENSMUSP00000124092 TRANSLATION nonsense_mediated_decay start - 5 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042605 Atxn2 ENSMUST00000199864 ENSMUSP00000142984 TRANSLATION protein_coding start - 3 64.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000042605 Atxn2 ENSMUST00000161872 - NO_TRANSLATION retained_intron ENSMUSG00000042605 Atxn2 ENSMUST00000162459 - NO_TRANSLATION retained_intron ENSMUSG00000042605 Atxn2 ENSMUST00000162327 ENSMUSP00000123784 TRANSLATION protein_coding start - 5 662.0 0.0 0.0 0.0 27.0 0.0 -4,-7 0.0059 10 -2.0 MINOR ENSMUSG00000042605 Atxn2 ENSMUST00000051950 ENSMUSP00000056715 TRANSLATION protein_coding - CCDS39250.1 1 1286.0 0.0 0.0 0.4 164.5 0.0 -4,-1 1.0 25 6.0 PRINCIPAL:1 ENSMUSG00000042605 Atxn2 ENSMUST00000160093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042605 Atxn2 ENSMUST00000160821 ENSMUSP00000125647 TRANSLATION protein_coding start/stop - 5 330.0 0.0 0.0 0.0 32.2 0.0 -4,-5 0.0007 10 -2.0 MINOR ENSMUSG00000042605 Atxn2 ENSMUST00000161836 - NO_TRANSLATION retained_intron ENSMUSG00000042605 Atxn2 ENSMUST00000200499 - NO_TRANSLATION retained_intron ENSMUSG00000042605 Atxn2 ENSMUST00000160220 ENSMUSP00000124059 TRANSLATION nonsense_mediated_decay start - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000042605 Atxn2 ENSMUST00000199451 - NO_TRANSLATION retained_intron ENSMUSG00000042605 Atxn2 ENSMUST00000161433 - NO_TRANSLATION retained_intron ENSMUSG00000042605 Atxn2 ENSMUST00000161064 ENSMUSP00000124070 TRANSLATION protein_coding start - 5 929.0 0.0 0.0 0.0 87.6 0.0 -4,-5 0.0168 20 -2.0 MINOR ENSMUSG00000042605 Atxn2 ENSMUST00000161159 ENSMUSP00000123833 TRANSLATION protein_coding start - 3 234.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000042605 Atxn2 ENSMUST00000159928 - NO_TRANSLATION retained_intron ENSMUSG00000029265 Dr1 ENSMUST00000031190 ENSMUSP00000031190 TRANSLATION protein_coding - CCDS19509.1 1 176.0 0.0 3.0 23.4 80.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000029265 Dr1 ENSMUST00000154862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054537 Tmprss11e ENSMUST00000161306 ENSMUSP00000124534 TRANSLATION protein_coding - CCDS51533.1 1 423.0 6.0 4.0 10.5 302.2 0.0 -4,-6 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000039987 Phtf2 ENSMUST00000133784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039987 Phtf2 ENSMUST00000140147 - NO_TRANSLATION retained_intron ENSMUSG00000039987 Phtf2 ENSMUST00000124431 ENSMUSP00000118028 TRANSLATION nonsense_mediated_decay start - 3 20.0 0.0 0.0 0.0 0.0 0.0 -1,-7 0.0001 - -2.0 MINOR ENSMUSG00000039987 Phtf2 ENSMUST00000156044 ENSMUSP00000120222 TRANSLATION nonsense_mediated_decay - - 3 53.0 0.0 0.0 0.0 49.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039987 Phtf2 ENSMUST00000139325 - NO_TRANSLATION retained_intron ENSMUSG00000039987 Phtf2 ENSMUST00000118174 ENSMUSP00000114087 TRANSLATION protein_coding - CCDS51426.1 1 747.0 0.0 0.0 20.0 242.9 7.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000039987 Phtf2 ENSMUST00000153194 ENSMUSP00000120624 TRANSLATION nonsense_mediated_decay start - 1 169.0 0.0 0.0 0.0 0.0 4.0 -1,-4 0.0024 - -2.0 MINOR ENSMUSG00000029428 Stx2 ENSMUST00000141492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029428 Stx2 ENSMUST00000031378 ENSMUSP00000031378 TRANSLATION protein_coding - CCDS19692.1 1 289.0 0.0 6.75 33.9 275.2 1.0 -4,-5 1.0 6 11.94 PRINCIPAL:4 ENSMUSG00000029428 Stx2 ENSMUST00000149877 ENSMUSP00000118220 TRANSLATION protein_coding stop - 3 85.0 0.0 2.66 0.0 56.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029428 Stx2 ENSMUST00000151712 - NO_TRANSLATION retained_intron ENSMUSG00000029428 Stx2 ENSMUST00000144846 - NO_TRANSLATION retained_intron ENSMUSG00000029428 Stx2 ENSMUST00000195906 ENSMUSP00000142681 TRANSLATION nonsense_mediated_decay - - 3 42.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029428 Stx2 ENSMUST00000128448 - NO_TRANSLATION retained_intron ENSMUSG00000029428 Stx2 ENSMUST00000100680 ENSMUSP00000098247 TRANSLATION protein_coding - CCDS71672.1 1 288.0 0.0 6.78 27.5 273.0 1.0 -4,-5 0.9779 6 11.22 ALTERNATIVE:1 ENSMUSG00000029428 Stx2 ENSMUST00000199813 - NO_TRANSLATION retained_intron ENSMUSG00000053647 Gper1 ENSMUST00000173364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053647 Gper1 ENSMUST00000066211 ENSMUSP00000080370 TRANSLATION protein_coding - CCDS19811.1 1 375.0 0.0 0.32 4.5 131.0 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043940 Wdfy3 ENSMUST00000172512 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043940 Wdfy3 ENSMUST00000173955 - NO_TRANSLATION retained_intron ENSMUSG00000043940 Wdfy3 ENSMUST00000174698 ENSMUSP00000134541 TRANSLATION protein_coding - - 1 913.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0086 16 0.0 MINOR ENSMUSG00000043940 Wdfy3 ENSMUST00000053177 ENSMUSP00000052607 TRANSLATION protein_coding - CCDS19473.1 1 3508.0 8.0 12.0675 12.2 578.7 0.0 -4,-6 1.0 70 17.008 PRINCIPAL:3 ENSMUSG00000043940 Wdfy3 ENSMUST00000212024 ENSMUSP00000148521 TRANSLATION protein_coding - - 5 3512.0 8.0 12.0675 3.5 578.7 0.0 -4,-6 0.38 69 14.672 MINOR ENSMUSG00000043940 Wdfy3 ENSMUST00000174598 ENSMUSP00000134244 TRANSLATION protein_coding - - 5 3526.0 8.0 12.0675 15.9 578.7 0.0 -4,-6 0.9063 69 18.0 ALTERNATIVE:1 ENSMUSG00000043940 Wdfy3 ENSMUST00000172927 ENSMUSP00000133979 TRANSLATION nonsense_mediated_decay start - 5 124.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000045438 Cox19 ENSMUST00000152715 - NO_TRANSLATION retained_intron ENSMUSG00000045438 Cox19 ENSMUST00000049630 ENSMUSP00000062046 TRANSLATION protein_coding - CCDS39350.1 1 92.0 0.0 1.95 16.7 28.2 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000045438 Cox19 ENSMUST00000148000 - NO_TRANSLATION retained_intron ENSMUSG00000045438 Cox19 ENSMUST00000198966 ENSMUSP00000143206 TRANSLATION protein_coding - - 3 69.0 0.0 1.75 0.0 28.2 0.0 -4,-5 0.002 4 11.382 MINOR ENSMUSG00000045438 Cox19 ENSMUST00000197520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045438 Cox19 ENSMUST00000133951 ENSMUSP00000138476 TRANSLATION nonsense_mediated_decay start - 3 63.0 0.0 1.2 0.0 28.2 0.0 -4,-5 0.0091 3 -2.0 MINOR ENSMUSG00000045438 Cox19 ENSMUST00000145125 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041548 Hspb8 ENSMUST00000036991 ENSMUSP00000037007 TRANSLATION protein_coding - CCDS19600.1 1 196.0 0.0 2.15 18.5 62.3 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000041548 Hspb8 ENSMUST00000133335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039899 Fgl2 ENSMUST00000035799 ENSMUSP00000046131 TRANSLATION protein_coding - CCDS19103.1 1 432.0 6.0 0.866 6.0 335.7 0.0 3,-1 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000105340 Gm42878 ENSMUST00000125946 ENSMUSP00000142503 TRANSLATION nonsense_mediated_decay,RT - - 5 471.0 18.0 5.5175 20.4 205.7 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000091450 Vmn2r11 ENSMUST00000164875 ENSMUSP00000133218 TRANSLATION protein_coding - CCDS51597.1 5 861.0 5.0 2.78 0.0 373.9 8.0 1,-3 1.0 - 13.0 PRINCIPAL:2 ENSMUSG00000091450 Vmn2r11 ENSMUST00000233971 ENSMUSP00000156848 TRANSLATION nonsense_mediated_decay - - - 578.0 3.0 2.3 0.0 158.8 0.0 1,-3 0.0032 - -2.0 MINOR ENSMUSG00000091450 Vmn2r11 ENSMUST00000240711 ENSMUSP00000159504 TRANSLATION protein_coding - - - 848.0 5.0 2.48 0.4 377.8 8.0 1,-3 0.3092 - 12.352 ALTERNATIVE:2 ENSMUSG00000091450 Vmn2r11 ENSMUST00000233894 - NO_TRANSLATION retained_intron ENSMUSG00000042647 Acad12 ENSMUST00000197916 ENSMUSP00000142370 TRANSLATION nonsense_mediated_decay - - 3 67.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0007 - -2.0 MINOR ENSMUSG00000042647 Acad12 ENSMUST00000111776 ENSMUSP00000107406 TRANSLATION protein_coding - - 1 373.0 10.0 5.1 0.0 110.1 0.0 -4,0 0.0 4 0.342 MINOR ENSMUSG00000042647 Acad12 ENSMUST00000041252 ENSMUSP00000046497 TRANSLATION protein_coding - CCDS51642.1 1 555.0 28.0 9.1 0.0 204.4 0.0 -4,0 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000042647 Acad12 ENSMUST00000131338 ENSMUSP00000121904 TRANSLATION protein_coding start - 1 182.0 2.0 2.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000042647 Acad12 ENSMUST00000197306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025825 Iscu ENSMUST00000112311 ENSMUSP00000107930 TRANSLATION protein_coding - - 2 209.0 5.0 2.95 0.0 165.8 0.0 -3,1 0.0011 5 13.886 MINOR ENSMUSG00000025825 Iscu ENSMUST00000123616 ENSMUSP00000117973 TRANSLATION nonsense_mediated_decay - - 3 124.0 0.0 0.2 0.0 0.0 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000025825 Iscu ENSMUST00000145592 ENSMUSP00000123237 TRANSLATION protein_coding stop - 5 136.0 5.0 2.75 0.0 163.1 0.0 -4,-6 0.0003 5 -2.0 MINOR ENSMUSG00000025825 Iscu ENSMUST00000112312 ENSMUSP00000107931 TRANSLATION protein_coding - - 5 209.0 5.0 2.95 0.0 165.8 0.0 -3,1 0.0011 5 13.886 MINOR ENSMUSG00000025825 Iscu ENSMUST00000134881 ENSMUSP00000120553 TRANSLATION nonsense_mediated_decay start - 3 59.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0 - -2.0 MINOR ENSMUSG00000025825 Iscu ENSMUST00000026937 ENSMUSP00000026937 TRANSLATION protein_coding - CCDS19553.1 1 168.0 5.0 3.7 11.4 192.7 0.0 -3,1 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000025825 Iscu ENSMUST00000145778 ENSMUSP00000117053 TRANSLATION protein_coding start - 3 65.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000066900 Suds3 ENSMUST00000202684 - NO_TRANSLATION retained_intron ENSMUSG00000066900 Suds3 ENSMUST00000201287 - NO_TRANSLATION retained_intron ENSMUSG00000066900 Suds3 ENSMUST00000202713 - NO_TRANSLATION retained_intron ENSMUSG00000066900 Suds3 ENSMUST00000200684 - NO_TRANSLATION retained_intron ENSMUSG00000066900 Suds3 ENSMUST00000166397 ENSMUSP00000130535 TRANSLATION protein_coding - CCDS51631.1 1 332.0 0.0 3.028 0.4 0.0 0.0 -2,-3 0.4244 4 6.0 ALTERNATIVE:2 ENSMUSG00000066900 Suds3 ENSMUST00000086471 ENSMUSP00000083662 TRANSLATION protein_coding - CCDS39232.1 1 328.0 0.0 3.028 3.4 0.0 0.0 -2,-3 1.0 4 7.0 PRINCIPAL:2 ENSMUSG00000038126 Mphosph9 ENSMUST00000149933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038126 Mphosph9 ENSMUST00000128027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038126 Mphosph9 ENSMUST00000156745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038126 Mphosph9 ENSMUST00000141203 ENSMUSP00000117437 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0271 - -2.0 MINOR ENSMUSG00000038126 Mphosph9 ENSMUST00000031344 ENSMUSP00000031344 TRANSLATION protein_coding - CCDS39277.1 5 1114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9925 6 0.0 PRINCIPAL:2 ENSMUSG00000038126 Mphosph9 ENSMUST00000156013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038126 Mphosph9 ENSMUST00000130502 ENSMUSP00000120827 TRANSLATION nonsense_mediated_decay - - 1 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0241 - -2.0 MINOR ENSMUSG00000038126 Mphosph9 ENSMUST00000143476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038126 Mphosph9 ENSMUST00000142498 - NO_TRANSLATION retained_intron ENSMUSG00000038126 Mphosph9 ENSMUST00000184951 ENSMUSP00000138982 TRANSLATION protein_coding - CCDS71671.1 5 1144.0 0.0 0.0 0.3 0.0 0.0 -4,-5 0.5561 6 0.0 ALTERNATIVE:2 ENSMUSG00000038126 Mphosph9 ENSMUST00000147737 ENSMUSP00000114795 TRANSLATION nonsense_mediated_decay - - 5 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0271 - -2.0 MINOR ENSMUSG00000052783 Grk4 ENSMUST00000148588 ENSMUSP00000122826 TRANSLATION protein_coding start - 2 96.0 0.0 2.33 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000052783 Grk4 ENSMUST00000134217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052783 Grk4 ENSMUST00000001112 ENSMUSP00000001112 TRANSLATION protein_coding - CCDS19219.1 1 574.0 18.0 13.26 9.3 288.9 0.0 -4,-6 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000052783 Grk4 ENSMUST00000074651 ENSMUSP00000074223 TRANSLATION protein_coding - CCDS39070.1 1 177.0 0.0 4.41 0.0 57.4 0.0 -4,-6 0.0037 - 0.0 MINOR ENSMUSG00000052783 Grk4 ENSMUST00000153323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014932 Yes1 ENSMUST00000168707 ENSMUSP00000132161 TRANSLATION protein_coding - CCDS39061.1 1 541.0 17.0 10.08 16.8 471.9 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000014932 Yes1 ENSMUST00000200999 ENSMUSP00000144355 TRANSLATION protein_coding stop - 5 198.0 0.0 3.33 0.0 120.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000014932 Yes1 ENSMUST00000200779 - NO_TRANSLATION retained_intron ENSMUSG00000014932 Yes1 ENSMUST00000072311 ENSMUSP00000072154 TRANSLATION protein_coding - CCDS39061.1 1 541.0 17.0 10.08 16.8 471.9 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000014932 Yes1 ENSMUST00000202543 ENSMUSP00000144001 TRANSLATION protein_coding - CCDS39061.1 1 541.0 17.0 10.08 16.8 471.9 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000079165 Sap25 ENSMUST00000177354 - NO_TRANSLATION retained_intron ENSMUSG00000079165 Sap25 ENSMUST00000176075 - NO_TRANSLATION retained_intron ENSMUSG00000079165 Sap25 ENSMUST00000176256 - NO_TRANSLATION retained_intron ENSMUSG00000079165 Sap25 ENSMUST00000177038 - NO_TRANSLATION retained_intron ENSMUSG00000079165 Sap25 ENSMUST00000177466 ENSMUSP00000135735 TRANSLATION protein_coding - - 5 280.0 0.0 1.0 0.0 247.3 0.0 -4,-5 0.0841 - 6.0 ALTERNATIVE:2 ENSMUSG00000079165 Sap25 ENSMUST00000166099 ENSMUSP00000127076 TRANSLATION protein_coding - CCDS39336.2 1 261.0 0.0 1.0 0.0 247.3 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000057068 Fam47e ENSMUST00000175974 ENSMUSP00000135200 TRANSLATION protein_coding - - 1 58.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000057068 Fam47e ENSMUST00000176621 ENSMUSP00000135365 TRANSLATION protein_coding - - 3 121.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - 2.52 MINOR ENSMUSG00000057068 Fam47e ENSMUST00000176448 ENSMUSP00000135051 TRANSLATION protein_coding stop - 3 159.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000057068 Fam47e ENSMUST00000082382 ENSMUSP00000080987 TRANSLATION protein_coding - CCDS51548.1 5 199.0 0.0 1.43 0.0 0.0 0.0 -4,-7 0.2202 - 6.0 MINOR ENSMUSG00000057068 Fam47e ENSMUST00000149617 ENSMUSP00000121392 TRANSLATION nonsense_mediated_decay start - 3 44.0 3.0 0.0 0.0 0.0 0.0 -4,-1 0.0025 - -2.0 MINOR ENSMUSG00000057068 Fam47e ENSMUST00000146417 ENSMUSP00000115229 TRANSLATION protein_coding - - 5 402.0 0.0 1.43 0.4 98.0 0.0 -4,-7 0.787 - 12.0 PRINCIPAL:1 ENSMUSG00000057068 Fam47e ENSMUST00000131166 ENSMUSP00000118033 TRANSLATION protein_coding - CCDS19432.2 1 260.0 0.0 1.43 0.0 0.0 0.0 -4,-7 0.2265 - 6.0 MINOR ENSMUSG00000067642 Adgrf3 ENSMUST00000088117 ENSMUSP00000085440 TRANSLATION protein_coding - CCDS51450.1 1 991.0 0.0 1.418 0.3 148.2 6.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067642 Adgrf3 ENSMUST00000135322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067642 Adgrf3 ENSMUST00000125367 ENSMUSP00000120958 TRANSLATION protein_coding start - 2 107.0 0.0 0.78 0.0 0.0 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000091903 Gm6460 ENSMUST00000163787 ENSMUSP00000131216 TRANSLATION protein_coding - CCDS51413.1 1 157.0 0.0 1.306 0.0 81.6 0.0 -4,-7 0.3716 - 8.0 ALTERNATIVE:2 ENSMUSG00000091903 Gm6460 ENSMUST00000088616 ENSMUSP00000085987 TRANSLATION protein_coding - - 1 199.0 0.0 1.306 0.0 81.6 0.0 -4,-2 0.7813 - 8.0 PRINCIPAL:2 ENSMUSG00000029426 Scarb2 ENSMUST00000031377 ENSMUSP00000031377 TRANSLATION protein_coding - CCDS19431.1 1 478.0 0.0 10.25 18.2 510.3 0.0 2,-3 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000029426 Scarb2 ENSMUST00000201253 - NO_TRANSLATION retained_intron ENSMUSG00000032959 Pebp1 ENSMUST00000139913 - NO_TRANSLATION retained_intron ENSMUSG00000032959 Pebp1 ENSMUST00000036951 ENSMUSP00000048425 TRANSLATION protein_coding - CCDS39234.1 1 187.0 12.0 4.0 34.7 0.0 0.0 -4,-5 1.0 9 15.85 PRINCIPAL:1 ENSMUSG00000032959 Pebp1 ENSMUST00000111973 ENSMUSP00000107604 TRANSLATION protein_coding - - 3 209.0 12.0 4.075 0.0 0.0 0.0 -4,-5 0.0321 8 12.0 MINOR ENSMUSG00000032959 Pebp1 ENSMUST00000142428 ENSMUSP00000116186 TRANSLATION nonsense_mediated_decay - - 5 136.0 8.0 3.15 0.0 0.0 0.0 -4,-5 0.0042 5 -2.0 MINOR ENSMUSG00000040407 Akap9 ENSMUST00000123119 - NO_TRANSLATION retained_intron ENSMUSG00000040407 Akap9 ENSMUST00000143365 ENSMUSP00000117209 TRANSLATION protein_coding stop - 1 581.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0051 18 -2.0 MINOR ENSMUSG00000040407 Akap9 ENSMUST00000196350 - NO_TRANSLATION retained_intron ENSMUSG00000040407 Akap9 ENSMUST00000132058 - NO_TRANSLATION retained_intron ENSMUSG00000040407 Akap9 ENSMUST00000196918 - NO_TRANSLATION retained_intron ENSMUSG00000040407 Akap9 ENSMUST00000177448 - NO_TRANSLATION retained_intron ENSMUSG00000040407 Akap9 ENSMUST00000147629 ENSMUSP00000133522 TRANSLATION nonsense_mediated_decay start - 5 56.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0107 - -2.0 MINOR ENSMUSG00000040407 Akap9 ENSMUST00000176863 ENSMUSP00000135836 TRANSLATION protein_coding start/stop - 3 198.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040407 Akap9 ENSMUST00000133952 ENSMUSP00000143327 TRANSLATION protein_coding start - 3 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040407 Akap9 ENSMUST00000044492 ENSMUSP00000046129 TRANSLATION protein_coding - CCDS19070.1 1 3779.0 0.0 0.0 0.0 83.9 0.0 -4,-5 1.0 90 6.0 PRINCIPAL:1 ENSMUSG00000040407 Akap9 ENSMUST00000238634 ENSMUSP00000158625 TRANSLATION protein_coding stop - - 282.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0017 3 -2.0 MINOR ENSMUSG00000040407 Akap9 ENSMUST00000140977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040407 Akap9 ENSMUST00000141817 - NO_TRANSLATION retained_intron ENSMUSG00000040407 Akap9 ENSMUST00000198973 - NO_TRANSLATION retained_intron ENSMUSG00000040407 Akap9 ENSMUST00000196837 - NO_TRANSLATION retained_intron ENSMUSG00000040407 Akap9 ENSMUST00000197366 - NO_TRANSLATION retained_intron ENSMUSG00000029174 Tbc1d1 ENSMUST00000043893 ENSMUSP00000044577 TRANSLATION protein_coding - CCDS80287.1 2 1255.0 0.0 6.68 1.5 286.7 0.0 -4,-6 0.5596 29 9.0 ALTERNATIVE:2 ENSMUSG00000029174 Tbc1d1 ENSMUST00000140960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029174 Tbc1d1 ENSMUST00000101195 ENSMUSP00000098756 TRANSLATION protein_coding - CCDS39094.1 1 1162.0 0.0 6.68 1.5 286.7 0.0 -4,-6 1.0 27 9.0 PRINCIPAL:2 ENSMUSG00000029174 Tbc1d1 ENSMUST00000119756 ENSMUSP00000113643 TRANSLATION protein_coding - CCDS71593.1 1 1033.0 0.0 6.68 0.0 286.7 0.0 -4,-6 0.5325 25 8.0 ALTERNATIVE:2 ENSMUSG00000029174 Tbc1d1 ENSMUST00000129389 - NO_TRANSLATION retained_intron ENSMUSG00000029174 Tbc1d1 ENSMUST00000147348 ENSMUSP00000119710 TRANSLATION nonsense_mediated_decay start - 5 101.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029174 Tbc1d1 ENSMUST00000199270 ENSMUSP00000143451 TRANSLATION protein_coding stop - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0275 - -2.0 MINOR ENSMUSG00000029174 Tbc1d1 ENSMUST00000121370 ENSMUSP00000112493 TRANSLATION protein_coding - CCDS39094.1 1 1162.0 0.0 6.68 1.5 286.7 0.0 -4,-6 1.0 27 9.0 PRINCIPAL:2 ENSMUSG00000037355 Uvssa ENSMUST00000202816 ENSMUSP00000144400 TRANSLATION protein_coding - CCDS39064.1 1 717.0 7.0 0.8 0.1 135.9 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000037355 Uvssa ENSMUST00000087864 ENSMUSP00000085170 TRANSLATION protein_coding - CCDS39064.1 1 717.0 7.0 0.8 0.1 135.9 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000037355 Uvssa ENSMUST00000200682 - NO_TRANSLATION retained_intron ENSMUSG00000037355 Uvssa ENSMUST00000202046 ENSMUSP00000144025 TRANSLATION nonsense_mediated_decay - - 1 532.0 0.0 0.8 0.1 0.0 0.0 -4,-5 0.0362 6 -2.0 MINOR ENSMUSG00000029431 B3gnt4 ENSMUST00000031384 ENSMUSP00000031384 TRANSLATION protein_coding - CCDS19665.1 - 350.0 0.0 1.0 1.1 141.6 0.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000029722 Agfg2 ENSMUST00000100544 ENSMUSP00000098112 TRANSLATION protein_coding - CCDS80443.1 1 490.0 4.0 3.5 5.0 85.4 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:4 ENSMUSG00000029722 Agfg2 ENSMUST00000147518 - NO_TRANSLATION retained_intron ENSMUSG00000029722 Agfg2 ENSMUST00000198657 ENSMUSP00000143273 TRANSLATION protein_coding start/stop - 3 114.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000029722 Agfg2 ENSMUST00000031736 ENSMUSP00000031736 TRANSLATION protein_coding - CCDS19774.1 1 479.0 4.0 3.5 3.6 85.4 0.0 -4,-5 0.8723 10 13.3 ALTERNATIVE:2 ENSMUSG00000029722 Agfg2 ENSMUST00000138604 - NO_TRANSLATION retained_intron ENSMUSG00000029722 Agfg2 ENSMUST00000151839 ENSMUSP00000117351 TRANSLATION protein_coding stop - 1 406.0 4.0 3.5 0.0 85.4 0.0 -4,-5 0.0189 10 -2.0 MINOR ENSMUSG00000035861 Tmprss11b ENSMUST00000038448 ENSMUSP00000042406 TRANSLATION protein_coding - CCDS39126.1 1 416.0 5.0 3.2 5.9 309.0 0.0 -1,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000029729 Zkscan1 ENSMUST00000110962 ENSMUSP00000106587 TRANSLATION protein_coding - CCDS19788.1 1 488.0 24.0 1.0 4.0 290.4 0.0 -4,-5 0.3312 5 16.815 MINOR ENSMUSG00000029729 Zkscan1 ENSMUST00000019660 ENSMUSP00000019660 TRANSLATION protein_coding - CCDS19789.1 1 561.0 24.0 1.0 10.7 325.6 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000029729 Zkscan1 ENSMUST00000110963 ENSMUSP00000106588 TRANSLATION protein_coding - CCDS19788.1 1 488.0 24.0 1.0 4.0 290.4 0.0 -4,-5 0.3312 5 16.815 MINOR ENSMUSG00000029729 Zkscan1 ENSMUST00000066617 ENSMUSP00000068480 TRANSLATION protein_coding - CCDS19788.1 5 488.0 24.0 1.0 4.0 290.4 0.0 -4,-5 0.3312 5 16.815 MINOR ENSMUSG00000029166 Mapre3 ENSMUST00000202256 - NO_TRANSLATION retained_intron ENSMUSG00000029166 Mapre3 ENSMUST00000202501 ENSMUSP00000144591 TRANSLATION protein_coding stop - 2 140.0 3.0 3.0 0.0 58.3 0.0 -4,-6 0.0005 5 -2.0 MINOR ENSMUSG00000029166 Mapre3 ENSMUST00000200692 ENSMUSP00000143890 TRANSLATION protein_coding - CCDS80240.1 5 266.0 3.0 4.45 24.5 121.5 0.0 -4,-6 0.8927 8 17.348 MINOR ENSMUSG00000029166 Mapre3 ENSMUST00000201347 - NO_TRANSLATION retained_intron ENSMUSG00000029166 Mapre3 ENSMUST00000202025 - NO_TRANSLATION retained_intron ENSMUSG00000029166 Mapre3 ENSMUST00000031058 ENSMUSP00000031058 TRANSLATION protein_coding - CCDS19163.1 1 281.0 3.0 4.75 32.9 121.5 0.0 -4,-6 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000028944 Prkag2 ENSMUST00000148531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028944 Prkag2 ENSMUST00000076306 ENSMUSP00000075651 TRANSLATION protein_coding - CCDS80231.1 1 443.0 46.0 8.726 8.4 103.1 0.0 -4,-2 0.8736 14 16.466 ALTERNATIVE:1 ENSMUSG00000028944 Prkag2 ENSMUST00000129022 - NO_TRANSLATION retained_intron ENSMUSG00000028944 Prkag2 ENSMUST00000114975 ENSMUSP00000110626 TRANSLATION protein_coding - CCDS51437.1 1 326.0 46.0 8.726 5.3 103.1 0.0 -4,-5 0.6725 12 15.434 MINOR ENSMUSG00000028944 Prkag2 ENSMUST00000030784 ENSMUSP00000030784 TRANSLATION protein_coding - CCDS19130.1 1 566.0 46.0 8.726 10.0 103.1 0.0 -4,-5 1.0 17 17.0 PRINCIPAL:3 ENSMUSG00000028944 Prkag2 ENSMUST00000139698 - NO_TRANSLATION retained_intron ENSMUSG00000028944 Prkag2 ENSMUST00000150135 ENSMUSP00000114978 TRANSLATION protein_coding stop - 5 244.0 32.0 6.726 0.0 63.5 0.0 -4,-5 0.0015 10 -2.0 MINOR ENSMUSG00000028944 Prkag2 ENSMUST00000131486 ENSMUSP00000115760 TRANSLATION protein_coding stop - 3 191.0 23.0 5.0 0.0 25.6 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000028944 Prkag2 ENSMUST00000135525 - NO_TRANSLATION retained_intron ENSMUSG00000028944 Prkag2 ENSMUST00000123749 ENSMUSP00000117149 TRANSLATION protein_coding stop - 5 19.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047221 Fam185a ENSMUST00000153301 - NO_TRANSLATION retained_intron ENSMUSG00000047221 Fam185a ENSMUST00000146056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047221 Fam185a ENSMUST00000056045 ENSMUSP00000058333 TRANSLATION protein_coding - CCDS39022.1 1 378.0 0.0 0.95 0.1 0.0 0.0 -3,1 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000066278 Vps37b ENSMUST00000040967 ENSMUSP00000047980 TRANSLATION protein_coding - CCDS19670.1 1 285.0 0.0 2.57 8.0 127.8 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000066278 Vps37b ENSMUST00000199741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066278 Vps37b ENSMUST00000199306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029603 Dtx1 ENSMUST00000144889 - NO_TRANSLATION retained_intron ENSMUSG00000029603 Dtx1 ENSMUST00000031607 ENSMUSP00000031607 TRANSLATION protein_coding - CCDS19624.1 1 627.0 8.0 5.07 4.6 151.8 0.0 -4,-7 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000029603 Dtx1 ENSMUST00000124079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029603 Dtx1 ENSMUST00000201264 - NO_TRANSLATION retained_intron ENSMUSG00000029603 Dtx1 ENSMUST00000145174 - NO_TRANSLATION retained_intron ENSMUSG00000029603 Dtx1 ENSMUST00000151562 - NO_TRANSLATION retained_intron ENSMUSG00000029346 Srrd ENSMUST00000031289 ENSMUSP00000031289 TRANSLATION protein_coding - CCDS51614.1 1 249.0 0.0 1.1 0.0 61.3 0.0 -4,-1 0.9873 2 11.502 PRINCIPAL:1 ENSMUSG00000029346 Srrd ENSMUST00000125628 - NO_TRANSLATION retained_intron ENSMUSG00000029346 Srrd ENSMUST00000147940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029346 Srrd ENSMUST00000155756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029346 Srrd ENSMUST00000156083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029346 Srrd ENSMUST00000146510 ENSMUSP00000119870 TRANSLATION protein_coding start - 2 349.0 0.0 1.2 0.3 61.3 0.0 -4,-2 0.1127 2 -2.0 MINOR ENSMUSG00000029507 Pus1 ENSMUST00000031483 ENSMUSP00000031483 TRANSLATION protein_coding - CCDS19531.1 1 423.0 1.0 3.5 1.4 51.7 0.0 -3,0 0.4705 9 12.222 MINOR ENSMUSG00000029507 Pus1 ENSMUST00000031481 ENSMUSP00000031481 TRANSLATION protein_coding - CCDS39212.1 1 393.0 1.0 3.5 4.6 51.7 0.0 -4,-6 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000029507 Pus1 ENSMUST00000149208 ENSMUSP00000115468 TRANSLATION protein_coding stop - 3 162.0 1.0 2.5 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000029507 Pus1 ENSMUST00000170468 ENSMUSP00000130814 TRANSLATION protein_coding - CCDS39212.1 5 393.0 1.0 3.5 4.6 51.7 0.0 -4,-6 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000029507 Pus1 ENSMUST00000112426 ENSMUSP00000108045 TRANSLATION protein_coding - CCDS84929.1 1 347.0 0.0 2.5 0.0 51.7 0.0 -4,-6 0.0781 9 10.002 MINOR ENSMUSG00000029507 Pus1 ENSMUST00000136483 ENSMUSP00000115143 TRANSLATION protein_coding stop - 3 147.0 1.0 2.5 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000029507 Pus1 ENSMUST00000086643 ENSMUSP00000083844 TRANSLATION protein_coding - CCDS19530.1 1 441.0 1.0 3.5 0.0 51.7 0.0 -3,0 0.1822 9 12.0 MINOR ENSMUSG00000043913 Ccdc60 ENSMUST00000086483 ENSMUSP00000083671 TRANSLATION protein_coding - - 1 207.0 0.0 0.0 0.0 181.5 0.0 -4,-6 0.0005 - 0.0 MINOR ENSMUSG00000043913 Ccdc60 ENSMUST00000050178 ENSMUSP00000049912 TRANSLATION protein_coding - CCDS19599.1 1 545.0 0.0 0.0 0.1 735.4 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054256 Msi1 ENSMUST00000139918 - NO_TRANSLATION retained_intron ENSMUSG00000054256 Msi1 ENSMUST00000067168 ENSMUSP00000070415 TRANSLATION protein_coding start - 5 325.0 0.0 5.88 0.0 104.5 0.0 -4,-5 0.0103 6 -2.0 MINOR ENSMUSG00000054256 Msi1 ENSMUST00000130849 - NO_TRANSLATION retained_intron ENSMUSG00000054256 Msi1 ENSMUST00000131079 ENSMUSP00000144032 TRANSLATION protein_coding start/stop - 5 269.0 0.0 5.814 0.0 99.6 0.0 -4,-5 0.0009 5 -2.0 MINOR ENSMUSG00000054256 Msi1 ENSMUST00000136586 ENSMUSP00000143900 TRANSLATION protein_coding stop - 5 196.0 0.0 3.55 0.0 54.7 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000054256 Msi1 ENSMUST00000151444 - NO_TRANSLATION retained_intron ENSMUSG00000054256 Msi1 ENSMUST00000145840 - NO_TRANSLATION retained_intron ENSMUSG00000054256 Msi1 ENSMUST00000145005 - NO_TRANSLATION retained_intron ENSMUSG00000054256 Msi1 ENSMUST00000150779 ENSMUSP00000120516 TRANSLATION protein_coding - CCDS19591.1 1 362.0 0.0 6.51 10.6 113.4 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000001098 Kctd10 ENSMUST00000102581 ENSMUSP00000099641 TRANSLATION protein_coding - CCDS19563.1 1 315.0 0.0 4.85 29.0 74.6 0.0 -4,-5 0.9839 8 11.502 PRINCIPAL:3 ENSMUSG00000001098 Kctd10 ENSMUST00000135170 - NO_TRANSLATION retained_intron ENSMUSG00000001098 Kctd10 ENSMUST00000132646 - NO_TRANSLATION retained_intron ENSMUSG00000001098 Kctd10 ENSMUST00000001125 ENSMUSP00000001125 TRANSLATION protein_coding - CCDS51623.1 5 316.0 0.0 5.1 29.0 74.6 0.0 -4,-5 1.0 7 12.0 ALTERNATIVE:1 ENSMUSG00000001098 Kctd10 ENSMUST00000123538 - NO_TRANSLATION retained_intron ENSMUSG00000001098 Kctd10 ENSMUST00000134173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001098 Kctd10 ENSMUST00000134532 ENSMUSP00000138564 TRANSLATION nonsense_mediated_decay - - 5 100.0 0.0 1.0 0.0 24.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029458 Brap ENSMUST00000127703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029458 Brap ENSMUST00000148052 - NO_TRANSLATION retained_intron ENSMUSG00000029458 Brap ENSMUST00000111765 ENSMUSP00000107395 TRANSLATION protein_coding - CCDS80389.1 1 561.0 11.0 1.54 1.8 228.8 0.0 -4,-5 0.3913 16 18.212 MINOR ENSMUSG00000029458 Brap ENSMUST00000142701 ENSMUSP00000143043 TRANSLATION protein_coding start - 1 199.0 0.0 0.0 0.0 71.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000029458 Brap ENSMUST00000132491 - NO_TRANSLATION retained_intron ENSMUSG00000029458 Brap ENSMUST00000140996 ENSMUSP00000122536 TRANSLATION nonsense_mediated_decay - - 1 83.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000029458 Brap ENSMUST00000031414 ENSMUSP00000031414 TRANSLATION protein_coding - CCDS19640.1 1 591.0 11.0 1.54 16.0 228.8 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000029458 Brap ENSMUST00000195952 ENSMUSP00000143350 TRANSLATION nonsense_mediated_decay start - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029458 Brap ENSMUST00000196897 - NO_TRANSLATION retained_intron ENSMUSG00000035505 Cox18 ENSMUST00000048363 ENSMUSP00000044144 TRANSLATION protein_coding - CCDS19411.1 1 331.0 0.0 6.0 4.7 0.0 4.0 -1,3 1.0 3 8.0 PRINCIPAL:4 ENSMUSG00000035505 Cox18 ENSMUST00000144898 - NO_TRANSLATION retained_intron ENSMUSG00000035505 Cox18 ENSMUST00000118816 ENSMUSP00000113353 TRANSLATION protein_coding - CCDS51543.1 1 332.0 0.0 6.0 4.7 0.0 4.0 -1,3 0.9724 3 8.0 ALTERNATIVE:1 ENSMUSG00000035505 Cox18 ENSMUST00000133905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035505 Cox18 ENSMUST00000131068 - NO_TRANSLATION retained_intron ENSMUSG00000035505 Cox18 ENSMUST00000200475 - NO_TRANSLATION retained_intron ENSMUSG00000035505 Cox18 ENSMUST00000148480 ENSMUSP00000116430 TRANSLATION nonsense_mediated_decay - - 2 124.0 0.0 1.0 0.0 0.0 0.0 -1,3 0.0194 - -2.0 MINOR ENSMUSG00000023353 Agap3 ENSMUST00000199856 ENSMUSP00000142529 TRANSLATION protein_coding - - 5 578.0 15.0 4.5 2.1 62.6 0.0 -4,-6 0.2698 9 4.336 MINOR ENSMUSG00000023353 Agap3 ENSMUST00000197513 ENSMUSP00000142875 TRANSLATION protein_coding start - 1 445.0 4.0 5.88 0.0 200.8 0.0 -4,-7 0.0219 5 -2.0 MINOR ENSMUSG00000023353 Agap3 ENSMUST00000199250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023353 Agap3 ENSMUST00000199647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023353 Agap3 ENSMUST00000024123 ENSMUSP00000024123 TRANSLATION protein_coding - CCDS19122.1 1 910.0 19.0 10.38 0.0 219.7 0.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000023353 Agap3 ENSMUST00000212381 ENSMUSP00000148770 TRANSLATION protein_coding - - 5 396.0 15.0 4.5 0.0 62.6 0.0 -4,-7 0.0 6 3.336 MINOR ENSMUSG00000035851 Ythdc1 ENSMUST00000198167 - NO_TRANSLATION retained_intron ENSMUSG00000035851 Ythdc1 ENSMUST00000148142 - NO_TRANSLATION retained_intron ENSMUSG00000035851 Ythdc1 ENSMUST00000151489 - NO_TRANSLATION retained_intron ENSMUSG00000035851 Ythdc1 ENSMUST00000038384 ENSMUSP00000039133 TRANSLATION protein_coding - CCDS39127.1 5 736.0 0.0 5.41 0.0 137.4 0.0 -4,-5 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000035851 Ythdc1 ENSMUST00000120498 ENSMUSP00000113951 TRANSLATION protein_coding - CCDS84898.1 5 728.0 0.0 5.41 0.0 137.4 0.0 -4,-5 0.5161 7 8.0 ALTERNATIVE:2 ENSMUSG00000035851 Ythdc1 ENSMUST00000156363 ENSMUSP00000122491 TRANSLATION nonsense_mediated_decay - - 5 545.0 0.0 4.91 0.0 137.4 0.0 -4,-5 0.014 3 -2.0 MINOR ENSMUSG00000035851 Ythdc1 ENSMUST00000124123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035851 Ythdc1 ENSMUST00000123625 - NO_TRANSLATION retained_intron ENSMUSG00000035851 Ythdc1 ENSMUST00000119339 ENSMUSP00000113000 TRANSLATION protein_coding - CCDS84899.1 5 710.0 0.0 4.91 0.0 137.4 0.0 -4,-5 0.2045 6 6.998 ALTERNATIVE:2 ENSMUSG00000007207 Stx1a ENSMUST00000201008 ENSMUSP00000144082 TRANSLATION protein_coding stop - 5 158.0 0.0 4.265 0.0 89.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000007207 Stx1a ENSMUST00000156626 - NO_TRANSLATION retained_intron ENSMUSG00000007207 Stx1a ENSMUST00000133812 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007207 Stx1a ENSMUST00000005509 ENSMUSP00000005509 TRANSLATION protein_coding - CCDS19731.1 1 288.0 0.0 7.765 33.9 295.0 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000007207 Stx1a ENSMUST00000150838 ENSMUSP00000117144 TRANSLATION nonsense_mediated_decay - - 1 256.0 0.0 6.015 0.0 214.2 0.0 -4,-5 0.0024 14 -2.0 MINOR ENSMUSG00000007207 Stx1a ENSMUST00000144198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001566 Mnx1 ENSMUST00000165512 ENSMUSP00000129503 TRANSLATION protein_coding - CCDS19150.1 1 404.0 0.0 1.5 0.0 75.6 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066975 Cryba4 ENSMUST00000086629 ENSMUSP00000083826 TRANSLATION protein_coding - CCDS19536.1 1 196.0 0.0 4.3 30.9 181.7 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000066975 Cryba4 ENSMUST00000112385 ENSMUSP00000108004 TRANSLATION protein_coding - CCDS19536.1 1 196.0 0.0 4.3 30.9 181.7 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000066975 Cryba4 ENSMUST00000112383 ENSMUSP00000108002 TRANSLATION protein_coding - CCDS84931.1 1 183.0 0.0 4.0 0.0 180.6 0.0 -4,-5 0.0578 10 11.334 MINOR ENSMUSG00000029397 Rchy1 ENSMUST00000031345 ENSMUSP00000031345 TRANSLATION protein_coding - CCDS19424.1 1 261.0 32.0 7.33 12.3 212.5 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000029397 Rchy1 ENSMUST00000169948 ENSMUSP00000131270 TRANSLATION protein_coding - CCDS71613.1 3 221.0 24.0 6.33 4.1 139.6 0.0 -4,-5 0.0706 7 7.116 MINOR ENSMUSG00000029397 Rchy1 ENSMUST00000200905 - NO_TRANSLATION retained_intron ENSMUSG00000029397 Rchy1 ENSMUST00000140670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029397 Rchy1 ENSMUST00000138351 - NO_TRANSLATION retained_intron ENSMUSG00000058013 Septin11 ENSMUST00000202196 ENSMUSP00000144573 TRANSLATION protein_coding stop - 5 204.0 13.0 4.5 0.0 229.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000058013 Septin11 ENSMUST00000202217 ENSMUSP00000144235 TRANSLATION protein_coding - CCDS84906.1 5 432.0 18.0 8.13 17.8 330.3 0.0 -4,-5 0.9785 11 17.084 ALTERNATIVE:1 ENSMUSG00000058013 Septin11 ENSMUST00000201700 ENSMUSP00000143901 TRANSLATION protein_coding - - 2 425.0 18.0 8.13 13.5 330.3 0.0 -4,-5 0.8056 11 16.292 MINOR ENSMUSG00000058013 Septin11 ENSMUST00000202308 ENSMUSP00000144136 TRANSLATION protein_coding - CCDS80332.1 5 425.0 18.0 8.13 17.9 330.3 0.0 -4,-5 0.9815 11 17.1 ALTERNATIVE:1 ENSMUSG00000058013 Septin11 ENSMUST00000201695 - NO_TRANSLATION retained_intron ENSMUSG00000058013 Septin11 ENSMUST00000201421 ENSMUSP00000143928 TRANSLATION protein_coding - CCDS80331.1 1 431.0 18.0 8.13 15.9 330.3 0.0 -4,-5 0.9629 12 16.732 MINOR ENSMUSG00000058013 Septin11 ENSMUST00000202415 ENSMUSP00000144360 TRANSLATION protein_coding stop - 3 97.0 7.0 1.83 0.0 41.3 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000058013 Septin11 ENSMUST00000074733 ENSMUSP00000074293 TRANSLATION protein_coding - CCDS51549.1 1 429.0 18.0 8.13 22.8 330.3 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:4 ENSMUSG00000058013 Septin11 ENSMUST00000201377 - NO_TRANSLATION retained_intron ENSMUSG00000044092 C130050O18Rik ENSMUST00000164078 ENSMUSP00000131619 TRANSLATION nonsense_mediated_decay - - 1 50.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0425 - -2.0 MINOR ENSMUSG00000044092 C130050O18Rik ENSMUST00000163940 ENSMUSP00000127769 TRANSLATION protein_coding - CCDS39352.1 1 356.0 0.0 0.0 0.0 0.0 5.0 -4,-7 0.8843 - 0.0 PRINCIPAL:1 ENSMUSG00000044092 C130050O18Rik ENSMUST00000052176 ENSMUSP00000055600 TRANSLATION protein_coding - CCDS39352.1 1 356.0 0.0 0.0 0.0 0.0 5.0 -4,-7 0.8843 - 0.0 PRINCIPAL:1 ENSMUSG00000029152 Ociad1 ENSMUST00000201191 - NO_TRANSLATION retained_intron ENSMUSG00000029152 Ociad1 ENSMUST00000166823 ENSMUSP00000128805 TRANSLATION protein_coding - CCDS51518.1 1 189.0 0.0 1.83 9.1 122.5 0.0 -4,-5 0.822 5 10.25 ALTERNATIVE:1 ENSMUSG00000029152 Ociad1 ENSMUST00000201505 ENSMUSP00000143869 TRANSLATION protein_coding stop - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029152 Ociad1 ENSMUST00000201556 ENSMUSP00000144227 TRANSLATION protein_coding - - 3 136.0 0.0 1.83 0.0 122.5 0.0 -4,-5 0.0164 3 8.0 MINOR ENSMUSG00000029152 Ociad1 ENSMUST00000031038 ENSMUSP00000031038 TRANSLATION protein_coding - CCDS19339.1 1 247.0 0.0 1.83 11.8 122.5 0.0 -4,-5 1.0 6 11.0 PRINCIPAL:3 ENSMUSG00000029152 Ociad1 ENSMUST00000202250 ENSMUSP00000143799 TRANSLATION protein_coding - CCDS51518.1 2 189.0 0.0 1.83 9.1 122.5 0.0 -4,-5 0.822 5 10.25 ALTERNATIVE:1 ENSMUSG00000029152 Ociad1 ENSMUST00000201739 ENSMUSP00000143867 TRANSLATION nonsense_mediated_decay start - 5 25.0 0.0 0.33 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029152 Ociad1 ENSMUST00000202237 ENSMUSP00000144102 TRANSLATION protein_coding stop - 2 178.0 0.0 1.83 0.0 73.1 0.0 -4,-6 0.0145 4 -2.0 MINOR ENSMUSG00000029152 Ociad1 ENSMUST00000071081 ENSMUSP00000069412 TRANSLATION protein_coding - CCDS51518.1 3 189.0 0.0 1.83 9.1 122.5 0.0 -4,-5 0.822 5 10.25 ALTERNATIVE:1 ENSMUSG00000029152 Ociad1 ENSMUST00000200935 ENSMUSP00000144515 TRANSLATION protein_coding - CCDS80300.1 1 196.0 0.0 1.83 9.1 122.5 0.0 -4,-5 0.8262 5 10.25 ALTERNATIVE:1 ENSMUSG00000079091 Gm3404 ENSMUST00000110596 ENSMUSP00000106226 TRANSLATION protein_coding - CCDS57404.1 1 307.0 0.0 2.5 0.0 28.7 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042328 Hps4 ENSMUST00000133708 - NO_TRANSLATION retained_intron ENSMUSG00000042328 Hps4 ENSMUST00000129839 - NO_TRANSLATION retained_intron ENSMUSG00000042328 Hps4 ENSMUST00000112359 ENSMUSP00000107978 TRANSLATION protein_coding - CCDS19540.1 5 671.0 0.0 0.0 0.3 0.0 0.0 -4,-6 0.8943 7 0.0 PRINCIPAL:1 ENSMUSG00000042328 Hps4 ENSMUST00000176737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042328 Hps4 ENSMUST00000035279 ENSMUSP00000047920 TRANSLATION protein_coding - CCDS19540.1 1 671.0 0.0 0.0 0.3 0.0 0.0 -4,-6 0.8943 7 0.0 PRINCIPAL:1 ENSMUSG00000042328 Hps4 ENSMUST00000175718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042328 Hps4 ENSMUST00000177121 - NO_TRANSLATION retained_intron ENSMUSG00000079451 Tmprss11g ENSMUST00000140095 ENSMUSP00000115540 TRANSLATION protein_coding - - 5 404.0 6.0 3.6 0.1 311.0 1.0 -2,-5 0.1412 2 18.0 MINOR ENSMUSG00000079451 Tmprss11g ENSMUST00000199703 - NO_TRANSLATION retained_intron ENSMUSG00000079451 Tmprss11g ENSMUST00000134179 ENSMUSP00000122709 TRANSLATION protein_coding - CCDS51532.1 1 417.0 6.0 3.6 6.8 311.0 1.0 -2,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000090963 Gm17655 ENSMUST00000210275 ENSMUSP00000148155 TRANSLATION protein_coding - - 5 591.0 68.0 3.0 0.0 433.6 0.0 -1,-4 0.8361 - 18.0 PRINCIPAL:1 ENSMUSG00000090963 Gm17655 ENSMUST00000167969 ENSMUSP00000128849 TRANSLATION protein_coding start/stop - - 85.0 12.0 1.0 0.0 67.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002221 Paxip1 ENSMUST00000196605 - NO_TRANSLATION retained_intron ENSMUSG00000002221 Paxip1 ENSMUST00000196734 ENSMUSP00000142578 TRANSLATION nonsense_mediated_decay - - 3 92.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002221 Paxip1 ENSMUST00000002291 ENSMUSP00000002291 TRANSLATION protein_coding - CCDS39039.1 1 1056.0 0.0 8.22 0.0 255.3 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000002221 Paxip1 ENSMUST00000196641 - NO_TRANSLATION retained_intron ENSMUSG00000002221 Paxip1 ENSMUST00000199714 - NO_TRANSLATION retained_intron ENSMUSG00000002221 Paxip1 ENSMUST00000197625 - NO_TRANSLATION retained_intron ENSMUSG00000002221 Paxip1 ENSMUST00000199993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029205 Chrna9 ENSMUST00000202957 ENSMUSP00000144147 TRANSLATION protein_coding stop - 3 16.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029205 Chrna9 ENSMUST00000202234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029205 Chrna9 ENSMUST00000201664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029205 Chrna9 ENSMUST00000201814 ENSMUSP00000144364 TRANSLATION protein_coding stop - 3 258.0 0.0 3.5 0.0 229.0 2.0 -4,-6 0.0005 - -2.0 MINOR ENSMUSG00000029205 Chrna9 ENSMUST00000200881 - NO_TRANSLATION retained_intron ENSMUSG00000029205 Chrna9 ENSMUST00000031108 ENSMUSP00000031108 TRANSLATION protein_coding - CCDS39101.1 1 479.0 0.0 4.665 6.8 396.0 4.0 -2,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029205 Chrna9 ENSMUST00000202735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043510 Hscb ENSMUST00000122921 - NO_TRANSLATION retained_intron ENSMUSG00000043510 Hscb ENSMUST00000145318 ENSMUSP00000120926 TRANSLATION protein_coding start - 3 91.0 2.0 2.5 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000043510 Hscb ENSMUST00000144850 ENSMUSP00000118876 TRANSLATION nonsense_mediated_decay start - 5 37.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000043510 Hscb ENSMUST00000056937 ENSMUSP00000062811 TRANSLATION protein_coding - CCDS51613.1 1 234.0 5.0 4.75 11.8 67.6 0.0 -2,0 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000051950 B3glct ENSMUST00000100404 ENSMUSP00000097972 TRANSLATION protein_coding - CCDS39410.1 1 489.0 0.0 11.25 0.3 215.7 0.0 -1,-2 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000051950 B3glct ENSMUST00000201088 - NO_TRANSLATION retained_intron ENSMUSG00000051950 B3glct ENSMUST00000202302 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055725 Paqr3 ENSMUST00000112968 ENSMUSP00000108592 TRANSLATION protein_coding - - 1 171.0 0.0 3.0 0.0 90.3 5.0 -4,-6 0.0163 2 1.392 MINOR ENSMUSG00000055725 Paqr3 ENSMUST00000126585 - NO_TRANSLATION retained_intron ENSMUSG00000055725 Paqr3 ENSMUST00000132127 - NO_TRANSLATION retained_intron ENSMUSG00000055725 Paqr3 ENSMUST00000112969 ENSMUSP00000108593 TRANSLATION protein_coding - CCDS19451.1 1 311.0 0.0 6.75 28.2 167.1 9.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000055725 Paqr3 ENSMUST00000069453 ENSMUSP00000069324 TRANSLATION protein_coding - CCDS19451.1 1 311.0 0.0 6.75 28.2 167.1 9.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000055725 Paqr3 ENSMUST00000196078 ENSMUSP00000142871 TRANSLATION protein_coding stop - 3 228.0 0.0 4.5 0.0 90.3 6.0 -4,-6 0.0029 2 -2.0 MINOR ENSMUSG00000041870 Ankrd13a ENSMUST00000131803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041870 Ankrd13a ENSMUST00000137519 ENSMUSP00000116994 TRANSLATION protein_coding start/stop - 5 454.0 0.0 0.844 0.0 334.5 0.0 -4,-5 0.0024 10 -2.0 MINOR ENSMUSG00000041870 Ankrd13a ENSMUST00000140604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041870 Ankrd13a ENSMUST00000129001 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041870 Ankrd13a ENSMUST00000102578 ENSMUSP00000099638 TRANSLATION protein_coding - CCDS19572.1 1 588.0 0.0 2.344 13.6 371.2 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000041870 Ankrd13a ENSMUST00000200704 - NO_TRANSLATION retained_intron ENSMUSG00000034110 Kctd7 ENSMUST00000144878 ENSMUSP00000143940 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034110 Kctd7 ENSMUST00000144467 ENSMUSP00000121490 TRANSLATION protein_coding start/stop - 3 232.0 0.0 1.8 0.0 69.6 0.0 -4,-5 0.0061 1 -2.0 MINOR ENSMUSG00000034110 Kctd7 ENSMUST00000040616 ENSMUSP00000044568 TRANSLATION protein_coding - CCDS19707.1 1 289.0 0.0 2.2 17.0 69.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000002748 Baz1b ENSMUST00000142307 - NO_TRANSLATION retained_intron ENSMUSG00000002748 Baz1b ENSMUST00000002825 ENSMUSP00000002825 TRANSLATION protein_coding - CCDS19736.1 1 1479.0 8.0 2.3 0.1 316.9 0.0 -4,-6 1.0 34 18.0 PRINCIPAL:1 ENSMUSG00000002748 Baz1b ENSMUST00000176793 - NO_TRANSLATION retained_intron ENSMUSG00000002748 Baz1b ENSMUST00000201894 - NO_TRANSLATION retained_intron ENSMUSG00000002748 Baz1b ENSMUST00000136947 - NO_TRANSLATION retained_intron ENSMUSG00000040351 Ankib1 ENSMUST00000199763 - NO_TRANSLATION retained_intron ENSMUSG00000040351 Ankib1 ENSMUST00000199043 - NO_TRANSLATION retained_intron ENSMUSG00000040351 Ankib1 ENSMUST00000198344 - NO_TRANSLATION retained_intron ENSMUSG00000040351 Ankib1 ENSMUST00000200335 ENSMUSP00000142687 TRANSLATION protein_coding stop - 1 809.0 20.0 4.595 0.0 128.0 0.0 -4,-5 0.0667 15 -2.0 MINOR ENSMUSG00000040351 Ankib1 ENSMUST00000043551 ENSMUSP00000040946 TRANSLATION protein_coding - CCDS51408.1 1 1085.0 20.0 4.595 13.0 128.0 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000040351 Ankib1 ENSMUST00000200052 - NO_TRANSLATION retained_intron ENSMUSG00000028999 Rint1 ENSMUST00000115113 ENSMUSP00000110766 TRANSLATION protein_coding - CCDS80220.1 1 734.0 0.0 0.0 0.0 446.5 0.0 -4,-5 0.1896 10 6.0 MINOR ENSMUSG00000028999 Rint1 ENSMUST00000196607 - NO_TRANSLATION retained_intron ENSMUSG00000028999 Rint1 ENSMUST00000120869 ENSMUSP00000112671 TRANSLATION protein_coding - - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028999 Rint1 ENSMUST00000030852 ENSMUSP00000030852 TRANSLATION protein_coding - CCDS39025.1 1 792.0 0.0 0.0 6.2 446.5 0.0 -4,-5 1.0 10 8.0 PRINCIPAL:1 ENSMUSG00000028999 Rint1 ENSMUST00000117783 ENSMUSP00000112763 TRANSLATION protein_coding - - 1 60.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000028999 Rint1 ENSMUST00000144709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028999 Rint1 ENSMUST00000124680 - NO_TRANSLATION retained_intron ENSMUSG00000028999 Rint1 ENSMUST00000112256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028999 Rint1 ENSMUST00000132260 - NO_TRANSLATION retained_intron ENSMUSG00000000915 Hip1r ENSMUST00000167879 ENSMUSP00000127361 TRANSLATION protein_coding stop - 3 117.0 3.0 1.4 0.0 94.0 0.0 -4,-7 0.0005 3 -2.0 MINOR ENSMUSG00000000915 Hip1r ENSMUST00000166684 - NO_TRANSLATION retained_intron ENSMUSG00000000915 Hip1r ENSMUST00000198664 ENSMUSP00000143309 TRANSLATION nonsense_mediated_decay start - 3 165.0 0.0 3.83 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000000915 Hip1r ENSMUST00000167325 - NO_TRANSLATION retained_intron ENSMUSG00000000915 Hip1r ENSMUST00000166258 ENSMUSP00000130766 TRANSLATION nonsense_mediated_decay start - 5 141.0 0.0 0.71 0.0 68.1 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000000915 Hip1r ENSMUST00000000939 ENSMUSP00000000939 TRANSLATION protein_coding - CCDS39276.1 1 1068.0 3.0 12.209 14.1 541.8 0.0 -4,-2 1.0 40 19.0 PRINCIPAL:1 ENSMUSG00000000915 Hip1r ENSMUST00000171407 - NO_TRANSLATION retained_intron ENSMUSG00000029167 Ppargc1a ENSMUST00000031059 ENSMUSP00000138397 TRANSLATION nonsense_mediated_decay - - 1 270.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0011 - -2.0 MINOR ENSMUSG00000029167 Ppargc1a ENSMUST00000132734 ENSMUSP00000117040 TRANSLATION protein_coding - CCDS19282.1 1 797.0 0.0 1.6 16.7 30.2 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029167 Ppargc1a ENSMUST00000196968 ENSMUSP00000143553 TRANSLATION protein_coding - - 5 696.0 0.0 0.0 1.0 0.0 0.0 -4,-6 0.0269 - 0.0 MINOR ENSMUSG00000029167 Ppargc1a ENSMUST00000151104 ENSMUSP00000116566 TRANSLATION nonsense_mediated_decay - - 1 266.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 - -2.0 MINOR ENSMUSG00000029167 Ppargc1a ENSMUST00000127135 ENSMUSP00000115586 TRANSLATION protein_coding stop - 5 142.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000002944 Cd36 ENSMUST00000197574 ENSMUSP00000143107 TRANSLATION protein_coding stop - 5 142.0 0.0 3.0 0.0 123.6 1.0 -2,-5 0.0015 3 -2.0 MINOR ENSMUSG00000002944 Cd36 ENSMUST00000165232 ENSMUSP00000126300 TRANSLATION protein_coding - CCDS19100.1 1 472.0 0.0 10.5 12.5 498.2 2.0 -2,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000002944 Cd36 ENSMUST00000082367 ENSMUSP00000080974 TRANSLATION protein_coding - CCDS19100.1 1 472.0 0.0 10.5 12.5 498.2 2.0 -2,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000002944 Cd36 ENSMUST00000170051 ENSMUSP00000133008 TRANSLATION protein_coding - CCDS19100.1 1 472.0 0.0 10.5 12.5 498.2 2.0 -2,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000002944 Cd36 ENSMUST00000197890 ENSMUSP00000143061 TRANSLATION protein_coding - CCDS19100.1 1 472.0 0.0 10.5 12.5 498.2 2.0 -2,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000002944 Cd36 ENSMUST00000169095 ENSMUSP00000131832 TRANSLATION protein_coding - CCDS19100.1 1 472.0 0.0 10.5 12.5 498.2 2.0 -2,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000061979 Rcc1l ENSMUST00000126113 - NO_TRANSLATION retained_intron ENSMUSG00000061979 Rcc1l ENSMUST00000156574 - NO_TRANSLATION retained_intron ENSMUSG00000061979 Rcc1l ENSMUST00000076228 ENSMUSP00000075581 TRANSLATION protein_coding - CCDS19718.1 1 461.0 0.0 9.3 0.4 159.1 0.0 -4,0 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000029106 Add1 ENSMUST00000052836 ENSMUSP00000052266 TRANSLATION protein_coding - - 5 662.0 3.0 4.225 15.1 149.3 0.0 -4,-6 0.8844 25 15.0 ALTERNATIVE:1 ENSMUSG00000029106 Add1 ENSMUST00000144226 - NO_TRANSLATION retained_intron ENSMUSG00000029106 Add1 ENSMUST00000147574 ENSMUSP00000116075 TRANSLATION protein_coding stop - 3 141.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000029106 Add1 ENSMUST00000114340 ENSMUSP00000109979 TRANSLATION protein_coding - CCDS19216.1 5 735.0 3.0 4.225 7.8 149.3 0.0 -4,-6 0.7425 26 12.928 MINOR ENSMUSG00000029106 Add1 ENSMUST00000135321 ENSMUSP00000114984 TRANSLATION protein_coding start/stop - 5 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029106 Add1 ENSMUST00000001108 ENSMUSP00000001108 TRANSLATION protein_coding - CCDS51471.1 1 663.0 3.0 4.225 13.1 149.3 0.0 -4,-6 1.0 26 14.432 PRINCIPAL:4 ENSMUSG00000029106 Add1 ENSMUST00000137262 - NO_TRANSLATION retained_intron ENSMUSG00000029106 Add1 ENSMUST00000145986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029106 Add1 ENSMUST00000152805 ENSMUSP00000121402 TRANSLATION protein_coding start - 5 160.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000029106 Add1 ENSMUST00000139044 - NO_TRANSLATION retained_intron ENSMUSG00000029106 Add1 ENSMUST00000201810 ENSMUSP00000144673 TRANSLATION protein_coding start/stop - 3 248.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 8 -2.0 MINOR ENSMUSG00000029106 Add1 ENSMUST00000114335 ENSMUSP00000109974 TRANSLATION protein_coding - - 5 660.0 3.0 4.225 11.1 149.3 0.0 -4,-6 0.833 24 13.864 MINOR ENSMUSG00000029106 Add1 ENSMUST00000201368 - NO_TRANSLATION retained_intron ENSMUSG00000029106 Add1 ENSMUST00000146295 ENSMUSP00000118539 TRANSLATION protein_coding stop - 3 141.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000029106 Add1 ENSMUST00000114338 ENSMUSP00000109977 TRANSLATION protein_coding - CCDS39069.1 1 632.0 3.0 4.225 12.3 149.3 0.0 -4,-6 0.9417 26 14.204 ALTERNATIVE:1 ENSMUSG00000090326 Dthd1 ENSMUST00000238474 ENSMUSP00000158635 TRANSLATION protein_coding - - - 905.0 0.0 0.266 4.1 37.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000090326 Dthd1 ENSMUST00000170704 ENSMUSP00000131534 TRANSLATION protein_coding - CCDS51507.1 5 795.0 0.0 0.266 0.0 37.0 0.0 -4,-5 0.3418 - 12.0 MINOR ENSMUSG00000028938 Galntl5 ENSMUST00000030778 ENSMUSP00000030778 TRANSLATION protein_coding - CCDS19132.1 1 431.0 9.0 6.72 0.3 98.9 0.0 -1,-5 0.2524 - 14.0 ALTERNATIVE:2 ENSMUSG00000028938 Galntl5 ENSMUST00000114965 ENSMUSP00000110616 TRANSLATION protein_coding - - 1 398.0 9.0 6.72 0.0 98.9 0.0 -4,-5 0.7467 - 14.0 PRINCIPAL:2 ENSMUSG00000028978 Nos3 ENSMUST00000115090 ENSMUSP00000110742 TRANSLATION protein_coding - - 1 1106.0 77.0 17.139 0.0 1097.9 0.0 -4,-5 0.0784 22 9.348 MINOR ENSMUSG00000028978 Nos3 ENSMUST00000030834 ENSMUSP00000030834 TRANSLATION protein_coding - CCDS19117.1 1 1202.0 83.0 18.939 9.1 1115.4 0.0 -4,-5 1.0 26 21.0 PRINCIPAL:1 ENSMUSG00000053863 Mepe ENSMUST00000066207 ENSMUSP00000065200 TRANSLATION protein_coding - CCDS51578.1 1 441.0 0.0 0.0 0.0 243.5 0.0 3,-1 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000059866 Tnip2 ENSMUST00000114359 ENSMUSP00000109999 TRANSLATION protein_coding - - 5 347.0 3.0 1.0 1.0 0.0 0.0 -4,-7 0.0425 7 6.75 MINOR ENSMUSG00000059866 Tnip2 ENSMUST00000159102 - NO_TRANSLATION retained_intron ENSMUSG00000059866 Tnip2 ENSMUST00000137555 - NO_TRANSLATION retained_intron ENSMUSG00000059866 Tnip2 ENSMUST00000143072 - NO_TRANSLATION retained_intron ENSMUSG00000059866 Tnip2 ENSMUST00000030991 ENSMUSP00000030991 TRANSLATION protein_coding - - 1 451.0 4.0 1.6 0.0 99.9 0.0 -4,-7 0.0666 8 16.0 MINOR ENSMUSG00000059866 Tnip2 ENSMUST00000087737 ENSMUSP00000085030 TRANSLATION protein_coding - CCDS19214.1 1 430.0 4.0 1.6 4.2 99.9 0.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000118662 Tctn2 ENSMUST00000239501 ENSMUSP00000159383 TRANSLATION protein_coding - - - 700.0 0.0 0.0 0.1 241.2 0.0 3,-1 0.8039 5 6.0 PRINCIPAL:1 ENSMUSG00000118662 Tctn2 ENSMUST00000239505 - NO_TRANSLATION retained_intron ENSMUSG00000118662 Tctn2 ENSMUST00000239503 - NO_TRANSLATION retained_intron ENSMUSG00000118662 Tctn2 ENSMUST00000239504 - NO_TRANSLATION retained_intron ENSMUSG00000118662 Tctn2 ENSMUST00000239502 - NO_TRANSLATION retained_intron ENSMUSG00000095789 Nupr1l ENSMUST00000195766 ENSMUSP00000141660 TRANSLATION nonsense_mediated_decay - CCDS51654.1 1 102.0 0.0 0.0 1.3 70.0 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000095789 Nupr1l ENSMUST00000192787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095789 Nupr1l ENSMUST00000194521 ENSMUSP00000142125 TRANSLATION nonsense_mediated_decay - CCDS51654.1 1 102.0 0.0 0.0 1.3 70.0 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000095789 Nupr1l ENSMUST00000178355 ENSMUSP00000137364 TRANSLATION protein_coding - CCDS51654.1 - 102.0 0.0 0.0 1.3 70.0 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000029504 Ddx51 ENSMUST00000136442 - NO_TRANSLATION retained_intron ENSMUSG00000029504 Ddx51 ENSMUST00000148773 ENSMUSP00000121481 TRANSLATION nonsense_mediated_decay start - 2 34.0 0.0 0.7 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029504 Ddx51 ENSMUST00000143087 - NO_TRANSLATION retained_intron ENSMUSG00000029504 Ddx51 ENSMUST00000031478 ENSMUSP00000031478 TRANSLATION protein_coding - CCDS19528.1 1 639.0 12.0 6.67 0.4 226.1 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000029504 Ddx51 ENSMUST00000136629 - NO_TRANSLATION retained_intron ENSMUSG00000029636 Wasf3 ENSMUST00000016143 ENSMUSP00000016143 TRANSLATION protein_coding - CCDS19870.1 1 501.0 0.0 4.25 18.9 28.8 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000029636 Wasf3 ENSMUST00000238592 ENSMUSP00000158806 TRANSLATION protein_coding start/stop - - 177.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029238 Clock ENSMUST00000075159 ENSMUSP00000074656 TRANSLATION protein_coding - CCDS19360.1 1 855.0 0.0 9.375 0.7 141.9 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:4 ENSMUSG00000029238 Clock ENSMUST00000202122 ENSMUSP00000144022 TRANSLATION protein_coding - CCDS84889.1 1 854.0 0.0 9.375 0.7 141.9 0.0 -4,-5 0.9946 2 8.0 ALTERNATIVE:2 ENSMUSG00000029238 Clock ENSMUST00000202651 ENSMUSP00000143939 TRANSLATION protein_coding - CCDS19360.1 2 855.0 0.0 9.375 0.7 141.9 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:4 ENSMUSG00000029238 Clock ENSMUST00000200957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029238 Clock ENSMUST00000201052 - NO_TRANSLATION retained_intron ENSMUSG00000029238 Clock ENSMUST00000202857 - NO_TRANSLATION retained_intron ENSMUSG00000023707 Ogfod2 ENSMUST00000196627 ENSMUSP00000143698 TRANSLATION protein_coding - - 3 137.0 0.0 3.75 0.0 0.0 0.0 -4,0 0.0087 1 0.0 MINOR ENSMUSG00000023707 Ogfod2 ENSMUST00000148365 - NO_TRANSLATION retained_intron ENSMUSG00000023707 Ogfod2 ENSMUST00000198505 ENSMUSP00000142965 TRANSLATION protein_coding start - 3 187.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0196 - -2.0 MINOR ENSMUSG00000023707 Ogfod2 ENSMUST00000136955 - NO_TRANSLATION retained_intron ENSMUSG00000023707 Ogfod2 ENSMUST00000199457 ENSMUSP00000142745 TRANSLATION protein_coding start/stop - 2 152.0 0.0 4.25 0.0 0.0 0.0 -4,0 0.0092 1 -2.0 MINOR ENSMUSG00000023707 Ogfod2 ENSMUST00000130140 - NO_TRANSLATION retained_intron ENSMUSG00000023707 Ogfod2 ENSMUST00000119269 ENSMUSP00000112701 TRANSLATION protein_coding - CCDS84961.1 1 236.0 0.0 4.75 0.3 0.0 0.0 -4,0 0.1014 1 0.342 MINOR ENSMUSG00000023707 Ogfod2 ENSMUST00000024470 ENSMUSP00000024470 TRANSLATION protein_coding - CCDS19672.1 1 349.0 3.0 7.58 13.8 0.0 0.0 -4,0 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000023707 Ogfod2 ENSMUST00000131094 - NO_TRANSLATION retained_intron ENSMUSG00000023707 Ogfod2 ENSMUST00000198770 ENSMUSP00000143318 TRANSLATION nonsense_mediated_decay start - 3 106.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000043323 Fbrsl1 ENSMUST00000198415 ENSMUSP00000158851 TRANSLATION protein_coding - - - 452.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0037 - 0.0 MINOR ENSMUSG00000043323 Fbrsl1 ENSMUST00000056124 ENSMUSP00000054613 TRANSLATION protein_coding - CCDS39211.1 2 593.0 0.0 0.0 0.0 248.7 0.0 -4,-6 0.1152 1 0.0 MINOR ENSMUSG00000043323 Fbrsl1 ENSMUST00000196801 ENSMUSP00000142625 TRANSLATION nonsense_mediated_decay - - 2 497.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0063 2 -2.0 MINOR ENSMUSG00000043323 Fbrsl1 ENSMUST00000069483 ENSMUSP00000063879 TRANSLATION protein_coding - CCDS51609.1 5 1031.0 0.0 0.0 0.1 307.3 0.0 -4,-2 0.5622 3 2.0 PRINCIPAL:3 ENSMUSG00000043323 Fbrsl1 ENSMUST00000198834 ENSMUSP00000143147 TRANSLATION protein_coding - - 1 617.0 0.0 0.0 0.0 307.3 0.0 -4,-6 0.7639 1 2.0 ALTERNATIVE:2 ENSMUSG00000043323 Fbrsl1 ENSMUST00000198768 ENSMUSP00000142379 TRANSLATION protein_coding - - 3 1008.0 0.0 0.0 0.1 307.3 0.0 -4,-2 0.2825 3 2.0 ALTERNATIVE:2 ENSMUSG00000043323 Fbrsl1 ENSMUST00000200293 ENSMUSP00000143446 TRANSLATION protein_coding stop - 2 213.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0013 - -2.0 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000114204 ENSMUSP00000109842 TRANSLATION protein_coding - CCDS51476.1 5 606.0 30.0 8.195 1.0 541.3 0.0 -4,-5 0.3151 18 13.4 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000114210 ENSMUSP00000109848 TRANSLATION nonsense_mediated_decay - - 2 559.0 30.0 6.365 0.0 421.5 0.0 -4,-5 0.0032 16 -2.0 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000114203 ENSMUSP00000109841 TRANSLATION protein_coding - - 5 346.0 1.0 3.235 1.0 372.6 0.0 -4,-5 0.0441 8 0.4 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000135885 - NO_TRANSLATION retained_intron ENSMUSG00000029095 Ablim2 ENSMUST00000130209 - NO_TRANSLATION retained_intron ENSMUSG00000029095 Ablim2 ENSMUST00000151636 ENSMUSP00000123616 TRANSLATION protein_coding start/stop - 5 220.0 1.0 1.205 0.0 171.9 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000150146 ENSMUSP00000144134 TRANSLATION protein_coding - - 2 35.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000151322 ENSMUSP00000114616 TRANSLATION protein_coding start/stop - 3 195.0 0.0 0.375 0.0 178.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000130233 ENSMUSP00000118159 TRANSLATION protein_coding stop - 5 189.0 1.0 1.305 0.0 192.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000129347 ENSMUSP00000123525 TRANSLATION protein_coding - CCDS51473.1 5 664.0 30.0 8.495 1.1 606.1 0.0 -4,-5 0.3558 21 14.091 ALTERNATIVE:2 ENSMUSG00000029095 Ablim2 ENSMUST00000114206 ENSMUSP00000109844 TRANSLATION protein_coding - CCDS51475.1 5 617.0 30.0 8.195 1.0 555.7 0.0 -4,-5 0.3215 18 13.4 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000114205 ENSMUSP00000109843 TRANSLATION protein_coding - CCDS51477.1 5 573.0 30.0 8.195 2.1 546.8 0.0 -4,-5 0.4906 17 14.4 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000125378 ENSMUSP00000115931 TRANSLATION protein_coding start - 3 170.0 0.0 0.0 0.0 98.1 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000101280 ENSMUSP00000098838 TRANSLATION protein_coding - CCDS51474.1 5 607.0 30.0 8.295 0.0 499.8 0.0 -4,-5 0.1668 17 13.598 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000153529 ENSMUSP00000118019 TRANSLATION protein_coding start - 3 109.0 0.0 1.83 0.0 118.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029095 Ablim2 ENSMUST00000054598 ENSMUSP00000050571 TRANSLATION protein_coding - CCDS19235.1 1 612.0 30.0 8.395 2.1 612.4 0.0 -4,-5 1.0 19 14.802 PRINCIPAL:2 ENSMUSG00000029095 Ablim2 ENSMUST00000153025 - NO_TRANSLATION retained_intron ENSMUSG00000037936 Scarb1 ENSMUST00000137783 ENSMUSP00000117170 TRANSLATION protein_coding stop - 5 94.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000037936 Scarb1 ENSMUST00000111390 ENSMUSP00000107021 TRANSLATION protein_coding - CCDS57383.1 1 506.0 0.0 11.25 3.6 510.5 2.0 -1,-5 0.8738 6 9.004 ALTERNATIVE:2 ENSMUSG00000037936 Scarb1 ENSMUST00000127148 ENSMUSP00000122100 TRANSLATION protein_coding start - 3 176.0 0.0 3.415 0.0 146.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037936 Scarb1 ENSMUST00000135736 - NO_TRANSLATION retained_intron ENSMUSG00000037936 Scarb1 ENSMUST00000123338 - NO_TRANSLATION retained_intron ENSMUSG00000037936 Scarb1 ENSMUST00000124582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037936 Scarb1 ENSMUST00000133624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037936 Scarb1 ENSMUST00000197310 - NO_TRANSLATION retained_intron ENSMUSG00000037936 Scarb1 ENSMUST00000148373 - NO_TRANSLATION retained_intron ENSMUSG00000037936 Scarb1 ENSMUST00000156532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037936 Scarb1 ENSMUST00000086075 ENSMUSP00000083242 TRANSLATION protein_coding - CCDS19683.1 1 509.0 0.0 11.45 4.7 510.5 2.0 -1,-5 1.0 9 10.0 PRINCIPAL:3 ENSMUSG00000096846 Gm8890 ENSMUST00000164262 ENSMUSP00000127049 TRANSLATION protein_coding - - 5 199.0 0.0 1.306 0.0 80.7 0.0 -4,-2 0.7816 - 12.0 PRINCIPAL:1 ENSMUSG00000039886 Tmem120a ENSMUST00000199952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039886 Tmem120a ENSMUST00000043378 ENSMUSP00000045252 TRANSLATION protein_coding - CCDS19744.1 1 343.0 0.0 10.83 10.1 519.1 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000039886 Tmem120a ENSMUST00000127156 - NO_TRANSLATION retained_intron ENSMUSG00000039886 Tmem120a ENSMUST00000141779 - NO_TRANSLATION retained_intron ENSMUSG00000039886 Tmem120a ENSMUST00000153399 ENSMUSP00000120834 TRANSLATION protein_coding stop - 5 92.0 0.0 2.75 0.0 57.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037428 Vgf ENSMUST00000187382 ENSMUSP00000140093 TRANSLATION protein_coding stop - 2 140.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0633 - -2.0 MINOR ENSMUSG00000037428 Vgf ENSMUST00000041543 ENSMUSP00000048273 TRANSLATION protein_coding - CCDS19760.1 1 617.0 0.0 0.0 6.5 0.0 0.0 4,-1 1.0 16 2.0 PRINCIPAL:1 ENSMUSG00000037428 Vgf ENSMUST00000190827 ENSMUSP00000140815 TRANSLATION protein_coding - CCDS19760.1 1 617.0 0.0 0.0 6.5 0.0 0.0 4,-1 1.0 16 2.0 PRINCIPAL:1 ENSMUSG00000037428 Vgf ENSMUST00000186451 ENSMUSP00000140735 TRANSLATION protein_coding - CCDS19760.1 5 617.0 0.0 0.0 6.5 0.0 0.0 4,-1 1.0 16 2.0 PRINCIPAL:1 ENSMUSG00000025858 Get4 ENSMUST00000138508 ENSMUSP00000116975 TRANSLATION protein_coding stop - 5 197.0 0.0 4.35 0.0 180.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000025858 Get4 ENSMUST00000026976 ENSMUSP00000026976 TRANSLATION protein_coding - CCDS19805.1 1 327.0 0.0 7.15 7.4 255.4 0.0 -4,-6 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000025858 Get4 ENSMUST00000110878 ENSMUSP00000106502 TRANSLATION protein_coding - CCDS51682.1 1 274.0 0.0 6.15 5.1 255.4 0.0 -4,-6 0.7412 6 11.284 MINOR ENSMUSG00000025858 Get4 ENSMUST00000138059 - NO_TRANSLATION retained_intron ENSMUSG00000025858 Get4 ENSMUST00000130326 ENSMUSP00000117473 TRANSLATION protein_coding stop - 3 246.0 0.0 5.35 0.0 177.2 0.0 -4,-6 0.0003 3 -2.0 MINOR ENSMUSG00000025858 Get4 ENSMUST00000124420 - NO_TRANSLATION retained_intron ENSMUSG00000064247 Plcxd1 ENSMUST00000086687 ENSMUSP00000083892 TRANSLATION protein_coding - CCDS39208.2 1 357.0 5.0 6.33 0.0 0.0 0.0 -4,-6 0.9292 - 11.0 PRINCIPAL:1 ENSMUSG00000064247 Plcxd1 ENSMUST00000141066 ENSMUSP00000119248 TRANSLATION protein_coding stop - 2 98.0 4.0 2.5 0.0 0.0 0.0 -4,-7 0.013 - -2.0 MINOR ENSMUSG00000064247 Plcxd1 ENSMUST00000112534 ENSMUSP00000108153 TRANSLATION nonsense_mediated_decay - - 1 121.0 4.0 3.0 0.0 0.0 0.0 -4,-7 0.0085 - -2.0 MINOR ENSMUSG00000064247 Plcxd1 ENSMUST00000125748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048988 Elfn1 ENSMUST00000198608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048988 Elfn1 ENSMUST00000050519 ENSMUSP00000053869 TRANSLATION protein_coding - CCDS19816.1 1 828.0 0.0 0.0 1.4 52.5 0.0 2,-2 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000029554 Mad1l1 ENSMUST00000199237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029554 Mad1l1 ENSMUST00000031534 ENSMUSP00000031534 TRANSLATION protein_coding - CCDS19817.1 1 717.0 0.0 5.1 18.4 895.3 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000029554 Mad1l1 ENSMUST00000129747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029554 Mad1l1 ENSMUST00000110829 ENSMUSP00000106453 TRANSLATION nonsense_mediated_decay - - 1 514.0 0.0 0.8 0.0 544.4 0.0 -4,-5 0.0045 12 -2.0 MINOR ENSMUSG00000029554 Mad1l1 ENSMUST00000128579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029554 Mad1l1 ENSMUST00000132832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094840 Muc3a ENSMUST00000179412 ENSMUSP00000136061 TRANSLATION protein_coding start - 1 218.0 0.0 2.75 0.0 0.0 1.0 -4,-5 0.6681 - -2.0 PRINCIPAL:5 ENSMUSG00000094840 Muc3a ENSMUST00000196391 ENSMUSP00000143027 TRANSLATION protein_coding start - 1 217.0 0.0 2.75 0.0 0.0 1.0 -4,-5 0.2673 - -2.0 ALTERNATIVE:2 ENSMUSG00000079111 Kdelr2 ENSMUST00000110731 ENSMUSP00000106359 TRANSLATION protein_coding - CCDS39369.1 1 212.0 0.0 4.33 36.9 190.2 0.0 -2,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000029148 Nrbp1 ENSMUST00000200857 - NO_TRANSLATION retained_intron ENSMUSG00000029148 Nrbp1 ENSMUST00000202875 - NO_TRANSLATION retained_intron ENSMUSG00000029148 Nrbp1 ENSMUST00000202801 - NO_TRANSLATION retained_intron ENSMUSG00000029148 Nrbp1 ENSMUST00000201259 ENSMUSP00000144415 TRANSLATION protein_coding stop - 5 62.0 0.0 0.95 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029148 Nrbp1 ENSMUST00000031034 ENSMUSP00000031034 TRANSLATION protein_coding - CCDS19180.1 1 535.0 0.0 4.545 21.0 87.1 0.0 -4,-5 1.0 12 9.604 PRINCIPAL:4 ENSMUSG00000029148 Nrbp1 ENSMUST00000202576 ENSMUSP00000143872 TRANSLATION protein_coding - CCDS84863.1 1 543.0 0.0 4.743 18.0 83.5 0.0 -4,-5 0.9572 12 9.4 ALTERNATIVE:1 ENSMUSG00000029148 Nrbp1 ENSMUST00000201070 - NO_TRANSLATION retained_intron ENSMUSG00000029148 Nrbp1 ENSMUST00000202982 - NO_TRANSLATION retained_intron ENSMUSG00000029148 Nrbp1 ENSMUST00000200722 - NO_TRANSLATION retained_intron ENSMUSG00000029148 Nrbp1 ENSMUST00000202505 ENSMUSP00000144292 TRANSLATION protein_coding stop - 3 188.0 0.0 3.165 0.0 82.8 0.0 -4,-5 0.0011 3 -2.0 MINOR ENSMUSG00000029148 Nrbp1 ENSMUST00000202842 ENSMUSP00000143899 TRANSLATION protein_coding stop - 2 88.0 0.0 1.4 0.0 30.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028962 Slc4a2 ENSMUST00000146765 - NO_TRANSLATION retained_intron ENSMUSG00000028962 Slc4a2 ENSMUST00000155636 - NO_TRANSLATION retained_intron ENSMUSG00000028962 Slc4a2 ENSMUST00000127315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028962 Slc4a2 ENSMUST00000153274 ENSMUSP00000121652 TRANSLATION protein_coding stop - 2 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0216 - -2.0 MINOR ENSMUSG00000028962 Slc4a2 ENSMUST00000139081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028962 Slc4a2 ENSMUST00000132505 - NO_TRANSLATION retained_intron ENSMUSG00000028962 Slc4a2 ENSMUST00000155598 ENSMUSP00000118473 TRANSLATION protein_coding stop - 5 121.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000028962 Slc4a2 ENSMUST00000115047 ENSMUSP00000110699 TRANSLATION protein_coding - - 5 1223.0 0.0 10.31 0.7 1041.4 11.0 -4,-5 0.3717 8 12.0 MINOR ENSMUSG00000028962 Slc4a2 ENSMUST00000198786 - NO_TRANSLATION retained_intron ENSMUSG00000028962 Slc4a2 ENSMUST00000144305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028962 Slc4a2 ENSMUST00000115049 ENSMUSP00000110701 TRANSLATION protein_coding - - 5 1228.0 0.0 10.31 4.7 1041.4 11.0 -4,-5 0.6788 8 13.389 MINOR ENSMUSG00000028962 Slc4a2 ENSMUST00000141966 ENSMUSP00000117215 TRANSLATION protein_coding stop - 2 131.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000028962 Slc4a2 ENSMUST00000080067 ENSMUSP00000078972 TRANSLATION protein_coding - CCDS19119.1 1 1237.0 0.0 10.31 9.0 1041.4 11.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000028962 Slc4a2 ENSMUST00000140722 - NO_TRANSLATION retained_intron ENSMUSG00000028962 Slc4a2 ENSMUST00000136440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019178 Styxl1 ENSMUST00000111163 ENSMUSP00000106793 TRANSLATION protein_coding - CCDS19745.2 1 321.0 8.0 5.178 1.8 99.5 0.0 -4,-5 1.0 - 18.348 PRINCIPAL:1 ENSMUSG00000019178 Styxl1 ENSMUST00000178796 ENSMUSP00000137481 TRANSLATION protein_coding stop - 5 174.0 0.0 1.43 0.0 23.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019178 Styxl1 ENSMUST00000053906 ENSMUSP00000051216 TRANSLATION protein_coding - CCDS19745.2 1 321.0 8.0 5.178 1.8 99.5 0.0 -4,-5 1.0 - 18.348 PRINCIPAL:1 ENSMUSG00000019178 Styxl1 ENSMUST00000111162 ENSMUSP00000106792 TRANSLATION protein_coding - CCDS71680.1 5 217.0 8.0 4.18 0.0 60.5 0.0 -4,-5 0.0066 - 13.65 MINOR ENSMUSG00000019178 Styxl1 ENSMUST00000142343 ENSMUSP00000136983 TRANSLATION nonsense_mediated_decay - - 1 137.0 0.0 1.78 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019178 Styxl1 ENSMUST00000178515 ENSMUSP00000137191 TRANSLATION protein_coding - CCDS71679.1 1 177.0 8.0 4.148 3.3 76.1 0.0 -4,-5 0.305 - 15.532 MINOR ENSMUSG00000019178 Styxl1 ENSMUST00000177559 ENSMUSP00000135982 TRANSLATION protein_coding - CCDS19745.2 5 321.0 8.0 5.178 1.8 99.5 0.0 -4,-5 1.0 - 18.348 PRINCIPAL:1 ENSMUSG00000019178 Styxl1 ENSMUST00000111161 ENSMUSP00000106791 TRANSLATION protein_coding - CCDS71679.1 1 177.0 8.0 4.148 3.3 76.1 0.0 -4,-5 0.305 - 15.532 MINOR ENSMUSG00000019178 Styxl1 ENSMUST00000111164 ENSMUSP00000106794 TRANSLATION protein_coding - CCDS19745.2 1 321.0 8.0 5.178 1.8 99.5 0.0 -4,-5 1.0 - 18.348 PRINCIPAL:1 ENSMUSG00000041468 Gpr12 ENSMUST00000197825 ENSMUSP00000143415 TRANSLATION protein_coding stop - 3 152.0 0.0 1.0 0.0 54.6 5.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000041468 Gpr12 ENSMUST00000036211 ENSMUSP00000038245 TRANSLATION protein_coding - CCDS19871.1 1 334.0 0.0 3.33 30.9 104.2 9.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000041468 Gpr12 ENSMUST00000197431 ENSMUSP00000142889 TRANSLATION protein_coding - CCDS19871.1 1 334.0 0.0 3.33 30.9 104.2 9.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000041468 Gpr12 ENSMUST00000200112 ENSMUSP00000143653 TRANSLATION protein_coding stop - 2 54.0 0.0 1.0 0.0 0.0 1.0 3,-2 0.0027 - -2.0 MINOR ENSMUSG00000041468 Gpr12 ENSMUST00000196096 - NO_TRANSLATION retained_intron ENSMUSG00000039477 Tnrc18 ENSMUST00000152247 ENSMUSP00000117651 TRANSLATION protein_coding start - 5 2673.0 0.0 1.25 0.0 35.5 0.0 -4,-2 0.5369 9 -2.0 MINOR ENSMUSG00000039477 Tnrc18 ENSMUST00000155461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039477 Tnrc18 ENSMUST00000198932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039477 Tnrc18 ENSMUST00000196888 - NO_TRANSLATION retained_intron ENSMUSG00000039477 Tnrc18 ENSMUST00000151477 ENSMUSP00000114769 TRANSLATION protein_coding - CCDS19830.1 1 1755.0 0.0 0.0 0.4 0.0 0.0 -4,-6 0.6364 8 0.0 PRINCIPAL:1 ENSMUSG00000039477 Tnrc18 ENSMUST00000198181 ENSMUSP00000143178 TRANSLATION protein_coding stop - 5 114.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039477 Tnrc18 ENSMUST00000200371 - NO_TRANSLATION retained_intron ENSMUSG00000070498 Tmem132b ENSMUST00000184422 - NO_TRANSLATION retained_intron ENSMUSG00000070498 Tmem132b ENSMUST00000185104 ENSMUSP00000139013 TRANSLATION protein_coding stop - 3 168.0 0.0 0.0 0.0 103.2 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000070498 Tmem132b ENSMUST00000031446 ENSMUSP00000031446 TRANSLATION protein_coding - CCDS57384.1 5 1078.0 0.0 0.0 0.0 763.8 0.0 2,-3 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000098140 Gm26938 ENSMUST00000182839 ENSMUSP00000138120 TRANSLATION protein_coding,RT stop - 3 226.0 0.0 1.0 0.0 152.2 0.0 -4,-6 0.786 - -2.0 PRINCIPAL:1 ENSMUSG00000013495 Tmem175 ENSMUST00000063272 ENSMUSP00000068607 TRANSLATION protein_coding - CCDS19514.1 1 499.0 0.0 6.05 7.8 152.9 13.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000013495 Tmem175 ENSMUST00000200485 - NO_TRANSLATION retained_intron ENSMUSG00000013495 Tmem175 ENSMUST00000078323 ENSMUSP00000077437 TRANSLATION protein_coding - CCDS19514.1 1 499.0 0.0 6.05 7.8 152.9 13.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000013495 Tmem175 ENSMUST00000198346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013495 Tmem175 ENSMUST00000146207 ENSMUSP00000143596 TRANSLATION protein_coding - - 1 232.0 0.0 4.45 0.0 70.7 9.0 -4,-5 0.0042 1 3.87 MINOR ENSMUSG00000013495 Tmem175 ENSMUST00000120327 ENSMUSP00000112780 TRANSLATION protein_coding - CCDS19514.1 5 499.0 0.0 6.05 7.8 152.9 13.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000001467 Cyp51 ENSMUST00000199909 - NO_TRANSLATION retained_intron ENSMUSG00000001467 Cyp51 ENSMUST00000151539 - NO_TRANSLATION retained_intron ENSMUSG00000001467 Cyp51 ENSMUST00000129448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001467 Cyp51 ENSMUST00000001507 ENSMUSP00000001507 TRANSLATION protein_coding - CCDS19071.1 1 503.0 27.0 9.0 13.1 253.4 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000046572 Zfp518b ENSMUST00000180214 ENSMUSP00000136948 TRANSLATION protein_coding stop - 2 161.0 9.0 0.0 0.0 0.0 0.0 -4,-5 0.0265 - -2.0 MINOR ENSMUSG00000046572 Zfp518b ENSMUST00000057258 ENSMUSP00000061753 TRANSLATION protein_coding - CCDS39078.2 3 1082.0 17.0 0.0 0.1 0.0 0.0 -4,-5 0.9326 1 6.0 PRINCIPAL:1 ENSMUSG00000046572 Zfp518b ENSMUST00000178760 ENSMUSP00000136862 TRANSLATION protein_coding stop - 2 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1006 - -2.0 MINOR ENSMUSG00000046572 Zfp518b ENSMUST00000179555 ENSMUSP00000137381 TRANSLATION protein_coding - CCDS39078.2 2 1082.0 17.0 0.0 0.1 0.0 0.0 -4,-5 0.9326 1 6.0 PRINCIPAL:1 ENSMUSG00000029307 Dmp1 ENSMUST00000066708 ENSMUSP00000068053 TRANSLATION protein_coding - CCDS19484.1 1 503.0 0.0 0.0 0.1 672.9 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045294 Insig1 ENSMUST00000199728 - NO_TRANSLATION retained_intron ENSMUSG00000045294 Insig1 ENSMUST00000059155 ENSMUSP00000061877 TRANSLATION protein_coding - CCDS19142.1 1 259.0 0.0 2.18 4.6 159.2 0.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000029445 Hpd ENSMUST00000155092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029445 Hpd ENSMUST00000156539 - NO_TRANSLATION retained_intron ENSMUSG00000029445 Hpd ENSMUST00000031398 ENSMUSP00000031398 TRANSLATION protein_coding - CCDS39265.1 1 393.0 3.0 10.924 15.3 100.2 0.0 -4,-7 1.0 19 19.0 PRINCIPAL:1 ENSMUSG00000029445 Hpd ENSMUST00000144679 ENSMUSP00000118702 TRANSLATION protein_coding start - 3 96.0 1.0 2.33 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029445 Hpd ENSMUST00000154713 ENSMUSP00000121922 TRANSLATION protein_coding stop - 3 159.0 1.0 4.75 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000029445 Hpd ENSMUST00000124110 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011034 Slc5a1 ENSMUST00000011178 ENSMUSP00000011178 TRANSLATION protein_coding - CCDS19199.1 1 665.0 0.0 11.2 12.5 572.1 0.0 -4,-7 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000041638 Gcn1 ENSMUST00000137523 - NO_TRANSLATION retained_intron ENSMUSG00000041638 Gcn1 ENSMUST00000202584 - NO_TRANSLATION retained_intron ENSMUSG00000041638 Gcn1 ENSMUST00000125299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041638 Gcn1 ENSMUST00000122964 - NO_TRANSLATION retained_intron ENSMUSG00000041638 Gcn1 ENSMUST00000094427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041638 Gcn1 ENSMUST00000139933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041638 Gcn1 ENSMUST00000136041 - NO_TRANSLATION retained_intron ENSMUSG00000041638 Gcn1 ENSMUST00000129424 - NO_TRANSLATION retained_intron ENSMUSG00000041638 Gcn1 ENSMUST00000064454 ENSMUSP00000069432 TRANSLATION protein_coding - CCDS19595.1 1 2671.0 0.0 3.447 20.9 0.0 0.0 -4,-6 1.0 93 10.0 PRINCIPAL:1 ENSMUSG00000041638 Gcn1 ENSMUST00000141472 - NO_TRANSLATION retained_intron ENSMUSG00000036285 Noa1 ENSMUST00000047860 ENSMUSP00000045948 TRANSLATION protein_coding - CCDS19373.1 1 693.0 15.0 1.42 1.5 34.7 0.0 -1,2 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000036285 Noa1 ENSMUST00000139435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036285 Noa1 ENSMUST00000150451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036285 Noa1 ENSMUST00000150722 - NO_TRANSLATION retained_intron ENSMUSG00000029313 Aff1 ENSMUST00000126335 - NO_TRANSLATION retained_intron ENSMUSG00000029313 Aff1 ENSMUST00000153165 ENSMUSP00000119631 TRANSLATION protein_coding stop - 1 870.0 0.0 1.35 0.0 878.1 0.0 -4,-5 0.0658 5 -2.0 MINOR ENSMUSG00000029313 Aff1 ENSMUST00000152145 - NO_TRANSLATION retained_intron ENSMUSG00000029313 Aff1 ENSMUST00000054979 ENSMUSP00000059744 TRANSLATION protein_coding - CCDS39188.1 1 1218.0 0.0 3.85 0.0 1436.0 0.0 -4,-6 1.0 7 6.0 PRINCIPAL:2 ENSMUSG00000029313 Aff1 ENSMUST00000031256 ENSMUSP00000031256 TRANSLATION protein_coding - CCDS39189.1 5 1226.0 0.0 3.85 0.0 1436.0 0.0 -4,-5 0.7114 7 6.0 ALTERNATIVE:2 ENSMUSG00000006262 Mob1b ENSMUST00000155298 - NO_TRANSLATION retained_intron ENSMUSG00000006262 Mob1b ENSMUST00000113229 ENSMUSP00000108855 TRANSLATION protein_coding - - 1 221.0 4.0 4.75 34.9 269.6 0.0 -4,-7 0.8039 - 16.0 ALTERNATIVE:1 ENSMUSG00000006262 Mob1b ENSMUST00000125171 - NO_TRANSLATION retained_intron ENSMUSG00000006262 Mob1b ENSMUST00000006424 ENSMUSP00000006424 TRANSLATION protein_coding - CCDS39139.1 1 216.0 4.0 4.75 34.9 280.9 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000072694 1500011B03Rik ENSMUST00000061251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072694 1500011B03Rik ENSMUST00000234046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072694 1500011B03Rik ENSMUST00000140374 ENSMUSP00000116625 TRANSLATION protein_coding - - 2 72.0 0.0 0.0 0.3 0.0 1.0 0,-5 0.6154 - 0.0 ALTERNATIVE:2 ENSMUSG00000072694 1500011B03Rik ENSMUST00000112160 ENSMUSP00000107786 TRANSLATION protein_coding - - 1 72.0 0.0 0.0 0.3 0.0 1.0 0,-5 0.6154 - 0.0 PRINCIPAL:5 ENSMUSG00000072694 1500011B03Rik ENSMUST00000100850 ENSMUSP00000098411 TRANSLATION protein_coding - CCDS39225.1 1 139.0 0.0 0.0 0.0 0.0 1.0 3,-2 0.3406 - 0.0 ALTERNATIVE:2 ENSMUSG00000091794 Vmn2r18 ENSMUST00000232905 ENSMUSP00000156470 TRANSLATION protein_coding - - - 795.0 5.0 2.378 0.0 377.5 13.0 -1,-5 0.0538 - 11.794 MINOR ENSMUSG00000091794 Vmn2r18 ENSMUST00000233599 ENSMUSP00000156703 TRANSLATION protein_coding - - - 871.0 5.0 2.978 0.0 396.0 13.0 -1,-5 0.6473 - 13.0 PRINCIPAL:2 ENSMUSG00000091794 Vmn2r18 ENSMUST00000240714 ENSMUSP00000159507 TRANSLATION protein_coding - - - 863.0 5.0 2.68 0.0 399.8 13.0 -1,-5 0.2767 - 12.4 ALTERNATIVE:2 ENSMUSG00000091794 Vmn2r18 ENSMUST00000233687 ENSMUSP00000156670 TRANSLATION nonsense_mediated_decay - - - 478.0 5.0 1.278 0.0 121.1 0.0 -1,-5 0.001 - -2.0 MINOR ENSMUSG00000091794 Vmn2r18 ENSMUST00000232853 ENSMUSP00000156972 TRANSLATION nonsense_mediated_decay - - - 182.0 5.0 0.76 0.0 37.9 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000029298 Gbp9 ENSMUST00000031238 ENSMUSP00000031238 TRANSLATION protein_coding - CCDS39191.1 1 619.0 16.0 9.4 0.0 759.9 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000029298 Gbp9 ENSMUST00000199453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029298 Gbp9 ENSMUST00000100961 ENSMUSP00000098521 TRANSLATION protein_coding - CCDS39191.1 1 619.0 16.0 9.4 0.0 759.9 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000029298 Gbp9 ENSMUST00000196820 - NO_TRANSLATION retained_intron ENSMUSG00000053334 Ficd ENSMUST00000065698 ENSMUSP00000071719 TRANSLATION protein_coding - CCDS51620.1 1 458.0 7.0 1.0 13.6 0.0 0.0 0,-3 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000029328 Hnrnpdl ENSMUST00000086900 ENSMUSP00000084114 TRANSLATION nonsense_mediated_decay - CCDS19460.2 5 420.0 0.0 3.299 11.8 113.2 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000029328 Hnrnpdl ENSMUST00000153442 ENSMUSP00000118555 TRANSLATION protein_coding start - 1 323.0 0.0 3.2 0.0 113.2 0.0 -4,-7 0.0255 11 -2.0 MINOR ENSMUSG00000029328 Hnrnpdl ENSMUST00000151323 - NO_TRANSLATION retained_intron ENSMUSG00000029328 Hnrnpdl ENSMUST00000128187 ENSMUSP00000121005 TRANSLATION protein_coding - CCDS19460.2 1 420.0 0.0 3.299 11.8 113.2 0.0 -4,-7 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000029328 Hnrnpdl ENSMUST00000149384 ENSMUSP00000117589 TRANSLATION nonsense_mediated_decay start - 5 100.0 0.0 0.099 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000029328 Hnrnpdl ENSMUST00000141337 - NO_TRANSLATION retained_intron ENSMUSG00000029328 Hnrnpdl ENSMUST00000135424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091204 Exoc1l ENSMUST00000172369 ENSMUSP00000146625 TRANSLATION protein_coding - - 1 172.0 0.0 3.0 13.3 76.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091204 Exoc1l ENSMUST00000191515 ENSMUSP00000147216 TRANSLATION protein_coding - - 5 172.0 0.0 3.0 13.3 76.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029580 Actb ENSMUST00000171419 ENSMUSP00000130611 TRANSLATION protein_coding stop - 1 265.0 22.0 5.08 0.0 329.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029580 Actb ENSMUST00000167386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029580 Actb ENSMUST00000100497 ENSMUSP00000098066 TRANSLATION protein_coding - CCDS19833.1 1 375.0 35.0 7.08 35.8 503.2 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000029580 Actb ENSMUST00000163829 ENSMUSP00000132135 TRANSLATION protein_coding stop - 2 108.0 13.0 3.08 0.0 64.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029580 Actb ENSMUST00000164765 - NO_TRANSLATION retained_intron ENSMUSG00000029580 Actb ENSMUST00000196997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029580 Actb ENSMUST00000167721 ENSMUSP00000127663 TRANSLATION protein_coding - - 5 295.0 35.0 5.08 0.0 340.0 0.0 -4,-5 0.0012 - 7.998 MINOR ENSMUSG00000029580 Actb ENSMUST00000106216 ENSMUSP00000101823 TRANSLATION protein_coding stop - 3 150.0 8.0 3.75 0.0 189.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029580 Actb ENSMUST00000165629 - NO_TRANSLATION retained_intron ENSMUSG00000029321 Slc10a6 ENSMUST00000031263 ENSMUSP00000031263 TRANSLATION protein_coding - CCDS19477.1 1 373.0 0.0 4.15 6.3 135.4 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050553 Gk2 ENSMUST00000059657 ENSMUSP00000052226 TRANSLATION protein_coding - CCDS19454.1 - 554.0 11.0 1.0 16.7 486.2 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000095718 Pramel40 ENSMUST00000086050 ENSMUSP00000083215 TRANSLATION protein_coding - - 5 481.0 2.0 2.2 0.4 0.0 0.0 -4,-6 0.6423 - 8.0 PRINCIPAL:1 ENSMUSG00000029104 Htt ENSMUST00000080036 ENSMUSP00000078945 TRANSLATION protein_coding - CCDS19220.1 1 3120.0 0.0 28.33 0.7 74.2 0.0 -4,-5 1.0 66 12.0 PRINCIPAL:1 ENSMUSG00000029104 Htt ENSMUST00000156490 - NO_TRANSLATION retained_intron ENSMUSG00000029104 Htt ENSMUST00000124272 - NO_TRANSLATION retained_intron ENSMUSG00000029104 Htt ENSMUST00000123755 - NO_TRANSLATION retained_intron ENSMUSG00000029104 Htt ENSMUST00000135039 - NO_TRANSLATION retained_intron ENSMUSG00000029104 Htt ENSMUST00000201613 - NO_TRANSLATION retained_intron ENSMUSG00000029104 Htt ENSMUST00000202059 - NO_TRANSLATION retained_intron ENSMUSG00000029104 Htt ENSMUST00000148953 - NO_TRANSLATION retained_intron ENSMUSG00000040731 Eif4h ENSMUST00000202289 - NO_TRANSLATION retained_intron ENSMUSG00000040731 Eif4h ENSMUST00000036125 ENSMUSP00000048833 TRANSLATION protein_coding - CCDS84968.1 1 228.0 0.0 2.925 8.4 48.2 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000040731 Eif4h ENSMUST00000200874 - NO_TRANSLATION retained_intron ENSMUSG00000040731 Eif4h ENSMUST00000201263 - NO_TRANSLATION retained_intron ENSMUSG00000040731 Eif4h ENSMUST00000202622 ENSMUSP00000143910 TRANSLATION protein_coding - CCDS19723.1 1 248.0 0.0 2.3625 8.2 48.2 0.0 -4,-5 0.8766 8 13.767 MINOR ENSMUSG00000029169 Dhx15 ENSMUST00000195922 ENSMUSP00000143658 TRANSLATION protein_coding stop - 3 186.0 0.0 3.075 0.0 0.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000029169 Dhx15 ENSMUST00000198378 - NO_TRANSLATION retained_intron ENSMUSG00000029169 Dhx15 ENSMUST00000199321 ENSMUSP00000143069 TRANSLATION protein_coding - CCDS80280.1 1 703.0 11.0 11.625 0.0 160.8 0.0 -4,-5 0.0163 26 9.264 MINOR ENSMUSG00000029169 Dhx15 ENSMUST00000200186 ENSMUSP00000143381 TRANSLATION nonsense_mediated_decay - - 1 608.0 11.0 9.625 1.0 143.2 0.0 -4,-5 0.0119 23 -2.0 MINOR ENSMUSG00000029169 Dhx15 ENSMUST00000196230 - NO_TRANSLATION retained_intron ENSMUSG00000029169 Dhx15 ENSMUST00000031061 ENSMUSP00000031061 TRANSLATION protein_coding - CCDS39085.1 1 795.0 11.0 13.625 12.5 239.7 0.0 -4,-5 1.0 30 21.0 PRINCIPAL:1 ENSMUSG00000029169 Dhx15 ENSMUST00000199343 - NO_TRANSLATION retained_intron ENSMUSG00000107011 Gm42906 ENSMUST00000202365 ENSMUSP00000143819 TRANSLATION protein_coding,RT stop - 5 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000038095 Sbno1 ENSMUST00000197974 - NO_TRANSLATION retained_intron ENSMUSG00000038095 Sbno1 ENSMUST00000197228 - NO_TRANSLATION retained_intron ENSMUSG00000038095 Sbno1 ENSMUST00000196644 ENSMUSP00000142827 TRANSLATION protein_coding stop - 1 785.0 10.0 0.0 0.0 473.2 0.0 -4,-6 0.0134 14 -2.0 MINOR ENSMUSG00000038095 Sbno1 ENSMUST00000196711 ENSMUSP00000142980 TRANSLATION protein_coding stop - 5 211.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 5 -2.0 MINOR ENSMUSG00000038095 Sbno1 ENSMUST00000168651 ENSMUSP00000130860 TRANSLATION protein_coding stop - 1 1390.0 10.0 0.0 12.3 883.7 0.0 -4,-6 0.8692 23 -2.0 MINOR ENSMUSG00000038095 Sbno1 ENSMUST00000199004 ENSMUSP00000143314 TRANSLATION nonsense_mediated_decay - - 2 263.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 6 -2.0 MINOR ENSMUSG00000038095 Sbno1 ENSMUST00000200474 ENSMUSP00000143516 TRANSLATION protein_coding stop - 1 755.0 10.0 0.0 0.0 473.2 0.0 -4,-6 0.0134 13 -2.0 MINOR ENSMUSG00000038095 Sbno1 ENSMUST00000197777 ENSMUSP00000143572 TRANSLATION protein_coding stop - 3 92.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038095 Sbno1 ENSMUST00000200674 ENSMUSP00000143440 TRANSLATION nonsense_mediated_decay start - 5 242.0 10.0 0.0 0.0 337.3 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000038095 Sbno1 ENSMUST00000199245 - NO_TRANSLATION retained_intron ENSMUSG00000038095 Sbno1 ENSMUST00000196329 ENSMUSP00000143084 TRANSLATION protein_coding stop - 1 663.0 10.0 0.0 0.0 473.2 0.0 -4,-6 0.0098 13 -2.0 MINOR ENSMUSG00000038095 Sbno1 ENSMUST00000197723 - NO_TRANSLATION retained_intron ENSMUSG00000038095 Sbno1 ENSMUST00000199808 ENSMUSP00000142481 TRANSLATION protein_coding - CCDS39280.1 1 1391.0 10.0 0.0 12.3 883.7 0.0 -4,-6 1.0 23 15.0 PRINCIPAL:1 ENSMUSG00000038095 Sbno1 ENSMUST00000198420 ENSMUSP00000142416 TRANSLATION protein_coding stop - 2 133.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000038095 Sbno1 ENSMUST00000196647 - NO_TRANSLATION retained_intron ENSMUSG00000038095 Sbno1 ENSMUST00000196842 - NO_TRANSLATION retained_intron ENSMUSG00000038095 Sbno1 ENSMUST00000198285 - NO_TRANSLATION retained_intron ENSMUSG00000038095 Sbno1 ENSMUST00000065263 ENSMUSP00000066808 TRANSLATION protein_coding - CCDS39280.1 5 1391.0 10.0 0.0 12.3 883.7 0.0 -4,-6 1.0 23 15.0 PRINCIPAL:1 ENSMUSG00000016833 Mrps18c ENSMUST00000112898 ENSMUSP00000108519 TRANSLATION protein_coding - - 3 88.0 0.0 1.375 0.1 0.0 0.0 -3,-1 0.0007 - 1.68 MINOR ENSMUSG00000016833 Mrps18c ENSMUST00000143477 - NO_TRANSLATION retained_intron ENSMUSG00000016833 Mrps18c ENSMUST00000140296 - NO_TRANSLATION retained_intron ENSMUSG00000016833 Mrps18c ENSMUST00000112901 ENSMUSP00000108522 TRANSLATION protein_coding - - 1 128.0 0.0 2.917 0.0 77.7 0.0 -3,-1 0.0093 1 10.524 MINOR ENSMUSG00000016833 Mrps18c ENSMUST00000016977 ENSMUSP00000016977 TRANSLATION protein_coding - CCDS19468.1 1 143.0 0.0 3.535 13.5 80.9 0.0 -3,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000016833 Mrps18c ENSMUST00000198453 ENSMUSP00000143166 TRANSLATION nonsense_mediated_decay - - 3 42.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000056493 Foxk1 ENSMUST00000072837 ENSMUSP00000072616 TRANSLATION protein_coding - CCDS19826.1 1 719.0 0.0 2.04 0.4 181.3 0.0 -3,-4 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000056493 Foxk1 ENSMUST00000198422 ENSMUSP00000143450 TRANSLATION protein_coding - - 3 181.0 0.0 0.0 0.0 37.2 0.0 -3,-4 0.0 4 0.0 MINOR ENSMUSG00000067274 Rplp0 ENSMUST00000086519 ENSMUSP00000083705 TRANSLATION protein_coding - CCDS19594.1 1 317.0 0.0 5.78 36.9 155.5 0.0 -4,-6 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000067274 Rplp0 ENSMUST00000156359 ENSMUSP00000138289 TRANSLATION protein_coding stop - 5 221.0 0.0 4.33 0.0 47.2 0.0 -4,0 0.0 10 -2.0 MINOR ENSMUSG00000067274 Rplp0 ENSMUST00000155584 - NO_TRANSLATION retained_intron ENSMUSG00000067274 Rplp0 ENSMUST00000152976 ENSMUSP00000114332 TRANSLATION protein_coding stop - 2 145.0 0.0 3.05 0.0 77.5 0.0 -4,-6 0.0 10 -2.0 MINOR ENSMUSG00000107392 Pramel35 ENSMUST00000249096 ENSMUSP00000159579 TRANSLATION protein_coding - - - 481.0 2.0 2.2 0.4 0.0 0.0 -4,-2 0.6805 - 8.0 PRINCIPAL:1 ENSMUSG00000107392 Pramel35 ENSMUST00000201555 ENSMUSP00000143931 TRANSLATION protein_coding - - 5 481.0 2.0 2.2 0.4 0.0 0.0 -4,-2 0.6805 - 8.0 PRINCIPAL:1 ENSMUSG00000013629 Cad ENSMUST00000201844 - NO_TRANSLATION retained_intron ENSMUSG00000013629 Cad ENSMUST00000201838 ENSMUSP00000144127 TRANSLATION protein_coding - - 1 971.0 39.0 13.95 0.0 739.2 0.0 -4,-5 0.0349 26 1.998 MINOR ENSMUSG00000013629 Cad ENSMUST00000202227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013629 Cad ENSMUST00000202967 - NO_TRANSLATION retained_intron ENSMUSG00000013629 Cad ENSMUST00000201870 - NO_TRANSLATION retained_intron ENSMUSG00000013629 Cad ENSMUST00000202391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013629 Cad ENSMUST00000013773 ENSMUSP00000013773 TRANSLATION protein_coding - CCDS19171.1 1 2225.0 45.0 35.913 9.5 1206.0 0.0 -4,-5 1.0 62 21.0 PRINCIPAL:1 ENSMUSG00000013629 Cad ENSMUST00000201182 ENSMUSP00000144684 TRANSLATION protein_coding - CCDS80246.1 1 2154.0 45.0 34.583 0.0 1085.8 0.0 -4,-5 0.3403 57 9.342 MINOR ENSMUSG00000013629 Cad ENSMUST00000200917 - NO_TRANSLATION retained_intron ENSMUSG00000013629 Cad ENSMUST00000202795 ENSMUSP00000144009 TRANSLATION protein_coding - CCDS80245.1 1 2164.0 45.0 34.913 0.0 1084.5 0.0 -4,-5 0.355 57 10.002 MINOR ENSMUSG00000013629 Cad ENSMUST00000202827 - NO_TRANSLATION retained_intron ENSMUSG00000013629 Cad ENSMUST00000200953 ENSMUSP00000144307 TRANSLATION protein_coding - - 5 2162.0 41.0 34.913 1.0 1086.5 0.0 -4,-5 0.2935 62 7.338 MINOR ENSMUSG00000013629 Cad ENSMUST00000202973 ENSMUSP00000144679 TRANSLATION protein_coding start/stop - 3 194.0 0.0 2.91 0.0 0.0 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000013629 Cad ENSMUST00000201256 - NO_TRANSLATION retained_intron ENSMUSG00000090981 Or10ah1-ps1 ENSMUST00000213631 ENSMUSP00000153793 TRANSLATION protein_coding - - 5 344.0 0.0 1.0 0.0 136.0 7.0 -4,-7 0.8185 - 12.0 PRINCIPAL:1 ENSMUSG00000090981 Or10ah1-ps1 ENSMUST00000215102 ENSMUSP00000154150 TRANSLATION protein_coding - - 5 344.0 0.0 1.0 0.0 136.0 7.0 -4,-7 0.8185 - 12.0 PRINCIPAL:1 ENSMUSG00000090981 Or10ah1-ps1 ENSMUST00000164536 ENSMUSP00000154102 TRANSLATION protein_coding - - 5 344.0 0.0 1.0 0.0 136.0 7.0 -4,-7 0.8185 - 12.0 PRINCIPAL:1 ENSMUSG00000091059 Vmn2r14 ENSMUST00000170341 ENSMUSP00000128015 TRANSLATION protein_coding - CCDS51600.1 5 848.0 4.0 1.992 0.1 379.4 7.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091059 Vmn2r14 ENSMUST00000233137 ENSMUSP00000156478 TRANSLATION nonsense_mediated_decay - CCDS51600.1 - 848.0 4.0 1.992 0.1 379.4 7.0 2,-3 1.0 - -2.0 MINOR ENSMUSG00000029014 Dnajc2 ENSMUST00000030771 ENSMUSP00000030771 TRANSLATION protein_coding - CCDS19107.1 1 621.0 0.0 8.0775 30.2 213.0 0.0 -4,-6 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000029014 Dnajc2 ENSMUST00000115195 ENSMUSP00000110849 TRANSLATION protein_coding - - 5 547.0 0.0 7.9125 12.2 213.0 0.0 -4,-5 0.372 15 13.206 MINOR ENSMUSG00000029014 Dnajc2 ENSMUST00000115193 ENSMUSP00000110847 TRANSLATION protein_coding - - 1 619.0 0.0 7.3275 1.0 212.1 0.0 -4,-6 0.1778 15 10.446 MINOR ENSMUSG00000029014 Dnajc2 ENSMUST00000145955 - NO_TRANSLATION retained_intron ENSMUSG00000029014 Dnajc2 ENSMUST00000132962 - NO_TRANSLATION retained_intron ENSMUSG00000029014 Dnajc2 ENSMUST00000115192 ENSMUSP00000110846 TRANSLATION protein_coding - - 2 191.0 0.0 1.3775 0.0 57.8 0.0 -4,-6 0.0 7 0.0 MINOR ENSMUSG00000029014 Dnajc2 ENSMUST00000147987 - NO_TRANSLATION retained_intron ENSMUSG00000029634 Rnf6 ENSMUST00000161574 ENSMUSP00000123730 TRANSLATION protein_coding stop - 5 188.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000029634 Rnf6 ENSMUST00000159074 ENSMUSP00000123926 TRANSLATION protein_coding stop - 3 129.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000029634 Rnf6 ENSMUST00000067837 ENSMUSP00000067559 TRANSLATION protein_coding - CCDS19868.1 1 667.0 8.0 0.0 0.0 42.6 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000029634 Rnf6 ENSMUST00000161859 ENSMUSP00000124293 TRANSLATION protein_coding - CCDS19868.1 1 667.0 8.0 0.0 0.0 42.6 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000029634 Rnf6 ENSMUST00000161725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029634 Rnf6 ENSMUST00000161331 ENSMUSP00000125611 TRANSLATION protein_coding stop - 2 167.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029634 Rnf6 ENSMUST00000162219 ENSMUSP00000123708 TRANSLATION protein_coding start/stop - 3 271.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0022 1 -2.0 MINOR ENSMUSG00000029634 Rnf6 ENSMUST00000169407 ENSMUSP00000128774 TRANSLATION protein_coding - CCDS19868.1 2 667.0 8.0 0.0 0.0 42.6 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000025745 Hadha ENSMUST00000196156 - NO_TRANSLATION retained_intron ENSMUSG00000025745 Hadha ENSMUST00000026843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025745 Hadha ENSMUST00000126081 - NO_TRANSLATION retained_intron ENSMUSG00000025745 Hadha ENSMUST00000196946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025745 Hadha ENSMUST00000130358 - NO_TRANSLATION retained_intron ENSMUSG00000025745 Hadha ENSMUST00000132486 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025745 Hadha ENSMUST00000197491 - NO_TRANSLATION retained_intron ENSMUSG00000025745 Hadha ENSMUST00000156859 ENSMUSP00000120976 TRANSLATION protein_coding - CCDS19155.1 1 763.0 38.0 16.95 27.8 433.3 0.0 -4,0 1.0 37 22.0 PRINCIPAL:1 ENSMUSG00000025745 Hadha ENSMUST00000199559 - NO_TRANSLATION retained_intron ENSMUSG00000036323 Srp72 ENSMUST00000144741 - NO_TRANSLATION retained_intron ENSMUSG00000036323 Srp72 ENSMUST00000150661 - NO_TRANSLATION retained_intron ENSMUSG00000036323 Srp72 ENSMUST00000120550 ENSMUSP00000113312 TRANSLATION protein_coding - - 5 610.0 0.0 13.08 0.0 94.7 0.0 -4,-6 0.0295 27 9.0 MINOR ENSMUSG00000036323 Srp72 ENSMUST00000146167 - NO_TRANSLATION retained_intron ENSMUSG00000036323 Srp72 ENSMUST00000132860 - NO_TRANSLATION retained_intron ENSMUSG00000036323 Srp72 ENSMUST00000141873 - NO_TRANSLATION retained_intron ENSMUSG00000036323 Srp72 ENSMUST00000101087 ENSMUSP00000098648 TRANSLATION protein_coding - CCDS39119.1 2 671.0 0.0 14.58 0.1 94.7 0.0 -4,-6 1.0 29 12.0 PRINCIPAL:1 ENSMUSG00000036323 Srp72 ENSMUST00000148423 - NO_TRANSLATION retained_intron ENSMUSG00000036323 Srp72 ENSMUST00000125732 - NO_TRANSLATION retained_intron ENSMUSG00000039191 Rbpj ENSMUST00000037618 ENSMUSP00000040694 TRANSLATION protein_coding - CCDS19292.1 1 526.0 7.0 9.83 0.0 425.3 0.0 -4,-2 0.1611 11 18.0 MINOR ENSMUSG00000039191 Rbpj ENSMUST00000201721 - NO_TRANSLATION retained_intron ENSMUSG00000039191 Rbpj ENSMUST00000200856 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039191 Rbpj ENSMUST00000202476 - NO_TRANSLATION retained_intron ENSMUSG00000039191 Rbpj ENSMUST00000087360 ENSMUSP00000084618 TRANSLATION protein_coding - CCDS51503.1 5 485.0 7.0 9.83 2.0 425.3 0.0 -4,-2 0.4936 11 18.168 MINOR ENSMUSG00000039191 Rbpj ENSMUST00000201991 ENSMUSP00000144617 TRANSLATION protein_coding stop - 5 180.0 7.0 3.83 0.0 174.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039191 Rbpj ENSMUST00000201912 ENSMUSP00000143866 TRANSLATION protein_coding - CCDS80283.1 1 507.0 7.0 9.83 0.0 425.3 0.0 -1,0 0.2181 11 18.0 MINOR ENSMUSG00000039191 Rbpj ENSMUST00000201883 ENSMUSP00000143846 TRANSLATION protein_coding - - 1 465.0 7.0 9.33 16.1 425.3 0.0 -4,-6 0.7286 11 19.558 MINOR ENSMUSG00000039191 Rbpj ENSMUST00000113865 ENSMUSP00000109496 TRANSLATION protein_coding - CCDS51504.1 1 487.0 7.0 9.83 24.6 425.3 0.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000039191 Rbpj ENSMUST00000201701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039191 Rbpj ENSMUST00000202092 - NO_TRANSLATION retained_intron ENSMUSG00000039191 Rbpj ENSMUST00000201928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073116 Gm10471 ENSMUST00000094946 ENSMUSP00000092553 TRANSLATION protein_coding - CCDS80236.1 5 252.0 0.0 2.05 0.0 85.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094195 Pramel44 ENSMUST00000201552 ENSMUSP00000144354 TRANSLATION protein_coding - - 5 481.0 2.0 2.1 0.4 0.0 0.0 -4,-7 0.649 - 8.0 PRINCIPAL:1 ENSMUSG00000029387 Gtf2h3 ENSMUST00000126466 - NO_TRANSLATION retained_intron ENSMUSG00000029387 Gtf2h3 ENSMUST00000143810 - NO_TRANSLATION retained_intron ENSMUSG00000029387 Gtf2h3 ENSMUST00000142746 - NO_TRANSLATION retained_intron ENSMUSG00000029387 Gtf2h3 ENSMUST00000200670 - NO_TRANSLATION retained_intron ENSMUSG00000029387 Gtf2h3 ENSMUST00000031333 ENSMUSP00000031333 TRANSLATION protein_coding - CCDS19680.1 1 309.0 4.0 8.41 10.3 349.4 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000029387 Gtf2h3 ENSMUST00000153436 - NO_TRANSLATION retained_intron ENSMUSG00000029281 Smr2 ENSMUST00000196477 ENSMUSP00000142688 TRANSLATION protein_coding - CCDS80321.1 1 143.0 0.0 0.0 0.0 106.6 0.0 1,-2 0.5263 - 2.0 ALTERNATIVE:2 ENSMUSG00000029281 Smr2 ENSMUST00000199635 ENSMUSP00000142444 TRANSLATION protein_coding - - 1 150.0 0.0 0.0 0.0 120.3 0.0 2,-3 0.1404 - 0.0 MINOR ENSMUSG00000029281 Smr2 ENSMUST00000196070 ENSMUSP00000143443 TRANSLATION protein_coding - CCDS80321.1 1 143.0 0.0 0.0 0.0 106.6 0.0 1,-2 0.5263 - 2.0 ALTERNATIVE:2 ENSMUSG00000029281 Smr2 ENSMUST00000087043 ENSMUSP00000084271 TRANSLATION protein_coding - CCDS39137.1 1 143.0 0.0 0.0 0.0 108.8 0.0 2,-3 0.5547 - 2.0 PRINCIPAL:4 ENSMUSG00000025337 Sbds ENSMUST00000139211 ENSMUSP00000117348 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 1.0 0.0 33.8 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000025337 Sbds ENSMUST00000201598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025337 Sbds ENSMUST00000026387 ENSMUSP00000026387 TRANSLATION protein_coding - CCDS19710.1 1 250.0 0.0 5.0 30.1 247.1 0.0 -4,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000025337 Sbds ENSMUST00000125625 ENSMUSP00000115494 TRANSLATION protein_coding start - 2 173.0 0.0 3.0 0.0 178.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000025337 Sbds ENSMUST00000200815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029402 Snrnp35 ENSMUST00000031349 ENSMUSP00000031349 TRANSLATION protein_coding - CCDS19677.1 1 244.0 3.0 1.8 9.1 61.0 0.0 -4,-5 1.0 2 17.94 PRINCIPAL:1 ENSMUSG00000029402 Snrnp35 ENSMUST00000136567 ENSMUSP00000121120 TRANSLATION protein_coding stop - 3 121.0 3.0 1.0 0.0 61.6 0.0 -4,-5 0.0106 2 -2.0 MINOR ENSMUSG00000029402 Snrnp35 ENSMUST00000111453 ENSMUSP00000107080 TRANSLATION protein_coding - CCDS19677.1 2 244.0 3.0 1.8 9.1 61.0 0.0 -4,-5 1.0 2 17.94 PRINCIPAL:1 ENSMUSG00000062234 Gak ENSMUST00000046603 ENSMUSP00000036705 TRANSLATION protein_coding - CCDS19513.1 1 1305.0 19.0 19.88 1.1 291.9 0.0 -4,-7 1.0 26 19.0 PRINCIPAL:1 ENSMUSG00000062234 Gak ENSMUST00000199048 ENSMUSP00000142931 TRANSLATION nonsense_mediated_decay - - 1 90.0 7.0 1.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000062234 Gak ENSMUST00000196010 - NO_TRANSLATION retained_intron ENSMUSG00000062234 Gak ENSMUST00000199662 ENSMUSP00000143646 TRANSLATION nonsense_mediated_decay - - 5 51.0 1.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000062234 Gak ENSMUST00000137872 - NO_TRANSLATION retained_intron ENSMUSG00000062234 Gak ENSMUST00000199010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062234 Gak ENSMUST00000133745 - NO_TRANSLATION retained_intron ENSMUSG00000062234 Gak ENSMUST00000200204 ENSMUSP00000143359 TRANSLATION protein_coding start/stop - 1 129.0 0.0 2.63 0.0 46.9 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000062234 Gak ENSMUST00000139303 ENSMUSP00000116862 TRANSLATION nonsense_mediated_decay start - 5 187.0 0.0 3.68 0.0 82.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000062234 Gak ENSMUST00000156110 ENSMUSP00000115184 TRANSLATION protein_coding start - 1 608.0 0.0 4.73 0.0 71.0 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000062234 Gak ENSMUST00000145935 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062234 Gak ENSMUST00000135225 ENSMUSP00000118008 TRANSLATION nonsense_mediated_decay - - 1 128.0 13.0 3.5 0.0 35.4 0.0 -4,-7 0.0063 3 -2.0 MINOR ENSMUSG00000062234 Gak ENSMUST00000145467 ENSMUSP00000118713 TRANSLATION nonsense_mediated_decay - - 2 128.0 13.0 3.5 0.0 35.4 0.0 -4,-7 0.0063 - -2.0 MINOR ENSMUSG00000070858 Gm1673 ENSMUST00000114382 ENSMUSP00000110024 TRANSLATION protein_coding - CCDS80261.1 2 90.0 0.0 1.5 4.3 136.0 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000070858 Gm1673 ENSMUST00000114383 ENSMUSP00000110025 TRANSLATION protein_coding - CCDS80261.1 1 90.0 0.0 1.5 4.3 136.0 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000070858 Gm1673 ENSMUST00000142510 ENSMUSP00000119566 TRANSLATION nonsense_mediated_decay start - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0237 - -2.0 MINOR ENSMUSG00000070858 Gm1673 ENSMUST00000206020 - NO_TRANSLATION retained_intron ENSMUSG00000070858 Gm1673 ENSMUST00000094869 ENSMUSP00000092467 TRANSLATION protein_coding - CCDS80261.1 1 90.0 0.0 1.5 4.3 136.0 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000018143 Mafk ENSMUST00000110836 ENSMUSP00000106460 TRANSLATION protein_coding - CCDS19814.1 5 156.0 0.0 1.0 34.9 117.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000018143 Mafk ENSMUST00000151577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018143 Mafk ENSMUST00000018287 ENSMUSP00000018287 TRANSLATION protein_coding - CCDS19814.1 1 156.0 0.0 1.0 34.9 117.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000040254 Sema3d ENSMUST00000197927 ENSMUSP00000142453 TRANSLATION protein_coding - - 1 660.0 0.0 10.9 0.0 537.9 1.0 -4,-7 0.0616 2 12.0 MINOR ENSMUSG00000040254 Sema3d ENSMUST00000196618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040254 Sema3d ENSMUST00000030868 ENSMUSP00000030868 TRANSLATION protein_coding - CCDS39013.1 1 777.0 0.0 10.6 9.6 537.9 1.0 -4,-7 1.0 2 14.4 PRINCIPAL:1 ENSMUSG00000040254 Sema3d ENSMUST00000195923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040254 Sema3d ENSMUST00000196093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037108 Zcwpw1 ENSMUST00000200505 - NO_TRANSLATION retained_intron ENSMUSG00000037108 Zcwpw1 ENSMUST00000035852 ENSMUSP00000048730 TRANSLATION protein_coding - CCDS19779.1 1 630.0 4.0 2.91 0.0 119.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037108 Zcwpw1 ENSMUST00000128946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037108 Zcwpw1 ENSMUST00000141642 ENSMUSP00000120909 TRANSLATION protein_coding start/stop - 3 269.0 0.0 1.61 0.0 54.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037108 Zcwpw1 ENSMUST00000127541 - NO_TRANSLATION retained_intron ENSMUSG00000048578 Mlec ENSMUST00000112121 ENSMUSP00000107749 TRANSLATION protein_coding - CCDS19581.1 1 291.0 5.0 4.35 2.8 153.3 0.0 2,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000048578 Mlec ENSMUST00000124678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061937 Csn1s2a ENSMUST00000200210 - NO_TRANSLATION retained_intron ENSMUSG00000061937 Csn1s2a ENSMUST00000196585 ENSMUSP00000143515 TRANSLATION protein_coding - CCDS84900.1 3 169.0 0.0 0.0 0.3 0.0 0.0 3,-2 0.3554 - 0.0 ALTERNATIVE:2 ENSMUSG00000061937 Csn1s2a ENSMUST00000076379 ENSMUSP00000075716 TRANSLATION protein_coding - CCDS39132.1 1 184.0 0.0 0.0 0.4 0.0 0.0 3,-2 0.9519 - 0.0 PRINCIPAL:2 ENSMUSG00000061937 Csn1s2a ENSMUST00000196749 ENSMUSP00000143715 TRANSLATION protein_coding - CCDS80318.1 1 183.0 0.0 0.0 0.4 0.0 0.0 3,-2 0.6369 - 0.0 ALTERNATIVE:2 ENSMUSG00000061937 Csn1s2a ENSMUST00000197019 - NO_TRANSLATION retained_intron ENSMUSG00000061937 Csn1s2a ENSMUST00000199200 - NO_TRANSLATION retained_intron ENSMUSG00000061937 Csn1s2a ENSMUST00000200200 - NO_TRANSLATION retained_intron ENSMUSG00000061937 Csn1s2a ENSMUST00000200350 - NO_TRANSLATION retained_intron ENSMUSG00000061937 Csn1s2a ENSMUST00000200322 ENSMUSP00000142901 TRANSLATION protein_coding - CCDS84901.1 2 176.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.4542 - 0.0 ALTERNATIVE:2 ENSMUSG00000061937 Csn1s2a ENSMUST00000197544 - NO_TRANSLATION retained_intron ENSMUSG00000029015 Slc26a5 ENSMUST00000115176 ENSMUSP00000110830 TRANSLATION protein_coding - CCDS71547.1 1 707.0 0.0 9.6 1.8 363.0 14.0 -4,-5 0.1498 - 5.864 MINOR ENSMUSG00000029015 Slc26a5 ENSMUST00000030878 ENSMUSP00000030878 TRANSLATION protein_coding - CCDS19109.1 1 744.0 0.0 10.4 5.5 444.5 16.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029015 Slc26a5 ENSMUST00000150012 - NO_TRANSLATION retained_intron ENSMUSG00000029015 Slc26a5 ENSMUST00000142888 ENSMUSP00000118263 TRANSLATION nonsense_mediated_decay - - 5 447.0 0.0 6.0 0.0 290.9 16.0 -4,-5 0.0046 - -2.0 MINOR ENSMUSG00000029015 Slc26a5 ENSMUST00000127975 ENSMUSP00000118029 TRANSLATION protein_coding stop - 5 712.0 0.0 9.6 1.7 399.0 16.0 -4,-5 0.1161 - -2.0 MINOR ENSMUSG00000075569 Rsph10b ENSMUST00000169758 ENSMUSP00000127770 TRANSLATION protein_coding stop - 5 234.0 0.0 1.95 0.0 85.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000075569 Rsph10b ENSMUST00000164604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075569 Rsph10b ENSMUST00000212711 ENSMUSP00000148444 TRANSLATION protein_coding start - 5 453.0 3.0 0.265 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000075569 Rsph10b ENSMUST00000166847 ENSMUSP00000132687 TRANSLATION protein_coding - - 5 876.0 3.0 4.315 0.0 180.1 0.0 -4,-5 0.8189 2 15.0 PRINCIPAL:1 ENSMUSG00000075569 Rsph10b ENSMUST00000031618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029136 Rbks ENSMUST00000202036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029136 Rbks ENSMUST00000201744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029136 Rbks ENSMUST00000031018 ENSMUSP00000031018 TRANSLATION protein_coding - CCDS19187.1 1 323.0 25.0 7.5 12.2 216.1 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000095040 1700001J03Rik ENSMUST00000188052 - NO_TRANSLATION retained_intron ENSMUSG00000095040 1700001J03Rik ENSMUST00000073721 ENSMUSP00000073399 TRANSLATION protein_coding - CCDS51699.1 1 219.0 0.0 2.5 0.0 31.3 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000099863 1700031L13Rik ENSMUST00000188072 ENSMUSP00000158901 TRANSLATION protein_coding - - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.5757 - 0.0 PRINCIPAL:1 ENSMUSG00000099863 1700031L13Rik ENSMUST00000185410 ENSMUSP00000159136 TRANSLATION protein_coding - - 1 52.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.5757 - 0.0 PRINCIPAL:1 ENSMUSG00000099863 1700031L13Rik ENSMUST00000185607 ENSMUSP00000159020 TRANSLATION protein_coding - - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.5757 - 0.0 PRINCIPAL:1 ENSMUSG00000099863 1700031L13Rik ENSMUST00000186079 ENSMUSP00000158972 TRANSLATION protein_coding - - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.5757 - 0.0 PRINCIPAL:1 ENSMUSG00000029601 Iqcd ENSMUST00000069259 ENSMUSP00000069167 TRANSLATION protein_coding - - 1 425.0 0.0 3.15 0.0 22.3 0.0 -4,-6 0.0145 1 10.002 MINOR ENSMUSG00000029601 Iqcd ENSMUST00000094391 ENSMUSP00000091955 TRANSLATION protein_coding - CCDS19621.1 1 458.0 0.0 4.15 0.0 22.3 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000106247 Gm43720 ENSMUST00000159067 ENSMUSP00000125178 TRANSLATION nonsense_mediated_decay,RT - - 5 267.0 0.0 3.15 0.0 290.9 0.0 1,-2 0.8485 - -2.0 PRINCIPAL:1 ENSMUSG00000091635 Vmn2r13 ENSMUST00000053253 ENSMUSP00000052977 TRANSLATION protein_coding - CCDS51599.1 5 831.0 4.0 2.48 0.3 368.6 0.0 2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029376 Mthfd2l ENSMUST00000071652 ENSMUSP00000071578 TRANSLATION protein_coding - CCDS39145.1 5 338.0 22.0 7.0 2.1 336.3 0.0 -4,0 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000029376 Mthfd2l ENSMUST00000202852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029376 Mthfd2l ENSMUST00000202781 ENSMUSP00000144302 TRANSLATION protein_coding - - 1 62.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0005 - 0.0 MINOR ENSMUSG00000029376 Mthfd2l ENSMUST00000201851 - NO_TRANSLATION retained_intron ENSMUSG00000038072 Galnt11 ENSMUST00000114952 ENSMUSP00000110602 TRANSLATION protein_coding - CCDS19133.1 1 608.0 21.0 8.405 20.3 186.7 1.0 -3,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000038072 Galnt11 ENSMUST00000045737 ENSMUSP00000036240 TRANSLATION protein_coding - CCDS19133.1 1 608.0 21.0 8.405 20.3 186.7 1.0 -3,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000038072 Galnt11 ENSMUST00000196213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038072 Galnt11 ENSMUST00000144971 ENSMUSP00000115282 TRANSLATION protein_coding stop - 5 46.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038072 Galnt11 ENSMUST00000114950 ENSMUSP00000110600 TRANSLATION protein_coding - CCDS19133.1 1 608.0 21.0 8.405 20.3 186.7 1.0 -3,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000029304 Spp1 ENSMUST00000086833 ENSMUSP00000084043 TRANSLATION protein_coding - CCDS57367.1 5 295.0 0.0 0.0 0.0 402.4 0.0 3,-2 0.7399 3 2.0 ALTERNATIVE:2 ENSMUSG00000029304 Spp1 ENSMUST00000112747 ENSMUSP00000108367 TRANSLATION protein_coding - CCDS19486.1 1 294.0 0.0 0.0 0.0 394.5 0.0 3,-2 0.8587 3 2.0 PRINCIPAL:4 ENSMUSG00000029304 Spp1 ENSMUST00000132457 ENSMUSP00000123163 TRANSLATION protein_coding stop - 3 48.0 0.0 0.0 0.0 34.0 0.0 3,-2 0.0045 - -2.0 MINOR ENSMUSG00000029304 Spp1 ENSMUST00000112748 ENSMUSP00000108368 TRANSLATION protein_coding - CCDS19486.1 1 294.0 0.0 0.0 0.0 394.5 0.0 3,-2 0.8587 3 2.0 PRINCIPAL:4 ENSMUSG00000029304 Spp1 ENSMUST00000112746 ENSMUSP00000108366 TRANSLATION protein_coding stop - 5 164.0 0.0 0.0 0.0 226.5 0.0 3,-2 0.0034 3 -2.0 MINOR ENSMUSG00000029304 Spp1 ENSMUST00000145084 ENSMUSP00000117338 TRANSLATION protein_coding stop - 5 152.0 0.0 0.0 0.0 208.1 0.0 3,-2 0.0034 2 -2.0 MINOR ENSMUSG00000029304 Spp1 ENSMUST00000031243 ENSMUSP00000031243 TRANSLATION protein_coding - CCDS19486.1 1 294.0 0.0 0.0 0.0 394.5 0.0 3,-2 0.8587 3 2.0 PRINCIPAL:4 ENSMUSG00000091897 Gm17019 ENSMUST00000167908 ENSMUSP00000127520 TRANSLATION protein_coding - CCDS51419.1 1 255.0 0.0 2.25 0.0 99.4 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000105835 Gm43552 ENSMUST00000196121 ENSMUSP00000143665 TRANSLATION protein_coding,RT - - 3 29.0 0.0 0.0 0.0 42.8 0.0 -4,-5 0.6987 - -2.0 PRINCIPAL:1 ENSMUSG00000029192 Tbc1d14 ENSMUST00000146430 ENSMUSP00000121816 TRANSLATION protein_coding - CCDS19240.2 1 694.0 0.0 7.33 10.9 170.8 0.0 -4,-5 0.7687 8 14.052 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000130417 ENSMUSP00000116519 TRANSLATION protein_coding - CCDS51480.1 5 714.0 0.0 7.33 0.1 170.8 0.0 -4,-7 0.2705 8 12.0 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000136189 ENSMUSP00000115467 TRANSLATION protein_coding - - 1 618.0 0.0 5.0 0.0 62.0 0.0 -4,-5 0.0003 8 1.338 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000139182 ENSMUSP00000122452 TRANSLATION protein_coding stop - 1 178.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000144997 ENSMUSP00000120017 TRANSLATION protein_coding stop - 3 142.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000140607 ENSMUSP00000121516 TRANSLATION protein_coding - CCDS19240.2 5 694.0 0.0 7.33 10.9 170.8 0.0 -4,-5 0.7687 8 14.052 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000126077 ENSMUSP00000114508 TRANSLATION protein_coding - CCDS51479.1 5 413.0 0.0 7.33 20.3 170.8 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029192 Tbc1d14 ENSMUST00000150733 - NO_TRANSLATION retained_intron ENSMUSG00000029192 Tbc1d14 ENSMUST00000136490 ENSMUSP00000117997 TRANSLATION protein_coding stop - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000149157 - NO_TRANSLATION retained_intron ENSMUSG00000029192 Tbc1d14 ENSMUST00000141017 ENSMUSP00000116217 TRANSLATION nonsense_mediated_decay - - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000146252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029192 Tbc1d14 ENSMUST00000173757 ENSMUSP00000134405 TRANSLATION nonsense_mediated_decay start - 3 35.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000031094 ENSMUSP00000031094 TRANSLATION protein_coding - CCDS19240.2 1 694.0 0.0 7.33 10.9 170.8 0.0 -4,-5 0.7687 8 14.052 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000150813 ENSMUSP00000115926 TRANSLATION nonsense_mediated_decay - - 2 305.0 0.0 5.52 0.0 116.8 0.0 -4,-5 0.0014 2 -2.0 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000156658 - NO_TRANSLATION retained_intron ENSMUSG00000029192 Tbc1d14 ENSMUST00000124036 ENSMUSP00000117414 TRANSLATION protein_coding - CCDS51480.1 5 714.0 0.0 7.33 0.1 170.8 0.0 -4,-7 0.2705 8 12.0 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000141626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029192 Tbc1d14 ENSMUST00000173532 ENSMUSP00000133477 TRANSLATION protein_coding start - 3 191.0 0.0 1.81 0.0 31.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000171385 ENSMUSP00000131876 TRANSLATION protein_coding - CCDS51479.1 1 413.0 0.0 7.33 20.3 170.8 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029192 Tbc1d14 ENSMUST00000147603 ENSMUSP00000119408 TRANSLATION protein_coding stop - 5 21.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029192 Tbc1d14 ENSMUST00000139117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029192 Tbc1d14 ENSMUST00000140179 ENSMUSP00000116735 TRANSLATION protein_coding stop - 5 260.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000029710 Ephb4 ENSMUST00000166239 ENSMUSP00000130275 TRANSLATION protein_coding - CCDS19767.1 5 987.0 18.0 11.375 6.4 794.3 1.0 1,-4 0.9345 14 15.91 ALTERNATIVE:1 ENSMUSG00000029710 Ephb4 ENSMUST00000061244 ENSMUSP00000051622 TRANSLATION protein_coding - CCDS19767.1 1 987.0 18.0 11.375 6.4 794.3 1.0 1,-4 0.9345 14 15.91 ALTERNATIVE:1 ENSMUSG00000029710 Ephb4 ENSMUST00000111055 ENSMUSP00000106684 TRANSLATION protein_coding - CCDS51671.1 1 996.0 18.0 11.41856 6.4 794.3 1.0 1,-4 1.0 14 16.0 PRINCIPAL:4 ENSMUSG00000029710 Ephb4 ENSMUST00000144296 ENSMUSP00000115731 TRANSLATION nonsense_mediated_decay - CCDS19767.1 1 987.0 18.0 11.375 6.4 794.3 1.0 1,-4 0.9345 - -2.0 MINOR ENSMUSG00000029710 Ephb4 ENSMUST00000111054 ENSMUSP00000106683 TRANSLATION protein_coding - - 5 935.0 18.0 11.075 0.0 725.8 1.0 1,-4 0.1454 13 12.71 MINOR ENSMUSG00000046000 Naa11 ENSMUST00000060265 ENSMUSP00000057336 TRANSLATION protein_coding - CCDS19453.1 1 218.0 21.0 1.0 0.4 59.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000034855 Cxcl10 ENSMUST00000201176 - NO_TRANSLATION retained_intron ENSMUSG00000034855 Cxcl10 ENSMUST00000138169 - NO_TRANSLATION retained_intron ENSMUSG00000034855 Cxcl10 ENSMUST00000038816 ENSMUSP00000047646 TRANSLATION protein_coding - CCDS39153.1 1 98.0 0.0 2.75 5.8 51.6 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000034855 Cxcl10 ENSMUST00000118006 ENSMUSP00000114134 TRANSLATION protein_coding - - 1 93.0 0.0 2.75 0.7 51.6 0.0 4,-1 0.2302 1 12.0 MINOR ENSMUSG00000028864 Hgf ENSMUST00000199900 - NO_TRANSLATION retained_intron ENSMUSG00000028864 Hgf ENSMUST00000196645 ENSMUSP00000142517 TRANSLATION protein_coding - CCDS80213.1 1 723.0 0.0 14.15 11.3 592.0 0.0 3,-2 0.9013 2 10.6 ALTERNATIVE:1 ENSMUSG00000028864 Hgf ENSMUST00000200189 - NO_TRANSLATION retained_intron ENSMUSG00000028864 Hgf ENSMUST00000030683 ENSMUSP00000030683 TRANSLATION protein_coding - CCDS19097.1 1 728.0 0.0 14.15 11.3 601.9 0.0 3,-2 1.0 2 11.0 PRINCIPAL:4 ENSMUSG00000028864 Hgf ENSMUST00000199581 ENSMUSP00000143424 TRANSLATION protein_coding - CCDS19097.1 1 728.0 0.0 14.15 11.3 601.9 0.0 3,-2 1.0 2 11.0 PRINCIPAL:4 ENSMUSG00000028864 Hgf ENSMUST00000195957 - NO_TRANSLATION retained_intron ENSMUSG00000053030 Spink2 ENSMUST00000121825 ENSMUSP00000113823 TRANSLATION protein_coding - CCDS80306.1 3 59.0 0.0 1.948 0.0 60.8 0.0 -4,-7 0.117 3 6.98 ALTERNATIVE:2 ENSMUSG00000053030 Spink2 ENSMUST00000065216 ENSMUSP00000067117 TRANSLATION protein_coding - CCDS39121.1 1 86.0 0.0 2.348 0.0 60.8 0.0 4,-1 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000053030 Spink2 ENSMUST00000120429 ENSMUSP00000112806 TRANSLATION protein_coding - CCDS80307.1 1 56.0 0.0 0.598 0.0 0.0 0.0 4,-1 0.0569 - 1.53 MINOR ENSMUSG00000118522 Muc12 ENSMUST00000239135 ENSMUSP00000159075 TRANSLATION protein_coding start - - 341.0 0.0 5.9975 0.0 28.9 0.0 -4,-5 0.7428 - -2.0 PRINCIPAL:1 ENSMUSG00000029699 Ssc4d ENSMUST00000154181 ENSMUSP00000123008 TRANSLATION protein_coding stop - 5 174.0 5.0 2.05 0.0 107.8 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000029699 Ssc4d ENSMUST00000054895 ENSMUSP00000050439 TRANSLATION protein_coding - - 1 134.0 0.0 1.0 0.0 108.7 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000029699 Ssc4d ENSMUST00000111150 ENSMUSP00000106780 TRANSLATION protein_coding - - 2 108.0 0.0 1.0 0.0 108.7 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000029699 Ssc4d ENSMUST00000154696 ENSMUSP00000117071 TRANSLATION protein_coding start/stop - 5 116.0 2.0 1.0 0.0 43.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029699 Ssc4d ENSMUST00000153823 ENSMUSP00000122958 TRANSLATION protein_coding start/stop - 3 166.0 4.0 1.33 0.0 105.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029699 Ssc4d ENSMUST00000111153 ENSMUSP00000106783 TRANSLATION protein_coding - CCDS51664.1 5 586.0 14.0 4.63 4.3 415.1 0.0 -3,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000029699 Ssc4d ENSMUST00000111152 ENSMUSP00000106782 TRANSLATION protein_coding - CCDS51664.1 5 586.0 14.0 4.63 4.3 415.1 0.0 -3,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000096949 Gm26897 ENSMUST00000180627 ENSMUSP00000138054 TRANSLATION protein_coding start/stop - 5 31.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - -2.0 PRINCIPAL:1 ENSMUSG00000057315 Arhgap24 ENSMUST00000070000 ENSMUSP00000070048 TRANSLATION protein_coding - CCDS84922.1 5 657.0 0.0 2.65 16.3 164.7 0.0 -4,-6 0.6947 8 6.748 MINOR ENSMUSG00000057315 Arhgap24 ENSMUST00000112854 ENSMUSP00000108475 TRANSLATION protein_coding - CCDS19475.1 5 654.0 0.0 3.29 18.5 164.7 0.0 -4,-5 0.6879 9 8.53 MINOR ENSMUSG00000057315 Arhgap24 ENSMUST00000112853 ENSMUSP00000108474 TRANSLATION protein_coding - CCDS19475.1 5 654.0 0.0 3.29 18.5 164.7 0.0 -4,-5 0.6879 9 8.53 MINOR ENSMUSG00000057315 Arhgap24 ENSMUST00000094559 ENSMUSP00000092138 TRANSLATION protein_coding - CCDS19474.1 1 747.0 8.0 4.69 17.2 242.5 0.0 -4,-5 1.0 10 21.704 PRINCIPAL:1 ENSMUSG00000057315 Arhgap24 ENSMUST00000112852 ENSMUSP00000108473 TRANSLATION protein_coding - CCDS19475.1 1 654.0 0.0 3.29 18.5 164.7 0.0 -4,-5 0.6879 9 8.53 MINOR ENSMUSG00000057315 Arhgap24 ENSMUST00000073302 ENSMUSP00000073028 TRANSLATION protein_coding - CCDS19475.1 1 654.0 0.0 3.29 18.5 164.7 0.0 -4,-5 0.6879 9 8.53 MINOR ENSMUSG00000057315 Arhgap24 ENSMUST00000130222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057315 Arhgap24 ENSMUST00000126125 - NO_TRANSLATION retained_intron ENSMUSG00000005103 Wdr1 ENSMUST00000202199 - NO_TRANSLATION retained_intron ENSMUSG00000005103 Wdr1 ENSMUST00000200909 - NO_TRANSLATION retained_intron ENSMUSG00000005103 Wdr1 ENSMUST00000201538 - NO_TRANSLATION retained_intron ENSMUSG00000005103 Wdr1 ENSMUST00000202766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005103 Wdr1 ENSMUST00000201059 - NO_TRANSLATION retained_intron ENSMUSG00000005103 Wdr1 ENSMUST00000005234 ENSMUSP00000005234 TRANSLATION protein_coding - CCDS51485.1 1 606.0 0.0 14.58 29.4 113.9 0.0 -4,-5 1.0 27 16.0 PRINCIPAL:1 ENSMUSG00000005103 Wdr1 ENSMUST00000202496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005103 Wdr1 ENSMUST00000201330 - NO_TRANSLATION retained_intron ENSMUSG00000005103 Wdr1 ENSMUST00000201260 ENSMUSP00000143937 TRANSLATION protein_coding - - 1 333.0 0.0 7.75 1.0 63.5 0.0 -4,-5 0.0049 11 2.976 MINOR ENSMUSG00000005103 Wdr1 ENSMUST00000201150 - NO_TRANSLATION retained_intron ENSMUSG00000005103 Wdr1 ENSMUST00000201456 - NO_TRANSLATION retained_intron ENSMUSG00000072754 Lrcol1 ENSMUST00000100924 ENSMUSP00000098484 TRANSLATION protein_coding - - 1 122.0 0.0 3.83 0.0 117.2 0.0 -4,-5 0.6882 1 8.0 PRINCIPAL:4 ENSMUSG00000072754 Lrcol1 ENSMUST00000190060 - NO_TRANSLATION retained_intron ENSMUSG00000072754 Lrcol1 ENSMUST00000190963 ENSMUSP00000140133 TRANSLATION nonsense_mediated_decay - - 1 92.0 0.0 1.0 0.0 51.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000072754 Lrcol1 ENSMUST00000185691 ENSMUSP00000139397 TRANSLATION protein_coding - CCDS80364.1 1 161.0 0.0 3.83 0.0 117.2 0.0 3,-2 0.4613 1 8.0 ALTERNATIVE:2 ENSMUSG00000072754 Lrcol1 ENSMUST00000186408 ENSMUSP00000140222 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0021 - -2.0 MINOR ENSMUSG00000039296 Spdye4a ENSMUST00000085733 ENSMUSP00000082882 TRANSLATION protein_coding - CCDS39368.1 1 268.0 0.0 2.95 0.1 199.8 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000039296 Spdye4a ENSMUST00000160502 ENSMUSP00000123959 TRANSLATION protein_coding - CCDS80456.1 1 173.0 0.0 1.45 0.0 85.8 0.0 -4,-5 0.0126 - 2.952 MINOR ENSMUSG00000039296 Spdye4a ENSMUST00000195900 ENSMUSP00000142788 TRANSLATION protein_coding - - 5 231.0 0.0 2.95 0.4 199.8 0.0 -4,-5 0.0291 - 8.0 ALTERNATIVE:2 ENSMUSG00000060961 Slc4a4 ENSMUST00000113218 ENSMUSP00000108844 TRANSLATION protein_coding - CCDS57352.1 1 1070.0 0.0 12.83 14.4 1099.7 7.0 -4,-5 0.9991 15 12.0 ALTERNATIVE:1 ENSMUSG00000060961 Slc4a4 ENSMUST00000239214 ENSMUSP00000159229 TRANSLATION protein_coding - - - 1111.0 0.0 12.7825 8.4 1113.9 7.0 -4,-5 0.7102 17 9.112 MINOR ENSMUSG00000060961 Slc4a4 ENSMUST00000135283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060961 Slc4a4 ENSMUST00000130041 ENSMUSP00000118413 TRANSLATION protein_coding - - 1 1035.0 0.0 12.5825 2.8 1109.1 7.0 -4,-7 0.2718 14 8.038 MINOR ENSMUSG00000060961 Slc4a4 ENSMUST00000113216 ENSMUSP00000108842 TRANSLATION protein_coding - - 1 157.0 0.0 2.33 0.0 63.9 0.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000060961 Slc4a4 ENSMUST00000144713 ENSMUSP00000122975 TRANSLATION protein_coding stop - 3 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000060961 Slc4a4 ENSMUST00000148750 ENSMUSP00000119325 TRANSLATION protein_coding - CCDS19406.1 5 1079.0 0.0 12.5825 14.4 1109.1 7.0 -4,-5 1.0 16 11.502 PRINCIPAL:3 ENSMUSG00000060961 Slc4a4 ENSMUST00000156238 ENSMUSP00000121744 TRANSLATION protein_coding - CCDS51541.1 5 1094.0 0.0 12.5825 9.1 1109.1 7.0 -4,-5 0.9222 19 9.918 MINOR ENSMUSG00000060961 Slc4a4 ENSMUST00000134303 ENSMUSP00000119976 TRANSLATION protein_coding stop - 5 233.0 0.0 3.32 0.0 109.5 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000060961 Slc4a4 ENSMUST00000238265 ENSMUSP00000158605 TRANSLATION protein_coding stop - - 171.0 0.0 1.33 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000094025 Gm8879 ENSMUST00000170260 ENSMUSP00000128144 TRANSLATION protein_coding - - 5 157.0 0.0 1.306 0.0 81.6 0.0 -4,-7 0.772 - 12.0 PRINCIPAL:1 ENSMUSG00000057816 Cfap299 ENSMUST00000197724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057816 Cfap299 ENSMUST00000197812 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057816 Cfap299 ENSMUST00000080333 ENSMUSP00000079208 TRANSLATION protein_coding - CCDS19456.1 1 233.0 0.0 4.0 24.2 316.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057816 Cfap299 ENSMUST00000196339 ENSMUSP00000142864 TRANSLATION nonsense_mediated_decay start - 1 112.0 0.0 1.066 0.0 110.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056035 Cyp3a11 ENSMUST00000035918 ENSMUSP00000037665 TRANSLATION protein_coding - CCDS19865.1 1 504.0 30.0 11.55 17.4 450.9 0.0 0,-4 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000056035 Cyp3a11 ENSMUST00000199857 - NO_TRANSLATION retained_intron ENSMUSG00000063447 Ube2d2b ENSMUST00000072578 ENSMUSP00000072387 TRANSLATION protein_coding - CCDS71632.1 - 147.0 0.0 1.0 34.9 180.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000028995 Hycc1 ENSMUST00000197617 ENSMUSP00000143784 TRANSLATION protein_coding - - 5 338.0 0.0 4.405 0.0 331.8 0.0 -4,-6 0.0 6 3.87 MINOR ENSMUSG00000028995 Hycc1 ENSMUST00000101513 ENSMUSP00000099050 TRANSLATION protein_coding - CCDS80221.1 1 370.0 0.0 5.655 3.2 425.6 0.0 -4,-5 0.4223 10 12.344 MINOR ENSMUSG00000028995 Hycc1 ENSMUST00000198867 - NO_TRANSLATION retained_intron ENSMUSG00000028995 Hycc1 ENSMUST00000126828 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028995 Hycc1 ENSMUST00000147179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028995 Hycc1 ENSMUST00000115109 ENSMUSP00000110761 TRANSLATION protein_coding - - 5 420.0 0.0 5.655 26.7 425.6 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000028995 Hycc1 ENSMUST00000030849 ENSMUSP00000030849 TRANSLATION protein_coding - CCDS19113.1 1 521.0 0.0 5.655 16.0 425.6 0.0 -4,-5 0.9314 16 14.336 MINOR ENSMUSG00000029657 Hsph1 ENSMUST00000200825 ENSMUSP00000143913 TRANSLATION protein_coding stop - 2 100.0 5.0 2.83 0.0 112.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000029657 Hsph1 ENSMUST00000074846 ENSMUSP00000074392 TRANSLATION protein_coding - CCDS85010.1 1 814.0 21.0 13.82 9.0 629.2 0.0 -4,-5 0.8403 42 20.092 MINOR ENSMUSG00000029657 Hsph1 ENSMUST00000201559 ENSMUSP00000144043 TRANSLATION protein_coding stop - 5 144.0 6.0 4.16 0.0 185.7 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000029657 Hsph1 ENSMUST00000201877 - NO_TRANSLATION retained_intron ENSMUSG00000029657 Hsph1 ENSMUST00000201431 - NO_TRANSLATION retained_intron ENSMUSG00000029657 Hsph1 ENSMUST00000202089 ENSMUSP00000144297 TRANSLATION protein_coding - - 5 817.0 21.0 12.82 0.0 555.2 0.0 -4,-5 0.0222 40 11.562 MINOR ENSMUSG00000029657 Hsph1 ENSMUST00000202361 ENSMUSP00000144413 TRANSLATION protein_coding - CCDS19885.1 1 858.0 21.0 13.82 16.3 621.9 0.0 -4,-5 1.0 42 21.562 PRINCIPAL:1 ENSMUSG00000029657 Hsph1 ENSMUST00000202137 - NO_TRANSLATION retained_intron ENSMUSG00000029657 Hsph1 ENSMUST00000201666 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029657 Hsph1 ENSMUST00000201452 ENSMUSP00000144654 TRANSLATION protein_coding - CCDS19885.1 1 858.0 21.0 13.82 16.3 621.9 0.0 -4,-5 1.0 42 21.562 PRINCIPAL:1 ENSMUSG00000029657 Hsph1 ENSMUST00000200805 ENSMUSP00000143925 TRANSLATION protein_coding stop - 3 94.0 1.0 2.66 0.0 122.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000066735 Vkorc1l1 ENSMUST00000202298 ENSMUSP00000144266 TRANSLATION nonsense_mediated_decay start - 3 82.0 0.0 1.7 0.0 27.6 2.0 -3,-1 0.0 1 -2.0 MINOR ENSMUSG00000066735 Vkorc1l1 ENSMUST00000201855 ENSMUSP00000144608 TRANSLATION protein_coding - CCDS19704.1 1 127.0 0.0 1.5 0.4 0.0 2.0 -3,-1 0.0167 2 1.002 MINOR ENSMUSG00000066735 Vkorc1l1 ENSMUST00000202486 ENSMUSP00000144156 TRANSLATION nonsense_mediated_decay start - 5 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066735 Vkorc1l1 ENSMUST00000051758 ENSMUSP00000059139 TRANSLATION protein_coding - CCDS19703.1 1 176.0 0.0 4.0 28.5 103.9 4.0 -3,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000066735 Vkorc1l1 ENSMUST00000073945 ENSMUSP00000073601 TRANSLATION protein_coding - CCDS80417.1 2 130.0 0.0 3.0 0.1 64.4 2.0 -4,-1 0.0087 3 7.632 MINOR ENSMUSG00000028959 Fastk ENSMUST00000131946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028959 Fastk ENSMUST00000134958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028959 Fastk ENSMUST00000144866 - NO_TRANSLATION retained_intron ENSMUSG00000028959 Fastk ENSMUST00000123144 - NO_TRANSLATION retained_intron ENSMUSG00000028959 Fastk ENSMUST00000132498 - NO_TRANSLATION retained_intron ENSMUSG00000028959 Fastk ENSMUST00000149085 - NO_TRANSLATION retained_intron ENSMUSG00000028959 Fastk ENSMUST00000149537 - NO_TRANSLATION retained_intron ENSMUSG00000028959 Fastk ENSMUST00000115041 ENSMUSP00000110693 TRANSLATION protein_coding - - 5 408.0 0.0 1.98 1.0 149.9 0.0 -4,-2 0.2678 2 12.0 MINOR ENSMUSG00000028959 Fastk ENSMUST00000144389 ENSMUSP00000123447 TRANSLATION nonsense_mediated_decay - - 5 141.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000028959 Fastk ENSMUST00000030800 ENSMUSP00000030800 TRANSLATION protein_coding - CCDS19120.1 1 545.0 0.0 1.98 8.1 149.9 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000028959 Fastk ENSMUST00000132109 - NO_TRANSLATION retained_intron ENSMUSG00000028959 Fastk ENSMUST00000151900 - NO_TRANSLATION retained_intron ENSMUSG00000028959 Fastk ENSMUST00000139307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028959 Fastk ENSMUST00000130577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028959 Fastk ENSMUST00000115043 ENSMUSP00000110695 TRANSLATION protein_coding - - 1 516.0 0.0 1.678 0.0 119.3 0.0 -4,-2 0.0105 2 9.246 MINOR ENSMUSG00000058643 Speer4f1 ENSMUST00000076099 ENSMUSP00000075467 TRANSLATION protein_coding - CCDS19098.1 1 258.0 0.0 3.0 0.0 63.9 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000019518 Ap4m1 ENSMUST00000155745 - NO_TRANSLATION retained_intron ENSMUSG00000019518 Ap4m1 ENSMUST00000157031 - NO_TRANSLATION retained_intron ENSMUSG00000019518 Ap4m1 ENSMUST00000143241 ENSMUSP00000123770 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019518 Ap4m1 ENSMUST00000151318 ENSMUSP00000121338 TRANSLATION protein_coding stop - 5 191.0 0.0 3.25 0.0 23.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000019518 Ap4m1 ENSMUST00000019662 ENSMUSP00000019662 TRANSLATION protein_coding - CCDS19794.1 1 449.0 0.0 9.3 11.4 228.9 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000019518 Ap4m1 ENSMUST00000142687 - NO_TRANSLATION retained_intron ENSMUSG00000019518 Ap4m1 ENSMUST00000134100 - NO_TRANSLATION retained_intron ENSMUSG00000018076 Med13l ENSMUST00000201696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018076 Med13l ENSMUST00000202787 - NO_TRANSLATION retained_intron ENSMUSG00000018076 Med13l ENSMUST00000202538 - NO_TRANSLATION retained_intron ENSMUSG00000018076 Med13l ENSMUST00000201614 - NO_TRANSLATION retained_intron ENSMUSG00000018076 Med13l ENSMUST00000201010 ENSMUSP00000144092 TRANSLATION protein_coding - CCDS84948.1 5 2216.0 0.0 0.0 0.3 817.0 0.0 -4,-5 0.4473 10 0.0 ALTERNATIVE:2 ENSMUSG00000018076 Med13l ENSMUST00000100816 ENSMUSP00000098379 TRANSLATION protein_coding - CCDS57375.1 2 2207.0 0.0 0.0 0.3 819.1 0.0 -4,-5 1.0 10 0.0 PRINCIPAL:2 ENSMUSG00000029369 Afm ENSMUST00000128740 ENSMUSP00000117180 TRANSLATION protein_coding - - 1 430.0 0.0 8.5 0.0 326.5 0.0 4,-1 0.0018 14 0.0 MINOR ENSMUSG00000029369 Afm ENSMUST00000113179 ENSMUSP00000108804 TRANSLATION protein_coding - CCDS39141.1 1 608.0 0.0 11.75 2.6 473.8 0.0 4,-1 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000095710 Gm8871 ENSMUST00000168945 ENSMUSP00000132192 TRANSLATION protein_coding start - 5 154.0 0.0 1.206 0.0 78.1 0.0 -4,-5 0.0571 - -2.0 ALTERNATIVE:2 ENSMUSG00000095710 Gm8871 ENSMUST00000163544 ENSMUSP00000128435 TRANSLATION protein_coding start - 5 190.0 0.0 1.206 0.0 78.1 0.0 -4,-6 0.7698 - -2.0 PRINCIPAL:5 ENSMUSG00000033540 Idua ENSMUST00000140620 ENSMUSP00000119624 TRANSLATION nonsense_mediated_decay - - 5 151.0 0.0 3.05 0.0 167.3 0.0 3,-1 0.0 - -2.0 MINOR ENSMUSG00000033540 Idua ENSMUST00000151445 - NO_TRANSLATION retained_intron ENSMUSG00000033540 Idua ENSMUST00000071650 ENSMUSP00000071577 TRANSLATION protein_coding - CCDS19516.2 1 643.0 0.0 14.38 2.6 731.2 0.0 3,-1 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000033540 Idua ENSMUST00000159464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033540 Idua ENSMUST00000119212 ENSMUSP00000113190 TRANSLATION protein_coding - CCDS71635.1 1 596.0 0.0 13.38 0.0 628.1 0.0 4,-1 0.0625 4 4.002 MINOR ENSMUSG00000033540 Idua ENSMUST00000133482 - NO_TRANSLATION retained_intron ENSMUSG00000033540 Idua ENSMUST00000139734 ENSMUSP00000117694 TRANSLATION nonsense_mediated_decay - - 5 281.0 0.0 4.3 0.0 268.4 0.0 3,-1 0.0005 - -2.0 MINOR ENSMUSG00000033540 Idua ENSMUST00000112563 ENSMUSP00000108182 TRANSLATION protein_coding - CCDS19516.2 1 643.0 0.0 14.38 2.6 731.2 0.0 3,-1 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000034438 Gbp8 ENSMUST00000112718 ENSMUSP00000108338 TRANSLATION protein_coding - CCDS19490.1 1 525.0 15.0 7.2 0.0 674.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034438 Gbp8 ENSMUST00000031235 ENSMUSP00000031235 TRANSLATION protein_coding - CCDS19490.1 5 525.0 15.0 7.2 0.0 674.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034438 Gbp8 ENSMUST00000198326 - NO_TRANSLATION retained_intron ENSMUSG00000034438 Gbp8 ENSMUST00000199483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005373 Mlxipl ENSMUST00000142385 ENSMUSP00000144328 TRANSLATION nonsense_mediated_decay - - 2 545.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0014 7 -2.0 MINOR ENSMUSG00000005373 Mlxipl ENSMUST00000128691 ENSMUSP00000121348 TRANSLATION nonsense_mediated_decay - - 1 714.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0045 9 -2.0 MINOR ENSMUSG00000005373 Mlxipl ENSMUST00000141770 - NO_TRANSLATION retained_intron ENSMUSG00000005373 Mlxipl ENSMUST00000129008 ENSMUSP00000114933 TRANSLATION nonsense_mediated_decay - - 1 556.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0014 7 -2.0 MINOR ENSMUSG00000005373 Mlxipl ENSMUST00000154840 ENSMUSP00000121668 TRANSLATION protein_coding start/stop - 3 181.0 0.0 0.597 0.0 35.7 0.0 -4,-6 0.005 2 -2.0 MINOR ENSMUSG00000005373 Mlxipl ENSMUST00000123370 ENSMUSP00000116358 TRANSLATION protein_coding start - 2 179.0 0.0 0.597 0.0 50.6 0.0 -4,-6 0.0178 2 -2.0 MINOR ENSMUSG00000005373 Mlxipl ENSMUST00000153519 ENSMUSP00000122198 TRANSLATION nonsense_mediated_decay - - 1 744.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0119 9 -2.0 MINOR ENSMUSG00000005373 Mlxipl ENSMUST00000201977 ENSMUSP00000144299 TRANSLATION protein_coding stop - 3 220.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005373 Mlxipl ENSMUST00000202431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005373 Mlxipl ENSMUST00000005507 ENSMUSP00000005507 TRANSLATION protein_coding - CCDS39316.1 1 864.0 0.0 1.597 0.4 50.6 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000029422 Rsrc2 ENSMUST00000050827 ENSMUSP00000050563 TRANSLATION protein_coding - CCDS39272.1 5 376.0 0.0 0.0 5.9 64.6 0.0 -4,-6 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000029422 Rsrc2 ENSMUST00000182861 ENSMUSP00000138725 TRANSLATION nonsense_mediated_decay start - 5 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000111515 ENSMUSP00000107140 TRANSLATION protein_coding - - 5 189.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000182809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029422 Rsrc2 ENSMUST00000182948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029422 Rsrc2 ENSMUST00000182241 ENSMUSP00000138162 TRANSLATION nonsense_mediated_decay - - 5 75.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000182612 - NO_TRANSLATION retained_intron ENSMUSG00000029422 Rsrc2 ENSMUST00000182411 ENSMUSP00000138439 TRANSLATION nonsense_mediated_decay - - 3 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000182584 ENSMUSP00000138260 TRANSLATION nonsense_mediated_decay start - 5 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000182556 ENSMUSP00000138631 TRANSLATION nonsense_mediated_decay - - 1 197.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000182489 ENSMUSP00000138518 TRANSLATION protein_coding - - 5 387.0 0.0 0.0 3.1 64.6 0.0 -4,-5 0.5762 4 6.858 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000057795 ENSMUSP00000049942 TRANSLATION protein_coding - CCDS39272.1 5 376.0 0.0 0.0 5.9 64.6 0.0 -4,-6 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000029422 Rsrc2 ENSMUST00000182309 ENSMUSP00000138691 TRANSLATION protein_coding - CCDS39271.1 5 434.0 0.0 0.0 0.0 64.6 0.0 -4,-5 0.1213 5 6.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000181980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029422 Rsrc2 ENSMUST00000182985 - NO_TRANSLATION retained_intron ENSMUSG00000029422 Rsrc2 ENSMUST00000182955 ENSMUSP00000138280 TRANSLATION protein_coding - - 5 203.0 0.0 0.0 0.0 64.6 0.0 -4,-5 0.0221 3 6.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000182744 - NO_TRANSLATION retained_intron ENSMUSG00000029422 Rsrc2 ENSMUST00000182542 - NO_TRANSLATION retained_intron ENSMUSG00000029422 Rsrc2 ENSMUST00000182015 ENSMUSP00000138210 TRANSLATION nonsense_mediated_decay - - 1 75.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000182093 ENSMUSP00000138242 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000183253 - NO_TRANSLATION retained_intron ENSMUSG00000029422 Rsrc2 ENSMUST00000183147 ENSMUSP00000138301 TRANSLATION protein_coding stop - 5 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029422 Rsrc2 ENSMUST00000182968 - NO_TRANSLATION retained_intron ENSMUSG00000069355 Gm5152 ENSMUST00000249475 ENSMUSP00000159770 TRANSLATION protein_coding - - - 157.0 0.0 1.306 0.0 77.9 0.0 -4,-6 0.7654 - 12.0 PRINCIPAL:1 ENSMUSG00000069355 Gm5152 ENSMUST00000081735 ENSMUSP00000080432 TRANSLATION protein_coding - - 5 157.0 0.0 1.306 0.0 77.9 0.0 -4,-6 0.7654 - 12.0 PRINCIPAL:1 ENSMUSG00000069355 Gm5152 ENSMUST00000249476 ENSMUSP00000159771 TRANSLATION protein_coding - - - 157.0 0.0 1.306 0.0 77.9 0.0 -4,-6 0.7654 - 12.0 PRINCIPAL:1 ENSMUSG00000091049 Gm1979 ENSMUST00000170224 ENSMUSP00000130782 TRANSLATION protein_coding start - 5 221.0 0.0 2.25 0.0 83.0 0.0 -4,-6 0.0129 - -2.0 MINOR ENSMUSG00000091049 Gm1979 ENSMUST00000168875 ENSMUSP00000130718 TRANSLATION protein_coding - CCDS59671.1 5 267.0 0.0 2.25 0.0 83.0 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029447 Cct6a ENSMUST00000202854 - NO_TRANSLATION retained_intron ENSMUSG00000029447 Cct6a ENSMUST00000202262 - NO_TRANSLATION retained_intron ENSMUSG00000029447 Cct6a ENSMUST00000201414 ENSMUSP00000159385 TRANSLATION protein_coding - - 5 531.0 4.0 13.0 33.9 564.7 0.0 -4,-7 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000029447 Cct6a ENSMUST00000201653 - NO_TRANSLATION retained_intron ENSMUSG00000062438 Adam1b ENSMUST00000079368 ENSMUSP00000078343 TRANSLATION protein_coding - CCDS19636.1 - 806.0 18.0 0.2 0.0 452.9 0.0 1,-3 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000006642 Tcf23 ENSMUST00000006818 ENSMUSP00000006818 TRANSLATION protein_coding - CCDS19168.1 1 209.0 0.0 1.0 8.6 42.9 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000060063 Alox5ap ENSMUST00000202629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060063 Alox5ap ENSMUST00000071130 ENSMUSP00000071130 TRANSLATION protein_coding - CCDS39407.1 1 161.0 0.0 4.58 24.6 40.1 4.0 -2,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000060063 Alox5ap ENSMUST00000200806 ENSMUSP00000144472 TRANSLATION protein_coding stop - 2 71.0 0.0 1.75 0.0 0.0 2.0 -4,-2 0.0017 2 -2.0 MINOR ENSMUSG00000060063 Alox5ap ENSMUST00000200928 ENSMUSP00000144115 TRANSLATION protein_coding - - 3 73.0 0.0 1.75 0.0 0.0 2.0 -4,-2 0.0017 3 0.342 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202165 ENSMUSP00000144420 TRANSLATION protein_coding start/stop - 3 193.0 0.0 4.75 0.0 145.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000200798 ENSMUSP00000144521 TRANSLATION nonsense_mediated_decay start - 5 74.0 0.0 0.9 0.0 84.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000201495 ENSMUSP00000144003 TRANSLATION nonsense_mediated_decay start - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000201608 - NO_TRANSLATION retained_intron ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202268 - NO_TRANSLATION retained_intron ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023079 Gtf2ird1 ENSMUST00000201441 ENSMUSP00000144447 TRANSLATION protein_coding start/stop - 5 262.0 0.0 3.682 0.0 196.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202202 - NO_TRANSLATION retained_intron ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202829 ENSMUSP00000144604 TRANSLATION protein_coding start - 1 345.0 0.0 6.28 0.0 264.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000100654 ENSMUSP00000098219 TRANSLATION protein_coding - CCDS39303.1 1 974.0 0.0 11.432 0.0 521.2 0.0 -4,-5 0.1407 8 3.74 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000100652 ENSMUSP00000098217 TRANSLATION protein_coding - CCDS39307.1 1 1104.0 0.0 13.262 0.1 622.7 0.0 -4,-5 0.5396 9 8.0 ALTERNATIVE:2 ENSMUSG00000023079 Gtf2ird1 ENSMUST00000111245 ENSMUSP00000106876 TRANSLATION protein_coding - CCDS39302.1 1 1026.0 0.0 13.262 0.1 622.8 0.0 -4,-5 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202334 - NO_TRANSLATION retained_intron ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202280 ENSMUSP00000143897 TRANSLATION protein_coding - - 5 942.0 0.0 11.262 5.4 517.9 0.0 -4,-5 0.6272 8 5.398 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000074114 ENSMUSP00000073752 TRANSLATION protein_coding - CCDS51657.1 1 1001.0 0.0 11.312 0.1 517.9 0.0 -4,-5 0.2415 9 3.5 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000200817 - NO_TRANSLATION retained_intron ENSMUSG00000023079 Gtf2ird1 ENSMUST00000100650 ENSMUSP00000098215 TRANSLATION protein_coding - CCDS39306.1 1 1077.0 0.0 13.262 0.1 622.7 0.0 -4,-5 0.5449 9 8.0 ALTERNATIVE:2 ENSMUSG00000023079 Gtf2ird1 ENSMUST00000201647 ENSMUSP00000144391 TRANSLATION protein_coding stop - 5 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202554 ENSMUSP00000143809 TRANSLATION protein_coding - CCDS84967.1 1 1058.0 0.0 13.262 0.1 622.7 0.0 -4,-5 0.56 8 8.0 ALTERNATIVE:2 ENSMUSG00000023079 Gtf2ird1 ENSMUST00000073161 ENSMUSP00000072904 TRANSLATION protein_coding - CCDS39305.1 1 1072.0 0.0 13.262 0.1 622.7 0.0 -4,-5 0.5519 9 8.0 ALTERNATIVE:2 ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202414 - NO_TRANSLATION retained_intron ENSMUSG00000023079 Gtf2ird1 ENSMUST00000171794 ENSMUSP00000129392 TRANSLATION protein_coding - CCDS39304.1 1 1045.0 0.0 13.262 0.1 622.8 0.0 -4,-5 0.6013 9 8.0 ALTERNATIVE:2 ENSMUSG00000023079 Gtf2ird1 ENSMUST00000167084 ENSMUSP00000132882 TRANSLATION protein_coding - - 5 969.0 0.0 10.312 0.1 517.9 0.0 -4,-5 0.058 9 1.502 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000201526 ENSMUSP00000144502 TRANSLATION nonsense_mediated_decay start - 5 66.0 0.0 0.8 0.0 84.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000111244 ENSMUSP00000106875 TRANSLATION protein_coding - CCDS39304.1 1 1045.0 0.0 13.262 0.1 622.8 0.0 -4,-5 0.6013 9 8.0 ALTERNATIVE:2 ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202321 ENSMUSP00000143948 TRANSLATION nonsense_mediated_decay start - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202104 ENSMUSP00000144203 TRANSLATION protein_coding start - 5 167.0 0.0 3.2 0.0 138.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000202335 - NO_TRANSLATION retained_intron ENSMUSG00000023079 Gtf2ird1 ENSMUST00000200944 ENSMUSP00000143848 TRANSLATION protein_coding - CCDS80420.1 1 969.0 0.0 11.312 0.1 517.9 0.0 -4,-5 0.1478 9 3.5 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000201447 ENSMUSP00000144222 TRANSLATION protein_coding start/stop - 3 193.0 0.0 2.182 0.0 148.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023079 Gtf2ird1 ENSMUST00000201704 ENSMUSP00000144373 TRANSLATION protein_coding start/stop - 3 251.0 0.0 1.982 0.0 103.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029231 Pdgfra ENSMUST00000201241 - NO_TRANSLATION retained_intron ENSMUSG00000029231 Pdgfra ENSMUST00000168162 ENSMUSP00000127173 TRANSLATION protein_coding - CCDS19351.1 1 1089.0 21.0 16.45 19.5 428.8 2.0 1,-2 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000029231 Pdgfra ENSMUST00000200822 ENSMUSP00000144634 TRANSLATION protein_coding stop - 5 243.0 0.0 4.3 0.0 0.0 0.0 1,-2 0.0031 2 -2.0 MINOR ENSMUSG00000029231 Pdgfra ENSMUST00000000476 ENSMUSP00000000476 TRANSLATION protein_coding - CCDS19351.1 1 1089.0 21.0 16.45 19.5 428.8 2.0 1,-2 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000029231 Pdgfra ENSMUST00000202161 ENSMUSP00000144485 TRANSLATION protein_coding stop - 2 88.0 0.0 0.8 0.0 0.0 0.0 1,-2 0.0016 - -2.0 MINOR ENSMUSG00000029231 Pdgfra ENSMUST00000202992 ENSMUSP00000144132 TRANSLATION protein_coding stop - 3 139.0 0.0 2.3 0.0 0.0 0.0 1,-2 0.0016 - -2.0 MINOR ENSMUSG00000029231 Pdgfra ENSMUST00000201711 ENSMUSP00000143891 TRANSLATION protein_coding - - 1 790.0 17.0 11.25 0.0 175.6 2.0 1,-2 0.009 10 3.336 MINOR ENSMUSG00000029231 Pdgfra ENSMUST00000202681 ENSMUSP00000143906 TRANSLATION protein_coding - - 1 790.0 17.0 11.25 0.0 175.6 2.0 1,-2 0.009 10 3.336 MINOR ENSMUSG00000029231 Pdgfra ENSMUST00000202186 ENSMUSP00000144543 TRANSLATION non_stop_decay stop - 1 481.0 0.0 6.88 0.0 67.8 0.0 1,-2 0.0029 4 -2.0 MINOR ENSMUSG00000050822 Slc29a4 ENSMUST00000058418 ENSMUSP00000059896 TRANSLATION protein_coding - CCDS39364.1 1 528.0 0.0 0.745 0.0 165.0 9.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050822 Slc29a4 ENSMUST00000198728 ENSMUSP00000142674 TRANSLATION protein_coding stop - 5 107.0 0.0 0.6 0.0 0.0 1.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008307 1700109H08Rik ENSMUST00000125740 ENSMUSP00000117825 TRANSLATION protein_coding start - 5 70.0 7.0 1.8 0.0 28.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008307 1700109H08Rik ENSMUST00000198134 - NO_TRANSLATION retained_intron ENSMUSG00000008307 1700109H08Rik ENSMUST00000008451 ENSMUSP00000008451 TRANSLATION protein_coding - CCDS39001.1 1 210.0 12.0 4.98 4.1 61.0 0.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000008307 1700109H08Rik ENSMUST00000147801 ENSMUSP00000118797 TRANSLATION nonsense_mediated_decay - - 1 106.0 7.0 2.58 1.0 28.4 0.0 -4,-6 0.0401 - -2.0 MINOR ENSMUSG00000008307 1700109H08Rik ENSMUST00000156973 ENSMUSP00000121586 TRANSLATION nonsense_mediated_decay start - 3 25.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049551 Fzd9 ENSMUST00000062572 ENSMUSP00000053551 TRANSLATION protein_coding - CCDS51661.1 - 592.0 0.0 0.4 0.0 551.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096139 Pramel50 ENSMUST00000201129 ENSMUSP00000144093 TRANSLATION protein_coding - CCDS57365.1 1 481.0 2.0 2.3 0.4 0.0 0.0 -4,-7 0.9834 - 8.0 PRINCIPAL:1 ENSMUSG00000036553 Sh3tc1 ENSMUST00000201511 ENSMUSP00000144175 TRANSLATION protein_coding - CCDS19234.2 1 1346.0 0.0 2.364 0.4 57.5 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000036553 Sh3tc1 ENSMUST00000151555 - NO_TRANSLATION retained_intron ENSMUSG00000036553 Sh3tc1 ENSMUST00000127288 ENSMUSP00000123034 TRANSLATION nonsense_mediated_decay start - 2 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036553 Sh3tc1 ENSMUST00000154118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036553 Sh3tc1 ENSMUST00000129664 ENSMUSP00000119811 TRANSLATION nonsense_mediated_decay start - 1 130.0 0.0 0.0 0.0 29.3 0.0 -4,-7 0.0013 - -2.0 MINOR ENSMUSG00000036553 Sh3tc1 ENSMUST00000070203 ENSMUSP00000070610 TRANSLATION protein_coding - CCDS19234.2 1 1346.0 0.0 2.364 0.4 57.5 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000036553 Sh3tc1 ENSMUST00000127825 ENSMUSP00000115376 TRANSLATION protein_coding start - 1 1147.0 0.0 1.364 0.0 45.4 0.0 -4,-6 0.0205 10 -2.0 MINOR ENSMUSG00000093910 Zfp853 ENSMUST00000212355 ENSMUSP00000148683 TRANSLATION protein_coding - - 5 733.0 19.0 0.45 0.0 118.4 0.0 -4,-5 0.8342 - 14.0 PRINCIPAL:2 ENSMUSG00000093910 Zfp853 ENSMUST00000180336 ENSMUSP00000137494 TRANSLATION protein_coding start/stop - 5 652.0 19.0 0.2 0.0 118.4 0.0 -4,-5 0.0951 - -2.0 MINOR ENSMUSG00000093910 Zfp853 ENSMUST00000212715 ENSMUSP00000148846 TRANSLATION protein_coding - - 5 718.0 19.0 0.45 0.0 118.4 0.0 -4,-5 0.2593 - 14.0 ALTERNATIVE:2 ENSMUSG00000063820 Arl9 ENSMUST00000071199 ENSMUSP00000071188 TRANSLATION protein_coding - CCDS19368.1 2 133.0 11.0 2.2 0.0 101.5 0.0 -4,-5 0.4499 - 12.954 PRINCIPAL:1 ENSMUSG00000063820 Arl9 ENSMUST00000134197 ENSMUSP00000122846 TRANSLATION protein_coding start - 5 171.0 14.0 3.0 0.0 125.6 0.0 -4,-5 0.0365 - -2.0 MINOR ENSMUSG00000095557 Gm3415 ENSMUST00000110595 ENSMUSP00000106225 TRANSLATION protein_coding - - 5 307.0 0.0 2.5 0.0 28.7 0.0 -4,0 0.7525 - 6.0 PRINCIPAL:2 ENSMUSG00000095557 Gm3415 ENSMUST00000179214 ENSMUSP00000136434 TRANSLATION protein_coding - CCDS85007.1 5 315.0 0.0 2.5 0.0 28.7 0.0 -4,0 0.4593 - 6.0 ALTERNATIVE:2 ENSMUSG00000061388 Csn1s2b ENSMUST00000113279 ENSMUSP00000108904 TRANSLATION protein_coding - CCDS80319.1 1 138.0 0.0 1.4 0.0 58.7 0.0 4,-1 0.3297 - 6.0 MINOR ENSMUSG00000061388 Csn1s2b ENSMUST00000200098 - NO_TRANSLATION retained_intron ENSMUSG00000061388 Csn1s2b ENSMUST00000101057 ENSMUSP00000098618 TRANSLATION protein_coding - - 1 81.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0041 - 0.0 MINOR ENSMUSG00000061388 Csn1s2b ENSMUST00000197301 ENSMUSP00000142449 TRANSLATION protein_coding - CCDS80320.1 5 132.0 0.0 1.4 0.0 61.4 0.0 4,-1 0.3386 - 8.0 ALTERNATIVE:2 ENSMUSG00000061388 Csn1s2b ENSMUST00000072539 ENSMUSP00000072352 TRANSLATION protein_coding - CCDS39133.1 1 143.0 0.0 1.4 0.0 63.6 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000090961 Vmn2r8 ENSMUST00000233865 ENSMUSP00000156404 TRANSLATION nonsense_mediated_decay - - - 74.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0028 - -2.0 MINOR ENSMUSG00000090961 Vmn2r8 ENSMUST00000232952 ENSMUSP00000156434 TRANSLATION protein_coding - - - 827.0 4.0 2.13 0.0 351.1 8.0 1,-3 0.092 - 14.74 MINOR ENSMUSG00000090961 Vmn2r8 ENSMUST00000172140 ENSMUSP00000126953 TRANSLATION protein_coding - CCDS51594.1 5 848.0 4.0 2.28 0.1 365.5 8.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000090961 Vmn2r8 ENSMUST00000233745 ENSMUSP00000156796 TRANSLATION protein_coding - - - 544.0 2.0 1.65 0.0 137.3 0.0 1,-3 0.0017 - 6.344 MINOR ENSMUSG00000090961 Vmn2r8 ENSMUST00000233055 ENSMUSP00000156391 TRANSLATION protein_coding - - - 565.0 2.0 1.8 0.0 150.2 0.0 1,-3 0.0017 1 6.734 MINOR ENSMUSG00000090961 Vmn2r8 ENSMUST00000233220 - NO_TRANSLATION retained_intron ENSMUSG00000045102 Poln ENSMUST00000202741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045102 Poln ENSMUST00000202825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045102 Poln ENSMUST00000042954 ENSMUSP00000036110 TRANSLATION protein_coding - CCDS39067.1 1 866.0 5.0 15.46 1.0 410.6 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000045102 Poln ENSMUST00000202638 ENSMUSP00000143793 TRANSLATION protein_coding - CCDS80263.1 1 822.0 5.0 14.46 0.0 219.2 0.0 -4,-5 0.0792 - 9.002 MINOR ENSMUSG00000045102 Poln ENSMUST00000202027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045102 Poln ENSMUST00000202409 ENSMUSP00000144578 TRANSLATION protein_coding - CCDS80262.1 1 848.0 5.0 14.96 0.0 365.4 0.0 -4,-5 0.2334 - 13.286 MINOR ENSMUSG00000045102 Poln ENSMUST00000201251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045102 Poln ENSMUST00000202076 - NO_TRANSLATION retained_intron ENSMUSG00000061259 Tmprss11d ENSMUST00000031175 ENSMUSP00000031175 TRANSLATION protein_coding - CCDS39124.1 1 417.0 5.0 5.75 8.0 308.5 0.0 -3,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000061259 Tmprss11d ENSMUST00000122377 ENSMUSP00000113079 TRANSLATION protein_coding - - 1 279.0 5.0 3.5 0.1 228.4 0.0 0,-4 0.0027 - 7.694 MINOR ENSMUSG00000040013 Fkbp6 ENSMUST00000201791 ENSMUSP00000144460 TRANSLATION protein_coding - CCDS80426.1 1 287.0 0.0 5.75 1.0 64.8 0.0 -4,-7 0.1793 1 10.002 MINOR ENSMUSG00000040013 Fkbp6 ENSMUST00000044972 ENSMUSP00000043193 TRANSLATION protein_coding - CCDS19738.1 1 327.0 0.0 6.75 3.2 64.8 0.0 -4,-7 0.8782 1 12.814 MINOR ENSMUSG00000040013 Fkbp6 ENSMUST00000201534 ENSMUSP00000144471 TRANSLATION protein_coding - CCDS19738.1 1 327.0 0.0 6.75 3.2 64.8 0.0 -4,-7 0.8782 1 12.814 MINOR ENSMUSG00000040013 Fkbp6 ENSMUST00000201784 ENSMUSP00000144381 TRANSLATION protein_coding - CCDS80425.1 1 327.0 0.0 6.75 6.4 64.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000054099 Slc25a40 ENSMUST00000197006 - NO_TRANSLATION retained_intron ENSMUSG00000054099 Slc25a40 ENSMUST00000196727 ENSMUSP00000142511 TRANSLATION nonsense_mediated_decay - - 1 86.0 0.0 0.92 0.0 33.5 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000054099 Slc25a40 ENSMUST00000066921 ENSMUSP00000067611 TRANSLATION protein_coding - CCDS39010.1 1 337.0 0.0 5.575 12.8 207.1 2.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000054099 Slc25a40 ENSMUST00000170496 ENSMUSP00000130630 TRANSLATION protein_coding - CCDS39010.1 1 337.0 0.0 5.575 12.8 207.1 2.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000054099 Slc25a40 ENSMUST00000198792 ENSMUSP00000143045 TRANSLATION protein_coding stop - 2 129.0 0.0 2.45 0.0 77.1 2.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000054099 Slc25a40 ENSMUST00000199817 - NO_TRANSLATION retained_intron ENSMUSG00000054099 Slc25a40 ENSMUST00000198119 - NO_TRANSLATION retained_intron ENSMUSG00000054099 Slc25a40 ENSMUST00000199532 - NO_TRANSLATION retained_intron ENSMUSG00000016520 Lnx2 ENSMUST00000123092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016520 Lnx2 ENSMUST00000016664 ENSMUSP00000016664 TRANSLATION protein_coding - CCDS19875.1 1 687.0 11.0 6.1 16.7 243.3 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000095918 Gm5861 ENSMUST00000171093 ENSMUSP00000132429 TRANSLATION protein_coding start - 1 180.0 0.0 1.306 0.0 81.7 0.0 -4,-7 0.772 - -2.0 PRINCIPAL:5 ENSMUSG00000095918 Gm5861 ENSMUST00000168407 ENSMUSP00000127608 TRANSLATION protein_coding start - 5 154.0 0.0 1.306 0.0 81.7 0.0 -4,-5 0.0537 - -2.0 ALTERNATIVE:2 ENSMUSG00000073117 Gm7347 ENSMUST00000095004 ENSMUSP00000092613 TRANSLATION protein_coding - - 1 267.0 0.0 2.05 0.0 83.8 0.0 -4,-2 0.7703 - 12.0 PRINCIPAL:1 ENSMUSG00000029472 Anapc5 ENSMUST00000200058 - NO_TRANSLATION retained_intron ENSMUSG00000029472 Anapc5 ENSMUST00000200415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029472 Anapc5 ENSMUST00000196753 - NO_TRANSLATION retained_intron ENSMUSG00000029472 Anapc5 ENSMUST00000200219 - NO_TRANSLATION retained_intron ENSMUSG00000029472 Anapc5 ENSMUST00000197331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029472 Anapc5 ENSMUST00000197554 - NO_TRANSLATION retained_intron ENSMUSG00000029472 Anapc5 ENSMUST00000199130 ENSMUSP00000143535 TRANSLATION nonsense_mediated_decay start - 3 68.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029472 Anapc5 ENSMUST00000199025 - NO_TRANSLATION retained_intron ENSMUSG00000029472 Anapc5 ENSMUST00000199191 ENSMUSP00000143078 TRANSLATION protein_coding start/stop - 1 45.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029472 Anapc5 ENSMUST00000200148 ENSMUSP00000143457 TRANSLATION nonsense_mediated_decay start - 5 78.0 0.0 1.5 0.0 52.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029472 Anapc5 ENSMUST00000199406 ENSMUSP00000142341 TRANSLATION protein_coding - CCDS80399.1 1 656.0 0.0 12.465 0.0 107.6 0.0 -4,-7 0.0824 16 6.0 MINOR ENSMUSG00000029472 Anapc5 ENSMUST00000197074 ENSMUSP00000143053 TRANSLATION protein_coding - CCDS80398.1 1 732.0 0.0 16.125 1.1 107.6 0.0 -4,-7 0.466 22 11.388 MINOR ENSMUSG00000029472 Anapc5 ENSMUST00000197719 ENSMUSP00000142579 TRANSLATION protein_coding - CCDS80396.1 1 719.0 0.0 15.795 0.4 107.6 0.0 -4,-7 0.2973 22 10.68 MINOR ENSMUSG00000029472 Anapc5 ENSMUST00000196423 ENSMUSP00000143169 TRANSLATION nonsense_mediated_decay - - 2 407.0 0.0 7.305 0.0 107.6 0.0 -4,-7 0.0168 14 -2.0 MINOR ENSMUSG00000029472 Anapc5 ENSMUST00000200645 ENSMUSP00000142922 TRANSLATION protein_coding - CCDS80397.1 1 727.0 0.0 16.125 1.1 107.6 0.0 -4,-7 0.4616 22 11.388 MINOR ENSMUSG00000029472 Anapc5 ENSMUST00000199926 ENSMUSP00000142981 TRANSLATION nonsense_mediated_decay - - 3 95.0 0.0 1.75 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000029472 Anapc5 ENSMUST00000086216 ENSMUSP00000083393 TRANSLATION protein_coding - CCDS39258.1 1 740.0 0.0 16.455 3.1 107.6 0.0 -4,-7 1.0 22 13.0 PRINCIPAL:1 ENSMUSG00000029472 Anapc5 ENSMUST00000196640 ENSMUSP00000142429 TRANSLATION protein_coding - CCDS80400.1 1 732.0 0.0 16.125 0.4 107.6 0.0 -4,-7 0.3451 22 11.34 MINOR ENSMUSG00000042121 Ssh1 ENSMUST00000162322 - NO_TRANSLATION retained_intron ENSMUSG00000042121 Ssh1 ENSMUST00000077689 ENSMUSP00000076873 TRANSLATION protein_coding - - 1 999.0 7.0 2.7 0.1 170.3 0.0 -4,-2 0.45 16 14.0 ALTERNATIVE:2 ENSMUSG00000042121 Ssh1 ENSMUST00000112298 ENSMUSP00000107917 TRANSLATION protein_coding - - 1 1020.0 7.0 2.7 0.0 170.3 0.0 -4,-7 0.9461 15 14.0 ALTERNATIVE:2 ENSMUSG00000042121 Ssh1 ENSMUST00000159510 ENSMUSP00000125025 TRANSLATION nonsense_mediated_decay - - 5 37.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000042121 Ssh1 ENSMUST00000159592 ENSMUSP00000124312 TRANSLATION protein_coding - CCDS19556.1 1 1042.0 7.0 2.7 0.1 170.3 0.0 -4,-7 0.7683 16 14.0 PRINCIPAL:3 ENSMUSG00000042121 Ssh1 ENSMUST00000162396 ENSMUSP00000125388 TRANSLATION protein_coding start - 3 76.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000039683 Sdk1 ENSMUST00000145908 - NO_TRANSLATION retained_intron ENSMUSG00000039683 Sdk1 ENSMUST00000085774 ENSMUSP00000082928 TRANSLATION protein_coding - CCDS39360.2 1 2193.0 0.0 29.73 0.3 839.1 0.0 -4,-2 1.0 25 12.0 PRINCIPAL:1 ENSMUSG00000039683 Sdk1 ENSMUST00000129831 - NO_TRANSLATION retained_intron ENSMUSG00000039683 Sdk1 ENSMUST00000074546 ENSMUSP00000074133 TRANSLATION protein_coding - - 1 1933.0 0.0 25.73 0.0 771.7 0.0 -4,-5 0.1898 25 1.956 MINOR ENSMUSG00000029234 Tmem165 ENSMUST00000031144 ENSMUSP00000031144 TRANSLATION protein_coding - CCDS19359.1 1 323.0 0.0 0.0 7.2 156.4 6.0 3,-2 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000029234 Tmem165 ENSMUST00000136424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029234 Tmem165 ENSMUST00000130842 ENSMUSP00000114647 TRANSLATION protein_coding stop - 1 90.0 0.0 0.0 0.0 44.9 3.0 -1,-5 0.0016 1 -2.0 MINOR ENSMUSG00000029234 Tmem165 ENSMUST00000138544 - NO_TRANSLATION retained_intron ENSMUSG00000029234 Tmem165 ENSMUST00000153633 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051498 Tlr6 ENSMUST00000201307 ENSMUSP00000143865 TRANSLATION protein_coding stop - 1 102.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051498 Tlr6 ENSMUST00000239485 ENSMUSP00000159286 TRANSLATION protein_coding - CCDS19303.1 - 806.0 0.0 1.8 0.1 156.0 1.0 -4,-7 0.5818 - 12.0 MINOR ENSMUSG00000051498 Tlr6 ENSMUST00000062315 ENSMUSP00000062096 TRANSLATION protein_coding - - 1 795.0 0.0 1.8 7.7 156.0 1.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000041930 Fam222a ENSMUST00000130983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041930 Fam222a ENSMUST00000043650 ENSMUSP00000045724 TRANSLATION protein_coding - CCDS19567.1 1 453.0 0.0 0.0 6.5 131.3 0.0 -4,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000037373 Ctbp1 ENSMUST00000201575 ENSMUSP00000144554 TRANSLATION protein_coding - CCDS80255.1 1 367.0 27.0 6.88 2.0 267.0 0.0 -4,-5 0.112 8 10.54 MINOR ENSMUSG00000037373 Ctbp1 ENSMUST00000201372 ENSMUSP00000143877 TRANSLATION protein_coding stop - 5 180.0 18.0 4.08 0.0 155.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000037373 Ctbp1 ENSMUST00000202135 - NO_TRANSLATION retained_intron ENSMUSG00000037373 Ctbp1 ENSMUST00000201514 - NO_TRANSLATION retained_intron ENSMUSG00000037373 Ctbp1 ENSMUST00000202962 ENSMUSP00000144251 TRANSLATION protein_coding - - 2 337.0 26.0 7.31 0.0 258.9 0.0 -4,-2 0.0028 7 10.532 MINOR ENSMUSG00000037373 Ctbp1 ENSMUST00000201275 ENSMUSP00000144029 TRANSLATION nonsense_mediated_decay - - 3 77.0 0.0 1.5 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000037373 Ctbp1 ENSMUST00000202820 ENSMUSP00000144303 TRANSLATION protein_coding stop - 2 117.0 3.0 3.58 0.0 75.8 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000037373 Ctbp1 ENSMUST00000202190 ENSMUSP00000144596 TRANSLATION protein_coding stop - 2 31.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000037373 Ctbp1 ENSMUST00000202868 ENSMUSP00000144024 TRANSLATION protein_coding - CCDS80256.1 1 429.0 27.0 8.71 21.0 289.7 0.0 -4,-2 1.0 10 18.0 PRINCIPAL:4 ENSMUSG00000037373 Ctbp1 ENSMUST00000200899 ENSMUSP00000144672 TRANSLATION protein_coding stop - 3 85.0 0.0 2.58 0.0 28.7 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000037373 Ctbp1 ENSMUST00000079746 ENSMUSP00000078682 TRANSLATION protein_coding - CCDS19201.1 1 441.0 27.0 8.71 20.1 289.7 0.0 -4,-7 0.9699 10 17.82 ALTERNATIVE:1 ENSMUSG00000037373 Ctbp1 ENSMUST00000202632 - NO_TRANSLATION retained_intron ENSMUSG00000011831 Evi5 ENSMUST00000138111 ENSMUSP00000119196 TRANSLATION protein_coding stop - 1 365.0 0.0 6.23 0.0 184.8 0.0 -4,-2 0.0212 4 -2.0 MINOR ENSMUSG00000011831 Evi5 ENSMUST00000132406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011831 Evi5 ENSMUST00000124590 - NO_TRANSLATION retained_intron ENSMUSG00000011831 Evi5 ENSMUST00000124034 ENSMUSP00000121761 TRANSLATION protein_coding stop - 1 376.0 0.0 6.56 0.0 184.8 0.0 -4,-2 0.04 4 -2.0 MINOR ENSMUSG00000011831 Evi5 ENSMUST00000155955 ENSMUSP00000119758 TRANSLATION protein_coding stop - 5 222.0 0.0 1.73 0.0 36.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000011831 Evi5 ENSMUST00000127579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011831 Evi5 ENSMUST00000141673 - NO_TRANSLATION retained_intron ENSMUSG00000011831 Evi5 ENSMUST00000132482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011831 Evi5 ENSMUST00000155897 - NO_TRANSLATION retained_intron ENSMUSG00000011831 Evi5 ENSMUST00000112642 ENSMUSP00000108261 TRANSLATION protein_coding - CCDS39198.1 1 809.0 0.0 6.89 4.5 184.8 0.0 -4,-1 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000011831 Evi5 ENSMUST00000136677 - NO_TRANSLATION retained_intron ENSMUSG00000011831 Evi5 ENSMUST00000133411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011831 Evi5 ENSMUST00000128723 ENSMUSP00000114845 TRANSLATION protein_coding stop - 5 660.0 0.0 6.89 0.0 184.8 0.0 -4,-2 0.0818 9 -2.0 MINOR ENSMUSG00000099762 Gm21149 ENSMUST00000197995 ENSMUSP00000143356 TRANSLATION protein_coding - - 5 255.0 0.0 2.25 0.0 99.4 0.0 -4,-2 0.7621 - 12.0 PRINCIPAL:1 ENSMUSG00000039959 Hip1 ENSMUST00000200808 ENSMUSP00000144429 TRANSLATION nonsense_mediated_decay start - 3 109.0 0.0 1.0 0.0 26.3 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000039959 Hip1 ENSMUST00000202236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039959 Hip1 ENSMUST00000212301 ENSMUSP00000148842 TRANSLATION protein_coding - - 5 402.0 3.0 3.8 0.0 269.5 0.0 -4,-6 0.0 12 3.0 MINOR ENSMUSG00000039959 Hip1 ENSMUST00000201479 - NO_TRANSLATION retained_intron ENSMUSG00000039959 Hip1 ENSMUST00000201998 ENSMUSP00000144392 TRANSLATION protein_coding stop - 2 192.0 3.0 1.68 0.0 178.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000039959 Hip1 ENSMUST00000060311 ENSMUSP00000059033 TRANSLATION protein_coding - CCDS51663.1 1 1029.0 3.0 12.95 5.7 530.7 0.0 -4,-2 1.0 34 17.0 PRINCIPAL:1 ENSMUSG00000039959 Hip1 ENSMUST00000202643 ENSMUSP00000144086 TRANSLATION protein_coding start - 1 618.0 0.0 8.65 0.0 263.6 0.0 -4,-5 0.0 20 -2.0 MINOR ENSMUSG00000039959 Hip1 ENSMUST00000202044 - NO_TRANSLATION retained_intron ENSMUSG00000039959 Hip1 ENSMUST00000200898 - NO_TRANSLATION retained_intron ENSMUSG00000039959 Hip1 ENSMUST00000202095 - NO_TRANSLATION retained_intron ENSMUSG00000029547 Ints1 ENSMUST00000196864 ENSMUSP00000142362 TRANSLATION protein_coding - - 3 2193.0 0.0 14.0825 10.8 114.4 0.0 -4,-2 0.999 38 11.0 ALTERNATIVE:1 ENSMUSG00000029547 Ints1 ENSMUST00000197187 ENSMUSP00000143274 TRANSLATION protein_coding start - 5 137.0 0.0 2.55 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000029547 Ints1 ENSMUST00000198615 - NO_TRANSLATION retained_intron ENSMUSG00000029547 Ints1 ENSMUST00000072607 ENSMUSP00000072406 TRANSLATION protein_coding - - 5 2193.0 0.0 14.0825 10.8 114.4 0.0 -4,-2 0.999 38 11.0 ALTERNATIVE:1 ENSMUSG00000029547 Ints1 ENSMUST00000196379 - NO_TRANSLATION retained_intron ENSMUSG00000029547 Ints1 ENSMUST00000200393 ENSMUSP00000143789 TRANSLATION protein_coding - - 1 2195.0 0.0 14.0825 10.8 114.4 0.0 -4,-2 1.0 38 11.0 PRINCIPAL:4 ENSMUSG00000029547 Ints1 ENSMUST00000197727 - NO_TRANSLATION retained_intron ENSMUSG00000029547 Ints1 ENSMUST00000197156 - NO_TRANSLATION retained_intron ENSMUSG00000029547 Ints1 ENSMUST00000196319 - NO_TRANSLATION retained_intron ENSMUSG00000029547 Ints1 ENSMUST00000200339 - NO_TRANSLATION retained_intron ENSMUSG00000067438 Hmx1 ENSMUST00000172923 ENSMUSP00000139840 TRANSLATION protein_coding stop - 3 142.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000067438 Hmx1 ENSMUST00000087674 ENSMUSP00000084958 TRANSLATION protein_coding - CCDS19228.1 1 332.0 0.0 0.6 0.0 71.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039315 Clnk ENSMUST00000169819 ENSMUSP00000128473 TRANSLATION protein_coding - CCDS51486.1 1 435.0 0.0 2.75 0.1 54.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000109713 Pvrig ENSMUST00000211088 ENSMUSP00000147735 TRANSLATION protein_coding - - 5 234.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.6049 - 0.0 PRINCIPAL:1 ENSMUSG00000029484 Anxa3 ENSMUST00000199390 - NO_TRANSLATION retained_intron ENSMUSG00000029484 Anxa3 ENSMUST00000197339 - NO_TRANSLATION retained_intron ENSMUSG00000029484 Anxa3 ENSMUST00000198631 ENSMUSP00000143491 TRANSLATION protein_coding - - 1 180.0 8.0 5.0 0.0 184.8 0.0 -4,-6 0.0 13 0.0 MINOR ENSMUSG00000029484 Anxa3 ENSMUST00000031447 ENSMUSP00000031447 TRANSLATION protein_coding - CCDS51568.1 1 323.0 21.0 9.5 25.8 357.9 0.0 -4,-6 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000029484 Anxa3 ENSMUST00000197196 - NO_TRANSLATION retained_intron ENSMUSG00000029484 Anxa3 ENSMUST00000196126 ENSMUSP00000143103 TRANSLATION protein_coding - - 2 32.0 3.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000029484 Anxa3 ENSMUST00000199656 - NO_TRANSLATION retained_intron ENSMUSG00000029484 Anxa3 ENSMUST00000200379 ENSMUSP00000142527 TRANSLATION protein_coding stop - 5 78.0 4.0 2.5 0.0 97.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000029484 Anxa3 ENSMUST00000199330 ENSMUSP00000143615 TRANSLATION protein_coding stop - 3 84.0 4.0 2.5 0.0 84.9 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000029477 Morn3 ENSMUST00000145257 ENSMUSP00000122306 TRANSLATION nonsense_mediated_decay - - 5 114.0 0.0 2.2 0.0 46.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029477 Morn3 ENSMUST00000045843 ENSMUSP00000041714 TRANSLATION protein_coding - CCDS84956.1 1 169.0 0.0 3.2 0.0 80.3 0.0 -4,-5 0.0185 1 5.808 MINOR ENSMUSG00000029477 Morn3 ENSMUST00000031437 ENSMUSP00000031437 TRANSLATION protein_coding - CCDS19659.1 1 241.0 0.0 5.66 15.4 101.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000029477 Morn3 ENSMUST00000129934 ENSMUSP00000122570 TRANSLATION protein_coding start - 5 35.0 0.0 1.16 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029477 Morn3 ENSMUST00000132775 ENSMUSP00000120199 TRANSLATION nonsense_mediated_decay - CCDS84956.1 1 169.0 0.0 3.2 0.0 80.3 0.0 -4,-5 0.0185 1 -2.0 MINOR ENSMUSG00000029477 Morn3 ENSMUST00000137490 ENSMUSP00000117668 TRANSLATION protein_coding start - 5 38.0 0.0 1.16 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029510 Gpc2 ENSMUST00000014089 ENSMUSP00000014089 TRANSLATION protein_coding - - 5 570.0 0.0 5.8 0.0 624.7 0.0 1,-2 0.147 - 9.99 MINOR ENSMUSG00000029510 Gpc2 ENSMUST00000161984 ENSMUSP00000137879 TRANSLATION nonsense_mediated_decay - - 1 342.0 0.0 5.15 0.0 435.8 0.0 1,-2 0.0033 - -2.0 MINOR ENSMUSG00000029510 Gpc2 ENSMUST00000159689 - NO_TRANSLATION retained_intron ENSMUSG00000029510 Gpc2 ENSMUST00000161827 ENSMUSP00000124459 TRANSLATION protein_coding - CCDS19799.1 1 579.0 0.0 5.932 0.0 653.8 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029510 Gpc2 ENSMUST00000159350 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029510 Gpc2 ENSMUST00000162909 - NO_TRANSLATION retained_intron ENSMUSG00000029510 Gpc2 ENSMUST00000161055 - NO_TRANSLATION retained_intron ENSMUSG00000029381 Shroom3 ENSMUST00000168878 ENSMUSP00000130419 TRANSLATION protein_coding - - 1 1849.0 0.0 3.8 0.0 402.5 0.0 -4,-5 0.0888 28 6.0 MINOR ENSMUSG00000029381 Shroom3 ENSMUST00000172849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029381 Shroom3 ENSMUST00000225438 ENSMUSP00000153516 TRANSLATION protein_coding - - - 1899.0 0.0 2.0 0.0 550.6 0.0 -4,-1 0.107 30 6.246 MINOR ENSMUSG00000029381 Shroom3 ENSMUST00000172706 ENSMUSP00000133690 TRANSLATION protein_coding stop - 2 179.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000029381 Shroom3 ENSMUST00000113055 ENSMUSP00000108678 TRANSLATION protein_coding - CCDS39154.1 1 1980.0 0.0 3.8 0.0 586.5 0.0 -4,-5 1.0 29 12.0 PRINCIPAL:1 ENSMUSG00000029381 Shroom3 ENSMUST00000113051 ENSMUSP00000108674 TRANSLATION protein_coding - CCDS39155.1 1 1805.0 0.0 2.0 0.0 550.6 0.0 -4,-7 0.1661 28 6.246 MINOR ENSMUSG00000029381 Shroom3 ENSMUST00000200869 - NO_TRANSLATION retained_intron ENSMUSG00000029381 Shroom3 ENSMUST00000202767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029381 Shroom3 ENSMUST00000172752 - NO_TRANSLATION retained_intron ENSMUSG00000029381 Shroom3 ENSMUST00000201800 - NO_TRANSLATION retained_intron ENSMUSG00000029381 Shroom3 ENSMUST00000113054 ENSMUSP00000108677 TRANSLATION protein_coding - CCDS39155.1 1 1805.0 0.0 2.0 0.0 550.6 0.0 -4,-7 0.1661 28 6.246 MINOR ENSMUSG00000000560 Gabra2 ENSMUST00000198625 ENSMUSP00000143645 TRANSLATION nonsense_mediated_decay - - 5 87.0 0.0 1.75 0.0 0.0 0.0 3,-2 0.0017 - -2.0 MINOR ENSMUSG00000000560 Gabra2 ENSMUST00000197124 - NO_TRANSLATION retained_intron ENSMUSG00000000560 Gabra2 ENSMUST00000197284 ENSMUSP00000142892 TRANSLATION protein_coding - CCDS19327.1 1 451.0 0.0 7.33 14.4 276.5 0.0 3,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000000560 Gabra2 ENSMUST00000199861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000560 Gabra2 ENSMUST00000199012 - NO_TRANSLATION retained_intron ENSMUSG00000000560 Gabra2 ENSMUST00000000572 ENSMUSP00000000572 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 1.0 0.0 0.0 0.0 3,-2 0.0007 - -2.0 MINOR ENSMUSG00000051940 5031410I06Rik ENSMUST00000063524 ENSMUSP00000069697 TRANSLATION protein_coding - CCDS51443.1 1 267.0 0.0 2.05 0.0 83.4 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029120 Ppp2r2c ENSMUST00000138124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029120 Ppp2r2c ENSMUST00000031003 ENSMUSP00000031003 TRANSLATION protein_coding - CCDS19244.1 1 447.0 0.0 8.15 30.9 0.0 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000029120 Ppp2r2c ENSMUST00000201156 ENSMUSP00000144342 TRANSLATION protein_coding - - 5 76.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0018 - 0.0 MINOR ENSMUSG00000036687 Tmem184a ENSMUST00000146780 ENSMUSP00000117714 TRANSLATION protein_coding stop - 3 87.0 0.0 0.0 0.0 0.0 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000036687 Tmem184a ENSMUST00000110832 ENSMUSP00000106456 TRANSLATION protein_coding - CCDS39354.1 1 425.0 0.0 0.0 2.9 311.7 4.0 -4,-7 1.0 3 3.0 PRINCIPAL:2 ENSMUSG00000036687 Tmem184a ENSMUST00000132677 - NO_TRANSLATION retained_intron ENSMUSG00000036687 Tmem184a ENSMUST00000044002 ENSMUSP00000035399 TRANSLATION protein_coding - CCDS51685.1 1 449.0 0.0 0.0 1.1 311.7 4.0 -4,-6 0.3647 3 2.053 ALTERNATIVE:2 ENSMUSG00000036687 Tmem184a ENSMUST00000147328 ENSMUSP00000119412 TRANSLATION protein_coding stop - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000051022 Hs3st1 ENSMUST00000152057 ENSMUSP00000118060 TRANSLATION protein_coding stop - 3 75.0 6.0 0.6 0.0 0.0 0.0 3,-1 0.0023 - -2.0 MINOR ENSMUSG00000051022 Hs3st1 ENSMUST00000137142 ENSMUSP00000114997 TRANSLATION protein_coding stop - 3 176.0 13.0 1.6 0.0 62.7 0.0 3,-1 0.0006 1 -2.0 MINOR ENSMUSG00000051022 Hs3st1 ENSMUST00000117944 ENSMUSP00000113919 TRANSLATION protein_coding - CCDS19257.1 1 311.0 22.0 2.6 9.8 135.1 0.0 3,-1 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000051022 Hs3st1 ENSMUST00000053116 ENSMUSP00000051055 TRANSLATION protein_coding - CCDS19257.1 1 311.0 22.0 2.6 9.8 135.1 0.0 3,-1 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000081683 Fzd10 ENSMUST00000117102 ENSMUSP00000114114 TRANSLATION protein_coding - CCDS51652.1 - 582.0 0.0 0.4 7.9 569.1 0.0 1,-3 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000066867 Oas1e ENSMUST00000201172 ENSMUSP00000144529 TRANSLATION protein_coding - CCDS84950.1 1 386.0 12.0 4.814 0.0 239.5 0.0 -4,-5 0.2055 1 14.0 ALTERNATIVE:2 ENSMUSG00000066867 Oas1e ENSMUST00000100785 ENSMUSP00000098348 TRANSLATION protein_coding - CCDS39243.1 1 356.0 12.0 4.814 0.0 240.7 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000066867 Oas1e ENSMUST00000200786 ENSMUSP00000144442 TRANSLATION nonsense_mediated_decay - - 3 106.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073102 Drc1 ENSMUST00000198023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073102 Drc1 ENSMUST00000101448 ENSMUSP00000098992 TRANSLATION protein_coding - CCDS84857.1 1 753.0 0.0 0.0 0.4 184.0 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000073102 Drc1 ENSMUST00000200183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073102 Drc1 ENSMUST00000200399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048163 Selplg ENSMUST00000201194 ENSMUSP00000144450 TRANSLATION protein_coding start - 2 63.0 0.0 1.08 0.0 0.0 0.0 4,-1 0.0834 - -2.0 MINOR ENSMUSG00000048163 Selplg ENSMUST00000100874 ENSMUSP00000098436 TRANSLATION protein_coding - CCDS51621.1 1 417.0 0.0 1.38 0.1 0.0 1.0 2,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048163 Selplg ENSMUST00000198891 - NO_TRANSLATION retained_intron ENSMUSG00000048163 Selplg ENSMUST00000201931 ENSMUSP00000143912 TRANSLATION protein_coding start - 2 173.0 0.0 1.05 0.0 0.0 1.0 -4,-5 0.0237 - -2.0 MINOR ENSMUSG00000048163 Selplg ENSMUST00000199109 ENSMUSP00000143052 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0637 - -2.0 MINOR ENSMUSG00000048163 Selplg ENSMUST00000202555 ENSMUSP00000144186 TRANSLATION protein_coding start - 3 72.0 0.0 1.05 0.0 0.0 1.0 -4,-5 0.0234 - -2.0 MINOR ENSMUSG00000034573 Ptpn13 ENSMUST00000200581 - NO_TRANSLATION retained_intron ENSMUSG00000034573 Ptpn13 ENSMUST00000196014 ENSMUSP00000143571 TRANSLATION nonsense_mediated_decay - - 1 247.0 0.0 2.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034573 Ptpn13 ENSMUST00000048957 ENSMUSP00000048119 TRANSLATION protein_coding - CCDS39186.1 2 2451.0 4.0 17.182 0.1 940.6 0.0 -4,-5 1.0 45 16.0 PRINCIPAL:1 ENSMUSG00000034573 Ptpn13 ENSMUST00000199412 - NO_TRANSLATION retained_intron ENSMUSG00000034573 Ptpn13 ENSMUST00000196800 - NO_TRANSLATION retained_intron ENSMUSG00000059325 Hopx ENSMUST00000081964 ENSMUSP00000080630 TRANSLATION protein_coding - CCDS39120.1 1 73.0 0.0 1.75 18.0 40.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000059325 Hopx ENSMUST00000120827 ENSMUSP00000113295 TRANSLATION protein_coding - CCDS39120.1 1 73.0 0.0 1.75 18.0 40.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000059325 Hopx ENSMUST00000113453 ENSMUSP00000109080 TRANSLATION protein_coding - CCDS39120.1 1 73.0 0.0 1.75 18.0 40.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000058427 Cxcl2 ENSMUST00000200681 ENSMUSP00000144334 TRANSLATION protein_coding - - 1 96.0 0.0 1.9 0.1 52.4 0.0 3,-2 0.8077 - 8.0 PRINCIPAL:4 ENSMUSG00000058427 Cxcl2 ENSMUST00000075433 ENSMUSP00000074885 TRANSLATION protein_coding - CCDS39144.1 1 100.0 0.0 1.9 0.4 52.4 0.0 3,-2 0.5645 - 8.0 ALTERNATIVE:2 ENSMUSG00000058427 Cxcl2 ENSMUST00000202317 - NO_TRANSLATION retained_intron ENSMUSG00000058427 Cxcl2 ENSMUST00000200919 - NO_TRANSLATION retained_intron ENSMUSG00000029084 Cd38 ENSMUST00000196600 - NO_TRANSLATION retained_intron ENSMUSG00000029084 Cd38 ENSMUST00000030964 ENSMUSP00000030964 TRANSLATION protein_coding - CCDS19265.1 1 304.0 7.0 6.8 5.2 337.0 0.0 -4,-7 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000050022 Amz1 ENSMUST00000126975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050022 Amz1 ENSMUST00000120630 ENSMUSP00000113911 TRANSLATION protein_coding - CCDS19824.1 1 502.0 7.0 0.0 5.8 0.0 0.0 -4,-6 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000050022 Amz1 ENSMUST00000155644 - NO_TRANSLATION retained_intron ENSMUSG00000050022 Amz1 ENSMUST00000176035 ENSMUSP00000135504 TRANSLATION nonsense_mediated_decay start - 2 202.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0271 - -2.0 MINOR ENSMUSG00000050022 Amz1 ENSMUST00000156006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050022 Amz1 ENSMUST00000060918 ENSMUSP00000053110 TRANSLATION protein_coding - CCDS19824.1 1 502.0 7.0 0.0 5.8 0.0 0.0 -4,-6 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000050022 Amz1 ENSMUST00000177057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029282 Amtn ENSMUST00000073363 ENSMUSP00000073081 TRANSLATION protein_coding - CCDS51538.1 1 213.0 0.0 0.0 5.3 309.9 0.0 4,-1 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000066861 Oas1g ENSMUST00000161809 - NO_TRANSLATION retained_intron ENSMUSG00000066861 Oas1g ENSMUST00000086368 ENSMUSP00000083555 TRANSLATION protein_coding - CCDS39245.1 1 367.0 9.0 5.0 0.4 326.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000066861 Oas1g ENSMUST00000162096 ENSMUSP00000124597 TRANSLATION nonsense_mediated_decay - - 1 234.0 6.0 3.0 0.0 118.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029727 Cyp3a13 ENSMUST00000031741 ENSMUSP00000031741 TRANSLATION protein_coding - CCDS19781.1 1 503.0 30.0 11.7 13.0 432.0 0.0 0,-3 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000050050 Ccdc158 ENSMUST00000150359 ENSMUSP00000123259 TRANSLATION protein_coding - - 1 354.0 0.0 0.0 0.0 723.3 0.0 -4,-5 0.0336 - 0.0 MINOR ENSMUSG00000050050 Ccdc158 ENSMUST00000212060 ENSMUSP00000148784 TRANSLATION protein_coding start/stop - 3 197.0 0.0 0.0 0.0 428.7 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000050050 Ccdc158 ENSMUST00000136004 - NO_TRANSLATION retained_intron ENSMUSG00000050050 Ccdc158 ENSMUST00000060930 ENSMUSP00000063050 TRANSLATION protein_coding - CCDS19434.1 1 1109.0 0.0 0.0 5.9 2320.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000050050 Ccdc158 ENSMUST00000151180 ENSMUSP00000117894 TRANSLATION protein_coding - - 1 354.0 0.0 0.0 0.0 723.3 0.0 -4,-5 0.0336 - 0.0 MINOR ENSMUSG00000046607 Hrk ENSMUST00000054836 ENSMUSP00000057532 TRANSLATION protein_coding - CCDS39236.1 1 92.0 0.0 0.4 0.4 184.3 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046607 Hrk ENSMUST00000184679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061882 Ccdc62 ENSMUST00000094320 ENSMUSP00000091878 TRANSLATION protein_coding - CCDS51646.1 5 701.0 0.0 0.0 0.1 0.0 0.0 -4,-7 0.9262 - 0.0 PRINCIPAL:1 ENSMUSG00000061882 Ccdc62 ENSMUST00000166983 - NO_TRANSLATION retained_intron ENSMUSG00000061882 Ccdc62 ENSMUST00000249271 - NO_TRANSLATION retained_intron ENSMUSG00000061882 Ccdc62 ENSMUST00000197673 - NO_TRANSLATION retained_intron ENSMUSG00000061882 Ccdc62 ENSMUST00000169898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061882 Ccdc62 ENSMUST00000171881 - NO_TRANSLATION retained_intron ENSMUSG00000029577 Ube3b ENSMUST00000130169 ENSMUSP00000138723 TRANSLATION nonsense_mediated_decay - - 1 243.0 0.0 0.0 0.0 24.6 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000029577 Ube3b ENSMUST00000074002 ENSMUSP00000073652 TRANSLATION protein_coding - CCDS19564.1 1 1070.0 0.0 5.66 34.2 334.6 0.0 -4,-1 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000029577 Ube3b ENSMUST00000196651 ENSMUSP00000143455 TRANSLATION nonsense_mediated_decay start - 5 178.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000029577 Ube3b ENSMUST00000150630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029577 Ube3b ENSMUST00000151809 ENSMUSP00000142943 TRANSLATION nonsense_mediated_decay - - 3 63.0 0.0 0.0 0.0 24.6 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000056004 Elapor2 ENSMUST00000115348 ENSMUSP00000111005 TRANSLATION protein_coding - - 1 236.0 0.0 0.0 0.0 0.0 0.0 -2,1 0.036 4 0.0 MINOR ENSMUSG00000056004 Elapor2 ENSMUST00000152095 ENSMUSP00000116440 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 0.0 0.0 -2,1 0.0257 - -2.0 MINOR ENSMUSG00000056004 Elapor2 ENSMUST00000142202 - NO_TRANSLATION retained_intron ENSMUSG00000056004 Elapor2 ENSMUST00000069538 ENSMUSP00000069165 TRANSLATION protein_coding - CCDS19089.1 1 1028.0 0.0 2.0 3.5 0.0 1.0 -2,1 1.0 18 7.0 PRINCIPAL:2 ENSMUSG00000056004 Elapor2 ENSMUST00000134991 ENSMUSP00000121757 TRANSLATION protein_coding - - 1 1014.0 0.0 2.0 1.0 0.0 1.0 -2,1 0.4113 18 6.0 ALTERNATIVE:2 ENSMUSG00000056004 Elapor2 ENSMUST00000155764 ENSMUSP00000120849 TRANSLATION nonsense_mediated_decay - - 1 580.0 0.0 0.0 0.3 0.0 0.0 -2,1 0.1332 12 -2.0 MINOR ENSMUSG00000056004 Elapor2 ENSMUST00000131626 - NO_TRANSLATION retained_intron ENSMUSG00000056004 Elapor2 ENSMUST00000154662 ENSMUSP00000116026 TRANSLATION nonsense_mediated_decay - - 1 222.0 0.0 0.0 0.0 0.0 0.0 -2,1 0.0339 4 -2.0 MINOR ENSMUSG00000075703 Selenoi ENSMUST00000132404 ENSMUSP00000117343 TRANSLATION nonsense_mediated_decay - - 1 198.0 0.0 3.75 0.0 48.1 7.0 -4,-6 0.004 1 -2.0 MINOR ENSMUSG00000075703 Selenoi ENSMUST00000197299 - NO_TRANSLATION retained_intron ENSMUSG00000075703 Selenoi ENSMUST00000151468 - NO_TRANSLATION retained_intron ENSMUSG00000075703 Selenoi ENSMUST00000151795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075703 Selenoi ENSMUST00000145858 ENSMUSP00000114389 TRANSLATION nonsense_mediated_decay - - 1 66.0 0.0 1.25 0.0 0.0 1.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000075703 Selenoi ENSMUST00000145167 ENSMUSP00000118368 TRANSLATION protein_coding - CCDS51451.1 1 398.0 0.0 8.75 9.2 59.2 13.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000075703 Selenoi ENSMUST00000198788 - NO_TRANSLATION retained_intron ENSMUSG00000075703 Selenoi ENSMUST00000138001 - NO_TRANSLATION retained_intron ENSMUSG00000033294 Noc4l ENSMUST00000199795 - NO_TRANSLATION retained_intron ENSMUSG00000033294 Noc4l ENSMUST00000150100 - NO_TRANSLATION retained_intron ENSMUSG00000033294 Noc4l ENSMUST00000124612 - NO_TRANSLATION retained_intron ENSMUSG00000033294 Noc4l ENSMUST00000042147 ENSMUSP00000038263 TRANSLATION protein_coding - CCDS19527.1 1 516.0 0.0 12.93 5.0 136.7 0.0 -4,-2 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000033294 Noc4l ENSMUST00000145712 - NO_TRANSLATION retained_intron ENSMUSG00000033294 Noc4l ENSMUST00000123380 - NO_TRANSLATION retained_intron ENSMUSG00000029521 Chek2 ENSMUST00000198373 ENSMUSP00000142506 TRANSLATION protein_coding stop - 3 42.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029521 Chek2 ENSMUST00000200172 ENSMUSP00000142475 TRANSLATION protein_coding stop - 2 40.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000029521 Chek2 ENSMUST00000066160 ENSMUSP00000066679 TRANSLATION protein_coding - CCDS19533.1 1 546.0 18.0 11.605 0.1 301.5 0.0 -4,-7 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000029521 Chek2 ENSMUST00000200630 - NO_TRANSLATION retained_intron ENSMUSG00000029521 Chek2 ENSMUST00000199937 ENSMUSP00000143558 TRANSLATION nonsense_mediated_decay - - 1 207.0 0.0 2.8 0.0 48.2 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029521 Chek2 ENSMUST00000196650 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037339 Fam53a ENSMUST00000137705 ENSMUSP00000121667 TRANSLATION nonsense_mediated_decay - - 5 54.0 0.0 0.0 0.0 51.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037339 Fam53a ENSMUST00000065162 ENSMUSP00000069521 TRANSLATION protein_coding - - 1 321.0 0.0 0.0 0.0 368.9 0.0 -4,-5 0.7618 2 2.0 PRINCIPAL:2 ENSMUSG00000037339 Fam53a ENSMUST00000140043 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037339 Fam53a ENSMUST00000150033 ENSMUSP00000117350 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 0.0 0.0 51.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037339 Fam53a ENSMUST00000155980 ENSMUSP00000120786 TRANSLATION protein_coding stop - 5 35.0 0.0 0.0 0.0 37.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037339 Fam53a ENSMUST00000153696 ENSMUSP00000118139 TRANSLATION protein_coding stop - 1 59.0 0.0 0.0 0.0 49.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037339 Fam53a ENSMUST00000065119 ENSMUSP00000070770 TRANSLATION protein_coding - CCDS19203.1 1 402.0 0.0 0.0 0.4 368.9 0.0 -4,-5 0.2767 3 2.0 ALTERNATIVE:2 ENSMUSG00000037339 Fam53a ENSMUST00000045329 ENSMUSP00000045539 TRANSLATION protein_coding - CCDS19203.1 1 402.0 0.0 0.0 0.4 368.9 0.0 -4,-5 0.2767 3 2.0 ALTERNATIVE:2 ENSMUSG00000029437 Il31 ENSMUST00000031389 ENSMUSP00000031389 TRANSLATION protein_coding - CCDS51645.1 1 163.0 0.0 1.464 0.0 168.3 0.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029437 Il31 ENSMUST00000199227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029437 Il31 ENSMUST00000198463 ENSMUSP00000142507 TRANSLATION protein_coding start - 3 179.0 0.0 1.464 0.0 168.3 0.0 -2,-5 0.0766 - -2.0 MINOR ENSMUSG00000029437 Il31 ENSMUST00000198901 ENSMUSP00000143125 TRANSLATION protein_coding - - 1 100.0 0.0 1.0 0.0 122.1 0.0 -4,-5 0.0 - 7.326 MINOR ENSMUSG00000094043 Pramel49 ENSMUST00000086950 ENSMUSP00000084169 TRANSLATION protein_coding - - 5 481.0 2.0 2.3 0.4 0.0 0.0 -4,-7 0.649 - 8.0 PRINCIPAL:1 ENSMUSG00000060708 Bloc1s4 ENSMUST00000071949 ENSMUSP00000071840 TRANSLATION protein_coding - CCDS19241.1 - 215.0 0.0 0.6 4.5 0.0 0.0 -4,-5 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000029158 Yipf7 ENSMUST00000031045 ENSMUSP00000031045 TRANSLATION protein_coding - CCDS19321.1 1 254.0 0.0 3.25 29.3 42.1 4.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029158 Yipf7 ENSMUST00000202423 ENSMUSP00000144444 TRANSLATION protein_coding stop - 3 108.0 0.0 1.25 0.0 0.0 1.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000106677 Ugt2a1 ENSMUST00000147854 ENSMUSP00000114583 TRANSLATION protein_coding - CCDS39129.1 1 528.0 15.0 6.0 2.1 776.9 0.0 1,-2 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000106445 Gm21190 ENSMUST00000196384 ENSMUSP00000143589 TRANSLATION protein_coding - CCDS80210.1 1 266.0 0.0 2.25 0.0 99.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000028945 Rheb ENSMUST00000146310 - NO_TRANSLATION retained_intron ENSMUSG00000028945 Rheb ENSMUST00000154523 - NO_TRANSLATION retained_intron ENSMUSG00000028945 Rheb ENSMUST00000030787 ENSMUSP00000030787 TRANSLATION protein_coding - CCDS39032.1 1 184.0 19.0 5.5 34.9 159.1 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000028945 Rheb ENSMUST00000196039 - NO_TRANSLATION retained_intron ENSMUSG00000033805 Ephx4 ENSMUST00000161452 ENSMUSP00000124661 TRANSLATION protein_coding stop - 2 93.0 1.0 2.16 0.0 75.2 0.0 -4,-7 0.0003 1 -2.0 MINOR ENSMUSG00000033805 Ephx4 ENSMUST00000159968 ENSMUSP00000125261 TRANSLATION protein_coding stop - 3 142.0 1.0 3.615 0.0 78.7 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000033805 Ephx4 ENSMUST00000049146 ENSMUSP00000043764 TRANSLATION protein_coding - CCDS19501.1 2 359.0 3.0 6.84 2.3 88.7 0.0 -1,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000033805 Ephx4 ENSMUST00000161246 ENSMUSP00000123962 TRANSLATION protein_coding stop - 3 73.0 0.0 1.66 0.0 52.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000045078 Rnf216 ENSMUST00000199044 - NO_TRANSLATION retained_intron ENSMUSG00000045078 Rnf216 ENSMUST00000198179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045078 Rnf216 ENSMUST00000198190 - NO_TRANSLATION retained_intron ENSMUSG00000045078 Rnf216 ENSMUST00000197217 - NO_TRANSLATION retained_intron ENSMUSG00000045078 Rnf216 ENSMUST00000200430 ENSMUSP00000142355 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0237 - -2.0 MINOR ENSMUSG00000045078 Rnf216 ENSMUST00000200607 ENSMUSP00000143705 TRANSLATION protein_coding - CCDS57400.1 1 910.0 20.0 1.3885 0.4 0.0 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:2 ENSMUSG00000045078 Rnf216 ENSMUST00000053498 ENSMUSP00000052563 TRANSLATION protein_coding - CCDS80455.1 1 853.0 20.0 1.3885 0.4 0.0 0.0 -4,-5 0.3642 9 12.0 ALTERNATIVE:2 ENSMUSG00000045078 Rnf216 ENSMUST00000197296 ENSMUSP00000143242 TRANSLATION nonsense_mediated_decay - - 5 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0212 - -2.0 MINOR ENSMUSG00000045078 Rnf216 ENSMUST00000200002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004951 Hspb1 ENSMUST00000111155 ENSMUSP00000106785 TRANSLATION protein_coding - - 1 147.0 0.0 1.35 0.0 46.5 0.0 -4,-2 0.0 13 6.768 MINOR ENSMUSG00000004951 Hspb1 ENSMUST00000005077 ENSMUSP00000005077 TRANSLATION protein_coding - CCDS39320.1 1 209.0 0.0 2.35 6.0 84.0 0.0 -4,-2 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000051391 Ywhag ENSMUST00000129581 - NO_TRANSLATION retained_intron ENSMUSG00000051391 Ywhag ENSMUST00000198270 ENSMUSP00000143631 TRANSLATION protein_coding - CCDS19748.1 5 247.0 0.0 1.75 36.9 354.5 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000051391 Ywhag ENSMUST00000126639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051391 Ywhag ENSMUST00000055808 ENSMUSP00000051223 TRANSLATION protein_coding - CCDS19748.1 1 247.0 0.0 1.75 36.9 354.5 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000051391 Ywhag ENSMUST00000126192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044968 Napepld ENSMUST00000060899 ENSMUSP00000054458 TRANSLATION protein_coding - CCDS19105.1 1 396.0 5.0 3.8 7.3 0.0 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000044968 Napepld ENSMUST00000115217 ENSMUSP00000110872 TRANSLATION protein_coding - CCDS19105.1 1 396.0 5.0 3.8 7.3 0.0 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000036817 Sun1 ENSMUST00000146715 ENSMUSP00000117679 TRANSLATION protein_coding stop - 5 160.0 0.0 0.83 0.0 139.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000143562 ENSMUSP00000116364 TRANSLATION protein_coding stop - 5 158.0 0.0 0.83 0.0 134.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000078690 ENSMUSP00000077756 TRANSLATION protein_coding - CCDS57396.1 5 849.0 4.0 7.53 1.0 474.9 3.0 -4,-5 0.4436 17 15.646 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000127045 ENSMUSP00000123211 TRANSLATION protein_coding stop - 3 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000110882 ENSMUSP00000106506 TRANSLATION protein_coding - CCDS57398.1 5 757.0 4.0 7.53 1.1 480.8 3.0 -4,-5 1.0 16 17.0 PRINCIPAL:1 ENSMUSG00000036817 Sun1 ENSMUST00000126108 - NO_TRANSLATION retained_intron ENSMUSG00000036817 Sun1 ENSMUST00000110884 ENSMUSP00000106508 TRANSLATION protein_coding - CCDS57395.1 1 876.0 4.0 7.53 0.0 473.3 3.0 -4,-5 0.3357 17 15.55 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000123414 - NO_TRANSLATION retained_intron ENSMUSG00000036817 Sun1 ENSMUST00000135720 ENSMUSP00000122785 TRANSLATION protein_coding start/stop - 2 197.0 4.0 0.83 0.0 189.6 0.0 -4,0 0.0007 5 -2.0 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000153469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036817 Sun1 ENSMUST00000129079 ENSMUSP00000119582 TRANSLATION protein_coding stop - 3 131.0 0.0 0.0 0.0 62.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000128817 ENSMUSP00000119587 TRANSLATION protein_coding start/stop - 5 258.0 0.0 2.45 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000135926 ENSMUSP00000114488 TRANSLATION protein_coding start/stop - 5 256.0 4.0 0.0 0.0 133.7 3.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000110883 ENSMUSP00000106507 TRANSLATION protein_coding - CCDS57397.1 1 790.0 4.0 7.53 1.0 475.4 3.0 -4,-5 0.3636 16 15.676 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000136311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036817 Sun1 ENSMUST00000127310 ENSMUSP00000114514 TRANSLATION nonsense_mediated_decay start - 3 117.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000058716 ENSMUSP00000056655 TRANSLATION protein_coding - CCDS19804.1 1 913.0 4.0 7.53 0.4 472.6 3.0 -4,-5 0.3358 18 15.508 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000100517 ENSMUSP00000098086 TRANSLATION protein_coding - - 1 239.0 4.0 0.83 0.0 238.3 0.0 -4,-5 0.0 6 4.0 MINOR ENSMUSG00000036817 Sun1 ENSMUST00000142473 - NO_TRANSLATION retained_intron ENSMUSG00000036817 Sun1 ENSMUST00000148772 ENSMUSP00000114869 TRANSLATION protein_coding stop - 3 175.0 0.0 0.0 0.0 77.6 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000048450 Msx1 ENSMUST00000183013 - NO_TRANSLATION retained_intron ENSMUSG00000048450 Msx1 ENSMUST00000063116 ENSMUSP00000058354 TRANSLATION protein_coding - CCDS19249.1 1 303.0 0.0 0.8 5.2 74.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035187 Nkx6-1 ENSMUST00000044125 ENSMUSP00000042716 TRANSLATION protein_coding - CCDS19471.1 1 365.0 0.0 1.6 7.2 73.7 0.0 -3,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029594 Rbm19 ENSMUST00000201527 - NO_TRANSLATION retained_intron ENSMUSG00000029594 Rbm19 ENSMUST00000201075 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029594 Rbm19 ENSMUST00000202788 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029594 Rbm19 ENSMUST00000202213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029594 Rbm19 ENSMUST00000201792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029594 Rbm19 ENSMUST00000202388 - NO_TRANSLATION retained_intron ENSMUSG00000029594 Rbm19 ENSMUST00000201105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029594 Rbm19 ENSMUST00000202777 ENSMUSP00000144339 TRANSLATION nonsense_mediated_decay - - 1 870.0 0.0 12.375 0.0 233.8 0.0 -4,-7 0.0135 10 -2.0 MINOR ENSMUSG00000029594 Rbm19 ENSMUST00000031590 ENSMUSP00000031590 TRANSLATION protein_coding - CCDS19616.1 1 952.0 0.0 14.04 0.1 266.4 0.0 -4,-7 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000029594 Rbm19 ENSMUST00000200841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074011 Pramel41 ENSMUST00000202916 ENSMUSP00000144247 TRANSLATION protein_coding - - 5 481.0 2.0 2.1 0.4 0.0 0.0 -4,-6 0.6423 - 8.0 PRINCIPAL:1 ENSMUSG00000019054 Fis1 ENSMUST00000111097 ENSMUSP00000106726 TRANSLATION protein_coding - CCDS84977.1 2 102.0 0.0 2.882 0.0 86.6 1.0 -4,-5 0.0092 2 5.862 MINOR ENSMUSG00000019054 Fis1 ENSMUST00000152658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019054 Fis1 ENSMUST00000019198 ENSMUSP00000019198 TRANSLATION protein_coding - CCDS19757.1 1 152.0 0.0 4.25 24.0 143.3 1.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000019054 Fis1 ENSMUST00000147557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019054 Fis1 ENSMUST00000138610 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019054 Fis1 ENSMUST00000111094 ENSMUSP00000106723 TRANSLATION protein_coding - CCDS51669.1 2 145.0 0.0 3.915 0.1 143.3 1.0 -4,-6 0.0826 6 11.328 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000201836 ENSMUSP00000144004 TRANSLATION nonsense_mediated_decay start - 3 44.0 0.0 0.125 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000130461 ENSMUSP00000118681 TRANSLATION protein_coding start/stop - 5 206.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000125574 ENSMUSP00000122173 TRANSLATION protein_coding stop - 3 137.0 0.0 3.0 0.0 45.5 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000202927 ENSMUSP00000144461 TRANSLATION protein_coding stop - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000049780 ENSMUSP00000052807 TRANSLATION protein_coding - CCDS19197.1 1 1085.0 0.0 13.305 0.0 381.2 0.0 -4,-6 0.0753 17 1.334 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000137169 ENSMUSP00000121089 TRANSLATION protein_coding start - 5 976.0 0.0 5.7775 0.0 36.7 0.0 -4,0 0.0066 16 -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000238200 ENSMUSP00000158651 TRANSLATION nonsense_mediated_decay start - - 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0053 - -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000087897 ENSMUSP00000085207 TRANSLATION protein_coding - CCDS19196.1 1 1530.0 0.0 16.185 2.2 417.9 0.0 -4,-6 0.435 19 5.015 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000118698 ENSMUSP00000112906 TRANSLATION protein_coding stop - 5 205.0 0.0 5.08 0.0 157.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000124780 ENSMUSP00000120120 TRANSLATION nonsense_mediated_decay start - 5 657.0 0.0 4.98 0.0 0.0 0.0 -4,-2 0.0005 9 -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000150130 ENSMUSP00000116704 TRANSLATION protein_coding stop - 2 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000149350 ENSMUSP00000122461 TRANSLATION protein_coding stop - 5 161.0 0.0 3.75 0.0 73.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000119705 ENSMUSP00000113862 TRANSLATION protein_coding - CCDS51463.1 1 1591.0 0.0 17.8525 10.6 417.9 0.0 -4,-6 1.0 24 10.796 PRINCIPAL:4 ENSMUSG00000037426 Depdc5 ENSMUST00000120902 ENSMUSP00000113980 TRANSLATION protein_coding - - 5 1569.0 0.0 17.8525 11.3 417.9 0.0 -4,-6 0.8841 24 11.0 ALTERNATIVE:1 ENSMUSG00000037426 Depdc5 ENSMUST00000195980 ENSMUSP00000143228 TRANSLATION nonsense_mediated_decay - - 1 153.0 0.0 3.0 0.0 47.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000037426 Depdc5 ENSMUST00000139098 - NO_TRANSLATION retained_intron ENSMUSG00000037426 Depdc5 ENSMUST00000201802 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037426 Depdc5 ENSMUST00000139463 - NO_TRANSLATION retained_intron ENSMUSG00000037426 Depdc5 ENSMUST00000141812 - NO_TRANSLATION retained_intron ENSMUSG00000037426 Depdc5 ENSMUST00000127560 - NO_TRANSLATION retained_intron ENSMUSG00000029526 1700123K08Rik ENSMUST00000199968 - NO_TRANSLATION retained_intron ENSMUSG00000029526 1700123K08Rik ENSMUST00000031501 ENSMUSP00000031501 TRANSLATION protein_coding - CCDS51680.1 1 295.0 0.0 2.5 0.0 28.8 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029526 1700123K08Rik ENSMUST00000198778 - NO_TRANSLATION retained_intron ENSMUSG00000029613 Eif2ak1 ENSMUST00000100487 ENSMUSP00000098056 TRANSLATION protein_coding - CCDS84994.1 1 619.0 16.0 3.07 0.8 159.3 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000029613 Eif2ak1 ENSMUST00000154767 - NO_TRANSLATION retained_intron ENSMUSG00000029613 Eif2ak1 ENSMUST00000140013 - NO_TRANSLATION retained_intron ENSMUSG00000015882 Lcorl ENSMUST00000156295 - NO_TRANSLATION retained_intron ENSMUSG00000015882 Lcorl ENSMUST00000238522 ENSMUSP00000158672 TRANSLATION protein_coding - - - 1851.0 2.0 0.0 0.0 530.0 0.0 -1,1 0.6942 2 8.0 PRINCIPAL:1 ENSMUSG00000015882 Lcorl ENSMUST00000087164 ENSMUSP00000084408 TRANSLATION protein_coding - CCDS19278.1 1 517.0 2.0 0.0 1.1 83.2 0.0 -4,-5 0.1296 5 2.032 MINOR ENSMUSG00000015882 Lcorl ENSMUST00000121573 ENSMUSP00000112416 TRANSLATION protein_coding - - 1 232.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0015 1 2.0 MINOR ENSMUSG00000015882 Lcorl ENSMUST00000045586 ENSMUSP00000042677 TRANSLATION protein_coding - CCDS19277.1 1 315.0 2.0 0.0 12.7 0.0 0.0 -1,1 1.0 2 5.868 MINOR ENSMUSG00000015882 Lcorl ENSMUST00000186633 ENSMUSP00000141174 TRANSLATION protein_coding start/stop - 3 117.0 2.0 0.0 0.0 0.0 0.0 -1,3 0.0024 2 -2.0 MINOR ENSMUSG00000015882 Lcorl ENSMUST00000187615 ENSMUSP00000139466 TRANSLATION nonsense_mediated_decay start - 2 49.0 0.0 0.0 0.0 0.0 0.0 -1,3 0.0006 1 -2.0 MINOR ENSMUSG00000015882 Lcorl ENSMUST00000067997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015882 Lcorl ENSMUST00000190036 ENSMUSP00000140503 TRANSLATION protein_coding start - 1 220.0 2.0 0.0 0.0 0.0 0.0 -2,2 0.0028 1 -2.0 MINOR ENSMUSG00000015882 Lcorl ENSMUST00000189859 ENSMUSP00000139996 TRANSLATION protein_coding start/stop - 3 128.0 2.0 0.0 0.0 0.0 0.0 -2,2 0.0024 1 -2.0 MINOR ENSMUSG00000015882 Lcorl ENSMUST00000016026 ENSMUSP00000016026 TRANSLATION protein_coding - CCDS51499.1 1 600.0 2.0 0.0 13.1 83.2 0.0 -1,1 0.9981 6 6.0 MINOR ENSMUSG00000015882 Lcorl ENSMUST00000200142 - NO_TRANSLATION retained_intron ENSMUSG00000047182 Irs3 ENSMUST00000196511 ENSMUSP00000142730 TRANSLATION protein_coding - - 1 362.0 0.0 0.518 0.0 89.1 0.0 -4,-5 0.7926 3 6.0 PRINCIPAL:2 ENSMUSG00000047182 Irs3 ENSMUST00000057314 ENSMUSP00000060844 TRANSLATION protein_coding - CCDS19773.1 1 495.0 0.0 0.518 0.4 89.1 0.0 -4,-5 0.4182 3 6.0 ALTERNATIVE:2 ENSMUSG00000023328 Ache ENSMUST00000141123 ENSMUSP00000123295 TRANSLATION protein_coding stop - 1 40.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000023328 Ache ENSMUST00000138591 ENSMUSP00000121378 TRANSLATION protein_coding stop - 1 40.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000023328 Ache ENSMUST00000125195 ENSMUSP00000119813 TRANSLATION protein_coding stop - 1 40.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000023328 Ache ENSMUST00000137126 ENSMUSP00000123248 TRANSLATION protein_coding stop - 1 40.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000023328 Ache ENSMUST00000132191 ENSMUSP00000117452 TRANSLATION protein_coding stop - 1 40.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000023328 Ache ENSMUST00000150983 - NO_TRANSLATION retained_intron ENSMUSG00000023328 Ache ENSMUST00000085934 ENSMUSP00000083097 TRANSLATION protein_coding - CCDS19763.1 1 614.0 6.0 5.4 8.3 651.4 0.0 3,-2 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000023328 Ache ENSMUST00000024099 ENSMUSP00000024099 TRANSLATION protein_coding - CCDS19763.1 1 614.0 6.0 5.4 8.3 651.4 0.0 3,-2 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000023328 Ache ENSMUST00000196208 ENSMUSP00000142427 TRANSLATION protein_coding - - 5 526.0 5.0 4.4 2.2 580.4 0.0 3,-2 0.0904 5 11.232 MINOR ENSMUSG00000029716 Tfr2 ENSMUST00000200190 - NO_TRANSLATION retained_intron ENSMUSG00000029716 Tfr2 ENSMUST00000196450 - NO_TRANSLATION retained_intron ENSMUSG00000029716 Tfr2 ENSMUST00000196471 ENSMUSP00000142814 TRANSLATION protein_coding - CCDS39333.1 1 798.0 5.0 9.14 4.0 88.4 1.0 -4,0 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000029716 Tfr2 ENSMUST00000198866 ENSMUSP00000142720 TRANSLATION protein_coding - CCDS39333.1 1 798.0 5.0 9.14 4.0 88.4 1.0 -4,0 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000029716 Tfr2 ENSMUST00000031729 ENSMUSP00000031729 TRANSLATION protein_coding - CCDS39333.1 1 798.0 5.0 9.14 4.0 88.4 1.0 -4,0 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000029716 Tfr2 ENSMUST00000199957 - NO_TRANSLATION retained_intron ENSMUSG00000029716 Tfr2 ENSMUST00000198783 ENSMUSP00000142502 TRANSLATION protein_coding - CCDS39333.1 1 798.0 5.0 9.14 4.0 88.4 1.0 -4,0 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000029716 Tfr2 ENSMUST00000197705 - NO_TRANSLATION retained_intron ENSMUSG00000029716 Tfr2 ENSMUST00000199069 - NO_TRANSLATION retained_intron ENSMUSG00000029716 Tfr2 ENSMUST00000196375 ENSMUSP00000142731 TRANSLATION protein_coding start - 3 123.0 0.0 1.48 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029716 Tfr2 ENSMUST00000199054 ENSMUSP00000142478 TRANSLATION protein_coding - CCDS39333.1 1 798.0 5.0 9.14 4.0 88.4 1.0 -4,0 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000066964 Lhfpl7 ENSMUST00000086615 ENSMUSP00000083808 TRANSLATION protein_coding - CCDS19548.1 1 195.0 0.0 0.75 2.5 62.4 0.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000029199 Lias ENSMUST00000126036 - NO_TRANSLATION retained_intron ENSMUSG00000029199 Lias ENSMUST00000122026 ENSMUSP00000113228 TRANSLATION protein_coding - CCDS19307.1 1 373.0 0.0 6.8 11.8 218.2 0.0 -4,0 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000029199 Lias ENSMUST00000200374 ENSMUSP00000143152 TRANSLATION protein_coding stop - 3 74.0 0.0 1.3 0.0 46.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029199 Lias ENSMUST00000139847 - NO_TRANSLATION retained_intron ENSMUSG00000029199 Lias ENSMUST00000127519 - NO_TRANSLATION retained_intron ENSMUSG00000029199 Lias ENSMUST00000031101 ENSMUSP00000031101 TRANSLATION protein_coding - CCDS80288.1 1 289.0 0.0 6.3 2.7 105.4 0.0 -4,-6 0.0979 6 5.469 MINOR ENSMUSG00000029368 Alb ENSMUST00000201356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029368 Alb ENSMUST00000031314 ENSMUSP00000031314 TRANSLATION protein_coding - CCDS19412.1 1 608.0 0.0 12.0 9.9 533.3 0.0 3,-3 1.0 60 15.0 PRINCIPAL:1 ENSMUSG00000029368 Alb ENSMUST00000201737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051596 Otop1 ENSMUST00000187863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051596 Otop1 ENSMUST00000063136 ENSMUSP00000061805 TRANSLATION protein_coding - - 5 503.0 0.0 2.15 0.0 148.0 6.0 -1,-7 0.0878 - 5.058 ALTERNATIVE:2 ENSMUSG00000051596 Otop1 ENSMUST00000114099 ENSMUSP00000109734 TRANSLATION protein_coding - - 5 600.0 0.0 2.55 0.3 148.0 8.0 -3,0 0.8202 1 6.0 PRINCIPAL:2 ENSMUSG00000117286 Gm1043 ENSMUST00000207619 ENSMUSP00000146423 TRANSLATION protein_coding start - 5 306.0 0.0 0.0 0.0 275.2 0.0 -4,-7 0.0296 - -2.0 MINOR ENSMUSG00000117286 Gm1043 ENSMUST00000208827 ENSMUSP00000147140 TRANSLATION protein_coding start - 5 350.0 0.0 0.0 0.0 281.5 0.0 -4,-7 0.0916 - -2.0 MINOR ENSMUSG00000117286 Gm1043 ENSMUST00000213782 - NO_TRANSLATION retained_intron ENSMUSG00000117286 Gm1043 ENSMUST00000232332 ENSMUSP00000156188 TRANSLATION protein_coding - - - 1431.0 0.0 0.0 0.0 270.7 0.0 -4,-5 0.4932 - 5.352 PRINCIPAL:1 ENSMUSG00000117286 Gm1043 ENSMUST00000094840 - NO_TRANSLATION retained_intron ENSMUSG00000029090 Adgra3 ENSMUST00000196229 - NO_TRANSLATION retained_intron ENSMUSG00000029090 Adgra3 ENSMUST00000198818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029090 Adgra3 ENSMUST00000030971 ENSMUSP00000030971 TRANSLATION protein_coding - CCDS51500.1 1 1310.0 0.0 4.998 0.0 157.6 0.0 2,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000029090 Adgra3 ENSMUST00000198868 - NO_TRANSLATION retained_intron ENSMUSG00000029090 Adgra3 ENSMUST00000196177 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029090 Adgra3 ENSMUST00000196915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029090 Adgra3 ENSMUST00000199132 - NO_TRANSLATION retained_intron ENSMUSG00000029249 Rest ENSMUST00000080359 ENSMUSP00000079231 TRANSLATION protein_coding - CCDS19372.1 1 1082.0 31.0 0.91 0.0 31.9 0.0 -4,-6 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000029249 Rest ENSMUST00000113449 ENSMUSP00000109076 TRANSLATION protein_coding - CCDS19372.1 1 1082.0 31.0 0.91 0.0 31.9 0.0 -4,-6 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000029392 Rilpl1 ENSMUST00000199766 ENSMUSP00000143250 TRANSLATION protein_coding start - 2 193.0 0.0 0.8 0.0 83.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029392 Rilpl1 ENSMUST00000199125 ENSMUSP00000142887 TRANSLATION protein_coding start - 3 196.0 0.0 0.8 0.0 83.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000029392 Rilpl1 ENSMUST00000062153 ENSMUSP00000050014 TRANSLATION protein_coding - CCDS19678.1 1 406.0 0.0 1.1 7.4 234.2 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000029392 Rilpl1 ENSMUST00000200202 ENSMUSP00000142757 TRANSLATION nonsense_mediated_decay start - 1 97.0 2.0 0.0 0.0 0.0 0.0 -4,-1 0.0013 - -2.0 MINOR ENSMUSG00000075551 Cyp3a41a ENSMUST00000094111 ENSMUSP00000091659 TRANSLATION protein_coding - CCDS19863.1 1 504.0 30.0 11.55 10.1 451.4 0.0 -1,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000029122 Evc ENSMUST00000154885 - NO_TRANSLATION retained_intron ENSMUSG00000029122 Evc ENSMUST00000114154 ENSMUSP00000109791 TRANSLATION protein_coding - - 1 857.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.6302 4 0.0 ALTERNATIVE:2 ENSMUSG00000029122 Evc ENSMUST00000139550 ENSMUSP00000120191 TRANSLATION protein_coding start - 3 91.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0157 - -2.0 MINOR ENSMUSG00000029122 Evc ENSMUST00000133376 - NO_TRANSLATION retained_intron ENSMUSG00000029122 Evc ENSMUST00000149890 - NO_TRANSLATION retained_intron ENSMUSG00000029122 Evc ENSMUST00000124426 - NO_TRANSLATION retained_intron ENSMUSG00000029122 Evc ENSMUST00000031005 ENSMUSP00000031005 TRANSLATION protein_coding - CCDS19247.1 1 1005.0 0.0 0.0 0.1 0.0 1.0 -4,-7 0.4202 5 0.0 PRINCIPAL:3 ENSMUSG00000029122 Evc ENSMUST00000146568 ENSMUSP00000114825 TRANSLATION protein_coding start - 5 144.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.043 - -2.0 MINOR ENSMUSG00000029122 Evc ENSMUST00000114148 ENSMUSP00000109785 TRANSLATION protein_coding - - 1 629.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.1003 2 0.0 ALTERNATIVE:2 ENSMUSG00000091255 Speer4e ENSMUST00000159973 ENSMUSP00000125587 TRANSLATION protein_coding - CCDS51417.1 5 255.0 0.0 2.25 0.0 98.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029186 Pi4k2b ENSMUST00000145825 - NO_TRANSLATION retained_intron ENSMUSG00000029186 Pi4k2b ENSMUST00000131526 ENSMUSP00000142802 TRANSLATION nonsense_mediated_decay - - 5 89.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029186 Pi4k2b ENSMUST00000031081 ENSMUSP00000031081 TRANSLATION protein_coding - CCDS19287.1 1 469.0 0.0 6.505 0.3 247.0 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000029186 Pi4k2b ENSMUST00000031082 ENSMUSP00000031082 TRANSLATION protein_coding - CCDS39086.1 2 446.0 0.0 5.505 0.0 233.7 0.0 -4,-5 0.0468 8 9.204 MINOR ENSMUSG00000064037 Gpn1 ENSMUST00000201942 - NO_TRANSLATION retained_intron ENSMUSG00000064037 Gpn1 ENSMUST00000201053 ENSMUSP00000144015 TRANSLATION nonsense_mediated_decay - - 5 85.0 7.0 2.0 0.0 59.3 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000064037 Gpn1 ENSMUST00000200870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064037 Gpn1 ENSMUST00000202515 - NO_TRANSLATION retained_intron ENSMUSG00000064037 Gpn1 ENSMUST00000202394 ENSMUSP00000144105 TRANSLATION protein_coding - - 1 91.0 7.0 2.5 0.0 84.8 0.0 -3,-6 0.0 2 0.666 MINOR ENSMUSG00000064037 Gpn1 ENSMUST00000076949 ENSMUSP00000076217 TRANSLATION protein_coding - CCDS19185.1 1 372.0 15.0 9.25 4.8 284.8 0.0 -3,-6 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000064037 Gpn1 ENSMUST00000201881 - NO_TRANSLATION retained_intron ENSMUSG00000029390 Tmed2 ENSMUST00000124529 ENSMUSP00000115169 TRANSLATION protein_coding start - 2 176.0 0.0 2.75 0.0 134.8 1.0 -4,-2 0.0031 6 -2.0 MINOR ENSMUSG00000029390 Tmed2 ENSMUST00000197112 - NO_TRANSLATION retained_intron ENSMUSG00000029390 Tmed2 ENSMUST00000135464 ENSMUSP00000120809 TRANSLATION protein_coding start - 1 112.0 0.0 1.75 0.0 83.4 1.0 -4,-5 0.0004 5 -2.0 MINOR ENSMUSG00000029390 Tmed2 ENSMUST00000060226 ENSMUSP00000054834 TRANSLATION protein_coding - CCDS19679.1 1 201.0 0.0 4.18 25.1 168.1 1.0 4,-1 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000029390 Tmed2 ENSMUST00000200031 ENSMUSP00000142701 TRANSLATION nonsense_mediated_decay start - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029505 Ep400 ENSMUST00000141986 - NO_TRANSLATION retained_intron ENSMUSG00000029505 Ep400 ENSMUST00000122901 - NO_TRANSLATION retained_intron ENSMUSG00000029505 Ep400 ENSMUST00000146458 ENSMUSP00000138369 TRANSLATION protein_coding - - 1 649.0 0.0 0.0 0.0 775.1 0.0 -4,-2 0.0438 5 0.0 MINOR ENSMUSG00000029505 Ep400 ENSMUST00000125325 ENSMUSP00000116137 TRANSLATION protein_coding start/stop - 5 325.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0005 8 -2.0 MINOR ENSMUSG00000029505 Ep400 ENSMUST00000112433 ENSMUSP00000108052 TRANSLATION protein_coding - - 1 686.0 0.0 0.0 0.0 870.8 0.0 -4,-2 0.0629 5 0.0 MINOR ENSMUSG00000029505 Ep400 ENSMUST00000129884 - NO_TRANSLATION retained_intron ENSMUSG00000029505 Ep400 ENSMUST00000041558 ENSMUSP00000049038 TRANSLATION protein_coding - CCDS19529.1 1 3035.0 0.0 8.15 0.0 1035.1 0.0 -4,-2 1.0 38 8.0 PRINCIPAL:2 ENSMUSG00000029505 Ep400 ENSMUST00000112436 ENSMUSP00000108055 TRANSLATION protein_coding - CCDS51612.1 1 2999.0 0.0 8.15 0.0 1035.1 0.0 -4,-2 0.7337 37 8.0 ALTERNATIVE:2 ENSMUSG00000029505 Ep400 ENSMUST00000146652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029505 Ep400 ENSMUST00000144581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018001 Cyth3 ENSMUST00000198355 - NO_TRANSLATION retained_intron ENSMUSG00000018001 Cyth3 ENSMUST00000177281 ENSMUSP00000135287 TRANSLATION protein_coding stop - 5 93.0 0.0 2.16 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000018001 Cyth3 ENSMUST00000116456 ENSMUSP00000112157 TRANSLATION protein_coding - CCDS19845.1 1 399.0 12.0 10.16 9.3 323.6 0.0 -4,-5 1.0 4 16.088 PRINCIPAL:4 ENSMUSG00000018001 Cyth3 ENSMUST00000131436 ENSMUSP00000118290 TRANSLATION protein_coding stop - 3 70.0 0.0 2.08 0.0 41.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018001 Cyth3 ENSMUST00000110727 ENSMUSP00000106355 TRANSLATION protein_coding - CCDS51691.1 1 351.0 12.0 9.08 16.9 323.6 0.0 -4,-5 0.9652 4 15.84 ALTERNATIVE:1 ENSMUSG00000018001 Cyth3 ENSMUST00000177196 ENSMUSP00000135548 TRANSLATION protein_coding stop - 3 9.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025854 Fam20c ENSMUST00000160645 ENSMUSP00000124584 TRANSLATION nonsense_mediated_decay - - 1 203.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0 3 -2.0 MINOR ENSMUSG00000025854 Fam20c ENSMUST00000161641 - NO_TRANSLATION retained_intron ENSMUSG00000025854 Fam20c ENSMUST00000026972 ENSMUSP00000026972 TRANSLATION protein_coding - CCDS51681.1 1 579.0 14.0 7.45 5.3 354.4 0.0 0,-4 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000025854 Fam20c ENSMUST00000160988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025854 Fam20c ENSMUST00000197027 - NO_TRANSLATION retained_intron ENSMUSG00000025854 Fam20c ENSMUST00000159176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029306 Ibsp ENSMUST00000031246 ENSMUSP00000031246 TRANSLATION protein_coding - CCDS19485.1 1 324.0 0.0 0.0 1.0 412.9 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000072814 Pramel54 ENSMUST00000154086 ENSMUSP00000115998 TRANSLATION protein_coding stop - 3 165.0 0.0 1.4 0.0 0.0 0.0 -4,-6 0.0058 - -2.0 MINOR ENSMUSG00000072814 Pramel54 ENSMUST00000136313 ENSMUSP00000114696 TRANSLATION protein_coding - - 5 481.0 2.0 3.45 0.4 0.0 0.0 -4,-6 0.6447 - 8.0 PRINCIPAL:1 ENSMUSG00000029110 Rnf4 ENSMUST00000182810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029110 Rnf4 ENSMUST00000182970 - NO_TRANSLATION retained_intron ENSMUSG00000029110 Rnf4 ENSMUST00000182582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029110 Rnf4 ENSMUST00000182709 ENSMUSP00000138555 TRANSLATION protein_coding - CCDS57336.1 1 194.0 8.0 2.632 0.4 41.6 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000029110 Rnf4 ENSMUST00000030992 ENSMUSP00000030992 TRANSLATION protein_coding - CCDS57336.1 1 194.0 8.0 2.632 0.4 41.6 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000029110 Rnf4 ENSMUST00000182583 ENSMUSP00000138594 TRANSLATION protein_coding stop - 5 115.0 0.0 0.882 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029110 Rnf4 ENSMUST00000182047 ENSMUSP00000138411 TRANSLATION protein_coding - CCDS57336.1 1 194.0 8.0 2.632 0.4 41.6 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000029110 Rnf4 ENSMUST00000182772 - NO_TRANSLATION retained_intron ENSMUSG00000029110 Rnf4 ENSMUST00000183265 - NO_TRANSLATION retained_intron ENSMUSG00000029110 Rnf4 ENSMUST00000183071 - NO_TRANSLATION retained_intron ENSMUSG00000029110 Rnf4 ENSMUST00000181999 - NO_TRANSLATION retained_intron ENSMUSG00000029110 Rnf4 ENSMUST00000181991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053194 Cib4 ENSMUST00000065486 ENSMUSP00000066222 TRANSLATION protein_coding - CCDS51453.1 1 185.0 13.0 5.13 12.6 39.3 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000050248 Evc2 ENSMUST00000101258 - NO_TRANSLATION retained_intron ENSMUSG00000050248 Evc2 ENSMUST00000159854 - NO_TRANSLATION retained_intron ENSMUSG00000050248 Evc2 ENSMUST00000159915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050248 Evc2 ENSMUST00000056365 ENSMUSP00000055130 TRANSLATION protein_coding - CCDS19248.1 1 1220.0 0.0 0.0 0.3 624.2 0.0 -2,-5 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000070473 Cldn3 ENSMUST00000094245 ENSMUSP00000091799 TRANSLATION protein_coding - CCDS19729.1 - 219.0 0.0 1.0 34.6 115.1 0.0 -1,-4 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029414 Kntc1 ENSMUST00000198716 - NO_TRANSLATION retained_intron ENSMUSG00000029414 Kntc1 ENSMUST00000198841 ENSMUSP00000143142 TRANSLATION protein_coding start - 2 106.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029414 Kntc1 ENSMUST00000197002 - NO_TRANSLATION retained_intron ENSMUSG00000029414 Kntc1 ENSMUST00000197665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029414 Kntc1 ENSMUST00000197265 ENSMUSP00000142523 TRANSLATION nonsense_mediated_decay start - 3 110.0 0.0 1.25 0.0 190.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029414 Kntc1 ENSMUST00000031366 ENSMUSP00000031366 TRANSLATION protein_coding - CCDS39274.1 1 2207.0 0.0 6.5 6.9 841.9 0.0 -4,-5 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000029414 Kntc1 ENSMUST00000199838 - NO_TRANSLATION retained_intron ENSMUSG00000029712 Actl6b ENSMUST00000125489 ENSMUSP00000121672 TRANSLATION protein_coding stop - 3 20.0 0.0 0.66 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029712 Actl6b ENSMUST00000136565 ENSMUSP00000117425 TRANSLATION protein_coding stop - 3 116.0 8.0 2.03 0.0 124.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000029712 Actl6b ENSMUST00000136088 ENSMUSP00000117138 TRANSLATION protein_coding stop - 3 74.0 0.0 2.58 0.0 84.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029712 Actl6b ENSMUST00000145500 - NO_TRANSLATION retained_intron ENSMUSG00000029712 Actl6b ENSMUST00000149292 ENSMUSP00000123004 TRANSLATION protein_coding stop - 3 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000029712 Actl6b ENSMUST00000031725 ENSMUSP00000031725 TRANSLATION nonsense_mediated_decay - - 5 381.0 23.0 7.45 0.0 393.0 0.0 -4,-5 0.0006 7 -2.0 MINOR ENSMUSG00000029712 Actl6b ENSMUST00000198601 ENSMUSP00000143702 TRANSLATION nonsense_mediated_decay - - 2 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029712 Actl6b ENSMUST00000196154 - NO_TRANSLATION retained_intron ENSMUSG00000029712 Actl6b ENSMUST00000139395 ENSMUSP00000119356 TRANSLATION protein_coding - CCDS19770.1 1 426.0 24.0 8.95 34.9 486.8 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000029372 Ppbp ENSMUST00000031319 ENSMUSP00000031319 TRANSLATION protein_coding - CCDS19415.1 1 113.0 0.0 1.75 0.3 37.9 0.0 0,-3 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000029146 Snx17 ENSMUST00000202124 ENSMUSP00000144168 TRANSLATION nonsense_mediated_decay - - 5 66.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029146 Snx17 ENSMUST00000202323 - NO_TRANSLATION retained_intron ENSMUSG00000029146 Snx17 ENSMUST00000200730 ENSMUSP00000144504 TRANSLATION nonsense_mediated_decay - - 5 87.0 0.0 2.125 0.0 53.7 0.0 -4,-5 0.0006 4 -2.0 MINOR ENSMUSG00000029146 Snx17 ENSMUST00000202032 - NO_TRANSLATION retained_intron ENSMUSG00000029146 Snx17 ENSMUST00000201679 ENSMUSP00000144688 TRANSLATION protein_coding stop - 5 67.0 0.0 1.705 0.0 29.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029146 Snx17 ENSMUST00000202743 - NO_TRANSLATION retained_intron ENSMUSG00000029146 Snx17 ENSMUST00000201835 - NO_TRANSLATION retained_intron ENSMUSG00000029146 Snx17 ENSMUST00000201535 ENSMUSP00000144643 TRANSLATION protein_coding stop - 3 169.0 0.0 5.33 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000029146 Snx17 ENSMUST00000201343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029146 Snx17 ENSMUST00000202318 - NO_TRANSLATION retained_intron ENSMUSG00000029146 Snx17 ENSMUST00000031029 ENSMUSP00000031029 TRANSLATION protein_coding - CCDS19177.1 1 470.0 0.0 9.235 29.9 62.3 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000039623 Ap5z1 ENSMUST00000196405 - NO_TRANSLATION retained_intron ENSMUSG00000039623 Ap5z1 ENSMUST00000197293 - NO_TRANSLATION retained_intron ENSMUSG00000039623 Ap5z1 ENSMUST00000196055 ENSMUSP00000143179 TRANSLATION protein_coding - - 1 791.0 0.0 0.0 0.0 141.6 0.0 -4,-5 0.1178 14 6.0 MINOR ENSMUSG00000039623 Ap5z1 ENSMUST00000198135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039623 Ap5z1 ENSMUST00000198967 ENSMUSP00000143040 TRANSLATION protein_coding stop - 2 77.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000039623 Ap5z1 ENSMUST00000197173 ENSMUSP00000142777 TRANSLATION nonsense_mediated_decay - - 3 93.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000039623 Ap5z1 ENSMUST00000038699 ENSMUSP00000041863 TRANSLATION protein_coding - CCDS39361.1 1 807.0 0.0 0.0 13.3 141.6 0.0 -4,-5 1.0 14 10.0 PRINCIPAL:1 ENSMUSG00000034981 Parm1 ENSMUST00000040576 ENSMUSP00000042844 TRANSLATION protein_coding - CCDS39146.1 1 296.0 0.0 0.75 0.8 389.1 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000004415 Col26a1 ENSMUST00000057497 ENSMUSP00000052095 TRANSLATION protein_coding - CCDS19755.1 1 440.0 0.0 1.25 5.4 99.9 0.0 1,-2 1.0 1 10.0 PRINCIPAL:4 ENSMUSG00000004415 Col26a1 ENSMUST00000156962 - NO_TRANSLATION retained_intron ENSMUSG00000004415 Col26a1 ENSMUST00000125061 - NO_TRANSLATION retained_intron ENSMUSG00000004415 Col26a1 ENSMUST00000140245 - NO_TRANSLATION retained_intron ENSMUSG00000004415 Col26a1 ENSMUST00000153127 - NO_TRANSLATION retained_intron ENSMUSG00000004415 Col26a1 ENSMUST00000111103 ENSMUSP00000106732 TRANSLATION protein_coding - CCDS84976.1 1 438.0 0.0 1.25 5.4 95.3 0.0 1,-2 0.784 1 10.0 ALTERNATIVE:1 ENSMUSG00000004415 Col26a1 ENSMUST00000196053 - NO_TRANSLATION retained_intron ENSMUSG00000004415 Col26a1 ENSMUST00000141744 - NO_TRANSLATION retained_intron ENSMUSG00000004415 Col26a1 ENSMUST00000173496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004415 Col26a1 ENSMUST00000147083 - NO_TRANSLATION retained_intron ENSMUSG00000004415 Col26a1 ENSMUST00000126311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064280 Ccdc146 ENSMUST00000123796 - NO_TRANSLATION retained_intron ENSMUSG00000064280 Ccdc146 ENSMUST00000030552 ENSMUSP00000030552 TRANSLATION protein_coding - - 1 363.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6084 - 0.0 ALTERNATIVE:2 ENSMUSG00000064280 Ccdc146 ENSMUST00000115245 ENSMUSP00000110900 TRANSLATION protein_coding - CCDS51427.1 5 977.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.4084 2 0.0 PRINCIPAL:3 ENSMUSG00000064280 Ccdc146 ENSMUST00000129172 - NO_TRANSLATION retained_intron ENSMUSG00000064280 Ccdc146 ENSMUST00000132473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028780 Sema3c ENSMUST00000170181 ENSMUSP00000126614 TRANSLATION nonsense_mediated_decay - - 5 42.0 2.0 0.0 0.0 0.0 0.0 2,-3 0.0031 - -2.0 MINOR ENSMUSG00000028780 Sema3c ENSMUST00000169603 ENSMUSP00000132330 TRANSLATION protein_coding stop - 3 226.0 2.0 4.478 0.0 176.8 0.0 1,-3 0.0004 1 -2.0 MINOR ENSMUSG00000028780 Sema3c ENSMUST00000170348 - NO_TRANSLATION retained_intron ENSMUSG00000028780 Sema3c ENSMUST00000030568 ENSMUSP00000030568 TRANSLATION protein_coding - CCDS19099.1 1 751.0 2.0 11.088 24.9 517.8 0.0 1,-3 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000028780 Sema3c ENSMUST00000115271 - NO_TRANSLATION retained_intron ENSMUSG00000005299 Letm1 ENSMUST00000201981 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005299 Letm1 ENSMUST00000148451 ENSMUSP00000143805 TRANSLATION protein_coding - - 2 47.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0006 - 0.0 MINOR ENSMUSG00000005299 Letm1 ENSMUST00000005431 ENSMUSP00000005431 TRANSLATION protein_coding - CCDS19207.1 1 738.0 3.0 2.56 0.0 368.3 0.0 -4,0 1.0 26 15.0 PRINCIPAL:1 ENSMUSG00000005299 Letm1 ENSMUST00000144071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005299 Letm1 ENSMUST00000149886 - NO_TRANSLATION retained_intron ENSMUSG00000005299 Letm1 ENSMUST00000200827 ENSMUSP00000144491 TRANSLATION nonsense_mediated_decay start - 5 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 - -2.0 MINOR ENSMUSG00000034219 Septin14 ENSMUST00000182386 ENSMUSP00000138729 TRANSLATION protein_coding - CCDS59685.1 5 429.0 16.0 5.8 5.7 323.1 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000034219 Septin14 ENSMUST00000182381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090061 Nwd2 ENSMUST00000162166 ENSMUSP00000124587 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 0.2 0.0 0.0 0.0 -4,-1 0.0004 - -2.0 MINOR ENSMUSG00000090061 Nwd2 ENSMUST00000162757 ENSMUSP00000143642 TRANSLATION protein_coding start - 3 69.0 11.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000090061 Nwd2 ENSMUST00000160066 - NO_TRANSLATION retained_intron ENSMUSG00000090061 Nwd2 ENSMUST00000159584 ENSMUSP00000124712 TRANSLATION protein_coding - CCDS51508.1 1 1742.0 15.0 1.95 21.1 22.4 0.0 -4,0 1.0 30 22.0 PRINCIPAL:1 ENSMUSG00000029528 Pxn ENSMUST00000212819 ENSMUSP00000148843 TRANSLATION protein_coding - - 5 1062.0 28.0 5.9 0.0 555.8 0.0 -4,-5 0.4169 24 18.0 ALTERNATIVE:2 ENSMUSG00000029528 Pxn ENSMUST00000202564 ENSMUSP00000144459 TRANSLATION protein_coding - - 5 424.0 28.0 5.9 8.0 447.0 0.0 -4,-6 0.8625 13 15.0 MINOR ENSMUSG00000029528 Pxn ENSMUST00000157050 ENSMUSP00000143926 TRANSLATION protein_coding stop - 5 106.0 0.0 1.0 0.0 182.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029528 Pxn ENSMUST00000067268 ENSMUSP00000069624 TRANSLATION protein_coding - CCDS19593.1 1 557.0 28.0 5.9 0.0 555.8 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:2 ENSMUSG00000029528 Pxn ENSMUST00000086523 ENSMUSP00000083709 TRANSLATION protein_coding - CCDS39229.1 2 591.0 28.0 5.9 0.0 555.8 0.0 -4,-5 0.2814 17 18.0 ALTERNATIVE:2 ENSMUSG00000029528 Pxn ENSMUST00000139834 - NO_TRANSLATION retained_intron ENSMUSG00000029528 Pxn ENSMUST00000138139 - NO_TRANSLATION retained_intron ENSMUSG00000029528 Pxn ENSMUST00000152156 - NO_TRANSLATION retained_intron ENSMUSG00000029528 Pxn ENSMUST00000125054 - NO_TRANSLATION retained_intron ENSMUSG00000029528 Pxn ENSMUST00000125007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029528 Pxn ENSMUST00000129897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029528 Pxn ENSMUST00000137716 ENSMUSP00000144513 TRANSLATION protein_coding stop - 5 121.0 0.0 1.0 0.0 205.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029528 Pxn ENSMUST00000153682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029528 Pxn ENSMUST00000134198 - NO_TRANSLATION retained_intron ENSMUSG00000029394 Cdk2ap1 ENSMUST00000111474 ENSMUSP00000107099 TRANSLATION protein_coding - - 2 87.0 0.0 1.75 19.6 74.7 0.0 -4,-6 1.0 - 15.892 PRINCIPAL:1 ENSMUSG00000029394 Cdk2ap1 ENSMUST00000196910 ENSMUSP00000143268 TRANSLATION protein_coding - - 2 87.0 0.0 1.75 19.6 74.7 0.0 -4,-6 1.0 - 15.892 PRINCIPAL:1 ENSMUSG00000029394 Cdk2ap1 ENSMUST00000111473 ENSMUSP00000107098 TRANSLATION protein_coding - - 1 87.0 0.0 1.75 19.6 74.7 0.0 -4,-6 1.0 - 15.892 PRINCIPAL:1 ENSMUSG00000029394 Cdk2ap1 ENSMUST00000031341 ENSMUSP00000031341 TRANSLATION protein_coding - CCDS39279.1 1 114.0 0.0 1.75 9.9 76.1 0.0 -4,-7 0.9177 - 13.912 MINOR ENSMUSG00000029394 Cdk2ap1 ENSMUST00000111472 ENSMUSP00000107097 TRANSLATION protein_coding - - 5 87.0 0.0 1.75 19.6 74.7 0.0 -4,-6 1.0 - 15.892 PRINCIPAL:1 ENSMUSG00000029646 Cdx2 ENSMUST00000031650 ENSMUSP00000031650 TRANSLATION protein_coding - CCDS19878.1 1 311.0 0.0 1.6 10.7 192.5 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000072647 Adam1a ENSMUST00000100757 ENSMUSP00000098320 TRANSLATION protein_coding - CCDS19637.1 - 791.0 19.0 0.2 0.0 457.3 0.0 -4,0 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000046562 Unc119b ENSMUST00000153403 - NO_TRANSLATION retained_intron ENSMUSG00000046562 Unc119b ENSMUST00000137140 - NO_TRANSLATION retained_intron ENSMUSG00000046562 Unc119b ENSMUST00000060798 ENSMUSP00000055475 TRANSLATION protein_coding - CCDS19580.1 1 251.0 0.0 2.83 9.9 244.6 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000040751 Lat2 ENSMUST00000200737 ENSMUSP00000143998 TRANSLATION nonsense_mediated_decay - - 5 119.0 0.0 0.0 0.0 77.6 0.0 2,-3 0.0044 2 -2.0 MINOR ENSMUSG00000040751 Lat2 ENSMUST00000200945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040751 Lat2 ENSMUST00000202746 - NO_TRANSLATION retained_intron ENSMUSG00000040751 Lat2 ENSMUST00000036362 ENSMUSP00000046900 TRANSLATION protein_coding - CCDS39312.1 1 203.0 0.0 0.0 0.0 261.8 0.0 2,-3 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000040751 Lat2 ENSMUST00000202461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040751 Lat2 ENSMUST00000077636 ENSMUSP00000076824 TRANSLATION protein_coding - CCDS39311.1 1 191.0 0.0 0.0 0.0 213.6 0.0 2,-3 0.094 2 3.108 MINOR ENSMUSG00000040751 Lat2 ENSMUST00000201632 ENSMUSP00000144457 TRANSLATION protein_coding start - 5 101.0 0.0 0.0 0.0 152.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040751 Lat2 ENSMUST00000201832 - NO_TRANSLATION retained_intron ENSMUSG00000040751 Lat2 ENSMUST00000202085 ENSMUSP00000144611 TRANSLATION protein_coding stop - 3 115.0 0.0 0.0 0.0 98.9 0.0 2,-3 0.0044 2 -2.0 MINOR ENSMUSG00000040751 Lat2 ENSMUST00000200998 ENSMUSP00000143977 TRANSLATION protein_coding - CCDS39312.1 1 203.0 0.0 0.0 0.0 261.8 0.0 2,-3 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000033467 Crlf2 ENSMUST00000198960 ENSMUSP00000142982 TRANSLATION protein_coding start - 3 226.0 0.0 1.5 0.0 0.0 1.0 -4,-5 0.0217 1 -2.0 MINOR ENSMUSG00000033467 Crlf2 ENSMUST00000200284 ENSMUSP00000143641 TRANSLATION protein_coding - CCDS80356.1 1 357.0 0.0 3.75 0.0 0.0 1.0 -4,-5 0.5248 3 6.0 ALTERNATIVE:2 ENSMUSG00000033467 Crlf2 ENSMUST00000044579 ENSMUSP00000036326 TRANSLATION protein_coding - CCDS19521.1 1 359.0 0.0 3.75 0.0 0.0 1.0 2,-2 1.0 3 6.0 PRINCIPAL:2 ENSMUSG00000029286 Enam ENSMUST00000199104 ENSMUSP00000142854 TRANSLATION protein_coding - - 1 1349.0 0.0 0.0 0.0 1234.5 0.0 -3,-1 0.9609 - 0.0 PRINCIPAL:2 ENSMUSG00000029286 Enam ENSMUST00000031222 ENSMUSP00000031222 TRANSLATION protein_coding - CCDS19400.1 1 1274.0 0.0 0.0 0.0 1234.5 0.0 -1,-5 0.6968 - 0.0 ALTERNATIVE:2 ENSMUSG00000075543 Urad ENSMUST00000100433 ENSMUSP00000098000 TRANSLATION protein_coding - CCDS39399.1 1 178.0 9.0 2.0 0.0 136.2 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000045314 Sowahb ENSMUST00000061328 ENSMUSP00000055267 TRANSLATION protein_coding - CCDS19435.1 - 760.0 0.0 0.0 0.1 35.4 0.0 -4,-5 1.0 13 6.0 PRINCIPAL:1 ENSMUSG00000029401 Rilpl2 ENSMUST00000198413 - NO_TRANSLATION retained_intron ENSMUSG00000029401 Rilpl2 ENSMUST00000031347 ENSMUSP00000031347 TRANSLATION protein_coding - CCDS19676.1 1 197.0 0.0 2.0 0.4 78.3 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000049285 Mblac1 ENSMUST00000057773 ENSMUSP00000052869 TRANSLATION protein_coding - CCDS19796.1 - 260.0 7.0 0.5 0.0 52.2 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000029202 Pds5a ENSMUST00000202107 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000200766 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000201046 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000201673 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000200790 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000201034 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000201987 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000031104 ENSMUSP00000031104 TRANSLATION protein_coding - CCDS39099.1 5 1332.0 0.0 25.4 10.7 0.0 0.0 -4,-6 1.0 33 9.0 PRINCIPAL:1 ENSMUSG00000029202 Pds5a ENSMUST00000202910 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000201109 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000202648 ENSMUSP00000144463 TRANSLATION protein_coding start - 3 140.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0057 2 -2.0 MINOR ENSMUSG00000029202 Pds5a ENSMUST00000202698 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000201420 - NO_TRANSLATION retained_intron ENSMUSG00000029202 Pds5a ENSMUST00000201948 ENSMUSP00000144171 TRANSLATION protein_coding - CCDS39099.1 5 1332.0 0.0 25.4 10.7 0.0 0.0 -4,-6 1.0 33 9.0 PRINCIPAL:1 ENSMUSG00000029467 Atp2a2 ENSMUST00000179939 ENSMUSP00000135935 TRANSLATION nonsense_mediated_decay - CCDS57378.1 1 1044.0 14.0 17.83 28.8 474.9 4.0 -4,-5 0.9459 27 -2.0 MINOR ENSMUSG00000029467 Atp2a2 ENSMUST00000196490 - NO_TRANSLATION retained_intron ENSMUSG00000029467 Atp2a2 ENSMUST00000197415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029467 Atp2a2 ENSMUST00000031423 ENSMUSP00000031423 TRANSLATION protein_coding - CCDS57378.1 1 1044.0 14.0 17.83 28.8 474.9 4.0 -4,-5 0.9459 27 16.998 PRINCIPAL:3 ENSMUSG00000029467 Atp2a2 ENSMUST00000177974 ENSMUSP00000136104 TRANSLATION protein_coding - CCDS57379.1 1 998.0 14.0 18.33 27.0 474.9 4.0 -4,-5 1.0 25 17.74 ALTERNATIVE:1 ENSMUSG00000039206 Daglb ENSMUST00000174273 - NO_TRANSLATION retained_intron ENSMUSG00000039206 Daglb ENSMUST00000155383 - NO_TRANSLATION retained_intron ENSMUSG00000039206 Daglb ENSMUST00000199577 - NO_TRANSLATION retained_intron ENSMUSG00000039206 Daglb ENSMUST00000045593 ENSMUSP00000043088 TRANSLATION protein_coding - CCDS39370.1 1 669.0 0.0 1.607 12.0 57.3 0.0 -4,-6 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000054675 Tmem119 ENSMUST00000067853 ENSMUSP00000070551 TRANSLATION protein_coding - CCDS19554.1 1 280.0 0.0 0.0 0.1 434.6 0.0 3,-2 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000054675 Tmem119 ENSMUST00000160374 ENSMUSP00000124226 TRANSLATION protein_coding stop - 3 33.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0053 - -2.0 MINOR ENSMUSG00000029156 Sgcb ENSMUST00000081170 ENSMUSP00000079937 TRANSLATION protein_coding - CCDS19344.1 1 320.0 0.0 3.8 0.4 217.4 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000029156 Sgcb ENSMUST00000201416 - NO_TRANSLATION retained_intron ENSMUSG00000029190 D5Ertd579e ENSMUST00000031091 ENSMUSP00000031091 TRANSLATION protein_coding - - 5 1396.0 0.0 0.0 4.6 2272.8 0.0 -4,-6 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000029190 D5Ertd579e ENSMUST00000201720 - NO_TRANSLATION retained_intron ENSMUSG00000029190 D5Ertd579e ENSMUST00000202510 - NO_TRANSLATION retained_intron ENSMUSG00000029190 D5Ertd579e ENSMUST00000132383 ENSMUSP00000116548 TRANSLATION protein_coding start - 2 203.0 0.0 0.0 0.0 298.0 0.0 -4,-6 0.001 - -2.0 MINOR ENSMUSG00000029190 D5Ertd579e ENSMUST00000140653 ENSMUSP00000144240 TRANSLATION protein_coding - - 1 83.0 0.0 0.0 0.0 115.9 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000029190 D5Ertd579e ENSMUST00000150088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029190 D5Ertd579e ENSMUST00000140063 - NO_TRANSLATION retained_intron ENSMUSG00000040118 Cacna2d1 ENSMUST00000200294 - NO_TRANSLATION retained_intron ENSMUSG00000040118 Cacna2d1 ENSMUST00000199704 ENSMUSP00000142881 TRANSLATION protein_coding - CCDS80212.1 1 1079.0 3.0 23.45 8.1 922.2 2.0 0,-3 0.8916 33 16.346 MINOR ENSMUSG00000040118 Cacna2d1 ENSMUST00000078272 ENSMUSP00000077391 TRANSLATION protein_coding - CCDS19096.1 1 1084.0 3.0 23.45 12.3 922.2 2.0 0,-3 0.9656 33 17.734 MINOR ENSMUSG00000040118 Cacna2d1 ENSMUST00000200270 - NO_TRANSLATION retained_intron ENSMUSG00000040118 Cacna2d1 ENSMUST00000200158 - NO_TRANSLATION retained_intron ENSMUSG00000040118 Cacna2d1 ENSMUST00000199236 - NO_TRANSLATION retained_intron ENSMUSG00000040118 Cacna2d1 ENSMUST00000180204 ENSMUSP00000136260 TRANSLATION protein_coding - CCDS51423.1 1 1086.0 3.0 23.12 8.3 922.2 2.0 0,-3 0.8966 33 15.75 MINOR ENSMUSG00000040118 Cacna2d1 ENSMUST00000039370 ENSMUSP00000049457 TRANSLATION protein_coding - CCDS51421.1 1 1103.0 3.0 23.95 13.1 922.2 2.0 0,-3 1.0 33 19.0 PRINCIPAL:1 ENSMUSG00000040118 Cacna2d1 ENSMUST00000196750 ENSMUSP00000143082 TRANSLATION protein_coding - - 1 100.0 0.0 1.95 0.0 0.0 0.0 0,-3 0.0 3 0.0 MINOR ENSMUSG00000040118 Cacna2d1 ENSMUST00000101581 ENSMUSP00000099117 TRANSLATION protein_coding - CCDS51422.1 1 1091.0 3.0 23.12 8.3 922.2 2.0 0,-3 0.9001 33 15.75 MINOR ENSMUSG00000004947 Dtx2 ENSMUST00000130345 ENSMUSP00000119285 TRANSLATION protein_coding stop - 3 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0125 - -2.0 MINOR ENSMUSG00000004947 Dtx2 ENSMUST00000111144 ENSMUSP00000106774 TRANSLATION protein_coding - CCDS57390.1 1 573.0 8.0 5.113 9.3 136.5 0.0 -4,-7 0.8996 7 17.0 PRINCIPAL:3 ENSMUSG00000004947 Dtx2 ENSMUST00000005072 ENSMUSP00000005072 TRANSLATION protein_coding - CCDS39322.1 1 618.0 8.0 5.113 9.3 136.5 0.0 -4,-7 1.0 5 17.0 ALTERNATIVE:1 ENSMUSG00000004947 Dtx2 ENSMUST00000111142 ENSMUSP00000106772 TRANSLATION protein_coding - CCDS57389.1 1 619.0 8.0 5.113 9.3 136.5 0.0 -4,-7 0.9966 6 17.0 ALTERNATIVE:1 ENSMUSG00000004947 Dtx2 ENSMUST00000140146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004947 Dtx2 ENSMUST00000199239 ENSMUSP00000142472 TRANSLATION protein_coding stop - 2 151.0 0.0 0.363 0.0 87.4 0.0 -4,-7 0.0003 1 -2.0 MINOR ENSMUSG00000004947 Dtx2 ENSMUST00000142041 - NO_TRANSLATION retained_intron ENSMUSG00000004947 Dtx2 ENSMUST00000125827 ENSMUSP00000115122 TRANSLATION nonsense_mediated_decay - - 1 357.0 0.0 0.363 0.0 113.6 0.0 -4,-7 0.003 2 -2.0 MINOR ENSMUSG00000004947 Dtx2 ENSMUST00000111145 ENSMUSP00000106775 TRANSLATION protein_coding - CCDS57390.1 1 573.0 8.0 5.113 9.3 136.5 0.0 -4,-7 0.8996 7 17.0 PRINCIPAL:3 ENSMUSG00000029516 Cit ENSMUST00000145363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029516 Cit ENSMUST00000147330 - NO_TRANSLATION retained_intron ENSMUSG00000029516 Cit ENSMUST00000122877 - NO_TRANSLATION retained_intron ENSMUSG00000029516 Cit ENSMUST00000202734 - NO_TRANSLATION retained_intron ENSMUSG00000029516 Cit ENSMUST00000127976 - NO_TRANSLATION retained_intron ENSMUSG00000029516 Cit ENSMUST00000148245 ENSMUSP00000119769 TRANSLATION protein_coding stop - 5 181.0 1.0 2.73 0.0 46.9 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000029516 Cit ENSMUST00000136780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029516 Cit ENSMUST00000112008 ENSMUSP00000107639 TRANSLATION protein_coding - - 5 2028.0 3.0 6.61 5.9 451.6 0.0 -4,-2 0.5265 45 12.168 MINOR ENSMUSG00000029516 Cit ENSMUST00000137952 ENSMUSP00000122745 TRANSLATION protein_coding stop - 5 175.0 1.0 2.4 0.0 40.5 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000029516 Cit ENSMUST00000153407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029516 Cit ENSMUST00000134609 - NO_TRANSLATION retained_intron ENSMUSG00000029516 Cit ENSMUST00000128702 - NO_TRANSLATION retained_intron ENSMUSG00000029516 Cit ENSMUST00000141101 ENSMUSP00000115802 TRANSLATION protein_coding - - 5 2013.0 3.0 6.61 4.1 451.6 0.0 -4,-2 0.4467 45 11.74 MINOR ENSMUSG00000029516 Cit ENSMUST00000123736 ENSMUSP00000134875 TRANSLATION nonsense_mediated_decay start - 1 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0128 - -2.0 MINOR ENSMUSG00000029516 Cit ENSMUST00000146387 - NO_TRANSLATION retained_intron ENSMUSG00000029516 Cit ENSMUST00000147479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029516 Cit ENSMUST00000102560 ENSMUSP00000099620 TRANSLATION protein_coding - - 5 2070.0 3.0 6.61 17.8 451.6 0.0 -4,-2 0.8865 46 15.0 ALTERNATIVE:1 ENSMUSG00000029516 Cit ENSMUST00000051704 ENSMUSP00000062049 TRANSLATION protein_coding - CCDS19597.1 1 2055.0 3.0 6.61 14.8 451.6 0.0 -4,-2 1.0 46 14.284 PRINCIPAL:4 ENSMUSG00000029516 Cit ENSMUST00000139881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034724 Cnot6l ENSMUST00000129646 ENSMUSP00000123653 TRANSLATION protein_coding stop - 5 130.0 0.0 2.83 0.0 45.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034724 Cnot6l ENSMUST00000122003 ENSMUSP00000113821 TRANSLATION protein_coding - - 1 435.0 0.0 7.48 1.0 89.7 0.0 -4,-5 0.0037 5 7.812 MINOR ENSMUSG00000034724 Cnot6l ENSMUST00000154500 ENSMUSP00000116326 TRANSLATION protein_coding stop - 5 55.0 0.0 0.58 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034724 Cnot6l ENSMUST00000137066 - NO_TRANSLATION retained_intron ENSMUSG00000034724 Cnot6l ENSMUST00000137207 ENSMUSP00000121627 TRANSLATION protein_coding stop - 3 87.0 0.0 1.58 0.0 30.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034724 Cnot6l ENSMUST00000113005 ENSMUSP00000108629 TRANSLATION protein_coding - CCDS51566.1 5 555.0 0.0 8.8 8.5 115.5 0.0 -4,-5 0.5628 7 13.024 MINOR ENSMUSG00000034724 Cnot6l ENSMUST00000036646 ENSMUSP00000047522 TRANSLATION nonsense_mediated_decay - - 1 46.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034724 Cnot6l ENSMUST00000141383 ENSMUSP00000114436 TRANSLATION protein_coding stop - 5 99.0 0.0 2.08 0.0 37.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034724 Cnot6l ENSMUST00000155901 ENSMUSP00000119415 TRANSLATION protein_coding - CCDS19448.1 1 550.0 0.0 8.8 30.3 115.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000034724 Cnot6l ENSMUST00000152490 - NO_TRANSLATION retained_intron ENSMUSG00000038181 Chpf2 ENSMUST00000198521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038181 Chpf2 ENSMUST00000197566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038181 Chpf2 ENSMUST00000088295 ENSMUSP00000085633 TRANSLATION protein_coding - CCDS51436.1 2 768.0 0.0 4.35 0.1 490.7 0.0 -1,-4 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000038181 Chpf2 ENSMUST00000121863 ENSMUSP00000112804 TRANSLATION protein_coding - CCDS51436.1 5 768.0 0.0 4.35 0.1 490.7 0.0 -1,-4 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000038181 Chpf2 ENSMUST00000197318 ENSMUSP00000143185 TRANSLATION protein_coding stop - 3 74.0 0.0 1.75 0.0 71.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038181 Chpf2 ENSMUST00000197933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029207 Apbb2 ENSMUST00000160103 ENSMUSP00000123766 TRANSLATION protein_coding stop - 2 93.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029207 Apbb2 ENSMUST00000161879 ENSMUSP00000125550 TRANSLATION protein_coding stop - 5 102.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029207 Apbb2 ENSMUST00000201776 - NO_TRANSLATION retained_intron ENSMUSG00000029207 Apbb2 ENSMUST00000162366 ENSMUSP00000125116 TRANSLATION protein_coding - CCDS80292.1 1 736.0 0.0 7.05 6.0 199.4 0.0 -4,-6 0.8213 12 9.596 MINOR ENSMUSG00000029207 Apbb2 ENSMUST00000162349 ENSMUSP00000123752 TRANSLATION protein_coding - CCDS51510.1 5 760.0 0.0 7.05 10.4 202.0 0.0 -4,-6 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000029207 Apbb2 ENSMUST00000161771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029207 Apbb2 ENSMUST00000162994 ENSMUSP00000125603 TRANSLATION protein_coding stop - 2 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029207 Apbb2 ENSMUST00000159357 ENSMUSP00000124127 TRANSLATION protein_coding stop - 5 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000029207 Apbb2 ENSMUST00000162401 - NO_TRANSLATION retained_intron ENSMUSG00000029207 Apbb2 ENSMUST00000160870 ENSMUSP00000123978 TRANSLATION protein_coding - CCDS57345.1 1 758.0 0.0 7.05 8.9 199.4 0.0 -4,-6 0.971 14 10.52 ALTERNATIVE:1 ENSMUSG00000029207 Apbb2 ENSMUST00000159847 - NO_TRANSLATION retained_intron ENSMUSG00000029207 Apbb2 ENSMUST00000161716 ENSMUSP00000124350 TRANSLATION protein_coding stop - 5 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0064 - -2.0 MINOR ENSMUSG00000029207 Apbb2 ENSMUST00000162955 - NO_TRANSLATION retained_intron ENSMUSG00000029207 Apbb2 ENSMUST00000160063 ENSMUSP00000123778 TRANSLATION nonsense_mediated_decay - - 5 510.0 0.0 2.8 0.0 99.4 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000029207 Apbb2 ENSMUST00000162382 ENSMUSP00000124139 TRANSLATION protein_coding stop - 3 107.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029207 Apbb2 ENSMUST00000161936 - NO_TRANSLATION retained_intron ENSMUSG00000029207 Apbb2 ENSMUST00000160185 - NO_TRANSLATION retained_intron ENSMUSG00000029207 Apbb2 ENSMUST00000159786 ENSMUSP00000125211 TRANSLATION protein_coding - CCDS57344.1 1 737.0 0.0 7.05 6.0 199.4 0.0 -4,-6 0.8233 13 9.596 MINOR ENSMUSG00000029207 Apbb2 ENSMUST00000160775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029207 Apbb2 ENSMUST00000159512 ENSMUSP00000124807 TRANSLATION protein_coding - CCDS57346.1 1 738.0 0.0 7.05 6.0 199.4 0.0 -4,-6 0.8275 13 9.596 MINOR ENSMUSG00000029730 Mcm7 ENSMUST00000147920 ENSMUSP00000116169 TRANSLATION protein_coding stop - 3 6.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0208 - -2.0 MINOR ENSMUSG00000029730 Mcm7 ENSMUST00000000505 ENSMUSP00000000505 TRANSLATION protein_coding - CCDS19793.1 1 719.0 18.0 14.792 22.9 640.6 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000029730 Mcm7 ENSMUST00000148879 ENSMUSP00000116131 TRANSLATION protein_coding - - 5 389.0 4.0 9.226 0.0 195.0 0.0 -4,-5 0.0006 9 0.0 MINOR ENSMUSG00000029730 Mcm7 ENSMUST00000139223 - NO_TRANSLATION retained_intron ENSMUSG00000029730 Mcm7 ENSMUST00000125316 - NO_TRANSLATION retained_intron ENSMUSG00000029730 Mcm7 ENSMUST00000155902 ENSMUSP00000120243 TRANSLATION protein_coding stop - 5 110.0 4.0 3.166 0.0 53.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029730 Mcm7 ENSMUST00000148094 ENSMUSP00000121344 TRANSLATION protein_coding stop - 2 50.0 0.0 1.416 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029730 Mcm7 ENSMUST00000139983 ENSMUSP00000121446 TRANSLATION protein_coding stop - 3 110.0 4.0 3.166 0.0 53.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029730 Mcm7 ENSMUST00000142254 - NO_TRANSLATION retained_intron ENSMUSG00000029730 Mcm7 ENSMUST00000153867 ENSMUSP00000121566 TRANSLATION protein_coding stop - 5 142.0 4.0 4.246 0.0 86.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029480 Dhx37 ENSMUST00000169485 ENSMUSP00000131734 TRANSLATION protein_coding - CCDS19685.1 1 1150.0 10.0 17.79 1.6 234.7 0.0 -4,-2 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000029480 Dhx37 ENSMUST00000196371 ENSMUSP00000143479 TRANSLATION protein_coding start - 3 76.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029480 Dhx37 ENSMUST00000198746 ENSMUSP00000143474 TRANSLATION nonsense_mediated_decay start - 5 173.0 0.0 3.75 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000029480 Dhx37 ENSMUST00000196444 - NO_TRANSLATION retained_intron ENSMUSG00000029147 Ppm1g ENSMUST00000201407 ENSMUSP00000144556 TRANSLATION protein_coding start - 3 194.0 0.0 0.3875 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029147 Ppm1g ENSMUST00000031032 ENSMUSP00000031032 TRANSLATION protein_coding - CCDS19179.1 1 542.0 12.0 4.9475 9.6 250.8 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000029147 Ppm1g ENSMUST00000200740 - NO_TRANSLATION retained_intron ENSMUSG00000029147 Ppm1g ENSMUST00000202294 ENSMUSP00000144644 TRANSLATION protein_coding - - 5 435.0 12.0 4.7825 0.0 250.8 0.0 -4,-5 0.0251 14 17.67 MINOR ENSMUSG00000029147 Ppm1g ENSMUST00000200778 ENSMUSP00000144094 TRANSLATION protein_coding start/stop - 5 230.0 5.0 1.7175 0.0 34.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029147 Ppm1g ENSMUST00000202402 - NO_TRANSLATION retained_intron ENSMUSG00000029380 Cxcl1 ENSMUST00000031327 ENSMUSP00000031327 TRANSLATION protein_coding - CCDS39143.1 1 96.0 0.0 2.05 0.1 56.5 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029380 Cxcl1 ENSMUST00000201245 - NO_TRANSLATION retained_intron ENSMUSG00000072720 Myo18b ENSMUST00000086617 ENSMUSP00000083810 TRANSLATION protein_coding - CCDS51618.1 5 2605.0 0.0 11.1175 0.0 311.2 0.0 -4,-5 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000072720 Myo18b ENSMUST00000182189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072720 Myo18b ENSMUST00000183029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072720 Myo18b ENSMUST00000183273 ENSMUSP00000138689 TRANSLATION nonsense_mediated_decay start - 1 75.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056413 Adap1 ENSMUST00000123748 - NO_TRANSLATION retained_intron ENSMUSG00000056413 Adap1 ENSMUST00000156815 - NO_TRANSLATION retained_intron ENSMUSG00000056413 Adap1 ENSMUST00000151450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056413 Adap1 ENSMUST00000110865 ENSMUSP00000106489 TRANSLATION protein_coding - CCDS19806.2 5 374.0 4.0 9.08 25.3 200.7 0.0 -4,-7 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000056413 Adap1 ENSMUST00000126762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056413 Adap1 ENSMUST00000196271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029145 Eif2b4 ENSMUST00000200977 ENSMUSP00000143975 TRANSLATION protein_coding start - 5 63.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029145 Eif2b4 ENSMUST00000202468 - NO_TRANSLATION retained_intron ENSMUSG00000029145 Eif2b4 ENSMUST00000200983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029145 Eif2b4 ENSMUST00000166769 ENSMUSP00000130880 TRANSLATION protein_coding - CCDS51457.1 5 544.0 0.0 9.42 6.7 315.9 0.0 -3,-1 0.7666 13 10.139 ALTERNATIVE:1 ENSMUSG00000029145 Eif2b4 ENSMUST00000200929 ENSMUSP00000143826 TRANSLATION protein_coding start - 3 57.0 0.0 0.5 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029145 Eif2b4 ENSMUST00000202758 ENSMUSP00000144361 TRANSLATION protein_coding - - 5 566.0 0.0 9.42 0.0 315.9 0.0 -4,-5 0.0253 13 8.0 MINOR ENSMUSG00000029145 Eif2b4 ENSMUST00000200741 ENSMUSP00000144563 TRANSLATION protein_coding start/stop - 5 163.0 0.0 4.74 0.0 110.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029145 Eif2b4 ENSMUST00000200724 ENSMUSP00000144393 TRANSLATION protein_coding start - 5 245.0 0.0 3.93 0.0 158.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000029145 Eif2b4 ENSMUST00000077693 ENSMUSP00000076875 TRANSLATION protein_coding - CCDS19176.1 1 524.0 0.0 9.42 9.0 315.9 0.0 -4,-5 1.0 13 11.0 PRINCIPAL:4 ENSMUSG00000029145 Eif2b4 ENSMUST00000202616 - NO_TRANSLATION retained_intron ENSMUSG00000029145 Eif2b4 ENSMUST00000201154 ENSMUSP00000143802 TRANSLATION protein_coding stop - 3 100.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0 1 -2.0 MINOR ENSMUSG00000029145 Eif2b4 ENSMUST00000114603 ENSMUSP00000110250 TRANSLATION protein_coding - CCDS51457.1 1 544.0 0.0 9.42 6.7 315.9 0.0 -3,-1 0.7666 13 10.139 ALTERNATIVE:1 ENSMUSG00000029536 Gatc ENSMUST00000139167 ENSMUSP00000115090 TRANSLATION protein_coding - CCDS19588.1 1 155.0 0.0 2.4 0.4 38.7 0.0 -4,0 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000033219 Gm9758 ENSMUST00000035980 ENSMUSP00000041597 TRANSLATION protein_coding - CCDS51416.1 1 255.0 0.0 2.25 0.0 98.9 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033219 Gm9758 ENSMUST00000154544 - NO_TRANSLATION retained_intron ENSMUSG00000044221 Grsf1 ENSMUST00000150438 ENSMUSP00000115589 TRANSLATION protein_coding stop - 5 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044221 Grsf1 ENSMUST00000078945 ENSMUSP00000077972 TRANSLATION protein_coding - CCDS19404.1 1 479.0 0.0 7.85 7.8 42.9 0.0 -3,-1 1.0 10 10.0 PRINCIPAL:3 ENSMUSG00000044221 Grsf1 ENSMUST00000137725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044221 Grsf1 ENSMUST00000133532 ENSMUSP00000114732 TRANSLATION protein_coding stop - 3 57.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044221 Grsf1 ENSMUST00000113234 ENSMUSP00000108860 TRANSLATION protein_coding - CCDS51540.1 1 362.0 0.0 7.85 5.8 42.9 0.0 -4,-5 0.7933 7 9.412 ALTERNATIVE:1 ENSMUSG00000044221 Grsf1 ENSMUST00000130408 - NO_TRANSLATION retained_intron ENSMUSG00000044221 Grsf1 ENSMUST00000153565 ENSMUSP00000123051 TRANSLATION protein_coding stop - 5 137.0 0.0 3.8 0.0 42.9 0.0 -4,-5 0.0025 1 -2.0 MINOR ENSMUSG00000029126 Nsg1 ENSMUST00000201134 ENSMUSP00000144585 TRANSLATION protein_coding stop - 3 33.0 0.0 0.0 0.0 50.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029126 Nsg1 ENSMUST00000201363 ENSMUSP00000144396 TRANSLATION protein_coding - CCDS19251.1 2 185.0 0.0 1.0 31.3 284.5 1.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000029126 Nsg1 ENSMUST00000201341 ENSMUSP00000144641 TRANSLATION protein_coding stop - 2 117.0 0.0 1.0 0.0 189.3 1.0 -4,-5 0.0519 - -2.0 MINOR ENSMUSG00000029126 Nsg1 ENSMUST00000031009 ENSMUSP00000031009 TRANSLATION protein_coding - CCDS19251.1 1 185.0 0.0 1.0 31.3 284.5 1.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000029126 Nsg1 ENSMUST00000201415 ENSMUSP00000143921 TRANSLATION protein_coding - - 5 146.0 0.0 1.0 1.0 202.7 1.0 -4,-6 0.0627 1 7.092 MINOR ENSMUSG00000029126 Nsg1 ENSMUST00000202129 ENSMUSP00000144182 TRANSLATION protein_coding start - 3 52.0 0.0 0.0 0.0 50.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029126 Nsg1 ENSMUST00000202831 - NO_TRANSLATION retained_intron ENSMUSG00000062372 Otof ENSMUST00000114747 ENSMUSP00000110395 TRANSLATION protein_coding - CCDS51452.1 1 1992.0 13.0 5.25 3.9 517.2 1.0 -4,-7 0.7731 3 18.442 MINOR ENSMUSG00000062372 Otof ENSMUST00000074171 ENSMUSP00000073803 TRANSLATION protein_coding - CCDS19157.1 1 1997.0 13.0 5.25 7.5 524.7 1.0 -4,-7 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000062372 Otof ENSMUST00000128177 - NO_TRANSLATION retained_intron ENSMUSG00000062372 Otof ENSMUST00000150734 - NO_TRANSLATION retained_intron ENSMUSG00000062372 Otof ENSMUST00000144125 - NO_TRANSLATION retained_intron ENSMUSG00000042985 Upk3b ENSMUST00000062606 ENSMUSP00000062312 TRANSLATION protein_coding - CCDS19750.1 1 276.0 0.0 1.82 0.1 0.0 0.0 4,-1 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000095996 Pramel60 ENSMUST00000201663 ENSMUSP00000144358 TRANSLATION protein_coding - CCDS51558.1 1 481.0 0.0 2.2 0.4 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000028986 Klhl7 ENSMUST00000200116 ENSMUSP00000143000 TRANSLATION nonsense_mediated_decay - - 1 422.0 0.0 7.7 0.0 220.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000028986 Klhl7 ENSMUST00000163409 ENSMUSP00000129461 TRANSLATION protein_coding - CCDS51432.1 2 473.0 0.0 8.7 0.0 295.3 0.0 -4,-5 0.026 4 4.602 MINOR ENSMUSG00000028986 Klhl7 ENSMUST00000199530 - NO_TRANSLATION retained_intron ENSMUSG00000028986 Klhl7 ENSMUST00000030841 ENSMUSP00000030841 TRANSLATION protein_coding - CCDS19114.1 1 586.0 0.0 10.9 25.0 345.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000054720 Lrrc8c ENSMUST00000153754 ENSMUSP00000114899 TRANSLATION protein_coding stop - 5 170.0 0.0 1.3 0.0 278.9 2.0 -4,-7 0.0012 1 -2.0 MINOR ENSMUSG00000054720 Lrrc8c ENSMUST00000150981 ENSMUSP00000122573 TRANSLATION protein_coding stop - 3 32.0 0.0 0.8 0.0 53.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000054720 Lrrc8c ENSMUST00000153955 - NO_TRANSLATION retained_intron ENSMUSG00000054720 Lrrc8c ENSMUST00000067924 ENSMUSP00000066015 TRANSLATION protein_coding - CCDS19493.1 1 803.0 0.0 1.8 23.4 538.2 3.0 -4,-7 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000004530 Coro1c ENSMUST00000164980 ENSMUSP00000129314 TRANSLATION nonsense_mediated_decay - - 1 159.0 0.0 3.5 0.0 140.8 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000004530 Coro1c ENSMUST00000171630 - NO_TRANSLATION retained_intron ENSMUSG00000004530 Coro1c ENSMUST00000163264 ENSMUSP00000129457 TRANSLATION protein_coding stop - 2 85.0 0.0 1.75 0.0 113.9 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000004530 Coro1c ENSMUST00000172016 - NO_TRANSLATION retained_intron ENSMUSG00000004530 Coro1c ENSMUST00000168399 ENSMUSP00000132504 TRANSLATION protein_coding stop - 5 66.0 0.0 1.0 0.0 109.7 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000004530 Coro1c ENSMUST00000168634 - NO_TRANSLATION retained_intron ENSMUSG00000004530 Coro1c ENSMUST00000163995 - NO_TRANSLATION retained_intron ENSMUSG00000004530 Coro1c ENSMUST00000004646 ENSMUSP00000004646 TRANSLATION protein_coding - CCDS19555.1 1 474.0 0.0 8.88 31.8 249.9 0.0 -4,-2 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000004530 Coro1c ENSMUST00000111283 - NO_TRANSLATION retained_intron ENSMUSG00000004530 Coro1c ENSMUST00000168493 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004530 Coro1c ENSMUST00000166647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059645 Gm7361 ENSMUST00000074148 ENSMUSP00000073781 TRANSLATION protein_coding - CCDS59673.1 1 267.0 0.0 2.25 0.0 85.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038384 Setd1b ENSMUST00000100731 - NO_TRANSLATION retained_intron ENSMUSG00000038384 Setd1b ENSMUST00000173221 - NO_TRANSLATION retained_intron ENSMUSG00000038384 Setd1b ENSMUST00000056053 ENSMUSP00000134686 TRANSLATION protein_coding - CCDS59684.1 5 1985.0 19.0 4.8 0.0 198.3 0.0 -4,-6 0.7717 16 14.0 ALTERNATIVE:2 ENSMUSG00000038384 Setd1b ENSMUST00000162839 ENSMUSP00000134353 TRANSLATION protein_coding start - 2 87.0 11.0 2.0 0.0 32.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038384 Setd1b ENSMUST00000163030 ENSMUSP00000133933 TRANSLATION protein_coding - CCDS59684.1 5 1985.0 19.0 4.8 0.0 198.3 0.0 -4,-6 0.7717 16 14.0 ALTERNATIVE:2 ENSMUSG00000038384 Setd1b ENSMUST00000174836 ENSMUSP00000134461 TRANSLATION protein_coding - - 5 1944.0 19.0 4.8 0.0 198.3 0.0 -4,-6 1.0 16 14.0 PRINCIPAL:4 ENSMUSG00000029660 Tex26 ENSMUST00000202920 ENSMUSP00000143863 TRANSLATION protein_coding - CCDS80477.1 1 211.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.219 - 0.0 ALTERNATIVE:2 ENSMUSG00000029660 Tex26 ENSMUST00000202677 ENSMUSP00000144077 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0286 - -2.0 MINOR ENSMUSG00000029660 Tex26 ENSMUST00000031667 ENSMUSP00000031667 TRANSLATION protein_coding - CCDS80476.1 1 295.0 0.0 0.0 0.3 0.0 0.0 -4,-6 0.4828 - 0.0 ALTERNATIVE:2 ENSMUSG00000029660 Tex26 ENSMUST00000201683 ENSMUSP00000143851 TRANSLATION protein_coding - CCDS51707.1 1 296.0 0.0 0.0 0.3 0.0 0.0 -4,-6 0.855 - 0.0 PRINCIPAL:2 ENSMUSG00000029660 Tex26 ENSMUST00000200985 ENSMUSP00000144687 TRANSLATION nonsense_mediated_decay - - 1 88.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0286 - -2.0 MINOR ENSMUSG00000029660 Tex26 ENSMUST00000201610 ENSMUSP00000143837 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0286 - -2.0 MINOR ENSMUSG00000029660 Tex26 ENSMUST00000201454 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096045 Gm21698 ENSMUST00000178487 ENSMUSP00000137405 TRANSLATION protein_coding start - 5 221.0 0.0 2.05 0.0 83.5 0.0 -4,-5 0.0202 - -2.0 MINOR ENSMUSG00000096045 Gm21698 ENSMUST00000191203 ENSMUSP00000140294 TRANSLATION protein_coding - - 5 267.0 0.0 2.05 0.0 83.5 0.0 -4,-2 0.7666 - 12.0 PRINCIPAL:1 ENSMUSG00000029446 Psph ENSMUST00000178244 - NO_TRANSLATION retained_intron ENSMUSG00000029446 Psph ENSMUST00000136280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029446 Psph ENSMUST00000118268 ENSMUSP00000113671 TRANSLATION protein_coding - - 5 101.0 6.0 2.764 0.0 0.0 0.0 -4,-6 0.0 3 1.998 MINOR ENSMUSG00000029446 Psph ENSMUST00000201394 ENSMUSP00000144667 TRANSLATION protein_coding stop - 3 113.0 8.0 3.25 0.0 28.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029446 Psph ENSMUST00000202374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029446 Psph ENSMUST00000031399 ENSMUSP00000031399 TRANSLATION protein_coding - CCDS19699.1 1 225.0 12.0 6.08 29.8 59.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000029446 Psph ENSMUST00000201022 - NO_TRANSLATION retained_intron ENSMUSG00000029446 Psph ENSMUST00000136507 ENSMUSP00000116292 TRANSLATION protein_coding stop - 5 60.0 6.0 1.5 0.0 0.0 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000029208 Guf1 ENSMUST00000031113 ENSMUSP00000031113 TRANSLATION protein_coding - CCDS80296.1 1 563.0 14.0 12.3 0.0 421.6 0.0 0,2 0.0611 11 11.214 MINOR ENSMUSG00000029208 Guf1 ENSMUST00000125543 - NO_TRANSLATION retained_intron ENSMUSG00000029208 Guf1 ENSMUST00000173205 ENSMUSP00000133467 TRANSLATION protein_coding start - 5 590.0 14.0 13.63 0.0 429.6 0.0 -4,-2 0.0115 12 -2.0 MINOR ENSMUSG00000029208 Guf1 ENSMUST00000132169 ENSMUSP00000144290 TRANSLATION nonsense_mediated_decay - - 1 302.0 14.0 6.0 0.0 182.5 0.0 0,2 0.0047 - -2.0 MINOR ENSMUSG00000029208 Guf1 ENSMUST00000087228 ENSMUSP00000084480 TRANSLATION protein_coding - CCDS19322.1 1 651.0 14.0 14.63 0.0 457.0 0.0 0,2 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000029208 Guf1 ENSMUST00000154728 ENSMUSP00000144246 TRANSLATION nonsense_mediated_decay - - 1 302.0 14.0 6.0 0.0 182.5 0.0 0,2 0.0047 6 -2.0 MINOR ENSMUSG00000029208 Guf1 ENSMUST00000202180 - NO_TRANSLATION retained_intron ENSMUSG00000029208 Guf1 ENSMUST00000125660 - NO_TRANSLATION retained_intron ENSMUSG00000029208 Guf1 ENSMUST00000144363 ENSMUSP00000114707 TRANSLATION nonsense_mediated_decay start - 2 296.0 14.0 6.0 0.0 182.5 0.0 -3,1 0.0008 6 -2.0 MINOR ENSMUSG00000003623 Crot ENSMUST00000146115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003623 Crot ENSMUST00000003720 ENSMUSP00000003720 TRANSLATION protein_coding - CCDS19087.1 1 612.0 13.0 15.5 28.0 580.3 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000003623 Crot ENSMUST00000157024 - NO_TRANSLATION retained_intron ENSMUSG00000029176 Anapc4 ENSMUST00000145349 - NO_TRANSLATION retained_intron ENSMUSG00000029176 Anapc4 ENSMUST00000141641 - NO_TRANSLATION retained_intron ENSMUSG00000029176 Anapc4 ENSMUST00000138629 - NO_TRANSLATION retained_intron ENSMUSG00000029176 Anapc4 ENSMUST00000131750 - NO_TRANSLATION retained_intron ENSMUSG00000029176 Anapc4 ENSMUST00000130536 - NO_TRANSLATION retained_intron ENSMUSG00000029176 Anapc4 ENSMUST00000199850 - NO_TRANSLATION retained_intron ENSMUSG00000029176 Anapc4 ENSMUST00000142035 - NO_TRANSLATION retained_intron ENSMUSG00000029176 Anapc4 ENSMUST00000144574 ENSMUSP00000114475 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 2.0 0.0 61.6 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000029176 Anapc4 ENSMUST00000031072 ENSMUSP00000031072 TRANSLATION protein_coding - CCDS19290.1 1 807.0 0.0 20.305 0.0 285.2 0.0 -4,-7 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000029176 Anapc4 ENSMUST00000150682 ENSMUSP00000143745 TRANSLATION protein_coding start/stop - 5 151.0 0.0 4.5 0.0 58.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029176 Anapc4 ENSMUST00000154980 - NO_TRANSLATION retained_intron ENSMUSG00000029176 Anapc4 ENSMUST00000198207 ENSMUSP00000143055 TRANSLATION protein_coding start/stop - 5 171.0 0.0 5.0 0.0 95.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029715 Pop7 ENSMUST00000031728 ENSMUSP00000031728 TRANSLATION protein_coding - CCDS19768.1 1 140.0 0.0 1.0 12.5 67.0 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000029715 Pop7 ENSMUST00000111035 ENSMUSP00000106664 TRANSLATION protein_coding - CCDS19768.1 - 140.0 0.0 1.0 12.5 67.0 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000029128 Rab28 ENSMUST00000200702 - NO_TRANSLATION retained_intron ENSMUSG00000029128 Rab28 ENSMUST00000201422 ENSMUSP00000144541 TRANSLATION protein_coding - CCDS80272.1 5 220.0 22.0 5.25 25.2 133.6 0.0 -4,-5 0.9706 7 16.916 ALTERNATIVE:1 ENSMUSG00000029128 Rab28 ENSMUST00000201473 - NO_TRANSLATION retained_intron ENSMUSG00000029128 Rab28 ENSMUST00000031011 ENSMUSP00000031011 TRANSLATION protein_coding - CCDS19258.1 1 221.0 22.0 5.25 34.2 133.6 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:4 ENSMUSG00000029128 Rab28 ENSMUST00000202913 ENSMUSP00000144440 TRANSLATION protein_coding - CCDS80271.1 1 193.0 22.0 5.25 4.2 133.6 0.0 -4,-5 0.2593 6 14.384 MINOR ENSMUSG00000023106 Denr ENSMUST00000198321 - NO_TRANSLATION retained_intron ENSMUSG00000023106 Denr ENSMUST00000023869 ENSMUSP00000023869 TRANSLATION protein_coding - CCDS39275.1 1 198.0 2.0 4.18 24.0 61.9 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000023106 Denr ENSMUST00000171639 - NO_TRANSLATION retained_intron ENSMUSG00000023106 Denr ENSMUST00000168899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023106 Denr ENSMUST00000166233 ENSMUSP00000126174 TRANSLATION protein_coding stop - 3 182.0 2.0 3.68 0.0 61.9 0.0 -4,-5 0.0014 3 -2.0 MINOR ENSMUSG00000058291 Zfp68 ENSMUST00000199066 - NO_TRANSLATION retained_intron ENSMUSG00000058291 Zfp68 ENSMUST00000129832 ENSMUSP00000117037 TRANSLATION protein_coding stop - 2 40.0 0.0 1.0 0.0 59.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000058291 Zfp68 ENSMUST00000110905 ENSMUSP00000106530 TRANSLATION protein_coding - CCDS19801.1 1 606.0 36.0 1.8 0.3 217.6 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000058291 Zfp68 ENSMUST00000063262 ENSMUSP00000069615 TRANSLATION protein_coding - CCDS19801.1 1 606.0 36.0 1.8 0.3 217.6 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000058291 Zfp68 ENSMUST00000197654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058291 Zfp68 ENSMUST00000085852 ENSMUSP00000083013 TRANSLATION protein_coding - CCDS39347.1 1 568.0 36.0 0.8 0.3 142.7 0.0 -4,-5 0.0969 1 10.17 MINOR ENSMUSG00000113373 Gm55746 ENSMUST00000212997 ENSMUSP00000148621 TRANSLATION protein_coding - - 5 45.0 0.0 1.0 0.0 0.0 0.0 -1,-5 0.7008 - 6.0 PRINCIPAL:1 ENSMUSG00000045790 Ccdc149 ENSMUST00000213027 ENSMUSP00000148688 TRANSLATION protein_coding start - 5 349.0 0.0 0.0 0.0 196.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000045790 Ccdc149 ENSMUST00000198008 ENSMUSP00000143041 TRANSLATION protein_coding - - 5 152.0 0.0 0.0 0.0 104.3 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000045790 Ccdc149 ENSMUST00000059428 ENSMUSP00000062411 TRANSLATION protein_coding - CCDS57343.1 5 524.0 0.0 0.0 4.0 377.6 0.0 -4,-5 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000104713 Gbp6 ENSMUST00000200045 ENSMUSP00000142994 TRANSLATION nonsense_mediated_decay - - 1 62.0 7.0 1.0 0.0 65.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000104713 Gbp6 ENSMUST00000196520 ENSMUSP00000142518 TRANSLATION protein_coding - CCDS19492.1 5 611.0 16.0 9.6 0.0 768.3 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000104713 Gbp6 ENSMUST00000199944 - NO_TRANSLATION retained_intron ENSMUSG00000070690 Albfm1 ENSMUST00000094615 ENSMUSP00000092198 TRANSLATION protein_coding - CCDS57355.1 5 620.0 0.0 8.535 0.4 450.0 0.0 -3,-6 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000070690 Albfm1 ENSMUST00000200765 ENSMUSP00000144527 TRANSLATION protein_coding - - 5 355.0 0.0 4.16 0.0 246.3 0.0 -3,-6 0.0 2 0.0 MINOR ENSMUSG00000000568 Hnrnpd ENSMUST00000164833 ENSMUSP00000131785 TRANSLATION nonsense_mediated_decay start - 5 131.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000000568 Hnrnpd ENSMUST00000072750 ENSMUSP00000072533 TRANSLATION protein_coding - CCDS51571.1 3 287.0 0.0 4.48 5.3 178.3 0.0 -4,-5 0.7197 14 8.568 MINOR ENSMUSG00000000568 Hnrnpd ENSMUST00000171786 ENSMUSP00000125984 TRANSLATION protein_coding stop - 5 107.0 0.0 2.63 0.0 65.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000000568 Hnrnpd ENSMUST00000171106 ENSMUSP00000131262 TRANSLATION nonsense_mediated_decay start - 5 216.0 0.0 4.678 0.0 126.5 0.0 -4,-5 0.0025 14 -2.0 MINOR ENSMUSG00000000568 Hnrnpd ENSMUST00000170912 ENSMUSP00000143218 TRANSLATION protein_coding stop - 5 25.0 0.0 0.75 0.0 29.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000000568 Hnrnpd ENSMUST00000168396 ENSMUSP00000131859 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 0.0 0.0 51.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000568 Hnrnpd ENSMUST00000171640 ENSMUSP00000127833 TRANSLATION nonsense_mediated_decay start - 5 150.0 0.0 2.98 0.0 61.1 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000000568 Hnrnpd ENSMUST00000172361 ENSMUSP00000132735 TRANSLATION protein_coding - CCDS39182.1 1 355.0 0.0 4.978 6.5 178.3 0.0 -4,-5 1.0 17 10.0 PRINCIPAL:4 ENSMUSG00000000568 Hnrnpd ENSMUST00000019128 ENSMUSP00000019128 TRANSLATION protein_coding - CCDS39181.1 1 306.0 0.0 4.978 5.3 178.3 0.0 -4,-5 0.8523 17 9.564 ALTERNATIVE:1 ENSMUSG00000000568 Hnrnpd ENSMUST00000112939 ENSMUSP00000108561 TRANSLATION protein_coding - CCDS39180.1 5 336.0 0.0 4.48 5.4 178.3 0.0 -4,-5 0.7849 14 8.604 MINOR ENSMUSG00000000568 Hnrnpd ENSMUST00000170654 - NO_TRANSLATION retained_intron ENSMUSG00000072889 Nfxl1 ENSMUST00000146761 - NO_TRANSLATION retained_intron ENSMUSG00000072889 Nfxl1 ENSMUST00000087216 ENSMUSP00000084467 TRANSLATION protein_coding - CCDS39109.1 5 918.0 8.0 0.0 6.2 147.1 0.0 -4,-2 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000072889 Nfxl1 ENSMUST00000074948 ENSMUSP00000074481 TRANSLATION protein_coding stop - 1 346.0 8.0 0.0 0.0 44.7 0.0 -4,-2 0.0018 4 -2.0 MINOR ENSMUSG00000072889 Nfxl1 ENSMUST00000149340 - NO_TRANSLATION retained_intron ENSMUSG00000072889 Nfxl1 ENSMUST00000153882 - NO_TRANSLATION retained_intron ENSMUSG00000072889 Nfxl1 ENSMUST00000134452 - NO_TRANSLATION retained_intron ENSMUSG00000072889 Nfxl1 ENSMUST00000198977 - NO_TRANSLATION retained_intron ENSMUSG00000072889 Nfxl1 ENSMUST00000149393 - NO_TRANSLATION retained_intron ENSMUSG00000072889 Nfxl1 ENSMUST00000135318 ENSMUSP00000114355 TRANSLATION nonsense_mediated_decay - - 1 500.0 8.0 0.0 0.0 94.7 0.0 -4,-2 0.0036 4 -2.0 MINOR ENSMUSG00000029290 Zfp326 ENSMUST00000136558 - NO_TRANSLATION retained_intron ENSMUSG00000029290 Zfp326 ENSMUST00000135374 - NO_TRANSLATION retained_intron ENSMUSG00000029290 Zfp326 ENSMUST00000138615 ENSMUSP00000122499 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029290 Zfp326 ENSMUST00000150440 ENSMUSP00000118976 TRANSLATION protein_coding stop - 5 415.0 4.0 2.48 0.0 245.3 0.0 -4,-5 0.0599 11 -2.0 MINOR ENSMUSG00000029290 Zfp326 ENSMUST00000147683 - NO_TRANSLATION retained_intron ENSMUSG00000029290 Zfp326 ENSMUST00000150109 - NO_TRANSLATION retained_intron ENSMUSG00000029290 Zfp326 ENSMUST00000133155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029290 Zfp326 ENSMUST00000135215 - NO_TRANSLATION retained_intron ENSMUSG00000029290 Zfp326 ENSMUST00000031227 ENSMUSP00000031227 TRANSLATION protein_coding - CCDS19496.1 1 580.0 4.0 2.48 0.0 245.3 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000001622 Csn3 ENSMUST00000001667 ENSMUSP00000001667 TRANSLATION protein_coding - CCDS19396.1 1 181.0 0.0 0.0 0.1 207.5 0.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000001622 Csn3 ENSMUST00000140690 - NO_TRANSLATION retained_intron ENSMUSG00000001622 Csn3 ENSMUST00000113271 ENSMUSP00000108896 TRANSLATION protein_coding - CCDS19396.1 1 181.0 0.0 0.0 0.1 207.5 0.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000001622 Csn3 ENSMUST00000148793 - NO_TRANSLATION retained_intron ENSMUSG00000001622 Csn3 ENSMUST00000113267 ENSMUSP00000108892 TRANSLATION protein_coding - CCDS19396.1 1 181.0 0.0 0.0 0.1 207.5 0.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000001622 Csn3 ENSMUST00000144929 - NO_TRANSLATION retained_intron ENSMUSG00000066684 Pilrb1 ENSMUST00000110978 ENSMUSP00000106606 TRANSLATION protein_coding - CCDS51675.1 1 224.0 0.0 2.75 0.4 0.0 3.0 1,-2 0.8297 1 6.0 PRINCIPAL:4 ENSMUSG00000066684 Pilrb1 ENSMUST00000198703 ENSMUSP00000142422 TRANSLATION protein_coding start - 3 96.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0092 1 -2.0 MINOR ENSMUSG00000066684 Pilrb1 ENSMUST00000196195 ENSMUSP00000143777 TRANSLATION protein_coding stop - 2 69.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.1086 - -2.0 MINOR ENSMUSG00000066684 Pilrb1 ENSMUST00000197914 ENSMUSP00000142614 TRANSLATION nonsense_mediated_decay start - 2 29.0 0.0 0.0 0.0 0.0 1.0 -1,-5 0.0333 - -2.0 MINOR ENSMUSG00000066684 Pilrb1 ENSMUST00000197403 - NO_TRANSLATION retained_intron ENSMUSG00000066684 Pilrb1 ENSMUST00000199387 ENSMUSP00000143379 TRANSLATION protein_coding - - 1 225.0 0.0 2.75 0.4 0.0 3.0 1,-2 0.7686 1 6.0 ALTERNATIVE:2 ENSMUSG00000058558 Rpl5 ENSMUST00000082223 ENSMUSP00000080854 TRANSLATION protein_coding - CCDS39199.1 1 297.0 0.0 7.75 34.9 448.7 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000058558 Rpl5 ENSMUST00000153590 ENSMUSP00000123474 TRANSLATION protein_coding stop - 3 163.0 0.0 3.5 0.0 253.5 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000058558 Rpl5 ENSMUST00000129944 - NO_TRANSLATION retained_intron ENSMUSG00000058558 Rpl5 ENSMUST00000123183 - NO_TRANSLATION retained_intron ENSMUSG00000058558 Rpl5 ENSMUST00000140659 - NO_TRANSLATION retained_intron ENSMUSG00000058558 Rpl5 ENSMUST00000151767 - NO_TRANSLATION retained_intron ENSMUSG00000029247 Paics ENSMUST00000120912 ENSMUSP00000113483 TRANSLATION protein_coding - CCDS19367.1 1 425.0 25.0 8.25 21.1 318.6 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000029247 Paics ENSMUST00000031160 ENSMUSP00000031160 TRANSLATION protein_coding - CCDS19367.1 1 425.0 25.0 8.25 21.1 318.6 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000029247 Paics ENSMUST00000141687 ENSMUSP00000117027 TRANSLATION protein_coding stop - 5 83.0 8.0 1.33 0.0 55.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029247 Paics ENSMUST00000140051 - NO_TRANSLATION retained_intron ENSMUSG00000029247 Paics ENSMUST00000154688 - NO_TRANSLATION retained_intron ENSMUSG00000029247 Paics ENSMUST00000117536 ENSMUSP00000112879 TRANSLATION protein_coding - CCDS19367.1 5 425.0 25.0 8.25 21.1 318.6 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000029247 Paics ENSMUST00000153648 ENSMUSP00000123558 TRANSLATION nonsense_mediated_decay - - 5 103.0 7.0 1.04 0.0 50.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029112 Nkx1-1 ENSMUST00000173348 ENSMUSP00000133620 TRANSLATION protein_coding - - 5 402.0 0.0 0.4 0.0 73.8 0.0 -4,-6 0.783 - 12.0 PRINCIPAL:1 ENSMUSG00000040584 Abcb1a ENSMUST00000047753 ENSMUSP00000041204 TRANSLATION protein_coding - CCDS19084.1 1 1276.0 0.0 23.5 3.5 824.7 0.0 -4,-5 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000040584 Abcb1a ENSMUST00000145232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040584 Abcb1a ENSMUST00000138138 - NO_TRANSLATION retained_intron ENSMUSG00000040584 Abcb1a ENSMUST00000126846 - NO_TRANSLATION retained_intron ENSMUSG00000029299 Abcg3 ENSMUST00000130644 ENSMUSP00000120179 TRANSLATION protein_coding - - 5 580.0 0.0 9.062 0.0 94.2 5.0 -4,-5 0.0067 8 5.94 MINOR ENSMUSG00000029299 Abcg3 ENSMUST00000031239 ENSMUSP00000031239 TRANSLATION protein_coding - CCDS19488.1 1 650.0 0.0 11.062 0.8 128.5 6.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000023452 Pisd ENSMUST00000200390 ENSMUSP00000142818 TRANSLATION nonsense_mediated_decay - - 5 153.0 0.0 0.9 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023452 Pisd ENSMUST00000142957 ENSMUSP00000119621 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000023452 Pisd ENSMUST00000145759 - NO_TRANSLATION retained_intron ENSMUSG00000023452 Pisd ENSMUST00000071829 ENSMUSP00000071732 TRANSLATION protein_coding - - 5 262.0 0.0 1.12 0.0 110.8 0.0 -4,-6 0.0 2 3.21 MINOR ENSMUSG00000023452 Pisd ENSMUST00000202641 - NO_TRANSLATION retained_intron ENSMUSG00000023452 Pisd ENSMUST00000201980 - NO_TRANSLATION retained_intron ENSMUSG00000023452 Pisd ENSMUST00000202283 ENSMUSP00000144616 TRANSLATION nonsense_mediated_decay - - 5 153.0 0.0 0.9 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000023452 Pisd ENSMUST00000061895 ENSMUSP00000051438 TRANSLATION protein_coding - CCDS19194.1 1 406.0 0.0 2.095 8.2 229.6 0.0 -4,0 0.6208 6 13.532 MINOR ENSMUSG00000023452 Pisd ENSMUST00000138360 - NO_TRANSLATION retained_intron ENSMUSG00000023452 Pisd ENSMUST00000135248 ENSMUSP00000120201 TRANSLATION protein_coding stop - 2 151.0 0.0 1.1 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000023452 Pisd ENSMUST00000120591 ENSMUSP00000112573 TRANSLATION protein_coding - CCDS84866.1 5 375.0 0.0 2.095 19.8 229.6 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000023452 Pisd ENSMUST00000197787 ENSMUSP00000143277 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023452 Pisd ENSMUST00000201314 - NO_TRANSLATION retained_intron ENSMUSG00000023452 Pisd ENSMUST00000142779 ENSMUSP00000122705 TRANSLATION protein_coding start - 5 359.0 0.0 1.495 0.0 163.2 0.0 -4,0 0.0142 5 -2.0 MINOR ENSMUSG00000029408 Abcb9 ENSMUST00000141510 ENSMUSP00000122969 TRANSLATION nonsense_mediated_decay - - 5 268.0 0.0 1.0 0.0 0.0 7.0 1,-2 0.0063 - -2.0 MINOR ENSMUSG00000029408 Abcb9 ENSMUST00000126856 ENSMUSP00000118908 TRANSLATION nonsense_mediated_decay - - 5 268.0 0.0 1.0 0.0 0.0 7.0 1,-2 0.0063 1 -2.0 MINOR ENSMUSG00000029408 Abcb9 ENSMUST00000153433 - NO_TRANSLATION retained_intron ENSMUSG00000029408 Abcb9 ENSMUST00000031354 ENSMUSP00000031354 TRANSLATION protein_coding - CCDS19671.1 1 762.0 12.0 10.33 7.9 313.3 9.0 1,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000029408 Abcb9 ENSMUST00000126970 - NO_TRANSLATION retained_intron ENSMUSG00000029408 Abcb9 ENSMUST00000148392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038276 Asic3 ENSMUST00000049346 ENSMUSP00000039914 TRANSLATION protein_coding - CCDS80225.1 1 440.0 0.0 3.305 0.0 210.5 1.0 -4,-7 0.0065 - 0.0 MINOR ENSMUSG00000038276 Asic3 ENSMUST00000198241 - NO_TRANSLATION retained_intron ENSMUSG00000038276 Asic3 ENSMUST00000196296 ENSMUSP00000143083 TRANSLATION protein_coding - CCDS51433.1 5 530.0 0.0 6.337 9.9 321.1 1.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038276 Asic3 ENSMUST00000197210 - NO_TRANSLATION retained_intron ENSMUSG00000038276 Asic3 ENSMUST00000198442 ENSMUSP00000142593 TRANSLATION nonsense_mediated_decay start - 3 70.0 0.0 2.0 0.0 42.3 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000007457 2310003L06Rik ENSMUST00000007601 ENSMUSP00000007601 TRANSLATION protein_coding stop - 1 495.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.6191 - -2.0 PRINCIPAL:1 ENSMUSG00000029102 Hgfac ENSMUST00000201038 - NO_TRANSLATION retained_intron ENSMUSG00000029102 Hgfac ENSMUST00000202921 ENSMUSP00000144402 TRANSLATION protein_coding start/stop - 3 249.0 4.0 4.1 0.0 177.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000029102 Hgfac ENSMUST00000202573 ENSMUSP00000144344 TRANSLATION protein_coding - - 5 89.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0031 - 0.0 MINOR ENSMUSG00000029102 Hgfac ENSMUST00000202126 - NO_TRANSLATION retained_intron ENSMUSG00000029102 Hgfac ENSMUST00000202168 - NO_TRANSLATION retained_intron ENSMUSG00000029102 Hgfac ENSMUST00000201994 - NO_TRANSLATION retained_intron ENSMUSG00000029102 Hgfac ENSMUST00000030985 ENSMUSP00000030985 TRANSLATION protein_coding - CCDS19223.1 1 653.0 7.0 6.85 1.5 430.5 0.0 1,-2 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000038722 Bud31 ENSMUST00000160075 ENSMUSP00000125564 TRANSLATION protein_coding - CCDS80463.1 2 144.0 2.0 3.5 35.4 0.0 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000038722 Bud31 ENSMUST00000161974 - NO_TRANSLATION retained_intron ENSMUSG00000038722 Bud31 ENSMUST00000162594 ENSMUSP00000125738 TRANSLATION protein_coding - CCDS80463.1 2 144.0 2.0 3.5 35.4 0.0 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000038722 Bud31 ENSMUST00000160004 - NO_TRANSLATION retained_intron ENSMUSG00000038722 Bud31 ENSMUST00000159018 ENSMUSP00000124999 TRANSLATION protein_coding - CCDS80463.1 5 144.0 2.0 3.5 35.4 0.0 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000038722 Bud31 ENSMUST00000160840 - NO_TRANSLATION retained_intron ENSMUSG00000038722 Bud31 ENSMUST00000162308 ENSMUSP00000125590 TRANSLATION protein_coding - CCDS19857.1 1 103.0 2.0 2.5 0.0 0.0 0.0 -4,-5 0.0501 4 6.002 MINOR ENSMUSG00000049691 Nkx3-2 ENSMUST00000060820 ENSMUSP00000051990 TRANSLATION protein_coding - CCDS19259.1 1 333.0 0.0 0.8 9.1 73.0 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067698 Gm10220 ENSMUST00000088236 ENSMUSP00000085569 TRANSLATION protein_coding - CCDS51444.1 5 267.0 0.0 2.05 0.0 82.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057406 Nsd2 ENSMUST00000139845 ENSMUSP00000123460 TRANSLATION nonsense_mediated_decay - - 5 647.0 0.0 3.7 4.6 123.9 0.0 -4,-6 0.4387 - -2.0 MINOR ENSMUSG00000057406 Nsd2 ENSMUST00000137191 ENSMUSP00000122310 TRANSLATION nonsense_mediated_decay - - 5 647.0 0.0 3.7 4.6 123.9 0.0 -4,-6 0.4387 - -2.0 MINOR ENSMUSG00000057406 Nsd2 ENSMUST00000075812 ENSMUSP00000075210 TRANSLATION protein_coding - CCDS51467.1 5 1366.0 52.0 12.8 4.0 300.4 0.0 -4,-6 1.0 19 15.666 PRINCIPAL:4 ENSMUSG00000057406 Nsd2 ENSMUST00000202525 ENSMUSP00000144255 TRANSLATION nonsense_mediated_decay start - 5 272.0 24.0 0.7 0.0 30.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000057406 Nsd2 ENSMUST00000201572 - NO_TRANSLATION retained_intron ENSMUSG00000057406 Nsd2 ENSMUST00000155880 ENSMUSP00000121805 TRANSLATION protein_coding stop - 3 225.0 0.0 0.45 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000057406 Nsd2 ENSMUST00000141416 ENSMUSP00000117233 TRANSLATION nonsense_mediated_decay start - 1 534.0 0.0 3.7 0.0 123.9 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000057406 Nsd2 ENSMUST00000142080 ENSMUSP00000115251 TRANSLATION protein_coding start - 3 167.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057406 Nsd2 ENSMUST00000114399 ENSMUSP00000110041 TRANSLATION protein_coding - - 5 647.0 0.0 3.7 4.6 123.9 0.0 -4,-6 0.4387 10 2.0 MINOR ENSMUSG00000057406 Nsd2 ENSMUST00000114397 ENSMUSP00000110039 TRANSLATION protein_coding - - 1 629.0 0.0 3.7 1.0 123.9 0.0 -4,-6 0.0382 10 0.0 MINOR ENSMUSG00000057406 Nsd2 ENSMUST00000133870 - NO_TRANSLATION retained_intron ENSMUSG00000057406 Nsd2 ENSMUST00000066854 ENSMUSP00000067205 TRANSLATION protein_coding - CCDS51467.1 2 1366.0 52.0 12.8 4.0 300.4 0.0 -4,-6 1.0 19 15.666 PRINCIPAL:4 ENSMUSG00000057406 Nsd2 ENSMUST00000200981 - NO_TRANSLATION retained_intron ENSMUSG00000057406 Nsd2 ENSMUST00000058096 ENSMUSP00000058940 TRANSLATION protein_coding - CCDS51468.1 5 1365.0 52.0 12.8 4.0 300.4 0.0 -4,-6 0.9979 19 15.666 ALTERNATIVE:2 ENSMUSG00000057406 Nsd2 ENSMUST00000202912 - NO_TRANSLATION retained_intron ENSMUSG00000049550 Clip1 ENSMUST00000063905 ENSMUSP00000068241 TRANSLATION protein_coding - CCDS84958.1 5 1320.0 8.0 5.55 5.0 227.1 0.0 -4,-7 0.7721 47 15.464 MINOR ENSMUSG00000049550 Clip1 ENSMUST00000154432 - NO_TRANSLATION retained_intron ENSMUSG00000049550 Clip1 ENSMUST00000154672 ENSMUSP00000122064 TRANSLATION protein_coding start/stop - 5 1182.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0144 18 -2.0 MINOR ENSMUSG00000049550 Clip1 ENSMUST00000133545 - NO_TRANSLATION retained_intron ENSMUSG00000049550 Clip1 ENSMUST00000198833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049550 Clip1 ENSMUST00000144121 ENSMUSP00000119641 TRANSLATION nonsense_mediated_decay start - 5 172.0 0.0 1.33 0.0 79.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000049550 Clip1 ENSMUST00000199018 - NO_TRANSLATION retained_intron ENSMUSG00000049550 Clip1 ENSMUST00000125340 - NO_TRANSLATION retained_intron ENSMUSG00000049550 Clip1 ENSMUST00000137602 - NO_TRANSLATION retained_intron ENSMUSG00000049550 Clip1 ENSMUST00000111561 ENSMUSP00000107186 TRANSLATION protein_coding - - 5 1426.0 8.0 5.55 9.2 227.1 0.0 -4,-7 0.8058 51 17.0 ALTERNATIVE:1 ENSMUSG00000049550 Clip1 ENSMUST00000031382 ENSMUSP00000031382 TRANSLATION protein_coding - - 5 1437.0 8.0 5.55 9.1 227.1 0.0 -4,-7 0.7887 51 16.964 ALTERNATIVE:1 ENSMUSG00000049550 Clip1 ENSMUST00000111566 ENSMUSP00000107192 TRANSLATION protein_coding - CCDS19667.1 1 1391.0 8.0 5.55 9.2 227.1 0.0 -4,-7 1.0 52 17.0 PRINCIPAL:3 ENSMUSG00000049550 Clip1 ENSMUST00000137363 ENSMUSP00000121425 TRANSLATION protein_coding start - 5 1066.0 8.0 2.3 0.0 94.5 0.0 -4,-5 0.0113 40 -2.0 MINOR ENSMUSG00000049550 Clip1 ENSMUST00000111564 ENSMUSP00000107190 TRANSLATION protein_coding - CCDS71663.1 1 1315.0 8.0 5.55 0.8 227.1 0.0 -4,-7 0.5168 49 14.0 MINOR ENSMUSG00000049550 Clip1 ENSMUST00000149410 ENSMUSP00000115965 TRANSLATION protein_coding stop - 1 840.0 0.0 4.75 0.0 165.0 0.0 -4,-7 0.0071 29 -2.0 MINOR ENSMUSG00000029121 Crmp1 ENSMUST00000202652 ENSMUSP00000143895 TRANSLATION protein_coding stop - 3 157.0 0.0 4.25 0.0 41.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000029121 Crmp1 ENSMUST00000202377 - NO_TRANSLATION retained_intron ENSMUSG00000029121 Crmp1 ENSMUST00000201453 - NO_TRANSLATION retained_intron ENSMUSG00000029121 Crmp1 ENSMUST00000114158 ENSMUSP00000109795 TRANSLATION protein_coding - CCDS51481.1 1 686.0 0.0 12.13 23.2 114.2 0.0 -4,-6 0.8478 22 13.87 MINOR ENSMUSG00000029121 Crmp1 ENSMUST00000031004 ENSMUSP00000031004 TRANSLATION protein_coding - CCDS39075.1 1 572.0 0.0 12.63 31.9 114.2 0.0 -4,-6 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000029121 Crmp1 ENSMUST00000200834 - NO_TRANSLATION retained_intron ENSMUSG00000029121 Crmp1 ENSMUST00000201765 - NO_TRANSLATION retained_intron ENSMUSG00000029121 Crmp1 ENSMUST00000202434 ENSMUSP00000143847 TRANSLATION protein_coding stop - 1 191.0 0.0 2.25 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000029121 Crmp1 ENSMUST00000201834 ENSMUSP00000144408 TRANSLATION protein_coding stop - 3 143.0 0.0 3.75 0.0 39.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029121 Crmp1 ENSMUST00000201315 - NO_TRANSLATION retained_intron ENSMUSG00000029470 P2rx4 ENSMUST00000142664 ENSMUSP00000117193 TRANSLATION protein_coding - CCDS80392.1 1 366.0 0.0 9.295 1.1 487.9 4.0 -4,-7 0.06 9 5.328 MINOR ENSMUSG00000029470 P2rx4 ENSMUST00000132062 - NO_TRANSLATION retained_intron ENSMUSG00000029470 P2rx4 ENSMUST00000198560 ENSMUSP00000142849 TRANSLATION nonsense_mediated_decay - - 5 52.0 0.0 0.8 0.0 36.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029470 P2rx4 ENSMUST00000081554 ENSMUSP00000080269 TRANSLATION protein_coding - CCDS80393.1 1 361.0 0.0 9.295 0.0 509.2 3.0 -4,-7 0.0325 7 6.57 MINOR ENSMUSG00000029470 P2rx4 ENSMUST00000195963 - NO_TRANSLATION retained_intron ENSMUSG00000029470 P2rx4 ENSMUST00000139631 ENSMUSP00000118163 TRANSLATION protein_coding - - 5 339.0 0.0 8.545 0.0 422.3 4.0 -4,-7 0.0054 7 3.0 MINOR ENSMUSG00000029470 P2rx4 ENSMUST00000152337 - NO_TRANSLATION retained_intron ENSMUSG00000029470 P2rx4 ENSMUST00000031429 ENSMUSP00000031429 TRANSLATION protein_coding - CCDS19654.2 1 388.0 0.0 10.045 9.1 574.7 3.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000029470 P2rx4 ENSMUST00000139712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019179 Mdh2 ENSMUST00000200556 ENSMUSP00000142993 TRANSLATION protein_coding stop - 3 199.0 40.0 4.965 0.0 191.9 0.0 -4,0 0.0006 9 -2.0 MINOR ENSMUSG00000019179 Mdh2 ENSMUST00000130795 - NO_TRANSLATION retained_intron ENSMUSG00000019179 Mdh2 ENSMUST00000143747 - NO_TRANSLATION retained_intron ENSMUSG00000019179 Mdh2 ENSMUST00000197909 - NO_TRANSLATION retained_intron ENSMUSG00000019179 Mdh2 ENSMUST00000019323 ENSMUSP00000019323 TRANSLATION protein_coding - CCDS19746.1 1 338.0 58.0 8.55 34.9 356.1 0.0 -4,0 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000019179 Mdh2 ENSMUST00000196285 ENSMUSP00000143748 TRANSLATION protein_coding stop - 3 153.0 36.0 4.05 0.0 65.0 0.0 -4,0 0.0006 4 -2.0 MINOR ENSMUSG00000019179 Mdh2 ENSMUST00000138101 ENSMUSP00000136225 TRANSLATION nonsense_mediated_decay - - 5 51.0 4.0 0.3 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000029309 Sparcl1 ENSMUST00000031249 ENSMUSP00000031249 TRANSLATION protein_coding - CCDS19483.1 1 650.0 9.0 5.33 0.0 233.4 0.0 4,-1 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000029309 Sparcl1 ENSMUST00000199947 ENSMUSP00000143177 TRANSLATION protein_coding stop - 3 239.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0036 2 -2.0 MINOR ENSMUSG00000059991 Nptx2 ENSMUST00000071782 ENSMUSP00000071687 TRANSLATION protein_coding - CCDS19849.1 1 429.0 0.0 3.0 3.5 114.7 0.0 2,-1 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000039533 Mmd2 ENSMUST00000037048 ENSMUSP00000039357 TRANSLATION protein_coding - CCDS39363.1 1 247.0 0.0 5.25 5.1 66.4 0.0 -4,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000039533 Mmd2 ENSMUST00000196972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039533 Mmd2 ENSMUST00000195947 - NO_TRANSLATION retained_intron ENSMUSG00000072845 Tmprss11a ENSMUST00000101073 ENSMUSP00000098634 TRANSLATION protein_coding - CCDS51531.1 1 389.0 3.0 3.8 0.1 303.9 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000072845 Tmprss11a ENSMUST00000198504 - NO_TRANSLATION retained_intron ENSMUSG00000029283 Cdc7 ENSMUST00000118261 ENSMUSP00000113385 TRANSLATION protein_coding - CCDS19498.1 1 564.0 21.0 6.08 0.1 154.5 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:2 ENSMUSG00000029283 Cdc7 ENSMUST00000140378 - NO_TRANSLATION retained_intron ENSMUSG00000029283 Cdc7 ENSMUST00000129938 ENSMUSP00000119612 TRANSLATION nonsense_mediated_decay - - 2 309.0 21.0 4.75 0.0 93.3 0.0 -4,-5 0.0018 1 -2.0 MINOR ENSMUSG00000029283 Cdc7 ENSMUST00000076467 ENSMUSP00000075792 TRANSLATION protein_coding - CCDS71629.1 1 525.0 21.0 5.65 0.1 125.8 0.0 -4,-5 0.0217 3 11.142 MINOR ENSMUSG00000029283 Cdc7 ENSMUST00000031221 ENSMUSP00000031221 TRANSLATION protein_coding - CCDS19498.1 1 564.0 21.0 6.08 0.1 154.5 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:2 ENSMUSG00000029283 Cdc7 ENSMUST00000117196 ENSMUSP00000112392 TRANSLATION protein_coding - CCDS71628.1 1 532.0 21.0 5.98 0.1 154.5 0.0 -4,-5 0.1367 3 11.802 ALTERNATIVE:2 ENSMUSG00000029283 Cdc7 ENSMUST00000123546 - NO_TRANSLATION retained_intron ENSMUSG00000029283 Cdc7 ENSMUST00000199223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096344 Gm6408 ENSMUST00000179032 ENSMUSP00000136735 TRANSLATION protein_coding - CCDS85001.1 5 320.0 0.0 2.5 0.0 29.4 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059447 Hadhb ENSMUST00000133414 - NO_TRANSLATION retained_intron ENSMUSG00000059447 Hadhb ENSMUST00000123980 ENSMUSP00000118296 TRANSLATION protein_coding stop - 3 173.0 1.0 2.93 0.0 106.9 0.0 -4,0 0.0 7 -2.0 MINOR ENSMUSG00000059447 Hadhb ENSMUST00000141236 - NO_TRANSLATION retained_intron ENSMUSG00000059447 Hadhb ENSMUST00000114783 ENSMUSP00000110431 TRANSLATION protein_coding - CCDS39045.1 1 475.0 15.0 10.74 35.0 464.7 0.0 -4,0 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000059447 Hadhb ENSMUST00000127364 - NO_TRANSLATION retained_intron ENSMUSG00000059447 Hadhb ENSMUST00000114786 ENSMUSP00000110434 TRANSLATION protein_coding - CCDS39045.1 1 475.0 15.0 10.74 35.0 464.7 0.0 -4,0 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000059447 Hadhb ENSMUST00000026841 ENSMUSP00000026841 TRANSLATION protein_coding - CCDS39045.1 1 475.0 15.0 10.74 35.0 464.7 0.0 -4,0 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000059447 Hadhb ENSMUST00000122934 - NO_TRANSLATION retained_intron ENSMUSG00000059447 Hadhb ENSMUST00000197109 ENSMUSP00000142868 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000060512 0610040J01Rik ENSMUST00000196367 ENSMUSP00000142658 TRANSLATION protein_coding stop - 2 114.0 0.0 0.0 0.0 135.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000060512 0610040J01Rik ENSMUST00000081747 ENSMUSP00000080443 TRANSLATION protein_coding - CCDS39092.1 1 313.0 0.0 0.0 0.4 399.4 0.0 -4,-6 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000060512 0610040J01Rik ENSMUST00000199667 ENSMUSP00000142539 TRANSLATION protein_coding stop - 3 202.0 0.0 0.0 0.0 222.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000060512 0610040J01Rik ENSMUST00000196575 ENSMUSP00000142473 TRANSLATION protein_coding stop - 3 215.0 0.0 0.0 0.0 244.5 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000038970 Lmtk2 ENSMUST00000041804 ENSMUSP00000048238 TRANSLATION protein_coding - CCDS39376.1 1 1471.0 3.0 6.05 0.0 179.8 0.0 4,-1 1.0 23 15.0 PRINCIPAL:1 ENSMUSG00000036377 Cracd ENSMUST00000120639 ENSMUSP00000113796 TRANSLATION protein_coding - CCDS51526.1 1 1288.0 0.0 0.0 0.0 130.8 0.0 -4,-5 1.0 18 2.0 PRINCIPAL:2 ENSMUSG00000036377 Cracd ENSMUST00000151567 ENSMUSP00000116870 TRANSLATION protein_coding start - 3 95.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000036377 Cracd ENSMUST00000121851 ENSMUSP00000112941 TRANSLATION protein_coding - - 1 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000036377 Cracd ENSMUST00000121160 ENSMUSP00000113947 TRANSLATION protein_coding - - 5 1291.0 0.0 0.0 0.0 130.8 0.0 -4,-5 0.4737 18 2.0 ALTERNATIVE:2 ENSMUSG00000036377 Cracd ENSMUST00000149216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036377 Cracd ENSMUST00000086909 ENSMUSP00000084125 TRANSLATION protein_coding start - - 165.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000036377 Cracd ENSMUST00000238963 ENSMUSP00000159046 TRANSLATION protein_coding - - - 1376.0 0.0 0.0 0.0 130.8 0.0 -4,-5 0.2699 18 2.0 ALTERNATIVE:2 ENSMUSG00000036377 Cracd ENSMUST00000125922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036377 Cracd ENSMUST00000120818 ENSMUSP00000113485 TRANSLATION protein_coding - - 1 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000036377 Cracd ENSMUST00000152373 - NO_TRANSLATION retained_intron ENSMUSG00000036377 Cracd ENSMUST00000187287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036377 Cracd ENSMUST00000128112 ENSMUSP00000119799 TRANSLATION protein_coding stop - 2 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000038199 Iqca1l ENSMUST00000198887 ENSMUSP00000142918 TRANSLATION protein_coding stop - 3 154.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038199 Iqca1l ENSMUST00000088302 ENSMUSP00000085642 TRANSLATION protein_coding - CCDS51435.1 5 825.0 12.0 1.59 1.7 71.5 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000038199 Iqca1l ENSMUST00000198709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038199 Iqca1l ENSMUST00000200634 ENSMUSP00000142624 TRANSLATION nonsense_mediated_decay - - 1 239.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 1 -2.0 MINOR ENSMUSG00000038199 Iqca1l ENSMUST00000199185 - NO_TRANSLATION retained_intron ENSMUSG00000037007 Zfp113 ENSMUST00000049393 ENSMUSP00000041796 TRANSLATION protein_coding - CCDS19791.1 1 439.0 32.0 1.0 1.9 279.0 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000037007 Zfp113 ENSMUST00000132318 ENSMUSP00000116846 TRANSLATION protein_coding - - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000037007 Zfp113 ENSMUST00000165640 ENSMUSP00000127561 TRANSLATION protein_coding - CCDS19791.1 1 439.0 32.0 1.0 1.9 279.0 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000037007 Zfp113 ENSMUST00000144786 - NO_TRANSLATION retained_intron ENSMUSG00000041264 Uspl1 ENSMUST00000117878 ENSMUSP00000113176 TRANSLATION protein_coding - CCDS51705.1 1 318.0 4.0 0.0 0.0 409.9 0.0 -3,-5 0.0457 - 6.002 MINOR ENSMUSG00000041264 Uspl1 ENSMUST00000126168 ENSMUSP00000120808 TRANSLATION nonsense_mediated_decay - - 1 118.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000041264 Uspl1 ENSMUST00000050472 ENSMUSP00000050172 TRANSLATION protein_coding - CCDS51704.1 1 1089.0 6.0 0.0 0.0 1083.4 0.0 -4,-5 0.6082 - 8.0 PRINCIPAL:5 ENSMUSG00000041264 Uspl1 ENSMUST00000201232 - NO_TRANSLATION retained_intron ENSMUSG00000041264 Uspl1 ENSMUST00000119685 ENSMUSP00000114104 TRANSLATION protein_coding - CCDS71718.1 1 1075.0 6.0 0.0 0.0 1083.4 0.0 -4,-5 0.6082 - 8.0 ALTERNATIVE:2 ENSMUSG00000041264 Uspl1 ENSMUST00000139474 ENSMUSP00000117221 TRANSLATION protein_coding stop - 3 40.0 0.0 0.0 0.0 33.9 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000041264 Uspl1 ENSMUST00000149896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041264 Uspl1 ENSMUST00000122160 ENSMUSP00000113247 TRANSLATION protein_coding - CCDS51704.1 1 1089.0 6.0 0.0 0.0 1083.4 0.0 -4,-5 0.6082 - 8.0 PRINCIPAL:5 ENSMUSG00000041264 Uspl1 ENSMUST00000100410 ENSMUSP00000097978 TRANSLATION protein_coding - CCDS39406.1 1 517.0 6.0 0.0 0.4 409.9 0.0 -4,-5 0.5215 - 8.0 MINOR ENSMUSG00000041264 Uspl1 ENSMUST00000150921 - NO_TRANSLATION retained_intron ENSMUSG00000041264 Uspl1 ENSMUST00000121416 ENSMUSP00000113894 TRANSLATION protein_coding - CCDS51706.1 1 890.0 4.0 0.0 0.0 1083.4 0.0 -3,-5 0.421 - 6.002 MINOR ENSMUSG00000041264 Uspl1 ENSMUST00000200759 - NO_TRANSLATION retained_intron ENSMUSG00000036948 Trappc14 ENSMUST00000159534 - NO_TRANSLATION retained_intron ENSMUSG00000036948 Trappc14 ENSMUST00000159649 ENSMUSP00000125208 TRANSLATION protein_coding - - 1 311.0 0.0 0.0 3.1 564.5 0.0 -4,-5 0.0691 7 0.876 MINOR ENSMUSG00000036948 Trappc14 ENSMUST00000159146 ENSMUSP00000123724 TRANSLATION protein_coding start - 3 59.0 0.0 0.0 0.0 41.5 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000036948 Trappc14 ENSMUST00000162632 - NO_TRANSLATION retained_intron ENSMUSG00000036948 Trappc14 ENSMUST00000048421 ENSMUSP00000046898 TRANSLATION protein_coding - CCDS39343.2 1 580.0 0.0 0.0 8.2 824.1 0.0 -4,-5 1.0 9 9.0 PRINCIPAL:1 ENSMUSG00000036948 Trappc14 ENSMUST00000159872 - NO_TRANSLATION retained_intron ENSMUSG00000036948 Trappc14 ENSMUST00000159123 ENSMUSP00000137679 TRANSLATION nonsense_mediated_decay - - 5 169.0 0.0 0.0 0.0 35.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029726 Mepce ENSMUST00000031740 ENSMUSP00000031740 TRANSLATION protein_coding - CCDS39337.1 1 666.0 19.0 3.6 0.1 179.2 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000029726 Mepce ENSMUST00000196022 ENSMUSP00000143201 TRANSLATION protein_coding stop - 5 32.0 0.0 1.0 0.0 40.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029726 Mepce ENSMUST00000132726 ENSMUSP00000118688 TRANSLATION protein_coding start - 3 173.0 7.0 3.5 0.0 147.2 0.0 -4,-7 0.0291 - -2.0 MINOR ENSMUSG00000029726 Mepce ENSMUST00000140336 - NO_TRANSLATION retained_intron ENSMUSG00000029726 Mepce ENSMUST00000196936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037224 Zfyve28 ENSMUST00000130435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037224 Zfyve28 ENSMUST00000114370 - NO_TRANSLATION retained_intron ENSMUSG00000037224 Zfyve28 ENSMUST00000132104 - NO_TRANSLATION retained_intron ENSMUSG00000037224 Zfyve28 ENSMUST00000094868 ENSMUSP00000092464 TRANSLATION protein_coding - CCDS39068.1 1 905.0 8.0 2.0 1.1 68.4 0.0 -4,-7 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000037224 Zfyve28 ENSMUST00000114369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037224 Zfyve28 ENSMUST00000114368 ENSMUSP00000110008 TRANSLATION protein_coding stop - 3 137.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000091933 Gm8857 ENSMUST00000249592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091933 Gm8857 ENSMUST00000249593 ENSMUSP00000159802 TRANSLATION protein_coding - - - 149.0 0.0 0.84 0.0 42.1 0.0 -4,-2 0.7769 - 12.0 PRINCIPAL:1 ENSMUSG00000094105 Gm8922 ENSMUST00000178989 ENSMUSP00000137032 TRANSLATION protein_coding start - 5 154.0 0.0 1.306 0.0 81.7 0.0 -4,-5 0.0628 - -2.0 MINOR ENSMUSG00000094105 Gm8922 ENSMUST00000170057 ENSMUSP00000132013 TRANSLATION protein_coding - - 5 199.0 0.0 1.306 0.0 81.7 0.0 -4,-2 0.7804 - 12.0 PRINCIPAL:1 ENSMUSG00000029623 Pdap1 ENSMUST00000148781 - NO_TRANSLATION retained_intron ENSMUSG00000029623 Pdap1 ENSMUST00000123111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029623 Pdap1 ENSMUST00000199218 - NO_TRANSLATION retained_intron ENSMUSG00000029623 Pdap1 ENSMUST00000031627 ENSMUSP00000031627 TRANSLATION protein_coding - CCDS39384.1 1 181.0 0.0 1.1 22.9 104.7 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000029623 Pdap1 ENSMUST00000143439 - NO_TRANSLATION retained_intron ENSMUSG00000090688 Vmn2r12 ENSMUST00000095922 ENSMUSP00000093612 TRANSLATION protein_coding - CCDS51598.1 5 831.0 4.0 2.36 0.3 365.3 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029130 Rnf32 ENSMUST00000159272 ENSMUSP00000124537 TRANSLATION protein_coding stop - 2 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029130 Rnf32 ENSMUST00000198669 ENSMUSP00000144394 TRANSLATION protein_coding stop - 5 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029130 Rnf32 ENSMUST00000160383 ENSMUSP00000125515 TRANSLATION nonsense_mediated_decay - - 1 103.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029130 Rnf32 ENSMUST00000161398 ENSMUSP00000125741 TRANSLATION protein_coding stop - 3 123.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029130 Rnf32 ENSMUST00000168460 ENSMUSP00000132213 TRANSLATION protein_coding - CCDS39041.1 1 368.0 14.0 1.1 7.7 84.7 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000029130 Rnf32 ENSMUST00000160887 - NO_TRANSLATION retained_intron ENSMUSG00000029130 Rnf32 ENSMUST00000160246 ENSMUSP00000124657 TRANSLATION protein_coding - CCDS39041.1 1 368.0 14.0 1.1 7.7 84.7 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000029130 Rnf32 ENSMUST00000001247 ENSMUSP00000001247 TRANSLATION protein_coding - CCDS39041.1 1 368.0 14.0 1.1 7.7 84.7 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000029130 Rnf32 ENSMUST00000163050 - NO_TRANSLATION retained_intron ENSMUSG00000029130 Rnf32 ENSMUST00000162975 ENSMUSP00000123952 TRANSLATION protein_coding start - 3 275.0 14.0 1.1 0.0 84.7 0.0 -4,-5 0.0391 - -2.0 MINOR ENSMUSG00000029130 Rnf32 ENSMUST00000160888 ENSMUSP00000124499 TRANSLATION protein_coding stop - 3 120.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029130 Rnf32 ENSMUST00000160051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101678 Gm29609 ENSMUST00000101411 ENSMUSP00000098957 TRANSLATION protein_coding,RT - - 2 907.0 0.0 0.0 0.0 15.3 0.0 -4,-5 0.7722 - -2.0 PRINCIPAL:1 ENSMUSG00000101678 Gm29609 ENSMUST00000136581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001168 Oas1h ENSMUST00000072476 ENSMUSP00000072297 TRANSLATION protein_coding - CCDS19629.1 1 369.0 9.0 4.1 0.0 280.6 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000001168 Oas1h ENSMUST00000171820 ENSMUSP00000132033 TRANSLATION protein_coding - CCDS51636.1 5 239.0 6.0 2.1 0.0 95.6 0.0 -4,-7 0.005 - 6.0 MINOR ENSMUSG00000091624 Vmn2r9 ENSMUST00000233835 ENSMUSP00000156817 TRANSLATION protein_coding - - - 827.0 4.0 2.111 0.0 342.5 9.0 1,-3 0.0698 - 14.338 MINOR ENSMUSG00000091624 Vmn2r9 ENSMUST00000233547 ENSMUSP00000156745 TRANSLATION nonsense_mediated_decay - - - 827.0 4.0 2.111 0.0 342.5 9.0 1,-3 0.0698 - -2.0 MINOR ENSMUSG00000091624 Vmn2r9 ENSMUST00000233198 ENSMUSP00000156678 TRANSLATION nonsense_mediated_decay - CCDS51595.1 - 848.0 4.0 2.411 0.1 357.8 9.0 1,-3 1.0 - -2.0 MINOR ENSMUSG00000091624 Vmn2r9 ENSMUST00000170419 ENSMUSP00000129520 TRANSLATION protein_coding - CCDS51595.1 5 848.0 4.0 2.411 0.1 357.8 9.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000056367 Actr3b ENSMUST00000088244 ENSMUSP00000085578 TRANSLATION protein_coding - CCDS19136.1 1 418.0 22.0 11.0 31.2 292.7 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000056367 Actr3b ENSMUST00000128727 ENSMUSP00000121629 TRANSLATION protein_coding - CCDS80232.1 1 330.0 16.0 8.5 15.5 120.5 0.0 -4,-5 0.3583 10 4.92 MINOR ENSMUSG00000056367 Actr3b ENSMUST00000198693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053129 Gsx1 ENSMUST00000065382 ENSMUSP00000069728 TRANSLATION protein_coding - CCDS19877.1 1 261.0 0.0 0.8 5.3 77.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035273 Hpse ENSMUST00000045617 ENSMUSP00000044072 TRANSLATION protein_coding - CCDS19466.1 1 535.0 9.0 11.5 0.0 0.0 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000035273 Hpse ENSMUST00000112908 ENSMUSP00000108529 TRANSLATION protein_coding - - 1 483.0 9.0 10.5 0.0 0.0 0.0 3,-2 0.1336 4 10.002 MINOR ENSMUSG00000106631 Gm42669 ENSMUST00000143074 ENSMUSP00000122032 TRANSLATION protein_coding,RT start - 1 571.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.3873 - -2.0 PRINCIPAL:5 ENSMUSG00000106631 Gm42669 ENSMUST00000160160 ENSMUSP00000124398 TRANSLATION protein_coding,RT - - 2 138.0 0.0 3.2 0.0 219.0 0.0 -4,-5 0.0493 - -2.0 ALTERNATIVE:2 ENSMUSG00000032623 Oas1d ENSMUST00000044224 ENSMUSP00000048054 TRANSLATION protein_coding - CCDS19631.1 1 361.0 8.0 4.3 0.1 245.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000047881 Rell1 ENSMUST00000087327 ENSMUSP00000084585 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0 - -2.0 MINOR ENSMUSG00000047881 Rell1 ENSMUST00000154532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047881 Rell1 ENSMUST00000128967 - NO_TRANSLATION retained_intron ENSMUSG00000047881 Rell1 ENSMUST00000154169 ENSMUSP00000118125 TRANSLATION protein_coding - CCDS39093.1 1 272.0 0.0 0.8 9.2 81.2 0.0 2,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000047881 Rell1 ENSMUST00000127314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029456 Acad10 ENSMUST00000143187 - NO_TRANSLATION retained_intron ENSMUSG00000029456 Acad10 ENSMUST00000111770 ENSMUSP00000107400 TRANSLATION protein_coding - CCDS51643.1 1 1069.0 38.0 14.33 0.4 431.7 0.0 -4,0 1.0 22 18.0 PRINCIPAL:1 ENSMUSG00000029456 Acad10 ENSMUST00000031412 ENSMUSP00000031412 TRANSLATION protein_coding - CCDS51643.1 1 1069.0 38.0 14.33 0.4 431.7 0.0 -4,0 1.0 22 18.0 PRINCIPAL:1 ENSMUSG00000029456 Acad10 ENSMUST00000137789 - NO_TRANSLATION retained_intron ENSMUSG00000029456 Acad10 ENSMUST00000137231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029456 Acad10 ENSMUST00000133775 - NO_TRANSLATION retained_intron ENSMUSG00000029404 Arl6ip4 ENSMUST00000196401 ENSMUSP00000142496 TRANSLATION protein_coding start - 5 60.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029404 Arl6ip4 ENSMUST00000122394 ENSMUSP00000112506 TRANSLATION protein_coding - - 5 200.0 0.0 1.8 0.0 291.5 0.0 -4,-7 0.0145 3 9.006 MINOR ENSMUSG00000029404 Arl6ip4 ENSMUST00000145667 ENSMUSP00000122377 TRANSLATION protein_coding stop - 2 226.0 0.0 1.9 0.0 303.4 0.0 -4,-7 0.0773 3 -2.0 MINOR ENSMUSG00000029404 Arl6ip4 ENSMUST00000031351 ENSMUSP00000031351 TRANSLATION protein_coding - CCDS19673.1 1 229.0 0.0 1.8 0.0 336.1 0.0 -4,-7 1.0 3 11.682 PRINCIPAL:1 ENSMUSG00000029404 Arl6ip4 ENSMUST00000149835 ENSMUSP00000116269 TRANSLATION protein_coding stop - 3 98.0 0.0 0.0 0.0 52.4 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000059434 Gckr ENSMUST00000201675 ENSMUSP00000144568 TRANSLATION protein_coding stop - 5 121.0 0.0 3.25 0.0 0.0 0.0 -4,-5 0.0006 2 -2.0 MINOR ENSMUSG00000059434 Gckr ENSMUST00000202312 - NO_TRANSLATION retained_intron ENSMUSG00000059434 Gckr ENSMUST00000202242 - NO_TRANSLATION retained_intron ENSMUSG00000059434 Gckr ENSMUST00000202456 - NO_TRANSLATION retained_intron ENSMUSG00000059434 Gckr ENSMUST00000201166 ENSMUSP00000144202 TRANSLATION protein_coding - - 5 623.0 0.0 17.25 2.0 0.0 0.0 -4,-5 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000059434 Gckr ENSMUST00000072228 ENSMUSP00000072084 TRANSLATION protein_coding - CCDS19182.1 1 587.0 0.0 16.25 0.0 0.0 0.0 -4,-5 0.1226 11 4.002 MINOR ENSMUSG00000059434 Gckr ENSMUST00000202909 - NO_TRANSLATION retained_intron ENSMUSG00000121598 ENSMUSG00000121598 ENSMUST00000249618 ENSMUSP00000159827 TRANSLATION protein_coding - - - 56.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.5818 - 0.0 PRINCIPAL:1 ENSMUSG00000029455 Aldh2 ENSMUST00000200541 ENSMUSP00000143034 TRANSLATION protein_coding start - 3 196.0 5.0 4.33 0.0 223.0 0.0 -4,-7 0.0 11 -2.0 MINOR ENSMUSG00000029455 Aldh2 ENSMUST00000152945 ENSMUSP00000123545 TRANSLATION protein_coding stop - 3 185.0 0.0 4.7 0.0 123.1 0.0 -3,1 0.0 5 -2.0 MINOR ENSMUSG00000029455 Aldh2 ENSMUST00000031411 ENSMUSP00000031411 TRANSLATION protein_coding - CCDS19638.1 1 519.0 27.0 13.01 14.2 610.8 0.0 -3,1 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000029455 Aldh2 ENSMUST00000196694 - NO_TRANSLATION retained_intron ENSMUSG00000029455 Aldh2 ENSMUST00000199369 ENSMUSP00000143261 TRANSLATION protein_coding start - 5 229.0 12.0 5.83 0.0 145.9 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000029455 Aldh2 ENSMUST00000133033 - NO_TRANSLATION retained_intron ENSMUSG00000029455 Aldh2 ENSMUST00000129753 ENSMUSP00000142906 TRANSLATION protein_coding - CCDS84951.1 1 471.0 26.0 11.68 0.0 553.6 0.0 -3,1 0.0198 25 11.244 MINOR ENSMUSG00000056966 Gjc3 ENSMUST00000077119 ENSMUSP00000076367 TRANSLATION protein_coding - CCDS19782.1 1 269.0 0.0 0.5 0.0 204.0 0.0 -4,0 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000056966 Gjc3 ENSMUST00000199083 - NO_TRANSLATION retained_intron ENSMUSG00000033316 Galnt9 ENSMUST00000200404 ENSMUSP00000143647 TRANSLATION nonsense_mediated_decay - - 1 137.0 3.0 3.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033316 Galnt9 ENSMUST00000040001 ENSMUSP00000038633 TRANSLATION protein_coding - CCDS51610.1 1 604.0 14.0 9.93 29.7 158.3 0.0 -2,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000033316 Galnt9 ENSMUST00000165856 ENSMUSP00000133111 TRANSLATION protein_coding - CCDS51611.1 1 237.0 3.0 4.6 8.5 73.4 0.0 -4,-5 0.1531 1 1.95 MINOR ENSMUSG00000039178 Tbc1d19 ENSMUST00000201387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039178 Tbc1d19 ENSMUST00000202528 ENSMUSP00000143985 TRANSLATION nonsense_mediated_decay - - 5 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039178 Tbc1d19 ENSMUST00000201727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039178 Tbc1d19 ENSMUST00000202880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039178 Tbc1d19 ENSMUST00000202599 ENSMUSP00000144033 TRANSLATION nonsense_mediated_decay - - 3 103.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039178 Tbc1d19 ENSMUST00000202695 - NO_TRANSLATION retained_intron ENSMUSG00000039178 Tbc1d19 ENSMUST00000037337 ENSMUSP00000040585 TRANSLATION protein_coding - CCDS19294.1 1 526.0 0.0 0.0 27.0 48.7 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000039178 Tbc1d19 ENSMUST00000201116 - NO_TRANSLATION retained_intron ENSMUSG00000039178 Tbc1d19 ENSMUST00000201958 ENSMUSP00000144558 TRANSLATION nonsense_mediated_decay - - 1 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037221 Mospd3 ENSMUST00000133705 ENSMUSP00000122462 TRANSLATION protein_coding stop - 3 74.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000037221 Mospd3 ENSMUST00000126904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037221 Mospd3 ENSMUST00000196366 - NO_TRANSLATION retained_intron ENSMUSG00000037221 Mospd3 ENSMUST00000111007 ENSMUSP00000106636 TRANSLATION protein_coding - CCDS19771.1 1 235.0 0.0 2.83 9.9 56.3 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000037221 Mospd3 ENSMUST00000154708 ENSMUSP00000116851 TRANSLATION protein_coding stop - 5 175.0 0.0 2.83 0.1 56.3 0.0 -4,-7 0.0687 4 -2.0 MINOR ENSMUSG00000037221 Mospd3 ENSMUST00000037620 ENSMUSP00000040828 TRANSLATION protein_coding - CCDS19771.1 1 235.0 0.0 2.83 9.9 56.3 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000029415 Sdad1 ENSMUST00000201143 ENSMUSP00000144446 TRANSLATION protein_coding - - 5 686.0 0.0 0.0 21.7 210.2 0.0 -4,-6 0.8735 8 6.0 ALTERNATIVE:1 ENSMUSG00000029415 Sdad1 ENSMUST00000201532 - NO_TRANSLATION retained_intron ENSMUSG00000029415 Sdad1 ENSMUST00000031364 ENSMUSP00000031364 TRANSLATION protein_coding - CCDS19429.1 1 687.0 0.0 0.0 21.7 210.2 0.0 -4,-6 1.0 8 6.0 PRINCIPAL:4 ENSMUSG00000029415 Sdad1 ENSMUST00000201084 - NO_TRANSLATION retained_intron ENSMUSG00000029415 Sdad1 ENSMUST00000202604 - NO_TRANSLATION retained_intron ENSMUSG00000029415 Sdad1 ENSMUST00000202903 - NO_TRANSLATION retained_intron ENSMUSG00000029415 Sdad1 ENSMUST00000202870 ENSMUSP00000144014 TRANSLATION protein_coding stop - 3 64.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025856 Pdgfa ENSMUST00000110897 ENSMUSP00000106522 TRANSLATION protein_coding - CCDS19802.1 5 196.0 0.0 3.0 21.3 179.6 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000025856 Pdgfa ENSMUST00000110896 ENSMUSP00000106521 TRANSLATION protein_coding - CCDS19802.1 5 196.0 0.0 3.0 21.3 179.6 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000025856 Pdgfa ENSMUST00000132051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025856 Pdgfa ENSMUST00000046901 ENSMUSP00000038870 TRANSLATION protein_coding - - 1 211.0 0.0 3.0 8.1 179.6 0.0 4,-1 0.3763 1 13.4 MINOR ENSMUSG00000025856 Pdgfa ENSMUST00000144934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025856 Pdgfa ENSMUST00000124080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025856 Pdgfa ENSMUST00000076095 ENSMUSP00000075463 TRANSLATION protein_coding - CCDS19802.1 1 196.0 0.0 3.0 21.3 179.6 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000049537 Tecrl ENSMUST00000146669 ENSMUSP00000115144 TRANSLATION protein_coding start/stop - 3 214.0 0.0 4.678 0.0 0.0 3.0 -4,-1 0.0017 - -2.0 MINOR ENSMUSG00000049537 Tecrl ENSMUST00000053543 ENSMUSP00000062122 TRANSLATION protein_coding - CCDS19375.1 1 361.0 0.0 7.78 20.5 69.4 4.0 -4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035266 Helq ENSMUST00000044684 ENSMUSP00000041599 TRANSLATION protein_coding - CCDS39184.1 1 1069.0 12.0 16.85 0.1 96.6 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000035266 Helq ENSMUST00000151201 ENSMUSP00000118493 TRANSLATION nonsense_mediated_decay - - 1 311.0 2.0 0.0 0.0 0.0 0.0 -4,-7 0.0045 - -2.0 MINOR ENSMUSG00000035266 Helq ENSMUST00000133845 ENSMUSP00000116470 TRANSLATION protein_coding start - 1 972.0 12.0 14.85 0.0 96.6 0.0 -4,-2 0.1025 2 -2.0 MINOR ENSMUSG00000035266 Helq ENSMUST00000138417 - NO_TRANSLATION retained_intron ENSMUSG00000035266 Helq ENSMUST00000152554 - NO_TRANSLATION retained_intron ENSMUSG00000035266 Helq ENSMUST00000155362 ENSMUSP00000120806 TRANSLATION nonsense_mediated_decay start - 3 166.0 0.0 2.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035266 Helq ENSMUST00000135102 - NO_TRANSLATION retained_intron ENSMUSG00000035266 Helq ENSMUST00000139203 - NO_TRANSLATION retained_intron ENSMUSG00000035266 Helq ENSMUST00000198409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035266 Helq ENSMUST00000144948 - NO_TRANSLATION retained_intron ENSMUSG00000016128 Stard13 ENSMUST00000110483 ENSMUSP00000106109 TRANSLATION protein_coding - CCDS19890.1 1 1113.0 0.0 8.494 0.0 283.8 0.0 -4,-6 0.4968 12 8.0 ALTERNATIVE:2 ENSMUSG00000016128 Stard13 ENSMUST00000202866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016128 Stard13 ENSMUST00000062015 ENSMUSP00000053232 TRANSLATION protein_coding - CCDS51710.1 1 1132.0 0.0 8.494 2.0 283.8 0.0 -4,-6 1.0 12 8.646 PRINCIPAL:2 ENSMUSG00000016128 Stard13 ENSMUST00000129088 ENSMUSP00000116705 TRANSLATION protein_coding stop - 3 129.0 0.0 1.5 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000016128 Stard13 ENSMUST00000201680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016128 Stard13 ENSMUST00000202385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016128 Stard13 ENSMUST00000141117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016128 Stard13 ENSMUST00000202111 ENSMUSP00000144056 TRANSLATION protein_coding - - 5 995.0 0.0 6.664 4.1 257.8 0.0 -4,-5 0.4378 12 5.54 MINOR ENSMUSG00000016128 Stard13 ENSMUST00000126770 ENSMUSP00000122468 TRANSLATION protein_coding stop - 3 111.0 0.0 1.995 0.0 26.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000016128 Stard13 ENSMUST00000146814 - NO_TRANSLATION retained_intron ENSMUSG00000105078 Vamp9 ENSMUST00000198837 ENSMUSP00000148490 TRANSLATION protein_coding - - 5 214.0 0.0 2.57 4.6 48.7 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000105078 Vamp9 ENSMUST00000212307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000105078 Vamp9 ENSMUST00000212249 ENSMUSP00000148268 TRANSLATION nonsense_mediated_decay - - 5 54.0 0.0 0.57 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000105078 Vamp9 ENSMUST00000200398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000105078 Vamp9 ENSMUST00000212164 ENSMUSP00000148462 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 0.57 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029151 Slc30a3 ENSMUST00000201783 ENSMUSP00000144353 TRANSLATION protein_coding start - 2 87.0 0.0 1.1 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000029151 Slc30a3 ENSMUST00000031037 ENSMUSP00000031037 TRANSLATION protein_coding - CCDS51455.1 1 388.0 0.0 4.13 8.7 149.7 7.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000029151 Slc30a3 ENSMUST00000200906 ENSMUSP00000144098 TRANSLATION protein_coding stop - 5 173.0 0.0 2.348 0.0 84.2 4.0 -4,-2 0.0021 2 -2.0 MINOR ENSMUSG00000029151 Slc30a3 ENSMUST00000201396 ENSMUSP00000144295 TRANSLATION protein_coding stop - 3 124.0 0.0 2.15 0.0 82.5 4.0 -4,-7 0.0021 1 -2.0 MINOR ENSMUSG00000029151 Slc30a3 ENSMUST00000202731 ENSMUSP00000144574 TRANSLATION nonsense_mediated_decay - - 3 60.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029151 Slc30a3 ENSMUST00000202740 ENSMUSP00000144566 TRANSLATION protein_coding - CCDS84861.1 5 339.0 0.0 4.13 4.4 149.7 7.0 -4,-7 0.6626 5 13.326 MINOR ENSMUSG00000029711 Epo ENSMUST00000111039 ENSMUSP00000106668 TRANSLATION protein_coding - CCDS84978.1 1 191.0 0.0 3.55 1.1 223.6 0.0 4,-1 0.7908 - 9.0 ALTERNATIVE:2 ENSMUSG00000029711 Epo ENSMUST00000111038 ENSMUSP00000106667 TRANSLATION protein_coding - CCDS39332.1 5 192.0 0.0 3.55 1.1 222.5 0.0 4,-1 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000029711 Epo ENSMUST00000031723 ENSMUSP00000031723 TRANSLATION protein_coding - CCDS39332.1 1 192.0 0.0 3.55 1.1 222.5 0.0 4,-1 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000051034 Zfp11 ENSMUST00000049778 ENSMUSP00000051861 TRANSLATION protein_coding - CCDS39291.1 1 647.0 87.0 1.0 0.1 423.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000038593 Tctn1 ENSMUST00000137118 - NO_TRANSLATION retained_intron ENSMUSG00000038593 Tctn1 ENSMUST00000176677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038593 Tctn1 ENSMUST00000177148 - NO_TRANSLATION retained_intron ENSMUSG00000038593 Tctn1 ENSMUST00000111738 ENSMUSP00000107367 TRANSLATION protein_coding - CCDS39254.1 1 593.0 0.0 0.0 0.1 273.9 0.0 0,-3 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000038593 Tctn1 ENSMUST00000141281 ENSMUSP00000114820 TRANSLATION nonsense_mediated_decay - - 1 396.0 0.0 0.0 0.0 250.5 0.0 0,-3 0.011 2 -2.0 MINOR ENSMUSG00000038342 Mlxip ENSMUST00000068237 ENSMUSP00000064943 TRANSLATION protein_coding - CCDS19662.1 1 917.0 0.0 0.8 0.8 35.7 0.0 -4,-2 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000038342 Mlxip ENSMUST00000199458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038342 Mlxip ENSMUST00000111596 ENSMUSP00000107223 TRANSLATION protein_coding - CCDS39268.1 1 614.0 0.0 0.8 0.0 0.0 0.0 -4,-2 0.1757 4 6.0 MINOR ENSMUSG00000038342 Mlxip ENSMUST00000135961 ENSMUSP00000120510 TRANSLATION nonsense_mediated_decay start - 1 241.0 0.0 0.0 0.0 35.7 0.0 -4,-5 0.0379 4 -2.0 MINOR ENSMUSG00000036256 Igfbp7 ENSMUST00000163898 ENSMUSP00000128318 TRANSLATION protein_coding - - 5 312.0 0.0 3.3 0.0 111.3 0.0 1,-3 0.181 14 8.0 ALTERNATIVE:2 ENSMUSG00000036256 Igfbp7 ENSMUST00000046746 ENSMUSP00000045057 TRANSLATION protein_coding - - 1 281.0 0.0 3.3 0.1 111.3 0.0 1,-3 0.8209 15 8.0 PRINCIPAL:2 ENSMUSG00000029544 Cabp1 ENSMUST00000145197 ENSMUSP00000138183 TRANSLATION nonsense_mediated_decay - - 2 85.0 0.0 0.3 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029544 Cabp1 ENSMUST00000112109 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029544 Cabp1 ENSMUST00000112112 ENSMUSP00000107740 TRANSLATION protein_coding - CCDS80378.1 1 167.0 20.0 3.96 21.3 95.3 0.0 -4,-7 0.8524 1 17.288 ALTERNATIVE:1 ENSMUSG00000029544 Cabp1 ENSMUST00000201900 - NO_TRANSLATION retained_intron ENSMUSG00000029544 Cabp1 ENSMUST00000151775 - NO_TRANSLATION retained_intron ENSMUSG00000029544 Cabp1 ENSMUST00000112113 ENSMUSP00000107741 TRANSLATION protein_coding - CCDS80379.1 1 350.0 20.0 3.66 0.4 95.3 0.0 -4,-6 0.0719 5 13.4 MINOR ENSMUSG00000029544 Cabp1 ENSMUST00000031519 ENSMUSP00000031519 TRANSLATION protein_coding - CCDS19582.1 1 227.0 20.0 3.96 25.7 95.3 0.0 -4,-2 1.0 1 18.0 PRINCIPAL:4 ENSMUSG00000063646 Jakmip1 ENSMUST00000121010 ENSMUSP00000113624 TRANSLATION protein_coding - - 5 831.0 0.0 0.0 16.2 272.9 0.0 -4,-5 1.0 12 10.0 PRINCIPAL:1 ENSMUSG00000063646 Jakmip1 ENSMUST00000208852 ENSMUSP00000146844 TRANSLATION protein_coding start - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000063646 Jakmip1 ENSMUST00000172940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063646 Jakmip1 ENSMUST00000043794 ENSMUSP00000038504 TRANSLATION protein_coding - CCDS19246.1 1 626.0 0.0 0.0 11.2 257.0 0.0 -4,-5 0.867 9 7.73 MINOR ENSMUSG00000063646 Jakmip1 ENSMUST00000152445 - NO_TRANSLATION retained_intron ENSMUSG00000063646 Jakmip1 ENSMUST00000137019 ENSMUSP00000122584 TRANSLATION protein_coding stop - 1 339.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 6 -2.0 MINOR ENSMUSG00000063646 Jakmip1 ENSMUST00000174629 ENSMUSP00000134288 TRANSLATION protein_coding - - 5 646.0 0.0 0.0 0.0 258.9 0.0 -4,-5 0.0135 10 5.16 MINOR ENSMUSG00000063646 Jakmip1 ENSMUST00000174097 ENSMUSP00000133770 TRANSLATION protein_coding stop - 3 81.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000063646 Jakmip1 ENSMUST00000173048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063646 Jakmip1 ENSMUST00000126527 - NO_TRANSLATION retained_intron ENSMUSG00000063646 Jakmip1 ENSMUST00000172917 ENSMUSP00000133913 TRANSLATION protein_coding stop - 3 182.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000063646 Jakmip1 ENSMUST00000147014 - NO_TRANSLATION retained_intron ENSMUSG00000063646 Jakmip1 ENSMUST00000201223 - NO_TRANSLATION retained_intron ENSMUSG00000063646 Jakmip1 ENSMUST00000212047 ENSMUSP00000148287 TRANSLATION protein_coding - - 5 194.0 0.0 0.0 0.0 244.9 0.0 -4,-5 0.0038 1 4.32 MINOR ENSMUSG00000063646 Jakmip1 ENSMUST00000173836 ENSMUSP00000133767 TRANSLATION protein_coding stop - 2 150.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029363 Rfc5 ENSMUST00000126262 - NO_TRANSLATION retained_intron ENSMUSG00000029363 Rfc5 ENSMUST00000086461 ENSMUSP00000083652 TRANSLATION protein_coding - CCDS39235.1 1 339.0 17.0 8.4 10.4 142.7 0.0 -4,-1 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000029363 Rfc5 ENSMUST00000150962 - NO_TRANSLATION retained_intron ENSMUSG00000029363 Rfc5 ENSMUST00000123392 - NO_TRANSLATION retained_intron ENSMUSG00000029363 Rfc5 ENSMUST00000129369 - NO_TRANSLATION retained_intron ENSMUSG00000029363 Rfc5 ENSMUST00000111953 ENSMUSP00000107584 TRANSLATION protein_coding - - 1 112.0 10.0 1.975 0.0 38.2 0.0 -4,-1 0.0 2 1.332 MINOR ENSMUSG00000029675 Eln ENSMUST00000202620 - NO_TRANSLATION retained_intron ENSMUSG00000029675 Eln ENSMUST00000201399 - NO_TRANSLATION retained_intron ENSMUSG00000029675 Eln ENSMUST00000201856 ENSMUSP00000144555 TRANSLATION nonsense_mediated_decay - - 5 287.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.1382 2 -2.0 MINOR ENSMUSG00000029675 Eln ENSMUST00000015138 ENSMUSP00000015138 TRANSLATION protein_coding - CCDS19725.1 1 860.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.9971 8 0.0 PRINCIPAL:1 ENSMUSG00000029675 Eln ENSMUST00000202570 - NO_TRANSLATION retained_intron ENSMUSG00000042508 Dmtf1 ENSMUST00000184888 ENSMUSP00000139164 TRANSLATION nonsense_mediated_decay - - 5 273.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000184401 ENSMUSP00000139281 TRANSLATION nonsense_mediated_decay - - 5 273.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000183525 ENSMUSP00000139339 TRANSLATION protein_coding stop - 2 191.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000184947 - NO_TRANSLATION retained_intron ENSMUSG00000042508 Dmtf1 ENSMUST00000095017 ENSMUSP00000092627 TRANSLATION protein_coding - CCDS51412.1 1 691.0 0.0 5.58 6.9 103.0 0.0 -4,-5 0.4125 1 11.746 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000183347 - NO_TRANSLATION retained_intron ENSMUSG00000042508 Dmtf1 ENSMUST00000184159 ENSMUSP00000139231 TRANSLATION nonsense_mediated_decay - - 2 410.0 0.0 5.58 0.0 103.0 0.0 -4,-5 0.0067 - -2.0 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000183448 ENSMUSP00000139042 TRANSLATION nonsense_mediated_decay - - 1 273.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000184903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042508 Dmtf1 ENSMUST00000183973 ENSMUSP00000139361 TRANSLATION protein_coding - - 5 673.0 0.0 6.38 4.4 103.0 0.0 -4,-5 0.2396 1 12.776 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000184620 ENSMUSP00000138816 TRANSLATION nonsense_mediated_decay - - 5 248.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000071921 ENSMUSP00000071815 TRANSLATION protein_coding - CCDS19088.1 1 761.0 0.0 6.38 18.5 103.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000042508 Dmtf1 ENSMUST00000183792 - NO_TRANSLATION retained_intron ENSMUSG00000042508 Dmtf1 ENSMUST00000185100 ENSMUSP00000138997 TRANSLATION protein_coding stop - 3 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000184370 ENSMUSP00000138935 TRANSLATION nonsense_mediated_decay start - 5 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000185193 - NO_TRANSLATION retained_intron ENSMUSG00000042508 Dmtf1 ENSMUST00000184372 ENSMUSP00000139191 TRANSLATION protein_coding stop - 5 232.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042508 Dmtf1 ENSMUST00000184120 ENSMUSP00000138861 TRANSLATION nonsense_mediated_decay - - 5 289.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029599 Ddx54 ENSMUST00000031598 ENSMUSP00000031598 TRANSLATION protein_coding - CCDS39241.1 1 874.0 14.0 6.65 2.1 306.7 0.0 -4,-7 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000029599 Ddx54 ENSMUST00000201698 - NO_TRANSLATION retained_intron ENSMUSG00000029599 Ddx54 ENSMUST00000201616 - NO_TRANSLATION retained_intron ENSMUSG00000029599 Ddx54 ENSMUST00000202672 - NO_TRANSLATION retained_intron ENSMUSG00000028933 Xrcc2 ENSMUST00000114922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028933 Xrcc2 ENSMUST00000030773 ENSMUSP00000030773 TRANSLATION protein_coding - CCDS19135.1 1 278.0 7.0 0.4 19.5 61.3 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000028933 Xrcc2 ENSMUST00000131308 - NO_TRANSLATION retained_intron ENSMUSG00000028933 Xrcc2 ENSMUST00000134972 ENSMUSP00000143032 TRANSLATION protein_coding - - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000072822 Pramel37 ENSMUST00000094587 ENSMUSP00000092168 TRANSLATION protein_coding - CCDS39162.1 1 481.0 2.0 2.3 0.4 0.0 0.0 -4,-7 0.9834 - 8.0 PRINCIPAL:1 ENSMUSG00000029624 Ptcd1 ENSMUST00000161390 ENSMUSP00000125276 TRANSLATION protein_coding stop - 3 20.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000029624 Ptcd1 ENSMUST00000031628 ENSMUSP00000031628 TRANSLATION protein_coding - CCDS19858.1 1 695.0 0.0 2.04 0.1 89.5 0.0 -4,-1 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000036565 Ttyh3 ENSMUST00000200302 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036565 Ttyh3 ENSMUST00000042661 ENSMUSP00000037447 TRANSLATION protein_coding - CCDS19822.1 1 524.0 0.0 0.0 18.5 599.1 4.0 -4,-7 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000036565 Ttyh3 ENSMUST00000199157 ENSMUSP00000143587 TRANSLATION protein_coding start - 3 107.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036565 Ttyh3 ENSMUST00000198765 - NO_TRANSLATION retained_intron ENSMUSG00000036565 Ttyh3 ENSMUST00000197452 ENSMUSP00000142655 TRANSLATION protein_coding - CCDS80450.1 1 479.0 0.0 0.0 0.3 599.1 4.0 -4,-7 0.2135 5 6.0 MINOR ENSMUSG00000036565 Ttyh3 ENSMUST00000198704 - NO_TRANSLATION retained_intron ENSMUSG00000054417 Cyp3a44 ENSMUST00000067479 ENSMUSP00000069932 TRANSLATION protein_coding - CCDS19864.1 1 504.0 30.0 11.55 12.3 440.1 0.0 -1,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000023284 Zfp605 ENSMUST00000147631 ENSMUSP00000122236 TRANSLATION protein_coding stop - 3 133.0 2.0 1.2 0.0 78.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023284 Zfp605 ENSMUST00000086686 ENSMUSP00000083891 TRANSLATION protein_coding - CCDS51605.1 3 694.0 58.0 2.0 0.0 287.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000023284 Zfp605 ENSMUST00000144089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023284 Zfp605 ENSMUST00000112528 ENSMUSP00000108147 TRANSLATION protein_coding - CCDS51605.1 1 694.0 58.0 2.0 0.0 287.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000000600 Krit1 ENSMUST00000197611 - NO_TRANSLATION retained_intron ENSMUSG00000000600 Krit1 ENSMUST00000080085 ENSMUSP00000078985 TRANSLATION protein_coding - CCDS39002.1 1 736.0 0.0 11.6175 20.5 397.1 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000000600 Krit1 ENSMUST00000200386 ENSMUSP00000143559 TRANSLATION protein_coding - - 5 647.0 0.0 9.1175 0.0 386.9 0.0 -4,-5 0.0099 10 6.39 MINOR ENSMUSG00000000600 Krit1 ENSMUST00000171023 ENSMUSP00000132375 TRANSLATION protein_coding - CCDS51409.1 1 697.0 0.0 10.3675 1.1 397.1 0.0 -4,-5 0.1943 13 9.518 MINOR ENSMUSG00000000600 Krit1 ENSMUST00000199234 - NO_TRANSLATION retained_intron ENSMUSG00000000600 Krit1 ENSMUST00000196098 - NO_TRANSLATION retained_intron ENSMUSG00000000600 Krit1 ENSMUST00000199845 - NO_TRANSLATION retained_intron ENSMUSG00000000600 Krit1 ENSMUST00000200577 ENSMUSP00000143776 TRANSLATION nonsense_mediated_decay - - 1 329.0 0.0 2.8675 0.0 285.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000000600 Krit1 ENSMUST00000200004 - NO_TRANSLATION retained_intron ENSMUSG00000000600 Krit1 ENSMUST00000197742 - NO_TRANSLATION retained_intron ENSMUSG00000000600 Krit1 ENSMUST00000198079 ENSMUSP00000142657 TRANSLATION protein_coding stop - 3 132.0 0.0 1.55 0.0 133.6 0.0 0,-4 0.0008 1 -2.0 MINOR ENSMUSG00000000600 Krit1 ENSMUST00000199475 - NO_TRANSLATION retained_intron ENSMUSG00000029648 Flt1 ENSMUST00000031652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029648 Flt1 ENSMUST00000110529 ENSMUSP00000106158 TRANSLATION protein_coding - - 1 688.0 0.0 9.812 1.1 106.6 0.0 0,-3 0.024 5 0.03 MINOR ENSMUSG00000029648 Flt1 ENSMUST00000142477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029648 Flt1 ENSMUST00000031653 ENSMUSP00000031653 TRANSLATION protein_coding - CCDS19879.1 1 1333.0 20.0 18.43 7.6 522.5 0.0 0,-3 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000029648 Flt1 ENSMUST00000200895 - NO_TRANSLATION retained_intron ENSMUSG00000029648 Flt1 ENSMUST00000125272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028958 Tmub1 ENSMUST00000123167 ENSMUSP00000122487 TRANSLATION protein_coding stop - 2 122.0 0.0 0.2 0.0 0.0 1.0 -1,-4 0.0015 2 -2.0 MINOR ENSMUSG00000028958 Tmub1 ENSMUST00000127194 ENSMUSP00000123173 TRANSLATION protein_coding stop - 3 203.0 0.0 1.53 0.0 32.5 1.0 -1,-4 0.0669 4 -2.0 MINOR ENSMUSG00000028958 Tmub1 ENSMUST00000115036 ENSMUSP00000110688 TRANSLATION protein_coding - - 5 260.0 0.0 1.53 0.0 32.5 2.0 -4,-7 0.065 4 12.0 MINOR ENSMUSG00000028958 Tmub1 ENSMUST00000030799 ENSMUSP00000030799 TRANSLATION protein_coding - CCDS19121.1 1 245.0 0.0 1.53 10.2 32.5 2.0 -1,-4 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000028958 Tmub1 ENSMUST00000238335 ENSMUSP00000158761 TRANSLATION protein_coding - - - 352.0 0.0 0.53 0.0 0.0 1.0 -1,-4 0.0015 3 2.076 MINOR ENSMUSG00000028958 Tmub1 ENSMUST00000115033 ENSMUSP00000110685 TRANSLATION protein_coding - CCDS19121.1 5 245.0 0.0 1.53 10.2 32.5 2.0 -1,-4 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000029229 Chic2 ENSMUST00000075452 ENSMUSP00000074903 TRANSLATION protein_coding - CCDS19349.1 1 165.0 0.0 3.85 28.5 40.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000029229 Chic2 ENSMUST00000162397 - NO_TRANSLATION retained_intron ENSMUSG00000029659 Medag ENSMUST00000201588 - NO_TRANSLATION retained_intron ENSMUSG00000029659 Medag ENSMUST00000201083 ENSMUSP00000144535 TRANSLATION protein_coding - - 1 189.0 0.0 0.0 1.6 0.0 0.0 -4,-7 0.1801 1 0.24 MINOR ENSMUSG00000029659 Medag ENSMUST00000093110 ENSMUSP00000090798 TRANSLATION protein_coding - CCDS19884.1 1 303.0 0.0 0.0 6.0 0.0 0.0 -4,-6 1.0 2 2.0 PRINCIPAL:1 ENSMUSG00000031558 Slit2 ENSMUST00000173646 - NO_TRANSLATION retained_intron ENSMUSG00000031558 Slit2 ENSMUST00000173686 ENSMUSP00000133382 TRANSLATION nonsense_mediated_decay start - 3 150.0 8.0 1.45 0.0 88.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031558 Slit2 ENSMUST00000173671 - NO_TRANSLATION retained_intron ENSMUSG00000031558 Slit2 ENSMUST00000173303 - NO_TRANSLATION retained_intron ENSMUSG00000031558 Slit2 ENSMUST00000170109 ENSMUSP00000127615 TRANSLATION protein_coding - - 5 1533.0 18.0 26.61 10.0 744.5 0.0 1,-3 0.8879 20 16.673 ALTERNATIVE:1 ENSMUSG00000031558 Slit2 ENSMUST00000172998 - NO_TRANSLATION retained_intron ENSMUSG00000031558 Slit2 ENSMUST00000173774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031558 Slit2 ENSMUST00000033967 ENSMUSP00000033967 TRANSLATION nonsense_mediated_decay - - 1 851.0 0.0 19.63 0.0 456.1 0.0 1,-3 0.0069 9 -2.0 MINOR ENSMUSG00000031558 Slit2 ENSMUST00000172824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031558 Slit2 ENSMUST00000174421 ENSMUSP00000134263 TRANSLATION protein_coding - CCDS71586.1 1 1542.0 18.0 26.61 4.6 740.0 0.0 1,-3 0.6377 20 15.068 MINOR ENSMUSG00000031558 Slit2 ENSMUST00000174313 ENSMUSP00000133912 TRANSLATION protein_coding - CCDS71588.1 1 1525.0 18.0 26.412 11.0 744.5 0.0 1,-3 0.9993 20 16.574 ALTERNATIVE:1 ENSMUSG00000031558 Slit2 ENSMUST00000197400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031558 Slit2 ENSMUST00000196024 - NO_TRANSLATION retained_intron ENSMUSG00000031558 Slit2 ENSMUST00000197737 - NO_TRANSLATION retained_intron ENSMUSG00000031558 Slit2 ENSMUST00000172493 ENSMUSP00000134655 TRANSLATION protein_coding start/stop - 5 255.0 10.0 6.395 0.0 125.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031558 Slit2 ENSMUST00000172561 - NO_TRANSLATION retained_intron ENSMUSG00000031558 Slit2 ENSMUST00000172484 - NO_TRANSLATION retained_intron ENSMUSG00000031558 Slit2 ENSMUST00000174061 - NO_TRANSLATION retained_intron ENSMUSG00000031558 Slit2 ENSMUST00000174658 ENSMUSP00000134359 TRANSLATION nonsense_mediated_decay start - 5 118.0 0.0 3.58 0.0 51.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000031558 Slit2 ENSMUST00000174487 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031558 Slit2 ENSMUST00000199024 - NO_TRANSLATION retained_intron ENSMUSG00000031558 Slit2 ENSMUST00000173107 ENSMUSP00000133840 TRANSLATION protein_coding - CCDS19280.1 1 1521.0 18.0 26.412 11.1 744.5 0.0 1,-3 1.0 20 16.604 PRINCIPAL:4 ENSMUSG00000031558 Slit2 ENSMUST00000173926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029163 Emilin1 ENSMUST00000201169 - NO_TRANSLATION retained_intron ENSMUSG00000029163 Emilin1 ENSMUST00000031055 ENSMUSP00000031055 TRANSLATION protein_coding - CCDS19167.1 1 1017.0 0.0 1.53 9.9 132.8 0.0 3,-2 1.0 27 15.0 PRINCIPAL:1 ENSMUSG00000029163 Emilin1 ENSMUST00000202368 - NO_TRANSLATION retained_intron ENSMUSG00000029138 Ccdc121 ENSMUST00000031020 ENSMUSP00000031020 TRANSLATION protein_coding - CCDS19184.1 1 437.0 0.0 0.0 0.0 250.2 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000029138 Ccdc121 ENSMUST00000202441 - NO_TRANSLATION retained_intron ENSMUSG00000061707 Gm4871 ENSMUST00000071421 ENSMUSP00000071368 TRANSLATION protein_coding - CCDS51695.1 1 314.0 0.0 2.5 0.0 32.7 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029409 U90926 ENSMUST00000202847 - NO_TRANSLATION retained_intron ENSMUSG00000029409 U90926 ENSMUST00000201332 ENSMUSP00000159852 TRANSLATION protein_coding - - 1 87.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.6274 - 0.0 PRINCIPAL:1 ENSMUSG00000075598 Smok3c ENSMUST00000178402 ENSMUSP00000140749 TRANSLATION protein_coding - CCDS80444.1 - 504.0 18.0 0.5 0.1 239.1 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000075598 Smok3c ENSMUST00000110967 ENSMUSP00000141020 TRANSLATION protein_coding - CCDS80444.1 1 504.0 18.0 0.5 0.1 239.1 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000079562 Maea ENSMUST00000202941 - NO_TRANSLATION retained_intron ENSMUSG00000079562 Maea ENSMUST00000200716 ENSMUSP00000144584 TRANSLATION protein_coding stop - 5 147.0 0.0 3.25 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000079562 Maea ENSMUST00000200882 ENSMUSP00000144587 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000079562 Maea ENSMUST00000114449 ENSMUSP00000110093 TRANSLATION protein_coding - CCDS39063.1 1 396.0 2.0 9.33 31.2 106.2 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000079562 Maea ENSMUST00000202113 ENSMUSP00000144238 TRANSLATION protein_coding stop - 3 53.0 0.0 1.66 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079562 Maea ENSMUST00000202839 - NO_TRANSLATION retained_intron ENSMUSG00000029432 Nipsnap2 ENSMUST00000135160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029432 Nipsnap2 ENSMUST00000124342 ENSMUSP00000117705 TRANSLATION nonsense_mediated_decay - CCDS19698.1 2 281.0 0.0 6.16 22.5 108.3 0.0 -3,1 1.0 - -2.0 MINOR ENSMUSG00000029432 Nipsnap2 ENSMUST00000137604 - NO_TRANSLATION retained_intron ENSMUSG00000029432 Nipsnap2 ENSMUST00000195946 ENSMUSP00000142916 TRANSLATION nonsense_mediated_decay - - 5 111.0 0.0 1.25 0.0 0.0 0.0 -3,1 0.0004 4 -2.0 MINOR ENSMUSG00000029432 Nipsnap2 ENSMUST00000186265 ENSMUSP00000141131 TRANSLATION protein_coding - CCDS19698.1 2 281.0 0.0 6.16 22.5 108.3 0.0 -3,1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000029432 Nipsnap2 ENSMUST00000086046 ENSMUSP00000083211 TRANSLATION protein_coding - CCDS19698.1 1 281.0 0.0 6.16 22.5 108.3 0.0 -3,1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000010721 Lmbr1 ENSMUST00000055195 ENSMUSP00000058405 TRANSLATION protein_coding - CCDS19148.1 1 490.0 0.0 0.0 22.2 316.3 16.0 -4,-7 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000010721 Lmbr1 ENSMUST00000198105 ENSMUSP00000142755 TRANSLATION protein_coding - - 1 463.0 0.0 0.0 0.0 260.7 15.0 -4,-7 0.0139 1 2.664 MINOR ENSMUSG00000010721 Lmbr1 ENSMUST00000196321 ENSMUSP00000143348 TRANSLATION protein_coding - - 1 367.0 0.0 0.0 7.4 209.1 13.0 -3,-6 0.1614 1 1.208 MINOR ENSMUSG00000010721 Lmbr1 ENSMUST00000200564 ENSMUSP00000143316 TRANSLATION protein_coding - - 5 313.0 0.0 0.0 1.0 172.2 12.0 -3,-6 0.0169 1 0.0 MINOR ENSMUSG00000010721 Lmbr1 ENSMUST00000198367 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010721 Lmbr1 ENSMUST00000179191 ENSMUSP00000136160 TRANSLATION protein_coding - - 5 462.0 0.0 0.0 0.0 257.9 15.0 -4,-7 0.0088 1 2.496 MINOR ENSMUSG00000010721 Lmbr1 ENSMUST00000200149 ENSMUSP00000142987 TRANSLATION nonsense_mediated_decay start - 3 110.0 0.0 0.0 0.0 38.8 2.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000066894 Vsig10 ENSMUST00000145052 - NO_TRANSLATION retained_intron ENSMUSG00000066894 Vsig10 ENSMUST00000111967 ENSMUSP00000107598 TRANSLATION protein_coding - CCDS19603.2 5 558.0 0.0 2.25 0.0 77.6 0.0 2,1 0.5919 4 8.0 ALTERNATIVE:2 ENSMUSG00000066894 Vsig10 ENSMUST00000147182 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066894 Vsig10 ENSMUST00000128524 - NO_TRANSLATION retained_intron ENSMUSG00000066894 Vsig10 ENSMUST00000086464 ENSMUSP00000083655 TRANSLATION protein_coding - - 5 531.0 0.0 2.25 0.4 77.6 0.0 2,-2 0.8237 4 8.0 PRINCIPAL:4 ENSMUSG00000066894 Vsig10 ENSMUST00000139026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039934 Gsap ENSMUST00000197404 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039934 Gsap ENSMUST00000198071 ENSMUSP00000142407 TRANSLATION nonsense_mediated_decay - - 1 172.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000039934 Gsap ENSMUST00000036031 ENSMUSP00000043679 TRANSLATION protein_coding - CCDS39021.1 1 858.0 0.0 0.0 0.7 133.2 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000039934 Gsap ENSMUST00000198937 ENSMUSP00000142986 TRANSLATION protein_coding stop - 1 727.0 0.0 0.0 0.0 133.2 0.0 -4,-7 0.1028 - -2.0 MINOR ENSMUSG00000039934 Gsap ENSMUST00000199553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039934 Gsap ENSMUST00000195969 ENSMUSP00000142560 TRANSLATION nonsense_mediated_decay - - 1 173.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000039934 Gsap ENSMUST00000198014 ENSMUSP00000143739 TRANSLATION nonsense_mediated_decay - - 1 197.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000039934 Gsap ENSMUST00000196035 - NO_TRANSLATION retained_intron ENSMUSG00000039934 Gsap ENSMUST00000198930 ENSMUSP00000142596 TRANSLATION protein_coding start - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000039934 Gsap ENSMUST00000197522 - NO_TRANSLATION retained_intron ENSMUSG00000029154 Cwh43 ENSMUST00000065543 ENSMUSP00000069563 TRANSLATION protein_coding - - 1 613.0 0.0 0.0 0.0 0.0 10.0 -2,-5 0.0688 14 0.0 MINOR ENSMUSG00000029154 Cwh43 ENSMUST00000135820 - NO_TRANSLATION retained_intron ENSMUSG00000029154 Cwh43 ENSMUST00000031040 ENSMUSP00000031040 TRANSLATION protein_coding - CCDS19341.1 1 699.0 0.0 0.0 11.2 0.0 12.0 -2,-5 1.0 14 3.0 PRINCIPAL:1 ENSMUSG00000089992 G6pd2 ENSMUST00000053876 ENSMUSP00000131163 TRANSLATION protein_coding - CCDS19297.1 - 513.0 34.0 1.0 13.3 572.3 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000063935 Zar1 ENSMUST00000202174 ENSMUSP00000144079 TRANSLATION protein_coding start - 3 204.0 4.0 0.8 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000063935 Zar1 ENSMUST00000073528 ENSMUSP00000073221 TRANSLATION protein_coding - CCDS19331.1 1 361.0 10.0 2.55 0.1 34.6 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000063935 Zar1 ENSMUST00000200883 - NO_TRANSLATION retained_intron ENSMUSG00000068082 Grxcr1 ENSMUST00000094715 ENSMUSP00000092305 TRANSLATION protein_coding - - 1 290.0 4.0 0.95 13.1 33.8 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000029576 Radil ENSMUST00000139824 - NO_TRANSLATION retained_intron ENSMUSG00000029576 Radil ENSMUST00000063635 ENSMUSP00000064539 TRANSLATION protein_coding - CCDS19827.1 1 1070.0 0.0 4.895 4.6 199.0 0.0 -4,-2 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000029576 Radil ENSMUST00000129212 ENSMUSP00000115800 TRANSLATION protein_coding stop - 3 107.0 0.0 0.8 0.0 37.8 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000029576 Radil ENSMUST00000085758 ENSMUSP00000082910 TRANSLATION protein_coding - CCDS80453.1 2 1099.0 0.0 4.895 0.1 199.0 0.0 -4,-7 0.4932 12 12.0 MINOR ENSMUSG00000029576 Radil ENSMUST00000150380 - NO_TRANSLATION retained_intron ENSMUSG00000029576 Radil ENSMUST00000139278 ENSMUSP00000118477 TRANSLATION protein_coding stop - 3 80.0 0.0 0.2 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000029576 Radil ENSMUST00000110784 ENSMUSP00000106411 TRANSLATION protein_coding - - 1 830.0 0.0 3.565 0.0 125.4 0.0 -4,-7 0.0083 8 4.926 MINOR ENSMUSG00000029576 Radil ENSMUST00000110785 ENSMUSP00000106412 TRANSLATION protein_coding - CCDS71698.1 1 1093.0 0.0 4.895 0.0 199.0 0.0 -4,-2 0.4848 12 12.0 MINOR ENSMUSG00000042216 Sgsm1 ENSMUST00000147856 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042216 Sgsm1 ENSMUST00000138266 - NO_TRANSLATION retained_intron ENSMUSG00000042216 Sgsm1 ENSMUST00000140981 - NO_TRANSLATION retained_intron ENSMUSG00000042216 Sgsm1 ENSMUST00000145708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042216 Sgsm1 ENSMUST00000154248 ENSMUSP00000114932 TRANSLATION protein_coding stop - 5 706.0 0.0 2.35 0.0 127.0 0.0 -4,-6 0.0017 10 -2.0 MINOR ENSMUSG00000042216 Sgsm1 ENSMUST00000156340 - NO_TRANSLATION retained_intron ENSMUSG00000042216 Sgsm1 ENSMUST00000112325 ENSMUSP00000107944 TRANSLATION protein_coding - CCDS57374.1 1 677.0 0.0 2.35 0.0 127.0 0.0 -4,-6 0.0103 11 1.02 MINOR ENSMUSG00000042216 Sgsm1 ENSMUST00000112324 ENSMUSP00000107943 TRANSLATION protein_coding - - 1 257.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 2 0.0 MINOR ENSMUSG00000042216 Sgsm1 ENSMUST00000048112 ENSMUSP00000046544 TRANSLATION protein_coding - CCDS39218.1 1 1093.0 0.0 4.84 7.6 240.2 0.0 -4,-6 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000042216 Sgsm1 ENSMUST00000057209 ENSMUSP00000084106 TRANSLATION protein_coding - CCDS84935.1 1 806.0 0.0 3.24 0.0 113.2 0.0 -4,-6 0.0389 5 2.802 MINOR ENSMUSG00000060371 Caln1 ENSMUST00000111287 ENSMUSP00000106918 TRANSLATION protein_coding - CCDS19714.1 1 219.0 12.0 2.56 36.2 51.8 2.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000060371 Caln1 ENSMUST00000141131 ENSMUSP00000144225 TRANSLATION protein_coding stop - 3 70.0 5.0 1.3 0.0 36.8 0.0 -4,-6 0.0006 - -2.0 MINOR ENSMUSG00000060371 Caln1 ENSMUST00000111288 ENSMUSP00000106919 TRANSLATION protein_coding - CCDS19714.1 1 219.0 12.0 2.56 36.2 51.8 2.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000060371 Caln1 ENSMUST00000202728 ENSMUSP00000143823 TRANSLATION protein_coding stop - 3 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060371 Caln1 ENSMUST00000086029 ENSMUSP00000083193 TRANSLATION protein_coding - CCDS51656.1 1 261.0 12.0 2.56 14.7 51.8 2.0 -4,-5 0.4797 - 19.556 MINOR ENSMUSG00000042453 Reln ENSMUST00000199034 - NO_TRANSLATION retained_intron ENSMUSG00000042453 Reln ENSMUST00000200318 - NO_TRANSLATION retained_intron ENSMUSG00000042453 Reln ENSMUST00000162876 ENSMUSP00000124077 TRANSLATION nonsense_mediated_decay start - 3 47.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0069 - -2.0 MINOR ENSMUSG00000042453 Reln ENSMUST00000159768 - NO_TRANSLATION retained_intron ENSMUSG00000042453 Reln ENSMUST00000160791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042453 Reln ENSMUST00000159741 - NO_TRANSLATION retained_intron ENSMUSG00000042453 Reln ENSMUST00000161353 - NO_TRANSLATION retained_intron ENSMUSG00000042453 Reln ENSMUST00000162622 - NO_TRANSLATION retained_intron ENSMUSG00000042453 Reln ENSMUST00000062372 ENSMUSP00000058025 TRANSLATION protein_coding - CCDS80217.1 5 3459.0 21.0 33.151 9.2 30.4 0.0 3,-3 0.9997 27 15.0 ALTERNATIVE:1 ENSMUSG00000042453 Reln ENSMUST00000200667 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042453 Reln ENSMUST00000160707 - NO_TRANSLATION retained_intron ENSMUSG00000042453 Reln ENSMUST00000161356 ENSMUSP00000124052 TRANSLATION protein_coding - CCDS39023.1 5 3461.0 21.0 33.151 9.2 30.4 0.0 3,-3 1.0 27 15.0 PRINCIPAL:4 ENSMUSG00000042453 Reln ENSMUST00000161782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042453 Reln ENSMUST00000162427 - NO_TRANSLATION retained_intron ENSMUSG00000042453 Reln ENSMUST00000162637 - NO_TRANSLATION retained_intron ENSMUSG00000067220 Cnga1 ENSMUST00000126799 ENSMUSP00000143377 TRANSLATION protein_coding - - 1 91.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000067220 Cnga1 ENSMUST00000087213 ENSMUSP00000084464 TRANSLATION protein_coding - CCDS19333.1 1 684.0 13.0 3.0 5.2 276.4 2.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000067220 Cnga1 ENSMUST00000169997 ENSMUSP00000132329 TRANSLATION protein_coding - CCDS19333.1 5 684.0 13.0 3.0 5.2 276.4 2.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000067220 Cnga1 ENSMUST00000135701 ENSMUSP00000119886 TRANSLATION protein_coding stop - 1 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000067220 Cnga1 ENSMUST00000202230 - NO_TRANSLATION retained_intron ENSMUSG00000067220 Cnga1 ENSMUST00000201463 ENSMUSP00000143881 TRANSLATION protein_coding - CCDS19333.1 1 684.0 13.0 3.0 5.2 276.4 2.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000058153 Sez6l ENSMUST00000075387 ENSMUSP00000074847 TRANSLATION protein_coding - CCDS51617.1 1 962.0 3.0 6.408 0.4 307.1 2.0 0,-2 1.0 6 11.0 PRINCIPAL:4 ENSMUSG00000058153 Sez6l ENSMUST00000200575 ENSMUSP00000143160 TRANSLATION protein_coding start - 1 714.0 3.0 5.908 0.0 275.2 2.0 -4,-5 0.0577 4 -2.0 MINOR ENSMUSG00000058153 Sez6l ENSMUST00000197425 ENSMUSP00000143395 TRANSLATION protein_coding - CCDS80369.1 1 897.0 3.0 5.808 0.0 277.0 2.0 0,-2 0.1822 6 9.2 MINOR ENSMUSG00000058153 Sez6l ENSMUST00000212758 ENSMUSP00000148806 TRANSLATION protein_coding - - 5 887.0 3.0 5.61 0.0 277.0 2.0 0,-2 0.0737 6 8.804 MINOR ENSMUSG00000058153 Sez6l ENSMUST00000212480 ENSMUSP00000148791 TRANSLATION protein_coding - - 5 964.0 3.0 6.408 0.4 307.1 2.0 0,-2 0.5024 6 11.0 ALTERNATIVE:2 ENSMUSG00000058153 Sez6l ENSMUST00000079491 ENSMUSP00000078454 TRANSLATION protein_coding - CCDS57373.1 1 963.0 3.0 6.408 0.4 307.1 2.0 0,-2 0.9974 6 11.0 ALTERNATIVE:2 ENSMUSG00000029177 Cenpa ENSMUST00000134846 ENSMUSP00000119363 TRANSLATION nonsense_mediated_decay - - 2 39.0 0.0 0.12375 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029177 Cenpa ENSMUST00000150810 - NO_TRANSLATION retained_intron ENSMUSG00000029177 Cenpa ENSMUST00000031073 ENSMUSP00000031073 TRANSLATION nonsense_mediated_decay - - 1 39.0 0.0 0.12375 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029177 Cenpa ENSMUST00000133316 ENSMUSP00000123493 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.12375 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029177 Cenpa ENSMUST00000149759 ENSMUSP00000142915 TRANSLATION protein_coding - - 3 59.0 0.0 0.12375 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000029177 Cenpa ENSMUST00000197962 - NO_TRANSLATION retained_intron ENSMUSG00000029177 Cenpa ENSMUST00000199320 ENSMUSP00000143575 TRANSLATION protein_coding stop - 3 99.0 0.0 1.87375 0.0 70.8 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029177 Cenpa ENSMUST00000134372 - NO_TRANSLATION retained_intron ENSMUSG00000029177 Cenpa ENSMUST00000199617 ENSMUSP00000142917 TRANSLATION nonsense_mediated_decay - - 3 130.0 0.0 2.00575 0.0 67.9 0.0 -4,-7 0.0088 1 -2.0 MINOR ENSMUSG00000029177 Cenpa ENSMUST00000144742 ENSMUSP00000122831 TRANSLATION protein_coding - CCDS19162.1 1 134.0 0.0 3.37375 6.9 133.9 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000058503 Fam133b ENSMUST00000199666 ENSMUSP00000143004 TRANSLATION nonsense_mediated_decay - - 1 109.0 0.0 2.665 0.0 0.0 0.0 -4,-2 0.1271 1 -2.0 MINOR ENSMUSG00000058503 Fam133b ENSMUST00000200354 - NO_TRANSLATION retained_intron ENSMUSG00000058503 Fam133b ENSMUST00000197082 ENSMUSP00000142744 TRANSLATION protein_coding - - 5 228.0 0.0 2.665 0.0 0.0 0.0 -4,-2 0.0513 1 6.0 MINOR ENSMUSG00000058503 Fam133b ENSMUST00000195924 - NO_TRANSLATION retained_intron ENSMUSG00000058503 Fam133b ENSMUST00000115527 ENSMUSP00000111189 TRANSLATION protein_coding - CCDS39000.1 1 245.0 0.0 2.665 6.2 0.0 0.0 -4,-2 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000058503 Fam133b ENSMUST00000196059 - NO_TRANSLATION retained_intron ENSMUSG00000058503 Fam133b ENSMUST00000198598 - NO_TRANSLATION retained_intron ENSMUSG00000058503 Fam133b ENSMUST00000196499 - NO_TRANSLATION retained_intron ENSMUSG00000106918 Mrpl33 ENSMUST00000202690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000106918 Mrpl33 ENSMUST00000201719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000106918 Mrpl33 ENSMUST00000201910 ENSMUSP00000144669 TRANSLATION nonsense_mediated_decay - - 2 107.0 0.0 1.33 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000106918 Mrpl33 ENSMUST00000202953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000106918 Mrpl33 ENSMUST00000031024 ENSMUSP00000031024 TRANSLATION protein_coding - CCDS39056.1 1 65.0 0.0 1.83 33.2 26.8 0.0 -4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000106918 Mrpl33 ENSMUST00000201999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000106918 Mrpl33 ENSMUST00000201483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000106918 Mrpl33 ENSMUST00000201923 - NO_TRANSLATION retained_intron ENSMUSG00000106918 Mrpl33 ENSMUST00000202655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000106918 Mrpl33 ENSMUST00000201620 - NO_TRANSLATION retained_intron ENSMUSG00000106918 Mrpl33 ENSMUST00000202243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067724 Gbx1 ENSMUST00000088311 ENSMUSP00000085651 TRANSLATION protein_coding - CCDS19123.1 1 418.0 0.0 0.6 0.1 81.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000053856 Dnajc5g ENSMUST00000066544 ENSMUSP00000064587 TRANSLATION protein_coding - CCDS19172.1 1 165.0 0.0 2.6 0.4 89.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000053856 Dnajc5g ENSMUST00000201740 ENSMUSP00000144137 TRANSLATION protein_coding - CCDS84862.1 3 139.0 0.0 2.0 0.0 89.2 0.0 -4,-7 0.1252 - 10.614 MINOR ENSMUSG00000053856 Dnajc5g ENSMUST00000202433 ENSMUSP00000143997 TRANSLATION nonsense_mediated_decay - - 3 75.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000053856 Dnajc5g ENSMUST00000202760 ENSMUSP00000144548 TRANSLATION nonsense_mediated_decay - - 3 75.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000005474 Myl10 ENSMUST00000196068 ENSMUSP00000142570 TRANSLATION protein_coding - CCDS80433.1 1 134.0 5.0 2.649 0.0 28.6 0.0 -4,-5 0.046 1 11.316 MINOR ENSMUSG00000005474 Myl10 ENSMUST00000005611 ENSMUSP00000005611 TRANSLATION protein_coding - CCDS51668.1 1 147.0 9.0 4.66 17.1 28.6 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000005474 Myl10 ENSMUST00000197849 - NO_TRANSLATION retained_intron ENSMUSG00000005474 Myl10 ENSMUST00000199074 - NO_TRANSLATION retained_intron ENSMUSG00000005474 Myl10 ENSMUST00000196436 ENSMUSP00000142495 TRANSLATION protein_coding - CCDS80434.1 3 131.0 9.0 4.16 3.1 17.9 0.0 -4,-5 0.0662 - 15.274 MINOR ENSMUSG00000005474 Myl10 ENSMUST00000197186 ENSMUSP00000143165 TRANSLATION protein_coding - CCDS80434.1 1 131.0 9.0 4.16 3.1 17.9 0.0 -4,-5 0.0662 - 15.274 MINOR ENSMUSG00000028883 Sema3a ENSMUST00000196514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028883 Sema3a ENSMUST00000125629 ENSMUSP00000121710 TRANSLATION protein_coding stop - 2 72.0 0.0 1.68 0.0 0.0 0.0 2,-2 0.0034 - -2.0 MINOR ENSMUSG00000028883 Sema3a ENSMUST00000095012 ENSMUSP00000092621 TRANSLATION protein_coding - CCDS19092.1 1 772.0 0.0 13.412 24.3 529.6 0.0 2,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028883 Sema3a ENSMUST00000141968 ENSMUSP00000122621 TRANSLATION protein_coding stop - 3 62.0 0.0 1.35 0.0 0.0 0.0 2,-2 0.0015 - -2.0 MINOR ENSMUSG00000028883 Sema3a ENSMUST00000200073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028883 Sema3a ENSMUST00000195907 - NO_TRANSLATION retained_intron ENSMUSG00000028883 Sema3a ENSMUST00000030714 ENSMUSP00000030714 TRANSLATION protein_coding - CCDS19092.1 1 772.0 0.0 13.412 24.3 529.6 0.0 2,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000028883 Sema3a ENSMUST00000137798 ENSMUSP00000128153 TRANSLATION protein_coding stop - 1 688.0 0.0 13.412 0.0 529.6 0.0 2,-4 0.1068 3 -2.0 MINOR ENSMUSG00000028883 Sema3a ENSMUST00000197582 - NO_TRANSLATION retained_intron ENSMUSG00000029595 Lhx5 ENSMUST00000031591 ENSMUSP00000031591 TRANSLATION protein_coding - CCDS19617.1 1 402.0 16.0 2.8 25.4 192.3 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000002633 Shh ENSMUST00000002708 ENSMUSP00000002708 TRANSLATION protein_coding - CCDS19146.1 1 437.0 11.0 2.32 0.4 556.4 0.0 3,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000037999 Arap2 ENSMUST00000200549 - NO_TRANSLATION retained_intron ENSMUSG00000037999 Arap2 ENSMUST00000161911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037999 Arap2 ENSMUST00000076623 ENSMUSP00000075924 TRANSLATION protein_coding - CCDS51506.1 5 1703.0 4.0 9.025 0.0 449.4 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000037999 Arap2 ENSMUST00000201373 - NO_TRANSLATION retained_intron ENSMUSG00000037999 Arap2 ENSMUST00000159470 ENSMUSP00000124743 TRANSLATION protein_coding stop - 3 126.0 0.0 0.8 0.0 42.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000037999 Arap2 ENSMUST00000160620 - NO_TRANSLATION retained_intron ENSMUSG00000037999 Arap2 ENSMUST00000160419 - NO_TRANSLATION retained_intron ENSMUSG00000038044 Cct8l1 ENSMUST00000045016 ENSMUSP00000044932 TRANSLATION protein_coding - CCDS19134.1 - 562.0 0.0 0.5 0.1 380.7 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000046079 Lrrc8d ENSMUST00000156630 ENSMUSP00000116346 TRANSLATION protein_coding stop - 5 37.0 0.0 1.0 0.0 63.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046079 Lrrc8d ENSMUST00000120847 ENSMUSP00000113603 TRANSLATION protein_coding - CCDS19494.1 1 859.0 0.0 2.1 17.6 601.7 5.0 -4,-7 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000046079 Lrrc8d ENSMUST00000060531 ENSMUSP00000057293 TRANSLATION protein_coding - CCDS19494.1 1 859.0 0.0 2.1 17.6 601.7 5.0 -4,-7 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000046079 Lrrc8d ENSMUST00000127686 ENSMUSP00000117072 TRANSLATION protein_coding stop - 3 41.0 0.0 1.0 0.0 71.1 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000046079 Lrrc8d ENSMUST00000149831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046079 Lrrc8d ENSMUST00000135776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046079 Lrrc8d ENSMUST00000154807 ENSMUSP00000114662 TRANSLATION protein_coding stop - 1 93.0 0.0 1.6 0.0 111.4 3.0 -4,-7 0.0005 2 -2.0 MINOR ENSMUSG00000046079 Lrrc8d ENSMUST00000134605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046079 Lrrc8d ENSMUST00000140081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046079 Lrrc8d ENSMUST00000140608 - NO_TRANSLATION retained_intron ENSMUSG00000005374 Tbl2 ENSMUST00000201780 ENSMUSP00000144259 TRANSLATION nonsense_mediated_decay - - 3 42.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0019 1 -2.0 MINOR ENSMUSG00000005374 Tbl2 ENSMUST00000139565 ENSMUSP00000120685 TRANSLATION nonsense_mediated_decay - - 3 66.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0019 1 -2.0 MINOR ENSMUSG00000005374 Tbl2 ENSMUST00000005508 ENSMUSP00000005508 TRANSLATION nonsense_mediated_decay - - 1 153.0 0.0 1.5 0.0 37.1 0.0 0,-3 0.0017 5 -2.0 MINOR ENSMUSG00000005374 Tbl2 ENSMUST00000152013 ENSMUSP00000118691 TRANSLATION protein_coding stop - 3 190.0 0.0 3.58 0.0 37.1 0.0 -4,-5 0.0009 7 -2.0 MINOR ENSMUSG00000005374 Tbl2 ENSMUST00000153183 ENSMUSP00000115011 TRANSLATION protein_coding - CCDS19735.1 1 442.0 0.0 6.08 10.3 63.4 0.0 0,-3 1.0 20 15.0 PRINCIPAL:1 ENSMUSG00000106864 Gtf3c2 ENSMUST00000202639 ENSMUSP00000144489 TRANSLATION protein_coding - - 5 950.0 0.0 0.0 0.0 15.3 0.0 -4,-5 0.0917 11 6.0 MINOR ENSMUSG00000106864 Gtf3c2 ENSMUST00000200871 ENSMUSP00000144427 TRANSLATION protein_coding - - 3 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - 0.0 MINOR ENSMUSG00000106864 Gtf3c2 ENSMUST00000202300 ENSMUSP00000144249 TRANSLATION protein_coding stop - 2 136.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000106864 Gtf3c2 ENSMUST00000202843 - NO_TRANSLATION retained_intron ENSMUSG00000106864 Gtf3c2 ENSMUST00000202218 - NO_TRANSLATION retained_intron ENSMUSG00000106864 Gtf3c2 ENSMUST00000201428 ENSMUSP00000144212 TRANSLATION protein_coding stop - 3 175.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 2 -2.0 MINOR ENSMUSG00000106864 Gtf3c2 ENSMUST00000201087 - NO_TRANSLATION retained_intron ENSMUSG00000106864 Gtf3c2 ENSMUST00000202254 - NO_TRANSLATION retained_intron ENSMUSG00000106864 Gtf3c2 ENSMUST00000201423 - NO_TRANSLATION retained_intron ENSMUSG00000106864 Gtf3c2 ENSMUST00000088010 ENSMUSP00000085325 TRANSLATION protein_coding - CCDS39053.1 1 907.0 0.0 0.0 8.7 15.3 0.0 -4,-5 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000106864 Gtf3c2 ENSMUST00000201468 ENSMUSP00000144675 TRANSLATION protein_coding stop - 2 228.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 3 -2.0 MINOR ENSMUSG00000045348 Nyap1 ENSMUST00000061789 ENSMUSP00000058217 TRANSLATION protein_coding - CCDS19775.1 5 833.0 0.0 0.5 0.4 766.1 0.0 -4,-6 1.0 13 8.0 PRINCIPAL:4 ENSMUSG00000045348 Nyap1 ENSMUST00000118326 ENSMUSP00000113397 TRANSLATION protein_coding - CCDS19775.1 1 833.0 0.0 0.5 0.4 766.1 0.0 -4,-6 1.0 13 8.0 PRINCIPAL:4 ENSMUSG00000045348 Nyap1 ENSMUST00000149512 ENSMUSP00000114694 TRANSLATION protein_coding stop - 5 790.0 0.0 0.0 0.0 583.5 0.0 -4,-6 0.0206 12 -2.0 MINOR ENSMUSG00000045348 Nyap1 ENSMUST00000212152 ENSMUSP00000148318 TRANSLATION protein_coding - CCDS84980.1 1 832.0 0.0 0.5 0.4 763.6 0.0 -4,-6 0.8893 13 8.0 ALTERNATIVE:2 ENSMUSG00000042078 Svop ENSMUST00000149480 - NO_TRANSLATION retained_intron ENSMUSG00000042078 Svop ENSMUST00000150106 ENSMUSP00000117724 TRANSLATION protein_coding stop - 5 172.0 0.0 1.1 0.0 0.0 4.0 -4,-1 0.0038 1 -2.0 MINOR ENSMUSG00000042078 Svop ENSMUST00000058472 ENSMUSP00000050730 TRANSLATION protein_coding - CCDS39220.1 1 548.0 0.0 5.8225 29.2 141.4 13.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000042078 Svop ENSMUST00000134790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042078 Svop ENSMUST00000140151 - NO_TRANSLATION retained_intron ENSMUSG00000037822 Smim14 ENSMUST00000139122 ENSMUSP00000122363 TRANSLATION protein_coding - CCDS19309.1 1 99.0 0.0 0.0 27.9 129.7 1.0 -4,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000037822 Smim14 ENSMUST00000121661 ENSMUSP00000113456 TRANSLATION protein_coding - CCDS19309.1 3 99.0 0.0 0.0 27.9 129.7 1.0 -4,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000037822 Smim14 ENSMUST00000125954 - NO_TRANSLATION retained_intron ENSMUSG00000037822 Smim14 ENSMUST00000040532 ENSMUSP00000040511 TRANSLATION nonsense_mediated_decay - - 3 92.0 0.0 0.0 0.0 123.1 1.0 -4,-6 0.0146 1 -2.0 MINOR ENSMUSG00000037822 Smim14 ENSMUST00000135258 - NO_TRANSLATION retained_intron ENSMUSG00000037822 Smim14 ENSMUST00000149167 ENSMUSP00000118195 TRANSLATION protein_coding stop - 5 30.0 0.0 0.0 0.0 55.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037822 Smim14 ENSMUST00000200111 - NO_TRANSLATION retained_intron ENSMUSG00000037822 Smim14 ENSMUST00000198981 - NO_TRANSLATION retained_intron ENSMUSG00000037822 Smim14 ENSMUST00000144562 - NO_TRANSLATION retained_intron ENSMUSG00000029578 Wipi2 ENSMUST00000153936 - NO_TRANSLATION retained_intron ENSMUSG00000029578 Wipi2 ENSMUST00000036872 ENSMUSP00000045201 TRANSLATION protein_coding - CCDS19828.1 1 445.0 0.0 5.36375 7.9 0.0 0.0 -4,-5 0.583 12 7.2 MINOR ENSMUSG00000029578 Wipi2 ENSMUST00000110778 ENSMUSP00000106405 TRANSLATION protein_coding - - 5 425.0 0.0 5.36375 24.0 0.0 0.0 -4,-5 1.0 11 10.0 PRINCIPAL:1 ENSMUSG00000029578 Wipi2 ENSMUST00000197864 - NO_TRANSLATION retained_intron ENSMUSG00000029578 Wipi2 ENSMUST00000143980 - NO_TRANSLATION retained_intron ENSMUSG00000029204 Rhoh ENSMUST00000201533 ENSMUSP00000143810 TRANSLATION protein_coding - CCDS39100.1 1 191.0 18.0 1.0 25.9 151.9 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000029204 Rhoh ENSMUST00000202471 - NO_TRANSLATION retained_intron ENSMUSG00000029204 Rhoh ENSMUST00000202591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029204 Rhoh ENSMUST00000031106 ENSMUSP00000031106 TRANSLATION protein_coding - CCDS39100.1 1 191.0 18.0 1.0 25.9 151.9 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000042249 Grk3 ENSMUST00000199337 - NO_TRANSLATION retained_intron ENSMUSG00000042249 Grk3 ENSMUST00000195928 - NO_TRANSLATION retained_intron ENSMUSG00000042249 Grk3 ENSMUST00000197888 ENSMUSP00000142968 TRANSLATION protein_coding - - 1 556.0 17.0 15.15 0.0 303.2 0.0 -4,-5 0.0028 4 11.568 MINOR ENSMUSG00000042249 Grk3 ENSMUST00000197776 ENSMUSP00000143427 TRANSLATION protein_coding - - 1 217.0 0.0 4.4 0.0 65.2 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000042249 Grk3 ENSMUST00000200332 ENSMUSP00000142926 TRANSLATION nonsense_mediated_decay - - 1 92.0 0.0 1.9 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042249 Grk3 ENSMUST00000065167 ENSMUSP00000070445 TRANSLATION protein_coding - CCDS19545.1 1 688.0 17.0 17.15 30.4 343.7 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000029268 Ugt2a2 ENSMUST00000144144 ENSMUSP00000114842 TRANSLATION protein_coding - - 2 280.0 15.0 5.0 5.2 559.7 2.0 -4,-5 0.5348 - 10.01 MINOR ENSMUSG00000029268 Ugt2a2 ENSMUST00000079811 ENSMUSP00000078740 TRANSLATION protein_coding - CCDS19390.1 1 528.0 17.0 6.33 1.5 768.7 2.0 3,-2 1.0 - 18.238 PRINCIPAL:1 ENSMUSG00000029168 Dpysl5 ENSMUST00000127365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029168 Dpysl5 ENSMUST00000198503 - NO_TRANSLATION retained_intron ENSMUSG00000029168 Dpysl5 ENSMUST00000101442 ENSMUSP00000098985 TRANSLATION protein_coding - - 1 97.0 1.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 0.999 MINOR ENSMUSG00000029168 Dpysl5 ENSMUST00000138625 - NO_TRANSLATION retained_intron ENSMUSG00000029168 Dpysl5 ENSMUST00000114729 ENSMUSP00000110377 TRANSLATION protein_coding - CCDS39047.1 1 564.0 3.0 9.8 30.0 77.8 0.0 -4,-5 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000029168 Dpysl5 ENSMUST00000088081 ENSMUSP00000085400 TRANSLATION protein_coding - CCDS39047.1 1 564.0 3.0 9.8 30.0 77.8 0.0 -4,-5 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000029168 Dpysl5 ENSMUST00000136657 - NO_TRANSLATION retained_intron ENSMUSG00000044134 Pheta1 ENSMUST00000198271 ENSMUSP00000143110 TRANSLATION protein_coding - CCDS19642.1 1 266.0 8.0 1.4 0.0 64.5 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000044134 Pheta1 ENSMUST00000198155 ENSMUSP00000143324 TRANSLATION protein_coding stop - 2 102.0 8.0 1.0 0.0 53.9 0.0 -4,-5 0.0058 1 -2.0 MINOR ENSMUSG00000044134 Pheta1 ENSMUST00000056654 ENSMUSP00000062386 TRANSLATION protein_coding - CCDS19642.1 1 266.0 8.0 1.4 0.0 64.5 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000063430 Wscd2 ENSMUST00000180565 - NO_TRANSLATION retained_intron ENSMUSG00000063430 Wscd2 ENSMUST00000138757 - NO_TRANSLATION retained_intron ENSMUSG00000063430 Wscd2 ENSMUST00000198673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063430 Wscd2 ENSMUST00000181650 - NO_TRANSLATION retained_intron ENSMUSG00000063430 Wscd2 ENSMUST00000181294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063430 Wscd2 ENSMUST00000094452 ENSMUSP00000092021 TRANSLATION protein_coding - CCDS19550.2 1 571.0 16.0 1.16 10.5 115.2 0.0 -4,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000075552 Cyp3a41b ENSMUST00000075837 ENSMUSP00000075234 TRANSLATION protein_coding - CCDS39389.1 1 504.0 30.0 11.55 10.1 451.4 0.0 -1,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000040570 Rundc3b ENSMUST00000047485 ENSMUSP00000040108 TRANSLATION protein_coding - CCDS19083.1 1 408.0 0.0 2.355 2.5 89.6 0.0 -4,-7 0.5667 7 12.638 MINOR ENSMUSG00000040570 Rundc3b ENSMUST00000115378 ENSMUSP00000111036 TRANSLATION protein_coding - CCDS84841.1 5 457.0 0.0 2.355 5.7 89.6 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000070704 Ugt2b36 ENSMUST00000145617 ENSMUSP00000120005 TRANSLATION protein_coding stop - 5 249.0 15.0 5.58 0.0 421.5 0.0 2,-2 0.0017 2 -2.0 MINOR ENSMUSG00000070704 Ugt2b36 ENSMUST00000132667 ENSMUSP00000123024 TRANSLATION protein_coding stop - 5 265.0 15.0 5.25 0.0 314.8 0.0 2,-2 0.0017 4 -2.0 MINOR ENSMUSG00000070704 Ugt2b36 ENSMUST00000154455 - NO_TRANSLATION retained_intron ENSMUSG00000070704 Ugt2b36 ENSMUST00000094649 ENSMUSP00000092233 TRANSLATION protein_coding - CCDS19384.1 1 530.0 17.0 8.58 8.1 855.4 0.0 2,-2 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000041740 Rnf10 ENSMUST00000151085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041740 Rnf10 ENSMUST00000133276 - NO_TRANSLATION retained_intron ENSMUSG00000041740 Rnf10 ENSMUST00000040555 ENSMUSP00000041778 TRANSLATION protein_coding - CCDS80380.1 1 803.0 8.0 0.6 7.1 29.1 0.0 -4,-5 0.9989 3 16.0 ALTERNATIVE:1 ENSMUSG00000041740 Rnf10 ENSMUST00000153553 - NO_TRANSLATION retained_intron ENSMUSG00000041740 Rnf10 ENSMUST00000152613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041740 Rnf10 ENSMUST00000128954 - NO_TRANSLATION retained_intron ENSMUSG00000041740 Rnf10 ENSMUST00000202855 - NO_TRANSLATION retained_intron ENSMUSG00000041740 Rnf10 ENSMUST00000112097 ENSMUSP00000107726 TRANSLATION protein_coding - CCDS80381.1 1 805.0 8.0 0.6 7.1 29.1 0.0 -4,-5 0.9989 3 16.0 ALTERNATIVE:1 ENSMUSG00000041740 Rnf10 ENSMUST00000200923 - NO_TRANSLATION retained_intron ENSMUSG00000041740 Rnf10 ENSMUST00000139853 ENSMUSP00000131696 TRANSLATION nonsense_mediated_decay start - 5 656.0 8.0 0.6 0.0 29.1 0.0 -4,-5 0.0609 3 -2.0 MINOR ENSMUSG00000041740 Rnf10 ENSMUST00000112096 ENSMUSP00000107725 TRANSLATION protein_coding - CCDS19584.1 1 804.0 8.0 0.6 7.1 29.1 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:4 ENSMUSG00000036599 Chst12 ENSMUST00000043050 ENSMUSP00000041663 TRANSLATION protein_coding - CCDS19820.1 1 419.0 0.0 1.2 9.4 215.4 1.0 -1,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036599 Chst12 ENSMUST00000124142 ENSMUSP00000114835 TRANSLATION protein_coding stop - 2 178.0 0.0 0.2 0.0 0.0 1.0 -1,-5 0.0015 - -2.0 MINOR ENSMUSG00000061898 Rbak ENSMUST00000166382 - NO_TRANSLATION retained_intron ENSMUSG00000061898 Rbak ENSMUST00000199880 - NO_TRANSLATION retained_intron ENSMUSG00000061898 Rbak ENSMUST00000165318 ENSMUSP00000128731 TRANSLATION protein_coding - CCDS19835.1 1 711.0 59.0 0.8 1.1 408.4 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000061898 Rbak ENSMUST00000049861 ENSMUSP00000059273 TRANSLATION protein_coding - CCDS19835.1 1 711.0 59.0 0.8 1.1 408.4 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000005907 Pex1 ENSMUST00000006061 ENSMUSP00000006061 TRANSLATION protein_coding - CCDS19065.1 1 1244.0 32.0 10.783 1.2 403.0 0.0 -3,-1 0.4968 24 18.058 MINOR ENSMUSG00000005907 Pex1 ENSMUST00000196432 - NO_TRANSLATION retained_intron ENSMUSG00000005907 Pex1 ENSMUST00000196124 - NO_TRANSLATION retained_intron ENSMUSG00000005907 Pex1 ENSMUST00000199213 - NO_TRANSLATION retained_intron ENSMUSG00000005907 Pex1 ENSMUST00000121291 ENSMUSP00000113304 TRANSLATION protein_coding - CCDS80201.1 5 1284.0 32.0 10.783 7.8 403.0 0.0 -3,-1 1.0 25 20.0 PRINCIPAL:1 ENSMUSG00000005907 Pex1 ENSMUST00000197167 - NO_TRANSLATION retained_intron ENSMUSG00000005907 Pex1 ENSMUST00000142516 ENSMUSP00000116474 TRANSLATION protein_coding stop - 3 69.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005907 Pex1 ENSMUST00000199035 - NO_TRANSLATION retained_intron ENSMUSG00000005907 Pex1 ENSMUST00000123268 - NO_TRANSLATION retained_intron ENSMUSG00000005907 Pex1 ENSMUST00000126545 ENSMUSP00000121813 TRANSLATION protein_coding start/stop - 3 213.0 10.0 1.586 0.0 39.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000005907 Pex1 ENSMUST00000143959 - NO_TRANSLATION retained_intron ENSMUSG00000005907 Pex1 ENSMUST00000195894 ENSMUSP00000142620 TRANSLATION protein_coding - - 3 143.0 0.0 2.25 0.0 122.6 0.0 -3,-1 0.0 2 0.0 MINOR ENSMUSG00000005907 Pex1 ENSMUST00000196692 - NO_TRANSLATION retained_intron ENSMUSG00000005907 Pex1 ENSMUST00000143132 ENSMUSP00000116645 TRANSLATION nonsense_mediated_decay start - 5 76.0 0.0 0.464 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000040464 Gtpbp10 ENSMUST00000152950 - NO_TRANSLATION retained_intron ENSMUSG00000040464 Gtpbp10 ENSMUST00000198799 ENSMUSP00000143003 TRANSLATION protein_coding - - - 44.0 0.0 0.0 0.0 0.0 0.0 -2,0 0.0007 - 0.0 MINOR ENSMUSG00000040464 Gtpbp10 ENSMUST00000198421 - NO_TRANSLATION retained_intron ENSMUSG00000040464 Gtpbp10 ENSMUST00000088842 ENSMUSP00000086225 TRANSLATION protein_coding - - 5 287.0 18.0 3.774 0.0 68.3 0.0 -4,-7 0.0 7 11.076 MINOR ENSMUSG00000040464 Gtpbp10 ENSMUST00000127670 - NO_TRANSLATION retained_intron ENSMUSG00000040464 Gtpbp10 ENSMUST00000115441 ENSMUSP00000111101 TRANSLATION protein_coding - CCDS39006.1 1 366.0 20.0 4.414 0.0 140.2 0.0 -4,-7 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000040464 Gtpbp10 ENSMUST00000119521 ENSMUSP00000113648 TRANSLATION protein_coding stop - 5 241.0 10.0 3.004 0.0 84.5 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000040464 Gtpbp10 ENSMUST00000126855 ENSMUSP00000118395 TRANSLATION nonsense_mediated_decay start - 5 78.0 4.0 0.364 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000040464 Gtpbp10 ENSMUST00000152984 - NO_TRANSLATION retained_intron ENSMUSG00000040464 Gtpbp10 ENSMUST00000128887 ENSMUSP00000121101 TRANSLATION nonsense_mediated_decay start - 3 116.0 6.0 0.574 0.0 34.7 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000040464 Gtpbp10 ENSMUST00000147244 ENSMUSP00000119250 TRANSLATION nonsense_mediated_decay - - 5 76.0 4.0 0.364 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000062604 Srpk2 ENSMUST00000197985 ENSMUSP00000142554 TRANSLATION protein_coding stop - 3 129.0 10.0 2.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062604 Srpk2 ENSMUST00000200173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062604 Srpk2 ENSMUST00000198661 ENSMUSP00000142494 TRANSLATION protein_coding stop - 2 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000062604 Srpk2 ENSMUST00000196592 - NO_TRANSLATION retained_intron ENSMUSG00000062604 Srpk2 ENSMUST00000088392 ENSMUSP00000085734 TRANSLATION protein_coding - CCDS39024.1 1 682.0 20.0 10.33 0.0 144.6 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000062604 Srpk2 ENSMUST00000196388 ENSMUSP00000143453 TRANSLATION protein_coding stop - 3 134.0 11.0 3.75 0.0 62.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000062604 Srpk2 ENSMUST00000196929 ENSMUSP00000143216 TRANSLATION nonsense_mediated_decay - - 1 156.0 11.0 4.25 0.0 62.6 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000062604 Srpk2 ENSMUST00000198719 - NO_TRANSLATION retained_intron ENSMUSG00000062604 Srpk2 ENSMUST00000197622 - NO_TRANSLATION retained_intron ENSMUSG00000062604 Srpk2 ENSMUST00000198549 ENSMUSP00000142781 TRANSLATION protein_coding stop - 5 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070933 Speer4d ENSMUST00000119100 ENSMUSP00000113289 TRANSLATION protein_coding - - 2 160.0 0.0 2.0 0.0 37.6 0.0 -4,-5 0.0004 - 7.314 MINOR ENSMUSG00000070933 Speer4d ENSMUST00000095006 ENSMUSP00000092615 TRANSLATION protein_coding - CCDS19095.1 1 212.0 0.0 2.4 0.0 97.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039156 Stim2 ENSMUST00000202342 - NO_TRANSLATION retained_intron ENSMUSG00000039156 Stim2 ENSMUST00000201198 ENSMUSP00000144078 TRANSLATION protein_coding start - 1 384.0 0.0 2.33 0.0 100.6 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000039156 Stim2 ENSMUST00000200873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039156 Stim2 ENSMUST00000201469 ENSMUSP00000143855 TRANSLATION protein_coding - - 5 754.0 6.0 8.895 1.0 181.9 1.0 -2,0 0.2362 12 17.562 MINOR ENSMUSG00000039156 Stim2 ENSMUST00000117661 ENSMUSP00000113174 TRANSLATION protein_coding - CCDS39089.2 1 746.0 6.0 8.73 1.1 189.2 1.0 -2,0 1.0 12 18.67 PRINCIPAL:1 ENSMUSG00000029403 Cdkl2 ENSMUST00000201357 ENSMUSP00000143967 TRANSLATION protein_coding start - 2 75.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029403 Cdkl2 ENSMUST00000136037 - NO_TRANSLATION retained_intron ENSMUSG00000029403 Cdkl2 ENSMUST00000086978 ENSMUSP00000084199 TRANSLATION protein_coding - CCDS19426.1 1 568.0 19.0 6.8 7.4 254.8 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000029403 Cdkl2 ENSMUST00000069937 ENSMUSP00000063617 TRANSLATION protein_coding - CCDS19425.1 1 564.0 19.0 6.8 0.0 254.8 0.0 -4,-5 0.2509 - 18.0 MINOR ENSMUSG00000029403 Cdkl2 ENSMUST00000201895 - NO_TRANSLATION TEC ENSMUSG00000029403 Cdkl2 ENSMUST00000113143 ENSMUSP00000108768 TRANSLATION protein_coding - CCDS19425.1 1 564.0 19.0 6.8 0.0 254.8 0.0 -4,-5 0.2509 - 18.0 MINOR ENSMUSG00000029403 Cdkl2 ENSMUST00000113140 ENSMUSP00000108765 TRANSLATION protein_coding - CCDS19426.1 5 568.0 19.0 6.8 7.4 254.8 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000041313 Slc7a1 ENSMUST00000201860 - NO_TRANSLATION retained_intron ENSMUSG00000041313 Slc7a1 ENSMUST00000138596 ENSMUSP00000122914 TRANSLATION protein_coding stop - 3 94.0 0.0 0.5 0.0 0.0 4.0 -4,-2 0.0023 1 -2.0 MINOR ENSMUSG00000041313 Slc7a1 ENSMUST00000201348 - NO_TRANSLATION retained_intron ENSMUSG00000041313 Slc7a1 ENSMUST00000202457 ENSMUSP00000144000 TRANSLATION protein_coding stop - 5 142.0 0.0 2.01 0.0 51.0 4.0 -4,-5 0.0021 1 -2.0 MINOR ENSMUSG00000041313 Slc7a1 ENSMUST00000138257 ENSMUSP00000117781 TRANSLATION protein_coding stop - 5 542.0 0.0 6.21 0.0 139.0 15.0 -4,-2 0.0073 4 -2.0 MINOR ENSMUSG00000041313 Slc7a1 ENSMUST00000048116 ENSMUSP00000046714 TRANSLATION protein_coding - CCDS19882.1 1 622.0 0.0 8.258 12.0 228.9 17.0 -4,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000033209 Ttc28 ENSMUST00000156290 ENSMUSP00000137609 TRANSLATION protein_coding - CCDS59682.1 5 2450.0 0.0 3.44 0.1 647.3 0.0 -4,-2 0.9943 40 8.0 PRINCIPAL:3 ENSMUSG00000033209 Ttc28 ENSMUST00000143505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033209 Ttc28 ENSMUST00000129017 - NO_TRANSLATION retained_intron ENSMUSG00000033209 Ttc28 ENSMUST00000125470 - NO_TRANSLATION retained_intron ENSMUSG00000033209 Ttc28 ENSMUST00000128584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033209 Ttc28 ENSMUST00000040111 ENSMUSP00000136116 TRANSLATION protein_coding - - 5 2481.0 0.0 3.44 0.0 647.3 0.0 -4,-2 1.0 39 8.0 ALTERNATIVE:2 ENSMUSG00000079362 Gm43302 ENSMUST00000050011 ENSMUSP00000062528 TRANSLATION protein_coding,RT - - 1 611.0 16.0 9.6 0.0 768.3 0.0 -4,-5 0.8563 - -2.0 PRINCIPAL:1 ENSMUSG00000055991 Zkscan5 ENSMUST00000162168 ENSMUSP00000124171 TRANSLATION nonsense_mediated_decay start - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055991 Zkscan5 ENSMUST00000161881 ENSMUSP00000124544 TRANSLATION protein_coding start/stop - 3 148.0 0.0 0.0 0.0 31.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055991 Zkscan5 ENSMUST00000160162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055991 Zkscan5 ENSMUST00000161896 ENSMUSP00000124838 TRANSLATION nonsense_mediated_decay - - 3 219.0 0.0 0.8 0.0 137.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055991 Zkscan5 ENSMUST00000031601 ENSMUSP00000031601 TRANSLATION protein_coding - CCDS51697.1 1 746.0 48.0 2.4 0.0 352.7 0.0 -4,-5 0.3639 - 15.996 MINOR ENSMUSG00000055991 Zkscan5 ENSMUST00000085671 ENSMUSP00000082814 TRANSLATION protein_coding - CCDS39386.1 1 819.0 48.0 2.4 0.1 386.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000049265 Kcnk3 ENSMUST00000197428 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049265 Kcnk3 ENSMUST00000066295 ENSMUSP00000098987 TRANSLATION protein_coding - CCDS19160.1 1 409.0 0.0 2.0 1.5 136.5 0.0 -2,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000029155 Spata18 ENSMUST00000041422 ENSMUSP00000040922 TRANSLATION non_stop_decay stop - 1 487.0 0.0 0.0 0.0 214.4 0.0 -4,-5 0.074 8 -2.0 MINOR ENSMUSG00000029155 Spata18 ENSMUST00000178631 ENSMUSP00000137444 TRANSLATION protein_coding start - 1 435.0 0.0 0.0 0.0 214.4 0.0 -4,-5 0.065 6 -2.0 MINOR ENSMUSG00000029155 Spata18 ENSMUST00000071077 ENSMUSP00000064308 TRANSLATION protein_coding - CCDS57351.1 5 537.0 0.0 0.0 0.0 214.4 0.0 -4,-5 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000070464 Ccl26 ENSMUST00000094226 ENSMUSP00000091779 TRANSLATION protein_coding - CCDS19741.1 1 93.0 0.0 2.24 0.1 56.2 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000012520 Phox2b ENSMUST00000012664 ENSMUSP00000012664 TRANSLATION protein_coding - CCDS19316.1 1 314.0 0.0 1.2 7.3 80.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000012520 Phox2b ENSMUST00000174251 ENSMUSP00000134216 TRANSLATION protein_coding - - 1 192.0 0.0 1.0 0.0 50.6 0.0 -4,-5 0.0 - 8.778 MINOR ENSMUSG00000035898 Uba6 ENSMUST00000147734 - NO_TRANSLATION retained_intron ENSMUSG00000035898 Uba6 ENSMUST00000039373 ENSMUSP00000035328 TRANSLATION protein_coding - CCDS19378.1 1 1053.0 19.0 17.85 7.9 779.6 0.0 -4,-5 0.8703 35 19.54 MINOR ENSMUSG00000035898 Uba6 ENSMUST00000113373 ENSMUSP00000109000 TRANSLATION protein_coding - - 1 1022.0 19.0 17.85 18.9 779.6 0.0 -4,-5 1.0 35 22.0 PRINCIPAL:1 ENSMUSG00000092080 Vmn2r16 ENSMUST00000165180 ENSMUSP00000127838 TRANSLATION protein_coding - CCDS51602.1 5 850.0 4.0 2.29 0.1 379.1 7.0 0,-3 0.5861 - 12.0 ALTERNATIVE:2 ENSMUSG00000092080 Vmn2r16 ENSMUST00000232912 ENSMUSP00000156750 TRANSLATION protein_coding - - - 897.0 4.0 2.29 0.0 379.1 7.0 0,-3 0.7496 - 12.0 PRINCIPAL:4 ENSMUSG00000092080 Vmn2r16 ENSMUST00000240713 ENSMUSP00000159506 TRANSLATION protein_coding - - - 849.0 4.0 2.29 0.1 379.6 7.0 0,-3 0.291 - 12.0 ALTERNATIVE:2 ENSMUSG00000029320 1700016H13Rik ENSMUST00000120108 ENSMUSP00000113969 TRANSLATION protein_coding - CCDS51575.1 2 117.0 0.0 1.0 6.6 207.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029320 1700016H13Rik ENSMUST00000119824 ENSMUSP00000113935 TRANSLATION protein_coding - CCDS51575.1 5 117.0 0.0 1.0 6.6 207.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029320 1700016H13Rik ENSMUST00000120688 ENSMUSP00000113469 TRANSLATION protein_coding - CCDS51575.1 3 117.0 0.0 1.0 6.6 207.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029320 1700016H13Rik ENSMUST00000154408 ENSMUSP00000122224 TRANSLATION nonsense_mediated_decay - - 2 37.0 0.0 0.0 0.0 39.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029320 1700016H13Rik ENSMUST00000154096 ENSMUSP00000118111 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 0.0 0.0 39.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029320 1700016H13Rik ENSMUST00000134926 ENSMUSP00000114503 TRANSLATION protein_coding - CCDS51575.1 1 117.0 0.0 1.0 6.6 207.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029320 1700016H13Rik ENSMUST00000031261 ENSMUSP00000031261 TRANSLATION nonsense_mediated_decay - - 2 37.0 0.0 0.0 0.0 39.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029012 Orc5 ENSMUST00000199943 - NO_TRANSLATION retained_intron ENSMUSG00000029012 Orc5 ENSMUST00000030872 ENSMUSP00000030872 TRANSLATION protein_coding - CCDS19110.1 1 435.0 15.0 10.0 11.8 282.5 0.0 -4,-6 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000029012 Orc5 ENSMUST00000142987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029012 Orc5 ENSMUST00000138248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029012 Orc5 ENSMUST00000135906 - NO_TRANSLATION retained_intron ENSMUSG00000029012 Orc5 ENSMUST00000141263 ENSMUSP00000120214 TRANSLATION protein_coding stop - 5 312.0 12.0 7.316 0.0 164.8 0.0 -4,-7 0.0017 5 -2.0 MINOR ENSMUSG00000050017 Pitpnb ENSMUST00000086635 ENSMUSP00000083835 TRANSLATION protein_coding - CCDS39213.1 1 271.0 0.0 7.41 34.9 394.2 0.0 -4,-5 1.0 13 12.0 ALTERNATIVE:1 ENSMUSG00000050017 Pitpnb ENSMUST00000200298 ENSMUSP00000142732 TRANSLATION protein_coding - CCDS80368.1 1 272.0 0.0 7.41 34.9 394.2 0.0 -4,-5 0.9948 14 12.0 PRINCIPAL:3 ENSMUSG00000050017 Pitpnb ENSMUST00000196192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050017 Pitpnb ENSMUST00000198137 - NO_TRANSLATION retained_intron ENSMUSG00000029436 Mmp17 ENSMUST00000177802 - NO_TRANSLATION retained_intron ENSMUSG00000029436 Mmp17 ENSMUST00000031390 ENSMUSP00000031390 TRANSLATION protein_coding - CCDS19695.1 1 578.0 22.0 4.14 0.0 364.5 0.0 1,-3 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000029162 Khk ENSMUST00000201621 ENSMUSP00000144050 TRANSLATION protein_coding - CCDS39050.1 1 298.0 26.0 8.0 23.5 118.7 0.0 -4,-5 1.0 11 16.002 PRINCIPAL:1 ENSMUSG00000029162 Khk ENSMUST00000202752 ENSMUSP00000143850 TRANSLATION protein_coding stop - 5 243.0 11.0 6.5 0.0 58.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000029162 Khk ENSMUST00000201571 ENSMUSP00000144226 TRANSLATION protein_coding stop - 3 253.0 24.0 7.0 17.1 79.3 0.0 -4,-6 0.4134 8 -2.0 MINOR ENSMUSG00000029162 Khk ENSMUST00000200978 - NO_TRANSLATION retained_intron ENSMUSG00000029162 Khk ENSMUST00000031053 ENSMUSP00000031053 TRANSLATION protein_coding - CCDS80243.1 5 343.0 26.0 9.0 14.7 126.5 0.0 -4,-5 0.9328 11 14.436 MINOR ENSMUSG00000029193 Cckar ENSMUST00000031093 ENSMUSP00000031093 TRANSLATION protein_coding - CCDS19293.1 1 436.0 0.0 3.9 9.2 308.3 7.0 -4,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000029193 Cckar ENSMUST00000202946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029193 Cckar ENSMUST00000200691 ENSMUSP00000144103 TRANSLATION protein_coding - CCDS84881.1 1 365.0 0.0 2.1 1.8 201.2 6.0 1,-3 0.0712 6 2.694 MINOR ENSMUSG00000028777 Gnat3 ENSMUST00000030561 ENSMUSP00000030561 TRANSLATION protein_coding - CCDS39017.1 1 354.0 24.0 7.5 36.9 414.4 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000029366 Dck ENSMUST00000031311 ENSMUSP00000031311 TRANSLATION protein_coding - CCDS19405.1 1 260.0 15.0 6.13 0.0 258.0 0.0 -4,-7 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000029366 Dck ENSMUST00000196967 - NO_TRANSLATION retained_intron ENSMUSG00000106379 Lhfpl3 ENSMUST00000197992 ENSMUSP00000143576 TRANSLATION protein_coding - CCDS80218.1 1 228.0 0.0 2.33 13.8 232.9 3.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000106379 Lhfpl3 ENSMUST00000196406 ENSMUSP00000142837 TRANSLATION protein_coding - - 1 80.0 0.0 1.33 0.0 88.2 1.0 -4,-6 0.0015 1 3.426 MINOR ENSMUSG00000029491 Pde6b ENSMUST00000134865 - NO_TRANSLATION retained_intron ENSMUSG00000029491 Pde6b ENSMUST00000031456 ENSMUSP00000031456 TRANSLATION protein_coding - CCDS19510.1 1 856.0 15.0 18.5 15.5 355.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000029491 Pde6b ENSMUST00000130448 - NO_TRANSLATION retained_intron ENSMUSG00000015950 Ncf1 ENSMUST00000126934 - NO_TRANSLATION retained_intron ENSMUSG00000015950 Ncf1 ENSMUST00000182626 - NO_TRANSLATION retained_intron ENSMUSG00000015950 Ncf1 ENSMUST00000016094 ENSMUSP00000016094 TRANSLATION protein_coding - CCDS71674.1 1 404.0 0.0 9.55 0.0 309.2 0.0 -4,-6 0.1535 10 12.0 MINOR ENSMUSG00000015950 Ncf1 ENSMUST00000144086 ENSMUSP00000138547 TRANSLATION protein_coding - - 2 377.0 0.0 8.55 0.0 241.8 0.0 -4,-6 0.0217 10 5.958 MINOR ENSMUSG00000015950 Ncf1 ENSMUST00000146354 ENSMUSP00000138121 TRANSLATION nonsense_mediated_decay - CCDS39298.1 1 390.0 0.0 9.55 4.0 309.2 0.0 -4,-6 1.0 10 -2.0 MINOR ENSMUSG00000015950 Ncf1 ENSMUST00000139249 - NO_TRANSLATION retained_intron ENSMUSG00000015950 Ncf1 ENSMUST00000111275 ENSMUSP00000106906 TRANSLATION protein_coding - CCDS39298.1 1 390.0 0.0 9.55 4.0 309.2 0.0 -4,-6 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000012428 Steap4 ENSMUST00000115421 ENSMUSP00000111081 TRANSLATION protein_coding - CCDS39008.1 1 470.0 18.0 4.0 10.9 97.1 0.0 -4,-5 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000029263 Pigg ENSMUST00000031189 ENSMUSP00000031189 TRANSLATION protein_coding - CCDS39203.1 5 975.0 6.0 0.0 0.3 28.9 12.0 -3,-6 0.5744 11 6.0 ALTERNATIVE:2 ENSMUSG00000029263 Pigg ENSMUST00000119014 ENSMUSP00000113818 TRANSLATION protein_coding - CCDS80354.1 5 983.0 6.0 0.0 1.5 28.9 13.0 -3,-6 1.0 11 7.0 PRINCIPAL:2 ENSMUSG00000029263 Pigg ENSMUST00000118910 ENSMUSP00000112984 TRANSLATION protein_coding - - 5 850.0 4.0 0.0 0.0 0.0 13.0 -3,-6 0.0245 8 4.002 MINOR ENSMUSG00000034021 Pds5b ENSMUST00000201920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034021 Pds5b ENSMUST00000202170 ENSMUSP00000144572 TRANSLATION protein_coding - CCDS85012.1 5 1448.0 0.0 25.75 2.5 0.0 0.0 -4,-5 1.0 27 7.0 PRINCIPAL:4 ENSMUSG00000034021 Pds5b ENSMUST00000132947 - NO_TRANSLATION retained_intron ENSMUSG00000034021 Pds5b ENSMUST00000154083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034021 Pds5b ENSMUST00000038900 ENSMUSP00000038421 TRANSLATION protein_coding - - 5 1449.0 0.0 25.75 2.5 0.0 0.0 -4,-5 0.812 27 7.0 ALTERNATIVE:2 ENSMUSG00000034021 Pds5b ENSMUST00000110486 ENSMUSP00000106112 TRANSLATION protein_coding - - 1 701.0 0.0 13.2 0.0 0.0 0.0 -4,-5 0.0241 16 0.0 MINOR ENSMUSG00000034021 Pds5b ENSMUST00000133738 - NO_TRANSLATION retained_intron ENSMUSG00000034021 Pds5b ENSMUST00000016569 ENSMUSP00000016569 TRANSLATION protein_coding - CCDS39412.1 1 1446.0 0.0 25.75 0.3 0.0 0.0 -4,-5 0.6335 27 6.0 ALTERNATIVE:2 ENSMUSG00000039706 Ldb2 ENSMUST00000199261 ENSMUSP00000143289 TRANSLATION protein_coding - CCDS84878.1 5 371.0 0.0 6.35 28.2 193.1 0.0 -4,-7 0.9868 3 10.0 ALTERNATIVE:1 ENSMUSG00000039706 Ldb2 ENSMUST00000199471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039706 Ldb2 ENSMUST00000199256 ENSMUSP00000143775 TRANSLATION protein_coding - CCDS80278.1 1 329.0 0.0 5.35 15.8 193.1 0.0 -4,-7 0.7551 3 6.178 MINOR ENSMUSG00000039706 Ldb2 ENSMUST00000198356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039706 Ldb2 ENSMUST00000198894 - NO_TRANSLATION retained_intron ENSMUSG00000039706 Ldb2 ENSMUST00000199534 ENSMUSP00000142442 TRANSLATION protein_coding - CCDS80276.1 1 331.0 0.0 5.35 15.8 193.1 0.0 -4,-7 0.7543 3 6.178 MINOR ENSMUSG00000039706 Ldb2 ENSMUST00000070748 ENSMUSP00000067737 TRANSLATION protein_coding - CCDS19271.1 1 373.0 0.0 6.35 28.2 193.1 0.0 -4,-7 1.0 3 10.0 PRINCIPAL:4 ENSMUSG00000029185 Fam114a1 ENSMUST00000139366 ENSMUSP00000119284 TRANSLATION protein_coding stop - 5 176.0 0.0 0.0 0.0 46.1 0.0 -4,-5 0.0244 1 -2.0 MINOR ENSMUSG00000029185 Fam114a1 ENSMUST00000031080 ENSMUSP00000031080 TRANSLATION protein_coding - CCDS19304.1 1 569.0 0.0 -0.18 2.6 206.4 0.0 -4,-5 1.0 14 7.0 PRINCIPAL:1 ENSMUSG00000029705 Cux1 ENSMUST00000177305 - NO_TRANSLATION retained_intron ENSMUSG00000029705 Cux1 ENSMUST00000177297 ENSMUSP00000134819 TRANSLATION nonsense_mediated_decay - - 5 543.0 0.0 0.0 0.0 53.1 0.0 -4,-7 0.0038 21 -2.0 MINOR ENSMUSG00000029705 Cux1 ENSMUST00000004097 ENSMUSP00000004097 TRANSLATION protein_coding - CCDS39328.1 1 1426.0 0.0 3.4 0.1 309.5 0.0 -4,-7 0.6178 31 8.0 ALTERNATIVE:2 ENSMUSG00000029705 Cux1 ENSMUST00000175998 ENSMUSP00000135816 TRANSLATION protein_coding start - 5 472.0 0.0 0.0 0.0 198.7 1.0 -4,-5 0.0043 14 -2.0 MINOR ENSMUSG00000029705 Cux1 ENSMUST00000163906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029705 Cux1 ENSMUST00000176778 ENSMUSP00000135892 TRANSLATION protein_coding - - 5 1509.0 0.0 3.4 0.1 309.5 0.0 -4,-5 0.4277 32 8.0 ALTERNATIVE:2 ENSMUSG00000029705 Cux1 ENSMUST00000176172 ENSMUSP00000135086 TRANSLATION protein_coding - - 1 1517.0 0.0 3.4 0.0 309.5 0.0 -4,-5 0.7262 33 8.0 ALTERNATIVE:2 ENSMUSG00000029705 Cux1 ENSMUST00000175918 ENSMUSP00000135606 TRANSLATION nonsense_mediated_decay - - 5 199.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 12 -2.0 MINOR ENSMUSG00000029705 Cux1 ENSMUST00000176423 ENSMUSP00000135036 TRANSLATION protein_coding start/stop - 3 268.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0015 9 -2.0 MINOR ENSMUSG00000029705 Cux1 ENSMUST00000176745 ENSMUSP00000135512 TRANSLATION protein_coding - CCDS57391.1 1 676.0 0.0 0.0 13.0 198.7 1.0 -4,-7 0.9817 27 3.38 MINOR ENSMUSG00000029705 Cux1 ENSMUST00000176216 ENSMUSP00000135054 TRANSLATION protein_coding - CCDS71685.1 1 678.0 0.0 0.0 15.2 198.7 1.0 -4,-7 1.0 26 4.0 MINOR ENSMUSG00000029705 Cux1 ENSMUST00000176486 ENSMUSP00000135370 TRANSLATION protein_coding start - 1 1389.0 0.0 3.4 0.0 309.5 0.0 -4,-5 0.3036 27 -2.0 MINOR ENSMUSG00000029705 Cux1 ENSMUST00000175975 ENSMUSP00000135223 TRANSLATION protein_coding - CCDS71684.1 1 1504.0 0.0 3.4 0.4 309.5 0.0 -4,-7 0.7453 35 8.0 PRINCIPAL:3 ENSMUSG00000029705 Cux1 ENSMUST00000176501 - NO_TRANSLATION retained_intron ENSMUSG00000023348 Trip6 ENSMUST00000197816 - NO_TRANSLATION retained_intron ENSMUSG00000023348 Trip6 ENSMUST00000199121 ENSMUSP00000143687 TRANSLATION protein_coding - - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000023348 Trip6 ENSMUST00000024119 ENSMUSP00000024119 TRANSLATION protein_coding - CCDS19765.1 1 480.0 23.0 4.0 6.8 121.1 0.0 -4,-2 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000023348 Trip6 ENSMUST00000199564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094504 Foxl3 ENSMUST00000179205 ENSMUSP00000137099 TRANSLATION protein_coding - CCDS57394.1 5 216.0 0.0 1.4 0.4 119.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029564 4930519G04Rik ENSMUST00000112153 - NO_TRANSLATION retained_intron ENSMUSG00000029564 4930519G04Rik ENSMUST00000031547 ENSMUSP00000031547 TRANSLATION protein_coding - CCDS19574.1 1 205.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2482 - 0.0 ALTERNATIVE:2 ENSMUSG00000029564 4930519G04Rik ENSMUST00000134389 ENSMUSP00000144618 TRANSLATION protein_coding - - 1 194.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5739 - 0.0 PRINCIPAL:2 ENSMUSG00000029564 4930519G04Rik ENSMUST00000142582 ENSMUSP00000116852 TRANSLATION protein_coding start - 3 202.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0978 - -2.0 MINOR ENSMUSG00000089798 1700028K03Rik ENSMUST00000159902 ENSMUSP00000124574 TRANSLATION protein_coding - - 5 175.0 0.0 4.2 3.4 280.6 0.0 -4,-5 0.6954 - 8.091 ALTERNATIVE:2 ENSMUSG00000089798 1700028K03Rik ENSMUST00000238787 ENSMUSP00000158924 TRANSLATION protein_coding - CCDS51586.1 - 177.0 0.0 4.2 3.4 280.6 0.0 -4,-6 0.8455 - 8.091 ALTERNATIVE:2 ENSMUSG00000089798 1700028K03Rik ENSMUST00000239050 ENSMUSP00000159004 TRANSLATION protein_coding - CCDS19504.1 - 186.0 0.0 4.6 3.7 280.6 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000089798 1700028K03Rik ENSMUST00000163064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089798 1700028K03Rik ENSMUST00000058921 ENSMUSP00000058373 TRANSLATION protein_coding - - 2 184.0 0.0 4.6 3.7 280.6 0.0 -4,-5 0.9034 - 9.0 ALTERNATIVE:2 ENSMUSG00000089798 1700028K03Rik ENSMUST00000162591 - NO_TRANSLATION retained_intron ENSMUSG00000046798 Cldn12 ENSMUST00000060947 ENSMUSP00000061928 TRANSLATION protein_coding - CCDS19074.1 1 244.0 0.0 0.1 22.7 0.0 4.0 -2,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000046798 Cldn12 ENSMUST00000134931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046798 Cldn12 ENSMUST00000134157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046798 Cldn12 ENSMUST00000198303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046798 Cldn12 ENSMUST00000115446 ENSMUSP00000111106 TRANSLATION protein_coding - CCDS19074.1 1 244.0 0.0 0.1 22.7 0.0 4.0 -2,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000046798 Cldn12 ENSMUST00000179804 ENSMUSP00000136988 TRANSLATION protein_coding - CCDS19074.1 3 244.0 0.0 0.1 22.7 0.0 4.0 -2,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000046798 Cldn12 ENSMUST00000115445 ENSMUSP00000111105 TRANSLATION protein_coding - CCDS19074.1 1 244.0 0.0 0.1 22.7 0.0 4.0 -2,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000046798 Cldn12 ENSMUST00000125110 ENSMUSP00000122400 TRANSLATION protein_coding stop - 3 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0214 - -2.0 MINOR ENSMUSG00000038803 Ost4 ENSMUST00000132034 ENSMUSP00000126221 TRANSLATION protein_coding - CCDS39049.1 1 37.0 0.0 1.0 35.8 63.8 1.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038803 Ost4 ENSMUST00000132253 ENSMUSP00000128352 TRANSLATION protein_coding - CCDS39049.1 1 37.0 0.0 1.0 35.8 63.8 1.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000089984 Fbxo24 ENSMUST00000111002 ENSMUSP00000106630 TRANSLATION protein_coding - - 5 450.0 0.0 1.996 0.0 31.1 0.0 -4,-7 0.0015 - 7.74 MINOR ENSMUSG00000089984 Fbxo24 ENSMUST00000136028 ENSMUSP00000121077 TRANSLATION nonsense_mediated_decay - - 5 92.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000089984 Fbxo24 ENSMUST00000031732 ENSMUSP00000031732 TRANSLATION protein_coding - CCDS51674.1 1 589.0 0.0 2.396 0.0 68.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029674 Limk1 ENSMUST00000132027 - NO_TRANSLATION retained_intron ENSMUSG00000029674 Limk1 ENSMUST00000138590 ENSMUSP00000118268 TRANSLATION protein_coding start/stop - 5 107.0 2.0 1.58 0.0 45.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029674 Limk1 ENSMUST00000111233 ENSMUSP00000106864 TRANSLATION protein_coding - CCDS84969.1 1 639.0 27.0 9.63 0.0 287.6 0.0 -4,-2 0.1821 14 14.688 MINOR ENSMUSG00000029674 Limk1 ENSMUST00000134093 ENSMUSP00000121718 TRANSLATION nonsense_mediated_decay start - 2 452.0 24.0 6.13 0.0 159.5 0.0 -4,-7 0.0003 7 -2.0 MINOR ENSMUSG00000029674 Limk1 ENSMUST00000137897 - NO_TRANSLATION retained_intron ENSMUSG00000029674 Limk1 ENSMUST00000015137 ENSMUSP00000015137 TRANSLATION protein_coding - CCDS19724.1 1 647.0 26.0 9.63 6.4 342.8 0.0 -4,-5 1.0 14 19.334 PRINCIPAL:1 ENSMUSG00000055923 Aasdh ENSMUST00000136080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055923 Aasdh ENSMUST00000149602 ENSMUSP00000117489 TRANSLATION protein_coding start/stop - 3 212.0 0.0 1.88 0.0 54.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055923 Aasdh ENSMUST00000154548 - NO_TRANSLATION retained_intron ENSMUSG00000055923 Aasdh ENSMUST00000123682 ENSMUSP00000121050 TRANSLATION nonsense_mediated_decay - - 5 233.0 6.0 2.2 0.0 70.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055923 Aasdh ENSMUST00000142450 ENSMUSP00000121556 TRANSLATION protein_coding stop - 2 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0106 - -2.0 MINOR ENSMUSG00000055923 Aasdh ENSMUST00000123059 - NO_TRANSLATION retained_intron ENSMUSG00000055923 Aasdh ENSMUST00000201283 - NO_TRANSLATION retained_intron ENSMUSG00000055923 Aasdh ENSMUST00000120963 ENSMUSP00000113792 TRANSLATION protein_coding - CCDS19366.1 1 1100.0 26.0 7.93 1.1 268.7 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000055923 Aasdh ENSMUST00000135697 - NO_TRANSLATION retained_intron ENSMUSG00000055923 Aasdh ENSMUST00000069709 ENSMUSP00000069279 TRANSLATION protein_coding - CCDS19366.1 5 1100.0 26.0 7.93 1.1 268.7 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000055923 Aasdh ENSMUST00000134805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055923 Aasdh ENSMUST00000146570 ENSMUSP00000117639 TRANSLATION protein_coding stop - 1 645.0 26.0 5.25 0.0 196.3 0.0 -4,-5 0.0065 4 -2.0 MINOR ENSMUSG00000055923 Aasdh ENSMUST00000135954 ENSMUSP00000120586 TRANSLATION protein_coding stop - 3 47.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055923 Aasdh ENSMUST00000145022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055923 Aasdh ENSMUST00000126741 ENSMUSP00000118854 TRANSLATION nonsense_mediated_decay - - 1 404.0 19.0 3.8 0.0 153.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034826 Nup54 ENSMUST00000135112 ENSMUSP00000117237 TRANSLATION protein_coding stop - 2 122.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034826 Nup54 ENSMUST00000123694 - NO_TRANSLATION retained_intron ENSMUSG00000034826 Nup54 ENSMUST00000038514 ENSMUSP00000046540 TRANSLATION protein_coding - CCDS19430.1 1 510.0 4.0 8.3 8.0 156.0 0.0 -4,-7 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000034826 Nup54 ENSMUST00000146470 ENSMUSP00000121171 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034826 Nup54 ENSMUST00000142525 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034826 Nup54 ENSMUST00000122893 - NO_TRANSLATION retained_intron ENSMUSG00000034826 Nup54 ENSMUST00000201228 - NO_TRANSLATION retained_intron ENSMUSG00000034826 Nup54 ENSMUST00000130156 ENSMUSP00000120937 TRANSLATION protein_coding start/stop - 3 132.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000004952 Rasa4 ENSMUST00000152723 - NO_TRANSLATION retained_intron ENSMUSG00000004952 Rasa4 ENSMUST00000199502 - NO_TRANSLATION retained_intron ENSMUSG00000004952 Rasa4 ENSMUST00000122887 ENSMUSP00000118929 TRANSLATION protein_coding start - 2 178.0 3.0 0.8 0.0 72.8 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000004952 Rasa4 ENSMUST00000125048 - NO_TRANSLATION retained_intron ENSMUSG00000004952 Rasa4 ENSMUST00000125247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004952 Rasa4 ENSMUST00000145294 ENSMUSP00000120203 TRANSLATION nonsense_mediated_decay start - 5 141.0 7.0 1.73 0.0 59.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000004952 Rasa4 ENSMUST00000134509 - NO_TRANSLATION retained_intron ENSMUSG00000004952 Rasa4 ENSMUST00000140972 - NO_TRANSLATION retained_intron ENSMUSG00000004952 Rasa4 ENSMUST00000130598 - NO_TRANSLATION retained_intron ENSMUSG00000004952 Rasa4 ENSMUST00000131353 - NO_TRANSLATION retained_intron ENSMUSG00000004952 Rasa4 ENSMUST00000100570 ENSMUSP00000098136 TRANSLATION protein_coding - CCDS39325.1 1 756.0 22.0 8.038 0.0 325.7 0.0 -4,-7 0.0525 16 13.278 MINOR ENSMUSG00000004952 Rasa4 ENSMUST00000042135 ENSMUSP00000037869 TRANSLATION protein_coding - CCDS39324.1 1 802.0 22.0 8.838 4.6 377.7 0.0 -4,-7 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000004952 Rasa4 ENSMUST00000135344 - NO_TRANSLATION retained_intron ENSMUSG00000039765 Cc2d2a ENSMUST00000142303 - NO_TRANSLATION retained_intron ENSMUSG00000039765 Cc2d2a ENSMUST00000125866 ENSMUSP00000114349 TRANSLATION protein_coding stop - 5 1457.0 0.0 0.0 0.0 224.6 0.0 -4,-5 0.2679 6 -2.0 MINOR ENSMUSG00000039765 Cc2d2a ENSMUST00000127355 - NO_TRANSLATION retained_intron ENSMUSG00000039765 Cc2d2a ENSMUST00000048150 ENSMUSP00000048320 TRANSLATION protein_coding - CCDS39080.1 1 1633.0 0.0 0.0 1.4 224.6 0.0 -4,-5 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000025747 Tyms ENSMUST00000154751 - NO_TRANSLATION retained_intron ENSMUSG00000025747 Tyms ENSMUST00000198095 ENSMUSP00000143001 TRANSLATION protein_coding stop - 3 139.0 3.0 3.58 0.0 79.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000025747 Tyms ENSMUST00000141630 ENSMUSP00000123377 TRANSLATION nonsense_mediated_decay - - 1 140.0 2.0 1.75 0.0 78.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025747 Tyms ENSMUST00000026846 ENSMUSP00000026846 TRANSLATION protein_coding - CCDS19154.1 1 307.0 12.0 7.91 9.3 394.3 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000025747 Tyms ENSMUST00000146520 ENSMUSP00000143540 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000025747 Tyms ENSMUST00000196872 ENSMUSP00000142970 TRANSLATION protein_coding stop - 1 175.0 11.0 4.16 0.0 215.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025747 Tyms ENSMUST00000138520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025747 Tyms ENSMUST00000196095 ENSMUSP00000143552 TRANSLATION nonsense_mediated_decay - - 5 93.0 2.0 1.816 0.0 81.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025747 Tyms ENSMUST00000134298 - NO_TRANSLATION retained_intron ENSMUSG00000029178 Klf3 ENSMUST00000200384 ENSMUSP00000142668 TRANSLATION nonsense_mediated_decay start - 1 55.0 0.0 0.04 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029178 Klf3 ENSMUST00000197879 ENSMUSP00000142369 TRANSLATION protein_coding stop - 2 142.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029178 Klf3 ENSMUST00000196764 - NO_TRANSLATION retained_intron ENSMUSG00000029178 Klf3 ENSMUST00000200677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029178 Klf3 ENSMUST00000200587 - NO_TRANSLATION retained_intron ENSMUSG00000029178 Klf3 ENSMUST00000165536 ENSMUSP00000129363 TRANSLATION protein_coding - CCDS19301.1 1 344.0 12.0 2.54 16.5 74.5 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000029178 Klf3 ENSMUST00000197869 - NO_TRANSLATION retained_intron ENSMUSG00000029178 Klf3 ENSMUST00000198946 ENSMUSP00000142651 TRANSLATION protein_coding start - 3 138.0 12.0 2.3 0.0 74.5 0.0 -4,-5 0.0075 - -2.0 MINOR ENSMUSG00000043059 Zfp513 ENSMUST00000114590 ENSMUSP00000110238 TRANSLATION protein_coding - CCDS19178.2 1 541.0 34.0 3.069 10.3 87.8 0.0 -4,-6 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000043059 Zfp513 ENSMUST00000201968 ENSMUSP00000144517 TRANSLATION protein_coding start - 1 92.0 2.0 0.57 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043059 Zfp513 ENSMUST00000201119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043059 Zfp513 ENSMUST00000201231 ENSMUSP00000144172 TRANSLATION protein_coding stop - 5 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043059 Zfp513 ENSMUST00000200992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043059 Zfp513 ENSMUST00000031562 ENSMUSP00000031562 TRANSLATION protein_coding - CCDS51458.1 1 539.0 34.0 3.069 0.0 87.8 0.0 -4,-5 0.3568 3 18.0 MINOR ENSMUSG00000043059 Zfp513 ENSMUST00000202929 ENSMUSP00000143817 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043059 Zfp513 ENSMUST00000201078 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001166 Oas1c ENSMUST00000130045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001166 Oas1c ENSMUST00000117193 ENSMUSP00000112584 TRANSLATION protein_coding - CCDS19626.1 1 362.0 3.0 5.65 0.4 247.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000001166 Oas1c ENSMUST00000125547 ENSMUSP00000118441 TRANSLATION protein_coding stop - 5 39.0 3.0 1.25 0.0 50.2 0.0 -4,-2 0.0015 - -2.0 MINOR ENSMUSG00000036639 Nudt1 ENSMUST00000145898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036639 Nudt1 ENSMUST00000110825 ENSMUSP00000106449 TRANSLATION protein_coding - - 2 151.0 9.0 2.2 0.0 45.0 0.0 -2,0 0.0129 1 14.418 MINOR ENSMUSG00000036639 Nudt1 ENSMUST00000071881 ENSMUSP00000071778 TRANSLATION protein_coding - CCDS19818.1 1 156.0 9.0 3.5 32.9 53.8 0.0 -2,0 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000036639 Nudt1 ENSMUST00000198660 ENSMUSP00000143140 TRANSLATION protein_coding stop - 5 112.0 9.0 2.5 0.0 51.3 0.0 -2,0 0.0001 1 -2.0 MINOR ENSMUSG00000036639 Nudt1 ENSMUST00000050205 ENSMUSP00000059983 TRANSLATION protein_coding - CCDS19818.1 1 156.0 9.0 3.5 32.9 53.8 0.0 -2,0 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000036639 Nudt1 ENSMUST00000110826 ENSMUSP00000106450 TRANSLATION protein_coding - CCDS19818.1 1 156.0 9.0 3.5 32.9 53.8 0.0 -2,0 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000036639 Nudt1 ENSMUST00000110827 ENSMUSP00000106451 TRANSLATION protein_coding - CCDS19818.1 5 156.0 9.0 3.5 32.9 53.8 0.0 -2,0 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000070419 Cyp3a57 ENSMUST00000079268 ENSMUSP00000078251 TRANSLATION protein_coding - CCDS39388.1 5 503.0 30.0 11.5 9.4 430.5 1.0 -2,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000070419 Cyp3a57 ENSMUST00000174696 ENSMUSP00000133600 TRANSLATION nonsense_mediated_decay - - 5 149.0 5.0 3.95 0.0 71.3 1.0 -2,-5 0.0015 - -2.0 MINOR ENSMUSG00000040003 Magi2 ENSMUST00000199384 - NO_TRANSLATION retained_intron ENSMUSG00000040003 Magi2 ENSMUST00000200443 ENSMUSP00000142581 TRANSLATION protein_coding stop - 5 38.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040003 Magi2 ENSMUST00000208219 ENSMUSP00000146458 TRANSLATION protein_coding - - 5 837.0 0.0 8.0 0.0 261.4 0.0 -4,-6 0.0069 19 0.8 MINOR ENSMUSG00000040003 Magi2 ENSMUST00000197443 ENSMUSP00000142764 TRANSLATION protein_coding - - 5 1400.0 0.0 14.6 0.3 437.8 0.0 -4,-7 0.178 26 7.598 ALTERNATIVE:2 ENSMUSG00000040003 Magi2 ENSMUST00000197553 ENSMUSP00000146769 TRANSLATION protein_coding - - 1 853.0 0.0 8.2 0.0 266.4 0.0 -4,-6 0.0079 20 0.8 MINOR ENSMUSG00000040003 Magi2 ENSMUST00000197354 ENSMUSP00000142576 TRANSLATION protein_coding - - 5 1414.0 0.0 14.8 0.3 438.5 0.0 -4,-7 0.2975 27 8.0 ALTERNATIVE:2 ENSMUSG00000040003 Magi2 ENSMUST00000197307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040003 Magi2 ENSMUST00000197822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040003 Magi2 ENSMUST00000088516 ENSMUSP00000085872 TRANSLATION protein_coding - CCDS51424.1 5 1275.0 0.0 14.8 0.4 438.5 0.0 -4,-7 1.0 28 8.0 PRINCIPAL:2 ENSMUSG00000040003 Magi2 ENSMUST00000199514 ENSMUSP00000143578 TRANSLATION protein_coding start - 5 188.0 0.0 2.264 0.0 60.5 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000040003 Magi2 ENSMUST00000198908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040003 Magi2 ENSMUST00000200518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040003 Magi2 ENSMUST00000101558 ENSMUSP00000099094 TRANSLATION protein_coding - CCDS51425.1 1 1098.0 0.0 11.85 0.7 397.5 0.0 -4,-5 0.1065 24 2.102 MINOR ENSMUSG00000040003 Magi2 ENSMUST00000115267 ENSMUSP00000110922 TRANSLATION protein_coding - CCDS39019.1 1 1112.0 0.0 12.05 0.7 398.2 0.0 -4,-5 0.177 25 2.498 MINOR ENSMUSG00000040003 Magi2 ENSMUST00000207284 ENSMUSP00000146348 TRANSLATION protein_coding start/stop - 5 238.0 0.0 2.7 0.0 80.3 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000038656 Cyp3a16 ENSMUST00000031633 ENSMUSP00000031633 TRANSLATION protein_coding - CCDS19862.1 1 504.0 30.0 11.55 10.1 436.6 0.0 0,-4 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000032690 Oas2 ENSMUST00000053909 ENSMUSP00000060082 TRANSLATION protein_coding - CCDS19625.2 1 742.0 10.0 5.72 0.0 565.8 0.0 -4,-7 0.5044 7 13.976 ALTERNATIVE:2 ENSMUSG00000032690 Oas2 ENSMUST00000147941 - NO_TRANSLATION retained_intron ENSMUSG00000032690 Oas2 ENSMUST00000146101 ENSMUSP00000122053 TRANSLATION protein_coding start - 1 236.0 5.0 4.0 0.0 287.9 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000032690 Oas2 ENSMUST00000081491 ENSMUSP00000080209 TRANSLATION protein_coding - CCDS84949.1 1 751.0 10.0 5.732 0.0 569.8 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:2 ENSMUSG00000079363 Gbp4 ENSMUST00000100962 ENSMUSP00000098522 TRANSLATION protein_coding - CCDS57368.1 1 631.0 13.0 11.698 0.0 695.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000079363 Gbp4 ENSMUST00000196677 ENSMUSP00000142795 TRANSLATION protein_coding stop - 2 149.0 4.0 4.25 0.0 169.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079363 Gbp4 ENSMUST00000198278 - NO_TRANSLATION retained_intron ENSMUSG00000079363 Gbp4 ENSMUST00000196204 ENSMUSP00000142528 TRANSLATION nonsense_mediated_decay - - 1 103.0 9.0 1.0 0.0 50.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000079363 Gbp4 ENSMUST00000199629 ENSMUSP00000143689 TRANSLATION protein_coding stop - 2 127.0 4.0 3.5 0.0 148.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079363 Gbp4 ENSMUST00000197799 ENSMUSP00000142493 TRANSLATION protein_coding stop - 3 184.0 9.0 4.248 0.0 182.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049606 Zfp644 ENSMUST00000127572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049606 Zfp644 ENSMUST00000156851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049606 Zfp644 ENSMUST00000127932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049606 Zfp644 ENSMUST00000200481 - NO_TRANSLATION retained_intron ENSMUSG00000049606 Zfp644 ENSMUST00000112695 ENSMUSP00000108315 TRANSLATION protein_coding - - 5 105.0 3.0 0.0 7.6 0.0 0.0 -4,-6 0.614 2 2.0 MINOR ENSMUSG00000049606 Zfp644 ENSMUST00000155495 ENSMUSP00000116876 TRANSLATION protein_coding stop - 2 122.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049606 Zfp644 ENSMUST00000124263 ENSMUSP00000119893 TRANSLATION protein_coding stop - 5 132.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000049606 Zfp644 ENSMUST00000125895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049606 Zfp644 ENSMUST00000135108 ENSMUSP00000122012 TRANSLATION protein_coding stop - 3 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000049606 Zfp644 ENSMUST00000112694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049606 Zfp644 ENSMUST00000122980 ENSMUSP00000118856 TRANSLATION protein_coding stop - 3 203.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000049606 Zfp644 ENSMUST00000137285 ENSMUSP00000114698 TRANSLATION protein_coding stop - 1 287.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0026 3 -2.0 MINOR ENSMUSG00000049606 Zfp644 ENSMUST00000045466 ENSMUSP00000038047 TRANSLATION protein_coding - CCDS39196.1 1 1292.0 30.0 0.24 0.8 21.0 0.0 -4,-6 0.6273 12 18.0 MINOR ENSMUSG00000049606 Zfp644 ENSMUST00000112696 ENSMUSP00000108316 TRANSLATION protein_coding - - 5 1323.0 30.0 0.24 6.7 21.0 0.0 -4,-6 1.0 13 19.728 PRINCIPAL:1 ENSMUSG00000049606 Zfp644 ENSMUST00000142391 - NO_TRANSLATION retained_intron ENSMUSG00000049606 Zfp644 ENSMUST00000148192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049606 Zfp644 ENSMUST00000127434 ENSMUSP00000122421 TRANSLATION protein_coding stop - 1 624.0 19.0 0.16 0.0 21.0 0.0 -4,-6 0.055 5 -2.0 MINOR ENSMUSG00000049606 Zfp644 ENSMUST00000112698 ENSMUSP00000108318 TRANSLATION protein_coding - CCDS39196.1 5 1292.0 30.0 0.24 0.8 21.0 0.0 -4,-6 0.6273 12 18.0 MINOR ENSMUSG00000029196 Tada2b ENSMUST00000119916 ENSMUSP00000114124 TRANSLATION protein_coding - - 5 345.0 2.0 0.25 1.0 0.0 0.0 -4,-5 0.0088 4 4.23 MINOR ENSMUSG00000029196 Tada2b ENSMUST00000031097 ENSMUSP00000031097 TRANSLATION protein_coding - CCDS51478.1 2 420.0 8.0 0.55 17.7 40.2 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000029586 Spdye4b ENSMUST00000197330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029586 Spdye4b ENSMUST00000031574 ENSMUSP00000031574 TRANSLATION protein_coding - CCDS51688.1 1 236.0 0.0 3.45 0.0 200.4 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029586 Spdye4b ENSMUST00000198090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029586 Spdye4b ENSMUST00000159781 ENSMUSP00000125524 TRANSLATION protein_coding - CCDS51688.1 1 236.0 0.0 3.45 0.0 200.4 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000001739 Cldn15 ENSMUST00000111093 ENSMUSP00000106722 TRANSLATION protein_coding - CCDS19758.1 5 227.0 0.0 3.35 10.3 116.6 3.0 1,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000001739 Cldn15 ENSMUST00000001790 ENSMUSP00000001790 TRANSLATION protein_coding - CCDS19758.1 1 227.0 0.0 3.35 10.3 116.6 3.0 1,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000001739 Cldn15 ENSMUST00000128391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039000 Ube3c ENSMUST00000197953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039000 Ube3c ENSMUST00000197193 - NO_TRANSLATION retained_intron ENSMUSG00000039000 Ube3c ENSMUST00000049453 ENSMUSP00000045998 TRANSLATION protein_coding - CCDS39042.1 1 1083.0 0.0 5.11 22.1 311.5 0.0 -4,-7 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000039000 Ube3c ENSMUST00000199032 ENSMUSP00000142474 TRANSLATION protein_coding - - 1 644.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0039 12 0.0 MINOR ENSMUSG00000039000 Ube3c ENSMUST00000199598 - NO_TRANSLATION retained_intron ENSMUSG00000005057 Sh2b2 ENSMUST00000196397 ENSMUSP00000142398 TRANSLATION protein_coding - CCDS39327.1 1 621.0 0.0 5.6 0.4 155.7 0.0 -4,-7 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000005057 Sh2b2 ENSMUST00000005188 ENSMUSP00000005188 TRANSLATION protein_coding - CCDS39327.1 1 621.0 0.0 5.6 0.4 155.7 0.0 -4,-7 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000005057 Sh2b2 ENSMUST00000197324 - NO_TRANSLATION retained_intron ENSMUSG00000005057 Sh2b2 ENSMUST00000196245 ENSMUSP00000142515 TRANSLATION protein_coding stop - 3 44.0 0.0 1.0 0.0 42.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005057 Sh2b2 ENSMUST00000196447 ENSMUSP00000142728 TRANSLATION protein_coding - CCDS80431.1 1 420.0 0.0 3.6 0.0 113.3 0.0 -4,-7 0.0163 4 5.454 MINOR ENSMUSG00000063015 Ccni ENSMUST00000123033 - NO_TRANSLATION retained_intron ENSMUSG00000063015 Ccni ENSMUST00000144514 ENSMUSP00000122434 TRANSLATION protein_coding stop - 5 81.0 0.0 1.229 0.0 37.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000063015 Ccni ENSMUST00000201823 ENSMUSP00000143972 TRANSLATION protein_coding start/stop - 3 148.0 0.0 2.2 0.0 79.2 0.0 -4,-6 0.0006 - -2.0 MINOR ENSMUSG00000063015 Ccni ENSMUST00000151568 ENSMUSP00000116224 TRANSLATION protein_coding stop - 5 172.0 0.0 3.029 0.0 89.7 0.0 -4,-2 0.0072 - -2.0 MINOR ENSMUSG00000063015 Ccni ENSMUST00000058550 ENSMUSP00000050189 TRANSLATION protein_coding - CCDS19436.1 1 377.0 0.0 4.429 16.7 86.9 0.0 -4,-2 1.0 - 15.814 PRINCIPAL:1 ENSMUSG00000035297 Cops4 ENSMUST00000123559 - NO_TRANSLATION retained_intron ENSMUSG00000035297 Cops4 ENSMUST00000123069 ENSMUSP00000115767 TRANSLATION nonsense_mediated_decay - - 3 36.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000035297 Cops4 ENSMUST00000045993 ENSMUSP00000048416 TRANSLATION protein_coding - CCDS19463.1 1 406.0 0.0 10.25 34.2 64.5 0.0 -4,-6 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000035297 Cops4 ENSMUST00000123492 ENSMUSP00000119737 TRANSLATION nonsense_mediated_decay start - 5 253.0 0.0 6.0 0.0 29.9 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000035297 Cops4 ENSMUST00000146476 ENSMUSP00000121979 TRANSLATION protein_coding stop - 3 206.0 0.0 5.0 0.0 0.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000035297 Cops4 ENSMUST00000151414 ENSMUSP00000114585 TRANSLATION protein_coding stop - 3 244.0 0.0 6.0 0.0 0.0 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000035297 Cops4 ENSMUST00000147729 - NO_TRANSLATION retained_intron ENSMUSG00000057425 Ugt2b37 ENSMUST00000075858 ENSMUSP00000075255 TRANSLATION protein_coding - CCDS19386.1 1 530.0 16.0 6.0 10.3 842.5 0.0 1,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000029406 Pitpnm2 ENSMUST00000162812 ENSMUSP00000124740 TRANSLATION protein_coding - CCDS19674.1 1 1281.0 7.0 4.0 3.4 552.6 0.0 -4,-5 0.7625 25 15.334 ALTERNATIVE:2 ENSMUSG00000029406 Pitpnm2 ENSMUST00000086123 ENSMUSP00000083292 TRANSLATION protein_coding - CCDS19674.1 1 1281.0 7.0 4.0 3.4 552.6 0.0 -4,-5 0.7625 25 15.334 ALTERNATIVE:2 ENSMUSG00000029406 Pitpnm2 ENSMUST00000159628 - NO_TRANSLATION retained_intron ENSMUSG00000029406 Pitpnm2 ENSMUST00000161530 - NO_TRANSLATION retained_intron ENSMUSG00000029406 Pitpnm2 ENSMUST00000161938 ENSMUSP00000124111 TRANSLATION protein_coding - CCDS71669.1 1 1335.0 7.0 4.0 3.9 559.4 0.0 -4,-5 1.0 26 15.612 ALTERNATIVE:2 ENSMUSG00000029406 Pitpnm2 ENSMUST00000161479 - NO_TRANSLATION retained_intron ENSMUSG00000029406 Pitpnm2 ENSMUST00000159677 ENSMUSP00000143269 TRANSLATION protein_coding - - 5 436.0 0.0 4.0 2.1 378.9 0.0 -4,-5 0.2556 8 8.612 MINOR ENSMUSG00000029406 Pitpnm2 ENSMUST00000159010 - NO_TRANSLATION retained_intron ENSMUSG00000029406 Pitpnm2 ENSMUST00000161644 ENSMUSP00000125073 TRANSLATION protein_coding stop - 5 40.0 0.0 1.0 0.0 61.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029406 Pitpnm2 ENSMUST00000161273 ENSMUSP00000124292 TRANSLATION protein_coding - - 5 1331.0 7.0 4.0 4.6 549.7 0.0 -4,-5 0.7576 27 16.0 PRINCIPAL:3 ENSMUSG00000028932 Psmc2 ENSMUST00000030769 ENSMUSP00000030769 TRANSLATION protein_coding - - 1 433.0 12.0 9.5 35.1 136.6 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000028932 Psmc2 ENSMUST00000132720 - NO_TRANSLATION retained_intron ENSMUSG00000028932 Psmc2 ENSMUST00000239497 ENSMUSP00000159299 TRANSLATION protein_coding - CCDS19108.1 - 475.0 12.0 9.5 0.0 136.6 0.0 -4,-5 0.0745 23 18.0 MINOR ENSMUSG00000046709 Mapk10 ENSMUST00000128869 ENSMUSP00000143448 TRANSLATION protein_coding - - 1 178.0 12.0 3.75 0.0 138.0 0.0 -4,-7 0.0 - 2.664 MINOR ENSMUSG00000046709 Mapk10 ENSMUST00000086854 ENSMUSP00000084065 TRANSLATION protein_coding - CCDS80350.1 1 464.0 17.0 8.7 34.0 217.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:4 ENSMUSG00000046709 Mapk10 ENSMUST00000112847 ENSMUSP00000108468 TRANSLATION protein_coding - CCDS39185.1 1 464.0 17.0 8.7 34.0 216.1 0.0 -4,-5 0.9913 7 16.0 ALTERNATIVE:1 ENSMUSG00000046709 Mapk10 ENSMUST00000135134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046709 Mapk10 ENSMUST00000152609 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046709 Mapk10 ENSMUST00000238446 ENSMUSP00000158744 TRANSLATION protein_coding - - - 478.0 17.0 8.7 7.2 216.1 0.0 -4,-5 0.3219 - -2.0 MINOR ENSMUSG00000046709 Mapk10 ENSMUST00000170792 ENSMUSP00000127193 TRANSLATION protein_coding - CCDS39185.1 1 464.0 17.0 8.7 34.0 216.1 0.0 -4,-5 0.9913 7 16.0 ALTERNATIVE:1 ENSMUSG00000046709 Mapk10 ENSMUST00000141573 ENSMUSP00000142798 TRANSLATION nonsense_mediated_decay - - 5 173.0 7.0 2.0 0.0 31.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000046709 Mapk10 ENSMUST00000136595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046709 Mapk10 ENSMUST00000133069 ENSMUSP00000143609 TRANSLATION protein_coding - - 2 252.0 17.0 4.75 0.0 152.6 0.0 -4,-5 0.0 4 6.0 MINOR ENSMUSG00000046709 Mapk10 ENSMUST00000142444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046709 Mapk10 ENSMUST00000112848 ENSMUSP00000108469 TRANSLATION protein_coding - - 1 494.0 17.0 8.7 0.0 216.1 0.0 -4,-5 0.0284 7 12.0 MINOR ENSMUSG00000046709 Mapk10 ENSMUST00000112846 ENSMUSP00000108467 TRANSLATION protein_coding - - 1 418.0 17.0 8.7 22.8 216.1 0.0 -4,-5 0.7088 7 14.644 MINOR ENSMUSG00000029108 Pcdh7 ENSMUST00000191837 ENSMUSP00000142319 TRANSLATION protein_coding - CCDS51505.1 1 1255.0 66.0 1.34 7.1 666.7 1.0 3,-2 1.0 18 16.0 ALTERNATIVE:1 ENSMUSG00000029108 Pcdh7 ENSMUST00000195156 ENSMUSP00000141378 TRANSLATION nonsense_mediated_decay start - 5 379.0 12.0 0.5 0.0 391.6 1.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029108 Pcdh7 ENSMUST00000199310 ENSMUSP00000143387 TRANSLATION protein_coding - - 2 171.0 0.0 0.0 0.0 135.2 0.0 -4,-2 0.0 1 0.0 MINOR ENSMUSG00000029108 Pcdh7 ENSMUST00000068110 ENSMUSP00000066306 TRANSLATION protein_coding - CCDS19296.1 1 1069.0 66.0 1.34 4.9 666.7 1.0 3,-2 0.7707 15 15.278 ALTERNATIVE:1 ENSMUSG00000029108 Pcdh7 ENSMUST00000192287 ENSMUSP00000142276 TRANSLATION protein_coding start - 1 802.0 45.0 1.14 0.0 578.2 1.0 -4,-7 0.0233 9 -2.0 MINOR ENSMUSG00000029108 Pcdh7 ENSMUST00000094783 ENSMUSP00000092376 TRANSLATION protein_coding - CCDS80286.1 1 1247.0 66.0 1.34 6.0 666.7 1.0 3,-2 0.9223 19 15.64 PRINCIPAL:3 ENSMUSG00000029108 Pcdh7 ENSMUST00000192048 ENSMUSP00000141505 TRANSLATION protein_coding start - 3 125.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029433 Diablo ENSMUST00000145152 ENSMUSP00000143617 TRANSLATION protein_coding - - 1 157.0 0.0 2.33 0.0 198.6 0.0 -4,0 0.0 2 0.0 MINOR ENSMUSG00000029433 Diablo ENSMUST00000111587 ENSMUSP00000107214 TRANSLATION protein_coding - CCDS39270.1 1 237.0 0.0 5.41 8.2 342.0 0.0 -4,0 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000029433 Diablo ENSMUST00000125047 - NO_TRANSLATION retained_intron ENSMUSG00000029433 Diablo ENSMUST00000111586 ENSMUSP00000107213 TRANSLATION protein_coding - - 5 174.0 0.0 3.41 0.0 255.8 0.0 -4,0 0.0 2 2.826 MINOR ENSMUSG00000029433 Diablo ENSMUST00000031385 ENSMUSP00000031385 TRANSLATION protein_coding - - 2 174.0 0.0 3.41 0.0 259.5 0.0 -4,0 0.0 2 3.048 MINOR ENSMUSG00000029433 Diablo ENSMUST00000139398 ENSMUSP00000143485 TRANSLATION nonsense_mediated_decay - - 1 157.0 0.0 2.33 0.0 198.6 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000029433 Diablo ENSMUST00000200247 ENSMUSP00000143673 TRANSLATION protein_coding - - 5 116.0 0.0 2.66 0.0 192.9 0.0 -4,-6 0.0 2 0.498 MINOR ENSMUSG00000029433 Diablo ENSMUST00000149334 - NO_TRANSLATION retained_intron ENSMUSG00000029433 Diablo ENSMUST00000125652 ENSMUSP00000115045 TRANSLATION nonsense_mediated_decay - CCDS39270.1 1 237.0 0.0 5.41 8.2 342.0 0.0 -4,0 1.0 3 -2.0 MINOR ENSMUSG00000062110 Scfd2 ENSMUST00000072857 ENSMUSP00000072636 TRANSLATION protein_coding - CCDS51519.1 1 684.0 0.0 0.0 17.7 41.1 0.0 -3,-5 1.0 18 10.0 PRINCIPAL:1 ENSMUSG00000062110 Scfd2 ENSMUST00000075848 ENSMUSP00000075245 TRANSLATION nonsense_mediated_decay - CCDS19345.1 1 477.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0287 10 -2.0 MINOR ENSMUSG00000062110 Scfd2 ENSMUST00000202465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062110 Scfd2 ENSMUST00000148994 ENSMUSP00000144640 TRANSLATION protein_coding start - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000062110 Scfd2 ENSMUST00000123203 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062110 Scfd2 ENSMUST00000113542 ENSMUSP00000109170 TRANSLATION protein_coding - CCDS71603.1 1 644.0 0.0 0.0 3.5 0.0 0.0 -3,-5 0.1569 17 0.6 MINOR ENSMUSG00000062110 Scfd2 ENSMUST00000142216 - NO_TRANSLATION retained_intron ENSMUSG00000062110 Scfd2 ENSMUST00000146015 - NO_TRANSLATION retained_intron ENSMUSG00000062110 Scfd2 ENSMUST00000151474 ENSMUSP00000121098 TRANSLATION protein_coding - CCDS19345.1 1 477.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0287 10 0.0 MINOR ENSMUSG00000049686 Orai1 ENSMUST00000121652 ENSMUSP00000113097 TRANSLATION protein_coding - CCDS39261.1 1 304.0 0.0 0.5 2.9 236.7 0.0 -4,-6 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000049686 Orai1 ENSMUST00000152213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061578 Ksr2 ENSMUST00000180430 ENSMUSP00000137670 TRANSLATION protein_coding - - 5 951.0 17.0 10.1 0.0 298.5 0.0 -4,-5 0.3026 14 18.0 MINOR ENSMUSG00000061578 Ksr2 ENSMUST00000240758 ENSMUSP00000159519 TRANSLATION protein_coding - - - 949.0 17.0 10.1 9.4 298.5 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000061578 Ksr2 ENSMUST00000073347 - NO_TRANSLATION retained_intron ENSMUSG00000035456 Prdm8 ENSMUST00000112959 ENSMUSP00000108583 TRANSLATION protein_coding - CCDS39178.1 1 688.0 7.0 0.666 0.4 19.7 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000035456 Prdm8 ENSMUST00000210477 ENSMUSP00000147333 TRANSLATION protein_coding - CCDS39178.1 5 688.0 7.0 0.666 0.4 19.7 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000037344 Slc12a9 ENSMUST00000156646 ENSMUSP00000117757 TRANSLATION protein_coding stop - 5 60.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037344 Slc12a9 ENSMUST00000149847 - NO_TRANSLATION retained_intron ENSMUSG00000037344 Slc12a9 ENSMUST00000141517 - NO_TRANSLATION retained_intron ENSMUSG00000037344 Slc12a9 ENSMUST00000039991 ENSMUSP00000038106 TRANSLATION protein_coding - CCDS19766.1 1 914.0 0.0 6.239 6.9 416.4 10.0 -4,-7 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000008843 Cldn13 ENSMUST00000008987 ENSMUSP00000008987 TRANSLATION protein_coding - CCDS39314.1 1 211.0 0.0 0.6 0.0 70.6 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000044827 Tlr1 ENSMUST00000197886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044827 Tlr1 ENSMUST00000059349 ENSMUSP00000060793 TRANSLATION protein_coding - CCDS19302.1 1 795.0 0.0 0.8 3.3 156.1 1.0 -2,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000044827 Tlr1 ENSMUST00000197315 ENSMUSP00000142500 TRANSLATION protein_coding - CCDS19302.1 1 795.0 0.0 0.8 3.3 156.1 1.0 -2,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000121580 ENSMUSG00000121580 ENSMUST00000249253 ENSMUSP00000159633 TRANSLATION protein_coding - - - 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000044674 Fzd1 ENSMUST00000054294 ENSMUSP00000058629 TRANSLATION protein_coding - CCDS19072.1 - 642.0 0.0 0.2 8.0 592.4 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000029617 Ccz1 ENSMUST00000200669 - NO_TRANSLATION retained_intron ENSMUSG00000029617 Ccz1 ENSMUST00000197555 - NO_TRANSLATION retained_intron ENSMUSG00000029617 Ccz1 ENSMUST00000031621 ENSMUSP00000031621 TRANSLATION protein_coding - CCDS19846.1 1 480.0 0.0 1.12 4.4 316.0 0.0 -4,-6 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000029617 Ccz1 ENSMUST00000199922 - NO_TRANSLATION retained_intron ENSMUSG00000029617 Ccz1 ENSMUST00000200619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029434 Vps33a ENSMUST00000198900 - NO_TRANSLATION retained_intron ENSMUSG00000029434 Vps33a ENSMUST00000031388 ENSMUSP00000031388 TRANSLATION protein_coding - CCDS19666.1 1 598.0 0.0 10.83 15.5 403.3 0.0 -4,-1 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000029434 Vps33a ENSMUST00000197467 ENSMUSP00000142813 TRANSLATION nonsense_mediated_decay start - 5 111.0 0.0 2.75 0.0 35.8 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029434 Vps33a ENSMUST00000200325 - NO_TRANSLATION retained_intron ENSMUSG00000067219 Nipal1 ENSMUST00000087212 ENSMUSP00000084462 TRANSLATION protein_coding - CCDS39111.1 1 416.0 0.0 5.05 4.5 442.5 9.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000067219 Nipal1 ENSMUST00000197772 - NO_TRANSLATION retained_intron ENSMUSG00000067219 Nipal1 ENSMUST00000197837 ENSMUSP00000143667 TRANSLATION protein_coding stop - 5 130.0 0.0 3.08 0.0 193.7 3.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000029385 Ccng2 ENSMUST00000121127 ENSMUSP00000113278 TRANSLATION protein_coding - CCDS19437.1 1 344.0 0.0 5.55 12.5 62.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029385 Ccng2 ENSMUST00000153260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029385 Ccng2 ENSMUST00000152097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029385 Ccng2 ENSMUST00000031331 ENSMUSP00000031331 TRANSLATION protein_coding - CCDS19437.1 1 344.0 0.0 5.55 12.5 62.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029385 Ccng2 ENSMUST00000130183 - NO_TRANSLATION retained_intron ENSMUSG00000029385 Ccng2 ENSMUST00000149329 - NO_TRANSLATION retained_intron ENSMUSG00000004948 Zp3 ENSMUST00000005073 ENSMUSP00000005073 TRANSLATION protein_coding - CCDS19749.1 1 424.0 0.0 5.15 3.2 148.7 0.0 3,-1 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000004948 Zp3 ENSMUST00000131563 ENSMUSP00000120447 TRANSLATION nonsense_mediated_decay start - 5 136.0 0.0 2.0 0.0 51.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000051246 Msantd1 ENSMUST00000202205 ENSMUSP00000144008 TRANSLATION protein_coding - CCDS80265.1 2 186.0 0.0 0.4 2.1 36.5 0.0 -2,0 0.2834 1 11.36 MINOR ENSMUSG00000051246 Msantd1 ENSMUST00000212362 ENSMUSP00000148522 TRANSLATION protein_coding - - 5 265.0 0.0 0.4 5.8 44.7 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000051246 Msantd1 ENSMUST00000050535 ENSMUSP00000057362 TRANSLATION protein_coding - CCDS19221.1 1 278.0 0.0 0.4 0.0 44.7 0.0 -2,0 0.2882 1 12.0 MINOR ENSMUSG00000051246 Msantd1 ENSMUST00000201636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038690 Atp5mf ENSMUST00000200584 - NO_TRANSLATION retained_intron ENSMUSG00000038690 Atp5mf ENSMUST00000161741 ENSMUSP00000125504 TRANSLATION protein_coding - CCDS39385.1 1 88.0 0.0 2.41 11.8 68.4 1.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000038690 Atp5mf ENSMUST00000037056 ENSMUSP00000039726 TRANSLATION protein_coding - - 5 76.0 0.0 2.08 0.0 63.2 1.0 -4,-5 0.0478 2 10.722 MINOR ENSMUSG00000038690 Atp5mf ENSMUST00000162360 ENSMUSP00000138039 TRANSLATION nonsense_mediated_decay - - 2 85.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0167 - -2.0 MINOR ENSMUSG00000038690 Atp5mf ENSMUST00000161845 ENSMUSP00000123904 TRANSLATION protein_coding start - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0131 - -2.0 MINOR ENSMUSG00000046658 Zfp316 ENSMUST00000051665 ENSMUSP00000059418 TRANSLATION protein_coding - CCDS19838.2 1 1017.0 59.0 0.32 0.1 357.9 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000046658 Zfp316 ENSMUST00000161448 ENSMUSP00000125416 TRANSLATION protein_coding - CCDS19838.2 1 1017.0 59.0 0.32 0.1 357.9 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000046658 Zfp316 ENSMUST00000197349 - NO_TRANSLATION retained_intron ENSMUSG00000067367 Lyar ENSMUST00000154975 ENSMUSP00000118337 TRANSLATION nonsense_mediated_decay - - 2 40.0 7.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000067367 Lyar ENSMUST00000114106 ENSMUSP00000109741 TRANSLATION protein_coding - CCDS19253.1 5 388.0 9.0 4.08 0.4 57.3 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000067367 Lyar ENSMUST00000202506 ENSMUSP00000144609 TRANSLATION protein_coding stop - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000067367 Lyar ENSMUST00000087514 ENSMUSP00000084791 TRANSLATION protein_coding - CCDS19253.1 1 388.0 9.0 4.08 0.4 57.3 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000067367 Lyar ENSMUST00000152066 ENSMUSP00000118035 TRANSLATION protein_coding stop - 3 49.0 7.0 1.33 0.0 34.4 0.0 -4,-5 0.0036 1 -2.0 MINOR ENSMUSG00000067367 Lyar ENSMUST00000123207 ENSMUSP00000121204 TRANSLATION protein_coding stop - 3 99.0 9.0 2.33 0.0 57.3 0.0 -4,-5 0.0082 1 -2.0 MINOR ENSMUSG00000067367 Lyar ENSMUST00000131492 - NO_TRANSLATION retained_intron ENSMUSG00000067367 Lyar ENSMUST00000130721 ENSMUSP00000122153 TRANSLATION protein_coding stop - 5 190.0 9.0 2.33 0.0 57.3 0.0 -4,-5 0.007 2 -2.0 MINOR ENSMUSG00000067367 Lyar ENSMUST00000132190 ENSMUSP00000121320 TRANSLATION protein_coding stop - 1 191.0 9.0 2.33 0.0 57.3 0.0 -4,-5 0.007 2 -2.0 MINOR ENSMUSG00000067367 Lyar ENSMUST00000155300 ENSMUSP00000122486 TRANSLATION protein_coding stop - 5 131.0 9.0 2.33 0.0 57.3 0.0 -4,-5 0.0072 2 -2.0 MINOR ENSMUSG00000067367 Lyar ENSMUST00000146401 ENSMUSP00000114506 TRANSLATION nonsense_mediated_decay - - 2 40.0 7.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007415 Gatad1 ENSMUST00000196304 ENSMUSP00000142480 TRANSLATION protein_coding - - 3 54.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0041 - 1.428 MINOR ENSMUSG00000007415 Gatad1 ENSMUST00000119783 ENSMUSP00000113271 TRANSLATION protein_coding - - 1 218.0 4.0 0.95 0.0 0.0 0.0 -4,-6 0.0156 3 7.39 MINOR ENSMUSG00000007415 Gatad1 ENSMUST00000140871 ENSMUSP00000122092 TRANSLATION protein_coding start - 2 49.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0123 - -2.0 MINOR ENSMUSG00000007415 Gatad1 ENSMUST00000007559 ENSMUSP00000007559 TRANSLATION protein_coding - CCDS19066.1 1 266.0 4.0 1.68 4.4 0.0 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000067365 Tmem128 ENSMUST00000201661 - NO_TRANSLATION retained_intron ENSMUSG00000067365 Tmem128 ENSMUST00000142277 ENSMUSP00000117712 TRANSLATION protein_coding start - 3 68.0 0.0 0.0 0.0 0.0 1.0 -4,-6 0.0118 - -2.0 MINOR ENSMUSG00000067365 Tmem128 ENSMUST00000128025 - NO_TRANSLATION retained_intron ENSMUSG00000067365 Tmem128 ENSMUST00000087511 ENSMUSP00000084788 TRANSLATION protein_coding - CCDS19254.1 1 163.0 0.0 1.75 12.5 0.0 4.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000067365 Tmem128 ENSMUST00000119047 ENSMUSP00000113758 TRANSLATION protein_coding - CCDS19254.1 1 163.0 0.0 1.75 12.5 0.0 4.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000035811 Ugt2b35 ENSMUST00000031186 ENSMUSP00000031186 TRANSLATION protein_coding - CCDS39128.1 5 529.0 16.0 6.0 8.8 835.0 0.0 1,-2 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000061601 Pclo ENSMUST00000030691 ENSMUSP00000030691 TRANSLATION protein_coding - CCDS51415.1 5 5068.0 8.0 9.308 0.0 354.5 0.0 -4,-5 1.0 119 18.0 PRINCIPAL:1 ENSMUSG00000061601 Pclo ENSMUST00000182407 ENSMUSP00000138419 TRANSLATION protein_coding - CCDS59667.1 5 4863.0 8.0 8.13 0.0 309.5 0.0 -4,-5 0.229 115 12.942 MINOR ENSMUSG00000061601 Pclo ENSMUST00000182426 - NO_TRANSLATION retained_intron ENSMUSG00000061601 Pclo ENSMUST00000182915 ENSMUSP00000138607 TRANSLATION protein_coding start - 1 1592.0 8.0 8.13 0.0 113.5 0.0 -4,-5 0.0301 40 -2.0 MINOR ENSMUSG00000048439 Nupl2 ENSMUST00000049887 ENSMUSP00000062766 TRANSLATION protein_coding - CCDS19115.1 1 420.0 4.0 0.0 2.0 0.0 0.0 -4,-7 1.0 7 5.0 PRINCIPAL:1 ENSMUSG00000048439 Nupl2 ENSMUST00000147392 - NO_TRANSLATION retained_intron ENSMUSG00000048439 Nupl2 ENSMUST00000115101 ENSMUSP00000110753 TRANSLATION nonsense_mediated_decay - - 2 161.0 4.0 0.0 1.0 0.0 0.0 -4,-7 0.1699 3 -2.0 MINOR ENSMUSG00000048439 Nupl2 ENSMUST00000124150 - NO_TRANSLATION retained_intron ENSMUSG00000118665 Lin54 ENSMUST00000239513 ENSMUSP00000159392 TRANSLATION protein_coding - CCDS19462.2 - 749.0 18.0 2.05 9.4 89.0 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000118665 Lin54 ENSMUST00000239512 ENSMUSP00000159391 TRANSLATION protein_coding - CCDS19462.2 - 749.0 18.0 2.05 9.4 89.0 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000118665 Lin54 ENSMUST00000239514 ENSMUSP00000159393 TRANSLATION nonsense_mediated_decay - - - 98.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000118665 Lin54 ENSMUST00000239515 - NO_TRANSLATION retained_intron ENSMUSG00000001847 Rac1 ENSMUST00000131513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001847 Rac1 ENSMUST00000080537 ENSMUSP00000079380 TRANSLATION protein_coding - CCDS19843.1 1 192.0 24.0 5.0 36.9 186.4 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000001847 Rac1 ENSMUST00000100489 ENSMUSP00000098058 TRANSLATION protein_coding - CCDS84993.1 1 211.0 24.0 4.5 16.0 171.3 0.0 -4,-6 0.4835 3 17.764 MINOR ENSMUSG00000001847 Rac1 ENSMUST00000145709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000104824 Gm21663 ENSMUST00000196214 ENSMUSP00000142577 TRANSLATION protein_coding - - 5 267.0 0.0 2.05 0.0 83.4 0.0 -4,-2 0.7703 - 12.0 PRINCIPAL:1 ENSMUSG00000029630 Cyp3a25 ENSMUST00000068317 ENSMUSP00000065585 TRANSLATION protein_coding - CCDS19866.1 1 503.0 30.0 11.7 12.4 425.9 2.0 -2,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000029630 Cyp3a25 ENSMUST00000145062 ENSMUSP00000123615 TRANSLATION nonsense_mediated_decay - - 1 149.0 5.0 3.95 0.0 68.6 2.0 -2,-5 0.0015 1 -2.0 MINOR ENSMUSG00000029630 Cyp3a25 ENSMUST00000138870 ENSMUSP00000116077 TRANSLATION protein_coding - - 3 137.0 0.0 3.95 0.0 43.2 2.0 -2,-5 0.0 1 0.0 MINOR ENSMUSG00000029630 Cyp3a25 ENSMUST00000153808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035780 Ugt2a3 ENSMUST00000031195 ENSMUSP00000031195 TRANSLATION protein_coding - CCDS19387.1 1 534.0 16.0 6.0 5.4 770.2 0.0 3,-2 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000070420 Zscan25 ENSMUST00000200246 ENSMUSP00000142367 TRANSLATION protein_coding stop - 3 179.0 0.0 0.8 0.0 134.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000070420 Zscan25 ENSMUST00000199563 ENSMUSP00000143449 TRANSLATION nonsense_mediated_decay - - 1 161.0 0.0 0.8 0.0 134.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000070420 Zscan25 ENSMUST00000094116 ENSMUSP00000091664 TRANSLATION protein_coding - CCDS39387.1 1 543.0 27.0 1.8 8.0 287.6 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000004815 Dgkq ENSMUST00000139598 - NO_TRANSLATION retained_intron ENSMUSG00000004815 Dgkq ENSMUST00000145917 - NO_TRANSLATION retained_intron ENSMUSG00000004815 Dgkq ENSMUST00000153238 ENSMUSP00000118065 TRANSLATION nonsense_mediated_decay - - 5 257.0 10.0 0.982 0.0 38.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000004815 Dgkq ENSMUST00000132708 ENSMUSP00000122837 TRANSLATION nonsense_mediated_decay - - 5 169.0 4.0 0.582 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000004815 Dgkq ENSMUST00000156964 - NO_TRANSLATION retained_intron ENSMUSG00000004815 Dgkq ENSMUST00000139169 - NO_TRANSLATION retained_intron ENSMUSG00000004815 Dgkq ENSMUST00000053913 ENSMUSP00000057859 TRANSLATION protein_coding - CCDS19515.1 1 934.0 21.0 2.38 0.4 376.8 0.0 -4,-7 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000004815 Dgkq ENSMUST00000123669 - NO_TRANSLATION retained_intron ENSMUSG00000004815 Dgkq ENSMUST00000132179 ENSMUSP00000118466 TRANSLATION nonsense_mediated_decay - - 5 257.0 10.0 0.982 0.0 38.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000004815 Dgkq ENSMUST00000153365 - NO_TRANSLATION retained_intron ENSMUSG00000004815 Dgkq ENSMUST00000144624 - NO_TRANSLATION retained_intron ENSMUSG00000037890 Wdr19 ENSMUST00000204647 - NO_TRANSLATION retained_intron ENSMUSG00000037890 Wdr19 ENSMUST00000203653 ENSMUSP00000144866 TRANSLATION protein_coding - CCDS51509.1 1 1341.0 7.0 1.65 24.1 99.2 0.0 -4,-7 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000037890 Wdr19 ENSMUST00000041892 ENSMUSP00000038098 TRANSLATION protein_coding - CCDS51509.1 1 1341.0 7.0 1.65 24.1 99.2 0.0 -4,-7 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000037890 Wdr19 ENSMUST00000204582 - NO_TRANSLATION retained_intron ENSMUSG00000037890 Wdr19 ENSMUST00000203359 - NO_TRANSLATION retained_intron ENSMUSG00000037890 Wdr19 ENSMUST00000203676 - NO_TRANSLATION retained_intron ENSMUSG00000037890 Wdr19 ENSMUST00000204375 - NO_TRANSLATION retained_intron ENSMUSG00000037890 Wdr19 ENSMUST00000203554 ENSMUSP00000144826 TRANSLATION protein_coding start - 5 105.0 7.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 3 -2.0 MINOR ENSMUSG00000070702 Csn1s1 ENSMUST00000200567 - NO_TRANSLATION retained_intron ENSMUSG00000070702 Csn1s1 ENSMUST00000197911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070702 Csn1s1 ENSMUST00000197794 - NO_TRANSLATION retained_intron ENSMUSG00000070702 Csn1s1 ENSMUST00000199506 ENSMUSP00000143694 TRANSLATION protein_coding stop - 3 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070702 Csn1s1 ENSMUST00000197631 ENSMUSP00000142794 TRANSLATION protein_coding - CCDS80314.1 1 294.0 0.0 0.0 0.0 40.9 0.0 3,-4 0.0784 - 3.234 MINOR ENSMUSG00000070702 Csn1s1 ENSMUST00000094641 ENSMUSP00000092225 TRANSLATION protein_coding - CCDS51534.1 1 313.0 0.0 0.0 0.0 75.9 0.0 3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070702 Csn1s1 ENSMUST00000198293 - NO_TRANSLATION retained_intron ENSMUSG00000070702 Csn1s1 ENSMUST00000198432 - NO_TRANSLATION retained_intron ENSMUSG00000070702 Csn1s1 ENSMUST00000196500 - NO_TRANSLATION retained_intron ENSMUSG00000070702 Csn1s1 ENSMUST00000197157 ENSMUSP00000142839 TRANSLATION nonsense_mediated_decay start - 3 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070702 Csn1s1 ENSMUST00000197788 - NO_TRANSLATION retained_intron ENSMUSG00000070702 Csn1s1 ENSMUST00000196380 - NO_TRANSLATION retained_intron ENSMUSG00000070702 Csn1s1 ENSMUST00000199533 - NO_TRANSLATION retained_intron ENSMUSG00000070702 Csn1s1 ENSMUST00000200344 - NO_TRANSLATION retained_intron ENSMUSG00000056076 Eif3b ENSMUST00000100507 ENSMUSP00000098076 TRANSLATION protein_coding - CCDS19819.1 1 803.0 0.0 14.73 0.4 253.9 0.0 -4,-5 1.0 34 12.0 PRINCIPAL:1 ENSMUSG00000056076 Eif3b ENSMUST00000197632 - NO_TRANSLATION retained_intron ENSMUSG00000056076 Eif3b ENSMUST00000199377 ENSMUSP00000143425 TRANSLATION protein_coding start - 3 175.0 0.0 4.15 0.0 70.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000104752 Gm5565 ENSMUST00000199463 ENSMUSP00000143497 TRANSLATION protein_coding - - 5 317.0 0.0 2.5 0.0 29.4 0.0 -4,0 0.7558 - 12.0 PRINCIPAL:1 ENSMUSG00000029462 Vps29 ENSMUST00000145821 ENSMUSP00000123593 TRANSLATION protein_coding stop - 3 124.0 5.0 3.292 0.0 0.0 0.0 -3,-6 0.0038 5 -2.0 MINOR ENSMUSG00000029462 Vps29 ENSMUST00000155671 ENSMUSP00000121020 TRANSLATION protein_coding - CCDS39256.1 1 182.0 6.0 5.16 36.2 0.0 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:3 ENSMUSG00000029462 Vps29 ENSMUST00000199086 - NO_TRANSLATION retained_intron ENSMUSG00000029462 Vps29 ENSMUST00000117868 ENSMUSP00000113345 TRANSLATION protein_coding - - 2 144.0 6.0 3.91 2.0 0.0 0.0 -4,-6 0.0839 8 9.61 MINOR ENSMUSG00000029462 Vps29 ENSMUST00000154686 ENSMUSP00000118991 TRANSLATION nonsense_mediated_decay - - 5 37.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0149 - -2.0 MINOR ENSMUSG00000029462 Vps29 ENSMUST00000118830 ENSMUSP00000113525 TRANSLATION protein_coding - CCDS84954.1 1 186.0 6.0 5.16 36.2 0.0 0.0 -3,-1 0.9646 7 16.0 ALTERNATIVE:1 ENSMUSG00000029462 Vps29 ENSMUST00000118765 ENSMUSP00000112579 TRANSLATION protein_coding - - 3 91.0 3.0 2.16 1.0 0.0 0.0 -4,-6 0.0557 4 3.0 MINOR ENSMUSG00000029462 Vps29 ENSMUST00000111729 ENSMUSP00000107358 TRANSLATION nonsense_mediated_decay - - 2 53.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0221 - -2.0 MINOR ENSMUSG00000029462 Vps29 ENSMUST00000132785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015944 Castor2 ENSMUST00000201013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015944 Castor2 ENSMUST00000016088 ENSMUSP00000016088 TRANSLATION protein_coding - CCDS19717.1 1 329.0 0.0 7.014 30.2 133.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000015944 Castor2 ENSMUST00000140240 - NO_TRANSLATION retained_intron ENSMUSG00000005672 Kit ENSMUST00000202167 - NO_TRANSLATION retained_intron ENSMUSG00000005672 Kit ENSMUST00000143221 - NO_TRANSLATION retained_intron ENSMUSG00000005672 Kit ENSMUST00000144270 ENSMUSP00000116465 TRANSLATION protein_coding - CCDS80302.1 1 975.0 20.0 16.68 8.2 390.6 2.0 3,-2 0.956 16 17.0 ALTERNATIVE:1 ENSMUSG00000005672 Kit ENSMUST00000136002 - NO_TRANSLATION retained_intron ENSMUSG00000005672 Kit ENSMUST00000005815 ENSMUSP00000005815 TRANSLATION protein_coding - CCDS51525.1 1 979.0 20.0 16.68 8.2 390.6 2.0 3,-2 1.0 16 17.0 PRINCIPAL:4 ENSMUSG00000005672 Kit ENSMUST00000201240 - NO_TRANSLATION retained_intron ENSMUSG00000005672 Kit ENSMUST00000148993 - NO_TRANSLATION retained_intron ENSMUSG00000005672 Kit ENSMUST00000151357 - NO_TRANSLATION retained_intron ENSMUSG00000040557 Mettl27 ENSMUST00000111221 ENSMUSP00000106852 TRANSLATION protein_coding - CCDS84970.1 1 207.0 17.0 4.099 0.7 36.6 0.0 -4,-5 0.0213 5 9.09 MINOR ENSMUSG00000040557 Mettl27 ENSMUST00000047196 ENSMUSP00000039080 TRANSLATION protein_coding - CCDS19727.1 1 238.0 24.0 5.099 2.7 58.5 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000040557 Mettl27 ENSMUST00000136815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040557 Mettl27 ENSMUST00000148286 ENSMUSP00000119109 TRANSLATION protein_coding start - 2 76.0 4.0 1.099 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040557 Mettl27 ENSMUST00000201847 ENSMUSP00000144170 TRANSLATION protein_coding stop - 3 219.0 24.0 5.0 0.0 58.5 0.0 -4,-5 0.0259 5 -2.0 MINOR ENSMUSG00000040557 Mettl27 ENSMUST00000068617 ENSMUSP00000067814 TRANSLATION protein_coding - CCDS84970.1 1 207.0 17.0 4.099 0.7 36.6 0.0 -4,-5 0.0213 5 9.09 MINOR ENSMUSG00000040557 Mettl27 ENSMUST00000111219 ENSMUSP00000106850 TRANSLATION protein_coding - CCDS19727.1 1 238.0 24.0 5.099 2.7 58.5 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000040557 Mettl27 ENSMUST00000136246 ENSMUSP00000119451 TRANSLATION protein_coding stop - 3 129.0 13.0 3.0 0.0 36.5 0.0 -4,-5 0.0009 3 -2.0 MINOR ENSMUSG00000040557 Mettl27 ENSMUST00000111218 ENSMUSP00000106849 TRANSLATION protein_coding - CCDS19727.1 1 238.0 24.0 5.099 2.7 58.5 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000029004 Kmt2e ENSMUST00000197591 - NO_TRANSLATION retained_intron ENSMUSG00000029004 Kmt2e ENSMUST00000196889 ENSMUSP00000142568 TRANSLATION nonsense_mediated_decay - - 1 377.0 10.0 3.3 0.0 39.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029004 Kmt2e ENSMUST00000126586 ENSMUSP00000141126 TRANSLATION nonsense_mediated_decay start - 5 245.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 3 -2.0 MINOR ENSMUSG00000029004 Kmt2e ENSMUST00000194010 ENSMUSP00000141393 TRANSLATION nonsense_mediated_decay start - 5 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0184 - -2.0 MINOR ENSMUSG00000029004 Kmt2e ENSMUST00000200330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029004 Kmt2e ENSMUST00000196260 ENSMUSP00000143791 TRANSLATION protein_coding start/stop - 5 244.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0011 - -2.0 MINOR ENSMUSG00000029004 Kmt2e ENSMUST00000146375 ENSMUSP00000142547 TRANSLATION nonsense_mediated_decay start - 1 183.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029004 Kmt2e ENSMUST00000115128 ENSMUSP00000110781 TRANSLATION protein_coding - CCDS51430.1 5 1868.0 15.0 5.3 0.0 77.2 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000029004 Kmt2e ENSMUST00000094962 ENSMUSP00000092569 TRANSLATION protein_coding - CCDS51430.1 5 1868.0 15.0 5.3 0.0 77.2 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000038319 Kcnh2 ENSMUST00000129246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038319 Kcnh2 ENSMUST00000115098 ENSMUSP00000110750 TRANSLATION protein_coding - CCDS80224.1 1 820.0 0.0 4.564 5.3 166.9 3.0 -4,-7 0.3863 4 4.736 MINOR ENSMUSG00000038319 Kcnh2 ENSMUST00000036092 ENSMUSP00000047705 TRANSLATION protein_coding - CCDS19116.1 1 1162.0 0.0 7.314 4.2 229.6 3.0 -4,-2 1.0 11 13.488 PRINCIPAL:1 ENSMUSG00000038319 Kcnh2 ENSMUST00000126791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038319 Kcnh2 ENSMUST00000142197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018263 Tbx5 ENSMUST00000018407 ENSMUSP00000018407 TRANSLATION protein_coding - CCDS19615.1 1 518.0 5.0 5.5 29.4 272.4 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000018263 Tbx5 ENSMUST00000202723 ENSMUSP00000144418 TRANSLATION protein_coding stop - 3 120.0 5.0 2.5 0.0 91.5 0.0 -4,-5 0.0005 2 -2.0 MINOR ENSMUSG00000018263 Tbx5 ENSMUST00000202504 ENSMUSP00000143828 TRANSLATION protein_coding stop - 5 218.0 5.0 4.5 0.0 228.0 0.0 -4,-5 0.0018 2 -2.0 MINOR ENSMUSG00000035528 Npffr2 ENSMUST00000048557 ENSMUSP00000040033 TRANSLATION protein_coding - CCDS19408.1 1 417.0 0.0 3.0 5.1 189.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000052139 Babam2 ENSMUST00000201592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052139 Babam2 ENSMUST00000201107 - NO_TRANSLATION retained_intron ENSMUSG00000052139 Babam2 ENSMUST00000063813 ENSMUSP00000069133 TRANSLATION protein_coding - CCDS19189.1 1 420.0 0.0 8.75 0.0 433.9 0.0 -4,-7 0.017 7 5.544 MINOR ENSMUSG00000052139 Babam2 ENSMUST00000114507 ENSMUSP00000110152 TRANSLATION protein_coding - CCDS51461.1 1 319.0 0.0 8.75 0.0 391.1 0.0 -4,-5 0.0075 5 2.976 MINOR ENSMUSG00000052139 Babam2 ENSMUST00000202815 ENSMUSP00000144497 TRANSLATION protein_coding stop - 3 63.0 0.0 2.0 0.0 53.8 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000052139 Babam2 ENSMUST00000200705 ENSMUSP00000143964 TRANSLATION nonsense_mediated_decay - - 5 205.0 0.0 5.75 0.0 231.6 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000052139 Babam2 ENSMUST00000114515 ENSMUSP00000110160 TRANSLATION protein_coding - - 5 385.0 0.0 10.0 0.0 474.8 0.0 -4,-7 0.1306 7 10.5 MINOR ENSMUSG00000052139 Babam2 ENSMUST00000202080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052139 Babam2 ENSMUST00000201487 - NO_TRANSLATION retained_intron ENSMUSG00000052139 Babam2 ENSMUST00000202087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052139 Babam2 ENSMUST00000131995 ENSMUSP00000128351 TRANSLATION protein_coding - CCDS39059.1 1 245.0 0.0 6.75 0.1 287.8 0.0 -4,-5 0.0042 5 0.0 MINOR ENSMUSG00000052139 Babam2 ENSMUST00000202270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052139 Babam2 ENSMUST00000201202 - NO_TRANSLATION retained_intron ENSMUSG00000052139 Babam2 ENSMUST00000071531 ENSMUSP00000071462 TRANSLATION protein_coding - CCDS39058.1 1 374.0 0.0 9.5 0.0 433.9 0.0 -4,-5 0.0659 6 7.044 MINOR ENSMUSG00000052139 Babam2 ENSMUST00000201352 ENSMUSP00000144205 TRANSLATION protein_coding - CCDS19188.1 1 383.0 0.0 10.75 34.2 474.8 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000052139 Babam2 ENSMUST00000202293 ENSMUSP00000144322 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 1.25 0.0 28.3 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029179 Zcchc4 ENSMUST00000113904 ENSMUSP00000109537 TRANSLATION protein_coding - CCDS80282.1 1 489.0 11.0 10.45 0.4 135.0 0.0 -4,-5 0.1672 4 14.0 ALTERNATIVE:2 ENSMUSG00000029179 Zcchc4 ENSMUST00000199840 ENSMUSP00000142838 TRANSLATION protein_coding start/stop - 3 143.0 3.0 3.35 0.0 60.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029179 Zcchc4 ENSMUST00000031077 ENSMUSP00000031077 TRANSLATION protein_coding - CCDS39087.1 1 512.0 11.0 10.45 0.0 135.0 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000029179 Zcchc4 ENSMUST00000157074 - NO_TRANSLATION retained_intron ENSMUSG00000029179 Zcchc4 ENSMUST00000113901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029179 Zcchc4 ENSMUST00000143745 - NO_TRANSLATION retained_intron ENSMUSG00000029179 Zcchc4 ENSMUST00000198465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029179 Zcchc4 ENSMUST00000149612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096878 Gm21083 ENSMUST00000188807 ENSMUSP00000143130 TRANSLATION protein_coding - CCDS80211.1 1 256.0 0.0 2.25 0.0 99.4 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040473 Cfap69 ENSMUST00000135252 ENSMUSP00000117518 TRANSLATION protein_coding - - 1 627.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0414 1 0.0 MINOR ENSMUSG00000040473 Cfap69 ENSMUST00000124734 ENSMUSP00000119859 TRANSLATION protein_coding start - 5 170.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0106 1 -2.0 MINOR ENSMUSG00000040473 Cfap69 ENSMUST00000061008 ENSMUSP00000051741 TRANSLATION protein_coding stop - 1 576.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0397 1 -2.0 MINOR ENSMUSG00000040473 Cfap69 ENSMUST00000054865 ENSMUSP00000053206 TRANSLATION protein_coding - CCDS19075.1 1 942.0 0.0 0.0 4.8 0.0 0.0 -4,-5 1.0 3 2.0 PRINCIPAL:1 ENSMUSG00000040473 Cfap69 ENSMUST00000155048 ENSMUSP00000120771 TRANSLATION protein_coding start - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0251 1 -2.0 MINOR ENSMUSG00000040473 Cfap69 ENSMUST00000148347 ENSMUSP00000119944 TRANSLATION protein_coding start - 5 478.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0377 2 -2.0 MINOR ENSMUSG00000040473 Cfap69 ENSMUST00000148193 ENSMUSP00000114623 TRANSLATION protein_coding stop - 3 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0207 - -2.0 MINOR ENSMUSG00000040473 Cfap69 ENSMUST00000196165 ENSMUSP00000143393 TRANSLATION protein_coding - - 1 771.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0537 3 0.0 MINOR ENSMUSG00000040473 Cfap69 ENSMUST00000199314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040473 Cfap69 ENSMUST00000132510 ENSMUSP00000122569 TRANSLATION nonsense_mediated_decay - - 5 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0093 - -2.0 MINOR ENSMUSG00000040473 Cfap69 ENSMUST00000150140 - NO_TRANSLATION retained_intron ENSMUSG00000040473 Cfap69 ENSMUST00000198121 - NO_TRANSLATION retained_intron ENSMUSG00000025746 Il6 ENSMUST00000199183 ENSMUSP00000143293 TRANSLATION protein_coding - - 2 208.0 0.0 3.0 0.0 206.4 0.0 1,-3 0.0357 - 2.34 MINOR ENSMUSG00000025746 Il6 ENSMUST00000195978 ENSMUSP00000143544 TRANSLATION protein_coding - CCDS84856.1 1 165.0 0.0 3.0 0.0 207.1 0.0 1,-3 0.0264 - 2.34 MINOR ENSMUSG00000025746 Il6 ENSMUST00000199765 ENSMUSP00000143157 TRANSLATION protein_coding - - 2 194.0 0.0 4.83 0.0 294.4 0.0 -4,-7 0.043 - 8.0 ALTERNATIVE:2 ENSMUSG00000025746 Il6 ENSMUST00000026845 ENSMUSP00000026845 TRANSLATION protein_coding - CCDS19153.1 1 211.0 0.0 4.83 0.4 294.4 0.0 1,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000039860 Srrm3 ENSMUST00000135615 - NO_TRANSLATION retained_intron ENSMUSG00000039860 Srrm3 ENSMUST00000150566 - NO_TRANSLATION retained_intron ENSMUSG00000039860 Srrm3 ENSMUST00000126232 ENSMUSP00000122821 TRANSLATION protein_coding stop - 3 124.0 0.0 1.5 0.0 59.5 0.0 -4,-5 0.0445 - -2.0 MINOR ENSMUSG00000039860 Srrm3 ENSMUST00000144211 ENSMUSP00000115695 TRANSLATION protein_coding - CCDS39319.2 1 648.0 0.0 1.5 0.1 144.3 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000039860 Srrm3 ENSMUST00000013615 ENSMUSP00000013615 TRANSLATION nonsense_mediated_decay - - 5 342.0 0.0 1.5 0.1 59.5 0.0 -4,-5 0.0481 - -2.0 MINOR ENSMUSG00000039860 Srrm3 ENSMUST00000146038 - NO_TRANSLATION retained_intron ENSMUSG00000041609 Bicdl1 ENSMUST00000141976 ENSMUSP00000120038 TRANSLATION nonsense_mediated_decay - - 2 44.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041609 Bicdl1 ENSMUST00000117847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041609 Bicdl1 ENSMUST00000148276 ENSMUSP00000119664 TRANSLATION protein_coding start/stop - 5 302.0 0.0 1.68 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000041609 Bicdl1 ENSMUST00000118576 ENSMUSP00000112842 TRANSLATION protein_coding - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000041609 Bicdl1 ENSMUST00000141950 ENSMUSP00000119015 TRANSLATION protein_coding start/stop - 3 235.0 0.0 4.25 0.0 32.6 0.0 -4,-5 0.005 1 -2.0 MINOR ENSMUSG00000041609 Bicdl1 ENSMUST00000148627 - NO_TRANSLATION retained_intron ENSMUSG00000041609 Bicdl1 ENSMUST00000201869 - NO_TRANSLATION retained_intron ENSMUSG00000041609 Bicdl1 ENSMUST00000121746 ENSMUSP00000112949 TRANSLATION protein_coding - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000041609 Bicdl1 ENSMUST00000148840 - NO_TRANSLATION retained_intron ENSMUSG00000041609 Bicdl1 ENSMUST00000055408 ENSMUSP00000053547 TRANSLATION protein_coding - CCDS39230.1 1 577.0 0.0 5.18 8.5 32.6 0.0 -3,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000039737 Prkrip1 ENSMUST00000123921 ENSMUSP00000117902 TRANSLATION nonsense_mediated_decay start - 3 83.0 0.0 0.42 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039737 Prkrip1 ENSMUST00000040980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039737 Prkrip1 ENSMUST00000151786 ENSMUSP00000120659 TRANSLATION protein_coding - CCDS19754.1 1 186.0 0.0 4.38 9.1 162.4 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000039737 Prkrip1 ENSMUST00000149151 ENSMUSP00000120639 TRANSLATION protein_coding stop - 3 165.0 0.0 2.8 0.0 0.0 0.0 -4,-2 0.0005 2 -2.0 MINOR ENSMUSG00000056531 Ccdc18 ENSMUST00000195973 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056531 Ccdc18 ENSMUST00000047677 ENSMUSP00000036507 TRANSLATION protein_coding - CCDS39202.1 1 1455.0 0.0 0.68 6.3 0.0 0.0 -4,-5 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000056531 Ccdc18 ENSMUST00000197718 ENSMUSP00000142963 TRANSLATION nonsense_mediated_decay - - 1 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0146 2 -2.0 MINOR ENSMUSG00000056531 Ccdc18 ENSMUST00000200463 - NO_TRANSLATION retained_intron ENSMUSG00000079423 Pramel57 ENSMUST00000200932 ENSMUSP00000144419 TRANSLATION protein_coding - CCDS80342.1 5 481.0 2.0 2.2 0.4 0.0 0.0 -4,-6 0.9622 - 8.001 PRINCIPAL:2 ENSMUSG00000079423 Pramel57 ENSMUST00000249336 ENSMUSP00000159703 TRANSLATION protein_coding - CCDS51562.1 - 284.0 3.0 1.8 0.4 0.0 0.0 -4,-6 0.1264 - 7.908 ALTERNATIVE:2 ENSMUSG00000079423 Pramel57 ENSMUST00000201629 ENSMUSP00000144438 TRANSLATION protein_coding - CCDS80342.1 3 481.0 2.0 2.2 0.4 0.0 0.0 -4,-6 0.9622 - 8.001 PRINCIPAL:2 ENSMUSG00000015653 Steap2 ENSMUST00000148333 ENSMUSP00000116910 TRANSLATION protein_coding stop - 1 458.0 20.0 4.0 0.0 113.1 6.0 -4,-5 0.0336 6 -2.0 MINOR ENSMUSG00000015653 Steap2 ENSMUST00000115426 ENSMUSP00000111086 TRANSLATION protein_coding - CCDS39007.1 1 489.0 20.0 4.6 30.9 113.1 6.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000015653 Steap2 ENSMUST00000115425 ENSMUSP00000111085 TRANSLATION protein_coding - CCDS39007.1 1 489.0 20.0 4.6 30.9 113.1 6.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000015653 Steap2 ENSMUST00000115424 ENSMUSP00000111084 TRANSLATION protein_coding - CCDS39007.1 1 489.0 20.0 4.6 30.9 113.1 6.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000015653 Steap2 ENSMUST00000015797 ENSMUSP00000015797 TRANSLATION protein_coding - CCDS39007.1 1 489.0 20.0 4.6 30.9 113.1 6.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000015653 Steap2 ENSMUST00000150238 - NO_TRANSLATION retained_intron ENSMUSG00000015653 Steap2 ENSMUST00000115427 ENSMUSP00000111087 TRANSLATION protein_coding - CCDS71541.1 1 402.0 20.0 3.0 0.0 111.3 4.0 -4,-5 0.0405 6 14.694 MINOR ENSMUSG00000015653 Steap2 ENSMUST00000164219 ENSMUSP00000132501 TRANSLATION protein_coding - CCDS39007.1 3 489.0 20.0 4.6 30.9 113.1 6.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000015653 Steap2 ENSMUST00000149412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000121581 ENSMUSG00000121581 ENSMUST00000249254 ENSMUSP00000159634 TRANSLATION protein_coding - - - 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000029141 Slc4a1ap ENSMUST00000201789 ENSMUSP00000144335 TRANSLATION protein_coding start - 3 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029141 Slc4a1ap ENSMUST00000201460 - NO_TRANSLATION retained_intron ENSMUSG00000029141 Slc4a1ap ENSMUST00000201294 - NO_TRANSLATION retained_intron ENSMUSG00000029141 Slc4a1ap ENSMUST00000201925 ENSMUSP00000143852 TRANSLATION protein_coding start - 3 198.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000029141 Slc4a1ap ENSMUST00000201481 - NO_TRANSLATION retained_intron ENSMUSG00000029141 Slc4a1ap ENSMUST00000202214 ENSMUSP00000144613 TRANSLATION protein_coding - CCDS51460.1 5 715.0 0.0 0.8 1.2 64.4 0.0 -4,-5 0.4779 17 12.078 MINOR ENSMUSG00000029141 Slc4a1ap ENSMUST00000202950 ENSMUSP00000144257 TRANSLATION protein_coding - CCDS84865.1 5 744.0 0.0 0.8 6.1 64.4 0.0 -4,-5 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000029141 Slc4a1ap ENSMUST00000202273 ENSMUSP00000144046 TRANSLATION protein_coding start - 2 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029141 Slc4a1ap ENSMUST00000202575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029141 Slc4a1ap ENSMUST00000202299 - NO_TRANSLATION retained_intron ENSMUSG00000029141 Slc4a1ap ENSMUST00000202016 - NO_TRANSLATION retained_intron ENSMUSG00000029141 Slc4a1ap ENSMUST00000114533 ENSMUSP00000110179 TRANSLATION protein_coding - CCDS51460.1 1 715.0 0.0 0.8 1.2 64.4 0.0 -4,-5 0.4779 17 12.078 MINOR ENSMUSG00000029141 Slc4a1ap ENSMUST00000201858 ENSMUSP00000143960 TRANSLATION protein_coding - - 1 534.0 0.0 0.8 0.0 64.4 0.0 -4,-5 0.0606 14 12.0 MINOR ENSMUSG00000070493 Chchd2 ENSMUST00000094280 ENSMUSP00000091835 TRANSLATION protein_coding - CCDS19702.1 1 153.0 0.0 1.0 21.2 0.0 0.0 -3,1 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000070493 Chchd2 ENSMUST00000131645 - NO_TRANSLATION retained_intron ENSMUSG00000032661 Oas3 ENSMUST00000044833 ENSMUSP00000035588 TRANSLATION protein_coding - CCDS39242.1 1 1138.0 20.0 8.098 0.1 831.4 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000032661 Oas3 ENSMUST00000165820 ENSMUSP00000125873 TRANSLATION protein_coding start - 3 131.0 3.0 1.8 0.0 183.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032661 Oas3 ENSMUST00000166703 - NO_TRANSLATION retained_intron ENSMUSG00000032661 Oas3 ENSMUST00000200795 - NO_TRANSLATION retained_intron ENSMUSG00000025857 Dnaaf5 ENSMUST00000196441 ENSMUSP00000142924 TRANSLATION protein_coding - - 1 558.0 0.0 1.232 0.0 24.0 0.0 -4,-5 0.0014 10 5.604 MINOR ENSMUSG00000025857 Dnaaf5 ENSMUST00000026975 ENSMUSP00000026975 TRANSLATION protein_coding - CCDS39349.1 1 853.0 0.0 2.512 1.3 54.0 0.0 -3,-4 1.0 15 13.0 PRINCIPAL:1 ENSMUSG00000025857 Dnaaf5 ENSMUST00000127542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096798 Gm6309 ENSMUST00000174320 ENSMUSP00000134203 TRANSLATION protein_coding - - 5 315.0 0.0 2.5 0.0 28.8 0.0 -4,-1 0.771 - 12.0 PRINCIPAL:1 ENSMUSG00000029714 Gigyf1 ENSMUST00000197624 ENSMUSP00000143670 TRANSLATION protein_coding stop - 5 229.0 0.0 2.8 0.0 0.0 0.0 -4,-5 0.0003 5 -2.0 MINOR ENSMUSG00000029714 Gigyf1 ENSMUST00000031727 ENSMUSP00000031727 TRANSLATION protein_coding - CCDS51673.1 1 1044.0 0.0 3.198 0.0 70.8 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000034211 Mrps17 ENSMUST00000119985 ENSMUSP00000112762 TRANSLATION protein_coding - CCDS19697.1 2 120.0 0.0 3.83 3.9 60.9 0.0 -4,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000034211 Mrps17 ENSMUST00000042191 ENSMUSP00000040281 TRANSLATION protein_coding - CCDS19697.1 1 120.0 0.0 3.83 3.9 60.9 0.0 -4,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000034211 Mrps17 ENSMUST00000121813 ENSMUSP00000114059 TRANSLATION protein_coding - CCDS19697.1 1 120.0 0.0 3.83 3.9 60.9 0.0 -4,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000034211 Mrps17 ENSMUST00000121339 ENSMUSP00000114125 TRANSLATION protein_coding - CCDS19697.1 1 120.0 0.0 3.83 3.9 60.9 0.0 -4,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000034211 Mrps17 ENSMUST00000154358 ENSMUSP00000115189 TRANSLATION protein_coding stop - 5 75.0 0.0 2.33 0.0 52.3 0.0 -4,-2 0.0016 1 -2.0 MINOR ENSMUSG00000034211 Mrps17 ENSMUST00000199999 - NO_TRANSLATION retained_intron ENSMUSG00000034211 Mrps17 ENSMUST00000138812 ENSMUSP00000115097 TRANSLATION protein_coding stop - 1 30.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000034211 Mrps17 ENSMUST00000119576 ENSMUSP00000112779 TRANSLATION protein_coding - CCDS19697.1 2 120.0 0.0 3.83 3.9 60.9 0.0 -4,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000034211 Mrps17 ENSMUST00000118420 ENSMUSP00000112993 TRANSLATION protein_coding - CCDS19697.1 2 120.0 0.0 3.83 3.9 60.9 0.0 -4,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000034211 Mrps17 ENSMUST00000136108 ENSMUSP00000122093 TRANSLATION protein_coding stop - 3 87.0 0.0 2.66 0.0 60.9 0.0 -4,-2 0.0075 2 -2.0 MINOR ENSMUSG00000034211 Mrps17 ENSMUST00000119604 ENSMUSP00000114012 TRANSLATION protein_coding - CCDS19697.1 1 120.0 0.0 3.83 3.9 60.9 0.0 -4,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000051674 Dcun1d4 ENSMUST00000134092 ENSMUSP00000118710 TRANSLATION nonsense_mediated_decay - - 5 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051674 Dcun1d4 ENSMUST00000113558 ENSMUSP00000109187 TRANSLATION protein_coding - CCDS57350.1 1 257.0 0.0 4.83 3.6 53.2 0.0 -4,-5 0.1002 3 7.398 MINOR ENSMUSG00000051674 Dcun1d4 ENSMUST00000141553 ENSMUSP00000114637 TRANSLATION protein_coding stop - 5 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051674 Dcun1d4 ENSMUST00000149970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051674 Dcun1d4 ENSMUST00000063882 ENSMUSP00000067616 TRANSLATION protein_coding - CCDS19342.1 1 292.0 0.0 5.83 17.4 107.2 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000051674 Dcun1d4 ENSMUST00000136268 ENSMUSP00000119983 TRANSLATION protein_coding stop - 3 106.0 0.0 2.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000051674 Dcun1d4 ENSMUST00000087181 ENSMUSP00000084427 TRANSLATION protein_coding - CCDS57349.1 1 306.0 0.0 5.83 2.1 107.2 0.0 -4,-5 0.3353 4 12.268 MINOR ENSMUSG00000051674 Dcun1d4 ENSMUST00000156806 ENSMUSP00000116294 TRANSLATION protein_coding stop - 3 46.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000051674 Dcun1d4 ENSMUST00000130087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051674 Dcun1d4 ENSMUST00000145645 ENSMUSP00000122689 TRANSLATION protein_coding stop - 5 101.0 0.0 2.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000051674 Dcun1d4 ENSMUST00000133137 ENSMUSP00000120055 TRANSLATION nonsense_mediated_decay - - 5 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000139048 ENSMUSP00000116736 TRANSLATION protein_coding start/stop - 5 228.0 0.0 0.375 0.0 0.0 7.0 -4,-5 0.0031 5 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000115386 ENSMUSP00000111044 TRANSLATION protein_coding - - 5 897.0 17.0 13.625 5.3 493.9 7.0 2,-2 0.7188 29 15.41 ALTERNATIVE:1 ENSMUSG00000040537 Adam22 ENSMUST00000123168 ENSMUSP00000122758 TRANSLATION protein_coding start/stop - 5 165.0 0.0 0.375 0.0 0.0 7.0 -4,-6 0.0031 4 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000199853 ENSMUSP00000143097 TRANSLATION protein_coding start - 1 138.0 0.0 0.375 0.0 0.0 7.0 -4,-6 0.0031 - -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000143929 - NO_TRANSLATION retained_intron ENSMUSG00000040537 Adam22 ENSMUST00000050166 ENSMUSP00000055000 TRANSLATION protein_coding - CCDS51411.1 5 868.0 17.0 13.625 7.1 493.9 7.0 2,-2 1.0 30 16.0 ALTERNATIVE:1 ENSMUSG00000040537 Adam22 ENSMUST00000136808 ENSMUSP00000122426 TRANSLATION protein_coding start/stop - 5 249.0 0.0 0.375 0.0 0.0 7.0 -4,-5 0.0047 5 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000197700 ENSMUSP00000142580 TRANSLATION protein_coding start/stop - 1 175.0 0.0 0.375 0.0 0.0 7.0 -4,-6 0.0031 - -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000139841 ENSMUSP00000115775 TRANSLATION protein_coding start/stop - 5 186.0 0.0 0.375 0.0 0.0 7.0 -4,-5 0.0031 4 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000088761 ENSMUSP00000086139 TRANSLATION protein_coding - CCDS80207.1 1 904.0 17.0 13.625 6.0 493.9 7.0 2,-2 0.8988 31 15.64 PRINCIPAL:3 ENSMUSG00000040537 Adam22 ENSMUST00000144241 ENSMUSP00000138353 TRANSLATION nonsense_mediated_decay start - 5 150.0 0.0 0.375 0.0 0.0 7.0 -4,-5 0.0031 2 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000138652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040537 Adam22 ENSMUST00000153889 ENSMUSP00000123196 TRANSLATION protein_coding start/stop - 5 191.0 0.0 0.375 0.0 0.0 7.0 -4,-5 0.0031 6 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000115385 ENSMUSP00000111043 TRANSLATION protein_coding - - 2 333.0 2.0 2.5 0.0 191.9 0.0 2,-2 0.0009 7 0.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000124121 ENSMUSP00000122652 TRANSLATION protein_coding start - 1 251.0 0.0 2.375 0.0 28.8 7.0 -4,-6 0.0038 7 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000126384 ENSMUSP00000118571 TRANSLATION protein_coding start/stop - 5 220.0 0.0 0.375 0.0 0.0 7.0 -4,-5 0.0031 6 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000115388 ENSMUSP00000111046 TRANSLATION protein_coding - CCDS80205.1 5 899.0 17.0 13.625 4.2 493.9 7.0 2,-2 0.7537 29 15.05 ALTERNATIVE:2 ENSMUSG00000040537 Adam22 ENSMUST00000130315 ENSMUSP00000121156 TRANSLATION protein_coding start/stop - 5 192.0 0.0 0.375 0.0 0.0 7.0 -4,-6 0.0031 4 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000153427 ENSMUSP00000120995 TRANSLATION protein_coding start/stop - 5 251.0 0.0 0.375 0.0 0.0 7.0 -4,-5 0.0047 5 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000088744 ENSMUSP00000086122 TRANSLATION protein_coding - - 5 927.0 17.0 13.625 3.5 493.9 7.0 2,-2 0.5416 31 14.82 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000154935 ENSMUSP00000119409 TRANSLATION protein_coding start/stop - 5 267.0 0.0 0.375 0.0 0.0 7.0 -4,-5 0.0047 5 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000046838 ENSMUSP00000049120 TRANSLATION protein_coding - CCDS19080.1 1 857.0 17.0 13.625 1.3 493.9 7.0 2,-2 0.5254 27 14.098 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000136524 ENSMUSP00000116422 TRANSLATION protein_coding start/stop - 5 194.0 0.0 0.375 0.0 0.0 7.0 -4,-6 0.0031 5 -2.0 MINOR ENSMUSG00000040537 Adam22 ENSMUST00000196356 - NO_TRANSLATION retained_intron ENSMUSG00000057541 Pus7 ENSMUST00000131992 ENSMUSP00000123129 TRANSLATION protein_coding - CCDS51431.1 1 660.0 0.0 11.8425 2.9 0.0 0.0 -4,-5 1.0 18 7.0 PRINCIPAL:4 ENSMUSG00000057541 Pus7 ENSMUST00000151449 ENSMUSP00000120575 TRANSLATION nonsense_mediated_decay start - 3 176.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0024 3 -2.0 MINOR ENSMUSG00000057541 Pus7 ENSMUST00000131404 ENSMUSP00000122033 TRANSLATION nonsense_mediated_decay start - 5 185.0 0.0 4.316 0.0 0.0 0.0 -4,-5 0.0013 8 -2.0 MINOR ENSMUSG00000057541 Pus7 ENSMUST00000129848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057541 Pus7 ENSMUST00000148618 ENSMUSP00000114588 TRANSLATION protein_coding - CCDS80219.1 1 666.0 0.0 11.5125 2.9 0.0 0.0 -4,-5 0.9032 18 6.34 ALTERNATIVE:2 ENSMUSG00000057541 Pus7 ENSMUST00000148921 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057541 Pus7 ENSMUST00000119946 ENSMUSP00000113801 TRANSLATION protein_coding - CCDS51431.1 1 660.0 0.0 11.8425 2.9 0.0 0.0 -4,-5 1.0 18 7.0 PRINCIPAL:4 ENSMUSG00000057541 Pus7 ENSMUST00000147922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057541 Pus7 ENSMUST00000195909 - NO_TRANSLATION retained_intron ENSMUSG00000029093 Sorcs2 ENSMUST00000137040 - NO_TRANSLATION retained_intron ENSMUSG00000029093 Sorcs2 ENSMUST00000141508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029093 Sorcs2 ENSMUST00000135324 ENSMUSP00000123543 TRANSLATION protein_coding stop - 3 172.0 0.0 4.58 0.0 80.7 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000029093 Sorcs2 ENSMUST00000070720 ENSMUSP00000065292 TRANSLATION protein_coding - - 1 232.0 0.0 2.03 0.0 0.0 0.0 -2,-5 0.0 6 0.0 MINOR ENSMUSG00000029093 Sorcs2 ENSMUST00000037370 ENSMUSP00000041828 TRANSLATION protein_coding - CCDS19237.1 1 1159.0 0.0 21.728 2.4 497.4 0.0 -2,-5 1.0 28 13.0 PRINCIPAL:1 ENSMUSG00000039474 Wfs1 ENSMUST00000043964 ENSMUSP00000048053 TRANSLATION protein_coding - CCDS19245.1 1 890.0 0.0 0.0 2.0 0.0 7.0 -4,-7 1.0 18 1.0 PRINCIPAL:2 ENSMUSG00000039474 Wfs1 ENSMUST00000167937 ENSMUSP00000125779 TRANSLATION nonsense_mediated_decay start - 5 157.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0131 4 -2.0 MINOR ENSMUSG00000039474 Wfs1 ENSMUST00000166339 ENSMUSP00000132404 TRANSLATION protein_coding - - 1 814.0 0.0 0.0 0.0 0.0 6.0 -4,-7 0.0931 17 0.0 ALTERNATIVE:2 ENSMUSG00000061118 Dnajc30 ENSMUST00000071263 ENSMUSP00000094318 TRANSLATION protein_coding - CCDS39315.1 - 219.0 0.0 0.6 3.5 69.2 0.0 1,3 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000040514 Tex47 ENSMUST00000160634 ENSMUSP00000125471 TRANSLATION protein_coding - CCDS19078.1 1 253.0 0.0 0.0 10.3 0.0 0.0 -4,-2 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000040514 Tex47 ENSMUST00000159546 ENSMUSP00000124368 TRANSLATION protein_coding - CCDS19078.1 1 253.0 0.0 0.0 10.3 0.0 0.0 -4,-2 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000040514 Tex47 ENSMUST00000088796 ENSMUSP00000086176 TRANSLATION protein_coding - CCDS19078.1 1 253.0 0.0 0.0 10.3 0.0 0.0 -4,-2 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000040514 Tex47 ENSMUST00000196680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054520 Sh3bp2 ENSMUST00000179943 ENSMUSP00000136671 TRANSLATION protein_coding - CCDS19215.1 1 559.0 12.0 4.6 5.3 98.4 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:2 ENSMUSG00000054520 Sh3bp2 ENSMUST00000067638 ENSMUSP00000070890 TRANSLATION protein_coding - CCDS19215.1 1 559.0 12.0 4.6 5.3 98.4 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:2 ENSMUSG00000054520 Sh3bp2 ENSMUST00000118545 ENSMUSP00000112554 TRANSLATION protein_coding - CCDS51470.1 1 615.0 12.0 4.6 4.2 98.4 0.0 -4,-7 0.7037 8 15.488 ALTERNATIVE:2 ENSMUSG00000054520 Sh3bp2 ENSMUST00000153750 - NO_TRANSLATION retained_intron ENSMUSG00000054520 Sh3bp2 ENSMUST00000202745 - NO_TRANSLATION retained_intron ENSMUSG00000054520 Sh3bp2 ENSMUST00000101316 ENSMUSP00000098874 TRANSLATION protein_coding - CCDS51469.1 1 603.0 12.0 4.6 0.1 98.4 0.0 -4,-7 0.2022 8 14.0 MINOR ENSMUSG00000054520 Sh3bp2 ENSMUST00000125817 ENSMUSP00000123177 TRANSLATION protein_coding stop - 2 45.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054520 Sh3bp2 ENSMUST00000138912 ENSMUSP00000114416 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000050010 Shisa3 ENSMUST00000087241 ENSMUSP00000084494 TRANSLATION protein_coding - CCDS19318.1 1 238.0 0.0 1.0 5.6 183.9 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000050010 Shisa3 ENSMUST00000142843 ENSMUSP00000138599 TRANSLATION nonsense_mediated_decay - - 2 100.0 0.0 1.0 0.0 93.5 0.0 4,-1 0.0399 - -2.0 MINOR ENSMUSG00000037390 Muc17 ENSMUST00000160630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037390 Muc17 ENSMUST00000041226 ENSMUSP00000045196 TRANSLATION protein_coding - - 1 4499.0 0.0 3.63 0.0 0.0 0.0 3,-4 0.8811 10 6.0 PRINCIPAL:1 ENSMUSG00000044017 Adgrd1 ENSMUST00000156437 ENSMUSP00000121217 TRANSLATION protein_coding - CCDS84966.1 1 871.0 0.0 5.34 7.0 287.2 7.0 4,-1 1.0 2 10.0 PRINCIPAL:4 ENSMUSG00000044017 Adgrd1 ENSMUST00000155590 - NO_TRANSLATION retained_intron ENSMUSG00000044017 Adgrd1 ENSMUST00000056617 ENSMUSP00000060307 TRANSLATION protein_coding - CCDS39289.1 1 903.0 0.0 5.34 6.1 287.2 7.0 4,-1 0.9084 2 9.7 ALTERNATIVE:1 ENSMUSG00000018974 Sart3 ENSMUST00000197041 ENSMUSP00000143778 TRANSLATION nonsense_mediated_decay - - 1 401.0 0.0 5.5 0.0 0.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000018974 Sart3 ENSMUST00000196778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018974 Sart3 ENSMUST00000198556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018974 Sart3 ENSMUST00000019118 ENSMUSP00000019118 TRANSLATION protein_coding - CCDS19552.1 1 962.0 0.0 15.37 4.8 220.4 0.0 -4,-5 1.0 29 14.0 PRINCIPAL:1 ENSMUSG00000018974 Sart3 ENSMUST00000198246 - NO_TRANSLATION retained_intron ENSMUSG00000018974 Sart3 ENSMUST00000196738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018974 Sart3 ENSMUST00000198097 - NO_TRANSLATION retained_intron ENSMUSG00000039252 Lgi2 ENSMUST00000199942 ENSMUSP00000143707 TRANSLATION protein_coding - CCDS80281.1 1 542.0 0.0 6.6 4.6 286.0 0.0 1,-5 1.0 12 13.358 PRINCIPAL:1 ENSMUSG00000039252 Lgi2 ENSMUST00000039750 ENSMUSP00000040436 TRANSLATION protein_coding - CCDS19285.1 1 550.0 0.0 6.25 0.0 296.7 0.0 1,-5 0.3256 12 11.298 MINOR ENSMUSG00000041697 Cox6a1 ENSMUST00000137766 - NO_TRANSLATION retained_intron ENSMUSG00000041697 Cox6a1 ENSMUST00000040154 ENSMUSP00000047661 TRANSLATION protein_coding - - 1 111.0 0.0 1.75 14.2 0.0 0.0 -4,0 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000054280 Prr14l ENSMUST00000120129 ENSMUSP00000113259 TRANSLATION protein_coding - CCDS19195.2 5 1971.0 0.0 0.0 0.0 84.2 0.0 -4,-5 1.0 15 6.0 PRINCIPAL:1 ENSMUSG00000054280 Prr14l ENSMUST00000147752 - NO_TRANSLATION retained_intron ENSMUSG00000054280 Prr14l ENSMUST00000130134 ENSMUSP00000135589 TRANSLATION protein_coding stop - 5 33.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.006 - -2.0 MINOR ENSMUSG00000054280 Prr14l ENSMUST00000155392 ENSMUSP00000119569 TRANSLATION nonsense_mediated_decay start - 5 661.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0059 4 -2.0 MINOR ENSMUSG00000035020 Epgn ENSMUST00000041516 ENSMUSP00000046987 TRANSLATION protein_coding - CCDS19419.1 1 152.0 0.0 1.4 12.0 0.0 1.0 3,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000035020 Epgn ENSMUST00000202724 ENSMUSP00000144500 TRANSLATION protein_coding - - 1 137.0 0.0 1.4 1.1 0.0 1.0 -4,-5 0.156 - 6.027 MINOR ENSMUSG00000041827 Oasl1 ENSMUST00000031540 ENSMUSP00000031540 TRANSLATION protein_coding - CCDS19575.1 1 511.0 1.0 5.8 5.6 313.0 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000041827 Oasl1 ENSMUST00000155394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041827 Oasl1 ENSMUST00000112143 ENSMUSP00000107771 TRANSLATION protein_coding - CCDS19575.1 1 511.0 1.0 5.8 5.6 313.0 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000041827 Oasl1 ENSMUST00000155274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041827 Oasl1 ENSMUST00000140159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041827 Oasl1 ENSMUST00000152329 - NO_TRANSLATION retained_intron ENSMUSG00000095829 Speer1 ENSMUST00000172106 ENSMUSP00000132617 TRANSLATION protein_coding - - 5 157.0 0.0 1.306 0.0 80.7 0.0 -4,-7 0.772 - 12.0 PRINCIPAL:1 ENSMUSG00000095829 Speer1 ENSMUST00000179482 ENSMUSP00000136498 TRANSLATION protein_coding start - 5 154.0 0.0 1.306 0.0 80.7 0.0 -4,-5 0.1532 - -2.0 MINOR ENSMUSG00000033970 Rfc3 ENSMUST00000127366 - NO_TRANSLATION retained_intron ENSMUSG00000033970 Rfc3 ENSMUST00000156667 - NO_TRANSLATION retained_intron ENSMUSG00000033970 Rfc3 ENSMUST00000145106 - NO_TRANSLATION retained_intron ENSMUSG00000033970 Rfc3 ENSMUST00000140067 - NO_TRANSLATION retained_intron ENSMUSG00000033970 Rfc3 ENSMUST00000132709 - NO_TRANSLATION retained_intron ENSMUSG00000033970 Rfc3 ENSMUST00000038131 ENSMUSP00000039621 TRANSLATION protein_coding - CCDS39413.1 1 356.0 13.0 8.25 34.8 30.3 0.0 -4,-6 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000033970 Rfc3 ENSMUST00000136752 - NO_TRANSLATION retained_intron ENSMUSG00000029344 Tpst2 ENSMUST00000134071 - NO_TRANSLATION retained_intron ENSMUSG00000029344 Tpst2 ENSMUST00000239473 ENSMUSP00000159350 TRANSLATION protein_coding - CCDS19538.2 - 390.0 11.0 3.3 0.1 200.0 0.0 1,-5 0.2482 6 18.0 MINOR ENSMUSG00000029344 Tpst2 ENSMUST00000151947 ENSMUSP00000114592 TRANSLATION protein_coding stop - 3 32.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0022 - -2.0 MINOR ENSMUSG00000029344 Tpst2 ENSMUST00000139482 - NO_TRANSLATION retained_intron ENSMUSG00000029344 Tpst2 ENSMUST00000031287 ENSMUSP00000031287 TRANSLATION protein_coding - - 1 376.0 11.0 3.3 15.9 200.0 0.0 1,-3 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000029344 Tpst2 ENSMUST00000198502 ENSMUSP00000142679 TRANSLATION protein_coding start - 5 122.0 1.0 1.3 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029344 Tpst2 ENSMUST00000071455 ENSMUSP00000071399 TRANSLATION protein_coding - - 1 376.0 11.0 3.3 15.9 200.0 0.0 1,-3 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000029344 Tpst2 ENSMUST00000140262 ENSMUSP00000116816 TRANSLATION nonsense_mediated_decay start - 3 63.0 2.0 1.0 0.0 42.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029275 Gfi1 ENSMUST00000159263 ENSMUSP00000135880 TRANSLATION protein_coding stop - 3 186.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000029275 Gfi1 ENSMUST00000031205 ENSMUSP00000135884 TRANSLATION protein_coding - CCDS57371.1 1 423.0 23.0 2.866 10.3 122.0 0.0 -4,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000029275 Gfi1 ENSMUST00000065478 ENSMUSP00000135039 TRANSLATION protein_coding - CCDS59680.1 1 489.0 23.0 2.866 0.0 122.0 0.0 -3,-6 0.1218 1 18.0 MINOR ENSMUSG00000029275 Gfi1 ENSMUST00000159164 ENSMUSP00000137229 TRANSLATION protein_coding - CCDS57371.1 1 423.0 23.0 2.866 10.3 122.0 0.0 -4,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000041147 Brca2 ENSMUST00000202003 ENSMUSP00000144676 TRANSLATION protein_coding stop - 1 992.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0117 - -2.0 MINOR ENSMUSG00000041147 Brca2 ENSMUST00000202975 - NO_TRANSLATION retained_intron ENSMUSG00000041147 Brca2 ENSMUST00000201309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041147 Brca2 ENSMUST00000202313 ENSMUSP00000144150 TRANSLATION protein_coding - CCDS39411.1 1 3329.0 0.0 10.13 0.0 932.3 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000041147 Brca2 ENSMUST00000201149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041147 Brca2 ENSMUST00000201165 - NO_TRANSLATION retained_intron ENSMUSG00000041147 Brca2 ENSMUST00000044620 ENSMUSP00000038576 TRANSLATION protein_coding - CCDS39411.1 5 3329.0 0.0 10.13 0.0 932.3 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000041147 Brca2 ENSMUST00000202192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041147 Brca2 ENSMUST00000201226 - NO_TRANSLATION retained_intron ENSMUSG00000041147 Brca2 ENSMUST00000202693 - NO_TRANSLATION retained_intron ENSMUSG00000041147 Brca2 ENSMUST00000202837 - NO_TRANSLATION retained_intron ENSMUSG00000041147 Brca2 ENSMUST00000201678 - NO_TRANSLATION retained_intron ENSMUSG00000041147 Brca2 ENSMUST00000202727 - NO_TRANSLATION retained_intron ENSMUSG00000041147 Brca2 ENSMUST00000200686 - NO_TRANSLATION retained_intron ENSMUSG00000043388 Tmem130 ENSMUST00000061446 ENSMUSP00000061100 TRANSLATION protein_coding - CCDS19851.1 1 419.0 0.0 0.0 0.4 32.3 0.0 3,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000043388 Tmem130 ENSMUST00000197254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096066 Pramel46 ENSMUST00000201031 ENSMUSP00000144603 TRANSLATION protein_coding - - 5 481.0 2.0 2.3 0.4 0.0 0.0 -4,-7 0.649 - 8.0 PRINCIPAL:1 ENSMUSG00000095296 Gm8906 ENSMUST00000164651 ENSMUSP00000128633 TRANSLATION protein_coding - - 5 199.0 0.0 1.306 0.0 80.4 0.0 -4,-2 0.7816 - 12.0 PRINCIPAL:1 ENSMUSG00000029206 Nsun7 ENSMUST00000202994 ENSMUSP00000144498 TRANSLATION protein_coding - CCDS80291.1 1 691.0 0.0 1.507 0.0 0.0 0.0 -4,-5 0.31 1 6.0 MINOR ENSMUSG00000029206 Nsun7 ENSMUST00000200891 - NO_TRANSLATION retained_intron ENSMUSG00000029206 Nsun7 ENSMUST00000031109 ENSMUSP00000031109 TRANSLATION protein_coding - CCDS80290.1 5 705.0 0.0 0.757 0.1 27.9 0.0 -4,-5 0.5202 1 9.012 ALTERNATIVE:2 ENSMUSG00000029206 Nsun7 ENSMUST00000201100 ENSMUSP00000144520 TRANSLATION protein_coding - CCDS19314.1 5 700.0 0.0 0.757 0.0 27.9 0.0 -4,-5 1.0 1 9.012 PRINCIPAL:2 ENSMUSG00000029161 Cgref1 ENSMUST00000031051 ENSMUSP00000031051 TRANSLATION protein_coding - - 1 280.0 8.0 2.7 0.0 0.0 0.0 4,-1 0.7328 7 12.0 PRINCIPAL:1 ENSMUSG00000029161 Cgref1 ENSMUST00000202627 - NO_TRANSLATION retained_intron ENSMUSG00000053293 Pom121 ENSMUST00000111171 ENSMUSP00000106801 TRANSLATION protein_coding - CCDS51662.1 1 1200.0 0.0 1.8 0.1 363.2 0.0 -4,-2 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000039771 Polr2j ENSMUST00000041366 ENSMUSP00000038505 TRANSLATION protein_coding - CCDS19751.1 1 117.0 0.0 2.83 34.9 97.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000039771 Polr2j ENSMUST00000111129 ENSMUSP00000106759 TRANSLATION protein_coding - - 3 87.0 0.0 1.83 2.1 63.2 0.0 -4,-5 0.0315 1 7.892 MINOR ENSMUSG00000039771 Polr2j ENSMUST00000111127 ENSMUSP00000106757 TRANSLATION protein_coding - - 2 111.0 0.0 2.5 0.0 97.7 0.0 -4,-5 0.0045 5 11.298 MINOR ENSMUSG00000072763 Zfp1007 ENSMUST00000092720 ENSMUSP00000090395 TRANSLATION protein_coding - - 5 667.0 76.0 1.0 0.0 454.6 0.0 -4,-5 0.8494 - 18.0 PRINCIPAL:1 ENSMUSG00000042190 Cmklr1 ENSMUST00000142854 ENSMUSP00000115784 TRANSLATION protein_coding stop - 5 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0151 - -2.0 MINOR ENSMUSG00000042190 Cmklr1 ENSMUST00000047936 ENSMUSP00000036316 TRANSLATION protein_coding - CCDS19551.1 1 371.0 0.0 0.98 5.9 137.0 9.0 -4,-6 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000042190 Cmklr1 ENSMUST00000132065 ENSMUSP00000121765 TRANSLATION protein_coding stop - 1 301.0 0.0 0.5 0.0 121.8 8.0 -4,-6 0.0169 - -2.0 MINOR ENSMUSG00000042190 Cmklr1 ENSMUST00000151460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004846 Plod3 ENSMUST00000127100 ENSMUSP00000123550 TRANSLATION protein_coding start/stop - 1 200.0 2.0 4.25 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000004846 Plod3 ENSMUST00000129896 - NO_TRANSLATION retained_intron ENSMUSG00000004846 Plod3 ENSMUST00000004968 ENSMUSP00000004968 TRANSLATION protein_coding - CCDS19759.1 1 741.0 3.0 17.75 4.0 24.6 0.0 3,-2 1.0 18 17.0 PRINCIPAL:1 ENSMUSG00000004846 Plod3 ENSMUST00000137419 - NO_TRANSLATION retained_intron ENSMUSG00000004846 Plod3 ENSMUST00000151642 - NO_TRANSLATION retained_intron ENSMUSG00000004846 Plod3 ENSMUST00000144784 - NO_TRANSLATION retained_intron ENSMUSG00000051503 Ccdc121rt3 ENSMUST00000051117 ENSMUSP00000049839 TRANSLATION protein_coding - CCDS51615.1 - 469.0 0.0 0.0 0.0 256.2 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000018965 Ywhah ENSMUST00000019109 ENSMUSP00000019109 TRANSLATION protein_coding - CCDS19198.1 1 246.0 0.0 1.75 36.9 346.3 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000018965 Ywhah ENSMUST00000136667 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018965 Ywhah ENSMUST00000199651 - NO_TRANSLATION retained_intron ENSMUSG00000018965 Ywhah ENSMUST00000138261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029326 Enoph1 ENSMUST00000199518 - NO_TRANSLATION retained_intron ENSMUSG00000029326 Enoph1 ENSMUST00000031268 ENSMUSP00000031268 TRANSLATION protein_coding - CCDS39183.1 1 257.0 3.0 5.75 19.0 0.0 0.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000029326 Enoph1 ENSMUST00000200223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029326 Enoph1 ENSMUST00000169390 ENSMUSP00000129704 TRANSLATION protein_coding - CCDS39183.1 1 257.0 3.0 5.75 19.0 0.0 0.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000029647 Pan3 ENSMUST00000176856 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029647 Pan3 ENSMUST00000202559 - NO_TRANSLATION retained_intron ENSMUSG00000029647 Pan3 ENSMUST00000177327 - NO_TRANSLATION retained_intron ENSMUSG00000029647 Pan3 ENSMUST00000200885 ENSMUSP00000144495 TRANSLATION protein_coding start/stop - 3 156.0 2.0 0.76 0.0 0.0 0.0 -4,-6 0.0085 2 -2.0 MINOR ENSMUSG00000029647 Pan3 ENSMUST00000176466 ENSMUSP00000135673 TRANSLATION nonsense_mediated_decay start - 5 183.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0173 1 -2.0 MINOR ENSMUSG00000029647 Pan3 ENSMUST00000176806 - NO_TRANSLATION retained_intron ENSMUSG00000029647 Pan3 ENSMUST00000176753 ENSMUSP00000134989 TRANSLATION protein_coding start - 5 688.0 10.0 8.095 1.4 0.0 0.0 -4,-5 0.0696 10 -2.0 MINOR ENSMUSG00000029647 Pan3 ENSMUST00000175807 ENSMUSP00000135729 TRANSLATION protein_coding start - 5 458.0 9.0 7.095 0.0 0.0 0.0 -4,-5 0.0214 9 -2.0 MINOR ENSMUSG00000029647 Pan3 ENSMUST00000202732 - NO_TRANSLATION retained_intron ENSMUSG00000029647 Pan3 ENSMUST00000177465 ENSMUSP00000134810 TRANSLATION nonsense_mediated_decay start - 5 210.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0314 1 -2.0 MINOR ENSMUSG00000029647 Pan3 ENSMUST00000201248 - NO_TRANSLATION retained_intron ENSMUSG00000029647 Pan3 ENSMUST00000176202 - NO_TRANSLATION retained_intron ENSMUSG00000029647 Pan3 ENSMUST00000202884 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029647 Pan3 ENSMUST00000176505 - NO_TRANSLATION retained_intron ENSMUSG00000029647 Pan3 ENSMUST00000177496 - NO_TRANSLATION retained_intron ENSMUSG00000029647 Pan3 ENSMUST00000176553 ENSMUSP00000134911 TRANSLATION protein_coding start - 3 205.0 0.0 3.75 0.0 0.0 0.0 -4,-5 0.0079 3 -2.0 MINOR ENSMUSG00000029647 Pan3 ENSMUST00000176600 ENSMUSP00000135367 TRANSLATION protein_coding - - 5 887.0 10.0 8.095 0.0 0.0 0.0 -1,1 0.7319 11 12.0 PRINCIPAL:2 ENSMUSG00000029647 Pan3 ENSMUST00000176596 ENSMUSP00000135477 TRANSLATION nonsense_mediated_decay start - 1 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0145 1 -2.0 MINOR ENSMUSG00000029647 Pan3 ENSMUST00000176357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029647 Pan3 ENSMUST00000177328 - NO_TRANSLATION retained_intron ENSMUSG00000029647 Pan3 ENSMUST00000201799 - NO_TRANSLATION retained_intron ENSMUSG00000029647 Pan3 ENSMUST00000031651 ENSMUSP00000031651 TRANSLATION protein_coding - CCDS39401.2 5 837.0 10.0 8.095 0.0 0.0 0.0 -1,1 0.4375 11 12.0 ALTERNATIVE:2 ENSMUSG00000029647 Pan3 ENSMUST00000176817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029195 Klb ENSMUST00000203333 - NO_TRANSLATION retained_intron ENSMUSG00000029195 Klb ENSMUST00000205084 ENSMUSP00000145091 TRANSLATION nonsense_mediated_decay - - 1 361.0 0.0 2.0 0.0 305.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029195 Klb ENSMUST00000031096 ENSMUSP00000031096 TRANSLATION protein_coding - CCDS19306.1 1 1043.0 1.0 5.24 6.7 674.6 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000029440 Psmd9 ENSMUST00000200560 - NO_TRANSLATION TEC ENSMUSG00000029440 Psmd9 ENSMUST00000199260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029440 Psmd9 ENSMUST00000133386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029440 Psmd9 ENSMUST00000196137 - NO_TRANSLATION retained_intron ENSMUSG00000029440 Psmd9 ENSMUST00000198183 ENSMUSP00000142433 TRANSLATION protein_coding start - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000029440 Psmd9 ENSMUST00000100729 ENSMUSP00000098295 TRANSLATION protein_coding - CCDS39266.1 1 222.0 0.0 2.805 6.1 27.5 0.0 -4,-5 1.0 8 13.73 PRINCIPAL:1 ENSMUSG00000029440 Psmd9 ENSMUST00000197809 ENSMUSP00000143635 TRANSLATION protein_coding start - 3 175.0 0.0 2.265 0.0 28.8 0.0 -4,-5 0.0008 6 -2.0 MINOR ENSMUSG00000025340 Rabgef1 ENSMUST00000125937 - NO_TRANSLATION retained_intron ENSMUSG00000025340 Rabgef1 ENSMUST00000143727 - NO_TRANSLATION retained_intron ENSMUSG00000025340 Rabgef1 ENSMUST00000119027 ENSMUSP00000112537 TRANSLATION protein_coding stop - 5 221.0 4.0 4.0 0.0 46.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000025340 Rabgef1 ENSMUST00000119797 ENSMUSP00000114103 TRANSLATION protein_coding - CCDS19708.1 1 491.0 4.0 7.63 24.1 147.2 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000025340 Rabgef1 ENSMUST00000147493 - NO_TRANSLATION retained_intron ENSMUSG00000025340 Rabgef1 ENSMUST00000148264 ENSMUSP00000119245 TRANSLATION protein_coding stop - 5 250.0 4.0 5.08 0.0 46.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000025340 Rabgef1 ENSMUST00000202729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025340 Rabgef1 ENSMUST00000143865 ENSMUSP00000118590 TRANSLATION nonsense_mediated_decay start - 2 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025340 Rabgef1 ENSMUST00000026390 ENSMUSP00000026390 TRANSLATION protein_coding - CCDS19708.1 1 491.0 4.0 7.63 24.1 147.2 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000029017 Pmpcb ENSMUST00000150861 - NO_TRANSLATION retained_intron ENSMUSG00000029017 Pmpcb ENSMUST00000152440 - NO_TRANSLATION retained_intron ENSMUSG00000029017 Pmpcb ENSMUST00000125693 - NO_TRANSLATION retained_intron ENSMUSG00000029017 Pmpcb ENSMUST00000137334 - NO_TRANSLATION retained_intron ENSMUSG00000029017 Pmpcb ENSMUST00000147236 - NO_TRANSLATION retained_intron ENSMUSG00000029017 Pmpcb ENSMUST00000141022 ENSMUSP00000122278 TRANSLATION nonsense_mediated_decay start - 5 15.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029017 Pmpcb ENSMUST00000030882 ENSMUSP00000030882 TRANSLATION protein_coding - CCDS19106.1 1 489.0 4.0 10.38 6.6 316.5 0.0 -4,0 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000029017 Pmpcb ENSMUST00000149648 ENSMUSP00000119619 TRANSLATION protein_coding stop - 5 50.0 0.0 1.0 0.0 60.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029211 Gabra4 ENSMUST00000199150 - NO_TRANSLATION retained_intron ENSMUSG00000029211 Gabra4 ENSMUST00000197994 ENSMUSP00000143063 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029211 Gabra4 ENSMUST00000031121 ENSMUSP00000031121 TRANSLATION protein_coding - CCDS39107.1 1 552.0 0.0 6.43 12.6 315.5 2.0 0,-3 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000029211 Gabra4 ENSMUST00000198138 ENSMUSP00000142466 TRANSLATION protein_coding - - 2 94.0 0.0 0.93 0.0 0.0 0.0 0,-3 0.0025 - 0.0 MINOR ENSMUSG00000029211 Gabra4 ENSMUST00000199357 ENSMUSP00000143675 TRANSLATION protein_coding - - 1 578.0 0.0 6.43 0.0 294.5 2.0 0,-3 0.072 9 10.74 MINOR ENSMUSG00000064267 Hvcn1 ENSMUST00000196187 ENSMUSP00000143483 TRANSLATION protein_coding stop - 5 41.0 0.0 0.0 0.0 0.0 1.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000064267 Hvcn1 ENSMUST00000145854 ENSMUSP00000118151 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000064267 Hvcn1 ENSMUST00000072602 ENSMUSP00000072401 TRANSLATION protein_coding - CCDS19644.1 1 269.0 0.0 5.35 7.6 125.7 5.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000064267 Hvcn1 ENSMUST00000143560 ENSMUSP00000118013 TRANSLATION protein_coding stop - 3 168.0 0.0 2.6 0.0 0.0 3.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000064267 Hvcn1 ENSMUST00000100747 ENSMUSP00000098312 TRANSLATION protein_coding - CCDS19644.1 1 269.0 0.0 5.35 7.6 125.7 5.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000038569 Rad9b ENSMUST00000149600 ENSMUSP00000120843 TRANSLATION protein_coding start - 5 92.0 0.0 1.664 0.0 76.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038569 Rad9b ENSMUST00000200653 - NO_TRANSLATION retained_intron ENSMUSG00000038569 Rad9b ENSMUST00000144268 ENSMUSP00000117334 TRANSLATION protein_coding stop - 3 64.0 0.0 0.864 0.0 51.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038569 Rad9b ENSMUST00000049009 ENSMUSP00000036177 TRANSLATION protein_coding - CCDS19646.1 1 403.0 0.0 6.414 0.3 301.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038569 Rad9b ENSMUST00000117263 ENSMUSP00000113868 TRANSLATION protein_coding - - 1 366.0 0.0 4.414 0.0 233.8 0.0 -4,-6 0.001 - 3.954 MINOR ENSMUSG00000035234 Abraxas1 ENSMUST00000129358 ENSMUSP00000117012 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.001 1 -2.0 MINOR ENSMUSG00000035234 Abraxas1 ENSMUST00000145429 - NO_TRANSLATION retained_intron ENSMUSG00000035234 Abraxas1 ENSMUST00000145707 - NO_TRANSLATION retained_intron ENSMUSG00000035234 Abraxas1 ENSMUST00000131857 - NO_TRANSLATION retained_intron ENSMUSG00000035234 Abraxas1 ENSMUST00000200657 ENSMUSP00000143465 TRANSLATION nonsense_mediated_decay - CCDS19469.1 1 407.0 0.0 7.23 6.3 0.0 0.0 -4,-7 1.0 7 -2.0 MINOR ENSMUSG00000035234 Abraxas1 ENSMUST00000044535 ENSMUSP00000047692 TRANSLATION nonsense_mediated_decay - - 1 261.0 0.0 5.5 0.0 0.0 0.0 -4,-7 0.0095 5 -2.0 MINOR ENSMUSG00000035234 Abraxas1 ENSMUST00000153302 ENSMUSP00000116476 TRANSLATION nonsense_mediated_decay - - 1 46.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0024 - -2.0 MINOR ENSMUSG00000035234 Abraxas1 ENSMUST00000117364 ENSMUSP00000114050 TRANSLATION protein_coding - CCDS19469.1 1 407.0 0.0 7.23 6.3 0.0 0.0 -4,-7 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000035234 Abraxas1 ENSMUST00000055245 ENSMUSP00000055895 TRANSLATION protein_coding - CCDS19469.1 1 407.0 0.0 7.23 6.3 0.0 0.0 -4,-7 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000038770 Kpna7 ENSMUST00000116454 ENSMUSP00000112155 TRANSLATION protein_coding - CCDS19852.1 1 499.0 0.0 7.6 0.3 288.4 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000038770 Kpna7 ENSMUST00000110673 ENSMUSP00000106301 TRANSLATION protein_coding - CCDS84996.1 5 520.0 0.0 7.6 0.0 286.5 0.0 -4,-6 0.3439 - 8.0 ALTERNATIVE:2 ENSMUSG00000038770 Kpna7 ENSMUST00000151196 ENSMUSP00000120277 TRANSLATION protein_coding stop - 5 38.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038770 Kpna7 ENSMUST00000142866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038770 Kpna7 ENSMUST00000139024 ENSMUSP00000121515 TRANSLATION protein_coding stop - 5 166.0 0.0 2.35 0.0 113.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038770 Kpna7 ENSMUST00000110672 ENSMUSP00000106300 TRANSLATION protein_coding - CCDS19852.1 1 499.0 0.0 7.6 0.3 288.4 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000029223 Uchl1 ENSMUST00000202339 - NO_TRANSLATION retained_intron ENSMUSG00000029223 Uchl1 ENSMUST00000177194 - NO_TRANSLATION retained_intron ENSMUSG00000029223 Uchl1 ENSMUST00000031131 ENSMUSP00000031131 TRANSLATION protein_coding - CCDS19315.1 1 223.0 4.0 5.58 28.2 203.1 0.0 -4,-6 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000029223 Uchl1 ENSMUST00000176015 - NO_TRANSLATION retained_intron ENSMUSG00000029246 Ppat ENSMUST00000140076 ENSMUSP00000120632 TRANSLATION protein_coding - CCDS51527.1 1 517.0 24.0 5.4 9.6 0.0 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000029246 Ppat ENSMUST00000031158 - NO_TRANSLATION retained_intron ENSMUSG00000029246 Ppat ENSMUST00000155272 ENSMUSP00000116438 TRANSLATION nonsense_mediated_decay - - 1 53.0 1.0 0.2 0.0 0.0 0.0 -4,-5 0.0065 - -2.0 MINOR ENSMUSG00000029270 Dipk1a ENSMUST00000153172 ENSMUSP00000114892 TRANSLATION protein_coding stop - 3 86.0 0.0 0.0 0.0 95.7 1.0 -4,-1 0.0013 - -2.0 MINOR ENSMUSG00000029270 Dipk1a ENSMUST00000031198 ENSMUSP00000031198 TRANSLATION protein_coding - CCDS39200.1 1 428.0 0.0 0.0 0.0 422.1 1.0 -4,0 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000029270 Dipk1a ENSMUST00000145239 ENSMUSP00000117801 TRANSLATION protein_coding stop - 2 284.0 0.0 0.0 0.0 258.6 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000054252 Fgfr3 ENSMUST00000067150 ENSMUSP00000070998 TRANSLATION protein_coding - CCDS51465.1 1 800.0 19.0 15.62 3.6 466.3 2.0 3,-1 1.0 9 15.0 ALTERNATIVE:2 ENSMUSG00000054252 Fgfr3 ENSMUST00000202138 ENSMUSP00000143945 TRANSLATION protein_coding - CCDS51466.1 1 782.0 19.0 15.42 0.0 466.3 2.0 3,-1 0.3318 9 13.598 MINOR ENSMUSG00000054252 Fgfr3 ENSMUST00000171509 ENSMUSP00000131845 TRANSLATION protein_coding - - 5 802.0 19.0 15.62 3.6 471.1 2.0 3,-1 0.9081 9 15.0 ALTERNATIVE:2 ENSMUSG00000054252 Fgfr3 ENSMUST00000087820 ENSMUSP00000085122 TRANSLATION protein_coding - CCDS51466.1 5 782.0 19.0 15.42 0.0 466.3 2.0 3,-1 0.3318 9 13.598 MINOR ENSMUSG00000054252 Fgfr3 ENSMUST00000155002 ENSMUSP00000119941 TRANSLATION protein_coding stop - 3 47.0 0.0 1.33 0.0 30.8 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000054252 Fgfr3 ENSMUST00000142860 - NO_TRANSLATION retained_intron ENSMUSG00000054252 Fgfr3 ENSMUST00000132724 - NO_TRANSLATION retained_intron ENSMUSG00000054252 Fgfr3 ENSMUST00000134610 - NO_TRANSLATION retained_intron ENSMUSG00000054252 Fgfr3 ENSMUST00000201437 ENSMUSP00000144379 TRANSLATION protein_coding stop - 3 194.0 0.0 2.36 0.0 49.7 0.0 3,-1 0.0 3 -2.0 MINOR ENSMUSG00000054252 Fgfr3 ENSMUST00000152661 - NO_TRANSLATION retained_intron ENSMUSG00000054252 Fgfr3 ENSMUST00000169212 ENSMUSP00000130856 TRANSLATION protein_coding - CCDS51465.1 1 800.0 19.0 15.62 3.6 466.3 2.0 3,-1 1.0 9 15.0 ALTERNATIVE:2 ENSMUSG00000054252 Fgfr3 ENSMUST00000202791 ENSMUSP00000143797 TRANSLATION protein_coding start/stop - 2 260.0 19.0 5.68 0.0 247.3 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000054252 Fgfr3 ENSMUST00000202182 ENSMUSP00000143936 TRANSLATION protein_coding start/stop - 3 216.0 0.0 3.11 0.0 66.3 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000054252 Fgfr3 ENSMUST00000201295 ENSMUSP00000144104 TRANSLATION protein_coding start/stop - 5 222.0 7.0 4.68 0.0 38.6 2.0 -4,-6 0.0019 1 -2.0 MINOR ENSMUSG00000054252 Fgfr3 ENSMUST00000114411 ENSMUSP00000110053 TRANSLATION protein_coding - - 5 802.0 19.0 15.62 3.6 471.1 2.0 3,-1 0.9081 9 15.0 ALTERNATIVE:2 ENSMUSG00000054252 Fgfr3 ENSMUST00000164207 ENSMUSP00000133064 TRANSLATION protein_coding - CCDS57335.1 1 801.0 19.0 15.62 3.6 466.3 2.0 3,-1 0.9952 10 15.0 PRINCIPAL:3 ENSMUSG00000054252 Fgfr3 ENSMUST00000181298 ENSMUSP00000143963 TRANSLATION protein_coding start/stop - 5 200.0 0.0 5.58 0.0 105.3 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000046985 Tapt1 ENSMUST00000198388 - NO_TRANSLATION retained_intron ENSMUSG00000046985 Tapt1 ENSMUST00000198391 - NO_TRANSLATION retained_intron ENSMUSG00000046985 Tapt1 ENSMUST00000197266 ENSMUSP00000143407 TRANSLATION nonsense_mediated_decay start - 5 87.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000046985 Tapt1 ENSMUST00000199374 ENSMUSP00000143625 TRANSLATION nonsense_mediated_decay - - 5 114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046985 Tapt1 ENSMUST00000055128 ENSMUSP00000062110 TRANSLATION protein_coding - CCDS19270.1 5 564.0 0.0 0.0 3.3 361.1 5.0 -4,-5 1.0 8 7.0 PRINCIPAL:1 ENSMUSG00000046985 Tapt1 ENSMUST00000199265 - NO_TRANSLATION retained_intron ENSMUSG00000046985 Tapt1 ENSMUST00000196151 - NO_TRANSLATION retained_intron ENSMUSG00000046985 Tapt1 ENSMUST00000198348 - NO_TRANSLATION retained_intron ENSMUSG00000050677 Ccdc96 ENSMUST00000060100 ENSMUSP00000059636 TRANSLATION protein_coding - CCDS19239.1 - 584.0 0.0 0.0 0.0 168.3 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000097392 Thoc2l ENSMUST00000181620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000097392 Thoc2l ENSMUST00000196593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000097392 Thoc2l ENSMUST00000239307 ENSMUSP00000159241 TRANSLATION protein_coding - CCDS51580.1 - 1589.0 0.0 0.25 6.5 460.6 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000097392 Thoc2l ENSMUST00000096452 ENSMUSP00000130629 TRANSLATION protein_coding - CCDS51580.1 2 1589.0 0.0 0.25 6.5 460.6 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000097392 Thoc2l ENSMUST00000200034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000097392 Thoc2l ENSMUST00000181418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000097392 Thoc2l ENSMUST00000197606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000097392 Thoc2l ENSMUST00000239420 ENSMUSP00000159295 TRANSLATION protein_coding - CCDS51580.1 - 1589.0 0.0 0.25 6.5 460.6 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000001082 Mfsd10 ENSMUST00000201147 ENSMUSP00000144239 TRANSLATION protein_coding start/stop - 3 130.0 0.0 1.55 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000001082 Mfsd10 ENSMUST00000128670 - NO_TRANSLATION retained_intron ENSMUSG00000001082 Mfsd10 ENSMUST00000136010 - NO_TRANSLATION retained_intron ENSMUSG00000001082 Mfsd10 ENSMUST00000126257 ENSMUSP00000144630 TRANSLATION nonsense_mediated_decay - - 3 140.0 0.0 3.16 0.0 35.3 6.0 -4,-7 0.0042 3 -2.0 MINOR ENSMUSG00000001082 Mfsd10 ENSMUST00000200717 - NO_TRANSLATION retained_intron ENSMUSG00000001082 Mfsd10 ENSMUST00000138212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001082 Mfsd10 ENSMUST00000148270 - NO_TRANSLATION retained_intron ENSMUSG00000001082 Mfsd10 ENSMUST00000151247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001082 Mfsd10 ENSMUST00000001109 ENSMUSP00000001109 TRANSLATION protein_coding - CCDS19217.1 1 456.0 0.0 12.23 2.6 136.1 17.0 -4,-7 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000001082 Mfsd10 ENSMUST00000202378 ENSMUSP00000144117 TRANSLATION nonsense_mediated_decay start - 3 141.0 0.0 3.49 0.0 0.0 5.0 1,-3 0.0074 1 -2.0 MINOR ENSMUSG00000001082 Mfsd10 ENSMUST00000202065 ENSMUSP00000144466 TRANSLATION protein_coding start/stop - 1 45.0 0.0 1.0 0.0 0.0 1.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000001082 Mfsd10 ENSMUST00000134156 ENSMUSP00000143812 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 1.16 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000001082 Mfsd10 ENSMUST00000114331 ENSMUSP00000109970 TRANSLATION protein_coding - CCDS19217.1 1 456.0 0.0 12.23 2.6 136.1 17.0 -4,-7 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000001082 Mfsd10 ENSMUST00000124668 ENSMUSP00000119140 TRANSLATION protein_coding stop - 3 58.0 0.0 1.0 0.0 0.0 3.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000001082 Mfsd10 ENSMUST00000155577 ENSMUSP00000115204 TRANSLATION protein_coding stop - 5 278.0 0.0 7.07 0.0 92.2 10.0 -4,-7 0.0037 5 -2.0 MINOR ENSMUSG00000001082 Mfsd10 ENSMUST00000137150 ENSMUSP00000120814 TRANSLATION nonsense_mediated_decay - - 5 101.0 0.0 2.0 0.0 0.0 3.0 -4,-7 0.0002 3 -2.0 MINOR ENSMUSG00000001082 Mfsd10 ENSMUST00000149657 ENSMUSP00000118786 TRANSLATION protein_coding stop - 5 266.0 0.0 6.74 0.0 92.2 10.0 -4,-7 0.0037 4 -2.0 MINOR ENSMUSG00000001082 Mfsd10 ENSMUST00000137744 - NO_TRANSLATION retained_intron ENSMUSG00000001082 Mfsd10 ENSMUST00000130347 - NO_TRANSLATION retained_intron ENSMUSG00000001082 Mfsd10 ENSMUST00000137506 ENSMUSP00000144121 TRANSLATION protein_coding start/stop - 1 113.0 0.0 1.33 0.0 0.0 4.0 1,-3 0.0066 - -2.0 MINOR ENSMUSG00000001082 Mfsd10 ENSMUST00000114329 ENSMUSP00000109968 TRANSLATION protein_coding - CCDS19217.1 1 456.0 0.0 12.23 2.6 136.1 17.0 -4,-7 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000106627 Gm21680 ENSMUST00000200447 ENSMUSP00000143671 TRANSLATION protein_coding - - 5 267.0 0.0 2.25 0.0 82.9 0.0 -4,-2 0.768 - 12.0 PRINCIPAL:1 ENSMUSG00000029182 Fam166c ENSMUST00000114743 ENSMUSP00000110391 TRANSLATION protein_coding - - 5 155.0 0.0 0.6 0.0 90.7 0.0 -4,-7 0.0251 1 7.356 MINOR ENSMUSG00000029182 Fam166c ENSMUST00000199129 ENSMUSP00000142583 TRANSLATION nonsense_mediated_decay - - 5 116.0 0.0 0.4 0.1 90.7 0.0 -4,-7 0.0453 1 -2.0 MINOR ENSMUSG00000029182 Fam166c ENSMUST00000031078 ENSMUSP00000031078 TRANSLATION protein_coding - CCDS19158.1 1 200.0 0.0 2.65 12.7 90.7 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000029182 Fam166c ENSMUST00000127815 ENSMUSP00000142635 TRANSLATION protein_coding - - 1 117.0 0.0 0.4 0.1 90.7 0.0 -4,-7 0.0453 1 6.906 MINOR ENSMUSG00000048520 Fbxl13 ENSMUST00000115234 ENSMUSP00000110889 TRANSLATION protein_coding - - 5 632.0 0.0 5.52 0.4 48.9 0.0 -4,-2 0.0014 - 8.112 MINOR ENSMUSG00000048520 Fbxl13 ENSMUST00000200168 - NO_TRANSLATION retained_intron ENSMUSG00000048520 Fbxl13 ENSMUST00000051358 ENSMUSP00000052716 TRANSLATION protein_coding - CCDS51429.1 1 790.0 0.0 6.57 0.0 69.7 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048520 Fbxl13 ENSMUST00000153598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048520 Fbxl13 ENSMUST00000137788 - NO_TRANSLATION retained_intron ENSMUSG00000075599 Smok3a ENSMUST00000085886 ENSMUSP00000083049 TRANSLATION protein_coding - CCDS51678.1 1 504.0 18.0 0.5 0.0 243.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000075599 Smok3a ENSMUST00000171498 ENSMUSP00000125938 TRANSLATION protein_coding - CCDS51678.1 1 504.0 18.0 0.5 0.0 243.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000029217 Tec ENSMUST00000150193 - NO_TRANSLATION retained_intron ENSMUSG00000029217 Tec ENSMUST00000155342 ENSMUSP00000118980 TRANSLATION nonsense_mediated_decay start - 2 68.0 5.0 1.0 0.0 53.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029217 Tec ENSMUST00000202547 ENSMUSP00000144458 TRANSLATION protein_coding stop - 3 44.0 12.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029217 Tec ENSMUST00000138842 ENSMUSP00000120155 TRANSLATION nonsense_mediated_decay - - 1 100.0 13.0 1.875 0.0 41.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029217 Tec ENSMUST00000113594 ENSMUSP00000109224 TRANSLATION protein_coding - CCDS51516.1 1 630.0 36.0 12.86 12.4 558.8 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000029217 Tec ENSMUST00000071944 ENSMUSP00000071836 TRANSLATION protein_coding - CCDS51516.1 1 630.0 36.0 12.86 12.4 558.8 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000029217 Tec ENSMUST00000073843 ENSMUSP00000073509 TRANSLATION protein_coding - CCDS51515.1 1 608.0 36.0 12.26 0.0 547.2 0.0 -4,-5 0.1544 6 16.104 MINOR ENSMUSG00000029217 Tec ENSMUST00000126481 ENSMUSP00000123606 TRANSLATION nonsense_mediated_decay - - 5 184.0 18.0 4.0 0.0 118.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029217 Tec ENSMUST00000149533 ENSMUSP00000123258 TRANSLATION nonsense_mediated_decay - - 1 100.0 13.0 1.875 0.0 41.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007080 Pole ENSMUST00000112482 ENSMUSP00000108101 TRANSLATION protein_coding - - 1 193.0 0.0 2.07 0.0 57.1 0.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000007080 Pole ENSMUST00000007296 ENSMUSP00000007296 TRANSLATION protein_coding - CCDS19525.1 1 2283.0 9.0 25.692 10.3 868.1 0.0 -4,-7 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000007080 Pole ENSMUST00000182442 - NO_TRANSLATION retained_intron ENSMUSG00000007080 Pole ENSMUST00000112481 ENSMUSP00000108100 TRANSLATION protein_coding - - 1 407.0 4.0 3.41 0.0 36.6 0.0 -4,-5 0.0 1 2.664 MINOR ENSMUSG00000007080 Pole ENSMUST00000152495 - NO_TRANSLATION retained_intron ENSMUSG00000007080 Pole ENSMUST00000131887 - NO_TRANSLATION retained_intron ENSMUSG00000007080 Pole ENSMUST00000141506 - NO_TRANSLATION retained_intron ENSMUSG00000029378 Areg ENSMUST00000031325 ENSMUSP00000031325 TRANSLATION protein_coding - CCDS19421.1 1 248.0 0.0 1.0 0.0 0.0 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000004814 Ccl24 ENSMUST00000004936 ENSMUSP00000004936 TRANSLATION protein_coding - CCDS19742.1 1 119.0 0.0 2.0 7.6 69.5 0.0 0,-3 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000004814 Ccl24 ENSMUST00000201401 ENSMUSP00000144002 TRANSLATION protein_coding - CCDS19742.1 1 119.0 0.0 2.0 7.6 69.5 0.0 0,-3 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000107180 Gm43638 ENSMUST00000201519 ENSMUSP00000143986 TRANSLATION protein_coding,RT - - 5 694.0 13.0 5.48 0.0 574.1 0.0 1,-2 0.8913 - -2.0 PRINCIPAL:1 ENSMUSG00000008090 Fgfrl1 ENSMUST00000112560 ENSMUSP00000108179 TRANSLATION protein_coding - CCDS51592.1 1 438.0 0.0 1.35 0.0 98.5 1.0 4,-1 0.0527 2 5.844 MINOR ENSMUSG00000008090 Fgfrl1 ENSMUST00000013633 ENSMUSP00000013633 TRANSLATION protein_coding - CCDS19518.1 1 529.0 0.0 2.62 0.1 152.6 1.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000008090 Fgfrl1 ENSMUST00000196222 ENSMUSP00000143037 TRANSLATION protein_coding stop - 3 106.0 0.0 1.315 0.0 55.5 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000008090 Fgfrl1 ENSMUST00000197255 ENSMUSP00000142430 TRANSLATION protein_coding stop - 2 40.0 0.0 0.375 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000008090 Fgfrl1 ENSMUST00000199802 - NO_TRANSLATION retained_intron ENSMUSG00000029557 Mrm2 ENSMUST00000031536 ENSMUSP00000031536 TRANSLATION protein_coding - CCDS39355.1 1 246.0 20.0 2.0 6.2 174.8 0.0 -4,0 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000109572 Cfap99 ENSMUST00000207754 ENSMUSP00000146999 TRANSLATION protein_coding - - 5 648.0 0.0 0.0 2.6 0.0 0.0 -4,-5 0.7378 - 1.0 PRINCIPAL:1 ENSMUSG00000029640 Usp12 ENSMUST00000124009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029640 Usp12 ENSMUST00000085614 ENSMUSP00000082754 TRANSLATION protein_coding - CCDS39395.1 1 370.0 4.0 6.25 33.4 206.3 0.0 -4,-7 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000029640 Usp12 ENSMUST00000138202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029581 Fscn1 ENSMUST00000198017 ENSMUSP00000142509 TRANSLATION protein_coding - - 5 332.0 0.0 6.5 0.0 241.5 0.0 -4,-5 0.0 13 1.338 MINOR ENSMUSG00000029581 Fscn1 ENSMUST00000137552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029581 Fscn1 ENSMUST00000031565 ENSMUSP00000031565 TRANSLATION protein_coding - CCDS19834.1 1 493.0 0.0 8.83 35.8 408.3 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000029581 Fscn1 ENSMUST00000129306 ENSMUSP00000122862 TRANSLATION protein_coding start - 3 241.0 0.0 4.83 0.0 194.5 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000029581 Fscn1 ENSMUST00000150622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029581 Fscn1 ENSMUST00000139131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029581 Fscn1 ENSMUST00000135293 - NO_TRANSLATION retained_intron ENSMUSG00000029375 Cxcl15 ENSMUST00000031322 ENSMUSP00000031322 TRANSLATION protein_coding - CCDS19418.1 1 167.0 0.0 1.4 0.0 49.9 0.0 3,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000049327 Kmt5a ENSMUST00000143722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049327 Kmt5a ENSMUST00000059580 ENSMUSP00000052953 TRANSLATION protein_coding - CCDS19675.1 1 350.0 12.0 3.35 5.7 67.0 0.0 -4,-1 0.7518 5 13.424 PRINCIPAL:3 ENSMUSG00000049327 Kmt5a ENSMUST00000198451 ENSMUSP00000143207 TRANSLATION protein_coding - CCDS80411.1 3 295.0 12.0 3.35 7.6 67.0 0.0 -4,-6 1.0 4 14.0 ALTERNATIVE:1 ENSMUSG00000049327 Kmt5a ENSMUST00000100709 ENSMUSP00000098275 TRANSLATION protein_coding - CCDS80410.1 1 364.0 12.0 3.35 2.3 67.0 0.0 -4,-2 0.43 5 12.394 MINOR ENSMUSG00000049327 Kmt5a ENSMUST00000147692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049327 Kmt5a ENSMUST00000138766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049327 Kmt5a ENSMUST00000154031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049327 Kmt5a ENSMUST00000199798 ENSMUSP00000143765 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049327 Kmt5a ENSMUST00000196860 - NO_TRANSLATION retained_intron ENSMUSG00000049327 Kmt5a ENSMUST00000147969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049327 Kmt5a ENSMUST00000135667 - NO_TRANSLATION retained_intron ENSMUSG00000049327 Kmt5a ENSMUST00000125588 - NO_TRANSLATION retained_intron ENSMUSG00000049327 Kmt5a ENSMUST00000134826 - NO_TRANSLATION retained_intron ENSMUSG00000036403 Cep135 ENSMUST00000130651 - NO_TRANSLATION retained_intron ENSMUSG00000036403 Cep135 ENSMUST00000049060 ENSMUSP00000038674 TRANSLATION protein_coding - CCDS19365.1 1 1140.0 0.0 2.2 11.0 0.0 0.0 -4,-5 1.0 17 9.0 PRINCIPAL:1 ENSMUSG00000036403 Cep135 ENSMUST00000121979 ENSMUSP00000112602 TRANSLATION protein_coding - CCDS19365.1 5 1140.0 0.0 2.2 11.0 0.0 0.0 -4,-5 1.0 17 9.0 PRINCIPAL:1 ENSMUSG00000050856 Atp5me ENSMUST00000123184 - NO_TRANSLATION retained_intron ENSMUSG00000050856 Atp5me ENSMUST00000049628 ENSMUSP00000051222 TRANSLATION protein_coding - CCDS39204.1 1 71.0 0.0 2.33 23.4 65.8 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000050856 Atp5me ENSMUST00000118632 ENSMUSP00000113882 TRANSLATION protein_coding - - 1 38.0 0.0 1.33 0.0 47.6 0.0 -4,-7 0.0 2 7.764 MINOR ENSMUSG00000037210 Fam193a ENSMUST00000094867 ENSMUSP00000092463 TRANSLATION protein_coding - - 5 1231.0 0.0 0.0 0.0 103.4 0.0 -4,0 0.3418 8 2.0 ALTERNATIVE:2 ENSMUSG00000037210 Fam193a ENSMUST00000181379 ENSMUSP00000137979 TRANSLATION protein_coding start - 1 134.0 0.0 0.0 0.0 46.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037210 Fam193a ENSMUST00000201005 ENSMUSP00000143885 TRANSLATION protein_coding start/stop - 5 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037210 Fam193a ENSMUST00000180376 ENSMUSP00000138082 TRANSLATION protein_coding - - 5 1517.0 0.0 0.0 0.1 103.4 0.0 -4,-5 0.9085 12 2.0 PRINCIPAL:2 ENSMUSG00000037210 Fam193a ENSMUST00000202503 ENSMUSP00000143922 TRANSLATION protein_coding start/stop - 3 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000054814 Usp46 ENSMUST00000119154 ENSMUSP00000114060 TRANSLATION protein_coding - - 5 339.0 4.0 6.17 0.0 193.2 0.0 -4,-7 0.0106 3 13.918 MINOR ENSMUSG00000054814 Usp46 ENSMUST00000152408 ENSMUSP00000144284 TRANSLATION protein_coding start - 3 145.0 2.0 0.82 0.0 33.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054814 Usp46 ENSMUST00000068058 ENSMUSP00000070554 TRANSLATION protein_coding - CCDS39112.1 1 366.0 4.0 6.92 29.7 202.9 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000054814 Usp46 ENSMUST00000150009 - NO_TRANSLATION retained_intron ENSMUSG00000054814 Usp46 ENSMUST00000128750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054814 Usp46 ENSMUST00000145016 ENSMUSP00000114395 TRANSLATION protein_coding stop - 3 121.0 0.0 2.25 0.0 91.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029348 Asphd2 ENSMUST00000197585 ENSMUSP00000142418 TRANSLATION protein_coding stop - 2 51.0 0.0 0.0 0.0 0.0 1.0 -3,-5 0.0007 1 -2.0 MINOR ENSMUSG00000029348 Asphd2 ENSMUST00000198357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029348 Asphd2 ENSMUST00000196256 ENSMUSP00000143290 TRANSLATION protein_coding stop - 2 92.0 0.0 0.0 0.0 0.0 1.0 -3,-5 0.0007 1 -2.0 MINOR ENSMUSG00000029348 Asphd2 ENSMUST00000031291 ENSMUSP00000031291 TRANSLATION protein_coding - CCDS19542.1 1 343.0 0.0 1.5 9.4 166.8 1.0 -3,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000029348 Asphd2 ENSMUST00000199906 ENSMUSP00000142332 TRANSLATION protein_coding stop - 2 63.0 0.0 0.0 0.0 0.0 1.0 -3,-6 0.0007 1 -2.0 MINOR ENSMUSG00000029348 Asphd2 ENSMUST00000199095 ENSMUSP00000142842 TRANSLATION protein_coding stop - 3 28.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000029348 Asphd2 ENSMUST00000200227 ENSMUSP00000142729 TRANSLATION protein_coding stop - 3 155.0 0.0 0.0 0.0 0.0 1.0 -3,-5 0.0023 2 -2.0 MINOR ENSMUSG00000040302 Rbm48 ENSMUST00000121877 ENSMUSP00000112547 TRANSLATION protein_coding - - 1 101.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0031 - 3.6 MINOR ENSMUSG00000040302 Rbm48 ENSMUST00000042753 ENSMUSP00000040952 TRANSLATION protein_coding - - 1 371.0 0.0 2.5 5.7 0.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000040302 Rbm48 ENSMUST00000124162 - NO_TRANSLATION retained_intron ENSMUSG00000040302 Rbm48 ENSMUST00000135809 - NO_TRANSLATION retained_intron ENSMUSG00000040302 Rbm48 ENSMUST00000176000 ENSMUSP00000135709 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0051 - -2.0 MINOR ENSMUSG00000029370 Rassf6 ENSMUST00000202784 ENSMUSP00000144337 TRANSLATION protein_coding - CCDS80327.1 1 328.0 0.0 0.0 0.0 84.2 0.0 -4,-5 0.1657 2 6.0 MINOR ENSMUSG00000029370 Rassf6 ENSMUST00000201121 ENSMUSP00000144586 TRANSLATION nonsense_mediated_decay - - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029370 Rassf6 ENSMUST00000202704 ENSMUSP00000144532 TRANSLATION protein_coding - CCDS39142.1 5 341.0 0.0 0.0 8.7 84.2 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000029370 Rassf6 ENSMUST00000201436 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029370 Rassf6 ENSMUST00000202807 ENSMUSP00000144027 TRANSLATION nonsense_mediated_decay start - 3 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029370 Rassf6 ENSMUST00000031317 ENSMUSP00000031317 TRANSLATION protein_coding - CCDS39142.1 5 341.0 0.0 0.0 8.7 84.2 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000029370 Rassf6 ENSMUST00000201370 ENSMUSP00000144199 TRANSLATION protein_coding stop - 3 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004821 Tmed11 ENSMUST00000004943 ENSMUSP00000004943 TRANSLATION protein_coding - CCDS19519.1 1 215.0 0.0 3.88 9.8 149.8 0.0 2,-3 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000096035 Odaph ENSMUST00000201568 - NO_TRANSLATION retained_intron ENSMUSG00000096035 Odaph ENSMUST00000178614 ENSMUSP00000136951 TRANSLATION protein_coding - CCDS57356.1 1 126.0 0.0 0.0 0.7 137.3 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043279 Trim56 ENSMUST00000152207 ENSMUSP00000117874 TRANSLATION protein_coding stop - 3 212.0 12.0 0.5 0.0 70.0 0.0 -4,-6 0.0771 6 -2.0 MINOR ENSMUSG00000043279 Trim56 ENSMUST00000054384 ENSMUSP00000058109 TRANSLATION protein_coding - CCDS19762.1 1 734.0 12.0 0.4 1.1 70.0 0.0 -4,-6 0.9874 14 17.8 PRINCIPAL:1 ENSMUSG00000029338 Antxr2 ENSMUST00000199088 ENSMUSP00000142605 TRANSLATION protein_coding - - 1 517.0 5.0 8.85 0.0 323.0 1.0 1,-4 0.055 8 16.052 MINOR ENSMUSG00000029338 Antxr2 ENSMUST00000202736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029338 Antxr2 ENSMUST00000031281 ENSMUSP00000031281 TRANSLATION protein_coding - CCDS39177.1 1 487.0 5.0 8.85 8.5 338.8 1.0 1,-4 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000096044 Pramel33 ENSMUST00000201432 ENSMUSP00000144252 TRANSLATION protein_coding - - 1 481.0 0.0 2.2 0.4 0.0 0.0 -4,-7 0.6587 - 6.0 PRINCIPAL:1 ENSMUSG00000096044 Pramel33 ENSMUST00000200745 ENSMUSP00000143929 TRANSLATION protein_coding - - 2 481.0 0.0 2.2 0.4 0.0 0.0 -4,-7 0.6587 - 6.0 PRINCIPAL:1 ENSMUSG00000029279 Brdt ENSMUST00000112677 ENSMUSP00000108297 TRANSLATION protein_coding - CCDS39197.1 1 326.0 0.0 4.0 0.1 95.0 0.0 -4,-7 0.0068 - 3.0 MINOR ENSMUSG00000029279 Brdt ENSMUST00000031215 ENSMUSP00000031215 TRANSLATION protein_coding - CCDS19500.1 1 956.0 0.0 5.5 0.0 316.8 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000029279 Brdt ENSMUST00000162804 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029279 Brdt ENSMUST00000161377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050640 Tmem150c ENSMUST00000124145 - NO_TRANSLATION retained_intron ENSMUSG00000050640 Tmem150c ENSMUST00000139520 ENSMUSP00000114464 TRANSLATION protein_coding stop - 2 121.0 0.0 3.33 0.1 76.5 3.0 -1,-5 0.0015 - -2.0 MINOR ENSMUSG00000050640 Tmem150c ENSMUST00000165548 - NO_TRANSLATION retained_intron ENSMUSG00000050640 Tmem150c ENSMUST00000063192 ENSMUSP00000057116 TRANSLATION protein_coding - CCDS19461.1 1 249.0 0.0 5.13 29.7 146.5 6.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000050640 Tmem150c ENSMUST00000146731 - NO_TRANSLATION retained_intron ENSMUSG00000029311 Hsd17b11 ENSMUST00000031251 ENSMUSP00000031251 TRANSLATION protein_coding - CCDS19481.1 1 298.0 27.0 6.75 12.3 170.3 0.0 0,-4 1.0 10 20.94 PRINCIPAL:1 ENSMUSG00000029311 Hsd17b11 ENSMUST00000119025 ENSMUSP00000113455 TRANSLATION protein_coding - - 1 232.0 27.0 5.0 0.0 171.3 0.0 0,-4 0.026 7 14.502 MINOR ENSMUSG00000029135 Fosl2 ENSMUST00000202169 - NO_TRANSLATION retained_intron ENSMUSG00000029135 Fosl2 ENSMUST00000201110 - NO_TRANSLATION retained_intron ENSMUSG00000029135 Fosl2 ENSMUST00000031017 ENSMUSP00000031017 TRANSLATION protein_coding - CCDS19190.1 1 326.0 0.0 1.5 19.4 35.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000109771 Gm35315 ENSMUST00000211397 ENSMUSP00000147992 TRANSLATION protein_coding - - 3 539.0 64.0 1.0 0.0 340.8 0.0 -4,-5 0.144 - 13.602 MINOR ENSMUSG00000109771 Gm35315 ENSMUST00000210052 ENSMUSP00000147534 TRANSLATION protein_coding - - 5 571.0 64.0 1.0 0.1 414.1 0.0 -4,-5 0.8416 - 18.0 PRINCIPAL:1 ENSMUSG00000109771 Gm35315 ENSMUST00000209865 - NO_TRANSLATION retained_intron ENSMUSG00000109771 Gm35315 ENSMUST00000249316 ENSMUSP00000159690 TRANSLATION protein_coding - - - 539.0 64.0 1.0 0.0 340.8 0.0 -4,-5 0.144 - 13.602 MINOR ENSMUSG00000056602 Fry ENSMUST00000201628 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000202841 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000201634 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000200964 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000200863 ENSMUSP00000143845 TRANSLATION protein_coding start - 1 653.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0043 5 -2.0 MINOR ENSMUSG00000056602 Fry ENSMUST00000202571 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000202566 ENSMUSP00000144657 TRANSLATION protein_coding start - 5 1016.0 0.0 0.0 0.0 243.3 0.0 -4,-2 0.0074 13 -2.0 MINOR ENSMUSG00000056602 Fry ENSMUST00000200960 ENSMUSP00000144674 TRANSLATION protein_coding stop - 3 89.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000056602 Fry ENSMUST00000203000 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000201196 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000202600 ENSMUSP00000144317 TRANSLATION protein_coding stop - 3 175.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000056602 Fry ENSMUST00000200750 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000202630 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000202530 ENSMUSP00000144277 TRANSLATION protein_coding stop - 3 159.0 0.0 0.0 0.0 30.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000056602 Fry ENSMUST00000202070 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000201854 - NO_TRANSLATION retained_intron ENSMUSG00000056602 Fry ENSMUST00000239118 ENSMUSP00000158877 TRANSLATION protein_coding - - - 3017.0 0.0 0.0 0.0 799.2 0.0 -4,-7 0.5657 45 6.0 MINOR ENSMUSG00000056602 Fry ENSMUST00000087204 ENSMUSP00000084454 TRANSLATION protein_coding - CCDS51708.1 5 3020.0 0.0 0.0 6.9 799.2 0.0 -4,-5 1.0 45 8.0 PRINCIPAL:1 ENSMUSG00000029559 2210016L21Rik ENSMUST00000131771 ENSMUSP00000114697 TRANSLATION nonsense_mediated_decay start - 3 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0216 - -2.0 MINOR ENSMUSG00000029559 2210016L21Rik ENSMUST00000147743 - NO_TRANSLATION retained_intron ENSMUSG00000029559 2210016L21Rik ENSMUST00000131427 ENSMUSP00000135781 TRANSLATION nonsense_mediated_decay start - 3 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 2 -2.0 MINOR ENSMUSG00000029559 2210016L21Rik ENSMUST00000031538 ENSMUSP00000031538 TRANSLATION protein_coding - CCDS19576.1 1 256.0 0.0 0.0 1.0 0.0 0.0 -4,-5 0.9356 10 0.0 PRINCIPAL:1 ENSMUSG00000029559 2210016L21Rik ENSMUST00000140090 - NO_TRANSLATION retained_intron ENSMUSG00000037379 Spon2 ENSMUST00000046186 ENSMUSP00000042701 TRANSLATION protein_coding - CCDS19200.1 1 330.0 3.0 5.198 1.8 276.2 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000037379 Spon2 ENSMUST00000201199 - NO_TRANSLATION retained_intron ENSMUSG00000037379 Spon2 ENSMUST00000201175 - NO_TRANSLATION retained_intron ENSMUSG00000037379 Spon2 ENSMUST00000200884 - NO_TRANSLATION retained_intron ENSMUSG00000037379 Spon2 ENSMUST00000201475 ENSMUSP00000144416 TRANSLATION protein_coding stop - 3 179.0 1.0 3.0 0.0 169.5 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000042010 Acacb ENSMUST00000102582 ENSMUSP00000099642 TRANSLATION protein_coding - CCDS19561.1 5 2448.0 40.0 44.865 0.0 1956.6 0.0 1,-2 1.0 53 18.0 PRINCIPAL:1 ENSMUSG00000042010 Acacb ENSMUST00000142489 - NO_TRANSLATION retained_intron ENSMUSG00000042010 Acacb ENSMUST00000143276 - NO_TRANSLATION retained_intron ENSMUSG00000042010 Acacb ENSMUST00000031583 ENSMUSP00000031583 TRANSLATION protein_coding - CCDS19561.1 1 2448.0 40.0 44.865 0.0 1956.6 0.0 1,-2 1.0 53 18.0 PRINCIPAL:1 ENSMUSG00000042010 Acacb ENSMUST00000146841 ENSMUSP00000115432 TRANSLATION protein_coding stop - 5 146.0 0.0 3.0 0.0 67.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029175 Slc35f6 ENSMUST00000131978 - NO_TRANSLATION retained_intron ENSMUSG00000029175 Slc35f6 ENSMUST00000199052 ENSMUSP00000142850 TRANSLATION protein_coding start - 5 40.0 0.0 1.0 0.0 0.0 1.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029175 Slc35f6 ENSMUST00000062962 ENSMUSP00000058680 TRANSLATION protein_coding - CCDS19161.1 1 372.0 0.0 6.0 22.4 42.3 9.0 2,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000029175 Slc35f6 ENSMUST00000198025 - NO_TRANSLATION retained_intron ENSMUSG00000029175 Slc35f6 ENSMUST00000124474 ENSMUSP00000120986 TRANSLATION nonsense_mediated_decay - - 5 51.0 0.0 1.5 0.0 0.0 0.0 2,-2 0.0016 1 -2.0 MINOR ENSMUSG00000029175 Slc35f6 ENSMUST00000196740 ENSMUSP00000142761 TRANSLATION protein_coding - - 5 319.0 0.0 4.5 1.1 42.3 8.0 -3,-5 0.1235 2 9.02 MINOR ENSMUSG00000029175 Slc35f6 ENSMUST00000143867 ENSMUSP00000122703 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.75 0.0 0.0 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000055302 Mrfap1 ENSMUST00000068795 ENSMUSP00000067135 TRANSLATION protein_coding - CCDS19242.1 1 125.0 0.0 0.0 6.4 156.6 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000029371 Cxcl5 ENSMUST00000031318 ENSMUSP00000031318 TRANSLATION protein_coding - CCDS19414.1 2 132.0 0.0 2.25 0.1 48.0 0.0 1,2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000029371 Cxcl5 ENSMUST00000202380 - NO_TRANSLATION retained_intron ENSMUSG00000029420 Rimbp2 ENSMUST00000196569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029420 Rimbp2 ENSMUST00000200470 ENSMUSP00000143099 TRANSLATION protein_coding - CCDS80415.1 1 1071.0 0.0 8.8 0.4 119.6 0.0 -4,-5 0.5687 16 8.0 ALTERNATIVE:2 ENSMUSG00000029420 Rimbp2 ENSMUST00000198941 ENSMUSP00000142455 TRANSLATION protein_coding - CCDS39288.1 2 1079.0 0.0 8.8 2.4 119.6 0.0 -4,-5 1.0 15 9.0 PRINCIPAL:2 ENSMUSG00000029420 Rimbp2 ENSMUST00000199537 ENSMUSP00000143276 TRANSLATION protein_coding - - 1 1069.0 0.0 8.8 0.0 119.6 0.0 -4,-5 0.2635 16 8.0 ALTERNATIVE:2 ENSMUSG00000029420 Rimbp2 ENSMUST00000238334 ENSMUSP00000158659 TRANSLATION protein_coding - - - 1291.0 0.0 8.8 0.0 119.6 0.0 -4,-5 0.2533 17 8.0 ALTERNATIVE:2 ENSMUSG00000029420 Rimbp2 ENSMUST00000111346 ENSMUSP00000106978 TRANSLATION protein_coding - CCDS39288.1 5 1079.0 0.0 8.8 2.4 119.6 0.0 -4,-5 1.0 15 9.0 PRINCIPAL:2 ENSMUSG00000029420 Rimbp2 ENSMUST00000196085 ENSMUSP00000143725 TRANSLATION protein_coding - - 5 1004.0 0.0 8.8 0.0 119.6 0.0 -4,-5 0.1813 14 8.0 ALTERNATIVE:2 ENSMUSG00000029420 Rimbp2 ENSMUST00000199737 ENSMUSP00000142712 TRANSLATION protein_coding stop - 3 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029420 Rimbp2 ENSMUST00000239036 ENSMUSP00000159134 TRANSLATION protein_coding start - - 76.0 0.0 0.3 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000045318 Adra2c ENSMUST00000049545 ENSMUSP00000059705 TRANSLATION protein_coding - CCDS19226.1 - 458.0 0.0 0.8 0.1 240.2 0.0 -1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041132 N4bp2l1 ENSMUST00000200840 ENSMUSP00000144439 TRANSLATION nonsense_mediated_decay - - 1 63.0 10.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041132 N4bp2l1 ENSMUST00000202291 ENSMUSP00000144151 TRANSLATION protein_coding stop - 3 51.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041132 N4bp2l1 ENSMUST00000201319 ENSMUSP00000144635 TRANSLATION nonsense_mediated_decay - - 1 58.0 10.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041132 N4bp2l1 ENSMUST00000016279 ENSMUSP00000016279 TRANSLATION protein_coding - CCDS19887.1 1 238.0 12.0 3.9 6.0 63.0 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000041132 N4bp2l1 ENSMUST00000200926 - NO_TRANSLATION retained_intron ENSMUSG00000041132 N4bp2l1 ENSMUST00000202031 ENSMUSP00000144164 TRANSLATION protein_coding - - 1 134.0 1.0 2.3 0.0 0.0 0.0 -4,-5 0.0191 3 2.802 MINOR ENSMUSG00000041132 N4bp2l1 ENSMUST00000202279 ENSMUSP00000143792 TRANSLATION nonsense_mediated_decay - - 3 60.0 10.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029469 Ift81 ENSMUST00000139447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029469 Ift81 ENSMUST00000136024 ENSMUSP00000118614 TRANSLATION nonsense_mediated_decay - - 3 59.0 0.0 0.866 0.0 0.0 0.0 -4,-5 0.0027 1 -2.0 MINOR ENSMUSG00000029469 Ift81 ENSMUST00000127220 ENSMUSP00000116467 TRANSLATION protein_coding stop - 5 217.0 0.0 3.555 0.0 0.0 0.0 -4,-5 0.0051 4 -2.0 MINOR ENSMUSG00000029469 Ift81 ENSMUST00000139590 ENSMUSP00000143167 TRANSLATION protein_coding start/stop - 5 198.0 0.0 2.085 0.0 0.0 0.0 -4,-5 0.0029 1 -2.0 MINOR ENSMUSG00000029469 Ift81 ENSMUST00000196452 ENSMUSP00000143512 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0032 1 -2.0 MINOR ENSMUSG00000029469 Ift81 ENSMUST00000144065 - NO_TRANSLATION retained_intron ENSMUSG00000029469 Ift81 ENSMUST00000135956 - NO_TRANSLATION retained_intron ENSMUSG00000029469 Ift81 ENSMUST00000196544 - NO_TRANSLATION retained_intron ENSMUSG00000029469 Ift81 ENSMUST00000031426 ENSMUSP00000031426 TRANSLATION protein_coding - CCDS19650.1 1 676.0 0.0 5.48 31.4 0.0 0.0 -4,-5 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000040367 Lrrd1 ENSMUST00000044039 ENSMUSP00000038675 TRANSLATION protein_coding - CCDS19068.1 1 853.0 0.0 4.0 0.4 132.1 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000040367 Lrrd1 ENSMUST00000143027 ENSMUSP00000122668 TRANSLATION protein_coding stop - 5 164.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007907 Cabs1 ENSMUST00000008051 ENSMUSP00000008051 TRANSLATION protein_coding - CCDS39136.1 1 391.0 0.0 0.0 4.1 626.3 0.0 -4,-5 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000054116 E130116L18Rik ENSMUST00000066954 ENSMUSP00000068775 TRANSLATION protein_coding start - - 101.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.5854 - -2.0 PRINCIPAL:1 ENSMUSG00000066613 Zfp932 ENSMUST00000112540 ENSMUSP00000108159 TRANSLATION protein_coding - CCDS59681.1 1 526.0 60.0 3.8 0.3 384.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000066613 Zfp932 ENSMUST00000099484 ENSMUSP00000097083 TRANSLATION protein_coding - - 1 65.0 0.0 2.25 0.4 79.9 0.0 -4,-5 0.0 - 2.898 MINOR ENSMUSG00000066613 Zfp932 ENSMUST00000112536 - NO_TRANSLATION retained_intron ENSMUSG00000066613 Zfp932 ENSMUST00000125213 ENSMUSP00000119843 TRANSLATION protein_coding - - 2 493.0 60.0 2.8 0.0 305.0 0.0 -4,-5 0.0616 - 11.208 MINOR ENSMUSG00000066613 Zfp932 ENSMUST00000142180 - NO_TRANSLATION retained_intron ENSMUSG00000066613 Zfp932 ENSMUST00000143639 ENSMUSP00000121749 TRANSLATION protein_coding stop - 5 221.0 16.0 2.8 0.0 147.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066613 Zfp932 ENSMUST00000187241 ENSMUSP00000140446 TRANSLATION protein_coding - CCDS59681.1 5 526.0 60.0 3.8 0.3 384.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000040576 Tmem270 ENSMUST00000047305 ENSMUSP00000045190 TRANSLATION protein_coding - CCDS39313.1 1 209.0 0.0 0.0 0.0 244.2 3.0 -1,1 0.0408 - 0.0 MINOR ENSMUSG00000040576 Tmem270 ENSMUST00000201316 ENSMUSP00000144496 TRANSLATION protein_coding - CCDS80423.1 1 264.0 0.0 0.6 2.1 399.4 3.0 -1,1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075593 Gal3st4 ENSMUST00000161665 ENSMUSP00000124682 TRANSLATION protein_coding stop - 3 68.0 0.0 0.0 0.0 0.0 2.0 -3,-2 0.0002 - -2.0 MINOR ENSMUSG00000075593 Gal3st4 ENSMUST00000161279 ENSMUSP00000124841 TRANSLATION protein_coding - CCDS19798.1 3 480.0 0.0 0.52 1.9 362.5 2.0 -3,-2 1.0 4 7.0 PRINCIPAL:2 ENSMUSG00000075593 Gal3st4 ENSMUST00000162557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075593 Gal3st4 ENSMUST00000161647 ENSMUSP00000125084 TRANSLATION protein_coding - CCDS84982.1 1 475.0 0.0 0.52 0.4 362.5 2.0 -1,-7 0.5543 4 6.0 ALTERNATIVE:2 ENSMUSG00000075593 Gal3st4 ENSMUST00000100530 ENSMUSP00000098099 TRANSLATION protein_coding - CCDS19798.1 1 480.0 0.0 0.52 1.9 362.5 2.0 -3,-2 1.0 4 7.0 PRINCIPAL:2 ENSMUSG00000029454 Mapkapk5 ENSMUST00000111781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029454 Mapkapk5 ENSMUST00000031410 ENSMUSP00000031410 TRANSLATION protein_coding - CCDS39248.1 1 473.0 21.0 7.293 20.4 209.4 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:3 ENSMUSG00000029454 Mapkapk5 ENSMUST00000153763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029454 Mapkapk5 ENSMUST00000128782 - NO_TRANSLATION retained_intron ENSMUSG00000029454 Mapkapk5 ENSMUST00000131914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029454 Mapkapk5 ENSMUST00000111783 ENSMUSP00000107413 TRANSLATION protein_coding - - 1 471.0 21.0 7.293 20.4 209.4 0.0 -4,-5 0.8917 4 16.0 ALTERNATIVE:1 ENSMUSG00000029454 Mapkapk5 ENSMUST00000111786 ENSMUSP00000107416 TRANSLATION protein_coding - - 1 324.0 1.0 3.823 0.1 90.9 0.0 -4,-5 0.0003 3 0.0 MINOR ENSMUSG00000029454 Mapkapk5 ENSMUST00000151352 ENSMUSP00000143489 TRANSLATION nonsense_mediated_decay start - 5 63.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000029454 Mapkapk5 ENSMUST00000111782 ENSMUSP00000107412 TRANSLATION protein_coding - - 1 322.0 1.0 3.823 0.1 90.9 0.0 -4,-5 0.001 2 0.0 MINOR ENSMUSG00000029454 Mapkapk5 ENSMUST00000152270 ENSMUSP00000116464 TRANSLATION protein_coding start - 3 114.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029454 Mapkapk5 ENSMUST00000154628 - NO_TRANSLATION retained_intron ENSMUSG00000029454 Mapkapk5 ENSMUST00000126524 - NO_TRANSLATION retained_intron ENSMUSG00000029454 Mapkapk5 ENSMUST00000196315 ENSMUSP00000142346 TRANSLATION protein_coding stop - 3 187.0 18.0 3.62 0.0 59.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036087 Slain2 ENSMUST00000144843 ENSMUSP00000116528 TRANSLATION protein_coding - CCDS51517.1 1 581.0 0.0 0.0 9.2 559.7 0.0 -4,-5 1.0 13 4.763 PRINCIPAL:1 ENSMUSG00000036087 Slain2 ENSMUST00000183284 - NO_TRANSLATION retained_intron ENSMUSG00000036087 Slain2 ENSMUST00000143829 ENSMUSP00000115871 TRANSLATION protein_coding - CCDS19335.2 5 607.0 0.0 0.0 9.9 544.8 0.0 -4,-5 0.9236 13 3.0 MINOR ENSMUSG00000036087 Slain2 ENSMUST00000145939 - NO_TRANSLATION retained_intron ENSMUSG00000036087 Slain2 ENSMUST00000200785 ENSMUSP00000144204 TRANSLATION protein_coding stop - 5 188.0 0.0 0.0 0.0 261.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029524 Sirt4 ENSMUST00000154729 - NO_TRANSLATION retained_intron ENSMUSG00000029524 Sirt4 ENSMUST00000148139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029524 Sirt4 ENSMUST00000112067 ENSMUSP00000107698 TRANSLATION protein_coding - CCDS51628.1 1 333.0 26.0 3.0 0.0 183.1 0.0 -4,0 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000029524 Sirt4 ENSMUST00000112066 ENSMUSP00000107697 TRANSLATION protein_coding - CCDS51628.1 1 333.0 26.0 3.0 0.0 183.1 0.0 -4,0 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000029524 Sirt4 ENSMUST00000127479 - NO_TRANSLATION retained_intron ENSMUSG00000029524 Sirt4 ENSMUST00000131121 - NO_TRANSLATION retained_intron ENSMUSG00000055235 Wdr86 ENSMUST00000068693 ENSMUSP00000064785 TRANSLATION protein_coding - CCDS39031.1 2 380.0 0.0 6.35 6.2 138.7 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000055235 Wdr86 ENSMUST00000127320 ENSMUSP00000119649 TRANSLATION protein_coding start/stop - 5 122.0 0.0 2.8 0.0 26.6 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000055235 Wdr86 ENSMUST00000196443 - NO_TRANSLATION retained_intron ENSMUSG00000055235 Wdr86 ENSMUST00000142607 - NO_TRANSLATION retained_intron ENSMUSG00000029388 Eif2b1 ENSMUST00000128920 ENSMUSP00000118760 TRANSLATION protein_coding stop - 3 133.0 0.0 2.75 0.0 37.9 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000029388 Eif2b1 ENSMUST00000031334 ENSMUSP00000031334 TRANSLATION protein_coding - CCDS39282.1 1 305.0 0.0 7.58 36.9 263.9 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000029388 Eif2b1 ENSMUST00000135361 ENSMUSP00000122923 TRANSLATION protein_coding stop - 2 185.0 0.0 4.43 0.0 99.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000029388 Eif2b1 ENSMUST00000198318 ENSMUSP00000142748 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029388 Eif2b1 ENSMUST00000152716 - NO_TRANSLATION retained_intron ENSMUSG00000029388 Eif2b1 ENSMUST00000135163 ENSMUSP00000120745 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036968 Cnpy4 ENSMUST00000110934 ENSMUSP00000106559 TRANSLATION protein_coding - CCDS39341.1 1 245.0 0.0 4.95 0.0 165.8 0.0 1,-3 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000036968 Cnpy4 ENSMUST00000130126 - NO_TRANSLATION retained_intron ENSMUSG00000036968 Cnpy4 ENSMUST00000110932 ENSMUSP00000106557 TRANSLATION protein_coding stop - 3 160.0 0.0 3.5 0.0 131.7 0.0 -1,-4 0.0 7 -2.0 MINOR ENSMUSG00000052271 Bhlha15 ENSMUST00000060747 ENSMUSP00000055493 TRANSLATION protein_coding - CCDS19847.1 1 197.0 0.0 0.6 1.8 61.9 0.0 -4,-6 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000029273 Sult1d1 ENSMUST00000166996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029273 Sult1d1 ENSMUST00000113314 ENSMUSP00000108940 TRANSLATION protein_coding - CCDS39130.1 1 295.0 19.0 7.0 15.5 310.2 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000029260 Ugt2b34 ENSMUST00000031181 ENSMUSP00000031181 TRANSLATION protein_coding - CCDS19381.1 1 532.0 15.0 6.0 5.6 833.8 0.0 2,-2 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000029260 Ugt2b34 ENSMUST00000113333 ENSMUSP00000108959 TRANSLATION protein_coding - - 1 440.0 15.0 5.0 0.1 635.6 0.0 2,-2 0.0137 7 10.002 MINOR ENSMUSG00000029713 Gnb2 ENSMUST00000150063 ENSMUSP00000129353 TRANSLATION protein_coding - CCDS19769.1 1 340.0 0.0 8.83 36.9 160.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029713 Gnb2 ENSMUST00000111027 ENSMUSP00000106656 TRANSLATION protein_coding - - 5 382.0 0.0 8.83 0.0 160.0 0.0 -4,-2 0.0548 5 12.0 MINOR ENSMUSG00000029713 Gnb2 ENSMUST00000167225 - NO_TRANSLATION retained_intron ENSMUSG00000029713 Gnb2 ENSMUST00000031726 ENSMUSP00000031726 TRANSLATION protein_coding - CCDS19769.1 1 340.0 0.0 8.83 36.9 160.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029713 Gnb2 ENSMUST00000144667 - NO_TRANSLATION retained_intron ENSMUSG00000029713 Gnb2 ENSMUST00000170293 ENSMUSP00000128038 TRANSLATION protein_coding - - 5 296.0 0.0 7.33 0.7 160.0 0.0 -4,-1 0.0673 3 9.0 MINOR ENSMUSG00000029713 Gnb2 ENSMUST00000111023 ENSMUSP00000106652 TRANSLATION protein_coding - - 5 296.0 0.0 7.33 0.7 160.0 0.0 -4,-1 0.0673 3 9.0 MINOR ENSMUSG00000029713 Gnb2 ENSMUST00000111020 ENSMUSP00000106649 TRANSLATION protein_coding - - 5 296.0 0.0 7.33 0.7 160.0 0.0 -4,-1 0.0673 3 9.0 MINOR ENSMUSG00000029713 Gnb2 ENSMUST00000132525 ENSMUSP00000119725 TRANSLATION protein_coding stop - 3 227.0 0.0 6.83 0.0 84.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029713 Gnb2 ENSMUST00000168746 ENSMUSP00000132908 TRANSLATION protein_coding - - 5 240.0 0.0 5.5 1.0 120.6 0.0 -4,-5 0.0445 3 3.636 MINOR ENSMUSG00000029713 Gnb2 ENSMUST00000143495 ENSMUSP00000126823 TRANSLATION protein_coding - - 5 240.0 0.0 5.5 1.0 120.6 0.0 -4,-5 0.0445 3 3.636 MINOR ENSMUSG00000029713 Gnb2 ENSMUST00000145238 - NO_TRANSLATION retained_intron ENSMUSG00000029713 Gnb2 ENSMUST00000142252 - NO_TRANSLATION retained_intron ENSMUSG00000029713 Gnb2 ENSMUST00000125868 - NO_TRANSLATION retained_intron ENSMUSG00000029713 Gnb2 ENSMUST00000140139 ENSMUSP00000121942 TRANSLATION protein_coding stop - 5 188.0 0.0 5.83 0.0 60.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036526 Card11 ENSMUST00000196169 - NO_TRANSLATION retained_intron ENSMUSG00000036526 Card11 ENSMUST00000085786 ENSMUSP00000082941 TRANSLATION protein_coding - CCDS51686.1 1 1154.0 0.0 3.315 8.3 75.2 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000036526 Card11 ENSMUST00000199091 - NO_TRANSLATION retained_intron ENSMUSG00000053765 Oas1f ENSMUST00000123431 ENSMUSP00000114589 TRANSLATION nonsense_mediated_decay start - 2 30.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053765 Oas1f ENSMUST00000057814 ENSMUSP00000056993 TRANSLATION protein_coding - CCDS19628.1 1 364.0 1.0 5.25 0.1 262.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000010825 Grid2ip ENSMUST00000196148 - NO_TRANSLATION retained_intron ENSMUSG00000010825 Grid2ip ENSMUST00000120825 ENSMUSP00000113443 TRANSLATION protein_coding - CCDS84992.1 5 1031.0 0.0 5.861 4.0 366.7 0.0 -4,-7 0.408 9 10.58 MINOR ENSMUSG00000010825 Grid2ip ENSMUST00000138948 - NO_TRANSLATION retained_intron ENSMUSG00000010825 Grid2ip ENSMUST00000010969 ENSMUSP00000010969 TRANSLATION protein_coding - CCDS19841.1 1 1024.0 0.0 5.861 3.2 366.7 0.0 -4,-7 0.3849 9 10.046 MINOR ENSMUSG00000010825 Grid2ip ENSMUST00000110733 ENSMUSP00000106361 TRANSLATION protein_coding - CCDS51689.1 1 1203.0 0.0 6.561 3.1 400.4 0.0 -4,-5 1.0 9 13.4 PRINCIPAL:1 ENSMUSG00000006143 Upk3bl ENSMUST00000122979 ENSMUSP00000122206 TRANSLATION nonsense_mediated_decay start - 3 119.0 0.0 0.925 0.0 0.0 3.0 -4,-7 0.0426 1 -2.0 MINOR ENSMUSG00000006143 Upk3bl ENSMUST00000139549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006143 Upk3bl ENSMUST00000156530 ENSMUSP00000123311 TRANSLATION protein_coding start - 1 295.0 0.0 1.225 0.0 0.0 3.0 -4,-5 0.1321 2 -2.0 MINOR ENSMUSG00000006143 Upk3bl ENSMUST00000111137 ENSMUSP00000106767 TRANSLATION protein_coding - - 1 314.0 0.0 1.225 0.0 0.0 3.0 -4,-5 0.6914 2 6.0 PRINCIPAL:4 ENSMUSG00000006143 Upk3bl ENSMUST00000006303 ENSMUSP00000006303 TRANSLATION protein_coding - CCDS51665.1 1 250.0 0.0 1.225 0.4 0.0 3.0 2,-2 0.6036 2 6.0 ALTERNATIVE:2 ENSMUSG00000006143 Upk3bl ENSMUST00000139999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000148 Brat1 ENSMUST00000131905 - NO_TRANSLATION retained_intron ENSMUSG00000000148 Brat1 ENSMUST00000124892 - NO_TRANSLATION retained_intron ENSMUSG00000000148 Brat1 ENSMUST00000100505 ENSMUSP00000098074 TRANSLATION protein_coding - CCDS71696.1 1 867.0 0.0 0.0 0.0 21.9 0.0 -4,-7 0.2344 12 6.0 MINOR ENSMUSG00000000148 Brat1 ENSMUST00000110806 ENSMUSP00000106429 TRANSLATION protein_coding - - 1 597.0 0.0 0.0 0.0 21.9 0.0 -2,-5 0.0523 8 6.0 MINOR ENSMUSG00000000148 Brat1 ENSMUST00000041588 ENSMUSP00000036016 TRANSLATION protein_coding - CCDS19823.1 1 822.0 0.0 0.0 7.8 21.9 0.0 -2,-5 1.0 12 8.0 PRINCIPAL:1 ENSMUSG00000000148 Brat1 ENSMUST00000153440 ENSMUSP00000114216 TRANSLATION nonsense_mediated_decay - - 1 315.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.003 3 -2.0 MINOR ENSMUSG00000079215 Zfp664 ENSMUST00000134463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079215 Zfp664 ENSMUST00000141533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079215 Zfp664 ENSMUST00000199154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079215 Zfp664 ENSMUST00000111417 ENSMUSP00000107048 TRANSLATION protein_coding - CCDS39284.1 1 261.0 36.0 1.0 8.5 190.2 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000079215 Zfp664 ENSMUST00000134473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079215 Zfp664 ENSMUST00000130616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044716 Dok7 ENSMUST00000101298 ENSMUSP00000098856 TRANSLATION protein_coding - - 1 360.0 0.0 2.16 0.0 0.0 0.0 -3,-4 0.0 3 1.002 MINOR ENSMUSG00000044716 Dok7 ENSMUST00000050709 ENSMUSP00000059538 TRANSLATION protein_coding - - 1 570.0 0.0 3.5 0.8 33.2 0.0 -4,-6 0.2239 5 9.678 MINOR ENSMUSG00000044716 Dok7 ENSMUST00000114270 ENSMUSP00000109909 TRANSLATION protein_coding - - 1 504.0 0.0 4.66 1.7 33.2 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000044716 Dok7 ENSMUST00000155097 - NO_TRANSLATION retained_intron ENSMUSG00000044716 Dok7 ENSMUST00000133381 ENSMUSP00000116023 TRANSLATION protein_coding stop - 3 114.0 0.0 2.16 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000061535 C1qtnf7 ENSMUST00000121872 ENSMUSP00000113520 TRANSLATION protein_coding - CCDS19262.1 1 289.0 0.0 1.7 34.9 166.6 0.0 -1,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000061535 C1qtnf7 ENSMUST00000076939 ENSMUSP00000076206 TRANSLATION protein_coding - CCDS51488.1 1 296.0 0.0 1.7 8.7 166.6 0.0 -1,-3 0.5947 2 12.908 MINOR ENSMUSG00000061535 C1qtnf7 ENSMUST00000144558 ENSMUSP00000120917 TRANSLATION protein_coding stop - 3 67.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000046245 Pilra ENSMUST00000130460 - NO_TRANSLATION retained_intron ENSMUSG00000046245 Pilra ENSMUST00000197586 ENSMUSP00000142631 TRANSLATION protein_coding stop - 2 94.0 0.0 1.75 0.0 0.0 0.0 1,-2 0.0771 - -2.0 MINOR ENSMUSG00000046245 Pilra ENSMUST00000110980 ENSMUSP00000106608 TRANSLATION protein_coding - - 2 299.0 0.0 2.75 0.0 0.0 1.0 0,-5 0.2203 1 6.0 ALTERNATIVE:2 ENSMUSG00000046245 Pilra ENSMUST00000058897 ENSMUSP00000050313 TRANSLATION protein_coding - CCDS19780.1 1 302.0 0.0 2.75 0.0 0.0 1.0 1,-2 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000046245 Pilra ENSMUST00000199028 ENSMUSP00000142391 TRANSLATION protein_coding stop - 5 69.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0941 - -2.0 MINOR ENSMUSG00000072722 Ccdc121rt2 ENSMUST00000100882 ENSMUSP00000098441 TRANSLATION protein_coding - CCDS51616.1 - 461.0 0.0 0.0 0.0 263.1 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000016503 Gtf3a ENSMUST00000146511 ENSMUSP00000119607 TRANSLATION protein_coding - CCDS19873.2 1 364.0 34.0 6.045 1.1 135.0 0.0 -4,-6 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000016503 Gtf3a ENSMUST00000133682 - NO_TRANSLATION retained_intron ENSMUSG00000016503 Gtf3a ENSMUST00000132102 ENSMUSP00000115824 TRANSLATION protein_coding - - 1 342.0 34.0 5.925 0.0 135.0 0.0 -4,-7 0.0737 1 17.76 MINOR ENSMUSG00000016503 Gtf3a ENSMUST00000133296 - NO_TRANSLATION retained_intron ENSMUSG00000029725 Ppp1r35 ENSMUST00000198929 ENSMUSP00000143182 TRANSLATION protein_coding start - 3 101.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029725 Ppp1r35 ENSMUST00000152298 - NO_TRANSLATION retained_intron ENSMUSG00000029725 Ppp1r35 ENSMUST00000031739 ENSMUSP00000031739 TRANSLATION protein_coding - CCDS19777.1 1 260.0 0.0 2.0 0.8 152.7 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000029725 Ppp1r35 ENSMUST00000126126 ENSMUSP00000114480 TRANSLATION protein_coding start/stop - 5 144.0 0.0 2.0 0.0 98.8 0.0 -4,0 0.0329 2 -2.0 MINOR ENSMUSG00000034687 Fras1 ENSMUST00000196751 - NO_TRANSLATION retained_intron ENSMUSG00000034687 Fras1 ENSMUST00000199841 - NO_TRANSLATION retained_intron ENSMUSG00000034687 Fras1 ENSMUST00000036019 ENSMUSP00000043250 TRANSLATION protein_coding - CCDS19450.1 1 4010.0 31.0 5.273 5.2 1133.3 0.0 2,-2 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000034687 Fras1 ENSMUST00000197126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034687 Fras1 ENSMUST00000199204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034687 Fras1 ENSMUST00000198016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005514 Por ENSMUST00000150058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005514 Por ENSMUST00000132084 - NO_TRANSLATION retained_intron ENSMUSG00000005514 Por ENSMUST00000149684 - NO_TRANSLATION retained_intron ENSMUSG00000005514 Por ENSMUST00000122113 ENSMUSP00000112924 TRANSLATION protein_coding - - 2 649.0 84.0 11.58 0.0 452.7 1.0 -4,-6 0.0191 26 6.444 MINOR ENSMUSG00000005514 Por ENSMUST00000153515 ENSMUSP00000121022 TRANSLATION protein_coding stop - 3 219.0 33.0 3.83 0.0 135.7 1.0 -4,-6 0.0021 6 -2.0 MINOR ENSMUSG00000005514 Por ENSMUST00000147515 - NO_TRANSLATION retained_intron ENSMUSG00000005514 Por ENSMUST00000153500 ENSMUSP00000121531 TRANSLATION protein_coding stop - 3 273.0 33.0 5.58 0.0 135.7 1.0 -4,-6 0.0021 8 -2.0 MINOR ENSMUSG00000005514 Por ENSMUST00000127096 ENSMUSP00000119138 TRANSLATION protein_coding start/stop - 5 168.0 10.0 1.5 0.0 26.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000005514 Por ENSMUST00000005651 ENSMUSP00000005651 TRANSLATION protein_coding - CCDS39318.1 1 678.0 100.0 13.58 12.9 478.6 1.0 -4,-6 1.0 28 21.0 PRINCIPAL:1 ENSMUSG00000000916 Nsun5 ENSMUST00000202792 - NO_TRANSLATION retained_intron ENSMUSG00000000916 Nsun5 ENSMUST00000202422 ENSMUSP00000143856 TRANSLATION nonsense_mediated_decay start - 3 142.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000000916 Nsun5 ENSMUST00000000940 ENSMUSP00000000940 TRANSLATION protein_coding - CCDS19740.1 1 465.0 18.0 6.298 1.3 104.8 0.0 -1,-4 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000000916 Nsun5 ENSMUST00000124453 - NO_TRANSLATION retained_intron ENSMUSG00000000916 Nsun5 ENSMUST00000131863 - NO_TRANSLATION retained_intron ENSMUSG00000000916 Nsun5 ENSMUST00000127746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000916 Nsun5 ENSMUST00000170342 ENSMUSP00000128370 TRANSLATION nonsense_mediated_decay - - 3 91.0 0.0 0.0 0.0 0.0 0.0 -1,1 0.0007 - -2.0 MINOR ENSMUSG00000000916 Nsun5 ENSMUST00000126454 - NO_TRANSLATION retained_intron ENSMUSG00000000916 Nsun5 ENSMUST00000141867 - NO_TRANSLATION retained_intron ENSMUSG00000029267 Mtf2 ENSMUST00000134026 ENSMUSP00000128797 TRANSLATION nonsense_mediated_decay - - 5 282.0 16.0 6.658 0.0 47.4 0.0 -4,-2 0.0004 2 -2.0 MINOR ENSMUSG00000029267 Mtf2 ENSMUST00000198662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029267 Mtf2 ENSMUST00000081567 ENSMUSP00000080278 TRANSLATION protein_coding - CCDS39201.1 1 593.0 16.0 10.303 14.5 141.1 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000029267 Mtf2 ENSMUST00000129921 ENSMUSP00000137843 TRANSLATION nonsense_mediated_decay start - 5 129.0 3.0 3.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029267 Mtf2 ENSMUST00000124195 ENSMUSP00000126297 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 0.866 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000029267 Mtf2 ENSMUST00000172045 ENSMUSP00000126452 TRANSLATION protein_coding stop - 3 49.0 7.0 1.58 0.0 45.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029267 Mtf2 ENSMUST00000170319 ENSMUSP00000130536 TRANSLATION protein_coding stop - 3 162.0 14.0 4.66 0.0 35.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029267 Mtf2 ENSMUST00000112626 ENSMUSP00000108245 TRANSLATION protein_coding - - 5 536.0 16.0 9.503 6.2 141.1 0.0 -4,-2 0.4403 3 17.938 MINOR ENSMUSG00000029267 Mtf2 ENSMUST00000163823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029267 Mtf2 ENSMUST00000199194 - NO_TRANSLATION retained_intron ENSMUSG00000029267 Mtf2 ENSMUST00000141592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029267 Mtf2 ENSMUST00000131291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029267 Mtf2 ENSMUST00000163195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029267 Mtf2 ENSMUST00000131264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029267 Mtf2 ENSMUST00000143412 ENSMUSP00000132596 TRANSLATION nonsense_mediated_decay - - 1 118.0 0.0 1.8 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000029267 Mtf2 ENSMUST00000137996 ENSMUSP00000121697 TRANSLATION protein_coding start/stop - 5 239.0 16.0 6.905 0.0 47.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000013936 Myl2 ENSMUST00000155612 ENSMUSP00000120105 TRANSLATION protein_coding stop - 5 115.0 8.0 3.41 0.0 29.4 0.0 -4,-5 0.0019 5 -2.0 MINOR ENSMUSG00000013936 Myl2 ENSMUST00000123913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013936 Myl2 ENSMUST00000126006 ENSMUSP00000123261 TRANSLATION protein_coding start/stop - 5 62.0 0.0 1.56 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000013936 Myl2 ENSMUST00000150535 ENSMUSP00000120274 TRANSLATION protein_coding stop - 5 93.0 8.0 2.75 0.0 29.4 0.0 -4,-5 0.0019 4 -2.0 MINOR ENSMUSG00000013936 Myl2 ENSMUST00000014080 ENSMUSP00000014080 TRANSLATION protein_coding - CCDS39252.1 1 166.0 8.0 4.91 35.7 29.4 0.0 -4,-6 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000013936 Myl2 ENSMUST00000146733 ENSMUSP00000142592 TRANSLATION protein_coding stop - 3 102.0 8.0 2.414 0.0 29.4 0.0 -4,-5 0.0019 2 -2.0 MINOR ENSMUSG00000013936 Myl2 ENSMUST00000147178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013936 Myl2 ENSMUST00000111750 ENSMUSP00000107379 TRANSLATION protein_coding - - 2 176.0 8.0 3.91 0.0 29.4 0.0 -4,-6 0.0034 7 16.002 MINOR ENSMUSG00000013936 Myl2 ENSMUST00000139213 ENSMUSP00000114156 TRANSLATION protein_coding stop - 5 98.0 8.0 2.75 0.0 29.4 0.0 -4,-5 0.0019 4 -2.0 MINOR ENSMUSG00000013936 Myl2 ENSMUST00000153816 ENSMUSP00000119627 TRANSLATION protein_coding start/stop - 2 123.0 8.0 2.5 0.0 29.4 0.0 -4,-2 0.0074 4 -2.0 MINOR ENSMUSG00000013936 Myl2 ENSMUST00000152744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013936 Myl2 ENSMUST00000111751 ENSMUSP00000107380 TRANSLATION protein_coding - CCDS39252.1 3 166.0 8.0 4.91 35.7 29.4 0.0 -4,-6 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000029361 Nos1 ENSMUST00000138579 ENSMUSP00000138176 TRANSLATION protein_coding stop - 2 80.0 0.0 1.0 0.0 54.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029361 Nos1 ENSMUST00000138554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029361 Nos1 ENSMUST00000086451 ENSMUSP00000138506 TRANSLATION nonsense_mediated_decay - - 1 1425.0 82.0 21.75 11.7 1245.1 0.0 -4,-5 0.86 35 -2.0 MINOR ENSMUSG00000029361 Nos1 ENSMUST00000142742 ENSMUSP00000120421 TRANSLATION protein_coding - CCDS19606.1 5 1429.0 82.0 21.75 11.7 1245.1 0.0 -4,-5 1.0 35 21.0 PRINCIPAL:1 ENSMUSG00000029361 Nos1 ENSMUST00000171055 ENSMUSP00000127432 TRANSLATION protein_coding - CCDS19606.1 1 1429.0 82.0 21.75 11.7 1245.1 0.0 -4,-5 1.0 35 21.0 PRINCIPAL:1 ENSMUSG00000029361 Nos1 ENSMUST00000124194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029361 Nos1 ENSMUST00000102557 ENSMUSP00000099617 TRANSLATION protein_coding - - 5 1463.0 82.0 20.75 8.8 1243.5 0.0 -4,-5 0.747 35 18.093 MINOR ENSMUSG00000057614 Gnai1 ENSMUST00000074694 ENSMUSP00000074259 TRANSLATION protein_coding - CCDS39018.1 1 354.0 24.0 7.5 36.9 420.3 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000029635 Cdk8 ENSMUST00000198861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029635 Cdk8 ENSMUST00000162494 ENSMUSP00000125516 TRANSLATION nonsense_mediated_decay - - 5 164.0 13.0 4.58 0.0 80.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029635 Cdk8 ENSMUST00000195944 - NO_TRANSLATION retained_intron ENSMUSG00000029635 Cdk8 ENSMUST00000160924 - NO_TRANSLATION retained_intron ENSMUSG00000029635 Cdk8 ENSMUST00000159615 - NO_TRANSLATION retained_intron ENSMUSG00000029635 Cdk8 ENSMUST00000031640 ENSMUSP00000031640 TRANSLATION protein_coding - CCDS19869.1 2 464.0 16.0 11.41 29.4 209.4 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000029635 Cdk8 ENSMUST00000161652 ENSMUSP00000124323 TRANSLATION protein_coding stop - 5 245.0 16.0 7.58 0.0 140.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029635 Cdk8 ENSMUST00000159467 ENSMUSP00000124525 TRANSLATION protein_coding stop - 3 115.0 8.0 2.955 0.0 41.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029635 Cdk8 ENSMUST00000161181 ENSMUSP00000125668 TRANSLATION protein_coding - - 1 399.0 9.0 9.91 19.8 160.0 0.0 -4,-6 0.4001 - 10.016 MINOR ENSMUSG00000029627 Zkscan14 ENSMUST00000031632 ENSMUSP00000031632 TRANSLATION protein_coding - CCDS19860.1 1 521.0 28.0 2.12 0.0 313.9 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000029627 Zkscan14 ENSMUST00000162220 ENSMUSP00000124196 TRANSLATION protein_coding stop - 3 231.0 6.0 0.32 0.0 51.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029627 Zkscan14 ENSMUST00000198959 ENSMUSP00000143630 TRANSLATION protein_coding - - - 146.0 0.0 0.8 0.0 132.1 0.0 -4,-6 0.0006 - 2.262 MINOR ENSMUSG00000015652 Steap1 ENSMUST00000015796 ENSMUSP00000015796 TRANSLATION protein_coding - CCDS19077.1 1 339.0 0.0 3.5 10.3 56.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000015652 Steap1 ENSMUST00000169542 ENSMUSP00000126005 TRANSLATION protein_coding start - 5 109.0 0.0 1.5 0.0 32.1 1.0 -4,-1 0.0015 - -2.0 MINOR ENSMUSG00000029097 Trmt44 ENSMUST00000145930 - NO_TRANSLATION retained_intron ENSMUSG00000029097 Trmt44 ENSMUST00000128195 ENSMUSP00000143908 TRANSLATION protein_coding start - 2 77.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029097 Trmt44 ENSMUST00000030980 ENSMUSP00000030980 TRANSLATION protein_coding - CCDS19230.1 1 713.0 12.0 0.0 0.3 134.0 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000063409 Lrrc43 ENSMUST00000094327 ENSMUSP00000091885 TRANSLATION protein_coding - CCDS19664.1 1 667.0 0.0 1.2 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000063409 Lrrc43 ENSMUST00000121444 ENSMUSP00000113933 TRANSLATION protein_coding - CCDS71662.1 1 660.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.5679 - 6.0 ALTERNATIVE:2 ENSMUSG00000063409 Lrrc43 ENSMUST00000196809 ENSMUSP00000143602 TRANSLATION protein_coding - CCDS80402.1 1 657.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.553 - 6.0 ALTERNATIVE:2 ENSMUSG00000029322 Plac8 ENSMUST00000144595 - NO_TRANSLATION retained_intron ENSMUSG00000029322 Plac8 ENSMUST00000031264 ENSMUSP00000031264 TRANSLATION protein_coding - CCDS19464.1 1 112.0 0.0 2.8 11.9 52.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029322 Plac8 ENSMUST00000097437 ENSMUSP00000108533 TRANSLATION protein_coding - CCDS19464.1 2 112.0 0.0 2.8 11.9 52.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029322 Plac8 ENSMUST00000112910 ENSMUSP00000108531 TRANSLATION protein_coding - CCDS19464.1 2 112.0 0.0 2.8 11.9 52.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067010 Vmn2r10 ENSMUST00000232815 - NO_TRANSLATION retained_intron ENSMUSG00000067010 Vmn2r10 ENSMUST00000233053 ENSMUSP00000156484 TRANSLATION protein_coding - - - 563.0 2.0 2.038 0.0 146.3 0.0 2,-2 0.0024 - 5.258 MINOR ENSMUSG00000067010 Vmn2r10 ENSMUST00000176594 ENSMUSP00000135274 TRANSLATION nonsense_mediated_decay - - 1 76.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0028 - -2.0 MINOR ENSMUSG00000067010 Vmn2r10 ENSMUST00000079163 ENSMUSP00000078162 TRANSLATION protein_coding - CCDS51596.1 5 847.0 4.0 3.408 0.1 364.2 0.0 2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000023104 Rfc2 ENSMUST00000023867 ENSMUSP00000023867 TRANSLATION protein_coding - CCDS19722.1 1 349.0 17.0 9.45 12.4 135.2 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000023104 Rfc2 ENSMUST00000201464 - NO_TRANSLATION retained_intron ENSMUSG00000023104 Rfc2 ENSMUST00000201674 - NO_TRANSLATION retained_intron ENSMUSG00000023104 Rfc2 ENSMUST00000201258 ENSMUSP00000144516 TRANSLATION nonsense_mediated_decay start - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023104 Rfc2 ENSMUST00000202761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023104 Rfc2 ENSMUST00000200767 - NO_TRANSLATION retained_intron ENSMUSG00000001260 Gabrg1 ENSMUST00000197068 - NO_TRANSLATION retained_intron ENSMUSG00000001260 Gabrg1 ENSMUST00000200126 - NO_TRANSLATION retained_intron ENSMUSG00000001260 Gabrg1 ENSMUST00000031119 ENSMUSP00000031119 TRANSLATION protein_coding - CCDS19326.1 1 465.0 0.0 7.1 10.9 287.4 2.0 2,-1 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000001260 Gabrg1 ENSMUST00000199705 ENSMUSP00000142454 TRANSLATION protein_coding start - 1 419.0 0.0 6.1 0.0 205.0 2.0 2,-1 0.0039 2 -2.0 MINOR ENSMUSG00000029478 Ncor2 ENSMUST00000144354 - NO_TRANSLATION retained_intron ENSMUSG00000029478 Ncor2 ENSMUST00000200297 ENSMUSP00000142725 TRANSLATION nonsense_mediated_decay start - 5 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000029478 Ncor2 ENSMUST00000199561 ENSMUSP00000142862 TRANSLATION protein_coding stop - 5 102.0 0.0 1.6 0.0 34.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029478 Ncor2 ENSMUST00000111393 ENSMUSP00000107024 TRANSLATION protein_coding - CCDS57381.1 1 2332.0 4.0 7.6 0.0 126.7 0.0 -4,-5 0.1985 41 10.202 MINOR ENSMUSG00000029478 Ncor2 ENSMUST00000055256 ENSMUSP00000055954 TRANSLATION protein_coding - - 2 2473.0 4.0 8.0 0.1 173.9 0.0 -4,-2 0.8708 42 12.0 PRINCIPAL:4 ENSMUSG00000029478 Ncor2 ENSMUST00000130742 - NO_TRANSLATION retained_intron ENSMUSG00000029478 Ncor2 ENSMUST00000111398 ENSMUSP00000107029 TRANSLATION protein_coding - - 5 2472.0 4.0 8.0 0.1 173.9 0.0 -4,-2 0.8679 42 12.0 ALTERNATIVE:2 ENSMUSG00000029478 Ncor2 ENSMUST00000111402 ENSMUSP00000107033 TRANSLATION protein_coding - - 5 2507.0 4.0 8.0 0.1 173.9 0.0 -4,-2 0.5061 42 12.0 ALTERNATIVE:2 ENSMUSG00000029478 Ncor2 ENSMUST00000138890 ENSMUSP00000117813 TRANSLATION protein_coding start - 5 336.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0019 7 -2.0 MINOR ENSMUSG00000029478 Ncor2 ENSMUST00000134819 ENSMUSP00000115776 TRANSLATION protein_coding start/stop - 2 214.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0011 4 -2.0 MINOR ENSMUSG00000029478 Ncor2 ENSMUST00000134404 ENSMUSP00000121588 TRANSLATION protein_coding stop - 5 1025.0 0.0 0.85 0.0 34.1 0.0 -4,-5 0.0113 15 -2.0 MINOR ENSMUSG00000029478 Ncor2 ENSMUST00000111394 ENSMUSP00000107025 TRANSLATION protein_coding - CCDS57382.1 1 2253.0 4.0 6.35 0.0 44.2 0.0 -4,-2 0.1455 40 7.7 MINOR ENSMUSG00000029478 Ncor2 ENSMUST00000086083 ENSMUSP00000083250 TRANSLATION protein_coding - CCDS39285.2 5 2468.0 4.0 8.0 0.1 173.9 0.0 -4,-2 1.0 41 12.0 ALTERNATIVE:2 ENSMUSG00000029478 Ncor2 ENSMUST00000149968 - NO_TRANSLATION retained_intron ENSMUSG00000029478 Ncor2 ENSMUST00000125053 ENSMUSP00000117098 TRANSLATION protein_coding start - 1 1552.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0315 32 -2.0 MINOR ENSMUSG00000042096 Dao ENSMUST00000199175 ENSMUSP00000143337 TRANSLATION protein_coding start - 3 133.0 13.0 3.5 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000042096 Dao ENSMUST00000162214 - NO_TRANSLATION retained_intron ENSMUSG00000042096 Dao ENSMUST00000086599 ENSMUSP00000083792 TRANSLATION protein_coding - CCDS71641.1 1 249.0 29.0 6.25 0.0 85.7 0.0 0,-5 0.0148 5 3.678 MINOR ENSMUSG00000042096 Dao ENSMUST00000112292 ENSMUSP00000107911 TRANSLATION protein_coding - CCDS19557.1 1 345.0 39.0 9.5 20.9 124.4 0.0 0,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000042096 Dao ENSMUST00000161610 ENSMUSP00000125588 TRANSLATION protein_coding - CCDS19557.1 1 345.0 39.0 9.5 20.9 124.4 0.0 0,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000041939 Mvk ENSMUST00000137167 ENSMUSP00000142758 TRANSLATION protein_coding - - 2 226.0 15.0 4.75 0.0 102.5 0.0 -4,-6 0.0013 6 9.354 MINOR ENSMUSG00000041939 Mvk ENSMUST00000112239 ENSMUSP00000107858 TRANSLATION protein_coding - CCDS80373.1 1 407.0 17.0 8.875 1.0 124.4 0.0 -4,-6 0.2822 9 18.0 MINOR ENSMUSG00000041939 Mvk ENSMUST00000125650 ENSMUSP00000114611 TRANSLATION protein_coding stop - 5 266.0 15.0 5.625 0.0 102.5 0.0 -4,-6 0.0013 7 -2.0 MINOR ENSMUSG00000041939 Mvk ENSMUST00000125120 - NO_TRANSLATION retained_intron ENSMUSG00000041939 Mvk ENSMUST00000124260 ENSMUSP00000143347 TRANSLATION protein_coding - - 5 238.0 15.0 4.875 0.0 102.5 0.0 -4,-6 0.0013 6 9.354 MINOR ENSMUSG00000041939 Mvk ENSMUST00000139420 ENSMUSP00000142376 TRANSLATION protein_coding start - 5 136.0 2.0 2.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000041939 Mvk ENSMUST00000043760 ENSMUSP00000036971 TRANSLATION protein_coding - CCDS19566.1 1 395.0 17.0 8.75 14.2 124.4 0.0 -4,-6 1.0 9 21.748 PRINCIPAL:1 ENSMUSG00000064156 Prol1 ENSMUST00000170832 ENSMUSP00000132678 TRANSLATION protein_coding - CCDS51537.1 1 312.0 0.0 0.0 0.0 0.0 0.0 -2,-4 0.893 4 0.0 PRINCIPAL:1 ENSMUSG00000063406 Tmed5 ENSMUST00000061203 ENSMUSP00000056449 TRANSLATION protein_coding - - 1 126.0 0.0 1.8 0.0 49.4 0.0 3,-2 0.0009 2 3.792 MINOR ENSMUSG00000063406 Tmed5 ENSMUST00000002837 ENSMUSP00000002837 TRANSLATION protein_coding - CCDS19508.1 1 229.0 0.0 2.85 11.0 162.7 0.0 3,-2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000063406 Tmed5 ENSMUST00000119437 ENSMUSP00000112406 TRANSLATION protein_coding - - 1 162.0 0.0 2.6 0.0 91.7 0.0 3,-2 0.0136 4 7.212 MINOR ENSMUSG00000063406 Tmed5 ENSMUST00000118036 ENSMUSP00000113922 TRANSLATION protein_coding - - 1 100.0 0.0 1.8 0.0 49.4 0.0 3,-2 0.0009 2 3.792 MINOR ENSMUSG00000063406 Tmed5 ENSMUST00000117759 ENSMUSP00000112612 TRANSLATION protein_coding - CCDS84924.1 1 100.0 0.0 1.8 0.0 51.2 0.0 3,-2 0.023 2 3.792 MINOR ENSMUSG00000063406 Tmed5 ENSMUST00000119784 ENSMUSP00000113422 TRANSLATION protein_coding - - 2 96.0 0.0 1.8 0.0 49.1 0.0 3,-2 0.0009 2 3.792 MINOR ENSMUSG00000029681 Bcl7b ENSMUST00000111188 ENSMUSP00000106819 TRANSLATION protein_coding - - 5 145.0 0.0 1.18 1.0 101.8 0.0 -4,-7 0.2054 - 12.0 MINOR ENSMUSG00000029681 Bcl7b ENSMUST00000145329 - NO_TRANSLATION retained_intron ENSMUSG00000029681 Bcl7b ENSMUST00000202606 ENSMUSP00000144538 TRANSLATION protein_coding stop - 5 146.0 0.0 0.75 0.0 42.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029681 Bcl7b ENSMUST00000031692 ENSMUSP00000031692 TRANSLATION protein_coding - CCDS51660.1 1 202.0 0.0 1.18 10.1 101.8 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000029681 Bcl7b ENSMUST00000111187 ENSMUSP00000106818 TRANSLATION protein_coding - - 1 58.0 0.0 1.18 0.0 101.8 0.0 -4,-7 0.0368 - 12.0 MINOR ENSMUSG00000045502 Hcar2 ENSMUST00000057145 ENSMUSP00000054104 TRANSLATION protein_coding - CCDS19668.1 - 360.0 0.0 1.0 1.1 111.0 0.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000029330 Cds1 ENSMUST00000031273 ENSMUSP00000031273 TRANSLATION protein_coding - CCDS19472.1 1 461.0 0.0 9.75 8.6 290.1 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000029330 Cds1 ENSMUST00000132213 - NO_TRANSLATION retained_intron ENSMUSG00000014158 Trpv4 ENSMUST00000133019 - NO_TRANSLATION retained_intron ENSMUSG00000014158 Trpv4 ENSMUST00000112222 ENSMUSP00000107840 TRANSLATION protein_coding - - 5 824.0 7.0 10.55 1.0 51.4 7.0 -4,-5 0.0366 6 13.794 MINOR ENSMUSG00000014158 Trpv4 ENSMUST00000112217 ENSMUSP00000107836 TRANSLATION protein_coding - - 5 811.0 8.0 10.55 1.0 67.9 7.0 -4,-5 0.1265 6 16.002 MINOR ENSMUSG00000014158 Trpv4 ENSMUST00000071968 ENSMUSP00000071859 TRANSLATION protein_coding - CCDS19568.1 1 871.0 8.0 11.55 8.0 67.9 7.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000014158 Trpv4 ENSMUST00000212469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014158 Trpv4 ENSMUST00000112219 ENSMUSP00000107838 TRANSLATION protein_coding - - 5 764.0 7.0 9.55 1.0 51.4 7.0 -4,-5 0.0254 6 11.79 MINOR ENSMUSG00000014158 Trpv4 ENSMUST00000112225 ENSMUSP00000107844 TRANSLATION protein_coding - CCDS19568.1 5 871.0 8.0 11.55 8.0 67.9 7.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000014158 Trpv4 ENSMUST00000141828 - NO_TRANSLATION retained_intron ENSMUSG00000106350 Kif19b ENSMUST00000197549 ENSMUSP00000147930 TRANSLATION protein_coding - - 5 984.0 11.0 7.732 0.0 363.0 0.0 -4,-6 0.8957 - 18.0 PRINCIPAL:1 ENSMUSG00000029352 Crybb3 ENSMUST00000136352 ENSMUSP00000121559 TRANSLATION protein_coding stop - 3 65.0 0.0 1.24 0.0 38.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000029352 Crybb3 ENSMUST00000117143 ENSMUSP00000113347 TRANSLATION protein_coding - CCDS19547.1 3 211.0 0.0 4.49 17.7 193.0 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000029352 Crybb3 ENSMUST00000134039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029352 Crybb3 ENSMUST00000120506 ENSMUSP00000112718 TRANSLATION protein_coding - CCDS19547.1 3 211.0 0.0 4.49 17.7 193.0 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000029352 Crybb3 ENSMUST00000140352 ENSMUSP00000121929 TRANSLATION protein_coding stop - 3 119.0 0.0 1.99 0.0 75.4 0.0 -4,-5 0.0001 6 -2.0 MINOR ENSMUSG00000029352 Crybb3 ENSMUST00000153382 - NO_TRANSLATION retained_intron ENSMUSG00000029352 Crybb3 ENSMUST00000118226 ENSMUSP00000112618 TRANSLATION protein_coding - CCDS19547.1 3 211.0 0.0 4.49 17.7 193.0 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000029352 Crybb3 ENSMUST00000131708 ENSMUSP00000115758 TRANSLATION protein_coding stop - 3 79.0 0.0 1.74 0.0 61.3 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000029352 Crybb3 ENSMUST00000155042 - NO_TRANSLATION retained_intron ENSMUSG00000029352 Crybb3 ENSMUST00000119627 ENSMUSP00000113572 TRANSLATION protein_coding - CCDS19547.1 2 211.0 0.0 4.49 17.7 193.0 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000029352 Crybb3 ENSMUST00000076069 ENSMUSP00000075440 TRANSLATION protein_coding - CCDS19547.1 1 211.0 0.0 4.49 17.7 193.0 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000029213 Commd8 ENSMUST00000199767 ENSMUSP00000143790 TRANSLATION nonsense_mediated_decay - - 1 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029213 Commd8 ENSMUST00000196152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029213 Commd8 ENSMUST00000196241 ENSMUSP00000142937 TRANSLATION protein_coding stop - 3 107.0 0.0 0.9 0.0 34.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029213 Commd8 ENSMUST00000198951 - NO_TRANSLATION retained_intron ENSMUSG00000029213 Commd8 ENSMUST00000013693 ENSMUSP00000013693 TRANSLATION protein_coding - CCDS39108.1 1 183.0 0.0 1.15 13.2 61.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000051306 Usp42 ENSMUST00000129606 - NO_TRANSLATION retained_intron ENSMUSG00000051306 Usp42 ENSMUST00000141225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051306 Usp42 ENSMUST00000141396 - NO_TRANSLATION retained_intron ENSMUSG00000051306 Usp42 ENSMUST00000053287 ENSMUSP00000053955 TRANSLATION protein_coding - CCDS39372.1 5 1324.0 8.0 8.25 0.1 157.9 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000051306 Usp42 ENSMUST00000155408 - NO_TRANSLATION retained_intron ENSMUSG00000015880 Ncapg ENSMUST00000134309 - NO_TRANSLATION retained_intron ENSMUSG00000015880 Ncapg ENSMUST00000117396 ENSMUSP00000112871 TRANSLATION protein_coding - CCDS51498.1 5 1004.0 0.0 6.515 0.4 278.7 0.0 -4,-2 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000015880 Ncapg ENSMUST00000123396 - NO_TRANSLATION retained_intron ENSMUSG00000015880 Ncapg ENSMUST00000198274 - NO_TRANSLATION retained_intron ENSMUSG00000015880 Ncapg ENSMUST00000134090 - NO_TRANSLATION retained_intron ENSMUSG00000015880 Ncapg ENSMUST00000129562 - NO_TRANSLATION retained_intron ENSMUSG00000029131 Dnajb6 ENSMUST00000149396 - NO_TRANSLATION retained_intron ENSMUSG00000029131 Dnajb6 ENSMUST00000127753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029131 Dnajb6 ENSMUST00000012734 ENSMUSP00000012734 TRANSLATION protein_coding - CCDS19152.1 1 261.0 0.0 3.58 2.0 97.2 0.0 -4,-5 0.1671 - 9.22 MINOR ENSMUSG00000029131 Dnajb6 ENSMUST00000198694 ENSMUSP00000142783 TRANSLATION protein_coding - - 3 62.0 0.0 1.665 0.0 76.6 0.0 -4,-5 0.0008 - 4.728 MINOR ENSMUSG00000029131 Dnajb6 ENSMUST00000114839 ENSMUSP00000110488 TRANSLATION protein_coding - CCDS39043.1 1 242.0 0.0 5.11 15.3 97.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029131 Dnajb6 ENSMUST00000140376 ENSMUSP00000117159 TRANSLATION protein_coding start - 2 231.0 0.0 1.55 0.0 0.0 0.0 -4,-7 0.0132 2 -2.0 MINOR ENSMUSG00000029131 Dnajb6 ENSMUST00000149553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029131 Dnajb6 ENSMUST00000196528 ENSMUSP00000142878 TRANSLATION protein_coding - - 5 243.0 0.0 4.78 0.1 97.2 0.0 -4,-5 0.1079 - 11.34 MINOR ENSMUSG00000029131 Dnajb6 ENSMUST00000008733 ENSMUSP00000008733 TRANSLATION protein_coding - CCDS19151.1 1 365.0 0.0 4.78 0.1 97.2 0.0 -4,-5 0.0732 2 11.34 MINOR ENSMUSG00000029131 Dnajb6 ENSMUST00000151976 - NO_TRANSLATION retained_intron ENSMUSG00000029131 Dnajb6 ENSMUST00000196785 ENSMUSP00000143639 TRANSLATION protein_coding stop - 3 22.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029131 Dnajb6 ENSMUST00000139126 - NO_TRANSLATION retained_intron ENSMUSG00000048703 Speer4b ENSMUST00000155721 ENSMUSP00000122872 TRANSLATION protein_coding start - 5 217.0 0.0 2.25 0.0 87.1 0.0 -4,-7 0.0186 - -2.0 MINOR ENSMUSG00000048703 Speer4b ENSMUST00000053257 ENSMUSP00000062903 TRANSLATION protein_coding - CCDS19140.1 1 267.0 0.0 2.25 0.0 87.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048703 Speer4b ENSMUST00000124535 - NO_TRANSLATION retained_intron ENSMUSG00000042726 Trafd1 ENSMUST00000146185 ENSMUSP00000117239 TRANSLATION protein_coding stop - 3 44.0 6.0 0.55 0.0 0.0 0.0 -4,-5 0.0117 2 -2.0 MINOR ENSMUSG00000042726 Trafd1 ENSMUST00000120784 ENSMUSP00000113910 TRANSLATION protein_coding - CCDS51639.1 1 576.0 20.0 2.58 1.2 0.0 0.0 -4,-5 0.6051 11 13.0 ALTERNATIVE:2 ENSMUSG00000042726 Trafd1 ENSMUST00000202064 ENSMUSP00000144108 TRANSLATION protein_coding start - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 2 -2.0 MINOR ENSMUSG00000042726 Trafd1 ENSMUST00000156158 ENSMUSP00000143426 TRANSLATION nonsense_mediated_decay start - 1 215.0 8.0 0.8 0.0 0.0 0.0 -4,-5 0.0228 1 -2.0 MINOR ENSMUSG00000042726 Trafd1 ENSMUST00000042312 ENSMUSP00000047475 TRANSLATION protein_coding - CCDS51638.1 1 580.0 20.0 2.58 1.2 0.0 0.0 -4,-5 0.9008 11 13.0 PRINCIPAL:2 ENSMUSG00000042726 Trafd1 ENSMUST00000133138 - NO_TRANSLATION retained_intron ENSMUSG00000042726 Trafd1 ENSMUST00000126550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042726 Trafd1 ENSMUST00000155379 ENSMUSP00000118351 TRANSLATION protein_coding stop - 5 87.0 10.0 1.28 0.0 0.0 0.0 -4,-5 0.0122 3 -2.0 MINOR ENSMUSG00000042726 Trafd1 ENSMUST00000152265 ENSMUSP00000115159 TRANSLATION protein_coding stop - 2 169.0 18.0 2.58 0.0 0.0 0.0 -4,-5 0.0688 5 -2.0 MINOR ENSMUSG00000041505 Gm3402 ENSMUST00000036715 ENSMUSP00000036997 TRANSLATION protein_coding - - 5 326.0 0.0 2.83 0.0 28.8 0.0 -4,0 0.7587 - 6.0 PRINCIPAL:2 ENSMUSG00000041505 Gm3402 ENSMUST00000077133 ENSMUSP00000076380 TRANSLATION protein_coding - - 5 307.0 0.0 2.5 0.0 28.8 0.0 -4,0 0.0236 - 5.298 ALTERNATIVE:2 ENSMUSG00000041505 Gm3402 ENSMUST00000200228 ENSMUSP00000143398 TRANSLATION protein_coding - CCDS85004.1 5 315.0 0.0 2.5 0.0 28.8 0.0 -4,0 0.2088 - 5.298 ALTERNATIVE:2 ENSMUSG00000091034 Gm17660 ENSMUST00000198485 ENSMUSP00000143623 TRANSLATION protein_coding - CCDS51577.1 1 90.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.9479 - 0.0 PRINCIPAL:1 ENSMUSG00000091034 Gm17660 ENSMUST00000164471 ENSMUSP00000132880 TRANSLATION protein_coding - CCDS51577.1 1 90.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.9479 - 0.0 PRINCIPAL:1 ENSMUSG00000091034 Gm17660 ENSMUST00000178967 ENSMUSP00000136896 TRANSLATION protein_coding - CCDS51577.1 5 90.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.9479 - 0.0 PRINCIPAL:1 ENSMUSG00000079109 Pms2 ENSMUST00000128153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079109 Pms2 ENSMUST00000128207 - NO_TRANSLATION retained_intron ENSMUSG00000079109 Pms2 ENSMUST00000110707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079109 Pms2 ENSMUST00000147910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079109 Pms2 ENSMUST00000141942 - NO_TRANSLATION retained_intron ENSMUSG00000079109 Pms2 ENSMUST00000148011 ENSMUSP00000119875 TRANSLATION protein_coding - CCDS39375.1 1 859.0 16.0 10.02 0.3 238.2 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000079109 Pms2 ENSMUST00000168085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079109 Pms2 ENSMUST00000110710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079109 Pms2 ENSMUST00000170083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079109 Pms2 ENSMUST00000110709 ENSMUSP00000106337 TRANSLATION protein_coding - - 5 461.0 16.0 7.69 0.0 158.5 0.0 -4,-5 0.0 2 8.556 MINOR ENSMUSG00000079109 Pms2 ENSMUST00000164999 ENSMUSP00000133062 TRANSLATION protein_coding start/stop - 3 173.0 0.0 1.58 0.0 51.9 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000079109 Pms2 ENSMUST00000154781 - NO_TRANSLATION retained_intron ENSMUSG00000079109 Pms2 ENSMUST00000126331 - NO_TRANSLATION retained_intron ENSMUSG00000007812 Zfp655 ENSMUST00000167316 ENSMUSP00000128969 TRANSLATION protein_coding - CCDS19861.1 1 541.0 27.0 0.6 7.1 116.0 0.0 -4,-5 1.0 7 17.01 PRINCIPAL:1 ENSMUSG00000007812 Zfp655 ENSMUST00000200039 ENSMUSP00000143198 TRANSLATION protein_coding - CCDS51698.1 1 181.0 0.0 1.2 10.1 88.8 0.0 -4,-5 0.8866 1 13.368 MINOR ENSMUSG00000007812 Zfp655 ENSMUST00000199322 ENSMUSP00000142754 TRANSLATION protein_coding - - 1 103.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000007812 Zfp655 ENSMUST00000199003 ENSMUSP00000142825 TRANSLATION protein_coding - CCDS84998.1 2 110.0 0.0 0.2 7.8 0.0 0.0 -4,-5 0.4922 1 3.243 MINOR ENSMUSG00000007812 Zfp655 ENSMUST00000196069 ENSMUSP00000142639 TRANSLATION protein_coding - - 1 87.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.0049 1 0.0 MINOR ENSMUSG00000007812 Zfp655 ENSMUST00000085661 ENSMUSP00000082803 TRANSLATION protein_coding stop - 3 165.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037913 Tmem156 ENSMUST00000203117 - NO_TRANSLATION retained_intron ENSMUSG00000037913 Tmem156 ENSMUST00000043352 ENSMUSP00000044102 TRANSLATION protein_coding - - 5 287.0 0.0 1.0 0.1 357.6 4.0 -1,-5 0.8411 - 8.0 PRINCIPAL:2 ENSMUSG00000037913 Tmem156 ENSMUST00000212080 ENSMUSP00000148480 TRANSLATION protein_coding - - 5 321.0 0.0 1.0 0.0 357.6 3.0 -4,-2 0.2053 - 8.0 ALTERNATIVE:2 ENSMUSG00000037913 Tmem156 ENSMUST00000203664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037913 Tmem156 ENSMUST00000212640 ENSMUSP00000148300 TRANSLATION protein_coding - - 5 257.0 0.0 1.0 0.0 173.1 3.0 -4,-2 0.0597 - 6.0 MINOR ENSMUSG00000037913 Tmem156 ENSMUST00000212194 ENSMUSP00000148573 TRANSLATION protein_coding - - 5 259.0 0.0 1.0 0.0 315.2 3.0 -4,-2 0.0674 - 6.0 MINOR ENSMUSG00000096732 Gm8897 ENSMUST00000167041 ENSMUSP00000127509 TRANSLATION protein_coding - - 5 199.0 0.0 1.206 0.0 78.3 0.0 -4,-2 0.7804 - 12.0 PRINCIPAL:1 ENSMUSG00000096732 Gm8897 ENSMUST00000179679 ENSMUSP00000136745 TRANSLATION protein_coding start - 5 154.0 0.0 1.206 0.0 78.3 0.0 -4,-5 0.0623 - -2.0 MINOR ENSMUSG00000053134 Supt7l ENSMUST00000201769 ENSMUSP00000144065 TRANSLATION protein_coding - CCDS19186.1 1 412.0 0.0 0.0 22.9 77.1 0.0 -4,-6 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000053134 Supt7l ENSMUST00000200721 ENSMUSP00000144294 TRANSLATION protein_coding - - 5 363.0 0.0 0.0 0.0 77.1 0.0 -4,-6 0.0377 3 6.0 MINOR ENSMUSG00000053134 Supt7l ENSMUST00000202421 ENSMUSP00000143795 TRANSLATION protein_coding - - 1 344.0 0.0 0.0 0.0 77.1 0.0 -4,-6 0.036 4 6.0 MINOR ENSMUSG00000053134 Supt7l ENSMUST00000202932 - NO_TRANSLATION retained_intron ENSMUSG00000053134 Supt7l ENSMUST00000065388 ENSMUSP00000067337 TRANSLATION protein_coding - CCDS19186.1 1 412.0 0.0 0.0 22.9 77.1 0.0 -4,-6 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000053134 Supt7l ENSMUST00000201692 - NO_TRANSLATION retained_intron ENSMUSG00000096230 Pramel36 ENSMUST00000201400 ENSMUSP00000143980 TRANSLATION protein_coding - - 1 481.0 2.0 2.3 0.4 0.0 0.0 -4,-7 0.649 - 8.0 PRINCIPAL:1 ENSMUSG00000029655 N4bp2l2 ENSMUST00000201390 - NO_TRANSLATION retained_intron ENSMUSG00000029655 N4bp2l2 ENSMUST00000144378 - NO_TRANSLATION retained_intron ENSMUSG00000029655 N4bp2l2 ENSMUST00000118316 ENSMUSP00000113895 TRANSLATION protein_coding - CCDS19888.2 5 575.0 11.0 4.25 2.2 56.6 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000029655 N4bp2l2 ENSMUST00000156180 ENSMUSP00000118475 TRANSLATION protein_coding start - 2 138.0 10.0 1.53 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029655 N4bp2l2 ENSMUST00000201384 - NO_TRANSLATION retained_intron ENSMUSG00000029655 N4bp2l2 ENSMUST00000141857 ENSMUSP00000121091 TRANSLATION protein_coding stop - 5 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029655 N4bp2l2 ENSMUST00000164332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029655 N4bp2l2 ENSMUST00000145822 - NO_TRANSLATION retained_intron ENSMUSG00000029255 Gnrhr ENSMUST00000113372 ENSMUSP00000108999 TRANSLATION protein_coding - CCDS80313.1 1 177.0 0.0 0.5 0.0 67.1 5.0 -4,-5 0.0233 - 3.666 MINOR ENSMUSG00000029255 Gnrhr ENSMUST00000031172 ENSMUSP00000031172 TRANSLATION protein_coding - CCDS19379.1 1 327.0 0.0 1.8 11.8 133.8 8.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029255 Gnrhr ENSMUST00000094654 ENSMUSP00000092238 TRANSLATION protein_coding - CCDS84897.1 1 264.0 0.0 1.2 0.0 93.8 7.0 -4,-5 0.0178 - 7.602 MINOR ENSMUSG00000002486 Tchp ENSMUST00000112199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002486 Tchp ENSMUST00000202105 - NO_TRANSLATION retained_intron ENSMUSG00000002486 Tchp ENSMUST00000128625 - NO_TRANSLATION retained_intron ENSMUSG00000002486 Tchp ENSMUST00000152999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002486 Tchp ENSMUST00000124242 - NO_TRANSLATION retained_intron ENSMUSG00000002486 Tchp ENSMUST00000131679 ENSMUSP00000119890 TRANSLATION protein_coding start/stop - 3 215.0 0.0 0.0 0.0 35.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002486 Tchp ENSMUST00000094441 ENSMUSP00000092009 TRANSLATION protein_coding - CCDS51624.1 1 497.0 0.0 0.0 14.5 110.1 0.0 -4,-2 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000002486 Tchp ENSMUST00000202252 - NO_TRANSLATION retained_intron ENSMUSG00000029439 Sfswap ENSMUST00000199925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029439 Sfswap ENSMUST00000200500 ENSMUSP00000143351 TRANSLATION nonsense_mediated_decay start - 3 82.0 0.0 0.0 0.0 0.0 0.0 1,1 0.0023 - -2.0 MINOR ENSMUSG00000029439 Sfswap ENSMUST00000198423 - NO_TRANSLATION TEC ENSMUSG00000029439 Sfswap ENSMUST00000196873 - NO_TRANSLATION retained_intron ENSMUSG00000029439 Sfswap ENSMUST00000053737 ENSMUSP00000062413 TRANSLATION protein_coding - CCDS19694.1 5 945.0 0.0 3.85 5.0 212.1 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000029439 Sfswap ENSMUST00000200662 - NO_TRANSLATION retained_intron ENSMUSG00000029439 Sfswap ENSMUST00000196698 ENSMUSP00000142464 TRANSLATION nonsense_mediated_decay - - 5 121.0 0.0 0.0 0.0 92.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029439 Sfswap ENSMUST00000198266 - NO_TRANSLATION retained_intron ENSMUSG00000029439 Sfswap ENSMUST00000196147 - NO_TRANSLATION retained_intron ENSMUSG00000029439 Sfswap ENSMUST00000198836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029439 Sfswap ENSMUST00000199692 - NO_TRANSLATION retained_intron ENSMUSG00000029439 Sfswap ENSMUST00000195961 - NO_TRANSLATION retained_intron ENSMUSG00000029439 Sfswap ENSMUST00000199394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029439 Sfswap ENSMUST00000199887 - NO_TRANSLATION retained_intron ENSMUSG00000029439 Sfswap ENSMUST00000199215 ENSMUSP00000143640 TRANSLATION nonsense_mediated_decay start - 5 69.0 0.0 1.25 0.0 21.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029312 Klhl8 ENSMUST00000147184 - NO_TRANSLATION retained_intron ENSMUSG00000029312 Klhl8 ENSMUST00000131843 ENSMUSP00000117671 TRANSLATION nonsense_mediated_decay - - 5 115.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029312 Klhl8 ENSMUST00000031254 ENSMUSP00000031254 TRANSLATION protein_coding - CCDS19479.1 1 629.0 0.0 9.9 2.3 446.0 0.0 -4,-2 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000029312 Klhl8 ENSMUST00000112811 ENSMUSP00000108430 TRANSLATION protein_coding - - 5 446.0 0.0 7.9 2.3 260.6 0.0 -4,-2 0.1788 5 2.998 MINOR ENSMUSG00000029312 Klhl8 ENSMUST00000112815 ENSMUSP00000108434 TRANSLATION protein_coding - - 5 553.0 0.0 8.9 1.0 360.3 0.0 -4,-7 0.0931 5 4.86 MINOR ENSMUSG00000029101 Rgs12 ENSMUST00000030984 ENSMUSP00000030984 TRANSLATION protein_coding - CCDS19222.1 1 1381.0 0.0 7.11 0.1 765.9 0.0 -4,-7 1.0 16 8.0 PRINCIPAL:2 ENSMUSG00000029101 Rgs12 ENSMUST00000141562 - NO_TRANSLATION retained_intron ENSMUSG00000029101 Rgs12 ENSMUST00000114285 ENSMUSP00000109924 TRANSLATION protein_coding - - 5 803.0 0.0 7.11 0.4 718.5 0.0 -4,-5 0.2078 8 7.8 MINOR ENSMUSG00000029101 Rgs12 ENSMUST00000225237 ENSMUSP00000153391 TRANSLATION protein_coding stop - - 78.0 0.0 0.6 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029101 Rgs12 ENSMUST00000128161 - NO_TRANSLATION retained_intron ENSMUSG00000029101 Rgs12 ENSMUST00000156819 ENSMUSP00000116913 TRANSLATION protein_coding start/stop - 5 236.0 0.0 1.9 0.0 118.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029101 Rgs12 ENSMUST00000114281 ENSMUSP00000109920 TRANSLATION protein_coding - CCDS51472.1 1 723.0 0.0 7.11 0.0 717.8 0.0 -3,-4 0.4127 8 7.8 MINOR ENSMUSG00000029101 Rgs12 ENSMUST00000155162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029101 Rgs12 ENSMUST00000202915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029101 Rgs12 ENSMUST00000201936 ENSMUSP00000143979 TRANSLATION protein_coding start/stop - 3 185.0 0.0 0.0 0.0 140.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029101 Rgs12 ENSMUST00000150139 ENSMUSP00000117158 TRANSLATION protein_coding start - 5 107.0 0.0 0.6 0.0 38.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029101 Rgs12 ENSMUST00000114284 ENSMUSP00000109923 TRANSLATION protein_coding - - 5 733.0 0.0 7.11 0.1 717.8 0.0 -4,-5 0.2087 8 7.8 MINOR ENSMUSG00000029101 Rgs12 ENSMUST00000114280 ENSMUSP00000109919 TRANSLATION protein_coding - - 1 499.0 0.0 6.36 0.0 441.6 0.0 -3,-4 0.0003 6 5.1 MINOR ENSMUSG00000029101 Rgs12 ENSMUST00000087684 ENSMUSP00000084970 TRANSLATION protein_coding - - 5 1451.0 0.0 7.11 0.4 766.6 0.0 -4,-7 0.3951 16 8.0 ALTERNATIVE:2 ENSMUSG00000029101 Rgs12 ENSMUST00000153972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029101 Rgs12 ENSMUST00000135403 - NO_TRANSLATION retained_intron ENSMUSG00000029101 Rgs12 ENSMUST00000156339 ENSMUSP00000115064 TRANSLATION protein_coding stop - 3 116.0 0.0 1.33 0.0 166.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029101 Rgs12 ENSMUST00000114283 ENSMUSP00000109922 TRANSLATION protein_coding - - 5 793.0 0.0 7.11 0.0 718.5 0.0 -3,-4 0.2198 8 7.8 MINOR ENSMUSG00000029597 Sds ENSMUST00000066540 ENSMUSP00000064849 TRANSLATION protein_coding - CCDS19619.1 1 327.0 16.0 6.83 15.9 251.6 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000029597 Sds ENSMUST00000111898 ENSMUSP00000107529 TRANSLATION protein_coding stop - 2 101.0 3.0 2.5 0.0 93.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000029597 Sds ENSMUST00000201684 ENSMUSP00000143838 TRANSLATION protein_coding - CCDS19619.1 5 327.0 16.0 6.83 15.9 251.6 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000029597 Sds ENSMUST00000124978 - NO_TRANSLATION retained_intron ENSMUSG00000033036 Ppihl ENSMUST00000200338 ENSMUSP00000142776 TRANSLATION protein_coding - - 5 134.0 3.0 1.75 0.0 83.3 0.0 -4,-5 0.0 - 7.188 MINOR ENSMUSG00000033036 Ppihl ENSMUST00000122204 ENSMUSP00000142767 TRANSLATION protein_coding - - - 177.0 8.0 2.75 33.8 164.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000029379 Cxcl3 ENSMUST00000201840 - NO_TRANSLATION retained_intron ENSMUSG00000029379 Cxcl3 ENSMUST00000031326 ENSMUSP00000031326 TRANSLATION protein_coding - CCDS19417.1 1 100.0 0.0 1.9 0.4 44.1 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000011884 Gltp ENSMUST00000112214 ENSMUSP00000107833 TRANSLATION protein_coding - - 3 179.0 5.0 4.25 0.0 53.6 0.0 -4,-5 0.0002 5 9.822 MINOR ENSMUSG00000011884 Gltp ENSMUST00000112212 ENSMUSP00000107831 TRANSLATION protein_coding - - 5 190.0 5.0 4.58 0.0 114.2 0.0 -4,-5 0.0006 6 14.118 MINOR ENSMUSG00000011884 Gltp ENSMUST00000012028 ENSMUSP00000012028 TRANSLATION protein_coding - CCDS19569.1 1 209.0 6.0 5.08 32.6 145.5 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000029500 Pgam5 ENSMUST00000059229 ENSMUSP00000057760 TRANSLATION protein_coding - CCDS19523.1 1 287.0 6.0 5.75 10.0 0.0 0.0 0,-5 1.0 8 15.0 PRINCIPAL:4 ENSMUSG00000029500 Pgam5 ENSMUST00000112505 ENSMUSP00000108124 TRANSLATION protein_coding - CCDS51606.1 1 288.0 6.0 5.75 10.0 0.0 0.0 0,-5 0.9839 8 15.0 ALTERNATIVE:1 ENSMUSG00000029500 Pgam5 ENSMUST00000136738 - NO_TRANSLATION retained_intron ENSMUSG00000029500 Pgam5 ENSMUST00000196381 ENSMUSP00000143477 TRANSLATION protein_coding stop - 5 179.0 4.0 4.0 0.0 0.0 0.0 -2,1 0.013 5 -2.0 MINOR ENSMUSG00000041733 Coq5 ENSMUST00000129024 ENSMUSP00000123308 TRANSLATION nonsense_mediated_decay start - 3 135.0 20.0 1.75 0.0 35.7 0.0 -4,-5 0.0005 4 -2.0 MINOR ENSMUSG00000041733 Coq5 ENSMUST00000201429 - NO_TRANSLATION retained_intron ENSMUSG00000041733 Coq5 ENSMUST00000040421 ENSMUSP00000048001 TRANSLATION protein_coding - CCDS19585.1 1 327.0 20.0 5.5 14.4 60.8 0.0 -4,0 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000049530 Clrn2 ENSMUST00000053250 ENSMUSP00000058204 TRANSLATION protein_coding - CCDS51497.1 1 232.0 0.0 3.0 30.9 0.0 0.0 2,-3 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000029471 Camkk2 ENSMUST00000111668 ENSMUSP00000107297 TRANSLATION protein_coding - CCDS80395.1 1 588.0 19.0 8.27534 3.0 216.1 0.0 -4,-5 1.0 16 13.0 PRINCIPAL:2 ENSMUSG00000029471 Camkk2 ENSMUST00000199988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029471 Camkk2 ENSMUST00000197373 ENSMUSP00000142717 TRANSLATION protein_coding start - 1 145.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000029471 Camkk2 ENSMUST00000196742 ENSMUSP00000142812 TRANSLATION protein_coding - - 1 216.0 9.0 1.33 0.0 0.0 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000029471 Camkk2 ENSMUST00000199830 - NO_TRANSLATION retained_intron ENSMUSG00000029471 Camkk2 ENSMUST00000200109 ENSMUSP00000143732 TRANSLATION protein_coding - CCDS19655.1 1 541.0 19.0 8.27534 2.1 216.1 0.0 -4,-5 0.6063 14 12.55 ALTERNATIVE:2 ENSMUSG00000029471 Camkk2 ENSMUST00000199179 ENSMUSP00000142751 TRANSLATION nonsense_mediated_decay start - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000029471 Camkk2 ENSMUST00000198029 ENSMUSP00000142896 TRANSLATION protein_coding start - 1 420.0 10.0 6.94534 0.0 196.3 0.0 -4,-2 0.0041 9 -2.0 MINOR ENSMUSG00000029471 Camkk2 ENSMUST00000199599 ENSMUSP00000143730 TRANSLATION protein_coding stop - 3 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029471 Camkk2 ENSMUST00000198177 - NO_TRANSLATION retained_intron ENSMUSG00000029471 Camkk2 ENSMUST00000198257 ENSMUSP00000143162 TRANSLATION protein_coding stop - 5 119.0 9.0 1.66 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000079093 4930449I24Rik ENSMUST00000110598 ENSMUSP00000106228 TRANSLATION protein_coding - CCDS51701.1 1 319.0 0.0 2.5 0.0 28.6 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000070686 Pramel34 ENSMUST00000159691 ENSMUSP00000159578 TRANSLATION protein_coding - - 1 287.0 0.0 1.6 0.0 0.0 0.0 -4,-7 0.0336 - 2.802 MINOR ENSMUSG00000070686 Pramel34 ENSMUST00000160382 ENSMUSP00000125428 TRANSLATION protein_coding - CCDS51552.1 3 475.0 2.0 3.2 0.4 0.0 0.0 -4,-7 0.9826 - 8.0 PRINCIPAL:1 ENSMUSG00000070686 Pramel34 ENSMUST00000162964 ENSMUSP00000124780 TRANSLATION protein_coding - CCDS51552.1 1 475.0 2.0 3.2 0.4 0.0 0.0 -4,-7 0.9826 - 8.0 PRINCIPAL:1 ENSMUSG00000070686 Pramel34 ENSMUST00000159578 ENSMUSP00000124250 TRANSLATION protein_coding - - 3 163.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0189 - 1.602 MINOR ENSMUSG00000040532 Abhd11 ENSMUST00000123227 ENSMUSP00000143994 TRANSLATION nonsense_mediated_decay - - 5 158.0 6.0 2.59 0.0 51.8 0.0 1,3 0.0023 1 -2.0 MINOR ENSMUSG00000040532 Abhd11 ENSMUST00000154469 ENSMUSP00000144449 TRANSLATION protein_coding - CCDS51659.1 1 227.0 6.0 4.66 0.0 72.6 0.0 -4,-2 0.0295 6 12.96 MINOR ENSMUSG00000040532 Abhd11 ENSMUST00000046999 ENSMUSP00000043041 TRANSLATION protein_coding - CCDS19730.1 1 307.0 9.0 5.82 0.0 82.5 0.0 1,3 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000040532 Abhd11 ENSMUST00000111216 ENSMUSP00000106847 TRANSLATION protein_coding - CCDS51659.1 3 227.0 6.0 4.66 0.0 72.6 0.0 -4,-2 0.0295 6 12.96 MINOR ENSMUSG00000040532 Abhd11 ENSMUST00000201890 ENSMUSP00000144329 TRANSLATION protein_coding stop - 5 59.0 0.0 0.0 0.0 0.0 0.0 1,4 0.0039 - -2.0 MINOR ENSMUSG00000040532 Abhd11 ENSMUST00000149778 ENSMUSP00000144553 TRANSLATION nonsense_mediated_decay - - 2 78.0 3.0 1.43 0.0 43.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000040532 Abhd11 ENSMUST00000148831 ENSMUSP00000144595 TRANSLATION nonsense_mediated_decay - - 3 67.0 3.0 1.33 0.0 41.6 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000036555 Iqce ENSMUST00000149674 - NO_TRANSLATION retained_intron ENSMUSG00000036555 Iqce ENSMUST00000139382 - NO_TRANSLATION retained_intron ENSMUSG00000036555 Iqce ENSMUST00000123683 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036555 Iqce ENSMUST00000148788 - NO_TRANSLATION retained_intron ENSMUSG00000036555 Iqce ENSMUST00000135028 ENSMUSP00000143397 TRANSLATION protein_coding stop - 3 101.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000036555 Iqce ENSMUST00000124005 - NO_TRANSLATION retained_intron ENSMUSG00000036555 Iqce ENSMUST00000147839 - NO_TRANSLATION retained_intron ENSMUSG00000036555 Iqce ENSMUST00000077890 ENSMUSP00000077050 TRANSLATION protein_coding - CCDS84987.1 1 761.0 0.0 0.0 0.0 41.8 0.0 -4,-5 0.4717 6 2.0 ALTERNATIVE:2 ENSMUSG00000036555 Iqce ENSMUST00000041783 ENSMUSP00000045913 TRANSLATION protein_coding - CCDS39358.1 1 778.0 0.0 0.0 0.1 41.8 0.0 -4,-5 1.0 6 2.0 PRINCIPAL:2 ENSMUSG00000036555 Iqce ENSMUST00000136385 - NO_TRANSLATION retained_intron ENSMUSG00000036555 Iqce ENSMUST00000129704 ENSMUSP00000121457 TRANSLATION protein_coding start/stop - 5 396.0 0.0 0.0 0.0 41.8 0.0 -4,-5 0.0604 4 -2.0 MINOR ENSMUSG00000036555 Iqce ENSMUST00000142081 ENSMUSP00000120637 TRANSLATION protein_coding stop - 5 185.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000069720 4930572O03Rik ENSMUST00000092696 ENSMUSP00000090370 TRANSLATION protein_coding - - 1 211.0 0.0 2.25 0.0 99.9 0.0 -4,-7 0.7434 - 12.0 PRINCIPAL:1 ENSMUSG00000056014 A430033K04Rik ENSMUST00000200521 ENSMUSP00000143566 TRANSLATION protein_coding - - 1 102.0 0.0 1.6 0.0 84.3 0.0 -4,-7 0.0 - 2.802 MINOR ENSMUSG00000056014 A430033K04Rik ENSMUST00000069862 ENSMUSP00000067316 TRANSLATION protein_coding - - 1 680.0 35.0 3.2 0.0 238.3 0.0 -4,-7 0.8175 - 18.0 PRINCIPAL:1 ENSMUSG00000056014 A430033K04Rik ENSMUST00000198958 ENSMUSP00000142904 TRANSLATION protein_coding - - 1 649.0 30.0 2.28712 0.0 195.2 0.0 -4,-7 0.0742 - 10.254 MINOR ENSMUSG00000029416 Slc15a4 ENSMUST00000182841 - NO_TRANSLATION retained_intron ENSMUSG00000029416 Slc15a4 ENSMUST00000153832 ENSMUSP00000123116 TRANSLATION nonsense_mediated_decay - - 1 296.0 0.0 1.445 0.0 181.3 11.0 -4,0 0.0035 3 -2.0 MINOR ENSMUSG00000029416 Slc15a4 ENSMUST00000200212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029416 Slc15a4 ENSMUST00000199810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029416 Slc15a4 ENSMUST00000152727 ENSMUSP00000116529 TRANSLATION protein_coding stop - 3 81.0 0.0 1.2 0.0 73.4 3.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029416 Slc15a4 ENSMUST00000198486 ENSMUSP00000142476 TRANSLATION protein_coding start/stop - 3 169.0 0.0 2.232 0.0 127.5 7.0 -4,-7 0.005 1 -2.0 MINOR ENSMUSG00000029416 Slc15a4 ENSMUST00000031367 ENSMUSP00000031367 TRANSLATION protein_coding - CCDS19688.1 1 574.0 0.0 4.473 1.6 416.7 19.0 -4,0 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000029416 Slc15a4 ENSMUST00000124569 ENSMUSP00000121595 TRANSLATION nonsense_mediated_decay start - 5 246.0 0.0 1.16 0.0 180.1 11.0 -4,-6 0.0029 2 -2.0 MINOR ENSMUSG00000029416 Slc15a4 ENSMUST00000198727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029416 Slc15a4 ENSMUST00000155321 ENSMUSP00000117258 TRANSLATION protein_coding stop - 3 105.0 0.0 0.6 0.0 117.2 5.0 -4,-7 0.0029 - -2.0 MINOR ENSMUSG00000029416 Slc15a4 ENSMUST00000144603 ENSMUSP00000116420 TRANSLATION nonsense_mediated_decay start - 3 127.0 0.0 1.18 0.0 122.8 5.0 -4,-7 0.0029 1 -2.0 MINOR ENSMUSG00000029269 Sult1b1 ENSMUST00000117455 ENSMUSP00000112679 TRANSLATION protein_coding - CCDS19391.1 5 299.0 19.0 7.0 23.7 303.3 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000029269 Sult1b1 ENSMUST00000120150 ENSMUSP00000112844 TRANSLATION protein_coding - CCDS19391.1 1 299.0 19.0 7.0 23.7 303.3 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000029269 Sult1b1 ENSMUST00000031199 ENSMUSP00000031199 TRANSLATION protein_coding - CCDS19391.1 1 299.0 19.0 7.0 23.7 303.3 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000029407 Uso1 ENSMUST00000202362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029407 Uso1 ENSMUST00000201380 - NO_TRANSLATION retained_intron ENSMUSG00000029407 Uso1 ENSMUST00000202155 ENSMUSP00000144592 TRANSLATION protein_coding - - 1 897.0 0.0 13.58 0.0 42.9 0.0 -4,-6 0.8046 32 6.0 PRINCIPAL:2 ENSMUSG00000029407 Uso1 ENSMUST00000031355 ENSMUSP00000031355 TRANSLATION protein_coding - CCDS39150.1 1 959.0 0.0 13.58 0.0 36.9 0.0 -4,-6 0.2851 37 6.0 ALTERNATIVE:2 ENSMUSG00000029407 Uso1 ENSMUST00000201642 ENSMUSP00000144165 TRANSLATION nonsense_mediated_decay - - 1 74.0 0.0 1.125 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000037313 Tacc3 ENSMUST00000138240 ENSMUSP00000115481 TRANSLATION protein_coding start - 3 136.0 0.0 3.25 0.0 0.0 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000037313 Tacc3 ENSMUST00000152847 ENSMUSP00000119560 TRANSLATION protein_coding stop - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0201 1 -2.0 MINOR ENSMUSG00000037313 Tacc3 ENSMUST00000114426 ENSMUSP00000110069 TRANSLATION protein_coding - CCDS39065.1 1 630.0 0.0 6.35 0.0 0.0 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:2 ENSMUSG00000037313 Tacc3 ENSMUST00000201633 ENSMUSP00000144567 TRANSLATION protein_coding stop - 2 206.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.035 - -2.0 MINOR ENSMUSG00000037313 Tacc3 ENSMUST00000139888 ENSMUSP00000117407 TRANSLATION protein_coding start - 3 158.0 0.0 4.08 0.0 0.0 0.0 -4,-5 0.0017 3 -2.0 MINOR ENSMUSG00000037313 Tacc3 ENSMUST00000074849 ENSMUSP00000074394 TRANSLATION protein_coding - CCDS80258.1 1 637.0 0.0 6.02 0.0 0.0 0.0 -4,-5 0.3933 5 5.34 ALTERNATIVE:2 ENSMUSG00000037313 Tacc3 ENSMUST00000139453 - NO_TRANSLATION retained_intron ENSMUSG00000037313 Tacc3 ENSMUST00000079534 ENSMUSP00000078491 TRANSLATION protein_coding - CCDS39065.1 1 630.0 0.0 6.35 0.0 0.0 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:2 ENSMUSG00000029512 Ulk1 ENSMUST00000197768 - NO_TRANSLATION retained_intron ENSMUSG00000029512 Ulk1 ENSMUST00000200099 - NO_TRANSLATION retained_intron ENSMUSG00000029512 Ulk1 ENSMUST00000198561 ENSMUSP00000143308 TRANSLATION nonsense_mediated_decay start - 5 86.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029512 Ulk1 ENSMUST00000200299 ENSMUSP00000143536 TRANSLATION protein_coding - CCDS84930.1 1 1057.0 19.0 8.32 0.4 314.7 0.0 -4,-5 0.4694 16 18.0 MINOR ENSMUSG00000029512 Ulk1 ENSMUST00000199568 - NO_TRANSLATION retained_intron ENSMUSG00000029512 Ulk1 ENSMUST00000031490 ENSMUSP00000031490 TRANSLATION protein_coding - CCDS19532.1 1 1051.0 19.0 8.32 4.7 314.7 0.0 -4,-5 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000029512 Ulk1 ENSMUST00000198470 - NO_TRANSLATION retained_intron ENSMUSG00000029512 Ulk1 ENSMUST00000199717 - NO_TRANSLATION retained_intron ENSMUSG00000029512 Ulk1 ENSMUST00000196440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029512 Ulk1 ENSMUST00000196094 ENSMUSP00000143380 TRANSLATION nonsense_mediated_decay start - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029512 Ulk1 ENSMUST00000196883 - NO_TRANSLATION retained_intron ENSMUSG00000029134 Plb1 ENSMUST00000201313 - NO_TRANSLATION retained_intron ENSMUSG00000029134 Plb1 ENSMUST00000202453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029134 Plb1 ENSMUST00000201578 - NO_TRANSLATION retained_intron ENSMUSG00000029134 Plb1 ENSMUST00000202220 ENSMUSP00000144040 TRANSLATION protein_coding - CCDS39060.1 5 1478.0 0.0 11.423 0.0 224.7 1.0 1,-2 1.0 29 12.0 PRINCIPAL:1 ENSMUSG00000029134 Plb1 ENSMUST00000202201 ENSMUSP00000144401 TRANSLATION protein_coding - - 1 778.0 0.0 8.505 0.0 83.3 0.0 1,-2 0.0091 14 0.162 MINOR ENSMUSG00000029134 Plb1 ENSMUST00000202687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029134 Plb1 ENSMUST00000200878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029134 Plb1 ENSMUST00000101376 ENSMUSP00000098927 TRANSLATION protein_coding - CCDS39060.1 5 1478.0 0.0 11.423 0.0 224.7 1.0 1,-2 1.0 29 12.0 PRINCIPAL:1 ENSMUSG00000029134 Plb1 ENSMUST00000202886 - NO_TRANSLATION retained_intron ENSMUSG00000048142 Nat8l ENSMUST00000056355 ENSMUSP00000059313 TRANSLATION protein_coding - CCDS19210.1 1 299.0 22.0 2.6 0.4 50.9 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000048142 Nat8l ENSMUST00000201041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029466 Anapc7 ENSMUST00000122010 ENSMUSP00000113928 TRANSLATION protein_coding - CCDS19649.1 5 565.0 0.0 10.0 31.0 33.7 0.0 -4,-6 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000029466 Anapc7 ENSMUST00000197993 - NO_TRANSLATION retained_intron ENSMUSG00000029466 Anapc7 ENSMUST00000119792 ENSMUSP00000112658 TRANSLATION protein_coding - - 1 503.0 0.0 9.5 1.0 33.5 0.0 -4,-6 0.0784 17 10.962 MINOR ENSMUSG00000029466 Anapc7 ENSMUST00000148266 - NO_TRANSLATION retained_intron ENSMUSG00000029466 Anapc7 ENSMUST00000031422 ENSMUSP00000031422 TRANSLATION protein_coding - CCDS19649.1 1 565.0 0.0 10.0 31.0 33.7 0.0 -4,-6 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000029466 Anapc7 ENSMUST00000154074 ENSMUSP00000123365 TRANSLATION protein_coding start - 3 58.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062077 Trim54 ENSMUST00000013771 ENSMUSP00000013771 TRANSLATION protein_coding - CCDS19173.1 1 366.0 15.0 2.98534 6.7 66.4 0.0 -4,-6 1.0 4 15.728 PRINCIPAL:4 ENSMUSG00000062077 Trim54 ENSMUST00000202769 ENSMUSP00000144629 TRANSLATION protein_coding - - 5 364.0 15.0 2.98534 7.6 66.4 0.0 -4,-6 0.8963 4 16.0 ALTERNATIVE:1 ENSMUSG00000070639 Lrrc8b ENSMUST00000112707 ENSMUSP00000108327 TRANSLATION protein_coding - CCDS39193.1 1 803.0 0.0 1.5 18.7 492.8 0.0 -4,-7 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000121596 ENSMUSG00000121596 ENSMUST00000249389 ENSMUSP00000159746 TRANSLATION protein_coding - - - 551.0 64.0 3.0 0.4 400.2 0.0 -4,-5 0.8089 - 18.0 PRINCIPAL:1 ENSMUSG00000121596 ENSMUSG00000121596 ENSMUST00000249388 ENSMUSP00000159745 TRANSLATION protein_coding - - - 74.0 0.0 1.1 0.0 76.9 0.0 -4,-5 0.0 - 2.202 MINOR ENSMUSG00000107283 Mpv17 ENSMUST00000201353 ENSMUSP00000144198 TRANSLATION protein_coding - CCDS19175.1 3 176.0 0.0 5.205 0.0 83.7 4.0 -4,-2 0.315 3 12.0 MINOR ENSMUSG00000107283 Mpv17 ENSMUST00000202241 ENSMUSP00000144119 TRANSLATION protein_coding - CCDS80249.1 3 178.0 0.0 5.205 30.0 77.9 3.0 -4,-2 1.0 3 15.586 PRINCIPAL:1 ENSMUSG00000107283 Mpv17 ENSMUST00000154241 ENSMUSP00000115292 TRANSLATION protein_coding - CCDS19175.1 1 176.0 0.0 5.205 0.0 83.7 4.0 -4,-2 0.315 3 12.0 MINOR ENSMUSG00000107283 Mpv17 ENSMUST00000202614 - NO_TRANSLATION retained_intron ENSMUSG00000107283 Mpv17 ENSMUST00000200744 ENSMUSP00000143843 TRANSLATION protein_coding - CCDS80248.1 2 165.0 0.0 4.875 5.4 50.7 3.0 -4,-2 0.1834 3 9.584 MINOR ENSMUSG00000107283 Mpv17 ENSMUST00000202375 - NO_TRANSLATION retained_intron ENSMUSG00000107283 Mpv17 ENSMUST00000201171 ENSMUSP00000144600 TRANSLATION protein_coding start - 3 105.0 0.0 3.33 0.0 69.2 4.0 -3,-1 0.0066 2 -2.0 MINOR ENSMUSG00000107283 Mpv17 ENSMUST00000201491 ENSMUSP00000144593 TRANSLATION protein_coding - - 2 162.0 0.0 4.455 0.0 56.7 3.0 -4,-2 0.0019 3 8.562 MINOR ENSMUSG00000107283 Mpv17 ENSMUST00000200864 ENSMUSP00000144331 TRANSLATION protein_coding - CCDS19175.1 3 176.0 0.0 5.205 0.0 83.7 4.0 -4,-2 0.315 3 12.0 MINOR ENSMUSG00000107283 Mpv17 ENSMUST00000200833 ENSMUSP00000144324 TRANSLATION protein_coding - - 5 170.0 0.0 4.075 0.0 0.0 2.0 -4,-2 0.0092 3 3.738 MINOR ENSMUSG00000107283 Mpv17 ENSMUST00000202836 - NO_TRANSLATION retained_intron ENSMUSG00000107283 Mpv17 ENSMUST00000202203 - NO_TRANSLATION retained_intron ENSMUSG00000029236 Nmu ENSMUST00000031146 ENSMUSP00000031146 TRANSLATION protein_coding - CCDS19362.1 1 174.0 0.0 0.0 5.0 46.7 0.0 0,-2 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000038525 Armc10 ENSMUST00000072896 ENSMUSP00000072669 TRANSLATION protein_coding - CCDS19104.1 1 306.0 0.0 4.59 8.3 340.2 0.0 -3,-6 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000038525 Armc10 ENSMUST00000148873 ENSMUSP00000120269 TRANSLATION protein_coding stop - 1 292.0 0.0 4.39 0.0 332.2 0.0 -3,-6 0.0202 7 -2.0 MINOR ENSMUSG00000038525 Armc10 ENSMUST00000146599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038525 Armc10 ENSMUST00000139521 - NO_TRANSLATION retained_intron ENSMUSG00000038525 Armc10 ENSMUST00000095495 ENSMUSP00000093149 TRANSLATION protein_coding - - 1 238.0 0.0 4.05 0.0 255.1 0.0 -3,-6 0.0002 4 5.814 MINOR ENSMUSG00000043733 Ptpn11 ENSMUST00000148871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043733 Ptpn11 ENSMUST00000054547 ENSMUSP00000058757 TRANSLATION protein_coding - CCDS39247.1 1 597.0 11.0 11.5 25.9 441.9 0.0 -4,-7 0.9423 25 17.308 PRINCIPAL:3 ENSMUSG00000043733 Ptpn11 ENSMUST00000100770 ENSMUSP00000098333 TRANSLATION protein_coding - CCDS51637.1 1 593.0 11.0 11.5 31.1 446.8 0.0 -4,-7 1.0 24 18.0 ALTERNATIVE:1 ENSMUSG00000043733 Ptpn11 ENSMUST00000148407 - NO_TRANSLATION retained_intron ENSMUSG00000029423 Piwil1 ENSMUST00000195959 ENSMUSP00000142386 TRANSLATION protein_coding - - 1 835.0 7.0 12.276 0.0 546.3 0.0 -4,-1 0.061 12 13.176 MINOR ENSMUSG00000029423 Piwil1 ENSMUST00000200192 ENSMUSP00000142807 TRANSLATION protein_coding stop - 1 493.0 0.0 6.05 0.0 224.0 0.0 -4,-2 0.0013 9 -2.0 MINOR ENSMUSG00000029423 Piwil1 ENSMUST00000086056 ENSMUSP00000083222 TRANSLATION protein_coding - CCDS19690.1 1 862.0 8.0 13.21 0.4 583.1 0.0 -4,-1 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000029103 Lrpap1 ENSMUST00000030986 ENSMUSP00000030986 TRANSLATION protein_coding - CCDS19225.1 1 360.0 0.0 8.43 1.1 373.2 0.0 0,-3 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000029103 Lrpap1 ENSMUST00000147028 - NO_TRANSLATION retained_intron ENSMUSG00000029103 Lrpap1 ENSMUST00000132754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029103 Lrpap1 ENSMUST00000153664 ENSMUSP00000120233 TRANSLATION protein_coding start - 3 153.0 0.0 4.0 0.0 150.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000029103 Lrpap1 ENSMUST00000152028 - NO_TRANSLATION retained_intron ENSMUSG00000029620 1700018F24Rik ENSMUST00000031624 ENSMUSP00000031624 TRANSLATION protein_coding - CCDS51696.1 1 314.0 0.0 2.5 0.0 32.4 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029618 Ocm ENSMUST00000085704 ENSMUSP00000082848 TRANSLATION protein_coding - CCDS51693.1 3 109.0 11.0 3.08 33.9 50.9 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000029618 Ocm ENSMUST00000031622 ENSMUSP00000031622 TRANSLATION protein_coding - CCDS51693.1 5 109.0 11.0 3.08 33.9 50.9 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000029618 Ocm ENSMUST00000110702 ENSMUSP00000106330 TRANSLATION protein_coding stop - 5 60.0 4.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043036 Ccdc63 ENSMUST00000198618 - NO_TRANSLATION retained_intron ENSMUSG00000043036 Ccdc63 ENSMUST00000152389 ENSMUSP00000114143 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0309 - -2.0 MINOR ENSMUSG00000043036 Ccdc63 ENSMUST00000196608 - NO_TRANSLATION retained_intron ENSMUSG00000043036 Ccdc63 ENSMUST00000132701 ENSMUSP00000114311 TRANSLATION protein_coding - CCDS39253.1 5 582.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.2856 2 0.0 MINOR ENSMUSG00000043036 Ccdc63 ENSMUST00000128101 ENSMUSP00000114804 TRANSLATION protein_coding - - 5 561.0 0.0 0.0 6.1 0.0 0.0 -4,-7 1.0 2 2.0 PRINCIPAL:1 ENSMUSG00000043036 Ccdc63 ENSMUST00000146235 - NO_TRANSLATION retained_intron ENSMUSG00000043036 Ccdc63 ENSMUST00000058960 ENSMUSP00000050582 TRANSLATION protein_coding - CCDS39253.1 1 582.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.2856 2 0.0 MINOR ENSMUSG00000114278 Gm49027 ENSMUST00000197682 ENSMUSP00000143145 TRANSLATION protein_coding - - 5 44.0 0.0 1.0 0.0 0.0 0.0 -1,-5 0.7008 - 6.0 PRINCIPAL:1 ENSMUSG00000114278 Gm49027 ENSMUST00000198565 ENSMUSP00000152978 TRANSLATION protein_coding - - 3 44.0 0.0 1.0 0.0 0.0 0.0 -1,-5 0.7008 - 6.0 PRINCIPAL:1 ENSMUSG00000029575 Mmab ENSMUST00000031560 ENSMUSP00000031560 TRANSLATION protein_coding - CCDS19565.1 1 237.0 13.0 6.1 4.5 203.0 0.0 -4,0 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000029575 Mmab ENSMUST00000112245 ENSMUSP00000107864 TRANSLATION protein_coding - CCDS84938.1 3 180.0 13.0 4.35 0.0 127.4 0.0 -4,0 0.0004 6 9.966 MINOR ENSMUSG00000029575 Mmab ENSMUST00000123256 ENSMUSP00000142979 TRANSLATION protein_coding - - 1 257.0 13.0 5.35 0.0 178.0 0.0 -4,0 0.0011 9 15.0 MINOR ENSMUSG00000029209 Gnpda2 ENSMUST00000139632 ENSMUSP00000121014 TRANSLATION nonsense_mediated_decay - CCDS19324.1 5 276.0 15.0 5.5 30.8 73.8 0.0 -4,-5 1.0 8 -2.0 MINOR ENSMUSG00000029209 Gnpda2 ENSMUST00000153536 ENSMUSP00000121441 TRANSLATION nonsense_mediated_decay - - 3 48.0 0.0 1.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029209 Gnpda2 ENSMUST00000173927 ENSMUSP00000133490 TRANSLATION protein_coding - CCDS84888.1 5 274.0 15.0 5.5 30.8 62.4 0.0 -4,-5 0.9373 8 18.0 ALTERNATIVE:1 ENSMUSG00000029209 Gnpda2 ENSMUST00000120789 ENSMUSP00000112484 TRANSLATION protein_coding - - 1 270.0 15.0 5.1 3.0 73.8 0.0 -4,-5 0.2152 7 13.47 MINOR ENSMUSG00000029209 Gnpda2 ENSMUST00000031117 ENSMUSP00000031117 TRANSLATION protein_coding - CCDS19324.1 1 276.0 15.0 5.5 30.8 73.8 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:4 ENSMUSG00000029209 Gnpda2 ENSMUST00000166298 ENSMUSP00000128233 TRANSLATION protein_coding - CCDS84888.1 5 274.0 15.0 5.5 30.8 62.4 0.0 -4,-5 0.9373 8 18.0 ALTERNATIVE:1 ENSMUSG00000029209 Gnpda2 ENSMUST00000154018 - NO_TRANSLATION retained_intron ENSMUSG00000060261 Gtf2i ENSMUST00000174182 - NO_TRANSLATION retained_intron ENSMUSG00000060261 Gtf2i ENSMUST00000172953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060261 Gtf2i ENSMUST00000082057 ENSMUSP00000080714 TRANSLATION protein_coding - CCDS39300.1 5 977.0 0.0 12.945 7.3 620.2 0.0 -4,-5 0.9011 31 10.553 ALTERNATIVE:1 ENSMUSG00000060261 Gtf2i ENSMUST00000202343 - NO_TRANSLATION retained_intron ENSMUSG00000060261 Gtf2i ENSMUST00000173504 ENSMUSP00000134042 TRANSLATION protein_coding stop - 5 150.0 0.0 1.75 0.0 47.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000060261 Gtf2i ENSMUST00000174513 ENSMUSP00000133489 TRANSLATION protein_coding - CCDS57386.1 2 958.0 0.0 12.945 7.3 620.2 0.0 -4,-5 0.8538 31 10.553 ALTERNATIVE:1 ENSMUSG00000060261 Gtf2i ENSMUST00000173651 ENSMUSP00000133375 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060261 Gtf2i ENSMUST00000172904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060261 Gtf2i ENSMUST00000174354 ENSMUSP00000134440 TRANSLATION protein_coding - CCDS39299.1 2 979.0 0.0 12.945 7.3 620.2 0.0 -4,-5 0.9008 31 10.553 ALTERNATIVE:1 ENSMUSG00000060261 Gtf2i ENSMUST00000173485 ENSMUSP00000133526 TRANSLATION protein_coding start - 3 167.0 0.0 2.08 0.0 88.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000060261 Gtf2i ENSMUST00000173887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060261 Gtf2i ENSMUST00000174003 - NO_TRANSLATION retained_intron ENSMUSG00000060261 Gtf2i ENSMUST00000173341 ENSMUSP00000133444 TRANSLATION protein_coding - CCDS57387.1 1 962.0 0.0 12.945 7.3 620.2 0.0 -4,-5 0.8549 32 10.553 PRINCIPAL:3 ENSMUSG00000060261 Gtf2i ENSMUST00000201371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060261 Gtf2i ENSMUST00000174867 ENSMUSP00000133435 TRANSLATION protein_coding stop - 3 169.0 0.0 2.41 0.0 84.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000060261 Gtf2i ENSMUST00000174133 ENSMUSP00000134111 TRANSLATION protein_coding start/stop - 5 437.0 0.0 7.115 0.0 292.1 0.0 -3,-6 0.0 16 -2.0 MINOR ENSMUSG00000060261 Gtf2i ENSMUST00000172553 - NO_TRANSLATION retained_intron ENSMUSG00000060261 Gtf2i ENSMUST00000174155 ENSMUSP00000133566 TRANSLATION protein_coding - CCDS39301.1 2 998.0 0.0 12.945 8.4 620.2 0.0 -4,-5 1.0 31 11.0 ALTERNATIVE:1 ENSMUSG00000060261 Gtf2i ENSMUST00000172715 ENSMUSP00000134035 TRANSLATION protein_coding - - 5 913.0 0.0 12.945 0.4 620.2 0.0 -4,-5 0.2 31 8.0 MINOR ENSMUSG00000060261 Gtf2i ENSMUST00000174773 - NO_TRANSLATION retained_intron ENSMUSG00000060261 Gtf2i ENSMUST00000111261 ENSMUSP00000106892 TRANSLATION protein_coding - CCDS39299.1 5 979.0 0.0 12.945 7.3 620.2 0.0 -4,-5 0.9008 31 10.553 ALTERNATIVE:1 ENSMUSG00000060261 Gtf2i ENSMUST00000059042 ENSMUSP00000049625 TRANSLATION protein_coding - CCDS39301.1 1 998.0 0.0 12.945 8.4 620.2 0.0 -4,-5 1.0 31 11.0 ALTERNATIVE:1 ENSMUSG00000060261 Gtf2i ENSMUST00000174772 ENSMUSP00000133740 TRANSLATION protein_coding - CCDS39300.1 2 977.0 0.0 12.945 7.3 620.2 0.0 -4,-5 0.9011 31 10.553 ALTERNATIVE:1 ENSMUSG00000060261 Gtf2i ENSMUST00000173263 ENSMUSP00000133905 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060261 Gtf2i ENSMUST00000174188 ENSMUSP00000134636 TRANSLATION protein_coding stop - 3 159.0 0.0 2.08 0.0 67.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000060261 Gtf2i ENSMUST00000173888 ENSMUSP00000133969 TRANSLATION protein_coding - - 5 939.0 0.0 12.945 1.1 620.2 0.0 -4,-5 0.2206 31 8.042 MINOR ENSMUSG00000060261 Gtf2i ENSMUST00000173509 - NO_TRANSLATION retained_intron ENSMUSG00000060261 Gtf2i ENSMUST00000172600 - NO_TRANSLATION retained_intron ENSMUSG00000042744 Hectd4 ENSMUST00000130655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042744 Hectd4 ENSMUST00000100769 ENSMUSP00000098332 TRANSLATION protein_coding start - 1 1014.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0123 19 -2.0 MINOR ENSMUSG00000042744 Hectd4 ENSMUST00000042614 ENSMUSP00000048345 TRANSLATION protein_coding - CCDS57377.1 5 4418.0 0.0 3.835 1.9 133.5 0.0 -1,-4 1.0 87 13.0 PRINCIPAL:1 ENSMUSG00000042744 Hectd4 ENSMUST00000201669 ENSMUSP00000144313 TRANSLATION protein_coding start/stop - 5 678.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0051 11 -2.0 MINOR ENSMUSG00000042744 Hectd4 ENSMUST00000155743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042744 Hectd4 ENSMUST00000148368 ENSMUSP00000114491 TRANSLATION protein_coding start/stop - 5 221.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 3 -2.0 MINOR ENSMUSG00000042744 Hectd4 ENSMUST00000128514 - NO_TRANSLATION retained_intron ENSMUSG00000029535 Triap1 ENSMUST00000031508 ENSMUSP00000031508 TRANSLATION protein_coding - CCDS39228.1 1 76.0 0.0 1.75 27.2 92.6 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000045302 Preb ENSMUST00000202567 ENSMUSP00000144263 TRANSLATION protein_coding - CCDS80244.1 1 350.0 0.0 5.76 3.0 22.0 0.0 -4,-2 0.221 11 10.46 MINOR ENSMUSG00000045302 Preb ENSMUST00000202930 - NO_TRANSLATION retained_intron ENSMUSG00000045302 Preb ENSMUST00000202593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045302 Preb ENSMUST00000074840 ENSMUSP00000074387 TRANSLATION protein_coding - CCDS39051.1 1 417.0 0.0 6.859 13.2 22.0 1.0 -4,-2 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000045302 Preb ENSMUST00000202590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045302 Preb ENSMUST00000202472 - NO_TRANSLATION retained_intron ENSMUSG00000045302 Preb ENSMUST00000202445 - NO_TRANSLATION retained_intron ENSMUSG00000045302 Preb ENSMUST00000201002 ENSMUSP00000143990 TRANSLATION protein_coding start - 3 186.0 0.0 2.88 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000045302 Preb ENSMUST00000201821 ENSMUSP00000144321 TRANSLATION protein_coding start - 3 95.0 0.0 1.13 0.0 22.0 0.0 -4,-5 0.014 3 -2.0 MINOR ENSMUSG00000045302 Preb ENSMUST00000200756 - NO_TRANSLATION retained_intron ENSMUSG00000045302 Preb ENSMUST00000201730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045302 Preb ENSMUST00000202904 - NO_TRANSLATION retained_intron ENSMUSG00000045302 Preb ENSMUST00000200836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066621 Tecpr1 ENSMUST00000196360 - NO_TRANSLATION retained_intron ENSMUSG00000066621 Tecpr1 ENSMUST00000137149 - NO_TRANSLATION retained_intron ENSMUSG00000066621 Tecpr1 ENSMUST00000136018 - NO_TRANSLATION retained_intron ENSMUSG00000066621 Tecpr1 ENSMUST00000153751 - NO_TRANSLATION retained_intron ENSMUSG00000066621 Tecpr1 ENSMUST00000140524 - NO_TRANSLATION retained_intron ENSMUSG00000066621 Tecpr1 ENSMUST00000085701 ENSMUSP00000082844 TRANSLATION protein_coding - CCDS39377.1 1 1166.0 0.0 2.8 2.1 268.3 0.0 -2,-7 1.0 24 13.0 PRINCIPAL:1 ENSMUSG00000066621 Tecpr1 ENSMUST00000151479 - NO_TRANSLATION retained_intron ENSMUSG00000066621 Tecpr1 ENSMUST00000130962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066621 Tecpr1 ENSMUST00000156129 - NO_TRANSLATION retained_intron ENSMUSG00000066621 Tecpr1 ENSMUST00000153103 - NO_TRANSLATION retained_intron ENSMUSG00000066621 Tecpr1 ENSMUST00000147992 - NO_TRANSLATION retained_intron ENSMUSG00000066621 Tecpr1 ENSMUST00000125672 - NO_TRANSLATION retained_intron ENSMUSG00000073119 Speer4a ENSMUST00000079447 ENSMUSP00000078415 TRANSLATION protein_coding - CCDS51441.1 1 267.0 0.0 2.05 0.0 84.9 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029310 Nudt9 ENSMUST00000134313 ENSMUSP00000117181 TRANSLATION protein_coding stop - 5 152.0 2.0 3.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029310 Nudt9 ENSMUST00000148261 ENSMUSP00000115170 TRANSLATION protein_coding stop - 5 109.0 0.0 2.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029310 Nudt9 ENSMUST00000128511 ENSMUSP00000119820 TRANSLATION protein_coding stop - 5 158.0 3.0 4.08 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000029310 Nudt9 ENSMUST00000031250 ENSMUSP00000031250 TRANSLATION protein_coding - CCDS19482.1 1 350.0 14.0 6.83 0.0 32.9 0.0 -1,0 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000029310 Nudt9 ENSMUST00000150226 ENSMUSP00000114631 TRANSLATION protein_coding stop - 5 213.0 7.0 5.08 0.0 30.2 0.0 -4,-6 0.0019 3 -2.0 MINOR ENSMUSG00000029310 Nudt9 ENSMUST00000142018 - NO_TRANSLATION retained_intron ENSMUSG00000029280 Smr3a ENSMUST00000031211 ENSMUSP00000031211 TRANSLATION protein_coding - CCDS19398.1 1 147.0 0.0 0.0 0.0 86.8 0.0 1,-2 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000029280 Smr3a ENSMUST00000189633 ENSMUSP00000139852 TRANSLATION protein_coding - - 5 64.0 0.0 0.0 0.0 76.9 0.0 1,-2 0.0098 - 0.0 MINOR ENSMUSG00000029125 Stx18 ENSMUST00000147667 - NO_TRANSLATION retained_intron ENSMUSG00000029125 Stx18 ENSMUST00000201285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029125 Stx18 ENSMUST00000114126 ENSMUSP00000109761 TRANSLATION protein_coding - CCDS19250.1 1 334.0 0.0 0.0 12.2 75.4 1.0 -4,-7 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000029125 Stx18 ENSMUST00000141286 - NO_TRANSLATION retained_intron ENSMUSG00000029125 Stx18 ENSMUST00000154929 ENSMUSP00000118218 TRANSLATION protein_coding stop - 5 252.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 3 -2.0 MINOR ENSMUSG00000029125 Stx18 ENSMUST00000031008 ENSMUSP00000031008 TRANSLATION protein_coding - CCDS71583.1 1 308.0 0.0 0.0 0.0 75.4 0.0 -4,-7 0.1383 6 6.0 MINOR ENSMUSG00000029125 Stx18 ENSMUST00000146864 ENSMUSP00000143909 TRANSLATION protein_coding stop - 3 181.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029125 Stx18 ENSMUST00000202412 ENSMUSP00000144088 TRANSLATION protein_coding stop - 3 104.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029125 Stx18 ENSMUST00000042146 ENSMUSP00000038205 TRANSLATION protein_coding - CCDS80270.1 1 308.0 0.0 0.0 1.0 75.4 1.0 -4,-7 0.2213 5 6.0 MINOR ENSMUSG00000029373 Pf4 ENSMUST00000031320 ENSMUSP00000031320 TRANSLATION protein_coding - CCDS19416.1 1 105.0 0.0 1.882 2.4 49.1 0.0 2,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000029373 Pf4 ENSMUST00000201990 - NO_TRANSLATION retained_intron ENSMUSG00000029373 Pf4 ENSMUST00000202625 ENSMUSP00000143818 TRANSLATION protein_coding - - 2 77.0 0.0 1.132 0.0 0.0 0.0 2,-2 0.0028 1 3.606 MINOR ENSMUSG00000029198 Grpel1 ENSMUST00000031099 ENSMUSP00000031099 TRANSLATION protein_coding - CCDS19238.1 1 217.0 0.0 2.25 14.0 147.9 0.0 -2,2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000037962 Rflna ENSMUST00000197746 ENSMUSP00000142824 TRANSLATION protein_coding - CCDS19682.1 1 204.0 0.0 1.0 0.1 254.0 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000037962 Rflna ENSMUST00000145946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037962 Rflna ENSMUST00000036109 ENSMUSP00000048230 TRANSLATION protein_coding - CCDS19682.1 5 204.0 0.0 1.0 0.1 254.0 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000029111 Nelfa ENSMUST00000132942 - NO_TRANSLATION retained_intron ENSMUSG00000029111 Nelfa ENSMUST00000030993 ENSMUSP00000030993 TRANSLATION protein_coding - CCDS19208.1 1 530.0 0.0 3.4 8.3 0.0 0.0 -4,-5 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000073208 Speer4c ENSMUST00000179506 ENSMUSP00000136269 TRANSLATION protein_coding stop - 1 137.0 0.0 1.25 0.0 101.5 0.0 -4,-7 0.0311 - -2.0 MINOR ENSMUSG00000073208 Speer4c ENSMUST00000095005 ENSMUSP00000133641 TRANSLATION protein_coding - CCDS59669.1 1 256.0 0.0 2.58 0.0 101.5 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029171 Pgm2 ENSMUST00000129152 - NO_TRANSLATION retained_intron ENSMUSG00000029171 Pgm2 ENSMUST00000199093 ENSMUSP00000143020 TRANSLATION nonsense_mediated_decay start - 5 76.0 3.0 1.75 0.0 58.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029171 Pgm2 ENSMUST00000087324 ENSMUSP00000084582 TRANSLATION protein_coding - CCDS19300.1 1 620.0 14.0 14.6 0.1 248.6 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000029171 Pgm2 ENSMUST00000197577 ENSMUSP00000143375 TRANSLATION protein_coding start - 3 33.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039968 Rsbn1l ENSMUST00000196780 ENSMUSP00000142789 TRANSLATION protein_coding - - 1 616.0 0.0 0.12 0.0 0.0 0.0 -4,-5 0.055 6 2.25 MINOR ENSMUSG00000039968 Rsbn1l ENSMUST00000036489 ENSMUSP00000039482 TRANSLATION protein_coding - CCDS39020.1 5 821.0 0.0 0.32 0.0 0.0 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000039968 Rsbn1l ENSMUST00000197493 - NO_TRANSLATION retained_intron ENSMUSG00000039968 Rsbn1l ENSMUST00000197089 ENSMUSP00000142461 TRANSLATION protein_coding stop - 1 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.018 - -2.0 MINOR ENSMUSG00000029641 Rasl11a ENSMUST00000249135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029641 Rasl11a ENSMUST00000198570 - NO_TRANSLATION retained_intron ENSMUSG00000029641 Rasl11a ENSMUST00000031646 ENSMUSP00000031646 TRANSLATION protein_coding - CCDS39396.1 1 242.0 15.0 2.2 15.7 107.7 0.0 -3,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000029474 Rnf34 ENSMUST00000198602 ENSMUSP00000143603 TRANSLATION protein_coding stop - 2 105.0 6.0 0.8 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029474 Rnf34 ENSMUST00000031434 ENSMUSP00000031434 TRANSLATION protein_coding - CCDS19656.1 1 376.0 16.0 1.48 8.5 43.5 0.0 -2,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000038859 Baiap2l1 ENSMUST00000129287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038859 Baiap2l1 ENSMUST00000055190 ENSMUSP00000053129 TRANSLATION protein_coding - CCDS39378.1 1 514.0 0.0 6.75 9.3 252.6 0.0 -4,-5 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000038056 Kmt2c ENSMUST00000172626 - NO_TRANSLATION retained_intron ENSMUSG00000038056 Kmt2c ENSMUST00000172556 ENSMUSP00000133941 TRANSLATION protein_coding start - 5 1748.0 26.0 5.8 0.0 270.5 0.0 -4,-5 0.0325 7 -2.0 MINOR ENSMUSG00000038056 Kmt2c ENSMUST00000172707 - NO_TRANSLATION retained_intron ENSMUSG00000038056 Kmt2c ENSMUST00000173174 ENSMUSP00000133304 TRANSLATION protein_coding stop - 1 813.0 28.0 2.165 0.0 74.7 0.0 -4,-5 0.0085 3 -2.0 MINOR ENSMUSG00000038056 Kmt2c ENSMUST00000173073 ENSMUSP00000134442 TRANSLATION protein_coding stop - 5 1716.0 53.0 8.515 0.0 114.5 0.0 -4,-5 0.032 5 -2.0 MINOR ENSMUSG00000038056 Kmt2c ENSMUST00000174734 ENSMUSP00000133482 TRANSLATION protein_coding start - 5 1524.0 26.0 4.8 0.0 270.5 0.0 -4,-5 0.0276 7 -2.0 MINOR ENSMUSG00000038056 Kmt2c ENSMUST00000045291 ENSMUSP00000043874 TRANSLATION protein_coding - CCDS39033.1 5 4904.0 79.0 14.315 0.0 385.0 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000038056 Kmt2c ENSMUST00000173673 - NO_TRANSLATION retained_intron ENSMUSG00000025537 Phkg1 ENSMUST00000026617 ENSMUSP00000026617 TRANSLATION protein_coding - CCDS19701.1 1 388.0 19.0 7.33 22.2 252.7 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000025537 Phkg1 ENSMUST00000154495 - NO_TRANSLATION retained_intron ENSMUSG00000025537 Phkg1 ENSMUST00000200922 - NO_TRANSLATION retained_intron ENSMUSG00000025537 Phkg1 ENSMUST00000140667 ENSMUSP00000117510 TRANSLATION protein_coding stop - 5 143.0 14.0 3.5 0.0 86.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025537 Phkg1 ENSMUST00000154932 ENSMUSP00000122040 TRANSLATION protein_coding stop - 5 95.0 7.0 2.75 0.0 110.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025537 Phkg1 ENSMUST00000200832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035946 Gsx2 ENSMUST00000040477 ENSMUSP00000036625 TRANSLATION protein_coding - CCDS19350.1 1 305.0 0.0 1.3 9.0 76.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035946 Gsx2 ENSMUST00000160104 ENSMUSP00000123712 TRANSLATION protein_coding - - 1 134.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000029096 Htra3 ENSMUST00000129459 ENSMUSP00000144550 TRANSLATION protein_coding stop - 2 53.0 3.0 1.33 0.0 28.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029096 Htra3 ENSMUST00000114233 ENSMUSP00000109871 TRANSLATION protein_coding - CCDS39071.1 1 363.0 7.0 7.67 0.1 171.3 0.0 4,-1 0.0537 3 11.4 MINOR ENSMUSG00000029096 Htra3 ENSMUST00000201028 ENSMUSP00000144597 TRANSLATION nonsense_mediated_decay start - 5 59.0 0.0 0.925 0.0 34.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029096 Htra3 ENSMUST00000137935 ENSMUSP00000144051 TRANSLATION protein_coding stop - 3 41.0 2.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029096 Htra3 ENSMUST00000200810 - NO_TRANSLATION retained_intron ENSMUSG00000029096 Htra3 ENSMUST00000087629 ENSMUSP00000084910 TRANSLATION protein_coding - CCDS19233.1 1 459.0 7.0 9.84 0.1 209.0 0.0 4,-1 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000029389 Ddx55 ENSMUST00000144433 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029389 Ddx55 ENSMUST00000111438 ENSMUSP00000107065 TRANSLATION protein_coding - CCDS57380.1 2 596.0 13.0 7.52 10.7 298.3 0.0 -4,-5 0.9703 7 17.0 ALTERNATIVE:1 ENSMUSG00000029389 Ddx55 ENSMUST00000142451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029389 Ddx55 ENSMUST00000131631 ENSMUSP00000143462 TRANSLATION nonsense_mediated_decay - - 1 135.0 11.0 1.7 0.0 47.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029389 Ddx55 ENSMUST00000196021 - NO_TRANSLATION retained_intron ENSMUSG00000029389 Ddx55 ENSMUST00000071057 ENSMUSP00000070279 TRANSLATION protein_coding - CCDS39281.1 1 600.0 13.0 7.52 10.7 298.3 0.0 -4,-5 1.0 8 17.0 PRINCIPAL:3 ENSMUSG00000029389 Ddx55 ENSMUST00000136067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029651 Mtus2 ENSMUST00000085558 ENSMUSP00000082694 TRANSLATION protein_coding - CCDS19881.1 1 1353.0 0.0 8.85 0.0 0.0 0.0 -4,-6 0.3998 21 6.0 MINOR ENSMUSG00000029651 Mtus2 ENSMUST00000110515 ENSMUSP00000106144 TRANSLATION protein_coding - - 1 348.0 2.0 8.35 16.5 0.0 0.0 -4,-5 1.0 8 10.998 PRINCIPAL:1 ENSMUSG00000029651 Mtus2 ENSMUST00000085554 ENSMUSP00000082690 TRANSLATION protein_coding - - 1 152.0 0.0 3.132 0.0 0.0 0.0 -4,-6 0.0016 2 0.0 MINOR ENSMUSG00000029651 Mtus2 ENSMUST00000201594 - NO_TRANSLATION retained_intron ENSMUSG00000029651 Mtus2 ENSMUST00000149336 - NO_TRANSLATION retained_intron ENSMUSG00000029651 Mtus2 ENSMUST00000128423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029651 Mtus2 ENSMUST00000071878 ENSMUSP00000071775 TRANSLATION protein_coding - - 1 205.0 2.0 3.6 0.0 0.0 0.0 -4,-5 0.0066 4 2.0 MINOR ENSMUSG00000029651 Mtus2 ENSMUST00000110514 ENSMUSP00000106143 TRANSLATION protein_coding - - 5 315.0 2.0 7.35 0.0 0.0 0.0 -4,-5 0.0165 7 5.0 MINOR ENSMUSG00000029651 Mtus2 ENSMUST00000129092 ENSMUSP00000120449 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0177 - -2.0 MINOR ENSMUSG00000029651 Mtus2 ENSMUST00000152105 ENSMUSP00000123055 TRANSLATION protein_coding stop - 3 170.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0012 2 -2.0 MINOR ENSMUSG00000029651 Mtus2 ENSMUST00000146425 ENSMUSP00000119851 TRANSLATION nonsense_mediated_decay - - 5 42.0 2.0 0.1 0.0 0.0 0.0 -4,-6 0.0099 - -2.0 MINOR ENSMUSG00000029468 P2rx7 ENSMUST00000086247 ENSMUSP00000083425 TRANSLATION protein_coding - CCDS19653.1 1 153.0 0.0 2.91 0.0 126.9 2.0 -4,-6 0.003 - 0.0 MINOR ENSMUSG00000029468 P2rx7 ENSMUST00000031425 ENSMUSP00000031425 TRANSLATION protein_coding - CCDS19651.1 1 442.0 0.0 11.0 0.0 519.5 5.0 -4,-6 0.1642 7 11.598 MINOR ENSMUSG00000029468 P2rx7 ENSMUST00000197102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029468 P2rx7 ENSMUST00000197042 - NO_TRANSLATION retained_intron ENSMUSG00000029468 P2rx7 ENSMUST00000121489 ENSMUSP00000112440 TRANSLATION protein_coding - CCDS51644.1 1 431.0 0.0 11.0 1.1 519.5 5.0 -4,-6 0.3014 7 11.634 MINOR ENSMUSG00000029468 P2rx7 ENSMUST00000199371 ENSMUSP00000158311 TRANSLATION protein_coding - - 1 592.0 0.0 10.6 1.1 495.4 4.0 -4,-7 0.1105 12 9.39 MINOR ENSMUSG00000029468 P2rx7 ENSMUST00000199281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029468 P2rx7 ENSMUST00000100737 ENSMUSP00000098303 TRANSLATION protein_coding - CCDS19652.1 1 595.0 0.0 11.2 9.2 519.5 5.0 -4,-6 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000019295 Tmem129 ENSMUST00000019439 ENSMUSP00000019439 TRANSLATION protein_coding - CCDS19206.1 1 362.0 7.0 0.0 28.9 474.9 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000019295 Tmem129 ENSMUST00000125527 - NO_TRANSLATION retained_intron ENSMUSG00000019295 Tmem129 ENSMUST00000200849 ENSMUSP00000144662 TRANSLATION protein_coding - - 3 74.0 5.0 0.0 0.0 116.5 0.0 -4,-7 0.0004 1 4.284 MINOR ENSMUSG00000019295 Tmem129 ENSMUST00000140931 - NO_TRANSLATION retained_intron ENSMUSG00000029452 Tmem116 ENSMUST00000149966 ENSMUSP00000116328 TRANSLATION protein_coding stop - 5 131.0 0.0 1.9 0.0 0.0 4.0 -4,-7 0.018 1 -2.0 MINOR ENSMUSG00000029452 Tmem116 ENSMUST00000031405 ENSMUSP00000031405 TRANSLATION protein_coding - CCDS51641.1 1 329.0 0.0 3.03 2.2 0.0 8.0 -4,-7 0.3767 2 6.435 MINOR ENSMUSG00000029452 Tmem116 ENSMUST00000124247 ENSMUSP00000134334 TRANSLATION nonsense_mediated_decay start - 1 121.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0223 - -2.0 MINOR ENSMUSG00000029452 Tmem116 ENSMUST00000145729 ENSMUSP00000144269 TRANSLATION nonsense_mediated_decay start - 2 104.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0183 - -2.0 MINOR ENSMUSG00000029452 Tmem116 ENSMUST00000172722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029452 Tmem116 ENSMUST00000060004 ENSMUSP00000054232 TRANSLATION protein_coding - CCDS19635.1 1 209.0 0.0 3.03 0.7 0.0 4.0 -4,-7 0.2382 2 6.0 MINOR ENSMUSG00000029452 Tmem116 ENSMUST00000111795 ENSMUSP00000144614 TRANSLATION protein_coding - - 1 152.0 0.0 2.23 0.0 0.0 4.0 -4,-7 0.017 1 4.398 MINOR ENSMUSG00000029452 Tmem116 ENSMUST00000156080 ENSMUSP00000121579 TRANSLATION protein_coding - - 1 146.0 0.0 1.4 0.0 0.0 2.0 -4,-7 0.0159 1 2.742 MINOR ENSMUSG00000029452 Tmem116 ENSMUST00000150805 ENSMUSP00000143523 TRANSLATION protein_coding start - 1 401.0 0.0 3.03 0.0 0.0 7.0 -4,-2 0.0791 2 -2.0 MINOR ENSMUSG00000029452 Tmem116 ENSMUST00000094357 ENSMUSP00000091917 TRANSLATION protein_coding - CCDS51640.1 5 364.0 0.0 3.03 9.3 0.0 9.0 -4,-7 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000062761 Zfp512 ENSMUST00000202244 ENSMUSP00000143860 TRANSLATION protein_coding - - 1 506.0 13.0 2.446 0.0 0.0 0.0 -4,-2 0.004 9 6.882 MINOR ENSMUSG00000062761 Zfp512 ENSMUST00000200782 ENSMUSP00000143874 TRANSLATION protein_coding start/stop - 3 222.0 16.0 2.644 0.0 20.3 0.0 -4,-6 0.0563 4 -2.0 MINOR ENSMUSG00000062761 Zfp512 ENSMUST00000076264 ENSMUSP00000075613 TRANSLATION protein_coding - CCDS19183.1 1 562.0 20.0 2.644 1.5 21.6 0.0 -4,-2 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000062761 Zfp512 ENSMUST00000201945 - NO_TRANSLATION retained_intron ENSMUSG00000062761 Zfp512 ENSMUST00000202061 ENSMUSP00000143978 TRANSLATION protein_coding stop - 2 72.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000062761 Zfp512 ENSMUST00000201859 - NO_TRANSLATION retained_intron ENSMUSG00000062761 Zfp512 ENSMUST00000201450 ENSMUSP00000144433 TRANSLATION protein_coding stop - 5 226.0 12.0 1.08 0.0 20.3 0.0 -4,-2 0.0276 4 -2.0 MINOR ENSMUSG00000062761 Zfp512 ENSMUST00000201599 - NO_TRANSLATION retained_intron ENSMUSG00000034173 Zbed5 ENSMUST00000041466 ENSMUSP00000044533 TRANSLATION protein_coding - CCDS39292.1 1 756.0 4.0 1.0 0.1 0.0 0.0 -3,1 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000034173 Zbed5 ENSMUST00000077320 ENSMUSP00000116455 TRANSLATION protein_coding stop - 3 183.0 2.0 1.0 0.0 0.0 0.0 -3,1 0.094 - -2.0 MINOR ENSMUSG00000034173 Zbed5 ENSMUST00000202430 - NO_TRANSLATION retained_intron ENSMUSG00000038552 Fndc4 ENSMUST00000200845 - NO_TRANSLATION retained_intron ENSMUSG00000038552 Fndc4 ENSMUST00000201906 - NO_TRANSLATION retained_intron ENSMUSG00000038552 Fndc4 ENSMUST00000202158 ENSMUSP00000144229 TRANSLATION nonsense_mediated_decay start - 5 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038552 Fndc4 ENSMUST00000202615 ENSMUSP00000144195 TRANSLATION protein_coding stop - 5 220.0 0.0 2.3 0.0 46.1 1.0 0,-4 0.0824 - -2.0 MINOR ENSMUSG00000038552 Fndc4 ENSMUST00000041266 ENSMUSP00000047185 TRANSLATION protein_coding - CCDS19181.1 1 231.0 0.0 2.3 7.1 46.1 1.0 0,-4 1.0 - 13.976 PRINCIPAL:1 ENSMUSG00000038552 Fndc4 ENSMUST00000172435 ENSMUSP00000127404 TRANSLATION protein_coding - CCDS19181.1 1 231.0 0.0 2.3 7.1 46.1 1.0 0,-4 1.0 - 13.976 PRINCIPAL:1 ENSMUSG00000038552 Fndc4 ENSMUST00000201417 ENSMUSP00000144142 TRANSLATION protein_coding stop - 2 119.0 0.0 2.0 0.0 46.3 0.0 0,-4 0.0277 - -2.0 MINOR ENSMUSG00000072813 Pramel55 ENSMUST00000071182 ENSMUSP00000071174 TRANSLATION protein_coding - CCDS51565.1 1 481.0 2.0 2.2 0.4 0.0 0.0 -4,-6 0.9626 - 8.0 PRINCIPAL:1 ENSMUSG00000029546 Uncx ENSMUST00000172997 ENSMUSP00000134067 TRANSLATION protein_coding - CCDS19813.1 1 530.0 0.0 1.0 0.4 79.1 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000029546 Uncx ENSMUST00000174792 ENSMUSP00000139081 TRANSLATION protein_coding - - 1 201.0 0.0 1.0 0.0 47.8 0.0 -4,-5 0.0275 1 9.624 MINOR ENSMUSG00000053268 Dspp ENSMUST00000112771 ENSMUSP00000108391 TRANSLATION protein_coding - CCDS39190.1 1 945.0 0.0 0.0 0.0 0.0 0.0 4,-1 1.0 - 0.0 PRINCIPAL:1 ENSMUSG00000109903 Cdhr17 ENSMUST00000211738 ENSMUSP00000147354 TRANSLATION protein_coding - - 5 962.0 43.0 7.24 0.1 182.6 0.0 2,-3 0.9347 - 18.0 PRINCIPAL:1 ENSMUSG00000006641 Slc5a6 ENSMUST00000201017 - NO_TRANSLATION retained_intron ENSMUSG00000006641 Slc5a6 ENSMUST00000200816 ENSMUSP00000144665 TRANSLATION protein_coding stop - 2 81.0 0.0 0.3 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000006641 Slc5a6 ENSMUST00000080431 ENSMUSP00000079291 TRANSLATION protein_coding - CCDS19169.1 1 634.0 0.0 6.396 5.5 132.5 13.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000006641 Slc5a6 ENSMUST00000202984 ENSMUSP00000144349 TRANSLATION protein_coding start/stop - 3 195.0 0.0 3.306 0.0 47.3 3.0 -1,-4 0.0007 - -2.0 MINOR ENSMUSG00000006641 Slc5a6 ENSMUST00000114668 ENSMUSP00000110316 TRANSLATION protein_coding - CCDS19169.1 1 634.0 0.0 6.396 5.5 132.5 13.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000006641 Slc5a6 ENSMUST00000202556 ENSMUSP00000143993 TRANSLATION protein_coding - CCDS19169.1 5 634.0 0.0 6.396 5.5 132.5 13.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000006641 Slc5a6 ENSMUST00000202520 ENSMUSP00000143938 TRANSLATION protein_coding - CCDS19169.1 1 634.0 0.0 6.396 5.5 132.5 13.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000004849 Ap1s1 ENSMUST00000154183 - NO_TRANSLATION retained_intron ENSMUSG00000004849 Ap1s1 ENSMUST00000111080 ENSMUSP00000106709 TRANSLATION protein_coding - CCDS39330.1 1 158.0 0.0 3.5 36.9 207.3 0.0 -4,0 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000004849 Ap1s1 ENSMUST00000144303 ENSMUSP00000120895 TRANSLATION protein_coding stop - 2 150.0 0.0 3.165 1.1 207.3 0.0 -4,0 0.084 4 -2.0 MINOR ENSMUSG00000004849 Ap1s1 ENSMUST00000150603 ENSMUSP00000115941 TRANSLATION protein_coding stop - 2 189.0 0.0 3.165 0.0 205.2 0.0 -4,-2 0.0122 4 -2.0 MINOR ENSMUSG00000004849 Ap1s1 ENSMUST00000129356 ENSMUSP00000119458 TRANSLATION protein_coding stop - 2 77.0 0.0 1.0 0.0 69.5 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000042594 Sh2b3 ENSMUST00000136960 ENSMUSP00000119086 TRANSLATION nonsense_mediated_decay - - 2 370.0 0.0 2.48 0.0 92.0 0.0 -4,-2 0.0005 - -2.0 MINOR ENSMUSG00000042594 Sh2b3 ENSMUST00000040308 ENSMUSP00000041611 TRANSLATION protein_coding - CCDS19641.1 1 548.0 0.0 5.428 0.3 143.2 0.0 -4,-2 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000042594 Sh2b3 ENSMUST00000118580 ENSMUSP00000113808 TRANSLATION protein_coding - CCDS84952.1 2 538.0 0.0 5.23 0.0 143.2 0.0 -4,-2 0.399 3 7.604 ALTERNATIVE:2 ENSMUSG00000042594 Sh2b3 ENSMUST00000197892 ENSMUSP00000142666 TRANSLATION protein_coding stop - 3 250.0 0.0 1.88 0.0 66.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000042594 Sh2b3 ENSMUST00000198161 ENSMUSP00000143505 TRANSLATION protein_coding start - 3 102.0 3.0 0.0 0.0 0.0 0.0 -2,1 0.0027 - -2.0 MINOR ENSMUSG00000042594 Sh2b3 ENSMUST00000086310 ENSMUSP00000083490 TRANSLATION protein_coding - CCDS19641.1 1 548.0 0.0 5.428 0.3 143.2 0.0 -4,-2 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000042594 Sh2b3 ENSMUST00000122426 ENSMUSP00000113926 TRANSLATION protein_coding - CCDS19641.1 1 548.0 0.0 5.428 0.3 143.2 0.0 -4,-2 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000042594 Sh2b3 ENSMUST00000137682 ENSMUSP00000118523 TRANSLATION protein_coding stop - 3 160.0 0.0 0.0 0.0 66.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000049971 Glt1d1 ENSMUST00000137157 - NO_TRANSLATION retained_intron ENSMUSG00000049971 Glt1d1 ENSMUST00000134529 - NO_TRANSLATION retained_intron ENSMUSG00000049971 Glt1d1 ENSMUST00000118139 ENSMUSP00000113864 TRANSLATION protein_coding - CCDS51651.1 1 346.0 0.0 9.25 10.7 75.2 0.0 -1,2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000035836 Ugt2b1 ENSMUST00000031183 ENSMUSP00000031183 TRANSLATION protein_coding - CCDS19382.1 1 529.0 15.0 6.0 9.9 855.9 0.0 0,-3 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000029502 Golga3 ENSMUST00000031477 ENSMUSP00000031477 TRANSLATION protein_coding - CCDS84928.1 5 1487.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.5719 47 1.0 ALTERNATIVE:2 ENSMUSG00000029502 Golga3 ENSMUST00000125380 - NO_TRANSLATION retained_intron ENSMUSG00000029502 Golga3 ENSMUST00000112512 ENSMUSP00000108131 TRANSLATION protein_coding - CCDS39209.1 1 1447.0 0.0 0.0 1.1 0.0 0.0 -4,-5 1.0 46 1.0 PRINCIPAL:2 ENSMUSG00000029502 Golga3 ENSMUST00000139611 ENSMUSP00000115367 TRANSLATION protein_coding stop - 2 121.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0199 1 -2.0 MINOR ENSMUSG00000029502 Golga3 ENSMUST00000136900 - NO_TRANSLATION retained_intron ENSMUSG00000038564 Ift172 ENSMUST00000201953 - NO_TRANSLATION retained_intron ENSMUSG00000038564 Ift172 ENSMUST00000201809 ENSMUSP00000144425 TRANSLATION protein_coding - - 5 83.0 0.0 0.14 0.0 12.3 0.0 -4,-6 0.0215 3 6.546 MINOR ENSMUSG00000038564 Ift172 ENSMUST00000200936 - NO_TRANSLATION retained_intron ENSMUSG00000038564 Ift172 ENSMUST00000041565 ENSMUSP00000049335 TRANSLATION protein_coding - CCDS39054.1 1 1749.0 0.0 1.533 32.0 12.3 0.0 -4,-6 1.0 29 16.0 PRINCIPAL:1 ENSMUSG00000038564 Ift172 ENSMUST00000202589 ENSMUSP00000143995 TRANSLATION protein_coding start - 3 242.0 0.0 0.965 0.0 0.0 0.0 -4,-5 0.0003 3 -2.0 MINOR ENSMUSG00000038564 Ift172 ENSMUST00000202410 - NO_TRANSLATION retained_intron ENSMUSG00000038564 Ift172 ENSMUST00000202560 - NO_TRANSLATION retained_intron ENSMUSG00000038564 Ift172 ENSMUST00000202585 ENSMUSP00000144216 TRANSLATION protein_coding start/stop - 5 258.0 0.0 0.923 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000038564 Ift172 ENSMUST00000201057 - NO_TRANSLATION retained_intron ENSMUSG00000038564 Ift172 ENSMUST00000201426 - NO_TRANSLATION retained_intron ENSMUSG00000038564 Ift172 ENSMUST00000201274 - NO_TRANSLATION retained_intron ENSMUSG00000036898 Zfp157 ENSMUST00000085856 ENSMUSP00000083018 TRANSLATION protein_coding - CCDS39345.1 1 567.0 44.0 3.1 0.4 319.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036898 Zfp157 ENSMUST00000151095 - NO_TRANSLATION retained_intron ENSMUSG00000036898 Zfp157 ENSMUST00000100524 ENSMUSP00000098093 TRANSLATION protein_coding - - 3 112.0 0.0 1.7 0.4 86.2 0.0 -4,-6 0.0 - 3.198 MINOR ENSMUSG00000036898 Zfp157 ENSMUST00000137711 - NO_TRANSLATION retained_intron ENSMUSG00000036898 Zfp157 ENSMUST00000110912 ENSMUSP00000106537 TRANSLATION protein_coding - - 3 128.0 0.0 1.5 0.0 86.2 0.0 -4,-5 0.0 - 2.802 MINOR ENSMUSG00000036898 Zfp157 ENSMUST00000134706 - NO_TRANSLATION retained_intron ENSMUSG00000029522 Pla2g1b ENSMUST00000125568 ENSMUSP00000120743 TRANSLATION protein_coding stop - 2 124.0 7.0 2.5 0.0 115.9 0.0 4,-2 0.0049 4 -2.0 MINOR ENSMUSG00000029522 Pla2g1b ENSMUST00000112071 ENSMUSP00000107702 TRANSLATION protein_coding - - 1 82.0 2.0 1.1 0.0 52.2 0.0 3,-3 0.0 1 4.62 MINOR ENSMUSG00000029522 Pla2g1b ENSMUST00000031495 ENSMUSP00000031495 TRANSLATION protein_coding - CCDS19592.1 1 146.0 8.0 3.25 15.2 128.5 0.0 3,-3 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000029522 Pla2g1b ENSMUST00000202822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029522 Pla2g1b ENSMUST00000145785 ENSMUSP00000138683 TRANSLATION protein_coding - - 5 77.0 2.0 1.25 0.0 51.6 0.0 3,-3 0.0 1 4.884 MINOR ENSMUSG00000053581 Zfand2a ENSMUST00000143889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053581 Zfand2a ENSMUST00000150992 ENSMUSP00000123097 TRANSLATION protein_coding stop - 5 89.0 11.0 2.5 0.0 49.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053581 Zfand2a ENSMUST00000132454 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053581 Zfand2a ENSMUST00000110851 ENSMUSP00000106475 TRANSLATION protein_coding - CCDS19812.1 1 171.0 20.0 3.5 5.9 90.0 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000053581 Zfand2a ENSMUST00000079996 ENSMUSP00000078910 TRANSLATION protein_coding - CCDS19812.1 1 171.0 20.0 3.5 5.9 90.0 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000029165 Agbl5 ENSMUST00000200695 ENSMUSP00000144109 TRANSLATION protein_coding stop - 3 178.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029165 Agbl5 ENSMUST00000201014 ENSMUSP00000144343 TRANSLATION protein_coding start - 5 137.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029165 Agbl5 ENSMUST00000201918 - NO_TRANSLATION retained_intron ENSMUSG00000029165 Agbl5 ENSMUST00000114700 ENSMUSP00000110348 TRANSLATION protein_coding - CCDS39048.1 1 846.0 6.0 1.6925 0.0 42.7 0.0 -4,-6 0.1816 - 11.4 MINOR ENSMUSG00000029165 Agbl5 ENSMUST00000202565 - NO_TRANSLATION retained_intron ENSMUSG00000029165 Agbl5 ENSMUST00000201901 - NO_TRANSLATION retained_intron ENSMUSG00000029165 Agbl5 ENSMUST00000200850 ENSMUSP00000144274 TRANSLATION protein_coding stop - 5 231.0 0.0 0.6925 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029165 Agbl5 ENSMUST00000201917 ENSMUSP00000144188 TRANSLATION protein_coding - - 1 817.0 6.0 1.88 6.8 42.7 0.0 -4,-6 0.78 - 14.001 ALTERNATIVE:1 ENSMUSG00000029165 Agbl5 ENSMUST00000202757 - NO_TRANSLATION retained_intron ENSMUSG00000029165 Agbl5 ENSMUST00000069705 ENSMUSP00000063228 TRANSLATION protein_coding - CCDS19165.1 1 719.0 6.0 1.88 3.2 42.7 0.0 -4,-6 0.5053 - 12.759 MINOR ENSMUSG00000029165 Agbl5 ENSMUST00000202060 ENSMUSP00000144018 TRANSLATION protein_coding - CCDS80242.1 1 770.0 6.0 1.88 0.0 42.7 0.0 -4,-6 0.2448 - 12.0 MINOR ENSMUSG00000029165 Agbl5 ENSMUST00000201817 ENSMUSP00000144304 TRANSLATION nonsense_mediated_decay - - 1 808.0 6.0 1.88 1.1 42.7 0.0 -4,-6 0.2673 - -2.0 MINOR ENSMUSG00000029165 Agbl5 ENSMUST00000201523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029165 Agbl5 ENSMUST00000201225 ENSMUSP00000143934 TRANSLATION protein_coding - CCDS80242.1 1 770.0 6.0 1.88 0.0 42.7 0.0 -4,-6 0.2448 - 12.0 MINOR ENSMUSG00000029165 Agbl5 ENSMUST00000200990 - NO_TRANSLATION retained_intron ENSMUSG00000029165 Agbl5 ENSMUST00000201167 - NO_TRANSLATION retained_intron ENSMUSG00000029165 Agbl5 ENSMUST00000201168 ENSMUSP00000143808 TRANSLATION protein_coding - - 5 886.0 6.0 1.88 9.7 42.7 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:4 ENSMUSG00000029165 Agbl5 ENSMUST00000202109 ENSMUSP00000144441 TRANSLATION protein_coding start/stop - 5 256.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000016510 Mtif3 ENSMUST00000066675 ENSMUSP00000063398 TRANSLATION protein_coding - CCDS19874.1 1 276.0 0.0 3.6 7.2 43.8 0.0 -4,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000016510 Mtif3 ENSMUST00000016654 ENSMUSP00000016654 TRANSLATION protein_coding - CCDS19874.1 1 276.0 0.0 3.6 7.2 43.8 0.0 -4,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000016510 Mtif3 ENSMUST00000110566 ENSMUSP00000106195 TRANSLATION protein_coding - CCDS19874.1 1 276.0 0.0 3.6 7.2 43.8 0.0 -4,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000016510 Mtif3 ENSMUST00000140526 ENSMUSP00000120064 TRANSLATION protein_coding stop - 3 109.0 0.0 0.6 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000016510 Mtif3 ENSMUST00000125217 ENSMUSP00000120283 TRANSLATION protein_coding stop - 3 113.0 0.0 0.6 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000016510 Mtif3 ENSMUST00000110564 ENSMUSP00000106193 TRANSLATION protein_coding - CCDS19874.1 1 276.0 0.0 3.6 7.2 43.8 0.0 -4,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000029561 Oasl2 ENSMUST00000031542 ENSMUSP00000031542 TRANSLATION protein_coding - CCDS39226.1 1 508.0 8.0 10.0 1.1 318.0 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000029561 Oasl2 ENSMUST00000201919 - NO_TRANSLATION retained_intron ENSMUSG00000029561 Oasl2 ENSMUST00000150361 ENSMUSP00000119042 TRANSLATION protein_coding stop - 3 142.0 4.0 3.75 0.0 21.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029561 Oasl2 ENSMUST00000144064 ENSMUSP00000117876 TRANSLATION nonsense_mediated_decay start - 1 57.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029561 Oasl2 ENSMUST00000124716 ENSMUSP00000115070 TRANSLATION protein_coding stop - 3 240.0 2.0 3.0 0.0 164.4 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000029561 Oasl2 ENSMUST00000146072 ENSMUSP00000117795 TRANSLATION protein_coding stop - 3 101.0 4.0 2.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029561 Oasl2 ENSMUST00000129707 - NO_TRANSLATION retained_intron ENSMUSG00000029561 Oasl2 ENSMUST00000201445 - NO_TRANSLATION retained_intron ENSMUSG00000029561 Oasl2 ENSMUST00000137828 - NO_TRANSLATION retained_intron ENSMUSG00000029616 Erp29 ENSMUST00000111802 ENSMUSP00000107433 TRANSLATION nonsense_mediated_decay - - 2 57.0 0.0 0.6 0.0 0.0 0.0 4,-1 0.0008 1 -2.0 MINOR ENSMUSG00000029616 Erp29 ENSMUST00000130451 ENSMUSP00000117347 TRANSLATION protein_coding - CCDS19634.1 1 262.0 0.0 2.6 4.3 272.0 0.0 4,-1 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000029616 Erp29 ENSMUST00000052590 ENSMUSP00000059275 TRANSLATION protein_coding - - 1 55.0 0.0 0.6 0.0 0.0 0.0 4,-1 0.0079 1 1.386 MINOR ENSMUSG00000029616 Erp29 ENSMUST00000153758 ENSMUSP00000122522 TRANSLATION nonsense_mediated_decay - - 1 95.0 0.0 0.6 0.0 0.0 0.0 4,-1 0.0018 1 -2.0 MINOR ENSMUSG00000047843 Bri3 ENSMUST00000110695 ENSMUSP00000106323 TRANSLATION protein_coding - CCDS51694.1 2 121.0 4.0 1.0 0.4 114.5 0.0 -3,-6 0.2099 1 15.688 MINOR ENSMUSG00000047843 Bri3 ENSMUST00000155491 ENSMUSP00000122016 TRANSLATION nonsense_mediated_decay - - 1 100.0 2.0 0.0 0.0 30.5 0.0 -4,-5 0.0004 1 -2.0 MINOR ENSMUSG00000047843 Bri3 ENSMUST00000056578 ENSMUSP00000057263 TRANSLATION protein_coding - CCDS19848.1 1 125.0 3.0 1.0 8.4 119.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000029449 Rhof ENSMUST00000186469 ENSMUSP00000140177 TRANSLATION protein_coding - CCDS39263.1 1 211.0 18.0 5.0 5.8 167.2 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000029449 Rhof ENSMUST00000031401 ENSMUSP00000031401 TRANSLATION protein_coding - CCDS39263.1 1 211.0 18.0 5.0 5.8 167.2 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000029449 Rhof ENSMUST00000162208 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029449 Rhof ENSMUST00000160479 ENSMUSP00000124866 TRANSLATION nonsense_mediated_decay - CCDS39263.1 1 211.0 18.0 5.0 5.8 167.2 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000014668 Chfr ENSMUST00000197968 - NO_TRANSLATION retained_intron ENSMUSG00000014668 Chfr ENSMUST00000014812 ENSMUSP00000014812 TRANSLATION protein_coding - CCDS19522.1 1 663.0 19.0 9.76 8.1 95.1 0.0 -4,-5 0.9904 5 16.631 ALTERNATIVE:1 ENSMUSG00000014668 Chfr ENSMUST00000198066 ENSMUSP00000142482 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014668 Chfr ENSMUST00000199557 ENSMUSP00000143113 TRANSLATION nonsense_mediated_decay - - 1 50.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014668 Chfr ENSMUST00000198633 ENSMUSP00000143480 TRANSLATION protein_coding - CCDS80358.1 1 592.0 19.0 9.76 1.9 95.1 0.0 -4,-5 0.3285 5 14.333 MINOR ENSMUSG00000014668 Chfr ENSMUST00000112519 ENSMUSP00000108138 TRANSLATION protein_coding - CCDS71637.1 1 664.0 19.0 9.76 9.1 95.1 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:4 ENSMUSG00000014668 Chfr ENSMUST00000197010 - NO_TRANSLATION retained_intron ENSMUSG00000014668 Chfr ENSMUST00000199811 ENSMUSP00000143737 TRANSLATION protein_coding stop - 5 114.0 0.0 3.41 0.0 60.2 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000014668 Chfr ENSMUST00000199283 ENSMUSP00000143389 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014668 Chfr ENSMUST00000199672 ENSMUSP00000143310 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014668 Chfr ENSMUST00000197005 - NO_TRANSLATION retained_intron ENSMUSG00000014668 Chfr ENSMUST00000200038 ENSMUSP00000142354 TRANSLATION protein_coding - - 1 51.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000073234 Fam237b ENSMUST00000101627 ENSMUSP00000147824 TRANSLATION protein_coding - - 1 132.0 0.0 1.0 0.1 0.0 0.0 4,-1 0.7494 - 6.0 PRINCIPAL:1 ENSMUSG00000029501 Ankle2 ENSMUST00000031474 ENSMUSP00000031474 TRANSLATION protein_coding - CCDS80360.1 1 963.0 0.0 0.64 0.0 34.6 1.0 1,-3 0.995 27 8.0 ALTERNATIVE:2 ENSMUSG00000029501 Ankle2 ENSMUST00000197188 ENSMUSP00000143044 TRANSLATION protein_coding - CCDS57372.1 1 964.0 0.0 0.64 0.0 34.6 1.0 1,-3 1.0 28 8.0 PRINCIPAL:3 ENSMUSG00000029501 Ankle2 ENSMUST00000197101 - NO_TRANSLATION retained_intron ENSMUSG00000029501 Ankle2 ENSMUST00000196821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029501 Ankle2 ENSMUST00000196865 - NO_TRANSLATION retained_intron ENSMUSG00000029621 Arpc1a ENSMUST00000147564 - NO_TRANSLATION retained_intron ENSMUSG00000029621 Arpc1a ENSMUST00000142276 - NO_TRANSLATION retained_intron ENSMUSG00000029621 Arpc1a ENSMUST00000124379 ENSMUSP00000114421 TRANSLATION protein_coding stop - 5 135.0 0.0 2.75 0.0 24.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000029621 Arpc1a ENSMUST00000031625 ENSMUSP00000031625 TRANSLATION protein_coding - CCDS19855.1 1 370.0 0.0 7.8 34.9 41.7 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000029621 Arpc1a ENSMUST00000134835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029621 Arpc1a ENSMUST00000127694 ENSMUSP00000143026 TRANSLATION nonsense_mediated_decay - - 5 262.0 0.0 4.9 0.0 41.7 0.0 -4,-5 0.005 7 -2.0 MINOR ENSMUSG00000047635 Mtrfr ENSMUST00000077376 ENSMUSP00000076594 TRANSLATION protein_coding - CCDS51647.1 1 184.0 0.0 2.0 0.0 74.5 0.0 -2,0 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000047635 Mtrfr ENSMUST00000111477 ENSMUSP00000107102 TRANSLATION protein_coding - CCDS51648.1 1 128.0 0.0 1.0 0.0 37.9 0.0 -2,0 0.0284 1 6.054 MINOR ENSMUSG00000079666 Pttg1ip2 ENSMUST00000156282 ENSMUSP00000122651 TRANSLATION nonsense_mediated_decay - - 1 62.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0403 - -2.0 MINOR ENSMUSG00000079666 Pttg1ip2 ENSMUST00000115447 ENSMUSP00000111107 TRANSLATION protein_coding - CCDS51410.1 1 150.0 0.0 0.0 0.4 0.0 0.0 -1,-5 0.888 - 0.0 PRINCIPAL:1 ENSMUSG00000079666 Pttg1ip2 ENSMUST00000128151 ENSMUSP00000121859 TRANSLATION protein_coding start - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 - -2.0 MINOR ENSMUSG00000094205 Gm8926 ENSMUST00000178158 ENSMUSP00000136071 TRANSLATION protein_coding start - 5 154.0 0.0 1.306 0.0 80.7 0.0 -4,-5 0.0537 - -2.0 ALTERNATIVE:2 ENSMUSG00000094205 Gm8926 ENSMUST00000167566 ENSMUSP00000132103 TRANSLATION protein_coding start - 1 181.0 0.0 1.306 0.0 80.7 0.0 -4,-7 0.772 - -2.0 PRINCIPAL:5 ENSMUSG00000053178 Mterf1b ENSMUST00000177258 ENSMUSP00000135408 TRANSLATION protein_coding - CCDS39004.2 1 381.0 0.0 1.0 5.1 263.1 0.0 -4,0 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000039682 Lap3 ENSMUST00000135413 - NO_TRANSLATION retained_intron ENSMUSG00000039682 Lap3 ENSMUST00000046122 ENSMUSP00000040222 TRANSLATION protein_coding - CCDS19274.1 1 519.0 10.0 11.1 15.1 487.0 0.0 -4,0 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000039682 Lap3 ENSMUST00000146811 - NO_TRANSLATION retained_intron ENSMUSG00000039682 Lap3 ENSMUST00000131289 - NO_TRANSLATION retained_intron ENSMUSG00000039682 Lap3 ENSMUST00000198534 ENSMUSP00000142831 TRANSLATION protein_coding start/stop - 5 107.0 0.0 2.1 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000039682 Lap3 ENSMUST00000137699 - NO_TRANSLATION retained_intron ENSMUSG00000061184 Tmprss11c ENSMUST00000059424 ENSMUSP00000062915 TRANSLATION protein_coding - CCDS19380.1 1 431.0 5.0 3.8 3.7 313.7 1.0 -4,-7 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000061184 Tmprss11c ENSMUST00000196462 ENSMUSP00000142902 TRANSLATION protein_coding - - 5 418.0 5.0 3.8 0.0 313.7 1.0 -4,-7 0.068 - 13.0 ALTERNATIVE:2 ENSMUSG00000091827 Speer4f2 ENSMUST00000166086 ENSMUSP00000129818 TRANSLATION protein_coding - - 5 295.0 0.0 3.0 0.0 63.6 0.0 -4,-2 0.773 - 12.0 PRINCIPAL:1 ENSMUSG00000036693 Nop14 ENSMUST00000041364 ENSMUSP00000038382 TRANSLATION protein_coding - CCDS19218.1 1 860.0 0.0 0.0 0.0 908.7 0.0 -4,-7 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000036693 Nop14 ENSMUST00000201897 ENSMUSP00000143989 TRANSLATION protein_coding start - 3 129.0 0.0 0.0 0.0 145.8 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000036693 Nop14 ENSMUST00000152393 - NO_TRANSLATION retained_intron ENSMUSG00000029486 Mrpl1 ENSMUST00000121477 ENSMUSP00000112451 TRANSLATION protein_coding - CCDS51567.1 1 276.0 0.0 4.75 0.0 0.0 0.0 -4,0 0.0104 8 3.0 MINOR ENSMUSG00000029486 Mrpl1 ENSMUST00000117766 ENSMUSP00000112977 TRANSLATION protein_coding - CCDS19449.1 5 336.0 0.0 6.25 0.0 62.4 0.0 -4,0 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000029377 Ereg ENSMUST00000031324 ENSMUSP00000031324 TRANSLATION protein_coding - CCDS19420.1 1 162.0 0.0 2.35 3.2 0.0 0.0 2,-2 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000062329 Cytl1 ENSMUST00000201048 - NO_TRANSLATION retained_intron ENSMUSG00000062329 Cytl1 ENSMUST00000073554 ENSMUSP00000073244 TRANSLATION protein_coding - CCDS39077.1 1 139.0 0.0 3.05 0.0 205.2 0.0 4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000038295 Atg9b ENSMUST00000138716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038295 Atg9b ENSMUST00000059401 ENSMUSP00000051864 TRANSLATION protein_coding - CCDS39027.1 1 922.0 0.0 4.94 1.2 328.8 0.0 -2,0 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000038295 Atg9b ENSMUST00000128831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004455 Ppp1cc ENSMUST00000151184 ENSMUSP00000142623 TRANSLATION nonsense_mediated_decay start - 5 27.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004455 Ppp1cc ENSMUST00000133568 ENSMUSP00000143006 TRANSLATION nonsense_mediated_decay start - 5 87.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000004455 Ppp1cc ENSMUST00000102528 ENSMUSP00000099587 TRANSLATION protein_coding - CCDS19643.1 1 323.0 10.0 7.288 27.9 222.5 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000004455 Ppp1cc ENSMUST00000135090 - NO_TRANSLATION retained_intron ENSMUSG00000004455 Ppp1cc ENSMUST00000128309 ENSMUSP00000142415 TRANSLATION nonsense_mediated_decay - - 1 273.0 10.0 5.49 0.0 222.5 0.0 -4,-5 0.0042 2 -2.0 MINOR ENSMUSG00000004455 Ppp1cc ENSMUST00000086294 ENSMUSP00000083474 TRANSLATION protein_coding - - 1 337.0 10.0 7.24 8.4 222.5 0.0 -4,-5 0.3639 3 19.004 MINOR ENSMUSG00000004455 Ppp1cc ENSMUST00000142562 - NO_TRANSLATION retained_intron ENSMUSG00000004455 Ppp1cc ENSMUST00000134719 ENSMUSP00000142700 TRANSLATION nonsense_mediated_decay start - 3 26.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004455 Ppp1cc ENSMUST00000197730 ENSMUSP00000143146 TRANSLATION protein_coding start - 5 292.0 9.0 5.91 0.0 168.9 0.0 -4,-6 0.0008 2 -2.0 MINOR ENSMUSG00000004455 Ppp1cc ENSMUST00000132555 ENSMUSP00000143509 TRANSLATION nonsense_mediated_decay - - 1 273.0 10.0 5.49 0.0 222.5 0.0 -4,-5 0.0042 - -2.0 MINOR ENSMUSG00000029442 Cfap251 ENSMUST00000121964 ENSMUSP00000113309 TRANSLATION protein_coding - - 5 1299.0 0.0 3.6155 0.0 36.7 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000029442 Cfap251 ENSMUST00000200666 - NO_TRANSLATION retained_intron ENSMUSG00000029442 Cfap251 ENSMUST00000170536 ENSMUSP00000129769 TRANSLATION protein_coding - - 5 549.0 0.0 2.1095 0.0 12.3 0.0 -4,-7 0.0062 4 4.998 MINOR ENSMUSG00000029442 Cfap251 ENSMUST00000150155 ENSMUSP00000118944 TRANSLATION nonsense_mediated_decay start - 1 27.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029442 Cfap251 ENSMUST00000143629 - NO_TRANSLATION retained_intron ENSMUSG00000029442 Cfap251 ENSMUST00000125979 - NO_TRANSLATION retained_intron ENSMUSG00000029442 Cfap251 ENSMUST00000069311 ENSMUSP00000069782 TRANSLATION protein_coding - - 5 325.0 0.0 0.666 0.0 0.0 0.0 -4,-6 0.0 4 0.102 MINOR ENSMUSG00000029442 Cfap251 ENSMUST00000197763 - NO_TRANSLATION retained_intron ENSMUSG00000013622 Atraid ENSMUST00000201174 ENSMUSP00000143956 TRANSLATION protein_coding stop - 3 65.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0144 1 -2.0 MINOR ENSMUSG00000013622 Atraid ENSMUST00000200800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013622 Atraid ENSMUST00000200748 ENSMUSP00000144256 TRANSLATION protein_coding start/stop - 5 183.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0178 2 -2.0 MINOR ENSMUSG00000013622 Atraid ENSMUST00000201773 ENSMUSP00000144333 TRANSLATION protein_coding stop - 3 143.0 0.0 0.0 0.0 0.0 0.0 3,-3 0.0794 1 -2.0 MINOR ENSMUSG00000013622 Atraid ENSMUST00000013766 ENSMUSP00000013766 TRANSLATION protein_coding - CCDS19170.1 1 223.0 0.0 0.0 1.6 0.0 1.0 3,-2 0.3658 2 0.3 MINOR ENSMUSG00000013622 Atraid ENSMUST00000200942 ENSMUSP00000144431 TRANSLATION nonsense_mediated_decay - - 1 36.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0583 - -2.0 MINOR ENSMUSG00000013622 Atraid ENSMUST00000201136 ENSMUSP00000144085 TRANSLATION protein_coding - - 3 170.0 0.0 0.0 5.0 0.0 1.0 -4,-6 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000013622 Atraid ENSMUST00000201887 - NO_TRANSLATION retained_intron ENSMUSG00000072188 Gm10354 ENSMUST00000096953 ENSMUSP00000094716 TRANSLATION protein_coding - CCDS59668.1 5 256.0 0.0 2.25 0.0 95.0 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029427 Zcchc8 ENSMUST00000198826 ENSMUSP00000143781 TRANSLATION nonsense_mediated_decay start - 5 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029427 Zcchc8 ENSMUST00000200161 ENSMUSP00000143723 TRANSLATION protein_coding start - 5 103.0 3.0 0.0 0.0 25.2 0.0 -4,-6 0.0006 1 -2.0 MINOR ENSMUSG00000029427 Zcchc8 ENSMUST00000196333 ENSMUSP00000143139 TRANSLATION nonsense_mediated_decay start - 5 173.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029427 Zcchc8 ENSMUST00000200503 ENSMUSP00000142383 TRANSLATION protein_coding start/stop - 3 107.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029427 Zcchc8 ENSMUST00000196042 - NO_TRANSLATION retained_intron ENSMUSG00000029427 Zcchc8 ENSMUST00000196001 ENSMUSP00000142531 TRANSLATION nonsense_mediated_decay start - 5 54.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029427 Zcchc8 ENSMUST00000196282 ENSMUSP00000142363 TRANSLATION protein_coding - CCDS80406.1 5 709.0 4.0 1.4 1.0 86.7 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000029427 Zcchc8 ENSMUST00000199875 - NO_TRANSLATION retained_intron ENSMUSG00000029335 Bmp3 ENSMUST00000200388 ENSMUSP00000142907 TRANSLATION protein_coding - CCDS80345.1 1 470.0 0.0 0.24 0.0 72.0 0.0 3,-1 0.1377 5 3.186 MINOR ENSMUSG00000029335 Bmp3 ENSMUST00000031278 ENSMUSP00000031278 TRANSLATION protein_coding - CCDS19458.1 1 468.0 0.0 1.75 6.5 132.6 0.0 3,-1 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000029335 Bmp3 ENSMUST00000197143 ENSMUSP00000142662 TRANSLATION protein_coding - - 2 443.0 0.0 0.24 0.0 72.0 0.0 3,-1 0.0087 5 3.186 MINOR ENSMUSG00000029359 Tesc ENSMUST00000151792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029359 Tesc ENSMUST00000145526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029359 Tesc ENSMUST00000135540 - NO_TRANSLATION retained_intron ENSMUSG00000029359 Tesc ENSMUST00000031304 ENSMUSP00000031304 TRANSLATION protein_coding - CCDS19608.1 1 214.0 5.0 6.18 27.5 0.0 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000029359 Tesc ENSMUST00000124648 ENSMUSP00000138436 TRANSLATION nonsense_mediated_decay - - 1 163.0 5.0 4.0 0.0 0.0 0.0 -4,-5 0.0033 4 -2.0 MINOR ENSMUSG00000029359 Tesc ENSMUST00000148777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067149 Jchain ENSMUST00000087033 ENSMUSP00000084259 TRANSLATION protein_coding - CCDS19401.1 1 159.0 0.0 2.55 14.4 243.7 0.0 2,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000067149 Jchain ENSMUST00000164073 - NO_TRANSLATION retained_intron ENSMUSG00000040429 Mterf1a ENSMUST00000117463 ENSMUSP00000113306 TRANSLATION protein_coding - CCDS39003.1 1 379.0 0.0 1.0 5.1 263.7 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040429 Mterf1a ENSMUST00000044746 ENSMUSP00000046017 TRANSLATION protein_coding - CCDS39003.1 1 379.0 0.0 1.0 5.1 263.7 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040429 Mterf1a ENSMUST00000196417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034384 Barhl2 ENSMUST00000086795 ENSMUSP00000084005 TRANSLATION protein_coding - CCDS19497.1 1 384.0 0.0 1.6 6.8 75.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048271 Rbm33 ENSMUST00000090355 ENSMUSP00000091512 TRANSLATION non_stop_decay stop - 5 261.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000048271 Rbm33 ENSMUST00000133313 ENSMUSP00000122901 TRANSLATION protein_coding start - 5 65.0 0.0 0.0 0.0 20.9 0.0 -4,-5 0.0423 1 -2.0 MINOR ENSMUSG00000048271 Rbm33 ENSMUST00000114884 ENSMUSP00000110534 TRANSLATION protein_coding - - 5 1191.0 0.0 0.0 0.0 20.9 0.0 -4,-5 0.8723 10 2.0 PRINCIPAL:4 ENSMUSG00000048271 Rbm33 ENSMUST00000144967 ENSMUSP00000121879 TRANSLATION protein_coding start - 3 383.0 0.0 0.0 0.0 20.9 0.0 -4,-6 0.0632 5 -2.0 MINOR ENSMUSG00000048271 Rbm33 ENSMUST00000059644 ENSMUSP00000062449 TRANSLATION protein_coding - CCDS51448.1 5 1231.0 0.0 0.0 0.0 20.9 0.0 -4,-5 0.649 10 2.0 ALTERNATIVE:2 ENSMUSG00000048271 Rbm33 ENSMUST00000030920 ENSMUSP00000030920 TRANSLATION protein_coding - - 1 320.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0062 - 0.0 MINOR ENSMUSG00000036928 Stag3 ENSMUST00000159483 - NO_TRANSLATION retained_intron ENSMUSG00000036928 Stag3 ENSMUST00000048028 ENSMUSP00000040945 TRANSLATION protein_coding - CCDS39344.1 1 1240.0 0.0 21.91 0.0 119.7 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036928 Stag3 ENSMUST00000160849 ENSMUSP00000125376 TRANSLATION protein_coding start/stop - 3 152.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036928 Stag3 ENSMUST00000159189 ENSMUSP00000124959 TRANSLATION nonsense_mediated_decay start - 2 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036928 Stag3 ENSMUST00000161691 ENSMUSP00000125290 TRANSLATION protein_coding stop - 3 200.0 0.0 1.95 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036928 Stag3 ENSMUST00000161113 - NO_TRANSLATION retained_intron ENSMUSG00000036928 Stag3 ENSMUST00000160729 ENSMUSP00000124170 TRANSLATION protein_coding stop - 2 199.0 0.0 2.45 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000036928 Stag3 ENSMUST00000161615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036928 Stag3 ENSMUST00000162245 ENSMUSP00000125523 TRANSLATION protein_coding - CCDS39344.1 5 1240.0 0.0 21.91 0.0 119.7 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036596 Cpz ENSMUST00000038676 ENSMUSP00000039804 TRANSLATION protein_coding - CCDS19229.1 1 654.0 8.0 6.68 0.0 367.3 0.0 3,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000036596 Cpz ENSMUST00000132959 ENSMUSP00000123537 TRANSLATION protein_coding stop - 5 102.0 0.0 0.2 0.0 33.9 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000028970 Abcb1b ENSMUST00000009058 ENSMUSP00000009058 TRANSLATION protein_coding - CCDS19085.1 1 1276.0 8.0 24.08 3.4 814.0 10.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000028970 Abcb1b ENSMUST00000198650 ENSMUSP00000143023 TRANSLATION protein_coding start/stop - 5 205.0 8.0 3.33 0.0 73.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000028970 Abcb1b ENSMUST00000197961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028970 Abcb1b ENSMUST00000199546 - NO_TRANSLATION retained_intron ENSMUSG00000028970 Abcb1b ENSMUST00000199955 ENSMUSP00000143766 TRANSLATION nonsense_mediated_decay - - 1 106.0 0.0 1.75 0.0 0.0 2.0 -4,-6 0.0006 - -2.0 MINOR ENSMUSG00000028970 Abcb1b ENSMUST00000196819 - NO_TRANSLATION retained_intron ENSMUSG00000028970 Abcb1b ENSMUST00000196580 ENSMUSP00000143612 TRANSLATION nonsense_mediated_decay - - 3 106.0 0.0 1.75 0.0 0.0 2.0 -4,-6 0.0006 - -2.0 MINOR ENSMUSG00000028970 Abcb1b ENSMUST00000199994 - NO_TRANSLATION retained_intron ENSMUSG00000028970 Abcb1b ENSMUST00000196048 - NO_TRANSLATION retained_intron ENSMUSG00000008348 Ubc ENSMUST00000156249 ENSMUSP00000115578 TRANSLATION protein_coding - CCDS19684.2 2 734.0 0.0 2.0 0.0 1027.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000008348 Ubc ENSMUST00000108707 ENSMUSP00000104347 TRANSLATION protein_coding stop - 2 201.0 0.0 1.0 0.0 304.7 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000008348 Ubc ENSMUST00000136312 ENSMUSP00000114180 TRANSLATION protein_coding - CCDS19684.2 1 734.0 0.0 2.0 0.0 1027.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000053368 Rxfp2 ENSMUST00000065745 ENSMUSP00000067897 TRANSLATION protein_coding - CCDS19886.1 1 737.0 0.0 9.609 7.1 221.9 9.0 2,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000053368 Rxfp2 ENSMUST00000143989 - NO_TRANSLATION retained_intron ENSMUSG00000053368 Rxfp2 ENSMUST00000110496 ENSMUSP00000106122 TRANSLATION protein_coding - CCDS80480.1 1 713.0 0.0 9.009 0.0 218.3 9.0 2,-3 0.1642 - 10.584 MINOR ENSMUSG00000053368 Rxfp2 ENSMUST00000201612 ENSMUSP00000144536 TRANSLATION protein_coding - CCDS80479.1 1 727.0 0.0 9.209 0.0 221.0 9.0 2,-3 0.2711 - 11.148 MINOR ENSMUSG00000053368 Rxfp2 ENSMUST00000131212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053368 Rxfp2 ENSMUST00000138901 - NO_TRANSLATION retained_intron ENSMUSG00000096527 Gm6370 ENSMUST00000198912 ENSMUSP00000143740 TRANSLATION protein_coding - - 3 315.0 0.0 2.5 0.0 28.7 0.0 -4,0 0.7558 - 6.0 PRINCIPAL:4 ENSMUSG00000096527 Gm6370 ENSMUST00000110611 ENSMUSP00000106241 TRANSLATION protein_coding - CCDS85003.1 5 311.0 0.0 2.5 0.0 28.7 0.0 -4,0 0.5689 - 6.0 ALTERNATIVE:2 ENSMUSG00000001687 Ubl3 ENSMUST00000202938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001687 Ubl3 ENSMUST00000201688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001687 Ubl3 ENSMUST00000164904 ENSMUSP00000131049 TRANSLATION protein_coding - CCDS39403.1 1 117.0 0.0 3.33 35.9 110.8 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000001687 Ubl3 ENSMUST00000201597 - NO_TRANSLATION retained_intron ENSMUSG00000001687 Ubl3 ENSMUST00000079324 ENSMUSP00000078303 TRANSLATION protein_coding - CCDS39403.1 1 117.0 0.0 3.33 35.9 110.8 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000001687 Ubl3 ENSMUST00000201139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001687 Ubl3 ENSMUST00000201595 ENSMUSP00000144073 TRANSLATION protein_coding - CCDS39403.1 2 117.0 0.0 3.33 35.9 110.8 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000070576 Mn1 ENSMUST00000138784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070576 Mn1 ENSMUST00000094463 ENSMUSP00000092034 TRANSLATION protein_coding - CCDS39214.1 2 1297.0 0.0 0.0 0.4 0.0 0.0 -4,-5 1.0 3 0.0 PRINCIPAL:1 ENSMUSG00000029203 Ube2k ENSMUST00000200946 ENSMUSP00000144308 TRANSLATION protein_coding stop - 5 73.0 0.0 2.0 0.0 32.2 0.0 3,-2 0.0009 3 -2.0 MINOR ENSMUSG00000029203 Ube2k ENSMUST00000201383 ENSMUSP00000144580 TRANSLATION protein_coding - - 5 157.0 0.0 4.75 2.0 141.4 0.0 -4,-5 0.0221 6 6.722 MINOR ENSMUSG00000029203 Ube2k ENSMUST00000201266 ENSMUSP00000144192 TRANSLATION protein_coding - - 5 139.0 0.0 4.0 0.0 100.6 0.0 -4,-5 0.0 8 2.658 MINOR ENSMUSG00000029203 Ube2k ENSMUST00000142407 ENSMUSP00000122471 TRANSLATION protein_coding - CCDS39098.1 1 200.0 0.0 5.75 34.9 198.0 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000029203 Ube2k ENSMUST00000202679 ENSMUSP00000144366 TRANSLATION protein_coding - - 5 97.0 0.0 2.75 23.0 75.3 0.0 3,-2 0.4071 4 2.596 MINOR ENSMUSG00000029203 Ube2k ENSMUST00000202601 ENSMUSP00000144619 TRANSLATION nonsense_mediated_decay - - 2 57.0 0.0 1.75 0.0 26.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029203 Ube2k ENSMUST00000201292 ENSMUSP00000144060 TRANSLATION protein_coding - - 1 97.0 0.0 2.75 23.0 75.3 0.0 3,-2 0.4071 4 2.596 MINOR ENSMUSG00000029203 Ube2k ENSMUST00000202082 ENSMUSP00000144428 TRANSLATION protein_coding - - 1 97.0 0.0 2.75 23.0 75.3 0.0 3,-2 0.4071 4 2.596 MINOR ENSMUSG00000029203 Ube2k ENSMUST00000202721 - NO_TRANSLATION retained_intron ENSMUSG00000029203 Ube2k ENSMUST00000202572 - NO_TRANSLATION retained_intron ENSMUSG00000029203 Ube2k ENSMUST00000201984 ENSMUSP00000143941 TRANSLATION protein_coding - CCDS80289.1 3 149.0 0.0 4.25 7.7 128.1 0.0 -4,-6 0.1255 5 5.598 MINOR ENSMUSG00000033794 Lpcat2b ENSMUST00000166599 ENSMUSP00000127318 TRANSLATION protein_coding - CCDS19502.1 3 516.0 10.0 1.0 0.4 68.6 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000037979 Ccdc92 ENSMUST00000143268 ENSMUSP00000114983 TRANSLATION protein_coding stop - 3 131.0 0.0 2.5 0.0 79.9 0.0 -4,-6 0.0118 3 -2.0 MINOR ENSMUSG00000037979 Ccdc92 ENSMUST00000135495 ENSMUSP00000119438 TRANSLATION nonsense_mediated_decay - - 5 64.0 0.0 1.5 0.0 78.6 0.0 -4,-6 0.0139 1 -2.0 MINOR ENSMUSG00000037979 Ccdc92 ENSMUST00000036206 ENSMUSP00000038075 TRANSLATION protein_coding - CCDS19681.1 1 314.0 0.0 2.5 18.2 79.9 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000051502 Ufsp1 ENSMUST00000238804 ENSMUSP00000159195 TRANSLATION protein_coding - - - 133.0 0.0 1.0 0.0 60.8 0.0 -4,-6 0.0318 3 5.574 MINOR ENSMUSG00000051502 Ufsp1 ENSMUST00000052825 ENSMUSP00000056156 TRANSLATION protein_coding - CCDS19764.1 - 217.0 0.0 2.0 0.0 117.9 0.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000015879 Fam184b ENSMUST00000016023 ENSMUSP00000016023 TRANSLATION protein_coding - CCDS19276.1 1 942.0 0.0 0.0 0.1 86.4 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000015879 Fam184b ENSMUST00000198680 - NO_TRANSLATION retained_intron ENSMUSG00000003974 Grm3 ENSMUST00000004076 ENSMUSP00000004076 TRANSLATION protein_coding - CCDS19090.1 1 879.0 20.0 2.92 18.1 613.2 0.0 1,-3 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000029098 Acox3 ENSMUST00000127641 - NO_TRANSLATION retained_intron ENSMUSG00000029098 Acox3 ENSMUST00000068947 ENSMUSP00000063412 TRANSLATION protein_coding - CCDS19232.1 1 700.0 30.0 17.8 3.6 252.1 0.0 -4,-5 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000029098 Acox3 ENSMUST00000114238 ENSMUSP00000109876 TRANSLATION protein_coding - - 1 685.0 30.0 16.8 0.0 229.9 0.0 -4,-5 0.0321 23 14.67 MINOR ENSMUSG00000029098 Acox3 ENSMUST00000068563 ENSMUSP00000067178 TRANSLATION protein_coding - - 1 697.0 30.0 16.8 0.0 229.9 0.0 -4,-5 0.0636 23 14.67 MINOR ENSMUSG00000029098 Acox3 ENSMUST00000201659 - NO_TRANSLATION retained_intron ENSMUSG00000029098 Acox3 ENSMUST00000202266 ENSMUSP00000144499 TRANSLATION protein_coding - - 5 673.0 30.0 16.8 0.0 229.9 0.0 -4,-5 0.027 23 14.67 MINOR ENSMUSG00000029098 Acox3 ENSMUST00000114237 ENSMUSP00000109875 TRANSLATION protein_coding - CCDS19232.1 1 700.0 30.0 17.8 3.6 252.1 0.0 -4,-5 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000029098 Acox3 ENSMUST00000201106 ENSMUSP00000144658 TRANSLATION protein_coding start/stop - 5 143.0 7.0 3.75 0.0 44.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029098 Acox3 ENSMUST00000154796 - NO_TRANSLATION retained_intron ENSMUSG00000029098 Acox3 ENSMUST00000156125 ENSMUSP00000119216 TRANSLATION protein_coding stop - 2 83.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000047501 Cldn4 ENSMUST00000051401 ENSMUSP00000053420 TRANSLATION protein_coding - CCDS19728.1 - 210.0 0.0 1.0 34.8 119.1 0.0 0,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000029703 Lrwd1 ENSMUST00000139908 - NO_TRANSLATION retained_intron ENSMUSG00000029703 Lrwd1 ENSMUST00000150406 ENSMUSP00000121513 TRANSLATION protein_coding stop - 3 216.0 0.0 1.188 0.0 31.1 0.0 -4,-7 0.0009 - -2.0 MINOR ENSMUSG00000029703 Lrwd1 ENSMUST00000199786 - NO_TRANSLATION retained_intron ENSMUSG00000029703 Lrwd1 ENSMUST00000006301 ENSMUSP00000006301 TRANSLATION protein_coding - CCDS51666.1 1 648.0 0.0 1.963 8.7 48.6 0.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000029703 Lrwd1 ENSMUST00000128255 ENSMUSP00000119546 TRANSLATION protein_coding start/stop - 1 73.0 0.0 0.132 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029703 Lrwd1 ENSMUST00000132976 - NO_TRANSLATION retained_intron ENSMUSG00000029703 Lrwd1 ENSMUST00000142272 - NO_TRANSLATION retained_intron ENSMUSG00000029703 Lrwd1 ENSMUST00000148475 - NO_TRANSLATION retained_intron ENSMUSG00000029703 Lrwd1 ENSMUST00000149673 - NO_TRANSLATION retained_intron ENSMUSG00000029188 Slc34a2 ENSMUST00000170523 ENSMUSP00000130692 TRANSLATION protein_coding stop - 3 186.0 0.0 0.0 0.0 53.9 2.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029188 Slc34a2 ENSMUST00000094787 ENSMUSP00000092380 TRANSLATION protein_coding - CCDS19291.1 1 697.0 0.0 0.0 8.4 133.3 9.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000029188 Slc34a2 ENSMUST00000147243 - NO_TRANSLATION retained_intron ENSMUSG00000118332 Fam220a ENSMUST00000067145 ENSMUSP00000063424 TRANSLATION protein_coding - CCDS51690.1 1 260.0 0.0 0.0 0.0 242.5 0.0 -2,-4 0.8955 - 6.0 PRINCIPAL:1 ENSMUSG00000118332 Fam220a ENSMUST00000101434 ENSMUSP00000117552 TRANSLATION nonsense_mediated_decay - - 1 68.0 0.0 0.0 14.1 130.5 0.0 -2,2 0.9538 - -2.0 MINOR ENSMUSG00000118332 Fam220a ENSMUST00000169329 ENSMUSP00000126480 TRANSLATION protein_coding - CCDS51690.1 1 260.0 0.0 0.0 0.0 242.5 0.0 -2,-4 0.8955 - 6.0 PRINCIPAL:1 ENSMUSG00000118332 Fam220a ENSMUST00000118121 ENSMUSP00000112767 TRANSLATION protein_coding - - 1 68.0 0.0 0.0 14.1 130.5 0.0 -2,2 0.9538 - 3.196 MINOR ENSMUSG00000118332 Fam220a ENSMUST00000119488 ENSMUSP00000114024 TRANSLATION protein_coding - - 1 68.0 0.0 0.0 17.4 135.6 0.0 -2,2 1.0 - 4.0 MINOR ENSMUSG00000029250 Polr2b ENSMUST00000132134 - NO_TRANSLATION retained_intron ENSMUSG00000029250 Polr2b ENSMUST00000150191 - NO_TRANSLATION retained_intron ENSMUSG00000029250 Polr2b ENSMUST00000138121 - NO_TRANSLATION retained_intron ENSMUSG00000029250 Polr2b ENSMUST00000031167 ENSMUSP00000031167 TRANSLATION protein_coding - CCDS51528.1 1 1174.0 9.0 23.5 33.0 1194.5 0.0 -4,-5 1.0 33 22.0 PRINCIPAL:1 ENSMUSG00000029600 Rita1 ENSMUST00000177800 ENSMUSP00000136946 TRANSLATION protein_coding - CCDS51635.1 5 253.0 0.0 0.0 0.4 340.2 0.0 -4,-1 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000029600 Rita1 ENSMUST00000147596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029600 Rita1 ENSMUST00000136070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029600 Rita1 ENSMUST00000031599 ENSMUSP00000031599 TRANSLATION protein_coding - CCDS51635.1 1 253.0 0.0 0.0 0.4 340.2 0.0 -4,-1 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000029600 Rita1 ENSMUST00000111884 ENSMUSP00000107515 TRANSLATION protein_coding - - 2 103.0 0.0 0.0 0.0 131.8 0.0 -4,-1 0.0 - 0.0 MINOR ENSMUSG00000029600 Rita1 ENSMUST00000156356 ENSMUSP00000122910 TRANSLATION protein_coding start - 5 91.0 0.0 0.0 0.0 125.5 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000029600 Rita1 ENSMUST00000140554 ENSMUSP00000116344 TRANSLATION protein_coding stop - 5 107.0 0.0 0.0 0.0 173.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000037053 Azgp1 ENSMUST00000199145 - NO_TRANSLATION retained_intron ENSMUSG00000037053 Azgp1 ENSMUST00000035390 ENSMUSP00000038559 TRANSLATION protein_coding - CCDS19783.1 1 307.0 0.0 4.599 0.0 230.7 0.0 2,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000037053 Azgp1 ENSMUST00000197571 ENSMUSP00000142385 TRANSLATION nonsense_mediated_decay - - 2 56.0 0.0 0.099 0.0 0.0 0.0 0,-2 0.0 - -2.0 MINOR ENSMUSG00000111375 Btbd8 ENSMUST00000060553 ENSMUSP00000056529 TRANSLATION protein_coding - CCDS51585.1 1 443.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.055 15 0.0 MINOR ENSMUSG00000111375 Btbd8 ENSMUST00000211896 ENSMUSP00000148277 TRANSLATION protein_coding - - 5 1751.0 0.0 3.555 0.0 198.8 0.0 -3,-6 1.0 24 12.0 PRINCIPAL:1 ENSMUSG00000111375 Btbd8 ENSMUST00000100951 ENSMUSP00000098511 TRANSLATION protein_coding - - 5 1239.0 0.0 0.0 0.0 76.5 0.0 -4,-5 0.0311 24 0.0 MINOR ENSMUSG00000111375 Btbd8 ENSMUST00000162298 ENSMUSP00000149290 TRANSLATION protein_coding - - 5 251.0 0.0 2.1 0.0 86.6 0.0 -3,-6 0.0006 - 3.09 MINOR ENSMUSG00000111375 Btbd8 ENSMUST00000133800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000111375 Btbd8 ENSMUST00000152474 ENSMUSP00000114881 TRANSLATION protein_coding stop - 1 405.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0037 9 -2.0 MINOR ENSMUSG00000111375 Btbd8 ENSMUST00000212858 - NO_TRANSLATION retained_intron ENSMUSG00000029345 Tfip11 ENSMUST00000198238 ENSMUSP00000142844 TRANSLATION protein_coding stop - 3 93.0 0.0 0.8 0.0 64.4 0.0 -4,-5 0.0301 2 -2.0 MINOR ENSMUSG00000029345 Tfip11 ENSMUST00000129528 ENSMUSP00000115225 TRANSLATION protein_coding stop - 3 70.0 0.0 0.0 0.0 72.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029345 Tfip11 ENSMUST00000031288 ENSMUSP00000031288 TRANSLATION protein_coding - CCDS19539.1 1 838.0 0.0 0.8 12.6 496.4 0.0 -4,-5 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000029345 Tfip11 ENSMUST00000126736 - NO_TRANSLATION retained_intron ENSMUSG00000014956 Ppp1cb ENSMUST00000202078 ENSMUSP00000144167 TRANSLATION protein_coding - - 5 59.0 1.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000014956 Ppp1cb ENSMUST00000201880 ENSMUSP00000144350 TRANSLATION nonsense_mediated_decay start - 5 100.0 1.0 2.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000014956 Ppp1cb ENSMUST00000201360 ENSMUSP00000144047 TRANSLATION nonsense_mediated_decay - CCDS19193.1 1 327.0 10.0 7.45 31.2 208.1 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000014956 Ppp1cb ENSMUST00000201207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014956 Ppp1cb ENSMUST00000015100 ENSMUSP00000015100 TRANSLATION protein_coding - CCDS19193.1 1 327.0 10.0 7.45 31.2 208.1 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000014956 Ppp1cb ENSMUST00000201600 - NO_TRANSLATION retained_intron ENSMUSG00000034040 Galnt17 ENSMUST00000162966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034040 Galnt17 ENSMUST00000161228 - NO_TRANSLATION retained_intron ENSMUSG00000034040 Galnt17 ENSMUST00000086023 ENSMUSP00000083187 TRANSLATION protein_coding - CCDS39296.1 1 598.0 13.0 10.0 22.2 166.1 1.0 -1,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000034040 Galnt17 ENSMUST00000160609 ENSMUSP00000125395 TRANSLATION protein_coding - - 5 371.0 12.0 5.0 0.0 102.2 1.0 -1,-6 0.0015 5 7.5 MINOR ENSMUSG00000034040 Galnt17 ENSMUST00000160807 - NO_TRANSLATION retained_intron ENSMUSG00000039106 Htr5a ENSMUST00000036227 ENSMUSP00000038884 TRANSLATION protein_coding - CCDS19141.1 1 357.0 0.0 1.1 14.3 234.9 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000029482 Aacs ENSMUST00000031445 ENSMUSP00000031445 TRANSLATION protein_coding - CCDS19687.1 1 672.0 22.0 16.75 17.3 187.2 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000029482 Aacs ENSMUST00000131355 - NO_TRANSLATION retained_intron ENSMUSG00000029482 Aacs ENSMUST00000144361 - NO_TRANSLATION retained_intron ENSMUSG00000029482 Aacs ENSMUST00000200286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029482 Aacs ENSMUST00000199978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029482 Aacs ENSMUST00000196556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015804 Med28 ENSMUST00000139586 - NO_TRANSLATION retained_intron ENSMUSG00000015804 Med28 ENSMUST00000118833 ENSMUSP00000113027 TRANSLATION protein_coding - - 2 82.0 0.0 1.55 0.0 0.0 0.0 -4,-7 0.0 - 1.338 MINOR ENSMUSG00000015804 Med28 ENSMUST00000119579 ENSMUSP00000112418 TRANSLATION protein_coding - - 3 118.0 0.0 2.13 0.0 0.0 0.0 -4,-7 0.0 3 2.502 MINOR ENSMUSG00000015804 Med28 ENSMUST00000156481 ENSMUSP00000115882 TRANSLATION protein_coding - CCDS19275.1 1 178.0 0.0 3.88 24.0 64.3 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000015804 Med28 ENSMUST00000015948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039883 Lrrc17 ENSMUST00000035651 ENSMUSP00000038569 TRANSLATION protein_coding - CCDS51428.1 1 443.0 0.0 1.9 13.1 91.1 0.0 4,2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000039883 Lrrc17 ENSMUST00000199277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029614 Rpl6 ENSMUST00000197044 - NO_TRANSLATION retained_intron ENSMUSG00000029614 Rpl6 ENSMUST00000140515 - NO_TRANSLATION retained_intron ENSMUSG00000029614 Rpl6 ENSMUST00000124330 - NO_TRANSLATION retained_intron ENSMUSG00000029614 Rpl6 ENSMUST00000201155 ENSMUSP00000143981 TRANSLATION nonsense_mediated_decay start - 5 74.0 0.0 1.25 0.0 0.0 0.0 -4,0 0.0004 1 -2.0 MINOR ENSMUSG00000029614 Rpl6 ENSMUST00000031617 ENSMUSP00000031617 TRANSLATION protein_coding - CCDS19632.1 1 296.0 0.0 5.43 4.3 261.5 0.0 -4,-5 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000029614 Rpl6 ENSMUST00000146579 - NO_TRANSLATION retained_intron ENSMUSG00000029614 Rpl6 ENSMUST00000139177 - NO_TRANSLATION retained_intron ENSMUSG00000029614 Rpl6 ENSMUST00000138621 - NO_TRANSLATION retained_intron ENSMUSG00000002297 Dbf4 ENSMUST00000168637 - NO_TRANSLATION retained_intron ENSMUSG00000002297 Dbf4 ENSMUST00000002368 ENSMUSP00000002368 TRANSLATION protein_coding - CCDS57324.1 1 662.0 4.0 1.95 0.0 88.6 0.0 -4,-6 0.9402 - 12.0 ALTERNATIVE:2 ENSMUSG00000002297 Dbf4 ENSMUST00000170927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002297 Dbf4 ENSMUST00000163141 ENSMUSP00000129317 TRANSLATION protein_coding start - 5 114.0 4.0 1.8 0.0 66.3 0.0 -4,-5 0.0032 - -2.0 MINOR ENSMUSG00000002297 Dbf4 ENSMUST00000198785 - NO_TRANSLATION retained_intron ENSMUSG00000002297 Dbf4 ENSMUST00000171808 ENSMUSP00000132906 TRANSLATION protein_coding - CCDS19081.1 1 663.0 4.0 1.95 0.0 88.6 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000002297 Dbf4 ENSMUST00000166364 - NO_TRANSLATION retained_intron ENSMUSG00000002297 Dbf4 ENSMUST00000197442 - NO_TRANSLATION retained_intron ENSMUSG00000002297 Dbf4 ENSMUST00000168500 ENSMUSP00000132985 TRANSLATION protein_coding - - 5 356.0 2.0 0.95 0.0 22.3 0.0 -4,-6 0.0007 - 4.922 MINOR ENSMUSG00000063157 Csn2 ENSMUST00000199716 - NO_TRANSLATION retained_intron ENSMUSG00000063157 Csn2 ENSMUST00000196869 ENSMUSP00000142971 TRANSLATION protein_coding - CCDS80315.1 5 215.0 0.0 0.0 0.0 71.6 0.0 4,-1 0.2939 - 2.0 ALTERNATIVE:2 ENSMUSG00000063157 Csn2 ENSMUST00000198057 ENSMUSP00000143709 TRANSLATION protein_coding - CCDS80317.1 5 230.0 0.0 0.0 0.1 71.6 0.0 4,-1 0.6157 - 2.0 ALTERNATIVE:2 ENSMUSG00000063157 Csn2 ENSMUST00000199624 ENSMUSP00000143409 TRANSLATION protein_coding - CCDS39131.1 5 231.0 0.0 0.0 0.1 71.6 0.0 4,-1 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000063157 Csn2 ENSMUST00000082370 ENSMUSP00000080976 TRANSLATION protein_coding - CCDS80317.1 1 230.0 0.0 0.0 0.1 71.6 0.0 4,-1 0.6157 - 2.0 ALTERNATIVE:2 ENSMUSG00000063157 Csn2 ENSMUST00000197281 - NO_TRANSLATION retained_intron ENSMUSG00000063157 Csn2 ENSMUST00000200627 - NO_TRANSLATION retained_intron ENSMUSG00000063157 Csn2 ENSMUST00000196664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063157 Csn2 ENSMUST00000197422 ENSMUSP00000143341 TRANSLATION protein_coding - CCDS39131.1 1 231.0 0.0 0.0 0.1 71.6 0.0 4,-1 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000063157 Csn2 ENSMUST00000196163 ENSMUSP00000142673 TRANSLATION protein_coding - - 5 223.0 0.0 0.0 0.3 71.6 0.0 3,-2 0.1414 - 2.0 ALTERNATIVE:2 ENSMUSG00000063157 Csn2 ENSMUST00000197687 - NO_TRANSLATION retained_intron ENSMUSG00000032754 Slc8b1 ENSMUST00000068326 ENSMUSP00000064714 TRANSLATION protein_coding - CCDS39238.1 1 585.0 0.0 3.594 7.3 175.7 17.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000032754 Slc8b1 ENSMUST00000111889 ENSMUSP00000107520 TRANSLATION protein_coding - - 5 529.0 0.0 2.594 1.3 160.0 14.0 3,-2 0.043 1 9.156 MINOR ENSMUSG00000032754 Slc8b1 ENSMUST00000111890 ENSMUSP00000107521 TRANSLATION protein_coding - CCDS51634.1 1 568.0 0.0 3.094 0.0 139.7 17.0 3,-2 0.1029 - 8.838 MINOR ENSMUSG00000032754 Slc8b1 ENSMUST00000140329 ENSMUSP00000117260 TRANSLATION protein_coding stop - 3 92.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000032754 Slc8b1 ENSMUST00000147496 ENSMUSP00000120947 TRANSLATION protein_coding stop - 5 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0219 - -2.0 MINOR ENSMUSG00000032754 Slc8b1 ENSMUST00000076051 ENSMUSP00000075428 TRANSLATION protein_coding - CCDS51633.1 1 552.0 0.0 3.594 0.0 111.4 12.0 3,-2 0.1532 1 8.142 MINOR ENSMUSG00000032754 Slc8b1 ENSMUST00000123326 - NO_TRANSLATION retained_intron ENSMUSG00000055385 Rnf212 ENSMUST00000196652 ENSMUSP00000143556 TRANSLATION protein_coding - - 2 99.0 0.0 0.2 0.0 0.0 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000055385 Rnf212 ENSMUST00000197384 ENSMUSP00000142368 TRANSLATION protein_coding stop - 1 179.0 0.0 0.2 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000055385 Rnf212 ENSMUST00000212176 ENSMUSP00000148512 TRANSLATION nonsense_mediated_decay - - 5 60.0 8.0 1.75 0.0 40.5 0.0 -4,0 0.016 - -2.0 MINOR ENSMUSG00000055385 Rnf212 ENSMUST00000068946 ENSMUSP00000063525 TRANSLATION protein_coding - - 5 95.0 0.0 0.2 0.0 0.0 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000055385 Rnf212 ENSMUST00000212212 ENSMUSP00000148758 TRANSLATION protein_coding - - 5 307.0 8.0 4.45 0.4 40.5 0.0 -4,0 0.762 - 18.0 PRINCIPAL:1 ENSMUSG00000055385 Rnf212 ENSMUST00000200159 ENSMUSP00000143229 TRANSLATION protein_coding stop - 5 93.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0005 - -2.0 MINOR ENSMUSG00000079278 Tmem233 ENSMUST00000111997 ENSMUSP00000107628 TRANSLATION protein_coding - - 2 110.0 0.0 0.0 16.1 73.6 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000015806 Qdpr ENSMUST00000117425 ENSMUSP00000112469 TRANSLATION protein_coding - - 3 189.0 19.0 5.66 1.1 0.0 0.0 -4,-5 0.0055 13 2.518 MINOR ENSMUSG00000015806 Qdpr ENSMUST00000120867 ENSMUSP00000113203 TRANSLATION protein_coding - - 5 189.0 19.0 5.66 1.1 0.0 0.0 -4,-5 0.0055 13 2.518 MINOR ENSMUSG00000015806 Qdpr ENSMUST00000118097 ENSMUSP00000113958 TRANSLATION protein_coding - - 5 189.0 19.0 5.66 1.1 0.0 0.0 -4,-5 0.0055 13 2.518 MINOR ENSMUSG00000015806 Qdpr ENSMUST00000149290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015806 Qdpr ENSMUST00000154962 ENSMUSP00000122081 TRANSLATION protein_coding stop - 3 159.0 15.0 4.28 0.0 0.0 0.0 -4,-1 0.0 8 -2.0 MINOR ENSMUSG00000015806 Qdpr ENSMUST00000198258 ENSMUSP00000143741 TRANSLATION protein_coding - - 5 139.0 15.0 4.0 0.0 0.0 0.0 -4,-7 0.0 9 0.0 MINOR ENSMUSG00000015806 Qdpr ENSMUST00000200259 - NO_TRANSLATION retained_intron ENSMUSG00000015806 Qdpr ENSMUST00000015950 ENSMUSP00000015950 TRANSLATION protein_coding - CCDS19272.1 1 241.0 29.0 7.41 25.4 30.5 0.0 -4,0 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000015806 Qdpr ENSMUST00000127562 ENSMUSP00000115453 TRANSLATION protein_coding stop - 5 136.0 15.0 3.41 0.0 0.0 0.0 -4,-1 0.0001 5 -2.0 MINOR ENSMUSG00000015806 Qdpr ENSMUST00000197946 ENSMUSP00000143584 TRANSLATION protein_coding - - 5 213.0 25.0 6.66 0.0 0.0 0.0 -4,0 0.0044 12 7.836 MINOR ENSMUSG00000029149 Krtcap3 ENSMUST00000201333 - NO_TRANSLATION retained_intron ENSMUSG00000029149 Krtcap3 ENSMUST00000201393 - NO_TRANSLATION retained_intron ENSMUSG00000029149 Krtcap3 ENSMUST00000201937 ENSMUSP00000144464 TRANSLATION protein_coding - CCDS51459.1 5 240.0 0.0 0.0 9.6 237.7 4.0 -4,-2 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000029149 Krtcap3 ENSMUST00000201625 ENSMUSP00000144052 TRANSLATION protein_coding - CCDS51459.1 5 240.0 0.0 0.0 9.6 237.7 4.0 -4,-2 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000029149 Krtcap3 ENSMUST00000201672 - NO_TRANSLATION retained_intron ENSMUSG00000029149 Krtcap3 ENSMUST00000054829 ENSMUSP00000060414 TRANSLATION protein_coding - CCDS51459.1 1 240.0 0.0 0.0 9.6 237.7 4.0 -4,-2 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000029149 Krtcap3 ENSMUST00000201565 - NO_TRANSLATION retained_intron ENSMUSG00000029149 Krtcap3 ENSMUST00000201697 - NO_TRANSLATION retained_intron ENSMUSG00000029149 Krtcap3 ENSMUST00000202384 - NO_TRANSLATION retained_intron ENSMUSG00000029149 Krtcap3 ENSMUST00000202007 - NO_TRANSLATION retained_intron ENSMUSG00000079173 Zan ENSMUST00000150470 ENSMUSP00000114562 TRANSLATION nonsense_mediated_decay start - 3 74.0 0.0 0.0 0.0 38.4 0.0 -4,-5 0.0088 1 -2.0 MINOR ENSMUSG00000079173 Zan ENSMUST00000117564 ENSMUSP00000114068 TRANSLATION protein_coding - CCDS51672.1 5 5420.0 0.0 7.421 0.0 3423.1 0.0 4,-1 1.0 49 12.0 PRINCIPAL:1 ENSMUSG00000079173 Zan ENSMUST00000130056 - NO_TRANSLATION retained_intron ENSMUSG00000079173 Zan ENSMUST00000197503 - NO_TRANSLATION retained_intron ENSMUSG00000079173 Zan ENSMUST00000164178 ENSMUSP00000132895 TRANSLATION protein_coding - CCDS51672.1 5 5420.0 0.0 7.421 0.0 3423.1 0.0 4,-1 1.0 49 12.0 PRINCIPAL:1 ENSMUSG00000039753 Fbxl5 ENSMUST00000114047 ENSMUSP00000109681 TRANSLATION protein_coding - - 1 684.0 0.0 6.8355 0.0 83.1 0.0 -4,-5 0.0374 - 6.034 MINOR ENSMUSG00000039753 Fbxl5 ENSMUST00000196483 ENSMUSP00000143703 TRANSLATION protein_coding - - 1 689.0 0.0 7.6185 10.6 115.0 0.0 -4,-5 0.8504 - 11.0 ALTERNATIVE:1 ENSMUSG00000039753 Fbxl5 ENSMUST00000141902 ENSMUSP00000120338 TRANSLATION protein_coding start - 5 611.0 0.0 5.3355 0.0 83.1 0.0 -4,-5 0.0017 - -2.0 MINOR ENSMUSG00000039753 Fbxl5 ENSMUST00000121736 ENSMUSP00000112444 TRANSLATION protein_coding - - 1 580.0 0.0 5.648 0.0 72.9 0.0 -4,-5 0.0 - 3.058 MINOR ENSMUSG00000039753 Fbxl5 ENSMUST00000087465 ENSMUSP00000084733 TRANSLATION protein_coding - CCDS19263.1 1 623.0 0.0 6.898 0.0 104.8 0.0 -4,-5 0.0388 - 5.96 MINOR ENSMUSG00000039753 Fbxl5 ENSMUST00000199055 ENSMUSP00000142582 TRANSLATION protein_coding stop - 5 107.0 0.0 2.75 0.0 26.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039753 Fbxl5 ENSMUST00000140469 - NO_TRANSLATION retained_intron ENSMUSG00000039753 Fbxl5 ENSMUST00000124610 ENSMUSP00000116720 TRANSLATION protein_coding - - 5 679.0 0.0 7.398 0.0 115.0 0.0 -4,-5 0.0943 - 7.556 MINOR ENSMUSG00000039753 Fbxl5 ENSMUST00000119523 ENSMUSP00000113557 TRANSLATION protein_coding - - 5 673.0 0.0 7.0855 1.0 83.1 0.0 -4,-5 0.0626 - 6.532 MINOR ENSMUSG00000039753 Fbxl5 ENSMUST00000124421 - NO_TRANSLATION retained_intron ENSMUSG00000039753 Fbxl5 ENSMUST00000047857 ENSMUSP00000045792 TRANSLATION protein_coding - CCDS51489.1 1 690.0 0.0 7.5855 10.6 115.0 0.0 -4,-5 1.0 - 10.934 PRINCIPAL:4 ENSMUSG00000039753 Fbxl5 ENSMUST00000143316 - NO_TRANSLATION retained_intron ENSMUSG00000061906 Ugt2b38 ENSMUST00000072818 ENSMUSP00000072598 TRANSLATION protein_coding - CCDS19388.1 1 530.0 16.0 6.0 8.8 839.6 0.0 1,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000066551 Hmgb1 ENSMUST00000110505 ENSMUSP00000106132 TRANSLATION protein_coding - CCDS19883.1 1 215.0 0.0 4.68 9.2 193.9 0.0 -4,-6 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000066551 Hmgb1 ENSMUST00000139443 ENSMUSP00000144129 TRANSLATION protein_coding - - 2 171.0 0.0 4.33 0.0 188.2 0.0 -4,-6 0.0042 12 10.956 MINOR ENSMUSG00000066551 Hmgb1 ENSMUST00000133667 - NO_TRANSLATION retained_intron ENSMUSG00000066551 Hmgb1 ENSMUST00000085546 ENSMUSP00000082682 TRANSLATION protein_coding - CCDS19883.1 1 215.0 0.0 4.68 9.2 193.9 0.0 -4,-6 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000066551 Hmgb1 ENSMUST00000125605 ENSMUSP00000114515 TRANSLATION protein_coding stop - 5 92.0 0.0 2.0 0.0 99.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000066551 Hmgb1 ENSMUST00000138553 ENSMUSP00000118733 TRANSLATION protein_coding stop - 2 124.0 0.0 3.08 0.0 135.2 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000066551 Hmgb1 ENSMUST00000202133 ENSMUSP00000144412 TRANSLATION protein_coding stop - 3 211.0 0.0 4.68 0.0 193.9 0.0 -4,-5 0.0574 12 -2.0 MINOR ENSMUSG00000066551 Hmgb1 ENSMUST00000093196 ENSMUSP00000106131 TRANSLATION protein_coding - CCDS19883.1 1 215.0 0.0 4.68 9.2 193.9 0.0 -4,-6 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000066551 Hmgb1 ENSMUST00000155086 - NO_TRANSLATION retained_intron ENSMUSG00000066551 Hmgb1 ENSMUST00000123645 - NO_TRANSLATION retained_intron ENSMUSG00000029430 Ran ENSMUST00000031383 ENSMUSP00000031383 TRANSLATION protein_coding - CCDS19693.1 1 216.0 21.0 4.75 33.2 168.8 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000029430 Ran ENSMUST00000134632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029430 Ran ENSMUST00000111343 ENSMUSP00000106975 TRANSLATION protein_coding - CCDS19693.1 1 216.0 21.0 4.75 33.2 168.8 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000042476 Abcb4 ENSMUST00000199954 - NO_TRANSLATION retained_intron ENSMUSG00000042476 Abcb4 ENSMUST00000003717 ENSMUSP00000003717 TRANSLATION protein_coding - CCDS19086.1 1 1276.0 12.0 23.23 7.4 815.5 11.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000042476 Abcb4 ENSMUST00000197150 - NO_TRANSLATION retained_intron ENSMUSG00000042476 Abcb4 ENSMUST00000197458 - NO_TRANSLATION retained_intron ENSMUSG00000042476 Abcb4 ENSMUST00000196067 ENSMUSP00000142425 TRANSLATION protein_coding stop - 1 882.0 12.0 15.9 0.0 596.2 10.0 -4,-5 0.0114 3 -2.0 MINOR ENSMUSG00000033615 Cplx1 ENSMUST00000046892 ENSMUSP00000038502 TRANSLATION protein_coding - CCDS39206.1 1 134.0 0.0 1.6 36.9 145.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000033615 Cplx1 ENSMUST00000129040 ENSMUSP00000118118 TRANSLATION protein_coding stop - 3 76.0 0.0 1.6 0.0 83.2 0.0 -4,-5 0.0163 1 -2.0 MINOR ENSMUSG00000029417 Cxcl9 ENSMUST00000113093 ENSMUSP00000108716 TRANSLATION protein_coding - CCDS39152.1 1 126.0 0.0 3.5 0.0 62.4 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029417 Cxcl9 ENSMUST00000202404 - NO_TRANSLATION retained_intron ENSMUSG00000060204 Slc10a4-ps ENSMUST00000031124 ENSMUSP00000031124 TRANSLATION protein_coding - CCDS39110.1 1 145.0 0.0 2.0 0.0 0.0 0.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060204 Slc10a4-ps ENSMUST00000239243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060204 Slc10a4-ps ENSMUST00000239348 - NO_TRANSLATION unprocessed_pseudogene ENSMUSG00000044681 Cnpy1 ENSMUST00000141601 ENSMUSP00000122171 TRANSLATION protein_coding - - 1 145.0 0.0 3.96 4.7 102.2 0.0 -4,-5 1.0 - 13.422 PRINCIPAL:1 ENSMUSG00000044681 Cnpy1 ENSMUST00000141196 ENSMUSP00000116024 TRANSLATION protein_coding stop - 5 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044681 Cnpy1 ENSMUST00000118882 ENSMUSP00000113944 TRANSLATION protein_coding - CCDS80237.1 1 94.0 0.0 2.66 8.8 43.5 0.0 -4,-5 0.8402 - 8.88 MINOR ENSMUSG00000044681 Cnpy1 ENSMUST00000120068 ENSMUSP00000112773 TRANSLATION protein_coding - - 1 173.0 0.0 2.33 0.0 38.0 1.0 -4,-5 0.0013 - 4.89 MINOR ENSMUSG00000044681 Cnpy1 ENSMUST00000117098 ENSMUSP00000113956 TRANSLATION protein_coding - - 1 173.0 0.0 2.33 0.0 38.0 1.0 -4,-5 0.0013 - 4.89 MINOR ENSMUSG00000038204 Asb10 ENSMUST00000119657 ENSMUSP00000113328 TRANSLATION protein_coding - - 5 429.0 0.0 2.6 1.0 154.7 0.0 -4,-5 0.1218 2 10.398 MINOR ENSMUSG00000038204 Asb10 ENSMUST00000117900 ENSMUSP00000112743 TRANSLATION protein_coding - CCDS80229.1 5 452.0 0.0 3.4 5.3 154.7 0.0 -4,0 0.8406 1 13.632 MINOR ENSMUSG00000038204 Asb10 ENSMUST00000048302 ENSMUSP00000041539 TRANSLATION protein_coding - CCDS19124.1 1 467.0 0.0 3.4 8.9 154.7 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000063656 Gm10135 ENSMUST00000043711 ENSMUSP00000049347 TRANSLATION protein_coding start - 5 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000121597 ENSMUSG00000121597 ENSMUST00000249394 ENSMUSP00000159751 TRANSLATION protein_coding,RT - - - 525.0 60.0 1.0 0.3 373.9 0.0 -4,-5 0.8378 - -2.0 PRINCIPAL:1 ENSMUSG00000029538 Srsf9 ENSMUST00000209604 ENSMUSP00000147772 TRANSLATION nonsense_mediated_decay start - 5 62.0 0.0 1.0 0.0 27.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029538 Srsf9 ENSMUST00000031513 ENSMUSP00000031513 TRANSLATION protein_coding - CCDS19587.1 1 222.0 0.0 4.6 9.8 112.8 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000029538 Srsf9 ENSMUST00000144000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029538 Srsf9 ENSMUST00000149510 ENSMUSP00000121845 TRANSLATION protein_coding start - 3 158.0 0.0 1.5 0.0 42.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029538 Srsf9 ENSMUST00000142318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054892 Txk ENSMUST00000198970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054892 Txk ENSMUST00000169534 ENSMUSP00000129397 TRANSLATION protein_coding - CCDS19334.1 1 527.0 18.0 8.72 9.2 437.1 0.0 -4,-7 1.0 2 17.0 PRINCIPAL:4 ENSMUSG00000054892 Txk ENSMUST00000198798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054892 Txk ENSMUST00000198464 ENSMUSP00000143002 TRANSLATION protein_coding - CCDS80298.1 1 473.0 18.0 8.72 0.0 437.1 0.0 -4,-7 0.0982 2 14.0 MINOR ENSMUSG00000054892 Txk ENSMUST00000197923 - NO_TRANSLATION retained_intron ENSMUSG00000054892 Txk ENSMUST00000197843 - NO_TRANSLATION retained_intron ENSMUSG00000054892 Txk ENSMUST00000113604 ENSMUSP00000109234 TRANSLATION protein_coding - CCDS51514.1 1 527.0 18.0 8.72 8.1 437.1 0.0 -4,-2 0.9887 2 16.598 ALTERNATIVE:1 ENSMUSG00000054892 Txk ENSMUST00000197313 ENSMUSP00000143476 TRANSLATION protein_coding - CCDS80299.1 1 505.0 18.0 8.12 3.0 427.3 0.0 -4,-2 0.2132 1 13.198 MINOR ENSMUSG00000029541 Cyp2w1 ENSMUST00000200478 - NO_TRANSLATION retained_intron ENSMUSG00000029541 Cyp2w1 ENSMUST00000031521 ENSMUSP00000031521 TRANSLATION protein_coding - CCDS51683.1 5 493.0 27.0 9.6 0.1 367.4 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000029541 Cyp2w1 ENSMUST00000197955 ENSMUSP00000143138 TRANSLATION protein_coding start/stop - 3 200.0 12.0 4.25 0.0 150.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000091879 Vmn2r17 ENSMUST00000171841 ENSMUSP00000131450 TRANSLATION protein_coding - CCDS51603.1 5 849.0 4.0 2.478 0.4 355.8 9.0 1,-3 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000091879 Vmn2r17 ENSMUST00000232748 - NO_TRANSLATION retained_intron ENSMUSG00000091879 Vmn2r17 ENSMUST00000233038 ENSMUSP00000156506 TRANSLATION protein_coding - - - 556.0 2.0 1.998 0.0 142.8 0.0 1,-3 0.0023 - 7.236 MINOR ENSMUSG00000091879 Vmn2r17 ENSMUST00000233536 ENSMUSP00000156549 TRANSLATION protein_coding - - - 768.0 4.0 2.412 0.0 356.4 9.0 -4,-7 0.1231 - 11.838 ALTERNATIVE:2 ENSMUSG00000091879 Vmn2r17 ENSMUST00000232833 ENSMUSP00000156483 TRANSLATION protein_coding - - - 769.0 4.0 2.412 0.0 355.8 9.0 -4,-7 0.111 - 11.838 ALTERNATIVE:2 ENSMUSG00000091879 Vmn2r17 ENSMUST00000232722 ENSMUSP00000156974 TRANSLATION protein_coding - - - 476.0 2.0 1.932 0.0 142.8 0.0 -4,-7 0.0 - 7.08 MINOR ENSMUSG00000091879 Vmn2r17 ENSMUST00000233724 ENSMUSP00000156890 TRANSLATION protein_coding - - - 848.0 4.0 2.478 0.4 356.4 9.0 1,-3 0.7415 - 12.0 ALTERNATIVE:2 ENSMUSG00000029287 Tgfbr3 ENSMUST00000136882 ENSMUSP00000123644 TRANSLATION protein_coding start - 2 156.0 3.0 2.0 0.0 26.3 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029287 Tgfbr3 ENSMUST00000138469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029287 Tgfbr3 ENSMUST00000031224 ENSMUSP00000031224 TRANSLATION protein_coding - CCDS19499.1 1 850.0 3.0 8.93 0.0 155.5 1.0 1,-2 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000029287 Tgfbr3 ENSMUST00000146591 - NO_TRANSLATION retained_intron ENSMUSG00000029253 Cenpc1 ENSMUST00000198059 - NO_TRANSLATION retained_intron ENSMUSG00000029253 Cenpc1 ENSMUST00000199141 - NO_TRANSLATION retained_intron ENSMUSG00000029253 Cenpc1 ENSMUST00000031170 ENSMUSP00000031170 TRANSLATION protein_coding - CCDS39123.1 1 906.0 0.0 4.986 0.0 552.9 0.0 -4,-2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000029253 Cenpc1 ENSMUST00000199392 - NO_TRANSLATION retained_intron ENSMUSG00000072821 Pramel53 ENSMUST00000139828 ENSMUSP00000119594 TRANSLATION protein_coding - - 5 481.0 2.0 3.45 0.4 0.0 0.0 -4,-6 0.6447 - 8.0 PRINCIPAL:1 ENSMUSG00000072821 Pramel53 ENSMUST00000139102 ENSMUSP00000115801 TRANSLATION protein_coding stop - 3 165.0 0.0 1.4 0.0 0.0 0.0 -4,-6 0.0058 - -2.0 MINOR ENSMUSG00000054630 Ugt2b5 ENSMUST00000067790 ENSMUSP00000068282 TRANSLATION protein_coding - CCDS19385.3 1 530.0 16.0 6.0 8.8 854.6 0.0 1,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000037736 Limch1 ENSMUST00000238785 ENSMUSP00000158661 TRANSLATION protein_coding - - - 1511.0 8.0 3.632 0.1 301.0 0.0 -4,-6 0.1865 39 17.364 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000127184 ENSMUSP00000114681 TRANSLATION protein_coding stop - 5 237.0 0.0 0.0 0.0 191.3 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000122812 ENSMUSP00000144176 TRANSLATION protein_coding stop - 3 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000153174 ENSMUSP00000118979 TRANSLATION nonsense_mediated_decay start - 2 60.0 6.0 0.8 0.0 33.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000202830 - NO_TRANSLATION retained_intron ENSMUSG00000037736 Limch1 ENSMUST00000201322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037736 Limch1 ENSMUST00000117601 ENSMUSP00000113544 TRANSLATION protein_coding - - 5 898.0 8.0 1.0 1.0 261.9 0.0 -4,-5 0.0392 29 9.756 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000238993 ENSMUSP00000159044 TRANSLATION protein_coding - - - 927.0 8.0 1.0 3.8 261.9 0.0 -4,-5 0.322 29 11.312 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000118242 ENSMUSP00000112732 TRANSLATION protein_coding - - 5 1068.0 8.0 3.632 2.5 289.6 0.0 -4,-6 0.4559 36 17.514 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000130228 ENSMUSP00000116126 TRANSLATION nonsense_mediated_decay - - 5 83.0 0.0 1.4 0.0 34.7 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000135334 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037736 Limch1 ENSMUST00000132991 ENSMUSP00000123337 TRANSLATION protein_coding stop - 2 268.0 0.0 0.0 0.0 230.9 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000101164 ENSMUSP00000098723 TRANSLATION protein_coding - CCDS39102.1 5 1057.0 8.0 3.632 4.6 311.6 0.0 -4,-6 1.0 35 20.0 PRINCIPAL:1 ENSMUSG00000037736 Limch1 ENSMUST00000137394 - NO_TRANSLATION retained_intron ENSMUSG00000037736 Limch1 ENSMUST00000038188 ENSMUSP00000043163 TRANSLATION protein_coding - CCDS57347.1 1 901.0 8.0 1.0 3.9 261.9 0.0 -4,-5 0.284 29 11.368 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000201852 - NO_TRANSLATION retained_intron ENSMUSG00000037736 Limch1 ENSMUST00000119854 ENSMUSP00000112651 TRANSLATION protein_coding start - 1 774.0 8.0 1.0 0.0 205.7 0.0 -4,-7 0.0076 22 -2.0 MINOR ENSMUSG00000037736 Limch1 ENSMUST00000147050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037736 Limch1 ENSMUST00000140428 - NO_TRANSLATION retained_intron ENSMUSG00000037736 Limch1 ENSMUST00000202048 - NO_TRANSLATION retained_intron ENSMUSG00000037411 Serpine1 ENSMUST00000199832 - NO_TRANSLATION retained_intron ENSMUSG00000037411 Serpine1 ENSMUST00000041388 ENSMUSP00000039586 TRANSLATION protein_coding - CCDS19761.1 1 402.0 0.0 6.83 8.3 356.7 0.0 2,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000029465 Arpc3 ENSMUST00000111716 ENSMUSP00000107345 TRANSLATION protein_coding - - 2 161.0 0.0 4.45 0.0 227.2 0.0 -4,-6 0.0006 5 7.266 MINOR ENSMUSG00000029465 Arpc3 ENSMUST00000111713 ENSMUSP00000107342 TRANSLATION protein_coding - - 3 163.0 0.0 4.45 0.0 227.3 0.0 -4,-7 0.0002 5 7.272 MINOR ENSMUSG00000029465 Arpc3 ENSMUST00000102525 ENSMUSP00000099584 TRANSLATION protein_coding - CCDS19648.1 1 178.0 0.0 5.41 31.9 274.1 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000029465 Arpc3 ENSMUST00000141395 - NO_TRANSLATION retained_intron ENSMUSG00000029465 Arpc3 ENSMUST00000126247 - NO_TRANSLATION retained_intron ENSMUSG00000029465 Arpc3 ENSMUST00000196969 ENSMUSP00000143210 TRANSLATION protein_coding start - 3 142.0 0.0 4.0 0.0 212.0 0.0 -4,-7 0.0014 5 -2.0 MINOR ENSMUSG00000029465 Arpc3 ENSMUST00000148913 - NO_TRANSLATION retained_intron ENSMUSG00000029465 Arpc3 ENSMUST00000031421 ENSMUSP00000031421 TRANSLATION protein_coding - - 3 170.0 0.0 5.08 2.2 258.9 0.0 -4,-5 0.0818 7 10.584 MINOR ENSMUSG00000028998 Tomm7 ENSMUST00000030851 ENSMUSP00000030851 TRANSLATION protein_coding - CCDS39026.1 1 55.0 0.0 1.5 27.7 56.5 0.0 -3,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095550 Gm21671 ENSMUST00000162387 ENSMUSP00000133924 TRANSLATION protein_coding - CCDS59670.1 5 267.0 0.0 2.25 0.0 81.6 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000015942 Gtf2ird2 ENSMUST00000152587 ENSMUSP00000122822 TRANSLATION protein_coding start - 3 45.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015942 Gtf2ird2 ENSMUST00000201098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015942 Gtf2ird2 ENSMUST00000135588 ENSMUSP00000120962 TRANSLATION protein_coding start - 3 34.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015942 Gtf2ird2 ENSMUST00000016086 ENSMUSP00000016086 TRANSLATION protein_coding - CCDS19719.1 1 936.0 4.0 4.31 0.3 177.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000015942 Gtf2ird2 ENSMUST00000123941 ENSMUSP00000120792 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015942 Gtf2ird2 ENSMUST00000128842 - NO_TRANSLATION retained_intron ENSMUSG00000005220 Corin ENSMUST00000177290 ENSMUSP00000135511 TRANSLATION protein_coding - - 5 980.0 34.0 3.2725 0.0 647.7 4.0 -4,-2 0.2228 2 14.0 ALTERNATIVE:2 ENSMUSG00000005220 Corin ENSMUST00000175766 ENSMUSP00000135889 TRANSLATION protein_coding start - 5 972.0 24.0 3.2725 0.0 563.7 4.0 -4,-2 0.1396 2 -2.0 MINOR ENSMUSG00000005220 Corin ENSMUST00000176320 - NO_TRANSLATION retained_intron ENSMUSG00000005220 Corin ENSMUST00000005352 ENSMUSP00000005352 TRANSLATION protein_coding - CCDS19330.1 1 1113.0 34.0 3.2725 2.1 647.7 4.0 -4,0 1.0 2 15.0 PRINCIPAL:2 ENSMUSG00000005220 Corin ENSMUST00000176974 ENSMUSP00000135722 TRANSLATION protein_coding stop - 5 1007.0 28.0 3.2725 1.0 605.5 4.0 -4,-2 0.2754 2 -2.0 MINOR ENSMUSG00000005220 Corin ENSMUST00000176439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005220 Corin ENSMUST00000167460 ENSMUSP00000127389 TRANSLATION protein_coding - CCDS51513.1 1 1047.0 34.0 3.2725 1.4 647.7 4.0 -4,-2 0.5833 2 14.364 ALTERNATIVE:2 ENSMUSG00000029086 Prom1 ENSMUST00000197749 - NO_TRANSLATION retained_intron ENSMUSG00000029086 Prom1 ENSMUST00000074113 ENSMUSP00000073751 TRANSLATION protein_coding - CCDS51494.1 1 867.0 0.0 17.99 0.4 986.9 7.0 3,-2 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000029086 Prom1 ENSMUST00000197750 ENSMUSP00000142375 TRANSLATION protein_coding - CCDS51493.1 1 834.0 0.0 17.66 0.0 974.5 7.0 3,-2 0.3999 14 10.596 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000196853 - NO_TRANSLATION retained_intron ENSMUSG00000029086 Prom1 ENSMUST00000165909 ENSMUSP00000129909 TRANSLATION protein_coding - CCDS51492.1 1 827.0 0.0 17.66 0.1 974.5 7.0 3,-2 0.3888 15 10.596 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000179059 ENSMUSP00000137557 TRANSLATION protein_coding - CCDS51495.1 5 842.0 0.0 17.66 0.4 975.2 7.0 3,-2 0.4338 15 10.638 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000087442 ENSMUSP00000084709 TRANSLATION protein_coding - CCDS51493.1 1 834.0 0.0 17.66 0.0 974.5 7.0 3,-2 0.3999 14 10.596 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000196378 ENSMUSP00000142483 TRANSLATION protein_coding start - 5 63.0 0.0 1.5 0.0 62.4 2.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000196852 - NO_TRANSLATION retained_intron ENSMUSG00000029086 Prom1 ENSMUST00000177946 ENSMUSP00000136483 TRANSLATION protein_coding - CCDS51492.1 5 827.0 0.0 17.66 0.1 974.5 7.0 3,-2 0.3888 15 10.596 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000087441 ENSMUSP00000084707 TRANSLATION protein_coding - CCDS39082.1 1 858.0 0.0 17.66 0.4 974.5 7.0 3,-2 0.4615 14 10.596 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000030973 ENSMUSP00000030973 TRANSLATION protein_coding - CCDS51491.1 1 809.0 0.0 16.91 0.0 928.6 7.0 3,-2 0.227 14 6.342 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000196178 ENSMUSP00000143403 TRANSLATION protein_coding stop - 5 98.0 0.0 0.56 0.0 51.9 0.0 3,-2 0.0029 2 -2.0 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000198218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029086 Prom1 ENSMUST00000198347 ENSMUSP00000142677 TRANSLATION nonsense_mediated_decay start - 3 190.0 0.0 3.05 0.0 119.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000171543 ENSMUSP00000128978 TRANSLATION protein_coding - CCDS51495.1 1 842.0 0.0 17.66 0.4 975.2 7.0 3,-2 0.4338 15 10.638 MINOR ENSMUSG00000029086 Prom1 ENSMUST00000195942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029086 Prom1 ENSMUST00000199739 - NO_TRANSLATION retained_intron ENSMUSG00000029086 Prom1 ENSMUST00000197706 ENSMUSP00000142632 TRANSLATION protein_coding - CCDS80275.1 1 804.0 0.0 16.91 0.0 916.6 7.0 3,-2 0.2234 14 5.622 MINOR ENSMUSG00000029276 Glmn ENSMUST00000124546 ENSMUSP00000122129 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 1.5 0.0 44.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029276 Glmn ENSMUST00000124140 ENSMUSP00000123224 TRANSLATION protein_coding stop - 5 100.0 0.0 1.83 0.0 59.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029276 Glmn ENSMUST00000143113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029276 Glmn ENSMUST00000078021 ENSMUSP00000077168 TRANSLATION protein_coding - CCDS19505.1 1 596.0 0.0 9.16 11.4 327.2 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000029276 Glmn ENSMUST00000148505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029276 Glmn ENSMUST00000100949 ENSMUSP00000098509 TRANSLATION protein_coding - CCDS51587.1 1 532.0 0.0 8.66 0.0 210.1 0.0 -4,-5 0.0196 10 4.998 MINOR ENSMUSG00000029276 Glmn ENSMUST00000137939 - NO_TRANSLATION retained_intron ENSMUSG00000029276 Glmn ENSMUST00000082121 ENSMUSP00000080766 TRANSLATION protein_coding - CCDS19505.1 1 596.0 0.0 9.16 11.4 327.2 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000034462 Pkd2 ENSMUST00000130931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034462 Pkd2 ENSMUST00000086831 ENSMUSP00000084041 TRANSLATION protein_coding - CCDS19487.1 1 966.0 5.0 12.2 2.3 562.8 0.0 -4,-2 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000034462 Pkd2 ENSMUST00000133540 - NO_TRANSLATION retained_intron ENSMUSG00000029235 Pdcl2 ENSMUST00000122213 ENSMUSP00000113699 TRANSLATION protein_coding - CCDS80304.1 1 192.0 0.0 3.1 0.1 60.4 0.0 -4,-5 0.1004 1 11.796 MINOR ENSMUSG00000029235 Pdcl2 ENSMUST00000031145 ENSMUSP00000031145 TRANSLATION protein_coding - CCDS39116.1 1 240.0 0.0 3.1 10.0 62.5 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000034528 Hsd17b13 ENSMUST00000048118 ENSMUSP00000046772 TRANSLATION protein_coding - CCDS19480.1 1 304.0 27.0 6.0 0.0 158.1 1.0 -2,-5 0.167 7 16.5 MINOR ENSMUSG00000034528 Hsd17b13 ENSMUST00000120320 ENSMUSP00000113599 TRANSLATION protein_coding - - 5 264.0 23.0 5.75 0.0 99.3 1.0 -2,-5 0.0251 6 9.81 MINOR ENSMUSG00000034528 Hsd17b13 ENSMUST00000112803 ENSMUSP00000108422 TRANSLATION protein_coding - CCDS51576.1 1 300.0 27.0 6.75 13.1 158.1 1.0 -2,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000047215 Rpl9 ENSMUST00000127874 ENSMUSP00000115577 TRANSLATION protein_coding - - 1 108.0 0.0 2.83 0.0 59.8 0.0 -4,-5 0.0 - 3.18 MINOR ENSMUSG00000047215 Rpl9 ENSMUST00000147660 - NO_TRANSLATION retained_intron ENSMUSG00000047215 Rpl9 ENSMUST00000151917 - NO_TRANSLATION retained_intron ENSMUSG00000047215 Rpl9 ENSMUST00000120094 ENSMUSP00000113704 TRANSLATION protein_coding - CCDS39097.1 2 192.0 0.0 5.58 32.8 115.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047215 Rpl9 ENSMUST00000057885 ENSMUSP00000109399 TRANSLATION protein_coding - CCDS39097.1 1 192.0 0.0 5.58 32.8 115.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047215 Rpl9 ENSMUST00000196667 ENSMUSP00000142883 TRANSLATION protein_coding start - 3 191.0 0.0 5.58 32.8 115.1 0.0 -4,-5 0.8476 - -2.0 MINOR ENSMUSG00000047215 Rpl9 ENSMUST00000128074 - NO_TRANSLATION retained_intron ENSMUSG00000047215 Rpl9 ENSMUST00000118543 ENSMUSP00000113391 TRANSLATION protein_coding - - 2 166.0 0.0 4.58 0.0 95.4 0.0 -4,-5 0.0007 - 8.82 MINOR ENSMUSG00000047215 Rpl9 ENSMUST00000140879 - NO_TRANSLATION retained_intron ENSMUSG00000047215 Rpl9 ENSMUST00000147966 - NO_TRANSLATION retained_intron ENSMUSG00000047215 Rpl9 ENSMUST00000150815 ENSMUSP00000143264 TRANSLATION nonsense_mediated_decay start - 2 66.0 0.0 2.0 0.0 46.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000014529 Tmbim7 ENSMUST00000199959 ENSMUSP00000143241 TRANSLATION protein_coding stop - 5 125.0 0.0 2.75 0.0 0.0 7.0 -1,-5 0.0063 - -2.0 MINOR ENSMUSG00000014529 Tmbim7 ENSMUST00000156117 ENSMUSP00000117435 TRANSLATION protein_coding start - 1 206.0 0.0 4.58 0.0 65.3 11.0 -4,-5 0.0056 - -2.0 MINOR ENSMUSG00000014529 Tmbim7 ENSMUST00000014673 ENSMUSP00000014673 TRANSLATION protein_coding - CCDS19067.1 1 302.0 0.0 6.08 1.2 119.2 15.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000014529 Tmbim7 ENSMUST00000198739 ENSMUSP00000143399 TRANSLATION protein_coding - CCDS80202.1 1 224.0 0.0 5.58 0.0 108.2 14.0 -4,-7 0.0365 - 10.338 MINOR ENSMUSG00000014529 Tmbim7 ENSMUST00000115515 - NO_TRANSLATION retained_intron ENSMUSG00000054920 Klhl5 ENSMUST00000204479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054920 Klhl5 ENSMUST00000204097 ENSMUSP00000144976 TRANSLATION protein_coding - CCDS84883.1 1 568.0 0.0 9.5 30.8 514.7 0.0 -4,-5 1.0 8 11.7 ALTERNATIVE:1 ENSMUSG00000054920 Klhl5 ENSMUST00000203561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054920 Klhl5 ENSMUST00000204348 ENSMUSP00000144732 TRANSLATION protein_coding - - 5 647.0 0.0 8.5 1.0 483.1 0.0 -4,-7 0.0521 9 5.102 MINOR ENSMUSG00000054920 Klhl5 ENSMUST00000203538 ENSMUSP00000145269 TRANSLATION nonsense_mediated_decay start - 1 258.0 0.0 4.0 0.0 220.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000054920 Klhl5 ENSMUST00000204829 - NO_TRANSLATION retained_intron ENSMUSG00000054920 Klhl5 ENSMUST00000101191 ENSMUSP00000098752 TRANSLATION protein_coding - CCDS19305.2 1 708.0 0.0 9.65 20.4 514.7 0.0 -4,-7 0.8035 9 10.604 PRINCIPAL:3 ENSMUSG00000029587 Zfp12 ENSMUST00000160195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029587 Zfp12 ENSMUST00000077485 ENSMUSP00000076693 TRANSLATION protein_coding - CCDS19837.1 1 654.0 60.0 2.0 0.0 434.5 0.0 -4,-6 0.9174 2 14.0 PRINCIPAL:2 ENSMUSG00000029587 Zfp12 ENSMUST00000162861 ENSMUSP00000123731 TRANSLATION protein_coding stop - 3 47.0 0.0 1.0 0.0 81.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029587 Zfp12 ENSMUST00000075916 ENSMUSP00000137971 TRANSLATION nonsense_mediated_decay - - 1 72.0 0.0 1.15 0.0 83.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029587 Zfp12 ENSMUST00000032591 ENSMUSP00000032591 TRANSLATION protein_coding - CCDS71702.1 1 686.0 60.0 2.0 0.0 441.7 0.0 -4,-6 0.3232 2 14.0 ALTERNATIVE:2 ENSMUSG00000034842 Art3 ENSMUST00000145072 ENSMUSP00000116218 TRANSLATION protein_coding stop - 2 108.0 0.0 2.0 0.0 75.3 0.0 1,-2 0.0019 5 -2.0 MINOR ENSMUSG00000034842 Art3 ENSMUST00000117108 ENSMUSP00000113041 TRANSLATION protein_coding - - 5 383.0 0.0 5.976 0.0 211.2 1.0 1,-2 0.1649 12 8.0 ALTERNATIVE:2 ENSMUSG00000034842 Art3 ENSMUST00000120781 ENSMUSP00000113008 TRANSLATION protein_coding stop - 5 215.0 0.0 4.33 0.0 180.1 0.0 1,-2 0.0025 9 -2.0 MINOR ENSMUSG00000034842 Art3 ENSMUST00000121096 ENSMUSP00000113510 TRANSLATION protein_coding - CCDS80328.1 1 373.0 0.0 5.976 3.0 211.2 1.0 1,-2 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000034842 Art3 ENSMUST00000138003 ENSMUSP00000123571 TRANSLATION protein_coding start - 2 142.0 0.0 1.646 0.0 0.0 1.0 -4,-7 0.0016 5 -2.0 MINOR ENSMUSG00000034842 Art3 ENSMUST00000138687 ENSMUSP00000118746 TRANSLATION protein_coding stop - 3 65.0 0.0 1.0 0.0 28.3 0.0 1,-2 0.0029 - -2.0 MINOR ENSMUSG00000034842 Art3 ENSMUST00000120416 ENSMUSP00000113493 TRANSLATION protein_coding - - 1 408.0 0.0 5.976 0.0 211.2 0.0 1,-2 0.1165 10 8.0 ALTERNATIVE:2 ENSMUSG00000034842 Art3 ENSMUST00000113083 ENSMUSP00000108706 TRANSLATION protein_coding - CCDS51546.1 5 361.0 0.0 5.976 1.0 211.2 1.0 1,-2 0.5894 14 8.0 ALTERNATIVE:2 ENSMUSG00000034842 Art3 ENSMUST00000154245 ENSMUSP00000119283 TRANSLATION protein_coding stop - 1 178.0 0.0 3.0 0.0 144.8 0.0 1,-2 0.0013 7 -2.0 MINOR ENSMUSG00000034842 Art3 ENSMUST00000126281 ENSMUSP00000116110 TRANSLATION protein_coding start - 3 310.0 0.0 4.976 0.0 169.7 1.0 -4,-5 0.0026 12 -2.0 MINOR ENSMUSG00000034842 Art3 ENSMUST00000128246 ENSMUSP00000121620 TRANSLATION protein_coding stop - 1 206.0 0.0 4.0 0.0 169.2 0.0 1,-2 0.0016 8 -2.0 MINOR ENSMUSG00000034842 Art3 ENSMUST00000124509 ENSMUSP00000119113 TRANSLATION protein_coding stop - 2 192.0 0.0 3.5 0.0 160.4 0.0 1,-2 0.0013 8 -2.0 MINOR ENSMUSG00000034842 Art3 ENSMUST00000152041 ENSMUSP00000114826 TRANSLATION protein_coding start - 5 84.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000034842 Art3 ENSMUST00000118106 ENSMUSP00000114083 TRANSLATION protein_coding - - 1 375.0 0.0 5.976 0.0 211.2 0.0 1,-2 0.2306 10 8.0 ALTERNATIVE:2 ENSMUSG00000034842 Art3 ENSMUST00000125462 ENSMUSP00000117995 TRANSLATION protein_coding stop - 1 244.0 0.0 5.08 0.0 206.0 0.0 1,-2 0.0241 9 -2.0 MINOR ENSMUSG00000034842 Art3 ENSMUST00000119587 ENSMUSP00000112648 TRANSLATION protein_coding - CCDS84904.1 1 350.0 0.0 5.91 0.0 211.2 1.0 1,-2 0.3142 11 7.868 MINOR ENSMUSG00000034842 Art3 ENSMUST00000135528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034842 Art3 ENSMUST00000129222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034842 Art3 ENSMUST00000120193 ENSMUSP00000113074 TRANSLATION protein_coding - - 1 365.0 0.0 5.976 0.0 211.2 0.0 1,-2 0.1731 10 8.0 ALTERNATIVE:2 ENSMUSG00000038135 Crygn ENSMUST00000047119 ENSMUSP00000035860 TRANSLATION protein_coding - CCDS19129.1 1 183.0 3.0 3.165 25.8 215.9 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000038135 Crygn ENSMUST00000123386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000100704 Gm28434 ENSMUST00000187738 ENSMUSP00000139916 TRANSLATION protein_coding,RT - - 5 46.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.6281 - -2.0 PRINCIPAL:1 ENSMUSG00000095954 Pramel56 ENSMUST00000201703 ENSMUSP00000144382 TRANSLATION protein_coding - - 1 481.0 0.0 2.2 0.4 0.0 0.0 -4,-7 0.6587 - 6.0 PRINCIPAL:1 ENSMUSG00000095954 Pramel56 ENSMUST00000202911 ENSMUSP00000144236 TRANSLATION protein_coding - - 1 189.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.021 - 2.184 MINOR ENSMUSG00000037653 Kctd8 ENSMUST00000087231 ENSMUSP00000084484 TRANSLATION protein_coding - - 1 346.0 2.0 0.5 0.0 58.8 0.0 -4,-5 0.049 5 14.0 MINOR ENSMUSG00000037653 Kctd8 ENSMUST00000054095 ENSMUSP00000055326 TRANSLATION protein_coding - CCDS19320.1 1 476.0 2.0 0.5 6.2 58.8 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000058488 Kl ENSMUST00000078856 ENSMUSP00000077899 TRANSLATION protein_coding - CCDS19889.1 1 1014.0 13.0 4.3 0.7 689.2 0.0 3,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000058488 Kl ENSMUST00000202096 - NO_TRANSLATION retained_intron ENSMUSG00000070780 Rbm47 ENSMUST00000094756 ENSMUSP00000092348 TRANSLATION protein_coding - CCDS71598.1 1 521.0 0.0 2.0 5.4 127.0 0.0 -4,-5 0.5684 9 13.456 MINOR ENSMUSG00000070780 Rbm47 ENSMUST00000201311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070780 Rbm47 ENSMUST00000200775 ENSMUSP00000144325 TRANSLATION protein_coding - CCDS19313.1 1 590.0 0.0 2.0 13.1 127.0 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000070780 Rbm47 ENSMUST00000094757 ENSMUSP00000092349 TRANSLATION protein_coding - CCDS19313.1 1 590.0 0.0 2.0 13.1 127.0 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000070780 Rbm47 ENSMUST00000113724 ENSMUSP00000109353 TRANSLATION protein_coding - CCDS19313.1 5 590.0 0.0 2.0 13.1 127.0 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000070780 Rbm47 ENSMUST00000201605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070780 Rbm47 ENSMUST00000202700 ENSMUSP00000144287 TRANSLATION protein_coding stop - 5 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070780 Rbm47 ENSMUST00000167950 ENSMUSP00000128016 TRANSLATION protein_coding - CCDS19313.1 1 590.0 0.0 2.0 13.1 127.0 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000070780 Rbm47 ENSMUST00000201544 ENSMUSP00000144122 TRANSLATION protein_coding - CCDS19313.1 5 590.0 0.0 2.0 13.1 127.0 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000070780 Rbm47 ENSMUST00000200852 ENSMUSP00000144505 TRANSLATION protein_coding stop - 5 158.0 0.0 1.0 0.0 56.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000070780 Rbm47 ENSMUST00000113726 ENSMUSP00000109355 TRANSLATION protein_coding - CCDS19313.1 1 590.0 0.0 2.0 13.1 127.0 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000070780 Rbm47 ENSMUST00000201670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070780 Rbm47 ENSMUST00000201561 ENSMUSP00000144112 TRANSLATION protein_coding stop - 2 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0197 - -2.0 MINOR ENSMUSG00000070780 Rbm47 ENSMUST00000202794 - NO_TRANSLATION retained_intron ENSMUSG00000037235 Mxd4 ENSMUST00000119171 ENSMUSP00000113300 TRANSLATION protein_coding - - 1 199.0 0.0 1.6 1.1 24.2 0.0 -4,-7 0.0421 1 8.718 MINOR ENSMUSG00000037235 Mxd4 ENSMUST00000201763 - NO_TRANSLATION retained_intron ENSMUSG00000037235 Mxd4 ENSMUST00000201189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037235 Mxd4 ENSMUST00000042701 ENSMUSP00000039071 TRANSLATION protein_coding - CCDS19212.1 1 209.0 0.0 1.93 10.7 39.1 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000029602 Rasal1 ENSMUST00000125804 ENSMUSP00000119913 TRANSLATION protein_coding stop - 2 73.0 2.0 1.72 0.0 55.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029602 Rasal1 ENSMUST00000148695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029602 Rasal1 ENSMUST00000031606 ENSMUSP00000031606 TRANSLATION protein_coding - CCDS19623.1 1 799.0 21.0 8.825 0.1 383.0 0.0 -4,-7 1.0 25 18.0 PRINCIPAL:1 ENSMUSG00000029602 Rasal1 ENSMUST00000156722 ENSMUSP00000123266 TRANSLATION protein_coding - CCDS19623.1 1 799.0 21.0 8.825 0.1 383.0 0.0 -4,-7 1.0 25 18.0 PRINCIPAL:1 ENSMUSG00000029602 Rasal1 ENSMUST00000154759 - NO_TRANSLATION retained_intron ENSMUSG00000042589 Cux2 ENSMUST00000134326 ENSMUSP00000120095 TRANSLATION protein_coding stop - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000042589 Cux2 ENSMUST00000155396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042589 Cux2 ENSMUST00000156942 - NO_TRANSLATION retained_intron ENSMUSG00000042589 Cux2 ENSMUST00000086317 ENSMUSP00000083497 TRANSLATION protein_coding - CCDS39251.1 1 1426.0 0.0 3.6 0.1 300.8 0.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000042589 Cux2 ENSMUST00000197179 - NO_TRANSLATION retained_intron ENSMUSG00000042589 Cux2 ENSMUST00000168288 ENSMUSP00000130302 TRANSLATION protein_coding - CCDS39251.1 5 1426.0 0.0 3.6 0.1 300.8 0.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000042589 Cux2 ENSMUST00000144069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042589 Cux2 ENSMUST00000125267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042589 Cux2 ENSMUST00000111752 ENSMUSP00000107381 TRANSLATION protein_coding - CCDS39251.1 1 1426.0 0.0 3.6 0.1 300.8 0.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000042589 Cux2 ENSMUST00000133760 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042589 Cux2 ENSMUST00000154139 ENSMUSP00000114948 TRANSLATION protein_coding stop - 5 147.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029625 Cpsf4 ENSMUST00000160629 ENSMUSP00000124899 TRANSLATION protein_coding - CCDS71711.1 1 243.0 23.0 4.875 14.7 90.9 0.0 -4,-5 0.9873 10 20.48 MINOR ENSMUSG00000029625 Cpsf4 ENSMUST00000160762 ENSMUSP00000125640 TRANSLATION protein_coding start - 5 208.0 19.0 3.875 0.0 63.2 0.0 -4,-5 0.0016 7 -2.0 MINOR ENSMUSG00000029625 Cpsf4 ENSMUST00000160574 ENSMUSP00000137910 TRANSLATION nonsense_mediated_decay - - 5 62.0 3.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029625 Cpsf4 ENSMUST00000160437 - NO_TRANSLATION retained_intron ENSMUSG00000029625 Cpsf4 ENSMUST00000162244 ENSMUSP00000124966 TRANSLATION protein_coding - CCDS71710.1 1 244.0 23.0 4.875 14.7 90.7 0.0 -4,-5 0.9808 9 20.468 MINOR ENSMUSG00000029625 Cpsf4 ENSMUST00000160422 ENSMUSP00000125019 TRANSLATION protein_coding - - 5 269.0 23.0 4.875 23.1 90.9 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000029625 Cpsf4 ENSMUST00000070487 ENSMUSP00000069243 TRANSLATION protein_coding - CCDS19859.1 1 211.0 19.0 3.875 0.0 82.3 0.0 -4,-5 0.0133 8 12.768 MINOR ENSMUSG00000070697 Utp3 ENSMUST00000090413 ENSMUSP00000087896 TRANSLATION protein_coding - CCDS19402.1 - 469.0 0.0 0.0 4.2 160.7 0.0 -4,-1 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000029272 Sult1e1 ENSMUST00000031201 ENSMUSP00000031201 TRANSLATION protein_coding - CCDS19392.1 1 295.0 19.0 7.0 7.6 300.4 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000043635 Adamts3 ENSMUST00000196507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043635 Adamts3 ENSMUST00000198151 ENSMUSP00000142771 TRANSLATION protein_coding - - 1 228.0 0.0 0.0 0.0 95.0 0.0 0,-3 0.0 - 0.0 MINOR ENSMUSG00000043635 Adamts3 ENSMUST00000061427 ENSMUSP00000058552 TRANSLATION protein_coding - CCDS39140.1 1 1203.0 11.0 7.17 7.6 395.5 0.0 0,-3 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000043635 Adamts3 ENSMUST00000163159 ENSMUSP00000132219 TRANSLATION protein_coding - CCDS51542.1 1 1204.0 11.0 7.02 7.6 373.8 0.0 0,-3 0.8512 2 18.398 MINOR ENSMUSG00000029550 Sppl3 ENSMUST00000128678 - NO_TRANSLATION retained_intron ENSMUSG00000029550 Sppl3 ENSMUST00000201970 - NO_TRANSLATION retained_intron ENSMUSG00000029550 Sppl3 ENSMUST00000031530 ENSMUSP00000031530 TRANSLATION protein_coding - CCDS19578.1 1 384.0 0.0 -0.427 26.2 314.7 10.0 -4,-7 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000029550 Sppl3 ENSMUST00000128590 ENSMUSP00000143889 TRANSLATION nonsense_mediated_decay - - 3 38.0 0.0 0.3 0.0 0.0 2.0 -4,-7 0.0402 - -2.0 MINOR ENSMUSG00000029550 Sppl3 ENSMUST00000150708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044197 Gpr146 ENSMUST00000053120 ENSMUSP00000050973 TRANSLATION protein_coding - - - 139.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000044197 Gpr146 ENSMUST00000188655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044197 Gpr146 ENSMUST00000100514 ENSMUSP00000098083 TRANSLATION protein_coding - CCDS19809.1 1 333.0 0.0 0.52 30.0 46.1 7.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000044197 Gpr146 ENSMUST00000051293 ENSMUSP00000049707 TRANSLATION protein_coding - CCDS19809.1 1 333.0 0.0 0.52 30.0 46.1 7.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000044197 Gpr146 ENSMUST00000137254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044197 Gpr146 ENSMUST00000138631 ENSMUSP00000119464 TRANSLATION protein_coding stop - 2 106.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000035540 Gc ENSMUST00000200534 ENSMUSP00000143624 TRANSLATION protein_coding start - 5 125.0 0.0 3.33 0.0 114.2 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000035540 Gc ENSMUST00000049209 ENSMUSP00000046636 TRANSLATION protein_coding - CCDS19407.1 1 476.0 12.0 10.71 6.3 401.3 0.0 4,-1 1.0 23 20.0 PRINCIPAL:1 ENSMUSG00000029201 Ugdh ENSMUST00000031103 ENSMUSP00000031103 TRANSLATION protein_coding - CCDS19308.1 1 493.0 39.0 10.6 35.0 325.3 0.0 -4,-5 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000029201 Ugdh ENSMUST00000131263 ENSMUSP00000118999 TRANSLATION protein_coding stop - 5 156.0 22.0 3.0 0.0 157.3 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000029201 Ugdh ENSMUST00000139402 - NO_TRANSLATION retained_intron ENSMUSG00000029201 Ugdh ENSMUST00000125375 - NO_TRANSLATION retained_intron ENSMUSG00000005378 Bud23 ENSMUST00000144891 - NO_TRANSLATION retained_intron ENSMUSG00000005378 Bud23 ENSMUST00000148549 ENSMUSP00000118370 TRANSLATION protein_coding stop - 5 92.0 15.0 2.1 0.0 39.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005378 Bud23 ENSMUST00000201554 ENSMUSP00000144677 TRANSLATION protein_coding stop - 5 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005378 Bud23 ENSMUST00000202478 ENSMUSP00000144612 TRANSLATION nonsense_mediated_decay start - 3 81.0 0.0 1.48 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005378 Bud23 ENSMUST00000111205 ENSMUSP00000106836 TRANSLATION protein_coding - - 3 246.0 19.0 4.83 0.0 100.5 0.0 -4,-7 0.0016 3 16.152 MINOR ENSMUSG00000005378 Bud23 ENSMUST00000134180 - NO_TRANSLATION retained_intron ENSMUSG00000005378 Bud23 ENSMUST00000071677 ENSMUSP00000071600 TRANSLATION protein_coding - - 1 259.0 19.0 4.65 0.0 113.0 0.0 -4,-6 0.0205 4 16.542 MINOR ENSMUSG00000005378 Bud23 ENSMUST00000129013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005378 Bud23 ENSMUST00000141765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005378 Bud23 ENSMUST00000149108 - NO_TRANSLATION retained_intron ENSMUSG00000005378 Bud23 ENSMUST00000085984 ENSMUSP00000083146 TRANSLATION protein_coding - CCDS19732.2 1 281.0 19.0 5.38 24.7 113.0 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000005378 Bud23 ENSMUST00000141309 ENSMUSP00000119659 TRANSLATION protein_coding stop - 5 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005378 Bud23 ENSMUST00000151551 - NO_TRANSLATION retained_intron ENSMUSG00000005378 Bud23 ENSMUST00000147756 - NO_TRANSLATION retained_intron ENSMUSG00000005378 Bud23 ENSMUST00000129691 ENSMUSP00000120383 TRANSLATION protein_coding start - 5 139.0 0.0 1.3 0.0 54.0 0.0 -4,-6 0.0001 3 -2.0 MINOR ENSMUSG00000032840 Spring1 ENSMUST00000049138 ENSMUSP00000043410 TRANSLATION protein_coding - CCDS39237.1 1 205.0 0.0 0.0 20.6 152.3 0.0 -1,-7 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000039747 Orai2 ENSMUST00000041048 ENSMUSP00000037137 TRANSLATION protein_coding - CCDS39326.1 1 250.0 0.0 0.548 17.3 238.6 4.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039747 Orai2 ENSMUST00000197052 ENSMUSP00000143219 TRANSLATION protein_coding stop - 3 158.0 0.0 0.35 0.0 165.3 2.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000039747 Orai2 ENSMUST00000196454 ENSMUSP00000142597 TRANSLATION protein_coding - - 5 264.0 0.0 0.548 0.0 238.6 4.0 -4,-6 0.0849 - 12.0 MINOR ENSMUSG00000039747 Orai2 ENSMUST00000198268 - NO_TRANSLATION retained_intron ENSMUSG00000048764 Tmprss11f ENSMUST00000173259 - NO_TRANSLATION retained_intron ENSMUSG00000048764 Tmprss11f ENSMUST00000116553 ENSMUSP00000112252 TRANSLATION protein_coding - CCDS39125.1 1 439.0 5.0 3.416 9.4 302.1 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000048764 Tmprss11f ENSMUST00000161625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025534 Gusb ENSMUST00000111308 ENSMUSP00000106940 TRANSLATION protein_coding - - 1 250.0 0.0 4.5 0.0 0.0 0.0 3,-1 0.0023 6 0.0 MINOR ENSMUSG00000025534 Gusb ENSMUST00000026613 ENSMUSP00000026613 TRANSLATION protein_coding - CCDS19705.1 1 648.0 6.0 12.25 3.2 416.9 0.0 3,-1 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000025534 Gusb ENSMUST00000122994 - NO_TRANSLATION retained_intron ENSMUSG00000025534 Gusb ENSMUST00000126676 - NO_TRANSLATION retained_intron ENSMUSG00000025534 Gusb ENSMUST00000201801 ENSMUSP00000144478 TRANSLATION nonsense_mediated_decay - - 1 144.0 0.0 2.3 0.0 0.0 0.0 3,-1 0.0008 3 -2.0 MINOR ENSMUSG00000025534 Gusb ENSMUST00000111307 ENSMUSP00000106939 TRANSLATION protein_coding - - 1 144.0 0.0 2.3 0.0 0.0 0.0 3,-1 0.0008 3 0.0 MINOR ENSMUSG00000093445 Lrch4 ENSMUST00000177477 ENSMUSP00000135724 TRANSLATION nonsense_mediated_decay - - 3 99.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000093445 Lrch4 ENSMUST00000176011 ENSMUSP00000135133 TRANSLATION nonsense_mediated_decay - - 3 139.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000093445 Lrch4 ENSMUST00000176871 ENSMUSP00000135638 TRANSLATION protein_coding start/stop - 1 79.0 0.0 0.099 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000093445 Lrch4 ENSMUST00000176667 ENSMUSP00000135832 TRANSLATION protein_coding - CCDS57392.1 1 649.0 0.0 6.381 0.3 120.2 0.0 -4,-5 0.1796 19 7.408 MINOR ENSMUSG00000093445 Lrch4 ENSMUST00000176988 - NO_TRANSLATION retained_intron ENSMUSG00000093445 Lrch4 ENSMUST00000176768 ENSMUSP00000135242 TRANSLATION protein_coding start - 3 145.0 0.0 0.93 0.0 43.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000093445 Lrch4 ENSMUST00000031734 ENSMUSP00000031734 TRANSLATION protein_coding - CCDS19772.1 1 680.0 0.0 6.449 1.3 124.5 1.0 -4,-5 1.0 19 8.88 PRINCIPAL:2 ENSMUSG00000093445 Lrch4 ENSMUST00000175968 ENSMUSP00000134767 TRANSLATION protein_coding - - 5 626.0 0.0 6.509 0.1 124.5 1.0 -4,-7 0.0803 17 8.0 ALTERNATIVE:2 ENSMUSG00000032867 Fbxw8 ENSMUST00000049474 ENSMUSP00000047012 TRANSLATION protein_coding - CCDS19609.1 1 598.0 0.0 2.975 5.3 43.7 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000032867 Fbxw8 ENSMUST00000201545 - NO_TRANSLATION retained_intron ENSMUSG00000029089 5730480H06Rik ENSMUST00000195960 ENSMUSP00000142685 TRANSLATION nonsense_mediated_decay start - 2 59.0 0.0 0.75 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000029089 5730480H06Rik ENSMUST00000199818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029089 5730480H06Rik ENSMUST00000197072 - NO_TRANSLATION retained_intron ENSMUSG00000029089 5730480H06Rik ENSMUST00000030968 ENSMUSP00000030968 TRANSLATION protein_coding - CCDS19281.1 1 248.0 0.0 5.0 14.5 171.3 0.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000029089 5730480H06Rik ENSMUST00000197915 - NO_TRANSLATION retained_intron ENSMUSG00000029089 5730480H06Rik ENSMUST00000200566 ENSMUSP00000142613 TRANSLATION nonsense_mediated_decay - - 5 93.0 0.0 0.75 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000029089 5730480H06Rik ENSMUST00000196950 ENSMUSP00000143072 TRANSLATION protein_coding - CCDS19281.1 1 248.0 0.0 5.0 14.5 171.3 0.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000029089 5730480H06Rik ENSMUST00000176521 - NO_TRANSLATION retained_intron ENSMUSG00000029089 5730480H06Rik ENSMUST00000196604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018604 Tbx3 ENSMUST00000079719 ENSMUSP00000078657 TRANSLATION protein_coding - CCDS19614.1 1 721.0 2.0 3.15 6.4 339.0 0.0 -4,-7 1.0 8 12.0 PRINCIPAL:4 ENSMUSG00000018604 Tbx3 ENSMUST00000154680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018604 Tbx3 ENSMUST00000202034 - NO_TRANSLATION retained_intron ENSMUSG00000018604 Tbx3 ENSMUST00000018748 ENSMUSP00000018748 TRANSLATION protein_coding - CCDS19613.1 1 741.0 2.0 3.15 6.4 330.8 0.0 -4,-7 0.7876 8 11.0 ALTERNATIVE:1 ENSMUSG00000018604 Tbx3 ENSMUST00000145647 - NO_TRANSLATION retained_intron ENSMUSG00000018604 Tbx3 ENSMUST00000121021 ENSMUSP00000112519 TRANSLATION protein_coding - CCDS19614.1 1 721.0 2.0 3.15 6.4 339.0 0.0 -4,-7 1.0 8 12.0 PRINCIPAL:4 ENSMUSG00000019494 Cops6 ENSMUST00000127881 - NO_TRANSLATION retained_intron ENSMUSG00000019494 Cops6 ENSMUST00000132639 ENSMUSP00000121554 TRANSLATION protein_coding start - 5 122.0 0.0 3.0 0.0 77.7 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000019494 Cops6 ENSMUST00000154867 - NO_TRANSLATION retained_intron ENSMUSG00000019494 Cops6 ENSMUST00000110951 ENSMUSP00000106576 TRANSLATION protein_coding - - 1 297.0 0.0 8.0 9.4 193.4 0.0 -4,-6 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000019494 Cops6 ENSMUST00000019638 ENSMUSP00000019638 TRANSLATION protein_coding - CCDS19792.1 1 324.0 0.0 8.0 3.7 193.4 0.0 -4,-6 0.4529 10 12.963 MINOR ENSMUSG00000029513 Prkab1 ENSMUST00000133098 ENSMUSP00000138749 TRANSLATION nonsense_mediated_decay - - 3 176.0 0.0 2.0 0.0 93.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000029513 Prkab1 ENSMUST00000111999 ENSMUSP00000107630 TRANSLATION protein_coding - CCDS19598.1 2 270.0 0.0 5.83 33.9 212.7 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029513 Prkab1 ENSMUST00000143524 - NO_TRANSLATION retained_intron ENSMUSG00000029513 Prkab1 ENSMUST00000152174 - NO_TRANSLATION retained_intron ENSMUSG00000029513 Prkab1 ENSMUST00000141018 - NO_TRANSLATION retained_intron ENSMUSG00000029513 Prkab1 ENSMUST00000147343 - NO_TRANSLATION retained_intron ENSMUSG00000029513 Prkab1 ENSMUST00000143146 - NO_TRANSLATION retained_intron ENSMUSG00000029513 Prkab1 ENSMUST00000031486 ENSMUSP00000031486 TRANSLATION protein_coding - CCDS19598.1 1 270.0 0.0 5.83 33.9 212.7 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029513 Prkab1 ENSMUST00000148208 ENSMUSP00000138221 TRANSLATION nonsense_mediated_decay - - 5 176.0 0.0 2.0 0.0 93.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000095074 Pramel42 ENSMUST00000202642 ENSMUSP00000144005 TRANSLATION protein_coding - CCDS57361.1 1 481.0 0.0 2.2 0.4 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095074 Pramel42 ENSMUST00000201138 ENSMUSP00000144523 TRANSLATION protein_coding - - 1 189.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0203 - 2.184 MINOR ENSMUSG00000029088 Kcnip4 ENSMUST00000176191 ENSMUSP00000135071 TRANSLATION protein_coding - CCDS57341.1 5 216.0 17.0 5.9 13.1 92.5 0.0 -4,-5 0.4894 2 15.18 MINOR ENSMUSG00000029088 Kcnip4 ENSMUST00000166924 ENSMUSP00000131276 TRANSLATION protein_coding - CCDS57339.1 1 233.0 17.0 6.05 29.2 92.5 1.0 -4,-7 0.9804 2 17.532 ALTERNATIVE:1 ENSMUSG00000029088 Kcnip4 ENSMUST00000087395 ENSMUSP00000084656 TRANSLATION protein_coding - CCDS57342.1 5 250.0 17.0 5.9 14.3 92.5 0.0 -4,-6 0.6771 3 15.336 MINOR ENSMUSG00000029088 Kcnip4 ENSMUST00000175660 ENSMUSP00000135799 TRANSLATION protein_coding - CCDS57340.1 1 225.0 17.0 5.75 32.4 92.5 0.0 -4,-7 0.9656 2 17.34 ALTERNATIVE:1 ENSMUSG00000029088 Kcnip4 ENSMUST00000101215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029088 Kcnip4 ENSMUST00000176978 ENSMUSP00000134758 TRANSLATION protein_coding - CCDS39084.1 1 229.0 17.0 6.08 31.2 92.5 1.0 -2,-5 1.0 2 17.848 PRINCIPAL:4 ENSMUSG00000029088 Kcnip4 ENSMUST00000101214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029088 Kcnip4 ENSMUST00000172363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029499 Pxmp2 ENSMUST00000126882 - NO_TRANSLATION retained_intron ENSMUSG00000029499 Pxmp2 ENSMUST00000141550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029499 Pxmp2 ENSMUST00000031472 ENSMUSP00000031472 TRANSLATION protein_coding - CCDS19524.1 1 193.0 0.0 4.43 11.8 74.8 0.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000029499 Pxmp2 ENSMUST00000155266 ENSMUSP00000117729 TRANSLATION nonsense_mediated_decay - - 5 87.0 0.0 1.6 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000120166 Zfp33b ENSMUST00000241714 ENSMUSP00000159606 TRANSLATION protein_coding - - - 473.0 7.0 3.0 0.0 73.4 0.0 -4,-5 0.0512 - 6.0 MINOR ENSMUSG00000120166 Zfp33b ENSMUST00000242469 ENSMUSP00000159605 TRANSLATION protein_coding - - - 443.0 45.0 2.65 0.0 238.9 0.0 -4,-5 0.7109 - 17.298 PRINCIPAL:1 ENSMUSG00000120166 Zfp33b ENSMUST00000247219 ENSMUSP00000159607 TRANSLATION protein_coding - - - 402.0 45.0 1.65 0.0 166.3 0.0 -4,-5 0.0571 - 10.944 MINOR ENSMUSG00000033434 Gtpbp6 ENSMUST00000138507 - NO_TRANSLATION retained_intron ENSMUSG00000033434 Gtpbp6 ENSMUST00000136722 - NO_TRANSLATION retained_intron ENSMUSG00000033434 Gtpbp6 ENSMUST00000144162 - NO_TRANSLATION retained_intron ENSMUSG00000033434 Gtpbp6 ENSMUST00000135409 ENSMUSP00000117817 TRANSLATION protein_coding stop - 2 221.0 1.0 2.042 0.0 99.3 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000033434 Gtpbp6 ENSMUST00000127628 - NO_TRANSLATION retained_intron ENSMUSG00000033434 Gtpbp6 ENSMUST00000131774 - NO_TRANSLATION retained_intron ENSMUSG00000033434 Gtpbp6 ENSMUST00000131918 - NO_TRANSLATION retained_intron ENSMUSG00000033434 Gtpbp6 ENSMUST00000140538 ENSMUSP00000115028 TRANSLATION protein_coding stop - 5 17.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033434 Gtpbp6 ENSMUST00000199496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033434 Gtpbp6 ENSMUST00000077220 ENSMUSP00000076458 TRANSLATION protein_coding - CCDS51604.1 1 514.0 15.0 3.204 0.1 148.4 0.0 -3,1 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000033434 Gtpbp6 ENSMUST00000149227 - NO_TRANSLATION retained_intron ENSMUSG00000033434 Gtpbp6 ENSMUST00000138881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029191 Rfc1 ENSMUST00000204965 ENSMUSP00000144980 TRANSLATION protein_coding - CCDS39096.1 1 1131.0 15.0 11.71 0.0 315.2 0.0 -4,-5 0.6374 18 13.802 ALTERNATIVE:2 ENSMUSG00000029191 Rfc1 ENSMUST00000203644 - NO_TRANSLATION retained_intron ENSMUSG00000029191 Rfc1 ENSMUST00000172732 ENSMUSP00000134444 TRANSLATION protein_coding - CCDS84884.1 1 1130.0 15.0 11.81 0.0 315.2 0.0 -4,-5 0.6463 18 14.0 ALTERNATIVE:2 ENSMUSG00000029191 Rfc1 ENSMUST00000203581 ENSMUSP00000145385 TRANSLATION protein_coding - - 1 1145.0 15.0 11.81 0.0 315.2 0.0 -4,-5 0.9525 18 14.0 PRINCIPAL:2 ENSMUSG00000029191 Rfc1 ENSMUST00000203596 ENSMUSP00000145181 TRANSLATION protein_coding start/stop - 2 212.0 0.0 2.198 0.0 158.8 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000029191 Rfc1 ENSMUST00000205063 - NO_TRANSLATION retained_intron ENSMUSG00000029191 Rfc1 ENSMUST00000203471 ENSMUSP00000144954 TRANSLATION protein_coding - CCDS84885.1 1 1132.0 15.0 11.71 0.0 315.2 0.0 -4,-5 0.6504 18 13.802 ALTERNATIVE:2 ENSMUSG00000028954 Nub1 ENSMUST00000197407 ENSMUSP00000143657 TRANSLATION protein_coding - CCDS80230.1 1 638.0 0.0 4.55 3.3 86.5 0.0 -4,0 0.5488 8 12.84 MINOR ENSMUSG00000028954 Nub1 ENSMUST00000200337 - NO_TRANSLATION retained_intron ENSMUSG00000028954 Nub1 ENSMUST00000068825 ENSMUSP00000070265 TRANSLATION protein_coding - CCDS39030.1 1 614.0 0.0 4.55 9.2 86.5 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000029153 Ociad2 ENSMUST00000200830 ENSMUSP00000144072 TRANSLATION protein_coding - - 3 92.0 0.0 1.13 4.2 69.6 0.0 -4,-7 0.1441 4 9.858 MINOR ENSMUSG00000029153 Ociad2 ENSMUST00000087195 ENSMUSP00000084445 TRANSLATION protein_coding - CCDS19340.1 1 154.0 0.0 1.13 10.7 121.8 0.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000029153 Ociad2 ENSMUST00000200776 ENSMUSP00000143984 TRANSLATION protein_coding - - 3 41.0 0.0 0.63 0.0 33.0 0.0 -4,-7 0.0 - 4.02 MINOR ENSMUSG00000029153 Ociad2 ENSMUST00000200821 ENSMUSP00000144201 TRANSLATION protein_coding stop - 3 87.0 0.0 0.33 0.0 80.2 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029153 Ociad2 ENSMUST00000201908 ENSMUSP00000144012 TRANSLATION protein_coding - CCDS80301.1 2 103.0 0.0 0.63 1.0 83.9 0.0 -4,-7 0.0191 2 7.074 MINOR ENSMUSG00000029153 Ociad2 ENSMUST00000202012 ENSMUSP00000144293 TRANSLATION protein_coding - - 5 92.0 0.0 1.13 4.2 69.6 0.0 -4,-7 0.1441 4 9.858 MINOR ENSMUSG00000029490 Slc49a3 ENSMUST00000238429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029490 Slc49a3 ENSMUST00000031455 ENSMUSP00000031455 TRANSLATION protein_coding - CCDS19511.1 1 516.0 0.0 0.0 0.4 76.2 11.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000029490 Slc49a3 ENSMUST00000238630 - NO_TRANSLATION retained_intron ENSMUSG00000029490 Slc49a3 ENSMUST00000238510 ENSMUSP00000158690 TRANSLATION nonsense_mediated_decay - - - 64.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029123 Stk32b ENSMUST00000094836 ENSMUSP00000092432 TRANSLATION protein_coding - CCDS39076.1 1 414.0 6.0 7.55 11.0 219.8 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000049241 Hcar1 ENSMUST00000164267 ENSMUSP00000129280 TRANSLATION protein_coding - - - 343.0 0.0 1.0 8.4 116.2 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000029173 Sepsecs ENSMUST00000126574 ENSMUSP00000114413 TRANSLATION nonsense_mediated_decay start - 5 130.0 7.0 2.0 0.0 159.1 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000029173 Sepsecs ENSMUST00000199425 - NO_TRANSLATION retained_intron ENSMUSG00000029173 Sepsecs ENSMUST00000123856 ENSMUSP00000114760 TRANSLATION nonsense_mediated_decay start - 5 67.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029173 Sepsecs ENSMUST00000150709 ENSMUSP00000115477 TRANSLATION nonsense_mediated_decay - - 1 91.0 0.0 2.25 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029173 Sepsecs ENSMUST00000031069 ENSMUSP00000031069 TRANSLATION protein_coding - CCDS19286.1 1 504.0 14.0 12.58 4.7 596.4 0.0 -4,-7 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000067700 Gm5862 ENSMUST00000072286 ENSMUSP00000072133 TRANSLATION protein_coding - CCDS59672.1 5 267.0 0.0 2.25 0.0 82.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029598 Plbd2 ENSMUST00000131831 - NO_TRANSLATION retained_intron ENSMUSG00000029598 Plbd2 ENSMUST00000151361 - NO_TRANSLATION retained_intron ENSMUSG00000029598 Plbd2 ENSMUST00000031597 ENSMUSP00000031597 TRANSLATION protein_coding - CCDS19620.1 1 594.0 0.0 11.55 4.1 580.1 0.0 -1,-4 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000033773 Rpap2 ENSMUST00000129483 ENSMUSP00000142510 TRANSLATION protein_coding stop - 3 82.0 3.0 2.2 0.0 87.6 0.0 -4,-5 0.002 2 -2.0 MINOR ENSMUSG00000033773 Rpap2 ENSMUST00000112654 ENSMUSP00000108273 TRANSLATION protein_coding - CCDS51588.1 1 568.0 3.0 3.2 0.0 81.9 0.0 -4,-7 0.1747 8 14.61 MINOR ENSMUSG00000033773 Rpap2 ENSMUST00000147284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033773 Rpap2 ENSMUST00000112650 ENSMUSP00000108269 TRANSLATION protein_coding - CCDS51589.1 1 489.0 3.0 2.6 0.0 81.9 0.0 -4,-5 0.0423 7 13.41 MINOR ENSMUSG00000033773 Rpap2 ENSMUST00000112651 ENSMUSP00000108270 TRANSLATION protein_coding - CCDS71631.1 1 537.0 3.0 2.6 0.3 81.9 0.0 -4,-5 0.0801 7 13.41 MINOR ENSMUSG00000033773 Rpap2 ENSMUST00000150074 ENSMUSP00000121306 TRANSLATION protein_coding stop - 3 53.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000033773 Rpap2 ENSMUST00000112655 ENSMUSP00000108274 TRANSLATION protein_coding - CCDS71630.1 1 570.0 3.0 3.2 0.0 81.9 0.0 -4,-7 0.1746 8 14.61 MINOR ENSMUSG00000033773 Rpap2 ENSMUST00000065422 ENSMUSP00000070209 TRANSLATION protein_coding - CCDS19506.1 1 614.0 3.0 3.2 5.6 81.9 0.0 -4,-7 1.0 8 16.61 PRINCIPAL:1 ENSMUSG00000054434 Tmem120b ENSMUST00000160344 ENSMUSP00000124971 TRANSLATION protein_coding stop - 3 120.0 0.0 3.75 0.0 94.7 2.0 -4,-5 0.0022 3 -2.0 MINOR ENSMUSG00000054434 Tmem120b ENSMUST00000161049 - NO_TRANSLATION retained_intron ENSMUSG00000054434 Tmem120b ENSMUST00000161059 ENSMUSP00000124358 TRANSLATION nonsense_mediated_decay - - 5 109.0 0.0 2.75 0.0 89.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000054434 Tmem120b ENSMUST00000162104 - NO_TRANSLATION retained_intron ENSMUSG00000054434 Tmem120b ENSMUST00000111619 ENSMUSP00000107246 TRANSLATION protein_coding - - 1 300.0 0.0 9.25 0.0 407.5 6.0 -4,-5 0.0065 3 4.002 MINOR ENSMUSG00000054434 Tmem120b ENSMUST00000161660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054434 Tmem120b ENSMUST00000160489 - NO_TRANSLATION retained_intron ENSMUSG00000054434 Tmem120b ENSMUST00000067505 ENSMUSP00000068551 TRANSLATION protein_coding - CCDS39262.1 1 339.0 0.0 10.25 15.0 516.9 6.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000044576 Garem2 ENSMUST00000058045 ENSMUSP00000054208 TRANSLATION protein_coding - CCDS51449.1 5 880.0 0.0 0.2 0.4 263.7 0.0 -2,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000023078 Cxcl13 ENSMUST00000023840 ENSMUSP00000023840 TRANSLATION protein_coding - CCDS19447.1 1 109.0 0.0 2.25 0.0 52.4 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000047963 Stbd1 ENSMUST00000202332 ENSMUSP00000144467 TRANSLATION nonsense_mediated_decay - - 1 79.0 0.0 0.0 0.0 0.0 1.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000047963 Stbd1 ENSMUST00000050952 ENSMUSP00000054322 TRANSLATION protein_coding - CCDS19433.1 1 338.0 4.0 0.6 0.1 67.1 1.0 0,-3 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000047963 Stbd1 ENSMUST00000200941 ENSMUSP00000144305 TRANSLATION protein_coding - - 1 79.0 0.0 0.0 0.0 0.0 1.0 0,-3 0.0 1 0.0 MINOR ENSMUSG00000029596 Sdsl ENSMUST00000031594 ENSMUSP00000031594 TRANSLATION protein_coding - CCDS19618.1 1 329.0 17.0 6.25 6.2 241.3 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000029596 Sdsl ENSMUST00000052258 ENSMUSP00000058198 TRANSLATION protein_coding - CCDS19618.1 1 329.0 17.0 6.25 6.2 241.3 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000029596 Sdsl ENSMUST00000132916 ENSMUSP00000120868 TRANSLATION protein_coding stop - 5 120.0 3.0 2.5 0.0 92.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000053388 Trim50 ENSMUST00000065785 ENSMUSP00000066662 TRANSLATION protein_coding - CCDS19739.1 1 483.0 16.0 2.55 4.8 175.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:4 ENSMUSG00000053388 Trim50 ENSMUST00000111180 ENSMUSP00000106811 TRANSLATION protein_coding - - 1 484.0 16.0 2.55 4.8 175.9 0.0 -4,-5 0.8603 2 16.0 ALTERNATIVE:1 ENSMUSG00000072762 4930522L14Rik ENSMUST00000100937 ENSMUSP00000098497 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 81.7 0.0 -4,-5 0.0 - 4.686 MINOR ENSMUSG00000072762 4930522L14Rik ENSMUST00000112547 ENSMUSP00000108166 TRANSLATION protein_coding - - 5 666.0 80.0 2.24 0.0 407.4 0.0 -4,-5 0.8171 1 18.0 PRINCIPAL:1 ENSMUSG00000028969 Cdk5 ENSMUST00000198990 ENSMUSP00000142413 TRANSLATION protein_coding - - 5 260.0 16.0 8.0 2.9 179.7 0.0 -4,-5 0.0523 8 9.996 MINOR ENSMUSG00000028969 Cdk5 ENSMUST00000030814 ENSMUSP00000030814 TRANSLATION protein_coding - CCDS51434.1 1 292.0 19.0 9.0 32.9 250.5 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000028969 Cdk5 ENSMUST00000197619 - NO_TRANSLATION retained_intron ENSMUSG00000096259 Pramel38 ENSMUST00000179743 ENSMUSP00000137294 TRANSLATION protein_coding - - 5 481.0 0.0 2.2 0.4 0.0 0.0 -4,-7 0.6587 - 6.0 PRINCIPAL:1 ENSMUSG00000062960 Kdr ENSMUST00000202473 - NO_TRANSLATION retained_intron ENSMUSG00000062960 Kdr ENSMUST00000113516 ENSMUSP00000109144 TRANSLATION protein_coding - CCDS39114.1 1 1345.0 19.0 18.047 1.1 508.0 0.0 4,-1 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000062960 Kdr ENSMUST00000149573 - NO_TRANSLATION retained_intron ENSMUSG00000039358 Drd5 ENSMUST00000041646 ENSMUSP00000039691 TRANSLATION protein_coding - CCDS19255.1 - 478.0 0.0 0.264 3.7 246.2 0.0 -4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000034324 Tmem132c ENSMUST00000145748 ENSMUSP00000121783 TRANSLATION protein_coding start - 3 148.0 0.0 0.0 0.0 98.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034324 Tmem132c ENSMUST00000128068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034324 Tmem132c ENSMUST00000119026 ENSMUSP00000113090 TRANSLATION protein_coding - CCDS51650.1 1 1107.0 0.0 0.0 0.4 774.2 0.0 -2,0 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000034324 Tmem132c ENSMUST00000134780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034324 Tmem132c ENSMUST00000132592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035325 Sec31a ENSMUST00000183247 ENSMUSP00000138129 TRANSLATION protein_coding start/stop - 3 248.0 0.0 0.67 0.0 0.0 0.0 -4,-7 0.0182 14 -2.0 MINOR ENSMUSG00000035325 Sec31a ENSMUST00000182569 - NO_TRANSLATION retained_intron ENSMUSG00000035325 Sec31a ENSMUST00000182886 ENSMUSP00000138213 TRANSLATION protein_coding - - 5 1191.0 0.0 3.7375 4.7 0.0 0.0 -4,-5 0.4897 38 6.342 MINOR ENSMUSG00000035325 Sec31a ENSMUST00000182664 - NO_TRANSLATION retained_intron ENSMUSG00000035325 Sec31a ENSMUST00000094578 ENSMUSP00000092157 TRANSLATION protein_coding - CCDS51573.1 5 1230.0 0.0 4.2125 9.6 0.0 0.0 -4,-5 1.0 42 9.0 PRINCIPAL:1 ENSMUSG00000035325 Sec31a ENSMUST00000182171 - NO_TRANSLATION retained_intron ENSMUSG00000035325 Sec31a ENSMUST00000182433 ENSMUSP00000138366 TRANSLATION protein_coding start - 1 264.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.02 8 -2.0 MINOR ENSMUSG00000035325 Sec31a ENSMUST00000182988 ENSMUSP00000138571 TRANSLATION protein_coding start - 5 934.0 0.0 1.4125 0.0 0.0 0.0 -4,-6 0.0431 33 -2.0 MINOR ENSMUSG00000035325 Sec31a ENSMUST00000182812 ENSMUSP00000138507 TRANSLATION protein_coding start/stop - 5 364.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0253 10 -2.0 MINOR ENSMUSG00000035325 Sec31a ENSMUST00000182850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035325 Sec31a ENSMUST00000182144 - NO_TRANSLATION retained_intron ENSMUSG00000035325 Sec31a ENSMUST00000182002 ENSMUSP00000138428 TRANSLATION protein_coding start/stop - 2 296.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0221 2 -2.0 MINOR ENSMUSG00000029607 Ankrd61 ENSMUST00000110718 ENSMUSP00000106346 TRANSLATION protein_coding - - 1 378.0 0.0 1.36 0.0 74.8 0.0 -4,-5 0.0446 - 12.0 MINOR ENSMUSG00000029607 Ankrd61 ENSMUST00000079624 ENSMUSP00000078571 TRANSLATION protein_coding - CCDS80460.1 1 379.0 0.0 1.27 0.0 74.8 0.0 -4,-7 0.1215 - 11.604 MINOR ENSMUSG00000029607 Ankrd61 ENSMUST00000110717 ENSMUSP00000106345 TRANSLATION protein_coding - CCDS39373.1 1 421.0 0.0 1.12 10.8 74.8 0.0 -4,-6 1.0 - 13.944 PRINCIPAL:1 ENSMUSG00000043614 Vps37d ENSMUST00000067935 ENSMUSP00000063762 TRANSLATION protein_coding - CCDS57388.1 1 261.0 0.0 2.95 0.4 110.5 0.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000043614 Vps37d ENSMUST00000076203 ENSMUSP00000075559 TRANSLATION protein_coding - CCDS19733.1 1 176.0 0.0 1.2 0.0 0.0 0.0 -4,-1 0.0184 - 2.442 MINOR ENSMUSG00000029410 Ppef2 ENSMUST00000201130 ENSMUSP00000144157 TRANSLATION protein_coding - CCDS39151.1 1 757.0 11.0 4.492 7.4 140.5 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000029410 Ppef2 ENSMUST00000031359 ENSMUSP00000031359 TRANSLATION protein_coding - CCDS39151.1 1 757.0 11.0 4.492 7.4 140.5 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000029410 Ppef2 ENSMUST00000201236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036980 Taf6 ENSMUST00000200483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036980 Taf6 ENSMUST00000139276 ENSMUSP00000116512 TRANSLATION protein_coding stop - 5 55.0 0.0 1.0 0.0 69.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036980 Taf6 ENSMUST00000123415 ENSMUSP00000122534 TRANSLATION protein_coding stop - 5 214.0 0.0 3.65 0.0 113.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000036980 Taf6 ENSMUST00000110936 ENSMUSP00000106561 TRANSLATION protein_coding - CCDS19795.1 1 678.0 0.0 10.05 8.1 219.4 0.0 -4,-5 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000036980 Taf6 ENSMUST00000153117 ENSMUSP00000138335 TRANSLATION nonsense_mediated_decay - - 5 114.0 0.0 2.55 0.0 113.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000036980 Taf6 ENSMUST00000048698 ENSMUSP00000048016 TRANSLATION protein_coding - CCDS19795.1 1 678.0 0.0 10.05 8.1 219.4 0.0 -4,-5 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000036980 Taf6 ENSMUST00000130473 - NO_TRANSLATION retained_intron ENSMUSG00000036980 Taf6 ENSMUST00000110937 ENSMUSP00000106562 TRANSLATION protein_coding - - 5 636.0 0.0 10.05 0.0 219.4 0.0 -4,-5 0.0263 19 12.0 MINOR ENSMUSG00000061461 Smim20 ENSMUST00000204218 ENSMUSP00000145521 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 1.0 0.0 55.2 1.0 0,1 0.0015 - -2.0 MINOR ENSMUSG00000061461 Smim20 ENSMUST00000204839 - NO_TRANSLATION retained_intron ENSMUSG00000061461 Smim20 ENSMUST00000203623 - NO_TRANSLATION retained_intron ENSMUSG00000061461 Smim20 ENSMUST00000147148 ENSMUSP00000121637 TRANSLATION protein_coding - CCDS51502.1 1 69.0 0.0 1.83 29.1 94.9 1.0 0,1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000061461 Smim20 ENSMUST00000204089 - NO_TRANSLATION retained_intron ENSMUSG00000061461 Smim20 ENSMUST00000204465 ENSMUSP00000144695 TRANSLATION nonsense_mediated_decay - - 1 46.0 0.0 1.0 0.0 55.2 1.0 0,1 0.0015 - -2.0 MINOR ENSMUSG00000007987 Ift22 ENSMUST00000200157 ENSMUSP00000143488 TRANSLATION protein_coding - CCDS19756.1 1 185.0 20.0 4.83 29.5 55.8 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000007987 Ift22 ENSMUST00000200153 ENSMUSP00000142389 TRANSLATION protein_coding - - 1 176.0 20.0 3.83 0.0 55.8 0.0 -4,-5 0.0189 4 16.002 MINOR ENSMUSG00000007987 Ift22 ENSMUST00000008131 ENSMUSP00000008131 TRANSLATION protein_coding start - 5 97.0 13.0 2.08 0.0 33.8 0.0 -4,-5 0.0008 2 -2.0 MINOR ENSMUSG00000007987 Ift22 ENSMUST00000200054 - NO_TRANSLATION retained_intron ENSMUSG00000007987 Ift22 ENSMUST00000199101 ENSMUSP00000143017 TRANSLATION protein_coding stop - 5 155.0 18.0 3.83 3.1 0.0 0.0 -4,-5 0.0271 5 -2.0 MINOR ENSMUSG00000041298 Katnal1 ENSMUST00000152360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041298 Katnal1 ENSMUST00000139269 - NO_TRANSLATION retained_intron ENSMUSG00000041298 Katnal1 ENSMUST00000110509 ENSMUSP00000106136 TRANSLATION protein_coding stop - 5 234.0 3.0 3.25 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000041298 Katnal1 ENSMUST00000147473 ENSMUSP00000120502 TRANSLATION protein_coding stop - 5 209.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000041298 Katnal1 ENSMUST00000149169 ENSMUSP00000120707 TRANSLATION protein_coding stop - 2 153.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000041298 Katnal1 ENSMUST00000047257 ENSMUSP00000043210 TRANSLATION protein_coding - CCDS39404.1 1 488.0 13.0 8.05 33.9 166.7 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000041298 Katnal1 ENSMUST00000110508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039244 Ints15 ENSMUST00000159406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039244 Ints15 ENSMUST00000160498 - NO_TRANSLATION retained_intron ENSMUSG00000039244 Ints15 ENSMUST00000046418 ENSMUSP00000041800 TRANSLATION protein_coding - CCDS19839.1 1 448.0 0.0 0.0 11.2 421.9 0.0 -4,-6 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000039244 Ints15 ENSMUST00000162332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036718 Micall2 ENSMUST00000165645 ENSMUSP00000132479 TRANSLATION nonsense_mediated_decay start - 3 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036718 Micall2 ENSMUST00000044642 ENSMUSP00000039707 TRANSLATION protein_coding - CCDS39353.2 1 1009.0 9.0 5.83 0.0 252.1 0.0 -4,-5 1.0 25 18.0 PRINCIPAL:1 ENSMUSG00000036718 Micall2 ENSMUST00000164584 - NO_TRANSLATION retained_intron ENSMUSG00000036718 Micall2 ENSMUST00000170773 ENSMUSP00000127937 TRANSLATION protein_coding - - 1 926.0 9.0 3.93 0.0 165.6 0.0 -4,-5 0.012 24 9.012 MINOR ENSMUSG00000032741 Tpcn1 ENSMUST00000200708 - NO_TRANSLATION retained_intron ENSMUSG00000032741 Tpcn1 ENSMUST00000202072 - NO_TRANSLATION retained_intron ENSMUSG00000032741 Tpcn1 ENSMUST00000046426 ENSMUSP00000042188 TRANSLATION protein_coding - CCDS39239.1 1 817.0 0.0 20.105 11.4 202.5 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000032741 Tpcn1 ENSMUST00000201601 - NO_TRANSLATION retained_intron ENSMUSG00000054932 Afp ENSMUST00000200693 ENSMUSP00000144019 TRANSLATION protein_coding stop - 2 121.0 0.0 1.45 0.0 50.5 0.0 3,-2 0.0001 - -2.0 MINOR ENSMUSG00000054932 Afp ENSMUST00000200728 - NO_TRANSLATION retained_intron ENSMUSG00000054932 Afp ENSMUST00000042755 ENSMUSP00000041006 TRANSLATION protein_coding - CCDS19413.1 1 605.0 0.0 9.79 10.0 481.8 0.0 3,-2 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000054932 Afp ENSMUST00000202209 - NO_TRANSLATION retained_intron ENSMUSG00000054932 Afp ENSMUST00000201061 - NO_TRANSLATION retained_intron ENSMUSG00000092094 Zfp804b ENSMUST00000164784 ENSMUSP00000130571 TRANSLATION protein_coding start - 5 1307.0 4.0 2.0 0.0 29.3 0.0 -4,-5 0.2539 - -2.0 MINOR ENSMUSG00000092094 Zfp804b ENSMUST00000200317 ENSMUSP00000143568 TRANSLATION protein_coding - CCDS80204.1 5 1343.0 4.0 2.0 4.3 29.3 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000029642 Polr1d ENSMUST00000200993 ENSMUSP00000144185 TRANSLATION protein_coding - - 5 33.0 0.0 0.948 0.0 0.0 0.0 -4,-5 0.0 - 3.93 MINOR ENSMUSG00000029642 Polr1d ENSMUST00000202444 ENSMUSP00000144455 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 0.948 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029642 Polr1d ENSMUST00000201007 - NO_TRANSLATION retained_intron ENSMUSG00000029642 Polr1d ENSMUST00000110557 ENSMUSP00000106186 TRANSLATION protein_coding - CCDS39397.1 1 126.0 0.0 1.448 8.4 0.0 0.0 -4,-5 0.7724 1 8.742 MINOR ENSMUSG00000029642 Polr1d ENSMUST00000196288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029642 Polr1d ENSMUST00000050970 ENSMUSP00000058355 TRANSLATION protein_coding - CCDS19876.1 1 133.0 0.0 1.198 9.1 93.8 0.0 -4,-5 1.0 6 13.962 PRINCIPAL:1 ENSMUSG00000029082 Bst1 ENSMUST00000125838 - NO_TRANSLATION retained_intron ENSMUSG00000029082 Bst1 ENSMUST00000118126 - NO_TRANSLATION retained_intron ENSMUSG00000029082 Bst1 ENSMUST00000101237 ENSMUSP00000098796 TRANSLATION protein_coding - CCDS19264.1 1 311.0 0.0 7.3 0.1 331.1 0.0 3,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000029082 Bst1 ENSMUST00000126976 ENSMUSP00000143382 TRANSLATION nonsense_mediated_decay - - 5 67.0 0.0 0.8 0.0 0.0 0.0 3,-2 0.0041 - -2.0 MINOR ENSMUSG00000029291 Rufy3 ENSMUST00000196894 ENSMUSP00000143770 TRANSLATION protein_coding - CCDS80323.1 1 519.0 0.0 4.0 0.4 109.5 0.0 -4,-5 0.0921 21 9.624 MINOR ENSMUSG00000029291 Rufy3 ENSMUST00000031229 ENSMUSP00000031229 TRANSLATION protein_coding - CCDS19403.1 1 469.0 0.0 4.0 32.3 109.5 0.0 -4,-5 0.9987 21 13.624 MINOR ENSMUSG00000029291 Rufy3 ENSMUST00000197664 - NO_TRANSLATION retained_intron ENSMUSG00000029291 Rufy3 ENSMUST00000199956 - NO_TRANSLATION retained_intron ENSMUSG00000029291 Rufy3 ENSMUST00000199207 - NO_TRANSLATION retained_intron ENSMUSG00000029291 Rufy3 ENSMUST00000196686 ENSMUSP00000143209 TRANSLATION protein_coding - CCDS80325.1 1 487.0 0.0 4.0 28.2 109.5 0.0 -4,-5 1.0 20 13.1 MINOR ENSMUSG00000029291 Rufy3 ENSMUST00000199312 ENSMUSP00000143115 TRANSLATION protein_coding - CCDS80325.1 1 487.0 0.0 4.0 28.2 109.5 0.0 -4,-5 1.0 20 13.1 MINOR ENSMUSG00000029291 Rufy3 ENSMUST00000198965 ENSMUSP00000143302 TRANSLATION protein_coding - CCDS80324.1 1 669.0 3.0 5.1875 0.4 109.5 0.0 -4,-5 0.6243 24 15.0 PRINCIPAL:1 ENSMUSG00000029319 Coq2 ENSMUST00000135146 ENSMUSP00000122631 TRANSLATION nonsense_mediated_decay start - 5 125.0 0.0 0.8 0.0 0.0 0.0 -2,2 0.0006 - -2.0 MINOR ENSMUSG00000029319 Coq2 ENSMUST00000126981 ENSMUSP00000122296 TRANSLATION nonsense_mediated_decay - - 2 157.0 0.0 0.8 0.0 0.0 0.0 -2,2 0.0006 - -2.0 MINOR ENSMUSG00000029319 Coq2 ENSMUST00000031262 ENSMUSP00000031262 TRANSLATION protein_coding - CCDS19465.1 1 374.0 0.0 6.88 0.1 172.6 5.0 -2,2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000029319 Coq2 ENSMUST00000127811 ENSMUSP00000115605 TRANSLATION protein_coding stop - 3 16.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000029319 Coq2 ENSMUST00000135801 ENSMUSP00000119410 TRANSLATION protein_coding stop - 2 71.0 0.0 1.83 0.0 41.9 2.0 -2,-4 0.0012 - -2.0 MINOR ENSMUSG00000029438 Bcl7a ENSMUST00000117971 ENSMUSP00000113264 TRANSLATION protein_coding - - 1 112.0 0.0 1.75 0.0 100.9 0.0 -4,-7 0.0174 1 12.0 MINOR ENSMUSG00000029438 Bcl7a ENSMUST00000031391 ENSMUSP00000031391 TRANSLATION protein_coding - CCDS19661.1 1 210.0 0.0 1.75 20.0 100.9 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000029438 Bcl7a ENSMUST00000120593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000083012 Fam220a ENSMUST00000200267 ENSMUSP00000142548 TRANSLATION protein_coding - CCDS51690.1 1 260.0 0.0 0.0 0.0 242.5 0.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000083012 Fam220a ENSMUST00000196487 ENSMUSP00000143202 TRANSLATION protein_coding - CCDS51690.1 1 260.0 0.0 0.0 0.0 242.5 0.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000083012 Fam220a ENSMUST00000198994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000083012 Fam220a ENSMUST00000198982 - NO_TRANSLATION retained_intron ENSMUSG00000034118 Tpst1 ENSMUST00000040721 ENSMUSP00000035614 TRANSLATION protein_coding - CCDS39293.1 1 370.0 10.0 3.3 18.5 193.9 0.0 -2,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000034118 Tpst1 ENSMUST00000142838 ENSMUSP00000119880 TRANSLATION protein_coding stop - 2 120.0 6.0 0.8 0.0 60.1 0.0 -2,-5 0.0003 2 -2.0 MINOR ENSMUSG00000034118 Tpst1 ENSMUST00000118993 ENSMUSP00000112571 TRANSLATION protein_coding - CCDS39293.1 1 370.0 10.0 3.3 18.5 193.9 0.0 -2,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000034118 Tpst1 ENSMUST00000128335 - NO_TRANSLATION retained_intron ENSMUSG00000046959 Slc26a1 ENSMUST00000136227 ENSMUSP00000116540 TRANSLATION protein_coding stop - 1 416.0 0.0 0.8 0.0 358.9 9.0 -4,-5 0.0044 3 -2.0 MINOR ENSMUSG00000046959 Slc26a1 ENSMUST00000163328 ENSMUSP00000131282 TRANSLATION protein_coding - CCDS19517.1 1 704.0 0.0 1.05 6.8 532.7 11.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000046959 Slc26a1 ENSMUST00000051757 ENSMUSP00000051561 TRANSLATION protein_coding - CCDS19517.1 1 704.0 0.0 1.05 6.8 532.7 11.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000046959 Slc26a1 ENSMUST00000119270 ENSMUSP00000113185 TRANSLATION protein_coding - CCDS80355.1 1 720.0 0.0 1.05 1.0 532.7 11.0 -4,-5 0.5588 6 12.0 MINOR ENSMUSG00000067855 Speer3 ENSMUST00000124677 ENSMUSP00000115668 TRANSLATION protein_coding - CCDS39014.2 1 261.0 0.0 1.44 0.0 83.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079424 Pramel47 ENSMUST00000101015 ENSMUSP00000098577 TRANSLATION protein_coding - CCDS57363.1 1 475.0 2.0 2.2 0.4 0.0 0.0 -4,-7 0.9878 - 8.0 PRINCIPAL:1 ENSMUSG00000067206 Lrrc66 ENSMUST00000152215 ENSMUSP00000120280 TRANSLATION protein_coding stop - 3 110.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000067206 Lrrc66 ENSMUST00000087177 ENSMUSP00000084423 TRANSLATION protein_coding - CCDS19343.1 1 872.0 0.0 2.5 0.0 51.6 0.0 -2,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000029364 Wsb2 ENSMUST00000031309 ENSMUSP00000031309 TRANSLATION protein_coding - CCDS19604.1 1 404.0 0.0 3.84 9.3 156.8 0.0 -4,-5 1.0 4 10.67 PRINCIPAL:4 ENSMUSG00000029364 Wsb2 ENSMUST00000149669 - NO_TRANSLATION retained_intron ENSMUSG00000029364 Wsb2 ENSMUST00000136895 - NO_TRANSLATION retained_intron ENSMUSG00000029364 Wsb2 ENSMUST00000111959 ENSMUSP00000107590 TRANSLATION protein_coding - - 1 406.0 0.0 4.005 6.8 156.8 0.0 -4,-5 0.7671 4 10.097 ALTERNATIVE:1 ENSMUSG00000029364 Wsb2 ENSMUST00000138071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029364 Wsb2 ENSMUST00000125522 - NO_TRANSLATION retained_intron ENSMUSG00000039917 Rhbdd2 ENSMUST00000144633 - NO_TRANSLATION retained_intron ENSMUSG00000039917 Rhbdd2 ENSMUST00000136748 ENSMUSP00000119069 TRANSLATION nonsense_mediated_decay - - 1 97.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 1 -2.0 MINOR ENSMUSG00000039917 Rhbdd2 ENSMUST00000199368 ENSMUSP00000143780 TRANSLATION nonsense_mediated_decay start - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039917 Rhbdd2 ENSMUST00000129134 - NO_TRANSLATION retained_intron ENSMUSG00000039917 Rhbdd2 ENSMUST00000084599 - NO_TRANSLATION retained_intron ENSMUSG00000039917 Rhbdd2 ENSMUST00000130647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039917 Rhbdd2 ENSMUST00000043707 ENSMUSP00000049060 TRANSLATION protein_coding - CCDS19743.1 1 361.0 0.0 0.9 9.6 75.3 0.0 -3,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000096664 Gm3409 ENSMUST00000199142 ENSMUSP00000142652 TRANSLATION protein_coding - - 5 319.0 0.0 2.5 0.0 28.8 0.0 -4,0 0.7582 - 6.0 PRINCIPAL:4 ENSMUSG00000096664 Gm3409 ENSMUST00000110597 ENSMUSP00000106227 TRANSLATION protein_coding - - 5 307.0 0.0 2.5 0.0 28.8 0.0 -4,0 0.0877 - 6.0 ALTERNATIVE:2 ENSMUSG00000096664 Gm3409 ENSMUST00000110599 ENSMUSP00000106229 TRANSLATION protein_coding - CCDS85006.1 5 315.0 0.0 2.5 0.0 28.8 0.0 -4,0 0.5655 - 6.0 ALTERNATIVE:2 ENSMUSG00000105096 Gbp10 ENSMUST00000065588 ENSMUSP00000069042 TRANSLATION protein_coding - CCDS51581.1 1 611.0 15.0 9.6 0.0 758.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000105096 Gbp10 ENSMUST00000196634 - NO_TRANSLATION retained_intron ENSMUSG00000029718 Pcolce ENSMUST00000148662 - NO_TRANSLATION retained_intron ENSMUSG00000029718 Pcolce ENSMUST00000197912 ENSMUSP00000142608 TRANSLATION protein_coding start - 5 246.0 3.0 5.0 0.0 137.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000029718 Pcolce ENSMUST00000031731 ENSMUSP00000031731 TRANSLATION protein_coding - CCDS39334.1 1 468.0 8.0 8.31 2.3 250.2 0.0 4,-1 1.0 10 14.7 PRINCIPAL:2 ENSMUSG00000029718 Pcolce ENSMUST00000128755 - NO_TRANSLATION retained_intron ENSMUSG00000029718 Pcolce ENSMUST00000142675 ENSMUSP00000115654 TRANSLATION protein_coding stop - 2 214.0 5.0 4.83 0.0 157.5 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000029718 Pcolce ENSMUST00000054564 ENSMUSP00000057002 TRANSLATION protein_coding - - 5 493.0 8.0 8.46 0.3 250.2 0.0 4,-1 0.2704 9 14.0 ALTERNATIVE:2 ENSMUSG00000029718 Pcolce ENSMUST00000137210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029718 Pcolce ENSMUST00000131703 - NO_TRANSLATION retained_intron ENSMUSG00000029718 Pcolce ENSMUST00000124693 ENSMUSP00000120749 TRANSLATION protein_coding stop - 5 124.0 3.0 2.13 0.0 78.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029718 Pcolce ENSMUST00000155251 ENSMUSP00000121575 TRANSLATION protein_coding stop - 5 124.0 3.0 2.13 0.0 78.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029718 Pcolce ENSMUST00000136649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029718 Pcolce ENSMUST00000146589 - NO_TRANSLATION retained_intron ENSMUSG00000029650 Slc46a3 ENSMUST00000118527 ENSMUSP00000113879 TRANSLATION protein_coding - CCDS19880.1 1 460.0 0.0 1.37 12.5 50.4 12.0 -1,-4 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000029650 Slc46a3 ENSMUST00000138244 ENSMUSP00000120032 TRANSLATION protein_coding stop - 2 47.0 0.0 0.32 0.0 0.0 1.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000029650 Slc46a3 ENSMUST00000152064 - NO_TRANSLATION retained_intron ENSMUSG00000029650 Slc46a3 ENSMUST00000031655 ENSMUSP00000031655 TRANSLATION protein_coding - CCDS19880.1 1 460.0 0.0 1.37 12.5 50.4 12.0 -1,-4 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000049387 Cox7b2 ENSMUST00000050129 ENSMUSP00000060890 TRANSLATION protein_coding - CCDS39106.1 1 82.0 0.0 1.0 9.8 122.7 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067848 4933402N22Rik ENSMUST00000170301 ENSMUSP00000130317 TRANSLATION protein_coding - CCDS51414.1 1 157.0 0.0 1.306 0.0 80.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067848 4933402N22Rik ENSMUST00000168329 ENSMUSP00000130833 TRANSLATION protein_coding start - 1 190.0 0.0 1.306 0.0 80.6 0.0 -4,-6 0.0433 - -2.0 MINOR ENSMUSG00000038780 Smurf1 ENSMUST00000110677 ENSMUSP00000106305 TRANSLATION protein_coding - - 5 757.0 0.0 14.31 4.2 463.6 0.0 -4,-2 0.2814 4 8.39 MINOR ENSMUSG00000038780 Smurf1 ENSMUST00000085684 ENSMUSP00000082827 TRANSLATION protein_coding - CCDS39380.1 1 731.0 0.0 14.31 21.0 463.6 0.0 -4,-2 0.9839 4 11.75 PRINCIPAL:3 ENSMUSG00000038780 Smurf1 ENSMUST00000126822 - NO_TRANSLATION retained_intron ENSMUSG00000038780 Smurf1 ENSMUST00000100461 ENSMUSP00000098029 TRANSLATION protein_coding - CCDS39381.1 1 728.0 0.0 14.31 21.0 464.8 0.0 -4,-2 1.0 3 12.0 ALTERNATIVE:1 ENSMUSG00000038780 Smurf1 ENSMUST00000198621 ENSMUSP00000142841 TRANSLATION protein_coding start/stop - 5 309.0 0.0 4.71 0.0 103.3 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000029475 Kdm2b ENSMUST00000118027 ENSMUSP00000114052 TRANSLATION protein_coding - - 5 1266.0 33.0 17.182 0.0 219.0 0.0 -4,-5 0.2155 7 13.262 MINOR ENSMUSG00000029475 Kdm2b ENSMUST00000147544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029475 Kdm2b ENSMUST00000046073 ENSMUSP00000038229 TRANSLATION protein_coding - CCDS39259.1 1 1309.0 33.0 17.55 10.2 219.0 0.0 -4,-5 1.0 7 17.0 PRINCIPAL:4 ENSMUSG00000029475 Kdm2b ENSMUST00000139674 - NO_TRANSLATION retained_intron ENSMUSG00000029475 Kdm2b ENSMUST00000145082 ENSMUSP00000114731 TRANSLATION protein_coding stop - 2 286.0 11.0 3.75 0.0 23.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029475 Kdm2b ENSMUST00000152872 ENSMUSP00000119746 TRANSLATION protein_coding start/stop - 3 296.0 10.0 2.25 0.0 94.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029475 Kdm2b ENSMUST00000127403 ENSMUSP00000120912 TRANSLATION nonsense_mediated_decay - - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029475 Kdm2b ENSMUST00000150543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029475 Kdm2b ENSMUST00000132419 - NO_TRANSLATION retained_intron ENSMUSG00000029475 Kdm2b ENSMUST00000143273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029475 Kdm2b ENSMUST00000121739 ENSMUSP00000114049 TRANSLATION protein_coding - - 5 1254.0 33.0 17.15 3.3 219.0 0.0 -4,-5 0.2676 7 13.952 MINOR ENSMUSG00000029475 Kdm2b ENSMUST00000156474 ENSMUSP00000118488 TRANSLATION protein_coding stop - 1 514.0 17.0 8.9 0.0 29.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029475 Kdm2b ENSMUST00000031435 ENSMUSP00000031435 TRANSLATION protein_coding - CCDS19657.1 1 776.0 16.0 8.05 2.1 195.8 0.0 -4,-5 0.1096 4 2.074 MINOR ENSMUSG00000029475 Kdm2b ENSMUST00000174357 - NO_TRANSLATION retained_intron ENSMUSG00000029475 Kdm2b ENSMUST00000138929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029475 Kdm2b ENSMUST00000173355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029475 Kdm2b ENSMUST00000123479 - NO_TRANSLATION retained_intron ENSMUSG00000029475 Kdm2b ENSMUST00000129998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029475 Kdm2b ENSMUST00000086200 ENSMUSP00000083376 TRANSLATION protein_coding - - 5 1303.0 33.0 17.55 9.1 219.0 0.0 -4,-5 0.8195 7 16.64 ALTERNATIVE:1 ENSMUSG00000029475 Kdm2b ENSMUST00000134501 - NO_TRANSLATION retained_intron ENSMUSG00000009013 Dynll1 ENSMUST00000202980 - NO_TRANSLATION retained_intron ENSMUSG00000009013 Dynll1 ENSMUST00000112090 ENSMUSP00000107720 TRANSLATION protein_coding - CCDS39227.1 2 89.0 0.0 2.0 36.9 146.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000009013 Dynll1 ENSMUST00000123292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009013 Dynll1 ENSMUST00000009157 ENSMUSP00000009157 TRANSLATION protein_coding - CCDS39227.1 1 89.0 0.0 2.0 36.9 146.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000009013 Dynll1 ENSMUST00000127552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009013 Dynll1 ENSMUST00000125959 - NO_TRANSLATION retained_intron ENSMUSG00000072774 Zfp951 ENSMUST00000186219 ENSMUSP00000140625 TRANSLATION protein_coding - CCDS80351.1 5 451.0 40.0 1.15 0.0 206.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000072774 Zfp951 ENSMUST00000089906 ENSMUSP00000087350 TRANSLATION protein_coding - - 5 451.0 40.0 1.15 0.0 206.1 0.0 -4,-7 0.7193 - 14.0 ALTERNATIVE:2 ENSMUSG00000072774 Zfp951 ENSMUST00000191135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063146 Clip2 ENSMUST00000036999 ENSMUSP00000037431 TRANSLATION protein_coding - CCDS39309.1 1 1012.0 0.0 2.6 5.4 160.7 0.0 -4,-7 0.9012 33 9.492 ALTERNATIVE:1 ENSMUSG00000063146 Clip2 ENSMUST00000202408 - NO_TRANSLATION retained_intron ENSMUSG00000063146 Clip2 ENSMUST00000100647 ENSMUSP00000098212 TRANSLATION protein_coding - CCDS39310.1 1 1047.0 0.0 2.6 6.9 160.7 0.0 -4,-7 1.0 35 10.0 PRINCIPAL:3 ENSMUSG00000056586 Zar1l ENSMUST00000118769 ENSMUSP00000114116 TRANSLATION protein_coding - CCDS51709.1 1 291.0 7.0 2.75 0.1 36.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000029343 Crybb1 ENSMUST00000131673 ENSMUSP00000118399 TRANSLATION protein_coding stop - 2 236.0 3.0 4.0 0.0 191.3 0.0 -4,-5 0.0186 12 -2.0 MINOR ENSMUSG00000029343 Crybb1 ENSMUST00000031286 ENSMUSP00000031286 TRANSLATION protein_coding - CCDS19537.1 1 250.0 3.0 4.0 7.4 191.3 0.0 -4,-5 1.0 14 17.0 PRINCIPAL:1 ENSMUSG00000029343 Crybb1 ENSMUST00000112375 ENSMUSP00000107994 TRANSLATION protein_coding - CCDS19537.1 3 250.0 3.0 4.0 7.4 191.3 0.0 -4,-5 1.0 14 17.0 PRINCIPAL:1 ENSMUSG00000029288 Ambn ENSMUST00000198265 ENSMUSP00000142944 TRANSLATION protein_coding - CCDS80322.1 1 422.0 0.0 0.0 1.1 697.0 0.0 2,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000029288 Ambn ENSMUST00000031226 ENSMUSP00000031226 TRANSLATION protein_coding - CCDS51539.1 1 407.0 0.0 0.0 0.3 622.2 0.0 2,-2 0.169 - 1.512 MINOR ENSMUSG00000000149 Gna12 ENSMUST00000198447 ENSMUSP00000143414 TRANSLATION protein_coding start - 5 316.0 21.0 3.0 0.0 293.2 0.0 -4,0 0.002 2 -2.0 MINOR ENSMUSG00000000149 Gna12 ENSMUST00000000153 ENSMUSP00000000153 TRANSLATION protein_coding - CCDS19825.1 1 379.0 23.0 4.1 18.5 348.7 0.0 -4,-2 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000070733 Fryl ENSMUST00000148433 - NO_TRANSLATION retained_intron ENSMUSG00000070733 Fryl ENSMUST00000094700 ENSMUSP00000092289 TRANSLATION protein_coding - CCDS19337.2 2 3007.0 0.0 0.0 5.2 829.6 0.0 -4,-5 1.0 50 8.0 PRINCIPAL:1 ENSMUSG00000070733 Fryl ENSMUST00000143665 - NO_TRANSLATION retained_intron ENSMUSG00000070733 Fryl ENSMUST00000153923 - NO_TRANSLATION retained_intron ENSMUSG00000070733 Fryl ENSMUST00000202806 ENSMUSP00000143983 TRANSLATION protein_coding start - 5 331.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 6 -2.0 MINOR ENSMUSG00000070733 Fryl ENSMUST00000202697 ENSMUSP00000143824 TRANSLATION protein_coding start - 5 1230.0 0.0 0.0 0.0 254.0 0.0 -4,-2 0.0134 19 -2.0 MINOR ENSMUSG00000070733 Fryl ENSMUST00000175890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070733 Fryl ENSMUST00000101127 ENSMUSP00000098687 TRANSLATION protein_coding - CCDS19337.2 5 3007.0 0.0 0.0 5.2 829.6 0.0 -4,-5 1.0 50 8.0 PRINCIPAL:1 ENSMUSG00000070733 Fryl ENSMUST00000156661 - NO_TRANSLATION retained_intron ENSMUSG00000070733 Fryl ENSMUST00000201841 - NO_TRANSLATION retained_intron ENSMUSG00000070733 Fryl ENSMUST00000146953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070733 Fryl ENSMUST00000153903 ENSMUSP00000119385 TRANSLATION protein_coding start/stop - 5 200.0 0.0 0.0 0.0 200.1 0.0 -4,-5 0.0001 6 -2.0 MINOR ENSMUSG00000070733 Fryl ENSMUST00000201405 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070733 Fryl ENSMUST00000176910 ENSMUSP00000135794 TRANSLATION protein_coding stop - 3 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000070733 Fryl ENSMUST00000201277 ENSMUSP00000144215 TRANSLATION protein_coding start/stop - 3 241.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 6 -2.0 MINOR ENSMUSG00000070733 Fryl ENSMUST00000201200 - NO_TRANSLATION retained_intron ENSMUSG00000070733 Fryl ENSMUST00000202381 ENSMUSP00000144183 TRANSLATION protein_coding start/stop - 5 1464.0 0.0 0.0 0.0 254.0 0.0 -4,-5 0.0213 19 -2.0 MINOR ENSMUSG00000070733 Fryl ENSMUST00000123446 - NO_TRANSLATION retained_intron ENSMUSG00000070733 Fryl ENSMUST00000202413 - NO_TRANSLATION retained_intron ENSMUSG00000070733 Fryl ENSMUST00000152631 ENSMUSP00000115208 TRANSLATION protein_coding start - 3 124.0 0.0 0.0 0.0 153.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000095503 Pramel43 ENSMUST00000201071 ENSMUSP00000144063 TRANSLATION protein_coding - - 1 481.0 2.0 2.3 0.4 0.0 0.0 -4,-7 0.649 - 8.0 PRINCIPAL:1 ENSMUSG00000004642 Slbp ENSMUST00000075670 ENSMUSP00000075093 TRANSLATION protein_coding - - 1 250.0 0.0 2.0 0.0 101.1 0.0 -4,-7 0.0198 1 12.0 MINOR ENSMUSG00000004642 Slbp ENSMUST00000126581 - NO_TRANSLATION retained_intron ENSMUSG00000004642 Slbp ENSMUST00000151081 ENSMUSP00000121978 TRANSLATION protein_coding stop - 2 33.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000004642 Slbp ENSMUST00000139518 ENSMUSP00000144475 TRANSLATION protein_coding - - 2 219.0 0.0 2.0 0.0 101.1 0.0 -4,-7 0.0128 1 12.0 MINOR ENSMUSG00000004642 Slbp ENSMUST00000143029 - NO_TRANSLATION retained_intron ENSMUSG00000004642 Slbp ENSMUST00000057551 ENSMUSP00000062930 TRANSLATION protein_coding - CCDS19205.1 1 275.0 0.0 2.0 6.1 101.1 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000004642 Slbp ENSMUST00000148153 - NO_TRANSLATION retained_intron ENSMUSG00000004642 Slbp ENSMUST00000101354 ENSMUSP00000098906 TRANSLATION protein_coding - CCDS80257.1 1 255.0 0.0 2.0 0.0 101.1 0.0 -4,-7 0.2258 - 12.0 MINOR ENSMUSG00000004642 Slbp ENSMUST00000146889 - NO_TRANSLATION retained_intron ENSMUSG00000029518 Rab35 ENSMUST00000138885 ENSMUSP00000138402 TRANSLATION nonsense_mediated_decay - - 3 55.0 8.0 1.3 0.0 30.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029518 Rab35 ENSMUST00000031492 ENSMUSP00000031492 TRANSLATION protein_coding - CCDS19596.1 1 201.0 24.0 5.25 29.7 200.6 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000043430 Psapl1 ENSMUST00000052224 ENSMUSP00000100594 TRANSLATION protein_coding - CCDS39072.1 - 525.0 0.0 0.0 0.0 237.6 0.0 4,-1 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000052776 Oas1a ENSMUST00000080322 ENSMUSP00000079198 TRANSLATION protein_coding - CCDS19630.1 1 367.0 9.0 5.0 0.4 325.1 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000002240 Prr27 ENSMUST00000101056 ENSMUSP00000098617 TRANSLATION protein_coding - CCDS51535.1 1 352.0 0.0 0.698 0.0 0.0 0.0 2,2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000002240 Prr27 ENSMUST00000002310 ENSMUSP00000002310 TRANSLATION protein_coding - CCDS39134.1 1 344.0 0.0 0.5 0.0 0.0 0.0 4,-2 0.468 3 4.296 MINOR ENSMUSG00000029723 Spacdr ENSMUST00000129349 - NO_TRANSLATION retained_intron ENSMUSG00000029723 Spacdr ENSMUST00000031738 ENSMUSP00000031738 TRANSLATION protein_coding - - 3 210.0 0.0 0.0 0.4 266.8 0.0 -4,-1 0.1654 1 0.666 MINOR ENSMUSG00000029723 Spacdr ENSMUST00000129399 - NO_TRANSLATION retained_intron ENSMUSG00000029723 Spacdr ENSMUST00000110983 ENSMUSP00000106611 TRANSLATION protein_coding - - 1 149.0 0.0 0.0 0.0 101.7 0.0 -4,-1 0.0 - 0.0 MINOR ENSMUSG00000029723 Spacdr ENSMUST00000138698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029723 Spacdr ENSMUST00000100540 ENSMUSP00000098108 TRANSLATION protein_coding - CCDS57393.1 1 509.0 0.0 0.5 0.0 266.8 0.0 -4,-5 0.1706 11 2.664 MINOR ENSMUSG00000029723 Spacdr ENSMUST00000110985 ENSMUSP00000106613 TRANSLATION protein_coding - - 2 168.0 0.0 1.5 1.1 99.3 0.0 -4,-7 0.1442 6 8.052 MINOR ENSMUSG00000029723 Spacdr ENSMUST00000100539 ENSMUSP00000098107 TRANSLATION protein_coding - CCDS19776.1 1 387.0 0.0 1.5 4.8 99.3 0.0 -4,-5 1.0 12 10.0 PRINCIPAL:1 ENSMUSG00000029723 Spacdr ENSMUST00000141733 ENSMUSP00000120835 TRANSLATION protein_coding start - 2 96.0 0.0 1.5 0.0 99.3 0.0 -4,-7 0.0406 2 -2.0 MINOR ENSMUSG00000029610 Aimp2 ENSMUST00000149473 - NO_TRANSLATION retained_intron ENSMUSG00000029610 Aimp2 ENSMUST00000128440 - NO_TRANSLATION retained_intron ENSMUSG00000029610 Aimp2 ENSMUST00000100483 ENSMUSP00000098052 TRANSLATION protein_coding - CCDS39374.1 1 280.0 0.0 2.0 19.6 24.8 0.0 -4,-5 0.7583 6 9.316 MINOR ENSMUSG00000029610 Aimp2 ENSMUST00000031613 ENSMUSP00000031613 TRANSLATION protein_coding - CCDS51692.1 1 320.0 0.0 3.0 12.1 102.9 0.0 -4,-7 1.0 7 14.388 PRINCIPAL:1 ENSMUSG00000029551 Psmg3 ENSMUST00000182743 - NO_TRANSLATION retained_intron ENSMUSG00000029551 Psmg3 ENSMUST00000031531 ENSMUSP00000031531 TRANSLATION protein_coding - CCDS19815.1 1 122.0 0.0 2.0 26.1 98.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000029551 Psmg3 ENSMUST00000182602 ENSMUSP00000138161 TRANSLATION protein_coding - CCDS19815.1 1 122.0 0.0 2.0 26.1 98.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000053553 3110082I17Rik ENSMUST00000198474 ENSMUSP00000142949 TRANSLATION protein_coding - - 2 178.0 0.0 0.95 0.0 40.7 0.0 -4,-5 0.0006 3 6.324 MINOR ENSMUSG00000053553 3110082I17Rik ENSMUST00000197512 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053553 3110082I17Rik ENSMUST00000196267 - NO_TRANSLATION retained_intron ENSMUSG00000053553 3110082I17Rik ENSMUST00000066052 ENSMUSP00000069230 TRANSLATION protein_coding - CCDS51684.1 1 195.0 0.0 1.75 0.4 79.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000029545 Acads ENSMUST00000131726 - NO_TRANSLATION retained_intron ENSMUSG00000029545 Acads ENSMUST00000153374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029545 Acads ENSMUST00000031524 ENSMUSP00000031524 TRANSLATION protein_coding - CCDS19579.1 1 412.0 30.0 8.5 11.4 380.7 0.0 -4,0 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000029545 Acads ENSMUST00000141142 - NO_TRANSLATION retained_intron ENSMUSG00000029405 G3bp2 ENSMUST00000202123 ENSMUSP00000143804 TRANSLATION protein_coding stop - 1 133.0 0.0 3.25 0.0 117.2 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000029405 G3bp2 ENSMUST00000202258 ENSMUSP00000144456 TRANSLATION protein_coding - CCDS19427.1 1 482.0 0.0 5.45 24.9 167.8 0.0 -4,-6 1.0 17 12.0 PRINCIPAL:4 ENSMUSG00000029405 G3bp2 ENSMUST00000164378 ENSMUSP00000128353 TRANSLATION protein_coding - CCDS19427.1 1 482.0 0.0 5.45 24.9 167.8 0.0 -4,-6 1.0 17 12.0 PRINCIPAL:4 ENSMUSG00000029405 G3bp2 ENSMUST00000202352 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029405 G3bp2 ENSMUST00000201820 ENSMUSP00000144404 TRANSLATION protein_coding stop - 3 117.0 0.0 2.75 0.0 97.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000029405 G3bp2 ENSMUST00000201824 - NO_TRANSLATION retained_intron ENSMUSG00000029405 G3bp2 ENSMUST00000167918 ENSMUSP00000132469 TRANSLATION protein_coding - CCDS39149.1 1 449.0 0.0 5.45 24.9 167.8 0.0 -4,-6 0.9588 17 12.0 ALTERNATIVE:1 ENSMUSG00000029405 G3bp2 ENSMUST00000169094 ENSMUSP00000128244 TRANSLATION protein_coding - CCDS19427.1 1 482.0 0.0 5.45 24.9 167.8 0.0 -4,-6 1.0 17 12.0 PRINCIPAL:4 ENSMUSG00000029405 G3bp2 ENSMUST00000202125 - NO_TRANSLATION retained_intron ENSMUSG00000029405 G3bp2 ENSMUST00000113127 ENSMUSP00000108752 TRANSLATION protein_coding - CCDS39149.1 1 449.0 0.0 5.45 24.9 167.8 0.0 -4,-6 0.9588 17 12.0 ALTERNATIVE:1 ENSMUSG00000053094 Tmem248 ENSMUST00000065329 ENSMUSP00000067501 TRANSLATION protein_coding - CCDS39295.1 5 314.0 0.0 0.0 31.6 278.8 2.0 -4,-7 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000053094 Tmem248 ENSMUST00000202305 ENSMUSP00000144452 TRANSLATION protein_coding stop - 3 148.0 0.0 0.0 0.0 151.7 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000053094 Tmem248 ENSMUST00000202612 ENSMUSP00000144653 TRANSLATION protein_coding stop - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053094 Tmem248 ENSMUST00000200802 ENSMUSP00000144363 TRANSLATION protein_coding stop - 3 107.0 0.0 0.0 0.0 110.2 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000053094 Tmem248 ENSMUST00000111298 ENSMUSP00000106929 TRANSLATION protein_coding - CCDS39295.1 1 314.0 0.0 0.0 31.6 278.8 2.0 -4,-7 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000066952 Myo1h ENSMUST00000197773 - NO_TRANSLATION retained_intron ENSMUSG00000066952 Myo1h ENSMUST00000196467 ENSMUSP00000144133 TRANSLATION protein_coding - - 1 189.0 0.0 4.37 0.0 52.7 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000066952 Myo1h ENSMUST00000169347 ENSMUSP00000132905 TRANSLATION protein_coding - - 5 1038.0 15.0 24.35 8.7 893.4 0.0 -4,-6 0.7755 - 16.043 ALTERNATIVE:1 ENSMUSG00000066952 Myo1h ENSMUST00000196676 ENSMUSP00000144682 TRANSLATION protein_coding - - 1 213.0 0.0 5.12 0.0 107.1 0.0 -4,-2 0.0 - 2.0 MINOR ENSMUSG00000066952 Myo1h ENSMUST00000199567 ENSMUSP00000144492 TRANSLATION protein_coding - - 1 222.0 0.0 4.79 0.0 104.0 0.0 -4,-2 0.0005 - 0.0 MINOR ENSMUSG00000066952 Myo1h ENSMUST00000125230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066952 Myo1h ENSMUST00000152694 - NO_TRANSLATION retained_intron ENSMUSG00000066952 Myo1h ENSMUST00000124316 ENSMUSP00000118824 TRANSLATION protein_coding - - 5 958.0 15.0 22.4 0.0 820.0 0.0 -4,-5 0.0598 - 8.1 MINOR ENSMUSG00000066952 Myo1h ENSMUST00000128379 - NO_TRANSLATION retained_intron ENSMUSG00000066952 Myo1h ENSMUST00000202006 ENSMUSP00000144110 TRANSLATION protein_coding - CCDS51622.1 5 1022.0 15.0 24.25 12.3 893.4 0.0 -4,-5 1.0 - 16.802 PRINCIPAL:4 ENSMUSG00000029622 Arpc1b ENSMUST00000196111 ENSMUSP00000143438 TRANSLATION protein_coding - - 1 376.0 0.0 9.66 25.9 41.3 0.0 -4,-5 0.8247 13 10.94 ALTERNATIVE:1 ENSMUSG00000029622 Arpc1b ENSMUST00000138235 - NO_TRANSLATION retained_intron ENSMUSG00000029622 Arpc1b ENSMUST00000138900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029622 Arpc1b ENSMUST00000144375 - NO_TRANSLATION retained_intron ENSMUSG00000029622 Arpc1b ENSMUST00000136074 ENSMUSP00000115022 TRANSLATION protein_coding start/stop - 3 232.0 0.0 3.41 0.0 18.4 0.0 -4,-1 0.0009 3 -2.0 MINOR ENSMUSG00000029622 Arpc1b ENSMUST00000128229 - NO_TRANSLATION retained_intron ENSMUSG00000029622 Arpc1b ENSMUST00000126343 - NO_TRANSLATION retained_intron ENSMUSG00000029622 Arpc1b ENSMUST00000138922 ENSMUSP00000115515 TRANSLATION protein_coding start - 5 105.0 0.0 2.33 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000029622 Arpc1b ENSMUST00000141602 ENSMUSP00000122340 TRANSLATION protein_coding stop - 5 56.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029622 Arpc1b ENSMUST00000085679 ENSMUSP00000082822 TRANSLATION protein_coding - CCDS19856.1 1 372.0 0.0 9.66 34.9 41.3 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000029622 Arpc1b ENSMUST00000129033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048373 Fgfbp1 ENSMUST00000199894 ENSMUSP00000142520 TRANSLATION protein_coding - CCDS19268.1 3 251.0 0.0 0.5 1.0 240.6 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000048373 Fgfbp1 ENSMUST00000199481 ENSMUSP00000143011 TRANSLATION protein_coding - CCDS19268.1 - 251.0 0.0 0.5 1.0 240.6 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000048373 Fgfbp1 ENSMUST00000061299 ENSMUSP00000056900 TRANSLATION protein_coding - CCDS19268.1 1 251.0 0.0 0.5 1.0 240.6 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000066682 Pilrb2 ENSMUST00000196162 ENSMUSP00000143064 TRANSLATION protein_coding - - 1 224.0 0.0 2.75 0.4 0.0 2.0 0,-2 0.7598 1 6.0 ALTERNATIVE:2 ENSMUSG00000066682 Pilrb2 ENSMUST00000198024 ENSMUSP00000143366 TRANSLATION nonsense_mediated_decay start - 5 29.0 0.0 0.0 0.0 0.0 1.0 -1,-5 0.0388 - -2.0 MINOR ENSMUSG00000066682 Pilrb2 ENSMUST00000199247 ENSMUSP00000142830 TRANSLATION protein_coding start - 5 96.0 0.0 1.15 0.0 0.0 0.0 -4,-7 0.0184 - -2.0 MINOR ENSMUSG00000066682 Pilrb2 ENSMUST00000199773 ENSMUSP00000142492 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 0,-2 0.0974 - -2.0 MINOR ENSMUSG00000066682 Pilrb2 ENSMUST00000164886 ENSMUSP00000131233 TRANSLATION protein_coding - CCDS51676.1 1 225.0 0.0 2.75 0.4 0.0 2.0 0,-2 0.8046 1 6.0 PRINCIPAL:4 ENSMUSG00000066682 Pilrb2 ENSMUST00000197411 - NO_TRANSLATION retained_intron ENSMUSG00000090302 Smr2l ENSMUST00000169154 ENSMUSP00000132464 TRANSLATION protein_coding - CCDS51536.1 1 131.0 0.0 0.0 0.0 122.4 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000051339 2900026A02Rik ENSMUST00000050125 ENSMUSP00000058789 TRANSLATION protein_coding - CCDS39217.1 1 308.0 0.0 0.0 2.1 205.3 0.0 -4,-7 1.0 6 3.0 PRINCIPAL:2 ENSMUSG00000051339 2900026A02Rik ENSMUST00000211733 ENSMUSP00000147419 TRANSLATION protein_coding - - 5 1767.0 0.0 0.0 0.0 205.3 0.0 -4,-7 0.2968 44 2.0 ALTERNATIVE:2 ENSMUSG00000051339 2900026A02Rik ENSMUST00000212276 ENSMUSP00000148442 TRANSLATION protein_coding - CCDS84933.1 5 385.0 0.0 0.0 1.8 205.3 0.0 -4,-5 0.4995 8 2.727 ALTERNATIVE:2 ENSMUSG00000001569 Nom1 ENSMUST00000146347 - NO_TRANSLATION retained_intron ENSMUSG00000001569 Nom1 ENSMUST00000001611 ENSMUSP00000001611 TRANSLATION protein_coding - CCDS19149.1 1 854.0 0.0 1.96 0.0 146.8 0.0 -4,-6 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000029254 Stap1 ENSMUST00000138076 - NO_TRANSLATION retained_intron ENSMUSG00000029254 Stap1 ENSMUST00000123393 - NO_TRANSLATION retained_intron ENSMUSG00000029254 Stap1 ENSMUST00000132546 - NO_TRANSLATION retained_intron ENSMUSG00000029254 Stap1 ENSMUST00000031171 ENSMUSP00000031171 TRANSLATION protein_coding - CCDS80312.1 1 259.0 0.0 5.8 1.3 0.0 0.0 -4,-7 0.0878 3 4.128 MINOR ENSMUSG00000029254 Stap1 ENSMUST00000151556 - NO_TRANSLATION retained_intron ENSMUSG00000029254 Stap1 ENSMUST00000198435 ENSMUSP00000143251 TRANSLATION protein_coding - CCDS19377.1 1 297.0 0.0 6.8 8.1 30.9 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000091375 Vmn2r15 ENSMUST00000233813 ENSMUSP00000156417 TRANSLATION protein_coding - - - 577.0 2.0 1.765 0.0 164.3 0.0 1,-3 0.0023 - 7.916 MINOR ENSMUSG00000091375 Vmn2r15 ENSMUST00000233141 ENSMUSP00000156713 TRANSLATION protein_coding - - - 847.0 4.0 2.245 0.4 378.2 7.0 1,-3 0.8142 - 12.0 ALTERNATIVE:2 ENSMUSG00000091375 Vmn2r15 ENSMUST00000167133 ENSMUSP00000128333 TRANSLATION protein_coding - CCDS51601.1 5 855.0 4.0 2.245 0.0 372.5 7.0 1,-3 0.6583 - 12.0 ALTERNATIVE:2 ENSMUSG00000091375 Vmn2r15 ENSMUST00000232771 ENSMUSP00000156715 TRANSLATION nonsense_mediated_decay - - - 76.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0038 - -2.0 MINOR ENSMUSG00000091375 Vmn2r15 ENSMUST00000233282 ENSMUSP00000156797 TRANSLATION protein_coding - - - 846.0 4.0 2.245 0.4 378.7 7.0 1,-3 0.909 - 12.0 PRINCIPAL:4 ENSMUSG00000091375 Vmn2r15 ENSMUST00000232780 ENSMUSP00000156445 TRANSLATION nonsense_mediated_decay - - - 76.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0038 - -2.0 MINOR ENSMUSG00000092166 Pramel45 ENSMUST00000238517 ENSMUSP00000158634 TRANSLATION protein_coding - - - 481.0 2.0 3.8 0.4 0.0 0.0 -4,-6 0.6426 - 8.0 PRINCIPAL:1 ENSMUSG00000092166 Pramel45 ENSMUST00000238343 ENSMUSP00000158667 TRANSLATION protein_coding - - - 198.0 0.0 1.4 0.0 0.0 0.0 -4,-6 0.0102 - 1.2 MINOR ENSMUSG00000036586 Grifin ENSMUST00000042993 ENSMUSP00000039263 TRANSLATION protein_coding - CCDS39357.1 1 144.0 8.0 2.75 7.8 105.9 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000044339 Alkbh2 ENSMUST00000149418 ENSMUSP00000142877 TRANSLATION protein_coding stop - 2 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0136 - -2.0 MINOR ENSMUSG00000044339 Alkbh2 ENSMUST00000053657 ENSMUSP00000056043 TRANSLATION protein_coding - CCDS19559.1 1 239.0 13.0 3.25 2.4 0.0 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000044339 Alkbh2 ENSMUST00000112279 ENSMUSP00000107898 TRANSLATION protein_coding - CCDS19559.1 1 239.0 13.0 3.25 2.4 0.0 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000029219 Slc10a4 ENSMUST00000031127 ENSMUSP00000031127 TRANSLATION protein_coding - CCDS19336.1 1 437.0 0.0 2.0 2.1 120.5 10.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000029219 Slc10a4 ENSMUST00000201304 ENSMUSP00000144062 TRANSLATION protein_coding - - 1 238.0 0.0 1.6 0.0 34.2 7.0 2,-2 0.007 - 5.622 MINOR ENSMUSG00000061576 Dpp6 ENSMUST00000200274 - NO_TRANSLATION retained_intron ENSMUSG00000061576 Dpp6 ENSMUST00000122171 ENSMUSP00000113441 TRANSLATION protein_coding - CCDS51446.1 1 859.0 3.0 19.75 7.3 499.8 2.0 -4,0 0.7326 24 12.896 MINOR ENSMUSG00000061576 Dpp6 ENSMUST00000071500 ENSMUSP00000071435 TRANSLATION protein_coding - CCDS19139.1 1 804.0 3.0 19.75 13.2 499.8 2.0 -4,-6 0.9956 22 14.668 ALTERNATIVE:1 ENSMUSG00000061576 Dpp6 ENSMUST00000101471 ENSMUSP00000099012 TRANSLATION protein_coding - CCDS51447.1 1 803.0 3.0 19.75 14.3 499.8 2.0 -4,-6 1.0 23 15.0 PRINCIPAL:3 ENSMUSG00000061576 Dpp6 ENSMUST00000148039 ENSMUSP00000115944 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061576 Dpp6 ENSMUST00000149678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061576 Dpp6 ENSMUST00000134175 - NO_TRANSLATION retained_intron ENSMUSG00000061576 Dpp6 ENSMUST00000136574 - NO_TRANSLATION retained_intron ENSMUSG00000061576 Dpp6 ENSMUST00000120555 ENSMUSP00000113849 TRANSLATION protein_coding - CCDS57332.1 1 801.0 3.0 19.75 10.1 499.8 2.0 -4,-7 0.9554 23 13.736 MINOR ENSMUSG00000066640 Fbxl18 ENSMUST00000035985 ENSMUSP00000041700 TRANSLATION protein_coding - CCDS19831.1 1 707.0 0.0 0.0 2.4 29.0 0.0 -4,-5 1.0 11 3.0 PRINCIPAL:2 ENSMUSG00000066640 Fbxl18 ENSMUST00000199067 - NO_TRANSLATION retained_intron ENSMUSG00000066640 Fbxl18 ENSMUST00000197596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066640 Fbxl18 ENSMUST00000156725 - NO_TRANSLATION retained_intron ENSMUSG00000066640 Fbxl18 ENSMUST00000110766 ENSMUSP00000106394 TRANSLATION protein_coding - - 1 771.0 0.0 0.0 0.0 29.0 0.0 -4,-1 0.0863 11 2.0 ALTERNATIVE:2 ENSMUSG00000029720 Gm20605 ENSMUST00000177545 ENSMUSP00000135286 TRANSLATION nonsense_mediated_decay,RT - CCDS19772.1 2 680.0 0.0 6.259 1.3 124.0 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000049907 Rasl11b ENSMUST00000051937 ENSMUSP00000053389 TRANSLATION protein_coding - CCDS39113.1 1 247.0 15.0 2.85 15.9 102.9 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000049907 Rasl11b ENSMUST00000201837 - NO_TRANSLATION retained_intron ENSMUSG00000049907 Rasl11b ENSMUST00000183995 - NO_TRANSLATION retained_intron ENSMUSG00000032850 Rnft2 ENSMUST00000154786 ENSMUSP00000120260 TRANSLATION protein_coding stop - 5 206.0 0.0 0.3 0.0 0.0 1.0 -4,0 0.0019 - -2.0 MINOR ENSMUSG00000032850 Rnft2 ENSMUST00000133372 ENSMUSP00000116025 TRANSLATION protein_coding stop - 5 58.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0007 - -2.0 MINOR ENSMUSG00000032850 Rnft2 ENSMUST00000134281 - NO_TRANSLATION retained_intron ENSMUSG00000032850 Rnft2 ENSMUST00000121369 ENSMUSP00000113749 TRANSLATION protein_coding - CCDS51632.1 1 445.0 8.0 2.501 0.0 38.2 4.0 -4,0 0.4255 3 18.0 MINOR ENSMUSG00000032850 Rnft2 ENSMUST00000144213 - NO_TRANSLATION retained_intron ENSMUSG00000032850 Rnft2 ENSMUST00000117177 ENSMUSP00000112903 TRANSLATION protein_coding - CCDS19611.2 1 446.0 8.0 2.501 9.7 38.2 4.0 -4,0 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000032850 Rnft2 ENSMUST00000132831 ENSMUSP00000120464 TRANSLATION protein_coding start - 3 69.0 2.0 0.375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079659 Tmem243 ENSMUST00000200542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079659 Tmem243 ENSMUST00000196029 ENSMUSP00000142772 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 0.0 0.0 39.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000079659 Tmem243 ENSMUST00000115365 ENSMUSP00000111022 TRANSLATION protein_coding - CCDS39011.1 2 118.0 0.0 0.0 27.2 230.9 0.0 -4,-7 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000079659 Tmem243 ENSMUST00000198935 ENSMUSP00000143141 TRANSLATION protein_coding - - 1 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000029248 Thegl ENSMUST00000118941 ENSMUSP00000112660 TRANSLATION protein_coding - - 3 126.0 0.0 0.0 0.0 40.1 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000029248 Thegl ENSMUST00000031161 ENSMUSP00000031161 TRANSLATION protein_coding - CCDS19369.1 1 459.0 0.0 0.0 0.0 177.0 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000029248 Thegl ENSMUST00000117880 ENSMUSP00000112814 TRANSLATION protein_coding - CCDS19369.1 1 459.0 0.0 0.0 0.0 177.0 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000042719 Naa25 ENSMUST00000131598 - NO_TRANSLATION retained_intron ENSMUSG00000042719 Naa25 ENSMUST00000172908 ENSMUSP00000134345 TRANSLATION nonsense_mediated_decay start - 2 62.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042719 Naa25 ENSMUST00000174322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042719 Naa25 ENSMUST00000042163 ENSMUSP00000038977 TRANSLATION protein_coding - CCDS19633.1 1 972.0 0.0 20.3275 31.2 419.0 0.0 -4,-6 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000042719 Naa25 ENSMUST00000151458 ENSMUSP00000120970 TRANSLATION nonsense_mediated_decay - - 5 100.0 0.0 2.3475 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000042719 Naa25 ENSMUST00000173895 ENSMUSP00000134679 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029334 Prkg2 ENSMUST00000162147 ENSMUSP00000143708 TRANSLATION protein_coding - - 1 107.0 0.0 3.75 0.0 0.0 0.0 -4,-6 0.0 2 0.0 MINOR ENSMUSG00000029334 Prkg2 ENSMUST00000160765 - NO_TRANSLATION retained_intron ENSMUSG00000029334 Prkg2 ENSMUST00000031277 ENSMUSP00000031277 TRANSLATION protein_coding - - 5 733.0 12.0 14.0 5.0 351.9 0.0 -4,-5 0.3989 13 12.024 MINOR ENSMUSG00000029334 Prkg2 ENSMUST00000162619 ENSMUSP00000142743 TRANSLATION protein_coding - - 5 94.0 0.0 3.25 0.0 0.0 0.0 -4,-7 0.0 2 0.0 MINOR ENSMUSG00000029334 Prkg2 ENSMUST00000161490 ENSMUSP00000124963 TRANSLATION protein_coding - CCDS19459.1 1 762.0 19.0 14.75 11.8 367.2 0.0 -4,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000029119 Man2b2 ENSMUST00000124711 ENSMUSP00000115495 TRANSLATION protein_coding start - 1 494.0 0.0 2.713 0.0 261.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000029119 Man2b2 ENSMUST00000147893 ENSMUSP00000114319 TRANSLATION protein_coding start - 5 104.0 0.0 0.766 0.0 23.6 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000029119 Man2b2 ENSMUST00000031002 ENSMUSP00000031002 TRANSLATION protein_coding - CCDS19243.1 1 1018.0 5.0 6.1355 0.0 710.8 0.0 3,-2 1.0 18 17.0 PRINCIPAL:1 ENSMUSG00000029608 Rph3a ENSMUST00000202326 ENSMUSP00000144291 TRANSLATION protein_coding - CCDS39246.1 1 681.0 23.0 11.025 1.1 287.3 0.0 -4,-5 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000029608 Rph3a ENSMUST00000079204 ENSMUSP00000078198 TRANSLATION protein_coding - CCDS39246.1 1 681.0 23.0 11.025 1.1 287.3 0.0 -4,-5 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000029608 Rph3a ENSMUST00000200792 ENSMUSP00000144437 TRANSLATION protein_coding stop - 3 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029608 Rph3a ENSMUST00000202406 ENSMUSP00000143917 TRANSLATION protein_coding - CCDS39246.1 1 681.0 23.0 11.025 1.1 287.3 0.0 -4,-5 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000003161 Sri ENSMUST00000197065 - NO_TRANSLATION retained_intron ENSMUSG00000003161 Sri ENSMUST00000144265 - NO_TRANSLATION retained_intron ENSMUSG00000003161 Sri ENSMUST00000088786 ENSMUSP00000086165 TRANSLATION protein_coding - CCDS19079.1 1 183.0 14.0 4.83 4.5 60.7 0.0 -4,-5 0.3011 9 18.944 MINOR ENSMUSG00000003161 Sri ENSMUST00000145119 - NO_TRANSLATION retained_intron ENSMUSG00000003161 Sri ENSMUST00000003245 - NO_TRANSLATION retained_intron ENSMUSG00000003161 Sri ENSMUST00000148633 ENSMUSP00000118221 TRANSLATION protein_coding - CCDS39009.1 1 198.0 14.0 4.83 15.8 60.7 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000003161 Sri ENSMUST00000149420 - NO_TRANSLATION retained_intron ENSMUSG00000061292 Cyp3a59 ENSMUST00000035571 ENSMUSP00000049494 TRANSLATION protein_coding - CCDS39390.1 1 503.0 30.0 11.7 9.4 420.9 1.0 -2,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000061292 Cyp3a59 ENSMUST00000199212 ENSMUSP00000142591 TRANSLATION nonsense_mediated_decay - - 1 149.0 5.0 3.95 0.0 72.0 1.0 -2,-5 0.0015 - -2.0 MINOR ENSMUSG00000105867 Gm42517 ENSMUST00000197216 ENSMUSP00000152585 TRANSLATION protein_coding - - - 374.0 0.0 0.0 2.5 0.0 0.0 1,-3 0.7321 2 1.0 PRINCIPAL:1 ENSMUSG00000063919 Srrm4 ENSMUST00000150127 - NO_TRANSLATION retained_intron ENSMUSG00000063919 Srrm4 ENSMUST00000222119 ENSMUSP00000152054 TRANSLATION nonsense_mediated_decay start - 5 66.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000063919 Srrm4 ENSMUST00000076124 ENSMUSP00000075488 TRANSLATION protein_coding - CCDS19601.1 1 608.0 0.0 0.0 0.0 86.7 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000063919 Srrm4 ENSMUST00000139425 ENSMUSP00000144367 TRANSLATION protein_coding - - 1 120.0 0.0 0.0 0.0 61.0 0.0 -4,-2 0.0005 - 4.224 MINOR ENSMUSG00000063919 Srrm4 ENSMUST00000201430 - NO_TRANSLATION retained_intron ENSMUSG00000033623 Pcgf3 ENSMUST00000138264 ENSMUSP00000142465 TRANSLATION nonsense_mediated_decay - - 3 56.0 4.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033623 Pcgf3 ENSMUST00000112597 ENSMUSP00000108216 TRANSLATION protein_coding - - 1 178.0 8.0 2.65 0.0 44.5 0.0 -4,-6 0.0 1 12.06 MINOR ENSMUSG00000033623 Pcgf3 ENSMUST00000046975 ENSMUSP00000041790 TRANSLATION protein_coding - CCDS19512.1 1 241.0 8.0 3.825 21.6 104.3 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000033623 Pcgf3 ENSMUST00000151897 - NO_TRANSLATION retained_intron ENSMUSG00000033623 Pcgf3 ENSMUST00000143973 - NO_TRANSLATION retained_intron ENSMUSG00000061755 Bod1l ENSMUST00000202200 - NO_TRANSLATION retained_intron ENSMUSG00000061755 Bod1l ENSMUST00000050556 ENSMUSP00000058618 TRANSLATION protein_coding - CCDS39079.1 5 3032.0 0.0 3.3 0.0 85.8 0.0 -4,-6 1.0 32 8.0 PRINCIPAL:2 ENSMUSG00000061755 Bod1l ENSMUST00000202908 ENSMUSP00000144359 TRANSLATION protein_coding - CCDS80273.1 5 2985.0 0.0 3.3 0.0 85.8 0.0 -4,-6 0.6274 32 8.0 ALTERNATIVE:2 ENSMUSG00000061755 Bod1l ENSMUST00000201291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038023 Atp6v0a2 ENSMUST00000197087 - NO_TRANSLATION retained_intron ENSMUSG00000038023 Atp6v0a2 ENSMUST00000200292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038023 Atp6v0a2 ENSMUST00000037865 ENSMUSP00000039737 TRANSLATION protein_coding - CCDS84963.1 1 856.0 0.0 15.03 11.8 1017.9 0.0 -1,-4 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000038023 Atp6v0a2 ENSMUST00000198382 ENSMUSP00000143284 TRANSLATION nonsense_mediated_decay - - 2 182.0 0.0 2.55 0.0 96.5 0.0 -1,-4 0.0 4 -2.0 MINOR ENSMUSG00000038023 Atp6v0a2 ENSMUST00000197931 - NO_TRANSLATION retained_intron ENSMUSG00000038023 Atp6v0a2 ENSMUST00000199526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038023 Atp6v0a2 ENSMUST00000197161 ENSMUSP00000143461 TRANSLATION nonsense_mediated_decay start - 2 83.0 0.0 0.0 0.0 0.0 0.0 -3,0 0.0004 - -2.0 MINOR ENSMUSG00000056310 Tyw1 ENSMUST00000044204 ENSMUSP00000047318 TRANSLATION protein_coding - CCDS19711.1 1 454.0 20.0 2.4 0.0 90.6 2.0 -4,-7 0.0174 6 6.27 MINOR ENSMUSG00000056310 Tyw1 ENSMUST00000173375 - NO_TRANSLATION retained_intron ENSMUSG00000056310 Tyw1 ENSMUST00000100662 ENSMUSP00000098226 TRANSLATION protein_coding - - 1 386.0 20.0 1.9 0.0 90.6 2.0 -4,-7 0.0038 6 6.27 MINOR ENSMUSG00000056310 Tyw1 ENSMUST00000147619 ENSMUSP00000123693 TRANSLATION protein_coding stop - 2 234.0 20.0 1.95 0.0 90.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000056310 Tyw1 ENSMUST00000040213 ENSMUSP00000037173 TRANSLATION protein_coding - CCDS19712.1 1 721.0 20.0 5.945 1.5 186.1 2.0 -4,-7 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000029413 Naaa ENSMUST00000159732 - NO_TRANSLATION retained_intron ENSMUSG00000029413 Naaa ENSMUST00000175656 ENSMUSP00000135610 TRANSLATION protein_coding start/stop - 3 217.0 0.0 5.25 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000029413 Naaa ENSMUST00000161212 - NO_TRANSLATION retained_intron ENSMUSG00000029413 Naaa ENSMUST00000159345 ENSMUSP00000124582 TRANSLATION protein_coding - CCDS51545.1 1 360.0 0.0 8.66 0.1 80.6 0.0 3,-2 0.5325 8 8.0 ALTERNATIVE:2 ENSMUSG00000029413 Naaa ENSMUST00000113102 ENSMUSP00000108726 TRANSLATION protein_coding - CCDS19428.1 1 362.0 0.0 8.66 0.1 85.9 0.0 3,-2 1.0 9 8.0 PRINCIPAL:2 ENSMUSG00000041453 Rpl21 ENSMUST00000154768 - NO_TRANSLATION retained_intron ENSMUSG00000041453 Rpl21 ENSMUST00000135345 - NO_TRANSLATION retained_intron ENSMUSG00000041453 Rpl21 ENSMUST00000035983 ENSMUSP00000041652 TRANSLATION protein_coding - CCDS19872.1 1 160.0 0.0 4.25 36.9 174.7 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000041453 Rpl21 ENSMUST00000075453 ENSMUSP00000106213 TRANSLATION protein_coding - CCDS19872.1 1 160.0 0.0 4.25 36.9 174.7 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000041453 Rpl21 ENSMUST00000151871 - NO_TRANSLATION retained_intron ENSMUSG00000041453 Rpl21 ENSMUST00000099272 ENSMUSP00000106211 TRANSLATION protein_coding - CCDS19872.1 3 160.0 0.0 4.25 36.9 174.7 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000001844 Zdhhc4 ENSMUST00000159941 ENSMUSP00000124026 TRANSLATION protein_coding stop - 5 178.0 4.0 1.13 0.0 39.0 7.0 -1,-5 0.0037 2 -2.0 MINOR ENSMUSG00000001844 Zdhhc4 ENSMUST00000162941 ENSMUSP00000124997 TRANSLATION protein_coding stop - 5 176.0 4.0 1.13 0.0 33.1 7.0 -1,-5 0.0037 2 -2.0 MINOR ENSMUSG00000001844 Zdhhc4 ENSMUST00000162358 ENSMUSP00000124416 TRANSLATION protein_coding stop - 5 123.0 0.0 0.0 0.0 0.0 7.0 -1,-5 0.0038 1 -2.0 MINOR ENSMUSG00000001844 Zdhhc4 ENSMUST00000159718 - NO_TRANSLATION retained_intron ENSMUSG00000001844 Zdhhc4 ENSMUST00000159813 ENSMUSP00000137935 TRANSLATION nonsense_mediated_decay - - 1 186.0 5.0 0.8 0.0 0.0 7.0 -1,-5 0.0038 2 -2.0 MINOR ENSMUSG00000001844 Zdhhc4 ENSMUST00000162284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001844 Zdhhc4 ENSMUST00000161915 ENSMUSP00000124813 TRANSLATION protein_coding - CCDS19840.1 5 343.0 4.0 1.69 9.0 119.2 9.0 -1,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000001844 Zdhhc4 ENSMUST00000161199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001844 Zdhhc4 ENSMUST00000161333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001844 Zdhhc4 ENSMUST00000162066 ENSMUSP00000125130 TRANSLATION protein_coding stop - 5 89.0 0.0 0.0 0.0 0.0 4.0 -1,-5 0.0023 1 -2.0 MINOR ENSMUSG00000001844 Zdhhc4 ENSMUST00000160061 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001844 Zdhhc4 ENSMUST00000001900 ENSMUSP00000001900 TRANSLATION protein_coding - CCDS19840.1 1 343.0 4.0 1.69 9.0 119.2 9.0 -1,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000001844 Zdhhc4 ENSMUST00000162287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029464 Gpn3 ENSMUST00000123537 ENSMUSP00000120667 TRANSLATION nonsense_mediated_decay start - 5 113.0 1.0 2.5 0.0 143.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029464 Gpn3 ENSMUST00000156978 - NO_TRANSLATION retained_intron ENSMUSG00000029464 Gpn3 ENSMUST00000151173 ENSMUSP00000116560 TRANSLATION protein_coding start - 3 106.0 3.0 1.65 0.0 33.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029464 Gpn3 ENSMUST00000031420 ENSMUSP00000031420 TRANSLATION protein_coding - CCDS19647.1 1 284.0 15.0 6.63 35.3 309.6 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000029464 Gpn3 ENSMUST00000127608 ENSMUSP00000143405 TRANSLATION nonsense_mediated_decay - - 2 189.0 12.0 4.83 0.0 263.9 0.0 -4,-7 0.0021 2 -2.0 MINOR ENSMUSG00000029464 Gpn3 ENSMUST00000146698 ENSMUSP00000120204 TRANSLATION nonsense_mediated_decay start - 3 32.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079555 Haus3 ENSMUST00000201069 - NO_TRANSLATION retained_intron ENSMUSG00000079555 Haus3 ENSMUST00000202042 ENSMUSP00000144049 TRANSLATION protein_coding stop - 3 96.0 0.0 0.0 0.0 94.2 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000079555 Haus3 ENSMUST00000201042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079555 Haus3 ENSMUST00000060049 ENSMUSP00000049973 TRANSLATION protein_coding - CCDS19211.1 1 570.0 0.0 0.0 0.0 273.5 0.0 -4,-5 1.0 11 6.0 PRINCIPAL:1 ENSMUSG00000079555 Haus3 ENSMUST00000202541 ENSMUSP00000144601 TRANSLATION protein_coding stop - 3 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079555 Haus3 ENSMUST00000202290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029212 Gabrb1 ENSMUST00000199967 ENSMUSP00000143682 TRANSLATION protein_coding stop - 3 226.0 0.0 5.25 0.0 173.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029212 Gabrb1 ENSMUST00000031122 ENSMUSP00000031122 TRANSLATION protein_coding - CCDS19329.1 1 474.0 0.0 7.08 22.2 332.3 0.0 -1,-4 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000025533 Asl ENSMUST00000161094 ENSMUSP00000124274 TRANSLATION protein_coding - CCDS51655.1 1 464.0 17.0 12.75 26.5 436.2 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000025533 Asl ENSMUST00000159096 ENSMUSP00000125143 TRANSLATION protein_coding start - 3 267.0 8.0 7.566 0.0 191.1 0.0 -4,-5 0.0001 11 -2.0 MINOR ENSMUSG00000025533 Asl ENSMUST00000159619 ENSMUSP00000123799 TRANSLATION protein_coding - CCDS51655.1 5 464.0 17.0 12.75 26.5 436.2 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000025533 Asl ENSMUST00000160557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025533 Asl ENSMUST00000160129 ENSMUSP00000124579 TRANSLATION protein_coding - CCDS51655.1 5 464.0 17.0 12.75 26.5 436.2 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000025533 Asl ENSMUST00000162230 - NO_TRANSLATION retained_intron ENSMUSG00000025533 Asl ENSMUST00000161884 ENSMUSP00000123861 TRANSLATION protein_coding stop - 3 74.0 1.0 1.0 0.0 23.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000025533 Asl ENSMUST00000161640 ENSMUSP00000124487 TRANSLATION protein_coding stop - 5 262.0 9.0 7.25 0.0 285.4 0.0 -4,-5 0.0 15 -2.0 MINOR ENSMUSG00000029673 Auts2 ENSMUST00000161374 ENSMUSP00000124730 TRANSLATION protein_coding - - 1 789.0 0.0 0.0 0.0 360.4 0.0 -4,-6 0.0887 2 2.0 MINOR ENSMUSG00000029673 Auts2 ENSMUST00000198165 - NO_TRANSLATION retained_intron ENSMUSG00000029673 Auts2 ENSMUST00000196613 - NO_TRANSLATION retained_intron ENSMUSG00000029673 Auts2 ENSMUST00000071591 - NO_TRANSLATION retained_intron ENSMUSG00000029673 Auts2 ENSMUST00000159507 - NO_TRANSLATION retained_intron ENSMUSG00000029673 Auts2 ENSMUST00000182974 ENSMUSP00000159436 TRANSLATION protein_coding - - 5 1262.0 0.0 0.0 4.4 360.4 0.0 -4,-7 1.0 3 4.0 PRINCIPAL:4 ENSMUSG00000029673 Auts2 ENSMUST00000160135 ENSMUSP00000125706 TRANSLATION protein_coding stop - 5 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029673 Auts2 ENSMUST00000161108 - NO_TRANSLATION retained_intron ENSMUSG00000029673 Auts2 ENSMUST00000182575 ENSMUSP00000159435 TRANSLATION protein_coding - - 5 1237.0 0.0 0.0 1.0 360.4 0.0 -4,-7 0.3975 3 2.0 MINOR ENSMUSG00000029673 Auts2 ENSMUST00000100564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029673 Auts2 ENSMUST00000161804 ENSMUSP00000124027 TRANSLATION protein_coding - - 1 804.0 0.0 0.0 0.0 360.4 0.0 -4,-6 0.0887 2 2.0 MINOR ENSMUSG00000029673 Auts2 ENSMUST00000162101 ENSMUSP00000138441 TRANSLATION protein_coding start - 3 142.0 0.0 0.0 0.0 232.2 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029673 Auts2 ENSMUST00000198149 - NO_TRANSLATION retained_intron ENSMUSG00000029673 Auts2 ENSMUST00000183153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029673 Auts2 ENSMUST00000161226 ENSMUSP00000159434 TRANSLATION protein_coding - - 1 1261.0 0.0 0.0 4.4 360.4 0.0 -4,-6 0.9992 3 4.0 ALTERNATIVE:2 ENSMUSG00000029673 Auts2 ENSMUST00000160071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029673 Auts2 ENSMUST00000162979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028973 Abcb8 ENSMUST00000138168 ENSMUSP00000119791 TRANSLATION protein_coding stop - 3 135.0 0.0 0.2 0.0 0.0 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000028973 Abcb8 ENSMUST00000115077 ENSMUSP00000110729 TRANSLATION protein_coding - CCDS19118.1 5 717.0 13.0 13.91 6.3 298.7 2.0 -4,0 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000028973 Abcb8 ENSMUST00000151535 ENSMUSP00000114767 TRANSLATION protein_coding start - 1 131.0 9.0 3.0 0.0 65.1 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000028973 Abcb8 ENSMUST00000136459 - NO_TRANSLATION retained_intron ENSMUSG00000028973 Abcb8 ENSMUST00000115074 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028973 Abcb8 ENSMUST00000127816 - NO_TRANSLATION retained_intron ENSMUSG00000028973 Abcb8 ENSMUST00000136414 - NO_TRANSLATION retained_intron ENSMUSG00000028973 Abcb8 ENSMUST00000073076 ENSMUSP00000072826 TRANSLATION protein_coding - CCDS19118.1 1 717.0 13.0 13.91 6.3 298.7 2.0 -4,0 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000028973 Abcb8 ENSMUST00000198166 ENSMUSP00000143193 TRANSLATION protein_coding start - 5 60.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000005107 Slc2a9 ENSMUST00000156076 - NO_TRANSLATION retained_intron ENSMUSG00000005107 Slc2a9 ENSMUST00000156272 ENSMUSP00000144374 TRANSLATION protein_coding stop - 5 158.0 0.0 3.07 0.0 35.5 9.0 -4,-6 0.0039 - -2.0 MINOR ENSMUSG00000005107 Slc2a9 ENSMUST00000129099 ENSMUSP00000122723 TRANSLATION protein_coding - CCDS51484.1 5 523.0 0.0 11.41 3.6 351.6 40.0 -4,-6 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000005107 Slc2a9 ENSMUST00000147664 ENSMUSP00000119586 TRANSLATION protein_coding stop - 2 144.0 0.0 3.33 0.0 82.1 12.0 -4,-6 0.0042 - -2.0 MINOR ENSMUSG00000005107 Slc2a9 ENSMUST00000143758 ENSMUSP00000118430 TRANSLATION protein_coding - CCDS51482.1 1 431.0 0.0 9.41 0.0 254.5 35.0 -4,-6 0.0151 1 1.998 MINOR ENSMUSG00000005107 Slc2a9 ENSMUST00000067886 ENSMUSP00000063352 TRANSLATION protein_coding - CCDS51483.1 1 538.0 0.0 11.41 1.2 351.6 40.0 -4,-6 0.4918 4 8.077 ALTERNATIVE:2 ENSMUSG00000005107 Slc2a9 ENSMUST00000005238 ENSMUSP00000005238 TRANSLATION protein_coding - CCDS19256.1 1 416.0 0.0 9.41 0.0 254.5 35.0 -4,-6 0.0151 1 1.998 MINOR ENSMUSG00000005107 Slc2a9 ENSMUST00000155634 ENSMUSP00000116354 TRANSLATION protein_coding - CCDS51484.1 5 523.0 0.0 11.41 3.6 351.6 40.0 -4,-6 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000005107 Slc2a9 ENSMUST00000122970 ENSMUSP00000117390 TRANSLATION nonsense_mediated_decay - - 1 281.0 0.0 5.83 0.0 170.6 21.0 -4,-6 0.0023 - -2.0 MINOR ENSMUSG00000005107 Slc2a9 ENSMUST00000067872 ENSMUSP00000066872 TRANSLATION protein_coding - CCDS51484.1 1 523.0 0.0 11.41 3.6 351.6 40.0 -4,-6 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000005107 Slc2a9 ENSMUST00000140462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005107 Slc2a9 ENSMUST00000144290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036435 Exoc1 ENSMUST00000143736 - NO_TRANSLATION retained_intron ENSMUSG00000036435 Exoc1 ENSMUST00000049469 ENSMUSP00000046719 TRANSLATION protein_coding - CCDS71608.1 1 879.0 0.0 1.62 18.5 704.5 0.0 -4,-5 0.9717 21 12.0 ALTERNATIVE:1 ENSMUSG00000036435 Exoc1 ENSMUST00000143489 - NO_TRANSLATION retained_intron ENSMUSG00000036435 Exoc1 ENSMUST00000202151 - NO_TRANSLATION retained_intron ENSMUSG00000036435 Exoc1 ENSMUST00000132807 - NO_TRANSLATION retained_intron ENSMUSG00000036435 Exoc1 ENSMUST00000134521 ENSMUSP00000121784 TRANSLATION protein_coding start/stop - 3 123.0 0.0 0.0 0.0 94.6 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000036435 Exoc1 ENSMUST00000141884 - NO_TRANSLATION retained_intron ENSMUSG00000036435 Exoc1 ENSMUST00000137018 - NO_TRANSLATION retained_intron ENSMUSG00000036435 Exoc1 ENSMUST00000131470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036435 Exoc1 ENSMUST00000150829 - NO_TRANSLATION retained_intron ENSMUSG00000036435 Exoc1 ENSMUST00000087133 ENSMUSP00000084373 TRANSLATION protein_coding - CCDS71607.1 1 894.0 0.0 1.62 18.5 701.8 0.0 -4,-5 0.9709 21 12.0 ALTERNATIVE:1 ENSMUSG00000036435 Exoc1 ENSMUST00000113493 ENSMUSP00000109121 TRANSLATION protein_coding - CCDS39117.1 1 901.0 0.0 1.62 18.5 701.8 0.0 -4,-5 1.0 22 12.0 PRINCIPAL:3 ENSMUSG00000094282 Cfap73 ENSMUST00000177908 ENSMUSP00000137554 TRANSLATION protein_coding - CCDS57376.1 5 306.0 0.0 4.75 3.2 77.3 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000029227 Fip1l1 ENSMUST00000121950 - NO_TRANSLATION retained_intron ENSMUSG00000029227 Fip1l1 ENSMUST00000113534 ENSMUSP00000109162 TRANSLATION protein_coding - - 1 508.0 0.0 1.5 0.0 87.2 0.0 -4,-5 0.0524 9 8.0 MINOR ENSMUSG00000029227 Fip1l1 ENSMUST00000120618 ENSMUSP00000113995 TRANSLATION protein_coding stop - 5 434.0 0.0 1.5 0.0 87.2 0.0 -4,-5 0.0497 8 -2.0 MINOR ENSMUSG00000029227 Fip1l1 ENSMUST00000201310 - NO_TRANSLATION retained_intron ENSMUSG00000029227 Fip1l1 ENSMUST00000125129 - NO_TRANSLATION retained_intron ENSMUSG00000029227 Fip1l1 ENSMUST00000113535 ENSMUSP00000109163 TRANSLATION protein_coding - CCDS51521.1 1 536.0 0.0 1.5 7.6 87.2 0.0 -4,-5 0.8785 9 10.64 ALTERNATIVE:1 ENSMUSG00000029227 Fip1l1 ENSMUST00000202499 - NO_TRANSLATION retained_intron ENSMUSG00000029227 Fip1l1 ENSMUST00000200979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029227 Fip1l1 ENSMUST00000200787 - NO_TRANSLATION retained_intron ENSMUSG00000029227 Fip1l1 ENSMUST00000135377 - NO_TRANSLATION retained_intron ENSMUSG00000029227 Fip1l1 ENSMUST00000113536 ENSMUSP00000109164 TRANSLATION protein_coding - CCDS51520.1 1 581.0 0.0 1.5 8.5 87.2 0.0 -4,-5 1.0 9 11.0 PRINCIPAL:4 ENSMUSG00000029227 Fip1l1 ENSMUST00000139697 - NO_TRANSLATION retained_intron ENSMUSG00000029227 Fip1l1 ENSMUST00000080164 ENSMUSP00000079059 TRANSLATION protein_coding - CCDS19346.1 1 545.0 0.0 1.5 7.6 87.2 0.0 -4,-5 0.8913 9 10.64 ALTERNATIVE:1 ENSMUSG00000038582 Pptc7 ENSMUST00000119015 ENSMUSP00000113194 TRANSLATION protein_coding - - 1 207.0 2.0 4.1 0.0 0.0 0.0 -4,-7 0.0388 3 5.703 MINOR ENSMUSG00000038582 Pptc7 ENSMUST00000053426 ENSMUSP00000051838 TRANSLATION protein_coding - CCDS39255.1 1 310.0 3.0 5.25 11.8 0.0 0.0 -3,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000045435 Tmem60 ENSMUST00000115259 ENSMUSP00000110914 TRANSLATION protein_coding - CCDS19101.1 1 133.0 0.0 0.8 36.9 51.5 0.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000045435 Tmem60 ENSMUST00000196723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028771 Ptpn12 ENSMUST00000140057 ENSMUSP00000117697 TRANSLATION nonsense_mediated_decay start - 5 33.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028771 Ptpn12 ENSMUST00000151813 ENSMUSP00000116989 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 1.08 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000028771 Ptpn12 ENSMUST00000030556 ENSMUSP00000030556 TRANSLATION protein_coding - CCDS19102.1 1 775.0 12.0 9.41 6.7 269.9 0.0 -4,-7 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000028771 Ptpn12 ENSMUST00000148711 - NO_TRANSLATION retained_intron ENSMUSG00000028771 Ptpn12 ENSMUST00000126853 - NO_TRANSLATION retained_intron ENSMUSG00000028771 Ptpn12 ENSMUST00000199774 ENSMUSP00000142550 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 1.08 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000028771 Ptpn12 ENSMUST00000151366 - NO_TRANSLATION retained_intron ENSMUSG00000029463 Fam216a ENSMUST00000031419 ENSMUSP00000031419 TRANSLATION protein_coding - CCDS39257.1 1 251.0 0.0 0.0 0.0 153.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000029127 Zbtb49 ENSMUST00000146859 ENSMUSP00000114955 TRANSLATION protein_coding start - 3 121.0 11.0 1.93 0.0 45.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029127 Zbtb49 ENSMUST00000094833 ENSMUSP00000092429 TRANSLATION protein_coding - CCDS19252.1 1 756.0 28.0 5.89 0.1 247.6 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000029127 Zbtb49 ENSMUST00000138820 ENSMUSP00000117913 TRANSLATION nonsense_mediated_decay - - 5 65.0 0.0 1.0 0.0 38.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029127 Zbtb49 ENSMUST00000123106 ENSMUSP00000144200 TRANSLATION nonsense_mediated_decay - - 5 51.0 0.0 1.0 0.0 36.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029127 Zbtb49 ENSMUST00000143436 ENSMUSP00000115513 TRANSLATION nonsense_mediated_decay - - 1 110.0 0.0 2.147 0.0 36.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029127 Zbtb49 ENSMUST00000136475 ENSMUSP00000117174 TRANSLATION nonsense_mediated_decay - - 5 444.0 4.0 2.749 0.0 117.4 0.0 -4,-6 0.0055 - -2.0 MINOR ENSMUSG00000029127 Zbtb49 ENSMUST00000137577 - NO_TRANSLATION retained_intron ENSMUSG00000029127 Zbtb49 ENSMUST00000124939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029127 Zbtb49 ENSMUST00000114113 ENSMUSP00000109748 TRANSLATION protein_coding - - 1 480.0 4.0 2.0 0.0 117.4 0.0 -4,-6 0.0055 - 0.0 MINOR ENSMUSG00000029127 Zbtb49 ENSMUST00000126267 ENSMUSP00000122109 TRANSLATION nonsense_mediated_decay - - 1 428.0 4.0 2.16 0.1 117.4 0.0 -4,-6 0.0055 - -2.0 MINOR ENSMUSG00000029127 Zbtb49 ENSMUST00000129161 ENSMUSP00000143893 TRANSLATION nonsense_mediated_decay start - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000037905 Bri3bp ENSMUST00000049040 ENSMUSP00000037609 TRANSLATION protein_coding - CCDS19686.1 1 253.0 0.0 0.2 0.4 220.8 0.0 3,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000037905 Bri3bp ENSMUST00000198811 ENSMUSP00000143530 TRANSLATION protein_coding start - 3 150.0 3.0 0.0 0.0 60.3 0.0 -4,-1 0.0012 1 -2.0 MINOR ENSMUSG00000040274 Cdk6 ENSMUST00000042410 ENSMUSP00000037925 TRANSLATION protein_coding - CCDS19062.1 1 326.0 18.0 7.25 26.8 231.9 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000040274 Cdk6 ENSMUST00000199156 ENSMUSP00000143564 TRANSLATION protein_coding stop - 5 29.0 4.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040274 Cdk6 ENSMUST00000197385 ENSMUSP00000143492 TRANSLATION protein_coding stop - 2 82.0 8.0 1.75 0.0 43.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040274 Cdk6 ENSMUST00000199396 - NO_TRANSLATION retained_intron ENSMUSG00000040274 Cdk6 ENSMUST00000197607 ENSMUSP00000142796 TRANSLATION protein_coding stop - 3 23.0 2.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040274 Cdk6 ENSMUST00000165117 ENSMUSP00000126024 TRANSLATION protein_coding - CCDS19062.1 1 326.0 18.0 7.25 26.8 231.9 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000079156 Smok3b ENSMUST00000166206 ENSMUSP00000129450 TRANSLATION protein_coding - CCDS39339.1 5 504.0 18.0 0.5 0.0 243.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000079156 Smok3b ENSMUST00000100537 ENSMUSP00000098105 TRANSLATION protein_coding - CCDS39339.1 1 504.0 18.0 0.5 0.0 243.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000029570 Lfng ENSMUST00000200626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029570 Lfng ENSMUST00000031555 ENSMUSP00000031555 TRANSLATION protein_coding - CCDS19821.1 1 378.0 10.0 6.25 4.7 401.7 0.0 2,-3 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000029570 Lfng ENSMUST00000199848 - NO_TRANSLATION retained_intron ENSMUSG00000072941 Sod3 ENSMUST00000101208 ENSMUSP00000098768 TRANSLATION protein_coding - CCDS19283.1 1 251.0 8.0 1.0 0.0 107.0 0.0 1,-2 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000029503 P2rx2 ENSMUST00000112478 ENSMUSP00000108097 TRANSLATION protein_coding - CCDS51608.1 1 416.0 0.0 9.9 3.9 490.5 3.0 -4,0 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000029503 P2rx2 ENSMUST00000058016 ENSMUSP00000054233 TRANSLATION protein_coding - CCDS80363.1 1 497.0 0.0 9.4 0.1 474.9 2.0 -4,0 0.1113 2 4.998 MINOR ENSMUSG00000029503 P2rx2 ENSMUST00000199165 - NO_TRANSLATION retained_intron ENSMUSG00000029503 P2rx2 ENSMUST00000195985 ENSMUSP00000143047 TRANSLATION protein_coding - CCDS51607.1 1 485.0 0.0 9.9 0.3 490.1 3.0 -4,0 0.3136 2 8.0 ALTERNATIVE:2 ENSMUSG00000029503 P2rx2 ENSMUST00000200214 ENSMUSP00000142567 TRANSLATION protein_coding - CCDS80361.1 1 398.0 0.0 8.35 0.1 408.4 2.0 -4,-5 0.0391 2 2.898 MINOR ENSMUSG00000029503 P2rx2 ENSMUST00000200037 ENSMUSP00000143554 TRANSLATION protein_coding - CCDS80362.1 1 395.0 0.0 9.9 1.0 488.3 3.0 -4,0 0.4598 2 8.0 MINOR ENSMUSG00000082361 Btc ENSMUST00000201090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000082361 Btc ENSMUST00000201252 - NO_TRANSLATION retained_intron ENSMUSG00000082361 Btc ENSMUST00000200860 ENSMUSP00000143920 TRANSLATION nonsense_mediated_decay - - 1 84.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0014 - -2.0 MINOR ENSMUSG00000082361 Btc ENSMUST00000121044 ENSMUSP00000112765 TRANSLATION protein_coding - CCDS19422.1 1 177.0 0.0 3.3 7.3 23.4 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000070677 Pramel48 ENSMUST00000094593 ENSMUSP00000092174 TRANSLATION protein_coding - CCDS51561.1 1 481.0 2.0 2.2 0.4 0.0 0.0 -4,-6 0.9626 - 8.0 PRINCIPAL:1 ENSMUSG00000070677 Pramel48 ENSMUST00000202481 ENSMUSP00000143927 TRANSLATION protein_coding - CCDS51561.1 1 481.0 2.0 2.2 0.4 0.0 0.0 -4,-6 0.9626 - 8.0 PRINCIPAL:1 ENSMUSG00000059518 Znhit1 ENSMUST00000111090 ENSMUSP00000106719 TRANSLATION protein_coding - - 2 147.0 7.0 1.0 0.0 38.9 0.0 -4,-2 0.03 - 15.762 MINOR ENSMUSG00000059518 Znhit1 ENSMUST00000034953 ENSMUSP00000034953 TRANSLATION protein_coding start - 2 147.0 7.0 1.0 1.5 38.9 0.0 -4,-7 0.1311 - -2.0 MINOR ENSMUSG00000059518 Znhit1 ENSMUST00000085941 ENSMUSP00000083103 TRANSLATION protein_coding - CCDS80438.1 1 154.0 8.0 1.33 27.9 38.9 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000059518 Znhit1 ENSMUST00000137272 ENSMUSP00000120331 TRANSLATION protein_coding stop - 5 77.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000059518 Znhit1 ENSMUST00000111091 ENSMUSP00000106720 TRANSLATION protein_coding - CCDS80437.1 5 158.0 7.0 1.33 3.0 38.9 0.0 -4,-6 0.3726 - 17.546 MINOR ENSMUSG00000059518 Znhit1 ENSMUST00000156963 ENSMUSP00000115929 TRANSLATION protein_coding - CCDS39329.1 1 153.0 8.0 1.33 3.3 38.9 0.0 -4,-2 0.4669 - 18.344 MINOR ENSMUSG00000038828 Tmem214 ENSMUST00000202774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038828 Tmem214 ENSMUST00000202951 - NO_TRANSLATION retained_intron ENSMUSG00000038828 Tmem214 ENSMUST00000201203 ENSMUSP00000144615 TRANSLATION protein_coding - CCDS19164.1 1 687.0 0.0 14.0 9.9 765.2 0.0 -4,-2 1.0 24 15.0 PRINCIPAL:1 ENSMUSG00000038828 Tmem214 ENSMUST00000202050 - NO_TRANSLATION retained_intron ENSMUSG00000038828 Tmem214 ENSMUST00000201234 - NO_TRANSLATION retained_intron ENSMUSG00000038828 Tmem214 ENSMUST00000202008 - NO_TRANSLATION retained_intron ENSMUSG00000038828 Tmem214 ENSMUST00000114716 ENSMUSP00000110364 TRANSLATION protein_coding - - 5 642.0 0.0 13.0 1.0 676.0 0.0 -4,-2 0.0511 22 4.65 MINOR ENSMUSG00000032898 Fbxo21 ENSMUST00000201427 - NO_TRANSLATION retained_intron ENSMUSG00000032898 Fbxo21 ENSMUST00000200780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032898 Fbxo21 ENSMUST00000202447 ENSMUSP00000143873 TRANSLATION protein_coding - CCDS19607.1 1 627.0 0.0 0.0 8.5 236.6 0.0 -4,-6 1.0 11 5.0 PRINCIPAL:4 ENSMUSG00000032898 Fbxo21 ENSMUST00000201611 ENSMUSP00000144071 TRANSLATION protein_coding start - 5 504.0 0.0 0.0 0.0 209.5 0.0 -4,-2 0.0063 8 -2.0 MINOR ENSMUSG00000032898 Fbxo21 ENSMUST00000035579 ENSMUSP00000035506 TRANSLATION protein_coding - CCDS84947.1 1 620.0 0.0 0.0 8.5 236.6 0.0 -4,-6 0.9622 11 5.0 ALTERNATIVE:1 ENSMUSG00000032898 Fbxo21 ENSMUST00000201889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050552 Lamtor4 ENSMUST00000160157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050552 Lamtor4 ENSMUST00000062067 ENSMUSP00000056693 TRANSLATION protein_coding - CCDS39342.1 1 99.0 0.0 2.75 26.8 0.0 0.0 -4,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000028953 Abcf2 ENSMUST00000030795 ENSMUSP00000030795 TRANSLATION protein_coding - CCDS19125.1 1 628.0 17.0 11.75 13.9 159.4 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000025532 Crcp ENSMUST00000156729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025532 Crcp ENSMUST00000202756 ENSMUSP00000143969 TRANSLATION protein_coding - - 2 97.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 - 3.0 MINOR ENSMUSG00000025532 Crcp ENSMUST00000201777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025532 Crcp ENSMUST00000026608 ENSMUSP00000026608 TRANSLATION protein_coding - CCDS19706.1 1 148.0 0.0 4.0 22.8 104.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000025532 Crcp ENSMUST00000202691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025532 Crcp ENSMUST00000202163 ENSMUSP00000144624 TRANSLATION protein_coding - - 2 72.0 0.0 1.5 0.0 22.9 0.0 -4,-5 0.0 - 2.082 MINOR ENSMUSG00000043410 Hfm1 ENSMUST00000200249 ENSMUSP00000142727 TRANSLATION protein_coding stop - 1 410.0 12.0 2.65 0.0 64.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043410 Hfm1 ENSMUST00000117588 ENSMUSP00000112590 TRANSLATION protein_coding - CCDS51582.1 5 1434.0 12.0 9.958 2.9 283.8 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000043410 Hfm1 ENSMUST00000134292 - NO_TRANSLATION retained_intron ENSMUSG00000043410 Hfm1 ENSMUST00000148686 ENSMUSP00000120112 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043410 Hfm1 ENSMUST00000155171 ENSMUSP00000118674 TRANSLATION protein_coding start - 5 626.0 0.0 2.378 0.0 138.4 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000043410 Hfm1 ENSMUST00000148495 ENSMUSP00000122169 TRANSLATION nonsense_mediated_decay start - 5 49.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000043410 Hfm1 ENSMUST00000112690 ENSMUSP00000108310 TRANSLATION protein_coding - CCDS51582.1 5 1434.0 12.0 9.958 2.9 283.8 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000074817 Papolb ENSMUST00000099400 ENSMUSP00000100595 TRANSLATION protein_coding - CCDS39362.1 - 642.0 4.0 1.0 4.5 506.4 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000038676 Ucn ENSMUST00000201184 ENSMUSP00000144390 TRANSLATION protein_coding - CCDS19174.1 1 122.0 0.0 0.6 6.5 64.5 0.0 2,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038676 Ucn ENSMUST00000043475 ENSMUSP00000035321 TRANSLATION protein_coding - CCDS19174.1 1 122.0 0.0 0.6 6.5 64.5 0.0 2,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000037720 Tmem33 ENSMUST00000162074 ENSMUSP00000123834 TRANSLATION nonsense_mediated_decay - - 5 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037720 Tmem33 ENSMUST00000037918 ENSMUSP00000042852 TRANSLATION protein_coding - CCDS19317.1 1 247.0 0.0 5.75 34.9 321.9 4.0 -4,-7 1.0 5 12.0 PRINCIPAL:4 ENSMUSG00000037720 Tmem33 ENSMUST00000163028 - NO_TRANSLATION retained_intron ENSMUSG00000037720 Tmem33 ENSMUST00000202324 - NO_TRANSLATION retained_intron ENSMUSG00000037720 Tmem33 ENSMUST00000160352 ENSMUSP00000124766 TRANSLATION protein_coding - CCDS51511.1 1 246.0 0.0 5.75 34.9 321.9 4.0 -4,-7 0.9907 5 12.0 ALTERNATIVE:1 ENSMUSG00000037720 Tmem33 ENSMUST00000201979 ENSMUSP00000144531 TRANSLATION nonsense_mediated_decay - - 5 64.0 0.0 1.0 0.0 29.2 2.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000037720 Tmem33 ENSMUST00000162543 ENSMUSP00000124765 TRANSLATION protein_coding - - 1 126.0 0.0 2.0 0.0 127.8 1.0 -4,-7 0.0 2 0.0 MINOR ENSMUSG00000037720 Tmem33 ENSMUST00000161369 ENSMUSP00000124390 TRANSLATION protein_coding - CCDS19317.1 1 247.0 0.0 5.75 34.9 321.9 4.0 -4,-7 1.0 5 12.0 PRINCIPAL:4 ENSMUSG00000037720 Tmem33 ENSMUST00000161233 ENSMUSP00000124623 TRANSLATION protein_coding stop - 3 42.0 0.0 1.0 0.0 33.0 0.0 0,-4 0.0028 1 -2.0 MINOR ENSMUSG00000028926 Cdk14 ENSMUST00000115450 ENSMUSP00000111110 TRANSLATION protein_coding - CCDS80203.1 1 423.0 20.0 7.6 28.0 229.4 0.0 -4,-5 0.9279 8 15.6 ALTERNATIVE:1 ENSMUSG00000028926 Cdk14 ENSMUST00000134867 - NO_TRANSLATION retained_intron ENSMUSG00000028926 Cdk14 ENSMUST00000167567 ENSMUSP00000130895 TRANSLATION protein_coding stop - 3 167.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0019 2 -2.0 MINOR ENSMUSG00000028926 Cdk14 ENSMUST00000115452 ENSMUSP00000111112 TRANSLATION protein_coding - - 5 451.0 20.0 7.6 2.0 229.4 0.0 -4,-7 0.2732 8 12.132 MINOR ENSMUSG00000028926 Cdk14 ENSMUST00000171119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028926 Cdk14 ENSMUST00000131392 ENSMUSP00000114741 TRANSLATION protein_coding stop - 5 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000028926 Cdk14 ENSMUST00000132390 - NO_TRANSLATION retained_intron ENSMUSG00000028926 Cdk14 ENSMUST00000137554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028926 Cdk14 ENSMUST00000156660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028926 Cdk14 ENSMUST00000030763 ENSMUSP00000030763 TRANSLATION protein_coding - CCDS19073.1 1 469.0 20.0 7.6 31.0 229.4 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:3 ENSMUSG00000028926 Cdk14 ENSMUST00000199623 - NO_TRANSLATION retained_intron ENSMUSG00000028926 Cdk14 ENSMUST00000133465 - NO_TRANSLATION retained_intron ENSMUSG00000028926 Cdk14 ENSMUST00000153331 - NO_TRANSLATION retained_intron ENSMUSG00000028926 Cdk14 ENSMUST00000115451 ENSMUSP00000111111 TRANSLATION protein_coding - CCDS80203.1 1 423.0 20.0 7.6 28.0 229.4 0.0 -4,-5 0.9279 8 15.6 ALTERNATIVE:1 ENSMUSG00000028926 Cdk14 ENSMUST00000200637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029233 Srd5a3 ENSMUST00000124217 - NO_TRANSLATION retained_intron ENSMUSG00000029233 Srd5a3 ENSMUST00000113507 ENSMUSP00000109135 TRANSLATION protein_coding - - 1 206.0 0.0 1.278 0.0 73.6 6.0 0,-3 0.0641 2 10.266 MINOR ENSMUSG00000029233 Srd5a3 ENSMUST00000152642 ENSMUSP00000115297 TRANSLATION protein_coding stop - 5 10.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029233 Srd5a3 ENSMUST00000127278 ENSMUSP00000116801 TRANSLATION protein_coding stop - 3 74.0 0.0 0.198 0.0 0.0 4.0 0,-3 0.0034 - -2.0 MINOR ENSMUSG00000029233 Srd5a3 ENSMUST00000138699 - NO_TRANSLATION retained_intron ENSMUSG00000029233 Srd5a3 ENSMUST00000031143 ENSMUSP00000031143 TRANSLATION protein_coding - CCDS19358.1 1 330.0 0.0 1.798 0.4 73.6 7.0 1,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000029233 Srd5a3 ENSMUST00000113506 ENSMUSP00000109134 TRANSLATION protein_coding - - 5 206.0 0.0 1.278 0.0 73.6 6.0 0,-3 0.0641 2 10.266 MINOR ENSMUSG00000029233 Srd5a3 ENSMUST00000149222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029245 Epha5 ENSMUST00000113399 ENSMUSP00000109026 TRANSLATION protein_coding - - 5 1006.0 18.0 11.964 1.0 777.0 2.0 -1,-4 0.244 10 11.198 MINOR ENSMUSG00000029245 Epha5 ENSMUST00000113406 ENSMUSP00000109033 TRANSLATION protein_coding - - 5 1017.0 18.0 12.364 4.6 828.4 2.0 -1,-4 0.9135 10 15.148 ALTERNATIVE:1 ENSMUSG00000029245 Epha5 ENSMUST00000113403 ENSMUSP00000109030 TRANSLATION protein_coding - - 5 1040.0 18.0 12.764 4.7 819.7 2.0 -1,-4 1.0 10 15.4 PRINCIPAL:4 ENSMUSG00000029245 Epha5 ENSMUST00000136775 - NO_TRANSLATION retained_intron ENSMUSG00000029245 Epha5 ENSMUST00000113401 ENSMUSP00000109028 TRANSLATION protein_coding - - 1 819.0 18.0 9.564 2.0 733.8 2.0 -1,-4 0.2061 10 7.94 MINOR ENSMUSG00000029245 Epha5 ENSMUST00000053733 ENSMUSP00000060646 TRANSLATION protein_coding - CCDS19376.1 1 876.0 18.0 10.764 3.0 767.8 2.0 -1,-4 0.3481 10 10.48 MINOR ENSMUSG00000029245 Epha5 ENSMUST00000155469 - NO_TRANSLATION retained_intron ENSMUSG00000029245 Epha5 ENSMUST00000152573 - NO_TRANSLATION retained_intron ENSMUSG00000029245 Epha5 ENSMUST00000113398 ENSMUSP00000109025 TRANSLATION protein_coding - - 5 894.0 18.0 10.964 2.1 725.1 2.0 -1,-4 0.2435 11 9.794 MINOR ENSMUSG00000029245 Epha5 ENSMUST00000200076 - NO_TRANSLATION retained_intron ENSMUSG00000029245 Epha5 ENSMUST00000154804 - NO_TRANSLATION retained_intron ENSMUSG00000029221 Slc30a9 ENSMUST00000161169 - NO_TRANSLATION retained_intron ENSMUSG00000029221 Slc30a9 ENSMUST00000202521 ENSMUSP00000144067 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.0 0.0 0.0 0.0 -2,1 0.0004 - -2.0 MINOR ENSMUSG00000029221 Slc30a9 ENSMUST00000200734 ENSMUSP00000144546 TRANSLATION nonsense_mediated_decay start - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029221 Slc30a9 ENSMUST00000159907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029221 Slc30a9 ENSMUST00000113676 ENSMUSP00000109306 TRANSLATION protein_coding - CCDS80294.1 1 547.0 0.0 4.858 0.1 109.6 5.0 -2,2 0.3364 11 12.0 MINOR ENSMUSG00000029221 Slc30a9 ENSMUST00000201173 - NO_TRANSLATION retained_intron ENSMUSG00000029221 Slc30a9 ENSMUST00000202770 ENSMUSP00000144579 TRANSLATION protein_coding start/stop - 3 142.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000029221 Slc30a9 ENSMUST00000162372 ENSMUSP00000124047 TRANSLATION protein_coding - CCDS39103.1 1 567.0 0.0 4.858 10.3 109.6 5.0 -2,2 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000025538 Sumf2 ENSMUST00000137357 ENSMUSP00000144155 TRANSLATION nonsense_mediated_decay - - 1 159.0 0.0 2.6 0.0 75.0 0.0 4,-1 0.001 3 -2.0 MINOR ENSMUSG00000025538 Sumf2 ENSMUST00000201874 ENSMUSP00000144230 TRANSLATION protein_coding start/stop - 3 135.0 0.0 2.5 0.0 79.1 0.0 4,-1 0.0 2 -2.0 MINOR ENSMUSG00000025538 Sumf2 ENSMUST00000201029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025538 Sumf2 ENSMUST00000171300 ENSMUSP00000126036 TRANSLATION protein_coding - CCDS19700.1 1 308.0 9.0 7.0 0.1 284.6 0.0 2,-1 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000025538 Sumf2 ENSMUST00000122826 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025538 Sumf2 ENSMUST00000153063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042002 Foxn4 ENSMUST00000044790 ENSMUSP00000047951 TRANSLATION protein_coding - CCDS19562.1 1 521.0 0.0 1.8 6.5 107.5 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042002 Foxn4 ENSMUST00000144050 ENSMUSP00000126361 TRANSLATION protein_coding stop - 5 141.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000042002 Foxn4 ENSMUST00000129530 ENSMUSP00000126256 TRANSLATION nonsense_mediated_decay start - 5 136.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042002 Foxn4 ENSMUST00000147953 - NO_TRANSLATION retained_intron ENSMUSG00000029556 Hnf1a ENSMUST00000176550 ENSMUSP00000135678 TRANSLATION nonsense_mediated_decay - - 5 247.0 6.0 2.3746 0.0 188.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029556 Hnf1a ENSMUST00000176911 ENSMUSP00000135539 TRANSLATION nonsense_mediated_decay - - 5 119.0 6.0 0.632 0.0 48.3 0.0 -4,-7 0.0005 - -2.0 MINOR ENSMUSG00000029556 Hnf1a ENSMUST00000031535 ENSMUSP00000031535 TRANSLATION protein_coding - CCDS19577.1 1 628.0 6.0 3.335 10.0 644.7 0.0 -4,-7 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000029556 Hnf1a ENSMUST00000184027 - NO_TRANSLATION retained_intron ENSMUSG00000034310 Tmem132d ENSMUST00000044441 ENSMUSP00000043633 TRANSLATION protein_coding - CCDS39287.1 1 1097.0 0.0 0.0 8.9 801.5 0.0 0,-3 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000034310 Tmem132d ENSMUST00000200316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034310 Tmem132d ENSMUST00000200136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029560 Snx8 ENSMUST00000031539 ENSMUSP00000031539 TRANSLATION protein_coding - CCDS39356.1 1 459.0 0.0 2.975 7.1 73.9 0.0 -4,-6 0.9813 10 8.346 PRINCIPAL:3 ENSMUSG00000029560 Snx8 ENSMUST00000196130 ENSMUSP00000142390 TRANSLATION protein_coding - - 1 411.0 0.0 2.975 8.8 73.9 0.0 -4,-7 1.0 9 9.0 ALTERNATIVE:1 ENSMUSG00000029560 Snx8 ENSMUST00000196020 ENSMUSP00000142491 TRANSLATION protein_coding stop - 3 75.0 0.0 1.675 0.0 36.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000029560 Snx8 ENSMUST00000196566 ENSMUSP00000142556 TRANSLATION protein_coding - - 5 411.0 0.0 2.975 8.8 73.9 0.0 -4,-7 1.0 9 9.0 ALTERNATIVE:1 ENSMUSG00000029560 Snx8 ENSMUST00000198945 ENSMUSP00000142866 TRANSLATION protein_coding stop - 5 176.0 0.0 2.475 0.0 76.5 0.0 -4,-5 0.0034 4 -2.0 MINOR ENSMUSG00000029560 Snx8 ENSMUST00000197880 ENSMUSP00000142394 TRANSLATION nonsense_mediated_decay - - 2 88.0 0.0 1.3 0.0 45.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000029560 Snx8 ENSMUST00000195982 - NO_TRANSLATION retained_intron ENSMUSG00000029337 Fgf5 ENSMUST00000031280 ENSMUSP00000031280 TRANSLATION protein_coding - CCDS19455.1 1 264.0 9.0 2.5 0.1 145.8 0.0 3,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000029337 Fgf5 ENSMUST00000200059 ENSMUSP00000142420 TRANSLATION protein_coding - CCDS80344.1 1 121.0 1.0 0.5 0.1 22.8 0.0 3,-1 0.0506 - 1.866 MINOR ENSMUSG00000029189 Sel1l3 ENSMUST00000196550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029189 Sel1l3 ENSMUST00000199919 - NO_TRANSLATION retained_intron ENSMUSG00000029189 Sel1l3 ENSMUST00000196435 - NO_TRANSLATION retained_intron ENSMUSG00000029189 Sel1l3 ENSMUST00000031090 ENSMUSP00000031090 TRANSLATION protein_coding - CCDS51501.1 1 1137.0 0.0 3.52 5.7 78.3 0.0 -4,0 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000029189 Sel1l3 ENSMUST00000196516 - NO_TRANSLATION retained_intron ENSMUSG00000039754 Alkbh4 ENSMUST00000125923 ENSMUSP00000117167 TRANSLATION nonsense_mediated_decay - - 2 73.0 0.0 0.48 0.0 0.0 0.0 -4,-5 0.0036 - -2.0 MINOR ENSMUSG00000039754 Alkbh4 ENSMUST00000041100 ENSMUSP00000040403 TRANSLATION protein_coding - CCDS84973.1 1 300.0 3.0 2.53 1.8 0.0 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000039754 Alkbh4 ENSMUST00000136634 ENSMUSP00000119887 TRANSLATION protein_coding stop - 1 131.0 2.0 1.55 0.0 0.0 0.0 -4,-5 0.0047 1 -2.0 MINOR ENSMUSG00000039754 Alkbh4 ENSMUST00000143229 ENSMUSP00000116402 TRANSLATION protein_coding start - 2 109.0 0.0 1.33 0.0 0.0 0.0 -4,-6 0.0069 - -2.0 MINOR ENSMUSG00000039754 Alkbh4 ENSMUST00000100568 ENSMUSP00000098134 TRANSLATION protein_coding - CCDS19753.1 1 215.0 3.0 1.95 0.3 0.0 0.0 -4,-5 0.1187 3 7.626 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000120144 ENSMUSP00000113619 TRANSLATION protein_coding - - 5 1274.0 0.0 11.54 2.1 1075.5 10.0 4,-1 0.3062 32 7.736 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000117253 ENSMUSP00000112470 TRANSLATION protein_coding - - 1 1268.0 0.0 11.54 0.0 1061.4 10.0 4,-1 0.2631 31 7.336 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000117985 ENSMUSP00000113950 TRANSLATION protein_coding - - 5 1512.0 0.0 11.672 4.4 1376.0 10.0 4,-1 0.784 37 9.236 ALTERNATIVE:2 ENSMUSG00000037605 Adgrl3 ENSMUST00000132375 ENSMUSP00000117211 TRANSLATION nonsense_mediated_decay - - 1 67.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0 - -2.0 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000126227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037605 Adgrl3 ENSMUST00000132634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037605 Adgrl3 ENSMUST00000201803 - NO_TRANSLATION retained_intron ENSMUSG00000037605 Adgrl3 ENSMUST00000149280 - NO_TRANSLATION retained_intron ENSMUSG00000037605 Adgrl3 ENSMUST00000201055 - NO_TRANSLATION retained_intron ENSMUSG00000037605 Adgrl3 ENSMUST00000122037 ENSMUSP00000113374 TRANSLATION protein_coding - CCDS84895.1 5 1460.0 0.0 11.54 2.2 1267.2 10.0 4,-1 0.6415 37 7.772 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000119788 ENSMUSP00000114067 TRANSLATION protein_coding - - 5 1550.0 0.0 11.672 2.1 1264.6 10.0 3,-1 0.4444 40 8.0 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000117407 ENSMUSP00000112388 TRANSLATION protein_coding - - 5 1342.0 0.0 11.54 2.5 1075.5 10.0 3,-1 0.3969 35 7.882 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000072521 ENSMUSP00000072336 TRANSLATION protein_coding - CCDS39122.1 5 1543.0 0.0 11.672 5.4 1263.2 10.0 3,-1 0.8943 40 9.2 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000120128 ENSMUSP00000113208 TRANSLATION protein_coding - - 5 1240.0 0.0 11.672 3.0 976.1 10.0 4,-1 0.4025 32 8.328 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000118034 ENSMUSP00000113534 TRANSLATION protein_coding - - 5 1503.0 0.0 11.54 2.0 1380.4 10.0 4,-1 0.5083 37 8.1 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000148830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037605 Adgrl3 ENSMUST00000119385 ENSMUSP00000113243 TRANSLATION protein_coding - CCDS84893.1 5 1299.0 0.0 11.54 4.2 980.5 10.0 3,-1 0.5866 35 8.5 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000148923 - NO_TRANSLATION retained_intron ENSMUSG00000037605 Adgrl3 ENSMUST00000140356 - NO_TRANSLATION retained_intron ENSMUSG00000037605 Adgrl3 ENSMUST00000147226 - NO_TRANSLATION retained_intron ENSMUSG00000037605 Adgrl3 ENSMUST00000121707 ENSMUSP00000112823 TRANSLATION protein_coding - - 5 1534.0 0.0 11.54 5.3 1267.6 10.0 3,-1 0.7887 40 8.9 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000118442 ENSMUSP00000113836 TRANSLATION protein_coding - CCDS84891.1 5 1308.0 0.0 11.672 4.2 976.1 10.0 3,-1 0.5312 35 8.764 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000120673 ENSMUSP00000113482 TRANSLATION protein_coding - - 5 1580.0 0.0 11.672 4.2 1376.0 10.0 3,-1 0.6983 40 9.164 ALTERNATIVE:2 ENSMUSG00000037605 Adgrl3 ENSMUST00000121641 ENSMUSP00000113694 TRANSLATION protein_coding - - 5 1571.0 0.0 11.54 4.2 1380.4 10.0 3,-1 0.7817 40 8.9 PRINCIPAL:4 ENSMUSG00000037605 Adgrl3 ENSMUST00000118078 ENSMUSP00000112731 TRANSLATION protein_coding - - 5 1231.0 0.0 11.54 3.1 980.5 10.0 4,-1 0.4577 32 8.1 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000120292 ENSMUSP00000112548 TRANSLATION protein_coding - - 5 1283.0 0.0 11.672 3.0 1071.1 10.0 4,-1 0.4134 32 8.328 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000200930 - NO_TRANSLATION retained_intron ENSMUSG00000037605 Adgrl3 ENSMUST00000127046 - NO_TRANSLATION retained_intron ENSMUSG00000037605 Adgrl3 ENSMUST00000120445 ENSMUSP00000113249 TRANSLATION protein_coding - - 5 1351.0 0.0 11.672 3.2 1071.1 10.0 3,-1 0.4357 35 8.4 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000134597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037605 Adgrl3 ENSMUST00000124117 ENSMUSP00000118882 TRANSLATION protein_coding start - 5 873.0 0.0 6.31 0.0 864.7 10.0 -4,-6 0.0583 14 -2.0 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000153264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037605 Adgrl3 ENSMUST00000122356 ENSMUSP00000113600 TRANSLATION protein_coding - CCDS84894.1 5 1528.0 0.0 11.54 6.5 1267.2 10.0 3,-1 1.0 40 9.336 MINOR ENSMUSG00000037605 Adgrl3 ENSMUST00000136104 - NO_TRANSLATION retained_intron ENSMUSG00000042240 Crybb2 ENSMUST00000144833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042240 Crybb2 ENSMUST00000112336 ENSMUSP00000107955 TRANSLATION protein_coding - CCDS19546.1 1 205.0 9.0 4.4 25.8 198.4 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000042240 Crybb2 ENSMUST00000199639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042240 Crybb2 ENSMUST00000031295 ENSMUSP00000031295 TRANSLATION protein_coding - CCDS19546.1 1 205.0 9.0 4.4 25.8 198.4 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000042240 Crybb2 ENSMUST00000137485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029094 Afap1 ENSMUST00000201482 - NO_TRANSLATION retained_intron ENSMUSG00000029094 Afap1 ENSMUST00000141824 ENSMUSP00000119364 TRANSLATION protein_coding stop - 2 627.0 0.0 1.7 0.0 90.2 0.0 -4,-7 0.0613 6 -2.0 MINOR ENSMUSG00000029094 Afap1 ENSMUST00000064571 ENSMUSP00000067779 TRANSLATION protein_coding - CCDS19236.1 1 731.0 0.0 1.7 15.1 90.2 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000029094 Afap1 ENSMUST00000212374 ENSMUSP00000148414 TRANSLATION protein_coding start/stop - 3 167.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029094 Afap1 ENSMUST00000146300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090015 Gm15446 ENSMUST00000249393 ENSMUSP00000159750 TRANSLATION protein_coding - - - 521.0 66.0 2.25 0.3 316.4 0.0 -4,-5 0.1325 - 13.536 MINOR ENSMUSG00000090015 Gm15446 ENSMUST00000170826 - NO_TRANSLATION retained_intron ENSMUSG00000090015 Gm15446 ENSMUST00000146564 - NO_TRANSLATION retained_intron ENSMUSG00000090015 Gm15446 ENSMUST00000249391 ENSMUSP00000159748 TRANSLATION protein_coding - - - 521.0 66.0 2.25 0.3 316.4 0.0 -4,-5 0.1325 - 13.536 MINOR ENSMUSG00000090015 Gm15446 ENSMUST00000112544 ENSMUSP00000108163 TRANSLATION protein_coding - - 2 553.0 66.0 2.25 0.3 390.8 0.0 -4,-5 0.8072 - 18.0 PRINCIPAL:1 ENSMUSG00000090015 Gm15446 ENSMUST00000249390 ENSMUSP00000159747 TRANSLATION protein_coding - - - 521.0 66.0 2.25 0.3 316.4 0.0 -4,-5 0.1325 - 13.536 MINOR ENSMUSG00000090015 Gm15446 ENSMUST00000249392 ENSMUSP00000159749 TRANSLATION protein_coding - - - 59.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - 3.336 MINOR ENSMUSG00000029591 Ung ENSMUST00000031587 ENSMUSP00000031587 TRANSLATION protein_coding - CCDS39221.1 1 306.0 9.0 6.25 10.6 86.8 0.0 -4,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000029591 Ung ENSMUST00000200479 - NO_TRANSLATION retained_intron ENSMUSG00000029591 Ung ENSMUST00000112275 ENSMUSP00000107894 TRANSLATION protein_coding - - 1 199.0 9.0 5.25 0.1 86.8 0.0 -4,-5 0.0261 - 16.002 MINOR ENSMUSG00000029591 Ung ENSMUST00000102584 ENSMUSP00000099644 TRANSLATION protein_coding - CCDS19560.1 1 295.0 9.0 6.25 2.0 86.8 0.0 -4,0 0.4136 - 18.312 MINOR ENSMUSG00000029591 Ung ENSMUST00000143455 ENSMUSP00000142484 TRANSLATION nonsense_mediated_decay - - 5 132.0 0.0 2.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000029591 Ung ENSMUST00000137402 ENSMUSP00000114140 TRANSLATION protein_coding stop - 5 185.0 9.0 4.5 0.0 79.1 0.0 -4,-5 0.0021 - -2.0 MINOR ENSMUSG00000028949 Smarcd3 ENSMUST00000030791 ENSMUSP00000030791 TRANSLATION protein_coding - CCDS19126.1 1 483.0 0.0 4.47 20.2 73.3 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000028949 Smarcd3 ENSMUST00000199393 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028949 Smarcd3 ENSMUST00000195943 ENSMUSP00000143437 TRANSLATION protein_coding - - 5 454.0 0.0 4.47 0.0 73.3 0.0 -4,-7 0.0448 6 12.0 MINOR ENSMUSG00000028949 Smarcd3 ENSMUST00000144995 - NO_TRANSLATION retained_intron ENSMUSG00000028949 Smarcd3 ENSMUST00000140744 - NO_TRANSLATION retained_intron ENSMUSG00000028949 Smarcd3 ENSMUST00000143501 - NO_TRANSLATION retained_intron ENSMUSG00000028949 Smarcd3 ENSMUST00000144518 - NO_TRANSLATION retained_intron ENSMUSG00000028949 Smarcd3 ENSMUST00000147857 - NO_TRANSLATION retained_intron ENSMUSG00000028949 Smarcd3 ENSMUST00000145565 - NO_TRANSLATION retained_intron ENSMUSG00000034663 Bmp2k ENSMUST00000112974 ENSMUSP00000108598 TRANSLATION protein_coding - - 1 649.0 20.0 8.1 0.0 145.9 0.0 -4,-7 0.055 11 12.0 MINOR ENSMUSG00000034663 Bmp2k ENSMUST00000035635 ENSMUSP00000037970 TRANSLATION protein_coding - CCDS39175.1 1 1138.0 20.0 8.1 0.0 522.2 0.0 -4,-7 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000037795 N4bp2 ENSMUST00000202411 - NO_TRANSLATION retained_intron ENSMUSG00000037795 N4bp2 ENSMUST00000201503 - NO_TRANSLATION retained_intron ENSMUSG00000037795 N4bp2 ENSMUST00000201489 ENSMUSP00000143807 TRANSLATION protein_coding - CCDS19310.1 5 1678.0 9.0 5.6 0.0 116.6 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000037795 N4bp2 ENSMUST00000201615 ENSMUSP00000144278 TRANSLATION protein_coding stop - 1 1498.0 9.0 3.1 0.0 47.8 0.0 -4,-5 0.0325 18 -2.0 MINOR ENSMUSG00000037795 N4bp2 ENSMUST00000201044 - NO_TRANSLATION retained_intron ENSMUSG00000037795 N4bp2 ENSMUST00000202934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037795 N4bp2 ENSMUST00000202817 - NO_TRANSLATION retained_intron ENSMUSG00000037795 N4bp2 ENSMUST00000087264 ENSMUSP00000084519 TRANSLATION protein_coding - CCDS19310.1 5 1678.0 9.0 5.6 0.0 116.6 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000037795 N4bp2 ENSMUST00000200843 - NO_TRANSLATION retained_intron ENSMUSG00000055204 Ankrd17 ENSMUST00000168058 ENSMUSP00000128960 TRANSLATION protein_coding - - 5 2602.0 0.0 12.986 0.0 526.3 0.0 -3,-4 0.3023 26 11.838 MINOR ENSMUSG00000055204 Ankrd17 ENSMUST00000199424 - NO_TRANSLATION retained_intron ENSMUSG00000055204 Ankrd17 ENSMUST00000197327 - NO_TRANSLATION retained_intron ENSMUSG00000055204 Ankrd17 ENSMUST00000197037 - NO_TRANSLATION retained_intron ENSMUSG00000055204 Ankrd17 ENSMUST00000197021 ENSMUSP00000142575 TRANSLATION protein_coding - - 5 2494.0 0.0 13.066 6.6 526.3 0.0 -4,-5 1.0 26 14.0 PRINCIPAL:1 ENSMUSG00000055204 Ankrd17 ENSMUST00000202226 - NO_TRANSLATION retained_intron ENSMUSG00000055204 Ankrd17 ENSMUST00000199905 - NO_TRANSLATION retained_intron ENSMUSG00000055204 Ankrd17 ENSMUST00000081914 ENSMUSP00000080587 TRANSLATION protein_coding - CCDS57353.1 5 2352.0 0.0 12.816 0.0 526.3 0.0 -3,-4 0.4255 24 11.502 MINOR ENSMUSG00000055204 Ankrd17 ENSMUST00000196919 - NO_TRANSLATION retained_intron ENSMUSG00000055204 Ankrd17 ENSMUST00000199965 - NO_TRANSLATION retained_intron ENSMUSG00000055204 Ankrd17 ENSMUST00000199096 - NO_TRANSLATION retained_intron ENSMUSG00000055204 Ankrd17 ENSMUST00000014421 ENSMUSP00000014421 TRANSLATION protein_coding - CCDS57354.1 5 2603.0 0.0 13.066 0.0 526.3 0.0 -3,-4 0.5007 26 12.0 MINOR ENSMUSG00000055204 Ankrd17 ENSMUST00000200012 - NO_TRANSLATION retained_intron ENSMUSG00000042817 Flt3 ENSMUST00000049324 ENSMUSP00000039041 TRANSLATION protein_coding - CCDS39400.1 1 1000.0 20.0 13.46 1.5 378.8 0.0 1,-4 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000042817 Flt3 ENSMUST00000110549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041890 Git2 ENSMUST00000153756 - NO_TRANSLATION retained_intron ENSMUSG00000041890 Git2 ENSMUST00000131016 ENSMUSP00000116722 TRANSLATION protein_coding stop - 3 201.0 2.0 4.53 0.0 100.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041890 Git2 ENSMUST00000201442 - NO_TRANSLATION retained_intron ENSMUSG00000041890 Git2 ENSMUST00000146044 ENSMUSP00000115988 TRANSLATION protein_coding start - 3 311.0 0.0 4.05 0.0 256.5 0.0 -4,-5 0.0017 6 -2.0 MINOR ENSMUSG00000041890 Git2 ENSMUST00000131993 ENSMUSP00000118812 TRANSLATION protein_coding start/stop - 3 248.0 0.0 6.83 0.0 133.6 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000041890 Git2 ENSMUST00000202581 - NO_TRANSLATION retained_intron ENSMUSG00000041890 Git2 ENSMUST00000155908 ENSMUSP00000122302 TRANSLATION protein_coding - - 5 631.0 4.0 12.71 4.3 448.3 0.0 -4,-5 0.1311 6 13.026 MINOR ENSMUSG00000041890 Git2 ENSMUST00000144191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041890 Git2 ENSMUST00000131582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041890 Git2 ENSMUST00000135793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041890 Git2 ENSMUST00000086564 ENSMUSP00000083754 TRANSLATION protein_coding - CCDS84939.1 5 759.0 4.0 13.21 18.0 494.1 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000041890 Git2 ENSMUST00000130925 ENSMUSP00000115185 TRANSLATION protein_coding start/stop - 3 251.0 0.0 1.75 0.0 72.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000041890 Git2 ENSMUST00000112185 ENSMUSP00000107803 TRANSLATION protein_coding - CCDS19570.2 1 708.0 4.0 11.71 10.0 398.3 0.0 -4,-5 0.3877 9 9.368 MINOR ENSMUSG00000041890 Git2 ENSMUST00000043283 ENSMUSP00000039718 TRANSLATION protein_coding - CCDS39223.1 1 679.0 4.0 11.71 12.0 398.3 0.0 -4,-5 0.4317 8 9.84 MINOR ENSMUSG00000041890 Git2 ENSMUST00000112183 ENSMUSP00000107801 TRANSLATION protein_coding - - 5 681.0 4.0 11.71 12.0 398.3 0.0 -4,-5 0.3736 8 9.84 MINOR ENSMUSG00000041890 Git2 ENSMUST00000178440 ENSMUSP00000136796 TRANSLATION protein_coding - - 5 680.0 4.0 11.71 12.0 398.3 0.0 -4,-5 0.3736 8 9.84 MINOR ENSMUSG00000041890 Git2 ENSMUST00000133096 - NO_TRANSLATION retained_intron ENSMUSG00000039782 Cpeb2 ENSMUST00000169035 ENSMUSP00000125857 TRANSLATION protein_coding - CCDS51487.1 5 992.0 8.0 6.13 0.4 189.9 0.0 -4,0 0.7427 5 14.0 ALTERNATIVE:2 ENSMUSG00000039782 Cpeb2 ENSMUST00000198754 - NO_TRANSLATION retained_intron ENSMUSG00000039782 Cpeb2 ENSMUST00000200685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039782 Cpeb2 ENSMUST00000114066 ENSMUSP00000109700 TRANSLATION protein_coding start/stop - 5 279.0 0.0 2.8 0.0 101.9 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000039782 Cpeb2 ENSMUST00000114065 ENSMUSP00000109699 TRANSLATION protein_coding - - 5 1014.0 8.0 6.13 0.4 189.9 0.0 -4,0 0.5039 5 14.0 ALTERNATIVE:2 ENSMUSG00000039782 Cpeb2 ENSMUST00000127599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039782 Cpeb2 ENSMUST00000166713 ENSMUSP00000130921 TRANSLATION protein_coding - - 5 1022.0 8.0 6.13 0.4 189.9 0.0 -4,0 0.961 5 14.0 PRINCIPAL:4 ENSMUSG00000037364 Srrt ENSMUST00000196960 - NO_TRANSLATION retained_intron ENSMUSG00000037364 Srrt ENSMUST00000199473 - NO_TRANSLATION retained_intron ENSMUSG00000037364 Srrt ENSMUST00000197466 ENSMUSP00000142564 TRANSLATION protein_coding - CCDS80439.1 5 864.0 3.0 0.8775 0.0 447.8 0.0 -4,-5 0.4966 24 11.0 ALTERNATIVE:2 ENSMUSG00000037364 Srrt ENSMUST00000197144 - NO_TRANSLATION retained_intron ENSMUSG00000037364 Srrt ENSMUST00000199605 ENSMUSP00000142344 TRANSLATION nonsense_mediated_decay start - 5 239.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 3 -2.0 MINOR ENSMUSG00000037364 Srrt ENSMUST00000197409 - NO_TRANSLATION retained_intron ENSMUSG00000037364 Srrt ENSMUST00000199243 ENSMUSP00000143232 TRANSLATION protein_coding - CCDS80440.1 1 868.0 3.0 0.8775 0.0 448.2 0.0 -4,-5 1.0 24 11.0 PRINCIPAL:2 ENSMUSG00000037364 Srrt ENSMUST00000223263 ENSMUSP00000152514 TRANSLATION nonsense_mediated_decay start - 5 63.0 0.0 0.5 0.0 52.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037364 Srrt ENSMUST00000200643 - NO_TRANSLATION retained_intron ENSMUSG00000037364 Srrt ENSMUST00000196109 ENSMUSP00000142351 TRANSLATION protein_coding start - 5 517.0 3.0 0.44 0.0 305.5 0.0 -4,-5 0.0022 15 -2.0 MINOR ENSMUSG00000037364 Srrt ENSMUST00000196394 - NO_TRANSLATION retained_intron ENSMUSG00000037364 Srrt ENSMUST00000199365 ENSMUSP00000143454 TRANSLATION nonsense_mediated_decay start - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037364 Srrt ENSMUST00000198526 ENSMUSP00000142435 TRANSLATION nonsense_mediated_decay - - 5 467.0 0.0 0.4375 0.0 141.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000037364 Srrt ENSMUST00000197484 ENSMUSP00000142660 TRANSLATION nonsense_mediated_decay - - 3 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037364 Srrt ENSMUST00000199756 ENSMUSP00000143442 TRANSLATION protein_coding start/stop - 5 269.0 3.0 0.44 0.0 307.6 0.0 -4,-5 0.0002 10 -2.0 MINOR ENSMUSG00000037364 Srrt ENSMUST00000197376 - NO_TRANSLATION retained_intron ENSMUSG00000037364 Srrt ENSMUST00000196576 - NO_TRANSLATION retained_intron ENSMUSG00000038011 Dnah10 ENSMUST00000141137 ENSMUSP00000114593 TRANSLATION protein_coding - - 5 4534.0 60.0 51.538 0.0 3018.0 0.0 -4,-5 0.466 16 12.462 MINOR ENSMUSG00000038011 Dnah10 ENSMUST00000058440 ENSMUSP00000062995 TRANSLATION protein_coding - CCDS51649.1 5 4591.0 60.0 52.038 0.4 3093.6 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000038011 Dnah10 ENSMUST00000196708 - NO_TRANSLATION retained_intron ENSMUSG00000038011 Dnah10 ENSMUST00000197824 - NO_TRANSLATION retained_intron ENSMUSG00000038011 Dnah10 ENSMUST00000126998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038011 Dnah10 ENSMUST00000198055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029314 Gpat3 ENSMUST00000031255 ENSMUSP00000031255 TRANSLATION protein_coding - CCDS19470.1 1 438.0 0.0 6.05 7.4 68.4 2.0 1,-3 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000029314 Gpat3 ENSMUST00000112887 ENSMUSP00000108508 TRANSLATION protein_coding - CCDS19470.1 1 438.0 0.0 6.05 7.4 68.4 2.0 1,-3 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000029314 Gpat3 ENSMUST00000144623 ENSMUSP00000124076 TRANSLATION protein_coding stop - 2 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0305 - -2.0 MINOR ENSMUSG00000029314 Gpat3 ENSMUST00000092990 ENSMUSP00000090667 TRANSLATION protein_coding - CCDS19470.1 1 438.0 0.0 6.05 7.4 68.4 2.0 1,-3 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000029314 Gpat3 ENSMUST00000145612 ENSMUSP00000114813 TRANSLATION protein_coding stop - 2 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029644 Pdx1 ENSMUST00000085591 ENSMUSP00000082729 TRANSLATION protein_coding - CCDS39398.1 1 284.0 0.0 0.8 9.1 75.5 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000037685 Atp8a1 ENSMUST00000155911 - NO_TRANSLATION retained_intron ENSMUSG00000037685 Atp8a1 ENSMUST00000037380 ENSMUSP00000042215 TRANSLATION protein_coding - CCDS39104.1 1 1164.0 3.0 28.67 29.0 461.0 12.0 -4,-6 0.9851 30 15.0 ALTERNATIVE:1 ENSMUSG00000037685 Atp8a1 ENSMUST00000202248 - NO_TRANSLATION retained_intron ENSMUSG00000037685 Atp8a1 ENSMUST00000152433 - NO_TRANSLATION retained_intron ENSMUSG00000037685 Atp8a1 ENSMUST00000128726 - NO_TRANSLATION retained_intron ENSMUSG00000037685 Atp8a1 ENSMUST00000200955 ENSMUSP00000144465 TRANSLATION nonsense_mediated_decay - - 5 441.0 2.0 11.0 0.0 136.9 7.0 -4,-6 0.0022 12 -2.0 MINOR ENSMUSG00000037685 Atp8a1 ENSMUST00000149501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037685 Atp8a1 ENSMUST00000135930 ENSMUSP00000118379 TRANSLATION protein_coding - CCDS39105.1 1 1149.0 3.0 28.57 23.4 470.6 12.0 -4,-6 0.9885 33 14.002 PRINCIPAL:3 ENSMUSG00000037685 Atp8a1 ENSMUST00000130652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037685 Atp8a1 ENSMUST00000113651 ENSMUSP00000109281 TRANSLATION protein_coding - - 5 122.0 0.0 2.75 0.0 94.0 2.0 -4,-6 0.0004 2 1.0 MINOR ENSMUSG00000037685 Atp8a1 ENSMUST00000113652 ENSMUSP00000109282 TRANSLATION protein_coding - - 1 175.0 0.0 4.5 0.0 127.1 2.0 -4,-6 0.0004 4 1.0 MINOR ENSMUSG00000037685 Atp8a1 ENSMUST00000072971 ENSMUSP00000072738 TRANSLATION protein_coding - CCDS80295.1 1 1164.0 3.0 28.67 29.0 470.6 12.0 -4,-6 1.0 31 15.0 ALTERNATIVE:1 ENSMUSG00000037685 Atp8a1 ENSMUST00000141443 ENSMUSP00000121630 TRANSLATION protein_coding stop - 5 106.0 0.0 2.0 0.0 79.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000037685 Atp8a1 ENSMUST00000143013 - NO_TRANSLATION retained_intron ENSMUSG00000089809 Rasgef1b ENSMUST00000166484 ENSMUSP00000128947 TRANSLATION protein_coding - - 5 431.0 0.0 4.34 4.3 180.9 0.0 -4,-5 0.0887 - 5.57 MINOR ENSMUSG00000089809 Rasgef1b ENSMUST00000161516 ENSMUSP00000125057 TRANSLATION protein_coding - - 1 102.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0019 - 0.0 MINOR ENSMUSG00000089809 Rasgef1b ENSMUST00000161148 ENSMUSP00000125009 TRANSLATION protein_coding - - 1 44.0 0.0 0.0 0.0 0.0 0.0 1,-4 0.0019 - 0.0 MINOR ENSMUSG00000089809 Rasgef1b ENSMUST00000146396 ENSMUSP00000125723 TRANSLATION protein_coding - - 1 116.0 0.0 0.0 0.0 0.0 0.0 1,-4 0.0019 - 0.0 MINOR ENSMUSG00000089809 Rasgef1b ENSMUST00000142639 - NO_TRANSLATION retained_intron ENSMUSG00000089809 Rasgef1b ENSMUST00000031276 ENSMUSP00000031276 TRANSLATION protein_coding - CCDS39179.1 1 473.0 0.0 4.74 36.9 239.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000089809 Rasgef1b ENSMUST00000166632 - NO_TRANSLATION retained_intron ENSMUSG00000089809 Rasgef1b ENSMUST00000160803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089809 Rasgef1b ENSMUST00000168092 ENSMUSP00000129652 TRANSLATION protein_coding - CCDS51570.1 1 472.0 0.0 4.74 36.9 239.2 0.0 -4,-5 0.9976 - 12.0 ALTERNATIVE:1 ENSMUSG00000089809 Rasgef1b ENSMUST00000209346 ENSMUSP00000147997 TRANSLATION protein_coding - - 5 559.0 0.0 4.74 5.3 239.2 0.0 1,-4 0.3435 - 8.48 MINOR ENSMUSG00000029592 Usp30 ENSMUST00000200119 ENSMUSP00000142350 TRANSLATION protein_coding stop - 5 410.0 4.0 5.777 0.0 88.3 3.0 -4,0 0.0229 3 -2.0 MINOR ENSMUSG00000029592 Usp30 ENSMUST00000031588 ENSMUSP00000031588 TRANSLATION protein_coding - CCDS19558.1 1 517.0 4.0 5.887 8.1 139.7 3.0 -4,0 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000029592 Usp30 ENSMUST00000160164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029592 Usp30 ENSMUST00000196574 - NO_TRANSLATION retained_intron ENSMUSG00000029592 Usp30 ENSMUST00000162506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029592 Usp30 ENSMUST00000198457 - NO_TRANSLATION retained_intron ENSMUSG00000029592 Usp30 ENSMUST00000202603 ENSMUSP00000144522 TRANSLATION protein_coding stop - 5 144.0 0.0 1.732 0.0 39.8 3.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000085957 Syna ENSMUST00000149604 ENSMUSP00000116437 TRANSLATION protein_coding - CCDS19721.1 - 617.0 0.0 0.0 0.1 0.0 0.0 3,-2 0.971 - 0.0 PRINCIPAL:1 ENSMUSG00000047592 Nxpe5 ENSMUST00000159798 ENSMUSP00000124381 TRANSLATION protein_coding - CCDS51679.1 1 542.0 0.0 2.215 2.2 66.7 0.0 -1,-5 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000047592 Nxpe5 ENSMUST00000110929 ENSMUSP00000106554 TRANSLATION protein_coding - CCDS51679.1 5 542.0 0.0 2.215 2.2 66.7 0.0 -1,-5 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000047592 Nxpe5 ENSMUST00000161047 ENSMUSP00000124929 TRANSLATION protein_coding - - 1 564.0 0.0 2.215 0.0 66.7 0.0 -1,-5 0.0754 - 6.0 ALTERNATIVE:2 ENSMUSG00000047592 Nxpe5 ENSMUST00000159964 ENSMUSP00000123835 TRANSLATION protein_coding - - 5 543.0 0.0 2.215 0.0 66.7 0.0 -4,-5 0.3078 - 6.0 ALTERNATIVE:2 ENSMUSG00000047592 Nxpe5 ENSMUST00000162519 ENSMUSP00000124263 TRANSLATION protein_coding stop - 1 152.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039095 En2 ENSMUST00000036177 ENSMUSP00000036761 TRANSLATION protein_coding - CCDS19143.1 1 324.0 0.0 1.0 3.9 137.4 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000063531 Sema3e ENSMUST00000199698 - NO_TRANSLATION retained_intron ENSMUSG00000063531 Sema3e ENSMUST00000130116 - NO_TRANSLATION retained_intron ENSMUSG00000063531 Sema3e ENSMUST00000073957 ENSMUSP00000073612 TRANSLATION protein_coding - CCDS19093.1 1 775.0 0.0 10.37 10.4 522.8 0.0 4,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000045479 Or9a2 ENSMUST00000050412 ENSMUSP00000061622 TRANSLATION protein_coding - CCDS20056.1 - 314.0 0.0 1.0 10.9 155.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045479 Or9a2 ENSMUST00000214976 ENSMUSP00000149928 TRANSLATION protein_coding - CCDS20056.1 2 314.0 0.0 1.0 10.9 155.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045479 Or9a2 ENSMUST00000214752 ENSMUSP00000151070 TRANSLATION protein_coding - CCDS20056.1 5 314.0 0.0 1.0 10.9 155.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037140 Tas2r108 ENSMUST00000038750 ENSMUSP00000044089 TRANSLATION protein_coding - CCDS20032.1 - 297.0 0.0 0.0 3.6 305.1 0.0 -3,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000030324 Rho ENSMUST00000204493 ENSMUSP00000145464 TRANSLATION nonsense_mediated_decay - - 3 54.0 0.0 0.2 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000030324 Rho ENSMUST00000203531 - NO_TRANSLATION retained_intron ENSMUSG00000030324 Rho ENSMUST00000203877 ENSMUSP00000144952 TRANSLATION protein_coding - - 2 189.0 13.0 4.53 0.0 63.5 4.0 -4,-2 0.0021 2 0.9 MINOR ENSMUSG00000030324 Rho ENSMUST00000032471 ENSMUSP00000032471 TRANSLATION protein_coding - CCDS20446.1 1 348.0 26.0 7.08 24.4 238.7 9.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000030324 Rho ENSMUST00000203323 - NO_TRANSLATION retained_intron ENSMUSG00000030324 Rho ENSMUST00000203284 - NO_TRANSLATION retained_intron ENSMUSG00000030324 Rho ENSMUST00000204711 ENSMUSP00000144768 TRANSLATION protein_coding stop - 3 203.0 17.0 5.33 0.0 85.1 6.0 -1,-4 0.0027 2 -2.0 MINOR ENSMUSG00000076497 Trbj2-7 ENSMUST00000103298 ENSMUSP00000141994 TRANSLATION TR_J_gene start/stop - - 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000030235 Slco1c1 ENSMUST00000204998 ENSMUSP00000145342 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030235 Slco1c1 ENSMUST00000032362 ENSMUSP00000032362 TRANSLATION protein_coding - CCDS20677.1 1 715.0 0.0 0.0 15.0 632.4 25.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000030235 Slco1c1 ENSMUST00000203140 ENSMUSP00000145058 TRANSLATION protein_coding - - 5 544.0 0.0 0.0 0.0 518.5 20.0 -4,-6 0.0105 3 0.0 MINOR ENSMUSG00000030235 Slco1c1 ENSMUST00000203755 - NO_TRANSLATION retained_intron ENSMUSG00000030235 Slco1c1 ENSMUST00000135562 ENSMUSP00000138093 TRANSLATION nonsense_mediated_decay - - 1 469.0 0.0 0.0 0.0 443.9 17.0 -4,-5 0.0031 2 -2.0 MINOR ENSMUSG00000030235 Slco1c1 ENSMUST00000205214 ENSMUSP00000144889 TRANSLATION protein_coding - - 5 666.0 0.0 0.0 3.3 434.2 23.0 -4,-5 0.0833 4 0.656 MINOR ENSMUSG00000042460 C1galt1 ENSMUST00000040159 ENSMUSP00000047931 TRANSLATION protein_coding - CCDS19908.1 1 363.0 0.0 1.8 7.7 57.4 0.0 0,-4 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000076552 Igkv4-61 ENSMUST00000199160 ENSMUSP00000143767 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 62.4 0.0 0,-3 0.8198 1 -2.0 PRINCIPAL:5 ENSMUSG00000076552 Igkv4-61 ENSMUST00000103353 ENSMUSP00000100154 TRANSLATION IG_V_gene start/stop - - 94.0 0.0 1.0 0.0 62.4 0.0 -4,-5 0.06 1 -2.0 ALTERNATIVE:2 ENSMUSG00000042992 Borcs5 ENSMUST00000204133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042992 Borcs5 ENSMUST00000203234 - NO_TRANSLATION retained_intron ENSMUSG00000042992 Borcs5 ENSMUST00000062755 ENSMUSP00000054913 TRANSLATION protein_coding - CCDS20638.1 1 195.0 0.0 2.0 28.8 198.0 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000042992 Borcs5 ENSMUST00000166591 ENSMUSP00000127413 TRANSLATION protein_coding - CCDS51936.1 2 196.0 0.0 2.0 0.0 198.0 0.0 -4,-2 0.3781 12 12.0 MINOR ENSMUSG00000042992 Borcs5 ENSMUST00000203163 - NO_TRANSLATION retained_intron ENSMUSG00000033542 Arhgef5 ENSMUST00000182924 ENSMUSP00000138192 TRANSLATION protein_coding start - 5 796.0 0.0 5.405 0.0 166.1 0.0 -4,-1 0.0238 16 -2.0 MINOR ENSMUSG00000033542 Arhgef5 ENSMUST00000182647 - NO_TRANSLATION retained_intron ENSMUSG00000033542 Arhgef5 ENSMUST00000182190 - NO_TRANSLATION retained_intron ENSMUSG00000033542 Arhgef5 ENSMUST00000182752 - NO_TRANSLATION retained_intron ENSMUSG00000033542 Arhgef5 ENSMUST00000183313 - NO_TRANSLATION retained_intron ENSMUSG00000033542 Arhgef5 ENSMUST00000183227 - NO_TRANSLATION retained_intron ENSMUSG00000033542 Arhgef5 ENSMUST00000183094 - NO_TRANSLATION retained_intron ENSMUSG00000033542 Arhgef5 ENSMUST00000031750 ENSMUSP00000031750 TRANSLATION protein_coding - CCDS51759.1 5 1581.0 0.0 5.655 0.0 885.3 0.0 -4,-5 1.0 23 12.0 PRINCIPAL:1 ENSMUSG00000073096 Lrrc61 ENSMUST00000101436 ENSMUSP00000098979 TRANSLATION protein_coding - CCDS39478.1 1 259.0 0.0 0.97 20.7 28.1 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000073096 Lrrc61 ENSMUST00000204071 ENSMUSP00000145164 TRANSLATION protein_coding stop - 2 34.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073096 Lrrc61 ENSMUST00000153222 ENSMUSP00000118573 TRANSLATION protein_coding stop - 2 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073096 Lrrc61 ENSMUST00000203627 ENSMUSP00000145141 TRANSLATION protein_coding stop - 2 95.0 0.0 0.97 0.0 28.1 0.0 -4,-6 0.0324 1 -2.0 MINOR ENSMUSG00000073096 Lrrc61 ENSMUST00000146245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073096 Lrrc61 ENSMUST00000114545 ENSMUSP00000110192 TRANSLATION protein_coding - CCDS39478.1 1 259.0 0.0 0.97 20.7 28.1 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030093 Wnt7a ENSMUST00000132936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030093 Wnt7a ENSMUST00000133092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030093 Wnt7a ENSMUST00000032180 ENSMUSP00000032180 TRANSLATION protein_coding - CCDS39568.1 1 349.0 0.0 3.0 34.4 408.2 0.0 -2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000076522 Igkv16-104 ENSMUST00000103323 ENSMUSP00000100124 TRANSLATION IG_V_gene stop - - 116.0 0.0 1.2 0.0 60.1 0.0 4,-1 0.8221 2 -2.0 PRINCIPAL:1 ENSMUSG00000030316 Tamm41 ENSMUST00000137654 - NO_TRANSLATION retained_intron ENSMUSG00000030316 Tamm41 ENSMUST00000144969 - NO_TRANSLATION retained_intron ENSMUSG00000030316 Tamm41 ENSMUST00000172495 ENSMUSP00000134105 TRANSLATION nonsense_mediated_decay start - 3 124.0 0.0 2.5 0.0 143.2 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000030316 Tamm41 ENSMUST00000174848 ENSMUSP00000133340 TRANSLATION protein_coding stop - 3 221.0 0.0 5.08 0.0 241.6 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000030316 Tamm41 ENSMUST00000144445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030316 Tamm41 ENSMUST00000112975 - NO_TRANSLATION retained_intron ENSMUSG00000030316 Tamm41 ENSMUST00000154621 ENSMUSP00000116995 TRANSLATION nonsense_mediated_decay - - 3 149.0 0.0 2.2 0.0 114.1 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000030316 Tamm41 ENSMUST00000032461 ENSMUSP00000032461 TRANSLATION protein_coding - CCDS20437.1 1 337.0 0.0 8.5 23.6 369.2 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000029802 Abcg2 ENSMUST00000143752 ENSMUSP00000138608 TRANSLATION nonsense_mediated_decay - - 5 576.0 9.0 9.9 0.0 175.5 6.0 -4,-7 0.0076 11 -2.0 MINOR ENSMUSG00000029802 Abcg2 ENSMUST00000124542 - NO_TRANSLATION retained_intron ENSMUSG00000029802 Abcg2 ENSMUST00000147213 ENSMUSP00000120940 TRANSLATION protein_coding stop - 5 115.0 9.0 2.12 0.0 0.0 0.0 -4,-7 0.0005 3 -2.0 MINOR ENSMUSG00000029802 Abcg2 ENSMUST00000204924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029802 Abcg2 ENSMUST00000145161 ENSMUSP00000122924 TRANSLATION protein_coding stop - 2 172.0 9.0 3.45 0.0 38.7 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000029802 Abcg2 ENSMUST00000145685 ENSMUSP00000138703 TRANSLATION nonsense_mediated_decay start - 5 130.0 0.0 1.75 0.0 39.4 2.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029802 Abcg2 ENSMUST00000031822 ENSMUSP00000031822 TRANSLATION protein_coding - CCDS20195.1 1 657.0 9.0 12.355 17.2 210.0 7.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000029802 Abcg2 ENSMUST00000203146 ENSMUSP00000145435 TRANSLATION protein_coding stop - 5 159.0 9.0 3.53 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000029802 Abcg2 ENSMUST00000148008 ENSMUSP00000114454 TRANSLATION protein_coding stop - 3 50.0 1.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000029802 Abcg2 ENSMUST00000134426 - NO_TRANSLATION retained_intron ENSMUSG00000029802 Abcg2 ENSMUST00000143447 - NO_TRANSLATION retained_intron ENSMUSG00000029802 Abcg2 ENSMUST00000204948 ENSMUSP00000144876 TRANSLATION protein_coding stop - 2 172.0 9.0 3.45 0.0 38.7 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000029802 Abcg2 ENSMUST00000114294 ENSMUSP00000109933 TRANSLATION protein_coding - CCDS20195.1 5 657.0 9.0 12.355 17.2 210.0 7.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000000693 Loxl3 ENSMUST00000000707 ENSMUSP00000000707 TRANSLATION protein_coding - CCDS20266.1 1 754.0 0.0 9.673 5.5 675.8 0.0 2,-2 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000000693 Loxl3 ENSMUST00000152679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000693 Loxl3 ENSMUST00000101257 ENSMUSP00000098815 TRANSLATION protein_coding - - 1 472.0 0.0 4.873 0.0 360.1 0.0 2,-2 0.0017 6 0.0 MINOR ENSMUSG00000000693 Loxl3 ENSMUST00000204318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000693 Loxl3 ENSMUST00000155502 - NO_TRANSLATION retained_intron ENSMUSG00000096422 Igkv12-44 ENSMUST00000103367 ENSMUSP00000100168 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.1 0.0 63.7 0.0 4,-1 0.8221 3 -2.0 PRINCIPAL:1 ENSMUSG00000047013 Fbxo41 ENSMUST00000159062 ENSMUSP00000125671 TRANSLATION protein_coding - CCDS20296.1 1 873.0 4.0 1.738 7.8 34.8 0.0 -4,-1 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000047013 Fbxo41 ENSMUST00000161078 ENSMUSP00000124524 TRANSLATION protein_coding - CCDS20296.1 1 873.0 4.0 1.738 7.8 34.8 0.0 -4,-1 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000047013 Fbxo41 ENSMUST00000161546 ENSMUSP00000124754 TRANSLATION protein_coding - CCDS20296.1 1 873.0 4.0 1.738 7.8 34.8 0.0 -4,-1 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000047976 Kcna1 ENSMUST00000203094 ENSMUSP00000144947 TRANSLATION protein_coding - CCDS20555.1 - 495.0 0.0 1.0 36.2 271.2 3.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000047976 Kcna1 ENSMUST00000055168 ENSMUSP00000055225 TRANSLATION protein_coding - CCDS20555.1 1 495.0 0.0 1.0 36.2 271.2 3.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000047976 Kcna1 ENSMUST00000205171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073110 Or2a56 ENSMUST00000095955 ENSMUSP00000093649 TRANSLATION protein_coding - CCDS20085.1 - 310.0 0.0 1.0 12.5 204.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073110 Or2a56 ENSMUST00000204092 ENSMUSP00000144691 TRANSLATION protein_coding - CCDS20085.1 5 310.0 0.0 1.0 12.5 204.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030056 Isy1 ENSMUST00000203429 - NO_TRANSLATION retained_intron ENSMUSG00000030056 Isy1 ENSMUST00000205070 ENSMUSP00000144956 TRANSLATION nonsense_mediated_decay - - 2 50.0 0.0 1.58 0.0 61.9 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000030056 Isy1 ENSMUST00000204421 - NO_TRANSLATION retained_intron ENSMUSG00000030056 Isy1 ENSMUST00000089497 ENSMUSP00000086923 TRANSLATION protein_coding - CCDS39548.1 1 285.0 0.0 3.08 31.3 333.3 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000030056 Isy1 ENSMUST00000204310 - NO_TRANSLATION retained_intron ENSMUSG00000030056 Isy1 ENSMUST00000204881 ENSMUSP00000144710 TRANSLATION nonsense_mediated_decay - - 3 150.0 0.0 3.08 0.0 174.7 0.0 -4,-2 0.0215 3 -2.0 MINOR ENSMUSG00000030056 Isy1 ENSMUST00000204892 - NO_TRANSLATION retained_intron ENSMUSG00000030056 Isy1 ENSMUST00000204431 ENSMUSP00000145001 TRANSLATION protein_coding stop - 5 95.0 0.0 2.08 0.0 63.7 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000033024 Klra9 ENSMUST00000071554 ENSMUSP00000071485 TRANSLATION protein_coding - CCDS39667.1 1 266.0 3.0 4.8 0.1 235.7 1.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033024 Klra9 ENSMUST00000112032 ENSMUSP00000107663 TRANSLATION protein_coding - CCDS39667.1 1 266.0 3.0 4.8 0.1 235.7 1.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038227 Hoxa9 ENSMUST00000174115 - NO_TRANSLATION retained_intron ENSMUSG00000038227 Hoxa9 ENSMUST00000156540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038227 Hoxa9 ENSMUST00000048680 ENSMUSP00000046939 TRANSLATION protein_coding - CCDS20146.1 1 271.0 0.0 1.0 11.0 303.3 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000038227 Hoxa9 ENSMUST00000114425 ENSMUSP00000110068 TRANSLATION protein_coding - - 2 105.0 0.0 0.0 0.0 121.4 0.0 -4,-7 0.0001 1 0.0 MINOR ENSMUSG00000038227 Hoxa9 ENSMUST00000154641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058979 Hdhd5 ENSMUST00000125666 - NO_TRANSLATION retained_intron ENSMUSG00000058979 Hdhd5 ENSMUST00000075303 ENSMUSP00000074775 TRANSLATION protein_coding - CCDS20483.1 1 419.0 7.0 2.015 4.5 91.6 0.0 -4,0 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000058979 Hdhd5 ENSMUST00000204390 - NO_TRANSLATION retained_intron ENSMUSG00000058979 Hdhd5 ENSMUST00000141029 - NO_TRANSLATION retained_intron ENSMUSG00000076609 Igkc ENSMUST00000103410 ENSMUSP00000100206 TRANSLATION IG_C_gene start - - 107.0 0.0 1.0 0.0 93.5 0.0 -4,-5 0.7795 5 -2.0 PRINCIPAL:1 ENSMUSG00000030031 Kbtbd8 ENSMUST00000122938 ENSMUSP00000145009 TRANSLATION protein_coding stop - 3 142.0 0.0 1.4 0.0 77.3 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000030031 Kbtbd8 ENSMUST00000145387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030031 Kbtbd8 ENSMUST00000119582 ENSMUSP00000113739 TRANSLATION protein_coding - CCDS51857.1 1 522.0 0.0 1.3 8.6 243.5 0.0 -4,-5 0.2641 4 8.354 MINOR ENSMUSG00000030031 Kbtbd8 ENSMUST00000032107 ENSMUSP00000032107 TRANSLATION protein_coding - CCDS51856.1 1 599.0 0.0 1.9 26.2 292.8 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000051499 Zfp786 ENSMUST00000204984 - NO_TRANSLATION retained_intron ENSMUSG00000051499 Zfp786 ENSMUST00000058844 ENSMUSP00000057495 TRANSLATION protein_coding - CCDS20098.1 1 777.0 47.0 0.5 0.1 281.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000051499 Zfp786 ENSMUST00000143979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018999 Slc35b4 ENSMUST00000019143 ENSMUSP00000019143 TRANSLATION protein_coding - CCDS19989.1 1 331.0 0.0 8.25 26.9 393.5 0.0 0,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000018999 Slc35b4 ENSMUST00000145857 - NO_TRANSLATION retained_intron ENSMUSG00000018999 Slc35b4 ENSMUST00000146514 - NO_TRANSLATION retained_intron ENSMUSG00000018999 Slc35b4 ENSMUST00000138250 ENSMUSP00000138721 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.75 0.0 0.0 0.0 1,-3 0.0035 - -2.0 MINOR ENSMUSG00000094262 Igkv4-62 ENSMUST00000198345 ENSMUSP00000142538 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 61.1 0.0 0,-3 0.7904 - -2.0 PRINCIPAL:1 ENSMUSG00000076570 Igkv12-38 ENSMUST00000198880 ENSMUSP00000142787 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 63.9 0.0 3,-2 0.8234 4 -2.0 PRINCIPAL:1 ENSMUSG00000000628 Hk2 ENSMUST00000169270 ENSMUSP00000128572 TRANSLATION protein_coding stop - 3 43.0 0.0 1.0 0.0 34.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000628 Hk2 ENSMUST00000168725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000628 Hk2 ENSMUST00000000642 ENSMUSP00000000642 TRANSLATION protein_coding - CCDS20263.1 1 917.0 51.0 18.08 33.9 1103.6 0.0 -4,-7 1.0 30 22.0 PRINCIPAL:1 ENSMUSG00000000628 Hk2 ENSMUST00000170833 ENSMUSP00000125986 TRANSLATION protein_coding - - 5 889.0 51.0 17.0 9.5 1098.1 0.0 -4,-6 0.3586 29 16.542 MINOR ENSMUSG00000073002 Vamp5 ENSMUST00000206154 ENSMUSP00000145880 TRANSLATION protein_coding - - 1 83.0 0.0 1.75 0.0 67.3 2.0 -4,-6 0.0063 1 9.276 MINOR ENSMUSG00000073002 Vamp5 ENSMUST00000074231 ENSMUSP00000073852 TRANSLATION protein_coding - CCDS39513.1 1 102.0 0.0 2.25 0.4 87.6 2.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000073002 Vamp5 ENSMUST00000101285 ENSMUSP00000098843 TRANSLATION protein_coding - CCDS39513.1 1 102.0 0.0 2.25 0.4 87.6 2.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000058349 Tas2r117 ENSMUST00000068302 ENSMUSP00000069768 TRANSLATION protein_coding - CCDS20623.1 - 330.0 0.0 0.0 0.0 280.9 0.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038346 Zfp384 ENSMUST00000140835 - NO_TRANSLATION retained_intron ENSMUSG00000038346 Zfp384 ENSMUST00000112428 ENSMUSP00000108047 TRANSLATION protein_coding - CCDS57448.1 1 554.0 24.0 2.95 4.7 110.9 0.0 -4,-5 0.3413 5 7.374 MINOR ENSMUSG00000038346 Zfp384 ENSMUST00000132863 - NO_TRANSLATION retained_intron ENSMUSG00000038346 Zfp384 ENSMUST00000152752 ENSMUSP00000117330 TRANSLATION protein_coding stop - 3 125.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038346 Zfp384 ENSMUST00000137325 - NO_TRANSLATION retained_intron ENSMUSG00000038346 Zfp384 ENSMUST00000249621 ENSMUSP00000159830 TRANSLATION protein_coding - - - 571.0 24.0 2.95 0.0 110.9 0.0 -4,-6 0.0223 5 5.864 MINOR ENSMUSG00000038346 Zfp384 ENSMUST00000084275 ENSMUSP00000081296 TRANSLATION protein_coding - CCDS39631.1 1 584.0 32.0 3.75 5.9 154.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:2 ENSMUSG00000038346 Zfp384 ENSMUST00000145566 - NO_TRANSLATION retained_intron ENSMUSG00000038346 Zfp384 ENSMUST00000144308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038346 Zfp384 ENSMUST00000145138 - NO_TRANSLATION retained_intron ENSMUSG00000038346 Zfp384 ENSMUST00000046064 ENSMUSP00000037986 TRANSLATION protein_coding - CCDS57448.1 5 554.0 24.0 2.95 4.7 110.9 0.0 -4,-5 0.3413 5 7.374 MINOR ENSMUSG00000038346 Zfp384 ENSMUST00000112425 ENSMUSP00000108044 TRANSLATION protein_coding - - 5 523.0 24.0 2.75 4.8 110.9 0.0 -4,-5 0.2864 5 7.02 MINOR ENSMUSG00000038346 Zfp384 ENSMUST00000131555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038346 Zfp384 ENSMUST00000088308 ENSMUSP00000085648 TRANSLATION protein_coding - CCDS39631.1 5 584.0 32.0 3.75 5.9 154.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:2 ENSMUSG00000038346 Zfp384 ENSMUST00000112427 ENSMUSP00000108046 TRANSLATION protein_coding - CCDS39631.1 5 584.0 32.0 3.75 5.9 154.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:2 ENSMUSG00000038346 Zfp384 ENSMUST00000054553 ENSMUSP00000086354 TRANSLATION protein_coding - - 5 468.0 24.0 2.75 1.0 110.9 0.0 -4,-5 0.0144 5 5.468 MINOR ENSMUSG00000038346 Zfp384 ENSMUST00000112424 ENSMUSP00000108043 TRANSLATION protein_coding - - 5 568.0 32.0 3.75 4.1 154.7 0.0 -4,-5 0.6793 5 15.266 ALTERNATIVE:2 ENSMUSG00000029686 Cul1 ENSMUST00000031697 ENSMUSP00000031697 TRANSLATION protein_coding - CCDS20095.1 1 776.0 0.0 18.53 31.7 769.5 0.0 -4,-5 1.0 31 16.0 PRINCIPAL:1 ENSMUSG00000029686 Cul1 ENSMUST00000152547 ENSMUSP00000114959 TRANSLATION protein_coding stop - 2 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029686 Cul1 ENSMUST00000126877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029686 Cul1 ENSMUST00000149531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029686 Cul1 ENSMUST00000151934 - NO_TRANSLATION retained_intron ENSMUSG00000029686 Cul1 ENSMUST00000154201 - NO_TRANSLATION retained_intron ENSMUSG00000029686 Cul1 ENSMUST00000146200 ENSMUSP00000122702 TRANSLATION protein_coding stop - 1 699.0 0.0 16.28 0.0 673.6 0.0 -4,-5 0.0444 30 -2.0 MINOR ENSMUSG00000029686 Cul1 ENSMUST00000143941 ENSMUSP00000144845 TRANSLATION protein_coding - - 1 51.0 0.0 1.2 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000029686 Cul1 ENSMUST00000146828 ENSMUSP00000121608 TRANSLATION protein_coding stop - 2 110.0 0.0 1.4 0.0 39.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030336 Cd27 ENSMUST00000152650 - NO_TRANSLATION retained_intron ENSMUSG00000030336 Cd27 ENSMUST00000112281 ENSMUSP00000107900 TRANSLATION protein_coding - CCDS71839.1 3 190.0 0.0 1.6 0.3 0.0 2.0 1,-3 0.2622 2 4.362 MINOR ENSMUSG00000030336 Cd27 ENSMUST00000112282 ENSMUSP00000107901 TRANSLATION protein_coding - CCDS39638.1 1 146.0 0.0 0.6 0.0 0.0 2.0 1,-3 0.2756 1 1.638 MINOR ENSMUSG00000030336 Cd27 ENSMUST00000032486 ENSMUSP00000032486 TRANSLATION protein_coding - CCDS39639.1 1 250.0 0.0 2.2 0.4 0.0 2.0 1,-3 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000030336 Cd27 ENSMUST00000151527 - NO_TRANSLATION retained_intron ENSMUSG00000030336 Cd27 ENSMUST00000135205 - NO_TRANSLATION retained_intron ENSMUSG00000023456 Tpi1 ENSMUST00000133251 - NO_TRANSLATION retained_intron ENSMUSG00000023456 Tpi1 ENSMUST00000239432 ENSMUSP00000159368 TRANSLATION protein_coding - CCDS20530.2 - 299.0 11.0 6.5 0.0 0.0 0.0 -4,-5 0.1116 17 12.0 MINOR ENSMUSG00000023456 Tpi1 ENSMUST00000139716 - NO_TRANSLATION retained_intron ENSMUSG00000023456 Tpi1 ENSMUST00000172132 ENSMUSP00000130858 TRANSLATION protein_coding - - 1 249.0 11.0 6.5 27.9 0.0 0.0 -4,-6 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000023456 Tpi1 ENSMUST00000154883 - NO_TRANSLATION retained_intron ENSMUSG00000023456 Tpi1 ENSMUST00000149610 ENSMUSP00000125292 TRANSLATION protein_coding - - 2 167.0 10.0 4.5 3.9 0.0 0.0 -4,-6 0.1125 12 7.764 MINOR ENSMUSG00000023456 Tpi1 ENSMUST00000204602 - NO_TRANSLATION retained_intron ENSMUSG00000062546 V1ra8 ENSMUST00000078371 ENSMUSP00000077479 TRANSLATION protein_coding - CCDS20354.1 - 279.0 0.0 0.0 0.0 268.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000029804 Herc3 ENSMUST00000126292 ENSMUSP00000122401 TRANSLATION protein_coding stop - 3 77.0 0.0 1.16 0.0 49.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029804 Herc3 ENSMUST00000031823 ENSMUSP00000031823 TRANSLATION protein_coding - - 1 913.0 0.0 10.682 0.0 385.7 0.0 -4,-6 0.038 5 1.602 MINOR ENSMUSG00000029804 Herc3 ENSMUST00000122981 ENSMUSP00000119115 TRANSLATION protein_coding stop - 2 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029804 Herc3 ENSMUST00000205139 - NO_TRANSLATION retained_intron ENSMUSG00000029804 Herc3 ENSMUST00000122908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029804 Herc3 ENSMUST00000204196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029804 Herc3 ENSMUST00000141600 ENSMUSP00000122762 TRANSLATION protein_coding stop - 2 32.0 0.0 0.36 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029804 Herc3 ENSMUST00000154290 - NO_TRANSLATION retained_intron ENSMUSG00000029804 Herc3 ENSMUST00000204629 ENSMUSP00000145319 TRANSLATION protein_coding start - 5 97.0 0.0 1.88 0.0 60.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029804 Herc3 ENSMUST00000203714 ENSMUSP00000145273 TRANSLATION protein_coding stop - 5 75.0 0.0 1.16 0.0 49.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029804 Herc3 ENSMUST00000041401 ENSMUSP00000040025 TRANSLATION protein_coding - CCDS20196.1 1 1050.0 0.0 12.882 24.9 576.2 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000029804 Herc3 ENSMUST00000131132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068329 Htra2 ENSMUST00000204281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068329 Htra2 ENSMUST00000134606 ENSMUSP00000115547 TRANSLATION protein_coding start/stop - 1 294.0 10.0 6.838 0.0 137.7 0.0 -4,-7 0.0091 6 -2.0 MINOR ENSMUSG00000068329 Htra2 ENSMUST00000113963 ENSMUSP00000109596 TRANSLATION protein_coding - - 5 426.0 10.0 6.758 1.0 110.4 0.0 -4,0 0.0198 9 14.862 MINOR ENSMUSG00000068329 Htra2 ENSMUST00000150217 ENSMUSP00000118234 TRANSLATION protein_coding start/stop - 5 249.0 10.0 5.659 0.0 99.7 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000068329 Htra2 ENSMUST00000089645 ENSMUSP00000087073 TRANSLATION protein_coding - CCDS20267.1 1 458.0 10.0 7.508 6.3 137.7 0.0 -4,0 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000068329 Htra2 ENSMUST00000203339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068329 Htra2 ENSMUST00000154829 - NO_TRANSLATION retained_intron ENSMUSG00000068329 Htra2 ENSMUST00000144058 - NO_TRANSLATION retained_intron ENSMUSG00000068329 Htra2 ENSMUST00000122955 ENSMUSP00000138153 TRANSLATION nonsense_mediated_decay - - 5 328.0 10.0 4.38 0.0 98.1 0.0 -4,0 0.0018 7 -2.0 MINOR ENSMUSG00000068329 Htra2 ENSMUST00000113962 ENSMUSP00000109595 TRANSLATION protein_coding - - 5 361.0 6.0 5.758 1.0 40.3 0.0 -4,0 0.0165 7 5.994 MINOR ENSMUSG00000068329 Htra2 ENSMUST00000132099 ENSMUSP00000138148 TRANSLATION nonsense_mediated_decay start - 3 137.0 7.0 1.915 0.0 61.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000014104 Sval2 ENSMUST00000120605 ENSMUSP00000113417 TRANSLATION protein_coding - - 2 105.0 0.0 2.75 0.0 111.7 0.0 -4,-5 0.0004 2 7.938 MINOR ENSMUSG00000014104 Sval2 ENSMUST00000119995 ENSMUSP00000113701 TRANSLATION protein_coding - - 3 124.0 0.0 3.08 0.0 121.0 0.0 -4,-6 0.0221 2 9.156 MINOR ENSMUSG00000014104 Sval2 ENSMUST00000014248 ENSMUSP00000014248 TRANSLATION protein_coding - CCDS20057.1 1 144.0 0.0 3.08 0.1 168.4 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000014104 Sval2 ENSMUST00000143093 - NO_TRANSLATION retained_intron ENSMUSG00000034456 Uroc1 ENSMUST00000046128 ENSMUSP00000040424 TRANSLATION protein_coding - CCDS39561.1 1 676.0 31.0 18.25 27.1 289.6 0.0 -4,-7 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000034456 Uroc1 ENSMUST00000164761 ENSMUSP00000127114 TRANSLATION protein_coding - CCDS85094.1 1 710.0 31.0 17.25 0.0 270.2 0.0 -4,-7 0.0583 19 14.838 MINOR ENSMUSG00000046947 Adck2 ENSMUST00000051249 ENSMUSP00000050256 TRANSLATION protein_coding - - 5 568.0 2.0 0.765 0.1 0.0 0.0 -4,0 0.014 4 5.456 MINOR ENSMUSG00000046947 Adck2 ENSMUST00000127427 - NO_TRANSLATION retained_intron ENSMUSG00000046947 Adck2 ENSMUST00000134913 - NO_TRANSLATION retained_intron ENSMUSG00000046947 Adck2 ENSMUST00000145788 ENSMUSP00000144149 TRANSLATION protein_coding stop - 3 197.0 2.0 1.015 0.0 33.3 0.0 -4,-7 0.0009 3 -2.0 MINOR ENSMUSG00000046947 Adck2 ENSMUST00000149304 ENSMUSP00000121590 TRANSLATION nonsense_mediated_decay start - 5 118.0 0.0 0.865 0.0 35.8 0.0 -4,-7 0.0004 2 -2.0 MINOR ENSMUSG00000046947 Adck2 ENSMUST00000140364 ENSMUSP00000123563 TRANSLATION protein_coding - CCDS20024.1 1 617.0 2.0 1.329 2.2 53.1 0.0 -4,0 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000030271 Ogg1 ENSMUST00000129871 - NO_TRANSLATION retained_intron ENSMUSG00000030271 Ogg1 ENSMUST00000147945 - NO_TRANSLATION retained_intron ENSMUSG00000030271 Ogg1 ENSMUST00000204834 ENSMUSP00000144905 TRANSLATION nonsense_mediated_decay - - 5 137.0 2.0 2.0 0.0 96.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000030271 Ogg1 ENSMUST00000203721 - NO_TRANSLATION retained_intron ENSMUSG00000030271 Ogg1 ENSMUST00000032406 ENSMUSP00000032406 TRANSLATION protein_coding - CCDS20414.1 1 345.0 13.0 6.93 4.2 189.7 0.0 -4,0 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000030271 Ogg1 ENSMUST00000136263 ENSMUSP00000144792 TRANSLATION nonsense_mediated_decay - - 1 138.0 2.0 2.0 0.0 94.6 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000030271 Ogg1 ENSMUST00000154350 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052337 Immt ENSMUST00000205371 - NO_TRANSLATION retained_intron ENSMUSG00000052337 Immt ENSMUST00000166975 ENSMUSP00000128367 TRANSLATION protein_coding - CCDS57427.1 1 470.0 0.0 0.0 0.0 335.8 3.0 -4,0 0.0362 30 0.0 MINOR ENSMUSG00000052337 Immt ENSMUST00000206625 - NO_TRANSLATION retained_intron ENSMUSG00000052337 Immt ENSMUST00000207015 - NO_TRANSLATION retained_intron ENSMUSG00000052337 Immt ENSMUST00000166938 ENSMUSP00000128967 TRANSLATION protein_coding - CCDS57428.1 1 679.0 0.0 0.0 5.4 654.3 3.0 -4,0 0.6177 41 1.887 MINOR ENSMUSG00000052337 Immt ENSMUST00000167244 - NO_TRANSLATION retained_intron ENSMUSG00000052337 Immt ENSMUST00000207003 ENSMUSP00000145872 TRANSLATION nonsense_mediated_decay - - 5 488.0 0.0 0.0 0.0 358.4 3.0 -4,0 0.0032 28 -2.0 MINOR ENSMUSG00000052337 Immt ENSMUST00000171057 ENSMUSP00000133017 TRANSLATION protein_coding stop - 3 188.0 0.0 0.0 0.0 84.5 3.0 -4,0 0.0 10 -2.0 MINOR ENSMUSG00000052337 Immt ENSMUST00000114151 ENSMUSP00000109788 TRANSLATION protein_coding - CCDS57426.1 1 709.0 0.0 0.0 5.5 697.0 3.0 -4,0 0.8013 41 1.929 ALTERNATIVE:1 ENSMUSG00000052337 Immt ENSMUST00000101301 ENSMUSP00000098859 TRANSLATION protein_coding - CCDS57425.1 1 746.0 0.0 0.0 8.0 686.8 3.0 -4,0 1.0 44 3.0 PRINCIPAL:3 ENSMUSG00000052337 Immt ENSMUST00000205628 ENSMUSP00000146205 TRANSLATION protein_coding start - 1 289.0 0.0 0.0 0.0 324.4 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000052337 Immt ENSMUST00000064062 ENSMUSP00000066181 TRANSLATION protein_coding - CCDS39509.1 1 757.0 0.0 0.0 7.3 684.6 3.0 -4,0 0.8975 42 2.7 ALTERNATIVE:1 ENSMUSG00000052337 Immt ENSMUST00000165331 ENSMUSP00000128834 TRANSLATION protein_coding stop - 1 264.0 0.0 0.0 0.0 126.1 3.0 -4,0 0.0005 14 -2.0 MINOR ENSMUSG00000052337 Immt ENSMUST00000206330 ENSMUSP00000145642 TRANSLATION protein_coding start - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000081849 ENSMUSP00000080532 TRANSLATION protein_coding - CCDS39620.1 5 958.0 4.0 2.7 2.1 158.8 0.0 -4,-5 0.4916 6 16.424 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000161290 ENSMUSP00000125110 TRANSLATION nonsense_mediated_decay start - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000160863 - NO_TRANSLATION retained_intron ENSMUSG00000040669 Phc1 ENSMUST00000161054 ENSMUSP00000123911 TRANSLATION protein_coding - CCDS39620.1 1 958.0 4.0 2.7 2.1 158.8 0.0 -4,-5 0.4916 6 16.424 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000160843 ENSMUSP00000125030 TRANSLATION protein_coding stop - 5 205.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000160696 ENSMUSP00000125580 TRANSLATION protein_coding - CCDS20494.1 1 1010.0 4.0 2.7 6.2 158.8 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000040669 Phc1 ENSMUST00000161739 ENSMUSP00000125568 TRANSLATION protein_coding - CCDS20494.1 1 1010.0 4.0 2.7 6.2 158.8 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000040669 Phc1 ENSMUST00000159252 ENSMUSP00000124678 TRANSLATION protein_coding - - 5 965.0 4.0 2.7 0.0 158.8 0.0 -4,-6 0.0993 5 16.0 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000159657 ENSMUSP00000123957 TRANSLATION protein_coding stop - 3 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000161877 - NO_TRANSLATION retained_intron ENSMUSG00000040669 Phc1 ENSMUST00000079560 ENSMUSP00000078514 TRANSLATION protein_coding - CCDS20494.1 1 1010.0 4.0 2.7 6.2 158.8 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000040669 Phc1 ENSMUST00000160163 ENSMUSP00000125545 TRANSLATION nonsense_mediated_decay - - 1 86.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000161149 ENSMUSP00000125717 TRANSLATION protein_coding stop - 5 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000159384 ENSMUSP00000124744 TRANSLATION protein_coding stop - 3 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000161210 ENSMUSP00000124795 TRANSLATION protein_coding stop - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040669 Phc1 ENSMUST00000112600 ENSMUSP00000108219 TRANSLATION protein_coding - CCDS39620.1 1 958.0 4.0 2.7 2.1 158.8 0.0 -4,-5 0.4916 6 16.424 MINOR ENSMUSG00000040370 Etfrf1 ENSMUST00000039729 ENSMUSP00000039433 TRANSLATION protein_coding - CCDS39706.1 1 86.0 0.0 1.5 31.2 51.2 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040370 Etfrf1 ENSMUST00000111721 ENSMUSP00000107350 TRANSLATION protein_coding - CCDS39706.1 1 86.0 0.0 1.5 31.2 51.2 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040370 Etfrf1 ENSMUST00000126007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040370 Etfrf1 ENSMUST00000111724 ENSMUSP00000107353 TRANSLATION protein_coding - CCDS39706.1 1 86.0 0.0 1.5 31.2 51.2 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040370 Etfrf1 ENSMUST00000111726 ENSMUSP00000107355 TRANSLATION protein_coding - CCDS39706.1 1 86.0 0.0 1.5 31.2 51.2 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040370 Etfrf1 ENSMUST00000111725 ENSMUSP00000107354 TRANSLATION protein_coding - CCDS39706.1 2 86.0 0.0 1.5 31.2 51.2 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040370 Etfrf1 ENSMUST00000111723 ENSMUSP00000107352 TRANSLATION protein_coding - CCDS39706.1 5 86.0 0.0 1.5 31.2 51.2 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040370 Etfrf1 ENSMUST00000111719 ENSMUSP00000107348 TRANSLATION protein_coding - CCDS39706.1 5 86.0 0.0 1.5 31.2 51.2 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000029919 Hpgds ENSMUST00000170252 - NO_TRANSLATION retained_intron ENSMUSG00000029919 Hpgds ENSMUST00000031982 ENSMUSP00000031982 TRANSLATION protein_coding - CCDS20205.1 1 199.0 11.0 5.0 22.5 92.9 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000029919 Hpgds ENSMUST00000205250 - NO_TRANSLATION retained_intron ENSMUSG00000030126 Tmcc1 ENSMUST00000173117 - NO_TRANSLATION retained_intron ENSMUSG00000030126 Tmcc1 ENSMUST00000173548 ENSMUSP00000145456 TRANSLATION protein_coding - - 5 470.0 0.0 0.0 10.5 557.1 2.0 -4,-5 0.8288 8 4.452 MINOR ENSMUSG00000030126 Tmcc1 ENSMUST00000173140 ENSMUSP00000134455 TRANSLATION protein_coding - - 5 329.0 0.0 0.0 6.3 393.1 2.0 -4,-5 0.1774 7 1.368 MINOR ENSMUSG00000030126 Tmcc1 ENSMUST00000088896 ENSMUSP00000086285 TRANSLATION protein_coding - CCDS51881.1 1 649.0 0.0 0.0 15.4 557.1 2.0 -4,-5 1.0 9 5.716 PRINCIPAL:3 ENSMUSG00000030126 Tmcc1 ENSMUST00000173031 ENSMUSP00000134148 TRANSLATION protein_coding - - 1 206.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 1 0.0 MINOR ENSMUSG00000030126 Tmcc1 ENSMUST00000173110 ENSMUSP00000133794 TRANSLATION nonsense_mediated_decay - - 1 191.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030126 Tmcc1 ENSMUST00000172909 ENSMUSP00000134407 TRANSLATION nonsense_mediated_decay start - 3 72.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000030126 Tmcc1 ENSMUST00000204574 - NO_TRANSLATION retained_intron ENSMUSG00000030126 Tmcc1 ENSMUST00000204637 - NO_TRANSLATION retained_intron ENSMUSG00000030126 Tmcc1 ENSMUST00000032222 ENSMUSP00000032222 TRANSLATION protein_coding start - 1 690.0 0.0 0.0 0.0 557.1 2.0 -4,-5 0.0844 9 -2.0 MINOR ENSMUSG00000030126 Tmcc1 ENSMUST00000204353 ENSMUSP00000144971 TRANSLATION protein_coding - - 1 474.0 0.0 0.0 16.5 557.1 2.0 -4,-1 0.9663 8 6.0 ALTERNATIVE:1 ENSMUSG00000030126 Tmcc1 ENSMUST00000205160 - NO_TRANSLATION retained_intron ENSMUSG00000030126 Tmcc1 ENSMUST00000172510 ENSMUSP00000133665 TRANSLATION protein_coding - - 1 329.0 0.0 0.0 6.3 393.1 2.0 -4,-5 0.1774 7 1.368 MINOR ENSMUSG00000053604 Rpia ENSMUST00000066134 ENSMUSP00000064158 TRANSLATION protein_coding - CCDS39504.1 1 303.0 13.0 6.9 5.4 219.8 0.0 -4,-2 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000053604 Rpia ENSMUST00000124633 - NO_TRANSLATION retained_intron ENSMUSG00000053604 Rpia ENSMUST00000129244 - NO_TRANSLATION retained_intron ENSMUSG00000029840 Mtpn ENSMUST00000031866 ENSMUSP00000031866 TRANSLATION protein_coding - CCDS20002.1 1 118.0 0.0 3.41 35.8 58.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000029840 Mtpn ENSMUST00000201026 ENSMUSP00000144482 TRANSLATION protein_coding stop - 3 73.0 0.0 2.0 0.0 33.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060780 Lrrtm1 ENSMUST00000161677 ENSMUSP00000124373 TRANSLATION protein_coding - CCDS39522.1 1 522.0 0.0 1.3 17.0 135.6 1.0 -1,-4 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000060780 Lrrtm1 ENSMUST00000161811 ENSMUSP00000124948 TRANSLATION protein_coding stop - 3 183.0 0.0 0.8 0.0 96.9 0.0 -1,-4 0.0 4 -2.0 MINOR ENSMUSG00000060780 Lrrtm1 ENSMUST00000020400 ENSMUSP00000020400 TRANSLATION nonsense_mediated_decay - CCDS39522.1 1 522.0 0.0 1.3 17.0 135.6 1.0 -1,-4 1.0 7 -2.0 MINOR ENSMUSG00000060780 Lrrtm1 ENSMUST00000159616 ENSMUSP00000125207 TRANSLATION protein_coding - CCDS39522.1 1 522.0 0.0 1.3 17.0 135.6 1.0 -1,-4 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000029869 Ephb6 ENSMUST00000167497 ENSMUSP00000132773 TRANSLATION protein_coding start - 2 46.0 0.0 0.0 0.0 34.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029869 Ephb6 ENSMUST00000114732 ENSMUSP00000110380 TRANSLATION protein_coding - CCDS20051.1 1 1014.0 0.0 12.29 5.6 649.4 0.0 1,-3 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000029869 Ephb6 ENSMUST00000170624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029869 Ephb6 ENSMUST00000167082 ENSMUSP00000133131 TRANSLATION nonsense_mediated_decay start - 5 130.0 0.0 0.6864 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000059182 Skap2 ENSMUST00000204178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059182 Skap2 ENSMUST00000204778 ENSMUSP00000145462 TRANSLATION protein_coding - CCDS20137.1 1 358.0 6.0 5.775 11.0 104.1 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000059182 Skap2 ENSMUST00000205112 - NO_TRANSLATION retained_intron ENSMUSG00000059182 Skap2 ENSMUST00000203313 - NO_TRANSLATION retained_intron ENSMUSG00000059182 Skap2 ENSMUST00000205174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059182 Skap2 ENSMUST00000203948 ENSMUSP00000145275 TRANSLATION protein_coding start/stop - 5 126.0 0.0 2.8 0.0 35.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000059182 Skap2 ENSMUST00000078214 ENSMUSP00000077342 TRANSLATION protein_coding - - 1 351.0 6.0 5.445 9.1 104.1 0.0 -4,-5 0.8019 9 19.77 MINOR ENSMUSG00000096580 Igkv1-132 ENSMUST00000103305 ENSMUSP00000100106 TRANSLATION IG_V_gene stop - - 120.0 0.0 1.0 0.0 59.8 0.0 4,-1 0.8251 - -2.0 PRINCIPAL:1 ENSMUSG00000029860 Zyx ENSMUST00000203401 ENSMUSP00000145236 TRANSLATION protein_coding - CCDS85034.1 1 533.0 22.0 3.9 0.0 137.6 0.0 -4,-2 0.3015 12 14.0 ALTERNATIVE:2 ENSMUSG00000029860 Zyx ENSMUST00000203652 ENSMUSP00000145451 TRANSLATION protein_coding - CCDS20066.1 1 564.0 22.0 3.9 1.2 137.6 0.0 -4,-2 1.0 12 15.0 PRINCIPAL:2 ENSMUSG00000029860 Zyx ENSMUST00000164375 ENSMUSP00000126622 TRANSLATION protein_coding - CCDS20066.1 1 564.0 22.0 3.9 1.2 137.6 0.0 -4,-2 1.0 12 15.0 PRINCIPAL:2 ENSMUSG00000029860 Zyx ENSMUST00000203846 ENSMUSP00000145189 TRANSLATION protein_coding stop - 3 212.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0012 1 -2.0 MINOR ENSMUSG00000029860 Zyx ENSMUST00000203329 ENSMUSP00000144863 TRANSLATION protein_coding stop - 3 137.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000029860 Zyx ENSMUST00000203290 - NO_TRANSLATION retained_intron ENSMUSG00000029860 Zyx ENSMUST00000204480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029860 Zyx ENSMUST00000203849 ENSMUSP00000145052 TRANSLATION protein_coding stop - 2 109.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000029860 Zyx ENSMUST00000203626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029860 Zyx ENSMUST00000204270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029860 Zyx ENSMUST00000070635 ENSMUSP00000070427 TRANSLATION protein_coding - CCDS85034.1 1 533.0 22.0 3.9 0.0 137.6 0.0 -4,-2 0.3015 12 14.0 ALTERNATIVE:2 ENSMUSG00000052581 Lrrtm4 ENSMUST00000074662 ENSMUSP00000074232 TRANSLATION protein_coding - CCDS20259.2 2 518.0 0.0 2.3 10.4 161.7 1.0 2,-3 0.8135 5 9.388 MINOR ENSMUSG00000052581 Lrrtm4 ENSMUST00000147663 ENSMUSP00000117263 TRANSLATION protein_coding - CCDS71778.1 1 591.0 0.0 2.3 19.9 165.9 1.0 2,-3 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000052581 Lrrtm4 ENSMUST00000128718 ENSMUSP00000114425 TRANSLATION protein_coding stop - 2 49.0 0.0 0.5 0.0 0.0 0.0 2,-3 0.0015 - -2.0 MINOR ENSMUSG00000052581 Lrrtm4 ENSMUST00000133918 ENSMUSP00000115016 TRANSLATION protein_coding - - 5 590.0 0.0 2.3 19.9 165.9 1.0 2,-3 0.8612 6 12.0 ALTERNATIVE:1 ENSMUSG00000052581 Lrrtm4 ENSMUST00000126005 ENSMUSP00000117445 TRANSLATION protein_coding - CCDS20259.2 5 518.0 0.0 2.3 10.4 161.7 1.0 2,-3 0.8135 5 9.388 MINOR ENSMUSG00000052581 Lrrtm4 ENSMUST00000145407 ENSMUSP00000114465 TRANSLATION protein_coding stop - 2 104.0 0.0 1.5 0.0 31.4 0.0 2,-3 0.0008 1 -2.0 MINOR ENSMUSG00000052581 Lrrtm4 ENSMUST00000136421 ENSMUSP00000121621 TRANSLATION protein_coding - CCDS71779.1 1 519.0 0.0 2.3 10.4 161.7 1.0 2,-3 0.8141 5 9.388 MINOR ENSMUSG00000052581 Lrrtm4 ENSMUST00000126399 ENSMUSP00000121124 TRANSLATION protein_coding - - 5 590.0 0.0 2.3 19.9 165.9 1.0 2,-3 0.8612 6 12.0 ALTERNATIVE:1 ENSMUSG00000076488 Trbj1-6 ENSMUST00000103289 ENSMUSP00000141680 TRANSLATION TR_J_gene start/stop - - 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000030075 Cntn3 ENSMUST00000203619 ENSMUSP00000145176 TRANSLATION protein_coding - CCDS39581.1 1 1028.0 0.0 19.75 8.7 368.3 0.0 3,-2 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000030075 Cntn3 ENSMUST00000032159 ENSMUSP00000032159 TRANSLATION protein_coding - CCDS39581.1 2 1028.0 0.0 19.75 8.7 368.3 0.0 3,-2 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000030075 Cntn3 ENSMUST00000204990 - NO_TRANSLATION retained_intron ENSMUSG00000042599 Kdm7a ENSMUST00000127036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042599 Kdm7a ENSMUST00000002305 ENSMUSP00000002305 TRANSLATION protein_coding - CCDS51753.1 1 940.0 21.0 10.3 0.0 72.8 0.0 -2,0 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000034063 4930590J08Rik ENSMUST00000205569 ENSMUSP00000145930 TRANSLATION protein_coding start - 5 60.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000034063 4930590J08Rik ENSMUST00000205686 ENSMUSP00000146101 TRANSLATION protein_coding - CCDS51853.1 1 933.0 0.0 0.0 0.0 217.7 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000034063 4930590J08Rik ENSMUST00000205974 - NO_TRANSLATION retained_intron ENSMUSG00000030149 Klrk1 ENSMUST00000152256 - NO_TRANSLATION retained_intron ENSMUSG00000030149 Klrk1 ENSMUST00000168919 ENSMUSP00000130398 TRANSLATION protein_coding - CCDS71846.1 1 225.0 0.0 3.768 0.0 67.0 3.0 -4,-5 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000030149 Klrk1 ENSMUST00000095412 ENSMUSP00000093061 TRANSLATION protein_coding - CCDS39661.1 1 219.0 0.0 3.57 0.1 67.0 3.0 -4,-6 0.2542 1 7.604 ALTERNATIVE:2 ENSMUSG00000030149 Klrk1 ENSMUST00000204694 - NO_TRANSLATION retained_intron ENSMUSG00000030149 Klrk1 ENSMUST00000137660 - NO_TRANSLATION retained_intron ENSMUSG00000030149 Klrk1 ENSMUST00000032252 ENSMUSP00000032252 TRANSLATION protein_coding - CCDS39660.1 1 232.0 0.0 3.57 0.1 67.0 3.0 -4,-6 0.2293 1 7.604 ALTERNATIVE:2 ENSMUSG00000094553 Vmn1r50 ENSMUST00000089417 ENSMUSP00000100705 TRANSLATION protein_coding - CCDS20352.1 2 310.0 0.0 0.0 0.1 449.3 6.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094553 Vmn1r50 ENSMUST00000081706 ENSMUSP00000080407 TRANSLATION protein_coding - CCDS20352.1 - 310.0 0.0 0.0 0.1 449.3 6.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094553 Vmn1r50 ENSMUST00000226577 ENSMUSP00000154560 TRANSLATION protein_coding - CCDS20352.1 - 310.0 0.0 0.0 0.1 449.3 6.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043162 Pyurf ENSMUST00000053386 ENSMUSP00000050958 TRANSLATION protein_coding,RT - CCDS20184.1 1 112.0 0.0 1.5 11.8 31.4 0.0 -2,2 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000006269 Atp6v1b1 ENSMUST00000006431 ENSMUSP00000006431 TRANSLATION protein_coding - CCDS20283.1 1 513.0 0.0 12.45 12.8 267.4 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000006269 Atp6v1b1 ENSMUST00000205867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006269 Atp6v1b1 ENSMUST00000206652 - NO_TRANSLATION retained_intron ENSMUSG00000006269 Atp6v1b1 ENSMUST00000206052 - NO_TRANSLATION retained_intron ENSMUSG00000006269 Atp6v1b1 ENSMUST00000206911 ENSMUSP00000146154 TRANSLATION protein_coding - - 1 68.0 0.0 0.7 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000006269 Atp6v1b1 ENSMUST00000205763 ENSMUSP00000145710 TRANSLATION protein_coding start/stop - 5 215.0 0.0 4.78 0.0 62.7 0.0 -4,-5 0.0005 5 -2.0 MINOR ENSMUSG00000044086 Lmod3 ENSMUST00000095655 ENSMUSP00000093315 TRANSLATION protein_coding - CCDS39576.1 1 571.0 0.0 0.4 2.8 38.1 0.0 -4,-5 1.0 15 13.0 PRINCIPAL:1 ENSMUSG00000004633 Chn2 ENSMUST00000204410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004633 Chn2 ENSMUST00000138930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004633 Chn2 ENSMUST00000114403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004633 Chn2 ENSMUST00000133315 ENSMUSP00000145072 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004633 Chn2 ENSMUST00000114401 ENSMUSP00000110043 TRANSLATION protein_coding - CCDS80536.1 1 277.0 8.0 5.95 6.7 232.0 0.0 -4,-2 0.1503 5 11.1 MINOR ENSMUSG00000004633 Chn2 ENSMUST00000046856 ENSMUSP00000035908 TRANSLATION protein_coding - CCDS51778.1 1 468.0 8.0 8.46 28.1 277.3 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000004633 Chn2 ENSMUST00000204921 ENSMUSP00000145231 TRANSLATION protein_coding - - 5 286.0 8.0 4.95 1.7 136.4 0.0 -4,-5 0.0263 3 6.104 MINOR ENSMUSG00000004633 Chn2 ENSMUST00000146114 ENSMUSP00000114476 TRANSLATION protein_coding - CCDS80535.1 1 282.0 8.0 6.016 0.0 232.0 0.0 -4,0 0.0098 5 10.392 MINOR ENSMUSG00000004633 Chn2 ENSMUST00000067741 ENSMUSP00000066078 TRANSLATION protein_coding - CCDS20154.1 1 332.0 8.0 5.95 7.1 232.0 0.0 -4,-5 0.1379 5 11.16 MINOR ENSMUSG00000004633 Chn2 ENSMUST00000127323 ENSMUSP00000118990 TRANSLATION protein_coding stop - 3 103.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004633 Chn2 ENSMUST00000114402 ENSMUSP00000110044 TRANSLATION protein_coding stop - 1 225.0 8.0 4.95 0.0 188.2 0.0 -4,-2 0.0004 5 -2.0 MINOR ENSMUSG00000004633 Chn2 ENSMUST00000204746 ENSMUSP00000144983 TRANSLATION protein_coding - - 5 274.0 3.0 4.95 4.1 184.5 0.0 -4,-5 0.0406 4 3.138 MINOR ENSMUSG00000004633 Chn2 ENSMUST00000203941 ENSMUSP00000145314 TRANSLATION protein_coding - - 5 228.0 3.0 3.95 1.0 107.0 0.0 -4,-5 0.0018 2 2.25 MINOR ENSMUSG00000004633 Chn2 ENSMUST00000204115 ENSMUSP00000145507 TRANSLATION protein_coding - - 5 260.0 8.0 4.2 1.0 139.2 0.0 -4,-5 0.0048 2 6.0 MINOR ENSMUSG00000004633 Chn2 ENSMUST00000203091 ENSMUSP00000145008 TRANSLATION protein_coding - - 5 197.0 8.0 2.95 0.0 96.1 0.0 -4,-5 0.0 2 6.0 MINOR ENSMUSG00000030201 Lrp6 ENSMUST00000032322 ENSMUSP00000032322 TRANSLATION protein_coding - CCDS39678.1 1 1613.0 17.0 17.04 25.0 671.5 0.0 3,-4 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000030201 Lrp6 ENSMUST00000111950 - NO_TRANSLATION retained_intron ENSMUSG00000030201 Lrp6 ENSMUST00000203235 - NO_TRANSLATION retained_intron ENSMUSG00000030201 Lrp6 ENSMUST00000126836 ENSMUSP00000144733 TRANSLATION protein_coding stop - 5 131.0 0.0 2.0 0.0 83.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030201 Lrp6 ENSMUST00000203016 - NO_TRANSLATION retained_intron ENSMUSG00000030201 Lrp6 ENSMUST00000203773 - NO_TRANSLATION retained_intron ENSMUSG00000076569 Igkv5-39 ENSMUST00000197290 ENSMUSP00000142521 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 61.3 0.0 2,-2 0.8257 2 -2.0 PRINCIPAL:5 ENSMUSG00000076569 Igkv5-39 ENSMUST00000103370 ENSMUSP00000100171 TRANSLATION IG_V_gene start/stop - - 95.0 0.0 1.0 0.0 61.3 0.0 -4,-6 0.0557 2 -2.0 ALTERNATIVE:2 ENSMUSG00000115701 Vmn1r6 ENSMUST00000228285 ENSMUSP00000153988 TRANSLATION protein_coding - CCDS20173.1 - 303.0 0.0 0.0 0.4 178.3 9.0 -3,-5 0.2275 - 2.0 ALTERNATIVE:2 ENSMUSG00000115701 Vmn1r6 ENSMUST00000227188 ENSMUSP00000153914 TRANSLATION protein_coding - - - 281.0 0.0 0.0 0.0 179.5 8.0 -4,-7 0.7391 - 2.0 PRINCIPAL:2 ENSMUSG00000115701 Vmn1r6 ENSMUST00000227847 ENSMUSP00000154306 TRANSLATION protein_coding - CCDS20173.1 - 303.0 0.0 0.0 0.4 178.3 9.0 -3,-5 0.2275 - 2.0 ALTERNATIVE:2 ENSMUSG00000115701 Vmn1r6 ENSMUST00000227131 ENSMUSP00000153994 TRANSLATION protein_coding - CCDS20173.1 - 303.0 0.0 0.0 0.4 178.3 9.0 -3,-5 0.2275 - 2.0 ALTERNATIVE:2 ENSMUSG00000115701 Vmn1r6 ENSMUST00000227631 ENSMUSP00000154199 TRANSLATION protein_coding - - - 281.0 0.0 0.0 0.0 179.5 8.0 -4,-7 0.7391 - 2.0 PRINCIPAL:2 ENSMUSG00000115701 Vmn1r6 ENSMUST00000226689 ENSMUSP00000154450 TRANSLATION protein_coding - CCDS20173.1 - 303.0 0.0 0.0 0.4 178.3 9.0 -3,-5 0.2275 - 2.0 ALTERNATIVE:2 ENSMUSG00000115701 Vmn1r6 ENSMUST00000079669 ENSMUSP00000078611 TRANSLATION protein_coding - CCDS20173.1 - 303.0 0.0 0.0 0.4 178.3 9.0 -3,-5 0.2275 - 2.0 ALTERNATIVE:2 ENSMUSG00000067599 Klra7 ENSMUST00000112013 ENSMUSP00000107644 TRANSLATION protein_coding - CCDS51928.1 5 280.0 3.0 4.9 0.0 250.8 1.0 -4,-7 0.226 - 10.0 ALTERNATIVE:2 ENSMUSG00000067599 Klra7 ENSMUST00000088011 ENSMUSP00000085326 TRANSLATION protein_coding - CCDS39668.1 1 267.0 3.0 4.8 0.1 259.2 1.0 -4,-7 1.0 - 10.802 PRINCIPAL:2 ENSMUSG00000067599 Klra7 ENSMUST00000049304 ENSMUSP00000037917 TRANSLATION protein_coding - CCDS39668.1 1 267.0 3.0 4.8 0.1 259.2 1.0 -4,-7 1.0 - 10.802 PRINCIPAL:2 ENSMUSG00000067599 Klra7 ENSMUST00000032286 ENSMUSP00000032286 TRANSLATION protein_coding - CCDS51928.1 1 280.0 3.0 4.9 0.0 250.8 1.0 -4,-7 0.226 - 10.0 ALTERNATIVE:2 ENSMUSG00000029632 Ndufa4 ENSMUST00000031637 ENSMUSP00000031637 TRANSLATION protein_coding - - 3 49.0 0.0 1.58 0.0 75.1 0.0 -4,-5 0.0 7 7.062 MINOR ENSMUSG00000029632 Ndufa4 ENSMUST00000204978 ENSMUSP00000144932 TRANSLATION protein_coding - CCDS39427.1 1 82.0 0.0 2.58 36.9 118.6 1.0 -1,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000029632 Ndufa4 ENSMUST00000204714 ENSMUSP00000145413 TRANSLATION protein_coding - CCDS39427.1 3 82.0 0.0 2.58 36.9 118.6 1.0 -1,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000029632 Ndufa4 ENSMUST00000203801 - NO_TRANSLATION retained_intron ENSMUSG00000029632 Ndufa4 ENSMUST00000204084 ENSMUSP00000145197 TRANSLATION protein_coding - - 3 49.0 0.0 1.58 0.0 75.1 0.0 -4,-5 0.0 7 7.062 MINOR ENSMUSG00000033735 Spr ENSMUST00000174286 ENSMUSP00000133859 TRANSLATION protein_coding - - 2 219.0 23.0 3.75 0.0 33.6 0.0 -3,-1 0.0002 13 8.85 MINOR ENSMUSG00000033735 Spr ENSMUST00000174769 ENSMUSP00000134379 TRANSLATION protein_coding - - 1 126.0 15.0 1.15 0.0 36.5 0.0 -3,-1 0.0 7 2.376 MINOR ENSMUSG00000033735 Spr ENSMUST00000045986 ENSMUSP00000048111 TRANSLATION protein_coding - CCDS51826.1 1 262.0 28.0 4.75 6.8 92.2 0.0 -3,-1 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000033735 Spr ENSMUST00000204757 ENSMUSP00000145412 TRANSLATION nonsense_mediated_decay - CCDS51826.1 5 262.0 28.0 4.75 6.8 92.2 0.0 -3,-1 1.0 14 -2.0 MINOR ENSMUSG00000115404 Vmn1r31 ENSMUST00000226390 ENSMUSP00000154691 TRANSLATION protein_coding - CCDS51798.1 - 303.0 0.0 0.0 0.4 184.8 7.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115404 Vmn1r31 ENSMUST00000176147 ENSMUSP00000135282 TRANSLATION protein_coding - - 3 254.0 0.0 0.0 0.0 170.9 5.0 -3,-6 0.0194 - 0.0 MINOR ENSMUSG00000115404 Vmn1r31 ENSMUST00000176023 ENSMUSP00000135252 TRANSLATION protein_coding - - 2 254.0 0.0 0.0 0.0 170.9 5.0 -3,-6 0.0194 - 0.0 MINOR ENSMUSG00000115404 Vmn1r31 ENSMUST00000177318 ENSMUSP00000135555 TRANSLATION protein_coding - CCDS51798.1 2 303.0 0.0 0.0 0.4 184.8 7.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115404 Vmn1r31 ENSMUST00000228586 ENSMUSP00000153749 TRANSLATION protein_coding - CCDS51798.1 - 303.0 0.0 0.0 0.4 184.8 7.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000057278 Snrpg ENSMUST00000089558 ENSMUSP00000086987 TRANSLATION protein_coding - CCDS39541.1 1 76.0 5.0 2.16 34.9 80.0 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000057278 Snrpg ENSMUST00000204768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057278 Snrpg ENSMUST00000204380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057278 Snrpg ENSMUST00000203782 - NO_TRANSLATION retained_intron ENSMUSG00000076538 Igkv13-84 ENSMUST00000103339 ENSMUSP00000100140 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 53.3 0.0 3,-2 0.824 1 -2.0 PRINCIPAL:1 ENSMUSG00000095668 Trbd1 ENSMUST00000178537 ENSMUSP00000141764 TRANSLATION TR_D_gene start/stop - - 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000054106 Try4 ENSMUST00000031913 ENSMUSP00000031913 TRANSLATION protein_coding - CCDS20044.1 1 246.0 25.0 4.0 33.9 272.6 0.0 4,-1 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000071147 Tas2r140 ENSMUST00000095391 ENSMUSP00000093040 TRANSLATION protein_coding - CCDS20633.1 - 312.0 0.0 0.0 0.4 281.7 0.0 -1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000029788 Cpa5 ENSMUST00000165949 ENSMUSP00000126436 TRANSLATION nonsense_mediated_decay - - 1 309.0 5.0 6.75 0.0 226.6 0.0 -1,-4 0.001 1 -2.0 MINOR ENSMUSG00000029788 Cpa5 ENSMUST00000115139 ENSMUSP00000110792 TRANSLATION protein_coding - CCDS19976.1 1 436.0 8.0 10.91 6.3 376.3 0.0 -1,-4 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000029788 Cpa5 ENSMUST00000115138 ENSMUSP00000110791 TRANSLATION protein_coding - - 5 399.0 6.0 8.7 0.7 311.4 0.0 -1,-4 0.0077 1 8.184 MINOR ENSMUSG00000029788 Cpa5 ENSMUST00000062758 ENSMUSP00000057722 TRANSLATION protein_coding - CCDS19976.1 1 436.0 8.0 10.91 6.3 376.3 0.0 -1,-4 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000057137 Tmem140 ENSMUST00000202010 ENSMUSP00000144511 TRANSLATION protein_coding stop - 2 21.0 0.0 0.45 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000057137 Tmem140 ENSMUST00000202999 ENSMUSP00000144113 TRANSLATION protein_coding stop - 3 62.0 0.0 1.45 0.0 90.4 1.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000057137 Tmem140 ENSMUST00000074949 ENSMUSP00000074482 TRANSLATION protein_coding - CCDS19996.1 1 185.0 0.0 2.45 5.5 301.4 4.0 -1,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000057137 Tmem140 ENSMUST00000201749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057137 Tmem140 ENSMUST00000202764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057137 Tmem140 ENSMUST00000123019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030352 Tspan9 ENSMUST00000032503 ENSMUSP00000032503 TRANSLATION protein_coding - CCDS20568.1 1 239.0 0.0 6.48 34.2 191.1 10.0 -1,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030352 Tspan9 ENSMUST00000145940 ENSMUSP00000144650 TRANSLATION protein_coding stop - 5 21.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030352 Tspan9 ENSMUST00000146268 ENSMUSP00000116142 TRANSLATION protein_coding stop - 3 125.0 0.0 4.08 0.0 101.7 9.0 -1,-5 0.0021 - -2.0 MINOR ENSMUSG00000030352 Tspan9 ENSMUST00000202372 ENSMUSP00000143827 TRANSLATION protein_coding stop - 5 167.0 0.0 5.33 0.0 143.8 9.0 -1,-5 0.0034 2 -2.0 MINOR ENSMUSG00000030352 Tspan9 ENSMUST00000112171 ENSMUSP00000107794 TRANSLATION protein_coding - CCDS20568.1 1 239.0 0.0 6.48 34.2 191.1 10.0 -1,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030352 Tspan9 ENSMUST00000154375 ENSMUSP00000114763 TRANSLATION protein_coding stop - 3 127.0 0.0 4.08 0.0 101.7 9.0 -1,-5 0.0021 - -2.0 MINOR ENSMUSG00000030352 Tspan9 ENSMUST00000202141 - NO_TRANSLATION retained_intron ENSMUSG00000030352 Tspan9 ENSMUST00000112173 ENSMUSP00000107796 TRANSLATION protein_coding - CCDS20568.1 1 239.0 0.0 6.48 34.2 191.1 10.0 -1,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030352 Tspan9 ENSMUST00000127075 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030352 Tspan9 ENSMUST00000127105 ENSMUSP00000115324 TRANSLATION protein_coding stop - 3 56.0 0.0 1.75 0.0 33.7 3.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000030352 Tspan9 ENSMUST00000123786 ENSMUSP00000115922 TRANSLATION protein_coding stop - 3 263.0 0.0 5.33 0.0 149.8 9.0 -4,-5 0.0036 3 -2.0 MINOR ENSMUSG00000056926 Tas2r113 ENSMUST00000079035 ENSMUSP00000078044 TRANSLATION protein_coding - CCDS20627.1 - 309.0 0.0 0.1 0.1 254.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040797 Iqsec3 ENSMUST00000152103 ENSMUSP00000116317 TRANSLATION nonsense_mediated_decay - - 1 211.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040797 Iqsec3 ENSMUST00000151397 ENSMUSP00000145523 TRANSLATION protein_coding - - 2 722.0 0.0 1.6 0.0 44.0 0.0 -4,-5 0.0067 13 0.0 MINOR ENSMUSG00000040797 Iqsec3 ENSMUST00000046373 ENSMUSP00000038653 TRANSLATION protein_coding - CCDS20491.1 1 1195.0 0.0 7.4 0.0 391.0 0.0 -4,-5 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000040797 Iqsec3 ENSMUST00000129815 ENSMUSP00000120847 TRANSLATION nonsense_mediated_decay - - 1 211.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000005069 Pex5 ENSMUST00000080557 ENSMUSP00000079398 TRANSLATION protein_coding - CCDS20518.1 1 602.0 0.0 6.15 14.0 61.3 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:3 ENSMUSG00000005069 Pex5 ENSMUST00000035861 ENSMUSP00000049132 TRANSLATION protein_coding - CCDS20517.1 1 639.0 0.0 6.15 11.8 61.3 0.0 -4,-5 0.9406 16 11.324 ALTERNATIVE:1 ENSMUSG00000005069 Pex5 ENSMUST00000150899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005069 Pex5 ENSMUST00000156415 - NO_TRANSLATION retained_intron ENSMUSG00000005069 Pex5 ENSMUST00000112532 ENSMUSP00000108151 TRANSLATION protein_coding - CCDS20517.1 1 639.0 0.0 6.15 11.8 61.3 0.0 -4,-5 0.9406 16 11.324 ALTERNATIVE:1 ENSMUSG00000005069 Pex5 ENSMUST00000112531 ENSMUSP00000108150 TRANSLATION protein_coding - CCDS20518.1 1 602.0 0.0 6.15 14.0 61.3 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:3 ENSMUSG00000005069 Pex5 ENSMUST00000112530 ENSMUSP00000108149 TRANSLATION protein_coding - - 5 632.0 0.0 6.15 1.3 61.3 0.0 -4,-5 0.2194 16 8.092 MINOR ENSMUSG00000005069 Pex5 ENSMUST00000150812 - NO_TRANSLATION retained_intron ENSMUSG00000029998 Pcyox1 ENSMUST00000131500 ENSMUSP00000122602 TRANSLATION protein_coding start/stop - 3 197.0 4.0 1.48 0.0 202.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000029998 Pcyox1 ENSMUST00000204116 ENSMUSP00000145474 TRANSLATION protein_coding - - 5 148.0 16.0 1.63 0.0 46.4 0.0 3,-2 0.0009 3 1.998 MINOR ENSMUSG00000029998 Pcyox1 ENSMUST00000153723 ENSMUSP00000119449 TRANSLATION protein_coding stop - 2 214.0 2.0 3.25 0.0 228.0 0.0 3,-2 0.0 5 -2.0 MINOR ENSMUSG00000029998 Pcyox1 ENSMUST00000203960 - NO_TRANSLATION retained_intron ENSMUSG00000029998 Pcyox1 ENSMUST00000129650 - NO_TRANSLATION retained_intron ENSMUSG00000029998 Pcyox1 ENSMUST00000032065 ENSMUSP00000032065 TRANSLATION protein_coding - CCDS20311.1 1 505.0 22.0 5.19 6.4 556.0 0.0 3,-2 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000006906 Stambp ENSMUST00000205369 - NO_TRANSLATION retained_intron ENSMUSG00000006906 Stambp ENSMUST00000205829 - NO_TRANSLATION retained_intron ENSMUSG00000006906 Stambp ENSMUST00000206592 ENSMUSP00000146294 TRANSLATION protein_coding - CCDS20280.1 1 424.0 8.0 7.25 15.0 140.7 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000006906 Stambp ENSMUST00000205648 - NO_TRANSLATION retained_intron ENSMUSG00000006906 Stambp ENSMUST00000206400 ENSMUSP00000145871 TRANSLATION protein_coding - CCDS20280.1 1 424.0 8.0 7.25 15.0 140.7 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000006906 Stambp ENSMUST00000205345 - NO_TRANSLATION retained_intron ENSMUSG00000006906 Stambp ENSMUST00000068054 ENSMUSP00000070876 TRANSLATION protein_coding - CCDS20280.1 1 424.0 8.0 7.25 15.0 140.7 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000029813 Aoc1l2 ENSMUST00000031837 ENSMUSP00000031837 TRANSLATION protein_coding - CCDS39484.2 1 711.0 14.0 3.8 0.0 431.0 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000029790 Cep41 ENSMUST00000133373 ENSMUSP00000116240 TRANSLATION protein_coding stop - 3 74.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029790 Cep41 ENSMUST00000132763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029790 Cep41 ENSMUST00000140252 ENSMUSP00000145510 TRANSLATION protein_coding stop - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029790 Cep41 ENSMUST00000115131 ENSMUSP00000110784 TRANSLATION protein_coding - - 5 301.0 0.0 0.6145 1.0 40.7 0.0 -4,-2 0.1769 5 11.664 MINOR ENSMUSG00000029790 Cep41 ENSMUST00000153107 - NO_TRANSLATION retained_intron ENSMUSG00000029790 Cep41 ENSMUST00000169422 ENSMUSP00000128707 TRANSLATION protein_coding - - 3 103.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000029790 Cep41 ENSMUST00000140211 ENSMUSP00000138696 TRANSLATION nonsense_mediated_decay - - 1 106.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029790 Cep41 ENSMUST00000115130 ENSMUSP00000110783 TRANSLATION protein_coding - - 1 43.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000029790 Cep41 ENSMUST00000146951 - NO_TRANSLATION retained_intron ENSMUSG00000029790 Cep41 ENSMUST00000031810 ENSMUSP00000031810 TRANSLATION protein_coding - CCDS19978.1 1 373.0 0.0 0.6145 17.0 43.1 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000029924 Slc37a3 ENSMUST00000201448 ENSMUSP00000144059 TRANSLATION nonsense_mediated_decay - - 2 156.0 0.0 0.798 0.0 0.0 5.0 0,-5 0.0084 - -2.0 MINOR ENSMUSG00000029924 Slc37a3 ENSMUST00000202749 ENSMUSP00000144636 TRANSLATION protein_coding - - 5 83.0 0.0 0.0 0.0 0.0 3.0 0,-4 0.0021 - 0.0 MINOR ENSMUSG00000029924 Slc37a3 ENSMUST00000202785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029924 Slc37a3 ENSMUST00000201208 - NO_TRANSLATION retained_intron ENSMUSG00000029924 Slc37a3 ENSMUST00000200961 ENSMUSP00000144562 TRANSLATION nonsense_mediated_decay - - 1 156.0 0.0 0.798 0.0 0.0 5.0 0,-5 0.0084 - -2.0 MINOR ENSMUSG00000029924 Slc37a3 ENSMUST00000202952 ENSMUSP00000144280 TRANSLATION protein_coding stop - 1 27.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000029924 Slc37a3 ENSMUST00000202204 ENSMUSP00000144316 TRANSLATION protein_coding stop - 3 92.0 0.0 0.0 0.0 0.0 3.0 0,-5 0.005 - -2.0 MINOR ENSMUSG00000029924 Slc37a3 ENSMUST00000202656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029924 Slc37a3 ENSMUST00000200771 ENSMUSP00000143953 TRANSLATION protein_coding stop - 3 84.0 0.0 0.0 0.0 0.0 3.0 0,-5 0.0031 - -2.0 MINOR ENSMUSG00000029924 Slc37a3 ENSMUST00000090243 ENSMUSP00000087709 TRANSLATION protein_coding - CCDS20020.1 1 494.0 0.0 1.41175 11.0 118.9 17.0 0,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029924 Slc37a3 ENSMUST00000202400 ENSMUSP00000144557 TRANSLATION protein_coding stop - 3 173.0 0.0 0.798 0.0 36.4 9.0 0,-5 0.005 - -2.0 MINOR ENSMUSG00000029924 Slc37a3 ENSMUST00000200969 ENSMUSP00000144244 TRANSLATION protein_coding stop - 5 83.0 0.0 0.0 0.0 0.0 3.0 0,-5 0.0031 - -2.0 MINOR ENSMUSG00000029924 Slc37a3 ENSMUST00000202714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029924 Slc37a3 ENSMUST00000202928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029861 Fam131b ENSMUST00000031891 ENSMUSP00000031891 TRANSLATION protein_coding - CCDS51758.1 1 348.0 0.0 1.0 2.1 374.7 0.0 -4,-5 0.5246 6 12.392 MINOR ENSMUSG00000029861 Fam131b ENSMUST00000095974 ENSMUSP00000093670 TRANSLATION protein_coding - CCDS71759.1 1 332.0 0.0 1.0 2.0 374.7 0.0 -4,-6 0.4272 5 12.358 MINOR ENSMUSG00000029861 Fam131b ENSMUST00000143278 ENSMUSP00000116779 TRANSLATION protein_coding - CCDS39472.2 1 360.0 0.0 1.0 6.6 374.7 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000090685 Atp6v1fnb ENSMUST00000171317 ENSMUSP00000127891 TRANSLATION protein_coding - CCDS51737.1 1 177.0 0.0 0.0 7.8 0.0 0.0 -4,-5 1.0 2 2.0 PRINCIPAL:1 ENSMUSG00000037159 Wee2 ENSMUST00000141490 ENSMUSP00000122678 TRANSLATION protein_coding stop - 2 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037159 Wee2 ENSMUST00000038907 ENSMUSP00000038754 TRANSLATION protein_coding - CCDS20029.1 1 555.0 18.0 5.79 0.1 169.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000037159 Wee2 ENSMUST00000202464 ENSMUSP00000144628 TRANSLATION protein_coding stop - 3 209.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000047104 Pbp2 ENSMUST00000050471 ENSMUSP00000098414 TRANSLATION protein_coding - CCDS20646.1 - 187.0 12.0 1.0 34.7 0.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000051936 Prss58 ENSMUST00000063523 ENSMUSP00000069833 TRANSLATION protein_coding - CCDS20040.1 1 241.0 4.0 4.0 6.2 131.7 0.0 4,-1 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000096833 Igkv4-55 ENSMUST00000103359 ENSMUSP00000100160 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 62.9 0.0 0,-3 0.7904 1 -2.0 PRINCIPAL:1 ENSMUSG00000076495 Trbj2-4 ENSMUST00000103296 ENSMUSP00000142246 TRANSLATION TR_J_gene start/stop - - 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000043131 Mob1a ENSMUST00000101245 ENSMUSP00000098802 TRANSLATION nonsense_mediated_decay - CCDS39533.1 1 216.0 4.0 5.35 34.9 282.4 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000043131 Mob1a ENSMUST00000055261 ENSMUSP00000054452 TRANSLATION protein_coding - CCDS39533.1 1 216.0 4.0 5.35 34.9 282.4 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000043131 Mob1a ENSMUST00000146420 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043131 Mob1a ENSMUST00000038658 ENSMUSP00000039115 TRANSLATION protein_coding - - 1 140.0 2.0 3.35 0.0 100.6 0.0 -4,-7 0.0 - 3.998 MINOR ENSMUSG00000043131 Mob1a ENSMUST00000133045 ENSMUSP00000144795 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0019 - -2.0 MINOR ENSMUSG00000043131 Mob1a ENSMUST00000155580 ENSMUSP00000144927 TRANSLATION protein_coding stop - 3 46.0 2.0 1.5 0.0 78.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029859 Epha1 ENSMUST00000204357 ENSMUSP00000144763 TRANSLATION protein_coding - - 5 945.0 14.0 12.45 0.0 623.9 1.0 4,-1 0.0753 4 7.338 MINOR ENSMUSG00000029859 Epha1 ENSMUST00000204238 - NO_TRANSLATION retained_intron ENSMUSG00000029859 Epha1 ENSMUST00000073387 ENSMUSP00000073099 TRANSLATION protein_coding - CCDS20067.1 1 977.0 18.0 13.45 4.5 726.9 1.0 4,-1 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000025607 Copg2 ENSMUST00000166192 ENSMUSP00000126726 TRANSLATION protein_coding - - 1 870.0 0.0 20.0 36.2 784.6 0.0 -4,-5 0.8374 21 12.0 ALTERNATIVE:1 ENSMUSG00000025607 Copg2 ENSMUST00000048774 ENSMUSP00000038368 TRANSLATION protein_coding - CCDS85027.1 1 871.0 0.0 20.0 36.2 793.7 0.0 -4,-5 1.0 21 12.0 PRINCIPAL:4 ENSMUSG00000025607 Copg2 ENSMUST00000135230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025607 Copg2 ENSMUST00000122833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025607 Copg2 ENSMUST00000134137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025607 Copg2 ENSMUST00000131256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025607 Copg2 ENSMUST00000133916 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025607 Copg2 ENSMUST00000151973 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039904 Gpr37 ENSMUST00000200812 ENSMUSP00000144683 TRANSLATION protein_coding - - 1 440.0 0.0 0.5 0.0 88.4 5.0 3,-3 0.0121 2 9.204 MINOR ENSMUSG00000039904 Gpr37 ENSMUST00000054867 ENSMUSP00000052185 TRANSLATION protein_coding - CCDS19949.1 1 600.0 0.0 0.66 1.1 110.8 8.0 3,-3 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000094669 Or2a54 ENSMUST00000095954 ENSMUSP00000093648 TRANSLATION protein_coding - CCDS20086.1 - 310.0 0.0 1.0 12.5 200.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094669 Or2a54 ENSMUST00000213649 ENSMUSP00000150572 TRANSLATION protein_coding - CCDS20086.1 3 310.0 0.0 1.0 12.5 200.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030347 D6Wsu163e ENSMUST00000201617 ENSMUSP00000144570 TRANSLATION protein_coding stop - 3 83.0 0.0 0.0 0.0 29.8 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000030347 D6Wsu163e ENSMUST00000202964 - NO_TRANSLATION retained_intron ENSMUSG00000030347 D6Wsu163e ENSMUST00000032497 ENSMUSP00000032497 TRANSLATION protein_coding - CCDS20560.1 1 552.0 0.0 0.0 24.1 714.5 0.0 -4,-7 1.0 11 10.0 PRINCIPAL:1 ENSMUSG00000030347 D6Wsu163e ENSMUST00000201113 - NO_TRANSLATION retained_intron ENSMUSG00000030347 D6Wsu163e ENSMUST00000202086 - NO_TRANSLATION retained_intron ENSMUSG00000030347 D6Wsu163e ENSMUST00000201520 - NO_TRANSLATION retained_intron ENSMUSG00000030347 D6Wsu163e ENSMUST00000201603 - NO_TRANSLATION retained_intron ENSMUSG00000046192 Iqub ENSMUST00000052277 ENSMUSP00000051177 TRANSLATION protein_coding - CCDS19941.1 1 788.0 4.0 4.68 0.8 0.0 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000039347 Atp6v0e2 ENSMUST00000040361 ENSMUSP00000044110 TRANSLATION protein_coding - CCDS20103.1 1 81.0 0.0 2.5 36.9 85.0 3.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039347 Atp6v0e2 ENSMUST00000204277 - NO_TRANSLATION retained_intron ENSMUSG00000039347 Atp6v0e2 ENSMUST00000203011 ENSMUSP00000145198 TRANSLATION protein_coding - CCDS85039.1 2 112.0 0.0 1.5 0.0 46.3 3.0 -1,-5 0.0195 - 6.87 MINOR ENSMUSG00000030279 C2cd5 ENSMUST00000111758 ENSMUSP00000107388 TRANSLATION protein_coding - CCDS51953.1 1 990.0 9.0 1.59 6.2 82.7 0.0 -4,-6 0.8937 18 15.794 MINOR ENSMUSG00000030279 C2cd5 ENSMUST00000205079 - NO_TRANSLATION retained_intron ENSMUSG00000030279 C2cd5 ENSMUST00000204140 ENSMUSP00000145173 TRANSLATION protein_coding stop - 2 232.0 9.0 1.59 0.0 82.7 0.0 -4,-6 0.0405 4 -2.0 MINOR ENSMUSG00000030279 C2cd5 ENSMUST00000203673 ENSMUSP00000145425 TRANSLATION protein_coding - - 5 1052.0 9.0 1.59 9.7 82.7 0.0 -4,-6 0.9297 21 17.0 ALTERNATIVE:1 ENSMUSG00000030279 C2cd5 ENSMUST00000087485 ENSMUSP00000084758 TRANSLATION protein_coding - CCDS51953.1 5 990.0 9.0 1.59 6.2 82.7 0.0 -4,-6 0.8937 18 15.794 MINOR ENSMUSG00000030279 C2cd5 ENSMUST00000204967 - NO_TRANSLATION retained_intron ENSMUSG00000030279 C2cd5 ENSMUST00000204043 ENSMUSP00000145382 TRANSLATION protein_coding start/stop - 5 181.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000030279 C2cd5 ENSMUST00000203349 - NO_TRANSLATION retained_intron ENSMUSG00000030279 C2cd5 ENSMUST00000203537 - NO_TRANSLATION retained_intron ENSMUSG00000030279 C2cd5 ENSMUST00000204655 ENSMUSP00000145019 TRANSLATION protein_coding - CCDS51951.1 5 999.0 9.0 1.59 0.0 82.7 0.0 -4,-6 0.3818 20 14.0 MINOR ENSMUSG00000030279 C2cd5 ENSMUST00000171349 ENSMUSP00000127834 TRANSLATION protein_coding - CCDS51951.1 5 999.0 9.0 1.59 0.0 82.7 0.0 -4,-6 0.3818 20 14.0 MINOR ENSMUSG00000030279 C2cd5 ENSMUST00000204233 - NO_TRANSLATION retained_intron ENSMUSG00000030279 C2cd5 ENSMUST00000203187 ENSMUSP00000145373 TRANSLATION protein_coding - CCDS51952.1 1 1016.0 9.0 1.59 8.5 82.7 0.0 -4,-6 1.0 21 16.586 PRINCIPAL:4 ENSMUSG00000030279 C2cd5 ENSMUST00000204635 - NO_TRANSLATION retained_intron ENSMUSG00000030279 C2cd5 ENSMUST00000205119 ENSMUSP00000145397 TRANSLATION nonsense_mediated_decay - - 1 70.0 3.0 1.09 0.0 52.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000030279 C2cd5 ENSMUST00000204160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030279 C2cd5 ENSMUST00000205117 - NO_TRANSLATION retained_intron ENSMUSG00000076577 Igkv8-30 ENSMUST00000103378 ENSMUSP00000100179 TRANSLATION IG_V_gene stop - - 121.0 0.0 1.0 0.0 67.6 0.0 3,-2 0.8226 2 -2.0 PRINCIPAL:1 ENSMUSG00000029638 Glcci1 ENSMUST00000162206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029638 Glcci1 ENSMUST00000162567 ENSMUSP00000125079 TRANSLATION protein_coding - CCDS71724.1 1 351.0 0.0 0.0 1.4 359.2 0.0 -4,-5 0.1345 10 2.776 MINOR ENSMUSG00000029638 Glcci1 ENSMUST00000161494 ENSMUSP00000124595 TRANSLATION protein_coding - - 2 237.0 0.0 0.0 0.0 285.3 0.0 -4,-5 0.0661 4 0.0 MINOR ENSMUSG00000029638 Glcci1 ENSMUST00000162383 ENSMUSP00000125260 TRANSLATION protein_coding stop - 3 94.0 0.0 0.0 0.0 118.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029638 Glcci1 ENSMUST00000064285 ENSMUSP00000069444 TRANSLATION protein_coding - CCDS19910.2 1 538.0 0.0 0.0 0.4 429.6 0.0 -4,0 1.0 14 6.0 PRINCIPAL:1 ENSMUSG00000029638 Glcci1 ENSMUST00000161217 ENSMUSP00000124167 TRANSLATION protein_coding - CCDS71725.1 1 350.0 0.0 0.0 1.4 365.2 0.0 -4,-5 0.139 10 3.136 MINOR ENSMUSG00000030268 Bcat1 ENSMUST00000149769 ENSMUSP00000116091 TRANSLATION protein_coding stop - 3 136.0 6.0 3.08 0.0 0.0 0.0 -4,-5 0.0021 4 -2.0 MINOR ENSMUSG00000030268 Bcat1 ENSMUST00000204138 ENSMUSP00000144968 TRANSLATION protein_coding start/stop - 5 180.0 22.0 3.08 0.0 0.0 0.0 -4,-7 0.0136 4 -2.0 MINOR ENSMUSG00000030268 Bcat1 ENSMUST00000154611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030268 Bcat1 ENSMUST00000155693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030268 Bcat1 ENSMUST00000136819 ENSMUSP00000117708 TRANSLATION protein_coding start - 2 83.0 8.0 1.83 0.0 0.0 0.0 -4,-7 0.0086 - -2.0 MINOR ENSMUSG00000030268 Bcat1 ENSMUST00000123930 ENSMUSP00000120180 TRANSLATION protein_coding stop - 2 223.0 12.0 4.58 0.0 0.0 0.0 -4,-5 0.0092 6 -2.0 MINOR ENSMUSG00000030268 Bcat1 ENSMUST00000111742 ENSMUSP00000107371 TRANSLATION protein_coding - CCDS39703.1 1 386.0 33.0 8.91 17.2 0.0 0.0 -4,-5 1.0 11 15.334 PRINCIPAL:1 ENSMUSG00000030268 Bcat1 ENSMUST00000032402 ENSMUSP00000032402 TRANSLATION protein_coding - CCDS20691.1 1 453.0 34.0 8.91 1.3 0.0 0.0 -2,2 0.2681 12 12.076 MINOR ENSMUSG00000030268 Bcat1 ENSMUST00000048252 ENSMUSP00000039744 TRANSLATION protein_coding - - 1 393.0 33.0 8.65 0.0 0.0 0.0 -4,-5 0.078 10 10.812 MINOR ENSMUSG00000030268 Bcat1 ENSMUST00000145911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045708 Or2a25 ENSMUST00000216408 ENSMUSP00000149325 TRANSLATION protein_coding - CCDS20083.1 5 310.0 0.0 1.0 11.4 203.1 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045708 Or2a25 ENSMUST00000055763 ENSMUSP00000052312 TRANSLATION protein_coding - CCDS20083.1 - 310.0 0.0 1.0 11.4 203.1 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062952 Tas2r110 ENSMUST00000082014 ENSMUSP00000080674 TRANSLATION protein_coding - CCDS20626.1 - 333.0 0.0 0.0 0.0 269.6 0.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030257 Srgap3 ENSMUST00000060215 - NO_TRANSLATION retained_intron ENSMUSG00000030257 Srgap3 ENSMUST00000143475 - NO_TRANSLATION retained_intron ENSMUSG00000030257 Srgap3 ENSMUST00000131835 ENSMUSP00000130063 TRANSLATION nonsense_mediated_decay start - 3 102.0 0.0 0.948 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030257 Srgap3 ENSMUST00000113169 ENSMUSP00000108794 TRANSLATION protein_coding - - 5 1075.0 0.0 10.456 10.0 261.8 0.0 -4,-5 0.7273 36 14.012 MINOR ENSMUSG00000030257 Srgap3 ENSMUST00000088373 ENSMUSP00000085712 TRANSLATION protein_coding - CCDS39590.1 1 1099.0 0.0 10.324 18.9 261.8 0.0 -4,-5 1.0 36 15.736 PRINCIPAL:1 ENSMUSG00000030158 Clec12b ENSMUST00000032261 ENSMUSP00000032261 TRANSLATION protein_coding - CCDS51922.1 1 275.0 4.0 4.6 6.3 91.0 1.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030158 Clec12b ENSMUST00000112082 ENSMUSP00000107713 TRANSLATION protein_coding - CCDS51922.1 1 275.0 4.0 4.6 6.3 91.0 1.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000029629 Phf14 ENSMUST00000090632 ENSMUSP00000088126 TRANSLATION protein_coding - - 1 878.0 26.0 2.6 3.5 176.9 0.0 -4,-2 0.2411 12 11.524 MINOR ENSMUSG00000029629 Phf14 ENSMUST00000203222 - NO_TRANSLATION retained_intron ENSMUSG00000029629 Phf14 ENSMUST00000214543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029629 Phf14 ENSMUST00000115510 ENSMUSP00000111172 TRANSLATION protein_coding - CCDS39428.1 1 881.0 26.0 2.6 3.5 176.9 0.0 -4,-2 0.284 12 11.524 MINOR ENSMUSG00000029629 Phf14 ENSMUST00000133776 ENSMUSP00000115485 TRANSLATION protein_coding start/stop - 3 243.0 16.0 1.4 0.0 136.6 0.0 -1,-5 0.0 4 -2.0 MINOR ENSMUSG00000029629 Phf14 ENSMUST00000204565 - NO_TRANSLATION retained_intron ENSMUSG00000029629 Phf14 ENSMUST00000203045 ENSMUSP00000145527 TRANSLATION nonsense_mediated_decay start - 3 69.0 2.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029629 Phf14 ENSMUST00000115511 ENSMUSP00000111173 TRANSLATION protein_coding - CCDS51720.1 5 941.0 32.0 3.24 5.3 216.2 0.0 -4,-2 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000029629 Phf14 ENSMUST00000204150 - NO_TRANSLATION retained_intron ENSMUSG00000029629 Phf14 ENSMUST00000155037 ENSMUSP00000144981 TRANSLATION protein_coding stop - 2 90.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000029629 Phf14 ENSMUST00000203459 ENSMUSP00000145355 TRANSLATION nonsense_mediated_decay - - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000115482 Vmn1r36 ENSMUST00000226728 ENSMUSP00000154433 TRANSLATION protein_coding - - - 199.0 0.0 0.0 0.0 111.6 4.0 -4,-6 0.0068 - 0.0 MINOR ENSMUSG00000115482 Vmn1r36 ENSMUST00000226635 ENSMUSP00000153849 TRANSLATION protein_coding - CCDS20214.1 - 305.0 0.0 0.0 0.4 181.7 8.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115482 Vmn1r36 ENSMUST00000226829 ENSMUSP00000154183 TRANSLATION protein_coding - CCDS20214.1 - 305.0 0.0 0.0 0.4 181.7 8.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115482 Vmn1r36 ENSMUST00000226142 ENSMUSP00000153912 TRANSLATION protein_coding - - - 268.0 0.0 0.0 0.0 176.7 7.0 0,-4 0.0717 - 0.0 MINOR ENSMUSG00000076550 Igkv4-63 ENSMUST00000103351 ENSMUSP00000100152 TRANSLATION IG_V_gene start/stop - - 95.0 0.0 1.0 0.0 55.4 0.0 -4,-6 0.0557 1 -2.0 ALTERNATIVE:2 ENSMUSG00000076550 Igkv4-63 ENSMUST00000196595 ENSMUSP00000143313 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 55.4 0.0 0,-3 0.8198 1 -2.0 PRINCIPAL:5 ENSMUSG00000090667 Mdfic2 ENSMUST00000164491 ENSMUSP00000127120 TRANSLATION protein_coding - CCDS51863.1 1 189.0 0.0 0.0 6.1 159.2 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000090667 Mdfic2 ENSMUST00000204914 - NO_TRANSLATION retained_intron ENSMUSG00000030337 Vamp1 ENSMUST00000100942 ENSMUSP00000098503 TRANSLATION protein_coding - CCDS39637.1 1 117.0 0.0 2.1 7.9 115.6 1.0 -4,-5 0.7721 2 13.466 MINOR ENSMUSG00000030337 Vamp1 ENSMUST00000205223 ENSMUSP00000144835 TRANSLATION protein_coding start - 5 116.0 0.0 2.1 1.9 113.9 1.0 -4,-5 0.2013 2 -2.0 MINOR ENSMUSG00000030337 Vamp1 ENSMUST00000159547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030337 Vamp1 ENSMUST00000063588 ENSMUSP00000063466 TRANSLATION protein_coding - - 2 171.0 0.0 2.1 0.0 112.4 2.0 -4,-5 0.0483 2 11.622 MINOR ENSMUSG00000030337 Vamp1 ENSMUST00000160523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030337 Vamp1 ENSMUST00000032487 ENSMUSP00000032487 TRANSLATION protein_coding - CCDS20546.1 1 118.0 0.0 2.1 17.7 118.7 2.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000055850 Rnf181 ENSMUST00000133978 - NO_TRANSLATION retained_intron ENSMUSG00000055850 Rnf181 ENSMUST00000149296 ENSMUSP00000138442 TRANSLATION nonsense_mediated_decay start - 5 26.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055850 Rnf181 ENSMUST00000069580 ENSMUSP00000066128 TRANSLATION protein_coding - CCDS20240.1 1 165.0 8.0 3.642 0.4 53.9 0.0 -4,-5 0.1367 5 14.0 ALTERNATIVE:2 ENSMUSG00000055850 Rnf181 ENSMUST00000129233 ENSMUSP00000138365 TRANSLATION nonsense_mediated_decay start - 2 42.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055850 Rnf181 ENSMUST00000205399 - NO_TRANSLATION retained_intron ENSMUSG00000055850 Rnf181 ENSMUST00000114095 ENSMUSP00000109729 TRANSLATION protein_coding - - 3 206.0 6.0 2.632 0.0 38.7 0.0 -4,-5 0.0044 2 9.144 MINOR ENSMUSG00000055850 Rnf181 ENSMUST00000125554 ENSMUSP00000138229 TRANSLATION nonsense_mediated_decay start - 3 31.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055850 Rnf181 ENSMUST00000206319 - NO_TRANSLATION retained_intron ENSMUSG00000055850 Rnf181 ENSMUST00000154098 ENSMUSP00000138327 TRANSLATION protein_coding - CCDS85064.1 1 118.0 8.0 3.41 1.1 53.9 0.0 -4,-5 0.8662 3 14.538 PRINCIPAL:2 ENSMUSG00000055850 Rnf181 ENSMUST00000130064 ENSMUSP00000115187 TRANSLATION protein_coding start - 3 109.0 8.0 2.742 0.0 53.9 0.0 -4,-7 0.0101 3 -2.0 MINOR ENSMUSG00000055850 Rnf181 ENSMUST00000151063 ENSMUSP00000138670 TRANSLATION nonsense_mediated_decay - - 5 52.0 0.0 0.232 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000055850 Rnf181 ENSMUST00000126065 ENSMUSP00000138309 TRANSLATION nonsense_mediated_decay start - 2 46.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055850 Rnf181 ENSMUST00000136707 - NO_TRANSLATION retained_intron ENSMUSG00000055850 Rnf181 ENSMUST00000069595 ENSMUSP00000070370 TRANSLATION protein_coding - - 1 97.0 8.0 2.542 0.0 53.9 0.0 -4,-5 0.0028 3 11.798 MINOR ENSMUSG00000052736 Klrc2 ENSMUST00000118401 ENSMUSP00000113970 TRANSLATION protein_coding - CCDS51924.1 1 213.0 4.0 2.4 0.0 45.6 2.0 -4,-5 0.0928 - 11.19 ALTERNATIVE:2 ENSMUSG00000052736 Klrc2 ENSMUST00000071920 ENSMUSP00000071813 TRANSLATION protein_coding - - 5 221.0 4.0 2.565 0.0 45.6 2.0 -4,-5 0.0163 - 11.544 ALTERNATIVE:2 ENSMUSG00000052736 Klrc2 ENSMUST00000119533 ENSMUSP00000112733 TRANSLATION protein_coding - CCDS51925.1 1 238.0 4.0 2.775 0.1 45.6 2.0 -4,-5 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000052736 Klrc2 ENSMUST00000149494 - NO_TRANSLATION retained_intron ENSMUSG00000052736 Klrc2 ENSMUST00000145984 ENSMUSP00000116286 TRANSLATION protein_coding - - 1 206.0 3.0 2.605 0.0 29.9 2.0 -4,-5 0.0083 - 8.634 MINOR ENSMUSG00000052736 Klrc2 ENSMUST00000112057 ENSMUSP00000107688 TRANSLATION protein_coding - CCDS51925.1 1 238.0 4.0 2.775 0.1 45.6 2.0 -4,-5 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000076591 Igkv8-16 ENSMUST00000195945 ENSMUSP00000142364 TRANSLATION IG_V_gene stop - - 121.0 0.0 1.0 0.0 47.0 0.0 3,-2 0.8223 - -2.0 PRINCIPAL:1 ENSMUSG00000084927 Gm5724 ENSMUST00000148411 ENSMUSP00000117177 TRANSLATION protein_coding - - 5 670.0 0.0 0.0 7.2 580.5 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000079852 Klra4 ENSMUST00000119096 ENSMUSP00000114004 TRANSLATION protein_coding - CCDS57457.1 1 263.0 3.0 4.5 0.1 228.3 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000048794 Cfap100 ENSMUST00000127508 ENSMUSP00000145109 TRANSLATION protein_coding - - 2 72.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000048794 Cfap100 ENSMUST00000134224 ENSMUSP00000145247 TRANSLATION protein_coding - - 1 72.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000048794 Cfap100 ENSMUST00000135757 ENSMUSP00000144829 TRANSLATION protein_coding - - 5 39.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000048794 Cfap100 ENSMUST00000165673 ENSMUSP00000126515 TRANSLATION protein_coding - CCDS51849.1 5 613.0 0.0 0.0 0.0 114.3 0.0 -4,-7 0.2904 - 2.0 ALTERNATIVE:2 ENSMUSG00000048794 Cfap100 ENSMUST00000128124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048794 Cfap100 ENSMUST00000153843 ENSMUSP00000144969 TRANSLATION nonsense_mediated_decay - - 2 47.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0095 - -2.0 MINOR ENSMUSG00000048794 Cfap100 ENSMUST00000062750 ENSMUSP00000059976 TRANSLATION protein_coding - - 1 459.0 0.0 0.0 0.0 113.9 0.0 -4,-7 0.696 - 2.0 PRINCIPAL:2 ENSMUSG00000076608 Igkj5 ENSMUST00000103409 - NO_TRANSLATION processed_transcript ENSMUSG00000076608 Igkj5 ENSMUST00000199459 ENSMUSP00000142377 TRANSLATION IG_J_gene start/stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000038390 Gpr162 ENSMUST00000046893 ENSMUSP00000038536 TRANSLATION protein_coding - CCDS20534.1 1 588.0 0.0 0.6 9.2 66.3 7.0 -2,-3 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000038390 Gpr162 ENSMUST00000204253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038390 Gpr162 ENSMUST00000204667 ENSMUSP00000145267 TRANSLATION protein_coding - CCDS20534.1 1 588.0 0.0 0.6 9.2 66.3 7.0 -2,-3 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000038390 Gpr162 ENSMUST00000204161 - NO_TRANSLATION retained_intron ENSMUSG00000001642 Akr1b1 ENSMUST00000142761 - NO_TRANSLATION retained_intron ENSMUSG00000001642 Akr1b1 ENSMUST00000102980 ENSMUSP00000100045 TRANSLATION protein_coding - CCDS19990.1 1 316.0 30.0 8.58 33.6 183.2 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000001642 Akr1b1 ENSMUST00000136559 - NO_TRANSLATION retained_intron ENSMUSG00000001642 Akr1b1 ENSMUST00000154655 ENSMUSP00000114391 TRANSLATION protein_coding stop - 5 176.0 9.0 3.83 0.0 82.4 0.0 -4,-5 0.0001 8 -2.0 MINOR ENSMUSG00000001642 Akr1b1 ENSMUST00000126991 - NO_TRANSLATION retained_intron ENSMUSG00000001642 Akr1b1 ENSMUST00000201392 - NO_TRANSLATION retained_intron ENSMUSG00000029910 Mad2l1 ENSMUST00000116605 ENSMUSP00000112304 TRANSLATION protein_coding - CCDS20210.1 1 205.0 0.0 4.75 12.5 80.8 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000029910 Mad2l1 ENSMUST00000135411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029910 Mad2l1 ENSMUST00000101343 ENSMUSP00000098897 TRANSLATION protein_coding - CCDS20210.1 1 205.0 0.0 4.75 12.5 80.8 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000029910 Mad2l1 ENSMUST00000125430 - NO_TRANSLATION retained_intron ENSMUSG00000029684 Wasl ENSMUST00000173399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029684 Wasl ENSMUST00000031695 ENSMUSP00000031695 TRANSLATION protein_coding - CCDS19945.1 1 501.0 0.0 6.1 0.1 266.4 0.0 -4,-1 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000029684 Wasl ENSMUST00000201867 - NO_TRANSLATION retained_intron ENSMUSG00000029684 Wasl ENSMUST00000041737 ENSMUSP00000043968 TRANSLATION protein_coding - CCDS51727.1 1 193.0 0.0 3.75 0.0 140.3 0.0 -4,-1 0.0128 4 1.302 MINOR ENSMUSG00000040121 Rep15 ENSMUST00000036194 ENSMUSP00000037503 TRANSLATION protein_coding - CCDS20704.1 - 230.0 0.0 0.0 9.9 383.6 0.0 -4,-5 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000039742 Garin1b ENSMUST00000166462 ENSMUSP00000132703 TRANSLATION protein_coding - CCDS80498.1 1 342.0 0.0 2.93 5.6 90.8 0.0 -4,-2 0.9641 - 9.642 ALTERNATIVE:1 ENSMUSG00000039742 Garin1b ENSMUST00000168771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039742 Garin1b ENSMUST00000090487 ENSMUSP00000087973 TRANSLATION protein_coding - CCDS39451.1 1 341.0 0.0 2.93 6.6 90.8 0.0 -4,-2 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000039742 Garin1b ENSMUST00000163229 ENSMUSP00000132402 TRANSLATION nonsense_mediated_decay - - 1 92.0 0.0 0.6 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000039742 Garin1b ENSMUST00000164560 ENSMUSP00000126496 TRANSLATION protein_coding - CCDS80497.1 1 344.0 0.0 2.93 6.6 90.8 0.0 -4,-2 0.9452 - 10.0 ALTERNATIVE:1 ENSMUSG00000052850 Tas2r137 ENSMUST00000064932 ENSMUSP00000063743 TRANSLATION protein_coding - CCDS20031.1 - 333.0 0.0 0.0 0.0 298.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000059654 Reg1 ENSMUST00000079926 ENSMUSP00000078847 TRANSLATION protein_coding - CCDS20257.1 1 165.0 7.0 3.99 1.7 76.8 0.0 4,-1 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000059654 Reg1 ENSMUST00000204601 ENSMUSP00000144840 TRANSLATION protein_coding - CCDS20257.1 5 165.0 7.0 3.99 1.7 76.8 0.0 4,-1 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000059654 Reg1 ENSMUST00000204687 ENSMUSP00000145161 TRANSLATION protein_coding - CCDS20257.1 5 165.0 7.0 3.99 1.7 76.8 0.0 4,-1 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000004535 Tax1bp1 ENSMUST00000149586 - NO_TRANSLATION retained_intron ENSMUSG00000004535 Tax1bp1 ENSMUST00000129660 ENSMUSP00000122922 TRANSLATION protein_coding stop - 2 87.0 0.0 2.0 0.0 105.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000004535 Tax1bp1 ENSMUST00000149588 ENSMUSP00000116059 TRANSLATION protein_coding stop - 2 161.0 0.0 3.0 0.0 192.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000004535 Tax1bp1 ENSMUST00000080723 ENSMUSP00000079548 TRANSLATION protein_coding - CCDS39490.1 1 814.0 7.0 4.0 6.9 299.5 0.0 -4,-6 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000004535 Tax1bp1 ENSMUST00000138040 ENSMUSP00000119522 TRANSLATION protein_coding stop - 3 172.0 0.0 3.0 0.0 201.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000004535 Tax1bp1 ENSMUST00000128173 - NO_TRANSLATION retained_intron ENSMUSG00000004535 Tax1bp1 ENSMUST00000147513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053251 Or6d12 ENSMUST00000218028 ENSMUSP00000151377 TRANSLATION protein_coding - CCDS20454.1 5 327.0 0.0 1.0 0.8 148.3 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000053251 Or6d12 ENSMUST00000220134 ENSMUSP00000151524 TRANSLATION protein_coding - CCDS20454.1 5 327.0 0.0 1.0 0.8 148.3 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000053251 Or6d12 ENSMUST00000075756 ENSMUSP00000075164 TRANSLATION protein_coding - CCDS20454.1 1 327.0 0.0 1.0 0.8 148.3 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000076489 Trbj1-7 ENSMUST00000193061 ENSMUSP00000141199 TRANSLATION TR_J_gene start/stop - - 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000030203 Dusp16 ENSMUST00000129433 ENSMUSP00000115925 TRANSLATION protein_coding - CCDS85175.1 1 338.0 8.0 5.95 0.0 171.3 0.0 -4,-7 0.0729 - 15.702 MINOR ENSMUSG00000030203 Dusp16 ENSMUST00000100857 ENSMUSP00000098419 TRANSLATION protein_coding - CCDS39679.1 1 660.0 8.0 5.95 11.6 209.6 0.0 -4,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000030203 Dusp16 ENSMUST00000148926 ENSMUSP00000144917 TRANSLATION nonsense_mediated_decay start - 3 51.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030203 Dusp16 ENSMUST00000203651 - NO_TRANSLATION retained_intron ENSMUSG00000030203 Dusp16 ENSMUST00000204083 ENSMUSP00000144834 TRANSLATION nonsense_mediated_decay - - 5 143.0 0.0 2.5 0.0 52.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030203 Dusp16 ENSMUST00000149776 ENSMUSP00000144784 TRANSLATION protein_coding - - 1 206.0 0.0 3.1 0.0 61.1 0.0 -4,-7 0.0 - 0.3 MINOR ENSMUSG00000030203 Dusp16 ENSMUST00000203452 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038521 C1s1 ENSMUST00000160505 ENSMUSP00000125531 TRANSLATION protein_coding - CCDS51907.1 1 694.0 32.0 9.25 8.4 429.5 0.0 3,-2 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000038521 C1s1 ENSMUST00000162443 ENSMUSP00000125712 TRANSLATION protein_coding - CCDS51907.1 1 694.0 32.0 9.25 8.4 429.5 0.0 3,-2 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000038521 C1s1 ENSMUST00000159463 ENSMUSP00000125439 TRANSLATION protein_coding stop - 3 136.0 13.0 2.25 0.0 65.2 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000038521 C1s1 ENSMUST00000162844 ENSMUSP00000124109 TRANSLATION protein_coding stop - 2 27.0 0.0 0.25 0.0 0.0 0.0 3,-2 0.0008 - -2.0 MINOR ENSMUSG00000038521 C1s1 ENSMUST00000159143 - NO_TRANSLATION retained_intron ENSMUSG00000096515 Igkv14-100 ENSMUST00000199510 ENSMUSP00000143410 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.1 0.0 51.0 0.0 4,-1 0.8228 1 -2.0 PRINCIPAL:1 ENSMUSG00000063415 Cyp26b1 ENSMUST00000204146 ENSMUSP00000145092 TRANSLATION protein_coding - CCDS20289.1 1 512.0 28.0 3.8 30.2 201.9 0.0 -1,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000063415 Cyp26b1 ENSMUST00000077705 ENSMUSP00000076886 TRANSLATION protein_coding - CCDS20289.1 1 512.0 28.0 3.8 30.2 201.9 0.0 -1,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000063415 Cyp26b1 ENSMUST00000205228 ENSMUSP00000144836 TRANSLATION protein_coding - - 1 321.0 22.0 2.0 1.0 166.9 0.0 -4,-5 0.0231 3 8.298 MINOR ENSMUSG00000063415 Cyp26b1 ENSMUST00000168003 ENSMUSP00000128391 TRANSLATION protein_coding - CCDS20289.1 1 512.0 28.0 3.8 30.2 201.9 0.0 -1,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000063415 Cyp26b1 ENSMUST00000204109 ENSMUSP00000144998 TRANSLATION protein_coding - - 5 437.0 25.0 3.0 2.8 173.5 0.0 -1,-5 0.042 4 12.944 MINOR ENSMUSG00000034430 Zxdc ENSMUST00000045740 ENSMUSP00000036329 TRANSLATION protein_coding - - 1 512.0 38.0 2.83 0.0 119.1 0.0 -4,-5 0.7778 2 14.0 PRINCIPAL:2 ENSMUSG00000034430 Zxdc ENSMUST00000203493 ENSMUSP00000144992 TRANSLATION protein_coding start - 1 152.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0008 - -2.0 MINOR ENSMUSG00000034430 Zxdc ENSMUST00000113539 ENSMUSP00000109167 TRANSLATION protein_coding - CCDS51848.1 1 712.0 38.0 2.83 0.0 119.1 0.0 -4,-5 0.2773 2 14.0 ALTERNATIVE:2 ENSMUSG00000034430 Zxdc ENSMUST00000137483 - NO_TRANSLATION retained_intron ENSMUSG00000034430 Zxdc ENSMUST00000075117 ENSMUSP00000074619 TRANSLATION protein_coding - CCDS20358.1 1 858.0 38.0 2.83 0.0 119.1 0.0 -4,-5 0.3784 2 14.0 ALTERNATIVE:2 ENSMUSG00000052144 Ppp4r2 ENSMUST00000063854 ENSMUSP00000066314 TRANSLATION protein_coding - CCDS20391.1 1 417.0 0.0 4.5 9.2 256.3 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000052144 Ppp4r2 ENSMUST00000203580 ENSMUSP00000145102 TRANSLATION protein_coding start - 5 300.0 0.0 2.25 0.0 143.9 0.0 -4,-5 0.0009 6 -2.0 MINOR ENSMUSG00000052144 Ppp4r2 ENSMUST00000203940 ENSMUSP00000144898 TRANSLATION protein_coding start/stop - 3 229.0 0.0 2.75 0.0 147.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000052144 Ppp4r2 ENSMUST00000203067 - NO_TRANSLATION retained_intron ENSMUSG00000052144 Ppp4r2 ENSMUST00000204001 - NO_TRANSLATION retained_intron ENSMUSG00000052144 Ppp4r2 ENSMUST00000249620 ENSMUSP00000159829 TRANSLATION protein_coding - - - 451.0 0.0 4.5 0.0 256.3 0.0 -2,-5 0.0468 14 12.0 MINOR ENSMUSG00000076485 Trbj1-3 ENSMUST00000192366 ENSMUSP00000141903 TRANSLATION TR_J_gene start/stop - - 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000115181 Vmn1r10 ENSMUST00000176073 ENSMUSP00000134901 TRANSLATION protein_coding - CCDS39495.1 - 311.0 0.0 0.0 0.1 175.9 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115181 Vmn1r10 ENSMUST00000228270 ENSMUSP00000154213 TRANSLATION protein_coding - CCDS39495.1 - 311.0 0.0 0.0 0.1 175.9 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043088 Il17re ENSMUST00000205211 - NO_TRANSLATION retained_intron ENSMUSG00000043088 Il17re ENSMUST00000053569 ENSMUSP00000054378 TRANSLATION protein_coding - CCDS20421.1 1 436.0 0.0 1.332 0.3 394.2 1.0 -4,-5 0.0381 - 6.896 MINOR ENSMUSG00000043088 Il17re ENSMUST00000204523 - NO_TRANSLATION retained_intron ENSMUSG00000043088 Il17re ENSMUST00000203897 - NO_TRANSLATION retained_intron ENSMUSG00000043088 Il17re ENSMUST00000203661 ENSMUSP00000145345 TRANSLATION protein_coding - - 1 591.0 0.0 1.432 0.0 476.3 0.0 3,-2 0.0805 - 7.262 MINOR ENSMUSG00000043088 Il17re ENSMUST00000204774 ENSMUSP00000145384 TRANSLATION protein_coding - - 1 617.0 0.0 1.632 0.0 487.4 0.0 3,-2 0.8937 - 8.0 PRINCIPAL:4 ENSMUSG00000043088 Il17re ENSMUST00000058548 ENSMUSP00000062103 TRANSLATION protein_coding - CCDS20420.1 1 637.0 0.0 1.632 0.4 487.4 1.0 3,-2 0.7936 - 8.0 ALTERNATIVE:2 ENSMUSG00000043088 Il17re ENSMUST00000203281 ENSMUSP00000145363 TRANSLATION nonsense_mediated_decay - - 1 67.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0021 - -2.0 MINOR ENSMUSG00000043088 Il17re ENSMUST00000101065 ENSMUSP00000098626 TRANSLATION protein_coding - CCDS20421.1 1 436.0 0.0 1.332 0.3 394.2 1.0 -4,-5 0.0381 - 6.896 MINOR ENSMUSG00000008540 Mgst1 ENSMUST00000120302 ENSMUSP00000113257 TRANSLATION protein_coding - CCDS20668.1 3 155.0 0.0 3.68 33.2 92.4 6.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000008540 Mgst1 ENSMUST00000204628 ENSMUSP00000144912 TRANSLATION protein_coding - - 3 46.0 0.0 1.0 0.0 0.0 2.0 -4,-6 0.0017 2 0.642 MINOR ENSMUSG00000008540 Mgst1 ENSMUST00000120230 ENSMUSP00000113859 TRANSLATION protein_coding - CCDS20668.1 3 155.0 0.0 3.68 33.2 92.4 6.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000008540 Mgst1 ENSMUST00000120939 ENSMUSP00000112646 TRANSLATION protein_coding - - 3 102.0 0.0 1.93 0.0 0.0 2.0 -4,-6 0.0002 5 2.502 MINOR ENSMUSG00000008540 Mgst1 ENSMUST00000140932 ENSMUSP00000145306 TRANSLATION protein_coding - - 3 51.0 0.0 1.0 0.0 33.6 3.0 -4,-1 0.0015 1 2.826 MINOR ENSMUSG00000008540 Mgst1 ENSMUST00000008684 ENSMUSP00000008684 TRANSLATION protein_coding - CCDS20668.1 1 155.0 0.0 3.68 33.2 92.4 6.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000008540 Mgst1 ENSMUST00000125810 ENSMUSP00000114222 TRANSLATION protein_coding stop - 5 91.0 0.0 1.33 0.0 0.0 2.0 -2,-3 0.0019 2 -2.0 MINOR ENSMUSG00000008540 Mgst1 ENSMUST00000118091 ENSMUSP00000112923 TRANSLATION protein_coding - CCDS85177.1 2 229.0 0.0 3.68 0.0 92.4 6.0 -4,0 0.1972 6 12.0 MINOR ENSMUSG00000029814 Igf2bp3 ENSMUST00000203680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029814 Igf2bp3 ENSMUST00000203544 - NO_TRANSLATION retained_intron ENSMUSG00000029814 Igf2bp3 ENSMUST00000031838 ENSMUSP00000031838 TRANSLATION protein_coding - CCDS39485.1 1 579.0 0.0 11.25 19.7 230.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000029814 Igf2bp3 ENSMUST00000203863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029814 Igf2bp3 ENSMUST00000205057 - NO_TRANSLATION retained_intron ENSMUSG00000030167 Klrc1 ENSMUST00000032271 ENSMUSP00000032271 TRANSLATION protein_coding - CCDS51926.1 1 244.0 3.0 2.85 0.0 46.5 0.0 -4,-7 1.0 - 11.0 PRINCIPAL:2 ENSMUSG00000030167 Klrc1 ENSMUST00000169545 ENSMUSP00000130762 TRANSLATION protein_coding - CCDS80621.1 1 210.0 3.0 2.45 0.0 46.5 0.0 -4,-7 0.1006 - 10.16 ALTERNATIVE:2 ENSMUSG00000030167 Klrc1 ENSMUST00000032270 ENSMUSP00000032270 TRANSLATION protein_coding - CCDS51926.1 1 244.0 3.0 2.85 0.0 46.5 0.0 -4,-7 1.0 - 11.0 PRINCIPAL:2 ENSMUSG00000030167 Klrc1 ENSMUST00000118447 ENSMUSP00000114017 TRANSLATION protein_coding - CCDS39663.1 1 227.0 3.0 2.6 0.8 46.5 0.0 -4,-7 0.0998 - 10.472 ALTERNATIVE:2 ENSMUSG00000093661 Eif4e3 ENSMUST00000032151 ENSMUSP00000032151 TRANSLATION protein_coding - CCDS20386.1 1 207.0 0.0 5.75 0.3 136.2 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000023289 Sva ENSMUST00000024059 ENSMUSP00000024059 TRANSLATION protein_coding - CCDS20060.1 1 158.0 0.0 1.9 0.0 150.1 0.0 2,-2 0.5456 4 8.0 ALTERNATIVE:2 ENSMUSG00000023289 Sva ENSMUST00000117406 ENSMUSP00000112528 TRANSLATION protein_coding - - 1 165.0 0.0 1.9 0.0 150.1 0.0 -1,-3 0.7774 4 8.0 PRINCIPAL:4 ENSMUSG00000049409 Prokr1 ENSMUST00000203636 ENSMUSP00000145476 TRANSLATION protein_coding stop - 3 114.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049409 Prokr1 ENSMUST00000050887 ENSMUSP00000059034 TRANSLATION protein_coding - CCDS20323.1 1 393.0 0.0 3.73 11.8 156.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049409 Prokr1 ENSMUST00000204682 ENSMUSP00000144999 TRANSLATION protein_coding - CCDS20323.1 1 393.0 0.0 3.73 11.8 156.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030148 Clec4a2 ENSMUST00000032248 ENSMUSP00000032248 TRANSLATION protein_coding - CCDS51894.1 1 262.0 5.0 4.49 0.0 73.4 2.0 -4,-5 0.1574 2 13.0 ALTERNATIVE:2 ENSMUSG00000030148 Clec4a2 ENSMUST00000159891 ENSMUSP00000124532 TRANSLATION protein_coding stop - 5 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030148 Clec4a2 ENSMUST00000161636 ENSMUSP00000123973 TRANSLATION protein_coding stop - 5 74.0 0.0 0.5 0.0 0.0 2.0 -4,-5 0.0032 1 -2.0 MINOR ENSMUSG00000030148 Clec4a2 ENSMUST00000161365 ENSMUSP00000124615 TRANSLATION protein_coding - CCDS20510.1 1 238.0 5.0 4.04 3.8 73.4 2.0 -4,-5 1.0 2 13.1 PRINCIPAL:2 ENSMUSG00000030148 Clec4a2 ENSMUST00000041779 ENSMUSP00000045781 TRANSLATION protein_coding - CCDS20510.1 1 238.0 5.0 4.04 3.8 73.4 2.0 -4,-5 1.0 2 13.1 PRINCIPAL:2 ENSMUSG00000014550 Rbsn ENSMUST00000141332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014550 Rbsn ENSMUST00000138041 ENSMUSP00000120883 TRANSLATION protein_coding stop - 3 45.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000014550 Rbsn ENSMUST00000014694 ENSMUSP00000014694 TRANSLATION protein_coding - CCDS20374.1 1 783.0 10.0 1.93 2.6 391.8 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000014550 Rbsn ENSMUST00000204858 - NO_TRANSLATION retained_intron ENSMUSG00000014550 Rbsn ENSMUST00000203516 ENSMUSP00000144945 TRANSLATION protein_coding stop - 3 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014550 Rbsn ENSMUST00000124635 ENSMUSP00000144749 TRANSLATION protein_coding start - 3 142.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000108022 Gm7298 ENSMUST00000204124 ENSMUSP00000145242 TRANSLATION protein_coding - - 5 1476.0 4.0 25.765 0.0 704.4 0.0 3,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000045100 Slc25a26 ENSMUST00000205254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045100 Slc25a26 ENSMUST00000204985 ENSMUSP00000145025 TRANSLATION nonsense_mediated_decay start - 1 155.0 0.0 4.055 0.0 66.4 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000045100 Slc25a26 ENSMUST00000203484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045100 Slc25a26 ENSMUST00000205173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045100 Slc25a26 ENSMUST00000204235 ENSMUSP00000145328 TRANSLATION nonsense_mediated_decay - - 1 121.0 0.0 2.845 0.0 55.8 2.0 -2,-5 0.0015 - -2.0 MINOR ENSMUSG00000045100 Slc25a26 ENSMUST00000204764 ENSMUSP00000144816 TRANSLATION nonsense_mediated_decay - - 1 83.0 0.0 1.915 0.0 31.6 2.0 -2,-5 0.0015 - -2.0 MINOR ENSMUSG00000045100 Slc25a26 ENSMUST00000061118 ENSMUSP00000058028 TRANSLATION protein_coding - CCDS20379.1 1 274.0 0.0 8.095 11.6 169.7 3.0 -2,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000040029 Ipo8 ENSMUST00000239062 ENSMUSP00000159101 TRANSLATION protein_coding start - - 513.0 0.0 8.25 0.0 30.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040029 Ipo8 ENSMUST00000144357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040029 Ipo8 ENSMUST00000145743 - NO_TRANSLATION retained_intron ENSMUSG00000040029 Ipo8 ENSMUST00000205196 - NO_TRANSLATION retained_intron ENSMUSG00000040029 Ipo8 ENSMUST00000123842 - NO_TRANSLATION retained_intron ENSMUSG00000040029 Ipo8 ENSMUST00000136896 - NO_TRANSLATION retained_intron ENSMUSG00000040029 Ipo8 ENSMUST00000048418 ENSMUSP00000046759 TRANSLATION protein_coding - CCDS39719.1 1 1010.0 0.0 14.871 0.4 130.3 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000040029 Ipo8 ENSMUST00000204016 - NO_TRANSLATION retained_intron ENSMUSG00000040029 Ipo8 ENSMUST00000147955 - NO_TRANSLATION retained_intron ENSMUSG00000040029 Ipo8 ENSMUST00000204936 ENSMUSP00000144744 TRANSLATION nonsense_mediated_decay - - 5 35.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040029 Ipo8 ENSMUST00000204424 - NO_TRANSLATION retained_intron ENSMUSG00000040029 Ipo8 ENSMUST00000145960 ENSMUSP00000117365 TRANSLATION protein_coding stop - 1 361.0 0.0 2.871 0.0 70.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000030084 Plxna1 ENSMUST00000205230 - NO_TRANSLATION retained_intron ENSMUSG00000030084 Plxna1 ENSMUST00000204468 ENSMUSP00000144822 TRANSLATION nonsense_mediated_decay start - 3 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0232 - -2.0 MINOR ENSMUSG00000030084 Plxna1 ENSMUST00000204997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030084 Plxna1 ENSMUST00000205121 ENSMUSP00000145403 TRANSLATION nonsense_mediated_decay start - 5 59.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0004 - -2.0 MINOR ENSMUSG00000030084 Plxna1 ENSMUST00000163139 ENSMUSP00000131840 TRANSLATION protein_coding - CCDS20344.1 1 1894.0 0.0 26.71 4.7 1309.5 0.0 4,-1 1.0 30 14.0 PRINCIPAL:1 ENSMUSG00000030116 Mfap5 ENSMUST00000125728 ENSMUSP00000118521 TRANSLATION protein_coding stop - 5 28.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0 - -2.0 MINOR ENSMUSG00000030116 Mfap5 ENSMUST00000126357 - NO_TRANSLATION retained_intron ENSMUSG00000030116 Mfap5 ENSMUST00000142896 ENSMUSP00000116769 TRANSLATION protein_coding stop - 5 122.0 0.0 1.83 0.0 174.2 0.0 0,-3 0.0032 3 -2.0 MINOR ENSMUSG00000030116 Mfap5 ENSMUST00000032210 ENSMUSP00000032210 TRANSLATION protein_coding - CCDS85155.1 3 152.0 0.0 2.43 7.3 153.3 0.0 2,-1 0.5995 5 11.691 MINOR ENSMUSG00000030116 Mfap5 ENSMUST00000121656 ENSMUSP00000112596 TRANSLATION protein_coding - - 3 69.0 0.0 0.75 0.0 66.3 0.0 2,-2 0.0027 - 1.854 MINOR ENSMUSG00000030116 Mfap5 ENSMUST00000148517 ENSMUSP00000122863 TRANSLATION protein_coding - CCDS20496.1 1 164.0 0.0 2.43 10.2 192.7 0.0 2,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000030116 Mfap5 ENSMUST00000118626 ENSMUSP00000113742 TRANSLATION protein_coding - - 3 156.0 0.0 2.43 6.8 172.3 0.0 2,-1 0.545 5 12.666 MINOR ENSMUSG00000012483 Rpa3 ENSMUST00000159594 - NO_TRANSLATION retained_intron ENSMUSG00000012483 Rpa3 ENSMUST00000012627 ENSMUSP00000012627 TRANSLATION protein_coding - CCDS19909.1 1 121.0 0.0 3.5 14.7 112.8 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000030156 Cd69 ENSMUST00000205032 - NO_TRANSLATION retained_intron ENSMUSG00000030156 Cd69 ENSMUST00000032259 ENSMUSP00000032259 TRANSLATION protein_coding - CCDS20582.1 1 199.0 0.0 3.1 9.6 45.8 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000030156 Cd69 ENSMUST00000204411 ENSMUSP00000144734 TRANSLATION protein_coding - - 1 158.0 0.0 2.9 0.0 45.8 0.0 -4,-5 0.002 2 11.598 MINOR ENSMUSG00000030156 Cd69 ENSMUST00000203727 - NO_TRANSLATION retained_intron ENSMUSG00000030156 Cd69 ENSMUST00000205190 - NO_TRANSLATION retained_intron ENSMUSG00000062694 Cav3 ENSMUST00000075477 ENSMUSP00000074922 TRANSLATION protein_coding - CCDS20406.1 1 151.0 0.0 2.0 20.0 196.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000044927 H1f10 ENSMUST00000056403 ENSMUSP00000060761 TRANSLATION protein_coding - CCDS20331.1 - 188.0 0.0 0.8 0.4 60.0 0.0 -4,-5 0.3669 3 8.0 ALTERNATIVE:2 ENSMUSG00000044927 H1f10 ENSMUST00000247848 ENSMUSP00000159534 TRANSLATION protein_coding - - - 239.0 0.0 0.8 0.0 60.0 0.0 -4,-1 0.7828 3 8.0 PRINCIPAL:2 ENSMUSG00000046806 Cyren ENSMUST00000118559 ENSMUSP00000113335 TRANSLATION protein_coding stop - 3 90.0 0.0 0.0 0.0 64.6 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000046806 Cyren ENSMUST00000115007 ENSMUSP00000110659 TRANSLATION protein_coding - CCDS19997.1 1 157.0 0.0 0.0 3.4 155.2 0.0 -4,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000046806 Cyren ENSMUST00000140458 - NO_TRANSLATION retained_intron ENSMUSG00000046806 Cyren ENSMUST00000115006 ENSMUSP00000110658 TRANSLATION protein_coding - CCDS85030.1 1 184.0 0.0 0.0 0.0 135.3 0.0 -4,-7 0.0578 - 4.806 MINOR ENSMUSG00000046806 Cyren ENSMUST00000055097 ENSMUSP00000053349 TRANSLATION protein_coding - CCDS19997.1 1 157.0 0.0 0.0 3.4 155.2 0.0 -4,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000072476 Rnf26rt ENSMUST00000097218 ENSMUSP00000126976 TRANSLATION protein_coding - - - 424.0 8.0 0.0 7.8 45.1 0.0 1,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029787 Avl9 ENSMUST00000204193 ENSMUSP00000145053 TRANSLATION nonsense_mediated_decay - - 3 91.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029787 Avl9 ENSMUST00000031805 ENSMUSP00000031805 TRANSLATION protein_coding - CCDS51789.1 1 649.0 0.0 0.0 7.4 522.9 0.0 -4,-5 1.0 17 8.0 PRINCIPAL:1 ENSMUSG00000029787 Avl9 ENSMUST00000177249 ENSMUSP00000144696 TRANSLATION protein_coding - - 1 222.0 0.0 0.0 0.0 289.1 0.0 -4,-5 0.0008 4 0.0 MINOR ENSMUSG00000029787 Avl9 ENSMUST00000205188 - NO_TRANSLATION retained_intron ENSMUSG00000029787 Avl9 ENSMUST00000176560 - NO_TRANSLATION retained_intron ENSMUSG00000030094 Xpc ENSMUST00000150279 ENSMUSP00000145777 TRANSLATION nonsense_mediated_decay start - 2 697.0 0.0 0.4 0.0 134.7 0.0 -4,-5 0.0043 12 -2.0 MINOR ENSMUSG00000030094 Xpc ENSMUST00000032182 ENSMUSP00000032182 TRANSLATION protein_coding - CCDS39569.1 1 930.0 0.0 1.0 0.1 282.4 0.0 -4,-5 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000030094 Xpc ENSMUST00000206476 ENSMUSP00000145683 TRANSLATION protein_coding stop - 3 81.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000071112 Spx ENSMUST00000141548 - NO_TRANSLATION retained_intron ENSMUSG00000071112 Spx ENSMUST00000123209 - NO_TRANSLATION retained_intron ENSMUSG00000071112 Spx ENSMUST00000126521 ENSMUSP00000118062 TRANSLATION protein_coding - CCDS85181.1 5 118.0 0.0 0.0 6.6 156.8 0.0 2,-2 1.0 - 4.0 PRINCIPAL:4 ENSMUSG00000071112 Spx ENSMUST00000211094 ENSMUSP00000147302 TRANSLATION protein_coding - - 5 116.0 0.0 0.0 6.6 162.1 0.0 2,-2 0.9522 - 4.0 ALTERNATIVE:1 ENSMUSG00000025823 Pdia4 ENSMUST00000077290 ENSMUSP00000076521 TRANSLATION protein_coding - CCDS20097.1 1 641.0 12.0 9.0 2.9 384.7 0.0 3,-2 1.0 38 19.0 PRINCIPAL:1 ENSMUSG00000025823 Pdia4 ENSMUST00000204029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089727 Klra8 ENSMUST00000014476 ENSMUSP00000014476 TRANSLATION protein_coding - CCDS51927.1 1 266.0 3.0 5.0 0.1 231.9 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094113 5430401F13Rik ENSMUST00000075020 ENSMUSP00000074539 TRANSLATION protein_coding - - 5 175.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.6285 - 0.0 PRINCIPAL:1 ENSMUSG00000094113 5430401F13Rik ENSMUST00000161385 ENSMUSP00000125129 TRANSLATION protein_coding - CCDS57458.1 1 175.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.9478 - 0.0 PRINCIPAL:1 ENSMUSG00000106403 Igkv20-101-2 ENSMUST00000200406 ENSMUSP00000142504 TRANSLATION IG_V_gene stop - - 113.0 0.0 1.3 0.0 46.8 0.0 3,-2 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000091620 Vmn2r23 ENSMUST00000172391 ENSMUSP00000126682 TRANSLATION protein_coding - CCDS51901.1 5 849.0 5.0 2.666 0.8 390.5 0.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000091620 Vmn2r23 ENSMUST00000233395 - NO_TRANSLATION retained_intron ENSMUSG00000091620 Vmn2r23 ENSMUST00000233267 ENSMUSP00000156872 TRANSLATION nonsense_mediated_decay - - - 188.0 5.0 0.678 0.0 40.6 0.0 3,-2 0.0006 - -2.0 MINOR ENSMUSG00000091620 Vmn2r23 ENSMUST00000233008 ENSMUSP00000156548 TRANSLATION nonsense_mediated_decay - - - 180.0 5.0 0.744 0.0 41.8 0.0 3,-2 0.0006 - -2.0 MINOR ENSMUSG00000091620 Vmn2r23 ENSMUST00000233414 - NO_TRANSLATION retained_intron ENSMUSG00000096461 Igkv14-130 ENSMUST00000196006 ENSMUSP00000143018 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.2 0.0 56.2 0.0 4,-1 0.8221 1 -2.0 PRINCIPAL:1 ENSMUSG00000038429 Usp5 ENSMUST00000142058 ENSMUSP00000117439 TRANSLATION protein_coding stop - 3 303.0 4.0 3.58 0.0 62.3 0.0 -4,-5 0.0009 8 -2.0 MINOR ENSMUSG00000038429 Usp5 ENSMUST00000146098 - NO_TRANSLATION retained_intron ENSMUSG00000038429 Usp5 ENSMUST00000047510 ENSMUSP00000041299 TRANSLATION protein_coding - CCDS20531.1 1 858.0 4.0 13.455 21.8 326.7 0.0 -4,-5 1.0 25 16.0 PRINCIPAL:4 ENSMUSG00000038429 Usp5 ENSMUST00000131805 - NO_TRANSLATION retained_intron ENSMUSG00000038429 Usp5 ENSMUST00000154189 - NO_TRANSLATION retained_intron ENSMUSG00000038429 Usp5 ENSMUST00000122110 ENSMUSP00000114000 TRANSLATION protein_coding - CCDS85157.1 1 835.0 4.0 13.455 21.8 327.0 0.0 -4,-5 0.9746 25 16.0 ALTERNATIVE:1 ENSMUSG00000038429 Usp5 ENSMUST00000129159 - NO_TRANSLATION retained_intron ENSMUSG00000038429 Usp5 ENSMUST00000141042 - NO_TRANSLATION retained_intron ENSMUSG00000038429 Usp5 ENSMUST00000153306 ENSMUSP00000118200 TRANSLATION protein_coding stop - 5 209.0 4.0 0.875 0.0 49.8 0.0 -4,-7 0.0 10 -2.0 MINOR ENSMUSG00000052131 Akr1b7 ENSMUST00000007449 ENSMUSP00000007449 TRANSLATION protein_coding - CCDS19993.1 1 316.0 29.0 8.25 34.7 197.3 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000098814 Igkv19-93 ENSMUST00000196863 ENSMUSP00000143363 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.25 0.0 61.7 0.0 4,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000015766 Eps8 ENSMUST00000139753 ENSMUSP00000145059 TRANSLATION protein_coding stop - 5 38.0 1.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000015766 Eps8 ENSMUST00000134630 ENSMUSP00000120648 TRANSLATION protein_coding stop - 3 14.0 1.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000015766 Eps8 ENSMUST00000111878 ENSMUSP00000107509 TRANSLATION protein_coding - CCDS20665.1 1 821.0 4.0 6.325 11.8 227.2 0.0 -4,-7 1.0 26 19.0 PRINCIPAL:1 ENSMUSG00000015766 Eps8 ENSMUST00000132920 ENSMUSP00000122517 TRANSLATION protein_coding stop - 5 329.0 4.0 2.375 0.0 184.5 0.0 -4,-7 0.0003 10 -2.0 MINOR ENSMUSG00000015766 Eps8 ENSMUST00000058210 ENSMUSP00000052776 TRANSLATION protein_coding - CCDS20665.1 1 821.0 4.0 6.325 11.8 227.2 0.0 -4,-7 1.0 26 19.0 PRINCIPAL:1 ENSMUSG00000015766 Eps8 ENSMUST00000205037 - NO_TRANSLATION retained_intron ENSMUSG00000015766 Eps8 ENSMUST00000203515 - NO_TRANSLATION retained_intron ENSMUSG00000015766 Eps8 ENSMUST00000153933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015766 Eps8 ENSMUST00000146442 ENSMUSP00000119997 TRANSLATION protein_coding stop - 2 189.0 4.0 2.375 0.0 179.8 0.0 -4,-7 0.0003 5 -2.0 MINOR ENSMUSG00000015766 Eps8 ENSMUST00000147526 ENSMUSP00000120044 TRANSLATION protein_coding stop - 1 587.0 4.0 4.125 0.0 227.2 0.0 -4,-7 0.0187 19 -2.0 MINOR ENSMUSG00000015766 Eps8 ENSMUST00000100841 ENSMUSP00000098402 TRANSLATION protein_coding - CCDS20665.1 1 821.0 4.0 6.325 11.8 227.2 0.0 -4,-7 1.0 26 19.0 PRINCIPAL:1 ENSMUSG00000015766 Eps8 ENSMUST00000127179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015766 Eps8 ENSMUST00000152046 - NO_TRANSLATION retained_intron ENSMUSG00000052631 Sh2d6 ENSMUST00000159577 ENSMUSP00000157033 TRANSLATION nonsense_mediated_decay - - 3 112.0 0.0 0.198 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000052631 Sh2d6 ENSMUST00000234038 ENSMUSP00000157110 TRANSLATION protein_coding - - - 250.0 0.0 3.542 0.0 37.0 0.0 -4,-2 0.7367 - 8.0 PRINCIPAL:2 ENSMUSG00000052631 Sh2d6 ENSMUST00000235004 ENSMUSP00000157366 TRANSLATION protein_coding - - - 250.0 0.0 3.542 0.0 37.0 0.0 -4,-2 0.7367 - 8.0 PRINCIPAL:2 ENSMUSG00000052631 Sh2d6 ENSMUST00000234220 ENSMUSP00000157185 TRANSLATION protein_coding - - - 276.0 0.0 3.542 0.0 37.0 0.0 -4,-2 0.05 - 8.0 ALTERNATIVE:2 ENSMUSG00000052631 Sh2d6 ENSMUST00000159877 ENSMUSP00000123776 TRANSLATION protein_coding - - 1 250.0 0.0 3.542 0.0 37.0 0.0 -4,-2 0.7367 - 8.0 PRINCIPAL:2 ENSMUSG00000052631 Sh2d6 ENSMUST00000234615 ENSMUSP00000157379 TRANSLATION protein_coding - - - 357.0 0.0 3.542 0.3 37.0 0.0 -4,-1 0.0839 1 8.0 ALTERNATIVE:2 ENSMUSG00000052631 Sh2d6 ENSMUST00000160123 ENSMUSP00000157091 TRANSLATION protein_coding - - 5 251.0 0.0 2.622 0.0 31.0 0.0 -4,-2 0.0867 - 4.158 MINOR ENSMUSG00000052631 Sh2d6 ENSMUST00000162561 ENSMUSP00000124673 TRANSLATION protein_coding - - 1 250.0 0.0 3.542 0.0 37.0 0.0 -4,-2 0.7367 - 8.0 PRINCIPAL:2 ENSMUSG00000052631 Sh2d6 ENSMUST00000160761 ENSMUSP00000157201 TRANSLATION nonsense_mediated_decay - - 5 213.0 0.0 0.198 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000005893 Nr2c2 ENSMUST00000146175 ENSMUSP00000138465 TRANSLATION nonsense_mediated_decay - - 1 501.0 8.0 4.066 0.0 189.0 0.0 -4,-7 0.0 15 -2.0 MINOR ENSMUSG00000005893 Nr2c2 ENSMUST00000204661 - NO_TRANSLATION retained_intron ENSMUSG00000005893 Nr2c2 ENSMUST00000113460 ENSMUSP00000109087 TRANSLATION protein_coding - CCDS20372.1 1 596.0 8.0 6.646 24.1 266.3 0.0 -4,-7 0.9397 17 17.948 ALTERNATIVE:1 ENSMUSG00000005893 Nr2c2 ENSMUST00000133133 ENSMUSP00000145094 TRANSLATION protein_coding stop - 2 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0208 - -2.0 MINOR ENSMUSG00000005893 Nr2c2 ENSMUST00000204349 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005893 Nr2c2 ENSMUST00000133321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005893 Nr2c2 ENSMUST00000204497 - NO_TRANSLATION retained_intron ENSMUSG00000005893 Nr2c2 ENSMUST00000113463 ENSMUSP00000109090 TRANSLATION protein_coding - CCDS85096.1 1 629.0 8.0 6.646 24.4 266.3 0.0 -4,-6 1.0 17 18.0 PRINCIPAL:4 ENSMUSG00000001376 Vps50 ENSMUST00000164052 ENSMUSP00000125872 TRANSLATION protein_coding - CCDS51713.1 1 929.0 0.0 2.8 0.0 651.5 0.0 -4,-6 0.0869 20 7.644 MINOR ENSMUSG00000001376 Vps50 ENSMUST00000001412 ENSMUSP00000001412 TRANSLATION protein_coding - CCDS39415.1 1 964.0 0.0 3.8 20.1 690.8 0.0 -4,-6 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000001376 Vps50 ENSMUST00000183532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001376 Vps50 ENSMUST00000183935 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001376 Vps50 ENSMUST00000184411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001376 Vps50 ENSMUST00000184461 - NO_TRANSLATION retained_intron ENSMUSG00000001376 Vps50 ENSMUST00000184780 - NO_TRANSLATION retained_intron ENSMUSG00000001376 Vps50 ENSMUST00000184959 - NO_TRANSLATION retained_intron ENSMUSG00000001376 Vps50 ENSMUST00000170873 ENSMUSP00000128323 TRANSLATION protein_coding - CCDS51714.1 1 938.0 0.0 2.8 0.0 650.8 0.0 -4,-6 0.1007 20 7.602 MINOR ENSMUSG00000030102 Itpr1 ENSMUST00000203262 ENSMUSP00000145177 TRANSLATION protein_coding start/stop - 5 225.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030102 Itpr1 ENSMUST00000203615 ENSMUSP00000144880 TRANSLATION protein_coding - - 5 2748.0 8.0 27.225 12.6 968.0 0.0 -4,-5 0.862 55 17.412 ALTERNATIVE:1 ENSMUSG00000030102 Itpr1 ENSMUST00000203638 ENSMUSP00000145522 TRANSLATION protein_coding start/stop - 5 313.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.0017 11 -2.0 MINOR ENSMUSG00000030102 Itpr1 ENSMUST00000203687 ENSMUSP00000145339 TRANSLATION protein_coding start/stop - 5 152.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030102 Itpr1 ENSMUST00000203995 - NO_TRANSLATION retained_intron ENSMUSG00000030102 Itpr1 ENSMUST00000032192 ENSMUSP00000032192 TRANSLATION protein_coding - CCDS51869.1 1 2749.0 8.0 27.225 14.6 968.0 0.0 -4,-5 1.0 56 18.0 PRINCIPAL:3 ENSMUSG00000030102 Itpr1 ENSMUST00000212125 ENSMUSP00000148284 TRANSLATION nonsense_mediated_decay start - 5 213.0 0.0 3.85 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030102 Itpr1 ENSMUST00000203936 ENSMUSP00000145526 TRANSLATION protein_coding start/stop - 3 215.0 4.0 4.37 0.0 238.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030102 Itpr1 ENSMUST00000203530 - NO_TRANSLATION retained_intron ENSMUSG00000030102 Itpr1 ENSMUST00000205048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030102 Itpr1 ENSMUST00000205005 - NO_TRANSLATION retained_intron ENSMUSG00000030102 Itpr1 ENSMUST00000205053 - NO_TRANSLATION retained_intron ENSMUSG00000030102 Itpr1 ENSMUST00000203288 - NO_TRANSLATION retained_intron ENSMUSG00000030340 Scnn1a ENSMUST00000176365 ENSMUSP00000135467 TRANSLATION protein_coding stop - 5 143.0 0.0 1.55 0.0 90.4 3.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030340 Scnn1a ENSMUST00000176655 ENSMUSP00000135798 TRANSLATION protein_coding - - 5 593.0 0.0 9.38 0.0 332.4 5.0 1,-3 0.1453 4 6.0 MINOR ENSMUSG00000030340 Scnn1a ENSMUST00000177329 ENSMUSP00000134929 TRANSLATION protein_coding - - 5 674.0 0.0 9.38 0.0 356.2 5.0 -4,-5 0.146 5 6.0 ALTERNATIVE:2 ENSMUSG00000030340 Scnn1a ENSMUST00000176442 ENSMUSP00000135336 TRANSLATION protein_coding stop - 5 591.0 0.0 9.38 0.0 332.4 5.0 1,-3 0.1453 4 -2.0 MINOR ENSMUSG00000030340 Scnn1a ENSMUST00000176110 ENSMUSP00000134940 TRANSLATION protein_coding - - 5 674.0 0.0 9.38 0.0 356.2 5.0 -4,-5 0.146 5 6.0 ALTERNATIVE:2 ENSMUSG00000030340 Scnn1a ENSMUST00000081440 ENSMUSP00000080164 TRANSLATION protein_coding - - 1 699.0 0.0 9.38 0.1 356.2 5.0 -4,-5 0.8123 5 6.0 PRINCIPAL:2 ENSMUSG00000030340 Scnn1a ENSMUST00000175966 ENSMUSP00000135551 TRANSLATION nonsense_mediated_decay - - 5 275.0 0.0 1.55 0.0 93.1 3.0 -4,-5 0.003 2 -2.0 MINOR ENSMUSG00000000440 Pparg ENSMUST00000171644 ENSMUSP00000131962 TRANSLATION protein_coding - CCDS51876.1 1 475.0 8.0 5.75 21.6 268.5 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000000440 Pparg ENSMUST00000203308 - NO_TRANSLATION retained_intron ENSMUSG00000000440 Pparg ENSMUST00000205213 ENSMUSP00000144975 TRANSLATION protein_coding stop - 3 222.0 8.0 3.0 0.0 212.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000440 Pparg ENSMUST00000203732 ENSMUSP00000145525 TRANSLATION protein_coding - CCDS51876.1 1 475.0 8.0 5.75 21.6 268.5 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000000440 Pparg ENSMUST00000203896 - NO_TRANSLATION retained_intron ENSMUSG00000000440 Pparg ENSMUST00000000450 ENSMUSP00000000450 TRANSLATION protein_coding - CCDS20439.1 1 505.0 8.0 5.75 8.7 268.5 0.0 -4,-5 0.5406 2 19.496 MINOR ENSMUSG00000000440 Pparg ENSMUST00000204305 ENSMUSP00000145083 TRANSLATION protein_coding stop - 3 96.0 0.0 0.0 0.0 116.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029843 Slc13a4 ENSMUST00000122829 - NO_TRANSLATION retained_intron ENSMUSG00000029843 Slc13a4 ENSMUST00000031868 ENSMUSP00000031868 TRANSLATION protein_coding - CCDS20000.1 1 625.0 0.0 5.92 9.1 343.7 0.0 -1,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029843 Slc13a4 ENSMUST00000155366 - NO_TRANSLATION retained_intron ENSMUSG00000030345 Dyrk4 ENSMUST00000032495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030345 Dyrk4 ENSMUST00000078521 ENSMUSP00000077606 TRANSLATION protein_coding - CCDS20559.2 1 632.0 18.0 8.63 1.0 185.5 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030345 Dyrk4 ENSMUST00000171945 ENSMUSP00000128180 TRANSLATION nonsense_mediated_decay start - 5 60.0 0.0 1.165 0.0 49.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000012535 Tnpo3 ENSMUST00000170647 ENSMUSP00000133115 TRANSLATION protein_coding start - 1 247.0 0.0 4.896 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000012535 Tnpo3 ENSMUST00000169302 - NO_TRANSLATION retained_intron ENSMUSG00000012535 Tnpo3 ENSMUST00000115251 ENSMUSP00000110906 TRANSLATION protein_coding - CCDS85023.1 5 929.0 0.0 19.546 24.1 93.9 0.0 -4,-6 1.0 18 12.0 ALTERNATIVE:1 ENSMUSG00000012535 Tnpo3 ENSMUST00000171865 - NO_TRANSLATION retained_intron ENSMUSG00000012535 Tnpo3 ENSMUST00000012679 ENSMUSP00000012679 TRANSLATION protein_coding - CCDS19963.1 1 923.0 0.0 19.48 24.1 93.9 0.0 -4,-6 0.9857 20 11.868 PRINCIPAL:3 ENSMUSG00000012535 Tnpo3 ENSMUST00000170350 ENSMUSP00000131411 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000012535 Tnpo3 ENSMUST00000170634 - NO_TRANSLATION retained_intron ENSMUSG00000012535 Tnpo3 ENSMUST00000167056 - NO_TRANSLATION retained_intron ENSMUSG00000012535 Tnpo3 ENSMUST00000201797 - NO_TRANSLATION retained_intron ENSMUSG00000012535 Tnpo3 ENSMUST00000166844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012535 Tnpo3 ENSMUST00000164325 - NO_TRANSLATION retained_intron ENSMUSG00000038065 Mturn ENSMUST00000185518 - NO_TRANSLATION retained_intron ENSMUSG00000038065 Mturn ENSMUST00000187701 ENSMUSP00000140358 TRANSLATION protein_coding - CCDS80537.1 5 148.0 7.0 2.5 0.4 261.4 0.0 -4,-5 0.1659 1 17.586 MINOR ENSMUSG00000038065 Mturn ENSMUST00000190641 ENSMUSP00000140586 TRANSLATION protein_coding - CCDS20158.2 1 131.0 7.0 2.5 26.6 268.3 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000049037 Clec4a1 ENSMUST00000060484 ENSMUSP00000062441 TRANSLATION protein_coding - CCDS20507.1 1 245.0 6.0 3.25 0.1 73.9 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000062818 Vmn1r51 ENSMUST00000228433 - NO_TRANSLATION retained_intron ENSMUSG00000062818 Vmn1r51 ENSMUST00000226977 ENSMUSP00000153783 TRANSLATION protein_coding - CCDS39560.1 - 329.0 0.0 0.0 0.0 451.7 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062818 Vmn1r51 ENSMUST00000227911 ENSMUSP00000154582 TRANSLATION protein_coding - CCDS39560.1 - 329.0 0.0 0.0 0.0 451.7 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062818 Vmn1r51 ENSMUST00000228880 ENSMUSP00000154676 TRANSLATION protein_coding - CCDS39560.1 - 329.0 0.0 0.0 0.0 451.7 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062818 Vmn1r51 ENSMUST00000227145 - NO_TRANSLATION retained_intron ENSMUSG00000062818 Vmn1r51 ENSMUST00000226542 ENSMUSP00000153862 TRANSLATION protein_coding - CCDS39560.1 - 329.0 0.0 0.0 0.0 451.7 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062818 Vmn1r51 ENSMUST00000227766 ENSMUSP00000153813 TRANSLATION protein_coding - CCDS39560.1 - 329.0 0.0 0.0 0.0 451.7 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062818 Vmn1r51 ENSMUST00000227876 ENSMUSP00000154223 TRANSLATION protein_coding - CCDS39560.1 - 329.0 0.0 0.0 0.0 451.7 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062818 Vmn1r51 ENSMUST00000072859 ENSMUSP00000072637 TRANSLATION protein_coding - CCDS39560.1 - 329.0 0.0 0.0 0.0 451.7 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062818 Vmn1r51 ENSMUST00000174204 ENSMUSP00000133870 TRANSLATION protein_coding - CCDS39560.1 1 329.0 0.0 0.0 0.0 451.7 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062818 Vmn1r51 ENSMUST00000228590 - NO_TRANSLATION retained_intron ENSMUSG00000062818 Vmn1r51 ENSMUST00000227988 - NO_TRANSLATION retained_intron ENSMUSG00000062818 Vmn1r51 ENSMUST00000227109 ENSMUSP00000153842 TRANSLATION protein_coding - CCDS39560.1 - 329.0 0.0 0.0 0.0 451.7 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068699 Flnc ENSMUST00000101617 ENSMUSP00000099139 TRANSLATION protein_coding - CCDS80503.1 1 2693.0 0.0 35.5 12.1 1439.1 0.0 -4,-5 0.9816 108 11.7 ALTERNATIVE:1 ENSMUSG00000068699 Flnc ENSMUST00000148404 - NO_TRANSLATION retained_intron ENSMUSG00000068699 Flnc ENSMUST00000065090 ENSMUSP00000064163 TRANSLATION protein_coding - CCDS39452.1 1 2726.0 0.0 35.5 13.0 1439.1 0.0 -4,-5 1.0 108 12.0 PRINCIPAL:4 ENSMUSG00000064080 Fbln2 ENSMUST00000137029 - NO_TRANSLATION retained_intron ENSMUSG00000064080 Fbln2 ENSMUST00000153364 ENSMUSP00000120101 TRANSLATION protein_coding stop - 5 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0311 - -2.0 MINOR ENSMUSG00000064080 Fbln2 ENSMUST00000132021 ENSMUSP00000116456 TRANSLATION protein_coding stop - 5 69.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000064080 Fbln2 ENSMUST00000134286 - NO_TRANSLATION retained_intron ENSMUSG00000064080 Fbln2 ENSMUST00000134974 ENSMUSP00000116302 TRANSLATION protein_coding stop - 2 76.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000064080 Fbln2 ENSMUST00000203406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064080 Fbln2 ENSMUST00000147371 - NO_TRANSLATION retained_intron ENSMUSG00000064080 Fbln2 ENSMUST00000113498 ENSMUSP00000109126 TRANSLATION protein_coding - CCDS39567.1 1 1174.0 48.0 7.8 0.1 339.3 0.0 4,-1 0.4057 25 12.756 MINOR ENSMUSG00000064080 Fbln2 ENSMUST00000041544 ENSMUSP00000048334 TRANSLATION protein_coding - CCDS39566.1 1 1221.0 52.0 8.064 0.1 373.5 0.0 4,-1 1.0 26 18.0 PRINCIPAL:1 ENSMUSG00000045160 Bola3 ENSMUST00000127769 - NO_TRANSLATION retained_intron ENSMUSG00000045160 Bola3 ENSMUST00000136501 ENSMUSP00000118348 TRANSLATION protein_coding - CCDS20278.1 1 110.0 0.0 2.5 4.2 44.4 0.0 -2,1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000045160 Bola3 ENSMUST00000133122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045160 Bola3 ENSMUST00000055875 - NO_TRANSLATION retained_intron ENSMUSG00000045160 Bola3 ENSMUST00000122216 ENSMUSP00000113439 TRANSLATION protein_coding - - 1 95.0 0.0 2.5 0.0 44.4 0.0 -4,-7 0.0194 1 12.0 MINOR ENSMUSG00000045160 Bola3 ENSMUST00000120040 ENSMUSP00000112582 TRANSLATION protein_coding - - 3 136.0 0.0 2.5 0.0 44.4 0.0 -4,-6 0.0074 1 12.0 MINOR ENSMUSG00000045160 Bola3 ENSMUST00000151329 - NO_TRANSLATION retained_intron ENSMUSG00000045160 Bola3 ENSMUST00000148875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045160 Bola3 ENSMUST00000134765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030269 Mtmr14 ENSMUST00000134945 ENSMUSP00000118001 TRANSLATION protein_coding start - 1 264.0 0.0 0.5445 0.0 0.0 0.0 1,-3 0.0095 4 -2.0 MINOR ENSMUSG00000030269 Mtmr14 ENSMUST00000203385 ENSMUSP00000144940 TRANSLATION nonsense_mediated_decay start - 5 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030269 Mtmr14 ENSMUST00000137772 ENSMUSP00000119000 TRANSLATION protein_coding start/stop - 5 298.0 7.0 0.5445 0.0 21.9 0.0 -4,-7 0.0461 2 -2.0 MINOR ENSMUSG00000030269 Mtmr14 ENSMUST00000156141 ENSMUSP00000116918 TRANSLATION protein_coding stop - 5 189.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000030269 Mtmr14 ENSMUST00000148523 ENSMUSP00000115808 TRANSLATION nonsense_mediated_decay start - 5 119.0 7.0 0.7425 0.0 21.9 0.0 -4,-7 0.0612 1 -2.0 MINOR ENSMUSG00000030269 Mtmr14 ENSMUST00000142938 ENSMUSP00000121136 TRANSLATION nonsense_mediated_decay - - 2 140.0 0.0 0.0 0.0 0.0 0.0 -2,0 0.0012 4 -2.0 MINOR ENSMUSG00000030269 Mtmr14 ENSMUST00000113146 ENSMUSP00000108771 TRANSLATION protein_coding - CCDS20412.2 1 648.0 7.0 0.5445 1.4 21.9 0.0 -2,0 1.0 13 17.398 PRINCIPAL:1 ENSMUSG00000030269 Mtmr14 ENSMUST00000129883 ENSMUSP00000114575 TRANSLATION nonsense_mediated_decay - - 1 331.0 0.0 0.0 0.0 0.0 0.0 -2,0 0.0062 9 -2.0 MINOR ENSMUSG00000030269 Mtmr14 ENSMUST00000151149 ENSMUSP00000116882 TRANSLATION protein_coding start - 3 142.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000030269 Mtmr14 ENSMUST00000144976 ENSMUSP00000117843 TRANSLATION nonsense_mediated_decay start - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000076493 Trbj2-2 ENSMUST00000103294 ENSMUSP00000141782 TRANSLATION TR_J_gene start/stop - - 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000029663 Gngt1 ENSMUST00000031673 ENSMUSP00000031673 TRANSLATION protein_coding - CCDS39418.1 1 74.0 0.0 2.0 30.4 71.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029663 Gngt1 ENSMUST00000159369 - NO_TRANSLATION retained_intron ENSMUSG00000055799 Tcf7l1 ENSMUST00000141743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055799 Tcf7l1 ENSMUST00000149446 ENSMUSP00000115060 TRANSLATION protein_coding start/stop - 3 154.0 0.0 0.0 0.0 125.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000055799 Tcf7l1 ENSMUST00000069536 ENSMUSP00000069403 TRANSLATION protein_coding - CCDS20245.1 1 585.0 0.0 2.75 0.0 370.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000055799 Tcf7l1 ENSMUST00000182651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055799 Tcf7l1 ENSMUST00000114053 ENSMUSP00000109687 TRANSLATION protein_coding - CCDS39517.1 1 599.0 0.0 2.75 0.0 369.5 0.0 -4,-5 0.348 2 8.0 ALTERNATIVE:2 ENSMUSG00000055430 Nap1l5 ENSMUST00000059539 ENSMUSP00000062780 TRANSLATION protein_coding - CCDS20197.1 - 156.0 0.0 1.1 0.3 42.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000055430 Nap1l5 ENSMUST00000205101 ENSMUSP00000145365 TRANSLATION protein_coding start - 2 58.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029815 Malsu1 ENSMUST00000139726 - NO_TRANSLATION retained_intron ENSMUSG00000029815 Malsu1 ENSMUST00000031839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029815 Malsu1 ENSMUST00000205243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029815 Malsu1 ENSMUST00000114500 ENSMUSP00000110144 TRANSLATION nonsense_mediated_decay - - 1 80.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000029815 Malsu1 ENSMUST00000128616 ENSMUSP00000122941 TRANSLATION protein_coding - CCDS51768.1 1 228.0 0.0 2.75 6.2 91.3 0.0 -2,2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000062751 Prss1 ENSMUST00000031910 ENSMUSP00000031910 TRANSLATION protein_coding - CCDS20049.1 1 246.0 21.0 4.0 33.9 272.7 0.0 4,-1 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000042097 Zfp239 ENSMUST00000079405 ENSMUSP00000078374 TRANSLATION protein_coding - CCDS20466.1 1 201.0 28.0 1.0 0.1 174.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000042097 Zfp239 ENSMUST00000136316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042097 Zfp239 ENSMUST00000172088 ENSMUSP00000128270 TRANSLATION protein_coding - CCDS20466.1 2 201.0 28.0 1.0 0.1 174.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000042097 Zfp239 ENSMUST00000112857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042097 Zfp239 ENSMUST00000141657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042097 Zfp239 ENSMUST00000150936 - NO_TRANSLATION retained_intron ENSMUSG00000042097 Zfp239 ENSMUST00000134619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002930 Ppp1r17 ENSMUST00000052827 ENSMUSP00000059708 TRANSLATION protein_coding - CCDS20169.1 1 159.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.8672 4 1.0 PRINCIPAL:1 ENSMUSG00000073028 Igkv4-71 ENSMUST00000196201 ENSMUSP00000142768 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 56.4 0.0 -1,-4 0.7899 - -2.0 PRINCIPAL:1 ENSMUSG00000071481 Or2a52 ENSMUST00000060243 ENSMUSP00000058147 TRANSLATION protein_coding - CCDS20088.1 - 310.0 0.0 1.0 12.5 201.1 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071481 Or2a52 ENSMUST00000205175 ENSMUSP00000145490 TRANSLATION protein_coding - CCDS20088.1 5 310.0 0.0 1.0 12.5 201.1 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032766 Gng11 ENSMUST00000031670 ENSMUSP00000031670 TRANSLATION protein_coding - CCDS39419.1 1 73.0 0.0 2.0 30.4 69.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000045534 Kcna5 ENSMUST00000060972 ENSMUSP00000055673 TRANSLATION protein_coding - CCDS20554.1 - 602.0 0.0 0.8 3.7 268.7 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000068299 Nat8f4 ENSMUST00000095757 ENSMUSP00000093430 TRANSLATION protein_coding - CCDS39540.1 1 226.0 22.0 2.0 4.4 51.9 1.0 -4,-7 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000068299 Nat8f4 ENSMUST00000159755 ENSMUSP00000124071 TRANSLATION protein_coding - CCDS51831.1 2 136.0 0.0 1.0 0.0 0.0 1.0 -4,-7 0.0202 1 3.0 MINOR ENSMUSG00000029781 Fkbp9 ENSMUST00000147159 - NO_TRANSLATION retained_intron ENSMUSG00000029781 Fkbp9 ENSMUST00000031795 ENSMUSP00000031795 TRANSLATION protein_coding - CCDS39494.1 1 570.0 0.0 10.0 9.2 384.1 0.0 3,-2 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000038301 Snx10 ENSMUST00000140560 ENSMUSP00000122639 TRANSLATION protein_coding stop - 5 96.0 0.0 2.745 0.0 58.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038301 Snx10 ENSMUST00000049152 ENSMUSP00000044165 TRANSLATION protein_coding - CCDS20136.1 1 201.0 0.0 4.075 12.3 87.9 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000038301 Snx10 ENSMUST00000149024 ENSMUSP00000138139 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 1.179 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038301 Snx10 ENSMUST00000114439 ENSMUSP00000110082 TRANSLATION protein_coding - CCDS20136.1 1 201.0 0.0 4.075 12.3 87.9 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000038301 Snx10 ENSMUST00000137212 ENSMUSP00000117914 TRANSLATION protein_coding stop - 3 177.0 0.0 4.075 0.0 87.9 0.0 -4,-5 0.0083 4 -2.0 MINOR ENSMUSG00000038301 Snx10 ENSMUST00000155724 - NO_TRANSLATION retained_intron ENSMUSG00000038301 Snx10 ENSMUST00000179365 ENSMUSP00000136974 TRANSLATION protein_coding - CCDS20136.1 1 201.0 0.0 4.075 12.3 87.9 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000063478 Tas2r114 ENSMUST00000080619 ENSMUSP00000079453 TRANSLATION protein_coding - CCDS20613.1 - 309.0 0.0 0.0 6.2 340.5 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000029811 Aoc1 ENSMUST00000161184 - NO_TRANSLATION retained_intron ENSMUSG00000029811 Aoc1 ENSMUST00000167529 ENSMUSP00000128816 TRANSLATION protein_coding - CCDS51767.1 5 756.0 15.0 4.8 1.9 573.1 0.0 3,-2 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000029811 Aoc1 ENSMUST00000204856 ENSMUSP00000144764 TRANSLATION protein_coding stop - 3 250.0 1.0 1.0 0.0 152.0 0.0 -2,-3 0.0 3 -2.0 MINOR ENSMUSG00000029811 Aoc1 ENSMUST00000031835 ENSMUSP00000031835 TRANSLATION protein_coding - CCDS51767.1 1 756.0 15.0 4.8 1.9 573.1 0.0 3,-2 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000029811 Aoc1 ENSMUST00000162948 ENSMUSP00000124085 TRANSLATION protein_coding - CCDS51767.1 1 756.0 15.0 4.8 1.9 573.1 0.0 3,-2 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000001157 Gmcl1 ENSMUST00000113679 ENSMUSP00000109309 TRANSLATION protein_coding - - 1 199.0 0.0 3.0 0.0 40.1 0.0 -4,-7 0.0 2 3.246 MINOR ENSMUSG00000001157 Gmcl1 ENSMUST00000135880 - NO_TRANSLATION retained_intron ENSMUSG00000001157 Gmcl1 ENSMUST00000001185 ENSMUSP00000001185 TRANSLATION protein_coding - CCDS20316.1 1 524.0 0.0 11.75 11.0 74.1 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000001157 Gmcl1 ENSMUST00000203741 - NO_TRANSLATION retained_intron ENSMUSG00000023140 Reg2 ENSMUST00000203657 ENSMUSP00000145184 TRANSLATION protein_coding stop - 3 131.0 2.0 2.65 0.0 46.9 0.0 4,-1 0.0009 1 -2.0 MINOR ENSMUSG00000023140 Reg2 ENSMUST00000023906 ENSMUSP00000023906 TRANSLATION protein_coding - CCDS20256.1 1 173.0 3.0 4.15 1.0 76.2 0.0 4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000076549 Igkv4-68 ENSMUST00000103350 ENSMUSP00000100151 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 60.4 0.0 0,-3 0.7904 - -2.0 PRINCIPAL:1 ENSMUSG00000030120 Mlf2 ENSMUST00000203021 ENSMUSP00000145163 TRANSLATION protein_coding stop - 3 92.0 0.0 0.375 0.0 61.8 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000030120 Mlf2 ENSMUST00000204534 - NO_TRANSLATION retained_intron ENSMUSG00000030120 Mlf2 ENSMUST00000180095 ENSMUSP00000135920 TRANSLATION protein_coding - CCDS20538.1 1 247.0 0.0 2.475 20.0 218.1 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000030120 Mlf2 ENSMUST00000204177 - NO_TRANSLATION retained_intron ENSMUSG00000030120 Mlf2 ENSMUST00000204815 - NO_TRANSLATION retained_intron ENSMUSG00000030120 Mlf2 ENSMUST00000032214 ENSMUSP00000032214 TRANSLATION protein_coding - CCDS20538.1 1 247.0 0.0 2.475 20.0 218.1 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000030120 Mlf2 ENSMUST00000203060 - NO_TRANSLATION retained_intron ENSMUSG00000030120 Mlf2 ENSMUST00000203133 ENSMUSP00000145283 TRANSLATION protein_coding stop - 2 116.0 0.0 0.375 0.0 56.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000079263 Gm6614 ENSMUST00000181791 ENSMUSP00000137696 TRANSLATION protein_coding - CCDS39692.1 5 650.0 0.0 0.0 3.5 577.1 11.0 -1,-4 0.5493 1 6.693 MINOR ENSMUSG00000079263 Gm6614 ENSMUST00000111832 ENSMUSP00000107463 TRANSLATION protein_coding - CCDS39692.1 5 650.0 0.0 0.0 3.5 577.1 11.0 -1,-4 0.5493 1 6.693 MINOR ENSMUSG00000079263 Gm6614 ENSMUST00000181628 ENSMUSP00000137967 TRANSLATION protein_coding - - 5 670.0 0.0 0.0 11.8 577.1 11.0 -4,-7 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000076540 Igkv4-80 ENSMUST00000103341 ENSMUSP00000100142 TRANSLATION IG_V_gene stop - - 116.0 0.0 1.0 0.0 59.6 0.0 0,-3 0.7904 1 -2.0 PRINCIPAL:1 ENSMUSG00000057981 Vmn1r12 ENSMUST00000227581 ENSMUSP00000154078 TRANSLATION protein_coding - - - 263.0 0.0 0.0 0.0 173.0 5.0 -4,-5 0.0327 - 0.666 MINOR ENSMUSG00000057981 Vmn1r12 ENSMUST00000073384 ENSMUSP00000073098 TRANSLATION protein_coding - CCDS51794.1 - 307.0 0.0 0.0 0.0 182.6 6.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000057981 Vmn1r12 ENSMUST00000226866 ENSMUSP00000154607 TRANSLATION protein_coding - CCDS51794.1 - 307.0 0.0 0.0 0.0 182.6 6.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000030155 Clec2e ENSMUST00000032258 ENSMUSP00000032258 TRANSLATION protein_coding - CCDS39656.1 1 216.0 0.0 2.832 0.3 49.4 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072780 Vmn2r24 ENSMUST00000233759 ENSMUSP00000156764 TRANSLATION protein_coding - - - 585.0 5.0 2.96 0.0 312.7 7.0 0,-3 0.0099 - 12.014 MINOR ENSMUSG00000072780 Vmn2r24 ENSMUST00000075095 ENSMUSP00000074602 TRANSLATION protein_coding - CCDS51902.1 5 854.0 5.0 3.28 0.1 385.1 7.0 0,-3 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000072780 Vmn2r24 ENSMUST00000232985 ENSMUSP00000156600 TRANSLATION protein_coding - - - 567.0 5.0 1.3 0.0 112.5 0.0 0,-3 0.0006 - 7.04 MINOR ENSMUSG00000029822 Osbpl3 ENSMUST00000146341 ENSMUSP00000114472 TRANSLATION protein_coding stop - 3 144.0 0.0 1.258 0.0 36.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029822 Osbpl3 ENSMUST00000203907 ENSMUSP00000145249 TRANSLATION protein_coding start/stop - 3 246.0 0.0 0.16 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000029822 Osbpl3 ENSMUST00000133141 - NO_TRANSLATION retained_intron ENSMUSG00000029822 Osbpl3 ENSMUST00000141466 - NO_TRANSLATION retained_intron ENSMUSG00000029822 Osbpl3 ENSMUST00000154333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029822 Osbpl3 ENSMUST00000114468 ENSMUSP00000110112 TRANSLATION protein_coding - CCDS39489.1 1 855.0 0.0 9.758 9.0 482.8 0.0 -4,-7 0.8162 13 9.872 MINOR ENSMUSG00000029822 Osbpl3 ENSMUST00000071728 ENSMUSP00000071643 TRANSLATION protein_coding - CCDS51771.1 1 819.0 0.0 9.758 9.0 482.8 0.0 -4,-7 0.7685 12 9.872 MINOR ENSMUSG00000029822 Osbpl3 ENSMUST00000090019 ENSMUSP00000087473 TRANSLATION protein_coding - CCDS85046.1 5 886.0 0.0 9.758 18.1 482.8 0.0 -4,-7 1.0 14 12.0 PRINCIPAL:3 ENSMUSG00000029822 Osbpl3 ENSMUST00000136926 ENSMUSP00000144934 TRANSLATION protein_coding stop - 3 76.0 0.0 0.598 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029822 Osbpl3 ENSMUST00000114466 ENSMUSP00000110110 TRANSLATION protein_coding - - 5 850.0 0.0 9.758 17.2 482.8 0.0 -4,-7 0.7986 13 11.788 ALTERNATIVE:1 ENSMUSG00000018656 Tcaf3 ENSMUST00000134707 ENSMUSP00000123321 TRANSLATION protein_coding stop - 5 222.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018656 Tcaf3 ENSMUST00000069023 ENSMUSP00000064060 TRANSLATION protein_coding - CCDS20074.1 1 914.0 2.0 7.5 0.4 261.0 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000018656 Tcaf3 ENSMUST00000151898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030217 Art4 ENSMUST00000032341 ENSMUSP00000032341 TRANSLATION protein_coding - CCDS20658.1 1 300.0 1.0 1.0 0.1 163.1 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000063870 Chd4 ENSMUST00000112390 ENSMUSP00000108009 TRANSLATION protein_coding - - 5 1922.0 7.0 20.93 0.0 1085.3 0.0 -4,-5 0.5566 33 14.0 ALTERNATIVE:2 ENSMUSG00000063870 Chd4 ENSMUST00000155932 - NO_TRANSLATION retained_intron ENSMUSG00000063870 Chd4 ENSMUST00000112392 ENSMUSP00000108011 TRANSLATION protein_coding - - 5 1902.0 7.0 20.63 0.0 1085.3 0.0 -4,-5 0.4889 33 13.4 ALTERNATIVE:2 ENSMUSG00000063870 Chd4 ENSMUST00000124317 ENSMUSP00000120704 TRANSLATION protein_coding start/stop - 5 444.0 0.0 1.33 0.0 300.5 0.0 -4,-7 0.0 11 -2.0 MINOR ENSMUSG00000063870 Chd4 ENSMUST00000155261 ENSMUSP00000122806 TRANSLATION protein_coding stop - 1 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063870 Chd4 ENSMUST00000132794 - NO_TRANSLATION retained_intron ENSMUSG00000063870 Chd4 ENSMUST00000056889 ENSMUSP00000060054 TRANSLATION protein_coding - CCDS20543.1 1 1915.0 7.0 20.93 0.0 1085.3 0.0 -4,-5 1.0 33 14.0 PRINCIPAL:2 ENSMUSG00000063870 Chd4 ENSMUST00000138968 - NO_TRANSLATION retained_intron ENSMUSG00000042717 Ppp1r3a ENSMUST00000045096 ENSMUSP00000049054 TRANSLATION protein_coding - CCDS19917.1 1 1089.0 0.0 0.8 0.1 102.1 0.0 -4,-5 1.0 38 12.0 PRINCIPAL:1 ENSMUSG00000032827 Ppp1r9a ENSMUST00000168998 ENSMUSP00000126643 TRANSLATION protein_coding - - 1 642.0 0.0 4.3 0.0 49.3 0.0 -4,-2 0.0 12 2.198 MINOR ENSMUSG00000032827 Ppp1r9a ENSMUST00000035813 ENSMUSP00000046906 TRANSLATION protein_coding - CCDS19897.1 1 1095.0 0.0 6.6 0.1 106.1 0.0 -4,-2 1.0 21 8.0 PRINCIPAL:2 ENSMUSG00000032827 Ppp1r9a ENSMUST00000065842 - NO_TRANSLATION retained_intron ENSMUSG00000032827 Ppp1r9a ENSMUST00000177456 ENSMUSP00000134943 TRANSLATION protein_coding - - 5 1292.0 0.0 6.6 0.1 106.1 0.0 -4,-2 0.3409 25 8.0 ALTERNATIVE:2 ENSMUSG00000032827 Ppp1r9a ENSMUST00000177338 ENSMUSP00000135634 TRANSLATION protein_coding stop - 1 447.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0026 8 -2.0 MINOR ENSMUSG00000032827 Ppp1r9a ENSMUST00000176263 ENSMUSP00000134937 TRANSLATION nonsense_mediated_decay - - 5 977.0 0.0 4.3 0.0 49.3 0.0 -4,-2 0.0123 20 -2.0 MINOR ENSMUSG00000032827 Ppp1r9a ENSMUST00000176729 ENSMUSP00000134909 TRANSLATION nonsense_mediated_decay start - 1 232.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032827 Ppp1r9a ENSMUST00000176136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032827 Ppp1r9a ENSMUST00000164110 - NO_TRANSLATION retained_intron ENSMUSG00000032827 Ppp1r9a ENSMUST00000175889 ENSMUSP00000135629 TRANSLATION protein_coding stop - 1 1042.0 0.0 5.8 0.0 100.1 0.0 -4,-2 0.0484 21 -2.0 MINOR ENSMUSG00000032827 Ppp1r9a ENSMUST00000175962 ENSMUSP00000135360 TRANSLATION protein_coding - - 1 533.0 0.0 0.5 0.0 0.0 0.0 -4,-2 0.0013 9 0.0 MINOR ENSMUSG00000032827 Ppp1r9a ENSMUST00000177153 ENSMUSP00000135485 TRANSLATION nonsense_mediated_decay - - 5 955.0 0.0 4.3 0.0 49.3 0.0 -4,-2 0.0118 20 -2.0 MINOR ENSMUSG00000030207 Fam234b ENSMUST00000151071 ENSMUSP00000125359 TRANSLATION protein_coding stop - 3 74.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0211 - -2.0 MINOR ENSMUSG00000030207 Fam234b ENSMUST00000111915 ENSMUSP00000107546 TRANSLATION protein_coding - CCDS39681.1 1 624.0 8.0 0.0 13.8 0.0 1.0 -4,-5 1.0 9 10.0 PRINCIPAL:1 ENSMUSG00000030207 Fam234b ENSMUST00000151951 - NO_TRANSLATION retained_intron ENSMUSG00000030207 Fam234b ENSMUST00000111916 ENSMUSP00000107547 TRANSLATION protein_coding - - 1 658.0 8.0 0.0 0.0 0.0 1.0 -4,-5 0.0588 9 6.0 MINOR ENSMUSG00000030207 Fam234b ENSMUST00000130612 ENSMUSP00000125353 TRANSLATION protein_coding stop - 3 64.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0211 - -2.0 MINOR ENSMUSG00000030259 Rassf8 ENSMUST00000140966 ENSMUSP00000122684 TRANSLATION protein_coding stop - 2 79.0 0.0 2.0 0.0 37.3 0.0 -4,-6 0.0168 1 -2.0 MINOR ENSMUSG00000030259 Rassf8 ENSMUST00000111704 ENSMUSP00000107333 TRANSLATION protein_coding - CCDS20696.1 5 419.0 0.0 2.0 24.9 32.7 0.0 -4,-6 1.0 4 15.262 PRINCIPAL:1 ENSMUSG00000030259 Rassf8 ENSMUST00000058538 ENSMUSP00000130671 TRANSLATION protein_coding start - - 102.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030259 Rassf8 ENSMUST00000032388 ENSMUSP00000032388 TRANSLATION protein_coding - CCDS20696.1 1 419.0 0.0 2.0 24.9 32.7 0.0 -4,-6 1.0 4 15.262 PRINCIPAL:1 ENSMUSG00000032899 Styk1 ENSMUST00000145390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032899 Styk1 ENSMUST00000049150 ENSMUSP00000044098 TRANSLATION protein_coding - CCDS20604.1 1 429.0 0.0 2.85 6.7 196.6 1.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000032899 Styk1 ENSMUST00000204371 - NO_TRANSLATION retained_intron ENSMUSG00000032899 Styk1 ENSMUST00000135859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032899 Styk1 ENSMUST00000121078 ENSMUSP00000112900 TRANSLATION protein_coding - - 1 340.0 0.0 2.65 0.0 176.9 1.0 -4,-7 0.0056 3 10.398 MINOR ENSMUSG00000094586 Vmn1r41 ENSMUST00000204949 ENSMUSP00000145199 TRANSLATION protein_coding - CCDS57438.1 2 311.0 0.0 0.0 0.1 452.3 6.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094586 Vmn1r41 ENSMUST00000227630 ENSMUSP00000153916 TRANSLATION protein_coding - - - 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000094586 Vmn1r41 ENSMUST00000226337 ENSMUSP00000153965 TRANSLATION protein_coding - - - 81.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000094586 Vmn1r41 ENSMUST00000226562 ENSMUSP00000154018 TRANSLATION protein_coding - - - 81.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000094586 Vmn1r41 ENSMUST00000228068 ENSMUSP00000154326 TRANSLATION protein_coding - CCDS57438.1 - 311.0 0.0 0.0 0.1 452.3 6.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094586 Vmn1r41 ENSMUST00000227039 ENSMUSP00000154038 TRANSLATION protein_coding - - - 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000038252 Ncapd2 ENSMUST00000191080 - NO_TRANSLATION retained_intron ENSMUSG00000038252 Ncapd2 ENSMUST00000043848 ENSMUSP00000042260 TRANSLATION protein_coding - CCDS39636.1 1 1392.0 0.0 1.4525 0.1 301.9 0.0 -4,-5 1.0 27 12.0 PRINCIPAL:1 ENSMUSG00000038252 Ncapd2 ENSMUST00000186210 - NO_TRANSLATION retained_intron ENSMUSG00000038252 Ncapd2 ENSMUST00000188665 - NO_TRANSLATION retained_intron ENSMUSG00000038252 Ncapd2 ENSMUST00000185624 - NO_TRANSLATION retained_intron ENSMUSG00000038252 Ncapd2 ENSMUST00000186561 - NO_TRANSLATION retained_intron ENSMUSG00000038252 Ncapd2 ENSMUST00000189959 ENSMUSP00000139445 TRANSLATION protein_coding stop - 3 162.0 0.0 0.0 0.0 34.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038252 Ncapd2 ENSMUST00000188306 - NO_TRANSLATION retained_intron ENSMUSG00000038252 Ncapd2 ENSMUST00000188119 - NO_TRANSLATION retained_intron ENSMUSG00000038252 Ncapd2 ENSMUST00000189706 - NO_TRANSLATION retained_intron ENSMUSG00000038252 Ncapd2 ENSMUST00000186667 - NO_TRANSLATION retained_intron ENSMUSG00000038252 Ncapd2 ENSMUST00000188410 - NO_TRANSLATION retained_intron ENSMUSG00000038252 Ncapd2 ENSMUST00000188762 ENSMUSP00000140672 TRANSLATION nonsense_mediated_decay - - 5 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002222 Rmnd5a ENSMUST00000140696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002222 Rmnd5a ENSMUST00000144081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002222 Rmnd5a ENSMUST00000123947 - NO_TRANSLATION retained_intron ENSMUSG00000002222 Rmnd5a ENSMUST00000149415 ENSMUSP00000115130 TRANSLATION protein_coding start - 1 218.0 4.0 4.75 0.0 116.4 0.0 -4,-5 0.0023 7 -2.0 MINOR ENSMUSG00000002222 Rmnd5a ENSMUST00000002292 ENSMUSP00000002292 TRANSLATION protein_coding - CCDS20231.1 1 391.0 4.0 8.75 32.8 133.8 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000003500 Impdh1 ENSMUST00000078155 ENSMUSP00000077289 TRANSLATION protein_coding - CCDS39449.1 1 514.0 40.0 14.08 19.7 516.1 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000003500 Impdh1 ENSMUST00000162242 ENSMUSP00000123981 TRANSLATION protein_coding start - 2 187.0 12.0 4.028 0.0 155.7 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000003500 Impdh1 ENSMUST00000159124 ENSMUSP00000124931 TRANSLATION protein_coding - CCDS39449.1 1 514.0 40.0 14.08 19.7 516.1 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000003500 Impdh1 ENSMUST00000162215 ENSMUSP00000125235 TRANSLATION protein_coding stop - 5 231.0 19.0 6.25 0.0 157.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000003500 Impdh1 ENSMUST00000160878 ENSMUSP00000124269 TRANSLATION protein_coding - - 5 489.0 40.0 13.33 1.0 469.4 0.0 -4,-5 0.0502 15 13.698 MINOR ENSMUSG00000003500 Impdh1 ENSMUST00000161654 - NO_TRANSLATION retained_intron ENSMUSG00000003500 Impdh1 ENSMUST00000160613 - NO_TRANSLATION retained_intron ENSMUSG00000003500 Impdh1 ENSMUST00000162099 ENSMUSP00000124541 TRANSLATION protein_coding - CCDS39449.1 1 514.0 40.0 14.08 19.7 516.1 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000003500 Impdh1 ENSMUST00000160749 ENSMUSP00000125488 TRANSLATION protein_coding stop - 5 84.0 2.0 2.5 0.0 70.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003500 Impdh1 ENSMUST00000162739 ENSMUSP00000125077 TRANSLATION protein_coding - - 5 538.0 40.0 13.08 3.2 505.5 0.0 -3,-4 0.1235 15 15.838 MINOR ENSMUSG00000002416 Ndufb2 ENSMUST00000119379 ENSMUSP00000114095 TRANSLATION protein_coding - CCDS20025.1 1 105.0 0.0 1.75 12.6 125.8 0.0 -4,0 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000002416 Ndufb2 ENSMUST00000135239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002416 Ndufb2 ENSMUST00000002490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002416 Ndufb2 ENSMUST00000135671 ENSMUSP00000118918 TRANSLATION protein_coding - CCDS20025.1 1 105.0 0.0 1.75 12.6 125.8 0.0 -4,0 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000002416 Ndufb2 ENSMUST00000128064 - NO_TRANSLATION retained_intron ENSMUSG00000002416 Ndufb2 ENSMUST00000146793 - NO_TRANSLATION retained_intron ENSMUSG00000108011 Gm44596 ENSMUST00000204223 ENSMUSP00000145012 TRANSLATION protein_coding,RT stop - 5 210.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.6046 - -2.0 PRINCIPAL:1 ENSMUSG00000054641 Mmrn1 ENSMUST00000204333 ENSMUSP00000145156 TRANSLATION protein_coding - CCDS85058.1 1 1209.0 7.0 1.08 0.1 147.7 0.0 2,-3 1.0 19 14.0 PRINCIPAL:4 ENSMUSG00000054641 Mmrn1 ENSMUST00000145763 - NO_TRANSLATION retained_intron ENSMUSG00000054641 Mmrn1 ENSMUST00000129603 ENSMUSP00000119609 TRANSLATION protein_coding - CCDS51799.1 1 1210.0 7.0 1.08 1.2 147.7 0.0 2,-3 0.9776 19 15.0 ALTERNATIVE:2 ENSMUSG00000029833 Trim24 ENSMUST00000031859 ENSMUSP00000031859 TRANSLATION protein_coding - CCDS20008.1 1 1051.0 20.0 8.1 3.1 145.5 0.0 -3,-4 1.0 17 15.0 PRINCIPAL:4 ENSMUSG00000029833 Trim24 ENSMUST00000120238 ENSMUSP00000114001 TRANSLATION protein_coding - CCDS71752.1 1 981.0 17.0 8.1 0.0 145.5 0.0 -4,-5 0.2385 16 12.002 MINOR ENSMUSG00000029833 Trim24 ENSMUST00000149561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029833 Trim24 ENSMUST00000149828 - NO_TRANSLATION retained_intron ENSMUSG00000029833 Trim24 ENSMUST00000153004 - NO_TRANSLATION retained_intron ENSMUSG00000029833 Trim24 ENSMUST00000120428 ENSMUSP00000113063 TRANSLATION protein_coding - CCDS71751.1 1 1017.0 20.0 8.1 3.1 145.5 0.0 -3,-4 0.8457 17 15.0 ALTERNATIVE:2 ENSMUSG00000029833 Trim24 ENSMUST00000135387 - NO_TRANSLATION retained_intron ENSMUSG00000029833 Trim24 ENSMUST00000123007 - NO_TRANSLATION retained_intron ENSMUSG00000018341 Il12rb2 ENSMUST00000117441 ENSMUSP00000113267 TRANSLATION protein_coding - CCDS80543.1 1 540.0 0.0 2.84 0.0 73.8 1.0 -4,-5 0.018 - 1.974 MINOR ENSMUSG00000018341 Il12rb2 ENSMUST00000018485 ENSMUSP00000010605 TRANSLATION protein_coding - CCDS20220.1 1 874.0 0.0 5.06 0.0 166.9 1.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000004347 Pde1c ENSMUST00000203372 ENSMUSP00000145508 TRANSLATION protein_coding - - 5 766.0 6.0 8.0 7.7 381.7 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:3 ENSMUSG00000004347 Pde1c ENSMUST00000164037 ENSMUSP00000130139 TRANSLATION protein_coding - CCDS51783.1 1 622.0 6.0 8.0 0.0 381.7 0.0 -4,-5 0.16 10 14.0 MINOR ENSMUSG00000004347 Pde1c ENSMUST00000164752 ENSMUSP00000129185 TRANSLATION protein_coding - CCDS51785.1 1 631.0 6.0 8.0 6.4 381.7 0.0 -4,-5 0.9468 10 15.612 ALTERNATIVE:1 ENSMUSG00000004347 Pde1c ENSMUST00000203462 ENSMUSP00000145419 TRANSLATION nonsense_mediated_decay start - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000004347 Pde1c ENSMUST00000044505 ENSMUSP00000046601 TRANSLATION protein_coding - CCDS51784.1 1 706.0 6.0 8.0 5.9 381.7 0.0 -4,-5 0.9493 10 15.462 ALTERNATIVE:1 ENSMUSG00000004347 Pde1c ENSMUST00000204821 - NO_TRANSLATION retained_intron ENSMUSG00000004347 Pde1c ENSMUST00000170774 ENSMUSP00000133170 TRANSLATION protein_coding - CCDS51786.1 1 617.0 6.0 8.0 0.0 381.7 0.0 -4,-6 0.1659 10 14.0 MINOR ENSMUSG00000004347 Pde1c ENSMUST00000239143 ENSMUSP00000158960 TRANSLATION protein_coding - - - 861.0 6.0 8.0 0.0 381.7 0.0 -4,-1 0.1463 12 14.0 MINOR ENSMUSG00000004347 Pde1c ENSMUST00000166102 ENSMUSP00000131350 TRANSLATION protein_coding - CCDS51785.1 1 631.0 6.0 8.0 6.4 381.7 0.0 -4,-5 0.9468 10 15.612 ALTERNATIVE:1 ENSMUSG00000004347 Pde1c ENSMUST00000203967 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004347 Pde1c ENSMUST00000203689 - NO_TRANSLATION retained_intron ENSMUSG00000004347 Pde1c ENSMUST00000166890 ENSMUSP00000131892 TRANSLATION protein_coding - CCDS51787.1 1 603.0 6.0 8.0 0.0 381.7 0.0 -4,-7 0.1806 10 14.0 MINOR ENSMUSG00000004347 Pde1c ENSMUST00000203492 - NO_TRANSLATION retained_intron ENSMUSG00000004347 Pde1c ENSMUST00000114327 ENSMUSP00000109966 TRANSLATION protein_coding - CCDS20170.1 1 654.0 6.0 8.0 3.4 381.7 0.0 -4,-5 0.6542 10 14.716 MINOR ENSMUSG00000004347 Pde1c ENSMUST00000168944 ENSMUSP00000128364 TRANSLATION protein_coding - CCDS20170.1 1 654.0 6.0 8.0 3.4 381.7 0.0 -4,-5 0.6542 10 14.716 MINOR ENSMUSG00000030068 Gm20696 ENSMUST00000176148 - NO_TRANSLATION retained_intron ENSMUSG00000030068 Gm20696 ENSMUST00000155466 ENSMUSP00000135058 TRANSLATION nonsense_mediated_decay,RT - - 2 74.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.6636 - -2.0 PRINCIPAL:1 ENSMUSG00000030068 Gm20696 ENSMUST00000176255 - NO_TRANSLATION retained_intron ENSMUSG00000030088 Aldh1l1 ENSMUST00000137669 - NO_TRANSLATION retained_intron ENSMUSG00000030088 Aldh1l1 ENSMUST00000204796 ENSMUSP00000145380 TRANSLATION nonsense_mediated_decay - - 5 359.0 2.0 8.58 0.0 244.3 0.0 -4,-5 0.0 25 -2.0 MINOR ENSMUSG00000030088 Aldh1l1 ENSMUST00000130418 ENSMUSP00000114304 TRANSLATION protein_coding - CCDS20361.1 1 902.0 28.0 19.83 25.6 822.8 0.0 -4,-5 1.0 54 22.0 PRINCIPAL:1 ENSMUSG00000030088 Aldh1l1 ENSMUST00000032175 ENSMUSP00000032175 TRANSLATION protein_coding - CCDS20361.1 1 902.0 28.0 19.83 25.6 822.8 0.0 -4,-5 1.0 54 22.0 PRINCIPAL:1 ENSMUSG00000030088 Aldh1l1 ENSMUST00000152436 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030088 Aldh1l1 ENSMUST00000203111 ENSMUSP00000145233 TRANSLATION protein_coding stop - 5 135.0 2.0 2.5 0.0 143.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000030088 Aldh1l1 ENSMUST00000127199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038871 Bpgm ENSMUST00000139067 ENSMUSP00000120794 TRANSLATION protein_coding stop - 3 132.0 11.0 1.5 0.0 0.0 0.0 -4,-6 0.0066 5 -2.0 MINOR ENSMUSG00000038871 Bpgm ENSMUST00000045372 ENSMUSP00000047393 TRANSLATION protein_coding - CCDS19994.1 1 259.0 14.0 4.75 36.9 0.0 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000038871 Bpgm ENSMUST00000149131 ENSMUSP00000121818 TRANSLATION protein_coding stop - 3 166.0 11.0 2.75 0.0 0.0 0.0 -4,-6 0.0054 9 -2.0 MINOR ENSMUSG00000038871 Bpgm ENSMUST00000135743 - NO_TRANSLATION retained_intron ENSMUSG00000038871 Bpgm ENSMUST00000138668 ENSMUSP00000115825 TRANSLATION protein_coding stop - 3 112.0 9.0 1.0 0.0 0.0 0.0 -4,-6 0.0056 3 -2.0 MINOR ENSMUSG00000107789 Gm44965 ENSMUST00000204121 ENSMUSP00000145212 TRANSLATION nonsense_mediated_decay,RT - - 3 59.0 6.0 0.0 0.0 0.0 0.0 -4,-5 0.5806 - -2.0 PRINCIPAL:1 ENSMUSG00000107789 Gm44965 ENSMUST00000204879 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068302 Noto ENSMUST00000174469 ENSMUSP00000134424 TRANSLATION protein_coding start - 2 135.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0006 - -2.0 MINOR ENSMUSG00000068302 Noto ENSMUST00000089578 ENSMUSP00000087006 TRANSLATION protein_coding - CCDS20293.1 1 240.0 0.0 2.0 0.1 70.5 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035125 Gcfc2 ENSMUST00000147673 - NO_TRANSLATION retained_intron ENSMUSG00000035125 Gcfc2 ENSMUST00000129678 - NO_TRANSLATION retained_intron ENSMUSG00000035125 Gcfc2 ENSMUST00000132301 - NO_TRANSLATION retained_intron ENSMUSG00000035125 Gcfc2 ENSMUST00000043195 ENSMUSP00000035644 TRANSLATION protein_coding - CCDS20260.1 1 769.0 0.0 0.0 0.1 105.2 0.0 -4,-7 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000035125 Gcfc2 ENSMUST00000152996 ENSMUSP00000138136 TRANSLATION nonsense_mediated_decay - - 1 263.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0014 1 -2.0 MINOR ENSMUSG00000035125 Gcfc2 ENSMUST00000127949 - NO_TRANSLATION retained_intron ENSMUSG00000035125 Gcfc2 ENSMUST00000204691 - NO_TRANSLATION retained_intron ENSMUSG00000035125 Gcfc2 ENSMUST00000203959 ENSMUSP00000144868 TRANSLATION protein_coding start - 3 175.0 0.0 0.0 0.0 65.1 0.0 -4,-5 0.0006 1 -2.0 MINOR ENSMUSG00000030276 Ttll3 ENSMUST00000032414 ENSMUSP00000032414 TRANSLATION protein_coding - CCDS39593.2 1 927.0 23.0 1.23 0.3 276.9 0.0 -2,-5 1.0 - 10.614 PRINCIPAL:4 ENSMUSG00000030276 Ttll3 ENSMUST00000203880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030276 Ttll3 ENSMUST00000204026 ENSMUSP00000145049 TRANSLATION protein_coding - CCDS85118.1 1 287.0 0.0 1.6 0.0 0.0 0.0 -4,-7 0.2242 - 6.0 MINOR ENSMUSG00000030276 Ttll3 ENSMUST00000204683 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030276 Ttll3 ENSMUST00000038889 ENSMUSP00000037870 TRANSLATION protein_coding - - 5 928.0 23.0 1.23 0.3 276.9 0.0 -2,-5 0.759 - 10.614 ALTERNATIVE:2 ENSMUSG00000030276 Ttll3 ENSMUST00000203925 - NO_TRANSLATION retained_intron ENSMUSG00000030276 Ttll3 ENSMUST00000203524 ENSMUSP00000145329 TRANSLATION protein_coding start - 5 721.0 23.0 1.428 0.0 276.9 0.0 -4,-7 0.1163 - -2.0 MINOR ENSMUSG00000030276 Ttll3 ENSMUST00000204255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030276 Ttll3 ENSMUST00000205017 ENSMUSP00000145044 TRANSLATION nonsense_mediated_decay start - 1 68.0 0.0 0.93 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030173 Klra5 ENSMUST00000118060 ENSMUSP00000112795 TRANSLATION protein_coding - CCDS20596.1 5 266.0 3.0 5.2 0.1 240.9 1.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030173 Klra5 ENSMUST00000014683 ENSMUSP00000014683 TRANSLATION protein_coding - CCDS20596.1 1 266.0 3.0 5.2 0.1 240.9 1.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030173 Klra5 ENSMUST00000169901 ENSMUSP00000126290 TRANSLATION protein_coding - - 1 176.0 3.0 4.0 0.1 150.7 0.0 -4,-5 0.0 - 7.188 MINOR ENSMUSG00000030173 Klra5 ENSMUST00000167079 - NO_TRANSLATION retained_intron ENSMUSG00000056091 St3gal5 ENSMUST00000114112 ENSMUSP00000109747 TRANSLATION protein_coding - CCDS39510.1 1 387.0 9.0 3.65 8.5 253.7 2.0 -4,-1 1.0 3 17.0 PRINCIPAL:4 ENSMUSG00000056091 St3gal5 ENSMUST00000188366 ENSMUSP00000145599 TRANSLATION protein_coding stop - 3 122.0 0.0 0.2 0.0 0.0 2.0 -4,-1 0.0024 2 -2.0 MINOR ENSMUSG00000056091 St3gal5 ENSMUST00000069994 ENSMUSP00000070414 TRANSLATION protein_coding - CCDS20237.1 1 414.0 9.0 3.65 8.5 253.7 2.0 -4,-2 0.9249 3 17.0 ALTERNATIVE:1 ENSMUSG00000056091 St3gal5 ENSMUST00000187007 ENSMUSP00000146063 TRANSLATION protein_coding start/stop - 3 222.0 4.0 1.55 0.0 106.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000042447 Mios ENSMUST00000040017 ENSMUSP00000039301 TRANSLATION protein_coding - CCDS39425.1 1 875.0 4.0 0.1 32.4 82.4 0.0 -4,-5 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000042447 Mios ENSMUST00000161134 - NO_TRANSLATION retained_intron ENSMUSG00000042447 Mios ENSMUST00000160265 - NO_TRANSLATION retained_intron ENSMUSG00000094993 Igkv4-51 ENSMUST00000103345 ENSMUSP00000100146 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.0 51.0 0.0 -1,-5 0.7882 1 -2.0 PRINCIPAL:1 ENSMUSG00000051896 Tex37 ENSMUST00000063456 ENSMUSP00000066786 TRANSLATION protein_coding - CCDS20224.1 1 180.0 0.0 0.5 9.6 344.0 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000029882 Prss3b ENSMUST00000031931 ENSMUSP00000031931 TRANSLATION protein_coding - CCDS20043.1 1 247.0 25.0 4.0 33.9 271.4 0.0 3,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000015112 Slc25a13 ENSMUST00000188414 ENSMUSP00000139571 TRANSLATION protein_coding - CCDS39421.1 1 676.0 4.0 12.03 19.7 248.6 0.0 -4,-6 1.0 22 20.0 PRINCIPAL:1 ENSMUSG00000015112 Slc25a13 ENSMUST00000015256 ENSMUSP00000015256 TRANSLATION protein_coding - CCDS39421.1 1 676.0 4.0 12.03 19.7 248.6 0.0 -4,-6 1.0 22 20.0 PRINCIPAL:1 ENSMUSG00000015112 Slc25a13 ENSMUST00000203551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015112 Slc25a13 ENSMUST00000203990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015112 Slc25a13 ENSMUST00000177698 - NO_TRANSLATION retained_intron ENSMUSG00000042607 Asb4 ENSMUST00000183358 ENSMUSP00000139245 TRANSLATION protein_coding - - 1 174.0 0.0 2.165 0.0 46.7 0.0 -4,-5 0.0 - 3.534 MINOR ENSMUSG00000042607 Asb4 ENSMUST00000043294 ENSMUSP00000040331 TRANSLATION protein_coding - CCDS19901.1 1 426.0 0.0 5.0 10.7 87.4 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000073111 Or2a12 ENSMUST00000216199 ENSMUSP00000150255 TRANSLATION protein_coding - CCDS20084.1 5 308.0 0.0 1.0 12.5 209.8 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073111 Or2a12 ENSMUST00000101461 ENSMUSP00000099005 TRANSLATION protein_coding - CCDS20084.1 - 308.0 0.0 1.0 12.5 209.8 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073111 Or2a12 ENSMUST00000215369 ENSMUSP00000149013 TRANSLATION protein_coding - CCDS20084.1 5 308.0 0.0 1.0 12.5 209.8 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073111 Or2a12 ENSMUST00000215686 ENSMUSP00000151143 TRANSLATION protein_coding - CCDS20084.1 5 308.0 0.0 1.0 12.5 209.8 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079523 Tmsb10 ENSMUST00000114049 ENSMUSP00000109683 TRANSLATION protein_coding - CCDS39519.1 1 44.0 0.0 1.33 33.9 82.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000079523 Tmsb10 ENSMUST00000114048 ENSMUSP00000109682 TRANSLATION protein_coding - CCDS39519.1 3 44.0 0.0 1.33 33.9 82.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000079523 Tmsb10 ENSMUST00000114050 ENSMUSP00000109684 TRANSLATION protein_coding - CCDS39519.1 1 44.0 0.0 1.33 33.9 82.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000079523 Tmsb10 ENSMUST00000144337 ENSMUSP00000145075 TRANSLATION protein_coding - - 2 67.0 0.0 1.0 0.0 65.0 0.0 -4,-5 0.0026 - 9.222 MINOR ENSMUSG00000030270 Cpne9 ENSMUST00000130191 ENSMUSP00000138786 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030270 Cpne9 ENSMUST00000136728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030270 Cpne9 ENSMUST00000132372 - NO_TRANSLATION retained_intron ENSMUSG00000030270 Cpne9 ENSMUST00000204050 - NO_TRANSLATION retained_intron ENSMUSG00000030270 Cpne9 ENSMUST00000041203 ENSMUSP00000044416 TRANSLATION protein_coding - CCDS20413.1 5 553.0 8.0 14.55 0.0 384.6 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000030270 Cpne9 ENSMUST00000128148 - NO_TRANSLATION retained_intron ENSMUSG00000030270 Cpne9 ENSMUST00000124574 - NO_TRANSLATION retained_intron ENSMUSG00000030270 Cpne9 ENSMUST00000155779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030270 Cpne9 ENSMUST00000138388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030270 Cpne9 ENSMUST00000134523 - NO_TRANSLATION retained_intron ENSMUSG00000094319 Igkv4-54 ENSMUST00000199437 ENSMUSP00000142893 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 50.9 0.0 0,-3 0.791 - -2.0 PRINCIPAL:1 ENSMUSG00000071893 Vmn1r4 ENSMUST00000204739 - NO_TRANSLATION retained_intron ENSMUSG00000071893 Vmn1r4 ENSMUST00000176838 ENSMUSP00000135323 TRANSLATION protein_coding - CCDS20172.1 1 297.0 0.0 0.0 0.1 191.1 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000071893 Vmn1r4 ENSMUST00000227073 ENSMUSP00000153919 TRANSLATION protein_coding - CCDS20172.1 - 297.0 0.0 0.0 0.1 191.1 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000071893 Vmn1r4 ENSMUST00000096612 ENSMUSP00000094369 TRANSLATION protein_coding - CCDS20172.1 - 297.0 0.0 0.0 0.1 191.1 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000029909 Prss37 ENSMUST00000148195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029909 Prss37 ENSMUST00000031967 ENSMUSP00000031967 TRANSLATION protein_coding - CCDS20033.1 1 237.0 2.0 2.64 0.0 88.3 0.0 0,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000081649 Or6d13 ENSMUST00000121958 ENSMUSP00000112931 TRANSLATION protein_coding - CCDS20455.1 - 327.0 0.0 1.0 0.8 152.8 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000081649 Or6d13 ENSMUST00000220008 ENSMUSP00000151916 TRANSLATION protein_coding - CCDS20455.1 5 327.0 0.0 1.0 0.8 152.8 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030127 Cops7a ENSMUST00000148485 ENSMUSP00000115348 TRANSLATION protein_coding stop - 3 79.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000030127 Cops7a ENSMUST00000112439 ENSMUSP00000108058 TRANSLATION protein_coding - CCDS51909.1 1 277.0 0.0 5.2 0.1 26.0 0.0 -4,-6 0.268 10 12.0 MINOR ENSMUSG00000030127 Cops7a ENSMUST00000149346 - NO_TRANSLATION retained_intron ENSMUSG00000030127 Cops7a ENSMUST00000129446 ENSMUSP00000114420 TRANSLATION protein_coding stop - 3 176.0 0.0 3.5 0.0 26.0 0.0 -4,-6 0.0889 6 -2.0 MINOR ENSMUSG00000030127 Cops7a ENSMUST00000135645 - NO_TRANSLATION retained_intron ENSMUSG00000030127 Cops7a ENSMUST00000032220 ENSMUSP00000032220 TRANSLATION protein_coding - CCDS20539.1 1 275.0 0.0 5.2 18.0 26.0 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000030127 Cops7a ENSMUST00000129976 ENSMUSP00000117584 TRANSLATION protein_coding stop - 5 226.0 0.0 5.0 0.0 26.0 0.0 -4,-6 0.0065 8 -2.0 MINOR ENSMUSG00000076576 Igkv6-32 ENSMUST00000103377 ENSMUSP00000100178 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.0 0.0 61.1 0.0 4,-1 0.8323 3 -2.0 PRINCIPAL:1 ENSMUSG00000090164 BC035044 ENSMUST00000178918 ENSMUSP00000137315 TRANSLATION protein_coding - - 2 102.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0323 - 0.0 ALTERNATIVE:2 ENSMUSG00000090164 BC035044 ENSMUST00000160290 ENSMUSP00000125357 TRANSLATION protein_coding - CCDS57450.1 1 138.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.8458 - 0.0 PRINCIPAL:2 ENSMUSG00000030187 Klra2 ENSMUST00000032306 ENSMUSP00000032306 TRANSLATION protein_coding - CCDS20603.1 1 288.0 4.0 3.7 0.0 224.7 1.0 -4,-6 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000030187 Klra2 ENSMUST00000088867 ENSMUSP00000086252 TRANSLATION protein_coding - CCDS51929.1 5 321.0 4.0 3.7 0.0 215.7 1.0 -4,-6 0.1645 - 11.0 ALTERNATIVE:2 ENSMUSG00000079304 Tex52 ENSMUST00000100926 ENSMUSP00000098486 TRANSLATION protein_coding - CCDS51916.1 1 308.0 0.0 0.4 0.1 513.0 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079304 Tex52 ENSMUST00000130785 ENSMUSP00000145112 TRANSLATION protein_coding - - 1 230.0 0.0 0.4 0.0 347.9 0.0 -4,-1 0.0422 - 6.0 MINOR ENSMUSG00000068327 Tlx2 ENSMUST00000089641 ENSMUSP00000087069 TRANSLATION protein_coding - CCDS20269.1 1 284.0 0.0 1.6 9.2 69.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068327 Tlx2 ENSMUST00000174674 ENSMUSP00000133420 TRANSLATION protein_coding - - 1 213.0 0.0 1.0 0.1 69.3 0.0 -4,-5 0.0315 - 9.726 MINOR ENSMUSG00000007655 Cav1 ENSMUST00000115455 ENSMUSP00000111115 TRANSLATION protein_coding stop - 3 115.0 0.0 2.25 0.0 130.2 2.0 -4,-5 0.0017 5 -2.0 MINOR ENSMUSG00000007655 Cav1 ENSMUST00000115454 ENSMUSP00000111114 TRANSLATION protein_coding - CCDS57410.1 2 147.0 0.0 3.25 31.7 203.1 2.0 -4,-5 1.0 6 12.0 ALTERNATIVE:1 ENSMUSG00000007655 Cav1 ENSMUST00000177234 ENSMUSP00000135875 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007655 Cav1 ENSMUST00000007799 ENSMUSP00000007799 TRANSLATION protein_coding - CCDS19924.1 1 178.0 0.0 3.25 29.8 203.1 2.0 -4,-5 0.9126 9 11.752 PRINCIPAL:3 ENSMUSG00000007655 Cav1 ENSMUST00000133065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007655 Cav1 ENSMUST00000115456 ENSMUSP00000111116 TRANSLATION protein_coding - CCDS19924.1 2 178.0 0.0 3.25 29.8 203.1 2.0 -4,-5 0.9126 9 11.752 PRINCIPAL:3 ENSMUSG00000007655 Cav1 ENSMUST00000123439 ENSMUSP00000120252 TRANSLATION protein_coding stop - 3 47.0 0.0 1.25 0.0 41.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000007655 Cav1 ENSMUST00000115453 ENSMUSP00000111113 TRANSLATION protein_coding - CCDS57410.1 1 147.0 0.0 3.25 31.7 203.1 2.0 -4,-5 1.0 6 12.0 ALTERNATIVE:1 ENSMUSG00000007655 Cav1 ENSMUST00000130505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007655 Cav1 ENSMUST00000150901 ENSMUSP00000135374 TRANSLATION protein_coding - - 2 93.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 4 1.002 MINOR ENSMUSG00000001521 Tulp3 ENSMUST00000133134 ENSMUSP00000145180 TRANSLATION protein_coding stop - 2 76.0 0.0 0.0 0.0 69.6 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000001521 Tulp3 ENSMUST00000128708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001521 Tulp3 ENSMUST00000203625 - NO_TRANSLATION retained_intron ENSMUSG00000001521 Tulp3 ENSMUST00000138313 - NO_TRANSLATION retained_intron ENSMUSG00000001521 Tulp3 ENSMUST00000001562 ENSMUSP00000001562 TRANSLATION protein_coding - CCDS39647.1 1 460.0 5.0 5.8 8.4 426.5 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000001521 Tulp3 ENSMUST00000157005 ENSMUSP00000145361 TRANSLATION protein_coding - - 1 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000029883 Prss59 ENSMUST00000122181 ENSMUSP00000112987 TRANSLATION protein_coding - CCDS20041.1 1 251.0 2.0 4.5 3.2 109.0 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029883 Prss59 ENSMUST00000031935 ENSMUSP00000031935 TRANSLATION protein_coding - CCDS20041.1 1 251.0 2.0 4.5 3.2 109.0 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029883 Prss59 ENSMUST00000136499 ENSMUSP00000116538 TRANSLATION protein_coding stop - 5 176.0 2.0 2.75 0.0 75.0 0.0 3,-2 0.0014 - -2.0 MINOR ENSMUSG00000041372 B4galnt3 ENSMUST00000057283 ENSMUSP00000058253 TRANSLATION protein_coding - CCDS20480.1 1 986.0 3.0 0.0 0.4 182.0 0.0 0,-6 1.0 4 5.0 PRINCIPAL:2 ENSMUSG00000041372 B4galnt3 ENSMUST00000125341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041372 B4galnt3 ENSMUST00000212457 ENSMUSP00000148759 TRANSLATION protein_coding - - 5 985.0 3.0 0.0 0.4 182.0 0.0 0,-6 0.7136 4 5.0 ALTERNATIVE:2 ENSMUSG00000052738 Suclg1 ENSMUST00000064740 ENSMUSP00000065113 TRANSLATION protein_coding - CCDS20246.2 1 346.0 23.0 7.58 3.0 195.9 0.0 -1,2 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000052738 Suclg1 ENSMUST00000173409 - NO_TRANSLATION retained_intron ENSMUSG00000052738 Suclg1 ENSMUST00000123159 ENSMUSP00000134171 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.0 0.0 0.0 0.0 -1,1 0.0004 - -2.0 MINOR ENSMUSG00000052738 Suclg1 ENSMUST00000173366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052738 Suclg1 ENSMUST00000203632 ENSMUSP00000145246 TRANSLATION protein_coding start - 2 126.0 4.0 1.0 0.0 0.0 0.0 -1,2 0.0 1 -2.0 MINOR ENSMUSG00000052738 Suclg1 ENSMUST00000127660 - NO_TRANSLATION retained_intron ENSMUSG00000076514 Igkv17-121 ENSMUST00000103315 ENSMUSP00000100116 TRANSLATION IG_V_gene stop - - 116.0 0.0 1.3 0.0 42.0 0.0 3,-2 0.3162 - -2.0 ALTERNATIVE:2 ENSMUSG00000076514 Igkv17-121 ENSMUST00000197515 ENSMUSP00000143096 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.1 0.0 42.0 0.0 4,-1 0.6972 - -2.0 PRINCIPAL:5 ENSMUSG00000053977 Cd8a ENSMUST00000205054 - NO_TRANSLATION retained_intron ENSMUSG00000053977 Cd8a ENSMUST00000066747 ENSMUSP00000068123 TRANSLATION protein_coding - CCDS39507.1 1 247.0 0.0 1.2 0.0 56.9 1.0 -1,-4 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000053977 Cd8a ENSMUST00000172321 ENSMUSP00000131873 TRANSLATION protein_coding - CCDS51806.1 1 222.0 0.0 1.2 0.0 56.9 1.0 -1,-4 0.3413 1 8.0 ALTERNATIVE:2 ENSMUSG00000039159 Ube2h ENSMUST00000102993 ENSMUSP00000100058 TRANSLATION protein_coding - CCDS19969.1 1 183.0 0.0 4.8 31.4 128.4 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000039159 Ube2h ENSMUST00000094543 ENSMUSP00000092121 TRANSLATION protein_coding - CCDS51743.1 1 152.0 0.0 3.8 8.4 41.6 0.0 -4,-6 0.1728 3 5.766 MINOR ENSMUSG00000039159 Ube2h ENSMUST00000128141 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039159 Ube2h ENSMUST00000148744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061758 Akr1b10 ENSMUST00000144384 - NO_TRANSLATION retained_intron ENSMUSG00000061758 Akr1b10 ENSMUST00000115051 ENSMUSP00000110703 TRANSLATION protein_coding - - 5 288.0 28.0 8.41 0.0 164.9 0.0 -4,-7 0.0014 3 12.366 MINOR ENSMUSG00000061758 Akr1b10 ENSMUST00000182055 - NO_TRANSLATION retained_intron ENSMUSG00000061758 Akr1b10 ENSMUST00000139156 ENSMUSP00000138639 TRANSLATION nonsense_mediated_decay - - 1 145.0 9.0 3.35 0.0 81.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000061758 Akr1b10 ENSMUST00000038383 ENSMUSP00000039114 TRANSLATION protein_coding - CCDS19992.1 1 316.0 31.0 9.16 34.7 200.5 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000061758 Akr1b10 ENSMUST00000144072 - NO_TRANSLATION retained_intron ENSMUSG00000045514 Or9a4 ENSMUST00000051540 ENSMUSP00000054887 TRANSLATION protein_coding - CCDS20035.1 - 314.0 0.0 1.0 10.9 149.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045514 Or9a4 ENSMUST00000216942 ENSMUSP00000151187 TRANSLATION protein_coding - CCDS20035.1 5 314.0 0.0 1.0 10.9 149.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030194 Tas2r116 ENSMUST00000032315 ENSMUSP00000032315 TRANSLATION protein_coding - CCDS20625.1 - 305.0 0.0 0.0 0.0 292.8 0.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000049553 Polr1a ENSMUST00000205942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049553 Polr1a ENSMUST00000206556 ENSMUSP00000146166 TRANSLATION nonsense_mediated_decay - - 1 282.0 4.0 2.963 0.0 69.3 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000049553 Polr1a ENSMUST00000206823 - NO_TRANSLATION retained_intron ENSMUSG00000049553 Polr1a ENSMUST00000206753 - NO_TRANSLATION retained_intron ENSMUSG00000049553 Polr1a ENSMUST00000055296 ENSMUSP00000060858 TRANSLATION protein_coding - CCDS20236.1 1 1717.0 7.0 17.663 1.1 864.9 0.0 -4,-2 1.0 20 19.0 PRINCIPAL:1 ENSMUSG00000049553 Polr1a ENSMUST00000205517 ENSMUSP00000146050 TRANSLATION nonsense_mediated_decay start - 1 743.0 0.0 6.24 0.0 324.6 0.0 -4,-6 0.0046 7 -2.0 MINOR ENSMUSG00000049553 Polr1a ENSMUST00000205842 - NO_TRANSLATION retained_intron ENSMUSG00000049553 Polr1a ENSMUST00000205333 - NO_TRANSLATION retained_intron ENSMUSG00000049553 Polr1a ENSMUST00000206982 - NO_TRANSLATION retained_intron ENSMUSG00000049553 Polr1a ENSMUST00000206513 ENSMUSP00000145553 TRANSLATION nonsense_mediated_decay start - 2 48.0 0.0 0.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079560 Hoxa3 ENSMUST00000114434 ENSMUSP00000110077 TRANSLATION protein_coding - CCDS20140.1 1 443.0 0.0 0.4 11.0 174.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079560 Hoxa3 ENSMUST00000134831 ENSMUSP00000114711 TRANSLATION protein_coding stop - 3 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079560 Hoxa3 ENSMUST00000148446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079560 Hoxa3 ENSMUST00000142764 - NO_TRANSLATION retained_intron ENSMUSG00000030017 Reg3g ENSMUST00000176650 - NO_TRANSLATION retained_intron ENSMUSG00000030017 Reg3g ENSMUST00000032089 ENSMUSP00000032089 TRANSLATION protein_coding - CCDS20258.1 1 174.0 3.0 4.125 9.4 78.4 0.0 4,-1 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000030098 Grip2 ENSMUST00000162293 ENSMUSP00000124717 TRANSLATION nonsense_mediated_decay - - 5 821.0 0.0 13.11 0.0 257.4 0.0 -4,-5 0.0285 7 -2.0 MINOR ENSMUSG00000030098 Grip2 ENSMUST00000162300 ENSMUSP00000124709 TRANSLATION protein_coding - CCDS51852.1 5 1042.0 0.0 15.44 4.2 257.4 0.0 -4,-2 1.0 10 10.0 PRINCIPAL:2 ENSMUSG00000030098 Grip2 ENSMUST00000205964 - NO_TRANSLATION retained_intron ENSMUSG00000030098 Grip2 ENSMUST00000159684 ENSMUSP00000125047 TRANSLATION protein_coding - - 5 1001.0 0.0 15.44 3.3 257.4 0.0 -4,-2 0.6663 9 9.438 ALTERNATIVE:2 ENSMUSG00000030098 Grip2 ENSMUST00000161566 ENSMUSP00000123941 TRANSLATION nonsense_mediated_decay - - 5 174.0 0.0 2.48 0.0 51.1 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000030098 Grip2 ENSMUST00000161545 ENSMUSP00000125538 TRANSLATION nonsense_mediated_decay start - 3 119.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000008153 Clstn3 ENSMUST00000143283 - NO_TRANSLATION retained_intron ENSMUSG00000008153 Clstn3 ENSMUST00000008297 ENSMUSP00000008297 TRANSLATION protein_coding - CCDS20519.1 1 956.0 13.0 1.845 0.0 29.5 1.0 4,-1 0.8187 12 14.0 ALTERNATIVE:2 ENSMUSG00000008153 Clstn3 ENSMUST00000147947 - NO_TRANSLATION retained_intron ENSMUSG00000008153 Clstn3 ENSMUST00000112523 ENSMUSP00000108142 TRANSLATION protein_coding - CCDS85156.1 1 919.0 12.0 1.595 3.8 29.5 1.0 -4,-5 1.0 12 13.518 PRINCIPAL:4 ENSMUSG00000008153 Clstn3 ENSMUST00000239139 ENSMUSP00000159191 TRANSLATION nonsense_mediated_decay - - - 78.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000008153 Clstn3 ENSMUST00000150774 ENSMUSP00000145422 TRANSLATION protein_coding stop - 5 64.0 3.0 0.225 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000008153 Clstn3 ENSMUST00000124998 ENSMUSP00000158892 TRANSLATION protein_coding - - 2 191.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0003 - 0.0 MINOR ENSMUSG00000008153 Clstn3 ENSMUST00000238807 ENSMUSP00000158920 TRANSLATION protein_coding - - - 357.0 0.0 0.0 0.0 0.0 2.0 -1,-5 0.0076 2 0.0 MINOR ENSMUSG00000008153 Clstn3 ENSMUST00000156040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002588 Pon1 ENSMUST00000002663 ENSMUSP00000002663 TRANSLATION protein_coding - CCDS19898.1 1 355.0 5.0 8.75 16.3 132.2 0.0 3,-4 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000002588 Pon1 ENSMUST00000176933 - NO_TRANSLATION retained_intron ENSMUSG00000002588 Pon1 ENSMUST00000176945 ENSMUSP00000135728 TRANSLATION protein_coding - - 5 181.0 3.0 4.0 0.0 0.0 0.0 3,-4 0.0007 2 3.0 MINOR ENSMUSG00000002588 Pon1 ENSMUST00000177159 ENSMUSP00000135195 TRANSLATION protein_coding stop - 5 256.0 4.0 6.75 0.0 21.8 0.0 3,-4 0.0009 5 -2.0 MINOR ENSMUSG00000030134 Rasgef1a ENSMUST00000164960 ENSMUSP00000132244 TRANSLATION protein_coding - CCDS85141.1 5 481.0 0.0 3.395 10.2 214.3 0.0 -4,-6 1.0 4 10.604 PRINCIPAL:4 ENSMUSG00000030134 Rasgef1a ENSMUST00000203482 ENSMUSP00000145077 TRANSLATION protein_coding - CCDS51883.1 1 489.0 0.0 3.395 7.2 214.3 0.0 -4,-5 0.8852 4 9.626 ALTERNATIVE:1 ENSMUSG00000030134 Rasgef1a ENSMUST00000203804 ENSMUSP00000145214 TRANSLATION protein_coding - - 1 498.0 0.0 3.593 2.8 214.3 0.0 -4,-5 0.3188 4 8.588 MINOR ENSMUSG00000095577 Gm6619 ENSMUST00000159229 ENSMUSP00000123949 TRANSLATION protein_coding - CCDS85173.1 1 175.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.9478 - 0.0 PRINCIPAL:1 ENSMUSG00000056203 Tas2r135 ENSMUST00000070178 ENSMUSP00000070247 TRANSLATION protein_coding - CCDS20069.1 - 321.0 0.0 0.0 0.4 207.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061353 Cxcl12 ENSMUST00000073043 ENSMUSP00000072800 TRANSLATION protein_coding - CCDS20463.1 1 119.0 0.0 2.75 0.0 33.6 0.0 4,-1 0.2323 1 8.0 MINOR ENSMUSG00000061353 Cxcl12 ENSMUST00000112866 ENSMUSP00000108487 TRANSLATION protein_coding - CCDS39606.1 1 89.0 0.0 1.75 21.9 33.6 0.0 4,-1 0.9264 1 9.816 ALTERNATIVE:1 ENSMUSG00000061353 Cxcl12 ENSMUST00000134244 - NO_TRANSLATION retained_intron ENSMUSG00000061353 Cxcl12 ENSMUST00000112871 ENSMUSP00000108492 TRANSLATION protein_coding - CCDS39605.1 1 93.0 0.0 1.75 21.9 33.6 0.0 4,-1 1.0 1 9.816 PRINCIPAL:4 ENSMUSG00000033152 Podxl2 ENSMUST00000135843 - NO_TRANSLATION retained_intron ENSMUSG00000033152 Podxl2 ENSMUST00000145780 ENSMUSP00000120460 TRANSLATION protein_coding stop - 3 150.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033152 Podxl2 ENSMUST00000141348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033152 Podxl2 ENSMUST00000038409 ENSMUSP00000040417 TRANSLATION protein_coding - CCDS20340.1 1 539.0 0.0 0.0 0.0 245.1 2.0 -4,-5 1.0 5 2.0 PRINCIPAL:2 ENSMUSG00000033152 Podxl2 ENSMUST00000124562 - NO_TRANSLATION retained_intron ENSMUSG00000033152 Podxl2 ENSMUST00000142266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033152 Podxl2 ENSMUST00000140455 ENSMUSP00000120870 TRANSLATION protein_coding stop - 3 150.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033152 Podxl2 ENSMUST00000145944 ENSMUSP00000117954 TRANSLATION protein_coding - CCDS85093.1 5 603.0 0.0 0.0 0.1 245.1 2.0 2,-2 0.4042 5 2.0 ALTERNATIVE:2 ENSMUSG00000033152 Podxl2 ENSMUST00000205158 - NO_TRANSLATION retained_intron ENSMUSG00000033152 Podxl2 ENSMUST00000153852 - NO_TRANSLATION retained_intron ENSMUSG00000033152 Podxl2 ENSMUST00000061262 ENSMUSP00000058985 TRANSLATION protein_coding - CCDS20340.1 1 539.0 0.0 0.0 0.0 245.1 2.0 -4,-5 1.0 5 2.0 PRINCIPAL:2 ENSMUSG00000033152 Podxl2 ENSMUST00000141401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057604 Lmcd1 ENSMUST00000032376 ENSMUSP00000032376 TRANSLATION protein_coding - CCDS20403.1 1 365.0 13.0 1.88 9.9 205.0 0.0 -4,-5 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000079853 Klra1 ENSMUST00000032288 ENSMUSP00000032288 TRANSLATION protein_coding - CCDS20602.1 1 262.0 3.0 4.2 0.1 226.5 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079853 Klra1 ENSMUST00000127570 - NO_TRANSLATION retained_intron ENSMUSG00000030117 Gdf3 ENSMUST00000032211 ENSMUSP00000032211 TRANSLATION protein_coding - CCDS20499.1 1 366.0 0.0 0.25 3.1 136.0 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030117 Gdf3 ENSMUST00000204882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095670 Vmn1r30 ENSMUST00000226334 ENSMUSP00000153952 TRANSLATION protein_coding - CCDS51797.1 - 302.0 0.0 0.0 0.4 175.0 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095670 Vmn1r30 ENSMUST00000228577 ENSMUSP00000153898 TRANSLATION protein_coding - CCDS51797.1 - 302.0 0.0 0.0 0.4 175.0 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095670 Vmn1r30 ENSMUST00000228635 ENSMUSP00000154098 TRANSLATION protein_coding - CCDS51797.1 - 302.0 0.0 0.0 0.4 175.0 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095670 Vmn1r30 ENSMUST00000227466 ENSMUSP00000154766 TRANSLATION protein_coding - CCDS51797.1 - 302.0 0.0 0.0 0.4 175.0 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095670 Vmn1r30 ENSMUST00000078890 ENSMUSP00000087336 TRANSLATION protein_coding - CCDS51797.1 - 302.0 0.0 0.0 0.4 175.0 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000001156 Mxd1 ENSMUST00000203946 ENSMUSP00000145081 TRANSLATION protein_coding start - 5 121.0 0.0 2.33 0.0 43.4 0.0 -4,-6 0.0014 - -2.0 MINOR ENSMUSG00000001156 Mxd1 ENSMUST00000205076 - NO_TRANSLATION retained_intron ENSMUSG00000001156 Mxd1 ENSMUST00000204437 ENSMUSP00000145396 TRANSLATION nonsense_mediated_decay - - 3 75.0 0.0 1.08 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000001156 Mxd1 ENSMUST00000001184 ENSMUSP00000001184 TRANSLATION protein_coding - CCDS51835.1 1 227.0 0.0 3.08 0.4 43.4 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000033182 Kbtbd12 ENSMUST00000184878 ENSMUSP00000139333 TRANSLATION protein_coding - - 5 202.0 0.0 1.16 0.0 61.2 0.0 -4,-5 0.0 - 2.502 MINOR ENSMUSG00000033182 Kbtbd12 ENSMUST00000184664 ENSMUSP00000139069 TRANSLATION protein_coding stop - 3 76.0 0.0 0.6 0.0 47.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033182 Kbtbd12 ENSMUST00000184743 - NO_TRANSLATION retained_intron ENSMUSG00000033182 Kbtbd12 ENSMUST00000120933 ENSMUSP00000112581 TRANSLATION protein_coding - CCDS51842.2 5 625.0 0.0 2.785 9.0 307.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033182 Kbtbd12 ENSMUST00000203223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033182 Kbtbd12 ENSMUST00000184591 - NO_TRANSLATION retained_intron ENSMUSG00000033182 Kbtbd12 ENSMUST00000038804 - NO_TRANSLATION retained_intron ENSMUSG00000076606 Igkj3 ENSMUST00000199487 ENSMUSP00000143592 TRANSLATION IG_J_gene start/stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000076606 Igkj3 ENSMUST00000103407 - NO_TRANSLATION processed_transcript ENSMUSG00000076543 Igkv4-74 ENSMUST00000103344 ENSMUSP00000100145 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.0 0.0 62.9 0.0 0,-3 0.7904 - -2.0 PRINCIPAL:1 ENSMUSG00000039215 Aoc1l3 ENSMUST00000037696 ENSMUSP00000045221 TRANSLATION protein_coding - CCDS20121.1 1 820.0 15.0 3.332 0.0 426.8 0.0 3,-3 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000033706 Smyd5 ENSMUST00000204615 - NO_TRANSLATION retained_intron ENSMUSG00000033706 Smyd5 ENSMUST00000156322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033706 Smyd5 ENSMUST00000204428 - NO_TRANSLATION retained_intron ENSMUSG00000033706 Smyd5 ENSMUST00000152218 - NO_TRANSLATION retained_intron ENSMUSG00000033706 Smyd5 ENSMUST00000045693 ENSMUSP00000048537 TRANSLATION protein_coding - CCDS51827.1 1 416.0 13.0 10.58 24.3 36.9 0.0 -3,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000033706 Smyd5 ENSMUST00000153749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033706 Smyd5 ENSMUST00000130928 - NO_TRANSLATION retained_intron ENSMUSG00000033706 Smyd5 ENSMUST00000134405 - NO_TRANSLATION retained_intron ENSMUSG00000071477 Zfp777 ENSMUST00000114583 ENSMUSP00000110230 TRANSLATION protein_coding - CCDS39477.1 5 885.0 36.0 2.9 0.0 274.3 0.0 -4,-2 0.4603 2 14.0 ALTERNATIVE:2 ENSMUSG00000071477 Zfp777 ENSMUST00000095944 ENSMUSP00000093637 TRANSLATION protein_coding - CCDS85035.1 1 841.0 36.0 2.9 1.1 274.3 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:2 ENSMUSG00000071477 Zfp777 ENSMUST00000125385 ENSMUSP00000123597 TRANSLATION protein_coding stop - 2 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071477 Zfp777 ENSMUST00000148362 ENSMUSP00000116303 TRANSLATION protein_coding start - 3 227.0 0.0 2.3 0.0 109.3 0.0 -4,-5 0.0053 2 -2.0 MINOR ENSMUSG00000071477 Zfp777 ENSMUST00000147281 ENSMUSP00000117227 TRANSLATION protein_coding stop - 2 174.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051695 Pcbp1 ENSMUST00000053015 ENSMUSP00000054863 TRANSLATION protein_coding - CCDS20314.1 - 356.0 0.0 0.8 9.8 181.5 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000029682 Spam1 ENSMUST00000202786 - NO_TRANSLATION retained_intron ENSMUSG00000029682 Spam1 ENSMUST00000202331 ENSMUSP00000143944 TRANSLATION protein_coding - CCDS19947.1 1 512.0 0.0 2.8 0.4 444.9 0.0 -2,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000029682 Spam1 ENSMUST00000202569 ENSMUSP00000143970 TRANSLATION protein_coding - CCDS19947.1 1 512.0 0.0 2.8 0.4 444.9 0.0 -2,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000029682 Spam1 ENSMUST00000031693 ENSMUSP00000031693 TRANSLATION protein_coding - CCDS19947.1 1 512.0 0.0 2.8 0.4 444.9 0.0 -2,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000053389 Tas2r107 ENSMUST00000065781 ENSMUSP00000067082 TRANSLATION protein_coding - CCDS20609.1 - 308.0 0.0 0.0 1.4 348.1 0.0 -1,-3 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000045962 Wnk1 ENSMUST00000162368 ENSMUSP00000125383 TRANSLATION protein_coding start/stop - 3 213.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000045962 Wnk1 ENSMUST00000161048 ENSMUSP00000125345 TRANSLATION protein_coding start/stop - 1 405.0 0.0 3.25 0.0 94.6 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000045962 Wnk1 ENSMUST00000035513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045962 Wnk1 ENSMUST00000162541 ENSMUSP00000125193 TRANSLATION protein_coding start/stop - 3 407.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0025 8 -2.0 MINOR ENSMUSG00000045962 Wnk1 ENSMUST00000160872 ENSMUSP00000123739 TRANSLATION protein_coding start/stop - 5 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045962 Wnk1 ENSMUST00000161243 ENSMUSP00000124050 TRANSLATION protein_coding start/stop - 5 281.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0015 3 -2.0 MINOR ENSMUSG00000045962 Wnk1 ENSMUST00000161512 ENSMUSP00000136086 TRANSLATION protein_coding - - - 433.0 0.0 0.0 0.0 0.0 0.0 1,-1 0.0045 4 0.0 MINOR ENSMUSG00000045962 Wnk1 ENSMUST00000060043 ENSMUSP00000063001 TRANSLATION protein_coding - CCDS20478.1 1 2377.0 0.0 8.4 0.1 280.1 0.0 -4,-5 1.0 22 8.0 PRINCIPAL:2 ENSMUSG00000045962 Wnk1 ENSMUST00000160686 ENSMUSP00000137334 TRANSLATION protein_coding start/stop - 3 238.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000045962 Wnk1 ENSMUST00000160769 - NO_TRANSLATION retained_intron ENSMUSG00000045962 Wnk1 ENSMUST00000160820 - NO_TRANSLATION retained_intron ENSMUSG00000045962 Wnk1 ENSMUST00000160493 ENSMUSP00000124377 TRANSLATION protein_coding start/stop - 2 200.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000045962 Wnk1 ENSMUST00000159397 - NO_TRANSLATION retained_intron ENSMUSG00000045962 Wnk1 ENSMUST00000203030 ENSMUSP00000145304 TRANSLATION protein_coding - CCDS85147.1 1 2128.0 0.0 8.4 0.1 280.1 0.0 -4,-5 0.5481 22 8.0 ALTERNATIVE:2 ENSMUSG00000045962 Wnk1 ENSMUST00000159903 - NO_TRANSLATION retained_intron ENSMUSG00000045962 Wnk1 ENSMUST00000204207 - NO_TRANSLATION retained_intron ENSMUSG00000045962 Wnk1 ENSMUST00000159151 - NO_TRANSLATION retained_intron ENSMUSG00000045962 Wnk1 ENSMUST00000203335 - NO_TRANSLATION retained_intron ENSMUSG00000045962 Wnk1 ENSMUST00000161185 - NO_TRANSLATION retained_intron ENSMUSG00000045962 Wnk1 ENSMUST00000088646 ENSMUSP00000086019 TRANSLATION protein_coding - CCDS51888.1 1 2195.0 0.0 8.4 0.1 280.1 0.0 -4,-5 0.5407 21 8.0 ALTERNATIVE:2 ENSMUSG00000045962 Wnk1 ENSMUST00000162190 ENSMUSP00000125686 TRANSLATION protein_coding start/stop - 5 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045962 Wnk1 ENSMUST00000177761 ENSMUSP00000136777 TRANSLATION protein_coding - CCDS57445.1 5 2626.0 0.0 8.4 0.1 280.1 0.0 -4,-5 0.5543 26 8.0 ALTERNATIVE:2 ENSMUSG00000045962 Wnk1 ENSMUST00000088644 ENSMUSP00000086017 TRANSLATION protein_coding - CCDS57444.1 5 2635.0 0.0 8.4 0.1 280.1 0.0 -4,-5 0.5574 26 8.0 ALTERNATIVE:2 ENSMUSG00000045962 Wnk1 ENSMUST00000161802 ENSMUSP00000124724 TRANSLATION nonsense_mediated_decay start - 3 85.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000045962 Wnk1 ENSMUST00000161392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045962 Wnk1 ENSMUST00000159785 ENSMUSP00000124905 TRANSLATION protein_coding start/stop - 3 252.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0009 - -2.0 MINOR ENSMUSG00000039264 Gimap3 ENSMUST00000204036 ENSMUSP00000145211 TRANSLATION protein_coding - CCDS20115.1 1 301.0 17.0 1.0 0.3 261.5 1.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039264 Gimap3 ENSMUST00000038811 ENSMUSP00000047435 TRANSLATION protein_coding - CCDS20115.1 2 301.0 17.0 1.0 0.3 261.5 1.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034930 Rtkn ENSMUST00000065512 ENSMUSP00000065571 TRANSLATION protein_coding - CCDS51817.1 1 564.0 0.0 0.0 8.3 153.2 0.0 -4,0 0.9472 8 2.739 ALTERNATIVE:1 ENSMUSG00000034930 Rtkn ENSMUST00000087938 ENSMUSP00000085249 TRANSLATION protein_coding - CCDS20274.1 1 551.0 0.0 0.0 9.0 153.2 0.0 -4,-5 1.0 8 3.0 PRINCIPAL:4 ENSMUSG00000034930 Rtkn ENSMUST00000133226 - NO_TRANSLATION retained_intron ENSMUSG00000034930 Rtkn ENSMUST00000130622 ENSMUSP00000122660 TRANSLATION protein_coding stop - 3 217.0 0.0 0.0 0.0 101.9 0.0 -4,-7 0.0001 4 -2.0 MINOR ENSMUSG00000034930 Rtkn ENSMUST00000213056 ENSMUSP00000148398 TRANSLATION protein_coding start - 3 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034930 Rtkn ENSMUST00000135490 ENSMUSP00000116964 TRANSLATION protein_coding stop - 5 233.0 0.0 0.0 0.0 153.2 0.0 -4,-6 0.0296 3 -2.0 MINOR ENSMUSG00000034930 Rtkn ENSMUST00000129316 ENSMUSP00000120640 TRANSLATION protein_coding stop - 3 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034930 Rtkn ENSMUST00000121093 ENSMUSP00000112501 TRANSLATION protein_coding - CCDS20274.1 1 551.0 0.0 0.0 9.0 153.2 0.0 -4,-5 1.0 8 3.0 PRINCIPAL:4 ENSMUSG00000034930 Rtkn ENSMUST00000203183 - NO_TRANSLATION retained_intron ENSMUSG00000068748 Ptprz1 ENSMUST00000200769 - NO_TRANSLATION retained_intron ENSMUSG00000068748 Ptprz1 ENSMUST00000202579 ENSMUSP00000144605 TRANSLATION protein_coding - - 1 1612.0 0.0 6.35 0.1 287.6 0.0 1,-2 0.0271 20 0.0 MINOR ENSMUSG00000068748 Ptprz1 ENSMUST00000202341 - NO_TRANSLATION retained_intron ENSMUSG00000068748 Ptprz1 ENSMUST00000201827 - NO_TRANSLATION retained_intron ENSMUSG00000068748 Ptprz1 ENSMUST00000090568 ENSMUSP00000088056 TRANSLATION protein_coding - CCDS39437.1 1 2312.0 11.0 18.814 0.4 771.2 0.0 1,-2 0.5732 33 18.0 MINOR ENSMUSG00000068748 Ptprz1 ENSMUST00000202102 ENSMUSP00000143902 TRANSLATION protein_coding - CCDS80493.1 1 1463.0 11.0 18.814 5.3 771.2 0.0 1,-2 1.0 28 20.0 PRINCIPAL:1 ENSMUSG00000064293 Cntn4 ENSMUST00000142626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064293 Cntn4 ENSMUST00000132044 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064293 Cntn4 ENSMUST00000113258 ENSMUSP00000108883 TRANSLATION protein_coding - - 1 498.0 0.0 10.0 0.0 247.4 0.0 3,-2 0.0016 9 0.0 MINOR ENSMUSG00000064293 Cntn4 ENSMUST00000113261 ENSMUSP00000108886 TRANSLATION protein_coding - CCDS20395.1 1 705.0 0.0 14.0 0.8 343.3 0.0 3,-2 0.1228 15 3.198 MINOR ENSMUSG00000064293 Cntn4 ENSMUST00000132395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064293 Cntn4 ENSMUST00000089208 ENSMUSP00000086616 TRANSLATION protein_coding - CCDS51866.1 5 1026.0 0.0 19.75 25.9 390.0 0.0 3,-2 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000064293 Cntn4 ENSMUST00000113260 ENSMUSP00000108885 TRANSLATION protein_coding - CCDS20395.1 1 705.0 0.0 14.0 0.8 343.3 0.0 3,-2 0.1228 15 3.198 MINOR ENSMUSG00000064293 Cntn4 ENSMUST00000204621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064293 Cntn4 ENSMUST00000123596 - NO_TRANSLATION retained_intron ENSMUSG00000064293 Cntn4 ENSMUST00000130040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064293 Cntn4 ENSMUST00000079416 ENSMUSP00000078385 TRANSLATION protein_coding - - 5 714.0 0.0 14.0 0.0 343.3 0.0 3,-2 0.0413 15 3.198 MINOR ENSMUSG00000064293 Cntn4 ENSMUST00000125904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064293 Cntn4 ENSMUST00000113264 ENSMUSP00000108889 TRANSLATION protein_coding - CCDS51866.1 5 1026.0 0.0 19.75 25.9 390.0 0.0 3,-2 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000054422 Fabp1 ENSMUST00000067492 ENSMUSP00000064655 TRANSLATION protein_coding - CCDS20226.1 1 127.0 0.0 3.25 33.2 104.5 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000029830 Svopl ENSMUST00000172585 ENSMUSP00000133326 TRANSLATION nonsense_mediated_decay start - 5 29.0 0.0 0.0 0.0 0.0 0.0 -1,-6 0.0 - -2.0 MINOR ENSMUSG00000029830 Svopl ENSMUST00000200796 - NO_TRANSLATION retained_intron ENSMUSG00000029830 Svopl ENSMUST00000173428 - NO_TRANSLATION retained_intron ENSMUSG00000029830 Svopl ENSMUST00000096040 ENSMUSP00000093743 TRANSLATION protein_coding - CCDS20009.2 1 494.0 0.0 5.092 14.9 68.2 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029830 Svopl ENSMUST00000040486 - NO_TRANSLATION retained_intron ENSMUSG00000030214 Plbd1 ENSMUST00000137139 - NO_TRANSLATION retained_intron ENSMUSG00000030214 Plbd1 ENSMUST00000133911 - NO_TRANSLATION retained_intron ENSMUSG00000030214 Plbd1 ENSMUST00000032336 ENSMUSP00000032336 TRANSLATION protein_coding - CCDS20652.1 1 550.0 0.0 9.55 0.4 651.4 0.0 2,-2 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000076575 Igkv7-33 ENSMUST00000197429 ENSMUSP00000142396 TRANSLATION IG_V_gene stop - - 121.0 0.0 1.0 0.0 47.8 0.0 4,-1 0.8264 - -2.0 PRINCIPAL:1 ENSMUSG00000030058 Copg1 ENSMUST00000149907 - NO_TRANSLATION retained_intron ENSMUSG00000030058 Copg1 ENSMUST00000127614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030058 Copg1 ENSMUST00000152175 - NO_TRANSLATION retained_intron ENSMUSG00000030058 Copg1 ENSMUST00000132938 - NO_TRANSLATION retained_intron ENSMUSG00000030058 Copg1 ENSMUST00000149409 - NO_TRANSLATION retained_intron ENSMUSG00000030058 Copg1 ENSMUST00000203240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030058 Copg1 ENSMUST00000049966 ENSMUSP00000050858 TRANSLATION protein_coding - CCDS39550.1 1 121.0 0.0 2.75 0.0 59.9 0.0 -4,-5 0.0072 6 0.0 MINOR ENSMUSG00000030058 Copg1 ENSMUST00000113607 ENSMUSP00000109237 TRANSLATION protein_coding - CCDS39549.1 1 874.0 0.0 20.3 36.2 787.1 0.0 -4,-5 1.0 36 16.0 PRINCIPAL:1 ENSMUSG00000030058 Copg1 ENSMUST00000137717 - NO_TRANSLATION retained_intron ENSMUSG00000030058 Copg1 ENSMUST00000205234 - NO_TRANSLATION retained_intron ENSMUSG00000094930 Igkv6-25 ENSMUST00000103383 ENSMUSP00000100184 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 54.7 0.0 4,-1 0.8257 - -2.0 PRINCIPAL:1 ENSMUSG00000030029 Lrig1 ENSMUST00000032105 ENSMUSP00000032105 TRANSLATION protein_coding - CCDS20380.1 1 1091.0 4.0 13.35 0.3 476.1 1.0 3,-2 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000030029 Lrig1 ENSMUST00000150811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030029 Lrig1 ENSMUST00000204645 ENSMUSP00000144963 TRANSLATION nonsense_mediated_decay - CCDS20380.1 1 1091.0 4.0 13.35 0.3 476.1 1.0 3,-2 1.0 15 -2.0 MINOR ENSMUSG00000030029 Lrig1 ENSMUST00000203876 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030029 Lrig1 ENSMUST00000101126 ENSMUSP00000098686 TRANSLATION protein_coding - CCDS20380.1 1 1091.0 4.0 13.35 0.3 476.1 1.0 3,-2 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000030029 Lrig1 ENSMUST00000141014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030029 Lrig1 ENSMUST00000124165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057230 Aak1 ENSMUST00000003710 ENSMUSP00000003710 TRANSLATION protein_coding - CCDS20317.1 5 878.0 3.0 8.646 0.0 147.5 0.0 -4,-6 0.3059 30 11.0 ALTERNATIVE:2 ENSMUSG00000057230 Aak1 ENSMUST00000204139 ENSMUSP00000158746 TRANSLATION protein_coding start - 5 510.0 0.0 0.0 0.0 134.7 0.0 -4,-7 0.026 12 -2.0 MINOR ENSMUSG00000057230 Aak1 ENSMUST00000204613 ENSMUSP00000158778 TRANSLATION protein_coding start/stop - 3 237.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0013 10 -2.0 MINOR ENSMUSG00000057230 Aak1 ENSMUST00000204793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057230 Aak1 ENSMUST00000156885 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057230 Aak1 ENSMUST00000204414 ENSMUSP00000145013 TRANSLATION protein_coding stop - 2 121.0 1.0 2.75 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000057230 Aak1 ENSMUST00000203647 - NO_TRANSLATION retained_intron ENSMUSG00000057230 Aak1 ENSMUST00000089519 ENSMUSP00000086948 TRANSLATION protein_coding - CCDS39544.1 1 959.0 3.0 8.646 0.0 147.5 0.0 -4,-6 1.0 31 11.0 PRINCIPAL:2 ENSMUSG00000057230 Aak1 ENSMUST00000113668 - NO_TRANSLATION retained_intron ENSMUSG00000043932 Klri2 ENSMUST00000050385 ENSMUSP00000052805 TRANSLATION protein_coding - CCDS20594.1 1 248.0 3.0 2.42 0.1 30.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000001761 Smo ENSMUST00000201515 - NO_TRANSLATION retained_intron ENSMUSG00000001761 Smo ENSMUST00000001812 ENSMUSP00000001812 TRANSLATION protein_coding - CCDS19965.1 1 793.0 0.0 8.8 4.0 361.8 0.0 1,-4 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000007827 Ankrd26 ENSMUST00000188022 - NO_TRANSLATION retained_intron ENSMUSG00000007827 Ankrd26 ENSMUST00000112830 ENSMUSP00000108449 TRANSLATION protein_coding - CCDS39609.1 5 1681.0 0.0 4.214 0.1 717.4 0.0 -4,0 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000007827 Ankrd26 ENSMUST00000188172 - NO_TRANSLATION retained_intron ENSMUSG00000072878 Nup50l ENSMUST00000090061 ENSMUSP00000087515 TRANSLATION protein_coding - - - 440.0 0.0 0.4 0.3 96.1 0.0 -4,-5 0.7952 - 12.0 PRINCIPAL:1 ENSMUSG00000029911 Ssbp1 ENSMUST00000201570 - NO_TRANSLATION retained_intron ENSMUSG00000029911 Ssbp1 ENSMUST00000141801 - NO_TRANSLATION retained_intron ENSMUSG00000029911 Ssbp1 ENSMUST00000031971 ENSMUSP00000031971 TRANSLATION protein_coding - CCDS20030.1 1 152.0 0.0 2.6 0.1 104.2 0.0 -4,0 0.0706 6 10.896 MINOR ENSMUSG00000029911 Ssbp1 ENSMUST00000114779 ENSMUSP00000110427 TRANSLATION protein_coding - CCDS39466.1 1 148.0 0.0 3.0 29.0 109.3 0.0 -4,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000029911 Ssbp1 ENSMUST00000117830 ENSMUSP00000113815 TRANSLATION protein_coding stop - 5 76.0 0.0 1.45 0.0 41.7 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000029911 Ssbp1 ENSMUST00000117411 ENSMUSP00000114082 TRANSLATION protein_coding - CCDS39466.1 1 148.0 0.0 3.0 29.0 109.3 0.0 -4,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000029911 Ssbp1 ENSMUST00000121360 ENSMUSP00000113563 TRANSLATION protein_coding - CCDS39466.1 1 148.0 0.0 3.0 29.0 109.3 0.0 -4,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000094200 Or2a14 ENSMUST00000216411 ENSMUSP00000149245 TRANSLATION protein_coding - CCDS20087.1 5 310.0 0.0 1.0 12.5 204.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094200 Or2a14 ENSMUST00000215911 ENSMUSP00000149261 TRANSLATION protein_coding - CCDS20087.1 5 310.0 0.0 1.0 12.5 204.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094200 Or2a14 ENSMUST00000095953 ENSMUSP00000093647 TRANSLATION protein_coding - CCDS20087.1 - 310.0 0.0 1.0 12.5 204.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029767 Calu ENSMUST00000173694 ENSMUSP00000133436 TRANSLATION protein_coding - - 5 154.0 14.0 3.35 0.0 38.1 0.0 2,-1 0.0018 11 3.252 MINOR ENSMUSG00000029767 Calu ENSMUST00000156163 ENSMUSP00000133615 TRANSLATION protein_coding start - 2 168.0 17.0 4.58 0.0 18.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000029767 Calu ENSMUST00000174096 ENSMUSP00000133945 TRANSLATION nonsense_mediated_decay start - 5 141.0 13.0 2.68 0.0 17.6 0.0 0,-3 0.0 9 -2.0 MINOR ENSMUSG00000029767 Calu ENSMUST00000090481 ENSMUSP00000087967 TRANSLATION protein_coding - CCDS19958.1 1 315.0 33.0 7.1 28.9 70.3 0.0 2,-1 1.0 18 19.174 MINOR ENSMUSG00000029767 Calu ENSMUST00000173216 ENSMUSP00000134708 TRANSLATION protein_coding - - 5 163.0 21.0 5.0 0.7 30.3 0.0 -4,-5 0.0023 10 2.586 MINOR ENSMUSG00000029767 Calu ENSMUST00000138523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029767 Calu ENSMUST00000031779 ENSMUSP00000031779 TRANSLATION protein_coding - CCDS19957.1 1 315.0 34.0 8.18 28.9 56.5 0.0 2,-1 0.9099 19 20.824 PRINCIPAL:1 ENSMUSG00000029767 Calu ENSMUST00000172974 ENSMUSP00000133390 TRANSLATION protein_coding - - 5 227.0 24.0 4.93 1.0 36.0 0.0 2,-1 0.0047 13 3.072 MINOR ENSMUSG00000029767 Calu ENSMUST00000172607 ENSMUSP00000133609 TRANSLATION protein_coding start - 3 74.0 9.0 2.5 0.0 20.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000029916 Agk ENSMUST00000031977 ENSMUSP00000031977 TRANSLATION protein_coding - CCDS20027.1 1 421.0 10.0 8.93 8.9 88.5 0.0 -1,-4 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000029916 Agk ENSMUST00000201342 - NO_TRANSLATION retained_intron ENSMUSG00000029916 Agk ENSMUST00000201751 - NO_TRANSLATION retained_intron ENSMUSG00000029916 Agk ENSMUST00000201033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029916 Agk ENSMUST00000201329 - NO_TRANSLATION retained_intron ENSMUSG00000029916 Agk ENSMUST00000202856 - NO_TRANSLATION retained_intron ENSMUSG00000029916 Agk ENSMUST00000202949 - NO_TRANSLATION retained_intron ENSMUSG00000029916 Agk ENSMUST00000200715 ENSMUSP00000143971 TRANSLATION nonsense_mediated_decay - - 5 78.0 1.0 1.85 0.0 0.0 0.0 -1,-4 0.0 3 -2.0 MINOR ENSMUSG00000012396 Nanog ENSMUST00000112581 ENSMUSP00000108200 TRANSLATION protein_coding - CCDS80607.1 1 280.0 0.0 1.55 0.0 66.1 0.0 -4,-5 0.2889 - 8.0 ALTERNATIVE:2 ENSMUSG00000012396 Nanog ENSMUST00000012540 ENSMUSP00000012540 TRANSLATION protein_coding - CCDS39623.1 1 305.0 0.0 1.55 0.1 66.1 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000012396 Nanog ENSMUST00000112580 ENSMUSP00000108199 TRANSLATION protein_coding - CCDS80607.1 1 280.0 0.0 1.55 0.0 66.1 0.0 -4,-5 0.2889 - 8.0 ALTERNATIVE:2 ENSMUSG00000043931 Gimap7 ENSMUST00000052503 ENSMUSP00000057143 TRANSLATION protein_coding - CCDS20112.1 1 293.0 20.0 2.0 6.7 267.9 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000043931 Gimap7 ENSMUST00000204266 - NO_TRANSLATION retained_intron ENSMUSG00000043931 Gimap7 ENSMUST00000204785 ENSMUSP00000145238 TRANSLATION protein_coding stop - 3 86.0 14.0 1.0 0.0 107.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000091734 Vmn1r29 ENSMUST00000226971 ENSMUSP00000154612 TRANSLATION protein_coding - CCDS20194.1 - 303.0 0.0 0.0 0.4 176.5 4.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091734 Vmn1r29 ENSMUST00000228038 ENSMUSP00000154376 TRANSLATION protein_coding - CCDS20194.1 - 303.0 0.0 0.0 0.4 176.5 4.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091734 Vmn1r29 ENSMUST00000168416 ENSMUSP00000129069 TRANSLATION protein_coding - CCDS20194.1 - 303.0 0.0 0.0 0.4 176.5 4.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091734 Vmn1r29 ENSMUST00000227761 ENSMUSP00000153943 TRANSLATION protein_coding - CCDS20194.1 - 303.0 0.0 0.0 0.4 176.5 4.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091734 Vmn1r29 ENSMUST00000228909 ENSMUSP00000154278 TRANSLATION protein_coding - CCDS20194.1 - 303.0 0.0 0.0 0.4 176.5 4.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000034083 Ccdc174 ENSMUST00000147188 - NO_TRANSLATION retained_intron ENSMUSG00000034083 Ccdc174 ENSMUST00000138868 - NO_TRANSLATION retained_intron ENSMUSG00000034083 Ccdc174 ENSMUST00000149546 - NO_TRANSLATION retained_intron ENSMUSG00000034083 Ccdc174 ENSMUST00000151378 - NO_TRANSLATION retained_intron ENSMUSG00000034083 Ccdc174 ENSMUST00000037783 ENSMUSP00000049280 TRANSLATION protein_coding - CCDS20370.2 1 467.0 0.0 0.0 9.5 96.7 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000034083 Ccdc174 ENSMUST00000136090 ENSMUSP00000146317 TRANSLATION nonsense_mediated_decay - - 2 104.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034083 Ccdc174 ENSMUST00000139240 - NO_TRANSLATION retained_intron ENSMUSG00000076499 Trbv31 ENSMUST00000193003 ENSMUSP00000141434 TRANSLATION TR_V_gene stop - - 111.0 0.0 1.3 0.0 28.2 0.0 4,-1 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000054497 Tas2r130 ENSMUST00000067597 ENSMUSP00000063954 TRANSLATION protein_coding - CCDS20608.1 - 312.0 0.0 0.0 10.3 362.5 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000030114 Klrg1 ENSMUST00000032207 ENSMUSP00000032207 TRANSLATION protein_coding - CCDS20492.1 1 188.0 0.0 3.0 5.6 44.0 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059410 Tas2r125 ENSMUST00000076119 ENSMUSP00000075483 TRANSLATION protein_coding - CCDS20628.1 - 311.0 0.0 0.0 0.1 297.4 0.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094902 Igkv10-95 ENSMUST00000103329 ENSMUSP00000100130 TRANSLATION IG_V_gene start/stop - - 95.0 3.0 1.0 0.0 63.3 0.0 -4,-5 0.0232 1 -2.0 ALTERNATIVE:2 ENSMUSG00000094902 Igkv10-95 ENSMUST00000198735 ENSMUSP00000143352 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.1 0.0 63.3 0.0 0,-4 0.8051 1 -2.0 PRINCIPAL:5 ENSMUSG00000076477 Trbv21 ENSMUST00000195087 ENSMUSP00000141778 TRANSLATION TR_V_gene stop - - 97.0 0.0 1.0 0.0 54.1 0.0 -4,-5 0.775 - -2.0 PRINCIPAL:1 ENSMUSG00000089862 Umad1 ENSMUST00000159378 ENSMUSP00000125672 TRANSLATION protein_coding stop - 3 104.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0059 - -2.0 MINOR ENSMUSG00000089862 Umad1 ENSMUST00000160705 ENSMUSP00000124993 TRANSLATION protein_coding - CCDS80487.1 2 159.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.1473 - 6.0 MINOR ENSMUSG00000089862 Umad1 ENSMUST00000161400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089862 Umad1 ENSMUST00000160253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089862 Umad1 ENSMUST00000159335 ENSMUSP00000123738 TRANSLATION protein_coding - - 1 156.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.0128 - 4.284 MINOR ENSMUSG00000089862 Umad1 ENSMUST00000159433 ENSMUSP00000124564 TRANSLATION protein_coding - CCDS80488.1 1 133.0 0.0 1.75 14.6 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000089862 Umad1 ENSMUST00000162034 ENSMUSP00000124306 TRANSLATION protein_coding - - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0078 - 0.0 MINOR ENSMUSG00000089862 Umad1 ENSMUST00000159168 ENSMUSP00000125134 TRANSLATION protein_coding - CCDS80488.1 1 133.0 0.0 1.75 14.6 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000096010 H4c16 ENSMUST00000179285 ENSMUSP00000136357 TRANSLATION protein_coding - CCDS39684.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030067 Foxp1 ENSMUST00000176565 ENSMUSP00000135181 TRANSLATION protein_coding - CCDS85105.1 1 705.0 4.0 4.125 0.0 215.0 0.0 -4,-5 0.1847 11 12.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000123992 ENSMUSP00000117550 TRANSLATION protein_coding stop - 5 124.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000177235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030067 Foxp1 ENSMUST00000177208 ENSMUSP00000135187 TRANSLATION protein_coding stop - 3 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000113321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030067 Foxp1 ENSMUST00000176850 ENSMUSP00000135041 TRANSLATION protein_coding - - 5 675.0 4.0 4.125 9.0 215.0 0.0 -4,-5 0.8522 10 15.0 PRINCIPAL:4 ENSMUSG00000030067 Foxp1 ENSMUST00000138754 - NO_TRANSLATION retained_intron ENSMUSG00000030067 Foxp1 ENSMUST00000113329 ENSMUSP00000108955 TRANSLATION protein_coding - - 1 641.0 4.0 3.125 0.0 174.2 0.0 -4,-5 0.0041 9 9.202 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000124058 ENSMUSP00000120244 TRANSLATION protein_coding stop - 5 348.0 4.0 1.375 0.0 118.9 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000113326 ENSMUSP00000108952 TRANSLATION protein_coding - CCDS57442.1 1 673.0 4.0 4.125 8.3 215.0 0.0 -4,-5 1.0 9 14.739 ALTERNATIVE:1 ENSMUSG00000030067 Foxp1 ENSMUST00000175670 ENSMUSP00000135237 TRANSLATION protein_coding stop - 3 32.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000177437 ENSMUSP00000135809 TRANSLATION protein_coding - CCDS57441.1 1 576.0 4.0 4.125 7.1 215.0 0.0 -4,-7 0.7712 9 14.286 ALTERNATIVE:1 ENSMUSG00000030067 Foxp1 ENSMUST00000113324 ENSMUSP00000108950 TRANSLATION protein_coding - - 5 706.0 4.0 4.125 0.0 215.0 0.0 -4,-5 0.0438 10 12.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000142164 - NO_TRANSLATION retained_intron ENSMUSG00000030067 Foxp1 ENSMUST00000074346 ENSMUSP00000073953 TRANSLATION protein_coding - CCDS39578.1 1 705.0 4.0 4.125 0.0 215.0 0.0 -4,-5 0.1847 10 12.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000113322 ENSMUSP00000108948 TRANSLATION protein_coding - CCDS39578.1 5 705.0 4.0 4.125 0.0 215.0 0.0 -4,-5 0.1847 10 12.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000075832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030067 Foxp1 ENSMUST00000131967 - NO_TRANSLATION retained_intron ENSMUSG00000030067 Foxp1 ENSMUST00000177227 ENSMUSP00000135229 TRANSLATION protein_coding stop - 5 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000177229 ENSMUSP00000134817 TRANSLATION protein_coding - - 5 577.0 4.0 4.125 7.1 215.0 0.0 -4,-7 0.6636 9 14.286 ALTERNATIVE:1 ENSMUSG00000030067 Foxp1 ENSMUST00000176632 ENSMUSP00000135635 TRANSLATION protein_coding - - 5 674.0 4.0 4.125 9.0 215.0 0.0 -4,-5 0.8513 10 15.0 ALTERNATIVE:1 ENSMUSG00000030067 Foxp1 ENSMUST00000177307 ENSMUSP00000135764 TRANSLATION protein_coding - - 1 706.0 4.0 4.125 0.0 215.0 0.0 -4,-5 0.0438 11 12.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000175838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030067 Foxp1 ENSMUST00000177507 ENSMUSP00000134869 TRANSLATION protein_coding stop - 2 107.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000175880 - NO_TRANSLATION retained_intron ENSMUSG00000030067 Foxp1 ENSMUST00000177410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030067 Foxp1 ENSMUST00000177230 ENSMUSP00000135098 TRANSLATION nonsense_mediated_decay - - 5 564.0 4.0 4.125 0.0 215.0 0.0 -4,-5 0.0263 9 -2.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000176105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030067 Foxp1 ENSMUST00000113328 ENSMUSP00000108954 TRANSLATION protein_coding - - 1 706.0 4.0 4.125 0.0 215.0 0.0 -4,-5 0.0438 11 12.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000154163 ENSMUSP00000121404 TRANSLATION protein_coding stop - 5 188.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000030067 Foxp1 ENSMUST00000175886 ENSMUSP00000135517 TRANSLATION protein_coding stop - 3 111.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000023505 Cdca3 ENSMUST00000136692 - NO_TRANSLATION retained_intron ENSMUSG00000023505 Cdca3 ENSMUST00000024270 ENSMUSP00000024270 TRANSLATION protein_coding - CCDS39629.1 1 266.0 0.0 0.0 9.1 0.0 0.0 -4,-2 1.0 5 3.0 PRINCIPAL:1 ENSMUSG00000023505 Cdca3 ENSMUST00000150120 ENSMUSP00000116849 TRANSLATION protein_coding stop - 3 213.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0328 4 -2.0 MINOR ENSMUSG00000023505 Cdca3 ENSMUST00000131847 ENSMUSP00000120410 TRANSLATION protein_coding stop - 5 187.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0227 4 -2.0 MINOR ENSMUSG00000023505 Cdca3 ENSMUST00000134637 - NO_TRANSLATION retained_intron ENSMUSG00000023505 Cdca3 ENSMUST00000151674 ENSMUSP00000120626 TRANSLATION protein_coding stop - 3 180.0 0.0 0.0 1.0 0.0 0.0 -4,-2 0.1246 3 -2.0 MINOR ENSMUSG00000076494 Trbj2-3 ENSMUST00000103295 ENSMUSP00000141968 TRANSLATION TR_J_gene start/stop - - 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000034968 Lbx2 ENSMUST00000041265 ENSMUSP00000047134 TRANSLATION protein_coding - CCDS20271.1 1 195.0 0.0 1.0 3.4 68.5 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000034968 Lbx2 ENSMUST00000151508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046679 C87436 ENSMUST00000141972 ENSMUSP00000115916 TRANSLATION nonsense_mediated_decay - - 1 387.0 4.0 0.0 0.0 71.3 0.0 -4,-6 0.0349 3 -2.0 MINOR ENSMUSG00000046679 C87436 ENSMUST00000133753 ENSMUSP00000121520 TRANSLATION nonsense_mediated_decay - - 1 387.0 4.0 0.0 0.0 71.3 0.0 -4,-6 0.0349 - -2.0 MINOR ENSMUSG00000046679 C87436 ENSMUST00000203568 ENSMUSP00000144724 TRANSLATION protein_coding stop - 2 125.0 4.0 0.0 0.0 71.3 0.0 -4,-6 0.0207 1 -2.0 MINOR ENSMUSG00000046679 C87436 ENSMUST00000113700 ENSMUSP00000109330 TRANSLATION protein_coding - CCDS20313.1 1 574.0 4.0 0.0 14.5 71.3 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000046679 C87436 ENSMUST00000148768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046679 C87436 ENSMUST00000113698 ENSMUSP00000109328 TRANSLATION protein_coding - CCDS57435.1 1 564.0 4.0 0.0 0.7 71.3 0.0 -4,-6 0.3572 3 10.0 MINOR ENSMUSG00000046679 C87436 ENSMUST00000050497 ENSMUSP00000057461 TRANSLATION protein_coding - CCDS20313.1 1 574.0 4.0 0.0 14.5 71.3 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000046679 C87436 ENSMUST00000143430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033082 Clec1a ENSMUST00000037481 ENSMUSP00000047065 TRANSLATION protein_coding - CCDS20587.1 1 269.0 4.0 5.33 5.6 54.9 1.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000033082 Clec1a ENSMUST00000204012 ENSMUSP00000145071 TRANSLATION protein_coding stop - 3 164.0 2.0 2.33 0.0 0.0 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000033082 Clec1a ENSMUST00000203162 ENSMUSP00000144896 TRANSLATION protein_coding - CCDS85169.1 1 206.0 2.0 3.43 1.1 0.0 1.0 -4,-6 0.0587 2 4.246 MINOR ENSMUSG00000033082 Clec1a ENSMUST00000204952 ENSMUSP00000145497 TRANSLATION nonsense_mediated_decay - - 5 77.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043865 Tas2r118 ENSMUST00000062463 ENSMUSP00000053700 TRANSLATION protein_coding - CCDS19939.1 - 299.0 0.0 0.0 1.5 285.5 0.0 -1,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000004267 Eno2 ENSMUST00000138770 ENSMUSP00000144854 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 0.915 0.0 39.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004267 Eno2 ENSMUST00000146712 - NO_TRANSLATION retained_intron ENSMUSG00000004267 Eno2 ENSMUST00000139763 - NO_TRANSLATION retained_intron ENSMUSG00000004267 Eno2 ENSMUST00000004378 ENSMUSP00000004378 TRANSLATION protein_coding - CCDS20527.1 1 434.0 7.0 10.25 36.9 720.7 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000004267 Eno2 ENSMUST00000127274 ENSMUSP00000145216 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 0.915 0.0 39.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004267 Eno2 ENSMUST00000135626 ENSMUSP00000114500 TRANSLATION protein_coding stop - 3 121.0 1.0 3.05 0.0 148.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000004267 Eno2 ENSMUST00000204896 ENSMUSP00000144861 TRANSLATION protein_coding - - 5 391.0 7.0 9.0 1.0 601.6 0.0 -4,-5 0.0389 12 9.498 MINOR ENSMUSG00000004267 Eno2 ENSMUST00000147307 - NO_TRANSLATION retained_intron ENSMUSG00000004267 Eno2 ENSMUST00000156033 ENSMUSP00000144698 TRANSLATION protein_coding stop - 5 58.0 1.0 1.5 0.0 86.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004267 Eno2 ENSMUST00000128701 - NO_TRANSLATION retained_intron ENSMUSG00000004267 Eno2 ENSMUST00000125436 - NO_TRANSLATION retained_intron ENSMUSG00000004267 Eno2 ENSMUST00000112476 ENSMUSP00000108095 TRANSLATION protein_coding - CCDS80609.1 1 315.0 7.0 7.75 1.1 508.1 0.0 -4,-5 0.0161 11 7.014 MINOR ENSMUSG00000004267 Eno2 ENSMUST00000128598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004267 Eno2 ENSMUST00000151214 ENSMUSP00000145131 TRANSLATION nonsense_mediated_decay - - 5 37.0 0.0 0.915 0.0 39.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004267 Eno2 ENSMUST00000147004 - NO_TRANSLATION retained_intron ENSMUSG00000004267 Eno2 ENSMUST00000149652 ENSMUSP00000119112 TRANSLATION protein_coding stop - 2 162.0 1.0 4.25 0.0 227.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039419 Cntnap2 ENSMUST00000199100 ENSMUSP00000143528 TRANSLATION protein_coding - CCDS20094.1 1 108.0 0.0 0.4 0.1 0.0 1.0 -4,-6 0.0316 - 0.0 MINOR ENSMUSG00000039419 Cntnap2 ENSMUST00000114641 ENSMUSP00000110288 TRANSLATION protein_coding - CCDS39475.1 1 1332.0 12.0 8.35 9.7 446.8 1.0 4,-3 1.0 28 21.0 PRINCIPAL:1 ENSMUSG00000039419 Cntnap2 ENSMUST00000060839 ENSMUSP00000056299 TRANSLATION protein_coding - CCDS20094.1 1 108.0 0.0 0.4 0.1 0.0 1.0 -4,-6 0.0316 - 0.0 MINOR ENSMUSG00000039419 Cntnap2 ENSMUST00000150737 ENSMUSP00000142656 TRANSLATION protein_coding stop - 3 79.0 4.0 0.48 0.0 24.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039419 Cntnap2 ENSMUST00000207647 ENSMUSP00000147145 TRANSLATION protein_coding stop - 5 119.0 0.0 2.2 0.0 54.2 0.0 4,-3 0.0 4 -2.0 MINOR ENSMUSG00000039419 Cntnap2 ENSMUST00000196561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076462 Trbv2 ENSMUST00000103263 ENSMUSP00000100079 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.0 0.0 52.9 0.0 1,-2 0.827 - -2.0 PRINCIPAL:1 ENSMUSG00000076470 Trbv13-3 ENSMUST00000103271 ENSMUSP00000100087 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.0 0.0 67.1 0.0 4,-1 0.8248 - -2.0 PRINCIPAL:1 ENSMUSG00000094808 1810009J06Rik ENSMUST00000076638 ENSMUSP00000075935 TRANSLATION protein_coding - CCDS20042.1 1 247.0 20.0 4.0 33.9 257.8 0.0 3,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000090698 Apold1 ENSMUST00000167323 ENSMUSP00000132366 TRANSLATION protein_coding - CCDS51938.1 2 246.0 0.0 0.0 7.1 50.0 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000068794 Col28a1 ENSMUST00000213284 ENSMUSP00000150110 TRANSLATION protein_coding stop - 5 234.0 4.0 0.4 0.0 80.5 0.0 3,-3 0.0 2 -2.0 MINOR ENSMUSG00000068794 Col28a1 ENSMUST00000134731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068794 Col28a1 ENSMUST00000115537 ENSMUSP00000111199 TRANSLATION protein_coding - CCDS39424.1 1 1141.0 8.0 3.3565 7.1 281.2 0.0 3,-3 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000068794 Col28a1 ENSMUST00000123163 - NO_TRANSLATION retained_intron ENSMUSG00000105606 Igkv2-109 ENSMUST00000103322 ENSMUSP00000100123 TRANSLATION IG_V_gene stop - - 120.0 0.0 1.2 0.0 59.0 0.0 4,-1 0.8221 1 -2.0 PRINCIPAL:1 ENSMUSG00000076465 Trbv5 ENSMUST00000103266 ENSMUSP00000100082 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.0 0.0 45.8 0.0 -1,-4 0.7871 1 -2.0 PRINCIPAL:1 ENSMUSG00000029563 Foxp2 ENSMUST00000159788 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029563 Foxp2 ENSMUST00000115469 ENSMUSP00000111129 TRANSLATION protein_coding - - 5 430.0 4.0 1.375 1.0 121.4 0.0 -4,-5 0.0141 3 4.822 MINOR ENSMUSG00000029563 Foxp2 ENSMUST00000115477 ENSMUSP00000111137 TRANSLATION protein_coding - CCDS19918.1 1 714.0 4.0 4.125 13.2 216.0 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000029563 Foxp2 ENSMUST00000115475 ENSMUSP00000111135 TRANSLATION nonsense_mediated_decay start - 5 56.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029563 Foxp2 ENSMUST00000152563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029563 Foxp2 ENSMUST00000140557 ENSMUSP00000121503 TRANSLATION protein_coding stop - 5 260.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000029563 Foxp2 ENSMUST00000115470 ENSMUSP00000111130 TRANSLATION protein_coding - - 1 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000029563 Foxp2 ENSMUST00000115474 ENSMUSP00000111134 TRANSLATION protein_coding - - 5 739.0 4.0 4.125 4.6 216.0 0.0 -4,-5 0.304 3 17.18 MINOR ENSMUSG00000029563 Foxp2 ENSMUST00000128567 ENSMUSP00000123067 TRANSLATION protein_coding stop - 5 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029563 Foxp2 ENSMUST00000115472 ENSMUSP00000111132 TRANSLATION protein_coding - CCDS71726.1 1 693.0 4.0 4.125 0.7 216.0 0.0 -4,-5 0.3535 3 16.0 MINOR ENSMUSG00000029563 Foxp2 ENSMUST00000154448 ENSMUSP00000116017 TRANSLATION protein_coding stop - 2 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029563 Foxp2 ENSMUST00000156883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029563 Foxp2 ENSMUST00000031545 ENSMUSP00000031545 TRANSLATION protein_coding - CCDS19918.1 1 714.0 4.0 4.125 13.2 216.0 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000029563 Foxp2 ENSMUST00000137628 ENSMUSP00000116650 TRANSLATION protein_coding stop - 3 171.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029563 Foxp2 ENSMUST00000204869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029563 Foxp2 ENSMUST00000138273 - NO_TRANSLATION retained_intron ENSMUSG00000029563 Foxp2 ENSMUST00000151301 - NO_TRANSLATION retained_intron ENSMUSG00000029563 Foxp2 ENSMUST00000131414 ENSMUSP00000123007 TRANSLATION protein_coding - - 5 456.0 4.0 1.375 1.7 121.4 0.0 -4,-5 0.0293 3 5.05 MINOR ENSMUSG00000029563 Foxp2 ENSMUST00000203227 - NO_TRANSLATION retained_intron ENSMUSG00000029563 Foxp2 ENSMUST00000151060 - NO_TRANSLATION retained_intron ENSMUSG00000030147 Clec4b1 ENSMUST00000078559 ENSMUSP00000077636 TRANSLATION protein_coding - CCDS51893.1 1 209.0 5.0 5.0 1.6 76.1 0.0 -3,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030147 Clec4b1 ENSMUST00000077228 ENSMUSP00000076466 TRANSLATION protein_coding - CCDS39625.1 1 176.0 5.0 4.0 0.0 76.1 0.0 -3,-5 0.0691 - 15.002 MINOR ENSMUSG00000030061 Uba3 ENSMUST00000204391 - NO_TRANSLATION retained_intron ENSMUSG00000030061 Uba3 ENSMUST00000203215 - NO_TRANSLATION retained_intron ENSMUSG00000030061 Uba3 ENSMUST00000164744 ENSMUSP00000130954 TRANSLATION protein_coding - CCDS51859.1 1 448.0 22.0 12.25 31.8 311.1 0.0 -4,-5 0.9779 11 17.644 ALTERNATIVE:1 ENSMUSG00000030061 Uba3 ENSMUST00000204056 ENSMUSP00000145309 TRANSLATION nonsense_mediated_decay - - 1 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030061 Uba3 ENSMUST00000204917 - NO_TRANSLATION retained_intron ENSMUSG00000030061 Uba3 ENSMUST00000089287 ENSMUSP00000086701 TRANSLATION protein_coding - CCDS51860.1 1 462.0 22.0 12.25 34.8 311.1 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:4 ENSMUSG00000030314 Atg7 ENSMUST00000203130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030314 Atg7 ENSMUST00000182934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030314 Atg7 ENSMUST00000182035 ENSMUSP00000138731 TRANSLATION protein_coding stop - 5 222.0 0.0 3.808 0.0 223.7 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000030314 Atg7 ENSMUST00000032457 ENSMUSP00000032457 TRANSLATION protein_coding - CCDS39598.1 1 698.0 20.0 9.3455 1.8 533.8 0.0 -4,-5 1.0 26 15.0 PRINCIPAL:2 ENSMUSG00000030314 Atg7 ENSMUST00000182902 ENSMUSP00000138651 TRANSLATION protein_coding - CCDS39598.1 2 698.0 20.0 9.3455 1.8 533.8 0.0 -4,-5 1.0 26 15.0 PRINCIPAL:2 ENSMUSG00000030314 Atg7 ENSMUST00000182034 ENSMUSP00000138358 TRANSLATION protein_coding stop - 3 232.0 0.0 3.928 0.0 221.4 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000030314 Atg7 ENSMUST00000182169 ENSMUSP00000138404 TRANSLATION protein_coding stop - 5 110.0 0.0 1.208 0.0 90.6 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000030314 Atg7 ENSMUST00000169310 ENSMUSP00000133215 TRANSLATION protein_coding - CCDS59697.1 1 741.0 20.0 9.3455 0.0 533.8 0.0 -4,-2 0.2496 26 14.0 ALTERNATIVE:2 ENSMUSG00000030314 Atg7 ENSMUST00000182098 ENSMUSP00000138253 TRANSLATION protein_coding stop - 3 41.0 0.0 0.6 0.0 45.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030314 Atg7 ENSMUST00000183165 ENSMUSP00000138600 TRANSLATION protein_coding - - 5 618.0 20.0 8.1455 0.0 465.5 0.0 -4,-5 0.0106 23 9.6 MINOR ENSMUSG00000030314 Atg7 ENSMUST00000183127 - NO_TRANSLATION retained_intron ENSMUSG00000030314 Atg7 ENSMUST00000182793 ENSMUSP00000138137 TRANSLATION protein_coding - CCDS39598.1 1 698.0 20.0 9.3455 1.8 533.8 0.0 -4,-5 1.0 26 15.0 PRINCIPAL:2 ENSMUSG00000030314 Atg7 ENSMUST00000182428 ENSMUSP00000138779 TRANSLATION protein_coding - - 5 671.0 18.0 8.7455 0.7 520.4 0.0 -4,-5 0.1098 24 11.468 MINOR ENSMUSG00000030314 Atg7 ENSMUST00000182860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030314 Atg7 ENSMUST00000182771 ENSMUSP00000138374 TRANSLATION protein_coding stop - 2 67.0 0.0 0.798 0.0 71.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030314 Atg7 ENSMUST00000182510 ENSMUSP00000138300 TRANSLATION protein_coding stop - 5 172.0 0.0 3.608 0.0 205.4 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000030314 Atg7 ENSMUST00000204593 - NO_TRANSLATION retained_intron ENSMUSG00000053907 Mat2a ENSMUST00000206962 - NO_TRANSLATION retained_intron ENSMUSG00000053907 Mat2a ENSMUST00000205823 ENSMUSP00000145983 TRANSLATION protein_coding start - 5 55.0 0.0 0.5 0.0 25.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053907 Mat2a ENSMUST00000206368 - NO_TRANSLATION retained_intron ENSMUSG00000053907 Mat2a ENSMUST00000205384 ENSMUSP00000146301 TRANSLATION protein_coding start/stop - 5 192.0 6.0 4.25 0.0 207.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000053907 Mat2a ENSMUST00000059472 ENSMUSP00000087118 TRANSLATION protein_coding - CCDS39515.1 1 395.0 9.0 8.8 36.9 534.0 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000053907 Mat2a ENSMUST00000205335 ENSMUSP00000145696 TRANSLATION protein_coding - - 1 362.0 9.0 7.8 3.0 487.8 0.0 -4,-5 0.0476 8 13.454 MINOR ENSMUSG00000053907 Mat2a ENSMUST00000206900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053907 Mat2a ENSMUST00000206783 - NO_TRANSLATION retained_intron ENSMUSG00000053907 Mat2a ENSMUST00000206904 ENSMUSP00000146319 TRANSLATION nonsense_mediated_decay start - 3 36.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053907 Mat2a ENSMUST00000206692 ENSMUSP00000145603 TRANSLATION protein_coding - - 1 365.0 9.0 7.8 3.0 489.3 0.0 -4,-5 0.0479 8 13.544 MINOR ENSMUSG00000001632 Brpf1 ENSMUST00000138737 - NO_TRANSLATION retained_intron ENSMUSG00000001632 Brpf1 ENSMUST00000131594 - NO_TRANSLATION retained_intron ENSMUSG00000001632 Brpf1 ENSMUST00000204626 ENSMUSP00000145093 TRANSLATION protein_coding - CCDS85115.1 1 1218.0 18.0 5.635 11.0 431.2 0.0 -4,-5 0.8254 10 16.17 ALTERNATIVE:1 ENSMUSG00000001632 Brpf1 ENSMUST00000113121 ENSMUSP00000108746 TRANSLATION protein_coding - - 5 1219.0 18.0 5.635 11.0 431.2 0.0 -4,-5 0.6989 10 16.17 ALTERNATIVE:1 ENSMUSG00000001632 Brpf1 ENSMUST00000204198 ENSMUSP00000144804 TRANSLATION protein_coding - - 5 1118.0 18.0 5.8 8.3 437.7 0.0 -4,-5 0.6414 8 16.19 ALTERNATIVE:1 ENSMUSG00000001632 Brpf1 ENSMUST00000113119 ENSMUSP00000108744 TRANSLATION protein_coding - CCDS71809.1 1 1247.0 18.0 5.8 9.4 437.7 0.0 -4,-5 0.8363 10 16.52 ALTERNATIVE:1 ENSMUSG00000001632 Brpf1 ENSMUST00000124530 - NO_TRANSLATION retained_intron ENSMUSG00000001632 Brpf1 ENSMUST00000203577 ENSMUSP00000144820 TRANSLATION protein_coding - - 5 1252.0 18.0 5.635 9.4 431.2 0.0 -4,-5 0.6662 10 15.69 MINOR ENSMUSG00000001632 Brpf1 ENSMUST00000113122 ENSMUSP00000108747 TRANSLATION protein_coding - CCDS71810.1 5 1212.0 18.0 5.8 11.0 437.7 0.0 -4,-5 1.0 10 17.0 PRINCIPAL:4 ENSMUSG00000001632 Brpf1 ENSMUST00000113117 ENSMUSP00000108742 TRANSLATION protein_coding - CCDS39592.1 1 1246.0 18.0 5.8 9.4 437.7 0.0 -4,-5 0.8363 10 16.52 ALTERNATIVE:1 ENSMUSG00000063568 Jazf1 ENSMUST00000128282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063568 Jazf1 ENSMUST00000074541 ENSMUSP00000074129 TRANSLATION protein_coding - CCDS20152.1 1 243.0 6.0 0.0 27.2 0.0 0.0 -4,-7 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000063568 Jazf1 ENSMUST00000136250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030111 A2m ENSMUST00000203413 - NO_TRANSLATION retained_intron ENSMUSG00000030111 A2m ENSMUST00000032203 ENSMUSP00000032203 TRANSLATION protein_coding - CCDS39617.1 1 1474.0 2.0 29.43 0.0 704.4 0.0 3,-2 1.0 30 14.0 PRINCIPAL:1 ENSMUSG00000030111 A2m ENSMUST00000204850 ENSMUSP00000144862 TRANSLATION protein_coding stop - 3 35.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057841 Rpl32 ENSMUST00000203816 ENSMUSP00000145350 TRANSLATION protein_coding - CCDS20443.1 2 135.0 0.0 3.0 36.9 203.7 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000057841 Rpl32 ENSMUST00000081840 ENSMUSP00000080523 TRANSLATION protein_coding - CCDS20443.1 1 135.0 0.0 3.0 36.9 203.7 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000050786 Ccdc126 ENSMUST00000114491 ENSMUSP00000110135 TRANSLATION protein_coding - CCDS80531.1 5 103.0 0.0 0.0 0.0 136.7 0.0 -1,-4 0.0246 - 0.0 MINOR ENSMUSG00000050786 Ccdc126 ENSMUST00000055559 ENSMUSP00000058077 TRANSLATION protein_coding - CCDS20125.1 1 140.0 0.0 0.0 20.2 243.5 0.0 -1,-4 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000040102 Klhl42 ENSMUST00000203866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040102 Klhl42 ENSMUST00000203441 ENSMUSP00000145444 TRANSLATION nonsense_mediated_decay start - 3 17.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040102 Klhl42 ENSMUST00000036003 ENSMUSP00000042558 TRANSLATION protein_coding - CCDS39716.1 1 493.0 0.0 1.19 1.6 64.0 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000037709 Fam13a ENSMUST00000173193 ENSMUSP00000134135 TRANSLATION protein_coding - - 5 665.0 0.0 0.0 1.0 0.0 0.0 -4,-5 0.1941 3 0.0 MINOR ENSMUSG00000037709 Fam13a ENSMUST00000174307 - NO_TRANSLATION retained_intron ENSMUSG00000037709 Fam13a ENSMUST00000204616 - NO_TRANSLATION retained_intron ENSMUSG00000037709 Fam13a ENSMUST00000089860 ENSMUSP00000087304 TRANSLATION protein_coding - CCDS39499.1 1 693.0 0.0 0.0 4.4 0.0 0.0 -4,-5 1.0 5 2.0 PRINCIPAL:1 ENSMUSG00000037709 Fam13a ENSMUST00000173712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038641 Akr1d1 ENSMUST00000040987 ENSMUSP00000048830 TRANSLATION protein_coding - CCDS20007.1 1 325.0 48.0 8.0 26.5 160.8 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000038641 Akr1d1 ENSMUST00000123648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030263 Irag2 ENSMUST00000132948 ENSMUSP00000120248 TRANSLATION protein_coding start - 1 504.0 0.0 0.0 0.0 815.0 1.0 -4,-6 0.0876 10 -2.0 MINOR ENSMUSG00000030263 Irag2 ENSMUST00000149244 - NO_TRANSLATION retained_intron ENSMUSG00000030263 Irag2 ENSMUST00000132937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030263 Irag2 ENSMUST00000125029 - NO_TRANSLATION retained_intron ENSMUSG00000030263 Irag2 ENSMUST00000156849 ENSMUSP00000115043 TRANSLATION protein_coding start/stop - 5 196.0 0.0 0.0 0.0 240.3 0.0 -4,-7 0.0002 4 -2.0 MINOR ENSMUSG00000030263 Irag2 ENSMUST00000135984 ENSMUSP00000121986 TRANSLATION nonsense_mediated_decay - - 1 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030263 Irag2 ENSMUST00000032396 ENSMUSP00000032396 TRANSLATION protein_coding - CCDS39704.1 1 539.0 0.0 0.0 0.0 870.9 1.0 -4,-5 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000030263 Irag2 ENSMUST00000135191 - NO_TRANSLATION retained_intron ENSMUSG00000030263 Irag2 ENSMUST00000152571 ENSMUSP00000120166 TRANSLATION protein_coding stop - 3 198.0 0.0 0.0 0.0 160.1 0.0 -4,-5 0.0002 3 -2.0 MINOR ENSMUSG00000030263 Irag2 ENSMUST00000143631 - NO_TRANSLATION retained_intron ENSMUSG00000038058 Nod1 ENSMUST00000060655 ENSMUSP00000055747 TRANSLATION protein_coding - CCDS20160.1 1 953.0 7.0 8.153 8.5 278.1 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000038058 Nod1 ENSMUST00000168172 ENSMUSP00000130487 TRANSLATION protein_coding - CCDS20160.1 1 953.0 7.0 8.153 8.5 278.1 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000038058 Nod1 ENSMUST00000203916 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038058 Nod1 ENSMUST00000203076 ENSMUSP00000145123 TRANSLATION protein_coding start/stop - 5 257.0 0.0 4.014 0.0 65.2 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000038058 Nod1 ENSMUST00000203837 ENSMUSP00000145005 TRANSLATION protein_coding stop - 2 52.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038058 Nod1 ENSMUST00000205242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079426 Arpc4 ENSMUST00000171058 ENSMUSP00000131690 TRANSLATION protein_coding - CCDS51871.1 5 91.0 0.0 2.25 1.1 149.0 0.0 -4,-5 0.0032 2 2.014 MINOR ENSMUSG00000079426 Arpc4 ENSMUST00000156898 ENSMUSP00000114839 TRANSLATION protein_coding - CCDS20417.1 1 168.0 0.0 4.25 23.7 280.7 0.0 -4,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000079426 Arpc4 ENSMUST00000204802 ENSMUSP00000144751 TRANSLATION protein_coding - CCDS85117.1 3 78.0 0.0 1.75 2.8 129.8 0.0 -4,-2 0.0484 2 1.318 MINOR ENSMUSG00000079426 Arpc4 ENSMUST00000203578 ENSMUSP00000145344 TRANSLATION protein_coding - CCDS85117.1 1 78.0 0.0 1.75 2.8 129.8 0.0 -4,-2 0.0484 2 1.318 MINOR ENSMUSG00000076492 Trbj2-1 ENSMUST00000103293 ENSMUSP00000141722 TRANSLATION TR_J_gene start/stop - - 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000030325 Klrb1c ENSMUST00000174865 ENSMUSP00000134055 TRANSLATION protein_coding stop - 3 77.0 0.0 0.4 0.0 0.0 1.0 -4,-7 0.003 - -2.0 MINOR ENSMUSG00000030325 Klrb1c ENSMUST00000172601 ENSMUSP00000134184 TRANSLATION protein_coding - - 1 217.0 0.0 3.964 0.1 70.9 1.0 -4,-7 0.0892 1 8.0 ALTERNATIVE:2 ENSMUSG00000030325 Klrb1c ENSMUST00000174404 ENSMUSP00000134504 TRANSLATION protein_coding - - 1 223.0 0.0 3.964 0.1 70.9 1.0 -4,-7 0.7417 1 8.0 PRINCIPAL:2 ENSMUSG00000030325 Klrb1c ENSMUST00000167691 ENSMUSP00000127297 TRANSLATION protein_coding - - 1 220.0 0.0 3.964 0.1 70.9 1.0 -4,-7 0.1581 2 8.0 ALTERNATIVE:2 ENSMUSG00000030359 Pzp ENSMUST00000112132 ENSMUSP00000107760 TRANSLATION protein_coding - CCDS39650.1 1 1495.0 2.0 27.17 0.0 719.6 0.0 3,-2 1.0 60 14.0 PRINCIPAL:1 ENSMUSG00000030359 Pzp ENSMUST00000204291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030359 Pzp ENSMUST00000143664 ENSMUSP00000120114 TRANSLATION protein_coding stop - 5 233.0 0.0 3.5 0.0 59.1 0.0 3,-2 0.0 4 -2.0 MINOR ENSMUSG00000030359 Pzp ENSMUST00000203753 - NO_TRANSLATION retained_intron ENSMUSG00000030001 Figla ENSMUST00000201361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030001 Figla ENSMUST00000032070 ENSMUSP00000032070 TRANSLATION protein_coding - CCDS20307.1 1 194.0 0.0 2.0 0.1 57.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029661 Col1a2 ENSMUST00000124686 - NO_TRANSLATION retained_intron ENSMUSG00000029661 Col1a2 ENSMUST00000132029 - NO_TRANSLATION retained_intron ENSMUSG00000029661 Col1a2 ENSMUST00000031668 ENSMUSP00000031668 TRANSLATION protein_coding - CCDS39420.1 1 1372.0 0.0 32.46 6.8 512.2 0.0 1,-3 1.0 45 14.0 PRINCIPAL:1 ENSMUSG00000029661 Col1a2 ENSMUST00000203346 - NO_TRANSLATION retained_intron ENSMUSG00000029661 Col1a2 ENSMUST00000138511 - NO_TRANSLATION retained_intron ENSMUSG00000029661 Col1a2 ENSMUST00000155687 - NO_TRANSLATION retained_intron ENSMUSG00000029661 Col1a2 ENSMUST00000141483 ENSMUSP00000125275 TRANSLATION protein_coding stop - 5 177.0 0.0 2.83 0.0 72.1 0.0 1,-3 0.0008 1 -2.0 MINOR ENSMUSG00000029661 Col1a2 ENSMUST00000148864 - NO_TRANSLATION retained_intron ENSMUSG00000091983 Or2r3 ENSMUST00000170504 ENSMUSP00000127348 TRANSLATION protein_coding - CCDS20072.1 - 313.0 0.0 1.0 13.8 178.4 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091983 Or2r3 ENSMUST00000204324 ENSMUSP00000144914 TRANSLATION protein_coding - CCDS20072.1 3 313.0 0.0 1.0 13.8 178.4 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091983 Or2r3 ENSMUST00000203396 ENSMUSP00000145162 TRANSLATION protein_coding - CCDS20072.1 3 313.0 0.0 1.0 13.8 178.4 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000054226 Tprkb ENSMUST00000201289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054226 Tprkb ENSMUST00000201939 ENSMUSP00000144588 TRANSLATION protein_coding stop - 3 110.0 0.0 2.75 0.0 88.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000054226 Tprkb ENSMUST00000201217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054226 Tprkb ENSMUST00000113752 ENSMUSP00000109381 TRANSLATION protein_coding - CCDS20305.1 5 175.0 0.0 4.83 24.9 150.1 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000054226 Tprkb ENSMUST00000113753 ENSMUSP00000109382 TRANSLATION protein_coding - CCDS20305.1 1 175.0 0.0 4.83 24.9 150.1 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000054226 Tprkb ENSMUST00000202803 ENSMUSP00000144660 TRANSLATION protein_coding - - 1 158.0 0.0 4.146 0.0 127.9 0.0 -4,-6 0.0019 2 9.3 MINOR ENSMUSG00000054226 Tprkb ENSMUST00000202142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054226 Tprkb ENSMUST00000150249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054226 Tprkb ENSMUST00000113751 ENSMUSP00000109380 TRANSLATION protein_coding - - 1 91.0 0.0 2.33 0.0 73.7 0.0 -4,-6 0.0 1 2.418 MINOR ENSMUSG00000054226 Tprkb ENSMUST00000067137 ENSMUSP00000063927 TRANSLATION protein_coding - CCDS20305.1 1 175.0 0.0 4.83 24.9 150.1 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000054226 Tprkb ENSMUST00000202588 - NO_TRANSLATION retained_intron ENSMUSG00000054226 Tprkb ENSMUST00000200680 ENSMUSP00000144160 TRANSLATION protein_coding - CCDS20305.1 3 175.0 0.0 4.83 24.9 150.1 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000054226 Tprkb ENSMUST00000089570 ENSMUSP00000086998 TRANSLATION protein_coding - - 5 158.0 0.0 4.146 0.0 127.9 0.0 -4,-6 0.0019 2 9.3 MINOR ENSMUSG00000054226 Tprkb ENSMUST00000149026 ENSMUSP00000117259 TRANSLATION protein_coding stop - 3 132.0 0.0 3.58 0.0 117.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000037621 Atoh8 ENSMUST00000042646 ENSMUSP00000036981 TRANSLATION protein_coding - CCDS39511.1 1 322.0 0.0 2.5 0.4 53.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037621 Atoh8 ENSMUST00000206553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037621 Atoh8 ENSMUST00000206425 ENSMUSP00000145790 TRANSLATION nonsense_mediated_decay start - 1 114.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000023191 P3h3 ENSMUST00000135127 ENSMUSP00000116338 TRANSLATION nonsense_mediated_decay - - 2 337.0 0.0 1.465 0.0 0.0 0.0 4,-1 0.0018 4 -2.0 MINOR ENSMUSG00000023191 P3h3 ENSMUST00000129225 - NO_TRANSLATION retained_intron ENSMUSG00000023191 P3h3 ENSMUST00000149870 - NO_TRANSLATION retained_intron ENSMUSG00000023191 P3h3 ENSMUST00000147296 - NO_TRANSLATION retained_intron ENSMUSG00000023191 P3h3 ENSMUST00000135546 - NO_TRANSLATION retained_intron ENSMUSG00000023191 P3h3 ENSMUST00000023958 ENSMUSP00000023958 TRANSLATION protein_coding - CCDS20533.1 1 732.0 3.0 2.831 0.0 35.1 0.0 4,-1 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000023191 P3h3 ENSMUST00000126987 - NO_TRANSLATION retained_intron ENSMUSG00000053297 AI854703 ENSMUST00000095938 ENSMUSP00000145982 TRANSLATION protein_coding - - 2 203.0 20.0 0.904 7.9 123.7 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000053297 AI854703 ENSMUST00000203088 ENSMUSP00000145635 TRANSLATION protein_coding stop - 2 102.0 9.0 0.64 0.0 57.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053297 AI854703 ENSMUST00000154570 ENSMUSP00000145812 TRANSLATION protein_coding - - 2 203.0 20.0 0.904 7.9 123.7 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000053297 AI854703 ENSMUST00000204958 ENSMUSP00000145967 TRANSLATION protein_coding stop - 2 102.0 9.0 0.64 0.0 57.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025701 Alox5 ENSMUST00000026795 ENSMUSP00000026795 TRANSLATION protein_coding - CCDS20452.1 1 674.0 8.0 14.58 34.3 90.3 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025701 Alox5 ENSMUST00000167447 - NO_TRANSLATION retained_intron ENSMUSG00000025701 Alox5 ENSMUST00000167585 - NO_TRANSLATION retained_intron ENSMUSG00000025701 Alox5 ENSMUST00000167174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025701 Alox5 ENSMUST00000164547 ENSMUSP00000130780 TRANSLATION protein_coding - - 5 617.0 7.0 13.58 2.0 90.3 0.0 -4,-6 0.1456 13 15.372 MINOR ENSMUSG00000025701 Alox5 ENSMUST00000203722 ENSMUSP00000145367 TRANSLATION nonsense_mediated_decay - - 5 434.0 4.0 8.83 0.0 90.3 0.0 -4,-6 0.0094 10 -2.0 MINOR ENSMUSG00000025701 Alox5 ENSMUST00000169625 - NO_TRANSLATION retained_intron ENSMUSG00000025701 Alox5 ENSMUST00000170186 ENSMUSP00000130424 TRANSLATION protein_coding - - 5 642.0 8.0 13.58 3.2 90.3 0.0 -4,-6 0.1589 12 16.266 MINOR ENSMUSG00000029755 Dlx5 ENSMUST00000142635 ENSMUSP00000138264 TRANSLATION protein_coding - CCDS59691.1 1 146.0 0.0 0.0 2.5 91.1 0.0 -4,-2 0.0457 1 1.982 MINOR ENSMUSG00000029755 Dlx5 ENSMUST00000204014 - NO_TRANSLATION retained_intron ENSMUSG00000029755 Dlx5 ENSMUST00000052609 ENSMUSP00000052559 TRANSLATION protein_coding - CCDS19905.1 1 289.0 0.0 1.93 24.0 162.4 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030246 Ldhb ENSMUST00000239397 ENSMUSP00000159362 TRANSLATION protein_coding - CCDS20684.1 - 334.0 25.0 8.5 36.9 252.6 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000030246 Ldhb ENSMUST00000204433 ENSMUSP00000145261 TRANSLATION protein_coding start - 3 193.0 17.0 4.55 0.0 132.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030246 Ldhb ENSMUST00000032373 ENSMUSP00000032373 TRANSLATION protein_coding - CCDS20684.1 1 334.0 25.0 8.5 36.9 252.6 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000030246 Ldhb ENSMUST00000239395 ENSMUSP00000159378 TRANSLATION protein_coding - - - 341.0 25.0 8.5 2.2 252.6 0.0 -4,-5 0.2579 - -2.0 MINOR ENSMUSG00000030246 Ldhb ENSMUST00000134191 ENSMUSP00000116014 TRANSLATION protein_coding stop - 2 198.0 22.0 5.0 0.0 169.9 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000030246 Ldhb ENSMUST00000130817 ENSMUSP00000145467 TRANSLATION protein_coding start - 3 32.0 3.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063063 Ctnna2 ENSMUST00000159626 ENSMUSP00000124376 TRANSLATION protein_coding - CCDS20250.1 1 953.0 0.0 15.85 19.3 1045.4 0.0 -4,-6 0.7066 28 10.346 MINOR ENSMUSG00000063063 Ctnna2 ENSMUST00000075340 ENSMUSP00000074809 TRANSLATION protein_coding - CCDS39521.1 5 905.0 0.0 16.85 36.1 1074.4 0.0 -4,-6 1.0 29 16.0 PRINCIPAL:1 ENSMUSG00000063063 Ctnna2 ENSMUST00000162991 - NO_TRANSLATION retained_intron ENSMUSG00000063063 Ctnna2 ENSMUST00000160252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063063 Ctnna2 ENSMUST00000162273 ENSMUSP00000124689 TRANSLATION protein_coding - - 1 356.0 0.0 6.0 2.2 348.3 0.0 -4,-6 0.0515 11 0.136 MINOR ENSMUSG00000063063 Ctnna2 ENSMUST00000204527 ENSMUSP00000144890 TRANSLATION nonsense_mediated_decay start - 5 243.0 0.0 4.75 0.0 317.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000063063 Ctnna2 ENSMUST00000160894 ENSMUSP00000124764 TRANSLATION protein_coding - - 1 966.0 0.0 15.85 0.1 1045.3 0.0 -4,-5 0.0831 28 8.256 MINOR ENSMUSG00000063063 Ctnna2 ENSMUST00000161846 ENSMUSP00000123714 TRANSLATION protein_coding - - 1 918.0 0.0 16.85 0.1 1074.4 0.0 -4,-5 0.2045 29 12.0 MINOR ENSMUSG00000038253 Hoxa5 ENSMUST00000048794 ENSMUSP00000039012 TRANSLATION protein_coding - CCDS20143.1 1 270.0 0.0 1.0 12.9 76.5 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000089728 Clec2f ENSMUST00000204981 ENSMUSP00000158978 TRANSLATION protein_coding - - 1 208.0 0.0 3.4 0.1 54.9 0.0 -4,-6 0.7336 - 12.0 PRINCIPAL:1 ENSMUSG00000051956 Rnf133 ENSMUST00000063548 ENSMUSP00000066906 TRANSLATION protein_coding - CCDS19938.1 1 339.0 8.0 2.0 0.0 77.3 0.0 -2,-5 0.078 - 15.918 MINOR ENSMUSG00000051956 Rnf133 ENSMUST00000115354 ENSMUSP00000111011 TRANSLATION protein_coding - - - 382.0 8.0 3.0 0.4 78.4 0.0 -2,-5 0.7489 - 18.0 PRINCIPAL:1 ENSMUSG00000030339 Ltbr ENSMUST00000160901 - NO_TRANSLATION retained_intron ENSMUSG00000030339 Ltbr ENSMUST00000032489 ENSMUSP00000032489 TRANSLATION protein_coding - CCDS20549.1 1 415.0 0.0 4.23 2.0 89.9 0.0 1,-3 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000030339 Ltbr ENSMUST00000161891 - NO_TRANSLATION retained_intron ENSMUSG00000056755 Grm7 ENSMUST00000174018 ENSMUSP00000134635 TRANSLATION nonsense_mediated_decay - - 1 188.0 10.0 1.0 0.0 76.7 0.0 3,-1 0.0 4 -2.0 MINOR ENSMUSG00000056755 Grm7 ENSMUST00000174310 ENSMUSP00000133897 TRANSLATION protein_coding start - 3 75.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000056755 Grm7 ENSMUST00000173001 ENSMUSP00000134233 TRANSLATION protein_coding start - 5 74.0 0.0 0.33 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000056755 Grm7 ENSMUST00000071076 ENSMUSP00000064404 TRANSLATION protein_coding - CCDS85110.1 5 922.0 20.0 7.768 9.6 607.1 6.0 3,-1 0.9481 17 17.0 ALTERNATIVE:1 ENSMUSG00000056755 Grm7 ENSMUST00000172951 ENSMUSP00000133957 TRANSLATION protein_coding - CCDS39587.1 1 915.0 20.0 7.768 9.6 607.1 6.0 3,-1 1.0 17 17.0 PRINCIPAL:4 ENSMUSG00000003154 Foxj2 ENSMUST00000203075 ENSMUSP00000145438 TRANSLATION protein_coding stop - 3 205.0 0.0 1.95 0.0 126.6 0.0 -4,-5 0.0197 3 -2.0 MINOR ENSMUSG00000003154 Foxj2 ENSMUST00000003238 ENSMUSP00000003238 TRANSLATION protein_coding - CCDS20503.1 1 565.0 0.0 1.95 8.0 126.6 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000071226 Cecr2 ENSMUST00000204732 - NO_TRANSLATION retained_intron ENSMUSG00000071226 Cecr2 ENSMUST00000112686 ENSMUSP00000108306 TRANSLATION protein_coding - CCDS51890.1 5 1425.0 0.0 3.35 0.0 70.3 0.0 -4,-5 0.8837 - 8.0 ALTERNATIVE:2 ENSMUSG00000071226 Cecr2 ENSMUST00000100993 ENSMUSP00000098556 TRANSLATION protein_coding - - 5 1453.0 0.0 3.35 0.0 70.3 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:4 ENSMUSG00000071226 Cecr2 ENSMUST00000135109 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071226 Cecr2 ENSMUST00000129803 ENSMUSP00000118542 TRANSLATION protein_coding start/stop - 5 234.0 0.0 2.15 0.0 29.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071226 Cecr2 ENSMUST00000124634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071226 Cecr2 ENSMUST00000143563 ENSMUSP00000116993 TRANSLATION protein_coding start/stop - 2 357.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 - -2.0 MINOR ENSMUSG00000071226 Cecr2 ENSMUST00000148346 - NO_TRANSLATION retained_intron ENSMUSG00000030055 Rab43 ENSMUST00000204923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030055 Rab43 ENSMUST00000078647 ENSMUSP00000077716 TRANSLATION protein_coding - CCDS20329.1 1 210.0 24.0 3.0 6.4 188.3 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000030055 Rab43 ENSMUST00000203294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030055 Rab43 ENSMUST00000032134 ENSMUSP00000032134 TRANSLATION protein_coding - CCDS20330.1 1 156.0 13.0 2.0 0.0 124.7 0.0 -3,-6 0.0032 6 6.186 MINOR ENSMUSG00000030055 Rab43 ENSMUST00000125377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030055 Rab43 ENSMUST00000123216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030055 Rab43 ENSMUST00000032135 ENSMUSP00000032135 TRANSLATION protein_coding - - 1 150.0 19.0 2.0 0.0 137.8 0.0 -4,-5 0.0 4 9.636 MINOR ENSMUSG00000029736 Nobox ENSMUST00000031749 ENSMUSP00000031749 TRANSLATION protein_coding - CCDS20093.1 1 527.0 0.0 2.3 0.1 73.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029736 Nobox ENSMUST00000183706 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029736 Nobox ENSMUST00000172554 ENSMUSP00000133353 TRANSLATION protein_coding start - 3 327.0 0.0 2.3 0.0 73.1 0.0 -4,-5 0.0408 - -2.0 MINOR ENSMUSG00000029920 Smarcad1 ENSMUST00000205092 - NO_TRANSLATION retained_intron ENSMUSG00000029920 Smarcad1 ENSMUST00000204801 ENSMUSP00000145195 TRANSLATION protein_coding stop - 2 134.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029920 Smarcad1 ENSMUST00000203756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029920 Smarcad1 ENSMUST00000203104 - NO_TRANSLATION retained_intron ENSMUSG00000029920 Smarcad1 ENSMUST00000031984 ENSMUSP00000031984 TRANSLATION protein_coding - CCDS20204.1 1 1021.0 5.0 11.18 7.3 266.3 0.0 -4,-6 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000029920 Smarcad1 ENSMUST00000204165 - NO_TRANSLATION retained_intron ENSMUSG00000029920 Smarcad1 ENSMUST00000204111 - NO_TRANSLATION retained_intron ENSMUSG00000029920 Smarcad1 ENSMUST00000204114 ENSMUSP00000145228 TRANSLATION nonsense_mediated_decay - - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029920 Smarcad1 ENSMUST00000204620 ENSMUSP00000144767 TRANSLATION nonsense_mediated_decay - - 1 123.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029920 Smarcad1 ENSMUST00000204696 ENSMUSP00000144776 TRANSLATION protein_coding - - 1 73.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000029920 Smarcad1 ENSMUST00000203411 ENSMUSP00000145262 TRANSLATION nonsense_mediated_decay start - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029920 Smarcad1 ENSMUST00000205118 ENSMUSP00000145340 TRANSLATION protein_coding - - 2 73.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000029920 Smarcad1 ENSMUST00000204420 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029920 Smarcad1 ENSMUST00000204170 - NO_TRANSLATION retained_intron ENSMUSG00000029920 Smarcad1 ENSMUST00000204955 ENSMUSP00000145152 TRANSLATION nonsense_mediated_decay - - 3 73.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000115792 Vmn1r16 ENSMUST00000228356 ENSMUSP00000154643 TRANSLATION protein_coding - - - 286.0 0.0 0.0 0.0 164.9 5.0 -2,-5 0.0155 - 4.578 MINOR ENSMUSG00000115792 Vmn1r16 ENSMUST00000227283 ENSMUSP00000154566 TRANSLATION protein_coding - CCDS20179.1 - 303.0 0.0 0.0 0.1 188.6 6.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115792 Vmn1r16 ENSMUST00000227168 ENSMUSP00000154001 TRANSLATION protein_coding - CCDS20179.1 - 303.0 0.0 0.0 0.1 188.6 6.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000076484 Trbj1-2 ENSMUST00000103285 ENSMUSP00000141699 TRANSLATION TR_J_gene start/stop - - 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000038279 Nop2 ENSMUST00000044200 ENSMUSP00000047123 TRANSLATION protein_coding - CCDS51912.1 1 794.0 15.0 7.6 0.0 347.2 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000038279 Nop2 ENSMUST00000204185 ENSMUSP00000145333 TRANSLATION protein_coding stop - 3 133.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030307 Slc6a11 ENSMUST00000203105 - NO_TRANSLATION retained_intron ENSMUSG00000030307 Slc6a11 ENSMUST00000032451 ENSMUSP00000032451 TRANSLATION protein_coding - CCDS39597.1 1 627.0 0.0 13.6 7.8 823.4 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000030095 Tmem43 ENSMUST00000032183 ENSMUSP00000032183 TRANSLATION protein_coding - CCDS20368.1 1 400.0 0.0 9.75 24.3 284.0 0.0 -4,-7 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000030095 Tmem43 ENSMUST00000144246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030095 Tmem43 ENSMUST00000205954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030095 Tmem43 ENSMUST00000140246 - NO_TRANSLATION retained_intron ENSMUSG00000030095 Tmem43 ENSMUST00000153179 - NO_TRANSLATION retained_intron ENSMUSG00000029917 Qrfprl ENSMUST00000170608 ENSMUSP00000130225 TRANSLATION protein_coding - CCDS20206.2 1 416.0 0.0 4.53 0.4 187.7 9.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029917 Qrfprl ENSMUST00000133352 ENSMUSP00000122416 TRANSLATION protein_coding stop - 5 161.0 0.0 1.35 0.0 52.5 5.0 -4,-2 0.0059 - -2.0 MINOR ENSMUSG00000029917 Qrfprl ENSMUST00000136016 ENSMUSP00000121875 TRANSLATION protein_coding start/stop - 1 116.0 0.0 1.53 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000071158 Klrh1 ENSMUST00000118532 ENSMUSP00000113766 TRANSLATION protein_coding - - 1 180.0 3.0 1.975 0.0 41.4 1.0 -4,-5 0.0027 - 12.18 MINOR ENSMUSG00000071158 Klrh1 ENSMUST00000095409 ENSMUSP00000093058 TRANSLATION protein_coding - CCDS20595.1 1 223.0 4.0 2.375 0.3 59.3 1.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000107906 Eif4a3l2 ENSMUST00000122096 ENSMUSP00000145194 TRANSLATION protein_coding - - - 411.0 13.0 1.0 9.1 248.1 0.0 -4,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000107539 Gm44790 ENSMUST00000204137 ENSMUSP00000145002 TRANSLATION nonsense_mediated_decay,RT start - 3 101.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000029823 Luc7l2 ENSMUST00000162718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029823 Luc7l2 ENSMUST00000161227 ENSMUSP00000125111 TRANSLATION protein_coding - CCDS80524.1 1 339.0 6.0 4.7815 8.4 198.0 0.0 -4,-5 0.4456 4 14.516 MINOR ENSMUSG00000029823 Luc7l2 ENSMUST00000161538 ENSMUSP00000124010 TRANSLATION protein_coding - CCDS51751.1 1 325.0 8.0 4.2105 0.0 272.2 0.0 -4,-7 0.058 5 16.86 MINOR ENSMUSG00000029823 Luc7l2 ENSMUST00000162386 ENSMUSP00000125573 TRANSLATION nonsense_mediated_decay - - 1 80.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029823 Luc7l2 ENSMUST00000162530 - NO_TRANSLATION retained_intron ENSMUSG00000029823 Luc7l2 ENSMUST00000160511 ENSMUSP00000125527 TRANSLATION nonsense_mediated_decay - - 1 99.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029823 Luc7l2 ENSMUST00000160922 - NO_TRANSLATION retained_intron ENSMUSG00000029823 Luc7l2 ENSMUST00000160582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029823 Luc7l2 ENSMUST00000160430 - NO_TRANSLATION retained_intron ENSMUSG00000029823 Luc7l2 ENSMUST00000159936 ENSMUSP00000123970 TRANSLATION nonsense_mediated_decay - - 1 80.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029823 Luc7l2 ENSMUST00000163047 ENSMUSP00000125394 TRANSLATION protein_coding - CCDS80525.1 1 272.0 6.0 4.4515 0.0 198.0 0.0 -4,-5 0.0048 3 11.388 MINOR ENSMUSG00000029823 Luc7l2 ENSMUST00000057692 ENSMUSP00000055254 TRANSLATION protein_coding - CCDS20015.1 1 392.0 8.0 4.5405 13.0 272.2 0.0 -4,-7 1.0 6 21.52 PRINCIPAL:1 ENSMUSG00000029823 Luc7l2 ENSMUST00000163012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020440 Arf5 ENSMUST00000202028 - NO_TRANSLATION retained_intron ENSMUSG00000020440 Arf5 ENSMUST00000020717 ENSMUSP00000020717 TRANSLATION protein_coding - CCDS19952.1 1 180.0 19.0 5.0 36.9 255.1 0.0 -4,-1 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000030180 Kdm5a ENSMUST00000203373 ENSMUSP00000144720 TRANSLATION protein_coding start/stop - 3 153.0 5.0 2.066 0.0 34.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030180 Kdm5a ENSMUST00000135802 ENSMUSP00000145021 TRANSLATION nonsense_mediated_decay - - 1 814.0 19.0 11.166 0.0 438.8 0.0 -4,-6 0.0493 10 -2.0 MINOR ENSMUSG00000030180 Kdm5a ENSMUST00000124847 - NO_TRANSLATION retained_intron ENSMUSG00000030180 Kdm5a ENSMUST00000152293 - NO_TRANSLATION retained_intron ENSMUSG00000030180 Kdm5a ENSMUST00000142791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030180 Kdm5a ENSMUST00000132599 - NO_TRANSLATION retained_intron ENSMUSG00000030180 Kdm5a ENSMUST00000132009 ENSMUSP00000145375 TRANSLATION nonsense_mediated_decay - - 1 621.0 19.0 7.88134 0.0 325.2 0.0 -4,-6 0.0006 5 -2.0 MINOR ENSMUSG00000030180 Kdm5a ENSMUST00000124525 - NO_TRANSLATION retained_intron ENSMUSG00000030180 Kdm5a ENSMUST00000005108 ENSMUSP00000005108 TRANSLATION protein_coding - CCDS51889.1 5 1690.0 19.0 11.166 12.0 757.5 0.0 -4,-6 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000076480 Trbv29 ENSMUST00000103281 ENSMUSP00000100097 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.0 0.0 41.5 0.0 1,-3 0.8254 - -2.0 PRINCIPAL:1 ENSMUSG00000059201 Lep ENSMUST00000169505 ENSMUSP00000130087 TRANSLATION protein_coding stop - 3 98.0 0.0 0.4 0.0 125.7 0.0 4,-1 0.0011 2 -2.0 MINOR ENSMUSG00000059201 Lep ENSMUST00000069789 ENSMUSP00000067046 TRANSLATION protein_coding - CCDS19955.1 1 167.0 0.0 1.4 3.8 227.2 0.0 4,-1 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000076508 Igkv17-127 ENSMUST00000200586 ENSMUSP00000142437 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.1 0.0 46.1 0.0 4,-1 0.8211 - -2.0 PRINCIPAL:5 ENSMUSG00000076508 Igkv17-127 ENSMUST00000103309 ENSMUSP00000100110 TRANSLATION IG_V_gene stop - - 113.0 0.0 1.1 0.0 46.1 0.0 2,-2 0.1844 - -2.0 ALTERNATIVE:2 ENSMUSG00000038527 C1rl ENSMUST00000049124 ENSMUSP00000042883 TRANSLATION protein_coding - CCDS20520.1 1 482.0 5.0 2.03 2.1 196.0 0.0 -3,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000038028 Tigar ENSMUST00000039913 ENSMUSP00000048643 TRANSLATION protein_coding - CCDS20563.1 1 269.0 8.0 3.78 8.4 0.0 0.0 -4,-6 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000038028 Tigar ENSMUST00000200988 ENSMUSP00000144435 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.33 0.0 0.0 0.0 -4,0 0.0127 - -2.0 MINOR ENSMUSG00000030091 Nup210 ENSMUST00000142951 ENSMUSP00000120098 TRANSLATION protein_coding start - 1 1076.0 0.0 0.0 0.0 39.2 1.0 -4,-5 0.2305 18 -2.0 MINOR ENSMUSG00000030091 Nup210 ENSMUST00000123340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030091 Nup210 ENSMUST00000151437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030091 Nup210 ENSMUST00000203434 - NO_TRANSLATION retained_intron ENSMUSG00000030091 Nup210 ENSMUST00000139051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030091 Nup210 ENSMUST00000032179 ENSMUSP00000032179 TRANSLATION protein_coding - CCDS39565.1 1 1886.0 0.0 0.0 1.5 39.2 1.0 4,-1 1.0 36 3.0 PRINCIPAL:2 ENSMUSG00000030091 Nup210 ENSMUST00000141952 - NO_TRANSLATION retained_intron ENSMUSG00000030091 Nup210 ENSMUST00000153350 - NO_TRANSLATION retained_intron ENSMUSG00000030091 Nup210 ENSMUST00000204740 - NO_TRANSLATION retained_intron ENSMUSG00000030091 Nup210 ENSMUST00000113509 ENSMUSP00000109137 TRANSLATION protein_coding - - 1 1842.0 0.0 0.0 0.0 39.2 1.0 4,-1 0.3716 34 2.0 ALTERNATIVE:2 ENSMUSG00000030091 Nup210 ENSMUST00000148397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034192 Lsm3 ENSMUST00000126253 - NO_TRANSLATION retained_intron ENSMUSG00000034192 Lsm3 ENSMUST00000206947 ENSMUSP00000145568 TRANSLATION protein_coding - CCDS20369.1 1 102.0 5.0 2.915 36.9 71.3 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000034192 Lsm3 ENSMUST00000205609 - NO_TRANSLATION retained_intron ENSMUSG00000034192 Lsm3 ENSMUST00000040607 ENSMUSP00000044178 TRANSLATION protein_coding - CCDS20369.1 1 102.0 5.0 2.915 36.9 71.3 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000034192 Lsm3 ENSMUST00000123569 - NO_TRANSLATION retained_intron ENSMUSG00000035245 Eogt ENSMUST00000113387 ENSMUSP00000109014 TRANSLATION protein_coding - - 5 61.0 0.0 0.0 0.0 0.0 0.0 -2,-3 0.0219 - 0.0 MINOR ENSMUSG00000035245 Eogt ENSMUST00000054344 ENSMUSP00000061610 TRANSLATION protein_coding - CCDS20383.1 1 527.0 0.0 14.83 13.2 0.0 0.0 -1,-3 1.0 15 10.0 PRINCIPAL:1 ENSMUSG00000035245 Eogt ENSMUST00000136575 ENSMUSP00000117541 TRANSLATION protein_coding stop - 5 148.0 0.0 3.83 0.0 0.0 0.0 -1,-3 0.0165 3 -2.0 MINOR ENSMUSG00000035245 Eogt ENSMUST00000204331 ENSMUSP00000145303 TRANSLATION protein_coding stop - 3 67.0 0.0 1.25 0.0 0.0 0.0 -1,-3 0.0181 1 -2.0 MINOR ENSMUSG00000035245 Eogt ENSMUST00000130562 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035245 Eogt ENSMUST00000135187 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035245 Eogt ENSMUST00000142116 ENSMUSP00000116362 TRANSLATION protein_coding stop - 2 49.0 0.0 0.75 0.0 0.0 0.0 -2,-3 0.0164 1 -2.0 MINOR ENSMUSG00000035245 Eogt ENSMUST00000142553 ENSMUSP00000115101 TRANSLATION protein_coding stop - 3 90.0 0.0 2.0 0.0 0.0 0.0 -1,-3 0.0166 2 -2.0 MINOR ENSMUSG00000029913 Prdm5 ENSMUST00000205168 - NO_TRANSLATION retained_intron ENSMUSG00000029913 Prdm5 ENSMUST00000081219 ENSMUSP00000079979 TRANSLATION protein_coding - - 1 221.0 19.0 4.2 0.0 112.7 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000029913 Prdm5 ENSMUST00000031976 ENSMUSP00000031976 TRANSLATION protein_coding - CCDS20208.1 1 599.0 57.0 9.25 9.8 275.6 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000029913 Prdm5 ENSMUST00000031973 ENSMUSP00000031973 TRANSLATION protein_coding - CCDS85059.1 1 415.0 43.0 7.8 0.0 207.9 0.0 -4,-7 0.0087 - 5.04 MINOR ENSMUSG00000029913 Prdm5 ENSMUST00000173538 - NO_TRANSLATION retained_intron ENSMUSG00000029913 Prdm5 ENSMUST00000172638 ENSMUSP00000133423 TRANSLATION protein_coding - - 5 501.0 42.0 6.45 3.1 188.6 0.0 -4,-7 0.0864 - 1.899 MINOR ENSMUSG00000029913 Prdm5 ENSMUST00000205155 - NO_TRANSLATION retained_intron ENSMUSG00000052861 Dnah6 ENSMUST00000114040 ENSMUSP00000109674 TRANSLATION protein_coding - - 5 4092.0 60.0 44.44 0.0 2580.0 0.0 -4,-5 0.3901 14 11.88 MINOR ENSMUSG00000052861 Dnah6 ENSMUST00000204053 ENSMUSP00000144791 TRANSLATION protein_coding - CCDS51813.1 5 4144.0 63.0 45.44 0.4 2615.4 0.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000052861 Dnah6 ENSMUST00000064948 ENSMUSP00000068758 TRANSLATION protein_coding - CCDS51813.1 5 4144.0 63.0 45.44 0.4 2615.4 0.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000052861 Dnah6 ENSMUST00000114038 - NO_TRANSLATION retained_intron ENSMUSG00000000938 Hoxa10 ENSMUST00000125581 ENSMUSP00000120276 TRANSLATION protein_coding - CCDS20147.2 1 416.0 0.0 1.0 0.4 75.6 0.0 -4,-7 0.4211 5 8.0 ALTERNATIVE:2 ENSMUSG00000000938 Hoxa10 ENSMUST00000121043 ENSMUSP00000112872 TRANSLATION protein_coding - CCDS51775.1 2 94.0 0.0 1.0 3.3 75.6 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:2 ENSMUSG00000000938 Hoxa10 ENSMUST00000142611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000938 Hoxa10 ENSMUST00000126402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030199 Etv6 ENSMUST00000111963 ENSMUSP00000107594 TRANSLATION protein_coding - - 1 396.0 0.0 4.35 0.0 137.7 0.0 -4,-6 0.0 2 5.844 MINOR ENSMUSG00000030199 Etv6 ENSMUST00000081028 ENSMUSP00000079818 TRANSLATION protein_coding - CCDS39677.1 2 485.0 0.0 5.55 0.0 200.3 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000030199 Etv6 ENSMUST00000164648 ENSMUSP00000130761 TRANSLATION protein_coding stop - 5 158.0 0.0 2.55 0.0 96.5 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000030199 Etv6 ENSMUST00000169529 - NO_TRANSLATION retained_intron ENSMUSG00000030199 Etv6 ENSMUST00000145869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076474 Trbv17 ENSMUST00000103275 ENSMUSP00000100091 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.0 0.0 43.4 0.0 2,-2 0.8237 - -2.0 PRINCIPAL:1 ENSMUSG00000030255 Sspn ENSMUST00000111702 ENSMUSP00000107331 TRANSLATION protein_coding - CCDS80637.1 2 140.0 0.0 0.0 7.5 51.4 4.0 -3,-6 0.9742 3 4.85 MINOR ENSMUSG00000030255 Sspn ENSMUST00000032383 ENSMUSP00000032383 TRANSLATION protein_coding - CCDS20698.1 1 216.0 0.0 0.0 0.1 103.9 6.0 -4,-7 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000030255 Sspn ENSMUST00000111701 ENSMUSP00000107330 TRANSLATION protein_coding - CCDS80637.1 3 140.0 0.0 0.0 7.5 51.4 4.0 -3,-6 0.9742 3 4.85 MINOR ENSMUSG00000072875 Gpr27 ENSMUST00000101122 ENSMUSP00000098680 TRANSLATION protein_coding - CCDS20387.1 - 379.0 0.0 0.2 5.8 80.9 0.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000076534 Igkv12-89 ENSMUST00000199143 ENSMUSP00000143728 TRANSLATION IG_V_gene stop - - 112.0 0.0 1.0 0.0 54.6 0.0 4,-1 0.8257 1 -2.0 PRINCIPAL:1 ENSMUSG00000060032 H2aj ENSMUST00000203982 ENSMUSP00000144974 TRANSLATION protein_coding - - 3 126.0 0.0 1.0 22.7 133.2 0.0 -4,-7 0.8505 - 11.632 ALTERNATIVE:1 ENSMUSG00000060032 H2aj ENSMUST00000074556 ENSMUSP00000074142 TRANSLATION protein_coding - CCDS20654.1 - 129.0 0.0 1.0 24.9 132.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000000441 Raf1 ENSMUST00000203759 ENSMUSP00000145520 TRANSLATION protein_coding start - 5 96.0 3.0 1.33 0.0 31.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000441 Raf1 ENSMUST00000000451 ENSMUSP00000000451 TRANSLATION protein_coding - CCDS20441.1 1 648.0 16.0 11.322 24.1 356.4 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000000441 Raf1 ENSMUST00000203142 ENSMUSP00000144937 TRANSLATION nonsense_mediated_decay start - 3 118.0 6.0 2.778 0.0 84.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000000441 Raf1 ENSMUST00000127503 - NO_TRANSLATION retained_intron ENSMUSG00000000441 Raf1 ENSMUST00000147979 ENSMUSP00000115424 TRANSLATION protein_coding start/stop - 3 205.0 8.0 1.542 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000000441 Raf1 ENSMUST00000112949 ENSMUSP00000108571 TRANSLATION protein_coding - CCDS20441.1 1 648.0 16.0 11.322 24.1 356.4 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000000441 Raf1 ENSMUST00000130528 - NO_TRANSLATION retained_intron ENSMUSG00000000441 Raf1 ENSMUST00000203826 - NO_TRANSLATION retained_intron ENSMUSG00000000441 Raf1 ENSMUST00000124553 - NO_TRANSLATION retained_intron ENSMUSG00000000441 Raf1 ENSMUST00000204512 - NO_TRANSLATION retained_intron ENSMUSG00000000441 Raf1 ENSMUST00000203276 - NO_TRANSLATION retained_intron ENSMUSG00000029925 Tbxas1 ENSMUST00000162521 ENSMUSP00000125406 TRANSLATION protein_coding - - 1 124.0 0.0 1.48 0.0 0.0 0.0 -2,-5 0.0 1 0.0 MINOR ENSMUSG00000029925 Tbxas1 ENSMUST00000159226 - NO_TRANSLATION retained_intron ENSMUSG00000029925 Tbxas1 ENSMUST00000160963 ENSMUSP00000124640 TRANSLATION protein_coding start/stop - 3 134.0 5.0 2.55 0.0 52.3 0.0 -4,-1 0.0 6 -2.0 MINOR ENSMUSG00000029925 Tbxas1 ENSMUST00000003017 ENSMUSP00000003017 TRANSLATION protein_coding - CCDS20018.1 1 533.0 30.0 7.9 16.0 311.8 0.0 -2,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000029925 Tbxas1 ENSMUST00000161360 - NO_TRANSLATION retained_intron ENSMUSG00000029925 Tbxas1 ENSMUST00000162656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029925 Tbxas1 ENSMUST00000161781 - NO_TRANSLATION retained_intron ENSMUSG00000030226 Lmo3 ENSMUST00000162185 ENSMUSP00000124105 TRANSLATION protein_coding stop - 3 108.0 12.0 2.83 0.0 91.2 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000030226 Lmo3 ENSMUST00000163024 ENSMUSP00000125589 TRANSLATION protein_coding - CCDS20669.1 1 145.0 16.0 3.83 24.4 112.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000030226 Lmo3 ENSMUST00000160050 ENSMUSP00000124722 TRANSLATION nonsense_mediated_decay - - 5 60.0 7.0 1.066 0.0 41.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030226 Lmo3 ENSMUST00000203435 ENSMUSP00000145048 TRANSLATION protein_coding - CCDS20669.1 5 145.0 16.0 3.83 24.4 112.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000030226 Lmo3 ENSMUST00000162932 ENSMUSP00000124514 TRANSLATION protein_coding stop - 2 68.0 8.0 1.5 0.0 55.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030226 Lmo3 ENSMUST00000163065 ENSMUSP00000124762 TRANSLATION protein_coding - - 3 156.0 16.0 3.83 22.2 112.6 0.0 -4,-5 0.7966 - 17.624 ALTERNATIVE:1 ENSMUSG00000030226 Lmo3 ENSMUST00000161450 ENSMUSP00000124862 TRANSLATION protein_coding - CCDS20669.1 5 145.0 16.0 3.83 24.4 112.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000030226 Lmo3 ENSMUST00000162772 ENSMUSP00000125335 TRANSLATION protein_coding - CCDS20669.1 1 145.0 16.0 3.83 24.4 112.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000052656 Rnf103 ENSMUST00000150069 - NO_TRANSLATION retained_intron ENSMUSG00000052656 Rnf103 ENSMUST00000064637 ENSMUSP00000066324 TRANSLATION protein_coding - CCDS39508.1 1 683.0 8.0 0.0 2.0 40.2 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000052656 Rnf103 ENSMUST00000114178 ENSMUSP00000109816 TRANSLATION protein_coding - - 1 185.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0018 - 0.0 MINOR ENSMUSG00000058486 Wdr91 ENSMUST00000134830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058486 Wdr91 ENSMUST00000145765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058486 Wdr91 ENSMUST00000133336 ENSMUSP00000120805 TRANSLATION protein_coding stop - 3 138.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000058486 Wdr91 ENSMUST00000149448 ENSMUSP00000120164 TRANSLATION protein_coding stop - 5 196.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000058486 Wdr91 ENSMUST00000152488 ENSMUSP00000117396 TRANSLATION protein_coding stop - 5 58.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000058486 Wdr91 ENSMUST00000146968 ENSMUSP00000138406 TRANSLATION nonsense_mediated_decay - - 5 604.0 0.0 3.7 0.0 16.2 0.0 -4,-5 0.0124 14 -2.0 MINOR ENSMUSG00000058486 Wdr91 ENSMUST00000081214 ENSMUSP00000079974 TRANSLATION protein_coding - CCDS39457.1 1 748.0 0.0 7.0 10.7 18.0 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000058486 Wdr91 ENSMUST00000201569 - NO_TRANSLATION retained_intron ENSMUSG00000040552 C3ar1 ENSMUST00000042081 ENSMUSP00000048092 TRANSLATION protein_coding - CCDS20504.1 1 477.0 0.0 0.2 1.3 140.3 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030237 Slco1a4 ENSMUST00000204676 - NO_TRANSLATION retained_intron ENSMUSG00000030237 Slco1a4 ENSMUST00000163678 ENSMUSP00000126767 TRANSLATION protein_coding stop - 5 139.0 0.0 0.0 0.0 127.6 5.0 -4,-7 0.0024 1 -2.0 MINOR ENSMUSG00000030237 Slco1a4 ENSMUST00000032364 ENSMUSP00000032364 TRANSLATION protein_coding - CCDS39690.1 2 670.0 0.0 0.0 5.1 607.8 13.0 -4,-7 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000030237 Slco1a4 ENSMUST00000165990 ENSMUSP00000130746 TRANSLATION protein_coding - CCDS39690.1 1 670.0 0.0 0.0 5.1 607.8 13.0 -4,-7 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000029821 Gsdme ENSMUST00000167893 ENSMUSP00000132062 TRANSLATION protein_coding stop - 2 123.0 0.0 0.66 0.0 175.0 0.0 -4,-5 0.0004 3 -2.0 MINOR ENSMUSG00000029821 Gsdme ENSMUST00000031845 ENSMUSP00000031845 TRANSLATION protein_coding - CCDS20130.1 1 512.0 0.0 1.07 0.1 544.7 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000029821 Gsdme ENSMUST00000204417 - NO_TRANSLATION retained_intron ENSMUSG00000029821 Gsdme ENSMUST00000204700 - NO_TRANSLATION retained_intron ENSMUSG00000029821 Gsdme ENSMUST00000165099 ENSMUSP00000130522 TRANSLATION protein_coding - - 1 424.0 0.0 1.07 0.0 497.2 0.0 -4,-5 0.0681 12 9.15 MINOR ENSMUSG00000029821 Gsdme ENSMUST00000170142 ENSMUSP00000126759 TRANSLATION protein_coding - CCDS20130.1 1 512.0 0.0 1.07 0.1 544.7 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000029821 Gsdme ENSMUST00000101405 ENSMUSP00000098952 TRANSLATION protein_coding - - 1 399.0 0.0 1.07 0.0 461.0 0.0 -4,-5 0.049 12 6.978 MINOR ENSMUSG00000071337 Tia1 ENSMUST00000148728 ENSMUSP00000144857 TRANSLATION nonsense_mediated_decay - - 5 133.0 0.0 3.613 2.0 105.3 0.0 -4,-5 0.0313 1 -2.0 MINOR ENSMUSG00000071337 Tia1 ENSMUST00000123002 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000095753 ENSMUSP00000093425 TRANSLATION protein_coding - CCDS20312.1 1 386.0 0.0 8.518 14.7 230.8 0.0 -4,-5 0.9929 4 11.56 PRINCIPAL:4 ENSMUSG00000071337 Tia1 ENSMUST00000113708 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000130967 ENSMUSP00000118558 TRANSLATION protein_coding - CCDS51833.1 1 285.0 0.0 7.16 0.0 196.7 0.0 -4,-5 0.0153 3 4.782 MINOR ENSMUSG00000071337 Tia1 ENSMUST00000123267 ENSMUSP00000145407 TRANSLATION nonsense_mediated_decay start - 3 105.0 0.0 2.5 0.0 66.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071337 Tia1 ENSMUST00000095754 ENSMUSP00000093426 TRANSLATION protein_coding - - 5 385.0 0.0 8.518 14.7 230.8 0.0 -4,-5 0.8301 4 11.56 ALTERNATIVE:1 ENSMUSG00000071337 Tia1 ENSMUST00000143718 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000113713 ENSMUSP00000109342 TRANSLATION protein_coding - CCDS51834.1 1 377.0 0.0 8.32 16.4 228.4 0.0 -4,-5 1.0 3 11.604 ALTERNATIVE:1 ENSMUSG00000071337 Tia1 ENSMUST00000205024 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000203206 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000113712 ENSMUSP00000138652 TRANSLATION nonsense_mediated_decay - - 5 212.0 0.0 5.728 1.0 164.1 0.0 -4,-5 0.0122 4 -2.0 MINOR ENSMUSG00000071337 Tia1 ENSMUST00000136387 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000147104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071337 Tia1 ENSMUST00000134142 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000152852 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000156762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071337 Tia1 ENSMUST00000205109 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000203546 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000124683 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071337 Tia1 ENSMUST00000154438 ENSMUSP00000145218 TRANSLATION nonsense_mediated_decay - - 5 93.0 0.0 2.83 0.0 80.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071337 Tia1 ENSMUST00000095752 ENSMUSP00000093424 TRANSLATION protein_coding - - 5 375.0 0.0 8.32 16.4 230.8 0.0 -4,-5 0.8494 3 11.604 ALTERNATIVE:1 ENSMUSG00000071337 Tia1 ENSMUST00000141960 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000154983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071337 Tia1 ENSMUST00000149270 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000203763 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000126404 - NO_TRANSLATION retained_intron ENSMUSG00000071337 Tia1 ENSMUST00000139928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068231 Vmn1r43 ENSMUST00000226240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068231 Vmn1r43 ENSMUST00000226983 ENSMUSP00000153713 TRANSLATION protein_coding - CCDS57440.1 - 329.0 0.0 0.0 0.1 411.7 4.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068231 Vmn1r43 ENSMUST00000089418 ENSMUSP00000086839 TRANSLATION protein_coding - CCDS57440.1 - 329.0 0.0 0.0 0.1 411.7 4.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068231 Vmn1r43 ENSMUST00000226741 ENSMUSP00000154439 TRANSLATION protein_coding - CCDS57440.1 - 329.0 0.0 0.0 0.1 411.7 4.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068231 Vmn1r43 ENSMUST00000228709 ENSMUSP00000154510 TRANSLATION protein_coding - CCDS57440.1 - 329.0 0.0 0.0 0.1 411.7 4.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000002871 Tpra1 ENSMUST00000128171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002871 Tpra1 ENSMUST00000203185 ENSMUSP00000145168 TRANSLATION protein_coding - CCDS39555.1 5 369.0 0.0 0.0 4.5 305.4 16.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000002871 Tpra1 ENSMUST00000152585 ENSMUSP00000144812 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002871 Tpra1 ENSMUST00000055022 ENSMUSP00000063042 TRANSLATION protein_coding - CCDS39555.1 1 369.0 0.0 0.0 4.5 305.4 16.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000002871 Tpra1 ENSMUST00000128790 ENSMUSP00000145116 TRANSLATION nonsense_mediated_decay - - 5 210.0 0.0 0.0 0.0 174.7 14.0 -4,-7 0.0032 - -2.0 MINOR ENSMUSG00000002871 Tpra1 ENSMUST00000123257 ENSMUSP00000145118 TRANSLATION nonsense_mediated_decay start - 5 71.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000002871 Tpra1 ENSMUST00000204765 ENSMUSP00000145050 TRANSLATION protein_coding - CCDS39555.1 1 369.0 0.0 0.0 4.5 305.4 16.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000002871 Tpra1 ENSMUST00000203694 ENSMUSP00000144931 TRANSLATION nonsense_mediated_decay - - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002871 Tpra1 ENSMUST00000151379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002871 Tpra1 ENSMUST00000203648 ENSMUSP00000145404 TRANSLATION nonsense_mediated_decay - - 5 222.0 0.0 0.0 0.0 199.2 15.0 -4,-7 0.0032 - -2.0 MINOR ENSMUSG00000002871 Tpra1 ENSMUST00000129979 ENSMUSP00000145368 TRANSLATION nonsense_mediated_decay start - 5 230.0 0.0 0.0 0.0 174.7 14.0 -4,-7 0.0032 - -2.0 MINOR ENSMUSG00000002871 Tpra1 ENSMUST00000150236 ENSMUSP00000145098 TRANSLATION protein_coding start - 5 222.0 0.0 0.0 0.0 171.7 14.0 -4,-7 0.0032 - -2.0 MINOR ENSMUSG00000002871 Tpra1 ENSMUST00000153885 - NO_TRANSLATION retained_intron ENSMUSG00000002871 Tpra1 ENSMUST00000141163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002871 Tpra1 ENSMUST00000153874 ENSMUSP00000118017 TRANSLATION protein_coding stop - 5 188.0 0.0 0.0 0.0 167.4 13.0 -4,-7 0.0024 - -2.0 MINOR ENSMUSG00000002871 Tpra1 ENSMUST00000203345 ENSMUSP00000144846 TRANSLATION protein_coding - - 5 192.0 0.0 0.0 0.0 153.4 9.0 -4,-7 0.0024 - 0.0 MINOR ENSMUSG00000002871 Tpra1 ENSMUST00000144405 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002871 Tpra1 ENSMUST00000138415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002871 Tpra1 ENSMUST00000152045 - NO_TRANSLATION retained_intron ENSMUSG00000002871 Tpra1 ENSMUST00000203155 - NO_TRANSLATION retained_intron ENSMUSG00000002871 Tpra1 ENSMUST00000204584 - NO_TRANSLATION retained_intron ENSMUSG00000002871 Tpra1 ENSMUST00000148874 - NO_TRANSLATION retained_intron ENSMUSG00000002871 Tpra1 ENSMUST00000135778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056666 Retsat ENSMUST00000176364 ENSMUSP00000134847 TRANSLATION protein_coding - - 5 548.0 18.0 11.08 0.0 0.0 0.0 3,-1 0.0055 9 4.002 MINOR ENSMUSG00000056666 Retsat ENSMUST00000070597 ENSMUSP00000068568 TRANSLATION protein_coding - CCDS20244.1 1 609.0 34.0 12.08 4.0 51.0 0.0 3,-1 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000056666 Retsat ENSMUST00000176168 ENSMUSP00000135421 TRANSLATION protein_coding - - 5 400.0 17.0 9.08 0.0 0.0 0.0 3,-1 0.0026 7 0.0 MINOR ENSMUSG00000056666 Retsat ENSMUST00000175824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056666 Retsat ENSMUST00000129071 ENSMUSP00000116567 TRANSLATION protein_coding start - 2 99.0 2.0 2.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000056666 Retsat ENSMUST00000205878 ENSMUSP00000146069 TRANSLATION protein_coding start - 5 147.0 2.0 3.75 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000038077 Kcna6 ENSMUST00000185333 ENSMUSP00000139481 TRANSLATION protein_coding - CCDS20556.1 1 529.0 0.0 0.5 8.9 264.1 2.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000038077 Kcna6 ENSMUST00000128137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038077 Kcna6 ENSMUST00000112242 ENSMUSP00000107861 TRANSLATION protein_coding - CCDS20556.1 - 529.0 0.0 0.5 8.9 264.1 2.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000038077 Kcna6 ENSMUST00000040751 ENSMUSP00000036872 TRANSLATION nonsense_mediated_decay - CCDS20556.1 1 529.0 0.0 0.5 8.9 264.1 2.0 -4,-5 1.0 4 -2.0 MINOR ENSMUSG00000003452 Bicd1 ENSMUST00000111513 ENSMUSP00000107138 TRANSLATION protein_coding - CCDS51962.1 1 826.0 0.0 3.0 0.4 1159.8 0.0 -4,-5 0.4217 8 6.0 MINOR ENSMUSG00000003452 Bicd1 ENSMUST00000173408 ENSMUSP00000133727 TRANSLATION nonsense_mediated_decay - - 5 827.0 0.0 3.0 12.1 1159.8 0.0 -4,-5 0.7724 8 -2.0 MINOR ENSMUSG00000003452 Bicd1 ENSMUST00000003544 ENSMUSP00000003544 TRANSLATION protein_coding - - 5 975.0 0.0 3.0 14.7 1159.8 0.0 -4,-5 0.773 8 9.652 ALTERNATIVE:1 ENSMUSG00000003452 Bicd1 ENSMUST00000086829 ENSMUSP00000084039 TRANSLATION protein_coding - CCDS39723.1 1 835.0 0.0 3.0 16.0 1159.8 0.0 -4,-5 1.0 8 10.0 PRINCIPAL:4 ENSMUSG00000003452 Bicd1 ENSMUST00000130270 - NO_TRANSLATION retained_intron ENSMUSG00000003452 Bicd1 ENSMUST00000140759 - NO_TRANSLATION retained_intron ENSMUSG00000003452 Bicd1 ENSMUST00000172926 ENSMUSP00000133986 TRANSLATION protein_coding start/stop - 5 137.0 0.0 2.0 0.0 224.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003452 Bicd1 ENSMUST00000203502 - NO_TRANSLATION retained_intron ENSMUSG00000003452 Bicd1 ENSMUST00000174886 - NO_TRANSLATION retained_intron ENSMUSG00000030108 Slc6a13 ENSMUST00000142419 ENSMUSP00000120689 TRANSLATION protein_coding stop - 5 192.0 0.0 3.375 0.0 255.1 3.0 -4,-7 0.0015 1 -2.0 MINOR ENSMUSG00000030108 Slc6a13 ENSMUST00000142144 - NO_TRANSLATION retained_intron ENSMUSG00000030108 Slc6a13 ENSMUST00000142021 - NO_TRANSLATION retained_intron ENSMUSG00000030108 Slc6a13 ENSMUST00000064580 ENSMUSP00000066779 TRANSLATION protein_coding - CCDS20490.1 1 602.0 0.0 12.705 13.4 829.4 12.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000029683 Lmod2 ENSMUST00000031694 ENSMUSP00000031694 TRANSLATION protein_coding - CCDS19944.1 1 550.0 0.0 1.4 4.3 57.4 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000076598 Igkv3-7 ENSMUST00000103399 ENSMUSP00000100200 TRANSLATION IG_V_gene start/stop - - 99.0 0.0 1.0 0.0 73.5 0.0 -4,-2 0.0236 2 -2.0 ALTERNATIVE:2 ENSMUSG00000076598 Igkv3-7 ENSMUST00000197560 ENSMUSP00000142610 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.1 73.5 0.0 4,-1 0.821 2 -2.0 PRINCIPAL:5 ENSMUSG00000059689 Zfp637 ENSMUST00000132644 - NO_TRANSLATION retained_intron ENSMUSG00000059689 Zfp637 ENSMUST00000137224 ENSMUSP00000120884 TRANSLATION protein_coding stop - 1 202.0 16.0 2.0 0.0 111.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000059689 Zfp637 ENSMUST00000112858 ENSMUSP00000108479 TRANSLATION protein_coding - - 2 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000059689 Zfp637 ENSMUST00000134526 ENSMUSP00000115733 TRANSLATION protein_coding stop - 5 153.0 11.0 1.0 0.0 80.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059689 Zfp637 ENSMUST00000164472 ENSMUSP00000130144 TRANSLATION protein_coding - CCDS39607.1 1 272.0 27.0 3.0 10.3 162.1 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000059689 Zfp637 ENSMUST00000127593 - NO_TRANSLATION retained_intron ENSMUSG00000059689 Zfp637 ENSMUST00000223041 ENSMUSP00000152569 TRANSLATION protein_coding - CCDS85139.1 1 286.0 27.0 3.0 5.5 162.1 0.0 -4,-7 0.7776 - 19.452 MINOR ENSMUSG00000059689 Zfp637 ENSMUST00000112859 ENSMUSP00000108480 TRANSLATION protein_coding - - 2 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000059689 Zfp637 ENSMUST00000112860 ENSMUSP00000108481 TRANSLATION protein_coding - CCDS85139.1 1 286.0 27.0 3.0 5.5 162.1 0.0 -4,-7 0.7776 - 19.452 MINOR ENSMUSG00000059689 Zfp637 ENSMUST00000112861 ENSMUSP00000108482 TRANSLATION protein_coding - CCDS39607.1 2 272.0 27.0 3.0 10.3 162.1 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000059689 Zfp637 ENSMUST00000136889 ENSMUSP00000123106 TRANSLATION protein_coding stop - 3 153.0 11.0 1.0 0.0 80.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056698 Elmod3 ENSMUST00000152705 ENSMUSP00000116448 TRANSLATION protein_coding stop - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056698 Elmod3 ENSMUST00000148108 ENSMUSP00000145907 TRANSLATION protein_coding stop - 5 213.0 0.0 4.0 0.0 70.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000056698 Elmod3 ENSMUST00000141833 ENSMUSP00000145544 TRANSLATION protein_coding - - 1 328.0 0.0 5.95 0.0 107.7 0.0 -4,-5 0.006 2 10.398 MINOR ENSMUSG00000056698 Elmod3 ENSMUST00000070990 ENSMUSP00000067768 TRANSLATION protein_coding - CCDS20243.1 1 381.0 0.0 6.75 8.8 107.7 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000056698 Elmod3 ENSMUST00000114069 ENSMUSP00000109703 TRANSLATION protein_coding - CCDS20243.1 1 381.0 0.0 6.75 8.8 107.7 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000056698 Elmod3 ENSMUST00000140825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030216 Wbp11 ENSMUST00000129078 - NO_TRANSLATION retained_intron ENSMUSG00000030216 Wbp11 ENSMUST00000146348 ENSMUSP00000145155 TRANSLATION protein_coding stop - 5 32.0 0.0 0.0 0.0 33.0 0.0 -4,-6 0.0005 1 -2.0 MINOR ENSMUSG00000030216 Wbp11 ENSMUST00000141598 - NO_TRANSLATION retained_intron ENSMUSG00000030216 Wbp11 ENSMUST00000116514 ENSMUSP00000112213 TRANSLATION protein_coding - CCDS20655.1 1 641.0 0.0 0.0 0.0 85.3 0.0 -4,-6 1.0 16 6.0 PRINCIPAL:1 ENSMUSG00000030216 Wbp11 ENSMUST00000151333 - NO_TRANSLATION retained_intron ENSMUSG00000030216 Wbp11 ENSMUST00000204272 ENSMUSP00000145501 TRANSLATION nonsense_mediated_decay - - 5 194.0 0.0 0.0 0.0 85.3 0.0 -4,-6 0.0404 4 -2.0 MINOR ENSMUSG00000030216 Wbp11 ENSMUST00000204129 ENSMUSP00000144977 TRANSLATION protein_coding start/stop - 1 143.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000115170 Vmn1r38 ENSMUST00000227694 ENSMUSP00000154495 TRANSLATION protein_coding - CCDS20216.1 - 302.0 0.0 0.0 0.4 175.3 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115170 Vmn1r38 ENSMUST00000227493 ENSMUSP00000154068 TRANSLATION protein_coding - CCDS20216.1 - 302.0 0.0 0.0 0.4 175.3 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115170 Vmn1r38 ENSMUST00000226457 ENSMUSP00000153903 TRANSLATION protein_coding - CCDS20216.1 - 302.0 0.0 0.0 0.4 175.3 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030143 Prb1c ENSMUST00000080849 ENSMUSP00000079660 TRANSLATION protein_coding - CCDS57459.1 1 283.0 0.0 0.0 0.0 145.4 0.0 3,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000041791 Capza3 ENSMUST00000043797 ENSMUSP00000038562 TRANSLATION protein_coding - CCDS20672.1 - 299.0 0.0 1.0 10.3 210.9 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000041791 Capza3 ENSMUST00000204342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029534 St7 ENSMUST00000132175 - NO_TRANSLATION retained_intron ENSMUSG00000029534 St7 ENSMUST00000154059 - NO_TRANSLATION retained_intron ENSMUSG00000029534 St7 ENSMUST00000077080 ENSMUSP00000076334 TRANSLATION protein_coding - CCDS71730.1 1 531.0 0.0 9.45 2.8 1004.6 6.0 -4,-6 0.1747 4 6.608 MINOR ENSMUSG00000029534 St7 ENSMUST00000000674 ENSMUSP00000000674 TRANSLATION protein_coding - CCDS71731.1 1 508.0 0.0 10.2 3.6 1020.1 6.0 -4,-6 0.2842 4 9.178 MINOR ENSMUSG00000029534 St7 ENSMUST00000115418 ENSMUSP00000111078 TRANSLATION protein_coding - - 5 503.0 0.0 8.0 0.0 873.7 4.0 -3,-6 0.0563 3 1.602 MINOR ENSMUSG00000029534 St7 ENSMUST00000127322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029534 St7 ENSMUST00000115419 ENSMUSP00000111079 TRANSLATION protein_coding - CCDS80490.1 1 572.0 0.0 9.45 6.1 1030.3 7.0 -3,-6 0.3693 5 8.718 MINOR ENSMUSG00000029534 St7 ENSMUST00000150281 ENSMUSP00000116304 TRANSLATION nonsense_mediated_decay - - 5 64.0 0.0 0.0 0.0 38.5 1.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000029534 St7 ENSMUST00000115417 ENSMUSP00000111077 TRANSLATION protein_coding - CCDS39431.1 1 511.0 0.0 10.2 24.3 1019.6 6.0 -4,-7 0.8858 4 12.7 MINOR ENSMUSG00000029534 St7 ENSMUST00000138726 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029534 St7 ENSMUST00000081635 ENSMUSP00000080341 TRANSLATION protein_coding - CCDS71728.1 1 577.0 0.0 9.45 6.1 1058.1 7.0 -3,-6 0.3577 5 10.386 MINOR ENSMUSG00000029534 St7 ENSMUST00000115420 ENSMUSP00000111080 TRANSLATION protein_coding - - 5 523.0 0.0 9.2 0.0 874.3 7.0 -3,-6 0.0993 3 4.002 MINOR ENSMUSG00000029534 St7 ENSMUST00000140358 - NO_TRANSLATION retained_intron ENSMUSG00000029534 St7 ENSMUST00000129105 - NO_TRANSLATION retained_intron ENSMUSG00000029534 St7 ENSMUST00000053148 ENSMUSP00000057326 TRANSLATION protein_coding - CCDS19927.1 1 534.0 0.0 9.45 6.0 1003.9 6.0 -4,-7 0.3723 4 7.118 MINOR ENSMUSG00000029534 St7 ENSMUST00000144488 ENSMUSP00000115215 TRANSLATION nonsense_mediated_decay - - 5 83.0 0.0 0.0 0.0 97.7 1.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000029534 St7 ENSMUST00000144743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029534 St7 ENSMUST00000130084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029534 St7 ENSMUST00000154497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029534 St7 ENSMUST00000052113 ENSMUSP00000062886 TRANSLATION protein_coding - CCDS71729.1 1 554.0 0.0 10.2 17.9 1074.6 7.0 -3,-6 1.0 5 14.9 PRINCIPAL:1 ENSMUSG00000029534 St7 ENSMUST00000125673 ENSMUSP00000122970 TRANSLATION nonsense_mediated_decay - - 5 52.0 0.0 0.0 0.0 35.6 1.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000045441 Gprin3 ENSMUST00000051065 ENSMUSP00000051805 TRANSLATION protein_coding - CCDS20199.1 1 763.0 0.0 0.0 0.0 158.9 0.0 -4,-6 1.0 27 6.0 PRINCIPAL:1 ENSMUSG00000030104 Edem1 ENSMUST00000203302 - NO_TRANSLATION retained_intron ENSMUSG00000030104 Edem1 ENSMUST00000203469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030104 Edem1 ENSMUST00000204804 ENSMUSP00000144901 TRANSLATION nonsense_mediated_decay - - 1 539.0 0.0 4.79 0.0 324.9 0.0 2,-2 0.0047 2 -2.0 MINOR ENSMUSG00000030104 Edem1 ENSMUST00000204524 - NO_TRANSLATION retained_intron ENSMUSG00000030104 Edem1 ENSMUST00000089162 ENSMUSP00000086565 TRANSLATION protein_coding - CCDS20402.1 1 652.0 0.0 5.83 0.4 404.8 0.0 2,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000115799 Vmn1r19 ENSMUST00000089830 ENSMUSP00000087264 TRANSLATION protein_coding - CCDS20182.1 - 308.0 0.0 0.0 0.0 190.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000107499 Ccdc142 ENSMUST00000203533 - NO_TRANSLATION retained_intron ENSMUSG00000107499 Ccdc142 ENSMUST00000101254 ENSMUSP00000098812 TRANSLATION protein_coding - CCDS39527.1 5 738.0 0.0 0.0 0.4 566.1 0.0 -2,-4 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000107499 Ccdc142 ENSMUST00000134891 - NO_TRANSLATION retained_intron ENSMUSG00000072662 Mansc4 ENSMUST00000100780 ENSMUSP00000098343 TRANSLATION protein_coding - CCDS20705.1 1 337.0 0.0 2.0 0.0 31.4 0.0 3,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000072662 Mansc4 ENSMUST00000123367 ENSMUSP00000144765 TRANSLATION protein_coding - - 2 149.0 0.0 2.0 0.0 33.8 0.0 3,-2 0.1549 - 8.0 ALTERNATIVE:2 ENSMUSG00000091625 Lsm5 ENSMUST00000177144 ENSMUSP00000135337 TRANSLATION nonsense_mediated_decay start - 3 42.0 0.0 1.5 0.0 27.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000091625 Lsm5 ENSMUST00000175865 - NO_TRANSLATION retained_intron ENSMUSG00000091625 Lsm5 ENSMUST00000203958 ENSMUSP00000144811 TRANSLATION protein_coding - - 3 59.0 0.0 2.16 0.0 27.2 0.0 -4,-6 0.0 - 6.258 MINOR ENSMUSG00000091625 Lsm5 ENSMUST00000176595 ENSMUSP00000145140 TRANSLATION protein_coding - - 5 59.0 0.0 1.665 0.0 28.1 0.0 -4,-5 0.0048 1 5.34 MINOR ENSMUSG00000091625 Lsm5 ENSMUST00000170382 ENSMUSP00000126565 TRANSLATION protein_coding - CCDS51788.1 1 91.0 0.0 3.16 31.2 72.4 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000004988 Fxyd4 ENSMUST00000204950 ENSMUSP00000145182 TRANSLATION protein_coding - - 3 99.0 0.0 1.9975 0.0 60.2 1.0 4,-1 0.0371 - 9.546 MINOR ENSMUSG00000004988 Fxyd4 ENSMUST00000203082 ENSMUSP00000144700 TRANSLATION protein_coding - CCDS20468.1 1 88.0 0.0 2.245 10.2 85.9 2.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004988 Fxyd4 ENSMUST00000203066 ENSMUSP00000145293 TRANSLATION protein_coding - - 3 90.0 0.0 2.245 2.0 85.9 2.0 4,-1 0.3652 1 12.327 MINOR ENSMUSG00000004988 Fxyd4 ENSMUST00000005114 ENSMUSP00000005114 TRANSLATION protein_coding - CCDS20468.1 5 88.0 0.0 2.245 10.2 85.9 2.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004988 Fxyd4 ENSMUST00000203433 ENSMUSP00000144773 TRANSLATION protein_coding - - 3 99.0 0.0 1.9975 0.0 60.2 1.0 4,-1 0.0371 - 9.546 MINOR ENSMUSG00000004988 Fxyd4 ENSMUST00000204214 ENSMUSP00000145302 TRANSLATION protein_coding - CCDS20468.1 1 88.0 0.0 2.245 10.2 85.9 2.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004988 Fxyd4 ENSMUST00000203921 - NO_TRANSLATION retained_intron ENSMUSG00000004988 Fxyd4 ENSMUST00000205111 - NO_TRANSLATION retained_intron ENSMUSG00000004988 Fxyd4 ENSMUST00000203842 - NO_TRANSLATION retained_intron ENSMUSG00000034639 Setmar ENSMUST00000138140 ENSMUSP00000145263 TRANSLATION nonsense_mediated_decay - - 3 60.0 0.0 0.48 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034639 Setmar ENSMUST00000049246 ENSMUSP00000048225 TRANSLATION protein_coding - CCDS51867.1 1 309.0 29.0 1.28 1.2 118.7 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000001518 Itfg2 ENSMUST00000203374 ENSMUSP00000145323 TRANSLATION protein_coding - - 5 411.0 6.0 0.0 0.0 491.2 0.0 -4,-7 0.0114 4 9.024 MINOR ENSMUSG00000001518 Itfg2 ENSMUST00000203195 - NO_TRANSLATION retained_intron ENSMUSG00000001518 Itfg2 ENSMUST00000133994 - NO_TRANSLATION retained_intron ENSMUSG00000001518 Itfg2 ENSMUST00000203026 ENSMUSP00000145388 TRANSLATION nonsense_mediated_decay - - 3 136.0 4.0 0.0 0.0 101.7 0.0 -4,-7 0.0004 1 -2.0 MINOR ENSMUSG00000001518 Itfg2 ENSMUST00000142615 ENSMUSP00000145111 TRANSLATION protein_coding - - 1 358.0 8.0 0.0 0.0 453.4 0.0 -4,-7 0.0123 3 8.256 MINOR ENSMUSG00000001518 Itfg2 ENSMUST00000204362 - NO_TRANSLATION retained_intron ENSMUSG00000001518 Itfg2 ENSMUST00000001559 ENSMUSP00000001559 TRANSLATION protein_coding - CCDS20572.1 1 443.0 8.0 0.0 10.2 515.8 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000001518 Itfg2 ENSMUST00000203984 ENSMUSP00000144837 TRANSLATION protein_coding start - 2 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001518 Itfg2 ENSMUST00000203853 ENSMUSP00000145282 TRANSLATION nonsense_mediated_decay - - 5 87.0 4.0 0.0 0.0 39.6 0.0 -4,-7 0.0004 1 -2.0 MINOR ENSMUSG00000001518 Itfg2 ENSMUST00000204467 - NO_TRANSLATION retained_intron ENSMUSG00000093820 Vmn2r21 ENSMUST00000163607 ENSMUSP00000128981 TRANSLATION protein_coding - CCDS51899.1 5 853.0 5.0 2.24 0.8 395.0 0.0 2,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000029664 Tfpi2 ENSMUST00000031674 ENSMUSP00000031674 TRANSLATION protein_coding - CCDS19892.1 1 230.0 0.0 4.88 0.1 164.4 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029664 Tfpi2 ENSMUST00000183682 ENSMUSP00000139066 TRANSLATION protein_coding stop - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029664 Tfpi2 ENSMUST00000203257 ENSMUSP00000145193 TRANSLATION protein_coding stop - 3 111.0 0.0 2.375 0.0 66.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035199 Arl6ip5 ENSMUST00000044681 ENSMUSP00000041503 TRANSLATION protein_coding - CCDS20384.1 1 188.0 0.0 3.0 25.0 132.6 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030082 Sec61a1 ENSMUST00000139676 - NO_TRANSLATION retained_intron ENSMUSG00000030082 Sec61a1 ENSMUST00000145421 - NO_TRANSLATION retained_intron ENSMUSG00000030082 Sec61a1 ENSMUST00000032168 ENSMUSP00000032168 TRANSLATION protein_coding - CCDS39553.1 1 476.0 0.0 10.0 36.9 0.0 0.0 -4,-7 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000030082 Sec61a1 ENSMUST00000203200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030082 Sec61a1 ENSMUST00000125016 - NO_TRANSLATION retained_intron ENSMUSG00000030082 Sec61a1 ENSMUST00000204502 - NO_TRANSLATION retained_intron ENSMUSG00000030082 Sec61a1 ENSMUST00000130918 - NO_TRANSLATION retained_intron ENSMUSG00000030082 Sec61a1 ENSMUST00000136103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030082 Sec61a1 ENSMUST00000139551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030082 Sec61a1 ENSMUST00000155079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030082 Sec61a1 ENSMUST00000130807 - NO_TRANSLATION retained_intron ENSMUSG00000030082 Sec61a1 ENSMUST00000203943 - NO_TRANSLATION retained_intron ENSMUSG00000002870 Mcm2 ENSMUST00000203935 ENSMUSP00000145337 TRANSLATION nonsense_mediated_decay start - 5 34.0 6.0 0.0 0.0 0.0 0.0 -4,-7 0.0004 - -2.0 MINOR ENSMUSG00000002870 Mcm2 ENSMUST00000203172 - NO_TRANSLATION retained_intron ENSMUSG00000002870 Mcm2 ENSMUST00000204365 - NO_TRANSLATION retained_intron ENSMUSG00000002870 Mcm2 ENSMUST00000058011 ENSMUSP00000061923 TRANSLATION protein_coding - CCDS39554.1 1 904.0 13.0 14.1 11.4 709.4 0.0 -4,-1 1.0 24 21.0 PRINCIPAL:1 ENSMUSG00000002870 Mcm2 ENSMUST00000204393 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002870 Mcm2 ENSMUST00000204217 - NO_TRANSLATION retained_intron ENSMUSG00000002870 Mcm2 ENSMUST00000205165 ENSMUSP00000145295 TRANSLATION nonsense_mediated_decay start - 3 90.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000047867 Gimap6 ENSMUST00000126422 ENSMUSP00000145325 TRANSLATION protein_coding - - 3 110.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000047867 Gimap6 ENSMUST00000053661 ENSMUSP00000059371 TRANSLATION protein_coding - CCDS20111.1 1 305.0 18.0 0.8 0.4 239.6 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000047867 Gimap6 ENSMUST00000119315 ENSMUSP00000113918 TRANSLATION protein_coding - - 1 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000047867 Gimap6 ENSMUST00000132725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095753 Igkv4-53 ENSMUST00000198328 ENSMUSP00000143120 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.2 0.0 55.5 0.0 -1,-5 0.7937 2 -2.0 PRINCIPAL:5 ENSMUSG00000095753 Igkv4-53 ENSMUST00000166380 ENSMUSP00000128717 TRANSLATION IG_V_gene start/stop - - 97.0 0.0 1.0 0.0 55.5 0.0 -4,-5 0.0222 2 -2.0 ALTERNATIVE:2 ENSMUSG00000053012 Krcc1 ENSMUST00000168700 ENSMUSP00000130252 TRANSLATION protein_coding - CCDS20228.1 1 256.0 0.0 0.4 8.1 0.0 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000053012 Krcc1 ENSMUST00000204436 ENSMUSP00000145416 TRANSLATION protein_coding - CCDS20228.1 1 256.0 0.0 0.4 8.1 0.0 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000053012 Krcc1 ENSMUST00000080949 ENSMUSP00000079748 TRANSLATION protein_coding - CCDS20228.1 1 256.0 0.0 0.4 8.1 0.0 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000053012 Krcc1 ENSMUST00000205123 ENSMUSP00000145024 TRANSLATION protein_coding stop - 3 85.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0461 - -2.0 MINOR ENSMUSG00000038648 Creb3l2 ENSMUST00000128534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038648 Creb3l2 ENSMUST00000041093 ENSMUSP00000040208 TRANSLATION protein_coding - CCDS20006.1 1 521.0 0.0 2.85 11.0 52.7 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000095794 Igkv6-17 ENSMUST00000103391 ENSMUSP00000100192 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.0 0.0 56.0 0.0 4,-1 0.8323 1 -2.0 PRINCIPAL:1 ENSMUSG00000058119 Gm5771 ENSMUST00000049079 ENSMUSP00000039684 TRANSLATION protein_coding - CCDS20048.1 1 245.0 25.0 4.0 33.9 270.8 0.0 4,-1 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000029816 Gpnmb ENSMUST00000031840 ENSMUSP00000031840 TRANSLATION protein_coding - CCDS20122.1 1 574.0 0.0 0.0 0.1 34.8 1.0 2,-2 0.4006 7 0.0 ALTERNATIVE:2 ENSMUSG00000029816 Gpnmb ENSMUST00000203757 ENSMUSP00000145090 TRANSLATION nonsense_mediated_decay - - 2 37.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0043 - -2.0 MINOR ENSMUSG00000029816 Gpnmb ENSMUST00000205103 - NO_TRANSLATION retained_intron ENSMUSG00000029816 Gpnmb ENSMUST00000204460 - NO_TRANSLATION retained_intron ENSMUSG00000029816 Gpnmb ENSMUST00000204260 ENSMUSP00000145376 TRANSLATION protein_coding - - 1 526.0 0.0 0.0 0.0 34.8 1.0 2,-2 0.7718 6 0.0 PRINCIPAL:2 ENSMUSG00000115507 Vmn1r24 ENSMUST00000228315 ENSMUSP00000153775 TRANSLATION protein_coding - CCDS20188.1 - 296.0 0.0 0.0 1.0 180.8 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115507 Vmn1r24 ENSMUST00000228097 ENSMUSP00000154405 TRANSLATION protein_coding - CCDS20188.1 - 296.0 0.0 0.0 1.0 180.8 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030036 Mogs ENSMUST00000032114 ENSMUSP00000032114 TRANSLATION protein_coding - CCDS20273.1 1 834.0 0.0 2.93 3.2 833.8 0.0 -4,0 1.0 19 13.0 PRINCIPAL:1 ENSMUSG00000030036 Mogs ENSMUST00000145403 - NO_TRANSLATION retained_intron ENSMUSG00000029918 Mrps33 ENSMUST00000114797 ENSMUSP00000110445 TRANSLATION protein_coding - CCDS39464.1 1 34.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0154 - 1.998 MINOR ENSMUSG00000029918 Mrps33 ENSMUST00000201461 ENSMUSP00000144539 TRANSLATION protein_coding - CCDS39464.1 2 34.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0154 - 1.998 MINOR ENSMUSG00000029918 Mrps33 ENSMUST00000031978 ENSMUSP00000031978 TRANSLATION protein_coding - CCDS20026.1 1 106.0 0.0 3.0 35.1 86.0 0.0 -4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000029918 Mrps33 ENSMUST00000139992 - NO_TRANSLATION retained_intron ENSMUSG00000071494 Or10ac1 ENSMUST00000217978 ENSMUSP00000151418 TRANSLATION protein_coding - CCDS39473.2 5 317.0 0.0 1.0 1.1 132.4 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000071494 Or10ac1 ENSMUST00000171307 ENSMUSP00000130187 TRANSLATION protein_coding - CCDS39473.2 - 317.0 0.0 1.0 1.1 132.4 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000014554 Dguok ENSMUST00000147060 - NO_TRANSLATION retained_intron ENSMUSG00000014554 Dguok ENSMUST00000113888 ENSMUSP00000109520 TRANSLATION protein_coding - CCDS51821.1 1 236.0 12.0 4.775 0.0 217.8 0.0 -4,0 0.0847 6 12.552 MINOR ENSMUSG00000014554 Dguok ENSMUST00000014698 ENSMUSP00000014698 TRANSLATION protein_coding - CCDS20279.1 1 277.0 14.0 6.105 8.1 242.1 0.0 -4,0 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000014554 Dguok ENSMUST00000206974 - NO_TRANSLATION retained_intron ENSMUSG00000014554 Dguok ENSMUST00000138941 ENSMUSP00000146160 TRANSLATION nonsense_mediated_decay start - 3 205.0 9.0 3.98 0.0 165.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000014554 Dguok ENSMUST00000206397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014554 Dguok ENSMUST00000145455 ENSMUSP00000138197 TRANSLATION nonsense_mediated_decay start - 2 87.0 0.0 0.765 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000014554 Dguok ENSMUST00000153415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000115705 Vmn1r28 ENSMUST00000227805 ENSMUSP00000154482 TRANSLATION protein_coding - CCDS20193.1 - 302.0 0.0 0.0 0.4 193.9 4.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115705 Vmn1r28 ENSMUST00000226813 ENSMUSP00000153799 TRANSLATION protein_coding - CCDS20193.1 - 302.0 0.0 0.0 0.4 193.9 4.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115705 Vmn1r28 ENSMUST00000228678 ENSMUSP00000153785 TRANSLATION protein_coding - CCDS20193.1 - 302.0 0.0 0.0 0.4 193.9 4.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000076607 Igkj4 ENSMUST00000103408 ENSMUSP00000143297 TRANSLATION IG_J_gene start/stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000076463 Trbv3 ENSMUST00000103264 ENSMUSP00000100080 TRANSLATION TR_V_gene stop - - 117.0 0.0 1.0 0.0 57.9 0.0 1,-3 0.8281 - -2.0 PRINCIPAL:1 ENSMUSG00000072770 Acrbp ENSMUST00000136100 - NO_TRANSLATION retained_intron ENSMUSG00000072770 Acrbp ENSMUST00000124159 - NO_TRANSLATION retained_intron ENSMUSG00000072770 Acrbp ENSMUST00000112412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072770 Acrbp ENSMUST00000032481 ENSMUSP00000032481 TRANSLATION protein_coding - - 1 167.0 0.0 0.0 0.0 247.8 0.0 3,-2 0.0031 1 0.0 MINOR ENSMUSG00000072770 Acrbp ENSMUST00000112413 ENSMUSP00000108032 TRANSLATION protein_coding - - 2 170.0 0.0 0.0 0.0 318.3 0.0 3,-2 0.0043 2 0.0 MINOR ENSMUSG00000072770 Acrbp ENSMUST00000112414 ENSMUSP00000108033 TRANSLATION protein_coding - CCDS51910.1 1 316.0 0.0 0.0 0.1 453.8 0.0 3,-2 0.3612 6 2.0 ALTERNATIVE:2 ENSMUSG00000072770 Acrbp ENSMUST00000088294 ENSMUSP00000085632 TRANSLATION protein_coding - CCDS20542.1 1 540.0 0.0 0.0 0.4 453.8 0.0 3,-2 1.0 12 2.0 PRINCIPAL:2 ENSMUSG00000030008 Pradc1 ENSMUST00000122907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030008 Pradc1 ENSMUST00000146086 - NO_TRANSLATION retained_intron ENSMUSG00000030008 Pradc1 ENSMUST00000032080 ENSMUSP00000032080 TRANSLATION protein_coding - CCDS51828.1 1 188.0 0.0 4.75 8.5 29.3 0.0 3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000030008 Pradc1 ENSMUST00000113770 ENSMUSP00000109400 TRANSLATION protein_coding - CCDS39538.1 1 132.0 0.0 3.0 0.1 0.0 0.0 3,-2 0.026 - 2.502 MINOR ENSMUSG00000030008 Pradc1 ENSMUST00000139875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030008 Pradc1 ENSMUST00000203934 - NO_TRANSLATION retained_intron ENSMUSG00000030008 Pradc1 ENSMUST00000126805 ENSMUSP00000145290 TRANSLATION protein_coding - - 2 61.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000030008 Pradc1 ENSMUST00000154918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030309 Caprin2 ENSMUST00000122909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030309 Caprin2 ENSMUST00000072324 ENSMUSP00000072165 TRANSLATION protein_coding - - 5 812.0 0.0 7.3 0.3 503.4 0.0 -4,-6 0.1216 3 8.0 ALTERNATIVE:2 ENSMUSG00000030309 Caprin2 ENSMUST00000204564 - NO_TRANSLATION retained_intron ENSMUSG00000030309 Caprin2 ENSMUST00000151640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030309 Caprin2 ENSMUST00000127941 ENSMUSP00000145114 TRANSLATION protein_coding start - 3 172.0 0.0 0.0 0.0 197.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030309 Caprin2 ENSMUST00000132535 - NO_TRANSLATION retained_intron ENSMUSG00000030309 Caprin2 ENSMUST00000204942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030309 Caprin2 ENSMUST00000154971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030309 Caprin2 ENSMUST00000139914 ENSMUSP00000121685 TRANSLATION protein_coding stop - 3 131.0 0.0 2.45 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030309 Caprin2 ENSMUST00000111569 ENSMUSP00000107195 TRANSLATION protein_coding - CCDS39720.1 1 1031.0 0.0 7.3 0.1 503.4 0.0 -4,-6 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000030309 Caprin2 ENSMUST00000203014 - NO_TRANSLATION retained_intron ENSMUSG00000042770 Hebp1 ENSMUST00000204730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042770 Hebp1 ENSMUST00000045855 ENSMUSP00000042232 TRANSLATION protein_coding - CCDS20645.1 1 190.0 0.0 3.75 18.9 130.4 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000042770 Hebp1 ENSMUST00000205232 - NO_TRANSLATION retained_intron ENSMUSG00000042770 Hebp1 ENSMUST00000204000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076596 Igkv3-10 ENSMUST00000103397 ENSMUSP00000100198 TRANSLATION IG_V_gene stop - - 118.0 0.0 1.1 0.1 73.5 0.0 3,-2 0.3378 - -2.0 ALTERNATIVE:2 ENSMUSG00000076596 Igkv3-10 ENSMUST00000196940 ENSMUSP00000143628 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.1 73.5 0.0 3,-2 0.8196 - -2.0 PRINCIPAL:5 ENSMUSG00000033940 Brk1 ENSMUST00000035725 ENSMUSP00000041644 TRANSLATION protein_coding - CCDS39595.1 1 75.0 2.0 2.08 0.0 0.0 0.0 -4,-5 0.9849 6 8.0 PRINCIPAL:1 ENSMUSG00000030057 Cnbp ENSMUST00000032138 ENSMUSP00000032138 TRANSLATION protein_coding - CCDS51841.1 1 178.0 28.0 2.0 18.9 209.1 0.0 -4,-7 0.9313 6 16.996 ALTERNATIVE:1 ENSMUSG00000030057 Cnbp ENSMUST00000141961 - NO_TRANSLATION retained_intron ENSMUSG00000030057 Cnbp ENSMUST00000204890 ENSMUSP00000145227 TRANSLATION protein_coding - - 1 171.0 28.0 2.0 24.9 209.1 0.0 -4,-7 0.894 7 18.0 PRINCIPAL:3 ENSMUSG00000030057 Cnbp ENSMUST00000204104 - NO_TRANSLATION retained_intron ENSMUSG00000030057 Cnbp ENSMUST00000204596 - NO_TRANSLATION retained_intron ENSMUSG00000030057 Cnbp ENSMUST00000204653 ENSMUSP00000145274 TRANSLATION protein_coding - CCDS85091.1 1 177.0 28.0 2.0 18.9 209.1 0.0 -4,-7 0.9358 6 16.996 ALTERNATIVE:1 ENSMUSG00000030057 Cnbp ENSMUST00000113617 ENSMUSP00000109247 TRANSLATION protein_coding - CCDS85091.1 5 177.0 28.0 2.0 18.9 209.1 0.0 -4,-7 0.9358 6 16.996 ALTERNATIVE:1 ENSMUSG00000030057 Cnbp ENSMUST00000134851 - NO_TRANSLATION retained_intron ENSMUSG00000030057 Cnbp ENSMUST00000113619 ENSMUSP00000109249 TRANSLATION protein_coding - CCDS85092.1 1 170.0 28.0 2.0 24.9 209.1 0.0 -4,-7 1.0 6 18.0 ALTERNATIVE:1 ENSMUSG00000096594 Igkv8-19 ENSMUST00000103389 ENSMUSP00000100190 TRANSLATION IG_V_gene start/stop - - 101.0 0.0 1.0 0.0 69.1 0.0 -4,-5 0.0594 1 -2.0 ALTERNATIVE:2 ENSMUSG00000096594 Igkv8-19 ENSMUST00000196599 ENSMUSP00000143247 TRANSLATION IG_V_gene stop - - 121.0 0.0 1.0 0.0 69.1 0.0 2,-2 0.8254 1 -2.0 PRINCIPAL:5 ENSMUSG00000029754 Dlx6 ENSMUST00000171311 ENSMUSP00000128585 TRANSLATION protein_coding - CCDS51719.1 1 297.0 0.0 1.5 1.4 73.7 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000029754 Dlx6 ENSMUST00000160937 ENSMUSP00000124204 TRANSLATION protein_coding - CCDS51719.1 1 297.0 0.0 1.5 1.4 73.7 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000029754 Dlx6 ENSMUST00000031768 ENSMUSP00000031768 TRANSLATION protein_coding start - 1 158.0 0.0 1.5 0.0 73.7 0.0 -4,-5 0.0433 1 -2.0 MINOR ENSMUSG00000029754 Dlx6 ENSMUST00000172943 - NO_TRANSLATION retained_intron ENSMUSG00000030292 Smco2 ENSMUST00000148099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030292 Smco2 ENSMUST00000032433 ENSMUSP00000032433 TRANSLATION protein_coding - CCDS51955.1 1 347.0 0.0 0.0 0.1 120.2 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030292 Smco2 ENSMUST00000205239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030292 Smco2 ENSMUST00000128575 - NO_TRANSLATION retained_intron ENSMUSG00000041540 Sox5 ENSMUST00000139478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041540 Sox5 ENSMUST00000077160 ENSMUSP00000076403 TRANSLATION protein_coding - CCDS51954.2 1 715.0 0.0 2.0 2.3 80.3 0.0 -4,-5 0.4637 9 12.399 MINOR ENSMUSG00000041540 Sox5 ENSMUST00000150087 - NO_TRANSLATION retained_intron ENSMUSG00000041540 Sox5 ENSMUST00000142294 - NO_TRANSLATION retained_intron ENSMUSG00000041540 Sox5 ENSMUST00000124233 ENSMUSP00000114602 TRANSLATION protein_coding stop - 5 135.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0 2 -2.0 MINOR ENSMUSG00000041540 Sox5 ENSMUST00000141102 - NO_TRANSLATION retained_intron ENSMUSG00000041540 Sox5 ENSMUST00000111748 ENSMUSP00000107377 TRANSLATION protein_coding - CCDS85183.1 1 392.0 0.0 2.0 0.1 80.3 0.0 -4,-5 0.238 4 12.0 MINOR ENSMUSG00000041540 Sox5 ENSMUST00000111749 ENSMUSP00000107378 TRANSLATION protein_coding - CCDS57469.1 1 679.0 0.0 2.0 0.1 80.3 0.0 -4,-5 0.2535 9 12.0 MINOR ENSMUSG00000041540 Sox5 ENSMUST00000149451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041540 Sox5 ENSMUST00000129050 - NO_TRANSLATION retained_intron ENSMUSG00000041540 Sox5 ENSMUST00000144289 ENSMUSP00000122786 TRANSLATION protein_coding stop - 5 184.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000041540 Sox5 ENSMUST00000111746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041540 Sox5 ENSMUST00000038815 ENSMUSP00000047567 TRANSLATION protein_coding - CCDS39702.1 1 763.0 0.0 2.0 10.8 80.3 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000041540 Sox5 ENSMUST00000170367 ENSMUSP00000133041 TRANSLATION protein_coding - - 5 714.0 0.0 2.0 2.3 80.3 0.0 -4,-5 0.2712 9 12.399 MINOR ENSMUSG00000105432 Gm43218 ENSMUST00000196275 ENSMUSP00000143685 TRANSLATION IG_V_gene stop - - 114.0 0.0 1.0 0.0 45.9 0.0 4,-1 0.8224 - -2.0 PRINCIPAL:1 ENSMUSG00000029769 Ccdc136 ENSMUST00000202726 ENSMUSP00000144577 TRANSLATION protein_coding start - 3 127.0 0.0 0.0 0.0 0.0 3.0 -4,-5 0.0392 2 -2.0 MINOR ENSMUSG00000029769 Ccdc136 ENSMUST00000145310 ENSMUSP00000145331 TRANSLATION protein_coding - CCDS85021.1 5 443.0 0.0 1.45 0.0 0.0 1.0 -4,-5 0.3152 10 6.0 ALTERNATIVE:2 ENSMUSG00000029769 Ccdc136 ENSMUST00000096084 ENSMUSP00000093789 TRANSLATION protein_coding - CCDS85019.1 5 1187.0 0.0 1.45 0.0 0.0 3.0 -4,-5 0.5572 22 6.0 ALTERNATIVE:2 ENSMUSG00000029769 Ccdc136 ENSMUST00000181464 ENSMUSP00000137673 TRANSLATION protein_coding - CCDS51736.2 1 1002.0 0.0 1.45 0.0 0.0 3.0 -4,-5 1.0 20 6.0 ALTERNATIVE:2 ENSMUSG00000029769 Ccdc136 ENSMUST00000154619 ENSMUSP00000118132 TRANSLATION protein_coding - - 5 1029.0 0.0 0.566 0.1 0.0 3.0 -4,-5 0.2065 19 2.34 MINOR ENSMUSG00000029769 Ccdc136 ENSMUST00000115275 ENSMUSP00000110930 TRANSLATION protein_coding - CCDS85020.1 5 1000.0 0.0 1.45 0.0 0.0 3.0 -4,-5 0.8029 21 6.0 PRINCIPAL:3 ENSMUSG00000029769 Ccdc136 ENSMUST00000180829 ENSMUSP00000137747 TRANSLATION protein_coding - CCDS59693.1 1 908.0 0.0 1.45 0.0 0.0 3.0 -4,-5 0.4364 20 6.0 ALTERNATIVE:2 ENSMUSG00000029769 Ccdc136 ENSMUST00000143599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029769 Ccdc136 ENSMUST00000132232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029769 Ccdc136 ENSMUST00000127611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035104 Eva1a ENSMUST00000150691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035104 Eva1a ENSMUST00000042974 ENSMUSP00000037422 TRANSLATION protein_coding - CCDS20261.1 1 156.0 0.0 1.0 4.6 193.4 2.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000035104 Eva1a ENSMUST00000150976 ENSMUSP00000122674 TRANSLATION protein_coding stop - 2 67.0 0.0 1.0 0.0 79.1 2.0 -4,-7 0.0268 - -2.0 MINOR ENSMUSG00000035104 Eva1a ENSMUST00000149023 ENSMUSP00000117345 TRANSLATION protein_coding stop - 3 155.0 0.0 1.0 4.6 191.1 2.0 -4,-7 0.7106 2 -2.0 MINOR ENSMUSG00000029844 Hoxa1 ENSMUST00000000964 ENSMUSP00000000964 TRANSLATION protein_coding - CCDS20138.1 1 336.0 0.0 1.2 6.3 76.1 0.0 -4,-5 1.0 - 13.59 PRINCIPAL:1 ENSMUSG00000029844 Hoxa1 ENSMUST00000120363 ENSMUSP00000113724 TRANSLATION protein_coding - CCDS80534.1 1 138.0 0.0 0.0 11.0 0.0 0.0 -4,-5 0.67 - 3.0 MINOR ENSMUSG00000030050 Gkn1 ENSMUST00000032129 ENSMUSP00000032129 TRANSLATION protein_coding - CCDS20319.1 1 184.0 0.0 4.0 7.9 88.8 0.0 3,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000046733 Gprc5a ENSMUST00000050104 ENSMUSP00000061062 TRANSLATION protein_coding - CCDS20644.1 1 356.0 0.0 0.48 3.8 94.8 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000029776 Hibadh ENSMUST00000149471 - NO_TRANSLATION retained_intron ENSMUSG00000029776 Hibadh ENSMUST00000031788 ENSMUSP00000031788 TRANSLATION protein_coding - CCDS20151.1 1 335.0 20.0 6.75 16.0 167.0 0.0 0,4 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000029776 Hibadh ENSMUST00000203504 - NO_TRANSLATION retained_intron ENSMUSG00000029776 Hibadh ENSMUST00000155948 - NO_TRANSLATION retained_intron ENSMUSG00000029776 Hibadh ENSMUST00000205086 - NO_TRANSLATION retained_intron ENSMUSG00000047720 Clec2m ENSMUST00000051283 ENSMUSP00000062024 TRANSLATION protein_coding - CCDS20583.1 1 189.0 0.0 3.5 0.4 63.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047720 Clec2m ENSMUST00000203159 ENSMUSP00000145310 TRANSLATION protein_coding start - 3 47.0 0.0 1.5 0.0 30.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030298 Sec13 ENSMUST00000138204 - NO_TRANSLATION retained_intron ENSMUSG00000030298 Sec13 ENSMUST00000205135 - NO_TRANSLATION retained_intron ENSMUSG00000030298 Sec13 ENSMUST00000032440 ENSMUSP00000032440 TRANSLATION protein_coding - CCDS39596.1 1 322.0 0.0 6.7 32.9 81.5 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000030298 Sec13 ENSMUST00000145979 - NO_TRANSLATION retained_intron ENSMUSG00000115091 Vmn1r22 ENSMUST00000227650 ENSMUSP00000153802 TRANSLATION protein_coding - CCDS20187.1 - 302.0 0.0 0.0 0.4 188.4 6.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115091 Vmn1r22 ENSMUST00000228322 ENSMUSP00000154301 TRANSLATION protein_coding - CCDS20187.1 - 302.0 0.0 0.0 0.4 188.4 6.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115091 Vmn1r22 ENSMUST00000228905 ENSMUSP00000154414 TRANSLATION protein_coding - - - 112.0 0.0 0.0 0.0 70.8 2.0 -4,-2 0.0028 - 0.0 MINOR ENSMUSG00000115091 Vmn1r22 ENSMUST00000228257 ENSMUSP00000154422 TRANSLATION protein_coding - CCDS20187.1 - 302.0 0.0 0.0 0.4 188.4 6.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115091 Vmn1r22 ENSMUST00000228076 ENSMUSP00000154262 TRANSLATION protein_coding - CCDS20187.1 - 302.0 0.0 0.0 0.4 188.4 6.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115091 Vmn1r22 ENSMUST00000227342 ENSMUSP00000154812 TRANSLATION protein_coding - - - 112.0 0.0 0.0 0.0 70.8 2.0 -4,-2 0.0028 - 0.0 MINOR ENSMUSG00000098715 Gm28053 ENSMUST00000204408 ENSMUSP00000145065 TRANSLATION protein_coding,RT - - 2 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000098715 Gm28053 ENSMUST00000127537 ENSMUSP00000116007 TRANSLATION protein_coding,RT - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000098715 Gm28053 ENSMUST00000204317 - NO_TRANSLATION retained_intron ENSMUSG00000029847 Slc23a4 ENSMUST00000201355 ENSMUSP00000144387 TRANSLATION protein_coding - - 5 615.0 0.0 8.75 5.6 321.7 11.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000029847 Slc23a4 ENSMUST00000144079 ENSMUSP00000122803 TRANSLATION protein_coding stop - 5 249.0 0.0 3.35 0.0 136.6 5.0 -4,-7 0.0055 2 -2.0 MINOR ENSMUSG00000029847 Slc23a4 ENSMUST00000044387 ENSMUSP00000041436 TRANSLATION protein_coding - CCDS19998.1 1 322.0 0.0 4.3 0.0 170.2 5.0 -4,-7 0.0158 3 0.0 MINOR ENSMUSG00000029847 Slc23a4 ENSMUST00000147169 ENSMUSP00000119927 TRANSLATION protein_coding start/stop - 3 227.0 0.0 4.4 0.0 209.2 6.0 0,-4 0.0061 2 -2.0 MINOR ENSMUSG00000029847 Slc23a4 ENSMUST00000134874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029832 Nfe2l3 ENSMUST00000061507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029832 Nfe2l3 ENSMUST00000160133 ENSMUSP00000124920 TRANSLATION protein_coding - - 1 264.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.001 - 0.0 MINOR ENSMUSG00000029832 Nfe2l3 ENSMUST00000005103 ENSMUSP00000005103 TRANSLATION protein_coding - CCDS20134.1 1 660.0 0.0 0.6 0.3 62.2 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048206 Dnajb8 ENSMUST00000203827 ENSMUSP00000145239 TRANSLATION nonsense_mediated_decay start - 5 93.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048206 Dnajb8 ENSMUST00000061866 ENSMUSP00000056592 TRANSLATION protein_coding - CCDS20334.1 - 227.0 0.0 2.3 8.0 99.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029826 Zc3hav1 ENSMUST00000143702 ENSMUSP00000144312 TRANSLATION protein_coding - CCDS80522.1 1 946.0 16.0 4.4 0.0 74.1 0.0 -4,-5 0.0581 17 14.286 MINOR ENSMUSG00000029826 Zc3hav1 ENSMUST00000031850 ENSMUSP00000031850 TRANSLATION protein_coding - CCDS20012.1 1 789.0 16.0 2.8 0.0 44.7 0.0 -4,-5 0.0365 16 9.318 MINOR ENSMUSG00000029826 Zc3hav1 ENSMUST00000114900 ENSMUSP00000110550 TRANSLATION protein_coding - CCDS85033.1 5 996.0 16.0 5.4 0.0 102.7 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000029826 Zc3hav1 ENSMUST00000114898 ENSMUSP00000110548 TRANSLATION protein_coding - - 1 673.0 16.0 2.8 0.0 44.7 0.0 -4,-5 0.0009 13 9.318 MINOR ENSMUSG00000030032 Wdr54 ENSMUST00000125894 ENSMUSP00000122873 TRANSLATION protein_coding - CCDS20275.1 5 334.0 0.0 7.45 25.8 0.0 0.0 -4,0 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000030032 Wdr54 ENSMUST00000146969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030032 Wdr54 ENSMUST00000032108 ENSMUSP00000159395 TRANSLATION nonsense_mediated_decay - - 5 98.0 0.0 1.55 0.0 0.0 0.0 -4,-7 0.0068 3 -2.0 MINOR ENSMUSG00000030032 Wdr54 ENSMUST00000153148 ENSMUSP00000116608 TRANSLATION protein_coding - CCDS20275.1 1 334.0 0.0 7.45 25.8 0.0 0.0 -4,0 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000029771 Irf5 ENSMUST00000004392 ENSMUSP00000004392 TRANSLATION protein_coding - CCDS19962.1 1 497.0 0.0 6.85 3.1 368.2 0.0 -4,-7 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000029771 Irf5 ENSMUST00000164922 ENSMUSP00000145299 TRANSLATION protein_coding start/stop - 5 134.0 0.0 2.05 0.0 97.4 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000029771 Irf5 ENSMUST00000167252 ENSMUSP00000126273 TRANSLATION protein_coding - CCDS80504.1 1 494.0 0.0 6.35 0.0 368.2 0.0 -4,-7 0.2594 8 10.998 MINOR ENSMUSG00000029771 Irf5 ENSMUST00000164626 ENSMUSP00000130548 TRANSLATION protein_coding stop - 3 80.0 0.0 2.05 0.0 77.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029771 Irf5 ENSMUST00000163511 ENSMUSP00000127021 TRANSLATION protein_coding - CCDS19962.1 1 497.0 0.0 6.85 3.1 368.2 0.0 -4,-7 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000029771 Irf5 ENSMUST00000171527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030244 Gys2 ENSMUST00000032371 ENSMUSP00000032371 TRANSLATION protein_coding - CCDS20683.1 1 704.0 28.0 12.3 11.9 1212.2 0.0 -1,-4 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000030244 Gys2 ENSMUST00000126939 ENSMUSP00000145213 TRANSLATION protein_coding start - 2 34.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030231 Plekha5 ENSMUST00000087622 ENSMUSP00000084904 TRANSLATION protein_coding - CCDS39688.1 5 1269.0 7.0 5.275 0.0 124.8 0.0 -4,-6 1.0 33 18.0 PRINCIPAL:1 ENSMUSG00000030231 Plekha5 ENSMUST00000204080 ENSMUSP00000144872 TRANSLATION nonsense_mediated_decay start - 5 668.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0062 20 -2.0 MINOR ENSMUSG00000030231 Plekha5 ENSMUST00000205025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030231 Plekha5 ENSMUST00000203483 ENSMUSP00000145219 TRANSLATION protein_coding start - 5 324.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0016 7 -2.0 MINOR ENSMUSG00000030231 Plekha5 ENSMUST00000213444 ENSMUSP00000149031 TRANSLATION protein_coding start - 5 596.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0047 15 -2.0 MINOR ENSMUSG00000030231 Plekha5 ENSMUST00000203774 ENSMUSP00000144832 TRANSLATION protein_coding - - 1 525.0 7.0 3.75 0.0 65.8 0.0 -4,-5 0.0 14 11.412 MINOR ENSMUSG00000030231 Plekha5 ENSMUST00000203315 - NO_TRANSLATION retained_intron ENSMUSG00000030231 Plekha5 ENSMUST00000204876 ENSMUSP00000145336 TRANSLATION protein_coding - - 5 531.0 7.0 3.75 0.0 65.8 0.0 -4,-5 0.0 14 11.412 MINOR ENSMUSG00000030231 Plekha5 ENSMUST00000203012 ENSMUSP00000145499 TRANSLATION protein_coding start - 5 770.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0141 21 -2.0 MINOR ENSMUSG00000030231 Plekha5 ENSMUST00000204528 - NO_TRANSLATION retained_intron ENSMUSG00000030231 Plekha5 ENSMUST00000203955 ENSMUSP00000144821 TRANSLATION protein_coding start/stop - 5 956.0 7.0 4.125 0.0 65.8 0.0 -4,-5 0.0123 27 -2.0 MINOR ENSMUSG00000030231 Plekha5 ENSMUST00000204145 ENSMUSP00000145457 TRANSLATION nonsense_mediated_decay - - 5 197.0 0.0 2.4 0.0 59.0 0.0 -4,-6 0.0063 3 -2.0 MINOR ENSMUSG00000030231 Plekha5 ENSMUST00000204755 - NO_TRANSLATION retained_intron ENSMUSG00000030231 Plekha5 ENSMUST00000205255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030231 Plekha5 ENSMUST00000203517 ENSMUSP00000145478 TRANSLATION protein_coding stop - 5 1000.0 7.0 5.275 0.0 124.8 0.0 -4,-6 0.2312 29 -2.0 MINOR ENSMUSG00000030231 Plekha5 ENSMUST00000205026 ENSMUSP00000144973 TRANSLATION protein_coding start - 5 662.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0054 17 -2.0 MINOR ENSMUSG00000037973 Itprid1 ENSMUST00000044729 ENSMUSP00000045332 TRANSLATION protein_coding - CCDS39493.1 1 1034.0 0.0 2.0 0.1 266.3 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000037973 Itprid1 ENSMUST00000169699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072872 Rybp ENSMUST00000101118 ENSMUSP00000098677 TRANSLATION protein_coding - CCDS39579.1 1 228.0 4.0 1.8 12.5 104.0 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000072872 Rybp ENSMUST00000205164 - NO_TRANSLATION retained_intron ENSMUSG00000072872 Rybp ENSMUST00000203410 - NO_TRANSLATION retained_intron ENSMUSG00000029757 Dync1i1 ENSMUST00000203520 - NO_TRANSLATION retained_intron ENSMUSG00000029757 Dync1i1 ENSMUST00000115555 ENSMUSP00000111217 TRANSLATION protein_coding - - 5 645.0 0.0 10.8 21.0 67.6 0.0 -4,-5 0.83 12 11.588 ALTERNATIVE:1 ENSMUSG00000029757 Dync1i1 ENSMUST00000115554 ENSMUSP00000111216 TRANSLATION protein_coding - CCDS57408.1 1 608.0 0.0 10.8 21.1 67.6 0.0 -4,-5 0.9706 13 11.604 ALTERNATIVE:1 ENSMUSG00000029757 Dync1i1 ENSMUST00000115556 ENSMUSP00000111218 TRANSLATION protein_coding - CCDS57409.1 1 617.0 0.0 10.8 12.3 67.6 0.0 -4,-5 0.8967 11 10.028 MINOR ENSMUSG00000029757 Dync1i1 ENSMUST00000153942 ENSMUSP00000121787 TRANSLATION protein_coding stop - 5 91.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000029757 Dync1i1 ENSMUST00000115559 ENSMUSP00000111221 TRANSLATION protein_coding - CCDS19903.1 1 628.0 0.0 10.8 23.3 67.6 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000029757 Dync1i1 ENSMUST00000204149 ENSMUSP00000145221 TRANSLATION protein_coding start - 3 114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030256 Bhlhe41 ENSMUST00000032386 ENSMUSP00000032386 TRANSLATION protein_coding - CCDS20697.1 1 410.0 0.0 1.4 0.1 87.4 0.0 -4,-5 0.992 1 11.088 PRINCIPAL:1 ENSMUSG00000030256 Bhlhe41 ENSMUST00000203949 - NO_TRANSLATION retained_intron ENSMUSG00000030256 Bhlhe41 ENSMUST00000111703 ENSMUSP00000107332 TRANSLATION protein_coding - CCDS71860.1 3 131.0 0.0 1.65 0.0 47.8 0.0 -4,-5 0.1976 - 9.282 MINOR ENSMUSG00000001630 Stk38l ENSMUST00000001675 ENSMUSP00000001675 TRANSLATION protein_coding - CCDS39712.1 1 464.0 17.0 8.25 36.9 235.4 0.0 -4,-7 1.0 9 21.67 PRINCIPAL:1 ENSMUSG00000001630 Stk38l ENSMUST00000111644 ENSMUSP00000107271 TRANSLATION protein_coding - - 5 471.0 17.0 8.415 33.9 207.1 0.0 -4,-7 0.7696 9 19.966 MINOR ENSMUSG00000001630 Stk38l ENSMUST00000203318 ENSMUSP00000145209 TRANSLATION protein_coding stop - 5 30.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000030138 Bms1 ENSMUST00000205207 - NO_TRANSLATION retained_intron ENSMUSG00000030138 Bms1 ENSMUST00000203444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030138 Bms1 ENSMUST00000032237 ENSMUSP00000032237 TRANSLATION protein_coding - CCDS20471.1 1 1284.0 15.0 7.78375 0.1 421.7 0.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000030172 Erc1 ENSMUST00000184320 ENSMUSP00000139207 TRANSLATION nonsense_mediated_decay start - 5 285.0 0.0 0.0 0.0 290.4 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000030172 Erc1 ENSMUST00000079582 ENSMUSP00000078534 TRANSLATION protein_coding - CCDS20476.1 1 368.0 0.0 0.0 0.0 581.2 0.0 -4,-5 0.0369 8 0.0 MINOR ENSMUSG00000030172 Erc1 ENSMUST00000185139 ENSMUSP00000139152 TRANSLATION nonsense_mediated_decay - - 5 992.0 9.0 0.0 6.9 1000.4 0.0 -4,-7 0.2397 27 -2.0 MINOR ENSMUSG00000030172 Erc1 ENSMUST00000032279 ENSMUSP00000032279 TRANSLATION protein_coding - CCDS39611.1 1 1120.0 9.0 0.0 15.8 1244.4 0.0 -4,-7 1.0 30 12.0 PRINCIPAL:3 ENSMUSG00000030172 Erc1 ENSMUST00000183880 ENSMUSP00000138823 TRANSLATION nonsense_mediated_decay - - 5 948.0 9.0 0.0 6.2 1217.1 0.0 -4,-7 0.2193 25 -2.0 MINOR ENSMUSG00000030172 Erc1 ENSMUST00000183703 ENSMUSP00000139031 TRANSLATION protein_coding - CCDS39611.1 1 1120.0 9.0 0.0 15.8 1244.4 0.0 -4,-7 1.0 30 12.0 PRINCIPAL:3 ENSMUSG00000030172 Erc1 ENSMUST00000183741 - NO_TRANSLATION retained_intron ENSMUSG00000030172 Erc1 ENSMUST00000183911 ENSMUSP00000139118 TRANSLATION protein_coding - - 5 1088.0 9.0 0.0 10.7 1223.3 0.0 -4,-7 0.6625 27 10.62 MINOR ENSMUSG00000030172 Erc1 ENSMUST00000204666 - NO_TRANSLATION retained_intron ENSMUSG00000030172 Erc1 ENSMUST00000185143 ENSMUSP00000138989 TRANSLATION nonsense_mediated_decay - - 5 720.0 9.0 0.0 0.0 407.1 0.0 -4,-7 0.0051 20 -2.0 MINOR ENSMUSG00000030172 Erc1 ENSMUST00000183872 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030172 Erc1 ENSMUST00000184864 ENSMUSP00000139256 TRANSLATION protein_coding - - 5 1116.0 9.0 0.0 15.8 1232.4 0.0 -4,-7 0.8432 29 12.0 ALTERNATIVE:1 ENSMUSG00000030172 Erc1 ENSMUST00000184838 ENSMUSP00000139030 TRANSLATION nonsense_mediated_decay - - 1 976.0 9.0 0.0 7.2 1210.3 0.0 -4,-7 0.3503 27 -2.0 MINOR ENSMUSG00000029838 Ptn ENSMUST00000101534 ENSMUSP00000099073 TRANSLATION protein_coding - CCDS20005.1 1 168.0 0.0 2.7 8.8 185.8 0.0 0,-4 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000029838 Ptn ENSMUST00000201321 ENSMUSP00000144184 TRANSLATION protein_coding - - 1 156.0 0.0 2.2 0.0 184.4 0.0 0,-4 0.0065 2 10.806 MINOR ENSMUSG00000029798 Herc6 ENSMUST00000204455 - NO_TRANSLATION retained_intron ENSMUSG00000029798 Herc6 ENSMUST00000204166 - NO_TRANSLATION retained_intron ENSMUSG00000029798 Herc6 ENSMUST00000204843 - NO_TRANSLATION retained_intron ENSMUSG00000029798 Herc6 ENSMUST00000031817 ENSMUSP00000031817 TRANSLATION protein_coding - CCDS51796.1 1 1003.0 0.0 8.845 0.0 436.1 0.0 -3,0 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000029798 Herc6 ENSMUST00000203840 ENSMUSP00000145505 TRANSLATION nonsense_mediated_decay - - 3 78.0 0.0 0.5 0.0 24.9 0.0 -3,0 0.0 - -2.0 MINOR ENSMUSG00000029798 Herc6 ENSMUST00000203506 - NO_TRANSLATION retained_intron ENSMUSG00000030137 Tuba8 ENSMUST00000032233 ENSMUSP00000032233 TRANSLATION protein_coding - CCDS39615.1 1 449.0 27.0 4.0 19.7 396.7 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000076479 Trbv26 ENSMUST00000193064 ENSMUSP00000141897 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.0 0.0 59.4 0.0 2,-1 0.8281 - -2.0 PRINCIPAL:1 ENSMUSG00000023089 Ndufa5 ENSMUST00000132588 - NO_TRANSLATION retained_intron ENSMUSG00000023089 Ndufa5 ENSMUST00000118558 ENSMUSP00000112971 TRANSLATION protein_coding - CCDS80494.1 2 77.0 0.0 2.58 6.5 0.0 0.0 -4,-7 0.1338 2 4.634 MINOR ENSMUSG00000023089 Ndufa5 ENSMUST00000023851 ENSMUSP00000023851 TRANSLATION protein_coding - CCDS19942.1 1 116.0 0.0 3.58 35.8 90.0 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000023089 Ndufa5 ENSMUST00000141274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030069 Prok2 ENSMUST00000101120 ENSMUSP00000098678 TRANSLATION protein_coding - CCDS20388.1 1 107.0 0.0 2.5 1.1 161.0 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030069 Prok2 ENSMUST00000203738 ENSMUSP00000144760 TRANSLATION protein_coding - - 1 86.0 0.0 1.5 0.0 105.1 0.0 4,-1 0.0016 - 6.246 MINOR ENSMUSG00000030069 Prok2 ENSMUST00000008273 ENSMUSP00000008273 TRANSLATION protein_coding - CCDS51864.1 3 65.0 0.0 1.5 0.0 45.2 0.0 4,-1 0.0366 - 3.6 MINOR ENSMUSG00000030069 Prok2 ENSMUST00000032152 ENSMUSP00000032152 TRANSLATION protein_coding - CCDS20389.1 1 128.0 0.0 1.75 0.4 153.0 0.0 4,-1 0.1324 - 9.72 MINOR ENSMUSG00000043832 Clec4a3 ENSMUST00000117173 ENSMUSP00000112716 TRANSLATION protein_coding - CCDS20508.1 1 237.0 5.0 4.03 3.0 82.3 1.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000043832 Clec4a3 ENSMUST00000088468 ENSMUSP00000085816 TRANSLATION protein_coding - CCDS20508.1 1 237.0 5.0 4.03 3.0 82.3 1.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000043832 Clec4a3 ENSMUST00000204427 ENSMUSP00000144856 TRANSLATION protein_coding stop - 3 109.0 0.0 1.2 0.0 0.0 1.0 -4,-5 0.0017 - -2.0 MINOR ENSMUSG00000000182 Fgf23 ENSMUST00000000186 ENSMUSP00000000186 TRANSLATION protein_coding - CCDS20562.1 1 251.0 0.0 2.8 8.1 75.7 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035378 Shq1 ENSMUST00000170667 ENSMUSP00000127797 TRANSLATION protein_coding - CCDS39580.2 1 569.0 0.0 5.0 0.3 229.9 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000035378 Shq1 ENSMUST00000089245 ENSMUSP00000086656 TRANSLATION protein_coding - - 1 458.0 0.0 3.6 0.0 70.6 0.0 -4,-5 0.0 4 3.198 MINOR ENSMUSG00000035378 Shq1 ENSMUST00000162776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035378 Shq1 ENSMUST00000113312 ENSMUSP00000108938 TRANSLATION protein_coding - - 1 569.0 0.0 5.0 0.3 229.9 0.0 -4,-5 0.6395 4 12.0 PRINCIPAL:1 ENSMUSG00000005362 Crbn ENSMUST00000113239 ENSMUSP00000108865 TRANSLATION protein_coding - CCDS39583.1 1 445.0 4.0 9.3 18.7 133.3 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:4 ENSMUSG00000005362 Crbn ENSMUST00000147087 - NO_TRANSLATION retained_intron ENSMUSG00000005362 Crbn ENSMUST00000204230 - NO_TRANSLATION retained_intron ENSMUSG00000005362 Crbn ENSMUST00000013882 ENSMUSP00000013882 TRANSLATION protein_coding - CCDS39584.1 1 444.0 4.0 9.3 18.7 133.3 0.0 -4,-5 0.9993 8 16.0 ALTERNATIVE:1 ENSMUSG00000005362 Crbn ENSMUST00000151484 ENSMUSP00000144723 TRANSLATION protein_coding stop - 3 253.0 0.0 5.05 0.0 57.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031865 Dctn1 ENSMUST00000154420 - NO_TRANSLATION retained_intron ENSMUSG00000031865 Dctn1 ENSMUST00000153793 - NO_TRANSLATION retained_intron ENSMUSG00000031865 Dctn1 ENSMUST00000130212 ENSMUSP00000115838 TRANSLATION protein_coding stop - 3 189.0 0.0 1.375 0.0 83.4 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000031865 Dctn1 ENSMUST00000113918 ENSMUSP00000109551 TRANSLATION protein_coding - - 5 1243.0 0.0 9.185 0.0 422.0 0.0 -4,0 0.2614 42 12.0 MINOR ENSMUSG00000031865 Dctn1 ENSMUST00000113913 ENSMUSP00000109546 TRANSLATION protein_coding - CCDS57432.1 1 1264.0 0.0 8.525 7.1 422.0 0.0 -4,-2 0.8524 44 12.834 MINOR ENSMUSG00000031865 Dctn1 ENSMUST00000141680 ENSMUSP00000121538 TRANSLATION protein_coding stop - 5 159.0 0.0 1.375 0.0 83.4 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000031865 Dctn1 ENSMUST00000077407 ENSMUSP00000076623 TRANSLATION protein_coding - CCDS57433.1 1 1239.0 0.0 8.525 9.1 422.0 0.0 -4,-2 0.9256 44 13.539 MINOR ENSMUSG00000031865 Dctn1 ENSMUST00000113919 ENSMUSP00000109552 TRANSLATION protein_coding - CCDS39532.1 1 1281.0 0.0 9.185 9.5 422.0 0.0 -4,0 1.0 44 15.0 PRINCIPAL:1 ENSMUSG00000031865 Dctn1 ENSMUST00000123313 - NO_TRANSLATION retained_intron ENSMUSG00000031865 Dctn1 ENSMUST00000127824 - NO_TRANSLATION retained_intron ENSMUSG00000031865 Dctn1 ENSMUST00000130917 - NO_TRANSLATION retained_intron ENSMUSG00000031865 Dctn1 ENSMUST00000113907 ENSMUSP00000109540 TRANSLATION protein_coding - - 5 1142.0 0.0 7.15 7.0 338.6 0.0 -4,-2 0.382 41 5.046 MINOR ENSMUSG00000053044 Cd8b1 ENSMUST00000065248 ENSMUSP00000070131 TRANSLATION protein_coding - CCDS39506.1 1 213.0 0.0 1.5 0.4 64.4 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000029671 Wnt16 ENSMUST00000176681 ENSMUSP00000135598 TRANSLATION protein_coding start/stop - 5 76.0 0.0 0.6 0.0 44.8 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000029671 Wnt16 ENSMUST00000031681 ENSMUSP00000031681 TRANSLATION protein_coding - CCDS19936.1 1 364.0 0.0 3.45 11.8 399.5 0.0 0,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000029671 Wnt16 ENSMUST00000148639 ENSMUSP00000135016 TRANSLATION protein_coding - - 1 225.0 0.0 1.825 0.0 175.6 0.0 0,-3 0.0012 1 2.748 MINOR ENSMUSG00000029671 Wnt16 ENSMUST00000128245 ENSMUSP00000134822 TRANSLATION protein_coding - - 1 225.0 0.0 1.7 0.0 177.4 0.0 0,-3 0.0012 1 2.502 MINOR ENSMUSG00000063762 Tas2r129 ENSMUST00000070991 ENSMUSP00000067640 TRANSLATION protein_coding - CCDS20629.1 - 320.0 0.0 0.0 0.0 243.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000025702 Marchf8 ENSMUST00000123405 ENSMUSP00000144936 TRANSLATION protein_coding - - 5 568.0 9.0 4.035 12.5 57.6 5.0 -4,-6 0.6982 2 17.028 ALTERNATIVE:1 ENSMUSG00000025702 Marchf8 ENSMUST00000156014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025702 Marchf8 ENSMUST00000079012 ENSMUSP00000078024 TRANSLATION protein_coding - CCDS20451.1 1 286.0 9.0 4.035 16.2 57.6 5.0 -4,-6 1.0 3 18.0 PRINCIPAL:2 ENSMUSG00000025702 Marchf8 ENSMUST00000203116 ENSMUSP00000145237 TRANSLATION protein_coding stop - 5 45.0 0.0 1.33 0.0 0.0 4.0 -4,-6 0.0023 - -2.0 MINOR ENSMUSG00000025702 Marchf8 ENSMUST00000123246 - NO_TRANSLATION retained_intron ENSMUSG00000025702 Marchf8 ENSMUST00000140884 ENSMUSP00000145060 TRANSLATION protein_coding stop - 5 79.0 1.0 0.375 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025702 Marchf8 ENSMUST00000101032 ENSMUSP00000098594 TRANSLATION protein_coding - CCDS20451.1 1 286.0 9.0 4.035 16.2 57.6 5.0 -4,-6 1.0 3 18.0 PRINCIPAL:2 ENSMUSG00000025702 Marchf8 ENSMUST00000205066 - NO_TRANSLATION retained_intron ENSMUSG00000025702 Marchf8 ENSMUST00000129170 ENSMUSP00000145054 TRANSLATION protein_coding stop - 3 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025702 Marchf8 ENSMUST00000204657 ENSMUSP00000145351 TRANSLATION protein_coding stop - 3 176.0 9.0 2.705 0.0 57.6 4.0 -4,-6 0.0201 1 -2.0 MINOR ENSMUSG00000025702 Marchf8 ENSMUST00000203193 ENSMUSP00000145137 TRANSLATION protein_coding - CCDS85138.1 1 247.0 9.0 4.035 0.8 57.6 5.0 -4,-2 0.3481 3 14.0 MINOR ENSMUSG00000025702 Marchf8 ENSMUST00000126376 ENSMUSP00000145270 TRANSLATION protein_coding stop - 3 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025702 Marchf8 ENSMUST00000130445 - NO_TRANSLATION retained_intron ENSMUSG00000025702 Marchf8 ENSMUST00000135901 ENSMUSP00000115510 TRANSLATION protein_coding stop - 3 232.0 9.0 4.035 0.0 57.6 5.0 -4,-7 0.0454 2 -2.0 MINOR ENSMUSG00000025702 Marchf8 ENSMUST00000204918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025702 Marchf8 ENSMUST00000127992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067610 Klri1 ENSMUST00000088046 ENSMUSP00000085362 TRANSLATION protein_coding - CCDS20593.1 1 248.0 3.0 2.5 0.4 36.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030265 Kras ENSMUST00000111710 ENSMUSP00000107339 TRANSLATION protein_coding - - 5 189.0 24.0 4.0 36.9 197.8 0.0 -4,-5 0.8306 4 18.0 ALTERNATIVE:1 ENSMUSG00000030265 Kras ENSMUST00000203147 ENSMUSP00000145294 TRANSLATION protein_coding - - 5 75.0 14.0 2.0 0.0 38.5 0.0 -4,-5 0.0003 - 1.998 MINOR ENSMUSG00000030265 Kras ENSMUST00000149314 - NO_TRANSLATION retained_intron ENSMUSG00000030265 Kras ENSMUST00000156486 ENSMUSP00000119414 TRANSLATION nonsense_mediated_decay - - 5 40.0 10.0 1.0 0.0 38.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030265 Kras ENSMUST00000123972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030265 Kras ENSMUST00000155145 ENSMUSP00000118251 TRANSLATION protein_coding stop - 3 34.0 10.0 1.0 0.0 31.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030265 Kras ENSMUST00000032399 ENSMUSP00000032399 TRANSLATION protein_coding - CCDS20693.1 1 188.0 24.0 4.0 36.9 197.6 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:4 ENSMUSG00000031668 Eif2ak3 ENSMUST00000162950 ENSMUSP00000123759 TRANSLATION protein_coding - CCDS85063.1 1 152.0 0.0 1.0 0.0 0.0 0.0 2,-3 0.0388 3 0.0 MINOR ENSMUSG00000031668 Eif2ak3 ENSMUST00000034093 ENSMUSP00000034093 TRANSLATION protein_coding - CCDS20223.1 1 1114.0 3.0 5.6 2.6 170.0 0.0 2,-3 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000031668 Eif2ak3 ENSMUST00000199251 - NO_TRANSLATION retained_intron ENSMUSG00000031668 Eif2ak3 ENSMUST00000161316 - NO_TRANSLATION retained_intron ENSMUSG00000031668 Eif2ak3 ENSMUST00000159401 - NO_TRANSLATION retained_intron ENSMUSG00000034037 Fgd5 ENSMUST00000089334 ENSMUSP00000086748 TRANSLATION protein_coding - CCDS20371.2 1 1514.0 3.0 10.96 0.1 209.0 0.0 -4,-7 0.7014 17 11.0 ALTERNATIVE:2 ENSMUSG00000034037 Fgd5 ENSMUST00000130369 - NO_TRANSLATION retained_intron ENSMUSG00000034037 Fgd5 ENSMUST00000113466 ENSMUSP00000109093 TRANSLATION protein_coding - - 1 1356.0 3.0 10.96 0.0 209.0 0.0 -4,-5 1.0 15 11.0 PRINCIPAL:2 ENSMUSG00000034037 Fgd5 ENSMUST00000146743 - NO_TRANSLATION retained_intron ENSMUSG00000107928 Gm45140 ENSMUST00000204419 ENSMUSP00000144743 TRANSLATION nonsense_mediated_decay,RT - - 5 220.0 0.0 2.57 0.0 283.1 0.0 -4,-7 0.7668 - -2.0 PRINCIPAL:5 ENSMUSG00000107928 Gm45140 ENSMUST00000204169 ENSMUSP00000145334 TRANSLATION protein_coding,RT start - 3 214.0 8.0 2.12 0.0 126.1 0.0 -4,-5 0.0321 - -2.0 ALTERNATIVE:2 ENSMUSG00000068259 Or9a7 ENSMUST00000216766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068259 Or9a7 ENSMUST00000215009 ENSMUSP00000150632 TRANSLATION protein_coding - CCDS20034.1 5 313.0 0.0 1.0 10.9 140.7 6.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068259 Or9a7 ENSMUST00000215125 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068259 Or9a7 ENSMUST00000089490 ENSMUSP00000086917 TRANSLATION protein_coding - CCDS20034.1 - 313.0 0.0 1.0 10.9 140.7 6.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029735 Tpk1 ENSMUST00000114643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029735 Tpk1 ENSMUST00000150599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029735 Tpk1 ENSMUST00000203649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029735 Tpk1 ENSMUST00000149424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029735 Tpk1 ENSMUST00000114644 ENSMUSP00000110291 TRANSLATION protein_coding - CCDS80529.1 1 194.0 22.0 5.75 1.0 183.0 0.0 -4,-5 0.0325 5 8.442 MINOR ENSMUSG00000029735 Tpk1 ENSMUST00000067888 ENSMUSP00000065631 TRANSLATION protein_coding - CCDS39474.1 1 243.0 30.0 6.75 14.3 220.1 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000030327 Necap1 ENSMUST00000203394 - NO_TRANSLATION retained_intron ENSMUSG00000030327 Necap1 ENSMUST00000203476 - NO_TRANSLATION retained_intron ENSMUSG00000030327 Necap1 ENSMUST00000203715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030327 Necap1 ENSMUST00000032477 ENSMUSP00000032477 TRANSLATION protein_coding - CCDS20505.1 1 275.0 0.0 4.55 15.3 189.6 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000076533 Igkv4-90 ENSMUST00000103334 ENSMUSP00000100135 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.1 0.0 54.2 0.0 0,-5 0.7809 1 -2.0 PRINCIPAL:1 ENSMUSG00000030041 M1ap ENSMUST00000144906 - NO_TRANSLATION retained_intron ENSMUSG00000030041 M1ap ENSMUST00000113980 ENSMUSP00000109613 TRANSLATION protein_coding - CCDS39525.1 1 529.0 0.0 0.0 2.8 0.0 0.0 -4,-2 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000030041 M1ap ENSMUST00000204891 ENSMUSP00000144948 TRANSLATION protein_coding start - 2 78.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0136 - -2.0 MINOR ENSMUSG00000076523 Igkv15-103 ENSMUST00000103324 ENSMUSP00000100125 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.1 0.0 64.0 0.0 4,-1 0.8294 - -2.0 PRINCIPAL:1 ENSMUSG00000076512 Igkv9-123 ENSMUST00000103313 ENSMUSP00000100114 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.1 0.0 49.5 0.0 3,-1 0.8234 1 -2.0 PRINCIPAL:1 ENSMUSG00000102802 Mgam2-ps ENSMUST00000215813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102802 Mgam2-ps ENSMUST00000216691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102802 Mgam2-ps ENSMUST00000195870 ENSMUSP00000158841 TRANSLATION protein_coding - - - 2379.0 4.0 37.508 0.0 1201.6 0.0 0,-4 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000030051 Aplf ENSMUST00000065997 ENSMUSP00000066232 TRANSLATION protein_coding - CCDS20324.1 1 478.0 9.0 3.45 0.0 93.4 0.0 -4,-5 0.1116 7 16.002 MINOR ENSMUSG00000030051 Aplf ENSMUST00000032130 ENSMUSP00000032130 TRANSLATION protein_coding - CCDS51839.1 1 499.0 9.0 4.45 0.0 93.4 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000030051 Aplf ENSMUST00000203209 ENSMUSP00000145358 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030051 Aplf ENSMUST00000203776 - NO_TRANSLATION retained_intron ENSMUSG00000029784 Ssmem1 ENSMUST00000031798 ENSMUSP00000031798 TRANSLATION protein_coding - CCDS19973.1 1 244.0 0.0 0.6 11.5 468.9 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029784 Ssmem1 ENSMUST00000031797 ENSMUSP00000031797 TRANSLATION protein_coding - CCDS57417.1 1 196.0 0.0 0.1 0.1 320.7 0.0 -4,-5 0.0196 - 1.002 MINOR ENSMUSG00000029784 Ssmem1 ENSMUST00000131485 ENSMUSP00000122018 TRANSLATION protein_coding stop - 2 66.0 0.0 0.1 0.0 99.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030170 Wnt5b ENSMUST00000118120 ENSMUSP00000112819 TRANSLATION protein_coding - - 1 321.0 0.0 3.0 0.0 403.0 0.0 -4,-6 0.0357 1 11.736 MINOR ENSMUSG00000030170 Wnt5b ENSMUST00000178696 ENSMUSP00000137065 TRANSLATION protein_coding - CCDS20474.2 1 359.0 0.0 3.132 9.9 403.0 0.0 3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000030170 Wnt5b ENSMUST00000119369 ENSMUSP00000112448 TRANSLATION protein_coding - - 1 372.0 0.0 3.132 0.4 403.0 0.0 1,-2 0.205 1 12.0 MINOR ENSMUSG00000030170 Wnt5b ENSMUST00000117171 ENSMUSP00000113188 TRANSLATION protein_coding - CCDS20474.2 1 359.0 0.0 3.132 9.9 403.0 0.0 3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000063171 Rps4l ENSMUST00000204242 ENSMUSP00000159836 TRANSLATION protein_coding - - - 262.0 0.0 1.0 36.9 365.6 0.0 -,- 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000046178 Nxph1 ENSMUST00000162942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046178 Nxph1 ENSMUST00000060369 ENSMUSP00000060926 TRANSLATION protein_coding - CCDS39426.1 1 271.0 0.0 0.8 35.1 375.1 0.0 2,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000046178 Nxph1 ENSMUST00000160300 ENSMUSP00000125274 TRANSLATION protein_coding - CCDS39426.1 1 271.0 0.0 0.8 35.1 375.1 0.0 2,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000094973 Eif4a3l1 ENSMUST00000077886 ENSMUSP00000133154 TRANSLATION protein_coding - CCDS51939.1 - 411.0 13.0 3.75 9.1 247.4 0.0 -4,-7 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000094973 Eif4a3l1 ENSMUST00000204966 ENSMUSP00000145166 TRANSLATION protein_coding stop - 5 266.0 13.0 2.0 0.0 105.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000094973 Eif4a3l1 ENSMUST00000204530 ENSMUSP00000144809 TRANSLATION protein_coding - CCDS51939.1 1 411.0 13.0 3.75 9.1 247.4 0.0 -4,-7 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000029708 Gcc1 ENSMUST00000064377 ENSMUSP00000067395 TRANSLATION protein_coding - CCDS19951.1 1 778.0 0.0 0.0 12.5 56.2 0.0 -4,-5 1.0 21 9.0 PRINCIPAL:1 ENSMUSG00000029708 Gcc1 ENSMUST00000170767 ENSMUSP00000130379 TRANSLATION protein_coding stop - 2 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.007 - -2.0 MINOR ENSMUSG00000029708 Gcc1 ENSMUST00000090511 ENSMUSP00000087997 TRANSLATION protein_coding - CCDS19951.1 1 778.0 0.0 0.0 12.5 56.2 0.0 -4,-5 1.0 21 9.0 PRINCIPAL:1 ENSMUSG00000029708 Gcc1 ENSMUST00000165455 ENSMUSP00000132415 TRANSLATION protein_coding start - 3 194.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 5 -2.0 MINOR ENSMUSG00000030302 Atp2b2 ENSMUST00000144507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030302 Atp2b2 ENSMUST00000101044 ENSMUSP00000098605 TRANSLATION protein_coding - CCDS85130.1 1 1243.0 3.0 12.891 7.9 482.7 4.0 -4,-5 0.8277 32 13.108 PRINCIPAL:3 ENSMUSG00000030302 Atp2b2 ENSMUST00000154738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030302 Atp2b2 ENSMUST00020183810 ENSMUSP00001091666 TRANSLATION protein_coding start - - 120.0 0.0 0.5 0.0 63.8 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000030302 Atp2b2 ENSMUST00000152831 ENSMUSP00000138165 TRANSLATION nonsense_mediated_decay - - 1 1154.0 3.0 12.25 5.3 450.5 4.0 -4,-5 0.3249 31 -2.0 MINOR ENSMUSG00000030302 Atp2b2 ENSMUST00000135199 - NO_TRANSLATION retained_intron ENSMUSG00000030302 Atp2b2 ENSMUST00000205052 ENSMUSP00000145174 TRANSLATION protein_coding - - 1 1194.0 3.0 12.25 14.1 483.5 4.0 -4,-5 0.8625 31 13.716 ALTERNATIVE:1 ENSMUSG00000030302 Atp2b2 ENSMUST00000089003 ENSMUSP00000086398 TRANSLATION protein_coding - CCDS20433.1 1 1198.0 3.0 12.25 14.1 483.5 4.0 -4,-5 1.0 31 13.716 ALTERNATIVE:1 ENSMUSG00000030302 Atp2b2 ENSMUST00000101045 ENSMUSP00000098606 TRANSLATION protein_coding - CCDS20433.1 1 1198.0 3.0 12.25 14.1 483.5 4.0 -4,-5 1.0 31 13.716 ALTERNATIVE:1 ENSMUSG00000033720 Sfxn5 ENSMUST00000203035 - NO_TRANSLATION retained_intron ENSMUSG00000033720 Sfxn5 ENSMUST00000149362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033720 Sfxn5 ENSMUST00000059034 ENSMUSP00000054648 TRANSLATION protein_coding - - 1 302.0 0.0 7.76 0.0 339.9 1.0 -4,-6 0.0021 8 4.212 MINOR ENSMUSG00000033720 Sfxn5 ENSMUST00000148179 - NO_TRANSLATION retained_intron ENSMUSG00000033720 Sfxn5 ENSMUST00000045846 ENSMUSP00000041872 TRANSLATION protein_coding - CCDS20291.1 1 342.0 0.0 9.51 0.1 411.4 2.0 -4,-6 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000033720 Sfxn5 ENSMUST00000113788 ENSMUSP00000109418 TRANSLATION protein_coding - - 1 108.0 0.0 2.1 0.0 52.3 0.0 -4,-6 0.0 3 0.0 MINOR ENSMUSG00000033720 Sfxn5 ENSMUST00000134392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033720 Sfxn5 ENSMUST00000113787 ENSMUSP00000109417 TRANSLATION protein_coding - - 2 169.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0007 - 0.0 MINOR ENSMUSG00000033720 Sfxn5 ENSMUST00000138489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090631 Or2r2 ENSMUST00000057251 ENSMUSP00000060839 TRANSLATION protein_coding - CCDS20073.1 - 312.0 0.0 1.0 10.7 166.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096715 Igkv3-4 ENSMUST00000103401 ENSMUSP00000100202 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.1 71.7 0.0 4,-1 0.8213 1 -2.0 PRINCIPAL:1 ENSMUSG00000004902 Slc25a18 ENSMUST00000112682 ENSMUSP00000108302 TRANSLATION protein_coding - CCDS39614.1 1 320.0 0.0 6.15 0.1 205.5 0.0 -4,-6 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000041377 Ninj2 ENSMUST00000112711 ENSMUSP00000108331 TRANSLATION protein_coding - CCDS39612.1 1 143.0 0.0 0.4 4.9 109.0 2.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000041377 Ninj2 ENSMUST00000035244 ENSMUSP00000046306 TRANSLATION protein_coding - CCDS85148.1 2 133.0 0.0 0.4 0.0 109.0 2.0 -4,-2 0.2228 - 12.0 MINOR ENSMUSG00000115644 Vmn1r17 ENSMUST00000228294 ENSMUSP00000153928 TRANSLATION protein_coding - - - 254.0 0.0 0.0 0.0 162.2 4.0 -4,-7 0.0191 - 0.0 MINOR ENSMUSG00000115644 Vmn1r17 ENSMUST00000228156 ENSMUSP00000154305 TRANSLATION protein_coding - - - 254.0 0.0 0.0 0.0 162.2 4.0 -4,-7 0.0191 - 0.0 MINOR ENSMUSG00000115644 Vmn1r17 ENSMUST00000227966 ENSMUSP00000154103 TRANSLATION protein_coding - CCDS20180.1 - 303.0 0.0 0.0 0.4 176.8 6.0 -2,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115644 Vmn1r17 ENSMUST00000227186 ENSMUSP00000154334 TRANSLATION protein_coding - CCDS20180.1 - 303.0 0.0 0.0 0.4 176.8 6.0 -2,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115644 Vmn1r17 ENSMUST00000228342 ENSMUSP00000154129 TRANSLATION protein_coding - CCDS20180.1 - 303.0 0.0 0.0 0.4 176.8 6.0 -2,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000030281 Il17rc ENSMUST00000203668 - NO_TRANSLATION retained_intron ENSMUSG00000030281 Il17rc ENSMUST00000204632 ENSMUSP00000145348 TRANSLATION protein_coding start/stop - 3 62.0 0.0 1.63 0.0 43.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030281 Il17rc ENSMUST00000204447 ENSMUSP00000145420 TRANSLATION protein_coding start/stop - 3 142.0 0.0 2.91 0.0 147.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030281 Il17rc ENSMUST00000058300 ENSMUSP00000055343 TRANSLATION protein_coding - CCDS20422.1 1 674.0 0.0 10.18 0.0 580.9 1.0 -1,-4 0.881 2 11.556 PRINCIPAL:1 ENSMUSG00000030281 Il17rc ENSMUST00000205208 ENSMUSP00000145038 TRANSLATION protein_coding start - 1 579.0 0.0 9.43 0.0 588.3 1.0 -4,-7 0.0741 2 -2.0 MINOR ENSMUSG00000030046 Bmp10 ENSMUST00000032125 ENSMUSP00000032125 TRANSLATION protein_coding - CCDS51838.1 1 421.0 0.0 0.8 17.6 182.5 0.0 3,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000076571 Igkv5-37 ENSMUST00000103372 ENSMUSP00000100173 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 56.8 0.0 3,-2 0.8234 1 -2.0 PRINCIPAL:1 ENSMUSG00000059486 Kbtbd2 ENSMUST00000114323 ENSMUSP00000109962 TRANSLATION protein_coding - CCDS51790.1 1 623.0 0.0 1.8 23.8 228.6 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000059486 Kbtbd2 ENSMUST00000151308 ENSMUSP00000122266 TRANSLATION protein_coding stop - 3 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0208 - -2.0 MINOR ENSMUSG00000059486 Kbtbd2 ENSMUST00000114321 ENSMUSP00000109960 TRANSLATION protein_coding - CCDS51790.1 1 623.0 0.0 1.8 23.8 228.6 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000059486 Kbtbd2 ENSMUST00000124994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057697 Vmn1r53 ENSMUST00000076086 ENSMUSP00000075455 TRANSLATION protein_coding - CCDS20355.1 - 310.0 0.0 0.0 0.1 454.8 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000058295 Prp2 ENSMUST00000076061 ENSMUSP00000075435 TRANSLATION protein_coding - CCDS51931.1 5 316.0 0.0 0.0 0.0 0.0 0.0 3,-1 0.9687 - 0.0 PRINCIPAL:1 ENSMUSG00000058295 Prp2 ENSMUST00000178961 ENSMUSP00000135942 TRANSLATION protein_coding - CCDS51931.1 1 316.0 0.0 0.0 0.0 0.0 0.0 3,-1 0.9687 - 0.0 PRINCIPAL:1 ENSMUSG00000030341 Tnfrsf1a ENSMUST00000125880 ENSMUSP00000121968 TRANSLATION nonsense_mediated_decay start - 3 107.0 0.0 3.0 0.0 65.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030341 Tnfrsf1a ENSMUST00000130257 ENSMUSP00000115991 TRANSLATION protein_coding stop - 5 65.0 3.0 0.8 0.0 0.0 0.0 3,-2 0.0026 - -2.0 MINOR ENSMUSG00000030341 Tnfrsf1a ENSMUST00000131434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030341 Tnfrsf1a ENSMUST00000032491 ENSMUSP00000032491 TRANSLATION protein_coding - CCDS20550.1 1 454.0 2.0 7.75 0.1 147.2 1.0 3,-2 1.0 4 14.001 PRINCIPAL:1 ENSMUSG00000030341 Tnfrsf1a ENSMUST00000144524 ENSMUSP00000117470 TRANSLATION protein_coding start/stop - 2 295.0 0.0 4.2 0.0 28.7 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000030341 Tnfrsf1a ENSMUST00000134803 - NO_TRANSLATION retained_intron ENSMUSG00000005892 Trh ENSMUST00000006046 ENSMUSP00000006046 TRANSLATION protein_coding - CCDS20375.1 1 256.0 0.0 0.0 0.1 111.1 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000009145 Dqx1 ENSMUST00000204803 ENSMUSP00000144697 TRANSLATION non_stop_decay stop - 5 324.0 10.0 2.18 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000009145 Dqx1 ENSMUST00000077502 ENSMUSP00000076708 TRANSLATION protein_coding - CCDS20268.1 5 718.0 10.0 7.03 1.5 101.9 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000062190 Lancl2 ENSMUST00000050077 ENSMUSP00000052146 TRANSLATION protein_coding - CCDS20185.1 1 450.0 12.0 7.616 4.9 352.0 0.0 -4,-5 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000062190 Lancl2 ENSMUST00000153777 ENSMUSP00000121377 TRANSLATION nonsense_mediated_decay start - 1 441.0 12.0 7.616 0.0 352.0 0.0 -4,-5 0.093 17 -2.0 MINOR ENSMUSG00000062190 Lancl2 ENSMUST00000072954 ENSMUSP00000072723 TRANSLATION protein_coding - CCDS20185.1 1 450.0 12.0 7.616 4.9 352.0 0.0 -4,-5 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000032667 Pon2 ENSMUST00000123838 - NO_TRANSLATION retained_intron ENSMUSG00000032667 Pon2 ENSMUST00000057792 ENSMUSP00000062670 TRANSLATION protein_coding - CCDS19900.1 1 354.0 5.0 7.75 26.4 136.6 0.0 0,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000032667 Pon2 ENSMUST00000203882 - NO_TRANSLATION retained_intron ENSMUSG00000032667 Pon2 ENSMUST00000135342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030086 Chchd6 ENSMUST00000113550 ENSMUSP00000109179 TRANSLATION protein_coding - CCDS51846.1 5 245.0 0.0 2.75 0.0 95.8 0.0 -4,-5 0.0071 12 5.574 MINOR ENSMUSG00000030086 Chchd6 ENSMUST00000032172 ENSMUSP00000032172 TRANSLATION protein_coding - CCDS39557.1 1 273.0 0.0 3.5 0.3 177.9 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000030086 Chchd6 ENSMUST00000204970 - NO_TRANSLATION retained_intron ENSMUSG00000030086 Chchd6 ENSMUST00000204654 ENSMUSP00000145207 TRANSLATION nonsense_mediated_decay start - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0006 - -2.0 MINOR ENSMUSG00000038271 Iffo1 ENSMUST00000139071 - NO_TRANSLATION retained_intron ENSMUSG00000038271 Iffo1 ENSMUST00000144364 ENSMUSP00000116701 TRANSLATION nonsense_mediated_decay - - 1 372.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0288 3 -2.0 MINOR ENSMUSG00000038271 Iffo1 ENSMUST00000150417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038271 Iffo1 ENSMUST00000117675 ENSMUSP00000113088 TRANSLATION protein_coding - CCDS39634.1 1 562.0 0.0 2.0 5.5 0.0 0.0 -4,-6 0.9402 3 7.666 ALTERNATIVE:1 ENSMUSG00000038271 Iffo1 ENSMUST00000148835 ENSMUSP00000115080 TRANSLATION protein_coding start - 1 381.0 0.0 2.0 0.0 0.0 0.0 -4,0 0.0551 1 -2.0 MINOR ENSMUSG00000038271 Iffo1 ENSMUST00000153006 - NO_TRANSLATION retained_intron ENSMUSG00000038271 Iffo1 ENSMUST00000141230 - NO_TRANSLATION retained_intron ENSMUSG00000038271 Iffo1 ENSMUST00000150474 - NO_TRANSLATION retained_intron ENSMUSG00000038271 Iffo1 ENSMUST00000135559 - NO_TRANSLATION retained_intron ENSMUSG00000038271 Iffo1 ENSMUST00000119527 ENSMUSP00000113376 TRANSLATION protein_coding - CCDS39635.1 1 559.0 0.0 2.0 6.4 0.0 0.0 -4,-6 1.0 3 8.0 PRINCIPAL:4 ENSMUSG00000030144 Clec4d ENSMUST00000203421 - NO_TRANSLATION retained_intron ENSMUSG00000030144 Clec4d ENSMUST00000032240 ENSMUSP00000032240 TRANSLATION protein_coding - CCDS20513.1 1 219.0 10.0 4.6 0.4 71.8 1.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030144 Clec4d ENSMUST00000204826 ENSMUSP00000145134 TRANSLATION nonsense_mediated_decay - - 1 79.0 0.0 1.1 0.0 0.0 1.0 -4,-7 0.0028 - -2.0 MINOR ENSMUSG00000000627 Sema4f ENSMUST00000125579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000627 Sema4f ENSMUST00000203911 - NO_TRANSLATION retained_intron ENSMUSG00000000627 Sema4f ENSMUST00000203271 ENSMUSP00000144745 TRANSLATION nonsense_mediated_decay start - 5 29.0 0.0 0.15 0.0 0.0 0.0 0,-5 0.0 - -2.0 MINOR ENSMUSG00000000627 Sema4f ENSMUST00000000641 ENSMUSP00000000641 TRANSLATION protein_coding - CCDS20264.1 1 777.0 0.0 7.725 2.8 453.2 0.0 1,-2 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000014542 Clec4f ENSMUST00000014686 ENSMUSP00000014686 TRANSLATION protein_coding - CCDS20281.1 1 548.0 9.0 3.0 0.4 92.1 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000014542 Clec4f ENSMUST00000137647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051256 Jagn1 ENSMUST00000101070 ENSMUSP00000098631 TRANSLATION protein_coding - CCDS20419.1 1 183.0 0.0 2.8 36.2 230.2 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000051256 Jagn1 ENSMUST00000204287 - NO_TRANSLATION retained_intron ENSMUSG00000051256 Jagn1 ENSMUST00000204254 ENSMUSP00000145000 TRANSLATION protein_coding - CCDS85121.1 1 67.0 0.0 0.8 0.1 54.8 0.0 -4,-7 0.014 1 1.716 MINOR ENSMUSG00000061762 Tac1 ENSMUST00000185130 ENSMUSP00000139032 TRANSLATION protein_coding stop - 5 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0102 - -2.0 MINOR ENSMUSG00000061762 Tac1 ENSMUST00000090679 ENSMUSP00000088175 TRANSLATION protein_coding - - 5 112.0 0.0 1.83 6.8 0.0 0.0 4,-1 0.3086 1 6.434 MINOR ENSMUSG00000061762 Tac1 ENSMUST00000184481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061762 Tac1 ENSMUST00000185187 ENSMUSP00000139347 TRANSLATION protein_coding - CCDS19906.1 1 130.0 0.0 2.13 8.7 0.0 0.0 4,-1 0.7497 2 7.7 ALTERNATIVE:1 ENSMUSG00000061762 Tac1 ENSMUST00000184986 ENSMUSP00000138818 TRANSLATION protein_coding - CCDS80486.1 1 115.0 0.0 1.63 19.1 0.0 0.0 4,-1 1.0 2 8.59 PRINCIPAL:2 ENSMUSG00000043605 Or2a7 ENSMUST00000216179 ENSMUSP00000149893 TRANSLATION protein_coding - CCDS20089.1 5 310.0 0.0 1.0 12.5 199.0 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043605 Or2a7 ENSMUST00000059512 ENSMUSP00000053813 TRANSLATION protein_coding - CCDS20089.1 - 310.0 0.0 1.0 12.5 199.0 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058250 Tas2r138 ENSMUST00000076565 ENSMUSP00000075876 TRANSLATION protein_coding - CCDS20038.1 - 331.0 0.0 0.0 6.6 210.2 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000030110 Ret ENSMUST00000088790 ENSMUSP00000086169 TRANSLATION protein_coding - CCDS39608.1 1 1073.0 19.0 14.59 2.2 374.2 1.0 0,-4 0.6763 13 18.666 MINOR ENSMUSG00000030110 Ret ENSMUST00000032201 ENSMUSP00000032201 TRANSLATION protein_coding - CCDS20470.1 1 1115.0 19.0 14.59 4.6 374.2 1.0 0,-4 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000071553 Cpa2 ENSMUST00000126426 - NO_TRANSLATION retained_intron ENSMUSG00000071553 Cpa2 ENSMUST00000133009 - NO_TRANSLATION retained_intron ENSMUSG00000071553 Cpa2 ENSMUST00000131137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071553 Cpa2 ENSMUST00000142653 - NO_TRANSLATION retained_intron ENSMUSG00000071553 Cpa2 ENSMUST00000096066 ENSMUSP00000093771 TRANSLATION protein_coding - CCDS19974.1 5 417.0 9.0 9.8 31.0 390.1 0.0 2,-1 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000071553 Cpa2 ENSMUST00000146936 - NO_TRANSLATION retained_intron ENSMUSG00000071553 Cpa2 ENSMUST00000144282 - NO_TRANSLATION retained_intron ENSMUSG00000071553 Cpa2 ENSMUST00000123588 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004285 Atp6v1f ENSMUST00000143101 ENSMUSP00000116986 TRANSLATION protein_coding start - 3 100.0 0.0 1.0 0.0 63.9 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000004285 Atp6v1f ENSMUST00000004396 ENSMUSP00000004396 TRANSLATION protein_coding - CCDS19960.1 1 119.0 0.0 2.0 31.9 111.8 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000004285 Atp6v1f ENSMUST00000149646 ENSMUSP00000145062 TRANSLATION protein_coding - - 5 71.0 0.0 1.0 0.0 65.5 0.0 -4,-5 0.0 3 6.222 MINOR ENSMUSG00000029706 Pax4 ENSMUST00000031718 ENSMUSP00000031718 TRANSLATION protein_coding - CCDS39447.1 1 349.0 0.0 4.65 4.1 257.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029706 Pax4 ENSMUST00000174194 ENSMUSP00000134470 TRANSLATION protein_coding - - 5 307.0 0.0 4.05 0.0 233.7 0.0 -4,-5 0.0046 - 9.384 MINOR ENSMUSG00000029706 Pax4 ENSMUST00000174423 - NO_TRANSLATION retained_intron ENSMUSG00000029706 Pax4 ENSMUST00000174036 - NO_TRANSLATION retained_intron ENSMUSG00000029706 Pax4 ENSMUST00000164519 ENSMUSP00000131301 TRANSLATION protein_coding - CCDS51732.1 1 336.0 0.0 4.55 0.0 257.3 0.0 -4,-5 0.1678 - 11.802 MINOR ENSMUSG00000029706 Pax4 ENSMUST00000171089 ENSMUSP00000126000 TRANSLATION protein_coding - CCDS51731.1 1 335.0 0.0 4.55 0.0 257.3 0.0 -4,-5 0.1681 - 11.802 MINOR ENSMUSG00000094006 Igkv4-59 ENSMUST00000103354 ENSMUSP00000100155 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 58.0 0.0 0,-3 0.7904 - -2.0 PRINCIPAL:1 ENSMUSG00000076586 Igkv8-21 ENSMUST00000103387 ENSMUSP00000100188 TRANSLATION IG_V_gene stop - - 120.0 0.0 1.0 0.0 65.1 0.0 3,-2 0.8234 1 -2.0 PRINCIPAL:1 ENSMUSG00000059187 Tafa1 ENSMUST00000075080 ENSMUSP00000074589 TRANSLATION protein_coding - CCDS39574.1 1 133.0 0.0 2.0 20.5 158.0 0.0 2,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000059187 Tafa1 ENSMUST00000122120 ENSMUSP00000113152 TRANSLATION protein_coding - CCDS39574.1 1 133.0 0.0 2.0 20.5 158.0 0.0 2,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000059187 Tafa1 ENSMUST00000125951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059187 Tafa1 ENSMUST00000129844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041698 Slco1a1 ENSMUST00000171651 - NO_TRANSLATION retained_intron ENSMUSG00000041698 Slco1a1 ENSMUST00000042119 ENSMUSP00000037022 TRANSLATION protein_coding - CCDS39691.1 1 670.0 0.0 0.0 7.0 625.3 11.0 -4,-5 1.0 11 8.0 PRINCIPAL:1 ENSMUSG00000041698 Slco1a1 ENSMUST00000168119 ENSMUSP00000132386 TRANSLATION protein_coding - - 1 616.0 0.0 0.0 0.0 625.3 10.0 -4,-5 0.0887 9 6.0 MINOR ENSMUSG00000008845 Cd163 ENSMUST00000032234 ENSMUSP00000032234 TRANSLATION protein_coding - CCDS20516.1 1 1121.0 14.0 4.58 0.0 856.5 0.0 -3,-6 1.0 25 14.0 PRINCIPAL:2 ENSMUSG00000008845 Cd163 ENSMUST00000112541 ENSMUSP00000108160 TRANSLATION protein_coding - CCDS51905.1 1 1159.0 14.0 4.58 0.0 856.5 0.0 -3,-6 0.5624 25 14.0 ALTERNATIVE:2 ENSMUSG00000008845 Cd163 ENSMUST00000203210 - NO_TRANSLATION retained_intron ENSMUSG00000095630 Igkv6-23 ENSMUST00000103386 ENSMUSP00000100187 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 55.6 0.0 2,-2 0.8264 1 -2.0 PRINCIPAL:1 ENSMUSG00000046323 Dppa3 ENSMUST00000123429 ENSMUSP00000115252 TRANSLATION protein_coding start - 5 141.0 0.0 0.0 0.0 85.9 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000046323 Dppa3 ENSMUST00000049644 ENSMUSP00000062832 TRANSLATION protein_coding - CCDS20500.1 1 150.0 0.0 0.0 0.1 118.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095574 Trbv12-1 ENSMUST00000103267 ENSMUSP00000100083 TRANSLATION TR_V_gene stop - - 124.0 0.0 1.0 0.0 55.4 0.0 1,-2 0.8264 - -2.0 PRINCIPAL:1 ENSMUSG00000063455 D630045J12Rik ENSMUST00000117556 ENSMUSP00000112939 TRANSLATION protein_coding - - 5 1799.0 0.0 1.08 0.0 945.4 0.0 -4,-5 1.0 19 8.0 PRINCIPAL:4 ENSMUSG00000063455 D630045J12Rik ENSMUST00000149557 - NO_TRANSLATION retained_intron ENSMUSG00000063455 D630045J12Rik ENSMUST00000169256 ENSMUSP00000130121 TRANSLATION protein_coding - CCDS51749.1 5 1940.0 0.0 1.08 0.1 945.4 0.0 -1,2 0.9168 19 8.0 ALTERNATIVE:2 ENSMUSG00000063455 D630045J12Rik ENSMUST00000127925 - NO_TRANSLATION retained_intron ENSMUSG00000063455 D630045J12Rik ENSMUST00000152464 - NO_TRANSLATION retained_intron ENSMUSG00000063455 D630045J12Rik ENSMUST00000144973 - NO_TRANSLATION retained_intron ENSMUSG00000030319 Cand2 ENSMUST00000075995 ENSMUSP00000075377 TRANSLATION protein_coding - CCDS20442.1 1 1235.0 0.0 11.09 8.1 204.1 0.0 -4,-5 1.0 27 15.0 PRINCIPAL:1 ENSMUSG00000059900 Tmem40 ENSMUST00000112946 ENSMUSP00000108568 TRANSLATION protein_coding - - 1 266.0 0.0 0.0 0.0 236.8 1.0 -3,-6 0.0398 2 6.0 MINOR ENSMUSG00000059900 Tmem40 ENSMUST00000166254 ENSMUSP00000131697 TRANSLATION protein_coding - CCDS39601.1 5 225.0 0.0 0.0 0.3 236.8 1.0 -4,-5 0.1982 1 6.0 MINOR ENSMUSG00000059900 Tmem40 ENSMUST00000127728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059900 Tmem40 ENSMUST00000151849 - NO_TRANSLATION retained_intron ENSMUSG00000059900 Tmem40 ENSMUST00000170625 ENSMUSP00000130407 TRANSLATION protein_coding - CCDS51879.1 3 200.0 0.0 0.0 4.3 236.8 1.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000059900 Tmem40 ENSMUST00000072933 ENSMUSP00000072704 TRANSLATION protein_coding - CCDS39601.1 1 225.0 0.0 0.0 0.3 236.8 1.0 -4,-5 0.1982 1 6.0 MINOR ENSMUSG00000030007 Cct7 ENSMUST00000204612 ENSMUSP00000144701 TRANSLATION protein_coding start/stop - 3 79.0 0.0 1.5 0.0 37.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030007 Cct7 ENSMUST00000205096 - NO_TRANSLATION retained_intron ENSMUSG00000030007 Cct7 ENSMUST00000204489 ENSMUSP00000144919 TRANSLATION nonsense_mediated_decay - - 5 83.0 4.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030007 Cct7 ENSMUST00000204592 ENSMUSP00000144893 TRANSLATION protein_coding - - 5 502.0 18.0 10.0 0.0 384.8 0.0 -4,-5 0.0056 21 6.162 MINOR ENSMUSG00000030007 Cct7 ENSMUST00000032078 ENSMUSP00000032078 TRANSLATION protein_coding - CCDS20295.1 1 544.0 23.0 11.25 10.0 537.9 0.0 -4,-5 1.0 23 21.0 PRINCIPAL:1 ENSMUSG00000030007 Cct7 ENSMUST00000205143 - NO_TRANSLATION retained_intron ENSMUSG00000030007 Cct7 ENSMUST00000205094 - NO_TRANSLATION retained_intron ENSMUSG00000004263 Atn1 ENSMUST00000088357 ENSMUSP00000085695 TRANSLATION protein_coding - CCDS20526.1 1 1175.0 0.0 0.0 0.3 787.2 0.0 -4,-5 1.0 11 6.0 PRINCIPAL:1 ENSMUSG00000004263 Atn1 ENSMUST00000146872 ENSMUSP00000123560 TRANSLATION protein_coding stop - 2 183.0 0.0 0.0 0.0 114.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000004263 Atn1 ENSMUST00000133577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030064 Frmd4b ENSMUST00000146191 - NO_TRANSLATION retained_intron ENSMUSG00000030064 Frmd4b ENSMUST00000143698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030064 Frmd4b ENSMUST00000113359 ENSMUSP00000108986 TRANSLATION protein_coding - CCDS85101.1 1 989.0 0.0 5.375 4.0 382.0 0.0 -4,-5 0.5907 6 8.764 MINOR ENSMUSG00000030064 Frmd4b ENSMUST00000152385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030064 Frmd4b ENSMUST00000138301 - NO_TRANSLATION retained_intron ENSMUSG00000030064 Frmd4b ENSMUST00000113353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030064 Frmd4b ENSMUST00000126899 - NO_TRANSLATION retained_intron ENSMUSG00000030064 Frmd4b ENSMUST00000032146 ENSMUSP00000032146 TRANSLATION protein_coding - CCDS85102.1 1 1035.0 0.0 5.375 14.9 382.0 0.0 -4,-7 0.9125 6 11.54 ALTERNATIVE:1 ENSMUSG00000030064 Frmd4b ENSMUST00000155326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030064 Frmd4b ENSMUST00000113355 ENSMUSP00000108982 TRANSLATION protein_coding - CCDS39577.1 1 981.0 0.0 5.375 16.7 382.0 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000030064 Frmd4b ENSMUST00000124050 ENSMUSP00000145240 TRANSLATION protein_coding stop - 5 91.0 0.0 2.33 0.0 52.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030064 Frmd4b ENSMUST00000203486 - NO_TRANSLATION retained_intron ENSMUSG00000030064 Frmd4b ENSMUST00000142589 - NO_TRANSLATION retained_intron ENSMUSG00000044378 Slc15a5 ENSMUST00000050132 - NO_TRANSLATION retained_intron ENSMUSG00000044378 Slc15a5 ENSMUST00000171804 ENSMUSP00000129239 TRANSLATION protein_coding - - 5 566.0 0.0 3.119 0.1 74.0 14.0 -4,-5 0.7747 - 12.0 PRINCIPAL:1 ENSMUSG00000044378 Slc15a5 ENSMUST00000150278 ENSMUSP00000145205 TRANSLATION protein_coding start - 5 69.0 0.0 0.08 0.0 0.0 2.0 -4,-7 0.0008 - -2.0 MINOR ENSMUSG00000044378 Slc15a5 ENSMUST00000111873 ENSMUSP00000107504 TRANSLATION protein_coding start - 1 228.0 0.0 1.444 0.0 42.4 8.0 -4,-7 0.0042 - -2.0 MINOR ENSMUSG00000044378 Slc15a5 ENSMUST00000154461 - NO_TRANSLATION retained_intron ENSMUSG00000044378 Slc15a5 ENSMUST00000141280 ENSMUSP00000145169 TRANSLATION protein_coding start - 2 109.0 0.0 1.039 0.0 32.9 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000071506 Tmem139 ENSMUST00000095987 ENSMUSP00000100590 TRANSLATION protein_coding - CCDS51757.1 2 214.0 0.0 0.8 4.0 25.7 0.0 -3,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000071506 Tmem139 ENSMUST00000238607 - NO_TRANSLATION retained_intron ENSMUSG00000094478 Igkv3-3 ENSMUST00000103402 ENSMUSP00000100203 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.1 67.5 0.0 4,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000051397 Tacstd2 ENSMUST00000058178 ENSMUSP00000060099 TRANSLATION protein_coding - CCDS20221.1 - 317.0 0.0 0.6 2.6 41.5 0.0 3,-2 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000054966 Lmntd1 ENSMUST00000148739 ENSMUSP00000120740 TRANSLATION nonsense_mediated_decay - - 1 267.0 0.0 2.2 0.0 55.7 0.0 -4,-1 0.0856 - -2.0 MINOR ENSMUSG00000054966 Lmntd1 ENSMUST00000149666 ENSMUSP00000123226 TRANSLATION protein_coding stop - 3 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054966 Lmntd1 ENSMUST00000111706 ENSMUSP00000107335 TRANSLATION protein_coding - - 1 363.0 0.0 2.2 0.0 56.0 0.0 -4,-5 0.7548 - 8.0 PRINCIPAL:2 ENSMUSG00000054966 Lmntd1 ENSMUST00000111708 ENSMUSP00000107337 TRANSLATION protein_coding - CCDS20695.1 1 413.0 0.0 2.2 0.1 56.0 0.0 -4,-5 0.3709 - 8.0 ALTERNATIVE:2 ENSMUSG00000054966 Lmntd1 ENSMUST00000144829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054966 Lmntd1 ENSMUST00000142122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057666 Gapdh ENSMUST00000182277 ENSMUSP00000138295 TRANSLATION protein_coding stop - 2 57.0 10.0 1.66 0.0 74.1 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000057666 Gapdh ENSMUST00000182115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057666 Gapdh ENSMUST00000144588 - NO_TRANSLATION retained_intron ENSMUSG00000057666 Gapdh ENSMUST00000118875 ENSMUSP00000113213 TRANSLATION protein_coding - CCDS51913.1 1 333.0 22.0 7.16 36.9 369.0 0.0 -4,-1 1.0 1 21.604 PRINCIPAL:1 ENSMUSG00000057666 Gapdh ENSMUST00000147954 - NO_TRANSLATION retained_intron ENSMUSG00000057666 Gapdh ENSMUST00000183272 ENSMUSP00000138508 TRANSLATION protein_coding stop - 3 280.0 12.0 5.5 0.0 306.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057666 Gapdh ENSMUST00000182670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057666 Gapdh ENSMUST00000182052 ENSMUSP00000138403 TRANSLATION protein_coding stop - 2 55.0 1.0 1.83 0.0 64.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057666 Gapdh ENSMUST00000182464 - NO_TRANSLATION retained_intron ENSMUSG00000057666 Gapdh ENSMUST00000144205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057666 Gapdh ENSMUST00000117757 ENSMUSP00000113942 TRANSLATION protein_coding - CCDS80613.1 1 359.0 22.0 7.358 0.0 369.0 0.0 -4,-1 0.1788 1 18.0 MINOR ENSMUSG00000057666 Gapdh ENSMUST00000192506 - NO_TRANSLATION retained_intron ENSMUSG00000057666 Gapdh ENSMUST00000073605 ENSMUSP00000073289 TRANSLATION protein_coding - CCDS51913.1 1 333.0 22.0 7.16 36.9 369.0 0.0 -4,-1 1.0 1 21.604 PRINCIPAL:1 ENSMUSG00000000416 Cttnbp2 ENSMUST00000141581 ENSMUSP00000123162 TRANSLATION protein_coding start/stop - 5 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000416 Cttnbp2 ENSMUST00000146775 ENSMUSP00000119383 TRANSLATION protein_coding start - 1 1139.0 0.0 3.55 0.0 90.2 0.0 -4,-7 0.107 8 -2.0 MINOR ENSMUSG00000000416 Cttnbp2 ENSMUST00000139557 - NO_TRANSLATION retained_intron ENSMUSG00000000416 Cttnbp2 ENSMUST00000129669 ENSMUSP00000116878 TRANSLATION protein_coding stop - 5 160.0 0.0 -0.3 0.0 104.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000000416 Cttnbp2 ENSMUST00000090601 ENSMUSP00000088089 TRANSLATION protein_coding - CCDS39432.1 1 1648.0 0.0 3.0 0.4 202.3 0.0 -4,-5 1.0 26 10.902 PRINCIPAL:1 ENSMUSG00000000416 Cttnbp2 ENSMUST00000142963 ENSMUSP00000122590 TRANSLATION protein_coding stop - 3 94.0 0.0 0.0 0.0 104.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000000416 Cttnbp2 ENSMUST00000140416 - NO_TRANSLATION retained_intron ENSMUSG00000000416 Cttnbp2 ENSMUST00000148602 ENSMUSP00000118432 TRANSLATION nonsense_mediated_decay - - 1 630.0 0.0 -0.3 0.0 112.1 0.0 -4,-5 0.0043 23 -2.0 MINOR ENSMUSG00000000416 Cttnbp2 ENSMUST00000152499 - NO_TRANSLATION retained_intron ENSMUSG00000076580 Igkv8-27 ENSMUST00000103381 ENSMUSP00000100182 TRANSLATION IG_V_gene start/stop - - 100.0 0.0 1.0 0.0 68.2 0.0 -4,-6 0.0556 2 -2.0 ALTERNATIVE:2 ENSMUSG00000076580 Igkv8-27 ENSMUST00000197272 ENSMUSP00000142998 TRANSLATION IG_V_gene stop - - 120.0 0.0 1.0 0.1 68.2 0.0 2,-2 0.8249 2 -2.0 PRINCIPAL:5 ENSMUSG00000029819 Npy ENSMUST00000031843 ENSMUSP00000031843 TRANSLATION protein_coding - CCDS39488.1 1 97.0 0.0 1.0 30.9 68.6 0.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030054 Gp9 ENSMUST00000032133 ENSMUSP00000032133 TRANSLATION protein_coding - CCDS20328.1 1 177.0 0.0 0.48 0.7 61.4 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000004264 Phb2 ENSMUST00000143000 - NO_TRANSLATION retained_intron ENSMUSG00000004264 Phb2 ENSMUST00000147974 ENSMUSP00000119316 TRANSLATION protein_coding start/stop - 3 104.0 0.0 2.608 0.0 41.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000004264 Phb2 ENSMUST00000124779 - NO_TRANSLATION retained_intron ENSMUSG00000004264 Phb2 ENSMUST00000004375 ENSMUSP00000004375 TRANSLATION protein_coding - CCDS39627.1 5 299.0 0.0 7.47 20.0 81.5 0.0 -4,-6 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000004264 Phb2 ENSMUST00000145447 - NO_TRANSLATION retained_intron ENSMUSG00000004264 Phb2 ENSMUST00000130279 ENSMUSP00000121535 TRANSLATION protein_coding start - 5 157.0 0.0 3.91 0.0 0.0 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000004264 Phb2 ENSMUST00000150847 - NO_TRANSLATION retained_intron ENSMUSG00000004264 Phb2 ENSMUST00000129422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076563 Igkv5-48 ENSMUST00000103364 ENSMUSP00000100165 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 51.8 0.0 4,-1 0.8257 1 -2.0 PRINCIPAL:1 ENSMUSG00000076476 Trbv20 ENSMUST00000103277 ENSMUSP00000100093 TRANSLATION TR_V_gene stop - - 111.0 0.0 1.0 0.0 42.8 0.0 3,-4 0.8132 - -2.0 PRINCIPAL:1 ENSMUSG00000025821 Zfp282 ENSMUST00000061890 ENSMUSP00000053643 TRANSLATION protein_coding - CCDS20100.1 1 666.0 20.0 0.6 0.8 188.6 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000025821 Zfp282 ENSMUST00000125957 - NO_TRANSLATION retained_intron ENSMUSG00000068232 Vmn1r42 ENSMUST00000227279 ENSMUSP00000154442 TRANSLATION protein_coding - CCDS57439.1 - 329.0 0.0 0.0 0.1 431.1 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068232 Vmn1r42 ENSMUST00000226436 ENSMUSP00000154788 TRANSLATION protein_coding - CCDS57439.1 - 329.0 0.0 0.0 0.1 431.1 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068232 Vmn1r42 ENSMUST00000089419 ENSMUSP00000086840 TRANSLATION protein_coding - CCDS57439.1 - 329.0 0.0 0.0 0.1 431.1 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000040112 Mrps35 ENSMUST00000137556 ENSMUSP00000144920 TRANSLATION protein_coding stop - 5 85.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000040112 Mrps35 ENSMUST00000036111 ENSMUSP00000048348 TRANSLATION protein_coding - CCDS51959.1 1 320.0 0.0 5.5 8.3 69.1 0.0 -4,0 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000040112 Mrps35 ENSMUST00000143204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040112 Mrps35 ENSMUST00000123139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040112 Mrps35 ENSMUST00000149660 - NO_TRANSLATION retained_intron ENSMUSG00000068323 Slc4a5 ENSMUST00000141863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068323 Slc4a5 ENSMUST00000113899 ENSMUSP00000109532 TRANSLATION protein_coding - - 5 1041.0 0.0 10.235 1.7 1111.0 7.0 -4,-5 0.3936 1 11.618 MINOR ENSMUSG00000068323 Slc4a5 ENSMUST00000122897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068323 Slc4a5 ENSMUST00000039212 ENSMUSP00000041007 TRANSLATION protein_coding - CCDS51819.1 5 1001.0 0.0 10.235 0.0 1111.0 7.0 -4,-5 0.4082 1 11.25 MINOR ENSMUSG00000068323 Slc4a5 ENSMUST00000131432 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068323 Slc4a5 ENSMUST00000113900 ENSMUSP00000109533 TRANSLATION protein_coding - - 5 1116.0 0.0 10.61 4.8 1111.0 7.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000029707 Fscn3 ENSMUST00000147036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029707 Fscn3 ENSMUST00000031719 ENSMUSP00000031719 TRANSLATION protein_coding - CCDS39446.1 1 498.0 0.0 6.0 10.2 176.9 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000000058 Cav2 ENSMUST00000115462 ENSMUSP00000111122 TRANSLATION protein_coding - - 5 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000000058 Cav2 ENSMUST00000115459 ENSMUSP00000111119 TRANSLATION protein_coding - CCDS71727.1 1 113.0 0.0 1.0 0.0 129.0 1.0 -4,-5 0.0163 4 5.418 MINOR ENSMUSG00000000058 Cav2 ENSMUST00000000058 ENSMUSP00000000058 TRANSLATION protein_coding - CCDS19923.1 1 162.0 0.0 2.0 19.1 188.7 1.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000059430 Actg2 ENSMUST00000205926 ENSMUSP00000146302 TRANSLATION protein_coding stop - 3 195.0 15.0 4.25 0.0 209.9 0.0 -4,-5 0.0001 1 -2.0 MINOR ENSMUSG00000059430 Actg2 ENSMUST00000141904 ENSMUSP00000120936 TRANSLATION protein_coding stop - 2 221.0 22.0 5.58 0.0 270.5 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000059430 Actg2 ENSMUST00000075161 ENSMUSP00000074658 TRANSLATION protein_coding - CCDS51822.1 1 376.0 35.0 8.58 36.9 495.2 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000059430 Actg2 ENSMUST00000124933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059430 Actg2 ENSMUST00000121731 ENSMUSP00000113552 TRANSLATION protein_coding - CCDS51822.1 5 376.0 35.0 8.58 36.9 495.2 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000059430 Actg2 ENSMUST00000152029 ENSMUSP00000121577 TRANSLATION protein_coding stop - 2 195.0 16.0 4.75 0.0 258.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043119 Or2a5 ENSMUST00000214529 ENSMUSP00000148884 TRANSLATION protein_coding - CCDS20082.1 5 310.0 0.0 1.0 12.5 206.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043119 Or2a5 ENSMUST00000213952 ENSMUSP00000150419 TRANSLATION protein_coding - CCDS20082.1 5 310.0 0.0 1.0 12.5 206.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043119 Or2a5 ENSMUST00000058668 ENSMUSP00000059195 TRANSLATION protein_coding - CCDS20082.1 - 310.0 0.0 1.0 12.5 206.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038665 Dgki ENSMUST00000042075 ENSMUSP00000047858 TRANSLATION protein_coding - - 5 899.0 15.0 5.2475 0.0 349.0 0.0 -4,-5 0.0982 12 14.0 ALTERNATIVE:2 ENSMUSG00000038665 Dgki ENSMUST00000101532 ENSMUSP00000099071 TRANSLATION protein_coding - CCDS39459.1 1 1071.0 15.0 5.2475 2.6 349.0 0.0 -2,1 1.0 14 15.0 PRINCIPAL:2 ENSMUSG00000038665 Dgki ENSMUST00000136457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038665 Dgki ENSMUST00000090314 ENSMUSP00000087788 TRANSLATION protein_coding - CCDS85032.1 5 1050.0 15.0 5.2475 1.5 349.0 0.0 -2,1 0.7192 14 14.312 ALTERNATIVE:2 ENSMUSG00000038665 Dgki ENSMUST00000138286 ENSMUSP00000138628 TRANSLATION nonsense_mediated_decay - - 5 841.0 15.0 2.4105 0.0 303.7 0.0 -2,1 0.0237 13 -2.0 MINOR ENSMUSG00000038665 Dgki ENSMUST00000143046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038665 Dgki ENSMUST00000150300 ENSMUSP00000138457 TRANSLATION nonsense_mediated_decay - - 5 591.0 15.0 2.4105 0.1 212.3 0.0 -2,1 0.0029 6 -2.0 MINOR ENSMUSG00000038665 Dgki ENSMUST00000146656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071521 Try10 ENSMUST00000072103 ENSMUSP00000071976 TRANSLATION protein_coding - CCDS20046.1 1 246.0 21.0 4.0 33.9 270.9 0.0 4,-1 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000029571 Tmem106b ENSMUST00000142798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029571 Tmem106b ENSMUST00000142211 ENSMUSP00000122392 TRANSLATION protein_coding stop - 2 70.0 3.0 0.0 0.0 46.5 0.0 -4,-5 0.0008 4 -2.0 MINOR ENSMUSG00000029571 Tmem106b ENSMUST00000136742 - NO_TRANSLATION retained_intron ENSMUSG00000029571 Tmem106b ENSMUST00000031556 ENSMUSP00000031556 TRANSLATION protein_coding - CCDS19914.1 1 275.0 3.0 4.33 24.2 393.8 1.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000029571 Tmem106b ENSMUST00000122916 ENSMUSP00000122107 TRANSLATION protein_coding stop - 5 185.0 3.0 2.0 0.0 264.5 1.0 -4,-5 0.0009 7 -2.0 MINOR ENSMUSG00000029571 Tmem106b ENSMUST00000124234 ENSMUSP00000123208 TRANSLATION protein_coding stop - 5 93.0 3.0 0.0 0.0 102.1 0.0 -4,-5 0.0011 5 -2.0 MINOR ENSMUSG00000014748 Tex261 ENSMUST00000138192 - NO_TRANSLATION retained_intron ENSMUSG00000014748 Tex261 ENSMUST00000125614 - NO_TRANSLATION retained_intron ENSMUSG00000014748 Tex261 ENSMUST00000137773 - NO_TRANSLATION retained_intron ENSMUSG00000014748 Tex261 ENSMUST00000014892 ENSMUSP00000014892 TRANSLATION protein_coding - CCDS20285.1 1 196.0 0.0 4.25 30.3 0.0 0.0 2,-3 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000057497 Fam136a ENSMUST00000204893 ENSMUSP00000145530 TRANSLATION nonsense_mediated_decay - - 3 86.0 0.0 1.882 0.0 90.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000057497 Fam136a ENSMUST00000071492 ENSMUSP00000071426 TRANSLATION protein_coding - CCDS20309.1 1 138.0 0.0 2.75 0.0 154.8 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000057497 Fam136a ENSMUST00000203237 - NO_TRANSLATION retained_intron ENSMUSG00000069678 Pcgf1 ENSMUST00000204211 - NO_TRANSLATION retained_intron ENSMUSG00000069678 Pcgf1 ENSMUST00000176027 ENSMUSP00000135664 TRANSLATION nonsense_mediated_decay - - 5 106.0 0.0 2.54 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000069678 Pcgf1 ENSMUST00000176372 - NO_TRANSLATION retained_intron ENSMUSG00000069678 Pcgf1 ENSMUST00000176089 ENSMUSP00000135268 TRANSLATION protein_coding - - 5 108.0 0.0 3.165 0.0 42.8 0.0 -4,-5 0.0004 - 2.898 MINOR ENSMUSG00000069678 Pcgf1 ENSMUST00000092614 ENSMUSP00000090277 TRANSLATION protein_coding - CCDS20270.1 1 247.0 8.0 6.45 2.2 88.7 0.0 -4,-7 0.3288 1 18.256 MINOR ENSMUSG00000069678 Pcgf1 ENSMUST00000177177 ENSMUSP00000135291 TRANSLATION protein_coding - - 1 176.0 0.0 4.87 0.1 52.1 0.0 -4,-5 0.0014 1 6.36 MINOR ENSMUSG00000069678 Pcgf1 ENSMUST00000176100 ENSMUSP00000135882 TRANSLATION protein_coding stop - 3 52.0 2.0 1.08 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000069678 Pcgf1 ENSMUST00000165164 ENSMUSP00000130614 TRANSLATION protein_coding - - 1 259.0 8.0 6.45 19.7 88.7 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000067591 Klra3 ENSMUST00000111998 ENSMUSP00000107629 TRANSLATION protein_coding - CCDS20601.1 1 266.0 3.0 4.8 0.1 231.3 1.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067591 Klra3 ENSMUST00000088017 ENSMUSP00000085333 TRANSLATION protein_coding - CCDS20601.1 1 266.0 3.0 4.8 0.1 231.3 1.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000076472 Trbv15 ENSMUST00000103273 ENSMUSP00000100089 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.1 0.0 53.2 0.0 1,-2 0.824 - -2.0 PRINCIPAL:1 ENSMUSG00000030225 Dera ENSMUST00000087675 ENSMUSP00000084959 TRANSLATION protein_coding - CCDS20666.1 1 318.0 9.0 8.41 34.2 95.4 0.0 -4,-7 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000030225 Dera ENSMUST00000203340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030225 Dera ENSMUST00000205060 - NO_TRANSLATION retained_intron ENSMUSG00000030225 Dera ENSMUST00000203046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030225 Dera ENSMUST00000204976 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030225 Dera ENSMUST00000204779 ENSMUSP00000144841 TRANSLATION protein_coding start - 5 152.0 9.0 4.08 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000030225 Dera ENSMUST00000203754 - NO_TRANSLATION retained_intron ENSMUSG00000030225 Dera ENSMUST00000203136 - NO_TRANSLATION retained_intron ENSMUSG00000030225 Dera ENSMUST00000203693 ENSMUSP00000144935 TRANSLATION protein_coding - - 1 290.0 3.0 6.33 0.0 86.4 0.0 -4,-7 0.0031 6 9.276 MINOR ENSMUSG00000030225 Dera ENSMUST00000203216 ENSMUSP00000145264 TRANSLATION protein_coding - - 5 116.0 8.0 3.41 0.0 28.4 0.0 -4,-5 0.0 4 7.122 MINOR ENSMUSG00000030225 Dera ENSMUST00000203507 ENSMUSP00000144819 TRANSLATION protein_coding start - 5 74.0 7.0 2.41 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030225 Dera ENSMUST00000204723 ENSMUSP00000145030 TRANSLATION protein_coding start - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000030225 Dera ENSMUST00000204356 ENSMUSP00000145106 TRANSLATION protein_coding start - 5 96.0 3.0 2.91 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000030225 Dera ENSMUST00000204100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030225 Dera ENSMUST00000204544 - NO_TRANSLATION TEC ENSMUSG00000058706 0610030E20Rik ENSMUST00000205472 - NO_TRANSLATION retained_intron ENSMUSG00000058706 0610030E20Rik ENSMUST00000205578 - NO_TRANSLATION retained_intron ENSMUSG00000058706 0610030E20Rik ENSMUST00000077783 ENSMUSP00000076957 TRANSLATION protein_coding - CCDS51808.1 1 166.0 0.0 0.0 13.6 220.7 0.0 -4,-5 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000058706 0610030E20Rik ENSMUST00000204152 - NO_TRANSLATION retained_intron ENSMUSG00000033508 Asprv1 ENSMUST00000043400 ENSMUSP00000046121 TRANSLATION protein_coding - - - 256.0 0.0 0.0 0.3 43.5 0.0 -4,-7 0.6958 4 6.0 PRINCIPAL:1 ENSMUSG00000029700 Slc13a1 ENSMUST00000031713 ENSMUSP00000031713 TRANSLATION protein_coding - CCDS19940.1 1 594.0 0.0 6.29 9.8 329.4 0.0 0,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029700 Slc13a1 ENSMUST00000174594 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029700 Slc13a1 ENSMUST00000177412 - NO_TRANSLATION retained_intron ENSMUSG00000029700 Slc13a1 ENSMUST00000176692 - NO_TRANSLATION retained_intron ENSMUSG00000029695 Aass ENSMUST00000149864 ENSMUSP00000115079 TRANSLATION protein_coding start/stop - 3 209.0 16.0 4.0 0.0 87.5 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000029695 Aass ENSMUST00000031707 ENSMUSP00000031707 TRANSLATION protein_coding - CCDS19937.1 1 926.0 24.0 10.6225 25.9 463.7 0.0 -4,0 1.0 29 22.0 PRINCIPAL:1 ENSMUSG00000029695 Aass ENSMUST00000138063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029695 Aass ENSMUST00000152280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059639 Clec4a4 ENSMUST00000079379 ENSMUSP00000078351 TRANSLATION protein_coding - CCDS20509.1 1 236.0 5.0 3.9 3.8 74.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000029994 Anxa4 ENSMUST00000155456 ENSMUSP00000117378 TRANSLATION protein_coding start - 5 215.0 18.0 6.5 0.0 233.8 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000029994 Anxa4 ENSMUST00000129772 - NO_TRANSLATION retained_intron ENSMUSG00000029994 Anxa4 ENSMUST00000204398 ENSMUSP00000144961 TRANSLATION protein_coding stop - 3 258.0 24.0 8.08 0.0 260.4 0.0 -4,-5 0.0007 13 -2.0 MINOR ENSMUSG00000029994 Anxa4 ENSMUST00000127152 ENSMUSP00000138194 TRANSLATION nonsense_mediated_decay - - 5 196.0 13.0 5.88 0.0 169.1 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000029994 Anxa4 ENSMUST00000135921 - NO_TRANSLATION retained_intron ENSMUSG00000029994 Anxa4 ENSMUST00000204441 ENSMUSP00000145421 TRANSLATION protein_coding stop - 5 273.0 24.0 8.58 0.0 285.2 0.0 -4,-5 0.001 14 -2.0 MINOR ENSMUSG00000029994 Anxa4 ENSMUST00000113675 ENSMUSP00000109305 TRANSLATION protein_coding - CCDS39543.1 1 319.0 27.0 9.83 15.4 347.3 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000029994 Anxa4 ENSMUST00000123732 ENSMUSP00000115346 TRANSLATION protein_coding stop - 5 254.0 21.0 7.83 0.0 201.1 0.0 -4,-5 0.0002 14 -2.0 MINOR ENSMUSG00000029994 Anxa4 ENSMUST00000001187 ENSMUSP00000001187 TRANSLATION protein_coding - CCDS39543.1 1 319.0 27.0 9.83 15.4 347.3 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000030165 Klrd1 ENSMUST00000119520 ENSMUSP00000113399 TRANSLATION protein_coding - - 5 198.0 0.0 4.064 0.0 54.7 3.0 -1,-5 0.0536 - 11.13 MINOR ENSMUSG00000030165 Klrd1 ENSMUST00000112063 ENSMUSP00000107694 TRANSLATION protein_coding - CCDS57456.1 1 179.0 0.0 3.864 5.2 64.0 3.0 -1,-5 1.0 - 13.598 PRINCIPAL:1 ENSMUSG00000030165 Klrd1 ENSMUST00000159077 - NO_TRANSLATION retained_intron ENSMUSG00000030165 Klrd1 ENSMUST00000203965 ENSMUSP00000144712 TRANSLATION nonsense_mediated_decay start - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030165 Klrd1 ENSMUST00000159804 ENSMUSP00000123703 TRANSLATION nonsense_mediated_decay - - 5 70.0 0.0 0.8 0.0 0.0 3.0 -1,-5 0.004 - -2.0 MINOR ENSMUSG00000030160 Tmem52b ENSMUST00000204741 ENSMUSP00000145486 TRANSLATION protein_coding - - 1 40.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000030160 Tmem52b ENSMUST00000203160 - NO_TRANSLATION retained_intron ENSMUSG00000030160 Tmem52b ENSMUST00000032263 ENSMUSP00000032263 TRANSLATION protein_coding - CCDS39659.1 1 186.0 0.0 0.0 0.0 199.0 0.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030160 Tmem52b ENSMUST00000204692 - NO_TRANSLATION retained_intron ENSMUSG00000030161 Gabarapl1 ENSMUST00000204487 ENSMUSP00000145078 TRANSLATION protein_coding - - 1 97.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0004 - 0.0 MINOR ENSMUSG00000030161 Gabarapl1 ENSMUST00000204956 ENSMUSP00000145175 TRANSLATION protein_coding - CCDS51923.1 3 117.0 0.0 3.5 36.9 165.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000030161 Gabarapl1 ENSMUST00000204639 ENSMUSP00000144803 TRANSLATION protein_coding stop - 2 47.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000030161 Gabarapl1 ENSMUST00000032264 ENSMUSP00000032264 TRANSLATION protein_coding - CCDS51923.1 1 117.0 0.0 3.5 36.9 165.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000030278 Cidec ENSMUST00000133348 ENSMUSP00000122068 TRANSLATION protein_coding stop - 3 83.0 0.0 1.8 0.0 37.4 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000030278 Cidec ENSMUST00000113091 ENSMUSP00000108714 TRANSLATION protein_coding - - 3 249.0 0.0 3.4 8.6 101.0 0.0 -4,-2 0.906 4 11.0 ALTERNATIVE:1 ENSMUSG00000030278 Cidec ENSMUST00000032416 ENSMUSP00000032416 TRANSLATION protein_coding - CCDS20418.1 1 239.0 0.0 3.4 8.2 101.0 0.0 -4,-2 1.0 4 10.841 PRINCIPAL:4 ENSMUSG00000030278 Cidec ENSMUST00000113089 ENSMUSP00000108712 TRANSLATION protein_coding - CCDS20418.1 1 239.0 0.0 3.4 8.2 101.0 0.0 -4,-2 1.0 4 10.841 PRINCIPAL:4 ENSMUSG00000076547 Igkv4-70 ENSMUST00000103348 ENSMUSP00000100149 TRANSLATION IG_V_gene stop - - 116.0 0.0 1.0 0.0 59.6 0.0 0,-3 0.7904 - -2.0 PRINCIPAL:1 ENSMUSG00000029866 Kel ENSMUST00000192118 ENSMUSP00000141251 TRANSLATION protein_coding start/stop - 5 286.0 3.0 3.997 0.0 156.6 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029866 Kel ENSMUST00000141502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029866 Kel ENSMUST00000153760 - NO_TRANSLATION retained_intron ENSMUSG00000029866 Kel ENSMUST00000194597 ENSMUSP00000142058 TRANSLATION protein_coding start - 3 69.0 0.0 1.3 0.0 41.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029866 Kel ENSMUST00000031899 ENSMUSP00000031899 TRANSLATION protein_coding - CCDS20055.1 1 713.0 4.0 9.526 2.1 453.3 0.0 -4,-7 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000079293 Clec7a ENSMUST00000184581 ENSMUSP00000139167 TRANSLATION protein_coding - CCDS85170.1 3 199.0 6.0 3.0 6.3 65.8 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000079293 Clec7a ENSMUST00000184861 - NO_TRANSLATION retained_intron ENSMUSG00000079293 Clec7a ENSMUST00000195589 - NO_TRANSLATION protein_coding_LoF ENSMUSG00000052852 Reep1 ENSMUST00000212631 ENSMUSP00000148678 TRANSLATION protein_coding - - 5 143.0 0.0 1.416 1.2 42.6 3.0 0,-5 0.025 - 1.272 MINOR ENSMUSG00000052852 Reep1 ENSMUST00000121469 ENSMUSP00000112662 TRANSLATION protein_coding - CCDS51807.1 1 201.0 0.0 3.816 6.6 91.8 3.0 0,-4 1.0 6 10.0 PRINCIPAL:2 ENSMUSG00000052852 Reep1 ENSMUST00000212792 ENSMUSP00000148341 TRANSLATION protein_coding - - 5 284.0 0.0 3.816 4.3 91.8 3.0 0,-4 0.5752 8 9.178 ALTERNATIVE:2 ENSMUSG00000076587 Igkv6-20 ENSMUST00000103388 ENSMUSP00000100189 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.0 0.0 64.8 0.0 3,-2 0.8306 - -2.0 PRINCIPAL:1 ENSMUSG00000030223 Ptpro ENSMUST00000203255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030223 Ptpro ENSMUST00000167679 ENSMUSP00000127112 TRANSLATION protein_coding - CCDS51943.1 1 1198.0 11.0 8.0 0.0 338.6 1.0 4,-1 0.6754 8 14.0 ALTERNATIVE:2 ENSMUSG00000030223 Ptpro ENSMUST00000167002 ENSMUSP00000131764 TRANSLATION protein_coding - CCDS51944.1 1 405.0 11.0 8.0 2.0 281.4 1.0 -2,-5 0.3796 4 13.75 MINOR ENSMUSG00000030223 Ptpro ENSMUST00000077115 ENSMUSP00000076364 TRANSLATION protein_coding - CCDS20664.1 1 1226.0 11.0 8.0 0.0 338.6 1.0 4,-1 1.0 8 14.0 PRINCIPAL:2 ENSMUSG00000030223 Ptpro ENSMUST00000204780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030223 Ptpro ENSMUST00000203914 ENSMUSP00000144870 TRANSLATION protein_coding - CCDS85176.1 1 377.0 11.0 8.0 1.1 281.4 1.0 -2,-5 0.2833 4 12.85 MINOR ENSMUSG00000030223 Ptpro ENSMUST00000203010 - NO_TRANSLATION retained_intron ENSMUSG00000030223 Ptpro ENSMUST00000203127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040250 Ints13 ENSMUST00000139546 - NO_TRANSLATION retained_intron ENSMUSG00000040250 Ints13 ENSMUST00000203545 ENSMUSP00000145229 TRANSLATION protein_coding start - 5 327.0 0.0 2.5 0.0 364.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000040250 Ints13 ENSMUST00000139979 ENSMUSP00000122279 TRANSLATION protein_coding start - 2 230.0 0.0 1.0 0.0 196.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000040250 Ints13 ENSMUST00000131662 ENSMUSP00000118000 TRANSLATION protein_coding start/stop - 5 395.0 0.0 5.8575 0.0 570.0 0.0 -4,-7 0.0072 8 -2.0 MINOR ENSMUSG00000040250 Ints13 ENSMUST00000205078 - NO_TRANSLATION retained_intron ENSMUSG00000040250 Ints13 ENSMUST00000152994 - NO_TRANSLATION retained_intron ENSMUSG00000040250 Ints13 ENSMUST00000204234 - NO_TRANSLATION retained_intron ENSMUSG00000040250 Ints13 ENSMUST00000126996 - NO_TRANSLATION retained_intron ENSMUSG00000040250 Ints13 ENSMUST00000032427 ENSMUSP00000032427 TRANSLATION protein_coding - CCDS39710.1 1 732.0 0.0 8.2675 0.4 959.8 0.0 -4,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000040250 Ints13 ENSMUST00000135277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040250 Ints13 ENSMUST00000132963 - NO_TRANSLATION retained_intron ENSMUSG00000003031 Cdkn1b ENSMUST00000003115 ENSMUSP00000003115 TRANSLATION protein_coding - CCDS20642.1 1 197.0 0.0 0.8 15.8 76.6 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000003031 Cdkn1b ENSMUST00000204807 ENSMUSP00000145056 TRANSLATION protein_coding - CCDS20642.1 5 197.0 0.0 0.8 15.8 76.6 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000003031 Cdkn1b ENSMUST00000067327 ENSMUSP00000065832 TRANSLATION protein_coding - CCDS20642.1 1 197.0 0.0 0.8 15.8 76.6 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000007458 M6pr ENSMUST00000123093 - NO_TRANSLATION retained_intron ENSMUSG00000007458 M6pr ENSMUST00000007602 ENSMUSP00000007602 TRANSLATION protein_coding - CCDS20493.1 1 278.0 9.0 5.8 14.0 598.9 1.0 3,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000007458 M6pr ENSMUST00000112610 ENSMUSP00000108229 TRANSLATION protein_coding - CCDS20493.1 5 278.0 9.0 5.8 14.0 598.9 1.0 3,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000107705 Gm45062 ENSMUST00000162564 ENSMUSP00000125725 TRANSLATION nonsense_mediated_decay,RT - - 2 131.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.6695 - -2.0 PRINCIPAL:1 ENSMUSG00000079477 Rab7 ENSMUST00000113598 ENSMUSP00000109228 TRANSLATION protein_coding - CCDS39552.1 1 207.0 22.0 5.75 36.9 195.8 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000079477 Rab7 ENSMUST00000113600 ENSMUSP00000109230 TRANSLATION protein_coding - CCDS39552.1 1 207.0 22.0 5.75 36.9 195.8 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000079477 Rab7 ENSMUST00000113596 ENSMUSP00000109226 TRANSLATION protein_coding - CCDS39552.1 1 207.0 22.0 5.75 36.9 195.8 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000079477 Rab7 ENSMUST00000095048 ENSMUSP00000092658 TRANSLATION protein_coding - CCDS39552.1 1 207.0 22.0 5.75 36.9 195.8 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000079477 Rab7 ENSMUST00000204126 ENSMUSP00000145097 TRANSLATION protein_coding stop - 3 98.0 15.0 2.75 0.0 124.8 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000079477 Rab7 ENSMUST00000113597 ENSMUSP00000109227 TRANSLATION protein_coding - CCDS39552.1 1 207.0 22.0 5.75 36.9 195.8 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000079477 Rab7 ENSMUST00000203674 ENSMUSP00000145215 TRANSLATION protein_coding - - 5 88.0 15.0 2.25 0.0 99.1 0.0 -4,-7 0.0 6 1.53 MINOR ENSMUSG00000043541 Dnai7 ENSMUST00000128070 - NO_TRANSLATION retained_intron ENSMUSG00000043541 Dnai7 ENSMUST00000111728 ENSMUSP00000107357 TRANSLATION protein_coding - - 2 679.0 0.0 0.0 0.0 198.3 0.0 -4,-5 0.1206 4 2.0 ALTERNATIVE:2 ENSMUSG00000043541 Dnai7 ENSMUST00000203558 - NO_TRANSLATION retained_intron ENSMUSG00000043541 Dnai7 ENSMUST00000060797 ENSMUSP00000062279 TRANSLATION protein_coding - CCDS39705.1 1 730.0 0.0 0.0 0.1 198.3 0.0 -4,-5 0.3423 4 2.0 ALTERNATIVE:2 ENSMUSG00000043541 Dnai7 ENSMUST00000204105 ENSMUSP00000144783 TRANSLATION protein_coding - - 1 644.0 0.0 0.0 0.0 198.3 0.0 -4,-5 0.7615 3 2.0 PRINCIPAL:2 ENSMUSG00000043541 Dnai7 ENSMUST00000205162 - NO_TRANSLATION retained_intron ENSMUSG00000043541 Dnai7 ENSMUST00000152138 - NO_TRANSLATION retained_intron ENSMUSG00000043541 Dnai7 ENSMUST00000111727 - NO_TRANSLATION retained_intron ENSMUSG00000043541 Dnai7 ENSMUST00000133671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030079 Ruvbl1 ENSMUST00000129035 ENSMUSP00000117925 TRANSLATION protein_coding stop - 3 134.0 7.0 3.25 0.0 197.1 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000030079 Ruvbl1 ENSMUST00000032165 ENSMUSP00000032165 TRANSLATION protein_coding - CCDS20336.1 1 456.0 13.0 10.83 32.5 651.1 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000030206 Gsg1 ENSMUST00000087729 ENSMUSP00000085022 TRANSLATION protein_coding - CCDS39682.1 1 368.0 0.0 1.14 3.2 174.4 5.0 -4,-7 0.861 - 10.198 MINOR ENSMUSG00000030206 Gsg1 ENSMUST00000111910 ENSMUSP00000107541 TRANSLATION protein_coding - CCDS39683.1 5 365.0 0.0 1.14 2.5 174.4 5.0 -4,-7 0.6569 - 9.88 MINOR ENSMUSG00000030206 Gsg1 ENSMUST00000111911 ENSMUSP00000107542 TRANSLATION protein_coding - CCDS39683.1 1 365.0 0.0 1.14 2.5 174.4 5.0 -4,-7 0.6569 - 9.88 MINOR ENSMUSG00000030206 Gsg1 ENSMUST00000111909 ENSMUSP00000107540 TRANSLATION protein_coding - - 5 324.0 0.0 2.14 2.0 174.4 5.0 -4,-7 1.0 - 12.455 PRINCIPAL:1 ENSMUSG00000043496 Tril ENSMUST00000127748 ENSMUSP00000116056 TRANSLATION protein_coding - CCDS51776.1 - 809.0 0.0 0.16 6.1 234.6 0.0 2,-4 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000060882 Kcnd2 ENSMUST00000081542 ENSMUSP00000080257 TRANSLATION protein_coding - CCDS19934.1 1 630.0 0.0 1.9 30.2 430.3 0.0 0,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000029763 Exoc4 ENSMUST00000143190 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029763 Exoc4 ENSMUST00000115080 ENSMUSP00000110732 TRANSLATION protein_coding - - 1 506.0 0.0 0.565 1.9 0.0 0.0 -4,-5 0.2473 12 6.144 MINOR ENSMUSG00000029763 Exoc4 ENSMUST00000139132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029763 Exoc4 ENSMUST00000090381 ENSMUSP00000087859 TRANSLATION protein_coding - CCDS85028.1 1 522.0 0.0 0.565 0.0 0.0 0.0 -4,-5 0.2017 12 6.0 MINOR ENSMUSG00000029763 Exoc4 ENSMUST00000152835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029763 Exoc4 ENSMUST00000137043 - NO_TRANSLATION retained_intron ENSMUSG00000029763 Exoc4 ENSMUST00000134653 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029763 Exoc4 ENSMUST00000052266 ENSMUSP00000051965 TRANSLATION protein_coding - CCDS19987.1 1 975.0 0.0 0.565 26.1 0.0 0.0 -4,-5 1.0 24 10.0 PRINCIPAL:1 ENSMUSG00000029763 Exoc4 ENSMUST00000132842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029763 Exoc4 ENSMUST00000156207 - NO_TRANSLATION retained_intron ENSMUSG00000091382 Vmn1r18 ENSMUST00000228574 ENSMUSP00000154497 TRANSLATION protein_coding - CCDS20181.1 - 299.0 0.0 0.0 0.4 196.7 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091382 Vmn1r18 ENSMUST00000164732 ENSMUSP00000129827 TRANSLATION protein_coding - CCDS20181.1 - 299.0 0.0 0.0 0.4 196.7 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095831 Or2f1 ENSMUST00000213997 ENSMUSP00000150467 TRANSLATION protein_coding - CCDS20077.1 5 317.0 0.0 1.0 12.5 181.9 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095831 Or2f1 ENSMUST00000053647 ENSMUSP00000052043 TRANSLATION protein_coding - CCDS20077.1 - 317.0 0.0 1.0 12.5 181.9 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062833 Sval3 ENSMUST00000080742 ENSMUSP00000079566 TRANSLATION protein_coding - CCDS20059.1 1 144.0 0.0 2.8 0.1 146.3 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094315 Igkv4-78 ENSMUST00000103343 ENSMUSP00000100144 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.0 0.0 57.7 0.0 0,-3 0.7904 - -2.0 PRINCIPAL:1 ENSMUSG00000039629 Strip2 ENSMUST00000151738 ENSMUSP00000119506 TRANSLATION protein_coding - CCDS85025.1 1 816.0 0.0 10.24 0.0 222.2 0.0 -4,-5 0.1262 6 4.5 MINOR ENSMUSG00000039629 Strip2 ENSMUST00000115224 ENSMUSP00000110879 TRANSLATION protein_coding - - 1 662.0 0.0 9.38 0.0 120.4 0.0 -4,-5 0.0013 5 2.778 MINOR ENSMUSG00000039629 Strip2 ENSMUST00000046028 ENSMUSP00000036477 TRANSLATION protein_coding - CCDS19967.1 1 844.0 0.0 10.99 0.8 338.5 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000039629 Strip2 ENSMUST00000137068 - NO_TRANSLATION retained_intron ENSMUSG00000039629 Strip2 ENSMUST00000130969 - NO_TRANSLATION retained_intron ENSMUSG00000076581 Igkv8-26 ENSMUST00000103382 ENSMUSP00000100183 TRANSLATION IG_V_gene stop - - 123.0 0.0 1.0 0.0 63.0 0.0 2,-2 0.8264 - -2.0 PRINCIPAL:1 ENSMUSG00000076478 Trbv23 ENSMUST00000193997 ENSMUSP00000141642 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.25 0.0 55.8 0.0 2,-2 0.8234 - -2.0 PRINCIPAL:1 ENSMUSG00000076500 Gm20730 ENSMUST00000103301 ENSMUSP00000100102 TRANSLATION IG_LV_gene stop - 5 119.0 0.0 1.0 0.0 63.1 0.0 2,-3 0.8281 1 -2.0 PRINCIPAL:1 ENSMUSG00000071424 Grid2 ENSMUST00000159561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071424 Grid2 ENSMUST00000161105 - NO_TRANSLATION retained_intron ENSMUSG00000071424 Grid2 ENSMUST00000210324 ENSMUSP00000147707 TRANSLATION protein_coding start - 5 123.0 0.0 0.8 0.0 0.0 2.0 -4,-6 0.0002 1 -2.0 MINOR ENSMUSG00000071424 Grid2 ENSMUST00000162968 - NO_TRANSLATION retained_intron ENSMUSG00000071424 Grid2 ENSMUST00000159319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071424 Grid2 ENSMUST00000095852 ENSMUSP00000093536 TRANSLATION protein_coding - CCDS20202.1 1 1007.0 13.0 13.31 27.9 429.4 4.0 1,-2 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000071424 Grid2 ENSMUST00000160408 - NO_TRANSLATION retained_intron ENSMUSG00000030002 Dusp11 ENSMUST00000134793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030002 Dusp11 ENSMUST00000201530 ENSMUSP00000144380 TRANSLATION nonsense_mediated_decay start - 5 145.0 0.0 3.5 0.0 33.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030002 Dusp11 ENSMUST00000139164 - NO_TRANSLATION retained_intron ENSMUSG00000030002 Dusp11 ENSMUST00000151394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030002 Dusp11 ENSMUST00000032071 ENSMUSP00000032071 TRANSLATION protein_coding - CCDS20306.1 1 321.0 0.0 5.23 0.0 59.3 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030002 Dusp11 ENSMUST00000202379 - NO_TRANSLATION retained_intron ENSMUSG00000030002 Dusp11 ENSMUST00000156821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030002 Dusp11 ENSMUST00000137527 - NO_TRANSLATION retained_intron ENSMUSG00000033933 Vhl ENSMUST00000035673 ENSMUSP00000039418 TRANSLATION protein_coding - CCDS20429.1 1 181.0 0.0 3.75 0.1 243.6 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000033933 Vhl ENSMUST00000204915 ENSMUSP00000145326 TRANSLATION nonsense_mediated_decay start - 2 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033933 Vhl ENSMUST00000131819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033933 Vhl ENSMUST00000128770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003153 Slc2a3 ENSMUST00000165884 ENSMUSP00000129925 TRANSLATION protein_coding stop - 3 163.0 0.0 4.25 0.0 161.6 6.0 -4,-6 0.0022 1 -2.0 MINOR ENSMUSG00000003153 Slc2a3 ENSMUST00000032476 ENSMUSP00000032476 TRANSLATION protein_coding - CCDS20502.1 1 493.0 0.0 10.58 7.9 543.6 14.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000003153 Slc2a3 ENSMUST00000169979 - NO_TRANSLATION retained_intron ENSMUSG00000003153 Slc2a3 ENSMUST00000170724 ENSMUSP00000128076 TRANSLATION protein_coding stop - 3 89.0 0.0 2.25 0.0 62.7 3.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000003153 Slc2a3 ENSMUST00000166135 ENSMUSP00000132586 TRANSLATION nonsense_mediated_decay - - 5 63.0 0.0 0.9375 0.0 0.0 2.0 -3,-5 0.0002 - -2.0 MINOR ENSMUSG00000003153 Slc2a3 ENSMUST00000171541 ENSMUSP00000131615 TRANSLATION nonsense_mediated_decay - - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000003153 Slc2a3 ENSMUST00000168801 ENSMUSP00000129604 TRANSLATION protein_coding stop - 3 70.0 0.0 1.75 0.0 34.0 2.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003153 Slc2a3 ENSMUST00000168704 - NO_TRANSLATION retained_intron ENSMUSG00000063884 Ptcd3 ENSMUST00000206762 - NO_TRANSLATION retained_intron ENSMUSG00000063884 Ptcd3 ENSMUST00000205691 - NO_TRANSLATION retained_intron ENSMUSG00000063884 Ptcd3 ENSMUST00000205556 ENSMUSP00000145813 TRANSLATION nonsense_mediated_decay start - 5 51.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063884 Ptcd3 ENSMUST00000206284 ENSMUSP00000145566 TRANSLATION nonsense_mediated_decay start - 3 59.0 0.0 0.0 0.0 0.0 0.0 -1,2 0.0007 - -2.0 MINOR ENSMUSG00000063884 Ptcd3 ENSMUST00000082094 ENSMUSP00000080743 TRANSLATION protein_coding - CCDS20235.1 1 685.0 0.0 10.5645 0.0 49.8 0.0 -2,2 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000063884 Ptcd3 ENSMUST00000206879 ENSMUSP00000146260 TRANSLATION nonsense_mediated_decay - - 1 284.0 0.0 4.012 0.0 0.0 0.0 -2,2 0.0007 2 -2.0 MINOR ENSMUSG00000063884 Ptcd3 ENSMUST00000206631 - NO_TRANSLATION retained_intron ENSMUSG00000063884 Ptcd3 ENSMUST00000205761 - NO_TRANSLATION retained_intron ENSMUSG00000063884 Ptcd3 ENSMUST00000205269 - NO_TRANSLATION retained_intron ENSMUSG00000063884 Ptcd3 ENSMUST00000205293 - NO_TRANSLATION retained_intron ENSMUSG00000063884 Ptcd3 ENSMUST00000205420 - NO_TRANSLATION retained_intron ENSMUSG00000015733 Capza2 ENSMUST00000015877 ENSMUSP00000015877 TRANSLATION protein_coding - CCDS19926.1 1 286.0 0.0 7.5 36.9 358.1 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000015733 Capza2 ENSMUST00000156701 - NO_TRANSLATION retained_intron ENSMUSG00000015733 Capza2 ENSMUST00000148694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015733 Capza2 ENSMUST00000152005 ENSMUSP00000145159 TRANSLATION protein_coding stop - 5 169.0 0.0 4.316 0.0 145.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000015733 Capza2 ENSMUST00000142592 - NO_TRANSLATION retained_intron ENSMUSG00000015733 Capza2 ENSMUST00000136771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015733 Capza2 ENSMUST00000130606 ENSMUSP00000123398 TRANSLATION nonsense_mediated_decay - - 5 174.0 0.0 4.25 0.0 172.3 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000038538 Ubn2 ENSMUST00000159215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038538 Ubn2 ENSMUST00000162593 ENSMUSP00000124352 TRANSLATION protein_coding start - 1 1043.0 0.0 0.0 0.0 337.4 0.0 -4,-5 0.2318 6 -2.0 MINOR ENSMUSG00000038538 Ubn2 ENSMUST00000159925 - NO_TRANSLATION retained_intron ENSMUSG00000038538 Ubn2 ENSMUST00000162026 - NO_TRANSLATION retained_intron ENSMUSG00000038538 Ubn2 ENSMUST00000160583 ENSMUSP00000124043 TRANSLATION protein_coding - CCDS39461.1 1 1314.0 0.0 0.0 0.1 337.4 0.0 -4,-2 1.0 7 2.0 PRINCIPAL:2 ENSMUSG00000038538 Ubn2 ENSMUST00000162423 - NO_TRANSLATION retained_intron ENSMUSG00000038538 Ubn2 ENSMUST00000159447 ENSMUSP00000123836 TRANSLATION protein_coding start - 1 322.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.003 3 -2.0 MINOR ENSMUSG00000038538 Ubn2 ENSMUST00000161280 - NO_TRANSLATION retained_intron ENSMUSG00000038538 Ubn2 ENSMUST00000039127 ENSMUSP00000036188 TRANSLATION protein_coding - - 1 1316.0 0.0 0.0 0.1 330.7 0.0 -4,-2 0.5543 7 2.0 ALTERNATIVE:2 ENSMUSG00000054435 Gimap4 ENSMUST00000118802 ENSMUSP00000112530 TRANSLATION protein_coding - CCDS57421.1 3 200.0 15.0 1.85 0.0 52.9 0.0 -4,-5 0.0036 6 2.652 MINOR ENSMUSG00000054435 Gimap4 ENSMUST00000156770 ENSMUSP00000122070 TRANSLATION nonsense_mediated_decay - - 1 69.0 15.0 1.25 0.0 52.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000054435 Gimap4 ENSMUST00000121957 ENSMUSP00000113016 TRANSLATION protein_coding - CCDS39481.2 2 89.0 15.0 1.75 0.0 32.2 0.0 -4,-5 0.0078 2 2.448 MINOR ENSMUSG00000054435 Gimap4 ENSMUST00000119575 ENSMUSP00000113989 TRANSLATION protein_coding - CCDS57422.1 3 58.0 10.0 0.75 0.0 0.0 0.0 -4,-5 0.0233 1 0.45 MINOR ENSMUSG00000054435 Gimap4 ENSMUST00000090070 ENSMUSP00000087524 TRANSLATION protein_coding - CCDS20110.1 2 328.0 25.0 3.525 1.3 259.4 0.0 -4,-5 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000054435 Gimap4 ENSMUST00000067506 ENSMUSP00000068398 TRANSLATION protein_coding - CCDS57423.1 1 219.0 25.0 3.425 0.0 237.5 0.0 -4,-5 0.0876 9 16.488 MINOR ENSMUSG00000030245 Golt1b ENSMUST00000146508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030245 Golt1b ENSMUST00000032372 ENSMUSP00000032372 TRANSLATION protein_coding - CCDS20682.1 1 138.0 0.0 3.514 33.4 64.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000029810 Tmem176b ENSMUST00000203618 - NO_TRANSLATION retained_intron ENSMUSG00000029810 Tmem176b ENSMUST00000204783 ENSMUSP00000144810 TRANSLATION protein_coding stop - 5 69.0 0.0 0.0 0.0 41.7 2.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029810 Tmem176b ENSMUST00000164733 ENSMUSP00000128705 TRANSLATION protein_coding - CCDS20116.1 1 263.0 0.0 0.0 1.5 147.4 7.0 -4,-7 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000029810 Tmem176b ENSMUST00000204073 ENSMUSP00000144864 TRANSLATION protein_coding - CCDS20116.1 2 263.0 0.0 0.0 1.5 147.4 7.0 -4,-7 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000029810 Tmem176b ENSMUST00000203355 ENSMUSP00000145395 TRANSLATION protein_coding - CCDS20116.1 5 263.0 0.0 0.0 1.5 147.4 7.0 -4,-7 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000029810 Tmem176b ENSMUST00000203501 ENSMUSP00000144742 TRANSLATION protein_coding stop - 3 172.0 0.0 0.0 0.0 106.2 5.0 -4,-7 0.0056 2 -2.0 MINOR ENSMUSG00000029810 Tmem176b ENSMUST00000166247 ENSMUSP00000131064 TRANSLATION protein_coding - CCDS20116.1 1 263.0 0.0 0.0 1.5 147.4 7.0 -4,-7 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000029810 Tmem176b ENSMUST00000203265 ENSMUSP00000144869 TRANSLATION protein_coding stop - 3 194.0 0.0 0.0 0.0 122.6 5.0 -4,-7 0.0073 2 -2.0 MINOR ENSMUSG00000029810 Tmem176b ENSMUST00000203229 ENSMUSP00000144865 TRANSLATION protein_coding stop - 2 195.0 0.0 0.0 0.0 122.6 5.0 -4,-7 0.0073 2 -2.0 MINOR ENSMUSG00000029810 Tmem176b ENSMUST00000205159 ENSMUSP00000144949 TRANSLATION protein_coding stop - 5 196.0 0.0 0.0 0.0 123.6 5.0 -4,-7 0.0094 2 -2.0 MINOR ENSMUSG00000029810 Tmem176b ENSMUST00000101429 ENSMUSP00000098972 TRANSLATION protein_coding - CCDS20116.1 5 263.0 0.0 0.0 1.5 147.4 7.0 -4,-7 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000029810 Tmem176b ENSMUST00000205147 ENSMUSP00000145235 TRANSLATION protein_coding stop - 3 195.0 0.0 0.0 0.0 122.6 5.0 -4,-7 0.0073 2 -2.0 MINOR ENSMUSG00000042638 Gucy2c ENSMUST00000078095 ENSMUSP00000077236 TRANSLATION protein_coding - CCDS20653.1 1 1048.0 1.0 7.695 0.0 355.2 1.0 1,-3 0.2425 14 10.932 MINOR ENSMUSG00000042638 Gucy2c ENSMUST00000032338 ENSMUSP00000032338 TRANSLATION protein_coding - CCDS51941.1 1 1072.0 1.0 8.07 4.1 360.5 1.0 1,-3 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000048668 Rhno1 ENSMUST00000057421 ENSMUSP00000054573 TRANSLATION protein_coding - CCDS85164.1 1 235.0 0.0 0.2 5.8 309.1 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048668 Rhno1 ENSMUST00000155573 ENSMUSP00000114836 TRANSLATION protein_coding stop - 2 129.0 0.0 0.0 0.0 141.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000048668 Rhno1 ENSMUST00000223237 ENSMUSP00000152251 TRANSLATION protein_coding - CCDS85164.1 2 235.0 0.0 0.2 5.8 309.1 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048668 Rhno1 ENSMUST00000112151 ENSMUSP00000107778 TRANSLATION protein_coding - CCDS85164.1 1 235.0 0.0 0.2 5.8 309.1 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048668 Rhno1 ENSMUST00000132604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048668 Rhno1 ENSMUST00000112152 ENSMUSP00000107779 TRANSLATION protein_coding - CCDS85164.1 1 235.0 0.0 0.2 5.8 309.1 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048668 Rhno1 ENSMUST00000203719 ENSMUSP00000145447 TRANSLATION protein_coding stop - 3 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068536 Aoc1l1 ENSMUST00000184852 - NO_TRANSLATION retained_intron ENSMUSG00000068536 Aoc1l1 ENSMUST00000184917 ENSMUSP00000139012 TRANSLATION protein_coding - CCDS20120.1 3 723.0 15.0 3.8 0.1 431.1 0.0 3,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000068536 Aoc1l1 ENSMUST00000090063 ENSMUSP00000087517 TRANSLATION nonsense_mediated_decay - - 1 615.0 9.0 2.0 0.0 341.4 0.0 3,-1 0.001 - -2.0 MINOR ENSMUSG00000048776 Pthlh ENSMUST00000052296 ENSMUSP00000051433 TRANSLATION protein_coding - CCDS39717.1 1 175.0 0.0 0.4 11.8 116.0 0.0 2,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048776 Pthlh ENSMUST00000204197 ENSMUSP00000145509 TRANSLATION protein_coding - CCDS39717.1 5 175.0 0.0 0.4 11.8 116.0 0.0 2,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030074 Gxylt2 ENSMUST00000032157 ENSMUSP00000032157 TRANSLATION protein_coding - CCDS20390.1 1 444.0 3.0 5.8 1.1 48.5 0.0 4,-1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000030074 Gxylt2 ENSMUST00000141333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023367 Tmem176a ENSMUST00000203461 - NO_TRANSLATION retained_intron ENSMUSG00000023367 Tmem176a ENSMUST00000168406 ENSMUSP00000131775 TRANSLATION protein_coding - CCDS39482.1 3 244.0 0.0 0.0 0.1 114.8 7.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000023367 Tmem176a ENSMUST00000204482 ENSMUSP00000145101 TRANSLATION nonsense_mediated_decay - CCDS39482.1 2 244.0 0.0 0.0 0.1 114.8 7.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000023367 Tmem176a ENSMUST00000204400 ENSMUSP00000145268 TRANSLATION protein_coding stop - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023367 Tmem176a ENSMUST00000203639 ENSMUSP00000145250 TRANSLATION protein_coding stop - 3 230.0 0.0 0.0 0.0 114.8 7.0 -4,-6 0.09 2 -2.0 MINOR ENSMUSG00000023367 Tmem176a ENSMUST00000101426 ENSMUSP00000098969 TRANSLATION protein_coding - CCDS39482.1 1 244.0 0.0 0.0 0.1 114.8 7.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000023367 Tmem176a ENSMUST00000204309 ENSMUSP00000144729 TRANSLATION protein_coding start - 5 44.0 0.0 0.0 0.0 29.1 1.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000115253 Vmn1r20 ENSMUST00000226808 ENSMUSP00000153909 TRANSLATION protein_coding - CCDS51795.1 - 303.0 0.0 0.0 0.4 169.5 4.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115253 Vmn1r20 ENSMUST00000227909 ENSMUSP00000153815 TRANSLATION protein_coding - CCDS51795.1 - 303.0 0.0 0.0 0.4 169.5 4.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048216 Gpr85 ENSMUST00000127072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048216 Gpr85 ENSMUST00000115491 ENSMUSP00000111154 TRANSLATION protein_coding - CCDS19916.1 - 370.0 0.0 0.2 30.9 109.2 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048216 Gpr85 ENSMUST00000060442 ENSMUSP00000053837 TRANSLATION protein_coding - CCDS19916.1 1 370.0 0.0 0.2 30.9 109.2 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048216 Gpr85 ENSMUST00000115492 ENSMUSP00000111155 TRANSLATION protein_coding - CCDS19916.1 1 370.0 0.0 0.2 30.9 109.2 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000076604 Igkj1 ENSMUST00000103405 ENSMUSP00000142962 TRANSLATION IG_J_gene start/stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000032718 Mansc1 ENSMUST00000047443 ENSMUSP00000038346 TRANSLATION protein_coding - CCDS20637.1 1 414.0 0.0 0.45 0.0 69.9 0.0 3,-4 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000094335 Igkv1-117 ENSMUST00000103317 ENSMUSP00000100118 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.0 0.0 60.9 0.0 3,-2 0.8306 - -2.0 PRINCIPAL:1 ENSMUSG00000029759 Pon3 ENSMUST00000129344 ENSMUSP00000118137 TRANSLATION nonsense_mediated_decay - - 1 74.0 2.0 2.0 0.0 0.0 0.0 2,-2 0.0015 - -2.0 MINOR ENSMUSG00000029759 Pon3 ENSMUST00000125686 ENSMUSP00000135603 TRANSLATION protein_coding stop - 3 135.0 2.0 3.0 0.0 61.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029759 Pon3 ENSMUST00000176039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029759 Pon3 ENSMUST00000031773 ENSMUSP00000031773 TRANSLATION protein_coding - CCDS19899.1 1 354.0 5.0 8.83 26.4 137.2 0.0 2,-2 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000029759 Pon3 ENSMUST00000156848 - NO_TRANSLATION retained_intron ENSMUSG00000029759 Pon3 ENSMUST00000176948 - NO_TRANSLATION retained_intron ENSMUSG00000025609 Mkln1 ENSMUST00000150949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025609 Mkln1 ENSMUST00000202577 - NO_TRANSLATION retained_intron ENSMUSG00000025609 Mkln1 ENSMUST00000154954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025609 Mkln1 ENSMUST00000133182 - NO_TRANSLATION retained_intron ENSMUSG00000025609 Mkln1 ENSMUST00000026699 ENSMUSP00000026699 TRANSLATION protein_coding - CCDS19982.1 1 735.0 0.0 6.7885 11.9 400.6 0.0 -4,-6 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000025609 Mkln1 ENSMUST00000200915 - NO_TRANSLATION retained_intron ENSMUSG00000025609 Mkln1 ENSMUST00000147614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025609 Mkln1 ENSMUST00000149859 - NO_TRANSLATION retained_intron ENSMUSG00000025609 Mkln1 ENSMUST00000134544 - NO_TRANSLATION retained_intron ENSMUSG00000025609 Mkln1 ENSMUST00000141045 - NO_TRANSLATION retained_intron ENSMUSG00000025609 Mkln1 ENSMUST00000130108 ENSMUSP00000123048 TRANSLATION protein_coding start - 5 167.0 0.0 0.12 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025609 Mkln1 ENSMUST00000137621 - NO_TRANSLATION retained_intron ENSMUSG00000025609 Mkln1 ENSMUST00000134315 - NO_TRANSLATION retained_intron ENSMUSG00000030264 Thumpd3 ENSMUST00000152795 - NO_TRANSLATION retained_intron ENSMUSG00000030264 Thumpd3 ENSMUST00000204866 ENSMUSP00000144805 TRANSLATION protein_coding stop - 3 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030264 Thumpd3 ENSMUST00000138278 ENSMUSP00000145411 TRANSLATION protein_coding stop - 3 77.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030264 Thumpd3 ENSMUST00000153310 - NO_TRANSLATION retained_intron ENSMUSG00000030264 Thumpd3 ENSMUST00000145054 - NO_TRANSLATION retained_intron ENSMUSG00000030264 Thumpd3 ENSMUST00000134657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030264 Thumpd3 ENSMUST00000155378 ENSMUSP00000120509 TRANSLATION protein_coding stop - 2 221.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 5 -2.0 MINOR ENSMUSG00000030264 Thumpd3 ENSMUST00000137396 - NO_TRANSLATION retained_intron ENSMUSG00000030264 Thumpd3 ENSMUST00000204786 - NO_TRANSLATION retained_intron ENSMUSG00000030264 Thumpd3 ENSMUST00000032398 ENSMUSP00000032398 TRANSLATION protein_coding - CCDS20410.1 1 505.0 18.0 3.05 6.9 234.2 0.0 -4,-5 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000029766 1700012A03Rik ENSMUST00000201926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029766 1700012A03Rik ENSMUST00000031778 ENSMUSP00000031778 TRANSLATION protein_coding - CCDS19984.1 1 130.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.8458 - 0.0 PRINCIPAL:1 ENSMUSG00000029766 1700012A03Rik ENSMUST00000156267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029766 1700012A03Rik ENSMUST00000135066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038167 Plekhg6 ENSMUST00000042647 ENSMUSP00000037004 TRANSLATION protein_coding - CCDS39642.1 1 787.0 0.0 3.64 1.5 122.8 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000039985 Sinhcaf ENSMUST00000054080 ENSMUSP00000050952 TRANSLATION protein_coding - CCDS20713.1 1 221.0 0.0 2.58 21.3 277.3 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000039985 Sinhcaf ENSMUST00000203164 ENSMUSP00000145370 TRANSLATION protein_coding - - 5 142.0 0.0 2.58 0.0 206.8 0.0 -4,-7 0.016 1 7.77 MINOR ENSMUSG00000039985 Sinhcaf ENSMUST00000127063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039985 Sinhcaf ENSMUST00000204119 ENSMUSP00000145423 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 1.0 0.0 85.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039985 Sinhcaf ENSMUST00000204435 ENSMUSP00000145487 TRANSLATION protein_coding - CCDS20713.1 5 221.0 0.0 2.58 21.3 277.3 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000039985 Sinhcaf ENSMUST00000146457 ENSMUSP00000117859 TRANSLATION protein_coding stop - 2 53.0 0.0 1.33 0.0 104.7 0.0 -4,-7 0.0003 1 -2.0 MINOR ENSMUSG00000039985 Sinhcaf ENSMUST00000132696 ENSMUSP00000115417 TRANSLATION protein_coding stop - 2 156.0 0.0 2.58 0.0 218.1 0.0 -4,-7 0.0158 1 -2.0 MINOR ENSMUSG00000039985 Sinhcaf ENSMUST00000081956 ENSMUSP00000107188 TRANSLATION protein_coding - CCDS20713.1 1 221.0 0.0 2.58 21.3 277.3 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000039985 Sinhcaf ENSMUST00000143963 - NO_TRANSLATION retained_intron ENSMUSG00000039985 Sinhcaf ENSMUST00000204590 ENSMUSP00000145496 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 1.0 0.0 85.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039985 Sinhcaf ENSMUST00000111562 ENSMUSP00000107187 TRANSLATION protein_coding - CCDS20713.1 3 221.0 0.0 2.58 21.3 277.3 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000039985 Sinhcaf ENSMUST00000139355 ENSMUSP00000119540 TRANSLATION protein_coding stop - 3 94.0 0.0 2.58 0.0 197.9 0.0 -4,-7 0.0189 1 -2.0 MINOR ENSMUSG00000067825 Pex26 ENSMUST00000118234 ENSMUSP00000113981 TRANSLATION protein_coding - CCDS80604.1 1 166.0 0.0 2.0 0.0 187.0 0.0 -4,-6 0.0035 2 1.998 MINOR ENSMUSG00000067825 Pex26 ENSMUST00000139393 - NO_TRANSLATION retained_intron ENSMUSG00000067825 Pex26 ENSMUST00000088561 ENSMUSP00000085921 TRANSLATION protein_coding - CCDS20488.1 1 305.0 0.0 4.0 3.4 456.8 1.0 -4,-6 1.0 3 9.0 PRINCIPAL:4 ENSMUSG00000067825 Pex26 ENSMUST00000120066 ENSMUSP00000113233 TRANSLATION protein_coding - CCDS80603.1 1 304.0 0.0 4.0 3.4 449.1 1.0 -4,-6 0.8717 3 9.0 ALTERNATIVE:2 ENSMUSG00000067825 Pex26 ENSMUST00000137432 ENSMUSP00000119048 TRANSLATION protein_coding stop - 3 180.0 0.0 3.0 0.0 293.5 0.0 -4,-6 0.0008 2 -2.0 MINOR ENSMUSG00000067825 Pex26 ENSMUST00000125633 ENSMUSP00000117444 TRANSLATION nonsense_mediated_decay - CCDS20488.1 1 305.0 0.0 4.0 3.4 456.8 1.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000096490 Igkv10-94 ENSMUST00000103330 ENSMUSP00000100131 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.1 0.0 63.5 0.0 4,-1 0.8294 1 -2.0 PRINCIPAL:1 ENSMUSG00000030196 Tas2r103 ENSMUST00000032317 ENSMUSP00000032317 TRANSLATION protein_coding - CCDS51933.1 - 312.0 0.0 0.0 0.1 260.9 0.0 0,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000057381 Tas2r123 ENSMUST00000071696 ENSMUSP00000071615 TRANSLATION protein_coding - CCDS20624.1 - 333.0 0.0 0.0 0.1 259.2 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095497 Igkv1-122 ENSMUST00000103314 ENSMUSP00000100115 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.0 0.0 60.2 0.0 3,-2 0.8306 - -2.0 PRINCIPAL:1 ENSMUSG00000030315 Vgll4 ENSMUST00000032459 ENSMUSP00000032459 TRANSLATION protein_coding - CCDS20436.1 1 287.0 0.0 1.8 6.3 313.3 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000030315 Vgll4 ENSMUST00000204693 - NO_TRANSLATION retained_intron ENSMUSG00000030315 Vgll4 ENSMUST00000152710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030315 Vgll4 ENSMUST00000139640 ENSMUSP00000118618 TRANSLATION protein_coding stop - 2 188.0 0.0 0.0 0.0 217.4 0.0 -4,-5 0.0014 2 -2.0 MINOR ENSMUSG00000030315 Vgll4 ENSMUST00000147639 ENSMUSP00000123139 TRANSLATION protein_coding stop - 1 230.0 0.0 1.0 0.0 278.6 0.0 -4,-5 0.0031 3 -2.0 MINOR ENSMUSG00000030315 Vgll4 ENSMUST00000123478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030315 Vgll4 ENSMUST00000155620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030125 Lrrc23 ENSMUST00000132492 - NO_TRANSLATION retained_intron ENSMUSG00000030125 Lrrc23 ENSMUST00000147669 ENSMUSP00000122883 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030125 Lrrc23 ENSMUST00000032218 ENSMUSP00000032218 TRANSLATION protein_coding - CCDS20528.1 5 340.0 0.0 5.83 0.3 44.8 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000030125 Lrrc23 ENSMUST00000128697 ENSMUSP00000122362 TRANSLATION protein_coding stop - 3 103.0 0.0 1.83 0.0 10.9 0.0 -4,-5 0.0016 - -2.0 MINOR ENSMUSG00000030125 Lrrc23 ENSMUST00000112475 ENSMUSP00000108094 TRANSLATION protein_coding - CCDS20528.1 1 340.0 0.0 5.83 0.3 44.8 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000039841 Zfp800 ENSMUST00000115321 ENSMUSP00000110976 TRANSLATION protein_coding - CCDS39445.1 1 662.0 26.0 0.2 12.5 204.4 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000039841 Zfp800 ENSMUST00000115320 ENSMUSP00000110975 TRANSLATION protein_coding - CCDS39445.1 1 662.0 26.0 0.2 12.5 204.4 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000039841 Zfp800 ENSMUST00000035930 ENSMUSP00000039222 TRANSLATION protein_coding - CCDS39445.1 1 662.0 26.0 0.2 12.5 204.4 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000039841 Zfp800 ENSMUST00000155494 ENSMUSP00000120392 TRANSLATION protein_coding stop - 2 160.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039841 Zfp800 ENSMUST00000123098 ENSMUSP00000114604 TRANSLATION protein_coding stop - 5 469.0 14.0 0.0 0.0 130.9 0.0 -4,-5 0.0016 4 -2.0 MINOR ENSMUSG00000029672 Fam3c ENSMUST00000168965 ENSMUSP00000128135 TRANSLATION protein_coding stop - 5 110.0 0.0 1.5924 0.0 0.0 0.0 2,-2 0.0034 3 -2.0 MINOR ENSMUSG00000029672 Fam3c ENSMUST00000163371 ENSMUSP00000128855 TRANSLATION nonsense_mediated_decay - - 5 99.0 0.0 1.0924 0.0 0.0 0.0 2,-2 0.0015 2 -2.0 MINOR ENSMUSG00000029672 Fam3c ENSMUST00000165576 ENSMUSP00000127709 TRANSLATION protein_coding - CCDS39436.1 1 227.0 0.0 4.8424 22.9 100.8 0.0 2,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000029672 Fam3c ENSMUST00000163963 ENSMUSP00000127559 TRANSLATION protein_coding - - 1 247.0 0.0 4.8424 0.0 100.8 0.0 -4,-7 0.0161 7 12.0 MINOR ENSMUSG00000029672 Fam3c ENSMUST00000081288 ENSMUSP00000080040 TRANSLATION protein_coding - - 1 197.0 0.0 4.8424 0.0 100.8 0.0 -4,-7 0.0129 7 12.0 MINOR ENSMUSG00000029672 Fam3c ENSMUST00000164669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059934 Prh1 ENSMUST00000111972 ENSMUSP00000107603 TRANSLATION protein_coding - CCDS57460.1 5 289.0 0.0 0.0 0.0 27.1 0.0 3,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000059934 Prh1 ENSMUST00000177523 ENSMUSP00000135877 TRANSLATION protein_coding - CCDS57460.1 5 289.0 0.0 0.0 0.0 27.1 0.0 3,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030304 Ergic2 ENSMUST00000032446 ENSMUSP00000032446 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000030304 Ergic2 ENSMUST00000203268 ENSMUSP00000145204 TRANSLATION protein_coding start - 2 198.0 0.0 2.725 0.0 128.3 0.0 -4,-2 0.0115 2 -2.0 MINOR ENSMUSG00000030304 Ergic2 ENSMUST00000150980 - NO_TRANSLATION retained_intron ENSMUSG00000030304 Ergic2 ENSMUST00000204832 ENSMUSP00000144886 TRANSLATION nonsense_mediated_decay start - 2 49.0 0.0 0.6 0.0 27.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030304 Ergic2 ENSMUST00000125469 - NO_TRANSLATION retained_intron ENSMUSG00000030304 Ergic2 ENSMUST00000148437 - NO_TRANSLATION retained_intron ENSMUSG00000030304 Ergic2 ENSMUST00000132413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030304 Ergic2 ENSMUST00000126698 ENSMUSP00000116551 TRANSLATION protein_coding stop - 3 103.0 0.0 0.0 0.0 76.4 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000030304 Ergic2 ENSMUST00000149631 - NO_TRANSLATION retained_intron ENSMUSG00000030304 Ergic2 ENSMUST00000126773 - NO_TRANSLATION retained_intron ENSMUSG00000030304 Ergic2 ENSMUST00000203993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030304 Ergic2 ENSMUST00000140311 - NO_TRANSLATION retained_intron ENSMUSG00000030304 Ergic2 ENSMUST00000134574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030304 Ergic2 ENSMUST00000143282 ENSMUSP00000145143 TRANSLATION protein_coding start - 5 133.0 0.0 1.61 0.0 53.1 0.0 -4,-6 0.0001 2 -2.0 MINOR ENSMUSG00000030304 Ergic2 ENSMUST00000145162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030304 Ergic2 ENSMUST00000136008 ENSMUSP00000120456 TRANSLATION protein_coding - CCDS20708.1 1 377.0 0.0 2.857 30.2 247.1 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000030304 Ergic2 ENSMUST00000130242 ENSMUSP00000122028 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000072718 Klra10 ENSMUST00000112020 ENSMUSP00000107651 TRANSLATION protein_coding - CCDS20600.1 1 266.0 3.0 4.8 0.1 227.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030353 Tead4 ENSMUST00000130454 ENSMUSP00000118083 TRANSLATION protein_coding - CCDS39645.1 5 384.0 0.0 8.0 0.0 0.0 0.0 -4,-5 0.1193 2 4.8 MINOR ENSMUSG00000030353 Tead4 ENSMUST00000006311 ENSMUSP00000006311 TRANSLATION protein_coding - CCDS39646.1 1 427.0 0.0 8.6 0.0 0.0 0.0 -4,-5 0.9666 2 6.0 PRINCIPAL:1 ENSMUSG00000030353 Tead4 ENSMUST00000133118 ENSMUSP00000120941 TRANSLATION protein_coding stop - 2 54.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0151 - -2.0 MINOR ENSMUSG00000030353 Tead4 ENSMUST00000143004 ENSMUSP00000118606 TRANSLATION protein_coding stop - 3 38.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0213 - -2.0 MINOR ENSMUSG00000030353 Tead4 ENSMUST00000112157 ENSMUSP00000107784 TRANSLATION protein_coding - CCDS39645.1 1 384.0 0.0 8.0 0.0 0.0 0.0 -4,-5 0.1193 2 4.8 MINOR ENSMUSG00000036938 Try5 ENSMUST00000064324 ENSMUSP00000064498 TRANSLATION protein_coding - CCDS20045.1 1 246.0 21.0 5.0 33.9 271.6 0.0 4,-1 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000036938 Try5 ENSMUST00000173916 ENSMUSP00000133640 TRANSLATION protein_coding stop - 5 135.0 11.0 3.0 3.9 159.9 0.0 -2,-5 0.0243 - -2.0 MINOR ENSMUSG00000030243 Recql ENSMUST00000128082 ENSMUSP00000120951 TRANSLATION protein_coding stop - 2 85.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030243 Recql ENSMUST00000111803 ENSMUSP00000107434 TRANSLATION protein_coding - CCDS39695.1 1 648.0 17.0 11.58 11.1 198.7 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000030243 Recql ENSMUST00000138578 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030243 Recql ENSMUST00000203772 ENSMUSP00000145179 TRANSLATION protein_coding stop - 5 167.0 12.0 2.5 0.0 40.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030243 Recql ENSMUST00000143102 - NO_TRANSLATION retained_intron ENSMUSG00000030243 Recql ENSMUST00000129694 ENSMUSP00000122328 TRANSLATION protein_coding stop - 5 167.0 12.0 2.5 0.0 40.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030243 Recql ENSMUST00000154870 - NO_TRANSLATION retained_intron ENSMUSG00000030243 Recql ENSMUST00000141504 ENSMUSP00000119452 TRANSLATION protein_coding start - 1 235.0 4.0 4.33 0.0 73.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030243 Recql ENSMUST00000155149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030243 Recql ENSMUST00000100832 ENSMUSP00000098394 TRANSLATION protein_coding - CCDS57466.1 1 634.0 17.0 11.58 0.0 198.7 0.0 -4,-5 0.1431 10 18.0 MINOR ENSMUSG00000030243 Recql ENSMUST00000123912 ENSMUSP00000122409 TRANSLATION protein_coding start - 3 61.0 0.0 0.33 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030243 Recql ENSMUST00000032370 ENSMUSP00000032370 TRANSLATION protein_coding - CCDS57465.1 1 631.0 17.0 11.58 0.0 198.7 0.0 -4,-5 0.1268 10 18.0 MINOR ENSMUSG00000059382 Tas2r120 ENSMUST00000071707 ENSMUSP00000071626 TRANSLATION protein_coding - CCDS20617.1 - 295.0 0.0 0.2 0.4 253.6 0.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045009 Prrt3 ENSMUST00000205075 ENSMUSP00000145089 TRANSLATION protein_coding - - 2 417.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.1456 2 0.0 ALTERNATIVE:2 ENSMUSG00000045009 Prrt3 ENSMUST00000204268 ENSMUSP00000145443 TRANSLATION protein_coding - CCDS85122.1 1 972.0 0.0 0.0 0.0 0.0 5.0 2,-2 0.9975 10 0.0 ALTERNATIVE:2 ENSMUSG00000045009 Prrt3 ENSMUST00000204134 ENSMUSP00000145031 TRANSLATION protein_coding - CCDS85122.1 1 972.0 0.0 0.0 0.0 0.0 5.0 2,-2 0.9975 10 0.0 ALTERNATIVE:2 ENSMUSG00000045009 Prrt3 ENSMUST00000205170 ENSMUSP00000145183 TRANSLATION protein_coding - - 2 417.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.1456 2 0.0 ALTERNATIVE:2 ENSMUSG00000045009 Prrt3 ENSMUST00000101059 ENSMUSP00000098620 TRANSLATION protein_coding - CCDS20424.1 1 971.0 0.0 0.0 0.0 0.0 5.0 2,-2 1.0 10 0.0 PRINCIPAL:4 ENSMUSG00000030330 Ing4 ENSMUST00000156091 - NO_TRANSLATION retained_intron ENSMUSG00000030330 Ing4 ENSMUST00000032480 ENSMUSP00000032480 TRANSLATION protein_coding - CCDS39632.1 1 248.0 8.0 5.76 30.8 113.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:4 ENSMUSG00000030330 Ing4 ENSMUST00000152574 - NO_TRANSLATION retained_intron ENSMUSG00000030330 Ing4 ENSMUST00000146229 - NO_TRANSLATION retained_intron ENSMUSG00000030330 Ing4 ENSMUST00000140131 ENSMUSP00000121519 TRANSLATION protein_coding - - 1 249.0 8.0 5.76 30.8 113.8 0.0 -4,-5 0.8705 1 18.0 ALTERNATIVE:1 ENSMUSG00000030330 Ing4 ENSMUST00000133695 - NO_TRANSLATION retained_intron ENSMUSG00000030330 Ing4 ENSMUST00000128277 - NO_TRANSLATION retained_intron ENSMUSG00000030330 Ing4 ENSMUST00000151125 - NO_TRANSLATION retained_intron ENSMUSG00000030330 Ing4 ENSMUST00000112417 ENSMUSP00000108036 TRANSLATION nonsense_mediated_decay - - 1 168.0 0.0 2.85 1.1 113.8 0.0 -4,-5 0.0699 1 -2.0 MINOR ENSMUSG00000096630 Vmn2r26 ENSMUST00000032238 ENSMUSP00000032238 TRANSLATION protein_coding - CCDS20515.1 1 855.0 5.0 2.67 0.1 379.7 0.0 0,-3 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000096630 Vmn2r26 ENSMUST00000233955 ENSMUSP00000156611 TRANSLATION nonsense_mediated_decay - - - 500.0 5.0 0.8 0.0 108.3 0.0 0,-3 0.0007 - -2.0 MINOR ENSMUSG00000096630 Vmn2r26 ENSMUST00000232707 ENSMUSP00000156965 TRANSLATION nonsense_mediated_decay - - - 529.0 5.0 1.47 0.0 108.5 0.0 0,-3 0.0007 - -2.0 MINOR ENSMUSG00000040234 Tm7sf3 ENSMUST00000138476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040234 Tm7sf3 ENSMUST00000147027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040234 Tm7sf3 ENSMUST00000037709 ENSMUSP00000045650 TRANSLATION protein_coding - CCDS20699.1 1 565.0 0.0 10.83 1.4 129.8 0.0 2,-2 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000040234 Tm7sf3 ENSMUST00000127529 ENSMUSP00000118517 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 1.0 0.0 0.0 0.0 2,-2 0.0026 1 -2.0 MINOR ENSMUSG00000076475 Trbv19 ENSMUST00000103276 ENSMUSP00000100092 TRANSLATION TR_V_gene stop - - 117.0 0.0 1.0 0.0 49.2 0.0 3,-2 0.8247 - -2.0 PRINCIPAL:1 ENSMUSG00000038836 Agbl3 ENSMUST00000202017 - NO_TRANSLATION retained_intron ENSMUSG00000038836 Agbl3 ENSMUST00000115014 ENSMUSP00000110666 TRANSLATION protein_coding - CCDS80516.1 1 129.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.033 - 0.0 MINOR ENSMUSG00000038836 Agbl3 ENSMUST00000135304 ENSMUSP00000118303 TRANSLATION nonsense_mediated_decay - - 1 185.0 0.0 1.5 1.0 0.0 0.0 -4,-5 0.0076 - -2.0 MINOR ENSMUSG00000038836 Agbl3 ENSMUST00000115009 ENSMUSP00000110661 TRANSLATION protein_coding - - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000038836 Agbl3 ENSMUST00000148834 ENSMUSP00000116066 TRANSLATION nonsense_mediated_decay - - 1 185.0 0.0 1.5 1.0 0.0 0.0 -4,-5 0.0076 - -2.0 MINOR ENSMUSG00000038836 Agbl3 ENSMUST00000155726 - NO_TRANSLATION retained_intron ENSMUSG00000038836 Agbl3 ENSMUST00000143474 - NO_TRANSLATION retained_intron ENSMUSG00000038836 Agbl3 ENSMUST00000115017 ENSMUSP00000110669 TRANSLATION protein_coding - CCDS19995.2 1 1001.0 3.0 5.2 0.0 63.3 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000038836 Agbl3 ENSMUST00000155890 - NO_TRANSLATION retained_intron ENSMUSG00000038836 Agbl3 ENSMUST00000115016 ENSMUSP00000110668 TRANSLATION protein_coding - CCDS80515.1 1 1006.0 3.0 5.2 0.0 63.3 0.0 -4,-5 0.6407 - 9.0 ALTERNATIVE:2 ENSMUSG00000038836 Agbl3 ENSMUST00000115012 ENSMUSP00000110664 TRANSLATION protein_coding - - 3 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000029923 Rab19 ENSMUST00000031986 ENSMUSP00000031986 TRANSLATION protein_coding - CCDS20021.1 1 217.0 21.0 3.0 21.9 183.0 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000041477 Dcp1b ENSMUST00000112777 ENSMUSP00000108397 TRANSLATION protein_coding - CCDS39610.1 1 578.0 0.0 3.05 0.4 204.3 0.0 -4,-7 0.3987 11 8.0 ALTERNATIVE:2 ENSMUSG00000041477 Dcp1b ENSMUST00000127059 - NO_TRANSLATION retained_intron ENSMUSG00000041477 Dcp1b ENSMUST00000073909 ENSMUSP00000073568 TRANSLATION protein_coding - - 1 545.0 0.0 3.05 0.1 204.3 0.0 -4,-7 0.7699 10 8.0 PRINCIPAL:2 ENSMUSG00000041477 Dcp1b ENSMUST00000136437 - NO_TRANSLATION retained_intron ENSMUSG00000041477 Dcp1b ENSMUST00000149651 - NO_TRANSLATION retained_intron ENSMUSG00000038115 Ano2 ENSMUST00000161619 ENSMUSP00000125426 TRANSLATION nonsense_mediated_decay start - 1 492.0 0.0 6.79 0.0 402.5 3.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000038115 Ano2 ENSMUST00000159984 ENSMUSP00000123965 TRANSLATION nonsense_mediated_decay start - 5 188.0 0.0 3.9 0.0 140.7 3.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038115 Ano2 ENSMUST00000160317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038115 Ano2 ENSMUST00000160496 ENSMUSP00000125303 TRANSLATION protein_coding - CCDS39643.2 1 1002.0 0.0 15.21 3.8 793.8 4.0 -4,-1 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000038115 Ano2 ENSMUST00000161293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038115 Ano2 ENSMUST00000159111 - NO_TRANSLATION retained_intron ENSMUSG00000095007 Igkv12-41 ENSMUST00000103369 ENSMUSP00000100170 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 62.3 0.0 4,-1 0.8251 1 -2.0 PRINCIPAL:1 ENSMUSG00000030342 Cd9 ENSMUST00000140024 - NO_TRANSLATION retained_intron ENSMUSG00000030342 Cd9 ENSMUST00000032492 ENSMUSP00000032492 TRANSLATION protein_coding - CCDS20551.1 1 226.0 0.0 6.65 34.0 160.8 0.0 -2,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000030342 Cd9 ENSMUST00000130132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034312 Iqsec1 ENSMUST00000238855 - NO_TRANSLATION retained_intron ENSMUSG00000034312 Iqsec1 ENSMUST00000238821 ENSMUSP00000159115 TRANSLATION protein_coding stop - - 788.0 0.0 4.67 0.0 273.0 0.0 -3,-6 0.0077 14 -2.0 MINOR ENSMUSG00000034312 Iqsec1 ENSMUST00000205068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034312 Iqsec1 ENSMUST00000146977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034312 Iqsec1 ENSMUST00000156834 ENSMUSP00000118802 TRANSLATION protein_coding stop - 1 218.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0008 2 -2.0 MINOR ENSMUSG00000034312 Iqsec1 ENSMUST00000204983 - NO_TRANSLATION retained_intron ENSMUSG00000034312 Iqsec1 ENSMUST00000154198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034312 Iqsec1 ENSMUST00000141434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034312 Iqsec1 ENSMUST00000133492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034312 Iqsec1 ENSMUST00000212100 ENSMUSP00000148669 TRANSLATION protein_coding - - 5 1051.0 0.0 7.15 0.4 424.2 0.0 -4,-5 0.2897 25 8.0 ALTERNATIVE:2 ENSMUSG00000034312 Iqsec1 ENSMUST00000101151 ENSMUSP00000098710 TRANSLATION protein_coding - CCDS51851.1 5 1099.0 0.0 6.67 1.1 424.2 0.0 -4,-6 0.3541 24 7.078 MINOR ENSMUSG00000034312 Iqsec1 ENSMUST00000101153 ENSMUSP00000098712 TRANSLATION protein_coding - CCDS51850.1 5 961.0 0.0 6.67 6.2 424.2 0.0 -4,-5 1.0 22 9.04 PRINCIPAL:2 ENSMUSG00000045291 Ube2q2l ENSMUST00000058713 ENSMUSP00000060726 TRANSLATION protein_coding - CCDS51940.1 - 371.0 0.0 1.0 10.1 60.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045291 Ube2q2l ENSMUST00000203392 ENSMUSP00000144858 TRANSLATION protein_coding stop - 2 112.0 0.0 0.0 0.0 24.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000045291 Ube2q2l ENSMUST00000204830 ENSMUSP00000145343 TRANSLATION protein_coding - CCDS51940.1 1 371.0 0.0 1.0 10.1 60.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029885 Moxd2 ENSMUST00000031937 ENSMUSP00000031937 TRANSLATION protein_coding - CCDS20039.1 1 619.0 5.0 12.3 4.9 324.8 0.0 3,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000041681 Iapp ENSMUST00000041993 ENSMUSP00000043956 TRANSLATION protein_coding - CCDS39694.1 1 93.0 0.0 1.75 6.9 56.8 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000041681 Iapp ENSMUST00000141583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030254 Rad18 ENSMUST00000113180 ENSMUSP00000108805 TRANSLATION protein_coding - - 5 428.0 13.0 3.75 1.1 80.3 0.0 -4,-5 0.3463 4 14.1 ALTERNATIVE:2 ENSMUSG00000030254 Rad18 ENSMUST00000135092 - NO_TRANSLATION retained_intron ENSMUSG00000030254 Rad18 ENSMUST00000068487 ENSMUSP00000070619 TRANSLATION protein_coding - CCDS51870.1 1 556.0 13.0 3.75 0.0 80.3 0.0 -4,-5 0.1383 4 14.0 ALTERNATIVE:2 ENSMUSG00000030254 Rad18 ENSMUST00000077088 ENSMUSP00000076341 TRANSLATION protein_coding - CCDS39589.1 1 509.0 13.0 3.75 0.0 80.3 0.0 -4,-5 0.1276 4 14.0 ALTERNATIVE:2 ENSMUSG00000030254 Rad18 ENSMUST00000113182 ENSMUSP00000108807 TRANSLATION protein_coding - - 5 449.0 13.0 3.75 2.0 80.3 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:2 ENSMUSG00000030254 Rad18 ENSMUST00000142079 ENSMUSP00000117582 TRANSLATION protein_coding start/stop - 5 241.0 1.0 0.0 0.0 0.0 0.0 -4,-5 0.001 1 -2.0 MINOR ENSMUSG00000030254 Rad18 ENSMUST00000156063 ENSMUSP00000138558 TRANSLATION nonsense_mediated_decay - - 5 309.0 13.0 3.75 0.0 80.3 0.0 -4,-5 0.0316 3 -2.0 MINOR ENSMUSG00000030254 Rad18 ENSMUST00000132590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051046 Or6d14 ENSMUST00000217313 ENSMUSP00000150737 TRANSLATION protein_coding - CCDS20457.1 5 320.0 0.0 1.0 3.7 159.2 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051046 Or6d14 ENSMUST00000215846 ENSMUSP00000149188 TRANSLATION protein_coding - CCDS20457.1 5 320.0 0.0 1.0 3.7 159.2 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051046 Or6d14 ENSMUST00000203867 ENSMUSP00000145465 TRANSLATION protein_coding - CCDS20457.1 3 320.0 0.0 1.0 3.7 159.2 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051046 Or6d14 ENSMUST00000214699 ENSMUSP00000150787 TRANSLATION protein_coding - CCDS20457.1 5 320.0 0.0 1.0 3.7 159.2 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051046 Or6d14 ENSMUST00000060204 ENSMUSP00000052730 TRANSLATION protein_coding - CCDS20457.1 - 320.0 0.0 1.0 3.7 159.2 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000068574 Or2r11 ENSMUST00000216650 ENSMUSP00000149459 TRANSLATION protein_coding - CCDS20071.1 5 313.0 0.0 1.0 8.5 174.7 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068574 Or2r11 ENSMUST00000090156 ENSMUSP00000087617 TRANSLATION protein_coding - CCDS20071.1 - 313.0 0.0 1.0 8.5 174.7 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000076589 Igkv8-18 ENSMUST00000103390 ENSMUSP00000100191 TRANSLATION IG_V_gene stop - - 123.0 0.0 1.0 0.0 65.9 0.0 4,-1 0.8251 - -2.0 PRINCIPAL:1 ENSMUSG00000029868 Trpv6 ENSMUST00000194405 - NO_TRANSLATION retained_intron ENSMUSG00000029868 Trpv6 ENSMUST00000031902 ENSMUSP00000031902 TRANSLATION protein_coding - CCDS20052.2 1 767.0 0.0 13.15 1.0 148.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000107874 Prb1b ENSMUST00000048686 ENSMUSP00000047347 TRANSLATION protein_coding - CCDS39672.1 1 296.0 0.0 0.0 0.0 151.1 0.0 3,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044162 Tnip3 ENSMUST00000203613 - NO_TRANSLATION retained_intron ENSMUSG00000044162 Tnip3 ENSMUST00000204438 - NO_TRANSLATION retained_intron ENSMUSG00000044162 Tnip3 ENSMUST00000212402 ENSMUSP00000148446 TRANSLATION protein_coding - - 5 268.0 0.0 4.1 0.0 0.0 0.0 -4,-5 0.0564 - 6.0 ALTERNATIVE:2 ENSMUSG00000044162 Tnip3 ENSMUST00000205009 - NO_TRANSLATION retained_intron ENSMUSG00000044162 Tnip3 ENSMUST00000204241 - NO_TRANSLATION retained_intron ENSMUSG00000044162 Tnip3 ENSMUST00000114236 ENSMUSP00000109874 TRANSLATION protein_coding - CCDS39501.1 1 208.0 0.0 4.1 0.1 0.0 0.0 -3,-4 0.9939 - 6.0 PRINCIPAL:2 ENSMUSG00000044162 Tnip3 ENSMUST00000131482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044162 Tnip3 ENSMUST00000212375 ENSMUSP00000148845 TRANSLATION protein_coding - - 5 279.0 0.0 4.1 0.0 0.0 0.0 -4,-5 0.0561 - 6.0 ALTERNATIVE:2 ENSMUSG00000044248 Vmn1r45 ENSMUST00000228492 ENSMUSP00000154781 TRANSLATION protein_coding - - - 198.0 0.0 0.0 0.0 342.4 5.0 -4,-2 0.0093 - 0.0 MINOR ENSMUSG00000044248 Vmn1r45 ENSMUST00000227426 ENSMUSP00000153735 TRANSLATION protein_coding - CCDS39559.1 - 318.0 0.0 0.0 0.0 445.5 7.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044248 Vmn1r45 ENSMUST00000227571 ENSMUSP00000153977 TRANSLATION protein_coding - - - 198.0 0.0 0.0 0.0 342.4 5.0 -4,-2 0.0093 - 0.0 MINOR ENSMUSG00000044248 Vmn1r45 ENSMUST00000227977 ENSMUSP00000154708 TRANSLATION protein_coding - CCDS39559.1 - 318.0 0.0 0.0 0.0 445.5 7.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044248 Vmn1r45 ENSMUST00000226167 ENSMUSP00000154647 TRANSLATION protein_coding - - - 198.0 0.0 0.0 0.0 342.4 5.0 -4,-2 0.0093 - 0.0 MINOR ENSMUSG00000044248 Vmn1r45 ENSMUST00000227122 ENSMUSP00000154196 TRANSLATION protein_coding - - - 198.0 0.0 0.0 0.0 342.4 5.0 -4,-2 0.0093 - 0.0 MINOR ENSMUSG00000044248 Vmn1r45 ENSMUST00000054202 ENSMUSP00000052123 TRANSLATION protein_coding - CCDS39559.1 1 318.0 0.0 0.0 0.0 445.5 7.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044248 Vmn1r45 ENSMUST00000228662 ENSMUSP00000154795 TRANSLATION protein_coding - CCDS39559.1 - 318.0 0.0 0.0 0.0 445.5 7.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030218 Mgp ENSMUST00000203103 - NO_TRANSLATION retained_intron ENSMUSG00000030218 Mgp ENSMUST00000032342 ENSMUSP00000032342 TRANSLATION protein_coding - CCDS20659.1 1 104.0 0.0 0.0 18.0 0.0 0.0 3,-2 1.0 2 4.0 PRINCIPAL:1 ENSMUSG00000053119 Chmp3 ENSMUST00000127774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053119 Chmp3 ENSMUST00000128382 - NO_TRANSLATION retained_intron ENSMUSG00000053119 Chmp3 ENSMUST00000142169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053119 Chmp3 ENSMUST00000065364 ENSMUSP00000068410 TRANSLATION protein_coding - CCDS20232.1 1 224.0 0.0 5.68 32.8 135.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000053119 Chmp3 ENSMUST00000059462 ENSMUSP00000109815 TRANSLATION protein_coding - CCDS20232.1 1 224.0 0.0 5.68 32.8 135.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000053119 Chmp3 ENSMUST00000132917 ENSMUSP00000144985 TRANSLATION nonsense_mediated_decay - - 3 41.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053119 Chmp3 ENSMUST00000204199 ENSMUSP00000144867 TRANSLATION protein_coding stop - 2 96.0 0.0 3.33 0.0 54.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053119 Chmp3 ENSMUST00000204535 ENSMUSP00000145223 TRANSLATION protein_coding stop - 3 59.0 0.0 1.75 0.0 43.3 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000068341 Reg3d ENSMUST00000089667 ENSMUSP00000087096 TRANSLATION protein_coding - CCDS20254.1 1 175.0 0.0 3.99 7.3 62.9 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000068341 Reg3d ENSMUST00000167492 ENSMUSP00000132220 TRANSLATION protein_coding - CCDS51815.1 5 129.0 0.0 2.99 1.7 32.8 0.0 4,-1 0.0733 1 7.35 MINOR ENSMUSG00000068341 Reg3d ENSMUST00000205240 ENSMUSP00000144715 TRANSLATION protein_coding - CCDS51815.1 2 129.0 0.0 2.99 1.7 32.8 0.0 4,-1 0.0733 1 7.35 MINOR ENSMUSG00000042042 Csgalnact2 ENSMUST00000125531 - NO_TRANSLATION retained_intron ENSMUSG00000042042 Csgalnact2 ENSMUST00000049344 ENSMUSP00000039819 TRANSLATION protein_coding - CCDS20469.1 1 542.0 3.0 1.7285 27.0 274.3 0.0 0,-4 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000042042 Csgalnact2 ENSMUST00000136265 ENSMUSP00000116371 TRANSLATION protein_coding stop - 2 223.0 3.0 0.9535 0.0 196.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000056370 Sftpb ENSMUST00000182765 - NO_TRANSLATION retained_intron ENSMUSG00000056370 Sftpb ENSMUST00000183018 ENSMUSP00000138695 TRANSLATION protein_coding - CCDS71775.1 5 354.0 0.0 5.1 4.3 151.3 0.0 3,-2 0.7796 8 12.648 MINOR ENSMUSG00000056370 Sftpb ENSMUST00000239526 - NO_TRANSLATION retained_intron ENSMUSG00000056370 Sftpb ENSMUST00000182014 ENSMUSP00000138204 TRANSLATION protein_coding - - 5 377.0 0.0 5.6 5.0 151.3 0.0 3,-2 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000030230 Plcz1 ENSMUST00000149931 ENSMUSP00000117043 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030230 Plcz1 ENSMUST00000129986 ENSMUSP00000119121 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030230 Plcz1 ENSMUST00000032356 ENSMUSP00000032356 TRANSLATION protein_coding - CCDS20671.1 1 647.0 9.0 6.94 0.1 462.9 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000030230 Plcz1 ENSMUST00000137148 ENSMUSP00000121908 TRANSLATION nonsense_mediated_decay - - 1 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003476 Crhr2 ENSMUST00000114374 ENSMUSP00000110015 TRANSLATION protein_coding - - 5 410.0 0.0 10.1 9.8 326.6 10.0 1,-2 0.8566 - 11.0 ALTERNATIVE:1 ENSMUSG00000003476 Crhr2 ENSMUST00000204117 - NO_TRANSLATION retained_intron ENSMUSG00000003476 Crhr2 ENSMUST00000095898 ENSMUSP00000093586 TRANSLATION nonsense_mediated_decay - - 2 143.0 0.0 2.75 0.0 68.7 0.0 1,-2 0.0 - -2.0 MINOR ENSMUSG00000003476 Crhr2 ENSMUST00000169777 - NO_TRANSLATION retained_intron ENSMUSG00000003476 Crhr2 ENSMUST00000166954 - NO_TRANSLATION retained_intron ENSMUSG00000003476 Crhr2 ENSMUST00000212633 ENSMUSP00000148408 TRANSLATION protein_coding - CCDS85053.1 1 431.0 0.0 10.1 1.3 326.6 10.0 2,-2 0.4776 - 8.102 MINOR ENSMUSG00000003476 Crhr2 ENSMUST00000003568 ENSMUSP00000003568 TRANSLATION protein_coding - CCDS20162.1 1 430.0 0.0 10.1 1.3 326.6 10.0 2,-2 0.4827 - 8.102 MINOR ENSMUSG00000003476 Crhr2 ENSMUST00000164012 ENSMUSP00000126673 TRANSLATION protein_coding - - 1 420.0 0.0 9.5 0.0 326.6 10.0 2,-2 0.1523 - 6.8 MINOR ENSMUSG00000003476 Crhr2 ENSMUST00000213026 ENSMUSP00000148297 TRANSLATION protein_coding - CCDS85052.1 1 411.0 0.0 10.1 9.8 326.6 10.0 1,-2 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000015053 Gata2 ENSMUST00000203579 - NO_TRANSLATION retained_intron ENSMUSG00000015053 Gata2 ENSMUST00000203480 ENSMUSP00000145503 TRANSLATION protein_coding stop - 5 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015053 Gata2 ENSMUST00000170089 ENSMUSP00000128198 TRANSLATION protein_coding - CCDS20333.1 1 480.0 8.0 2.4 10.6 106.7 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000015053 Gata2 ENSMUST00000205151 - NO_TRANSLATION retained_intron ENSMUSG00000015053 Gata2 ENSMUST00000015197 ENSMUSP00000015197 TRANSLATION protein_coding - CCDS20333.1 1 480.0 8.0 2.4 10.6 106.7 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000089694 Nat8f7 ENSMUST00000160534 ENSMUSP00000123947 TRANSLATION protein_coding - CCDS57434.1 5 227.0 22.0 1.0 4.5 49.5 2.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000089694 Nat8f7 ENSMUST00000179613 ENSMUSP00000136338 TRANSLATION protein_coding - CCDS57434.1 - 227.0 22.0 1.0 4.5 49.5 2.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000000248 Clec2g ENSMUST00000203405 ENSMUSP00000144788 TRANSLATION protein_coding - CCDS85167.1 1 212.0 0.0 3.32 0.0 52.3 2.0 -4,-5 0.162 - 10.218 MINOR ENSMUSG00000000248 Clec2g ENSMUST00000000254 ENSMUSP00000000254 TRANSLATION protein_coding - CCDS20578.1 1 269.0 0.0 3.32 0.0 74.4 2.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000000248 Clec2g ENSMUST00000075789 ENSMUSP00000075192 TRANSLATION protein_coding - CCDS51921.1 1 207.0 0.0 3.32 0.0 52.3 2.0 -4,-5 0.1605 - 10.218 MINOR ENSMUSG00000000248 Clec2g ENSMUST00000142388 ENSMUSP00000115140 TRANSLATION protein_coding - CCDS51921.1 1 207.0 0.0 3.32 0.0 52.3 2.0 -4,-5 0.1605 - 10.218 MINOR ENSMUSG00000000248 Clec2g ENSMUST00000204259 ENSMUSP00000144879 TRANSLATION protein_coding - CCDS85168.1 1 218.0 0.0 3.32 0.0 52.3 2.0 -4,-7 0.1747 - 10.218 MINOR ENSMUSG00000000248 Clec2g ENSMUST00000146925 - NO_TRANSLATION retained_intron ENSMUSG00000076498 Trbc2 ENSMUST00000103299 ENSMUSP00000100100 TRANSLATION TR_C_gene start - - 173.0 4.0 2.66 0.0 83.8 0.0 -4,-5 0.7392 - -2.0 PRINCIPAL:1 ENSMUSG00000076481 Trbv30 ENSMUST00000191646 ENSMUSP00000141290 TRANSLATION TR_V_gene stop - - 111.0 0.0 1.0 0.0 37.4 0.0 2,-3 0.8254 - -2.0 PRINCIPAL:1 ENSMUSG00000043505 Gimap5 ENSMUST00000055558 ENSMUSP00000056820 TRANSLATION protein_coding - CCDS20114.1 1 308.0 18.0 1.0 1.5 263.0 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000043505 Gimap5 ENSMUST00000135174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043505 Gimap5 ENSMUST00000203006 - NO_TRANSLATION retained_intron ENSMUSG00000043505 Gimap5 ENSMUST00000147047 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040163 1700034J05Rik ENSMUST00000111622 ENSMUSP00000107249 TRANSLATION protein_coding - CCDS51956.1 1 300.0 0.0 0.0 0.1 414.9 0.0 -4,-5 0.8948 1 2.0 PRINCIPAL:2 ENSMUSG00000040163 1700034J05Rik ENSMUST00000036592 ENSMUSP00000043802 TRANSLATION protein_coding - CCDS51957.1 1 301.0 0.0 0.0 0.1 416.4 0.0 -4,-5 0.6234 1 2.0 ALTERNATIVE:2 ENSMUSG00000040242 Fgfr1op2 ENSMUST00000205231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040242 Fgfr1op2 ENSMUST00000111663 ENSMUSP00000107292 TRANSLATION protein_coding - CCDS39711.1 1 253.0 0.0 2.4 11.1 237.0 0.0 -4,-5 0.4337 8 12.156 MINOR ENSMUSG00000040242 Fgfr1op2 ENSMUST00000067404 ENSMUSP00000098352 TRANSLATION protein_coding - CCDS85186.1 1 215.0 0.0 2.4 32.5 255.8 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000040242 Fgfr1op2 ENSMUST00000147862 - NO_TRANSLATION retained_intron ENSMUSG00000040242 Fgfr1op2 ENSMUST00000160697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040242 Fgfr1op2 ENSMUST00000058245 ENSMUSP00000107289 TRANSLATION protein_coding - - 2 172.0 0.0 2.4 3.4 186.4 0.0 -4,-5 0.0705 5 8.14 MINOR ENSMUSG00000040242 Fgfr1op2 ENSMUST00000037836 ENSMUSP00000037316 TRANSLATION protein_coding - - 3 172.0 0.0 2.4 3.4 186.4 0.0 -4,-5 0.0705 5 8.14 MINOR ENSMUSG00000029851 Tcaf2 ENSMUST00000031879 ENSMUSP00000031879 TRANSLATION protein_coding - CCDS20075.1 1 919.0 3.0 6.6 6.8 264.3 0.0 -4,-6 1.0 15 17.0 PRINCIPAL:1 ENSMUSG00000029851 Tcaf2 ENSMUST00000131341 - NO_TRANSLATION retained_intron ENSMUSG00000030035 Wbp1 ENSMUST00000205023 ENSMUSP00000145178 TRANSLATION protein_coding - - - 28.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000030035 Wbp1 ENSMUST00000151393 ENSMUSP00000145130 TRANSLATION protein_coding - - 3 195.0 0.0 0.0 0.0 34.6 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000030035 Wbp1 ENSMUST00000123394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030035 Wbp1 ENSMUST00000032111 ENSMUSP00000032111 TRANSLATION protein_coding - CCDS39529.1 1 304.0 0.0 1.5 4.2 145.3 2.0 -4,-2 0.4937 - 12.96 MINOR ENSMUSG00000030035 Wbp1 ENSMUST00000142493 - NO_TRANSLATION retained_intron ENSMUSG00000030035 Wbp1 ENSMUST00000131936 ENSMUSP00000144735 TRANSLATION protein_coding start/stop - 3 133.0 0.0 1.5 0.0 99.6 0.0 -3,-7 0.0169 - -2.0 MINOR ENSMUSG00000030035 Wbp1 ENSMUST00000131939 - NO_TRANSLATION retained_intron ENSMUSG00000030035 Wbp1 ENSMUST00000113936 ENSMUSP00000109569 TRANSLATION protein_coding - CCDS39528.1 1 269.0 0.0 1.5 11.0 145.3 2.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030035 Wbp1 ENSMUST00000146328 ENSMUSP00000122900 TRANSLATION protein_coding stop - 1 288.0 0.0 1.5 0.0 145.3 2.0 -4,-2 0.0797 - -2.0 MINOR ENSMUSG00000030103 Bhlhe40 ENSMUST00000163617 ENSMUSP00000132157 TRANSLATION protein_coding - - 2 132.0 0.0 1.3 0.0 47.6 0.0 -4,-5 0.0276 1 9.102 MINOR ENSMUSG00000030103 Bhlhe40 ENSMUST00000204550 - NO_TRANSLATION retained_intron ENSMUSG00000030103 Bhlhe40 ENSMUST00000166346 - NO_TRANSLATION retained_intron ENSMUSG00000030103 Bhlhe40 ENSMUST00000032194 ENSMUSP00000032194 TRANSLATION protein_coding - CCDS20400.1 1 411.0 0.0 1.3 12.7 92.0 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000030357 Fkbp4 ENSMUST00000151796 ENSMUSP00000122087 TRANSLATION protein_coding stop - 3 187.0 0.0 4.33 0.0 140.6 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000030357 Fkbp4 ENSMUST00000032508 ENSMUSP00000032508 TRANSLATION protein_coding - CCDS20573.1 1 458.0 0.0 10.43 11.5 212.5 0.0 -4,-5 1.0 26 15.0 PRINCIPAL:1 ENSMUSG00000030357 Fkbp4 ENSMUST00000139448 - NO_TRANSLATION retained_intron ENSMUSG00000030357 Fkbp4 ENSMUST00000150387 ENSMUSP00000119930 TRANSLATION protein_coding stop - 5 260.0 0.0 6.33 0.0 156.1 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000052962 Mrpl35 ENSMUST00000065103 ENSMUSP00000066493 TRANSLATION protein_coding - CCDS20234.1 1 188.0 0.0 2.0 11.0 55.6 0.0 -4,0 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000052962 Mrpl35 ENSMUST00000205435 ENSMUSP00000146077 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000052962 Mrpl35 ENSMUST00000205758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073209 Klf14 ENSMUST00000101589 ENSMUSP00000099122 TRANSLATION protein_coding - CCDS51744.1 - 325.0 12.0 0.4 3.1 67.0 0.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000095682 Igkv3-1 ENSMUST00000103404 ENSMUSP00000100205 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.1 67.4 0.0 4,-1 0.8219 2 -2.0 PRINCIPAL:1 ENSMUSG00000032757 Bet1 ENSMUST00000049166 ENSMUSP00000044877 TRANSLATION protein_coding - CCDS19895.1 1 118.0 0.0 2.3 26.3 0.0 0.0 -4,-6 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000032757 Bet1 ENSMUST00000150319 - NO_TRANSLATION retained_intron ENSMUSG00000032757 Bet1 ENSMUST00000203612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032757 Bet1 ENSMUST00000204806 - NO_TRANSLATION retained_intron ENSMUSG00000032757 Bet1 ENSMUST00000145696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032757 Bet1 ENSMUST00000205191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076536 Igkv4-86 ENSMUST00000200454 ENSMUSP00000143537 TRANSLATION IG_V_gene stop - - 114.0 0.0 1.1 0.0 55.4 0.0 2,-2 0.8234 - -2.0 PRINCIPAL:1 ENSMUSG00000054446 Cpa1 ENSMUST00000031806 ENSMUSP00000031806 TRANSLATION protein_coding - CCDS19977.1 1 419.0 9.0 8.8 28.2 393.5 0.0 4,-1 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000054446 Cpa1 ENSMUST00000139004 - NO_TRANSLATION retained_intron ENSMUSG00000029864 Gstk1 ENSMUST00000203174 - NO_TRANSLATION retained_intron ENSMUSG00000029864 Gstk1 ENSMUST00000031897 ENSMUSP00000031897 TRANSLATION protein_coding - CCDS20063.1 1 226.0 11.0 6.5 11.8 191.3 0.0 -4,-7 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000029864 Gstk1 ENSMUST00000204792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029864 Gstk1 ENSMUST00000204088 ENSMUSP00000145070 TRANSLATION nonsense_mediated_decay - - 1 143.0 5.0 4.0 0.0 125.0 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000030188 Magohb ENSMUST00000172883 ENSMUSP00000133553 TRANSLATION nonsense_mediated_decay start - 5 35.0 0.0 0.75 0.0 31.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030188 Magohb ENSMUST00000174488 - NO_TRANSLATION retained_intron ENSMUSG00000030188 Magohb ENSMUST00000174781 - NO_TRANSLATION retained_intron ENSMUSG00000030188 Magohb ENSMUST00000173837 ENSMUSP00000134663 TRANSLATION protein_coding - CCDS85172.1 5 102.0 0.0 3.0 6.2 173.3 0.0 -4,-5 0.1341 - 4.112 MINOR ENSMUSG00000030188 Magohb ENSMUST00000173198 ENSMUSP00000134494 TRANSLATION nonsense_mediated_decay start - 5 44.0 0.0 1.38 0.0 49.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030188 Magohb ENSMUST00000173332 ENSMUSP00000133708 TRANSLATION nonsense_mediated_decay start - 5 44.0 0.0 1.38 0.0 49.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030188 Magohb ENSMUST00000032307 ENSMUSP00000032307 TRANSLATION protein_coding - CCDS39670.2 1 148.0 0.0 4.58 23.9 267.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029752 Asns ENSMUST00000133972 - NO_TRANSLATION retained_intron ENSMUSG00000029752 Asns ENSMUST00000031766 ENSMUSP00000031766 TRANSLATION protein_coding - CCDS19907.1 1 561.0 23.0 11.75 19.4 187.4 0.0 -4,-7 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000029752 Asns ENSMUST00000115542 ENSMUSP00000111204 TRANSLATION protein_coding - CCDS19907.1 5 561.0 23.0 11.75 19.4 187.4 0.0 -4,-7 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000029752 Asns ENSMUST00000140097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029752 Asns ENSMUST00000139596 ENSMUSP00000120489 TRANSLATION protein_coding stop - 3 158.0 11.0 3.0 0.0 26.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000029752 Asns ENSMUST00000148349 ENSMUSP00000118003 TRANSLATION protein_coding stop - 3 127.0 11.0 2.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000029752 Asns ENSMUST00000126303 ENSMUSP00000115415 TRANSLATION protein_coding stop - 3 223.0 11.0 4.0 0.0 29.3 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000029679 Hyal6 ENSMUST00000031690 ENSMUSP00000031690 TRANSLATION protein_coding - CCDS51728.1 1 494.0 0.0 3.0 0.0 443.9 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000098470 C1rb ENSMUST00000184647 ENSMUSP00000139376 TRANSLATION protein_coding - CCDS71834.1 1 706.0 21.0 9.3 8.8 447.3 0.0 4,-1 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000059375 Vmn1r33 ENSMUST00000227418 ENSMUSP00000153840 TRANSLATION protein_coding - CCDS20212.1 - 305.0 0.0 0.0 0.4 172.9 4.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000059375 Vmn1r33 ENSMUST00000079678 ENSMUSP00000078619 TRANSLATION protein_coding - CCDS20212.1 - 305.0 0.0 0.0 0.4 172.9 4.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000076461 Trbv1 ENSMUST00000103262 ENSMUSP00000100078 TRANSLATION TR_V_gene stop - - 116.0 0.0 1.0 0.0 50.3 0.0 3,-2 0.824 - -2.0 PRINCIPAL:1 ENSMUSG00000036402 Gng12 ENSMUST00000114222 ENSMUSP00000109860 TRANSLATION protein_coding - CCDS39502.1 1 72.0 0.0 2.33 33.9 64.3 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036402 Gng12 ENSMUST00000204511 ENSMUSP00000145346 TRANSLATION protein_coding - - 5 83.0 0.0 1.83 0.0 45.3 0.0 -4,-1 0.0028 4 8.94 MINOR ENSMUSG00000036402 Gng12 ENSMUST00000114225 ENSMUSP00000109863 TRANSLATION protein_coding - CCDS39502.1 1 72.0 0.0 2.33 33.9 64.3 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036402 Gng12 ENSMUST00000114228 ENSMUSP00000109866 TRANSLATION protein_coding - CCDS39502.1 1 72.0 0.0 2.33 33.9 64.3 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036402 Gng12 ENSMUST00000114224 ENSMUSP00000109862 TRANSLATION protein_coding - CCDS39502.1 3 72.0 0.0 2.33 33.9 64.3 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036402 Gng12 ENSMUST00000114226 ENSMUSP00000109864 TRANSLATION protein_coding - CCDS39502.1 1 72.0 0.0 2.33 33.9 64.3 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036402 Gng12 ENSMUST00000204862 ENSMUSP00000145234 TRANSLATION protein_coding stop - 3 65.0 0.0 2.0 0.0 55.5 0.0 -4,-1 0.0018 3 -2.0 MINOR ENSMUSG00000036402 Gng12 ENSMUST00000114227 ENSMUSP00000109865 TRANSLATION protein_coding - CCDS39502.1 1 72.0 0.0 2.33 33.9 64.3 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036402 Gng12 ENSMUST00000043148 ENSMUSP00000046557 TRANSLATION protein_coding - CCDS39502.1 1 72.0 0.0 2.33 33.9 64.3 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000060724 Vmn1r47 ENSMUST00000227229 ENSMUSP00000154255 TRANSLATION protein_coding - CCDS20349.1 - 310.0 0.0 0.0 0.1 414.7 5.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060724 Vmn1r47 ENSMUST00000228680 ENSMUSP00000154134 TRANSLATION protein_coding - CCDS20349.1 - 310.0 0.0 0.0 0.1 414.7 5.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060724 Vmn1r47 ENSMUST00000074881 ENSMUSP00000074422 TRANSLATION protein_coding - CCDS20349.1 - 310.0 0.0 0.0 0.1 414.7 5.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060724 Vmn1r47 ENSMUST00000227811 ENSMUSP00000153727 TRANSLATION protein_coding - CCDS20349.1 - 310.0 0.0 0.0 0.1 414.7 5.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048930 Tada3 ENSMUST00000113106 - NO_TRANSLATION retained_intron ENSMUSG00000048930 Tada3 ENSMUST00000043333 ENSMUSP00000043363 TRANSLATION protein_coding - - 1 413.0 0.0 0.0 0.0 92.8 0.0 -4,-5 0.0569 2 6.0 MINOR ENSMUSG00000048930 Tada3 ENSMUST00000113107 - NO_TRANSLATION retained_intron ENSMUSG00000048930 Tada3 ENSMUST00000099118 ENSMUSP00000108736 TRANSLATION protein_coding - - 1 232.0 0.0 0.0 0.0 92.8 0.0 -4,-5 0.0291 - 6.0 MINOR ENSMUSG00000048930 Tada3 ENSMUST00000125414 - NO_TRANSLATION retained_intron ENSMUSG00000048930 Tada3 ENSMUST00000193384 ENSMUSP00000141289 TRANSLATION protein_coding stop - 2 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048930 Tada3 ENSMUST00000032410 ENSMUSP00000032410 TRANSLATION protein_coding - CCDS20416.1 1 432.0 0.0 0.0 34.7 92.8 0.0 -4,-5 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000079494 Nat8f5 ENSMUST00000032074 ENSMUSP00000032074 TRANSLATION protein_coding - CCDS20300.1 1 227.0 21.0 1.0 4.5 57.8 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000030208 Emp1 ENSMUST00000111907 ENSMUSP00000107538 TRANSLATION protein_coding - CCDS20647.1 1 160.0 0.0 3.55 20.7 183.6 3.0 2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030208 Emp1 ENSMUST00000032330 ENSMUSP00000032330 TRANSLATION protein_coding - CCDS20647.1 1 160.0 0.0 3.55 20.7 183.6 3.0 2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030208 Emp1 ENSMUST00000154270 ENSMUSP00000138789 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.75 0.0 0.0 0.0 2,-2 0.0035 - -2.0 MINOR ENSMUSG00000030208 Emp1 ENSMUST00000204894 - NO_TRANSLATION retained_intron ENSMUSG00000030208 Emp1 ENSMUST00000205156 ENSMUSP00000145069 TRANSLATION protein_coding - CCDS20647.1 5 160.0 0.0 3.55 20.7 183.6 3.0 2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030208 Emp1 ENSMUST00000204299 - NO_TRANSLATION retained_intron ENSMUSG00000064259 Vmn1r13 ENSMUST00000226892 ENSMUSP00000154534 TRANSLATION protein_coding - CCDS20176.1 - 300.0 0.0 0.0 0.4 191.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000064259 Vmn1r13 ENSMUST00000227298 ENSMUSP00000154039 TRANSLATION protein_coding - CCDS20176.1 - 300.0 0.0 0.0 0.4 191.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000064259 Vmn1r13 ENSMUST00000227421 ENSMUSP00000154429 TRANSLATION protein_coding - CCDS20176.1 - 300.0 0.0 0.0 0.4 191.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000064259 Vmn1r13 ENSMUST00000078885 ENSMUSP00000077924 TRANSLATION protein_coding - CCDS20176.1 - 300.0 0.0 0.0 0.4 191.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000076473 Trbv16 ENSMUST00000103274 ENSMUSP00000100090 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.033 0.0 58.0 0.0 3,-2 0.822 - -2.0 PRINCIPAL:1 ENSMUSG00000060477 Irak2 ENSMUST00000143948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060477 Irak2 ENSMUST00000204744 ENSMUSP00000144848 TRANSLATION nonsense_mediated_decay - - 3 70.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000060477 Irak2 ENSMUST00000155554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060477 Irak2 ENSMUST00000089023 ENSMUSP00000086417 TRANSLATION protein_coding - - 1 551.0 0.0 4.73 0.0 95.4 0.0 -4,-6 0.0017 7 3.302 MINOR ENSMUSG00000060477 Irak2 ENSMUST00000113024 - NO_TRANSLATION retained_intron ENSMUSG00000060477 Irak2 ENSMUST00000059286 ENSMUSP00000055073 TRANSLATION protein_coding - CCDS20430.1 1 622.0 0.0 6.48 1.5 133.7 0.0 -4,-6 1.0 8 9.0 PRINCIPAL:2 ENSMUSG00000060477 Irak2 ENSMUST00000089022 ENSMUSP00000086416 TRANSLATION protein_coding - CCDS51873.1 1 574.0 0.0 6.48 0.1 133.6 0.0 -4,-6 0.2635 7 8.0 ALTERNATIVE:2 ENSMUSG00000060477 Irak2 ENSMUST00000204091 - NO_TRANSLATION retained_intron ENSMUSG00000060477 Irak2 ENSMUST00000203381 - NO_TRANSLATION retained_intron ENSMUSG00000039070 Cpa4 ENSMUST00000049251 ENSMUSP00000048558 TRANSLATION protein_coding - CCDS19975.1 1 420.0 8.0 9.8 21.0 384.0 0.0 1,-2 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000055594 5530400C23Rik ENSMUST00000048459 ENSMUSP00000035635 TRANSLATION protein_coding - CCDS51935.1 1 173.0 0.0 0.0 0.0 39.6 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000000942 Hoxa4 ENSMUST00000101395 ENSMUSP00000098943 TRANSLATION protein_coding - CCDS20142.1 1 285.0 0.0 0.8 0.4 77.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030168 Adipor2 ENSMUST00000188851 - NO_TRANSLATION retained_intron ENSMUSG00000030168 Adipor2 ENSMUST00000032272 ENSMUSP00000032272 TRANSLATION protein_coding - CCDS20473.1 1 386.0 0.0 5.0 16.2 240.8 7.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000030168 Adipor2 ENSMUST00000187699 ENSMUSP00000139703 TRANSLATION nonsense_mediated_decay - - 1 110.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030168 Adipor2 ENSMUST00000189710 ENSMUSP00000139895 TRANSLATION protein_coding stop - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030168 Adipor2 ENSMUST00000169744 ENSMUSP00000126138 TRANSLATION protein_coding - CCDS20473.1 1 386.0 0.0 5.0 16.2 240.8 7.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000039130 Zc3hc1 ENSMUST00000115184 ENSMUSP00000110838 TRANSLATION protein_coding - - 5 430.0 0.0 0.0 1.0 173.3 0.0 -4,-5 0.1494 4 6.0 MINOR ENSMUSG00000039130 Zc3hc1 ENSMUST00000202393 - NO_TRANSLATION retained_intron ENSMUSG00000039130 Zc3hc1 ENSMUST00000102992 ENSMUSP00000100057 TRANSLATION protein_coding - CCDS19970.1 1 481.0 0.0 0.0 0.0 162.2 0.0 -4,-5 0.1058 9 5.334 MINOR ENSMUSG00000039130 Zc3hc1 ENSMUST00000129796 - NO_TRANSLATION retained_intron ENSMUSG00000039130 Zc3hc1 ENSMUST00000152101 - NO_TRANSLATION retained_intron ENSMUSG00000039130 Zc3hc1 ENSMUST00000126945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039130 Zc3hc1 ENSMUST00000080812 ENSMUSP00000079627 TRANSLATION protein_coding - CCDS80508.1 1 501.0 0.0 0.0 11.0 162.2 0.0 -4,-5 1.0 9 8.334 PRINCIPAL:1 ENSMUSG00000039130 Zc3hc1 ENSMUST00000138983 - NO_TRANSLATION retained_intron ENSMUSG00000039130 Zc3hc1 ENSMUST00000152391 ENSMUSP00000135447 TRANSLATION protein_coding - - 5 459.0 0.0 0.0 1.0 121.1 0.0 -4,-5 0.0135 9 2.868 MINOR ENSMUSG00000039130 Zc3hc1 ENSMUST00000147990 ENSMUSP00000116484 TRANSLATION nonsense_mediated_decay start - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039130 Zc3hc1 ENSMUST00000136255 ENSMUSP00000115433 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010796 Asz1 ENSMUST00000010940 ENSMUSP00000010940 TRANSLATION protein_coding - CCDS19929.1 1 475.0 0.0 5.664 12.7 123.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000010796 Asz1 ENSMUST00000136626 - NO_TRANSLATION retained_intron ENSMUSG00000010796 Asz1 ENSMUST00000136194 ENSMUSP00000122680 TRANSLATION nonsense_mediated_decay - - 5 148.0 0.0 3.264 0.0 51.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010796 Asz1 ENSMUST00000146216 - NO_TRANSLATION retained_intron ENSMUSG00000010796 Asz1 ENSMUST00000131614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036371 Serbp1 ENSMUST00000203054 - NO_TRANSLATION retained_intron ENSMUSG00000036371 Serbp1 ENSMUST00000203436 ENSMUSP00000144713 TRANSLATION protein_coding - CCDS85061.1 1 401.0 0.0 0.0 9.2 247.5 0.0 -4,-5 1.0 19 5.0 ALTERNATIVE:1 ENSMUSG00000036371 Serbp1 ENSMUST00000203077 ENSMUSP00000144913 TRANSLATION protein_coding - CCDS85060.1 1 392.0 0.0 0.0 9.2 224.2 0.0 -4,-5 0.8578 20 3.0 MINOR ENSMUSG00000036371 Serbp1 ENSMUST00000204810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036371 Serbp1 ENSMUST00000203402 - NO_TRANSLATION retained_intron ENSMUSG00000036371 Serbp1 ENSMUST00000204293 ENSMUSP00000145472 TRANSLATION protein_coding - CCDS85062.1 1 386.0 0.0 0.0 9.2 239.3 0.0 -4,-5 0.9291 19 3.0 MINOR ENSMUSG00000036371 Serbp1 ENSMUST00000203233 ENSMUSP00000144754 TRANSLATION nonsense_mediated_decay - - 5 155.0 0.0 0.0 0.0 126.9 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000036371 Serbp1 ENSMUST00000204135 ENSMUSP00000145142 TRANSLATION nonsense_mediated_decay start - 3 75.0 0.0 0.0 0.0 37.1 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000036371 Serbp1 ENSMUST00000204034 ENSMUSP00000144941 TRANSLATION protein_coding start/stop - 3 186.0 0.0 0.0 0.0 108.7 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000036371 Serbp1 ENSMUST00000204294 ENSMUSP00000145517 TRANSLATION protein_coding - - 5 211.0 0.0 0.0 0.0 133.4 0.0 -4,-5 0.0 10 0.0 MINOR ENSMUSG00000036371 Serbp1 ENSMUST00000204206 - NO_TRANSLATION retained_intron ENSMUSG00000036371 Serbp1 ENSMUST00000205106 ENSMUSP00000144933 TRANSLATION protein_coding - - 5 362.0 0.0 0.0 0.1 178.4 0.0 -4,-5 0.0029 17 0.0 MINOR ENSMUSG00000036371 Serbp1 ENSMUST00000204944 - NO_TRANSLATION retained_intron ENSMUSG00000036371 Serbp1 ENSMUST00000042990 ENSMUSP00000039110 TRANSLATION protein_coding - CCDS20219.1 1 407.0 0.0 0.0 9.2 232.9 0.0 -4,-5 0.9114 20 4.0 PRINCIPAL:3 ENSMUSG00000036371 Serbp1 ENSMUST00000205091 ENSMUSP00000144772 TRANSLATION nonsense_mediated_decay - - 1 147.0 0.0 0.0 0.0 126.6 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000036371 Serbp1 ENSMUST00000203167 - NO_TRANSLATION retained_intron ENSMUSG00000034648 Lrrn1 ENSMUST00000049285 ENSMUSP00000037096 TRANSLATION protein_coding - CCDS20399.1 1 716.0 0.0 1.0 26.7 197.6 0.0 0,-3 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000030189 Ybx3 ENSMUST00000204481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030189 Ybx3 ENSMUST00000203157 - NO_TRANSLATION retained_intron ENSMUSG00000030189 Ybx3 ENSMUST00000205035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030189 Ybx3 ENSMUST00000087865 ENSMUSP00000085172 TRANSLATION protein_coding - CCDS20605.1 1 292.0 0.0 3.08 1.1 90.7 0.0 -4,-5 0.2476 6 8.25 ALTERNATIVE:2 ENSMUSG00000030189 Ybx3 ENSMUST00000032309 ENSMUSP00000032309 TRANSLATION protein_coding - CCDS20606.1 1 361.0 0.0 3.08 1.4 90.7 0.0 -4,-5 1.0 7 9.0 PRINCIPAL:2 ENSMUSG00000034744 Nagk ENSMUST00000037376 ENSMUSP00000042026 TRANSLATION protein_coding - CCDS20286.1 1 343.0 30.0 8.83 18.6 0.0 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000034744 Nagk ENSMUST00000128262 - NO_TRANSLATION retained_intron ENSMUSG00000034744 Nagk ENSMUST00000113851 ENSMUSP00000109482 TRANSLATION protein_coding - CCDS85072.1 1 361.0 29.0 8.5 0.0 0.0 0.0 -4,-2 0.1216 9 10.674 MINOR ENSMUSG00000034744 Nagk ENSMUST00000141611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034744 Nagk ENSMUST00000151147 - NO_TRANSLATION retained_intron ENSMUSG00000034744 Nagk ENSMUST00000113850 ENSMUSP00000109481 TRANSLATION protein_coding - - 5 337.0 27.0 6.08 0.1 0.0 0.0 -4,-5 0.0887 5 4.5 MINOR ENSMUSG00000034744 Nagk ENSMUST00000146117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034744 Nagk ENSMUST00000150322 - NO_TRANSLATION retained_intron ENSMUSG00000034744 Nagk ENSMUST00000205681 - NO_TRANSLATION retained_intron ENSMUSG00000034744 Nagk ENSMUST00000205599 - NO_TRANSLATION retained_intron ENSMUSG00000037788 Vopp1 ENSMUST00000143953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037788 Vopp1 ENSMUST00000145608 ENSMUSP00000145084 TRANSLATION protein_coding - - 1 122.0 0.0 2.5 0.0 0.0 1.0 4,-1 0.1044 2 6.0 MINOR ENSMUSG00000037788 Vopp1 ENSMUST00000114297 ENSMUSP00000109936 TRANSLATION protein_coding - CCDS39497.1 1 172.0 0.0 2.5 13.0 0.0 1.0 4,-1 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000037788 Vopp1 ENSMUST00000204878 ENSMUSP00000144953 TRANSLATION protein_coding stop - 2 80.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0159 1 -2.0 MINOR ENSMUSG00000037788 Vopp1 ENSMUST00000127485 ENSMUSP00000115377 TRANSLATION protein_coding - - 1 114.0 0.0 2.5 0.0 0.0 1.0 4,-1 0.1046 2 6.0 MINOR ENSMUSG00000037788 Vopp1 ENSMUST00000203212 ENSMUSP00000144859 TRANSLATION protein_coding stop - 2 37.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0157 1 -2.0 MINOR ENSMUSG00000115467 Vmn1r37 ENSMUST00000227923 ENSMUSP00000154109 TRANSLATION protein_coding - CCDS20215.1 - 302.0 0.0 0.0 0.4 180.4 9.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115467 Vmn1r37 ENSMUST00000228791 ENSMUSP00000153814 TRANSLATION protein_coding - - - 265.0 0.0 0.0 0.0 175.4 8.0 0,-4 0.0707 - 0.0 MINOR ENSMUSG00000115467 Vmn1r37 ENSMUST00000226974 ENSMUSP00000154344 TRANSLATION protein_coding - CCDS20215.1 - 302.0 0.0 0.0 0.4 180.4 9.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115467 Vmn1r37 ENSMUST00000226886 ENSMUSP00000154597 TRANSLATION protein_coding - - - 135.0 0.0 0.0 0.0 88.8 5.0 -4,-5 0.0068 - 0.0 MINOR ENSMUSG00000115467 Vmn1r37 ENSMUST00000077482 ENSMUSP00000076691 TRANSLATION protein_coding - CCDS20215.1 - 302.0 0.0 0.0 0.4 180.4 9.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115467 Vmn1r37 ENSMUST00000226311 ENSMUSP00000154249 TRANSLATION protein_coding - - - 135.0 0.0 0.0 0.0 88.8 5.0 -4,-5 0.0068 - 0.0 MINOR ENSMUSG00000019577 Pdk4 ENSMUST00000203347 ENSMUSP00000145377 TRANSLATION protein_coding stop - 3 109.0 0.0 2.25 0.0 98.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019577 Pdk4 ENSMUST00000134068 - NO_TRANSLATION retained_intron ENSMUSG00000019577 Pdk4 ENSMUST00000019721 ENSMUSP00000019721 TRANSLATION protein_coding - CCDS19902.1 1 412.0 25.0 9.75 29.2 229.3 0.0 -4,0 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000042873 Lhfpl4 ENSMUST00000203665 ENSMUSP00000144899 TRANSLATION protein_coding start - 3 168.0 0.0 2.0 0.0 139.1 4.0 0,-4 0.0057 - -2.0 MINOR ENSMUSG00000042873 Lhfpl4 ENSMUST00000162280 ENSMUSP00000124470 TRANSLATION protein_coding - CCDS39591.1 1 247.0 0.0 3.5 7.3 229.5 5.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000030122 Ptms ENSMUST00000134916 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030122 Ptms ENSMUST00000249594 ENSMUSP00000159803 TRANSLATION protein_coding - - - 170.0 0.0 0.0 0.0 54.2 0.0 -4,-2 0.0248 5 6.0 MINOR ENSMUSG00000030122 Ptms ENSMUST00000181150 - NO_TRANSLATION retained_intron ENSMUSG00000030122 Ptms ENSMUST00000203422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030122 Ptms ENSMUST00000032216 ENSMUSP00000032216 TRANSLATION protein_coding - CCDS39630.1 1 101.0 0.0 0.0 9.4 54.2 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000030122 Ptms ENSMUST00000204671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095351 Igkv3-2 ENSMUST00000103403 ENSMUSP00000100204 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.1 68.9 0.0 4,-1 0.8213 2 -2.0 PRINCIPAL:1 ENSMUSG00000053063 Clec12a ENSMUST00000147106 - NO_TRANSLATION retained_intron ENSMUSG00000053063 Clec12a ENSMUST00000151671 ENSMUSP00000118315 TRANSLATION protein_coding stop - 5 179.0 0.0 2.5 0.0 0.0 1.0 -4,-5 0.0018 2 -2.0 MINOR ENSMUSG00000053063 Clec12a ENSMUST00000133756 - NO_TRANSLATION retained_intron ENSMUSG00000053063 Clec12a ENSMUST00000065289 ENSMUSP00000063627 TRANSLATION protein_coding - CCDS20584.1 1 267.0 0.0 3.6 2.3 33.9 1.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000014543 Klra17 ENSMUST00000014687 ENSMUSP00000014687 TRANSLATION protein_coding - CCDS39664.1 1 273.0 4.0 5.0 0.1 246.4 1.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000014543 Klra17 ENSMUST00000122219 ENSMUSP00000114108 TRANSLATION protein_coding - CCDS39664.1 1 273.0 4.0 5.0 0.1 246.4 1.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029848 Stra8 ENSMUST00000185102 ENSMUSP00000139136 TRANSLATION protein_coding stop - 3 146.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0017 - -2.0 MINOR ENSMUSG00000029848 Stra8 ENSMUST00000031876 ENSMUSP00000031876 TRANSLATION protein_coding - CCDS39458.1 1 393.0 0.0 2.58 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000029848 Stra8 ENSMUST00000114997 ENSMUSP00000110649 TRANSLATION protein_coding - - 1 282.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0292 - 0.768 MINOR ENSMUSG00000029848 Stra8 ENSMUST00000114999 ENSMUSP00000110651 TRANSLATION protein_coding - CCDS39458.1 1 393.0 0.0 2.58 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000064330 Pde6h ENSMUST00000204382 ENSMUSP00000145119 TRANSLATION protein_coding - - 1 61.0 0.0 1.0 0.0 66.8 0.0 -4,-5 0.0 - 2.784 MINOR ENSMUSG00000064330 Pde6h ENSMUST00000057650 - NO_TRANSLATION retained_intron ENSMUSG00000064330 Pde6h ENSMUST00000204627 ENSMUSP00000145191 TRANSLATION protein_coding stop - 3 73.0 0.0 2.0 0.0 137.4 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000064330 Pde6h ENSMUST00000137768 ENSMUSP00000119246 TRANSLATION protein_coding - CCDS39686.1 1 83.0 0.0 2.33 19.5 163.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000114982 Vmn1r14 ENSMUST00000227209 ENSMUSP00000154267 TRANSLATION protein_coding - - - 259.0 0.0 0.0 0.0 179.6 7.0 -3,-5 0.0333 - 0.666 MINOR ENSMUSG00000114982 Vmn1r14 ENSMUST00000227768 ENSMUSP00000154375 TRANSLATION protein_coding - CCDS20177.1 - 303.0 0.0 0.0 0.0 189.4 8.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000114982 Vmn1r14 ENSMUST00000177435 ENSMUSP00000135207 TRANSLATION protein_coding - CCDS20177.1 - 303.0 0.0 0.0 0.0 189.4 8.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000114982 Vmn1r14 ENSMUST00000227574 ENSMUSP00000153807 TRANSLATION protein_coding - - - 259.0 0.0 0.0 0.0 179.6 7.0 -3,-5 0.0333 - 0.666 MINOR ENSMUSG00000114982 Vmn1r14 ENSMUST00000227884 ENSMUSP00000154520 TRANSLATION protein_coding - CCDS20177.1 - 303.0 0.0 0.0 0.0 189.4 8.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000041460 Cacna2d4 ENSMUST00000186176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041460 Cacna2d4 ENSMUST00000037434 ENSMUSP00000044660 TRANSLATION protein_coding - CCDS51886.1 2 1144.0 3.0 7.68925 0.1 304.8 0.0 -4,0 1.0 - 11.0 PRINCIPAL:2 ENSMUSG00000041460 Cacna2d4 ENSMUST00000186702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041460 Cacna2d4 ENSMUST00000186622 ENSMUSP00000140197 TRANSLATION protein_coding - - 1 1091.0 3.0 7.08925 0.3 304.8 0.0 -1,1 0.2154 - 9.8 MINOR ENSMUSG00000041460 Cacna2d4 ENSMUST00000238905 ENSMUSP00000158949 TRANSLATION protein_coding - - - 1116.0 3.0 7.68925 0.4 304.8 0.0 -1,1 0.396 - 11.0 ALTERNATIVE:2 ENSMUSG00000041460 Cacna2d4 ENSMUST00000188239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041460 Cacna2d4 ENSMUST00000190015 - NO_TRANSLATION retained_intron ENSMUSG00000041460 Cacna2d4 ENSMUST00000185965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041460 Cacna2d4 ENSMUST00000187222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041460 Cacna2d4 ENSMUST00000186203 - NO_TRANSLATION retained_intron ENSMUSG00000041460 Cacna2d4 ENSMUST00000191331 - NO_TRANSLATION retained_intron ENSMUSG00000095236 Or2f1b ENSMUST00000074499 ENSMUSP00000093654 TRANSLATION protein_coding - CCDS20078.1 - 317.0 0.0 1.0 12.5 176.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095236 Or2f1b ENSMUST00000215796 ENSMUSP00000149726 TRANSLATION protein_coding - CCDS20078.1 5 317.0 0.0 1.0 12.5 176.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056901 Tas2r102 ENSMUST00000069268 ENSMUSP00000068332 TRANSLATION protein_coding - CCDS20621.1 - 347.0 0.0 0.0 0.1 327.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000003477 Inmt ENSMUST00000003569 ENSMUSP00000003569 TRANSLATION protein_coding - CCDS20163.1 1 264.0 22.0 3.0 3.5 366.2 0.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000003477 Inmt ENSMUST00000152720 - NO_TRANSLATION retained_intron ENSMUSG00000030034 Ino80b ENSMUST00000032109 ENSMUSP00000032109 TRANSLATION protein_coding - CCDS39530.1 1 345.0 4.0 0.6 0.0 100.3 0.0 -4,-5 0.2488 3 16.0 MINOR ENSMUSG00000030034 Ino80b ENSMUST00000143814 ENSMUSP00000117556 TRANSLATION nonsense_mediated_decay - - 5 25.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000030034 Ino80b ENSMUST00000113935 ENSMUSP00000109568 TRANSLATION protein_coding - - 1 358.0 4.0 0.6 5.2 100.3 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000030034 Ino80b ENSMUST00000203085 - NO_TRANSLATION retained_intron ENSMUSG00000030213 Atf7ip ENSMUST00000185936 - NO_TRANSLATION retained_intron ENSMUSG00000030213 Atf7ip ENSMUST00000185724 ENSMUSP00000140458 TRANSLATION protein_coding stop - 5 559.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0042 2 -2.0 MINOR ENSMUSG00000030213 Atf7ip ENSMUST00000203178 ENSMUSP00000145190 TRANSLATION protein_coding start/stop - 3 345.0 0.0 1.439 0.0 133.4 0.0 -4,-5 0.0354 2 -2.0 MINOR ENSMUSG00000030213 Atf7ip ENSMUST00000032335 ENSMUSP00000032335 TRANSLATION protein_coding - CCDS20651.1 1 1306.0 0.0 1.439 0.0 333.9 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000030213 Atf7ip ENSMUST00000189535 ENSMUSP00000139446 TRANSLATION protein_coding stop - 3 107.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030213 Atf7ip ENSMUST00000203988 ENSMUSP00000145022 TRANSLATION protein_coding stop - 3 73.0 0.0 0.8 0.0 93.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030213 Atf7ip ENSMUST00000195743 - NO_TRANSLATION retained_intron ENSMUSG00000030213 Atf7ip ENSMUST00000187429 ENSMUSP00000140502 TRANSLATION protein_coding stop - 5 969.0 0.0 1.439 0.0 199.9 0.0 -4,-5 0.0627 5 -2.0 MINOR ENSMUSG00000030213 Atf7ip ENSMUST00000188805 - NO_TRANSLATION retained_intron ENSMUSG00000030213 Atf7ip ENSMUST00000186577 ENSMUSP00000140121 TRANSLATION protein_coding stop - 3 157.0 0.0 1.439 0.0 188.4 0.0 -4,-5 0.0315 1 -2.0 MINOR ENSMUSG00000030213 Atf7ip ENSMUST00000186742 ENSMUSP00000139908 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030213 Atf7ip ENSMUST00000185332 - NO_TRANSLATION retained_intron ENSMUSG00000091260 Vmn2r19 ENSMUST00000073948 ENSMUSP00000073604 TRANSLATION protein_coding - CCDS51897.1 5 854.0 5.0 2.76 0.1 380.0 0.0 1,-3 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000005225 Plekha8 ENSMUST00000101385 ENSMUSP00000098935 TRANSLATION protein_coding - CCDS39491.1 1 474.0 5.0 6.48 4.3 146.0 0.0 -4,-5 0.1083 4 12.311 MINOR ENSMUSG00000005225 Plekha8 ENSMUST00000119706 ENSMUSP00000112466 TRANSLATION protein_coding - CCDS51781.1 2 519.0 5.0 7.98 11.4 190.0 0.0 -4,-7 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000050241 Klre1 ENSMUST00000203865 - NO_TRANSLATION retained_intron ENSMUSG00000050241 Klre1 ENSMUST00000053708 ENSMUSP00000055779 TRANSLATION protein_coding - CCDS20589.1 1 226.0 0.0 3.3 0.4 46.6 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000050241 Klre1 ENSMUST00000203322 ENSMUSP00000145085 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038213 Tapbpl ENSMUST00000043422 ENSMUSP00000047105 TRANSLATION protein_coding - CCDS20547.1 1 451.0 0.0 2.16 0.4 77.6 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000037984 Neurod6 ENSMUST00000044767 ENSMUSP00000047016 TRANSLATION protein_coding - CCDS20168.1 1 337.0 0.0 0.5 24.9 194.2 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038600 Atp6v0a4 ENSMUST00000130816 - NO_TRANSLATION retained_intron ENSMUSG00000038600 Atp6v0a4 ENSMUST00000144752 - NO_TRANSLATION retained_intron ENSMUSG00000038600 Atp6v0a4 ENSMUST00000114908 ENSMUSP00000110558 TRANSLATION protein_coding - CCDS20010.1 1 833.0 0.0 16.98 9.0 1092.3 6.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000038600 Atp6v0a4 ENSMUST00000135594 - NO_TRANSLATION retained_intron ENSMUSG00000038600 Atp6v0a4 ENSMUST00000138385 - NO_TRANSLATION retained_intron ENSMUSG00000038600 Atp6v0a4 ENSMUST00000040259 ENSMUSP00000039381 TRANSLATION protein_coding - CCDS20010.1 1 833.0 0.0 16.98 9.0 1092.3 6.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000038600 Atp6v0a4 ENSMUST00000132736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035158 Mitf ENSMUST00000203938 ENSMUSP00000144988 TRANSLATION protein_coding - - 5 357.0 0.0 2.25 5.8 216.0 0.0 -4,-5 0.2375 1 8.946 MINOR ENSMUSG00000035158 Mitf ENSMUST00000101123 ENSMUSP00000098683 TRANSLATION protein_coding - CCDS51862.1 5 510.0 0.0 2.25 12.9 351.7 0.0 -4,-6 0.9451 3 11.172 ALTERNATIVE:1 ENSMUSG00000035158 Mitf ENSMUST00000148233 - NO_TRANSLATION retained_intron ENSMUSG00000035158 Mitf ENSMUST00000203884 ENSMUSP00000145132 TRANSLATION protein_coding - - 5 520.0 0.0 2.25 16.0 351.7 0.0 -4,-5 0.8225 3 12.0 ALTERNATIVE:1 ENSMUSG00000035158 Mitf ENSMUST00000043628 ENSMUSP00000044459 TRANSLATION protein_coding - CCDS20385.1 1 419.0 0.0 2.25 12.0 277.1 0.0 -4,-5 0.6224 2 10.598 MINOR ENSMUSG00000035158 Mitf ENSMUST00000043637 ENSMUSP00000044938 TRANSLATION protein_coding - CCDS51861.1 1 526.0 0.0 2.25 16.0 351.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000035158 Mitf ENSMUST00000139462 ENSMUSP00000123433 TRANSLATION nonsense_mediated_decay - - 2 105.0 0.0 0.0 0.0 92.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035158 Mitf ENSMUST00000113339 ENSMUSP00000108965 TRANSLATION protein_coding - - 5 501.0 0.0 2.25 0.0 351.7 0.0 -4,-7 0.0552 3 8.0 MINOR ENSMUSG00000024104 Washc2 ENSMUST00000204476 ENSMUSP00000144982 TRANSLATION protein_coding stop - 1 900.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0175 22 -2.0 MINOR ENSMUSG00000024104 Washc2 ENSMUST00000203523 ENSMUSP00000144923 TRANSLATION nonsense_mediated_decay - - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024104 Washc2 ENSMUST00000203980 - NO_TRANSLATION retained_intron ENSMUSG00000024104 Washc2 ENSMUST00000204495 - NO_TRANSLATION retained_intron ENSMUSG00000024104 Washc2 ENSMUST00000203802 - NO_TRANSLATION retained_intron ENSMUSG00000024104 Washc2 ENSMUST00000204283 ENSMUSP00000144703 TRANSLATION protein_coding stop - 5 1051.0 0.0 0.0 0.0 191.2 0.0 -4,-5 0.2176 23 -2.0 MINOR ENSMUSG00000024104 Washc2 ENSMUST00000204446 - NO_TRANSLATION retained_intron ENSMUSG00000024104 Washc2 ENSMUST00000203286 ENSMUSP00000145121 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024104 Washc2 ENSMUST00000036759 ENSMUSP00000038983 TRANSLATION protein_coding - CCDS20450.1 1 1334.0 0.0 0.0 0.0 191.2 0.0 -4,-6 1.0 29 6.0 PRINCIPAL:1 ENSMUSG00000024104 Washc2 ENSMUST00000203928 ENSMUSP00000145146 TRANSLATION protein_coding start/stop - 1 108.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024104 Washc2 ENSMUST00000204051 ENSMUSP00000144771 TRANSLATION protein_coding stop - 2 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0106 - -2.0 MINOR ENSMUSG00000024104 Washc2 ENSMUST00000203161 - NO_TRANSLATION retained_intron ENSMUSG00000024104 Washc2 ENSMUST00000203297 - NO_TRANSLATION retained_intron ENSMUSG00000030049 Gkn2 ENSMUST00000032128 ENSMUSP00000032128 TRANSLATION protein_coding - CCDS39546.1 1 184.0 0.0 3.75 11.8 86.0 0.0 3,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000076535 Igkv1-88 ENSMUST00000103336 ENSMUSP00000100137 TRANSLATION IG_V_gene stop - - 120.0 3.0 1.0 0.0 53.8 0.0 4,-1 0.833 - -2.0 PRINCIPAL:1 ENSMUSG00000079652 Garin1a ENSMUST00000167131 ENSMUSP00000132049 TRANSLATION protein_coding stop - 3 176.0 0.0 2.3 0.0 91.9 0.0 -4,-7 0.0067 - -2.0 MINOR ENSMUSG00000079652 Garin1a ENSMUST00000167608 ENSMUSP00000125895 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 0.6 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000079652 Garin1a ENSMUST00000115286 ENSMUSP00000110941 TRANSLATION protein_coding - CCDS51735.1 1 297.0 0.0 3.065 5.7 91.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096336 Igkv1-135 ENSMUST00000103303 ENSMUSP00000100104 TRANSLATION IG_V_gene stop - - 120.0 0.0 1.0 0.0 55.0 0.0 4,-1 0.8257 1 -2.0 PRINCIPAL:1 ENSMUSG00000005364 Il5ra ENSMUST00000167925 ENSMUSP00000129781 TRANSLATION protein_coding - CCDS20396.1 5 415.0 0.0 6.665 3.9 102.1 1.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000005364 Il5ra ENSMUST00000204659 ENSMUSP00000144718 TRANSLATION protein_coding - CCDS20396.1 1 415.0 0.0 6.665 3.9 102.1 1.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000005364 Il5ra ENSMUST00000205004 ENSMUSP00000144825 TRANSLATION protein_coding - - 1 76.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000030329 Pianp ENSMUST00000162170 ENSMUSP00000123940 TRANSLATION protein_coding - CCDS20540.1 1 278.0 0.0 0.75 0.7 33.4 1.0 4,-1 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000030329 Pianp ENSMUST00000032479 ENSMUSP00000032479 TRANSLATION protein_coding - CCDS20540.1 1 278.0 0.0 0.75 0.7 33.4 1.0 4,-1 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000030329 Pianp ENSMUST00000160704 ENSMUSP00000124160 TRANSLATION protein_coding - CCDS20540.1 1 278.0 0.0 0.75 0.7 33.4 1.0 4,-1 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000030329 Pianp ENSMUST00000161292 ENSMUSP00000125600 TRANSLATION protein_coding stop - 3 72.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.002 - -2.0 MINOR ENSMUSG00000030329 Pianp ENSMUST00000160666 ENSMUSP00000125328 TRANSLATION protein_coding start/stop - 1 69.0 0.0 0.75 0.0 0.0 1.0 -4,-5 0.045 - -2.0 MINOR ENSMUSG00000030329 Pianp ENSMUST00000159391 ENSMUSP00000124024 TRANSLATION protein_coding stop - 1 167.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.002 - -2.0 MINOR ENSMUSG00000030329 Pianp ENSMUST00000162000 ENSMUSP00000145297 TRANSLATION protein_coding - - 5 272.0 0.0 0.75 0.0 33.4 1.0 4,-1 0.2667 1 6.0 ALTERNATIVE:2 ENSMUSG00000071149 Tas2r115 ENSMUST00000095394 ENSMUSP00000093043 TRANSLATION protein_coding - CCDS20619.1 - 310.0 0.0 0.0 0.3 277.1 0.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030166 Rad52 ENSMUST00000032269 ENSMUSP00000032269 TRANSLATION protein_coding - CCDS20477.1 1 419.0 0.0 4.85 0.4 163.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000030166 Rad52 ENSMUST00000161860 - NO_TRANSLATION retained_intron ENSMUSG00000030166 Rad52 ENSMUST00000162255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030166 Rad52 ENSMUST00000160558 - NO_TRANSLATION retained_intron ENSMUSG00000030166 Rad52 ENSMUST00000161045 ENSMUSP00000125559 TRANSLATION nonsense_mediated_decay - - 1 80.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030166 Rad52 ENSMUST00000204319 - NO_TRANSLATION retained_intron ENSMUSG00000030166 Rad52 ENSMUST00000162461 ENSMUSP00000125502 TRANSLATION protein_coding - CCDS51887.1 1 420.0 0.0 4.85 0.4 163.0 0.0 -4,-5 0.677 - 8.0 ALTERNATIVE:2 ENSMUSG00000030166 Rad52 ENSMUST00000159356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030166 Rad52 ENSMUST00000160877 - NO_TRANSLATION retained_intron ENSMUSG00000030166 Rad52 ENSMUST00000161816 - NO_TRANSLATION retained_intron ENSMUSG00000030166 Rad52 ENSMUST00000162205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030166 Rad52 ENSMUST00000162590 - NO_TRANSLATION retained_intron ENSMUSG00000030166 Rad52 ENSMUST00000159291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030166 Rad52 ENSMUST00000162009 - NO_TRANSLATION retained_intron ENSMUSG00000042213 Zfand4 ENSMUST00000221069 ENSMUSP00000152313 TRANSLATION protein_coding - - 3 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000042213 Zfand4 ENSMUST00000220845 ENSMUSP00000152078 TRANSLATION nonsense_mediated_decay - - 5 100.0 0.0 0.56 0.0 0.0 0.0 -4,-7 0.0004 - -2.0 MINOR ENSMUSG00000042213 Zfand4 ENSMUST00000222819 ENSMUSP00000152213 TRANSLATION nonsense_mediated_decay - - 1 94.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042213 Zfand4 ENSMUST00000223495 ENSMUSP00000152064 TRANSLATION protein_coding - - 5 232.0 0.0 1.994 0.0 63.3 0.0 -4,-7 0.0015 - 5.802 MINOR ENSMUSG00000042213 Zfand4 ENSMUST00000222494 ENSMUSP00000152710 TRANSLATION nonsense_mediated_decay - - 1 115.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042213 Zfand4 ENSMUST00000221239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042213 Zfand4 ENSMUST00000222144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042213 Zfand4 ENSMUST00000221824 - NO_TRANSLATION retained_intron ENSMUSG00000042213 Zfand4 ENSMUST00000036503 ENSMUSP00000040057 TRANSLATION protein_coding - - 5 739.0 8.0 3.994 5.9 99.9 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000059878 Zfp422 ENSMUST00000057540 ENSMUSP00000084926 TRANSLATION protein_coding - CCDS20459.1 1 237.0 20.0 1.0 1.8 130.3 0.0 -4,-7 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000059878 Zfp422 ENSMUST00000112880 ENSMUSP00000108501 TRANSLATION protein_coding - CCDS20459.1 1 237.0 20.0 1.0 1.8 130.3 0.0 -4,-7 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000059878 Zfp422 ENSMUST00000079749 ENSMUSP00000078685 TRANSLATION protein_coding - CCDS20459.1 1 237.0 20.0 1.0 1.8 130.3 0.0 -4,-7 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000059878 Zfp422 ENSMUST00000204557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063975 Slco1a5 ENSMUST00000111825 ENSMUSP00000137607 TRANSLATION protein_coding - CCDS57464.1 1 670.0 0.0 0.0 11.8 629.2 13.0 -4,-7 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000063975 Slco1a5 ENSMUST00000081380 ENSMUSP00000080116 TRANSLATION protein_coding - CCDS57464.1 1 670.0 0.0 0.0 11.8 629.2 13.0 -4,-7 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000063975 Slco1a5 ENSMUST00000111822 - NO_TRANSLATION retained_intron ENSMUSG00000063975 Slco1a5 ENSMUST00000153268 ENSMUSP00000124829 TRANSLATION nonsense_mediated_decay - - 5 95.0 0.0 0.0 0.0 38.8 2.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000063975 Slco1a5 ENSMUST00000128446 ENSMUSP00000124987 TRANSLATION protein_coding stop - 5 157.0 0.0 0.0 0.0 177.4 3.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030247 Kcnj8 ENSMUST00000032374 ENSMUSP00000032374 TRANSLATION protein_coding - - 1 127.0 0.0 0.8 0.0 98.5 1.0 -4,-6 0.0018 - 2.256 MINOR ENSMUSG00000030247 Kcnj8 ENSMUST00000203945 ENSMUSP00000145440 TRANSLATION protein_coding - CCDS20685.1 1 424.0 0.0 2.13 11.5 462.6 2.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000105630 Gm42543 ENSMUST00000198756 ENSMUSP00000142898 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.25 0.0 45.7 0.0 3,-2 0.8177 - -2.0 PRINCIPAL:1 ENSMUSG00000030000 Add2 ENSMUST00000203366 ENSMUSP00000144849 TRANSLATION protein_coding - CCDS85085.1 5 562.0 3.0 2.6 0.1 127.9 0.0 -4,-5 0.2439 15 11.0 ALTERNATIVE:2 ENSMUSG00000030000 Add2 ENSMUST00000203529 - NO_TRANSLATION retained_intron ENSMUSG00000030000 Add2 ENSMUST00000203724 ENSMUSP00000145296 TRANSLATION protein_coding - CCDS20308.1 1 725.0 3.0 2.6 0.1 127.9 0.0 -4,-5 1.0 22 11.0 PRINCIPAL:2 ENSMUSG00000030000 Add2 ENSMUST00000203196 ENSMUSP00000145104 TRANSLATION protein_coding - CCDS85085.1 1 562.0 3.0 2.6 0.1 127.9 0.0 -4,-5 0.2439 15 11.0 ALTERNATIVE:2 ENSMUSG00000030000 Add2 ENSMUST00000203279 ENSMUSP00000145452 TRANSLATION protein_coding - - 2 477.0 2.0 2.0 0.0 86.0 0.0 -4,-5 0.0 14 6.615 MINOR ENSMUSG00000030000 Add2 ENSMUST00000203445 ENSMUSP00000145494 TRANSLATION protein_coding stop - 3 184.0 0.0 0.0 0.0 22.5 0.0 -4,-5 0.0004 5 -2.0 MINOR ENSMUSG00000030000 Add2 ENSMUST00000204059 ENSMUSP00000145160 TRANSLATION protein_coding - CCDS20308.1 1 725.0 3.0 2.6 0.1 127.9 0.0 -4,-5 1.0 22 11.0 PRINCIPAL:2 ENSMUSG00000030000 Add2 ENSMUST00000203786 ENSMUSP00000144694 TRANSLATION protein_coding - CCDS20308.1 1 725.0 3.0 2.6 0.1 127.9 0.0 -4,-5 1.0 22 11.0 PRINCIPAL:2 ENSMUSG00000030000 Add2 ENSMUST00000032069 ENSMUSP00000032069 TRANSLATION protein_coding - CCDS20308.1 1 725.0 3.0 2.6 0.1 127.9 0.0 -4,-5 1.0 22 11.0 PRINCIPAL:2 ENSMUSG00000030000 Add2 ENSMUST00000205034 ENSMUSP00000145034 TRANSLATION protein_coding - CCDS85085.1 1 562.0 3.0 2.6 0.1 127.9 0.0 -4,-5 0.2439 15 11.0 ALTERNATIVE:2 ENSMUSG00000093906 Igkv9-129 ENSMUST00000200578 ENSMUSP00000142382 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.1 0.0 45.6 0.0 3,-1 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000079598 Clec2l ENSMUST00000238216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079598 Clec2l ENSMUST00000114874 ENSMUSP00000110524 TRANSLATION protein_coding - CCDS57419.1 2 211.0 3.0 2.08 0.1 52.8 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000051331 Cacna1c ENSMUST00000187849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051331 Cacna1c ENSMUST00000188181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051331 Cacna1c ENSMUST00000187386 ENSMUSP00000140341 TRANSLATION protein_coding - - 5 2135.0 0.0 28.5665 0.0 1231.9 50.0 -4,-6 0.3555 10 4.25 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000219833 ENSMUSP00000151462 TRANSLATION protein_coding start - 5 2005.0 0.0 26.8065 0.0 1207.2 51.0 -2,-5 0.2005 9 -2.0 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000189389 ENSMUSP00000139855 TRANSLATION protein_coding - - 5 2167.0 0.0 29.6915 3.5 1254.2 50.0 -4,-5 0.9746 10 7.69 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000185345 ENSMUSP00000140833 TRANSLATION protein_coding - - 5 2159.0 0.0 29.6915 1.0 1215.2 50.0 -4,-5 0.4274 10 6.5 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000188078 ENSMUSP00000140415 TRANSLATION protein_coding - - 5 2139.0 0.0 28.5665 5.2 1242.6 50.0 -4,-5 0.9425 10 6.25 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000188106 ENSMUSP00000140886 TRANSLATION protein_coding - CCDS80588.1 1 2153.0 0.0 28.484 3.2 1240.4 50.0 -4,-5 0.9545 10 5.136 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000191196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051331 Cacna1c ENSMUST00000075591 ENSMUSP00000075021 TRANSLATION protein_coding - CCDS80590.1 1 2139.0 0.0 28.2065 5.2 1237.1 51.0 -4,-5 1.0 10 5.53 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000219223 ENSMUSP00000151391 TRANSLATION protein_coding start - 5 1969.0 0.0 26.724 0.0 1197.1 51.0 -2,-5 0.1782 9 -2.0 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000219018 ENSMUSP00000151863 TRANSLATION protein_coding start - 5 1980.0 0.0 26.8065 0.0 1208.2 51.0 -2,-5 0.1927 9 -2.0 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000189057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051331 Cacna1c ENSMUST00000078320 ENSMUSP00000077433 TRANSLATION protein_coding - CCDS80590.1 1 2139.0 0.0 28.2065 5.2 1237.1 51.0 -4,-5 1.0 10 5.53 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000190285 ENSMUSP00000141015 TRANSLATION protein_coding - CCDS80595.1 1 2194.0 0.0 28.2065 3.1 1236.1 51.0 -4,-7 0.8512 10 4.53 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000220022 ENSMUSP00000151458 TRANSLATION protein_coding start - 5 2063.0 0.0 26.7915 0.0 1199.8 50.0 -2,-5 0.1959 9 -2.0 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000187940 ENSMUSP00000141033 TRANSLATION protein_coding - CCDS80593.1 1 2169.0 0.0 28.5815 4.1 1226.4 51.0 -4,-7 0.9036 10 5.756 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000189520 ENSMUSP00000140220 TRANSLATION protein_coding - - 5 2156.0 0.0 29.234 2.4 1253.1 50.0 -4,-5 0.7469 10 6.254 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000112790 ENSMUSP00000108410 TRANSLATION protein_coding - CCDS80589.1 1 2139.0 0.0 28.2065 4.1 1227.4 51.0 -4,-5 0.8647 10 5.006 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000188522 ENSMUSP00000140920 TRANSLATION protein_coding - - 5 2164.0 0.0 28.5665 4.2 1231.9 50.0 -4,-5 0.8637 10 5.774 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000188865 ENSMUSP00000139981 TRANSLATION protein_coding - - 5 2139.0 0.0 28.5665 5.2 1232.9 50.0 -4,-5 0.8865 10 6.25 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000187474 ENSMUSP00000140961 TRANSLATION protein_coding - CCDS80594.1 1 2169.0 0.0 28.5815 4.1 1236.1 51.0 -4,-7 0.9366 10 5.756 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000186889 ENSMUSP00000140056 TRANSLATION protein_coding - CCDS80592.1 1 2169.0 0.0 28.5815 4.1 1237.1 51.0 -4,-7 0.927 10 5.756 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000189930 - NO_TRANSLATION retained_intron ENSMUSG00000051331 Cacna1c ENSMUST00000112825 ENSMUSP00000108444 TRANSLATION protein_coding - CCDS71821.1 1 1869.0 0.0 25.439 0.0 1064.6 45.0 -1,-5 0.2322 9 2.0 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000239204 ENSMUSP00000159252 TRANSLATION protein_coding - - - 255.0 0.0 1.4 0.0 0.0 0.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000112793 ENSMUSP00000108413 TRANSLATION protein_coding - CCDS80587.1 1 2222.0 0.0 28.5665 0.0 1228.9 50.0 -4,-5 0.3954 10 4.25 MINOR ENSMUSG00000051331 Cacna1c ENSMUST00000187317 ENSMUSP00000140693 TRANSLATION protein_coding - - 5 2187.0 0.0 30.4415 3.0 1237.5 50.0 -4,-5 0.9968 10 8.952 PRINCIPAL:1 ENSMUSG00000029775 Klhdc10 ENSMUST00000068259 ENSMUSP00000069669 TRANSLATION protein_coding - CCDS19971.1 1 439.0 0.0 6.06 9.9 132.8 0.0 -4,-7 1.0 3 11.0 PRINCIPAL:4 ENSMUSG00000029775 Klhdc10 ENSMUST00000123494 ENSMUSP00000145442 TRANSLATION protein_coding stop - 5 157.0 0.0 3.25 0.0 59.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000029775 Klhdc10 ENSMUST00000068240 ENSMUSP00000064594 TRANSLATION protein_coding - CCDS80509.1 1 410.0 0.0 6.06 8.8 132.8 0.0 -4,-7 0.9306 3 10.628 ALTERNATIVE:1 ENSMUSG00000029775 Klhdc10 ENSMUST00000144272 ENSMUSP00000145063 TRANSLATION protein_coding - - 1 299.0 0.0 5.66 1.0 105.2 0.0 -4,-7 0.0271 2 7.202 MINOR ENSMUSG00000029775 Klhdc10 ENSMUST00000132581 ENSMUSP00000143839 TRANSLATION protein_coding start/stop - 5 313.0 0.0 3.86 0.0 106.3 0.0 -4,-7 0.0037 1 -2.0 MINOR ENSMUSG00000029775 Klhdc10 ENSMUST00000150854 - NO_TRANSLATION retained_intron ENSMUSG00000029775 Klhdc10 ENSMUST00000135566 ENSMUSP00000144878 TRANSLATION protein_coding stop - 3 54.0 0.0 1.1 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030224 Strap ENSMUST00000064910 ENSMUSP00000068267 TRANSLATION protein_coding - CCDS51945.1 1 350.0 0.0 7.95 17.8 93.5 0.0 -4,-2 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000030224 Strap ENSMUST00000154698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030224 Strap ENSMUST00000137235 - NO_TRANSLATION retained_intron ENSMUSG00000044155 Lsm8 ENSMUST00000136982 - NO_TRANSLATION retained_intron ENSMUSG00000044155 Lsm8 ENSMUST00000201141 ENSMUSP00000144884 TRANSLATION protein_coding - - 3 100.0 5.0 1.75 0.0 47.6 0.0 -4,-5 0.0121 3 13.202 MINOR ENSMUSG00000044155 Lsm8 ENSMUST00000128526 - NO_TRANSLATION retained_intron ENSMUSG00000044155 Lsm8 ENSMUST00000056398 ENSMUSP00000057238 TRANSLATION protein_coding - CCDS39433.1 1 96.0 5.0 2.58 36.9 69.1 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000004655 Aqp1 ENSMUST00000004774 ENSMUSP00000004774 TRANSLATION protein_coding - CCDS20164.1 1 269.0 0.0 3.75 29.4 278.4 0.0 2,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000030123 Plxnd1 ENSMUST00000203628 - NO_TRANSLATION retained_intron ENSMUSG00000030123 Plxnd1 ENSMUST00000205003 - NO_TRANSLATION retained_intron ENSMUSG00000030123 Plxnd1 ENSMUST00000123165 - NO_TRANSLATION retained_intron ENSMUSG00000030123 Plxnd1 ENSMUST00000015511 ENSMUSP00000015511 TRANSLATION protein_coding - CCDS20448.1 1 1925.0 0.0 20.438 3.5 1108.6 0.0 -1,3 1.0 36 13.0 PRINCIPAL:1 ENSMUSG00000030123 Plxnd1 ENSMUST00000131590 ENSMUSP00000115650 TRANSLATION protein_coding start/stop - 3 233.0 0.0 3.31 0.0 67.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000023403 Stk31 ENSMUST00000163954 ENSMUSP00000127545 TRANSLATION protein_coding - - 5 995.0 0.0 3.741 2.3 138.6 0.0 -3,-7 0.25 4 11.544 MINOR ENSMUSG00000023403 Stk31 ENSMUST00000167846 ENSMUSP00000130561 TRANSLATION protein_coding start - 5 367.0 0.0 1.875 0.0 29.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023403 Stk31 ENSMUST00000024171 ENSMUSP00000024171 TRANSLATION protein_coding - CCDS39487.1 1 1018.0 0.0 4.041 6.1 144.7 0.0 -3,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000023403 Stk31 ENSMUST00000172459 ENSMUSP00000132896 TRANSLATION protein_coding - - 5 973.0 0.0 4.041 0.0 144.7 0.0 -3,-7 0.1125 3 12.0 MINOR ENSMUSG00000089997 Cfap92 ENSMUST00000238521 ENSMUSP00000158817 TRANSLATION protein_coding - - - 1158.0 0.0 1.8 0.0 134.3 0.0 -4,-5 0.9763 - 12.0 PRINCIPAL:1 ENSMUSG00000089997 Cfap92 ENSMUST00000162547 ENSMUSP00000158660 TRANSLATION nonsense_mediated_decay start - 1 400.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000030321 Efcab12 ENSMUST00000124531 ENSMUSP00000139385 TRANSLATION nonsense_mediated_decay - - 2 397.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0873 - -2.0 MINOR ENSMUSG00000030321 Efcab12 ENSMUST00000184428 ENSMUSP00000139144 TRANSLATION protein_coding - CCDS71816.1 5 673.0 0.0 0.5 0.1 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000049001 Ndnf ENSMUST00000169795 - NO_TRANSLATION retained_intron ENSMUSG00000049001 Ndnf ENSMUST00000054351 ENSMUSP00000051297 TRANSLATION protein_coding - CCDS20207.1 1 568.0 0.0 0.0 6.6 101.8 0.0 4,-1 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000040613 Apobec1 ENSMUST00000112587 ENSMUSP00000108206 TRANSLATION protein_coding - CCDS20498.1 5 229.0 5.0 5.212 0.0 104.4 0.0 -4,-7 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000040613 Apobec1 ENSMUST00000112585 ENSMUSP00000108204 TRANSLATION protein_coding - CCDS20498.1 1 229.0 5.0 5.212 0.0 104.4 0.0 -4,-7 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000040613 Apobec1 ENSMUST00000203204 ENSMUSP00000145154 TRANSLATION protein_coding stop - 2 113.0 5.0 2.132 0.0 51.5 0.0 -4,-7 0.0008 1 -2.0 MINOR ENSMUSG00000040613 Apobec1 ENSMUST00000203309 ENSMUSP00000145417 TRANSLATION protein_coding stop - 2 121.0 5.0 2.462 0.0 63.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000040613 Apobec1 ENSMUST00000204035 - NO_TRANSLATION retained_intron ENSMUSG00000040613 Apobec1 ENSMUST00000203197 ENSMUSP00000144996 TRANSLATION protein_coding stop - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040613 Apobec1 ENSMUST00000147760 ENSMUSP00000116238 TRANSLATION protein_coding stop - 5 25.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040613 Apobec1 ENSMUST00000112586 ENSMUSP00000108205 TRANSLATION protein_coding - CCDS20498.1 1 229.0 5.0 5.212 0.0 104.4 0.0 -4,-7 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000040613 Apobec1 ENSMUST00000143356 - NO_TRANSLATION retained_intron ENSMUSG00000025608 Podxl ENSMUST00000136877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025608 Podxl ENSMUST00000026698 ENSMUSP00000026698 TRANSLATION protein_coding - CCDS19983.1 1 503.0 0.0 0.0 0.0 233.9 0.0 4,-1 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000030060 Hmces ENSMUST00000124551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030060 Hmces ENSMUST00000204614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030060 Hmces ENSMUST00000132651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030060 Hmces ENSMUST00000113606 ENSMUSP00000109236 TRANSLATION protein_coding - CCDS39551.1 1 353.0 0.0 4.33 5.8 221.6 0.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000030060 Hmces ENSMUST00000204232 ENSMUSP00000145504 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000030060 Hmces ENSMUST00000032141 ENSMUSP00000032141 TRANSLATION protein_coding - CCDS39551.1 1 353.0 0.0 4.33 5.8 221.6 0.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000030060 Hmces ENSMUST00000148914 - NO_TRANSLATION retained_intron ENSMUSG00000061436 Hipk2 ENSMUST00000159307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061436 Hipk2 ENSMUST00000160360 ENSMUSP00000125500 TRANSLATION protein_coding - CCDS80526.1 1 1168.0 17.0 5.25 5.4 173.3 0.0 -4,-7 0.8884 - 13.404 MINOR ENSMUSG00000061436 Hipk2 ENSMUST00000114855 - NO_TRANSLATION retained_intron ENSMUSG00000061436 Hipk2 ENSMUST00000160962 ENSMUSP00000125572 TRANSLATION protein_coding - CCDS51752.1 1 1161.0 17.0 5.25 7.7 173.3 0.0 -4,-7 0.8987 - 14.139 ALTERNATIVE:1 ENSMUSG00000061436 Hipk2 ENSMUST00000162359 ENSMUSP00000125150 TRANSLATION protein_coding - CCDS80527.1 1 1169.0 17.0 5.25 10.4 173.3 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:4 ENSMUSG00000061436 Hipk2 ENSMUST00000159894 - NO_TRANSLATION retained_intron ENSMUSG00000061436 Hipk2 ENSMUST00000161779 ENSMUSP00000124133 TRANSLATION protein_coding - CCDS20017.2 1 1196.0 17.0 5.25 7.4 173.3 0.0 -4,-7 0.8979 - 14.043 ALTERNATIVE:1 ENSMUSG00000053004 Hrh1 ENSMUST00000088987 ENSMUSP00000086383 TRANSLATION protein_coding - CCDS20435.1 1 488.0 0.0 0.8 9.2 229.5 7.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000053004 Hrh1 ENSMUST00000161650 ENSMUSP00000124460 TRANSLATION protein_coding - CCDS20435.1 1 488.0 0.0 0.8 9.2 229.5 7.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000053004 Hrh1 ENSMUST00000161220 ENSMUSP00000124037 TRANSLATION protein_coding - CCDS20435.1 1 488.0 0.0 0.8 9.2 229.5 7.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000053004 Hrh1 ENSMUST00000160212 ENSMUSP00000125316 TRANSLATION protein_coding stop - 2 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053004 Hrh1 ENSMUST00000160780 ENSMUSP00000124320 TRANSLATION protein_coding - CCDS20435.1 5 488.0 0.0 0.8 9.2 229.5 7.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000029817 Tra2a ENSMUST00000203820 ENSMUSP00000144908 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029817 Tra2a ENSMUST00000204189 ENSMUSP00000145039 TRANSLATION protein_coding - CCDS85044.1 1 280.0 0.0 2.0 0.1 69.7 0.0 -4,-5 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000029817 Tra2a ENSMUST00000204818 - NO_TRANSLATION retained_intron ENSMUSG00000029817 Tra2a ENSMUST00000204013 - NO_TRANSLATION retained_intron ENSMUSG00000029817 Tra2a ENSMUST00000031841 ENSMUSP00000031841 TRANSLATION protein_coding - CCDS39486.1 5 282.0 0.0 2.0 0.1 69.7 0.0 -4,-5 0.498 5 8.0 ALTERNATIVE:2 ENSMUSG00000009376 Met ENSMUST00000145473 - NO_TRANSLATION retained_intron ENSMUSG00000009376 Met ENSMUST00000080469 ENSMUSP00000079324 TRANSLATION protein_coding - CCDS19925.1 1 1379.0 18.0 16.576 15.5 652.5 1.0 4,-1 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000009376 Met ENSMUST00000115443 ENSMUSP00000111103 TRANSLATION protein_coding - CCDS19925.1 5 1379.0 18.0 16.576 15.5 652.5 1.0 4,-1 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000009376 Met ENSMUST00000140070 ENSMUSP00000117856 TRANSLATION protein_coding stop - 3 169.0 0.0 1.0 0.0 55.0 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000009376 Met ENSMUST00000152802 ENSMUSP00000118755 TRANSLATION protein_coding start - 5 214.0 0.0 1.646 0.0 34.6 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000009376 Met ENSMUST00000148903 ENSMUSP00000121923 TRANSLATION protein_coding start/stop - 3 157.0 0.0 0.866 0.0 0.0 1.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000009376 Met ENSMUST00000115442 ENSMUSP00000111102 TRANSLATION protein_coding - CCDS19925.1 5 1379.0 18.0 16.576 15.5 652.5 1.0 4,-1 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000062519 Zfp398 ENSMUST00000079881 ENSMUSP00000078806 TRANSLATION protein_coding - CCDS20099.1 1 643.0 31.0 0.6 5.6 234.6 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000062519 Zfp398 ENSMUST00000146202 - NO_TRANSLATION retained_intron ENSMUSG00000062519 Zfp398 ENSMUST00000114598 ENSMUSP00000110245 TRANSLATION protein_coding - CCDS39476.1 1 511.0 31.0 0.6 0.1 203.2 0.0 -4,-5 0.2207 1 16.116 MINOR ENSMUSG00000034783 Cd207 ENSMUST00000037882 ENSMUSP00000040746 TRANSLATION protein_coding - CCDS39534.1 1 331.0 12.0 4.0 0.8 81.8 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000095633 Igkv4-58 ENSMUST00000103355 ENSMUSP00000100156 TRANSLATION IG_V_gene start/stop - - 97.0 0.0 1.0 0.0 61.5 0.0 -4,-6 0.0225 1 -2.0 ALTERNATIVE:2 ENSMUSG00000095633 Igkv4-58 ENSMUST00000197448 ENSMUSP00000143579 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.0 61.5 0.0 -1,-4 0.7809 1 -2.0 PRINCIPAL:5 ENSMUSG00000001424 Snd1 ENSMUST00000171532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001424 Snd1 ENSMUST00000001460 ENSMUSP00000001460 TRANSLATION protein_coding - CCDS19953.1 1 910.0 0.0 21.39 11.0 322.0 0.0 -4,-2 1.0 43 15.0 PRINCIPAL:1 ENSMUSG00000001424 Snd1 ENSMUST00000169321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001424 Snd1 ENSMUST00000171195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001424 Snd1 ENSMUST00000167201 ENSMUSP00000128737 TRANSLATION protein_coding - - 1 608.0 0.0 14.79 0.0 147.7 0.0 -4,-2 0.0002 29 0.0 MINOR ENSMUSG00000001424 Snd1 ENSMUST00000169579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001424 Snd1 ENSMUST00000166136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001424 Snd1 ENSMUST00000163772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001424 Snd1 ENSMUST00000165151 - NO_TRANSLATION retained_intron ENSMUSG00000001424 Snd1 ENSMUST00000183161 - NO_TRANSLATION retained_intron ENSMUSG00000001424 Snd1 ENSMUST00000164915 ENSMUSP00000127317 TRANSLATION nonsense_mediated_decay - - 1 262.0 0.0 2.78 0.0 0.0 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000001424 Snd1 ENSMUST00000168362 ENSMUSP00000126382 TRANSLATION protein_coding stop - 5 10.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0125 - -2.0 MINOR ENSMUSG00000045613 Chrm2 ENSMUST00000169004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045613 Chrm2 ENSMUST00000172278 ENSMUSP00000130874 TRANSLATION protein_coding - CCDS20004.1 1 466.0 0.0 0.8 10.1 248.7 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000056832 Ift56 ENSMUST00000162554 ENSMUSP00000124369 TRANSLATION protein_coding - CCDS51750.1 1 554.0 0.0 1.048 33.6 30.3 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000056832 Ift56 ENSMUST00000159145 ENSMUSP00000124873 TRANSLATION nonsense_mediated_decay - - 1 203.0 0.0 0.8 0.0 30.3 0.0 -4,-6 0.0123 1 -2.0 MINOR ENSMUSG00000056832 Ift56 ENSMUST00000161751 ENSMUSP00000124271 TRANSLATION protein_coding stop - 3 210.0 0.0 1.048 0.0 30.3 0.0 -4,-6 0.0349 3 -2.0 MINOR ENSMUSG00000056832 Ift56 ENSMUST00000162486 - NO_TRANSLATION retained_intron ENSMUSG00000056832 Ift56 ENSMUST00000160215 ENSMUSP00000125097 TRANSLATION nonsense_mediated_decay - - 3 101.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000076605 Igkj2 ENSMUST00000103406 - NO_TRANSLATION processed_transcript ENSMUSG00000076605 Igkj2 ENSMUST00000198234 ENSMUSP00000142356 TRANSLATION IG_J_gene start/stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000072772 Grcc10 ENSMUST00000004389 ENSMUSP00000004389 TRANSLATION protein_coding - CCDS20525.1 1 126.0 0.0 2.3 6.9 134.0 0.0 -3,-4 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000072772 Grcc10 ENSMUST00000140423 - NO_TRANSLATION retained_intron ENSMUSG00000072772 Grcc10 ENSMUST00000137318 - NO_TRANSLATION retained_intron ENSMUSG00000072772 Grcc10 ENSMUST00000129823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030087 Klf15 ENSMUST00000205136 ENSMUSP00000145043 TRANSLATION protein_coding start - 1 153.0 7.0 0.8 0.0 17.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030087 Klf15 ENSMUST00000032174 ENSMUSP00000032174 TRANSLATION protein_coding - CCDS20360.1 1 415.0 12.0 1.2 8.3 65.6 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000030087 Klf15 ENSMUST00000203607 ENSMUSP00000144808 TRANSLATION protein_coding - CCDS20360.1 1 415.0 12.0 1.2 8.3 65.6 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000030087 Klf15 ENSMUST00000203039 ENSMUSP00000144962 TRANSLATION protein_coding - CCDS20360.1 5 415.0 12.0 1.2 8.3 65.6 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000030087 Klf15 ENSMUST00000113530 ENSMUSP00000109158 TRANSLATION protein_coding - CCDS20360.1 5 415.0 12.0 1.2 8.3 65.6 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000096632 Igkv9-124 ENSMUST00000196768 ENSMUSP00000142468 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.16 0.0 52.8 0.0 3,-1 0.8223 3 -2.0 PRINCIPAL:5 ENSMUSG00000096632 Igkv9-124 ENSMUST00000103312 ENSMUSP00000100113 TRANSLATION IG_V_gene start/stop - - 95.0 0.0 1.0 0.0 52.8 0.0 -4,-6 0.022 3 -2.0 ALTERNATIVE:2 ENSMUSG00000072704 Smim10l1 ENSMUST00000100864 ENSMUSP00000098428 TRANSLATION protein_coding - CCDS51934.1 - 67.0 0.0 0.0 9.2 129.9 0.0 -1,-4 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000072704 Smim10l1 ENSMUST00000186945 ENSMUSP00000139534 TRANSLATION protein_coding start - 2 49.0 0.0 0.0 0.0 89.2 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000072704 Smim10l1 ENSMUST00000187237 ENSMUSP00000139832 TRANSLATION nonsense_mediated_decay - - 2 75.0 0.0 0.0 0.0 122.0 0.0 -2,-5 0.0578 2 -2.0 MINOR ENSMUSG00000072704 Smim10l1 ENSMUST00000191462 ENSMUSP00000139452 TRANSLATION protein_coding - CCDS80626.1 3 89.0 0.0 0.0 0.1 122.0 0.0 -2,-5 0.0873 2 5.526 MINOR ENSMUSG00000047749 Zc3hav1l ENSMUST00000058524 ENSMUSP00000062475 TRANSLATION protein_coding - CCDS20011.1 1 296.0 16.0 1.46 1.4 0.0 0.0 -3,-6 0.9463 6 13.0 PRINCIPAL:1 ENSMUSG00000051586 Mical3 ENSMUST00000207993 ENSMUSP00000146780 TRANSLATION protein_coding stop - 3 56.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000051586 Mical3 ENSMUST00000140854 - NO_TRANSLATION retained_intron ENSMUSG00000051586 Mical3 ENSMUST00000204248 ENSMUSP00000145439 TRANSLATION protein_coding stop - 5 695.0 35.0 12.28 0.0 74.4 0.0 -4,-5 0.0031 18 -2.0 MINOR ENSMUSG00000051586 Mical3 ENSMUST00000212333 ENSMUSP00000148611 TRANSLATION protein_coding start - 5 1139.0 0.0 3.85 0.0 161.7 0.0 -4,-5 0.0137 26 -2.0 MINOR ENSMUSG00000051586 Mical3 ENSMUST00000150503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051586 Mical3 ENSMUST00000203095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051586 Mical3 ENSMUST00000151602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051586 Mical3 ENSMUST00000203188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051586 Mical3 ENSMUST00000205020 - NO_TRANSLATION retained_intron ENSMUSG00000051586 Mical3 ENSMUST00000238920 ENSMUSP00000159047 TRANSLATION protein_coding - - - 2014.0 43.0 17.53 0.0 271.9 0.0 -4,-5 0.5266 50 14.0 ALTERNATIVE:2 ENSMUSG00000051586 Mical3 ENSMUST00000203254 ENSMUSP00000145254 TRANSLATION nonsense_mediated_decay - - 1 661.0 35.0 12.28 0.0 74.4 0.0 -4,-5 0.0031 16 -2.0 MINOR ENSMUSG00000051586 Mical3 ENSMUST00000238968 ENSMUSP00000159123 TRANSLATION protein_coding - - - 2044.0 43.0 17.53 0.0 271.9 0.0 -4,-5 1.0 51 14.0 PRINCIPAL:2 ENSMUSG00000051586 Mical3 ENSMUST00000204302 ENSMUSP00000144972 TRANSLATION protein_coding start - 1 268.0 8.0 0.9 0.0 37.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000051586 Mical3 ENSMUST00000205030 ENSMUSP00000144882 TRANSLATION protein_coding start - 3 216.0 6.0 0.6 0.0 29.2 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000051586 Mical3 ENSMUST00000142924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051586 Mical3 ENSMUST00000204644 - NO_TRANSLATION retained_intron ENSMUSG00000051586 Mical3 ENSMUST00000098457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051586 Mical3 ENSMUST00000077159 ENSMUSP00000076402 TRANSLATION protein_coding - CCDS20487.1 1 864.0 41.0 12.88 0.0 103.6 0.0 -4,-5 0.04 23 5.334 MINOR ENSMUSG00000051586 Mical3 ENSMUST00000212208 ENSMUSP00000148750 TRANSLATION protein_coding start - 5 451.0 6.0 1.6 0.0 29.2 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000051586 Mical3 ENSMUST00000238957 ENSMUSP00000158944 TRANSLATION protein_coding - - - 1968.0 43.0 17.53 0.0 271.9 0.0 -4,-5 0.4645 49 14.0 ALTERNATIVE:2 ENSMUSG00000051586 Mical3 ENSMUST00000204994 - NO_TRANSLATION retained_intron ENSMUSG00000051586 Mical3 ENSMUST00000207889 ENSMUSP00000146544 TRANSLATION protein_coding - CCDS85152.1 5 1993.0 43.0 17.53 0.1 271.9 0.0 -4,-5 0.6872 50 14.0 ALTERNATIVE:2 ENSMUSG00000051586 Mical3 ENSMUST00000207968 ENSMUSP00000147139 TRANSLATION protein_coding stop - 2 65.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000078280 Tas2r122 ENSMUST00000105077 ENSMUSP00000100699 TRANSLATION protein_coding - CCDS39675.1 - 309.0 0.0 0.0 0.0 240.2 0.0 -1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096887 Gm20594 ENSMUST00000179797 ENSMUSP00000136098 TRANSLATION protein_coding - CCDS57431.1 - 37.0 0.0 0.0 0.0 56.8 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000029687 Ezh2 ENSMUST00000169889 ENSMUSP00000126481 TRANSLATION nonsense_mediated_decay start - 3 156.0 0.0 3.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029687 Ezh2 ENSMUST00000114618 ENSMUSP00000110265 TRANSLATION protein_coding - CCDS51760.1 1 742.0 24.0 17.23 15.3 124.3 0.0 -4,-5 0.9539 10 20.244 MINOR ENSMUSG00000029687 Ezh2 ENSMUST00000164006 ENSMUSP00000133195 TRANSLATION nonsense_mediated_decay start - 5 123.0 0.0 1.73 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029687 Ezh2 ENSMUST00000170311 - NO_TRANSLATION retained_intron ENSMUSG00000029687 Ezh2 ENSMUST00000092648 ENSMUSP00000090318 TRANSLATION protein_coding - - 5 704.0 24.0 16.56 10.8 124.3 0.0 -4,-5 0.6449 6 17.99 MINOR ENSMUSG00000029687 Ezh2 ENSMUST00000170327 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029687 Ezh2 ENSMUST00000171614 - NO_TRANSLATION retained_intron ENSMUSG00000029687 Ezh2 ENSMUST00000167278 ENSMUSP00000128542 TRANSLATION nonsense_mediated_decay start - 3 52.0 0.0 1.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029687 Ezh2 ENSMUST00000114616 ENSMUSP00000110263 TRANSLATION protein_coding - - 5 707.0 24.0 16.56 2.0 124.3 0.0 -4,-5 0.1591 9 16.206 MINOR ENSMUSG00000029687 Ezh2 ENSMUST00000133043 ENSMUSP00000118663 TRANSLATION protein_coding stop - 1 233.0 0.0 4.83 0.0 58.5 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000029687 Ezh2 ENSMUST00000204798 ENSMUSP00000144780 TRANSLATION nonsense_mediated_decay - - 5 93.0 0.0 2.429 0.0 58.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029687 Ezh2 ENSMUST00000203857 - NO_TRANSLATION retained_intron ENSMUSG00000029687 Ezh2 ENSMUST00000204243 ENSMUSP00000144781 TRANSLATION protein_coding start - 3 127.0 13.0 3.75 0.0 22.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029687 Ezh2 ENSMUST00000165492 - NO_TRANSLATION retained_intron ENSMUSG00000029687 Ezh2 ENSMUST00000081721 ENSMUSP00000080419 TRANSLATION protein_coding - CCDS20096.1 1 746.0 24.0 17.56 20.7 124.3 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000029701 Rbm28 ENSMUST00000169214 - NO_TRANSLATION retained_intron ENSMUSG00000029701 Rbm28 ENSMUST00000164563 ENSMUSP00000127856 TRANSLATION protein_coding start - 5 133.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029701 Rbm28 ENSMUST00000172346 - NO_TRANSLATION retained_intron ENSMUSG00000029701 Rbm28 ENSMUST00000007993 ENSMUSP00000007993 TRANSLATION protein_coding - CCDS51733.1 1 750.0 0.0 7.275 2.3 179.4 0.0 -3,-6 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000029701 Rbm28 ENSMUST00000170750 - NO_TRANSLATION retained_intron ENSMUSG00000029701 Rbm28 ENSMUST00000170473 - NO_TRANSLATION retained_intron ENSMUSG00000009112 Bcl2l13 ENSMUST00000204004 - NO_TRANSLATION retained_intron ENSMUSG00000009112 Bcl2l13 ENSMUST00000203037 ENSMUSP00000145390 TRANSLATION protein_coding stop - 5 75.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0751 1 -2.0 MINOR ENSMUSG00000009112 Bcl2l13 ENSMUST00000009256 ENSMUSP00000009256 TRANSLATION protein_coding - CCDS20485.1 1 434.0 0.0 0.0 0.3 42.9 0.0 -4,-5 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000009112 Bcl2l13 ENSMUST00000203584 ENSMUSP00000145341 TRANSLATION protein_coding stop - 2 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030220 Arhgdib ENSMUST00000111891 ENSMUSP00000107522 TRANSLATION protein_coding - CCDS20661.1 2 200.0 0.0 5.33 32.9 253.7 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000030220 Arhgdib ENSMUST00000032344 ENSMUSP00000032344 TRANSLATION protein_coding - CCDS20661.1 1 200.0 0.0 5.33 32.9 253.7 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000030220 Arhgdib ENSMUST00000204934 ENSMUSP00000145103 TRANSLATION protein_coding stop - 3 89.0 0.0 2.5 0.0 132.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030220 Arhgdib ENSMUST00000154440 ENSMUSP00000120047 TRANSLATION protein_coding stop - 3 50.0 0.0 1.0 0.0 36.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030220 Arhgdib ENSMUST00000111892 ENSMUSP00000107523 TRANSLATION protein_coding - CCDS20661.1 1 200.0 0.0 5.33 32.9 253.7 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000030306 Tmtc1 ENSMUST00000203991 ENSMUSP00000144991 TRANSLATION protein_coding stop - 3 208.0 0.0 2.748 0.0 0.0 2.0 -3,-5 0.0006 - -2.0 MINOR ENSMUSG00000030306 Tmtc1 ENSMUST00000060095 ENSMUSP00000056353 TRANSLATION protein_coding - CCDS51960.1 1 942.0 0.0 16.85 5.8 271.0 8.0 -2,0 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000030306 Tmtc1 ENSMUST00000140797 ENSMUSP00000115543 TRANSLATION nonsense_mediated_decay - - 5 570.0 0.0 9.128 0.0 144.4 7.0 -3,-5 0.0036 1 -2.0 MINOR ENSMUSG00000030306 Tmtc1 ENSMUST00000100772 ENSMUSP00000098335 TRANSLATION protein_coding - CCDS85189.1 2 904.0 0.0 15.85 0.1 245.2 8.0 -2,0 0.2032 5 8.454 MINOR ENSMUSG00000051169 Rpusd3 ENSMUST00000147726 ENSMUSP00000120250 TRANSLATION protein_coding start/stop - 3 269.0 0.0 6.38 0.0 66.6 0.0 -4,-1 0.0094 1 -2.0 MINOR ENSMUSG00000051169 Rpusd3 ENSMUST00000113092 ENSMUSP00000108715 TRANSLATION protein_coding - CCDS51872.1 1 344.0 0.0 7.38 3.6 66.6 0.0 -4,0 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000051169 Rpusd3 ENSMUST00000060634 ENSMUSP00000059057 TRANSLATION protein_coding - CCDS85119.1 1 279.0 0.0 5.38 0.0 54.0 0.0 -4,0 0.0237 1 6.864 MINOR ENSMUSG00000051169 Rpusd3 ENSMUST00000150452 - NO_TRANSLATION retained_intron ENSMUSG00000051169 Rpusd3 ENSMUST00000129560 ENSMUSP00000114511 TRANSLATION protein_coding stop - 5 117.0 0.0 0.8 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000051169 Rpusd3 ENSMUST00000124078 - NO_TRANSLATION retained_intron ENSMUSG00000051169 Rpusd3 ENSMUST00000134853 - NO_TRANSLATION retained_intron ENSMUSG00000051169 Rpusd3 ENSMUST00000151618 ENSMUSP00000115950 TRANSLATION protein_coding start/stop - 3 183.0 0.0 3.88 0.0 29.4 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000051169 Rpusd3 ENSMUST00000203758 - NO_TRANSLATION retained_intron ENSMUSG00000051169 Rpusd3 ENSMUST00000129047 ENSMUSP00000120380 TRANSLATION protein_coding - - 1 315.0 0.0 6.38 0.0 66.6 0.0 -4,0 0.0209 1 10.002 MINOR ENSMUSG00000094117 Igkv3-12 ENSMUST00000103396 ENSMUSP00000100197 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.1 74.2 0.0 4,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000033788 Dysf ENSMUST00000081904 ENSMUSP00000080579 TRANSLATION protein_coding - CCDS39536.1 1 2100.0 31.0 9.32 4.9 629.7 1.0 -4,-2 1.0 47 15.322 PRINCIPAL:4 ENSMUSG00000033788 Dysf ENSMUST00000113823 ENSMUSP00000109454 TRANSLATION protein_coding - CCDS39535.1 5 2099.0 29.0 9.32 5.8 627.8 1.0 -4,-6 0.9491 45 14.296 MINOR ENSMUSG00000033788 Dysf ENSMUST00000204354 ENSMUSP00000144705 TRANSLATION protein_coding - - 5 2090.0 31.0 9.32 4.9 629.7 1.0 -4,-2 0.8241 47 15.322 ALTERNATIVE:1 ENSMUSG00000033788 Dysf ENSMUST00000204987 ENSMUSP00000144748 TRANSLATION protein_coding - - 5 2104.0 31.0 9.32 6.0 629.9 1.0 -4,-2 0.9018 47 15.694 ALTERNATIVE:1 ENSMUSG00000033788 Dysf ENSMUST00000128965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033788 Dysf ENSMUST00000142711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033788 Dysf ENSMUST00000203803 ENSMUSP00000145511 TRANSLATION protein_coding - - 5 2103.0 29.0 9.32 0.0 628.0 1.0 -4,-6 0.2951 44 12.668 MINOR ENSMUSG00000033788 Dysf ENSMUST00000127459 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033788 Dysf ENSMUST00000089595 ENSMUSP00000087022 TRANSLATION protein_coding - - 5 2083.0 31.0 9.32 4.9 629.9 1.0 -4,-2 0.8354 47 15.322 ALTERNATIVE:1 ENSMUSG00000033788 Dysf ENSMUST00000203695 ENSMUSP00000145292 TRANSLATION protein_coding - - 5 2114.0 31.0 9.32 6.0 629.9 1.0 -4,-2 0.9773 47 15.694 ALTERNATIVE:1 ENSMUSG00000033788 Dysf ENSMUST00000168387 ENSMUSP00000132297 TRANSLATION protein_coding - - 5 2090.0 29.0 9.32 4.8 628.0 1.0 -4,-6 0.7135 45 13.956 MINOR ENSMUSG00000033788 Dysf ENSMUST00000204591 ENSMUSP00000144970 TRANSLATION protein_coding - - 5 2120.0 29.0 9.32 5.8 627.8 1.0 -4,-6 0.8597 45 14.296 MINOR ENSMUSG00000033788 Dysf ENSMUST00000152646 - NO_TRANSLATION retained_intron ENSMUSG00000033788 Dysf ENSMUST00000153860 ENSMUSP00000145518 TRANSLATION protein_coding - - 5 2103.0 29.0 9.32 6.9 628.0 1.0 -4,-6 0.8285 45 14.668 MINOR ENSMUSG00000033788 Dysf ENSMUST00000113821 ENSMUSP00000109452 TRANSLATION protein_coding - - 5 2082.0 29.0 9.32 5.8 628.0 1.0 -4,-6 0.7963 45 14.296 MINOR ENSMUSG00000033788 Dysf ENSMUST00000113818 ENSMUSP00000109449 TRANSLATION protein_coding - CCDS85081.1 1 2069.0 31.0 9.32 4.9 629.7 1.0 -4,-2 0.9836 47 15.322 ALTERNATIVE:1 ENSMUSG00000009394 Syn2 ENSMUST00000204617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009394 Syn2 ENSMUST00000009538 ENSMUSP00000009538 TRANSLATION protein_coding - CCDS51874.1 1 586.0 22.0 8.0 2.2 679.1 0.0 -4,-2 1.0 18 15.0 PRINCIPAL:2 ENSMUSG00000009394 Syn2 ENSMUST00000203707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009394 Syn2 ENSMUST00000169345 ENSMUSP00000133121 TRANSLATION protein_coding - CCDS51875.1 1 479.0 22.0 8.0 1.1 679.1 0.0 -4,-2 0.497 16 14.083 ALTERNATIVE:2 ENSMUSG00000009394 Syn2 ENSMUST00000204726 - NO_TRANSLATION retained_intron ENSMUSG00000009394 Syn2 ENSMUST00000203768 - NO_TRANSLATION retained_intron ENSMUSG00000009394 Syn2 ENSMUST00000203450 ENSMUSP00000144921 TRANSLATION protein_coding - CCDS51875.1 1 479.0 22.0 8.0 1.1 679.1 0.0 -4,-2 0.497 16 14.083 ALTERNATIVE:2 ENSMUSG00000056643 Chst13 ENSMUST00000070890 ENSMUSP00000064897 TRANSLATION protein_coding - CCDS51847.1 3 336.0 0.0 1.45 2.3 183.0 0.0 -3,-6 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000048489 Depp1 ENSMUST00000204555 ENSMUSP00000145125 TRANSLATION protein_coding stop - 5 70.0 0.0 0.0 0.0 79.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048489 Depp1 ENSMUST00000178241 ENSMUSP00000136165 TRANSLATION protein_coding - CCDS51882.1 1 205.0 0.0 0.0 2.8 255.6 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000048489 Depp1 ENSMUST00000067354 ENSMUSP00000070203 TRANSLATION protein_coding - CCDS51882.1 1 205.0 0.0 0.0 2.8 255.6 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000037997 Parp11 ENSMUST00000201717 - NO_TRANSLATION retained_intron ENSMUSG00000037997 Parp11 ENSMUST00000112195 ENSMUSP00000107814 TRANSLATION protein_coding - - 3 176.0 0.0 3.79 0.0 58.0 0.0 -4,-5 0.0 - 3.36 MINOR ENSMUSG00000037997 Parp11 ENSMUST00000112193 ENSMUSP00000107812 TRANSLATION protein_coding - - 1 176.0 0.0 3.79 0.0 58.0 0.0 -4,-5 0.0 - 3.36 MINOR ENSMUSG00000037997 Parp11 ENSMUST00000128470 - NO_TRANSLATION retained_intron ENSMUSG00000037997 Parp11 ENSMUST00000112191 ENSMUSP00000107810 TRANSLATION protein_coding - CCDS85162.1 1 248.0 0.0 3.11 5.7 157.9 0.0 -4,-2 0.3284 - 6.423 MINOR ENSMUSG00000037997 Parp11 ENSMUST00000125364 - NO_TRANSLATION retained_intron ENSMUSG00000037997 Parp11 ENSMUST00000134018 - NO_TRANSLATION retained_intron ENSMUSG00000037997 Parp11 ENSMUST00000144115 ENSMUSP00000144598 TRANSLATION nonsense_mediated_decay - - 2 43.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037997 Parp11 ENSMUST00000136945 - NO_TRANSLATION retained_intron ENSMUSG00000037997 Parp11 ENSMUST00000039680 ENSMUSP00000036127 TRANSLATION protein_coding - CCDS20565.1 1 331.0 0.0 5.11 8.4 215.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000055172 C1ra ENSMUST00000068593 ENSMUSP00000063707 TRANSLATION protein_coding - CCDS20521.1 1 707.0 21.0 9.3 8.1 444.6 0.0 4,-1 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000062995 Ica1 ENSMUST00000126430 ENSMUSP00000116861 TRANSLATION protein_coding start - 3 141.0 0.0 3.08 0.0 110.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000062995 Ica1 ENSMUST00000115518 ENSMUSP00000111180 TRANSLATION protein_coding - - 1 310.0 1.0 7.58 0.0 307.4 0.0 -4,-5 0.0291 5 6.0 MINOR ENSMUSG00000062995 Ica1 ENSMUST00000038403 ENSMUSP00000040062 TRANSLATION protein_coding - CCDS19911.1 1 478.0 1.0 7.58 9.8 511.5 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000062995 Ica1 ENSMUST00000135113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062995 Ica1 ENSMUST00000115520 ENSMUSP00000111182 TRANSLATION protein_coding - CCDS19911.1 5 478.0 1.0 7.58 9.8 511.5 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000062995 Ica1 ENSMUST00000115519 ENSMUSP00000111181 TRANSLATION protein_coding - - 5 465.0 1.0 7.58 0.0 496.4 0.0 -4,-5 0.0669 9 11.094 MINOR ENSMUSG00000062995 Ica1 ENSMUST00000153390 ENSMUSP00000117734 TRANSLATION protein_coding stop - 5 277.0 1.0 7.58 0.0 307.4 0.0 -4,-5 0.0265 5 -2.0 MINOR ENSMUSG00000062995 Ica1 ENSMUST00000127398 ENSMUSP00000118194 TRANSLATION protein_coding start - 3 66.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000062995 Ica1 ENSMUST00000156695 ENSMUSP00000138459 TRANSLATION nonsense_mediated_decay - - 5 302.0 1.0 7.58 0.0 335.5 0.0 -4,-5 0.0289 6 -2.0 MINOR ENSMUSG00000062995 Ica1 ENSMUST00000126039 ENSMUSP00000118010 TRANSLATION protein_coding stop - 3 73.0 1.0 2.0 0.0 62.7 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000062995 Ica1 ENSMUST00000151758 ENSMUSP00000117112 TRANSLATION protein_coding stop - 3 45.0 1.0 1.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000062995 Ica1 ENSMUST00000145870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072623 Zfp9 ENSMUST00000161170 ENSMUSP00000123810 TRANSLATION protein_coding - CCDS51885.1 1 454.0 48.0 1.282 1.1 356.9 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000072623 Zfp9 ENSMUST00000204066 - NO_TRANSLATION retained_intron ENSMUSG00000029553 Tfec ENSMUST00000201104 - NO_TRANSLATION retained_intron ENSMUSG00000029553 Tfec ENSMUST00000031533 ENSMUSP00000031533 TRANSLATION protein_coding - CCDS19920.1 1 317.0 0.0 2.83 4.0 148.5 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000029553 Tfec ENSMUST00000202997 ENSMUSP00000143880 TRANSLATION nonsense_mediated_decay - - 1 127.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000029553 Tfec ENSMUST00000201406 ENSMUSP00000144445 TRANSLATION protein_coding start - - 28.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029553 Tfec ENSMUST00000200984 - NO_TRANSLATION retained_intron ENSMUSG00000048473 Sult6b2 ENSMUST00000156662 ENSMUSP00000138527 TRANSLATION nonsense_mediated_decay - - 2 171.0 8.0 3.3 0.0 68.5 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000048473 Sult6b2 ENSMUST00000111768 ENSMUSP00000107398 TRANSLATION protein_coding - CCDS51950.1 1 290.0 19.0 6.0 0.0 209.5 0.0 -4,-6 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000033027 Klrc3 ENSMUST00000203189 ENSMUSP00000144993 TRANSLATION nonsense_mediated_decay - - 1 90.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0036 - -2.0 MINOR ENSMUSG00000033027 Klrc3 ENSMUST00000170148 ENSMUSP00000129830 TRANSLATION protein_coding - - 1 213.0 3.0 2.1 0.0 48.0 2.0 -4,-5 0.039 - 10.484 ALTERNATIVE:2 ENSMUSG00000033027 Klrc3 ENSMUST00000071149 ENSMUSP00000071147 TRANSLATION protein_coding - CCDS20591.1 1 221.0 3.0 2.298 0.1 48.0 2.0 -4,-5 1.0 - 11.0 PRINCIPAL:2 ENSMUSG00000034203 Chchd4 ENSMUST00000040835 ENSMUSP00000041380 TRANSLATION protein_coding - CCDS20367.1 1 139.0 0.0 1.4 12.4 36.2 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000034203 Chchd4 ENSMUST00000205802 - NO_TRANSLATION retained_intron ENSMUSG00000115236 Vmn1r11 ENSMUST00000226968 ENSMUSP00000154588 TRANSLATION protein_coding - CCDS20175.1 - 299.0 0.0 0.0 0.4 193.7 4.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115236 Vmn1r11 ENSMUST00000071304 ENSMUSP00000071272 TRANSLATION protein_coding - CCDS20175.1 - 299.0 0.0 0.0 0.4 193.7 4.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115236 Vmn1r11 ENSMUST00000228235 ENSMUSP00000154621 TRANSLATION protein_coding - - - 262.0 0.0 0.0 0.0 184.6 3.0 -4,-5 0.0288 - 0.0 MINOR ENSMUSG00000104769 Igkv8-34 ENSMUST00000196959 ENSMUSP00000142499 TRANSLATION IG_V_gene stop - - 121.0 0.0 1.0 0.0 59.1 0.0 4,-1 0.8251 1 -2.0 PRINCIPAL:1 ENSMUSG00000056737 Capg ENSMUST00000156168 - NO_TRANSLATION retained_intron ENSMUSG00000056737 Capg ENSMUST00000134809 ENSMUSP00000118022 TRANSLATION protein_coding stop - 2 90.0 3.0 1.75 0.0 45.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000056737 Capg ENSMUST00000155705 ENSMUSP00000117440 TRANSLATION protein_coding stop - 3 104.0 3.0 2.25 0.0 63.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000056737 Capg ENSMUST00000155188 ENSMUSP00000120363 TRANSLATION protein_coding stop - 5 173.0 6.0 3.55 0.0 66.8 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000056737 Capg ENSMUST00000126124 ENSMUSP00000121221 TRANSLATION protein_coding stop - 3 193.0 7.0 4.3 0.0 114.4 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000056737 Capg ENSMUST00000114072 ENSMUSP00000109706 TRANSLATION protein_coding - CCDS39516.1 1 349.0 10.0 8.8 28.7 191.1 0.0 -4,-6 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000056737 Capg ENSMUST00000137435 - NO_TRANSLATION retained_intron ENSMUSG00000056737 Capg ENSMUST00000071044 ENSMUSP00000063389 TRANSLATION protein_coding - CCDS39516.1 1 349.0 10.0 8.8 28.7 191.1 0.0 -4,-6 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000056737 Capg ENSMUST00000114071 ENSMUSP00000109705 TRANSLATION protein_coding - CCDS39516.1 1 349.0 10.0 8.8 28.7 191.1 0.0 -4,-6 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000056737 Capg ENSMUST00000127770 - NO_TRANSLATION retained_intron ENSMUSG00000056737 Capg ENSMUST00000126101 ENSMUSP00000121121 TRANSLATION protein_coding stop - 5 254.0 7.0 6.3 0.0 136.9 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000076583 Igkv8-24 ENSMUST00000103384 ENSMUSP00000100185 TRANSLATION IG_V_gene stop - - 121.0 0.0 1.0 0.0 63.0 0.0 4,-1 0.8251 2 -2.0 PRINCIPAL:1 ENSMUSG00000107872 Gm44511 ENSMUST00000204756 ENSMUSP00000144777 TRANSLATION protein_coding,RT start/stop - 1 188.0 0.0 3.855 0.0 56.3 2.0 -4,-7 0.0036 - -2.0 ALTERNATIVE:2 ENSMUSG00000107872 Gm44511 ENSMUST00000204677 ENSMUSP00000145287 TRANSLATION protein_coding,RT stop - 5 143.0 0.0 1.775 0.0 0.0 2.0 -4,-6 0.0033 - -2.0 ALTERNATIVE:2 ENSMUSG00000107872 Gm44511 ENSMUST00000204423 ENSMUSP00000145327 TRANSLATION protein_coding,RT - - 1 223.0 0.0 4.275 0.1 72.2 2.0 -4,-6 0.6531 - -2.0 ALTERNATIVE:2 ENSMUSG00000107872 Gm44511 ENSMUST00000204394 ENSMUSP00000145481 TRANSLATION protein_coding,RT - - 1 223.0 0.0 4.605 0.1 70.8 2.0 -4,-6 0.565 - -2.0 PRINCIPAL:5 ENSMUSG00000076532 Igkv4-91 ENSMUST00000103333 ENSMUSP00000100134 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.0 57.9 0.0 1,-4 0.8157 - -2.0 PRINCIPAL:1 ENSMUSG00000051153 Tas2r105 ENSMUST00000053652 ENSMUSP00000058006 TRANSLATION protein_coding - CCDS20612.1 - 300.0 0.0 0.0 0.1 356.7 0.0 -1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094094 Igkv5-45 ENSMUST00000103366 ENSMUSP00000100167 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 56.9 0.0 3,-1 0.8251 1 -2.0 PRINCIPAL:1 ENSMUSG00000030142 Clec4e ENSMUST00000175995 - NO_TRANSLATION retained_intron ENSMUSG00000030142 Clec4e ENSMUST00000176096 ENSMUSP00000135682 TRANSLATION nonsense_mediated_decay - - 5 52.0 0.0 1.1 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030142 Clec4e ENSMUST00000176831 - NO_TRANSLATION retained_intron ENSMUSG00000030142 Clec4e ENSMUST00000177367 ENSMUSP00000135081 TRANSLATION protein_coding - - 3 185.0 14.0 4.43 0.1 83.5 1.0 -4,-7 0.0545 - 17.4 MINOR ENSMUSG00000030142 Clec4e ENSMUST00000176443 - NO_TRANSLATION retained_intron ENSMUSG00000030142 Clec4e ENSMUST00000175954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030142 Clec4e ENSMUST00000032239 ENSMUSP00000032239 TRANSLATION protein_coding - CCDS20514.1 1 214.0 14.0 4.73 2.5 83.5 1.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000068011 Mkrn2os ENSMUST00000088962 ENSMUSP00000086356 TRANSLATION nonsense_mediated_decay - - 1 76.0 3.0 1.0 0.0 74.6 0.0 -4,-6 0.0006 1 -2.0 MINOR ENSMUSG00000068011 Mkrn2os ENSMUST00000112957 ENSMUSP00000108580 TRANSLATION protein_coding - CCDS51877.1 2 217.0 3.0 3.5 1.7 235.4 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000014704 Hoxa2 ENSMUST00000014848 ENSMUSP00000014848 TRANSLATION protein_coding - CCDS20139.1 1 372.0 0.0 0.5 11.9 76.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030303 Far2 ENSMUST00000111607 ENSMUSP00000107234 TRANSLATION protein_coding - CCDS39718.1 1 502.0 29.0 10.316 0.0 363.9 0.0 -4,-6 0.1223 3 17.13 MINOR ENSMUSG00000030303 Far2 ENSMUST00000203278 - NO_TRANSLATION retained_intron ENSMUSG00000030303 Far2 ENSMUST00000032443 ENSMUSP00000032443 TRANSLATION protein_coding - CCDS85188.1 1 515.0 29.0 10.75 28.7 363.9 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000079516 Reg3a ENSMUST00000101272 ENSMUSP00000098829 TRANSLATION protein_coding - CCDS20255.1 1 175.0 3.0 3.9 10.3 75.2 0.0 4,-1 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000056429 Tgoln1 ENSMUST00000070524 ENSMUSP00000068487 TRANSLATION protein_coding - CCDS51811.1 1 353.0 0.0 0.0 0.0 0.0 0.0 4,-2 0.9729 12 0.0 PRINCIPAL:1 ENSMUSG00000030124 Lag3 ENSMUST00000032217 ENSMUSP00000032217 TRANSLATION protein_coding - CCDS20536.1 1 521.0 0.0 0.66 0.3 23.8 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000030124 Lag3 ENSMUST00000139571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052955 Cpvl ENSMUST00000204674 ENSMUSP00000144942 TRANSLATION protein_coding - CCDS51777.1 1 478.0 7.0 10.6 3.5 348.1 0.0 3,-2 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000052955 Cpvl ENSMUST00000203101 ENSMUSP00000145288 TRANSLATION protein_coding - CCDS85050.1 1 434.0 7.0 9.6 0.0 319.9 0.0 3,-2 0.0358 2 14.31 MINOR ENSMUSG00000052955 Cpvl ENSMUST00000166545 ENSMUSP00000131462 TRANSLATION protein_coding - CCDS51777.1 1 478.0 7.0 10.6 3.5 348.1 0.0 3,-2 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000071150 Tas2r121 ENSMUST00000095395 ENSMUSP00000093044 TRANSLATION protein_coding - CCDS20618.1 - 305.0 0.0 0.0 1.1 354.5 0.0 -3,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000029778 Adcyap1r1 ENSMUST00000172084 ENSMUSP00000127319 TRANSLATION protein_coding - - 5 447.0 0.0 10.2 3.4 419.2 12.0 4,-1 0.4283 4 7.682 MINOR ENSMUSG00000029778 Adcyap1r1 ENSMUST00000165786 ENSMUSP00000130923 TRANSLATION protein_coding - - 5 495.0 0.0 9.815 8.1 407.2 12.0 4,-1 0.7211 4 6.9 MINOR ENSMUSG00000029778 Adcyap1r1 ENSMUST00000167484 ENSMUSP00000131641 TRANSLATION protein_coding stop - 2 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0222 - -2.0 MINOR ENSMUSG00000029778 Adcyap1r1 ENSMUST00000166962 ENSMUSP00000130742 TRANSLATION protein_coding stop - 5 146.0 0.0 2.365 0.0 58.8 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000029778 Adcyap1r1 ENSMUST00000167234 ENSMUSP00000126994 TRANSLATION protein_coding - - 5 524.0 0.0 10.865 3.2 408.2 12.0 4,-1 0.2876 4 6.93 MINOR ENSMUSG00000029778 Adcyap1r1 ENSMUST00000070736 ENSMUSP00000063784 TRANSLATION protein_coding - CCDS20167.1 1 496.0 0.0 10.565 8.1 407.2 12.0 4,-1 0.8946 4 8.4 ALTERNATIVE:1 ENSMUSG00000029778 Adcyap1r1 ENSMUST00000070756 ENSMUSP00000066902 TRANSLATION protein_coding - CCDS20166.1 1 468.0 0.0 10.565 8.1 416.4 12.0 4,-1 1.0 4 9.4 PRINCIPAL:4 ENSMUSG00000029778 Adcyap1r1 ENSMUST00000165857 ENSMUSP00000129614 TRANSLATION protein_coding - - 5 496.0 0.0 10.865 3.5 415.1 12.0 4,-1 0.4076 3 7.056 MINOR ENSMUSG00000058499 Pip ENSMUST00000203244 ENSMUSP00000144995 TRANSLATION protein_coding - - 3 107.0 0.0 2.0 0.0 143.3 0.0 3,-2 0.001 2 7.95 MINOR ENSMUSG00000058499 Pip ENSMUST00000204575 ENSMUSP00000144926 TRANSLATION protein_coding start - 1 69.0 0.0 1.0 0.0 76.6 0.0 3,-2 0.0021 - -2.0 MINOR ENSMUSG00000058499 Pip ENSMUST00000075351 ENSMUSP00000074818 TRANSLATION protein_coding - CCDS39469.1 1 146.0 0.0 3.0 0.4 177.5 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000051917 Tas2r144 ENSMUST00000063489 ENSMUSP00000067734 TRANSLATION protein_coding - CCDS20062.1 - 319.0 0.0 0.0 4.7 205.6 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000042279 H1f8 ENSMUST00000205177 ENSMUSP00000144958 TRANSLATION protein_coding start - 3 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042279 H1f8 ENSMUST00000037831 ENSMUSP00000036951 TRANSLATION protein_coding - CCDS20447.1 1 304.0 0.0 1.0 0.0 77.8 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000042279 H1f8 ENSMUST00000161969 ENSMUSP00000123797 TRANSLATION protein_coding - CCDS85133.1 1 246.0 0.0 1.0 0.0 77.8 0.0 -4,-7 0.3198 - 8.0 ALTERNATIVE:2 ENSMUSG00000042279 H1f8 ENSMUST00000162084 ENSMUSP00000124090 TRANSLATION nonsense_mediated_decay - - 1 46.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000042279 H1f8 ENSMUST00000161617 ENSMUSP00000125701 TRANSLATION protein_coding stop - 3 251.0 0.0 1.0 0.0 77.8 0.0 -4,-7 0.0637 - -2.0 MINOR ENSMUSG00000061414 Cracr2a ENSMUST00000201303 - NO_TRANSLATION retained_intron ENSMUSG00000061414 Cracr2a ENSMUST00000071563 ENSMUSP00000071494 TRANSLATION protein_coding - CCDS20566.1 1 310.0 5.0 4.4 0.0 37.1 0.0 -4,-5 0.0027 3 0.0 MINOR ENSMUSG00000061414 Cracr2a ENSMUST00000212051 ENSMUSP00000148569 TRANSLATION protein_coding - - 5 726.0 24.0 8.65 7.3 196.6 0.0 -4,-5 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000029765 Plxna4 ENSMUST00000115096 ENSMUSP00000110748 TRANSLATION protein_coding - CCDS19985.2 1 1893.0 0.0 26.56 17.0 1299.3 0.0 2,-2 1.0 32 16.0 PRINCIPAL:1 ENSMUSG00000029765 Plxna4 ENSMUST00000200732 - NO_TRANSLATION retained_intron ENSMUSG00000036463 4930544G11Rik ENSMUST00000043382 ENSMUSP00000045487 TRANSLATION protein_coding - CCDS51801.1 - 193.0 25.0 1.0 36.9 189.8 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000039032 Tsga13 ENSMUST00000201230 - NO_TRANSLATION retained_intron ENSMUSG00000039032 Tsga13 ENSMUST00000048580 ENSMUSP00000040894 TRANSLATION protein_coding - CCDS19980.1 1 273.0 0.0 0.8 4.2 403.5 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000039032 Tsga13 ENSMUST00000202703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030222 Rerg ENSMUST00000117919 ENSMUSP00000113105 TRANSLATION protein_coding - CCDS20663.1 1 199.0 24.0 4.08 34.2 145.2 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000030222 Rerg ENSMUST00000032347 ENSMUSP00000032347 TRANSLATION protein_coding - CCDS20663.1 1 199.0 24.0 4.08 34.2 145.2 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000030222 Rerg ENSMUST00000203003 ENSMUSP00000144823 TRANSLATION protein_coding stop - 3 59.0 4.0 1.33 0.0 36.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030222 Rerg ENSMUST00000149100 ENSMUSP00000144902 TRANSLATION protein_coding - - 1 48.0 3.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000030222 Rerg ENSMUST00000119610 ENSMUSP00000113702 TRANSLATION protein_coding - CCDS51942.1 3 180.0 19.0 3.58 10.6 108.0 0.0 -4,-6 0.2225 2 12.586 MINOR ENSMUSG00000034777 Vax2 ENSMUST00000037807 ENSMUSP00000035976 TRANSLATION protein_coding - CCDS20282.1 1 292.0 0.0 1.6 6.7 77.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030232 Aebp2 ENSMUST00000032359 ENSMUSP00000032359 TRANSLATION protein_coding - CCDS20674.1 1 274.0 12.0 5.28 2.0 0.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:2 ENSMUSG00000030232 Aebp2 ENSMUST00000249353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030232 Aebp2 ENSMUST00000160772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030232 Aebp2 ENSMUST00000160836 ENSMUSP00000124148 TRANSLATION protein_coding - CCDS80631.1 1 288.0 12.0 5.28 1.1 0.0 0.0 -4,-5 0.3728 3 12.1 ALTERNATIVE:2 ENSMUSG00000030232 Aebp2 ENSMUST00000249350 ENSMUSP00000159712 TRANSLATION nonsense_mediated_decay - CCDS39689.2 - 504.0 12.0 5.28 0.0 0.0 0.0 -4,-5 0.1439 3 -2.0 MINOR ENSMUSG00000030232 Aebp2 ENSMUST00000249348 ENSMUSP00000159710 TRANSLATION protein_coding - CCDS80631.1 - 288.0 12.0 5.28 1.1 0.0 0.0 -4,-5 0.3728 3 12.1 ALTERNATIVE:2 ENSMUSG00000030232 Aebp2 ENSMUST00000249351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030232 Aebp2 ENSMUST00000161335 ENSMUSP00000125479 TRANSLATION protein_coding - CCDS80631.1 1 288.0 12.0 5.28 1.1 0.0 0.0 -4,-5 0.3728 3 12.1 ALTERNATIVE:2 ENSMUSG00000030232 Aebp2 ENSMUST00000162100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030232 Aebp2 ENSMUST00000204724 - NO_TRANSLATION retained_intron ENSMUSG00000030232 Aebp2 ENSMUST00000249352 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030232 Aebp2 ENSMUST00000087614 ENSMUSP00000084896 TRANSLATION protein_coding - CCDS20673.1 1 496.0 12.0 5.28 0.1 0.0 0.0 -4,-5 0.236 3 12.0 ALTERNATIVE:2 ENSMUSG00000030232 Aebp2 ENSMUST00000162903 ENSMUSP00000123897 TRANSLATION protein_coding - - 5 496.0 12.0 5.28 0.1 0.0 0.0 -4,-5 0.1434 3 12.0 ALTERNATIVE:2 ENSMUSG00000030232 Aebp2 ENSMUST00000095350 ENSMUSP00000092993 TRANSLATION protein_coding - CCDS39689.2 1 504.0 12.0 5.28 0.0 0.0 0.0 -4,-5 0.1439 3 12.0 ALTERNATIVE:2 ENSMUSG00000030232 Aebp2 ENSMUST00000249349 ENSMUSP00000159711 TRANSLATION protein_coding - - - 282.0 12.0 4.95 0.0 0.0 0.0 -4,-5 0.0659 3 11.34 MINOR ENSMUSG00000005503 Evx1 ENSMUST00000129243 ENSMUSP00000119111 TRANSLATION protein_coding - - 3 201.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000005503 Evx1 ENSMUST00000031787 ENSMUSP00000031787 TRANSLATION protein_coding - CCDS20149.1 1 416.0 0.0 1.13 3.1 73.5 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000095737 Igkv11-125 ENSMUST00000197406 ENSMUSP00000142805 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.1 0.0 55.2 0.0 4,-1 0.8228 - -2.0 PRINCIPAL:1 ENSMUSG00000048108 Tmem72 ENSMUST00000129255 ENSMUSP00000122220 TRANSLATION nonsense_mediated_decay - - 3 63.0 0.0 0.8589 0.0 65.5 2.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000048108 Tmem72 ENSMUST00000056623 ENSMUSP00000057942 TRANSLATION protein_coding - CCDS20462.1 1 275.0 0.0 1.58 8.0 268.5 5.0 -2,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000002797 Ggct ENSMUST00000204301 ENSMUSP00000145291 TRANSLATION nonsense_mediated_decay - - 3 77.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000002797 Ggct ENSMUST00000131475 ENSMUSP00000120154 TRANSLATION protein_coding - CCDS20161.1 1 188.0 0.0 5.33 11.0 35.7 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000002797 Ggct ENSMUST00000204770 - NO_TRANSLATION retained_intron ENSMUSG00000002797 Ggct ENSMUST00000203208 ENSMUSP00000145492 TRANSLATION protein_coding stop - 5 124.0 0.0 3.58 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000002797 Ggct ENSMUST00000136527 - NO_TRANSLATION retained_intron ENSMUSG00000002797 Ggct ENSMUST00000002874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030310 Slc6a1 ENSMUST00000204278 - NO_TRANSLATION retained_intron ENSMUSG00000030310 Slc6a1 ENSMUST00000032454 ENSMUSP00000032454 TRANSLATION protein_coding - CCDS20434.1 1 599.0 0.0 13.48 35.3 773.3 13.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000030310 Slc6a1 ENSMUST00000204074 ENSMUSP00000145080 TRANSLATION protein_coding - - 5 415.0 0.0 9.93 0.0 542.1 11.0 -4,-7 0.0099 4 0.0 MINOR ENSMUSG00000030310 Slc6a1 ENSMUST00000204540 - NO_TRANSLATION retained_intron ENSMUSG00000030310 Slc6a1 ENSMUST00000203330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030310 Slc6a1 ENSMUST00000204600 - NO_TRANSLATION retained_intron ENSMUSG00000030310 Slc6a1 ENSMUST00000203100 - NO_TRANSLATION retained_intron ENSMUSG00000030310 Slc6a1 ENSMUST00000247868 ENSMUSP00000159538 TRANSLATION protein_coding - - - 625.0 0.0 13.48 0.0 773.3 13.0 -4,-7 0.1291 8 12.0 MINOR ENSMUSG00000041741 Pde3a ENSMUST00000189060 - NO_TRANSLATION retained_intron ENSMUSG00000041741 Pde3a ENSMUST00000043259 ENSMUSP00000038749 TRANSLATION protein_coding - CCDS20676.1 1 1141.0 6.0 4.46 2.3 204.6 0.0 -4,-6 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000061838 Suclg2 ENSMUST00000204224 ENSMUSP00000144827 TRANSLATION protein_coding - CCDS20381.1 1 433.0 23.0 10.58 4.0 353.9 0.0 -4,0 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000061838 Suclg2 ENSMUST00000203071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061838 Suclg2 ENSMUST00000204567 ENSMUSP00000145471 TRANSLATION protein_coding stop - 3 83.0 5.0 2.5 0.0 83.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000061838 Suclg2 ENSMUST00000203109 - NO_TRANSLATION retained_intron ENSMUSG00000061838 Suclg2 ENSMUST00000079847 ENSMUSP00000078774 TRANSLATION protein_coding - CCDS85100.1 1 384.0 23.0 9.83 2.0 335.2 0.0 -4,-7 0.3647 17 16.044 MINOR ENSMUSG00000045466 Zfp956 ENSMUST00000101445 ENSMUSP00000098989 TRANSLATION protein_coding - CCDS20101.2 1 572.0 24.0 1.5 0.1 138.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000045466 Zfp956 ENSMUST00000140719 ENSMUSP00000114227 TRANSLATION nonsense_mediated_decay - - 1 194.0 0.0 1.0 0.0 31.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045466 Zfp956 ENSMUST00000174790 - NO_TRANSLATION retained_intron ENSMUSG00000107071 Gm42420 ENSMUST00000126621 ENSMUSP00000144288 TRANSLATION nonsense_mediated_decay,RT start - 3 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000000183 Fgf6 ENSMUST00000000187 ENSMUSP00000000187 TRANSLATION protein_coding - CCDS20561.1 1 208.0 0.0 2.5 30.0 139.4 0.0 -2,0 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036899 Trpv5 ENSMUST00000031901 ENSMUSP00000031901 TRANSLATION protein_coding - CCDS20053.1 1 723.0 0.0 13.75 2.5 122.7 6.0 -4,-7 1.0 - 12.97 PRINCIPAL:1 ENSMUSG00000036899 Trpv5 ENSMUST00000193503 ENSMUSP00000141421 TRANSLATION protein_coding - - 5 674.0 0.0 12.75 0.0 123.2 6.0 -4,-7 0.0467 - 10.002 MINOR ENSMUSG00000076531 Igkv4-92 ENSMUST00000103332 ENSMUSP00000100133 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.2 0.0 50.8 0.0 2,-3 0.8257 - -2.0 PRINCIPAL:1 ENSMUSG00000073043 Atoh1 ENSMUST00000101351 ENSMUSP00000098903 TRANSLATION protein_coding - CCDS20203.1 - 351.0 0.0 0.2 6.4 61.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044156 Hepacam2 ENSMUST00000201276 - NO_TRANSLATION retained_intron ENSMUSG00000044156 Hepacam2 ENSMUST00000049985 ENSMUSP00000058882 TRANSLATION protein_coding - CCDS39414.1 1 463.0 0.0 2.882 9.9 54.6 0.0 -1,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000044156 Hepacam2 ENSMUST00000200854 ENSMUSP00000144362 TRANSLATION protein_coding stop - 3 153.0 0.0 1.1 0.0 54.6 0.0 -4,-5 0.0092 - -2.0 MINOR ENSMUSG00000044156 Hepacam2 ENSMUST00000200972 - NO_TRANSLATION retained_intron ENSMUSG00000044156 Hepacam2 ENSMUST00000201607 ENSMUSP00000143834 TRANSLATION protein_coding stop - 5 206.0 0.0 1.764 0.0 54.6 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000057716 Tmem178b ENSMUST00000180886 ENSMUSP00000137869 TRANSLATION protein_coding - - 5 262.0 0.0 0.0 0.0 36.6 3.0 0,-4 0.0051 2 3.132 MINOR ENSMUSG00000057716 Tmem178b ENSMUST00000180588 - NO_TRANSLATION retained_intron ENSMUSG00000057716 Tmem178b ENSMUST00000061740 ENSMUSP00000055268 TRANSLATION protein_coding - CCDS39465.1 1 139.0 0.0 0.0 0.0 42.6 5.0 -3,-5 0.0428 - 3.648 MINOR ENSMUSG00000057716 Tmem178b ENSMUST00000239008 ENSMUSP00000159180 TRANSLATION protein_coding - - - 294.0 0.0 0.0 33.8 70.1 6.0 0,-4 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000059411 Or2a20 ENSMUST00000076752 ENSMUSP00000076039 TRANSLATION protein_coding - CCDS20091.1 - 321.0 0.0 1.0 0.1 207.7 4.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059411 Or2a20 ENSMUST00000215485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059411 Or2a20 ENSMUST00000216562 ENSMUSP00000149678 TRANSLATION protein_coding - CCDS20091.1 5 321.0 0.0 1.0 0.1 207.7 4.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095486 Vmn2r22 ENSMUST00000170808 ENSMUSP00000132043 TRANSLATION protein_coding - CCDS51900.1 5 853.0 5.0 2.24 0.8 389.3 0.0 2,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000095486 Vmn2r22 ENSMUST00000232854 - NO_TRANSLATION retained_intron ENSMUSG00000076545 Igkv4-72 ENSMUST00000103346 ENSMUSP00000100147 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 60.5 0.0 0,-3 0.7904 - -2.0 PRINCIPAL:1 ENSMUSG00000076518 Igkv2-112 ENSMUST00000103319 ENSMUSP00000100120 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.2 0.0 54.6 0.0 2,-3 0.2874 1 -2.0 ALTERNATIVE:2 ENSMUSG00000076518 Igkv2-112 ENSMUST00000103318 ENSMUSP00000100119 TRANSLATION IG_V_gene stop - - 120.0 0.0 1.2 0.0 54.6 0.0 4,-1 0.8216 1 -2.0 PRINCIPAL:5 ENSMUSG00000019689 Fmc1 ENSMUST00000147651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019689 Fmc1 ENSMUST00000019833 ENSMUSP00000019833 TRANSLATION protein_coding - CCDS20014.1 1 113.0 0.0 0.0 28.2 0.0 0.0 -4,0 1.0 1 4.0 PRINCIPAL:1 ENSMUSG00000051855 Mest ENSMUST00000124665 ENSMUSP00000117713 TRANSLATION protein_coding - CCDS80512.1 1 342.0 3.0 9.08 0.0 54.8 2.0 -4,-7 0.2486 2 15.0 MINOR ENSMUSG00000051855 Mest ENSMUST00000151777 ENSMUSP00000115541 TRANSLATION protein_coding stop - 3 133.0 0.0 2.25 0.0 0.0 2.0 -2,-5 0.0017 - -2.0 MINOR ENSMUSG00000051855 Mest ENSMUST00000157040 ENSMUSP00000119038 TRANSLATION protein_coding - CCDS80513.1 1 326.0 3.0 9.08 28.8 54.8 2.0 0,-4 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000051855 Mest ENSMUST00000137521 - NO_TRANSLATION retained_intron ENSMUSG00000051855 Mest ENSMUST00000115127 ENSMUSP00000110780 TRANSLATION protein_coding stop - 3 112.0 0.0 2.25 0.0 0.0 2.0 -4,-7 0.0017 - -2.0 MINOR ENSMUSG00000051855 Mest ENSMUST00000163949 ENSMUSP00000129639 TRANSLATION protein_coding - CCDS19979.1 1 335.0 3.0 9.08 9.8 54.8 2.0 -2,-6 0.5304 2 16.268 MINOR ENSMUSG00000051855 Mest ENSMUST00000149496 - NO_TRANSLATION retained_intron ENSMUSG00000051855 Mest ENSMUST00000141130 ENSMUSP00000145027 TRANSLATION protein_coding stop - 3 26.0 0.0 0.0 0.0 0.0 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000051855 Mest ENSMUST00000147400 ENSMUSP00000120408 TRANSLATION protein_coding stop - 3 145.0 1.0 3.58 0.0 49.8 2.0 0,-4 0.0143 - -2.0 MINOR ENSMUSG00000051855 Mest ENSMUST00000130751 - NO_TRANSLATION retained_intron ENSMUSG00000051855 Mest ENSMUST00000131465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057691 Zfp746 ENSMUST00000203890 - NO_TRANSLATION retained_intron ENSMUSG00000057691 Zfp746 ENSMUST00000204771 - NO_TRANSLATION retained_intron ENSMUSG00000057691 Zfp746 ENSMUST00000073124 ENSMUSP00000072868 TRANSLATION protein_coding - CCDS51762.1 1 652.0 15.0 1.4 1.3 158.1 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:4 ENSMUSG00000057691 Zfp746 ENSMUST00000203033 ENSMUSP00000144746 TRANSLATION protein_coding start/stop - 5 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057691 Zfp746 ENSMUST00000203609 ENSMUSP00000145506 TRANSLATION protein_coding - CCDS85036.1 5 651.0 15.0 1.4 1.3 158.1 0.0 -4,-5 0.9662 2 15.0 ALTERNATIVE:2 ENSMUSG00000057691 Zfp746 ENSMUST00000203994 - NO_TRANSLATION retained_intron ENSMUSG00000032641 Gpr19 ENSMUST00000203409 ENSMUSP00000145128 TRANSLATION protein_coding stop - 3 135.0 0.0 0.932 0.0 59.5 7.0 -4,-7 0.0042 - -2.0 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000152140 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032641 Gpr19 ENSMUST00000149375 ENSMUSP00000149633 TRANSLATION protein_coding stop - 5 67.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000204908 ENSMUSP00000149612 TRANSLATION protein_coding stop - 3 32.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000156379 ENSMUSP00000150855 TRANSLATION protein_coding stop - 5 54.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000204880 ENSMUSP00000144918 TRANSLATION protein_coding stop - 3 78.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000116515 ENSMUSP00000112214 TRANSLATION protein_coding - CCDS20641.1 1 409.0 0.0 1.252 1.1 150.1 14.0 -4,-7 0.5138 1 12.028 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000111932 ENSMUSP00000107563 TRANSLATION protein_coding - CCDS20641.1 1 409.0 0.0 1.252 1.1 150.1 14.0 -4,-7 0.5138 1 12.028 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000165392 ENSMUSP00000127876 TRANSLATION protein_coding - CCDS20641.1 3 409.0 0.0 1.252 1.1 150.1 14.0 -4,-7 0.5138 1 12.028 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000066107 ENSMUSP00000066287 TRANSLATION protein_coding - - 1 501.0 0.0 1.252 0.0 150.1 14.0 -4,0 0.0994 1 12.0 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000215088 ENSMUSP00000149995 TRANSLATION protein_coding - - 5 464.0 0.0 1.252 0.0 150.1 14.0 -4,-1 0.1001 1 12.0 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000203762 ENSMUSP00000145441 TRANSLATION protein_coding - - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000032641 Gpr19 ENSMUST00000046255 ENSMUSP00000047630 TRANSLATION protein_coding - CCDS51937.1 1 415.0 0.0 1.252 15.8 150.1 14.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000115343 Vmn1r21 ENSMUST00000203488 ENSMUSP00000144978 TRANSLATION protein_coding - CCDS20186.1 2 297.0 0.0 0.0 0.1 171.4 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115343 Vmn1r21 ENSMUST00000226191 ENSMUSP00000154295 TRANSLATION protein_coding - CCDS20186.1 - 297.0 0.0 0.0 0.1 171.4 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115343 Vmn1r21 ENSMUST00000203310 ENSMUSP00000145398 TRANSLATION protein_coding - CCDS20186.1 2 297.0 0.0 0.0 0.1 171.4 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030209 Grin2b ENSMUST00000111905 ENSMUSP00000107536 TRANSLATION protein_coding - CCDS20648.1 5 1482.0 14.0 10.4 6.9 1067.7 3.0 -1,-3 1.0 32 20.0 PRINCIPAL:1 ENSMUSG00000030209 Grin2b ENSMUST00000198283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030209 Grin2b ENSMUST00000125905 ENSMUSP00000139706 TRANSLATION protein_coding stop - 1 35.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0 - -2.0 MINOR ENSMUSG00000030209 Grin2b ENSMUST00000053880 ENSMUSP00000062284 TRANSLATION protein_coding - CCDS20648.1 5 1482.0 14.0 10.4 6.9 1067.7 3.0 -1,-3 1.0 32 20.0 PRINCIPAL:1 ENSMUSG00000030209 Grin2b ENSMUST00000143943 ENSMUSP00000140710 TRANSLATION protein_coding stop - 1 35.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0 - -2.0 MINOR ENSMUSG00000030209 Grin2b ENSMUST00000188999 ENSMUSP00000140452 TRANSLATION protein_coding stop - 1 36.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0 - -2.0 MINOR ENSMUSG00000030209 Grin2b ENSMUST00000152012 ENSMUSP00000142696 TRANSLATION protein_coding - - 1 337.0 0.0 2.2 0.0 45.1 0.0 -1,-3 0.0 6 0.0 MINOR ENSMUSG00000029867 Llcfc1 ENSMUST00000031900 ENSMUSP00000031900 TRANSLATION protein_coding - CCDS20054.1 1 108.0 0.0 0.0 4.2 117.9 0.0 2,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000054474 Thnsl2 ENSMUST00000170455 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054474 Thnsl2 ENSMUST00000160918 ENSMUSP00000124423 TRANSLATION protein_coding - CCDS20225.1 1 483.0 17.0 9.58 6.0 144.2 0.0 -4,-7 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000054474 Thnsl2 ENSMUST00000074241 ENSMUSP00000073861 TRANSLATION protein_coding - CCDS20225.1 5 483.0 17.0 9.58 6.0 144.2 0.0 -4,-7 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000054474 Thnsl2 ENSMUST00000170753 ENSMUSP00000129994 TRANSLATION protein_coding start/stop - 2 159.0 3.0 3.75 0.0 0.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000014747 Ankrd53 ENSMUST00000206496 ENSMUSP00000145973 TRANSLATION protein_coding stop - 1 354.0 0.0 3.2 0.0 58.0 0.0 -4,-7 0.0225 - -2.0 MINOR ENSMUSG00000014747 Ankrd53 ENSMUST00000014891 ENSMUSP00000014891 TRANSLATION protein_coding - CCDS20284.1 1 497.0 0.0 3.9 0.0 45.8 0.0 -4,-7 0.9524 - 10.74 PRINCIPAL:1 ENSMUSG00000023439 Gnb3 ENSMUST00000140233 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023439 Gnb3 ENSMUST00000129251 - NO_TRANSLATION retained_intron ENSMUSG00000023439 Gnb3 ENSMUST00000024206 ENSMUSP00000024206 TRANSLATION protein_coding - CCDS20532.1 1 340.0 0.0 7.5 36.9 153.0 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000023439 Gnb3 ENSMUST00000135996 - NO_TRANSLATION retained_intron ENSMUSG00000029678 Hyal5 ENSMUST00000200968 ENSMUSP00000144011 TRANSLATION protein_coding - CCDS19948.1 1 526.0 0.0 3.0 1.3 464.5 0.0 -4,-5 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000029678 Hyal5 ENSMUST00000031689 ENSMUSP00000031689 TRANSLATION protein_coding - CCDS19948.1 5 526.0 0.0 3.0 1.3 464.5 0.0 -4,-5 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000029678 Hyal5 ENSMUST00000201585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055003 Lrtm2 ENSMUST00000068351 ENSMUSP00000063882 TRANSLATION protein_coding - CCDS20472.1 2 370.0 0.0 1.295 15.6 82.8 1.0 -3,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000055003 Lrtm2 ENSMUST00000112756 ENSMUSP00000108376 TRANSLATION protein_coding - CCDS20472.1 1 370.0 0.0 1.295 15.6 82.8 1.0 -3,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000055003 Lrtm2 ENSMUST00000168793 ENSMUSP00000126661 TRANSLATION protein_coding - CCDS20472.1 5 370.0 0.0 1.295 15.6 82.8 1.0 -3,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000055003 Lrtm2 ENSMUST00000124192 ENSMUSP00000115884 TRANSLATION protein_coding stop - 2 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078179 Rnf148 ENSMUST00000104979 ENSMUSP00000100592 TRANSLATION protein_coding - CCDS51726.1 - 316.0 8.0 1.0 0.4 78.9 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000045725 Prr15 ENSMUST00000059138 ENSMUSP00000049549 TRANSLATION protein_coding - CCDS20155.1 1 122.0 0.0 0.0 4.5 81.1 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000045725 Prr15 ENSMUST00000204057 - NO_TRANSLATION retained_intron ENSMUSG00000061208 Vmn1r8 ENSMUST00000078186 ENSMUSP00000093561 TRANSLATION protein_coding - CCDS20174.1 - 303.0 0.0 0.0 0.4 193.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061208 Vmn1r8 ENSMUST00000228690 ENSMUSP00000154298 TRANSLATION protein_coding - CCDS20174.1 - 303.0 0.0 0.0 0.4 193.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061208 Vmn1r8 ENSMUST00000227706 ENSMUSP00000154544 TRANSLATION protein_coding - CCDS20174.1 - 303.0 0.0 0.0 0.4 193.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030287 Itpr2 ENSMUST00000139732 ENSMUSP00000119110 TRANSLATION nonsense_mediated_decay - - 1 79.0 0.0 0.75 0.0 31.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030287 Itpr2 ENSMUST00000155339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030287 Itpr2 ENSMUST00000204901 - NO_TRANSLATION retained_intron ENSMUSG00000030287 Itpr2 ENSMUST00000145418 - NO_TRANSLATION retained_intron ENSMUSG00000030287 Itpr2 ENSMUST00000111673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030287 Itpr2 ENSMUST00000203292 ENSMUSP00000144726 TRANSLATION protein_coding start/stop - 3 192.0 0.0 3.8 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000030287 Itpr2 ENSMUST00000144557 - NO_TRANSLATION retained_intron ENSMUSG00000030287 Itpr2 ENSMUST00000079573 ENSMUSP00000078526 TRANSLATION protein_coding - CCDS39708.1 1 2668.0 8.0 29.0825 0.0 883.5 0.0 -4,-7 0.3294 44 11.904 MINOR ENSMUSG00000030287 Itpr2 ENSMUST00000131890 ENSMUSP00000121773 TRANSLATION protein_coding start - 1 633.0 4.0 10.55 0.0 276.3 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000030287 Itpr2 ENSMUST00000137938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030287 Itpr2 ENSMUST00000053273 ENSMUSP00000049584 TRANSLATION protein_coding - CCDS39709.1 1 2701.0 8.0 30.0825 14.6 951.8 0.0 -4,-7 1.0 47 22.0 PRINCIPAL:1 ENSMUSG00000046717 Igbp1b ENSMUST00000054786 ENSMUSP00000050818 TRANSLATION protein_coding - CCDS20670.1 - 343.0 0.0 0.64 1.8 274.5 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000002897 Il17ra ENSMUST00000002976 ENSMUSP00000002976 TRANSLATION protein_coding - CCDS20482.1 1 864.0 0.0 7.01 0.3 555.7 0.0 4,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000002897 Il17ra ENSMUST00000204239 - NO_TRANSLATION retained_intron ENSMUSG00000002897 Il17ra ENSMUST00000204078 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076469 Trbv13-2 ENSMUST00000103270 ENSMUSP00000100086 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.0 0.0 61.9 0.0 4,-3 0.8251 - -2.0 PRINCIPAL:1 ENSMUSG00000030301 Ccdc91 ENSMUST00000156106 ENSMUSP00000122635 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0107 - -2.0 MINOR ENSMUSG00000030301 Ccdc91 ENSMUST00000111614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030301 Ccdc91 ENSMUST00000203659 ENSMUSP00000144722 TRANSLATION protein_coding stop - 3 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0159 - -2.0 MINOR ENSMUSG00000030301 Ccdc91 ENSMUST00000032441 ENSMUSP00000032441 TRANSLATION protein_coding - CCDS20707.1 1 442.0 0.0 7.9 10.1 0.0 0.0 -4,-5 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000030020 Prickle2 ENSMUST00000113446 ENSMUSP00000109073 TRANSLATION protein_coding - CCDS51854.1 1 845.0 23.0 4.6 7.4 230.8 0.0 -4,-5 0.7803 18 20.064 MINOR ENSMUSG00000030020 Prickle2 ENSMUST00000032093 ENSMUSP00000032093 TRANSLATION protein_coding - CCDS39572.1 1 901.0 23.0 4.6 13.4 230.8 0.0 -4,-1 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000030020 Prickle2 ENSMUST00000113445 ENSMUSP00000109072 TRANSLATION protein_coding - CCDS51854.1 1 845.0 23.0 4.6 7.4 230.8 0.0 -4,-5 0.7803 18 20.064 MINOR ENSMUSG00000030020 Prickle2 ENSMUST00000113447 ENSMUSP00000109074 TRANSLATION protein_coding - CCDS51854.1 1 845.0 23.0 4.6 7.4 230.8 0.0 -4,-5 0.7803 18 20.064 MINOR ENSMUSG00000076505 Igkv1-131 ENSMUST00000103306 ENSMUSP00000100107 TRANSLATION IG_V_gene stop - - 120.0 0.0 1.0 0.0 56.6 0.0 4,-1 0.8251 - -2.0 PRINCIPAL:1 ENSMUSG00000076486 Trbj1-4 ENSMUST00000103287 ENSMUSP00000142193 TRANSLATION TR_J_gene start/stop - - 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000030059 Tmf1 ENSMUST00000095664 ENSMUSP00000093325 TRANSLATION protein_coding - CCDS39575.1 1 1091.0 7.0 0.0 8.1 185.6 0.0 -4,-7 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000030059 Tmf1 ENSMUST00000204190 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030059 Tmf1 ENSMUST00000124173 ENSMUSP00000120093 TRANSLATION nonsense_mediated_decay - - 5 784.0 7.0 0.0 0.0 75.1 0.0 -4,-7 0.0104 11 -2.0 MINOR ENSMUSG00000030249 Abcc9 ENSMUST00000111771 ENSMUSP00000107401 TRANSLATION protein_coding - - 5 1533.0 23.0 31.49 6.6 404.9 28.0 -4,-7 0.7023 15 15.443 MINOR ENSMUSG00000030249 Abcc9 ENSMUST00000205202 ENSMUSP00000144779 TRANSLATION protein_coding - CCDS39697.1 5 1511.0 23.0 31.61 0.0 412.3 28.0 -4,-7 0.3741 14 13.442 MINOR ENSMUSG00000030249 Abcc9 ENSMUST00000204870 ENSMUSP00000145489 TRANSLATION protein_coding - - 2 159.0 0.0 3.0 0.0 0.0 4.0 -4,-7 0.0024 - 0.0 MINOR ENSMUSG00000030249 Abcc9 ENSMUST00000073173 ENSMUSP00000072914 TRANSLATION protein_coding - CCDS39697.1 5 1511.0 23.0 31.61 0.0 412.3 28.0 -4,-7 0.3741 14 13.442 MINOR ENSMUSG00000030249 Abcc9 ENSMUST00000087527 ENSMUSP00000084805 TRANSLATION protein_coding - CCDS39699.1 1 1546.0 23.0 31.69 8.5 412.3 28.0 -4,-7 0.9974 15 16.598 PRINCIPAL:3 ENSMUSG00000030249 Abcc9 ENSMUST00000100827 ENSMUSP00000098390 TRANSLATION protein_coding - CCDS39696.1 1 1546.0 23.0 31.89 8.5 412.3 28.0 -4,-7 1.0 14 17.0 ALTERNATIVE:1 ENSMUSG00000029829 Tmem213 ENSMUST00000031851 ENSMUSP00000031851 TRANSLATION protein_coding - CCDS51748.1 1 127.0 0.0 0.8 1.5 139.7 0.0 -2,0 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000076562 Igkv4-50 ENSMUST00000103363 ENSMUSP00000100164 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 62.1 0.0 1,-3 0.8281 2 -2.0 PRINCIPAL:1 ENSMUSG00000079679 Vwde ENSMUST00000203074 ENSMUSP00000145311 TRANSLATION protein_coding - - 5 1773.0 18.0 10.25 0.0 66.1 0.0 1,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000079679 Vwde ENSMUST00000204339 - NO_TRANSLATION retained_intron ENSMUSG00000079679 Vwde ENSMUST00000204800 - NO_TRANSLATION retained_intron ENSMUSG00000079679 Vwde ENSMUST00000054530 ENSMUSP00000058110 TRANSLATION protein_coding - CCDS51722.1 1 926.0 0.0 1.05 0.0 43.6 0.0 1,-5 0.1206 - 3.96 MINOR ENSMUSG00000037826 Ppm1k ENSMUST00000042766 ENSMUSP00000041395 TRANSLATION protein_coding - CCDS20183.1 1 372.0 11.0 5.8 23.8 192.8 0.0 -4,0 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000037826 Ppm1k ENSMUST00000203713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037826 Ppm1k ENSMUST00000204607 ENSMUSP00000145312 TRANSLATION protein_coding start - 5 101.0 3.0 2.33 0.0 81.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030048 Gkn3 ENSMUST00000032127 ENSMUSP00000032127 TRANSLATION protein_coding - CCDS20320.1 1 191.0 0.0 1.098 0.7 75.6 0.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058446 Znrf2 ENSMUST00000127331 ENSMUSP00000123316 TRANSLATION protein_coding start - 2 94.0 4.0 2.5 0.0 39.7 0.0 -4,-6 0.0142 - -2.0 MINOR ENSMUSG00000058446 Znrf2 ENSMUST00000079869 ENSMUSP00000078795 TRANSLATION protein_coding - CCDS20159.1 1 238.0 4.0 2.5 2.4 39.7 0.0 -4,-6 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000058446 Znrf2 ENSMUST00000148425 ENSMUSP00000145276 TRANSLATION nonsense_mediated_decay start - 5 75.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000041301 Cftr ENSMUST00000129452 ENSMUSP00000115334 TRANSLATION protein_coding - - 1 529.0 10.0 10.1 0.0 177.8 9.0 -4,-7 0.0039 3 0.0 MINOR ENSMUSG00000041301 Cftr ENSMUST00000140407 ENSMUSP00000116957 TRANSLATION nonsense_mediated_decay - - 5 576.0 10.0 11.43 0.0 203.2 9.0 -4,-7 0.0041 3 -2.0 MINOR ENSMUSG00000041301 Cftr ENSMUST00000115406 ENSMUSP00000111065 TRANSLATION protein_coding - - 5 1446.0 21.0 18.896 0.0 729.2 18.0 -4,-7 0.142 11 11.664 MINOR ENSMUSG00000041301 Cftr ENSMUST00000140532 - NO_TRANSLATION retained_intron ENSMUSG00000041301 Cftr ENSMUST00000115405 ENSMUSP00000111064 TRANSLATION nonsense_mediated_decay - - 5 600.0 10.0 11.646 0.0 201.4 9.0 -4,-7 0.0041 3 -2.0 MINOR ENSMUSG00000041301 Cftr ENSMUST00000045706 ENSMUSP00000049228 TRANSLATION protein_coding - CCDS19930.1 1 1476.0 21.0 19.896 6.9 801.5 18.0 -4,-7 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000121578 ENSMUSG00000121578 ENSMUST00000249251 ENSMUSP00000159631 TRANSLATION protein_coding - - - 65.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000053470 Kdm3a ENSMUST00000205470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053470 Kdm3a ENSMUST00000206339 - NO_TRANSLATION retained_intron ENSMUSG00000053470 Kdm3a ENSMUST00000205289 ENSMUSP00000145719 TRANSLATION protein_coding stop - 1 834.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0099 24 -2.0 MINOR ENSMUSG00000053470 Kdm3a ENSMUST00000206582 - NO_TRANSLATION retained_intron ENSMUSG00000053470 Kdm3a ENSMUST00000206798 - NO_TRANSLATION retained_intron ENSMUSG00000053470 Kdm3a ENSMUST00000206050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053470 Kdm3a ENSMUST00000065509 ENSMUSP00000065716 TRANSLATION protein_coding - CCDS20233.1 1 1323.0 7.0 8.15 8.5 63.2 0.0 -4,-6 1.0 26 21.0 PRINCIPAL:1 ENSMUSG00000053470 Kdm3a ENSMUST00000205505 - NO_TRANSLATION retained_intron ENSMUSG00000053470 Kdm3a ENSMUST00000206597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053470 Kdm3a ENSMUST00000167220 ENSMUSP00000128789 TRANSLATION protein_coding - CCDS20233.1 1 1323.0 7.0 8.15 8.5 63.2 0.0 -4,-6 1.0 26 21.0 PRINCIPAL:1 ENSMUSG00000053470 Kdm3a ENSMUST00000207023 ENSMUSP00000145959 TRANSLATION protein_coding - CCDS20233.1 5 1323.0 7.0 8.15 8.5 63.2 0.0 -4,-6 1.0 26 21.0 PRINCIPAL:1 ENSMUSG00000053470 Kdm3a ENSMUST00000206357 - NO_TRANSLATION retained_intron ENSMUSG00000053470 Kdm3a ENSMUST00000206916 ENSMUSP00000145992 TRANSLATION nonsense_mediated_decay start - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053470 Kdm3a ENSMUST00000206704 - NO_TRANSLATION retained_intron ENSMUSG00000042505 Sdhaf3 ENSMUST00000123848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042505 Sdhaf3 ENSMUST00000040826 ENSMUSP00000040935 TRANSLATION protein_coding - CCDS39423.1 1 125.0 0.0 2.0 13.2 64.4 0.0 -4,0 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000053768 Chchd3 ENSMUST00000115091 ENSMUSP00000110743 TRANSLATION protein_coding - - 1 175.0 0.0 3.75 0.0 166.6 0.0 -4,-5 0.0 8 7.794 MINOR ENSMUSG00000053768 Chchd3 ENSMUST00000129069 ENSMUSP00000121589 TRANSLATION protein_coding start - 3 89.0 0.0 3.08 0.0 50.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053768 Chchd3 ENSMUST00000124436 ENSMUSP00000138484 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 0.75 0.0 53.4 0.0 -4,-5 0.0295 6 -2.0 MINOR ENSMUSG00000053768 Chchd3 ENSMUST00000127666 ENSMUSP00000123220 TRANSLATION protein_coding stop - 2 192.0 0.0 4.25 0.0 175.7 0.0 -4,-5 0.0021 9 -2.0 MINOR ENSMUSG00000053768 Chchd3 ENSMUST00000140446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053768 Chchd3 ENSMUST00000143206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053768 Chchd3 ENSMUST00000125264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053768 Chchd3 ENSMUST00000129654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053768 Chchd3 ENSMUST00000066379 ENSMUSP00000070149 TRANSLATION protein_coding - CCDS19986.1 1 227.0 0.0 5.58 11.0 166.6 0.0 -4,-5 1.0 10 14.454 PRINCIPAL:1 ENSMUSG00000053768 Chchd3 ENSMUST00000133375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030350 Prmt8 ENSMUST00000032500 ENSMUSP00000032500 TRANSLATION protein_coding - CCDS57449.1 1 394.0 21.0 8.1 25.8 33.7 0.0 -4,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000000811 Txnrd3 ENSMUST00000101171 ENSMUSP00000098730 TRANSLATION protein_coding - CCDS57437.1 1 501.0 46.0 13.0 0.0 186.3 0.0 -4,-1 0.0141 6 4.938 MINOR ENSMUSG00000000811 Txnrd3 ENSMUST00000000828 ENSMUSP00000000828 TRANSLATION protein_coding - CCDS57436.1 1 615.0 65.0 15.0 2.4 237.3 0.0 -4,-1 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000053391 Or13a1 ENSMUST00000065786 ENSMUSP00000066524 TRANSLATION protein_coding - CCDS20453.1 - 309.0 0.0 1.0 8.5 165.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053391 Or13a1 ENSMUST00000203700 ENSMUSP00000145330 TRANSLATION protein_coding - CCDS20453.1 2 309.0 0.0 1.0 8.5 165.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000001520 Nrip2 ENSMUST00000136631 - NO_TRANSLATION retained_intron ENSMUSG00000001520 Nrip2 ENSMUST00000123867 ENSMUSP00000122558 TRANSLATION protein_coding stop - 5 219.0 0.0 0.975 0.0 23.1 0.0 -4,-5 0.0352 7 -2.0 MINOR ENSMUSG00000001520 Nrip2 ENSMUST00000147155 ENSMUSP00000122305 TRANSLATION nonsense_mediated_decay start - 5 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000001520 Nrip2 ENSMUST00000204836 ENSMUSP00000144750 TRANSLATION non_stop_decay start/stop - 5 190.0 0.0 0.975 0.0 23.1 0.0 -4,-2 0.0147 5 -2.0 MINOR ENSMUSG00000001520 Nrip2 ENSMUST00000120405 ENSMUSP00000113317 TRANSLATION protein_coding - CCDS51917.1 2 270.0 0.0 0.975 0.0 22.0 0.0 -4,-5 0.0827 7 8.346 MINOR ENSMUSG00000001520 Nrip2 ENSMUST00000001561 ENSMUSP00000001561 TRANSLATION protein_coding - CCDS20571.1 1 229.0 0.0 1.575 2.0 28.5 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000079343 C1s2 ENSMUST00000218020 ENSMUSP00000151642 TRANSLATION protein_coding - CCDS20522.2 1 694.0 31.0 9.0 7.3 429.6 0.0 3,-2 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000079343 C1s2 ENSMUST00000068797 ENSMUSP00000066999 TRANSLATION protein_coding - - 1 688.0 31.0 9.0 3.1 429.6 0.0 3,-2 0.6234 1 18.666 MINOR ENSMUSG00000004631 Sgce ENSMUST00000004750 ENSMUSP00000004750 TRANSLATION protein_coding - CCDS85013.1 1 451.0 0.0 0.0 5.3 407.2 2.0 -4,-7 0.7617 9 1.72 MINOR ENSMUSG00000004631 Sgce ENSMUST00000115577 ENSMUSP00000111240 TRANSLATION protein_coding - CCDS51718.1 1 473.0 0.0 0.0 6.0 427.4 2.0 -2,-5 1.0 10 2.0 PRINCIPAL:2 ENSMUSG00000004631 Sgce ENSMUST00000139029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004631 Sgce ENSMUST00000126151 ENSMUSP00000120718 TRANSLATION protein_coding - - 5 396.0 0.0 0.0 2.0 397.5 2.0 -4,-7 0.0904 9 0.4 MINOR ENSMUSG00000004631 Sgce ENSMUST00000101677 ENSMUSP00000099200 TRANSLATION protein_coding - CCDS51715.1 1 434.0 0.0 0.0 0.1 407.2 2.0 -4,-7 0.0844 9 0.0 MINOR ENSMUSG00000004631 Sgce ENSMUST00000204897 - NO_TRANSLATION retained_intron ENSMUSG00000004631 Sgce ENSMUST00000090686 ENSMUSP00000088185 TRANSLATION protein_coding - - 5 428.0 0.0 0.0 4.6 407.2 2.0 -4,-7 0.3834 9 1.44 MINOR ENSMUSG00000004631 Sgce ENSMUST00000123907 ENSMUSP00000120910 TRANSLATION nonsense_mediated_decay start - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004631 Sgce ENSMUST00000203556 - NO_TRANSLATION retained_intron ENSMUSG00000004631 Sgce ENSMUST00000133306 ENSMUSP00000121964 TRANSLATION protein_coding - CCDS51717.1 1 443.0 0.0 0.0 0.1 431.2 2.0 -4,-7 0.2318 10 0.0 MINOR ENSMUSG00000004631 Sgce ENSMUST00000115579 ENSMUSP00000111242 TRANSLATION protein_coding - CCDS51716.1 1 437.0 0.0 0.0 4.6 431.2 2.0 -4,-7 0.6713 10 1.44 ALTERNATIVE:1 ENSMUSG00000004631 Sgce ENSMUST00000153284 - NO_TRANSLATION retained_intron ENSMUSG00000004631 Sgce ENSMUST00000128109 - NO_TRANSLATION retained_intron ENSMUSG00000001930 Vwf ENSMUST00000150548 - NO_TRANSLATION retained_intron ENSMUSG00000001930 Vwf ENSMUST00000147101 ENSMUSP00000138132 TRANSLATION nonsense_mediated_decay start - 1 385.0 0.0 0.681 0.0 106.8 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000001930 Vwf ENSMUST00000126709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001930 Vwf ENSMUST00000139678 - NO_TRANSLATION retained_intron ENSMUSG00000001930 Vwf ENSMUST00000112254 ENSMUSP00000107873 TRANSLATION protein_coding - CCDS20552.1 1 2813.0 4.0 25.865 3.1 1176.5 0.0 4,-1 1.0 60 17.0 PRINCIPAL:1 ENSMUSG00000001930 Vwf ENSMUST00000112253 ENSMUSP00000107872 TRANSLATION protein_coding - - 1 405.0 0.0 3.88 0.0 198.8 0.0 4,-1 0.0 10 0.0 MINOR ENSMUSG00000001930 Vwf ENSMUST00000129436 - NO_TRANSLATION retained_intron ENSMUSG00000001930 Vwf ENSMUST00000134073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001930 Vwf ENSMUST00000146264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001930 Vwf ENSMUST00000100941 ENSMUSP00000098502 TRANSLATION protein_coding - - 5 420.0 0.0 3.88 0.0 198.8 0.0 -1,-5 0.0 10 0.0 MINOR ENSMUSG00000001930 Vwf ENSMUST00000141521 - NO_TRANSLATION retained_intron ENSMUSG00000030200 Bcl2l14 ENSMUST00000127865 ENSMUSP00000115608 TRANSLATION protein_coding stop - 3 126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0133 3 -2.0 MINOR ENSMUSG00000030200 Bcl2l14 ENSMUST00000111960 ENSMUSP00000107591 TRANSLATION protein_coding - CCDS20636.1 1 328.0 0.0 0.68 2.1 0.0 0.0 -4,-5 1.0 13 7.0 PRINCIPAL:1 ENSMUSG00000030200 Bcl2l14 ENSMUST00000032321 ENSMUSP00000032321 TRANSLATION protein_coding - CCDS20636.1 1 328.0 0.0 0.68 2.1 0.0 0.0 -4,-5 1.0 13 7.0 PRINCIPAL:1 ENSMUSG00000030200 Bcl2l14 ENSMUST00000139183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030200 Bcl2l14 ENSMUST00000142612 - NO_TRANSLATION retained_intron ENSMUSG00000030200 Bcl2l14 ENSMUST00000163589 ENSMUSP00000132525 TRANSLATION protein_coding - CCDS20636.1 5 328.0 0.0 0.68 2.1 0.0 0.0 -4,-5 1.0 13 7.0 PRINCIPAL:1 ENSMUSG00000094626 Tmem121b ENSMUST00000178687 ENSMUSP00000135924 TRANSLATION protein_coding - CCDS57446.1 - 572.0 0.0 0.0 0.3 194.4 0.0 -3,1 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000030089 Slc41a3 ENSMUST00000044019 ENSMUSP00000037473 TRANSLATION protein_coding - CCDS20362.1 1 488.0 0.0 9.0 5.6 177.0 11.0 -4,-5 1.0 4 10.0 PRINCIPAL:3 ENSMUSG00000030089 Slc41a3 ENSMUST00000032177 ENSMUSP00000032177 TRANSLATION protein_coding - CCDS20363.1 1 462.0 0.0 9.0 4.6 177.0 11.0 -4,-2 0.8406 3 9.566 ALTERNATIVE:1 ENSMUSG00000094569 Trbd2 ENSMUST00000178862 ENSMUSP00000141312 TRANSLATION TR_D_gene start/stop - - 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000030346 Rad51ap1 ENSMUST00000144954 ENSMUSP00000122978 TRANSLATION protein_coding stop - 3 179.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000030346 Rad51ap1 ENSMUST00000202191 - NO_TRANSLATION retained_intron ENSMUSG00000030346 Rad51ap1 ENSMUST00000202835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030346 Rad51ap1 ENSMUST00000112221 ENSMUSP00000107841 TRANSLATION protein_coding - CCDS39644.1 1 337.0 0.0 0.0 4.8 60.0 0.0 -4,-6 0.8921 6 3.52 ALTERNATIVE:1 ENSMUSG00000030346 Rad51ap1 ENSMUST00000202897 ENSMUSP00000144327 TRANSLATION nonsense_mediated_decay - - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000030346 Rad51ap1 ENSMUST00000201102 - NO_TRANSLATION retained_intron ENSMUSG00000030346 Rad51ap1 ENSMUST00000141212 - NO_TRANSLATION retained_intron ENSMUSG00000030346 Rad51ap1 ENSMUST00000123837 - NO_TRANSLATION retained_intron ENSMUSG00000030346 Rad51ap1 ENSMUST00000112220 ENSMUSP00000107839 TRANSLATION protein_coding - CCDS85161.1 1 336.0 0.0 0.0 6.0 60.0 0.0 -4,-6 1.0 6 4.0 PRINCIPAL:4 ENSMUSG00000030346 Rad51ap1 ENSMUST00000201760 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023964 Calcr ENSMUST00000168592 ENSMUSP00000130243 TRANSLATION protein_coding - CCDS39416.1 5 496.0 0.0 9.0 0.1 362.6 9.0 1,-3 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000023964 Calcr ENSMUST00000171613 ENSMUSP00000130083 TRANSLATION protein_coding - CCDS39416.1 1 496.0 0.0 9.0 0.1 362.6 9.0 1,-3 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000023964 Calcr ENSMUST00000075644 ENSMUSP00000075070 TRANSLATION protein_coding - CCDS39417.1 1 533.0 0.0 9.0 0.1 359.2 9.0 1,-3 0.3493 - 6.8 MINOR ENSMUSG00000023964 Calcr ENSMUST00000115622 ENSMUSP00000111285 TRANSLATION protein_coding - CCDS39416.1 1 496.0 0.0 9.0 0.1 362.6 9.0 1,-3 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000023964 Calcr ENSMUST00000170266 ENSMUSP00000132124 TRANSLATION protein_coding - CCDS39417.1 1 533.0 0.0 9.0 0.1 359.2 9.0 1,-3 0.3493 - 6.8 MINOR ENSMUSG00000030083 Abtb1 ENSMUST00000203120 ENSMUSP00000145338 TRANSLATION nonsense_mediated_decay start - 3 16.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030083 Abtb1 ENSMUST00000203514 - NO_TRANSLATION retained_intron ENSMUSG00000030083 Abtb1 ENSMUST00000203272 ENSMUSP00000144802 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.598 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030083 Abtb1 ENSMUST00000204458 ENSMUSP00000145144 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.598 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030083 Abtb1 ENSMUST00000032169 ENSMUSP00000032169 TRANSLATION protein_coding - CCDS20339.1 1 478.0 0.0 4.887 29.0 164.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030083 Abtb1 ENSMUST00000204327 ENSMUSP00000145110 TRANSLATION nonsense_mediated_decay start - 3 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030083 Abtb1 ENSMUST00000204560 - NO_TRANSLATION retained_intron ENSMUSG00000030083 Abtb1 ENSMUST00000205082 ENSMUSP00000144915 TRANSLATION nonsense_mediated_decay start - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030083 Abtb1 ENSMUST00000203137 ENSMUSP00000144757 TRANSLATION nonsense_mediated_decay - - 1 36.0 0.0 0.598 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030083 Abtb1 ENSMUST00000203460 - NO_TRANSLATION retained_intron ENSMUSG00000030083 Abtb1 ENSMUST00000204932 ENSMUSP00000144922 TRANSLATION nonsense_mediated_decay - - 2 40.0 0.0 0.598 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030083 Abtb1 ENSMUST00000203864 ENSMUSP00000145252 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 1.098 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057699 Tas2r131 ENSMUST00000082085 ENSMUSP00000080736 TRANSLATION protein_coding - CCDS20630.1 - 310.0 0.0 0.0 0.3 218.9 0.0 0,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000019124 Scrn1 ENSMUST00000019268 ENSMUSP00000019268 TRANSLATION protein_coding - CCDS20156.1 1 414.0 0.0 6.35 22.0 0.0 0.0 -4,-7 1.0 17 10.0 PRINCIPAL:1 ENSMUSG00000019124 Scrn1 ENSMUST00000205108 ENSMUSP00000145208 TRANSLATION protein_coding start - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0081 1 -2.0 MINOR ENSMUSG00000019124 Scrn1 ENSMUST00000140235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019124 Scrn1 ENSMUST00000124325 - NO_TRANSLATION retained_intron ENSMUSG00000019124 Scrn1 ENSMUST00000203800 ENSMUSP00000145469 TRANSLATION protein_coding start - 3 164.0 0.0 2.4 0.0 0.0 0.0 -4,-5 0.0006 7 -2.0 MINOR ENSMUSG00000019124 Scrn1 ENSMUST00000129744 ENSMUSP00000118255 TRANSLATION protein_coding stop - 5 76.0 0.0 1.55 0.0 0.0 0.0 -4,-7 0.0076 4 -2.0 MINOR ENSMUSG00000055239 Kcmf1 ENSMUST00000204598 ENSMUSP00000144910 TRANSLATION protein_coding - CCDS85066.1 1 330.0 8.0 1.565 7.8 78.0 0.0 -4,-5 0.1733 4 8.984 MINOR ENSMUSG00000055239 Kcmf1 ENSMUST00000206378 ENSMUSP00000145559 TRANSLATION protein_coding - - 5 110.0 12.0 1.763 0.0 88.3 0.0 -4,-5 0.0 2 11.346 MINOR ENSMUSG00000055239 Kcmf1 ENSMUST00000203004 - NO_TRANSLATION retained_intron ENSMUSG00000055239 Kcmf1 ENSMUST00000068697 ENSMUSP00000064410 TRANSLATION protein_coding - CCDS39518.1 1 381.0 16.0 2.563 20.6 123.6 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000055239 Kcmf1 ENSMUST00000203431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055239 Kcmf1 ENSMUST00000204708 ENSMUSP00000144907 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 1 -2.0 MINOR ENSMUSG00000079654 Prrt4 ENSMUST00000159200 ENSMUSP00000123751 TRANSLATION protein_coding - CCDS51734.1 1 902.0 0.0 0.0 8.0 0.0 0.0 2,-2 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000079298 Klrb1b ENSMUST00000172887 ENSMUSP00000134637 TRANSLATION protein_coding - - 1 145.0 0.0 2.28 0.0 0.0 1.0 -4,-6 0.003 1 1.338 MINOR ENSMUSG00000079298 Klrb1b ENSMUST00000174544 ENSMUSP00000134022 TRANSLATION protein_coding stop - 3 97.0 0.0 1.55 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079298 Klrb1b ENSMUST00000205130 ENSMUSP00000144964 TRANSLATION protein_coding - - 1 199.0 0.0 3.86 0.0 76.6 1.0 -4,-6 0.0159 1 10.5 MINOR ENSMUSG00000079298 Klrb1b ENSMUST00000032472 ENSMUSP00000032472 TRANSLATION protein_coding - CCDS39655.1 1 223.0 0.0 4.61 0.1 76.6 1.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000046500 Tafa4 ENSMUST00000089295 ENSMUSP00000086710 TRANSLATION protein_coding - CCDS51858.1 1 135.0 0.0 2.16 4.4 159.3 0.0 2,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000046500 Tafa4 ENSMUST00000203930 - NO_TRANSLATION retained_intron ENSMUSG00000034023 Fancd2 ENSMUST00000124262 - NO_TRANSLATION retained_intron ENSMUSG00000034023 Fancd2 ENSMUST00000204827 ENSMUSP00000144928 TRANSLATION protein_coding - CCDS85123.1 1 1437.0 0.0 17.3975 0.0 2445.9 0.0 -4,-5 0.4986 7 8.772 MINOR ENSMUSG00000034023 Fancd2 ENSMUST00000036340 ENSMUSP00000045667 TRANSLATION protein_coding - CCDS20426.1 1 1450.0 0.0 17.3975 1.1 2499.7 0.0 -4,-5 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000034023 Fancd2 ENSMUST00000143535 - NO_TRANSLATION retained_intron ENSMUSG00000034023 Fancd2 ENSMUST00000101051 - NO_TRANSLATION retained_intron ENSMUSG00000034023 Fancd2 ENSMUST00000142453 - NO_TRANSLATION retained_intron ENSMUSG00000034023 Fancd2 ENSMUST00000123738 ENSMUSP00000122091 TRANSLATION protein_coding start/stop - 3 246.0 0.0 4.42 0.0 388.4 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000034023 Fancd2 ENSMUST00000129462 ENSMUSP00000145220 TRANSLATION nonsense_mediated_decay start - 3 84.0 0.0 1.0 0.0 90.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062905 Vmn1r32 ENSMUST00000079584 ENSMUSP00000078536 TRANSLATION protein_coding - CCDS20211.1 1 302.0 0.0 0.0 0.4 183.8 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062905 Vmn1r32 ENSMUST00000227014 ENSMUSP00000153723 TRANSLATION protein_coding - CCDS20211.1 - 302.0 0.0 0.0 0.4 183.8 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030228 Pik3c2g ENSMUST00000187069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030228 Pik3c2g ENSMUST00000187448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030228 Pik3c2g ENSMUST00000190962 ENSMUSP00000141141 TRANSLATION protein_coding - - 1 401.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.3742 - 0.0 PRINCIPAL:1 ENSMUSG00000030228 Pik3c2g ENSMUST00000191013 - NO_TRANSLATION retained_intron ENSMUSG00000030228 Pik3c2g ENSMUST00000187223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030228 Pik3c2g ENSMUST00000185968 ENSMUSP00000140368 TRANSLATION protein_coding stop - 5 402.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1487 - -2.0 MINOR ENSMUSG00000030228 Pik3c2g ENSMUST00000111868 ENSMUSP00000107499 TRANSLATION protein_coding start - 1 1082.0 17.0 11.552 0.0 394.5 0.0 -4,-7 0.4337 - -2.0 MINOR ENSMUSG00000030228 Pik3c2g ENSMUST00000191591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030228 Pik3c2g ENSMUST00000186585 ENSMUSP00000159446 TRANSLATION protein_coding stop - 5 402.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1487 - -2.0 MINOR ENSMUSG00000030228 Pik3c2g ENSMUST00000188066 ENSMUSP00000140123 TRANSLATION protein_coding stop - 3 200.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030228 Pik3c2g ENSMUST00000218528 ENSMUSP00000151281 TRANSLATION protein_coding start - 5 903.0 17.0 11.42 0.0 353.1 0.0 -4,-6 0.1524 - -2.0 MINOR ENSMUSG00000030228 Pik3c2g ENSMUST00000189374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030228 Pik3c2g ENSMUST00000032353 ENSMUSP00000032353 TRANSLATION protein_coding - - 5 401.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.3742 - 0.0 PRINCIPAL:1 ENSMUSG00000030228 Pik3c2g ENSMUST00000187618 ENSMUSP00000141025 TRANSLATION protein_coding - - 1 401.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.3742 - 0.0 PRINCIPAL:1 ENSMUSG00000094345 Igkv14-126 ENSMUST00000103310 ENSMUSP00000100111 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.2 0.0 58.5 0.0 2,-2 0.8234 1 -2.0 PRINCIPAL:1 ENSMUSG00000030109 Slc6a12 ENSMUST00000032200 ENSMUSP00000032200 TRANSLATION protein_coding - CCDS39616.1 1 628.0 0.0 13.615 0.1 798.3 16.0 -4,-7 0.4142 2 12.0 MINOR ENSMUSG00000030109 Slc6a12 ENSMUST00000168295 ENSMUSP00000129389 TRANSLATION protein_coding stop - 5 63.0 0.0 1.0 0.0 39.2 1.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030109 Slc6a12 ENSMUST00000163771 ENSMUSP00000127779 TRANSLATION nonsense_mediated_decay start - 5 130.0 0.0 3.33 0.0 205.9 5.0 0,-4 0.0049 - -2.0 MINOR ENSMUSG00000030109 Slc6a12 ENSMUST00000171008 ENSMUSP00000126708 TRANSLATION protein_coding - - 5 557.0 0.0 12.615 0.0 748.1 14.0 -4,-5 0.0549 2 6.99 MINOR ENSMUSG00000030109 Slc6a12 ENSMUST00000170582 - NO_TRANSLATION retained_intron ENSMUSG00000030109 Slc6a12 ENSMUST00000165456 ENSMUSP00000130715 TRANSLATION nonsense_mediated_decay start - 5 81.0 0.0 1.0 0.0 60.7 2.0 0,-4 0.0034 - -2.0 MINOR ENSMUSG00000030109 Slc6a12 ENSMUST00000171874 - NO_TRANSLATION retained_intron ENSMUSG00000030109 Slc6a12 ENSMUST00000166390 ENSMUSP00000128217 TRANSLATION nonsense_mediated_decay - - 5 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030109 Slc6a12 ENSMUST00000170339 - NO_TRANSLATION retained_intron ENSMUSG00000030109 Slc6a12 ENSMUST00000166457 ENSMUSP00000126937 TRANSLATION protein_coding - - 1 614.0 0.0 13.615 6.9 798.3 16.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000032712 Resf1 ENSMUST00000189932 ENSMUSP00000140026 TRANSLATION protein_coding - CCDS20717.1 1 1521.0 0.0 0.0 0.0 1334.9 0.0 -4,-5 1.0 18 0.0 PRINCIPAL:2 ENSMUSG00000032712 Resf1 ENSMUST00000189837 ENSMUSP00000139660 TRANSLATION protein_coding - - 1 1519.0 0.0 0.0 0.0 1325.1 0.0 -4,-5 0.6514 18 0.0 ALTERNATIVE:2 ENSMUSG00000032712 Resf1 ENSMUST00000046689 ENSMUSP00000041180 TRANSLATION protein_coding - CCDS20717.1 1 1521.0 0.0 0.0 0.0 1334.9 0.0 -4,-5 1.0 18 0.0 PRINCIPAL:2 ENSMUSG00000032712 Resf1 ENSMUST00000187881 ENSMUSP00000140491 TRANSLATION protein_coding stop - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032712 Resf1 ENSMUST00000190785 ENSMUSP00000139624 TRANSLATION protein_coding stop - 1 1173.0 0.0 0.0 0.0 838.9 0.0 -4,-5 0.0747 13 -2.0 MINOR ENSMUSG00000032712 Resf1 ENSMUST00000185930 ENSMUSP00000139593 TRANSLATION protein_coding stop - 3 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0336 - -2.0 MINOR ENSMUSG00000032712 Resf1 ENSMUST00000130664 ENSMUSP00000115573 TRANSLATION protein_coding stop - 1 404.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.003 4 -2.0 MINOR ENSMUSG00000032712 Resf1 ENSMUST00000137983 - NO_TRANSLATION retained_intron ENSMUSG00000032712 Resf1 ENSMUST00000100765 ENSMUSP00000098328 TRANSLATION protein_coding - CCDS20717.1 1 1521.0 0.0 0.0 0.0 1334.9 0.0 -4,-5 1.0 18 0.0 PRINCIPAL:2 ENSMUSG00000032712 Resf1 ENSMUST00000127680 ENSMUSP00000120770 TRANSLATION protein_coding stop - 3 170.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032712 Resf1 ENSMUST00000203348 - NO_TRANSLATION retained_intron ENSMUSG00000029836 Cbx3 ENSMUST00000114445 ENSMUSP00000110088 TRANSLATION protein_coding - - 5 71.0 0.0 1.06534 0.0 26.8 0.0 -4,-5 0.0 2 0.402 MINOR ENSMUSG00000029836 Cbx3 ENSMUST00000203404 - NO_TRANSLATION retained_intron ENSMUSG00000029836 Cbx3 ENSMUST00000094623 ENSMUSP00000110091 TRANSLATION protein_coding - CCDS20135.1 1 183.0 0.0 3.86534 19.8 162.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029836 Cbx3 ENSMUST00000114446 ENSMUSP00000110089 TRANSLATION protein_coding - CCDS20135.1 5 183.0 0.0 3.86534 19.8 162.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029836 Cbx3 ENSMUST00000141711 ENSMUSP00000121370 TRANSLATION protein_coding stop - 5 110.0 0.0 1.86534 0.0 61.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000029836 Cbx3 ENSMUST00000153699 - NO_TRANSLATION retained_intron ENSMUSG00000029836 Cbx3 ENSMUST00000156463 - NO_TRANSLATION retained_intron ENSMUSG00000029836 Cbx3 ENSMUST00000031862 ENSMUSP00000031862 TRANSLATION protein_coding - CCDS20135.1 1 183.0 0.0 3.86534 19.8 162.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000029676 Pot1a ENSMUST00000136089 - NO_TRANSLATION retained_intron ENSMUSG00000029676 Pot1a ENSMUST00000156985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029676 Pot1a ENSMUST00000115329 - NO_TRANSLATION retained_intron ENSMUSG00000029676 Pot1a ENSMUST00000134339 - NO_TRANSLATION retained_intron ENSMUSG00000029676 Pot1a ENSMUST00000151186 - NO_TRANSLATION retained_intron ENSMUSG00000029676 Pot1a ENSMUST00000115330 ENSMUSP00000110986 TRANSLATION protein_coding - CCDS39442.1 1 640.0 0.0 12.1 6.6 246.8 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000029676 Pot1a ENSMUST00000147970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029676 Pot1a ENSMUST00000166445 ENSMUSP00000131928 TRANSLATION protein_coding - CCDS39442.1 5 640.0 0.0 12.1 6.6 246.8 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000029676 Pot1a ENSMUST00000115327 ENSMUSP00000110982 TRANSLATION protein_coding - - 1 325.0 0.0 4.95 0.0 246.8 0.0 -4,-5 0.009 6 6.0 MINOR ENSMUSG00000038236 Hoxa7 ENSMUST00000150041 ENSMUSP00000140519 TRANSLATION protein_coding stop - 5 77.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000038236 Hoxa7 ENSMUST00000140316 ENSMUSP00000138790 TRANSLATION protein_coding - - 3 182.0 0.0 0.2 0.0 0.0 0.0 -4,-7 0.0 - 0.528 MINOR ENSMUSG00000038236 Hoxa7 ENSMUST00000048715 ENSMUSP00000048648 TRANSLATION protein_coding - CCDS20145.1 1 229.0 0.0 2.28 0.1 75.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038236 Hoxa7 ENSMUST00000134367 ENSMUSP00000134610 TRANSLATION protein_coding - - 5 156.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000038236 Hoxa7 ENSMUST00000153280 ENSMUSP00000134641 TRANSLATION nonsense_mediated_decay - - 1 85.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000047420 Fam180a ENSMUST00000051176 ENSMUSP00000051206 TRANSLATION protein_coding - CCDS20001.1 1 173.0 0.0 1.4 13.8 191.4 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000068551 Zfp467 ENSMUST00000114560 ENSMUSP00000110207 TRANSLATION protein_coding - CCDS51764.1 1 594.0 48.0 0.6 3.7 219.4 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000068551 Zfp467 ENSMUST00000140198 - NO_TRANSLATION retained_intron ENSMUSG00000068551 Zfp467 ENSMUST00000114558 ENSMUSP00000110205 TRANSLATION protein_coding - CCDS51765.1 1 111.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0278 1 0.0 MINOR ENSMUSG00000068551 Zfp467 ENSMUST00000114556 ENSMUSP00000110203 TRANSLATION protein_coding - - 1 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000068551 Zfp467 ENSMUST00000141449 ENSMUSP00000138291 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068551 Zfp467 ENSMUST00000101443 ENSMUSP00000098986 TRANSLATION protein_coding - CCDS51763.1 1 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0278 1 0.0 MINOR ENSMUSG00000068551 Zfp467 ENSMUST00000114564 ENSMUSP00000110211 TRANSLATION protein_coding - - 2 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000068551 Zfp467 ENSMUST00000114563 ENSMUSP00000110210 TRANSLATION protein_coding - - 5 111.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000068551 Zfp467 ENSMUST00000114561 ENSMUSP00000110208 TRANSLATION protein_coding - CCDS51764.1 1 594.0 48.0 0.6 3.7 219.4 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000068551 Zfp467 ENSMUST00000114559 ENSMUSP00000110206 TRANSLATION protein_coding - CCDS51765.1 1 111.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0278 1 0.0 MINOR ENSMUSG00000068551 Zfp467 ENSMUST00000114566 ENSMUSP00000110213 TRANSLATION protein_coding - CCDS51763.1 3 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0278 1 0.0 MINOR ENSMUSG00000030219 Erp27 ENSMUST00000162243 - NO_TRANSLATION retained_intron ENSMUSG00000030219 Erp27 ENSMUST00000032343 ENSMUSP00000032343 TRANSLATION protein_coding - CCDS20660.1 1 272.0 0.0 5.5 6.2 140.6 0.0 4,-1 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000030219 Erp27 ENSMUST00000162755 - NO_TRANSLATION retained_intron ENSMUSG00000107478 Gm45234 ENSMUST00000129411 ENSMUSP00000115407 TRANSLATION nonsense_mediated_decay,RT - CCDS20526.1 2 1175.0 0.0 0.0 0.3 787.2 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000030077 Chl1 ENSMUST00000204321 ENSMUSP00000144725 TRANSLATION protein_coding stop - 3 152.0 0.0 2.05 0.0 40.8 0.0 3,-2 0.0 3 -2.0 MINOR ENSMUSG00000030077 Chl1 ENSMUST00000066905 ENSMUSP00000063933 TRANSLATION protein_coding - CCDS39582.1 1 1209.0 0.0 14.26 10.0 475.7 2.0 3,-2 1.0 28 14.502 PRINCIPAL:1 ENSMUSG00000030077 Chl1 ENSMUST00000203912 ENSMUSP00000145026 TRANSLATION protein_coding - - 1 1150.0 0.0 14.51 0.0 407.3 2.0 3,-2 0.1592 27 7.896 MINOR ENSMUSG00000030077 Chl1 ENSMUST00000205098 ENSMUSP00000144739 TRANSLATION protein_coding - - 1 428.0 0.0 3.81 0.0 210.5 2.0 -4,-5 0.0004 8 0.0 MINOR ENSMUSG00000030077 Chl1 ENSMUST00000203489 - NO_TRANSLATION retained_intron ENSMUSG00000030077 Chl1 ENSMUST00000203830 ENSMUSP00000144758 TRANSLATION protein_coding - CCDS39582.1 1 1209.0 0.0 14.26 10.0 475.7 2.0 3,-2 1.0 28 14.502 PRINCIPAL:1 ENSMUSG00000030204 Ddx47 ENSMUST00000205055 ENSMUSP00000145463 TRANSLATION protein_coding stop - 5 180.0 14.0 4.5 0.0 77.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000030204 Ddx47 ENSMUST00000032326 ENSMUSP00000032326 TRANSLATION protein_coding - CCDS20643.1 1 455.0 16.0 11.41 8.1 271.2 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000030204 Ddx47 ENSMUST00000204646 ENSMUSP00000145232 TRANSLATION protein_coding start/stop - 5 380.0 16.0 10.33 0.0 178.7 0.0 -4,-5 0.0017 9 -2.0 MINOR ENSMUSG00000030204 Ddx47 ENSMUST00000154558 ENSMUSP00000119231 TRANSLATION protein_coding start/stop - 5 360.0 16.0 9.91 0.0 237.2 0.0 -4,-5 0.0024 9 -2.0 MINOR ENSMUSG00000030204 Ddx47 ENSMUST00000155277 - NO_TRANSLATION retained_intron ENSMUSG00000030204 Ddx47 ENSMUST00000205244 ENSMUSP00000145139 TRANSLATION protein_coding stop - 5 196.0 8.0 5.448 0.0 78.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030204 Ddx47 ENSMUST00000134549 - NO_TRANSLATION retained_intron ENSMUSG00000030204 Ddx47 ENSMUST00000155698 - NO_TRANSLATION retained_intron ENSMUSG00000030204 Ddx47 ENSMUST00000123022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030204 Ddx47 ENSMUST00000155022 ENSMUSP00000144959 TRANSLATION protein_coding start - 2 62.0 0.0 2.0 0.0 67.1 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000030204 Ddx47 ENSMUST00000131719 - NO_TRANSLATION retained_intron ENSMUSG00000030204 Ddx47 ENSMUST00000130851 ENSMUSP00000115183 TRANSLATION protein_coding stop - 3 138.0 1.0 4.08 0.0 41.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033726 Emx1 ENSMUST00000045942 ENSMUSP00000046026 TRANSLATION protein_coding - CCDS20290.1 1 257.0 0.0 1.8 2.8 76.7 0.0 -4,-6 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000033726 Emx1 ENSMUST00000173919 - NO_TRANSLATION retained_intron ENSMUSG00000023274 Cd4 ENSMUST00000145818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023274 Cd4 ENSMUST00000151594 - NO_TRANSLATION retained_intron ENSMUSG00000023274 Cd4 ENSMUST00000145977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023274 Cd4 ENSMUST00000130378 - NO_TRANSLATION retained_intron ENSMUSG00000023274 Cd4 ENSMUST00000024044 ENSMUSP00000024044 TRANSLATION protein_coding - CCDS20535.1 1 457.0 0.0 6.68 0.1 454.0 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000032652 Crebl2 ENSMUST00000145643 - NO_TRANSLATION retained_intron ENSMUSG00000032652 Crebl2 ENSMUST00000046303 ENSMUSP00000035304 TRANSLATION protein_coding - CCDS20640.1 1 123.0 0.0 2.0 19.8 33.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032652 Crebl2 ENSMUST00000203742 - NO_TRANSLATION retained_intron ENSMUSG00000032652 Crebl2 ENSMUST00000111937 ENSMUSP00000107568 TRANSLATION protein_coding - - 3 84.0 0.0 1.165 0.1 31.7 0.0 -4,-5 0.0202 - 9.144 MINOR ENSMUSG00000051124 Gimap9 ENSMUST00000147936 ENSMUSP00000122830 TRANSLATION protein_coding start - 3 138.0 18.0 1.0 0.0 196.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000051124 Gimap9 ENSMUST00000054050 ENSMUSP00000050330 TRANSLATION protein_coding - CCDS20109.1 1 291.0 22.0 2.264 6.3 268.4 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000076548 Igkv4-69 ENSMUST00000103349 ENSMUSP00000100150 TRANSLATION IG_V_gene stop - - 116.0 0.0 1.0 0.0 57.7 0.0 0,-3 0.7904 - -2.0 PRINCIPAL:1 ENSMUSG00000038022 Mindy4 ENSMUST00000203225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038022 Mindy4 ENSMUST00000204842 ENSMUSP00000145151 TRANSLATION protein_coding - CCDS85054.1 1 600.0 0.0 0.0 0.0 136.3 0.0 -4,-5 0.0437 8 0.0 MINOR ENSMUSG00000038022 Mindy4 ENSMUST00000053094 ENSMUSP00000061221 TRANSLATION protein_coding - CCDS51782.1 1 744.0 0.0 0.0 0.0 467.2 0.0 -4,-5 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000059908 Mug1 ENSMUST00000032228 ENSMUSP00000032228 TRANSLATION protein_coding - CCDS39618.1 1 1476.0 2.0 25.268 0.0 707.2 0.0 3,-2 1.0 32 14.0 PRINCIPAL:1 ENSMUSG00000059908 Mug1 ENSMUST00000148563 - NO_TRANSLATION retained_intron ENSMUSG00000059908 Mug1 ENSMUST00000204485 - NO_TRANSLATION retained_intron ENSMUSG00000059908 Mug1 ENSMUST00000204943 - NO_TRANSLATION retained_intron ENSMUSG00000059908 Mug1 ENSMUST00000204210 - NO_TRANSLATION retained_intron ENSMUSG00000047102 Tas2r139 ENSMUST00000057686 ENSMUSP00000062919 TRANSLATION protein_coding - CCDS20061.1 - 319.0 0.0 0.0 1.6 210.8 0.0 -3,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000067543 Prb1a ENSMUST00000087853 ENSMUSP00000085159 TRANSLATION protein_coding - CCDS20614.1 1 504.0 0.0 0.0 0.0 216.3 0.0 3,-1 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000063810 Alms1 ENSMUST00000202809 - NO_TRANSLATION retained_intron ENSMUSG00000063810 Alms1 ENSMUST00000201244 - NO_TRANSLATION retained_intron ENSMUSG00000063810 Alms1 ENSMUST00000213058 ENSMUSP00000148796 TRANSLATION protein_coding - - 5 3720.0 0.0 0.0 0.0 133.4 0.0 -4,-5 0.3017 21 2.0 ALTERNATIVE:2 ENSMUSG00000063810 Alms1 ENSMUST00000201221 - NO_TRANSLATION retained_intron ENSMUSG00000063810 Alms1 ENSMUST00000072018 ENSMUSP00000071904 TRANSLATION protein_coding - CCDS20298.1 1 3251.0 0.0 0.0 0.0 133.4 0.0 -4,-5 1.0 19 2.0 PRINCIPAL:2 ENSMUSG00000061653 Vmn1r46 ENSMUST00000205088 ENSMUSP00000144888 TRANSLATION protein_coding - CCDS20348.1 2 309.0 0.0 0.0 0.1 430.4 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061653 Vmn1r46 ENSMUST00000226715 ENSMUSP00000154054 TRANSLATION protein_coding - CCDS20348.1 - 309.0 0.0 0.0 0.1 430.4 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061653 Vmn1r46 ENSMUST00000228231 - NO_TRANSLATION retained_intron ENSMUSG00000061653 Vmn1r46 ENSMUST00000075797 ENSMUSP00000075197 TRANSLATION protein_coding - CCDS20348.1 - 309.0 0.0 0.0 0.1 430.4 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061653 Vmn1r46 ENSMUST00000228401 ENSMUSP00000154175 TRANSLATION protein_coding - CCDS20348.1 - 309.0 0.0 0.0 0.1 430.4 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000073155 Stmp1 ENSMUST00000152147 ENSMUSP00000158958 TRANSLATION protein_coding - - 1 47.0 0.0 1.41 34.7 70.2 0.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073155 Stmp1 ENSMUST00000136110 - NO_TRANSLATION retained_intron ENSMUSG00000073155 Stmp1 ENSMUST00000130875 ENSMUSP00000159124 TRANSLATION protein_coding - - 1 32.0 0.0 1.08 0.0 45.2 0.0 -4,-5 0.0 - 8.46 MINOR ENSMUSG00000067541 A630073D07Rik ENSMUST00000205081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067541 A630073D07Rik ENSMUST00000203888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067541 A630073D07Rik ENSMUST00000091791 ENSMUSP00000089395 TRANSLATION protein_coding - CCDS51932.1 3 100.0 0.0 0.0 0.0 34.4 0.0 4,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000056215 Lrguk ENSMUST00000228187 ENSMUSP00000153993 TRANSLATION protein_coding - - - 1340.0 9.0 13.0 0.0 143.7 0.0 -4,-1 0.4184 1 14.0 ALTERNATIVE:2 ENSMUSG00000056215 Lrguk ENSMUST00000070189 ENSMUSP00000065146 TRANSLATION protein_coding - CCDS51745.1 1 820.0 9.0 13.0 1.1 143.7 0.0 -4,-1 1.0 1 15.0 PRINCIPAL:2 ENSMUSG00000056215 Lrguk ENSMUST00000240538 ENSMUSP00000159470 TRANSLATION protein_coding - - - 1280.0 9.0 11.25 0.0 143.7 0.0 -4,-1 0.2626 1 10.502 MINOR ENSMUSG00000056215 Lrguk ENSMUST00000141078 ENSMUSP00000117680 TRANSLATION protein_coding start - 3 72.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000056215 Lrguk ENSMUST00000101564 ENSMUSP00000099100 TRANSLATION protein_coding - - 1 202.0 0.0 2.75 0.0 0.0 0.0 -4,-1 0.0 1 0.0 MINOR ENSMUSG00000035357 Pdzrn3 ENSMUST00000144505 - NO_TRANSLATION retained_intron ENSMUSG00000035357 Pdzrn3 ENSMUST00000239140 ENSMUSP00000158931 TRANSLATION protein_coding stop - - 504.0 0.0 4.35 0.0 48.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000035357 Pdzrn3 ENSMUST00000151175 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035357 Pdzrn3 ENSMUST00000124884 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035357 Pdzrn3 ENSMUST00000075994 ENSMUSP00000075376 TRANSLATION protein_coding - CCDS20392.1 1 1063.0 12.0 6.6 5.7 144.5 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000030159 Clec1b ENSMUST00000112081 ENSMUSP00000107712 TRANSLATION protein_coding - CCDS57452.1 1 197.0 0.0 4.625 2.2 69.1 0.0 -4,-5 0.2038 4 10.503 MINOR ENSMUSG00000030159 Clec1b ENSMUST00000133061 - NO_TRANSLATION retained_intron ENSMUSG00000030159 Clec1b ENSMUST00000112079 ENSMUSP00000107710 TRANSLATION protein_coding - CCDS57453.1 1 83.0 0.0 1.375 0.1 0.0 0.0 -4,-5 0.0159 1 0.0 MINOR ENSMUSG00000030159 Clec1b ENSMUST00000032262 ENSMUSP00000032262 TRANSLATION protein_coding - CCDS20586.1 1 229.0 0.0 5.625 8.2 69.1 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000095338 Igkv3-9 ENSMUST00000103398 ENSMUSP00000100199 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.1 67.1 0.0 4,-1 0.8219 - -2.0 PRINCIPAL:1 ENSMUSG00000038203 Hoxa13 ENSMUST00000147595 ENSMUSP00000125221 TRANSLATION protein_coding - - 5 386.0 0.0 1.0 0.0 139.7 0.0 -4,-7 0.7931 - 12.0 PRINCIPAL:1 ENSMUSG00000042742 Bmt2 ENSMUST00000045235 ENSMUSP00000040578 TRANSLATION protein_coding - CCDS51723.1 1 403.0 0.0 0.0 13.4 0.0 0.0 -4,-7 1.0 1 4.0 PRINCIPAL:1 ENSMUSG00000042742 Bmt2 ENSMUST00000203078 ENSMUSP00000144704 TRANSLATION protein_coding - - 1 204.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0239 1 0.0 MINOR ENSMUSG00000076539 Igkv4-81 ENSMUST00000103340 ENSMUSP00000100141 TRANSLATION IG_V_gene start/stop - - 96.0 0.0 1.0 0.0 58.7 0.0 -4,-5 0.0225 1 -2.0 ALTERNATIVE:2 ENSMUSG00000076539 Igkv4-81 ENSMUST00000197966 ENSMUSP00000142950 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.0 58.7 0.0 -1,-4 0.7899 1 -2.0 PRINCIPAL:5 ENSMUSG00000042079 Hnrnpf ENSMUST00000163168 ENSMUSP00000130023 TRANSLATION protein_coding - CCDS20467.1 1 415.0 0.0 4.0 11.0 159.2 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000042079 Hnrnpf ENSMUST00000180020 ENSMUSP00000137632 TRANSLATION protein_coding - CCDS20467.1 1 415.0 0.0 4.0 11.0 159.2 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000042079 Hnrnpf ENSMUST00000167182 ENSMUSP00000126817 TRANSLATION protein_coding - CCDS20467.1 3 415.0 0.0 4.0 11.0 159.2 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000042079 Hnrnpf ENSMUST00000035493 ENSMUSP00000045048 TRANSLATION protein_coding - CCDS20467.1 1 415.0 0.0 4.0 11.0 159.2 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000042079 Hnrnpf ENSMUST00000179478 ENSMUSP00000136436 TRANSLATION protein_coding stop - 2 208.0 0.0 3.0 0.0 46.1 0.0 -4,-5 0.0047 6 -2.0 MINOR ENSMUSG00000042079 Hnrnpf ENSMUST00000177918 ENSMUSP00000137091 TRANSLATION protein_coding stop - 5 70.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042079 Hnrnpf ENSMUST00000179224 ENSMUSP00000136751 TRANSLATION protein_coding stop - 2 14.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042079 Hnrnpf ENSMUST00000177570 ENSMUSP00000136162 TRANSLATION protein_coding stop - 1 232.0 0.0 3.0 0.0 46.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000042079 Hnrnpf ENSMUST00000180341 ENSMUSP00000136700 TRANSLATION protein_coding - CCDS20467.1 - 415.0 0.0 4.0 11.0 159.2 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000042079 Hnrnpf ENSMUST00000177743 ENSMUSP00000136477 TRANSLATION protein_coding stop - 3 31.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039958 Etfbkmt ENSMUST00000126406 ENSMUSP00000115172 TRANSLATION protein_coding stop - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 - -2.0 MINOR ENSMUSG00000039958 Etfbkmt ENSMUST00000134306 ENSMUSP00000118701 TRANSLATION protein_coding stop - 5 160.0 10.0 2.95 0.0 23.6 0.0 -4,-2 0.0003 2 -2.0 MINOR ENSMUSG00000039958 Etfbkmt ENSMUST00000111547 ENSMUSP00000107171 TRANSLATION protein_coding - - 1 150.0 0.0 1.2 0.0 0.0 0.0 -4,-2 0.0 - 0.498 MINOR ENSMUSG00000039958 Etfbkmt ENSMUST00000111548 ENSMUSP00000107173 TRANSLATION protein_coding - - 1 150.0 0.0 1.2 0.0 0.0 0.0 -4,-2 0.0 - 0.498 MINOR ENSMUSG00000039958 Etfbkmt ENSMUST00000147934 ENSMUSP00000144830 TRANSLATION protein_coding - CCDS85191.1 1 128.0 12.0 2.0 3.0 0.0 0.0 -4,-5 0.3372 1 4.146 MINOR ENSMUSG00000039958 Etfbkmt ENSMUST00000111551 ENSMUSP00000107176 TRANSLATION protein_coding - CCDS20715.1 1 255.0 19.0 3.95 3.8 33.6 0.0 -4,-2 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000039958 Etfbkmt ENSMUST00000166416 ENSMUSP00000126521 TRANSLATION protein_coding stop - 3 165.0 12.0 2.95 0.0 23.6 0.0 -4,-2 0.0003 3 -2.0 MINOR ENSMUSG00000039958 Etfbkmt ENSMUST00000047531 ENSMUSP00000042102 TRANSLATION protein_coding - CCDS20715.1 1 255.0 19.0 3.95 3.8 33.6 0.0 -4,-2 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000039958 Etfbkmt ENSMUST00000179873 ENSMUSP00000136167 TRANSLATION protein_coding - CCDS20715.1 3 255.0 19.0 3.95 3.8 33.6 0.0 -4,-2 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000093376 Vmn1r23 ENSMUST00000175817 ENSMUSP00000135676 TRANSLATION protein_coding - CCDS39498.1 - 302.0 0.0 0.0 0.4 188.7 0.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096051 Vmn1r40 ENSMUST00000075158 ENSMUSP00000074655 TRANSLATION protein_coding - CCDS20346.1 - 310.0 0.0 0.0 0.1 467.2 9.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096051 Vmn1r40 ENSMUST00000226925 ENSMUSP00000153836 TRANSLATION protein_coding - CCDS20346.1 - 310.0 0.0 0.0 0.1 467.2 9.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096051 Vmn1r40 ENSMUST00000228642 ENSMUSP00000154581 TRANSLATION protein_coding - CCDS20346.1 - 310.0 0.0 0.0 0.1 467.2 9.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096051 Vmn1r40 ENSMUST00000227669 ENSMUSP00000154466 TRANSLATION protein_coding - - - 127.0 0.0 0.0 0.0 207.8 6.0 -2,-5 0.0067 - 0.0 MINOR ENSMUSG00000096051 Vmn1r40 ENSMUST00000228485 ENSMUSP00000153784 TRANSLATION protein_coding - - - 127.0 0.0 0.0 0.0 207.8 6.0 -2,-5 0.0067 - 0.0 MINOR ENSMUSG00000076555 Igkv4-57-1 ENSMUST00000103356 ENSMUSP00000100157 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.0 0.0 60.5 0.0 2,-2 0.8264 - -2.0 PRINCIPAL:1 ENSMUSG00000000184 Ccnd2 ENSMUST00000201637 ENSMUSP00000144245 TRANSLATION protein_coding - - 1 156.0 0.0 2.25 0.0 114.5 0.0 -4,-5 0.0 - 2.79 MINOR ENSMUSG00000000184 Ccnd2 ENSMUST00000201857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000184 Ccnd2 ENSMUST00000000188 ENSMUSP00000000188 TRANSLATION protein_coding - CCDS20564.1 1 289.0 0.0 4.24 36.2 201.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000000184 Ccnd2 ENSMUST00000201985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000184 Ccnd2 ENSMUST00000201902 ENSMUSP00000144006 TRANSLATION protein_coding stop - 5 189.0 0.0 2.8 0.0 127.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000184 Ccnd2 ENSMUST00000201066 ENSMUSP00000144095 TRANSLATION protein_coding - - 2 156.0 0.0 2.25 0.0 114.5 0.0 -4,-5 0.0 - 2.79 MINOR ENSMUSG00000000184 Ccnd2 ENSMUST00000201564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000184 Ccnd2 ENSMUST00000202363 - NO_TRANSLATION retained_intron ENSMUSG00000076572 Igkv18-36 ENSMUST00000200160 ENSMUSP00000142735 TRANSLATION IG_V_gene stop - - 113.0 0.0 1.0 0.0 59.0 0.0 3,-2 0.8234 - -2.0 PRINCIPAL:1 ENSMUSG00000093755 Vmn1r39 ENSMUST00000228919 ENSMUSP00000154432 TRANSLATION protein_coding - - - 268.0 0.0 0.0 0.0 169.0 5.0 -2,-5 0.0417 - 0.666 MINOR ENSMUSG00000093755 Vmn1r39 ENSMUST00000227285 ENSMUSP00000154639 TRANSLATION protein_coding - - - 268.0 0.0 0.0 0.0 169.0 5.0 -2,-5 0.0417 - 0.666 MINOR ENSMUSG00000093755 Vmn1r39 ENSMUST00000227555 ENSMUSP00000153835 TRANSLATION protein_coding - CCDS51803.1 - 305.0 0.0 0.0 0.4 175.4 6.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000093755 Vmn1r39 ENSMUST00000228651 ENSMUSP00000153888 TRANSLATION protein_coding - - - 268.0 0.0 0.0 0.0 169.0 5.0 -2,-5 0.0417 - 0.666 MINOR ENSMUSG00000093755 Vmn1r39 ENSMUST00000226217 ENSMUSP00000154221 TRANSLATION protein_coding - CCDS51803.1 - 305.0 0.0 0.0 0.4 175.4 6.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000093755 Vmn1r39 ENSMUST00000228862 ENSMUSP00000153741 TRANSLATION protein_coding - CCDS51803.1 - 305.0 0.0 0.0 0.4 175.4 6.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000093755 Vmn1r39 ENSMUST00000228008 ENSMUSP00000154778 TRANSLATION protein_coding - - - 268.0 0.0 0.0 0.0 169.0 5.0 -2,-5 0.0417 - 0.666 MINOR ENSMUSG00000093755 Vmn1r39 ENSMUST00000226783 ENSMUSP00000154558 TRANSLATION protein_coding - CCDS51803.1 - 305.0 0.0 0.0 0.4 175.4 6.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000033963 Fancd2os ENSMUST00000125139 ENSMUSP00000121804 TRANSLATION nonsense_mediated_decay - CCDS20427.1 1 178.0 0.0 0.2 13.5 313.6 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000033963 Fancd2os ENSMUST00000035870 ENSMUSP00000035316 TRANSLATION protein_coding - CCDS20427.1 1 178.0 0.0 0.2 13.5 313.6 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042389 Tsen2 ENSMUST00000123359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042389 Tsen2 ENSMUST00000040234 ENSMUSP00000038211 TRANSLATION protein_coding - CCDS20440.1 1 460.0 0.0 4.875 0.4 111.9 0.0 -4,-7 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000042389 Tsen2 ENSMUST00000130425 ENSMUSP00000145431 TRANSLATION protein_coding - - 3 103.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 2 0.0 MINOR ENSMUSG00000042389 Tsen2 ENSMUST00000143520 - NO_TRANSLATION retained_intron ENSMUSG00000042389 Tsen2 ENSMUST00000138200 - NO_TRANSLATION retained_intron ENSMUSG00000000399 Ndufa9 ENSMUST00000088194 ENSMUSP00000085523 TRANSLATION protein_coding - - 5 373.0 25.0 9.25 0.1 42.5 0.0 -2,-5 0.1391 15 18.0 MINOR ENSMUSG00000000399 Ndufa9 ENSMUST00000205002 ENSMUSP00000144904 TRANSLATION protein_coding - CCDS20557.1 1 377.0 25.0 9.25 16.2 42.5 0.0 -4,0 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000000399 Ndufa9 ENSMUST00000200890 - NO_TRANSLATION retained_intron ENSMUSG00000030016 Zfp638 ENSMUST00000204580 - NO_TRANSLATION retained_intron ENSMUSG00000030016 Zfp638 ENSMUST00000204823 - NO_TRANSLATION retained_intron ENSMUSG00000030016 Zfp638 ENSMUST00000203891 ENSMUSP00000144939 TRANSLATION protein_coding - - 5 1239.0 4.0 4.15 0.0 0.0 0.0 -4,0 0.2698 23 10.0 ALTERNATIVE:2 ENSMUSG00000030016 Zfp638 ENSMUST00000203808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030016 Zfp638 ENSMUST00000205166 ENSMUSP00000144762 TRANSLATION protein_coding start/stop - 3 266.0 0.0 2.6 0.0 0.0 0.0 -4,-5 0.0098 7 -2.0 MINOR ENSMUSG00000030016 Zfp638 ENSMUST00000203806 - NO_TRANSLATION retained_intron ENSMUSG00000030016 Zfp638 ENSMUST00000113835 ENSMUSP00000109466 TRANSLATION protein_coding - CCDS51823.1 1 1271.0 4.0 4.15 0.0 0.0 0.0 -4,0 0.5042 23 10.0 ALTERNATIVE:2 ENSMUSG00000030016 Zfp638 ENSMUST00000203273 ENSMUSP00000145241 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0505 - -2.0 MINOR ENSMUSG00000030016 Zfp638 ENSMUST00000204110 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030016 Zfp638 ENSMUST00000204713 - NO_TRANSLATION retained_intron ENSMUSG00000030016 Zfp638 ENSMUST00000203324 ENSMUSP00000145124 TRANSLATION protein_coding - - 5 1273.0 4.0 4.15 0.0 0.0 0.0 -4,0 0.2673 23 10.0 ALTERNATIVE:2 ENSMUSG00000030016 Zfp638 ENSMUST00000204120 - NO_TRANSLATION retained_intron ENSMUSG00000030016 Zfp638 ENSMUST00000203534 - NO_TRANSLATION retained_intron ENSMUSG00000030016 Zfp638 ENSMUST00000204378 - NO_TRANSLATION retained_intron ENSMUSG00000030016 Zfp638 ENSMUST00000204415 ENSMUSP00000145513 TRANSLATION protein_coding stop - 2 185.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.036 - -2.0 MINOR ENSMUSG00000030016 Zfp638 ENSMUST00000204202 ENSMUSP00000145170 TRANSLATION protein_coding stop - 1 832.0 4.0 2.55 0.0 0.0 0.0 -4,0 0.0582 14 -2.0 MINOR ENSMUSG00000030016 Zfp638 ENSMUST00000203455 ENSMUSP00000145047 TRANSLATION protein_coding stop - 5 891.0 4.0 3.15 0.0 0.0 0.0 -4,0 0.0679 16 -2.0 MINOR ENSMUSG00000030016 Zfp638 ENSMUST00000204751 ENSMUSP00000144989 TRANSLATION protein_coding - CCDS20288.1 1 1926.0 4.0 4.15 0.0 0.0 0.0 -4,0 1.0 31 10.0 PRINCIPAL:2 ENSMUSG00000030016 Zfp638 ENSMUST00000203056 - NO_TRANSLATION retained_intron ENSMUSG00000030016 Zfp638 ENSMUST00000203481 - NO_TRANSLATION retained_intron ENSMUSG00000030016 Zfp638 ENSMUST00000032088 ENSMUSP00000032088 TRANSLATION protein_coding - - 5 1960.0 4.0 4.15 0.1 0.0 0.0 -4,0 0.3555 30 10.0 ALTERNATIVE:2 ENSMUSG00000049939 Lrrc4 ENSMUST00000062304 ENSMUSP00000062158 TRANSLATION protein_coding - CCDS39448.1 - 652.0 2.0 1.0 14.5 159.9 2.0 0,-4 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000049939 Lrrc4 ENSMUST00000171353 ENSMUSP00000129497 TRANSLATION protein_coding - - 3 177.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000033420 Antxr1 ENSMUST00000042025 ENSMUSP00000045634 TRANSLATION protein_coding - CCDS20318.1 1 562.0 4.0 9.75 0.3 385.9 1.0 0,-3 1.0 4 12.0 PRINCIPAL:2 ENSMUSG00000033420 Antxr1 ENSMUST00000203131 ENSMUSP00000144853 TRANSLATION nonsense_mediated_decay start - 1 138.0 2.0 4.25 0.0 57.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000033420 Antxr1 ENSMUST00000205033 ENSMUSP00000144911 TRANSLATION protein_coding - - 1 500.0 4.0 9.75 0.0 368.4 1.0 0,-3 0.1025 4 11.778 ALTERNATIVE:2 ENSMUSG00000033420 Antxr1 ENSMUST00000205089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033420 Antxr1 ENSMUST00000204805 ENSMUSP00000145105 TRANSLATION protein_coding - - 5 521.0 4.0 9.75 0.0 366.2 1.0 0,-3 0.0969 4 11.556 MINOR ENSMUSG00000033420 Antxr1 ENSMUST00000203563 - NO_TRANSLATION retained_intron ENSMUSG00000029777 Gars ENSMUST00000205258 - NO_TRANSLATION retained_intron ENSMUSG00000029777 Gars ENSMUST00000203334 - NO_TRANSLATION retained_intron ENSMUSG00000029777 Gars ENSMUST00000003572 ENSMUSP00000003572 TRANSLATION protein_coding - CCDS39492.1 1 729.0 16.0 14.5 0.4 156.6 0.0 -2,2 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000061769 Klra6 ENSMUST00000074056 ENSMUSP00000073700 TRANSLATION protein_coding - CCDS20597.1 1 266.0 3.0 4.6 0.1 228.3 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094433 Igkv5-43 ENSMUST00000103368 ENSMUSP00000100169 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 57.0 0.0 3,-1 0.8251 - -2.0 PRINCIPAL:1 ENSMUSG00000029999 Tgfa ENSMUST00000194449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029999 Tgfa ENSMUST00000192058 ENSMUSP00000141395 TRANSLATION protein_coding stop - 3 98.0 2.0 1.0 0.0 0.0 0.0 4,-1 0.0512 - -2.0 MINOR ENSMUSG00000029999 Tgfa ENSMUST00000193710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029999 Tgfa ENSMUST00000032066 ENSMUSP00000032066 TRANSLATION protein_coding - CCDS51832.1 1 159.0 4.0 1.6 13.2 0.0 0.0 4,-1 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000071341 Egr4 ENSMUST00000095759 ENSMUSP00000093433 TRANSLATION protein_coding - CCDS20297.1 1 478.0 12.0 0.2 2.5 54.2 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000061210 Or2a57 ENSMUST00000215569 ENSMUSP00000151056 TRANSLATION protein_coding - CCDS20092.1 5 321.0 0.0 1.0 0.1 209.4 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000061210 Or2a57 ENSMUST00000078057 ENSMUSP00000077204 TRANSLATION protein_coding - CCDS20092.1 - 321.0 0.0 1.0 0.1 209.4 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037172 Dennd11 ENSMUST00000101492 ENSMUSP00000099031 TRANSLATION protein_coding - - 1 455.0 0.0 0.6015 5.7 254.0 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000037172 Dennd11 ENSMUST00000201712 ENSMUSP00000143916 TRANSLATION protein_coding start/stop - 3 137.0 0.0 0.0 0.0 104.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037172 Dennd11 ENSMUST00000200994 - NO_TRANSLATION retained_intron ENSMUSG00000037172 Dennd11 ENSMUST00000039008 ENSMUSP00000045103 TRANSLATION protein_coding - - 1 391.0 0.0 0.532 0.0 254.0 0.0 -4,-5 0.0352 6 11.304 MINOR ENSMUSG00000049112 Oxtr ENSMUST00000053306 ENSMUSP00000051132 TRANSLATION protein_coding - CCDS39588.1 1 388.0 0.0 1.26 2.3 154.0 0.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000049112 Oxtr ENSMUST00000204027 ENSMUSP00000145300 TRANSLATION protein_coding - - 1 75.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 1 2.856 MINOR ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000204885 - NO_TRANSLATION retained_intron ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000203253 ENSMUSP00000144736 TRANSLATION protein_coding start/stop - 3 155.0 0.0 3.33 0.0 117.7 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000203220 ENSMUSP00000145374 TRANSLATION protein_coding - CCDS51774.1 1 341.0 0.0 5.33 12.5 169.9 0.0 -4,-5 1.0 26 13.998 PRINCIPAL:1 ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000204188 ENSMUSP00000145245 TRANSLATION protein_coding - CCDS51773.1 5 301.0 0.0 5.0 5.0 169.9 0.0 -4,-5 0.3898 25 11.382 MINOR ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000204902 - NO_TRANSLATION retained_intron ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000203655 - NO_TRANSLATION retained_intron ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000205204 - NO_TRANSLATION retained_intron ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000204090 - NO_TRANSLATION retained_intron ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000204158 ENSMUSP00000145383 TRANSLATION nonsense_mediated_decay - CCDS51773.1 1 301.0 0.0 5.0 5.0 169.9 0.0 -4,-5 0.3898 - -2.0 MINOR ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000069949 ENSMUSP00000067491 TRANSLATION protein_coding - CCDS51773.1 1 301.0 0.0 5.0 5.0 169.9 0.0 -4,-5 0.3898 25 11.382 MINOR ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000203954 ENSMUSP00000145028 TRANSLATION nonsense_mediated_decay - - 5 353.0 0.0 5.83 0.0 169.9 0.0 -4,-5 0.0362 27 -2.0 MINOR ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000114459 ENSMUSP00000110103 TRANSLATION protein_coding - - 5 353.0 0.0 5.83 0.0 169.9 0.0 -4,-5 0.0362 27 12.0 MINOR ENSMUSG00000004980 Hnrnpa2b1 ENSMUST00000090002 ENSMUSP00000087453 TRANSLATION protein_coding - CCDS51774.1 5 341.0 0.0 5.33 12.5 169.9 0.0 -4,-5 1.0 26 13.998 PRINCIPAL:1 ENSMUSG00000030042 Pole4 ENSMUST00000141138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030042 Pole4 ENSMUST00000161309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030042 Pole4 ENSMUST00000095786 ENSMUSP00000093462 TRANSLATION protein_coding - CCDS39524.1 1 118.0 0.0 2.05 5.0 51.6 0.0 -4,-5 0.9909 1 10.0 PRINCIPAL:4 ENSMUSG00000030042 Pole4 ENSMUST00000140281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030042 Pole4 ENSMUST00000160281 ENSMUSP00000124357 TRANSLATION protein_coding - - 1 119.0 0.0 2.05 5.0 51.6 0.0 -4,-5 0.8692 1 10.0 ALTERNATIVE:1 ENSMUSG00000047115 Fam221a ENSMUST00000142950 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047115 Fam221a ENSMUST00000203182 - NO_TRANSLATION retained_intron ENSMUSG00000047115 Fam221a ENSMUST00000134786 ENSMUSP00000114554 TRANSLATION protein_coding stop - 3 63.0 0.0 1.5 0.0 104.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000047115 Fam221a ENSMUST00000121903 ENSMUSP00000113242 TRANSLATION protein_coding - CCDS51769.1 1 258.0 0.0 5.75 0.7 324.1 0.0 -4,-5 0.2932 3 12.0 MINOR ENSMUSG00000047115 Fam221a ENSMUST00000060561 ENSMUSP00000050237 TRANSLATION protein_coding - CCDS20126.1 1 301.0 0.0 5.75 15.8 324.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000047115 Fam221a ENSMUST00000141910 - NO_TRANSLATION retained_intron ENSMUSG00000029863 Casp2 ENSMUST00000132398 - NO_TRANSLATION retained_intron ENSMUSG00000029863 Casp2 ENSMUST00000152893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029863 Casp2 ENSMUST00000203089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029863 Casp2 ENSMUST00000141727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029863 Casp2 ENSMUST00000139930 - NO_TRANSLATION retained_intron ENSMUSG00000029863 Casp2 ENSMUST00000144821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029863 Casp2 ENSMUST00000031895 ENSMUSP00000031895 TRANSLATION protein_coding - CCDS20064.1 1 452.0 4.0 6.4 8.1 219.2 0.0 -4,0 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000029863 Casp2 ENSMUST00000132246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029863 Casp2 ENSMUST00000141669 - NO_TRANSLATION retained_intron ENSMUSG00000029863 Casp2 ENSMUST00000156829 ENSMUSP00000121184 TRANSLATION nonsense_mediated_decay - - 5 343.0 4.0 4.0 4.9 157.7 0.0 -4,0 0.1769 7 -2.0 MINOR ENSMUSG00000034245 Hdac11 ENSMUST00000127768 - NO_TRANSLATION retained_intron ENSMUSG00000034245 Hdac11 ENSMUST00000041736 ENSMUSP00000043828 TRANSLATION protein_coding - CCDS20366.1 1 347.0 3.0 8.08 7.8 165.9 0.0 -4,-7 1.0 8 17.0 PRINCIPAL:1 ENSMUSG00000034245 Hdac11 ENSMUST00000143621 ENSMUSP00000121624 TRANSLATION protein_coding stop - 5 172.0 0.0 3.83 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000034245 Hdac11 ENSMUST00000154389 - NO_TRANSLATION retained_intron ENSMUSG00000034245 Hdac11 ENSMUST00000204776 ENSMUSP00000145014 TRANSLATION nonsense_mediated_decay start - 1 26.0 0.0 0.83 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034245 Hdac11 ENSMUST00000155007 ENSMUSP00000120923 TRANSLATION protein_coding start - 5 264.0 0.0 3.33 0.0 0.0 0.0 -4,-7 0.0024 3 -2.0 MINOR ENSMUSG00000034245 Hdac11 ENSMUST00000134154 - NO_TRANSLATION retained_intron ENSMUSG00000076501 Igkv2-137 ENSMUST00000103302 ENSMUSP00000100103 TRANSLATION IG_V_gene stop - - 120.0 0.0 1.25 0.0 58.9 0.0 4,-1 0.8221 2 -2.0 PRINCIPAL:1 ENSMUSG00000051343 Rab11fip5 ENSMUST00000060837 ENSMUSP00000058305 TRANSLATION protein_coding - CCDS20292.1 1 645.0 0.0 0.6 1.3 77.2 0.0 -4,-7 1.0 21 9.0 PRINCIPAL:2 ENSMUSG00000051343 Rab11fip5 ENSMUST00000204504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051343 Rab11fip5 ENSMUST00000204087 ENSMUSP00000145402 TRANSLATION protein_coding - CCDS85083.1 1 1318.0 0.0 0.6 0.0 77.2 0.0 -4,-7 0.7106 29 8.0 ALTERNATIVE:2 ENSMUSG00000067767 Clec4b2 ENSMUST00000088455 ENSMUSP00000085802 TRANSLATION protein_coding - CCDS20511.1 1 208.0 8.0 5.0 2.4 73.6 0.0 -1,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000030317 Timp4 ENSMUST00000032462 ENSMUSP00000032462 TRANSLATION protein_coding - CCDS20438.1 1 224.0 0.0 4.6 9.3 230.2 0.0 3,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000030317 Timp4 ENSMUST00000205131 ENSMUSP00000144785 TRANSLATION protein_coding - - 1 175.0 0.0 3.85 0.0 177.6 0.0 3,-2 0.0009 3 7.344 MINOR ENSMUSG00000030037 Mrpl53 ENSMUST00000113938 ENSMUSP00000109571 TRANSLATION protein_coding - CCDS20272.1 1 118.0 0.0 3.0 4.4 58.2 0.0 -4,-1 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000030037 Mrpl53 ENSMUST00000129656 - NO_TRANSLATION retained_intron ENSMUSG00000043421 Hilpda ENSMUST00000115289 ENSMUSP00000110944 TRANSLATION protein_coding - CCDS39450.1 3 64.0 0.0 0.8 6.7 143.7 1.0 -1,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043421 Hilpda ENSMUST00000054445 ENSMUSP00000060791 TRANSLATION protein_coding - CCDS39450.1 1 64.0 0.0 0.8 6.7 143.7 1.0 -1,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000076564 Igkv12-46 ENSMUST00000103365 ENSMUSP00000100166 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 58.6 0.0 3,-2 0.8234 2 -2.0 PRINCIPAL:1 ENSMUSG00000060816 Vmn1r52 ENSMUST00000227100 ENSMUSP00000154539 TRANSLATION protein_coding - - - 109.0 0.0 0.0 0.0 88.1 5.0 -4,0 0.0066 - 0.0 MINOR ENSMUSG00000060816 Vmn1r52 ENSMUST00000226520 ENSMUSP00000154082 TRANSLATION protein_coding - CCDS20353.1 - 309.0 0.0 0.0 0.1 305.1 10.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060816 Vmn1r52 ENSMUST00000079832 ENSMUSP00000078760 TRANSLATION protein_coding - CCDS20353.1 - 309.0 0.0 0.0 0.1 305.1 10.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060816 Vmn1r52 ENSMUST00000228394 ENSMUSP00000153951 TRANSLATION protein_coding - CCDS20353.1 - 309.0 0.0 0.0 0.1 305.1 10.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060816 Vmn1r52 ENSMUST00000228385 ENSMUSP00000154336 TRANSLATION protein_coding - - - 121.0 0.0 0.0 0.0 125.4 7.0 -4,-6 0.0066 - 0.0 MINOR ENSMUSG00000060816 Vmn1r52 ENSMUST00000227578 ENSMUSP00000154194 TRANSLATION protein_coding - - - 130.0 0.0 0.0 0.0 122.4 7.0 -2,-5 0.0066 - 0.0 MINOR ENSMUSG00000060816 Vmn1r52 ENSMUST00000228665 ENSMUSP00000154275 TRANSLATION protein_coding - CCDS20353.1 - 309.0 0.0 0.0 0.1 305.1 10.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060816 Vmn1r52 ENSMUST00000227893 ENSMUSP00000154024 TRANSLATION protein_coding - CCDS20353.1 - 309.0 0.0 0.0 0.1 305.1 10.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047515 BC049715 ENSMUST00000205058 - NO_TRANSLATION retained_intron ENSMUSG00000047515 BC049715 ENSMUST00000163640 ENSMUSP00000133266 TRANSLATION protein_coding - CCDS39685.1 - 247.0 0.0 0.0 3.7 313.4 0.0 -4,-5 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000047515 BC049715 ENSMUST00000052702 ENSMUSP00000049512 TRANSLATION protein_coding - CCDS39685.1 1 247.0 0.0 0.0 3.7 313.4 0.0 -4,-5 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000047515 BC049715 ENSMUST00000204086 ENSMUSP00000145317 TRANSLATION protein_coding stop - 5 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047515 BC049715 ENSMUST00000203499 ENSMUSP00000145015 TRANSLATION protein_coding - CCDS39685.1 5 247.0 0.0 0.0 3.7 313.4 0.0 -4,-5 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000009281 Rarres2 ENSMUST00000009425 ENSMUSP00000009425 TRANSLATION protein_coding - CCDS85040.1 2 163.0 0.0 0.0 5.8 0.0 0.0 2,-2 0.8582 4 2.0 ALTERNATIVE:1 ENSMUSG00000009281 Rarres2 ENSMUST00000204267 ENSMUSP00000144793 TRANSLATION protein_coding - CCDS20105.1 1 162.0 0.0 0.0 5.8 0.0 0.0 2,-2 1.0 4 2.0 PRINCIPAL:4 ENSMUSG00000009281 Rarres2 ENSMUST00000203541 - NO_TRANSLATION retained_intron ENSMUSG00000009281 Rarres2 ENSMUST00000204182 ENSMUSP00000145257 TRANSLATION protein_coding - CCDS85040.1 5 163.0 0.0 0.0 5.8 0.0 0.0 2,-2 0.8582 4 2.0 ALTERNATIVE:1 ENSMUSG00000009281 Rarres2 ENSMUST00000204930 ENSMUSP00000144799 TRANSLATION protein_coding - CCDS20105.1 2 162.0 0.0 0.0 5.8 0.0 0.0 2,-2 1.0 4 2.0 PRINCIPAL:4 ENSMUSG00000057754 Tas2r106 ENSMUST00000076756 ENSMUSP00000076043 TRANSLATION protein_coding - CCDS20610.1 - 308.0 0.0 0.0 4.6 290.7 0.0 -1,-4 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000048693 Or2a51 ENSMUST00000215565 ENSMUSP00000150935 TRANSLATION protein_coding - CCDS20090.1 5 313.0 0.0 1.0 11.4 205.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048693 Or2a51 ENSMUST00000058118 ENSMUSP00000058912 TRANSLATION protein_coding - CCDS20090.1 - 313.0 0.0 1.0 11.4 205.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000013736 Trnt1 ENSMUST00000147084 - NO_TRANSLATION retained_intron ENSMUSG00000013736 Trnt1 ENSMUST00000113249 ENSMUSP00000108875 TRANSLATION protein_coding - CCDS20397.1 1 434.0 11.0 8.05 8.5 118.6 0.0 -4,0 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000013736 Trnt1 ENSMUST00000205163 ENSMUSP00000144943 TRANSLATION protein_coding stop - 2 71.0 2.0 1.55 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000013736 Trnt1 ENSMUST00000113248 ENSMUSP00000108874 TRANSLATION protein_coding - CCDS20397.1 1 434.0 11.0 8.05 8.5 118.6 0.0 -4,0 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000013736 Trnt1 ENSMUST00000057578 ENSMUSP00000060900 TRANSLATION protein_coding - CCDS20397.1 1 434.0 11.0 8.05 8.5 118.6 0.0 -4,0 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000013736 Trnt1 ENSMUST00000113247 ENSMUSP00000108873 TRANSLATION protein_coding - CCDS57443.1 1 215.0 8.0 5.15 0.0 118.6 0.0 -4,0 0.0434 7 10.2 MINOR ENSMUSG00000013736 Trnt1 ENSMUST00000154026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013736 Trnt1 ENSMUST00000204782 ENSMUSP00000144850 TRANSLATION protein_coding stop - 3 134.0 2.0 3.3 0.0 63.1 0.0 -4,0 0.0 6 -2.0 MINOR ENSMUSG00000094145 Vmn2r20 ENSMUST00000172199 ENSMUSP00000129145 TRANSLATION protein_coding - CCDS51898.1 5 853.0 5.0 2.52 0.8 398.2 0.0 2,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000094145 Vmn2r20 ENSMUST00000232807 ENSMUSP00000156851 TRANSLATION nonsense_mediated_decay - - - 562.0 5.0 2.12 0.0 177.7 0.0 2,-2 0.0038 - -2.0 MINOR ENSMUSG00000079262 Slco1a6 ENSMUST00000174455 ENSMUSP00000134565 TRANSLATION protein_coding stop - 3 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.022 - -2.0 MINOR ENSMUSG00000079262 Slco1a6 ENSMUST00000172984 - NO_TRANSLATION retained_intron ENSMUSG00000079262 Slco1a6 ENSMUST00000173877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079262 Slco1a6 ENSMUST00000111827 ENSMUSP00000107458 TRANSLATION protein_coding - CCDS39693.1 1 670.0 0.0 0.0 10.3 609.5 0.0 -2,-4 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000092035 Peg10 ENSMUST00000176551 ENSMUSP00000135076 TRANSLATION protein_coding - - 2 604.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0067 4 0.0 MINOR ENSMUSG00000092035 Peg10 ENSMUST00000176204 ENSMUSP00000134963 TRANSLATION protein_coding - CCDS57407.1 2 376.0 4.0 0.0 0.0 62.2 0.0 -4,-6 0.9994 3 10.0 PRINCIPAL:1 ENSMUSG00000072778 Vmn2r27 ENSMUST00000233936 ENSMUSP00000156733 TRANSLATION protein_coding - - - 601.0 5.0 2.0 0.0 148.7 0.0 2,-2 0.0038 - 10.172 MINOR ENSMUSG00000072778 Vmn2r27 ENSMUST00000100968 ENSMUSP00000098528 TRANSLATION protein_coding - CCDS51904.1 5 857.0 5.0 2.32 0.1 350.1 0.0 2,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000004654 Ghrhr ENSMUST00000203241 ENSMUSP00000145224 TRANSLATION protein_coding - - 1 386.0 0.0 8.1 0.0 281.0 7.0 2,-3 0.008 - 4.47 MINOR ENSMUSG00000004654 Ghrhr ENSMUST00000204988 - NO_TRANSLATION retained_intron ENSMUSG00000004654 Ghrhr ENSMUST00000063578 ENSMUSP00000068120 TRANSLATION protein_coding - CCDS20165.1 1 423.0 0.0 10.1 8.4 339.8 9.0 2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029762 Akr1b8 ENSMUST00000133370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029762 Akr1b8 ENSMUST00000038406 ENSMUSP00000040244 TRANSLATION protein_coding - CCDS19991.1 1 316.0 29.0 8.25 30.6 202.9 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000034387 Ssu2 ENSMUST00000123254 - NO_TRANSLATION retained_intron ENSMUSG00000034387 Ssu2 ENSMUST00000238755 ENSMUSP00000158856 TRANSLATION protein_coding - - - 375.0 12.0 8.25 8.2 0.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034387 Ssu2 ENSMUST00000143134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034387 Ssu2 ENSMUST00000060847 ENSMUSP00000052328 TRANSLATION protein_coding - CCDS20405.1 1 340.0 12.0 7.25 0.0 0.0 0.0 -4,-5 0.0678 - 10.002 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000128837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029772 Ahcyl2 ENSMUST00000134438 ENSMUSP00000118790 TRANSLATION protein_coding stop - 5 238.0 6.0 4.63 0.0 225.3 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000149816 - NO_TRANSLATION retained_intron ENSMUSG00000029772 Ahcyl2 ENSMUST00000064872 ENSMUSP00000067638 TRANSLATION protein_coding - CCDS85024.1 5 508.0 42.0 13.13 14.1 498.0 0.0 -4,-5 0.9854 4 17.336 ALTERNATIVE:1 ENSMUSG00000029772 Ahcyl2 ENSMUST00000128927 ENSMUSP00000135633 TRANSLATION protein_coding stop - 5 223.0 6.0 4.63 0.0 225.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000136031 ENSMUSP00000135362 TRANSLATION protein_coding stop - 5 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000202115 - NO_TRANSLATION retained_intron ENSMUSG00000029772 Ahcyl2 ENSMUST00000102995 ENSMUSP00000100060 TRANSLATION protein_coding - CCDS57416.1 5 612.0 42.0 13.13 10.1 498.0 0.0 -4,-5 0.733 6 16.32 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000115238 ENSMUSP00000110893 TRANSLATION protein_coding - CCDS51738.1 1 508.0 42.0 13.13 16.7 498.0 0.0 -4,-6 1.0 5 18.0 PRINCIPAL:3 ENSMUSG00000029772 Ahcyl2 ENSMUST00000143707 - NO_TRANSLATION retained_intron ENSMUSG00000029772 Ahcyl2 ENSMUST00000138205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029772 Ahcyl2 ENSMUST00000201282 - NO_TRANSLATION retained_intron ENSMUSG00000029772 Ahcyl2 ENSMUST00000115242 ENSMUSP00000110897 TRANSLATION protein_coding - CCDS19966.3 1 613.0 42.0 13.13 10.1 498.0 0.0 -4,-5 0.7315 5 16.32 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000150365 ENSMUSP00000134827 TRANSLATION nonsense_mediated_decay - - 2 160.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000135396 - NO_TRANSLATION retained_intron ENSMUSG00000029772 Ahcyl2 ENSMUST00000125911 ENSMUSP00000135518 TRANSLATION protein_coding - - 5 404.0 42.0 12.08 3.7 461.7 0.0 -4,-1 0.0746 4 12.588 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000176265 ENSMUSP00000135714 TRANSLATION protein_coding stop - 5 75.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000141304 - NO_TRANSLATION retained_intron ENSMUSG00000029772 Ahcyl2 ENSMUST00000154079 ENSMUSP00000115093 TRANSLATION protein_coding stop - 3 181.0 5.0 3.38 0.0 167.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000152581 ENSMUSP00000135386 TRANSLATION protein_coding stop - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029772 Ahcyl2 ENSMUST00000201020 - NO_TRANSLATION retained_intron ENSMUSG00000029772 Ahcyl2 ENSMUST00000176693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029772 Ahcyl2 ENSMUST00000143091 ENSMUSP00000144873 TRANSLATION protein_coding stop - 3 115.0 6.0 3.58 0.0 185.7 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000040627 Aicda ENSMUST00000160685 ENSMUSP00000125093 TRANSLATION protein_coding - - 1 60.0 0.0 1.0 0.0 50.4 0.0 -4,-5 0.0 - 2.274 MINOR ENSMUSG00000040627 Aicda ENSMUST00000043301 ENSMUSP00000040524 TRANSLATION protein_coding - CCDS20497.1 1 198.0 5.0 2.64 16.8 213.7 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000030335 Mrpl51 ENSMUST00000144380 - NO_TRANSLATION retained_intron ENSMUSG00000030335 Mrpl51 ENSMUST00000032485 ENSMUSP00000032485 TRANSLATION protein_coding - CCDS20545.1 1 128.0 0.0 2.0 13.4 119.5 0.0 -3,1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000030335 Mrpl51 ENSMUST00000136804 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048284 Tas2r126 ENSMUST00000059534 ENSMUSP00000056581 TRANSLATION protein_coding - CCDS20070.1 - 308.0 0.0 0.0 5.7 319.2 0.0 1,-3 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000030365 Clec2i ENSMUST00000159080 - NO_TRANSLATION retained_intron ENSMUSG00000030365 Clec2i ENSMUST00000032519 ENSMUSP00000032519 TRANSLATION protein_coding - CCDS51920.1 1 217.0 0.0 3.5 0.0 45.1 1.0 -4,-6 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000030365 Clec2i ENSMUST00000159866 ENSMUSP00000123804 TRANSLATION protein_coding - CCDS71844.1 1 221.0 0.0 3.5 0.0 45.1 1.0 -4,-6 0.436 - 6.0 ALTERNATIVE:2 ENSMUSG00000030365 Clec2i ENSMUST00000160867 ENSMUSP00000145115 TRANSLATION protein_coding - CCDS85166.1 1 156.0 0.0 3.5 0.0 45.4 0.0 -1,-4 0.2745 - 6.0 ALTERNATIVE:2 ENSMUSG00000030365 Clec2i ENSMUST00000162666 ENSMUSP00000124910 TRANSLATION protein_coding - CCDS80618.1 1 246.0 0.0 3.5 0.0 45.1 1.0 -4,-5 0.2642 - 6.0 ALTERNATIVE:2 ENSMUSG00000076471 Trbv14 ENSMUST00000103272 ENSMUSP00000100088 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.0 0.0 53.1 0.0 3,-2 0.824 - -2.0 PRINCIPAL:1 ENSMUSG00000038507 Parp12 ENSMUST00000038398 ENSMUSP00000039704 TRANSLATION protein_coding - CCDS20019.1 1 711.0 20.0 4.15 0.0 216.7 0.0 -3,-6 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000038507 Parp12 ENSMUST00000129916 - NO_TRANSLATION retained_intron ENSMUSG00000038784 Cnot4 ENSMUST00000202666 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038784 Cnot4 ENSMUST00000200954 - NO_TRANSLATION retained_intron ENSMUSG00000038784 Cnot4 ENSMUST00000202417 ENSMUSP00000144409 TRANSLATION protein_coding - CCDS80520.1 1 572.0 9.0 4.35 10.3 52.5 0.0 -4,-5 0.4828 10 15.556 MINOR ENSMUSG00000038784 Cnot4 ENSMUST00000114993 ENSMUSP00000110645 TRANSLATION protein_coding - CCDS51747.1 1 710.0 9.0 4.35 24.9 52.5 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:4 ENSMUSG00000038784 Cnot4 ENSMUST00000114989 ENSMUSP00000110640 TRANSLATION protein_coding - CCDS51746.1 1 642.0 9.0 4.35 24.2 52.5 0.0 -4,-5 0.9194 11 17.884 ALTERNATIVE:1 ENSMUSG00000038784 Cnot4 ENSMUST00000044163 ENSMUSP00000044137 TRANSLATION protein_coding - CCDS19999.1 1 575.0 9.0 4.35 10.3 52.5 0.0 -4,-5 0.4832 10 15.556 MINOR ENSMUSG00000038784 Cnot4 ENSMUST00000200743 - NO_TRANSLATION retained_intron ENSMUSG00000038784 Cnot4 ENSMUST00000202143 ENSMUSP00000144352 TRANSLATION protein_coding - CCDS80519.1 1 639.0 9.0 4.35 24.2 52.5 0.0 -4,-5 0.92 11 17.884 ALTERNATIVE:1 ENSMUSG00000025889 Snca ENSMUST00000163779 ENSMUSP00000126067 TRANSLATION protein_coding - CCDS20201.1 1 140.0 0.0 3.58 23.4 179.3 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000025889 Snca ENSMUST00000114268 ENSMUSP00000109907 TRANSLATION protein_coding - CCDS20201.1 1 140.0 0.0 3.58 23.4 179.3 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000025889 Snca ENSMUST00000203177 - NO_TRANSLATION retained_intron ENSMUSG00000025889 Snca ENSMUST00000204586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094491 Igkv1-133 ENSMUST00000103304 ENSMUSP00000100105 TRANSLATION IG_V_gene stop - - 120.0 0.0 1.1 0.0 57.7 0.0 4,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000076541 Igkv4-79 ENSMUST00000103342 ENSMUSP00000100143 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.0 62.6 0.0 0,-3 0.7874 - -2.0 PRINCIPAL:1 ENSMUSG00000042541 Sem1 ENSMUST00000041111 ENSMUSP00000040741 TRANSLATION protein_coding - CCDS39422.1 1 70.0 0.0 2.25 28.2 81.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042541 Sem1 ENSMUST00000205180 - NO_TRANSLATION retained_intron ENSMUSG00000001517 Foxm1 ENSMUST00000125456 - NO_TRANSLATION retained_intron ENSMUSG00000001517 Foxm1 ENSMUST00000073316 ENSMUSP00000073041 TRANSLATION protein_coding - CCDS20570.1 1 757.0 0.0 2.75 9.2 104.4 0.0 -4,-1 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000001517 Foxm1 ENSMUST00000136395 - NO_TRANSLATION retained_intron ENSMUSG00000001517 Foxm1 ENSMUST00000123988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001517 Foxm1 ENSMUST00000112148 ENSMUSP00000107776 TRANSLATION protein_coding - - 5 742.0 0.0 2.55 6.9 104.4 0.0 -4,-1 0.7231 2 13.722 MINOR ENSMUSG00000001517 Foxm1 ENSMUST00000203040 ENSMUSP00000145305 TRANSLATION protein_coding start/stop - 3 402.0 0.0 2.2 0.0 104.4 0.0 -4,-5 0.0087 - -2.0 MINOR ENSMUSG00000001517 Foxm1 ENSMUST00000153423 - NO_TRANSLATION retained_intron ENSMUSG00000001517 Foxm1 ENSMUST00000203258 ENSMUSP00000145473 TRANSLATION protein_coding start/stop - 3 214.0 0.0 2.0 0.0 104.4 0.0 -4,-5 0.0044 - -2.0 MINOR ENSMUSG00000030344 Akap3 ENSMUST00000095440 ENSMUSP00000093091 TRANSLATION protein_coding - CCDS20558.1 1 864.0 0.0 1.0 0.1 1358.4 0.0 -4,-5 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000030344 Akap3 ENSMUST00000202574 ENSMUSP00000144405 TRANSLATION protein_coding - CCDS20558.1 5 864.0 0.0 1.0 0.1 1358.4 0.0 -4,-5 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000030344 Akap3 ENSMUST00000202878 ENSMUSP00000143794 TRANSLATION protein_coding - CCDS20558.1 1 864.0 0.0 1.0 0.1 1358.4 0.0 -4,-5 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000076496 Trbj2-5 ENSMUST00000103297 ENSMUSP00000141297 TRANSLATION TR_J_gene start/stop - - 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000058831 Opn1sw ENSMUST00000131928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058831 Opn1sw ENSMUST00000080428 ENSMUSP00000079289 TRANSLATION protein_coding - CCDS19959.1 1 346.0 7.0 5.64 13.4 144.6 6.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000058831 Opn1sw ENSMUST00000147483 ENSMUSP00000133745 TRANSLATION protein_coding - - 1 283.0 5.0 4.64 0.0 119.2 4.0 -4,-6 0.004 - 12.762 MINOR ENSMUSG00000058831 Opn1sw ENSMUST00000173653 ENSMUSP00000133534 TRANSLATION protein_coding stop - 3 61.0 2.0 1.6 0.0 28.2 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000071537 Klrg2 ENSMUST00000202245 ENSMUSP00000144581 TRANSLATION nonsense_mediated_decay - - 1 239.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000071537 Klrg2 ENSMUST00000201345 ENSMUSP00000143835 TRANSLATION protein_coding - - 5 200.0 0.0 2.34 0.0 40.5 0.0 -4,-7 0.0225 1 8.0 ALTERNATIVE:2 ENSMUSG00000071537 Klrg2 ENSMUST00000096030 ENSMUSP00000093732 TRANSLATION protein_coding - CCDS20016.1 1 387.0 0.0 2.34 0.1 40.5 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000068335 Dok1 ENSMUST00000089651 ENSMUSP00000087079 TRANSLATION protein_coding - CCDS20265.1 1 482.0 0.0 3.148 6.4 149.3 0.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000068335 Dok1 ENSMUST00000204900 ENSMUSP00000145347 TRANSLATION protein_coding start - 3 51.0 0.0 1.0 0.0 27.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000068335 Dok1 ENSMUST00000149918 ENSMUSP00000145318 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030004 Nat8 ENSMUST00000032073 ENSMUSP00000032073 TRANSLATION protein_coding - CCDS20301.1 1 227.0 22.0 1.0 4.5 53.6 0.0 -4,-2 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000093696 Vmn1r7 ENSMUST00000176252 ENSMUSP00000135571 TRANSLATION protein_coding - CCDS51792.1 - 311.0 0.0 0.0 0.1 196.1 0.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030105 Arl8b ENSMUST00000032196 ENSMUSP00000032196 TRANSLATION protein_coding - CCDS39586.1 1 186.0 17.0 5.83 32.3 159.7 0.0 -3,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000030105 Arl8b ENSMUST00000204483 ENSMUSP00000145035 TRANSLATION protein_coding - - 3 138.0 10.0 4.5 3.0 134.0 0.0 -4,-6 0.0145 3 9.388 MINOR ENSMUSG00000042129 Rassf4 ENSMUST00000203477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042129 Rassf4 ENSMUST00000035842 ENSMUSP00000048267 TRANSLATION protein_coding - CCDS20460.1 1 322.0 0.0 1.12 7.6 98.9 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000042129 Rassf4 ENSMUST00000204576 ENSMUSP00000145394 TRANSLATION protein_coding stop - 5 80.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000042129 Rassf4 ENSMUST00000204313 - NO_TRANSLATION retained_intron ENSMUSG00000042129 Rassf4 ENSMUST00000203634 - NO_TRANSLATION retained_intron ENSMUSG00000042129 Rassf4 ENSMUST00000203029 ENSMUSP00000144786 TRANSLATION protein_coding - - 1 303.0 0.0 1.12 0.0 85.6 0.0 -4,-5 0.0734 3 11.196 MINOR ENSMUSG00000042129 Rassf4 ENSMUST00000204203 ENSMUSP00000145076 TRANSLATION protein_coding stop - 5 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000096525 Gm2663 ENSMUST00000166306 ENSMUSP00000130465 TRANSLATION protein_coding - CCDS51756.1 1 247.0 20.0 4.0 33.9 257.9 0.0 3,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000038759 Nup205 ENSMUST00000043815 ENSMUSP00000039656 TRANSLATION protein_coding - CCDS57418.1 1 2008.0 0.0 3.413 7.5 1351.4 0.0 -4,-7 1.0 45 13.868 PRINCIPAL:1 ENSMUSG00000038759 Nup205 ENSMUST00000201374 ENSMUSP00000144126 TRANSLATION protein_coding - - 1 2061.0 0.0 3.479 0.0 1351.4 0.0 -4,0 0.3505 45 12.0 MINOR ENSMUSG00000038759 Nup205 ENSMUST00000201609 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038759 Nup205 ENSMUST00000201842 - NO_TRANSLATION retained_intron ENSMUSG00000038759 Nup205 ENSMUST00000200739 - NO_TRANSLATION retained_intron ENSMUSG00000038759 Nup205 ENSMUST00000202898 - NO_TRANSLATION retained_intron ENSMUSG00000001763 Tspan33 ENSMUST00000137925 - NO_TRANSLATION retained_intron ENSMUSG00000001763 Tspan33 ENSMUST00000046750 ENSMUSP00000045282 TRANSLATION protein_coding - CCDS19964.1 1 283.0 0.0 3.61 21.5 324.1 5.0 -4,-5 1.0 2 10.0 PRINCIPAL:4 ENSMUSG00000001763 Tspan33 ENSMUST00000115250 ENSMUSP00000110905 TRANSLATION protein_coding - CCDS80506.1 1 282.0 0.0 3.57 20.3 319.6 5.0 -4,-5 0.9468 2 9.686 ALTERNATIVE:1 ENSMUSG00000004270 Lpcat3 ENSMUST00000133797 - NO_TRANSLATION retained_intron ENSMUSG00000004270 Lpcat3 ENSMUST00000152176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004270 Lpcat3 ENSMUST00000004381 ENSMUSP00000004381 TRANSLATION protein_coding - CCDS20523.1 1 487.0 0.0 10.65 0.0 266.4 8.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000004270 Lpcat3 ENSMUST00000141069 - NO_TRANSLATION retained_intron ENSMUSG00000004270 Lpcat3 ENSMUST00000141546 - NO_TRANSLATION retained_intron ENSMUSG00000004270 Lpcat3 ENSMUST00000135516 - NO_TRANSLATION retained_intron ENSMUSG00000004270 Lpcat3 ENSMUST00000128721 ENSMUSP00000144738 TRANSLATION nonsense_mediated_decay - - 3 99.0 0.0 1.4 0.0 0.0 3.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000004270 Lpcat3 ENSMUST00000150597 - NO_TRANSLATION retained_intron ENSMUSG00000004270 Lpcat3 ENSMUST00000130020 - NO_TRANSLATION retained_intron ENSMUSG00000064177 Ghrl ENSMUST00000203588 ENSMUSP00000145514 TRANSLATION protein_coding - CCDS85126.1 1 78.0 0.0 1.0 1.4 86.1 0.0 3,-2 0.2046 3 6.142 MINOR ENSMUSG00000064177 Ghrl ENSMUST00000203363 ENSMUSP00000145366 TRANSLATION protein_coding - CCDS85128.1 1 86.0 0.0 0.0 0.0 46.9 0.0 3,-2 0.0388 1 1.0 MINOR ENSMUSG00000064177 Ghrl ENSMUST00000204533 ENSMUSP00000145046 TRANSLATION protein_coding - - 2 54.0 0.0 1.0 0.0 87.8 0.0 -4,-5 0.0256 3 6.0 MINOR ENSMUSG00000064177 Ghrl ENSMUST00000204163 ENSMUSP00000145096 TRANSLATION protein_coding - CCDS85127.1 1 116.0 0.0 1.0 6.6 157.4 0.0 3,-2 0.9259 4 10.0 ALTERNATIVE:1 ENSMUSG00000064177 Ghrl ENSMUST00000204191 - NO_TRANSLATION retained_intron ENSMUSG00000064177 Ghrl ENSMUST00000203770 ENSMUSP00000145281 TRANSLATION protein_coding - CCDS20432.1 1 117.0 0.0 1.0 6.6 161.9 0.0 3,-2 1.0 4 10.0 PRINCIPAL:4 ENSMUSG00000064177 Ghrl ENSMUST00000064993 ENSMUSP00000069567 TRANSLATION protein_coding - CCDS20432.1 1 117.0 0.0 1.0 6.6 161.9 0.0 3,-2 1.0 4 10.0 PRINCIPAL:4 ENSMUSG00000024211 Grm8 ENSMUST00000131897 ENSMUSP00000120394 TRANSLATION protein_coding stop - 1 293.0 17.0 3.0 0.0 221.6 0.0 -3,-5 0.0 5 -2.0 MINOR ENSMUSG00000024211 Grm8 ENSMUST00000090512 ENSMUSP00000087998 TRANSLATION protein_coding - CCDS80495.1 1 908.0 20.0 8.29 25.7 605.0 6.0 -3,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000024211 Grm8 ENSMUST00000202861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024211 Grm8 ENSMUST00000115323 ENSMUSP00000110978 TRANSLATION protein_coding - CCDS39443.1 1 908.0 20.0 8.29 14.6 605.0 6.0 -3,-5 0.9305 11 20.204 MINOR ENSMUSG00000024211 Grm8 ENSMUST00000132755 ENSMUSP00000118098 TRANSLATION protein_coding stop - 5 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024211 Grm8 ENSMUST00000146727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024211 Grm8 ENSMUST00000115324 ENSMUSP00000110979 TRANSLATION protein_coding - CCDS39443.1 1 908.0 20.0 8.29 14.6 605.0 6.0 -3,-5 0.9305 11 20.204 MINOR ENSMUSG00000038388 Pals2 ENSMUST00000167319 - NO_TRANSLATION retained_intron ENSMUSG00000038388 Pals2 ENSMUST00000036225 ENSMUSP00000038772 TRANSLATION protein_coding - CCDS51770.1 1 553.0 19.0 5.385 6.7 354.8 0.0 -4,-5 0.5234 20 18.952 MINOR ENSMUSG00000038388 Pals2 ENSMUST00000167628 ENSMUSP00000129355 TRANSLATION protein_coding stop - 1 315.0 0.0 2.765 0.0 181.0 0.0 -4,-5 0.0034 9 -2.0 MINOR ENSMUSG00000038388 Pals2 ENSMUST00000167063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038388 Pals2 ENSMUST00000204545 ENSMUSP00000144737 TRANSLATION protein_coding - CCDS20128.1 5 539.0 19.0 5.385 25.0 354.8 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000038388 Pals2 ENSMUST00000203415 - NO_TRANSLATION retained_intron ENSMUSG00000038388 Pals2 ENSMUST00000036236 ENSMUSP00000039314 TRANSLATION protein_coding - CCDS20128.1 1 539.0 19.0 5.385 25.0 354.8 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000038388 Pals2 ENSMUST00000171601 ENSMUSP00000129004 TRANSLATION nonsense_mediated_decay - - 3 48.0 0.0 0.0 0.0 31.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038388 Pals2 ENSMUST00000166318 ENSMUSP00000125880 TRANSLATION protein_coding - CCDS51770.1 1 553.0 19.0 5.385 6.7 354.8 0.0 -4,-5 0.5234 20 18.952 MINOR ENSMUSG00000030272 Camk1 ENSMUST00000156853 - NO_TRANSLATION retained_intron ENSMUSG00000030272 Camk1 ENSMUST00000032409 ENSMUSP00000032409 TRANSLATION protein_coding - CCDS20415.1 1 374.0 20.0 8.35 0.4 261.9 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000030272 Camk1 ENSMUST00000149497 - NO_TRANSLATION retained_intron ENSMUSG00000030272 Camk1 ENSMUST00000155543 ENSMUSP00000117749 TRANSLATION protein_coding stop - 5 162.0 12.0 4.25 0.0 153.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030272 Camk1 ENSMUST00000153067 - NO_TRANSLATION retained_intron ENSMUSG00000030272 Camk1 ENSMUST00000156512 - NO_TRANSLATION retained_intron ENSMUSG00000030275 Etnk1 ENSMUST00000204947 ENSMUSP00000145041 TRANSLATION protein_coding - - 1 373.0 15.0 5.75 0.0 207.1 0.0 -4,-5 0.0434 7 15.0 MINOR ENSMUSG00000030275 Etnk1 ENSMUST00000032413 ENSMUSP00000032413 TRANSLATION protein_coding - CCDS57468.1 1 363.0 15.0 7.25 27.5 207.1 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000030275 Etnk1 ENSMUST00000205256 ENSMUSP00000144903 TRANSLATION protein_coding - - 1 336.0 15.0 5.75 0.0 207.1 0.0 -4,-5 0.0063 7 15.0 MINOR ENSMUSG00000030275 Etnk1 ENSMUST00000203341 - NO_TRANSLATION retained_intron ENSMUSG00000023349 Clec4n ENSMUST00000024118 ENSMUSP00000024118 TRANSLATION protein_coding - CCDS20512.1 1 209.0 8.0 5.632 5.8 78.1 4.0 -3,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000023349 Clec4n ENSMUST00000117130 ENSMUSP00000113733 TRANSLATION protein_coding - CCDS51896.1 1 179.0 8.0 4.632 1.0 78.1 0.0 -4,-7 0.1583 3 16.002 MINOR ENSMUSG00000023349 Clec4n ENSMUST00000151714 ENSMUSP00000120043 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 1.432 0.0 0.0 4.0 -3,-5 0.0046 - -2.0 MINOR ENSMUSG00000023349 Clec4n ENSMUST00000205129 ENSMUSP00000145023 TRANSLATION protein_coding - - 5 89.0 0.0 2.132 0.0 0.0 4.0 -3,-5 0.0046 - 0.0 MINOR ENSMUSG00000023349 Clec4n ENSMUST00000112554 ENSMUSP00000108173 TRANSLATION protein_coding - CCDS51895.1 1 175.0 8.0 4.632 2.2 78.1 4.0 -3,-5 0.2073 3 16.502 MINOR ENSMUSG00000023349 Clec4n ENSMUST00000144840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029680 Hyal4 ENSMUST00000031691 ENSMUSP00000031691 TRANSLATION protein_coding - CCDS39441.1 1 481.0 0.0 3.0 8.1 448.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071519 Prss3 ENSMUST00000096003 ENSMUSP00000093702 TRANSLATION protein_coding - CCDS20047.1 1 246.0 17.0 4.0 33.9 272.0 0.0 4,-1 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000076483 Trbj1-1 ENSMUST00000103284 ENSMUSP00000141314 TRANSLATION TR_J_gene start/stop - - 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000094672 Vmn2r25 ENSMUST00000233160 ENSMUSP00000156973 TRANSLATION nonsense_mediated_decay - - - 445.0 5.0 0.88 0.0 112.3 0.0 0,-3 0.0007 - -2.0 MINOR ENSMUSG00000094672 Vmn2r25 ENSMUST00000162046 ENSMUSP00000124342 TRANSLATION protein_coding - CCDS51903.1 1 855.0 5.0 2.68 0.1 384.7 0.0 0,-3 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000094672 Vmn2r25 ENSMUST00000233622 ENSMUSP00000156904 TRANSLATION nonsense_mediated_decay - - - 500.0 5.0 0.88 0.0 112.3 0.0 0,-3 0.0007 - -2.0 MINOR ENSMUSG00000079543 Igkv13-85 ENSMUST00000114212 ENSMUSP00000109850 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 57.1 0.0 2,-2 0.8264 - -2.0 PRINCIPAL:1 ENSMUSG00000029669 Tspan12 ENSMUST00000120965 ENSMUSP00000113384 TRANSLATION protein_coding - - 1 257.0 0.0 2.66 2.0 56.8 9.0 -2,-5 0.0278 - 6.662 MINOR ENSMUSG00000029669 Tspan12 ENSMUST00000031678 ENSMUSP00000031678 TRANSLATION protein_coding - CCDS19935.1 1 305.0 0.0 3.26 27.2 128.3 9.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000029669 Tspan12 ENSMUST00000123116 ENSMUSP00000117820 TRANSLATION protein_coding stop - 5 204.0 0.0 3.26 0.0 108.1 7.0 -2,-5 0.0328 - -2.0 MINOR ENSMUSG00000029669 Tspan12 ENSMUST00000143531 ENSMUSP00000144717 TRANSLATION protein_coding stop - 5 28.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0048 - -2.0 MINOR ENSMUSG00000029669 Tspan12 ENSMUST00000202353 ENSMUSP00000144671 TRANSLATION protein_coding stop - - 23.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000029669 Tspan12 ENSMUST00000134635 ENSMUSP00000123475 TRANSLATION protein_coding stop - 3 132.0 0.0 2.11 0.0 59.0 7.0 -2,-5 0.0021 - -2.0 MINOR ENSMUSG00000071517 Gm10334 ENSMUST00000095999 ENSMUSP00000093698 TRANSLATION protein_coding - CCDS39468.1 1 246.0 25.0 4.0 33.9 272.3 0.0 4,-1 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000076490 Trbc1 ENSMUST00000192856 ENSMUSP00000141715 TRANSLATION TR_C_gene start - - 173.0 4.0 2.66 0.0 83.8 0.0 -4,-5 0.7392 - -2.0 PRINCIPAL:1 ENSMUSG00000034832 Tet3 ENSMUST00000056191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034832 Tet3 ENSMUST00000089622 ENSMUSP00000087049 TRANSLATION protein_coding - CCDS51820.1 5 1668.0 0.0 6.8 0.1 349.3 0.0 -4,-5 0.3793 5 10.398 MINOR ENSMUSG00000034832 Tet3 ENSMUST00000186548 ENSMUSP00000139630 TRANSLATION protein_coding - CCDS85071.1 1 1803.0 8.0 7.6 0.1 349.3 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000034832 Tet3 ENSMUST00000190295 ENSMUSP00000139679 TRANSLATION protein_coding stop - 3 141.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034832 Tet3 ENSMUST00000205921 - NO_TRANSLATION retained_intron ENSMUSG00000052419 Smim30 ENSMUST00000185361 ENSMUSP00000139650 TRANSLATION protein_coding - - 3 59.0 0.0 0.8 8.3 94.0 1.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052419 Smim30 ENSMUST00000139231 ENSMUSP00000116702 TRANSLATION protein_coding - - 1 59.0 0.0 0.8 8.3 94.0 1.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052419 Smim30 ENSMUST00000185219 ENSMUSP00000140155 TRANSLATION protein_coding - - - 59.0 0.0 0.8 8.3 94.0 1.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052419 Smim30 ENSMUST00000155856 ENSMUSP00000120110 TRANSLATION protein_coding - - 1 59.0 0.0 0.8 8.3 94.0 1.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000115199 Vmn1r15 ENSMUST00000228297 ENSMUSP00000154252 TRANSLATION protein_coding - CCDS20178.1 - 299.0 0.0 0.0 1.3 184.3 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000016487 Ppfibp1 ENSMUST00000204028 - NO_TRANSLATION retained_intron ENSMUSG00000016487 Ppfibp1 ENSMUST00000133825 - NO_TRANSLATION retained_intron ENSMUSG00000016487 Ppfibp1 ENSMUST00000149203 - NO_TRANSLATION retained_intron ENSMUSG00000016487 Ppfibp1 ENSMUST00000203730 ENSMUSP00000145088 TRANSLATION protein_coding stop - 5 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000016487 Ppfibp1 ENSMUST00000155415 ENSMUSP00000121270 TRANSLATION protein_coding start/stop - 3 254.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 9 -2.0 MINOR ENSMUSG00000016487 Ppfibp1 ENSMUST00000111623 ENSMUSP00000107250 TRANSLATION protein_coding - CCDS51958.1 1 980.0 0.0 7.25 2.1 176.9 0.0 -4,-5 0.7945 24 12.688 MINOR ENSMUSG00000016487 Ppfibp1 ENSMUST00000136837 ENSMUSP00000114340 TRANSLATION protein_coding start/stop - 3 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000016487 Ppfibp1 ENSMUST00000016631 ENSMUSP00000016631 TRANSLATION protein_coding - CCDS39715.1 1 969.0 0.0 7.25 4.2 176.9 0.0 -4,-5 1.0 24 14.0 PRINCIPAL:1 ENSMUSG00000016487 Ppfibp1 ENSMUST00000126774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016487 Ppfibp1 ENSMUST00000154221 ENSMUSP00000122515 TRANSLATION protein_coding start/stop - 5 242.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000016487 Ppfibp1 ENSMUST00000123902 - NO_TRANSLATION retained_intron ENSMUSG00000016487 Ppfibp1 ENSMUST00000204660 ENSMUSP00000144887 TRANSLATION protein_coding stop - 3 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000093861 Igkv1-110 ENSMUST00000103321 ENSMUSP00000100122 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.0 0.0 63.9 0.0 3,-2 0.8306 - -2.0 PRINCIPAL:1 ENSMUSG00000030286 Emc3 ENSMUST00000032425 ENSMUSP00000032425 TRANSLATION protein_coding - CCDS20425.1 1 261.0 0.0 3.8375 34.9 178.6 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000030286 Emc3 ENSMUST00000154605 - NO_TRANSLATION retained_intron ENSMUSG00000030286 Emc3 ENSMUST00000203526 - NO_TRANSLATION retained_intron ENSMUSG00000036390 Gadd45a ENSMUST00000126194 - NO_TRANSLATION retained_intron ENSMUSG00000036390 Gadd45a ENSMUST00000204282 ENSMUSP00000145136 TRANSLATION protein_coding - - 5 60.0 0.0 1.5 1.0 0.0 0.0 -4,-5 0.069 - 1.5 MINOR ENSMUSG00000036390 Gadd45a ENSMUST00000204369 ENSMUSP00000145432 TRANSLATION protein_coding - - 5 131.0 0.0 2.75 2.9 33.6 0.0 -4,-5 0.3793 - 8.422 MINOR ENSMUSG00000036390 Gadd45a ENSMUST00000128617 - NO_TRANSLATION retained_intron ENSMUSG00000036390 Gadd45a ENSMUST00000155041 - NO_TRANSLATION retained_intron ENSMUSG00000036390 Gadd45a ENSMUST00000151958 - NO_TRANSLATION retained_intron ENSMUSG00000036390 Gadd45a ENSMUST00000043098 ENSMUSP00000044034 TRANSLATION protein_coding - CCDS20217.1 1 165.0 0.0 3.75 0.0 58.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057103 Nat8f1 ENSMUST00000239124 ENSMUSP00000158936 TRANSLATION protein_coding - CCDS20304.2 - 232.0 22.0 2.0 0.4 50.7 1.0 -4,-7 0.278 5 12.0 ALTERNATIVE:2 ENSMUSG00000057103 Nat8f1 ENSMUST00000161198 ENSMUSP00000124488 TRANSLATION protein_coding - - 1 222.0 22.0 2.0 0.1 50.7 1.0 -4,-7 0.7714 5 12.0 PRINCIPAL:2 ENSMUSG00000057103 Nat8f1 ENSMUST00000172982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057103 Nat8f1 ENSMUST00000174369 ENSMUSP00000133475 TRANSLATION protein_coding stop - 3 105.0 0.0 1.0 0.0 0.0 1.0 -4,-7 0.003 3 -2.0 MINOR ENSMUSG00000056952 Tatdn2 ENSMUST00000089018 ENSMUSP00000086412 TRANSLATION protein_coding - CCDS20431.1 1 722.0 6.0 4.6 0.0 197.6 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:2 ENSMUSG00000056952 Tatdn2 ENSMUST00000153661 ENSMUSP00000123557 TRANSLATION protein_coding start - 3 138.0 3.0 2.0 0.0 72.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000056952 Tatdn2 ENSMUST00000204753 ENSMUSP00000145308 TRANSLATION protein_coding - CCDS85124.1 1 783.0 6.0 4.6 0.0 197.6 0.0 -4,-5 0.3131 6 14.0 ALTERNATIVE:2 ENSMUSG00000056952 Tatdn2 ENSMUST00000113022 ENSMUSP00000108645 TRANSLATION protein_coding - CCDS85124.1 1 783.0 6.0 4.6 0.0 197.6 0.0 -4,-5 0.3131 6 14.0 ALTERNATIVE:2 ENSMUSG00000056952 Tatdn2 ENSMUST00000138420 ENSMUSP00000116559 TRANSLATION protein_coding start - 3 147.0 3.0 3.0 0.0 123.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000086040 Wipf3 ENSMUST00000131043 - NO_TRANSLATION retained_intron ENSMUSG00000086040 Wipf3 ENSMUST00000172046 ENSMUSP00000132138 TRANSLATION protein_coding - CCDS51779.1 5 483.0 0.0 0.0 0.0 38.2 0.0 -4,-7 1.0 11 2.0 PRINCIPAL:2 ENSMUSG00000086040 Wipf3 ENSMUST00000163746 ENSMUSP00000132022 TRANSLATION protein_coding - CCDS51780.1 5 449.0 0.0 0.0 0.0 38.2 0.0 -4,-7 0.2587 11 2.0 ALTERNATIVE:2 ENSMUSG00000086040 Wipf3 ENSMUST00000126637 ENSMUSP00000116325 TRANSLATION protein_coding - CCDS51780.1 5 449.0 0.0 0.0 0.0 38.2 0.0 -4,-7 0.2587 11 2.0 ALTERNATIVE:2 ENSMUSG00000086040 Wipf3 ENSMUST00000128480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086040 Wipf3 ENSMUST00000132855 ENSMUSP00000120240 TRANSLATION protein_coding - CCDS51779.1 5 483.0 0.0 0.0 0.0 38.2 0.0 -4,-7 1.0 11 2.0 PRINCIPAL:2 ENSMUSG00000038210 Hoxa11 ENSMUST00000131495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038210 Hoxa11 ENSMUST00000048026 ENSMUSP00000040920 TRANSLATION protein_coding - CCDS20148.1 1 313.0 0.0 1.0 8.8 285.9 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000030107 Usp18 ENSMUST00000203250 - NO_TRANSLATION retained_intron ENSMUSG00000030107 Usp18 ENSMUST00000032198 ENSMUSP00000032198 TRANSLATION protein_coding - CCDS20489.1 1 368.0 4.0 7.25 7.0 140.0 0.0 -4,-7 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000030107 Usp18 ENSMUST00000204710 ENSMUSP00000145285 TRANSLATION protein_coding start - 3 60.0 0.0 1.5 0.0 48.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030107 Usp18 ENSMUST00000204926 - NO_TRANSLATION retained_intron ENSMUSG00000041671 Pyroxd1 ENSMUST00000137098 - NO_TRANSLATION retained_intron ENSMUSG00000041671 Pyroxd1 ENSMUST00000204971 - NO_TRANSLATION retained_intron ENSMUSG00000041671 Pyroxd1 ENSMUST00000123289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041671 Pyroxd1 ENSMUST00000041852 ENSMUSP00000036394 TRANSLATION protein_coding - CCDS20681.1 1 498.0 35.0 3.161 7.7 0.0 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000041671 Pyroxd1 ENSMUST00000153912 - NO_TRANSLATION retained_intron ENSMUSG00000019210 Atp6v1e1 ENSMUST00000203432 - NO_TRANSLATION retained_intron ENSMUSG00000019210 Atp6v1e1 ENSMUST00000205049 ENSMUSP00000145353 TRANSLATION protein_coding stop - 3 87.0 0.0 2.58 0.0 93.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000019210 Atp6v1e1 ENSMUST00000019354 ENSMUSP00000019354 TRANSLATION protein_coding - CCDS20484.1 1 226.0 0.0 6.66 36.9 260.1 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000019210 Atp6v1e1 ENSMUST00000204699 ENSMUSP00000145437 TRANSLATION protein_coding stop - 3 78.0 0.0 2.25 0.0 101.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000019210 Atp6v1e1 ENSMUST00000203527 - NO_TRANSLATION retained_intron ENSMUSG00000019210 Atp6v1e1 ENSMUST00000203783 ENSMUSP00000145324 TRANSLATION protein_coding start - 5 128.0 0.0 3.83 0.0 134.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000030030 1700003E16Rik ENSMUST00000203203 ENSMUSP00000145406 TRANSLATION protein_coding - - 2 113.0 0.0 1.0 0.0 179.4 0.0 -4,-5 0.0 - 2.574 MINOR ENSMUSG00000030030 1700003E16Rik ENSMUST00000032106 ENSMUSP00000032106 TRANSLATION protein_coding - CCDS51818.1 5 598.0 0.0 2.33 0.1 872.6 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000030283 St8sia1 ENSMUST00000205149 ENSMUSP00000145148 TRANSLATION nonsense_mediated_decay - - 1 101.0 0.0 0.6 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000030283 St8sia1 ENSMUST00000147058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030283 St8sia1 ENSMUST00000032421 ENSMUSP00000032421 TRANSLATION protein_coding - CCDS20689.1 1 355.0 14.0 4.6 0.0 262.3 0.0 -4,0 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000041390 Mdfic ENSMUST00000101663 ENSMUSP00000099186 TRANSLATION protein_coding - CCDS19919.1 1 247.0 0.0 0.0 10.7 236.0 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000041390 Mdfic ENSMUST00000128849 ENSMUSP00000140800 TRANSLATION protein_coding stop - 2 112.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041390 Mdfic ENSMUST00000140516 ENSMUSP00000117664 TRANSLATION nonsense_mediated_decay - - 1 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041390 Mdfic ENSMUST00000190255 ENSMUSP00000140641 TRANSLATION protein_coding - - 1 329.0 0.0 0.0 0.0 236.0 0.0 -4,-7 0.0403 2 6.0 MINOR ENSMUSG00000041390 Mdfic ENSMUST00000189359 ENSMUSP00000140208 TRANSLATION protein_coding - CCDS19919.1 1 247.0 0.0 0.0 10.7 236.0 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000041390 Mdfic ENSMUST00000125326 ENSMUSP00000139704 TRANSLATION protein_coding - - 1 200.0 0.0 0.0 0.0 65.2 0.0 -4,-5 0.0004 2 0.0 MINOR ENSMUSG00000041390 Mdfic ENSMUST00000120512 ENSMUSP00000113050 TRANSLATION protein_coding - CCDS19919.1 1 247.0 0.0 0.0 10.7 236.0 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000071356 Reg3b ENSMUST00000096904 ENSMUSP00000094667 TRANSLATION protein_coding - CCDS20253.1 1 175.0 3.0 3.98 10.3 85.7 0.0 4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000071356 Reg3b ENSMUST00000204873 ENSMUSP00000145280 TRANSLATION protein_coding stop - 3 140.0 2.0 2.9 0.0 55.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000071356 Reg3b ENSMUST00000204760 - NO_TRANSLATION retained_intron ENSMUSG00000071356 Reg3b ENSMUST00000203266 ENSMUSP00000145528 TRANSLATION protein_coding stop - 3 143.0 2.0 2.9 0.0 55.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000076556 Igkv4-57 ENSMUST00000103357 ENSMUSP00000100158 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 59.8 0.0 0,-3 0.7904 1 -2.0 PRINCIPAL:1 ENSMUSG00000043219 Hoxa6 ENSMUST00000062829 ENSMUSP00000058755 TRANSLATION protein_coding - CCDS20144.1 1 232.0 0.0 1.0 25.0 75.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000079299 Klrb1 ENSMUST00000203869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079299 Klrb1 ENSMUST00000112110 ENSMUSP00000107738 TRANSLATION protein_coding - CCDS39653.1 1 214.0 0.0 3.3 0.4 61.0 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030101 Sumf1 ENSMUST00000172188 ENSMUSP00000132321 TRANSLATION protein_coding - - 5 240.0 8.0 3.75 0.0 96.3 0.0 1,-2 0.0014 4 3.336 MINOR ENSMUSG00000030101 Sumf1 ENSMUST00000032191 ENSMUSP00000032191 TRANSLATION protein_coding - CCDS51868.1 1 372.0 12.0 7.25 3.6 302.4 0.0 1,-2 1.0 5 18.856 PRINCIPAL:1 ENSMUSG00000030101 Sumf1 ENSMUST00000166197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030101 Sumf1 ENSMUST00000171697 - NO_TRANSLATION retained_intron ENSMUSG00000030101 Sumf1 ENSMUST00000169446 ENSMUSP00000130061 TRANSLATION protein_coding start - 3 151.0 7.0 1.75 0.0 56.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030101 Sumf1 ENSMUST00000167338 ENSMUSP00000127537 TRANSLATION protein_coding - - 5 347.0 12.0 6.5 0.1 304.8 0.0 1,-2 0.139 5 16.5 MINOR ENSMUSG00000049168 Or6b1 ENSMUST00000204072 ENSMUSP00000145322 TRANSLATION protein_coding - CCDS20081.1 3 311.0 0.0 2.0 11.3 176.3 10.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049168 Or6b1 ENSMUST00000050729 ENSMUSP00000059233 TRANSLATION protein_coding - CCDS20081.1 - 311.0 0.0 2.0 11.3 176.3 10.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049168 Or6b1 ENSMUST00000204229 ENSMUSP00000145055 TRANSLATION protein_coding stop - 3 130.0 0.0 1.0 0.0 73.8 6.0 -4,-7 0.0037 - -2.0 MINOR ENSMUSG00000049168 Or6b1 ENSMUST00000214687 ENSMUSP00000148895 TRANSLATION protein_coding - CCDS20081.1 2 311.0 0.0 2.0 11.3 176.3 10.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000076594 Igkv6-13 ENSMUST00000103395 ENSMUSP00000100196 TRANSLATION IG_V_gene start/stop - - 95.0 3.0 1.0 0.0 58.9 0.0 -4,-5 0.0232 3 -2.0 ALTERNATIVE:2 ENSMUSG00000076594 Igkv6-13 ENSMUST00000198184 ENSMUSP00000143746 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.12 0.0 57.8 0.0 2,-1 0.7332 3 -2.0 PRINCIPAL:5 ENSMUSG00000029569 Tmem168 ENSMUST00000149123 ENSMUSP00000145372 TRANSLATION protein_coding - - 1 313.0 0.0 0.0 1.2 0.0 0.0 -3,-7 0.1213 6 0.024 MINOR ENSMUSG00000029569 Tmem168 ENSMUST00000140750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029569 Tmem168 ENSMUST00000155179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029569 Tmem168 ENSMUST00000031554 ENSMUSP00000031554 TRANSLATION protein_coding - CCDS19915.1 1 697.0 0.0 0.0 33.2 0.0 0.0 -4,-7 1.0 6 4.0 PRINCIPAL:1 ENSMUSG00000029569 Tmem168 ENSMUST00000138637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029569 Tmem168 ENSMUST00000127050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029569 Tmem168 ENSMUST00000146139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053460 Ggcx ENSMUST00000205738 ENSMUSP00000146112 TRANSLATION nonsense_mediated_decay - - 5 125.0 0.0 1.5 0.0 0.0 2.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000053460 Ggcx ENSMUST00000065906 ENSMUSP00000070109 TRANSLATION protein_coding - CCDS20242.1 1 757.0 0.0 6.48 8.5 558.5 3.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000053460 Ggcx ENSMUST00000132995 ENSMUSP00000145976 TRANSLATION nonsense_mediated_decay start - 5 45.0 0.0 1.38445 0.0 28.1 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000053460 Ggcx ENSMUST00000207012 ENSMUSP00000146123 TRANSLATION nonsense_mediated_decay start - 5 55.0 0.0 1.5 0.0 26.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053460 Ggcx ENSMUST00000207000 ENSMUSP00000145557 TRANSLATION nonsense_mediated_decay start - 5 50.0 0.0 0.0 0.0 51.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030364 Clec2h ENSMUST00000032518 ENSMUSP00000032518 TRANSLATION protein_coding - CCDS20576.1 1 218.0 0.0 3.862 0.0 46.0 1.0 -4,-6 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000030364 Clec2h ENSMUST00000204728 - NO_TRANSLATION retained_intron ENSMUSG00000030364 Clec2h ENSMUST00000204416 ENSMUSP00000145202 TRANSLATION protein_coding - - 3 108.0 0.0 0.982 0.0 0.0 1.0 -4,-6 0.0038 1 0.24 MINOR ENSMUSG00000030364 Clec2h ENSMUST00000205225 ENSMUSP00000145424 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000015189 Casd1 ENSMUST00000153963 ENSMUSP00000145445 TRANSLATION nonsense_mediated_decay - - 3 71.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000015189 Casd1 ENSMUST00000015333 ENSMUSP00000015333 TRANSLATION protein_coding - CCDS19896.1 1 797.0 4.0 0.0 9.3 718.3 10.0 -2,0 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000015189 Casd1 ENSMUST00000181734 ENSMUSP00000137822 TRANSLATION protein_coding - - 5 220.0 2.0 0.0 0.0 0.0 0.0 -2,0 0.0015 3 2.0 MINOR ENSMUSG00000015189 Casd1 ENSMUST00000141359 ENSMUSP00000115427 TRANSLATION protein_coding start/stop - 3 182.0 2.0 0.0 0.0 0.0 0.0 0,-4 0.0024 2 -2.0 MINOR ENSMUSG00000015189 Casd1 ENSMUST00000204372 ENSMUSP00000145371 TRANSLATION protein_coding start/stop - 3 132.0 0.0 0.0 0.0 99.7 3.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000029670 Ing3 ENSMUST00000151473 ENSMUSP00000120651 TRANSLATION protein_coding stop - 5 264.0 0.0 1.855 0.0 60.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000029670 Ing3 ENSMUST00000136200 ENSMUSP00000138656 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.63 0.0 41.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029670 Ing3 ENSMUST00000115389 ENSMUSP00000111047 TRANSLATION protein_coding - CCDS80491.1 5 410.0 8.0 3.855 1.1 108.3 0.0 -4,-5 0.3513 5 18.016 MINOR ENSMUSG00000029670 Ing3 ENSMUST00000152877 ENSMUSP00000138244 TRANSLATION nonsense_mediated_decay - - 5 93.0 0.0 1.755 7.3 91.1 0.0 -4,-5 0.1327 1 -2.0 MINOR ENSMUSG00000029670 Ing3 ENSMUST00000141689 - NO_TRANSLATION retained_intron ENSMUSG00000029670 Ing3 ENSMUST00000149728 ENSMUSP00000145391 TRANSLATION protein_coding stop - 2 121.0 0.0 1.825 0.0 87.5 0.0 -4,-5 0.0008 2 -2.0 MINOR ENSMUSG00000029670 Ing3 ENSMUST00000144534 - NO_TRANSLATION retained_intron ENSMUSG00000029670 Ing3 ENSMUST00000031680 ENSMUSP00000031680 TRANSLATION protein_coding - CCDS39434.1 1 421.0 8.0 3.855 26.7 108.3 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000057592 Vmn1r48 ENSMUST00000073415 ENSMUSP00000073121 TRANSLATION protein_coding - CCDS20350.1 - 302.0 0.0 0.0 0.7 427.2 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030282 Cmas ENSMUST00000146643 - NO_TRANSLATION retained_intron ENSMUSG00000030282 Cmas ENSMUST00000133248 ENSMUSP00000144875 TRANSLATION nonsense_mediated_decay - - 3 86.0 0.0 1.0 0.0 50.2 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000030282 Cmas ENSMUST00000204147 ENSMUSP00000145460 TRANSLATION nonsense_mediated_decay start - 3 115.0 0.0 1.0 0.0 52.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000030282 Cmas ENSMUST00000144920 ENSMUSP00000145392 TRANSLATION nonsense_mediated_decay - - 3 86.0 0.0 1.0 0.0 50.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030282 Cmas ENSMUST00000032419 ENSMUSP00000032419 TRANSLATION protein_coding - CCDS20687.1 1 432.0 8.0 8.0 10.3 220.1 0.0 -4,-6 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000064262 Gimap8 ENSMUST00000203509 ENSMUSP00000145255 TRANSLATION protein_coding - CCDS20108.1 1 688.0 52.0 3.0 0.4 573.8 0.0 -4,-7 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000064262 Gimap8 ENSMUST00000078223 ENSMUSP00000077350 TRANSLATION protein_coding - CCDS85043.1 1 349.0 23.0 0.6 0.0 185.3 0.0 -4,-7 0.0215 4 1.2 MINOR ENSMUSG00000064262 Gimap8 ENSMUST00000203083 ENSMUSP00000145286 TRANSLATION protein_coding - CCDS20108.1 1 688.0 52.0 3.0 0.4 573.8 0.0 -4,-7 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000076578 Igkv6-29 ENSMUST00000197371 ENSMUSP00000142786 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.0 0.0 65.0 0.0 3,-2 0.8234 - -2.0 PRINCIPAL:1 ENSMUSG00000030131 Mug2 ENSMUST00000081777 ENSMUSP00000080469 TRANSLATION protein_coding - CCDS39619.1 1 1451.0 2.0 25.065 0.0 555.3 0.0 4,-1 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000010797 Wnt2 ENSMUST00000010941 ENSMUSP00000010941 TRANSLATION protein_coding - CCDS19928.1 1 360.0 0.0 4.0 14.0 411.1 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095932 Vmn1r49 ENSMUST00000203791 ENSMUSP00000145107 TRANSLATION protein_coding - CCDS20351.1 2 310.0 0.0 0.0 0.1 538.8 6.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095932 Vmn1r49 ENSMUST00000226368 ENSMUSP00000154456 TRANSLATION protein_coding - CCDS20351.1 - 310.0 0.0 0.0 0.1 538.8 6.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095932 Vmn1r49 ENSMUST00000071865 ENSMUSP00000071762 TRANSLATION protein_coding - CCDS20351.1 - 310.0 0.0 0.0 0.1 538.8 6.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038451 Spsb2 ENSMUST00000130160 ENSMUSP00000122149 TRANSLATION protein_coding stop - 3 211.0 0.0 1.0 0.0 67.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000038451 Spsb2 ENSMUST00000112473 ENSMUSP00000108092 TRANSLATION protein_coding - - - 258.0 0.0 1.53 0.0 68.6 0.0 -4,-7 0.0201 2 6.51 MINOR ENSMUSG00000038451 Spsb2 ENSMUST00000052727 ENSMUSP00000060124 TRANSLATION protein_coding - CCDS20529.1 3 264.0 0.0 2.83 9.2 114.2 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000038451 Spsb2 ENSMUST00000047760 ENSMUSP00000041585 TRANSLATION protein_coding - CCDS20529.1 1 264.0 0.0 2.83 9.2 114.2 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000038451 Spsb2 ENSMUST00000143040 ENSMUSP00000118347 TRANSLATION protein_coding stop - 5 244.0 0.0 2.08 0.0 68.6 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000068328 Aup1 ENSMUST00000203915 ENSMUSP00000145020 TRANSLATION nonsense_mediated_decay - - 1 373.0 2.0 6.3375 0.9 36.6 3.0 -4,-6 0.2573 2 -2.0 MINOR ENSMUSG00000068328 Aup1 ENSMUST00000204385 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000204383 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000204510 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000204752 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000204761 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000205152 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000205042 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000204343 ENSMUSP00000145335 TRANSLATION nonsense_mediated_decay - - 1 148.0 0.0 1.2 0.0 0.0 3.0 -4,-6 0.002 - -2.0 MINOR ENSMUSG00000068328 Aup1 ENSMUST00000092618 ENSMUSP00000090281 TRANSLATION protein_coding - - 1 410.0 2.0 6.3375 6.6 36.6 3.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000068328 Aup1 ENSMUST00000203331 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000204719 ENSMUSP00000145409 TRANSLATION nonsense_mediated_decay - - 3 88.0 0.0 0.9 0.0 0.0 3.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000068328 Aup1 ENSMUST00000203749 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000204895 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000203123 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000204209 - NO_TRANSLATION retained_intron ENSMUSG00000068328 Aup1 ENSMUST00000203180 - NO_TRANSLATION retained_intron ENSMUSG00000058440 Nrf1 ENSMUST00000115211 ENSMUSP00000110866 TRANSLATION protein_coding - CCDS19968.1 1 503.0 0.0 0.0 28.1 407.2 0.0 -4,-5 1.0 5 4.828 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000132866 ENSMUSP00000114451 TRANSLATION protein_coding start - 2 218.0 0.0 0.0 0.0 26.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000004761 ENSMUSP00000004761 TRANSLATION protein_coding - CCDS51740.1 5 519.0 0.0 0.0 0.0 387.4 0.0 -4,-5 0.1167 5 0.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000069808 ENSMUSP00000065568 TRANSLATION protein_coding - CCDS51741.1 5 534.0 0.0 2.0 0.4 493.4 0.0 -4,-5 0.8347 5 12.0 PRINCIPAL:1 ENSMUSG00000058440 Nrf1 ENSMUST00000130096 - NO_TRANSLATION retained_intron ENSMUSG00000058440 Nrf1 ENSMUST00000123194 ENSMUSP00000114650 TRANSLATION protein_coding stop - 3 167.0 0.0 0.0 0.0 153.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000115204 ENSMUSP00000110858 TRANSLATION protein_coding - CCDS51742.1 1 449.0 0.0 0.0 0.0 387.4 0.0 -4,-5 0.0429 5 0.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000115208 ENSMUSP00000110863 TRANSLATION protein_coding - - 5 474.0 0.0 0.0 0.0 387.4 0.0 -4,-5 0.0035 5 0.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000146988 - NO_TRANSLATION retained_intron ENSMUSG00000058440 Nrf1 ENSMUST00000069831 ENSMUSP00000067447 TRANSLATION protein_coding - CCDS51739.1 5 531.0 0.0 0.0 0.0 387.4 0.0 -4,-5 0.1593 5 0.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000115209 ENSMUSP00000110864 TRANSLATION protein_coding - CCDS19968.1 5 503.0 0.0 0.0 28.1 407.2 0.0 -4,-5 1.0 5 4.828 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000148990 ENSMUSP00000143957 TRANSLATION protein_coding stop - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000115199 ENSMUSP00000110853 TRANSLATION protein_coding - CCDS51739.1 1 531.0 0.0 0.0 0.0 387.4 0.0 -4,-5 0.1593 5 0.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000133928 ENSMUSP00000117868 TRANSLATION protein_coding stop - 5 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000115206 ENSMUSP00000110860 TRANSLATION protein_coding - CCDS51741.1 1 534.0 0.0 2.0 0.4 493.4 0.0 -4,-5 0.8347 5 12.0 PRINCIPAL:1 ENSMUSG00000058440 Nrf1 ENSMUST00000170535 ENSMUSP00000132637 TRANSLATION protein_coding - CCDS51742.1 5 449.0 0.0 0.0 0.0 387.4 0.0 -4,-5 0.0429 5 0.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000115212 ENSMUSP00000110867 TRANSLATION protein_coding - CCDS19968.1 1 503.0 0.0 0.0 28.1 407.2 0.0 -4,-5 1.0 5 4.828 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000167972 ENSMUSP00000130108 TRANSLATION protein_coding - CCDS19968.1 5 503.0 0.0 0.0 28.1 407.2 0.0 -4,-5 1.0 5 4.828 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000115200 ENSMUSP00000110854 TRANSLATION protein_coding - CCDS51740.1 1 519.0 0.0 0.0 0.0 387.4 0.0 -4,-5 0.1167 5 0.0 MINOR ENSMUSG00000058440 Nrf1 ENSMUST00000133837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030351 Tspan11 ENSMUST00000149801 - NO_TRANSLATION retained_intron ENSMUSG00000030351 Tspan11 ENSMUST00000032501 ENSMUSP00000032501 TRANSLATION protein_coding - CCDS20567.1 1 253.0 0.0 3.4 16.0 173.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030019 Fbxl14 ENSMUST00000032094 ENSMUSP00000032094 TRANSLATION protein_coding - CCDS20475.1 - 400.0 0.0 1.0 31.2 99.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000043298 Smco3 ENSMUST00000111894 ENSMUSP00000107525 TRANSLATION protein_coding - CCDS20656.1 1 225.0 0.0 1.0 15.8 207.4 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000043298 Smco3 ENSMUST00000203468 ENSMUSP00000144838 TRANSLATION protein_coding - CCDS20656.1 1 225.0 0.0 1.0 15.8 207.4 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000043298 Smco3 ENSMUST00000068293 ENSMUSP00000066235 TRANSLATION protein_coding - CCDS20656.1 1 225.0 0.0 1.0 15.8 207.4 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000053007 Creb5 ENSMUST00000203641 ENSMUSP00000144925 TRANSLATION protein_coding stop - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000053007 Creb5 ENSMUST00000204861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053007 Creb5 ENSMUST00000203528 ENSMUSP00000144979 TRANSLATION protein_coding - CCDS85049.1 5 501.0 4.0 3.4 13.1 48.2 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000053007 Creb5 ENSMUST00000204136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053007 Creb5 ENSMUST00000204748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053007 Creb5 ENSMUST00000211679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053007 Creb5 ENSMUST00000204143 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053007 Creb5 ENSMUST00000205222 - NO_TRANSLATION retained_intron ENSMUSG00000053007 Creb5 ENSMUST00000205120 ENSMUSP00000144719 TRANSLATION protein_coding - CCDS20153.1 1 357.0 0.0 2.0 4.4 48.2 0.0 -3,0 0.3461 1 10.322 MINOR ENSMUSG00000053007 Creb5 ENSMUST00000203575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053007 Creb5 ENSMUST00000204096 - NO_TRANSLATION retained_intron ENSMUSG00000053007 Creb5 ENSMUST00000205200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053007 Creb5 ENSMUST00000203487 ENSMUSP00000144851 TRANSLATION protein_coding - - 5 508.0 4.0 3.4 9.6 48.2 0.0 -4,-5 0.7949 3 18.844 MINOR ENSMUSG00000053007 Creb5 ENSMUST00000047450 ENSMUSP00000038532 TRANSLATION protein_coding - CCDS85049.1 5 501.0 4.0 3.4 13.1 48.2 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000053007 Creb5 ENSMUST00000204245 - NO_TRANSLATION retained_intron ENSMUSG00000079495 Nat8f6 ENSMUST00000087656 ENSMUSP00000084938 TRANSLATION protein_coding - CCDS51830.1 1 226.0 21.0 1.0 3.5 50.0 2.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000079495 Nat8f6 ENSMUST00000174143 ENSMUSP00000133846 TRANSLATION protein_coding - CCDS51830.1 3 226.0 21.0 1.0 3.5 50.0 2.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000029828 4921507P07Rik ENSMUST00000031852 ENSMUSP00000031852 TRANSLATION protein_coding - CCDS20132.1 1 588.0 0.0 0.0 9.6 484.1 0.0 -4,-5 1.0 9 9.0 PRINCIPAL:1 ENSMUSG00000029517 Ankrd7 ENSMUST00000115396 ENSMUSP00000111054 TRANSLATION protein_coding - CCDS51724.1 1 280.0 0.0 5.1 0.1 99.8 0.0 -4,-7 0.9444 - 8.0 PRINCIPAL:1 ENSMUSG00000029517 Ankrd7 ENSMUST00000031489 ENSMUSP00000031489 TRANSLATION protein_coding - CCDS19933.1 1 279.0 0.0 5.1 0.1 103.8 0.0 -4,-7 0.6521 - 6.666 MINOR ENSMUSG00000055874 Foxi3 ENSMUST00000163089 ENSMUSP00000125380 TRANSLATION protein_coding - - 5 425.0 0.0 0.6 0.3 133.8 0.0 -4,-2 0.8088 - 8.0 PRINCIPAL:2 ENSMUSG00000055874 Foxi3 ENSMUST00000069634 ENSMUSP00000065664 TRANSLATION protein_coding - CCDS51804.1 5 399.0 0.0 0.6 0.1 133.8 0.0 -4,-5 0.4684 - 8.0 ALTERNATIVE:2 ENSMUSG00000048022 Tmem229a ENSMUST00000127247 ENSMUSP00000116234 TRANSLATION protein_coding - CCDS51729.1 - 371.0 0.0 0.0 3.3 0.0 0.0 -4,-7 0.9632 4 1.0 PRINCIPAL:1 ENSMUSG00000090019 Gimap1 ENSMUST00000203797 - NO_TRANSLATION retained_intron ENSMUSG00000090019 Gimap1 ENSMUST00000204168 ENSMUSP00000145479 TRANSLATION protein_coding - CCDS20113.1 1 300.0 20.0 2.0 0.0 263.6 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000090019 Gimap1 ENSMUST00000205031 - NO_TRANSLATION retained_intron ENSMUSG00000090019 Gimap1 ENSMUST00000142703 - NO_TRANSLATION retained_intron ENSMUSG00000090019 Gimap1 ENSMUST00000140054 ENSMUSP00000118345 TRANSLATION protein_coding stop - 3 160.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090019 Gimap1 ENSMUST00000054368 ENSMUSP00000062108 TRANSLATION protein_coding - CCDS20113.1 1 300.0 20.0 2.0 0.0 263.6 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000094420 Igkv10-96 ENSMUST00000103328 ENSMUSP00000100129 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.1 0.0 62.6 0.0 4,-1 0.8294 1 -2.0 PRINCIPAL:1 ENSMUSG00000046652 Tas2r143 ENSMUST00000057398 ENSMUSP00000057910 TRANSLATION protein_coding - CCDS20068.1 - 293.0 0.0 0.0 0.4 222.6 0.0 1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033634 Nat8f2 ENSMUST00000045008 ENSMUSP00000044587 TRANSLATION protein_coding - CCDS20302.1 1 238.0 21.0 1.0 0.0 62.1 0.0 -4,-7 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000096844 Igkv6-14 ENSMUST00000103394 ENSMUSP00000100195 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.0 0.0 56.3 0.0 4,-1 0.8323 1 -2.0 PRINCIPAL:1 ENSMUSG00000060412 Tas2r124 ENSMUST00000076150 ENSMUSP00000075509 TRANSLATION protein_coding - CCDS20620.1 - 309.0 0.0 0.0 0.1 302.9 0.0 0,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094797 Igkv6-15 ENSMUST00000103393 ENSMUSP00000100194 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.0 0.0 56.7 0.0 2,-2 0.8336 2 -2.0 PRINCIPAL:1 ENSMUSG00000094192 Or2f2 ENSMUST00000215719 ENSMUSP00000149548 TRANSLATION protein_coding - CCDS20079.1 5 317.0 0.0 1.0 12.5 176.3 4.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094192 Or2f2 ENSMUST00000214465 ENSMUSP00000149932 TRANSLATION protein_coding - CCDS20079.1 5 317.0 0.0 1.0 12.5 176.3 4.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094192 Or2f2 ENSMUST00000217701 ENSMUSP00000151882 TRANSLATION protein_coding - CCDS20079.1 5 317.0 0.0 1.0 12.5 176.3 4.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094192 Or2f2 ENSMUST00000075468 ENSMUSP00000074914 TRANSLATION protein_coding - CCDS20079.1 - 317.0 0.0 1.0 12.5 176.3 4.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030322 Mbd4 ENSMUST00000147282 ENSMUSP00000125619 TRANSLATION nonsense_mediated_decay - - 2 365.0 0.0 0.8 0.0 70.4 0.0 -4,-5 0.0046 1 -2.0 MINOR ENSMUSG00000030322 Mbd4 ENSMUST00000032469 ENSMUSP00000032469 TRANSLATION protein_coding - CCDS39603.1 1 554.0 3.0 4.55 0.0 94.8 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000030322 Mbd4 ENSMUST00000133830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030322 Mbd4 ENSMUST00000122816 ENSMUSP00000145433 TRANSLATION protein_coding - - 1 386.0 0.0 0.8 0.0 70.4 0.0 -4,-5 0.0046 1 4.458 MINOR ENSMUSG00000030322 Mbd4 ENSMUST00000203643 ENSMUSP00000144930 TRANSLATION protein_coding start - 3 175.0 3.0 3.75 0.0 24.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000049694 BC048671 ENSMUST00000167550 ENSMUSP00000132052 TRANSLATION protein_coding - CCDS20357.1 1 137.0 0.0 0.0 0.3 0.0 0.0 -4,-5 0.8666 - 0.0 PRINCIPAL:1 ENSMUSG00000049694 BC048671 ENSMUST00000054799 ENSMUSP00000058483 TRANSLATION protein_coding - CCDS20357.1 1 137.0 0.0 0.0 0.3 0.0 0.0 -4,-5 0.8666 - 0.0 PRINCIPAL:1 ENSMUSG00000034269 Setd5 ENSMUST00000124467 - NO_TRANSLATION retained_intron ENSMUSG00000034269 Setd5 ENSMUST00000113157 ENSMUSP00000108782 TRANSLATION protein_coding - - 5 1460.0 8.0 3.0 8.2 24.9 0.0 -4,-5 0.8996 8 15.0 ALTERNATIVE:1 ENSMUSG00000034269 Setd5 ENSMUST00000125003 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034269 Setd5 ENSMUST00000136128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034269 Setd5 ENSMUST00000149584 - NO_TRANSLATION retained_intron ENSMUSG00000034269 Setd5 ENSMUST00000204377 - NO_TRANSLATION retained_intron ENSMUSG00000034269 Setd5 ENSMUST00000042889 ENSMUSP00000047398 TRANSLATION protein_coding - CCDS20411.1 1 1441.0 8.0 3.0 8.2 24.9 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:4 ENSMUSG00000034269 Setd5 ENSMUST00000141072 - NO_TRANSLATION retained_intron ENSMUSG00000034269 Setd5 ENSMUST00000153513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034269 Setd5 ENSMUST00000138327 - NO_TRANSLATION retained_intron ENSMUSG00000034269 Setd5 ENSMUST00000143998 - NO_TRANSLATION retained_intron ENSMUSG00000034269 Setd5 ENSMUST00000150107 - NO_TRANSLATION retained_intron ENSMUSG00000034269 Setd5 ENSMUST00000113155 ENSMUSP00000108780 TRANSLATION protein_coding - - 1 1460.0 8.0 3.0 8.2 24.9 0.0 -4,-5 0.8996 8 15.0 ALTERNATIVE:1 ENSMUSG00000034269 Setd5 ENSMUST00000156048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094872 Igkv9-120 ENSMUST00000103316 ENSMUSP00000100117 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.1 0.0 45.5 0.0 3,-1 0.8194 3 -2.0 PRINCIPAL:1 ENSMUSG00000094356 Igkv8-28 ENSMUST00000103380 ENSMUSP00000100181 TRANSLATION IG_V_gene start/stop - - 101.0 0.0 1.0 0.0 69.4 0.0 -4,-5 0.0594 2 -2.0 ALTERNATIVE:2 ENSMUSG00000094356 Igkv8-28 ENSMUST00000197525 ENSMUSP00000142628 TRANSLATION IG_V_gene stop - - 121.0 0.0 1.0 0.0 69.4 0.0 3,-1 0.8238 2 -2.0 PRINCIPAL:5 ENSMUSG00000029780 Nt5c3 ENSMUST00000152447 ENSMUSP00000138606 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.066 0.0 0.0 1.0 0,-4 0.0041 - -2.0 MINOR ENSMUSG00000029780 Nt5c3 ENSMUST00000135558 ENSMUSP00000145230 TRANSLATION nonsense_mediated_decay - - 5 56.0 0.0 0.066 0.0 0.0 1.0 0,-4 0.0041 - -2.0 MINOR ENSMUSG00000029780 Nt5c3 ENSMUST00000126137 - NO_TRANSLATION retained_intron ENSMUSG00000029780 Nt5c3 ENSMUST00000134577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029780 Nt5c3 ENSMUST00000127725 - NO_TRANSLATION retained_intron ENSMUSG00000029780 Nt5c3 ENSMUST00000205087 ENSMUSP00000145410 TRANSLATION protein_coding start/stop - 3 142.0 6.0 3.816 0.0 167.3 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000029780 Nt5c3 ENSMUST00000138647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029780 Nt5c3 ENSMUST00000031793 ENSMUSP00000031793 TRANSLATION protein_coding - CCDS20171.1 1 331.0 10.0 7.566 26.1 386.5 1.0 0,-4 1.0 14 21.13 PRINCIPAL:1 ENSMUSG00000029780 Nt5c3 ENSMUST00000101367 ENSMUSP00000098918 TRANSLATION protein_coding - CCDS57424.1 1 297.0 10.0 8.0 12.5 386.5 0.0 -4,-6 0.7589 13 19.832 MINOR ENSMUSG00000001158 Snrnp27 ENSMUST00000001186 ENSMUSP00000001186 TRANSLATION protein_coding - CCDS20315.1 1 155.0 0.0 0.0 6.0 124.6 0.0 -4,-7 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000001158 Snrnp27 ENSMUST00000133404 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001158 Snrnp27 ENSMUST00000113683 ENSMUSP00000109313 TRANSLATION protein_coding - - 1 191.0 0.0 0.0 0.0 75.7 0.0 -4,-7 0.0004 3 3.066 MINOR ENSMUSG00000001158 Snrnp27 ENSMUST00000131674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029993 Nfu1 ENSMUST00000140343 - NO_TRANSLATION retained_intron ENSMUSG00000029993 Nfu1 ENSMUST00000120240 ENSMUSP00000113637 TRANSLATION protein_coding - CCDS51836.1 5 256.0 0.0 4.7 2.1 207.1 0.0 -4,0 1.0 6 9.0 PRINCIPAL:4 ENSMUSG00000029993 Nfu1 ENSMUST00000127819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029993 Nfu1 ENSMUST00000144776 ENSMUSP00000121746 TRANSLATION protein_coding stop - 3 255.0 0.0 2.75 0.0 104.1 0.0 -4,0 0.0432 4 -2.0 MINOR ENSMUSG00000029993 Nfu1 ENSMUST00000204103 - NO_TRANSLATION retained_intron ENSMUSG00000029993 Nfu1 ENSMUST00000203512 - NO_TRANSLATION retained_intron ENSMUSG00000029993 Nfu1 ENSMUST00000032060 ENSMUSP00000032060 TRANSLATION protein_coding - CCDS51836.1 1 256.0 0.0 4.7 2.1 207.1 0.0 -4,0 1.0 6 9.0 PRINCIPAL:4 ENSMUSG00000029993 Nfu1 ENSMUST00000117583 ENSMUSP00000113332 TRANSLATION protein_coding - CCDS85088.1 1 255.0 0.0 4.7 2.1 207.1 0.0 -4,0 0.9358 6 9.0 ALTERNATIVE:2 ENSMUSG00000029993 Nfu1 ENSMUST00000205018 - NO_TRANSLATION retained_intron ENSMUSG00000014551 Mrps25 ENSMUST00000014695 - NO_TRANSLATION retained_intron ENSMUSG00000014551 Mrps25 ENSMUST00000140438 ENSMUSP00000114402 TRANSLATION protein_coding - CCDS20373.1 1 171.0 0.0 3.75 34.2 42.0 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000014551 Mrps25 ENSMUST00000134132 - NO_TRANSLATION retained_intron ENSMUSG00000076526 Igkv12-98 ENSMUST00000196839 ENSMUSP00000143549 TRANSLATION IG_V_gene stop - - 115.0 0.0 1.1 0.0 52.0 0.0 3,-2 0.821 1 -2.0 PRINCIPAL:1 ENSMUSG00000030205 Gprc5d ENSMUST00000032327 ENSMUSP00000032327 TRANSLATION protein_coding - CCDS57462.1 1 344.0 0.0 0.4 9.5 89.0 7.0 -4,-7 0.875 1 11.0 ALTERNATIVE:1 ENSMUSG00000030205 Gprc5d ENSMUST00000111922 ENSMUSP00000107553 TRANSLATION protein_coding - CCDS39680.1 1 300.0 0.0 0.4 9.5 89.0 7.0 -4,-7 1.0 1 11.0 PRINCIPAL:4 ENSMUSG00000029865 Sval1 ENSMUST00000031898 ENSMUSP00000031898 TRANSLATION protein_coding - CCDS20058.1 1 151.0 0.0 3.0 0.0 165.7 0.0 3,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000004266 Ptpn6 ENSMUST00000174265 ENSMUSP00000133991 TRANSLATION protein_coding - - 5 556.0 12.0 13.28 0.0 368.4 0.0 -4,-5 0.0068 23 12.078 MINOR ENSMUSG00000004266 Ptpn6 ENSMUST00000173228 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004266 Ptpn6 ENSMUST00000172770 - NO_TRANSLATION retained_intron ENSMUSG00000004266 Ptpn6 ENSMUST00000172613 - NO_TRANSLATION retained_intron ENSMUSG00000004266 Ptpn6 ENSMUST00000004377 ENSMUSP00000004377 TRANSLATION protein_coding - CCDS51908.1 1 597.0 12.0 14.61 6.0 422.8 0.0 -4,-7 0.8577 26 19.515 MINOR ENSMUSG00000004266 Ptpn6 ENSMUST00000172690 ENSMUSP00000134638 TRANSLATION protein_coding start/stop - 1 45.0 0.0 1.33 0.0 38.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004266 Ptpn6 ENSMUST00000174787 ENSMUSP00000133429 TRANSLATION protein_coding start/stop - 1 40.0 0.0 0.33 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000004266 Ptpn6 ENSMUST00000171549 ENSMUSP00000129124 TRANSLATION protein_coding - CCDS51908.1 1 597.0 12.0 14.61 6.0 422.8 0.0 -4,-7 0.8577 26 19.515 MINOR ENSMUSG00000004266 Ptpn6 ENSMUST00000173647 ENSMUSP00000133747 TRANSLATION protein_coding stop - 5 67.0 0.0 2.0 0.0 33.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000004266 Ptpn6 ENSMUST00000112484 ENSMUSP00000108103 TRANSLATION protein_coding - CCDS39628.1 1 595.0 12.0 14.61 10.9 422.8 0.0 -4,-7 1.0 26 21.0 PRINCIPAL:1 ENSMUSG00000004266 Ptpn6 ENSMUST00000173315 ENSMUSP00000134274 TRANSLATION protein_coding start - 2 101.0 0.0 0.95 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030022 Adamts9 ENSMUST00000125490 - NO_TRANSLATION retained_intron ENSMUSG00000030022 Adamts9 ENSMUST00000167391 ENSMUSP00000126498 TRANSLATION protein_coding - CCDS51855.1 5 1350.0 6.0 5.4 0.0 684.9 0.0 -4,-5 0.1816 - 0.0 MINOR ENSMUSG00000030022 Adamts9 ENSMUST00000113438 ENSMUSP00000109065 TRANSLATION protein_coding - - 5 1931.0 20.0 10.714 6.2 913.8 0.0 0,-4 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000030022 Adamts9 ENSMUST00000203690 - NO_TRANSLATION retained_intron ENSMUSG00000030022 Adamts9 ENSMUST00000136751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030022 Adamts9 ENSMUST00000130314 - NO_TRANSLATION retained_intron ENSMUSG00000033769 Exoc6b ENSMUST00000204011 - NO_TRANSLATION retained_intron ENSMUSG00000033769 Exoc6b ENSMUST00000161443 - NO_TRANSLATION retained_intron ENSMUSG00000033769 Exoc6b ENSMUST00000162821 ENSMUSP00000124512 TRANSLATION nonsense_mediated_decay - - 1 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033769 Exoc6b ENSMUST00000160197 ENSMUSP00000125312 TRANSLATION protein_coding - CCDS51824.1 1 810.0 0.0 6.0 10.3 342.4 0.0 -4,-5 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000033769 Exoc6b ENSMUST00000046334 - NO_TRANSLATION retained_intron ENSMUSG00000033769 Exoc6b ENSMUST00000160783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033769 Exoc6b ENSMUST00000162786 - NO_TRANSLATION retained_intron ENSMUSG00000033769 Exoc6b ENSMUST00000051531 - NO_TRANSLATION retained_intron ENSMUSG00000049093 Il23r ENSMUST00000118364 ENSMUSP00000113342 TRANSLATION protein_coding - - 1 644.0 0.0 5.0 0.0 0.0 0.0 4,-1 0.7641 - 6.0 PRINCIPAL:1 ENSMUSG00000071428 Vmn1r27 ENSMUST00000228530 ENSMUSP00000154236 TRANSLATION protein_coding - CCDS20192.1 - 303.0 0.0 0.0 0.4 168.6 7.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000071428 Vmn1r27 ENSMUST00000226666 ENSMUSP00000154455 TRANSLATION protein_coding - - - 253.0 0.0 0.0 0.0 154.8 5.0 -4,-7 0.0197 - 0.0 MINOR ENSMUSG00000071428 Vmn1r27 ENSMUST00000095862 ENSMUSP00000093547 TRANSLATION protein_coding - CCDS20192.1 - 303.0 0.0 0.0 0.4 168.6 7.0 -3,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000029915 Clec5a ENSMUST00000177178 ENSMUSP00000135240 TRANSLATION protein_coding - - 1 164.0 2.0 3.57375 8.0 52.8 3.0 0,-4 0.5746 1 12.358 MINOR ENSMUSG00000029915 Clec5a ENSMUST00000031975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029915 Clec5a ENSMUST00000101491 ENSMUSP00000099030 TRANSLATION protein_coding - CCDS20037.1 1 165.0 2.0 3.57375 8.0 60.9 3.0 0,-4 0.754 1 12.358 ALTERNATIVE:1 ENSMUSG00000029915 Clec5a ENSMUST00000129948 ENSMUSP00000121848 TRANSLATION protein_coding - CCDS20036.1 1 190.0 2.0 3.87375 8.1 60.9 3.0 1,-4 1.0 1 13.0 PRINCIPAL:4 ENSMUSG00000047735 Samd9l ENSMUST00000201638 ENSMUSP00000144632 TRANSLATION protein_coding stop - 2 103.0 0.0 0.4 0.0 25.9 0.0 -4,-5 0.0718 2 -2.0 MINOR ENSMUSG00000047735 Samd9l ENSMUST00000120087 ENSMUSP00000112688 TRANSLATION protein_coding - CCDS51712.1 1 1579.0 9.0 0.0 0.4 25.9 0.0 -4,-5 1.0 36 12.0 PRINCIPAL:1 ENSMUSG00000076525 Igkv1-99 ENSMUST00000168090 ENSMUSP00000132003 TRANSLATION IG_V_gene stop - - 120.0 3.0 1.1 0.0 56.9 0.0 3,-2 0.8277 - -2.0 PRINCIPAL:1 ENSMUSG00000032758 Kap ENSMUST00000203168 ENSMUSP00000145449 TRANSLATION protein_coding - - 3 104.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.1084 1 0.0 ALTERNATIVE:2 ENSMUSG00000032758 Kap ENSMUST00000048032 ENSMUSP00000041060 TRANSLATION protein_coding - CCDS20635.1 1 121.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.9016 1 0.0 PRINCIPAL:2 ENSMUSG00000029552 Tes ENSMUST00000200690 - NO_TRANSLATION retained_intron ENSMUSG00000029552 Tes ENSMUST00000076654 ENSMUSP00000075950 TRANSLATION protein_coding - - 1 410.0 23.0 3.8 11.4 239.6 0.0 -4,-5 0.7733 19 20.312 MINOR ENSMUSG00000029552 Tes ENSMUST00000115467 ENSMUSP00000111127 TRANSLATION protein_coding - CCDS39429.1 1 419.0 23.0 3.8 19.0 239.6 0.0 -4,-5 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000029552 Tes ENSMUST00000154266 ENSMUSP00000118791 TRANSLATION protein_coding stop - 5 79.0 0.0 0.8 0.0 91.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000029552 Tes ENSMUST00000121170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030096 Slc6a6 ENSMUST00000032185 ENSMUSP00000032185 TRANSLATION protein_coding - CCDS39570.1 1 621.0 0.0 13.14 22.0 795.4 12.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000030096 Slc6a6 ENSMUST00000205480 ENSMUSP00000145794 TRANSLATION protein_coding stop - 5 110.0 0.0 1.68 0.0 122.2 5.0 -4,-5 0.0021 3 -2.0 MINOR ENSMUSG00000030096 Slc6a6 ENSMUST00000206988 - NO_TRANSLATION retained_intron ENSMUSG00000030096 Slc6a6 ENSMUST00000205828 ENSMUSP00000146312 TRANSLATION protein_coding stop - 5 83.0 0.0 0.93 0.0 82.2 2.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030096 Slc6a6 ENSMUST00000205477 - NO_TRANSLATION retained_intron ENSMUSG00000030096 Slc6a6 ENSMUST00000205663 ENSMUSP00000145986 TRANSLATION nonsense_mediated_decay start - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000030096 Slc6a6 ENSMUST00000205443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030096 Slc6a6 ENSMUST00000205764 - NO_TRANSLATION retained_intron ENSMUSG00000030096 Slc6a6 ENSMUST00000206835 - NO_TRANSLATION retained_intron ENSMUSG00000030096 Slc6a6 ENSMUST00000206451 - NO_TRANSLATION retained_intron ENSMUSG00000030096 Slc6a6 ENSMUST00000206545 ENSMUSP00000146306 TRANSLATION protein_coding stop - 3 121.0 0.0 2.01 0.0 144.2 5.0 -4,-5 0.0021 3 -2.0 MINOR ENSMUSG00000092164 Rergl ENSMUST00000170650 ENSMUSP00000131303 TRANSLATION protein_coding - CCDS51946.1 1 204.0 15.0 2.55 28.4 96.8 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000068250 Amn1 ENSMUST00000203043 - NO_TRANSLATION retained_intron ENSMUSG00000068250 Amn1 ENSMUST00000152062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068250 Amn1 ENSMUST00000204681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068250 Amn1 ENSMUST00000156864 ENSMUSP00000145210 TRANSLATION nonsense_mediated_decay start - 3 130.0 0.0 2.65 0.0 15.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000068250 Amn1 ENSMUST00000111535 ENSMUSP00000107160 TRANSLATION protein_coding - CCDS51961.1 5 258.0 0.0 6.75 9.1 40.4 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000068250 Amn1 ENSMUST00000127743 - NO_TRANSLATION retained_intron ENSMUSG00000068250 Amn1 ENSMUST00000134181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068250 Amn1 ENSMUST00000141346 ENSMUSP00000116060 TRANSLATION protein_coding stop - 3 121.0 0.0 3.0 0.0 29.8 0.0 -4,-6 0.0012 4 -2.0 MINOR ENSMUSG00000068250 Amn1 ENSMUST00000095319 ENSMUSP00000092957 TRANSLATION protein_coding - - 1 215.0 0.0 5.75 2.8 40.4 0.0 -4,-6 0.1515 8 10.668 MINOR ENSMUSG00000068250 Amn1 ENSMUST00000150610 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068250 Amn1 ENSMUST00000149149 - NO_TRANSLATION retained_intron ENSMUSG00000049107 Ntf3 ENSMUST00000204542 ENSMUSP00000144828 TRANSLATION protein_coding - CCDS51914.1 1 271.0 0.0 0.8 13.4 173.3 1.0 -2,-4 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000049107 Ntf3 ENSMUST00000050484 ENSMUSP00000052302 TRANSLATION protein_coding - CCDS20553.1 2 258.0 0.0 0.8 10.0 173.3 0.0 2,-3 0.9096 - 10.904 ALTERNATIVE:1 ENSMUSG00000049107 Ntf3 ENSMUST00000112244 ENSMUSP00000107863 TRANSLATION protein_coding - CCDS51914.1 3 271.0 0.0 0.8 13.4 173.3 1.0 -2,-4 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000057163 Prss2 ENSMUST00000070380 ENSMUSP00000065393 TRANSLATION protein_coding - CCDS20050.1 1 246.0 21.0 4.0 33.9 274.0 0.0 4,-1 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000004446 Bid ENSMUST00000161594 - NO_TRANSLATION retained_intron ENSMUSG00000004446 Bid ENSMUST00000145948 ENSMUSP00000117529 TRANSLATION protein_coding stop - 3 52.0 0.0 1.0 0.0 48.3 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000004446 Bid ENSMUST00000160684 ENSMUSP00000125731 TRANSLATION nonsense_mediated_decay - CCDS20486.1 1 195.0 0.0 3.75 3.3 302.4 0.0 -4,-5 1.0 5 -2.0 MINOR ENSMUSG00000004446 Bid ENSMUST00000004560 ENSMUSP00000004560 TRANSLATION protein_coding - CCDS20486.1 1 195.0 0.0 3.75 3.3 302.4 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000004446 Bid ENSMUST00000125915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067338 Tuba3b ENSMUST00000087445 ENSMUSP00000084713 TRANSLATION protein_coding - CCDS39707.1 1 450.0 27.0 4.0 36.9 400.2 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000115668 Vmn1r25 ENSMUST00000228585 ENSMUSP00000154074 TRANSLATION protein_coding - CCDS20189.1 - 302.0 0.0 0.0 0.4 171.5 4.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115668 Vmn1r25 ENSMUST00000176572 ENSMUSP00000135860 TRANSLATION protein_coding - CCDS20189.1 - 302.0 0.0 0.0 0.4 171.5 4.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000076487 Trbj1-5 ENSMUST00000103288 ENSMUSP00000141795 TRANSLATION TR_J_gene start/stop - - 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000095335 Igkv3-5 ENSMUST00000103400 ENSMUSP00000100201 TRANSLATION IG_V_gene stop - - 119.0 0.0 1.1 0.1 71.9 0.0 4,-1 0.8213 1 -2.0 PRINCIPAL:1 ENSMUSG00000052763 Zfp212 ENSMUST00000009411 ENSMUSP00000009411 TRANSLATION protein_coding - CCDS51761.1 1 492.0 16.0 1.4 5.5 166.1 0.0 -4,0 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000052763 Zfp212 ENSMUST00000156500 - NO_TRANSLATION retained_intron ENSMUSG00000090346 Vmn1r5 ENSMUST00000164307 ENSMUSP00000131092 TRANSLATION protein_coding - CCDS51791.1 - 315.0 0.0 0.0 0.0 173.3 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000090346 Vmn1r5 ENSMUST00000228276 ENSMUSP00000154081 TRANSLATION protein_coding - CCDS51791.1 - 315.0 0.0 0.0 0.0 173.3 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000090346 Vmn1r5 ENSMUST00000226130 ENSMUSP00000153712 TRANSLATION protein_coding - CCDS51791.1 - 315.0 0.0 0.0 0.0 173.3 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054431 Or2q1 ENSMUST00000218832 ENSMUSP00000151908 TRANSLATION protein_coding - CCDS20080.1 5 310.0 0.0 1.0 6.4 164.9 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000054431 Or2q1 ENSMUST00000067503 ENSMUSP00000068823 TRANSLATION protein_coding - CCDS20080.1 - 310.0 0.0 1.0 6.4 164.9 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030157 Clec2d ENSMUST00000032260 ENSMUSP00000032260 TRANSLATION protein_coding - CCDS20581.1 1 207.0 0.0 3.0 0.1 49.2 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000030236 Slco1b2 ENSMUST00000042812 ENSMUSP00000044326 TRANSLATION protein_coding - CCDS20678.1 1 689.0 0.0 0.0 0.0 623.7 11.0 -4,-7 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000030236 Slco1b2 ENSMUST00000162675 - NO_TRANSLATION retained_intron ENSMUSG00000030236 Slco1b2 ENSMUST00000203597 ENSMUSP00000144747 TRANSLATION protein_coding - - 5 654.0 0.0 0.0 0.1 592.5 10.0 -4,-7 0.0355 8 4.128 MINOR ENSMUSG00000030236 Slco1b2 ENSMUST00000160179 - NO_TRANSLATION retained_intron ENSMUSG00000047203 Vmn1r54 ENSMUST00000058039 ENSMUSP00000063052 TRANSLATION protein_coding - CCDS20356.1 - 315.0 0.0 0.0 0.0 305.9 6.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047203 Vmn1r54 ENSMUST00000226921 ENSMUSP00000154354 TRANSLATION protein_coding - CCDS20356.1 - 315.0 0.0 0.0 0.0 305.9 6.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000050654 Or6d15 ENSMUST00000061723 ENSMUSP00000052425 TRANSLATION protein_coding - CCDS20458.1 - 310.0 0.0 1.0 2.3 159.1 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000002413 Braf ENSMUST00000169647 - NO_TRANSLATION retained_intron ENSMUSG00000002413 Braf ENSMUST00000167073 - NO_TRANSLATION retained_intron ENSMUSG00000002413 Braf ENSMUST00000167169 - NO_TRANSLATION retained_intron ENSMUSG00000002413 Braf ENSMUST00000002487 ENSMUSP00000002487 TRANSLATION protein_coding - CCDS39463.1 1 804.0 16.0 11.25 0.0 351.6 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000002413 Braf ENSMUST00000101497 ENSMUSP00000099036 TRANSLATION protein_coding start - 5 750.0 16.0 11.25 0.0 351.6 0.0 -4,-5 0.0917 12 -2.0 MINOR ENSMUSG00000095771 Igkv14-111 ENSMUST00000103320 ENSMUSP00000100121 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.2 0.0 61.5 0.0 2,-2 0.8234 2 -2.0 PRINCIPAL:1 ENSMUSG00000038074 Fkbp14 ENSMUST00000143312 - NO_TRANSLATION retained_intron ENSMUSG00000038074 Fkbp14 ENSMUST00000155047 ENSMUSP00000114521 TRANSLATION nonsense_mediated_decay - - 1 118.0 0.0 2.5 0.0 80.8 0.0 2,-3 0.0008 1 -2.0 MINOR ENSMUSG00000038074 Fkbp14 ENSMUST00000154907 - NO_TRANSLATION retained_intron ENSMUSG00000038074 Fkbp14 ENSMUST00000123832 - NO_TRANSLATION retained_intron ENSMUSG00000038074 Fkbp14 ENSMUST00000117375 ENSMUSP00000112526 TRANSLATION protein_coding - - 1 117.0 5.0 2.75 0.0 83.4 0.0 -4,-5 0.0005 1 10.16 MINOR ENSMUSG00000038074 Fkbp14 ENSMUST00000046520 ENSMUSP00000046070 TRANSLATION protein_coding - CCDS20157.1 1 211.0 5.0 4.5 11.0 139.1 0.0 2,-3 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000038074 Fkbp14 ENSMUST00000141757 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067714 Lpar5 ENSMUST00000088292 ENSMUSP00000085630 TRANSLATION protein_coding - - 1 372.0 0.0 1.0 1.2 134.3 5.0 -4,-7 0.7861 - 13.0 PRINCIPAL:1 ENSMUSG00000067714 Lpar5 ENSMUST00000140346 ENSMUSP00000119904 TRANSLATION protein_coding stop - 2 372.0 0.0 1.0 1.2 134.3 5.0 -4,-7 0.7861 - -2.0 MINOR ENSMUSG00000029862 Clcn1 ENSMUST00000165780 ENSMUSP00000130550 TRANSLATION nonsense_mediated_decay start - 5 229.0 0.0 3.75 0.0 69.4 12.0 -4,-6 0.0031 1 -2.0 MINOR ENSMUSG00000029862 Clcn1 ENSMUST00000169024 ENSMUSP00000130968 TRANSLATION nonsense_mediated_decay start - 5 262.0 0.0 4.35 0.0 77.5 13.0 -4,-6 0.0034 1 -2.0 MINOR ENSMUSG00000029862 Clcn1 ENSMUST00000163235 ENSMUSP00000132387 TRANSLATION nonsense_mediated_decay start - 5 104.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029862 Clcn1 ENSMUST00000114684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029862 Clcn1 ENSMUST00000238845 ENSMUSP00000158998 TRANSLATION protein_coding stop - - 326.0 0.0 5.35 0.0 119.7 13.0 -4,-6 0.0031 1 -2.0 MINOR ENSMUSG00000029862 Clcn1 ENSMUST00000169902 - NO_TRANSLATION retained_intron ENSMUSG00000029862 Clcn1 ENSMUST00000163936 ENSMUSP00000130148 TRANSLATION protein_coding start - 5 923.0 0.0 14.48 0.0 231.7 20.0 -4,-6 0.0245 3 -2.0 MINOR ENSMUSG00000029862 Clcn1 ENSMUST00000164091 ENSMUSP00000131354 TRANSLATION nonsense_mediated_decay - - 5 258.0 0.0 3.75 0.0 69.4 12.0 -4,-6 0.0031 1 -2.0 MINOR ENSMUSG00000029862 Clcn1 ENSMUST00000168660 ENSMUSP00000126045 TRANSLATION nonsense_mediated_decay start - 2 257.0 0.0 4.35 0.0 78.3 13.0 -4,-5 0.0034 1 -2.0 MINOR ENSMUSG00000029862 Clcn1 ENSMUST00000031894 ENSMUSP00000031894 TRANSLATION protein_coding - CCDS39471.1 1 994.0 0.0 15.48 1.0 285.5 21.0 -4,-6 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000029862 Clcn1 ENSMUST00000170028 ENSMUSP00000132154 TRANSLATION nonsense_mediated_decay start - 5 289.0 0.0 3.75 0.0 69.4 12.0 -4,-6 0.0053 1 -2.0 MINOR ENSMUSG00000029697 Fezf1 ENSMUST00000031709 ENSMUSP00000031709 TRANSLATION protein_coding - CCDS51725.1 1 475.0 24.0 3.0 3.0 125.7 0.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000055027 Smyd1 ENSMUST00000074301 ENSMUSP00000073911 TRANSLATION protein_coding - CCDS51805.1 1 490.0 26.0 10.16 16.8 80.2 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:4 ENSMUSG00000055027 Smyd1 ENSMUST00000173730 ENSMUSP00000134399 TRANSLATION protein_coding start - 5 58.0 0.0 1.33 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000055027 Smyd1 ENSMUST00000173297 ENSMUSP00000133878 TRANSLATION protein_coding - - 5 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000055027 Smyd1 ENSMUST00000129630 ENSMUSP00000133300 TRANSLATION protein_coding - - 1 69.0 3.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000055027 Smyd1 ENSMUST00000114188 ENSMUSP00000109826 TRANSLATION protein_coding - - 5 456.0 23.0 9.16 0.0 73.2 0.0 -4,-5 0.0093 15 10.004 MINOR ENSMUSG00000055027 Smyd1 ENSMUST00000114186 ENSMUSP00000109824 TRANSLATION protein_coding - CCDS20227.2 1 477.0 26.0 9.66 16.8 83.2 0.0 -4,-5 0.975 15 16.998 ALTERNATIVE:1 ENSMUSG00000004268 Emg1 ENSMUST00000125795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004268 Emg1 ENSMUST00000204334 - NO_TRANSLATION retained_intron ENSMUSG00000004268 Emg1 ENSMUST00000141251 - NO_TRANSLATION retained_intron ENSMUSG00000004268 Emg1 ENSMUST00000142187 - NO_TRANSLATION retained_intron ENSMUSG00000004268 Emg1 ENSMUST00000004379 ENSMUSP00000004379 TRANSLATION protein_coding - CCDS20524.1 1 244.0 14.0 5.1 13.3 0.0 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000004268 Emg1 ENSMUST00000203238 ENSMUSP00000144730 TRANSLATION protein_coding stop - 3 122.0 0.0 2.1 0.0 0.0 0.0 -4,-7 0.006 3 -2.0 MINOR ENSMUSG00000091012 Vmn1r34 ENSMUST00000228647 ENSMUSP00000153720 TRANSLATION protein_coding - CCDS51802.1 - 309.0 0.0 0.0 0.4 179.4 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091012 Vmn1r34 ENSMUST00000226910 ENSMUSP00000154378 TRANSLATION protein_coding - CCDS51802.1 - 309.0 0.0 0.0 0.4 179.4 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091012 Vmn1r34 ENSMUST00000074381 ENSMUSP00000132900 TRANSLATION protein_coding - CCDS51802.1 - 309.0 0.0 0.0 0.4 179.4 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091012 Vmn1r34 ENSMUST00000227332 ENSMUSP00000154593 TRANSLATION protein_coding - CCDS51802.1 - 309.0 0.0 0.0 0.4 179.4 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091012 Vmn1r34 ENSMUST00000228498 ENSMUSP00000154665 TRANSLATION protein_coding - CCDS51802.1 - 309.0 0.0 0.0 0.4 179.4 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091012 Vmn1r34 ENSMUST00000226999 ENSMUSP00000153875 TRANSLATION protein_coding - CCDS51802.1 - 309.0 0.0 0.0 0.4 179.4 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091012 Vmn1r34 ENSMUST00000226262 ENSMUSP00000154622 TRANSLATION protein_coding - CCDS51802.1 - 309.0 0.0 0.0 0.4 179.4 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000029797 Sspo ENSMUST00000212740 ENSMUSP00000148570 TRANSLATION protein_coding - - 5 5135.0 69.0 17.8835 0.0 1889.8 0.0 3,-1 0.9009 - 14.0 ALTERNATIVE:2 ENSMUSG00000029797 Sspo ENSMUST00000169350 ENSMUSP00000131401 TRANSLATION protein_coding - CCDS57420.1 5 5144.0 69.0 17.8835 0.0 1889.8 0.0 3,-1 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000029797 Sspo ENSMUST00000185370 ENSMUSP00000139484 TRANSLATION nonsense_mediated_decay start - 1 933.0 17.0 4.419 0.0 377.8 0.0 -4,-6 0.0066 - -2.0 MINOR ENSMUSG00000029797 Sspo ENSMUST00000189910 - NO_TRANSLATION retained_intron ENSMUSG00000029797 Sspo ENSMUST00000188970 ENSMUSP00000140642 TRANSLATION protein_coding start/stop - 3 179.0 0.0 0.948 0.0 65.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000030313 Dennd5b ENSMUST00000150436 - NO_TRANSLATION retained_intron ENSMUSG00000030313 Dennd5b ENSMUST00000111557 ENSMUSP00000107182 TRANSLATION protein_coding - CCDS20714.2 5 1274.0 0.0 5.77 9.9 502.8 0.0 -4,-2 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000030313 Dennd5b ENSMUST00000204030 - NO_TRANSLATION retained_intron ENSMUSG00000030313 Dennd5b ENSMUST00000204583 - NO_TRANSLATION retained_intron ENSMUSG00000030313 Dennd5b ENSMUST00000129539 - NO_TRANSLATION retained_intron ENSMUSG00000030313 Dennd5b ENSMUST00000145555 ENSMUSP00000127731 TRANSLATION protein_coding stop - 3 54.0 0.0 0.0 0.0 45.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030313 Dennd5b ENSMUST00000127727 ENSMUSP00000123568 TRANSLATION protein_coding stop - 2 146.0 0.0 0.0 0.0 58.7 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000030291 Med21 ENSMUST00000111650 ENSMUSP00000107277 TRANSLATION protein_coding - - 2 90.0 0.0 1.62 0.8 69.7 0.0 -4,-5 0.0021 - 8.136 MINOR ENSMUSG00000030291 Med21 ENSMUST00000075077 - NO_TRANSLATION retained_intron ENSMUSG00000030291 Med21 ENSMUST00000203416 - NO_TRANSLATION retained_intron ENSMUSG00000030291 Med21 ENSMUST00000032429 ENSMUSP00000032429 TRANSLATION protein_coding - CCDS20700.1 1 144.0 0.0 2.62 28.2 94.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000030291 Med21 ENSMUST00000204040 ENSMUSP00000145512 TRANSLATION nonsense_mediated_decay - CCDS20700.1 3 144.0 0.0 2.62 28.2 94.5 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000030291 Med21 ENSMUST00000125539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030291 Med21 ENSMUST00000134387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091541 Vmn1r9 ENSMUST00000171186 ENSMUSP00000125762 TRANSLATION protein_coding - CCDS51793.1 - 299.0 0.0 0.0 1.3 176.5 5.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000091541 Vmn1r9 ENSMUST00000228714 ENSMUSP00000153808 TRANSLATION protein_coding - CCDS51793.1 - 299.0 0.0 0.0 1.3 176.5 5.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000091541 Vmn1r9 ENSMUST00000227399 ENSMUSP00000154215 TRANSLATION protein_coding - CCDS51793.1 - 299.0 0.0 0.0 1.3 176.5 5.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000030284 Creld1 ENSMUST00000032422 ENSMUSP00000032422 TRANSLATION protein_coding - CCDS20423.1 1 420.0 13.0 6.752 10.3 94.5 0.0 4,-1 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000030284 Creld1 ENSMUST00000249331 ENSMUSP00000159700 TRANSLATION protein_coding - - - 337.0 7.0 5.65 0.0 60.0 0.0 4,-1 0.0029 6 9.606 MINOR ENSMUSG00000030284 Creld1 ENSMUST00000249330 ENSMUSP00000159699 TRANSLATION protein_coding - - - 378.0 13.0 6.686 0.0 94.5 0.0 4,-1 0.1093 9 17.868 MINOR ENSMUSG00000030284 Creld1 ENSMUST00000135852 - NO_TRANSLATION retained_intron ENSMUSG00000030284 Creld1 ENSMUST00000129125 - NO_TRANSLATION retained_intron ENSMUSG00000030284 Creld1 ENSMUST00000249329 ENSMUSP00000159698 TRANSLATION nonsense_mediated_decay - - - 240.0 0.0 3.35 1.0 30.4 0.0 4,-1 0.0122 4 -2.0 MINOR ENSMUSG00000030284 Creld1 ENSMUST00000156764 - NO_TRANSLATION retained_intron ENSMUSG00000030284 Creld1 ENSMUST00000147932 - NO_TRANSLATION retained_intron ENSMUSG00000030284 Creld1 ENSMUST00000204920 - NO_TRANSLATION retained_intron ENSMUSG00000068234 Vmn1r44 ENSMUST00000089420 ENSMUSP00000100706 TRANSLATION protein_coding - CCDS39558.1 - 310.0 0.0 0.0 0.1 486.2 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068234 Vmn1r44 ENSMUST00000226120 ENSMUSP00000154014 TRANSLATION protein_coding - - - 167.0 0.0 0.0 0.0 281.9 3.0 -4,-7 0.0055 - 0.0 MINOR ENSMUSG00000068234 Vmn1r44 ENSMUST00000227888 ENSMUSP00000153985 TRANSLATION protein_coding - - - 167.0 0.0 0.0 0.0 281.9 3.0 -4,-7 0.0055 - 0.0 MINOR ENSMUSG00000068234 Vmn1r44 ENSMUST00000227456 ENSMUSP00000153772 TRANSLATION protein_coding - CCDS39558.1 - 310.0 0.0 0.0 0.1 486.2 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068234 Vmn1r44 ENSMUST00000226171 ENSMUSP00000154711 TRANSLATION protein_coding - - - 167.0 0.0 0.0 0.0 281.9 3.0 -4,-7 0.0055 - 0.0 MINOR ENSMUSG00000068234 Vmn1r44 ENSMUST00000227747 ENSMUSP00000154656 TRANSLATION protein_coding - - - 167.0 0.0 0.0 0.0 281.9 3.0 -4,-7 0.0055 - 0.0 MINOR ENSMUSG00000068234 Vmn1r44 ENSMUST00000227047 ENSMUSP00000153999 TRANSLATION protein_coding - CCDS39558.1 - 310.0 0.0 0.0 0.1 486.2 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068234 Vmn1r44 ENSMUST00000226760 ENSMUSP00000154174 TRANSLATION protein_coding - CCDS39558.1 - 310.0 0.0 0.0 0.1 486.2 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068234 Vmn1r44 ENSMUST00000227625 ENSMUSP00000154294 TRANSLATION protein_coding - - - 167.0 0.0 0.0 0.0 281.9 3.0 -4,-7 0.0055 - 0.0 MINOR ENSMUSG00000068234 Vmn1r44 ENSMUST00000204656 ENSMUSP00000145135 TRANSLATION protein_coding - CCDS39558.1 2 310.0 0.0 0.0 0.1 486.2 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068234 Vmn1r44 ENSMUST00000228183 ENSMUSP00000154163 TRANSLATION protein_coding - - - 167.0 0.0 0.0 0.0 281.9 3.0 -4,-7 0.0055 - 0.0 MINOR ENSMUSG00000068234 Vmn1r44 ENSMUST00000228700 ENSMUSP00000154809 TRANSLATION protein_coding - CCDS39558.1 - 310.0 0.0 0.0 0.1 486.2 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068234 Vmn1r44 ENSMUST00000226345 ENSMUSP00000154318 TRANSLATION protein_coding - CCDS39558.1 - 310.0 0.0 0.0 0.1 486.2 6.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030092 Cntn6 ENSMUST00000161413 - NO_TRANSLATION retained_intron ENSMUSG00000030092 Cntn6 ENSMUST00000089215 ENSMUSP00000086623 TRANSLATION protein_coding - CCDS20394.1 1 1028.0 0.0 20.33 7.2 354.5 0.0 4,-1 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000030092 Cntn6 ENSMUST00000161070 ENSMUSP00000124714 TRANSLATION protein_coding - - 5 956.0 0.0 18.75 3.2 317.8 0.0 -4,-5 0.3216 19 7.346 MINOR ENSMUSG00000030092 Cntn6 ENSMUST00000162872 ENSMUSP00000124025 TRANSLATION protein_coding - CCDS20394.1 1 1028.0 0.0 20.33 7.2 354.5 0.0 4,-1 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000030092 Cntn6 ENSMUST00000161446 ENSMUSP00000124531 TRANSLATION protein_coding stop - 5 36.0 0.0 0.5 0.0 0.0 0.0 4,-1 0.0008 - -2.0 MINOR ENSMUSG00000067702 Tuba3a ENSMUST00000088246 ENSMUSP00000085580 TRANSLATION protein_coding - CCDS39640.1 1 450.0 27.0 4.0 36.9 400.2 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000029685 Asb15 ENSMUST00000117688 ENSMUSP00000112965 TRANSLATION protein_coding - CCDS19943.1 5 583.0 0.0 4.106 0.0 157.1 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000029685 Asb15 ENSMUST00000031696 ENSMUSP00000031696 TRANSLATION protein_coding - CCDS19943.1 1 583.0 0.0 4.106 0.0 157.1 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000119940 Gm56924 ENSMUST00000240724 ENSMUSP00000159517 TRANSLATION protein_coding - - - 154.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.5847 2 0.0 PRINCIPAL:1 ENSMUSG00000029761 Cald1 ENSMUST00000123823 ENSMUSP00000117064 TRANSLATION protein_coding start/stop - 3 211.0 0.0 0.0 0.0 98.6 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000029761 Cald1 ENSMUST00000132331 - NO_TRANSLATION retained_intron ENSMUSG00000029761 Cald1 ENSMUST00000115027 ENSMUSP00000110679 TRANSLATION protein_coding - - 5 768.0 0.0 0.0 0.0 479.7 0.0 -4,-5 0.0252 33 0.0 MINOR ENSMUSG00000029761 Cald1 ENSMUST00000154182 - NO_TRANSLATION retained_intron ENSMUSG00000029761 Cald1 ENSMUST00000201956 - NO_TRANSLATION retained_intron ENSMUSG00000029761 Cald1 ENSMUST00000201024 - NO_TRANSLATION retained_intron ENSMUSG00000029761 Cald1 ENSMUST00000079391 ENSMUSP00000078362 TRANSLATION protein_coding - - 5 534.0 0.0 0.0 10.3 601.9 0.0 -4,-5 0.879 30 5.0 ALTERNATIVE:1 ENSMUSG00000029761 Cald1 ENSMUST00000115026 ENSMUSP00000110678 TRANSLATION protein_coding - CCDS85029.1 5 536.0 0.0 0.0 9.1 602.3 0.0 -4,-5 1.0 32 3.947 PRINCIPAL:3 ENSMUSG00000029761 Cald1 ENSMUST00000146685 - NO_TRANSLATION retained_intron ENSMUSG00000029761 Cald1 ENSMUST00000126181 ENSMUSP00000121911 TRANSLATION protein_coding start/stop - 5 137.0 0.0 0.0 0.0 69.4 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000029761 Cald1 ENSMUST00000155714 - NO_TRANSLATION retained_intron ENSMUSG00000029761 Cald1 ENSMUST00000142512 ENSMUSP00000122926 TRANSLATION protein_coding stop - 3 253.0 0.0 0.0 0.0 135.1 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000029761 Cald1 ENSMUST00000031775 ENSMUSP00000031775 TRANSLATION protein_coding - - 5 554.0 0.0 0.0 1.0 598.0 0.0 -4,-2 0.1202 29 0.666 MINOR ENSMUSG00000029761 Cald1 ENSMUST00000136907 ENSMUSP00000121213 TRANSLATION protein_coding start/stop - 1 354.0 0.0 0.0 0.0 53.2 0.0 -4,-5 0.0005 13 -2.0 MINOR ENSMUSG00000029761 Cald1 ENSMUST00000149009 ENSMUSP00000138368 TRANSLATION nonsense_mediated_decay - - 5 534.0 0.0 0.0 0.0 562.9 0.0 -4,-2 0.2228 28 -2.0 MINOR ENSMUSG00000029761 Cald1 ENSMUST00000115021 ENSMUSP00000110673 TRANSLATION protein_coding - CCDS39456.1 1 530.0 0.0 0.0 4.6 602.3 0.0 -4,-2 0.7807 33 2.495 MINOR ENSMUSG00000029761 Cald1 ENSMUST00000127055 - NO_TRANSLATION retained_intron ENSMUSG00000029761 Cald1 ENSMUST00000142716 ENSMUSP00000116247 TRANSLATION protein_coding start/stop - 5 274.0 0.0 0.0 0.0 199.8 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000068587 Mgam ENSMUST00000238599 ENSMUSP00000158794 TRANSLATION protein_coding - - - 3616.0 5.0 67.8785 0.1 2564.8 1.0 -1,-5 1.0 63 17.0 PRINCIPAL:1 ENSMUSG00000068587 Mgam ENSMUST00000202966 ENSMUSP00000144680 TRANSLATION protein_coding start/stop - 5 986.0 4.0 23.08 0.0 634.2 0.0 -4,-5 0.0292 24 -2.0 MINOR ENSMUSG00000068587 Mgam ENSMUST00000071535 ENSMUSP00000071466 TRANSLATION protein_coding - CCDS51755.1 1 1827.0 4.0 41.73 0.0 1307.4 1.0 -1,-5 0.25 43 4.0 MINOR ENSMUSG00000068587 Mgam ENSMUST00000202775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068587 Mgam ENSMUST00000202779 ENSMUSP00000144627 TRANSLATION protein_coding - - 1 1200.0 4.0 27.195 0.0 841.8 0.0 -4,-5 0.0914 27 4.0 MINOR ENSMUSG00000068587 Mgam ENSMUST00000202311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068587 Mgam ENSMUST00000202636 ENSMUSP00000144652 TRANSLATION protein_coding stop - 1 316.0 0.0 7.1 0.0 188.6 0.0 -4,-5 0.0013 6 -2.0 MINOR ENSMUSG00000068587 Mgam ENSMUST00000201148 ENSMUSP00000143946 TRANSLATION protein_coding - - 1 1827.0 4.0 41.73 0.0 1307.4 1.0 -1,-5 0.1782 43 4.0 MINOR ENSMUSG00000029922 Mkrn1 ENSMUST00000114823 ENSMUSP00000110471 TRANSLATION protein_coding - CCDS80528.1 1 417.0 19.0 4.6 7.6 219.9 0.0 -4,-5 1.0 5 14.734 PRINCIPAL:2 ENSMUSG00000029922 Mkrn1 ENSMUST00000114822 ENSMUSP00000110470 TRANSLATION protein_coding - - 1 196.0 8.0 0.6 0.0 50.0 0.0 -2,-4 0.0 3 0.8 MINOR ENSMUSG00000029922 Mkrn1 ENSMUST00000150575 ENSMUSP00000121563 TRANSLATION protein_coding start - 3 207.0 8.0 2.25 0.0 31.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000029922 Mkrn1 ENSMUST00000051671 ENSMUSP00000084244 TRANSLATION protein_coding - - 1 329.0 18.0 2.35 0.0 100.8 0.0 -2,-4 0.0027 4 7.568 MINOR ENSMUSG00000029922 Mkrn1 ENSMUST00000122996 ENSMUSP00000115231 TRANSLATION protein_coding start - 1 344.0 17.0 2.35 0.0 77.3 0.0 -4,-6 0.0024 4 -2.0 MINOR ENSMUSG00000029922 Mkrn1 ENSMUST00000031985 ENSMUSP00000031985 TRANSLATION protein_coding - CCDS20022.1 1 481.0 20.0 4.6 0.1 243.4 0.0 -2,-4 0.2605 5 14.0 ALTERNATIVE:2 ENSMUSG00000029922 Mkrn1 ENSMUST00000146785 ENSMUSP00000123440 TRANSLATION protein_coding start/stop - 3 180.0 8.0 0.6 0.0 47.1 0.0 -2,-5 0.0 3 -2.0 MINOR ENSMUSG00000029922 Mkrn1 ENSMUST00000122874 - NO_TRANSLATION retained_intron ENSMUSG00000061977 Tas2r104 ENSMUST00000072404 ENSMUSP00000072237 TRANSLATION protein_coding - CCDS20611.1 - 302.0 0.0 0.0 1.2 333.9 0.0 -1,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000030177 Ccdc77 ENSMUST00000127146 ENSMUSP00000120896 TRANSLATION nonsense_mediated_decay - - 1 157.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0113 2 -2.0 MINOR ENSMUSG00000030177 Ccdc77 ENSMUST00000144131 ENSMUSP00000127096 TRANSLATION nonsense_mediated_decay - - 5 136.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0102 1 -2.0 MINOR ENSMUSG00000030177 Ccdc77 ENSMUST00000112703 ENSMUSP00000108323 TRANSLATION protein_coding - - 5 471.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0784 4 0.0 MINOR ENSMUSG00000030177 Ccdc77 ENSMUST00000123114 - NO_TRANSLATION retained_intron ENSMUSG00000030177 Ccdc77 ENSMUST00000163827 ENSMUSP00000131970 TRANSLATION protein_coding stop - 3 200.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0148 3 -2.0 MINOR ENSMUSG00000030177 Ccdc77 ENSMUST00000146667 ENSMUSP00000114664 TRANSLATION protein_coding stop - 3 91.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.018 - -2.0 MINOR ENSMUSG00000030177 Ccdc77 ENSMUST00000136829 ENSMUSP00000126554 TRANSLATION nonsense_mediated_decay - - 5 154.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0194 1 -2.0 MINOR ENSMUSG00000030177 Ccdc77 ENSMUST00000137271 - NO_TRANSLATION retained_intron ENSMUSG00000030177 Ccdc77 ENSMUST00000153435 - NO_TRANSLATION retained_intron ENSMUSG00000030177 Ccdc77 ENSMUST00000032283 ENSMUSP00000032283 TRANSLATION protein_coding - CCDS20481.1 1 489.0 0.0 0.0 7.1 0.0 0.0 -4,-7 1.0 4 2.0 PRINCIPAL:1 ENSMUSG00000030162 Olr1 ENSMUST00000183258 ENSMUSP00000138228 TRANSLATION protein_coding - CCDS80619.1 1 155.0 0.0 3.8 0.0 57.3 0.0 -4,-5 0.0834 - 6.0 MINOR ENSMUSG00000030162 Olr1 ENSMUST00000203564 ENSMUSP00000144833 TRANSLATION protein_coding start/stop - 5 140.0 0.0 3.75 0.0 53.0 0.0 -4,-5 0.0098 - -2.0 MINOR ENSMUSG00000030162 Olr1 ENSMUST00000162815 ENSMUSP00000124660 TRANSLATION protein_coding stop - 3 97.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030162 Olr1 ENSMUST00000182784 ENSMUSP00000138588 TRANSLATION protein_coding - CCDS80620.1 1 189.0 0.0 4.8 0.0 57.3 1.0 -4,-6 0.0984 - 6.0 MINOR ENSMUSG00000030162 Olr1 ENSMUST00000032265 ENSMUSP00000032265 TRANSLATION protein_coding - CCDS20588.1 1 363.0 0.0 8.63 0.0 57.3 1.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000005667 Mthfd2 ENSMUST00000204472 ENSMUSP00000145222 TRANSLATION protein_coding stop - 3 97.0 1.0 1.75 0.0 72.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000005667 Mthfd2 ENSMUST00000139802 - NO_TRANSLATION retained_intron ENSMUSG00000005667 Mthfd2 ENSMUST00000141044 - NO_TRANSLATION retained_intron ENSMUSG00000005667 Mthfd2 ENSMUST00000203375 - NO_TRANSLATION retained_intron ENSMUSG00000005667 Mthfd2 ENSMUST00000203847 ENSMUSP00000145266 TRANSLATION nonsense_mediated_decay - - 5 123.0 1.0 1.24 0.0 50.4 0.0 1,4 0.0008 - -2.0 MINOR ENSMUSG00000005667 Mthfd2 ENSMUST00000141193 - NO_TRANSLATION retained_intron ENSMUSG00000005667 Mthfd2 ENSMUST00000005810 ENSMUSP00000005810 TRANSLATION protein_coding - CCDS20277.1 1 350.0 22.0 7.5 8.9 349.9 0.0 1,4 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000060699 Vmn1r35 ENSMUST00000071414 ENSMUSP00000071362 TRANSLATION protein_coding - CCDS20213.1 - 296.0 0.0 0.0 0.1 180.2 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060699 Vmn1r35 ENSMUST00000227346 ENSMUSP00000153976 TRANSLATION protein_coding - - - 129.0 0.0 0.0 0.0 86.8 2.0 -1,-5 0.0028 - 0.396 MINOR ENSMUSG00000060699 Vmn1r35 ENSMUST00000227354 ENSMUSP00000153959 TRANSLATION protein_coding - CCDS20213.1 - 296.0 0.0 0.0 0.1 180.2 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060699 Vmn1r35 ENSMUST00000227749 ENSMUSP00000154707 TRANSLATION protein_coding - CCDS20213.1 - 296.0 0.0 0.0 0.1 180.2 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060699 Vmn1r35 ENSMUST00000227961 ENSMUSP00000153798 TRANSLATION protein_coding - - - 129.0 0.0 0.0 0.0 86.8 2.0 -1,-5 0.0028 - 0.396 MINOR ENSMUSG00000030062 Rpn1 ENSMUST00000032143 ENSMUSP00000032143 TRANSLATION protein_coding - CCDS20332.1 1 608.0 0.0 10.25 4.8 483.7 0.0 3,-2 1.0 27 14.0 PRINCIPAL:1 ENSMUSG00000030062 Rpn1 ENSMUST00000204164 - NO_TRANSLATION retained_intron ENSMUSG00000030062 Rpn1 ENSMUST00000204024 - NO_TRANSLATION retained_intron ENSMUSG00000030062 Rpn1 ENSMUST00000204838 ENSMUSP00000144711 TRANSLATION nonsense_mediated_decay start - 5 90.0 0.0 1.0 0.0 0.0 0.0 -2,-5 0.0 3 -2.0 MINOR ENSMUSG00000030062 Rpn1 ENSMUST00000203813 - NO_TRANSLATION retained_intron ENSMUSG00000076467 Trbv13-1 ENSMUST00000194399 ENSMUSP00000142225 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 51.8 0.0 4,-2 0.824 - -2.0 PRINCIPAL:1 ENSMUSG00000050732 Vamp8 ENSMUST00000059983 ENSMUSP00000059501 TRANSLATION protein_coding - CCDS39514.1 1 101.0 0.0 2.5 13.1 111.8 1.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000050732 Vamp8 ENSMUST00000142613 ENSMUSP00000145955 TRANSLATION protein_coding - - 1 75.0 0.0 1.75 0.0 90.8 1.0 -4,-5 0.0015 3 8.94 MINOR ENSMUSG00000047228 A2ml1 ENSMUST00000203129 - NO_TRANSLATION retained_intron ENSMUSG00000047228 A2ml1 ENSMUST00000060574 ENSMUSP00000059426 TRANSLATION protein_coding - CCDS39651.1 1 1456.0 2.0 18.479 2.1 580.7 0.0 3,-2 1.0 34 15.0 PRINCIPAL:1 ENSMUSG00000047228 A2ml1 ENSMUST00000203889 - NO_TRANSLATION retained_intron ENSMUSG00000047228 A2ml1 ENSMUST00000203291 - NO_TRANSLATION retained_intron ENSMUSG00000047228 A2ml1 ENSMUST00000205167 - NO_TRANSLATION retained_intron ENSMUSG00000039578 Ccser1 ENSMUST00000126214 ENSMUSP00000122894 TRANSLATION protein_coding - CCDS51800.1 5 895.0 0.0 0.0 8.3 0.0 0.0 -4,-1 1.0 7 3.0 PRINCIPAL:1 ENSMUSG00000039578 Ccser1 ENSMUST00000067307 ENSMUSP00000067639 TRANSLATION protein_coding start - 1 231.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0221 - -2.0 MINOR ENSMUSG00000039578 Ccser1 ENSMUST00000045522 ENSMUSP00000040251 TRANSLATION protein_coding - CCDS51800.1 1 895.0 0.0 0.0 8.3 0.0 0.0 -4,-1 1.0 7 3.0 PRINCIPAL:1 ENSMUSG00000039578 Ccser1 ENSMUST00000204337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039578 Ccser1 ENSMUST00000145554 - NO_TRANSLATION retained_intron ENSMUSG00000039578 Ccser1 ENSMUST00000131989 - NO_TRANSLATION retained_intron ENSMUSG00000039578 Ccser1 ENSMUST00000203112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039578 Ccser1 ENSMUST00000232648 ENSMUSP00000156135 TRANSLATION protein_coding start - - 58.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0145 - -2.0 MINOR ENSMUSG00000039578 Ccser1 ENSMUST00000133478 - NO_TRANSLATION retained_intron ENSMUSG00000039578 Ccser1 ENSMUST00000203850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039578 Ccser1 ENSMUST00000134710 ENSMUSP00000122633 TRANSLATION protein_coding start - 2 168.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0137 - -2.0 MINOR ENSMUSG00000039578 Ccser1 ENSMUST00000147576 - NO_TRANSLATION retained_intron ENSMUSG00000053217 Tas2r136 ENSMUST00000065532 ENSMUSP00000070791 TRANSLATION protein_coding - CCDS20622.1 - 327.0 0.0 0.6 0.1 220.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063694 Cycs ENSMUST00000161401 ENSMUSP00000124523 TRANSLATION protein_coding - CCDS20131.1 1 105.0 27.0 2.0 36.9 0.0 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000063694 Cycs ENSMUST00000077766 - NO_TRANSLATION retained_intron ENSMUSG00000029782 Tmem209 ENSMUST00000064330 ENSMUSP00000067667 TRANSLATION protein_coding - - 1 438.0 0.0 0.0 0.0 308.7 4.0 -4,-7 0.0048 11 0.0 MINOR ENSMUSG00000029782 Tmem209 ENSMUST00000202269 - NO_TRANSLATION retained_intron ENSMUSG00000029782 Tmem209 ENSMUST00000154547 ENSMUSP00000145248 TRANSLATION protein_coding stop - 2 66.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029782 Tmem209 ENSMUST00000150480 - NO_TRANSLATION retained_intron ENSMUSG00000029782 Tmem209 ENSMUST00000151187 ENSMUSP00000138232 TRANSLATION nonsense_mediated_decay - CCDS85026.1 1 403.0 0.0 0.0 0.0 423.0 0.0 -4,-6 0.0261 10 -2.0 MINOR ENSMUSG00000029782 Tmem209 ENSMUST00000115157 ENSMUSP00000110810 TRANSLATION protein_coding - CCDS80511.1 1 560.0 0.0 0.0 22.0 530.5 4.0 -4,-7 0.995 13 6.0 ALTERNATIVE:1 ENSMUSG00000029782 Tmem209 ENSMUST00000102991 ENSMUSP00000100056 TRANSLATION protein_coding - - 5 519.0 0.0 0.0 1.0 362.0 4.0 -4,-7 0.0272 12 0.0 MINOR ENSMUSG00000029782 Tmem209 ENSMUST00000148638 ENSMUSP00000115567 TRANSLATION protein_coding stop - 2 140.0 0.0 0.0 0.0 39.7 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000029782 Tmem209 ENSMUST00000138823 ENSMUSP00000138292 TRANSLATION nonsense_mediated_decay - CCDS19972.1 5 561.0 0.0 0.0 22.0 530.5 4.0 -4,-7 1.0 13 -2.0 MINOR ENSMUSG00000029782 Tmem209 ENSMUST00000115160 ENSMUSP00000110813 TRANSLATION protein_coding - CCDS19972.1 1 561.0 0.0 0.0 22.0 530.5 4.0 -4,-7 1.0 13 6.0 PRINCIPAL:4 ENSMUSG00000000439 Mkrn2 ENSMUST00000204409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000439 Mkrn2 ENSMUST00000000449 ENSMUSP00000000449 TRANSLATION protein_coding - CCDS39600.1 1 416.0 24.0 4.198 9.5 105.4 0.0 -4,-7 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000000439 Mkrn2 ENSMUST00000205248 - NO_TRANSLATION retained_intron ENSMUSG00000030361 Klrb1a ENSMUST00000204819 ENSMUSP00000145519 TRANSLATION protein_coding stop - 5 225.0 0.0 4.3495 0.0 78.2 2.0 -4,-7 0.0744 - -2.0 MINOR ENSMUSG00000030361 Klrb1a ENSMUST00000032512 ENSMUSP00000032512 TRANSLATION protein_coding - CCDS20574.2 1 233.0 0.0 4.3495 0.0 78.2 2.0 -4,-7 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000030361 Klrb1a ENSMUST00000171306 ENSMUSP00000132390 TRANSLATION protein_coding - CCDS51918.1 1 200.0 0.0 3.9495 0.0 78.2 0.0 -4,-7 0.0986 - 7.202 ALTERNATIVE:2 ENSMUSG00000030361 Klrb1a ENSMUST00000240723 ENSMUSP00000159516 TRANSLATION protein_coding - - - 227.0 0.0 4.1515 0.0 78.2 2.0 -4,-7 0.0779 - 7.604 ALTERNATIVE:2 ENSMUSG00000030361 Klrb1a ENSMUST00000203275 ENSMUSP00000145086 TRANSLATION protein_coding stop - 5 216.0 0.0 4.1515 0.4 78.2 2.0 -4,-7 0.0434 - -2.0 MINOR ENSMUSG00000030361 Klrb1a ENSMUST00000203150 ENSMUSP00000144707 TRANSLATION protein_coding stop - 5 83.0 0.0 0.7855 0.0 0.0 2.0 -4,-7 0.0046 - -2.0 MINOR ENSMUSG00000046080 Clec9a ENSMUST00000088075 ENSMUSP00000085394 TRANSLATION protein_coding - CCDS39658.1 1 238.0 6.0 3.695 4.6 59.0 3.0 -4,-6 1.0 1 19.4 PRINCIPAL:1 ENSMUSG00000046080 Clec9a ENSMUST00000058352 ENSMUSP00000056625 TRANSLATION protein_coding - CCDS57454.1 1 264.0 6.0 3.995 0.0 59.0 3.0 -4,-5 0.1425 1 18.0 MINOR ENSMUSG00000046080 Clec9a ENSMUST00000204860 ENSMUSP00000144990 TRANSLATION protein_coding stop - 1 148.0 0.0 0.695 0.0 0.0 3.0 -4,-5 0.0026 1 -2.0 MINOR ENSMUSG00000046080 Clec9a ENSMUST00000164513 ENSMUSP00000128622 TRANSLATION protein_coding - CCDS57455.1 1 237.0 6.0 3.62 0.0 59.0 0.0 -4,-5 0.2197 1 17.25 MINOR ENSMUSG00000030145 Zfp248 ENSMUST00000189168 - NO_TRANSLATION retained_intron ENSMUSG00000030145 Zfp248 ENSMUST00000161519 ENSMUSP00000124539 TRANSLATION protein_coding - - 1 475.0 28.0 0.6 0.1 172.7 0.0 -4,-5 0.0994 - 13.392 MINOR ENSMUSG00000030145 Zfp248 ENSMUST00000161176 - NO_TRANSLATION retained_intron ENSMUSG00000030145 Zfp248 ENSMUST00000159254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030145 Zfp248 ENSMUST00000159403 ENSMUSP00000125400 TRANSLATION protein_coding stop - 3 21.0 0.0 0.0 0.0 22.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030145 Zfp248 ENSMUST00000069292 ENSMUSP00000068807 TRANSLATION protein_coding - CCDS51884.1 1 576.0 28.0 0.6 8.7 249.5 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000030145 Zfp248 ENSMUST00000162275 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029831 Npvf ENSMUST00000031853 ENSMUSP00000031853 TRANSLATION protein_coding - CCDS20133.1 1 188.0 0.0 0.0 0.3 0.0 0.0 -2,-5 0.8763 - 0.0 PRINCIPAL:1 ENSMUSG00000055912 Tmem150a ENSMUST00000206531 ENSMUSP00000145673 TRANSLATION protein_coding stop - 5 174.0 0.0 4.58 0.0 133.3 6.0 1,-2 0.0048 1 -2.0 MINOR ENSMUSG00000055912 Tmem150a ENSMUST00000206821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055912 Tmem150a ENSMUST00000206064 ENSMUSP00000146268 TRANSLATION protein_coding stop - 5 120.0 0.0 3.75 0.0 93.7 2.0 0,-3 0.0 1 -2.0 MINOR ENSMUSG00000055912 Tmem150a ENSMUST00000069695 ENSMUSP00000063977 TRANSLATION protein_coding - CCDS20239.1 1 271.0 0.0 5.88 28.9 204.4 8.0 0,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000055912 Tmem150a ENSMUST00000132243 ENSMUSP00000138445 TRANSLATION protein_coding - - 5 168.0 0.0 2.4 0.0 0.0 0.0 0,-3 0.0 - 0.0 MINOR ENSMUSG00000045896 Paip2b ENSMUST00000145593 - NO_TRANSLATION retained_intron ENSMUSG00000045896 Paip2b ENSMUST00000142806 - NO_TRANSLATION retained_intron ENSMUSG00000045896 Paip2b ENSMUST00000205421 - NO_TRANSLATION retained_intron ENSMUSG00000045896 Paip2b ENSMUST00000125493 - NO_TRANSLATION retained_intron ENSMUSG00000045896 Paip2b ENSMUST00000058383 ENSMUSP00000050404 TRANSLATION protein_coding - CCDS20287.1 1 136.0 0.0 1.9 2.6 28.1 0.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000033174 Mgll ENSMUST00000113581 ENSMUSP00000109211 TRANSLATION protein_coding - - 5 331.0 10.0 7.975 1.3 230.6 0.0 -4,-6 0.103 16 17.316 MINOR ENSMUSG00000033174 Mgll ENSMUST00000150180 ENSMUSP00000145068 TRANSLATION protein_coding - - 1 116.0 3.0 2.08 0.0 34.3 0.0 -4,-6 0.0 4 1.332 MINOR ENSMUSG00000033174 Mgll ENSMUST00000203608 ENSMUSP00000144883 TRANSLATION nonsense_mediated_decay - - 3 47.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000033174 Mgll ENSMUST00000151699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033174 Mgll ENSMUST00000163271 ENSMUSP00000127374 TRANSLATION protein_coding - CCDS51843.1 1 319.0 10.0 7.75 1.3 243.4 0.0 -4,-5 0.2086 17 17.634 MINOR ENSMUSG00000033174 Mgll ENSMUST00000205045 - NO_TRANSLATION retained_intron ENSMUSG00000033174 Mgll ENSMUST00000113585 ENSMUSP00000109215 TRANSLATION protein_coding - CCDS20338.1 1 303.0 10.0 7.75 15.3 243.4 0.0 -4,-6 1.0 16 21.55 PRINCIPAL:1 ENSMUSG00000033174 Mgll ENSMUST00000089449 ENSMUSP00000086872 TRANSLATION protein_coding - CCDS20338.1 1 303.0 10.0 7.75 15.3 243.4 0.0 -4,-6 1.0 16 21.55 PRINCIPAL:1 ENSMUSG00000033174 Mgll ENSMUST00000113582 ENSMUSP00000109212 TRANSLATION protein_coding - CCDS51844.1 1 258.0 10.0 6.75 0.0 153.9 0.0 -4,-6 0.005 12 10.182 MINOR ENSMUSG00000033174 Mgll ENSMUST00000203824 ENSMUSP00000145364 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000062528 Tas2r109 ENSMUST00000067539 ENSMUSP00000069300 TRANSLATION protein_coding - CCDS20631.1 - 316.0 0.0 0.0 0.1 265.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000076573 Igkv1-35 ENSMUST00000197820 ENSMUSP00000142338 TRANSLATION IG_V_gene stop - - 120.0 0.0 1.0 0.0 61.3 0.0 2,-3 0.8281 - -2.0 PRINCIPAL:1 ENSMUSG00000048697 Vmn1r26 ENSMUST00000228040 ENSMUSP00000154514 TRANSLATION protein_coding - CCDS20190.1 - 339.0 0.0 0.0 0.0 181.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048697 Vmn1r26 ENSMUST00000228070 ENSMUSP00000154594 TRANSLATION protein_coding - CCDS20190.1 - 339.0 0.0 0.0 0.0 181.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048697 Vmn1r26 ENSMUST00000049694 ENSMUSP00000052301 TRANSLATION protein_coding - CCDS20190.1 - 339.0 0.0 0.0 0.0 181.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048697 Vmn1r26 ENSMUST00000228951 ENSMUSP00000154463 TRANSLATION protein_coding - CCDS20190.1 - 339.0 0.0 0.0 0.0 181.3 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000049232 Tigd2 ENSMUST00000062626 ENSMUSP00000057223 TRANSLATION protein_coding - CCDS39500.1 1 525.0 0.0 0.0 7.8 286.7 0.0 -4,-6 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000068263 Efcc1 ENSMUST00000159570 ENSMUSP00000138649 TRANSLATION protein_coding - CCDS51840.1 5 558.0 0.0 0.0 0.1 967.5 0.0 -4,-2 0.9486 1 2.0 PRINCIPAL:4 ENSMUSG00000068263 Efcc1 ENSMUST00000159956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068263 Efcc1 ENSMUST00000032132 ENSMUSP00000032132 TRANSLATION protein_coding - - 5 559.0 0.0 0.0 0.1 963.4 0.0 -4,-2 0.7128 1 2.0 ALTERNATIVE:2 ENSMUSG00000068263 Efcc1 ENSMUST00000160743 - NO_TRANSLATION retained_intron ENSMUSG00000068263 Efcc1 ENSMUST00000159681 - NO_TRANSLATION retained_intron ENSMUSG00000030323 Ift122 ENSMUST00000038234 ENSMUSP00000045468 TRANSLATION protein_coding - CCDS20445.1 1 1183.0 0.0 4.68 29.1 44.2 0.0 -4,-5 0.9958 24 11.39 ALTERNATIVE:1 ENSMUSG00000030323 Ift122 ENSMUST00000138113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030323 Ift122 ENSMUST00000149083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030323 Ift122 ENSMUST00000203243 - NO_TRANSLATION retained_intron ENSMUSG00000030323 Ift122 ENSMUST00000141305 ENSMUSP00000138535 TRANSLATION nonsense_mediated_decay - - 1 209.0 0.0 3.09 0.0 31.5 0.0 -4,-5 0.0003 4 -2.0 MINOR ENSMUSG00000030323 Ift122 ENSMUST00000125889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030323 Ift122 ENSMUST00000146950 - NO_TRANSLATION retained_intron ENSMUSG00000030323 Ift122 ENSMUST00000124283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030323 Ift122 ENSMUST00000112923 ENSMUSP00000108545 TRANSLATION protein_coding - - 5 1241.0 0.0 4.84 7.3 44.2 0.0 -4,-5 0.3965 24 8.832 MINOR ENSMUSG00000030323 Ift122 ENSMUST00000112925 ENSMUSP00000108547 TRANSLATION protein_coding - CCDS51880.1 1 1182.0 0.0 4.68 31.3 44.2 0.0 -4,-5 1.0 24 11.682 PRINCIPAL:4 ENSMUSG00000030323 Ift122 ENSMUST00000155565 - NO_TRANSLATION retained_intron ENSMUSG00000030323 Ift122 ENSMUST00000152092 - NO_TRANSLATION retained_intron ENSMUSG00000033216 Eefsec ENSMUST00000205014 ENSMUSP00000145448 TRANSLATION nonsense_mediated_decay - - 3 125.0 7.0 0.4 0.0 43.5 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000033216 Eefsec ENSMUST00000203213 ENSMUSP00000145480 TRANSLATION protein_coding stop - 3 242.0 7.0 3.9 0.0 28.2 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000033216 Eefsec ENSMUST00000165242 ENSMUSP00000131207 TRANSLATION protein_coding - CCDS20335.1 1 583.0 14.0 6.38 3.3 123.1 0.0 -4,-2 1.0 17 19.0 PRINCIPAL:1 ENSMUSG00000033216 Eefsec ENSMUST00000203886 ENSMUSP00000145017 TRANSLATION protein_coding stop - 2 254.0 7.0 3.5 0.0 60.3 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000033216 Eefsec ENSMUST00000205179 ENSMUSP00000144839 TRANSLATION protein_coding - - 1 534.0 14.0 5.23 0.0 123.1 0.0 -4,-2 0.0277 14 15.702 MINOR ENSMUSG00000033216 Eefsec ENSMUST00000204459 ENSMUSP00000144824 TRANSLATION protein_coding stop - 3 266.0 14.0 3.73 0.0 93.1 0.0 -4,-2 0.0004 5 -2.0 MINOR ENSMUSG00000040649 Rimklb ENSMUST00000135320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040649 Rimklb ENSMUST00000204045 ENSMUSP00000144727 TRANSLATION protein_coding stop - 3 58.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0079 - -2.0 MINOR ENSMUSG00000040649 Rimklb ENSMUST00000143701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040649 Rimklb ENSMUST00000205114 ENSMUSP00000145122 TRANSLATION protein_coding stop - 5 71.0 0.0 1.5 0.0 0.0 0.0 -4,-7 0.0077 - -2.0 MINOR ENSMUSG00000040649 Rimklb ENSMUST00000204731 ENSMUSP00000144770 TRANSLATION protein_coding - - 1 330.0 22.0 4.75 1.0 0.0 0.0 -4,-7 0.0871 3 10.002 MINOR ENSMUSG00000040649 Rimklb ENSMUST00000146274 ENSMUSP00000138104 TRANSLATION nonsense_mediated_decay - - 2 251.0 21.0 4.25 0.0 0.0 0.0 -4,-7 0.0187 2 -2.0 MINOR ENSMUSG00000040649 Rimklb ENSMUST00000068242 ENSMUSP00000064467 TRANSLATION protein_coding - CCDS39622.1 1 387.0 22.0 5.75 20.5 0.0 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000038456 Dennd2a ENSMUST00000036877 ENSMUSP00000045367 TRANSLATION protein_coding - CCDS20023.1 1 1000.0 0.0 6.8 0.4 289.4 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000038456 Dennd2a ENSMUST00000202707 - NO_TRANSLATION retained_intron ENSMUSG00000038456 Dennd2a ENSMUST00000149162 - NO_TRANSLATION retained_intron ENSMUSG00000038456 Dennd2a ENSMUST00000154149 ENSMUSP00000116907 TRANSLATION protein_coding stop - 1 420.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0026 2 -2.0 MINOR ENSMUSG00000038456 Dennd2a ENSMUST00000145541 - NO_TRANSLATION retained_intron ENSMUSG00000094525 Trbv12-2 ENSMUST00000103269 ENSMUSP00000100085 TRANSLATION TR_V_gene stop - - 124.0 0.0 1.0 0.0 56.3 0.0 1,-2 0.8264 - -2.0 PRINCIPAL:1 ENSMUSG00000042810 Krba1 ENSMUST00000203371 ENSMUSP00000145256 TRANSLATION protein_coding - CCDS85038.1 1 1042.0 0.0 0.5 0.0 220.4 0.0 -4,-6 0.2009 2 4.128 MINOR ENSMUSG00000042810 Krba1 ENSMUST00000031815 ENSMUSP00000031815 TRANSLATION protein_coding - - 1 1032.0 0.0 0.0 0.0 214.8 0.0 -4,-2 0.0786 1 1.482 MINOR ENSMUSG00000042810 Krba1 ENSMUST00000114571 ENSMUSP00000110218 TRANSLATION protein_coding - CCDS20102.1 1 1043.0 0.0 0.5 0.0 220.4 0.0 -4,-6 0.2043 2 4.128 MINOR ENSMUSG00000042810 Krba1 ENSMUST00000204308 - NO_TRANSLATION retained_intron ENSMUSG00000042810 Krba1 ENSMUST00000077093 ENSMUSP00000076345 TRANSLATION protein_coding - CCDS20102.1 1 1043.0 0.0 0.5 0.0 220.4 0.0 -4,-6 0.2043 2 4.128 MINOR ENSMUSG00000042810 Krba1 ENSMUST00000114572 ENSMUSP00000110219 TRANSLATION protein_coding - CCDS85037.1 1 1078.0 0.0 1.3 0.0 290.1 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000042810 Krba1 ENSMUST00000154536 - NO_TRANSLATION retained_intron ENSMUSG00000042810 Krba1 ENSMUST00000148697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042810 Krba1 ENSMUST00000127980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042810 Krba1 ENSMUST00000204554 - NO_TRANSLATION retained_intron ENSMUSG00000051262 Nat8f3 ENSMUST00000168531 ENSMUSP00000131413 TRANSLATION protein_coding - CCDS20299.1 1 227.0 21.0 1.0 4.5 50.0 2.0 -4,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000051262 Nat8f3 ENSMUST00000201219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051262 Nat8f3 ENSMUST00000050780 ENSMUSP00000093431 TRANSLATION protein_coding - CCDS20299.1 1 227.0 21.0 1.0 4.5 50.0 2.0 -4,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000032625 Thsd7a ENSMUST00000119443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032625 Thsd7a ENSMUST00000119581 ENSMUSP00000113681 TRANSLATION protein_coding - CCDS51721.1 5 1646.0 21.0 3.145 4.0 260.4 1.0 2,-3 1.0 26 16.0 PRINCIPAL:4 ENSMUSG00000032625 Thsd7a ENSMUST00000135450 - NO_TRANSLATION retained_intron ENSMUSG00000032625 Thsd7a ENSMUST00000137836 - NO_TRANSLATION retained_intron ENSMUSG00000032625 Thsd7a ENSMUST00000122369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032625 Thsd7a ENSMUST00000172356 ENSMUSP00000131662 TRANSLATION protein_coding - - 5 1646.0 21.0 3.145 4.0 260.4 1.0 2,-3 0.7561 26 16.0 ALTERNATIVE:2 ENSMUSG00000040187 Bmal2 ENSMUST00000123444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040187 Bmal2 ENSMUST00000080530 ENSMUSP00000079373 TRANSLATION protein_coding - CCDS20702.1 1 579.0 0.0 6.6155 0.0 166.1 0.0 -4,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000040187 Bmal2 ENSMUST00000129788 ENSMUSP00000121170 TRANSLATION nonsense_mediated_decay - - 2 199.0 0.0 2.998 0.0 87.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000040187 Bmal2 ENSMUST00000204578 - NO_TRANSLATION retained_intron ENSMUSG00000040187 Bmal2 ENSMUST00000136594 - NO_TRANSLATION retained_intron ENSMUSG00000040187 Bmal2 ENSMUST00000111636 ENSMUSP00000107263 TRANSLATION protein_coding - CCDS80640.1 1 570.0 0.0 6.6155 0.0 166.1 0.0 -4,-2 0.555 - 8.0 ALTERNATIVE:2 ENSMUSG00000040187 Bmal2 ENSMUST00000111639 ENSMUSP00000107266 TRANSLATION protein_coding - CCDS20702.1 5 579.0 0.0 6.6155 0.0 166.1 0.0 -4,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000040187 Bmal2 ENSMUST00000111638 ENSMUSP00000107265 TRANSLATION protein_coding - CCDS80641.1 1 569.0 0.0 6.2855 0.0 145.6 0.0 -4,-2 0.1934 - 6.54 MINOR ENSMUSG00000040187 Bmal2 ENSMUST00000203818 - NO_TRANSLATION retained_intron ENSMUSG00000045095 Magi1 ENSMUST00000205116 ENSMUSP00000145251 TRANSLATION protein_coding stop - 2 117.0 0.0 1.35 0.0 99.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045095 Magi1 ENSMUST00000203034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045095 Magi1 ENSMUST00000204347 ENSMUSP00000144881 TRANSLATION protein_coding - CCDS85099.1 1 1280.0 0.0 13.9615 5.4 600.8 0.0 -4,-6 1.0 18 13.964 PRINCIPAL:1 ENSMUSG00000045095 Magi1 ENSMUST00000089317 ENSMUSP00000086730 TRANSLATION protein_coding - CCDS20377.1 1 1471.0 0.0 13.9115 2.5 601.4 0.0 -4,-6 0.5479 18 12.58 MINOR ENSMUSG00000045095 Magi1 ENSMUST00000203519 ENSMUSP00000145244 TRANSLATION protein_coding stop - 1 1115.0 0.0 12.0935 0.0 507.1 0.0 -4,-6 0.0164 14 -2.0 MINOR ENSMUSG00000045095 Magi1 ENSMUST00000204167 ENSMUSP00000145200 TRANSLATION protein_coding stop - 3 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0218 - -2.0 MINOR ENSMUSG00000045095 Magi1 ENSMUST00000093769 ENSMUSP00000091283 TRANSLATION protein_coding - CCDS39573.1 1 1255.0 0.0 11.5215 0.3 496.4 0.0 -4,-5 0.1781 14 1.122 MINOR ENSMUSG00000045095 Magi1 ENSMUST00000055224 ENSMUSP00000062085 TRANSLATION protein_coding - CCDS20378.1 1 1171.0 0.0 12.3435 3.3 512.9 0.0 -4,-6 0.3673 15 4.502 MINOR ENSMUSG00000045095 Magi1 ENSMUST00000204788 ENSMUSP00000145434 TRANSLATION protein_coding start - 2 132.0 0.0 0.732 0.0 115.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000045095 Magi1 ENSMUST00000204532 ENSMUSP00000144769 TRANSLATION nonsense_mediated_decay - - 1 496.0 0.0 4.95 0.0 204.3 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000045095 Magi1 ENSMUST00000203688 ENSMUSP00000145515 TRANSLATION protein_coding - CCDS85098.1 1 1020.0 0.0 11.1045 0.7 503.0 0.0 -4,-5 0.0794 14 0.384 MINOR ENSMUSG00000059022 Kcp ENSMUST00000091391 ENSMUSP00000088954 TRANSLATION nonsense_mediated_decay - - 2 1254.0 4.0 5.763 0.0 384.3 0.0 3,-2 0.0575 10 -2.0 MINOR ENSMUSG00000059022 Kcp ENSMUST00000160181 ENSMUSP00000125699 TRANSLATION nonsense_mediated_decay start - 3 91.0 0.0 1.515 0.0 39.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000059022 Kcp ENSMUST00000159479 ENSMUSP00000124771 TRANSLATION nonsense_mediated_decay start - 1 359.0 4.0 1.356 0.0 62.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000059022 Kcp ENSMUST00000162959 - NO_TRANSLATION retained_intron ENSMUSG00000059022 Kcp ENSMUST00000161237 ENSMUSP00000124097 TRANSLATION nonsense_mediated_decay - - 5 165.0 0.0 0.45 0.0 0.0 0.0 3,-2 0.0022 2 -2.0 MINOR ENSMUSG00000059022 Kcp ENSMUST00000101614 ENSMUSP00000099135 TRANSLATION protein_coding - CCDS57415.1 1 1550.0 4.0 8.027 0.0 552.4 0.0 3,-2 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000059022 Kcp ENSMUST00000161276 ENSMUSP00000125716 TRANSLATION nonsense_mediated_decay start - 1 19.0 0.0 0.25 0.0 0.0 0.0 -3,-7 0.0166 - -2.0 MINOR ENSMUSG00000059022 Kcp ENSMUST00000161655 - NO_TRANSLATION retained_intron ENSMUSG00000059022 Kcp ENSMUST00000078112 ENSMUSP00000077251 TRANSLATION protein_coding - - 5 1255.0 4.0 5.763 0.0 384.3 0.0 3,-2 0.0575 10 5.47 MINOR ENSMUSG00000059022 Kcp ENSMUST00000159482 ENSMUSP00000158862 TRANSLATION protein_coding start - 1 728.0 0.0 1.3 0.0 121.5 0.0 -4,-5 0.0066 - -2.0 MINOR ENSMUSG00000107588 Gm45021 ENSMUST00000204521 ENSMUSP00000145172 TRANSLATION protein_coding,RT stop - 5 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000029992 Gfpt1 ENSMUST00000113658 ENSMUSP00000109288 TRANSLATION protein_coding - CCDS39545.1 1 681.0 39.0 15.38 34.0 233.2 0.0 -4,-7 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000029992 Gfpt1 ENSMUST00000204872 - NO_TRANSLATION retained_intron ENSMUSG00000029992 Gfpt1 ENSMUST00000113657 ENSMUSP00000109287 TRANSLATION protein_coding - - 1 124.0 5.0 3.33 0.0 0.0 0.0 -4,-7 0.0 3 0.0 MINOR ENSMUSG00000029992 Gfpt1 ENSMUST00000113655 ENSMUSP00000109285 TRANSLATION protein_coding - - 1 102.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000029992 Gfpt1 ENSMUST00000032057 ENSMUSP00000032057 TRANSLATION protein_coding - - 1 697.0 39.0 15.38 7.7 233.2 0.0 -4,-7 0.4028 24 18.812 MINOR ENSMUSG00000029992 Gfpt1 ENSMUST00000150410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029992 Gfpt1 ENSMUST00000146410 - NO_TRANSLATION retained_intron ENSMUSG00000056305 Usp39 ENSMUST00000070345 ENSMUSP00000064515 TRANSLATION protein_coding - CCDS20238.1 1 564.0 6.0 10.35 8.6 182.9 0.0 -4,-7 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000056305 Usp39 ENSMUST00000154799 - NO_TRANSLATION retained_intron ENSMUSG00000056305 Usp39 ENSMUST00000206262 ENSMUSP00000145792 TRANSLATION nonsense_mediated_decay start - 5 65.0 3.0 1.666 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000056197 Jkampl ENSMUST00000204006 ENSMUSP00000159560 TRANSLATION protein_coding - CCDS39520.1 - 305.0 0.0 0.0 13.8 366.5 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000030047 Arhgap25 ENSMUST00000203559 - NO_TRANSLATION retained_intron ENSMUSG00000030047 Arhgap25 ENSMUST00000145128 - NO_TRANSLATION retained_intron ENSMUSG00000030047 Arhgap25 ENSMUST00000113637 ENSMUSP00000109267 TRANSLATION protein_coding - CCDS20321.1 1 648.0 11.0 4.94 8.3 217.1 0.0 -4,-2 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000030047 Arhgap25 ENSMUST00000101197 ENSMUSP00000098758 TRANSLATION protein_coding - CCDS20322.1 1 622.0 11.0 4.94 5.1 217.1 0.0 -4,-6 0.8012 13 19.686 MINOR ENSMUSG00000030047 Arhgap25 ENSMUST00000071024 ENSMUSP00000068964 TRANSLATION protein_coding - CCDS71790.1 1 559.0 1.0 3.94 3.4 144.5 0.0 -4,-5 0.1558 13 6.633 MINOR ENSMUSG00000030045 Mrpl19 ENSMUST00000148025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030045 Mrpl19 ENSMUST00000032124 ENSMUSP00000032124 TRANSLATION protein_coding - CCDS39523.1 1 292.0 0.0 4.4 8.8 0.0 0.0 -4,0 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000030045 Mrpl19 ENSMUST00000128374 - NO_TRANSLATION retained_intron ENSMUSG00000052751 Repin1 ENSMUST00000009420 ENSMUSP00000009420 TRANSLATION protein_coding - CCDS39480.1 1 545.0 58.0 1.4 0.4 244.2 0.0 -4,-2 1.0 3 14.0 PRINCIPAL:2 ENSMUSG00000052751 Repin1 ENSMUST00000135151 ENSMUSP00000118890 TRANSLATION protein_coding - CCDS85041.1 1 601.0 58.0 1.4 0.1 244.2 0.0 -4,-6 0.3171 3 14.0 ALTERNATIVE:2 ENSMUSG00000052751 Repin1 ENSMUST00000130896 - NO_TRANSLATION retained_intron ENSMUSG00000052751 Repin1 ENSMUST00000154010 ENSMUSP00000121975 TRANSLATION protein_coding stop - 1 360.0 31.0 0.5 0.0 120.4 0.0 -4,-2 0.0009 2 -2.0 MINOR ENSMUSG00000052751 Repin1 ENSMUST00000118229 ENSMUSP00000113548 TRANSLATION protein_coding - CCDS85042.1 1 598.0 58.0 1.4 0.1 244.2 0.0 -3,-1 0.3855 3 14.0 ALTERNATIVE:2 ENSMUSG00000052751 Repin1 ENSMUST00000163452 ENSMUSP00000132365 TRANSLATION protein_coding - CCDS39480.1 1 545.0 58.0 1.4 0.4 244.2 0.0 -4,-2 1.0 3 14.0 PRINCIPAL:2 ENSMUSG00000052751 Repin1 ENSMUST00000150030 - NO_TRANSLATION retained_intron ENSMUSG00000030043 Tacr1 ENSMUST00000205041 - NO_TRANSLATION retained_intron ENSMUSG00000030043 Tacr1 ENSMUST00000203775 ENSMUSP00000145217 TRANSLATION protein_coding - CCDS20262.1 1 407.0 0.0 5.0 15.7 194.5 7.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030043 Tacr1 ENSMUST00000032122 ENSMUSP00000032122 TRANSLATION protein_coding - CCDS20262.1 1 407.0 0.0 5.0 15.7 194.5 7.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000017978 Cadps2 ENSMUST00000069074 ENSMUSP00000064876 TRANSLATION protein_coding - - 5 1297.0 0.0 6.364 4.4 148.9 0.0 -4,-5 0.5083 32 11.088 MINOR ENSMUSG00000017978 Cadps2 ENSMUST00000115356 ENSMUSP00000111013 TRANSLATION protein_coding - CCDS57413.1 1 768.0 0.0 3.07 0.0 36.9 0.0 -4,-5 0.0365 14 0.0 MINOR ENSMUSG00000017978 Cadps2 ENSMUST00000136279 - NO_TRANSLATION retained_intron ENSMUSG00000017978 Cadps2 ENSMUST00000115355 - NO_TRANSLATION retained_intron ENSMUSG00000017978 Cadps2 ENSMUST00000115361 ENSMUSP00000111018 TRANSLATION protein_coding - CCDS57411.1 1 1259.0 0.0 6.989 5.5 148.9 0.0 -4,-5 0.8749 31 12.824 MINOR ENSMUSG00000017978 Cadps2 ENSMUST00000142913 ENSMUSP00000138167 TRANSLATION protein_coding - - 5 1275.0 0.0 6.529 0.0 163.0 0.0 -4,-5 0.206 31 10.752 MINOR ENSMUSG00000017978 Cadps2 ENSMUST00000156986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017978 Cadps2 ENSMUST00000163871 ENSMUSP00000128905 TRANSLATION protein_coding - - 5 1304.0 0.0 6.529 4.4 158.9 0.0 -4,-5 0.6418 33 12.018 MINOR ENSMUSG00000017978 Cadps2 ENSMUST00000152131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017978 Cadps2 ENSMUST00000125350 ENSMUSP00000115866 TRANSLATION protein_coding start - 5 899.0 0.0 6.989 0.0 148.9 0.0 -4,-7 0.0282 22 -2.0 MINOR ENSMUSG00000017978 Cadps2 ENSMUST00000018122 ENSMUSP00000018122 TRANSLATION protein_coding - CCDS39439.1 5 1304.0 0.0 6.529 4.4 163.0 0.0 -4,-5 0.8467 33 12.264 MINOR ENSMUSG00000017978 Cadps2 ENSMUST00000115358 ENSMUSP00000111015 TRANSLATION protein_coding - CCDS57412.1 5 1264.0 0.0 7.154 5.5 163.0 0.0 -4,-5 1.0 31 14.0 PRINCIPAL:1 ENSMUSG00000062980 Cped1 ENSMUST00000151315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062980 Cped1 ENSMUST00000137437 ENSMUSP00000119808 TRANSLATION protein_coding start/stop - 1 828.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0561 6 -2.0 MINOR ENSMUSG00000062980 Cped1 ENSMUST00000115383 ENSMUSP00000111041 TRANSLATION protein_coding - CCDS39435.1 1 1026.0 0.0 0.0 5.3 0.0 0.0 -2,-7 1.0 8 2.0 PRINCIPAL:1 ENSMUSG00000062980 Cped1 ENSMUST00000156621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062980 Cped1 ENSMUST00000153922 ENSMUSP00000138562 TRANSLATION nonsense_mediated_decay - - 1 162.0 0.0 0.0 0.0 0.0 0.0 -2,-7 0.0195 1 -2.0 MINOR ENSMUSG00000062980 Cped1 ENSMUST00000141064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062980 Cped1 ENSMUST00000154734 - NO_TRANSLATION retained_intron ENSMUSG00000062980 Cped1 ENSMUST00000115382 ENSMUSP00000111040 TRANSLATION protein_coding - - 5 473.0 0.0 0.0 0.0 0.0 0.0 -2,-7 0.0394 3 0.0 MINOR ENSMUSG00000036667 Tcaf1 ENSMUST00000141794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036667 Tcaf1 ENSMUST00000121083 ENSMUSP00000114036 TRANSLATION protein_coding - CCDS20076.1 1 922.0 0.0 5.6 9.9 256.9 0.0 -4,-7 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000036667 Tcaf1 ENSMUST00000045140 ENSMUSP00000036379 TRANSLATION protein_coding - CCDS20076.1 1 922.0 0.0 5.6 9.9 256.9 0.0 -4,-7 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000036667 Tcaf1 ENSMUST00000045054 ENSMUSP00000046137 TRANSLATION protein_coding - CCDS20076.1 1 922.0 0.0 5.6 9.9 256.9 0.0 -4,-7 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000036667 Tcaf1 ENSMUST00000153952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036667 Tcaf1 ENSMUST00000165486 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036667 Tcaf1 ENSMUST00000151021 - NO_TRANSLATION retained_intron ENSMUSG00000036667 Tcaf1 ENSMUST00000152100 - NO_TRANSLATION retained_intron ENSMUSG00000007216 Zfp775 ENSMUST00000204042 ENSMUSP00000145369 TRANSLATION protein_coding stop - 1 183.0 12.0 0.6 0.0 73.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007216 Zfp775 ENSMUST00000204095 ENSMUSP00000145192 TRANSLATION protein_coding - CCDS20107.1 2 538.0 44.0 1.2 1.1 244.0 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000007216 Zfp775 ENSMUST00000061720 ENSMUSP00000056290 TRANSLATION protein_coding - CCDS20107.1 1 538.0 44.0 1.2 1.1 244.0 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000030154 Klrb1f ENSMUST00000204320 ENSMUSP00000144813 TRANSLATION protein_coding stop - 3 111.0 1.0 1.75 0.0 0.0 2.0 -4,-7 0.0029 - -2.0 MINOR ENSMUSG00000030154 Klrb1f ENSMUST00000204508 ENSMUSP00000145033 TRANSLATION nonsense_mediated_decay - - 1 86.0 0.0 0.4 0.0 0.0 2.0 -4,-7 0.0035 - -2.0 MINOR ENSMUSG00000030154 Klrb1f ENSMUST00000204413 - NO_TRANSLATION retained_intron ENSMUSG00000030154 Klrb1f ENSMUST00000032257 ENSMUSP00000032257 TRANSLATION protein_coding - CCDS20579.1 1 217.0 3.0 4.05 0.4 60.9 2.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030154 Klrb1f ENSMUST00000204784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030154 Klrb1f ENSMUST00000203059 ENSMUSP00000145316 TRANSLATION nonsense_mediated_decay - - 1 111.0 0.0 0.7 0.0 0.0 2.0 -4,-7 0.0035 - -2.0 MINOR ENSMUSG00000025486 Sirt3 ENSMUST00000137024 ENSMUSP00000114247 TRANSLATION protein_coding stop - 3 182.0 19.0 3.58 0.0 118.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000025486 Sirt3 ENSMUST00000147331 ENSMUSP00000121151 TRANSLATION protein_coding stop - 3 258.0 22.0 4.38 0.0 179.5 0.0 -2,-5 0.0887 3 -2.0 MINOR ENSMUSG00000025486 Sirt3 ENSMUST00000026559 ENSMUSP00000026559 TRANSLATION protein_coding - CCDS21989.1 1 257.0 26.0 5.41 9.1 182.6 0.0 -4,-6 1.0 5 20.202 PRINCIPAL:1 ENSMUSG00000025486 Sirt3 ENSMUST00000210296 ENSMUSP00000147504 TRANSLATION nonsense_mediated_decay - - 5 189.0 23.0 3.58 0.0 179.5 0.0 -4,-6 0.0106 2 -2.0 MINOR ENSMUSG00000025486 Sirt3 ENSMUST00000211179 ENSMUSP00000147716 TRANSLATION protein_coding - - 5 309.0 26.0 5.81 0.0 179.7 0.0 -4,-6 0.0336 5 17.826 MINOR ENSMUSG00000025486 Sirt3 ENSMUST00000137710 ENSMUSP00000115202 TRANSLATION protein_coding stop - 5 100.0 12.0 1.83 0.0 91.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025486 Sirt3 ENSMUST00000106048 ENSMUSP00000101663 TRANSLATION protein_coding - CCDS21989.1 1 257.0 26.0 5.41 9.1 182.6 0.0 -4,-6 1.0 5 20.202 PRINCIPAL:1 ENSMUSG00000025486 Sirt3 ENSMUST00000210974 - NO_TRANSLATION retained_intron ENSMUSG00000025486 Sirt3 ENSMUST00000210398 - NO_TRANSLATION retained_intron ENSMUSG00000025486 Sirt3 ENSMUST00000210706 - NO_TRANSLATION retained_intron ENSMUSG00000090662 Vmn2r45 ENSMUST00000164845 ENSMUSP00000129466 TRANSLATION protein_coding - CCDS57486.1 5 852.0 4.0 1.97 0.1 379.1 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000063713 Klk1b24 ENSMUST00000073713 ENSMUSP00000073392 TRANSLATION protein_coding - CCDS21198.1 1 263.0 6.0 4.0 6.8 238.4 0.0 4,-1 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000041420 Meis3 ENSMUST00000177156 ENSMUSP00000135103 TRANSLATION nonsense_mediated_decay - - 1 313.0 0.0 2.239 0.0 189.7 0.0 -4,-5 0.0065 - -2.0 MINOR ENSMUSG00000041420 Meis3 ENSMUST00000177540 ENSMUSP00000135388 TRANSLATION protein_coding stop - 3 150.0 0.0 0.24 0.0 72.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041420 Meis3 ENSMUST00000175946 - NO_TRANSLATION retained_intron ENSMUSG00000041420 Meis3 ENSMUST00000183527 - NO_TRANSLATION retained_intron ENSMUSG00000041420 Meis3 ENSMUST00000176342 ENSMUSP00000135302 TRANSLATION protein_coding stop - 3 134.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041420 Meis3 ENSMUST00000002495 ENSMUSP00000002495 TRANSLATION protein_coding - CCDS39782.1 1 378.0 0.0 2.364 6.7 222.6 0.0 -4,-5 1.0 - 12.746 PRINCIPAL:1 ENSMUSG00000041420 Meis3 ENSMUST00000176714 - NO_TRANSLATION retained_intron ENSMUSG00000041420 Meis3 ENSMUST00000176506 ENSMUSP00000134918 TRANSLATION protein_coding - CCDS71892.1 1 361.0 0.0 2.989 5.6 147.9 0.0 -4,-5 0.6461 - 9.132 MINOR ENSMUSG00000041420 Meis3 ENSMUST00000176446 ENSMUSP00000134855 TRANSLATION nonsense_mediated_decay start - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000030598 Fbxo17 ENSMUST00000167118 ENSMUSP00000130422 TRANSLATION protein_coding - CCDS39863.2 5 286.0 0.0 4.5 0.1 265.6 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030598 Fbxo17 ENSMUST00000139172 - NO_TRANSLATION retained_intron ENSMUSG00000030598 Fbxo17 ENSMUST00000032818 ENSMUSP00000032818 TRANSLATION protein_coding - CCDS39863.2 1 286.0 0.0 4.5 0.1 265.6 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030598 Fbxo17 ENSMUST00000108278 ENSMUSP00000103913 TRANSLATION nonsense_mediated_decay - CCDS39863.2 2 286.0 0.0 4.5 0.1 265.6 0.0 -4,-1 1.0 - -2.0 MINOR ENSMUSG00000030598 Fbxo17 ENSMUST00000108279 ENSMUSP00000103914 TRANSLATION protein_coding - CCDS80688.1 1 242.0 0.0 3.5 0.0 191.7 0.0 -4,-1 0.0145 - 5.568 MINOR ENSMUSG00000063133 Klk1b1 ENSMUST00000078835 ENSMUSP00000077879 TRANSLATION protein_coding - CCDS21190.1 1 261.0 14.0 4.0 7.1 235.8 0.0 4,-1 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000003190 Bcl2l12 ENSMUST00000207342 ENSMUSP00000146355 TRANSLATION protein_coding stop - 2 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0115 - -2.0 MINOR ENSMUSG00000003190 Bcl2l12 ENSMUST00000003290 ENSMUSP00000003290 TRANSLATION protein_coding - CCDS21223.1 1 255.0 0.0 1.25 6.6 0.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000003190 Bcl2l12 ENSMUST00000208128 - NO_TRANSLATION retained_intron ENSMUSG00000003190 Bcl2l12 ENSMUST00000207213 - NO_TRANSLATION retained_intron ENSMUSG00000003190 Bcl2l12 ENSMUST00000207755 ENSMUSP00000146542 TRANSLATION protein_coding - - 2 115.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0111 1 0.0 MINOR ENSMUSG00000003190 Bcl2l12 ENSMUST00000207443 ENSMUSP00000146945 TRANSLATION protein_coding stop - 3 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0117 2 -2.0 MINOR ENSMUSG00000096465 Or5p64 ENSMUST00000211508 ENSMUSP00000147652 TRANSLATION protein_coding - CCDS21709.1 3 314.0 0.0 1.0 10.4 175.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096465 Or5p64 ENSMUST00000215173 ENSMUSP00000149427 TRANSLATION protein_coding - CCDS21709.1 3 314.0 0.0 1.0 10.4 175.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096465 Or5p64 ENSMUST00000072968 ENSMUSP00000072735 TRANSLATION protein_coding - CCDS21709.1 - 314.0 0.0 1.0 10.4 175.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053522 Lgals7 ENSMUST00000128001 - NO_TRANSLATION retained_intron ENSMUSG00000053522 Lgals7 ENSMUST00000081457 ENSMUSP00000080179 TRANSLATION protein_coding - CCDS21060.1 1 136.0 9.0 3.0 3.7 130.4 0.0 -4,-2 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000053522 Lgals7 ENSMUST00000138272 ENSMUSP00000123110 TRANSLATION protein_coding - CCDS21060.1 3 136.0 9.0 3.0 3.7 130.4 0.0 -4,-2 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000043310 Or51s1 ENSMUST00000214160 ENSMUSP00000150836 TRANSLATION protein_coding - CCDS21552.1 5 322.0 0.0 0.8 8.6 300.7 4.0 -1,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043310 Or51s1 ENSMUST00000215773 ENSMUSP00000148964 TRANSLATION protein_coding - CCDS21552.1 5 322.0 0.0 0.8 8.6 300.7 4.0 -1,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043310 Or51s1 ENSMUST00000061738 ENSMUSP00000062385 TRANSLATION protein_coding - CCDS21552.1 - 322.0 0.0 0.8 8.6 300.7 4.0 -1,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000099729 Scgb2b11 ENSMUST00000188293 ENSMUSP00000140470 TRANSLATION protein_coding - CCDS80697.1 5 112.0 0.0 2.3 0.1 96.4 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000064158 Izumo1 ENSMUST00000033100 ENSMUSP00000033100 TRANSLATION protein_coding - CCDS21255.1 1 397.0 0.0 5.58 0.0 309.2 0.0 0,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000064158 Izumo1 ENSMUST00000209590 - NO_TRANSLATION retained_intron ENSMUSG00000002957 Ap2a2 ENSMUST00000003038 ENSMUSP00000003038 TRANSLATION protein_coding - CCDS40188.1 1 938.0 0.0 20.45 19.8 715.4 0.0 -4,-6 1.0 29 16.0 PRINCIPAL:1 ENSMUSG00000002957 Ap2a2 ENSMUST00000201320 - NO_TRANSLATION retained_intron ENSMUSG00000002957 Ap2a2 ENSMUST00000201261 ENSMUSP00000144090 TRANSLATION protein_coding stop - 3 131.0 0.0 2.882 0.0 114.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000060314 Zfp941 ENSMUST00000106052 ENSMUSP00000101667 TRANSLATION protein_coding - CCDS40175.1 1 671.0 44.0 2.1 0.0 316.3 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000060314 Zfp941 ENSMUST00000150053 ENSMUSP00000147965 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 1.15 0.0 87.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060314 Zfp941 ENSMUST00000080651 ENSMUSP00000079482 TRANSLATION protein_coding - - 1 674.0 42.0 1.699 0.0 293.8 0.0 -4,-5 0.176 3 14.172 MINOR ENSMUSG00000034867 Ankrd27 ENSMUST00000205801 - NO_TRANSLATION retained_intron ENSMUSG00000034867 Ankrd27 ENSMUST00000187567 - NO_TRANSLATION retained_intron ENSMUSG00000034867 Ankrd27 ENSMUST00000188906 ENSMUSP00000139753 TRANSLATION protein_coding stop - 3 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034867 Ankrd27 ENSMUST00000206157 ENSMUSP00000145969 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034867 Ankrd27 ENSMUST00000206472 ENSMUSP00000146118 TRANSLATION nonsense_mediated_decay - - 5 388.0 0.0 1.715 0.0 82.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034867 Ankrd27 ENSMUST00000190503 ENSMUSP00000140259 TRANSLATION protein_coding - - 1 993.0 0.0 10.543 0.0 236.6 0.0 -4,-5 0.1062 10 9.0 MINOR ENSMUSG00000034867 Ankrd27 ENSMUST00000187807 ENSMUSP00000140848 TRANSLATION protein_coding start/stop - 5 231.0 0.0 5.29 0.0 96.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000034867 Ankrd27 ENSMUST00000040844 ENSMUSP00000041751 TRANSLATION protein_coding - CCDS21154.1 1 1048.0 0.0 12.043 4.3 236.6 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000034867 Ankrd27 ENSMUST00000186245 ENSMUSP00000140554 TRANSLATION protein_coding - CCDS80706.1 1 377.0 0.0 1.715 0.0 82.8 0.0 -4,-5 0.0116 3 0.0 MINOR ENSMUSG00000034867 Ankrd27 ENSMUST00000206632 ENSMUSP00000145817 TRANSLATION nonsense_mediated_decay start - 3 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090862 Rps13 ENSMUST00000205490 ENSMUSP00000146136 TRANSLATION protein_coding - - 1 140.0 0.0 3.58 0.0 53.1 0.0 -4,-2 0.0037 8 10.86 MINOR ENSMUSG00000090862 Rps13 ENSMUST00000205906 ENSMUSP00000146272 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 1.58 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000090862 Rps13 ENSMUST00000206748 - NO_TRANSLATION retained_intron ENSMUSG00000090862 Rps13 ENSMUST00000205548 - NO_TRANSLATION retained_intron ENSMUSG00000090862 Rps13 ENSMUST00000206712 - NO_TRANSLATION retained_intron ENSMUSG00000090862 Rps13 ENSMUST00000170953 ENSMUSP00000126294 TRANSLATION protein_coding - CCDS52370.1 1 151.0 0.0 3.91 34.9 57.7 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000090862 Rps13 ENSMUST00000205265 - NO_TRANSLATION retained_intron ENSMUSG00000090862 Rps13 ENSMUST00000206963 - NO_TRANSLATION retained_intron ENSMUSG00000001248 Gramd1a ENSMUST00000206233 ENSMUSP00000146045 TRANSLATION nonsense_mediated_decay start - 5 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001248 Gramd1a ENSMUST00000186634 ENSMUSP00000140195 TRANSLATION nonsense_mediated_decay - - 1 494.0 0.0 5.826 0.0 186.6 0.0 -4,-2 0.0046 7 -2.0 MINOR ENSMUSG00000001248 Gramd1a ENSMUST00000001280 ENSMUSP00000001280 TRANSLATION protein_coding - CCDS52189.1 1 722.0 0.0 7.276 6.4 213.9 1.0 -4,-2 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000001248 Gramd1a ENSMUST00000206432 ENSMUSP00000146147 TRANSLATION nonsense_mediated_decay start - 3 138.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001248 Gramd1a ENSMUST00000188032 - NO_TRANSLATION retained_intron ENSMUSG00000001248 Gramd1a ENSMUST00000185985 - NO_TRANSLATION retained_intron ENSMUSG00000001248 Gramd1a ENSMUST00000187679 ENSMUSP00000140674 TRANSLATION protein_coding stop - 3 161.0 0.0 2.166 0.0 96.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001248 Gramd1a ENSMUST00000185514 ENSMUSP00000139681 TRANSLATION nonsense_mediated_decay - - 5 123.0 0.0 0.45 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000001248 Gramd1a ENSMUST00000202814 ENSMUSP00000144034 TRANSLATION protein_coding start/stop - 5 255.0 0.0 3.11 0.0 36.2 1.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000001248 Gramd1a ENSMUST00000186723 ENSMUSP00000139709 TRANSLATION protein_coding stop - 5 224.0 0.0 1.266 0.0 50.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000001248 Gramd1a ENSMUST00000085636 ENSMUSP00000082778 TRANSLATION protein_coding - - 5 688.0 0.0 6.276 0.0 186.1 1.0 -4,-2 0.0185 8 8.334 MINOR ENSMUSG00000001248 Gramd1a ENSMUST00000220635 ENSMUSP00000152547 TRANSLATION protein_coding start - 3 177.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0007 1 -2.0 MINOR ENSMUSG00000001248 Gramd1a ENSMUST00000205298 - NO_TRANSLATION retained_intron ENSMUSG00000001248 Gramd1a ENSMUST00000185589 - NO_TRANSLATION retained_intron ENSMUSG00000032777 Gtf3c1 ENSMUST00000206127 ENSMUSP00000145607 TRANSLATION protein_coding stop - 5 193.0 0.0 0.0 0.0 76.5 0.0 -4,-5 0.0356 3 -2.0 MINOR ENSMUSG00000032777 Gtf3c1 ENSMUST00000206042 - NO_TRANSLATION retained_intron ENSMUSG00000032777 Gtf3c1 ENSMUST00000205659 ENSMUSP00000145939 TRANSLATION protein_coding - - 5 2005.0 0.0 0.0 0.0 76.5 0.0 -4,-5 0.3146 36 2.0 ALTERNATIVE:2 ENSMUSG00000032777 Gtf3c1 ENSMUST00000206183 ENSMUSP00000146022 TRANSLATION nonsense_mediated_decay start - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.008 - -2.0 MINOR ENSMUSG00000032777 Gtf3c1 ENSMUST00000206694 ENSMUSP00000145711 TRANSLATION nonsense_mediated_decay start - 3 147.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000032777 Gtf3c1 ENSMUST00000055506 ENSMUSP00000056719 TRANSLATION protein_coding - CCDS40122.1 1 2101.0 0.0 0.0 0.1 76.5 0.0 -4,-5 1.0 39 2.0 PRINCIPAL:2 ENSMUSG00000032777 Gtf3c1 ENSMUST00000205827 - NO_TRANSLATION retained_intron ENSMUSG00000032777 Gtf3c1 ENSMUST00000205347 - NO_TRANSLATION retained_intron ENSMUSG00000032777 Gtf3c1 ENSMUST00000205444 ENSMUSP00000145856 TRANSLATION nonsense_mediated_decay - - 1 294.0 0.0 0.0 0.0 76.5 0.0 -4,-5 0.052 6 -2.0 MINOR ENSMUSG00000032777 Gtf3c1 ENSMUST00000205697 - NO_TRANSLATION retained_intron ENSMUSG00000058420 Syt17 ENSMUST00000203465 ENSMUSP00000147122 TRANSLATION protein_coding start - 1 469.0 7.0 3.1 3.0 139.0 0.0 -4,-7 0.3827 11 -2.0 MINOR ENSMUSG00000058420 Syt17 ENSMUST00000207034 ENSMUSP00000146460 TRANSLATION protein_coding stop - 5 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058420 Syt17 ENSMUST00000203796 ENSMUSP00000145087 TRANSLATION protein_coding - - 1 413.0 7.0 3.1 7.3 139.3 0.0 -4,-5 0.7302 11 16.625 ALTERNATIVE:1 ENSMUSG00000058420 Syt17 ENSMUST00000203485 ENSMUSP00000144987 TRANSLATION protein_coding - - 1 419.0 7.0 2.6 0.0 118.7 0.0 -4,-5 0.0063 9 12.998 MINOR ENSMUSG00000058420 Syt17 ENSMUST00000081574 ENSMUSP00000080284 TRANSLATION protein_coding - CCDS40103.1 1 470.0 7.0 3.1 8.2 139.0 0.0 -4,-5 1.0 11 17.0 PRINCIPAL:2 ENSMUSG00000058420 Syt17 ENSMUST00000207650 - NO_TRANSLATION retained_intron ENSMUSG00000039990 Edrf1 ENSMUST00000154795 - NO_TRANSLATION retained_intron ENSMUSG00000039990 Edrf1 ENSMUST00000051169 ENSMUSP00000059166 TRANSLATION protein_coding - CCDS21932.2 1 1240.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.7239 14 0.417 ALTERNATIVE:2 ENSMUSG00000039990 Edrf1 ENSMUST00000176661 ENSMUSP00000134967 TRANSLATION protein_coding start - 5 127.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0179 2 -2.0 MINOR ENSMUSG00000039990 Edrf1 ENSMUST00000128901 ENSMUSP00000115641 TRANSLATION protein_coding - - 5 1206.0 0.0 0.0 2.2 0.0 0.0 -4,-5 1.0 13 1.0 PRINCIPAL:2 ENSMUSG00000039990 Edrf1 ENSMUST00000138370 ENSMUSP00000134801 TRANSLATION nonsense_mediated_decay start - 3 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0179 2 -2.0 MINOR ENSMUSG00000039990 Edrf1 ENSMUST00000137338 - NO_TRANSLATION retained_intron ENSMUSG00000039990 Edrf1 ENSMUST00000211072 - NO_TRANSLATION retained_intron ENSMUSG00000030666 Calcb ENSMUST00000032902 ENSMUSP00000032902 TRANSLATION protein_coding - CCDS21764.1 1 130.0 0.0 0.8 9.2 152.5 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030666 Calcb ENSMUST00000182816 ENSMUSP00000138713 TRANSLATION protein_coding - - 5 156.0 0.0 0.8 0.3 148.5 0.0 4,-1 0.1023 - 11.76 MINOR ENSMUSG00000030666 Calcb ENSMUST00000182044 ENSMUSP00000138590 TRANSLATION protein_coding stop - 3 51.0 0.0 0.0 0.0 42.0 0.0 4,-1 0.002 - -2.0 MINOR ENSMUSG00000031021 Tmem9b ENSMUST00000033333 ENSMUSP00000033333 TRANSLATION protein_coding - CCDS21738.1 1 199.0 0.0 3.33 11.2 185.8 1.0 3,-2 1.0 3 14.661 PRINCIPAL:1 ENSMUSG00000031021 Tmem9b ENSMUST00000118571 ENSMUSP00000113175 TRANSLATION protein_coding - - 1 124.0 0.0 2.0 12.5 159.7 1.0 -4,-6 0.64 1 10.776 MINOR ENSMUSG00000031021 Tmem9b ENSMUST00000128043 ENSMUSP00000121220 TRANSLATION protein_coding stop - 3 91.0 0.0 1.83 0.0 0.0 0.0 -3,1 0.0 2 -2.0 MINOR ENSMUSG00000059975 Zfp74 ENSMUST00000108211 ENSMUSP00000103846 TRANSLATION protein_coding - - 1 153.0 0.0 1.6 0.0 90.8 0.0 -4,-5 0.0 - 3.69 MINOR ENSMUSG00000059975 Zfp74 ENSMUST00000108212 ENSMUSP00000103847 TRANSLATION protein_coding - - 1 153.0 0.0 1.6 0.0 90.8 0.0 -4,-5 0.0 - 3.69 MINOR ENSMUSG00000059975 Zfp74 ENSMUST00000149793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059975 Zfp74 ENSMUST00000108205 ENSMUSP00000103840 TRANSLATION protein_coding - CCDS39874.1 1 679.0 72.0 2.6 0.1 523.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000059975 Zfp74 ENSMUST00000032797 ENSMUSP00000032797 TRANSLATION protein_coding - CCDS39874.1 5 679.0 72.0 2.6 0.1 523.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030706 Mrpl48 ENSMUST00000146003 ENSMUSP00000146539 TRANSLATION protein_coding - - 1 113.0 0.0 2.733 1.1 50.4 0.0 -4,-7 0.0306 5 9.489 MINOR ENSMUSG00000030706 Mrpl48 ENSMUST00000208916 - NO_TRANSLATION retained_intron ENSMUSG00000030706 Mrpl48 ENSMUST00000150042 ENSMUSP00000116090 TRANSLATION protein_coding - CCDS21502.2 1 211.0 0.0 3.533 12.7 59.7 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000030706 Mrpl48 ENSMUST00000138448 ENSMUSP00000146663 TRANSLATION protein_coding stop - 3 51.0 0.0 1.205 0.0 22.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000030706 Mrpl48 ENSMUST00000137777 ENSMUSP00000146371 TRANSLATION protein_coding stop - 3 74.0 0.0 1.858 0.0 35.2 0.0 -4,-7 0.0008 3 -2.0 MINOR ENSMUSG00000030706 Mrpl48 ENSMUST00000064334 ENSMUSP00000067290 TRANSLATION protein_coding - - - 102.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000030706 Mrpl48 ENSMUST00000132888 ENSMUSP00000146661 TRANSLATION protein_coding stop - 5 59.0 0.0 1.358 0.0 26.7 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000030706 Mrpl48 ENSMUST00000107053 ENSMUSP00000146654 TRANSLATION nonsense_mediated_decay start - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000030706 Mrpl48 ENSMUST00000152876 ENSMUSP00000117055 TRANSLATION protein_coding stop - 3 113.0 0.0 1.13 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030706 Mrpl48 ENSMUST00000127253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032776 Mctp2 ENSMUST00000206976 - NO_TRANSLATION retained_intron ENSMUSG00000032776 Mctp2 ENSMUST00000206466 ENSMUSP00000145868 TRANSLATION protein_coding start - 5 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032776 Mctp2 ENSMUST00000206755 - NO_TRANSLATION retained_intron ENSMUSG00000032776 Mctp2 ENSMUST00000079323 ENSMUSP00000078302 TRANSLATION protein_coding - CCDS21361.1 1 878.0 8.0 6.55 11.8 194.8 0.0 -4,-6 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000032776 Mctp2 ENSMUST00000205410 ENSMUSP00000145571 TRANSLATION nonsense_mediated_decay start - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000094149 Vmn1r252 ENSMUST00000167253 ENSMUSP00000129429 TRANSLATION protein_coding - CCDS52112.1 - 306.0 0.0 0.0 0.4 58.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070425 Xntrpc ENSMUST00000084843 ENSMUSP00000081903 TRANSLATION protein_coding,RT - CCDS21524.2 5 1264.0 4.0 10.415 1.1 340.2 0.0 -4,-6 0.9093 - -2.0 PRINCIPAL:5 ENSMUSG00000070425 Xntrpc ENSMUST00000123372 ENSMUSP00000121068 TRANSLATION nonsense_mediated_decay,RT - CCDS72002.1 2 405.0 8.0 4.0 3.9 177.5 0.0 -4,-6 1.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000070425 Xntrpc ENSMUST00000139104 ENSMUSP00000122430 TRANSLATION nonsense_mediated_decay,RT start - 2 171.0 0.0 1.75 0.0 65.9 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000070425 Xntrpc ENSMUST00000155078 ENSMUSP00000123466 TRANSLATION nonsense_mediated_decay,RT start - 2 173.0 0.0 1.75 0.0 67.1 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000030604 Zfp626 ENSMUST00000080175 ENSMUSP00000079068 TRANSLATION protein_coding stop - 5 272.0 23.0 1.33 0.0 85.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030604 Zfp626 ENSMUST00000205671 ENSMUSP00000146286 TRANSLATION protein_coding - CCDS85250.1 1 676.0 70.0 2.83 0.1 337.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000049123 Catsperg2 ENSMUST00000207251 - NO_TRANSLATION retained_intron ENSMUSG00000049123 Catsperg2 ENSMUST00000208607 ENSMUSP00000146678 TRANSLATION nonsense_mediated_decay - - 2 788.0 0.0 0.0 0.0 1538.6 0.0 0,-1 0.0929 - -2.0 MINOR ENSMUSG00000049123 Catsperg2 ENSMUST00000209126 ENSMUSP00000147099 TRANSLATION protein_coding - CCDS52173.1 1 1145.0 0.0 0.0 0.1 1919.9 1.0 0,-1 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000049123 Catsperg2 ENSMUST00000061193 ENSMUSP00000052285 TRANSLATION protein_coding - CCDS52173.1 5 1145.0 0.0 0.0 0.1 1919.9 1.0 0,-1 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000049123 Catsperg2 ENSMUST00000207483 - NO_TRANSLATION retained_intron ENSMUSG00000049123 Catsperg2 ENSMUST00000208371 ENSMUSP00000146472 TRANSLATION nonsense_mediated_decay - - 5 341.0 0.0 0.0 0.0 535.6 0.0 -4,-7 0.0075 1 -2.0 MINOR ENSMUSG00000049123 Catsperg2 ENSMUST00000207130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049123 Catsperg2 ENSMUST00000207115 ENSMUSP00000147029 TRANSLATION nonsense_mediated_decay - - 5 800.0 0.0 0.0 0.0 839.6 0.0 -4,-6 0.0663 1 -2.0 MINOR ENSMUSG00000049123 Catsperg2 ENSMUST00000208345 - NO_TRANSLATION retained_intron ENSMUSG00000035298 Klhl35 ENSMUST00000152424 ENSMUSP00000120346 TRANSLATION protein_coding start - 3 146.0 0.0 1.5 0.0 46.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035298 Klhl35 ENSMUST00000142339 - NO_TRANSLATION retained_intron ENSMUSG00000035298 Klhl35 ENSMUST00000037359 ENSMUSP00000041363 TRANSLATION protein_coding - CCDS52320.1 1 574.0 0.0 7.83 4.4 293.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035298 Klhl35 ENSMUST00000153736 ENSMUSP00000117088 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 1.066 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063823 Or13a21 ENSMUST00000073226 ENSMUSP00000072959 TRANSLATION protein_coding - CCDS21976.1 - 309.0 0.0 1.0 5.4 172.3 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063823 Or13a21 ENSMUST00000213172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063823 Or13a21 ENSMUST00000213801 ENSMUSP00000150798 TRANSLATION protein_coding - CCDS21976.1 5 309.0 0.0 1.0 5.4 172.3 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094426 Or5p6 ENSMUST00000210173 ENSMUSP00000147713 TRANSLATION protein_coding - CCDS21700.1 3 314.0 0.0 1.0 6.3 181.4 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094426 Or5p6 ENSMUST00000049719 ENSMUSP00000058931 TRANSLATION protein_coding - CCDS21700.1 - 314.0 0.0 1.0 6.3 181.4 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000006651 Aplp1 ENSMUST00000209054 - NO_TRANSLATION retained_intron ENSMUSG00000006651 Aplp1 ENSMUST00000208404 - NO_TRANSLATION retained_intron ENSMUSG00000006651 Aplp1 ENSMUST00000006828 ENSMUSP00000006828 TRANSLATION protein_coding - CCDS21092.1 1 654.0 0.0 8.45 5.1 495.7 0.0 -2,-3 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000006651 Aplp1 ENSMUST00000207514 - NO_TRANSLATION retained_intron ENSMUSG00000006651 Aplp1 ENSMUST00000208792 - NO_TRANSLATION retained_intron ENSMUSG00000030852 Tacc2 ENSMUST00000207549 ENSMUSP00000146840 TRANSLATION protein_coding - - 1 568.0 0.0 5.5 3.4 0.0 0.0 -4,-6 1.0 15 7.0 ALTERNATIVE:2 ENSMUSG00000030852 Tacc2 ENSMUST00000207918 ENSMUSP00000146419 TRANSLATION protein_coding stop - 5 1919.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2366 39 -2.0 MINOR ENSMUSG00000030852 Tacc2 ENSMUST00000208661 - NO_TRANSLATION retained_intron ENSMUSG00000030852 Tacc2 ENSMUST00000207230 - NO_TRANSLATION retained_intron ENSMUSG00000030852 Tacc2 ENSMUST00000208106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030852 Tacc2 ENSMUST00000207395 ENSMUSP00000146915 TRANSLATION protein_coding start - 1 829.0 0.0 5.5 0.0 0.0 0.0 -4,-2 0.1155 18 -2.0 MINOR ENSMUSG00000030852 Tacc2 ENSMUST00000208743 ENSMUSP00000147134 TRANSLATION nonsense_mediated_decay - - 1 910.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0506 12 -2.0 MINOR ENSMUSG00000030852 Tacc2 ENSMUST00000239258 ENSMUSP00000159277 TRANSLATION protein_coding stop - - 669.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0533 8 -2.0 MINOR ENSMUSG00000030852 Tacc2 ENSMUST00000208882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030852 Tacc2 ENSMUST00000209108 ENSMUSP00000146908 TRANSLATION protein_coding - - 1 555.0 0.0 4.75 0.0 0.0 0.0 -4,-6 0.0807 15 4.5 MINOR ENSMUSG00000030852 Tacc2 ENSMUST00000084513 ENSMUSP00000081561 TRANSLATION protein_coding - CCDS21903.1 5 2879.0 0.0 5.5 0.0 0.0 0.0 -4,-7 0.5051 57 6.0 ALTERNATIVE:2 ENSMUSG00000030852 Tacc2 ENSMUST00000059145 ENSMUSP00000061242 TRANSLATION protein_coding - CCDS21904.1 5 1146.0 0.0 5.5 0.0 0.0 0.0 -4,-7 0.4556 17 6.0 ALTERNATIVE:2 ENSMUSG00000030852 Tacc2 ENSMUST00000207282 ENSMUSP00000146848 TRANSLATION protein_coding - CCDS85432.1 1 947.0 0.0 5.5 2.9 0.0 0.0 -4,-5 0.7835 16 6.792 PRINCIPAL:3 ENSMUSG00000030852 Tacc2 ENSMUST00000207376 ENSMUSP00000147054 TRANSLATION protein_coding start - 5 696.0 0.0 5.5 0.0 0.0 0.0 -4,-5 0.05 18 -2.0 MINOR ENSMUSG00000030852 Tacc2 ENSMUST00000208722 ENSMUSP00000146718 TRANSLATION nonsense_mediated_decay - - 5 1020.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.113 12 -2.0 MINOR ENSMUSG00000030852 Tacc2 ENSMUST00000215492 ENSMUSP00000149733 TRANSLATION protein_coding stop - 5 1770.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.225 39 -2.0 MINOR ENSMUSG00000030852 Tacc2 ENSMUST00000033141 ENSMUSP00000033141 TRANSLATION protein_coding - CCDS21905.1 5 1036.0 0.0 5.5 2.5 0.0 0.0 -4,-5 0.734 17 6.625 ALTERNATIVE:2 ENSMUSG00000030852 Tacc2 ENSMUST00000207789 ENSMUSP00000146690 TRANSLATION nonsense_mediated_decay - - 5 255.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.036 - -2.0 MINOR ENSMUSG00000030852 Tacc2 ENSMUST00000207999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062017 Abca14 ENSMUST00000084640 ENSMUSP00000081690 TRANSLATION protein_coding - CCDS40108.1 1 1683.0 16.0 10.609 0.4 389.4 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000062017 Abca14 ENSMUST00000130646 - NO_TRANSLATION retained_intron ENSMUSG00000062017 Abca14 ENSMUST00000207961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062017 Abca14 ENSMUST00000134268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062017 Abca14 ENSMUST00000143257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059851 Kmt5c ENSMUST00000160480 ENSMUSP00000124663 TRANSLATION nonsense_mediated_decay - - 5 145.0 2.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059851 Kmt5c ENSMUST00000098853 ENSMUSP00000096452 TRANSLATION protein_coding - CCDS20743.2 1 468.0 34.0 6.36 2.4 44.1 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000059851 Kmt5c ENSMUST00000152500 - NO_TRANSLATION retained_intron ENSMUSG00000059851 Kmt5c ENSMUST00000128018 ENSMUSP00000114445 TRANSLATION protein_coding start - 2 147.0 10.0 1.53 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000059851 Kmt5c ENSMUST00000135541 - NO_TRANSLATION retained_intron ENSMUSG00000059851 Kmt5c ENSMUST00000129927 - NO_TRANSLATION retained_intron ENSMUSG00000059851 Kmt5c ENSMUST00000130200 - NO_TRANSLATION retained_intron ENSMUSG00000059851 Kmt5c ENSMUST00000108582 ENSMUSP00000104223 TRANSLATION protein_coding - CCDS20743.2 1 468.0 34.0 6.36 2.4 44.1 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000059851 Kmt5c ENSMUST00000136177 - NO_TRANSLATION retained_intron ENSMUSG00000059851 Kmt5c ENSMUST00000130215 ENSMUSP00000119323 TRANSLATION protein_coding stop - 3 164.0 16.0 4.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000059851 Kmt5c ENSMUST00000152431 - NO_TRANSLATION retained_intron ENSMUSG00000059851 Kmt5c ENSMUST00000108583 ENSMUSP00000104224 TRANSLATION protein_coding - CCDS20743.2 1 468.0 34.0 6.36 2.4 44.1 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000037029 Zfp146 ENSMUST00000208923 - NO_TRANSLATION retained_intron ENSMUSG00000037029 Zfp146 ENSMUST00000062181 ENSMUSP00000058588 TRANSLATION protein_coding - CCDS21079.1 1 292.0 40.0 1.0 10.3 241.3 0.0 -4,-2 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000037029 Zfp146 ENSMUST00000136508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066512 Klk1b5 ENSMUST00000074359 ENSMUSP00000073964 TRANSLATION protein_coding - CCDS21201.1 1 261.0 14.0 4.0 6.8 243.5 0.0 4,-1 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000040268 Plekha1 ENSMUST00000120441 ENSMUSP00000112777 TRANSLATION protein_coding - - 5 334.0 10.0 7.41 4.0 108.0 0.0 -4,-5 0.2225 6 18.768 MINOR ENSMUSG00000040268 Plekha1 ENSMUST00000075181 ENSMUSP00000074675 TRANSLATION protein_coding - CCDS85434.1 1 383.0 10.0 7.278 12.7 108.0 0.0 -4,-5 1.0 8 20.736 PRINCIPAL:1 ENSMUSG00000040268 Plekha1 ENSMUST00000136963 ENSMUSP00000146948 TRANSLATION nonsense_mediated_decay start - 3 71.0 8.0 1.35 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000040268 Plekha1 ENSMUST00000154282 - NO_TRANSLATION retained_intron ENSMUSG00000040268 Plekha1 ENSMUST00000148513 - NO_TRANSLATION retained_intron ENSMUSG00000040268 Plekha1 ENSMUST00000126355 ENSMUSP00000114411 TRANSLATION protein_coding start - 3 155.0 1.0 2.462 0.0 27.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000040268 Plekha1 ENSMUST00000151119 ENSMUSP00000123600 TRANSLATION protein_coding - - 1 316.0 10.0 7.028 0.0 108.0 0.0 -4,-5 0.0101 6 17.238 MINOR ENSMUSG00000040268 Plekha1 ENSMUST00000048180 ENSMUSP00000035375 TRANSLATION protein_coding - CCDS21907.1 1 356.0 10.0 5.628 1.1 67.4 0.0 -4,-5 0.0125 6 12.027 MINOR ENSMUSG00000040268 Plekha1 ENSMUST00000140153 - NO_TRANSLATION retained_intron ENSMUSG00000040268 Plekha1 ENSMUST00000135359 - NO_TRANSLATION retained_intron ENSMUSG00000040268 Plekha1 ENSMUST00000149029 - NO_TRANSLATION retained_intron ENSMUSG00000040268 Plekha1 ENSMUST00000146111 - NO_TRANSLATION retained_intron ENSMUSG00000061787 Rps17 ENSMUST00000134425 - NO_TRANSLATION retained_intron ENSMUSG00000061787 Rps17 ENSMUST00000080813 ENSMUSP00000079628 TRANSLATION protein_coding - CCDS40006.1 1 135.0 0.0 3.5 36.9 233.8 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000061787 Rps17 ENSMUST00000138936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061787 Rps17 ENSMUST00000156346 - NO_TRANSLATION retained_intron ENSMUSG00000061787 Rps17 ENSMUST00000208054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061787 Rps17 ENSMUST00000130487 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038540 Tmc3 ENSMUST00000039317 ENSMUSP00000046028 TRANSLATION protein_coding - CCDS40012.1 1 1130.0 0.0 0.0 0.1 137.5 7.0 -4,-2 0.4792 - 6.0 MINOR ENSMUSG00000038540 Tmc3 ENSMUST00000171397 - NO_TRANSLATION retained_intron ENSMUSG00000038540 Tmc3 ENSMUST00000163297 - NO_TRANSLATION retained_intron ENSMUSG00000038540 Tmc3 ENSMUST00000165388 - NO_TRANSLATION retained_intron ENSMUSG00000038540 Tmc3 ENSMUST00000164944 ENSMUSP00000130348 TRANSLATION protein_coding - - 5 1101.0 0.0 0.0 5.9 137.5 7.0 -4,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000070604 Vsig10l ENSMUST00000203042 ENSMUSP00000145378 TRANSLATION nonsense_mediated_decay start - 3 34.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070604 Vsig10l ENSMUST00000205247 - NO_TRANSLATION retained_intron ENSMUSG00000070604 Vsig10l ENSMUST00000203152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070604 Vsig10l ENSMUST00000203769 ENSMUSP00000144692 TRANSLATION protein_coding - CCDS85281.1 1 766.0 0.0 2.062 0.0 57.1 1.0 -2,-5 1.0 7 8.0 PRINCIPAL:2 ENSMUSG00000070604 Vsig10l ENSMUST00000107977 ENSMUSP00000103611 TRANSLATION protein_coding - - 5 868.0 0.0 2.062 0.0 57.1 1.0 2,-2 0.2372 7 8.0 ALTERNATIVE:2 ENSMUSG00000054555 Adam12 ENSMUST00000154144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054555 Adam12 ENSMUST00000206426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054555 Adam12 ENSMUST00000134504 ENSMUSP00000123161 TRANSLATION protein_coding stop - 5 189.0 1.0 0.4 0.0 100.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054555 Adam12 ENSMUST00000206313 - NO_TRANSLATION retained_intron ENSMUSG00000054555 Adam12 ENSMUST00000138363 ENSMUSP00000114874 TRANSLATION protein_coding start - 1 581.0 21.0 5.816 0.0 269.9 1.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000054555 Adam12 ENSMUST00000067680 ENSMUSP00000065213 TRANSLATION protein_coding - CCDS21938.1 1 903.0 25.0 8.3 0.0 533.0 1.0 1,1 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000054555 Adam12 ENSMUST00000127524 ENSMUSP00000120094 TRANSLATION protein_coding stop - 3 168.0 0.0 0.0 0.0 100.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055200 Sertad3 ENSMUST00000068641 ENSMUSP00000068187 TRANSLATION protein_coding - CCDS21021.1 1 197.0 0.0 0.0 11.0 51.3 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000061000 Or5p79 ENSMUST00000080014 ENSMUSP00000078926 TRANSLATION protein_coding - CCDS21721.1 - 316.0 0.0 1.0 11.4 172.4 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052605 Isoc2b ENSMUST00000207502 - NO_TRANSLATION retained_intron ENSMUSG00000052605 Isoc2b ENSMUST00000064547 ENSMUSP00000066859 TRANSLATION protein_coding - CCDS20748.1 1 210.0 1.0 4.75 0.4 0.0 0.0 -4,-7 0.9754 7 6.0 PRINCIPAL:1 ENSMUSG00000052605 Isoc2b ENSMUST00000208173 - NO_TRANSLATION retained_intron ENSMUSG00000052605 Isoc2b ENSMUST00000208816 ENSMUSP00000147085 TRANSLATION protein_coding - CCDS20748.1 3 210.0 1.0 4.75 0.4 0.0 0.0 -4,-7 0.9754 7 6.0 PRINCIPAL:1 ENSMUSG00000052605 Isoc2b ENSMUST00000207699 - NO_TRANSLATION retained_intron ENSMUSG00000090774 Vmn2r74 ENSMUST00000232758 ENSMUSP00000156482 TRANSLATION protein_coding - - - 829.0 4.0 1.865 0.0 328.0 9.0 -2,-5 0.093 - 11.166 MINOR ENSMUSG00000090774 Vmn2r74 ENSMUST00000233635 ENSMUSP00000156617 TRANSLATION nonsense_mediated_decay - - - 77.0 0.0 0.1 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000090774 Vmn2r74 ENSMUST00000166355 ENSMUSP00000126917 TRANSLATION protein_coding - CCDS52296.1 5 853.0 4.0 2.165 0.0 350.0 9.0 -2,-5 0.7809 - 12.0 ALTERNATIVE:2 ENSMUSG00000090774 Vmn2r74 ENSMUST00000232886 ENSMUSP00000156918 TRANSLATION protein_coding - - - 850.0 4.0 2.165 0.0 351.3 9.0 -2,-5 0.8576 - 12.0 PRINCIPAL:4 ENSMUSG00000064179 Tnnt1 ENSMUST00000169571 - NO_TRANSLATION retained_intron ENSMUSG00000064179 Tnnt1 ENSMUST00000163538 ENSMUSP00000127964 TRANSLATION protein_coding stop - 5 168.0 0.0 1.83 0.0 91.9 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000064179 Tnnt1 ENSMUST00000163560 ENSMUSP00000132012 TRANSLATION protein_coding stop - 5 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000064179 Tnnt1 ENSMUST00000166959 ENSMUSP00000129109 TRANSLATION protein_coding stop - 5 191.0 0.0 2.58 0.0 102.2 0.0 -4,-5 0.0013 1 -2.0 MINOR ENSMUSG00000064179 Tnnt1 ENSMUST00000163710 ENSMUSP00000129626 TRANSLATION protein_coding - CCDS71879.1 1 250.0 0.0 4.58 5.0 120.2 0.0 -4,-5 1.0 4 10.0 PRINCIPAL:2 ENSMUSG00000064179 Tnnt1 ENSMUST00000166268 ENSMUSP00000128476 TRANSLATION protein_coding stop - 5 207.0 0.0 3.58 0.0 120.2 0.0 -4,-5 0.0063 3 -2.0 MINOR ENSMUSG00000064179 Tnnt1 ENSMUST00000071798 ENSMUSP00000071704 TRANSLATION protein_coding - CCDS51973.1 1 261.0 0.0 4.58 0.7 120.2 0.0 -4,-5 0.3203 4 8.0 MINOR ENSMUSG00000064179 Tnnt1 ENSMUST00000108587 ENSMUSP00000104228 TRANSLATION protein_coding - CCDS71880.1 1 262.0 0.0 4.58 0.7 120.2 0.0 -4,-5 0.3144 4 8.0 MINOR ENSMUSG00000064179 Tnnt1 ENSMUST00000163722 ENSMUSP00000129409 TRANSLATION protein_coding stop - 2 118.0 0.0 1.0 0.0 41.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000064179 Tnnt1 ENSMUST00000166161 ENSMUSP00000125795 TRANSLATION protein_coding - - 5 249.0 0.0 4.58 2.8 120.2 0.0 -4,-5 0.6544 4 8.9 ALTERNATIVE:2 ENSMUSG00000064179 Tnnt1 ENSMUST00000168111 - NO_TRANSLATION retained_intron ENSMUSG00000064179 Tnnt1 ENSMUST00000086502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061079 Zfp143 ENSMUST00000211798 ENSMUSP00000148235 TRANSLATION protein_coding - CCDS57580.1 1 637.0 28.0 4.72 20.8 116.7 0.0 -4,-5 1.0 2 17.472 PRINCIPAL:4 ENSMUSG00000061079 Zfp143 ENSMUST00000209505 ENSMUSP00000147673 TRANSLATION protein_coding - CCDS57580.1 1 637.0 28.0 4.72 20.8 116.7 0.0 -4,-5 1.0 2 17.472 PRINCIPAL:4 ENSMUSG00000061079 Zfp143 ENSMUST00000084727 ENSMUSP00000081778 TRANSLATION protein_coding - - 1 638.0 28.0 4.72 23.8 116.7 0.0 -4,-5 0.8879 2 18.0 ALTERNATIVE:1 ENSMUSG00000061079 Zfp143 ENSMUST00000209252 - NO_TRANSLATION retained_intron ENSMUSG00000061079 Zfp143 ENSMUST00000169638 ENSMUSP00000126015 TRANSLATION protein_coding - - 1 610.0 28.0 4.72 4.1 116.7 0.0 -4,-5 0.2307 2 14.544 MINOR ENSMUSG00000073949 Or51l14 ENSMUST00000214631 ENSMUSP00000149577 TRANSLATION protein_coding - CCDS21574.1 5 319.0 0.0 1.0 6.4 384.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073949 Or51l14 ENSMUST00000098200 ENSMUSP00000095802 TRANSLATION protein_coding - CCDS21574.1 - 319.0 0.0 1.0 6.4 384.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073949 Or51l14 ENSMUST00000217250 ENSMUSP00000151177 TRANSLATION protein_coding - CCDS21574.1 5 319.0 0.0 1.0 6.4 384.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058818 Pirb ENSMUST00000129493 - NO_TRANSLATION retained_intron ENSMUSG00000058818 Pirb ENSMUST00000155131 - NO_TRANSLATION retained_intron ENSMUSG00000058818 Pirb ENSMUST00000137474 - NO_TRANSLATION retained_intron ENSMUSG00000058818 Pirb ENSMUST00000078451 ENSMUSP00000077546 TRANSLATION protein_coding - CCDS39730.1 1 841.0 0.0 6.0 0.4 100.2 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000058818 Pirb ENSMUST00000136238 - NO_TRANSLATION retained_intron ENSMUSG00000060601 Nr1h2 ENSMUST00000107912 ENSMUSP00000103545 TRANSLATION protein_coding - CCDS21211.1 1 446.0 8.0 8.0 2.7 188.9 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:2 ENSMUSG00000060601 Nr1h2 ENSMUST00000209017 ENSMUSP00000146826 TRANSLATION protein_coding stop - 3 111.0 8.0 1.5 0.0 91.4 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000060601 Nr1h2 ENSMUST00000128600 ENSMUSP00000146517 TRANSLATION protein_coding stop - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060601 Nr1h2 ENSMUST00000208366 ENSMUSP00000146455 TRANSLATION protein_coding stop - 5 161.0 8.0 2.0 0.0 91.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060601 Nr1h2 ENSMUST00000107911 ENSMUSP00000103544 TRANSLATION protein_coding - CCDS71947.1 1 443.0 8.0 8.0 0.4 188.9 0.0 -4,-5 0.4266 5 14.0 ALTERNATIVE:2 ENSMUSG00000060601 Nr1h2 ENSMUST00000123358 - NO_TRANSLATION retained_intron ENSMUSG00000060601 Nr1h2 ENSMUST00000167197 ENSMUSP00000126788 TRANSLATION protein_coding - CCDS21211.1 5 446.0 8.0 8.0 2.7 188.9 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:2 ENSMUSG00000060601 Nr1h2 ENSMUST00000207550 - NO_TRANSLATION retained_intron ENSMUSG00000060601 Nr1h2 ENSMUST00000136611 - NO_TRANSLATION retained_intron ENSMUSG00000060601 Nr1h2 ENSMUST00000128354 - NO_TRANSLATION retained_intron ENSMUSG00000060601 Nr1h2 ENSMUST00000073488 ENSMUSP00000073188 TRANSLATION protein_coding - CCDS21211.1 1 446.0 8.0 8.0 2.7 188.9 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:2 ENSMUSG00000060601 Nr1h2 ENSMUST00000208322 ENSMUSP00000146466 TRANSLATION protein_coding start - 5 365.0 8.0 7.0 0.0 183.8 0.0 -4,-5 0.0065 4 -2.0 MINOR ENSMUSG00000060601 Nr1h2 ENSMUST00000137674 - NO_TRANSLATION retained_intron ENSMUSG00000060601 Nr1h2 ENSMUST00000142298 ENSMUSP00000147076 TRANSLATION protein_coding stop - 3 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060601 Nr1h2 ENSMUST00000107910 ENSMUSP00000103543 TRANSLATION protein_coding - CCDS71947.1 1 443.0 8.0 8.0 0.4 188.9 0.0 -4,-5 0.4266 5 14.0 ALTERNATIVE:2 ENSMUSG00000060601 Nr1h2 ENSMUST00000207737 ENSMUSP00000146601 TRANSLATION protein_coding stop - 3 54.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000060601 Nr1h2 ENSMUST00000141901 - NO_TRANSLATION retained_intron ENSMUSG00000060601 Nr1h2 ENSMUST00000132769 - NO_TRANSLATION retained_intron ENSMUSG00000020420 Zfp607a ENSMUST00000205534 ENSMUSP00000146261 TRANSLATION protein_coding - CCDS39852.1 1 686.0 72.0 1.0 0.0 355.4 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000020420 Zfp607a ENSMUST00000053722 ENSMUSP00000051496 TRANSLATION protein_coding - CCDS39852.1 5 686.0 72.0 1.0 0.0 355.4 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000020420 Zfp607a ENSMUST00000205715 ENSMUSP00000146006 TRANSLATION protein_coding - CCDS39852.1 5 686.0 72.0 1.0 0.0 355.4 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078606 Gvin2 ENSMUST00000176969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078606 Gvin2 ENSMUST00000176994 ENSMUSP00000135667 TRANSLATION protein_coding stop - 2 108.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0283 - -2.0 MINOR ENSMUSG00000078606 Gvin2 ENSMUST00000106766 ENSMUSP00000102377 TRANSLATION protein_coding - CCDS57577.1 1 2427.0 0.0 0.0 1.5 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000078606 Gvin2 ENSMUST00000176467 ENSMUSP00000135898 TRANSLATION protein_coding - CCDS57577.1 1 2427.0 0.0 0.0 1.5 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000058028 Zscan5b ENSMUST00000072662 ENSMUSP00000072449 TRANSLATION protein_coding - CCDS20772.1 1 468.0 20.0 1.6 0.0 152.7 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000058028 Zscan5b ENSMUST00000165445 ENSMUSP00000126044 TRANSLATION protein_coding - CCDS20772.1 3 468.0 20.0 1.6 0.0 152.7 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000058028 Zscan5b ENSMUST00000155314 ENSMUSP00000118508 TRANSLATION protein_coding stop - 3 142.0 0.0 0.6 0.0 85.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020168 Or14c43 ENSMUST00000217253 ENSMUSP00000149038 TRANSLATION protein_coding - CCDS21430.1 5 330.0 0.0 1.0 0.1 155.9 6.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020168 Or14c43 ENSMUST00000057734 ENSMUSP00000062434 TRANSLATION protein_coding - CCDS21430.1 - 330.0 0.0 1.0 0.1 155.9 6.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055319 Sec23ip ENSMUST00000205856 ENSMUSP00000145816 TRANSLATION nonsense_mediated_decay start - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000055319 Sec23ip ENSMUST00000206986 ENSMUSP00000145911 TRANSLATION protein_coding stop - 2 56.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000055319 Sec23ip ENSMUST00000042942 ENSMUSP00000035610 TRANSLATION protein_coding - CCDS21900.1 1 998.0 0.0 0.8 8.1 238.5 0.0 -4,-2 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000055319 Sec23ip ENSMUST00000206504 - NO_TRANSLATION retained_intron ENSMUSG00000043354 Or51g2 ENSMUST00000051505 ENSMUSP00000059586 TRANSLATION protein_coding - CCDS21556.1 - 312.0 0.0 1.0 5.6 464.7 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043354 Or51g2 ENSMUST00000215237 ENSMUSP00000150712 TRANSLATION protein_coding - CCDS21556.1 5 312.0 0.0 1.0 5.6 464.7 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043354 Or51g2 ENSMUST00000214080 ENSMUSP00000148993 TRANSLATION protein_coding - CCDS21556.1 5 312.0 0.0 1.0 5.6 464.7 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000074155 Klk5 ENSMUST00000205919 ENSMUSP00000145643 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000074155 Klk5 ENSMUST00000048444 ENSMUSP00000049339 TRANSLATION protein_coding - CCDS21185.1 1 293.0 14.0 4.0 6.0 222.8 0.0 4,-1 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000095430 Vmn1r72 ENSMUST00000209638 ENSMUSP00000148081 TRANSLATION protein_coding - CCDS20799.1 3 306.0 0.0 0.0 0.4 85.3 5.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095430 Vmn1r72 ENSMUST00000053134 ENSMUSP00000052997 TRANSLATION protein_coding - CCDS20799.1 - 306.0 0.0 0.0 0.4 85.3 5.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095430 Vmn1r72 ENSMUST00000227010 ENSMUSP00000154511 TRANSLATION protein_coding - CCDS20799.1 - 306.0 0.0 0.0 0.4 85.3 5.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033533 Acsm1 ENSMUST00000047929 ENSMUSP00000036140 TRANSLATION protein_coding - CCDS21783.1 1 573.0 44.0 11.55 2.3 316.7 0.0 -4,0 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000033533 Acsm1 ENSMUST00000126367 ENSMUSP00000114725 TRANSLATION protein_coding stop - 3 174.0 1.0 2.5 0.0 57.1 0.0 -4,0 0.0 4 -2.0 MINOR ENSMUSG00000033533 Acsm1 ENSMUST00000135683 ENSMUSP00000120146 TRANSLATION protein_coding stop - 1 531.0 41.0 10.7 0.0 236.9 0.0 -4,0 0.0061 17 -2.0 MINOR ENSMUSG00000095664 Vmn2r67 ENSMUST00000233656 ENSMUSP00000156949 TRANSLATION nonsense_mediated_decay - - - 255.0 0.0 0.85 0.0 61.3 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000095664 Vmn2r67 ENSMUST00000233789 ENSMUSP00000156928 TRANSLATION nonsense_mediated_decay - - - 234.0 0.0 0.7 0.0 34.1 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000095664 Vmn2r67 ENSMUST00000233734 ENSMUSP00000156643 TRANSLATION protein_coding - - - 830.0 4.0 2.35 0.0 331.4 7.0 -2,-5 0.0759 - 14.062 MINOR ENSMUSG00000095664 Vmn2r67 ENSMUST00000168730 ENSMUSP00000126007 TRANSLATION protein_coding - CCDS52289.1 5 851.0 4.0 2.5 0.3 357.7 7.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095664 Vmn2r67 ENSMUST00000232720 - NO_TRANSLATION retained_intron ENSMUSG00000058631 Vmn1r63 ENSMUST00000075085 ENSMUSP00000074593 TRANSLATION protein_coding - CCDS20765.1 1 300.0 0.0 0.0 0.0 58.1 0.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030823 9130019O22Rik ENSMUST00000049052 ENSMUSP00000038195 TRANSLATION protein_coding - CCDS40143.1 1 543.0 52.0 0.8 0.0 355.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030823 9130019O22Rik ENSMUST00000164345 ENSMUSP00000131610 TRANSLATION protein_coding - - 1 89.0 0.0 0.0 0.0 26.6 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000042246 Tmc7 ENSMUST00000153635 - NO_TRANSLATION retained_intron ENSMUSG00000042246 Tmc7 ENSMUST00000145989 - NO_TRANSLATION retained_intron ENSMUSG00000042246 Tmc7 ENSMUST00000044195 ENSMUSP00000046927 TRANSLATION protein_coding - CCDS21772.1 1 726.0 0.0 0.0 5.2 164.6 0.0 -4,-7 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000042246 Tmc7 ENSMUST00000139693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030562 Nox4 ENSMUST00000126887 ENSMUSP00000138336 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 1.0 0.0 0.0 4.0 0,-3 0.0039 - -2.0 MINOR ENSMUSG00000030562 Nox4 ENSMUST00000068829 ENSMUSP00000070039 TRANSLATION protein_coding - - 1 592.0 1.0 8.8935 0.0 83.9 12.0 0,-3 0.1526 - 11.202 MINOR ENSMUSG00000030562 Nox4 ENSMUST00000124269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030562 Nox4 ENSMUST00000124057 ENSMUSP00000119365 TRANSLATION protein_coding stop - 3 157.0 1.0 2.78 0.0 30.2 9.0 -4,-7 0.0021 - -2.0 MINOR ENSMUSG00000030562 Nox4 ENSMUST00000136577 ENSMUSP00000138274 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 1.0 0.0 0.0 4.0 0,-3 0.0039 - -2.0 MINOR ENSMUSG00000030562 Nox4 ENSMUST00000144267 ENSMUSP00000138143 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 1.0 0.0 0.0 4.0 0,-3 0.0039 - -2.0 MINOR ENSMUSG00000030562 Nox4 ENSMUST00000127138 - NO_TRANSLATION retained_intron ENSMUSG00000030562 Nox4 ENSMUST00000032781 ENSMUSP00000032781 TRANSLATION protein_coding - CCDS21437.1 1 578.0 1.0 9.2935 18.3 83.9 12.0 0,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000045236 Krtap5-4 ENSMUST00000061403 ENSMUSP00000059461 TRANSLATION protein_coding - CCDS22027.1 - 223.0 0.0 0.0 0.0 48.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030417 Pdcd5 ENSMUST00000120714 ENSMUSP00000113013 TRANSLATION protein_coding - - 3 205.0 0.0 3.1 0.0 107.1 0.0 -4,-1 0.0003 5 9.972 MINOR ENSMUSG00000030417 Pdcd5 ENSMUST00000126734 - NO_TRANSLATION retained_intron ENSMUSG00000030417 Pdcd5 ENSMUST00000130340 - NO_TRANSLATION retained_intron ENSMUSG00000030417 Pdcd5 ENSMUST00000151336 - NO_TRANSLATION retained_intron ENSMUSG00000030417 Pdcd5 ENSMUST00000130306 - NO_TRANSLATION retained_intron ENSMUSG00000030417 Pdcd5 ENSMUST00000127213 - NO_TRANSLATION retained_intron ENSMUSG00000030417 Pdcd5 ENSMUST00000118501 ENSMUSP00000113761 TRANSLATION protein_coding - CCDS52203.1 1 126.0 0.0 3.85 30.2 115.9 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000030772 Dkk3 ENSMUST00000033036 ENSMUSP00000033036 TRANSLATION protein_coding - CCDS21752.1 1 349.0 0.0 0.65 5.8 58.7 0.0 1,-3 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000030980 Knop1 ENSMUST00000106550 ENSMUSP00000102160 TRANSLATION protein_coding - - 1 480.0 0.0 0.2 0.0 45.4 0.0 -4,-5 0.794 7 8.0 PRINCIPAL:2 ENSMUSG00000030980 Knop1 ENSMUST00000063607 ENSMUSP00000068142 TRANSLATION protein_coding - CCDS52375.1 1 318.0 0.0 0.2 0.0 45.4 0.0 -4,-5 0.3646 4 8.0 ALTERNATIVE:2 ENSMUSG00000030980 Knop1 ENSMUST00000126792 ENSMUSP00000114727 TRANSLATION protein_coding - - 1 295.0 0.0 0.2 0.0 45.4 0.0 -4,-5 0.0884 4 8.0 ALTERNATIVE:2 ENSMUSG00000030980 Knop1 ENSMUST00000033277 ENSMUSP00000033277 TRANSLATION protein_coding - - 5 153.0 0.0 0.2 0.0 45.4 0.0 -4,-5 0.0748 - 8.0 ALTERNATIVE:2 ENSMUSG00000030980 Knop1 ENSMUST00000152309 ENSMUSP00000117151 TRANSLATION protein_coding stop - 5 192.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030980 Knop1 ENSMUST00000106549 ENSMUSP00000102159 TRANSLATION protein_coding - CCDS52375.1 1 318.0 0.0 0.2 0.0 45.4 0.0 -4,-5 0.3646 4 8.0 ALTERNATIVE:2 ENSMUSG00000074366 Obox5 ENSMUST00000098802 ENSMUSP00000096400 TRANSLATION protein_coding - CCDS39777.1 1 291.0 0.0 2.0 0.0 63.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074366 Obox5 ENSMUST00000173455 ENSMUSP00000134468 TRANSLATION protein_coding stop - 1 178.0 0.0 2.0 0.0 63.3 0.0 -4,-5 0.0139 - -2.0 MINOR ENSMUSG00000074366 Obox5 ENSMUST00000173053 ENSMUSP00000134618 TRANSLATION protein_coding stop - 5 180.0 0.0 2.0 0.0 63.3 0.0 -4,-5 0.0139 - -2.0 MINOR ENSMUSG00000032725 Folr2 ENSMUST00000094141 ENSMUSP00000091692 TRANSLATION protein_coding - CCDS21516.1 1 251.0 19.0 5.5 2.6 205.4 0.0 3,-1 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000032725 Folr2 ENSMUST00000211566 ENSMUSP00000147283 TRANSLATION protein_coding stop - 3 87.0 0.0 1.42 0.0 39.9 0.0 3,-1 0.0008 1 -2.0 MINOR ENSMUSG00000032725 Folr2 ENSMUST00000211604 - NO_TRANSLATION retained_intron ENSMUSG00000032725 Folr2 ENSMUST00000210598 ENSMUSP00000147920 TRANSLATION protein_coding - CCDS21516.1 1 251.0 19.0 5.5 2.6 205.4 0.0 3,-1 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000032725 Folr2 ENSMUST00000209329 ENSMUSP00000148085 TRANSLATION protein_coding stop - 3 177.0 16.0 4.5 0.0 174.8 0.0 3,-1 0.0018 6 -2.0 MINOR ENSMUSG00000074283 Zfp109 ENSMUST00000206362 ENSMUSP00000146043 TRANSLATION protein_coding - CCDS39827.1 1 644.0 52.0 1.0 0.0 345.4 0.0 -4,-5 0.5478 - 14.0 ALTERNATIVE:2 ENSMUSG00000074283 Zfp109 ENSMUST00000206960 ENSMUSP00000145925 TRANSLATION protein_coding - - 1 652.0 52.0 1.0 0.0 345.4 0.0 -4,-6 0.8477 - 14.0 PRINCIPAL:2 ENSMUSG00000074283 Zfp109 ENSMUST00000037448 ENSMUSP00000045498 TRANSLATION protein_coding - CCDS39827.1 5 644.0 52.0 1.0 0.0 345.4 0.0 -4,-5 0.5478 - 14.0 ALTERNATIVE:2 ENSMUSG00000056863 Or13n4 ENSMUST00000219803 ENSMUSP00000151862 TRANSLATION protein_coding - CCDS21673.1 5 318.0 0.0 2.0 2.6 179.6 9.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056863 Or13n4 ENSMUST00000208864 ENSMUSP00000146445 TRANSLATION protein_coding stop - 3 124.0 0.0 1.0 0.0 61.8 5.0 -4,-5 0.0041 - -2.0 MINOR ENSMUSG00000056863 Or13n4 ENSMUST00000208895 ENSMUSP00000147225 TRANSLATION protein_coding stop - - 125.0 0.0 1.0 0.0 63.8 5.0 -4,-5 0.0041 - -2.0 MINOR ENSMUSG00000056863 Or13n4 ENSMUST00000080899 ENSMUSP00000079704 TRANSLATION protein_coding - CCDS21673.1 5 318.0 0.0 2.0 2.6 179.6 9.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000008036 Ap2s1 ENSMUST00000205673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008036 Ap2s1 ENSMUST00000205607 ENSMUSP00000146195 TRANSLATION protein_coding - - 3 92.0 0.0 2.75 1.1 135.2 0.0 -4,-7 0.0034 - 5.55 MINOR ENSMUSG00000008036 Ap2s1 ENSMUST00000086112 ENSMUSP00000083281 TRANSLATION protein_coding - CCDS52042.1 1 142.0 0.0 3.75 29.9 209.6 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000008036 Ap2s1 ENSMUST00000205590 ENSMUSP00000146095 TRANSLATION nonsense_mediated_decay - - 3 60.0 0.0 1.0 0.0 65.3 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000008036 Ap2s1 ENSMUST00000141496 - NO_TRANSLATION retained_intron ENSMUSG00000000244 Tspan32 ENSMUST00000105924 ENSMUSP00000101544 TRANSLATION protein_coding - - 1 179.0 0.0 1.01 0.0 0.0 11.0 -4,-6 0.0401 - 5.226 ALTERNATIVE:2 ENSMUSG00000000244 Tspan32 ENSMUST00000105923 ENSMUSP00000101543 TRANSLATION protein_coding - CCDS52461.1 1 167.0 0.0 0.61 0.0 0.0 11.0 -4,-6 0.1817 - 3.156 MINOR ENSMUSG00000000244 Tspan32 ENSMUST00000141186 - NO_TRANSLATION retained_intron ENSMUSG00000000244 Tspan32 ENSMUST00000105925 ENSMUSP00000101545 TRANSLATION protein_coding - - 1 145.0 0.0 0.61 0.0 0.0 11.0 -4,-6 0.0349 - 3.156 MINOR ENSMUSG00000000244 Tspan32 ENSMUST00000075172 ENSMUSP00000074667 TRANSLATION protein_coding - CCDS22037.1 1 229.0 0.0 1.16 0.0 0.0 15.0 -4,-6 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000000244 Tspan32 ENSMUST00000154264 - NO_TRANSLATION retained_intron ENSMUSG00000000244 Tspan32 ENSMUST00000143512 ENSMUSP00000115344 TRANSLATION protein_coding start/stop - 5 185.0 0.0 0.71 0.0 0.0 10.0 -4,-7 0.0512 - -2.0 MINOR ENSMUSG00000000244 Tspan32 ENSMUST00000207211 ENSMUSP00000146865 TRANSLATION protein_coding - - 5 141.0 0.0 0.25 0.0 0.0 10.0 -4,-7 0.047 - 1.296 MINOR ENSMUSG00000000244 Tspan32 ENSMUST00000009396 ENSMUSP00000009396 TRANSLATION protein_coding - CCDS52459.1 1 256.0 0.0 1.16 0.1 0.0 16.0 1,-4 0.551 - 6.0 ALTERNATIVE:2 ENSMUSG00000000244 Tspan32 ENSMUST00000082008 ENSMUSP00000080668 TRANSLATION protein_coding - CCDS52460.1 1 201.0 0.0 1.01 0.0 0.0 11.0 -4,-6 0.1964 - 5.226 ALTERNATIVE:2 ENSMUSG00000000244 Tspan32 ENSMUST00000207449 - NO_TRANSLATION retained_intron ENSMUSG00000000244 Tspan32 ENSMUST00000145212 ENSMUSP00000116212 TRANSLATION nonsense_mediated_decay - - 1 105.0 0.0 0.55 0.0 0.0 11.0 -4,-6 0.034 - -2.0 MINOR ENSMUSG00000066372 Vmn2r65 ENSMUST00000233469 ENSMUSP00000156680 TRANSLATION protein_coding - - - 578.0 4.0 1.77 0.0 271.2 10.0 3,-2 0.0084 - 9.082 MINOR ENSMUSG00000066372 Vmn2r65 ENSMUST00000044583 ENSMUSP00000036551 TRANSLATION protein_coding - CCDS52288.1 5 845.0 4.0 2.09 0.3 403.2 10.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000066372 Vmn2r65 ENSMUST00000232823 ENSMUSP00000156585 TRANSLATION nonsense_mediated_decay - - - 65.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0016 - -2.0 MINOR ENSMUSG00000066372 Vmn2r65 ENSMUST00000233024 - NO_TRANSLATION retained_intron ENSMUSG00000091002 Tcerg1l ENSMUST00000162222 - NO_TRANSLATION retained_intron ENSMUSG00000091002 Tcerg1l ENSMUST00000160436 ENSMUSP00000124476 TRANSLATION protein_coding - CCDS40167.2 5 590.0 0.0 5.2 0.3 77.3 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091002 Tcerg1l ENSMUST00000161213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096760 Vmn1r248 ENSMUST00000105196 ENSMUSP00000100831 TRANSLATION protein_coding - CCDS52101.1 - 305.0 0.0 0.0 0.4 56.7 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000073856 Iqck ENSMUST00000098087 ENSMUSP00000095693 TRANSLATION protein_coding - - 5 290.0 0.0 4.3 2.8 24.6 0.0 -4,-2 0.9186 - 9.0 ALTERNATIVE:2 ENSMUSG00000073856 Iqck ENSMUST00000132148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073856 Iqck ENSMUST00000106547 ENSMUSP00000102157 TRANSLATION protein_coding - CCDS40105.1 5 287.0 0.0 4.3 2.8 24.6 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000073856 Iqck ENSMUST00000208658 ENSMUSP00000147000 TRANSLATION protein_coding - - - 101.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 - 0.0 MINOR ENSMUSG00000073856 Iqck ENSMUST00000153518 - NO_TRANSLATION retained_intron ENSMUSG00000073856 Iqck ENSMUST00000152136 ENSMUSP00000118456 TRANSLATION nonsense_mediated_decay - - 1 137.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 - -2.0 MINOR ENSMUSG00000030659 Nucb2 ENSMUST00000183335 ENSMUSP00000138757 TRANSLATION nonsense_mediated_decay start - 3 57.0 4.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030659 Nucb2 ENSMUST00000183175 ENSMUSP00000138741 TRANSLATION protein_coding - - 1 420.0 8.0 5.63 12.5 41.9 0.0 3,-2 0.8673 19 15.772 ALTERNATIVE:1 ENSMUSG00000030659 Nucb2 ENSMUST00000032895 ENSMUSP00000032895 TRANSLATION protein_coding - CCDS52372.1 1 420.0 8.0 5.63 13.2 41.9 0.0 3,-2 1.0 20 16.0 PRINCIPAL:3 ENSMUSG00000030659 Nucb2 ENSMUST00000182767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030669 Calca ENSMUST00000205560 - NO_TRANSLATION retained_intron ENSMUSG00000030669 Calca ENSMUST00000032907 ENSMUSP00000032907 TRANSLATION protein_coding - CCDS21763.1 1 136.0 0.0 1.6 0.4 109.1 0.0 3,-2 0.0342 3 8.262 MINOR ENSMUSG00000030669 Calca ENSMUST00000205714 ENSMUSP00000146280 TRANSLATION protein_coding - - 2 76.0 0.0 0.8 0.0 68.6 0.0 3,-2 0.0019 1 3.306 MINOR ENSMUSG00000030669 Calca ENSMUST00000205933 ENSMUSP00000145548 TRANSLATION protein_coding - - 3 76.0 0.0 0.8 0.0 68.6 0.0 3,-2 0.0019 1 3.306 MINOR ENSMUSG00000030669 Calca ENSMUST00000206156 ENSMUSP00000145756 TRANSLATION protein_coding stop - 3 91.0 0.0 0.8 0.0 96.7 0.0 3,-2 0.0014 1 -2.0 MINOR ENSMUSG00000030669 Calca ENSMUST00000032906 ENSMUSP00000032906 TRANSLATION protein_coding - CCDS21762.1 1 128.0 0.0 1.9 27.7 155.6 0.0 3,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030669 Calca ENSMUST00000206853 ENSMUSP00000146328 TRANSLATION protein_coding - CCDS21763.1 2 136.0 0.0 1.6 0.4 109.1 0.0 3,-2 0.0342 3 8.262 MINOR ENSMUSG00000036826 Igflr1 ENSMUST00000043850 ENSMUSP00000042312 TRANSLATION protein_coding - CCDS39886.1 1 345.0 0.0 0.0 0.1 0.0 1.0 3,-2 0.4161 - 0.0 ALTERNATIVE:2 ENSMUSG00000036826 Igflr1 ENSMUST00000172251 ENSMUSP00000132400 TRANSLATION protein_coding - - 1 365.0 0.0 0.0 0.1 0.0 1.0 -2,-5 0.5958 - 0.0 PRINCIPAL:4 ENSMUSG00000095248 Or56a3b ENSMUST00000215517 ENSMUSP00000151022 TRANSLATION protein_coding - CCDS21641.1 5 315.0 0.0 1.0 11.8 242.4 5.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095248 Or56a3b ENSMUST00000216247 ENSMUSP00000150733 TRANSLATION protein_coding - CCDS21641.1 5 315.0 0.0 1.0 11.8 242.4 5.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095248 Or56a3b ENSMUST00000215564 ENSMUSP00000149338 TRANSLATION protein_coding - CCDS21641.1 5 315.0 0.0 1.0 11.8 242.4 5.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095248 Or56a3b ENSMUST00000215180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095248 Or56a3b ENSMUST00000098157 ENSMUSP00000095760 TRANSLATION protein_coding - CCDS21641.1 - 315.0 0.0 1.0 11.8 242.4 5.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051340 Or51a24 ENSMUST00000057104 ENSMUSP00000062821 TRANSLATION protein_coding - CCDS21607.1 - 315.0 0.0 1.0 12.5 375.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033917 Gde1 ENSMUST00000208040 ENSMUSP00000147251 TRANSLATION nonsense_mediated_decay - - 3 108.0 2.0 1.0 0.0 0.0 0.0 -2,-5 0.0 2 -2.0 MINOR ENSMUSG00000033917 Gde1 ENSMUST00000207323 ENSMUSP00000147236 TRANSLATION protein_coding stop - 3 107.0 2.0 1.0 0.0 0.0 0.0 -2,-5 0.0 2 -2.0 MINOR ENSMUSG00000033917 Gde1 ENSMUST00000038791 ENSMUSP00000046371 TRANSLATION protein_coding - CCDS21774.1 1 331.0 6.0 8.0 16.9 115.9 0.0 -2,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000033917 Gde1 ENSMUST00000132509 ENSMUSP00000122015 TRANSLATION protein_coding stop - 5 186.0 0.0 5.25 0.0 33.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000058886 Deaf1 ENSMUST00000211537 ENSMUSP00000147728 TRANSLATION protein_coding - - 2 575.0 7.0 2.85 0.0 117.2 0.0 -3,-5 0.0291 5 14.724 MINOR ENSMUSG00000058886 Deaf1 ENSMUST00000210816 ENSMUSP00000148125 TRANSLATION nonsense_mediated_decay start - 5 53.0 0.0 1.0 0.0 39.8 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000058886 Deaf1 ENSMUST00000211146 ENSMUSP00000147600 TRANSLATION nonsense_mediated_decay start - 3 81.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058886 Deaf1 ENSMUST00000209397 ENSMUSP00000147576 TRANSLATION nonsense_mediated_decay start - 3 116.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000058886 Deaf1 ENSMUST00000210830 ENSMUSP00000147631 TRANSLATION nonsense_mediated_decay - - 1 308.0 0.0 1.9 0.0 93.4 0.0 -3,-5 0.0019 3 -2.0 MINOR ENSMUSG00000058886 Deaf1 ENSMUST00000209608 ENSMUSP00000147786 TRANSLATION nonsense_mediated_decay - - 3 120.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000058886 Deaf1 ENSMUST00000209600 ENSMUSP00000147326 TRANSLATION protein_coding start - 2 132.0 2.0 0.8 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000058886 Deaf1 ENSMUST00000080553 ENSMUSP00000079395 TRANSLATION protein_coding - CCDS40185.1 1 566.0 8.0 3.7 6.4 131.0 0.0 -3,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000058886 Deaf1 ENSMUST00000210062 ENSMUSP00000148149 TRANSLATION nonsense_mediated_decay start - 1 283.0 0.0 1.9 0.0 93.4 0.0 -4,-5 0.0009 3 -2.0 MINOR ENSMUSG00000070462 Tlnrd1 ENSMUST00000094216 ENSMUSP00000091769 TRANSLATION protein_coding - CCDS21414.1 - 362.0 0.0 1.0 8.3 0.0 0.0 -4,-7 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000030868 Dctn5 ENSMUST00000123602 - NO_TRANSLATION retained_intron ENSMUSG00000030868 Dctn5 ENSMUST00000033156 ENSMUSP00000033156 TRANSLATION protein_coding - CCDS21811.1 1 182.0 0.0 5.33 30.2 24.5 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030868 Dctn5 ENSMUST00000176193 ENSMUSP00000134876 TRANSLATION nonsense_mediated_decay - - 2 54.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030868 Dctn5 ENSMUST00000176295 ENSMUSP00000135530 TRANSLATION nonsense_mediated_decay start - 3 43.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000099216 Obox8 ENSMUST00000184356 ENSMUSP00000138898 TRANSLATION protein_coding - - 5 217.0 0.0 1.2 0.0 62.1 0.0 -4,-5 0.7742 - 12.0 PRINCIPAL:1 ENSMUSG00000099216 Obox8 ENSMUST00000249328 ENSMUSP00000159697 TRANSLATION protein_coding - - - 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000025461 Scart1 ENSMUST00000209637 ENSMUSP00000147699 TRANSLATION protein_coding - CCDS40174.1 1 989.0 9.0 2.8 0.0 589.2 0.0 3,-2 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000025461 Scart1 ENSMUST00000209398 ENSMUSP00000147864 TRANSLATION protein_coding - - 1 991.0 9.0 2.8 0.0 589.2 0.0 3,-2 0.8588 - 14.0 ALTERNATIVE:2 ENSMUSG00000025461 Scart1 ENSMUST00000211540 - NO_TRANSLATION retained_intron ENSMUSG00000025461 Scart1 ENSMUST00000210159 - NO_TRANSLATION retained_intron ENSMUSG00000025461 Scart1 ENSMUST00000209840 - NO_TRANSLATION retained_intron ENSMUSG00000025461 Scart1 ENSMUST00000209376 - NO_TRANSLATION retained_intron ENSMUSG00000025461 Scart1 ENSMUST00000084460 ENSMUSP00000081497 TRANSLATION protein_coding - CCDS40174.1 5 989.0 9.0 2.8 0.0 589.2 0.0 3,-2 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000109058 Or2ag1 ENSMUST00000213721 ENSMUSP00000149585 TRANSLATION protein_coding - CCDS21676.1 5 316.0 0.0 1.0 9.9 155.7 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109058 Or2ag1 ENSMUST00000216009 ENSMUSP00000150853 TRANSLATION protein_coding - CCDS21676.1 5 316.0 0.0 1.0 9.9 155.7 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109058 Or2ag1 ENSMUST00000060879 ENSMUSP00000050694 TRANSLATION protein_coding - CCDS21676.1 - 316.0 0.0 1.0 9.9 155.7 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000055102 Zfp819 ENSMUST00000120935 ENSMUSP00000113867 TRANSLATION protein_coding - - 1 531.0 39.0 0.899 0.0 199.0 0.0 -4,-5 0.0623 - 10.062 MINOR ENSMUSG00000055102 Zfp819 ENSMUST00000116324 ENSMUSP00000112026 TRANSLATION protein_coding - CCDS21176.1 1 607.0 39.0 2.097 0.1 274.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000055102 Zfp819 ENSMUST00000127765 ENSMUSP00000116658 TRANSLATION protein_coding stop - 3 99.0 0.0 1.297 0.0 75.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055102 Zfp819 ENSMUST00000032661 ENSMUSP00000032661 TRANSLATION protein_coding - CCDS21176.1 1 607.0 39.0 2.097 0.1 274.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030427 Lilra6 ENSMUST00000090689 ENSMUSP00000088188 TRANSLATION protein_coding - - 1 625.0 0.0 6.85 0.0 87.2 0.0 2,-2 0.0095 - 8.154 MINOR ENSMUSG00000030427 Lilra6 ENSMUST00000206077 ENSMUSP00000145890 TRANSLATION protein_coding - - 1 323.0 0.0 4.1 0.0 56.9 0.0 -4,-5 0.0011 - 2.334 MINOR ENSMUSG00000030427 Lilra6 ENSMUST00000038176 ENSMUSP00000042636 TRANSLATION protein_coding - CCDS20728.1 1 663.0 0.0 7.85 0.1 118.0 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030427 Lilra6 ENSMUST00000131255 - NO_TRANSLATION retained_intron ENSMUSG00000030427 Lilra6 ENSMUST00000206851 - NO_TRANSLATION retained_intron ENSMUSG00000037974 Muc5ac ENSMUST00000041924 ENSMUSP00000039699 TRANSLATION protein_coding - CCDS40189.1 5 2751.0 0.0 21.69 0.0 985.0 0.0 3,-2 0.7566 37 6.0 MINOR ENSMUSG00000037974 Muc5ac ENSMUST00000155534 ENSMUSP00000122353 TRANSLATION protein_coding - - 5 3455.0 0.0 21.69 0.0 1137.3 0.0 3,-2 1.0 39 12.0 PRINCIPAL:1 ENSMUSG00000055643 Ubqln5 ENSMUST00000053743 ENSMUSP00000062054 TRANSLATION protein_coding - CCDS52341.1 - 510.0 0.0 0.2 1.2 74.7 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031068 Glrx3 ENSMUST00000211496 ENSMUSP00000147803 TRANSLATION protein_coding - - 1 374.0 21.0 7.8 0.0 192.2 0.0 -4,-6 0.0421 11 12.998 ALTERNATIVE:2 ENSMUSG00000031068 Glrx3 ENSMUST00000211598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031068 Glrx3 ENSMUST00000064404 ENSMUSP00000066621 TRANSLATION protein_coding - CCDS21948.1 1 337.0 21.0 8.3 0.1 192.2 0.0 -4,-6 0.9932 12 14.0 PRINCIPAL:2 ENSMUSG00000031068 Glrx3 ENSMUST00000209696 ENSMUSP00000148144 TRANSLATION protein_coding stop - 3 163.0 4.0 4.83 0.0 85.9 0.0 -4,-7 0.0007 5 -2.0 MINOR ENSMUSG00000031068 Glrx3 ENSMUST00000211769 ENSMUSP00000147891 TRANSLATION nonsense_mediated_decay - - 3 74.0 0.0 2.0 0.0 30.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000110195 Pde2a ENSMUST00000210100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110195 Pde2a ENSMUST00000210364 ENSMUSP00000148212 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000110195 Pde2a ENSMUST00000210092 ENSMUSP00000147884 TRANSLATION nonsense_mediated_decay - - 3 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000110195 Pde2a ENSMUST00000209315 - NO_TRANSLATION retained_intron ENSMUSG00000110195 Pde2a ENSMUST00000209695 - NO_TRANSLATION retained_intron ENSMUSG00000110195 Pde2a ENSMUST00000209537 ENSMUSP00000147553 TRANSLATION protein_coding - CCDS85351.1 1 945.0 19.0 19.0 0.0 345.8 0.0 -4,-6 0.2425 26 17.898 MINOR ENSMUSG00000110195 Pde2a ENSMUST00000210535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110195 Pde2a ENSMUST00000211368 ENSMUSP00000147847 TRANSLATION protein_coding - CCDS40043.1 5 935.0 19.0 19.0 6.0 345.8 0.0 -4,-2 1.0 26 19.898 PRINCIPAL:1 ENSMUSG00000110195 Pde2a ENSMUST00000210348 - NO_TRANSLATION retained_intron ENSMUSG00000110195 Pde2a ENSMUST00000163751 ENSMUSP00000131553 TRANSLATION protein_coding - CCDS52330.1 1 939.0 19.0 19.0 0.0 347.5 0.0 -4,-2 0.3521 26 18.0 MINOR ENSMUSG00000110195 Pde2a ENSMUST00000211051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109336 Samd4b ENSMUST00000207766 ENSMUSP00000146984 TRANSLATION nonsense_mediated_decay - - 5 230.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 3 -2.0 MINOR ENSMUSG00000109336 Samd4b ENSMUST00000208126 ENSMUSP00000146657 TRANSLATION protein_coding start - 3 132.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0006 2 -2.0 MINOR ENSMUSG00000109336 Samd4b ENSMUST00000208199 ENSMUSP00000147037 TRANSLATION protein_coding - CCDS21044.1 5 687.0 0.0 1.75 11.8 41.2 0.0 -4,-6 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000109336 Samd4b ENSMUST00000208676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019194 Scn1b ENSMUST00000211923 - NO_TRANSLATION retained_intron ENSMUSG00000019194 Scn1b ENSMUST00000211945 ENSMUSP00000148295 TRANSLATION protein_coding - CCDS21126.1 5 218.0 0.0 3.6 9.6 57.8 1.0 4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000019194 Scn1b ENSMUST00000098548 ENSMUSP00000096148 TRANSLATION protein_coding - CCDS21126.1 1 218.0 0.0 3.6 9.6 57.8 1.0 4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000044786 Zfp36 ENSMUST00000051241 ENSMUSP00000057815 TRANSLATION protein_coding - CCDS21041.1 1 319.0 8.0 0.4 2.7 80.9 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:2 ENSMUSG00000044786 Zfp36 ENSMUST00000209061 ENSMUSP00000146830 TRANSLATION protein_coding - - - 307.0 8.0 0.4 0.0 80.9 0.0 -4,-5 0.0676 3 14.0 ALTERNATIVE:2 ENSMUSG00000019737 Syne4 ENSMUST00000176536 - NO_TRANSLATION retained_intron ENSMUSG00000019737 Syne4 ENSMUST00000176571 ENSMUSP00000135558 TRANSLATION protein_coding start - 2 79.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000019737 Syne4 ENSMUST00000176504 ENSMUSP00000135844 TRANSLATION protein_coding stop - 3 255.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000019737 Syne4 ENSMUST00000176253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019737 Syne4 ENSMUST00000176965 - NO_TRANSLATION retained_intron ENSMUSG00000019737 Syne4 ENSMUST00000177257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019737 Syne4 ENSMUST00000176071 - NO_TRANSLATION retained_intron ENSMUSG00000019737 Syne4 ENSMUST00000177078 ENSMUSP00000135895 TRANSLATION protein_coding stop - 5 237.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000019737 Syne4 ENSMUST00000176006 - NO_TRANSLATION retained_intron ENSMUSG00000019737 Syne4 ENSMUST00000176789 ENSMUSP00000135474 TRANSLATION nonsense_mediated_decay start - 2 53.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019737 Syne4 ENSMUST00000175902 - NO_TRANSLATION retained_intron ENSMUSG00000019737 Syne4 ENSMUST00000176984 - NO_TRANSLATION retained_intron ENSMUSG00000019737 Syne4 ENSMUST00000175672 - NO_TRANSLATION retained_intron ENSMUSG00000019737 Syne4 ENSMUST00000054594 ENSMUSP00000055874 TRANSLATION protein_coding - CCDS21086.1 1 388.0 0.0 0.7 1.1 45.1 1.0 -4,-5 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000019737 Syne4 ENSMUST00000176304 ENSMUSP00000135637 TRANSLATION protein_coding - CCDS71929.1 5 305.0 0.0 0.7 0.1 45.1 1.0 -4,-5 0.3935 1 8.0 ALTERNATIVE:2 ENSMUSG00000019737 Syne4 ENSMUST00000177395 - NO_TRANSLATION retained_intron ENSMUSG00000019737 Syne4 ENSMUST00000176232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001741 Il16 ENSMUST00000151047 - NO_TRANSLATION retained_intron ENSMUSG00000001741 Il16 ENSMUST00000001792 ENSMUSP00000001792 TRANSLATION protein_coding - CCDS21412.1 1 1322.0 0.0 7.2 0.1 109.9 0.0 -4,-7 1.0 25 12.0 PRINCIPAL:1 ENSMUSG00000001741 Il16 ENSMUST00000145610 ENSMUSP00000146496 TRANSLATION protein_coding - - 1 624.0 0.0 4.0 2.0 45.9 0.0 -4,-5 0.2768 20 3.16 MINOR ENSMUSG00000001741 Il16 ENSMUST00000156553 ENSMUSP00000122813 TRANSLATION protein_coding stop - 2 29.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001741 Il16 ENSMUST00000131916 ENSMUSP00000122022 TRANSLATION protein_coding stop - 2 29.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001741 Il16 ENSMUST00000153560 ENSMUSP00000118516 TRANSLATION nonsense_mediated_decay - - 1 238.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.001 - -2.0 MINOR ENSMUSG00000025489 Ifitm5 ENSMUST00000026562 ENSMUSP00000026562 TRANSLATION protein_coding - CCDS21993.1 1 134.0 0.0 0.8 16.5 88.6 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000010760 Phlda2 ENSMUST00000207425 ENSMUSP00000146883 TRANSLATION protein_coding stop - 3 105.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0138 1 -2.0 MINOR ENSMUSG00000010760 Phlda2 ENSMUST00000207561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010760 Phlda2 ENSMUST00000010904 ENSMUSP00000010904 TRANSLATION protein_coding - CCDS22042.1 1 144.0 0.0 1.8 0.0 0.0 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000066241 Or10a48 ENSMUST00000084754 ENSMUSP00000081807 TRANSLATION protein_coding - CCDS21727.1 - 310.0 0.0 1.0 6.5 192.2 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025468 Caly ENSMUST00000026541 ENSMUSP00000026541 TRANSLATION protein_coding - CCDS21962.1 1 226.0 0.0 1.0 0.4 257.1 1.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000025468 Caly ENSMUST00000211681 - NO_TRANSLATION retained_intron ENSMUSG00000025468 Caly ENSMUST00000211044 ENSMUSP00000148159 TRANSLATION protein_coding - CCDS21962.1 5 226.0 0.0 1.0 0.4 257.1 1.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000025468 Caly ENSMUST00000211283 ENSMUSP00000148173 TRANSLATION protein_coding - CCDS21962.1 1 226.0 0.0 1.0 0.4 257.1 1.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000025468 Caly ENSMUST00000166758 ENSMUSP00000130779 TRANSLATION protein_coding - CCDS21962.1 1 226.0 0.0 1.0 0.4 257.1 1.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000078816 Prkcg ENSMUST00000203454 - NO_TRANSLATION retained_intron ENSMUSG00000078816 Prkcg ENSMUST00000203600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078816 Prkcg ENSMUST00000172109 ENSMUSP00000131351 TRANSLATION protein_coding - CCDS80649.1 1 646.0 28.0 12.4664 0.8 434.2 0.0 -4,-6 0.1105 23 12.6 MINOR ENSMUSG00000078816 Prkcg ENSMUST00000100301 ENSMUSP00000097874 TRANSLATION protein_coding - CCDS57470.1 1 697.0 33.0 12.9664 9.9 451.9 0.0 -4,-6 1.0 28 21.0 PRINCIPAL:1 ENSMUSG00000078816 Prkcg ENSMUST00000203081 ENSMUSP00000145498 TRANSLATION nonsense_mediated_decay start - 5 31.0 2.0 0.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006024 Napa ENSMUST00000127637 ENSMUSP00000147358 TRANSLATION nonsense_mediated_decay - - 3 68.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006024 Napa ENSMUST00000124563 - NO_TRANSLATION retained_intron ENSMUSG00000006024 Napa ENSMUST00000150208 - NO_TRANSLATION retained_intron ENSMUSG00000006024 Napa ENSMUST00000139507 - NO_TRANSLATION retained_intron ENSMUSG00000006024 Napa ENSMUST00000132828 - NO_TRANSLATION retained_intron ENSMUSG00000006024 Napa ENSMUST00000140640 - NO_TRANSLATION retained_intron ENSMUSG00000006024 Napa ENSMUST00000006181 ENSMUSP00000006181 TRANSLATION protein_coding - CCDS20843.1 1 295.0 0.0 8.5 34.2 368.1 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000066269 Or51a6 ENSMUST00000213477 ENSMUSP00000149993 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 11.4 372.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066269 Or51a6 ENSMUST00000216420 ENSMUSP00000150074 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 11.4 372.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066269 Or51a6 ENSMUST00000084812 ENSMUSP00000081873 TRANSLATION protein_coding - CCDS21555.1 - 318.0 0.0 1.0 0.0 372.5 5.0 -4,-7 0.3971 - 12.0 MINOR ENSMUSG00000030522 Mtmr10 ENSMUST00000206452 ENSMUSP00000146259 TRANSLATION nonsense_mediated_decay - - 5 190.0 0.0 1.1075 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000030522 Mtmr10 ENSMUST00000032736 ENSMUSP00000032736 TRANSLATION protein_coding - CCDS39976.1 1 771.0 0.0 3.7325 14.8 424.9 0.0 -4,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000030522 Mtmr10 ENSMUST00000206680 ENSMUSP00000145602 TRANSLATION nonsense_mediated_decay start - 3 73.0 0.0 0.0825 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000030522 Mtmr10 ENSMUST00000206732 - NO_TRANSLATION retained_intron ENSMUSG00000078753 Scgb1b24 ENSMUST00000108087 ENSMUSP00000103722 TRANSLATION protein_coding - CCDS52199.1 1 92.0 0.0 1.33 0.0 66.1 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030752 Kdm8 ENSMUST00000135129 ENSMUSP00000114890 TRANSLATION protein_coding stop - 3 152.0 7.0 3.5 0.0 63.6 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000030752 Kdm8 ENSMUST00000033010 ENSMUSP00000033010 TRANSLATION protein_coding - CCDS21821.1 1 414.0 13.0 5.75 4.2 156.2 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000038489 Polr2l ENSMUST00000043870 ENSMUSP00000043204 TRANSLATION protein_coding - CCDS52446.1 1 67.0 4.0 2.0 28.8 115.9 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000005609 Ctr9 ENSMUST00000146558 - NO_TRANSLATION retained_intron ENSMUSG00000005609 Ctr9 ENSMUST00000143818 - NO_TRANSLATION retained_intron ENSMUSG00000005609 Ctr9 ENSMUST00000146709 - NO_TRANSLATION retained_intron ENSMUSG00000005609 Ctr9 ENSMUST00000005749 ENSMUSP00000005749 TRANSLATION protein_coding - CCDS21750.1 1 1173.0 0.0 20.0 11.3 115.1 0.0 -4,-5 1.0 26 15.0 PRINCIPAL:1 ENSMUSG00000005609 Ctr9 ENSMUST00000209912 - NO_TRANSLATION retained_intron ENSMUSG00000005609 Ctr9 ENSMUST00000157025 - NO_TRANSLATION retained_intron ENSMUSG00000005609 Ctr9 ENSMUST00000140220 - NO_TRANSLATION retained_intron ENSMUSG00000005609 Ctr9 ENSMUST00000152019 - NO_TRANSLATION retained_intron ENSMUSG00000005609 Ctr9 ENSMUST00000123681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096916 Zfp850 ENSMUST00000180024 ENSMUSP00000137192 TRANSLATION protein_coding - CCDS57531.1 5 689.0 70.0 0.8 0.1 393.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000096916 Zfp850 ENSMUST00000180502 ENSMUSP00000141063 TRANSLATION protein_coding - CCDS57531.1 3 689.0 70.0 0.8 0.1 393.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000096916 Zfp850 ENSMUST00000099111 ENSMUSP00000096711 TRANSLATION protein_coding - - - 140.0 3.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - 3.0 MINOR ENSMUSG00000030822 Prr14 ENSMUST00000133938 ENSMUSP00000117195 TRANSLATION protein_coding stop - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000030822 Prr14 ENSMUST00000142532 - NO_TRANSLATION retained_intron ENSMUSG00000030822 Prr14 ENSMUST00000128805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030822 Prr14 ENSMUST00000133817 ENSMUSP00000146250 TRANSLATION protein_coding stop - 2 65.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030822 Prr14 ENSMUST00000206915 ENSMUSP00000145988 TRANSLATION protein_coding start - 1 185.0 0.0 0.0 0.0 44.6 0.0 -4,-5 0.0006 1 -2.0 MINOR ENSMUSG00000030822 Prr14 ENSMUST00000147202 - NO_TRANSLATION retained_intron ENSMUSG00000030822 Prr14 ENSMUST00000206118 - NO_TRANSLATION retained_intron ENSMUSG00000030822 Prr14 ENSMUST00000106292 ENSMUSP00000101899 TRANSLATION protein_coding - CCDS21868.1 5 612.0 0.0 0.0 0.3 80.5 0.0 -4,-7 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000030822 Prr14 ENSMUST00000132124 - NO_TRANSLATION retained_intron ENSMUSG00000030822 Prr14 ENSMUST00000033095 ENSMUSP00000033095 TRANSLATION protein_coding - CCDS21868.1 1 612.0 0.0 0.0 0.3 80.5 0.0 -4,-7 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000030822 Prr14 ENSMUST00000132819 ENSMUSP00000146235 TRANSLATION nonsense_mediated_decay start - 3 128.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000101232 Scgb1b15 ENSMUST00000189118 ENSMUSP00000139565 TRANSLATION protein_coding - - 5 93.0 0.0 1.63 0.0 75.3 0.0 3,-2 0.8196 - 12.0 PRINCIPAL:1 ENSMUSG00000040435 Ppp1r15a ENSMUST00000211212 ENSMUSP00000147703 TRANSLATION protein_coding start - 3 103.0 0.0 1.0 0.0 38.6 0.0 -4,-7 0.0028 - -2.0 MINOR ENSMUSG00000040435 Ppp1r15a ENSMUST00000167273 ENSMUSP00000128497 TRANSLATION protein_coding - CCDS21249.1 2 657.0 0.0 1.5 0.0 44.8 0.0 -2,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040435 Ppp1r15a ENSMUST00000042105 ENSMUSP00000049488 TRANSLATION protein_coding - CCDS21249.1 1 657.0 0.0 1.5 0.0 44.8 0.0 -2,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030890 Ilk ENSMUST00000136687 ENSMUSP00000123443 TRANSLATION protein_coding stop - 5 295.0 0.0 8.24 0.0 109.3 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000030890 Ilk ENSMUST00000127298 ENSMUSP00000116329 TRANSLATION nonsense_mediated_decay start - 3 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030890 Ilk ENSMUST00000163389 ENSMUSP00000130341 TRANSLATION protein_coding - CCDS21659.1 1 452.0 0.0 12.24 31.9 203.7 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000030890 Ilk ENSMUST00000152508 - NO_TRANSLATION retained_intron ENSMUSG00000030890 Ilk ENSMUST00000130565 ENSMUSP00000147693 TRANSLATION nonsense_mediated_decay start - 2 54.0 0.0 1.0 0.0 21.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030890 Ilk ENSMUST00000154626 - NO_TRANSLATION retained_intron ENSMUSG00000030890 Ilk ENSMUST00000145123 - NO_TRANSLATION retained_intron ENSMUSG00000030890 Ilk ENSMUST00000148971 - NO_TRANSLATION retained_intron ENSMUSG00000030890 Ilk ENSMUST00000153557 ENSMUSP00000147366 TRANSLATION nonsense_mediated_decay start - 5 95.0 0.0 2.25 0.0 24.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030890 Ilk ENSMUST00000033182 ENSMUSP00000033182 TRANSLATION protein_coding - CCDS21659.1 1 452.0 0.0 12.24 31.9 203.7 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000030890 Ilk ENSMUST00000149695 ENSMUSP00000147503 TRANSLATION nonsense_mediated_decay - - 1 233.0 0.0 4.41 0.0 41.3 0.0 -4,-5 0.0001 4 -2.0 MINOR ENSMUSG00000030890 Ilk ENSMUST00000151108 - NO_TRANSLATION retained_intron ENSMUSG00000002985 Apoe ENSMUST00000167646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002985 Apoe ENSMUST00000174144 ENSMUSP00000134622 TRANSLATION protein_coding stop - 2 231.0 0.0 3.264 0.0 157.5 0.0 4,-1 0.0003 6 -2.0 MINOR ENSMUSG00000002985 Apoe ENSMUST00000207525 - NO_TRANSLATION retained_intron ENSMUSG00000002985 Apoe ENSMUST00000174064 ENSMUSP00000133302 TRANSLATION protein_coding - CCDS20912.1 1 311.0 0.0 4.264 3.6 192.5 0.0 4,-1 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000002985 Apoe ENSMUST00000174710 ENSMUSP00000134429 TRANSLATION protein_coding - - 1 71.0 0.0 1.264 0.0 0.0 0.0 4,-1 0.0008 - 0.0 MINOR ENSMUSG00000002985 Apoe ENSMUST00000003066 ENSMUSP00000003066 TRANSLATION protein_coding - CCDS20912.1 5 311.0 0.0 4.264 3.6 192.5 0.0 4,-1 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000002985 Apoe ENSMUST00000174355 ENSMUSP00000134160 TRANSLATION protein_coding - CCDS20912.1 5 311.0 0.0 4.264 3.6 192.5 0.0 4,-1 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000002985 Apoe ENSMUST00000172983 ENSMUSP00000133359 TRANSLATION protein_coding stop - 5 232.0 0.0 3.264 0.0 157.5 0.0 4,-1 0.0007 6 -2.0 MINOR ENSMUSG00000002985 Apoe ENSMUST00000172808 ENSMUSP00000134558 TRANSLATION protein_coding stop - 3 146.0 0.0 2.0 0.0 98.3 0.0 2,-2 0.0 3 -2.0 MINOR ENSMUSG00000002985 Apoe ENSMUST00000174191 ENSMUSP00000133447 TRANSLATION protein_coding - - 2 71.0 0.0 1.264 0.0 0.0 0.0 4,-1 0.0008 - 0.0 MINOR ENSMUSG00000002985 Apoe ENSMUST00000173739 ENSMUSP00000133371 TRANSLATION protein_coding - CCDS20912.1 1 311.0 0.0 4.264 3.6 192.5 0.0 4,-1 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000044899 Or52h2 ENSMUST00000060440 ENSMUSP00000050903 TRANSLATION protein_coding - CCDS21614.1 - 312.0 0.0 1.0 10.8 369.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044899 Or52h2 ENSMUST00000106859 ENSMUSP00000102472 TRANSLATION protein_coding - CCDS21614.1 3 312.0 0.0 1.0 10.8 369.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025505 Tmem80 ENSMUST00000145184 ENSMUSP00000117633 TRANSLATION protein_coding - - 5 92.0 0.0 1.75 0.0 42.9 5.0 -2,-5 0.0053 - 6.468 MINOR ENSMUSG00000025505 Tmem80 ENSMUST00000126510 ENSMUSP00000123330 TRANSLATION protein_coding - CCDS22008.1 5 123.0 0.0 2.75 2.7 97.1 6.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000025505 Tmem80 ENSMUST00000128649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025505 Tmem80 ENSMUST00000026578 ENSMUSP00000026578 TRANSLATION protein_coding - CCDS22008.1 1 123.0 0.0 2.75 2.7 97.1 6.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000025505 Tmem80 ENSMUST00000128906 ENSMUSP00000117306 TRANSLATION protein_coding - - 2 92.0 0.0 1.75 0.0 42.9 5.0 -2,-5 0.0053 - 6.468 MINOR ENSMUSG00000025505 Tmem80 ENSMUST00000155657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025505 Tmem80 ENSMUST00000134221 - NO_TRANSLATION retained_intron ENSMUSG00000025505 Tmem80 ENSMUST00000132061 ENSMUSP00000118223 TRANSLATION protein_coding - CCDS22008.1 3 123.0 0.0 2.75 2.7 97.1 6.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000025505 Tmem80 ENSMUST00000133012 ENSMUSP00000116695 TRANSLATION protein_coding - CCDS22008.1 1 123.0 0.0 2.75 2.7 97.1 6.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030536 Iqgap1 ENSMUST00000205383 - NO_TRANSLATION retained_intron ENSMUSG00000030536 Iqgap1 ENSMUST00000205606 ENSMUSP00000145991 TRANSLATION nonsense_mediated_decay start - 5 37.0 0.0 0.816 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030536 Iqgap1 ENSMUST00000205813 ENSMUSP00000145556 TRANSLATION protein_coding start/stop - 3 186.0 0.0 4.33 0.0 72.8 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000030536 Iqgap1 ENSMUST00000205540 - NO_TRANSLATION retained_intron ENSMUSG00000030536 Iqgap1 ENSMUST00000205304 ENSMUSP00000146126 TRANSLATION protein_coding stop - 3 101.0 0.0 2.0 0.0 25.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030536 Iqgap1 ENSMUST00000167377 ENSMUSP00000128278 TRANSLATION protein_coding - CCDS40001.1 1 1657.0 0.0 16.18 34.6 482.4 0.0 -4,-5 1.0 61 16.0 PRINCIPAL:1 ENSMUSG00000030536 Iqgap1 ENSMUST00000205824 - NO_TRANSLATION retained_intron ENSMUSG00000030536 Iqgap1 ENSMUST00000206149 - NO_TRANSLATION retained_intron ENSMUSG00000050870 Mrgprb8 ENSMUST00000056676 ENSMUSP00000052230 TRANSLATION protein_coding - CCDS21302.1 - 330.0 0.0 0.8 0.0 23.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036578 Fxyd7 ENSMUST00000073892 ENSMUSP00000073555 TRANSLATION protein_coding - CCDS21122.1 1 80.0 0.0 1.344 5.3 73.3 1.0 -4,-6 0.8567 2 10.0 ALTERNATIVE:1 ENSMUSG00000036578 Fxyd7 ENSMUST00000206341 ENSMUSP00000146171 TRANSLATION protein_coding - - 1 77.0 0.0 1.344 5.3 73.5 1.0 -4,-6 0.922 2 10.0 PRINCIPAL:4 ENSMUSG00000038704 Aspdh ENSMUST00000152902 ENSMUSP00000114410 TRANSLATION nonsense_mediated_decay - - 3 44.0 2.0 0.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038704 Aspdh ENSMUST00000035929 ENSMUSP00000039202 TRANSLATION protein_coding - CCDS21207.1 1 287.0 18.0 6.33 0.4 160.6 0.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000038704 Aspdh ENSMUST00000135624 ENSMUSP00000146347 TRANSLATION protein_coding stop - 3 144.0 9.0 2.25 0.0 51.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038704 Aspdh ENSMUST00000207591 - NO_TRANSLATION TEC ENSMUSG00000038704 Aspdh ENSMUST00000156957 ENSMUSP00000121766 TRANSLATION protein_coding start - 5 169.0 6.0 3.58 0.0 82.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000038704 Aspdh ENSMUST00000133801 - NO_TRANSLATION retained_intron ENSMUSG00000038704 Aspdh ENSMUST00000146128 ENSMUSP00000119474 TRANSLATION protein_coding stop - 5 255.0 13.0 5.0 0.0 150.5 0.0 -4,-7 0.0054 8 -2.0 MINOR ENSMUSG00000117863 Vmn1r61 ENSMUST00000238042 ENSMUSP00000157894 TRANSLATION nonsense_mediated_decay - CCDS51986.1 - 300.0 0.0 0.0 0.0 63.2 5.0 3,-2 1.0 - -2.0 MINOR ENSMUSG00000117863 Vmn1r61 ENSMUST00000164880 ENSMUSP00000128012 TRANSLATION protein_coding - CCDS51986.1 - 300.0 0.0 0.0 0.0 63.2 5.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000117863 Vmn1r61 ENSMUST00000238026 - NO_TRANSLATION retained_intron ENSMUSG00000117863 Vmn1r61 ENSMUST00000236051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066232 Ipo7 ENSMUST00000084731 ENSMUSP00000081782 TRANSLATION protein_coding - CCDS40085.1 1 1038.0 0.0 14.617 26.7 108.8 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000066232 Ipo7 ENSMUST00000208951 ENSMUSP00000146367 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 0.3 0.0 27.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066232 Ipo7 ENSMUST00000207277 - NO_TRANSLATION retained_intron ENSMUSG00000066232 Ipo7 ENSMUST00000208821 - NO_TRANSLATION retained_intron ENSMUSG00000066232 Ipo7 ENSMUST00000208408 - NO_TRANSLATION retained_intron ENSMUSG00000030507 Dbx1 ENSMUST00000032717 ENSMUSP00000032717 TRANSLATION protein_coding - CCDS21306.1 1 335.0 0.0 1.2 2.8 72.2 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030986 Dhx32 ENSMUST00000146211 - NO_TRANSLATION retained_intron ENSMUSG00000030986 Dhx32 ENSMUST00000136301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030986 Dhx32 ENSMUST00000149876 ENSMUSP00000121789 TRANSLATION protein_coding stop - 2 136.0 13.0 1.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030986 Dhx32 ENSMUST00000063669 ENSMUSP00000066067 TRANSLATION protein_coding - - 1 744.0 14.0 8.31 7.8 120.4 0.0 -4,-5 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000030986 Dhx32 ENSMUST00000033290 ENSMUSP00000033290 TRANSLATION protein_coding - - 1 744.0 14.0 8.31 7.8 120.4 0.0 -4,-5 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000030986 Dhx32 ENSMUST00000135989 ENSMUSP00000118326 TRANSLATION protein_coding stop - 3 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0356 - -2.0 MINOR ENSMUSG00000030986 Dhx32 ENSMUST00000140593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030986 Dhx32 ENSMUST00000106139 ENSMUSP00000101745 TRANSLATION protein_coding - CCDS72060.1 1 611.0 0.0 6.73 1.0 120.4 0.0 -4,-5 0.2004 16 8.838 MINOR ENSMUSG00000030986 Dhx32 ENSMUST00000130182 ENSMUSP00000115677 TRANSLATION protein_coding stop - 3 103.0 13.0 0.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030986 Dhx32 ENSMUST00000211450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025515 Muc2 ENSMUST00000185406 ENSMUSP00000141040 TRANSLATION protein_coding - - 5 4576.0 0.0 24.688 0.0 840.4 0.0 3,-4 1.0 67 12.0 PRINCIPAL:1 ENSMUSG00000025480 Syce1 ENSMUST00000026553 ENSMUSP00000026553 TRANSLATION protein_coding - CCDS52436.1 1 329.0 0.0 4.1 0.4 210.6 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000025480 Syce1 ENSMUST00000211616 ENSMUSP00000148137 TRANSLATION protein_coding stop - 5 86.0 0.0 1.75 0.0 90.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030400 Ercc2 ENSMUST00000129249 ENSMUSP00000117840 TRANSLATION protein_coding start - 5 684.0 13.0 18.25 0.0 395.5 0.0 -4,-5 0.0035 10 -2.0 MINOR ENSMUSG00000030400 Ercc2 ENSMUST00000136055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030400 Ercc2 ENSMUST00000145039 - NO_TRANSLATION retained_intron ENSMUSG00000030400 Ercc2 ENSMUST00000135693 - NO_TRANSLATION retained_intron ENSMUSG00000030400 Ercc2 ENSMUST00000127363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030400 Ercc2 ENSMUST00000062831 ENSMUSP00000054380 TRANSLATION protein_coding - CCDS20900.1 1 760.0 13.0 20.25 26.8 461.6 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000030400 Ercc2 ENSMUST00000108460 ENSMUSP00000104100 TRANSLATION protein_coding - - 1 739.0 13.0 19.5 0.0 441.7 0.0 -4,-6 0.037 13 15.306 MINOR ENSMUSG00000030400 Ercc2 ENSMUST00000128167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030400 Ercc2 ENSMUST00000108461 ENSMUSP00000104101 TRANSLATION protein_coding - - 1 508.0 1.0 13.25 0.0 299.5 0.0 -4,-5 0.0002 8 0.0 MINOR ENSMUSG00000030400 Ercc2 ENSMUST00000129291 - NO_TRANSLATION retained_intron ENSMUSG00000045948 Mrps12 ENSMUST00000171183 ENSMUSP00000132443 TRANSLATION protein_coding - CCDS21052.1 2 139.0 0.0 1.33 10.4 90.8 0.0 -1,0 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000045948 Mrps12 ENSMUST00000056078 ENSMUSP00000062066 TRANSLATION protein_coding - CCDS21052.1 1 139.0 0.0 1.33 10.4 90.8 0.0 -1,0 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000045948 Mrps12 ENSMUST00000165246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045948 Mrps12 ENSMUST00000165004 ENSMUSP00000129492 TRANSLATION protein_coding stop - 3 125.0 0.0 1.0 0.0 89.8 0.0 -4,-2 0.0148 2 -2.0 MINOR ENSMUSG00000110171 Or5p60 ENSMUST00000210881 ENSMUSP00000147263 TRANSLATION protein_coding - CCDS21706.1 - 321.0 0.0 1.0 0.8 177.0 4.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000110171 Or5p60 ENSMUST00000214722 ENSMUSP00000150774 TRANSLATION protein_coding - CCDS21706.1 5 321.0 0.0 1.0 0.8 177.0 4.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066584 Scgb2b27 ENSMUST00000141890 - NO_TRANSLATION retained_intron ENSMUSG00000066584 Scgb2b27 ENSMUST00000085620 ENSMUSP00000082760 TRANSLATION protein_coding - CCDS52200.1 1 112.0 0.0 2.3 0.0 101.4 0.0 1,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000066584 Scgb2b27 ENSMUST00000185399 ENSMUSP00000140711 TRANSLATION protein_coding - CCDS80703.1 2 82.0 0.0 1.3 0.0 87.0 0.0 1,-2 0.0742 2 8.526 MINOR ENSMUSG00000039405 Prss23 ENSMUST00000207636 ENSMUSP00000146384 TRANSLATION protein_coding stop - 3 140.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0014 2 -2.0 MINOR ENSMUSG00000039405 Prss23 ENSMUST00000208402 ENSMUSP00000147219 TRANSLATION protein_coding stop - 2 167.0 0.0 0.225 0.0 0.0 0.0 4,-1 0.0424 4 -2.0 MINOR ENSMUSG00000039405 Prss23 ENSMUST00000207932 ENSMUSP00000147183 TRANSLATION protein_coding - CCDS21442.1 1 382.0 2.0 0.225 8.3 41.0 0.0 4,-1 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000039405 Prss23 ENSMUST00000208903 ENSMUSP00000146825 TRANSLATION protein_coding stop - 3 78.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0014 1 -2.0 MINOR ENSMUSG00000039405 Prss23 ENSMUST00000209118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039405 Prss23 ENSMUST00000041761 ENSMUSP00000045191 TRANSLATION protein_coding - CCDS21442.1 1 382.0 2.0 0.225 8.3 41.0 0.0 4,-1 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000039405 Prss23 ENSMUST00000207538 ENSMUSP00000146863 TRANSLATION protein_coding stop - 3 86.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0014 1 -2.0 MINOR ENSMUSG00000039405 Prss23 ENSMUST00000208888 ENSMUSP00000146389 TRANSLATION protein_coding stop - 2 138.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0014 2 -2.0 MINOR ENSMUSG00000030374 Strn4 ENSMUST00000138070 - NO_TRANSLATION retained_intron ENSMUSG00000030374 Strn4 ENSMUST00000123247 - NO_TRANSLATION retained_intron ENSMUSG00000030374 Strn4 ENSMUST00000108495 ENSMUSP00000104135 TRANSLATION protein_coding - CCDS39787.1 1 753.0 0.0 8.525 5.3 262.4 0.0 -3,-6 0.9219 15 10.0 ALTERNATIVE:1 ENSMUSG00000030374 Strn4 ENSMUST00000127835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030374 Strn4 ENSMUST00000184280 ENSMUSP00000139307 TRANSLATION nonsense_mediated_decay start - 5 225.0 0.0 2.325 0.0 130.4 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000030374 Strn4 ENSMUST00000184708 ENSMUSP00000139171 TRANSLATION nonsense_mediated_decay start - 5 293.0 0.0 0.85 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030374 Strn4 ENSMUST00000184694 ENSMUSP00000139113 TRANSLATION protein_coding start - 2 198.0 0.0 3.35 0.0 67.5 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000030374 Strn4 ENSMUST00000134350 - NO_TRANSLATION retained_intron ENSMUSG00000030374 Strn4 ENSMUST00000183680 - NO_TRANSLATION retained_intron ENSMUSG00000030374 Strn4 ENSMUST00000019220 ENSMUSP00000019220 TRANSLATION protein_coding - CCDS39786.1 1 760.0 0.0 8.525 5.3 262.4 0.0 -3,-6 1.0 15 10.0 PRINCIPAL:4 ENSMUSG00000030374 Strn4 ENSMUST00000185011 ENSMUSP00000139290 TRANSLATION nonsense_mediated_decay start - 5 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030374 Strn4 ENSMUST00000123510 - NO_TRANSLATION retained_intron ENSMUSG00000030374 Strn4 ENSMUST00000137885 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030374 Strn4 ENSMUST00000131721 - NO_TRANSLATION retained_intron ENSMUSG00000070424 Art5 ENSMUST00000106937 ENSMUSP00000102550 TRANSLATION protein_coding - CCDS21525.1 1 309.0 16.0 3.33 5.8 312.4 0.0 2,-1 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000070424 Art5 ENSMUST00000211553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070424 Art5 ENSMUST00000106934 ENSMUSP00000102547 TRANSLATION protein_coding - - 5 211.0 4.0 2.33 0.0 102.1 0.0 2,-1 0.0009 1 4.002 MINOR ENSMUSG00000070424 Art5 ENSMUST00000094128 ENSMUSP00000091678 TRANSLATION protein_coding - CCDS21525.1 2 309.0 16.0 3.33 5.8 312.4 0.0 2,-1 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000070424 Art5 ENSMUST00000106935 ENSMUSP00000102548 TRANSLATION protein_coding - - 1 164.0 3.0 1.33 0.0 115.4 0.0 2,-1 0.0009 1 1.998 MINOR ENSMUSG00000095232 Scgb1b19 ENSMUST00000165813 ENSMUSP00000132661 TRANSLATION protein_coding - CCDS59730.1 5 93.0 0.0 1.48 0.9 71.2 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037706 Cd81 ENSMUST00000207448 ENSMUSP00000146533 TRANSLATION protein_coding stop - 3 68.0 0.0 2.25 0.0 73.8 2.0 -2,-4 0.0022 - -2.0 MINOR ENSMUSG00000037706 Cd81 ENSMUST00000141954 ENSMUSP00000147255 TRANSLATION protein_coding stop - 3 121.0 0.0 3.75 0.0 89.4 2.0 -2,-4 0.0007 4 -2.0 MINOR ENSMUSG00000037706 Cd81 ENSMUST00000208278 - NO_TRANSLATION retained_intron ENSMUSG00000037706 Cd81 ENSMUST00000037941 ENSMUSP00000043768 TRANSLATION protein_coding - CCDS22038.1 1 236.0 0.0 7.66 20.6 166.7 5.0 -2,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000037706 Cd81 ENSMUST00000128762 - NO_TRANSLATION retained_intron ENSMUSG00000037706 Cd81 ENSMUST00000132303 - NO_TRANSLATION retained_intron ENSMUSG00000038239 Hrc ENSMUST00000085351 ENSMUSP00000082459 TRANSLATION protein_coding - CCDS39950.1 1 738.0 0.0 3.01 0.0 34.3 0.0 4,-1 1.0 28 12.0 PRINCIPAL:1 ENSMUSG00000038239 Hrc ENSMUST00000211327 ENSMUSP00000147299 TRANSLATION protein_coding - - 5 78.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.002 - 0.0 MINOR ENSMUSG00000030612 Mrpl46 ENSMUST00000032841 ENSMUSP00000032841 TRANSLATION protein_coding - CCDS21373.1 1 283.0 0.0 3.0 0.0 65.8 0.0 -4,0 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000030612 Mrpl46 ENSMUST00000133949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000114515 Aldoa ENSMUST00000153686 ENSMUSP00000147238 TRANSLATION nonsense_mediated_decay - - 3 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0152 - -2.0 MINOR ENSMUSG00000114515 Aldoa ENSMUST00000207534 ENSMUSP00000147053 TRANSLATION protein_coding - - 5 138.0 0.0 0.0 6.6 0.0 0.0 -4,-7 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000043017 Ptgir ENSMUST00000144408 ENSMUSP00000122080 TRANSLATION protein_coding - CCDS20857.2 1 415.0 0.0 1.64 0.1 75.5 7.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000043017 Ptgir ENSMUST00000086101 ENSMUSP00000083270 TRANSLATION protein_coding - - 1 212.0 0.0 0.64 0.0 0.0 2.0 -4,-6 0.0026 1 2.34 MINOR ENSMUSG00000073945 Or52z13 ENSMUST00000098197 ENSMUSP00000095799 TRANSLATION protein_coding - CCDS21580.1 - 318.0 0.0 1.0 6.8 363.1 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073945 Or52z13 ENSMUST00000214883 ENSMUSP00000151147 TRANSLATION protein_coding - CCDS21580.1 5 318.0 0.0 1.0 6.8 363.1 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095339 Zscan4b ENSMUST00000168158 ENSMUSP00000127301 TRANSLATION protein_coding - CCDS52011.1 5 505.0 15.0 0.32 0.0 110.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095339 Zscan4b ENSMUST00000210847 ENSMUSP00000148157 TRANSLATION protein_coding - CCDS52011.1 5 505.0 15.0 0.32 0.0 110.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000090744 Gm6871 ENSMUST00000073410 ENSMUSP00000073117 TRANSLATION protein_coding - - 5 438.0 44.0 2.15 0.0 299.2 0.0 -4,-5 0.0922 - 13.4 ALTERNATIVE:2 ENSMUSG00000090744 Gm6871 ENSMUST00000110214 ENSMUSP00000105843 TRANSLATION protein_coding - - 5 545.0 44.0 2.15 0.0 303.8 0.0 -4,0 0.8311 - 14.0 PRINCIPAL:2 ENSMUSG00000090744 Gm6871 ENSMUST00000171059 ENSMUSP00000129201 TRANSLATION protein_coding - - 5 153.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0008 - 0.0 MINOR ENSMUSG00000090744 Gm6871 ENSMUST00000164677 ENSMUSP00000131240 TRANSLATION protein_coding stop - 3 150.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030877 Mfsd13b ENSMUST00000216241 ENSMUSP00000150654 TRANSLATION protein_coding - - 5 455.0 0.0 0.0 4.2 52.4 19.0 -4,-6 0.8407 - 2.0 ALTERNATIVE:2 ENSMUSG00000030877 Mfsd13b ENSMUST00000133939 ENSMUSP00000121409 TRANSLATION protein_coding start - 3 165.0 0.0 0.0 0.0 0.0 7.0 -4,-6 0.0044 - -2.0 MINOR ENSMUSG00000030877 Mfsd13b ENSMUST00000033166 ENSMUSP00000033166 TRANSLATION protein_coding - CCDS52384.1 1 454.0 0.0 0.0 4.2 52.4 19.0 -4,-6 1.0 - 2.0 PRINCIPAL:4 ENSMUSG00000030877 Mfsd13b ENSMUST00000138177 ENSMUSP00000115200 TRANSLATION protein_coding stop - 3 30.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000030877 Mfsd13b ENSMUST00000149535 ENSMUSP00000115341 TRANSLATION protein_coding stop - 3 143.0 0.0 0.0 0.0 0.0 8.0 -4,-6 0.0027 - -2.0 MINOR ENSMUSG00000030592 Ryr1 ENSMUST00000207783 - NO_TRANSLATION retained_intron ENSMUSG00000030592 Ryr1 ENSMUST00000179893 ENSMUSP00000137123 TRANSLATION protein_coding - CCDS39866.1 5 5035.0 0.0 38.245 0.4 1878.4 0.0 -4,-5 0.8224 120 10.842 MINOR ENSMUSG00000030592 Ryr1 ENSMUST00000214374 ENSMUSP00000149042 TRANSLATION protein_coding - - 5 5061.0 0.0 38.509 0.0 1888.9 0.0 -4,-5 1.0 118 12.0 PRINCIPAL:1 ENSMUSG00000030592 Ryr1 ENSMUST00000208318 - NO_TRANSLATION retained_intron ENSMUSG00000030592 Ryr1 ENSMUST00000208010 - NO_TRANSLATION retained_intron ENSMUSG00000030592 Ryr1 ENSMUST00000208922 - NO_TRANSLATION retained_intron ENSMUSG00000030592 Ryr1 ENSMUST00000207764 - NO_TRANSLATION retained_intron ENSMUSG00000003363 Pld3 ENSMUST00000155287 - NO_TRANSLATION retained_intron ENSMUSG00000003363 Pld3 ENSMUST00000117095 ENSMUSP00000113820 TRANSLATION protein_coding - CCDS21025.1 1 488.0 0.0 7.61 9.8 97.7 1.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000003363 Pld3 ENSMUST00000131106 ENSMUSP00000119228 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003363 Pld3 ENSMUST00000142981 - NO_TRANSLATION retained_intron ENSMUSG00000003363 Pld3 ENSMUST00000143903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003363 Pld3 ENSMUST00000150964 ENSMUSP00000122897 TRANSLATION protein_coding stop - 3 63.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000003363 Pld3 ENSMUST00000117611 ENSMUSP00000112942 TRANSLATION protein_coding - CCDS21025.1 1 488.0 0.0 7.61 9.8 97.7 1.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000003363 Pld3 ENSMUST00000127240 ENSMUSP00000115891 TRANSLATION protein_coding stop - 5 103.0 0.0 0.93 0.0 0.0 1.0 -4,-7 0.0007 - -2.0 MINOR ENSMUSG00000094905 Vmn1r155 ENSMUST00000177632 ENSMUSP00000136848 TRANSLATION protein_coding - CCDS52117.1 - 307.0 0.0 0.0 0.4 55.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000005553 Atp4a ENSMUST00000005692 ENSMUSP00000005692 TRANSLATION protein_coding - CCDS71932.1 5 1034.0 7.0 20.91 12.6 492.2 6.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000005553 Atp4a ENSMUST00000167761 - NO_TRANSLATION retained_intron ENSMUSG00000005553 Atp4a ENSMUST00000165410 - NO_TRANSLATION retained_intron ENSMUSG00000005553 Atp4a ENSMUST00000170371 ENSMUSP00000131964 TRANSLATION protein_coding - CCDS52182.1 1 1025.0 7.0 20.58 4.8 492.2 6.0 -4,-5 0.5943 14 18.324 MINOR ENSMUSG00000005553 Atp4a ENSMUST00000171014 ENSMUSP00000127209 TRANSLATION nonsense_mediated_decay start - 3 32.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025467 Prap1 ENSMUST00000026540 ENSMUSP00000026540 TRANSLATION protein_coding - CCDS21963.1 1 149.0 0.0 0.0 2.2 46.1 0.0 3,-2 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000002265 Peg3 ENSMUST00000150182 ENSMUSP00000116161 TRANSLATION nonsense_mediated_decay - - 1 116.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002265 Peg3 ENSMUST00000239104 ENSMUSP00000159154 TRANSLATION protein_coding - - - 1632.0 40.0 0.0 0.0 130.2 0.0 -4,-7 0.3513 8 8.0 ALTERNATIVE:2 ENSMUSG00000002265 Peg3 ENSMUST00000155910 - NO_TRANSLATION retained_intron ENSMUSG00000002265 Peg3 ENSMUST00000143703 ENSMUSP00000122423 TRANSLATION nonsense_mediated_decay - - 5 116.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002265 Peg3 ENSMUST00000051209 ENSMUSP00000050750 TRANSLATION protein_coding - CCDS20783.1 1 1571.0 40.0 0.0 0.0 130.2 0.0 -4,-5 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000048200 Cracr2b ENSMUST00000170879 ENSMUSP00000129946 TRANSLATION protein_coding - - 5 288.0 6.0 4.73 0.0 33.1 0.0 -4,-5 0.0119 3 13.842 MINOR ENSMUSG00000048200 Cracr2b ENSMUST00000167572 - NO_TRANSLATION retained_intron ENSMUSG00000048200 Cracr2b ENSMUST00000165194 ENSMUSP00000131175 TRANSLATION protein_coding stop - 3 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000048200 Cracr2b ENSMUST00000172215 ENSMUSP00000132793 TRANSLATION protein_coding stop - 3 157.0 6.0 1.73 0.0 33.1 0.0 -4,-5 0.0093 2 -2.0 MINOR ENSMUSG00000048200 Cracr2b ENSMUST00000163833 - NO_TRANSLATION retained_intron ENSMUSG00000048200 Cracr2b ENSMUST00000167491 ENSMUSP00000127957 TRANSLATION protein_coding stop - 3 225.0 6.0 3.73 0.0 33.1 0.0 -4,-5 0.0087 3 -2.0 MINOR ENSMUSG00000048200 Cracr2b ENSMUST00000053670 ENSMUSP00000055899 TRANSLATION protein_coding - CCDS22016.1 1 394.0 6.0 6.81 0.1 33.1 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000048200 Cracr2b ENSMUST00000171994 - NO_TRANSLATION retained_intron ENSMUSG00000048200 Cracr2b ENSMUST00000116247 ENSMUSP00000132824 TRANSLATION protein_coding start - 3 30.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070564 Ntn5 ENSMUST00000182750 ENSMUSP00000138412 TRANSLATION protein_coding - CCDS71964.1 1 383.0 0.0 3.1 0.0 177.1 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000070564 Ntn5 ENSMUST00000107742 ENSMUSP00000103371 TRANSLATION protein_coding - CCDS39957.1 1 452.0 0.0 2.14 0.0 139.5 0.0 0,-3 0.0432 - 7.824 MINOR ENSMUSG00000070564 Ntn5 ENSMUST00000183120 ENSMUSP00000138144 TRANSLATION protein_coding - CCDS80723.1 1 393.0 0.0 2.14 0.0 57.8 0.0 0,-3 0.1362 - 4.08 MINOR ENSMUSG00000061489 Or13a19 ENSMUST00000215542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061489 Or13a19 ENSMUST00000078103 ENSMUSP00000077243 TRANSLATION protein_coding - CCDS21971.1 - 309.0 0.0 1.0 5.4 180.8 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061489 Or13a19 ENSMUST00000214594 ENSMUSP00000149361 TRANSLATION protein_coding - CCDS21971.1 5 309.0 0.0 1.0 5.4 180.8 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000039062 Anpep ENSMUST00000206682 - NO_TRANSLATION retained_intron ENSMUSG00000039062 Anpep ENSMUST00000205502 ENSMUSP00000145682 TRANSLATION protein_coding stop - 3 207.0 0.0 4.75 0.0 173.5 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000039062 Anpep ENSMUST00000149164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039062 Anpep ENSMUST00000206235 ENSMUSP00000146085 TRANSLATION protein_coding stop - 3 65.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000039062 Anpep ENSMUST00000107392 ENSMUSP00000103015 TRANSLATION protein_coding - CCDS21388.1 1 966.0 22.0 18.48 8.4 584.5 0.0 -2,-5 1.0 42 21.0 PRINCIPAL:1 ENSMUSG00000039062 Anpep ENSMUST00000049004 ENSMUSP00000035943 TRANSLATION protein_coding - CCDS21388.1 1 966.0 22.0 18.48 8.4 584.5 0.0 -2,-5 1.0 42 21.0 PRINCIPAL:1 ENSMUSG00000061549 Or14c44 ENSMUST00000174362 ENSMUSP00000133780 TRANSLATION protein_coding - CCDS57560.1 3 311.0 0.0 1.0 5.0 154.6 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000056383 AI987944 ENSMUST00000205338 ENSMUSP00000145621 TRANSLATION protein_coding - CCDS85272.1 1 403.0 42.0 3.4 0.4 282.4 0.0 -4,-5 0.4591 - 14.0 ALTERNATIVE:2 ENSMUSG00000056383 AI987944 ENSMUST00000206430 - NO_TRANSLATION retained_intron ENSMUSG00000056383 AI987944 ENSMUST00000206801 ENSMUSP00000145565 TRANSLATION protein_coding - - 1 167.0 7.0 2.4 0.0 98.5 0.0 -4,-5 0.0 - 4.002 MINOR ENSMUSG00000056383 AI987944 ENSMUST00000071804 ENSMUSP00000071708 TRANSLATION protein_coding - CCDS39920.1 1 406.0 42.0 3.4 0.4 282.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000030726 Pold3 ENSMUST00000129556 - NO_TRANSLATION retained_intron ENSMUSG00000030726 Pold3 ENSMUST00000127128 ENSMUSP00000115707 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 1.25 0.0 34.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030726 Pold3 ENSMUST00000156202 ENSMUSP00000146431 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 1.66 0.0 63.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030726 Pold3 ENSMUST00000130413 - NO_TRANSLATION retained_intron ENSMUSG00000030726 Pold3 ENSMUST00000208184 ENSMUSP00000146986 TRANSLATION protein_coding stop - 5 269.0 0.0 1.35 0.0 136.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000030726 Pold3 ENSMUST00000123675 - NO_TRANSLATION retained_intron ENSMUSG00000030726 Pold3 ENSMUST00000208704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030726 Pold3 ENSMUST00000156518 - NO_TRANSLATION retained_intron ENSMUSG00000030726 Pold3 ENSMUST00000208670 ENSMUSP00000146603 TRANSLATION protein_coding - - 5 422.0 0.0 3.51 4.0 360.2 0.0 -4,-5 0.1046 8 6.888 MINOR ENSMUSG00000030726 Pold3 ENSMUST00000032969 ENSMUSP00000032969 TRANSLATION protein_coding - CCDS21493.1 1 461.0 0.0 4.76 11.8 417.6 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000030846 Tial1 ENSMUST00000106228 ENSMUSP00000101835 TRANSLATION protein_coding - CCDS85428.1 1 336.0 0.0 6.896 12.7 171.4 0.0 -4,-5 0.5766 6 9.816 MINOR ENSMUSG00000030846 Tial1 ENSMUST00000141126 ENSMUSP00000145933 TRANSLATION protein_coding - - 5 244.0 0.0 4.316 2.0 93.9 0.0 -4,-5 0.0317 4 0.24 MINOR ENSMUSG00000030846 Tial1 ENSMUST00000136782 - NO_TRANSLATION retained_intron ENSMUSG00000030846 Tial1 ENSMUST00000133444 ENSMUSP00000145943 TRANSLATION nonsense_mediated_decay start - 5 106.0 0.0 2.75 0.0 62.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030846 Tial1 ENSMUST00000205774 - NO_TRANSLATION retained_intron ENSMUSG00000030846 Tial1 ENSMUST00000033135 ENSMUSP00000033135 TRANSLATION protein_coding - CCDS85429.1 1 375.0 0.0 7.976 17.8 214.9 0.0 -4,-5 1.0 6 15.802 PRINCIPAL:1 ENSMUSG00000030846 Tial1 ENSMUST00000152328 - NO_TRANSLATION retained_intron ENSMUSG00000030846 Tial1 ENSMUST00000123666 ENSMUSP00000116921 TRANSLATION nonsense_mediated_decay - - 5 135.0 0.0 3.528 2.0 99.4 0.0 -4,-5 0.0303 2 -2.0 MINOR ENSMUSG00000030846 Tial1 ENSMUST00000106226 ENSMUSP00000101833 TRANSLATION protein_coding - CCDS21897.1 1 392.0 0.0 8.076 16.6 193.0 0.0 -4,-5 0.9197 7 14.402 MINOR ENSMUSG00000030846 Tial1 ENSMUST00000141079 - NO_TRANSLATION retained_intron ENSMUSG00000030846 Tial1 ENSMUST00000205278 ENSMUSP00000145908 TRANSLATION nonsense_mediated_decay start - 5 140.0 0.0 3.298 0.0 85.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000030846 Tial1 ENSMUST00000133089 ENSMUSP00000146031 TRANSLATION nonsense_mediated_decay start - 5 42.0 0.0 0.75 0.0 25.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030846 Tial1 ENSMUST00000205835 ENSMUSP00000145770 TRANSLATION protein_coding - - 1 107.0 0.0 1.08 0.0 31.5 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000050708 Ftl1 ENSMUST00000210864 ENSMUSP00000147389 TRANSLATION protein_coding - - 5 160.0 3.0 3.8 0.0 54.4 0.0 -4,-7 0.0 8 9.51 MINOR ENSMUSG00000050708 Ftl1 ENSMUST00000211694 - NO_TRANSLATION retained_intron ENSMUSG00000050708 Ftl1 ENSMUST00000210106 ENSMUSP00000147526 TRANSLATION nonsense_mediated_decay - - 1 84.0 9.0 2.75 0.0 49.0 0.0 -4,-7 0.0071 2 -2.0 MINOR ENSMUSG00000050708 Ftl1 ENSMUST00000211500 - NO_TRANSLATION retained_intron ENSMUSG00000050708 Ftl1 ENSMUST00000094434 ENSMUSP00000092002 TRANSLATION protein_coding - CCDS39952.1 1 183.0 9.0 4.55 14.5 104.2 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000050708 Ftl1 ENSMUST00000210375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091962 Vmn2r78 ENSMUST00000232924 - NO_TRANSLATION retained_intron ENSMUSG00000091962 Vmn2r78 ENSMUST00000170835 ENSMUSP00000126698 TRANSLATION protein_coding - CCDS52302.1 5 853.0 5.0 1.885 0.3 367.5 0.0 2,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000091962 Vmn2r78 ENSMUST00000233033 ENSMUSP00000156510 TRANSLATION protein_coding - - - 563.0 3.0 1.485 0.0 153.7 0.0 2,-2 0.0023 - 7.728 MINOR ENSMUSG00000091962 Vmn2r78 ENSMUST00000233868 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000207928 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000207578 ENSMUSP00000146353 TRANSLATION protein_coding stop - 5 211.0 0.0 1.8 0.0 27.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030616 Sytl2 ENSMUST00000207431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030616 Sytl2 ENSMUST00000208486 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000209188 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000207629 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000190365 ENSMUSP00000158979 TRANSLATION protein_coding - - 1 2097.0 7.0 4.998 0.0 148.3 0.0 -4,-5 0.2691 24 14.0 MINOR ENSMUSG00000030616 Sytl2 ENSMUST00000239078 ENSMUSP00000158976 TRANSLATION protein_coding - - - 2153.0 7.0 4.998 0.0 148.3 0.0 -4,-5 0.2708 24 14.0 MINOR ENSMUSG00000030616 Sytl2 ENSMUST00000208580 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000208720 ENSMUSP00000147191 TRANSLATION non_stop_decay stop - 1 529.0 0.0 1.8 0.0 27.4 0.0 -4,-5 0.0009 5 -2.0 MINOR ENSMUSG00000030616 Sytl2 ENSMUST00000107210 ENSMUSP00000102828 TRANSLATION protein_coding - CCDS40017.1 1 910.0 7.0 4.998 6.3 148.3 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:4 ENSMUSG00000030616 Sytl2 ENSMUST00000208809 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000098310 ENSMUSP00000158991 TRANSLATION protein_coding - - 1 1280.0 7.0 3.198 0.0 120.9 0.0 -4,-5 0.0162 15 10.4 MINOR ENSMUSG00000030616 Sytl2 ENSMUST00000107211 ENSMUSP00000102829 TRANSLATION protein_coding - CCDS40018.1 1 934.0 7.0 4.998 6.3 148.3 0.0 -4,-5 0.9534 12 16.0 ALTERNATIVE:1 ENSMUSG00000030616 Sytl2 ENSMUST00000207455 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000207064 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000207872 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000190731 ENSMUSP00000139865 TRANSLATION protein_coding - CCDS80750.1 1 950.0 7.0 4.998 6.3 148.3 0.0 -4,-5 0.9214 12 16.0 ALTERNATIVE:1 ENSMUSG00000030616 Sytl2 ENSMUST00000189194 - NO_TRANSLATION retained_intron ENSMUSG00000030616 Sytl2 ENSMUST00000190837 ENSMUSP00000139450 TRANSLATION protein_coding - CCDS80751.1 1 923.0 7.0 4.998 5.2 148.3 0.0 -4,-5 0.9553 12 15.584 ALTERNATIVE:1 ENSMUSG00000073786 Gm7579 ENSMUST00000097943 ENSMUSP00000147547 TRANSLATION protein_coding - CCDS85465.1 - 243.0 0.0 0.0 0.0 39.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000093942 Or13a18 ENSMUST00000072655 ENSMUSP00000072445 TRANSLATION protein_coding - CCDS21981.1 - 318.0 0.0 1.0 0.3 171.1 7.0 -4,-6 0.5102 - 12.0 MINOR ENSMUSG00000093942 Or13a18 ENSMUST00000214180 ENSMUSP00000149158 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 4.5 171.1 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000093942 Or13a18 ENSMUST00000211771 ENSMUSP00000147582 TRANSLATION protein_coding - - 2 310.0 0.0 1.0 4.5 171.1 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040824 Snrpd2 ENSMUST00000206766 - NO_TRANSLATION retained_intron ENSMUSG00000040824 Snrpd2 ENSMUST00000049294 ENSMUSP00000037597 TRANSLATION protein_coding - CCDS20892.1 1 118.0 5.0 2.0 32.2 67.3 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000030583 Sipa1l3 ENSMUST00000183275 ENSMUSP00000138381 TRANSLATION protein_coding stop - 5 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0071 1 -2.0 MINOR ENSMUSG00000030583 Sipa1l3 ENSMUST00000183164 - NO_TRANSLATION retained_intron ENSMUSG00000030583 Sipa1l3 ENSMUST00000183330 ENSMUSP00000138345 TRANSLATION protein_coding start - 5 849.0 0.0 0.32 0.0 315.3 0.0 -4,-5 0.005 17 -2.0 MINOR ENSMUSG00000030583 Sipa1l3 ENSMUST00000182911 - NO_TRANSLATION retained_intron ENSMUSG00000030583 Sipa1l3 ENSMUST00000182529 - NO_TRANSLATION retained_intron ENSMUSG00000030583 Sipa1l3 ENSMUST00000182829 - NO_TRANSLATION retained_intron ENSMUSG00000030583 Sipa1l3 ENSMUST00000183081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030583 Sipa1l3 ENSMUST00000182702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030583 Sipa1l3 ENSMUST00000182484 ENSMUSP00000138714 TRANSLATION protein_coding - - 5 726.0 0.0 0.0 0.0 315.1 0.0 -4,-5 0.0053 15 0.0 MINOR ENSMUSG00000030583 Sipa1l3 ENSMUST00000183096 ENSMUSP00000138171 TRANSLATION protein_coding - CCDS39871.1 5 1776.0 0.0 3.24 4.0 538.7 0.0 -4,-5 1.0 36 14.0 PRINCIPAL:1 ENSMUSG00000030583 Sipa1l3 ENSMUST00000181975 ENSMUSP00000138592 TRANSLATION protein_coding stop - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0071 - -2.0 MINOR ENSMUSG00000030583 Sipa1l3 ENSMUST00000182009 - NO_TRANSLATION retained_intron ENSMUSG00000030583 Sipa1l3 ENSMUST00000085809 ENSMUSP00000082965 TRANSLATION protein_coding - CCDS39871.1 5 1776.0 0.0 3.24 4.0 538.7 0.0 -4,-5 1.0 36 14.0 PRINCIPAL:1 ENSMUSG00000030583 Sipa1l3 ENSMUST00000182780 ENSMUSP00000138311 TRANSLATION protein_coding start - 5 115.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030583 Sipa1l3 ENSMUST00000183085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030583 Sipa1l3 ENSMUST00000182223 - NO_TRANSLATION retained_intron ENSMUSG00000030583 Sipa1l3 ENSMUST00000182011 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030583 Sipa1l3 ENSMUST00000182236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053550 Shisa7 ENSMUST00000117452 ENSMUSP00000112405 TRANSLATION protein_coding start - 1 375.0 0.0 0.0 0.7 0.0 0.0 -1,-4 0.033 7 -2.0 MINOR ENSMUSG00000053550 Shisa7 ENSMUST00000066041 ENSMUSP00000064886 TRANSLATION protein_coding - - 1 558.0 0.0 0.0 3.0 78.3 0.0 2,-2 1.0 8 1.0 PRINCIPAL:2 ENSMUSG00000053550 Shisa7 ENSMUST00000119433 ENSMUSP00000112423 TRANSLATION protein_coding - CCDS71882.1 1 541.0 0.0 0.0 0.1 78.3 0.0 2,-2 0.4666 9 0.0 ALTERNATIVE:2 ENSMUSG00000053550 Shisa7 ENSMUST00000157068 - NO_TRANSLATION retained_intron ENSMUSG00000053550 Shisa7 ENSMUST00000132806 - NO_TRANSLATION retained_intron ENSMUSG00000042978 Sbk1 ENSMUST00000056028 ENSMUSP00000060907 TRANSLATION protein_coding - CCDS21824.1 1 417.0 21.0 4.25 4.9 169.7 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000042978 Sbk1 ENSMUST00000206424 ENSMUSP00000145733 TRANSLATION protein_coding stop - 3 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042978 Sbk1 ENSMUST00000239081 ENSMUSP00000159131 TRANSLATION protein_coding start - - 503.0 21.0 4.25 0.0 169.7 0.0 -4,-7 0.0456 2 -2.0 MINOR ENSMUSG00000042978 Sbk1 ENSMUST00000206541 ENSMUSP00000145750 TRANSLATION protein_coding start - 3 134.0 1.0 0.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000007837 Prrg2 ENSMUST00000007981 ENSMUSP00000007981 TRANSLATION protein_coding - CCDS21227.1 1 198.0 11.0 1.46 2.9 67.0 4.0 -1,-3 1.0 - 15.0 PRINCIPAL:2 ENSMUSG00000007837 Prrg2 ENSMUST00000211014 ENSMUSP00000147977 TRANSLATION protein_coding stop - 3 186.0 11.0 1.46 0.0 67.0 4.0 -1,-3 0.108 - -2.0 MINOR ENSMUSG00000007837 Prrg2 ENSMUST00000209920 ENSMUSP00000147598 TRANSLATION nonsense_mediated_decay - - 3 113.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0021 - -2.0 MINOR ENSMUSG00000007837 Prrg2 ENSMUST00000210493 ENSMUSP00000147844 TRANSLATION protein_coding stop - 2 155.0 11.0 1.46 0.0 67.0 4.0 -4,-7 0.0694 - -2.0 MINOR ENSMUSG00000007837 Prrg2 ENSMUST00000209417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007837 Prrg2 ENSMUST00000210690 ENSMUSP00000148014 TRANSLATION protein_coding - CCDS21227.1 1 198.0 11.0 1.46 2.9 67.0 4.0 -1,-3 1.0 - 15.0 PRINCIPAL:2 ENSMUSG00000007837 Prrg2 ENSMUST00000211337 ENSMUSP00000147709 TRANSLATION protein_coding - - 3 90.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0 - 0.0 MINOR ENSMUSG00000007837 Prrg2 ENSMUST00000211084 - NO_TRANSLATION retained_intron ENSMUSG00000007837 Prrg2 ENSMUST00000210500 ENSMUSP00000147380 TRANSLATION protein_coding - - 5 189.0 11.0 1.46 0.8 67.0 4.0 -2,-4 0.2233 - 14.0 ALTERNATIVE:2 ENSMUSG00000007837 Prrg2 ENSMUST00000210101 ENSMUSP00000148121 TRANSLATION protein_coding stop - 2 172.0 11.0 1.46 0.0 67.0 4.0 -1,-3 0.1095 - -2.0 MINOR ENSMUSG00000007837 Prrg2 ENSMUST00000209219 ENSMUSP00000148057 TRANSLATION protein_coding stop - 5 68.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0021 - -2.0 MINOR ENSMUSG00000051687 Vmn1r73 ENSMUST00000226516 ENSMUSP00000153827 TRANSLATION protein_coding - CCDS20800.1 - 303.0 0.0 0.0 0.4 91.1 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000051687 Vmn1r73 ENSMUST00000055070 ENSMUSP00000055353 TRANSLATION protein_coding - CCDS20800.1 - 303.0 0.0 0.0 0.4 91.1 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000007833 Aldh16a1 ENSMUST00000209957 ENSMUSP00000147268 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 0.25 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000007833 Aldh16a1 ENSMUST00000209889 - NO_TRANSLATION retained_intron ENSMUSG00000007833 Aldh16a1 ENSMUST00000211169 ENSMUSP00000148006 TRANSLATION protein_coding start - 3 112.0 0.0 0.612 0.0 0.0 0.0 -2,2 0.0 3 -2.0 MINOR ENSMUSG00000007833 Aldh16a1 ENSMUST00000210725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007833 Aldh16a1 ENSMUST00000107815 ENSMUSP00000103445 TRANSLATION protein_coding - - 1 754.0 2.0 9.276 0.0 374.8 0.0 -4,-5 0.0198 14 12.812 MINOR ENSMUSG00000007833 Aldh16a1 ENSMUST00000209963 ENSMUSP00000148069 TRANSLATION protein_coding - CCDS21231.1 1 802.0 2.0 9.756 9.9 378.6 0.0 -4,-5 1.0 15 17.0 PRINCIPAL:1 ENSMUSG00000007833 Aldh16a1 ENSMUST00000210125 ENSMUSP00000147622 TRANSLATION protein_coding start - 5 115.0 2.0 0.0 0.0 0.0 0.0 -4,-2 0.0008 - -2.0 MINOR ENSMUSG00000007833 Aldh16a1 ENSMUST00000209755 - NO_TRANSLATION retained_intron ENSMUSG00000007833 Aldh16a1 ENSMUST00000210352 - NO_TRANSLATION retained_intron ENSMUSG00000007833 Aldh16a1 ENSMUST00000211362 ENSMUSP00000147810 TRANSLATION nonsense_mediated_decay - - 3 53.0 0.0 0.25 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000007833 Aldh16a1 ENSMUST00000210539 - NO_TRANSLATION retained_intron ENSMUSG00000007833 Aldh16a1 ENSMUST00000209581 - NO_TRANSLATION retained_intron ENSMUSG00000066571 Garre1 ENSMUST00000146025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066571 Garre1 ENSMUST00000206245 - NO_TRANSLATION retained_intron ENSMUSG00000066571 Garre1 ENSMUST00000206018 - NO_TRANSLATION retained_intron ENSMUSG00000066571 Garre1 ENSMUST00000085592 ENSMUSP00000082730 TRANSLATION protein_coding - CCDS21139.1 1 1059.0 0.0 0.0 0.4 177.2 0.0 -4,-6 1.0 18 6.0 PRINCIPAL:1 ENSMUSG00000066571 Garre1 ENSMUST00000205618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066571 Garre1 ENSMUST00000206399 ENSMUSP00000145762 TRANSLATION protein_coding - - 1 847.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.0168 14 0.0 MINOR ENSMUSG00000066571 Garre1 ENSMUST00000108074 ENSMUSP00000103709 TRANSLATION protein_coding - CCDS21139.1 5 1059.0 0.0 0.0 0.4 177.2 0.0 -4,-6 1.0 18 6.0 PRINCIPAL:1 ENSMUSG00000066571 Garre1 ENSMUST00000205581 - NO_TRANSLATION retained_intron ENSMUSG00000066571 Garre1 ENSMUST00000205264 ENSMUSP00000145897 TRANSLATION protein_coding start/stop - 3 278.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0019 1 -2.0 MINOR ENSMUSG00000066571 Garre1 ENSMUST00000132975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030827 Fgf21 ENSMUST00000033099 ENSMUSP00000033099 TRANSLATION protein_coding - CCDS21253.1 1 210.0 0.0 2.6 7.2 67.7 0.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038406 Scaf1 ENSMUST00000210056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038406 Scaf1 ENSMUST00000209521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038406 Scaf1 ENSMUST00000209989 - NO_TRANSLATION retained_intron ENSMUSG00000038406 Scaf1 ENSMUST00000085383 ENSMUSP00000082501 TRANSLATION protein_coding - CCDS21225.1 1 1256.0 0.0 2.0 0.0 0.0 0.0 -4,-5 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000038406 Scaf1 ENSMUST00000211680 ENSMUSP00000147712 TRANSLATION protein_coding stop - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0319 - -2.0 MINOR ENSMUSG00000038406 Scaf1 ENSMUST00000211735 ENSMUSP00000148251 TRANSLATION protein_coding - CCDS21225.1 1 1256.0 0.0 2.0 0.0 0.0 0.0 -4,-5 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000066804 Vmn1r83 ENSMUST00000086229 ENSMUSP00000083406 TRANSLATION protein_coding - CCDS20807.1 - 306.0 0.0 0.0 0.4 94.5 4.0 0,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000066804 Vmn1r83 ENSMUST00000226701 ENSMUSP00000154521 TRANSLATION protein_coding - CCDS20807.1 - 306.0 0.0 0.0 0.4 94.5 4.0 0,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000056946 Or10a3m ENSMUST00000209620 ENSMUSP00000147972 TRANSLATION protein_coding - - - 314.0 0.0 1.0 12.5 207.8 9.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056946 Or10a3m ENSMUST00000074730 ENSMUSP00000074291 TRANSLATION protein_coding - CCDS21725.1 - 326.0 0.0 1.0 2.1 207.8 9.0 -4,-1 0.621 - 12.288 MINOR ENSMUSG00000117853 Vmn1r88 ENSMUST00000237109 ENSMUSP00000158479 TRANSLATION protein_coding - CCDS52026.1 - 316.0 0.0 0.0 0.0 100.7 4.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000117853 Vmn1r88 ENSMUST00000171783 ENSMUSP00000128946 TRANSLATION protein_coding - CCDS52026.1 - 316.0 0.0 0.0 0.0 100.7 4.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000117853 Vmn1r88 ENSMUST00000236472 ENSMUSP00000158066 TRANSLATION protein_coding - CCDS52026.1 - 316.0 0.0 0.0 0.0 100.7 4.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000057229 Dmac2 ENSMUST00000085953 ENSMUSP00000083115 TRANSLATION protein_coding - CCDS20988.1 1 257.0 0.0 4.25 0.0 0.0 0.0 -4,-1 0.341 4 6.0 MINOR ENSMUSG00000057229 Dmac2 ENSMUST00000147472 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057229 Dmac2 ENSMUST00000077338 ENSMUSP00000076563 TRANSLATION protein_coding - CCDS71917.1 1 258.0 0.0 4.25 5.8 0.0 0.0 -4,0 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000057229 Dmac2 ENSMUST00000126925 ENSMUSP00000145736 TRANSLATION nonsense_mediated_decay start - 3 94.0 0.0 0.5 0.0 0.0 0.0 -4,-2 0.0139 1 -2.0 MINOR ENSMUSG00000057229 Dmac2 ENSMUST00000130897 - NO_TRANSLATION retained_intron ENSMUSG00000057229 Dmac2 ENSMUST00000205593 - NO_TRANSLATION retained_intron ENSMUSG00000074003 Gucy2d ENSMUST00000205350 ENSMUSP00000145913 TRANSLATION protein_coding start - 3 178.0 1.0 3.68 0.0 183.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000074003 Gucy2d ENSMUST00000206524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074003 Gucy2d ENSMUST00000206435 ENSMUSP00000146093 TRANSLATION protein_coding - CCDS85343.1 5 1117.0 1.0 7.635 0.4 514.7 1.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074003 Gucy2d ENSMUST00000098274 ENSMUSP00000095875 TRANSLATION protein_coding start - 5 1116.0 1.0 7.635 0.4 514.7 1.0 -4,-7 0.6957 - -2.0 MINOR ENSMUSG00000070509 Rgma ENSMUST00000119206 ENSMUSP00000112599 TRANSLATION protein_coding - - 1 344.0 0.0 1.63 0.0 387.3 0.0 -4,-7 0.0 7 4.72 MINOR ENSMUSG00000070509 Rgma ENSMUST00000139780 ENSMUSP00000145758 TRANSLATION protein_coding - - 1 438.0 0.0 2.63 0.0 471.5 0.0 0,-3 0.8519 8 8.0 PRINCIPAL:2 ENSMUSG00000070509 Rgma ENSMUST00000206253 - NO_TRANSLATION retained_intron ENSMUSG00000070509 Rgma ENSMUST00000128471 ENSMUSP00000116552 TRANSLATION protein_coding stop - 3 100.0 0.0 1.33 0.0 78.2 0.0 0,-3 0.0016 1 -2.0 MINOR ENSMUSG00000070509 Rgma ENSMUST00000094312 ENSMUSP00000091870 TRANSLATION protein_coding - CCDS21362.2 1 454.0 0.0 2.63 0.4 471.5 0.0 -3,0 0.5144 8 8.0 ALTERNATIVE:2 ENSMUSG00000093639 Gm52993 ENSMUST00000177375 ENSMUSP00000158870 TRANSLATION nonsense_mediated_decay,RT - - 1 185.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.5824 - -2.0 PRINCIPAL:1 ENSMUSG00000059319 Or14c41 ENSMUST00000215365 ENSMUSP00000150377 TRANSLATION protein_coding - CCDS21432.1 3 309.0 0.0 1.0 2.8 157.8 6.0 -3,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000059319 Or14c41 ENSMUST00000078447 ENSMUSP00000077542 TRANSLATION protein_coding - CCDS21432.1 - 309.0 0.0 1.0 2.8 157.8 6.0 -3,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000007783 Cpt1c ENSMUST00000212217 - NO_TRANSLATION retained_intron ENSMUSG00000007783 Cpt1c ENSMUST00000063761 ENSMUSP00000069539 TRANSLATION protein_coding - CCDS21221.1 1 798.0 27.0 18.46 4.4 644.9 2.0 -4,-7 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000007783 Cpt1c ENSMUST00000212255 ENSMUSP00000148456 TRANSLATION protein_coding stop - 3 112.0 0.0 2.66 0.0 0.0 2.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000007783 Cpt1c ENSMUST00000212836 ENSMUSP00000148815 TRANSLATION protein_coding - CCDS21221.1 1 798.0 27.0 18.46 4.4 644.9 2.0 -4,-7 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000007783 Cpt1c ENSMUST00000211901 - NO_TRANSLATION retained_intron ENSMUSG00000007783 Cpt1c ENSMUST00000211862 ENSMUSP00000148366 TRANSLATION protein_coding start/stop - 3 200.0 3.0 5.31 0.0 76.7 2.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000007783 Cpt1c ENSMUST00000212890 - NO_TRANSLATION retained_intron ENSMUSG00000051591 Or2ag15 ENSMUST00000217734 ENSMUSP00000152039 TRANSLATION protein_coding - CCDS21668.1 5 317.0 0.0 1.0 0.0 157.8 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000051591 Or2ag15 ENSMUST00000050541 ENSMUSP00000055207 TRANSLATION protein_coding - CCDS21668.1 - 317.0 0.0 1.0 0.0 157.8 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078796 Zfp541 ENSMUST00000210805 ENSMUSP00000148143 TRANSLATION protein_coding - - 1 1302.0 11.0 4.9 0.4 88.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000078796 Zfp541 ENSMUST00000108509 ENSMUSP00000104149 TRANSLATION protein_coding - CCDS39781.1 1 1363.0 11.0 4.9 0.0 88.8 0.0 -4,-5 0.6901 - 14.0 ALTERNATIVE:2 ENSMUSG00000078796 Zfp541 ENSMUST00000209369 ENSMUSP00000147475 TRANSLATION protein_coding - CCDS39781.1 5 1363.0 11.0 4.9 0.0 88.8 0.0 -4,-5 0.6901 - 14.0 ALTERNATIVE:2 ENSMUSG00000074170 Plekhf1 ENSMUST00000098513 ENSMUSP00000096113 TRANSLATION protein_coding - CCDS21158.1 1 279.0 6.0 1.0 9.1 100.6 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000030605 Mfge8 ENSMUST00000205526 - NO_TRANSLATION retained_intron ENSMUSG00000030605 Mfge8 ENSMUST00000205929 - NO_TRANSLATION retained_intron ENSMUSG00000030605 Mfge8 ENSMUST00000107409 ENSMUSP00000103032 TRANSLATION protein_coding - CCDS39989.1 1 426.0 13.0 8.68 5.7 266.2 0.0 3,-2 1.0 17 19.868 PRINCIPAL:1 ENSMUSG00000030605 Mfge8 ENSMUST00000205688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030605 Mfge8 ENSMUST00000205563 ENSMUSP00000145720 TRANSLATION nonsense_mediated_decay - - 3 84.0 4.0 0.6 0.0 28.8 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000030605 Mfge8 ENSMUST00000205494 - NO_TRANSLATION retained_intron ENSMUSG00000030605 Mfge8 ENSMUST00000205649 - NO_TRANSLATION retained_intron ENSMUSG00000030605 Mfge8 ENSMUST00000206338 - NO_TRANSLATION retained_intron ENSMUSG00000030605 Mfge8 ENSMUST00000032825 ENSMUSP00000032825 TRANSLATION protein_coding - CCDS21379.1 1 463.0 12.0 8.746 0.0 266.2 0.0 3,-2 0.2415 17 17.334 MINOR ENSMUSG00000030605 Mfge8 ENSMUST00000206844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054672 Scart2 ENSMUST00000211749 - NO_TRANSLATION retained_intron ENSMUSG00000054672 Scart2 ENSMUST00000059882 - NO_TRANSLATION retained_intron ENSMUSG00000054672 Scart2 ENSMUST00000093984 ENSMUSP00000091520 TRANSLATION protein_coding - CCDS52434.1 1 996.0 5.0 2.87 0.0 597.7 0.0 3,-2 0.5706 - 13.0 ALTERNATIVE:2 ENSMUSG00000054672 Scart2 ENSMUST00000164583 ENSMUSP00000131905 TRANSLATION protein_coding - CCDS52433.1 1 1112.0 5.0 2.87 0.0 597.7 0.0 3,-2 1.0 - 13.0 PRINCIPAL:2 ENSMUSG00000054672 Scart2 ENSMUST00000210212 - NO_TRANSLATION retained_intron ENSMUSG00000049583 Grm5 ENSMUST00000208776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049583 Grm5 ENSMUST00000125009 ENSMUSP00000118393 TRANSLATION protein_coding - CCDS40013.1 5 1171.0 20.0 6.8 0.1 658.1 7.0 1,-2 1.0 19 14.0 PRINCIPAL:2 ENSMUSG00000049583 Grm5 ENSMUST00000107263 ENSMUSP00000102884 TRANSLATION protein_coding - CCDS40013.1 1 1171.0 20.0 6.8 0.1 658.1 7.0 1,-2 1.0 19 14.0 PRINCIPAL:2 ENSMUSG00000049583 Grm5 ENSMUST00000208878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049583 Grm5 ENSMUST00000208791 - NO_TRANSLATION retained_intron ENSMUSG00000049583 Grm5 ENSMUST00000138732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049583 Grm5 ENSMUST00000155358 ENSMUSP00000114927 TRANSLATION protein_coding - CCDS52305.1 1 1203.0 20.0 6.8 0.1 658.1 7.0 1,-2 0.699 20 14.0 ALTERNATIVE:2 ENSMUSG00000049739 Zfp646 ENSMUST00000206340 ENSMUSP00000145675 TRANSLATION protein_coding start - - 1562.0 95.0 0.3 0.0 262.5 0.0 -4,-5 0.1031 9 -2.0 MINOR ENSMUSG00000049739 Zfp646 ENSMUST00000131000 ENSMUSP00000115499 TRANSLATION protein_coding stop - 1 512.0 36.0 0.432 0.0 166.1 0.0 -4,-5 0.0503 7 -2.0 MINOR ENSMUSG00000049739 Zfp646 ENSMUST00000205364 - NO_TRANSLATION retained_intron ENSMUSG00000049739 Zfp646 ENSMUST00000050383 ENSMUSP00000052641 TRANSLATION protein_coding - CCDS21882.1 1 1788.0 102.0 0.432 0.1 302.7 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000073979 Or52b4 ENSMUST00000098229 ENSMUSP00000095831 TRANSLATION protein_coding - CCDS40050.1 - 311.0 0.0 1.0 11.8 349.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091874 Vmn1r56 ENSMUST00000169556 ENSMUSP00000128821 TRANSLATION protein_coding - CCDS20761.1 - 310.0 0.0 0.0 0.0 64.7 0.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096658 Vmn2r39 ENSMUST00000174388 ENSMUSP00000134010 TRANSLATION protein_coding - CCDS57488.1 5 861.0 3.0 2.2 0.0 386.7 0.0 1,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000092367 Gm20479 ENSMUST00000126587 ENSMUSP00000122630 TRANSLATION nonsense_mediated_decay,RT start - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000070551 Mrgprb5 ENSMUST00000094389 ENSMUSP00000091953 TRANSLATION protein_coding - CCDS21300.1 - 322.0 0.0 1.0 0.1 28.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094735 Vmn1r95 ENSMUST00000168984 ENSMUSP00000129501 TRANSLATION protein_coding - CCDS52069.1 - 307.0 0.0 0.0 0.4 55.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000092225 Gm2381 ENSMUST00000174558 ENSMUSP00000133949 TRANSLATION protein_coding - - 1 305.0 28.0 1.4 0.0 145.5 0.0 -4,-5 0.7991 - 18.0 PRINCIPAL:1 ENSMUSG00000030527 Crtc3 ENSMUST00000149176 ENSMUSP00000123107 TRANSLATION nonsense_mediated_decay start - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030527 Crtc3 ENSMUST00000154761 - NO_TRANSLATION retained_intron ENSMUSG00000030527 Crtc3 ENSMUST00000152668 - NO_TRANSLATION retained_intron ENSMUSG00000030527 Crtc3 ENSMUST00000127326 ENSMUSP00000117255 TRANSLATION nonsense_mediated_decay start - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030527 Crtc3 ENSMUST00000122255 ENSMUSP00000113540 TRANSLATION protein_coding - CCDS21398.2 1 619.0 0.0 1.6 7.3 366.3 0.0 -4,-2 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000030527 Crtc3 ENSMUST00000127182 - NO_TRANSLATION retained_intron ENSMUSG00000037640 Zfp60 ENSMUST00000125228 - NO_TRANSLATION retained_intron ENSMUSG00000037640 Zfp60 ENSMUST00000136373 ENSMUSP00000117049 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 1.0 0.0 84.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037640 Zfp60 ENSMUST00000130997 ENSMUSP00000118469 TRANSLATION protein_coding stop - 3 105.0 0.0 2.0 0.0 81.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037640 Zfp60 ENSMUST00000141753 - NO_TRANSLATION retained_intron ENSMUSG00000037640 Zfp60 ENSMUST00000042641 ENSMUSP00000036627 TRANSLATION protein_coding - CCDS21030.1 1 704.0 76.0 3.0 0.4 413.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000037640 Zfp60 ENSMUST00000167955 ENSMUSP00000132607 TRANSLATION protein_coding - CCDS21030.1 2 704.0 76.0 3.0 0.4 413.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000037640 Zfp60 ENSMUST00000126884 - NO_TRANSLATION retained_intron ENSMUSG00000037640 Zfp60 ENSMUST00000108336 ENSMUSP00000103973 TRANSLATION protein_coding - CCDS21030.1 1 704.0 76.0 3.0 0.4 413.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000109659 Or52s6 ENSMUST00000080660 ENSMUSP00000079489 TRANSLATION protein_coding - CCDS21573.1 - 314.0 0.0 1.0 9.0 346.6 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109659 Or52s6 ENSMUST00000215417 ENSMUSP00000151125 TRANSLATION protein_coding - CCDS21573.1 5 314.0 0.0 1.0 9.0 346.6 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039187 Fanci ENSMUST00000137667 ENSMUSP00000117992 TRANSLATION protein_coding start - 1 850.0 0.0 19.69 0.0 982.2 0.0 -4,-2 0.0707 8 -2.0 MINOR ENSMUSG00000039187 Fanci ENSMUST00000205817 ENSMUSP00000146293 TRANSLATION nonsense_mediated_decay start - 5 78.0 0.0 0.66 0.0 52.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039187 Fanci ENSMUST00000118959 ENSMUSP00000114122 TRANSLATION protein_coding - - 1 300.0 0.0 7.816 0.0 347.1 0.0 -4,-5 0.0013 3 0.0 MINOR ENSMUSG00000039187 Fanci ENSMUST00000206121 ENSMUSP00000146237 TRANSLATION nonsense_mediated_decay start - 5 111.0 0.0 2.25 0.0 59.9 0.0 0,-3 0.0011 - -2.0 MINOR ENSMUSG00000039187 Fanci ENSMUST00000126456 ENSMUSP00000114513 TRANSLATION protein_coding stop - 3 73.0 0.0 2.25 0.0 88.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039187 Fanci ENSMUST00000036865 ENSMUSP00000044931 TRANSLATION protein_coding - CCDS39991.1 5 1330.0 0.0 29.19 0.4 1517.3 0.0 -4,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000039187 Fanci ENSMUST00000132091 ENSMUSP00000122113 TRANSLATION nonsense_mediated_decay - - 1 394.0 0.0 10.1625 0.0 467.4 0.0 -4,-5 0.0086 4 -2.0 MINOR ENSMUSG00000060962 Dmkn ENSMUST00000188578 ENSMUSP00000140196 TRANSLATION protein_coding start - 5 303.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.047 10 -2.0 MINOR ENSMUSG00000060962 Dmkn ENSMUST00000041703 ENSMUSP00000042300 TRANSLATION protein_coding - CCDS39893.1 1 104.0 0.0 0.0 0.1 0.0 0.0 3,-2 0.3013 3 0.0 ALTERNATIVE:2 ENSMUSG00000060962 Dmkn ENSMUST00000085691 ENSMUSP00000082834 TRANSLATION protein_coding - CCDS39892.1 1 508.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.9674 14 0.0 PRINCIPAL:2 ENSMUSG00000060962 Dmkn ENSMUST00000085688 ENSMUSP00000082831 TRANSLATION protein_coding - CCDS52184.1 1 493.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.5477 13 0.0 ALTERNATIVE:2 ENSMUSG00000060962 Dmkn ENSMUST00000165887 ENSMUSP00000129031 TRANSLATION protein_coding - CCDS52183.1 1 524.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.5345 15 0.0 ALTERNATIVE:2 ENSMUSG00000030754 Copb1 ENSMUST00000211417 - NO_TRANSLATION retained_intron ENSMUSG00000030754 Copb1 ENSMUST00000209394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030754 Copb1 ENSMUST00000033012 ENSMUSP00000033012 TRANSLATION protein_coding - CCDS21759.1 1 953.0 0.0 13.5 36.9 413.5 0.0 -4,-5 1.0 45 16.0 PRINCIPAL:1 ENSMUSG00000062369 Usp17lb ENSMUST00000076501 ENSMUSP00000075822 TRANSLATION protein_coding - CCDS21628.1 1 468.0 8.0 0.6 0.0 178.1 0.0 -4,-5 0.8411 - 12.0 PRINCIPAL:4 ENSMUSG00000062369 Usp17lb ENSMUST00000106814 ENSMUSP00000102427 TRANSLATION protein_coding - - 1 467.0 8.0 0.6 0.0 178.1 0.0 -4,-5 0.7953 - 12.0 ALTERNATIVE:2 ENSMUSG00000094284 Vmn1r112 ENSMUST00000174538 ENSMUSP00000133944 TRANSLATION protein_coding - CCDS52081.1 - 297.0 0.0 0.0 0.0 25.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000006021 Kptn ENSMUST00000006178 ENSMUSP00000006178 TRANSLATION protein_coding - CCDS20844.1 1 430.0 10.0 0.0 9.0 0.0 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000006021 Kptn ENSMUST00000152044 - NO_TRANSLATION retained_intron ENSMUSG00000006021 Kptn ENSMUST00000127584 - NO_TRANSLATION retained_intron ENSMUSG00000006021 Kptn ENSMUST00000149388 - NO_TRANSLATION retained_intron ENSMUSG00000006021 Kptn ENSMUST00000130170 - NO_TRANSLATION retained_intron ENSMUSG00000006021 Kptn ENSMUST00000141430 - NO_TRANSLATION retained_intron ENSMUSG00000006021 Kptn ENSMUST00000129080 - NO_TRANSLATION retained_intron ENSMUSG00000006021 Kptn ENSMUST00000149255 - NO_TRANSLATION retained_intron ENSMUSG00000073943 Or52z15 ENSMUST00000098195 ENSMUSP00000095797 TRANSLATION protein_coding - - - 321.0 0.0 1.0 8.0 363.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037887 Dusp8 ENSMUST00000039926 ENSMUSP00000049414 TRANSLATION protein_coding - CCDS22024.1 1 663.0 8.0 4.4 0.0 185.9 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000037887 Dusp8 ENSMUST00000143661 ENSMUSP00000114307 TRANSLATION protein_coding stop - 3 231.0 0.0 3.4 0.0 72.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000109806 Or56b2j ENSMUST00000209914 ENSMUSP00000147953 TRANSLATION protein_coding_LoF stop - - 319.0 0.0 1.0 1.2 226.7 0.0 -4,-7 0.779 - -2.0 PRINCIPAL:1 ENSMUSG00000036835 Psenen ENSMUST00000207747 ENSMUSP00000146675 TRANSLATION protein_coding - CCDS21099.1 2 101.0 0.0 3.0 31.9 135.4 2.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000036835 Psenen ENSMUST00000207797 ENSMUSP00000147160 TRANSLATION protein_coding stop - 5 41.0 0.0 1.5 0.0 56.7 1.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000036835 Psenen ENSMUST00000208628 ENSMUSP00000146469 TRANSLATION protein_coding stop - 2 95.0 0.0 3.0 0.0 128.0 2.0 -4,-7 0.0501 1 -2.0 MINOR ENSMUSG00000036835 Psenen ENSMUST00000209110 - NO_TRANSLATION retained_intron ENSMUSG00000036835 Psenen ENSMUST00000207972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036835 Psenen ENSMUST00000043898 ENSMUSP00000044682 TRANSLATION protein_coding - CCDS21099.1 1 101.0 0.0 3.0 31.9 135.4 2.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000036835 Psenen ENSMUST00000207031 ENSMUSP00000146499 TRANSLATION protein_coding - - 3 66.0 0.0 1.75 0.0 50.5 1.0 -4,-6 0.0 - 4.404 MINOR ENSMUSG00000060177 Klk1b22 ENSMUST00000077528 ENSMUSP00000076733 TRANSLATION protein_coding - CCDS21196.1 1 259.0 6.0 4.0 6.1 234.8 0.0 4,-1 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000096773 Or52e8b ENSMUST00000215899 ENSMUSP00000149895 TRANSLATION protein_coding - - 5 317.0 0.0 1.0 3.9 392.0 6.0 -4,-6 0.3544 - 12.756 MINOR ENSMUSG00000096773 Or52e8b ENSMUST00000210113 ENSMUSP00000147900 TRANSLATION protein_coding - - 5 317.0 0.0 1.0 3.9 392.0 6.0 -4,-6 0.3544 - 12.756 MINOR ENSMUSG00000096773 Or52e8b ENSMUST00000214318 ENSMUSP00000150456 TRANSLATION protein_coding - - 5 317.0 0.0 1.0 3.9 392.0 6.0 -4,-6 0.3544 - 12.756 MINOR ENSMUSG00000096773 Or52e8b ENSMUST00000073102 ENSMUSP00000072847 TRANSLATION protein_coding - CCDS21636.1 - 313.0 0.0 1.0 12.5 392.0 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031085 Acte1 ENSMUST00000207482 ENSMUSP00000146606 TRANSLATION nonsense_mediated_decay - - 5 159.0 6.0 2.8 0.0 107.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031085 Acte1 ENSMUST00000207642 ENSMUSP00000146435 TRANSLATION nonsense_mediated_decay - - 5 46.0 6.0 1.33 0.0 32.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031085 Acte1 ENSMUST00000208153 ENSMUSP00000147148 TRANSLATION nonsense_mediated_decay - - 5 128.0 6.0 2.8 0.0 107.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031085 Acte1 ENSMUST00000207235 ENSMUSP00000146511 TRANSLATION nonsense_mediated_decay - - 5 128.0 6.0 2.8 0.0 107.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031085 Acte1 ENSMUST00000207630 ENSMUSP00000146335 TRANSLATION protein_coding - - 5 370.0 24.0 6.264 0.0 287.1 0.0 -4,-5 0.0713 1 12.006 MINOR ENSMUSG00000031085 Acte1 ENSMUST00000208457 ENSMUSP00000147033 TRANSLATION nonsense_mediated_decay - - 5 128.0 6.0 2.8 0.0 107.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031085 Acte1 ENSMUST00000208038 ENSMUSP00000146459 TRANSLATION nonsense_mediated_decay - - 5 150.0 6.0 2.8 0.0 107.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031085 Acte1 ENSMUST00000207388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031085 Acte1 ENSMUST00000152910 ENSMUSP00000115809 TRANSLATION protein_coding - - 5 372.0 25.0 7.264 2.6 342.6 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000031085 Acte1 ENSMUST00000134455 ENSMUSP00000146764 TRANSLATION nonsense_mediated_decay - - 5 89.0 6.0 1.8 0.0 63.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031085 Acte1 ENSMUST00000208761 ENSMUSP00000146470 TRANSLATION nonsense_mediated_decay - - 5 147.0 9.0 2.8 0.0 107.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031085 Acte1 ENSMUST00000208625 ENSMUSP00000146995 TRANSLATION nonsense_mediated_decay - - 5 46.0 6.0 1.33 0.0 32.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031085 Acte1 ENSMUST00000179036 ENSMUSP00000137404 TRANSLATION protein_coding start/stop - 5 330.0 20.0 6.264 0.0 282.6 0.0 -4,-5 0.0013 1 -2.0 MINOR ENSMUSG00000036111 Lmo1 ENSMUST00000208136 ENSMUSP00000146588 TRANSLATION protein_coding - CCDS85377.1 2 145.0 16.0 3.0 21.3 110.5 0.0 -4,-5 0.821 - 15.93 MINOR ENSMUSG00000036111 Lmo1 ENSMUST00000207178 ENSMUSP00000146752 TRANSLATION protein_coding - CCDS85378.1 2 155.0 16.0 3.165 36.0 110.5 0.0 -4,-5 0.9865 - 17.9 ALTERNATIVE:1 ENSMUSG00000036111 Lmo1 ENSMUST00000036992 ENSMUSP00000037079 TRANSLATION protein_coding - CCDS40080.1 1 156.0 16.0 3.132 36.9 110.5 0.0 -4,-5 1.0 - 17.934 PRINCIPAL:4 ENSMUSG00000045824 Or51t4 ENSMUST00000052997 ENSMUSP00000095815 TRANSLATION protein_coding - CCDS21554.1 - 346.0 0.0 1.0 0.0 318.4 5.0 -4,-5 0.6143 - 8.0 ALTERNATIVE:2 ENSMUSG00000045824 Or51t4 ENSMUST00000211329 ENSMUSP00000147694 TRANSLATION protein_coding - - - 336.0 0.0 1.0 0.1 318.4 5.0 -4,-5 0.8342 - 8.0 PRINCIPAL:4 ENSMUSG00000030965 Abraxas2 ENSMUST00000210077 - NO_TRANSLATION retained_intron ENSMUSG00000030965 Abraxas2 ENSMUST00000147786 ENSMUSP00000116254 TRANSLATION nonsense_mediated_decay start - 5 60.0 0.0 1.443 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000030965 Abraxas2 ENSMUST00000134784 ENSMUSP00000147850 TRANSLATION nonsense_mediated_decay start - 3 98.0 0.0 1.41 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000030965 Abraxas2 ENSMUST00000144225 - NO_TRANSLATION retained_intron ENSMUSG00000030965 Abraxas2 ENSMUST00000106161 ENSMUSP00000101767 TRANSLATION protein_coding start - 1 289.0 0.0 7.49 0.0 0.0 0.0 -4,-6 0.0363 7 -2.0 MINOR ENSMUSG00000030965 Abraxas2 ENSMUST00000129552 ENSMUSP00000120309 TRANSLATION nonsense_mediated_decay start - 1 160.0 0.0 4.49 0.0 0.0 0.0 -4,-6 0.0022 1 -2.0 MINOR ENSMUSG00000030965 Abraxas2 ENSMUST00000084497 ENSMUSP00000081541 TRANSLATION protein_coding - CCDS21928.3 1 424.0 0.0 7.49 4.2 0.0 0.0 -4,-6 1.0 10 8.0 PRINCIPAL:1 ENSMUSG00000030965 Abraxas2 ENSMUST00000138436 - NO_TRANSLATION retained_intron ENSMUSG00000070798 Psg25 ENSMUST00000094795 ENSMUSP00000092389 TRANSLATION protein_coding - CCDS20872.1 1 475.0 0.0 3.0 0.1 167.4 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095914 Vmn2r48 ENSMUST00000165611 ENSMUSP00000130631 TRANSLATION protein_coding - CCDS52006.1 5 855.0 4.0 2.25 0.1 385.5 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000045340 Vmn1r70 ENSMUST00000226182 - NO_TRANSLATION retained_intron ENSMUSG00000045340 Vmn1r70 ENSMUST00000055847 ENSMUSP00000054445 TRANSLATION protein_coding - CCDS20794.1 - 298.0 0.0 0.2 0.4 103.0 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045340 Vmn1r70 ENSMUST00000226255 ENSMUSP00000154041 TRANSLATION protein_coding - CCDS20794.1 - 298.0 0.0 0.2 0.4 103.0 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045340 Vmn1r70 ENSMUST00000228090 ENSMUSP00000154793 TRANSLATION protein_coding - - - 279.0 0.0 0.0 0.0 103.0 4.0 1,-1 0.1365 - 6.0 MINOR ENSMUSG00000070799 Psg26 ENSMUST00000094798 ENSMUSP00000092392 TRANSLATION protein_coding - CCDS20871.1 1 475.0 0.0 3.0 0.4 159.4 0.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040364 Sec1 ENSMUST00000040636 ENSMUSP00000045229 TRANSLATION protein_coding - CCDS71963.1 1 389.0 5.0 1.0 0.1 477.5 0.0 -4,-7 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000109542 Or5p51 ENSMUST00000220193 ENSMUSP00000151543 TRANSLATION protein_coding - CCDS21694.1 5 314.0 0.0 1.0 11.4 170.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109542 Or5p51 ENSMUST00000073059 ENSMUSP00000072810 TRANSLATION protein_coding - CCDS21694.1 - 314.0 0.0 1.0 11.4 170.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109542 Or5p51 ENSMUST00000219309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030614 Tmem126b ENSMUST00000123622 - NO_TRANSLATION retained_intron ENSMUSG00000030614 Tmem126b ENSMUST00000032843 ENSMUSP00000032843 TRANSLATION protein_coding - CCDS21448.1 1 230.0 0.0 3.0 6.5 231.1 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000054793 Cadm4 ENSMUST00000205820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054793 Cadm4 ENSMUST00000068023 ENSMUSP00000066880 TRANSLATION protein_coding - CCDS20951.1 1 388.0 0.0 6.25 5.7 123.7 0.0 4,-1 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000109824 4930516K23Rik ENSMUST00000138055 ENSMUSP00000139240 TRANSLATION nonsense_mediated_decay,RT - - 1 46.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - -2.0 PRINCIPAL:1 ENSMUSG00000070526 Peg12 ENSMUST00000094339 ENSMUSP00000091897 TRANSLATION protein_coding - CCDS21328.1 - 283.0 0.0 0.0 0.0 388.7 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000094010 Vmn1r119 ENSMUST00000164683 ENSMUSP00000127126 TRANSLATION protein_coding - CCDS52087.1 - 307.0 0.0 0.0 0.4 60.8 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000066263 Or51k1 ENSMUST00000106862 ENSMUSP00000102475 TRANSLATION protein_coding - CCDS40063.1 - 316.0 0.0 1.0 10.4 400.4 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066263 Or51k1 ENSMUST00000215653 ENSMUSP00000149743 TRANSLATION protein_coding - CCDS40063.1 5 316.0 0.0 1.0 10.4 400.4 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025469 Msx3 ENSMUST00000055353 ENSMUSP00000057312 TRANSLATION protein_coding - CCDS85451.1 1 146.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.0338 - 0.0 MINOR ENSMUSG00000025469 Msx3 ENSMUST00000172775 ENSMUSP00000133484 TRANSLATION protein_coding - CCDS21961.1 1 204.0 0.0 1.8 2.2 76.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000095773 Vmn2r38 ENSMUST00000108554 ENSMUSP00000104194 TRANSLATION protein_coding - CCDS57489.1 5 861.0 4.0 2.1 0.1 389.2 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000049676 Catsperg1 ENSMUST00000172226 - NO_TRANSLATION retained_intron ENSMUSG00000049676 Catsperg1 ENSMUST00000069861 ENSMUSP00000067388 TRANSLATION protein_coding - - 2 216.0 0.0 0.0 0.0 341.4 0.0 2,-1 0.0058 - 0.0 MINOR ENSMUSG00000049676 Catsperg1 ENSMUST00000163445 - NO_TRANSLATION retained_intron ENSMUSG00000049676 Catsperg1 ENSMUST00000171102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049676 Catsperg1 ENSMUST00000164653 ENSMUSP00000131827 TRANSLATION nonsense_mediated_decay - - 2 359.0 0.0 0.0 0.0 527.1 0.0 1,-1 0.0071 - -2.0 MINOR ENSMUSG00000049676 Catsperg1 ENSMUST00000163614 - NO_TRANSLATION retained_intron ENSMUSG00000049676 Catsperg1 ENSMUST00000166654 - NO_TRANSLATION retained_intron ENSMUSG00000049676 Catsperg1 ENSMUST00000165907 - NO_TRANSLATION retained_intron ENSMUSG00000049676 Catsperg1 ENSMUST00000163782 ENSMUSP00000127409 TRANSLATION nonsense_mediated_decay start - 1 93.0 0.0 0.0 0.0 168.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049676 Catsperg1 ENSMUST00000169143 ENSMUSP00000129837 TRANSLATION protein_coding - - 5 1151.0 0.0 0.0 0.1 1987.6 1.0 1,-1 0.9378 - 6.0 PRINCIPAL:1 ENSMUSG00000049676 Catsperg1 ENSMUST00000167064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049676 Catsperg1 ENSMUST00000047846 ENSMUSP00000045233 TRANSLATION protein_coding - CCDS52170.1 5 1098.0 0.0 0.0 0.0 1089.9 1.0 1,-1 0.3182 - 0.0 MINOR ENSMUSG00000049676 Catsperg1 ENSMUST00000166419 - NO_TRANSLATION retained_intron ENSMUSG00000049676 Catsperg1 ENSMUST00000085819 - NO_TRANSLATION retained_intron ENSMUSG00000045795 Whamm ENSMUST00000207123 ENSMUSP00000146687 TRANSLATION nonsense_mediated_decay - - 5 248.0 0.0 0.0 0.0 298.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000045795 Whamm ENSMUST00000209044 ENSMUSP00000146854 TRANSLATION protein_coding - - 1 489.0 0.0 1.8 0.0 382.7 0.0 -4,-5 0.0375 1 6.0 MINOR ENSMUSG00000045795 Whamm ENSMUST00000165460 ENSMUSP00000128881 TRANSLATION protein_coding - CCDS52283.1 1 793.0 0.0 1.8 0.1 627.1 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000100586 Vmn1r90 ENSMUST00000185220 ENSMUSP00000140455 TRANSLATION protein_coding - CCDS59703.1 - 309.0 0.0 0.0 0.0 44.8 7.0 -4,-5 0.4399 - 2.0 ALTERNATIVE:2 ENSMUSG00000100586 Vmn1r90 ENSMUST00000226510 ENSMUSP00000154700 TRANSLATION protein_coding - - - 227.0 0.0 0.0 0.0 40.2 6.0 -4,-7 0.0189 - 0.0 MINOR ENSMUSG00000100586 Vmn1r90 ENSMUST00000227692 ENSMUSP00000154752 TRANSLATION protein_coding - CCDS59703.1 - 309.0 0.0 0.0 0.0 44.8 7.0 -4,-5 0.4399 - 2.0 ALTERNATIVE:2 ENSMUSG00000100586 Vmn1r90 ENSMUST00000227855 ENSMUSP00000153726 TRANSLATION protein_coding - CCDS59703.1 - 309.0 0.0 0.0 0.0 44.8 7.0 -4,-5 0.4399 - 2.0 ALTERNATIVE:2 ENSMUSG00000100586 Vmn1r90 ENSMUST00000227566 ENSMUSP00000154440 TRANSLATION protein_coding - - - 302.0 0.0 0.0 0.0 44.8 7.0 -4,-5 0.7096 - 2.0 PRINCIPAL:2 ENSMUSG00000100586 Vmn1r90 ENSMUST00000226981 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000100586 Vmn1r90 ENSMUST00000226264 ENSMUSP00000153986 TRANSLATION protein_coding - CCDS59703.1 - 309.0 0.0 0.0 0.0 44.8 7.0 -4,-5 0.4399 - 2.0 ALTERNATIVE:2 ENSMUSG00000100586 Vmn1r90 ENSMUST00000226802 ENSMUSP00000154071 TRANSLATION protein_coding - CCDS59703.1 - 309.0 0.0 0.0 0.0 44.8 7.0 -4,-5 0.4399 - 2.0 ALTERNATIVE:2 ENSMUSG00000100586 Vmn1r90 ENSMUST00000227788 ENSMUSP00000154247 TRANSLATION protein_coding - CCDS59703.1 - 309.0 0.0 0.0 0.0 44.8 7.0 -4,-5 0.4399 - 2.0 ALTERNATIVE:2 ENSMUSG00000030579 Tyrobp ENSMUST00000032800 ENSMUSP00000032800 TRANSLATION protein_coding - CCDS21089.1 1 114.0 0.0 1.0 9.8 0.0 3.0 4,-1 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000030579 Tyrobp ENSMUST00000207982 ENSMUSP00000146494 TRANSLATION protein_coding start - 1 141.0 0.0 1.0 0.0 0.0 3.0 0,-3 0.0894 - -2.0 MINOR ENSMUSG00000030579 Tyrobp ENSMUST00000208125 ENSMUSP00000146653 TRANSLATION nonsense_mediated_decay start - 3 92.0 0.0 1.0 0.0 0.0 3.0 4,-1 0.1234 - -2.0 MINOR ENSMUSG00000030942 Thumpd1 ENSMUST00000209175 - NO_TRANSLATION retained_intron ENSMUSG00000030942 Thumpd1 ENSMUST00000033236 ENSMUSP00000033236 TRANSLATION protein_coding - CCDS21785.1 1 350.0 0.0 1.8 7.3 85.0 0.0 -4,-5 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000063764 Or5p80 ENSMUST00000072914 ENSMUSP00000072686 TRANSLATION protein_coding - CCDS21722.1 - 310.0 0.0 1.0 10.4 167.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030411 Nova2 ENSMUST00000220302 ENSMUSP00000151939 TRANSLATION protein_coding - CCDS20882.2 5 492.0 0.0 1.48 5.5 157.9 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000030411 Nova2 ENSMUST00000032571 ENSMUSP00000032571 TRANSLATION protein_coding - - 5 556.0 0.0 1.48 1.1 157.9 0.0 -2,-5 0.2703 7 12.044 MINOR ENSMUSG00000066500 Izumo2 ENSMUST00000207182 ENSMUSP00000146985 TRANSLATION protein_coding start - 3 143.0 0.0 0.0 0.0 78.5 1.0 -4,-5 0.0066 - -2.0 MINOR ENSMUSG00000066500 Izumo2 ENSMUST00000209004 ENSMUSP00000146467 TRANSLATION nonsense_mediated_decay - - 1 94.0 0.0 0.0 0.0 48.2 0.0 2,-2 0.0056 1 -2.0 MINOR ENSMUSG00000066500 Izumo2 ENSMUST00000085422 ENSMUSP00000082543 TRANSLATION protein_coding - CCDS52235.1 1 193.0 0.0 0.0 0.0 106.8 1.0 2,-2 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000050085 Or52a33 ENSMUST00000213536 ENSMUSP00000150390 TRANSLATION protein_coding - CCDS21583.1 5 317.0 0.0 1.0 12.7 333.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050085 Or52a33 ENSMUST00000216570 ENSMUSP00000151149 TRANSLATION protein_coding - CCDS21583.1 5 317.0 0.0 1.0 12.7 333.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050085 Or52a33 ENSMUST00000216337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050085 Or52a33 ENSMUST00000058744 ENSMUSP00000058312 TRANSLATION protein_coding - CCDS21583.1 - 317.0 0.0 1.0 12.7 333.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074199 Krtdap ENSMUST00000188036 - NO_TRANSLATION retained_intron ENSMUSG00000074199 Krtdap ENSMUST00000189962 ENSMUSP00000140489 TRANSLATION protein_coding - - 3 57.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0033 - 0.0 MINOR ENSMUSG00000074199 Krtdap ENSMUST00000190589 - NO_TRANSLATION retained_intron ENSMUSG00000074199 Krtdap ENSMUST00000098559 ENSMUSP00000096159 TRANSLATION protein_coding - CCDS21110.1 1 102.0 0.0 0.0 9.1 133.0 0.0 3,-2 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000074199 Krtdap ENSMUST00000190990 ENSMUSP00000139461 TRANSLATION protein_coding - - 1 91.0 0.0 0.0 0.4 104.3 0.0 3,-2 0.009 2 4.278 MINOR ENSMUSG00000074199 Krtdap ENSMUST00000187493 ENSMUSP00000140737 TRANSLATION protein_coding - - 2 88.0 0.0 0.0 5.4 88.9 0.0 3,-2 0.2747 1 4.983 MINOR ENSMUSG00000074199 Krtdap ENSMUST00000190480 - NO_TRANSLATION retained_intron ENSMUSG00000074199 Krtdap ENSMUST00000189673 ENSMUSP00000139443 TRANSLATION protein_coding - - 1 77.0 0.0 0.0 0.3 55.8 0.0 3,-2 0.0026 1 1.368 MINOR ENSMUSG00000074199 Krtdap ENSMUST00000186077 - NO_TRANSLATION retained_intron ENSMUSG00000055193 Klk15 ENSMUST00000068625 ENSMUSP00000066969 TRANSLATION protein_coding - CCDS21187.1 1 254.0 12.0 3.8 4.8 234.6 0.0 2,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000055193 Klk15 ENSMUST00000206955 ENSMUSP00000145717 TRANSLATION protein_coding start - 5 171.0 9.0 1.8 0.0 128.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070847 Vmn2r30 ENSMUST00000072475 ENSMUSP00000072296 TRANSLATION protein_coding - CCDS51994.1 5 852.0 4.0 2.05 0.1 381.4 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000070847 Vmn2r30 ENSMUST00000174368 ENSMUSP00000134223 TRANSLATION protein_coding - - 2 580.0 2.0 1.65 0.0 159.9 0.0 2,-3 0.0021 - 6.83 MINOR ENSMUSG00000070847 Vmn2r30 ENSMUST00000232929 - NO_TRANSLATION retained_intron ENSMUSG00000096145 Vkorc1 ENSMUST00000206053 ENSMUSP00000145795 TRANSLATION protein_coding - - 3 112.0 0.0 2.08 0.0 52.3 4.0 -4,-7 0.0054 - 7.35 MINOR ENSMUSG00000096145 Vkorc1 ENSMUST00000119922 ENSMUSP00000112542 TRANSLATION protein_coding - - 3 93.0 0.0 1.75 0.0 52.3 4.0 -4,-5 0.0047 - 6.69 MINOR ENSMUSG00000096145 Vkorc1 ENSMUST00000033074 ENSMUSP00000033074 TRANSLATION protein_coding - CCDS21883.1 1 161.0 0.0 3.08 10.3 93.8 4.0 1,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000090762 Vmn2r56 ENSMUST00000233902 ENSMUSP00000156571 TRANSLATION protein_coding - - - 824.0 0.0 2.9 0.0 413.1 10.0 -1,-4 0.0443 - 6.8 MINOR ENSMUSG00000090762 Vmn2r56 ENSMUST00000233304 ENSMUSP00000156754 TRANSLATION protein_coding - - - 865.0 0.0 3.5 0.0 447.9 10.0 -1,-4 0.8677 - 8.0 PRINCIPAL:2 ENSMUSG00000090762 Vmn2r56 ENSMUST00000233373 ENSMUSP00000156791 TRANSLATION protein_coding - - - 553.0 0.0 2.3 0.0 186.4 1.0 -1,-4 0.0049 - 3.6 MINOR ENSMUSG00000090762 Vmn2r56 ENSMUST00000163852 ENSMUSP00000129566 TRANSLATION protein_coding - CCDS52020.1 5 779.0 0.0 3.5 0.0 447.9 9.0 -4,-6 0.5916 - 8.0 ALTERNATIVE:2 ENSMUSG00000090762 Vmn2r56 ENSMUST00000233874 ENSMUSP00000156775 TRANSLATION protein_coding - - - 512.0 0.0 1.7 0.0 151.6 1.0 -1,-4 0.0049 - 2.4 MINOR ENSMUSG00000094197 Or5p54 ENSMUST00000054434 ENSMUSP00000055931 TRANSLATION protein_coding - CCDS21697.1 - 310.0 0.0 1.0 11.5 132.2 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030979 Uros ENSMUST00000151348 ENSMUSP00000121763 TRANSLATION protein_coding stop - 3 30.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030979 Uros ENSMUST00000153698 ENSMUSP00000117187 TRANSLATION protein_coding stop - 2 49.0 0.0 1.58 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030979 Uros ENSMUST00000124759 ENSMUSP00000119179 TRANSLATION protein_coding stop - 5 31.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030979 Uros ENSMUST00000106145 ENSMUSP00000101751 TRANSLATION protein_coding - CCDS21934.1 1 265.0 0.0 7.58 14.3 144.8 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000030979 Uros ENSMUST00000106146 ENSMUSP00000101752 TRANSLATION protein_coding - CCDS21934.1 5 265.0 0.0 7.58 14.3 144.8 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000030979 Uros ENSMUST00000033276 ENSMUSP00000033276 TRANSLATION protein_coding - CCDS21934.1 1 265.0 0.0 7.58 14.3 144.8 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000030979 Uros ENSMUST00000144789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030979 Uros ENSMUST00000106144 ENSMUSP00000101750 TRANSLATION protein_coding - CCDS80823.1 1 188.0 0.0 4.08 0.0 59.9 0.0 -4,-5 0.0009 4 0.906 MINOR ENSMUSG00000030979 Uros ENSMUST00000135760 - NO_TRANSLATION retained_intron ENSMUSG00000030979 Uros ENSMUST00000209636 ENSMUSP00000147433 TRANSLATION protein_coding stop - 5 59.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025147 Mob2 ENSMUST00000084418 ENSMUSP00000081455 TRANSLATION protein_coding - CCDS40190.1 1 235.0 4.0 4.58 12.6 196.0 0.0 -4,-5 1.0 2 14.925 PRINCIPAL:4 ENSMUSG00000025147 Mob2 ENSMUST00000210684 ENSMUSP00000148206 TRANSLATION nonsense_mediated_decay - - 1 98.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025147 Mob2 ENSMUST00000211633 - NO_TRANSLATION retained_intron ENSMUSG00000025147 Mob2 ENSMUST00000211505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025147 Mob2 ENSMUST00000209732 ENSMUSP00000147340 TRANSLATION protein_coding - - 3 266.0 4.0 4.58 12.9 196.0 0.0 -4,-6 0.939 2 15.0 ALTERNATIVE:1 ENSMUSG00000025147 Mob2 ENSMUST00000211000 ENSMUSP00000147643 TRANSLATION protein_coding - CCDS85460.1 5 150.0 2.0 2.33 1.1 128.5 0.0 -4,-5 0.004 1 3.524 MINOR ENSMUSG00000025147 Mob2 ENSMUST00000209725 ENSMUSP00000147705 TRANSLATION protein_coding stop - 5 126.0 2.0 2.58 0.0 63.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025147 Mob2 ENSMUST00000211206 ENSMUSP00000147608 TRANSLATION protein_coding - CCDS85460.1 1 150.0 2.0 2.33 1.1 128.5 0.0 -4,-5 0.004 1 3.524 MINOR ENSMUSG00000029461 Fam168a ENSMUST00000207078 - NO_TRANSLATION retained_intron ENSMUSG00000029461 Fam168a ENSMUST00000208406 - NO_TRANSLATION retained_intron ENSMUSG00000029461 Fam168a ENSMUST00000208387 - NO_TRANSLATION retained_intron ENSMUSG00000029461 Fam168a ENSMUST00000107042 ENSMUSP00000102657 TRANSLATION protein_coding - - 1 244.0 0.0 0.0 22.5 372.2 0.0 -4,-5 0.7764 4 5.028 ALTERNATIVE:1 ENSMUSG00000029461 Fam168a ENSMUST00000209084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029461 Fam168a ENSMUST00000207564 ENSMUSP00000147113 TRANSLATION protein_coding - - 5 129.0 0.0 0.0 1.0 140.0 0.0 -4,-5 0.002 2 0.0 MINOR ENSMUSG00000029461 Fam168a ENSMUST00000216021 ENSMUSP00000149345 TRANSLATION protein_coding - CCDS21505.1 5 235.0 0.0 0.0 29.4 365.2 0.0 -4,-5 1.0 4 5.334 PRINCIPAL:4 ENSMUSG00000029461 Fam168a ENSMUST00000208013 ENSMUSP00000146839 TRANSLATION protein_coding - - 5 260.0 0.0 0.0 2.2 362.0 0.0 -4,-5 0.0945 4 0.168 MINOR ENSMUSG00000029461 Fam168a ENSMUST00000049053 ENSMUSP00000038233 TRANSLATION protein_coding - CCDS21505.1 1 235.0 0.0 0.0 29.4 365.2 0.0 -4,-5 1.0 4 5.334 PRINCIPAL:4 ENSMUSG00000029461 Fam168a ENSMUST00000207875 ENSMUSP00000146851 TRANSLATION protein_coding - CCDS21505.1 1 235.0 0.0 0.0 29.4 365.2 0.0 -4,-5 1.0 4 5.334 PRINCIPAL:4 ENSMUSG00000000215 Ins2 ENSMUST00000105932 ENSMUSP00000101552 TRANSLATION protein_coding - CCDS22034.1 1 110.0 0.0 2.83 13.0 93.5 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000000215 Ins2 ENSMUST00000105930 ENSMUSP00000101550 TRANSLATION protein_coding - - 3 79.0 0.0 1.0 0.0 42.6 0.0 4,-1 0.0016 1 4.854 MINOR ENSMUSG00000000215 Ins2 ENSMUST00000105931 ENSMUSP00000101551 TRANSLATION protein_coding - - 1 106.0 0.0 1.0 0.0 43.6 0.0 4,-1 0.0192 1 4.914 MINOR ENSMUSG00000000215 Ins2 ENSMUST00000125933 ENSMUSP00000115147 TRANSLATION protein_coding stop - 5 70.0 0.0 1.33 0.0 44.4 0.0 4,-1 0.0006 1 -2.0 MINOR ENSMUSG00000000215 Ins2 ENSMUST00000000220 ENSMUSP00000000220 TRANSLATION protein_coding - CCDS22034.1 1 110.0 0.0 2.83 13.0 93.5 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000000215 Ins2 ENSMUST00000105934 ENSMUSP00000101554 TRANSLATION protein_coding - CCDS22034.1 3 110.0 0.0 2.83 13.0 93.5 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000000215 Ins2 ENSMUST00000210288 ENSMUSP00000147425 TRANSLATION protein_coding - CCDS22034.1 5 110.0 0.0 2.83 13.0 93.5 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000000215 Ins2 ENSMUST00000162317 ENSMUSP00000124643 TRANSLATION protein_coding - - 5 98.0 0.0 2.33 7.0 75.6 0.0 4,-1 0.3701 1 11.792 MINOR ENSMUSG00000000215 Ins2 ENSMUST00000105933 ENSMUSP00000101553 TRANSLATION protein_coding - CCDS22034.1 1 110.0 0.0 2.83 13.0 93.5 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030757 Zkscan2 ENSMUST00000042470 ENSMUSP00000041821 TRANSLATION protein_coding - CCDS40119.1 1 960.0 24.0 1.4 0.4 392.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030757 Zkscan2 ENSMUST00000206148 - NO_TRANSLATION retained_intron ENSMUSG00000030757 Zkscan2 ENSMUST00000125356 ENSMUSP00000122270 TRANSLATION protein_coding start - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030757 Zkscan2 ENSMUST00000128217 ENSMUSP00000134381 TRANSLATION protein_coding - - 1 271.0 0.0 0.6 0.0 124.9 0.0 -4,-5 0.0 - 2.574 MINOR ENSMUSG00000043964 Orai3 ENSMUST00000061587 ENSMUSP00000050279 TRANSLATION protein_coding - CCDS21878.1 1 290.0 0.0 0.85 8.3 226.0 3.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043964 Orai3 ENSMUST00000121504 ENSMUSP00000113142 TRANSLATION protein_coding - - 1 136.0 0.0 0.7 0.0 43.6 0.0 -4,-5 0.0 - 4.944 MINOR ENSMUSG00000043964 Orai3 ENSMUST00000118865 ENSMUSP00000112382 TRANSLATION protein_coding - - 3 176.0 0.0 0.85 0.0 165.0 1.0 -4,-5 0.0189 - 8.34 MINOR ENSMUSG00000044876 Zfp444 ENSMUST00000137450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044876 Zfp444 ENSMUST00000136777 ENSMUSP00000121948 TRANSLATION protein_coding stop - 3 137.0 0.0 1.948 0.0 117.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000044876 Zfp444 ENSMUST00000149540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044876 Zfp444 ENSMUST00000207176 ENSMUSP00000146697 TRANSLATION protein_coding stop - 3 104.0 0.0 1.75 0.0 117.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000044876 Zfp444 ENSMUST00000054680 ENSMUSP00000050797 TRANSLATION protein_coding - CCDS20770.1 1 331.0 16.0 2.648 0.8 161.5 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000044876 Zfp444 ENSMUST00000134933 ENSMUSP00000120003 TRANSLATION protein_coding stop - 5 112.0 0.0 1.948 0.0 117.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000044876 Zfp444 ENSMUST00000208192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044876 Zfp444 ENSMUST00000207329 ENSMUSP00000146759 TRANSLATION protein_coding stop - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000044876 Zfp444 ENSMUST00000108566 ENSMUSP00000104206 TRANSLATION protein_coding - CCDS20770.1 1 331.0 16.0 2.648 0.8 161.5 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000044876 Zfp444 ENSMUST00000108567 ENSMUSP00000104207 TRANSLATION protein_coding - CCDS20770.1 1 331.0 16.0 2.648 0.8 161.5 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000044876 Zfp444 ENSMUST00000128495 ENSMUSP00000121413 TRANSLATION protein_coding stop - 2 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044876 Zfp444 ENSMUST00000108565 ENSMUSP00000104205 TRANSLATION protein_coding - - 3 159.0 0.0 1.75 0.0 116.6 0.0 -4,-5 0.0007 1 7.272 MINOR ENSMUSG00000035228 Ccdc106 ENSMUST00000207215 ENSMUSP00000147063 TRANSLATION protein_coding stop - 3 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035228 Ccdc106 ENSMUST00000045543 ENSMUSP00000041033 TRANSLATION protein_coding - CCDS20757.1 1 279.0 0.0 0.0 10.9 325.7 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000035228 Ccdc106 ENSMUST00000208728 ENSMUSP00000146978 TRANSLATION protein_coding stop - 3 65.0 0.0 0.0 0.0 31.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035228 Ccdc106 ENSMUST00000108571 ENSMUSP00000104211 TRANSLATION protein_coding - CCDS80660.1 1 341.0 0.0 0.0 0.1 325.7 0.0 -4,-7 0.1892 - 6.0 MINOR ENSMUSG00000035228 Ccdc106 ENSMUST00000207974 ENSMUSP00000146775 TRANSLATION protein_coding - - 2 202.0 0.0 0.0 0.0 123.4 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000035228 Ccdc106 ENSMUST00000208161 ENSMUSP00000146642 TRANSLATION protein_coding stop - 3 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035228 Ccdc106 ENSMUST00000208042 ENSMUSP00000146998 TRANSLATION protein_coding stop - 5 109.0 0.0 0.0 0.0 77.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000092216 Gm19345 ENSMUST00000172815 ENSMUSP00000134044 TRANSLATION protein_coding - CCDS57502.1 1 124.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.8367 - 0.0 PRINCIPAL:1 ENSMUSG00000063230 Or13a22 ENSMUST00000217580 ENSMUSP00000149412 TRANSLATION nonsense_mediated_decay - CCDS21978.1 5 312.0 0.0 1.0 4.5 169.0 7.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000063230 Or13a22 ENSMUST00000216962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063230 Or13a22 ENSMUST00000214296 ENSMUSP00000149320 TRANSLATION protein_coding - CCDS21978.1 5 312.0 0.0 1.0 4.5 169.0 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063230 Or13a22 ENSMUST00000213715 ENSMUSP00000149468 TRANSLATION protein_coding - CCDS21978.1 5 312.0 0.0 1.0 4.5 169.0 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063230 Or13a22 ENSMUST00000216585 ENSMUSP00000150897 TRANSLATION nonsense_mediated_decay - CCDS21978.1 5 312.0 0.0 1.0 4.5 169.0 7.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000063230 Or13a22 ENSMUST00000217235 ENSMUSP00000149340 TRANSLATION protein_coding - CCDS21978.1 5 312.0 0.0 1.0 4.5 169.0 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063230 Or13a22 ENSMUST00000213339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063230 Or13a22 ENSMUST00000074897 ENSMUSP00000074435 TRANSLATION protein_coding - CCDS21978.1 - 312.0 0.0 1.0 4.5 169.0 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000052301 Doc2a ENSMUST00000139174 ENSMUSP00000117376 TRANSLATION protein_coding stop - 3 83.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000052301 Doc2a ENSMUST00000152406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052301 Doc2a ENSMUST00000147257 ENSMUSP00000123143 TRANSLATION protein_coding stop - 3 83.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000052301 Doc2a ENSMUST00000152051 ENSMUSP00000123483 TRANSLATION protein_coding stop - 5 262.0 12.0 4.312 0.0 86.5 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000052301 Doc2a ENSMUST00000137873 ENSMUSP00000119779 TRANSLATION protein_coding stop - 3 177.0 4.0 2.712 0.0 55.5 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000052301 Doc2a ENSMUST00000205938 ENSMUSP00000145630 TRANSLATION protein_coding stop - 5 35.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000052301 Doc2a ENSMUST00000176771 ENSMUSP00000135114 TRANSLATION nonsense_mediated_decay start - 5 211.0 12.0 4.812 0.0 86.5 0.0 -4,-5 0.0004 3 -2.0 MINOR ENSMUSG00000052301 Doc2a ENSMUST00000141805 ENSMUSP00000118143 TRANSLATION protein_coding stop - 5 133.0 3.0 1.382 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000052301 Doc2a ENSMUST00000064110 ENSMUSP00000070119 TRANSLATION protein_coding - CCDS21847.1 1 405.0 21.0 8.642 9.8 162.4 0.0 -4,-2 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000051965 Nanos2 ENSMUST00000063563 ENSMUSP00000069765 TRANSLATION protein_coding - CCDS20883.1 - 136.0 8.0 1.0 8.0 91.4 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000047544 Or51ac3 ENSMUST00000217293 ENSMUSP00000150954 TRANSLATION protein_coding - CCDS40058.1 5 317.0 0.0 1.0 7.8 387.6 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047544 Or51ac3 ENSMUST00000106886 ENSMUSP00000102499 TRANSLATION protein_coding - CCDS40058.1 - 317.0 0.0 1.0 7.8 387.6 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047544 Or51ac3 ENSMUST00000214806 ENSMUSP00000150171 TRANSLATION protein_coding - CCDS40058.1 5 317.0 0.0 1.0 7.8 387.6 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030553 Pgpep1l ENSMUST00000207874 ENSMUSP00000146996 TRANSLATION protein_coding - - 5 206.0 0.0 4.23 2.3 0.0 0.0 -4,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000030553 Pgpep1l ENSMUST00000032770 ENSMUSP00000032770 TRANSLATION protein_coding - CCDS52271.1 1 130.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.1002 - 1.542 MINOR ENSMUSG00000030741 Spns1 ENSMUST00000119846 ENSMUSP00000112954 TRANSLATION protein_coding - - 5 476.0 0.0 2.536 1.0 102.8 21.0 -4,-6 0.066 1 11.052 MINOR ENSMUSG00000030741 Spns1 ENSMUST00000138141 ENSMUSP00000117803 TRANSLATION nonsense_mediated_decay - - 1 165.0 0.0 0.836 0.0 39.8 5.0 -4,-6 0.0038 - -2.0 MINOR ENSMUSG00000030741 Spns1 ENSMUST00000205930 ENSMUSP00000146172 TRANSLATION protein_coding start/stop - 5 262.0 0.0 1.886 0.0 83.6 11.0 -4,-5 0.0028 1 -2.0 MINOR ENSMUSG00000030741 Spns1 ENSMUST00000206094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030741 Spns1 ENSMUST00000119754 ENSMUSP00000112555 TRANSLATION protein_coding - - 5 453.0 0.0 2.636 0.0 114.8 20.0 -4,-6 0.0593 1 12.0 MINOR ENSMUSG00000030741 Spns1 ENSMUST00000206377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030741 Spns1 ENSMUST00000150476 ENSMUSP00000115152 TRANSLATION protein_coding stop - 5 239.0 0.0 2.286 0.0 104.4 9.0 -4,-5 0.0055 1 -2.0 MINOR ENSMUSG00000030741 Spns1 ENSMUST00000137263 - NO_TRANSLATION retained_intron ENSMUSG00000030741 Spns1 ENSMUST00000032994 ENSMUSP00000032994 TRANSLATION protein_coding - CCDS21826.1 1 528.0 0.0 2.636 7.6 113.9 23.0 -4,-6 1.0 1 13.946 PRINCIPAL:1 ENSMUSG00000030741 Spns1 ENSMUST00000150748 - NO_TRANSLATION retained_intron ENSMUSG00000030741 Spns1 ENSMUST00000205366 ENSMUSP00000145761 TRANSLATION nonsense_mediated_decay - - 5 167.0 0.0 0.836 0.0 39.1 5.0 -4,-6 0.0038 - -2.0 MINOR ENSMUSG00000030741 Spns1 ENSMUST00000126810 - NO_TRANSLATION retained_intron ENSMUSG00000030741 Spns1 ENSMUST00000152000 - NO_TRANSLATION retained_intron ENSMUSG00000061702 Tmem91 ENSMUST00000126983 - NO_TRANSLATION retained_intron ENSMUSG00000061702 Tmem91 ENSMUST00000079439 ENSMUSP00000078407 TRANSLATION protein_coding - CCDS39840.1 1 172.0 0.0 0.0 5.6 68.2 5.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000061702 Tmem91 ENSMUST00000150883 ENSMUSP00000115089 TRANSLATION protein_coding start - 5 68.0 0.0 0.0 0.0 31.6 4.0 -4,-5 0.0039 - -2.0 MINOR ENSMUSG00000061702 Tmem91 ENSMUST00000150306 - NO_TRANSLATION retained_intron ENSMUSG00000061702 Tmem91 ENSMUST00000108404 ENSMUSP00000104041 TRANSLATION protein_coding - CCDS80681.1 5 123.0 0.0 0.0 2.0 31.6 4.0 -4,-6 0.0778 - 3.212 MINOR ENSMUSG00000061702 Tmem91 ENSMUST00000108405 ENSMUSP00000104042 TRANSLATION protein_coding - CCDS71918.1 3 141.0 0.0 0.0 1.1 35.1 4.0 -4,-6 0.0522 - 3.134 MINOR ENSMUSG00000096714 Or2ag17 ENSMUST00000216307 ENSMUSP00000149112 TRANSLATION protein_coding - CCDS21670.1 5 316.0 0.0 1.0 11.0 157.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096714 Or2ag17 ENSMUST00000215952 ENSMUSP00000150923 TRANSLATION protein_coding - CCDS21670.1 5 316.0 0.0 1.0 11.0 157.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096714 Or2ag17 ENSMUST00000065024 ENSMUSP00000068023 TRANSLATION protein_coding - CCDS21670.1 - 316.0 0.0 1.0 11.0 157.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045252 Zfp574 ENSMUST00000053410 ENSMUSP00000057817 TRANSLATION protein_coding - CCDS20971.1 1 900.0 76.0 0.32 5.6 197.7 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000045252 Zfp574 ENSMUST00000206530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045252 Zfp574 ENSMUST00000179556 ENSMUSP00000136547 TRANSLATION protein_coding - CCDS20971.1 1 900.0 76.0 0.32 5.6 197.7 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000045252 Zfp574 ENSMUST00000206733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030905 Crym ENSMUST00000134067 - NO_TRANSLATION retained_intron ENSMUSG00000030905 Crym ENSMUST00000033198 ENSMUSP00000033198 TRANSLATION protein_coding - CCDS21794.1 1 313.0 13.0 7.25 16.4 365.9 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000042340 Ctf1 ENSMUST00000206073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042340 Ctf1 ENSMUST00000206997 ENSMUSP00000146199 TRANSLATION protein_coding stop - 3 149.0 0.0 0.88 0.0 0.0 0.0 -4,-5 0.008 3 -2.0 MINOR ENSMUSG00000042340 Ctf1 ENSMUST00000047393 ENSMUSP00000049161 TRANSLATION protein_coding - CCDS21875.1 1 203.0 0.0 1.48 6.7 0.0 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000042340 Ctf1 ENSMUST00000206506 ENSMUSP00000145586 TRANSLATION protein_coding - CCDS85423.1 2 196.0 0.0 1.48 0.3 0.0 0.0 -4,-5 0.2895 3 6.0 MINOR ENSMUSG00000042340 Ctf1 ENSMUST00000205655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109324 Prmt1 ENSMUST00000207702 - NO_TRANSLATION retained_intron ENSMUSG00000109324 Prmt1 ENSMUST00000208778 ENSMUSP00000147193 TRANSLATION protein_coding start/stop - 5 193.0 9.0 5.66 0.0 0.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000109324 Prmt1 ENSMUST00000208312 ENSMUSP00000146526 TRANSLATION protein_coding stop - 5 217.0 26.0 4.825 0.0 33.7 0.0 -4,-5 0.0108 6 -2.0 MINOR ENSMUSG00000109324 Prmt1 ENSMUST00000208829 ENSMUSP00000147098 TRANSLATION protein_coding - - 5 122.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000109324 Prmt1 ENSMUST00000207370 ENSMUSP00000147252 TRANSLATION protein_coding - CCDS57547.1 1 353.0 26.0 9.66 14.3 36.1 0.0 -4,-5 0.9525 17 17.748 ALTERNATIVE:1 ENSMUSG00000109324 Prmt1 ENSMUST00000209124 ENSMUSP00000146395 TRANSLATION protein_coding - - 5 208.0 3.0 6.08 1.0 0.0 0.0 -4,-6 0.0114 12 0.0 MINOR ENSMUSG00000109324 Prmt1 ENSMUST00000208938 ENSMUSP00000146804 TRANSLATION protein_coding start - 3 113.0 17.0 2.54 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000109324 Prmt1 ENSMUST00000045325 ENSMUSP00000045365 TRANSLATION protein_coding - - 5 318.0 22.0 8.91 0.0 36.1 0.0 -4,-5 0.0187 17 9.836 MINOR ENSMUSG00000109324 Prmt1 ENSMUST00000107843 ENSMUSP00000103474 TRANSLATION protein_coding - CCDS21222.1 1 371.0 26.0 9.66 15.2 36.1 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:4 ENSMUSG00000109324 Prmt1 ENSMUST00000207735 - NO_TRANSLATION retained_intron ENSMUSG00000109324 Prmt1 ENSMUST00000209056 ENSMUSP00000146655 TRANSLATION protein_coding start/stop - 5 164.0 22.0 4.08 0.0 32.3 0.0 -4,-5 0.0091 3 -2.0 MINOR ENSMUSG00000109324 Prmt1 ENSMUST00000207522 ENSMUSP00000147201 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000109324 Prmt1 ENSMUST00000207659 ENSMUSP00000147101 TRANSLATION protein_coding - CCDS85293.1 5 254.0 22.0 6.33 0.0 28.6 0.0 -4,-5 0.0106 10 3.336 MINOR ENSMUSG00000109324 Prmt1 ENSMUST00000208897 - NO_TRANSLATION retained_intron ENSMUSG00000045540 Or52ad1 ENSMUST00000215042 ENSMUSP00000148967 TRANSLATION protein_coding - CCDS21569.1 5 314.0 0.0 1.0 8.9 323.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045540 Or52ad1 ENSMUST00000056222 ENSMUSP00000053887 TRANSLATION protein_coding - CCDS21569.1 - 314.0 0.0 1.0 8.9 323.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038670 Mybpc2 ENSMUST00000165208 ENSMUSP00000130127 TRANSLATION protein_coding - CCDS52233.1 1 1136.0 0.0 20.964 4.9 452.6 0.0 -4,-5 1.0 52 14.0 PRINCIPAL:1 ENSMUSG00000038670 Mybpc2 ENSMUST00000207516 ENSMUSP00000146698 TRANSLATION protein_coding start/stop - 5 155.0 0.0 3.55 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000055610 Or14a260 ENSMUST00000217494 ENSMUSP00000149779 TRANSLATION protein_coding - CCDS21426.1 5 313.0 0.0 0.8 1.1 144.3 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000055610 Or14a260 ENSMUST00000069279 ENSMUSP00000063538 TRANSLATION protein_coding - CCDS21426.1 - 313.0 0.0 0.8 1.1 144.3 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000055610 Or14a260 ENSMUST00000213705 ENSMUSP00000151140 TRANSLATION protein_coding - CCDS21426.1 5 313.0 0.0 0.8 1.1 144.3 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000109859 Gm45618 ENSMUST00000209890 ENSMUSP00000147854 TRANSLATION protein_coding - CCDS85462.1 - 219.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8887 - 0.0 PRINCIPAL:1 ENSMUSG00000030607 Acan ENSMUST00000206779 ENSMUSP00000146292 TRANSLATION protein_coding start - 1 748.0 17.0 3.75 0.0 135.9 0.0 -4,-5 0.0053 9 -2.0 MINOR ENSMUSG00000030607 Acan ENSMUST00000032835 ENSMUSP00000032835 TRANSLATION protein_coding - CCDS21377.1 1 2132.0 17.0 6.5 0.1 557.3 0.0 3,-2 1.0 24 18.0 PRINCIPAL:1 ENSMUSG00000039194 Rlbp1 ENSMUST00000206162 ENSMUSP00000146196 TRANSLATION protein_coding stop - 3 262.0 18.0 5.5 0.0 127.5 0.0 -4,-5 0.0006 5 -2.0 MINOR ENSMUSG00000039194 Rlbp1 ENSMUST00000205638 ENSMUSP00000146144 TRANSLATION protein_coding stop - 3 61.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039194 Rlbp1 ENSMUST00000206320 ENSMUSP00000145611 TRANSLATION protein_coding stop - 5 175.0 2.0 3.5 0.0 28.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039194 Rlbp1 ENSMUST00000205442 ENSMUSP00000145850 TRANSLATION protein_coding stop - 5 120.0 0.0 2.5 0.0 28.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039194 Rlbp1 ENSMUST00000206624 - NO_TRANSLATION retained_intron ENSMUSG00000039194 Rlbp1 ENSMUST00000179243 ENSMUSP00000137143 TRANSLATION protein_coding - CCDS39990.1 1 317.0 19.0 6.5 28.6 153.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000039194 Rlbp1 ENSMUST00000206695 ENSMUSP00000146075 TRANSLATION protein_coding stop - 3 29.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039194 Rlbp1 ENSMUST00000053718 ENSMUSP00000054545 TRANSLATION protein_coding - CCDS39990.1 1 317.0 19.0 6.5 28.6 153.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000046027 Stard5 ENSMUST00000075418 ENSMUSP00000074872 TRANSLATION protein_coding - CCDS21411.1 1 213.0 0.0 5.5 10.7 73.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000046027 Stard5 ENSMUST00000130723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046027 Stard5 ENSMUST00000146469 - NO_TRANSLATION retained_intron ENSMUSG00000046027 Stard5 ENSMUST00000117410 ENSMUSP00000112781 TRANSLATION protein_coding - - 1 206.0 0.0 4.58 0.0 51.4 0.0 -4,-5 0.0072 3 8.364 MINOR ENSMUSG00000046027 Stard5 ENSMUST00000150174 - NO_TRANSLATION retained_intron ENSMUSG00000030769 Slc5a11 ENSMUST00000127655 ENSMUSP00000117956 TRANSLATION protein_coding stop - 3 152.0 0.0 2.925 0.0 101.3 5.0 -4,-7 0.0022 - -2.0 MINOR ENSMUSG00000030769 Slc5a11 ENSMUST00000140721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030769 Slc5a11 ENSMUST00000033035 ENSMUSP00000033035 TRANSLATION protein_coding - CCDS21819.1 1 673.0 0.0 11.319 5.9 470.2 14.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000030769 Slc5a11 ENSMUST00000131209 ENSMUSP00000120678 TRANSLATION protein_coding start/stop - 5 72.0 0.0 1.878 0.0 56.7 5.0 0,-4 0.004 - -2.0 MINOR ENSMUSG00000030769 Slc5a11 ENSMUST00000131933 ENSMUSP00000121459 TRANSLATION protein_coding stop - 5 402.0 0.0 8.819 0.0 365.8 12.0 -4,-7 0.0035 6 -2.0 MINOR ENSMUSG00000030769 Slc5a11 ENSMUST00000131461 ENSMUSP00000123027 TRANSLATION protein_coding stop - 3 64.0 0.0 0.2 0.0 0.0 2.0 -4,-6 0.0002 - -2.0 MINOR ENSMUSG00000030769 Slc5a11 ENSMUST00000206180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030769 Slc5a11 ENSMUST00000167299 ENSMUSP00000127977 TRANSLATION protein_coding - CCDS21819.1 5 673.0 0.0 11.319 5.9 470.2 14.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000084234 4933405O20Rik ENSMUST00000119710 ENSMUSP00000138215 TRANSLATION protein_coding - CCDS71974.1 - 396.0 29.0 1.0 0.1 225.4 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000040046 Tph1 ENSMUST00000163468 - NO_TRANSLATION retained_intron ENSMUSG00000040046 Tph1 ENSMUST00000049298 ENSMUSP00000037752 TRANSLATION protein_coding - CCDS21280.1 1 447.0 14.0 9.05 8.4 602.6 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000040046 Tph1 ENSMUST00000168335 ENSMUSP00000128107 TRANSLATION protein_coding - CCDS71970.1 1 155.0 0.0 2.38 0.0 61.9 0.0 -4,-5 0.0025 - 0.0 MINOR ENSMUSG00000040046 Tph1 ENSMUST00000170045 - NO_TRANSLATION retained_intron ENSMUSG00000040046 Tph1 ENSMUST00000107669 ENSMUSP00000103296 TRANSLATION protein_coding - CCDS21280.1 1 447.0 14.0 9.05 8.4 602.6 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000040046 Tph1 ENSMUST00000110264 - NO_TRANSLATION retained_intron ENSMUSG00000040046 Tph1 ENSMUST00000172386 ENSMUSP00000128727 TRANSLATION nonsense_mediated_decay start - 5 205.0 0.0 3.05 0.0 102.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040046 Tph1 ENSMUST00000170251 ENSMUSP00000132489 TRANSLATION nonsense_mediated_decay - - 5 287.0 6.0 5.05 0.0 329.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000097972 Scgb2b15 ENSMUST00000183050 ENSMUSP00000138205 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0768 - -2.0 MINOR ENSMUSG00000097972 Scgb2b15 ENSMUST00000182975 ENSMUSP00000138802 TRANSLATION protein_coding - CCDS59727.1 2 82.0 0.0 -0.15 0.0 25.1 0.0 1,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030956 Fam53b ENSMUST00000148303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030956 Fam53b ENSMUST00000146460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030956 Fam53b ENSMUST00000140865 ENSMUSP00000116561 TRANSLATION protein_coding stop - 3 26.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000030956 Fam53b ENSMUST00000106166 ENSMUSP00000101772 TRANSLATION protein_coding - - 1 309.0 0.0 0.0 0.0 376.4 0.0 -4,-1 0.0563 6 6.0 MINOR ENSMUSG00000030956 Fam53b ENSMUST00000065371 ENSMUSP00000070763 TRANSLATION protein_coding - CCDS21926.1 1 422.0 0.0 0.0 9.8 376.4 0.0 -4,-1 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000030956 Fam53b ENSMUST00000106165 ENSMUSP00000101771 TRANSLATION protein_coding - - 1 309.0 0.0 0.0 0.0 376.4 0.0 -4,-1 0.0563 6 6.0 MINOR ENSMUSG00000030956 Fam53b ENSMUST00000097999 ENSMUSP00000095608 TRANSLATION protein_coding - CCDS21926.1 1 422.0 0.0 0.0 9.8 376.4 0.0 -4,-1 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000030956 Fam53b ENSMUST00000106168 ENSMUSP00000101774 TRANSLATION protein_coding - CCDS85437.1 1 392.0 0.0 0.0 4.3 343.0 0.0 -4,-5 0.4265 7 5.121 MINOR ENSMUSG00000030956 Fam53b ENSMUST00000106169 ENSMUSP00000101775 TRANSLATION protein_coding - CCDS21926.1 1 422.0 0.0 0.0 9.8 376.4 0.0 -4,-1 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000030956 Fam53b ENSMUST00000097998 ENSMUSP00000095607 TRANSLATION protein_coding - - 1 96.0 0.0 0.0 0.0 28.4 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000030956 Fam53b ENSMUST00000134946 ENSMUSP00000118953 TRANSLATION protein_coding stop - 3 65.0 0.0 0.0 0.0 56.6 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000008318 Relt ENSMUST00000008462 ENSMUSP00000008462 TRANSLATION protein_coding - CCDS21506.1 1 436.0 0.0 1.175 0.3 95.4 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000008318 Relt ENSMUST00000156855 ENSMUSP00000120042 TRANSLATION protein_coding stop - 5 123.0 0.0 0.675 0.0 30.8 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000008318 Relt ENSMUST00000155413 ENSMUSP00000118150 TRANSLATION nonsense_mediated_decay - - 1 119.0 0.0 0.675 0.0 30.8 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000008318 Relt ENSMUST00000142885 ENSMUSP00000121049 TRANSLATION protein_coding stop - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0006 - -2.0 MINOR ENSMUSG00000008318 Relt ENSMUST00000136231 ENSMUSP00000121443 TRANSLATION protein_coding stop - 2 119.0 0.0 0.675 0.0 30.8 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000008318 Relt ENSMUST00000139604 ENSMUSP00000119208 TRANSLATION protein_coding stop - 5 123.0 0.0 0.675 0.0 30.8 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000043432 Leng9 ENSMUST00000058358 ENSMUSP00000061079 TRANSLATION protein_coding - CCDS20732.1 - 485.0 4.0 0.0 0.0 133.5 0.0 -4,-6 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000062542 Syt9 ENSMUST00000130414 ENSMUSP00000122049 TRANSLATION nonsense_mediated_decay - - 5 186.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0022 3 -2.0 MINOR ENSMUSG00000062542 Syt9 ENSMUST00000073459 ENSMUSP00000073164 TRANSLATION protein_coding - CCDS40078.1 1 491.0 19.0 4.3 14.0 176.4 1.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000062542 Syt9 ENSMUST00000137663 ENSMUSP00000117969 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000062542 Syt9 ENSMUST00000127444 - NO_TRANSLATION retained_intron ENSMUSG00000062542 Syt9 ENSMUST00000144003 - NO_TRANSLATION retained_intron ENSMUSG00000030889 Vwa3a ENSMUST00000033180 ENSMUSP00000033180 TRANSLATION protein_coding - CCDS40112.1 5 1148.0 4.0 0.979 0.1 206.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030889 Vwa3a ENSMUST00000167213 ENSMUSP00000133029 TRANSLATION protein_coding - CCDS40112.1 1 1148.0 4.0 0.979 0.1 206.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030889 Vwa3a ENSMUST00000166083 ENSMUSP00000129757 TRANSLATION protein_coding start - 5 159.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030889 Vwa3a ENSMUST00000207721 - NO_TRANSLATION retained_intron ENSMUSG00000030889 Vwa3a ENSMUST00000165055 ENSMUSP00000129672 TRANSLATION protein_coding start - 3 197.0 0.0 0.429 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030889 Vwa3a ENSMUST00000166668 ENSMUSP00000129136 TRANSLATION protein_coding - CCDS40112.1 1 1148.0 4.0 0.979 0.1 206.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030889 Vwa3a ENSMUST00000168600 ENSMUSP00000132372 TRANSLATION nonsense_mediated_decay - - 1 609.0 0.0 0.979 0.0 151.4 0.0 -4,-5 0.0313 3 -2.0 MINOR ENSMUSG00000030889 Vwa3a ENSMUST00000168430 ENSMUSP00000146973 TRANSLATION protein_coding start - 5 89.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000003379 Cd79a ENSMUST00000003469 ENSMUSP00000003469 TRANSLATION protein_coding - CCDS20967.1 1 220.0 0.0 2.6 8.2 63.3 0.0 3,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000041578 Crx ENSMUST00000044434 ENSMUSP00000043436 TRANSLATION protein_coding - CCDS20840.1 1 299.0 0.0 2.03 8.6 133.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041578 Crx ENSMUST00000172758 ENSMUSP00000134463 TRANSLATION protein_coding - - 3 74.0 0.0 1.0 0.0 33.4 0.0 -4,-6 0.0 - 2.964 MINOR ENSMUSG00000041578 Crx ENSMUST00000132563 ENSMUSP00000133833 TRANSLATION protein_coding stop - 2 208.0 0.0 2.03 0.0 78.5 0.0 -4,-6 0.0163 - -2.0 MINOR ENSMUSG00000041578 Crx ENSMUST00000174358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041578 Crx ENSMUST00000174318 ENSMUSP00000134400 TRANSLATION protein_coding - CCDS52035.1 1 323.0 0.0 2.03 0.0 133.3 0.0 -4,-2 0.2162 - 12.0 MINOR ENSMUSG00000053720 Vmn2r43 ENSMUST00000066317 ENSMUSP00000069647 TRANSLATION protein_coding - CCDS57484.1 1 845.0 3.0 2.32 0.0 392.6 0.0 1,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050428 Fbxo46 ENSMUST00000165913 ENSMUSP00000129427 TRANSLATION protein_coding - CCDS20890.1 1 603.0 8.0 0.0 0.7 26.0 0.0 -4,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000050428 Fbxo46 ENSMUST00000053109 ENSMUSP00000055692 TRANSLATION protein_coding - CCDS20890.1 1 603.0 8.0 0.0 0.7 26.0 0.0 -4,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000055026 Gabrg3 ENSMUST00000171965 - NO_TRANSLATION retained_intron ENSMUSG00000055026 Gabrg3 ENSMUST00000068911 ENSMUSP00000067632 TRANSLATION protein_coding - CCDS21320.1 1 467.0 0.0 6.175 6.2 298.8 0.0 4,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000055026 Gabrg3 ENSMUST00000068394 ENSMUSP00000065255 TRANSLATION protein_coding - - 1 145.0 0.0 1.35 0.0 0.0 0.0 4,-1 0.0008 1 0.0 MINOR ENSMUSG00000043866 Taf10 ENSMUST00000131683 - NO_TRANSLATION retained_intron ENSMUSG00000043866 Taf10 ENSMUST00000141116 ENSMUSP00000118105 TRANSLATION protein_coding - CCDS21660.1 1 218.0 0.0 2.74 8.0 91.9 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000043866 Taf10 ENSMUST00000146999 - NO_TRANSLATION retained_intron ENSMUSG00000043866 Taf10 ENSMUST00000054556 - NO_TRANSLATION retained_intron ENSMUSG00000037606 Osbpl5 ENSMUST00000153864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037606 Osbpl5 ENSMUST00000134056 ENSMUSP00000115141 TRANSLATION protein_coding stop - 3 199.0 0.0 1.2 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000037606 Osbpl5 ENSMUST00000140502 - NO_TRANSLATION retained_intron ENSMUSG00000037606 Osbpl5 ENSMUST00000149736 - NO_TRANSLATION retained_intron ENSMUSG00000037606 Osbpl5 ENSMUST00000137627 - NO_TRANSLATION retained_intron ENSMUSG00000037606 Osbpl5 ENSMUST00000020411 ENSMUSP00000020411 TRANSLATION protein_coding - CCDS40200.1 1 898.0 0.0 7.622 0.8 340.3 1.0 -4,-1 0.5639 17 12.0 MINOR ENSMUSG00000037606 Osbpl5 ENSMUST00000119499 ENSMUSP00000113362 TRANSLATION protein_coding - CCDS57598.1 1 874.0 0.0 7.622 4.2 340.3 1.0 -4,-7 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000047085 Lrrc4b ENSMUST00000127790 ENSMUSP00000123389 TRANSLATION protein_coding stop - 5 218.0 0.0 1.8 0.0 127.8 0.0 0,-3 0.0 6 -2.0 MINOR ENSMUSG00000047085 Lrrc4b ENSMUST00000156093 ENSMUSP00000119374 TRANSLATION protein_coding stop - 2 234.0 0.0 2.3 0.0 129.5 0.0 0,-3 0.0 6 -2.0 MINOR ENSMUSG00000047085 Lrrc4b ENSMUST00000058667 ENSMUSP00000053123 TRANSLATION protein_coding - CCDS21206.1 1 709.0 2.0 3.1 4.7 228.1 0.0 0,-3 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000095962 Vmn1r137 ENSMUST00000177884 ENSMUSP00000135997 TRANSLATION protein_coding - CCDS52104.1 - 307.0 0.0 0.0 0.4 55.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094602 Vmn1r169 ENSMUST00000170290 ENSMUSP00000126133 TRANSLATION protein_coding - CCDS52132.1 - 304.0 0.0 0.0 0.4 71.2 4.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094602 Vmn1r169 ENSMUST00000227932 ENSMUSP00000153880 TRANSLATION protein_coding - CCDS52132.1 - 304.0 0.0 0.0 0.4 71.2 4.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094602 Vmn1r169 ENSMUST00000226669 ENSMUSP00000153881 TRANSLATION protein_coding - CCDS52132.1 - 304.0 0.0 0.0 0.4 71.2 4.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094602 Vmn1r169 ENSMUST00000228832 ENSMUSP00000154343 TRANSLATION protein_coding - CCDS52132.1 - 304.0 0.0 0.0 0.4 71.2 4.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094602 Vmn1r169 ENSMUST00000227547 ENSMUSP00000154034 TRANSLATION protein_coding - CCDS52132.1 - 304.0 0.0 0.0 0.4 71.2 4.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000058244 Or5p78 ENSMUST00000077343 ENSMUSP00000076566 TRANSLATION protein_coding - CCDS21720.1 - 314.0 0.0 1.0 11.4 181.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058244 Or5p78 ENSMUST00000209296 ENSMUSP00000147623 TRANSLATION protein_coding - CCDS21720.1 3 314.0 0.0 1.0 11.4 181.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045693 Nlrp4e ENSMUST00000133392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045693 Nlrp4e ENSMUST00000076470 ENSMUSP00000075794 TRANSLATION protein_coding - CCDS20928.1 1 978.0 7.0 7.1 0.4 278.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000059031 Or5p58 ENSMUST00000217304 ENSMUSP00000150755 TRANSLATION protein_coding - CCDS21704.1 5 323.0 0.0 1.0 0.1 174.7 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059031 Or5p58 ENSMUST00000081184 ENSMUSP00000079948 TRANSLATION protein_coding - CCDS21704.1 - 323.0 0.0 1.0 0.1 174.7 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030785 Cox6a2 ENSMUST00000033049 ENSMUSP00000033049 TRANSLATION protein_coding - CCDS21891.1 1 97.0 0.0 2.35 14.4 0.0 0.0 -2,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000073944 Or52z14 ENSMUST00000215732 ENSMUSP00000150630 TRANSLATION protein_coding - CCDS21581.1 5 320.0 0.0 1.0 4.9 350.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073944 Or52z14 ENSMUST00000098196 ENSMUSP00000095798 TRANSLATION protein_coding - CCDS21581.1 - 320.0 0.0 1.0 4.9 350.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073961 Or52r1b ENSMUST00000098212 ENSMUSP00000095813 TRANSLATION protein_coding - CCDS21558.1 - 319.0 0.0 1.0 1.0 363.7 9.0 -4,-7 0.5669 - 12.0 MINOR ENSMUSG00000073961 Or52r1b ENSMUST00000211036 ENSMUSP00000147453 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 14.5 363.7 9.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073961 Or52r1b ENSMUST00000210119 ENSMUSP00000147470 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 14.5 363.7 9.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073961 Or52r1b ENSMUST00000214021 ENSMUSP00000149453 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 14.5 363.7 9.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000054612 Mgmt ENSMUST00000081510 ENSMUSP00000080224 TRANSLATION protein_coding - CCDS21945.1 1 211.0 4.0 2.8 5.0 176.4 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000030484 Lypd5 ENSMUST00000032683 ENSMUSP00000032683 TRANSLATION protein_coding - CCDS39830.1 1 256.0 0.0 4.0 2.7 62.9 0.0 4,-1 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000042492 Tbc1d10b ENSMUST00000120705 ENSMUSP00000113307 TRANSLATION protein_coding - CCDS40139.2 1 798.0 0.0 6.35 0.1 178.9 0.0 -4,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000042492 Tbc1d10b ENSMUST00000138219 - NO_TRANSLATION retained_intron ENSMUSG00000042492 Tbc1d10b ENSMUST00000205620 ENSMUSP00000146053 TRANSLATION protein_coding start - 5 189.0 0.0 3.75 0.0 98.3 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000042492 Tbc1d10b ENSMUST00000137987 - NO_TRANSLATION retained_intron ENSMUSG00000042492 Tbc1d10b ENSMUST00000147520 - NO_TRANSLATION retained_intron ENSMUSG00000042492 Tbc1d10b ENSMUST00000124240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042492 Tbc1d10b ENSMUST00000153857 - NO_TRANSLATION retained_intron ENSMUSG00000042492 Tbc1d10b ENSMUST00000133666 - NO_TRANSLATION retained_intron ENSMUSG00000030921 Trim30a ENSMUST00000076922 ENSMUSP00000076189 TRANSLATION protein_coding - CCDS40068.1 1 496.0 16.0 3.659 0.4 106.0 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000030921 Trim30a ENSMUST00000142124 - NO_TRANSLATION retained_intron ENSMUSG00000030921 Trim30a ENSMUST00000125762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066239 Or10a3n ENSMUST00000202706 ENSMUSP00000144271 TRANSLATION protein_coding - CCDS80777.1 - 314.0 0.0 1.0 10.9 200.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066239 Or10a3n ENSMUST00000084752 ENSMUSP00000081804 TRANSLATION protein_coding start - - 319.0 0.0 1.0 1.3 200.4 6.0 -4,-7 0.3036 - -2.0 MINOR ENSMUSG00000042423 Fbrs ENSMUST00000205696 - NO_TRANSLATION retained_intron ENSMUSG00000042423 Fbrs ENSMUST00000206484 ENSMUSP00000145748 TRANSLATION protein_coding start/stop - 5 364.0 0.0 0.5 0.0 153.0 0.0 -4,-6 0.0595 2 -2.0 MINOR ENSMUSG00000042423 Fbrs ENSMUST00000205651 - NO_TRANSLATION retained_intron ENSMUSG00000042423 Fbrs ENSMUST00000206980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042423 Fbrs ENSMUST00000205967 - NO_TRANSLATION retained_intron ENSMUSG00000042423 Fbrs ENSMUST00000205803 ENSMUSP00000145666 TRANSLATION protein_coding start/stop - 5 254.0 0.0 0.5 0.0 237.7 0.0 -4,-6 0.0995 1 -2.0 MINOR ENSMUSG00000042423 Fbrs ENSMUST00000205432 ENSMUSP00000145783 TRANSLATION protein_coding - - 5 980.0 0.0 0.5 0.0 237.7 0.0 -4,-6 0.3682 4 8.0 PRINCIPAL:3 ENSMUSG00000042423 Fbrs ENSMUST00000206394 ENSMUSP00000146139 TRANSLATION protein_coding - - 5 378.0 0.0 0.5 0.0 211.9 0.0 -4,-7 0.5046 2 8.0 MINOR ENSMUSG00000042423 Fbrs ENSMUST00000048896 ENSMUSP00000043682 TRANSLATION protein_coding - CCDS52408.1 5 466.0 0.0 0.5 0.0 237.7 0.0 -4,-5 0.4492 3 8.0 ALTERNATIVE:2 ENSMUSG00000054005 Mill1 ENSMUST00000066780 ENSMUSP00000069083 TRANSLATION protein_coding - CCDS20868.1 1 395.0 0.0 2.7 0.0 136.7 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033961 Zfp446 ENSMUST00000108535 ENSMUSP00000104175 TRANSLATION protein_coding - CCDS52022.1 1 256.0 0.0 1.0 0.0 163.3 0.0 -4,-7 0.0636 1 5.284 MINOR ENSMUSG00000033961 Zfp446 ENSMUST00000128427 - NO_TRANSLATION retained_intron ENSMUSG00000033961 Zfp446 ENSMUST00000108536 ENSMUSP00000104176 TRANSLATION protein_coding - - 2 423.0 12.0 1.4 0.4 181.4 0.0 -4,-7 0.0912 1 14.0 ALTERNATIVE:2 ENSMUSG00000033961 Zfp446 ENSMUST00000108537 ENSMUSP00000104177 TRANSLATION protein_coding - CCDS52023.1 1 348.0 12.0 1.4 0.0 181.4 0.0 -4,-7 0.3186 - 14.0 ALTERNATIVE:2 ENSMUSG00000033961 Zfp446 ENSMUST00000147996 - NO_TRANSLATION retained_intron ENSMUSG00000033961 Zfp446 ENSMUST00000045810 ENSMUSP00000039073 TRANSLATION protein_coding - CCDS20820.1 1 523.0 12.0 1.4 0.0 181.4 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000064023 Klk8 ENSMUST00000205537 ENSMUSP00000145580 TRANSLATION protein_coding stop - 2 228.0 13.0 3.5 0.0 215.9 0.0 3,-2 0.0073 3 -2.0 MINOR ENSMUSG00000064023 Klk8 ENSMUST00000206465 - NO_TRANSLATION retained_intron ENSMUSG00000064023 Klk8 ENSMUST00000085461 ENSMUSP00000082588 TRANSLATION protein_coding - CCDS21182.1 1 260.0 13.0 4.75 8.0 248.4 0.0 3,-2 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000025498 Irf7 ENSMUST00000210506 - NO_TRANSLATION retained_intron ENSMUSG00000025498 Irf7 ENSMUST00000148414 - NO_TRANSLATION retained_intron ENSMUSG00000025498 Irf7 ENSMUST00000106023 ENSMUSP00000101644 TRANSLATION protein_coding - CCDS57594.1 1 425.0 0.0 4.0 0.4 289.5 0.0 -4,-5 0.3127 2 8.0 ALTERNATIVE:2 ENSMUSG00000025498 Irf7 ENSMUST00000123525 ENSMUSP00000121026 TRANSLATION protein_coding start/stop - 5 251.0 0.0 2.93 0.0 204.8 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000025498 Irf7 ENSMUST00000156938 - NO_TRANSLATION retained_intron ENSMUSG00000025498 Irf7 ENSMUST00000146373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025498 Irf7 ENSMUST00000127223 - NO_TRANSLATION retained_intron ENSMUSG00000025498 Irf7 ENSMUST00000127161 - NO_TRANSLATION retained_intron ENSMUSG00000025498 Irf7 ENSMUST00000155744 - NO_TRANSLATION retained_intron ENSMUSG00000025498 Irf7 ENSMUST00000026571 ENSMUSP00000026571 TRANSLATION protein_coding - CCDS22005.1 1 457.0 0.0 4.0 0.4 289.5 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000025498 Irf7 ENSMUST00000131399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025498 Irf7 ENSMUST00000209899 ENSMUSP00000147529 TRANSLATION nonsense_mediated_decay - - 1 237.0 0.0 2.0 0.0 128.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025498 Irf7 ENSMUST00000097952 ENSMUSP00000095565 TRANSLATION protein_coding - CCDS57595.1 1 426.0 0.0 4.0 0.0 289.5 0.0 -4,-5 0.3127 3 8.0 ALTERNATIVE:2 ENSMUSG00000030707 Coro1a ENSMUST00000173116 ENSMUSP00000133555 TRANSLATION protein_coding stop - 3 113.0 0.0 2.33 0.0 137.9 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000030707 Coro1a ENSMUST00000135087 ENSMUSP00000115960 TRANSLATION protein_coding stop - 2 116.0 0.0 2.33 0.0 137.9 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000030707 Coro1a ENSMUST00000173108 ENSMUSP00000134123 TRANSLATION protein_coding - - 5 389.0 0.0 9.08 0.0 266.5 0.0 -4,-2 0.0024 15 5.07 MINOR ENSMUSG00000030707 Coro1a ENSMUST00000131415 ENSMUSP00000117931 TRANSLATION protein_coding stop - 3 233.0 0.0 5.08 0.0 176.5 0.0 -4,-2 0.0 7 -2.0 MINOR ENSMUSG00000030707 Coro1a ENSMUST00000123511 - NO_TRANSLATION retained_intron ENSMUSG00000030707 Coro1a ENSMUST00000174579 - NO_TRANSLATION retained_intron ENSMUSG00000030707 Coro1a ENSMUST00000133718 - NO_TRANSLATION retained_intron ENSMUSG00000030707 Coro1a ENSMUST00000205515 ENSMUSP00000146177 TRANSLATION protein_coding stop - 5 246.0 0.0 5.58 0.0 143.2 0.0 -4,-1 0.0 9 -2.0 MINOR ENSMUSG00000030707 Coro1a ENSMUST00000126193 - NO_TRANSLATION retained_intron ENSMUSG00000030707 Coro1a ENSMUST00000106364 ENSMUSP00000101972 TRANSLATION protein_coding - CCDS21840.1 1 461.0 0.0 10.08 16.5 348.7 0.0 -4,-2 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000030707 Coro1a ENSMUST00000032949 ENSMUSP00000032949 TRANSLATION protein_coding - CCDS21840.1 1 461.0 0.0 10.08 16.5 348.7 0.0 -4,-2 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000030707 Coro1a ENSMUST00000140896 - NO_TRANSLATION retained_intron ENSMUSG00000031098 Syt8 ENSMUST00000150192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031098 Syt8 ENSMUST00000105976 ENSMUSP00000101596 TRANSLATION protein_coding - CCDS72071.1 1 389.0 2.0 4.4 0.4 107.0 3.0 -4,-7 1.0 1 10.0 PRINCIPAL:2 ENSMUSG00000031098 Syt8 ENSMUST00000128481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031098 Syt8 ENSMUST00000122393 ENSMUSP00000112689 TRANSLATION protein_coding - CCDS72070.1 1 395.0 2.0 4.4 0.0 107.0 3.0 -4,-2 0.5328 1 10.0 ALTERNATIVE:2 ENSMUSG00000031098 Syt8 ENSMUST00000105977 ENSMUSP00000101597 TRANSLATION protein_coding stop - 5 89.0 0.0 0.0 0.0 0.0 3.0 -4,-7 0.0003 - -2.0 MINOR ENSMUSG00000031098 Syt8 ENSMUST00000118276 ENSMUSP00000113545 TRANSLATION protein_coding - CCDS22030.1 1 395.0 2.0 4.4 0.4 107.0 3.0 -4,-7 0.5647 1 10.0 ALTERNATIVE:2 ENSMUSG00000031098 Syt8 ENSMUST00000124963 - NO_TRANSLATION retained_intron ENSMUSG00000031098 Syt8 ENSMUST00000097939 ENSMUSP00000095552 TRANSLATION protein_coding - CCDS72071.1 1 389.0 2.0 4.4 0.4 107.0 3.0 -4,-7 1.0 1 10.0 PRINCIPAL:2 ENSMUSG00000031098 Syt8 ENSMUST00000145964 - NO_TRANSLATION retained_intron ENSMUSG00000031098 Syt8 ENSMUST00000210746 ENSMUSP00000147572 TRANSLATION nonsense_mediated_decay start - 5 57.0 1.0 0.8 0.0 29.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031098 Syt8 ENSMUST00000148896 - NO_TRANSLATION retained_intron ENSMUSG00000030753 Thap12 ENSMUST00000146473 - NO_TRANSLATION retained_intron ENSMUSG00000030753 Thap12 ENSMUST00000033009 ENSMUSP00000033009 TRANSLATION protein_coding - CCDS21474.1 1 758.0 5.0 1.438 6.5 112.2 0.0 -4,-7 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000030753 Thap12 ENSMUST00000126356 ENSMUSP00000118403 TRANSLATION nonsense_mediated_decay - - 3 79.0 5.0 0.838 0.0 54.1 0.0 -4,-2 0.0009 1 -2.0 MINOR ENSMUSG00000030753 Thap12 ENSMUST00000153566 ENSMUSP00000118736 TRANSLATION nonsense_mediated_decay - - 3 120.0 5.0 1.438 0.0 66.5 0.0 -4,-7 0.029 2 -2.0 MINOR ENSMUSG00000049797 Or51a10 ENSMUST00000214299 ENSMUSP00000148961 TRANSLATION protein_coding - CCDS21604.1 5 314.0 0.0 1.0 11.5 394.5 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057176 Cfap119 ENSMUST00000206891 - NO_TRANSLATION retained_intron ENSMUSG00000057176 Cfap119 ENSMUST00000072155 ENSMUSP00000072019 TRANSLATION protein_coding - CCDS21870.1 1 333.0 0.0 0.1925 8.4 116.3 0.0 -4,-5 1.0 1 13.2 PRINCIPAL:1 ENSMUSG00000057176 Cfap119 ENSMUST00000206220 - NO_TRANSLATION retained_intron ENSMUSG00000057176 Cfap119 ENSMUST00000205850 - NO_TRANSLATION retained_intron ENSMUSG00000057176 Cfap119 ENSMUST00000205839 ENSMUSP00000145691 TRANSLATION protein_coding start - 3 156.0 0.0 0.275 0.0 33.8 0.0 -4,-5 0.0196 1 -2.0 MINOR ENSMUSG00000013083 2200002J24Rik ENSMUST00000207260 ENSMUSP00000159562 TRANSLATION protein_coding - CCDS21107.1 3 110.0 0.0 0.6 0.0 56.3 2.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000013083 2200002J24Rik ENSMUST00000207565 ENSMUSP00000159561 TRANSLATION protein_coding - CCDS21107.1 1 110.0 0.0 0.6 0.0 56.3 2.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000013083 2200002J24Rik ENSMUST00000207437 ENSMUSP00000159563 TRANSLATION protein_coding - CCDS21107.1 1 110.0 0.0 0.6 0.0 56.3 2.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000090362 Vmn2r79 ENSMUST00000233648 ENSMUSP00000156476 TRANSLATION protein_coding - - - 557.0 2.0 1.65 0.0 146.3 0.0 0,-4 0.0 - 6.804 MINOR ENSMUSG00000090362 Vmn2r79 ENSMUST00000233714 ENSMUSP00000156924 TRANSLATION protein_coding - - - 563.0 2.0 1.848 0.0 154.9 0.0 0,-4 0.0004 - 7.332 MINOR ENSMUSG00000090362 Vmn2r79 ENSMUST00000232908 ENSMUSP00000156544 TRANSLATION nonsense_mediated_decay - - - 179.0 0.0 0.25 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000090362 Vmn2r79 ENSMUST00000233730 ENSMUSP00000156561 TRANSLATION protein_coding - - - 845.0 4.0 2.05 0.0 361.6 8.0 0,-4 0.1238 - 11.472 ALTERNATIVE:2 ENSMUSG00000090362 Vmn2r79 ENSMUST00000233048 - NO_TRANSLATION retained_intron ENSMUSG00000090362 Vmn2r79 ENSMUST00000164462 ENSMUSP00000132478 TRANSLATION protein_coding - CCDS52303.1 5 851.0 4.0 2.248 0.3 370.2 8.0 0,-4 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000058975 Kcnc1 ENSMUST00000025202 ENSMUSP00000025202 TRANSLATION protein_coding - CCDS21278.1 1 511.0 0.0 1.278 6.0 248.7 3.0 -4,-5 0.5412 3 12.948 MINOR ENSMUSG00000058975 Kcnc1 ENSMUST00000160234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058975 Kcnc1 ENSMUST00000160433 ENSMUSP00000124938 TRANSLATION protein_coding - CCDS52252.1 1 585.0 0.0 1.08 22.1 248.7 3.0 -4,-5 1.0 4 15.07 PRINCIPAL:1 ENSMUSG00000040331 Nsmce4a ENSMUST00000161414 - NO_TRANSLATION retained_intron ENSMUSG00000040331 Nsmce4a ENSMUST00000207276 - NO_TRANSLATION retained_intron ENSMUSG00000040331 Nsmce4a ENSMUST00000161470 - NO_TRANSLATION retained_intron ENSMUSG00000040331 Nsmce4a ENSMUST00000162510 - NO_TRANSLATION retained_intron ENSMUSG00000040331 Nsmce4a ENSMUST00000159694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040331 Nsmce4a ENSMUST00000161076 ENSMUSP00000124794 TRANSLATION nonsense_mediated_decay start - 3 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040331 Nsmce4a ENSMUST00000160289 ENSMUSP00000125300 TRANSLATION protein_coding - CCDS52415.1 1 381.0 0.0 0.0 7.7 143.2 0.0 -4,-7 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000030559 Rab38 ENSMUST00000208478 ENSMUSP00000146448 TRANSLATION protein_coding - - 3 121.0 11.0 2.0 0.0 112.4 0.0 -4,-7 0.0 2 6.798 MINOR ENSMUSG00000030559 Rab38 ENSMUST00000107256 ENSMUSP00000102877 TRANSLATION protein_coding - CCDS21439.1 1 211.0 20.0 3.6 26.8 145.8 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000009471 Myod1 ENSMUST00000072514 ENSMUSP00000072330 TRANSLATION protein_coding - CCDS21277.1 1 318.0 0.0 0.6 11.0 241.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048897 Zfp710 ENSMUST00000049680 ENSMUSP00000050577 TRANSLATION protein_coding - CCDS52280.1 1 666.0 43.0 2.9 8.3 217.0 0.0 -4,-5 1.0 - 20.4 PRINCIPAL:1 ENSMUSG00000048897 Zfp710 ENSMUST00000166250 ENSMUSP00000129357 TRANSLATION protein_coding - CCDS52279.1 1 645.0 43.0 3.2 0.0 217.0 0.0 -4,-5 0.1741 - 18.0 MINOR ENSMUSG00000048897 Zfp710 ENSMUST00000206039 ENSMUSP00000146148 TRANSLATION protein_coding - - 1 665.0 43.0 2.96 0.0 217.0 0.0 -4,-5 0.3368 - 17.52 MINOR ENSMUSG00000048897 Zfp710 ENSMUST00000164056 ENSMUSP00000132361 TRANSLATION protein_coding - CCDS52280.1 1 666.0 43.0 2.9 8.3 217.0 0.0 -4,-5 1.0 - 20.4 PRINCIPAL:1 ENSMUSG00000048897 Zfp710 ENSMUST00000206104 ENSMUSP00000145836 TRANSLATION protein_coding stop - 2 31.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030560 Ctsc ENSMUST00000128791 ENSMUSP00000119503 TRANSLATION protein_coding stop - 5 254.0 1.0 4.32 0.0 156.6 0.0 3,-2 0.0008 2 -2.0 MINOR ENSMUSG00000030560 Ctsc ENSMUST00000152834 - NO_TRANSLATION retained_intron ENSMUSG00000030560 Ctsc ENSMUST00000131108 ENSMUSP00000147006 TRANSLATION protein_coding - CCDS85332.1 1 137.0 0.0 2.0 7.5 100.7 0.0 3,-2 0.586 - 2.0 MINOR ENSMUSG00000030560 Ctsc ENSMUST00000032779 ENSMUSP00000032779 TRANSLATION protein_coding - CCDS21438.1 1 462.0 4.0 6.32 6.4 362.8 0.0 3,-2 1.0 8 17.662 PRINCIPAL:1 ENSMUSG00000030560 Ctsc ENSMUST00000139159 - NO_TRANSLATION retained_intron ENSMUSG00000096871 Gm10665 ENSMUST00000098720 ENSMUSP00000096316 TRANSLATION protein_coding - CCDS52114.1 - 321.0 0.0 0.0 0.0 59.7 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033510 Otud7a ENSMUST00000177511 ENSMUSP00000134821 TRANSLATION protein_coding start - 3 89.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033510 Otud7a ENSMUST00000058476 ENSMUSP00000057282 TRANSLATION protein_coding - CCDS21330.1 1 926.0 0.0 7.9 0.0 109.8 0.0 -4,-7 1.0 11 11.34 PRINCIPAL:1 ENSMUSG00000033510 Otud7a ENSMUST00000176734 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033510 Otud7a ENSMUST00000177534 ENSMUSP00000135559 TRANSLATION protein_coding stop - 5 685.0 0.0 8.23 0.0 85.7 0.0 -4,-7 0.0489 1 -2.0 MINOR ENSMUSG00000041583 Obox6 ENSMUST00000108513 ENSMUSP00000104153 TRANSLATION protein_coding - CCDS20839.2 3 347.0 0.0 0.4 0.0 63.4 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048920 Fkrp ENSMUST00000205677 - NO_TRANSLATION retained_intron ENSMUSG00000048920 Fkrp ENSMUST00000205368 - NO_TRANSLATION retained_intron ENSMUSG00000048920 Fkrp ENSMUST00000206259 ENSMUSP00000145701 TRANSLATION protein_coding stop - 2 108.0 0.0 1.0 0.0 0.0 2.0 0,-3 0.0291 - -2.0 MINOR ENSMUSG00000048920 Fkrp ENSMUST00000061390 ENSMUSP00000059091 TRANSLATION protein_coding - CCDS20853.1 1 494.0 0.0 2.0 11.8 0.0 2.0 0,-3 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000000948 Gm38393 ENSMUST00000189432 ENSMUSP00000139935 TRANSLATION nonsense_mediated_decay,RT - - 5 38.0 0.0 0.0 0.0 74.0 0.0 -4,-2 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000000948 Gm38393 ENSMUST00000191491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000948 Gm38393 ENSMUST00000191456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000948 Gm38393 ENSMUST00000179360 ENSMUSP00000136053 TRANSLATION nonsense_mediated_decay,RT - CCDS57553.1 5 71.0 0.0 0.0 9.1 156.1 0.0 -4,-2 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000030816 Rnf40 ENSMUST00000206699 - NO_TRANSLATION retained_intron ENSMUSG00000030816 Rnf40 ENSMUST00000206914 ENSMUSP00000146004 TRANSLATION protein_coding - - 5 901.0 7.0 1.5 1.0 28.0 0.0 -4,-5 0.2331 18 18.0 MINOR ENSMUSG00000030816 Rnf40 ENSMUST00000205694 ENSMUSP00000146310 TRANSLATION protein_coding - CCDS21871.1 1 1001.0 7.0 1.5 11.0 28.0 0.0 -4,-5 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000030816 Rnf40 ENSMUST00000033088 ENSMUSP00000033088 TRANSLATION protein_coding - - 5 961.0 7.0 1.5 0.0 28.0 0.0 -4,-5 0.1216 20 18.0 MINOR ENSMUSG00000030816 Rnf40 ENSMUST00000206724 - NO_TRANSLATION retained_intron ENSMUSG00000030816 Rnf40 ENSMUST00000206443 - NO_TRANSLATION retained_intron ENSMUSG00000030499 Kctd15 ENSMUST00000205843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030499 Kctd15 ENSMUST00000108070 ENSMUSP00000103705 TRANSLATION protein_coding - CCDS21141.1 1 283.0 0.0 4.08 11.0 59.9 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000030499 Kctd15 ENSMUST00000127425 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030499 Kctd15 ENSMUST00000206501 ENSMUSP00000145815 TRANSLATION protein_coding stop - 3 49.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030499 Kctd15 ENSMUST00000032709 ENSMUSP00000032709 TRANSLATION protein_coding - CCDS21141.1 1 283.0 0.0 4.08 11.0 59.9 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000030499 Kctd15 ENSMUST00000155093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030499 Kctd15 ENSMUST00000108069 ENSMUSP00000103704 TRANSLATION protein_coding - CCDS21141.1 5 283.0 0.0 4.08 11.0 59.9 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000030499 Kctd15 ENSMUST00000205419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095273 Vmn1r142 ENSMUST00000169697 ENSMUSP00000126410 TRANSLATION protein_coding - CCDS52109.1 - 305.0 0.0 0.0 0.4 52.8 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000118462 Lhb ENSMUST00000238437 ENSMUSP00000158793 TRANSLATION nonsense_mediated_decay start - - 205.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0292 3 -2.0 MINOR ENSMUSG00000118462 Lhb ENSMUST00000238591 ENSMUSP00000158785 TRANSLATION nonsense_mediated_decay - - - 310.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.4714 3 -2.0 MINOR ENSMUSG00000118462 Lhb ENSMUST00000238638 ENSMUSP00000158821 TRANSLATION protein_coding - - - 310.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.4714 3 0.0 PRINCIPAL:1 ENSMUSG00000118462 Lhb ENSMUST00000238581 - NO_TRANSLATION retained_intron ENSMUSG00000030898 Cckbr ENSMUST00000181339 ENSMUSP00000138052 TRANSLATION protein_coding - - 1 314.0 0.0 2.22 0.0 146.3 5.0 -4,-1 0.0353 - 9.048 MINOR ENSMUSG00000030898 Cckbr ENSMUST00000033189 ENSMUSP00000033189 TRANSLATION protein_coding - CCDS21651.1 1 453.0 0.0 2.1 8.6 195.5 7.0 -4,-1 1.0 1 14.676 PRINCIPAL:1 ENSMUSG00000030800 Prss8 ENSMUST00000206124 ENSMUSP00000145904 TRANSLATION protein_coding - CCDS40147.1 1 339.0 5.0 4.9389 0.1 247.0 0.0 4,-1 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000030800 Prss8 ENSMUST00000206568 ENSMUSP00000146313 TRANSLATION nonsense_mediated_decay - - 3 62.0 0.0 0.8089 0.0 0.0 0.0 4,-1 0.0036 - -2.0 MINOR ENSMUSG00000030800 Prss8 ENSMUST00000032988 ENSMUSP00000032988 TRANSLATION protein_coding - CCDS40147.1 1 339.0 5.0 4.9389 0.1 247.0 0.0 4,-1 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000096593 Vmn2r54 ENSMUST00000086210 ENSMUSP00000083386 TRANSLATION protein_coding - CCDS52019.1 5 806.0 0.0 2.966 0.0 458.1 7.0 -4,-6 0.3868 - 7.682 ALTERNATIVE:2 ENSMUSG00000096593 Vmn2r54 ENSMUST00000240710 ENSMUSP00000159503 TRANSLATION protein_coding - - - 869.0 0.0 3.06 0.0 458.1 7.0 2,-2 0.4152 - 7.868 ALTERNATIVE:2 ENSMUSG00000096593 Vmn2r54 ENSMUST00000233287 ENSMUSP00000156708 TRANSLATION protein_coding - - - 878.0 0.0 3.126 0.0 458.1 7.0 2,-2 0.9274 - 8.0 PRINCIPAL:2 ENSMUSG00000048012 Zfp473 ENSMUST00000140599 ENSMUSP00000127738 TRANSLATION protein_coding stop - 2 149.0 0.0 0.0 0.0 30.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048012 Zfp473 ENSMUST00000126366 ENSMUSP00000127101 TRANSLATION protein_coding stop - 3 99.0 0.0 0.0 0.0 30.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048012 Zfp473 ENSMUST00000120798 ENSMUSP00000113789 TRANSLATION protein_coding - CCDS71952.1 1 891.0 73.0 0.6 0.0 286.1 0.0 -4,-5 0.9946 - 14.0 ALTERNATIVE:2 ENSMUSG00000048012 Zfp473 ENSMUST00000118162 ENSMUSP00000113316 TRANSLATION protein_coding - CCDS71952.1 1 891.0 73.0 0.6 0.0 286.1 0.0 -4,-5 0.9946 - 14.0 ALTERNATIVE:2 ENSMUSG00000048012 Zfp473 ENSMUST00000120074 ENSMUSP00000113774 TRANSLATION protein_coding - CCDS21213.1 1 892.0 73.0 0.6 0.0 286.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000048012 Zfp473 ENSMUST00000149011 ENSMUSP00000130689 TRANSLATION protein_coding - - 1 103.0 0.0 0.0 0.0 30.3 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000048012 Zfp473 ENSMUST00000060270 ENSMUSP00000051069 TRANSLATION protein_coding - CCDS21213.1 1 892.0 73.0 0.6 0.0 286.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000038611 Phrf1 ENSMUST00000155123 ENSMUSP00000120759 TRANSLATION nonsense_mediated_decay - - 5 214.0 11.0 1.475 0.0 38.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038611 Phrf1 ENSMUST00000144250 - NO_TRANSLATION retained_intron ENSMUSG00000038611 Phrf1 ENSMUST00000122868 - NO_TRANSLATION retained_intron ENSMUSG00000038611 Phrf1 ENSMUST00000106027 ENSMUSP00000101648 TRANSLATION protein_coding - CCDS52441.1 5 1682.0 15.0 4.355 0.0 89.2 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000038611 Phrf1 ENSMUST00000142572 ENSMUSP00000117393 TRANSLATION protein_coding start - 1 773.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0075 6 -2.0 MINOR ENSMUSG00000038611 Phrf1 ENSMUST00000130687 ENSMUSP00000123351 TRANSLATION protein_coding start - 1 331.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038611 Phrf1 ENSMUST00000122143 ENSMUSP00000113195 TRANSLATION protein_coding - - 1 1523.0 8.0 3.678 0.0 51.2 0.0 -4,-5 0.0348 11 9.42 MINOR ENSMUSG00000038611 Phrf1 ENSMUST00000132540 ENSMUSP00000147372 TRANSLATION nonsense_mediated_decay start - 3 127.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038611 Phrf1 ENSMUST00000134057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038611 Phrf1 ENSMUST00000211144 - NO_TRANSLATION retained_intron ENSMUSG00000081945 Or52d13 ENSMUST00000214347 ENSMUSP00000154348 TRANSLATION protein_coding - - 5 327.0 0.0 1.08 0.0 339.9 7.0 -4,-5 0.8329 - 12.0 PRINCIPAL:1 ENSMUSG00000081945 Or52d13 ENSMUST00000119283 ENSMUSP00000153885 TRANSLATION protein_coding start/stop - - 305.0 0.0 1.0 0.0 338.5 7.0 -4,-5 0.0851 - -2.0 MINOR ENSMUSG00000051041 Olfml1 ENSMUST00000239087 ENSMUSP00000159031 TRANSLATION protein_coding - - - 232.0 0.0 0.4 0.0 35.2 0.0 3,-1 0.0808 - 7.896 MINOR ENSMUSG00000051041 Olfml1 ENSMUST00000120990 ENSMUSP00000114029 TRANSLATION protein_coding - CCDS52354.1 1 233.0 0.0 0.5485 0.0 60.0 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044702 Palb2 ENSMUST00000142952 ENSMUSP00000123041 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044702 Palb2 ENSMUST00000063587 ENSMUSP00000063514 TRANSLATION protein_coding - CCDS80796.1 1 384.0 0.0 6.33 1.6 600.1 0.0 -4,-5 0.3714 - 7.002 ALTERNATIVE:2 ENSMUSG00000044702 Palb2 ENSMUST00000131657 ENSMUSP00000118059 TRANSLATION nonsense_mediated_decay start - 1 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0074 - -2.0 MINOR ENSMUSG00000044702 Palb2 ENSMUST00000098068 ENSMUSP00000095675 TRANSLATION protein_coding - CCDS40117.1 1 1104.0 0.0 7.33 0.1 598.1 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000044702 Palb2 ENSMUST00000106468 ENSMUSP00000102076 TRANSLATION protein_coding - CCDS80797.1 1 1030.0 0.0 6.33 0.0 381.1 0.0 -4,-5 0.0757 - 4.002 MINOR ENSMUSG00000044702 Palb2 ENSMUST00000154508 - NO_TRANSLATION retained_intron ENSMUSG00000044702 Palb2 ENSMUST00000205352 - NO_TRANSLATION retained_intron ENSMUSG00000044702 Palb2 ENSMUST00000106469 ENSMUSP00000102077 TRANSLATION protein_coding - CCDS72035.1 1 741.0 0.0 7.33 0.0 598.1 0.0 -4,-5 0.3662 - 8.0 ALTERNATIVE:2 ENSMUSG00000044702 Palb2 ENSMUST00000130149 - NO_TRANSLATION retained_intron ENSMUSG00000030674 Qprt ENSMUST00000032912 ENSMUSP00000032912 TRANSLATION protein_coding - CCDS40138.1 1 299.0 11.0 3.0 6.3 273.2 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000030674 Qprt ENSMUST00000129332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030674 Qprt ENSMUST00000142403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073951 Or52ab7 ENSMUST00000214765 ENSMUSP00000149199 TRANSLATION protein_coding - CCDS40054.1 5 319.0 0.0 1.0 0.3 297.9 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073951 Or52ab7 ENSMUST00000098202 ENSMUSP00000100474 TRANSLATION protein_coding - CCDS40054.1 - 319.0 0.0 1.0 0.3 297.9 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078616 Trim30c ENSMUST00000106828 ENSMUSP00000102441 TRANSLATION protein_coding - - 5 513.0 16.0 3.292 0.0 107.4 0.0 -4,-5 0.7642 - 18.0 PRINCIPAL:1 ENSMUSG00000030621 Me3 ENSMUST00000159167 - NO_TRANSLATION retained_intron ENSMUSG00000030621 Me3 ENSMUST00000032853 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030621 Me3 ENSMUST00000032856 ENSMUSP00000032856 TRANSLATION protein_coding - CCDS21443.1 1 604.0 20.0 13.48 10.6 612.2 0.0 -4,0 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000030621 Me3 ENSMUST00000159504 - NO_TRANSLATION retained_intron ENSMUSG00000030621 Me3 ENSMUST00000160995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030621 Me3 ENSMUST00000159491 ENSMUSP00000146505 TRANSLATION nonsense_mediated_decay start - 1 71.0 0.0 1.33 0.0 47.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030621 Me3 ENSMUST00000162145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031026 Trim66 ENSMUST00000033339 ENSMUSP00000033339 TRANSLATION protein_coding - CCDS40082.1 1 1242.0 12.0 6.55 5.9 116.8 0.0 -4,-5 1.0 8 14.666 MINOR ENSMUSG00000031026 Trim66 ENSMUST00000106739 ENSMUSP00000102350 TRANSLATION protein_coding - CCDS52359.1 1 1233.0 12.0 6.55 0.0 116.8 0.0 -4,-5 0.3764 8 12.666 MINOR ENSMUSG00000031026 Trim66 ENSMUST00000106741 ENSMUSP00000102352 TRANSLATION protein_coding - CCDS52360.1 1 1344.0 20.0 6.55 0.1 116.8 0.0 -4,-5 0.8008 8 18.0 PRINCIPAL:1 ENSMUSG00000031026 Trim66 ENSMUST00000137704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030378 Sult2a8 ENSMUST00000063509 ENSMUSP00000066897 TRANSLATION protein_coding - CCDS20833.1 1 282.0 19.0 6.5 3.6 240.8 0.0 -4,-5 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000030378 Sult2a8 ENSMUST00000210396 ENSMUSP00000148165 TRANSLATION protein_coding stop - 5 128.0 7.0 2.75 0.0 86.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000030378 Sult2a8 ENSMUST00000125941 ENSMUSP00000116469 TRANSLATION protein_coding stop - 5 189.0 9.0 4.5 0.0 154.4 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000030378 Sult2a8 ENSMUST00000168252 ENSMUSP00000128428 TRANSLATION protein_coding - CCDS20833.1 1 282.0 19.0 6.5 3.6 240.8 0.0 -4,-5 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000030378 Sult2a8 ENSMUST00000211800 ENSMUSP00000148036 TRANSLATION protein_coding stop - 5 128.0 7.0 2.75 0.0 86.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000030378 Sult2a8 ENSMUST00000210366 - NO_TRANSLATION retained_intron ENSMUSG00000030378 Sult2a8 ENSMUST00000209425 ENSMUSP00000147301 TRANSLATION nonsense_mediated_decay - - 1 157.0 8.0 3.5 0.0 111.8 0.0 -4,-5 0.0026 7 -2.0 MINOR ENSMUSG00000030378 Sult2a8 ENSMUST00000209972 ENSMUSP00000147983 TRANSLATION protein_coding stop - 3 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025473 Adam8 ENSMUST00000128332 - NO_TRANSLATION retained_intron ENSMUSG00000025473 Adam8 ENSMUST00000156647 - NO_TRANSLATION retained_intron ENSMUSG00000025473 Adam8 ENSMUST00000026546 ENSMUSP00000026546 TRANSLATION protein_coding - CCDS72064.1 1 825.0 25.0 8.1 0.1 453.4 1.0 3,-2 0.9048 5 13.604 ALTERNATIVE:2 ENSMUSG00000025473 Adam8 ENSMUST00000148670 ENSMUSP00000117858 TRANSLATION protein_coding stop - 1 744.0 25.0 8.298 0.0 457.1 1.0 3,-2 0.313 5 -2.0 MINOR ENSMUSG00000025473 Adam8 ENSMUST00000106069 ENSMUSP00000101684 TRANSLATION protein_coding - CCDS21959.1 1 826.0 25.0 8.1 0.1 453.4 1.0 3,-2 0.9116 5 13.604 PRINCIPAL:4 ENSMUSG00000025473 Adam8 ENSMUST00000132903 - NO_TRANSLATION retained_intron ENSMUSG00000025473 Adam8 ENSMUST00000173209 ENSMUSP00000133673 TRANSLATION nonsense_mediated_decay - - 5 64.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0021 - -2.0 MINOR ENSMUSG00000025473 Adam8 ENSMUST00000149915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044737 Klk14 ENSMUST00000056329 ENSMUSP00000056935 TRANSLATION protein_coding - CCDS21180.1 1 250.0 11.0 4.0 11.5 243.7 0.0 3,-2 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000073931 Or52d1 ENSMUST00000214291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073931 Or52d1 ENSMUST00000214099 ENSMUSP00000149102 TRANSLATION protein_coding - CCDS21608.1 5 312.0 0.0 1.0 0.3 363.8 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073931 Or52d1 ENSMUST00000098182 ENSMUSP00000095784 TRANSLATION protein_coding - CCDS21608.1 - 312.0 0.0 1.0 0.3 363.8 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060508 Nlrp9b ENSMUST00000137183 ENSMUSP00000115158 TRANSLATION protein_coding stop - 5 241.0 7.0 2.8 0.0 151.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060508 Nlrp9b ENSMUST00000207805 ENSMUSP00000146427 TRANSLATION protein_coding stop - 3 32.0 0.0 0.0 0.0 24.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060508 Nlrp9b ENSMUST00000073151 ENSMUSP00000072895 TRANSLATION protein_coding - CCDS20920.1 1 1003.0 8.0 7.217 0.1 181.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000060508 Nlrp9b ENSMUST00000117909 ENSMUSP00000113762 TRANSLATION protein_coding - - 1 501.0 7.0 6.372 0.0 139.2 0.0 -4,-5 0.0 - 13.038 MINOR ENSMUSG00000030613 Ccdc90b ENSMUST00000153776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030613 Ccdc90b ENSMUST00000085017 ENSMUSP00000082090 TRANSLATION protein_coding - CCDS52309.1 1 222.0 0.0 4.85 2.2 97.7 1.0 -4,0 0.063 9 4.314 MINOR ENSMUSG00000030613 Ccdc90b ENSMUST00000032842 ENSMUSP00000032842 TRANSLATION protein_coding - CCDS21449.1 1 256.0 0.0 5.85 12.5 199.8 1.0 -4,0 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000010751 Tnfrsf22 ENSMUST00000084396 ENSMUSP00000081432 TRANSLATION protein_coding - CCDS22043.1 2 180.0 0.0 3.55 0.0 83.3 0.0 1,-3 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000010751 Tnfrsf22 ENSMUST00000171066 ENSMUSP00000126384 TRANSLATION protein_coding - - - 196.0 4.0 0.0 0.0 30.5 0.0 -4,-7 0.0019 - 4.0 MINOR ENSMUSG00000010751 Tnfrsf22 ENSMUST00000146692 ENSMUSP00000119297 TRANSLATION protein_coding - CCDS22043.1 1 180.0 0.0 3.55 0.0 83.3 0.0 1,-3 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000010751 Tnfrsf22 ENSMUST00000075588 ENSMUSP00000075018 TRANSLATION protein_coding - CCDS80846.1 1 198.0 0.0 3.55 0.0 83.3 0.0 1,-3 0.3418 2 8.0 ALTERNATIVE:2 ENSMUSG00000025491 Ifitm1 ENSMUST00000026564 ENSMUSP00000026564 TRANSLATION protein_coding - CCDS21995.1 1 106.0 0.0 1.0 0.1 97.2 2.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000025491 Ifitm1 ENSMUST00000106042 ENSMUSP00000101657 TRANSLATION protein_coding - CCDS21995.1 1 106.0 0.0 1.0 0.1 97.2 2.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000025491 Ifitm1 ENSMUST00000106040 ENSMUSP00000101655 TRANSLATION protein_coding - CCDS21995.1 3 106.0 0.0 1.0 0.1 97.2 2.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000110012 Or51a43 ENSMUST00000213184 ENSMUSP00000149070 TRANSLATION protein_coding - CCDS21606.1 5 314.0 0.0 1.0 11.5 406.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000110012 Or51a43 ENSMUST00000077417 ENSMUSP00000076633 TRANSLATION protein_coding - CCDS21606.1 - 314.0 0.0 1.0 11.5 406.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000110012 Or51a43 ENSMUST00000213991 ENSMUSP00000149600 TRANSLATION protein_coding - CCDS21606.1 5 314.0 0.0 1.0 11.5 406.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030847 Bag3 ENSMUST00000033136 ENSMUSP00000033136 TRANSLATION protein_coding - CCDS21898.1 1 577.0 0.0 1.4 0.4 103.2 0.0 -4,-6 1.0 28 12.0 PRINCIPAL:1 ENSMUSG00000030409 Dmpk ENSMUST00000148380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030409 Dmpk ENSMUST00000108474 ENSMUSP00000104114 TRANSLATION protein_coding - CCDS52053.1 1 605.0 18.0 8.95 0.0 262.3 0.0 -4,-7 0.0379 8 12.0 MINOR ENSMUSG00000030409 Dmpk ENSMUST00000148472 - NO_TRANSLATION retained_intron ENSMUSG00000030409 Dmpk ENSMUST00000132115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030409 Dmpk ENSMUST00000126264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030409 Dmpk ENSMUST00000128422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030409 Dmpk ENSMUST00000149188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030409 Dmpk ENSMUST00000137219 - NO_TRANSLATION retained_intron ENSMUSG00000030409 Dmpk ENSMUST00000140742 - NO_TRANSLATION retained_intron ENSMUSG00000030409 Dmpk ENSMUST00000238982 ENSMUSP00000158930 TRANSLATION protein_coding - - - 627.0 18.0 9.7 5.6 265.4 0.0 -4,-7 0.6763 7 15.84 ALTERNATIVE:1 ENSMUSG00000030409 Dmpk ENSMUST00000108473 ENSMUSP00000104113 TRANSLATION protein_coding - CCDS52054.1 1 537.0 18.0 9.7 6.0 265.4 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:2 ENSMUSG00000030409 Dmpk ENSMUST00000135839 - NO_TRANSLATION retained_intron ENSMUSG00000030409 Dmpk ENSMUST00000147215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030409 Dmpk ENSMUST00000122999 ENSMUSP00000123516 TRANSLATION protein_coding stop - 3 139.0 9.0 3.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000030409 Dmpk ENSMUST00000142725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030409 Dmpk ENSMUST00000032568 ENSMUSP00000032568 TRANSLATION protein_coding - CCDS39794.1 5 631.0 18.0 9.7 3.8 265.4 0.0 -4,-7 0.5995 8 15.12 ALTERNATIVE:2 ENSMUSG00000030409 Dmpk ENSMUST00000152050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030409 Dmpk ENSMUST00000143938 - NO_TRANSLATION retained_intron ENSMUSG00000030409 Dmpk ENSMUST00000154199 ENSMUSP00000118459 TRANSLATION nonsense_mediated_decay - - 1 588.0 18.0 9.7 0.0 265.4 0.0 -4,-7 0.0428 7 -2.0 MINOR ENSMUSG00000073966 Or51f5 ENSMUST00000098217 ENSMUSP00000095819 TRANSLATION protein_coding - CCDS21547.1 - 314.0 0.0 1.0 13.7 405.1 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073966 Or51f5 ENSMUST00000213432 ENSMUSP00000150963 TRANSLATION protein_coding - CCDS21547.1 5 314.0 0.0 1.0 13.7 405.1 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000058325 Dock1 ENSMUST00000210617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058325 Dock1 ENSMUST00000211570 - NO_TRANSLATION retained_intron ENSMUSG00000058325 Dock1 ENSMUST00000211593 ENSMUSP00000147945 TRANSLATION protein_coding - - 1 713.0 0.0 9.08 0.0 634.1 0.0 -4,-6 0.0118 20 0.0 MINOR ENSMUSG00000058325 Dock1 ENSMUST00000210464 - NO_TRANSLATION retained_intron ENSMUSG00000058325 Dock1 ENSMUST00000084488 ENSMUSP00000081531 TRANSLATION protein_coding - CCDS40166.1 5 1865.0 0.0 26.26 15.8 972.7 0.0 -4,-6 1.0 44 16.0 PRINCIPAL:1 ENSMUSG00000058325 Dock1 ENSMUST00000210121 ENSMUSP00000147797 TRANSLATION protein_coding start - 5 86.0 0.0 1.4 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000074359 Psg23 ENSMUST00000057810 ENSMUSP00000056586 TRANSLATION protein_coding - CCDS20874.1 1 471.0 0.0 3.2 0.1 165.7 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039202 Abhd2 ENSMUST00000135333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039202 Abhd2 ENSMUST00000037315 ENSMUSP00000038361 TRANSLATION protein_coding - CCDS21380.1 1 425.0 5.0 8.5 11.9 100.0 0.0 -4,-6 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000058976 Usp17lc ENSMUST00000106892 ENSMUSP00000102505 TRANSLATION protein_coding - - 1 545.0 4.0 0.6 0.1 175.7 0.0 -4,-5 0.6688 - 16.0 PRINCIPAL:1 ENSMUSG00000058976 Usp17lc ENSMUST00000079348 ENSMUSP00000078323 TRANSLATION protein_coding - CCDS21572.1 1 545.0 4.0 0.6 0.1 175.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000098022 Zfp82 ENSMUST00000182483 - NO_TRANSLATION retained_intron ENSMUSG00000098022 Zfp82 ENSMUST00000183190 ENSMUSP00000138469 TRANSLATION protein_coding - CCDS59724.1 1 83.0 0.0 2.0 0.0 78.2 0.0 -4,-6 0.0077 - 3.918 MINOR ENSMUSG00000098022 Zfp82 ENSMUST00000182546 ENSMUSP00000138217 TRANSLATION protein_coding - CCDS59723.1 3 500.0 51.0 2.04 3.2 308.7 0.0 -4,-6 0.2499 - 16.374 MINOR ENSMUSG00000098022 Zfp82 ENSMUST00000182919 ENSMUSP00000138642 TRANSLATION protein_coding stop - 3 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000098022 Zfp82 ENSMUST00000080834 ENSMUSP00000079647 TRANSLATION protein_coding - CCDS39876.1 5 530.0 51.0 3.04 9.6 315.3 0.0 -4,-6 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000098022 Zfp82 ENSMUST00000183115 ENSMUSP00000138677 TRANSLATION protein_coding stop - 5 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000098022 Zfp82 ENSMUST00000183025 - NO_TRANSLATION retained_intron ENSMUSG00000002409 Dyrk1b ENSMUST00000172467 ENSMUSP00000133431 TRANSLATION protein_coding - CCDS85251.1 1 689.0 20.0 6.5 4.4 169.3 0.0 -4,-2 0.553 6 19.158 MINOR ENSMUSG00000002409 Dyrk1b ENSMUST00000172761 ENSMUSP00000133719 TRANSLATION protein_coding - CCDS57532.1 1 589.0 20.0 5.5 6.8 173.6 0.0 -4,-7 0.8897 4 18.42 MINOR ENSMUSG00000002409 Dyrk1b ENSMUST00000085901 ENSMUSP00000083064 TRANSLATION protein_coding - CCDS21037.1 1 629.0 20.0 6.5 8.2 169.3 0.0 -4,-7 1.0 6 20.742 PRINCIPAL:1 ENSMUSG00000095301 Or5p55 ENSMUST00000077249 ENSMUSP00000076485 TRANSLATION protein_coding - CCDS21698.1 - 310.0 0.0 1.0 11.0 170.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095301 Or5p55 ENSMUST00000217173 ENSMUSP00000149760 TRANSLATION protein_coding - CCDS21698.1 5 310.0 0.0 1.0 11.0 170.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073960 Or51f1d ENSMUST00000098211 ENSMUSP00000095812 TRANSLATION protein_coding - CCDS21559.1 - 319.0 0.0 1.0 6.2 355.0 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000002980 Bcam ENSMUST00000155244 ENSMUSP00000121145 TRANSLATION protein_coding stop - 5 193.0 0.0 3.75 0.0 67.8 0.0 2,-2 0.0009 8 -2.0 MINOR ENSMUSG00000002980 Bcam ENSMUST00000135632 - NO_TRANSLATION retained_intron ENSMUSG00000002980 Bcam ENSMUST00000133427 ENSMUSP00000117998 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 1,-1 0.0 - -2.0 MINOR ENSMUSG00000002980 Bcam ENSMUST00000003061 ENSMUSP00000003061 TRANSLATION protein_coding - CCDS39803.1 1 622.0 0.0 11.25 3.9 214.9 0.0 2,-2 1.0 21 13.0 PRINCIPAL:1 ENSMUSG00000002980 Bcam ENSMUST00000133271 - NO_TRANSLATION retained_intron ENSMUSG00000038296 Galnt18 ENSMUST00000106663 ENSMUSP00000102274 TRANSLATION protein_coding - - 1 607.0 10.0 10.0 25.9 139.8 1.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000038296 Galnt18 ENSMUST00000049430 ENSMUSP00000043636 TRANSLATION protein_coding - CCDS21751.1 1 622.0 10.0 9.5 0.0 139.8 1.0 -4,-5 0.1535 6 16.998 MINOR ENSMUSG00000085601 Meiosin ENSMUST00000141380 ENSMUSP00000115575 TRANSLATION protein_coding - - 5 566.0 0.0 0.6 0.1 36.9 0.0 -4,-6 0.7955 - 12.0 PRINCIPAL:1 ENSMUSG00000085601 Meiosin ENSMUST00000127433 ENSMUSP00000115597 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000058685 Vmn2r51 ENSMUST00000094863 ENSMUSP00000092459 TRANSLATION protein_coding - CCDS52007.1 5 852.0 4.0 3.15 0.1 373.3 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000058685 Vmn2r51 ENSMUST00000233179 ENSMUSP00000156941 TRANSLATION nonsense_mediated_decay - - - 100.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0016 - -2.0 MINOR ENSMUSG00000030677 Kif22 ENSMUST00000205806 ENSMUSP00000145987 TRANSLATION protein_coding stop - 3 161.0 7.0 3.6 0.0 130.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030677 Kif22 ENSMUST00000032915 ENSMUSP00000032915 TRANSLATION protein_coding - CCDS21855.1 1 660.0 11.0 9.15 0.4 361.7 0.0 -4,-2 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000030677 Kif22 ENSMUST00000206412 - NO_TRANSLATION retained_intron ENSMUSG00000030677 Kif22 ENSMUST00000205754 ENSMUSP00000145752 TRANSLATION protein_coding start - 3 151.0 0.0 2.15 0.0 45.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030677 Kif22 ENSMUST00000206924 - NO_TRANSLATION retained_intron ENSMUSG00000030677 Kif22 ENSMUST00000206655 - NO_TRANSLATION retained_intron ENSMUSG00000109305 Smim38 ENSMUST00000207703 - NO_TRANSLATION retained_intron ENSMUSG00000109305 Smim38 ENSMUST00000207841 - NO_TRANSLATION retained_intron ENSMUSG00000109305 Smim38 ENSMUST00000208264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109305 Smim38 ENSMUST00000208788 ENSMUSP00000149353 TRANSLATION protein_coding - - 1 51.0 0.0 0.8 2.4 0.0 0.0 2,-1 0.8113 - 7.0 PRINCIPAL:1 ENSMUSG00000040139 9430038I01Rik ENSMUST00000068996 ENSMUSP00000070550 TRANSLATION protein_coding - CCDS52424.1 1 107.0 0.0 0.0 3.1 0.0 0.0 -4,-1 1.0 2 1.0 PRINCIPAL:2 ENSMUSG00000040139 9430038I01Rik ENSMUST00000120340 ENSMUSP00000112956 TRANSLATION protein_coding - - 1 107.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.4348 2 0.0 ALTERNATIVE:2 ENSMUSG00000040139 9430038I01Rik ENSMUST00000145881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040139 9430038I01Rik ENSMUST00000117404 ENSMUSP00000112892 TRANSLATION protein_coding - - 5 155.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0255 2 0.0 ALTERNATIVE:2 ENSMUSG00000040139 9430038I01Rik ENSMUST00000135335 - NO_TRANSLATION retained_intron ENSMUSG00000074311 Vmn1r139 ENSMUST00000173668 ENSMUSP00000133301 TRANSLATION protein_coding - - 3 117.0 0.0 0.0 0.0 0.0 3.0 -4,-7 0.0033 - 0.0 MINOR ENSMUSG00000074311 Vmn1r139 ENSMUST00000169730 ENSMUSP00000127303 TRANSLATION protein_coding - CCDS52107.1 - 297.0 0.0 0.0 0.0 26.1 6.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047084 Ngrn ENSMUST00000117989 ENSMUSP00000113444 TRANSLATION protein_coding - CCDS21393.2 1 293.0 0.0 0.0 8.3 321.5 0.0 -3,1 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000047084 Ngrn ENSMUST00000138005 - NO_TRANSLATION retained_intron ENSMUSG00000073969 Or52i2 ENSMUST00000213485 ENSMUSP00000149041 TRANSLATION protein_coding - CCDS21541.1 5 324.0 0.0 1.0 8.2 283.8 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073969 Or52i2 ENSMUST00000098219 ENSMUSP00000095822 TRANSLATION protein_coding - CCDS21541.1 - 324.0 0.0 1.0 8.2 283.8 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073969 Or52i2 ENSMUST00000217526 ENSMUSP00000150289 TRANSLATION protein_coding - CCDS21541.1 5 324.0 0.0 1.0 8.2 283.8 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095309 Vmn1r125 ENSMUST00000098739 ENSMUSP00000096335 TRANSLATION protein_coding - CCDS52093.1 - 307.0 0.0 0.0 0.4 54.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000063550 Nup98 ENSMUST00000210682 ENSMUSP00000148115 TRANSLATION protein_coding - CCDS85358.1 5 1816.0 0.0 9.066 8.9 371.7 0.0 -4,-7 1.0 34 15.0 PRINCIPAL:1 ENSMUSG00000063550 Nup98 ENSMUST00000211375 - NO_TRANSLATION retained_intron ENSMUSG00000063550 Nup98 ENSMUST00000211005 ENSMUSP00000147445 TRANSLATION protein_coding - CCDS85357.1 1 984.0 0.0 5.15 0.0 40.4 0.0 -4,-7 0.0424 16 0.0 MINOR ENSMUSG00000063550 Nup98 ENSMUST00000211235 ENSMUSP00000147486 TRANSLATION protein_coding - CCDS85360.1 5 1170.0 0.0 5.35 0.0 40.4 0.0 -4,-7 0.0499 20 0.0 MINOR ENSMUSG00000063550 Nup98 ENSMUST00000070165 ENSMUSP00000068530 TRANSLATION protein_coding - CCDS21528.1 1 1187.0 0.0 5.35 0.7 40.4 0.0 -4,-7 0.0642 20 0.0 MINOR ENSMUSG00000063550 Nup98 ENSMUST00000209242 - NO_TRANSLATION retained_intron ENSMUSG00000063550 Nup98 ENSMUST00000211022 ENSMUSP00000147454 TRANSLATION protein_coding - CCDS85359.1 2 967.0 0.0 5.15 0.0 38.8 0.0 -4,-7 0.0396 16 0.0 MINOR ENSMUSG00000063550 Nup98 ENSMUST00000211764 ENSMUSP00000147807 TRANSLATION protein_coding start/stop - 3 230.0 0.0 2.05 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000050425 Mrgprb2 ENSMUST00000052730 ENSMUSP00000061878 TRANSLATION protein_coding - CCDS21303.1 1 338.0 0.0 0.8 0.0 23.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030825 Hsd17b14 ENSMUST00000209745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030825 Hsd17b14 ENSMUST00000210997 ENSMUSP00000147851 TRANSLATION nonsense_mediated_decay start - 1 68.0 9.0 2.0 0.0 42.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030825 Hsd17b14 ENSMUST00000210300 ENSMUSP00000147715 TRANSLATION protein_coding - - 5 196.0 26.0 5.16 0.0 133.6 0.0 -4,-2 0.0012 - 9.642 MINOR ENSMUSG00000030825 Hsd17b14 ENSMUST00000209551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030825 Hsd17b14 ENSMUST00000211029 - NO_TRANSLATION retained_intron ENSMUSG00000030825 Hsd17b14 ENSMUST00000209566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030825 Hsd17b14 ENSMUST00000107752 ENSMUSP00000103381 TRANSLATION protein_coding - CCDS21251.2 5 273.0 27.0 7.75 5.0 175.5 0.0 -4,-2 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000091045 Vmn2r55 ENSMUST00000167771 ENSMUSP00000132834 TRANSLATION protein_coding stop - 5 469.0 0.0 2.33 0.0 192.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000091045 Vmn2r55 ENSMUST00000240718 ENSMUSP00000159511 TRANSLATION protein_coding - - - 845.0 0.0 3.02 0.0 454.4 8.0 2,-2 0.2387 - 6.98 ALTERNATIVE:2 ENSMUSG00000091045 Vmn2r55 ENSMUST00000232880 ENSMUSP00000156454 TRANSLATION protein_coding - - - 811.0 0.0 3.53 0.0 454.4 8.0 -4,-6 0.8514 - 8.0 PRINCIPAL:2 ENSMUSG00000091045 Vmn2r55 ENSMUST00000233763 ENSMUSP00000156395 TRANSLATION protein_coding - - - 773.0 0.0 2.98 0.0 454.4 8.0 -4,-6 0.124 - 6.902 ALTERNATIVE:2 ENSMUSG00000091045 Vmn2r55 ENSMUST00000172743 ENSMUSP00000133483 TRANSLATION protein_coding - CCDS57494.1 5 781.0 0.0 2.93 0.0 392.8 8.0 -4,-6 0.1676 - 5.6 MINOR ENSMUSG00000073970 Or51h1 ENSMUST00000098220 ENSMUSP00000095823 TRANSLATION protein_coding - CCDS21540.1 - 315.0 0.0 1.0 9.6 417.3 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031090 Nadsyn1 ENSMUST00000156638 ENSMUSP00000114889 TRANSLATION nonsense_mediated_decay - - 1 69.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031090 Nadsyn1 ENSMUST00000132520 ENSMUSP00000114380 TRANSLATION nonsense_mediated_decay - - 5 569.0 12.0 14.91 0.7 171.4 0.0 -4,-7 0.0333 9 -2.0 MINOR ENSMUSG00000031090 Nadsyn1 ENSMUST00000142749 - NO_TRANSLATION retained_intron ENSMUSG00000031090 Nadsyn1 ENSMUST00000155088 - NO_TRANSLATION retained_intron ENSMUSG00000031090 Nadsyn1 ENSMUST00000033415 ENSMUSP00000033415 TRANSLATION protein_coding - CCDS22047.1 1 725.0 15.0 18.06 0.1 171.4 0.0 -4,-7 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000031090 Nadsyn1 ENSMUST00000143366 ENSMUSP00000115857 TRANSLATION nonsense_mediated_decay - - 5 69.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031090 Nadsyn1 ENSMUST00000156779 ENSMUSP00000120220 TRANSLATION protein_coding stop - 5 102.0 0.0 3.0 0.0 28.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000031090 Nadsyn1 ENSMUST00000143210 - NO_TRANSLATION retained_intron ENSMUSG00000073963 Or51h5 ENSMUST00000215782 ENSMUSP00000149174 TRANSLATION protein_coding - CCDS21553.1 5 318.0 0.0 1.0 8.2 395.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073963 Or51h5 ENSMUST00000098214 ENSMUSP00000095816 TRANSLATION protein_coding - CCDS21553.1 - 318.0 0.0 1.0 8.2 395.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073963 Or51h5 ENSMUST00000214096 ENSMUSP00000150579 TRANSLATION protein_coding - CCDS21553.1 5 318.0 0.0 1.0 8.2 395.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070802 Pnma8b ENSMUST00000094807 ENSMUSP00000092401 TRANSLATION protein_coding - CCDS52043.1 - 661.0 0.0 0.0 0.1 115.1 0.0 -4,-5 1.0 11 6.0 PRINCIPAL:1 ENSMUSG00000025496 Drd4 ENSMUST00000209649 - NO_TRANSLATION retained_intron ENSMUSG00000025496 Drd4 ENSMUST00000026569 ENSMUSP00000026569 TRANSLATION protein_coding - CCDS22007.1 1 387.0 0.0 3.2 0.4 236.1 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057067 Or14c45 ENSMUST00000172965 ENSMUSP00000134371 TRANSLATION protein_coding - CCDS52299.1 5 310.0 0.0 1.0 2.3 153.9 6.0 -2,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057067 Or14c45 ENSMUST00000071112 ENSMUSP00000132942 TRANSLATION protein_coding - CCDS52299.1 - 310.0 0.0 1.0 2.3 153.9 6.0 -2,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031023 Akip1 ENSMUST00000143581 ENSMUSP00000115021 TRANSLATION protein_coding stop - 5 153.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0222 - -2.0 MINOR ENSMUSG00000031023 Akip1 ENSMUST00000147497 - NO_TRANSLATION retained_intron ENSMUSG00000031023 Akip1 ENSMUST00000033335 ENSMUSP00000033335 TRANSLATION protein_coding - CCDS21736.1 1 212.0 0.0 0.0 7.4 0.0 0.0 -4,-1 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000036957 Lrfn3 ENSMUST00000046351 ENSMUSP00000037616 TRANSLATION protein_coding - CCDS21088.1 1 626.0 0.0 0.8 0.1 167.8 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000045013 Or6b6 ENSMUST00000051715 ENSMUSP00000055724 TRANSLATION protein_coding - CCDS21682.1 2 314.0 0.0 1.0 5.3 196.9 5.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000045013 Or6b6 ENSMUST00000216335 ENSMUSP00000149016 TRANSLATION protein_coding - CCDS21682.1 5 314.0 0.0 1.0 5.3 196.9 5.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000045013 Or6b6 ENSMUST00000207200 ENSMUSP00000146570 TRANSLATION protein_coding - CCDS21682.1 2 314.0 0.0 1.0 5.3 196.9 5.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000037337 Map4k1 ENSMUST00000208784 - NO_TRANSLATION retained_intron ENSMUSG00000037337 Map4k1 ENSMUST00000208227 ENSMUSP00000146807 TRANSLATION protein_coding - - 1 750.0 11.0 7.83 0.0 332.9 0.0 -4,-5 0.0073 9 6.444 MINOR ENSMUSG00000037337 Map4k1 ENSMUST00000207185 ENSMUSP00000147189 TRANSLATION nonsense_mediated_decay - - 1 641.0 20.0 9.33 0.0 267.5 0.0 -4,-5 0.0242 10 -2.0 MINOR ENSMUSG00000037337 Map4k1 ENSMUST00000085835 ENSMUSP00000082995 TRANSLATION protein_coding - CCDS39865.1 1 827.0 20.0 9.33 4.0 375.5 0.0 -4,-5 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000053228 Ceacam3 ENSMUST00000108491 ENSMUSP00000104131 TRANSLATION protein_coding - CCDS57499.1 5 706.0 0.0 3.48 0.1 220.7 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044120 Or56a5 ENSMUST00000209879 ENSMUSP00000148110 TRANSLATION protein_coding - - 5 313.0 0.0 1.0 12.5 243.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044120 Or56a5 ENSMUST00000061284 ENSMUSP00000060527 TRANSLATION protein_coding - CCDS21642.1 - 319.0 0.0 1.0 1.8 243.7 5.0 -4,-6 0.6212 - 12.21 MINOR ENSMUSG00000011382 Dhdh ENSMUST00000210440 - NO_TRANSLATION retained_intron ENSMUSG00000011382 Dhdh ENSMUST00000209450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011382 Dhdh ENSMUST00000011526 ENSMUSP00000011526 TRANSLATION protein_coding - CCDS21247.1 1 333.0 19.0 7.0 22.5 82.6 0.0 -2,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000050366 Or6b13 ENSMUST00000051943 ENSMUSP00000053565 TRANSLATION protein_coding - CCDS21969.1 - 318.0 0.0 1.0 6.3 188.0 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050366 Or6b13 ENSMUST00000215815 ENSMUSP00000150970 TRANSLATION protein_coding - CCDS21969.1 5 318.0 0.0 1.0 6.3 188.0 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000108948 Or2ag13 ENSMUST00000216868 ENSMUSP00000149773 TRANSLATION protein_coding - CCDS21667.1 5 315.0 0.0 1.0 7.2 163.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000074111 Mrgpra9 ENSMUST00000179005 ENSMUSP00000136396 TRANSLATION protein_coding - CCDS57550.2 5 332.0 0.0 1.0 0.1 42.4 7.0 -1,-4 0.8451 - 6.0 PRINCIPAL:4 ENSMUSG00000074111 Mrgpra9 ENSMUST00000098436 ENSMUSP00000096035 TRANSLATION protein_coding - - 5 331.0 0.0 1.0 0.1 42.4 7.0 -2,-3 0.8037 - 6.0 ALTERNATIVE:2 ENSMUSG00000030990 Pgap2 ENSMUST00000156529 ENSMUSP00000121521 TRANSLATION protein_coding - CCDS40048.1 1 250.0 0.0 6.73 10.7 142.9 11.0 -4,-7 1.0 2 10.334 PRINCIPAL:4 ENSMUSG00000030990 Pgap2 ENSMUST00000146996 ENSMUSP00000118677 TRANSLATION protein_coding stop - 5 55.0 0.0 1.23 0.0 0.0 5.0 -4,-7 0.0024 - -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000147536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030990 Pgap2 ENSMUST00000133311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030990 Pgap2 ENSMUST00000119816 ENSMUSP00000113261 TRANSLATION nonsense_mediated_decay - - 5 64.0 0.0 1.23 0.0 0.0 5.0 -4,-7 0.0024 - -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000140631 ENSMUSP00000119683 TRANSLATION protein_coding stop - 3 41.0 0.0 0.48 0.0 0.0 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000033292 ENSMUSP00000033292 TRANSLATION protein_coding - - 5 254.0 0.0 6.73 10.7 148.9 11.0 -4,-7 0.8809 2 11.0 ALTERNATIVE:1 ENSMUSG00000030990 Pgap2 ENSMUST00000138753 ENSMUSP00000116858 TRANSLATION protein_coding stop - 2 123.0 0.0 3.48 0.0 51.7 5.0 -4,-7 0.0022 1 -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000129340 ENSMUSP00000119692 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 1.23 0.0 0.0 5.0 -4,-7 0.0039 - -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000143541 ENSMUSP00000117450 TRANSLATION protein_coding stop - 5 79.0 0.0 1.98 0.0 34.1 5.0 -4,-7 0.0022 1 -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000142873 ENSMUSP00000121988 TRANSLATION protein_coding stop - 3 135.0 0.0 3.81 0.0 60.4 6.0 -4,-7 0.0022 1 -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000143759 - NO_TRANSLATION retained_intron ENSMUSG00000030990 Pgap2 ENSMUST00000127804 - NO_TRANSLATION retained_intron ENSMUSG00000030990 Pgap2 ENSMUST00000145352 ENSMUSP00000123523 TRANSLATION nonsense_mediated_decay - - 5 64.0 0.0 1.23 0.0 0.0 5.0 -4,-7 0.0024 - -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000146559 ENSMUSP00000123444 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000150891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030990 Pgap2 ENSMUST00000138479 ENSMUSP00000115590 TRANSLATION protein_coding stop - 3 210.0 0.0 5.73 0.0 111.9 9.0 -4,-7 0.0035 1 -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000153020 ENSMUSP00000123570 TRANSLATION protein_coding stop - 5 210.0 0.0 5.73 0.0 111.9 9.0 -4,-7 0.0035 1 -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000134621 - NO_TRANSLATION retained_intron ENSMUSG00000030990 Pgap2 ENSMUST00000124619 - NO_TRANSLATION retained_intron ENSMUSG00000030990 Pgap2 ENSMUST00000120879 ENSMUSP00000114016 TRANSLATION protein_coding - CCDS40048.1 1 250.0 0.0 6.73 10.7 142.9 11.0 -4,-7 1.0 2 10.334 PRINCIPAL:4 ENSMUSG00000030990 Pgap2 ENSMUST00000126914 ENSMUSP00000114853 TRANSLATION protein_coding stop - 2 101.0 0.0 2.73 0.0 50.5 5.0 -4,-7 0.0022 1 -2.0 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000146394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030990 Pgap2 ENSMUST00000120119 ENSMUSP00000113574 TRANSLATION protein_coding - - 1 252.0 0.0 6.1 6.0 143.5 7.0 -3,-7 0.6034 1 8.285 MINOR ENSMUSG00000030990 Pgap2 ENSMUST00000140058 ENSMUSP00000122482 TRANSLATION nonsense_mediated_decay - - 3 81.0 0.0 1.23 0.0 0.0 5.0 -4,-7 0.0039 - -2.0 MINOR ENSMUSG00000030587 2200002D01Rik ENSMUST00000032808 ENSMUSP00000032808 TRANSLATION protein_coding - CCDS52172.1 1 114.0 0.0 0.0 0.0 123.0 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000030587 2200002D01Rik ENSMUST00000151339 - NO_TRANSLATION retained_intron ENSMUSG00000000154 Slc22a18 ENSMUST00000105917 ENSMUSP00000101537 TRANSLATION protein_coding - CCDS22041.1 1 410.0 0.0 1.62275 0.0 105.2 11.0 -2,-4 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000000154 Slc22a18 ENSMUST00000141988 ENSMUSP00000120434 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.132 0.0 0.0 2.0 -3,-5 0.0002 - -2.0 MINOR ENSMUSG00000000154 Slc22a18 ENSMUST00000052348 ENSMUSP00000056082 TRANSLATION protein_coding - CCDS22041.1 1 410.0 0.0 1.62275 0.0 105.2 11.0 -2,-4 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000000154 Slc22a18 ENSMUST00000145943 ENSMUSP00000115345 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 0.132 0.0 0.0 2.0 -3,-4 0.0002 - -2.0 MINOR ENSMUSG00000000154 Slc22a18 ENSMUST00000150791 ENSMUSP00000123047 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.132 0.0 0.0 2.0 -3,-5 0.0002 - -2.0 MINOR ENSMUSG00000038623 Tm6sf1 ENSMUST00000130006 - NO_TRANSLATION retained_intron ENSMUSG00000038623 Tm6sf1 ENSMUST00000119543 ENSMUSP00000112400 TRANSLATION protein_coding - CCDS80744.1 1 279.0 0.0 7.33 9.8 72.7 10.0 -4,-7 0.7223 5 8.71 MINOR ENSMUSG00000038623 Tm6sf1 ENSMUST00000147977 - NO_TRANSLATION retained_intron ENSMUSG00000038623 Tm6sf1 ENSMUST00000126334 ENSMUSP00000121292 TRANSLATION nonsense_mediated_decay - - 1 161.0 0.0 4.08 0.0 0.0 6.0 -3,-5 0.0038 - -2.0 MINOR ENSMUSG00000038623 Tm6sf1 ENSMUST00000134861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038623 Tm6sf1 ENSMUST00000041890 ENSMUSP00000038017 TRANSLATION protein_coding - CCDS21408.1 1 370.0 0.0 10.08 16.9 72.7 14.0 -3,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000038623 Tm6sf1 ENSMUST00000124616 - NO_TRANSLATION retained_intron ENSMUSG00000096386 Vmn1r100 ENSMUST00000177815 ENSMUSP00000137480 TRANSLATION protein_coding - CCDS52072.1 - 307.0 0.0 0.0 0.4 53.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000040907 Atp1a3 ENSMUST00000080882 ENSMUSP00000079691 TRANSLATION protein_coding - CCDS20969.2 1 1013.0 11.0 20.38 12.8 453.6 8.0 -4,-5 1.0 29 19.936 MINOR ENSMUSG00000040907 Atp1a3 ENSMUST00000125444 - NO_TRANSLATION retained_intron ENSMUSG00000040907 Atp1a3 ENSMUST00000196684 ENSMUSP00000143735 TRANSLATION protein_coding - - 5 1026.0 11.0 20.38 25.4 453.6 8.0 -4,-5 0.9562 29 22.0 PRINCIPAL:1 ENSMUSG00000040907 Atp1a3 ENSMUST00000146595 - NO_TRANSLATION retained_intron ENSMUSG00000040907 Atp1a3 ENSMUST00000102858 ENSMUSP00000099922 TRANSLATION protein_coding - - 2 1053.0 11.0 20.05 0.0 453.6 8.0 -4,-5 0.1943 28 17.34 MINOR ENSMUSG00000078624 Or51ab3 ENSMUST00000214173 ENSMUSP00000149332 TRANSLATION protein_coding - CCDS40056.1 5 317.0 0.0 1.0 2.5 329.9 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000078624 Or51ab3 ENSMUST00000106888 ENSMUSP00000102501 TRANSLATION protein_coding - CCDS40056.1 - 317.0 0.0 1.0 2.5 329.9 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000000486 Septin1 ENSMUST00000138541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000486 Septin1 ENSMUST00000133913 ENSMUSP00000145906 TRANSLATION protein_coding stop - 3 145.0 10.0 3.5 0.0 218.3 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000000486 Septin1 ENSMUST00000106313 ENSMUSP00000101920 TRANSLATION protein_coding - - 5 338.0 16.0 8.0 0.4 392.8 0.0 -4,-5 0.0524 9 15.702 MINOR ENSMUSG00000000486 Septin1 ENSMUST00000133591 - NO_TRANSLATION retained_intron ENSMUSG00000000486 Septin1 ENSMUST00000133733 - NO_TRANSLATION retained_intron ENSMUSG00000000486 Septin1 ENSMUST00000106314 ENSMUSP00000101921 TRANSLATION protein_coding - CCDS40141.1 1 366.0 16.0 8.75 9.8 406.1 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000000486 Septin1 ENSMUST00000205570 - NO_TRANSLATION retained_intron ENSMUSG00000000486 Septin1 ENSMUST00000142356 ENSMUSP00000114468 TRANSLATION protein_coding stop - 5 186.0 14.0 4.65 0.0 262.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000000486 Septin1 ENSMUST00000152267 ENSMUSP00000146307 TRANSLATION protein_coding stop - 5 328.0 13.0 8.0 0.0 242.4 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000000486 Septin1 ENSMUST00000131208 - NO_TRANSLATION retained_intron ENSMUSG00000049674 Or10a2 ENSMUST00000054629 ENSMUSP00000095742 TRANSLATION protein_coding - CCDS40077.1 - 317.0 0.0 1.0 14.5 187.8 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000049674 Or10a2 ENSMUST00000214123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049674 Or10a2 ENSMUST00000214429 ENSMUSP00000151106 TRANSLATION protein_coding - CCDS40077.1 5 317.0 0.0 1.0 14.5 187.8 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000055078 Gabra5 ENSMUST00000206382 ENSMUSP00000146238 TRANSLATION protein_coding - CCDS21322.1 5 463.0 0.0 6.5 19.4 275.0 2.0 -1,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000055078 Gabra5 ENSMUST00000206734 ENSMUSP00000145685 TRANSLATION protein_coding - CCDS21322.1 1 463.0 0.0 6.5 19.4 275.0 2.0 -1,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000055078 Gabra5 ENSMUST00000068456 ENSMUSP00000063276 TRANSLATION protein_coding - CCDS21322.1 1 463.0 0.0 6.5 19.4 275.0 2.0 -1,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000073804 Nps ENSMUST00000210907 ENSMUSP00000147336 TRANSLATION protein_coding - - 5 72.0 0.0 0.0 0.0 126.3 0.0 -4,-7 0.0319 - 6.0 MINOR ENSMUSG00000073804 Nps ENSMUST00000097983 ENSMUSP00000095597 TRANSLATION protein_coding - CCDS52420.1 5 89.0 0.0 0.0 4.9 126.3 0.0 3,-1 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000073804 Nps ENSMUST00000210697 ENSMUSP00000147505 TRANSLATION protein_coding - - 5 72.0 0.0 0.0 0.0 126.3 0.0 -4,-7 0.0319 - 6.0 MINOR ENSMUSG00000074211 Sdhaf1 ENSMUST00000098586 ENSMUSP00000096185 TRANSLATION protein_coding - CCDS39881.1 - 118.0 0.0 1.0 6.5 44.7 0.0 -4,0 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000101401 Scgb1b18 ENSMUST00000191255 ENSMUSP00000140824 TRANSLATION protein_coding - - 5 93.0 0.0 1.48 0.0 57.1 0.0 3,-2 0.8204 - 12.0 PRINCIPAL:1 ENSMUSG00000015721 Nlrp5 ENSMUST00000108441 ENSMUSP00000104080 TRANSLATION protein_coding - CCDS85233.1 1 1085.0 5.0 6.05 0.0 199.6 0.0 -4,-5 0.2153 - 10.78 MINOR ENSMUSG00000015721 Nlrp5 ENSMUST00000133237 ENSMUSP00000122007 TRANSLATION nonsense_mediated_decay - - 1 989.0 5.0 4.6 0.0 179.8 0.0 -4,-5 0.0113 - -2.0 MINOR ENSMUSG00000015721 Nlrp5 ENSMUST00000015866 ENSMUSP00000015866 TRANSLATION protein_coding - CCDS20930.1 1 1111.0 5.0 6.86 0.0 215.0 0.0 -4,-5 0.6104 - 13.0 ALTERNATIVE:2 ENSMUSG00000015721 Nlrp5 ENSMUST00000207536 - NO_TRANSLATION retained_intron ENSMUSG00000015721 Nlrp5 ENSMUST00000139661 ENSMUSP00000118638 TRANSLATION nonsense_mediated_decay - - 1 727.0 5.0 0.6 0.0 148.8 0.0 -4,-5 0.0077 - -2.0 MINOR ENSMUSG00000015721 Nlrp5 ENSMUST00000086341 ENSMUSP00000083524 TRANSLATION protein_coding - CCDS20929.1 1 1095.0 5.0 6.86 0.0 215.0 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:2 ENSMUSG00000025503 Taldo1 ENSMUST00000211759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025503 Taldo1 ENSMUST00000125597 - NO_TRANSLATION retained_intron ENSMUSG00000025503 Taldo1 ENSMUST00000026576 ENSMUSP00000026576 TRANSLATION protein_coding - CCDS22011.1 1 337.0 7.0 7.33 30.0 343.3 0.0 -4,-7 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000025503 Taldo1 ENSMUST00000211654 ENSMUSP00000147332 TRANSLATION protein_coding - - 5 382.0 7.0 7.33 0.0 331.1 0.0 -4,-7 0.0275 21 17.268 MINOR ENSMUSG00000025503 Taldo1 ENSMUST00000141793 - NO_TRANSLATION retained_intron ENSMUSG00000115744 Vmn1r80 ENSMUST00000227755 ENSMUSP00000154371 TRANSLATION protein_coding - CCDS20805.1 - 308.0 0.0 0.4 0.0 103.5 9.0 -1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000115744 Vmn1r80 ENSMUST00000228578 ENSMUSP00000153967 TRANSLATION protein_coding - CCDS20805.1 - 308.0 0.0 0.4 0.0 103.5 9.0 -1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000115744 Vmn1r80 ENSMUST00000227205 ENSMUSP00000154216 TRANSLATION protein_coding - CCDS20805.1 - 308.0 0.0 0.4 0.0 103.5 9.0 -1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000115744 Vmn1r80 ENSMUST00000227240 - NO_TRANSLATION retained_intron ENSMUSG00000115744 Vmn1r80 ENSMUST00000228047 - NO_TRANSLATION retained_intron ENSMUSG00000115744 Vmn1r80 ENSMUST00000228563 - NO_TRANSLATION retained_intron ENSMUSG00000115744 Vmn1r80 ENSMUST00000227471 ENSMUSP00000154504 TRANSLATION protein_coding - - - 214.0 0.0 0.4 0.0 51.6 7.0 -1,-4 0.0615 - 8.886 MINOR ENSMUSG00000115744 Vmn1r80 ENSMUST00000075053 ENSMUSP00000074564 TRANSLATION protein_coding - CCDS20805.1 - 308.0 0.0 0.4 0.0 103.5 9.0 -1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000115744 Vmn1r80 ENSMUST00000228028 ENSMUSP00000154548 TRANSLATION protein_coding - - - 214.0 0.0 0.4 0.0 51.6 7.0 -1,-4 0.0615 - 8.886 MINOR ENSMUSG00000078794 Dact3 ENSMUST00000108493 ENSMUSP00000104133 TRANSLATION protein_coding - CCDS39788.1 1 610.0 0.0 0.0 0.1 123.1 0.0 -4,-2 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000090824 Or2bd2 ENSMUST00000168341 ENSMUSP00000130328 TRANSLATION protein_coding - CCDS20776.1 - 321.0 0.0 0.8 3.1 166.4 4.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000090824 Or2bd2 ENSMUST00000218906 ENSMUSP00000151666 TRANSLATION protein_coding - CCDS20776.1 5 321.0 0.0 0.8 3.1 166.4 4.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056972 Magel2 ENSMUST00000080403 ENSMUSP00000079265 TRANSLATION protein_coding - CCDS52264.1 - 1284.0 0.0 0.0 0.0 0.0 0.0 -4,-7 1.0 1 0.0 PRINCIPAL:1 ENSMUSG00000062732 Lypd4 ENSMUST00000122995 ENSMUSP00000122913 TRANSLATION protein_coding stop - 5 129.0 0.0 2.0 0.0 0.0 0.0 4,-1 0.0008 - -2.0 MINOR ENSMUSG00000062732 Lypd4 ENSMUST00000079306 ENSMUSP00000078287 TRANSLATION protein_coding - CCDS20964.1 1 246.0 0.0 4.0 4.9 75.5 0.0 4,-1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000073914 Or52e4 ENSMUST00000098161 ENSMUSP00000095764 TRANSLATION protein_coding - CCDS21638.1 - 312.0 0.0 1.0 12.5 397.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073914 Or52e4 ENSMUST00000213204 ENSMUSP00000149888 TRANSLATION protein_coding - CCDS21638.1 5 312.0 0.0 1.0 12.5 397.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035390 Brsk1 ENSMUST00000206024 ENSMUSP00000145970 TRANSLATION protein_coding - CCDS85205.1 1 343.0 18.0 7.51 0.0 248.8 0.0 -4,-6 0.0451 3 12.0 MINOR ENSMUSG00000035390 Brsk1 ENSMUST00000123637 ENSMUSP00000145821 TRANSLATION protein_coding start - 3 45.0 0.0 1.5 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000035390 Brsk1 ENSMUST00000205666 ENSMUSP00000145845 TRANSLATION protein_coding - - 1 307.0 12.0 6.908 0.0 237.8 0.0 -4,-5 0.002 3 7.338 MINOR ENSMUSG00000035390 Brsk1 ENSMUST00000048248 ENSMUSP00000039517 TRANSLATION protein_coding - CCDS20741.1 1 778.0 18.0 11.16 6.7 248.8 0.0 -4,-6 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000035390 Brsk1 ENSMUST00000120836 ENSMUSP00000113448 TRANSLATION protein_coding - - 5 703.0 10.0 9.61 1.7 210.4 0.0 -4,-5 0.0659 15 7.506 MINOR ENSMUSG00000078698 Mrgpra3 ENSMUST00000176369 ENSMUSP00000135437 TRANSLATION protein_coding - CCDS21297.2 1 329.0 0.0 1.0 0.1 34.0 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095061 E030018B13Rik ENSMUST00000177638 ENSMUSP00000136435 TRANSLATION protein_coding - CCDS57554.1 1 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000013367 Iglon5 ENSMUST00000107974 ENSMUSP00000103608 TRANSLATION protein_coding - CCDS52223.1 1 336.0 0.0 6.05 6.2 119.0 0.0 1,-3 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000013367 Iglon5 ENSMUST00000206336 ENSMUSP00000145830 TRANSLATION protein_coding start - 3 161.0 0.0 3.3 0.0 52.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030629 Zfand6 ENSMUST00000209140 - NO_TRANSLATION retained_intron ENSMUSG00000030629 Zfand6 ENSMUST00000208831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030629 Zfand6 ENSMUST00000209165 ENSMUSP00000146878 TRANSLATION protein_coding stop - 5 217.0 12.0 3.08 0.0 86.7 0.0 -4,-5 0.0423 2 -2.0 MINOR ENSMUSG00000030629 Zfand6 ENSMUST00000209117 ENSMUSP00000146518 TRANSLATION protein_coding - CCDS21419.1 1 223.0 12.0 3.278 2.3 86.7 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000030629 Zfand6 ENSMUST00000207975 ENSMUSP00000146559 TRANSLATION protein_coding stop - 5 55.0 4.0 1.0 0.0 49.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030629 Zfand6 ENSMUST00000069537 ENSMUSP00000069228 TRANSLATION protein_coding - CCDS21419.1 1 223.0 12.0 3.278 2.3 86.7 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000030629 Zfand6 ENSMUST00000207865 ENSMUSP00000146682 TRANSLATION protein_coding stop - 5 188.0 10.0 2.33 0.0 49.7 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000030629 Zfand6 ENSMUST00000208519 - NO_TRANSLATION retained_intron ENSMUSG00000030629 Zfand6 ENSMUST00000208782 ENSMUSP00000147192 TRANSLATION protein_coding stop - 3 184.0 8.0 2.33 0.0 49.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030629 Zfand6 ENSMUST00000178385 ENSMUSP00000135968 TRANSLATION protein_coding - CCDS21419.1 1 223.0 12.0 3.278 2.3 86.7 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000030474 Siglece ENSMUST00000032667 ENSMUSP00000032667 TRANSLATION protein_coding - CCDS21178.1 1 467.0 0.0 3.699 0.0 79.4 2.0 4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000030474 Siglece ENSMUST00000206421 ENSMUSP00000146072 TRANSLATION protein_coding start - 3 221.0 0.0 1.899 0.0 34.5 1.0 -4,-5 0.0023 - -2.0 MINOR ENSMUSG00000063305 Psg20 ENSMUST00000108482 ENSMUSP00000104122 TRANSLATION protein_coding - - 5 472.0 0.0 3.3 0.4 156.8 0.0 -2,-6 0.765 - 12.0 PRINCIPAL:1 ENSMUSG00000046182 Gsg1l ENSMUST00000073935 ENSMUSP00000073591 TRANSLATION protein_coding - CCDS52395.1 1 322.0 0.0 2.15 2.3 145.7 0.0 2,-3 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000090806 Vmn2r70 ENSMUST00000168230 ENSMUSP00000129703 TRANSLATION protein_coding - CCDS52292.1 5 854.0 4.0 2.705 0.0 346.4 9.0 -2,-5 0.6957 - 12.0 ALTERNATIVE:2 ENSMUSG00000090806 Vmn2r70 ENSMUST00000240721 ENSMUSP00000159514 TRANSLATION protein_coding - - - 851.0 4.0 2.705 0.0 349.3 9.0 -2,-5 0.8581 - 12.0 PRINCIPAL:4 ENSMUSG00000090806 Vmn2r70 ENSMUST00000233631 ENSMUSP00000156674 TRANSLATION protein_coding - - - 821.0 4.0 2.505 0.0 342.0 9.0 -2,-5 0.0807 - 11.556 ALTERNATIVE:2 ENSMUSG00000006019 Dhx34 ENSMUST00000118795 ENSMUSP00000112865 TRANSLATION protein_coding - - 5 1145.0 8.0 5.072 2.4 146.8 0.0 -4,-6 0.7744 13 13.0 ALTERNATIVE:2 ENSMUSG00000006019 Dhx34 ENSMUST00000094816 ENSMUSP00000092410 TRANSLATION protein_coding - CCDS39783.1 1 1145.0 8.0 5.072 2.4 146.8 0.0 -4,-6 1.0 13 13.0 PRINCIPAL:4 ENSMUSG00000006019 Dhx34 ENSMUST00000121123 ENSMUSP00000113673 TRANSLATION protein_coding - - 5 1145.0 8.0 5.072 2.4 146.8 0.0 -4,-6 0.7744 13 13.0 ALTERNATIVE:2 ENSMUSG00000006019 Dhx34 ENSMUST00000163968 ENSMUSP00000126915 TRANSLATION protein_coding - CCDS39783.1 1 1145.0 8.0 5.072 2.4 146.8 0.0 -4,-6 1.0 13 13.0 PRINCIPAL:4 ENSMUSG00000006019 Dhx34 ENSMUST00000119102 ENSMUSP00000113393 TRANSLATION protein_coding - - 5 1145.0 8.0 5.072 2.4 146.8 0.0 -4,-6 0.7744 13 13.0 ALTERNATIVE:2 ENSMUSG00000006019 Dhx34 ENSMUST00000128452 - NO_TRANSLATION retained_intron ENSMUSG00000006019 Dhx34 ENSMUST00000133518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025584 Pde8a ENSMUST00000128154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025584 Pde8a ENSMUST00000026672 ENSMUSP00000026672 TRANSLATION protein_coding - CCDS40005.1 1 823.0 6.0 7.0 0.8 354.3 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000025584 Pde8a ENSMUST00000130494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037032 Apbb1 ENSMUST00000188726 ENSMUSP00000140822 TRANSLATION protein_coding stop - 3 145.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000186868 ENSMUSP00000140052 TRANSLATION protein_coding stop - 5 105.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000188368 ENSMUSP00000139788 TRANSLATION protein_coding - - 5 487.0 0.0 8.31 6.9 189.3 0.0 -4,-6 0.7353 6 10.529 ALTERNATIVE:1 ENSMUSG00000037032 Apbb1 ENSMUST00000188001 ENSMUSP00000147609 TRANSLATION nonsense_mediated_decay - - 5 89.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000189378 ENSMUSP00000140979 TRANSLATION protein_coding - CCDS80775.1 1 708.0 0.0 8.31 8.0 184.4 0.0 -4,-7 1.0 8 11.0 PRINCIPAL:4 ENSMUSG00000037032 Apbb1 ENSMUST00000187057 ENSMUSP00000139899 TRANSLATION protein_coding - CCDS80774.1 5 485.0 0.0 8.31 6.9 185.4 0.0 -4,-6 0.843 6 10.529 ALTERNATIVE:1 ENSMUSG00000037032 Apbb1 ENSMUST00000189072 ENSMUSP00000139575 TRANSLATION protein_coding - CCDS80773.1 5 451.0 0.0 7.81 7.3 160.0 0.0 -4,-5 0.6725 6 8.698 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000191011 ENSMUSP00000140973 TRANSLATION protein_coding - CCDS80775.1 1 708.0 0.0 8.31 8.0 184.4 0.0 -4,-7 1.0 8 11.0 PRINCIPAL:4 ENSMUSG00000037032 Apbb1 ENSMUST00000190369 ENSMUSP00000140486 TRANSLATION protein_coding - CCDS80773.1 5 451.0 0.0 7.81 7.3 160.0 0.0 -4,-5 0.6725 6 8.698 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000188440 ENSMUSP00000140715 TRANSLATION protein_coding stop - 5 223.0 0.0 4.16 0.0 102.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000191601 ENSMUSP00000140116 TRANSLATION protein_coding - CCDS80776.1 5 710.0 0.0 8.31 8.0 188.3 0.0 -4,-7 0.9857 8 11.0 ALTERNATIVE:1 ENSMUSG00000037032 Apbb1 ENSMUST00000187051 ENSMUSP00000139755 TRANSLATION protein_coding stop - 3 120.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000191250 - NO_TRANSLATION retained_intron ENSMUSG00000037032 Apbb1 ENSMUST00000187683 ENSMUSP00000139426 TRANSLATION protein_coding stop - 3 158.0 0.0 2.33 0.0 31.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000189265 ENSMUSP00000140137 TRANSLATION protein_coding - - 5 235.0 0.0 3.98 0.0 59.1 0.0 -4,-6 0.0 3 0.334 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000190961 - NO_TRANSLATION retained_intron ENSMUSG00000037032 Apbb1 ENSMUST00000186814 ENSMUSP00000147397 TRANSLATION nonsense_mediated_decay start - 5 131.0 0.0 2.33 0.0 75.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000187721 ENSMUSP00000140192 TRANSLATION protein_coding stop - 2 260.0 0.0 3.83 0.0 100.8 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000210079 ENSMUSP00000147947 TRANSLATION protein_coding stop - 5 122.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037032 Apbb1 ENSMUST00000211614 ENSMUSP00000148234 TRANSLATION protein_coding start - 3 230.0 0.0 3.15 0.0 27.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000094298 Vmn1r241 ENSMUST00000169774 ENSMUSP00000130340 TRANSLATION protein_coding - CCDS52070.1 - 307.0 0.0 0.0 0.4 59.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062142 Or52r1 ENSMUST00000217024 ENSMUSP00000149088 TRANSLATION protein_coding - CCDS21550.1 5 314.0 0.0 1.0 12.6 377.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062142 Or52r1 ENSMUST00000078191 ENSMUSP00000077321 TRANSLATION protein_coding - CCDS21550.1 - 314.0 0.0 1.0 12.6 377.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025789 St8sia2 ENSMUST00000026896 ENSMUSP00000026896 TRANSLATION protein_coding - CCDS21365.1 1 375.0 13.0 4.5 21.6 247.1 0.0 1,-4 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000025789 St8sia2 ENSMUST00000191970 ENSMUSP00000141307 TRANSLATION protein_coding stop - 5 206.0 7.0 2.5 0.0 128.2 0.0 1,-4 0.0012 - -2.0 MINOR ENSMUSG00000034825 Nrip3 ENSMUST00000207400 ENSMUSP00000147090 TRANSLATION protein_coding stop - 3 89.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034825 Nrip3 ENSMUST00000033331 ENSMUSP00000033331 TRANSLATION protein_coding - CCDS21739.1 1 240.0 0.0 1.3 17.6 46.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000034825 Nrip3 ENSMUST00000041460 ENSMUSP00000044116 TRANSLATION protein_coding - - 1 251.0 0.0 1.3 2.2 46.3 0.0 -4,-7 0.2225 4 12.288 MINOR ENSMUSG00000050973 Gdpgp1 ENSMUST00000062915 ENSMUSP00000061808 TRANSLATION protein_coding - CCDS39995.1 1 386.0 12.0 0.32 9.9 0.0 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000062712 Or2j6 ENSMUST00000217032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062712 Or2j6 ENSMUST00000216053 ENSMUSP00000150424 TRANSLATION protein_coding - CCDS21975.1 5 304.0 0.0 1.0 8.8 155.5 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062712 Or2j6 ENSMUST00000217167 ENSMUSP00000149942 TRANSLATION protein_coding - CCDS21975.1 - 304.0 0.0 1.0 8.8 155.5 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062712 Or2j6 ENSMUST00000080153 ENSMUSP00000079048 TRANSLATION protein_coding - CCDS21975.1 5 304.0 0.0 1.0 8.8 155.5 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109166 Gm5890 ENSMUST00000190145 ENSMUSP00000146622 TRANSLATION protein_coding - - 1 305.0 17.0 1.0 0.0 233.8 0.0 -4,-5 0.8066 - 18.0 PRINCIPAL:1 ENSMUSG00000004540 Psg17 ENSMUST00000004655 ENSMUSP00000004655 TRANSLATION protein_coding - CCDS20878.1 1 475.0 0.0 3.0 0.4 146.9 0.0 0,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030523 Trpm1 ENSMUST00000206000 - NO_TRANSLATION retained_intron ENSMUSG00000030523 Trpm1 ENSMUST00000206848 ENSMUSP00000146073 TRANSLATION protein_coding stop - 3 153.0 0.0 2.99 0.0 45.9 1.0 1,-3 0.0033 - -2.0 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000205434 - NO_TRANSLATION retained_intron ENSMUSG00000030523 Trpm1 ENSMUST00000205728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030523 Trpm1 ENSMUST00000177102 ENSMUSP00000134947 TRANSLATION protein_coding - CCDS39975.2 1 542.0 0.0 8.724 0.0 0.0 0.0 -4,-6 0.0217 - 0.0 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000205994 ENSMUSP00000146323 TRANSLATION protein_coding start/stop - 1 95.0 0.0 1.764 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000205731 ENSMUSP00000145776 TRANSLATION protein_coding - - 1 443.0 0.0 6.474 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000205939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030523 Trpm1 ENSMUST00000206453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030523 Trpm1 ENSMUST00000206107 ENSMUSP00000146257 TRANSLATION protein_coding stop - 3 28.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0025 - -2.0 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000205610 - NO_TRANSLATION retained_intron ENSMUSG00000030523 Trpm1 ENSMUST00000206706 ENSMUSP00000146265 TRANSLATION protein_coding - - 1 426.0 0.0 5.974 0.0 0.0 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000205684 ENSMUSP00000146163 TRANSLATION protein_coding start/stop - 1 41.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000205960 - NO_TRANSLATION retained_intron ENSMUSG00000030523 Trpm1 ENSMUST00000206277 ENSMUSP00000146226 TRANSLATION protein_coding - - 5 1628.0 0.0 17.9485 0.1 161.0 9.0 -4,-2 0.7309 - 8.0 ALTERNATIVE:2 ENSMUSG00000030523 Trpm1 ENSMUST00000205690 ENSMUSP00000145814 TRANSLATION protein_coding stop - 3 19.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0235 - -2.0 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000206314 ENSMUSP00000145593 TRANSLATION protein_coding - - 1 738.0 0.0 6.67 0.0 88.1 3.0 -4,-2 0.0011 - 2.0 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000206740 - NO_TRANSLATION retained_intron ENSMUSG00000030523 Trpm1 ENSMUST00000206263 ENSMUSP00000146140 TRANSLATION protein_coding - - 5 1506.0 0.0 16.2755 0.0 161.6 9.0 -4,-6 0.298 - 4.652 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000205466 - NO_TRANSLATION retained_intron ENSMUSG00000030523 Trpm1 ENSMUST00000085222 ENSMUSP00000082318 TRANSLATION protein_coding - CCDS21332.2 1 1622.0 0.0 17.7505 0.1 161.6 9.0 -4,-2 1.0 - 7.604 PRINCIPAL:2 ENSMUSG00000030523 Trpm1 ENSMUST00000206049 ENSMUSP00000145995 TRANSLATION protein_coding start - 1 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0235 - -2.0 MINOR ENSMUSG00000030523 Trpm1 ENSMUST00000205348 ENSMUSP00000145708 TRANSLATION nonsense_mediated_decay - - 1 461.0 0.0 7.889 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000060105 Or56b1b ENSMUST00000075595 ENSMUSP00000075025 TRANSLATION protein_coding - CCDS21719.1 - 318.0 0.0 1.0 8.8 234.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034660 Galp ENSMUST00000037553 ENSMUSP00000037408 TRANSLATION protein_coding - CCDS20771.1 1 117.0 0.0 0.0 0.1 0.0 0.0 3,-2 0.9486 - 0.0 PRINCIPAL:1 ENSMUSG00000034660 Galp ENSMUST00000130076 ENSMUSP00000146615 TRANSLATION protein_coding start/stop - 1 49.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.028 - -2.0 MINOR ENSMUSG00000092297 Vmn1r258 ENSMUST00000174451 ENSMUSP00000134516 TRANSLATION protein_coding - CCDS71911.1 - 314.0 0.0 0.0 0.0 59.4 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096029 Or56a3 ENSMUST00000215704 ENSMUSP00000149116 TRANSLATION protein_coding - CCDS21640.1 5 315.0 0.0 1.0 11.8 246.4 5.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096029 Or56a3 ENSMUST00000214328 ENSMUSP00000150668 TRANSLATION protein_coding - CCDS21640.1 5 315.0 0.0 1.0 11.8 246.4 5.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096029 Or56a3 ENSMUST00000098158 ENSMUSP00000095761 TRANSLATION protein_coding - CCDS21640.1 - 315.0 0.0 1.0 11.8 246.4 5.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096029 Or56a3 ENSMUST00000214738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038973 Cldnd2 ENSMUST00000206839 ENSMUSP00000145638 TRANSLATION protein_coding - CCDS39929.1 2 167.0 0.0 1.43 5.7 62.5 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038973 Cldnd2 ENSMUST00000040227 ENSMUSP00000037980 TRANSLATION protein_coding - CCDS39929.1 1 167.0 0.0 1.43 5.7 62.5 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000078080 Or51f1e ENSMUST00000104881 ENSMUSP00000100476 TRANSLATION protein_coding - CCDS40053.1 - 318.0 0.0 1.0 6.2 362.4 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047767 Atg16l2 ENSMUST00000134531 - NO_TRANSLATION retained_intron ENSMUSG00000047767 Atg16l2 ENSMUST00000209093 - NO_TRANSLATION retained_intron ENSMUSG00000047767 Atg16l2 ENSMUST00000124617 - NO_TRANSLATION retained_intron ENSMUSG00000047767 Atg16l2 ENSMUST00000123970 - NO_TRANSLATION retained_intron ENSMUSG00000047767 Atg16l2 ENSMUST00000140059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047767 Atg16l2 ENSMUST00000139609 ENSMUSP00000117387 TRANSLATION nonsense_mediated_decay - - 5 403.0 0.0 1.648 0.0 152.5 0.0 -4,-6 0.0135 - -2.0 MINOR ENSMUSG00000047767 Atg16l2 ENSMUST00000207740 ENSMUSP00000146933 TRANSLATION nonsense_mediated_decay start - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047767 Atg16l2 ENSMUST00000207121 ENSMUSP00000146572 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000047767 Atg16l2 ENSMUST00000122116 ENSMUSP00000113320 TRANSLATION protein_coding - - 1 602.0 0.0 7.63 3.1 167.7 0.0 -4,-6 0.5518 2 12.778 MINOR ENSMUSG00000047767 Atg16l2 ENSMUST00000143630 ENSMUSP00000117029 TRANSLATION nonsense_mediated_decay - - 5 403.0 0.0 1.648 0.0 152.5 0.0 -4,-6 0.0135 2 -2.0 MINOR ENSMUSG00000047767 Atg16l2 ENSMUST00000131988 - NO_TRANSLATION retained_intron ENSMUSG00000047767 Atg16l2 ENSMUST00000123835 - NO_TRANSLATION retained_intron ENSMUSG00000047767 Atg16l2 ENSMUST00000140553 ENSMUSP00000116414 TRANSLATION nonsense_mediated_decay - - 3 81.0 0.0 0.0 0.0 46.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000047767 Atg16l2 ENSMUST00000153327 - NO_TRANSLATION retained_intron ENSMUSG00000047767 Atg16l2 ENSMUST00000151297 - NO_TRANSLATION retained_intron ENSMUSG00000047767 Atg16l2 ENSMUST00000120267 ENSMUSP00000112500 TRANSLATION protein_coding - CCDS52329.1 1 623.0 0.0 7.63 6.4 167.7 0.0 -4,-6 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000047767 Atg16l2 ENSMUST00000146445 - NO_TRANSLATION retained_intron ENSMUSG00000117744 Vmn1r59 ENSMUST00000237385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000117744 Vmn1r59 ENSMUST00000074132 ENSMUSP00000073768 TRANSLATION protein_coding - CCDS20763.1 - 310.0 0.0 0.0 0.0 54.4 0.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000117744 Vmn1r59 ENSMUST00000236678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052214 Opa3 ENSMUST00000063976 ENSMUSP00000069965 TRANSLATION protein_coding - CCDS20894.1 1 179.0 0.0 1.4 2.1 156.2 0.0 -4,-1 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000052214 Opa3 ENSMUST00000161711 ENSMUSP00000145909 TRANSLATION protein_coding - - 2 208.0 0.0 1.0 0.1 141.4 0.0 -4,-2 0.0046 - 9.396 MINOR ENSMUSG00000052214 Opa3 ENSMUST00000206335 - NO_TRANSLATION retained_intron ENSMUSG00000058014 Or5p76 ENSMUST00000216919 ENSMUSP00000151167 TRANSLATION protein_coding - CCDS21717.1 5 314.0 0.0 1.0 10.4 182.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058014 Or5p76 ENSMUST00000078933 ENSMUSP00000077963 TRANSLATION protein_coding - CCDS21717.1 - 314.0 0.0 1.0 10.4 182.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066850 Vmn1r65 ENSMUST00000086338 ENSMUSP00000083520 TRANSLATION protein_coding - CCDS20767.1 1 332.0 0.0 0.0 0.0 49.5 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000066850 Vmn1r65 ENSMUST00000227656 - NO_TRANSLATION retained_intron ENSMUSG00000030435 U2af2 ENSMUST00000209099 ENSMUSP00000147013 TRANSLATION protein_coding - CCDS57476.1 1 475.0 0.0 8.3 15.1 111.9 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:4 ENSMUSG00000030435 U2af2 ENSMUST00000207498 ENSMUSP00000147246 TRANSLATION nonsense_mediated_decay start - 5 95.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030435 U2af2 ENSMUST00000207926 - NO_TRANSLATION retained_intron ENSMUSG00000030435 U2af2 ENSMUST00000207523 - NO_TRANSLATION retained_intron ENSMUSG00000030435 U2af2 ENSMUST00000207960 - NO_TRANSLATION retained_intron ENSMUSG00000030435 U2af2 ENSMUST00000208419 - NO_TRANSLATION retained_intron ENSMUSG00000030435 U2af2 ENSMUST00000207097 ENSMUSP00000147032 TRANSLATION nonsense_mediated_decay - - 3 111.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000030435 U2af2 ENSMUST00000005041 ENSMUSP00000005041 TRANSLATION protein_coding - CCDS85208.1 1 471.0 0.0 8.3 15.1 111.9 0.0 -4,-5 0.9914 11 12.0 ALTERNATIVE:1 ENSMUSG00000041571 Selenow ENSMUST00000044355 ENSMUSP00000038943 TRANSLATION protein_coding - CCDS39778.1 1 88.0 0.0 2.66 16.0 48.0 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030763 Lcmt1 ENSMUST00000033025 ENSMUSP00000033025 TRANSLATION protein_coding - CCDS40118.1 1 332.0 15.0 9.71 8.8 130.8 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:4 ENSMUSG00000030763 Lcmt1 ENSMUST00000206488 - NO_TRANSLATION retained_intron ENSMUSG00000030763 Lcmt1 ENSMUST00000205880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030763 Lcmt1 ENSMUST00000206721 ENSMUSP00000146184 TRANSLATION protein_coding stop - 3 121.0 1.0 1.33 0.0 0.0 0.0 1,-4 0.0024 1 -2.0 MINOR ENSMUSG00000030763 Lcmt1 ENSMUST00000206727 - NO_TRANSLATION retained_intron ENSMUSG00000030763 Lcmt1 ENSMUST00000206574 ENSMUSP00000145539 TRANSLATION protein_coding - - 5 332.0 15.0 9.71 8.8 130.8 0.0 -4,-5 0.8661 11 15.0 ALTERNATIVE:1 ENSMUSG00000052273 Dnah3 ENSMUST00000213993 - NO_TRANSLATION retained_intron ENSMUSG00000052273 Dnah3 ENSMUST00000208701 ENSMUSP00000146733 TRANSLATION protein_coding start - 1 978.0 0.0 4.165 0.0 1029.4 0.0 -4,-5 0.0643 4 -2.0 MINOR ENSMUSG00000052273 Dnah3 ENSMUST00000046993 ENSMUSP00000042857 TRANSLATION protein_coding - - 5 4083.0 65.0 30.901 0.0 2592.9 0.0 -4,-6 0.3893 25 16.608 MINOR ENSMUSG00000052273 Dnah3 ENSMUST00000208910 ENSMUSP00000146748 TRANSLATION protein_coding start - 1 351.0 12.0 3.43 0.0 206.4 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000052273 Dnah3 ENSMUST00000213149 ENSMUSP00000151144 TRANSLATION nonsense_mediated_decay start - 5 134.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000052273 Dnah3 ENSMUST00000209154 ENSMUSP00000146895 TRANSLATION protein_coding - - 5 4072.0 65.0 31.099 5.1 2609.5 0.0 -4,-6 1.0 25 20.0 PRINCIPAL:1 ENSMUSG00000053158 Fes ENSMUST00000206479 ENSMUSP00000145917 TRANSLATION nonsense_mediated_decay - - 2 173.0 0.0 2.3 0.0 32.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053158 Fes ENSMUST00000206735 ENSMUSP00000146058 TRANSLATION protein_coding start - 5 75.0 4.0 1.83 0.0 97.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053158 Fes ENSMUST00000205617 ENSMUSP00000145612 TRANSLATION nonsense_mediated_decay - - 1 360.0 0.0 5.3775 0.0 28.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053158 Fes ENSMUST00000206002 - NO_TRANSLATION retained_intron ENSMUSG00000053158 Fes ENSMUST00000206728 ENSMUSP00000146041 TRANSLATION protein_coding - - 1 820.0 18.0 17.0375 24.8 409.7 0.0 -4,-5 0.8779 9 18.0 ALTERNATIVE:1 ENSMUSG00000053158 Fes ENSMUST00000206539 ENSMUSP00000146078 TRANSLATION nonsense_mediated_decay start - 2 41.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000053158 Fes ENSMUST00000206271 - NO_TRANSLATION retained_intron ENSMUSG00000053158 Fes ENSMUST00000206698 ENSMUSP00000145937 TRANSLATION protein_coding stop - 3 95.0 0.0 0.8 0.0 32.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053158 Fes ENSMUST00000080932 ENSMUSP00000079733 TRANSLATION protein_coding - CCDS39999.1 1 822.0 18.0 17.0375 24.8 409.7 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:4 ENSMUSG00000053158 Fes ENSMUST00000206744 ENSMUSP00000146281 TRANSLATION nonsense_mediated_decay - - 1 177.0 0.0 2.8 0.0 32.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000007944 Ttc9b ENSMUST00000008088 ENSMUSP00000008088 TRANSLATION protein_coding - CCDS21028.1 1 239.0 0.0 0.56 8.2 24.5 0.0 -2,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000030704 Rab6a ENSMUST00000123960 - NO_TRANSLATION retained_intron ENSMUSG00000030704 Rab6a ENSMUST00000032946 ENSMUSP00000032946 TRANSLATION protein_coding - CCDS21503.1 1 208.0 22.0 5.66 33.7 197.9 0.0 -4,-7 0.9999 6 18.0 ALTERNATIVE:1 ENSMUSG00000030704 Rab6a ENSMUST00000107048 ENSMUSP00000102663 TRANSLATION protein_coding - - 3 175.0 15.0 4.58 12.8 164.8 0.0 -4,-5 0.1647 6 6.616 MINOR ENSMUSG00000030704 Rab6a ENSMUST00000098252 ENSMUSP00000095852 TRANSLATION protein_coding - CCDS52323.1 1 208.0 22.0 5.66 33.7 198.1 0.0 -4,-7 1.0 6 18.0 PRINCIPAL:4 ENSMUSG00000047884 Klk9 ENSMUST00000005891 ENSMUSP00000005891 TRANSLATION protein_coding - CCDS39937.1 1 251.0 19.0 4.0 7.2 222.7 0.0 3,-2 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000100254 Trpc2 ENSMUST00000124189 ENSMUSP00000116934 TRANSLATION protein_coding,RT - CCDS52333.1 1 890.0 0.0 6.415 1.1 166.0 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000074166 AW146154 ENSMUST00000205634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074166 AW146154 ENSMUST00000205995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074166 AW146154 ENSMUST00000098509 ENSMUSP00000096109 TRANSLATION protein_coding - CCDS52211.1 1 468.0 51.0 1.3 0.1 307.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000074166 AW146154 ENSMUST00000205572 - NO_TRANSLATION retained_intron ENSMUSG00000064307 Lrrc51 ENSMUST00000106967 ENSMUSP00000102580 TRANSLATION protein_coding - - 3 159.0 0.0 4.4 0.0 27.5 0.0 -4,-5 0.0569 1 10.002 MINOR ENSMUSG00000064307 Lrrc51 ENSMUST00000130155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064307 Lrrc51 ENSMUST00000078448 ENSMUSP00000077543 TRANSLATION protein_coding - CCDS52332.1 1 192.0 0.0 5.4 8.0 27.5 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000064307 Lrrc51 ENSMUST00000106963 ENSMUSP00000102576 TRANSLATION protein_coding - CCDS52331.1 2 146.0 0.0 4.0 1.0 27.5 0.0 -4,-5 0.1508 1 9.198 MINOR ENSMUSG00000064307 Lrrc51 ENSMUST00000098236 ENSMUSP00000095838 TRANSLATION protein_coding - CCDS52331.1 1 146.0 0.0 4.0 1.0 27.5 0.0 -4,-5 0.1508 1 9.198 MINOR ENSMUSG00000064307 Lrrc51 ENSMUST00000106968 ENSMUSP00000102581 TRANSLATION protein_coding - CCDS52332.1 2 192.0 0.0 5.4 8.0 27.5 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000064307 Lrrc51 ENSMUST00000106966 ENSMUSP00000102579 TRANSLATION protein_coding - CCDS52332.1 2 192.0 0.0 5.4 8.0 27.5 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000064307 Lrrc51 ENSMUST00000106964 ENSMUSP00000102577 TRANSLATION protein_coding - CCDS52331.1 2 146.0 0.0 4.0 1.0 27.5 0.0 -4,-5 0.1508 1 9.198 MINOR ENSMUSG00000064307 Lrrc51 ENSMUST00000163903 ENSMUSP00000129333 TRANSLATION protein_coding - CCDS52331.1 1 146.0 0.0 4.0 1.0 27.5 0.0 -4,-5 0.1508 1 9.198 MINOR ENSMUSG00000064307 Lrrc51 ENSMUST00000106965 ENSMUSP00000102578 TRANSLATION protein_coding - - 3 176.0 0.0 4.2 0.0 27.5 0.0 -4,-5 0.0012 1 9.6 MINOR ENSMUSG00000042219 Or51m1 ENSMUST00000106863 ENSMUSP00000102476 TRANSLATION protein_coding - CCDS21597.1 - 319.0 0.0 1.0 2.5 378.3 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030729 Pgm2l1 ENSMUST00000054436 ENSMUSP00000054782 TRANSLATION nonsense_mediated_decay - CCDS40035.1 2 621.0 16.0 13.05 20.7 254.7 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000030729 Pgm2l1 ENSMUST00000208158 - NO_TRANSLATION retained_intron ENSMUSG00000030729 Pgm2l1 ENSMUST00000084935 ENSMUSP00000081998 TRANSLATION protein_coding - CCDS40035.1 1 621.0 16.0 13.05 20.7 254.7 0.0 -4,-5 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000030729 Pgm2l1 ENSMUST00000162108 ENSMUSP00000124851 TRANSLATION nonsense_mediated_decay - - 2 253.0 6.0 5.3 0.0 119.0 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000003421 Nosip ENSMUST00000107829 ENSMUSP00000103460 TRANSLATION protein_coding - CCDS52242.1 1 276.0 2.0 0.0 0.0 177.4 0.0 -4,-5 0.1167 10 8.0 MINOR ENSMUSG00000003421 Nosip ENSMUST00000210998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003421 Nosip ENSMUST00000209901 - NO_TRANSLATION retained_intron ENSMUSG00000003421 Nosip ENSMUST00000003513 ENSMUSP00000003513 TRANSLATION protein_coding - CCDS21228.1 1 301.0 2.0 0.0 10.6 177.4 0.0 -4,-5 1.0 11 11.0 PRINCIPAL:1 ENSMUSG00000003421 Nosip ENSMUST00000210520 ENSMUSP00000147796 TRANSLATION protein_coding - - 5 151.0 0.0 0.0 0.0 177.4 0.0 -4,-5 0.0243 4 6.0 MINOR ENSMUSG00000003421 Nosip ENSMUST00000210668 - NO_TRANSLATION retained_intron ENSMUSG00000003421 Nosip ENSMUST00000209243 ENSMUSP00000147792 TRANSLATION nonsense_mediated_decay start - 5 167.0 0.0 0.0 0.0 124.3 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000003421 Nosip ENSMUST00000211465 ENSMUSP00000148148 TRANSLATION protein_coding stop - 2 237.0 1.0 0.0 0.0 177.4 0.0 -4,-5 0.0297 8 -2.0 MINOR ENSMUSG00000003421 Nosip ENSMUST00000209308 - NO_TRANSLATION retained_intron ENSMUSG00000003421 Nosip ENSMUST00000210088 ENSMUSP00000148045 TRANSLATION protein_coding stop - 3 221.0 0.0 0.0 0.0 177.4 0.0 -4,-5 0.0283 5 -2.0 MINOR ENSMUSG00000095936 Zscan4e ENSMUST00000166753 ENSMUSP00000147491 TRANSLATION protein_coding - - 5 505.0 15.0 0.32 0.0 110.6 0.0 -4,-5 0.7922 - 18.0 PRINCIPAL:1 ENSMUSG00000095936 Zscan4e ENSMUST00000249317 ENSMUSP00000159691 TRANSLATION protein_coding - - - 505.0 15.0 0.32 0.0 110.6 0.0 -4,-5 0.7922 - 18.0 PRINCIPAL:1 ENSMUSG00000095936 Zscan4e ENSMUST00000249318 - NO_TRANSLATION retained_intron ENSMUSG00000025500 Lmntd2 ENSMUST00000170841 ENSMUSP00000130905 TRANSLATION protein_coding - - 1 674.0 0.0 1.1 0.0 39.1 0.0 -4,-5 0.8092 2 6.0 PRINCIPAL:4 ENSMUSG00000025500 Lmntd2 ENSMUST00000026573 ENSMUSP00000026573 TRANSLATION protein_coding - CCDS40181.1 1 664.0 0.0 1.1 0.4 39.1 0.0 -4,-5 0.6512 2 6.0 ALTERNATIVE:2 ENSMUSG00000091651 Vmn2r36 ENSMUST00000170402 ENSMUSP00000132457 TRANSLATION protein_coding - CCDS57481.1 5 852.0 4.0 2.2 0.1 393.7 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030880 Polr3e ENSMUST00000209014 - NO_TRANSLATION retained_intron ENSMUSG00000030880 Polr3e ENSMUST00000033173 ENSMUSP00000033173 TRANSLATION protein_coding - CCDS21797.1 1 710.0 0.0 13.35 12.5 525.3 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000030880 Polr3e ENSMUST00000207481 ENSMUSP00000146970 TRANSLATION protein_coding - CCDS52383.1 1 684.0 0.0 12.6 1.5 437.9 0.0 -4,-5 0.1678 12 5.385 MINOR ENSMUSG00000030880 Polr3e ENSMUST00000106483 ENSMUSP00000102092 TRANSLATION protein_coding - CCDS21797.1 5 710.0 0.0 13.35 12.5 525.3 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000030671 Pde3b ENSMUST00000032909 ENSMUSP00000032909 TRANSLATION protein_coding - CCDS21760.1 1 1099.0 6.0 5.27 0.0 206.1 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000030671 Pde3b ENSMUST00000140007 - NO_TRANSLATION retained_intron ENSMUSG00000030671 Pde3b ENSMUST00000210411 - NO_TRANSLATION retained_intron ENSMUSG00000030671 Pde3b ENSMUST00000149455 - NO_TRANSLATION retained_intron ENSMUSG00000055541 Lair1 ENSMUST00000086401 ENSMUSP00000083589 TRANSLATION protein_coding - CCDS51969.1 1 263.0 0.0 1.0 0.1 0.0 0.0 3,-2 1.0 2 6.0 PRINCIPAL:2 ENSMUSG00000055541 Lair1 ENSMUST00000119711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055541 Lair1 ENSMUST00000136616 ENSMUSP00000122037 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0701 - -2.0 MINOR ENSMUSG00000055541 Lair1 ENSMUST00000131126 ENSMUSP00000121738 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0701 - -2.0 MINOR ENSMUSG00000055541 Lair1 ENSMUST00000068865 ENSMUSP00000070712 TRANSLATION protein_coding - CCDS20729.1 1 153.0 0.0 0.0 0.0 0.0 0.0 0,-5 0.1827 2 0.0 MINOR ENSMUSG00000055541 Lair1 ENSMUST00000149395 ENSMUSP00000116800 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0701 - -2.0 MINOR ENSMUSG00000055541 Lair1 ENSMUST00000108600 ENSMUSP00000104241 TRANSLATION protein_coding - CCDS80654.1 1 224.0 0.0 1.0 0.0 0.0 0.0 3,-2 0.4516 2 6.0 ALTERNATIVE:2 ENSMUSG00000055541 Lair1 ENSMUST00000206445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055541 Lair1 ENSMUST00000205296 ENSMUSP00000145940 TRANSLATION protein_coding - CCDS85202.1 1 114.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.2846 2 0.0 MINOR ENSMUSG00000008193 Spib ENSMUST00000035323 ENSMUSP00000035539 TRANSLATION protein_coding - CCDS21209.1 1 267.0 0.0 1.04 8.3 76.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000008193 Spib ENSMUST00000098483 ENSMUSP00000096084 TRANSLATION protein_coding stop - 5 284.0 0.0 1.04 0.1 76.4 0.0 -4,-5 0.103 - -2.0 MINOR ENSMUSG00000008193 Spib ENSMUST00000205506 ENSMUSP00000145968 TRANSLATION protein_coding stop - 5 267.0 0.0 1.04 8.3 76.4 0.0 -4,-5 0.8378 - -2.0 MINOR ENSMUSG00000044562 Rasip1 ENSMUST00000057927 ENSMUSP00000062429 TRANSLATION protein_coding - CCDS21256.1 1 961.0 0.0 1.265 0.4 126.6 0.0 -4,-6 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000073967 Or51d1 ENSMUST00000215423 ENSMUSP00000150621 TRANSLATION protein_coding - CCDS21542.1 5 322.0 0.0 1.0 4.1 376.3 7.0 -3,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073967 Or51d1 ENSMUST00000098218 ENSMUSP00000095821 TRANSLATION protein_coding - CCDS21542.1 - 322.0 0.0 1.0 4.1 376.3 7.0 -3,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040498 Igsf23 ENSMUST00000043440 ENSMUSP00000047914 TRANSLATION protein_coding - CCDS52065.1 1 239.0 0.0 0.9 0.0 0.0 1.0 -3,-5 0.3679 2 6.0 ALTERNATIVE:2 ENSMUSG00000040498 Igsf23 ENSMUST00000208974 ENSMUSP00000147077 TRANSLATION protein_coding - - 1 201.0 0.0 0.9 0.0 0.0 1.0 -4,-5 0.6932 2 6.0 PRINCIPAL:2 ENSMUSG00000040498 Igsf23 ENSMUST00000207513 - NO_TRANSLATION retained_intron ENSMUSG00000040498 Igsf23 ENSMUST00000208210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073978 Or52b4i ENSMUST00000210064 ENSMUSP00000147923 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 12.5 346.7 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096679 Or5p73 ENSMUST00000217616 ENSMUSP00000150971 TRANSLATION protein_coding - CCDS21716.1 - 330.0 0.0 1.0 0.0 167.5 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000109398 Gm3854 ENSMUST00000207173 ENSMUSP00000148053 TRANSLATION protein_coding - - 5 495.0 35.0 1.0 0.0 264.1 0.0 -4,-5 0.83 - 18.0 PRINCIPAL:1 ENSMUSG00000109398 Gm3854 ENSMUST00000208865 - NO_TRANSLATION retained_intron ENSMUSG00000033429 Mcee ENSMUST00000206882 ENSMUSP00000145591 TRANSLATION protein_coding - - 2 32.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - 0.0 MINOR ENSMUSG00000033429 Mcee ENSMUST00000206138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033429 Mcee ENSMUST00000037205 ENSMUSP00000047855 TRANSLATION protein_coding - CCDS21334.1 1 178.0 4.0 3.5 5.8 45.6 0.0 -2,2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000033429 Mcee ENSMUST00000206194 ENSMUSP00000146220 TRANSLATION protein_coding - - 2 124.0 2.0 2.5 1.1 28.3 0.0 -2,2 0.0251 2 9.77 MINOR ENSMUSG00000040212 Emp3 ENSMUST00000038876 ENSMUSP00000037289 TRANSLATION protein_coding - CCDS21270.1 1 163.0 0.0 4.83 18.5 152.2 4.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040212 Emp3 ENSMUST00000210937 - NO_TRANSLATION retained_intron ENSMUSG00000040212 Emp3 ENSMUST00000164119 ENSMUSP00000132519 TRANSLATION protein_coding - CCDS21270.1 1 163.0 0.0 4.83 18.5 152.2 4.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040212 Emp3 ENSMUST00000210297 ENSMUSP00000147800 TRANSLATION protein_coding - CCDS21270.1 3 163.0 0.0 4.83 18.5 152.2 4.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040212 Emp3 ENSMUST00000210939 ENSMUSP00000148129 TRANSLATION protein_coding stop - 3 63.0 0.0 1.75 0.0 57.9 2.0 0,-4 0.0033 - -2.0 MINOR ENSMUSG00000045989 4930451I11Rik ENSMUST00000061695 ENSMUSP00000049614 TRANSLATION protein_coding - CCDS52402.1 1 111.0 0.0 1.08 1.8 0.0 0.0 2,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000045989 4930451I11Rik ENSMUST00000205907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045989 4930451I11Rik ENSMUST00000205320 ENSMUSP00000146298 TRANSLATION protein_coding start - 3 90.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0498 - -2.0 MINOR ENSMUSG00000054342 Kcnn4 ENSMUST00000205626 ENSMUSP00000145873 TRANSLATION protein_coding - - 5 104.0 0.0 2.3 0.0 79.2 3.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000054342 Kcnn4 ENSMUST00000205428 ENSMUSP00000146012 TRANSLATION protein_coding - CCDS20948.1 1 425.0 0.0 7.85 5.9 271.4 5.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000054342 Kcnn4 ENSMUST00000205881 - NO_TRANSLATION retained_intron ENSMUSG00000054342 Kcnn4 ENSMUST00000206910 - NO_TRANSLATION retained_intron ENSMUSG00000054342 Kcnn4 ENSMUST00000171904 ENSMUSP00000133065 TRANSLATION protein_coding - CCDS20948.1 1 425.0 0.0 7.85 5.9 271.4 5.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000062553 Or2d3c ENSMUST00000215468 ENSMUSP00000150392 TRANSLATION protein_coding - - 5 307.0 0.0 1.0 14.7 194.5 0.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057092 Fxyd3 ENSMUST00000169424 - NO_TRANSLATION retained_intron ENSMUSG00000057092 Fxyd3 ENSMUST00000165862 - NO_TRANSLATION retained_intron ENSMUSG00000057092 Fxyd3 ENSMUST00000167369 ENSMUSP00000130245 TRANSLATION protein_coding - CCDS21125.1 1 88.0 0.0 1.976 14.6 94.5 1.0 3,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000057092 Fxyd3 ENSMUST00000186839 - NO_TRANSLATION retained_intron ENSMUSG00000057092 Fxyd3 ENSMUST00000171359 ENSMUSP00000128610 TRANSLATION protein_coding stop - 3 71.0 0.0 1.646 1.1 94.5 1.0 3,-1 0.1239 1 -2.0 MINOR ENSMUSG00000057092 Fxyd3 ENSMUST00000165465 - NO_TRANSLATION retained_intron ENSMUSG00000057092 Fxyd3 ENSMUST00000169313 - NO_TRANSLATION retained_intron ENSMUSG00000057092 Fxyd3 ENSMUST00000165265 - NO_TRANSLATION retained_intron ENSMUSG00000057092 Fxyd3 ENSMUST00000170456 - NO_TRANSLATION retained_intron ENSMUSG00000057092 Fxyd3 ENSMUST00000186929 - NO_TRANSLATION retained_intron ENSMUSG00000057092 Fxyd3 ENSMUST00000072331 ENSMUSP00000144534 TRANSLATION protein_coding - - 2 32.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - 2.52 MINOR ENSMUSG00000059206 Vmn1r71 ENSMUST00000228098 ENSMUSP00000154381 TRANSLATION protein_coding - CCDS20796.1 - 307.0 0.0 0.6 0.4 93.0 6.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059206 Vmn1r71 ENSMUST00000227940 ENSMUSP00000154234 TRANSLATION protein_coding - CCDS20796.1 - 307.0 0.0 0.6 0.4 93.0 6.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059206 Vmn1r71 ENSMUST00000228561 ENSMUSP00000153870 TRANSLATION protein_coding - - - 241.0 0.0 0.0 0.0 88.5 4.0 -4,-6 0.0155 - 5.712 MINOR ENSMUSG00000059206 Vmn1r71 ENSMUST00000079113 ENSMUSP00000078116 TRANSLATION protein_coding - CCDS20796.1 - 307.0 0.0 0.6 0.4 93.0 6.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059206 Vmn1r71 ENSMUST00000228248 ENSMUSP00000154420 TRANSLATION protein_coding - CCDS20796.1 - 307.0 0.0 0.6 0.4 93.0 6.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059206 Vmn1r71 ENSMUST00000228374 ENSMUSP00000154714 TRANSLATION protein_coding - CCDS20796.1 - 307.0 0.0 0.6 0.4 93.0 6.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059206 Vmn1r71 ENSMUST00000228526 ENSMUSP00000154779 TRANSLATION protein_coding - CCDS20796.1 - 307.0 0.0 0.6 0.4 93.0 6.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059206 Vmn1r71 ENSMUST00000227702 ENSMUSP00000154115 TRANSLATION protein_coding - CCDS20796.1 - 307.0 0.0 0.6 0.4 93.0 6.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059206 Vmn1r71 ENSMUST00000227003 ENSMUSP00000154108 TRANSLATION protein_coding - CCDS20796.1 - 307.0 0.0 0.6 0.4 93.0 6.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059206 Vmn1r71 ENSMUST00000226874 ENSMUSP00000154058 TRANSLATION protein_coding - CCDS20796.1 - 307.0 0.0 0.6 0.4 93.0 6.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000061877 BC048679 ENSMUST00000207871 ENSMUSP00000147131 TRANSLATION protein_coding - - 1 166.0 0.0 0.0 0.1 0.0 0.0 -4,-7 0.5691 - 0.0 PRINCIPAL:2 ENSMUSG00000061877 BC048679 ENSMUST00000144156 ENSMUSP00000120616 TRANSLATION protein_coding - CCDS57558.1 1 172.0 0.0 0.0 0.1 0.0 0.0 -4,-7 0.3096 - 0.0 ALTERNATIVE:2 ENSMUSG00000061877 BC048679 ENSMUST00000073406 ENSMUSP00000073114 TRANSLATION protein_coding - CCDS40008.1 1 115.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1973 - 0.0 ALTERNATIVE:2 ENSMUSG00000095632 Vmn1r175 ENSMUST00000228383 ENSMUSP00000154170 TRANSLATION protein_coding - CCDS52135.1 - 304.0 0.0 0.0 0.4 73.5 4.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095632 Vmn1r175 ENSMUST00000166141 ENSMUSP00000126357 TRANSLATION protein_coding - CCDS52135.1 - 304.0 0.0 0.0 0.4 73.5 4.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000035713 Usp35 ENSMUST00000168435 ENSMUSP00000137927 TRANSLATION protein_coding - CCDS59734.1 5 1009.0 4.0 7.2 1.1 144.1 0.0 -4,-6 1.0 17 17.0 PRINCIPAL:1 ENSMUSG00000035713 Usp35 ENSMUST00000139582 ENSMUSP00000137726 TRANSLATION protein_coding - CCDS59734.1 5 1009.0 4.0 7.2 1.1 144.1 0.0 -4,-6 1.0 17 17.0 PRINCIPAL:1 ENSMUSG00000035713 Usp35 ENSMUST00000181651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035713 Usp35 ENSMUST00000181354 - NO_TRANSLATION retained_intron ENSMUSG00000035713 Usp35 ENSMUST00000181351 - NO_TRANSLATION retained_intron ENSMUSG00000035713 Usp35 ENSMUST00000180476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045868 Gvin1 ENSMUST00000183409 ENSMUSP00000138950 TRANSLATION protein_coding - CCDS21663.1 1 2427.0 0.0 0.0 1.5 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000045868 Gvin1 ENSMUST00000006667 ENSMUSP00000006667 TRANSLATION protein_coding - CCDS21663.1 1 2427.0 0.0 0.0 1.5 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000066828 Vmn2r37 ENSMUST00000072787 ENSMUSP00000072566 TRANSLATION protein_coding - CCDS57490.1 1 802.0 0.0 1.97 0.1 360.9 0.0 1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000003863 Ppfia3 ENSMUST00000211067 ENSMUSP00000148200 TRANSLATION protein_coding - CCDS52246.1 5 1194.0 0.0 10.77 7.1 100.8 0.0 -4,-5 1.0 33 14.0 PRINCIPAL:1 ENSMUSG00000003863 Ppfia3 ENSMUST00000210248 ENSMUSP00000147584 TRANSLATION protein_coding start - 5 1034.0 0.0 9.1 0.0 100.8 0.0 -4,-5 0.1171 28 -2.0 MINOR ENSMUSG00000003863 Ppfia3 ENSMUST00000003961 ENSMUSP00000003961 TRANSLATION protein_coding - CCDS52246.1 1 1194.0 0.0 10.77 7.1 100.8 0.0 -4,-5 1.0 33 14.0 PRINCIPAL:1 ENSMUSG00000003863 Ppfia3 ENSMUST00000209424 - NO_TRANSLATION retained_intron ENSMUSG00000003863 Ppfia3 ENSMUST00000210586 - NO_TRANSLATION retained_intron ENSMUSG00000003863 Ppfia3 ENSMUST00000210844 - NO_TRANSLATION retained_intron ENSMUSG00000003863 Ppfia3 ENSMUST00000210479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003863 Ppfia3 ENSMUST00000211098 - NO_TRANSLATION retained_intron ENSMUSG00000030865 Chp2 ENSMUST00000160828 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030865 Chp2 ENSMUST00000033152 ENSMUSP00000033152 TRANSLATION protein_coding - CCDS21814.1 1 196.0 21.0 5.35 31.9 54.6 0.0 -4,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000048065 Cyb5r2 ENSMUST00000052438 ENSMUSP00000050061 TRANSLATION protein_coding - CCDS57579.1 1 292.0 17.0 7.0 0.0 236.5 0.0 -4,-5 0.1113 3 18.0 MINOR ENSMUSG00000048065 Cyb5r2 ENSMUST00000208217 ENSMUSP00000146504 TRANSLATION protein_coding - CCDS85373.1 1 276.0 17.0 7.0 7.3 236.5 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000096601 Vmn1r260 ENSMUST00000168392 ENSMUSP00000129454 TRANSLATION protein_coding - CCDS52125.1 - 307.0 0.0 0.0 0.4 56.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030849 Fgfr2 ENSMUST00000130557 - NO_TRANSLATION retained_intron ENSMUSG00000030849 Fgfr2 ENSMUST00000117754 ENSMUSP00000113187 TRANSLATION protein_coding start - 1 608.0 19.0 10.42 0.0 391.8 4.0 3,-2 0.0061 7 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000147859 - NO_TRANSLATION retained_intron ENSMUSG00000030849 Fgfr2 ENSMUST00000148675 - NO_TRANSLATION retained_intron ENSMUSG00000030849 Fgfr2 ENSMUST00000120187 ENSMUSP00000113248 TRANSLATION protein_coding - CCDS52412.1 1 726.0 19.0 13.17 9.9 441.0 4.0 -1,0 0.4851 8 15.206 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000121064 ENSMUSP00000113452 TRANSLATION protein_coding start - 1 609.0 19.0 10.42 0.0 387.9 4.0 3,-2 0.0061 7 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000120715 ENSMUSP00000113474 TRANSLATION protein_coding start - 5 709.0 19.0 12.22 1.0 436.7 4.0 3,-2 0.0331 8 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000117872 ENSMUSP00000113994 TRANSLATION protein_coding - CCDS85431.1 1 723.0 19.0 13.17 9.9 444.9 4.0 -1,0 0.5023 7 15.44 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000124096 ENSMUSP00000130971 TRANSLATION protein_coding - - 5 182.0 1.0 4.0 0.0 170.5 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000153166 ENSMUSP00000120100 TRANSLATION nonsense_mediated_decay - - 1 334.0 0.0 5.37 0.0 89.5 2.0 -1,-5 0.0004 3 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000117073 ENSMUSP00000112672 TRANSLATION protein_coding start - 1 695.0 19.0 12.42 0.0 444.9 4.0 3,-2 0.0224 7 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000208844 - NO_TRANSLATION retained_intron ENSMUSG00000030849 Fgfr2 ENSMUST00000119260 ENSMUSP00000113010 TRANSLATION protein_coding start - 1 819.0 19.0 14.22 2.1 479.6 4.0 3,-2 0.3413 8 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000133806 - NO_TRANSLATION retained_intron ENSMUSG00000030849 Fgfr2 ENSMUST00000117089 ENSMUSP00000112992 TRANSLATION protein_coding start - 1 820.0 19.0 14.22 2.1 475.7 4.0 3,-2 0.2658 8 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000129103 - NO_TRANSLATION retained_intron ENSMUSG00000030849 Fgfr2 ENSMUST00000117691 ENSMUSP00000113180 TRANSLATION protein_coding start - 1 822.0 19.0 14.22 2.1 475.7 4.0 3,-2 0.2661 9 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000120141 ENSMUSP00000113415 TRANSLATION protein_coding start - 1 731.0 19.0 13.22 1.0 441.0 4.0 3,-2 0.0349 7 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000129542 - NO_TRANSLATION retained_intron ENSMUSG00000030849 Fgfr2 ENSMUST00000122054 ENSMUSP00000112430 TRANSLATION protein_coding - CCDS52413.1 1 840.0 19.0 14.47 17.8 479.6 4.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000030849 Fgfr2 ENSMUST00000121080 ENSMUSP00000112585 TRANSLATION protein_coding start - 1 698.0 19.0 12.42 0.0 441.0 4.0 3,-2 0.0178 8 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000127091 ENSMUSP00000122856 TRANSLATION nonsense_mediated_decay start - 2 61.0 0.0 1.0 0.0 26.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000117858 ENSMUSP00000112623 TRANSLATION protein_coding start - 1 813.0 19.0 13.72 0.0 475.7 4.0 3,-2 0.1076 9 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000136264 - NO_TRANSLATION retained_intron ENSMUSG00000030849 Fgfr2 ENSMUST00000117357 ENSMUSP00000112580 TRANSLATION protein_coding start - 1 705.0 19.0 12.92 2.1 441.0 4.0 3,-2 0.0718 7 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000118296 ENSMUSP00000112471 TRANSLATION protein_coding start - 1 724.0 19.0 12.72 0.0 441.0 4.0 3,-2 0.0191 8 -2.0 MINOR ENSMUSG00000030849 Fgfr2 ENSMUST00000122448 ENSMUSP00000113993 TRANSLATION protein_coding start - 1 696.0 19.0 12.42 0.0 441.0 4.0 3,-2 0.0178 7 -2.0 MINOR ENSMUSG00000063317 Usp31 ENSMUST00000205473 - NO_TRANSLATION retained_intron ENSMUSG00000063317 Usp31 ENSMUST00000046929 ENSMUSP00000040037 TRANSLATION protein_coding - CCDS52386.1 5 1344.0 4.0 4.33 0.3 199.7 0.0 -4,-6 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000030750 Nsmce1 ENSMUST00000149289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030750 Nsmce1 ENSMUST00000138616 ENSMUSP00000118058 TRANSLATION protein_coding start/stop - 3 200.0 0.0 3.75 0.0 68.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030750 Nsmce1 ENSMUST00000033006 ENSMUSP00000033006 TRANSLATION protein_coding - CCDS21822.1 1 280.0 8.0 6.125 0.0 117.0 0.0 -4,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000074282 Zfp94 ENSMUST00000126580 - NO_TRANSLATION retained_intron ENSMUSG00000074282 Zfp94 ENSMUST00000032673 ENSMUSP00000032673 TRANSLATION protein_coding - CCDS20945.1 1 480.0 44.0 1.0 0.1 308.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000074282 Zfp94 ENSMUST00000137781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074282 Zfp94 ENSMUST00000154309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074282 Zfp94 ENSMUST00000146817 - NO_TRANSLATION retained_intron ENSMUSG00000074282 Zfp94 ENSMUST00000108436 ENSMUSP00000104075 TRANSLATION protein_coding - CCDS57524.1 1 486.0 44.0 1.0 0.3 308.1 0.0 -4,-5 0.4781 - 14.0 ALTERNATIVE:2 ENSMUSG00000054161 Fam83e ENSMUST00000211124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054161 Fam83e ENSMUST00000210434 - NO_TRANSLATION retained_intron ENSMUSG00000054161 Fam83e ENSMUST00000129507 ENSMUSP00000114397 TRANSLATION protein_coding - CCDS39959.2 1 481.0 0.0 1.4 0.4 340.6 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000036864 Proser3 ENSMUST00000208706 - NO_TRANSLATION retained_intron ENSMUSG00000036864 Proser3 ENSMUST00000134113 - NO_TRANSLATION retained_intron ENSMUSG00000036864 Proser3 ENSMUST00000062708 ENSMUSP00000059135 TRANSLATION protein_coding - CCDS21096.1 5 634.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.8892 3 0.0 PRINCIPAL:2 ENSMUSG00000036864 Proser3 ENSMUST00000153594 ENSMUSP00000123095 TRANSLATION protein_coding stop - 5 77.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0157 - -2.0 MINOR ENSMUSG00000036864 Proser3 ENSMUST00000215288 ENSMUSP00000148912 TRANSLATION protein_coding - - 5 660.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.1442 3 0.0 ALTERNATIVE:2 ENSMUSG00000036864 Proser3 ENSMUST00000108165 ENSMUSP00000103800 TRANSLATION protein_coding - CCDS21096.1 1 634.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.8892 3 0.0 PRINCIPAL:2 ENSMUSG00000073927 Or52h7 ENSMUST00000215410 ENSMUSP00000149718 TRANSLATION protein_coding - CCDS21618.1 5 318.0 0.0 1.0 10.8 348.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073927 Or52h7 ENSMUST00000219111 ENSMUSP00000152027 TRANSLATION protein_coding - CCDS21618.1 5 318.0 0.0 1.0 10.8 348.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073927 Or52h7 ENSMUST00000098175 ENSMUSP00000095777 TRANSLATION protein_coding - CCDS21618.1 - 318.0 0.0 1.0 10.8 348.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073927 Or52h7 ENSMUST00000216131 ENSMUSP00000150811 TRANSLATION protein_coding - CCDS21618.1 5 318.0 0.0 1.0 10.8 348.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030600 Lrfn1 ENSMUST00000191267 - NO_TRANSLATION retained_intron ENSMUSG00000030600 Lrfn1 ENSMUST00000190954 ENSMUSP00000140537 TRANSLATION protein_coding stop - 2 209.0 0.0 1.0 0.0 95.3 0.0 1,-1 0.0019 4 -2.0 MINOR ENSMUSG00000030600 Lrfn1 ENSMUST00000189877 ENSMUSP00000139609 TRANSLATION protein_coding - CCDS21045.1 5 492.0 0.0 1.8 0.0 158.0 0.0 1,-1 0.1651 9 10.17 MINOR ENSMUSG00000030600 Lrfn1 ENSMUST00000055110 ENSMUSP00000057645 TRANSLATION protein_coding - CCDS21045.1 5 492.0 0.0 1.8 0.0 158.0 0.0 1,-1 0.1651 9 10.17 MINOR ENSMUSG00000030600 Lrfn1 ENSMUST00000108288 ENSMUSP00000103923 TRANSLATION protein_coding - CCDS52163.1 1 766.0 0.0 1.8 8.9 188.5 0.0 1,-1 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000040857 Erf ENSMUST00000045847 ENSMUSP00000041912 TRANSLATION protein_coding - CCDS20978.1 1 551.0 0.0 2.0 5.9 113.7 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000040857 Erf ENSMUST00000116343 ENSMUSP00000112046 TRANSLATION protein_coding - - 2 149.0 0.0 2.0 0.0 113.7 0.0 -4,-5 0.0159 1 12.0 MINOR ENSMUSG00000042055 Wdr11 ENSMUST00000143849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042055 Wdr11 ENSMUST00000136734 - NO_TRANSLATION retained_intron ENSMUSG00000042055 Wdr11 ENSMUST00000140877 - NO_TRANSLATION retained_intron ENSMUSG00000042055 Wdr11 ENSMUST00000149541 - NO_TRANSLATION retained_intron ENSMUSG00000042055 Wdr11 ENSMUST00000084519 ENSMUSP00000081567 TRANSLATION protein_coding - CCDS40155.1 1 1223.0 0.0 1.28 13.9 0.0 0.0 -4,-2 1.0 34 10.0 PRINCIPAL:1 ENSMUSG00000042055 Wdr11 ENSMUST00000206442 ENSMUSP00000146228 TRANSLATION protein_coding start - 3 123.0 0.0 0.78 0.0 0.0 0.0 -2,-6 0.0068 3 -2.0 MINOR ENSMUSG00000042055 Wdr11 ENSMUST00000136560 ENSMUSP00000145935 TRANSLATION nonsense_mediated_decay start - 5 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0201 1 -2.0 MINOR ENSMUSG00000042055 Wdr11 ENSMUST00000148752 ENSMUSP00000146236 TRANSLATION nonsense_mediated_decay start - 5 387.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0311 9 -2.0 MINOR ENSMUSG00000042055 Wdr11 ENSMUST00000143422 - NO_TRANSLATION retained_intron ENSMUSG00000070427 Il18bp ENSMUST00000211502 ENSMUSP00000147912 TRANSLATION protein_coding stop - 3 137.0 0.0 2.15 0.0 0.0 0.0 3,-2 0.0787 1 -2.0 MINOR ENSMUSG00000070427 Il18bp ENSMUST00000209844 ENSMUSP00000148080 TRANSLATION protein_coding - CCDS21522.1 1 193.0 0.0 3.275 1.1 0.0 0.0 3,-2 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000070427 Il18bp ENSMUST00000209368 ENSMUSP00000148201 TRANSLATION protein_coding - - 1 194.0 0.0 2.9 0.0 0.0 0.0 3,-2 0.2593 2 5.25 MINOR ENSMUSG00000070427 Il18bp ENSMUST00000094134 ENSMUSP00000091685 TRANSLATION protein_coding - CCDS21522.1 1 193.0 0.0 3.275 1.1 0.0 0.0 3,-2 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000040891 Foxa3 ENSMUST00000036018 ENSMUSP00000043173 TRANSLATION protein_coding - CCDS20886.1 1 353.0 0.0 0.6 9.9 180.7 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000094001 Vmn1r122 ENSMUST00000164409 ENSMUSP00000131706 TRANSLATION protein_coding - CCDS52090.1 - 305.0 0.0 0.0 0.4 61.2 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000008140 Emc10 ENSMUST00000150342 - NO_TRANSLATION retained_intron ENSMUSG00000008140 Emc10 ENSMUST00000118808 ENSMUSP00000113509 TRANSLATION protein_coding - - 1 258.0 0.0 4.2 0.0 0.0 0.0 3,-3 0.7209 3 6.0 PRINCIPAL:4 ENSMUSG00000008140 Emc10 ENSMUST00000239015 ENSMUSP00000159045 TRANSLATION protein_coding - CCDS52231.1 - 268.0 0.0 4.2 0.0 0.0 0.0 1,2 0.4863 3 6.0 ALTERNATIVE:2 ENSMUSG00000008140 Emc10 ENSMUST00000138328 ENSMUSP00000116293 TRANSLATION protein_coding stop - 5 214.0 0.0 4.1 0.0 0.0 0.0 3,-3 0.146 2 -2.0 MINOR ENSMUSG00000008140 Emc10 ENSMUST00000147102 - NO_TRANSLATION retained_intron ENSMUSG00000008140 Emc10 ENSMUST00000123928 - NO_TRANSLATION retained_intron ENSMUSG00000008140 Emc10 ENSMUST00000118515 ENSMUSP00000113141 TRANSLATION protein_coding - - 1 254.0 0.0 4.2 0.0 0.0 0.0 3,-3 0.2886 3 6.0 ALTERNATIVE:2 ENSMUSG00000036427 Gpi1 ENSMUST00000038027 ENSMUSP00000049355 TRANSLATION protein_coding - CCDS21138.1 1 558.0 11.0 16.41 9.8 876.7 0.0 -4,-7 1.0 26 21.0 PRINCIPAL:1 ENSMUSG00000036427 Gpi1 ENSMUST00000205800 ENSMUSP00000146209 TRANSLATION protein_coding start - 5 191.0 0.0 5.08 0.0 269.3 0.0 -4,-6 0.0007 6 -2.0 MINOR ENSMUSG00000036427 Gpi1 ENSMUST00000205983 ENSMUSP00000146273 TRANSLATION nonsense_mediated_decay - - 5 130.0 0.0 3.58 0.0 69.4 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000036427 Gpi1 ENSMUST00000205870 ENSMUSP00000145929 TRANSLATION nonsense_mediated_decay start - 3 83.0 0.0 1.4 0.0 49.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036427 Gpi1 ENSMUST00000126901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036427 Gpi1 ENSMUST00000206415 ENSMUSP00000145891 TRANSLATION protein_coding stop - 5 152.0 0.0 4.58 0.0 65.2 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000036427 Gpi1 ENSMUST00000206603 - NO_TRANSLATION retained_intron ENSMUSG00000036427 Gpi1 ENSMUST00000206232 - NO_TRANSLATION retained_intron ENSMUSG00000036427 Gpi1 ENSMUST00000205865 ENSMUSP00000145839 TRANSLATION nonsense_mediated_decay start - 5 34.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000036427 Gpi1 ENSMUST00000138773 - NO_TRANSLATION retained_intron ENSMUSG00000036427 Gpi1 ENSMUST00000135243 - NO_TRANSLATION retained_intron ENSMUSG00000044362 Ccdc89 ENSMUST00000061391 ENSMUSP00000060309 TRANSLATION protein_coding - CCDS52308.1 - 370.0 0.0 1.0 6.0 0.0 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000044709 Gemin7 ENSMUST00000122055 ENSMUSP00000113583 TRANSLATION protein_coding - CCDS20907.1 3 129.0 0.0 2.1 5.9 115.0 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000044709 Gemin7 ENSMUST00000208826 ENSMUSP00000147112 TRANSLATION protein_coding stop - 3 114.0 0.0 1.6 0.0 85.9 0.0 -4,-7 0.0005 - -2.0 MINOR ENSMUSG00000044709 Gemin7 ENSMUST00000117222 ENSMUSP00000113266 TRANSLATION protein_coding - CCDS20907.1 2 129.0 0.0 2.1 5.9 115.0 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000044709 Gemin7 ENSMUST00000122127 ENSMUSP00000113709 TRANSLATION protein_coding - CCDS20907.1 3 129.0 0.0 2.1 5.9 115.0 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000044709 Gemin7 ENSMUST00000151646 ENSMUSP00000116207 TRANSLATION protein_coding stop - 2 81.0 0.0 0.6 0.0 34.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000044709 Gemin7 ENSMUST00000051364 ENSMUSP00000055844 TRANSLATION protein_coding - CCDS20907.1 1 129.0 0.0 2.1 5.9 115.0 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000044709 Gemin7 ENSMUST00000119912 ENSMUSP00000112742 TRANSLATION protein_coding - CCDS20907.1 3 129.0 0.0 2.1 5.9 115.0 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000030512 Snrpa1 ENSMUST00000153609 ENSMUSP00000117947 TRANSLATION protein_coding - CCDS21342.1 1 255.0 0.0 4.75 22.1 0.0 0.0 -4,-5 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000030512 Snrpa1 ENSMUST00000206166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030512 Snrpa1 ENSMUST00000206150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030512 Snrpa1 ENSMUST00000123157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030512 Snrpa1 ENSMUST00000147702 - NO_TRANSLATION retained_intron ENSMUSG00000030512 Snrpa1 ENSMUST00000139082 - NO_TRANSLATION retained_intron ENSMUSG00000030512 Snrpa1 ENSMUST00000138271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030512 Snrpa1 ENSMUST00000032723 ENSMUSP00000032723 TRANSLATION nonsense_mediated_decay - - 1 154.0 0.0 4.0 0.0 0.0 0.0 -4,-5 0.0016 4 -2.0 MINOR ENSMUSG00000030512 Snrpa1 ENSMUST00000206409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061028 Clasrp ENSMUST00000086041 ENSMUSP00000083205 TRANSLATION protein_coding - CCDS52061.1 1 668.0 0.0 0.0 0.4 149.6 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000061028 Clasrp ENSMUST00000208464 - NO_TRANSLATION retained_intron ENSMUSG00000061028 Clasrp ENSMUST00000207663 ENSMUSP00000147069 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061028 Clasrp ENSMUST00000207253 - NO_TRANSLATION retained_intron ENSMUSG00000061028 Clasrp ENSMUST00000207325 - NO_TRANSLATION retained_intron ENSMUSG00000061028 Clasrp ENSMUST00000208068 ENSMUSP00000147103 TRANSLATION nonsense_mediated_decay - - 1 588.0 0.0 0.0 0.0 149.6 0.0 -4,-5 0.0848 2 -2.0 MINOR ENSMUSG00000061028 Clasrp ENSMUST00000208427 - NO_TRANSLATION retained_intron ENSMUSG00000061028 Clasrp ENSMUST00000207524 ENSMUSP00000146794 TRANSLATION nonsense_mediated_decay - - 5 207.0 0.0 0.0 0.0 149.6 0.0 -4,-5 0.0515 1 -2.0 MINOR ENSMUSG00000061028 Clasrp ENSMUST00000207447 - NO_TRANSLATION retained_intron ENSMUSG00000061028 Clasrp ENSMUST00000209059 - NO_TRANSLATION retained_intron ENSMUSG00000061028 Clasrp ENSMUST00000208716 - NO_TRANSLATION retained_intron ENSMUSG00000061028 Clasrp ENSMUST00000207907 ENSMUSP00000146982 TRANSLATION nonsense_mediated_decay - - 1 627.0 0.0 0.0 0.0 149.6 0.0 -4,-5 0.0913 2 -2.0 MINOR ENSMUSG00000061028 Clasrp ENSMUST00000207264 - NO_TRANSLATION retained_intron ENSMUSG00000062300 Nectin2 ENSMUST00000075447 ENSMUSP00000074898 TRANSLATION protein_coding - CCDS20913.1 1 530.0 0.0 4.066 2.5 108.6 1.0 3,-1 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000062300 Nectin2 ENSMUST00000207271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062300 Nectin2 ENSMUST00000108450 ENSMUSP00000104089 TRANSLATION protein_coding - CCDS52063.1 1 467.0 0.0 4.0 0.4 108.6 1.0 3,-1 0.3855 11 11.868 MINOR ENSMUSG00000052396 Mogat2 ENSMUST00000064231 ENSMUSP00000064041 TRANSLATION protein_coding - CCDS21478.1 1 334.0 0.0 6.0 35.7 388.8 0.0 -3,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000052396 Mogat2 ENSMUST00000132343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062987 Or2d2b ENSMUST00000215713 ENSMUSP00000149136 TRANSLATION protein_coding - CCDS52353.1 5 315.0 0.0 1.0 11.5 189.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062987 Or2d2b ENSMUST00000081044 ENSMUSP00000079834 TRANSLATION protein_coding - CCDS52353.1 - 315.0 0.0 1.0 11.5 189.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060376 Bckdha ENSMUST00000205808 ENSMUSP00000146018 TRANSLATION protein_coding start - 5 99.0 5.0 2.198 0.0 116.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000060376 Bckdha ENSMUST00000071329 ENSMUSP00000071292 TRANSLATION protein_coding - CCDS52154.1 1 446.0 16.0 9.25 8.4 382.1 0.0 -2,2 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000078815 Cacng6 ENSMUST00000108647 ENSMUSP00000104287 TRANSLATION protein_coding - - 5 214.0 0.0 0.27 6.6 39.8 2.0 -4,-1 0.4605 4 6.786 MINOR ENSMUSG00000078815 Cacng6 ENSMUST00000183200 ENSMUSP00000138622 TRANSLATION protein_coding - CCDS39726.1 1 260.0 0.0 0.77 8.0 101.8 4.0 -4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000054676 1600014C10Rik ENSMUST00000178890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054676 1600014C10Rik ENSMUST00000178207 ENSMUSP00000146124 TRANSLATION protein_coding - - 1 141.0 0.0 0.0 26.9 0.0 0.0 -4,-5 1.0 2 4.0 PRINCIPAL:1 ENSMUSG00000054676 1600014C10Rik ENSMUST00000178876 ENSMUSP00000146135 TRANSLATION protein_coding - - 1 141.0 0.0 0.0 26.9 0.0 0.0 -4,-5 1.0 2 4.0 PRINCIPAL:1 ENSMUSG00000054676 1600014C10Rik ENSMUST00000179992 ENSMUSP00000145679 TRANSLATION protein_coding - - 3 141.0 0.0 0.0 26.9 0.0 0.0 -4,-5 1.0 2 4.0 PRINCIPAL:1 ENSMUSG00000054676 1600014C10Rik ENSMUST00000179525 ENSMUSP00000145694 TRANSLATION protein_coding - - 2 141.0 0.0 0.0 26.9 0.0 0.0 -4,-5 1.0 2 4.0 PRINCIPAL:1 ENSMUSG00000054676 1600014C10Rik ENSMUST00000177983 ENSMUSP00000137538 TRANSLATION protein_coding - - 2 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0128 1 0.0 MINOR ENSMUSG00000054676 1600014C10Rik ENSMUST00000179503 ENSMUSP00000145884 TRANSLATION protein_coding - - 5 141.0 0.0 0.0 26.9 0.0 0.0 -4,-5 1.0 2 4.0 PRINCIPAL:1 ENSMUSG00000073968 Trim68 ENSMUST00000210406 - NO_TRANSLATION retained_intron ENSMUSG00000073968 Trim68 ENSMUST00000082175 ENSMUSP00000080813 TRANSLATION protein_coding - CCDS40052.1 1 485.0 16.0 4.263 9.1 213.8 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000073968 Trim68 ENSMUST00000210855 ENSMUSP00000147991 TRANSLATION protein_coding - CCDS85365.1 1 327.0 16.0 1.565 0.0 90.0 0.0 -4,-5 0.0049 2 6.606 MINOR ENSMUSG00000073968 Trim68 ENSMUST00000209621 - NO_TRANSLATION retained_intron ENSMUSG00000073968 Trim68 ENSMUST00000209654 - NO_TRANSLATION retained_intron ENSMUSG00000019738 Polr2i ENSMUST00000138118 - NO_TRANSLATION retained_intron ENSMUSG00000019738 Polr2i ENSMUST00000145559 - NO_TRANSLATION retained_intron ENSMUSG00000019738 Polr2i ENSMUST00000150841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019738 Polr2i ENSMUST00000138886 - NO_TRANSLATION retained_intron ENSMUSG00000019738 Polr2i ENSMUST00000149654 ENSMUSP00000116741 TRANSLATION protein_coding stop - 5 83.0 6.0 2.5 0.0 37.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019738 Polr2i ENSMUST00000108192 ENSMUSP00000103827 TRANSLATION protein_coding - - 2 103.0 9.0 3.25 11.3 82.6 0.0 -4,-5 0.3408 3 14.684 MINOR ENSMUSG00000019738 Polr2i ENSMUST00000108193 ENSMUSP00000103828 TRANSLATION protein_coding - - 3 123.0 5.0 1.4 0.0 37.6 0.0 -4,-5 0.0217 1 3.312 MINOR ENSMUSG00000019738 Polr2i ENSMUST00000019882 ENSMUSP00000019882 TRANSLATION protein_coding - CCDS21084.1 1 125.0 13.0 4.0 18.9 106.8 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000118298 Vmn1r60 ENSMUST00000173782 ENSMUSP00000133943 TRANSLATION protein_coding - CCDS51985.1 - 300.0 0.0 0.0 0.0 58.5 5.0 1,-3 0.5409 - 2.0 ALTERNATIVE:2 ENSMUSG00000118298 Vmn1r60 ENSMUST00000237052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118298 Vmn1r60 ENSMUST00000236262 ENSMUSP00000157873 TRANSLATION protein_coding - - - 310.0 0.0 0.0 0.0 58.5 5.0 0,-3 0.7402 - 2.0 PRINCIPAL:4 ENSMUSG00000019429 Ffar3 ENSMUST00000185748 ENSMUSP00000140252 TRANSLATION protein_coding - CCDS21112.1 - 319.0 0.0 0.4 1.3 107.6 6.0 1,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000019429 Ffar3 ENSMUST00000094583 ENSMUSP00000092163 TRANSLATION protein_coding - CCDS21112.1 1 319.0 0.0 0.4 1.3 107.6 6.0 1,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000108815 Gm49388 ENSMUST00000136823 ENSMUSP00000145901 TRANSLATION nonsense_mediated_decay,RT start - 2 29.0 5.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000108815 Gm49388 ENSMUST00000154987 ENSMUSP00000145647 TRANSLATION nonsense_mediated_decay,RT start - 1 1173.0 18.0 3.844 0.0 122.0 0.0 -4,-5 0.9863 - -2.0 PRINCIPAL:5 ENSMUSG00000054746 Abca15 ENSMUST00000121265 ENSMUSP00000112821 TRANSLATION protein_coding - - 5 1668.0 19.0 11.466 0.1 337.7 17.0 -4,-7 0.7481 - 13.85 ALTERNATIVE:2 ENSMUSG00000054746 Abca15 ENSMUST00000140459 - NO_TRANSLATION retained_intron ENSMUSG00000054746 Abca15 ENSMUST00000207220 ENSMUSP00000146489 TRANSLATION protein_coding - - 1 109.0 0.0 1.4 0.0 0.0 1.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000054746 Abca15 ENSMUST00000076272 ENSMUSP00000075621 TRANSLATION protein_coding - CCDS40109.1 1 1668.0 19.0 11.541 0.1 337.7 17.0 -4,-7 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000025139 Tollip ENSMUST00000055819 ENSMUSP00000051485 TRANSLATION protein_coding - - 1 220.0 2.0 3.56 0.0 52.8 0.0 -4,-6 0.0 7 8.804 MINOR ENSMUSG00000025139 Tollip ENSMUST00000130439 ENSMUSP00000117938 TRANSLATION protein_coding - CCDS85459.1 5 270.0 2.0 4.23 1.2 106.1 0.0 -4,-5 0.2348 7 13.368 MINOR ENSMUSG00000025139 Tollip ENSMUST00000211231 - NO_TRANSLATION retained_intron ENSMUSG00000025139 Tollip ENSMUST00000001950 ENSMUSP00000001950 TRANSLATION protein_coding - CCDS22020.1 1 274.0 2.0 4.56 27.9 106.1 0.0 -4,-6 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000025139 Tollip ENSMUST00000151890 ENSMUSP00000118336 TRANSLATION protein_coding - - 1 205.0 2.0 3.5 2.1 96.3 0.0 -4,-6 0.0417 5 11.458 MINOR ENSMUSG00000059891 Tsks ENSMUST00000080233 ENSMUSP00000079122 TRANSLATION protein_coding - CCDS39946.1 1 525.0 0.0 0.0 4.0 893.8 0.0 -4,-5 0.5695 9 3.248 MINOR ENSMUSG00000059891 Tsks ENSMUST00000120929 ENSMUSP00000112673 TRANSLATION protein_coding - CCDS52240.1 1 585.0 0.0 0.0 1.8 973.0 0.0 -4,-5 1.0 9 6.534 PRINCIPAL:1 ENSMUSG00000059891 Tsks ENSMUST00000207719 ENSMUSP00000147058 TRANSLATION protein_coding stop - 5 109.0 0.0 0.0 0.0 183.6 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000059891 Tsks ENSMUST00000208475 ENSMUSP00000146743 TRANSLATION protein_coding start - 5 185.0 0.0 0.0 0.0 172.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054716 Zfp771 ENSMUST00000052509 ENSMUSP00000056959 TRANSLATION protein_coding - CCDS21861.1 1 317.0 32.0 1.6 8.4 192.6 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000054716 Zfp771 ENSMUST00000151893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054716 Zfp771 ENSMUST00000205583 ENSMUSP00000145541 TRANSLATION protein_coding stop - 2 18.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001829 Clpb ENSMUST00000001884 ENSMUSP00000001884 TRANSLATION protein_coding - CCDS21513.1 1 677.0 17.0 8.04 8.7 264.6 0.0 -4,0 1.0 21 16.358 PRINCIPAL:2 ENSMUSG00000001829 Clpb ENSMUST00000106998 ENSMUSP00000102611 TRANSLATION protein_coding - - 5 707.0 17.0 8.36 6.9 262.1 0.0 -4,0 0.687 20 15.798 ALTERNATIVE:1 ENSMUSG00000001829 Clpb ENSMUST00000150355 - NO_TRANSLATION retained_intron ENSMUSG00000001829 Clpb ENSMUST00000150832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001829 Clpb ENSMUST00000136193 - NO_TRANSLATION retained_intron ENSMUSG00000001829 Clpb ENSMUST00000209579 ENSMUSP00000148062 TRANSLATION protein_coding - - 1 678.0 17.0 8.04 0.0 264.6 0.0 -4,0 0.3543 21 13.358 MINOR ENSMUSG00000001829 Clpb ENSMUST00000142803 - NO_TRANSLATION retained_intron ENSMUSG00000001829 Clpb ENSMUST00000153473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001829 Clpb ENSMUST00000123870 ENSMUSP00000121861 TRANSLATION nonsense_mediated_decay - - 3 150.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000001829 Clpb ENSMUST00000147439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001829 Clpb ENSMUST00000137214 - NO_TRANSLATION retained_intron ENSMUSG00000030966 Trim21 ENSMUST00000033264 ENSMUSP00000033264 TRANSLATION protein_coding - CCDS40051.1 1 462.0 16.0 3.928 0.3 214.7 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000030966 Trim21 ENSMUST00000210261 - NO_TRANSLATION retained_intron ENSMUSG00000030966 Trim21 ENSMUST00000106913 ENSMUSP00000102526 TRANSLATION protein_coding - CCDS40051.1 1 462.0 16.0 3.928 0.3 214.7 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000030966 Trim21 ENSMUST00000209907 - NO_TRANSLATION retained_intron ENSMUSG00000030966 Trim21 ENSMUST00000209679 - NO_TRANSLATION retained_intron ENSMUSG00000005442 Cic ENSMUST00000168956 - NO_TRANSLATION retained_intron ENSMUSG00000005442 Cic ENSMUST00000164820 ENSMUSP00000130146 TRANSLATION protein_coding start - 3 75.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000005442 Cic ENSMUST00000164440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005442 Cic ENSMUST00000167379 - NO_TRANSLATION retained_intron ENSMUSG00000005442 Cic ENSMUST00000169743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005442 Cic ENSMUST00000169266 ENSMUSP00000132351 TRANSLATION protein_coding - CCDS80678.1 1 2510.0 0.0 2.4 0.1 131.5 0.0 -4,-7 1.0 29 12.0 PRINCIPAL:1 ENSMUSG00000005442 Cic ENSMUST00000169392 ENSMUSP00000131680 TRANSLATION protein_coding stop - 2 142.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000005442 Cic ENSMUST00000163320 ENSMUSP00000126659 TRANSLATION protein_coding - CCDS52146.1 1 1604.0 0.0 2.4 2.5 61.7 0.0 -4,-1 0.4955 17 8.812 MINOR ENSMUSG00000005442 Cic ENSMUST00000005578 ENSMUSP00000005578 TRANSLATION protein_coding - - 5 1604.0 0.0 2.4 2.5 61.7 0.0 -4,-1 0.3965 17 8.812 MINOR ENSMUSG00000005442 Cic ENSMUST00000163901 ENSMUSP00000127858 TRANSLATION protein_coding start - 3 150.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000005442 Cic ENSMUST00000163819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005442 Cic ENSMUST00000165742 - NO_TRANSLATION retained_intron ENSMUSG00000005442 Cic ENSMUST00000167162 - NO_TRANSLATION retained_intron ENSMUSG00000005442 Cic ENSMUST00000165239 ENSMUSP00000128071 TRANSLATION protein_coding stop - 5 1153.0 0.0 2.4 0.0 61.7 0.0 -4,-1 0.0914 12 -2.0 MINOR ENSMUSG00000005442 Cic ENSMUST00000170500 - NO_TRANSLATION retained_intron ENSMUSG00000057465 Saa2 ENSMUST00000075982 ENSMUSP00000075365 TRANSLATION protein_coding - CCDS21285.1 1 122.0 0.0 2.6 8.9 158.8 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057465 Saa2 ENSMUST00000211766 - NO_TRANSLATION retained_intron ENSMUSG00000057465 Saa2 ENSMUST00000210272 ENSMUSP00000147266 TRANSLATION protein_coding - - 3 88.0 0.0 2.0 1.0 141.5 0.0 -4,-5 0.041 - 9.576 MINOR ENSMUSG00000057465 Saa2 ENSMUST00000210769 ENSMUSP00000147751 TRANSLATION protein_coding - CCDS21285.1 1 122.0 0.0 2.6 8.9 158.8 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062434 Or10a3b ENSMUST00000217279 ENSMUSP00000150359 TRANSLATION protein_coding - CCDS21728.1 5 314.0 0.0 1.0 11.8 201.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062434 Or10a3b ENSMUST00000216092 ENSMUSP00000149160 TRANSLATION protein_coding - CCDS21728.1 5 314.0 0.0 1.0 11.8 201.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062434 Or10a3b ENSMUST00000071410 ENSMUSP00000071358 TRANSLATION protein_coding - CCDS21728.1 - 314.0 0.0 1.0 11.8 201.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030751 Psma1 ENSMUST00000123801 - NO_TRANSLATION retained_intron ENSMUSG00000030751 Psma1 ENSMUST00000033008 ENSMUSP00000033008 TRANSLATION protein_coding - CCDS40094.1 1 263.0 0.0 7.08 29.0 227.5 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000030751 Psma1 ENSMUST00000154909 - NO_TRANSLATION retained_intron ENSMUSG00000030751 Psma1 ENSMUST00000210966 - NO_TRANSLATION retained_intron ENSMUSG00000030751 Psma1 ENSMUST00000135570 ENSMUSP00000147815 TRANSLATION protein_coding - - 3 238.0 0.0 6.25 1.0 179.1 0.0 -4,-7 0.0386 13 7.434 MINOR ENSMUSG00000051207 Mrgprd ENSMUST00000062163 ENSMUSP00000063021 TRANSLATION protein_coding - CCDS22057.1 1 321.0 0.0 0.48 2.2 41.5 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000102252 Snrpn ENSMUST00000098402 ENSMUSP00000096003 TRANSLATION protein_coding - CCDS39974.1 5 240.0 5.0 2.0 11.0 70.8 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000102252 Snrpn ENSMUST00000059305 ENSMUSP00000055941 TRANSLATION protein_coding - CCDS39974.1 1 240.0 5.0 2.0 11.0 70.8 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000038292 Kash5 ENSMUST00000121017 ENSMUSP00000113616 TRANSLATION protein_coding - CCDS21234.2 1 648.0 0.0 0.0 0.0 312.9 0.0 -4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038292 Kash5 ENSMUST00000211277 - NO_TRANSLATION retained_intron ENSMUSG00000008435 Rdh13 ENSMUST00000128299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008435 Rdh13 ENSMUST00000119485 ENSMUSP00000113433 TRANSLATION nonsense_mediated_decay - - 1 299.0 25.0 5.25 0.0 40.4 0.0 0,-5 0.0031 5 -2.0 MINOR ENSMUSG00000008435 Rdh13 ENSMUST00000008579 ENSMUSP00000008579 TRANSLATION protein_coding - CCDS20735.1 1 334.0 31.0 6.5 5.4 121.8 0.0 0,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000008435 Rdh13 ENSMUST00000138798 ENSMUSP00000114390 TRANSLATION protein_coding stop - 3 115.0 16.0 2.75 0.0 67.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000008435 Rdh13 ENSMUST00000147599 - NO_TRANSLATION retained_intron ENSMUSG00000008435 Rdh13 ENSMUST00000154033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031072 LTO1 ENSMUST00000147460 - NO_TRANSLATION retained_intron ENSMUSG00000031072 LTO1 ENSMUST00000105895 ENSMUSP00000101515 TRANSLATION protein_coding - - 2 147.0 0.0 3.21 0.0 42.7 0.0 -4,-5 0.0008 1 10.5 MINOR ENSMUSG00000031072 LTO1 ENSMUST00000093964 - NO_TRANSLATION retained_intron ENSMUSG00000031072 LTO1 ENSMUST00000207453 ENSMUSP00000146778 TRANSLATION protein_coding start - 5 81.0 0.0 1.33 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031072 LTO1 ENSMUST00000128057 ENSMUSP00000115840 TRANSLATION protein_coding - - 1 128.0 0.0 2.61 0.0 42.7 0.0 -4,-5 0.001 1 9.3 MINOR ENSMUSG00000031072 LTO1 ENSMUST00000207094 - NO_TRANSLATION retained_intron ENSMUSG00000031072 LTO1 ENSMUST00000141737 ENSMUSP00000147240 TRANSLATION protein_coding stop - 3 97.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031072 LTO1 ENSMUST00000033388 ENSMUSP00000033388 TRANSLATION protein_coding - - 1 137.0 0.0 3.96 0.0 42.7 0.0 -4,-5 0.7254 2 12.0 PRINCIPAL:1 ENSMUSG00000025477 Inpp5a ENSMUST00000106098 ENSMUSP00000101704 TRANSLATION protein_coding - CCDS52428.1 1 412.0 0.0 11.95 25.1 60.5 0.0 -2,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000025477 Inpp5a ENSMUST00000097975 ENSMUSP00000095589 TRANSLATION protein_coding - - 1 420.0 0.0 11.2 0.0 59.1 0.0 -3,-5 0.0272 13 10.362 MINOR ENSMUSG00000025477 Inpp5a ENSMUST00000131781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025477 Inpp5a ENSMUST00000152475 - NO_TRANSLATION retained_intron ENSMUSG00000025477 Inpp5a ENSMUST00000138183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025477 Inpp5a ENSMUST00000026550 ENSMUSP00000026550 TRANSLATION protein_coding - CCDS21954.1 1 422.0 0.0 11.75 0.1 60.5 0.0 -2,-5 0.1925 14 11.598 MINOR ENSMUSG00000025477 Inpp5a ENSMUST00000210320 - NO_TRANSLATION retained_intron ENSMUSG00000096719 Mrgpra2b ENSMUST00000119798 ENSMUSP00000113310 TRANSLATION protein_coding - CCDS21296.2 1 331.0 0.0 1.0 0.4 56.1 6.0 -4,-7 0.511 - 6.0 ALTERNATIVE:2 ENSMUSG00000096719 Mrgpra2b ENSMUST00000172559 ENSMUSP00000133751 TRANSLATION protein_coding - - 1 305.0 0.0 1.0 0.0 56.1 6.0 -4,-5 0.7922 - 6.0 PRINCIPAL:2 ENSMUSG00000063931 Pepd ENSMUST00000161128 - NO_TRANSLATION retained_intron ENSMUSG00000063931 Pepd ENSMUST00000162509 - NO_TRANSLATION retained_intron ENSMUSG00000063931 Pepd ENSMUST00000160459 - NO_TRANSLATION retained_intron ENSMUSG00000063931 Pepd ENSMUST00000161900 ENSMUSP00000133634 TRANSLATION nonsense_mediated_decay start - 5 80.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000063931 Pepd ENSMUST00000160320 - NO_TRANSLATION retained_intron ENSMUSG00000063931 Pepd ENSMUST00000075068 ENSMUSP00000075683 TRANSLATION protein_coding - CCDS21143.1 1 493.0 12.0 11.25 17.5 293.5 0.0 -4,-2 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000073932 Or51i2 ENSMUST00000213904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073932 Or51i2 ENSMUST00000098183 ENSMUSP00000095785 TRANSLATION protein_coding - CCDS21603.1 - 312.0 0.0 1.0 12.5 393.0 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073932 Or51i2 ENSMUST00000213214 ENSMUSP00000149866 TRANSLATION protein_coding - CCDS21603.1 5 312.0 0.0 1.0 12.5 393.0 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035704 Alg8 ENSMUST00000130111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035704 Alg8 ENSMUST00000147297 - NO_TRANSLATION retained_intron ENSMUSG00000035704 Alg8 ENSMUST00000154107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035704 Alg8 ENSMUST00000149031 - NO_TRANSLATION retained_intron ENSMUSG00000035704 Alg8 ENSMUST00000098300 ENSMUSP00000095901 TRANSLATION protein_coding - CCDS52313.1 1 526.0 0.0 3.31 19.7 565.5 0.0 0,-3 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000035704 Alg8 ENSMUST00000137105 - NO_TRANSLATION retained_intron ENSMUSG00000110105 Gm45844 ENSMUST00000209325 ENSMUSP00000147437 TRANSLATION protein_coding,RT - - 1 106.0 3.0 1.165 0.0 53.7 0.0 -4,-5 0.0065 - -2.0 ALTERNATIVE:2 ENSMUSG00000110105 Gm45844 ENSMUST00000173842 ENSMUSP00000147827 TRANSLATION protein_coding,RT - - 3 104.0 2.0 1.0 0.0 53.0 0.0 -4,-5 0.0013 - -2.0 ALTERNATIVE:2 ENSMUSG00000110105 Gm45844 ENSMUST00000209788 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110105 Gm45844 ENSMUST00000210333 ENSMUSP00000147617 TRANSLATION protein_coding,RT - - 1 137.0 2.0 1.3 0.0 53.0 0.0 -4,-7 0.5159 - -2.0 PRINCIPAL:5 ENSMUSG00000110105 Gm45844 ENSMUST00000209833 ENSMUSP00000147490 TRANSLATION protein_coding,RT - - 5 110.0 2.0 1.0 0.0 55.3 0.0 -4,-5 0.0208 - -2.0 ALTERNATIVE:2 ENSMUSG00000102627 Snurf ENSMUST00000194059 ENSMUSP00000141531 TRANSLATION protein_coding - CCDS57553.1 2 71.0 0.0 0.0 9.1 156.1 0.0 -4,-2 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000055409 Nell1 ENSMUST00000081872 ENSMUSP00000080550 TRANSLATION protein_coding - CCDS21309.1 1 810.0 12.0 7.225 15.2 238.5 0.0 4,-1 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000055409 Nell1 ENSMUST00000145096 - NO_TRANSLATION retained_intron ENSMUSG00000055409 Nell1 ENSMUST00000154410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055409 Nell1 ENSMUST00000151721 ENSMUSP00000114706 TRANSLATION protein_coding stop - 1 379.0 0.0 0.605 0.0 28.3 0.0 4,-1 0.0004 1 -2.0 MINOR ENSMUSG00000055409 Nell1 ENSMUST00000107603 ENSMUSP00000103229 TRANSLATION protein_coding - - 5 763.0 6.0 6.225 10.7 208.0 0.0 4,-1 0.5296 7 12.902 MINOR ENSMUSG00000043948 Or52b2 ENSMUST00000213290 ENSMUSP00000150297 TRANSLATION protein_coding - CCDS21647.1 5 322.0 0.0 1.0 12.2 374.6 6.0 -2,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043948 Or52b2 ENSMUST00000057528 ENSMUSP00000061078 TRANSLATION protein_coding - CCDS21647.1 - 322.0 0.0 1.0 12.2 374.6 6.0 -2,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073952 Or52ab2 ENSMUST00000098203 ENSMUSP00000095804 TRANSLATION protein_coding - CCDS52336.1 - 315.0 0.0 1.0 8.3 298.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073952 Or52ab2 ENSMUST00000216456 ENSMUSP00000150238 TRANSLATION protein_coding - CCDS52336.1 5 315.0 0.0 1.0 8.3 298.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030609 Aen ENSMUST00000107421 ENSMUSP00000103044 TRANSLATION protein_coding - CCDS52277.1 1 298.0 8.0 2.75 0.0 59.4 0.0 -4,-5 0.177 1 14.0 ALTERNATIVE:2 ENSMUSG00000030609 Aen ENSMUST00000107423 ENSMUSP00000103046 TRANSLATION protein_coding - CCDS39988.2 5 336.0 8.0 2.75 0.1 59.4 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000030609 Aen ENSMUST00000138167 ENSMUSP00000117331 TRANSLATION protein_coding stop - 3 138.0 6.0 1.0 0.0 31.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030609 Aen ENSMUST00000107425 ENSMUSP00000103048 TRANSLATION protein_coding - CCDS39988.2 1 336.0 8.0 2.75 0.1 59.4 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000030609 Aen ENSMUST00000172017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030609 Aen ENSMUST00000206661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030609 Aen ENSMUST00000205861 ENSMUSP00000145715 TRANSLATION protein_coding start/stop - 5 178.0 7.0 2.15 0.0 44.1 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000030609 Aen ENSMUST00000123824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030609 Aen ENSMUST00000205882 ENSMUSP00000146246 TRANSLATION protein_coding stop - 1 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070841 Vmn2r34 ENSMUST00000173459 ENSMUSP00000133841 TRANSLATION protein_coding - CCDS57480.1 5 852.0 4.0 1.82 0.1 372.8 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040017 Saa4 ENSMUST00000006952 ENSMUSP00000006952 TRANSLATION protein_coding - CCDS21283.1 1 130.0 0.0 1.7 8.9 140.2 0.0 4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000031027 Stk33 ENSMUST00000090414 ENSMUSP00000087897 TRANSLATION protein_coding - CCDS52358.1 5 491.0 18.0 7.2 0.0 256.4 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000031027 Stk33 ENSMUST00000141210 ENSMUSP00000147147 TRANSLATION protein_coding - - 3 99.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000031027 Stk33 ENSMUST00000121748 ENSMUSP00000112515 TRANSLATION protein_coding - CCDS52358.1 5 491.0 18.0 7.2 0.0 256.4 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000031027 Stk33 ENSMUST00000121378 ENSMUSP00000112560 TRANSLATION protein_coding - - 1 368.0 13.0 6.7 0.0 236.7 0.0 -4,-5 0.0081 1 12.48 MINOR ENSMUSG00000031027 Stk33 ENSMUST00000106745 ENSMUSP00000102356 TRANSLATION protein_coding - CCDS52358.1 1 491.0 18.0 7.2 0.0 256.4 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000003545 Fosb ENSMUST00000207334 ENSMUSP00000147210 TRANSLATION protein_coding - - 5 302.0 0.0 1.0 2.8 0.0 0.0 -4,-5 0.0799 - 3.54 MINOR ENSMUSG00000003545 Fosb ENSMUST00000003640 ENSMUSP00000003640 TRANSLATION protein_coding - CCDS20897.1 1 338.0 0.0 2.0 11.0 32.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003545 Fosb ENSMUST00000207716 ENSMUSP00000146949 TRANSLATION protein_coding - - 5 263.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - 3.0 MINOR ENSMUSG00000003545 Fosb ENSMUST00000208446 ENSMUSP00000146789 TRANSLATION protein_coding - CCDS85225.1 1 237.0 0.0 2.0 1.8 32.4 0.0 -4,-5 0.3157 - 12.24 MINOR ENSMUSG00000003545 Fosb ENSMUST00000208230 - NO_TRANSLATION retained_intron ENSMUSG00000003545 Fosb ENSMUST00000208326 ENSMUSP00000146569 TRANSLATION protein_coding - - 5 299.0 0.0 2.0 0.0 32.4 0.0 -4,-5 0.073 - 12.0 MINOR ENSMUSG00000003545 Fosb ENSMUST00000208505 ENSMUSP00000146525 TRANSLATION protein_coding - - 5 201.0 0.0 1.0 1.0 0.0 0.0 -4,-5 0.013 - 3.0 MINOR ENSMUSG00000073899 Or2d3b ENSMUST00000207492 ENSMUSP00000146909 TRANSLATION protein_coding - CCDS21679.1 2 307.0 0.0 1.0 14.7 195.8 6.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073899 Or2d3b ENSMUST00000215949 ENSMUSP00000149624 TRANSLATION protein_coding - CCDS21679.1 5 307.0 0.0 1.0 14.7 195.8 6.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073899 Or2d3b ENSMUST00000098140 ENSMUSP00000095744 TRANSLATION protein_coding - CCDS21679.1 - 307.0 0.0 1.0 14.7 195.8 6.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030649 Anapc15 ENSMUST00000150018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030649 Anapc15 ENSMUST00000178851 ENSMUSP00000136164 TRANSLATION protein_coding - CCDS21518.1 2 132.0 0.0 2.0 1.1 135.1 0.0 -4,-7 0.2929 1 12.012 MINOR ENSMUSG00000030649 Anapc15 ENSMUST00000035395 ENSMUSP00000040286 TRANSLATION protein_coding - CCDS80762.1 1 121.0 0.0 2.0 29.8 135.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030649 Anapc15 ENSMUST00000106973 ENSMUSP00000102586 TRANSLATION protein_coding - CCDS80762.1 2 121.0 0.0 2.0 29.8 135.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030649 Anapc15 ENSMUST00000032884 - NO_TRANSLATION retained_intron ENSMUSG00000030649 Anapc15 ENSMUST00000098237 ENSMUSP00000095839 TRANSLATION protein_coding - - 1 161.0 0.0 2.0 0.0 135.1 0.0 -4,-7 0.0157 1 12.0 MINOR ENSMUSG00000030649 Anapc15 ENSMUST00000131269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030649 Anapc15 ENSMUST00000129641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030649 Anapc15 ENSMUST00000210984 ENSMUSP00000147669 TRANSLATION protein_coding stop - 3 117.0 0.0 2.0 0.0 135.1 0.0 -4,-7 0.0371 1 -2.0 MINOR ENSMUSG00000030649 Anapc15 ENSMUST00000146286 - NO_TRANSLATION retained_intron ENSMUSG00000030649 Anapc15 ENSMUST00000106978 ENSMUSP00000102591 TRANSLATION protein_coding - CCDS21518.1 1 132.0 0.0 2.0 1.1 135.1 0.0 -4,-7 0.2929 1 12.012 MINOR ENSMUSG00000030649 Anapc15 ENSMUST00000209334 ENSMUSP00000147346 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000030649 Anapc15 ENSMUST00000137949 - NO_TRANSLATION retained_intron ENSMUSG00000030649 Anapc15 ENSMUST00000144207 ENSMUSP00000114771 TRANSLATION protein_coding - CCDS21518.1 1 132.0 0.0 2.0 1.1 135.1 0.0 -4,-7 0.2929 1 12.012 MINOR ENSMUSG00000030649 Anapc15 ENSMUST00000211100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030649 Anapc15 ENSMUST00000143835 ENSMUSP00000120373 TRANSLATION protein_coding stop - 3 118.0 0.0 2.0 0.0 135.1 0.0 -4,-7 0.0613 1 -2.0 MINOR ENSMUSG00000110103 Zscan4-ps1 ENSMUST00000165848 ENSMUSP00000131258 TRANSLATION protein_coding - - 5 506.0 15.0 0.2 0.0 112.7 0.0 -4,-5 0.7932 - 18.0 PRINCIPAL:1 ENSMUSG00000057540 Or14c46 ENSMUST00000081918 ENSMUSP00000080589 TRANSLATION protein_coding - CCDS21423.1 - 332.0 0.0 1.0 0.1 153.0 6.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057540 Or14c46 ENSMUST00000217724 ENSMUSP00000151989 TRANSLATION protein_coding - CCDS21423.1 5 332.0 0.0 1.0 0.1 153.0 6.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000008734 Gprc5b ENSMUST00000207582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008734 Gprc5b ENSMUST00000008878 ENSMUSP00000008878 TRANSLATION protein_coding - CCDS21777.1 1 410.0 0.0 1.0 2.3 125.8 7.0 0,-3 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000008734 Gprc5b ENSMUST00000207614 - NO_TRANSLATION retained_intron ENSMUSG00000008734 Gprc5b ENSMUST00000208394 ENSMUSP00000146777 TRANSLATION protein_coding - CCDS85400.1 1 411.0 0.0 1.0 0.3 125.8 7.0 0,-3 0.6239 4 8.0 ALTERNATIVE:2 ENSMUSG00000030835 Nomo1 ENSMUST00000182564 - NO_TRANSLATION retained_intron ENSMUSG00000030835 Nomo1 ENSMUST00000182842 - NO_TRANSLATION retained_intron ENSMUSG00000030835 Nomo1 ENSMUST00000182305 - NO_TRANSLATION retained_intron ENSMUSG00000030835 Nomo1 ENSMUST00000033121 ENSMUSP00000033121 TRANSLATION protein_coding - CCDS21273.1 1 1214.0 0.0 0.0 7.3 34.7 0.0 3,-2 1.0 39 8.0 PRINCIPAL:1 ENSMUSG00000030835 Nomo1 ENSMUST00000182531 - NO_TRANSLATION retained_intron ENSMUSG00000030987 Stim1 ENSMUST00000210834 - NO_TRANSLATION retained_intron ENSMUSG00000030987 Stim1 ENSMUST00000209255 ENSMUSP00000147443 TRANSLATION protein_coding - - 5 793.0 5.0 8.93 5.8 179.1 1.0 3,-2 0.6315 19 14.824 MINOR ENSMUSG00000030987 Stim1 ENSMUST00000210266 - NO_TRANSLATION retained_intron ENSMUSG00000030987 Stim1 ENSMUST00000211058 ENSMUSP00000147314 TRANSLATION protein_coding start/stop - 2 207.0 0.0 2.6 0.0 149.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000030987 Stim1 ENSMUST00000211457 ENSMUSP00000147410 TRANSLATION protein_coding - - 5 540.0 5.0 8.93 7.0 179.1 1.0 3,-2 0.6604 12 15.277 ALTERNATIVE:1 ENSMUSG00000030987 Stim1 ENSMUST00000210761 - NO_TRANSLATION retained_intron ENSMUSG00000030987 Stim1 ENSMUST00000210544 - NO_TRANSLATION retained_intron ENSMUSG00000030987 Stim1 ENSMUST00000211141 - NO_TRANSLATION retained_intron ENSMUSG00000030987 Stim1 ENSMUST00000033289 ENSMUSP00000033289 TRANSLATION protein_coding - CCDS21530.1 1 685.0 5.0 8.93 8.9 179.1 1.0 3,-2 1.0 18 16.0 PRINCIPAL:2 ENSMUSG00000000214 Th ENSMUST00000123057 ENSMUSP00000122162 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.0 0.0 51.1 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000000214 Th ENSMUST00000140344 ENSMUSP00000115434 TRANSLATION protein_coding stop - 3 171.0 0.0 3.182 0.0 56.2 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000000214 Th ENSMUST00000000219 ENSMUSP00000000219 TRANSLATION protein_coding - CCDS22036.1 1 498.0 14.0 10.55 14.9 676.9 0.0 -4,-2 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000000214 Th ENSMUST00000138482 ENSMUSP00000123661 TRANSLATION nonsense_mediated_decay start - 5 45.0 0.0 1.58 0.0 62.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000214 Th ENSMUST00000105929 ENSMUSP00000101549 TRANSLATION protein_coding - - 1 403.0 14.0 9.382 0.0 592.0 0.0 -4,-5 0.0162 9 10.572 MINOR ENSMUSG00000000214 Th ENSMUST00000124951 ENSMUSP00000122876 TRANSLATION nonsense_mediated_decay - - 5 232.0 0.0 4.3 0.0 185.0 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000059077 Pth ENSMUST00000079793 ENSMUSP00000078723 TRANSLATION protein_coding - CCDS21756.1 1 115.0 0.0 0.6 10.0 27.3 0.0 3,-1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000006315 Tmem147 ENSMUST00000208169 ENSMUSP00000146893 TRANSLATION protein_coding - - 5 150.0 0.0 4.25 1.0 94.1 4.0 -4,-5 0.003 1 0.84 MINOR ENSMUSG00000006315 Tmem147 ENSMUST00000207779 ENSMUSP00000146550 TRANSLATION nonsense_mediated_decay - - 1 112.0 0.0 3.0 0.0 130.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000006315 Tmem147 ENSMUST00000207955 - NO_TRANSLATION retained_intron ENSMUSG00000006315 Tmem147 ENSMUST00000209065 ENSMUSP00000146918 TRANSLATION protein_coding - - 2 175.0 0.0 5.33 8.0 137.5 8.0 -4,-7 0.1142 2 4.658 MINOR ENSMUSG00000006315 Tmem147 ENSMUST00000207263 ENSMUSP00000146763 TRANSLATION nonsense_mediated_decay - - 3 49.0 0.0 1.5 0.0 71.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000006315 Tmem147 ENSMUST00000006478 ENSMUSP00000006478 TRANSLATION protein_coding - CCDS39890.1 1 224.0 0.0 6.83 31.8 225.0 8.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000006315 Tmem147 ENSMUST00000207296 ENSMUSP00000147083 TRANSLATION protein_coding - - 3 231.0 0.0 6.5 31.8 212.3 7.0 -4,-6 0.7631 3 14.578 MINOR ENSMUSG00000118553 Gm38999 ENSMUST00000239023 ENSMUSP00000159166 TRANSLATION protein_coding - - - 185.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.5824 - 0.0 PRINCIPAL:1 ENSMUSG00000011350 Gm5893 ENSMUST00000155799 - NO_TRANSLATION retained_intron ENSMUSG00000011350 Gm5893 ENSMUST00000164057 ENSMUSP00000159930 TRANSLATION protein_coding - - 5 471.0 0.0 5.698 0.0 156.6 2.0 -,- 0.7602 1 12.0 PRINCIPAL:1 ENSMUSG00000011350 Gm5893 ENSMUST00000135286 ENSMUSP00000159931 TRANSLATION nonsense_mediated_decay - - 1 83.0 0.0 1.0 0.0 0.0 1.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000096304 Gm16451 ENSMUST00000173484 ENSMUSP00000133729 TRANSLATION protein_coding - CCDS71905.1 - 307.0 0.0 0.0 0.4 56.2 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030589 Rasgrp4 ENSMUST00000032811 ENSMUSP00000032811 TRANSLATION protein_coding - CCDS85257.1 1 673.0 11.0 12.152 6.4 179.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:4 ENSMUSG00000030589 Rasgrp4 ENSMUST00000161522 ENSMUSP00000123718 TRANSLATION protein_coding - - 5 659.0 11.0 12.152 1.0 179.5 0.0 -4,-7 0.2532 1 14.0 MINOR ENSMUSG00000030589 Rasgrp4 ENSMUST00000160194 ENSMUSP00000124908 TRANSLATION protein_coding stop - 5 429.0 0.0 8.6 0.0 126.1 0.0 -4,-7 0.0003 1 -2.0 MINOR ENSMUSG00000030589 Rasgrp4 ENSMUST00000205027 ENSMUSP00000145186 TRANSLATION protein_coding - - 5 484.0 11.0 7.572 2.1 42.9 0.0 -4,-7 0.0665 - 7.408 MINOR ENSMUSG00000030589 Rasgrp4 ENSMUST00000203380 ENSMUSP00000144753 TRANSLATION protein_coding - - 5 604.0 11.0 11.152 1.0 139.5 0.0 -4,-7 0.0226 - 11.002 MINOR ENSMUSG00000030589 Rasgrp4 ENSMUST00000160396 ENSMUSP00000125544 TRANSLATION protein_coding start - 5 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030589 Rasgrp4 ENSMUST00000203070 ENSMUSP00000145352 TRANSLATION protein_coding - - 5 581.0 11.0 10.402 1.0 137.4 0.0 -4,-7 0.0213 - 9.502 MINOR ENSMUSG00000030589 Rasgrp4 ENSMUST00000159975 ENSMUSP00000125137 TRANSLATION protein_coding - CCDS85258.1 1 678.0 11.0 12.152 5.7 176.9 0.0 -4,-7 0.8687 1 15.406 ALTERNATIVE:1 ENSMUSG00000030589 Rasgrp4 ENSMUST00000162946 - NO_TRANSLATION retained_intron ENSMUSG00000030589 Rasgrp4 ENSMUST00000204194 ENSMUSP00000145259 TRANSLATION protein_coding - - 5 576.0 11.0 9.322 2.0 67.9 0.0 -4,-7 0.0708 1 7.712 MINOR ENSMUSG00000030589 Rasgrp4 ENSMUST00000159898 - NO_TRANSLATION retained_intron ENSMUSG00000030589 Rasgrp4 ENSMUST00000159351 ENSMUSP00000124183 TRANSLATION nonsense_mediated_decay - - 1 578.0 6.0 11.36 0.0 136.6 0.0 -4,-7 0.0083 1 -2.0 MINOR ENSMUSG00000030589 Rasgrp4 ENSMUST00000204845 ENSMUSP00000144774 TRANSLATION protein_coding - - 5 639.0 11.0 11.072 1.0 139.3 0.0 -4,-7 0.0331 1 10.84 MINOR ENSMUSG00000096735 Vmn1r79 ENSMUST00000226953 ENSMUSP00000154616 TRANSLATION protein_coding - CCDS52017.1 - 306.0 0.0 0.2 0.4 117.5 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096735 Vmn1r79 ENSMUST00000062811 ENSMUSP00000056232 TRANSLATION protein_coding - CCDS52017.1 - 306.0 0.0 0.2 0.4 117.5 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096735 Vmn1r79 ENSMUST00000227530 ENSMUSP00000154092 TRANSLATION protein_coding - CCDS52017.1 - 306.0 0.0 0.2 0.4 117.5 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058239 Usf2 ENSMUST00000108119 ENSMUSP00000132021 TRANSLATION protein_coding - - 5 279.0 0.0 3.58 3.5 65.1 0.0 -4,-5 0.5113 4 8.892 MINOR ENSMUSG00000058239 Usf2 ENSMUST00000166340 ENSMUSP00000132232 TRANSLATION nonsense_mediated_decay start - 1 38.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058239 Usf2 ENSMUST00000168731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058239 Usf2 ENSMUST00000170442 ENSMUSP00000130298 TRANSLATION protein_coding start - 5 293.0 0.0 3.25 0.0 40.8 0.0 -4,-6 0.0035 5 -2.0 MINOR ENSMUSG00000058239 Usf2 ENSMUST00000162228 ENSMUSP00000125520 TRANSLATION protein_coding - - 5 319.0 0.0 3.58 6.2 65.1 0.0 -4,-5 0.7982 5 9.858 ALTERNATIVE:1 ENSMUSG00000058239 Usf2 ENSMUST00000170699 ENSMUSP00000127908 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000058239 Usf2 ENSMUST00000167285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058239 Usf2 ENSMUST00000058860 ENSMUSP00000132256 TRANSLATION protein_coding - CCDS21118.1 1 346.0 0.0 3.58 6.6 65.1 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000058239 Usf2 ENSMUST00000171338 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058239 Usf2 ENSMUST00000172417 ENSMUSP00000132833 TRANSLATION protein_coding - - 5 215.0 0.0 3.58 1.0 65.1 0.0 -4,-5 0.1913 4 8.0 MINOR ENSMUSG00000058239 Usf2 ENSMUST00000169496 - NO_TRANSLATION retained_intron ENSMUSG00000059042 Klk1b9 ENSMUST00000081399 ENSMUSP00000080133 TRANSLATION protein_coding - CCDS21191.1 1 261.0 14.0 4.0 6.4 241.5 0.0 4,-1 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000042831 Alkbh6 ENSMUST00000060834 ENSMUSP00000051515 TRANSLATION protein_coding - CCDS21085.1 1 238.0 14.0 5.41 11.8 0.0 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000042831 Alkbh6 ENSMUST00000144951 - NO_TRANSLATION retained_intron ENSMUSG00000042831 Alkbh6 ENSMUST00000137870 - NO_TRANSLATION retained_intron ENSMUSG00000042831 Alkbh6 ENSMUST00000139121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042831 Alkbh6 ENSMUST00000135882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042831 Alkbh6 ENSMUST00000148858 - NO_TRANSLATION retained_intron ENSMUSG00000042831 Alkbh6 ENSMUST00000143369 - NO_TRANSLATION retained_intron ENSMUSG00000042831 Alkbh6 ENSMUST00000132193 - NO_TRANSLATION retained_intron ENSMUSG00000042831 Alkbh6 ENSMUST00000135319 - NO_TRANSLATION retained_intron ENSMUSG00000042831 Alkbh6 ENSMUST00000137550 ENSMUSP00000115896 TRANSLATION nonsense_mediated_decay - - 5 112.0 3.0 2.58 0.0 0.0 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000042831 Alkbh6 ENSMUST00000136887 ENSMUSP00000121953 TRANSLATION protein_coding stop - 2 215.0 14.0 4.58 0.0 0.0 0.0 -4,-5 0.0112 1 -2.0 MINOR ENSMUSG00000066406 Akap13 ENSMUST00000207923 ENSMUSP00000146990 TRANSLATION protein_coding start/stop - 1 870.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0148 19 -2.0 MINOR ENSMUSG00000066406 Akap13 ENSMUST00000166315 ENSMUSP00000129784 TRANSLATION protein_coding - CCDS52276.1 5 2776.0 8.0 7.08 0.0 132.9 0.0 -4,-7 0.9134 52 14.0 ALTERNATIVE:2 ENSMUSG00000066406 Akap13 ENSMUST00000207511 - NO_TRANSLATION retained_intron ENSMUSG00000066406 Akap13 ENSMUST00000208009 - NO_TRANSLATION retained_intron ENSMUSG00000066406 Akap13 ENSMUST00000207750 ENSMUSP00000147237 TRANSLATION protein_coding - - 5 2794.0 8.0 7.08 0.0 132.9 0.0 -4,-7 1.0 52 14.0 PRINCIPAL:4 ENSMUSG00000066406 Akap13 ENSMUST00000209040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066406 Akap13 ENSMUST00000208053 - NO_TRANSLATION retained_intron ENSMUSG00000066406 Akap13 ENSMUST00000207998 ENSMUSP00000146503 TRANSLATION protein_coding start/stop - 1 423.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0039 8 -2.0 MINOR ENSMUSG00000066406 Akap13 ENSMUST00000208248 - NO_TRANSLATION retained_intron ENSMUSG00000066406 Akap13 ENSMUST00000208187 - NO_TRANSLATION retained_intron ENSMUSG00000066406 Akap13 ENSMUST00000208708 ENSMUSP00000146779 TRANSLATION protein_coding start/stop - 5 569.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0064 13 -2.0 MINOR ENSMUSG00000066406 Akap13 ENSMUST00000239346 ENSMUSP00000159238 TRANSLATION protein_coding stop - - 121.0 3.0 0.0 0.0 0.0 0.0 -4,-2 0.0007 - -2.0 MINOR ENSMUSG00000066406 Akap13 ENSMUST00000208456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066406 Akap13 ENSMUST00000207239 ENSMUSP00000146401 TRANSLATION protein_coding stop - 1 607.0 8.0 7.08 0.0 132.9 0.0 -4,-6 0.0701 11 -2.0 MINOR ENSMUSG00000066406 Akap13 ENSMUST00000208182 - NO_TRANSLATION retained_intron ENSMUSG00000066406 Akap13 ENSMUST00000207751 - NO_TRANSLATION retained_intron ENSMUSG00000066406 Akap13 ENSMUST00000207079 - NO_TRANSLATION retained_intron ENSMUSG00000096257 Ccer2 ENSMUST00000178767 ENSMUSP00000137487 TRANSLATION protein_coding - CCDS57533.1 5 274.0 0.0 0.0 0.1 0.0 0.0 3,-2 0.9708 - 0.0 PRINCIPAL:1 ENSMUSG00000055407 Map6 ENSMUST00000208605 ENSMUSP00000146897 TRANSLATION protein_coding - CCDS40029.1 1 306.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.2126 13 0.0 ALTERNATIVE:2 ENSMUSG00000055407 Map6 ENSMUST00000107100 ENSMUSP00000102717 TRANSLATION protein_coding - CCDS40029.1 1 306.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.2126 13 0.0 ALTERNATIVE:2 ENSMUSG00000055407 Map6 ENSMUST00000208978 - NO_TRANSLATION retained_intron ENSMUSG00000055407 Map6 ENSMUST00000208924 ENSMUSP00000146954 TRANSLATION protein_coding - - 1 703.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6309 60 0.0 PRINCIPAL:2 ENSMUSG00000055407 Map6 ENSMUST00000122101 ENSMUSP00000113183 TRANSLATION protein_coding - - 1 509.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.075 25 0.0 ALTERNATIVE:2 ENSMUSG00000055407 Map6 ENSMUST00000209094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055407 Map6 ENSMUST00000068973 ENSMUSP00000064787 TRANSLATION protein_coding - CCDS21479.1 1 906.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.3316 72 0.0 ALTERNATIVE:2 ENSMUSG00000055407 Map6 ENSMUST00000127492 ENSMUSP00000146340 TRANSLATION protein_coding - CCDS85345.1 1 568.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2624 28 0.0 ALTERNATIVE:2 ENSMUSG00000055407 Map6 ENSMUST00000207883 ENSMUSP00000146585 TRANSLATION protein_coding - CCDS21479.1 1 906.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.3316 72 0.0 ALTERNATIVE:2 ENSMUSG00000002603 Tgfb1 ENSMUST00000206584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002603 Tgfb1 ENSMUST00000206348 - NO_TRANSLATION retained_intron ENSMUSG00000002603 Tgfb1 ENSMUST00000002678 ENSMUSP00000002678 TRANSLATION protein_coding - CCDS20993.1 1 390.0 0.0 6.35 2.4 210.8 0.0 1,-2 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000002603 Tgfb1 ENSMUST00000171757 - NO_TRANSLATION retained_intron ENSMUSG00000002603 Tgfb1 ENSMUST00000169009 ENSMUSP00000130413 TRANSLATION nonsense_mediated_decay - - 3 49.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000061099 Gapdhs ENSMUST00000074758 ENSMUSP00000074317 TRANSLATION protein_coding - CCDS21109.1 5 438.0 24.0 9.49 0.0 357.6 0.0 -4,-2 0.5668 10 14.0 ALTERNATIVE:2 ENSMUSG00000061099 Gapdhs ENSMUST00000182634 ENSMUSP00000138634 TRANSLATION protein_coding - CCDS71933.1 1 440.0 24.0 9.49 0.0 357.6 0.0 -4,-2 1.0 11 14.0 PRINCIPAL:2 ENSMUSG00000061099 Gapdhs ENSMUST00000182067 ENSMUSP00000138697 TRANSLATION nonsense_mediated_decay start - 3 67.0 6.0 1.28 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000070348 Ccnd1 ENSMUST00000093962 ENSMUSP00000091495 TRANSLATION protein_coding - CCDS22055.1 1 295.0 0.0 5.0 34.6 204.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000070348 Ccnd1 ENSMUST00000135985 - NO_TRANSLATION retained_intron ENSMUSG00000070348 Ccnd1 ENSMUST00000208193 - NO_TRANSLATION retained_intron ENSMUSG00000121575 ENSMUSG00000121575 ENSMUST00000249248 ENSMUSP00000159628 TRANSLATION protein_coding start - - 117.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.5842 - -2.0 PRINCIPAL:1 ENSMUSG00000063808 Gpatch1 ENSMUST00000131213 ENSMUSP00000117475 TRANSLATION nonsense_mediated_decay - - 1 883.0 0.0 0.0 0.0 152.2 0.0 -4,-5 0.0886 10 -2.0 MINOR ENSMUSG00000063808 Gpatch1 ENSMUST00000131143 ENSMUSP00000121711 TRANSLATION nonsense_mediated_decay - - 1 98.0 0.0 0.0 0.0 114.7 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000063808 Gpatch1 ENSMUST00000153778 - NO_TRANSLATION retained_intron ENSMUSG00000063808 Gpatch1 ENSMUST00000079693 ENSMUSP00000078632 TRANSLATION protein_coding - CCDS21147.1 1 930.0 0.0 0.0 5.0 152.2 0.0 -4,-5 1.0 10 8.0 PRINCIPAL:1 ENSMUSG00000063808 Gpatch1 ENSMUST00000206758 - NO_TRANSLATION retained_intron ENSMUSG00000030963 Umod ENSMUST00000207261 ENSMUSP00000147128 TRANSLATION protein_coding stop - 3 87.0 6.0 0.6 0.0 28.6 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000030963 Umod ENSMUST00000207729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030963 Umod ENSMUST00000209095 ENSMUSP00000146652 TRANSLATION protein_coding - CCDS21780.1 1 642.0 16.0 6.85 0.0 268.6 0.0 4,-1 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000030963 Umod ENSMUST00000207460 ENSMUSP00000146628 TRANSLATION protein_coding stop - 3 187.0 16.0 1.1 0.0 97.8 0.0 4,-1 0.002 1 -2.0 MINOR ENSMUSG00000030963 Umod ENSMUST00000033263 ENSMUSP00000033263 TRANSLATION protein_coding - CCDS21780.1 1 642.0 16.0 6.85 0.0 268.6 0.0 4,-1 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000030963 Umod ENSMUST00000207378 ENSMUSP00000147039 TRANSLATION nonsense_mediated_decay start - 5 77.0 6.0 0.6 0.0 28.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000107482 Etfbl ENSMUST00000203633 ENSMUSP00000145061 TRANSLATION nonsense_mediated_decay,RT - - 5 221.0 18.0 4.625 0.0 155.7 0.0 -4,-7 0.7576 - -2.0 PRINCIPAL:5 ENSMUSG00000107482 Etfbl ENSMUST00000204680 ENSMUSP00000145493 TRANSLATION nonsense_mediated_decay,RT - - 3 168.0 17.0 3.625 0.0 104.1 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000056856 Jakmip3 ENSMUST00000238616 - NO_TRANSLATION retained_intron ENSMUSG00000056856 Jakmip3 ENSMUST00000106111 ENSMUSP00000101717 TRANSLATION protein_coding - - 5 772.0 0.0 0.0 0.4 283.2 0.0 -4,-5 0.1325 7 2.0 ALTERNATIVE:2 ENSMUSG00000056856 Jakmip3 ENSMUST00000238324 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056856 Jakmip3 ENSMUST00000166163 ENSMUSP00000130207 TRANSLATION protein_coding - - 5 844.0 0.0 0.0 0.4 283.2 0.0 -4,-5 0.7902 7 2.0 PRINCIPAL:2 ENSMUSG00000056856 Jakmip3 ENSMUST00000209297 - NO_TRANSLATION retained_intron ENSMUSG00000070570 Slc17a7 ENSMUST00000209634 ENSMUSP00000147661 TRANSLATION protein_coding - - 5 585.0 0.0 8.85 0.1 165.2 8.0 -4,-7 0.1575 7 12.0 MINOR ENSMUSG00000070570 Slc17a7 ENSMUST00000210540 - NO_TRANSLATION retained_intron ENSMUSG00000070570 Slc17a7 ENSMUST00000210498 - NO_TRANSLATION retained_intron ENSMUSG00000070570 Slc17a7 ENSMUST00000085374 ENSMUSP00000082489 TRANSLATION protein_coding - CCDS52244.1 1 560.0 0.0 8.61 8.7 161.9 8.0 -4,-7 1.0 7 14.322 PRINCIPAL:1 ENSMUSG00000070570 Slc17a7 ENSMUST00000211652 - NO_TRANSLATION retained_intron ENSMUSG00000108793 Gm45213 ENSMUST00000206065 ENSMUSP00000145765 TRANSLATION protein_coding,RT start/stop - 5 101.0 0.0 1.16 0.0 0.0 0.0 -4,-5 0.6782 - -2.0 PRINCIPAL:1 ENSMUSG00000042502 Cd2bp2 ENSMUST00000206587 ENSMUSP00000145779 TRANSLATION protein_coding stop - 2 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042502 Cd2bp2 ENSMUST00000035771 ENSMUSP00000044790 TRANSLATION protein_coding - CCDS21859.1 1 342.0 0.0 2.0 10.3 65.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000042502 Cd2bp2 ENSMUST00000205321 ENSMUSP00000145549 TRANSLATION protein_coding stop - 2 162.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042502 Cd2bp2 ENSMUST00000205355 ENSMUSP00000145634 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042502 Cd2bp2 ENSMUST00000205525 - NO_TRANSLATION retained_intron ENSMUSG00000042502 Cd2bp2 ENSMUST00000166791 ENSMUSP00000132963 TRANSLATION protein_coding - CCDS21859.1 1 342.0 0.0 2.0 10.3 65.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000042502 Cd2bp2 ENSMUST00000206081 ENSMUSP00000146087 TRANSLATION protein_coding stop - 2 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042502 Cd2bp2 ENSMUST00000206026 ENSMUSP00000146167 TRANSLATION protein_coding - CCDS21859.1 1 342.0 0.0 2.0 10.3 65.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000042502 Cd2bp2 ENSMUST00000205316 ENSMUSP00000145888 TRANSLATION protein_coding - CCDS21859.1 1 342.0 0.0 2.0 10.3 65.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000054083 Capn12 ENSMUST00000066880 ENSMUSP00000069055 TRANSLATION protein_coding - CCDS52166.1 5 720.0 10.0 11.375 5.7 503.3 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000054083 Capn12 ENSMUST00000208238 - NO_TRANSLATION retained_intron ENSMUSG00000054083 Capn12 ENSMUST00000208299 - NO_TRANSLATION retained_intron ENSMUSG00000030722 Nfatc2ip ENSMUST00000075671 ENSMUSP00000075094 TRANSLATION protein_coding - CCDS21827.1 1 412.0 0.0 4.0 0.0 43.1 0.0 -4,-7 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000030722 Nfatc2ip ENSMUST00000142947 ENSMUSP00000145755 TRANSLATION protein_coding start - 5 110.0 0.0 2.0 0.0 41.4 0.0 -4,-5 0.0006 1 -2.0 MINOR ENSMUSG00000078800 Bsph2 ENSMUST00000202285 ENSMUSP00000144514 TRANSLATION nonsense_mediated_decay - - 1 86.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000078800 Bsph2 ENSMUST00000108526 ENSMUSP00000104166 TRANSLATION protein_coding - CCDS52028.1 1 131.0 9.0 2.35 2.2 98.3 0.0 -2,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000030967 Zranb1 ENSMUST00000210507 ENSMUSP00000147317 TRANSLATION nonsense_mediated_decay - - 1 372.0 12.0 1.0 0.0 43.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030967 Zranb1 ENSMUST00000033265 ENSMUSP00000033265 TRANSLATION protein_coding - CCDS21929.1 2 708.0 12.0 6.75 9.2 171.6 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000030967 Zranb1 ENSMUST00000106157 ENSMUSP00000101763 TRANSLATION protein_coding - CCDS21929.1 5 708.0 12.0 6.75 9.2 171.6 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000030967 Zranb1 ENSMUST00000215716 ENSMUSP00000148867 TRANSLATION protein_coding - - 5 734.0 12.0 6.75 5.7 171.6 0.0 -4,-5 0.687 1 19.719 MINOR ENSMUSG00000030967 Zranb1 ENSMUST00000153335 - NO_TRANSLATION retained_intron ENSMUSG00000053291 Rab4b ENSMUST00000128409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053291 Rab4b ENSMUST00000153511 ENSMUSP00000138477 TRANSLATION nonsense_mediated_decay - - 5 103.0 13.0 2.83 0.0 115.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000053291 Rab4b ENSMUST00000093040 ENSMUSP00000090727 TRANSLATION protein_coding - CCDS21012.1 1 213.0 22.0 5.91 31.8 194.3 0.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000053291 Rab4b ENSMUST00000131420 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053291 Rab4b ENSMUST00000131278 - NO_TRANSLATION retained_intron ENSMUSG00000053291 Rab4b ENSMUST00000134462 - NO_TRANSLATION retained_intron ENSMUSG00000053291 Rab4b ENSMUST00000152753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053291 Rab4b ENSMUST00000141906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094531 Or52e8 ENSMUST00000217091 ENSMUSP00000150911 TRANSLATION protein_coding - - 5 317.0 0.0 1.0 3.9 390.5 6.0 -4,-7 0.3608 - 12.756 MINOR ENSMUSG00000094531 Or52e8 ENSMUST00000210963 ENSMUSP00000148008 TRANSLATION protein_coding - - 5 317.0 0.0 1.0 3.9 390.5 6.0 -4,-7 0.3608 - 12.756 MINOR ENSMUSG00000094531 Or52e8 ENSMUST00000078710 ENSMUSP00000077774 TRANSLATION protein_coding - CCDS21635.1 - 313.0 0.0 1.0 12.5 390.5 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003435 Supt5 ENSMUST00000208726 - NO_TRANSLATION retained_intron ENSMUSG00000003435 Supt5 ENSMUST00000208367 - NO_TRANSLATION retained_intron ENSMUSG00000003435 Supt5 ENSMUST00000003527 ENSMUSP00000003527 TRANSLATION protein_coding - CCDS39857.1 1 1082.0 0.0 13.6725 18.0 185.5 0.0 -4,-5 1.0 30 16.0 PRINCIPAL:1 ENSMUSG00000003435 Supt5 ENSMUST00000207563 ENSMUSP00000146961 TRANSLATION nonsense_mediated_decay - - 1 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003435 Supt5 ENSMUST00000207879 - NO_TRANSLATION retained_intron ENSMUSG00000003435 Supt5 ENSMUST00000208243 ENSMUSP00000147059 TRANSLATION nonsense_mediated_decay start - 3 149.0 0.0 2.23 0.0 101.4 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000003435 Supt5 ENSMUST00000209105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003435 Supt5 ENSMUST00000209141 ENSMUSP00000147164 TRANSLATION protein_coding - CCDS39857.1 1 1082.0 0.0 13.6725 18.0 185.5 0.0 -4,-5 1.0 30 16.0 PRINCIPAL:1 ENSMUSG00000095191 Vmn1r249 ENSMUST00000105195 ENSMUSP00000100830 TRANSLATION protein_coding - CCDS52103.1 - 307.0 0.0 0.0 0.4 56.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000052833 Sae1 ENSMUST00000211741 ENSMUSP00000147771 TRANSLATION protein_coding - CCDS85221.1 1 328.0 0.0 7.115 0.0 155.6 0.0 -4,-5 0.0153 13 9.798 MINOR ENSMUSG00000052833 Sae1 ENSMUST00000094815 ENSMUSP00000092409 TRANSLATION protein_coding - CCDS20848.1 1 350.0 0.0 7.95 13.9 164.5 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000052833 Sae1 ENSMUST00000210999 ENSMUSP00000147409 TRANSLATION protein_coding - CCDS20848.1 1 350.0 0.0 7.95 13.9 164.5 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000052833 Sae1 ENSMUST00000209749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035951 Ascl3 ENSMUST00000035372 ENSMUSP00000037702 TRANSLATION protein_coding - CCDS21737.1 1 174.0 0.0 0.6 5.2 58.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031075 Ano1 ENSMUST00000118556 ENSMUSP00000113899 TRANSLATION protein_coding - - 1 956.0 0.0 16.219 1.3 806.8 10.0 -4,-5 0.5567 11 6.214 ALTERNATIVE:2 ENSMUSG00000031075 Ano1 ENSMUST00000121758 ENSMUSP00000112616 TRANSLATION protein_coding - - 1 960.0 0.0 16.219 2.4 804.9 10.0 -4,-5 1.0 12 7.0 PRINCIPAL:2 ENSMUSG00000031075 Ano1 ENSMUST00000155175 ENSMUSP00000120306 TRANSLATION protein_coding stop - 5 266.0 0.0 3.1 0.0 188.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000031075 Ano1 ENSMUST00000131571 - NO_TRANSLATION retained_intron ENSMUSG00000031075 Ano1 ENSMUST00000208985 - NO_TRANSLATION retained_intron ENSMUSG00000031075 Ano1 ENSMUST00000033393 ENSMUSP00000033393 TRANSLATION protein_coding - - 5 956.0 0.0 16.219 1.3 806.8 10.0 -4,-5 0.5567 11 6.214 ALTERNATIVE:2 ENSMUSG00000031075 Ano1 ENSMUST00000131731 ENSMUSP00000118206 TRANSLATION protein_coding stop - 2 230.0 0.0 2.1 0.0 137.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031075 Ano1 ENSMUST00000141632 - NO_TRANSLATION retained_intron ENSMUSG00000031075 Ano1 ENSMUST00000238848 ENSMUSP00000159034 TRANSLATION protein_coding - - - 982.0 0.0 16.0315 2.3 800.1 10.0 -4,-5 0.7267 11 6.557 ALTERNATIVE:2 ENSMUSG00000031075 Ano1 ENSMUST00000152531 ENSMUSP00000119653 TRANSLATION protein_coding start/stop - 5 335.0 0.0 7.25 0.0 344.6 5.0 -4,-5 0.0052 2 -2.0 MINOR ENSMUSG00000031075 Ano1 ENSMUST00000208094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046716 Vmn1r67 ENSMUST00000055964 ENSMUSP00000060746 TRANSLATION protein_coding - CCDS39766.1 - 305.0 0.0 0.6 0.4 103.0 6.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046716 Vmn1r67 ENSMUST00000226237 ENSMUSP00000154237 TRANSLATION protein_coding - - - 244.0 0.0 0.0 0.0 99.1 4.0 -4,-5 0.0176 - 5.766 MINOR ENSMUSG00000036882 Arhgap33 ENSMUST00000207860 ENSMUSP00000146602 TRANSLATION protein_coding - CCDS21095.1 1 1305.0 0.0 6.15 0.1 191.4 0.0 -4,-7 1.0 19 8.0 PRINCIPAL:2 ENSMUSG00000036882 Arhgap33 ENSMUST00000208723 - NO_TRANSLATION retained_intron ENSMUSG00000036882 Arhgap33 ENSMUST00000208491 ENSMUSP00000147001 TRANSLATION protein_coding stop - 3 145.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000036882 Arhgap33 ENSMUST00000208538 ENSMUSP00000146767 TRANSLATION protein_coding - CCDS21095.1 1 1305.0 0.0 6.15 0.1 191.4 0.0 -4,-7 1.0 19 8.0 PRINCIPAL:2 ENSMUSG00000036882 Arhgap33 ENSMUST00000207637 - NO_TRANSLATION retained_intron ENSMUSG00000036882 Arhgap33 ENSMUST00000044338 ENSMUSP00000038412 TRANSLATION protein_coding - CCDS21095.1 1 1305.0 0.0 6.15 0.1 191.4 0.0 -4,-7 1.0 19 8.0 PRINCIPAL:2 ENSMUSG00000036882 Arhgap33 ENSMUST00000208522 ENSMUSP00000146766 TRANSLATION protein_coding - - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 0.0 MINOR ENSMUSG00000036882 Arhgap33 ENSMUST00000207858 ENSMUSP00000146571 TRANSLATION protein_coding - CCDS85264.1 1 1281.0 0.0 6.15 0.0 191.4 0.0 -4,-5 0.6219 18 8.0 ALTERNATIVE:2 ENSMUSG00000073926 Or52d3 ENSMUST00000098174 ENSMUSP00000095776 TRANSLATION protein_coding - CCDS21619.1 - 317.0 0.0 1.0 10.5 368.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073926 Or52d3 ENSMUST00000217466 ENSMUSP00000149192 TRANSLATION protein_coding - CCDS21619.1 5 317.0 0.0 1.0 10.5 368.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073926 Or52d3 ENSMUST00000215585 ENSMUSP00000149455 TRANSLATION protein_coding - CCDS21619.1 5 317.0 0.0 1.0 10.5 368.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000089942 Pira2 ENSMUST00000108615 ENSMUSP00000104255 TRANSLATION protein_coding - CCDS39731.1 1 680.0 0.0 6.0 0.4 127.9 0.0 3,-2 0.7136 - 8.0 ALTERNATIVE:2 ENSMUSG00000089942 Pira2 ENSMUST00000119469 ENSMUSP00000113857 TRANSLATION protein_coding - - 1 663.0 0.0 6.0 0.1 127.9 0.0 3,-2 0.8546 - 8.0 PRINCIPAL:4 ENSMUSG00000003444 Med29 ENSMUST00000003536 ENSMUSP00000003536 TRANSLATION protein_coding - CCDS21042.1 1 199.0 0.0 2.33 4.2 180.9 0.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000058230 Arhgap35 ENSMUST00000075845 ENSMUSP00000075242 TRANSLATION protein_coding - CCDS20851.1 1 1499.0 17.0 4.75 11.0 322.5 0.0 -4,-6 1.0 27 21.0 PRINCIPAL:1 ENSMUSG00000073805 Insyn2a ENSMUST00000171394 ENSMUSP00000129222 TRANSLATION protein_coding - CCDS52419.1 5 470.0 0.0 1.35 4.5 672.3 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000073805 Insyn2a ENSMUST00000210055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073805 Insyn2a ENSMUST00000210826 - NO_TRANSLATION retained_intron ENSMUSG00000060260 Pwwp2b ENSMUST00000172136 ENSMUSP00000130888 TRANSLATION protein_coding - CCDS52427.1 1 600.0 0.0 2.0 0.4 52.2 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000060260 Pwwp2b ENSMUST00000093993 ENSMUSP00000091529 TRANSLATION protein_coding - CCDS40169.1 1 509.0 0.0 1.0 0.4 0.0 0.0 -4,-7 0.035 1 3.0 MINOR ENSMUSG00000060260 Pwwp2b ENSMUST00000209721 - NO_TRANSLATION retained_intron ENSMUSG00000030402 Ppm1n ENSMUST00000205498 - NO_TRANSLATION retained_intron ENSMUSG00000030402 Ppm1n ENSMUST00000205792 - NO_TRANSLATION retained_intron ENSMUSG00000030402 Ppm1n ENSMUST00000032560 ENSMUSP00000032560 TRANSLATION protein_coding - CCDS20895.1 1 404.0 11.0 3.75 0.1 302.9 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030402 Ppm1n ENSMUST00000206782 - NO_TRANSLATION retained_intron ENSMUSG00000038459 Abhd17c ENSMUST00000208271 - NO_TRANSLATION retained_intron ENSMUSG00000038459 Abhd17c ENSMUST00000117085 ENSMUSP00000112988 TRANSLATION protein_coding - CCDS21417.2 1 320.0 3.0 2.6 2.5 28.6 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000038459 Abhd17c ENSMUST00000131505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036733 Rbm42 ENSMUST00000108141 ENSMUSP00000103776 TRANSLATION protein_coding - - 5 449.0 0.0 2.4 0.1 64.4 0.0 -4,-6 0.0418 7 8.0 ALTERNATIVE:2 ENSMUSG00000036733 Rbm42 ENSMUST00000042726 ENSMUSP00000040005 TRANSLATION protein_coding - CCDS52179.1 1 478.0 0.0 2.4 0.1 64.4 0.0 -4,-6 1.0 7 8.0 PRINCIPAL:2 ENSMUSG00000036733 Rbm42 ENSMUST00000140550 - NO_TRANSLATION retained_intron ENSMUSG00000070810 Sult2a6 ENSMUST00000076576 ENSMUSP00000075884 TRANSLATION protein_coding - CCDS39773.1 1 285.0 19.0 6.0 5.7 265.6 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000070810 Sult2a6 ENSMUST00000184731 ENSMUSP00000138842 TRANSLATION protein_coding - - 1 130.0 7.0 2.0 0.0 65.7 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000039391 Ccdc81 ENSMUST00000041195 ENSMUSP00000044087 TRANSLATION protein_coding - CCDS52306.1 1 654.0 0.0 0.0 11.4 153.1 0.0 -4,-6 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000039391 Ccdc81 ENSMUST00000131966 ENSMUSP00000117788 TRANSLATION nonsense_mediated_decay - - 1 194.0 0.0 0.0 0.0 153.1 0.0 -4,-6 0.0257 - -2.0 MINOR ENSMUSG00000030747 Dgat2 ENSMUST00000207893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030747 Dgat2 ENSMUST00000207611 ENSMUSP00000146391 TRANSLATION protein_coding stop - 3 110.0 0.0 2.55 0.0 60.5 2.0 -4,-6 0.0016 - -2.0 MINOR ENSMUSG00000030747 Dgat2 ENSMUST00000033001 ENSMUSP00000033001 TRANSLATION protein_coding - CCDS21477.1 1 388.0 0.0 6.55 5.4 492.0 2.0 -4,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000030747 Dgat2 ENSMUST00000207894 - NO_TRANSLATION retained_intron ENSMUSG00000030747 Dgat2 ENSMUST00000207491 ENSMUSP00000146342 TRANSLATION nonsense_mediated_decay - - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000030747 Dgat2 ENSMUST00000208591 ENSMUSP00000147074 TRANSLATION nonsense_mediated_decay - - 5 133.0 0.0 0.8 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000094879 Vmn1r129 ENSMUST00000165961 ENSMUSP00000128469 TRANSLATION protein_coding - CCDS52097.1 - 307.0 0.0 0.0 0.4 56.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000100916 Lhb ENSMUST00000072453 ENSMUSP00000072276 TRANSLATION protein_coding - CCDS21242.1 2 141.0 0.0 2.0 3.6 109.5 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000096861 Vmn2r68 ENSMUST00000232921 - NO_TRANSLATION retained_intron ENSMUSG00000096861 Vmn2r68 ENSMUST00000061074 ENSMUSP00000129411 TRANSLATION protein_coding - CCDS52290.1 5 851.0 4.0 1.89 0.0 340.8 0.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000096861 Vmn2r68 ENSMUST00000233062 - NO_TRANSLATION retained_intron ENSMUSG00000039608 Or6aa1 ENSMUST00000053958 ENSMUSP00000062459 TRANSLATION protein_coding - CCDS21429.1 - 319.0 0.0 1.0 6.5 177.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000039608 Or6aa1 ENSMUST00000215733 ENSMUSP00000148852 TRANSLATION protein_coding - CCDS21429.1 5 319.0 0.0 1.0 6.5 177.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000039608 Or6aa1 ENSMUST00000215234 ENSMUSP00000148990 TRANSLATION nonsense_mediated_decay - CCDS21429.1 5 319.0 0.0 1.0 6.5 177.5 6.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000039608 Or6aa1 ENSMUST00000215532 ENSMUSP00000150700 TRANSLATION protein_coding - CCDS21429.1 5 319.0 0.0 1.0 6.5 177.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000039608 Or6aa1 ENSMUST00000216409 ENSMUSP00000149419 TRANSLATION protein_coding - CCDS21429.1 5 319.0 0.0 1.0 6.5 177.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000062773 Tex101 ENSMUST00000206390 ENSMUSP00000146082 TRANSLATION protein_coding stop - 1 194.0 0.0 3.1 0.0 32.4 0.0 2,-3 0.0031 4 -2.0 MINOR ENSMUSG00000062773 Tex101 ENSMUST00000078001 ENSMUSP00000077150 TRANSLATION protein_coding - CCDS20959.1 1 250.0 0.0 3.95 0.4 47.3 0.0 2,-3 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000062773 Tex101 ENSMUST00000205488 ENSMUSP00000146186 TRANSLATION protein_coding stop - 1 194.0 0.0 3.1 0.0 32.4 0.0 2,-3 0.0031 4 -2.0 MINOR ENSMUSG00000038244 Mical2 ENSMUST00000037991 ENSMUSP00000047639 TRANSLATION protein_coding - CCDS57581.1 1 1102.0 39.0 11.94 0.0 135.7 0.0 -4,-5 0.2146 18 14.0 ALTERNATIVE:2 ENSMUSG00000038244 Mical2 ENSMUST00000140202 - NO_TRANSLATION retained_intron ENSMUSG00000038244 Mical2 ENSMUST00000051308 ENSMUSP00000062443 TRANSLATION protein_coding - CCDS52364.1 1 680.0 0.0 4.5 0.0 139.6 0.0 -4,-7 0.1114 2 1.0 MINOR ENSMUSG00000038244 Mical2 ENSMUST00000106647 - NO_TRANSLATION retained_intron ENSMUSG00000038244 Mical2 ENSMUST00000106645 ENSMUSP00000102256 TRANSLATION protein_coding - CCDS52364.1 5 680.0 0.0 4.5 0.0 139.6 0.0 -4,-7 0.1114 2 1.0 MINOR ENSMUSG00000038244 Mical2 ENSMUST00000033033 ENSMUSP00000033033 TRANSLATION protein_coding - - 1 612.0 0.0 0.75 0.0 0.0 0.0 -4,-2 0.0012 2 0.0 MINOR ENSMUSG00000038244 Mical2 ENSMUST00000216652 ENSMUSP00000149026 TRANSLATION protein_coding start - 5 893.0 1.0 4.8 0.0 139.6 0.0 -4,-2 0.0423 2 -2.0 MINOR ENSMUSG00000038244 Mical2 ENSMUST00000144509 ENSMUSP00000123341 TRANSLATION protein_coding start - 3 137.0 7.0 0.94 0.0 36.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000038244 Mical2 ENSMUST00000106648 - NO_TRANSLATION retained_intron ENSMUSG00000038244 Mical2 ENSMUST00000050149 ENSMUSP00000051163 TRANSLATION protein_coding - CCDS21753.1 1 960.0 39.0 11.94 3.6 135.7 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:2 ENSMUSG00000038244 Mical2 ENSMUST00000150428 - NO_TRANSLATION retained_intron ENSMUSG00000038244 Mical2 ENSMUST00000215412 ENSMUSP00000151170 TRANSLATION nonsense_mediated_decay start - 5 77.0 1.0 0.3 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000038244 Mical2 ENSMUST00000213108 ENSMUSP00000150200 TRANSLATION protein_coding start - 1 572.0 0.0 4.5 0.0 141.1 0.0 -4,-5 0.0121 2 -2.0 MINOR ENSMUSG00000033790 Tubgcp5 ENSMUST00000206789 - NO_TRANSLATION retained_intron ENSMUSG00000033790 Tubgcp5 ENSMUST00000206191 ENSMUSP00000146033 TRANSLATION nonsense_mediated_decay - - 1 197.0 0.0 1.7 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000033790 Tubgcp5 ENSMUST00000032627 ENSMUSP00000032627 TRANSLATION protein_coding - CCDS21314.1 1 1024.0 0.0 7.9025 10.1 421.2 0.0 -4,-6 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000033790 Tubgcp5 ENSMUST00000206660 - NO_TRANSLATION retained_intron ENSMUSG00000033790 Tubgcp5 ENSMUST00000205718 - NO_TRANSLATION retained_intron ENSMUSG00000033790 Tubgcp5 ENSMUST00000205311 - NO_TRANSLATION retained_intron ENSMUSG00000033790 Tubgcp5 ENSMUST00000205796 ENSMUSP00000146111 TRANSLATION protein_coding - - 1 961.0 0.0 6.6525 0.0 391.5 0.0 -4,-6 0.0166 11 7.716 MINOR ENSMUSG00000033790 Tubgcp5 ENSMUST00000206133 ENSMUSP00000145677 TRANSLATION nonsense_mediated_decay start - 3 49.0 0.0 0.0825 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033790 Tubgcp5 ENSMUST00000205779 - NO_TRANSLATION retained_intron ENSMUSG00000033790 Tubgcp5 ENSMUST00000206454 ENSMUSP00000146178 TRANSLATION protein_coding start/stop - 3 102.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000070828 Zscan4f ENSMUST00000141491 ENSMUSP00000122083 TRANSLATION protein_coding stop - 2 77.0 0.0 0.0 0.0 24.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070828 Zscan4f ENSMUST00000145237 ENSMUSP00000120149 TRANSLATION protein_coding - CCDS52015.1 1 506.0 15.0 0.2 0.0 112.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000091955 Tmsb10b ENSMUST00000170837 ENSMUSP00000137210 TRANSLATION protein_coding - - - 44.0 0.0 1.0 33.9 82.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000003099 Ppp5c ENSMUST00000124573 - NO_TRANSLATION retained_intron ENSMUSG00000003099 Ppp5c ENSMUST00000003183 ENSMUSP00000003183 TRANSLATION protein_coding - CCDS20859.1 1 499.0 10.0 11.75 0.0 266.5 0.0 -4,-5 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000003099 Ppp5c ENSMUST00000154880 - NO_TRANSLATION retained_intron ENSMUSG00000003099 Ppp5c ENSMUST00000127311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003099 Ppp5c ENSMUST00000142831 - NO_TRANSLATION retained_intron ENSMUSG00000003099 Ppp5c ENSMUST00000153242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003099 Ppp5c ENSMUST00000142597 ENSMUSP00000122783 TRANSLATION protein_coding start - 5 476.0 10.0 11.0 2.0 244.4 0.0 -4,-5 0.5262 20 -2.0 MINOR ENSMUSG00000003099 Ppp5c ENSMUST00000145997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003099 Ppp5c ENSMUST00000146920 - NO_TRANSLATION retained_intron ENSMUSG00000003099 Ppp5c ENSMUST00000156366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003099 Ppp5c ENSMUST00000138353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004542 Psg19 ENSMUST00000182681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004542 Psg19 ENSMUST00000182916 - NO_TRANSLATION retained_intron ENSMUSG00000004542 Psg19 ENSMUST00000004657 ENSMUSP00000004657 TRANSLATION protein_coding - CCDS20877.1 1 475.0 0.0 3.2 0.4 165.1 0.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000004542 Psg19 ENSMUST00000182853 ENSMUSP00000138621 TRANSLATION protein_coding - - 1 355.0 0.0 2.4 0.1 123.3 0.0 -1,-5 0.0018 - 7.89 MINOR ENSMUSG00000030945 Acsm2 ENSMUST00000167935 ENSMUSP00000126670 TRANSLATION protein_coding - CCDS21782.1 1 575.0 28.0 13.17 6.7 312.5 1.0 -4,-7 1.0 23 20.0 PRINCIPAL:1 ENSMUSG00000030945 Acsm2 ENSMUST00000129766 ENSMUSP00000118174 TRANSLATION protein_coding start - 5 216.0 25.0 6.32 0.0 129.6 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000030945 Acsm2 ENSMUST00000129658 - NO_TRANSLATION retained_intron ENSMUSG00000030945 Acsm2 ENSMUST00000123638 ENSMUSP00000118276 TRANSLATION protein_coding start - 3 163.0 17.0 4.54 0.0 101.6 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000030945 Acsm2 ENSMUST00000208019 ENSMUSP00000146746 TRANSLATION nonsense_mediated_decay start - 5 83.0 2.0 2.74 0.0 47.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030945 Acsm2 ENSMUST00000084647 ENSMUSP00000081697 TRANSLATION protein_coding - CCDS52380.1 1 580.0 25.0 13.17 6.7 312.5 1.0 -4,-7 0.9376 22 18.002 MINOR ENSMUSG00000030945 Acsm2 ENSMUST00000098084 ENSMUSP00000095690 TRANSLATION protein_coding - CCDS52379.1 1 600.0 28.0 13.17 0.0 312.5 1.0 -4,-7 0.1251 23 18.0 MINOR ENSMUSG00000030945 Acsm2 ENSMUST00000207977 ENSMUSP00000146400 TRANSLATION protein_coding start - 3 86.0 10.0 2.5 0.0 42.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030945 Acsm2 ENSMUST00000130583 ENSMUSP00000115048 TRANSLATION protein_coding stop - 3 149.0 1.0 2.1 0.0 47.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000030945 Acsm2 ENSMUST00000209069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063179 Pstk ENSMUST00000141914 ENSMUSP00000146739 TRANSLATION nonsense_mediated_decay - - 2 74.0 7.0 0.08 0.0 22.6 0.0 -2,0 0.0 1 -2.0 MINOR ENSMUSG00000063179 Pstk ENSMUST00000075610 ENSMUSP00000075037 TRANSLATION protein_coding - CCDS21914.1 1 359.0 9.0 1.87 6.3 79.6 0.0 -2,0 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000063179 Pstk ENSMUST00000133284 ENSMUSP00000146724 TRANSLATION protein_coding start - 5 51.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063179 Pstk ENSMUST00000207489 ENSMUSP00000146708 TRANSLATION protein_coding start - 2 105.0 1.0 1.19 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000063179 Pstk ENSMUST00000124672 - NO_TRANSLATION retained_intron ENSMUSG00000063179 Pstk ENSMUST00000148533 - NO_TRANSLATION retained_intron ENSMUSG00000063179 Pstk ENSMUST00000128092 ENSMUSP00000146722 TRANSLATION protein_coding start - 3 136.0 2.0 1.34 0.0 47.6 0.0 -4,-6 0.0009 1 -2.0 MINOR ENSMUSG00000063179 Pstk ENSMUST00000208084 - NO_TRANSLATION retained_intron ENSMUSG00000063179 Pstk ENSMUST00000145114 ENSMUSP00000118636 TRANSLATION nonsense_mediated_decay - - 1 267.0 9.0 0.42 0.0 67.5 0.0 -2,0 0.0021 2 -2.0 MINOR ENSMUSG00000063179 Pstk ENSMUST00000207933 - NO_TRANSLATION retained_intron ENSMUSG00000063179 Pstk ENSMUST00000207419 - NO_TRANSLATION retained_intron ENSMUSG00000095543 Vmn1r148 ENSMUST00000177774 ENSMUSP00000136142 TRANSLATION protein_coding - CCDS20925.1 - 307.0 0.0 0.0 0.4 53.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000035191 Rfpl4 ENSMUST00000208468 ENSMUSP00000146891 TRANSLATION protein_coding - - 2 281.0 8.0 1.8 3.7 195.0 0.0 -4,-5 0.3115 - 17.608 MINOR ENSMUSG00000035191 Rfpl4 ENSMUST00000045215 ENSMUSP00000039519 TRANSLATION protein_coding - CCDS20759.1 1 287.0 8.0 2.13 3.7 202.7 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000035191 Rfpl4 ENSMUST00000179971 ENSMUSP00000136497 TRANSLATION protein_coding - CCDS20759.1 1 287.0 8.0 2.13 3.7 202.7 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000030697 Ppp4c ENSMUST00000205879 - NO_TRANSLATION retained_intron ENSMUSG00000030697 Ppp4c ENSMUST00000206477 ENSMUSP00000146013 TRANSLATION protein_coding start - 3 104.0 2.0 2.0 0.0 35.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030697 Ppp4c ENSMUST00000206570 ENSMUSP00000146245 TRANSLATION protein_coding - CCDS21844.1 1 307.0 10.0 7.32 23.9 137.5 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000030697 Ppp4c ENSMUST00000206334 ENSMUSP00000146180 TRANSLATION nonsense_mediated_decay start - 3 53.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030697 Ppp4c ENSMUST00000206353 ENSMUSP00000146088 TRANSLATION protein_coding start/stop - 5 100.0 6.0 2.99 0.0 37.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030697 Ppp4c ENSMUST00000205862 - NO_TRANSLATION retained_intron ENSMUSG00000030697 Ppp4c ENSMUST00000032936 ENSMUSP00000032936 TRANSLATION protein_coding - CCDS21844.1 1 307.0 10.0 7.32 23.9 137.5 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000030697 Ppp4c ENSMUST00000206261 - NO_TRANSLATION retained_intron ENSMUSG00000030697 Ppp4c ENSMUST00000205950 - NO_TRANSLATION retained_intron ENSMUSG00000030697 Ppp4c ENSMUST00000205935 ENSMUSP00000146240 TRANSLATION nonsense_mediated_decay - - 5 50.0 0.0 1.165 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030697 Ppp4c ENSMUST00000205786 ENSMUSP00000146202 TRANSLATION protein_coding start - 3 157.0 3.0 3.33 0.0 41.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000046410 Kcnk6 ENSMUST00000085818 ENSMUSP00000082975 TRANSLATION protein_coding - CCDS21068.1 1 313.0 0.0 1.48 9.7 126.5 0.0 -1,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000046410 Kcnk6 ENSMUST00000208807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030935 Acsm3 ENSMUST00000106529 ENSMUSP00000102139 TRANSLATION protein_coding - - 1 622.0 19.0 11.5 0.0 346.5 0.0 -4,0 0.0541 19 18.0 MINOR ENSMUSG00000030935 Acsm3 ENSMUST00000154828 - NO_TRANSLATION retained_intron ENSMUSG00000030935 Acsm3 ENSMUST00000149598 - NO_TRANSLATION retained_intron ENSMUSG00000030935 Acsm3 ENSMUST00000063770 ENSMUSP00000068803 TRANSLATION protein_coding - CCDS21786.1 1 580.0 19.0 11.1 11.0 346.5 0.0 -4,0 1.0 19 20.202 PRINCIPAL:1 ENSMUSG00000030935 Acsm3 ENSMUST00000149766 - NO_TRANSLATION retained_intron ENSMUSG00000030935 Acsm3 ENSMUST00000106528 ENSMUSP00000102138 TRANSLATION protein_coding - CCDS21786.1 1 580.0 19.0 11.1 11.0 346.5 0.0 -4,0 1.0 19 20.202 PRINCIPAL:1 ENSMUSG00000030935 Acsm3 ENSMUST00000106527 ENSMUSP00000102137 TRANSLATION protein_coding - CCDS21786.1 1 580.0 19.0 11.1 11.0 346.5 0.0 -4,0 1.0 19 20.202 PRINCIPAL:1 ENSMUSG00000030935 Acsm3 ENSMUST00000106526 ENSMUSP00000102136 TRANSLATION protein_coding - CCDS21786.1 5 580.0 19.0 11.1 11.0 346.5 0.0 -4,0 1.0 19 20.202 PRINCIPAL:1 ENSMUSG00000078787 Cyp2t4 ENSMUST00000108385 ENSMUSP00000104022 TRANSLATION protein_coding - - 5 495.0 49.0 9.0 0.1 428.6 0.0 3,-2 0.8596 1 14.0 PRINCIPAL:2 ENSMUSG00000078787 Cyp2t4 ENSMUST00000164093 ENSMUSP00000126779 TRANSLATION protein_coding - CCDS52157.1 5 503.0 49.0 9.0 0.0 428.6 0.0 -1,-5 0.4128 1 14.0 ALTERNATIVE:2 ENSMUSG00000089847 Timm10b ENSMUST00000140385 - NO_TRANSLATION retained_intron ENSMUSG00000089847 Timm10b ENSMUST00000209588 ENSMUSP00000147720 TRANSLATION protein_coding - - 3 68.0 0.0 1.83 0.0 0.0 0.0 -4,-7 0.0 3 3.672 MINOR ENSMUSG00000089847 Timm10b ENSMUST00000209445 ENSMUSP00000147316 TRANSLATION protein_coding start - 3 48.0 0.0 0.0 0.0 0.0 0.0 -3,0 0.0004 - -2.0 MINOR ENSMUSG00000089847 Timm10b ENSMUST00000106780 ENSMUSP00000102392 TRANSLATION protein_coding - CCDS21657.1 2 100.0 0.0 2.99 4.3 55.9 0.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000089847 Timm10b ENSMUST00000150479 ENSMUSP00000121793 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.33 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000089847 Timm10b ENSMUST00000058333 ENSMUSP00000057061 TRANSLATION protein_coding - CCDS21657.1 1 100.0 0.0 2.99 4.3 55.9 0.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000089847 Timm10b ENSMUST00000106784 ENSMUSP00000102396 TRANSLATION protein_coding - - 3 102.0 0.0 0.83 0.0 0.0 0.0 -4,-2 0.0169 - 1.668 MINOR ENSMUSG00000089847 Timm10b ENSMUST00000210350 ENSMUSP00000148071 TRANSLATION protein_coding - - 2 99.0 0.0 2.99 0.0 55.9 0.0 -4,-7 0.0903 4 12.0 MINOR ENSMUSG00000089847 Timm10b ENSMUST00000140577 ENSMUSP00000147612 TRANSLATION nonsense_mediated_decay - - 3 51.0 0.0 1.49 0.0 33.2 0.0 -4,-7 0.0008 - -2.0 MINOR ENSMUSG00000089847 Timm10b ENSMUST00000151193 ENSMUSP00000147436 TRANSLATION protein_coding - - 2 51.0 0.0 1.49 0.0 33.2 0.0 -4,-7 0.0008 2 6.552 MINOR ENSMUSG00000089847 Timm10b ENSMUST00000106783 ENSMUSP00000102395 TRANSLATION protein_coding - CCDS21657.1 1 100.0 0.0 2.99 4.3 55.9 0.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000025754 Agbl1 ENSMUST00000107442 ENSMUSP00000103066 TRANSLATION protein_coding - - 2 766.0 5.0 5.054 0.0 44.9 0.0 -4,-7 0.0605 4 10.736 ALTERNATIVE:2 ENSMUSG00000025754 Agbl1 ENSMUST00000026854 ENSMUSP00000026854 TRANSLATION protein_coding - - 2 651.0 4.0 4.014 0.0 44.6 0.0 -4,-7 0.0284 4 7.654 MINOR ENSMUSG00000025754 Agbl1 ENSMUST00000156166 ENSMUSP00000119721 TRANSLATION protein_coding - CCDS85321.1 1 1122.0 5.0 5.186 0.1 44.9 0.0 -4,-5 1.0 7 11.0 PRINCIPAL:2 ENSMUSG00000023185 Ceacam14 ENSMUST00000023953 ENSMUSP00000023953 TRANSLATION protein_coding - CCDS20864.1 1 263.0 0.0 0.8 0.3 0.0 0.0 -1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043308 Vmn1r75 ENSMUST00000228268 ENSMUSP00000154800 TRANSLATION protein_coding - - - 263.0 0.0 0.0 0.0 97.8 6.0 -4,-7 0.0804 - 6.0 MINOR ENSMUSG00000043308 Vmn1r75 ENSMUST00000226855 ENSMUSP00000154144 TRANSLATION protein_coding - CCDS20802.1 - 305.0 0.0 1.0 0.4 97.8 7.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043308 Vmn1r75 ENSMUST00000228646 ENSMUSP00000154156 TRANSLATION protein_coding - - - 263.0 0.0 0.0 0.0 97.8 6.0 -4,-7 0.0804 - 6.0 MINOR ENSMUSG00000043308 Vmn1r75 ENSMUST00000057229 ENSMUSP00000051510 TRANSLATION protein_coding - CCDS20802.1 - 305.0 0.0 1.0 0.4 97.8 7.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043308 Vmn1r75 ENSMUST00000228463 ENSMUSP00000154577 TRANSLATION protein_coding - CCDS20802.1 - 305.0 0.0 1.0 0.4 97.8 7.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043308 Vmn1r75 ENSMUST00000227611 ENSMUSP00000154079 TRANSLATION protein_coding - - - 263.0 0.0 0.0 0.0 97.8 6.0 -4,-7 0.0804 - 6.0 MINOR ENSMUSG00000043308 Vmn1r75 ENSMUST00000226622 ENSMUSP00000154540 TRANSLATION protein_coding - CCDS20802.1 - 305.0 0.0 1.0 0.4 97.8 7.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000070547 Mrgprb1 ENSMUST00000188918 ENSMUSP00000140432 TRANSLATION protein_coding - - 3 122.0 0.0 0.6 0.0 0.0 1.0 -4,-7 0.0004 - 1.386 MINOR ENSMUSG00000070547 Mrgprb1 ENSMUST00000188095 ENSMUSP00000140434 TRANSLATION protein_coding - - 3 57.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - 2.31 MINOR ENSMUSG00000070547 Mrgprb1 ENSMUST00000094384 ENSMUSP00000091946 TRANSLATION protein_coding - CCDS52257.1 1 350.0 0.0 2.6 0.1 35.9 7.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000051910 Sox6 ENSMUST00000205405 ENSMUSP00000145732 TRANSLATION protein_coding - - 5 828.0 0.0 1.8 6.2 78.0 0.0 -4,-5 0.8487 6 10.0 ALTERNATIVE:1 ENSMUSG00000051910 Sox6 ENSMUST00000206427 - NO_TRANSLATION retained_intron ENSMUSG00000051910 Sox6 ENSMUST00000206775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051910 Sox6 ENSMUST00000206369 ENSMUSP00000145931 TRANSLATION protein_coding - - 5 828.0 0.0 1.8 6.2 78.0 0.0 -4,-5 0.8487 6 10.0 ALTERNATIVE:1 ENSMUSG00000051910 Sox6 ENSMUST00000106612 ENSMUSP00000102223 TRANSLATION protein_coding - CCDS40097.1 1 785.0 0.0 1.8 3.3 78.0 0.0 -4,-5 0.7622 6 8.884 MINOR ENSMUSG00000051910 Sox6 ENSMUST00000166877 ENSMUSP00000129512 TRANSLATION protein_coding - CCDS52369.1 5 787.0 0.0 1.8 3.3 78.0 0.0 -4,-5 0.762 6 8.884 MINOR ENSMUSG00000051910 Sox6 ENSMUST00000072804 ENSMUSP00000072583 TRANSLATION protein_coding - CCDS40098.1 1 827.0 0.0 1.8 6.2 78.0 0.0 -4,-5 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000051910 Sox6 ENSMUST00000205818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051910 Sox6 ENSMUST00000206912 - NO_TRANSLATION retained_intron ENSMUSG00000051910 Sox6 ENSMUST00000206573 - NO_TRANSLATION retained_intron ENSMUSG00000051910 Sox6 ENSMUST00000206034 ENSMUSP00000145919 TRANSLATION protein_coding - - 5 786.0 0.0 1.8 0.0 78.0 0.0 -4,-5 0.0724 6 8.0 MINOR ENSMUSG00000051910 Sox6 ENSMUST00000205980 - NO_TRANSLATION retained_intron ENSMUSG00000051910 Sox6 ENSMUST00000205479 ENSMUSP00000145561 TRANSLATION protein_coding start/stop - 3 111.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051910 Sox6 ENSMUST00000206123 ENSMUSP00000145576 TRANSLATION protein_coding stop - 2 125.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051910 Sox6 ENSMUST00000169129 ENSMUSP00000126404 TRANSLATION protein_coding - CCDS52369.1 1 787.0 0.0 1.8 3.3 78.0 0.0 -4,-5 0.762 6 8.884 MINOR ENSMUSG00000051910 Sox6 ENSMUST00000166207 ENSMUSP00000129027 TRANSLATION protein_coding - CCDS40098.1 1 827.0 0.0 1.8 6.2 78.0 0.0 -4,-5 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000051618 Ubqln3 ENSMUST00000057254 ENSMUSP00000055229 TRANSLATION protein_coding - CCDS21610.1 1 658.0 0.0 0.0 6.3 64.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000109511 Nup62 ENSMUST00000207085 ENSMUSP00000147215 TRANSLATION protein_coding stop - 2 42.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000109511 Nup62 ENSMUST00000208626 ENSMUSP00000146695 TRANSLATION protein_coding - CCDS21216.1 5 526.0 0.0 0.8 1.2 130.5 0.0 -4,-7 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000109511 Nup62 ENSMUST00000057195 ENSMUSP00000056785 TRANSLATION protein_coding - CCDS21216.1 1 526.0 0.0 0.8 1.2 130.5 0.0 -4,-7 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000109511 Nup62 ENSMUST00000208172 ENSMUSP00000147109 TRANSLATION protein_coding stop - 2 159.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000109511 Nup62 ENSMUST00000207103 ENSMUSP00000147181 TRANSLATION protein_coding - CCDS21216.1 1 526.0 0.0 0.8 1.2 130.5 0.0 -4,-7 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000025470 Zfp511 ENSMUST00000210882 ENSMUSP00000147401 TRANSLATION protein_coding start - 2 218.0 10.0 0.0 0.0 0.0 0.0 -4,-2 0.0442 3 -2.0 MINOR ENSMUSG00000025470 Zfp511 ENSMUST00000210089 - NO_TRANSLATION retained_intron ENSMUSG00000025470 Zfp511 ENSMUST00000211789 ENSMUSP00000147966 TRANSLATION nonsense_mediated_decay - - 1 98.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0095 2 -2.0 MINOR ENSMUSG00000025470 Zfp511 ENSMUST00000210936 - NO_TRANSLATION retained_intron ENSMUSG00000025470 Zfp511 ENSMUST00000168194 ENSMUSP00000129154 TRANSLATION protein_coding - CCDS52431.1 2 250.0 10.0 0.0 5.4 0.0 0.0 -4,-6 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000025470 Zfp511 ENSMUST00000210419 - NO_TRANSLATION retained_intron ENSMUSG00000078630 Tomt ENSMUST00000106970 ENSMUSP00000102583 TRANSLATION protein_coding - CCDS40044.1 1 258.0 0.0 3.0 30.0 0.0 0.0 1,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000078630 Tomt ENSMUST00000106969 ENSMUSP00000102582 TRANSLATION protein_coding - CCDS40044.1 1 258.0 0.0 3.0 30.0 0.0 0.0 1,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000002781 Tmem143 ENSMUST00000209580 - NO_TRANSLATION retained_intron ENSMUSG00000002781 Tmem143 ENSMUST00000211280 - NO_TRANSLATION retained_intron ENSMUSG00000002781 Tmem143 ENSMUST00000209395 - NO_TRANSLATION retained_intron ENSMUSG00000002781 Tmem143 ENSMUST00000209350 ENSMUSP00000148217 TRANSLATION protein_coding - - 1 453.0 0.0 0.0 0.0 34.3 3.0 -2,1 0.7342 4 0.0 PRINCIPAL:4 ENSMUSG00000002781 Tmem143 ENSMUST00000069772 ENSMUSP00000070405 TRANSLATION protein_coding - CCDS21269.1 1 458.0 0.0 0.0 0.0 34.3 3.0 -2,1 0.5725 4 0.0 ALTERNATIVE:2 ENSMUSG00000002781 Tmem143 ENSMUST00000210503 ENSMUSP00000147779 TRANSLATION protein_coding stop - 5 259.0 0.0 0.0 0.0 24.7 0.0 -2,1 0.0037 2 -2.0 MINOR ENSMUSG00000002781 Tmem143 ENSMUST00000210574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002781 Tmem143 ENSMUST00000209292 ENSMUSP00000147352 TRANSLATION nonsense_mediated_decay start - 2 255.0 0.0 0.0 0.0 0.0 0.0 -2,1 0.0034 3 -2.0 MINOR ENSMUSG00000002781 Tmem143 ENSMUST00000210044 - NO_TRANSLATION retained_intron ENSMUSG00000002781 Tmem143 ENSMUST00000210692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089832 Shkbp1 ENSMUST00000148933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089832 Shkbp1 ENSMUST00000152053 - NO_TRANSLATION retained_intron ENSMUSG00000089832 Shkbp1 ENSMUST00000136589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089832 Shkbp1 ENSMUST00000143239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089832 Shkbp1 ENSMUST00000140638 - NO_TRANSLATION retained_intron ENSMUSG00000089832 Shkbp1 ENSMUST00000132046 - NO_TRANSLATION retained_intron ENSMUSG00000089832 Shkbp1 ENSMUST00000003857 ENSMUSP00000003857 TRANSLATION protein_coding - CCDS21018.1 1 704.0 0.0 3.6 7.8 78.8 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000089832 Shkbp1 ENSMUST00000132684 - NO_TRANSLATION retained_intron ENSMUSG00000089832 Shkbp1 ENSMUST00000123190 - NO_TRANSLATION retained_intron ENSMUSG00000089832 Shkbp1 ENSMUST00000157078 - NO_TRANSLATION retained_intron ENSMUSG00000089832 Shkbp1 ENSMUST00000138449 - NO_TRANSLATION retained_intron ENSMUSG00000043671 Dpy19l3 ENSMUST00000144416 ENSMUSP00000122489 TRANSLATION nonsense_mediated_decay start - 5 114.0 0.0 0.65 0.0 165.0 4.0 -4,-6 0.0022 1 -2.0 MINOR ENSMUSG00000043671 Dpy19l3 ENSMUST00000127782 - NO_TRANSLATION retained_intron ENSMUSG00000043671 Dpy19l3 ENSMUST00000143590 ENSMUSP00000123340 TRANSLATION nonsense_mediated_decay start - 3 31.0 0.0 0.066 0.0 0.0 2.0 -2,-7 0.0002 - -2.0 MINOR ENSMUSG00000043671 Dpy19l3 ENSMUST00000124116 - NO_TRANSLATION retained_intron ENSMUSG00000043671 Dpy19l3 ENSMUST00000206004 - NO_TRANSLATION retained_intron ENSMUSG00000043671 Dpy19l3 ENSMUST00000150862 - NO_TRANSLATION retained_intron ENSMUSG00000043671 Dpy19l3 ENSMUST00000205751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043671 Dpy19l3 ENSMUST00000155451 - NO_TRANSLATION retained_intron ENSMUSG00000043671 Dpy19l3 ENSMUST00000051377 ENSMUSP00000054747 TRANSLATION protein_coding - CCDS21155.1 1 716.0 0.0 4.937 10.5 800.7 11.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000043671 Dpy19l3 ENSMUST00000155993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000092335 Zfp977 ENSMUST00000249326 ENSMUSP00000159695 TRANSLATION protein_coding - - - 77.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - 2.37 MINOR ENSMUSG00000092335 Zfp977 ENSMUST00000173283 ENSMUSP00000134517 TRANSLATION protein_coding - - 2 438.0 44.0 2.02375 0.0 298.3 0.0 -4,-5 0.7998 - 18.0 PRINCIPAL:1 ENSMUSG00000092335 Zfp977 ENSMUST00000249327 ENSMUSP00000159696 TRANSLATION protein_coding - - - 406.0 44.0 2.02375 0.3 220.2 0.0 -4,-5 0.116 - 13.314 MINOR ENSMUSG00000078621 Hbb-bh2 ENSMUST00000106866 ENSMUSP00000102479 TRANSLATION protein_coding - CCDS52340.1 1 147.0 21.0 3.0 16.5 83.7 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000066100 Krtap5-1 ENSMUST00000188274 ENSMUSP00000139752 TRANSLATION protein_coding - CCDS80834.1 - 230.0 0.0 0.0 0.0 24.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000058402 Zfp420 ENSMUST00000130272 - NO_TRANSLATION retained_intron ENSMUSG00000058402 Zfp420 ENSMUST00000148489 - NO_TRANSLATION retained_intron ENSMUSG00000058402 Zfp420 ENSMUST00000074876 ENSMUSP00000074417 TRANSLATION protein_coding - CCDS52175.1 1 578.0 76.0 1.0 0.4 442.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000058402 Zfp420 ENSMUST00000057652 ENSMUSP00000056077 TRANSLATION protein_coding - CCDS52175.1 1 578.0 76.0 1.0 0.4 442.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000058402 Zfp420 ENSMUST00000145952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051457 Spn ENSMUST00000049931 ENSMUSP00000049534 TRANSLATION protein_coding - CCDS21858.1 1 395.0 0.0 0.0 0.0 0.0 1.0 4,-1 0.9785 5 0.0 PRINCIPAL:1 ENSMUSG00000051457 Spn ENSMUST00000143713 ENSMUSP00000122787 TRANSLATION nonsense_mediated_decay - CCDS21858.1 1 395.0 0.0 0.0 0.0 0.0 1.0 4,-1 0.9785 5 -2.0 MINOR ENSMUSG00000051457 Spn ENSMUST00000205483 ENSMUSP00000145637 TRANSLATION protein_coding start - 2 140.0 0.0 0.0 0.0 0.0 0.0 2,-4 0.0534 5 -2.0 MINOR ENSMUSG00000061626 Or52a5 ENSMUST00000216811 ENSMUSP00000150493 TRANSLATION protein_coding - CCDS21591.1 5 315.0 0.0 1.0 11.0 335.0 5.0 -3,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061626 Or52a5 ENSMUST00000072513 ENSMUSP00000072329 TRANSLATION protein_coding - CCDS21591.1 - 315.0 0.0 1.0 11.0 335.0 5.0 -3,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094520 Or51q1 ENSMUST00000098185 ENSMUSP00000095788 TRANSLATION protein_coding - CCDS21600.1 - 321.0 0.0 1.0 2.6 397.4 7.0 -4,-7 0.6133 - 12.456 MINOR ENSMUSG00000094520 Or51q1 ENSMUST00000209473 ENSMUSP00000148103 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 11.5 397.4 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000227461 ENSMUSP00000154568 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000228467 ENSMUSP00000154357 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000171039 ENSMUSP00000128295 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000228367 ENSMUSP00000154816 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000228676 ENSMUSP00000154688 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000228633 ENSMUSP00000153777 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000228133 ENSMUSP00000154251 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000226694 ENSMUSP00000154516 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000228004 ENSMUSP00000154013 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000227695 ENSMUSP00000154057 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000227264 ENSMUSP00000154202 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000227411 ENSMUSP00000154307 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091924 Vmn1r185 ENSMUST00000227479 ENSMUSP00000154388 TRANSLATION protein_coding - CCDS21005.1 - 319.0 0.0 0.0 0.3 104.5 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046223 Plaur ENSMUST00000205877 - NO_TRANSLATION retained_intron ENSMUSG00000046223 Plaur ENSMUST00000206514 ENSMUSP00000145632 TRANSLATION nonsense_mediated_decay - - 1 222.0 0.0 3.0 0.0 57.4 0.0 3,-2 0.0006 - -2.0 MINOR ENSMUSG00000046223 Plaur ENSMUST00000002284 ENSMUSP00000002284 TRANSLATION protein_coding - CCDS20950.1 1 327.0 0.0 5.8 0.0 119.8 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000046223 Plaur ENSMUST00000206693 - NO_TRANSLATION retained_intron ENSMUSG00000046223 Plaur ENSMUST00000206935 ENSMUSP00000145540 TRANSLATION nonsense_mediated_decay - - 3 74.0 0.0 1.1 0.0 25.8 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000046223 Plaur ENSMUST00000206636 - NO_TRANSLATION retained_intron ENSMUSG00000038539 Atf5 ENSMUST00000107893 ENSMUSP00000103525 TRANSLATION protein_coding - CCDS21215.1 1 283.0 0.0 0.6 4.7 47.0 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038539 Atf5 ENSMUST00000209072 ENSMUSP00000146755 TRANSLATION protein_coding - - 5 75.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000038539 Atf5 ENSMUST00000047356 ENSMUSP00000047771 TRANSLATION protein_coding - CCDS21215.1 1 283.0 0.0 0.6 4.7 47.0 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000041836 Ptpre ENSMUST00000209979 ENSMUSP00000147613 TRANSLATION protein_coding - CCDS85446.1 1 642.0 22.0 14.55 19.1 550.0 0.0 -4,-1 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000041836 Ptpre ENSMUST00000211788 ENSMUSP00000147524 TRANSLATION protein_coding - CCDS85445.1 1 712.0 22.0 14.55 2.1 550.0 2.0 0,-2 0.4101 12 18.244 MINOR ENSMUSG00000041836 Ptpre ENSMUST00000209256 ENSMUSP00000147656 TRANSLATION protein_coding - CCDS85444.1 1 719.0 22.0 14.55 2.1 550.0 2.0 -1,-4 0.3501 12 18.244 MINOR ENSMUSG00000041836 Ptpre ENSMUST00000211092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041836 Ptpre ENSMUST00000211140 ENSMUSP00000147957 TRANSLATION protein_coding - CCDS21944.1 1 699.0 22.0 14.55 8.3 550.0 2.0 -2,-5 0.5686 12 19.612 MINOR ENSMUSG00000041836 Ptpre ENSMUST00000209268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041836 Ptpre ENSMUST00000210833 ENSMUSP00000147313 TRANSLATION protein_coding - CCDS21944.1 1 699.0 22.0 14.55 8.3 550.0 2.0 -2,-5 0.5686 12 19.612 MINOR ENSMUSG00000041836 Ptpre ENSMUST00000073961 ENSMUSP00000073616 TRANSLATION protein_coding - CCDS21944.1 1 699.0 22.0 14.55 8.3 550.0 2.0 -2,-5 0.5686 12 19.612 MINOR ENSMUSG00000052040 Klf13 ENSMUST00000063694 ENSMUSP00000067680 TRANSLATION protein_coding - CCDS21331.1 1 289.0 12.0 1.73 3.1 64.5 0.0 -4,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000052040 Klf13 ENSMUST00000185175 ENSMUSP00000140381 TRANSLATION protein_coding - - 2 52.0 2.0 0.73 0.0 0.0 0.0 -4,-1 0.0 1 2.532 MINOR ENSMUSG00000052040 Klf13 ENSMUST00000183907 - NO_TRANSLATION retained_intron ENSMUSG00000052040 Klf13 ENSMUST00000183817 ENSMUSP00000139049 TRANSLATION protein_coding - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - 0.0 MINOR ENSMUSG00000078793 Ceacam23 ENSMUST00000072381 ENSMUSP00000156991 TRANSLATION protein_coding - - - 1067.0 0.0 3.73 0.0 230.5 0.0 0,-3 0.9994 - 12.0 PRINCIPAL:1 ENSMUSG00000049130 C5ar1 ENSMUST00000209442 ENSMUSP00000148140 TRANSLATION protein_coding stop - 3 181.0 0.0 1.0 0.0 82.7 5.0 -4,-6 0.0043 - -2.0 MINOR ENSMUSG00000049130 C5ar1 ENSMUST00000168818 ENSMUSP00000129972 TRANSLATION protein_coding - CCDS20846.1 1 351.0 0.0 2.0 2.1 139.6 8.0 -4,-6 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000049130 C5ar1 ENSMUST00000050770 ENSMUSP00000060003 TRANSLATION protein_coding - CCDS20846.1 3 351.0 0.0 2.0 2.1 139.6 8.0 -4,-6 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000091692 4930433I11Rik ENSMUST00000206529 ENSMUSP00000146117 TRANSLATION protein_coding - - 5 723.0 0.0 0.0 0.1 191.4 0.0 -4,-6 0.0992 - 2.0 ALTERNATIVE:2 ENSMUSG00000091692 4930433I11Rik ENSMUST00000171664 ENSMUSP00000131120 TRANSLATION protein_coding - CCDS52207.1 1 632.0 0.0 0.0 0.0 191.4 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000095163 Vmn1r138 ENSMUST00000179206 ENSMUSP00000137285 TRANSLATION protein_coding - CCDS52105.1 - 306.0 0.0 0.0 0.4 56.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000051900 Abca16 ENSMUST00000153845 - NO_TRANSLATION retained_intron ENSMUSG00000051900 Abca16 ENSMUST00000120490 ENSMUSP00000112736 TRANSLATION protein_coding - - 5 1678.0 16.0 11.72 0.1 338.1 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000051900 Abca16 ENSMUST00000144122 - NO_TRANSLATION retained_intron ENSMUSG00000050100 Hmx2 ENSMUST00000183219 ENSMUSP00000138799 TRANSLATION protein_coding - CCDS21918.1 1 273.0 0.0 0.8 15.7 71.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000050100 Hmx2 ENSMUST00000051997 ENSMUSP00000058205 TRANSLATION protein_coding - CCDS21918.1 1 273.0 0.0 0.8 15.7 71.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000056885 Gm4559 ENSMUST00000080669 ENSMUSP00000079498 TRANSLATION protein_coding - CCDS57596.1 - 199.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8767 - 0.0 PRINCIPAL:1 ENSMUSG00000030824 Nucb1 ENSMUST00000210449 ENSMUSP00000147365 TRANSLATION protein_coding start/stop - 5 271.0 8.0 5.2 0.0 38.6 0.0 -4,-5 0.0055 20 -2.0 MINOR ENSMUSG00000030824 Nucb1 ENSMUST00000210675 - NO_TRANSLATION retained_intron ENSMUSG00000030824 Nucb1 ENSMUST00000210208 - NO_TRANSLATION retained_intron ENSMUSG00000030824 Nucb1 ENSMUST00000033096 ENSMUSP00000033096 TRANSLATION protein_coding - CCDS85300.1 5 455.0 8.0 6.165 3.2 38.6 0.0 4,-1 0.9185 28 15.0 ALTERNATIVE:2 ENSMUSG00000030824 Nucb1 ENSMUST00000211343 ENSMUSP00000147756 TRANSLATION protein_coding stop - 5 170.0 0.0 1.3 0.0 0.0 0.0 3,-1 0.0 9 -2.0 MINOR ENSMUSG00000030824 Nucb1 ENSMUST00000209509 - NO_TRANSLATION retained_intron ENSMUSG00000030824 Nucb1 ENSMUST00000209436 ENSMUSP00000148242 TRANSLATION protein_coding stop - 2 121.0 0.0 1.265 0.0 0.0 0.0 4,-1 0.0008 4 -2.0 MINOR ENSMUSG00000030824 Nucb1 ENSMUST00000211765 ENSMUSP00000147383 TRANSLATION protein_coding - CCDS52247.1 1 459.0 8.0 6.165 3.2 38.6 0.0 4,-1 1.0 29 15.0 PRINCIPAL:3 ENSMUSG00000030824 Nucb1 ENSMUST00000211682 ENSMUSP00000147428 TRANSLATION protein_coding stop - 2 220.0 0.0 2.465 0.0 0.0 0.0 4,-1 0.0008 12 -2.0 MINOR ENSMUSG00000030824 Nucb1 ENSMUST00000210394 - NO_TRANSLATION retained_intron ENSMUSG00000030670 Cyp2r1 ENSMUST00000119712 ENSMUSP00000112818 TRANSLATION protein_coding - - 5 290.0 19.0 5.74 1.1 248.4 2.0 0,-4 0.0137 2 2.998 MINOR ENSMUSG00000030670 Cyp2r1 ENSMUST00000138712 ENSMUSP00000123556 TRANSLATION nonsense_mediated_decay - - 1 83.0 0.0 1.0 0.0 0.0 2.0 0,-4 0.0105 - -2.0 MINOR ENSMUSG00000030670 Cyp2r1 ENSMUST00000211506 ENSMUSP00000147544 TRANSLATION protein_coding - - 5 292.0 24.0 4.08 0.0 281.6 0.0 -4,-6 0.0 2 2.664 MINOR ENSMUSG00000030670 Cyp2r1 ENSMUST00000128587 ENSMUSP00000121924 TRANSLATION nonsense_mediated_decay start - 5 268.0 11.0 3.924 0.0 153.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030670 Cyp2r1 ENSMUST00000032908 ENSMUSP00000032908 TRANSLATION protein_coding - CCDS21761.1 1 501.0 29.0 7.74 0.0 403.2 2.0 0,-4 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000030670 Cyp2r1 ENSMUST00000133484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030670 Cyp2r1 ENSMUST00000147428 ENSMUSP00000119605 TRANSLATION nonsense_mediated_decay - - 1 83.0 0.0 1.0 0.0 0.0 2.0 0,-4 0.0105 - -2.0 MINOR ENSMUSG00000040390 Map3k10 ENSMUST00000133551 - NO_TRANSLATION retained_intron ENSMUSG00000040390 Map3k10 ENSMUST00000138243 ENSMUSP00000146275 TRANSLATION protein_coding - - 1 289.0 19.0 1.8 0.0 212.2 0.0 -4,-5 0.0 - 9.332 MINOR ENSMUSG00000040390 Map3k10 ENSMUST00000036453 ENSMUSP00000037725 TRANSLATION protein_coding - CCDS39850.2 1 940.0 19.0 3.8 0.0 262.7 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:2 ENSMUSG00000040390 Map3k10 ENSMUST00000152032 - NO_TRANSLATION retained_intron ENSMUSG00000040390 Map3k10 ENSMUST00000108341 ENSMUSP00000103978 TRANSLATION protein_coding - - 5 942.0 19.0 3.8 0.0 262.7 0.0 -4,-5 0.461 6 14.0 ALTERNATIVE:2 ENSMUSG00000078757 Scgb1b29 ENSMUST00000108094 ENSMUSP00000103729 TRANSLATION protein_coding - CCDS57538.1 1 93.0 0.0 1.48 0.9 72.2 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058966 Tlcd3b ENSMUST00000205722 ENSMUSP00000145881 TRANSLATION protein_coding stop - 5 91.0 0.0 2.08 0.0 34.1 1.0 2,-2 0.0033 1 -2.0 MINOR ENSMUSG00000058966 Tlcd3b ENSMUST00000205324 ENSMUSP00000145837 TRANSLATION protein_coding - CCDS52400.1 1 275.0 0.0 4.278 3.9 154.9 7.0 2,-3 0.766 2 12.654 MINOR ENSMUSG00000058966 Tlcd3b ENSMUST00000207020 ENSMUSP00000145721 TRANSLATION protein_coding - CCDS85415.1 1 225.0 0.0 3.548 1.1 143.5 6.0 -4,-5 0.0483 1 9.465 MINOR ENSMUSG00000058966 Tlcd3b ENSMUST00000098032 ENSMUSP00000095640 TRANSLATION protein_coding - CCDS52400.1 5 275.0 0.0 4.278 3.9 154.9 7.0 2,-3 0.766 2 12.654 MINOR ENSMUSG00000058966 Tlcd3b ENSMUST00000079423 ENSMUSP00000078392 TRANSLATION protein_coding - CCDS52401.1 1 275.0 0.0 4.478 9.0 155.4 7.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000058966 Tlcd3b ENSMUST00000205888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058966 Tlcd3b ENSMUST00000206558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030934 Oat ENSMUST00000211545 ENSMUSP00000147794 TRANSLATION protein_coding stop - 2 30.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0004 1 -2.0 MINOR ENSMUSG00000030934 Oat ENSMUST00000084500 ENSMUSP00000081544 TRANSLATION protein_coding - CCDS21923.1 1 439.0 11.0 9.0 27.0 401.0 0.0 -4,0 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000030781 Slc5a2 ENSMUST00000171335 - NO_TRANSLATION retained_intron ENSMUSG00000030781 Slc5a2 ENSMUST00000136345 - NO_TRANSLATION retained_intron ENSMUSG00000030781 Slc5a2 ENSMUST00000033045 ENSMUSP00000145789 TRANSLATION protein_coding stop - 2 297.0 0.0 7.33 0.0 344.2 18.0 -4,-1 0.003 - -2.0 MINOR ENSMUSG00000030781 Slc5a2 ENSMUST00000146735 - NO_TRANSLATION retained_intron ENSMUSG00000030781 Slc5a2 ENSMUST00000206716 ENSMUSP00000145578 TRANSLATION protein_coding start - 5 382.0 0.0 6.48 0.0 287.7 11.0 -4,-6 0.003 1 -2.0 MINOR ENSMUSG00000030781 Slc5a2 ENSMUST00000137038 ENSMUSP00000124318 TRANSLATION nonsense_mediated_decay start - 3 115.0 0.0 2.725 0.0 133.8 9.0 -4,-7 0.0022 - -2.0 MINOR ENSMUSG00000030781 Slc5a2 ENSMUST00000205720 ENSMUSP00000145581 TRANSLATION nonsense_mediated_decay - - 5 466.0 0.0 8.955 0.0 394.6 19.0 -4,-7 0.0035 1 -2.0 MINOR ENSMUSG00000030781 Slc5a2 ENSMUST00000142841 ENSMUSP00000115451 TRANSLATION protein_coding stop - 3 276.0 0.0 6.455 0.0 264.8 14.0 -4,-7 0.0022 - -2.0 MINOR ENSMUSG00000030781 Slc5a2 ENSMUST00000206703 ENSMUSP00000145615 TRANSLATION nonsense_mediated_decay start - 5 154.0 0.0 2.0 0.0 96.8 5.0 -4,-7 0.0022 - -2.0 MINOR ENSMUSG00000030781 Slc5a2 ENSMUST00000153418 ENSMUSP00000145699 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 1.25 0.0 65.2 2.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000030781 Slc5a2 ENSMUST00000206909 ENSMUSP00000145739 TRANSLATION protein_coding stop - 5 254.0 0.0 6.08 0.0 254.3 14.0 -4,-7 0.0022 - -2.0 MINOR ENSMUSG00000030781 Slc5a2 ENSMUST00000118169 ENSMUSP00000112597 TRANSLATION protein_coding - CCDS21894.1 1 670.0 0.0 12.655 6.3 557.5 29.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000068962 Zfp114 ENSMUST00000206547 ENSMUSP00000146241 TRANSLATION protein_coding - CCDS39826.1 1 585.0 43.0 2.1 0.0 274.0 0.0 -4,-5 0.8964 - 14.0 PRINCIPAL:4 ENSMUSG00000068962 Zfp114 ENSMUST00000205309 ENSMUSP00000145971 TRANSLATION protein_coding stop - 1 301.0 3.0 1.16 0.0 71.8 0.0 -4,-5 0.0019 - -2.0 MINOR ENSMUSG00000068962 Zfp114 ENSMUST00000086010 ENSMUSP00000083173 TRANSLATION protein_coding - - 1 586.0 43.0 2.1 0.0 274.0 0.0 -4,-5 0.8053 - 14.0 ALTERNATIVE:2 ENSMUSG00000025102 3110040N11Rik ENSMUST00000026092 ENSMUSP00000026092 TRANSLATION protein_coding - CCDS40010.1 1 126.0 0.0 3.0 3.4 88.1 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000025102 3110040N11Rik ENSMUST00000152620 ENSMUSP00000120526 TRANSLATION nonsense_mediated_decay - - 2 45.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000025102 3110040N11Rik ENSMUST00000142557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025102 3110040N11Rik ENSMUST00000141075 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025102 3110040N11Rik ENSMUST00000154937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073947 Or51ah3 ENSMUST00000098198 ENSMUSP00000095800 TRANSLATION protein_coding - CCDS40057.1 - 313.0 0.0 1.0 2.0 350.3 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000073947 Or51ah3 ENSMUST00000214345 ENSMUSP00000148872 TRANSLATION protein_coding - CCDS40057.1 5 313.0 0.0 1.0 2.0 350.3 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000073947 Or51ah3 ENSMUST00000215673 ENSMUSP00000150166 TRANSLATION protein_coding - CCDS40057.1 5 313.0 0.0 1.0 2.0 350.3 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000003271 Sult2b1 ENSMUST00000075571 ENSMUSP00000075005 TRANSLATION protein_coding - CCDS21263.1 1 338.0 19.0 6.1485 0.0 273.8 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:2 ENSMUSG00000003271 Sult2b1 ENSMUST00000211779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003271 Sult2b1 ENSMUST00000209464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003271 Sult2b1 ENSMUST00000210021 - NO_TRANSLATION TEC ENSMUSG00000003271 Sult2b1 ENSMUST00000210147 ENSMUSP00000147564 TRANSLATION protein_coding stop - 3 130.0 6.0 2.0 0.0 61.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000003271 Sult2b1 ENSMUST00000210754 ENSMUSP00000148064 TRANSLATION protein_coding - - 1 372.0 19.0 6.0 0.0 273.8 0.0 -4,-5 0.0734 7 11.7 ALTERNATIVE:2 ENSMUSG00000003271 Sult2b1 ENSMUST00000209435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003271 Sult2b1 ENSMUST00000209739 ENSMUSP00000147374 TRANSLATION protein_coding - - 5 370.0 19.0 6.0 0.0 273.8 0.0 -4,-6 0.0777 7 11.7 ALTERNATIVE:2 ENSMUSG00000002635 Pdcd2l ENSMUST00000002710 ENSMUSP00000002710 TRANSLATION protein_coding - CCDS21137.1 1 364.0 4.0 0.0 8.3 139.9 0.0 -4,-6 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000002635 Pdcd2l ENSMUST00000125803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002635 Pdcd2l ENSMUST00000206088 - NO_TRANSLATION retained_intron ENSMUSG00000002635 Pdcd2l ENSMUST00000148381 ENSMUSP00000115874 TRANSLATION protein_coding start - 3 274.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0018 5 -2.0 MINOR ENSMUSG00000058709 Egln2 ENSMUST00000152021 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058709 Egln2 ENSMUST00000080058 ENSMUSP00000078966 TRANSLATION protein_coding - CCDS21011.1 1 419.0 3.0 3.85 1.5 67.6 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000058709 Egln2 ENSMUST00000134906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058709 Egln2 ENSMUST00000108382 ENSMUSP00000104019 TRANSLATION protein_coding - CCDS21011.1 5 419.0 3.0 3.85 1.5 67.6 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000060759 Or52n4b ENSMUST00000211693 ENSMUSP00000147778 TRANSLATION protein_coding - - - 321.0 0.0 1.0 12.9 343.5 6.0 -4,-7 0.8891 - 11.0 ALTERNATIVE:1 ENSMUSG00000060759 Or52n4b ENSMUST00000078162 ENSMUSP00000077296 TRANSLATION protein_coding - CCDS21718.1 - 323.0 0.0 1.0 12.9 343.5 6.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000070459 Or5ae1 ENSMUST00000216184 ENSMUSP00000149113 TRANSLATION nonsense_mediated_decay - CCDS21421.1 5 315.0 0.0 1.0 5.4 178.0 6.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000070459 Or5ae1 ENSMUST00000214501 ENSMUSP00000149411 TRANSLATION protein_coding - CCDS21421.1 5 315.0 0.0 1.0 5.4 178.0 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070459 Or5ae1 ENSMUST00000216367 ENSMUSP00000149523 TRANSLATION protein_coding - CCDS21421.1 5 315.0 0.0 1.0 5.4 178.0 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000023072 Cep89 ENSMUST00000079414 ENSMUSP00000078383 TRANSLATION protein_coding - CCDS39911.1 1 791.0 0.0 0.0 0.4 0.0 0.0 -4,0 0.9392 2 0.0 PRINCIPAL:1 ENSMUSG00000023072 Cep89 ENSMUST00000150421 ENSMUSP00000121422 TRANSLATION protein_coding start - 3 199.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0291 - -2.0 MINOR ENSMUSG00000023072 Cep89 ENSMUST00000206854 ENSMUSP00000145536 TRANSLATION nonsense_mediated_decay - - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0361 - -2.0 MINOR ENSMUSG00000023072 Cep89 ENSMUST00000129064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023072 Cep89 ENSMUST00000148166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023072 Cep89 ENSMUST00000152020 - NO_TRANSLATION retained_intron ENSMUSG00000023072 Cep89 ENSMUST00000155137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023072 Cep89 ENSMUST00000141704 ENSMUSP00000121393 TRANSLATION nonsense_mediated_decay - - 1 639.0 0.0 0.0 0.1 0.0 0.0 -4,0 0.09 2 -2.0 MINOR ENSMUSG00000023072 Cep89 ENSMUST00000125041 - NO_TRANSLATION retained_intron ENSMUSG00000023072 Cep89 ENSMUST00000140418 - NO_TRANSLATION retained_intron ENSMUSG00000023072 Cep89 ENSMUST00000206230 ENSMUSP00000145618 TRANSLATION nonsense_mediated_decay start - 3 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0145 1 -2.0 MINOR ENSMUSG00000030793 Pycard ENSMUST00000205594 ENSMUSP00000146211 TRANSLATION protein_coding start - 5 151.0 0.0 2.4 0.0 107.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000030793 Pycard ENSMUST00000033056 ENSMUSP00000033056 TRANSLATION protein_coding - CCDS21888.1 1 193.0 0.0 3.4 9.1 147.3 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000115027 Vmn1r81 ENSMUST00000227973 ENSMUSP00000154529 TRANSLATION protein_coding - CCDS20806.1 - 306.0 0.0 0.0 0.4 101.8 5.0 -2,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115027 Vmn1r81 ENSMUST00000086232 ENSMUSP00000083409 TRANSLATION protein_coding - CCDS20806.1 - 306.0 0.0 0.0 0.4 101.8 5.0 -2,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000115027 Vmn1r81 ENSMUST00000227080 ENSMUSP00000153719 TRANSLATION protein_coding - - - 339.0 0.0 0.0 0.0 95.9 5.0 -2,-5 0.0312 - 0.0 MINOR ENSMUSG00000115027 Vmn1r81 ENSMUST00000228482 ENSMUSP00000153780 TRANSLATION protein_coding - - - 339.0 0.0 0.0 0.0 95.9 5.0 -2,-5 0.0312 - 0.0 MINOR ENSMUSG00000115027 Vmn1r81 ENSMUST00000228764 ENSMUSP00000153767 TRANSLATION protein_coding - CCDS20806.1 - 306.0 0.0 0.0 0.4 101.8 5.0 -2,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000045792 Or51g1 ENSMUST00000056235 ENSMUSP00000058167 TRANSLATION protein_coding - CCDS21557.1 - 313.0 0.0 1.0 5.0 431.3 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000045792 Or51g1 ENSMUST00000215606 ENSMUSP00000149209 TRANSLATION protein_coding - CCDS21557.1 5 313.0 0.0 1.0 5.0 431.3 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025790 Slco3a1 ENSMUST00000134539 ENSMUSP00000116946 TRANSLATION protein_coding start/stop - 3 219.0 0.0 0.0 0.0 233.2 7.0 0,-3 0.0051 - -2.0 MINOR ENSMUSG00000025790 Slco3a1 ENSMUST00000142175 - NO_TRANSLATION retained_intron ENSMUSG00000025790 Slco3a1 ENSMUST00000138099 ENSMUSP00000115279 TRANSLATION protein_coding stop - 2 165.0 0.0 0.0 0.0 128.5 4.0 -4,-7 0.0023 - -2.0 MINOR ENSMUSG00000025790 Slco3a1 ENSMUST00000107453 ENSMUSP00000103077 TRANSLATION protein_coding - - 1 602.0 0.0 0.0 0.0 564.3 21.0 -4,-5 0.0162 2 2.226 MINOR ENSMUSG00000025790 Slco3a1 ENSMUST00000026897 ENSMUSP00000026897 TRANSLATION protein_coding - CCDS21367.1 1 710.0 0.0 0.0 10.3 627.2 23.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000025790 Slco3a1 ENSMUST00000098371 ENSMUSP00000095973 TRANSLATION protein_coding - CCDS21366.1 1 692.0 0.0 0.0 4.5 627.2 23.0 -4,-5 0.5943 2 7.128 MINOR ENSMUSG00000025790 Slco3a1 ENSMUST00000136389 - NO_TRANSLATION retained_intron ENSMUSG00000025790 Slco3a1 ENSMUST00000129292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002981 Clptm1 ENSMUST00000208868 - NO_TRANSLATION retained_intron ENSMUSG00000002981 Clptm1 ENSMUST00000208846 - NO_TRANSLATION retained_intron ENSMUSG00000002981 Clptm1 ENSMUST00000055242 ENSMUSP00000051293 TRANSLATION protein_coding - CCDS39800.1 1 664.0 0.0 0.0 5.3 491.4 0.0 -3,-4 1.0 13 8.0 PRINCIPAL:1 ENSMUSG00000002981 Clptm1 ENSMUST00000208174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002981 Clptm1 ENSMUST00000208594 - NO_TRANSLATION retained_intron ENSMUSG00000002981 Clptm1 ENSMUST00000208554 - NO_TRANSLATION retained_intron ENSMUSG00000002981 Clptm1 ENSMUST00000208215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002981 Clptm1 ENSMUST00000207704 - NO_TRANSLATION retained_intron ENSMUSG00000002981 Clptm1 ENSMUST00000208599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047031 Vmn1r68 ENSMUST00000238012 ENSMUSP00000157911 TRANSLATION nonsense_mediated_decay - CCDS52009.1 - 319.0 0.0 0.0 0.0 110.0 7.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000047031 Vmn1r68 ENSMUST00000058362 ENSMUSP00000050927 TRANSLATION protein_coding - CCDS52009.1 - 319.0 0.0 0.0 0.0 110.0 7.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047031 Vmn1r68 ENSMUST00000238003 ENSMUSP00000157653 TRANSLATION nonsense_mediated_decay - CCDS52009.1 - 319.0 0.0 0.0 0.0 110.0 7.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000047031 Vmn1r68 ENSMUST00000235324 ENSMUSP00000158011 TRANSLATION nonsense_mediated_decay - - - 269.0 0.0 0.0 0.0 105.7 6.0 -4,-2 0.0257 - -2.0 MINOR ENSMUSG00000047031 Vmn1r68 ENSMUST00000236246 ENSMUSP00000157627 TRANSLATION protein_coding - CCDS52009.1 - 319.0 0.0 0.0 0.0 110.0 7.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044452 Zfp507 ENSMUST00000206615 ENSMUSP00000145751 TRANSLATION protein_coding start - 1 303.0 18.0 2.375 0.0 0.0 0.0 -4,-6 0.0407 3 -2.0 MINOR ENSMUSG00000044452 Zfp507 ENSMUST00000206003 - NO_TRANSLATION retained_intron ENSMUSG00000044452 Zfp507 ENSMUST00000206761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044452 Zfp507 ENSMUST00000205670 ENSMUSP00000146278 TRANSLATION protein_coding stop - 3 120.0 1.0 0.0 0.0 0.0 0.0 -4,-5 0.0145 - -2.0 MINOR ENSMUSG00000044452 Zfp507 ENSMUST00000061586 ENSMUSP00000058609 TRANSLATION protein_coding - CCDS52204.1 1 941.0 25.0 2.507 0.4 0.0 0.0 -4,-5 0.9656 4 12.0 PRINCIPAL:1 ENSMUSG00000044452 Zfp507 ENSMUST00000187282 ENSMUSP00000140940 TRANSLATION protein_coding stop - 3 145.0 4.0 0.375 0.0 0.0 0.0 -4,-5 0.0064 3 -2.0 MINOR ENSMUSG00000044452 Zfp507 ENSMUST00000144656 - NO_TRANSLATION retained_intron ENSMUSG00000038801 Scgb1c1 ENSMUST00000035300 ENSMUSP00000048722 TRANSLATION protein_coding - CCDS40176.1 2 95.0 0.0 1.33 0.0 52.5 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000025465 Echs1 ENSMUST00000151505 - NO_TRANSLATION retained_intron ENSMUSG00000025465 Echs1 ENSMUST00000125337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025465 Echs1 ENSMUST00000155647 - NO_TRANSLATION retained_intron ENSMUSG00000025465 Echs1 ENSMUST00000147643 - NO_TRANSLATION retained_intron ENSMUSG00000025465 Echs1 ENSMUST00000211120 - NO_TRANSLATION retained_intron ENSMUSG00000025465 Echs1 ENSMUST00000026538 ENSMUSP00000026538 TRANSLATION protein_coding - CCDS21964.1 1 290.0 27.0 6.5 12.5 341.7 0.0 -2,2 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000058132 Vmn1r82 ENSMUST00000191002 ENSMUSP00000140782 TRANSLATION protein_coding start - - 305.0 0.0 0.4 0.4 94.2 7.0 -4,-5 0.2842 - -2.0 MINOR ENSMUSG00000058132 Vmn1r82 ENSMUST00000072801 ENSMUSP00000072580 TRANSLATION protein_coding - CCDS57493.1 - 304.0 0.0 0.4 0.4 94.2 7.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058132 Vmn1r82 ENSMUST00000227672 ENSMUSP00000154524 TRANSLATION protein_coding - - - 187.0 0.0 0.0 0.0 52.1 5.0 -2,-4 0.0068 - 3.318 MINOR ENSMUSG00000054054 Or13g1 ENSMUST00000174158 ENSMUSP00000134377 TRANSLATION protein_coding - CCDS21424.1 2 308.0 0.0 1.0 9.6 187.0 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054054 Or13g1 ENSMUST00000055690 ENSMUSP00000061929 TRANSLATION protein_coding - CCDS21424.1 - 308.0 0.0 1.0 9.6 187.0 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000086784 Isoc2a ENSMUST00000125249 ENSMUSP00000131514 TRANSLATION protein_coding - CCDS51978.1 1 206.0 0.0 4.5 8.3 0.0 0.0 -4,-2 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000094931 Vmn1r160 ENSMUST00000171745 ENSMUSP00000129858 TRANSLATION protein_coding - CCDS52122.1 - 307.0 0.0 0.0 0.4 58.8 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000042828 Trim72 ENSMUST00000106248 ENSMUSP00000101855 TRANSLATION protein_coding - CCDS40148.1 5 477.0 16.0 5.33 10.5 152.7 0.0 -2,-5 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000042828 Trim72 ENSMUST00000081042 ENSMUSP00000079832 TRANSLATION protein_coding - CCDS40148.1 1 477.0 16.0 5.33 10.5 152.7 0.0 -2,-5 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000048312 Gm4884 ENSMUST00000164422 ENSMUSP00000133059 TRANSLATION protein_coding - CCDS52208.1 2 694.0 0.0 0.0 0.0 195.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000025510 Cd151 ENSMUST00000177840 ENSMUSP00000136331 TRANSLATION protein_coding - CCDS22017.1 5 253.0 0.0 3.575 29.2 186.1 8.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000025510 Cd151 ENSMUST00000211071 ENSMUSP00000148013 TRANSLATION protein_coding stop - 2 139.0 0.0 2.175 0.0 99.1 7.0 -4,-5 0.0044 1 -2.0 MINOR ENSMUSG00000025510 Cd151 ENSMUST00000210308 - NO_TRANSLATION retained_intron ENSMUSG00000025510 Cd151 ENSMUST00000209892 ENSMUSP00000147978 TRANSLATION protein_coding stop - 3 202.0 0.0 2.975 0.0 149.8 7.0 -4,-5 0.0034 4 -2.0 MINOR ENSMUSG00000025510 Cd151 ENSMUST00000211522 - NO_TRANSLATION retained_intron ENSMUSG00000025510 Cd151 ENSMUST00000209698 - NO_TRANSLATION retained_intron ENSMUSG00000025510 Cd151 ENSMUST00000058746 ENSMUSP00000061636 TRANSLATION protein_coding - CCDS22017.1 1 253.0 0.0 3.575 29.2 186.1 8.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000025510 Cd151 ENSMUST00000210058 - NO_TRANSLATION retained_intron ENSMUSG00000025510 Cd151 ENSMUST00000209988 ENSMUSP00000147510 TRANSLATION protein_coding stop - 3 150.0 0.0 2.439 0.0 102.4 7.0 -4,-5 0.0037 3 -2.0 MINOR ENSMUSG00000025510 Cd151 ENSMUST00000106000 ENSMUSP00000101622 TRANSLATION protein_coding - CCDS22017.1 5 253.0 0.0 3.575 29.2 186.1 8.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000095768 Vmn1r111 ENSMUST00000179511 ENSMUSP00000137063 TRANSLATION protein_coding - CCDS52079.1 - 306.0 0.0 0.0 0.4 56.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091811 Inafm1 ENSMUST00000169612 ENSMUSP00000127027 TRANSLATION protein_coding - CCDS52038.1 - 130.0 0.0 0.4 1.4 52.3 0.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000030842 Lamtor1 ENSMUST00000193465 ENSMUSP00000141774 TRANSLATION protein_coding - - 5 142.0 0.0 2.515 0.0 73.7 0.0 -4,-5 0.0008 4 10.332 MINOR ENSMUSG00000030842 Lamtor1 ENSMUST00000033131 ENSMUSP00000033131 TRANSLATION protein_coding - CCDS21519.1 1 161.0 0.0 3.35 32.9 73.7 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000030842 Lamtor1 ENSMUST00000211180 - NO_TRANSLATION retained_intron ENSMUSG00000054046 Klk13 ENSMUST00000206554 ENSMUSP00000145746 TRANSLATION protein_coding stop - 3 95.0 3.0 1.5 0.0 58.1 0.0 2,-3 0.002 1 -2.0 MINOR ENSMUSG00000054046 Klk13 ENSMUST00000205457 ENSMUSP00000145875 TRANSLATION protein_coding stop - 3 107.0 5.0 2.0 0.0 84.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000054046 Klk13 ENSMUST00000066834 ENSMUSP00000065308 TRANSLATION protein_coding - CCDS39933.1 1 276.0 15.0 4.83 6.9 249.4 0.0 2,-3 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000110091 Gm39115 ENSMUST00000211350 ENSMUSP00000147940 TRANSLATION protein_coding - CCDS85463.1 - 232.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8922 - 0.0 PRINCIPAL:1 ENSMUSG00000095910 Or5p50 ENSMUST00000216431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095910 Or5p50 ENSMUST00000213252 ENSMUSP00000150486 TRANSLATION protein_coding - CCDS21693.1 5 314.0 0.0 1.0 11.4 177.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095910 Or5p50 ENSMUST00000075704 ENSMUSP00000075122 TRANSLATION protein_coding - CCDS21693.1 - 314.0 0.0 1.0 11.4 177.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051550 Zfp579 ENSMUST00000159754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051550 Zfp579 ENSMUST00000162502 ENSMUSP00000124074 TRANSLATION protein_coding stop - 2 236.0 12.0 0.4 0.0 58.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051550 Zfp579 ENSMUST00000162731 ENSMUSP00000123963 TRANSLATION protein_coding - CCDS39744.1 - 562.0 32.0 0.6 0.0 149.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000051550 Zfp579 ENSMUST00000108572 ENSMUSP00000104212 TRANSLATION protein_coding - CCDS39744.1 2 562.0 32.0 0.6 0.0 149.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000051550 Zfp579 ENSMUST00000160808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051550 Zfp579 ENSMUST00000160225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035401 Emsy ENSMUST00000205331 - NO_TRANSLATION retained_intron ENSMUSG00000035401 Emsy ENSMUST00000206565 - NO_TRANSLATION retained_intron ENSMUSG00000035401 Emsy ENSMUST00000206813 - NO_TRANSLATION retained_intron ENSMUSG00000035401 Emsy ENSMUST00000206611 ENSMUSP00000145640 TRANSLATION protein_coding stop - 5 316.0 0.0 3.5 0.0 100.2 0.0 -4,-5 0.0245 2 -2.0 MINOR ENSMUSG00000035401 Emsy ENSMUST00000206619 ENSMUSP00000146150 TRANSLATION protein_coding stop - 1 735.0 0.0 3.5 0.0 100.2 0.0 -4,-5 0.0465 9 -2.0 MINOR ENSMUSG00000035401 Emsy ENSMUST00000205911 ENSMUSP00000146011 TRANSLATION protein_coding - - 5 1070.0 0.0 2.75 0.0 52.2 0.0 -4,-5 0.0119 15 7.62 MINOR ENSMUSG00000035401 Emsy ENSMUST00000205513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035401 Emsy ENSMUST00000205485 - NO_TRANSLATION retained_intron ENSMUSG00000035401 Emsy ENSMUST00000205886 ENSMUSP00000145662 TRANSLATION protein_coding start/stop - 5 235.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 2 -2.0 MINOR ENSMUSG00000035401 Emsy ENSMUST00000206256 ENSMUSP00000146056 TRANSLATION protein_coding start/stop - 3 200.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000035401 Emsy ENSMUST00000206626 ENSMUSP00000146262 TRANSLATION protein_coding start/stop - 3 246.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 5 -2.0 MINOR ENSMUSG00000035401 Emsy ENSMUST00000038359 ENSMUSP00000038216 TRANSLATION protein_coding - - 1 1118.0 0.0 3.5 1.0 93.5 0.0 -4,-5 0.1647 15 11.598 MINOR ENSMUSG00000035401 Emsy ENSMUST00000205276 ENSMUSP00000145858 TRANSLATION protein_coding - CCDS40028.1 1 1264.0 0.0 3.5 8.0 93.5 0.0 -4,-5 1.0 18 14.598 PRINCIPAL:1 ENSMUSG00000025723 Nmb ENSMUST00000026817 ENSMUSP00000026817 TRANSLATION protein_coding - CCDS21400.1 1 121.0 0.0 0.0 3.1 0.0 0.0 4,-1 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000025723 Nmb ENSMUST00000119428 ENSMUSP00000113407 TRANSLATION protein_coding - CCDS80742.1 2 131.0 0.0 0.0 0.1 0.0 0.0 4,-1 0.25 - 0.0 ALTERNATIVE:2 ENSMUSG00000025723 Nmb ENSMUST00000146619 - NO_TRANSLATION retained_intron ENSMUSG00000025723 Nmb ENSMUST00000149792 - NO_TRANSLATION retained_intron ENSMUSG00000009246 Trpm5 ENSMUST00000150589 - NO_TRANSLATION retained_intron ENSMUSG00000009246 Trpm5 ENSMUST00000009390 ENSMUSP00000009390 TRANSLATION protein_coding - CCDS52462.1 1 1158.0 0.0 15.99 0.1 40.7 6.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000009246 Trpm5 ENSMUST00000146075 - NO_TRANSLATION retained_intron ENSMUSG00000009246 Trpm5 ENSMUST00000136602 ENSMUSP00000122685 TRANSLATION protein_coding start - 5 74.0 0.0 1.35 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000009246 Trpm5 ENSMUST00000148715 ENSMUSP00000121802 TRANSLATION protein_coding start - 3 190.0 0.0 2.95 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000009246 Trpm5 ENSMUST00000133027 - NO_TRANSLATION retained_intron ENSMUSG00000009246 Trpm5 ENSMUST00000126776 - NO_TRANSLATION retained_intron ENSMUSG00000009246 Trpm5 ENSMUST00000150867 ENSMUSP00000114302 TRANSLATION nonsense_mediated_decay - - 2 1000.0 0.0 12.54 0.0 34.7 6.0 -4,-5 0.0423 1 -2.0 MINOR ENSMUSG00000052974 Cyp2f2 ENSMUST00000133841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052974 Cyp2f2 ENSMUST00000003100 ENSMUSP00000003100 TRANSLATION protein_coding - CCDS21010.1 1 491.0 51.0 10.05 14.3 507.2 0.0 2,-3 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000052974 Cyp2f2 ENSMUST00000206552 ENSMUSP00000146037 TRANSLATION protein_coding start/stop - 3 208.0 21.0 4.75 0.0 174.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000060688 Or14c39 ENSMUST00000080165 ENSMUSP00000079060 TRANSLATION protein_coding - CCDS21435.1 2 308.0 0.0 1.0 5.3 161.4 0.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030386 Zfp606 ENSMUST00000133515 - NO_TRANSLATION retained_intron ENSMUSG00000030386 Zfp606 ENSMUST00000098822 ENSMUSP00000096421 TRANSLATION protein_coding - CCDS20810.1 1 794.0 58.0 0.8 6.9 364.2 0.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000030386 Zfp606 ENSMUST00000151933 ENSMUSP00000122197 TRANSLATION nonsense_mediated_decay - - 1 68.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030386 Zfp606 ENSMUST00000123589 ENSMUSP00000147558 TRANSLATION protein_coding - CCDS85215.1 1 87.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0289 - 0.0 MINOR ENSMUSG00000066189 Cacng3 ENSMUST00000182095 ENSMUSP00000138755 TRANSLATION protein_coding stop - 5 186.0 0.0 2.93 0.0 130.8 3.0 -2,-5 0.0038 - -2.0 MINOR ENSMUSG00000066189 Cacng3 ENSMUST00000084615 ENSMUSP00000081664 TRANSLATION protein_coding - CCDS21816.1 1 315.0 0.0 3.68 30.9 170.8 3.0 -2,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000066189 Cacng3 ENSMUST00000182563 ENSMUSP00000138495 TRANSLATION protein_coding stop - 5 127.0 0.0 0.33 0.0 77.4 1.0 -2,-5 0.0015 3 -2.0 MINOR ENSMUSG00000063160 Numbl ENSMUST00000149805 - NO_TRANSLATION retained_intron ENSMUSG00000063160 Numbl ENSMUST00000079258 ENSMUSP00000078245 TRANSLATION protein_coding - CCDS21016.1 1 604.0 0.0 4.1 4.8 199.1 0.0 -4,-2 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000063160 Numbl ENSMUST00000134215 - NO_TRANSLATION retained_intron ENSMUSG00000063160 Numbl ENSMUST00000132897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063160 Numbl ENSMUST00000144010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047649 Polr1g ENSMUST00000047036 ENSMUSP00000044653 TRANSLATION protein_coding - CCDS39798.1 1 399.0 0.0 0.0 0.0 112.1 0.0 -4,-7 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000047649 Polr1g ENSMUST00000176333 - NO_TRANSLATION retained_intron ENSMUSG00000094700 Vmn1r158 ENSMUST00000174643 ENSMUSP00000133990 TRANSLATION protein_coding - CCDS59720.1 - 307.0 0.0 0.0 0.4 57.5 0.0 -2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045780 Or51v8 ENSMUST00000062144 ENSMUSP00000049938 TRANSLATION protein_coding - CCDS21585.1 - 308.0 0.0 1.0 5.6 456.3 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096691 Vmn2r33 ENSMUST00000165921 ENSMUSP00000129960 TRANSLATION protein_coding - CCDS51997.1 5 861.0 4.0 2.25 0.1 390.5 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000084262 Or51p1 ENSMUST00000118682 ENSMUSP00000148130 TRANSLATION protein_coding - - 5 313.0 0.0 1.33 13.5 392.1 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000084262 Or51p1 ENSMUST00000210115 ENSMUSP00000147533 TRANSLATION protein_coding stop - - 304.0 0.0 1.0 0.0 387.4 7.0 -4,-7 0.0726 - -2.0 MINOR ENSMUSG00000095806 Vmn1r244 ENSMUST00000105209 ENSMUSP00000100844 TRANSLATION protein_coding - CCDS71898.1 - 305.0 0.0 0.0 0.4 49.4 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046750 Selenov ENSMUST00000056589 ENSMUSP00000050372 TRANSLATION protein_coding - CCDS39855.1 1 328.0 0.0 2.33 0.1 45.7 0.0 -4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000046750 Selenov ENSMUST00000156408 ENSMUSP00000115405 TRANSLATION protein_coding start - 3 46.0 0.0 1.5 0.0 27.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062797 Hikeshi ENSMUST00000208357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062797 Hikeshi ENSMUST00000075010 ENSMUSP00000102856 TRANSLATION protein_coding - CCDS80748.1 3 158.0 0.0 3.63 8.7 129.9 0.0 -4,-5 0.149 2 7.156 MINOR ENSMUSG00000062797 Hikeshi ENSMUST00000207309 ENSMUSP00000147050 TRANSLATION protein_coding - - 5 130.0 0.0 1.88 0.0 116.4 0.0 -4,-7 0.0 2 1.92 MINOR ENSMUSG00000062797 Hikeshi ENSMUST00000153470 ENSMUSP00000119806 TRANSLATION protein_coding - CCDS21445.1 1 197.0 0.0 4.71 34.2 190.1 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000062797 Hikeshi ENSMUST00000130609 ENSMUSP00000147023 TRANSLATION protein_coding stop - 3 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062797 Hikeshi ENSMUST00000207695 - NO_TRANSLATION retained_intron ENSMUSG00000062797 Hikeshi ENSMUST00000150740 ENSMUSP00000146855 TRANSLATION protein_coding start - 3 100.0 0.0 2.462 0.0 43.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000062797 Hikeshi ENSMUST00000078918 ENSMUSP00000077951 TRANSLATION nonsense_mediated_decay - - 1 90.0 0.0 1.88 0.0 116.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000110234 Gm45799 ENSMUST00000106785 ENSMUSP00000102397 TRANSLATION protein_coding,RT - - 3 93.0 0.0 2.33 0.0 56.1 0.0 -4,-7 0.0143 - -2.0 ALTERNATIVE:2 ENSMUSG00000110234 Gm45799 ENSMUST00000142363 ENSMUSP00000148105 TRANSLATION nonsense_mediated_decay,RT - CCDS21657.1 1 100.0 0.0 2.33 4.3 56.1 0.0 -4,-7 1.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000110234 Gm45799 ENSMUST00000142874 ENSMUSP00000147621 TRANSLATION nonsense_mediated_decay,RT - CCDS21657.1 2 100.0 0.0 2.33 4.3 56.1 0.0 -4,-7 1.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000110234 Gm45799 ENSMUST00000106786 ENSMUSP00000102398 TRANSLATION protein_coding,RT - - 3 109.0 0.0 2.33 0.0 56.1 0.0 -4,-7 0.0146 - -2.0 PRINCIPAL:5 ENSMUSG00000110234 Gm45799 ENSMUST00000210893 ENSMUSP00000147549 TRANSLATION protein_coding,RT start - 1 61.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000110234 Gm45799 ENSMUST00000149819 ENSMUSP00000122446 TRANSLATION nonsense_mediated_decay,RT - - 3 68.0 0.0 1.33 0.0 0.0 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000110234 Gm45799 ENSMUST00000210312 ENSMUSP00000147351 TRANSLATION nonsense_mediated_decay,RT start - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000110234 Gm45799 ENSMUST00000211054 ENSMUSP00000148176 TRANSLATION protein_coding,RT - CCDS21657.1 3 100.0 0.0 2.33 4.3 56.1 0.0 -4,-7 1.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000006154 Eps8l1 ENSMUST00000163893 ENSMUSP00000125840 TRANSLATION protein_coding - CCDS20736.1 1 716.0 2.0 7.11 2.2 190.0 0.0 -4,-6 1.0 20 11.0 PRINCIPAL:2 ENSMUSG00000006154 Eps8l1 ENSMUST00000086372 ENSMUSP00000083559 TRANSLATION protein_coding - CCDS20736.1 1 716.0 2.0 7.11 2.2 190.0 0.0 -4,-6 1.0 20 11.0 PRINCIPAL:2 ENSMUSG00000006154 Eps8l1 ENSMUST00000163804 ENSMUSP00000133102 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000006154 Eps8l1 ENSMUST00000163137 ENSMUSP00000131345 TRANSLATION nonsense_mediated_decay - - 2 109.0 1.0 1.83 0.0 72.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000006154 Eps8l1 ENSMUST00000169820 ENSMUSP00000131773 TRANSLATION protein_coding stop - 3 93.0 1.0 1.83 0.0 71.4 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000006154 Eps8l1 ENSMUST00000167599 - NO_TRANSLATION retained_intron ENSMUSG00000006154 Eps8l1 ENSMUST00000170423 - NO_TRANSLATION retained_intron ENSMUSG00000006154 Eps8l1 ENSMUST00000167068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006154 Eps8l1 ENSMUST00000167298 ENSMUSP00000133142 TRANSLATION protein_coding stop - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000006154 Eps8l1 ENSMUST00000170635 ENSMUSP00000127999 TRANSLATION protein_coding stop - 5 52.0 1.0 0.83 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000006154 Eps8l1 ENSMUST00000164987 ENSMUSP00000130665 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000006154 Eps8l1 ENSMUST00000167810 ENSMUSP00000126720 TRANSLATION protein_coding stop - 5 152.0 2.0 3.16 0.0 144.4 0.0 -4,-6 0.0008 6 -2.0 MINOR ENSMUSG00000006154 Eps8l1 ENSMUST00000171445 ENSMUSP00000133206 TRANSLATION protein_coding - - 5 777.0 2.0 7.11 0.0 190.0 0.0 -4,-5 0.0601 20 10.0 ALTERNATIVE:2 ENSMUSG00000006154 Eps8l1 ENSMUST00000168924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118318 Vmn1r183 ENSMUST00000236959 ENSMUSP00000157576 TRANSLATION protein_coding - CCDS20940.1 - 305.0 0.0 0.0 0.4 61.2 4.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000118318 Vmn1r183 ENSMUST00000086012 ENSMUSP00000083176 TRANSLATION protein_coding - CCDS20940.1 - 305.0 0.0 0.0 0.4 61.2 4.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000073893 Or5p52 ENSMUST00000210420 ENSMUSP00000147272 TRANSLATION protein_coding - CCDS21695.1 - 310.0 0.0 1.0 12.5 162.7 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073893 Or5p52 ENSMUST00000209670 ENSMUSP00000148150 TRANSLATION protein_coding - CCDS21695.1 3 310.0 0.0 1.0 12.5 162.7 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073893 Or5p52 ENSMUST00000216937 ENSMUSP00000150404 TRANSLATION protein_coding - CCDS21695.1 3 310.0 0.0 1.0 12.5 162.7 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031024 Dennd2b ENSMUST00000168005 ENSMUSP00000130119 TRANSLATION protein_coding - CCDS21735.1 5 717.0 0.0 6.68 10.1 305.7 0.0 -4,-6 1.0 8 11.0 PRINCIPAL:2 ENSMUSG00000031024 Dennd2b ENSMUST00000207745 ENSMUSP00000146934 TRANSLATION protein_coding stop - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031024 Dennd2b ENSMUST00000084738 ENSMUSP00000081789 TRANSLATION protein_coding - CCDS21735.1 5 717.0 0.0 6.68 10.1 305.7 0.0 -4,-6 1.0 8 11.0 PRINCIPAL:2 ENSMUSG00000031024 Dennd2b ENSMUST00000079282 ENSMUSP00000078264 TRANSLATION protein_coding - CCDS21734.1 5 1134.0 0.0 6.68 7.0 305.7 0.0 -4,-7 0.675 18 9.977 ALTERNATIVE:1 ENSMUSG00000031024 Dennd2b ENSMUST00000208583 ENSMUSP00000146747 TRANSLATION protein_coding stop - 3 101.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000031024 Dennd2b ENSMUST00000208734 ENSMUSP00000146829 TRANSLATION protein_coding stop - 2 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031024 Dennd2b ENSMUST00000208557 - NO_TRANSLATION retained_intron ENSMUSG00000031024 Dennd2b ENSMUST00000207664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031024 Dennd2b ENSMUST00000077909 ENSMUSP00000077067 TRANSLATION protein_coding - CCDS21734.1 1 1134.0 0.0 6.68 7.0 305.7 0.0 -4,-7 0.675 18 9.977 ALTERNATIVE:1 ENSMUSG00000031024 Dennd2b ENSMUST00000207394 ENSMUSP00000146549 TRANSLATION protein_coding stop - 2 95.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000031024 Dennd2b ENSMUST00000208981 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030727 Rabep2 ENSMUST00000148536 - NO_TRANSLATION retained_intron ENSMUSG00000030727 Rabep2 ENSMUST00000150530 ENSMUSP00000122141 TRANSLATION nonsense_mediated_decay - - 2 60.0 0.0 0.0 0.0 43.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030727 Rabep2 ENSMUST00000141764 - NO_TRANSLATION retained_intron ENSMUSG00000030727 Rabep2 ENSMUST00000127154 - NO_TRANSLATION retained_intron ENSMUSG00000030727 Rabep2 ENSMUST00000150933 ENSMUSP00000123559 TRANSLATION nonsense_mediated_decay - - 3 92.0 0.0 0.0 0.0 68.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000030727 Rabep2 ENSMUST00000106407 ENSMUSP00000102015 TRANSLATION protein_coding - CCDS21829.2 1 554.0 0.0 2.75 0.0 191.9 0.0 -4,-5 0.3499 15 6.0 ALTERNATIVE:2 ENSMUSG00000030727 Rabep2 ENSMUST00000106405 ENSMUSP00000102013 TRANSLATION protein_coding - - 1 511.0 0.0 2.75 1.0 175.1 0.0 -4,-5 0.4836 15 6.0 PRINCIPAL:4 ENSMUSG00000030727 Rabep2 ENSMUST00000151304 - NO_TRANSLATION retained_intron ENSMUSG00000030727 Rabep2 ENSMUST00000133300 - NO_TRANSLATION retained_intron ENSMUSG00000054715 Zscan22 ENSMUST00000055528 ENSMUSP00000057651 TRANSLATION protein_coding - CCDS20816.1 1 496.0 31.0 0.8 0.1 330.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000054715 Zscan22 ENSMUST00000119989 ENSMUSP00000113486 TRANSLATION protein_coding - CCDS71889.1 1 337.0 31.0 0.8 0.0 204.0 0.0 -4,-5 0.2844 1 12.0 MINOR ENSMUSG00000054715 Zscan22 ENSMUST00000120809 ENSMUSP00000113314 TRANSLATION protein_coding - CCDS20816.1 1 496.0 31.0 0.8 0.1 330.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000054715 Zscan22 ENSMUST00000117189 ENSMUSP00000112684 TRANSLATION protein_coding - CCDS71889.1 1 337.0 31.0 0.8 0.0 204.0 0.0 -4,-5 0.2844 1 12.0 MINOR ENSMUSG00000044465 Fhip1b ENSMUST00000211549 ENSMUSP00000147759 TRANSLATION nonsense_mediated_decay start - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000044465 Fhip1b ENSMUST00000118726 ENSMUSP00000112605 TRANSLATION protein_coding - CCDS57575.1 1 791.0 0.0 0.0 4.9 319.2 0.0 -4,-2 0.6446 18 1.329 MINOR ENSMUSG00000044465 Fhip1b ENSMUST00000210972 - NO_TRANSLATION retained_intron ENSMUSG00000044465 Fhip1b ENSMUST00000179474 ENSMUSP00000137163 TRANSLATION protein_coding - CCDS21649.1 1 975.0 0.0 0.0 7.3 319.2 0.0 -4,-2 0.8744 17 2.148 ALTERNATIVE:1 ENSMUSG00000044465 Fhip1b ENSMUST00000137158 ENSMUSP00000119184 TRANSLATION nonsense_mediated_decay - - 1 260.0 0.0 0.0 0.0 129.2 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000044465 Fhip1b ENSMUST00000210341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044465 Fhip1b ENSMUST00000048079 ENSMUSP00000045084 TRANSLATION protein_coding - CCDS57574.1 1 989.0 0.0 0.0 9.8 319.2 0.0 -4,-2 1.0 19 3.0 PRINCIPAL:3 ENSMUSG00000044465 Fhip1b ENSMUST00000210448 ENSMUSP00000147323 TRANSLATION nonsense_mediated_decay start - 2 185.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000044465 Fhip1b ENSMUST00000122327 ENSMUSP00000112711 TRANSLATION protein_coding - CCDS21649.1 1 975.0 0.0 0.0 7.3 319.2 0.0 -4,-2 0.8744 17 2.148 ALTERNATIVE:1 ENSMUSG00000044465 Fhip1b ENSMUST00000136298 - NO_TRANSLATION retained_intron ENSMUSG00000044465 Fhip1b ENSMUST00000142559 - NO_TRANSLATION retained_intron ENSMUSG00000044465 Fhip1b ENSMUST00000211013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044465 Fhip1b ENSMUST00000074686 ENSMUSP00000074252 TRANSLATION protein_coding - - 5 909.0 0.0 0.0 0.0 319.2 0.0 -4,-2 0.092 14 0.0 MINOR ENSMUSG00000094819 Or13a20 ENSMUST00000211057 ENSMUSP00000147530 TRANSLATION protein_coding stop - 2 102.0 0.0 1.33 0.0 44.2 2.0 -4,-7 0.0018 - -2.0 MINOR ENSMUSG00000094819 Or13a20 ENSMUST00000084456 ENSMUSP00000081494 TRANSLATION protein_coding - CCDS57593.1 2 312.0 0.0 2.33 1.8 171.8 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000094819 Or13a20 ENSMUST00000211399 ENSMUSP00000148158 TRANSLATION protein_coding stop - 3 95.0 0.0 1.0 0.0 37.7 2.0 -4,-7 0.0018 - -2.0 MINOR ENSMUSG00000096228 Or6z7 ENSMUST00000209866 ENSMUSP00000147586 TRANSLATION protein_coding - CCDS57479.1 5 312.0 0.0 1.0 8.3 167.4 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096228 Or6z7 ENSMUST00000086318 ENSMUSP00000083498 TRANSLATION protein_coding - CCDS57479.1 3 312.0 0.0 1.0 8.3 167.4 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040205 Cuzd1 ENSMUST00000046611 ENSMUSP00000037168 TRANSLATION protein_coding - CCDS40157.1 1 607.0 3.0 3.04 8.5 295.1 0.0 1,-4 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000030838 Ush1c ENSMUST00000129266 - NO_TRANSLATION retained_intron ENSMUSG00000030838 Ush1c ENSMUST00000148527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030838 Ush1c ENSMUST00000176371 ENSMUSP00000134783 TRANSLATION protein_coding - - 5 517.0 0.0 10.53 0.0 141.7 0.0 -4,-7 0.0192 15 10.002 MINOR ENSMUSG00000030838 Ush1c ENSMUST00000078680 ENSMUSP00000077747 TRANSLATION protein_coding - CCDS39963.1 1 548.0 0.0 11.53 11.0 141.7 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000030838 Ush1c ENSMUST00000009667 ENSMUSP00000009667 TRANSLATION protein_coding - CCDS21276.1 1 910.0 0.0 11.53 0.1 141.7 0.0 -4,-5 0.285 15 12.0 MINOR ENSMUSG00000030838 Ush1c ENSMUST00000177212 ENSMUSP00000135734 TRANSLATION protein_coding - - 5 529.0 0.0 11.03 1.0 129.7 0.0 -4,-5 0.0766 14 10.278 MINOR ENSMUSG00000030838 Ush1c ENSMUST00000238793 ENSMUSP00000158923 TRANSLATION protein_coding stop - - 223.0 0.0 3.7 0.0 52.2 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000030838 Ush1c ENSMUST00000143155 ENSMUSP00000119676 TRANSLATION nonsense_mediated_decay - CCDS85309.1 1 859.0 0.0 11.53 0.7 141.7 0.0 -4,-5 0.3692 15 -2.0 MINOR ENSMUSG00000030838 Ush1c ENSMUST00000154292 ENSMUSP00000114494 TRANSLATION protein_coding - CCDS52250.1 1 891.0 0.0 11.53 0.7 141.7 0.0 -4,-5 0.3725 15 12.0 MINOR ENSMUSG00000099898 Scgb1b17 ENSMUST00000187081 ENSMUSP00000139627 TRANSLATION protein_coding - - 5 93.0 0.0 1.63 0.0 75.3 0.0 3,-2 0.8196 - 12.0 PRINCIPAL:1 ENSMUSG00000096859 Vmn1r176 ENSMUST00000228280 ENSMUSP00000153851 TRANSLATION protein_coding - CCDS52136.1 - 304.0 0.0 0.0 0.4 71.6 3.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096859 Vmn1r176 ENSMUST00000226767 ENSMUSP00000153990 TRANSLATION protein_coding - CCDS52136.1 - 304.0 0.0 0.0 0.4 71.6 3.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096859 Vmn1r176 ENSMUST00000227661 ENSMUSP00000154128 TRANSLATION protein_coding - CCDS52136.1 - 304.0 0.0 0.0 0.4 71.6 3.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096859 Vmn1r176 ENSMUST00000226319 ENSMUSP00000154663 TRANSLATION protein_coding - CCDS52136.1 - 304.0 0.0 0.0 0.4 71.6 3.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096859 Vmn1r176 ENSMUST00000227129 ENSMUSP00000153764 TRANSLATION protein_coding - CCDS52136.1 - 304.0 0.0 0.0 0.4 71.6 3.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096859 Vmn1r176 ENSMUST00000171073 ENSMUSP00000132168 TRANSLATION protein_coding - CCDS52136.1 - 304.0 0.0 0.0 0.4 71.6 3.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096859 Vmn1r176 ENSMUST00000228793 ENSMUSP00000153879 TRANSLATION protein_coding - CCDS52136.1 - 304.0 0.0 0.0 0.4 71.6 3.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000037664 Cdkn1c ENSMUST00000208118 - NO_TRANSLATION retained_intron ENSMUSG00000037664 Cdkn1c ENSMUST00000167912 ENSMUSP00000128828 TRANSLATION protein_coding - CCDS52463.1 1 348.0 0.0 0.8 0.3 50.0 0.0 -4,-1 0.4163 4 8.0 ALTERNATIVE:2 ENSMUSG00000037664 Cdkn1c ENSMUST00000207910 ENSMUSP00000147142 TRANSLATION protein_coding start - 3 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037664 Cdkn1c ENSMUST00000208137 ENSMUSP00000147116 TRANSLATION protein_coding start - 2 179.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037664 Cdkn1c ENSMUST00000037287 ENSMUSP00000037302 TRANSLATION protein_coding - CCDS22040.1 1 335.0 0.0 0.8 0.0 50.0 0.0 -4,-7 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000025495 Ptdss2 ENSMUST00000174612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025495 Ptdss2 ENSMUST00000174373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025495 Ptdss2 ENSMUST00000174058 ENSMUSP00000134176 TRANSLATION nonsense_mediated_decay - - 3 80.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000025495 Ptdss2 ENSMUST00000173721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025495 Ptdss2 ENSMUST00000210026 - NO_TRANSLATION retained_intron ENSMUSG00000025495 Ptdss2 ENSMUST00000209928 ENSMUSP00000147593 TRANSLATION protein_coding start - 3 50.0 0.0 0.75 0.0 0.0 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000025495 Ptdss2 ENSMUST00000172787 ENSMUSP00000133352 TRANSLATION protein_coding stop - 3 190.0 0.0 4.83 0.0 185.5 4.0 0,-4 0.0056 2 -2.0 MINOR ENSMUSG00000025495 Ptdss2 ENSMUST00000172479 ENSMUSP00000133804 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.75 0.0 0.0 1.0 0,-4 0.0026 - -2.0 MINOR ENSMUSG00000025495 Ptdss2 ENSMUST00000026568 ENSMUSP00000026568 TRANSLATION protein_coding - CCDS22001.1 1 473.0 0.0 11.21 0.1 369.8 9.0 -4,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000025495 Ptdss2 ENSMUST00000173572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025495 Ptdss2 ENSMUST00000174706 - NO_TRANSLATION retained_intron ENSMUSG00000046924 Vmn1r179 ENSMUST00000049819 ENSMUSP00000055372 TRANSLATION protein_coding - CCDS20936.1 - 323.0 0.0 0.0 0.0 50.6 4.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046924 Vmn1r179 ENSMUST00000236851 ENSMUSP00000157551 TRANSLATION nonsense_mediated_decay - CCDS20936.1 - 323.0 0.0 0.0 0.0 50.6 4.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000044903 Psg22 ENSMUST00000051973 ENSMUSP00000050633 TRANSLATION protein_coding - CCDS20876.1 1 475.0 0.0 3.0 0.4 157.5 0.0 0,-5 0.4449 - 8.0 ALTERNATIVE:2 ENSMUSG00000044903 Psg22 ENSMUST00000108481 ENSMUSP00000104121 TRANSLATION protein_coding - - 1 514.0 0.0 3.0 0.0 157.5 0.0 -4,-5 0.7657 - 8.0 PRINCIPAL:2 ENSMUSG00000044903 Psg22 ENSMUST00000208221 ENSMUSP00000146795 TRANSLATION protein_coding - CCDS20876.1 1 475.0 0.0 3.0 0.4 157.5 0.0 0,-5 0.4449 - 8.0 ALTERNATIVE:2 ENSMUSG00000044265 Olfm5 ENSMUST00000051137 ENSMUSP00000052174 TRANSLATION protein_coding - CCDS21612.1 1 496.0 0.0 2.165 0.0 244.9 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044265 Olfm5 ENSMUST00000154555 ENSMUSP00000117893 TRANSLATION protein_coding stop - 2 304.0 0.0 1.565 0.0 133.5 0.0 3,-2 0.0026 - -2.0 MINOR ENSMUSG00000030638 Sh3gl3 ENSMUST00000180243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030638 Sh3gl3 ENSMUST00000179318 ENSMUSP00000137621 TRANSLATION protein_coding - - 5 312.0 0.0 7.03 8.2 267.1 0.0 -4,-5 0.2093 7 8.26 MINOR ENSMUSG00000030638 Sh3gl3 ENSMUST00000178526 ENSMUSP00000137482 TRANSLATION protein_coding start - 5 132.0 0.0 2.33 0.0 121.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030638 Sh3gl3 ENSMUST00000032874 ENSMUSP00000032874 TRANSLATION protein_coding - - 1 347.0 0.0 8.03 26.4 315.0 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000030638 Sh3gl3 ENSMUST00000179150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030638 Sh3gl3 ENSMUST00000177883 ENSMUSP00000137207 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 1.75 0.0 70.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000030638 Sh3gl3 ENSMUST00000179800 - NO_TRANSLATION retained_intron ENSMUSG00000030638 Sh3gl3 ENSMUST00000177895 ENSMUSP00000137570 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 1.75 0.0 70.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030638 Sh3gl3 ENSMUST00000180183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074115 Saa1 ENSMUST00000128088 ENSMUSP00000119150 TRANSLATION protein_coding - CCDS21284.1 1 122.0 0.0 2.6 9.0 165.4 0.0 4,-1 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000074115 Saa1 ENSMUST00000210547 - NO_TRANSLATION retained_intron ENSMUSG00000046431 Or10a3 ENSMUST00000217803 ENSMUSP00000151883 TRANSLATION protein_coding - CCDS21729.1 5 333.0 0.0 1.0 0.3 201.2 7.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046431 Or10a3 ENSMUST00000059617 ENSMUSP00000050503 TRANSLATION protein_coding - CCDS21729.1 - 333.0 0.0 1.0 0.3 201.2 7.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050917 Fgf4 ENSMUST00000208265 ENSMUSP00000146975 TRANSLATION protein_coding stop - 2 52.0 2.0 1.33 0.0 54.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050917 Fgf4 ENSMUST00000060336 ENSMUSP00000056752 TRANSLATION protein_coding - CCDS22052.1 1 202.0 7.0 3.18 2.6 126.1 0.0 2,-1 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000030545 Pex11a ENSMUST00000032761 ENSMUSP00000032761 TRANSLATION protein_coding - CCDS21386.1 1 246.0 0.0 0.0 17.8 245.7 0.0 -4,-1 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000030545 Pex11a ENSMUST00000139620 - NO_TRANSLATION retained_intron ENSMUSG00000030545 Pex11a ENSMUST00000150606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030545 Pex11a ENSMUST00000205297 - NO_TRANSLATION retained_intron ENSMUSG00000030711 Sult1a1 ENSMUST00000106373 ENSMUSP00000101981 TRANSLATION protein_coding - - 1 298.0 19.0 7.0 0.0 291.8 0.0 -4,-5 0.7537 10 18.0 PRINCIPAL:1 ENSMUSG00000030711 Sult1a1 ENSMUST00000106372 ENSMUSP00000101980 TRANSLATION protein_coding - CCDS40128.1 1 263.0 19.0 6.0 0.0 257.7 0.0 -4,-5 0.0079 8 13.956 MINOR ENSMUSG00000030711 Sult1a1 ENSMUST00000155419 ENSMUSP00000121514 TRANSLATION protein_coding stop - 3 188.0 8.0 4.0 0.0 115.2 0.0 -4,-5 0.0002 4 -2.0 MINOR ENSMUSG00000046456 Tmem150b ENSMUST00000086364 ENSMUSP00000083550 TRANSLATION protein_coding - CCDS20742.1 1 123.0 0.0 3.25 0.0 92.1 3.0 1,-4 0.0357 - 3.42 MINOR ENSMUSG00000046456 Tmem150b ENSMUST00000086363 ENSMUSP00000083549 TRANSLATION protein_coding - CCDS51975.1 1 238.0 0.0 5.25 0.4 168.4 5.0 1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047473 Zfp30 ENSMUST00000122387 ENSMUSP00000113426 TRANSLATION protein_coding - - 1 467.0 51.0 1.0 0.7 230.7 0.0 -4,-7 0.1285 - 13.578 MINOR ENSMUSG00000047473 Zfp30 ENSMUST00000032803 ENSMUSP00000032803 TRANSLATION protein_coding - CCDS21075.1 1 548.0 51.0 1.0 0.1 304.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000047473 Zfp30 ENSMUST00000126504 - NO_TRANSLATION retained_intron ENSMUSG00000035623 Rsf1 ENSMUST00000127891 ENSMUSP00000145905 TRANSLATION nonsense_mediated_decay start - 3 109.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0 1 -2.0 MINOR ENSMUSG00000035623 Rsf1 ENSMUST00000135270 ENSMUSP00000145808 TRANSLATION nonsense_mediated_decay start - 5 121.0 2.0 0.3795 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035623 Rsf1 ENSMUST00000205536 - NO_TRANSLATION retained_intron ENSMUSG00000035623 Rsf1 ENSMUST00000107153 ENSMUSP00000102771 TRANSLATION protein_coding - CCDS40025.1 5 1441.0 7.0 1.1295 0.0 83.1 0.0 -1,-4 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000035623 Rsf1 ENSMUST00000123731 ENSMUSP00000145663 TRANSLATION nonsense_mediated_decay start - 5 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0269 - -2.0 MINOR ENSMUSG00000035623 Rsf1 ENSMUST00000156060 - NO_TRANSLATION retained_intron ENSMUSG00000035623 Rsf1 ENSMUST00000206866 - NO_TRANSLATION retained_intron ENSMUSG00000035623 Rsf1 ENSMUST00000150288 - NO_TRANSLATION retained_intron ENSMUSG00000115021 Vmn1r173 ENSMUST00000174055 ENSMUSP00000134645 TRANSLATION protein_coding - CCDS52134.1 - 313.0 0.0 0.0 0.0 66.0 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115021 Vmn1r173 ENSMUST00000227987 ENSMUSP00000153884 TRANSLATION protein_coding - CCDS52134.1 - 313.0 0.0 0.0 0.0 66.0 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115021 Vmn1r173 ENSMUST00000226233 ENSMUSP00000154603 TRANSLATION protein_coding - CCDS52134.1 - 313.0 0.0 0.0 0.0 66.0 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000073977 Or52b3 ENSMUST00000098227 ENSMUSP00000095829 TRANSLATION protein_coding - CCDS21534.1 - 316.0 0.0 1.0 13.8 349.0 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073977 Or52b3 ENSMUST00000217478 ENSMUSP00000150373 TRANSLATION protein_coding - CCDS21534.1 5 316.0 0.0 1.0 13.8 349.0 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095081 Vmn1r257 ENSMUST00000178871 ENSMUSP00000137197 TRANSLATION protein_coding - CCDS52118.1 - 306.0 0.0 0.0 0.4 57.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000052675 Zfp112 ENSMUST00000206878 - NO_TRANSLATION retained_intron ENSMUSG00000052675 Zfp112 ENSMUST00000215113 ENSMUSP00000150734 TRANSLATION protein_coding - - 5 875.0 51.0 0.6 0.0 290.1 0.0 -4,-5 0.5279 - 14.0 ALTERNATIVE:2 ENSMUSG00000052675 Zfp112 ENSMUST00000005413 ENSMUSP00000005413 TRANSLATION protein_coding - CCDS39824.1 1 879.0 51.0 0.6 0.0 290.1 0.0 -4,-5 0.7077 - 14.0 ALTERNATIVE:2 ENSMUSG00000052675 Zfp112 ENSMUST00000120006 ENSMUSP00000113031 TRANSLATION protein_coding - - 1 873.0 51.0 0.6 0.0 290.1 0.0 -4,-5 0.8799 - 14.0 PRINCIPAL:4 ENSMUSG00000049685 Cyp2g1 ENSMUST00000040944 ENSMUSP00000047150 TRANSLATION protein_coding - CCDS21007.1 1 494.0 47.0 8.8 18.9 495.4 0.0 1,-4 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000049685 Cyp2g1 ENSMUST00000205273 - NO_TRANSLATION retained_intron ENSMUSG00000074254 Cyp2a4 ENSMUST00000098657 ENSMUSP00000096254 TRANSLATION protein_coding - CCDS21002.1 1 494.0 50.0 8.8 15.7 498.5 0.0 1,-3 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000042178 Armc5 ENSMUST00000044660 ENSMUSP00000040568 TRANSLATION protein_coding - CCDS21892.1 1 926.0 0.0 0.95 1.1 20.9 0.0 -1,-4 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000042178 Armc5 ENSMUST00000206509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030867 Plk1 ENSMUST00000206470 ENSMUSP00000145631 TRANSLATION nonsense_mediated_decay - - 5 196.0 18.0 2.0 0.0 116.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000030867 Plk1 ENSMUST00000033154 ENSMUSP00000033154 TRANSLATION protein_coding - CCDS21812.1 1 603.0 19.0 9.75 8.3 374.7 0.0 -4,-6 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000030867 Plk1 ENSMUST00000205901 ENSMUSP00000146253 TRANSLATION protein_coding start/stop - 5 194.0 17.0 2.5 0.0 111.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030685 Kctd13 ENSMUST00000139233 - NO_TRANSLATION retained_intron ENSMUSG00000030685 Kctd13 ENSMUST00000032924 ENSMUSP00000032924 TRANSLATION protein_coding - CCDS21851.1 1 329.0 0.0 5.0 8.9 63.7 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000030685 Kctd13 ENSMUST00000141369 - NO_TRANSLATION retained_intron ENSMUSG00000030779 Rbbp6 ENSMUST00000231323 ENSMUSP00000155989 TRANSLATION protein_coding stop - - 1759.0 13.0 6.148 0.0 159.5 0.0 -4,-5 0.8378 17 -2.0 MINOR ENSMUSG00000030779 Rbbp6 ENSMUST00000137860 - NO_TRANSLATION retained_intron ENSMUSG00000030779 Rbbp6 ENSMUST00000052135 ENSMUSP00000049528 TRANSLATION protein_coding - CCDS52387.1 5 1790.0 13.0 6.148 0.1 159.5 0.0 -4,-5 0.7976 18 14.0 PRINCIPAL:3 ENSMUSG00000030779 Rbbp6 ENSMUST00000148880 ENSMUSP00000115530 TRANSLATION protein_coding stop - 5 79.0 0.0 1.75 0.0 110.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030779 Rbbp6 ENSMUST00000071590 ENSMUSP00000071519 TRANSLATION protein_coding - - 5 1756.0 13.0 6.148 0.1 159.5 0.0 -4,-5 1.0 17 14.0 ALTERNATIVE:2 ENSMUSG00000030779 Rbbp6 ENSMUST00000206179 - NO_TRANSLATION retained_intron ENSMUSG00000030779 Rbbp6 ENSMUST00000098062 ENSMUSP00000095670 TRANSLATION protein_coding - CCDS21817.1 1 123.0 0.0 1.948 0.0 110.4 0.0 -4,-5 0.1129 1 0.666 MINOR ENSMUSG00000030779 Rbbp6 ENSMUST00000205495 ENSMUSP00000145759 TRANSLATION protein_coding start - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0287 - -2.0 MINOR ENSMUSG00000030779 Rbbp6 ENSMUST00000156738 - NO_TRANSLATION retained_intron ENSMUSG00000030779 Rbbp6 ENSMUST00000126053 - NO_TRANSLATION retained_intron ENSMUSG00000066108 Muc5b ENSMUST00000165147 ENSMUSP00000128276 TRANSLATION protein_coding - CCDS52448.1 5 4800.0 0.0 21.1 0.0 1485.3 0.0 3,-2 1.0 71 12.0 PRINCIPAL:1 ENSMUSG00000003438 Timm50 ENSMUST00000081946 ENSMUSP00000080614 TRANSLATION protein_coding - CCDS21039.1 1 353.0 0.0 7.76 7.0 119.1 0.0 -4,0 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000003438 Timm50 ENSMUST00000136427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003438 Timm50 ENSMUST00000151990 - NO_TRANSLATION retained_intron ENSMUSG00000003438 Timm50 ENSMUST00000135220 - NO_TRANSLATION retained_intron ENSMUSG00000003438 Timm50 ENSMUST00000131849 - NO_TRANSLATION retained_intron ENSMUSG00000003438 Timm50 ENSMUST00000134263 - NO_TRANSLATION retained_intron ENSMUSG00000054759 Krtap5-2 ENSMUST00000190456 ENSMUSP00000140784 TRANSLATION protein_coding - CCDS80832.1 - 367.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8896 - 0.0 PRINCIPAL:1 ENSMUSG00000031493 Ggn ENSMUST00000208330 ENSMUSP00000146620 TRANSLATION protein_coding - - 5 686.0 3.0 0.0 0.0 541.0 0.0 -4,-5 0.2334 - 3.0 ALTERNATIVE:2 ENSMUSG00000031493 Ggn ENSMUST00000208288 ENSMUSP00000146665 TRANSLATION nonsense_mediated_decay - - 1 305.0 0.0 0.0 0.0 344.0 0.0 -4,-7 0.0021 - -2.0 MINOR ENSMUSG00000031493 Ggn ENSMUST00000209019 ENSMUSP00000146750 TRANSLATION protein_coding - - 1 673.0 3.0 0.0 0.0 541.0 0.0 -4,-6 0.779 - 3.0 PRINCIPAL:2 ENSMUSG00000031493 Ggn ENSMUST00000033886 ENSMUSP00000033886 TRANSLATION protein_coding - CCDS21067.1 1 137.0 3.0 0.0 0.0 228.6 0.0 -4,-6 0.0428 - 3.0 MINOR ENSMUSG00000031493 Ggn ENSMUST00000098609 ENSMUSP00000096209 TRANSLATION protein_coding - CCDS52168.1 1 709.0 3.0 0.0 0.0 541.0 0.0 -4,-7 0.353 - 3.0 ALTERNATIVE:2 ENSMUSG00000060441 Trim5 ENSMUST00000098179 ENSMUSP00000095781 TRANSLATION protein_coding - CCDS80770.1 1 497.0 16.0 3.724 0.3 117.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030617 Ccdc83 ENSMUST00000207819 - NO_TRANSLATION retained_intron ENSMUSG00000030617 Ccdc83 ENSMUST00000040413 ENSMUSP00000047758 TRANSLATION protein_coding - CCDS21446.1 1 305.0 0.0 1.225 0.0 0.0 0.0 -4,-5 0.1116 - 4.26 MINOR ENSMUSG00000030617 Ccdc83 ENSMUST00000107220 ENSMUSP00000102838 TRANSLATION protein_coding - - 2 250.0 0.0 1.225 0.0 0.0 0.0 -4,-5 0.0138 - 4.26 MINOR ENSMUSG00000030617 Ccdc83 ENSMUST00000107221 ENSMUSP00000102839 TRANSLATION protein_coding - CCDS57561.1 1 408.0 0.0 1.725 2.0 0.0 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000031073 Fgf15 ENSMUST00000207040 - NO_TRANSLATION retained_intron ENSMUSG00000031073 Fgf15 ENSMUST00000033389 ENSMUSP00000033389 TRANSLATION protein_coding - CCDS22053.1 1 218.0 0.0 2.6 0.4 72.0 0.0 3,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031073 Fgf15 ENSMUST00000207033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031073 Fgf15 ENSMUST00000207229 ENSMUSP00000146870 TRANSLATION protein_coding stop - 3 161.0 0.0 1.66 0.0 43.1 0.0 3,-4 0.0015 - -2.0 MINOR ENSMUSG00000031073 Fgf15 ENSMUST00000208515 - NO_TRANSLATION retained_intron ENSMUSG00000007279 Scube2 ENSMUST00000106729 ENSMUSP00000102340 TRANSLATION protein_coding - CCDS21740.2 1 968.0 41.0 9.705 2.5 474.6 0.0 3,-2 1.0 4 14.4 PRINCIPAL:1 ENSMUSG00000007279 Scube2 ENSMUST00000138946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007279 Scube2 ENSMUST00000106728 ENSMUSP00000102339 TRANSLATION protein_coding - - 5 805.0 41.0 8.705 1.0 465.8 0.0 3,-2 0.1618 3 11.402 MINOR ENSMUSG00000007279 Scube2 ENSMUST00000007423 ENSMUSP00000007423 TRANSLATION protein_coding - - 2 997.0 41.0 8.705 1.3 532.9 0.0 3,-2 0.3939 4 12.202 MINOR ENSMUSG00000007279 Scube2 ENSMUST00000132113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048528 Nkx1-2 ENSMUST00000054562 ENSMUSP00000052778 TRANSLATION protein_coding - CCDS21924.1 1 305.0 0.0 0.5 1.3 74.0 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000063229 Ldha ENSMUST00000210198 - NO_TRANSLATION retained_intron ENSMUSG00000063229 Ldha ENSMUST00000210467 ENSMUSP00000147988 TRANSLATION protein_coding stop - 3 128.0 15.0 3.66 0.0 121.0 2.0 -4,-5 0.0015 10 -2.0 MINOR ENSMUSG00000063229 Ldha ENSMUST00000209548 ENSMUSP00000147293 TRANSLATION nonsense_mediated_decay - - 1 201.0 23.0 5.91 0.0 171.5 2.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000063229 Ldha ENSMUST00000048209 ENSMUSP00000036386 TRANSLATION protein_coding - CCDS21289.1 1 332.0 26.0 9.24 30.9 256.1 2.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000063229 Ldha ENSMUST00000209984 ENSMUSP00000148107 TRANSLATION protein_coding - CCDS52255.1 1 361.0 26.0 9.24 0.0 256.1 2.0 -4,-7 0.1106 23 18.0 MINOR ENSMUSG00000063229 Ldha ENSMUST00000133062 ENSMUSP00000147640 TRANSLATION protein_coding stop - 2 68.0 8.0 1.83 0.0 50.4 2.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000063229 Ldha ENSMUST00000210815 ENSMUSP00000148046 TRANSLATION protein_coding - - 5 315.0 23.0 8.74 0.0 206.2 2.0 -4,-5 0.01 19 12.006 MINOR ENSMUSG00000063229 Ldha ENSMUST00000210968 ENSMUSP00000147697 TRANSLATION protein_coding stop - 5 104.0 8.0 2.83 0.0 59.4 2.0 -4,-5 0.0015 9 -2.0 MINOR ENSMUSG00000063229 Ldha ENSMUST00000092621 ENSMUSP00000097661 TRANSLATION protein_coding stop - 5 236.0 23.0 7.24 0.0 171.5 2.0 -4,-5 0.0005 15 -2.0 MINOR ENSMUSG00000063229 Ldha ENSMUST00000005051 ENSMUSP00000103267 TRANSLATION protein_coding - CCDS21289.1 1 332.0 26.0 9.24 30.9 256.1 2.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000063229 Ldha ENSMUST00000125862 ENSMUSP00000147460 TRANSLATION protein_coding stop - 2 66.0 8.0 1.83 0.0 46.0 2.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000063229 Ldha ENSMUST00000124696 - NO_TRANSLATION retained_intron ENSMUSG00000063229 Ldha ENSMUST00000147535 ENSMUSP00000123356 TRANSLATION protein_coding stop - 3 236.0 23.0 7.24 0.0 171.5 2.0 -4,-5 0.0005 15 -2.0 MINOR ENSMUSG00000063229 Ldha ENSMUST00000132157 ENSMUSP00000148190 TRANSLATION protein_coding stop - 2 176.0 20.0 5.16 0.0 171.5 2.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000063229 Ldha ENSMUST00000210631 ENSMUSP00000147825 TRANSLATION protein_coding - - 5 205.0 15.0 2.346 0.0 58.3 2.0 -4,-5 0.0015 9 0.0 MINOR ENSMUSG00000073946 Or52z12 ENSMUST00000215755 ENSMUSP00000150982 TRANSLATION protein_coding - CCDS21579.1 5 318.0 0.0 1.0 5.3 361.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073946 Or52z12 ENSMUST00000216516 ENSMUSP00000149045 TRANSLATION protein_coding - CCDS21579.1 5 318.0 0.0 1.0 5.3 361.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073946 Or52z12 ENSMUST00000048265 ENSMUSP00000040319 TRANSLATION protein_coding - CCDS21579.1 - 318.0 0.0 1.0 5.3 361.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000001773 Folh1 ENSMUST00000209082 - NO_TRANSLATION retained_intron ENSMUSG00000001773 Folh1 ENSMUST00000107271 ENSMUSP00000102892 TRANSLATION protein_coding - CCDS52300.1 1 719.0 11.0 15.55 1.0 220.1 1.0 -4,-7 0.1917 15 16.002 MINOR ENSMUSG00000001773 Folh1 ENSMUST00000001824 ENSMUSP00000001824 TRANSLATION protein_coding - CCDS21436.1 1 752.0 11.0 16.55 13.8 220.1 1.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000032743 Katnip ENSMUST00000132204 ENSMUSP00000115955 TRANSLATION protein_coding start/stop - 5 219.0 0.0 0.0 0.0 162.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032743 Katnip ENSMUST00000122337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032743 Katnip ENSMUST00000155059 - NO_TRANSLATION retained_intron ENSMUSG00000032743 Katnip ENSMUST00000148701 ENSMUSP00000119527 TRANSLATION protein_coding stop - 5 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032743 Katnip ENSMUST00000124223 ENSMUSP00000118668 TRANSLATION protein_coding - - 1 1584.0 0.0 0.0 0.1 620.1 0.0 -4,-5 0.9384 10 2.0 PRINCIPAL:4 ENSMUSG00000032743 Katnip ENSMUST00000205462 - NO_TRANSLATION retained_intron ENSMUSG00000032743 Katnip ENSMUST00000069660 ENSMUSP00000065744 TRANSLATION protein_coding - CCDS40123.1 1 1610.0 0.0 0.0 0.3 620.1 0.0 -4,-6 0.7889 10 2.0 ALTERNATIVE:2 ENSMUSG00000032743 Katnip ENSMUST00000205723 - NO_TRANSLATION retained_intron ENSMUSG00000096151 Or5p56 ENSMUST00000091605 ENSMUSP00000091654 TRANSLATION protein_coding - CCDS21699.1 - 310.0 0.0 1.0 11.0 172.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096151 Or5p56 ENSMUST00000214677 ENSMUSP00000150605 TRANSLATION protein_coding - CCDS21699.1 5 310.0 0.0 1.0 11.0 172.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096071 Vmn1r143 ENSMUST00000171622 ENSMUSP00000127638 TRANSLATION protein_coding - CCDS52110.1 - 307.0 0.0 0.0 0.4 55.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068959 Zfp619 ENSMUST00000108015 ENSMUSP00000103650 TRANSLATION protein_coding - CCDS39918.1 1 1161.0 132.0 0.6 0.1 520.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078754 Scgb2b3 ENSMUST00000108090 ENSMUSP00000103725 TRANSLATION protein_coding - CCDS57534.1 1 112.0 0.0 1.8 0.1 102.4 0.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030787 Lyve1 ENSMUST00000209319 - NO_TRANSLATION retained_intron ENSMUSG00000030787 Lyve1 ENSMUST00000033050 ENSMUSP00000033050 TRANSLATION protein_coding - CCDS21748.1 1 318.0 0.0 1.44 7.1 69.2 0.0 3,-1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000030968 Pdilt ENSMUST00000033267 ENSMUSP00000033267 TRANSLATION protein_coding - CCDS52378.1 1 588.0 0.0 9.866 0.3 166.0 0.0 2,-2 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000030968 Pdilt ENSMUST00000208275 ENSMUSP00000146664 TRANSLATION nonsense_mediated_decay start - 3 102.0 0.0 2.0 0.0 48.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000069727 Zfp975 ENSMUST00000107992 ENSMUSP00000103626 TRANSLATION protein_coding - CCDS39926.1 1 525.0 56.0 1.0 0.3 333.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000069727 Zfp975 ENSMUST00000206356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063511 Snrnp70 ENSMUST00000210374 - NO_TRANSLATION retained_intron ENSMUSG00000063511 Snrnp70 ENSMUST00000210970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063511 Snrnp70 ENSMUST00000210661 - NO_TRANSLATION retained_intron ENSMUSG00000063511 Snrnp70 ENSMUST00000211178 - NO_TRANSLATION retained_intron ENSMUSG00000063511 Snrnp70 ENSMUST00000210495 - NO_TRANSLATION retained_intron ENSMUSG00000063511 Snrnp70 ENSMUST00000210808 - NO_TRANSLATION retained_intron ENSMUSG00000063511 Snrnp70 ENSMUST00000209858 ENSMUSP00000147636 TRANSLATION protein_coding stop - 5 168.0 0.0 4.764 0.0 151.5 0.0 -4,-6 0.0009 7 -2.0 MINOR ENSMUSG00000063511 Snrnp70 ENSMUST00000209993 ENSMUSP00000147368 TRANSLATION nonsense_mediated_decay start - 3 116.0 0.0 3.665 0.0 83.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000063511 Snrnp70 ENSMUST00000209237 - NO_TRANSLATION retained_intron ENSMUSG00000063511 Snrnp70 ENSMUST00000210514 ENSMUSP00000147375 TRANSLATION protein_coding start - 3 86.0 0.0 2.25 0.0 35.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000063511 Snrnp70 ENSMUST00000211121 ENSMUSP00000147400 TRANSLATION protein_coding stop - 3 109.0 0.0 3.0 0.0 102.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000063511 Snrnp70 ENSMUST00000210583 - NO_TRANSLATION retained_intron ENSMUSG00000063511 Snrnp70 ENSMUST00000074575 ENSMUSP00000074160 TRANSLATION protein_coding - CCDS21240.1 1 448.0 0.0 6.2 0.0 166.5 0.0 -4,-6 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000063511 Snrnp70 ENSMUST00000211211 ENSMUSP00000148112 TRANSLATION protein_coding start - 3 84.0 0.0 2.316 0.0 35.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000063511 Snrnp70 ENSMUST00000211378 ENSMUSP00000147682 TRANSLATION nonsense_mediated_decay - - 5 111.0 0.0 2.25 0.0 88.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000063511 Snrnp70 ENSMUST00000211290 - NO_TRANSLATION retained_intron ENSMUSG00000063511 Snrnp70 ENSMUST00000211366 - NO_TRANSLATION retained_intron ENSMUSG00000035545 Leng8 ENSMUST00000144248 ENSMUSP00000120574 TRANSLATION protein_coding stop - 2 131.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035545 Leng8 ENSMUST00000146434 - NO_TRANSLATION retained_intron ENSMUSG00000035545 Leng8 ENSMUST00000037472 ENSMUSP00000046465 TRANSLATION protein_coding - CCDS20731.1 1 785.0 0.0 3.75 0.0 74.8 0.0 -4,-5 0.1854 10 9.042 MINOR ENSMUSG00000035545 Leng8 ENSMUST00000117274 ENSMUSP00000113223 TRANSLATION protein_coding - - 1 126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000035545 Leng8 ENSMUST00000128756 ENSMUSP00000118832 TRANSLATION protein_coding stop - 2 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035545 Leng8 ENSMUST00000155881 - NO_TRANSLATION retained_intron ENSMUSG00000035545 Leng8 ENSMUST00000121270 ENSMUSP00000112428 TRANSLATION protein_coding - - 5 801.0 0.0 4.75 0.0 89.0 0.0 -4,-5 0.7877 10 12.0 PRINCIPAL:1 ENSMUSG00000035545 Leng8 ENSMUST00000127723 - NO_TRANSLATION retained_intron ENSMUSG00000035545 Leng8 ENSMUST00000132086 ENSMUSP00000121129 TRANSLATION protein_coding stop - 3 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035545 Leng8 ENSMUST00000154571 ENSMUSP00000123328 TRANSLATION protein_coding stop - 5 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042462 Dctpp1 ENSMUST00000035276 ENSMUSP00000047845 TRANSLATION protein_coding - CCDS21862.1 1 170.0 4.0 2.8 6.4 0.0 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000040488 Ltbp4 ENSMUST00000121175 ENSMUSP00000113674 TRANSLATION protein_coding - CCDS52158.1 1 1600.0 104.0 13.40875 0.0 727.8 0.0 4,-1 0.623 36 14.0 ALTERNATIVE:2 ENSMUSG00000040488 Ltbp4 ENSMUST00000125455 ENSMUSP00000120326 TRANSLATION protein_coding start/stop - 3 228.0 0.0 1.375 0.0 106.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040488 Ltbp4 ENSMUST00000129471 - NO_TRANSLATION retained_intron ENSMUSG00000040488 Ltbp4 ENSMUST00000038618 ENSMUSP00000037536 TRANSLATION protein_coding - CCDS21017.1 1 1666.0 104.0 13.40875 0.0 727.8 0.0 3,-2 1.0 35 14.0 PRINCIPAL:2 ENSMUSG00000040488 Ltbp4 ENSMUST00000118583 ENSMUSP00000113523 TRANSLATION protein_coding - - 1 1558.0 99.0 13.20875 0.0 693.6 0.0 4,-1 0.3075 36 9.662 MINOR ENSMUSG00000040488 Ltbp4 ENSMUST00000148594 - NO_TRANSLATION retained_intron ENSMUSG00000040488 Ltbp4 ENSMUST00000134464 - NO_TRANSLATION retained_intron ENSMUSG00000040488 Ltbp4 ENSMUST00000206413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006311 Etv2 ENSMUST00000108147 ENSMUSP00000103782 TRANSLATION protein_coding - CCDS39888.1 1 335.0 0.0 2.0 0.1 108.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030866 Ern2 ENSMUST00000206198 ENSMUSP00000145716 TRANSLATION nonsense_mediated_decay - - 1 819.0 18.0 10.364 0.0 129.1 0.0 0,-3 0.0089 6 -2.0 MINOR ENSMUSG00000030866 Ern2 ENSMUST00000033153 ENSMUSP00000033153 TRANSLATION protein_coding - CCDS21813.1 1 911.0 18.0 12.114 0.0 264.9 0.0 0,-3 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000073922 Or52n20 ENSMUST00000098170 ENSMUSP00000095772 TRANSLATION protein_coding - CCDS21625.1 - 322.0 0.0 1.0 14.5 329.6 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073922 Or52n20 ENSMUST00000214986 ENSMUSP00000149939 TRANSLATION protein_coding - CCDS21625.1 5 322.0 0.0 1.0 14.5 329.6 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000053046 Brsk2 ENSMUST00000173285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053046 Brsk2 ENSMUST00000173924 ENSMUSP00000134153 TRANSLATION nonsense_mediated_decay start - 5 504.0 4.0 7.82 0.0 99.9 1.0 -4,-5 0.0003 10 -2.0 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000078200 ENSMUSP00000077330 TRANSLATION protein_coding - CCDS22023.1 1 675.0 18.0 12.57 2.4 242.0 1.0 -4,-5 0.304 13 14.356 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000173313 ENSMUSP00000133868 TRANSLATION protein_coding start - 5 200.0 0.0 2.26 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000172652 ENSMUSP00000133438 TRANSLATION protein_coding - - 5 697.0 18.0 12.57 3.6 242.0 1.0 -4,-5 0.2735 13 14.664 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000018971 ENSMUSP00000018971 TRANSLATION protein_coding - CCDS22021.1 1 653.0 18.0 12.57 5.6 242.0 1.0 -4,-5 0.4003 14 15.172 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000075528 ENSMUSP00000074969 TRANSLATION protein_coding - CCDS22022.1 1 719.0 18.0 12.57 16.7 242.0 1.0 -4,-5 1.0 15 18.0 ALTERNATIVE:1 ENSMUSG00000053046 Brsk2 ENSMUST00000210065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053046 Brsk2 ENSMUST00000172967 ENSMUSP00000133750 TRANSLATION nonsense_mediated_decay start - 5 614.0 12.0 10.64 0.0 225.6 1.0 -4,-5 0.0075 11 -2.0 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000173941 ENSMUSP00000133296 TRANSLATION protein_coding start - 3 47.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000174405 ENSMUSP00000134289 TRANSLATION nonsense_mediated_decay - - 1 92.0 9.0 2.75 0.0 51.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000173330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053046 Brsk2 ENSMUST00000105989 ENSMUSP00000101610 TRANSLATION protein_coding - CCDS22023.1 5 675.0 18.0 12.57 2.4 242.0 1.0 -4,-5 0.304 13 14.356 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000174237 ENSMUSP00000134566 TRANSLATION protein_coding start/stop - 3 232.0 0.0 2.26 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000174499 ENSMUSP00000134201 TRANSLATION protein_coding - - 5 735.0 18.0 12.57 12.7 242.0 1.0 -4,-5 0.8189 17 16.98 PRINCIPAL:3 ENSMUSG00000053046 Brsk2 ENSMUST00000173705 ENSMUSP00000134170 TRANSLATION nonsense_mediated_decay start - 5 113.0 1.0 3.33 0.0 80.8 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000053046 Brsk2 ENSMUST00000174309 ENSMUSP00000134310 TRANSLATION nonsense_mediated_decay start - 5 486.0 0.0 7.24 0.0 42.8 1.0 -3,-5 0.0 12 -2.0 MINOR ENSMUSG00000074158 Zfp976 ENSMUST00000107994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074158 Zfp976 ENSMUST00000098503 ENSMUSP00000096105 TRANSLATION protein_coding - CCDS57543.1 2 636.0 72.0 1.0 0.1 359.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000074158 Zfp976 ENSMUST00000187616 ENSMUSP00000141023 TRANSLATION protein_coding start - 5 635.0 72.0 1.0 0.1 359.2 0.0 -4,-5 0.6502 - -2.0 MINOR ENSMUSG00000018909 Arrb1 ENSMUST00000179755 ENSMUSP00000136963 TRANSLATION protein_coding - - 5 419.0 15.0 10.15034 22.4 234.3 0.0 -4,-5 0.8407 13 17.1 ALTERNATIVE:1 ENSMUSG00000018909 Arrb1 ENSMUST00000162404 ENSMUSP00000124351 TRANSLATION protein_coding stop - 3 118.0 5.0 3.41 0.0 65.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000018909 Arrb1 ENSMUST00000098266 ENSMUSP00000095866 TRANSLATION protein_coding - CCDS40032.1 1 418.0 15.0 10.415 24.6 233.3 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:4 ENSMUSG00000018909 Arrb1 ENSMUST00000162290 ENSMUSP00000125056 TRANSLATION protein_coding start - 2 121.0 4.0 2.125 0.0 30.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000018909 Arrb1 ENSMUST00000162933 - NO_TRANSLATION retained_intron ENSMUSG00000018909 Arrb1 ENSMUST00000162043 - NO_TRANSLATION retained_intron ENSMUSG00000018909 Arrb1 ENSMUST00000161268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018909 Arrb1 ENSMUST00000159642 - NO_TRANSLATION retained_intron ENSMUSG00000018909 Arrb1 ENSMUST00000032995 ENSMUSP00000032995 TRANSLATION protein_coding - CCDS21484.1 1 410.0 15.0 10.085 21.6 236.9 0.0 -4,-5 0.9922 13 16.832 MINOR ENSMUSG00000018909 Arrb1 ENSMUST00000161525 ENSMUSP00000124483 TRANSLATION protein_coding stop - 2 135.0 5.0 2.58 0.0 62.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000046130 Vmn1r184 ENSMUST00000228369 ENSMUSP00000154576 TRANSLATION protein_coding - CCDS52155.1 - 314.0 0.0 0.0 0.0 101.6 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046130 Vmn1r184 ENSMUST00000228145 ENSMUSP00000153921 TRANSLATION protein_coding - CCDS52155.1 - 314.0 0.0 0.0 0.0 101.6 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046130 Vmn1r184 ENSMUST00000227534 ENSMUSP00000154770 TRANSLATION protein_coding - CCDS52155.1 - 314.0 0.0 0.0 0.0 101.6 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046130 Vmn1r184 ENSMUST00000227230 ENSMUSP00000153841 TRANSLATION protein_coding - CCDS52155.1 - 314.0 0.0 0.0 0.0 101.6 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046130 Vmn1r184 ENSMUST00000057123 ENSMUSP00000061885 TRANSLATION protein_coding - CCDS52155.1 - 314.0 0.0 0.0 0.0 101.6 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046130 Vmn1r184 ENSMUST00000227232 ENSMUSP00000154644 TRANSLATION protein_coding - CCDS52155.1 - 314.0 0.0 0.0 0.0 101.6 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046130 Vmn1r184 ENSMUST00000227790 ENSMUSP00000154218 TRANSLATION protein_coding - CCDS52155.1 - 314.0 0.0 0.0 0.0 101.6 5.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000109631 Or5p69 ENSMUST00000210291 ENSMUSP00000147830 TRANSLATION protein_coding - CCDS21713.1 - 314.0 0.0 1.0 10.4 187.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109631 Or5p69 ENSMUST00000209743 ENSMUSP00000148063 TRANSLATION protein_coding - CCDS21713.1 3 314.0 0.0 1.0 10.4 187.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052997 Uba2 ENSMUST00000134856 ENSMUSP00000135841 TRANSLATION nonsense_mediated_decay start - 5 132.0 11.0 4.0 0.0 85.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000052997 Uba2 ENSMUST00000124824 - NO_TRANSLATION retained_intron ENSMUSG00000052997 Uba2 ENSMUST00000156253 ENSMUSP00000116605 TRANSLATION protein_coding stop - 3 119.0 16.0 3.15 0.0 116.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000052997 Uba2 ENSMUST00000175991 ENSMUSP00000135885 TRANSLATION nonsense_mediated_decay start - 3 148.0 2.0 3.75 0.0 45.8 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000052997 Uba2 ENSMUST00000206651 - NO_TRANSLATION retained_intron ENSMUSG00000052997 Uba2 ENSMUST00000205711 - NO_TRANSLATION retained_intron ENSMUSG00000052997 Uba2 ENSMUST00000102746 ENSMUSP00000099807 TRANSLATION protein_coding - CCDS21136.1 1 638.0 24.0 15.35 15.6 425.9 0.0 -4,-7 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000052997 Uba2 ENSMUST00000152037 ENSMUSP00000135078 TRANSLATION protein_coding start - 1 69.0 0.0 1.35 0.0 40.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000052997 Uba2 ENSMUST00000139916 - NO_TRANSLATION retained_intron ENSMUSG00000052997 Uba2 ENSMUST00000142763 - NO_TRANSLATION retained_intron ENSMUSG00000054381 Zfp747 ENSMUST00000067425 ENSMUSP00000070685 TRANSLATION protein_coding - CCDS40142.1 1 422.0 36.0 0.8 0.0 260.4 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000054381 Zfp747 ENSMUST00000206942 - NO_TRANSLATION retained_intron ENSMUSG00000054381 Zfp747 ENSMUST00000205832 ENSMUSP00000145805 TRANSLATION protein_coding - - 3 89.0 0.0 0.0 0.0 27.3 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000005610 Eif4g2 ENSMUST00000161079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005610 Eif4g2 ENSMUST00000160966 ENSMUSP00000125301 TRANSLATION protein_coding start/stop - 2 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 ALTERNATIVE:2 ENSMUSG00000005610 Eif4g2 ENSMUST00000162415 ENSMUSP00000124551 TRANSLATION protein_coding start CCDS40088.1 1 906.0 0.0 11.43 0.1 325.9 0.0 -4,-5 0.3634 33 -2.0 PRINCIPAL:3 ENSMUSG00000005610 Eif4g2 ENSMUST00000159305 ENSMUSP00000125098 TRANSLATION protein_coding start/stop - 3 102.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 ALTERNATIVE:2 ENSMUSG00000005610 Eif4g2 ENSMUST00000161682 - NO_TRANSLATION retained_intron ENSMUSG00000005610 Eif4g2 ENSMUST00000163014 ENSMUSP00000123811 TRANSLATION protein_coding start - 2 158.0 0.0 1.5 0.0 45.2 0.0 -4,-5 0.0 1 -2.0 ALTERNATIVE:2 ENSMUSG00000005610 Eif4g2 ENSMUST00000161790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005610 Eif4g2 ENSMUST00000160552 - NO_TRANSLATION retained_intron ENSMUSG00000005610 Eif4g2 ENSMUST00000160132 ENSMUSP00000124914 TRANSLATION protein_coding start/stop - 5 161.0 0.0 2.1 0.0 64.7 0.0 -4,-5 0.0 5 -2.0 ALTERNATIVE:2 ENSMUSG00000005610 Eif4g2 ENSMUST00000162394 - NO_TRANSLATION retained_intron ENSMUSG00000005610 Eif4g2 ENSMUST00000161158 - NO_TRANSLATION retained_intron ENSMUSG00000005610 Eif4g2 ENSMUST00000161051 ENSMUSP00000125375 TRANSLATION protein_coding start CCDS40087.1 1 868.0 0.0 11.43 0.0 325.9 0.0 -4,-5 1.0 31 -2.0 ALTERNATIVE:2 ENSMUSG00000005610 Eif4g2 ENSMUST00000161736 - NO_TRANSLATION retained_intron ENSMUSG00000005610 Eif4g2 ENSMUST00000159465 - NO_TRANSLATION retained_intron ENSMUSG00000057997 Or13a26 ENSMUST00000209857 ENSMUSP00000147660 TRANSLATION protein_coding stop - 3 128.0 0.0 1.0 0.0 61.9 6.0 -4,-7 0.0043 - -2.0 MINOR ENSMUSG00000057997 Or13a26 ENSMUST00000210357 ENSMUSP00000148238 TRANSLATION protein_coding - CCDS21984.1 2 312.0 0.0 2.0 2.6 166.8 10.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057997 Or13a26 ENSMUST00000080681 ENSMUSP00000079508 TRANSLATION protein_coding - CCDS21984.1 - 312.0 0.0 2.0 2.6 166.8 10.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000070366 Plpp4 ENSMUST00000094018 ENSMUSP00000091557 TRANSLATION protein_coding - CCDS40154.1 1 271.0 4.0 6.91 15.7 96.9 7.0 -3,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000070366 Plpp4 ENSMUST00000205630 ENSMUSP00000145851 TRANSLATION nonsense_mediated_decay - - 1 118.0 0.0 3.25 0.0 0.0 4.0 -3,-5 0.0038 2 -2.0 MINOR ENSMUSG00000070366 Plpp4 ENSMUST00000205896 ENSMUSP00000145944 TRANSLATION protein_coding - - 5 156.0 0.0 3.25 0.0 0.0 4.0 -3,-5 0.0038 2 0.0 MINOR ENSMUSG00000070366 Plpp4 ENSMUST00000206551 - NO_TRANSLATION retained_intron ENSMUSG00000070366 Plpp4 ENSMUST00000206918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004508 Gab2 ENSMUST00000004622 ENSMUSP00000004622 TRANSLATION protein_coding - CCDS21455.1 1 666.0 11.0 0.76 0.1 75.1 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:4 ENSMUSG00000004508 Gab2 ENSMUST00000206791 ENSMUSP00000146200 TRANSLATION protein_coding - CCDS85340.1 1 665.0 11.0 0.76 0.1 75.1 0.0 -4,-5 0.9379 9 14.0 ALTERNATIVE:2 ENSMUSG00000030699 Tbx6 ENSMUST00000094037 ENSMUSP00000091579 TRANSLATION protein_coding - CCDS21843.1 1 436.0 0.0 3.25 11.0 261.1 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030699 Tbx6 ENSMUST00000172352 ENSMUSP00000126418 TRANSLATION protein_coding - - 1 437.0 0.0 3.25 0.0 261.1 0.0 -4,-6 0.2523 - 12.0 MINOR ENSMUSG00000094119 Or51aa2 ENSMUST00000104879 ENSMUSP00000100473 TRANSLATION protein_coding - CCDS52337.1 - 323.0 0.0 1.0 4.8 364.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094119 Or51aa2 ENSMUST00000214269 ENSMUSP00000149996 TRANSLATION protein_coding - CCDS52337.1 5 323.0 0.0 1.0 4.8 364.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094119 Or51aa2 ENSMUST00000215663 ENSMUSP00000150524 TRANSLATION protein_coding - CCDS52337.1 5 323.0 0.0 1.0 4.8 364.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059263 Usp47 ENSMUST00000210591 - NO_TRANSLATION retained_intron ENSMUSG00000059263 Usp47 ENSMUST00000210309 ENSMUSP00000147619 TRANSLATION protein_coding - CCDS85384.1 1 1376.0 4.0 6.357 17.8 177.1 0.0 -4,-5 1.0 26 13.4 PRINCIPAL:4 ENSMUSG00000059263 Usp47 ENSMUST00000215510 ENSMUSP00000151051 TRANSLATION protein_coding - - 5 1376.0 4.0 6.657 0.1 177.0 0.0 -4,-5 0.3785 26 10.0 MINOR ENSMUSG00000059263 Usp47 ENSMUST00000210526 - NO_TRANSLATION retained_intron ENSMUSG00000059263 Usp47 ENSMUST00000106653 ENSMUSP00000102264 TRANSLATION protein_coding - CCDS40089.1 5 1356.0 4.0 6.357 17.3 177.1 0.0 -4,-5 0.9903 26 13.28 ALTERNATIVE:1 ENSMUSG00000059263 Usp47 ENSMUST00000211791 - NO_TRANSLATION retained_intron ENSMUSG00000030839 Sergef ENSMUST00000135035 ENSMUSP00000116461 TRANSLATION protein_coding stop - 3 198.0 0.0 2.2 0.0 67.6 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000030839 Sergef ENSMUST00000137988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030839 Sergef ENSMUST00000156147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030839 Sergef ENSMUST00000125825 - NO_TRANSLATION retained_intron ENSMUSG00000030839 Sergef ENSMUST00000033127 ENSMUSP00000033127 TRANSLATION protein_coding - CCDS21279.1 1 464.0 0.0 5.96 0.0 207.6 0.0 -3,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000030839 Sergef ENSMUST00000216505 ENSMUSP00000150835 TRANSLATION nonsense_mediated_decay - - 5 389.0 0.0 5.76 0.0 173.3 0.0 -3,-6 0.0594 5 -2.0 MINOR ENSMUSG00000041117 Ccdc8 ENSMUST00000094805 ENSMUSP00000092399 TRANSLATION protein_coding - CCDS52044.1 - 685.0 0.0 0.0 0.0 59.1 0.0 -4,-5 0.0585 6 3.822 MINOR ENSMUSG00000041117 Ccdc8 ENSMUST00000247846 ENSMUSP00000159532 TRANSLATION protein_coding - - - 755.0 0.0 0.2 0.0 92.8 0.0 -4,-7 0.8384 6 12.0 PRINCIPAL:1 ENSMUSG00000053877 Srcap ENSMUST00000190390 ENSMUSP00000139399 TRANSLATION protein_coding - - 5 3210.0 3.0 10.8 0.0 371.2 0.0 -4,-6 1.0 20 11.0 PRINCIPAL:4 ENSMUSG00000053877 Srcap ENSMUST00000189136 ENSMUSP00000141098 TRANSLATION protein_coding - - 1 225.0 0.0 0.0 0.0 72.3 0.0 -4,-6 0.0 - 1.0 MINOR ENSMUSG00000053877 Srcap ENSMUST00000066582 ENSMUSP00000063817 TRANSLATION protein_coding - - 1 936.0 3.0 5.8 0.0 304.7 0.0 -4,-6 0.0089 8 4.0 MINOR ENSMUSG00000053877 Srcap ENSMUST00000186759 - NO_TRANSLATION retained_intron ENSMUSG00000053877 Srcap ENSMUST00000185401 - NO_TRANSLATION retained_intron ENSMUSG00000053877 Srcap ENSMUST00000187442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053877 Srcap ENSMUST00000187040 ENSMUSP00000140036 TRANSLATION protein_coding - CCDS80806.1 5 3271.0 3.0 10.8 0.0 371.2 0.0 -4,-6 0.8002 20 11.0 ALTERNATIVE:2 ENSMUSG00000053877 Srcap ENSMUST00000187164 - NO_TRANSLATION retained_intron ENSMUSG00000053877 Srcap ENSMUST00000186672 ENSMUSP00000140395 TRANSLATION protein_coding stop - 5 1192.0 3.0 6.8 0.0 304.7 0.0 -4,-6 0.0136 9 -2.0 MINOR ENSMUSG00000053877 Srcap ENSMUST00000189449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053877 Srcap ENSMUST00000186954 ENSMUSP00000139536 TRANSLATION protein_coding - - 5 3114.0 3.0 10.8 0.0 371.2 0.0 -4,-6 0.4798 20 11.0 ALTERNATIVE:2 ENSMUSG00000053877 Srcap ENSMUST00000189812 - NO_TRANSLATION retained_intron ENSMUSG00000053877 Srcap ENSMUST00000188124 ENSMUSP00000140882 TRANSLATION protein_coding - - 1 445.0 0.0 0.0 0.0 72.3 0.0 -4,-6 0.0023 2 1.0 MINOR ENSMUSG00000070568 Slc6a21 ENSMUST00000210207 ENSMUSP00000147902 TRANSLATION protein_coding start - 1 322.0 0.0 4.64 0.0 149.1 8.0 -4,-7 0.0086 - -2.0 MINOR ENSMUSG00000070568 Slc6a21 ENSMUST00000210861 ENSMUSP00000147890 TRANSLATION protein_coding - - 5 748.0 0.0 9.1 0.0 339.5 15.0 -4,-5 0.8127 1 12.0 PRINCIPAL:1 ENSMUSG00000070568 Slc6a21 ENSMUST00000210733 - NO_TRANSLATION retained_intron ENSMUSG00000070568 Slc6a21 ENSMUST00000085364 ENSMUSP00000082476 TRANSLATION protein_coding - CCDS21238.1 1 423.0 0.0 4.4 0.0 120.1 8.0 3,-2 0.0555 1 0.0 MINOR ENSMUSG00000070568 Slc6a21 ENSMUST00000209477 - NO_TRANSLATION retained_intron ENSMUSG00000070568 Slc6a21 ENSMUST00000209886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094680 Vmn1r121 ENSMUST00000105197 ENSMUSP00000100832 TRANSLATION protein_coding - CCDS52089.1 - 314.0 0.0 0.0 0.0 59.3 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033967 Rnf225 ENSMUST00000045870 ENSMUSP00000042816 TRANSLATION protein_coding - CCDS20818.1 1 332.0 8.0 0.0 0.1 36.1 0.0 -4,0 0.9773 1 12.0 PRINCIPAL:1 ENSMUSG00000057342 Sphk2 ENSMUST00000072836 ENSMUSP00000072615 TRANSLATION protein_coding - CCDS21261.1 1 617.0 10.0 3.0 1.1 95.0 0.0 -3,-5 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000057342 Sphk2 ENSMUST00000107737 ENSMUSP00000103366 TRANSLATION protein_coding - CCDS21261.1 1 617.0 10.0 3.0 1.1 95.0 0.0 -3,-5 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000057342 Sphk2 ENSMUST00000211340 ENSMUSP00000147787 TRANSLATION protein_coding start/stop - 5 131.0 9.0 2.0 0.0 62.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000057342 Sphk2 ENSMUST00000210060 ENSMUSP00000147391 TRANSLATION protein_coding - CCDS21261.1 1 617.0 10.0 3.0 1.1 95.0 0.0 -3,-5 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000109884 Or5p66 ENSMUST00000210114 ENSMUSP00000147513 TRANSLATION protein_coding - CCDS21710.1 - 314.0 0.0 1.0 11.4 176.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109884 Or5p66 ENSMUST00000211345 ENSMUSP00000147922 TRANSLATION protein_coding - CCDS21710.1 5 314.0 0.0 1.0 11.4 176.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000055489 Ano5 ENSMUST00000207044 ENSMUSP00000147243 TRANSLATION protein_coding - - 1 772.0 0.0 12.0785 0.0 701.7 5.0 -4,-5 0.0559 - 5.088 MINOR ENSMUSG00000055489 Ano5 ENSMUST00000207717 ENSMUSP00000146783 TRANSLATION protein_coding - CCDS85311.1 1 854.0 0.0 12.6765 0.0 676.1 6.0 -4,-5 0.1199 - 4.752 MINOR ENSMUSG00000055489 Ano5 ENSMUST00000043944 ENSMUSP00000046884 TRANSLATION protein_coding - CCDS39968.1 1 904.0 0.0 13.6765 0.0 763.6 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031022 BC051019 ENSMUST00000033334 ENSMUSP00000033334 TRANSLATION protein_coding - CCDS40084.1 1 402.0 0.0 0.0 0.1 129.5 0.0 -4,-7 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000031022 BC051019 ENSMUST00000106735 ENSMUSP00000102346 TRANSLATION protein_coding - CCDS40084.1 1 402.0 0.0 0.0 0.1 129.5 0.0 -4,-7 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000031022 BC051019 ENSMUST00000145211 ENSMUSP00000115006 TRANSLATION protein_coding stop - 2 168.0 0.0 0.0 0.0 33.8 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000044030 Irf2bp1 ENSMUST00000053713 ENSMUSP00000061234 TRANSLATION protein_coding - CCDS20885.1 - 584.0 8.0 0.0 7.6 136.0 0.0 -4,-7 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000062782 Or12j2 ENSMUST00000172230 ENSMUSP00000129414 TRANSLATION protein_coding - CCDS21972.1 - 305.0 0.0 1.0 7.7 154.0 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000062782 Or12j2 ENSMUST00000214143 ENSMUSP00000148971 TRANSLATION protein_coding - CCDS21972.1 5 305.0 0.0 1.0 7.7 154.0 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000062782 Or12j2 ENSMUST00000214858 ENSMUSP00000149080 TRANSLATION protein_coding - CCDS21972.1 5 305.0 0.0 1.0 7.7 154.0 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000064109 Hcst ENSMUST00000075062 ENSMUSP00000074573 TRANSLATION protein_coding - CCDS39882.1 1 79.0 0.0 0.0 6.5 159.1 1.0 2,-3 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000064109 Hcst ENSMUST00000208740 ENSMUSP00000146793 TRANSLATION protein_coding - - 1 71.0 0.0 0.0 4.6 126.8 1.0 -1,-4 0.288 - 5.372 MINOR ENSMUSG00000064109 Hcst ENSMUST00000207504 - NO_TRANSLATION retained_intron ENSMUSG00000030859 Fam24a ENSMUST00000207784 ENSMUSP00000146579 TRANSLATION protein_coding - CCDS40158.1 1 98.0 0.0 1.0 3.7 108.6 1.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030859 Fam24a ENSMUST00000084505 ENSMUSP00000081551 TRANSLATION protein_coding - CCDS40158.1 1 98.0 0.0 1.0 3.7 108.6 1.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030859 Fam24a ENSMUST00000207439 ENSMUSP00000146929 TRANSLATION protein_coding - CCDS40158.1 5 98.0 0.0 1.0 3.7 108.6 1.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000093853 Vmn1r151 ENSMUST00000166079 ENSMUSP00000127282 TRANSLATION protein_coding - CCDS52115.1 - 305.0 0.0 0.0 0.4 55.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000052707 Tnrc6a ENSMUST00000206888 ENSMUSP00000145963 TRANSLATION nonsense_mediated_decay - - 1 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052707 Tnrc6a ENSMUST00000205732 - NO_TRANSLATION retained_intron ENSMUSG00000052707 Tnrc6a ENSMUST00000094053 ENSMUSP00000091595 TRANSLATION protein_coding - CCDS57583.1 1 1896.0 0.0 3.21 0.0 482.8 0.0 -4,-5 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000052707 Tnrc6a ENSMUST00000206126 - NO_TRANSLATION retained_intron ENSMUSG00000052707 Tnrc6a ENSMUST00000206922 - NO_TRANSLATION retained_intron ENSMUSG00000052707 Tnrc6a ENSMUST00000206458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052707 Tnrc6a ENSMUST00000205789 - NO_TRANSLATION retained_intron ENSMUSG00000052707 Tnrc6a ENSMUST00000205449 - NO_TRANSLATION retained_intron ENSMUSG00000052707 Tnrc6a ENSMUST00000206014 ENSMUSP00000146300 TRANSLATION protein_coding start/stop - 3 154.0 0.0 1.06 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000052707 Tnrc6a ENSMUST00000205514 ENSMUSP00000145912 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052707 Tnrc6a ENSMUST00000205760 ENSMUSP00000146266 TRANSLATION protein_coding start - 5 1398.0 0.0 3.21 0.0 482.8 0.0 -4,-5 0.326 16 -2.0 MINOR ENSMUSG00000049580 Tsku ENSMUST00000094161 ENSMUSP00000091713 TRANSLATION protein_coding - CCDS21469.1 1 354.0 0.0 1.0 0.3 85.4 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000049580 Tsku ENSMUST00000165901 ENSMUSP00000127242 TRANSLATION protein_coding - CCDS21469.1 1 354.0 0.0 1.0 0.3 85.4 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000049580 Tsku ENSMUST00000206770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049580 Tsku ENSMUST00000167405 ENSMUSP00000131789 TRANSLATION protein_coding - CCDS21469.1 5 354.0 0.0 1.0 0.3 85.4 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000049580 Tsku ENSMUST00000206414 ENSMUSP00000146025 TRANSLATION protein_coding - CCDS21469.1 1 354.0 0.0 1.0 0.3 85.4 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000049580 Tsku ENSMUST00000165257 ENSMUSP00000128431 TRANSLATION protein_coding - CCDS21469.1 2 354.0 0.0 1.0 0.3 85.4 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000049580 Tsku ENSMUST00000179780 ENSMUSP00000137437 TRANSLATION protein_coding - CCDS21469.1 1 354.0 0.0 1.0 0.3 85.4 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000049580 Tsku ENSMUST00000164726 ENSMUSP00000130917 TRANSLATION protein_coding - CCDS21469.1 2 354.0 0.0 1.0 0.3 85.4 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000048779 P2ry6 ENSMUST00000209196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048779 P2ry6 ENSMUST00000208653 - NO_TRANSLATION retained_intron ENSMUSG00000048779 P2ry6 ENSMUST00000060174 ENSMUSP00000055697 TRANSLATION protein_coding - CCDS21507.1 1 328.0 0.0 1.0 7.3 145.8 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000002204 Napsa ENSMUST00000002274 ENSMUSP00000002274 TRANSLATION protein_coding - CCDS21212.1 1 419.0 5.0 6.772 0.0 357.2 0.0 2,-2 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000002204 Napsa ENSMUST00000208514 ENSMUSP00000146791 TRANSLATION nonsense_mediated_decay start - 3 64.0 0.0 1.0 0.0 57.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000002204 Napsa ENSMUST00000153124 - NO_TRANSLATION retained_intron ENSMUSG00000002204 Napsa ENSMUST00000207543 - NO_TRANSLATION retained_intron ENSMUSG00000002204 Napsa ENSMUST00000207302 - NO_TRANSLATION retained_intron ENSMUSG00000093941 Vmn1r131 ENSMUST00000179390 ENSMUSP00000136388 TRANSLATION protein_coding - CCDS71902.1 - 306.0 0.0 0.0 0.4 56.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030881 Arfip2 ENSMUST00000209870 ENSMUSP00000147307 TRANSLATION nonsense_mediated_decay start - 5 111.0 0.0 2.35 0.0 66.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000030881 Arfip2 ENSMUST00000137931 ENSMUSP00000118616 TRANSLATION nonsense_mediated_decay - - 5 159.0 0.0 1.6 0.0 34.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030881 Arfip2 ENSMUST00000127759 - NO_TRANSLATION retained_intron ENSMUSG00000030881 Arfip2 ENSMUST00000209550 ENSMUSP00000147808 TRANSLATION protein_coding - - 5 337.0 0.0 6.43 28.9 270.4 0.0 -4,-5 0.8443 9 11.612 ALTERNATIVE:1 ENSMUSG00000030881 Arfip2 ENSMUST00000127853 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030881 Arfip2 ENSMUST00000210911 ENSMUSP00000147995 TRANSLATION protein_coding - - 5 267.0 0.0 4.18 2.1 178.0 0.0 -4,-5 0.0291 7 1.644 MINOR ENSMUSG00000030881 Arfip2 ENSMUST00000157028 ENSMUSP00000119837 TRANSLATION nonsense_mediated_decay - - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030881 Arfip2 ENSMUST00000142173 - NO_TRANSLATION retained_intron ENSMUSG00000030881 Arfip2 ENSMUST00000133519 ENSMUSP00000121649 TRANSLATION protein_coding stop - 5 209.0 0.0 3.68 0.0 114.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030881 Arfip2 ENSMUST00000134613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030881 Arfip2 ENSMUST00000084782 ENSMUSP00000081840 TRANSLATION protein_coding - CCDS21656.1 5 341.0 0.0 6.43 31.9 270.4 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:4 ENSMUSG00000030881 Arfip2 ENSMUST00000126589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030881 Arfip2 ENSMUST00000131446 ENSMUSP00000120387 TRANSLATION protein_coding - CCDS21656.1 1 341.0 0.0 6.43 31.9 270.4 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:4 ENSMUSG00000030881 Arfip2 ENSMUST00000033171 ENSMUSP00000033171 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045587 Lypd10 ENSMUST00000051714 ENSMUSP00000053275 TRANSLATION protein_coding - CCDS20960.1 1 246.0 0.0 4.5 0.0 41.1 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000045587 Lypd10 ENSMUST00000206826 ENSMUSP00000145674 TRANSLATION protein_coding stop - 2 118.0 0.0 2.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000012777 Acp4 ENSMUST00000118216 ENSMUSP00000112922 TRANSLATION protein_coding - CCDS57546.1 5 425.0 6.0 5.68 1.1 80.5 1.0 3,-1 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000012777 Acp4 ENSMUST00000012921 ENSMUSP00000012921 TRANSLATION protein_coding stop - 5 392.0 6.0 5.2 0.0 63.4 1.0 3,-1 0.0126 - -2.0 MINOR ENSMUSG00000012777 Acp4 ENSMUST00000107945 ENSMUSP00000103578 TRANSLATION protein_coding stop - 5 486.0 6.0 5.68 0.0 80.5 0.0 3,-1 0.1766 - -2.0 MINOR ENSMUSG00000063594 Gng8 ENSMUST00000206998 - NO_TRANSLATION retained_intron ENSMUSG00000063594 Gng8 ENSMUST00000078182 ENSMUSP00000077314 TRANSLATION protein_coding - CCDS20856.1 1 70.0 0.0 1.75 36.9 58.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000063594 Gng8 ENSMUST00000205598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063594 Gng8 ENSMUST00000205716 ENSMUSP00000145567 TRANSLATION protein_coding - CCDS20856.1 3 70.0 0.0 1.75 36.9 58.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000063594 Gng8 ENSMUST00000205838 - NO_TRANSLATION retained_intron ENSMUSG00000063594 Gng8 ENSMUST00000205459 ENSMUSP00000145533 TRANSLATION protein_coding - CCDS20856.1 3 70.0 0.0 1.75 36.9 58.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000030683 Sez6l2 ENSMUST00000146017 ENSMUSP00000115905 TRANSLATION protein_coding stop - 5 246.0 0.0 0.76 0.0 23.6 0.0 1,-2 0.0 2 -2.0 MINOR ENSMUSG00000030683 Sez6l2 ENSMUST00000155138 ENSMUSP00000146086 TRANSLATION nonsense_mediated_decay start - 5 67.0 0.0 0.35 0.0 0.0 3.0 2,-3 0.0039 - -2.0 MINOR ENSMUSG00000030683 Sez6l2 ENSMUST00000106332 ENSMUSP00000101939 TRANSLATION protein_coding - CCDS57586.1 1 863.0 0.0 6.46 0.7 242.4 3.0 2,-1 0.5304 11 12.0 MINOR ENSMUSG00000030683 Sez6l2 ENSMUST00000134471 - NO_TRANSLATION retained_intron ENSMUSG00000030683 Sez6l2 ENSMUST00000106335 ENSMUSP00000101942 TRANSLATION protein_coding - CCDS57585.1 1 910.0 0.0 6.26 8.0 242.4 3.0 2,-1 0.9107 11 13.857 MINOR ENSMUSG00000030683 Sez6l2 ENSMUST00000106333 ENSMUSP00000101940 TRANSLATION protein_coding - CCDS40135.1 1 923.0 0.0 6.46 10.3 242.4 3.0 2,-1 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000030683 Sez6l2 ENSMUST00000125669 ENSMUSP00000145667 TRANSLATION protein_coding start - 2 136.0 0.0 1.5 0.0 37.2 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000118215 Vmn1r55 ENSMUST00000235878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118215 Vmn1r55 ENSMUST00000235676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118215 Vmn1r55 ENSMUST00000236378 ENSMUSP00000157984 TRANSLATION protein_coding - CCDS51983.1 - 310.0 0.0 0.0 0.0 56.1 5.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000118215 Vmn1r55 ENSMUST00000235536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118215 Vmn1r55 ENSMUST00000236042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118215 Vmn1r55 ENSMUST00000098844 ENSMUSP00000096443 TRANSLATION protein_coding - CCDS51983.1 - 310.0 0.0 0.0 0.0 56.1 5.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044430 Klk12 ENSMUST00000107970 ENSMUSP00000103604 TRANSLATION protein_coding - CCDS52226.1 5 247.0 11.0 4.0 7.2 230.0 0.0 4,-1 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000044430 Klk12 ENSMUST00000014063 ENSMUSP00000014063 TRANSLATION protein_coding - CCDS52226.1 1 247.0 11.0 4.0 7.2 230.0 0.0 4,-1 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000025722 Wdr73 ENSMUST00000152518 - NO_TRANSLATION retained_intron ENSMUSG00000025722 Wdr73 ENSMUST00000135905 - NO_TRANSLATION retained_intron ENSMUSG00000025722 Wdr73 ENSMUST00000026816 ENSMUSP00000026816 TRANSLATION protein_coding - CCDS52282.1 1 371.0 0.0 0.865 11.8 0.0 0.0 -4,-5 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000025722 Wdr73 ENSMUST00000146402 ENSMUSP00000119974 TRANSLATION protein_coding start/stop - 3 240.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0215 7 -2.0 MINOR ENSMUSG00000025722 Wdr73 ENSMUST00000147154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025722 Wdr73 ENSMUST00000133979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025722 Wdr73 ENSMUST00000145923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025722 Wdr73 ENSMUST00000139990 - NO_TRANSLATION retained_intron ENSMUSG00000025722 Wdr73 ENSMUST00000147589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025722 Wdr73 ENSMUST00000131651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030917 Ldaf1 ENSMUST00000155330 - NO_TRANSLATION retained_intron ENSMUSG00000030917 Ldaf1 ENSMUST00000118737 ENSMUSP00000114085 TRANSLATION protein_coding - CCDS21791.1 5 161.0 0.0 3.0 6.5 77.4 1.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000030917 Ldaf1 ENSMUST00000033210 ENSMUSP00000033210 TRANSLATION protein_coding - CCDS21791.1 1 161.0 0.0 3.0 6.5 77.4 1.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000030917 Ldaf1 ENSMUST00000208968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074006 Omp ENSMUST00000098281 ENSMUSP00000095882 TRANSLATION protein_coding - CCDS21466.1 - 163.0 0.0 1.0 11.1 260.2 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000057321 Usp17ld ENSMUST00000073394 ENSMUSP00000073107 TRANSLATION protein_coding - CCDS21567.1 1 545.0 4.0 0.6 0.1 176.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025485 Ric8a ENSMUST00000153498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025485 Ric8a ENSMUST00000131850 - NO_TRANSLATION retained_intron ENSMUSG00000025485 Ric8a ENSMUST00000139956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025485 Ric8a ENSMUST00000147815 - NO_TRANSLATION retained_intron ENSMUSG00000025485 Ric8a ENSMUST00000209766 ENSMUSP00000147952 TRANSLATION protein_coding start - 5 328.0 0.0 6.33 0.0 289.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000025485 Ric8a ENSMUST00000026558 ENSMUSP00000026558 TRANSLATION protein_coding - CCDS21988.1 1 530.0 0.0 11.08 7.3 421.2 0.0 -4,-5 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000025485 Ric8a ENSMUST00000151384 - NO_TRANSLATION retained_intron ENSMUSG00000025485 Ric8a ENSMUST00000210708 ENSMUSP00000147773 TRANSLATION nonsense_mediated_decay - - 5 160.0 0.0 2.25 0.0 38.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025485 Ric8a ENSMUST00000123925 - NO_TRANSLATION retained_intron ENSMUSG00000025485 Ric8a ENSMUST00000210601 - NO_TRANSLATION retained_intron ENSMUSG00000025485 Ric8a ENSMUST00000152212 - NO_TRANSLATION retained_intron ENSMUSG00000070460 Or5ae2 ENSMUST00000211582 ENSMUSP00000148266 TRANSLATION protein_coding - CCDS21420.1 2 317.0 0.0 1.0 5.4 182.8 6.0 -4,-5 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000070460 Or5ae2 ENSMUST00000217039 ENSMUSP00000150934 TRANSLATION protein_coding - - 2 315.0 0.0 1.0 5.4 182.8 6.0 -4,-5 0.7805 - 10.0 ALTERNATIVE:1 ENSMUSG00000006335 Tfpt ENSMUST00000205596 ENSMUSP00000145936 TRANSLATION protein_coding stop - 5 84.0 0.0 0.95 0.0 0.0 0.0 -4,-5 0.0045 1 -2.0 MINOR ENSMUSG00000006335 Tfpt ENSMUST00000153143 ENSMUSP00000120930 TRANSLATION nonsense_mediated_decay - - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0107 - -2.0 MINOR ENSMUSG00000006335 Tfpt ENSMUST00000155592 ENSMUSP00000123636 TRANSLATION protein_coding - CCDS20720.1 1 249.0 0.0 2.7 9.5 0.0 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000006335 Tfpt ENSMUST00000206370 ENSMUSP00000146255 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0107 - -2.0 MINOR ENSMUSG00000006335 Tfpt ENSMUST00000156194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006335 Tfpt ENSMUST00000108641 ENSMUSP00000104281 TRANSLATION protein_coding - CCDS71873.1 1 259.0 0.0 2.7 0.4 0.0 0.0 -4,-5 0.2428 2 6.0 MINOR ENSMUSG00000006335 Tfpt ENSMUST00000058880 ENSMUSP00000053108 TRANSLATION nonsense_mediated_decay start - 5 156.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000025487 Psmd13 ENSMUST00000166889 ENSMUSP00000126532 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000025487 Psmd13 ENSMUST00000164681 ENSMUSP00000132405 TRANSLATION protein_coding - - 5 241.0 0.0 5.75 0.0 0.0 0.0 -4,-5 0.0 8 0.0 MINOR ENSMUSG00000025487 Psmd13 ENSMUST00000151644 - NO_TRANSLATION retained_intron ENSMUSG00000025487 Psmd13 ENSMUST00000146875 - NO_TRANSLATION retained_intron ENSMUSG00000025487 Psmd13 ENSMUST00000130462 ENSMUSP00000126160 TRANSLATION protein_coding start - 2 206.0 0.0 5.33 0.0 45.6 0.0 -4,-5 0.0016 9 -2.0 MINOR ENSMUSG00000025487 Psmd13 ENSMUST00000163610 ENSMUSP00000130580 TRANSLATION protein_coding - - 5 349.0 0.0 10.58 2.0 0.0 0.0 -4,-5 0.0527 17 4.62 MINOR ENSMUSG00000025487 Psmd13 ENSMUST00000129683 - NO_TRANSLATION retained_intron ENSMUSG00000025487 Psmd13 ENSMUST00000125668 - NO_TRANSLATION retained_intron ENSMUSG00000025487 Psmd13 ENSMUST00000026560 ENSMUSP00000026560 TRANSLATION protein_coding - CCDS21990.1 1 376.0 0.0 11.33 34.0 45.6 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000025487 Psmd13 ENSMUST00000165539 ENSMUSP00000130256 TRANSLATION protein_coding start/stop - 5 96.0 0.0 1.83 0.0 29.9 0.0 -4,-7 0.0006 3 -2.0 MINOR ENSMUSG00000025487 Psmd13 ENSMUST00000140411 - NO_TRANSLATION retained_intron ENSMUSG00000011154 Cfap161 ENSMUST00000119134 ENSMUSP00000114051 TRANSLATION protein_coding - - 1 257.0 0.0 5.18 0.0 0.0 0.0 -4,-5 0.0078 - 4.158 MINOR ENSMUSG00000011154 Cfap161 ENSMUST00000011298 ENSMUSP00000011298 TRANSLATION protein_coding - CCDS21413.1 1 303.0 0.0 6.1 4.2 0.0 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000011154 Cfap161 ENSMUST00000208785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011154 Cfap161 ENSMUST00000149671 ENSMUSP00000115281 TRANSLATION protein_coding stop - 3 158.0 0.0 2.9 0.0 0.0 0.0 -4,-7 0.0045 - -2.0 MINOR ENSMUSG00000041309 Nkx6-2 ENSMUST00000097974 ENSMUSP00000095588 TRANSLATION nonsense_mediated_decay - CCDS40170.1 1 277.0 0.0 1.6 6.4 74.5 0.0 -4,-7 1.0 1 -2.0 MINOR ENSMUSG00000041309 Nkx6-2 ENSMUST00000106095 ENSMUSP00000101701 TRANSLATION protein_coding - CCDS40170.1 1 277.0 0.0 1.6 6.4 74.5 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000054272 Zscan4c ENSMUST00000131379 ENSMUSP00000118506 TRANSLATION protein_coding - CCDS52012.1 1 506.0 15.0 0.2 0.0 112.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000046438 Scgb2b24 ENSMUST00000055444 ENSMUSP00000052456 TRANSLATION protein_coding - CCDS21132.1 1 112.0 0.0 2.15 0.1 98.5 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078776 Fcgbpl1 ENSMUST00000150948 ENSMUSP00000114986 TRANSLATION protein_coding - CCDS52160.1 5 2581.0 0.0 2.395 0.1 1482.8 0.0 3,-2 1.0 68 12.0 PRINCIPAL:1 ENSMUSG00000078776 Fcgbpl1 ENSMUST00000129051 - NO_TRANSLATION retained_intron ENSMUSG00000078776 Fcgbpl1 ENSMUST00000130693 - NO_TRANSLATION retained_intron ENSMUSG00000078776 Fcgbpl1 ENSMUST00000059886 ENSMUSP00000056479 TRANSLATION protein_coding - CCDS52160.1 5 2581.0 0.0 2.395 0.1 1482.8 0.0 3,-2 1.0 68 12.0 PRINCIPAL:1 ENSMUSG00000051527 Usp29 ENSMUST00000197117 ENSMUSP00000143283 TRANSLATION protein_coding stop - 1 198.0 0.0 0.32 0.0 119.5 0.0 -4,-1 0.0499 2 -2.0 MINOR ENSMUSG00000051527 Usp29 ENSMUST00000054055 ENSMUSP00000062349 TRANSLATION protein_coding - CCDS20784.1 - 869.0 4.0 0.32 0.0 285.1 0.0 -4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000051527 Usp29 ENSMUST00000200535 ENSMUSP00000143769 TRANSLATION protein_coding - CCDS20784.1 5 869.0 4.0 0.32 0.0 285.1 0.0 -4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000051527 Usp29 ENSMUST00000207899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051527 Usp29 ENSMUST00000208662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051527 Usp29 ENSMUST00000208195 - NO_TRANSLATION retained_intron ENSMUSG00000051527 Usp29 ENSMUST00000208952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051527 Usp29 ENSMUST00000208642 - NO_TRANSLATION retained_intron ENSMUSG00000051527 Usp29 ENSMUST00000198068 ENSMUSP00000143267 TRANSLATION protein_coding - CCDS20784.1 5 869.0 4.0 0.32 0.0 285.1 0.0 -4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000003872 Lin7b ENSMUST00000210216 - NO_TRANSLATION retained_intron ENSMUSG00000003872 Lin7b ENSMUST00000210865 ENSMUSP00000147294 TRANSLATION nonsense_mediated_decay start - 5 52.0 0.0 1.63 0.0 41.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000003872 Lin7b ENSMUST00000209756 - NO_TRANSLATION retained_intron ENSMUSG00000003872 Lin7b ENSMUST00000211416 - NO_TRANSLATION retained_intron ENSMUSG00000003872 Lin7b ENSMUST00000209226 - NO_TRANSLATION retained_intron ENSMUSG00000003872 Lin7b ENSMUST00000003971 ENSMUSP00000003971 TRANSLATION protein_coding - CCDS21239.1 1 207.0 0.0 6.08 16.3 134.4 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025103 Btbd1 ENSMUST00000208178 - NO_TRANSLATION retained_intron ENSMUSG00000025103 Btbd1 ENSMUST00000208114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025103 Btbd1 ENSMUST00000208566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025103 Btbd1 ENSMUST00000026093 ENSMUSP00000026093 TRANSLATION protein_coding - CCDS21407.1 1 488.0 0.0 6.63 3.6 294.3 0.0 -3,-4 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000095275 Vmn1r107 ENSMUST00000179079 ENSMUSP00000136232 TRANSLATION protein_coding - CCDS52077.1 - 307.0 0.0 0.0 0.4 55.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000052296 Ppp6r1 ENSMUST00000064099 ENSMUSP00000066736 TRANSLATION protein_coding - CCDS39737.1 1 856.0 0.0 0.0 0.4 223.5 0.0 -4,-5 1.0 20 6.0 PRINCIPAL:1 ENSMUSG00000052296 Ppp6r1 ENSMUST00000206966 ENSMUSP00000146109 TRANSLATION nonsense_mediated_decay start - 5 146.0 0.0 0.0 0.0 118.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000052296 Ppp6r1 ENSMUST00000206532 ENSMUSP00000145575 TRANSLATION protein_coding stop - 5 253.0 0.0 0.0 0.0 125.9 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000052296 Ppp6r1 ENSMUST00000205374 ENSMUSP00000146290 TRANSLATION protein_coding stop - 3 154.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000052296 Ppp6r1 ENSMUST00000206768 - NO_TRANSLATION retained_intron ENSMUSG00000052296 Ppp6r1 ENSMUST00000206391 - NO_TRANSLATION retained_intron ENSMUSG00000053565 Eif3k ENSMUST00000207683 ENSMUSP00000146940 TRANSLATION protein_coding - CCDS85254.1 1 185.0 0.0 5.33 0.0 119.4 0.0 -4,-7 0.1653 4 10.002 MINOR ENSMUSG00000053565 Eif3k ENSMUST00000066070 ENSMUSP00000066038 TRANSLATION protein_coding - CCDS21062.1 1 218.0 0.0 6.33 24.5 119.4 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000053565 Eif3k ENSMUST00000208810 - NO_TRANSLATION retained_intron ENSMUSG00000053565 Eif3k ENSMUST00000207762 - NO_TRANSLATION retained_intron ENSMUSG00000053565 Eif3k ENSMUST00000208707 ENSMUSP00000147087 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000053565 Eif3k ENSMUST00000208616 ENSMUSP00000147214 TRANSLATION protein_coding - CCDS85255.1 1 192.0 0.0 5.0 0.0 119.4 0.0 -4,-7 0.0604 4 9.342 MINOR ENSMUSG00000030577 Cd22 ENSMUST00000187989 ENSMUSP00000141178 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0016 - -2.0 MINOR ENSMUSG00000030577 Cd22 ENSMUST00000187436 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030577 Cd22 ENSMUST00000108125 ENSMUSP00000103760 TRANSLATION protein_coding - CCDS21114.1 1 868.0 0.0 5.078 0.0 215.3 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000030577 Cd22 ENSMUST00000190753 ENSMUSP00000140014 TRANSLATION protein_coding stop - 5 49.0 0.0 0.8 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000030577 Cd22 ENSMUST00000019248 ENSMUSP00000019248 TRANSLATION protein_coding - CCDS21114.1 1 868.0 0.0 5.078 0.0 215.3 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000030577 Cd22 ENSMUST00000190617 ENSMUSP00000139871 TRANSLATION protein_coding - CCDS21114.1 1 868.0 0.0 5.078 0.0 215.3 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000030577 Cd22 ENSMUST00000186354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030577 Cd22 ENSMUST00000186154 ENSMUSP00000139685 TRANSLATION protein_coding - CCDS21114.1 1 868.0 0.0 5.078 0.0 215.3 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000030577 Cd22 ENSMUST00000190646 ENSMUSP00000140528 TRANSLATION nonsense_mediated_decay - - 5 353.0 0.0 2.3 0.0 91.7 0.0 3,-2 0.0 1 -2.0 MINOR ENSMUSG00000030577 Cd22 ENSMUST00000188157 ENSMUSP00000140450 TRANSLATION protein_coding stop - 3 147.0 0.0 1.3 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000030577 Cd22 ENSMUST00000187585 - NO_TRANSLATION retained_intron ENSMUSG00000030577 Cd22 ENSMUST00000189718 ENSMUSP00000140521 TRANSLATION protein_coding - CCDS21114.1 1 868.0 0.0 5.078 0.0 215.3 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000030577 Cd22 ENSMUST00000190455 ENSMUSP00000140357 TRANSLATION nonsense_mediated_decay start - 5 95.0 0.0 0.5 0.0 56.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030577 Cd22 ENSMUST00000214289 ENSMUSP00000150025 TRANSLATION protein_coding stop - 5 663.0 0.0 4.3 0.0 170.3 0.0 3,-2 0.0085 4 -2.0 MINOR ENSMUSG00000030577 Cd22 ENSMUST00000190170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030577 Cd22 ENSMUST00000186333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074121 Ntf5 ENSMUST00000058879 ENSMUSP00000057916 TRANSLATION protein_coding - CCDS21241.1 1 209.0 0.0 1.0 4.2 154.1 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000074121 Ntf5 ENSMUST00000210347 ENSMUSP00000148209 TRANSLATION protein_coding stop - 5 54.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.002 - -2.0 MINOR ENSMUSG00000094748 Vmn1r255 ENSMUST00000174637 ENSMUSP00000134659 TRANSLATION protein_coding - CCDS71909.1 - 307.0 0.0 0.0 0.4 54.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030786 Itgam ENSMUST00000119696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030786 Itgam ENSMUST00000106242 ENSMUSP00000101849 TRANSLATION protein_coding - CCDS21889.1 1 1153.0 29.0 22.03 7.2 339.3 1.0 4,-1 1.0 22 16.0 PRINCIPAL:4 ENSMUSG00000030786 Itgam ENSMUST00000156593 ENSMUSP00000121676 TRANSLATION nonsense_mediated_decay - - 3 94.0 0.0 1.635 0.0 0.0 0.0 4,-1 0.0008 1 -2.0 MINOR ENSMUSG00000030786 Itgam ENSMUST00000120355 ENSMUSP00000113957 TRANSLATION protein_coding - - 5 1167.0 29.0 22.03 0.0 316.5 1.0 4,-1 0.1998 22 13.25 MINOR ENSMUSG00000030786 Itgam ENSMUST00000064821 ENSMUSP00000068468 TRANSLATION protein_coding - CCDS40149.1 5 1154.0 29.0 22.03 7.2 339.3 1.0 4,-1 0.9997 22 16.0 ALTERNATIVE:1 ENSMUSG00000030786 Itgam ENSMUST00000106240 ENSMUSP00000101847 TRANSLATION protein_coding - - 1 1036.0 11.0 20.03 0.0 303.8 1.0 4,-1 0.0399 19 3.248 MINOR ENSMUSG00000002984 Tomm40 ENSMUST00000032555 ENSMUSP00000032555 TRANSLATION protein_coding - CCDS52062.1 1 361.0 0.0 7.7 3.9 262.2 0.0 -4,-6 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000002984 Tomm40 ENSMUST00000173966 - NO_TRANSLATION retained_intron ENSMUSG00000002984 Tomm40 ENSMUST00000093552 ENSMUSP00000104090 TRANSLATION protein_coding - CCDS52062.1 1 361.0 0.0 7.7 3.9 262.2 0.0 -4,-6 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000002984 Tomm40 ENSMUST00000172705 ENSMUSP00000133975 TRANSLATION protein_coding start - 2 73.0 0.0 1.75 0.0 57.9 0.0 -3,-5 0.0 1 -2.0 MINOR ENSMUSG00000002984 Tomm40 ENSMUST00000208286 - NO_TRANSLATION retained_intron ENSMUSG00000002984 Tomm40 ENSMUST00000174476 - NO_TRANSLATION retained_intron ENSMUSG00000030491 Tdrd12 ENSMUST00000032701 ENSMUSP00000032701 TRANSLATION protein_coding - CCDS21151.1 1 407.0 0.0 0.0730000000000001 0.0 87.4 0.0 -4,-5 0.0476 - 0.972 MINOR ENSMUSG00000030491 Tdrd12 ENSMUST00000193633 ENSMUSP00000141796 TRANSLATION protein_coding - - 5 1216.0 0.0 3.6105 0.0 171.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030491 Tdrd12 ENSMUST00000205407 ENSMUSP00000145609 TRANSLATION protein_coding - - 5 354.0 0.0 0.573 0.0 48.4 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000030491 Tdrd12 ENSMUST00000127472 ENSMUSP00000118671 TRANSLATION protein_coding stop - 3 204.0 0.0 0.573 0.0 48.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030491 Tdrd12 ENSMUST00000187190 ENSMUSP00000140328 TRANSLATION protein_coding stop - 5 1113.0 0.0 2.823 0.0 149.8 0.0 -4,-5 0.0609 - -2.0 MINOR ENSMUSG00000030491 Tdrd12 ENSMUST00000206641 ENSMUSP00000145652 TRANSLATION protein_coding start - 3 127.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051172 Or52e15 ENSMUST00000213942 ENSMUSP00000149704 TRANSLATION protein_coding - CCDS40073.1 3 312.0 0.0 1.0 10.2 368.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051172 Or52e15 ENSMUST00000050599 ENSMUSP00000054607 TRANSLATION protein_coding - CCDS40073.1 - 312.0 0.0 1.0 10.2 368.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073998 Or2at4 ENSMUST00000220185 ENSMUSP00000151459 TRANSLATION protein_coding - CCDS21486.1 5 316.0 0.0 1.0 1.2 198.5 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000073998 Or2at4 ENSMUST00000098264 ENSMUSP00000095864 TRANSLATION protein_coding - CCDS21486.1 - 316.0 0.0 1.0 1.2 198.5 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000073940 Hbb-bt ENSMUST00000098192 ENSMUSP00000095794 TRANSLATION protein_coding - CCDS40060.1 1 147.0 20.0 3.0 30.9 103.5 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000030790 Adm ENSMUST00000185766 - NO_TRANSLATION retained_intron ENSMUSG00000030790 Adm ENSMUST00000033054 ENSMUSP00000033054 TRANSLATION protein_coding - CCDS21745.1 1 184.0 0.0 0.8 4.0 99.9 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000066258 Trim12a ENSMUST00000106839 ENSMUSP00000102452 TRANSLATION protein_coding - CCDS40067.1 1 297.0 16.0 3.03 0.0 74.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000066258 Trim12a ENSMUST00000126145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066258 Trim12a ENSMUST00000106837 ENSMUSP00000102450 TRANSLATION protein_coding - - 5 265.0 16.0 2.53 0.0 74.9 0.0 -4,-5 0.0163 - 12.998 ALTERNATIVE:2 ENSMUSG00000066258 Trim12a ENSMUST00000134564 - NO_TRANSLATION retained_intron ENSMUSG00000066258 Trim12a ENSMUST00000070943 ENSMUSP00000065008 TRANSLATION protein_coding - - 1 284.0 16.0 1.9 0.0 74.9 0.0 -4,-5 0.051 - 11.738 MINOR ENSMUSG00000066258 Trim12a ENSMUST00000142641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000084174 Sycn ENSMUST00000119180 ENSMUSP00000112770 TRANSLATION protein_coding - CCDS21048.1 1 134.0 3.0 1.0 2.1 190.2 0.0 4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000030495 Slc7a10 ENSMUST00000131048 ENSMUSP00000118331 TRANSLATION nonsense_mediated_decay - - 5 395.0 0.0 7.096 0.0 82.7 8.0 -4,-5 0.0054 - -2.0 MINOR ENSMUSG00000030495 Slc7a10 ENSMUST00000001854 ENSMUSP00000001854 TRANSLATION protein_coding - CCDS21146.1 1 530.0 0.0 11.38 0.4 119.1 12.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000030495 Slc7a10 ENSMUST00000167441 ENSMUSP00000129954 TRANSLATION nonsense_mediated_decay - - 5 77.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030495 Slc7a10 ENSMUST00000135452 ENSMUSP00000127577 TRANSLATION protein_coding - - 1 125.0 0.0 1.2 0.0 30.3 2.0 -4,-5 0.0 - 0.672 MINOR ENSMUSG00000030495 Slc7a10 ENSMUST00000146959 ENSMUSP00000127311 TRANSLATION protein_coding start - 3 83.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0033 - -2.0 MINOR ENSMUSG00000037563 Rps16 ENSMUST00000152918 - NO_TRANSLATION retained_intron ENSMUSG00000037563 Rps16 ENSMUST00000082134 ENSMUSP00000103940 TRANSLATION protein_coding - CCDS39858.1 1 146.0 0.0 4.0 32.7 117.3 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000037563 Rps16 ENSMUST00000155805 - NO_TRANSLATION retained_intron ENSMUSG00000035177 Nlrp2 ENSMUST00000207685 ENSMUSP00000146451 TRANSLATION nonsense_mediated_decay start - 3 87.0 0.0 1.616 0.0 30.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035177 Nlrp2 ENSMUST00000045022 ENSMUSP00000045077 TRANSLATION protein_coding - CCDS39746.1 1 1046.0 5.0 6.215 0.1 213.7 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000035177 Nlrp2 ENSMUST00000207520 ENSMUSP00000147102 TRANSLATION protein_coding start/stop - 3 248.0 0.0 3.4 0.0 33.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000078670 Fam174b ENSMUST00000205946 ENSMUSP00000145753 TRANSLATION protein_coding start - 3 54.0 0.0 0.0 0.0 68.2 0.0 -4,-7 0.0002 3 -2.0 MINOR ENSMUSG00000078670 Fam174b ENSMUST00000206337 - NO_TRANSLATION retained_intron ENSMUSG00000078670 Fam174b ENSMUST00000107456 ENSMUSP00000103080 TRANSLATION protein_coding - CCDS52275.1 1 153.0 0.0 0.0 0.0 145.8 0.0 4,-1 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000060747 Ifnl3 ENSMUST00000078364 ENSMUSP00000077473 TRANSLATION protein_coding - CCDS21047.1 1 193.0 0.0 4.1 1.1 231.1 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030782 Tgfb1i1 ENSMUST00000165667 ENSMUSP00000127695 TRANSLATION protein_coding - - 1 422.0 27.0 3.95 0.0 219.4 0.0 -4,-5 0.0313 11 16.164 MINOR ENSMUSG00000030782 Tgfb1i1 ENSMUST00000163553 - NO_TRANSLATION retained_intron ENSMUSG00000030782 Tgfb1i1 ENSMUST00000166755 - NO_TRANSLATION retained_intron ENSMUSG00000030782 Tgfb1i1 ENSMUST00000171888 - NO_TRANSLATION retained_intron ENSMUSG00000030782 Tgfb1i1 ENSMUST00000206691 - NO_TRANSLATION retained_intron ENSMUSG00000030782 Tgfb1i1 ENSMUST00000169919 ENSMUSP00000131705 TRANSLATION nonsense_mediated_decay - - 1 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030782 Tgfb1i1 ENSMUST00000168825 ENSMUSP00000132685 TRANSLATION nonsense_mediated_decay start - 5 112.0 0.0 0.0 0.0 35.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030782 Tgfb1i1 ENSMUST00000070656 ENSMUSP00000068529 TRANSLATION protein_coding - - 1 444.0 27.0 3.95 4.3 250.0 0.0 -4,-5 0.3063 12 18.96 MINOR ENSMUSG00000030782 Tgfb1i1 ENSMUST00000170115 ENSMUSP00000129958 TRANSLATION nonsense_mediated_decay - - 5 114.0 0.0 0.0 0.0 40.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030782 Tgfb1i1 ENSMUST00000167965 ENSMUSP00000132100 TRANSLATION protein_coding - CCDS21893.2 1 461.0 27.0 3.95 11.3 250.0 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000030782 Tgfb1i1 ENSMUST00000205654 - NO_TRANSLATION retained_intron ENSMUSG00000030782 Tgfb1i1 ENSMUST00000164710 ENSMUSP00000130964 TRANSLATION protein_coding - - 1 483.0 27.0 3.95 0.0 250.0 0.0 -4,-7 0.067 12 18.0 MINOR ENSMUSG00000032640 Chsy1 ENSMUST00000036372 ENSMUSP00000047487 TRANSLATION protein_coding - CCDS39978.1 1 800.0 3.0 0.542 8.6 672.0 0.0 3,-4 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000057894 Zfp329 ENSMUST00000072222 ENSMUSP00000072079 TRANSLATION protein_coding - CCDS20813.1 1 522.0 48.0 1.6 0.0 284.4 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000057894 Zfp329 ENSMUST00000121215 ENSMUSP00000113355 TRANSLATION nonsense_mediated_decay - CCDS20813.1 1 522.0 48.0 1.6 0.0 284.4 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000057894 Zfp329 ENSMUST00000129647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057894 Zfp329 ENSMUST00000108546 ENSMUSP00000104186 TRANSLATION protein_coding - - 1 312.0 12.0 1.275 0.0 82.3 0.0 -4,-5 0.003 - 4.782 MINOR ENSMUSG00000035674 Ndufa3 ENSMUST00000108644 ENSMUSP00000104284 TRANSLATION protein_coding - - 3 100.0 0.0 2.08 0.0 145.4 2.0 -4,-7 0.0138 2 9.966 MINOR ENSMUSG00000035674 Ndufa3 ENSMUST00000156712 - NO_TRANSLATION retained_intron ENSMUSG00000035674 Ndufa3 ENSMUST00000148403 ENSMUSP00000116988 TRANSLATION nonsense_mediated_decay - - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035674 Ndufa3 ENSMUST00000076657 ENSMUSP00000075953 TRANSLATION protein_coding - CCDS39728.1 1 84.0 0.0 2.58 16.5 159.9 2.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000035674 Ndufa3 ENSMUST00000150497 - NO_TRANSLATION retained_intron ENSMUSG00000035674 Ndufa3 ENSMUST00000134683 ENSMUSP00000116828 TRANSLATION nonsense_mediated_decay start - 3 42.0 0.0 0.99 0.0 38.5 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000030406 Gipr ENSMUST00000206971 ENSMUSP00000145860 TRANSLATION nonsense_mediated_decay - - 1 140.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0017 - -2.0 MINOR ENSMUSG00000030406 Gipr ENSMUST00000206137 - NO_TRANSLATION retained_intron ENSMUSG00000030406 Gipr ENSMUST00000094790 ENSMUSP00000092384 TRANSLATION protein_coding - CCDS39795.1 5 460.0 0.0 9.8 0.0 331.4 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030406 Gipr ENSMUST00000206857 - NO_TRANSLATION retained_intron ENSMUSG00000051182 Or52ac1 ENSMUST00000057385 ENSMUSP00000054108 TRANSLATION protein_coding - CCDS21621.1 - 308.0 0.0 1.0 4.8 313.7 7.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051182 Or52ac1 ENSMUST00000215434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051182 Or52ac1 ENSMUST00000216750 ENSMUSP00000150891 TRANSLATION protein_coding - CCDS21621.1 5 308.0 0.0 1.0 4.8 313.7 7.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051182 Or52ac1 ENSMUST00000215538 ENSMUSP00000150381 TRANSLATION protein_coding - CCDS21621.1 5 308.0 0.0 1.0 4.8 313.7 7.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000004371 Il11 ENSMUST00000234277 ENSMUSP00000157240 TRANSLATION protein_coding - CCDS71881.1 - 140.0 0.0 2.75 0.4 267.9 0.0 -4,-5 0.0097 - 6.168 MINOR ENSMUSG00000004371 Il11 ENSMUST00000163481 ENSMUSP00000131168 TRANSLATION protein_coding - CCDS71881.1 1 140.0 0.0 2.75 0.4 267.9 0.0 -4,-5 0.0097 - 6.168 MINOR ENSMUSG00000004371 Il11 ENSMUST00000094892 ENSMUSP00000092492 TRANSLATION protein_coding - CCDS39740.1 1 199.0 0.0 3.55 6.1 338.4 0.0 1,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043925 Or55b4 ENSMUST00000051201 ENSMUSP00000051280 TRANSLATION protein_coding - CCDS21532.1 2 334.0 0.0 1.0 6.5 244.5 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000066279 Chrna10 ENSMUST00000084830 ENSMUSP00000081891 TRANSLATION protein_coding - CCDS40047.1 1 447.0 0.0 3.5 4.0 330.1 0.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000066279 Chrna10 ENSMUST00000211408 ENSMUSP00000147577 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0 - -2.0 MINOR ENSMUSG00000004651 Tyr ENSMUST00000207834 ENSMUSP00000146757 TRANSLATION protein_coding stop - 3 158.0 3.0 1.8 0.0 46.2 0.0 3,-1 0.0006 2 -2.0 MINOR ENSMUSG00000004651 Tyr ENSMUST00000004770 ENSMUSP00000004770 TRANSLATION protein_coding - CCDS52304.1 1 533.0 6.0 7.2 11.6 145.7 0.0 3,-1 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000004651 Tyr ENSMUST00000207164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066516 Klk1b21 ENSMUST00000085455 ENSMUSP00000082582 TRANSLATION protein_coding - CCDS21195.1 1 261.0 6.0 4.0 6.1 236.8 0.0 4,-1 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000062944 9130023H24Rik ENSMUST00000078816 ENSMUSP00000077867 TRANSLATION protein_coding - CCDS40151.1 - 337.0 36.0 1.0 0.4 190.0 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000057101 Zfp180 ENSMUST00000203854 ENSMUSP00000145165 TRANSLATION protein_coding - - 1 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000057101 Zfp180 ENSMUST00000206482 - NO_TRANSLATION retained_intron ENSMUSG00000057101 Zfp180 ENSMUST00000068975 ENSMUSP00000064611 TRANSLATION protein_coding - CCDS39823.1 1 655.0 48.0 1.0 0.4 296.7 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000057101 Zfp180 ENSMUST00000206184 ENSMUSP00000145547 TRANSLATION nonsense_mediated_decay - - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057101 Zfp180 ENSMUST00000207002 ENSMUSP00000146219 TRANSLATION protein_coding - - 1 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000030468 Siglecg ENSMUST00000005592 ENSMUSP00000005592 TRANSLATION protein_coding - CCDS52221.1 1 688.0 0.0 3.82 0.0 85.3 0.0 2,-1 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000030468 Siglecg ENSMUST00000131744 - NO_TRANSLATION retained_intron ENSMUSG00000030468 Siglecg ENSMUST00000124885 - NO_TRANSLATION retained_intron ENSMUSG00000030468 Siglecg ENSMUST00000123042 - NO_TRANSLATION retained_intron ENSMUSG00000030468 Siglecg ENSMUST00000154322 - NO_TRANSLATION retained_intron ENSMUSG00000030468 Siglecg ENSMUST00000124502 - NO_TRANSLATION retained_intron ENSMUSG00000013921 Clip3 ENSMUST00000132844 - NO_TRANSLATION retained_intron ENSMUSG00000013921 Clip3 ENSMUST00000014065 ENSMUSP00000014065 TRANSLATION protein_coding - CCDS39880.1 1 547.0 0.0 8.35 8.9 201.0 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000013921 Clip3 ENSMUST00000144508 ENSMUSP00000121276 TRANSLATION protein_coding stop - 3 84.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000013921 Clip3 ENSMUST00000125935 - NO_TRANSLATION retained_intron ENSMUSG00000013921 Clip3 ENSMUST00000126216 ENSMUSP00000123660 TRANSLATION protein_coding stop - 5 80.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000013921 Clip3 ENSMUST00000145253 - NO_TRANSLATION retained_intron ENSMUSG00000013921 Clip3 ENSMUST00000150892 ENSMUSP00000123164 TRANSLATION protein_coding stop - 2 133.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000008384 Sertad1 ENSMUST00000008528 ENSMUSP00000008528 TRANSLATION protein_coding - CCDS21022.1 1 236.0 0.0 0.0 8.5 55.6 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000008384 Sertad1 ENSMUST00000135881 ENSMUSP00000119180 TRANSLATION protein_coding stop - 3 84.0 0.0 0.0 0.0 55.6 0.0 -4,-5 0.022 - -2.0 MINOR ENSMUSG00000037519 Ppfia1 ENSMUST00000182958 ENSMUSP00000138175 TRANSLATION nonsense_mediated_decay start - 5 562.0 0.0 3.85 0.0 65.3 0.0 -4,-5 0.0009 9 -2.0 MINOR ENSMUSG00000037519 Ppfia1 ENSMUST00000182982 - NO_TRANSLATION retained_intron ENSMUSG00000037519 Ppfia1 ENSMUST00000183106 - NO_TRANSLATION retained_intron ENSMUSG00000037519 Ppfia1 ENSMUST00000183063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037519 Ppfia1 ENSMUST00000182226 ENSMUSP00000138312 TRANSLATION protein_coding - CCDS59738.1 1 1266.0 0.0 10.3525 4.9 99.4 0.0 -4,-5 0.9308 21 9.238 ALTERNATIVE:1 ENSMUSG00000037519 Ppfia1 ENSMUST00000168134 ENSMUSP00000126233 TRANSLATION protein_coding - CCDS52464.1 1 1241.0 0.0 10.3525 7.3 99.4 0.0 -4,-5 1.0 21 10.0 PRINCIPAL:4 ENSMUSG00000037519 Ppfia1 ENSMUST00000207298 - NO_TRANSLATION retained_intron ENSMUSG00000037519 Ppfia1 ENSMUST00000207471 - NO_TRANSLATION retained_intron ENSMUSG00000037519 Ppfia1 ENSMUST00000182731 ENSMUSP00000138238 TRANSLATION nonsense_mediated_decay start - 3 94.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037519 Ppfia1 ENSMUST00000183183 - NO_TRANSLATION retained_intron ENSMUSG00000037519 Ppfia1 ENSMUST00000183197 - NO_TRANSLATION retained_intron ENSMUSG00000030795 Fus ENSMUST00000155941 - NO_TRANSLATION retained_intron ENSMUSG00000030795 Fus ENSMUST00000141997 ENSMUSP00000134447 TRANSLATION protein_coding start - 2 104.0 4.0 1.5 0.0 48.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030795 Fus ENSMUST00000121616 ENSMUSP00000112721 TRANSLATION protein_coding - - 1 280.0 4.0 2.4 0.0 48.8 0.0 -4,-5 0.0 3 6.0 MINOR ENSMUSG00000030795 Fus ENSMUST00000123151 - NO_TRANSLATION retained_intron ENSMUSG00000030795 Fus ENSMUST00000205351 - NO_TRANSLATION retained_intron ENSMUSG00000030795 Fus ENSMUST00000174196 - NO_TRANSLATION retained_intron ENSMUSG00000030795 Fus ENSMUST00000079045 ENSMUSP00000078054 TRANSLATION protein_coding - - - 122.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000030795 Fus ENSMUST00000137464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030795 Fus ENSMUST00000136289 - NO_TRANSLATION retained_intron ENSMUSG00000030795 Fus ENSMUST00000077609 ENSMUSP00000076801 TRANSLATION protein_coding - CCDS85425.1 1 517.0 4.0 6.31 1.2 89.8 0.0 -4,-5 0.9027 9 13.0 ALTERNATIVE:2 ENSMUSG00000030795 Fus ENSMUST00000172755 - NO_TRANSLATION retained_intron ENSMUSG00000030795 Fus ENSMUST00000128851 - NO_TRANSLATION retained_intron ENSMUSG00000030795 Fus ENSMUST00000174632 ENSMUSP00000133820 TRANSLATION protein_coding start/stop - 5 130.0 4.0 3.25 0.0 80.2 0.0 -4,-5 0.0005 8 -2.0 MINOR ENSMUSG00000030795 Fus ENSMUST00000154843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030795 Fus ENSMUST00000106251 ENSMUSP00000101858 TRANSLATION protein_coding - CCDS21886.1 1 518.0 4.0 6.31 1.2 89.8 0.0 -4,-5 1.0 9 13.0 PRINCIPAL:4 ENSMUSG00000030795 Fus ENSMUST00000205261 - NO_TRANSLATION retained_intron ENSMUSG00000036744 Or2ag2b ENSMUST00000166880 ENSMUSP00000130958 TRANSLATION protein_coding - CCDS21672.1 1 316.0 0.0 1.0 9.9 156.6 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036744 Or2ag2b ENSMUST00000075414 ENSMUSP00000074868 TRANSLATION protein_coding - CCDS21672.1 1 316.0 0.0 1.0 9.9 156.6 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036744 Or2ag2b ENSMUST00000217739 ENSMUSP00000151783 TRANSLATION protein_coding - CCDS21672.1 1 316.0 0.0 1.0 9.9 156.6 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091205 Vmn2r71 ENSMUST00000208545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091205 Vmn2r71 ENSMUST00000172338 ENSMUSP00000132337 TRANSLATION protein_coding - - 5 851.0 4.0 2.156 0.0 376.2 0.0 -2,-5 0.8319 - 16.0 PRINCIPAL:1 ENSMUSG00000091205 Vmn2r71 ENSMUST00000208273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032737 Inppl1 ENSMUST00000035836 ENSMUSP00000048057 TRANSLATION protein_coding - CCDS21515.1 1 1257.0 0.0 17.17 3.4 129.9 0.0 -4,-7 1.0 29 13.0 PRINCIPAL:1 ENSMUSG00000032737 Inppl1 ENSMUST00000186316 ENSMUSP00000147394 TRANSLATION protein_coding start - 1 603.0 0.0 8.05 0.0 0.0 0.0 -4,-7 0.0 14 -2.0 MINOR ENSMUSG00000032737 Inppl1 ENSMUST00000211514 - NO_TRANSLATION retained_intron ENSMUSG00000032737 Inppl1 ENSMUST00000209861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032737 Inppl1 ENSMUST00000209481 - NO_TRANSLATION retained_intron ENSMUSG00000032737 Inppl1 ENSMUST00000211436 - NO_TRANSLATION retained_intron ENSMUSG00000032737 Inppl1 ENSMUST00000185929 ENSMUSP00000139910 TRANSLATION protein_coding stop - 1 1166.0 0.0 15.42 0.0 96.2 0.0 -4,-7 0.0191 27 -2.0 MINOR ENSMUSG00000032737 Inppl1 ENSMUST00000165052 ENSMUSP00000132883 TRANSLATION protein_coding - CCDS21515.1 1 1257.0 0.0 17.17 3.4 129.9 0.0 -4,-7 1.0 29 13.0 PRINCIPAL:1 ENSMUSG00000032737 Inppl1 ENSMUST00000210116 ENSMUSP00000148066 TRANSLATION protein_coding start/stop - 5 276.0 0.0 7.828 0.0 0.0 0.0 -4,-7 0.0001 4 -2.0 MINOR ENSMUSG00000094187 Vmn1r170 ENSMUST00000170166 ENSMUSP00000127655 TRANSLATION protein_coding - CCDS52133.1 - 304.0 0.0 0.0 0.4 68.6 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030611 Mrps11 ENSMUST00000123706 - NO_TRANSLATION retained_intron ENSMUSG00000030611 Mrps11 ENSMUST00000133553 ENSMUSP00000146020 TRANSLATION nonsense_mediated_decay - - 1 58.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0176 - -2.0 MINOR ENSMUSG00000030611 Mrps11 ENSMUST00000032840 ENSMUSP00000032840 TRANSLATION protein_coding - CCDS21374.1 1 191.0 0.0 3.75 8.3 0.0 0.0 -4,0 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000030611 Mrps11 ENSMUST00000132922 - NO_TRANSLATION retained_intron ENSMUSG00000030611 Mrps11 ENSMUST00000136001 - NO_TRANSLATION retained_intron ENSMUSG00000030611 Mrps11 ENSMUST00000133304 - NO_TRANSLATION retained_intron ENSMUSG00000090864 Vmn2r40 ENSMUST00000171942 ENSMUSP00000132332 TRANSLATION protein_coding - CCDS57487.1 5 852.0 4.0 2.25 0.1 385.0 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000059273 Zc3h4 ENSMUST00000214735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059273 Zc3h4 ENSMUST00000209289 ENSMUSP00000147665 TRANSLATION protein_coding - - 5 1180.0 12.0 3.1 0.0 21.1 0.0 -4,-5 0.9625 21 14.0 PRINCIPAL:2 ENSMUSG00000059273 Zc3h4 ENSMUST00000098789 ENSMUSP00000096386 TRANSLATION protein_coding - CCDS52040.1 5 1255.0 12.0 3.1 0.4 21.1 0.0 -4,-5 0.6352 22 14.0 ALTERNATIVE:2 ENSMUSG00000059273 Zc3h4 ENSMUST00000209374 - NO_TRANSLATION retained_intron ENSMUSG00000031097 Tnni2 ENSMUST00000145287 ENSMUSP00000121819 TRANSLATION protein_coding stop - 3 135.0 0.0 3.5 0.0 142.8 0.0 -4,-6 0.001 9 -2.0 MINOR ENSMUSG00000031097 Tnni2 ENSMUST00000105973 ENSMUSP00000101593 TRANSLATION protein_coding start - 3 190.0 0.0 5.1 0.0 154.0 0.0 -4,-2 0.0428 8 -2.0 MINOR ENSMUSG00000031097 Tnni2 ENSMUST00000211192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031097 Tnni2 ENSMUST00000105971 ENSMUSP00000101591 TRANSLATION protein_coding - CCDS40192.1 2 182.0 0.0 5.0 23.2 159.0 0.0 -4,-6 1.0 10 15.802 PRINCIPAL:1 ENSMUSG00000031097 Tnni2 ENSMUST00000129618 - NO_TRANSLATION retained_intron ENSMUSG00000031097 Tnni2 ENSMUST00000210239 ENSMUSP00000147719 TRANSLATION protein_coding start/stop - 5 172.0 0.0 5.0 0.0 149.6 0.0 -4,-7 0.0538 8 -2.0 MINOR ENSMUSG00000031097 Tnni2 ENSMUST00000131034 - NO_TRANSLATION retained_intron ENSMUSG00000031097 Tnni2 ENSMUST00000149529 ENSMUSP00000122733 TRANSLATION protein_coding - CCDS40192.1 2 182.0 0.0 5.0 23.2 159.0 0.0 -4,-6 1.0 10 15.802 PRINCIPAL:1 ENSMUSG00000056144 Trim34a ENSMUST00000106848 ENSMUSP00000102461 TRANSLATION protein_coding - CCDS52342.1 1 485.0 16.0 3.992 6.5 100.1 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000056144 Trim34a ENSMUST00000106849 ENSMUSP00000102462 TRANSLATION protein_coding - CCDS52342.1 1 485.0 16.0 3.992 6.5 100.1 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000056144 Trim34a ENSMUST00000060315 ENSMUSP00000055058 TRANSLATION protein_coding - CCDS52342.1 1 485.0 16.0 3.992 6.5 100.1 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000096002 Vmn2r53 ENSMUST00000233892 ENSMUSP00000156838 TRANSLATION protein_coding - - - 878.0 0.0 2.88 0.0 454.9 7.0 2,-2 0.9249 1 8.0 PRINCIPAL:2 ENSMUSG00000096002 Vmn2r53 ENSMUST00000232701 ENSMUSP00000156421 TRANSLATION nonsense_mediated_decay - - - 179.0 0.0 1.06 0.0 42.9 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000096002 Vmn2r53 ENSMUST00000170412 ENSMUSP00000126979 TRANSLATION protein_coding - CCDS52018.1 5 806.0 0.0 2.72 0.0 454.9 7.0 -4,-6 0.3691 1 7.664 ALTERNATIVE:2 ENSMUSG00000052508 Or12j5 ENSMUST00000215340 ENSMUSP00000149744 TRANSLATION protein_coding - CCDS21979.1 5 307.0 0.0 2.0 8.3 161.6 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052508 Or12j5 ENSMUST00000209873 ENSMUSP00000148246 TRANSLATION protein_coding stop - 3 77.0 0.0 1.0 0.0 27.0 2.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052508 Or12j5 ENSMUST00000215768 ENSMUSP00000149758 TRANSLATION protein_coding - CCDS21979.1 5 307.0 0.0 2.0 8.3 161.6 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052508 Or12j5 ENSMUST00000064392 ENSMUSP00000067699 TRANSLATION protein_coding - CCDS21979.1 1 307.0 0.0 2.0 8.3 161.6 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052508 Or12j5 ENSMUST00000211326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035279 Ssc5d ENSMUST00000207310 - NO_TRANSLATION retained_intron ENSMUSG00000035279 Ssc5d ENSMUST00000057612 ENSMUSP00000052126 TRANSLATION protein_coding - CCDS20750.1 1 1371.0 10.0 4.0 0.0 511.3 0.0 3,-1 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000073955 Or52s1 ENSMUST00000210686 ENSMUSP00000147588 TRANSLATION protein_coding - - - 316.0 0.0 1.0 8.9 352.8 8.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073955 Or52s1 ENSMUST00000098206 ENSMUSP00000095807 TRANSLATION protein_coding - CCDS21565.1 - 327.0 0.0 1.0 4.3 352.8 8.0 -4,-7 0.8485 - 13.254 MINOR ENSMUSG00000052305 Hbb-bs ENSMUST00000153218 ENSMUSP00000115607 TRANSLATION protein_coding stop - 2 103.0 16.0 2.0 0.0 93.8 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000052305 Hbb-bs ENSMUST00000131960 - NO_TRANSLATION retained_intron ENSMUSG00000052305 Hbb-bs ENSMUST00000023934 ENSMUSP00000023934 TRANSLATION protein_coding - CCDS52339.1 1 147.0 20.0 3.0 30.9 103.5 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000035285 Nat14 ENSMUST00000047309 ENSMUSP00000045354 TRANSLATION protein_coding - CCDS20749.1 1 206.0 19.0 1.162 9.0 24.9 3.0 -4,-6 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000035285 Nat14 ENSMUST00000207687 ENSMUSP00000147229 TRANSLATION protein_coding - CCDS20749.1 1 206.0 19.0 1.162 9.0 24.9 3.0 -4,-6 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000035285 Nat14 ENSMUST00000208754 ENSMUSP00000146593 TRANSLATION protein_coding stop - 2 65.0 0.0 0.432 0.0 0.0 1.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000035285 Nat14 ENSMUST00000207527 ENSMUSP00000146765 TRANSLATION protein_coding stop - 3 154.0 11.0 1.082 0.0 23.6 3.0 -4,-6 0.0266 2 -2.0 MINOR ENSMUSG00000035285 Nat14 ENSMUST00000207506 ENSMUSP00000146577 TRANSLATION protein_coding stop - 3 121.0 0.0 0.682 0.0 0.0 3.0 -4,-6 0.0013 1 -2.0 MINOR ENSMUSG00000035632 Cnot3 ENSMUST00000206287 ENSMUSP00000145641 TRANSLATION protein_coding stop - 3 100.0 0.0 0.0 0.0 168.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000035632 Cnot3 ENSMUST00000038913 ENSMUSP00000039098 TRANSLATION protein_coding - CCDS20721.1 1 751.0 0.0 3.8 7.6 455.8 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000035632 Cnot3 ENSMUST00000132344 ENSMUSP00000117297 TRANSLATION protein_coding start/stop - 5 340.0 0.0 0.0 0.0 245.4 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000035632 Cnot3 ENSMUST00000143085 - NO_TRANSLATION retained_intron ENSMUSG00000035632 Cnot3 ENSMUST00000129973 - NO_TRANSLATION retained_intron ENSMUSG00000035632 Cnot3 ENSMUST00000206331 - NO_TRANSLATION retained_intron ENSMUSG00000035632 Cnot3 ENSMUST00000160200 ENSMUSP00000124810 TRANSLATION protein_coding start - 5 88.0 0.0 1.5 0.0 74.4 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000035632 Cnot3 ENSMUST00000135977 ENSMUSP00000118822 TRANSLATION nonsense_mediated_decay start - 5 103.0 0.0 0.0 0.0 102.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030556 Lrrc28 ENSMUST00000191035 ENSMUSP00000140382 TRANSLATION nonsense_mediated_decay - - 3 151.0 0.0 2.98 0.0 31.2 0.0 -4,-5 0.0004 1 -2.0 MINOR ENSMUSG00000030556 Lrrc28 ENSMUST00000053950 ENSMUSP00000052177 TRANSLATION protein_coding - CCDS21351.1 1 367.0 0.0 6.33 22.2 75.6 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000030556 Lrrc28 ENSMUST00000189836 ENSMUSP00000139606 TRANSLATION protein_coding stop - 2 114.0 0.0 2.344 0.0 0.0 0.0 -4,-5 0.0001 1 -2.0 MINOR ENSMUSG00000030556 Lrrc28 ENSMUST00000188971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030556 Lrrc28 ENSMUST00000190770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030556 Lrrc28 ENSMUST00000191386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030556 Lrrc28 ENSMUST00000190276 ENSMUSP00000140972 TRANSLATION protein_coding stop - 3 159.0 0.0 3.47 0.0 54.4 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000030556 Lrrc28 ENSMUST00000187953 ENSMUSP00000140207 TRANSLATION nonsense_mediated_decay - - 5 61.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030556 Lrrc28 ENSMUST00000032775 ENSMUSP00000032775 TRANSLATION protein_coding - CCDS52269.1 1 154.0 0.0 3.205 0.0 56.0 0.0 -4,-5 0.0063 1 4.446 MINOR ENSMUSG00000030556 Lrrc28 ENSMUST00000190115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030556 Lrrc28 ENSMUST00000191062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030556 Lrrc28 ENSMUST00000185818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003505 Psg18 ENSMUST00000003597 ENSMUSP00000003597 TRANSLATION protein_coding - CCDS20869.1 1 476.0 0.0 4.098 0.1 157.7 0.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000003505 Psg18 ENSMUST00000182983 ENSMUSP00000138759 TRANSLATION protein_coding start - 3 136.0 0.0 2.0 0.0 43.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003505 Psg18 ENSMUST00000098783 ENSMUSP00000096380 TRANSLATION protein_coding - CCDS52050.1 1 263.0 0.0 2.798 0.0 87.5 0.0 -4,-7 0.0119 - 5.19 MINOR ENSMUSG00000003505 Psg18 ENSMUST00000183222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025504 Eps8l2 ENSMUST00000140025 - NO_TRANSLATION retained_intron ENSMUSG00000025504 Eps8l2 ENSMUST00000155729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025504 Eps8l2 ENSMUST00000136240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025504 Eps8l2 ENSMUST00000210158 - NO_TRANSLATION retained_intron ENSMUSG00000025504 Eps8l2 ENSMUST00000210251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025504 Eps8l2 ENSMUST00000145108 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025504 Eps8l2 ENSMUST00000127501 - NO_TRANSLATION retained_intron ENSMUSG00000025504 Eps8l2 ENSMUST00000026577 ENSMUSP00000026577 TRANSLATION protein_coding - CCDS22009.1 1 729.0 2.0 6.875 0.1 204.4 0.0 -4,-7 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000025504 Eps8l2 ENSMUST00000133669 - NO_TRANSLATION retained_intron ENSMUSG00000025504 Eps8l2 ENSMUST00000136736 - NO_TRANSLATION retained_intron ENSMUSG00000025504 Eps8l2 ENSMUST00000143633 ENSMUSP00000120726 TRANSLATION protein_coding stop - 5 80.0 1.0 0.975 0.0 25.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000025504 Eps8l2 ENSMUST00000146042 - NO_TRANSLATION retained_intron ENSMUSG00000073950 Or52ab4 ENSMUST00000214329 ENSMUSP00000149281 TRANSLATION protein_coding - CCDS21568.1 5 315.0 0.0 1.0 12.8 314.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073950 Or52ab4 ENSMUST00000098201 ENSMUSP00000095803 TRANSLATION protein_coding - CCDS21568.1 - 315.0 0.0 1.0 12.8 314.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073962 Or51a7 ENSMUST00000098213 ENSMUSP00000143172 TRANSLATION protein_coding - CCDS80768.1 5 312.0 0.0 1.33 8.5 376.5 6.0 -4,-5 1.0 - 14.082 PRINCIPAL:1 ENSMUSG00000073962 Or51a7 ENSMUST00000185326 ENSMUSP00000142459 TRANSLATION protein_coding stop - 5 309.0 0.0 1.0 11.5 377.5 6.0 -4,-5 0.8669 - -2.0 MINOR ENSMUSG00000025497 Cdhr5 ENSMUST00000210386 - NO_TRANSLATION retained_intron ENSMUSG00000025497 Cdhr5 ENSMUST00000210124 ENSMUSP00000148123 TRANSLATION protein_coding start/stop - 5 333.0 0.0 1.366 0.0 0.0 1.0 -4,-5 0.0438 4 -2.0 MINOR ENSMUSG00000025497 Cdhr5 ENSMUST00000080654 ENSMUSP00000079484 TRANSLATION protein_coding - CCDS22006.1 1 669.0 10.0 6.566 0.0 0.0 1.0 3,-2 1.0 8 12.0 PRINCIPAL:2 ENSMUSG00000025497 Cdhr5 ENSMUST00000167263 ENSMUSP00000127292 TRANSLATION protein_coding - CCDS52442.1 1 831.0 10.0 6.566 0.0 0.0 1.0 3,-2 0.5132 8 12.0 ALTERNATIVE:2 ENSMUSG00000025497 Cdhr5 ENSMUST00000210773 ENSMUSP00000147472 TRANSLATION nonsense_mediated_decay start - 5 131.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0174 2 -2.0 MINOR ENSMUSG00000091930 Vmn2r52 ENSMUST00000164918 ENSMUSP00000129352 TRANSLATION protein_coding - CCDS52008.1 5 852.0 4.0 2.75 0.1 382.0 8.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091930 Vmn2r52 ENSMUST00000232927 ENSMUSP00000156503 TRANSLATION protein_coding - - - 720.0 2.0 2.35 0.0 288.1 5.0 1,-4 0.0118 - 7.496 MINOR ENSMUSG00000063297 Luzp2 ENSMUST00000082373 ENSMUSP00000080979 TRANSLATION protein_coding - CCDS39970.1 1 345.0 0.0 6.3 6.0 0.0 0.0 0,-3 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000063297 Luzp2 ENSMUST00000206923 - NO_TRANSLATION retained_intron ENSMUSG00000070563 Spaca4 ENSMUST00000094424 ENSMUSP00000091991 TRANSLATION protein_coding - CCDS21262.1 - 127.0 0.0 1.0 1.5 23.2 0.0 4,-1 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000094950 Vmn2r66 ENSMUST00000232837 ENSMUSP00000156807 TRANSLATION protein_coding - - - 852.0 5.0 2.1525 0.0 348.9 11.0 -4,-7 0.1551 - 11.582 MINOR ENSMUSG00000094950 Vmn2r66 ENSMUST00000124773 ENSMUSP00000122645 TRANSLATION protein_coding - CCDS21422.2 5 851.0 5.0 2.4 0.0 352.4 11.0 0,-4 0.8378 - 13.0 ALTERNATIVE:2 ENSMUSG00000094950 Vmn2r66 ENSMUST00000233739 ENSMUSP00000156850 TRANSLATION protein_coding - - - 858.0 5.0 2.1525 0.0 348.9 11.0 0,-4 0.1857 - 11.582 MINOR ENSMUSG00000094950 Vmn2r66 ENSMUST00000233725 ENSMUSP00000156675 TRANSLATION protein_coding - - - 845.0 5.0 2.4 0.0 352.4 11.0 -4,-7 0.8534 - 13.0 PRINCIPAL:4 ENSMUSG00000094950 Vmn2r66 ENSMUST00000233111 ENSMUSP00000156875 TRANSLATION nonsense_mediated_decay - - - 69.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0038 - -2.0 MINOR ENSMUSG00000096209 Or5p81 ENSMUST00000217170 ENSMUSP00000149693 TRANSLATION protein_coding - CCDS21724.1 5 314.0 0.0 1.0 11.4 166.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096209 Or5p81 ENSMUST00000216331 ENSMUSP00000149492 TRANSLATION protein_coding - CCDS21724.1 5 314.0 0.0 1.0 11.4 166.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096209 Or5p81 ENSMUST00000076289 ENSMUSP00000075637 TRANSLATION protein_coding - CCDS21724.1 - 314.0 0.0 1.0 11.4 166.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096209 Or5p81 ENSMUST00000213979 ENSMUSP00000149237 TRANSLATION protein_coding - CCDS21724.1 5 314.0 0.0 1.0 11.4 166.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073997 Or2at1 ENSMUST00000219663 ENSMUSP00000151365 TRANSLATION protein_coding - CCDS21487.1 5 321.0 0.0 1.0 6.6 211.5 6.0 -3,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073997 Or2at1 ENSMUST00000220001 ENSMUSP00000151473 TRANSLATION protein_coding - CCDS21487.1 5 321.0 0.0 1.0 6.6 211.5 6.0 -3,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073997 Or2at1 ENSMUST00000098263 ENSMUSP00000095863 TRANSLATION protein_coding - CCDS21487.1 - 321.0 0.0 1.0 6.6 211.5 6.0 -3,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095730 Vmn2r29 ENSMUST00000209613 - NO_TRANSLATION retained_intron ENSMUSG00000095730 Vmn2r29 ENSMUST00000211433 ENSMUSP00000147896 TRANSLATION nonsense_mediated_decay start - 3 110.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095730 Vmn2r29 ENSMUST00000170922 ENSMUSP00000131990 TRANSLATION protein_coding - CCDS51993.1 5 852.0 4.0 3.014 0.1 388.4 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078591 Hs3st4 ENSMUST00000106437 ENSMUSP00000102045 TRANSLATION protein_coding - CCDS57584.1 3 449.0 20.0 1.2 0.4 148.5 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078779 Zfp59 ENSMUST00000108331 ENSMUSP00000103968 TRANSLATION protein_coding - CCDS39851.1 2 653.0 64.0 0.8 0.1 321.2 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000078779 Zfp59 ENSMUST00000205701 ENSMUSP00000145671 TRANSLATION protein_coding - CCDS39851.1 1 653.0 64.0 0.8 0.1 321.2 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000025439 Clns1a ENSMUST00000205667 - NO_TRANSLATION retained_intron ENSMUSG00000025439 Clns1a ENSMUST00000026506 ENSMUSP00000026506 TRANSLATION protein_coding - CCDS21462.1 1 241.0 0.0 3.2 2.7 118.3 0.0 -4,-7 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000025439 Clns1a ENSMUST00000148125 - NO_TRANSLATION retained_intron ENSMUSG00000078813 Leng1 ENSMUST00000019878 ENSMUSP00000019878 TRANSLATION protein_coding - CCDS20722.1 1 261.0 0.0 0.0 6.0 30.3 0.0 -4,-7 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000002205 Vrk3 ENSMUST00000134750 - NO_TRANSLATION retained_intron ENSMUSG00000002205 Vrk3 ENSMUST00000002275 ENSMUSP00000002275 TRANSLATION protein_coding - CCDS21214.1 1 453.0 4.0 8.56 2.1 64.8 0.0 -4,-6 1.0 13 17.0 PRINCIPAL:1 ENSMUSG00000002205 Vrk3 ENSMUST00000135783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002205 Vrk3 ENSMUST00000147952 ENSMUSP00000130331 TRANSLATION nonsense_mediated_decay - - 1 170.0 4.0 1.0 0.0 29.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000002205 Vrk3 ENSMUST00000208083 - NO_TRANSLATION retained_intron ENSMUSG00000002205 Vrk3 ENSMUST00000165957 ENSMUSP00000131704 TRANSLATION protein_coding stop - 5 204.0 4.0 2.13 0.0 29.7 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000002205 Vrk3 ENSMUST00000144515 ENSMUSP00000119073 TRANSLATION protein_coding stop - 5 175.0 4.0 2.21 0.0 29.7 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000002205 Vrk3 ENSMUST00000125705 ENSMUSP00000122114 TRANSLATION protein_coding stop - 3 46.0 4.0 0.0 0.0 29.7 0.0 -4,-6 0.001 1 -2.0 MINOR ENSMUSG00000002205 Vrk3 ENSMUST00000136069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002205 Vrk3 ENSMUST00000171821 ENSMUSP00000132748 TRANSLATION protein_coding stop - 3 119.0 4.0 0.0 0.0 29.7 0.0 -4,-6 0.001 3 -2.0 MINOR ENSMUSG00000038580 Sct ENSMUST00000167790 ENSMUSP00000128729 TRANSLATION protein_coding - CCDS40184.1 1 133.0 0.0 1.0 0.0 25.9 0.0 3,-2 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000038580 Sct ENSMUST00000046156 ENSMUSP00000041519 TRANSLATION protein_coding - CCDS72069.1 1 139.0 0.0 1.0 0.0 25.9 0.0 3,-2 0.4653 2 8.0 ALTERNATIVE:2 ENSMUSG00000038580 Sct ENSMUST00000211667 ENSMUSP00000147780 TRANSLATION protein_coding - CCDS85457.1 2 77.0 0.0 1.0 0.0 25.9 0.0 3,-2 0.4086 1 8.0 ALTERNATIVE:2 ENSMUSG00000038580 Sct ENSMUST00000210928 - NO_TRANSLATION retained_intron ENSMUSG00000094757 Vmn1r242 ENSMUST00000168580 ENSMUSP00000131047 TRANSLATION protein_coding - CCDS52071.1 - 306.0 0.0 0.0 0.4 58.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038644 Pold1 ENSMUST00000151793 ENSMUSP00000117157 TRANSLATION nonsense_mediated_decay - - 5 981.0 20.0 18.55 0.0 702.3 0.0 -4,-6 0.0383 25 -2.0 MINOR ENSMUSG00000038644 Pold1 ENSMUST00000136225 - NO_TRANSLATION retained_intron ENSMUSG00000038644 Pold1 ENSMUST00000138746 - NO_TRANSLATION retained_intron ENSMUSG00000038644 Pold1 ENSMUST00000154783 - NO_TRANSLATION retained_intron ENSMUSG00000038644 Pold1 ENSMUST00000049343 ENSMUSP00000039776 TRANSLATION protein_coding - CCDS21210.1 1 1105.0 20.0 24.05 5.6 835.1 0.0 -4,-6 1.0 34 20.0 PRINCIPAL:1 ENSMUSG00000038644 Pold1 ENSMUST00000141742 - NO_TRANSLATION retained_intron ENSMUSG00000038644 Pold1 ENSMUST00000132268 - NO_TRANSLATION retained_intron ENSMUSG00000038644 Pold1 ENSMUST00000145956 ENSMUSP00000117844 TRANSLATION protein_coding stop - 5 153.0 0.0 1.8 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038644 Pold1 ENSMUST00000147503 - NO_TRANSLATION retained_intron ENSMUSG00000030366 Ceacam12 ENSMUST00000032520 ENSMUSP00000032520 TRANSLATION protein_coding - CCDS20867.1 1 300.0 0.0 0.8 0.1 33.9 0.0 -2,-6 0.1652 - 10.086 MINOR ENSMUSG00000030366 Ceacam12 ENSMUST00000108487 ENSMUSP00000104127 TRANSLATION protein_coding - CCDS52047.1 1 283.0 0.0 1.175 0.0 33.9 0.0 -2,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030366 Ceacam12 ENSMUST00000108483 ENSMUSP00000104123 TRANSLATION protein_coding - CCDS52048.1 1 262.0 0.0 0.8 0.3 33.9 0.0 -2,-6 0.1592 - 10.086 MINOR ENSMUSG00000030851 Ldhc ENSMUST00000148565 ENSMUSP00000114206 TRANSLATION protein_coding stop - 3 235.0 23.0 5.0 0.0 183.0 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000030851 Ldhc ENSMUST00000211784 ENSMUSP00000148038 TRANSLATION protein_coding - - 1 171.0 20.0 3.2 0.0 129.8 0.0 -4,-5 0.0 9 1.998 MINOR ENSMUSG00000030851 Ldhc ENSMUST00000126004 ENSMUSP00000115652 TRANSLATION protein_coding stop - 5 236.0 23.0 5.0 0.0 183.0 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000030851 Ldhc ENSMUST00000210585 ENSMUSP00000147492 TRANSLATION protein_coding - - 1 274.0 21.0 6.75 1.1 186.3 0.0 -4,-5 0.0031 18 9.334 MINOR ENSMUSG00000030851 Ldhc ENSMUST00000014545 ENSMUSP00000014545 TRANSLATION protein_coding - CCDS21290.1 1 332.0 26.0 7.75 27.9 242.1 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000050276 Mrgprg ENSMUST00000208986 ENSMUSP00000146374 TRANSLATION protein_coding stop - - 156.0 0.0 1.0 0.0 24.2 4.0 0,-4 0.0556 - -2.0 MINOR ENSMUSG00000050276 Mrgprg ENSMUST00000058092 ENSMUSP00000060411 TRANSLATION protein_coding - CCDS22045.1 1 289.0 0.0 1.8 1.5 24.2 7.0 0,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030603 Psmc4 ENSMUST00000126528 - NO_TRANSLATION retained_intron ENSMUSG00000030603 Psmc4 ENSMUST00000134486 - NO_TRANSLATION retained_intron ENSMUSG00000030603 Psmc4 ENSMUST00000140053 ENSMUSP00000147018 TRANSLATION protein_coding - - 5 387.0 12.0 9.35 1.0 149.8 0.0 -4,-5 0.0571 16 16.002 MINOR ENSMUSG00000030603 Psmc4 ENSMUST00000138512 - NO_TRANSLATION retained_intron ENSMUSG00000030603 Psmc4 ENSMUST00000032824 ENSMUSP00000032824 TRANSLATION protein_coding - CCDS21034.1 1 418.0 12.0 10.35 31.0 149.8 0.0 -4,-5 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000030603 Psmc4 ENSMUST00000135482 - NO_TRANSLATION retained_intron ENSMUSG00000038663 Fsd2 ENSMUST00000042318 ENSMUSP00000047775 TRANSLATION protein_coding - CCDS80743.1 2 716.0 4.0 3.352 0.0 110.2 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000046865 Fbl ENSMUST00000208259 - NO_TRANSLATION retained_intron ENSMUSG00000046865 Fbl ENSMUST00000207956 - NO_TRANSLATION retained_intron ENSMUSG00000046865 Fbl ENSMUST00000207384 - NO_TRANSLATION retained_intron ENSMUSG00000046865 Fbl ENSMUST00000207397 - NO_TRANSLATION retained_intron ENSMUSG00000046865 Fbl ENSMUST00000042405 ENSMUSP00000037613 TRANSLATION protein_coding - CCDS21036.1 1 327.0 14.0 6.16 0.1 362.1 0.0 -4,-6 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000046865 Fbl ENSMUST00000208967 ENSMUSP00000146927 TRANSLATION protein_coding stop - 5 85.0 0.0 1.33 0.0 33.1 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000030924 Rexo5 ENSMUST00000207042 ENSMUSP00000146631 TRANSLATION protein_coding start - 5 124.0 1.0 1.48 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030924 Rexo5 ENSMUST00000208789 ENSMUSP00000146928 TRANSLATION nonsense_mediated_decay start - 3 85.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030924 Rexo5 ENSMUST00000155938 - NO_TRANSLATION retained_intron ENSMUSG00000030924 Rexo5 ENSMUST00000138689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030924 Rexo5 ENSMUST00000106520 ENSMUSP00000102130 TRANSLATION protein_coding - - 5 759.0 3.0 4.814 0.0 27.0 0.0 -4,-5 0.7817 - 11.0 PRINCIPAL:2 ENSMUSG00000030924 Rexo5 ENSMUST00000149132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030924 Rexo5 ENSMUST00000033218 ENSMUSP00000033218 TRANSLATION protein_coding - CCDS21787.1 1 479.0 2.0 2.3 0.0 0.0 0.0 -4,-5 0.0146 - 2.973 MINOR ENSMUSG00000030924 Rexo5 ENSMUST00000137015 - NO_TRANSLATION retained_intron ENSMUSG00000030924 Rexo5 ENSMUST00000084644 ENSMUSP00000081694 TRANSLATION protein_coding - CCDS21788.1 1 445.0 3.0 4.748 0.0 27.0 0.0 -4,-5 0.1802 - 10.868 ALTERNATIVE:2 ENSMUSG00000030924 Rexo5 ENSMUST00000133758 ENSMUSP00000121086 TRANSLATION nonsense_mediated_decay - - 1 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030924 Rexo5 ENSMUST00000151248 - NO_TRANSLATION retained_intron ENSMUSG00000051048 P4ha3 ENSMUST00000057023 ENSMUSP00000055297 TRANSLATION protein_coding - CCDS21496.1 1 542.0 3.0 7.325 3.3 156.1 0.0 1,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000051048 P4ha3 ENSMUST00000208565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051048 P4ha3 ENSMUST00000139790 ENSMUSP00000117015 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.002 - -2.0 MINOR ENSMUSG00000051048 P4ha3 ENSMUST00000148620 - NO_TRANSLATION retained_intron ENSMUSG00000051048 P4ha3 ENSMUST00000138465 ENSMUSP00000119159 TRANSLATION protein_coding start - 1 388.0 3.0 5.665 0.0 30.1 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000062044 Lmtk3 ENSMUST00000211127 ENSMUSP00000148018 TRANSLATION nonsense_mediated_decay start - 3 77.0 2.0 1.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000062044 Lmtk3 ENSMUST00000209617 ENSMUSP00000148041 TRANSLATION protein_coding - - 1 1450.0 20.0 6.63 0.1 211.8 1.0 0,2 1.0 19 14.0 PRINCIPAL:4 ENSMUSG00000062044 Lmtk3 ENSMUST00000072580 ENSMUSP00000072388 TRANSLATION protein_coding - CCDS39961.1 1 1424.0 20.0 6.63 0.0 211.8 1.0 3,-2 0.8793 19 14.0 ALTERNATIVE:2 ENSMUSG00000062044 Lmtk3 ENSMUST00000211609 ENSMUSP00000148070 TRANSLATION protein_coding stop - 3 161.0 8.0 1.25 0.0 0.0 1.0 3,-2 0.0075 - -2.0 MINOR ENSMUSG00000062044 Lmtk3 ENSMUST00000211309 - NO_TRANSLATION retained_intron ENSMUSG00000062044 Lmtk3 ENSMUST00000209351 ENSMUSP00000147390 TRANSLATION nonsense_mediated_decay start - 5 144.0 5.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062044 Lmtk3 ENSMUST00000120005 ENSMUSP00000112592 TRANSLATION protein_coding - CCDS39961.1 1 1424.0 20.0 6.63 0.0 211.8 1.0 3,-2 0.8793 19 14.0 ALTERNATIVE:2 ENSMUSG00000062044 Lmtk3 ENSMUST00000233503 ENSMUSP00000156458 TRANSLATION protein_coding - - - 1446.0 20.0 6.63 0.0 211.8 1.0 3,-2 0.7042 14 14.0 ALTERNATIVE:2 ENSMUSG00000062044 Lmtk3 ENSMUST00000209701 ENSMUSP00000147480 TRANSLATION protein_coding stop - 3 202.0 11.0 2.58 0.0 42.7 1.0 3,-2 0.0044 2 -2.0 MINOR ENSMUSG00000030539 Sema4b ENSMUST00000107383 - NO_TRANSLATION retained_intron ENSMUSG00000030539 Sema4b ENSMUST00000123023 - NO_TRANSLATION retained_intron ENSMUSG00000030539 Sema4b ENSMUST00000205822 ENSMUSP00000145622 TRANSLATION protein_coding - CCDS21391.1 1 823.0 0.0 8.09 0.1 516.6 1.0 3,-4 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000030539 Sema4b ENSMUST00000032754 ENSMUSP00000032754 TRANSLATION protein_coding - CCDS21391.1 1 823.0 0.0 8.09 0.1 516.6 1.0 3,-4 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000019082 Slc25a22 ENSMUST00000136354 ENSMUSP00000118948 TRANSLATION protein_coding stop - 2 206.0 0.0 4.454 0.0 146.4 4.0 -4,-7 0.0024 7 -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000132635 - NO_TRANSLATION retained_intron ENSMUSG00000019082 Slc25a22 ENSMUST00000106007 ENSMUSP00000101629 TRANSLATION protein_coding - CCDS22013.1 1 323.0 0.0 8.194 9.7 212.7 6.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000019082 Slc25a22 ENSMUST00000150026 ENSMUSP00000133936 TRANSLATION protein_coding stop - 3 28.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000174095 ENSMUSP00000134355 TRANSLATION protein_coding start - 1 44.0 0.0 1.16 0.0 0.0 1.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000144174 - NO_TRANSLATION retained_intron ENSMUSG00000019082 Slc25a22 ENSMUST00000148100 - NO_TRANSLATION retained_intron ENSMUSG00000019082 Slc25a22 ENSMUST00000201710 ENSMUSP00000144231 TRANSLATION protein_coding - CCDS22013.1 5 323.0 0.0 8.194 9.7 212.7 6.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000019082 Slc25a22 ENSMUST00000124266 ENSMUSP00000122177 TRANSLATION nonsense_mediated_decay - - 1 103.0 0.0 3.24 0.0 89.2 4.0 -4,-7 0.0021 4 -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000133206 ENSMUSP00000138847 TRANSLATION protein_coding stop - 5 18.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000201822 ENSMUSP00000144213 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 2.24 0.0 66.6 4.0 -4,-7 0.0021 3 -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000201558 - NO_TRANSLATION retained_intron ENSMUSG00000019082 Slc25a22 ENSMUST00000202840 ENSMUSP00000144384 TRANSLATION protein_coding stop - 3 85.0 0.0 2.74 0.0 80.5 4.0 -4,-7 0.0021 3 -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000201127 ENSMUSP00000143911 TRANSLATION protein_coding stop - 5 196.0 0.0 4.124 0.0 117.1 4.0 -4,-7 0.0024 6 -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000106006 ENSMUSP00000101628 TRANSLATION protein_coding - - 5 229.0 0.0 7.004 0.1 170.9 5.0 -4,-7 0.0026 7 7.11 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000156002 - NO_TRANSLATION retained_intron ENSMUSG00000019082 Slc25a22 ENSMUST00000172654 ENSMUSP00000133928 TRANSLATION protein_coding stop - 5 63.0 0.0 2.094 0.0 39.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000019226 ENSMUSP00000019226 TRANSLATION protein_coding - CCDS22013.1 1 323.0 0.0 8.194 9.7 212.7 6.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000019082 Slc25a22 ENSMUST00000140602 - NO_TRANSLATION retained_intron ENSMUSG00000019082 Slc25a22 ENSMUST00000138865 ENSMUSP00000120721 TRANSLATION protein_coding stop - 5 222.0 0.0 5.114 0.0 149.0 4.0 -4,-7 0.0024 7 -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000201708 - NO_TRANSLATION retained_intron ENSMUSG00000019082 Slc25a22 ENSMUST00000153190 ENSMUSP00000144686 TRANSLATION protein_coding start - 3 99.0 0.0 2.014 0.0 25.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000133021 ENSMUSP00000133503 TRANSLATION protein_coding stop - 5 38.0 0.0 1.41 0.0 39.0 4.0 -4,-6 0.0021 1 -2.0 MINOR ENSMUSG00000019082 Slc25a22 ENSMUST00000201072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019082 Slc25a22 ENSMUST00000184518 ENSMUSP00000138924 TRANSLATION nonsense_mediated_decay - - 5 98.0 0.0 3.24 0.0 89.2 4.0 -4,-7 0.0021 4 -2.0 MINOR ENSMUSG00000036862 Dchs1 ENSMUST00000078482 ENSMUSP00000077574 TRANSLATION protein_coding - CCDS52351.1 5 3291.0 220.0 11.08 8.0 1316.1 0.0 1,-3 1.0 35 21.0 PRINCIPAL:1 ENSMUSG00000036862 Dchs1 ENSMUST00000140959 ENSMUSP00000147857 TRANSLATION nonsense_mediated_decay start - 3 50.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0071 - -2.0 MINOR ENSMUSG00000036862 Dchs1 ENSMUST00000154659 - NO_TRANSLATION retained_intron ENSMUSG00000094011 Vmn1r94 ENSMUST00000164526 ENSMUSP00000127861 TRANSLATION protein_coding - CCDS52068.1 - 305.0 0.0 0.0 0.4 54.2 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031004 Mki67 ENSMUST00000033310 ENSMUSP00000033310 TRANSLATION protein_coding - CCDS52421.1 5 3177.0 0.0 3.75 0.0 1925.9 0.0 -4,-6 1.0 85 12.0 PRINCIPAL:1 ENSMUSG00000031004 Mki67 ENSMUST00000211238 ENSMUSP00000147271 TRANSLATION protein_coding start/stop - 3 192.0 0.0 1.0 0.0 66.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000064223 Or2ag1b ENSMUST00000082091 ENSMUSP00000080740 TRANSLATION protein_coding - CCDS21666.1 - 315.0 0.0 1.0 6.6 158.9 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000064223 Or2ag1b ENSMUST00000216895 ENSMUSP00000151027 TRANSLATION protein_coding - CCDS21666.1 5 315.0 0.0 1.0 6.6 158.9 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000064223 Or2ag1b ENSMUST00000052535 ENSMUSP00000057180 TRANSLATION protein_coding - CCDS21666.1 3 315.0 0.0 1.0 6.6 158.9 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000064223 Or2ag1b ENSMUST00000216118 ENSMUSP00000150217 TRANSLATION protein_coding - CCDS21666.1 5 315.0 0.0 1.0 6.6 158.9 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000034538 Zfp418 ENSMUST00000209387 - NO_TRANSLATION retained_intron ENSMUSG00000034538 Zfp418 ENSMUST00000051435 ENSMUSP00000057159 TRANSLATION protein_coding - CCDS39756.1 1 652.0 56.0 1.0 0.1 364.0 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000045929 Gm20715 ENSMUST00000054781 ENSMUSP00000050428 TRANSLATION nonsense_mediated_decay,RT - - 2 95.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - -2.0 PRINCIPAL:1 ENSMUSG00000056782 Or52n2b ENSMUST00000217177 ENSMUSP00000150340 TRANSLATION protein_coding - CCDS40071.1 5 326.0 0.0 1.0 2.0 339.5 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056782 Or52n2b ENSMUST00000071362 ENSMUSP00000100470 TRANSLATION protein_coding - CCDS40071.1 - 326.0 0.0 1.0 2.0 339.5 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030946 Lhpp ENSMUST00000148669 ENSMUSP00000147404 TRANSLATION nonsense_mediated_decay - - 3 42.0 4.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030946 Lhpp ENSMUST00000033241 ENSMUSP00000033241 TRANSLATION protein_coding - CCDS21925.1 1 270.0 11.0 6.75 20.3 117.6 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000030946 Lhpp ENSMUST00000210168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030946 Lhpp ENSMUST00000209903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030946 Lhpp ENSMUST00000106170 ENSMUSP00000147970 TRANSLATION protein_coding - - 1 242.0 11.0 5.75 1.4 101.6 0.0 -4,-7 0.0224 5 15.126 MINOR ENSMUSG00000030946 Lhpp ENSMUST00000133969 ENSMUSP00000147386 TRANSLATION nonsense_mediated_decay start - 5 47.0 4.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030946 Lhpp ENSMUST00000130672 - NO_TRANSLATION retained_intron ENSMUSG00000030584 Dpf1 ENSMUST00000137848 ENSMUSP00000120956 TRANSLATION protein_coding start/stop - 3 143.0 3.0 2.45 0.0 59.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030584 Dpf1 ENSMUST00000108231 ENSMUSP00000103866 TRANSLATION protein_coding - - 5 398.0 21.0 7.04 4.6 160.9 0.0 -4,-5 0.5352 3 14.368 MINOR ENSMUSG00000030584 Dpf1 ENSMUST00000207677 - NO_TRANSLATION retained_intron ENSMUSG00000030584 Dpf1 ENSMUST00000049977 ENSMUSP00000054385 TRANSLATION protein_coding - CCDS21071.1 1 388.0 21.0 7.04 8.9 169.7 0.0 -4,-5 1.0 3 17.0 PRINCIPAL:4 ENSMUSG00000030584 Dpf1 ENSMUST00000108230 ENSMUSP00000103865 TRANSLATION protein_coding - - 5 353.0 17.0 6.45 1.0 160.9 0.0 -4,-5 0.0236 2 9.154 MINOR ENSMUSG00000030584 Dpf1 ENSMUST00000065181 ENSMUSP00000070539 TRANSLATION protein_coding - - 5 387.0 21.0 7.04 8.9 169.7 0.0 -4,-5 0.8598 3 17.0 ALTERNATIVE:1 ENSMUSG00000030584 Dpf1 ENSMUST00000128145 - NO_TRANSLATION retained_intron ENSMUSG00000030584 Dpf1 ENSMUST00000126169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030584 Dpf1 ENSMUST00000138993 - NO_TRANSLATION retained_intron ENSMUSG00000030584 Dpf1 ENSMUST00000154222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030584 Dpf1 ENSMUST00000142958 ENSMUSP00000117186 TRANSLATION protein_coding start/stop - 3 146.0 14.0 2.99 0.0 37.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000096467 Scgb2b19 ENSMUST00000179688 ENSMUSP00000136155 TRANSLATION protein_coding - CCDS59729.1 1 112.0 0.0 2.3 0.1 97.5 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078566 Bnip3 ENSMUST00000106112 ENSMUSP00000101718 TRANSLATION protein_coding - CCDS40168.1 1 187.0 0.0 1.5 6.8 269.2 2.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000078566 Bnip3 ENSMUST00000148970 - NO_TRANSLATION retained_intron ENSMUSG00000078566 Bnip3 ENSMUST00000141223 - NO_TRANSLATION retained_intron ENSMUSG00000078566 Bnip3 ENSMUST00000125359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078566 Bnip3 ENSMUST00000130500 ENSMUSP00000148170 TRANSLATION protein_coding - - 2 173.0 0.0 1.0 0.0 245.8 1.0 -4,-5 0.0021 4 8.598 MINOR ENSMUSG00000030815 Phkg2 ENSMUST00000151908 - NO_TRANSLATION retained_intron ENSMUSG00000030815 Phkg2 ENSMUST00000146383 ENSMUSP00000115593 TRANSLATION nonsense_mediated_decay - - 3 90.0 8.0 2.5 0.0 30.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030815 Phkg2 ENSMUST00000206818 ENSMUSP00000145834 TRANSLATION nonsense_mediated_decay start - 5 104.0 10.0 2.528 0.0 104.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000030815 Phkg2 ENSMUST00000154891 ENSMUSP00000116860 TRANSLATION nonsense_mediated_decay - - 5 87.0 8.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030815 Phkg2 ENSMUST00000138158 - NO_TRANSLATION retained_intron ENSMUSG00000030815 Phkg2 ENSMUST00000205633 ENSMUSP00000145927 TRANSLATION nonsense_mediated_decay - - 3 76.0 8.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030815 Phkg2 ENSMUST00000129457 - NO_TRANSLATION retained_intron ENSMUSG00000030815 Phkg2 ENSMUST00000149853 - NO_TRANSLATION retained_intron ENSMUSG00000030815 Phkg2 ENSMUST00000033086 ENSMUSP00000033086 TRANSLATION protein_coding - CCDS21869.1 1 406.0 19.0 8.49 11.8 267.2 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000030815 Phkg2 ENSMUST00000121004 ENSMUSP00000113533 TRANSLATION protein_coding - CCDS21869.1 5 406.0 19.0 8.49 11.8 267.2 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000030815 Phkg2 ENSMUST00000133621 - NO_TRANSLATION retained_intron ENSMUSG00000070822 Zscan18 ENSMUST00000210650 ENSMUSP00000147550 TRANSLATION protein_coding - CCDS52021.1 5 809.0 4.0 1.0 0.0 116.8 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000070822 Zscan18 ENSMUST00000211665 - NO_TRANSLATION retained_intron ENSMUSG00000070822 Zscan18 ENSMUST00000211392 ENSMUSP00000148239 TRANSLATION protein_coding - CCDS52021.1 5 809.0 4.0 1.0 0.0 116.8 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000070822 Zscan18 ENSMUST00000046245 ENSMUSP00000047088 TRANSLATION protein_coding - CCDS52021.1 5 809.0 4.0 1.0 0.0 116.8 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000070822 Zscan18 ENSMUST00000209869 - NO_TRANSLATION retained_intron ENSMUSG00000070822 Zscan18 ENSMUST00000210891 ENSMUSP00000147686 TRANSLATION nonsense_mediated_decay start - 3 87.0 0.0 1.0 0.0 100.8 0.0 -4,-7 0.0356 - -2.0 MINOR ENSMUSG00000025492 Ifitm3 ENSMUST00000026565 ENSMUSP00000026565 TRANSLATION protein_coding - CCDS21996.1 1 137.0 0.0 1.0 1.4 101.1 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000030888 Rrp8 ENSMUST00000033179 ENSMUSP00000033179 TRANSLATION protein_coding - CCDS21658.1 1 457.0 12.0 5.68 5.5 347.1 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000030888 Rrp8 ENSMUST00000148176 - NO_TRANSLATION retained_intron ENSMUSG00000030888 Rrp8 ENSMUST00000137902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030888 Rrp8 ENSMUST00000127738 ENSMUSP00000147906 TRANSLATION nonsense_mediated_decay start - 3 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030888 Rrp8 ENSMUST00000154852 - NO_TRANSLATION retained_intron ENSMUSG00000030888 Rrp8 ENSMUST00000098148 ENSMUSP00000095752 TRANSLATION protein_coding - CCDS57576.1 1 503.0 12.0 5.68 0.0 347.1 0.0 -4,-2 0.1905 5 18.0 MINOR ENSMUSG00000058638 Zfp110 ENSMUST00000148041 - NO_TRANSLATION retained_intron ENSMUSG00000058638 Zfp110 ENSMUST00000168247 ENSMUSP00000132060 TRANSLATION protein_coding - CCDS20814.1 5 832.0 20.0 0.4 0.0 343.2 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000058638 Zfp110 ENSMUST00000137718 - NO_TRANSLATION retained_intron ENSMUSG00000058638 Zfp110 ENSMUST00000004614 ENSMUSP00000004614 TRANSLATION protein_coding - CCDS20814.1 1 832.0 20.0 0.4 0.0 343.2 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000058638 Zfp110 ENSMUST00000154011 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060860 Ube2s ENSMUST00000205815 ENSMUSP00000146232 TRANSLATION nonsense_mediated_decay - - 1 226.0 0.0 4.01 0.0 137.0 0.0 -4,-5 0.0698 - -2.0 MINOR ENSMUSG00000060860 Ube2s ENSMUST00000079496 ENSMUSP00000078459 TRANSLATION protein_coding - CCDS39743.1 1 223.0 0.0 4.37 6.6 137.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060860 Ube2s ENSMUST00000205885 ENSMUSP00000146213 TRANSLATION protein_coding stop - 2 151.0 0.0 3.41 0.0 127.1 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000060860 Ube2s ENSMUST00000206139 - NO_TRANSLATION retained_intron ENSMUSG00000060860 Ube2s ENSMUST00000206669 ENSMUSP00000146276 TRANSLATION protein_coding stop - 3 46.0 0.0 1.0 0.0 52.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047751 Utf1 ENSMUST00000168457 ENSMUSP00000128848 TRANSLATION protein_coding - CCDS21958.1 1 339.0 0.0 0.0 0.4 28.3 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033904 Ccp110 ENSMUST00000106557 ENSMUSP00000102167 TRANSLATION protein_coding - CCDS21775.1 1 1004.0 0.0 0.0 0.4 64.7 0.0 -4,-5 1.0 14 6.0 PRINCIPAL:1 ENSMUSG00000033904 Ccp110 ENSMUST00000149056 - NO_TRANSLATION retained_intron ENSMUSG00000033904 Ccp110 ENSMUST00000038650 ENSMUSP00000038881 TRANSLATION protein_coding - CCDS21775.1 5 1004.0 0.0 0.0 0.4 64.7 0.0 -4,-5 1.0 14 6.0 PRINCIPAL:1 ENSMUSG00000033904 Ccp110 ENSMUST00000208766 ENSMUSP00000146903 TRANSLATION protein_coding start - 3 184.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000033904 Ccp110 ENSMUST00000123178 ENSMUSP00000147070 TRANSLATION protein_coding start - 1 796.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0166 9 -2.0 MINOR ENSMUSG00000033904 Ccp110 ENSMUST00000140831 - NO_TRANSLATION retained_intron ENSMUSG00000006204 Cdcp3 ENSMUST00000208921 ENSMUSP00000150784 TRANSLATION protein_coding - - 5 2696.0 13.0 16.2225 0.0 1730.6 0.0 2,-1 1.0 42 18.0 PRINCIPAL:1 ENSMUSG00000006204 Cdcp3 ENSMUST00000050586 ENSMUSP00000061529 TRANSLATION protein_coding - CCDS21911.1 1 841.0 3.0 6.863 0.0 498.2 0.0 2,-1 0.0947 9 0.0 MINOR ENSMUSG00000006204 Cdcp3 ENSMUST00000128522 ENSMUSP00000147027 TRANSLATION protein_coding start - 5 286.0 0.0 2.5 0.0 159.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000057706 Mex3b ENSMUST00000082237 ENSMUSP00000082168 TRANSLATION protein_coding - CCDS52286.1 2 576.0 8.0 0.7 6.7 131.4 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000030788 Rnf141 ENSMUST00000175648 ENSMUSP00000135169 TRANSLATION protein_coding start - 3 59.0 2.0 0.93 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030788 Rnf141 ENSMUST00000210070 - NO_TRANSLATION retained_intron ENSMUSG00000030788 Rnf141 ENSMUST00000177236 ENSMUSP00000134781 TRANSLATION protein_coding - CCDS40086.1 1 230.0 8.0 2.749 31.9 39.0 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000030788 Rnf141 ENSMUST00000177462 ENSMUSP00000134917 TRANSLATION protein_coding - - 5 180.0 6.0 1.949 3.2 28.3 0.0 -4,-5 0.0321 4 13.394 MINOR ENSMUSG00000030788 Rnf141 ENSMUST00000176210 ENSMUSP00000135227 TRANSLATION nonsense_mediated_decay start - 2 28.0 6.0 0.83 0.0 28.3 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000030788 Rnf141 ENSMUST00000175981 ENSMUSP00000135123 TRANSLATION protein_coding - - 1 133.0 8.0 2.485 0.0 39.0 0.0 -4,-5 0.0023 1 17.424 MINOR ENSMUSG00000030788 Rnf141 ENSMUST00000148367 - NO_TRANSLATION retained_intron ENSMUSG00000030788 Rnf141 ENSMUST00000176746 ENSMUSP00000135389 TRANSLATION protein_coding stop - 2 21.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030788 Rnf141 ENSMUST00000176716 ENSMUSP00000148202 TRANSLATION protein_coding - - 2 87.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 2 0.432 MINOR ENSMUSG00000030788 Rnf141 ENSMUST00000176048 - NO_TRANSLATION retained_intron ENSMUSG00000030788 Rnf141 ENSMUST00000177520 ENSMUSP00000134958 TRANSLATION protein_coding stop - 3 75.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000030788 Rnf141 ENSMUST00000106682 ENSMUSP00000102293 TRANSLATION protein_coding - CCDS40086.1 3 230.0 8.0 2.749 31.9 39.0 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000019539 Rcn3 ENSMUST00000211760 ENSMUSP00000147762 TRANSLATION protein_coding start - 5 122.0 13.0 2.75 0.0 29.8 0.0 -4,-5 0.0012 6 -2.0 MINOR ENSMUSG00000019539 Rcn3 ENSMUST00000210469 ENSMUSP00000147341 TRANSLATION protein_coding stop - 3 274.0 21.0 6.05 0.0 29.8 0.0 4,-1 0.0017 8 -2.0 MINOR ENSMUSG00000019539 Rcn3 ENSMUST00000210355 - NO_TRANSLATION retained_intron ENSMUSG00000019539 Rcn3 ENSMUST00000209761 ENSMUSP00000147975 TRANSLATION protein_coding start - 5 186.0 19.0 4.75 0.0 29.8 0.0 -4,-6 0.0015 7 -2.0 MINOR ENSMUSG00000019539 Rcn3 ENSMUST00000019683 ENSMUSP00000019683 TRANSLATION protein_coding - CCDS21229.1 1 328.0 24.0 7.3 7.5 46.0 0.0 4,-1 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000019539 Rcn3 ENSMUST00000211352 ENSMUSP00000148227 TRANSLATION protein_coding - CCDS21229.1 1 328.0 24.0 7.3 7.5 46.0 0.0 4,-1 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000019539 Rcn3 ENSMUST00000210527 ENSMUSP00000147532 TRANSLATION protein_coding stop - 2 115.0 4.0 1.8 0.0 0.0 0.0 4,-1 0.0007 2 -2.0 MINOR ENSMUSG00000019539 Rcn3 ENSMUST00000210615 - NO_TRANSLATION retained_intron ENSMUSG00000019539 Rcn3 ENSMUST00000210734 ENSMUSP00000147420 TRANSLATION protein_coding stop - 5 280.0 21.0 6.05 0.0 29.8 0.0 4,-1 0.0026 8 -2.0 MINOR ENSMUSG00000002778 Kdelr1 ENSMUST00000211716 ENSMUSP00000148258 TRANSLATION protein_coding - - 1 138.0 0.0 3.75 0.0 142.1 7.0 0,-4 0.0061 2 6.24 MINOR ENSMUSG00000002778 Kdelr1 ENSMUST00000211152 - NO_TRANSLATION retained_intron ENSMUSG00000002778 Kdelr1 ENSMUST00000211495 - NO_TRANSLATION retained_intron ENSMUSG00000002778 Kdelr1 ENSMUST00000002855 ENSMUSP00000002855 TRANSLATION protein_coding - CCDS21268.1 1 212.0 0.0 5.08 36.9 193.8 9.0 0,-4 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000002778 Kdelr1 ENSMUST00000211234 ENSMUSP00000147273 TRANSLATION protein_coding - - 2 150.0 0.0 3.08 0.0 146.0 6.0 -3,-5 0.0098 1 5.13 MINOR ENSMUSG00000052303 Mrgpra6 ENSMUST00000186456 ENSMUSP00000140353 TRANSLATION protein_coding - - 5 271.0 0.0 1.0 0.0 51.3 0.0 -4,-7 0.7778 - 12.0 PRINCIPAL:1 ENSMUSG00000012640 Zfp715 ENSMUST00000012796 ENSMUSP00000012796 TRANSLATION protein_coding - - 1 183.0 6.0 3.1 0.0 95.1 0.0 -4,-5 0.0 - 2.598 MINOR ENSMUSG00000012640 Zfp715 ENSMUST00000151659 - NO_TRANSLATION retained_intron ENSMUSG00000012640 Zfp715 ENSMUST00000135130 ENSMUSP00000122812 TRANSLATION protein_coding stop - 3 87.0 0.0 1.4 0.0 75.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000012640 Zfp715 ENSMUST00000139061 ENSMUSP00000114600 TRANSLATION protein_coding stop - 3 194.0 0.0 2.0 0.0 76.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000012640 Zfp715 ENSMUST00000048015 ENSMUSP00000040282 TRANSLATION protein_coding - CCDS39928.1 1 886.0 72.0 4.8 0.0 423.7 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000012640 Zfp715 ENSMUST00000145622 ENSMUSP00000138240 TRANSLATION nonsense_mediated_decay - - 1 85.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000012640 Zfp715 ENSMUST00000107986 ENSMUSP00000103620 TRANSLATION protein_coding - CCDS39928.1 1 886.0 72.0 4.8 0.0 423.7 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000030854 Ptpn5 ENSMUST00000033142 ENSMUSP00000033142 TRANSLATION protein_coding - CCDS21294.1 1 541.0 12.0 7.5 4.6 248.9 0.0 -4,-6 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000030854 Ptpn5 ENSMUST00000207344 - NO_TRANSLATION retained_intron ENSMUSG00000030854 Ptpn5 ENSMUST00000209179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030854 Ptpn5 ENSMUST00000208437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030854 Ptpn5 ENSMUST00000209057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030854 Ptpn5 ENSMUST00000102626 ENSMUSP00000099686 TRANSLATION protein_coding - CCDS21294.1 1 541.0 12.0 7.5 4.6 248.9 0.0 -4,-6 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000030854 Ptpn5 ENSMUST00000207172 - NO_TRANSLATION retained_intron ENSMUSG00000030854 Ptpn5 ENSMUST00000208324 - NO_TRANSLATION retained_intron ENSMUSG00000030854 Ptpn5 ENSMUST00000208531 - NO_TRANSLATION retained_intron ENSMUSG00000030854 Ptpn5 ENSMUST00000209184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030854 Ptpn5 ENSMUST00000209161 - NO_TRANSLATION retained_intron ENSMUSG00000110259 Or51b6 ENSMUST00000106864 ENSMUSP00000102477 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 9.6 374.9 6.0 -4,-6 0.8632 - 11.0 ALTERNATIVE:1 ENSMUSG00000110259 Or51b6 ENSMUST00000209528 ENSMUSP00000147914 TRANSLATION protein_coding - CCDS21596.1 - 315.0 0.0 1.0 9.6 374.9 6.0 -4,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000110259 Or51b6 ENSMUST00000214300 ENSMUSP00000150604 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 9.6 374.9 6.0 -4,-6 0.8632 - 11.0 ALTERNATIVE:1 ENSMUSG00000063439 B9d2 ENSMUST00000205325 ENSMUSP00000145729 TRANSLATION protein_coding - - 2 115.0 0.0 2.33 0.0 78.4 0.0 -4,-6 0.0 - 4.002 MINOR ENSMUSG00000063439 B9d2 ENSMUST00000206913 ENSMUSP00000145950 TRANSLATION protein_coding stop - 3 65.0 0.0 2.0 0.0 58.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063439 B9d2 ENSMUST00000108403 ENSMUSP00000104040 TRANSLATION protein_coding - CCDS20992.1 1 175.0 0.0 3.33 30.1 205.1 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000063439 B9d2 ENSMUST00000205658 ENSMUSP00000146289 TRANSLATION protein_coding - CCDS20992.1 1 175.0 0.0 3.33 30.1 205.1 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000094978 Scgb1b20 ENSMUST00000166714 ENSMUSP00000129326 TRANSLATION protein_coding - CCDS57541.1 2 93.0 0.0 1.48 0.9 69.6 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030895 Hpx ENSMUST00000033185 ENSMUSP00000033185 TRANSLATION protein_coding - CCDS21654.1 1 460.0 6.0 8.6 4.2 145.8 0.0 3,-2 1.0 27 20.0 PRINCIPAL:1 ENSMUSG00000030895 Hpx ENSMUST00000210531 ENSMUSP00000147802 TRANSLATION protein_coding stop - 5 190.0 2.0 3.1 0.0 32.7 0.0 3,-2 0.0 8 -2.0 MINOR ENSMUSG00000057667 Bloc1s3 ENSMUST00000077408 ENSMUSP00000076624 TRANSLATION protein_coding - CCDS20904.1 1 195.0 0.0 0.8 1.1 145.9 0.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000066537 Vmn2r57 ENSMUST00000233555 ENSMUSP00000156960 TRANSLATION protein_coding - - - 842.0 3.0 2.81 0.0 370.6 8.0 2,-3 0.0782 - 12.138 MINOR ENSMUSG00000066537 Vmn2r57 ENSMUST00000233793 ENSMUSP00000156532 TRANSLATION protein_coding - - - 561.0 1.0 2.974 0.0 200.6 0.0 2,-3 0.036 - 6.729 MINOR ENSMUSG00000066537 Vmn2r57 ENSMUST00000165029 ENSMUSP00000125817 TRANSLATION protein_coding - CCDS52210.1 5 863.0 3.0 3.11 0.1 408.3 8.0 2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073901 Or2ag19 ENSMUST00000098142 ENSMUSP00000095746 TRANSLATION protein_coding - CCDS21674.1 - 319.0 0.0 1.0 0.7 160.5 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073901 Or2ag19 ENSMUST00000216254 ENSMUSP00000149022 TRANSLATION protein_coding - CCDS21674.1 5 319.0 0.0 1.0 0.7 160.5 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036915 Kirrel2 ENSMUST00000117923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036915 Kirrel2 ENSMUST00000170152 ENSMUSP00000132652 TRANSLATION protein_coding start - 3 175.0 0.0 0.3 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000036915 Kirrel2 ENSMUST00000045817 ENSMUSP00000039395 TRANSLATION protein_coding - CCDS39883.1 1 700.0 0.0 9.7 4.0 123.3 0.0 1,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000036915 Kirrel2 ENSMUST00000169893 ENSMUSP00000131161 TRANSLATION protein_coding start/stop - 1 310.0 0.0 6.9 0.0 89.1 0.0 -4,-5 0.0012 4 -2.0 MINOR ENSMUSG00000036915 Kirrel2 ENSMUST00000140565 - NO_TRANSLATION retained_intron ENSMUSG00000045639 Zfp629 ENSMUST00000122066 ENSMUSP00000113903 TRANSLATION protein_coding - CCDS21873.1 1 867.0 76.0 2.4 8.7 373.1 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000045639 Zfp629 ENSMUST00000058038 ENSMUSP00000053760 TRANSLATION protein_coding - CCDS21873.1 1 867.0 76.0 2.4 8.7 373.1 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000045639 Zfp629 ENSMUST00000151107 ENSMUSP00000139447 TRANSLATION protein_coding - - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000045639 Zfp629 ENSMUST00000152315 ENSMUSP00000114772 TRANSLATION protein_coding stop - 3 195.0 7.0 0.8 0.0 52.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045639 Zfp629 ENSMUST00000131318 ENSMUSP00000116375 TRANSLATION protein_coding stop - 3 244.0 14.0 1.8 0.0 88.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045639 Zfp629 ENSMUST00000128731 ENSMUSP00000140505 TRANSLATION protein_coding - - 3 115.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000045639 Zfp629 ENSMUST00000134446 ENSMUSP00000141017 TRANSLATION protein_coding - - 1 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000045639 Zfp629 ENSMUST00000084564 ENSMUSP00000081612 TRANSLATION protein_coding - CCDS21873.1 1 867.0 76.0 2.4 8.7 373.1 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000045639 Zfp629 ENSMUST00000132524 ENSMUSP00000139924 TRANSLATION protein_coding - - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000002068 Ccne1 ENSMUST00000130329 ENSMUSP00000117662 TRANSLATION protein_coding stop - 3 166.0 0.0 1.5 0.0 38.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002068 Ccne1 ENSMUST00000128785 - NO_TRANSLATION retained_intron ENSMUSG00000002068 Ccne1 ENSMUST00000137097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002068 Ccne1 ENSMUST00000124979 ENSMUSP00000145532 TRANSLATION nonsense_mediated_decay - - 5 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002068 Ccne1 ENSMUST00000108023 ENSMUSP00000103658 TRANSLATION protein_coding - CCDS39914.1 1 408.0 0.0 7.3 7.8 204.4 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000011349 Dmrtc2 ENSMUST00000011493 ENSMUSP00000011493 TRANSLATION protein_coding - CCDS20965.1 1 370.0 8.0 1.2 10.0 246.9 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000040725 Hnrnpul1 ENSMUST00000206832 ENSMUSP00000146263 TRANSLATION protein_coding - CCDS20995.1 1 859.0 9.0 1.82 5.6 216.4 0.0 -4,-6 1.0 24 20.0 PRINCIPAL:1 ENSMUSG00000040725 Hnrnpul1 ENSMUST00000043765 ENSMUSP00000037268 TRANSLATION protein_coding - - 1 759.0 9.0 1.22 4.7 178.6 0.0 -4,-5 0.3017 24 15.36 MINOR ENSMUSG00000040725 Hnrnpul1 ENSMUST00000206041 - NO_TRANSLATION retained_intron ENSMUSG00000040725 Hnrnpul1 ENSMUST00000108401 ENSMUSP00000104038 TRANSLATION protein_coding - CCDS39841.1 1 340.0 0.0 1.566 0.0 71.0 0.0 -4,-6 0.0156 8 5.16 MINOR ENSMUSG00000040725 Hnrnpul1 ENSMUST00000206260 - NO_TRANSLATION retained_intron ENSMUSG00000049761 Pmis2 ENSMUST00000186845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049761 Pmis2 ENSMUST00000051495 ENSMUSP00000144806 TRANSLATION protein_coding - - 1 96.0 0.0 2.0 0.0 56.1 0.0 -4,-6 0.7344 - 12.0 PRINCIPAL:1 ENSMUSG00000053338 Tarm1 ENSMUST00000203020 ENSMUSP00000145188 TRANSLATION protein_coding - - 1 293.0 0.0 1.73 0.0 64.2 3.0 2,-3 0.8364 - 6.0 PRINCIPAL:4 ENSMUSG00000053338 Tarm1 ENSMUST00000065703 ENSMUSP00000069745 TRANSLATION protein_coding - - 1 276.0 0.0 1.73 0.0 64.2 3.0 -2,2 0.1375 - 6.0 ALTERNATIVE:2 ENSMUSG00000053338 Tarm1 ENSMUST00000203821 ENSMUSP00000145491 TRANSLATION protein_coding - CCDS39727.1 1 288.0 0.0 1.73 0.0 64.2 3.0 2,-3 0.7727 - 6.0 ALTERNATIVE:2 ENSMUSG00000045282 Tmem86b ENSMUST00000205360 ENSMUSP00000146201 TRANSLATION protein_coding - - 2 221.0 0.0 3.66 0.0 130.8 7.0 -3,-6 0.079 - 12.0 MINOR ENSMUSG00000045282 Tmem86b ENSMUST00000055085 ENSMUSP00000060237 TRANSLATION protein_coding - CCDS20739.1 1 226.0 0.0 3.66 8.0 130.8 7.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000045282 Tmem86b ENSMUST00000206610 ENSMUSP00000145838 TRANSLATION protein_coding - - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000045282 Tmem86b ENSMUST00000205402 ENSMUSP00000145569 TRANSLATION protein_coding stop - 2 69.0 0.0 1.0 0.0 59.0 0.0 1,-2 0.0029 - -2.0 MINOR ENSMUSG00000015134 Aldh1a3 ENSMUST00000174215 ENSMUSP00000146703 TRANSLATION protein_coding - - 1 176.0 19.0 3.75 0.0 198.1 0.0 -4,-7 0.0 3 0.666 MINOR ENSMUSG00000015134 Aldh1a3 ENSMUST00000173756 - NO_TRANSLATION retained_intron ENSMUSG00000015134 Aldh1a3 ENSMUST00000174209 ENSMUSP00000146806 TRANSLATION protein_coding - - 1 176.0 19.0 3.75 0.0 198.1 0.0 -4,-7 0.0 3 0.666 MINOR ENSMUSG00000015134 Aldh1a3 ENSMUST00000174701 ENSMUSP00000133370 TRANSLATION protein_coding start/stop - 5 277.0 14.0 6.5 0.0 180.7 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000015134 Aldh1a3 ENSMUST00000015278 ENSMUSP00000015278 TRANSLATION protein_coding - CCDS21345.1 1 512.0 27.0 12.55 21.9 621.9 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000096737 Vmn1r117 ENSMUST00000166937 ENSMUSP00000131580 TRANSLATION protein_coding - CCDS52085.1 - 307.0 0.0 0.0 0.4 56.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000055826 Tescl ENSMUST00000069562 ENSMUSP00000064132 TRANSLATION protein_coding - CCDS52138.1 - 231.0 5.0 1.0 0.4 26.4 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000099687 Or51b6b ENSMUST00000213840 ENSMUSP00000150141 TRANSLATION protein_coding - CCDS21584.1 5 317.0 0.0 1.0 7.4 371.9 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000099687 Or51b6b ENSMUST00000068531 ENSMUSP00000070658 TRANSLATION protein_coding - CCDS21584.1 - 317.0 0.0 1.0 7.4 371.9 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030672 Mylpf ENSMUST00000206204 ENSMUSP00000146230 TRANSLATION protein_coding stop - 3 92.0 5.0 2.65 0.0 27.1 0.0 -4,-7 0.005 12 -2.0 MINOR ENSMUSG00000030672 Mylpf ENSMUST00000139613 - NO_TRANSLATION retained_intron ENSMUSG00000030672 Mylpf ENSMUST00000127710 ENSMUSP00000120915 TRANSLATION protein_coding stop - 3 60.0 5.0 2.0 0.0 27.1 0.0 -4,-5 0.0031 8 -2.0 MINOR ENSMUSG00000030672 Mylpf ENSMUST00000143222 - NO_TRANSLATION retained_intron ENSMUSG00000030672 Mylpf ENSMUST00000032910 ENSMUSP00000032910 TRANSLATION protein_coding - CCDS40140.1 1 169.0 5.0 5.07 35.7 24.6 0.0 -4,-2 1.0 20 20.448 PRINCIPAL:1 ENSMUSG00000030672 Mylpf ENSMUST00000206772 ENSMUSP00000145886 TRANSLATION protein_coding - CCDS85420.1 3 149.0 5.0 4.75 17.1 24.6 0.0 -4,-5 0.6366 18 17.662 MINOR ENSMUSG00000062878 Or14a257 ENSMUST00000077800 ENSMUSP00000076973 TRANSLATION protein_coding - CCDS21431.1 - 332.0 0.0 0.8 0.0 126.5 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062878 Or14a257 ENSMUST00000213223 ENSMUSP00000150196 TRANSLATION protein_coding - CCDS21431.1 5 332.0 0.0 0.8 0.0 126.5 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062878 Or14a257 ENSMUST00000216968 ENSMUSP00000149905 TRANSLATION protein_coding - CCDS21431.1 5 332.0 0.0 0.8 0.0 126.5 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062878 Or14a257 ENSMUST00000217110 ENSMUSP00000150228 TRANSLATION protein_coding - CCDS21431.1 5 332.0 0.0 0.8 0.0 126.5 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032637 Atxn2l ENSMUST00000206265 ENSMUSP00000145768 TRANSLATION protein_coding start - 5 144.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032637 Atxn2l ENSMUST00000040202 ENSMUSP00000035415 TRANSLATION protein_coding - CCDS21831.1 1 1049.0 0.0 0.0 0.1 159.7 0.0 -4,-7 1.0 24 2.0 PRINCIPAL:2 ENSMUSG00000032637 Atxn2l ENSMUST00000166682 ENSMUSP00000125881 TRANSLATION protein_coding stop - 5 863.0 0.0 0.0 0.0 151.4 0.0 -4,-6 0.06 23 -2.0 MINOR ENSMUSG00000032637 Atxn2l ENSMUST00000179818 ENSMUSP00000137108 TRANSLATION protein_coding stop - 5 218.0 0.0 0.0 0.0 72.1 0.0 -4,0 0.0 10 -2.0 MINOR ENSMUSG00000032637 Atxn2l ENSMUST00000167759 ENSMUSP00000132959 TRANSLATION protein_coding - CCDS85413.1 1 994.0 0.0 0.0 0.1 159.7 0.0 -4,-5 0.4425 26 2.0 ALTERNATIVE:2 ENSMUSG00000032637 Atxn2l ENSMUST00000206577 ENSMUSP00000146023 TRANSLATION protein_coding - - 5 1096.0 0.0 0.0 0.1 159.7 0.0 -4,-7 0.2616 24 2.0 ALTERNATIVE:2 ENSMUSG00000030738 Eif3c ENSMUST00000032992 ENSMUSP00000032992 TRANSLATION protein_coding - CCDS21832.1 1 911.0 0.0 13.43 17.2 947.0 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000030738 Eif3c ENSMUST00000205949 ENSMUSP00000146083 TRANSLATION nonsense_mediated_decay - - 5 66.0 0.0 0.6 0.0 25.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030738 Eif3c ENSMUST00000180459 ENSMUSP00000138023 TRANSLATION protein_coding stop - 2 249.0 0.0 2.93 0.0 237.3 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000030708 Dnajb13 ENSMUST00000154516 ENSMUSP00000146416 TRANSLATION nonsense_mediated_decay - - 5 114.0 0.0 2.85 0.0 80.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030708 Dnajb13 ENSMUST00000207405 ENSMUSP00000147019 TRANSLATION protein_coding - CCDS21499.1 1 316.0 0.0 7.3 32.0 215.4 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000030708 Dnajb13 ENSMUST00000054923 ENSMUSP00000059074 TRANSLATION protein_coding start - 3 256.0 0.0 5.45 0.0 106.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030708 Dnajb13 ENSMUST00000130534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031015 Swap70 ENSMUST00000033325 ENSMUSP00000033325 TRANSLATION protein_coding - CCDS21744.1 1 585.0 12.0 10.2 30.2 62.1 0.0 -4,-6 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000031015 Swap70 ENSMUST00000210743 - NO_TRANSLATION retained_intron ENSMUSG00000031015 Swap70 ENSMUST00000209261 - NO_TRANSLATION retained_intron ENSMUSG00000031015 Swap70 ENSMUST00000210513 - NO_TRANSLATION retained_intron ENSMUSG00000010307 Tmem86a ENSMUST00000010451 ENSMUSP00000010451 TRANSLATION protein_coding - CCDS39966.1 1 241.0 0.0 0.7 19.4 150.4 0.0 -2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000010307 Tmem86a ENSMUST00000211066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030595 Nfkbib ENSMUST00000032815 ENSMUSP00000032815 TRANSLATION protein_coding - CCDS21054.1 1 359.0 0.0 4.515 8.9 78.3 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000030595 Nfkbib ENSMUST00000085851 ENSMUSP00000083012 TRANSLATION protein_coding - CCDS21054.1 1 359.0 0.0 4.515 8.9 78.3 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000030595 Nfkbib ENSMUST00000137121 ENSMUSP00000117769 TRANSLATION protein_coding stop - 3 150.0 0.0 2.2 0.0 47.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055723 Rras2 ENSMUST00000210075 ENSMUSP00000147655 TRANSLATION nonsense_mediated_decay - - 1 139.0 23.0 4.0 0.0 146.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000055723 Rras2 ENSMUST00000069449 ENSMUSP00000069752 TRANSLATION protein_coding - CCDS21758.1 1 204.0 26.0 5.45 28.3 196.3 0.0 -4,-6 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000054310 Obox1 ENSMUST00000172463 ENSMUSP00000133504 TRANSLATION protein_coding - CCDS20837.1 3 204.0 0.0 1.8 0.0 64.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054310 Obox1 ENSMUST00000067288 ENSMUSP00000067691 TRANSLATION protein_coding - CCDS20837.1 1 204.0 0.0 1.8 0.0 64.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054310 Obox1 ENSMUST00000173245 ENSMUSP00000133496 TRANSLATION protein_coding stop - 5 188.0 0.0 1.8 0.0 64.0 0.0 -4,-5 0.022 - -2.0 MINOR ENSMUSG00000054310 Obox1 ENSMUST00000173443 ENSMUSP00000134043 TRANSLATION protein_coding - CCDS20837.1 5 204.0 0.0 1.8 0.0 64.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054310 Obox1 ENSMUST00000172881 ENSMUSP00000134688 TRANSLATION protein_coding - CCDS20837.1 5 204.0 0.0 1.8 0.0 64.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054310 Obox1 ENSMUST00000181001 ENSMUSP00000138010 TRANSLATION protein_coding - CCDS20837.1 5 204.0 0.0 1.8 0.0 64.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030802 Bckdk ENSMUST00000206068 ENSMUSP00000146249 TRANSLATION protein_coding start - 5 180.0 32.0 2.8 0.0 31.0 0.0 -4,-2 0.0012 2 -2.0 MINOR ENSMUSG00000030802 Bckdk ENSMUST00000206745 ENSMUSP00000145617 TRANSLATION protein_coding - - 5 335.0 24.0 7.54 1.0 141.6 0.0 -2,2 0.0167 8 4.752 MINOR ENSMUSG00000030802 Bckdk ENSMUST00000124533 ENSMUSP00000146115 TRANSLATION protein_coding - - 3 365.0 23.0 8.54 1.0 172.6 0.0 -2,2 0.0206 8 7.944 MINOR ENSMUSG00000030802 Bckdk ENSMUST00000071056 ENSMUSP00000070345 TRANSLATION protein_coding - CCDS21884.1 1 412.0 32.0 10.04 8.7 190.2 0.0 -2,2 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000030802 Bckdk ENSMUST00000146574 - NO_TRANSLATION retained_intron ENSMUSG00000030802 Bckdk ENSMUST00000151451 ENSMUSP00000116990 TRANSLATION protein_coding stop - 2 214.0 0.0 4.41 0.0 135.7 0.0 -2,2 0.0 6 -2.0 MINOR ENSMUSG00000030802 Bckdk ENSMUST00000206140 ENSMUSP00000146303 TRANSLATION protein_coding stop - 5 216.0 0.0 4.41 0.0 113.3 0.0 -2,2 0.0 6 -2.0 MINOR ENSMUSG00000100058 Scgb2b18 ENSMUST00000186529 ENSMUSP00000139701 TRANSLATION protein_coding - CCDS80701.1 5 112.0 0.0 2.3 0.1 96.7 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035523 Vmn1r172 ENSMUST00000038694 ENSMUSP00000041653 TRANSLATION protein_coding - CCDS20932.1 1 313.0 0.0 0.0 0.0 59.7 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000035523 Vmn1r172 ENSMUST00000173101 ENSMUSP00000133887 TRANSLATION protein_coding - CCDS20932.1 1 313.0 0.0 0.0 0.0 59.7 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031070 Mrgprf ENSMUST00000117718 ENSMUSP00000113822 TRANSLATION protein_coding - - 1 77.0 0.0 0.1 0.0 0.0 0.0 -4,-6 0.0 - 0.708 MINOR ENSMUSG00000031070 Mrgprf ENSMUST00000033386 ENSMUSP00000033386 TRANSLATION protein_coding - CCDS22056.1 1 343.0 0.0 0.85 9.8 36.5 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000051180 Or6ae1 ENSMUST00000050585 ENSMUSP00000057288 TRANSLATION protein_coding - CCDS21967.1 - 312.0 0.0 1.0 0.4 183.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074004 B3gnt6 ENSMUST00000098278 ENSMUSP00000095879 TRANSLATION protein_coding - CCDS40027.1 1 391.0 0.0 1.0 0.0 158.1 0.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000090892 Vmn2r41 ENSMUST00000168807 ENSMUSP00000128337 TRANSLATION protein_coding - CCDS57482.1 5 852.0 4.0 2.25 0.1 384.3 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030554 Synm ENSMUST00000051389 ENSMUSP00000050987 TRANSLATION protein_coding - CCDS39983.1 1 1259.0 0.0 1.1 0.3 124.0 0.0 -4,-5 0.5757 48 8.0 ALTERNATIVE:2 ENSMUSG00000030554 Synm ENSMUST00000208815 ENSMUSP00000147111 TRANSLATION protein_coding - - 5 674.0 0.0 1.1 0.0 124.0 0.0 -4,-5 0.0854 27 8.0 ALTERNATIVE:2 ENSMUSG00000030554 Synm ENSMUST00000207102 ENSMUSP00000146510 TRANSLATION protein_coding - - 1 817.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0111 26 0.0 MINOR ENSMUSG00000030554 Synm ENSMUST00000074233 ENSMUSP00000073855 TRANSLATION protein_coding - CCDS39982.1 1 1561.0 0.0 1.1 0.0 124.0 0.0 -4,-5 1.0 55 8.0 PRINCIPAL:2 ENSMUSG00000030554 Synm ENSMUST00000208231 ENSMUSP00000147089 TRANSLATION protein_coding - CCDS85316.1 1 371.0 0.0 1.1 0.0 124.0 0.0 -4,-5 0.2691 20 8.0 ALTERNATIVE:2 ENSMUSG00000054568 Usp17la ENSMUST00000067695 ENSMUSP00000068997 TRANSLATION protein_coding - CCDS21629.1 1 526.0 8.0 0.5 0.0 173.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030533 Unc45a ENSMUST00000127997 ENSMUSP00000114428 TRANSLATION protein_coding stop - 2 84.0 0.0 1.75 0.0 36.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030533 Unc45a ENSMUST00000154428 ENSMUSP00000119665 TRANSLATION nonsense_mediated_decay - - 1 165.0 0.0 0.0 0.1 0.0 1.0 0,-3 0.0065 - -2.0 MINOR ENSMUSG00000030533 Unc45a ENSMUST00000206494 - NO_TRANSLATION retained_intron ENSMUSG00000030533 Unc45a ENSMUST00000135503 - NO_TRANSLATION retained_intron ENSMUSG00000030533 Unc45a ENSMUST00000238999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030533 Unc45a ENSMUST00000206032 - NO_TRANSLATION retained_intron ENSMUSG00000030533 Unc45a ENSMUST00000206363 ENSMUSP00000145577 TRANSLATION protein_coding start - 5 113.0 0.0 2.18 0.0 25.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030533 Unc45a ENSMUST00000133728 ENSMUSP00000123399 TRANSLATION protein_coding stop - 5 273.0 0.0 3.95 0.0 57.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000030533 Unc45a ENSMUST00000032748 ENSMUSP00000032748 TRANSLATION protein_coding - CCDS21395.1 1 944.0 0.0 13.07 6.9 175.8 0.0 -4,-5 1.0 23 14.0 PRINCIPAL:1 ENSMUSG00000030533 Unc45a ENSMUST00000145351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030533 Unc45a ENSMUST00000141774 - NO_TRANSLATION retained_intron ENSMUSG00000030533 Unc45a ENSMUST00000107368 ENSMUSP00000102991 TRANSLATION protein_coding - - 5 1088.0 0.0 12.57 0.0 175.8 1.0 0,-3 0.1912 23 10.998 MINOR ENSMUSG00000003378 Grik5 ENSMUST00000003468 ENSMUSP00000003468 TRANSLATION protein_coding - CCDS20970.1 1 979.0 14.0 15.805 5.4 498.2 0.0 0,-3 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000003378 Grik5 ENSMUST00000206095 - NO_TRANSLATION retained_intron ENSMUSG00000003378 Grik5 ENSMUST00000205328 ENSMUSP00000146079 TRANSLATION nonsense_mediated_decay - - 1 130.0 0.0 1.375 0.0 0.0 0.0 0,-3 0.0 2 -2.0 MINOR ENSMUSG00000003378 Grik5 ENSMUST00000206134 ENSMUSP00000146227 TRANSLATION nonsense_mediated_decay - - 5 270.0 0.0 4.705 0.0 77.3 0.0 0,-3 0.0 6 -2.0 MINOR ENSMUSG00000003378 Grik5 ENSMUST00000205993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003378 Grik5 ENSMUST00000206132 - NO_TRANSLATION retained_intron ENSMUSG00000003378 Grik5 ENSMUST00000205661 - NO_TRANSLATION retained_intron ENSMUSG00000038637 Lrrc56 ENSMUST00000084446 ENSMUSP00000081486 TRANSLATION protein_coding - CCDS52440.1 1 412.0 0.0 3.23 0.1 27.8 0.0 -4,-6 0.2526 - 8.0 ALTERNATIVE:2 ENSMUSG00000038637 Lrrc56 ENSMUST00000070458 ENSMUSP00000063912 TRANSLATION protein_coding - CCDS22004.1 1 552.0 0.0 3.23 0.4 27.8 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000038637 Lrrc56 ENSMUST00000150141 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038637 Lrrc56 ENSMUST00000047093 ENSMUSP00000048691 TRANSLATION protein_coding - CCDS22004.1 1 552.0 0.0 3.23 0.4 27.8 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000038637 Lrrc56 ENSMUST00000209220 ENSMUSP00000147745 TRANSLATION nonsense_mediated_decay - - 3 65.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038637 Lrrc56 ENSMUST00000144008 ENSMUSP00000147342 TRANSLATION protein_coding stop - 2 107.0 0.0 0.53 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038637 Lrrc56 ENSMUST00000144199 - NO_TRANSLATION retained_intron ENSMUSG00000070520 Nsmce3 ENSMUST00000094331 ENSMUSP00000091889 TRANSLATION protein_coding - CCDS21337.1 - 279.0 0.0 0.6 3.3 0.0 0.0 -4,-7 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000002771 Grin2d ENSMUST00000211250 ENSMUSP00000147506 TRANSLATION protein_coding stop - 5 63.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0027 - -2.0 MINOR ENSMUSG00000002771 Grin2d ENSMUST00000002848 ENSMUSP00000002848 TRANSLATION protein_coding - CCDS21267.1 1 1323.0 14.0 9.1 0.1 254.9 3.0 1,-2 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000002771 Grin2d ENSMUST00000211713 ENSMUSP00000147663 TRANSLATION protein_coding - CCDS21267.1 5 1323.0 14.0 9.1 0.1 254.9 3.0 1,-2 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000030469 Zfp719 ENSMUST00000147075 - NO_TRANSLATION retained_intron ENSMUSG00000030469 Zfp719 ENSMUST00000058104 ENSMUSP00000050968 TRANSLATION protein_coding - CCDS52225.1 1 735.0 55.0 1.0 0.1 335.0 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000030469 Zfp719 ENSMUST00000205769 ENSMUSP00000145695 TRANSLATION protein_coding stop - 3 118.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000097425 Vmn1r181 ENSMUST00000228607 - NO_TRANSLATION retained_intron ENSMUSG00000097425 Vmn1r181 ENSMUST00000226843 ENSMUSP00000154127 TRANSLATION protein_coding - CCDS20938.1 - 304.0 0.0 0.0 0.4 47.3 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000097425 Vmn1r181 ENSMUST00000227637 ENSMUSP00000153708 TRANSLATION protein_coding - CCDS20938.1 - 304.0 0.0 0.0 0.4 47.3 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000097425 Vmn1r181 ENSMUST00000228531 - NO_TRANSLATION retained_intron ENSMUSG00000097425 Vmn1r181 ENSMUST00000228842 ENSMUSP00000154403 TRANSLATION protein_coding - CCDS20938.1 - 304.0 0.0 0.0 0.4 47.3 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000097425 Vmn1r181 ENSMUST00000181796 ENSMUSP00000137685 TRANSLATION protein_coding - CCDS20938.1 - 304.0 0.0 0.0 0.4 47.3 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000097425 Vmn1r181 ENSMUST00000226978 ENSMUSP00000153788 TRANSLATION protein_coding - CCDS20938.1 - 304.0 0.0 0.0 0.4 47.3 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000097425 Vmn1r181 ENSMUST00000228399 ENSMUSP00000154337 TRANSLATION protein_coding - CCDS20938.1 - 304.0 0.0 0.0 0.4 47.3 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000008789 Ceacam5 ENSMUST00000081907 ENSMUSP00000080582 TRANSLATION protein_coding - CCDS20863.1 1 947.0 0.0 4.15 0.0 223.0 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030871 Ears2 ENSMUST00000147397 - NO_TRANSLATION retained_intron ENSMUSG00000030871 Ears2 ENSMUST00000151530 - NO_TRANSLATION retained_intron ENSMUSG00000030871 Ears2 ENSMUST00000033159 ENSMUSP00000033159 TRANSLATION protein_coding - CCDS21807.1 1 523.0 18.0 4.802 7.5 291.1 0.0 -4,-2 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000093986 Vmn1r120 ENSMUST00000105202 ENSMUSP00000100837 TRANSLATION protein_coding - CCDS52088.1 - 305.0 0.0 0.0 0.4 50.6 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000019370 Calm3 ENSMUST00000173557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019370 Calm3 ENSMUST00000172594 ENSMUSP00000133559 TRANSLATION nonsense_mediated_decay start - 5 39.0 11.0 1.33 0.0 48.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019370 Calm3 ENSMUST00000173139 ENSMUSP00000134395 TRANSLATION protein_coding start - 3 65.0 8.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019370 Calm3 ENSMUST00000019514 ENSMUSP00000019514 TRANSLATION protein_coding - CCDS39789.1 1 149.0 38.0 4.16 36.9 125.6 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000097075 Cdiptos ENSMUST00000206816 ENSMUSP00000148423 TRANSLATION nonsense_mediated_decay - - 2 87.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0292 - -2.0 MINOR ENSMUSG00000097075 Cdiptos ENSMUST00000206667 - NO_TRANSLATION retained_intron ENSMUSG00000097075 Cdiptos ENSMUST00000206296 ENSMUSP00000148275 TRANSLATION protein_coding - - 5 101.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0304 1 0.0 ALTERNATIVE:2 ENSMUSG00000097075 Cdiptos ENSMUST00000205903 ENSMUSP00000148580 TRANSLATION nonsense_mediated_decay - - 1 87.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0292 1 -2.0 MINOR ENSMUSG00000097075 Cdiptos ENSMUST00000180704 - NO_TRANSLATION retained_intron ENSMUSG00000097075 Cdiptos ENSMUST00000205437 ENSMUSP00000148631 TRANSLATION protein_coding - - 5 117.0 0.0 0.0 2.6 0.0 0.0 -4,-7 1.0 1 1.0 PRINCIPAL:2 ENSMUSG00000097075 Cdiptos ENSMUST00000181859 - NO_TRANSLATION retained_intron ENSMUSG00000097982 Scgb2b12 ENSMUST00000183195 ENSMUSP00000138687 TRANSLATION protein_coding - CCDS59726.1 2 112.0 0.0 2.3 0.1 98.6 0.0 1,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000062861 Zfp28 ENSMUST00000208338 ENSMUSP00000147043 TRANSLATION protein_coding start - 5 161.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062861 Zfp28 ENSMUST00000207086 ENSMUSP00000147010 TRANSLATION nonsense_mediated_decay start - 2 58.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000062861 Zfp28 ENSMUST00000208949 ENSMUSP00000146936 TRANSLATION nonsense_mediated_decay start - 5 30.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000062861 Zfp28 ENSMUST00000081022 ENSMUSP00000079812 TRANSLATION protein_coding - CCDS39752.1 1 825.0 56.0 2.03 0.4 335.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000062861 Zfp28 ENSMUST00000207809 ENSMUSP00000147150 TRANSLATION protein_coding start - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0007 - -2.0 MINOR ENSMUSG00000062861 Zfp28 ENSMUST00000207465 ENSMUSP00000146738 TRANSLATION protein_coding start - 3 171.0 0.0 0.93 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000011427 Zfp790 ENSMUST00000032796 ENSMUSP00000032796 TRANSLATION protein_coding - CCDS52174.1 1 779.0 51.0 0.6 0.4 331.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000011427 Zfp790 ENSMUST00000178162 ENSMUSP00000136932 TRANSLATION protein_coding - CCDS52174.1 1 779.0 51.0 0.6 0.4 331.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000011427 Zfp790 ENSMUST00000207328 ENSMUSP00000146955 TRANSLATION protein_coding stop - 3 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0354 - -2.0 MINOR ENSMUSG00000051184 Zfp524 ENSMUST00000086349 ENSMUSP00000083533 TRANSLATION protein_coding - CCDS20752.1 1 321.0 16.0 0.6 1.4 38.9 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000051184 Zfp524 ENSMUST00000209030 ENSMUSP00000147095 TRANSLATION protein_coding - CCDS20752.1 5 321.0 16.0 0.6 1.4 38.9 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000051184 Zfp524 ENSMUST00000207901 ENSMUSP00000146921 TRANSLATION protein_coding - CCDS20752.1 5 321.0 16.0 0.6 1.4 38.9 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000091239 Vmn2r76 ENSMUST00000233312 ENSMUSP00000156422 TRANSLATION protein_coding - - - 558.0 2.0 2.336 0.0 162.5 1.0 1,-3 0.0034 - 7.524 MINOR ENSMUSG00000091239 Vmn2r76 ENSMUST00000165771 ENSMUSP00000127309 TRANSLATION protein_coding - CCDS52298.1 5 853.0 4.0 2.736 0.4 371.1 16.0 -1,-5 0.7588 - 12.0 ALTERNATIVE:2 ENSMUSG00000091239 Vmn2r76 ENSMUST00000233928 ENSMUSP00000156824 TRANSLATION protein_coding - - - 850.0 4.0 2.736 0.4 371.1 16.0 1,-3 0.7729 - 12.0 PRINCIPAL:4 ENSMUSG00000091239 Vmn2r76 ENSMUST00000232799 ENSMUSP00000156390 TRANSLATION protein_coding - - - 581.0 4.0 2.016 0.0 265.1 16.0 1,-3 0.0103 - 10.422 MINOR ENSMUSG00000091239 Vmn2r76 ENSMUST00000240709 ENSMUSP00000159502 TRANSLATION protein_coding - - - 847.0 4.0 2.736 0.4 373.8 16.0 1,-3 0.4981 - 12.0 ALTERNATIVE:2 ENSMUSG00000091239 Vmn2r76 ENSMUST00000233231 ENSMUSP00000156706 TRANSLATION nonsense_mediated_decay - - - 66.0 0.0 0.066 0.0 0.0 1.0 1,-3 0.0031 - -2.0 MINOR ENSMUSG00000091239 Vmn2r76 ENSMUST00000233317 ENSMUSP00000156459 TRANSLATION protein_coding - - - 850.0 4.0 2.736 0.4 371.1 16.0 1,-3 0.7729 - 12.0 PRINCIPAL:4 ENSMUSG00000091239 Vmn2r76 ENSMUST00000233211 - NO_TRANSLATION retained_intron ENSMUSG00000091239 Vmn2r76 ENSMUST00000233744 ENSMUSP00000156574 TRANSLATION protein_coding - - - 647.0 4.0 2.336 0.0 296.3 16.0 1,-3 0.0109 - 11.124 MINOR ENSMUSG00000091239 Vmn2r76 ENSMUST00000233075 ENSMUSP00000156725 TRANSLATION protein_coding - - - 565.0 2.0 2.336 0.0 162.5 1.0 1,-3 0.0034 - 7.524 MINOR ENSMUSG00000030761 Myo7a ENSMUST00000138627 ENSMUSP00000114944 TRANSLATION protein_coding stop - 3 139.0 6.0 1.901 0.0 63.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030761 Myo7a ENSMUST00000107122 ENSMUSP00000102739 TRANSLATION protein_coding - CCDS57564.1 1 2172.0 16.0 36.225 1.0 1098.4 0.0 -4,-5 0.4929 34 16.878 MINOR ENSMUSG00000030761 Myo7a ENSMUST00000107128 ENSMUSP00000102745 TRANSLATION protein_coding - CCDS57565.1 5 2215.0 16.0 35.456 4.0 1109.4 0.0 -4,-5 0.4656 37 16.682 MINOR ENSMUSG00000030761 Myo7a ENSMUST00000084979 ENSMUSP00000082046 TRANSLATION protein_coding - CCDS57563.1 1 2166.0 16.0 36.39 1.0 1109.4 0.0 -4,-5 0.5163 34 17.868 MINOR ENSMUSG00000030761 Myo7a ENSMUST00000131632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030761 Myo7a ENSMUST00000155637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030761 Myo7a ENSMUST00000238540 ENSMUSP00000158620 TRANSLATION protein_coding start/stop - - 100.0 0.0 1.866 0.0 74.1 0.0 -4,-5 0.0001 2 -2.0 MINOR ENSMUSG00000030761 Myo7a ENSMUST00000205746 ENSMUSP00000146165 TRANSLATION protein_coding - - 5 2164.0 16.0 36.39 1.0 1109.4 0.0 -4,-5 0.4019 34 17.868 MINOR ENSMUSG00000030761 Myo7a ENSMUST00000149079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030761 Myo7a ENSMUST00000153657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030761 Myo7a ENSMUST00000238309 ENSMUSP00000158850 TRANSLATION protein_coding stop - - 76.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030761 Myo7a ENSMUST00000156992 ENSMUSP00000146114 TRANSLATION nonsense_mediated_decay start - 5 215.0 0.0 3.6 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000030761 Myo7a ENSMUST00000124787 - NO_TRANSLATION retained_intron ENSMUSG00000030761 Myo7a ENSMUST00000152975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030761 Myo7a ENSMUST00000107127 ENSMUSP00000102744 TRANSLATION protein_coding - CCDS40026.1 5 2177.0 16.0 36.456 18.6 1109.4 0.0 -4,-5 1.0 35 22.0 PRINCIPAL:1 ENSMUSG00000039236 Isg20 ENSMUST00000205981 ENSMUSP00000145840 TRANSLATION protein_coding - - 3 145.0 7.0 2.0 0.0 46.5 0.0 -4,-5 0.0003 4 13.182 MINOR ENSMUSG00000039236 Isg20 ENSMUST00000120331 ENSMUSP00000113255 TRANSLATION protein_coding - CCDS21376.1 1 181.0 9.0 3.0 4.0 61.8 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000039236 Isg20 ENSMUST00000038142 ENSMUSP00000040080 TRANSLATION protein_coding - CCDS21376.1 1 181.0 9.0 3.0 4.0 61.8 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000039236 Isg20 ENSMUST00000118867 ENSMUSP00000112480 TRANSLATION protein_coding - CCDS21376.1 3 181.0 9.0 3.0 4.0 61.8 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000039236 Isg20 ENSMUST00000133042 - NO_TRANSLATION retained_intron ENSMUSG00000039236 Isg20 ENSMUST00000121645 ENSMUSP00000112621 TRANSLATION protein_coding - CCDS71982.1 1 300.0 7.0 2.0 0.0 46.5 0.0 -4,-5 0.0055 4 13.182 MINOR ENSMUSG00000030972 Acsm5 ENSMUST00000207796 ENSMUSP00000146520 TRANSLATION nonsense_mediated_decay - - 5 545.0 27.0 10.07 0.0 285.2 0.0 -2,2 0.0053 11 -2.0 MINOR ENSMUSG00000030972 Acsm5 ENSMUST00000207440 ENSMUSP00000146938 TRANSLATION protein_coding - CCDS40106.1 1 578.0 28.0 11.42 4.6 340.1 0.0 -2,2 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000030972 Acsm5 ENSMUST00000207813 ENSMUSP00000147176 TRANSLATION protein_coding - - 1 273.0 6.0 3.76 0.0 101.8 0.0 -2,2 0.0005 6 0.0 MINOR ENSMUSG00000030972 Acsm5 ENSMUST00000207387 ENSMUSP00000146357 TRANSLATION protein_coding - - 1 311.0 7.0 4.46 0.0 115.0 0.0 -2,2 0.0023 6 0.0 MINOR ENSMUSG00000030972 Acsm5 ENSMUST00000066465 ENSMUSP00000063416 TRANSLATION protein_coding - CCDS40106.1 1 578.0 28.0 11.42 4.6 340.1 0.0 -2,2 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000030972 Acsm5 ENSMUST00000207381 ENSMUSP00000146715 TRANSLATION nonsense_mediated_decay - - 5 92.0 0.0 0.2 0.0 0.0 0.0 -2,2 0.0004 1 -2.0 MINOR ENSMUSG00000030972 Acsm5 ENSMUST00000207307 ENSMUSP00000146737 TRANSLATION nonsense_mediated_decay - - 1 273.0 6.0 3.76 0.0 101.8 0.0 -2,2 0.0005 6 -2.0 MINOR ENSMUSG00000040428 Plekha4 ENSMUST00000051810 ENSMUSP00000051468 TRANSLATION protein_coding - CCDS52248.1 5 779.0 8.0 3.58 0.4 59.6 0.0 -4,0 0.42 3 14.0 ALTERNATIVE:2 ENSMUSG00000040428 Plekha4 ENSMUST00000211348 ENSMUSP00000147799 TRANSLATION protein_coding start - 3 94.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000040428 Plekha4 ENSMUST00000210480 ENSMUSP00000147680 TRANSLATION protein_coding stop - 3 56.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0008 1 -2.0 MINOR ENSMUSG00000040428 Plekha4 ENSMUST00000210797 ENSMUSP00000148244 TRANSLATION protein_coding start - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000040428 Plekha4 ENSMUST00000211155 ENSMUSP00000147878 TRANSLATION protein_coding - - 5 612.0 8.0 3.58 0.0 59.6 0.0 -4,0 0.1351 1 14.0 ALTERNATIVE:2 ENSMUSG00000040428 Plekha4 ENSMUST00000211106 - NO_TRANSLATION retained_intron ENSMUSG00000040428 Plekha4 ENSMUST00000211227 ENSMUSP00000148001 TRANSLATION protein_coding - - 1 588.0 8.0 3.58 0.0 59.6 0.0 -4,0 0.7922 1 14.0 PRINCIPAL:2 ENSMUSG00000040428 Plekha4 ENSMUST00000211797 ENSMUSP00000147344 TRANSLATION nonsense_mediated_decay - - 2 480.0 1.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040428 Plekha4 ENSMUST00000209517 ENSMUSP00000148229 TRANSLATION protein_coding - CCDS52248.1 5 779.0 8.0 3.58 0.4 59.6 0.0 -4,0 0.42 3 14.0 ALTERNATIVE:2 ENSMUSG00000040428 Plekha4 ENSMUST00000211794 - NO_TRANSLATION retained_intron ENSMUSG00000025324 Atp10a ENSMUST00000207668 ENSMUSP00000146388 TRANSLATION protein_coding stop - 3 141.0 0.0 0.5 0.0 76.5 2.0 -4,-7 0.0005 - -2.0 MINOR ENSMUSG00000025324 Atp10a ENSMUST00000168747 ENSMUSP00000129811 TRANSLATION protein_coding - CCDS39972.1 1 1508.0 3.0 10.865 0.1 386.7 10.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000008683 Rps15a ENSMUST00000131374 ENSMUSP00000119975 TRANSLATION protein_coding - CCDS21768.1 1 130.0 0.0 3.91 36.2 0.0 0.0 -4,-7 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000008683 Rps15a ENSMUST00000172457 ENSMUSP00000127791 TRANSLATION protein_coding - CCDS21768.1 1 130.0 0.0 3.91 36.2 0.0 0.0 -4,-7 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000008683 Rps15a ENSMUST00000128482 ENSMUSP00000114544 TRANSLATION protein_coding stop - 5 71.0 0.0 1.75 0.7 0.0 0.0 -4,-7 0.0468 4 -2.0 MINOR ENSMUSG00000008683 Rps15a ENSMUST00000134270 - NO_TRANSLATION retained_intron ENSMUSG00000008683 Rps15a ENSMUST00000131840 ENSMUSP00000116061 TRANSLATION protein_coding stop - 5 78.0 0.0 2.08 0.0 0.0 0.0 -4,-7 0.0062 5 -2.0 MINOR ENSMUSG00000008683 Rps15a ENSMUST00000106588 ENSMUSP00000102198 TRANSLATION protein_coding - CCDS21768.1 3 130.0 0.0 3.91 36.2 0.0 0.0 -4,-7 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000008683 Rps15a ENSMUST00000106590 ENSMUSP00000102200 TRANSLATION protein_coding stop - 1 108.0 0.0 3.16 1.0 0.0 0.0 -4,-7 0.0557 7 -2.0 MINOR ENSMUSG00000040952 Rps19 ENSMUST00000156372 ENSMUSP00000120774 TRANSLATION protein_coding stop - 2 137.0 0.0 3.08 0.0 173.8 0.0 -4,-7 0.0019 9 -2.0 MINOR ENSMUSG00000040952 Rps19 ENSMUST00000130335 - NO_TRANSLATION retained_intron ENSMUSG00000040952 Rps19 ENSMUST00000108430 ENSMUSP00000104068 TRANSLATION protein_coding - CCDS20966.1 1 145.0 0.0 3.74 24.9 197.5 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000040952 Rps19 ENSMUST00000124035 ENSMUSP00000116311 TRANSLATION protein_coding stop - 2 176.0 0.0 3.41 0.0 195.4 0.0 -4,-2 0.012 9 -2.0 MINOR ENSMUSG00000040952 Rps19 ENSMUST00000108429 ENSMUSP00000104067 TRANSLATION protein_coding - CCDS20966.1 2 145.0 0.0 3.74 24.9 197.5 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000040952 Rps19 ENSMUST00000146004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040952 Rps19 ENSMUST00000153451 ENSMUSP00000114949 TRANSLATION protein_coding stop - 3 133.0 0.0 3.41 0.0 187.8 0.0 -4,-6 0.0272 9 -2.0 MINOR ENSMUSG00000040952 Rps19 ENSMUST00000138662 - NO_TRANSLATION retained_intron ENSMUSG00000040952 Rps19 ENSMUST00000108428 ENSMUSP00000104066 TRANSLATION protein_coding - - 1 212.0 0.0 3.41 0.0 195.4 0.0 -4,-6 0.0056 9 11.214 MINOR ENSMUSG00000040952 Rps19 ENSMUST00000129847 ENSMUSP00000138466 TRANSLATION nonsense_mediated_decay - - 2 72.0 0.0 1.95 0.0 74.8 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000094762 Gm10670 ENSMUST00000098744 ENSMUSP00000096340 TRANSLATION protein_coding - CCDS52074.1 - 321.0 0.0 0.0 0.0 59.7 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000099900 Scgb2b21 ENSMUST00000185407 ENSMUSP00000140117 TRANSLATION protein_coding - CCDS80702.1 5 112.0 0.0 2.3 0.1 93.1 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030492 Slc7a9 ENSMUST00000032703 ENSMUSP00000032703 TRANSLATION protein_coding - CCDS21150.1 1 487.0 0.0 10.93 13.2 78.3 8.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030492 Slc7a9 ENSMUST00000118383 ENSMUSP00000113181 TRANSLATION protein_coding - CCDS21150.1 5 487.0 0.0 10.93 13.2 78.3 8.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030492 Slc7a9 ENSMUST00000141905 - NO_TRANSLATION retained_intron ENSMUSG00000030492 Slc7a9 ENSMUST00000147026 - NO_TRANSLATION retained_intron ENSMUSG00000030492 Slc7a9 ENSMUST00000118969 ENSMUSP00000112726 TRANSLATION protein_coding - CCDS21150.1 1 487.0 0.0 10.93 13.2 78.3 8.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030492 Slc7a9 ENSMUST00000141245 ENSMUSP00000117352 TRANSLATION nonsense_mediated_decay start - 5 27.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000100512 Ovol3 ENSMUST00000189482 ENSMUSP00000140811 TRANSLATION protein_coding - CCDS80691.1 5 189.0 15.0 2.1 7.9 63.1 0.0 -4,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000032860 P2ry2 ENSMUST00000037540 ENSMUSP00000036765 TRANSLATION protein_coding - CCDS21508.1 1 373.0 0.0 0.8 11.0 127.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032860 P2ry2 ENSMUST00000178340 ENSMUSP00000137152 TRANSLATION protein_coding - CCDS21508.1 1 373.0 0.0 0.8 11.0 127.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032860 P2ry2 ENSMUST00000207049 ENSMUSP00000146923 TRANSLATION protein_coding stop - 3 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032860 P2ry2 ENSMUST00000208258 - NO_TRANSLATION retained_intron ENSMUSG00000032860 P2ry2 ENSMUST00000208340 ENSMUSP00000146679 TRANSLATION protein_coding - CCDS21508.1 1 373.0 0.0 0.8 11.0 127.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032860 P2ry2 ENSMUST00000207916 ENSMUSP00000146352 TRANSLATION protein_coding - CCDS21508.1 1 373.0 0.0 0.8 11.0 127.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094822 Or52a20 ENSMUST00000215723 ENSMUSP00000150329 TRANSLATION protein_coding - CCDS21586.1 5 316.0 0.0 1.0 7.1 349.1 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094822 Or52a20 ENSMUST00000098194 ENSMUSP00000095796 TRANSLATION protein_coding - CCDS21586.1 - 316.0 0.0 1.0 7.1 349.1 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051362 Or52e2 ENSMUST00000218483 ENSMUSP00000151739 TRANSLATION protein_coding - CCDS21562.1 5 317.0 0.0 1.0 5.5 438.6 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051362 Or52e2 ENSMUST00000061055 ENSMUSP00000060166 TRANSLATION protein_coding - CCDS21562.1 - 317.0 0.0 1.0 5.5 438.6 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047554 Tmem41b ENSMUST00000094097 ENSMUSP00000091641 TRANSLATION protein_coding - CCDS21742.1 1 291.0 0.0 6.3 8.5 79.5 7.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000047554 Tmem41b ENSMUST00000125703 - NO_TRANSLATION retained_intron ENSMUSG00000047554 Tmem41b ENSMUST00000154831 ENSMUSP00000123138 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000047554 Tmem41b ENSMUST00000119929 ENSMUSP00000113215 TRANSLATION protein_coding - - 1 224.0 0.0 5.55 0.0 79.5 5.0 -4,-6 0.0959 - 10.5 MINOR ENSMUSG00000047554 Tmem41b ENSMUST00000118429 ENSMUSP00000112574 TRANSLATION protein_coding - CCDS21742.1 1 291.0 0.0 6.3 8.5 79.5 7.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000047554 Tmem41b ENSMUST00000207300 - NO_TRANSLATION retained_intron ENSMUSG00000047554 Tmem41b ENSMUST00000124821 ENSMUSP00000119520 TRANSLATION nonsense_mediated_decay - - 3 94.0 0.0 1.25 0.0 0.0 2.0 -4,-2 0.002 2 -2.0 MINOR ENSMUSG00000047554 Tmem41b ENSMUST00000135565 ENSMUSP00000121078 TRANSLATION nonsense_mediated_decay - - 5 123.0 0.0 2.25 1.7 0.0 2.0 -4,-2 0.0519 2 -2.0 MINOR ENSMUSG00000047554 Tmem41b ENSMUST00000151587 - NO_TRANSLATION retained_intron ENSMUSG00000001827 Folr1 ENSMUST00000106985 ENSMUSP00000102598 TRANSLATION protein_coding - CCDS21517.1 5 255.0 16.0 5.0 0.4 217.7 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000001827 Folr1 ENSMUST00000106983 ENSMUSP00000102596 TRANSLATION protein_coding - CCDS21517.1 5 255.0 16.0 5.0 0.4 217.7 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000001827 Folr1 ENSMUST00000134145 ENSMUSP00000118547 TRANSLATION protein_coding stop - 3 103.0 2.0 2.0 0.0 84.2 0.0 3,-2 0.0006 3 -2.0 MINOR ENSMUSG00000001827 Folr1 ENSMUST00000123630 ENSMUSP00000121947 TRANSLATION protein_coding stop - 2 54.0 0.0 0.83 0.0 0.0 0.0 3,-2 0.006 2 -2.0 MINOR ENSMUSG00000001827 Folr1 ENSMUST00000126204 ENSMUSP00000117175 TRANSLATION protein_coding stop - 5 137.0 7.0 3.25 0.0 131.9 0.0 3,-2 0.0006 3 -2.0 MINOR ENSMUSG00000001827 Folr1 ENSMUST00000150184 ENSMUSP00000114919 TRANSLATION protein_coding stop - 1 42.0 0.0 0.5 0.0 0.0 0.0 3,-2 0.006 2 -2.0 MINOR ENSMUSG00000001827 Folr1 ENSMUST00000151706 ENSMUSP00000115077 TRANSLATION protein_coding stop - 5 156.0 10.0 3.75 0.0 159.9 0.0 3,-2 0.0006 4 -2.0 MINOR ENSMUSG00000001827 Folr1 ENSMUST00000106982 ENSMUSP00000102595 TRANSLATION protein_coding - CCDS21517.1 3 255.0 16.0 5.0 0.4 217.7 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000001827 Folr1 ENSMUST00000140584 ENSMUSP00000116068 TRANSLATION protein_coding stop - 2 29.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0018 - -2.0 MINOR ENSMUSG00000001827 Folr1 ENSMUST00000140068 ENSMUSP00000114633 TRANSLATION protein_coding stop - 3 160.0 13.0 4.0 0.0 167.7 0.0 3,-2 0.0006 4 -2.0 MINOR ENSMUSG00000001827 Folr1 ENSMUST00000106981 ENSMUSP00000102594 TRANSLATION protein_coding - CCDS21517.1 1 255.0 16.0 5.0 0.4 217.7 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000001827 Folr1 ENSMUST00000106986 ENSMUSP00000102599 TRANSLATION protein_coding - CCDS21517.1 1 255.0 16.0 5.0 0.4 217.7 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000001827 Folr1 ENSMUST00000124026 ENSMUSP00000121374 TRANSLATION protein_coding stop - 3 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0207 - -2.0 MINOR ENSMUSG00000001827 Folr1 ENSMUST00000123321 ENSMUSP00000114167 TRANSLATION protein_coding stop - 3 54.0 0.0 1.0 0.0 0.0 0.0 3,-2 0.006 2 -2.0 MINOR ENSMUSG00000001827 Folr1 ENSMUST00000125298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001827 Folr1 ENSMUST00000155311 ENSMUSP00000115360 TRANSLATION protein_coding stop - 3 53.0 0.0 0.83 0.0 0.0 0.0 3,-2 0.006 2 -2.0 MINOR ENSMUSG00000070837 Aurkc ENSMUST00000086248 ENSMUSP00000083426 TRANSLATION protein_coding - CCDS85211.1 1 276.0 17.0 5.83 0.0 245.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000070837 Aurkc ENSMUST00000207660 ENSMUSP00000147055 TRANSLATION protein_coding - - 5 105.0 0.0 2.0 0.0 81.5 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000070837 Aurkc ENSMUST00000208518 ENSMUSP00000146898 TRANSLATION protein_coding stop - 3 146.0 16.0 3.08 0.0 131.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000070837 Aurkc ENSMUST00000207711 ENSMUSP00000146450 TRANSLATION protein_coding - CCDS85211.1 1 276.0 17.0 5.83 0.0 245.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000070837 Aurkc ENSMUST00000208049 ENSMUSP00000147207 TRANSLATION protein_coding - CCDS85211.1 1 276.0 17.0 5.83 0.0 245.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000066583 Scgb1b27 ENSMUST00000173387 ENSMUSP00000133764 TRANSLATION protein_coding - - 2 90.0 0.0 1.315 0.0 65.2 0.0 2,-2 0.0588 2 10.668 MINOR ENSMUSG00000066583 Scgb1b27 ENSMUST00000085618 ENSMUSP00000082758 TRANSLATION protein_coding - CCDS39908.1 1 92.0 0.0 1.48 0.0 73.3 0.0 2,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000025499 Hras ENSMUST00000097957 ENSMUSP00000095570 TRANSLATION protein_coding - CCDS22003.1 2 189.0 25.0 4.41 36.9 197.4 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000025499 Hras ENSMUST00000168550 ENSMUSP00000132110 TRANSLATION protein_coding - CCDS52439.1 5 188.0 25.0 3.33 0.0 181.3 0.0 -4,-6 0.0831 2 14.874 MINOR ENSMUSG00000025499 Hras ENSMUST00000134008 ENSMUSP00000147590 TRANSLATION nonsense_mediated_decay start - 5 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025499 Hras ENSMUST00000124314 ENSMUSP00000147731 TRANSLATION protein_coding - CCDS52439.1 5 188.0 25.0 3.33 0.0 181.3 0.0 -4,-6 0.0831 2 14.874 MINOR ENSMUSG00000025499 Hras ENSMUST00000124971 ENSMUSP00000138189 TRANSLATION nonsense_mediated_decay - - 2 119.0 18.0 2.0 0.0 118.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025499 Hras ENSMUST00000026572 ENSMUSP00000026572 TRANSLATION protein_coding - CCDS22003.1 1 189.0 25.0 4.41 36.9 197.4 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000025499 Hras ENSMUST00000128993 - NO_TRANSLATION retained_intron ENSMUSG00000073920 Or56b2 ENSMUST00000214876 ENSMUSP00000151208 TRANSLATION protein_coding - CCDS21626.1 5 319.0 0.0 1.0 10.8 247.4 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073920 Or56b2 ENSMUST00000215864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073920 Or56b2 ENSMUST00000098168 ENSMUSP00000095770 TRANSLATION protein_coding - CCDS21626.1 - 319.0 0.0 1.0 10.8 247.4 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074071 Fam169b ENSMUST00000125685 ENSMUSP00000146700 TRANSLATION protein_coding - CCDS85317.1 1 337.0 10.0 4.35 0.0 0.0 0.0 -4,-5 0.9092 2 12.0 PRINCIPAL:2 ENSMUSG00000074071 Fam169b ENSMUST00000210558 ENSMUSP00000147610 TRANSLATION protein_coding - - 5 342.0 10.0 4.35 0.0 0.0 0.0 -4,-5 0.182 2 12.0 ALTERNATIVE:2 ENSMUSG00000074071 Fam169b ENSMUST00000153805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074071 Fam169b ENSMUST00000153458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074071 Fam169b ENSMUST00000208070 - NO_TRANSLATION retained_intron ENSMUSG00000038387 Rras ENSMUST00000044111 ENSMUSP00000042150 TRANSLATION protein_coding - CCDS21226.1 1 218.0 28.0 5.53 9.0 187.7 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000038387 Rras ENSMUST00000210397 ENSMUSP00000147508 TRANSLATION nonsense_mediated_decay start - 5 107.0 19.0 2.83 0.0 104.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038387 Rras ENSMUST00000210895 ENSMUSP00000147980 TRANSLATION protein_coding stop - 5 57.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0004 - -2.0 MINOR ENSMUSG00000063065 Mapk3 ENSMUST00000091328 ENSMUSP00000088880 TRANSLATION protein_coding - - 1 265.0 10.0 6.5 1.2 184.9 0.0 -4,-5 0.0407 6 6.034 MINOR ENSMUSG00000063065 Mapk3 ENSMUST00000057669 ENSMUSP00000051619 TRANSLATION protein_coding - CCDS21841.1 1 380.0 18.0 8.83 0.4 234.4 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000063065 Mapk3 ENSMUST00000205657 ENSMUSP00000146161 TRANSLATION protein_coding start/stop - 5 335.0 18.0 7.83 0.0 218.0 0.0 -4,-5 0.0112 10 -2.0 MINOR ENSMUSG00000063065 Mapk3 ENSMUST00000206875 - NO_TRANSLATION retained_intron ENSMUSG00000063065 Mapk3 ENSMUST00000206272 ENSMUSP00000146179 TRANSLATION protein_coding start/stop - 5 214.0 11.0 4.5 0.0 87.9 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000063065 Mapk3 ENSMUST00000050201 ENSMUSP00000101969 TRANSLATION protein_coding - - 3 380.0 18.0 7.58 0.0 234.4 0.0 -4,-5 0.6749 9 15.498 MINOR ENSMUSG00000063065 Mapk3 ENSMUST00000135649 - NO_TRANSLATION retained_intron ENSMUSG00000063065 Mapk3 ENSMUST00000145965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073785 Krtap5-5 ENSMUST00000097942 ENSMUSP00000095555 TRANSLATION protein_coding - CCDS22026.1 - 241.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8892 - 0.0 PRINCIPAL:1 ENSMUSG00000030720 Cln3 ENSMUST00000128970 ENSMUSP00000114901 TRANSLATION protein_coding stop - 3 195.0 0.0 0.0 0.0 189.1 9.0 -4,-6 0.0022 - -2.0 MINOR ENSMUSG00000030720 Cln3 ENSMUST00000134246 - NO_TRANSLATION retained_intron ENSMUSG00000030720 Cln3 ENSMUST00000128049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030720 Cln3 ENSMUST00000153790 - NO_TRANSLATION retained_intron ENSMUSG00000030720 Cln3 ENSMUST00000125508 ENSMUSP00000117561 TRANSLATION protein_coding stop - 5 151.0 0.0 0.0 0.0 146.0 9.0 -4,-6 0.0022 - -2.0 MINOR ENSMUSG00000030720 Cln3 ENSMUST00000150587 ENSMUSP00000118054 TRANSLATION protein_coding stop - 2 70.0 0.0 0.0 0.0 47.1 3.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030720 Cln3 ENSMUST00000124177 - NO_TRANSLATION retained_intron ENSMUSG00000030720 Cln3 ENSMUST00000134498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030720 Cln3 ENSMUST00000150311 ENSMUSP00000116160 TRANSLATION protein_coding stop - 5 69.0 0.0 0.0 0.0 46.4 3.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030720 Cln3 ENSMUST00000128225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030720 Cln3 ENSMUST00000134406 - NO_TRANSLATION retained_intron ENSMUSG00000030720 Cln3 ENSMUST00000084589 ENSMUSP00000081636 TRANSLATION protein_coding - CCDS21833.1 1 438.0 0.0 0.0 11.0 458.8 17.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000030720 Cln3 ENSMUST00000139766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030720 Cln3 ENSMUST00000147086 ENSMUSP00000114555 TRANSLATION protein_coding stop - 2 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030720 Cln3 ENSMUST00000138285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030720 Cln3 ENSMUST00000150917 ENSMUSP00000138688 TRANSLATION nonsense_mediated_decay - - 5 77.0 0.0 0.0 0.0 47.3 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030720 Cln3 ENSMUST00000032962 ENSMUSP00000032962 TRANSLATION protein_coding - CCDS21833.1 1 438.0 0.0 0.0 11.0 458.8 17.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000030720 Cln3 ENSMUST00000116269 ENSMUSP00000111973 TRANSLATION protein_coding - CCDS21833.1 5 438.0 0.0 0.0 11.0 458.8 17.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000030720 Cln3 ENSMUST00000098036 ENSMUSP00000095644 TRANSLATION protein_coding - - 1 414.0 0.0 0.0 1.0 449.7 17.0 -4,-6 0.056 - 5.454 MINOR ENSMUSG00000066513 Klk1b4 ENSMUST00000077354 ENSMUSP00000076576 TRANSLATION protein_coding - CCDS21200.1 1 256.0 10.0 4.0 7.8 224.6 0.0 4,-1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000035458 Tnni3 ENSMUST00000150166 - NO_TRANSLATION retained_intron ENSMUSG00000035458 Tnni3 ENSMUST00000154913 ENSMUSP00000122916 TRANSLATION protein_coding stop - 3 112.0 0.0 2.91 0.0 58.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035458 Tnni3 ENSMUST00000126873 - NO_TRANSLATION retained_intron ENSMUSG00000035458 Tnni3 ENSMUST00000209148 ENSMUSP00000146966 TRANSLATION protein_coding stop - 5 152.0 0.0 1.83 0.0 43.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035458 Tnni3 ENSMUST00000132621 - NO_TRANSLATION retained_intron ENSMUSG00000035458 Tnni3 ENSMUST00000127736 - NO_TRANSLATION retained_intron ENSMUSG00000035458 Tnni3 ENSMUST00000098859 ENSMUSP00000096458 TRANSLATION protein_coding - CCDS39736.1 1 211.0 0.0 5.16 6.8 153.2 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000035458 Tnni3 ENSMUST00000140424 ENSMUSP00000115015 TRANSLATION protein_coding stop - 5 125.0 0.0 3.41 0.0 76.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003423 Pih1d1 ENSMUST00000210139 ENSMUSP00000148186 TRANSLATION protein_coding - CCDS21232.1 1 290.0 0.0 6.18 8.6 161.9 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000003423 Pih1d1 ENSMUST00000211709 ENSMUSP00000147567 TRANSLATION protein_coding stop - 3 175.0 0.0 1.63 0.0 61.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000003423 Pih1d1 ENSMUST00000107811 ENSMUSP00000103441 TRANSLATION protein_coding - CCDS21232.1 1 290.0 0.0 6.18 8.6 161.9 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000003423 Pih1d1 ENSMUST00000209400 - NO_TRANSLATION retained_intron ENSMUSG00000003423 Pih1d1 ENSMUST00000209954 ENSMUSP00000147858 TRANSLATION protein_coding stop - 3 136.0 0.0 2.38 0.0 92.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000003423 Pih1d1 ENSMUST00000209847 ENSMUSP00000147265 TRANSLATION protein_coding stop - 2 99.0 0.0 1.3 0.0 49.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003423 Pih1d1 ENSMUST00000211336 - NO_TRANSLATION retained_intron ENSMUSG00000003423 Pih1d1 ENSMUST00000085375 ENSMUSP00000082490 TRANSLATION protein_coding - CCDS21232.1 1 290.0 0.0 6.18 8.6 161.9 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000003423 Pih1d1 ENSMUST00000211414 ENSMUSP00000147474 TRANSLATION protein_coding stop - 3 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000091652 Vmn1r57 ENSMUST00000228062 ENSMUSP00000153848 TRANSLATION protein_coding - CCDS51984.1 - 310.0 0.0 0.0 0.0 65.7 7.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091652 Vmn1r57 ENSMUST00000227864 - NO_TRANSLATION retained_intron ENSMUSG00000091652 Vmn1r57 ENSMUST00000170780 ENSMUSP00000131917 TRANSLATION protein_coding - CCDS51984.1 - 310.0 0.0 0.0 0.0 65.7 7.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091652 Vmn1r57 ENSMUST00000227798 ENSMUSP00000153876 TRANSLATION protein_coding - CCDS51984.1 - 310.0 0.0 0.0 0.0 65.7 7.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054662 Ano9 ENSMUST00000210763 - NO_TRANSLATION retained_intron ENSMUSG00000054662 Ano9 ENSMUST00000210927 - NO_TRANSLATION retained_intron ENSMUSG00000054662 Ano9 ENSMUST00000210496 - NO_TRANSLATION retained_intron ENSMUSG00000054662 Ano9 ENSMUST00000210085 - NO_TRANSLATION retained_intron ENSMUSG00000054662 Ano9 ENSMUST00000211515 - NO_TRANSLATION retained_intron ENSMUSG00000054662 Ano9 ENSMUST00000067836 ENSMUSP00000067689 TRANSLATION protein_coding - CCDS52438.1 5 747.0 0.0 10.233 0.1 446.1 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000044485 Klk1b11 ENSMUST00000007156 ENSMUSP00000007156 TRANSLATION protein_coding - CCDS21192.1 1 261.0 14.0 4.0 7.8 245.6 0.0 4,-1 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000039257 Vstm2b ENSMUST00000044705 ENSMUSP00000044002 TRANSLATION protein_coding - CCDS21160.1 5 285.0 0.0 1.5925 2.5 43.3 0.0 2,-3 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000039257 Vstm2b ENSMUST00000186352 ENSMUSP00000140241 TRANSLATION protein_coding start/stop - 3 184.0 0.0 0.6625 0.0 0.0 0.0 -3,-4 0.0 1 -2.0 MINOR ENSMUSG00000039257 Vstm2b ENSMUST00000206223 ENSMUSP00000145703 TRANSLATION protein_coding stop - 5 187.0 0.0 0.975 0.0 0.0 0.0 2,-3 0.005 1 -2.0 MINOR ENSMUSG00000039257 Vstm2b ENSMUST00000205845 ENSMUSP00000146231 TRANSLATION protein_coding - CCDS21160.1 1 285.0 0.0 1.5925 2.5 43.3 0.0 2,-3 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000094981 Vmn1r251 ENSMUST00000163096 ENSMUSP00000127012 TRANSLATION protein_coding - CCDS71906.1 - 307.0 0.0 0.0 0.4 59.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095538 Gm21983 ENSMUST00000154724 ENSMUSP00000122859 TRANSLATION nonsense_mediated_decay,RT - - 2 131.0 0.0 2.6 0.0 41.1 0.0 4,-1 0.8022 - -2.0 PRINCIPAL:1 ENSMUSG00000094934 Vmn1r163 ENSMUST00000164537 ENSMUSP00000130288 TRANSLATION protein_coding - CCDS52124.1 - 307.0 0.0 0.0 0.4 53.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000040167 Ikzf5 ENSMUST00000128432 ENSMUSP00000139528 TRANSLATION protein_coding - - 3 107.0 4.0 1.28 0.0 0.0 0.0 -4,-5 0.0038 2 3.096 MINOR ENSMUSG00000040167 Ikzf5 ENSMUST00000121033 ENSMUSP00000113714 TRANSLATION protein_coding - - 1 266.0 10.0 1.38 0.0 0.0 0.0 -4,-5 0.0131 3 4.668 MINOR ENSMUSG00000040167 Ikzf5 ENSMUST00000142349 ENSMUSP00000117823 TRANSLATION protein_coding stop - 5 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0155 1 -2.0 MINOR ENSMUSG00000040167 Ikzf5 ENSMUST00000208966 - NO_TRANSLATION retained_intron ENSMUSG00000040167 Ikzf5 ENSMUST00000207243 ENSMUSP00000146590 TRANSLATION protein_coding stop - 3 129.0 4.0 1.28 0.0 0.0 0.0 -4,-5 0.0038 2 -2.0 MINOR ENSMUSG00000040167 Ikzf5 ENSMUST00000154602 ENSMUSP00000123530 TRANSLATION protein_coding stop - 3 123.0 6.0 1.78 0.0 0.0 0.0 -4,-5 0.0021 2 -2.0 MINOR ENSMUSG00000040167 Ikzf5 ENSMUST00000046306 ENSMUSP00000035583 TRANSLATION protein_coding - CCDS21915.1 1 419.0 17.0 2.48 23.8 0.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000035314 Gdpd5 ENSMUST00000208947 - NO_TRANSLATION retained_intron ENSMUSG00000035314 Gdpd5 ENSMUST00000207530 ENSMUSP00000146887 TRANSLATION protein_coding stop - 2 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035314 Gdpd5 ENSMUST00000208800 ENSMUSP00000146372 TRANSLATION protein_coding stop - 3 103.0 0.0 2.5 0.0 0.0 3.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000035314 Gdpd5 ENSMUST00000037528 ENSMUSP00000036175 TRANSLATION protein_coding - CCDS21481.1 1 607.0 4.0 12.2 11.0 53.9 8.0 -4,-2 1.0 6 13.0 PRINCIPAL:4 ENSMUSG00000035314 Gdpd5 ENSMUST00000207238 - NO_TRANSLATION retained_intron ENSMUSG00000035314 Gdpd5 ENSMUST00000213887 ENSMUSP00000150361 TRANSLATION protein_coding - - 5 612.0 4.0 12.2 11.0 53.9 8.0 -4,-2 0.8011 6 13.0 ALTERNATIVE:1 ENSMUSG00000035314 Gdpd5 ENSMUST00000207617 ENSMUSP00000147184 TRANSLATION protein_coding stop - 3 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0213 - -2.0 MINOR ENSMUSG00000035314 Gdpd5 ENSMUST00000208061 - NO_TRANSLATION retained_intron ENSMUSG00000055571 Or14a259 ENSMUST00000213869 ENSMUSP00000149876 TRANSLATION protein_coding - CCDS21427.1 5 319.0 0.0 0.8 0.3 137.2 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055571 Or14a259 ENSMUST00000069236 ENSMUSP00000068650 TRANSLATION protein_coding - CCDS21427.1 - 319.0 0.0 0.8 0.3 137.2 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055571 Or14a259 ENSMUST00000216700 ENSMUSP00000149883 TRANSLATION protein_coding - CCDS21427.1 5 319.0 0.0 0.8 0.3 137.2 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055571 Or14a259 ENSMUST00000213255 ENSMUSP00000149762 TRANSLATION protein_coding - CCDS21427.1 5 319.0 0.0 0.8 0.3 137.2 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037541 Shank2 ENSMUST00000213146 ENSMUSP00000149134 TRANSLATION protein_coding stop - 5 816.0 0.0 12.75 0.0 223.8 0.0 -4,-5 0.0981 14 -2.0 MINOR ENSMUSG00000037541 Shank2 ENSMUST00000105900 ENSMUSP00000101520 TRANSLATION protein_coding - CCDS85484.1 5 1472.0 3.0 5.9 2.8 148.7 0.0 -4,-7 0.3838 35 4.0 MINOR ENSMUSG00000037541 Shank2 ENSMUST00000105902 ENSMUSP00000101522 TRANSLATION protein_coding - - 5 1841.0 3.0 13.15 1.2 296.2 0.0 -4,-5 0.9973 40 15.111 PRINCIPAL:1 ENSMUSG00000037541 Shank2 ENSMUST00000136979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037541 Shank2 ENSMUST00000146006 ENSMUSP00000146440 TRANSLATION protein_coding - CCDS40201.1 2 1262.0 3.0 3.15 1.1 105.5 0.0 -4,-5 0.1831 29 3.056 MINOR ENSMUSG00000037541 Shank2 ENSMUST00000097929 ENSMUSP00000095542 TRANSLATION protein_coding - - 5 1255.0 3.0 3.15 0.1 105.5 0.0 -4,-5 0.0251 29 3.0 MINOR ENSMUSG00000037541 Shank2 ENSMUST00000239495 ENSMUSP00000159313 TRANSLATION protein_coding - - - 1281.0 3.0 3.9 1.1 105.5 0.0 -4,-2 0.1173 29 3.056 MINOR ENSMUSG00000030894 Tpp1 ENSMUST00000033184 ENSMUSP00000033184 TRANSLATION protein_coding - CCDS21661.1 1 562.0 10.0 11.455 4.0 0.0 0.0 2,-2 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000030894 Tpp1 ENSMUST00000210730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030894 Tpp1 ENSMUST00000210018 - NO_TRANSLATION retained_intron ENSMUSG00000030894 Tpp1 ENSMUST00000211659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030894 Tpp1 ENSMUST00000210066 ENSMUSP00000147729 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.375 0.0 0.0 0.0 2,-2 0.0654 - -2.0 MINOR ENSMUSG00000030894 Tpp1 ENSMUST00000211226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030894 Tpp1 ENSMUST00000211204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030894 Tpp1 ENSMUST00000210840 - NO_TRANSLATION retained_intron ENSMUSG00000030894 Tpp1 ENSMUST00000210395 - NO_TRANSLATION retained_intron ENSMUSG00000030894 Tpp1 ENSMUST00000211560 - NO_TRANSLATION retained_intron ENSMUSG00000074221 Zfp568 ENSMUST00000209185 - NO_TRANSLATION retained_intron ENSMUSG00000074221 Zfp568 ENSMUST00000177931 ENSMUSP00000137438 TRANSLATION protein_coding - CCDS52176.1 5 670.0 44.0 2.8 0.3 378.2 0.0 -4,-7 0.9308 - 14.0 ALTERNATIVE:2 ENSMUSG00000074221 Zfp568 ENSMUST00000148442 ENSMUSP00000118387 TRANSLATION protein_coding - CCDS21077.1 1 671.0 44.0 2.8 0.3 378.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000074221 Zfp568 ENSMUST00000146074 ENSMUSP00000118823 TRANSLATION protein_coding - CCDS52176.1 1 670.0 44.0 2.8 0.3 378.2 0.0 -4,-7 0.9308 - 14.0 ALTERNATIVE:2 ENSMUSG00000074221 Zfp568 ENSMUST00000074322 ENSMUSP00000073930 TRANSLATION protein_coding - CCDS21077.1 5 671.0 44.0 2.8 0.3 378.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000074221 Zfp568 ENSMUST00000207940 ENSMUSP00000147124 TRANSLATION protein_coding stop - 5 131.0 0.0 1.8 0.0 84.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000069806 Cacng7 ENSMUST00000092891 ENSMUSP00000090567 TRANSLATION protein_coding - CCDS39725.1 1 275.0 0.0 1.268 27.3 74.9 0.0 -1,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000069806 Cacng7 ENSMUST00000203497 - NO_TRANSLATION retained_intron ENSMUSG00000030801 Kat8 ENSMUST00000205357 ENSMUSP00000145731 TRANSLATION protein_coding stop - 5 176.0 1.0 3.25 0.0 59.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000030801 Kat8 ENSMUST00000206071 - NO_TRANSLATION retained_intron ENSMUSG00000030801 Kat8 ENSMUST00000206364 - NO_TRANSLATION retained_intron ENSMUSG00000030801 Kat8 ENSMUST00000033070 ENSMUSP00000033070 TRANSLATION protein_coding - CCDS21885.1 1 458.0 28.0 10.35 8.0 366.0 0.0 -2,-3 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000050266 Or52b1 ENSMUST00000061920 ENSMUSP00000061272 TRANSLATION protein_coding - CCDS52349.1 - 315.0 0.0 1.0 9.2 365.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050266 Or52b1 ENSMUST00000211006 ENSMUSP00000147414 TRANSLATION protein_coding - CCDS52349.1 2 315.0 0.0 1.0 9.2 365.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050266 Or52b1 ENSMUST00000216230 ENSMUSP00000150831 TRANSLATION protein_coding - CCDS52349.1 5 315.0 0.0 1.0 9.2 365.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030858 Fam24b ENSMUST00000188899 ENSMUSP00000139545 TRANSLATION protein_coding - CCDS21912.1 1 119.0 0.0 1.0 0.1 55.6 1.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030858 Fam24b ENSMUST00000033146 ENSMUSP00000033146 TRANSLATION protein_coding - CCDS21912.1 5 119.0 0.0 1.0 0.1 55.6 1.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000090619 Vmn2r60 ENSMUST00000233771 ENSMUSP00000156805 TRANSLATION protein_coding - CCDS52215.1 - 853.0 4.0 3.02 0.0 399.4 5.0 2,-3 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000090619 Vmn2r60 ENSMUST00000166447 ENSMUSP00000128493 TRANSLATION protein_coding - - 5 853.0 4.0 2.86 0.0 399.4 5.0 1,-5 0.575 - 11.682 ALTERNATIVE:2 ENSMUSG00000090619 Vmn2r60 ENSMUST00000233266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096073 Vmn1r166 ENSMUST00000164045 ENSMUSP00000126882 TRANSLATION protein_coding - CCDS52128.1 - 306.0 0.0 0.0 0.4 56.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030733 Sh2b1 ENSMUST00000205340 ENSMUSP00000145953 TRANSLATION protein_coding - CCDS85412.1 1 670.0 0.0 4.6 6.8 185.5 0.0 -4,-5 0.9452 14 9.683 ALTERNATIVE:1 ENSMUSG00000030733 Sh2b1 ENSMUST00000205497 ENSMUSP00000145842 TRANSLATION protein_coding - CCDS85410.1 1 724.0 0.0 4.85 4.1 185.5 0.0 -4,-5 0.731 14 9.077 MINOR ENSMUSG00000030733 Sh2b1 ENSMUST00000032978 ENSMUSP00000032978 TRANSLATION protein_coding - CCDS40126.1 1 682.0 0.0 4.95 7.3 185.5 0.0 -4,-5 1.0 16 10.589 PRINCIPAL:3 ENSMUSG00000030733 Sh2b1 ENSMUST00000205733 ENSMUSP00000145754 TRANSLATION protein_coding - CCDS85411.1 1 756.0 0.0 4.6 8.3 185.5 0.0 -4,-5 0.9119 13 10.298 ALTERNATIVE:1 ENSMUSG00000030733 Sh2b1 ENSMUST00000205440 ENSMUSP00000145554 TRANSLATION protein_coding - CCDS85412.1 1 670.0 0.0 4.6 6.8 185.5 0.0 -4,-5 0.9452 14 9.683 ALTERNATIVE:1 ENSMUSG00000030733 Sh2b1 ENSMUST00000206515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030733 Sh2b1 ENSMUST00000206664 ENSMUSP00000146121 TRANSLATION nonsense_mediated_decay - - 1 443.0 0.0 2.6 0.0 132.6 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000030733 Sh2b1 ENSMUST00000206643 ENSMUSP00000146229 TRANSLATION protein_coding stop - 2 73.0 0.0 0.6 0.0 70.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030733 Sh2b1 ENSMUST00000205889 ENSMUSP00000146282 TRANSLATION protein_coding - CCDS85410.1 1 724.0 0.0 4.85 4.1 185.5 0.0 -4,-5 0.731 14 9.077 MINOR ENSMUSG00000044952 Kctd21 ENSMUST00000054107 ENSMUSP00000051316 TRANSLATION protein_coding - CCDS21456.1 1 260.0 0.0 1.0 22.7 73.1 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000030431 Tmem238 ENSMUST00000168578 ENSMUSP00000130452 TRANSLATION protein_coding - CCDS51977.1 1 176.0 0.0 0.6 2.4 99.2 0.0 -1,-4 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000030431 Tmem238 ENSMUST00000206315 ENSMUSP00000146208 TRANSLATION nonsense_mediated_decay start - 3 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000101638 Scgb1b11 ENSMUST00000186031 ENSMUSP00000140214 TRANSLATION protein_coding - - 5 93.0 0.0 1.48 0.0 57.1 0.0 3,-2 0.8204 - 12.0 PRINCIPAL:1 ENSMUSG00000048078 Tenm4 ENSMUST00000107162 ENSMUSP00000102780 TRANSLATION protein_coding - CCDS80754.1 1 2825.0 0.0 15.86 11.1 732.0 0.0 -4,-6 1.0 43 13.71 PRINCIPAL:1 ENSMUSG00000048078 Tenm4 ENSMUST00000107166 ENSMUSP00000102784 TRANSLATION protein_coding - CCDS40024.1 1 2796.0 0.0 16.322 3.1 425.5 0.0 -4,-5 0.487 43 6.624 MINOR ENSMUSG00000048078 Tenm4 ENSMUST00000133770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048078 Tenm4 ENSMUST00000147659 - NO_TRANSLATION retained_intron ENSMUSG00000048078 Tenm4 ENSMUST00000131541 - NO_TRANSLATION retained_intron ENSMUSG00000048078 Tenm4 ENSMUST00000138760 ENSMUSP00000114281 TRANSLATION protein_coding stop - 5 101.0 0.0 0.0 0.0 99.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000048078 Tenm4 ENSMUST00000130299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048078 Tenm4 ENSMUST00000129445 - NO_TRANSLATION retained_intron ENSMUSG00000048078 Tenm4 ENSMUST00000140140 ENSMUSP00000145766 TRANSLATION protein_coding start - 3 127.0 0.0 1.38 0.0 51.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048078 Tenm4 ENSMUST00000107165 ENSMUSP00000102783 TRANSLATION protein_coding - CCDS80753.1 1 2833.0 0.0 16.322 1.0 738.1 0.0 -4,-5 0.6235 43 12.0 MINOR ENSMUSG00000048078 Tenm4 ENSMUST00000129737 ENSMUSP00000120529 TRANSLATION protein_coding stop - 5 125.0 0.0 0.0 0.0 99.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000048078 Tenm4 ENSMUST00000144263 - NO_TRANSLATION retained_intron ENSMUSG00000005686 Ampd3 ENSMUST00000148292 ENSMUSP00000122657 TRANSLATION protein_coding stop - 3 184.0 0.0 1.375 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005686 Ampd3 ENSMUST00000176487 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005686 Ampd3 ENSMUST00000213373 ENSMUSP00000149655 TRANSLATION protein_coding - - 5 775.0 4.0 12.639 10.0 458.5 0.0 -4,-5 0.7838 16 12.367 ALTERNATIVE:1 ENSMUSG00000005686 Ampd3 ENSMUST00000005829 ENSMUSP00000005829 TRANSLATION protein_coding - CCDS21747.1 1 766.0 4.0 12.639 12.4 458.5 0.0 -4,-5 1.0 16 13.0 PRINCIPAL:4 ENSMUSG00000005686 Ampd3 ENSMUST00000143786 ENSMUSP00000120983 TRANSLATION protein_coding stop - 2 137.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005686 Ampd3 ENSMUST00000147587 ENSMUSP00000121238 TRANSLATION protein_coding stop - 2 111.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000005686 Ampd3 ENSMUST00000106686 - NO_TRANSLATION retained_intron ENSMUSG00000005686 Ampd3 ENSMUST00000170374 ENSMUSP00000130495 TRANSLATION protein_coding - CCDS21747.1 1 766.0 4.0 12.639 12.4 458.5 0.0 -4,-5 1.0 16 13.0 PRINCIPAL:4 ENSMUSG00000030650 Tmc5 ENSMUST00000121715 ENSMUSP00000112434 TRANSLATION protein_coding - CCDS52374.1 1 967.0 0.0 0.0 0.1 134.8 12.0 -4,-5 0.2929 8 2.0 ALTERNATIVE:2 ENSMUSG00000030650 Tmc5 ENSMUST00000121744 ENSMUSP00000114137 TRANSLATION protein_coding - CCDS52374.1 1 967.0 0.0 0.0 0.1 134.8 12.0 -4,-5 0.2929 8 2.0 ALTERNATIVE:2 ENSMUSG00000030650 Tmc5 ENSMUST00000098088 ENSMUSP00000095694 TRANSLATION protein_coding - CCDS52374.1 5 967.0 0.0 0.0 0.1 134.8 12.0 -4,-5 0.2929 8 2.0 ALTERNATIVE:2 ENSMUSG00000030650 Tmc5 ENSMUST00000057320 ENSMUSP00000049784 TRANSLATION protein_coding - CCDS21773.1 1 757.0 0.0 0.0 3.2 134.8 12.0 -4,-5 1.0 4 3.0 PRINCIPAL:2 ENSMUSG00000030650 Tmc5 ENSMUST00000155572 ENSMUSP00000118541 TRANSLATION protein_coding stop - 2 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057177 Gsk3a ENSMUST00000206654 - NO_TRANSLATION retained_intron ENSMUSG00000057177 Gsk3a ENSMUST00000108411 ENSMUSP00000104049 TRANSLATION protein_coding - - 5 486.0 20.0 8.75 0.0 235.3 0.0 -4,-5 0.2303 11 12.0 ALTERNATIVE:2 ENSMUSG00000057177 Gsk3a ENSMUST00000071739 ENSMUSP00000071654 TRANSLATION protein_coding - CCDS20976.1 2 490.0 20.0 8.75 0.0 235.3 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:2 ENSMUSG00000094063 Or51q1c ENSMUST00000218325 ENSMUSP00000151996 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 11.5 396.3 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094063 Or51q1c ENSMUST00000209757 ENSMUSP00000148160 TRANSLATION protein_coding - CCDS21601.1 - 321.0 0.0 1.0 1.5 396.3 7.0 -4,-7 0.611 - 12.144 MINOR ENSMUSG00000019254 Ppp1r12c ENSMUST00000136863 - NO_TRANSLATION retained_intron ENSMUSG00000019254 Ppp1r12c ENSMUST00000133374 - NO_TRANSLATION retained_intron ENSMUSG00000019254 Ppp1r12c ENSMUST00000153101 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019254 Ppp1r12c ENSMUST00000154710 - NO_TRANSLATION retained_intron ENSMUSG00000019254 Ppp1r12c ENSMUST00000013886 ENSMUSP00000013886 TRANSLATION protein_coding - CCDS39735.1 1 782.0 0.0 7.95 0.4 209.9 0.0 -4,-5 1.0 23 12.0 PRINCIPAL:1 ENSMUSG00000019254 Ppp1r12c ENSMUST00000147679 - NO_TRANSLATION retained_intron ENSMUSG00000019254 Ppp1r12c ENSMUST00000145689 - NO_TRANSLATION retained_intron ENSMUSG00000019254 Ppp1r12c ENSMUST00000124248 ENSMUSP00000120029 TRANSLATION protein_coding start - 5 704.0 0.0 7.55 0.0 209.1 0.0 -4,-5 0.0333 23 -2.0 MINOR ENSMUSG00000019254 Ppp1r12c ENSMUST00000127329 - NO_TRANSLATION retained_intron ENSMUSG00000019254 Ppp1r12c ENSMUST00000125220 ENSMUSP00000146089 TRANSLATION nonsense_mediated_decay start - 1 102.0 0.0 0.8 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000019254 Ppp1r12c ENSMUST00000134738 - NO_TRANSLATION retained_intron ENSMUSG00000108995 Or5p61 ENSMUST00000208296 ENSMUSP00000147194 TRANSLATION protein_coding - CCDS85375.1 - 317.0 0.0 1.0 0.0 162.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073915 Or52e7 ENSMUST00000219602 ENSMUSP00000151474 TRANSLATION protein_coding - CCDS21637.1 5 317.0 0.0 1.0 0.1 376.3 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073915 Or52e7 ENSMUST00000215533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073915 Or52e7 ENSMUST00000219042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073915 Or52e7 ENSMUST00000098162 ENSMUSP00000095765 TRANSLATION protein_coding - CCDS21637.1 - 317.0 0.0 1.0 0.1 376.3 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030730 Atp2a1 ENSMUST00000032974 ENSMUSP00000032974 TRANSLATION protein_coding - CCDS40125.1 1 994.0 14.0 19.58 24.3 479.2 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000030730 Atp2a1 ENSMUST00000146973 ENSMUSP00000119018 TRANSLATION protein_coding start - 2 146.0 1.0 3.5 0.0 67.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000090715 Vmn1r167 ENSMUST00000164527 ENSMUSP00000129193 TRANSLATION protein_coding - CCDS52130.1 - 315.0 0.0 0.0 0.3 61.4 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000090715 Vmn1r167 ENSMUST00000227713 ENSMUSP00000153774 TRANSLATION protein_coding - CCDS52130.1 - 315.0 0.0 0.0 0.3 61.4 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094532 Vmn1r259 ENSMUST00000168926 ENSMUSP00000131872 TRANSLATION protein_coding - CCDS52123.1 - 305.0 0.0 0.0 0.4 56.7 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054499 Dedd2 ENSMUST00000058702 ENSMUSP00000049763 TRANSLATION protein_coding - CCDS20973.1 1 330.0 0.0 0.0 2.8 72.1 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000054499 Dedd2 ENSMUST00000205271 ENSMUSP00000146052 TRANSLATION protein_coding - CCDS20973.1 5 330.0 0.0 0.0 2.8 72.1 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000054499 Dedd2 ENSMUST00000206498 - NO_TRANSLATION retained_intron ENSMUSG00000054499 Dedd2 ENSMUST00000206750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060279 Ap2a1 ENSMUST00000207554 - NO_TRANSLATION retained_intron ENSMUSG00000060279 Ap2a1 ENSMUST00000107857 ENSMUSP00000103489 TRANSLATION protein_coding - CCDS52238.1 1 955.0 0.0 19.65 12.9 713.9 0.0 -4,-6 1.0 30 15.0 PRINCIPAL:1 ENSMUSG00000060279 Ap2a1 ENSMUST00000166972 ENSMUSP00000127842 TRANSLATION protein_coding - CCDS52239.1 1 977.0 0.0 19.65 8.0 713.9 0.0 -4,-6 0.8353 30 13.764 MINOR ENSMUSG00000060279 Ap2a1 ENSMUST00000208285 - NO_TRANSLATION retained_intron ENSMUSG00000060279 Ap2a1 ENSMUST00000208472 ENSMUSP00000146814 TRANSLATION protein_coding start/stop - 5 317.0 0.0 4.6 0.0 163.7 0.0 -4,-5 0.0012 10 -2.0 MINOR ENSMUSG00000060279 Ap2a1 ENSMUST00000208405 ENSMUSP00000146398 TRANSLATION nonsense_mediated_decay - - 5 38.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000060279 Ap2a1 ENSMUST00000209067 - NO_TRANSLATION retained_intron ENSMUSG00000060279 Ap2a1 ENSMUST00000208813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060279 Ap2a1 ENSMUST00000207814 ENSMUSP00000146338 TRANSLATION nonsense_mediated_decay start - 2 57.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000013668 4933402N03Rik ENSMUST00000070980 ENSMUSP00000070291 TRANSLATION protein_coding - CCDS40156.1 1 329.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8908 1 0.0 PRINCIPAL:1 ENSMUSG00000030486 Zfp108 ENSMUST00000206777 ENSMUSP00000145928 TRANSLATION protein_coding - CCDS85236.1 1 642.0 52.0 1.0 0.0 336.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000030486 Zfp108 ENSMUST00000072713 ENSMUSP00000072496 TRANSLATION protein_coding - - 5 642.0 52.0 1.0 0.0 336.6 0.0 -4,-5 0.7375 - 14.0 ALTERNATIVE:2 ENSMUSG00000030486 Zfp108 ENSMUST00000205982 ENSMUSP00000145844 TRANSLATION protein_coding - CCDS85236.1 1 642.0 52.0 1.0 0.0 336.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000087376 Gm15517 ENSMUST00000187314 - NO_TRANSLATION retained_intron ENSMUSG00000087376 Gm15517 ENSMUST00000124863 ENSMUSP00000147626 TRANSLATION protein_coding - - 1 28.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.6648 - 6.0 PRINCIPAL:1 ENSMUSG00000087376 Gm15517 ENSMUST00000147088 - NO_TRANSLATION retained_intron ENSMUSG00000073838 Tufm ENSMUST00000098048 ENSMUSP00000095656 TRANSLATION protein_coding - CCDS21830.1 1 452.0 14.0 9.96 16.1 319.5 0.0 -4,0 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000073838 Tufm ENSMUST00000205346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073838 Tufm ENSMUST00000106392 ENSMUSP00000102000 TRANSLATION protein_coding - CCDS52398.1 2 435.0 14.0 8.03 0.0 239.2 0.0 -4,0 0.0409 22 9.324 MINOR ENSMUSG00000073838 Tufm ENSMUST00000206055 ENSMUSP00000145664 TRANSLATION protein_coding start/stop - 5 118.0 5.0 3.08 0.0 0.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000073838 Tufm ENSMUST00000206572 ENSMUSP00000145924 TRANSLATION protein_coding start - 2 116.0 0.0 2.75 0.0 83.9 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000073838 Tufm ENSMUST00000205478 - NO_TRANSLATION retained_intron ENSMUSG00000048921 Zfp689 ENSMUST00000053392 ENSMUSP00000056610 TRANSLATION protein_coding - CCDS21867.1 1 500.0 43.0 2.8 8.7 279.2 0.0 -4,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000048921 Zfp689 ENSMUST00000106299 ENSMUSP00000101906 TRANSLATION protein_coding - - 1 360.0 23.0 1.8 0.0 192.8 0.0 -4,-2 0.0004 - 4.674 MINOR ENSMUSG00000110040 Gm49369 ENSMUST00000133843 ENSMUSP00000117247 TRANSLATION protein_coding,RT start/stop - 5 278.0 0.0 5.85 0.0 242.8 0.0 -4,-5 0.7517 - -2.0 PRINCIPAL:5 ENSMUSG00000110040 Gm49369 ENSMUST00000209263 ENSMUSP00000148223 TRANSLATION protein_coding,RT start/stop - 5 273.0 0.0 5.0 0.0 223.0 0.0 -4,-5 0.0376 - -2.0 ALTERNATIVE:2 ENSMUSG00000078768 Zfp566 ENSMUST00000088785 ENSMUSP00000086164 TRANSLATION protein_coding - CCDS52177.1 1 386.0 28.0 0.8 1.4 242.2 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000078768 Zfp566 ENSMUST00000182248 - NO_TRANSLATION retained_intron ENSMUSG00000049848 Ceacam19 ENSMUST00000052605 ENSMUSP00000057433 TRANSLATION protein_coding - CCDS20915.1 1 271.0 0.0 1.4 0.1 30.1 0.0 3,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000030647 Ndufc2 ENSMUST00000032882 ENSMUSP00000032882 TRANSLATION protein_coding - CCDS21457.1 1 120.0 0.0 2.5 5.8 164.5 1.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000030647 Ndufc2 ENSMUST00000149122 ENSMUSP00000146005 TRANSLATION protein_coding - - 2 108.0 0.0 2.0 0.0 128.2 1.0 -4,-7 0.0004 4 8.622 MINOR ENSMUSG00000066122 Or13a17 ENSMUST00000084454 ENSMUSP00000081492 TRANSLATION protein_coding - CCDS21983.1 - 311.0 0.0 1.0 1.1 169.8 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000066122 Or13a17 ENSMUST00000214637 ENSMUSP00000149309 TRANSLATION protein_coding - CCDS21983.1 3 311.0 0.0 1.0 1.1 169.8 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000038646 Ramac ENSMUST00000042166 ENSMUSP00000039065 TRANSLATION protein_coding - CCDS21406.1 1 119.0 0.0 1.75 14.0 85.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038646 Ramac ENSMUST00000118190 ENSMUSP00000113339 TRANSLATION protein_coding - CCDS21406.1 1 119.0 0.0 1.75 14.0 85.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038646 Ramac ENSMUST00000133034 ENSMUSP00000123342 TRANSLATION protein_coding stop - 2 35.0 0.0 1.0 0.0 36.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060974 Or12j3 ENSMUST00000074177 ENSMUSP00000073808 TRANSLATION protein_coding - CCDS21974.1 - 307.0 0.0 1.0 8.3 162.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060974 Or12j3 ENSMUST00000216727 ENSMUSP00000149475 TRANSLATION protein_coding - CCDS21974.1 5 307.0 0.0 1.0 8.3 162.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000090714 Zscan4d ENSMUST00000067210 ENSMUSP00000066504 TRANSLATION protein_coding - CCDS52013.1 1 506.0 15.0 0.32 0.0 113.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030521 Mphosph10 ENSMUST00000205516 - NO_TRANSLATION retained_intron ENSMUSG00000030521 Mphosph10 ENSMUST00000032735 ENSMUSP00000032735 TRANSLATION protein_coding - CCDS21333.1 1 681.0 0.0 0.72 4.8 709.6 0.0 -4,0 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000030521 Mphosph10 ENSMUST00000206047 - NO_TRANSLATION retained_intron ENSMUSG00000025326 Ube3a ENSMUST00000201409 ENSMUSP00000144220 TRANSLATION protein_coding stop - 3 313.0 0.0 2.096 0.0 68.1 0.0 -4,-6 0.0017 7 -2.0 MINOR ENSMUSG00000025326 Ube3a ENSMUST00000200949 - NO_TRANSLATION retained_intron ENSMUSG00000025326 Ube3a ENSMUST00000202945 ENSMUSP00000143962 TRANSLATION protein_coding - - 1 762.0 0.0 8.28 0.0 246.9 0.0 -4,-5 0.0043 22 2.866 MINOR ENSMUSG00000025326 Ube3a ENSMUST00000200781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025326 Ube3a ENSMUST00000202685 - NO_TRANSLATION retained_intron ENSMUSG00000025326 Ube3a ENSMUST00000207686 ENSMUSP00000146524 TRANSLATION protein_coding stop - 5 126.0 0.0 2.096 0.0 68.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000025326 Ube3a ENSMUST00000208313 ENSMUSP00000146673 TRANSLATION protein_coding stop - 5 78.0 0.0 1.896 0.0 67.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025326 Ube3a ENSMUST00000200758 ENSMUSP00000143859 TRANSLATION protein_coding - CCDS39973.1 1 870.0 0.0 10.346 9.5 378.4 0.0 -4,-6 1.0 25 11.0 PRINCIPAL:4 ENSMUSG00000025326 Ube3a ENSMUST00000200709 ENSMUSP00000144148 TRANSLATION protein_coding stop - 3 40.0 0.0 0.566 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025326 Ube3a ENSMUST00000107537 ENSMUSP00000103161 TRANSLATION protein_coding - CCDS80733.1 1 849.0 0.0 10.28 8.3 378.4 0.0 -4,-5 0.9332 25 10.445 ALTERNATIVE:1 ENSMUSG00000025326 Ube3a ENSMUST00000202288 ENSMUSP00000144645 TRANSLATION protein_coding start - 5 143.0 0.0 3.75 0.0 140.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000025326 Ube3a ENSMUST00000202207 - NO_TRANSLATION retained_intron ENSMUSG00000025326 Ube3a ENSMUST00000201794 ENSMUSP00000144453 TRANSLATION protein_coding stop - 3 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000025326 Ube3a ENSMUST00000202247 ENSMUSP00000144398 TRANSLATION protein_coding start - 3 192.0 0.0 4.5 0.0 198.3 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000025326 Ube3a ENSMUST00000202776 - NO_TRANSLATION retained_intron ENSMUSG00000025326 Ube3a ENSMUST00000202440 ENSMUSP00000143896 TRANSLATION protein_coding stop - 5 49.0 0.0 1.25 0.0 62.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025326 Ube3a ENSMUST00000201162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025326 Ube3a ENSMUST00000201480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051735 Rinl ENSMUST00000207345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051735 Rinl ENSMUST00000059857 ENSMUSP00000058447 TRANSLATION protein_coding - CCDS21056.1 1 563.0 0.0 0.0 0.0 67.1 0.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000051735 Rinl ENSMUST00000207201 - NO_TRANSLATION retained_intron ENSMUSG00000051735 Rinl ENSMUST00000208149 - NO_TRANSLATION retained_intron ENSMUSG00000051735 Rinl ENSMUST00000207462 ENSMUSP00000146741 TRANSLATION protein_coding start - 2 117.0 0.0 0.0 0.0 45.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051735 Rinl ENSMUST00000209035 ENSMUSP00000146576 TRANSLATION protein_coding - CCDS21056.1 1 563.0 0.0 0.0 0.0 67.1 0.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000042105 Inpp5f ENSMUST00000043138 ENSMUSP00000045910 TRANSLATION protein_coding - CCDS21899.1 1 1132.0 0.0 10.17 5.7 398.1 0.0 -4,-6 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000042105 Inpp5f ENSMUST00000148815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042105 Inpp5f ENSMUST00000098007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042105 Inpp5f ENSMUST00000202419 ENSMUSP00000143952 TRANSLATION nonsense_mediated_decay - - 5 121.0 0.0 0.0 0.0 35.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000042105 Inpp5f ENSMUST00000129085 - NO_TRANSLATION retained_intron ENSMUSG00000042105 Inpp5f ENSMUST00000118605 ENSMUSP00000113700 TRANSLATION protein_coding - CCDS85430.1 1 505.0 0.0 3.83 0.3 50.3 0.0 -4,-7 0.0138 7 0.0 MINOR ENSMUSG00000042105 Inpp5f ENSMUST00000151237 ENSMUSP00000146197 TRANSLATION protein_coding - - 1 441.0 0.0 1.75 0.0 0.0 0.0 -4,-2 0.0 6 0.0 MINOR ENSMUSG00000042105 Inpp5f ENSMUST00000142075 - NO_TRANSLATION retained_intron ENSMUSG00000042105 Inpp5f ENSMUST00000130789 - NO_TRANSLATION retained_intron ENSMUSG00000095984 Vmn1r256 ENSMUST00000174775 ENSMUSP00000133911 TRANSLATION protein_coding - CCDS71910.1 - 306.0 0.0 0.0 0.4 57.9 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030742 Lat ENSMUST00000206731 - NO_TRANSLATION retained_intron ENSMUSG00000030742 Lat ENSMUST00000206793 ENSMUSP00000145773 TRANSLATION protein_coding - - 5 232.0 0.0 0.0 0.0 352.8 0.0 2,-3 0.0547 4 3.72 MINOR ENSMUSG00000030742 Lat ENSMUST00000032997 ENSMUSP00000032997 TRANSLATION protein_coding - CCDS21825.1 1 242.0 0.0 0.0 0.1 390.8 0.0 2,-3 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000030742 Lat ENSMUST00000205398 - NO_TRANSLATION retained_intron ENSMUSG00000030742 Lat ENSMUST00000205642 ENSMUSP00000146191 TRANSLATION protein_coding stop - 5 105.0 0.0 0.0 0.0 150.1 0.0 2,-3 0.0045 1 -2.0 MINOR ENSMUSG00000030742 Lat ENSMUST00000205426 - NO_TRANSLATION retained_intron ENSMUSG00000073924 Or52p1 ENSMUST00000215575 ENSMUSP00000149625 TRANSLATION protein_coding - - 3 321.0 0.0 1.0 6.7 349.4 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073924 Or52p1 ENSMUST00000098172 ENSMUSP00000095774 TRANSLATION protein_coding - CCDS21622.1 - 329.0 0.0 1.0 2.8 349.4 7.0 -4,-7 0.8617 - 12.632 MINOR ENSMUSG00000054753 AU018091 ENSMUST00000171749 ENSMUSP00000126800 TRANSLATION protein_coding - CCDS39724.2 1 684.0 0.0 5.12 0.1 188.7 15.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054753 AU018091 ENSMUST00000205185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054753 AU018091 ENSMUST00000203937 ENSMUSP00000144796 TRANSLATION protein_coding start/stop - 2 178.0 0.0 1.1 0.0 32.5 5.0 -4,-5 0.0034 - -2.0 MINOR ENSMUSG00000073959 Or52r1c ENSMUST00000098210 ENSMUSP00000095811 TRANSLATION protein_coding - CCDS21560.1 - 319.0 0.0 1.0 0.3 367.7 7.0 -4,-7 0.52 - 12.0 MINOR ENSMUSG00000073959 Or52r1c ENSMUST00000214215 ENSMUSP00000151043 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 13.4 367.7 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031016 Wee1 ENSMUST00000033326 ENSMUSP00000033326 TRANSLATION protein_coding - CCDS21743.1 1 646.0 19.0 5.95 9.3 203.5 0.0 -4,0 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000090219 Or51a42 ENSMUST00000074064 ENSMUSP00000073707 TRANSLATION protein_coding - CCDS21605.1 5 314.0 0.0 1.0 11.5 412.6 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062042 Or14a256 ENSMUST00000078588 ENSMUSP00000077662 TRANSLATION protein_coding - CCDS21433.1 - 335.0 0.0 0.8 0.4 129.6 0.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000092416 Zfp141 ENSMUST00000174407 ENSMUSP00000133899 TRANSLATION protein_coding - CCDS85276.1 1 685.0 40.0 2.4 0.0 314.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000092416 Zfp141 ENSMUST00000173489 ENSMUSP00000145574 TRANSLATION protein_coding stop - 3 94.0 0.0 1.6 0.0 84.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000092416 Zfp141 ENSMUST00000174489 - NO_TRANSLATION retained_intron ENSMUSG00000092416 Zfp141 ENSMUST00000173439 - NO_TRANSLATION retained_intron ENSMUSG00000066586 Scgb2b26 ENSMUST00000085623 ENSMUSP00000082763 TRANSLATION protein_coding - CCDS21133.1 1 112.0 0.0 2.15 0.1 92.8 0.0 1,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000110221 Gm36210 ENSMUST00000210663 ENSMUSP00000147734 TRANSLATION protein_coding - - 5 229.0 0.0 1.0 1.1 0.0 0.0 -4,-5 0.6876 - 7.0 PRINCIPAL:1 ENSMUSG00000037552 Plekhg2 ENSMUST00000147887 ENSMUSP00000122050 TRANSLATION protein_coding stop - 3 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037552 Plekhg2 ENSMUST00000147767 - NO_TRANSLATION retained_intron ENSMUSG00000037552 Plekhg2 ENSMUST00000147362 ENSMUSP00000118217 TRANSLATION protein_coding stop - 3 205.0 0.0 3.18 0.0 82.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037552 Plekhg2 ENSMUST00000121085 ENSMUSP00000113449 TRANSLATION protein_coding - - 2 1365.0 0.0 7.564 0.0 170.9 0.0 -4,-5 0.3442 7 8.0 ALTERNATIVE:2 ENSMUSG00000037552 Plekhg2 ENSMUST00000119990 ENSMUSP00000112881 TRANSLATION protein_coding - CCDS52162.1 1 1340.0 0.0 7.564 0.0 170.9 0.0 -4,-5 0.9981 7 8.0 ALTERNATIVE:2 ENSMUSG00000037552 Plekhg2 ENSMUST00000144700 ENSMUSP00000115651 TRANSLATION protein_coding stop - 1 912.0 0.0 7.564 0.0 170.9 0.0 -4,-5 0.1147 2 -2.0 MINOR ENSMUSG00000037552 Plekhg2 ENSMUST00000129145 - NO_TRANSLATION retained_intron ENSMUSG00000037552 Plekhg2 ENSMUST00000128015 - NO_TRANSLATION retained_intron ENSMUSG00000037552 Plekhg2 ENSMUST00000152281 ENSMUSP00000117062 TRANSLATION nonsense_mediated_decay - - 5 56.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037552 Plekhg2 ENSMUST00000094644 ENSMUSP00000092228 TRANSLATION protein_coding - CCDS21040.2 1 1341.0 0.0 7.564 0.0 170.9 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:4 ENSMUSG00000052889 Prkcb ENSMUST00000127910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052889 Prkcb ENSMUST00000064921 ENSMUSP00000064812 TRANSLATION protein_coding - CCDS85402.1 1 671.0 33.0 12.9 16.5 455.1 0.0 -4,-5 1.0 14 17.354 PRINCIPAL:4 ENSMUSG00000052889 Prkcb ENSMUST00000064989 ENSMUSP00000070019 TRANSLATION protein_coding - CCDS21815.1 1 673.0 33.0 13.1 17.5 440.0 0.0 -4,-5 0.9206 14 18.0 ALTERNATIVE:1 ENSMUSG00000052889 Prkcb ENSMUST00000143692 ENSMUSP00000138788 TRANSLATION nonsense_mediated_decay - CCDS21815.1 5 673.0 33.0 13.1 17.5 440.0 0.0 -4,-5 0.9206 14 -2.0 MINOR ENSMUSG00000052889 Prkcb ENSMUST00000149583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052889 Prkcb ENSMUST00000206495 - NO_TRANSLATION retained_intron ENSMUSG00000052889 Prkcb ENSMUST00000205550 - NO_TRANSLATION retained_intron ENSMUSG00000052889 Prkcb ENSMUST00000131167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046058 Eid2 ENSMUST00000059596 ENSMUSP00000062345 TRANSLATION protein_coding - CCDS21038.1 - 236.0 0.0 0.4 2.4 0.0 0.0 -4,-2 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000040940 Arhgef1 ENSMUST00000205295 ENSMUSP00000146059 TRANSLATION protein_coding stop - 5 233.0 0.0 5.65 0.0 204.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000040940 Arhgef1 ENSMUST00000206906 ENSMUSP00000146065 TRANSLATION protein_coding stop - 5 192.0 0.0 4.73 0.0 192.7 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000040940 Arhgef1 ENSMUST00000151121 ENSMUSP00000114388 TRANSLATION protein_coding stop - 3 101.0 0.0 2.4 0.0 89.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040940 Arhgef1 ENSMUST00000132751 ENSMUSP00000117008 TRANSLATION protein_coding start - 5 616.0 0.0 9.93 0.0 125.2 0.0 1,-3 0.0039 12 -2.0 MINOR ENSMUSG00000040940 Arhgef1 ENSMUST00000206011 ENSMUSP00000145981 TRANSLATION protein_coding stop - 2 102.0 0.0 2.65 0.0 47.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040940 Arhgef1 ENSMUST00000129928 - NO_TRANSLATION retained_intron ENSMUSG00000040940 Arhgef1 ENSMUST00000117419 ENSMUSP00000113366 TRANSLATION protein_coding - CCDS52141.1 1 920.0 0.0 15.66 0.1 377.5 0.0 -4,-5 0.3272 25 8.0 ALTERNATIVE:2 ENSMUSG00000040940 Arhgef1 ENSMUST00000129383 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040940 Arhgef1 ENSMUST00000098683 ENSMUSP00000096280 TRANSLATION protein_coding - CCDS52142.1 1 979.0 0.0 15.66 0.4 377.5 0.0 -4,-5 0.6387 24 8.0 ALTERNATIVE:2 ENSMUSG00000040940 Arhgef1 ENSMUST00000206508 ENSMUSP00000146314 TRANSLATION protein_coding - CCDS85239.1 1 919.0 0.0 15.66 0.1 377.5 0.0 -4,-5 0.3272 23 8.0 ALTERNATIVE:2 ENSMUSG00000040940 Arhgef1 ENSMUST00000126484 - NO_TRANSLATION retained_intron ENSMUSG00000040940 Arhgef1 ENSMUST00000127761 - NO_TRANSLATION retained_intron ENSMUSG00000040940 Arhgef1 ENSMUST00000132786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040940 Arhgef1 ENSMUST00000047873 ENSMUSP00000046469 TRANSLATION protein_coding - CCDS52141.1 1 920.0 0.0 15.66 0.1 377.5 0.0 -4,-5 0.3272 25 8.0 ALTERNATIVE:2 ENSMUSG00000040940 Arhgef1 ENSMUST00000144714 - NO_TRANSLATION retained_intron ENSMUSG00000040940 Arhgef1 ENSMUST00000126918 - NO_TRANSLATION retained_intron ENSMUSG00000040940 Arhgef1 ENSMUST00000145783 - NO_TRANSLATION retained_intron ENSMUSG00000040940 Arhgef1 ENSMUST00000117796 ENSMUSP00000113771 TRANSLATION protein_coding - CCDS52140.1 1 976.0 0.0 15.66 0.4 377.5 0.0 -4,-5 1.0 26 8.0 PRINCIPAL:2 ENSMUSG00000040940 Arhgef1 ENSMUST00000206028 ENSMUSP00000145659 TRANSLATION protein_coding stop - 3 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003762 Coq8b ENSMUST00000108378 ENSMUSP00000104015 TRANSLATION protein_coding - CCDS39847.1 1 533.0 3.0 9.13 1.8 108.4 0.0 -4,0 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000003762 Coq8b ENSMUST00000003860 ENSMUSP00000003860 TRANSLATION protein_coding - CCDS39847.1 1 533.0 3.0 9.13 1.8 108.4 0.0 -4,0 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000003762 Coq8b ENSMUST00000123012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003762 Coq8b ENSMUST00000142910 - NO_TRANSLATION retained_intron ENSMUSG00000003762 Coq8b ENSMUST00000206312 - NO_TRANSLATION retained_intron ENSMUSG00000003762 Coq8b ENSMUST00000143372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003762 Coq8b ENSMUST00000128090 ENSMUSP00000123309 TRANSLATION nonsense_mediated_decay - - 1 304.0 1.0 4.5 0.0 99.2 0.0 -4,0 0.0061 7 -2.0 MINOR ENSMUSG00000096516 Or52a24 ENSMUST00000098193 ENSMUSP00000095795 TRANSLATION protein_coding - CCDS52338.1 5 316.0 0.0 1.0 5.4 353.7 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096516 Or52a24 ENSMUST00000218266 ENSMUSP00000151622 TRANSLATION protein_coding - CCDS52338.1 - 316.0 0.0 1.0 5.4 353.7 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000066820 Vmn2r28 ENSMUST00000233390 ENSMUSP00000156403 TRANSLATION protein_coding - - - 720.0 2.0 2.4 0.0 288.0 12.0 3,-2 0.0109 - 7.616 MINOR ENSMUSG00000066820 Vmn2r28 ENSMUST00000233239 ENSMUSP00000156457 TRANSLATION protein_coding - - - 644.0 2.0 2.0 0.0 283.0 12.0 3,-2 0.006 - 6.446 MINOR ENSMUSG00000066820 Vmn2r28 ENSMUST00000233941 ENSMUSP00000156623 TRANSLATION protein_coding - - - 505.0 4.0 2.1 0.0 272.9 17.0 3,-2 0.0099 - 8.668 MINOR ENSMUSG00000066820 Vmn2r28 ENSMUST00000232789 ENSMUSP00000156727 TRANSLATION protein_coding - - - 373.0 2.0 1.8 0.0 176.6 12.0 3,-2 0.0065 - 6.002 MINOR ENSMUSG00000066820 Vmn2r28 ENSMUST00000086297 ENSMUSP00000083477 TRANSLATION protein_coding - CCDS39748.1 5 852.0 4.0 2.7 0.1 383.3 17.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000066820 Vmn2r28 ENSMUST00000233742 ENSMUSP00000156869 TRANSLATION protein_coding - - - 776.0 4.0 2.3 0.0 378.3 17.0 3,-2 0.0772 - 14.812 MINOR ENSMUSG00000078580 E430018J23Rik ENSMUST00000074249 ENSMUSP00000073867 TRANSLATION protein_coding - - 1 149.0 0.0 0.6 0.0 53.0 0.0 -4,-7 0.0 - 1.566 MINOR ENSMUSG00000078580 E430018J23Rik ENSMUST00000106303 ENSMUSP00000101910 TRANSLATION protein_coding stop - 3 130.0 0.0 1.6 0.0 77.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000078580 E430018J23Rik ENSMUST00000165495 ENSMUSP00000126288 TRANSLATION protein_coding - CCDS52407.1 2 461.0 36.0 2.3 0.1 283.3 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000037060 Cavin3 ENSMUST00000047040 ENSMUSP00000044979 TRANSLATION protein_coding - CCDS21652.1 1 260.0 0.0 1.0 0.4 134.9 0.0 -4,-6 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000074364 Ehd2 ENSMUST00000098799 ENSMUSP00000096397 TRANSLATION protein_coding - CCDS20842.1 1 543.0 23.0 5.13 21.5 107.9 0.0 -4,-1 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000074364 Ehd2 ENSMUST00000144956 ENSMUSP00000119933 TRANSLATION protein_coding stop - 2 105.0 5.0 1.33 0.0 25.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030518 Entrep2 ENSMUST00000144535 - NO_TRANSLATION retained_intron ENSMUSG00000030518 Entrep2 ENSMUST00000148459 ENSMUSP00000116119 TRANSLATION protein_coding stop - 3 173.0 0.0 0.0 0.0 54.6 5.0 -4,-2 0.0044 - -2.0 MINOR ENSMUSG00000030518 Entrep2 ENSMUST00000133883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030518 Entrep2 ENSMUST00000119118 ENSMUSP00000113680 TRANSLATION protein_coding - CCDS21336.2 5 515.0 0.0 0.4 0.4 105.1 6.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030518 Entrep2 ENSMUST00000149851 ENSMUSP00000115095 TRANSLATION protein_coding stop - 5 214.0 0.0 0.0 0.0 35.8 2.0 0,-3 0.0084 - -2.0 MINOR ENSMUSG00000030879 Mrpl17 ENSMUST00000176887 ENSMUSP00000134784 TRANSLATION protein_coding stop - 2 111.0 0.0 1.33 0.0 44.5 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000030879 Mrpl17 ENSMUST00000033170 ENSMUSP00000147523 TRANSLATION protein_coding - - 1 116.0 0.0 1.75 0.0 44.5 0.0 -4,0 0.0 1 6.3 MINOR ENSMUSG00000030879 Mrpl17 ENSMUST00000124482 ENSMUSP00000117971 TRANSLATION protein_coding - CCDS21662.1 1 176.0 0.0 3.08 12.3 90.3 0.0 -4,0 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000030879 Mrpl17 ENSMUST00000176158 ENSMUSP00000135121 TRANSLATION nonsense_mediated_decay start - 3 109.0 0.0 1.75 0.0 44.5 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000030879 Mrpl17 ENSMUST00000176498 ENSMUSP00000148082 TRANSLATION protein_coding start - 3 122.0 0.0 2.08 0.0 45.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000054385 Ceacam2 ENSMUST00000066503 ENSMUSP00000064255 TRANSLATION protein_coding - CCDS52152.1 1 340.0 0.0 2.7 1.0 90.1 1.0 3,-1 0.0848 3 1.998 MINOR ENSMUSG00000054385 Ceacam2 ENSMUST00000145681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054385 Ceacam2 ENSMUST00000044547 ENSMUSP00000048118 TRANSLATION protein_coding - CCDS52153.1 5 520.0 0.0 4.7 2.2 190.3 1.0 3,-1 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000054385 Ceacam2 ENSMUST00000064862 ENSMUSP00000068540 TRANSLATION protein_coding - CCDS20986.1 1 272.0 0.0 2.6 0.0 90.1 1.0 3,-1 0.0313 3 1.8 MINOR ENSMUSG00000059146 Ntrk3 ENSMUST00000206500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059146 Ntrk3 ENSMUST00000205700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059146 Ntrk3 ENSMUST00000205354 ENSMUSP00000145681 TRANSLATION nonsense_mediated_decay start - 1 61.0 0.0 1.0 0.0 33.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000059146 Ntrk3 ENSMUST00000039431 ENSMUSP00000037909 TRANSLATION protein_coding - CCDS21371.1 1 825.0 20.0 14.277 21.9 551.8 2.0 2,-2 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000059146 Ntrk3 ENSMUST00000206849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059146 Ntrk3 ENSMUST00000206268 ENSMUSP00000146188 TRANSLATION protein_coding stop - 5 86.0 0.0 0.264 0.0 30.9 0.0 2,-2 0.0008 - -2.0 MINOR ENSMUSG00000059146 Ntrk3 ENSMUST00000193002 ENSMUSP00000141534 TRANSLATION protein_coding - - 5 839.0 20.0 14.277 6.9 534.4 2.0 2,-2 0.4205 10 18.084 MINOR ENSMUSG00000059146 Ntrk3 ENSMUST00000195262 ENSMUSP00000141599 TRANSLATION protein_coding - - 5 864.0 20.0 13.527 2.2 533.7 2.0 2,-2 0.1722 10 15.642 MINOR ENSMUSG00000059146 Ntrk3 ENSMUST00000206877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059146 Ntrk3 ENSMUST00000205411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059146 Ntrk3 ENSMUST00000206167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059146 Ntrk3 ENSMUST00000206091 ENSMUSP00000145958 TRANSLATION protein_coding stop - 3 82.0 0.0 0.6 0.0 30.9 0.0 2,-2 0.0008 - -2.0 MINOR ENSMUSG00000059146 Ntrk3 ENSMUST00000206599 ENSMUSP00000145774 TRANSLATION nonsense_mediated_decay start - 5 12.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0069 - -2.0 MINOR ENSMUSG00000059146 Ntrk3 ENSMUST00000205868 ENSMUSP00000145689 TRANSLATION nonsense_mediated_decay start - 5 38.0 0.0 0.0 0.0 0.0 0.0 -3,-7 0.0001 - -2.0 MINOR ENSMUSG00000059146 Ntrk3 ENSMUST00000206949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059146 Ntrk3 ENSMUST00000151885 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059146 Ntrk3 ENSMUST00000155795 - NO_TRANSLATION retained_intron ENSMUSG00000059146 Ntrk3 ENSMUST00000205312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059146 Ntrk3 ENSMUST00000039438 ENSMUSP00000038324 TRANSLATION protein_coding - CCDS21372.1 1 612.0 0.0 8.947 9.0 233.7 2.0 2,-2 0.2384 6 1.532 MINOR ENSMUSG00000059146 Ntrk3 ENSMUST00000206752 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007946 Phox2a ENSMUST00000209878 - NO_TRANSLATION retained_intron ENSMUSG00000007946 Phox2a ENSMUST00000008090 ENSMUSP00000008090 TRANSLATION protein_coding - CCDS21514.1 1 280.0 0.0 1.2 10.1 80.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059981 Taok2 ENSMUST00000117394 ENSMUSP00000112963 TRANSLATION protein_coding - CCDS52403.1 1 1240.0 23.0 11.6 5.5 213.0 0.0 -4,-5 0.6804 12 15.912 MINOR ENSMUSG00000059981 Taok2 ENSMUST00000130371 - NO_TRANSLATION retained_intron ENSMUSG00000059981 Taok2 ENSMUST00000214525 ENSMUSP00000150069 TRANSLATION protein_coding start - 5 407.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000059981 Taok2 ENSMUST00000071268 ENSMUSP00000071246 TRANSLATION protein_coding - CCDS52404.1 1 1055.0 23.0 13.6 5.7 213.0 0.0 -4,-5 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000059981 Taok2 ENSMUST00000156273 - NO_TRANSLATION retained_intron ENSMUSG00000096903 Vmn1r104 ENSMUST00000169689 ENSMUSP00000127493 TRANSLATION protein_coding - CCDS52076.1 - 307.0 0.0 0.0 0.4 56.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000000605 Clcn4 ENSMUST00000209916 ENSMUSP00000147449 TRANSLATION nonsense_mediated_decay - - 2 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000605 Clcn4 ENSMUST00000210444 - NO_TRANSLATION retained_intron ENSMUSG00000000605 Clcn4 ENSMUST00000210061 ENSMUSP00000148174 TRANSLATION protein_coding - CCDS85213.1 1 716.0 0.0 5.973 0.0 369.8 19.0 -4,-6 0.1045 4 6.038 MINOR ENSMUSG00000000605 Clcn4 ENSMUST00000210809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000605 Clcn4 ENSMUST00000210989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000605 Clcn4 ENSMUST00000211574 ENSMUSP00000148061 TRANSLATION nonsense_mediated_decay - - 1 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000605 Clcn4 ENSMUST00000210362 ENSMUSP00000147627 TRANSLATION protein_coding stop - 3 134.0 0.0 1.6 0.0 43.8 5.0 -4,-5 0.0032 - -2.0 MINOR ENSMUSG00000000605 Clcn4 ENSMUST00000000619 ENSMUSP00000000619 TRANSLATION protein_coding - CCDS20786.1 1 747.0 0.0 6.453 0.0 412.7 21.0 -4,-6 0.2137 5 6.998 ALTERNATIVE:2 ENSMUSG00000000605 Clcn4 ENSMUST00000211551 - NO_TRANSLATION retained_intron ENSMUSG00000000605 Clcn4 ENSMUST00000210594 ENSMUSP00000147562 TRANSLATION protein_coding - CCDS85212.1 5 687.0 0.0 6.953 0.0 412.7 20.0 1,-3 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000048236 Ovch2 ENSMUST00000106755 ENSMUSP00000102366 TRANSLATION protein_coding - CCDS21692.1 1 609.0 11.0 4.44 0.0 360.7 0.0 -1,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000074375 Sult2a3 ENSMUST00000098809 ENSMUSP00000096407 TRANSLATION protein_coding - CCDS57495.1 5 285.0 19.0 6.0 7.7 271.8 0.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000030538 Cib1 ENSMUST00000206084 ENSMUSP00000145961 TRANSLATION protein_coding - CCDS85324.1 3 186.0 17.0 5.08 30.0 43.9 0.0 -4,-5 0.9735 6 18.0 ALTERNATIVE:1 ENSMUSG00000030538 Cib1 ENSMUST00000065163 ENSMUSP00000070901 TRANSLATION protein_coding - CCDS21392.1 1 191.0 17.0 5.08 30.0 43.9 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:4 ENSMUSG00000030538 Cib1 ENSMUST00000206802 ENSMUSP00000145564 TRANSLATION nonsense_mediated_decay - - 3 43.0 2.0 1.066 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030538 Cib1 ENSMUST00000123279 ENSMUSP00000118926 TRANSLATION protein_coding stop - 2 113.0 14.0 3.08 0.1 43.9 0.0 -4,-6 0.0191 1 -2.0 MINOR ENSMUSG00000030538 Cib1 ENSMUST00000205996 ENSMUSP00000146153 TRANSLATION protein_coding stop - 3 87.0 8.0 2.33 0.0 24.6 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000030538 Cib1 ENSMUST00000206211 - NO_TRANSLATION retained_intron ENSMUSG00000030538 Cib1 ENSMUST00000071457 ENSMUSP00000071401 TRANSLATION protein_coding - CCDS80740.1 1 143.0 15.0 3.58 0.1 43.9 0.0 -4,-6 0.0381 3 9.668 MINOR ENSMUSG00000030538 Cib1 ENSMUST00000206618 - NO_TRANSLATION retained_intron ENSMUSG00000030538 Cib1 ENSMUST00000144295 - NO_TRANSLATION retained_intron ENSMUSG00000030538 Cib1 ENSMUST00000131402 - NO_TRANSLATION retained_intron ENSMUSG00000108348 Pnma8c ENSMUST00000206129 ENSMUSP00000148171 TRANSLATION protein_coding - - - 204.0 0.0 1.0 3.1 151.8 0.0 -4,-5 0.8091 3 13.0 PRINCIPAL:1 ENSMUSG00000093917 Vmn1r254 ENSMUST00000105187 ENSMUSP00000100822 TRANSLATION protein_coding - CCDS71908.1 - 305.0 0.0 0.0 0.4 49.4 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000049421 Zfp260 ENSMUST00000134365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049421 Zfp260 ENSMUST00000108200 ENSMUSP00000103835 TRANSLATION protein_coding - CCDS21078.1 1 407.0 48.0 1.45 8.4 290.4 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000049421 Zfp260 ENSMUST00000149302 - NO_TRANSLATION retained_intron ENSMUSG00000049421 Zfp260 ENSMUST00000130526 ENSMUSP00000122253 TRANSLATION protein_coding stop - 2 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049421 Zfp260 ENSMUST00000050735 ENSMUSP00000052200 TRANSLATION protein_coding - CCDS21078.1 1 407.0 48.0 1.45 8.4 290.4 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000049421 Zfp260 ENSMUST00000123095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049421 Zfp260 ENSMUST00000182136 - NO_TRANSLATION retained_intron ENSMUSG00000096606 Tpbgl ENSMUST00000178124 ENSMUSP00000137154 TRANSLATION protein_coding - CCDS57566.1 - 384.0 0.0 0.2 4.4 83.4 0.0 1,-3 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000066568 Lsm14a ENSMUST00000085585 ENSMUSP00000082723 TRANSLATION protein_coding - CCDS21140.1 1 462.0 0.0 2.0 7.4 224.6 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000066568 Lsm14a ENSMUST00000205519 ENSMUSP00000145883 TRANSLATION nonsense_mediated_decay start - 5 158.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000066568 Lsm14a ENSMUST00000155256 ENSMUSP00000118766 TRANSLATION protein_coding stop - 5 287.0 0.0 2.0 0.0 164.4 0.0 -4,-5 0.0138 4 -2.0 MINOR ENSMUSG00000066568 Lsm14a ENSMUST00000205455 - NO_TRANSLATION retained_intron ENSMUSG00000066568 Lsm14a ENSMUST00000206830 ENSMUSP00000145807 TRANSLATION protein_coding start - 3 124.0 0.0 0.0 0.0 51.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000066568 Lsm14a ENSMUST00000206388 ENSMUSP00000145972 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066568 Lsm14a ENSMUST00000206715 - NO_TRANSLATION retained_intron ENSMUSG00000066568 Lsm14a ENSMUST00000133046 ENSMUSP00000119461 TRANSLATION protein_coding stop - 5 175.0 0.0 1.0 0.0 52.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038745 Nlrp6 ENSMUST00000183761 - NO_TRANSLATION retained_intron ENSMUSG00000038745 Nlrp6 ENSMUST00000184560 ENSMUSP00000139170 TRANSLATION protein_coding - - 1 899.0 6.0 3.798 0.0 210.6 1.0 -4,-6 0.1924 11 13.598 ALTERNATIVE:2 ENSMUSG00000038745 Nlrp6 ENSMUST00000183845 ENSMUSP00000139357 TRANSLATION protein_coding - CCDS40178.2 1 869.0 6.0 3.798 0.0 210.6 1.0 -4,-5 0.4763 11 13.598 ALTERNATIVE:2 ENSMUSG00000038745 Nlrp6 ENSMUST00000106045 ENSMUSP00000101660 TRANSLATION protein_coding - - 5 882.0 6.0 3.998 0.0 210.6 1.0 -4,-5 0.8219 11 14.0 PRINCIPAL:2 ENSMUSG00000050866 Clrn3 ENSMUST00000053716 ENSMUSP00000056245 TRANSLATION protein_coding - CCDS21943.1 1 226.0 0.0 0.732 11.4 0.0 0.0 -1,-4 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000118661 Muc6 ENSMUST00000239500 ENSMUSP00000159382 TRANSLATION protein_coding - - - 4972.0 0.0 11.593 0.0 494.3 0.0 2,-4 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000092032 Vmn2r59 ENSMUST00000233327 ENSMUSP00000156474 TRANSLATION nonsense_mediated_decay - - - 85.0 0.0 0.2 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000092032 Vmn2r59 ENSMUST00000233351 - NO_TRANSLATION retained_intron ENSMUSG00000092032 Vmn2r59 ENSMUST00000233456 ENSMUSP00000156689 TRANSLATION protein_coding - - - 592.0 2.0 2.55 0.0 199.2 0.0 4,-1 0.0014 - 6.998 MINOR ENSMUSG00000092032 Vmn2r59 ENSMUST00000168489 ENSMUSP00000131856 TRANSLATION protein_coding - CCDS52214.1 5 865.0 4.0 3.05 0.1 409.2 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000049728 Zfp668 ENSMUST00000106261 ENSMUSP00000101868 TRANSLATION protein_coding - CCDS21881.1 1 619.0 64.0 2.0 9.1 309.9 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000049728 Zfp668 ENSMUST00000106263 ENSMUSP00000101870 TRANSLATION protein_coding - CCDS21881.1 1 619.0 64.0 2.0 9.1 309.9 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000049728 Zfp668 ENSMUST00000106262 ENSMUSP00000101869 TRANSLATION protein_coding - CCDS21881.1 1 619.0 64.0 2.0 9.1 309.9 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000049728 Zfp668 ENSMUST00000150961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049728 Zfp668 ENSMUST00000144721 ENSMUSP00000116730 TRANSLATION protein_coding stop - 3 120.0 10.0 0.4 0.0 21.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049728 Zfp668 ENSMUST00000054415 ENSMUSP00000056105 TRANSLATION protein_coding - CCDS21881.1 1 619.0 64.0 2.0 9.1 309.9 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000051051 Or6f2 ENSMUST00000215785 ENSMUSP00000149490 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 1.5 170.6 8.0 -4,-6 0.7732 - 9.0 PRINCIPAL:4 ENSMUSG00000051051 Or6f2 ENSMUST00000214272 ENSMUSP00000150614 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 1.5 170.6 8.0 -4,-6 0.7732 - 9.0 PRINCIPAL:4 ENSMUSG00000051051 Or6f2 ENSMUST00000209314 ENSMUSP00000148025 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 1.5 170.6 8.0 -4,-6 0.7732 - 9.0 PRINCIPAL:4 ENSMUSG00000051051 Or6f2 ENSMUST00000213953 ENSMUSP00000149510 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 1.5 170.6 8.0 -4,-6 0.7732 - 9.0 PRINCIPAL:4 ENSMUSG00000051051 Or6f2 ENSMUST00000055890 ENSMUSP00000052678 TRANSLATION protein_coding - CCDS21968.1 - 317.0 0.0 1.0 0.3 170.6 8.0 -4,-6 0.6468 - 8.0 ALTERNATIVE:2 ENSMUSG00000051051 Or6f2 ENSMUST00000216023 ENSMUSP00000149562 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 1.5 170.6 8.0 -4,-6 0.7732 - 9.0 PRINCIPAL:4 ENSMUSG00000003873 Bax ENSMUST00000211195 ENSMUSP00000148182 TRANSLATION protein_coding stop - 5 74.0 0.0 2.66 0.0 45.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000003873 Bax ENSMUST00000211615 - NO_TRANSLATION retained_intron ENSMUSG00000003873 Bax ENSMUST00000033093 ENSMUSP00000033093 TRANSLATION protein_coding - CCDS21246.1 1 192.0 0.0 5.66 9.5 95.8 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000003873 Bax ENSMUST00000210019 ENSMUSP00000147753 TRANSLATION protein_coding start/stop - 5 114.0 0.0 2.41 0.0 0.0 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000003873 Bax ENSMUST00000211365 ENSMUSP00000148240 TRANSLATION protein_coding - - 3 171.0 0.0 4.76 0.0 95.8 0.0 -4,-5 0.0015 8 10.2 MINOR ENSMUSG00000003873 Bax ENSMUST00000210392 ENSMUSP00000148265 TRANSLATION protein_coding stop - 2 172.0 0.0 4.83 0.0 95.8 0.0 -4,-7 0.0055 8 -2.0 MINOR ENSMUSG00000110136 Gm45785 ENSMUST00000209690 ENSMUSP00000148146 TRANSLATION protein_coding,RT - - 5 94.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.6581 - -2.0 PRINCIPAL:1 ENSMUSG00000004328 Hif3a ENSMUST00000139224 ENSMUSP00000146258 TRANSLATION protein_coding start - 3 76.0 0.0 2.0 0.0 28.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004328 Hif3a ENSMUST00000037762 ENSMUSP00000048248 TRANSLATION protein_coding - CCDS20860.1 1 662.0 0.0 6.498 3.1 139.9 0.0 -4,-5 0.7266 - 12.646 MINOR ENSMUSG00000004328 Hif3a ENSMUST00000108492 ENSMUSP00000104132 TRANSLATION protein_coding - CCDS52045.1 1 664.0 0.0 6.498 7.5 139.9 0.0 -4,0 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000004328 Hif3a ENSMUST00000153833 ENSMUSP00000117728 TRANSLATION protein_coding stop - 3 152.0 0.0 1.41 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000030862 Cpxm2 ENSMUST00000033149 ENSMUSP00000033149 TRANSLATION protein_coding - CCDS21921.1 1 764.0 6.0 8.33 0.1 403.3 0.0 4,-1 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000030862 Cpxm2 ENSMUST00000150405 - NO_TRANSLATION retained_intron ENSMUSG00000030862 Cpxm2 ENSMUST00000127039 - NO_TRANSLATION retained_intron ENSMUSG00000030862 Cpxm2 ENSMUST00000136188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030862 Cpxm2 ENSMUST00000209155 ENSMUSP00000146382 TRANSLATION protein_coding start - 3 78.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000041037 Irgq ENSMUST00000049020 ENSMUSP00000036699 TRANSLATION protein_coding - CCDS20953.1 1 583.0 7.0 0.132 0.4 0.0 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000040601 Nlrp4a ENSMUST00000146534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040601 Nlrp4a ENSMUST00000068767 ENSMUSP00000066841 TRANSLATION protein_coding - CCDS21003.1 1 982.0 7.0 7.6 0.4 259.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000040601 Nlrp4a ENSMUST00000146907 ENSMUSP00000146044 TRANSLATION protein_coding - - 1 952.0 7.0 6.8 0.0 259.5 0.0 -4,-5 0.1327 - 16.398 MINOR ENSMUSG00000040601 Nlrp4a ENSMUST00000119386 ENSMUSP00000112441 TRANSLATION protein_coding - CCDS21003.1 1 982.0 7.0 7.6 0.4 259.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000052512 Nav2 ENSMUST00000184809 - NO_TRANSLATION retained_intron ENSMUSG00000052512 Nav2 ENSMUST00000184155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052512 Nav2 ENSMUST00000184109 ENSMUSP00000138846 TRANSLATION protein_coding start/stop - 3 296.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0014 7 -2.0 MINOR ENSMUSG00000052512 Nav2 ENSMUST00000064383 - NO_TRANSLATION retained_intron ENSMUSG00000052512 Nav2 ENSMUST00000183715 - NO_TRANSLATION retained_intron ENSMUSG00000052512 Nav2 ENSMUST00000183659 ENSMUSP00000139309 TRANSLATION protein_coding - CCDS71972.1 5 2371.0 0.0 3.53 0.0 57.2 0.0 -4,-6 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000052512 Nav2 ENSMUST00000184102 - NO_TRANSLATION retained_intron ENSMUSG00000052512 Nav2 ENSMUST00000184955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052512 Nav2 ENSMUST00000184544 - NO_TRANSLATION retained_intron ENSMUSG00000052512 Nav2 ENSMUST00000184928 - NO_TRANSLATION retained_intron ENSMUSG00000052512 Nav2 ENSMUST00000184124 ENSMUSP00000139312 TRANSLATION nonsense_mediated_decay - - 1 103.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000052512 Nav2 ENSMUST00000184462 - NO_TRANSLATION retained_intron ENSMUSG00000052512 Nav2 ENSMUST00000183531 - NO_TRANSLATION retained_intron ENSMUSG00000052512 Nav2 ENSMUST00000184945 ENSMUSP00000139045 TRANSLATION protein_coding - CCDS71973.1 5 2432.0 0.0 2.78 0.0 54.4 0.0 -4,-7 0.3205 19 10.206 MINOR ENSMUSG00000052512 Nav2 ENSMUST00000207743 ENSMUSP00000159080 TRANSLATION protein_coding stop - 3 116.0 0.0 2.58 0.0 51.2 0.0 -4,-6 0.0025 1 -2.0 MINOR ENSMUSG00000052512 Nav2 ENSMUST00000184471 - NO_TRANSLATION retained_intron ENSMUSG00000052512 Nav2 ENSMUST00000184336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058145 Adamts17 ENSMUST00000147880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058145 Adamts17 ENSMUST00000148538 - NO_TRANSLATION retained_intron ENSMUSG00000058145 Adamts17 ENSMUST00000156396 - NO_TRANSLATION retained_intron ENSMUSG00000058145 Adamts17 ENSMUST00000154103 ENSMUSP00000121836 TRANSLATION protein_coding start/stop - 3 234.0 0.0 1.855 0.0 99.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058145 Adamts17 ENSMUST00000098382 ENSMUSP00000095984 TRANSLATION protein_coding - CCDS21349.2 5 1122.0 16.0 7.03 0.4 340.0 0.0 2,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000058145 Adamts17 ENSMUST00000107478 ENSMUSP00000103102 TRANSLATION protein_coding - - 5 1095.0 16.0 6.94 0.0 292.4 0.0 2,-3 0.2243 - 14.964 MINOR ENSMUSG00000058145 Adamts17 ENSMUST00000125014 ENSMUSP00000147080 TRANSLATION protein_coding start - 3 77.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058145 Adamts17 ENSMUST00000138009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101520 Scgb1b12 ENSMUST00000188355 ENSMUSP00000139594 TRANSLATION protein_coding - CCDS80698.1 3 93.0 0.0 1.48 0.9 73.8 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078765 U2af1l4 ENSMUST00000168555 ENSMUSP00000131654 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000163276 ENSMUSP00000127233 TRANSLATION nonsense_mediated_decay - - 5 37.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000168229 ENSMUSP00000132915 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000165009 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000169283 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000166257 ENSMUSP00000125838 TRANSLATION protein_coding - - 5 181.0 8.0 5.07 2.1 89.8 0.0 -4,-5 0.1511 1 16.401 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000171850 ENSMUSP00000131781 TRANSLATION protein_coding - - 5 187.0 8.0 4.945 0.1 57.6 0.0 -4,-5 0.0279 1 13.524 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000166864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078765 U2af1l4 ENSMUST00000169071 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000165722 ENSMUSP00000125790 TRANSLATION nonsense_mediated_decay start - 5 53.0 4.0 1.68 0.0 31.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000167202 ENSMUSP00000146344 TRANSLATION protein_coding stop - 3 120.0 3.0 2.945 0.0 0.0 0.0 -4,-2 0.0001 - -2.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000164438 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000163464 ENSMUSP00000125959 TRANSLATION protein_coding - - 5 216.0 6.0 6.105 8.0 60.8 0.0 -4,-5 0.6408 1 17.562 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000166510 ENSMUSP00000132316 TRANSLATION protein_coding - - 5 210.0 8.0 5.775 0.0 88.6 0.0 -4,-5 0.0535 1 17.262 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000171364 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000163654 ENSMUSP00000131048 TRANSLATION protein_coding - - 2 188.0 5.0 5.105 2.0 60.8 0.0 -4,-5 0.0451 1 12.243 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000170453 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000163848 ENSMUSP00000132536 TRANSLATION nonsense_mediated_decay - - 5 37.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000169911 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000165543 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000168931 ENSMUSP00000129697 TRANSLATION protein_coding stop - 3 119.0 3.0 3.775 0.0 32.4 0.0 -4,-2 0.0001 - -2.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000167501 ENSMUSP00000129102 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000166960 ENSMUSP00000146831 TRANSLATION protein_coding - - 3 90.0 1.0 1.83 0.0 23.2 0.0 -4,-5 0.0 1 2.298 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000164365 ENSMUSP00000131193 TRANSLATION nonsense_mediated_decay start - 5 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000168333 ENSMUSP00000128950 TRANSLATION nonsense_mediated_decay - - 5 102.0 4.0 2.945 0.0 31.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000043273 ENSMUSP00000039406 TRANSLATION protein_coding - CCDS21100.1 1 220.0 8.0 6.105 8.0 88.6 0.0 -4,-5 1.0 1 20.922 PRINCIPAL:1 ENSMUSG00000078765 U2af1l4 ENSMUST00000169962 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000167361 ENSMUSP00000146834 TRANSLATION protein_coding - - 2 122.0 4.0 2.83 0.1 51.0 0.0 -4,-5 0.0013 1 6.408 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000168222 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000163482 ENSMUSP00000130649 TRANSLATION protein_coding - - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000078765 U2af1l4 ENSMUST00000165524 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000165773 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000167024 - NO_TRANSLATION retained_intron ENSMUSG00000078765 U2af1l4 ENSMUST00000163330 ENSMUSP00000129385 TRANSLATION protein_coding stop - 3 105.0 4.0 2.83 0.0 51.0 0.0 -4,-5 0.0013 1 -2.0 MINOR ENSMUSG00000030745 Il21r ENSMUST00000033000 ENSMUSP00000033000 TRANSLATION protein_coding - CCDS21823.1 1 529.0 0.0 4.75 0.4 0.0 0.0 4,-1 0.5382 - 6.0 ALTERNATIVE:2 ENSMUSG00000030745 Il21r ENSMUST00000206234 ENSMUSP00000145772 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 0.0 0.0 0.0 0.0 1,-4 0.0491 - -2.0 MINOR ENSMUSG00000030745 Il21r ENSMUST00000206103 ENSMUSP00000145966 TRANSLATION protein_coding - - 1 268.0 0.0 4.75 0.0 0.0 0.0 4,-1 0.7391 - 6.0 PRINCIPAL:4 ENSMUSG00000040660 Cyp2b9 ENSMUST00000082214 ENSMUSP00000080846 TRANSLATION protein_coding - CCDS21001.1 1 491.0 52.0 8.6 2.6 488.5 0.0 3,-2 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000030861 Acadsb ENSMUST00000136612 - NO_TRANSLATION retained_intron ENSMUSG00000030861 Acadsb ENSMUST00000135633 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030861 Acadsb ENSMUST00000015829 ENSMUSP00000015829 TRANSLATION protein_coding - CCDS21916.1 1 432.0 29.0 9.35 9.6 357.1 0.0 -4,0 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000030861 Acadsb ENSMUST00000133277 ENSMUSP00000146461 TRANSLATION protein_coding start - 2 163.0 0.0 2.6 0.0 99.2 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000030861 Acadsb ENSMUST00000156261 - NO_TRANSLATION retained_intron ENSMUSG00000030861 Acadsb ENSMUST00000117518 ENSMUSP00000113948 TRANSLATION protein_coding - - 1 465.0 27.0 8.6 0.0 328.0 0.0 -4,0 0.0032 17 13.422 MINOR ENSMUSG00000030861 Acadsb ENSMUST00000151995 - NO_TRANSLATION retained_intron ENSMUSG00000030541 Idh2 ENSMUST00000134328 ENSMUSP00000118184 TRANSLATION nonsense_mediated_decay - - 1 294.0 12.0 4.66 0.0 85.9 0.0 -4,0 0.0004 13 -2.0 MINOR ENSMUSG00000030541 Idh2 ENSMUST00000125542 ENSMUSP00000145852 TRANSLATION nonsense_mediated_decay start - 3 150.0 12.0 3.33 0.0 61.2 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000030541 Idh2 ENSMUST00000107384 ENSMUSP00000103007 TRANSLATION protein_coding - CCDS39994.1 1 452.0 34.0 10.99 22.9 256.5 0.0 -4,0 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000030541 Idh2 ENSMUST00000139178 - NO_TRANSLATION retained_intron ENSMUSG00000030541 Idh2 ENSMUST00000206714 ENSMUSP00000146084 TRANSLATION protein_coding - - 3 90.0 0.0 1.66 0.0 0.0 0.0 -4,0 0.0 4 0.0 MINOR ENSMUSG00000030541 Idh2 ENSMUST00000134070 - NO_TRANSLATION retained_intron ENSMUSG00000030541 Idh2 ENSMUST00000156761 - NO_TRANSLATION retained_intron ENSMUSG00000012848 Rps5 ENSMUST00000139349 - NO_TRANSLATION retained_intron ENSMUSG00000012848 Rps5 ENSMUST00000004554 ENSMUSP00000004554 TRANSLATION protein_coding - CCDS20817.1 1 204.0 0.0 4.83 25.4 127.2 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000012848 Rps5 ENSMUST00000147435 ENSMUSP00000118798 TRANSLATION protein_coding stop - 5 182.0 0.0 4.0 0.0 99.3 0.0 -4,-5 0.0003 6 -2.0 MINOR ENSMUSG00000012848 Rps5 ENSMUST00000137329 ENSMUSP00000121961 TRANSLATION protein_coding stop - 5 189.0 0.0 4.33 0.0 104.7 0.0 -4,-5 0.0003 6 -2.0 MINOR ENSMUSG00000012848 Rps5 ENSMUST00000108539 ENSMUSP00000104179 TRANSLATION protein_coding - CCDS20817.1 2 204.0 0.0 4.83 25.4 127.2 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000012848 Rps5 ENSMUST00000131795 - NO_TRANSLATION retained_intron ENSMUSG00000019158 Tmem160 ENSMUST00000209536 ENSMUSP00000147418 TRANSLATION nonsense_mediated_decay - - 2 70.0 0.0 0.5 0.0 0.0 0.0 -4,0 0.0118 1 -2.0 MINOR ENSMUSG00000019158 Tmem160 ENSMUST00000019302 ENSMUSP00000019302 TRANSLATION protein_coding - CCDS20849.1 1 188.0 0.0 2.5 8.0 0.0 0.0 -4,0 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000062444 Ap3b2 ENSMUST00000082090 ENSMUSP00000080739 TRANSLATION protein_coding - CCDS21403.1 1 1082.0 0.0 7.073 5.4 759.8 0.0 -4,-5 1.0 30 14.0 PRINCIPAL:1 ENSMUSG00000062444 Ap3b2 ENSMUST00000238438 ENSMUSP00000158658 TRANSLATION protein_coding - - - 1101.0 0.0 7.073 2.1 759.8 0.0 -4,-5 0.4688 29 12.5 MINOR ENSMUSG00000062444 Ap3b2 ENSMUST00000208911 - NO_TRANSLATION retained_intron ENSMUSG00000062444 Ap3b2 ENSMUST00000152355 - NO_TRANSLATION retained_intron ENSMUSG00000062444 Ap3b2 ENSMUST00000119121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062444 Ap3b2 ENSMUST00000238692 ENSMUSP00000158645 TRANSLATION protein_coding stop - - 199.0 0.0 3.5 0.0 151.0 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000062444 Ap3b2 ENSMUST00000238711 ENSMUSP00000158678 TRANSLATION protein_coding - - - 1050.0 0.0 6.073 2.1 643.4 0.0 -4,-5 0.176 29 4.502 MINOR ENSMUSG00000062444 Ap3b2 ENSMUST00000147624 - NO_TRANSLATION retained_intron ENSMUSG00000062444 Ap3b2 ENSMUST00000125634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030693 Klk10 ENSMUST00000014058 ENSMUSP00000014058 TRANSLATION protein_coding - CCDS39936.1 1 278.0 6.0 2.9 6.9 201.5 0.0 1,-2 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000072244 Trim6 ENSMUST00000214578 ENSMUSP00000149805 TRANSLATION protein_coding - - 5 462.0 11.0 5.474 0.0 111.9 0.0 -4,-5 0.0119 - 13.092 MINOR ENSMUSG00000072244 Trim6 ENSMUST00000098180 ENSMUSP00000095782 TRANSLATION protein_coding - CCDS40065.1 1 488.0 13.0 6.074 10.3 151.5 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000072244 Trim6 ENSMUST00000144538 - NO_TRANSLATION retained_intron ENSMUSG00000072244 Trim6 ENSMUST00000153324 ENSMUSP00000119932 TRANSLATION protein_coding stop - 3 148.0 13.0 2.864 0.0 84.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000072244 Trim6 ENSMUST00000144455 ENSMUSP00000116233 TRANSLATION protein_coding stop - 3 113.0 10.0 1.6 0.0 44.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000072244 Trim6 ENSMUST00000128493 ENSMUSP00000118859 TRANSLATION protein_coding stop - 3 125.0 12.0 2.1 0.0 75.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000109396 Gm4565 ENSMUST00000208134 ENSMUSP00000147120 TRANSLATION protein_coding - CCDS85232.1 1 301.0 17.0 1.0 0.0 238.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030591 Psmd8 ENSMUST00000208461 - NO_TRANSLATION retained_intron ENSMUSG00000030591 Psmd8 ENSMUST00000209034 ENSMUSP00000146882 TRANSLATION protein_coding - - 2 253.0 0.0 5.75 0.0 112.1 0.0 -4,-7 0.0021 5 9.21 MINOR ENSMUSG00000030591 Psmd8 ENSMUST00000182328 ENSMUSP00000138613 TRANSLATION protein_coding - - 1 289.0 0.0 6.75 1.1 125.3 0.0 -4,-7 0.1936 6 12.042 MINOR ENSMUSG00000030591 Psmd8 ENSMUST00000186182 ENSMUSP00000139514 TRANSLATION protein_coding - CCDS52169.1 1 353.0 0.0 6.75 8.1 125.3 0.0 -4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000030591 Psmd8 ENSMUST00000208592 - NO_TRANSLATION retained_intron ENSMUSG00000030591 Psmd8 ENSMUST00000207087 - NO_TRANSLATION retained_intron ENSMUSG00000030591 Psmd8 ENSMUST00000059642 ENSMUSP00000051657 TRANSLATION protein_coding - CCDS52169.1 1 353.0 0.0 6.75 8.1 125.3 0.0 -4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000043456 Zfp536 ENSMUST00000176137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043456 Zfp536 ENSMUST00000206332 - NO_TRANSLATION retained_intron ENSMUSG00000043456 Zfp536 ENSMUST00000176205 ENSMUSP00000135068 TRANSLATION protein_coding - CCDS21156.1 1 1302.0 31.0 2.192 6.5 271.3 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000043456 Zfp536 ENSMUST00000176534 ENSMUSP00000135454 TRANSLATION protein_coding stop - 3 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043456 Zfp536 ENSMUST00000175941 ENSMUSP00000134778 TRANSLATION protein_coding - CCDS21156.1 1 1302.0 31.0 2.192 6.5 271.3 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000043456 Zfp536 ENSMUST00000176680 ENSMUSP00000135218 TRANSLATION protein_coding stop - 2 163.0 5.0 1.1 0.0 18.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043456 Zfp536 ENSMUST00000056338 ENSMUSP00000058468 TRANSLATION protein_coding - CCDS21156.1 1 1302.0 31.0 2.192 6.5 271.3 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000043456 Zfp536 ENSMUST00000176129 ENSMUSP00000135234 TRANSLATION protein_coding start - 1 281.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 2 -2.0 MINOR ENSMUSG00000043456 Zfp536 ENSMUST00000176114 ENSMUSP00000135681 TRANSLATION protein_coding - CCDS21156.1 1 1302.0 31.0 2.192 6.5 271.3 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000043456 Zfp536 ENSMUST00000206763 ENSMUSP00000159087 TRANSLATION protein_coding start - - 847.0 11.0 0.96 0.0 218.4 0.0 -4,-5 0.006 5 -2.0 MINOR ENSMUSG00000043456 Zfp536 ENSMUST00000176297 - NO_TRANSLATION retained_intron ENSMUSG00000060888 Or51f1 ENSMUST00000209952 ENSMUSP00000148058 TRANSLATION protein_coding - - 3 319.0 0.0 1.0 7.4 368.0 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060888 Or51f1 ENSMUST00000213481 ENSMUSP00000148998 TRANSLATION protein_coding - - 3 319.0 0.0 1.0 7.4 368.0 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000045114 Prrt2 ENSMUST00000161931 ENSMUSP00000143833 TRANSLATION nonsense_mediated_decay start - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000045114 Prrt2 ENSMUST00000160767 - NO_TRANSLATION retained_intron ENSMUSG00000045114 Prrt2 ENSMUST00000201963 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045114 Prrt2 ENSMUST00000201686 ENSMUSP00000144451 TRANSLATION protein_coding start/stop - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045114 Prrt2 ENSMUST00000159916 ENSMUSP00000124520 TRANSLATION protein_coding - CCDS52405.1 5 346.0 0.0 0.0 4.7 82.7 2.0 -4,-5 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000045114 Prrt2 ENSMUST00000202936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045114 Prrt2 ENSMUST00000202045 ENSMUSP00000144042 TRANSLATION protein_coding - - 5 61.0 0.0 0.0 0.0 63.8 1.0 -4,-7 0.0006 1 4.626 MINOR ENSMUSG00000050440 Hamp ENSMUST00000062620 ENSMUSP00000055404 TRANSLATION protein_coding - CCDS39895.1 1 83.0 0.0 1.0 5.4 71.5 0.0 3,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000095976 Gm5891 ENSMUST00000186212 ENSMUSP00000140803 TRANSLATION protein_coding - CCDS39816.1 1 313.0 17.0 1.0 0.0 236.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095976 Gm5891 ENSMUST00000179493 ENSMUSP00000137391 TRANSLATION protein_coding - CCDS39816.1 - 313.0 17.0 1.0 0.0 236.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000025475 Adgra1 ENSMUST00000137584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025475 Adgra1 ENSMUST00000129454 - NO_TRANSLATION retained_intron ENSMUSG00000025475 Adgra1 ENSMUST00000026548 ENSMUSP00000026548 TRANSLATION protein_coding - CCDS40171.1 1 578.0 0.0 0.165 0.1 51.4 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000060034 Ctf2 ENSMUST00000206038 ENSMUSP00000145867 TRANSLATION protein_coding - - 1 164.0 0.0 1.5 0.0 44.4 0.0 -4,-6 0.0209 - 9.678 MINOR ENSMUSG00000060034 Ctf2 ENSMUST00000076091 ENSMUSP00000075459 TRANSLATION protein_coding - CCDS21876.1 1 204.0 0.0 2.3 0.0 46.2 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047794 Or52l1 ENSMUST00000051355 ENSMUSP00000061561 TRANSLATION protein_coding - CCDS21644.1 - 316.0 0.0 1.0 11.3 356.6 11.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047794 Or52l1 ENSMUST00000214712 ENSMUSP00000151191 TRANSLATION protein_coding - - 5 331.0 0.0 1.0 5.3 356.6 11.0 -2,-5 0.5764 - 13.251 MINOR ENSMUSG00000047794 Or52l1 ENSMUST00000209409 ENSMUSP00000147369 TRANSLATION protein_coding - - 5 331.0 0.0 1.0 5.3 356.6 11.0 -2,-5 0.5764 - 13.251 MINOR ENSMUSG00000047794 Or52l1 ENSMUST00000217432 ENSMUSP00000148994 TRANSLATION protein_coding - - 5 331.0 0.0 1.0 5.3 356.6 11.0 -2,-5 0.5764 - 13.251 MINOR ENSMUSG00000109129 Gm44973 ENSMUST00000207050 ENSMUSP00000147233 TRANSLATION protein_coding,RT - - 3 189.0 12.0 0.8 0.0 56.9 0.0 -4,-5 0.771 - -2.0 PRINCIPAL:1 ENSMUSG00000030718 Ppme1 ENSMUST00000207092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030718 Ppme1 ENSMUST00000208168 - NO_TRANSLATION retained_intron ENSMUSG00000030718 Ppme1 ENSMUST00000032963 ENSMUSP00000032963 TRANSLATION protein_coding - CCDS40036.1 1 386.0 4.0 9.6 23.7 94.9 0.0 -4,-7 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000030718 Ppme1 ENSMUST00000207634 ENSMUSP00000146716 TRANSLATION protein_coding start - 5 182.0 2.0 2.85 0.0 0.0 0.0 -2,-4 0.0 5 -2.0 MINOR ENSMUSG00000030718 Ppme1 ENSMUST00000207622 - NO_TRANSLATION retained_intron ENSMUSG00000040841 Six5 ENSMUST00000049454 ENSMUSP00000045973 TRANSLATION protein_coding - CCDS20889.1 1 719.0 0.0 0.8 0.1 185.6 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000030695 Aldoa ENSMUST00000032934 ENSMUSP00000032934 TRANSLATION protein_coding - CCDS21845.1 1 364.0 17.0 8.83 36.9 627.3 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000030695 Aldoa ENSMUST00000141355 ENSMUSP00000117349 TRANSLATION protein_coding stop - 5 180.0 8.0 4.25 0.0 292.9 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000030695 Aldoa ENSMUST00000106348 ENSMUSP00000101955 TRANSLATION protein_coding - CCDS21845.1 1 364.0 17.0 8.83 36.9 627.3 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000030695 Aldoa ENSMUST00000135707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030695 Aldoa ENSMUST00000205890 ENSMUSP00000146060 TRANSLATION protein_coding stop - 5 190.0 9.0 4.58 0.0 317.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000030695 Aldoa ENSMUST00000139657 - NO_TRANSLATION retained_intron ENSMUSG00000030695 Aldoa ENSMUST00000143509 - NO_TRANSLATION retained_intron ENSMUSG00000030695 Aldoa ENSMUST00000205336 ENSMUSP00000146116 TRANSLATION protein_coding stop - 5 209.0 8.0 3.5 0.0 241.3 0.0 -1,1 0.0 2 -2.0 MINOR ENSMUSG00000030695 Aldoa ENSMUST00000133514 ENSMUSP00000114587 TRANSLATION protein_coding stop - 3 193.0 6.0 3.0 0.0 201.6 0.0 -1,1 0.0 2 -2.0 MINOR ENSMUSG00000030695 Aldoa ENSMUST00000087566 ENSMUSP00000084846 TRANSLATION protein_coding - CCDS52399.1 5 418.0 17.0 8.83 8.5 627.3 0.0 -1,1 0.4129 6 18.836 MINOR ENSMUSG00000030695 Aldoa ENSMUST00000147748 - NO_TRANSLATION retained_intron ENSMUSG00000030695 Aldoa ENSMUST00000151137 ENSMUSP00000118417 TRANSLATION protein_coding stop - 2 236.0 10.0 5.83 0.0 414.7 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000042759 Apobr ENSMUST00000137646 ENSMUSP00000145620 TRANSLATION protein_coding - - 2 130.0 0.0 0.5 0.0 0.0 0.0 -4,0 0.0235 - 1.998 MINOR ENSMUSG00000042759 Apobr ENSMUST00000138558 ENSMUSP00000146092 TRANSLATION protein_coding start - 3 164.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0157 - -2.0 MINOR ENSMUSG00000042759 Apobr ENSMUST00000039522 ENSMUSP00000042028 TRANSLATION protein_coding - CCDS21834.1 1 942.0 0.0 1.5 0.0 0.0 0.0 -4,-7 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000042759 Apobr ENSMUST00000131860 ENSMUSP00000145626 TRANSLATION nonsense_mediated_decay - - 3 59.0 0.0 1.5 0.0 0.0 0.0 -4,-7 0.0801 - -2.0 MINOR ENSMUSG00000042759 Apobr ENSMUST00000144173 ENSMUSP00000145535 TRANSLATION protein_coding start - 2 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0142 - -2.0 MINOR ENSMUSG00000040866 Rsph6a ENSMUST00000144991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040866 Rsph6a ENSMUST00000076887 ENSMUSP00000076153 TRANSLATION protein_coding - CCDS52052.1 1 453.0 0.0 1.032 0.0 241.3 0.0 -4,-6 0.02 5 4.578 MINOR ENSMUSG00000040866 Rsph6a ENSMUST00000035521 ENSMUSP00000046526 TRANSLATION protein_coding - CCDS20887.1 1 708.0 0.0 1.352 0.0 658.1 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000030876 Mettl9 ENSMUST00000207332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030876 Mettl9 ENSMUST00000033163 ENSMUSP00000033163 TRANSLATION protein_coding - CCDS21800.1 1 318.0 18.0 0.72 12.8 461.8 0.0 1,0 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000030876 Mettl9 ENSMUST00000207351 ENSMUSP00000147071 TRANSLATION protein_coding stop - 5 168.0 18.0 0.72 0.0 287.5 0.0 -4,-1 0.0259 5 -2.0 MINOR ENSMUSG00000030876 Mettl9 ENSMUST00000207835 - NO_TRANSLATION retained_intron ENSMUSG00000049791 Fzd4 ENSMUST00000058755 ENSMUSP00000049852 TRANSLATION protein_coding - CCDS21441.1 1 537.0 0.0 1.4 9.8 521.9 0.0 1,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000030654 Arl6ip1 ENSMUST00000032888 ENSMUSP00000032888 TRANSLATION protein_coding - CCDS21769.1 1 203.0 0.0 5.25 34.9 0.0 0.0 -4,-6 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000030654 Arl6ip1 ENSMUST00000205182 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030654 Arl6ip1 ENSMUST00000206536 - NO_TRANSLATION retained_intron ENSMUSG00000030654 Arl6ip1 ENSMUST00000204005 ENSMUSP00000145418 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0081 - -2.0 MINOR ENSMUSG00000030654 Arl6ip1 ENSMUST00000203154 ENSMUSP00000144894 TRANSLATION nonsense_mediated_decay - - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0081 - -2.0 MINOR ENSMUSG00000030654 Arl6ip1 ENSMUST00000206491 ENSMUSP00000146175 TRANSLATION protein_coding stop - 3 111.0 0.0 2.5 0.0 0.0 0.0 -4,-7 0.0059 1 -2.0 MINOR ENSMUSG00000094098 Vmn2r44 ENSMUST00000232847 - NO_TRANSLATION retained_intron ENSMUSG00000094098 Vmn2r44 ENSMUST00000166499 ENSMUSP00000132467 TRANSLATION protein_coding - CCDS57485.1 5 861.0 4.0 2.25 0.1 393.6 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000058447 Gm26920 ENSMUST00000182746 ENSMUSP00000138567 TRANSLATION nonsense_mediated_decay,RT - - 2 56.0 0.0 1.0 0.0 83.7 0.0 -4,-5 0.7741 - -2.0 PRINCIPAL:1 ENSMUSG00000030724 Cd19 ENSMUST00000205848 - NO_TRANSLATION retained_intron ENSMUSG00000030724 Cd19 ENSMUST00000206325 ENSMUSP00000145803 TRANSLATION protein_coding - CCDS21828.1 1 547.0 0.0 0.95 0.4 0.0 0.0 3,-2 1.0 3 6.0 PRINCIPAL:2 ENSMUSG00000030724 Cd19 ENSMUST00000032968 ENSMUSP00000032968 TRANSLATION protein_coding - - 1 546.0 0.0 0.95 0.4 0.0 0.0 3,-2 0.7389 3 6.0 ALTERNATIVE:2 ENSMUSG00000030724 Cd19 ENSMUST00000205997 - NO_TRANSLATION retained_intron ENSMUSG00000030724 Cd19 ENSMUST00000206871 - NO_TRANSLATION retained_intron ENSMUSG00000000216 Scnn1g ENSMUST00000000221 ENSMUSP00000000221 TRANSLATION protein_coding - CCDS21803.1 1 655.0 0.0 8.25 7.6 351.9 0.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000043066 Vmn1r66 ENSMUST00000228622 ENSMUSP00000153860 TRANSLATION protein_coding - CCDS20790.1 - 310.0 0.0 0.0 0.0 92.5 6.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043066 Vmn1r66 ENSMUST00000226202 - NO_TRANSLATION retained_intron ENSMUSG00000043066 Vmn1r66 ENSMUST00000060374 ENSMUSP00000055861 TRANSLATION protein_coding - CCDS20790.1 - 310.0 0.0 0.0 0.0 92.5 6.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043066 Vmn1r66 ENSMUST00000227719 ENSMUSP00000154063 TRANSLATION protein_coding - CCDS20790.1 - 310.0 0.0 0.0 0.0 92.5 6.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043066 Vmn1r66 ENSMUST00000228086 ENSMUSP00000153825 TRANSLATION protein_coding - CCDS20790.1 - 310.0 0.0 0.0 0.0 92.5 6.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074406 Zfp628 ENSMUST00000116354 ENSMUSP00000112058 TRANSLATION protein_coding - CCDS51979.1 1 1038.0 64.0 0.32 0.1 281.5 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000047545 Or52ae9 ENSMUST00000216300 ENSMUSP00000149272 TRANSLATION protein_coding - CCDS21588.1 5 314.0 0.0 1.0 13.7 342.8 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047545 Or52ae9 ENSMUST00000051346 ENSMUSP00000052662 TRANSLATION protein_coding - CCDS21588.1 - 314.0 0.0 1.0 13.7 342.8 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047545 Or52ae9 ENSMUST00000213906 ENSMUSP00000150688 TRANSLATION protein_coding - CCDS21588.1 5 314.0 0.0 1.0 13.7 342.8 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040231 Syngr4 ENSMUST00000120299 ENSMUSP00000113955 TRANSLATION protein_coding - CCDS71968.1 1 136.0 0.0 0.6 0.7 38.6 3.0 -4,-6 0.0232 - 4.644 MINOR ENSMUSG00000040231 Syngr4 ENSMUST00000039049 ENSMUSP00000047035 TRANSLATION protein_coding - CCDS39962.1 1 233.0 0.0 1.9 9.3 84.2 4.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000040231 Syngr4 ENSMUST00000211254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000115267 Vmn1r76 ENSMUST00000226300 ENSMUSP00000154198 TRANSLATION protein_coding - - - 289.0 0.0 0.0 0.0 102.6 10.0 -2,-5 0.7405 - 2.0 PRINCIPAL:2 ENSMUSG00000115267 Vmn1r76 ENSMUST00000226947 ENSMUSP00000154710 TRANSLATION protein_coding - - - 289.0 0.0 0.0 0.0 102.6 10.0 -2,-5 0.7405 - 2.0 PRINCIPAL:2 ENSMUSG00000115267 Vmn1r76 ENSMUST00000058772 ENSMUSP00000055518 TRANSLATION protein_coding - CCDS20803.1 - 324.0 0.0 0.0 0.3 102.6 10.0 -4,-5 0.2892 - 2.0 ALTERNATIVE:2 ENSMUSG00000052187 Hbb-y ENSMUST00000033229 ENSMUSP00000033229 TRANSLATION protein_coding - CCDS21593.1 1 147.0 20.0 3.0 33.9 109.2 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000044814 Or55b3 ENSMUST00000219647 ENSMUSP00000151487 TRANSLATION protein_coding - CCDS21531.1 5 336.0 0.0 1.0 4.6 234.3 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044814 Or55b3 ENSMUST00000061482 ENSMUSP00000051348 TRANSLATION protein_coding - CCDS21531.1 - 336.0 0.0 1.0 4.6 234.3 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030407 Qpctl ENSMUST00000205979 - NO_TRANSLATION retained_intron ENSMUSG00000030407 Qpctl ENSMUST00000032566 ENSMUSP00000032566 TRANSLATION protein_coding - CCDS20891.1 1 383.0 10.0 6.0 7.9 162.1 0.0 -4,-2 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000074358 Ccdc61 ENSMUST00000206499 ENSMUSP00000146309 TRANSLATION protein_coding start - 3 264.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0288 2 -2.0 MINOR ENSMUSG00000074358 Ccdc61 ENSMUST00000098780 ENSMUSP00000096377 TRANSLATION protein_coding - CCDS39791.1 1 511.0 0.0 3.4275 4.9 0.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000074358 Ccdc61 ENSMUST00000150065 ENSMUSP00000122950 TRANSLATION protein_coding stop - 3 181.0 0.0 3.4275 0.0 0.0 0.0 -4,-5 0.0314 - -2.0 MINOR ENSMUSG00000074358 Ccdc61 ENSMUST00000133506 ENSMUSP00000123152 TRANSLATION nonsense_mediated_decay start - 3 66.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0088 - -2.0 MINOR ENSMUSG00000074358 Ccdc61 ENSMUST00000139077 ENSMUSP00000123625 TRANSLATION protein_coding stop - 3 105.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000074358 Ccdc61 ENSMUST00000206595 - NO_TRANSLATION retained_intron ENSMUSG00000074358 Ccdc61 ENSMUST00000206037 - NO_TRANSLATION retained_intron ENSMUSG00000074358 Ccdc61 ENSMUST00000135467 ENSMUSP00000118644 TRANSLATION nonsense_mediated_decay - - 1 144.0 0.0 2.5975 0.0 0.0 0.0 -4,-5 0.0033 - -2.0 MINOR ENSMUSG00000030805 Stx4a ENSMUST00000138399 - NO_TRANSLATION retained_intron ENSMUSG00000030805 Stx4a ENSMUST00000142849 - NO_TRANSLATION retained_intron ENSMUSG00000030805 Stx4a ENSMUST00000156537 ENSMUSP00000118034 TRANSLATION nonsense_mediated_decay - - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030805 Stx4a ENSMUST00000121705 ENSMUSP00000112927 TRANSLATION protein_coding - CCDS21880.1 1 298.0 0.0 5.61 10.9 203.6 1.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000030805 Stx4a ENSMUST00000152310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030805 Stx4a ENSMUST00000125861 - NO_TRANSLATION retained_intron ENSMUSG00000030805 Stx4a ENSMUST00000138294 - NO_TRANSLATION retained_intron ENSMUSG00000030805 Stx4a ENSMUST00000123180 - NO_TRANSLATION retained_intron ENSMUSG00000030805 Stx4a ENSMUST00000033075 ENSMUSP00000033075 TRANSLATION protein_coding - CCDS21880.1 1 298.0 0.0 5.61 10.9 203.6 1.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000038502 Ptov1 ENSMUST00000208655 - NO_TRANSLATION retained_intron ENSMUSG00000038502 Ptov1 ENSMUST00000207393 - NO_TRANSLATION retained_intron ENSMUSG00000038502 Ptov1 ENSMUST00000209018 ENSMUSP00000146761 TRANSLATION protein_coding start/stop - 5 73.0 0.0 2.08 0.0 42.8 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000038502 Ptov1 ENSMUST00000207363 ENSMUSP00000146633 TRANSLATION protein_coding start/stop - 5 136.0 0.0 3.612 0.0 159.4 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000038502 Ptov1 ENSMUST00000208687 - NO_TRANSLATION retained_intron ENSMUSG00000038502 Ptov1 ENSMUST00000208765 - NO_TRANSLATION retained_intron ENSMUSG00000038502 Ptov1 ENSMUST00000209003 - NO_TRANSLATION retained_intron ENSMUSG00000038502 Ptov1 ENSMUST00000207303 - NO_TRANSLATION retained_intron ENSMUSG00000038502 Ptov1 ENSMUST00000046575 ENSMUSP00000035281 TRANSLATION protein_coding - CCDS21219.1 1 416.0 0.0 8.302 7.1 366.7 0.0 -4,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000038502 Ptov1 ENSMUST00000208682 ENSMUSP00000146587 TRANSLATION protein_coding start - 5 247.0 0.0 2.86 0.0 108.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000038502 Ptov1 ENSMUST00000208991 - NO_TRANSLATION retained_intron ENSMUSG00000038502 Ptov1 ENSMUST00000209139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038502 Ptov1 ENSMUST00000208410 ENSMUSP00000147094 TRANSLATION protein_coding start/stop - 5 132.0 0.0 3.442 0.0 100.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000038502 Ptov1 ENSMUST00000207416 ENSMUSP00000147048 TRANSLATION nonsense_mediated_decay start - 2 158.0 0.0 4.042 0.0 180.5 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000003273 Car11 ENSMUST00000211259 - NO_TRANSLATION retained_intron ENSMUSG00000003273 Car11 ENSMUST00000210027 ENSMUSP00000148222 TRANSLATION nonsense_mediated_decay start - 5 26.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000003273 Car11 ENSMUST00000003360 ENSMUSP00000003360 TRANSLATION protein_coding - CCDS21259.1 1 328.0 0.0 7.44 10.0 184.4 0.0 2,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000003273 Car11 ENSMUST00000210872 - NO_TRANSLATION retained_intron ENSMUSG00000003273 Car11 ENSMUST00000209796 ENSMUSP00000147551 TRANSLATION nonsense_mediated_decay start - 5 82.0 0.0 2.0 0.0 20.8 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000046096 Mosmo ENSMUST00000208319 - NO_TRANSLATION retained_intron ENSMUSG00000046096 Mosmo ENSMUST00000208534 - NO_TRANSLATION retained_intron ENSMUSG00000046096 Mosmo ENSMUST00000208627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046096 Mosmo ENSMUST00000208454 ENSMUSP00000146331 TRANSLATION protein_coding - - 2 108.0 0.0 2.5 0.0 0.0 2.0 -3,-4 0.0105 - 4.002 MINOR ENSMUSG00000046096 Mosmo ENSMUST00000207646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046096 Mosmo ENSMUST00000208873 ENSMUSP00000146833 TRANSLATION protein_coding start - 1 89.0 0.0 1.0 0.0 0.0 2.0 -2,-5 0.0153 - -2.0 MINOR ENSMUSG00000046096 Mosmo ENSMUST00000060175 ENSMUSP00000055934 TRANSLATION protein_coding - CCDS52381.1 1 167.0 0.0 3.5 30.2 0.0 4.0 -3,-4 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000046096 Mosmo ENSMUST00000207065 ENSMUSP00000147078 TRANSLATION nonsense_mediated_decay - - 3 92.0 0.0 1.04 0.0 0.0 0.0 -3,-4 0.0045 - -2.0 MINOR ENSMUSG00000045362 Tnfrsf26 ENSMUST00000055723 ENSMUSP00000054938 TRANSLATION protein_coding - CCDS40199.1 1 204.0 0.0 3.166 0.0 71.8 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000045362 Tnfrsf26 ENSMUST00000208124 ENSMUSP00000146662 TRANSLATION protein_coding - - 1 66.0 0.0 0.766 0.0 0.0 0.0 -4,-6 0.0 - 1.2 MINOR ENSMUSG00000094542 Vmn1r149 ENSMUST00000165916 ENSMUSP00000132932 TRANSLATION protein_coding - CCDS52113.1 - 307.0 0.0 0.0 0.4 49.9 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030882 Dnhd1 ENSMUST00000106776 ENSMUSP00000102388 TRANSLATION protein_coding - - 1 285.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.002 - 0.0 MINOR ENSMUSG00000030882 Dnhd1 ENSMUST00000145988 ENSMUSP00000121261 TRANSLATION protein_coding - - 5 4750.0 0.0 2.164 0.0 616.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030882 Dnhd1 ENSMUST00000128388 - NO_TRANSLATION retained_intron ENSMUSG00000078810 Gp6 ENSMUST00000206928 ENSMUSP00000145740 TRANSLATION protein_coding - CCDS51972.1 1 313.0 0.0 2.55 0.0 71.7 1.0 -1,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000078810 Gp6 ENSMUST00000108590 ENSMUSP00000104231 TRANSLATION protein_coding - - 1 296.0 0.0 2.45 0.0 71.7 1.0 -1,-3 0.0876 - 7.766 ALTERNATIVE:2 ENSMUSG00000095257 Scgb1b3 ENSMUST00000179481 ENSMUSP00000136099 TRANSLATION protein_coding - CCDS57535.1 1 93.0 0.0 1.48 0.9 76.1 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048965 Mrgpre ENSMUST00000054048 ENSMUSP00000058000 TRANSLATION protein_coding - CCDS22046.1 1 310.0 0.0 0.6 0.4 22.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000070369 Itgad ENSMUST00000176249 ENSMUSP00000135309 TRANSLATION protein_coding start - 2 96.0 0.0 0.75 0.0 0.0 2.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000070369 Itgad ENSMUST00000106237 ENSMUSP00000101844 TRANSLATION protein_coding - - 1 1168.0 19.0 23.39 0.0 331.3 2.0 -4,-2 0.8474 17 14.0 ALTERNATIVE:2 ENSMUSG00000070369 Itgad ENSMUST00000033051 ENSMUSP00000033051 TRANSLATION protein_coding - CCDS21890.2 1 1202.0 19.0 23.39 0.0 310.5 2.0 4,-1 0.6214 17 13.6 MINOR ENSMUSG00000070369 Itgad ENSMUST00000177111 ENSMUSP00000135572 TRANSLATION protein_coding - - 5 1166.0 19.0 23.39 0.0 331.3 2.0 4,-1 0.9856 17 14.0 PRINCIPAL:4 ENSMUSG00000070369 Itgad ENSMUST00000177383 ENSMUSP00000135104 TRANSLATION protein_coding start - 3 107.0 0.0 1.0 0.0 25.7 2.0 -4,-7 0.0007 - -2.0 MINOR ENSMUSG00000121605 Ahsp ENSMUST00000249663 ENSMUSP00000159842 TRANSLATION protein_coding - - - 102.0 0.0 1.75 4.7 152.2 0.0 -4,-5 0.9671 3 14.0 PRINCIPAL:1 ENSMUSG00000121605 Ahsp ENSMUST00000249664 ENSMUSP00000159843 TRANSLATION protein_coding - - - 102.0 0.0 1.75 4.7 152.2 0.0 -4,-5 0.9671 3 14.0 PRINCIPAL:1 ENSMUSG00000110190 Zscan4-ps2 ENSMUST00000091440 ENSMUSP00000089014 TRANSLATION protein_coding - - 1 506.0 15.0 0.2 0.0 112.8 0.0 -4,-5 0.7932 - 18.0 PRINCIPAL:1 ENSMUSG00000097789 Ctxnd1 ENSMUST00000208409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000097789 Ctxnd1 ENSMUST00000180387 ENSMUSP00000148068 TRANSLATION protein_coding - - 1 59.0 0.0 1.0 14.4 53.7 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095239 Or5p72 ENSMUST00000213521 ENSMUSP00000150439 TRANSLATION protein_coding - CCDS21715.1 3 314.0 0.0 1.0 6.7 182.4 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095239 Or5p72 ENSMUST00000076406 ENSMUSP00000075741 TRANSLATION protein_coding - CCDS21715.1 - 314.0 0.0 1.0 6.7 182.4 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095629 Vmn1r89 ENSMUST00000228587 ENSMUSP00000154359 TRANSLATION protein_coding - CCDS20830.1 - 316.0 0.0 0.0 1.3 113.7 7.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000095629 Vmn1r89 ENSMUST00000228825 - NO_TRANSLATION retained_intron ENSMUSG00000095629 Vmn1r89 ENSMUST00000228795 - NO_TRANSLATION retained_intron ENSMUSG00000095629 Vmn1r89 ENSMUST00000227276 ENSMUSP00000154599 TRANSLATION protein_coding - - - 271.0 0.0 0.0 0.0 100.5 6.0 -4,-5 0.0149 - 5.208 MINOR ENSMUSG00000095629 Vmn1r89 ENSMUST00000053008 ENSMUSP00000096413 TRANSLATION protein_coding - CCDS20830.1 - 316.0 0.0 0.0 1.3 113.7 7.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000095629 Vmn1r89 ENSMUST00000227176 ENSMUSP00000154366 TRANSLATION protein_coding - CCDS20830.1 - 316.0 0.0 0.0 1.3 113.7 7.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000095629 Vmn1r89 ENSMUST00000226717 ENSMUSP00000154060 TRANSLATION protein_coding - CCDS20830.1 - 316.0 0.0 0.0 1.3 113.7 7.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000095629 Vmn1r89 ENSMUST00000227319 ENSMUSP00000154046 TRANSLATION protein_coding - - - 127.0 0.0 0.0 0.0 53.0 2.0 -4,-7 0.0027 - 2.358 MINOR ENSMUSG00000095629 Vmn1r89 ENSMUST00000227239 ENSMUSP00000154425 TRANSLATION protein_coding - CCDS20830.1 - 316.0 0.0 0.0 1.3 113.7 7.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000095629 Vmn1r89 ENSMUST00000227390 ENSMUSP00000154139 TRANSLATION protein_coding - - - 248.0 0.0 0.0 0.0 100.8 6.0 -4,-7 0.0177 - 5.226 MINOR ENSMUSG00000045411 2410002F23Rik ENSMUST00000145653 ENSMUSP00000116980 TRANSLATION protein_coding stop - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0113 2 -2.0 MINOR ENSMUSG00000045411 2410002F23Rik ENSMUST00000146155 ENSMUSP00000117318 TRANSLATION protein_coding stop - 3 134.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0158 3 -2.0 MINOR ENSMUSG00000045411 2410002F23Rik ENSMUST00000137702 ENSMUSP00000119445 TRANSLATION protein_coding stop - 5 156.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0171 3 -2.0 MINOR ENSMUSG00000045411 2410002F23Rik ENSMUST00000136210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045411 2410002F23Rik ENSMUST00000187524 ENSMUSP00000140017 TRANSLATION protein_coding stop - 5 94.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0159 3 -2.0 MINOR ENSMUSG00000045411 2410002F23Rik ENSMUST00000188476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045411 2410002F23Rik ENSMUST00000084937 ENSMUSP00000095894 TRANSLATION protein_coding - CCDS52228.1 2 284.0 0.0 0.0 2.2 0.0 0.0 -4,-6 1.0 6 1.0 PRINCIPAL:2 ENSMUSG00000045411 2410002F23Rik ENSMUST00000107950 ENSMUSP00000103584 TRANSLATION protein_coding - CCDS52228.1 2 284.0 0.0 0.0 2.2 0.0 0.0 -4,-6 1.0 6 1.0 PRINCIPAL:2 ENSMUSG00000045411 2410002F23Rik ENSMUST00000188111 ENSMUSP00000139694 TRANSLATION protein_coding - CCDS52228.1 2 284.0 0.0 0.0 2.2 0.0 0.0 -4,-6 1.0 6 1.0 PRINCIPAL:2 ENSMUSG00000045411 2410002F23Rik ENSMUST00000107948 ENSMUSP00000103581 TRANSLATION protein_coding - CCDS52228.1 2 284.0 0.0 0.0 2.2 0.0 0.0 -4,-6 1.0 6 1.0 PRINCIPAL:2 ENSMUSG00000045411 2410002F23Rik ENSMUST00000186606 ENSMUSP00000139441 TRANSLATION protein_coding - - 5 167.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.0583 3 0.0 ALTERNATIVE:2 ENSMUSG00000045411 2410002F23Rik ENSMUST00000144905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045411 2410002F23Rik ENSMUST00000138978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045411 2410002F23Rik ENSMUST00000188382 ENSMUSP00000140200 TRANSLATION protein_coding - CCDS52228.1 5 284.0 0.0 0.0 2.2 0.0 0.0 -4,-6 1.0 6 1.0 PRINCIPAL:2 ENSMUSG00000045411 2410002F23Rik ENSMUST00000055858 ENSMUSP00000103583 TRANSLATION protein_coding - CCDS52228.1 1 284.0 0.0 0.0 2.2 0.0 0.0 -4,-6 1.0 6 1.0 PRINCIPAL:2 ENSMUSG00000045411 2410002F23Rik ENSMUST00000191537 ENSMUSP00000141077 TRANSLATION protein_coding - - 5 167.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.0583 3 0.0 ALTERNATIVE:2 ENSMUSG00000045411 2410002F23Rik ENSMUST00000185481 ENSMUSP00000139913 TRANSLATION protein_coding stop - 5 101.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0159 3 -2.0 MINOR ENSMUSG00000045411 2410002F23Rik ENSMUST00000187581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045411 2410002F23Rik ENSMUST00000071296 ENSMUSP00000071265 TRANSLATION protein_coding - CCDS52228.1 2 284.0 0.0 0.0 2.2 0.0 0.0 -4,-6 1.0 6 1.0 PRINCIPAL:2 ENSMUSG00000045411 2410002F23Rik ENSMUST00000107949 ENSMUSP00000103582 TRANSLATION protein_coding - CCDS52228.1 2 284.0 0.0 0.0 2.2 0.0 0.0 -4,-6 1.0 6 1.0 PRINCIPAL:2 ENSMUSG00000042909 Or52h1 ENSMUST00000216612 ENSMUSP00000149047 TRANSLATION protein_coding - CCDS21613.1 2 316.0 0.0 1.0 11.5 370.4 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042909 Or52h1 ENSMUST00000052659 ENSMUSP00000062529 TRANSLATION protein_coding - CCDS21613.1 - 316.0 0.0 1.0 11.5 370.4 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041885 Or56a41 ENSMUST00000042676 ENSMUSP00000154703 TRANSLATION protein_coding - - - 311.0 0.0 2.0 11.8 236.8 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046321 Hs3st2 ENSMUST00000206880 ENSMUSP00000146027 TRANSLATION protein_coding - - 1 176.0 9.0 0.9 0.0 27.4 0.0 -4,-7 0.0 - 3.0 MINOR ENSMUSG00000046321 Hs3st2 ENSMUST00000084628 ENSMUSP00000081678 TRANSLATION protein_coding - CCDS40115.1 1 367.0 21.0 1.8 8.6 159.0 0.0 -4,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000046056 Sbsn ENSMUST00000182227 ENSMUSP00000138427 TRANSLATION protein_coding - - 5 92.0 0.0 0.0 0.1 0.0 0.0 3,-2 0.1091 - 0.0 ALTERNATIVE:2 ENSMUSG00000046056 Sbsn ENSMUST00000080518 ENSMUSP00000079362 TRANSLATION protein_coding - CCDS39891.1 1 682.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.9815 23 0.0 PRINCIPAL:2 ENSMUSG00000046056 Sbsn ENSMUST00000182577 - NO_TRANSLATION retained_intron ENSMUSG00000046056 Sbsn ENSMUST00000182721 ENSMUSP00000138654 TRANSLATION protein_coding - - 3 176.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.1102 4 0.0 ALTERNATIVE:2 ENSMUSG00000046056 Sbsn ENSMUST00000182229 ENSMUSP00000138561 TRANSLATION protein_coding - CCDS59725.1 1 164.0 0.0 0.0 0.1 0.0 0.0 3,-2 0.3436 3 0.0 ALTERNATIVE:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000226733 ENSMUSP00000154629 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000226128 ENSMUSP00000154091 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000228681 ENSMUSP00000153978 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000226321 ENSMUSP00000154452 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000228674 ENSMUSP00000153866 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000228559 ENSMUSP00000154453 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000228228 ENSMUSP00000153858 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000228484 ENSMUSP00000154604 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000227386 ENSMUSP00000153743 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000227866 ENSMUSP00000154230 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000226771 ENSMUSP00000154651 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000078458 ENSMUSP00000077552 TRANSLATION protein_coding - CCDS39822.1 - 316.0 0.0 0.0 0.0 65.2 8.0 -4,-7 0.3671 - 2.0 ALTERNATIVE:2 ENSMUSG00000062483 Vmn1r171 ENSMUST00000227774 ENSMUSP00000154330 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.4 65.2 8.0 -3,-4 0.7256 - 2.0 PRINCIPAL:2 ENSMUSG00000057143 Trim12c ENSMUST00000130139 ENSMUSP00000116775 TRANSLATION protein_coding - CCDS52344.1 1 497.0 16.0 3.624 0.3 117.3 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000057143 Trim12c ENSMUST00000059037 ENSMUSP00000060100 TRANSLATION protein_coding - CCDS52344.1 1 497.0 16.0 3.624 0.3 117.3 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000070873 Lilra5 ENSMUST00000117550 ENSMUSP00000113091 TRANSLATION protein_coding - CCDS51971.1 1 295.0 0.0 2.373 0.4 48.0 0.0 2,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030844 Rgs10 ENSMUST00000033133 ENSMUSP00000033133 TRANSLATION protein_coding - CCDS21896.1 1 181.0 0.0 3.75 18.4 115.0 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000030844 Rgs10 ENSMUST00000147840 ENSMUSP00000122030 TRANSLATION protein_coding stop - 2 85.0 0.0 1.75 0.0 48.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030844 Rgs10 ENSMUST00000129120 - NO_TRANSLATION retained_intron ENSMUSG00000030844 Rgs10 ENSMUST00000145739 ENSMUSP00000146128 TRANSLATION protein_coding - - 1 93.0 0.0 1.915 0.0 52.1 0.0 -4,-7 0.0 2 4.554 MINOR ENSMUSG00000030844 Rgs10 ENSMUST00000129144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030844 Rgs10 ENSMUST00000134144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011263 Exoc3l2 ENSMUST00000137613 ENSMUSP00000123025 TRANSLATION protein_coding - - 5 789.0 0.0 3.578 0.3 182.6 0.0 -4,-7 0.8013 8 12.0 PRINCIPAL:1 ENSMUSG00000015709 Arnt2 ENSMUST00000208129 ENSMUSP00000146614 TRANSLATION nonsense_mediated_decay start - 3 160.0 0.0 2.3575 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000015709 Arnt2 ENSMUST00000207769 ENSMUSP00000146414 TRANSLATION protein_coding stop - 3 167.0 0.0 2.7 0.0 51.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000015709 Arnt2 ENSMUST00000085077 ENSMUSP00000082154 TRANSLATION protein_coding - CCDS59733.1 1 712.0 0.0 7.8075 24.8 175.5 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000015709 Arnt2 ENSMUST00000209133 ENSMUSP00000147129 TRANSLATION protein_coding - - 5 701.0 0.0 7.8075 10.9 175.5 0.0 -4,-6 0.6623 9 13.664 MINOR ENSMUSG00000015709 Arnt2 ENSMUST00000208995 ENSMUSP00000146599 TRANSLATION protein_coding stop - 5 206.0 0.0 3.964 0.0 98.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000015709 Arnt2 ENSMUST00000208564 ENSMUSP00000146989 TRANSLATION nonsense_mediated_decay start - 3 123.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000015709 Arnt2 ENSMUST00000208204 ENSMUSP00000146781 TRANSLATION nonsense_mediated_decay start - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000015709 Arnt2 ENSMUST00000208232 ENSMUSP00000146413 TRANSLATION protein_coding - - 1 701.0 0.0 7.8075 10.9 175.5 0.0 -4,-6 0.6623 9 13.664 MINOR ENSMUSG00000015709 Arnt2 ENSMUST00000208392 ENSMUSP00000146776 TRANSLATION protein_coding stop - 3 91.0 0.0 1.1 0.0 35.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000015709 Arnt2 ENSMUST00000207459 - NO_TRANSLATION retained_intron ENSMUSG00000015709 Arnt2 ENSMUST00000207759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015709 Arnt2 ENSMUST00000208936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015709 Arnt2 ENSMUST00000208863 ENSMUSP00000146868 TRANSLATION protein_coding stop - 3 93.0 0.0 1.1 0.0 38.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000030714 Sgf29 ENSMUST00000032956 ENSMUSP00000032956 TRANSLATION protein_coding - CCDS21837.1 1 293.0 0.0 5.47195 28.9 136.9 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000030714 Sgf29 ENSMUST00000123571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030714 Sgf29 ENSMUST00000206359 ENSMUSP00000145562 TRANSLATION nonsense_mediated_decay - - 5 152.0 0.0 1.32095 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030714 Sgf29 ENSMUST00000129786 ENSMUSP00000145680 TRANSLATION protein_coding start - 2 160.0 0.0 4.0 0.0 112.7 0.0 0,-5 0.0019 2 -2.0 MINOR ENSMUSG00000030714 Sgf29 ENSMUST00000123274 - NO_TRANSLATION retained_intron ENSMUSG00000030714 Sgf29 ENSMUST00000123382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030714 Sgf29 ENSMUST00000205507 ENSMUSP00000146122 TRANSLATION nonsense_mediated_decay - - 5 163.0 0.0 1.22195 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030714 Sgf29 ENSMUST00000138794 - NO_TRANSLATION retained_intron ENSMUSG00000030714 Sgf29 ENSMUST00000126570 ENSMUSP00000145654 TRANSLATION protein_coding stop - 5 18.0 0.0 0.05445 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030714 Sgf29 ENSMUST00000152231 - NO_TRANSLATION retained_intron ENSMUSG00000094682 Gm6902 ENSMUST00000191169 ENSMUSP00000140400 TRANSLATION protein_coding - CCDS57522.1 1 301.0 17.0 1.0 0.0 242.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000094682 Gm6902 ENSMUST00000179072 ENSMUSP00000136627 TRANSLATION protein_coding - CCDS57522.1 1 301.0 17.0 1.0 0.0 242.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095064 Vmn1r135 ENSMUST00000170931 ENSMUSP00000131702 TRANSLATION protein_coding - CCDS52102.1 - 307.0 0.0 0.0 0.4 53.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000034990 Otoa ENSMUST00000047025 ENSMUSP00000044177 TRANSLATION protein_coding - CCDS40114.1 1 1137.0 0.0 0.0 2.4 0.0 0.0 1,-2 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000034990 Otoa ENSMUST00000165409 ENSMUSP00000146993 TRANSLATION nonsense_mediated_decay start - 1 70.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0237 - -2.0 MINOR ENSMUSG00000034990 Otoa ENSMUST00000207598 - NO_TRANSLATION retained_intron ENSMUSG00000034990 Otoa ENSMUST00000168311 ENSMUSP00000132951 TRANSLATION protein_coding stop - 3 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0693 - -2.0 MINOR ENSMUSG00000034990 Otoa ENSMUST00000170106 ENSMUSP00000133005 TRANSLATION protein_coding stop - 3 209.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0919 - -2.0 MINOR ENSMUSG00000034990 Otoa ENSMUST00000171880 ENSMUSP00000125928 TRANSLATION protein_coding stop - 3 17.0 0.0 0.0 0.0 0.0 0.0 -2,-7 0.0505 - -2.0 MINOR ENSMUSG00000034990 Otoa ENSMUST00000163275 ENSMUSP00000146799 TRANSLATION nonsense_mediated_decay start - 1 68.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0249 - -2.0 MINOR ENSMUSG00000030681 Mvp ENSMUST00000206511 - NO_TRANSLATION retained_intron ENSMUSG00000030681 Mvp ENSMUST00000133172 ENSMUSP00000119213 TRANSLATION protein_coding stop - 3 134.0 0.0 2.5 0.0 0.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000030681 Mvp ENSMUST00000165096 ENSMUSP00000127250 TRANSLATION protein_coding - CCDS40136.2 1 870.0 0.0 13.25 0.3 368.0 0.0 -4,-6 1.0 33 12.0 PRINCIPAL:1 ENSMUSG00000094156 Sult2a7 ENSMUST00000209744 ENSMUSP00000147343 TRANSLATION protein_coding - - 5 199.0 10.0 4.465 0.0 159.8 0.0 -4,-6 0.0 - 2.01 MINOR ENSMUSG00000094156 Sult2a7 ENSMUST00000108524 ENSMUSP00000104164 TRANSLATION protein_coding - CCDS57496.1 5 298.0 19.0 5.96 0.0 238.6 0.0 -4,-6 0.0951 - 10.998 ALTERNATIVE:2 ENSMUSG00000094156 Sult2a7 ENSMUST00000211740 ENSMUSP00000147494 TRANSLATION protein_coding - - 5 313.0 19.0 6.46 0.0 238.6 0.0 -4,-6 0.7709 - 12.0 PRINCIPAL:2 ENSMUSG00000094156 Sult2a7 ENSMUST00000210034 ENSMUSP00000147959 TRANSLATION protein_coding - - 5 166.0 10.0 3.165 0.0 141.4 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000030884 Uqcrc2 ENSMUST00000033176 ENSMUSP00000033176 TRANSLATION protein_coding - CCDS21795.1 1 453.0 0.0 10.705 14.7 188.3 0.0 -4,0 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000030884 Uqcrc2 ENSMUST00000208400 ENSMUSP00000146732 TRANSLATION protein_coding stop - 3 145.0 0.0 3.375 0.0 65.0 0.0 -4,0 0.0 4 -2.0 MINOR ENSMUSG00000030884 Uqcrc2 ENSMUST00000137808 - NO_TRANSLATION retained_intron ENSMUSG00000030884 Uqcrc2 ENSMUST00000150675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030884 Uqcrc2 ENSMUST00000131191 - NO_TRANSLATION retained_intron ENSMUSG00000030884 Uqcrc2 ENSMUST00000123704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043366 Or51e2 ENSMUST00000209365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043366 Or51e2 ENSMUST00000168007 ENSMUSP00000133255 TRANSLATION protein_coding - CCDS21546.1 1 320.0 0.0 1.0 10.7 370.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043366 Or51e2 ENSMUST00000217123 ENSMUSP00000149274 TRANSLATION protein_coding - CCDS21546.1 1 320.0 0.0 1.0 10.7 370.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043366 Or51e2 ENSMUST00000060187 ENSMUSP00000058085 TRANSLATION protein_coding - CCDS21546.1 1 320.0 0.0 1.0 10.7 370.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078799 Sult2a5 ENSMUST00000108525 ENSMUSP00000104165 TRANSLATION protein_coding - CCDS52029.1 1 285.0 19.0 6.0 7.9 270.0 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000030759 Far1 ENSMUST00000123591 - NO_TRANSLATION retained_intron ENSMUSG00000030759 Far1 ENSMUST00000123845 - NO_TRANSLATION retained_intron ENSMUSG00000030759 Far1 ENSMUST00000067929 ENSMUSP00000064334 TRANSLATION protein_coding - CCDS72024.1 1 515.0 32.0 11.75 36.9 378.9 1.0 -4,-5 1.0 10 18.0 ALTERNATIVE:1 ENSMUSG00000030759 Far1 ENSMUST00000156554 - NO_TRANSLATION retained_intron ENSMUSG00000030759 Far1 ENSMUST00000164745 ENSMUSP00000128695 TRANSLATION protein_coding - CCDS40093.1 5 515.0 32.0 11.75 36.9 373.7 1.0 -4,-5 0.9909 11 18.0 PRINCIPAL:3 ENSMUSG00000030759 Far1 ENSMUST00000033018 ENSMUSP00000033018 TRANSLATION protein_coding - CCDS40093.1 1 515.0 32.0 11.75 36.9 373.7 1.0 -4,-5 0.9909 11 18.0 PRINCIPAL:3 ENSMUSG00000030759 Far1 ENSMUST00000122890 ENSMUSP00000123274 TRANSLATION protein_coding stop - 3 37.0 5.0 1.0 0.0 34.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030759 Far1 ENSMUST00000151133 - NO_TRANSLATION retained_intron ENSMUSG00000030759 Far1 ENSMUST00000129087 ENSMUSP00000117131 TRANSLATION protein_coding stop - 3 181.0 24.0 3.75 0.0 174.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000030759 Far1 ENSMUST00000155183 - NO_TRANSLATION retained_intron ENSMUSG00000030759 Far1 ENSMUST00000136158 ENSMUSP00000122643 TRANSLATION protein_coding stop - 3 206.0 29.0 4.5 0.0 179.4 0.0 -4,-5 0.0006 6 -2.0 MINOR ENSMUSG00000048583 Igf2 ENSMUST00000178921 ENSMUSP00000136786 TRANSLATION protein_coding stop - 5 121.0 0.0 1.8 0.0 32.3 0.0 -2,2 0.0 1 -2.0 MINOR ENSMUSG00000048583 Igf2 ENSMUST00000163148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048583 Igf2 ENSMUST00000143666 - NO_TRANSLATION retained_intron ENSMUSG00000048583 Igf2 ENSMUST00000105936 ENSMUSP00000101556 TRANSLATION protein_coding - CCDS52458.1 2 180.0 0.0 2.1 7.5 124.6 0.0 2,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000048583 Igf2 ENSMUST00000105935 ENSMUSP00000101555 TRANSLATION protein_coding - CCDS52458.1 3 180.0 0.0 2.1 7.5 124.6 0.0 2,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000048583 Igf2 ENSMUST00000145896 ENSMUSP00000122653 TRANSLATION protein_coding stop - 5 103.0 0.0 2.1 0.0 32.3 0.0 2,-3 0.0412 2 -2.0 MINOR ENSMUSG00000048583 Igf2 ENSMUST00000121128 ENSMUSP00000114076 TRANSLATION protein_coding - CCDS22033.2 2 191.0 0.0 2.1 0.1 124.6 0.0 0,-3 0.2702 2 12.0 MINOR ENSMUSG00000048583 Igf2 ENSMUST00000000033 ENSMUSP00000000033 TRANSLATION protein_coding - CCDS52458.1 1 180.0 0.0 2.1 7.5 124.6 0.0 2,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000078759 Scgb1b7 ENSMUST00000108097 ENSMUSP00000103732 TRANSLATION protein_coding - CCDS57537.1 1 93.0 0.0 1.48 0.9 72.2 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000093890 Vmn1r127 ENSMUST00000105199 ENSMUSP00000100834 TRANSLATION protein_coding - CCDS52095.1 - 305.0 0.0 0.0 0.4 56.8 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054102 Nlrp9a ENSMUST00000153452 ENSMUSP00000120498 TRANSLATION protein_coding stop - 5 751.0 6.0 2.8 0.0 107.0 0.0 -4,-5 0.0082 - -2.0 MINOR ENSMUSG00000054102 Nlrp9a ENSMUST00000071780 ENSMUSP00000071685 TRANSLATION protein_coding - CCDS39845.1 5 949.0 6.0 5.798 0.0 211.1 0.0 -4,-5 0.2587 - 13.598 ALTERNATIVE:2 ENSMUSG00000054102 Nlrp9a ENSMUST00000143149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054102 Nlrp9a ENSMUST00000117252 ENSMUSP00000112398 TRANSLATION protein_coding - - 2 931.0 6.0 4.899 0.0 191.6 0.0 -4,-5 0.0325 - 11.204 MINOR ENSMUSG00000054102 Nlrp9a ENSMUST00000122040 ENSMUSP00000113318 TRANSLATION protein_coding - CCDS39845.1 1 949.0 6.0 5.798 0.0 211.1 0.0 -4,-5 0.2587 - 13.598 ALTERNATIVE:2 ENSMUSG00000054102 Nlrp9a ENSMUST00000108387 ENSMUSP00000104024 TRANSLATION protein_coding - CCDS39844.1 1 1004.0 6.0 5.998 0.1 211.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000030713 Klk7 ENSMUST00000032955 ENSMUSP00000032955 TRANSLATION protein_coding - CCDS21183.1 1 249.0 6.0 4.0 0.4 227.5 0.0 3,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000030513 Pcsk6 ENSMUST00000176209 ENSMUSP00000135033 TRANSLATION protein_coding start - 5 798.0 10.0 9.904 0.0 410.2 0.0 -4,-5 0.016 6 -2.0 MINOR ENSMUSG00000030513 Pcsk6 ENSMUST00000098391 ENSMUSP00000095992 TRANSLATION protein_coding - CCDS71978.1 1 946.0 10.0 11.704 0.0 463.8 0.0 0,3 1.0 7 14.0 PRINCIPAL:2 ENSMUSG00000030513 Pcsk6 ENSMUST00000177369 - NO_TRANSLATION retained_intron ENSMUSG00000030513 Pcsk6 ENSMUST00000055576 ENSMUSP00000053742 TRANSLATION protein_coding - CCDS52267.1 5 959.0 10.0 11.704 0.0 463.8 0.0 0,3 0.6202 7 14.0 ALTERNATIVE:2 ENSMUSG00000030513 Pcsk6 ENSMUST00000177272 - NO_TRANSLATION retained_intron ENSMUSG00000030513 Pcsk6 ENSMUST00000176199 ENSMUSP00000135851 TRANSLATION protein_coding stop - 3 164.0 9.0 3.7 0.0 71.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000058717 Lypd11 ENSMUST00000205376 ENSMUSP00000145595 TRANSLATION protein_coding - - 3 192.0 0.0 2.0 0.0 0.0 0.0 3,-2 0.0493 - 3.804 MINOR ENSMUSG00000058717 Lypd11 ENSMUST00000206243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058717 Lypd11 ENSMUST00000081657 ENSMUSP00000080361 TRANSLATION protein_coding - CCDS39832.1 1 196.0 0.0 3.099 0.0 29.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000118388 Vmn1r64 ENSMUST00000078475 ENSMUSP00000077568 TRANSLATION protein_coding - CCDS20766.1 - 320.0 0.0 0.0 0.0 65.1 0.0 0,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061479 Snrpa ENSMUST00000141378 ENSMUSP00000119818 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000061479 Snrpa ENSMUST00000163311 ENSMUSP00000131897 TRANSLATION protein_coding - CCDS21014.1 2 287.0 0.0 5.7 0.0 97.1 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000061479 Snrpa ENSMUST00000122202 ENSMUSP00000113678 TRANSLATION protein_coding - CCDS21014.1 1 287.0 0.0 5.7 0.0 97.1 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000061479 Snrpa ENSMUST00000148491 - NO_TRANSLATION retained_intron ENSMUSG00000061479 Snrpa ENSMUST00000126211 ENSMUSP00000115335 TRANSLATION protein_coding stop - 2 247.0 0.0 4.7 0.0 66.7 0.0 -4,-5 0.0012 5 -2.0 MINOR ENSMUSG00000061479 Snrpa ENSMUST00000080356 ENSMUSP00000079228 TRANSLATION protein_coding - CCDS21014.1 1 287.0 0.0 5.7 0.0 97.1 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000061479 Snrpa ENSMUST00000206439 - NO_TRANSLATION retained_intron ENSMUSG00000107068 Gm42742 ENSMUST00000161728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000107068 Gm42742 ENSMUST00000201606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000107068 Gm42742 ENSMUST00000032918 - NO_TRANSLATION retained_intron ENSMUSG00000107068 Gm42742 ENSMUST00000202624 ENSMUSP00000144099 TRANSLATION protein_coding,RT stop - 3 176.0 0.0 0.0 0.0 101.0 0.0 -2,-3 0.0 - -2.0 MINOR ENSMUSG00000107068 Gm42742 ENSMUST00000202798 ENSMUSP00000144243 TRANSLATION protein_coding - CCDS21854.1 1 253.0 0.0 0.0 10.9 169.9 0.0 -2,-3 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000008461 Fut1 ENSMUST00000008605 ENSMUSP00000008605 TRANSLATION protein_coding - CCDS21254.1 1 377.0 0.0 1.0 0.4 410.9 0.0 0,-5 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000008461 Fut1 ENSMUST00000210150 ENSMUSP00000147602 TRANSLATION protein_coding stop - 5 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0322 - -2.0 MINOR ENSMUSG00000008461 Fut1 ENSMUST00000209379 ENSMUSP00000147274 TRANSLATION protein_coding - CCDS85303.1 1 322.0 0.0 1.0 0.0 406.9 0.0 -4,-5 0.2281 4 6.0 MINOR ENSMUSG00000073973 Or52k2 ENSMUST00000215712 ENSMUSP00000150317 TRANSLATION protein_coding - CCDS21537.1 5 317.0 0.0 1.0 15.3 389.8 6.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073973 Or52k2 ENSMUST00000098223 ENSMUSP00000095826 TRANSLATION protein_coding - CCDS21537.1 - 317.0 0.0 1.0 15.3 389.8 6.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073953 Or52e19 ENSMUST00000104880 ENSMUSP00000100475 TRANSLATION protein_coding - CCDS52335.1 - 312.0 0.0 1.0 12.5 401.6 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073953 Or52e19 ENSMUST00000214577 ENSMUSP00000149187 TRANSLATION protein_coding - CCDS52335.1 5 312.0 0.0 1.0 12.5 401.6 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030703 Gdpd3 ENSMUST00000207004 - NO_TRANSLATION retained_intron ENSMUSG00000030703 Gdpd3 ENSMUST00000206350 - NO_TRANSLATION retained_intron ENSMUSG00000030703 Gdpd3 ENSMUST00000205910 - NO_TRANSLATION retained_intron ENSMUSG00000030703 Gdpd3 ENSMUST00000032944 ENSMUSP00000032944 TRANSLATION protein_coding - CCDS40130.1 1 330.0 6.0 8.25 0.0 76.6 0.0 -1,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000030703 Gdpd3 ENSMUST00000206858 - NO_TRANSLATION retained_intron ENSMUSG00000030703 Gdpd3 ENSMUST00000205468 - NO_TRANSLATION retained_intron ENSMUSG00000066515 Klk1b3 ENSMUST00000085450 ENSMUSP00000082577 TRANSLATION protein_coding - CCDS21199.1 1 261.0 10.0 4.0 7.8 247.0 0.0 4,-1 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000030555 Ttc23 ENSMUST00000208764 ENSMUSP00000146428 TRANSLATION nonsense_mediated_decay start - 5 252.0 0.0 2.8 0.0 0.0 0.0 -4,-5 0.0061 1 -2.0 MINOR ENSMUSG00000030555 Ttc23 ENSMUST00000107471 ENSMUSP00000103095 TRANSLATION protein_coding - CCDS52270.1 1 446.0 0.0 5.148 5.6 0.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000030555 Ttc23 ENSMUST00000153475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030555 Ttc23 ENSMUST00000107470 ENSMUSP00000103094 TRANSLATION protein_coding - CCDS52270.1 5 446.0 0.0 5.148 5.6 0.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000030555 Ttc23 ENSMUST00000137919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030555 Ttc23 ENSMUST00000032774 ENSMUSP00000032774 TRANSLATION protein_coding - CCDS21352.1 1 488.0 0.0 4.148 0.0 0.0 0.0 -4,-5 0.0739 2 4.002 MINOR ENSMUSG00000030555 Ttc23 ENSMUST00000126093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030555 Ttc23 ENSMUST00000133710 - NO_TRANSLATION retained_intron ENSMUSG00000030555 Ttc23 ENSMUST00000135236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030555 Ttc23 ENSMUST00000125839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030555 Ttc23 ENSMUST00000154697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030555 Ttc23 ENSMUST00000145348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030555 Ttc23 ENSMUST00000130681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030555 Ttc23 ENSMUST00000155024 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000092518 Garin5b ENSMUST00000163574 ENSMUSP00000137684 TRANSLATION nonsense_mediated_decay - - 1 127.0 0.0 0.9 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000092518 Garin5b ENSMUST00000174409 ENSMUSP00000133885 TRANSLATION protein_coding - CCDS57474.1 5 754.0 0.0 1.6 0.0 67.4 0.0 -4,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000060538 Tmem219 ENSMUST00000137875 - NO_TRANSLATION retained_intron ENSMUSG00000060538 Tmem219 ENSMUST00000121532 ENSMUSP00000112485 TRANSLATION protein_coding - CCDS40133.1 1 240.0 0.0 0.0 11.3 68.5 4.0 -2,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000060538 Tmem219 ENSMUST00000134134 ENSMUSP00000116806 TRANSLATION protein_coding stop - 2 221.0 0.0 0.0 0.0 68.5 2.0 -4,-2 0.037 3 -2.0 MINOR ENSMUSG00000060538 Tmem219 ENSMUST00000119781 ENSMUSP00000114040 TRANSLATION protein_coding - - 5 265.0 0.0 0.0 0.1 68.5 4.0 -4,-2 0.0843 3 6.0 MINOR ENSMUSG00000060538 Tmem219 ENSMUST00000121612 ENSMUSP00000113260 TRANSLATION protein_coding stop - 3 136.0 0.0 0.0 0.0 29.9 0.0 -4,-7 0.001 2 -2.0 MINOR ENSMUSG00000060538 Tmem219 ENSMUST00000032926 ENSMUSP00000032926 TRANSLATION protein_coding - CCDS40133.1 1 240.0 0.0 0.0 11.3 68.5 4.0 -2,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000060538 Tmem219 ENSMUST00000145307 - NO_TRANSLATION retained_intron ENSMUSG00000060538 Tmem219 ENSMUST00000120007 ENSMUSP00000113647 TRANSLATION protein_coding - - 1 272.0 0.0 0.0 2.2 68.5 4.0 -4,-7 0.1773 3 6.351 MINOR ENSMUSG00000060538 Tmem219 ENSMUST00000177004 ENSMUSP00000135259 TRANSLATION protein_coding start - 3 150.0 0.0 0.0 0.0 29.9 0.0 -4,-7 0.0014 2 -2.0 MINOR ENSMUSG00000060538 Tmem219 ENSMUST00000154174 ENSMUSP00000115017 TRANSLATION protein_coding start - 3 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066772 Obox3 ENSMUST00000095217 ENSMUSP00000092842 TRANSLATION protein_coding - CCDS20838.1 1 335.0 0.0 1.9 0.0 58.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066772 Obox3 ENSMUST00000174151 ENSMUSP00000133814 TRANSLATION protein_coding stop - 1 192.0 0.0 1.9 0.0 58.4 0.0 -4,-5 0.0178 - -2.0 MINOR ENSMUSG00000066772 Obox3 ENSMUST00000174443 ENSMUSP00000134531 TRANSLATION protein_coding - CCDS20838.1 2 335.0 0.0 1.9 0.0 58.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066772 Obox3 ENSMUST00000182148 - NO_TRANSLATION retained_intron ENSMUSG00000066772 Obox3 ENSMUST00000173912 ENSMUSP00000133427 TRANSLATION protein_coding - CCDS20838.1 5 335.0 0.0 1.9 0.0 58.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066772 Obox3 ENSMUST00000174842 ENSMUSP00000134526 TRANSLATION protein_coding stop - 3 151.0 0.0 1.5 0.0 58.4 0.0 -4,-5 0.0174 - -2.0 MINOR ENSMUSG00000066772 Obox3 ENSMUST00000173395 ENSMUSP00000133788 TRANSLATION protein_coding stop - 5 213.0 0.0 1.9 0.0 58.4 0.0 -4,-5 0.0196 - -2.0 MINOR ENSMUSG00000070371 Prss36 ENSMUST00000141385 ENSMUSP00000120544 TRANSLATION protein_coding stop - 5 152.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000070371 Prss36 ENSMUST00000094026 ENSMUSP00000091565 TRANSLATION protein_coding - - 5 863.0 5.0 4.55 0.0 334.6 0.0 -1,-3 0.17 - 13.0 ALTERNATIVE:2 ENSMUSG00000070371 Prss36 ENSMUST00000118755 ENSMUSP00000112659 TRANSLATION protein_coding - CCDS52410.2 5 852.0 5.0 4.55 0.0 338.4 0.0 -1,-3 1.0 - 13.0 PRINCIPAL:2 ENSMUSG00000070371 Prss36 ENSMUST00000150591 - NO_TRANSLATION retained_intron ENSMUSG00000070371 Prss36 ENSMUST00000156152 ENSMUSP00000121706 TRANSLATION protein_coding - - 5 351.0 0.0 1.65 0.0 70.7 0.0 -4,-5 0.0 - 0.198 MINOR ENSMUSG00000070371 Prss36 ENSMUST00000144192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070371 Prss36 ENSMUST00000153110 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070371 Prss36 ENSMUST00000152697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070709 Zfp974 ENSMUST00000145674 - NO_TRANSLATION retained_intron ENSMUSG00000070709 Zfp974 ENSMUST00000137668 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070709 Zfp974 ENSMUST00000152330 - NO_TRANSLATION retained_intron ENSMUSG00000070709 Zfp974 ENSMUST00000138583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070709 Zfp974 ENSMUST00000098639 ENSMUSP00000096238 TRANSLATION protein_coding - CCDS21032.1 1 752.0 87.0 1.1 0.0 367.0 0.0 -4,-5 0.9983 - 15.222 PRINCIPAL:1 ENSMUSG00000070709 Zfp974 ENSMUST00000129341 ENSMUSP00000115940 TRANSLATION protein_coding stop - 1 175.0 0.0 2.05 0.0 84.0 0.0 -4,-5 0.0477 - -2.0 MINOR ENSMUSG00000031029 Eif3f ENSMUST00000153596 - NO_TRANSLATION retained_intron ENSMUSG00000031029 Eif3f ENSMUST00000147369 - NO_TRANSLATION retained_intron ENSMUSG00000031029 Eif3f ENSMUST00000033342 ENSMUSP00000033342 TRANSLATION protein_coding - CCDS21731.1 1 361.0 0.0 6.75 0.0 179.4 0.0 -2,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000043855 Or10ab4 ENSMUST00000063151 ENSMUSP00000056631 TRANSLATION protein_coding - CCDS21701.1 - 327.0 0.0 1.0 0.4 151.9 7.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043855 Or10ab4 ENSMUST00000209805 ENSMUSP00000147905 TRANSLATION protein_coding - CCDS21701.1 5 327.0 0.0 1.0 0.4 151.9 7.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043855 Or10ab4 ENSMUST00000214599 ENSMUSP00000149060 TRANSLATION protein_coding - CCDS21701.1 5 327.0 0.0 1.0 0.4 151.9 7.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000011267 Zfp296 ENSMUST00000208314 - NO_TRANSLATION retained_intron ENSMUSG00000011267 Zfp296 ENSMUST00000108453 ENSMUSP00000104093 TRANSLATION protein_coding - CCDS52060.1 1 445.0 16.0 0.64 0.1 66.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000038201 Kcna7 ENSMUST00000107774 ENSMUSP00000103403 TRANSLATION protein_coding - CCDS39951.1 1 489.0 0.0 2.0 0.1 264.4 0.0 -4,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000066240 Or10a49 ENSMUST00000216500 ENSMUSP00000150980 TRANSLATION protein_coding - CCDS52357.1 5 314.0 0.0 1.0 12.5 201.1 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066240 Or10a49 ENSMUST00000084753 ENSMUSP00000081805 TRANSLATION protein_coding - CCDS52357.1 - 314.0 0.0 1.0 12.5 201.1 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094606 Vmn2r50 ENSMUST00000074943 ENSMUSP00000074476 TRANSLATION protein_coding - CCDS57492.1 5 861.0 4.0 2.35 0.0 388.1 7.0 1,-4 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000094606 Vmn2r50 ENSMUST00000086298 ENSMUSP00000083478 TRANSLATION protein_coding - - 1 845.0 4.0 2.2 0.0 389.8 7.0 1,-4 0.3147 - 11.616 ALTERNATIVE:2 ENSMUSG00000067616 Klk11 ENSMUST00000171458 ENSMUSP00000132721 TRANSLATION protein_coding - CCDS39935.1 2 249.0 19.0 3.8 7.4 231.8 0.0 1,-2 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000067616 Klk11 ENSMUST00000205566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067616 Klk11 ENSMUST00000080211 ENSMUSP00000079101 TRANSLATION protein_coding - CCDS52227.1 1 276.0 19.0 3.8 1.7 231.8 0.0 -4,-2 0.4471 2 18.218 MINOR ENSMUSG00000067616 Klk11 ENSMUST00000205415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067616 Klk11 ENSMUST00000206165 - NO_TRANSLATION retained_intron ENSMUSG00000038260 Trpm4 ENSMUST00000209239 - NO_TRANSLATION retained_intron ENSMUSG00000038260 Trpm4 ENSMUST00000210639 - NO_TRANSLATION retained_intron ENSMUSG00000038260 Trpm4 ENSMUST00000211431 ENSMUSP00000147620 TRANSLATION nonsense_mediated_decay - - 2 97.0 0.0 0.36 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038260 Trpm4 ENSMUST00000210541 ENSMUSP00000147635 TRANSLATION nonsense_mediated_decay - - 3 85.0 0.0 0.36 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038260 Trpm4 ENSMUST00000042194 ENSMUSP00000040367 TRANSLATION protein_coding - CCDS52245.1 1 1213.0 0.0 19.748 0.0 46.1 6.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000038260 Trpm4 ENSMUST00000211743 ENSMUSP00000147793 TRANSLATION protein_coding - - 1 1066.0 0.0 17.578 0.0 46.1 6.0 -3,-1 0.1947 12 7.662 MINOR ENSMUSG00000038260 Trpm4 ENSMUST00000209506 ENSMUSP00000147999 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000038260 Trpm4 ENSMUST00000211411 - NO_TRANSLATION retained_intron ENSMUSG00000038260 Trpm4 ENSMUST00000210311 ENSMUSP00000148245 TRANSLATION protein_coding start - 3 128.0 0.0 2.73 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000014402 Tsg101 ENSMUST00000140693 - NO_TRANSLATION retained_intron ENSMUSG00000014402 Tsg101 ENSMUST00000146130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014402 Tsg101 ENSMUST00000143413 ENSMUSP00000121314 TRANSLATION protein_coding stop - 5 139.0 0.0 3.63 0.0 108.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000014402 Tsg101 ENSMUST00000211595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014402 Tsg101 ENSMUST00000156335 ENSMUSP00000120856 TRANSLATION protein_coding stop - 5 145.0 0.0 2.23 0.0 48.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000014402 Tsg101 ENSMUST00000209538 ENSMUSP00000147748 TRANSLATION protein_coding start - 3 253.0 0.0 4.98 0.0 159.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000014402 Tsg101 ENSMUST00000014546 ENSMUSP00000014546 TRANSLATION protein_coding - CCDS21291.1 1 391.0 0.0 7.73 32.1 254.6 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000014402 Tsg101 ENSMUST00000211076 ENSMUSP00000147701 TRANSLATION nonsense_mediated_decay - - 3 66.0 0.0 2.0 0.0 38.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000014402 Tsg101 ENSMUST00000210664 ENSMUSP00000147749 TRANSLATION protein_coding stop - 3 148.0 0.0 3.3 0.0 80.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000053395 Cacng8 ENSMUST00000203617 ENSMUSP00000145502 TRANSLATION protein_coding start - - 54.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053395 Cacng8 ENSMUST00000092351 ENSMUSP00000090005 TRANSLATION protein_coding start CCDS57471.1 1 423.0 0.0 3.23 1.1 131.2 2.0 -4,-7 1.0 7 -2.0 MINOR ENSMUSG00000053395 Cacng8 ENSMUST00000182222 ENSMUSP00000138618 TRANSLATION protein_coding - CCDS57471.1 5 423.0 0.0 3.23 1.1 131.2 2.0 -4,-7 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000036989 Trim3 ENSMUST00000106789 ENSMUSP00000102401 TRANSLATION protein_coding - CCDS21655.1 1 744.0 16.0 8.55 18.6 319.3 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000036989 Trim3 ENSMUST00000106791 ENSMUSP00000102403 TRANSLATION protein_coding - CCDS72012.1 1 717.0 16.0 7.55 0.0 288.2 0.0 -4,-5 0.1049 25 14.136 MINOR ENSMUSG00000036989 Trim3 ENSMUST00000150363 - NO_TRANSLATION retained_intron ENSMUSG00000036989 Trim3 ENSMUST00000153371 ENSMUSP00000119910 TRANSLATION protein_coding stop - 5 287.0 16.0 2.598 0.0 68.7 0.0 -4,-5 0.0001 9 -2.0 MINOR ENSMUSG00000036989 Trim3 ENSMUST00000154218 - NO_TRANSLATION retained_intron ENSMUSG00000036989 Trim3 ENSMUST00000156581 - NO_TRANSLATION retained_intron ENSMUSG00000036989 Trim3 ENSMUST00000140882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036989 Trim3 ENSMUST00000057525 ENSMUSP00000053384 TRANSLATION protein_coding - CCDS21655.1 1 744.0 16.0 8.55 18.6 319.3 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000036989 Trim3 ENSMUST00000147044 ENSMUSP00000114822 TRANSLATION protein_coding - CCDS21655.1 1 744.0 16.0 8.55 18.6 319.3 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000015149 Sirt2 ENSMUST00000072965 ENSMUSP00000072732 TRANSLATION protein_coding - CCDS21055.1 1 389.0 26.0 9.616 11.0 196.4 0.0 -4,-5 1.0 19 17.0 PRINCIPAL:4 ENSMUSG00000015149 Sirt2 ENSMUST00000170068 ENSMUSP00000132783 TRANSLATION protein_coding - CCDS52165.1 5 319.0 26.0 8.416 1.7 196.4 0.0 -3,-5 0.15 17 11.81 MINOR ENSMUSG00000015149 Sirt2 ENSMUST00000122915 ENSMUSP00000147217 TRANSLATION protein_coding - CCDS85253.1 1 352.0 26.0 9.35 0.0 196.4 0.0 -4,-5 0.0538 19 13.466 MINOR ENSMUSG00000015149 Sirt2 ENSMUST00000132789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015149 Sirt2 ENSMUST00000128961 - NO_TRANSLATION retained_intron ENSMUSG00000015149 Sirt2 ENSMUST00000141077 - NO_TRANSLATION retained_intron ENSMUSG00000015149 Sirt2 ENSMUST00000155327 ENSMUSP00000146462 TRANSLATION protein_coding - - 5 351.0 26.0 9.35 10.1 196.4 0.0 -4,-5 0.8529 19 16.196 ALTERNATIVE:1 ENSMUSG00000015149 Sirt2 ENSMUST00000153956 - NO_TRANSLATION retained_intron ENSMUSG00000015149 Sirt2 ENSMUST00000207322 - NO_TRANSLATION retained_intron ENSMUSG00000015149 Sirt2 ENSMUST00000127953 - NO_TRANSLATION retained_intron ENSMUSG00000039099 Wdr93 ENSMUST00000035622 ENSMUSP00000037467 TRANSLATION protein_coding - CCDS39992.1 1 695.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.9105 - 0.0 PRINCIPAL:1 ENSMUSG00000096584 Or51aa5 ENSMUST00000216074 ENSMUSP00000149114 TRANSLATION protein_coding - CCDS40055.1 5 323.0 0.0 1.0 4.8 365.6 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096584 Or51aa5 ENSMUST00000078108 ENSMUSP00000077246 TRANSLATION protein_coding - CCDS40055.1 - 323.0 0.0 1.0 4.8 365.6 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035429 Ptprh ENSMUST00000166650 ENSMUSP00000125833 TRANSLATION protein_coding - CCDS51974.1 5 971.0 11.0 6.55 0.1 446.8 1.0 3,-4 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000035429 Ptprh ENSMUST00000205341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035429 Ptprh ENSMUST00000049113 ENSMUSP00000042396 TRANSLATION protein_coding - CCDS51974.1 1 971.0 11.0 6.55 0.1 446.8 1.0 3,-4 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000035429 Ptprh ENSMUST00000206999 ENSMUSP00000145543 TRANSLATION nonsense_mediated_decay - CCDS51974.1 1 971.0 11.0 6.55 0.1 446.8 1.0 3,-4 1.0 10 -2.0 MINOR ENSMUSG00000035429 Ptprh ENSMUST00000205417 - NO_TRANSLATION retained_intron ENSMUSG00000048469 Or51f23 ENSMUST00000061096 ENSMUSP00000129376 TRANSLATION protein_coding - CCDS52334.1 - 316.0 0.0 1.0 10.6 387.2 0.0 -2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000099581 Scgb1b10 ENSMUST00000187257 ENSMUSP00000139939 TRANSLATION protein_coding - - 5 93.0 0.0 1.63 0.0 73.8 0.0 3,-2 0.8196 - 12.0 PRINCIPAL:1 ENSMUSG00000030471 Zdhhc13 ENSMUST00000139125 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030471 Zdhhc13 ENSMUST00000118927 ENSMUSP00000112498 TRANSLATION protein_coding - CCDS52259.1 1 622.0 3.0 14.15 11.8 211.7 5.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000030471 Zdhhc13 ENSMUST00000125280 ENSMUSP00000123603 TRANSLATION protein_coding stop - 1 442.0 3.0 11.0 0.0 161.0 5.0 -4,-7 0.0054 4 -2.0 MINOR ENSMUSG00000011632 Pinlyp ENSMUST00000011776 ENSMUSP00000011776 TRANSLATION protein_coding - CCDS20954.1 1 212.0 0.0 4.0 0.1 45.2 0.0 1,-4 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000070796 Psg21 ENSMUST00000094793 ENSMUSP00000092387 TRANSLATION protein_coding - CCDS20875.1 1 471.0 0.0 3.2 0.4 153.4 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000070796 Psg21 ENSMUST00000182128 ENSMUSP00000138173 TRANSLATION protein_coding - - 1 379.0 0.0 2.2 0.0 114.3 0.0 0,-3 0.0012 - 7.656 MINOR ENSMUSG00000070796 Psg21 ENSMUST00000182228 - NO_TRANSLATION retained_intron ENSMUSG00000070796 Psg21 ENSMUST00000182933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015133 Lrrk1 ENSMUST00000145954 ENSMUSP00000114938 TRANSLATION nonsense_mediated_decay start - 1 508.0 20.0 2.466 0.0 138.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000015133 Lrrk1 ENSMUST00000167705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015133 Lrrk1 ENSMUST00000154893 - NO_TRANSLATION retained_intron ENSMUSG00000015133 Lrrk1 ENSMUST00000015277 ENSMUSP00000015277 TRANSLATION protein_coding - CCDS21344.1 1 2014.0 20.0 7.948 9.0 281.6 0.0 -4,-6 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000015133 Lrrk1 ENSMUST00000131239 - NO_TRANSLATION retained_intron ENSMUSG00000015133 Lrrk1 ENSMUST00000130438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015133 Lrrk1 ENSMUST00000137181 - NO_TRANSLATION retained_intron ENSMUSG00000030981 Mmp21 ENSMUST00000122136 ENSMUSP00000113853 TRANSLATION protein_coding - CCDS85442.1 1 415.0 17.0 1.264 0.0 201.4 0.0 1,-2 0.0337 - 12.09 MINOR ENSMUSG00000030981 Mmp21 ENSMUST00000033278 ENSMUSP00000033278 TRANSLATION protein_coding - CCDS21933.1 1 568.0 19.0 1.462 2.1 264.2 0.0 1,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000030981 Mmp21 ENSMUST00000131894 - NO_TRANSLATION retained_intron ENSMUSG00000001802 Lrp3 ENSMUST00000155404 - NO_TRANSLATION retained_intron ENSMUSG00000001802 Lrp3 ENSMUST00000118444 ENSMUSP00000113406 TRANSLATION protein_coding - - 5 769.0 27.0 1.22 6.9 190.5 2.0 -2,-5 1.0 2 14.818 PRINCIPAL:2 ENSMUSG00000001802 Lrp3 ENSMUST00000153163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001802 Lrp3 ENSMUST00000122409 ENSMUSP00000114026 TRANSLATION protein_coding - CCDS52202.1 1 790.0 27.0 1.52 0.0 190.5 2.0 -1,-4 0.3919 2 14.0 ALTERNATIVE:2 ENSMUSG00000116179 Or5ae1 ENSMUST00000073468 ENSMUSP00000073172 TRANSLATION protein_coding - CCDS21421.1 - 315.0 0.0 1.0 5.4 178.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094053 Scgb2b7 ENSMUST00000178258 ENSMUSP00000136731 TRANSLATION protein_coding - CCDS57536.1 1 112.0 0.0 2.3 0.1 99.7 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094053 Scgb2b7 ENSMUST00000188968 - NO_TRANSLATION retained_intron ENSMUSG00000050063 Klk6 ENSMUST00000107966 ENSMUSP00000103600 TRANSLATION protein_coding - CCDS21184.2 1 253.0 13.0 4.75 0.1 245.9 0.0 4,-1 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000050063 Klk6 ENSMUST00000107968 ENSMUSP00000103602 TRANSLATION protein_coding - CCDS21184.2 1 253.0 13.0 4.75 0.1 245.9 0.0 4,-1 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000050063 Klk6 ENSMUST00000107967 ENSMUSP00000103601 TRANSLATION protein_coding - CCDS21184.2 1 253.0 13.0 4.75 0.1 245.9 0.0 4,-1 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000050063 Klk6 ENSMUST00000177514 ENSMUSP00000135591 TRANSLATION protein_coding stop - 5 129.0 10.0 2.0 0.0 109.6 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000002608 Ccdc97 ENSMUST00000154143 - NO_TRANSLATION retained_intron ENSMUSG00000002608 Ccdc97 ENSMUST00000134201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002608 Ccdc97 ENSMUST00000129429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002608 Ccdc97 ENSMUST00000125699 ENSMUSP00000145855 TRANSLATION protein_coding stop - 5 168.0 0.0 0.0 0.0 72.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000002608 Ccdc97 ENSMUST00000129519 - NO_TRANSLATION retained_intron ENSMUSG00000002608 Ccdc97 ENSMUST00000137046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002608 Ccdc97 ENSMUST00000140847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002608 Ccdc97 ENSMUST00000156365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002608 Ccdc97 ENSMUST00000002683 ENSMUSP00000002683 TRANSLATION protein_coding - CCDS20994.1 1 340.0 0.0 0.0 0.4 160.0 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000038695 Josd2 ENSMUST00000118493 ENSMUSP00000113226 TRANSLATION protein_coding - CCDS21208.1 5 188.0 0.0 4.25 7.5 88.1 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038695 Josd2 ENSMUST00000132952 - NO_TRANSLATION retained_intron ENSMUSG00000038695 Josd2 ENSMUST00000118628 ENSMUSP00000113172 TRANSLATION protein_coding - CCDS21208.1 2 188.0 0.0 4.25 7.5 88.1 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038695 Josd2 ENSMUST00000133656 - NO_TRANSLATION retained_intron ENSMUSG00000038695 Josd2 ENSMUST00000035844 ENSMUSP00000048415 TRANSLATION protein_coding - CCDS21208.1 1 188.0 0.0 4.25 7.5 88.1 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038695 Josd2 ENSMUST00000136609 ENSMUSP00000123205 TRANSLATION nonsense_mediated_decay - - 3 97.0 0.0 2.316 0.0 42.1 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000038695 Josd2 ENSMUST00000136679 ENSMUSP00000114900 TRANSLATION nonsense_mediated_decay - - 5 67.0 0.0 1.0 0.0 31.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038695 Josd2 ENSMUST00000206887 ENSMUSP00000145582 TRANSLATION protein_coding - - 5 123.0 0.0 3.25 0.0 41.8 0.0 -4,-6 0.0 - 6.846 MINOR ENSMUSG00000038695 Josd2 ENSMUST00000131817 - NO_TRANSLATION retained_intron ENSMUSG00000038695 Josd2 ENSMUST00000120852 ENSMUSP00000114105 TRANSLATION protein_coding - CCDS21208.1 3 188.0 0.0 4.25 7.5 88.1 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038695 Josd2 ENSMUST00000155659 - NO_TRANSLATION retained_intron ENSMUSG00000038695 Josd2 ENSMUST00000208117 ENSMUSP00000146846 TRANSLATION protein_coding stop - 3 67.0 0.0 1.5 0.0 33.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038695 Josd2 ENSMUST00000130220 - NO_TRANSLATION retained_intron ENSMUSG00000038695 Josd2 ENSMUST00000139097 ENSMUSP00000147171 TRANSLATION nonsense_mediated_decay start - 3 97.0 0.0 2.316 0.0 42.1 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000038695 Josd2 ENSMUST00000121922 ENSMUSP00000112796 TRANSLATION protein_coding - - 5 146.0 0.0 3.0 2.7 67.7 0.0 -4,-7 0.0731 - 8.63 MINOR ENSMUSG00000038695 Josd2 ENSMUST00000117324 ENSMUSP00000113313 TRANSLATION protein_coding - CCDS21208.1 1 188.0 0.0 4.25 7.5 88.1 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038695 Josd2 ENSMUST00000134398 ENSMUSP00000145857 TRANSLATION protein_coding - - 5 81.0 0.0 2.0 0.0 30.3 0.0 -4,-7 0.0 - 3.564 MINOR ENSMUSG00000038695 Josd2 ENSMUST00000149341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038695 Josd2 ENSMUST00000206210 - NO_TRANSLATION retained_intron ENSMUSG00000025105 Bnc1 ENSMUST00000026096 ENSMUSP00000026096 TRANSLATION protein_coding - CCDS52285.1 1 990.0 16.0 0.6 0.4 51.5 0.0 -4,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000006948 Klk4 ENSMUST00000007161 ENSMUSP00000007161 TRANSLATION protein_coding - CCDS21186.1 1 255.0 6.0 4.0 6.1 205.6 0.0 4,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000038886 Man2a2 ENSMUST00000206066 - NO_TRANSLATION retained_intron ENSMUSG00000038886 Man2a2 ENSMUST00000206212 ENSMUSP00000145820 TRANSLATION protein_coding stop - 5 29.0 0.0 0.0 0.0 0.0 1.0 -3,-5 0.0007 - -2.0 MINOR ENSMUSG00000038886 Man2a2 ENSMUST00000205853 ENSMUSP00000145916 TRANSLATION nonsense_mediated_decay start - 3 69.0 1.0 0.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038886 Man2a2 ENSMUST00000205318 - NO_TRANSLATION retained_intron ENSMUSG00000038886 Man2a2 ENSMUST00000206973 - NO_TRANSLATION retained_intron ENSMUSG00000038886 Man2a2 ENSMUST00000205436 ENSMUSP00000145688 TRANSLATION protein_coding stop - 2 19.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0051 - -2.0 MINOR ENSMUSG00000038886 Man2a2 ENSMUST00000206301 ENSMUSP00000145861 TRANSLATION nonsense_mediated_decay - - 1 583.0 5.0 7.33 0.0 385.1 1.0 -3,-5 0.0004 7 -2.0 MINOR ENSMUSG00000038886 Man2a2 ENSMUST00000206807 ENSMUSP00000146210 TRANSLATION nonsense_mediated_decay start - 5 67.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000038886 Man2a2 ENSMUST00000098346 ENSMUSP00000095949 TRANSLATION protein_coding - CCDS57556.1 1 1152.0 5.0 17.952 19.0 724.3 1.0 -3,-5 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000038886 Man2a2 ENSMUST00000205535 - NO_TRANSLATION retained_intron ENSMUSG00000038886 Man2a2 ENSMUST00000206917 - NO_TRANSLATION retained_intron ENSMUSG00000095190 Gm10668 ENSMUST00000179491 ENSMUSP00000137013 TRANSLATION protein_coding - - - 301.0 17.0 1.0 0.0 242.6 0.0 -4,-5 0.8085 - 18.0 PRINCIPAL:1 ENSMUSG00000095190 Gm10668 ENSMUST00000191073 ENSMUSP00000140440 TRANSLATION protein_coding - - 1 301.0 17.0 1.0 0.0 242.6 0.0 -4,-5 0.8085 - 18.0 PRINCIPAL:1 ENSMUSG00000003752 Itpkc ENSMUST00000206441 - NO_TRANSLATION retained_intron ENSMUSG00000003752 Itpkc ENSMUST00000003850 ENSMUSP00000003850 TRANSLATION protein_coding - CCDS21015.1 1 678.0 22.0 5.55 0.4 135.1 0.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000003752 Itpkc ENSMUST00000149067 - NO_TRANSLATION retained_intron ENSMUSG00000003752 Itpkc ENSMUST00000147170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061602 Vmn1r78 ENSMUST00000078039 ENSMUSP00000077186 TRANSLATION protein_coding - CCDS20804.1 - 313.0 0.0 0.0 0.4 98.0 5.0 -1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061602 Vmn1r78 ENSMUST00000228664 ENSMUSP00000154797 TRANSLATION protein_coding - CCDS20804.1 - 313.0 0.0 0.0 0.4 98.0 5.0 -1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061602 Vmn1r78 ENSMUST00000228244 ENSMUSP00000154016 TRANSLATION protein_coding - CCDS20804.1 - 313.0 0.0 0.0 0.4 98.0 5.0 -1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000090471 Gm4553 ENSMUST00000168049 ENSMUSP00000131778 TRANSLATION protein_coding start/stop - - 238.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0477 - -2.0 MINOR ENSMUSG00000090471 Gm4553 ENSMUST00000210925 ENSMUSP00000147863 TRANSLATION protein_coding - - - 284.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5999 - 0.0 PRINCIPAL:1 ENSMUSG00000044317 Gpr4 ENSMUST00000060225 ENSMUSP00000061243 TRANSLATION protein_coding - CCDS20893.1 1 365.0 0.0 1.0 1.2 131.3 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000059070 Rpl18 ENSMUST00000209287 ENSMUSP00000147918 TRANSLATION protein_coding - - 3 136.0 0.0 4.16 0.0 231.5 0.0 -4,-2 0.0 5 3.732 MINOR ENSMUSG00000059070 Rpl18 ENSMUST00000211425 - NO_TRANSLATION retained_intron ENSMUSG00000059070 Rpl18 ENSMUST00000211325 - NO_TRANSLATION retained_intron ENSMUSG00000059070 Rpl18 ENSMUST00000209723 - NO_TRANSLATION retained_intron ENSMUSG00000059070 Rpl18 ENSMUST00000211435 ENSMUSP00000147862 TRANSLATION protein_coding stop - 2 126.0 0.0 3.58 0.0 194.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000059070 Rpl18 ENSMUST00000209556 ENSMUSP00000147770 TRANSLATION protein_coding start - 5 80.0 0.0 2.66 0.0 55.8 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000059070 Rpl18 ENSMUST00000210640 ENSMUSP00000147816 TRANSLATION protein_coding - CCDS39958.1 1 188.0 0.0 5.66 23.9 319.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000059070 Rpl18 ENSMUST00000211061 ENSMUSP00000147257 TRANSLATION protein_coding - - 5 159.0 0.0 4.91 1.0 278.9 0.0 -4,0 0.0039 6 8.076 MINOR ENSMUSG00000059070 Rpl18 ENSMUST00000072503 ENSMUSP00000072320 TRANSLATION protein_coding - CCDS39958.1 1 188.0 0.0 5.66 23.9 319.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000059070 Rpl18 ENSMUST00000209693 ENSMUSP00000148055 TRANSLATION protein_coding - - 5 155.0 0.0 4.66 0.0 147.9 0.0 -4,-5 0.0 6 4.002 MINOR ENSMUSG00000059070 Rpl18 ENSMUST00000209867 ENSMUSP00000147725 TRANSLATION protein_coding start - 5 57.0 0.0 1.462 0.0 65.5 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000109497 Or5p67 ENSMUST00000079865 ENSMUSP00000146417 TRANSLATION protein_coding - CCDS85376.1 - 314.0 0.0 1.0 8.9 168.0 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040148 Hmx3 ENSMUST00000046093 ENSMUSP00000039018 TRANSLATION protein_coding - CCDS21917.1 1 356.0 0.0 0.6 7.1 73.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030960 Eef1akmt2 ENSMUST00000154914 - NO_TRANSLATION retained_intron ENSMUSG00000030960 Eef1akmt2 ENSMUST00000135932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030960 Eef1akmt2 ENSMUST00000141920 ENSMUSP00000140277 TRANSLATION nonsense_mediated_decay start - 3 52.0 0.0 1.35 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030960 Eef1akmt2 ENSMUST00000152410 ENSMUSP00000140096 TRANSLATION nonsense_mediated_decay - - 5 104.0 7.0 2.35 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030960 Eef1akmt2 ENSMUST00000120425 ENSMUSP00000113039 TRANSLATION protein_coding - CCDS85439.1 3 119.0 11.0 2.449 0.4 0.0 0.0 -4,-5 0.0062 - 0.666 MINOR ENSMUSG00000030960 Eef1akmt2 ENSMUST00000033257 ENSMUSP00000033257 TRANSLATION protein_coding - CCDS21927.1 1 244.0 19.0 5.93 0.3 65.3 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000040650 Cyp2b23 ENSMUST00000077356 ENSMUSP00000076578 TRANSLATION protein_coding - CCDS39846.1 5 491.0 32.0 8.6 2.4 494.3 0.0 3,-1 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000073907 Or56b35 ENSMUST00000215413 ENSMUSP00000151049 TRANSLATION protein_coding - CCDS21646.1 5 320.0 0.0 1.0 2.2 247.8 4.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000073907 Or56b35 ENSMUST00000098153 ENSMUSP00000095756 TRANSLATION protein_coding - CCDS21646.1 - 320.0 0.0 1.0 2.2 247.8 4.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000035585 Tsen34 ENSMUST00000137204 ENSMUSP00000120403 TRANSLATION protein_coding stop - 2 143.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000035585 Tsen34 ENSMUST00000108629 ENSMUSP00000104269 TRANSLATION protein_coding - CCDS51966.1 1 287.0 0.0 1.24 0.0 30.6 0.0 -4,-6 0.0162 8 3.834 MINOR ENSMUSG00000035585 Tsen34 ENSMUST00000147288 ENSMUSP00000145563 TRANSLATION protein_coding start/stop - 5 109.0 0.0 0.9 0.0 44.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000035585 Tsen34 ENSMUST00000123088 ENSMUSP00000123614 TRANSLATION protein_coding stop - 2 150.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000035585 Tsen34 ENSMUST00000205734 ENSMUSP00000145687 TRANSLATION protein_coding stop - 3 85.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000035585 Tsen34 ENSMUST00000038521 ENSMUSP00000046911 TRANSLATION protein_coding - - 5 312.0 0.0 1.94 8.0 74.6 0.0 -4,-6 0.9023 9 11.0 ALTERNATIVE:1 ENSMUSG00000035585 Tsen34 ENSMUST00000205287 ENSMUSP00000145965 TRANSLATION protein_coding - - 5 295.0 0.0 0.6 0.0 32.5 0.0 -4,-6 0.0025 7 1.854 MINOR ENSMUSG00000035585 Tsen34 ENSMUST00000142713 ENSMUSP00000118440 TRANSLATION protein_coding stop - 2 158.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000035585 Tsen34 ENSMUST00000108627 ENSMUSP00000104267 TRANSLATION protein_coding - CCDS20725.1 1 316.0 0.0 1.94 7.3 74.6 0.0 -4,-6 1.0 9 10.7 PRINCIPAL:4 ENSMUSG00000035585 Tsen34 ENSMUST00000155060 ENSMUSP00000118816 TRANSLATION nonsense_mediated_decay - - 3 167.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000035585 Tsen34 ENSMUST00000108630 ENSMUSP00000104270 TRANSLATION protein_coding - CCDS20725.1 1 316.0 0.0 1.94 7.3 74.6 0.0 -4,-6 1.0 9 10.7 PRINCIPAL:4 ENSMUSG00000035585 Tsen34 ENSMUST00000139396 - NO_TRANSLATION retained_intron ENSMUSG00000063651 Cnfn ENSMUST00000076276 ENSMUSP00000075625 TRANSLATION protein_coding - CCDS39838.1 1 111.0 0.0 2.55 11.7 60.8 0.0 -4,-6 1.0 1 11.0 PRINCIPAL:4 ENSMUSG00000063651 Cnfn ENSMUST00000167591 ENSMUSP00000130957 TRANSLATION protein_coding - CCDS52149.1 1 124.0 0.0 2.55 9.8 60.8 0.0 -4,-5 0.8789 1 10.466 ALTERNATIVE:1 ENSMUSG00000050281 Or51l4 ENSMUST00000217072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050281 Or51l4 ENSMUST00000106880 ENSMUSP00000102493 TRANSLATION protein_coding - CCDS21589.1 5 319.0 0.0 1.0 7.5 399.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095683 Gm10662 ENSMUST00000186928 ENSMUSP00000140018 TRANSLATION protein_coding - CCDS52126.1 1 313.0 17.0 1.0 0.0 236.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095683 Gm10662 ENSMUST00000168053 ENSMUSP00000129981 TRANSLATION protein_coding - CCDS52126.1 - 313.0 17.0 1.0 0.0 236.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000006649 Nphs1 ENSMUST00000006825 ENSMUSP00000006825 TRANSLATION protein_coding - CCDS39884.1 1 1256.0 0.0 15.172 2.3 324.5 1.0 1,-3 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000006649 Nphs1 ENSMUST00000149086 ENSMUSP00000119601 TRANSLATION nonsense_mediated_decay start - 5 72.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006649 Nphs1 ENSMUST00000126297 ENSMUSP00000116500 TRANSLATION protein_coding - - 1 1242.0 0.0 15.172 1.1 324.5 1.0 -4,-7 0.4065 - 8.077 ALTERNATIVE:2 ENSMUSG00000006649 Nphs1 ENSMUST00000123880 - NO_TRANSLATION retained_intron ENSMUSG00000006649 Nphs1 ENSMUST00000131004 - NO_TRANSLATION retained_intron ENSMUSG00000023118 Sympk ENSMUST00000146903 ENSMUSP00000138740 TRANSLATION nonsense_mediated_decay - - 1 234.0 5.0 5.15 0.0 86.5 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000023118 Sympk ENSMUST00000137287 - NO_TRANSLATION retained_intron ENSMUSG00000023118 Sympk ENSMUST00000138440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023118 Sympk ENSMUST00000153976 ENSMUSP00000121540 TRANSLATION protein_coding stop - 5 198.0 5.0 4.4 0.0 59.1 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000023118 Sympk ENSMUST00000023882 ENSMUSP00000023882 TRANSLATION protein_coding - CCDS52051.1 1 1288.0 5.0 7.15 0.1 443.0 0.0 -4,-7 1.0 27 17.0 PRINCIPAL:1 ENSMUSG00000023118 Sympk ENSMUST00000131230 - NO_TRANSLATION retained_intron ENSMUSG00000023118 Sympk ENSMUST00000130328 ENSMUSP00000115900 TRANSLATION protein_coding start - 3 143.0 0.0 0.0 0.0 139.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000023118 Sympk ENSMUST00000148861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066306 Numa1 ENSMUST00000084852 ENSMUSP00000081912 TRANSLATION protein_coding - CCDS40046.1 1 2094.0 0.0 9.88 0.3 0.0 0.0 0,-5 1.0 77 6.0 PRINCIPAL:1 ENSMUSG00000066306 Numa1 ENSMUST00000211272 ENSMUSP00000148187 TRANSLATION protein_coding stop - 5 207.0 0.0 4.5 0.0 0.0 0.0 0,-5 0.0477 3 -2.0 MINOR ENSMUSG00000066306 Numa1 ENSMUST00000209639 ENSMUSP00000148215 TRANSLATION protein_coding stop - 1 875.0 0.0 7.98 0.0 0.0 0.0 0,-5 0.0847 38 -2.0 MINOR ENSMUSG00000066306 Numa1 ENSMUST00000163183 ENSMUSP00000126180 TRANSLATION protein_coding start - 1 741.0 0.0 1.9 0.0 0.0 0.0 -4,-5 0.0482 23 -2.0 MINOR ENSMUSG00000066306 Numa1 ENSMUST00000210475 ENSMUSP00000148098 TRANSLATION protein_coding stop - 1 1082.0 0.0 7.98 0.0 0.0 0.0 0,-5 0.1581 45 -2.0 MINOR ENSMUSG00000066306 Numa1 ENSMUST00000210679 ENSMUSP00000147935 TRANSLATION protein_coding stop - 3 218.0 0.0 3.75 0.0 0.0 0.0 0,-5 0.0489 4 -2.0 MINOR ENSMUSG00000066306 Numa1 ENSMUST00000210353 - NO_TRANSLATION retained_intron ENSMUSG00000066306 Numa1 ENSMUST00000209583 - NO_TRANSLATION retained_intron ENSMUSG00000039176 Polg ENSMUST00000139668 ENSMUSP00000114414 TRANSLATION protein_coding start/stop - 5 236.0 0.0 4.93 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039176 Polg ENSMUST00000149444 ENSMUSP00000119616 TRANSLATION nonsense_mediated_decay - - 1 498.0 3.0 6.88 0.0 0.0 0.0 -4,-1 0.0005 3 -2.0 MINOR ENSMUSG00000039176 Polg ENSMUST00000127734 - NO_TRANSLATION retained_intron ENSMUSG00000039176 Polg ENSMUST00000201662 ENSMUSP00000144510 TRANSLATION protein_coding start - 3 94.0 0.0 2.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039176 Polg ENSMUST00000073889 ENSMUSP00000073551 TRANSLATION protein_coding - CCDS21382.1 1 1217.0 3.0 24.14 2.5 201.0 0.0 -4,-1 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000039176 Polg ENSMUST00000201557 - NO_TRANSLATION retained_intron ENSMUSG00000039176 Polg ENSMUST00000142915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039176 Polg ENSMUST00000125562 ENSMUSP00000143813 TRANSLATION protein_coding stop - 3 105.0 0.0 0.8 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000039176 Polg ENSMUST00000139795 - NO_TRANSLATION retained_intron ENSMUSG00000039176 Polg ENSMUST00000139290 ENSMUSP00000144035 TRANSLATION protein_coding start - 3 69.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039176 Polg ENSMUST00000145154 - NO_TRANSLATION retained_intron ENSMUSG00000039176 Polg ENSMUST00000139597 - NO_TRANSLATION retained_intron ENSMUSG00000039176 Polg ENSMUST00000143672 ENSMUSP00000122286 TRANSLATION protein_coding start/stop - 3 243.0 0.0 3.85 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039176 Polg ENSMUST00000201907 ENSMUSP00000144084 TRANSLATION protein_coding start/stop - 1 49.0 0.0 1.75 0.0 0.0 0.0 -3,-5 0.0003 1 -2.0 MINOR ENSMUSG00000039176 Polg ENSMUST00000201030 ENSMUSP00000143923 TRANSLATION protein_coding start/stop - 3 155.0 0.0 4.83 0.0 77.2 0.0 -4,-7 0.0004 4 -2.0 MINOR ENSMUSG00000039176 Polg ENSMUST00000132048 ENSMUSP00000143933 TRANSLATION nonsense_mediated_decay - - 5 261.0 2.0 1.8 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000039176 Polg ENSMUST00000154403 - NO_TRANSLATION retained_intron ENSMUSG00000039176 Polg ENSMUST00000127082 - NO_TRANSLATION retained_intron ENSMUSG00000047371 Zfp768 ENSMUST00000205266 ENSMUSP00000145704 TRANSLATION protein_coding - - 5 565.0 40.0 0.8 0.1 266.0 0.0 -4,-5 0.3264 5 14.0 ALTERNATIVE:2 ENSMUSG00000047371 Zfp768 ENSMUST00000060783 ENSMUSP00000055374 TRANSLATION protein_coding - CCDS21864.1 1 568.0 40.0 0.8 0.1 266.0 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:2 ENSMUSG00000066242 Or5p5 ENSMUST00000084756 ENSMUSP00000081811 TRANSLATION protein_coding start - - 308.0 0.0 1.0 1.9 175.4 5.0 -4,-5 0.511 - -2.0 MINOR ENSMUSG00000066242 Or5p5 ENSMUST00000214253 ENSMUSP00000149295 TRANSLATION protein_coding - CCDS85374.1 5 306.0 0.0 1.0 1.9 175.4 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000066242 Or5p5 ENSMUST00000208563 ENSMUSP00000147125 TRANSLATION protein_coding - CCDS85374.1 5 306.0 0.0 1.0 1.9 175.4 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000036634 Mag ENSMUST00000191081 ENSMUSP00000139881 TRANSLATION protein_coding - - 1 627.0 0.0 8.35 10.7 110.0 0.0 2,-2 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000036634 Mag ENSMUST00000187137 ENSMUSP00000139564 TRANSLATION protein_coding - CCDS21115.1 1 582.0 0.0 8.35 5.7 110.0 0.0 2,-2 0.9524 11 13.455 MINOR ENSMUSG00000036634 Mag ENSMUST00000191486 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036634 Mag ENSMUST00000188569 ENSMUSP00000140526 TRANSLATION protein_coding stop - 1 567.0 0.0 7.1 0.0 86.4 0.0 2,-2 0.0087 10 -2.0 MINOR ENSMUSG00000036634 Mag ENSMUST00000190950 ENSMUSP00000139861 TRANSLATION protein_coding stop - 5 64.0 0.0 1.1 0.0 0.0 0.0 2,-2 0.0019 - -2.0 MINOR ENSMUSG00000036634 Mag ENSMUST00000186422 - NO_TRANSLATION retained_intron ENSMUSG00000036634 Mag ENSMUST00000190638 ENSMUSP00000140578 TRANSLATION protein_coding stop - 2 168.0 0.0 3.1 0.0 0.0 0.0 2,-2 0.003 3 -2.0 MINOR ENSMUSG00000036634 Mag ENSMUST00000040548 ENSMUSP00000041464 TRANSLATION protein_coding - CCDS21115.1 1 582.0 0.0 8.35 5.7 110.0 0.0 2,-2 0.9524 11 13.455 MINOR ENSMUSG00000074165 Zfp788 ENSMUST00000140964 ENSMUSP00000116050 TRANSLATION protein_coding stop - 1 300.0 16.0 2.22 0.0 80.5 0.0 -4,-5 0.0019 - -2.0 MINOR ENSMUSG00000074165 Zfp788 ENSMUST00000100275 ENSMUSP00000097847 TRANSLATION protein_coding - CCDS39922.1 1 832.0 92.0 3.22 0.1 447.5 0.0 -4,-5 0.1779 - 11.24 MINOR ENSMUSG00000074165 Zfp788 ENSMUST00000131180 ENSMUSP00000114542 TRANSLATION protein_coding stop - 3 139.0 0.0 2.5 0.0 81.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000074165 Zfp788 ENSMUST00000098508 ENSMUSP00000096108 TRANSLATION protein_coding - - 1 884.0 92.0 4.3 0.0 529.3 0.0 -4,-7 0.8646 - 14.0 PRINCIPAL:2 ENSMUSG00000074165 Zfp788 ENSMUST00000154942 ENSMUSP00000119819 TRANSLATION protein_coding stop - 2 25.0 0.0 0.0 0.0 32.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074165 Zfp788 ENSMUST00000170770 ENSMUSP00000132848 TRANSLATION protein_coding - CCDS39922.1 1 832.0 92.0 3.22 0.1 447.5 0.0 -4,-5 0.1779 - 11.24 MINOR ENSMUSG00000074165 Zfp788 ENSMUST00000045720 ENSMUSP00000035499 TRANSLATION protein_coding - - 1 864.0 92.0 4.3 0.1 529.3 0.0 -4,-5 0.3034 - 14.0 ALTERNATIVE:2 ENSMUSG00000011751 Sptbn4 ENSMUST00000137414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011751 Sptbn4 ENSMUST00000011895 ENSMUSP00000011895 TRANSLATION protein_coding - CCDS21019.1 1 2561.0 4.0 21.33 4.3 937.4 0.0 -4,-5 1.0 63 18.0 PRINCIPAL:1 ENSMUSG00000011751 Sptbn4 ENSMUST00000108363 ENSMUSP00000104000 TRANSLATION protein_coding - CCDS57530.1 1 1241.0 4.0 10.55 1.9 464.1 0.0 -4,-7 0.1391 33 4.546 MINOR ENSMUSG00000011751 Sptbn4 ENSMUST00000108362 ENSMUSP00000103999 TRANSLATION protein_coding - CCDS57530.1 1 1241.0 4.0 10.55 1.9 464.1 0.0 -4,-7 0.1391 33 4.546 MINOR ENSMUSG00000011751 Sptbn4 ENSMUST00000152572 ENSMUSP00000120738 TRANSLATION protein_coding stop - 2 128.0 0.0 1.4 0.0 35.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000011751 Sptbn4 ENSMUST00000108364 ENSMUSP00000104001 TRANSLATION protein_coding - CCDS57530.1 1 1241.0 4.0 10.55 1.9 464.1 0.0 -4,-7 0.1391 33 4.546 MINOR ENSMUSG00000059824 Dbp ENSMUST00000211513 ENSMUSP00000147790 TRANSLATION protein_coding - - 5 188.0 0.0 2.0 0.1 59.7 0.0 -4,-7 0.0804 1 12.0 MINOR ENSMUSG00000059824 Dbp ENSMUST00000080885 ENSMUSP00000079693 TRANSLATION protein_coding - CCDS21260.1 1 325.0 0.0 2.0 8.3 59.7 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000059824 Dbp ENSMUST00000210120 - NO_TRANSLATION retained_intron ENSMUSG00000059824 Dbp ENSMUST00000211357 ENSMUSP00000147355 TRANSLATION protein_coding - - 5 225.0 0.0 2.0 0.1 59.7 0.0 -4,-7 0.0826 1 12.0 MINOR ENSMUSG00000059824 Dbp ENSMUST00000211748 - NO_TRANSLATION retained_intron ENSMUSG00000011658 Fuz ENSMUST00000209163 ENSMUSP00000146977 TRANSLATION protein_coding start/stop - 1 108.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0158 - -2.0 MINOR ENSMUSG00000011658 Fuz ENSMUST00000209039 ENSMUSP00000146681 TRANSLATION protein_coding - - 5 349.0 0.0 0.0 0.1 0.0 0.0 -4,-7 0.0789 - 0.0 MINOR ENSMUSG00000011658 Fuz ENSMUST00000207480 - NO_TRANSLATION retained_intron ENSMUSG00000011658 Fuz ENSMUST00000207485 ENSMUSP00000147169 TRANSLATION protein_coding - - 5 379.0 0.0 0.0 1.0 0.0 0.0 -4,-7 0.1237 - 0.0 MINOR ENSMUSG00000011658 Fuz ENSMUST00000209132 ENSMUSP00000146434 TRANSLATION protein_coding - - 1 169.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0165 - 0.0 MINOR ENSMUSG00000011658 Fuz ENSMUST00000208600 ENSMUSP00000146696 TRANSLATION nonsense_mediated_decay - - 1 192.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0173 - -2.0 MINOR ENSMUSG00000011658 Fuz ENSMUST00000207426 - NO_TRANSLATION retained_intron ENSMUSG00000011658 Fuz ENSMUST00000071207 ENSMUSP00000071194 TRANSLATION protein_coding - CCDS52237.1 1 415.0 0.0 0.0 9.1 0.0 0.0 -4,-7 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000011658 Fuz ENSMUST00000207833 - NO_TRANSLATION retained_intron ENSMUSG00000011658 Fuz ENSMUST00000207939 ENSMUSP00000146820 TRANSLATION protein_coding stop - 5 191.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.013 - -2.0 MINOR ENSMUSG00000011658 Fuz ENSMUST00000208291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011658 Fuz ENSMUST00000208908 ENSMUSP00000146725 TRANSLATION nonsense_mediated_decay start - 5 77.0 0.0 0.0 0.0 0.0 0.0 -3,0 0.0198 - -2.0 MINOR ENSMUSG00000011658 Fuz ENSMUST00000207154 ENSMUSP00000147105 TRANSLATION nonsense_mediated_decay - - 5 94.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0158 - -2.0 MINOR ENSMUSG00000011658 Fuz ENSMUST00000207069 ENSMUSP00000146404 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0158 - -2.0 MINOR ENSMUSG00000011658 Fuz ENSMUST00000208179 ENSMUSP00000146768 TRANSLATION protein_coding - - 5 387.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0388 - 0.0 MINOR ENSMUSG00000040564 Apoc1 ENSMUST00000045035 ENSMUSP00000045571 TRANSLATION protein_coding - CCDS39802.1 1 88.0 0.0 1.46 4.1 104.7 0.0 3,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000040564 Apoc1 ENSMUST00000207978 ENSMUSP00000147008 TRANSLATION protein_coding - - 3 29.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0 - 0.0 MINOR ENSMUSG00000040564 Apoc1 ENSMUST00000207500 - NO_TRANSLATION retained_intron ENSMUSG00000040564 Apoc1 ENSMUST00000108451 ENSMUSP00000104091 TRANSLATION protein_coding - CCDS39802.1 1 88.0 0.0 1.46 4.1 104.7 0.0 3,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000041187 Prkd2 ENSMUST00000205456 - NO_TRANSLATION retained_intron ENSMUSG00000041187 Prkd2 ENSMUST00000205386 - NO_TRANSLATION retained_intron ENSMUSG00000041187 Prkd2 ENSMUST00000168093 ENSMUSP00000131192 TRANSLATION protein_coding - CCDS20855.1 1 875.0 17.0 9.85 7.1 335.4 0.0 -4,-5 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000041187 Prkd2 ENSMUST00000205999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041187 Prkd2 ENSMUST00000205841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041187 Prkd2 ENSMUST00000086104 ENSMUSP00000083273 TRANSLATION protein_coding - CCDS20855.1 1 875.0 17.0 9.85 7.1 335.4 0.0 -4,-5 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000041187 Prkd2 ENSMUST00000205798 - NO_TRANSLATION retained_intron ENSMUSG00000041187 Prkd2 ENSMUST00000206510 - NO_TRANSLATION retained_intron ENSMUSG00000033916 Chmp2a ENSMUST00000005711 ENSMUSP00000005711 TRANSLATION protein_coding - CCDS20824.1 1 222.0 0.0 3.33 28.2 158.6 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000033916 Chmp2a ENSMUST00000211344 ENSMUSP00000148233 TRANSLATION protein_coding - - 5 162.0 0.0 2.0 0.0 51.4 0.0 -4,-2 0.0 2 3.342 MINOR ENSMUSG00000033916 Chmp2a ENSMUST00000209487 - NO_TRANSLATION retained_intron ENSMUSG00000033916 Chmp2a ENSMUST00000211626 ENSMUSP00000147393 TRANSLATION protein_coding - - 2 172.0 0.0 2.33 0.0 87.4 0.0 -4,-2 0.0 2 5.73 MINOR ENSMUSG00000033916 Chmp2a ENSMUST00000211369 ENSMUSP00000147937 TRANSLATION nonsense_mediated_decay - - 3 56.0 0.0 1.0 0.0 27.4 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000033916 Chmp2a ENSMUST00000210587 ENSMUSP00000148218 TRANSLATION protein_coding - CCDS20824.1 3 222.0 0.0 3.33 28.2 158.6 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000074141 Il4i1 ENSMUST00000133279 ENSMUSP00000133613 TRANSLATION protein_coding start - 2 54.0 0.0 0.965 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074141 Il4i1 ENSMUST00000149686 - NO_TRANSLATION retained_intron ENSMUSG00000074141 Il4i1 ENSMUST00000124695 - NO_TRANSLATION retained_intron ENSMUSG00000074141 Il4i1 ENSMUST00000118125 ENSMUSP00000113726 TRANSLATION protein_coding - CCDS52236.1 2 638.0 34.0 4.165 0.0 273.1 0.0 0,-3 0.4797 12 14.0 ALTERNATIVE:2 ENSMUSG00000074141 Il4i1 ENSMUST00000033015 ENSMUSP00000033015 TRANSLATION protein_coding - CCDS21217.1 1 630.0 34.0 4.165 0.0 273.1 0.0 3,-2 1.0 12 14.0 PRINCIPAL:2 ENSMUSG00000074141 Il4i1 ENSMUST00000149779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060621 Nkpd1 ENSMUST00000078908 ENSMUSP00000077943 TRANSLATION protein_coding - CCDS52059.1 1 825.0 0.0 0.0 0.1 91.5 3.0 -4,-5 0.968 2 0.0 PRINCIPAL:2 ENSMUSG00000060621 Nkpd1 ENSMUST00000207576 ENSMUSP00000147092 TRANSLATION protein_coding - CCDS52059.1 5 825.0 0.0 0.0 0.1 91.5 3.0 -4,-5 0.968 2 0.0 PRINCIPAL:2 ENSMUSG00000060621 Nkpd1 ENSMUST00000214205 ENSMUSP00000151162 TRANSLATION protein_coding - - 5 675.0 0.0 0.0 0.4 92.3 3.0 -4,-5 0.1312 2 0.0 ALTERNATIVE:2 ENSMUSG00000030922 Lyrm1 ENSMUST00000208202 ENSMUSP00000146699 TRANSLATION protein_coding - CCDS21790.1 5 122.0 0.0 2.0 19.4 48.2 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030922 Lyrm1 ENSMUST00000106516 ENSMUSP00000102126 TRANSLATION protein_coding - CCDS21790.1 1 122.0 0.0 2.0 19.4 48.2 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030922 Lyrm1 ENSMUST00000208411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030922 Lyrm1 ENSMUST00000106517 ENSMUSP00000102127 TRANSLATION protein_coding - CCDS21790.1 1 122.0 0.0 2.0 19.4 48.2 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030922 Lyrm1 ENSMUST00000106518 ENSMUSP00000102128 TRANSLATION protein_coding - CCDS21790.1 3 122.0 0.0 2.0 19.4 48.2 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030922 Lyrm1 ENSMUST00000207270 ENSMUSP00000146648 TRANSLATION protein_coding - CCDS21790.1 1 122.0 0.0 2.0 19.4 48.2 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030922 Lyrm1 ENSMUST00000054440 ENSMUSP00000051616 TRANSLATION protein_coding - CCDS21790.1 5 122.0 0.0 2.0 19.4 48.2 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030922 Lyrm1 ENSMUST00000208424 ENSMUSP00000146841 TRANSLATION protein_coding - CCDS21790.1 1 122.0 0.0 2.0 19.4 48.2 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030922 Lyrm1 ENSMUST00000207680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030909 Anks4b ENSMUST00000033201 ENSMUSP00000033201 TRANSLATION protein_coding - CCDS21793.1 1 423.0 0.0 1.04 3.6 91.3 0.0 -4,-5 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000053719 Klk1b26 ENSMUST00000048945 ENSMUSP00000047488 TRANSLATION protein_coding - CCDS39938.1 1 261.0 6.0 4.0 6.8 230.7 0.0 4,-1 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000030610 Det1 ENSMUST00000107431 ENSMUSP00000103054 TRANSLATION protein_coding - - 5 219.0 0.0 0.0 0.0 317.1 0.0 -4,-1 0.0007 - 0.0 MINOR ENSMUSG00000030610 Det1 ENSMUST00000138062 ENSMUSP00000145597 TRANSLATION protein_coding start - 3 72.0 0.0 0.0 0.0 41.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030610 Det1 ENSMUST00000032839 ENSMUSP00000032839 TRANSLATION protein_coding - CCDS21375.1 1 550.0 0.0 0.0 30.6 646.2 0.0 -4,-7 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000001988 Npas1 ENSMUST00000002053 ENSMUSP00000002053 TRANSLATION protein_coding - CCDS20850.1 5 594.0 0.0 5.175 4.3 113.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000001988 Npas1 ENSMUST00000211103 - NO_TRANSLATION retained_intron ENSMUSG00000001988 Npas1 ENSMUST00000211695 - NO_TRANSLATION retained_intron ENSMUSG00000001988 Npas1 ENSMUST00000210748 ENSMUSP00000147412 TRANSLATION protein_coding - CCDS20850.1 1 594.0 0.0 5.175 4.3 113.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040614 Nlrp9c ENSMUST00000160948 - NO_TRANSLATION retained_intron ENSMUSG00000040614 Nlrp9c ENSMUST00000085944 ENSMUSP00000083106 TRANSLATION protein_coding - CCDS39843.1 1 1004.0 5.0 5.998 0.4 206.0 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000040614 Nlrp9c ENSMUST00000160514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040614 Nlrp9c ENSMUST00000160277 - NO_TRANSLATION retained_intron ENSMUSG00000040614 Nlrp9c ENSMUST00000041845 ENSMUSP00000036041 TRANSLATION protein_coding - - 1 876.0 5.0 4.764 0.0 188.2 0.0 -4,-5 0.0321 - 13.466 MINOR ENSMUSG00000067173 Mrgpra4 ENSMUST00000087092 ENSMUSP00000084327 TRANSLATION protein_coding - CCDS21298.1 - 313.0 0.0 1.0 0.0 37.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000006310 Zbtb32 ENSMUST00000144532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006310 Zbtb32 ENSMUST00000108150 ENSMUSP00000103785 TRANSLATION protein_coding - - 1 101.0 10.0 0.93 0.0 22.2 0.0 -4,-6 0.0 - 8.412 MINOR ENSMUSG00000006310 Zbtb32 ENSMUST00000108151 ENSMUSP00000103786 TRANSLATION protein_coding - CCDS21102.1 5 465.0 12.0 2.73 0.0 78.4 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000070844 Vmn2r42 ENSMUST00000136957 - NO_TRANSLATION retained_intron ENSMUSG00000070844 Vmn2r42 ENSMUST00000233668 ENSMUSP00000156932 TRANSLATION nonsense_mediated_decay - - - 338.0 0.0 0.72 0.0 82.7 0.0 2,-3 0.0012 - -2.0 MINOR ENSMUSG00000070844 Vmn2r42 ENSMUST00000086282 ENSMUSP00000083463 TRANSLATION protein_coding - CCDS57483.1 1 852.0 4.0 3.304 0.1 389.9 10.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000070844 Vmn2r42 ENSMUST00000146278 ENSMUSP00000119761 TRANSLATION protein_coding - - 5 802.0 2.0 2.704 0.1 377.4 9.0 2,-3 0.0495 - 12.05 MINOR ENSMUSG00000070844 Vmn2r42 ENSMUST00000142934 ENSMUSP00000123451 TRANSLATION protein_coding - - 5 567.0 2.0 2.304 0.0 169.8 0.0 2,-3 0.0017 - 6.002 MINOR ENSMUSG00000030500 Slc17a6 ENSMUST00000208597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030500 Slc17a6 ENSMUST00000207945 ENSMUSP00000146364 TRANSLATION nonsense_mediated_decay - - 1 202.0 0.0 1.76 0.0 41.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030500 Slc17a6 ENSMUST00000032710 ENSMUSP00000032710 TRANSLATION protein_coding - CCDS39969.1 1 582.0 0.0 8.44 30.2 161.3 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000030500 Slc17a6 ENSMUST00000207375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003420 Fcgrt ENSMUST00000209830 ENSMUSP00000147757 TRANSLATION protein_coding stop - 1 36.0 0.0 0.95 0.0 0.0 0.0 4,-1 0.0014 - -2.0 MINOR ENSMUSG00000003420 Fcgrt ENSMUST00000003512 ENSMUSP00000003512 TRANSLATION protein_coding - CCDS52243.1 1 365.0 0.0 5.65 1.3 235.7 1.0 4,-1 0.7203 7 8.5 ALTERNATIVE:2 ENSMUSG00000003420 Fcgrt ENSMUST00000211085 ENSMUSP00000147969 TRANSLATION protein_coding stop - 5 154.0 0.0 2.95 0.0 140.8 0.0 4,-1 0.0 2 -2.0 MINOR ENSMUSG00000003420 Fcgrt ENSMUST00000211668 - NO_TRANSLATION retained_intron ENSMUSG00000003420 Fcgrt ENSMUST00000211535 - NO_TRANSLATION retained_intron ENSMUSG00000003420 Fcgrt ENSMUST00000210642 ENSMUSP00000147496 TRANSLATION protein_coding - - 1 369.0 0.0 5.65 1.3 241.5 1.0 4,-1 0.8462 7 9.0 PRINCIPAL:4 ENSMUSG00000099689 Zfp383 ENSMUST00000187028 ENSMUSP00000141019 TRANSLATION nonsense_mediated_decay - - 2 143.0 0.0 1.0 0.0 83.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000099689 Zfp383 ENSMUST00000186475 ENSMUSP00000140742 TRANSLATION protein_coding - CCDS80690.1 1 490.0 44.0 2.0 0.1 333.6 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000070777 Ceacam20 ENSMUST00000207248 ENSMUSP00000147118 TRANSLATION protein_coding start - 3 128.0 0.0 0.49 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000070777 Ceacam20 ENSMUST00000094753 ENSMUSP00000092344 TRANSLATION protein_coding - CCDS20919.1 1 577.0 0.0 3.9235 0.1 140.8 0.0 1,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000063089 Klk1b8 ENSMUST00000072204 ENSMUSP00000072063 TRANSLATION protein_coding - CCDS21189.1 1 261.0 6.0 4.0 6.1 228.0 0.0 4,-1 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000002210 Smg9 ENSMUST00000123188 ENSMUSP00000114943 TRANSLATION protein_coding start/stop - 5 118.0 0.0 3.15 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002210 Smg9 ENSMUST00000148288 - NO_TRANSLATION retained_intron ENSMUSG00000002210 Smg9 ENSMUST00000108434 ENSMUSP00000104073 TRANSLATION protein_coding stop - 3 210.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000002210 Smg9 ENSMUST00000002280 ENSMUSP00000002280 TRANSLATION protein_coding - CCDS20949.1 1 520.0 0.0 7.1 9.8 22.9 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000002210 Smg9 ENSMUST00000146686 - NO_TRANSLATION retained_intron ENSMUSG00000002210 Smg9 ENSMUST00000146381 - NO_TRANSLATION retained_intron ENSMUSG00000002210 Smg9 ENSMUST00000139481 - NO_TRANSLATION retained_intron ENSMUSG00000109969 Zscan4-ps3 ENSMUST00000210559 ENSMUSP00000147528 TRANSLATION protein_coding - - 5 506.0 15.0 0.2 0.0 111.5 0.0 -4,-5 0.7932 - 18.0 PRINCIPAL:1 ENSMUSG00000030643 Rab30 ENSMUST00000107179 ENSMUSP00000102797 TRANSLATION protein_coding - - 5 175.0 19.0 3.5 4.4 131.7 0.0 -4,-6 0.0346 4 9.686 MINOR ENSMUSG00000030643 Rab30 ENSMUST00000107180 ENSMUSP00000102798 TRANSLATION protein_coding - CCDS21450.1 1 203.0 24.0 4.25 36.9 196.0 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000030643 Rab30 ENSMUST00000208945 ENSMUSP00000146581 TRANSLATION protein_coding stop - 3 107.0 17.0 2.75 0.0 127.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000030643 Rab30 ENSMUST00000208470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030643 Rab30 ENSMUST00000032879 ENSMUSP00000032879 TRANSLATION protein_coding - CCDS21450.1 1 203.0 24.0 4.25 36.9 196.0 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000053964 Lgals4 ENSMUST00000127093 - NO_TRANSLATION retained_intron ENSMUSG00000053964 Lgals4 ENSMUST00000126603 - NO_TRANSLATION retained_intron ENSMUSG00000053964 Lgals4 ENSMUST00000208971 ENSMUSP00000146429 TRANSLATION protein_coding - - 1 302.0 18.0 6.58 3.7 258.8 0.0 -4,-6 0.5854 12 18.442 MINOR ENSMUSG00000053964 Lgals4 ENSMUST00000066723 ENSMUSP00000066461 TRANSLATION protein_coding - CCDS21058.1 1 326.0 18.0 6.946 5.6 258.8 0.0 -4,-6 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000053964 Lgals4 ENSMUST00000151547 ENSMUSP00000141005 TRANSLATION nonsense_mediated_decay start - 5 160.0 9.0 2.696 0.0 116.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000053964 Lgals4 ENSMUST00000125155 - NO_TRANSLATION retained_intron ENSMUSG00000053964 Lgals4 ENSMUST00000137468 - NO_TRANSLATION retained_intron ENSMUSG00000063177 Klk1b27 ENSMUST00000079859 ENSMUSP00000078786 TRANSLATION protein_coding - CCDS21194.1 1 263.0 6.0 4.0 6.1 235.6 0.0 4,-1 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000030447 Cyfip1 ENSMUST00000174793 - NO_TRANSLATION retained_intron ENSMUSG00000030447 Cyfip1 ENSMUST00000173497 - NO_TRANSLATION retained_intron ENSMUSG00000030447 Cyfip1 ENSMUST00000205656 - NO_TRANSLATION retained_intron ENSMUSG00000030447 Cyfip1 ENSMUST00000032629 ENSMUSP00000032629 TRANSLATION protein_coding - CCDS21315.1 1 1253.0 0.0 23.67 34.6 1348.9 0.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000030447 Cyfip1 ENSMUST00000173384 - NO_TRANSLATION retained_intron ENSMUSG00000030447 Cyfip1 ENSMUST00000168271 - NO_TRANSLATION retained_intron ENSMUSG00000030447 Cyfip1 ENSMUST00000173267 - NO_TRANSLATION retained_intron ENSMUSG00000030447 Cyfip1 ENSMUST00000206862 ENSMUSP00000146194 TRANSLATION protein_coding stop - 5 969.0 0.0 19.97 0.0 1015.8 0.0 -4,-5 0.0566 17 -2.0 MINOR ENSMUSG00000030447 Cyfip1 ENSMUST00000085255 ENSMUSP00000082353 TRANSLATION protein_coding - CCDS52262.1 1 1251.0 0.0 23.5 25.3 1305.5 0.0 -4,-5 0.8666 24 11.946 MINOR ENSMUSG00000030447 Cyfip1 ENSMUST00000174660 - NO_TRANSLATION retained_intron ENSMUSG00000030447 Cyfip1 ENSMUST00000173783 ENSMUSP00000134509 TRANSLATION protein_coding stop - 3 229.0 0.0 3.64 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030447 Cyfip1 ENSMUST00000163845 ENSMUSP00000127717 TRANSLATION protein_coding - CCDS21315.1 1 1253.0 0.0 23.67 34.6 1348.9 0.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000046574 Prr12 ENSMUST00000210410 - NO_TRANSLATION retained_intron ENSMUSG00000046574 Prr12 ENSMUST00000057293 ENSMUSP00000054702 TRANSLATION protein_coding - CCDS52241.1 5 2035.0 0.0 0.0 0.0 60.1 0.0 -4,-6 1.0 17 6.0 PRINCIPAL:1 ENSMUSG00000007209 Ceacam9 ENSMUST00000001984 ENSMUSP00000001984 TRANSLATION protein_coding - CCDS20852.1 1 234.0 0.0 2.0 0.0 98.6 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000007209 Ceacam9 ENSMUST00000206252 ENSMUSP00000145785 TRANSLATION protein_coding stop - 5 150.0 0.0 1.0 0.0 50.9 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000062116 Zfp954 ENSMUST00000056246 ENSMUSP00000072585 TRANSLATION protein_coding - CCDS51991.1 1 416.0 32.0 0.55 0.4 236.6 0.0 -2,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000062116 Zfp954 ENSMUST00000210142 - NO_TRANSLATION retained_intron ENSMUSG00000044453 Ffar1 ENSMUST00000052700 ENSMUSP00000055564 TRANSLATION protein_coding - CCDS21113.1 - 300.0 0.0 1.0 9.4 62.8 0.0 -2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030543 Mesp2 ENSMUST00000107394 ENSMUSP00000103017 TRANSLATION protein_coding - CCDS39993.1 1 370.0 0.0 0.5 1.2 51.1 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000003549 Ercc1 ENSMUST00000162197 - NO_TRANSLATION retained_intron ENSMUSG00000003549 Ercc1 ENSMUST00000177486 ENSMUSP00000135161 TRANSLATION nonsense_mediated_decay start - 2 37.0 0.0 0.75 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000003549 Ercc1 ENSMUST00000161378 ENSMUSP00000135021 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003549 Ercc1 ENSMUST00000176818 ENSMUSP00000135767 TRANSLATION protein_coding start/stop - 3 123.0 0.0 2.72375 0.0 114.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000003549 Ercc1 ENSMUST00000176723 - NO_TRANSLATION retained_intron ENSMUSG00000003549 Ercc1 ENSMUST00000162992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003549 Ercc1 ENSMUST00000003645 ENSMUSP00000003645 TRANSLATION protein_coding - CCDS20898.1 1 298.0 0.0 6.35 5.7 200.0 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000003549 Ercc1 ENSMUST00000160909 - NO_TRANSLATION retained_intron ENSMUSG00000003549 Ercc1 ENSMUST00000160192 - NO_TRANSLATION retained_intron ENSMUSG00000003549 Ercc1 ENSMUST00000160369 ENSMUSP00000125655 TRANSLATION protein_coding - CCDS52057.1 1 245.0 0.0 4.515 0.0 174.9 0.0 -4,-5 0.0275 3 6.822 MINOR ENSMUSG00000025508 Rplp2 ENSMUST00000137307 - NO_TRANSLATION retained_intron ENSMUSG00000025508 Rplp2 ENSMUST00000140099 - NO_TRANSLATION retained_intron ENSMUSG00000025508 Rplp2 ENSMUST00000106003 ENSMUSP00000101625 TRANSLATION protein_coding - CCDS40187.1 2 115.0 0.0 3.25 29.2 90.3 0.0 -2,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025508 Rplp2 ENSMUST00000106004 ENSMUSP00000101626 TRANSLATION protein_coding - CCDS40187.1 2 115.0 0.0 3.25 29.2 90.3 0.0 -2,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025508 Rplp2 ENSMUST00000134636 - NO_TRANSLATION retained_intron ENSMUSG00000025508 Rplp2 ENSMUST00000084434 ENSMUSP00000081474 TRANSLATION protein_coding - CCDS40187.1 1 115.0 0.0 3.25 29.2 90.3 0.0 -2,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000059136 Or13a25 ENSMUST00000219579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059136 Or13a25 ENSMUST00000218865 ENSMUSP00000151522 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 2.3 168.7 7.0 -4,-7 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000059136 Or13a25 ENSMUST00000219853 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059136 Or13a25 ENSMUST00000078967 ENSMUSP00000077990 TRANSLATION protein_coding - CCDS21982.1 - 319.0 0.0 1.0 0.3 168.7 7.0 -4,-5 0.5706 - 8.0 ALTERNATIVE:2 ENSMUSG00000030510 Cers3 ENSMUST00000066475 ENSMUSP00000069238 TRANSLATION protein_coding - CCDS52268.1 1 419.0 0.0 8.32 0.0 159.1 5.0 -4,-5 0.2049 4 12.0 MINOR ENSMUSG00000030510 Cers3 ENSMUST00000208521 ENSMUSP00000146745 TRANSLATION protein_coding - - 1 383.0 0.0 8.32 16.0 159.1 5.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078671 Chd2 ENSMUST00000172704 ENSMUSP00000134484 TRANSLATION protein_coding stop - 5 178.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078671 Chd2 ENSMUST00000200423 ENSMUSP00000142885 TRANSLATION protein_coding start/stop - 5 113.0 0.0 2.75 0.0 54.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078671 Chd2 ENSMUST00000026895 ENSMUSP00000026895 TRANSLATION protein_coding stop - 5 333.0 0.0 2.65 0.0 38.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078671 Chd2 ENSMUST00000197800 - NO_TRANSLATION retained_intron ENSMUSG00000078671 Chd2 ENSMUST00000199601 ENSMUSP00000143203 TRANSLATION nonsense_mediated_decay start - 5 74.0 0.0 1.75 0.0 39.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078671 Chd2 ENSMUST00000169922 ENSMUSP00000126352 TRANSLATION protein_coding - CCDS52274.1 5 1827.0 7.0 20.357 5.3 504.0 0.0 -4,-5 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000078671 Chd2 ENSMUST00000199809 ENSMUSP00000142959 TRANSLATION nonsense_mediated_decay start - 5 220.0 0.0 2.28 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000078671 Chd2 ENSMUST00000038366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078671 Chd2 ENSMUST00000200218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078671 Chd2 ENSMUST00000206665 - NO_TRANSLATION retained_intron ENSMUSG00000078671 Chd2 ENSMUST00000198225 - NO_TRANSLATION retained_intron ENSMUSG00000078671 Chd2 ENSMUST00000200492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078671 Chd2 ENSMUST00000208458 ENSMUSP00000147180 TRANSLATION nonsense_mediated_decay start - 5 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000078671 Chd2 ENSMUST00000199831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078671 Chd2 ENSMUST00000197642 ENSMUSP00000142408 TRANSLATION protein_coding stop - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000078671 Chd2 ENSMUST00000181971 ENSMUSP00000137985 TRANSLATION nonsense_mediated_decay start - 5 35.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000078671 Chd2 ENSMUST00000173785 ENSMUSP00000133714 TRANSLATION protein_coding start/stop - 5 163.0 0.0 1.75 0.0 56.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000078671 Chd2 ENSMUST00000199641 ENSMUSP00000142848 TRANSLATION protein_coding start/stop - 5 120.0 0.0 3.0 0.0 99.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053801 Grwd1 ENSMUST00000211265 ENSMUSP00000147629 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 0.0 0.0 26.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000053801 Grwd1 ENSMUST00000131384 ENSMUSP00000116252 TRANSLATION protein_coding - CCDS21266.2 1 446.0 0.0 2.035 9.9 112.1 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000053801 Grwd1 ENSMUST00000209484 ENSMUSP00000148100 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053801 Grwd1 ENSMUST00000107723 ENSMUSP00000103351 TRANSLATION protein_coding - CCDS21266.2 1 446.0 0.0 2.035 9.9 112.1 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000049709 Nlrp10 ENSMUST00000055745 ENSMUSP00000050252 TRANSLATION protein_coding - CCDS21730.1 1 673.0 10.0 1.4 0.0 179.6 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000030590 Fam98c ENSMUST00000164589 ENSMUSP00000131477 TRANSLATION protein_coding - CCDS52167.1 5 344.0 0.0 0.0 0.4 307.8 0.0 -4,-6 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000030590 Fam98c ENSMUST00000150431 - NO_TRANSLATION retained_intron ENSMUSG00000030590 Fam98c ENSMUST00000123545 - NO_TRANSLATION retained_intron ENSMUSG00000030590 Fam98c ENSMUST00000144795 ENSMUSP00000121796 TRANSLATION protein_coding start - 5 259.0 0.0 0.0 0.0 175.7 0.0 -4,-5 0.0012 9 -2.0 MINOR ENSMUSG00000030590 Fam98c ENSMUST00000134176 ENSMUSP00000120165 TRANSLATION protein_coding - - 2 142.0 0.0 0.0 0.0 166.6 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000030590 Fam98c ENSMUST00000147561 - NO_TRANSLATION retained_intron ENSMUSG00000030590 Fam98c ENSMUST00000138084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030590 Fam98c ENSMUST00000123416 ENSMUSP00000122992 TRANSLATION protein_coding start/stop - 5 135.0 0.0 0.0 0.0 63.9 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000030590 Fam98c ENSMUST00000153251 ENSMUSP00000117500 TRANSLATION protein_coding start - 3 213.0 0.0 0.0 0.0 171.0 0.0 -4,-1 0.0 7 -2.0 MINOR ENSMUSG00000040987 Mill2 ENSMUST00000206487 ENSMUSP00000145895 TRANSLATION nonsense_mediated_decay - - 1 58.0 0.0 0.0 0.0 0.0 0.0 3,-3 0.0017 - -2.0 MINOR ENSMUSG00000040987 Mill2 ENSMUST00000072386 ENSMUSP00000072223 TRANSLATION protein_coding - CCDS20880.1 1 355.0 0.0 2.8 0.0 144.5 0.0 3,-2 0.3919 9 8.0 ALTERNATIVE:2 ENSMUSG00000040987 Mill2 ENSMUST00000207014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040987 Mill2 ENSMUST00000227379 ENSMUSP00000154222 TRANSLATION protein_coding - CCDS20879.1 - 340.0 0.0 2.8 0.0 145.1 0.0 3,-3 1.0 9 8.0 PRINCIPAL:2 ENSMUSG00000040987 Mill2 ENSMUST00000228493 ENSMUSP00000154268 TRANSLATION protein_coding - CCDS20880.1 - 355.0 0.0 2.8 0.0 144.5 0.0 3,-2 0.3919 9 8.0 ALTERNATIVE:2 ENSMUSG00000040987 Mill2 ENSMUST00000072415 ENSMUSP00000072246 TRANSLATION protein_coding - CCDS20879.1 1 340.0 0.0 2.8 0.0 145.1 0.0 3,-3 1.0 9 8.0 PRINCIPAL:2 ENSMUSG00000018819 Lsp1 ENSMUST00000105967 ENSMUSP00000101587 TRANSLATION protein_coding - CCDS72072.1 1 324.0 0.0 0.0 0.4 88.8 0.0 -4,-5 0.4488 11 0.0 ALTERNATIVE:2 ENSMUSG00000018819 Lsp1 ENSMUST00000156960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018819 Lsp1 ENSMUST00000142408 - NO_TRANSLATION retained_intron ENSMUSG00000018819 Lsp1 ENSMUST00000132956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018819 Lsp1 ENSMUST00000140626 ENSMUSP00000147933 TRANSLATION protein_coding stop - 5 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018819 Lsp1 ENSMUST00000149521 ENSMUSP00000147500 TRANSLATION protein_coding - CCDS85469.1 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0459 2 0.0 MINOR ENSMUSG00000018819 Lsp1 ENSMUST00000105968 ENSMUSP00000101588 TRANSLATION protein_coding - CCDS52450.1 1 330.0 0.0 0.0 0.4 88.8 0.0 -4,-5 0.5097 12 0.0 ALTERNATIVE:2 ENSMUSG00000018819 Lsp1 ENSMUST00000128986 - NO_TRANSLATION retained_intron ENSMUSG00000018819 Lsp1 ENSMUST00000126149 - NO_TRANSLATION retained_intron ENSMUSG00000018819 Lsp1 ENSMUST00000038946 ENSMUSP00000040637 TRANSLATION protein_coding - CCDS40193.1 1 328.0 0.0 0.0 0.4 88.8 0.0 -4,-2 1.0 12 0.0 PRINCIPAL:2 ENSMUSG00000018819 Lsp1 ENSMUST00000018963 ENSMUSP00000018963 TRANSLATION protein_coding - CCDS52450.1 1 330.0 0.0 0.0 0.4 88.8 0.0 -4,-5 0.5097 12 0.0 ALTERNATIVE:2 ENSMUSG00000018819 Lsp1 ENSMUST00000105966 ENSMUSP00000101586 TRANSLATION protein_coding - CCDS72073.1 1 322.0 0.0 0.0 0.4 88.8 0.0 -4,-2 0.4723 11 0.0 ALTERNATIVE:2 ENSMUSG00000030498 Gas2 ENSMUST00000145049 ENSMUSP00000117367 TRANSLATION protein_coding stop - 2 185.0 0.0 2.02 0.0 55.3 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000030498 Gas2 ENSMUST00000107589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030498 Gas2 ENSMUST00000107591 ENSMUSP00000103217 TRANSLATION protein_coding - CCDS21310.1 1 314.0 4.0 4.62 21.8 151.0 0.0 -4,-2 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000030498 Gas2 ENSMUST00000129604 ENSMUSP00000114743 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000030498 Gas2 ENSMUST00000155925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030498 Gas2 ENSMUST00000132335 - NO_TRANSLATION retained_intron ENSMUSG00000030498 Gas2 ENSMUST00000051912 ENSMUSP00000053514 TRANSLATION protein_coding - CCDS21310.1 1 314.0 4.0 4.62 21.8 151.0 0.0 -4,-2 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000030498 Gas2 ENSMUST00000145723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030498 Gas2 ENSMUST00000208711 ENSMUSP00000146537 TRANSLATION protein_coding - CCDS21310.1 1 314.0 4.0 4.62 21.8 151.0 0.0 -4,-2 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000054594 Oscar ENSMUST00000039507 ENSMUSP00000041306 TRANSLATION protein_coding - CCDS20718.1 1 271.0 0.0 2.63 1.1 37.3 1.0 1,-2 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000054594 Oscar ENSMUST00000148012 ENSMUSP00000123672 TRANSLATION protein_coding - - 5 254.0 0.0 2.3 0.0 37.3 1.0 0,-3 0.0257 - 7.25 MINOR ENSMUSG00000054594 Oscar ENSMUST00000108645 ENSMUSP00000104285 TRANSLATION protein_coding - CCDS71872.1 1 265.0 0.0 2.3 1.1 37.3 1.0 3,-1 0.4791 - 8.25 ALTERNATIVE:2 ENSMUSG00000054594 Oscar ENSMUST00000148645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030452 Nipa2 ENSMUST00000143325 ENSMUSP00000119946 TRANSLATION protein_coding stop - 3 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0212 - -2.0 MINOR ENSMUSG00000030452 Nipa2 ENSMUST00000130239 - NO_TRANSLATION retained_intron ENSMUSG00000030452 Nipa2 ENSMUST00000147950 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030452 Nipa2 ENSMUST00000119201 ENSMUSP00000114020 TRANSLATION protein_coding - CCDS21316.1 1 359.0 0.0 5.0 18.8 493.8 11.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030452 Nipa2 ENSMUST00000119041 ENSMUSP00000112394 TRANSLATION protein_coding - CCDS21316.1 5 359.0 0.0 5.0 18.8 493.8 11.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030452 Nipa2 ENSMUST00000205773 - NO_TRANSLATION retained_intron ENSMUSG00000030452 Nipa2 ENSMUST00000126604 ENSMUSP00000116219 TRANSLATION protein_coding stop - 3 130.0 0.0 3.5 0.0 221.0 6.0 -4,-7 0.0027 - -2.0 MINOR ENSMUSG00000030452 Nipa2 ENSMUST00000135849 - NO_TRANSLATION retained_intron ENSMUSG00000030452 Nipa2 ENSMUST00000032635 ENSMUSP00000032635 TRANSLATION protein_coding - CCDS21316.1 1 359.0 0.0 5.0 18.8 493.8 11.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030452 Nipa2 ENSMUST00000117812 ENSMUSP00000113727 TRANSLATION protein_coding - CCDS21316.1 2 359.0 0.0 5.0 18.8 493.8 11.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030452 Nipa2 ENSMUST00000152649 ENSMUSP00000120798 TRANSLATION protein_coding stop - 5 127.0 0.0 3.5 0.0 180.5 5.0 -4,-7 0.0027 - -2.0 MINOR ENSMUSG00000056696 Or5bw2 ENSMUST00000207221 ENSMUSP00000146486 TRANSLATION protein_coding - CCDS20781.1 3 308.0 0.0 1.0 3.7 170.5 5.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056696 Or5bw2 ENSMUST00000219278 ENSMUSP00000151318 TRANSLATION protein_coding - CCDS20781.1 5 308.0 0.0 1.0 3.7 170.5 5.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056696 Or5bw2 ENSMUST00000070985 ENSMUSP00000069927 TRANSLATION protein_coding - CCDS20781.1 - 308.0 0.0 1.0 3.7 170.5 5.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000046179 E2f8 ENSMUST00000119223 ENSMUSP00000112883 TRANSLATION protein_coding - CCDS39967.1 1 860.0 0.0 3.0 0.0 139.7 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000046179 E2f8 ENSMUST00000151139 - NO_TRANSLATION retained_intron ENSMUSG00000046179 E2f8 ENSMUST00000058745 ENSMUSP00000056778 TRANSLATION protein_coding - CCDS39967.1 1 860.0 0.0 3.0 0.0 139.7 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000046179 E2f8 ENSMUST00000136142 - NO_TRANSLATION retained_intron ENSMUSG00000096146 Kcnj11 ENSMUST00000180081 ENSMUSP00000136002 TRANSLATION protein_coding stop - 2 254.0 0.0 3.0 0.0 352.7 3.0 -3,-5 0.0007 - -2.0 MINOR ENSMUSG00000096146 Kcnj11 ENSMUST00000211674 ENSMUSP00000147439 TRANSLATION protein_coding - CCDS21274.1 - 390.0 0.0 5.88 12.1 451.7 4.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000096146 Kcnj11 ENSMUST00000209291 ENSMUSP00000147801 TRANSLATION protein_coding stop - 2 83.0 0.0 1.33 0.0 115.2 1.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000096146 Kcnj11 ENSMUST00000209863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096146 Kcnj11 ENSMUST00000209881 ENSMUSP00000148249 TRANSLATION protein_coding stop - 5 142.0 0.0 2.75 0.0 172.1 4.0 -4,-7 0.004 1 -2.0 MINOR ENSMUSG00000093973 Mrgpra2a ENSMUST00000159004 ENSMUSP00000124631 TRANSLATION protein_coding - CCDS52256.1 1 331.0 0.0 1.0 0.4 55.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047225 Or56a4 ENSMUST00000060893 ENSMUSP00000055880 TRANSLATION protein_coding - CCDS21643.1 - 312.0 0.0 1.0 8.2 244.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047225 Or56a4 ENSMUST00000215552 ENSMUSP00000149627 TRANSLATION protein_coding - CCDS21643.1 5 312.0 0.0 1.0 8.2 244.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047225 Or56a4 ENSMUST00000217136 ENSMUSP00000150107 TRANSLATION protein_coding - CCDS21643.1 5 312.0 0.0 1.0 8.2 244.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047225 Or56a4 ENSMUST00000215744 ENSMUSP00000149904 TRANSLATION protein_coding - CCDS21643.1 5 312.0 0.0 1.0 8.2 244.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000110206 Flt3l ENSMUST00000210197 ENSMUSP00000148009 TRANSLATION protein_coding - - 5 276.0 0.0 3.665 0.0 203.8 2.0 0,2 0.0543 - 7.34 ALTERNATIVE:2 ENSMUSG00000110206 Flt3l ENSMUST00000210083 - NO_TRANSLATION retained_intron ENSMUSG00000110206 Flt3l ENSMUST00000211503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110206 Flt3l ENSMUST00000211542 - NO_TRANSLATION retained_intron ENSMUSG00000110206 Flt3l ENSMUST00000209612 ENSMUSP00000147578 TRANSLATION protein_coding start/stop - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0008 - -2.0 MINOR ENSMUSG00000110206 Flt3l ENSMUST00000209238 ENSMUSP00000148156 TRANSLATION nonsense_mediated_decay - CCDS39948.1 5 232.0 0.0 3.995 0.1 207.4 2.0 4,-1 0.5348 - -2.0 MINOR ENSMUSG00000110206 Flt3l ENSMUST00000211429 ENSMUSP00000147468 TRANSLATION protein_coding - - 1 255.0 0.0 3.995 0.0 207.4 2.0 0,2 0.8096 - 8.0 PRINCIPAL:2 ENSMUSG00000110206 Flt3l ENSMUST00000210832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110206 Flt3l ENSMUST00000146760 ENSMUSP00000123506 TRANSLATION protein_coding - CCDS39948.1 1 232.0 0.0 3.995 0.1 207.4 2.0 4,-1 0.5348 - 8.0 ALTERNATIVE:2 ENSMUSG00000110206 Flt3l ENSMUST00000210818 ENSMUSP00000147324 TRANSLATION nonsense_mediated_decay - - 1 169.0 0.0 3.5 0.0 203.8 0.0 4,-1 0.0441 - -2.0 MINOR ENSMUSG00000110206 Flt3l ENSMUST00000211246 ENSMUSP00000147278 TRANSLATION protein_coding - - 1 220.0 0.0 3.83 0.0 207.4 0.0 4,-1 0.137 - 7.67 ALTERNATIVE:2 ENSMUSG00000110206 Flt3l ENSMUST00000210612 - NO_TRANSLATION retained_intron ENSMUSG00000110206 Flt3l ENSMUST00000210175 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030528 Blm ENSMUST00000081314 ENSMUSP00000080062 TRANSLATION protein_coding - CCDS40000.1 1 1416.0 16.0 14.83 0.0 1236.1 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:4 ENSMUSG00000030528 Blm ENSMUST00000206518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030528 Blm ENSMUST00000205584 - NO_TRANSLATION retained_intron ENSMUSG00000030528 Blm ENSMUST00000206901 ENSMUSP00000146062 TRANSLATION protein_coding start - 5 155.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030528 Blm ENSMUST00000170315 ENSMUSP00000127995 TRANSLATION protein_coding - CCDS52281.1 1 1419.0 16.0 14.83 0.0 1236.1 0.0 -4,-2 0.8326 7 14.0 ALTERNATIVE:2 ENSMUSG00000030528 Blm ENSMUST00000205263 - NO_TRANSLATION retained_intron ENSMUSG00000030528 Blm ENSMUST00000205713 - NO_TRANSLATION retained_intron ENSMUSG00000030528 Blm ENSMUST00000206948 - NO_TRANSLATION retained_intron ENSMUSG00000030528 Blm ENSMUST00000206989 ENSMUSP00000146098 TRANSLATION nonsense_mediated_decay start - 5 42.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030528 Blm ENSMUST00000205730 ENSMUSP00000145573 TRANSLATION nonsense_mediated_decay start - 5 51.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000002992 Apoc2 ENSMUST00000003074 ENSMUSP00000003074 TRANSLATION protein_coding - CCDS39801.1 1 97.0 0.0 1.75 7.1 132.6 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000002992 Apoc2 ENSMUST00000134116 ENSMUSP00000118291 TRANSLATION protein_coding - CCDS39801.1 3 97.0 0.0 1.75 7.1 132.6 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000002992 Apoc2 ENSMUST00000142352 ENSMUSP00000115173 TRANSLATION protein_coding - CCDS39801.1 1 97.0 0.0 1.75 7.1 132.6 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000013091 Tmem190 ENSMUST00000206395 - NO_TRANSLATION retained_intron ENSMUSG00000013091 Tmem190 ENSMUST00000013235 ENSMUSP00000013235 TRANSLATION protein_coding - CCDS51976.1 1 166.0 0.0 1.75 0.0 222.5 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000039043 Arpin ENSMUST00000048731 ENSMUSP00000049440 TRANSLATION protein_coding - CCDS21390.1 1 226.0 0.0 0.0 23.9 355.4 0.0 -4,-7 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000040511 Pvr ENSMUST00000159413 - NO_TRANSLATION retained_intron ENSMUSG00000040511 Pvr ENSMUST00000043517 ENSMUSP00000039205 TRANSLATION protein_coding - CCDS20916.1 1 408.0 0.0 2.74 0.0 134.4 0.0 3,-4 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000040511 Pvr ENSMUST00000159261 - NO_TRANSLATION retained_intron ENSMUSG00000040511 Pvr ENSMUST00000160572 - NO_TRANSLATION retained_intron ENSMUSG00000040511 Pvr ENSMUST00000208861 - NO_TRANSLATION retained_intron ENSMUSG00000040734 Ppp1r13l ENSMUST00000140836 ENSMUSP00000114443 TRANSLATION protein_coding stop - 3 114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040734 Ppp1r13l ENSMUST00000132655 ENSMUSP00000118309 TRANSLATION protein_coding stop - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040734 Ppp1r13l ENSMUST00000150448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040734 Ppp1r13l ENSMUST00000047621 ENSMUSP00000047839 TRANSLATION protein_coding - CCDS20899.1 1 824.0 0.0 4.5 2.1 92.0 0.0 -4,-5 1.0 20 13.0 PRINCIPAL:1 ENSMUSG00000040734 Ppp1r13l ENSMUST00000127785 ENSMUSP00000116351 TRANSLATION protein_coding stop - 5 112.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000003269 Cyth2 ENSMUST00000107729 ENSMUSP00000103357 TRANSLATION protein_coding - CCDS52249.1 1 399.0 12.0 10.698 29.4 321.4 0.0 -4,-5 1.0 3 21.334 PRINCIPAL:1 ENSMUSG00000003269 Cyth2 ENSMUST00000210853 ENSMUSP00000147451 TRANSLATION nonsense_mediated_decay - - 5 283.0 0.0 7.198 0.0 224.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003269 Cyth2 ENSMUST00000210137 ENSMUSP00000147723 TRANSLATION nonsense_mediated_decay start - 5 124.0 0.0 3.0 0.0 53.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000003269 Cyth2 ENSMUST00000210898 ENSMUSP00000147275 TRANSLATION protein_coding start - 5 140.0 0.0 1.198 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000003269 Cyth2 ENSMUST00000209245 ENSMUSP00000147457 TRANSLATION nonsense_mediated_decay - - 5 292.0 0.0 7.198 0.0 224.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003269 Cyth2 ENSMUST00000211263 ENSMUSP00000147587 TRANSLATION protein_coding stop - 5 166.0 0.0 4.83 0.0 141.1 0.0 -4,-6 0.0004 1 -2.0 MINOR ENSMUSG00000003269 Cyth2 ENSMUST00000223361 ENSMUSP00000152189 TRANSLATION protein_coding start/stop - 5 202.0 13.0 5.25 0.0 169.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000003269 Cyth2 ENSMUST00000247844 ENSMUSP00000159530 TRANSLATION protein_coding - - - 444.0 12.0 10.698 0.0 321.4 0.0 -4,-5 0.0267 4 17.334 MINOR ENSMUSG00000003269 Cyth2 ENSMUST00000211783 ENSMUSP00000147706 TRANSLATION protein_coding - - 5 383.0 12.0 10.5 1.9 321.4 0.0 -4,-6 0.165 3 17.066 MINOR ENSMUSG00000095358 Vmn1r165 ENSMUST00000179594 ENSMUSP00000136625 TRANSLATION protein_coding - CCDS52127.1 - 307.0 0.0 0.0 0.4 55.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000066262 Or51i1 ENSMUST00000218535 ENSMUSP00000151356 TRANSLATION protein_coding - CCDS21602.1 5 314.0 0.0 1.0 12.5 397.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025104 Hdgfl3 ENSMUST00000026094 ENSMUSP00000026094 TRANSLATION protein_coding - - 1 205.0 0.0 2.5 20.7 55.4 0.0 -4,-6 0.8768 5 12.0 ALTERNATIVE:1 ENSMUSG00000025104 Hdgfl3 ENSMUST00000149288 - NO_TRANSLATION retained_intron ENSMUSG00000025104 Hdgfl3 ENSMUST00000107305 ENSMUSP00000102926 TRANSLATION protein_coding - CCDS40011.1 1 202.0 0.0 2.5 20.7 55.4 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:4 ENSMUSG00000041560 Nop53 ENSMUST00000197477 - NO_TRANSLATION retained_intron ENSMUSG00000041560 Nop53 ENSMUST00000198688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041560 Nop53 ENSMUST00000044158 ENSMUSP00000043981 TRANSLATION protein_coding - CCDS39779.1 1 484.0 0.0 0.0 4.3 330.5 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000041560 Nop53 ENSMUST00000200455 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005547 Cyp2a5 ENSMUST00000005685 ENSMUSP00000005685 TRANSLATION protein_coding - CCDS21008.1 1 494.0 50.0 10.88 15.7 498.7 1.0 1,-3 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000005547 Cyp2a5 ENSMUST00000165641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005547 Cyp2a5 ENSMUST00000169007 ENSMUSP00000128865 TRANSLATION protein_coding start - 5 128.0 12.0 2.83 0.0 156.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005547 Cyp2a5 ENSMUST00000170631 ENSMUSP00000127829 TRANSLATION protein_coding start - 5 72.0 10.0 1.25 0.0 65.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005547 Cyp2a5 ENSMUST00000168869 ENSMUSP00000130640 TRANSLATION nonsense_mediated_decay - - 5 61.0 0.0 0.8 0.0 0.0 1.0 1,-3 0.0056 - -2.0 MINOR ENSMUSG00000078681 Tm2d3 ENSMUST00000206628 ENSMUSP00000146320 TRANSLATION protein_coding start/stop - 5 153.0 0.0 3.23 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000078681 Tm2d3 ENSMUST00000206837 ENSMUSP00000146014 TRANSLATION protein_coding start/stop - 3 84.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000078681 Tm2d3 ENSMUST00000065574 ENSMUSP00000064967 TRANSLATION protein_coding - CCDS21341.1 1 261.0 0.0 4.98 6.2 53.6 1.0 -4,-7 0.9032 2 13.752 MINOR ENSMUSG00000078681 Tm2d3 ENSMUST00000206361 ENSMUSP00000145994 TRANSLATION protein_coding start/stop - 5 145.0 0.0 3.83 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000078681 Tm2d3 ENSMUST00000206934 ENSMUSP00000145545 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000078681 Tm2d3 ENSMUST00000032726 ENSMUSP00000032726 TRANSLATION protein_coding - CCDS21340.1 1 230.0 0.0 4.98 6.5 53.6 1.0 -3,-7 0.8532 2 13.854 MINOR ENSMUSG00000078681 Tm2d3 ENSMUST00000107495 ENSMUSP00000103119 TRANSLATION protein_coding - CCDS21341.1 5 261.0 0.0 4.98 6.2 53.6 1.0 -4,-7 0.9032 2 13.752 MINOR ENSMUSG00000078681 Tm2d3 ENSMUST00000143508 ENSMUSP00000116848 TRANSLATION protein_coding stop - 3 95.0 0.0 1.9 0.0 0.0 0.0 -3,-7 0.0 1 -2.0 MINOR ENSMUSG00000078681 Tm2d3 ENSMUST00000206517 ENSMUSP00000145534 TRANSLATION protein_coding - - 5 252.0 0.0 4.98 9.9 53.6 1.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000078681 Tm2d3 ENSMUST00000129166 ENSMUSP00000146099 TRANSLATION protein_coding stop - 2 184.0 0.0 3.23 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000004473 Clec11a ENSMUST00000004587 ENSMUSP00000004587 TRANSLATION protein_coding - CCDS21203.1 1 328.0 9.0 0.864 3.9 48.0 0.0 1,-2 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000003437 Paf1 ENSMUST00000154823 - NO_TRANSLATION retained_intron ENSMUSG00000003437 Paf1 ENSMUST00000003529 ENSMUSP00000003529 TRANSLATION protein_coding - CCDS21043.1 1 535.0 0.0 7.332 0.8 504.0 0.0 -4,-7 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000003437 Paf1 ENSMUST00000146913 - NO_TRANSLATION retained_intron ENSMUSG00000003437 Paf1 ENSMUST00000146604 - NO_TRANSLATION retained_intron ENSMUSG00000003437 Paf1 ENSMUST00000146886 - NO_TRANSLATION retained_intron ENSMUSG00000003437 Paf1 ENSMUST00000152512 - NO_TRANSLATION retained_intron ENSMUSG00000003437 Paf1 ENSMUST00000122857 - NO_TRANSLATION retained_intron ENSMUSG00000003437 Paf1 ENSMUST00000145339 - NO_TRANSLATION retained_intron ENSMUSG00000003437 Paf1 ENSMUST00000132910 - NO_TRANSLATION retained_intron ENSMUSG00000003437 Paf1 ENSMUST00000143201 - NO_TRANSLATION retained_intron ENSMUSG00000038300 Pth2 ENSMUST00000042754 ENSMUSP00000041047 TRANSLATION protein_coding - CCDS21233.1 1 100.0 0.0 0.0 7.8 100.1 0.0 1,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000038300 Pth2 ENSMUST00000210086 ENSMUSP00000147367 TRANSLATION protein_coding - - 2 113.0 0.0 0.0 0.1 100.1 0.0 -2,-3 0.0565 - 6.0 MINOR ENSMUSG00000041141 Pnma8a ENSMUST00000038163 ENSMUSP00000040929 TRANSLATION protein_coding - CCDS20858.1 1 430.0 0.0 0.5 0.0 355.1 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000030653 Gm45837 ENSMUST00000084894 ENSMUSP00000081956 TRANSLATION protein_coding,RT - - 5 961.0 15.0 19.0 0.0 345.7 0.0 -4,-2 0.8663 - -2.0 PRINCIPAL:1 ENSMUSG00000034583 Or6z6 ENSMUST00000209055 ENSMUSP00000146605 TRANSLATION protein_coding stop - 3 117.0 0.0 1.0 0.0 50.2 4.0 -4,-7 0.0044 - -2.0 MINOR ENSMUSG00000034583 Or6z6 ENSMUST00000207339 ENSMUSP00000147141 TRANSLATION protein_coding - - 2 312.0 0.0 2.0 8.3 170.0 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034583 Or6z6 ENSMUST00000220413 ENSMUSP00000152024 TRANSLATION protein_coding - CCDS20779.1 - 319.0 0.0 2.0 0.3 170.0 8.0 -4,-7 0.4289 - 12.0 MINOR ENSMUSG00000034583 Or6z6 ENSMUST00000218572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034583 Or6z6 ENSMUST00000036357 ENSMUSP00000046590 TRANSLATION protein_coding - - - 312.0 0.0 2.0 8.3 170.0 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074369 Obox2 ENSMUST00000174076 ENSMUSP00000133793 TRANSLATION protein_coding - CCDS52034.1 5 151.0 0.0 0.5 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074369 Obox2 ENSMUST00000174305 ENSMUSP00000134275 TRANSLATION protein_coding - CCDS52034.1 5 151.0 0.0 0.5 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074369 Obox2 ENSMUST00000172478 ENSMUSP00000133450 TRANSLATION protein_coding - CCDS52034.1 5 151.0 0.0 0.5 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074369 Obox2 ENSMUST00000036575 ENSMUSP00000042995 TRANSLATION protein_coding - CCDS52034.1 1 151.0 0.0 0.5 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000053111 Fank1 ENSMUST00000121560 ENSMUSP00000114136 TRANSLATION protein_coding - - 5 126.0 0.0 1.33 0.0 0.0 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000053111 Fank1 ENSMUST00000151031 ENSMUSP00000119929 TRANSLATION protein_coding stop - 3 152.0 0.0 4.41 0.0 51.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053111 Fank1 ENSMUST00000065359 ENSMUSP00000069013 TRANSLATION protein_coding - CCDS21937.1 1 344.0 0.0 9.01 5.9 101.5 0.0 -4,-6 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000053111 Fank1 ENSMUST00000211077 ENSMUSP00000147559 TRANSLATION protein_coding stop - 3 96.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053111 Fank1 ENSMUST00000209511 ENSMUSP00000147964 TRANSLATION protein_coding - - 5 343.0 0.0 9.01 0.3 101.5 0.0 -4,-6 0.2692 2 12.0 MINOR ENSMUSG00000030413 Pglyrp1 ENSMUST00000032573 ENSMUSP00000032573 TRANSLATION protein_coding - CCDS20881.1 1 182.0 0.0 3.0 0.1 67.7 0.0 2,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000030413 Pglyrp1 ENSMUST00000206481 - NO_TRANSLATION retained_intron ENSMUSG00000030413 Pglyrp1 ENSMUST00000206569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030413 Pglyrp1 ENSMUST00000206206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006307 Kmt2b ENSMUST00000108154 ENSMUSP00000103789 TRANSLATION protein_coding - CCDS21101.1 1 2713.0 41.0 10.318 0.0 369.4 0.0 -4,-7 1.0 20 14.0 PRINCIPAL:2 ENSMUSG00000006307 Kmt2b ENSMUST00000006470 ENSMUSP00000006470 TRANSLATION protein_coding - - 5 2721.0 41.0 10.318 0.0 369.4 0.0 -4,-7 0.5231 20 14.0 ALTERNATIVE:2 ENSMUSG00000006307 Kmt2b ENSMUST00000125836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006307 Kmt2b ENSMUST00000128456 - NO_TRANSLATION retained_intron ENSMUSG00000006307 Kmt2b ENSMUST00000152931 - NO_TRANSLATION retained_intron ENSMUSG00000006307 Kmt2b ENSMUST00000131002 ENSMUSP00000118486 TRANSLATION protein_coding start - 1 2014.0 41.0 10.318 0.0 369.4 0.0 -4,-6 0.3666 14 -2.0 MINOR ENSMUSG00000006307 Kmt2b ENSMUST00000125372 - NO_TRANSLATION retained_intron ENSMUSG00000006307 Kmt2b ENSMUST00000136959 - NO_TRANSLATION retained_intron ENSMUSG00000070550 Mrgprb4 ENSMUST00000094388 ENSMUSP00000091952 TRANSLATION protein_coding - CCDS21301.1 - 321.0 0.0 1.0 1.1 41.4 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000048481 Mypop ENSMUST00000130268 - NO_TRANSLATION retained_intron ENSMUSG00000048481 Mypop ENSMUST00000131087 ENSMUSP00000117357 TRANSLATION protein_coding - CCDS39792.1 5 393.0 0.0 0.0 0.0 69.0 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000048481 Mypop ENSMUST00000059331 ENSMUSP00000058718 TRANSLATION protein_coding - CCDS39792.1 5 393.0 0.0 0.0 0.0 69.0 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000038563 Efl1 ENSMUST00000207868 ENSMUSP00000146350 TRANSLATION protein_coding - - 3 103.0 8.0 2.5 0.0 73.2 0.0 -4,-6 0.0 1 3.336 MINOR ENSMUSG00000038563 Efl1 ENSMUST00000179489 ENSMUSP00000137061 TRANSLATION protein_coding - CCDS21410.1 1 1127.0 12.0 18.58 7.8 303.0 0.0 -4,-6 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000038563 Efl1 ENSMUST00000153265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038563 Efl1 ENSMUST00000039881 ENSMUSP00000046046 TRANSLATION protein_coding - CCDS21410.1 1 1127.0 12.0 18.58 7.8 303.0 0.0 -4,-6 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000038563 Efl1 ENSMUST00000125245 - NO_TRANSLATION retained_intron ENSMUSG00000038563 Efl1 ENSMUST00000141726 ENSMUSP00000121909 TRANSLATION protein_coding stop - 3 234.0 12.0 5.5 0.0 200.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000013353 4931406B18Rik ENSMUST00000163474 ENSMUSP00000126619 TRANSLATION protein_coding - - 5 241.0 0.0 0.3 0.0 0.0 1.0 1,-3 0.1038 - 3.27 MINOR ENSMUSG00000013353 4931406B18Rik ENSMUST00000168213 ENSMUSP00000129928 TRANSLATION nonsense_mediated_decay - - 1 130.0 0.0 0.3 0.0 0.0 0.0 1,-3 0.0856 - -2.0 MINOR ENSMUSG00000013353 4931406B18Rik ENSMUST00000013497 ENSMUSP00000013497 TRANSLATION protein_coding - CCDS21172.1 1 367.0 0.0 0.55 0.0 0.0 2.0 1,-3 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000013353 4931406B18Rik ENSMUST00000168883 ENSMUSP00000129976 TRANSLATION protein_coding stop - 5 36.0 0.0 0.3 0.0 0.0 0.0 1,-3 0.0856 - -2.0 MINOR ENSMUSG00000013353 4931406B18Rik ENSMUST00000191516 ENSMUSP00000139468 TRANSLATION protein_coding - CCDS21172.1 1 367.0 0.0 0.55 0.0 0.0 2.0 1,-3 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000013353 4931406B18Rik ENSMUST00000168636 - NO_TRANSLATION retained_intron ENSMUSG00000013353 4931406B18Rik ENSMUST00000171174 ENSMUSP00000129888 TRANSLATION nonsense_mediated_decay - CCDS21172.1 1 367.0 0.0 0.55 0.0 0.0 2.0 1,-3 1.0 - -2.0 MINOR ENSMUSG00000013353 4931406B18Rik ENSMUST00000163619 ENSMUSP00000131071 TRANSLATION protein_coding - - 1 117.0 0.0 0.5 0.0 0.0 0.0 1,-3 0.0939 - 5.454 ALTERNATIVE:2 ENSMUSG00000090383 Vmn2r58 ENSMUST00000233389 ENSMUSP00000156834 TRANSLATION nonsense_mediated_decay - - - 91.0 0.0 0.2 0.0 0.0 0.0 2,-3 0.0022 - -2.0 MINOR ENSMUSG00000090383 Vmn2r58 ENSMUST00000233081 ENSMUSP00000156803 TRANSLATION protein_coding - - - 517.0 0.0 1.58 0.0 132.4 0.0 2,-3 0.0012 - 3.18 MINOR ENSMUSG00000090383 Vmn2r58 ENSMUST00000233147 ENSMUSP00000156405 TRANSLATION nonsense_mediated_decay - - - 72.0 0.0 0.2 0.0 0.0 0.0 2,-3 0.0022 - -2.0 MINOR ENSMUSG00000090383 Vmn2r58 ENSMUST00000232976 - NO_TRANSLATION retained_intron ENSMUSG00000090383 Vmn2r58 ENSMUST00000233177 ENSMUSP00000156783 TRANSLATION nonsense_mediated_decay - - - 524.0 0.0 1.58 0.0 132.4 0.0 2,-3 0.0012 - -2.0 MINOR ENSMUSG00000090383 Vmn2r58 ENSMUST00000171671 ENSMUSP00000126966 TRANSLATION protein_coding - CCDS52212.1 5 862.0 0.0 2.98 0.0 396.7 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000090383 Vmn2r58 ENSMUST00000233957 ENSMUSP00000156760 TRANSLATION nonsense_mediated_decay - - - 72.0 0.0 0.2 0.0 0.0 0.0 2,-3 0.0022 - -2.0 MINOR ENSMUSG00000036647 Or6b9 ENSMUST00000040983 ENSMUSP00000048740 TRANSLATION protein_coding - CCDS21681.1 5 316.0 0.0 1.0 9.0 190.6 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036647 Or6b9 ENSMUST00000213552 ENSMUSP00000149346 TRANSLATION protein_coding - CCDS21681.1 5 316.0 0.0 1.0 9.0 190.6 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036647 Or6b9 ENSMUST00000213651 ENSMUSP00000149919 TRANSLATION protein_coding - CCDS21681.1 5 316.0 0.0 1.0 9.0 190.6 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036647 Or6b9 ENSMUST00000219365 ENSMUSP00000151272 TRANSLATION protein_coding - CCDS21681.1 - 316.0 0.0 1.0 9.0 190.6 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096761 Vmn1r245 ENSMUST00000173886 ENSMUSP00000133606 TRANSLATION protein_coding - CCDS71899.1 - 307.0 0.0 0.0 0.4 54.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000025484 Bet1l ENSMUST00000026557 ENSMUSP00000026557 TRANSLATION protein_coding - CCDS21987.1 1 111.0 0.0 2.66 26.3 0.0 1.0 -4,-5 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000025484 Bet1l ENSMUST00000210157 - NO_TRANSLATION retained_intron ENSMUSG00000025484 Bet1l ENSMUST00000210195 - NO_TRANSLATION retained_intron ENSMUSG00000025484 Bet1l ENSMUST00000209318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025484 Bet1l ENSMUST00000211590 ENSMUSP00000147377 TRANSLATION protein_coding stop - 5 115.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0389 1 -2.0 MINOR ENSMUSG00000025484 Bet1l ENSMUST00000210710 ENSMUSP00000147378 TRANSLATION protein_coding stop - 3 47.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0023 1 -2.0 MINOR ENSMUSG00000025484 Bet1l ENSMUST00000211624 ENSMUSP00000147264 TRANSLATION protein_coding - - 3 88.0 0.0 2.16 0.0 0.0 1.0 -4,-7 0.0166 1 4.872 MINOR ENSMUSG00000025484 Bet1l ENSMUST00000211527 ENSMUSP00000147777 TRANSLATION protein_coding - - 5 92.0 0.0 2.0 1.1 0.0 1.0 -4,-5 0.0609 1 4.528 MINOR ENSMUSG00000025484 Bet1l ENSMUST00000209320 ENSMUSP00000147913 TRANSLATION nonsense_mediated_decay - - 2 49.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0023 1 -2.0 MINOR ENSMUSG00000058743 Kcnj14 ENSMUST00000210232 ENSMUSP00000147448 TRANSLATION protein_coding stop - 3 169.0 0.0 1.0 0.0 168.4 1.0 -4,-1 0.0016 - -2.0 MINOR ENSMUSG00000058743 Kcnj14 ENSMUST00000071937 ENSMUSP00000071829 TRANSLATION protein_coding - CCDS21265.1 1 434.0 0.0 3.0 7.8 480.2 2.0 -4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030796 Tead2 ENSMUST00000209478 ENSMUSP00000147288 TRANSLATION protein_coding start - 5 129.0 0.0 3.63 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000030796 Tead2 ENSMUST00000210814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030796 Tead2 ENSMUST00000033060 ENSMUSP00000033060 TRANSLATION protein_coding - CCDS21236.1 1 445.0 0.0 9.474 7.6 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000030796 Tead2 ENSMUST00000211138 - NO_TRANSLATION retained_intron ENSMUSG00000030796 Tead2 ENSMUST00000210570 - NO_TRANSLATION retained_intron ENSMUSG00000030796 Tead2 ENSMUST00000097216 ENSMUSP00000103430 TRANSLATION protein_coding - CCDS71957.1 1 410.0 0.0 8.474 0.0 0.0 0.0 -4,-5 0.0674 - 4.002 MINOR ENSMUSG00000030796 Tead2 ENSMUST00000107801 ENSMUSP00000103431 TRANSLATION protein_coding - CCDS21236.1 1 445.0 0.0 9.474 7.6 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000030796 Tead2 ENSMUST00000211778 - NO_TRANSLATION retained_intron ENSMUSG00000030796 Tead2 ENSMUST00000209343 ENSMUSP00000147746 TRANSLATION protein_coding stop - 5 184.0 0.0 3.344 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000030796 Tead2 ENSMUST00000211744 ENSMUSP00000147727 TRANSLATION protein_coding stop - 5 175.0 0.0 3.344 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000030796 Tead2 ENSMUST00000209678 ENSMUSP00000147321 TRANSLATION protein_coding start/stop - 2 129.0 0.0 2.344 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000030796 Tead2 ENSMUST00000211594 - NO_TRANSLATION retained_intron ENSMUSG00000030796 Tead2 ENSMUST00000209818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030796 Tead2 ENSMUST00000209708 - NO_TRANSLATION retained_intron ENSMUSG00000030796 Tead2 ENSMUST00000209222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030796 Tead2 ENSMUST00000210447 ENSMUSP00000148183 TRANSLATION protein_coding stop - 5 245.0 0.0 4.344 0.0 0.0 0.0 -4,-5 0.0062 - -2.0 MINOR ENSMUSG00000030796 Tead2 ENSMUST00000209437 ENSMUSP00000148005 TRANSLATION protein_coding stop - 3 107.0 0.0 2.344 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000004612 Nkg7 ENSMUST00000206741 ENSMUSP00000146071 TRANSLATION protein_coding - - 1 120.0 0.0 0.665 0.0 0.0 2.0 0,-3 0.0025 - 2.724 MINOR ENSMUSG00000004612 Nkg7 ENSMUST00000070518 ENSMUSP00000068946 TRANSLATION protein_coding - CCDS21169.1 1 165.0 0.0 1.465 9.0 45.8 4.0 0,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004612 Nkg7 ENSMUST00000206251 - NO_TRANSLATION retained_intron ENSMUSG00000044139 Prss53 ENSMUST00000121394 ENSMUSP00000112972 TRANSLATION protein_coding - CCDS52409.1 1 552.0 12.0 3.865 6.7 274.4 0.0 0,-2 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000044139 Prss53 ENSMUST00000205300 ENSMUSP00000145763 TRANSLATION protein_coding - - 1 482.0 9.0 3.265 0.0 233.4 0.0 0,-2 0.0006 3 12.342 MINOR ENSMUSG00000058454 Dhcr7 ENSMUST00000124340 ENSMUSP00000117659 TRANSLATION protein_coding - CCDS22048.1 5 471.0 0.0 7.66 15.8 307.6 11.0 -4,-2 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000058454 Dhcr7 ENSMUST00000143338 ENSMUSP00000119984 TRANSLATION protein_coding stop - 5 215.0 0.0 4.66 0.0 0.0 9.0 -4,-2 0.0023 2 -2.0 MINOR ENSMUSG00000058454 Dhcr7 ENSMUST00000144034 ENSMUSP00000118957 TRANSLATION protein_coding stop - 3 225.0 0.0 4.66 0.0 112.3 5.0 -4,-7 0.0029 1 -2.0 MINOR ENSMUSG00000058454 Dhcr7 ENSMUST00000128610 - NO_TRANSLATION retained_intron ENSMUSG00000058454 Dhcr7 ENSMUST00000145471 ENSMUSP00000146937 TRANSLATION nonsense_mediated_decay start - 3 23.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058454 Dhcr7 ENSMUST00000208631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058454 Dhcr7 ENSMUST00000125564 ENSMUSP00000146636 TRANSLATION protein_coding stop - 3 71.0 0.0 1.0 0.0 0.0 4.0 -4,-7 0.0023 - -2.0 MINOR ENSMUSG00000058454 Dhcr7 ENSMUST00000139748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058454 Dhcr7 ENSMUST00000207143 ENSMUSP00000146947 TRANSLATION protein_coding - - 5 474.0 0.0 7.66 15.8 307.6 11.0 -4,-2 0.8763 5 10.0 ALTERNATIVE:1 ENSMUSG00000058454 Dhcr7 ENSMUST00000141916 ENSMUSP00000121782 TRANSLATION protein_coding - CCDS22048.1 5 471.0 0.0 7.66 15.8 307.6 11.0 -4,-2 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000058454 Dhcr7 ENSMUST00000073878 ENSMUSP00000073541 TRANSLATION protein_coding - CCDS22048.1 5 471.0 0.0 7.66 15.8 307.6 11.0 -4,-2 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000058454 Dhcr7 ENSMUST00000208535 - NO_TRANSLATION retained_intron ENSMUSG00000058454 Dhcr7 ENSMUST00000128454 ENSMUSP00000119855 TRANSLATION protein_coding stop - 1 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035211 Xrra1 ENSMUST00000208270 - NO_TRANSLATION retained_intron ENSMUSG00000035211 Xrra1 ENSMUST00000248072 ENSMUSP00000159540 TRANSLATION protein_coding - - - 845.0 0.0 3.6275 0.0 0.0 0.0 -4,-2 0.148 - 6.0 ALTERNATIVE:2 ENSMUSG00000035211 Xrra1 ENSMUST00000208449 - NO_TRANSLATION retained_intron ENSMUSG00000035211 Xrra1 ENSMUST00000208354 ENSMUSP00000146815 TRANSLATION nonsense_mediated_decay - - 5 129.0 0.0 0.475 0.0 0.0 0.0 -4,-5 0.0085 - -2.0 MINOR ENSMUSG00000035211 Xrra1 ENSMUST00000036155 ENSMUSP00000035929 TRANSLATION protein_coding - CCDS52321.1 1 786.0 0.0 3.6275 0.4 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000035211 Xrra1 ENSMUST00000207855 ENSMUSP00000147177 TRANSLATION protein_coding - - 5 361.0 0.0 2.8625 0.0 0.0 0.0 -4,-5 0.0184 - 4.47 MINOR ENSMUSG00000041328 Pcf11 ENSMUST00000151177 ENSMUSP00000115278 TRANSLATION protein_coding start - 5 1476.0 8.0 1.05 0.0 0.0 0.0 -4,-5 0.0333 19 -2.0 MINOR ENSMUSG00000041328 Pcf11 ENSMUST00000119954 ENSMUSP00000113717 TRANSLATION protein_coding - CCDS52311.1 1 1553.0 8.0 2.41 6.8 28.3 0.0 -4,-5 1.0 25 20.0 PRINCIPAL:1 ENSMUSG00000041328 Pcf11 ENSMUST00000208255 ENSMUSP00000146885 TRANSLATION protein_coding - - - 78.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 1 1.494 MINOR ENSMUSG00000041328 Pcf11 ENSMUST00000208058 ENSMUSP00000146556 TRANSLATION protein_coding - - 5 78.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 1 1.494 MINOR ENSMUSG00000041328 Pcf11 ENSMUST00000148539 - NO_TRANSLATION retained_intron ENSMUSG00000053898 Ech1 ENSMUST00000137834 - NO_TRANSLATION retained_intron ENSMUSG00000053898 Ech1 ENSMUST00000124017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053898 Ech1 ENSMUST00000066264 ENSMUSP00000066092 TRANSLATION protein_coding - CCDS21057.1 1 327.0 16.0 7.83 1.4 163.5 0.0 -4,0 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000053898 Ech1 ENSMUST00000127590 - NO_TRANSLATION retained_intron ENSMUSG00000053898 Ech1 ENSMUST00000143708 - NO_TRANSLATION retained_intron ENSMUSG00000053898 Ech1 ENSMUST00000154839 - NO_TRANSLATION retained_intron ENSMUSG00000053898 Ech1 ENSMUST00000132376 ENSMUSP00000116992 TRANSLATION protein_coding start - 5 177.0 3.0 5.0 0.0 80.9 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000036854 Hspb6 ENSMUST00000123355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036854 Hspb6 ENSMUST00000146732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036854 Hspb6 ENSMUST00000126989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036854 Hspb6 ENSMUST00000044048 ENSMUSP00000039172 TRANSLATION protein_coding - CCDS21097.1 1 162.0 0.0 2.4 3.0 145.4 0.0 -4,-2 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000064194 Zfp936 ENSMUST00000202535 ENSMUSP00000143800 TRANSLATION protein_coding - CCDS80709.1 1 456.0 44.0 3.35 0.0 261.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000064194 Zfp936 ENSMUST00000200973 ENSMUSP00000144191 TRANSLATION protein_coding - - 3 86.0 0.0 1.75 0.0 82.1 0.0 -4,-5 0.0 - 2.802 MINOR ENSMUSG00000064194 Zfp936 ENSMUST00000205912 ENSMUSP00000145999 TRANSLATION protein_coding stop - 3 181.0 5.0 2.25 0.0 82.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000064194 Zfp936 ENSMUST00000072829 ENSMUSP00000072608 TRANSLATION protein_coding start - 5 455.0 44.0 3.35 0.0 261.0 0.0 -4,-5 0.4276 - -2.0 MINOR ENSMUSG00000063120 Or5p57 ENSMUST00000217653 ENSMUSP00000149301 TRANSLATION protein_coding - - 3 312.0 0.0 1.0 10.4 169.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048170 Mcmbp ENSMUST00000140714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048170 Mcmbp ENSMUST00000119081 ENSMUSP00000113961 TRANSLATION protein_coding - - 1 660.0 0.0 0.0 0.0 687.9 0.0 -4,-6 0.0541 6 0.324 MINOR ENSMUSG00000048170 Mcmbp ENSMUST00000057557 ENSMUSP00000062843 TRANSLATION protein_coding - CCDS40153.1 1 642.0 0.0 0.0 16.8 782.5 0.0 -4,-6 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000048170 Mcmbp ENSMUST00000127807 - NO_TRANSLATION retained_intron ENSMUSG00000048170 Mcmbp ENSMUST00000146352 - NO_TRANSLATION retained_intron ENSMUSG00000030380 Mzf1 ENSMUST00000183176 - NO_TRANSLATION retained_intron ENSMUSG00000030380 Mzf1 ENSMUST00000210727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030380 Mzf1 ENSMUST00000182490 ENSMUSP00000138271 TRANSLATION protein_coding - - 1 814.0 52.0 1.8 0.0 375.6 0.0 -4,-2 0.1206 - 18.0 MINOR ENSMUSG00000030380 Mzf1 ENSMUST00000182515 ENSMUSP00000138387 TRANSLATION protein_coding - CCDS20826.1 1 735.0 52.0 1.8 4.2 375.6 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000030380 Mzf1 ENSMUST00000182087 ENSMUSP00000138163 TRANSLATION protein_coding - - 1 190.0 0.0 1.0 0.0 123.0 0.0 -4,-5 0.0 - 3.336 MINOR ENSMUSG00000030380 Mzf1 ENSMUST00000069289 ENSMUSP00000069122 TRANSLATION protein_coding - - 1 320.0 0.0 1.0 0.0 123.0 0.0 -4,-5 0.0008 - 3.336 MINOR ENSMUSG00000030380 Mzf1 ENSMUST00000182293 - NO_TRANSLATION retained_intron ENSMUSG00000002083 Bbc3 ENSMUST00000136781 ENSMUSP00000119225 TRANSLATION protein_coding stop - 3 128.0 0.0 0.0 0.0 165.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000002083 Bbc3 ENSMUST00000002152 ENSMUSP00000002152 TRANSLATION protein_coding - CCDS20847.1 1 193.0 0.0 1.75 5.4 310.5 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000002083 Bbc3 ENSMUST00000147267 - NO_TRANSLATION retained_intron ENSMUSG00000002083 Bbc3 ENSMUST00000209688 ENSMUSP00000147422 TRANSLATION protein_coding stop - 3 91.0 0.0 0.0 0.0 124.2 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000049280 Or10ab5 ENSMUST00000215075 ENSMUSP00000150157 TRANSLATION protein_coding - CCDS21723.1 5 321.0 0.0 1.0 4.2 144.1 7.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049280 Or10ab5 ENSMUST00000061690 ENSMUSP00000053819 TRANSLATION protein_coding - CCDS21723.1 - 321.0 0.0 1.0 4.2 144.1 7.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049280 Or10ab5 ENSMUST00000213756 ENSMUSP00000149663 TRANSLATION protein_coding - CCDS21723.1 5 321.0 0.0 1.0 4.2 144.1 7.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049280 Or10ab5 ENSMUST00000214861 ENSMUSP00000149575 TRANSLATION protein_coding - CCDS21723.1 5 321.0 0.0 1.0 4.2 144.1 7.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030410 Dmwd ENSMUST00000138997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030410 Dmwd ENSMUST00000108479 ENSMUSP00000104119 TRANSLATION protein_coding - - 5 640.0 0.0 0.8 1.0 34.0 0.0 -4,-5 0.3192 11 8.0 ALTERNATIVE:2 ENSMUSG00000030410 Dmwd ENSMUST00000146429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030410 Dmwd ENSMUST00000032570 ENSMUSP00000032570 TRANSLATION protein_coding - CCDS20888.2 1 665.0 0.0 0.8 2.1 34.0 0.0 -4,-5 1.0 12 9.0 PRINCIPAL:2 ENSMUSG00000051727 Kctd14 ENSMUST00000121987 ENSMUSP00000113765 TRANSLATION protein_coding - - 1 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000051727 Kctd14 ENSMUST00000205577 ENSMUSP00000145727 TRANSLATION protein_coding - CCDS85342.1 1 234.0 0.0 1.0 0.0 57.0 0.0 -4,-5 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000051727 Kctd14 ENSMUST00000206658 ENSMUSP00000145558 TRANSLATION protein_coding - CCDS21459.2 3 287.0 0.0 1.0 0.0 57.0 0.0 -4,-7 0.3331 7 8.0 ALTERNATIVE:2 ENSMUSG00000051727 Kctd14 ENSMUST00000050732 ENSMUSP00000060557 TRANSLATION protein_coding - CCDS85342.1 1 234.0 0.0 1.0 0.0 57.0 0.0 -4,-5 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000051727 Kctd14 ENSMUST00000143321 ENSMUSP00000146081 TRANSLATION nonsense_mediated_decay - - 1 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000051727 Kctd14 ENSMUST00000206279 ENSMUSP00000145977 TRANSLATION protein_coding - - 2 266.0 0.0 1.0 0.1 57.0 0.0 -4,-5 0.0582 7 8.0 ALTERNATIVE:2 ENSMUSG00000037469 Acp7 ENSMUST00000159560 ENSMUSP00000147133 TRANSLATION protein_coding - - 3 438.0 9.0 10.83 3.2 223.7 0.0 4,-1 1.0 3 15.0 PRINCIPAL:2 ENSMUSG00000037469 Acp7 ENSMUST00000162880 ENSMUSP00000146604 TRANSLATION protein_coding stop - 3 18.0 0.0 0.0 0.0 0.0 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000037469 Acp7 ENSMUST00000159418 ENSMUSP00000146369 TRANSLATION protein_coding stop - 3 140.0 0.0 2.33 0.0 67.0 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000037469 Acp7 ENSMUST00000040112 ENSMUSP00000045437 TRANSLATION protein_coding - CCDS21050.1 1 496.0 9.0 10.83 0.0 223.7 0.0 -4,-6 0.1091 3 14.0 ALTERNATIVE:2 ENSMUSG00000037469 Acp7 ENSMUST00000239470 ENSMUSP00000159320 TRANSLATION protein_coding - - - 438.0 9.0 10.83 3.2 223.7 0.0 4,-1 1.0 3 15.0 PRINCIPAL:2 ENSMUSG00000037469 Acp7 ENSMUST00000159095 ENSMUSP00000146753 TRANSLATION protein_coding stop - 3 29.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0014 - -2.0 MINOR ENSMUSG00000030403 Vasp ENSMUST00000206229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030403 Vasp ENSMUST00000162717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030403 Vasp ENSMUST00000032561 ENSMUSP00000032561 TRANSLATION protein_coding - CCDS52056.1 1 375.0 0.0 3.68 7.3 186.8 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000030403 Vasp ENSMUST00000161488 - NO_TRANSLATION retained_intron ENSMUSG00000066101 Gm10153 ENSMUST00000210290 ENSMUSP00000147568 TRANSLATION protein_coding - - - 320.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6061 - 0.0 PRINCIPAL:1 ENSMUSG00000073917 Or52n3 ENSMUST00000216257 ENSMUSP00000150283 TRANSLATION protein_coding - CCDS21630.1 5 316.0 0.0 1.0 9.8 349.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073917 Or52n3 ENSMUST00000098165 ENSMUSP00000095768 TRANSLATION protein_coding - CCDS21630.1 - 316.0 0.0 1.0 9.8 349.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073917 Or52n3 ENSMUST00000215761 ENSMUSP00000150603 TRANSLATION protein_coding - CCDS21630.1 5 316.0 0.0 1.0 9.8 349.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073917 Or52n3 ENSMUST00000216971 ENSMUSP00000150229 TRANSLATION protein_coding - CCDS21630.1 5 316.0 0.0 1.0 9.8 349.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056592 Zfp658 ENSMUST00000107972 ENSMUSP00000103606 TRANSLATION protein_coding - CCDS39931.1 1 887.0 87.0 0.6 0.1 490.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000056592 Zfp658 ENSMUST00000005597 ENSMUSP00000005597 TRANSLATION protein_coding - CCDS39931.1 1 887.0 87.0 0.6 0.1 490.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000055978 Fut2 ENSMUST00000210470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055978 Fut2 ENSMUST00000210620 ENSMUSP00000147471 TRANSLATION protein_coding stop - 2 118.0 0.0 0.8 0.0 71.2 1.0 -2,-5 0.0016 3 -2.0 MINOR ENSMUSG00000055978 Fut2 ENSMUST00000209759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055978 Fut2 ENSMUST00000069800 ENSMUSP00000063719 TRANSLATION protein_coding - CCDS21258.1 1 347.0 0.0 1.8 4.2 454.7 1.0 -2,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000055978 Fut2 ENSMUST00000211324 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066803 Vmn1r84 ENSMUST00000226408 ENSMUSP00000154574 TRANSLATION protein_coding - - - 306.0 0.0 0.0 0.1 74.2 9.0 -4,-6 0.7139 - 2.0 PRINCIPAL:2 ENSMUSG00000066803 Vmn1r84 ENSMUST00000227427 ENSMUSP00000154289 TRANSLATION protein_coding - - - 306.0 0.0 0.0 0.1 74.2 9.0 -4,-6 0.7139 - 2.0 PRINCIPAL:2 ENSMUSG00000066803 Vmn1r84 ENSMUST00000226811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066803 Vmn1r84 ENSMUST00000228741 - NO_TRANSLATION retained_intron ENSMUSG00000066803 Vmn1r84 ENSMUST00000086228 ENSMUSP00000083405 TRANSLATION protein_coding - CCDS20808.1 - 318.0 0.0 0.0 0.1 74.2 9.0 -4,-7 0.3676 - 2.0 ALTERNATIVE:2 ENSMUSG00000066803 Vmn1r84 ENSMUST00000228653 ENSMUSP00000154484 TRANSLATION protein_coding - - - 306.0 0.0 0.0 0.1 74.2 9.0 -4,-6 0.7139 - 2.0 PRINCIPAL:2 ENSMUSG00000045251 Zfp688 ENSMUST00000136123 - NO_TRANSLATION retained_intron ENSMUSG00000045251 Zfp688 ENSMUST00000126756 ENSMUSP00000119731 TRANSLATION protein_coding start/stop - 2 113.0 3.0 0.82 0.0 25.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045251 Zfp688 ENSMUST00000148483 ENSMUSP00000145670 TRANSLATION nonsense_mediated_decay - - 5 92.0 0.0 1.3 0.0 75.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000045251 Zfp688 ENSMUST00000135886 - NO_TRANSLATION retained_intron ENSMUSG00000045251 Zfp688 ENSMUST00000129038 ENSMUSP00000146001 TRANSLATION nonsense_mediated_decay start - 2 80.0 0.0 1.3 0.0 75.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000045251 Zfp688 ENSMUST00000106300 ENSMUSP00000101907 TRANSLATION protein_coding - CCDS21866.2 2 274.0 8.0 3.02 4.9 117.1 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000041375 Ccdc9 ENSMUST00000145519 ENSMUSP00000119694 TRANSLATION protein_coding stop - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041375 Ccdc9 ENSMUST00000041010 ENSMUSP00000035597 TRANSLATION protein_coding - - 1 543.0 0.0 0.0 0.1 195.9 0.0 -4,-5 0.0899 7 2.0 ALTERNATIVE:2 ENSMUSG00000041375 Ccdc9 ENSMUST00000124084 - NO_TRANSLATION retained_intron ENSMUSG00000041375 Ccdc9 ENSMUST00000137993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041375 Ccdc9 ENSMUST00000144186 - NO_TRANSLATION retained_intron ENSMUSG00000041375 Ccdc9 ENSMUST00000146085 ENSMUSP00000134049 TRANSLATION protein_coding start/stop - 5 182.0 0.0 0.0 0.0 58.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041375 Ccdc9 ENSMUST00000118976 ENSMUSP00000114088 TRANSLATION protein_coding - - 1 588.0 0.0 0.0 0.0 195.9 0.0 -4,-5 0.7591 8 2.0 PRINCIPAL:2 ENSMUSG00000041375 Ccdc9 ENSMUST00000146609 ENSMUSP00000134106 TRANSLATION protein_coding stop - 3 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0135 - -2.0 MINOR ENSMUSG00000041375 Ccdc9 ENSMUST00000148741 ENSMUSP00000122708 TRANSLATION nonsense_mediated_decay - - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041375 Ccdc9 ENSMUST00000174270 ENSMUSP00000133798 TRANSLATION protein_coding stop - 5 98.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000041375 Ccdc9 ENSMUST00000172670 - NO_TRANSLATION retained_intron ENSMUSG00000041375 Ccdc9 ENSMUST00000129447 - NO_TRANSLATION retained_intron ENSMUSG00000041375 Ccdc9 ENSMUST00000150528 ENSMUSP00000133863 TRANSLATION protein_coding stop - 5 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041375 Ccdc9 ENSMUST00000131963 - NO_TRANSLATION retained_intron ENSMUSG00000048330 Ric3 ENSMUST00000129629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048330 Ric3 ENSMUST00000147580 ENSMUSP00000116669 TRANSLATION nonsense_mediated_decay start - 1 22.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000048330 Ric3 ENSMUST00000133876 - NO_TRANSLATION retained_intron ENSMUSG00000048330 Ric3 ENSMUST00000120876 ENSMUSP00000112788 TRANSLATION protein_coding - CCDS80778.1 1 366.0 0.0 0.0 8.1 125.2 0.0 0,-3 1.0 3 5.0 PRINCIPAL:4 ENSMUSG00000048330 Ric3 ENSMUST00000055993 ENSMUSP00000056990 TRANSLATION protein_coding - CCDS21733.1 1 367.0 0.0 0.0 7.2 125.2 0.0 0,-3 0.9613 3 4.619 ALTERNATIVE:1 ENSMUSG00000048330 Ric3 ENSMUST00000137385 - NO_TRANSLATION retained_intron ENSMUSG00000030731 Syt3 ENSMUST00000130707 ENSMUSP00000116926 TRANSLATION protein_coding stop - 2 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030731 Syt3 ENSMUST00000130844 ENSMUSP00000118158 TRANSLATION protein_coding stop - 2 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030731 Syt3 ENSMUST00000120262 ENSMUSP00000112968 TRANSLATION protein_coding - CCDS21205.1 5 587.0 18.0 5.175 7.1 171.7 1.0 -4,-7 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000030731 Syt3 ENSMUST00000132399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030731 Syt3 ENSMUST00000118962 ENSMUSP00000114070 TRANSLATION protein_coding - CCDS21205.1 5 587.0 18.0 5.175 7.1 171.7 1.0 -4,-7 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000030731 Syt3 ENSMUST00000118831 ENSMUSP00000112432 TRANSLATION protein_coding - CCDS21205.1 5 587.0 18.0 5.175 7.1 171.7 1.0 -4,-7 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000030739 Myh14 ENSMUST00000209024 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030739 Myh14 ENSMUST00000107899 ENSMUSP00000103531 TRANSLATION protein_coding - CCDS39943.1 1 1992.0 18.0 30.453 1.0 2484.0 0.0 -4,-1 1.0 80 13.67 ALTERNATIVE:2 ENSMUSG00000030739 Myh14 ENSMUST00000048102 ENSMUSP00000046059 TRANSLATION protein_coding - CCDS71951.1 1 2000.0 18.0 30.618 1.0 2485.4 0.0 -4,-1 0.9032 82 13.5 PRINCIPAL:3 ENSMUSG00000030739 Myh14 ENSMUST00000208044 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030739 Myh14 ENSMUST00000208131 ENSMUSP00000146584 TRANSLATION protein_coding stop - 2 120.0 0.0 1.0 0.0 26.4 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000030739 Myh14 ENSMUST00000208085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030739 Myh14 ENSMUST00000207775 ENSMUSP00000147115 TRANSLATION protein_coding - - 5 2033.0 18.0 30.519 0.0 2472.3 0.0 -4,-1 0.4125 80 13.302 ALTERNATIVE:2 ENSMUSG00000030739 Myh14 ENSMUST00000208200 ENSMUSP00000146686 TRANSLATION protein_coding start - 1 1245.0 2.0 18.445 0.0 1145.0 0.0 -4,-5 0.1091 54 -2.0 MINOR ENSMUSG00000014418 Hps5 ENSMUST00000107654 ENSMUSP00000103281 TRANSLATION protein_coding - CCDS21286.1 5 1126.0 0.0 3.5 9.1 0.0 0.0 -4,-6 1.0 15 9.0 PRINCIPAL:1 ENSMUSG00000014418 Hps5 ENSMUST00000145776 - NO_TRANSLATION retained_intron ENSMUSG00000014418 Hps5 ENSMUST00000014562 ENSMUSP00000014562 TRANSLATION protein_coding - CCDS21286.1 1 1126.0 0.0 3.5 9.1 0.0 0.0 -4,-6 1.0 15 9.0 PRINCIPAL:1 ENSMUSG00000014418 Hps5 ENSMUST00000211571 ENSMUSP00000147406 TRANSLATION protein_coding start - 5 134.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0086 - -2.0 MINOR ENSMUSG00000014418 Hps5 ENSMUST00000142663 ENSMUSP00000122887 TRANSLATION nonsense_mediated_decay - - 1 526.0 0.0 3.5 0.0 0.0 0.0 -4,-6 0.0407 7 -2.0 MINOR ENSMUSG00000014418 Hps5 ENSMUST00000123725 ENSMUSP00000116770 TRANSLATION protein_coding stop - 2 119.0 0.0 2.5 0.0 0.0 0.0 -4,-6 0.0013 2 -2.0 MINOR ENSMUSG00000014418 Hps5 ENSMUST00000152759 ENSMUSP00000115786 TRANSLATION protein_coding stop - 3 202.0 0.0 3.5 0.7 0.0 0.0 -4,-6 0.162 3 -2.0 MINOR ENSMUSG00000014418 Hps5 ENSMUST00000211471 ENSMUSP00000147976 TRANSLATION protein_coding start/stop - 5 119.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000014418 Hps5 ENSMUST00000157026 - NO_TRANSLATION retained_intron ENSMUSG00000014418 Hps5 ENSMUST00000143627 - NO_TRANSLATION retained_intron ENSMUSG00000014418 Hps5 ENSMUST00000130365 ENSMUSP00000114384 TRANSLATION protein_coding start/stop - 5 253.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0202 2 -2.0 MINOR ENSMUSG00000014418 Hps5 ENSMUST00000153789 ENSMUSP00000119876 TRANSLATION protein_coding start/stop - 5 534.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0361 7 -2.0 MINOR ENSMUSG00000014418 Hps5 ENSMUST00000138480 ENSMUSP00000147750 TRANSLATION nonsense_mediated_decay start - 3 77.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0171 - -2.0 MINOR ENSMUSG00000014418 Hps5 ENSMUST00000211347 ENSMUSP00000147450 TRANSLATION nonsense_mediated_decay - - 1 204.0 0.0 3.5 0.7 0.0 0.0 -4,-6 0.1633 3 -2.0 MINOR ENSMUSG00000014418 Hps5 ENSMUST00000107653 ENSMUSP00000103280 TRANSLATION protein_coding - CCDS52254.1 1 1093.0 0.0 3.5 0.0 0.0 0.0 -4,-6 0.3374 15 6.0 MINOR ENSMUSG00000091867 Cyp2a22 ENSMUST00000206957 - NO_TRANSLATION retained_intron ENSMUSG00000091867 Cyp2a22 ENSMUST00000170227 ENSMUSP00000128030 TRANSLATION protein_coding - CCDS52156.1 1 492.0 50.0 9.0 13.5 486.4 0.0 1,-3 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000030688 Stard10 ENSMUST00000163799 ENSMUSP00000129408 TRANSLATION protein_coding - - 1 364.0 0.0 7.52 0.3 89.2 0.0 -4,-6 0.1294 10 12.0 MINOR ENSMUSG00000030688 Stard10 ENSMUST00000173270 ENSMUSP00000133955 TRANSLATION protein_coding - - 5 160.0 0.0 4.525 0.0 41.0 0.0 -4,-6 0.0 7 2.772 MINOR ENSMUSG00000030688 Stard10 ENSMUST00000210192 ENSMUSP00000148114 TRANSLATION protein_coding - CCDS21509.1 5 291.0 0.0 7.52 10.1 89.2 0.0 -4,-6 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000030688 Stard10 ENSMUST00000032927 ENSMUSP00000032927 TRANSLATION protein_coding - CCDS21509.1 1 291.0 0.0 7.52 10.1 89.2 0.0 -4,-6 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000030688 Stard10 ENSMUST00000174291 ENSMUSP00000133985 TRANSLATION protein_coding start - 5 283.0 0.0 6.02 0.0 86.7 0.0 -3,0 0.0357 7 -2.0 MINOR ENSMUSG00000030688 Stard10 ENSMUST00000174083 - NO_TRANSLATION retained_intron ENSMUSG00000030688 Stard10 ENSMUST00000172662 ENSMUSP00000134156 TRANSLATION protein_coding start - 1 87.0 0.0 1.55 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000030688 Stard10 ENSMUST00000174140 ENSMUSP00000134430 TRANSLATION nonsense_mediated_decay start - 5 49.0 0.0 1.066 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030688 Stard10 ENSMUST00000164479 ENSMUSP00000133002 TRANSLATION protein_coding - CCDS21509.1 1 291.0 0.0 7.52 10.1 89.2 0.0 -4,-6 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000030688 Stard10 ENSMUST00000167888 ENSMUSP00000127962 TRANSLATION protein_coding start - 1 265.0 0.0 5.36 0.0 72.8 0.0 -4,-2 0.0021 9 -2.0 MINOR ENSMUSG00000030688 Stard10 ENSMUST00000172630 ENSMUSP00000134138 TRANSLATION protein_coding stop - 2 150.0 0.0 4.36 0.0 34.8 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000045752 Tssc4 ENSMUST00000060433 ENSMUSP00000056582 TRANSLATION protein_coding - CCDS40195.1 1 317.0 0.0 0.0 0.3 137.7 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000045752 Tssc4 ENSMUST00000137856 ENSMUSP00000123353 TRANSLATION protein_coding stop - 2 217.0 0.0 0.0 0.0 137.7 0.0 -4,-5 0.0512 6 -2.0 MINOR ENSMUSG00000045752 Tssc4 ENSMUST00000177841 ENSMUSP00000137399 TRANSLATION protein_coding - CCDS40195.1 2 317.0 0.0 0.0 0.3 137.7 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000045752 Tssc4 ENSMUST00000105920 ENSMUSP00000101540 TRANSLATION protein_coding - CCDS40196.1 1 114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0438 2 0.0 MINOR ENSMUSG00000045752 Tssc4 ENSMUST00000133410 ENSMUSP00000123499 TRANSLATION protein_coding stop - 2 265.0 0.0 0.0 0.0 121.6 0.0 -4,-7 0.0158 5 -2.0 MINOR ENSMUSG00000045752 Tssc4 ENSMUST00000147995 ENSMUSP00000122335 TRANSLATION protein_coding stop - 2 196.0 0.0 0.0 0.0 121.6 0.0 -4,-5 0.0075 5 -2.0 MINOR ENSMUSG00000045752 Tssc4 ENSMUST00000207776 - NO_TRANSLATION retained_intron ENSMUSG00000045752 Tssc4 ENSMUST00000208779 ENSMUSP00000146914 TRANSLATION protein_coding - CCDS40196.1 1 114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0438 2 0.0 MINOR ENSMUSG00000038930 Rccd1 ENSMUST00000121882 ENSMUSP00000113273 TRANSLATION protein_coding - CCDS21394.1 5 377.0 0.0 2.73 4.3 123.6 0.0 -2,0 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000038930 Rccd1 ENSMUST00000144685 - NO_TRANSLATION retained_intron ENSMUSG00000038930 Rccd1 ENSMUST00000047362 ENSMUSP00000048043 TRANSLATION protein_coding - CCDS21394.1 1 377.0 0.0 2.73 4.3 123.6 0.0 -2,0 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000038930 Rccd1 ENSMUST00000134288 - NO_TRANSLATION retained_intron ENSMUSG00000038930 Rccd1 ENSMUST00000205863 - NO_TRANSLATION retained_intron ENSMUSG00000038930 Rccd1 ENSMUST00000130888 - NO_TRANSLATION retained_intron ENSMUSG00000038930 Rccd1 ENSMUST00000123189 ENSMUSP00000121884 TRANSLATION protein_coding stop - 3 38.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000038930 Rccd1 ENSMUST00000155124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038930 Rccd1 ENSMUST00000123109 - NO_TRANSLATION retained_intron ENSMUSG00000038930 Rccd1 ENSMUST00000148001 - NO_TRANSLATION retained_intron ENSMUSG00000062426 Or14a258 ENSMUST00000077210 ENSMUSP00000076449 TRANSLATION protein_coding - CCDS21428.1 - 333.0 0.0 0.8 0.4 128.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000051680 Or2ag12 ENSMUST00000057817 ENSMUSP00000059679 TRANSLATION protein_coding - CCDS21665.1 - 316.0 0.0 1.0 8.7 162.3 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051680 Or2ag12 ENSMUST00000215541 ENSMUSP00000150203 TRANSLATION protein_coding - CCDS21665.1 5 316.0 0.0 1.0 8.7 162.3 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030691 Fchsd2 ENSMUST00000032931 ENSMUSP00000032931 TRANSLATION protein_coding - CCDS52327.1 1 764.0 0.0 5.715 8.8 166.5 0.0 -4,-7 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000030691 Fchsd2 ENSMUST00000151693 - NO_TRANSLATION retained_intron ENSMUSG00000030691 Fchsd2 ENSMUST00000142727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030691 Fchsd2 ENSMUST00000208917 - NO_TRANSLATION retained_intron ENSMUSG00000030691 Fchsd2 ENSMUST00000130426 - NO_TRANSLATION retained_intron ENSMUSG00000030691 Fchsd2 ENSMUST00000137196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030691 Fchsd2 ENSMUST00000208439 ENSMUSP00000146962 TRANSLATION protein_coding stop - 5 179.0 0.0 1.0 0.0 79.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000030691 Fchsd2 ENSMUST00000208063 - NO_TRANSLATION retained_intron ENSMUSG00000030691 Fchsd2 ENSMUST00000145802 - NO_TRANSLATION retained_intron ENSMUSG00000030691 Fchsd2 ENSMUST00000098250 ENSMUSP00000095850 TRANSLATION protein_coding - CCDS52328.1 1 740.0 0.0 5.34 0.0 166.5 0.0 -4,-7 0.1709 11 11.25 MINOR ENSMUSG00000030691 Fchsd2 ENSMUST00000208638 - NO_TRANSLATION retained_intron ENSMUSG00000048787 Dcun1d3 ENSMUST00000207233 ENSMUSP00000147253 TRANSLATION protein_coding - CCDS21789.1 5 304.0 0.0 2.75 22.7 115.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000048787 Dcun1d3 ENSMUST00000059851 ENSMUSP00000058968 TRANSLATION protein_coding - CCDS21789.1 1 304.0 0.0 2.75 22.7 115.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000048787 Dcun1d3 ENSMUST00000137888 ENSMUSP00000115386 TRANSLATION protein_coding stop - 3 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048787 Dcun1d3 ENSMUST00000098080 ENSMUSP00000095686 TRANSLATION protein_coding - CCDS21789.1 1 304.0 0.0 2.75 22.7 115.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000048787 Dcun1d3 ENSMUST00000106519 ENSMUSP00000102129 TRANSLATION protein_coding - CCDS21789.1 5 304.0 0.0 2.75 22.7 115.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000048787 Dcun1d3 ENSMUST00000207488 - NO_TRANSLATION retained_intron ENSMUSG00000048787 Dcun1d3 ENSMUST00000142120 ENSMUSP00000118439 TRANSLATION protein_coding stop - 3 165.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000030760 Acer3 ENSMUST00000206182 - NO_TRANSLATION retained_intron ENSMUSG00000030760 Acer3 ENSMUST00000120520 ENSMUSP00000112884 TRANSLATION protein_coding - - 1 225.0 0.0 7.0 6.9 190.9 8.0 -4,-7 0.1071 1 5.8 MINOR ENSMUSG00000030760 Acer3 ENSMUST00000033020 ENSMUSP00000033020 TRANSLATION protein_coding - CCDS21468.1 1 267.0 0.0 8.33 28.2 264.4 9.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030760 Acer3 ENSMUST00000151258 ENSMUSP00000116127 TRANSLATION nonsense_mediated_decay - - 5 174.0 0.0 5.495 0.0 186.1 7.0 -4,-6 0.0029 - -2.0 MINOR ENSMUSG00000030760 Acer3 ENSMUST00000137899 ENSMUSP00000120334 TRANSLATION nonsense_mediated_decay - - 3 90.0 0.0 2.83 0.0 121.1 3.0 -4,-6 0.0015 - -2.0 MINOR ENSMUSG00000073795 Spef1l ENSMUST00000097970 ENSMUSP00000095584 TRANSLATION protein_coding - CCDS40172.1 1 307.0 0.0 2.0 0.4 111.7 0.0 -4,-6 0.2634 - 8.0 ALTERNATIVE:2 ENSMUSG00000073795 Spef1l ENSMUST00000209335 ENSMUSP00000148257 TRANSLATION protein_coding - CCDS85449.1 1 223.0 0.0 2.0 0.1 111.7 0.0 -4,-6 0.2286 - 8.0 ALTERNATIVE:2 ENSMUSG00000073795 Spef1l ENSMUST00000121412 ENSMUSP00000113338 TRANSLATION protein_coding - - 1 248.0 0.0 2.0 0.0 111.7 0.0 -4,-6 0.6203 - 8.0 ALTERNATIVE:2 ENSMUSG00000073795 Spef1l ENSMUST00000146974 - NO_TRANSLATION retained_intron ENSMUSG00000073795 Spef1l ENSMUST00000210254 ENSMUSP00000147330 TRANSLATION protein_coding - CCDS85450.1 1 248.0 0.0 2.0 0.1 111.7 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000074361 C5ar2 ENSMUST00000171425 ENSMUSP00000133056 TRANSLATION protein_coding - - 1 344.0 0.0 1.0 0.1 98.0 10.0 -4,-6 0.8132 - 6.0 PRINCIPAL:4 ENSMUSG00000074361 C5ar2 ENSMUST00000238927 ENSMUSP00000158951 TRANSLATION protein_coding - - - 344.0 0.0 1.0 0.1 98.0 10.0 -4,-6 0.8132 - 6.0 PRINCIPAL:4 ENSMUSG00000074361 C5ar2 ENSMUST00000238893 ENSMUSP00000159074 TRANSLATION protein_coding - CCDS52037.1 - 358.0 0.0 1.0 0.0 98.0 10.0 -4,-6 0.5638 - 6.0 ALTERNATIVE:2 ENSMUSG00000074361 C5ar2 ENSMUST00000098792 ENSMUSP00000096389 TRANSLATION protein_coding - CCDS52036.1 1 358.0 0.0 1.0 0.0 98.0 10.0 -4,-2 0.5876 - 6.0 ALTERNATIVE:2 ENSMUSG00000051451 Crebzf ENSMUST00000146291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051451 Crebzf ENSMUST00000061767 ENSMUSP00000050972 TRANSLATION protein_coding - CCDS40020.1 - 358.0 0.0 1.5 0.4 28.9 0.0 -4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000051451 Crebzf ENSMUST00000143408 ENSMUSP00000146879 TRANSLATION nonsense_mediated_decay - - 2 125.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0506 - -2.0 MINOR ENSMUSG00000051451 Crebzf ENSMUST00000208379 ENSMUSP00000146363 TRANSLATION nonsense_mediated_decay start - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000051451 Crebzf ENSMUST00000107206 ENSMUSP00000102824 TRANSLATION nonsense_mediated_decay - - 2 129.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0506 2 -2.0 MINOR ENSMUSG00000051451 Crebzf ENSMUST00000126041 ENSMUSP00000146706 TRANSLATION nonsense_mediated_decay - - 3 125.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0506 2 -2.0 MINOR ENSMUSG00000051451 Crebzf ENSMUST00000207252 ENSMUSP00000146596 TRANSLATION nonsense_mediated_decay start - 3 72.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000051451 Crebzf ENSMUST00000107205 ENSMUSP00000102823 TRANSLATION nonsense_mediated_decay start - 5 116.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000051451 Crebzf ENSMUST00000209102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096373 Vmn2r31 ENSMUST00000075108 ENSMUSP00000074613 TRANSLATION protein_coding - CCDS51995.1 5 861.0 4.0 2.05 0.1 392.6 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030525 Chrna7 ENSMUST00000032738 ENSMUSP00000032738 TRANSLATION protein_coding - CCDS21329.1 1 502.0 0.0 7.5 5.7 455.8 0.0 2,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000030525 Chrna7 ENSMUST00000208304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042659 Arrdc4 ENSMUST00000048068 ENSMUSP00000044578 TRANSLATION protein_coding - CCDS39985.1 1 415.0 0.0 4.45 5.0 184.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042659 Arrdc4 ENSMUST00000118110 ENSMUSP00000112962 TRANSLATION protein_coding - CCDS52272.1 1 296.0 0.0 3.85 0.0 167.9 0.0 -4,-5 0.0095 - 9.786 MINOR ENSMUSG00000095973 Vmn1r116 ENSMUST00000164288 ENSMUSP00000128742 TRANSLATION protein_coding - CCDS52084.1 - 307.0 0.0 0.0 0.4 56.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031077 Fadd ENSMUST00000033394 ENSMUSP00000033394 TRANSLATION protein_coding - CCDS22050.1 1 205.0 0.0 2.0 3.9 143.2 0.0 -2,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000096069 Or13a28 ENSMUST00000210373 ENSMUSP00000147994 TRANSLATION protein_coding stop - 3 68.0 0.0 1.0 0.0 39.7 2.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000096069 Or13a28 ENSMUST00000084455 ENSMUSP00000081493 TRANSLATION protein_coding - CCDS52435.1 - 311.0 0.0 3.0 2.6 166.2 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000096069 Or13a28 ENSMUST00000210241 ENSMUSP00000147819 TRANSLATION protein_coding - CCDS52435.1 5 311.0 0.0 3.0 2.6 166.2 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000096069 Or13a28 ENSMUST00000211685 ENSMUSP00000147924 TRANSLATION protein_coding - CCDS52435.1 2 311.0 0.0 3.0 2.6 166.2 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000055633 Zfp580 ENSMUST00000208570 ENSMUSP00000147223 TRANSLATION protein_coding - - 1 230.0 12.0 0.5 0.0 46.9 0.0 -4,-6 0.057 1 14.0 ALTERNATIVE:2 ENSMUSG00000055633 Zfp580 ENSMUST00000069324 ENSMUSP00000065861 TRANSLATION protein_coding - CCDS51982.1 1 172.0 12.0 0.5 0.8 46.9 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000073928 Or52h9 ENSMUST00000216246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073928 Or52h9 ENSMUST00000098176 ENSMUSP00000095778 TRANSLATION protein_coding - CCDS21617.1 - 313.0 0.0 1.0 11.5 346.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073928 Or52h9 ENSMUST00000216904 ENSMUSP00000150776 TRANSLATION protein_coding - CCDS21617.1 5 313.0 0.0 1.0 11.5 346.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003436 Dll3 ENSMUST00000145512 - NO_TRANSLATION retained_intron ENSMUSG00000003436 Dll3 ENSMUST00000138721 - NO_TRANSLATION retained_intron ENSMUSG00000003436 Dll3 ENSMUST00000108315 ENSMUSP00000103951 TRANSLATION protein_coding - CCDS39856.1 1 585.0 11.0 3.0 5.4 115.0 0.0 3,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000025464 Paox ENSMUST00000097967 ENSMUSP00000095580 TRANSLATION protein_coding - CCDS85452.1 1 274.0 25.0 5.0475 0.0 139.7 0.0 -1,2 0.0197 7 3.0 MINOR ENSMUSG00000025464 Paox ENSMUST00000211757 ENSMUSP00000147545 TRANSLATION protein_coding stop - 2 206.0 9.0 2.2 0.0 85.7 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000025464 Paox ENSMUST00000026537 ENSMUSP00000026537 TRANSLATION protein_coding - CCDS21965.1 1 504.0 35.0 6.5475 0.4 260.8 0.0 -1,2 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000025464 Paox ENSMUST00000210240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025464 Paox ENSMUST00000209908 ENSMUSP00000147852 TRANSLATION nonsense_mediated_decay start - 2 83.0 0.0 0.2 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000030530 Furin ENSMUST00000146771 - NO_TRANSLATION retained_intron ENSMUSG00000030530 Furin ENSMUST00000120753 ENSMUSP00000113793 TRANSLATION protein_coding - CCDS21397.1 5 793.0 7.0 13.48 9.2 356.0 0.0 1,-3 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000030530 Furin ENSMUST00000206352 ENSMUSP00000146304 TRANSLATION nonsense_mediated_decay start - 5 70.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000030530 Furin ENSMUST00000135306 ENSMUSP00000116734 TRANSLATION protein_coding stop - 2 59.0 0.0 0.6 0.0 32.1 0.0 1,-3 0.0008 - -2.0 MINOR ENSMUSG00000030530 Furin ENSMUST00000107362 ENSMUSP00000102985 TRANSLATION protein_coding - CCDS21397.1 5 793.0 7.0 13.48 9.2 356.0 0.0 1,-3 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000030530 Furin ENSMUST00000122232 ENSMUSP00000113370 TRANSLATION protein_coding - CCDS21397.1 1 793.0 7.0 13.48 9.2 356.0 0.0 1,-3 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000030530 Furin ENSMUST00000147150 ENSMUSP00000121028 TRANSLATION protein_coding stop - 3 43.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0029 - -2.0 MINOR ENSMUSG00000030530 Furin ENSMUST00000153446 - NO_TRANSLATION retained_intron ENSMUSG00000078752 Scgb1b30 ENSMUST00000108083 ENSMUSP00000103718 TRANSLATION protein_coding - CCDS52201.1 5 92.0 0.0 1.33 0.0 70.8 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000061286 Exosc5 ENSMUST00000079634 ENSMUSP00000078580 TRANSLATION protein_coding - CCDS20990.1 1 235.0 0.0 6.25 6.3 112.4 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000061286 Exosc5 ENSMUST00000205743 ENSMUSP00000146157 TRANSLATION nonsense_mediated_decay - - 3 84.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000061286 Exosc5 ENSMUST00000205966 ENSMUSP00000145921 TRANSLATION nonsense_mediated_decay - - 5 128.0 0.0 2.15 0.0 34.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000061286 Exosc5 ENSMUST00000206561 ENSMUSP00000145948 TRANSLATION protein_coding - CCDS20990.1 1 235.0 0.0 6.25 6.3 112.4 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000061286 Exosc5 ENSMUST00000205275 - NO_TRANSLATION retained_intron ENSMUSG00000061286 Exosc5 ENSMUST00000205614 - NO_TRANSLATION retained_intron ENSMUSG00000015165 Hnrnpl ENSMUST00000174755 - NO_TRANSLATION retained_intron ENSMUSG00000015165 Hnrnpl ENSMUST00000174526 - NO_TRANSLATION retained_intron ENSMUSG00000015165 Hnrnpl ENSMUST00000172529 ENSMUSP00000133932 TRANSLATION protein_coding - - 5 456.0 0.0 8.63 8.7 206.1 0.0 -4,-5 0.636 18 10.791 MINOR ENSMUSG00000015165 Hnrnpl ENSMUST00000173750 - NO_TRANSLATION retained_intron ENSMUSG00000015165 Hnrnpl ENSMUST00000173818 - NO_TRANSLATION retained_intron ENSMUSG00000015165 Hnrnpl ENSMUST00000174548 ENSMUSP00000133728 TRANSLATION protein_coding - CCDS39864.2 5 586.0 0.0 9.88 9.8 228.3 0.0 -4,-1 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000015165 Hnrnpl ENSMUST00000038572 ENSMUSP00000049407 TRANSLATION protein_coding - CCDS39864.2 1 586.0 0.0 9.88 9.8 228.3 0.0 -4,-1 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000015165 Hnrnpl ENSMUST00000173578 - NO_TRANSLATION retained_intron ENSMUSG00000015165 Hnrnpl ENSMUST00000172841 - NO_TRANSLATION retained_intron ENSMUSG00000015165 Hnrnpl ENSMUST00000174396 - NO_TRANSLATION retained_intron ENSMUSG00000015165 Hnrnpl ENSMUST00000172884 ENSMUSP00000134271 TRANSLATION protein_coding stop - 5 112.0 0.0 2.08 0.0 21.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000015165 Hnrnpl ENSMUST00000174882 ENSMUSP00000133952 TRANSLATION nonsense_mediated_decay start - 5 201.0 0.0 4.28 0.0 58.3 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000015165 Hnrnpl ENSMUST00000174477 ENSMUSP00000134734 TRANSLATION protein_coding start - 1 615.0 0.0 9.88 0.0 228.3 0.0 -4,-7 0.0368 24 -2.0 MINOR ENSMUSG00000070421 Or52n4 ENSMUST00000210641 ENSMUSP00000147498 TRANSLATION protein_coding - - 1 321.0 0.0 1.0 14.5 360.6 7.0 -4,-7 0.8852 - 12.0 ALTERNATIVE:1 ENSMUSG00000070421 Or52n4 ENSMUST00000089296 ENSMUSP00000086711 TRANSLATION protein_coding - CCDS21624.1 1 323.0 0.0 1.0 14.5 360.6 7.0 -4,-7 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000045733 Sprn ENSMUST00000156791 ENSMUSP00000147870 TRANSLATION protein_coding start - 3 95.0 0.0 0.0 0.0 148.5 0.0 -3,1 0.0 1 -2.0 MINOR ENSMUSG00000045733 Sprn ENSMUST00000059241 ENSMUSP00000053901 TRANSLATION protein_coding - CCDS21966.1 1 147.0 0.0 0.0 2.2 225.4 0.0 2,-2 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000054808 Actn4 ENSMUST00000144909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054808 Actn4 ENSMUST00000216863 ENSMUSP00000151188 TRANSLATION protein_coding start - 5 323.0 0.0 6.75 0.0 174.7 0.0 -4,-5 0.0008 16 -2.0 MINOR ENSMUSG00000054808 Actn4 ENSMUST00000129338 - NO_TRANSLATION retained_intron ENSMUSG00000054808 Actn4 ENSMUST00000207765 - NO_TRANSLATION retained_intron ENSMUSG00000054808 Actn4 ENSMUST00000148196 ENSMUSP00000122268 TRANSLATION protein_coding stop - 5 133.0 0.0 3.58 0.0 93.5 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000054808 Actn4 ENSMUST00000217157 ENSMUSP00000151028 TRANSLATION protein_coding - - 5 932.0 3.0 20.93 0.0 554.5 0.0 -4,-5 0.1452 40 11.0 ALTERNATIVE:2 ENSMUSG00000054808 Actn4 ENSMUST00000127210 ENSMUSP00000115436 TRANSLATION protein_coding stop - 5 518.0 0.0 11.68 0.0 319.5 0.0 -4,-5 0.0002 20 -2.0 MINOR ENSMUSG00000054808 Actn4 ENSMUST00000143584 - NO_TRANSLATION retained_intron ENSMUSG00000054808 Actn4 ENSMUST00000140622 ENSMUSP00000123210 TRANSLATION protein_coding stop - 5 206.0 0.0 5.58 0.0 140.5 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000054808 Actn4 ENSMUST00000068045 ENSMUSP00000066068 TRANSLATION protein_coding - CCDS21061.1 1 912.0 3.0 20.18 11.9 531.6 0.0 -4,-5 1.0 39 11.9 PRINCIPAL:2 ENSMUSG00000054808 Actn4 ENSMUST00000150493 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041775 Mapk1ip1 ENSMUST00000118810 ENSMUSP00000113813 TRANSLATION protein_coding - CCDS21949.1 1 263.0 0.0 0.2 0.1 165.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041775 Mapk1ip1 ENSMUST00000119664 ENSMUSP00000112631 TRANSLATION protein_coding - CCDS21949.1 1 263.0 0.0 0.2 0.1 165.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041775 Mapk1ip1 ENSMUST00000075667 ENSMUSP00000075090 TRANSLATION protein_coding - CCDS21949.1 1 263.0 0.0 0.2 0.1 165.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054236 Or5p4 ENSMUST00000067143 ENSMUSP00000063555 TRANSLATION protein_coding - CCDS21703.1 - 312.0 0.0 1.0 10.4 169.1 3.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054236 Or5p4 ENSMUST00000213601 ENSMUSP00000151152 TRANSLATION protein_coding - CCDS21703.1 5 312.0 0.0 1.0 10.4 169.1 3.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030630 Fah ENSMUST00000032865 ENSMUSP00000032865 TRANSLATION protein_coding - CCDS21418.1 1 419.0 14.0 12.16 22.1 309.0 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000030630 Fah ENSMUST00000153126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030630 Fah ENSMUST00000209112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030630 Fah ENSMUST00000128460 ENSMUSP00000121439 TRANSLATION protein_coding stop - 5 141.0 8.0 4.33 0.0 84.8 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000030630 Fah ENSMUST00000134390 - NO_TRANSLATION retained_intron ENSMUSG00000059874 Or52e19b ENSMUST00000071844 ENSMUSP00000071744 TRANSLATION protein_coding - CCDS21571.1 - 312.0 0.0 1.0 12.5 400.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059874 Or52e19b ENSMUST00000218246 ENSMUSP00000151321 TRANSLATION protein_coding - CCDS21571.1 5 312.0 0.0 1.0 12.5 400.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021217 Tshz3 ENSMUST00000176413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021217 Tshz3 ENSMUST00000021641 ENSMUSP00000021641 TRANSLATION protein_coding - CCDS39913.1 1 1081.0 12.0 0.0 18.4 13.5 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000096743 Vmn2r32 ENSMUST00000094866 ENSMUSP00000092462 TRANSLATION protein_coding - CCDS51996.1 5 852.0 4.0 1.97 0.1 387.1 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036931 Nfkbid ENSMUST00000153042 - NO_TRANSLATION retained_intron ENSMUSG00000036931 Nfkbid ENSMUST00000108175 ENSMUSP00000103810 TRANSLATION protein_coding - CCDS21091.1 1 327.0 0.0 6.6 4.3 58.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000036931 Nfkbid ENSMUST00000046177 ENSMUSP00000042317 TRANSLATION protein_coding - CCDS21091.1 1 327.0 0.0 6.6 4.3 58.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000036931 Nfkbid ENSMUST00000108176 ENSMUSP00000103811 TRANSLATION protein_coding - - 1 470.0 0.0 6.6 0.0 58.2 0.0 -4,-7 0.0336 - 12.0 MINOR ENSMUSG00000037613 Tnfrsf23 ENSMUST00000208613 - NO_TRANSLATION retained_intron ENSMUSG00000037613 Tnfrsf23 ENSMUST00000035742 ENSMUSP00000042431 TRANSLATION nonsense_mediated_decay - - 1 107.0 0.0 2.15 0.0 22.2 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000037613 Tnfrsf23 ENSMUST00000208017 ENSMUSP00000146956 TRANSLATION protein_coding - CCDS85480.1 3 131.0 0.0 2.249 0.0 22.2 0.0 4,-1 0.036 - 4.014 MINOR ENSMUSG00000037613 Tnfrsf23 ENSMUST00000152703 ENSMUSP00000116742 TRANSLATION protein_coding - CCDS22044.1 1 176.0 0.0 3.9 0.0 100.3 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000046792 Zfp787 ENSMUST00000207315 ENSMUSP00000147060 TRANSLATION protein_coding stop - 3 98.0 4.0 1.1 0.0 33.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046792 Zfp787 ENSMUST00000208894 - NO_TRANSLATION retained_intron ENSMUSG00000046792 Zfp787 ENSMUST00000208746 ENSMUSP00000146871 TRANSLATION protein_coding - - 2 30.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - 1.056 MINOR ENSMUSG00000046792 Zfp787 ENSMUST00000207957 ENSMUSP00000146901 TRANSLATION protein_coding - - 5 69.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - 1.056 MINOR ENSMUSG00000046792 Zfp787 ENSMUST00000094870 ENSMUSP00000092468 TRANSLATION protein_coding - CCDS20769.1 1 381.0 27.0 1.7 6.1 151.6 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000046792 Zfp787 ENSMUST00000207628 ENSMUSP00000147044 TRANSLATION protein_coding - - 1 30.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - 1.056 MINOR ENSMUSG00000046792 Zfp787 ENSMUST00000207331 ENSMUSP00000146951 TRANSLATION protein_coding - - 1 30.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - 1.056 MINOR ENSMUSG00000057770 Or52n2c ENSMUST00000164391 ENSMUSP00000130975 TRANSLATION protein_coding - CCDS57572.1 - 318.0 0.0 1.0 10.9 342.3 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057770 Or52n2c ENSMUST00000215359 ENSMUSP00000150824 TRANSLATION protein_coding - CCDS57572.1 5 318.0 0.0 1.0 10.9 342.3 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073897 Or10a4 ENSMUST00000098138 ENSMUSP00000095741 TRANSLATION protein_coding - CCDS57578.1 - 315.0 0.0 1.0 9.9 196.1 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073897 Or10a4 ENSMUST00000210568 ENSMUSP00000147931 TRANSLATION protein_coding - CCDS57578.1 5 315.0 0.0 1.0 9.9 196.1 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096513 Vmn1r247 ENSMUST00000172863 ENSMUSP00000134084 TRANSLATION protein_coding - CCDS71903.1 - 314.0 0.0 0.0 0.0 59.4 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000052749 Trim30b ENSMUST00000209729 - NO_TRANSLATION retained_intron ENSMUSG00000052749 Trim30b ENSMUST00000155961 - NO_TRANSLATION retained_intron ENSMUSG00000052749 Trim30b ENSMUST00000164410 ENSMUSP00000131747 TRANSLATION protein_coding - - 1 203.0 16.0 1.398 0.0 78.4 0.0 -4,-5 0.0429 - 13.784 ALTERNATIVE:2 ENSMUSG00000052749 Trim30b ENSMUST00000145982 - NO_TRANSLATION retained_intron ENSMUSG00000052749 Trim30b ENSMUST00000106831 ENSMUSP00000102444 TRANSLATION protein_coding - - 1 189.0 16.0 1.45 0.0 78.4 0.0 -4,-5 0.7736 - 14.0 PRINCIPAL:2 ENSMUSG00000078762 Haus5 ENSMUST00000019697 ENSMUSP00000019697 TRANSLATION protein_coding - CCDS52180.1 1 619.0 0.0 0.0 0.0 522.5 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000078762 Haus5 ENSMUST00000142741 - NO_TRANSLATION retained_intron ENSMUSG00000078762 Haus5 ENSMUST00000126511 - NO_TRANSLATION retained_intron ENSMUSG00000078762 Haus5 ENSMUST00000142823 - NO_TRANSLATION retained_intron ENSMUSG00000078762 Haus5 ENSMUST00000132862 ENSMUSP00000121739 TRANSLATION nonsense_mediated_decay - - 1 517.0 0.0 0.0 0.0 424.5 0.0 -4,-5 0.0038 4 -2.0 MINOR ENSMUSG00000078762 Haus5 ENSMUST00000132982 - NO_TRANSLATION retained_intron ENSMUSG00000030994 D7Ertd443e ENSMUST00000172947 ENSMUSP00000134479 TRANSLATION protein_coding - CCDS57591.1 1 691.0 0.0 0.0 0.0 170.6 0.0 -4,-5 0.2608 1 2.0 ALTERNATIVE:2 ENSMUSG00000030994 D7Ertd443e ENSMUST00000094002 ENSMUSP00000091539 TRANSLATION protein_coding - CCDS57590.1 5 644.0 0.0 0.0 0.1 170.6 0.0 -4,-5 1.0 1 2.0 PRINCIPAL:2 ENSMUSG00000030994 D7Ertd443e ENSMUST00000238294 ENSMUSP00000158736 TRANSLATION protein_coding stop - - 311.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0047 - -2.0 MINOR ENSMUSG00000030994 D7Ertd443e ENSMUST00000174271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030994 D7Ertd443e ENSMUST00000206005 - NO_TRANSLATION retained_intron ENSMUSG00000030994 D7Ertd443e ENSMUST00000205682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030994 D7Ertd443e ENSMUST00000106129 ENSMUSP00000101735 TRANSLATION protein_coding - - 1 285.0 0.0 0.0 0.1 170.6 0.0 -4,-6 0.051 - 2.0 ALTERNATIVE:2 ENSMUSG00000030994 D7Ertd443e ENSMUST00000205334 - NO_TRANSLATION retained_intron ENSMUSG00000030994 D7Ertd443e ENSMUST00000174700 ENSMUSP00000134411 TRANSLATION protein_coding start/stop - 3 97.0 0.0 0.0 0.0 50.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030994 D7Ertd443e ENSMUST00000173754 ENSMUSP00000133963 TRANSLATION protein_coding stop - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030994 D7Ertd443e ENSMUST00000173195 ENSMUSP00000134585 TRANSLATION protein_coding stop - 2 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047730 Fcgbp ENSMUST00000131090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047730 Fcgbp ENSMUST00000076648 ENSMUSP00000075945 TRANSLATION protein_coding - CCDS52159.1 5 2583.0 0.0 2.678 4.0 1627.7 0.0 3,-2 1.0 48 10.0 PRINCIPAL:3 ENSMUSG00000047730 Fcgbp ENSMUST00000154481 - NO_TRANSLATION retained_intron ENSMUSG00000047730 Fcgbp ENSMUST00000138392 ENSMUSP00000114271 TRANSLATION protein_coding - - 5 2583.0 0.0 2.678 4.0 1630.8 0.0 3,-2 0.8158 47 10.0 ALTERNATIVE:2 ENSMUSG00000047730 Fcgbp ENSMUST00000148946 - NO_TRANSLATION retained_intron ENSMUSG00000047730 Fcgbp ENSMUST00000140004 - NO_TRANSLATION retained_intron ENSMUSG00000030421 Uri1 ENSMUST00000205809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030421 Uri1 ENSMUST00000206169 ENSMUSP00000146321 TRANSLATION nonsense_mediated_decay start - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030421 Uri1 ENSMUST00000206327 ENSMUSP00000145978 TRANSLATION protein_coding start - 5 526.0 0.0 4.4 0.0 54.6 0.0 -4,-2 0.2341 6 -2.0 MINOR ENSMUSG00000030421 Uri1 ENSMUST00000205918 ENSMUSP00000145882 TRANSLATION protein_coding start - 5 94.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000030421 Uri1 ENSMUST00000206581 ENSMUSP00000145738 TRANSLATION protein_coding start - 1 533.0 0.0 4.0 0.0 53.9 0.0 1,-2 0.2541 6 -2.0 MINOR ENSMUSG00000030421 Uri1 ENSMUST00000085513 ENSMUSP00000082646 TRANSLATION protein_coding - CCDS21157.1 1 531.0 0.0 4.4 0.0 54.6 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000030421 Uri1 ENSMUST00000205927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047603 Zfp235 ENSMUST00000205736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047603 Zfp235 ENSMUST00000205680 ENSMUSP00000145993 TRANSLATION protein_coding stop - 1 332.0 0.0 1.0 0.0 67.9 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000047603 Zfp235 ENSMUST00000205834 - NO_TRANSLATION retained_intron ENSMUSG00000047603 Zfp235 ENSMUST00000206809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047603 Zfp235 ENSMUST00000205740 - NO_TRANSLATION retained_intron ENSMUSG00000047603 Zfp235 ENSMUST00000056549 ENSMUSP00000050803 TRANSLATION protein_coding - CCDS39825.1 1 702.0 60.0 2.0 0.0 374.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000003123 Lipe ENSMUST00000054301 ENSMUSP00000050935 TRANSLATION protein_coding - CCDS20982.1 1 759.0 3.0 2.831 0.4 379.3 0.0 -4,-5 0.3454 26 11.0 ALTERNATIVE:2 ENSMUSG00000003123 Lipe ENSMUST00000003207 ENSMUSP00000003207 TRANSLATION protein_coding - CCDS20981.1 1 802.0 3.0 2.831 0.4 379.3 0.0 -4,-5 1.0 26 11.0 PRINCIPAL:2 ENSMUSG00000003123 Lipe ENSMUST00000206588 - NO_TRANSLATION retained_intron ENSMUSG00000003123 Lipe ENSMUST00000105177 ENSMUSP00000100811 TRANSLATION protein_coding - - - 334.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0018 4 0.0 MINOR ENSMUSG00000003123 Lipe ENSMUST00000205923 ENSMUSP00000145669 TRANSLATION nonsense_mediated_decay start - 5 180.0 0.0 1.0 0.0 46.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000003123 Lipe ENSMUST00000205698 ENSMUSP00000146000 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003123 Lipe ENSMUST00000206861 ENSMUSP00000145665 TRANSLATION protein_coding - CCDS20982.1 1 759.0 3.0 2.831 0.4 379.3 0.0 -4,-5 0.3454 26 11.0 ALTERNATIVE:2 ENSMUSG00000003123 Lipe ENSMUST00000149349 ENSMUSP00000123485 TRANSLATION protein_coding - - 5 1072.0 3.0 2.831 0.3 379.3 0.0 -4,-6 0.2951 30 11.0 ALTERNATIVE:2 ENSMUSG00000031078 Cttn ENSMUST00000033407 ENSMUSP00000033407 TRANSLATION protein_coding - CCDS57599.1 1 509.0 0.0 1.75 15.2 452.6 0.0 -4,-5 0.8771 20 12.046 MINOR ENSMUSG00000031078 Cttn ENSMUST00000150607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031078 Cttn ENSMUST00000126018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031078 Cttn ENSMUST00000103079 ENSMUSP00000099368 TRANSLATION protein_coding - CCDS22049.1 1 546.0 0.0 1.75 11.2 518.5 0.0 -4,-5 1.0 22 14.872 PRINCIPAL:1 ENSMUSG00000031078 Cttn ENSMUST00000148778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031078 Cttn ENSMUST00000134131 - NO_TRANSLATION retained_intron ENSMUSG00000031078 Cttn ENSMUST00000157079 - NO_TRANSLATION retained_intron ENSMUSG00000035227 Spcs2 ENSMUST00000207137 ENSMUSP00000146562 TRANSLATION protein_coding - - 5 123.0 0.0 1.785 0.0 96.9 2.0 -3,-5 0.0013 6 4.488 MINOR ENSMUSG00000035227 Spcs2 ENSMUST00000208939 - NO_TRANSLATION retained_intron ENSMUSG00000035227 Spcs2 ENSMUST00000207063 ENSMUSP00000146514 TRANSLATION protein_coding - - 2 190.0 0.0 2.385 1.1 154.6 4.0 -4,-5 0.1981 9 8.04 ALTERNATIVE:2 ENSMUSG00000035227 Spcs2 ENSMUST00000209032 ENSMUSP00000146406 TRANSLATION protein_coding - - 5 260.0 0.0 2.385 0.0 154.6 4.0 -4,-7 0.0542 10 8.0 ALTERNATIVE:2 ENSMUSG00000035227 Spcs2 ENSMUST00000208465 ENSMUSP00000146574 TRANSLATION protein_coding - - 5 74.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 3 0.0 MINOR ENSMUSG00000035227 Spcs2 ENSMUST00000207406 ENSMUSP00000146850 TRANSLATION nonsense_mediated_decay - - 5 177.0 0.0 1.785 0.0 109.9 4.0 -4,-7 0.0055 7 -2.0 MINOR ENSMUSG00000035227 Spcs2 ENSMUST00000207580 ENSMUSP00000147206 TRANSLATION protein_coding - - 5 123.0 0.0 1.785 0.0 96.9 2.0 -3,-5 0.0013 6 4.488 MINOR ENSMUSG00000035227 Spcs2 ENSMUST00000208477 ENSMUSP00000147025 TRANSLATION protein_coding start - 5 252.0 0.0 2.385 0.0 154.6 4.0 -4,-5 0.0483 10 -2.0 MINOR ENSMUSG00000035227 Spcs2 ENSMUST00000208562 - NO_TRANSLATION retained_intron ENSMUSG00000035227 Spcs2 ENSMUST00000036274 ENSMUSP00000041152 TRANSLATION protein_coding - CCDS40033.1 1 226.0 0.0 2.385 3.5 154.6 4.0 -4,-7 1.0 10 9.0 PRINCIPAL:2 ENSMUSG00000074405 Zfp865 ENSMUST00000085427 ENSMUSP00000082550 TRANSLATION protein_coding - CCDS71884.1 1 756.0 44.0 0.2 0.0 179.4 0.0 -4,-5 0.0504 4 3.276 MINOR ENSMUSG00000074405 Zfp865 ENSMUST00000076251 ENSMUSP00000075601 TRANSLATION protein_coding - CCDS20753.1 1 1058.0 80.0 0.8 0.1 249.8 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000074405 Zfp865 ENSMUST00000207193 - NO_TRANSLATION retained_intron ENSMUSG00000074405 Zfp865 ENSMUST00000207362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074405 Zfp865 ENSMUST00000207845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030806 Stx1b ENSMUST00000156135 ENSMUSP00000145698 TRANSLATION protein_coding start - 5 139.0 0.0 3.08 0.0 156.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030806 Stx1b ENSMUST00000106267 ENSMUSP00000101874 TRANSLATION protein_coding - CCDS40146.1 1 288.0 0.0 7.845 33.9 293.3 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000096813 Vmn1r126 ENSMUST00000168398 ENSMUSP00000131376 TRANSLATION protein_coding - CCDS52094.1 - 321.0 0.0 0.0 0.0 58.8 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062040 Zfp27 ENSMUST00000159920 ENSMUSP00000125232 TRANSLATION protein_coding - CCDS21076.1 5 819.0 87.0 1.0 0.0 512.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000062040 Zfp27 ENSMUST00000053521 ENSMUSP00000054012 TRANSLATION protein_coding - CCDS21076.1 1 819.0 87.0 1.0 0.0 512.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000062040 Zfp27 ENSMUST00000161904 ENSMUSP00000124684 TRANSLATION protein_coding - CCDS21076.1 1 819.0 87.0 1.0 0.0 512.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000062040 Zfp27 ENSMUST00000172448 ENSMUSP00000127677 TRANSLATION protein_coding - CCDS21076.1 3 819.0 87.0 1.0 0.0 512.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000062040 Zfp27 ENSMUST00000160411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062040 Zfp27 ENSMUST00000162592 ENSMUSP00000123953 TRANSLATION protein_coding - CCDS21076.1 1 819.0 87.0 1.0 0.0 512.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000025478 Dpysl4 ENSMUST00000154273 - NO_TRANSLATION retained_intron ENSMUSG00000025478 Dpysl4 ENSMUST00000122844 - NO_TRANSLATION retained_intron ENSMUSG00000025478 Dpysl4 ENSMUST00000145499 ENSMUSP00000117764 TRANSLATION protein_coding stop - 5 156.0 3.0 4.0 0.0 54.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000025478 Dpysl4 ENSMUST00000026551 ENSMUSP00000026551 TRANSLATION protein_coding - CCDS21951.1 1 572.0 3.0 12.38 28.2 133.4 0.0 -4,-6 1.0 26 19.0 PRINCIPAL:1 ENSMUSG00000025478 Dpysl4 ENSMUST00000121184 ENSMUSP00000112896 TRANSLATION protein_coding - - 1 593.0 3.0 11.88 0.0 133.4 0.0 -4,-2 0.0532 26 13.998 MINOR ENSMUSG00000025478 Dpysl4 ENSMUST00000139364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044705 Or52e18 ENSMUST00000050482 ENSMUSP00000060289 TRANSLATION protein_coding - CCDS21634.1 - 312.0 0.0 1.0 11.8 402.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044705 Or52e18 ENSMUST00000214216 ENSMUSP00000151138 TRANSLATION protein_coding - CCDS21634.1 5 312.0 0.0 1.0 11.8 402.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030368 Ceacam11 ENSMUST00000094799 ENSMUSP00000092393 TRANSLATION protein_coding - CCDS20865.1 1 303.0 0.0 0.88 0.0 30.1 0.0 -3,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000001918 Slc1a5 ENSMUST00000141349 - NO_TRANSLATION retained_intron ENSMUSG00000001918 Slc1a5 ENSMUST00000134407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001918 Slc1a5 ENSMUST00000206444 - NO_TRANSLATION retained_intron ENSMUSG00000001918 Slc1a5 ENSMUST00000131664 - NO_TRANSLATION retained_intron ENSMUSG00000001918 Slc1a5 ENSMUST00000108496 ENSMUSP00000104136 TRANSLATION protein_coding - CCDS39785.1 1 555.0 0.0 5.855 0.0 400.9 0.0 -4,-6 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000001918 Slc1a5 ENSMUST00000147814 - NO_TRANSLATION retained_intron ENSMUSG00000001918 Slc1a5 ENSMUST00000135817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001918 Slc1a5 ENSMUST00000127401 - NO_TRANSLATION retained_intron ENSMUSG00000063802 Hspbp1 ENSMUST00000206708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063802 Hspbp1 ENSMUST00000205952 ENSMUSP00000145960 TRANSLATION protein_coding stop - 5 275.0 0.0 3.33 0.0 37.9 0.0 -4,-7 0.0076 8 -2.0 MINOR ENSMUSG00000063802 Hspbp1 ENSMUST00000079970 ENSMUSP00000078886 TRANSLATION protein_coding - CCDS20740.1 1 357.0 0.0 5.83 7.0 37.9 0.0 -4,-7 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000063802 Hspbp1 ENSMUST00000206306 ENSMUSP00000145954 TRANSLATION protein_coding stop - 2 211.0 0.0 2.0 0.0 37.9 0.0 -4,-7 0.0075 4 -2.0 MINOR ENSMUSG00000063802 Hspbp1 ENSMUST00000206946 ENSMUSP00000146248 TRANSLATION protein_coding stop - 2 256.0 0.0 2.0 0.0 37.9 0.0 -4,-1 0.0136 4 -2.0 MINOR ENSMUSG00000063802 Hspbp1 ENSMUST00000205474 ENSMUSP00000145614 TRANSLATION protein_coding start - 5 97.0 0.0 2.08 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000019734 Tmc4 ENSMUST00000130689 - NO_TRANSLATION retained_intron ENSMUSG00000019734 Tmc4 ENSMUST00000148313 - NO_TRANSLATION retained_intron ENSMUSG00000019734 Tmc4 ENSMUST00000144751 - NO_TRANSLATION retained_intron ENSMUSG00000019734 Tmc4 ENSMUST00000121743 ENSMUSP00000112541 TRANSLATION protein_coding - - 1 627.0 0.0 0.0 0.0 134.7 9.0 -4,-1 0.7573 4 2.0 PRINCIPAL:2 ENSMUSG00000019734 Tmc4 ENSMUST00000038743 ENSMUSP00000043853 TRANSLATION protein_coding - CCDS20723.1 1 694.0 0.0 0.0 0.0 134.7 9.0 -4,-2 0.3579 6 2.0 ALTERNATIVE:2 ENSMUSG00000019734 Tmc4 ENSMUST00000136678 - NO_TRANSLATION retained_intron ENSMUSG00000019734 Tmc4 ENSMUST00000145034 ENSMUSP00000146134 TRANSLATION protein_coding start - 3 62.0 0.0 0.0 0.0 0.0 2.0 2,-2 0.0048 - -2.0 MINOR ENSMUSG00000092592 Gm20449 ENSMUST00000094532 ENSMUSP00000092110 TRANSLATION nonsense_mediated_decay,RT - - 2 39.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.5854 - -2.0 PRINCIPAL:1 ENSMUSG00000030850 Ate1 ENSMUST00000216011 ENSMUSP00000148888 TRANSLATION protein_coding - - 5 559.0 2.0 5.93 2.9 281.2 0.0 -4,-5 0.4935 10 10.604 ALTERNATIVE:2 ENSMUSG00000030850 Ate1 ENSMUST00000094017 ENSMUSP00000091556 TRANSLATION protein_coding - CCDS21901.1 1 509.0 0.0 4.93 7.3 282.2 0.0 -4,-5 0.9813 11 8.002 MINOR ENSMUSG00000030850 Ate1 ENSMUST00000207141 ENSMUSP00000147239 TRANSLATION nonsense_mediated_decay - - 5 55.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000030850 Ate1 ENSMUST00000208116 - NO_TRANSLATION retained_intron ENSMUSG00000030850 Ate1 ENSMUST00000207041 ENSMUSP00000147132 TRANSLATION protein_coding start - 5 242.0 0.0 4.93 0.0 154.7 0.0 -4,-2 0.0003 4 -2.0 MINOR ENSMUSG00000030850 Ate1 ENSMUST00000033139 ENSMUSP00000033139 TRANSLATION protein_coding - CCDS21902.1 1 516.0 2.0 4.93 7.3 284.4 0.0 -4,-5 1.0 10 10.002 PRINCIPAL:3 ENSMUSG00000030850 Ate1 ENSMUST00000035458 ENSMUSP00000043365 TRANSLATION protein_coding - CCDS52414.1 1 516.0 2.0 5.13 7.3 281.2 0.0 -4,-5 0.9637 9 10.398 ALTERNATIVE:1 ENSMUSG00000030850 Ate1 ENSMUST00000178534 ENSMUSP00000136956 TRANSLATION protein_coding - CCDS72051.1 1 509.0 0.0 5.13 7.3 279.0 0.0 -4,-5 0.9839 10 8.398 MINOR ENSMUSG00000073965 Or51f2 ENSMUST00000098216 ENSMUSP00000095818 TRANSLATION protein_coding - CCDS21549.1 - 313.0 0.0 1.0 13.7 373.1 0.0 -3,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000055150 Zfp78 ENSMUST00000086323 ENSMUSP00000083503 TRANSLATION protein_coding - CCDS20775.1 5 480.0 44.0 2.0 0.0 314.7 0.0 -4,-7 0.1388 - 16.284 MINOR ENSMUSG00000055150 Zfp78 ENSMUST00000208390 ENSMUSP00000147228 TRANSLATION protein_coding - CCDS20775.1 1 480.0 44.0 2.0 0.0 314.7 0.0 -4,-7 0.1388 - 16.284 MINOR ENSMUSG00000055150 Zfp78 ENSMUST00000207314 ENSMUSP00000146578 TRANSLATION protein_coding - CCDS20775.1 1 480.0 44.0 2.0 0.0 314.7 0.0 -4,-7 0.1388 - 16.284 MINOR ENSMUSG00000055150 Zfp78 ENSMUST00000207347 ENSMUSP00000147154 TRANSLATION protein_coding - CCDS20774.1 1 512.0 44.0 2.8 0.0 314.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000055150 Zfp78 ENSMUST00000108559 ENSMUSP00000104199 TRANSLATION protein_coding - CCDS20774.1 2 512.0 44.0 2.8 0.0 314.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000055150 Zfp78 ENSMUST00000208030 ENSMUSP00000146592 TRANSLATION protein_coding - CCDS20775.1 1 480.0 44.0 2.0 0.0 314.7 0.0 -4,-7 0.1388 - 16.284 MINOR ENSMUSG00000055150 Zfp78 ENSMUST00000208763 ENSMUSP00000146611 TRANSLATION protein_coding stop - 5 129.0 0.0 1.8 0.0 83.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053198 Prx ENSMUST00000098644 ENSMUSP00000096241 TRANSLATION protein_coding - CCDS21023.1 1 1391.0 0.0 2.0 0.0 28.0 0.0 -4,-5 0.5339 38 6.0 ALTERNATIVE:2 ENSMUSG00000053198 Prx ENSMUST00000238964 ENSMUSP00000159082 TRANSLATION protein_coding stop - - 1525.0 0.0 2.0 0.0 28.0 0.0 -3,0 0.3297 38 -2.0 MINOR ENSMUSG00000053198 Prx ENSMUST00000125990 ENSMUSP00000145598 TRANSLATION protein_coding - - 1 1252.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0522 33 0.0 MINOR ENSMUSG00000053198 Prx ENSMUST00000238936 ENSMUSP00000158878 TRANSLATION protein_coding - CCDS21023.1 - 1391.0 0.0 2.0 0.0 28.0 0.0 -4,-5 0.5339 38 6.0 ALTERNATIVE:2 ENSMUSG00000053198 Prx ENSMUST00000108355 ENSMUSP00000103992 TRANSLATION protein_coding - CCDS39849.1 1 148.0 0.0 2.0 2.1 28.0 0.0 -4,-5 1.0 5 7.0 PRINCIPAL:2 ENSMUSG00000053198 Prx ENSMUST00000065487 ENSMUSP00000066110 TRANSLATION protein_coding - - 1 1391.0 0.0 2.0 0.0 28.0 0.0 -4,-5 0.3091 38 6.0 ALTERNATIVE:2 ENSMUSG00000054893 Zfp667 ENSMUST00000086327 ENSMUSP00000083507 TRANSLATION protein_coding - CCDS20773.1 1 609.0 56.0 2.24 5.3 317.6 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000054893 Zfp667 ENSMUST00000170776 ENSMUSP00000128658 TRANSLATION protein_coding - CCDS20773.1 1 609.0 56.0 2.24 5.3 317.6 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000054893 Zfp667 ENSMUST00000147784 - NO_TRANSLATION retained_intron ENSMUSG00000054893 Zfp667 ENSMUST00000153840 ENSMUSP00000146573 TRANSLATION protein_coding - - 3 89.0 0.0 1.6 0.0 84.6 0.0 -4,-6 0.0 - 4.284 MINOR ENSMUSG00000054893 Zfp667 ENSMUST00000108562 ENSMUSP00000104202 TRANSLATION protein_coding - CCDS20773.1 2 609.0 56.0 2.24 5.3 317.6 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000030432 Rpl28 ENSMUST00000078432 ENSMUSP00000104217 TRANSLATION protein_coding - CCDS39742.1 2 137.0 0.0 4.0 30.9 124.0 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000030432 Rpl28 ENSMUST00000032597 ENSMUSP00000032597 TRANSLATION protein_coding - CCDS39742.1 1 137.0 0.0 4.0 30.9 124.0 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000030432 Rpl28 ENSMUST00000129888 - NO_TRANSLATION retained_intron ENSMUSG00000030432 Rpl28 ENSMUST00000206617 - NO_TRANSLATION retained_intron ENSMUSG00000030432 Rpl28 ENSMUST00000126794 ENSMUSP00000117699 TRANSLATION protein_coding start - 2 85.0 0.0 1.75 0.0 40.8 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000038503 Mesd ENSMUST00000094215 ENSMUSP00000091768 TRANSLATION protein_coding - CCDS21415.1 1 224.0 0.0 3.33 5.5 272.6 0.0 3,-1 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000038503 Mesd ENSMUST00000130103 ENSMUSP00000114218 TRANSLATION protein_coding stop - 5 154.0 0.0 2.0 0.0 183.5 0.0 0,-3 0.0 5 -2.0 MINOR ENSMUSG00000038503 Mesd ENSMUST00000153377 ENSMUSP00000115696 TRANSLATION nonsense_mediated_decay start - 3 77.0 0.0 1.0 0.0 30.3 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000038503 Mesd ENSMUST00000138803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038503 Mesd ENSMUST00000207373 - NO_TRANSLATION retained_intron ENSMUSG00000059119 Nap1l4 ENSMUST00000208282 - NO_TRANSLATION retained_intron ENSMUSG00000059119 Nap1l4 ENSMUST00000207870 ENSMUSP00000146639 TRANSLATION protein_coding stop - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059119 Nap1l4 ENSMUST00000072727 ENSMUSP00000072510 TRANSLATION protein_coding - CCDS40197.1 1 375.0 0.0 6.519 10.0 343.2 0.0 -4,-5 0.8752 10 14.068 MINOR ENSMUSG00000059119 Nap1l4 ENSMUST00000209098 ENSMUSP00000146474 TRANSLATION protein_coding - CCDS85479.1 1 386.0 0.0 6.519 18.4 343.2 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000059119 Nap1l4 ENSMUST00000208093 ENSMUSP00000147062 TRANSLATION protein_coding stop - 3 75.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000059119 Nap1l4 ENSMUST00000208190 ENSMUSP00000147130 TRANSLATION protein_coding - CCDS85479.1 1 386.0 0.0 6.519 18.4 343.2 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000059119 Nap1l4 ENSMUST00000207244 - NO_TRANSLATION retained_intron ENSMUSG00000059119 Nap1l4 ENSMUST00000208317 ENSMUSP00000147149 TRANSLATION protein_coding start/stop - 3 219.0 0.0 4.99 0.0 275.5 0.0 -4,-5 0.0007 5 -2.0 MINOR ENSMUSG00000059119 Nap1l4 ENSMUST00000207948 ENSMUSP00000146710 TRANSLATION protein_coding stop - 2 58.0 0.0 1.0 0.0 71.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000109516 Gm6882 ENSMUST00000207192 ENSMUSP00000146341 TRANSLATION protein_coding - - 5 313.0 17.0 1.0 0.0 235.8 0.0 -4,-5 0.8066 - 18.0 PRINCIPAL:1 ENSMUSG00000023159 Psg29 ENSMUST00000075934 ENSMUSP00000075320 TRANSLATION protein_coding - CCDS20862.1 1 468.0 0.0 2.88 0.4 142.6 0.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025724 Sec11a ENSMUST00000147813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025724 Sec11a ENSMUST00000136556 - NO_TRANSLATION retained_intron ENSMUSG00000025724 Sec11a ENSMUST00000026818 ENSMUSP00000026818 TRANSLATION protein_coding - CCDS21401.1 1 179.0 0.0 4.0 35.5 0.0 1.0 -4,-7 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000025724 Sec11a ENSMUST00000150049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025724 Sec11a ENSMUST00000120285 ENSMUSP00000112944 TRANSLATION protein_coding - - 3 247.0 0.0 3.5 0.0 0.0 1.0 -4,-7 0.0118 6 4.998 MINOR ENSMUSG00000025724 Sec11a ENSMUST00000147881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025724 Sec11a ENSMUST00000130981 - NO_TRANSLATION retained_intron ENSMUSG00000025724 Sec11a ENSMUST00000119980 ENSMUSP00000112425 TRANSLATION protein_coding - - 2 170.0 0.0 3.5 0.0 0.0 1.0 -4,-7 0.0128 6 4.998 MINOR ENSMUSG00000025724 Sec11a ENSMUST00000117383 ENSMUSP00000113601 TRANSLATION protein_coding - - 2 190.0 0.0 3.67 0.0 0.0 1.0 -4,-7 0.0108 6 5.34 MINOR ENSMUSG00000025724 Sec11a ENSMUST00000153053 - NO_TRANSLATION retained_intron ENSMUSG00000074419 Pira13 ENSMUST00000094911 ENSMUSP00000092515 TRANSLATION protein_coding stop - 5 519.0 0.0 5.0 0.0 132.2 0.0 2,-3 0.1088 - -2.0 MINOR ENSMUSG00000074419 Pira13 ENSMUST00000108619 ENSMUSP00000104259 TRANSLATION protein_coding - - 5 665.0 0.0 6.1 0.1 132.2 0.0 2,-3 0.321 - 8.0 ALTERNATIVE:2 ENSMUSG00000074419 Pira13 ENSMUST00000108620 ENSMUSP00000104260 TRANSLATION protein_coding - - 5 564.0 0.0 5.1 0.0 132.2 0.0 2,-3 0.1121 - 6.002 MINOR ENSMUSG00000074419 Pira13 ENSMUST00000153846 ENSMUSP00000121707 TRANSLATION protein_coding - - 5 682.0 0.0 6.1 0.4 132.2 0.0 2,-3 0.8581 - 8.0 PRINCIPAL:2 ENSMUSG00000030606 Hapln3 ENSMUST00000205782 ENSMUSP00000145726 TRANSLATION protein_coding - - 5 250.0 0.0 4.0 0.0 152.1 0.0 4,-1 0.0005 2 2.502 MINOR ENSMUSG00000030606 Hapln3 ENSMUST00000206092 ENSMUSP00000146090 TRANSLATION protein_coding - CCDS21378.1 1 359.0 0.0 5.75 2.2 272.3 0.0 4,-1 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000030606 Hapln3 ENSMUST00000206402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030606 Hapln3 ENSMUST00000032827 ENSMUSP00000032827 TRANSLATION nonsense_mediated_decay - - 5 113.0 0.0 1.0 0.0 0.0 0.0 4,-1 0.0008 - -2.0 MINOR ENSMUSG00000025509 Pnpla2 ENSMUST00000169723 - NO_TRANSLATION retained_intron ENSMUSG00000025509 Pnpla2 ENSMUST00000064151 ENSMUSP00000065116 TRANSLATION protein_coding - CCDS22015.1 1 430.0 0.0 4.45 0.0 51.0 0.0 -4,-7 0.2027 12 6.0 ALTERNATIVE:2 ENSMUSG00000025509 Pnpla2 ENSMUST00000164016 ENSMUSP00000127149 TRANSLATION protein_coding - CCDS52445.1 1 486.0 0.0 4.45 2.2 51.0 0.0 -4,-7 1.0 15 7.0 PRINCIPAL:2 ENSMUSG00000025509 Pnpla2 ENSMUST00000169665 ENSMUSP00000127983 TRANSLATION protein_coding stop - 5 305.0 0.0 3.45 0.0 35.7 0.0 -4,-7 0.0037 8 -2.0 MINOR ENSMUSG00000025509 Pnpla2 ENSMUST00000165487 ENSMUSP00000132038 TRANSLATION protein_coding stop - 3 158.0 0.0 2.45 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025509 Pnpla2 ENSMUST00000164924 ENSMUSP00000129632 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 0.965 0.0 35.2 0.0 -4,-7 0.0007 - -2.0 MINOR ENSMUSG00000025509 Pnpla2 ENSMUST00000026583 ENSMUSP00000026583 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 0.965 0.0 35.2 0.0 -4,-7 0.0007 - -2.0 MINOR ENSMUSG00000072259 Gm5592 ENSMUST00000097044 ENSMUSP00000094809 TRANSLATION protein_coding - CCDS52209.1 1 857.0 0.0 0.0 0.0 187.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000072259 Gm5592 ENSMUST00000206490 ENSMUSP00000145899 TRANSLATION protein_coding - - 5 857.0 0.0 0.0 0.0 187.5 0.0 -4,-5 0.6896 - 6.0 PRINCIPAL:1 ENSMUSG00000049600 Zbtb45 ENSMUST00000209997 ENSMUSP00000147653 TRANSLATION protein_coding stop - 3 168.0 0.0 1.45 0.0 76.0 0.0 -4,-6 0.0004 1 -2.0 MINOR ENSMUSG00000049600 Zbtb45 ENSMUST00000210282 ENSMUSP00000147298 TRANSLATION protein_coding - CCDS20822.1 1 520.0 16.0 2.25 2.8 152.4 0.0 -4,-6 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000049600 Zbtb45 ENSMUST00000210108 ENSMUSP00000147835 TRANSLATION protein_coding stop - 2 27.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049600 Zbtb45 ENSMUST00000051390 ENSMUSP00000056086 TRANSLATION protein_coding - CCDS20822.1 1 520.0 16.0 2.25 2.8 152.4 0.0 -4,-6 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000078611 Gm5901 ENSMUST00000211523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078611 Gm5901 ENSMUST00000209233 ENSMUSP00000147919 TRANSLATION protein_coding start - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078611 Gm5901 ENSMUST00000106805 ENSMUSP00000102417 TRANSLATION protein_coding - CCDS57573.1 5 333.0 0.0 0.0 9.6 471.3 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000051515 Fam181b ENSMUST00000051179 ENSMUSP00000146473 TRANSLATION protein_coding - - - 417.0 0.0 0.0 0.4 77.2 0.0 -4,-7 0.7227 - 6.0 PRINCIPAL:1 ENSMUSG00000030701 Plekhb1 ENSMUST00000139708 ENSMUSP00000122333 TRANSLATION protein_coding stop - 5 149.0 10.0 3.08 0.0 37.5 0.0 -3,0 0.0067 4 -2.0 MINOR ENSMUSG00000030701 Plekhb1 ENSMUST00000138830 ENSMUSP00000116888 TRANSLATION protein_coding stop - 2 122.0 10.0 3.08 0.0 37.5 0.0 -3,0 0.0074 3 -2.0 MINOR ENSMUSG00000030701 Plekhb1 ENSMUST00000151123 ENSMUSP00000115559 TRANSLATION protein_coding stop - 5 239.0 10.0 3.48 5.8 35.2 0.0 -4,-5 0.2636 3 -2.0 MINOR ENSMUSG00000030701 Plekhb1 ENSMUST00000116287 ENSMUSP00000111991 TRANSLATION protein_coding - CCDS52325.1 3 224.0 10.0 3.48 9.2 35.2 0.0 -3,0 0.4144 3 19.11 MINOR ENSMUSG00000030701 Plekhb1 ENSMUST00000107047 ENSMUSP00000102662 TRANSLATION protein_coding - CCDS52326.1 1 208.0 10.0 3.08 5.8 35.2 0.0 -4,-5 0.249 4 17.7 MINOR ENSMUSG00000030701 Plekhb1 ENSMUST00000107045 ENSMUSP00000102660 TRANSLATION protein_coding - CCDS52325.1 1 224.0 10.0 3.48 9.2 35.2 0.0 -3,0 0.4144 3 19.11 MINOR ENSMUSG00000030701 Plekhb1 ENSMUST00000208812 ENSMUSP00000146508 TRANSLATION protein_coding stop - 5 90.0 9.0 1.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030701 Plekhb1 ENSMUST00000135255 - NO_TRANSLATION retained_intron ENSMUSG00000030701 Plekhb1 ENSMUST00000079176 ENSMUSP00000078175 TRANSLATION protein_coding - CCDS21504.1 1 243.0 10.0 3.48 5.8 35.2 0.0 -4,-5 0.3293 3 18.498 MINOR ENSMUSG00000030701 Plekhb1 ENSMUST00000107044 ENSMUSP00000102659 TRANSLATION protein_coding - CCDS52324.1 1 189.0 10.0 3.08 23.2 37.5 0.0 -3,0 1.0 4 21.202 PRINCIPAL:1 ENSMUSG00000030701 Plekhb1 ENSMUST00000107043 ENSMUSP00000102658 TRANSLATION protein_coding - CCDS80756.1 2 134.0 10.0 2.646 0.0 28.0 0.0 -3,1 0.0254 2 14.814 MINOR ENSMUSG00000030701 Plekhb1 ENSMUST00000107046 ENSMUSP00000102661 TRANSLATION protein_coding - CCDS52324.1 1 189.0 10.0 3.08 23.2 37.5 0.0 -3,0 1.0 4 21.202 PRINCIPAL:1 ENSMUSG00000074417 Pira12 ENSMUST00000070639 ENSMUSP00000070073 TRANSLATION protein_coding - - 5 680.0 0.0 6.0 0.4 128.4 0.0 2,-4 0.8389 - 12.0 PRINCIPAL:1 ENSMUSG00000032875 Arhgef17 ENSMUST00000209041 ENSMUSP00000146564 TRANSLATION protein_coding - - 1 1048.0 0.0 4.89175 0.0 144.4 0.0 -4,-6 0.9518 13 8.0 ALTERNATIVE:2 ENSMUSG00000032875 Arhgef17 ENSMUST00000107032 ENSMUSP00000102647 TRANSLATION protein_coding - CCDS40040.1 5 2057.0 0.0 4.82575 0.1 144.4 0.0 -4,-7 0.825 27 7.868 PRINCIPAL:3 ENSMUSG00000032875 Arhgef17 ENSMUST00000208482 ENSMUSP00000146907 TRANSLATION protein_coding start/stop - 3 278.0 0.0 0.87575 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032875 Arhgef17 ENSMUST00000208735 - NO_TRANSLATION retained_intron ENSMUSG00000040525 Cblc ENSMUST00000043822 ENSMUSP00000039955 TRANSLATION protein_coding - CCDS39804.1 1 496.0 5.0 7.25 1.6 430.5 0.0 -4,-1 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000040525 Cblc ENSMUST00000108449 ENSMUSP00000104088 TRANSLATION protein_coding - CCDS52064.1 1 452.0 5.0 6.25 0.0 393.9 0.0 -4,-1 0.0329 4 12.806 MINOR ENSMUSG00000040525 Cblc ENSMUST00000148416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040525 Cblc ENSMUST00000145755 - NO_TRANSLATION retained_intron ENSMUSG00000040525 Cblc ENSMUST00000125050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040525 Cblc ENSMUST00000131276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040525 Cblc ENSMUST00000131602 - NO_TRANSLATION retained_intron ENSMUSG00000070423 Or51e1 ENSMUST00000094124 ENSMUSP00000091674 TRANSLATION protein_coding - CCDS21543.1 1 317.0 0.0 1.0 12.0 388.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030929 Eri2 ENSMUST00000125595 - NO_TRANSLATION retained_intron ENSMUSG00000030929 Eri2 ENSMUST00000063902 ENSMUSP00000068633 TRANSLATION protein_coding - - 1 274.0 11.0 4.63 0.0 89.4 0.0 -4,0 0.0331 - 14.04 MINOR ENSMUSG00000030929 Eri2 ENSMUST00000033224 ENSMUSP00000033224 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.15 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000030929 Eri2 ENSMUST00000139192 ENSMUSP00000117940 TRANSLATION nonsense_mediated_decay - - 1 160.0 4.0 2.55 0.0 51.8 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000030929 Eri2 ENSMUST00000133926 - NO_TRANSLATION retained_intron ENSMUSG00000030929 Eri2 ENSMUST00000150844 ENSMUSP00000120547 TRANSLATION protein_coding - CCDS40107.1 1 688.0 11.0 4.48 5.5 155.4 0.0 -4,0 1.0 - 19.7 PRINCIPAL:1 ENSMUSG00000030929 Eri2 ENSMUST00000106523 ENSMUSP00000102133 TRANSLATION protein_coding - - 1 257.0 11.0 4.48 0.0 89.4 0.0 -4,0 0.0157 - 13.74 MINOR ENSMUSG00000095276 Gfy ENSMUST00000179443 ENSMUSP00000135927 TRANSLATION protein_coding - CCDS57548.1 5 504.0 0.0 0.6 0.4 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095276 Gfy ENSMUST00000211004 ENSMUSP00000147535 TRANSLATION protein_coding stop - 3 272.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.1163 - -2.0 MINOR ENSMUSG00000094221 Vmn1r124 ENSMUST00000105200 ENSMUSP00000100835 TRANSLATION protein_coding - CCDS52092.1 - 307.0 0.0 0.0 0.4 49.9 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062132 Arhgap33os ENSMUST00000124276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062132 Arhgap33os ENSMUST00000238768 ENSMUSP00000158607 TRANSLATION protein_coding - - - 667.0 0.0 2.48 0.1 58.3 0.0 -4,-2 0.8086 - 12.0 PRINCIPAL:1 ENSMUSG00000090751 Vmn2r63 ENSMUST00000232761 ENSMUSP00000156900 TRANSLATION protein_coding - - - 461.0 0.0 1.06 0.0 139.2 0.0 2,-3 0.0012 - 1.002 MINOR ENSMUSG00000090751 Vmn2r63 ENSMUST00000233726 ENSMUSP00000156618 TRANSLATION protein_coding - - - 802.0 3.0 3.16 0.0 395.5 9.0 2,-3 0.1429 - 10.202 ALTERNATIVE:2 ENSMUSG00000090751 Vmn2r63 ENSMUST00000233303 ENSMUSP00000156576 TRANSLATION protein_coding - - - 783.0 3.0 2.86 0.0 394.8 9.0 2,-3 0.1128 - 9.602 MINOR ENSMUSG00000090751 Vmn2r63 ENSMUST00000163803 ENSMUSP00000129089 TRANSLATION protein_coding - CCDS52220.1 5 859.0 3.0 3.56 0.3 395.5 9.0 2,-3 1.0 - 11.0 PRINCIPAL:2 ENSMUSG00000047026 Acsm4 ENSMUST00000047045 ENSMUSP00000045160 TRANSLATION protein_coding - CCDS21784.1 1 580.0 19.0 11.22 18.2 356.4 0.0 -4,0 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000062028 Irgc1 ENSMUST00000206992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062028 Irgc1 ENSMUST00000205385 ENSMUSP00000146207 TRANSLATION protein_coding stop - 3 82.0 9.0 0.6 0.0 50.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000062028 Irgc1 ENSMUST00000205629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062028 Irgc1 ENSMUST00000205776 ENSMUSP00000145975 TRANSLATION protein_coding - CCDS39831.1 1 463.0 13.0 1.1 10.0 322.0 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000062028 Irgc1 ENSMUST00000080594 ENSMUSP00000104072 TRANSLATION protein_coding - CCDS39831.1 1 463.0 13.0 1.1 10.0 322.0 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000073925 Or52u1 ENSMUST00000210457 ENSMUSP00000147481 TRANSLATION protein_coding - - - 324.0 0.0 1.0 8.0 344.6 8.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073925 Or52u1 ENSMUST00000213984 ENSMUSP00000149640 TRANSLATION protein_coding - - 5 324.0 0.0 1.0 8.0 344.6 8.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073925 Or52u1 ENSMUST00000098173 ENSMUSP00000095775 TRANSLATION protein_coding - CCDS21620.1 - 341.0 0.0 1.0 0.0 344.6 8.0 -4,-7 0.3633 - 12.0 MINOR ENSMUSG00000060112 Or13a27 ENSMUST00000216027 ENSMUSP00000150685 TRANSLATION protein_coding - CCDS21973.1 5 311.0 0.0 1.0 3.8 171.0 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060112 Or13a27 ENSMUST00000215023 ENSMUSP00000150518 TRANSLATION protein_coding - CCDS21973.1 5 311.0 0.0 1.0 3.8 171.0 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060112 Or13a27 ENSMUST00000211031 ENSMUSP00000147996 TRANSLATION protein_coding - CCDS21973.1 3 311.0 0.0 1.0 3.8 171.0 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060112 Or13a27 ENSMUST00000210932 ENSMUSP00000147557 TRANSLATION protein_coding - CCDS21973.1 2 311.0 0.0 1.0 3.8 171.0 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060112 Or13a27 ENSMUST00000075470 ENSMUSP00000074916 TRANSLATION protein_coding - CCDS21973.1 - 311.0 0.0 1.0 3.8 171.0 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000073982 Rhog ENSMUST00000106923 ENSMUSP00000102536 TRANSLATION protein_coding - CCDS21529.1 5 191.0 24.0 2.0 36.9 193.8 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000073982 Rhog ENSMUST00000209968 ENSMUSP00000147985 TRANSLATION protein_coding stop - 3 83.0 13.0 1.0 0.0 109.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000073982 Rhog ENSMUST00000098230 ENSMUSP00000095832 TRANSLATION protein_coding - CCDS21529.1 1 191.0 24.0 2.0 36.9 193.8 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000049571 Cfap46 ENSMUST00000155075 ENSMUSP00000120463 TRANSLATION nonsense_mediated_decay - - 1 343.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0621 - -2.0 MINOR ENSMUSG00000049571 Cfap46 ENSMUST00000130453 ENSMUSP00000115437 TRANSLATION protein_coding stop - 3 226.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0376 - -2.0 MINOR ENSMUSG00000049571 Cfap46 ENSMUST00000166503 - NO_TRANSLATION retained_intron ENSMUSG00000049571 Cfap46 ENSMUST00000129990 ENSMUSP00000120186 TRANSLATION protein_coding - - 5 2641.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.8629 - 6.0 PRINCIPAL:1 ENSMUSG00000049571 Cfap46 ENSMUST00000156116 - NO_TRANSLATION retained_intron ENSMUSG00000049571 Cfap46 ENSMUST00000138129 - NO_TRANSLATION retained_intron ENSMUSG00000049571 Cfap46 ENSMUST00000196540 ENSMUSP00000143590 TRANSLATION protein_coding start - 1 164.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0223 - -2.0 MINOR ENSMUSG00000049571 Cfap46 ENSMUST00000140820 ENSMUSP00000121085 TRANSLATION nonsense_mediated_decay - - 1 674.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0743 - -2.0 MINOR ENSMUSG00000049571 Cfap46 ENSMUST00000093991 - NO_TRANSLATION retained_intron ENSMUSG00000040583 Cyp2b13 ENSMUST00000005669 ENSMUSP00000005669 TRANSLATION protein_coding - CCDS21000.2 1 491.0 51.0 8.6 0.4 499.2 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030834 Abcc6 ENSMUST00000209985 - NO_TRANSLATION retained_intron ENSMUSG00000030834 Abcc6 ENSMUST00000211780 - NO_TRANSLATION retained_intron ENSMUSG00000030834 Abcc6 ENSMUST00000211220 ENSMUSP00000147676 TRANSLATION protein_coding start - 3 182.0 8.0 3.3 0.0 72.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030834 Abcc6 ENSMUST00000002850 ENSMUSP00000002850 TRANSLATION protein_coding - CCDS21272.1 1 1498.0 22.0 18.4315 0.1 382.7 0.0 -4,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000030834 Abcc6 ENSMUST00000210962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038618 Rassf7 ENSMUST00000141804 ENSMUSP00000115948 TRANSLATION protein_coding stop - 2 243.0 0.0 1.864 0.0 52.0 0.0 -4,-7 0.0187 2 -2.0 MINOR ENSMUSG00000038618 Rassf7 ENSMUST00000046890 ENSMUSP00000038444 TRANSLATION protein_coding - CCDS40182.1 1 359.0 0.0 1.864 5.0 52.0 0.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000038618 Rassf7 ENSMUST00000149548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038618 Rassf7 ENSMUST00000209760 - NO_TRANSLATION retained_intron ENSMUSG00000038618 Rassf7 ENSMUST00000209500 ENSMUSP00000147482 TRANSLATION protein_coding - - 5 383.0 0.0 1.864 0.0 52.0 0.0 -4,-7 0.0347 3 12.0 MINOR ENSMUSG00000038618 Rassf7 ENSMUST00000210993 ENSMUSP00000147782 TRANSLATION protein_coding stop - 5 116.0 0.0 1.864 0.0 52.0 0.0 -4,-7 0.019 1 -2.0 MINOR ENSMUSG00000038618 Rassf7 ENSMUST00000153081 ENSMUSP00000123128 TRANSLATION protein_coding stop - 2 199.0 0.0 1.864 0.0 52.0 0.0 -4,-7 0.0156 1 -2.0 MINOR ENSMUSG00000038618 Rassf7 ENSMUST00000133763 ENSMUSP00000118313 TRANSLATION protein_coding stop - 3 201.0 0.0 1.864 0.0 52.0 0.0 -4,-7 0.0156 1 -2.0 MINOR ENSMUSG00000038618 Rassf7 ENSMUST00000127613 ENSMUSP00000148079 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038618 Rassf7 ENSMUST00000148975 ENSMUSP00000118078 TRANSLATION protein_coding stop - 3 89.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000004056 Akt2 ENSMUST00000143347 - NO_TRANSLATION retained_intron ENSMUSG00000004056 Akt2 ENSMUST00000147263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004056 Akt2 ENSMUST00000108344 ENSMUSP00000103981 TRANSLATION protein_coding - CCDS21027.1 1 481.0 30.0 11.4 33.6 361.0 0.0 -4,-6 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000004056 Akt2 ENSMUST00000128540 ENSMUSP00000122716 TRANSLATION protein_coding stop - 5 98.0 9.0 2.66 0.0 51.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000004056 Akt2 ENSMUST00000108342 ENSMUSP00000103979 TRANSLATION protein_coding stop - 3 222.0 18.0 5.67 0.0 118.6 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000004056 Akt2 ENSMUST00000143499 ENSMUSP00000117119 TRANSLATION protein_coding stop - 3 63.0 1.0 1.99 0.0 30.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004056 Akt2 ENSMUST00000136962 ENSMUSP00000117682 TRANSLATION protein_coding stop - 5 229.0 18.0 5.84 0.0 117.1 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000004056 Akt2 ENSMUST00000108343 ENSMUSP00000103980 TRANSLATION protein_coding - CCDS21027.1 5 481.0 30.0 11.4 33.6 361.0 0.0 -4,-6 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000004056 Akt2 ENSMUST00000136981 - NO_TRANSLATION retained_intron ENSMUSG00000004056 Akt2 ENSMUST00000142365 ENSMUSP00000120978 TRANSLATION protein_coding stop - 3 84.0 8.0 2.33 0.0 42.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000004056 Akt2 ENSMUST00000051356 ENSMUSP00000052103 TRANSLATION protein_coding - CCDS21027.1 1 481.0 30.0 11.4 33.6 361.0 0.0 -4,-6 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000004056 Akt2 ENSMUST00000085917 ENSMUSP00000083081 TRANSLATION protein_coding - - 5 438.0 23.0 10.4 1.0 276.1 0.0 -4,-6 0.0102 10 6.24 MINOR ENSMUSG00000004056 Akt2 ENSMUST00000138459 ENSMUSP00000123204 TRANSLATION protein_coding stop - 5 67.0 8.0 1.83 0.0 33.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025474 Tubgcp2 ENSMUST00000026547 ENSMUSP00000026547 TRANSLATION protein_coding - CCDS21960.1 1 905.0 0.0 8.706 8.5 404.2 0.0 -4,-5 1.0 30 15.0 PRINCIPAL:1 ENSMUSG00000025474 Tubgcp2 ENSMUST00000211261 ENSMUSP00000147766 TRANSLATION nonsense_mediated_decay - - 3 83.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025474 Tubgcp2 ENSMUST00000211638 ENSMUSP00000147329 TRANSLATION protein_coding stop - 1 900.0 0.0 8.706 0.0 404.2 0.0 -4,-5 0.2459 30 -2.0 MINOR ENSMUSG00000025474 Tubgcp2 ENSMUST00000209930 - NO_TRANSLATION retained_intron ENSMUSG00000025474 Tubgcp2 ENSMUST00000210224 ENSMUSP00000147469 TRANSLATION nonsense_mediated_decay - - 1 205.0 0.0 1.95 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000025474 Tubgcp2 ENSMUST00000211186 - NO_TRANSLATION retained_intron ENSMUSG00000025474 Tubgcp2 ENSMUST00000209574 ENSMUSP00000147473 TRANSLATION protein_coding stop - 3 149.0 0.0 1.95 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000030544 Mesp1 ENSMUST00000032760 ENSMUSP00000032760 TRANSLATION protein_coding - CCDS21387.1 1 243.0 0.0 0.6 0.4 51.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030826 Bcat2 ENSMUST00000120864 ENSMUSP00000113045 TRANSLATION protein_coding - - 5 388.0 31.0 8.48 8.3 0.0 0.0 -3,-1 0.8081 12 15.0 ALTERNATIVE:1 ENSMUSG00000030826 Bcat2 ENSMUST00000210811 ENSMUSP00000148059 TRANSLATION protein_coding stop - 3 97.0 4.0 2.0 0.0 0.0 0.0 -4,-7 0.0064 4 -2.0 MINOR ENSMUSG00000030826 Bcat2 ENSMUST00000209204 ENSMUSP00000148152 TRANSLATION protein_coding - CCDS57549.1 1 353.0 31.0 8.0 7.4 0.0 0.0 -4,-6 0.7381 13 13.671 MINOR ENSMUSG00000030826 Bcat2 ENSMUST00000209410 ENSMUSP00000147303 TRANSLATION nonsense_mediated_decay start - 5 101.0 14.0 2.0 0.0 0.0 0.0 0,-3 0.0436 3 -2.0 MINOR ENSMUSG00000030826 Bcat2 ENSMUST00000033098 ENSMUSP00000033098 TRANSLATION protein_coding - CCDS21252.1 1 393.0 31.0 8.48 8.3 0.0 0.0 -3,-1 1.0 14 15.0 PRINCIPAL:3 ENSMUSG00000030826 Bcat2 ENSMUST00000209543 - NO_TRANSLATION retained_intron ENSMUSG00000030826 Bcat2 ENSMUST00000209569 - NO_TRANSLATION retained_intron ENSMUSG00000030826 Bcat2 ENSMUST00000211173 ENSMUSP00000147628 TRANSLATION protein_coding - CCDS57549.1 1 353.0 31.0 8.0 7.4 0.0 0.0 -4,-6 0.7381 13 13.671 MINOR ENSMUSG00000035547 Capn5 ENSMUST00000134638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035547 Capn5 ENSMUST00000155056 ENSMUSP00000116697 TRANSLATION protein_coding stop - 3 46.0 0.0 0.75 0.0 0.0 0.0 -3,-5 0.0 2 -2.0 MINOR ENSMUSG00000035547 Capn5 ENSMUST00000129430 ENSMUSP00000121200 TRANSLATION protein_coding stop - 2 27.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035547 Capn5 ENSMUST00000040971 ENSMUSP00000048183 TRANSLATION protein_coding - CCDS21465.1 1 640.0 9.0 7.68 33.5 540.0 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000035547 Capn5 ENSMUST00000107112 ENSMUSP00000102729 TRANSLATION protein_coding - CCDS21465.1 1 640.0 9.0 7.68 33.5 540.0 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000015957 Wnt11 ENSMUST00000165240 ENSMUSP00000131770 TRANSLATION nonsense_mediated_decay - - 1 154.0 0.0 3.712 1.0 90.7 0.0 0,-3 0.0113 1 -2.0 MINOR ENSMUSG00000015957 Wnt11 ENSMUST00000163913 ENSMUSP00000126428 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000015957 Wnt11 ENSMUST00000208062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015957 Wnt11 ENSMUST00000167303 ENSMUSP00000132166 TRANSLATION protein_coding - CCDS21475.1 1 354.0 0.0 6.91 13.7 355.0 0.0 0,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000015957 Wnt11 ENSMUST00000165122 ENSMUSP00000125789 TRANSLATION protein_coding stop - 3 99.0 0.0 2.25 0.0 41.3 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000015957 Wnt11 ENSMUST00000067495 ENSMUSP00000064333 TRANSLATION protein_coding - CCDS21475.1 5 354.0 0.0 6.91 13.7 355.0 0.0 0,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000070546 Mrgprb3 ENSMUST00000094383 ENSMUSP00000091945 TRANSLATION protein_coding - CCDS21304.1 - 312.0 0.0 0.8 0.0 24.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038888 Ctu1 ENSMUST00000038332 ENSMUSP00000036770 TRANSLATION protein_coding - CCDS21179.1 1 420.0 19.0 0.6 0.0 49.1 0.0 -3,1 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000033685 Ucp2 ENSMUST00000133498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033685 Ucp2 ENSMUST00000153287 ENSMUSP00000115953 TRANSLATION protein_coding stop - 2 112.0 0.0 2.75 0.0 72.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000033685 Ucp2 ENSMUST00000133044 ENSMUSP00000115598 TRANSLATION protein_coding stop - 3 172.0 0.0 3.75 0.0 117.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000033685 Ucp2 ENSMUST00000151221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033685 Ucp2 ENSMUST00000149808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033685 Ucp2 ENSMUST00000207748 ENSMUSP00000146337 TRANSLATION protein_coding stop - 5 271.0 0.0 6.08 1.0 191.5 0.0 -4,-7 0.042 2 -2.0 MINOR ENSMUSG00000033685 Ucp2 ENSMUST00000207890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033685 Ucp2 ENSMUST00000129324 ENSMUSP00000115648 TRANSLATION protein_coding stop - 5 65.0 0.0 1.75 0.0 33.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033685 Ucp2 ENSMUST00000126381 - NO_TRANSLATION retained_intron ENSMUSG00000033685 Ucp2 ENSMUST00000126534 ENSMUSP00000120967 TRANSLATION protein_coding - CCDS21498.1 1 309.0 0.0 7.08 34.9 226.6 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000033685 Ucp2 ENSMUST00000138673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030509 Asb7 ENSMUST00000207210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030509 Asb7 ENSMUST00000124899 ENSMUSP00000122395 TRANSLATION protein_coding - CCDS21346.1 1 318.0 0.0 3.0 30.9 172.3 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000030509 Asb7 ENSMUST00000207785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030509 Asb7 ENSMUST00000208059 - NO_TRANSLATION retained_intron ENSMUSG00000030509 Asb7 ENSMUST00000131320 ENSMUSP00000115921 TRANSLATION nonsense_mediated_decay - - 2 89.0 0.0 1.2 0.0 36.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030509 Asb7 ENSMUST00000068980 - NO_TRANSLATION retained_intron ENSMUSG00000015981 Stk32c ENSMUST00000165870 ENSMUSP00000126638 TRANSLATION protein_coding - CCDS52425.1 5 370.0 12.0 6.675 4.0 186.3 0.0 -4,-6 0.4803 3 12.038 MINOR ENSMUSG00000015981 Stk32c ENSMUST00000016125 ENSMUSP00000016125 TRANSLATION protein_coding - CCDS21952.1 1 488.0 19.0 7.505 3.6 213.5 0.0 -4,0 1.0 7 19.734 PRINCIPAL:1 ENSMUSG00000073923 Or56b1 ENSMUST00000213297 ENSMUSP00000150620 TRANSLATION protein_coding - CCDS21623.1 5 319.0 0.0 1.0 0.0 247.3 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073923 Or56b1 ENSMUST00000215454 ENSMUSP00000150070 TRANSLATION protein_coding - CCDS21623.1 5 319.0 0.0 1.0 0.0 247.3 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073923 Or56b1 ENSMUST00000098171 ENSMUSP00000095773 TRANSLATION protein_coding - CCDS21623.1 - 319.0 0.0 1.0 0.0 247.3 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050382 Kif7 ENSMUST00000178048 ENSMUSP00000136993 TRANSLATION protein_coding - CCDS80739.1 1 1348.0 12.0 3.04 0.4 342.9 0.0 -4,-6 0.9979 5 14.0 ALTERNATIVE:2 ENSMUSG00000050382 Kif7 ENSMUST00000184137 ENSMUSP00000139224 TRANSLATION protein_coding - CCDS52278.1 5 1347.0 12.0 3.04 0.4 342.9 0.0 -4,-6 1.0 5 14.0 PRINCIPAL:4 ENSMUSG00000050382 Kif7 ENSMUST00000183846 ENSMUSP00000139359 TRANSLATION protein_coding - CCDS80739.1 5 1348.0 12.0 3.04 0.4 342.9 0.0 -4,-6 0.9979 5 14.0 ALTERNATIVE:2 ENSMUSG00000050382 Kif7 ENSMUST00000059836 ENSMUSP00000061806 TRANSLATION protein_coding - CCDS52278.1 1 1347.0 12.0 3.04 0.4 342.9 0.0 -4,-6 1.0 5 14.0 PRINCIPAL:4 ENSMUSG00000025512 Chid1 ENSMUST00000118694 ENSMUSP00000112891 TRANSLATION protein_coding - - 1 307.0 0.0 7.58 0.0 0.0 0.0 3,-2 0.0059 8 1.998 MINOR ENSMUSG00000025512 Chid1 ENSMUST00000155305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025512 Chid1 ENSMUST00000133359 - NO_TRANSLATION retained_intron ENSMUSG00000025512 Chid1 ENSMUST00000143561 ENSMUSP00000115174 TRANSLATION protein_coding stop - 5 263.0 0.0 6.08 0.0 0.0 0.0 3,-2 0.0035 6 -2.0 MINOR ENSMUSG00000025512 Chid1 ENSMUST00000166082 ENSMUSP00000130360 TRANSLATION protein_coding - CCDS52447.1 1 396.0 0.0 9.58 5.0 70.6 0.0 3,-2 1.0 10 13.395 MINOR ENSMUSG00000025512 Chid1 ENSMUST00000064642 ENSMUSP00000065953 TRANSLATION nonsense_mediated_decay start - 5 297.0 0.0 5.49 0.0 0.0 0.0 3,-2 0.0035 5 -2.0 MINOR ENSMUSG00000025512 Chid1 ENSMUST00000147610 - NO_TRANSLATION retained_intron ENSMUSG00000025512 Chid1 ENSMUST00000153191 ENSMUSP00000114693 TRANSLATION protein_coding - - 1 393.0 0.0 9.58 9.6 70.6 0.0 3,-2 0.9759 10 15.0 PRINCIPAL:1 ENSMUSG00000025512 Chid1 ENSMUST00000209452 ENSMUSP00000147938 TRANSLATION nonsense_mediated_decay - - 5 192.0 0.0 3.632 0.0 0.0 0.0 3,-2 0.0019 5 -2.0 MINOR ENSMUSG00000025512 Chid1 ENSMUST00000026586 ENSMUSP00000026586 TRANSLATION protein_coding - CCDS22019.1 1 310.0 0.0 7.58 0.0 0.0 0.0 3,-2 0.0314 8 1.998 MINOR ENSMUSG00000030978 Rrm1 ENSMUST00000211786 - NO_TRANSLATION retained_intron ENSMUSG00000030978 Rrm1 ENSMUST00000211720 ENSMUSP00000147692 TRANSLATION nonsense_mediated_decay - - 3 36.0 0.0 0.33 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000030978 Rrm1 ENSMUST00000033283 ENSMUSP00000033283 TRANSLATION protein_coding - CCDS40049.1 1 792.0 48.0 17.24 31.2 65.6 0.0 -4,-6 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000030978 Rrm1 ENSMUST00000211493 - NO_TRANSLATION retained_intron ENSMUSG00000030978 Rrm1 ENSMUST00000210543 - NO_TRANSLATION retained_intron ENSMUSG00000030978 Rrm1 ENSMUST00000209630 ENSMUSP00000147865 TRANSLATION nonsense_mediated_decay start - 3 65.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030978 Rrm1 ENSMUST00000210751 - NO_TRANSLATION retained_intron ENSMUSG00000046248 Krtap5-3 ENSMUST00000187512 ENSMUSP00000141116 TRANSLATION protein_coding - CCDS80833.1 - 356.0 4.0 0.0 0.0 0.0 0.0 -4,-7 0.8519 - 4.0 PRINCIPAL:1 ENSMUSG00000063903 Klk1 ENSMUST00000075162 ENSMUSP00000074659 TRANSLATION protein_coding - CCDS21202.1 1 261.0 6.0 5.33 7.1 254.6 0.0 4,-1 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000063903 Klk1 ENSMUST00000206144 ENSMUSP00000146057 TRANSLATION protein_coding stop - 3 151.0 4.0 3.0 0.0 164.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000063903 Klk1 ENSMUST00000205329 - NO_TRANSLATION retained_intron ENSMUSG00000030804 Gm21974 ENSMUST00000126662 ENSMUSP00000123566 TRANSLATION nonsense_mediated_decay,RT start - 5 119.0 0.0 2.5 0.0 66.6 0.0 -4,-7 0.736 - -2.0 PRINCIPAL:1 ENSMUSG00000009487 Otog ENSMUST00000209802 ENSMUSP00000147899 TRANSLATION protein_coding - - 1 726.0 0.0 2.1 0.0 59.0 0.0 -4,-7 0.0078 - 0.0 MINOR ENSMUSG00000009487 Otog ENSMUST00000164538 ENSMUSP00000130949 TRANSLATION protein_coding - CCDS52251.1 5 2911.0 0.0 12.9785 0.3 658.9 0.0 3,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000009487 Otog ENSMUST00000210281 - NO_TRANSLATION retained_intron ENSMUSG00000045467 Ttll13 ENSMUST00000205270 ENSMUSP00000145702 TRANSLATION protein_coding start - 1 794.0 6.0 7.85 0.0 294.2 0.0 -4,-6 0.2194 - -2.0 MINOR ENSMUSG00000045467 Ttll13 ENSMUST00000133958 - NO_TRANSLATION retained_intron ENSMUSG00000045467 Ttll13 ENSMUST00000206240 - NO_TRANSLATION retained_intron ENSMUSG00000045467 Ttll13 ENSMUST00000107381 - NO_TRANSLATION retained_intron ENSMUSG00000045467 Ttll13 ENSMUST00000058266 ENSMUSP00000062795 TRANSLATION protein_coding - CCDS39996.1 5 804.0 6.0 7.85 0.0 294.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036459 Wtip ENSMUST00000038537 ENSMUSP00000047623 TRANSLATION protein_coding - CCDS21135.1 1 398.0 24.0 4.66 0.1 127.7 0.0 -2,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000036459 Wtip ENSMUST00000205914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036459 Wtip ENSMUST00000123813 - NO_TRANSLATION retained_intron ENSMUSG00000036459 Wtip ENSMUST00000140911 ENSMUSP00000146103 TRANSLATION nonsense_mediated_decay start - 5 167.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0007 - -2.0 MINOR ENSMUSG00000030873 Scnn1b ENSMUST00000206079 ENSMUSP00000145678 TRANSLATION protein_coding stop - 5 142.0 0.0 1.5 0.0 72.6 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000030873 Scnn1b ENSMUST00000033161 ENSMUSP00000033161 TRANSLATION protein_coding - CCDS21804.1 1 638.0 0.0 8.61 8.8 361.6 2.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000030873 Scnn1b ENSMUST00000205520 ENSMUSP00000145900 TRANSLATION nonsense_mediated_decay - - 1 502.0 0.0 7.95 0.0 287.4 1.0 -4,-7 0.0011 2 -2.0 MINOR ENSMUSG00000048377 Foxi2 ENSMUST00000238917 ENSMUSP00000159111 TRANSLATION protein_coding - CCDS21942.1 - 329.0 0.0 0.8 0.3 130.9 0.0 -4,-5 0.4478 - 8.0 ALTERNATIVE:2 ENSMUSG00000048377 Foxi2 ENSMUST00000060356 ENSMUSP00000053641 TRANSLATION protein_coding - - 1 311.0 0.0 0.8 2.4 130.9 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000034071 Zfp551 ENSMUST00000080348 ENSMUSP00000079222 TRANSLATION protein_coding - CCDS20809.1 1 696.0 55.0 1.0 0.0 367.4 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034071 Zfp551 ENSMUST00000120220 ENSMUSP00000112704 TRANSLATION protein_coding - - 1 56.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000034071 Zfp551 ENSMUST00000123877 ENSMUSP00000148021 TRANSLATION nonsense_mediated_decay start - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000073906 Or52w1 ENSMUST00000098152 ENSMUSP00000095755 TRANSLATION protein_coding - - - 320.0 0.0 1.0 8.4 302.2 9.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073906 Or52w1 ENSMUST00000217827 ENSMUSP00000151295 TRANSLATION protein_coding - CCDS21648.1 - 329.0 0.0 1.0 0.3 302.2 9.0 -4,-7 0.4617 - 12.0 MINOR ENSMUSG00000093877 Or6z1 ENSMUST00000214383 ENSMUSP00000150969 TRANSLATION protein_coding - CCDS85210.1 5 312.0 0.0 4.08 8.3 167.1 14.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093877 Or6z1 ENSMUST00000213549 ENSMUSP00000150128 TRANSLATION protein_coding - CCDS85210.1 5 312.0 0.0 4.08 8.3 167.1 14.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093877 Or6z1 ENSMUST00000207055 ENSMUSP00000146621 TRANSLATION protein_coding stop - 3 90.0 0.0 1.75 0.0 33.3 8.0 -4,-7 0.0037 - -2.0 MINOR ENSMUSG00000093877 Or6z1 ENSMUST00000208066 ENSMUSP00000146558 TRANSLATION protein_coding - CCDS85210.1 - 312.0 0.0 4.08 8.3 167.1 14.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093877 Or6z1 ENSMUST00000208207 ENSMUSP00000146873 TRANSLATION protein_coding stop - 2 99.0 0.0 2.08 0.0 35.8 8.0 -4,-7 0.0037 - -2.0 MINOR ENSMUSG00000093877 Or6z1 ENSMUST00000209097 ENSMUSP00000147205 TRANSLATION protein_coding stop - 2 137.0 0.0 3.08 0.0 76.4 11.0 -4,-7 0.0027 - -2.0 MINOR ENSMUSG00000093877 Or6z1 ENSMUST00000209029 ENSMUSP00000146802 TRANSLATION protein_coding - CCDS85210.1 5 312.0 0.0 4.08 8.3 167.1 14.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093877 Or6z1 ENSMUST00000208623 ENSMUSP00000146811 TRANSLATION protein_coding stop - 5 62.0 0.0 1.0 0.0 0.0 4.0 -4,-2 0.0023 - -2.0 MINOR ENSMUSG00000093877 Or6z1 ENSMUST00000207624 ENSMUSP00000146853 TRANSLATION protein_coding stop - 3 132.0 0.0 3.08 0.0 67.5 11.0 -4,-7 0.0027 - -2.0 MINOR ENSMUSG00000009545 Kcnq1 ENSMUST00000186798 ENSMUSP00000139798 TRANSLATION protein_coding stop - 1 49.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000009545 Kcnq1 ENSMUST00000186288 ENSMUSP00000140779 TRANSLATION protein_coding stop - 1 30.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000009545 Kcnq1 ENSMUST00000009689 ENSMUSP00000009689 TRANSLATION protein_coding - CCDS22039.1 1 668.0 0.0 11.475 1.1 177.7 5.0 -4,-7 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000009545 Kcnq1 ENSMUST00000187213 ENSMUSP00000139700 TRANSLATION protein_coding stop - 1 39.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000009545 Kcnq1 ENSMUST00000186284 ENSMUSP00000140156 TRANSLATION protein_coding stop - 1 77.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000009545 Kcnq1 ENSMUST00000186488 ENSMUSP00000140673 TRANSLATION protein_coding stop - 1 60.0 2.0 0.5 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000009545 Kcnq1 ENSMUST00000185383 ENSMUSP00000139548 TRANSLATION protein_coding - - 1 440.0 0.0 8.75 0.0 91.2 5.0 -4,-2 0.0043 3 1.362 MINOR ENSMUSG00000060791 Gmfg ENSMUST00000078845 ENSMUSP00000077889 TRANSLATION protein_coding - CCDS39860.1 1 142.0 0.0 4.41 36.9 107.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000060791 Gmfg ENSMUST00000135686 ENSMUSP00000119321 TRANSLATION protein_coding stop - 5 86.0 0.0 2.66 0.0 73.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060791 Gmfg ENSMUST00000108289 ENSMUSP00000103924 TRANSLATION protein_coding - CCDS80687.1 3 101.0 0.0 3.08 5.5 87.8 0.0 -4,-5 0.1242 1 8.66 MINOR ENSMUSG00000060791 Gmfg ENSMUST00000108292 ENSMUSP00000103927 TRANSLATION protein_coding - CCDS39859.1 1 142.0 0.0 4.41 36.9 107.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000060791 Gmfg ENSMUST00000138741 - NO_TRANSLATION retained_intron ENSMUSG00000040714 Klc3 ENSMUST00000047170 ENSMUSP00000038091 TRANSLATION protein_coding - CCDS20901.1 1 508.0 0.0 5.15 6.8 135.0 0.0 -4,-6 1.0 17 10.0 PRINCIPAL:3 ENSMUSG00000040714 Klc3 ENSMUST00000108459 ENSMUSP00000104099 TRANSLATION protein_coding - CCDS20901.1 1 508.0 0.0 5.15 6.8 135.0 0.0 -4,-6 1.0 17 10.0 PRINCIPAL:3 ENSMUSG00000040714 Klc3 ENSMUST00000108458 ENSMUSP00000104098 TRANSLATION protein_coding - CCDS20901.1 1 508.0 0.0 5.15 6.8 135.0 0.0 -4,-6 1.0 17 10.0 PRINCIPAL:3 ENSMUSG00000040714 Klc3 ENSMUST00000154419 - NO_TRANSLATION retained_intron ENSMUSG00000040714 Klc3 ENSMUST00000108457 ENSMUSP00000104097 TRANSLATION protein_coding - - 5 505.0 0.0 5.15 6.8 135.0 0.0 -4,-6 0.7958 16 10.0 ALTERNATIVE:1 ENSMUSG00000040714 Klc3 ENSMUST00000125246 - NO_TRANSLATION retained_intron ENSMUSG00000002043 Trappc6a ENSMUST00000129808 - NO_TRANSLATION retained_intron ENSMUSG00000002043 Trappc6a ENSMUST00000207730 - NO_TRANSLATION retained_intron ENSMUSG00000002043 Trappc6a ENSMUST00000135972 ENSMUSP00000120406 TRANSLATION protein_coding start - 5 81.0 0.0 2.66 0.0 30.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000002043 Trappc6a ENSMUST00000108455 ENSMUSP00000104095 TRANSLATION protein_coding - - 1 183.0 0.0 4.58 0.0 108.8 0.0 -4,-7 0.0044 3 11.118 MINOR ENSMUSG00000002043 Trappc6a ENSMUST00000147114 ENSMUSP00000116737 TRANSLATION nonsense_mediated_decay - - 2 36.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000002043 Trappc6a ENSMUST00000136873 ENSMUSP00000119036 TRANSLATION nonsense_mediated_decay - - 2 36.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000002043 Trappc6a ENSMUST00000002112 ENSMUSP00000002112 TRANSLATION protein_coding - CCDS20905.1 1 159.0 0.0 4.91 14.5 112.5 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000043843 Tmem145 ENSMUST00000119703 ENSMUSP00000112676 TRANSLATION protein_coding - - 5 493.0 0.0 10.15 0.0 259.4 11.0 3,-3 0.1447 2 6.998 MINOR ENSMUSG00000043843 Tmem145 ENSMUST00000108409 ENSMUSP00000104046 TRANSLATION protein_coding - CCDS39837.1 2 563.0 0.0 10.65 2.2 259.4 11.0 3,-3 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000043843 Tmem145 ENSMUST00000140016 - NO_TRANSLATION retained_intron ENSMUSG00000043843 Tmem145 ENSMUST00000205639 ENSMUSP00000159059 TRANSLATION protein_coding - - - 604.0 0.0 10.65 0.4 259.4 11.0 3,-3 0.2916 2 8.0 ALTERNATIVE:2 ENSMUSG00000064254 Ethe1 ENSMUST00000077191 ENSMUSP00000076433 TRANSLATION protein_coding - CCDS20957.1 1 254.0 7.0 5.875 6.7 59.5 0.0 -4,0 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000037049 Smpd1 ENSMUST00000046983 ENSMUSP00000042187 TRANSLATION protein_coding - CCDS21653.1 1 627.0 8.0 4.95 8.9 73.6 0.0 -4,-7 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000037049 Smpd1 ENSMUST00000210934 - NO_TRANSLATION retained_intron ENSMUSG00000037049 Smpd1 ENSMUST00000211307 - NO_TRANSLATION retained_intron ENSMUSG00000042606 Hirip3 ENSMUST00000150942 - NO_TRANSLATION retained_intron ENSMUSG00000042606 Hirip3 ENSMUST00000146120 - NO_TRANSLATION retained_intron ENSMUSG00000042606 Hirip3 ENSMUST00000205512 - NO_TRANSLATION retained_intron ENSMUSG00000042606 Hirip3 ENSMUST00000037248 ENSMUSP00000035535 TRANSLATION protein_coding - CCDS21849.1 1 601.0 0.0 2.0 0.0 36.6 0.0 -4,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000042606 Hirip3 ENSMUST00000132808 ENSMUSP00000115145 TRANSLATION protein_coding stop - 2 126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042606 Hirip3 ENSMUST00000129746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042606 Hirip3 ENSMUST00000138793 - NO_TRANSLATION retained_intron ENSMUSG00000115302 Gm49394 ENSMUST00000228850 ENSMUSP00000153765 TRANSLATION protein_coding - - - 346.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5934 - 0.0 PRINCIPAL:1 ENSMUSG00000003184 Irf3 ENSMUST00000107834 ENSMUSP00000103465 TRANSLATION protein_coding - CCDS21224.1 1 419.0 0.0 7.23 2.1 287.2 0.0 -4,-7 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000003184 Irf3 ENSMUST00000208958 ENSMUSP00000146729 TRANSLATION protein_coding start - 3 68.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003184 Irf3 ENSMUST00000207521 ENSMUSP00000146383 TRANSLATION protein_coding stop - 5 160.0 0.0 2.0 0.0 121.5 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000003184 Irf3 ENSMUST00000208906 - NO_TRANSLATION retained_intron ENSMUSG00000003184 Irf3 ENSMUST00000207129 ENSMUSP00000147175 TRANSLATION protein_coding start - 2 103.0 0.0 2.08 0.0 68.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003184 Irf3 ENSMUST00000207476 - NO_TRANSLATION retained_intron ENSMUSG00000003184 Irf3 ENSMUST00000208767 - NO_TRANSLATION retained_intron ENSMUSG00000003184 Irf3 ENSMUST00000208143 - NO_TRANSLATION retained_intron ENSMUSG00000003184 Irf3 ENSMUST00000209006 - NO_TRANSLATION retained_intron ENSMUSG00000003184 Irf3 ENSMUST00000207555 - NO_TRANSLATION retained_intron ENSMUSG00000003184 Irf3 ENSMUST00000207128 ENSMUSP00000147187 TRANSLATION protein_coding start - 5 161.0 0.0 2.73 0.0 53.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000003184 Irf3 ENSMUST00000003284 ENSMUSP00000003284 TRANSLATION protein_coding - CCDS21224.1 1 419.0 0.0 7.23 2.1 287.2 0.0 -4,-7 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000003184 Irf3 ENSMUST00000209066 ENSMUSP00000146773 TRANSLATION protein_coding - CCDS21224.1 1 419.0 0.0 7.23 2.1 287.2 0.0 -4,-7 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000037239 Spred3 ENSMUST00000130390 - NO_TRANSLATION retained_intron ENSMUSG00000037239 Spred3 ENSMUST00000207778 - NO_TRANSLATION retained_intron ENSMUSG00000037239 Spred3 ENSMUST00000208659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037239 Spred3 ENSMUST00000048923 ENSMUSP00000046216 TRANSLATION protein_coding - CCDS21065.1 1 408.0 0.0 1.8 6.9 125.2 0.0 -4,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000063838 Cdc42ep5 ENSMUST00000143825 ENSMUSP00000117257 TRANSLATION protein_coding stop - 2 79.0 0.0 0.5 0.0 29.7 0.0 -4,-2 0.0273 3 -2.0 MINOR ENSMUSG00000063838 Cdc42ep5 ENSMUST00000076831 ENSMUSP00000092508 TRANSLATION protein_coding - CCDS20733.1 1 150.0 0.0 0.5 7.6 67.3 0.0 -4,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000063838 Cdc42ep5 ENSMUST00000140410 ENSMUSP00000122849 TRANSLATION protein_coding stop - 5 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006095 Tbcb ENSMUST00000141608 - NO_TRANSLATION retained_intron ENSMUSG00000006095 Tbcb ENSMUST00000006254 ENSMUSP00000006254 TRANSLATION protein_coding - CCDS21083.1 1 244.0 0.0 5.75 18.6 181.9 0.0 -4,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000006095 Tbcb ENSMUST00000169358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047535 Or52z1 ENSMUST00000183254 ENSMUSP00000138389 TRANSLATION protein_coding - CCDS40059.1 5 320.0 0.0 1.0 8.8 377.4 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070811 Sult2a2 ENSMUST00000086148 ENSMUSP00000083317 TRANSLATION protein_coding - CCDS52030.1 1 194.0 9.0 3.8 2.7 122.3 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000109354 Or2ag2 ENSMUST00000216085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109354 Or2ag2 ENSMUST00000216099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109354 Or2ag2 ENSMUST00000213918 ENSMUSP00000150075 TRANSLATION protein_coding - CCDS21677.1 5 316.0 0.0 1.0 9.9 146.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109354 Or2ag2 ENSMUST00000214495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109354 Or2ag2 ENSMUST00000209025 ENSMUSP00000146412 TRANSLATION protein_coding - CCDS21677.1 - 316.0 0.0 1.0 9.9 146.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049516 Spty2d1 ENSMUST00000061639 ENSMUSP00000059457 TRANSLATION protein_coding - CCDS21293.1 1 682.0 0.0 2.15 0.0 80.8 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000049516 Spty2d1 ENSMUST00000208588 - NO_TRANSLATION retained_intron ENSMUSG00000094085 Vmn1r114 ENSMUST00000098737 ENSMUSP00000096333 TRANSLATION protein_coding - CCDS52082.1 - 321.0 0.0 0.0 0.0 57.7 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030463 4933421I07Rik ENSMUST00000206593 - NO_TRANSLATION retained_intron ENSMUSG00000030463 4933421I07Rik ENSMUST00000032648 ENSMUSP00000032648 TRANSLATION protein_coding - CCDS52217.1 1 214.0 0.0 2.5 0.0 30.6 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058741 Prr19 ENSMUST00000080288 ENSMUSP00000104047 TRANSLATION protein_coding - CCDS52147.1 1 366.0 0.0 0.0 5.3 639.2 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000051877 Vmn2r72 ENSMUST00000233415 ENSMUSP00000156799 TRANSLATION protein_coding - - - 609.0 2.0 1.49 0.0 143.0 0.0 -1,-5 0.0014 - 6.426 MINOR ENSMUSG00000051877 Vmn2r72 ENSMUST00000240708 ENSMUSP00000159501 TRANSLATION protein_coding - - - 851.0 4.0 2.055 0.3 351.8 7.0 -1,-5 0.2579 - 11.556 ALTERNATIVE:2 ENSMUSG00000051877 Vmn2r72 ENSMUST00000233546 ENSMUSP00000156491 TRANSLATION nonsense_mediated_decay - - - 104.0 0.0 0.16 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000051877 Vmn2r72 ENSMUST00000063425 ENSMUSP00000133014 TRANSLATION protein_coding - CCDS52294.1 5 856.0 4.0 2.22 0.0 351.8 7.0 -1,-5 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000025133 Ints4 ENSMUST00000026126 ENSMUSP00000026126 TRANSLATION protein_coding - CCDS21460.1 1 964.0 0.0 18.3 21.5 0.0 0.0 -4,-5 1.0 21 10.0 PRINCIPAL:1 ENSMUSG00000025133 Ints4 ENSMUST00000205876 ENSMUSP00000146158 TRANSLATION nonsense_mediated_decay start - 2 63.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0044 - -2.0 MINOR ENSMUSG00000025133 Ints4 ENSMUST00000205706 - NO_TRANSLATION retained_intron ENSMUSG00000025133 Ints4 ENSMUST00000205481 - NO_TRANSLATION retained_intron ENSMUSG00000025133 Ints4 ENSMUST00000206644 - NO_TRANSLATION retained_intron ENSMUSG00000025133 Ints4 ENSMUST00000205387 - NO_TRANSLATION retained_intron ENSMUSG00000025133 Ints4 ENSMUST00000206843 - NO_TRANSLATION retained_intron ENSMUSG00000032942 Ucp3 ENSMUST00000133850 - NO_TRANSLATION retained_intron ENSMUSG00000032942 Ucp3 ENSMUST00000032958 ENSMUSP00000032958 TRANSLATION protein_coding - CCDS21497.1 1 308.0 0.0 5.6 32.9 216.8 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000032942 Ucp3 ENSMUST00000128044 - NO_TRANSLATION retained_intron ENSMUSG00000032942 Ucp3 ENSMUST00000107059 ENSMUSP00000102674 TRANSLATION protein_coding - CCDS21497.1 5 308.0 0.0 5.6 32.9 216.8 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000030766 Arhgap17 ENSMUST00000098060 ENSMUSP00000095668 TRANSLATION protein_coding - CCDS85404.1 1 768.0 0.0 5.998 0.0 366.2 0.0 -4,-7 0.4021 15 8.0 ALTERNATIVE:2 ENSMUSG00000030766 Arhgap17 ENSMUST00000205785 - NO_TRANSLATION retained_intron ENSMUSG00000030766 Arhgap17 ENSMUST00000167309 ENSMUSP00000128447 TRANSLATION protein_coding - CCDS52390.1 1 818.0 0.0 5.998 0.0 366.2 0.0 -4,-7 0.4212 17 8.0 ALTERNATIVE:2 ENSMUSG00000030766 Arhgap17 ENSMUST00000207010 ENSMUSP00000145628 TRANSLATION protein_coding - CCDS85405.1 1 740.0 0.0 5.998 0.0 366.2 0.0 -4,-7 0.5097 14 8.0 ALTERNATIVE:2 ENSMUSG00000030766 Arhgap17 ENSMUST00000106442 ENSMUSP00000102050 TRANSLATION protein_coding - CCDS52389.1 1 846.0 0.0 5.998 0.0 366.2 0.0 -4,-7 0.4532 18 8.0 ALTERNATIVE:2 ENSMUSG00000030766 Arhgap17 ENSMUST00000205262 ENSMUSP00000146035 TRANSLATION protein_coding - CCDS52388.1 1 727.0 0.0 5.998 0.0 366.2 0.0 -4,-7 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000030766 Arhgap17 ENSMUST00000205936 ENSMUSP00000146019 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000030766 Arhgap17 ENSMUST00000206117 ENSMUSP00000145627 TRANSLATION nonsense_mediated_decay - - 1 230.0 0.0 1.348 0.0 198.4 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000030766 Arhgap17 ENSMUST00000206294 - NO_TRANSLATION retained_intron ENSMUSG00000030766 Arhgap17 ENSMUST00000205805 - NO_TRANSLATION retained_intron ENSMUSG00000030766 Arhgap17 ENSMUST00000206803 - NO_TRANSLATION retained_intron ENSMUSG00000091926 Vmn2r62 ENSMUST00000169130 ENSMUSP00000130557 TRANSLATION protein_coding - CCDS52219.1 5 859.0 3.0 2.76 0.3 403.2 0.0 2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070426 Rnf121 ENSMUST00000131104 ENSMUSP00000123134 TRANSLATION protein_coding start/stop - 5 170.0 0.0 0.0 0.0 0.0 9.0 -4,-5 0.0239 - -2.0 MINOR ENSMUSG00000070426 Rnf121 ENSMUST00000156119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070426 Rnf121 ENSMUST00000106953 ENSMUSP00000102566 TRANSLATION protein_coding - - 1 310.0 8.0 0.7 0.0 0.0 11.0 -4,-7 0.0883 - 12.0 MINOR ENSMUSG00000070426 Rnf121 ENSMUST00000149976 - NO_TRANSLATION retained_intron ENSMUSG00000070426 Rnf121 ENSMUST00000130074 ENSMUSP00000120705 TRANSLATION protein_coding stop - 3 57.0 0.0 0.0 0.0 0.0 3.0 -4,-7 0.0236 - -2.0 MINOR ENSMUSG00000070426 Rnf121 ENSMUST00000089052 ENSMUSP00000086453 TRANSLATION protein_coding - - 1 304.0 8.0 0.7 7.4 0.0 11.0 -4,-7 0.3173 - 12.924 MINOR ENSMUSG00000070426 Rnf121 ENSMUST00000096639 ENSMUSP00000094396 TRANSLATION protein_coding - CCDS21523.1 1 327.0 8.0 0.7 28.7 0.0 11.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047721 Bola2 ENSMUST00000052145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047721 Bola2 ENSMUST00000130498 ENSMUSP00000114873 TRANSLATION protein_coding - CCDS40129.1 1 86.0 0.0 2.75 21.2 71.9 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000047721 Bola2 ENSMUST00000144571 - NO_TRANSLATION retained_intron ENSMUSG00000047721 Bola2 ENSMUST00000206275 - NO_TRANSLATION retained_intron ENSMUSG00000047721 Bola2 ENSMUST00000106369 ENSMUSP00000101977 TRANSLATION protein_coding - - 1 54.0 0.0 1.75 0.0 35.9 0.0 -4,-5 0.0 2 6.81 MINOR ENSMUSG00000030557 Mef2a ENSMUST00000208823 - NO_TRANSLATION retained_intron ENSMUSG00000030557 Mef2a ENSMUST00000107476 ENSMUSP00000103100 TRANSLATION protein_coding - CCDS71980.1 1 490.0 0.0 1.9 15.8 28.3 0.0 -4,-6 0.846 3 11.83 MINOR ENSMUSG00000030557 Mef2a ENSMUST00000156690 ENSMUSP00000117496 TRANSLATION protein_coding - CCDS39981.1 1 498.0 0.0 1.9 17.7 28.3 0.0 -4,-6 0.8511 3 12.286 MINOR ENSMUSG00000030557 Mef2a ENSMUST00000072460 ENSMUSP00000138645 TRANSLATION nonsense_mediated_decay - - 1 100.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030557 Mef2a ENSMUST00000144057 - NO_TRANSLATION retained_intron ENSMUSG00000030557 Mef2a ENSMUST00000207715 ENSMUSP00000146872 TRANSLATION protein_coding start/stop - 5 210.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 - -2.0 MINOR ENSMUSG00000030557 Mef2a ENSMUST00000076325 ENSMUSP00000075664 TRANSLATION protein_coding - CCDS71979.1 1 492.0 0.0 1.7 15.8 74.3 0.0 -4,-6 1.0 3 14.914 PRINCIPAL:1 ENSMUSG00000030557 Mef2a ENSMUST00000207794 - NO_TRANSLATION retained_intron ENSMUSG00000030557 Mef2a ENSMUST00000207486 - NO_TRANSLATION retained_intron ENSMUSG00000030557 Mef2a ENSMUST00000135493 ENSMUSP00000138566 TRANSLATION nonsense_mediated_decay - CCDS39981.1 1 498.0 0.0 1.9 17.7 28.3 0.0 -4,-6 0.8511 - -2.0 MINOR ENSMUSG00000030557 Mef2a ENSMUST00000133074 ENSMUSP00000116144 TRANSLATION protein_coding stop - 1 235.0 0.0 1.9 0.0 28.3 0.0 -4,-6 0.0169 - -2.0 MINOR ENSMUSG00000030557 Mef2a ENSMUST00000032776 ENSMUSP00000032776 TRANSLATION protein_coding - CCDS71979.1 1 492.0 0.0 1.7 15.8 74.3 0.0 -4,-6 1.0 3 14.914 PRINCIPAL:1 ENSMUSG00000045757 Zfp764 ENSMUST00000139118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045757 Zfp764 ENSMUST00000059199 ENSMUSP00000052944 TRANSLATION protein_coding - CCDS21865.1 1 431.0 36.0 1.0 0.0 284.8 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000059108 Ifitm6 ENSMUST00000211330 ENSMUSP00000147821 TRANSLATION protein_coding - - 2 124.0 0.0 0.8 0.0 101.6 3.0 -3,-6 0.0891 1 8.0 ALTERNATIVE:2 ENSMUSG00000059108 Ifitm6 ENSMUST00000081924 ENSMUSP00000080594 TRANSLATION protein_coding - CCDS21997.1 1 104.0 0.0 0.8 0.0 101.6 3.0 -4,-6 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000059108 Ifitm6 ENSMUST00000209328 ENSMUSP00000147357 TRANSLATION protein_coding - CCDS21997.1 5 104.0 0.0 0.8 0.0 101.6 3.0 -4,-6 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000073956 Or52j3 ENSMUST00000098207 ENSMUSP00000095808 TRANSLATION protein_coding - CCDS21564.1 - 312.0 0.0 1.0 11.8 369.9 8.0 -4,-7 1.0 - 14.148 PRINCIPAL:1 ENSMUSG00000073956 Or52j3 ENSMUST00000106893 ENSMUSP00000102506 TRANSLATION protein_coding - CCDS21564.1 5 312.0 0.0 1.0 11.8 369.9 8.0 -4,-7 1.0 - 14.148 PRINCIPAL:1 ENSMUSG00000073956 Or52j3 ENSMUST00000218618 ENSMUSP00000153755 TRANSLATION protein_coding - - 5 323.0 0.0 1.165 0.0 369.9 8.0 -4,-7 0.1092 - 12.0 MINOR ENSMUSG00000055320 Tead1 ENSMUST00000239404 ENSMUSP00000159345 TRANSLATION protein_coding - CCDS52366.1 - 415.0 0.0 8.25 19.1 0.0 0.0 -4,-5 0.9919 2 8.5 ALTERNATIVE:1 ENSMUSG00000055320 Tead1 ENSMUST00000172065 - NO_TRANSLATION retained_intron ENSMUSG00000055320 Tead1 ENSMUST00000239442 ENSMUSP00000159359 TRANSLATION protein_coding - CCDS52365.1 - 436.0 0.0 9.0 0.0 0.0 0.0 -4,-5 0.1426 2 6.0 MINOR ENSMUSG00000055320 Tead1 ENSMUST00000163593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055320 Tead1 ENSMUST00000210510 - NO_TRANSLATION retained_intron ENSMUSG00000055320 Tead1 ENSMUST00000165036 ENSMUSP00000131221 TRANSLATION protein_coding - - 5 415.0 0.0 8.25 17.1 0.0 0.0 -4,-5 0.8484 2 8.06 ALTERNATIVE:1 ENSMUSG00000055320 Tead1 ENSMUST00000171197 ENSMUSP00000128439 TRANSLATION protein_coding - - 5 357.0 0.0 7.25 0.0 0.0 0.0 -4,-5 0.0134 1 2.502 MINOR ENSMUSG00000055320 Tead1 ENSMUST00000168328 - NO_TRANSLATION retained_intron ENSMUSG00000055320 Tead1 ENSMUST00000069256 ENSMUSP00000130459 TRANSLATION protein_coding - CCDS52367.1 1 411.0 0.0 8.25 19.1 0.0 0.0 -4,-5 1.0 2 8.5 PRINCIPAL:4 ENSMUSG00000055320 Tead1 ENSMUST00000106638 ENSMUSP00000102249 TRANSLATION protein_coding - - 1 430.0 0.0 8.25 6.2 0.0 0.0 -4,-7 0.2957 2 5.648 MINOR ENSMUSG00000055320 Tead1 ENSMUST00000168981 ENSMUSP00000133025 TRANSLATION protein_coding - - 5 394.0 0.0 7.5 4.4 0.0 0.0 -4,-5 0.1824 2 3.752 MINOR ENSMUSG00000055320 Tead1 ENSMUST00000170352 ENSMUSP00000129798 TRANSLATION protein_coding - - 5 405.0 0.0 7.5 0.0 0.0 0.0 -4,-7 0.0798 2 3.0 MINOR ENSMUSG00000055320 Tead1 ENSMUST00000059768 ENSMUSP00000060671 TRANSLATION protein_coding start - 1 451.0 0.0 9.0 5.2 0.0 0.0 -4,-5 0.2922 2 -2.0 MINOR ENSMUSG00000055320 Tead1 ENSMUST00000171373 ENSMUSP00000131765 TRANSLATION protein_coding stop - 2 30.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.016 - -2.0 MINOR ENSMUSG00000055320 Tead1 ENSMUST00000167060 ENSMUSP00000130564 TRANSLATION protein_coding start/stop - 5 186.0 0.0 3.75 0.0 0.0 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000055320 Tead1 ENSMUST00000084705 ENSMUSP00000081755 TRANSLATION protein_coding start - 1 426.0 0.0 8.25 6.2 0.0 0.0 -4,-5 0.3066 2 -2.0 MINOR ENSMUSG00000055320 Tead1 ENSMUST00000164363 ENSMUSP00000127574 TRANSLATION protein_coding - - 5 451.0 0.0 9.0 5.2 0.0 0.0 -4,-7 0.3002 2 6.928 MINOR ENSMUSG00000096180 Vmn2r49 ENSMUST00000108550 ENSMUSP00000104190 TRANSLATION protein_coding - CCDS39765.1 1 852.0 4.0 2.2 0.1 387.1 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000062524 Ncr1 ENSMUST00000126417 ENSMUSP00000145847 TRANSLATION protein_coding - - 1 288.0 0.0 2.2 0.0 59.9 1.0 -4,-5 0.0077 - 10.362 MINOR ENSMUSG00000062524 Ncr1 ENSMUST00000006792 ENSMUSP00000006792 TRANSLATION protein_coding - CCDS20734.1 1 325.0 0.0 2.7 0.1 65.7 1.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074322 Vmn1r132 ENSMUST00000098736 ENSMUSP00000096332 TRANSLATION protein_coding - CCDS52100.1 - 297.0 0.0 0.0 0.0 26.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000001247 Lsr ENSMUST00000001279 ENSMUSP00000001279 TRANSLATION protein_coding - CCDS21119.1 1 594.0 0.0 1.3 0.0 83.2 2.0 0,-4 0.3163 13 10.332 MINOR ENSMUSG00000001247 Lsr ENSMUST00000147431 ENSMUSP00000123487 TRANSLATION protein_coding stop - 5 277.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0019 10 -2.0 MINOR ENSMUSG00000001247 Lsr ENSMUST00000098553 ENSMUSP00000096153 TRANSLATION protein_coding - CCDS52185.1 1 526.0 0.0 1.2 0.0 0.0 0.0 0,-4 0.0519 11 4.002 MINOR ENSMUSG00000001247 Lsr ENSMUST00000108116 ENSMUSP00000103751 TRANSLATION protein_coding - CCDS52186.1 1 575.0 0.0 1.8 1.0 83.2 2.0 0,-4 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000001247 Lsr ENSMUST00000205961 ENSMUSP00000146120 TRANSLATION protein_coding - CCDS21119.1 1 594.0 0.0 1.3 0.0 83.2 2.0 0,-4 0.3163 13 10.332 MINOR ENSMUSG00000095929 Or5p63 ENSMUST00000081996 ENSMUSP00000080657 TRANSLATION protein_coding - CCDS21708.1 - 314.0 0.0 1.0 10.4 168.6 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095929 Or5p63 ENSMUST00000216489 ENSMUSP00000149407 TRANSLATION protein_coding - CCDS21708.1 5 314.0 0.0 1.0 10.4 168.6 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095383 Vmn1r152 ENSMUST00000168326 ENSMUSP00000128566 TRANSLATION protein_coding - CCDS52116.1 - 307.0 0.0 0.0 0.4 55.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094589 Vmn1r118 ENSMUST00000172322 ENSMUSP00000125956 TRANSLATION protein_coding - CCDS52086.1 - 306.0 0.0 0.0 0.4 58.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045777 Ifitm10 ENSMUST00000123543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045777 Ifitm10 ENSMUST00000084412 ENSMUSP00000081450 TRANSLATION protein_coding - CCDS85467.1 1 130.0 0.0 0.0 2.4 72.2 3.0 -4,-7 1.0 - 3.0 PRINCIPAL:2 ENSMUSG00000045777 Ifitm10 ENSMUST00000059223 ENSMUSP00000062728 TRANSLATION protein_coding - CCDS40191.1 1 162.0 0.0 0.0 0.0 30.8 2.0 -4,-7 0.039 - 0.0 MINOR ENSMUSG00000045777 Ifitm10 ENSMUST00000105988 ENSMUSP00000101608 TRANSLATION protein_coding - CCDS85468.1 2 201.0 0.0 0.0 0.7 72.2 3.0 -4,-6 0.2384 - 2.0 ALTERNATIVE:2 ENSMUSG00000045777 Ifitm10 ENSMUST00000131791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045777 Ifitm10 ENSMUST00000140032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051113 Garin5a ENSMUST00000206195 - NO_TRANSLATION retained_intron ENSMUSG00000051113 Garin5a ENSMUST00000205359 ENSMUSP00000145700 TRANSLATION protein_coding - - 2 272.0 0.0 3.0 0.0 61.1 0.0 -4,-7 0.0371 1 8.0 ALTERNATIVE:2 ENSMUSG00000051113 Garin5a ENSMUST00000206033 - NO_TRANSLATION retained_intron ENSMUSG00000051113 Garin5a ENSMUST00000205819 - NO_TRANSLATION retained_intron ENSMUSG00000051113 Garin5a ENSMUST00000205397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051113 Garin5a ENSMUST00000206398 ENSMUSP00000145737 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 1.132 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000051113 Garin5a ENSMUST00000107927 ENSMUSP00000103560 TRANSLATION protein_coding - CCDS52232.1 1 212.0 0.0 3.0 0.8 61.7 0.0 -4,-7 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000051113 Garin5a ENSMUST00000206965 - NO_TRANSLATION retained_intron ENSMUSG00000051113 Garin5a ENSMUST00000205422 ENSMUSP00000146329 TRANSLATION protein_coding - - 1 63.0 0.0 1.132 0.0 0.0 0.0 -4,-7 0.0 - 2.262 MINOR ENSMUSG00000002266 Zim1 ENSMUST00000122432 ENSMUSP00000113585 TRANSLATION protein_coding - CCDS20782.1 1 579.0 44.0 0.6 0.1 307.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000002266 Zim1 ENSMUST00000203908 ENSMUSP00000145453 TRANSLATION protein_coding - CCDS20782.1 5 579.0 44.0 0.6 0.1 307.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000002266 Zim1 ENSMUST00000002336 ENSMUSP00000002336 TRANSLATION protein_coding - CCDS20782.1 1 579.0 44.0 0.6 0.1 307.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000002266 Zim1 ENSMUST00000213399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030546 Plin1 ENSMUST00000205915 ENSMUSP00000146028 TRANSLATION protein_coding - CCDS21385.1 1 517.0 0.0 0.0 0.4 382.7 0.0 -4,-5 1.0 33 6.0 PRINCIPAL:1 ENSMUSG00000030546 Plin1 ENSMUST00000032762 ENSMUSP00000032762 TRANSLATION protein_coding - CCDS21385.1 5 517.0 0.0 0.0 0.4 382.7 0.0 -4,-5 1.0 33 6.0 PRINCIPAL:1 ENSMUSG00000030546 Plin1 ENSMUST00000206083 ENSMUSP00000146003 TRANSLATION protein_coding start - 1 190.0 0.0 0.0 0.0 191.3 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000030546 Plin1 ENSMUST00000178257 ENSMUSP00000136996 TRANSLATION protein_coding - CCDS21385.1 1 517.0 0.0 0.0 0.4 382.7 0.0 -4,-5 1.0 33 6.0 PRINCIPAL:1 ENSMUSG00000030546 Plin1 ENSMUST00000205413 ENSMUSP00000145747 TRANSLATION protein_coding - - 1 87.0 0.0 0.0 0.0 111.4 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000030546 Plin1 ENSMUST00000205553 ENSMUSP00000145653 TRANSLATION protein_coding start - 3 111.0 0.0 0.0 0.0 33.8 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000030546 Plin1 ENSMUST00000205747 ENSMUSP00000146198 TRANSLATION protein_coding stop - 2 161.0 0.0 0.0 0.0 223.9 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000030451 Herc2 ENSMUST00000205303 ENSMUSP00000145997 TRANSLATION protein_coding - - 5 4800.0 8.0 26.8364 0.4 1247.9 0.0 -4,-5 0.3752 60 18.0 MINOR ENSMUSG00000030451 Herc2 ENSMUST00000206537 ENSMUSP00000146182 TRANSLATION protein_coding stop - 1 965.0 0.0 5.7 0.0 211.3 0.0 -4,-5 0.0022 13 -2.0 MINOR ENSMUSG00000030451 Herc2 ENSMUST00000205653 ENSMUSP00000145771 TRANSLATION protein_coding stop - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0209 1 -2.0 MINOR ENSMUSG00000030451 Herc2 ENSMUST00000205678 ENSMUSP00000145560 TRANSLATION protein_coding start/stop - 1 167.0 0.0 0.6875 0.0 40.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000030451 Herc2 ENSMUST00000076226 ENSMUSP00000075579 TRANSLATION protein_coding - CCDS21318.1 1 4836.0 8.0 26.8364 9.6 1247.9 0.0 -4,-5 1.0 60 21.0 PRINCIPAL:1 ENSMUSG00000030451 Herc2 ENSMUST00000206101 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030451 Herc2 ENSMUST00000206990 - NO_TRANSLATION retained_intron ENSMUSG00000030451 Herc2 ENSMUST00000164095 ENSMUSP00000131573 TRANSLATION protein_coding - CCDS21318.1 1 4836.0 8.0 26.8364 9.6 1247.9 0.0 -4,-5 1.0 60 21.0 PRINCIPAL:1 ENSMUSG00000109350 Apoc2l ENSMUST00000150569 ENSMUSP00000114512 TRANSLATION protein_coding,RT - CCDS39801.1 2 97.0 0.0 1.75 7.1 132.6 0.0 4,-1 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000109350 Apoc2l ENSMUST00000127648 ENSMUSP00000118305 TRANSLATION protein_coding,RT - CCDS39801.1 5 97.0 0.0 1.75 7.1 132.6 0.0 4,-1 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000108367 Erfl ENSMUST00000206705 ENSMUSP00000146932 TRANSLATION protein_coding - - 5 352.0 0.0 2.175 4.6 113.7 0.0 -3,-5 0.8823 - 14.0 PRINCIPAL:1 ENSMUSG00000063582 Or52n2 ENSMUST00000081116 ENSMUSP00000079893 TRANSLATION protein_coding - CCDS21631.1 - 318.0 0.0 1.0 10.9 346.9 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063582 Or52n2 ENSMUST00000214757 ENSMUSP00000148919 TRANSLATION protein_coding - CCDS21631.1 5 318.0 0.0 1.0 10.9 346.9 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030551 Nr2f2 ENSMUST00000208681 - NO_TRANSLATION retained_intron ENSMUSG00000030551 Nr2f2 ENSMUST00000208474 - NO_TRANSLATION retained_intron ENSMUSG00000030551 Nr2f2 ENSMUST00000089565 ENSMUSP00000086993 TRANSLATION protein_coding - CCDS21358.1 1 281.0 0.0 1.5 22.1 136.3 0.0 -4,-5 0.6776 2 7.912 MINOR ENSMUSG00000030551 Nr2f2 ENSMUST00000208081 ENSMUSP00000147190 TRANSLATION protein_coding stop - 2 170.0 0.0 0.5 0.0 80.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000030551 Nr2f2 ENSMUST00000207153 - NO_TRANSLATION retained_intron ENSMUSG00000030551 Nr2f2 ENSMUST00000032768 ENSMUSP00000032768 TRANSLATION protein_coding - CCDS21359.1 1 414.0 8.0 2.3 18.7 244.1 0.0 -4,-5 1.0 3 21.356 PRINCIPAL:1 ENSMUSG00000109392 Gm5737 ENSMUST00000208668 ENSMUSP00000146629 TRANSLATION protein_coding - - 5 423.0 28.0 9.15 1.0 215.8 0.0 -4,-5 0.7863 - 18.0 PRINCIPAL:1 ENSMUSG00000070817 Vmn1r85 ENSMUST00000209822 ENSMUSP00000148178 TRANSLATION protein_coding - CCDS20827.1 2 308.0 0.0 0.0 0.0 119.6 5.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070817 Vmn1r85 ENSMUST00000094829 ENSMUSP00000092424 TRANSLATION protein_coding - CCDS20827.1 - 308.0 0.0 0.0 0.0 119.6 5.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070817 Vmn1r85 ENSMUST00000235753 ENSMUSP00000157899 TRANSLATION protein_coding - CCDS20827.1 - 308.0 0.0 0.0 0.0 119.6 5.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046396 Or51af1 ENSMUST00000216360 ENSMUSP00000149804 TRANSLATION protein_coding - CCDS21576.1 5 319.0 0.0 1.0 4.8 395.2 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000046396 Or51af1 ENSMUST00000216075 ENSMUSP00000149003 TRANSLATION protein_coding - CCDS21576.1 5 319.0 0.0 1.0 4.8 395.2 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000046396 Or51af1 ENSMUST00000055787 ENSMUSP00000051749 TRANSLATION protein_coding - CCDS21576.1 - 319.0 0.0 1.0 4.8 395.2 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030996 Art1 ENSMUST00000033300 ENSMUSP00000033300 TRANSLATION protein_coding - CCDS21526.1 1 325.0 16.0 1.18 0.0 322.1 1.0 0,-3 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000030996 Art1 ENSMUST00000210211 ENSMUSP00000148204 TRANSLATION nonsense_mediated_decay - - 1 101.0 0.0 0.68 0.0 0.0 1.0 0,-3 0.0025 1 -2.0 MINOR ENSMUSG00000030996 Art1 ENSMUST00000209809 ENSMUSP00000147911 TRANSLATION nonsense_mediated_decay - CCDS21526.1 1 325.0 16.0 1.18 0.0 322.1 1.0 0,-3 1.0 - -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000166538 ENSMUSP00000127323 TRANSLATION nonsense_mediated_decay start - 5 65.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000164741 ENSMUSP00000132205 TRANSLATION protein_coding start/stop - 5 255.0 0.0 0.32 0.0 40.5 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000167315 - NO_TRANSLATION retained_intron ENSMUSG00000000131 Xpo6 ENSMUST00000168189 ENSMUSP00000130527 TRANSLATION protein_coding - CCDS80800.1 1 1125.0 0.0 1.045 19.6 113.3 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:5 ENSMUSG00000000131 Xpo6 ENSMUST00000166540 ENSMUSP00000129658 TRANSLATION nonsense_mediated_decay start - 5 142.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000167147 ENSMUSP00000132462 TRANSLATION nonsense_mediated_decay - - 5 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000168649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000131 Xpo6 ENSMUST00000165660 ENSMUSP00000132958 TRANSLATION protein_coding start/stop - 5 135.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000169059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000131 Xpo6 ENSMUST00000163959 ENSMUSP00000128058 TRANSLATION protein_coding stop - 3 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000167268 - NO_TRANSLATION retained_intron ENSMUSG00000000131 Xpo6 ENSMUST00000170675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000131 Xpo6 ENSMUST00000168564 ENSMUSP00000129881 TRANSLATION nonsense_mediated_decay start - 3 132.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000168933 - NO_TRANSLATION retained_intron ENSMUSG00000000131 Xpo6 ENSMUST00000171861 ENSMUSP00000126904 TRANSLATION nonsense_mediated_decay start - 5 71.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000166719 ENSMUSP00000131299 TRANSLATION nonsense_mediated_decay start - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000165608 ENSMUSP00000128919 TRANSLATION nonsense_mediated_decay start - 5 87.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000000131 Xpo6 ENSMUST00000206784 - NO_TRANSLATION retained_intron ENSMUSG00000000131 Xpo6 ENSMUST00000166368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000131 Xpo6 ENSMUST00000009344 ENSMUSP00000009344 TRANSLATION protein_coding - CCDS52396.1 1 1124.0 0.0 1.045 19.6 113.3 0.0 -4,-5 1.0 17 12.0 ALTERNATIVE:1 ENSMUSG00000030982 Vps35l ENSMUST00000175952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030982 Vps35l ENSMUST00000059390 ENSMUSP00000051263 TRANSLATION protein_coding - - 1 963.0 0.0 0.0 25.0 0.0 0.0 -4,-7 1.0 25 4.0 PRINCIPAL:1 ENSMUSG00000030982 Vps35l ENSMUST00000176197 - NO_TRANSLATION retained_intron ENSMUSG00000030982 Vps35l ENSMUST00000175922 ENSMUSP00000134956 TRANSLATION protein_coding - - 1 241.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 7 0.0 MINOR ENSMUSG00000030982 Vps35l ENSMUST00000175730 - NO_TRANSLATION retained_intron ENSMUSG00000030982 Vps35l ENSMUST00000149749 ENSMUSP00000121323 TRANSLATION protein_coding start/stop - 5 203.0 0.0 0.0 0.0 23.6 0.0 -4,-6 0.0298 6 -2.0 MINOR ENSMUSG00000030982 Vps35l ENSMUST00000131162 - NO_TRANSLATION retained_intron ENSMUSG00000030982 Vps35l ENSMUST00000146350 - NO_TRANSLATION retained_intron ENSMUSG00000030982 Vps35l ENSMUST00000033280 ENSMUSP00000033280 TRANSLATION protein_coding - - 1 728.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.027 18 0.0 MINOR ENSMUSG00000030982 Vps35l ENSMUST00000106552 ENSMUSP00000102162 TRANSLATION protein_coding - - 5 870.0 0.0 0.0 1.0 0.0 0.0 -4,-7 0.0476 25 0.0 MINOR ENSMUSG00000030982 Vps35l ENSMUST00000129334 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030982 Vps35l ENSMUST00000148586 - NO_TRANSLATION retained_intron ENSMUSG00000030982 Vps35l ENSMUST00000208483 - NO_TRANSLATION retained_intron ENSMUSG00000030982 Vps35l ENSMUST00000209103 - NO_TRANSLATION retained_intron ENSMUSG00000030982 Vps35l ENSMUST00000106553 ENSMUSP00000102163 TRANSLATION protein_coding - - 5 936.0 0.0 0.0 0.1 0.0 0.0 -4,-7 0.0482 23 0.0 MINOR ENSMUSG00000030982 Vps35l ENSMUST00000136623 - NO_TRANSLATION retained_intron ENSMUSG00000090411 Vmn1r174 ENSMUST00000167551 ENSMUSP00000126478 TRANSLATION protein_coding - CCDS20933.1 - 313.0 0.0 0.0 0.0 62.8 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000090411 Vmn1r174 ENSMUST00000228331 ENSMUSP00000154506 TRANSLATION protein_coding - CCDS20933.1 - 313.0 0.0 0.0 0.0 62.8 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000073937 Or51k2 ENSMUST00000216006 ENSMUSP00000149105 TRANSLATION protein_coding - CCDS21599.1 5 312.0 0.0 1.0 13.4 400.5 7.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073937 Or51k2 ENSMUST00000098188 ENSMUSP00000095790 TRANSLATION protein_coding - CCDS21599.1 - 312.0 0.0 1.0 13.4 400.5 7.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000087598 Zfp111 ENSMUST00000073833 ENSMUSP00000083174 TRANSLATION protein_coding - CCDS20944.2 5 700.0 63.0 1.0 0.0 364.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000087598 Zfp111 ENSMUST00000086006 ENSMUSP00000083169 TRANSLATION protein_coding - CCDS20944.2 1 700.0 63.0 1.0 0.0 364.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000087598 Zfp111 ENSMUST00000056683 ENSMUSP00000129484 TRANSLATION protein_coding - CCDS80674.1 1 701.0 63.0 1.0 0.0 364.0 0.0 -4,-5 0.9365 - 14.0 ALTERNATIVE:2 ENSMUSG00000087598 Zfp111 ENSMUST00000142218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087598 Zfp111 ENSMUST00000148050 - NO_TRANSLATION retained_intron ENSMUSG00000087598 Zfp111 ENSMUST00000160563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073954 Or52e3 ENSMUST00000214051 ENSMUSP00000149847 TRANSLATION protein_coding - CCDS21566.1 5 311.0 0.0 1.0 10.5 432.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073954 Or52e3 ENSMUST00000098205 ENSMUSP00000095806 TRANSLATION protein_coding - CCDS21566.1 - 311.0 0.0 1.0 10.5 432.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070417 Or6a2 ENSMUST00000211432 ENSMUSP00000147893 TRANSLATION nonsense_mediated_decay - CCDS21683.1 5 327.0 0.0 0.8 8.8 177.9 7.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000070417 Or6a2 ENSMUST00000094109 ENSMUSP00000091656 TRANSLATION protein_coding - CCDS21683.1 1 327.0 0.0 0.8 8.8 177.9 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070417 Or6a2 ENSMUST00000216375 ENSMUSP00000150093 TRANSLATION protein_coding - CCDS21683.1 3 327.0 0.0 0.8 8.8 177.9 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070417 Or6a2 ENSMUST00000214105 ENSMUSP00000149104 TRANSLATION protein_coding - CCDS21683.1 5 327.0 0.0 0.8 8.8 177.9 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070417 Or6a2 ENSMUST00000217764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070417 Or6a2 ENSMUST00000208147 ENSMUSP00000147026 TRANSLATION protein_coding - CCDS21683.1 5 327.0 0.0 0.8 8.8 177.9 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070417 Or6a2 ENSMUST00000207280 ENSMUSP00000146957 TRANSLATION nonsense_mediated_decay - CCDS21683.1 5 327.0 0.0 0.8 8.8 177.9 7.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000110061 Gm45337 ENSMUST00000210537 ENSMUSP00000147817 TRANSLATION protein_coding - - - 263.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5953 - 0.0 PRINCIPAL:1 ENSMUSG00000051811 Cox6b2 ENSMUST00000182048 ENSMUSP00000138765 TRANSLATION protein_coding - CCDS39738.1 1 88.0 0.0 2.33 10.6 65.5 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000051811 Cox6b2 ENSMUST00000063324 ENSMUSP00000064988 TRANSLATION protein_coding - CCDS39738.1 1 88.0 0.0 2.33 10.6 65.5 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000051811 Cox6b2 ENSMUST00000183971 ENSMUSP00000138911 TRANSLATION protein_coding - - 5 78.0 0.0 2.0 0.1 30.1 0.0 -4,-6 0.0005 2 7.908 MINOR ENSMUSG00000051811 Cox6b2 ENSMUST00000182111 ENSMUSP00000138709 TRANSLATION protein_coding - CCDS39738.1 1 88.0 0.0 2.33 10.6 65.5 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000051811 Cox6b2 ENSMUST00000182272 - NO_TRANSLATION retained_intron ENSMUSG00000051811 Cox6b2 ENSMUST00000184143 ENSMUSP00000139239 TRANSLATION protein_coding - CCDS80658.1 2 60.0 0.0 1.5 0.0 33.3 0.0 -4,-6 0.0099 1 6.912 MINOR ENSMUSG00000051811 Cox6b2 ENSMUST00000182738 ENSMUSP00000138744 TRANSLATION protein_coding - CCDS80657.1 2 88.0 0.0 1.85 0.0 31.6 0.0 -4,-6 0.2255 1 7.656 MINOR ENSMUSG00000051811 Cox6b2 ENSMUST00000182173 ENSMUSP00000138288 TRANSLATION protein_coding - - 2 104.0 0.0 1.83 0.0 54.1 0.0 -4,-7 0.0003 1 9.666 MINOR ENSMUSG00000051811 Cox6b2 ENSMUST00000183334 ENSMUSP00000138708 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0003 - -2.0 MINOR ENSMUSG00000096348 Vmn1r250 ENSMUST00000098722 ENSMUSP00000096318 TRANSLATION protein_coding - CCDS52108.1 - 321.0 0.0 0.0 0.0 58.9 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038520 Tbc1d17 ENSMUST00000142098 - NO_TRANSLATION retained_intron ENSMUSG00000038520 Tbc1d17 ENSMUST00000208714 ENSMUSP00000147046 TRANSLATION nonsense_mediated_decay start - 5 47.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038520 Tbc1d17 ENSMUST00000133846 - NO_TRANSLATION retained_intron ENSMUSG00000038520 Tbc1d17 ENSMUST00000130081 - NO_TRANSLATION retained_intron ENSMUSG00000038520 Tbc1d17 ENSMUST00000047085 ENSMUSP00000048260 TRANSLATION protein_coding - CCDS39944.1 1 645.0 0.0 9.3 3.4 539.1 0.0 -4,-6 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000038520 Tbc1d17 ENSMUST00000145959 ENSMUSP00000121546 TRANSLATION nonsense_mediated_decay - - 1 546.0 0.0 7.516 0.0 524.8 0.0 -4,-6 0.0121 6 -2.0 MINOR ENSMUSG00000038520 Tbc1d17 ENSMUST00000139947 - NO_TRANSLATION retained_intron ENSMUSG00000038520 Tbc1d17 ENSMUST00000149921 - NO_TRANSLATION retained_intron ENSMUSG00000038520 Tbc1d17 ENSMUST00000207293 ENSMUSP00000146488 TRANSLATION protein_coding - - 3 215.0 0.0 0.0 0.0 298.1 0.0 -4,-6 0.0008 1 0.0 MINOR ENSMUSG00000038520 Tbc1d17 ENSMUST00000208890 ENSMUSP00000146691 TRANSLATION protein_coding start - 5 111.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000038520 Tbc1d17 ENSMUST00000153161 - NO_TRANSLATION retained_intron ENSMUSG00000038520 Tbc1d17 ENSMUST00000207532 ENSMUSP00000146935 TRANSLATION protein_coding stop - 5 75.0 0.0 0.0 0.0 104.8 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000048782 Insc ENSMUST00000206274 ENSMUSP00000145636 TRANSLATION protein_coding start/stop - 3 136.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048782 Insc ENSMUST00000161800 ENSMUSP00000125061 TRANSLATION protein_coding - - 5 579.0 0.0 1.2 6.2 104.2 0.0 -4,-5 0.5847 5 13.323 MINOR ENSMUSG00000048782 Insc ENSMUST00000136645 ENSMUSP00000119459 TRANSLATION protein_coding - CCDS40095.2 2 532.0 0.0 1.2 12.8 104.2 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000048782 Insc ENSMUST00000136347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048782 Insc ENSMUST00000139670 - NO_TRANSLATION retained_intron ENSMUSG00000048782 Insc ENSMUST00000150991 - NO_TRANSLATION retained_intron ENSMUSG00000048782 Insc ENSMUST00000117543 ENSMUSP00000112682 TRANSLATION protein_coding - CCDS40095.2 5 532.0 0.0 1.2 12.8 104.2 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000048782 Insc ENSMUST00000151464 ENSMUSP00000117296 TRANSLATION protein_coding stop - 1 53.0 0.0 1.0 0.0 78.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000090958 Lrrc32 ENSMUST00000205956 ENSMUSP00000145859 TRANSLATION protein_coding - CCDS52319.1 5 663.0 0.0 1.95 9.0 149.9 1.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000090958 Lrrc32 ENSMUST00000165205 ENSMUSP00000133205 TRANSLATION protein_coding - CCDS52319.1 5 663.0 0.0 1.95 9.0 149.9 1.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000090958 Lrrc32 ENSMUST00000205937 ENSMUSP00000146299 TRANSLATION protein_coding stop - 5 80.0 0.0 1.15 0.0 0.0 0.0 3,-2 0.0007 - -2.0 MINOR ENSMUSG00000030470 Csrp3 ENSMUST00000032658 ENSMUSP00000032658 TRANSLATION protein_coding - CCDS21305.1 1 194.0 16.0 4.525 28.5 106.4 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000030470 Csrp3 ENSMUST00000208146 - NO_TRANSLATION retained_intron ENSMUSG00000030470 Csrp3 ENSMUST00000167786 ENSMUSP00000129378 TRANSLATION protein_coding - CCDS21305.1 1 194.0 16.0 4.525 28.5 106.4 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000030470 Csrp3 ENSMUST00000208050 ENSMUSP00000146360 TRANSLATION protein_coding stop - 3 65.0 8.0 1.75 0.0 49.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000006599 Gtf2h1 ENSMUST00000107644 ENSMUSP00000103271 TRANSLATION protein_coding - CCDS80729.1 1 553.0 0.0 14.0 0.0 150.6 0.0 -4,-7 0.2827 8 12.0 MINOR ENSMUSG00000006599 Gtf2h1 ENSMUST00000006774 ENSMUSP00000006774 TRANSLATION protein_coding - CCDS21287.1 1 547.0 0.0 14.0 30.8 150.6 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000006599 Gtf2h1 ENSMUST00000144708 - NO_TRANSLATION retained_intron ENSMUSG00000006599 Gtf2h1 ENSMUST00000165031 ENSMUSP00000129337 TRANSLATION protein_coding stop - 2 144.0 0.0 2.75 0.0 90.9 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000006599 Gtf2h1 ENSMUST00000128420 ENSMUSP00000120008 TRANSLATION nonsense_mediated_decay - - 5 51.0 0.0 1.0 0.0 28.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000066273 Or51a39 ENSMUST00000084817 ENSMUSP00000081877 TRANSLATION protein_coding - CCDS21544.1 - 318.0 0.0 1.0 8.6 389.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066273 Or51a39 ENSMUST00000216312 ENSMUSP00000149588 TRANSLATION protein_coding - CCDS21544.1 5 318.0 0.0 1.0 8.6 389.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048067 Or10am5 ENSMUST00000213656 ENSMUSP00000149129 TRANSLATION protein_coding - CCDS20780.1 5 317.0 0.0 3.0 0.1 160.5 11.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048067 Or10am5 ENSMUST00000213504 ENSMUSP00000151168 TRANSLATION protein_coding - CCDS20780.1 2 317.0 0.0 3.0 0.1 160.5 11.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048067 Or10am5 ENSMUST00000207820 ENSMUSP00000147127 TRANSLATION protein_coding - CCDS20780.1 3 317.0 0.0 3.0 0.1 160.5 11.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048067 Or10am5 ENSMUST00000207075 ENSMUSP00000146672 TRANSLATION protein_coding stop - 2 162.0 0.0 1.0 0.0 64.4 6.0 -4,-7 0.0058 - -2.0 MINOR ENSMUSG00000048067 Or10am5 ENSMUST00000207043 ENSMUSP00000146944 TRANSLATION protein_coding stop - 2 191.0 0.0 1.75 0.0 77.0 8.0 -4,-7 0.0058 - -2.0 MINOR ENSMUSG00000048067 Or10am5 ENSMUST00000216447 ENSMUSP00000149880 TRANSLATION protein_coding - CCDS20780.1 5 317.0 0.0 3.0 0.1 160.5 11.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048067 Or10am5 ENSMUST00000051982 ENSMUSP00000056639 TRANSLATION protein_coding - CCDS20780.1 - 317.0 0.0 3.0 0.1 160.5 11.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000092456 V1rd19 ENSMUST00000173571 ENSMUSP00000133284 TRANSLATION protein_coding - CCDS52137.1 - 305.0 0.0 0.0 0.4 43.6 4.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000092456 V1rd19 ENSMUST00000236162 ENSMUSP00000158293 TRANSLATION protein_coding - CCDS52137.1 - 305.0 0.0 0.0 0.4 43.6 4.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096068 Or5p62 ENSMUST00000072035 ENSMUSP00000071918 TRANSLATION protein_coding - CCDS21707.1 - 314.0 0.0 1.0 10.4 169.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030494 Rhpn2 ENSMUST00000155140 - NO_TRANSLATION retained_intron ENSMUSG00000030494 Rhpn2 ENSMUST00000187997 - NO_TRANSLATION retained_intron ENSMUSG00000030494 Rhpn2 ENSMUST00000032705 ENSMUSP00000032705 TRANSLATION protein_coding - CCDS21148.1 1 686.0 0.0 12.05 19.1 349.2 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000053091 Lins1 ENSMUST00000065323 ENSMUSP00000071009 TRANSLATION nonsense_mediated_decay - - 1 231.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000053091 Lins1 ENSMUST00000130161 ENSMUSP00000118620 TRANSLATION nonsense_mediated_decay - - 1 231.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000053091 Lins1 ENSMUST00000128486 - NO_TRANSLATION retained_intron ENSMUSG00000053091 Lins1 ENSMUST00000132351 ENSMUSP00000115180 TRANSLATION protein_coding start/stop - 3 244.0 0.0 0.0 0.0 94.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053091 Lins1 ENSMUST00000153773 ENSMUSP00000119187 TRANSLATION protein_coding start/stop - 3 228.0 0.0 0.0 0.0 173.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053091 Lins1 ENSMUST00000153007 ENSMUSP00000121054 TRANSLATION protein_coding stop - 3 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053091 Lins1 ENSMUST00000133199 ENSMUSP00000115124 TRANSLATION nonsense_mediated_decay start - 5 226.0 0.0 0.0 0.0 238.4 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000053091 Lins1 ENSMUST00000150071 ENSMUSP00000115330 TRANSLATION protein_coding stop - 2 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053091 Lins1 ENSMUST00000077967 ENSMUSP00000077117 TRANSLATION protein_coding - CCDS57555.1 2 759.0 0.0 0.0 0.0 550.7 0.0 -4,-5 0.5741 1 2.0 ALTERNATIVE:2 ENSMUSG00000053091 Lins1 ENSMUST00000133771 ENSMUSP00000117270 TRANSLATION nonsense_mediated_decay - - 1 231.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000053091 Lins1 ENSMUST00000132181 - NO_TRANSLATION retained_intron ENSMUSG00000053091 Lins1 ENSMUST00000121777 ENSMUSP00000112404 TRANSLATION protein_coding - CCDS21348.2 2 764.0 0.0 0.0 0.0 550.7 0.0 -4,-5 1.0 1 2.0 PRINCIPAL:2 ENSMUSG00000031074 Fgf3 ENSMUST00000105898 ENSMUSP00000101518 TRANSLATION protein_coding - CCDS22051.1 1 245.0 7.0 2.2 0.4 159.7 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000031074 Fgf3 ENSMUST00000155320 ENSMUSP00000115205 TRANSLATION protein_coding stop - 3 156.0 1.0 2.1 0.0 127.2 0.0 3,-2 0.03 - -2.0 MINOR ENSMUSG00000056216 Cebpg ENSMUST00000070191 ENSMUSP00000064963 TRANSLATION protein_coding - CCDS21144.1 2 150.0 0.0 1.0 18.7 56.7 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000056216 Cebpg ENSMUST00000130491 ENSMUSP00000118588 TRANSLATION protein_coding - CCDS21144.1 1 150.0 0.0 1.0 18.7 56.7 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000056216 Cebpg ENSMUST00000205752 - NO_TRANSLATION retained_intron ENSMUSG00000056216 Cebpg ENSMUST00000206505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038763 Alpk3 ENSMUST00000107348 ENSMUSP00000102971 TRANSLATION protein_coding - CCDS40004.1 1 1680.0 4.0 3.8 0.0 153.4 0.0 -4,-6 1.0 35 16.0 PRINCIPAL:1 ENSMUSG00000038763 Alpk3 ENSMUST00000151115 - NO_TRANSLATION retained_intron ENSMUSG00000030376 Slc8a2 ENSMUST00000211649 ENSMUSP00000147497 TRANSLATION protein_coding - CCDS20845.1 1 921.0 19.0 3.04 4.7 569.3 7.0 4,-1 1.0 23 16.0 PRINCIPAL:3 ENSMUSG00000030376 Slc8a2 ENSMUST00000168693 ENSMUSP00000128926 TRANSLATION protein_coding - CCDS85220.1 1 915.0 19.0 3.04 4.7 569.3 7.0 4,-1 0.8751 22 16.0 ALTERNATIVE:1 ENSMUSG00000011096 Akt1s1 ENSMUST00000107882 ENSMUSP00000103514 TRANSLATION protein_coding - CCDS71954.1 3 283.0 0.0 1.08 0.0 164.6 0.0 -4,-5 0.1942 5 12.0 MINOR ENSMUSG00000011096 Akt1s1 ENSMUST00000107880 ENSMUSP00000103512 TRANSLATION protein_coding - CCDS21218.1 1 257.0 0.0 1.08 9.0 164.6 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000011096 Akt1s1 ENSMUST00000107885 ENSMUSP00000103517 TRANSLATION protein_coding - - 1 328.0 0.0 1.08 0.0 164.6 0.0 -4,-7 0.0523 5 12.0 MINOR ENSMUSG00000011096 Akt1s1 ENSMUST00000142880 ENSMUSP00000146332 TRANSLATION protein_coding start/stop - 3 111.0 0.0 0.0 0.0 102.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000011096 Akt1s1 ENSMUST00000150335 ENSMUSP00000122607 TRANSLATION protein_coding stop - 2 123.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000011096 Akt1s1 ENSMUST00000141311 ENSMUSP00000120690 TRANSLATION protein_coding stop - 2 193.0 0.0 0.0 0.0 51.8 0.0 -4,-7 0.0007 2 -2.0 MINOR ENSMUSG00000011096 Akt1s1 ENSMUST00000127783 ENSMUSP00000116149 TRANSLATION protein_coding stop - 5 247.0 0.0 1.08 0.0 135.4 0.0 -4,-5 0.0283 3 -2.0 MINOR ENSMUSG00000011096 Akt1s1 ENSMUST00000152091 - NO_TRANSLATION retained_intron ENSMUSG00000011096 Akt1s1 ENSMUST00000136232 ENSMUSP00000116541 TRANSLATION protein_coding stop - 2 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000011096 Akt1s1 ENSMUST00000208384 ENSMUSP00000147235 TRANSLATION protein_coding stop - 2 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000011096 Akt1s1 ENSMUST00000207223 ENSMUSP00000146484 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000011096 Akt1s1 ENSMUST00000054343 ENSMUSP00000049764 TRANSLATION protein_coding - CCDS21218.1 1 257.0 0.0 1.08 9.0 164.6 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000073972 Or52m2 ENSMUST00000098222 ENSMUSP00000095825 TRANSLATION protein_coding - CCDS21538.1 - 326.0 0.0 1.0 0.0 361.4 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073972 Or52m2 ENSMUST00000216776 ENSMUSP00000149901 TRANSLATION protein_coding - CCDS21538.1 5 326.0 0.0 1.0 0.0 361.4 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073964 Or51a8 ENSMUST00000098215 ENSMUSP00000095817 TRANSLATION protein_coding - CCDS21551.1 - 312.0 0.0 1.0 8.3 375.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073964 Or51a8 ENSMUST00000209778 ENSMUSP00000148181 TRANSLATION protein_coding - CCDS21551.1 5 312.0 0.0 1.0 8.3 375.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030443 Zfp583 ENSMUST00000135435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030443 Zfp583 ENSMUST00000165705 ENSMUSP00000129551 TRANSLATION protein_coding - CCDS39751.1 5 568.0 48.0 1.8 9.7 324.8 0.0 -4,-5 1.0 - 20.4 PRINCIPAL:1 ENSMUSG00000030443 Zfp583 ENSMUST00000108560 ENSMUSP00000104200 TRANSLATION protein_coding - CCDS39751.1 1 568.0 48.0 1.8 9.7 324.8 0.0 -4,-5 1.0 - 20.4 PRINCIPAL:1 ENSMUSG00000030443 Zfp583 ENSMUST00000123868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030443 Zfp583 ENSMUST00000127658 ENSMUSP00000118249 TRANSLATION protein_coding stop - 3 76.0 0.0 2.0 0.0 80.0 0.0 -4,-5 0.0253 - -2.0 MINOR ENSMUSG00000030443 Zfp583 ENSMUST00000062765 ENSMUSP00000053935 TRANSLATION protein_coding - CCDS39751.1 1 568.0 48.0 1.8 9.7 324.8 0.0 -4,-5 1.0 - 20.4 PRINCIPAL:1 ENSMUSG00000063047 Zfp780b ENSMUST00000205874 ENSMUSP00000145799 TRANSLATION protein_coding - - 1 106.0 0.0 2.0 0.0 82.8 0.0 -4,-5 0.0 - 4.284 MINOR ENSMUSG00000063047 Zfp780b ENSMUST00000205431 - NO_TRANSLATION retained_intron ENSMUSG00000063047 Zfp780b ENSMUST00000206685 ENSMUSP00000146224 TRANSLATION protein_coding - CCDS39853.1 1 806.0 87.0 2.8 0.0 465.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000063047 Zfp780b ENSMUST00000081618 ENSMUSP00000080324 TRANSLATION protein_coding - CCDS39853.1 5 806.0 87.0 2.8 0.0 465.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000063047 Zfp780b ENSMUST00000207098 - NO_TRANSLATION retained_intron ENSMUSG00000070797 Psg27 ENSMUST00000094794 ENSMUSP00000092388 TRANSLATION protein_coding - CCDS20873.1 1 474.0 0.0 3.0 0.4 145.1 0.0 -2,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050650 Mrgpra1 ENSMUST00000098438 ENSMUSP00000129978 TRANSLATION protein_coding - CCDS21295.2 1 331.0 0.0 1.0 0.1 32.2 0.0 -3,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000061723 Tnnt3 ENSMUST00000105945 ENSMUSP00000101565 TRANSLATION protein_coding - CCDS22031.1 1 248.0 0.0 4.45 0.4 116.9 0.0 -4,-5 0.3382 12 8.0 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000128294 ENSMUSP00000116223 TRANSLATION protein_coding stop - 5 107.0 0.0 1.75 0.0 48.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000061723 Tnnt3 ENSMUST00000105957 ENSMUSP00000101577 TRANSLATION protein_coding - - 5 259.0 0.0 4.45 0.0 116.9 0.0 -4,-5 0.0128 12 8.0 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000105955 ENSMUSP00000101575 TRANSLATION protein_coding - CCDS52455.1 1 255.0 0.0 4.45 0.1 116.9 0.0 -4,-5 0.2294 12 8.0 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000105941 ENSMUSP00000101561 TRANSLATION protein_coding - CCDS85474.1 1 248.0 0.0 4.25 0.4 116.9 0.0 -4,-5 0.2776 13 7.598 MINOR ENSMUSG00000061723 Tnnt3 ENSMUST00000169299 ENSMUSP00000127854 TRANSLATION protein_coding - CCDS85471.1 5 254.0 0.0 4.25 0.4 116.9 0.0 -4,-5 0.2305 13 7.598 MINOR ENSMUSG00000061723 Tnnt3 ENSMUST00000105947 ENSMUSP00000101567 TRANSLATION protein_coding - - 5 259.0 0.0 4.25 0.4 116.9 0.0 -4,-5 0.1084 13 7.598 MINOR ENSMUSG00000061723 Tnnt3 ENSMUST00000105949 ENSMUSP00000101569 TRANSLATION protein_coding - CCDS52457.1 5 244.0 0.0 4.45 2.9 116.9 0.0 -4,-5 1.0 12 8.864 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000179658 ENSMUSP00000136278 TRANSLATION protein_coding - CCDS52452.1 1 272.0 0.0 4.45 0.1 116.9 0.0 -4,-5 0.2203 13 8.0 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000105943 ENSMUSP00000101563 TRANSLATION protein_coding - CCDS85476.1 1 239.0 0.0 4.25 3.2 116.9 0.0 -4,-5 0.9289 13 8.598 PRINCIPAL:3 ENSMUSG00000061723 Tnnt3 ENSMUST00000105946 ENSMUSP00000101566 TRANSLATION protein_coding - CCDS85471.1 1 254.0 0.0 4.25 0.4 116.9 0.0 -4,-5 0.2305 13 7.598 MINOR ENSMUSG00000061723 Tnnt3 ENSMUST00000105953 ENSMUSP00000101573 TRANSLATION protein_coding - CCDS85475.1 1 262.0 0.0 4.45 0.1 116.9 0.0 -4,-5 0.2125 13 8.0 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000078497 ENSMUSP00000077587 TRANSLATION protein_coding - CCDS52454.1 1 268.0 0.0 4.45 0.1 116.9 0.0 -4,-5 0.2153 13 8.0 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000144259 - NO_TRANSLATION retained_intron ENSMUSG00000061723 Tnnt3 ENSMUST00000146804 ENSMUSP00000116087 TRANSLATION protein_coding start/stop - 5 214.0 0.0 3.95 0.0 116.9 0.0 -4,-5 0.0021 11 -2.0 MINOR ENSMUSG00000061723 Tnnt3 ENSMUST00000209807 - NO_TRANSLATION retained_intron ENSMUSG00000061723 Tnnt3 ENSMUST00000105942 ENSMUSP00000101562 TRANSLATION protein_coding - CCDS85477.1 1 239.0 0.0 4.45 2.1 116.9 0.0 -4,-5 0.8549 12 8.5 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000105948 ENSMUSP00000101568 TRANSLATION protein_coding - CCDS85472.1 1 250.0 0.0 4.25 0.4 116.9 0.0 -4,-5 0.2488 13 7.598 MINOR ENSMUSG00000061723 Tnnt3 ENSMUST00000105954 ENSMUSP00000101574 TRANSLATION protein_coding - CCDS52456.1 1 263.0 0.0 4.45 0.1 116.9 0.0 -4,-5 0.2115 13 8.0 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000105952 ENSMUSP00000101572 TRANSLATION protein_coding - CCDS52453.1 1 259.0 0.0 4.45 0.4 116.9 0.0 -4,-5 0.2484 12 8.0 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000153262 - NO_TRANSLATION retained_intron ENSMUSG00000061723 Tnnt3 ENSMUST00000074187 ENSMUSP00000073815 TRANSLATION protein_coding - CCDS22031.1 1 248.0 0.0 4.45 0.4 116.9 0.0 -4,-5 0.3382 12 8.0 ALTERNATIVE:2 ENSMUSG00000061723 Tnnt3 ENSMUST00000125649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061723 Tnnt3 ENSMUST00000105958 ENSMUSP00000101578 TRANSLATION protein_coding - CCDS52451.1 1 272.0 0.0 4.25 0.1 116.9 0.0 -4,-5 0.1407 14 7.598 MINOR ENSMUSG00000061723 Tnnt3 ENSMUST00000105944 ENSMUSP00000101564 TRANSLATION protein_coding - CCDS85473.1 1 250.0 0.0 4.45 1.4 116.9 0.0 -4,-5 0.4852 12 8.182 ALTERNATIVE:2 ENSMUSG00000038738 Shank1 ENSMUST00000127164 - NO_TRANSLATION retained_intron ENSMUSG00000038738 Shank1 ENSMUST00000107938 ENSMUSP00000103571 TRANSLATION protein_coding - CCDS52229.1 5 2167.0 0.0 13.028 0.4 279.3 0.0 -4,-5 0.9816 44 8.0 PRINCIPAL:4 ENSMUSG00000038738 Shank1 ENSMUST00000107935 ENSMUSP00000103568 TRANSLATION protein_coding - - 5 2159.0 0.0 13.028 0.0 279.3 0.0 -4,-5 1.0 43 8.0 ALTERNATIVE:2 ENSMUSG00000038738 Shank1 ENSMUST00000154776 - NO_TRANSLATION retained_intron ENSMUSG00000038738 Shank1 ENSMUST00000134470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038738 Shank1 ENSMUST00000107934 ENSMUSP00000103567 TRANSLATION protein_coding - - 5 2158.0 0.0 12.83 0.1 279.3 0.0 -4,-5 0.9544 44 7.604 ALTERNATIVE:2 ENSMUSG00000005611 Irag1 ENSMUST00000125758 ENSMUSP00000114578 TRANSLATION protein_coding - CCDS52362.1 2 921.0 0.0 0.0 0.1 665.6 1.0 -4,-6 0.2961 19 6.0 MINOR ENSMUSG00000005611 Irag1 ENSMUST00000127935 ENSMUSP00000120045 TRANSLATION protein_coding start - 1 715.0 0.0 0.0 0.0 665.6 1.0 -4,-2 0.1205 18 -2.0 MINOR ENSMUSG00000005611 Irag1 ENSMUST00000005751 ENSMUSP00000005751 TRANSLATION protein_coding - CCDS21749.1 1 856.0 0.0 0.0 5.4 665.6 1.0 -4,-5 1.0 19 8.0 PRINCIPAL:1 ENSMUSG00000005611 Irag1 ENSMUST00000154466 ENSMUSP00000120765 TRANSLATION protein_coding stop - 2 121.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005611 Irag1 ENSMUST00000142368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005611 Irag1 ENSMUST00000149923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005611 Irag1 ENSMUST00000135590 - NO_TRANSLATION retained_intron ENSMUSG00000049091 Sephs2 ENSMUST00000082428 ENSMUSP00000081009 TRANSLATION protein_coding - CCDS21863.1 - 452.0 13.0 0.48 4.2 101.3 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000094305 Scgb2b20 ENSMUST00000179248 ENSMUSP00000137484 TRANSLATION protein_coding - CCDS21131.1 1 112.0 0.0 2.3 0.1 102.0 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039428 Tmem135 ENSMUST00000137723 ENSMUSP00000114866 TRANSLATION protein_coding stop - 3 113.0 0.0 1.08 0.0 142.4 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000039428 Tmem135 ENSMUST00000139320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039428 Tmem135 ENSMUST00000041968 ENSMUSP00000042783 TRANSLATION protein_coding - CCDS21440.1 1 458.0 0.0 4.7015 14.1 275.5 4.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000039428 Tmem135 ENSMUST00000136267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039428 Tmem135 ENSMUST00000124477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039428 Tmem135 ENSMUST00000207335 - NO_TRANSLATION retained_intron ENSMUSG00000039428 Tmem135 ENSMUST00000156153 - NO_TRANSLATION retained_intron ENSMUSG00000039428 Tmem135 ENSMUST00000154434 - NO_TRANSLATION retained_intron ENSMUSG00000039428 Tmem135 ENSMUST00000117852 ENSMUSP00000114097 TRANSLATION protein_coding - - 1 371.0 0.0 3.0515 0.0 275.5 3.0 -4,-6 0.0287 7 8.7 MINOR ENSMUSG00000094545 Vmn1r101 ENSMUST00000164245 ENSMUSP00000129819 TRANSLATION protein_coding - CCDS52073.1 - 307.0 0.0 0.0 0.4 52.3 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030748 Il4ra ENSMUST00000205985 ENSMUSP00000145725 TRANSLATION protein_coding stop - 3 140.0 0.0 2.75 0.0 126.2 0.0 1,-4 0.0541 1 -2.0 MINOR ENSMUSG00000030748 Il4ra ENSMUST00000033004 ENSMUSP00000033004 TRANSLATION protein_coding - CCDS40121.1 1 810.0 0.0 6.2 0.0 126.2 0.0 1,-4 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000030748 Il4ra ENSMUST00000206217 ENSMUSP00000146185 TRANSLATION protein_coding stop - 2 42.0 0.0 0.5 0.0 0.0 0.0 1,-4 0.0053 1 -2.0 MINOR ENSMUSG00000030748 Il4ra ENSMUST00000206681 - NO_TRANSLATION retained_intron ENSMUSG00000030748 Il4ra ENSMUST00000206846 ENSMUSP00000145824 TRANSLATION nonsense_mediated_decay - - 1 230.0 0.0 4.75 0.0 126.2 0.0 1,-4 0.0586 1 -2.0 MINOR ENSMUSG00000046591 Ticrr ENSMUST00000206677 - NO_TRANSLATION retained_intron ENSMUSG00000046591 Ticrr ENSMUST00000205750 - NO_TRANSLATION retained_intron ENSMUSG00000046591 Ticrr ENSMUST00000206622 ENSMUSP00000146155 TRANSLATION nonsense_mediated_decay - - 1 718.0 0.0 0.0 0.0 708.0 0.0 -4,-7 0.0506 1 -2.0 MINOR ENSMUSG00000046591 Ticrr ENSMUST00000206017 ENSMUSP00000146221 TRANSLATION nonsense_mediated_decay - - 2 409.0 0.0 0.0 0.0 223.6 0.0 -4,-7 0.0013 1 -2.0 MINOR ENSMUSG00000046591 Ticrr ENSMUST00000035977 ENSMUSP00000041377 TRANSLATION protein_coding - CCDS21384.1 1 1889.0 0.0 0.0 0.0 1190.5 0.0 -4,-7 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000046591 Ticrr ENSMUST00000206072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046591 Ticrr ENSMUST00000206591 ENSMUSP00000145735 TRANSLATION nonsense_mediated_decay - - 1 968.0 0.0 0.0 0.0 1096.6 0.0 -4,-7 0.1034 1 -2.0 MINOR ENSMUSG00000003380 Rabac1 ENSMUST00000205771 - NO_TRANSLATION retained_intron ENSMUSG00000003380 Rabac1 ENSMUST00000206941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003380 Rabac1 ENSMUST00000205871 ENSMUSP00000146042 TRANSLATION protein_coding - - 1 226.0 0.0 3.75 0.0 131.6 1.0 -4,-6 0.0153 2 12.0 MINOR ENSMUSG00000003380 Rabac1 ENSMUST00000206868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003380 Rabac1 ENSMUST00000076961 ENSMUSP00000076227 TRANSLATION protein_coding - CCDS20968.1 1 185.0 0.0 3.75 11.0 131.6 1.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000003380 Rabac1 ENSMUST00000206222 - NO_TRANSLATION retained_intron ENSMUSG00000035203 Epn1 ENSMUST00000208634 ENSMUSP00000146638 TRANSLATION protein_coding - - 5 576.0 9.0 3.25 9.0 203.3 0.0 -4,-2 0.8298 11 17.0 ALTERNATIVE:1 ENSMUSG00000035203 Epn1 ENSMUST00000098845 ENSMUSP00000096445 TRANSLATION protein_coding - CCDS20758.1 1 575.0 9.0 3.25 9.0 203.3 0.0 -4,-2 1.0 11 17.0 PRINCIPAL:4 ENSMUSG00000035203 Epn1 ENSMUST00000045277 ENSMUSP00000043340 TRANSLATION protein_coding - CCDS20758.1 1 575.0 9.0 3.25 9.0 203.3 0.0 -4,-2 1.0 11 17.0 PRINCIPAL:4 ENSMUSG00000035203 Epn1 ENSMUST00000153169 ENSMUSP00000122594 TRANSLATION protein_coding stop - 2 54.0 6.0 1.0 0.0 45.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000035203 Epn1 ENSMUST00000146317 ENSMUSP00000116571 TRANSLATION protein_coding stop - 3 90.0 9.0 2.25 0.0 115.7 0.0 -4,-2 0.0009 1 -2.0 MINOR ENSMUSG00000035203 Epn1 ENSMUST00000155436 - NO_TRANSLATION retained_intron ENSMUSG00000035203 Epn1 ENSMUST00000152083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030744 Rps3 ENSMUST00000032998 ENSMUSP00000032998 TRANSLATION protein_coding - CCDS40031.1 1 243.0 0.0 5.66 29.5 44.8 0.0 -4,-6 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000030744 Rps3 ENSMUST00000128725 - NO_TRANSLATION retained_intron ENSMUSG00000030744 Rps3 ENSMUST00000128174 - NO_TRANSLATION retained_intron ENSMUSG00000030744 Rps3 ENSMUST00000208532 ENSMUSP00000146709 TRANSLATION protein_coding - - 5 144.0 0.0 3.33 0.0 44.8 0.0 -4,-6 0.0007 11 7.338 MINOR ENSMUSG00000030744 Rps3 ENSMUST00000107096 ENSMUSP00000102713 TRANSLATION protein_coding - - 3 191.0 0.0 4.33 0.0 44.8 0.0 -4,-6 0.0008 12 9.342 MINOR ENSMUSG00000051200 Or5e1 ENSMUST00000055146 ENSMUSP00000050578 TRANSLATION protein_coding - CCDS21726.1 - 309.0 0.0 1.0 13.5 186.2 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000051200 Or5e1 ENSMUST00000214670 ENSMUSP00000149440 TRANSLATION protein_coding - CCDS21726.1 5 309.0 0.0 1.0 13.5 186.2 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000035582 Gdpd4 ENSMUST00000041860 ENSMUSP00000036772 TRANSLATION protein_coding - CCDS52318.1 1 632.0 5.0 11.15 0.1 63.2 6.0 -4,-5 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000035582 Gdpd4 ENSMUST00000170049 ENSMUSP00000131960 TRANSLATION protein_coding - CCDS52318.1 5 632.0 5.0 11.15 0.1 63.2 6.0 -4,-5 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000030615 Tmem126a ENSMUST00000153393 - NO_TRANSLATION retained_intron ENSMUSG00000030615 Tmem126a ENSMUST00000032844 ENSMUSP00000032844 TRANSLATION protein_coding - CCDS21447.1 1 196.0 0.0 3.93 0.0 271.4 2.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000030615 Tmem126a ENSMUST00000136652 ENSMUSP00000115803 TRANSLATION nonsense_mediated_decay - - 1 89.0 0.0 1.6 0.0 102.3 1.0 -4,-5 0.0025 1 -2.0 MINOR ENSMUSG00000030615 Tmem126a ENSMUST00000207159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030615 Tmem126a ENSMUST00000208639 - NO_TRANSLATION retained_intron ENSMUSG00000059479 B3gnt8 ENSMUST00000206824 - NO_TRANSLATION retained_intron ENSMUSG00000059479 B3gnt8 ENSMUST00000205281 ENSMUSP00000146127 TRANSLATION protein_coding stop - 3 93.0 0.0 0.8 0.0 0.0 0.0 0,-4 0.0 1 -2.0 MINOR ENSMUSG00000059479 B3gnt8 ENSMUST00000206940 ENSMUSP00000145797 TRANSLATION nonsense_mediated_decay - CCDS20989.1 1 389.0 0.0 1.8 8.0 104.6 0.0 0,-4 1.0 1 -2.0 MINOR ENSMUSG00000059479 B3gnt8 ENSMUST00000076034 ENSMUSP00000092277 TRANSLATION protein_coding - CCDS20989.1 1 389.0 0.0 1.8 8.0 104.6 0.0 0,-4 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000074220 Zfp382 ENSMUST00000153792 ENSMUSP00000123508 TRANSLATION protein_coding stop - 2 87.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000074220 Zfp382 ENSMUST00000156543 - NO_TRANSLATION retained_intron ENSMUSG00000074220 Zfp382 ENSMUST00000098596 ENSMUSP00000096196 TRANSLATION protein_coding - CCDS39877.1 1 579.0 36.0 1.0 0.0 281.8 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000025479 Cyp2e1 ENSMUST00000210403 - NO_TRANSLATION retained_intron ENSMUSG00000025479 Cyp2e1 ENSMUST00000026552 ENSMUSP00000026552 TRANSLATION protein_coding - CCDS21985.1 1 493.0 34.0 8.6 11.0 488.0 0.0 -1,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000025479 Cyp2e1 ENSMUST00000209253 ENSMUSP00000148090 TRANSLATION protein_coding - - 5 434.0 31.0 7.6 0.0 425.7 0.0 -1,-5 0.0094 12 10.266 MINOR ENSMUSG00000025479 Cyp2e1 ENSMUST00000210235 ENSMUSP00000147845 TRANSLATION protein_coding - - 1 333.0 24.0 5.6 0.0 206.3 0.0 -1,-5 0.0 10 0.0 MINOR ENSMUSG00000107023 Gm42715 ENSMUST00000206825 ENSMUSP00000146316 TRANSLATION nonsense_mediated_decay,RT start - 3 254.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0015 - -2.0 ALTERNATIVE:2 ENSMUSG00000107023 Gm42715 ENSMUST00000189629 ENSMUSP00000139644 TRANSLATION nonsense_mediated_decay,RT start - 5 3095.0 0.0 9.55 0.0 366.1 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000040298 Btbd16 ENSMUST00000208593 ENSMUSP00000146849 TRANSLATION protein_coding - - 5 506.0 0.0 2.07 6.1 0.0 0.0 -4,0 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000040298 Btbd16 ENSMUST00000207155 - NO_TRANSLATION retained_intron ENSMUSG00000040298 Btbd16 ENSMUST00000207219 ENSMUSP00000146827 TRANSLATION nonsense_mediated_decay - - 5 329.0 0.0 1.47 0.0 0.0 0.0 -4,-1 0.0304 - -2.0 MINOR ENSMUSG00000040298 Btbd16 ENSMUST00000048453 ENSMUSP00000035433 TRANSLATION protein_coding - CCDS52416.1 5 522.0 0.0 2.07 0.0 0.0 0.0 -4,-1 0.3218 - 6.0 MINOR ENSMUSG00000030393 Zik1 ENSMUST00000032551 ENSMUSP00000032551 TRANSLATION protein_coding - CCDS20792.1 1 463.0 36.0 1.0 0.0 261.5 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000005621 Zfp592 ENSMUST00000107353 ENSMUSP00000102976 TRANSLATION protein_coding - CCDS40003.2 1 1262.0 27.0 2.7 0.8 98.0 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000005621 Zfp592 ENSMUST00000176477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005621 Zfp592 ENSMUST00000149508 - NO_TRANSLATION retained_intron ENSMUSG00000005621 Zfp592 ENSMUST00000125137 - NO_TRANSLATION retained_intron ENSMUSG00000041769 Ppp2r2d ENSMUST00000155672 ENSMUSP00000119004 TRANSLATION protein_coding - CCDS85447.1 1 288.0 0.0 4.5 15.0 0.0 0.0 -4,-5 0.6316 - 1.808 MINOR ENSMUSG00000041769 Ppp2r2d ENSMUST00000041097 ENSMUSP00000040321 TRANSLATION protein_coding - CCDS21950.1 1 453.0 0.0 8.66 32.0 0.0 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000041769 Ppp2r2d ENSMUST00000140047 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041769 Ppp2r2d ENSMUST00000148453 ENSMUSP00000119183 TRANSLATION nonsense_mediated_decay - - 3 71.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0034 - -2.0 MINOR ENSMUSG00000041769 Ppp2r2d ENSMUST00000136824 ENSMUSP00000133380 TRANSLATION nonsense_mediated_decay start - 5 69.0 0.0 1.915 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000041769 Ppp2r2d ENSMUST00000128157 - NO_TRANSLATION retained_intron ENSMUSG00000041769 Ppp2r2d ENSMUST00000172764 ENSMUSP00000133810 TRANSLATION nonsense_mediated_decay start - 5 128.0 0.0 3.08 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000041769 Ppp2r2d ENSMUST00000152104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041769 Ppp2r2d ENSMUST00000174090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096294 Vmn2r47 ENSMUST00000174433 ENSMUSP00000159160 TRANSLATION protein_coding - - - 852.0 4.0 2.1 0.1 375.9 0.0 2,-3 0.9065 - 16.0 PRINCIPAL:1 ENSMUSG00000025586 Cpeb1 ENSMUST00000136689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025586 Cpeb1 ENSMUST00000178892 ENSMUSP00000137079 TRANSLATION protein_coding - CCDS57557.1 1 562.0 8.0 6.75 12.1 700.2 0.0 -4,-5 0.9609 2 17.34 ALTERNATIVE:1 ENSMUSG00000025586 Cpeb1 ENSMUST00000153419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025586 Cpeb1 ENSMUST00000098331 ENSMUSP00000095936 TRANSLATION protein_coding - CCDS40007.1 1 561.0 8.0 6.75 14.3 704.9 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:4 ENSMUSG00000025586 Cpeb1 ENSMUST00000130310 ENSMUSP00000120139 TRANSLATION protein_coding start - 5 551.0 8.0 6.75 0.0 691.3 0.0 -4,-5 0.1092 2 -2.0 MINOR ENSMUSG00000025586 Cpeb1 ENSMUST00000124937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025586 Cpeb1 ENSMUST00000152319 - NO_TRANSLATION retained_intron ENSMUSG00000025586 Cpeb1 ENSMUST00000135177 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025586 Cpeb1 ENSMUST00000151661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073974 Or52p2 ENSMUST00000098224 ENSMUSP00000095827 TRANSLATION protein_coding - CCDS21536.1 - 315.0 0.0 1.0 13.0 350.1 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073974 Or52p2 ENSMUST00000213540 ENSMUSP00000150582 TRANSLATION protein_coding - CCDS21536.1 5 315.0 0.0 1.0 13.0 350.1 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000035596 Mboat7 ENSMUST00000128364 ENSMUSP00000120521 TRANSLATION protein_coding start - 3 123.0 0.0 2.75 0.0 0.0 1.0 0,-3 0.0034 1 -2.0 MINOR ENSMUSG00000035596 Mboat7 ENSMUST00000133223 - NO_TRANSLATION retained_intron ENSMUSG00000035596 Mboat7 ENSMUST00000150684 - NO_TRANSLATION retained_intron ENSMUSG00000035596 Mboat7 ENSMUST00000131688 - NO_TRANSLATION retained_intron ENSMUSG00000035596 Mboat7 ENSMUST00000127106 ENSMUSP00000116446 TRANSLATION nonsense_mediated_decay - - 5 70.0 0.0 2.0 0.0 0.0 4.0 -2,-5 0.0023 - -2.0 MINOR ENSMUSG00000035596 Mboat7 ENSMUST00000206379 ENSMUSP00000146067 TRANSLATION protein_coding stop - 5 120.0 0.0 3.0 0.0 0.0 5.0 -2,-5 0.0023 - -2.0 MINOR ENSMUSG00000035596 Mboat7 ENSMUST00000206571 ENSMUSP00000145801 TRANSLATION protein_coding stop - 5 20.0 0.0 0.75 0.0 0.0 0.0 -2,-7 0.0 - -2.0 MINOR ENSMUSG00000035596 Mboat7 ENSMUST00000038608 ENSMUSP00000037107 TRANSLATION protein_coding - CCDS20724.1 1 473.0 0.0 9.83 9.4 120.8 11.0 -2,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000035596 Mboat7 ENSMUST00000205644 - NO_TRANSLATION retained_intron ENSMUSG00000035596 Mboat7 ENSMUST00000206448 - NO_TRANSLATION retained_intron ENSMUSG00000035596 Mboat7 ENSMUST00000150785 - NO_TRANSLATION retained_intron ENSMUSG00000035596 Mboat7 ENSMUST00000206343 ENSMUSP00000145657 TRANSLATION nonsense_mediated_decay - - 5 85.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000035596 Mboat7 ENSMUST00000118710 ENSMUSP00000112710 TRANSLATION protein_coding stop - 5 111.0 0.0 1.5 0.0 30.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000030423 Pop4 ENSMUST00000205899 ENSMUSP00000146204 TRANSLATION nonsense_mediated_decay - - 5 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030423 Pop4 ENSMUST00000206221 ENSMUSP00000145810 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030423 Pop4 ENSMUST00000205959 - NO_TRANSLATION retained_intron ENSMUSG00000030423 Pop4 ENSMUST00000032585 ENSMUSP00000032585 TRANSLATION protein_coding - CCDS39915.1 1 221.0 0.0 3.9 12.1 92.4 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000030423 Pop4 ENSMUST00000205753 ENSMUSP00000146119 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030423 Pop4 ENSMUST00000206045 - NO_TRANSLATION retained_intron ENSMUSG00000005533 Igf1r ENSMUST00000208871 - NO_TRANSLATION retained_intron ENSMUSG00000005533 Igf1r ENSMUST00000207487 - NO_TRANSLATION retained_intron ENSMUSG00000005533 Igf1r ENSMUST00000208731 - NO_TRANSLATION retained_intron ENSMUSG00000005533 Igf1r ENSMUST00000005671 ENSMUSP00000005671 TRANSLATION protein_coding - CCDS21355.1 1 1369.0 19.0 16.53 10.6 632.0 0.0 3,-1 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000005533 Igf1r ENSMUST00000207621 - NO_TRANSLATION retained_intron ENSMUSG00000005533 Igf1r ENSMUST00000208348 - NO_TRANSLATION retained_intron ENSMUSG00000030373 Psg28 ENSMUST00000019291 ENSMUSP00000019291 TRANSLATION protein_coding - CCDS20870.1 1 472.0 0.0 2.68 0.4 158.7 0.0 -1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036570 Fxyd1 ENSMUST00000206328 ENSMUSP00000145712 TRANSLATION protein_coding - CCDS21123.1 3 92.0 0.0 2.41 4.6 95.9 1.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000036570 Fxyd1 ENSMUST00000206317 - NO_TRANSLATION retained_intron ENSMUSG00000036570 Fxyd1 ENSMUST00000206012 ENSMUSP00000146295 TRANSLATION protein_coding - CCDS21123.1 5 92.0 0.0 2.41 4.6 95.9 1.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000036570 Fxyd1 ENSMUST00000071697 ENSMUSP00000071617 TRANSLATION protein_coding - CCDS21123.1 3 92.0 0.0 2.41 4.6 95.9 1.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000036570 Fxyd1 ENSMUST00000205392 - NO_TRANSLATION retained_intron ENSMUSG00000036570 Fxyd1 ENSMUST00000205439 ENSMUSP00000146064 TRANSLATION protein_coding - CCDS21123.1 5 92.0 0.0 2.41 4.6 95.9 1.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000036570 Fxyd1 ENSMUST00000206030 ENSMUSP00000146129 TRANSLATION protein_coding start - 1 73.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000036570 Fxyd1 ENSMUST00000205542 - NO_TRANSLATION retained_intron ENSMUSG00000036570 Fxyd1 ENSMUST00000205917 - NO_TRANSLATION retained_intron ENSMUSG00000036570 Fxyd1 ENSMUST00000108110 ENSMUSP00000103745 TRANSLATION protein_coding - CCDS21123.1 1 92.0 0.0 2.41 4.6 95.9 1.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000036570 Fxyd1 ENSMUST00000206522 - NO_TRANSLATION retained_intron ENSMUSG00000036570 Fxyd1 ENSMUST00000206860 ENSMUSP00000146288 TRANSLATION protein_coding - CCDS21123.1 5 92.0 0.0 2.41 4.6 95.9 1.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000036570 Fxyd1 ENSMUST00000205778 ENSMUSP00000145818 TRANSLATION protein_coding - CCDS21123.1 3 92.0 0.0 2.41 4.6 95.9 1.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000036570 Fxyd1 ENSMUST00000205807 ENSMUSP00000145990 TRANSLATION protein_coding - - 3 67.0 0.0 1.66 0.0 0.0 0.0 3,-2 0.0027 1 4.134 MINOR ENSMUSG00000036570 Fxyd1 ENSMUST00000206305 ENSMUSP00000145589 TRANSLATION protein_coding - CCDS21123.1 1 92.0 0.0 2.41 4.6 95.9 1.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000036570 Fxyd1 ENSMUST00000206474 ENSMUSP00000145920 TRANSLATION protein_coding - CCDS21123.1 1 92.0 0.0 2.41 4.6 95.9 1.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000036570 Fxyd1 ENSMUST00000039909 ENSMUSP00000048460 TRANSLATION protein_coding - CCDS21123.1 5 92.0 0.0 2.41 4.6 95.9 1.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000057461 Or52s1b ENSMUST00000218115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057461 Or52s1b ENSMUST00000216581 ENSMUSP00000150894 TRANSLATION protein_coding - CCDS21563.1 5 314.0 0.0 1.0 5.3 348.4 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000057461 Or52s1b ENSMUST00000074272 ENSMUSP00000073884 TRANSLATION protein_coding - CCDS21563.1 - 314.0 0.0 1.0 5.3 348.4 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000057513 Vmn1r177 ENSMUST00000073967 ENSMUSP00000073621 TRANSLATION protein_coding - CCDS20934.1 - 309.0 0.0 0.0 0.0 46.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030505 Prmt3 ENSMUST00000145666 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030505 Prmt3 ENSMUST00000130907 - NO_TRANSLATION retained_intron ENSMUSG00000030505 Prmt3 ENSMUST00000207216 - NO_TRANSLATION retained_intron ENSMUSG00000030505 Prmt3 ENSMUST00000032715 ENSMUSP00000032715 TRANSLATION protein_coding - CCDS21307.1 1 528.0 20.0 12.08 9.2 37.8 0.0 -4,-5 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000030505 Prmt3 ENSMUST00000146052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030505 Prmt3 ENSMUST00000148996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030505 Prmt3 ENSMUST00000147401 ENSMUSP00000115155 TRANSLATION nonsense_mediated_decay - - 5 64.0 3.0 0.93 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030505 Prmt3 ENSMUST00000152127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030505 Prmt3 ENSMUST00000140656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062556 Scgb1b2 ENSMUST00000080635 ENSMUSP00000079468 TRANSLATION protein_coding - CCDS39896.1 1 93.0 0.0 1.48 0.9 77.7 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000118560 Lim2 ENSMUST00000004732 ENSMUSP00000004732 TRANSLATION protein_coding - CCDS21168.1 1 173.0 0.0 2.5 28.0 140.9 0.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000053175 Bcl3 ENSMUST00000135609 ENSMUSP00000117754 TRANSLATION protein_coding start - 3 114.0 0.0 1.5 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000053175 Bcl3 ENSMUST00000152768 - NO_TRANSLATION retained_intron ENSMUSG00000053175 Bcl3 ENSMUST00000123375 - NO_TRANSLATION retained_intron ENSMUSG00000053175 Bcl3 ENSMUST00000139680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053175 Bcl3 ENSMUST00000141996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053175 Bcl3 ENSMUST00000120537 ENSMUSP00000113851 TRANSLATION protein_coding - CCDS20914.2 1 448.0 0.0 5.5 6.6 103.7 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000048425 Or52x1 ENSMUST00000214147 ENSMUSP00000150746 TRANSLATION protein_coding - CCDS21645.1 5 317.0 0.0 1.0 10.2 306.0 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048425 Or52x1 ENSMUST00000216143 ENSMUSP00000149307 TRANSLATION protein_coding - CCDS21645.1 5 317.0 0.0 1.0 10.2 306.0 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048425 Or52x1 ENSMUST00000050157 ENSMUSP00000049601 TRANSLATION protein_coding - CCDS21645.1 - 317.0 0.0 1.0 10.2 306.0 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048425 Or52x1 ENSMUST00000216613 ENSMUSP00000148898 TRANSLATION protein_coding - CCDS21645.1 5 317.0 0.0 1.0 10.2 306.0 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030878 Cdr2 ENSMUST00000207722 - NO_TRANSLATION retained_intron ENSMUSG00000030878 Cdr2 ENSMUST00000033169 ENSMUSP00000033169 TRANSLATION protein_coding - CCDS21798.1 1 455.0 0.0 0.0 9.6 0.0 0.0 -4,-5 1.0 5 3.0 PRINCIPAL:1 ENSMUSG00000030878 Cdr2 ENSMUST00000140247 ENSMUSP00000146376 TRANSLATION nonsense_mediated_decay start - 3 91.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0207 - -2.0 MINOR ENSMUSG00000035239 Neu3 ENSMUST00000036331 ENSMUSP00000045222 TRANSLATION protein_coding - CCDS21489.1 1 418.0 3.0 0.904 0.4 124.2 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000030725 Lipt2 ENSMUST00000032967 ENSMUSP00000032967 TRANSLATION protein_coding - CCDS21494.1 1 231.0 0.0 2.635 9.7 21.2 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000030725 Lipt2 ENSMUST00000207825 ENSMUSP00000147056 TRANSLATION protein_coding start - 5 68.0 0.0 0.12 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000030450 Oca2 ENSMUST00000156886 ENSMUSP00000121798 TRANSLATION protein_coding stop - 3 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030450 Oca2 ENSMUST00000144739 ENSMUSP00000119529 TRANSLATION nonsense_mediated_decay - - 1 136.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030450 Oca2 ENSMUST00000152693 ENSMUSP00000119099 TRANSLATION nonsense_mediated_decay - - 1 307.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0046 - -2.0 MINOR ENSMUSG00000030450 Oca2 ENSMUST00000032633 ENSMUSP00000032633 TRANSLATION protein_coding - CCDS21319.1 1 833.0 0.0 1.33 0.1 186.9 8.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030450 Oca2 ENSMUST00000154559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030450 Oca2 ENSMUST00000155533 ENSMUSP00000145823 TRANSLATION protein_coding stop - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006333 Rps9 ENSMUST00000108624 ENSMUSP00000104264 TRANSLATION protein_coding - - 5 79.0 0.0 2.0 2.2 28.5 0.0 -4,-2 0.0344 1 3.948 MINOR ENSMUSG00000006333 Rps9 ENSMUST00000146927 ENSMUSP00000116623 TRANSLATION nonsense_mediated_decay start - 2 135.0 0.0 3.0 0.0 53.7 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000006333 Rps9 ENSMUST00000108623 ENSMUSP00000104263 TRANSLATION protein_coding - - 1 139.0 0.0 3.0 0.0 53.7 0.0 -4,-2 0.0008 7 7.902 MINOR ENSMUSG00000006333 Rps9 ENSMUST00000006496 ENSMUSP00000006496 TRANSLATION protein_coding - CCDS20726.1 1 194.0 0.0 4.33 26.0 70.7 0.0 -4,-2 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000006333 Rps9 ENSMUST00000136858 - NO_TRANSLATION retained_intron ENSMUSG00000006333 Rps9 ENSMUST00000139818 ENSMUSP00000114894 TRANSLATION protein_coding stop - 3 57.0 0.0 1.5 0.0 22.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000006333 Rps9 ENSMUST00000128729 - NO_TRANSLATION retained_intron ENSMUSG00000006333 Rps9 ENSMUST00000146303 - NO_TRANSLATION retained_intron ENSMUSG00000006333 Rps9 ENSMUST00000108625 ENSMUSP00000104265 TRANSLATION protein_coding - CCDS20726.1 2 194.0 0.0 4.33 26.0 70.7 0.0 -4,-2 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000006333 Rps9 ENSMUST00000126562 ENSMUSP00000120736 TRANSLATION protein_coding - - 2 136.0 0.0 3.0 0.0 53.4 0.0 -4,-2 0.0008 7 7.872 MINOR ENSMUSG00000041343 Ankrd42 ENSMUST00000207151 ENSMUSP00000146370 TRANSLATION nonsense_mediated_decay - - 1 152.0 0.0 2.5 0.0 55.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000041343 Ankrd42 ENSMUST00000138267 ENSMUSP00000146446 TRANSLATION protein_coding - - 1 356.0 0.0 5.24 0.0 135.4 0.0 -4,-7 0.0561 1 8.0 ALTERNATIVE:2 ENSMUSG00000041343 Ankrd42 ENSMUST00000056106 ENSMUSP00000061208 TRANSLATION protein_coding - - 1 527.0 0.0 5.14 0.0 135.3 0.0 -4,-7 0.2226 2 7.402 ALTERNATIVE:2 ENSMUSG00000041343 Ankrd42 ENSMUST00000126305 ENSMUSP00000123315 TRANSLATION nonsense_mediated_decay - - 1 163.0 0.0 2.7 0.0 56.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000041343 Ankrd42 ENSMUST00000142971 - NO_TRANSLATION retained_intron ENSMUSG00000041343 Ankrd42 ENSMUST00000207971 - NO_TRANSLATION retained_intron ENSMUSG00000041343 Ankrd42 ENSMUST00000138215 - NO_TRANSLATION retained_intron ENSMUSG00000041343 Ankrd42 ENSMUST00000118157 ENSMUSP00000113767 TRANSLATION protein_coding - CCDS52310.1 1 516.0 0.0 5.14 1.3 135.3 0.0 -4,-7 1.0 2 8.402 PRINCIPAL:2 ENSMUSG00000041343 Ankrd42 ENSMUST00000207131 ENSMUSP00000147057 TRANSLATION protein_coding - - 1 343.0 0.0 4.94 0.0 135.4 0.0 -4,-7 0.02 1 7.4 MINOR ENSMUSG00000043795 Prr33 ENSMUST00000054910 ENSMUSP00000158722 TRANSLATION protein_coding - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 0.0 MINOR ENSMUSG00000043795 Prr33 ENSMUST00000151580 ENSMUSP00000158741 TRANSLATION protein_coding stop - 5 77.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000043795 Prr33 ENSMUST00000238347 ENSMUSP00000158581 TRANSLATION protein_coding - - - 440.0 0.0 0.0 0.4 346.6 0.0 -4,-7 0.7623 8 6.0 PRINCIPAL:1 ENSMUSG00000025507 Pidd1 ENSMUST00000154949 - NO_TRANSLATION retained_intron ENSMUSG00000025507 Pidd1 ENSMUST00000190882 ENSMUSP00000139785 TRANSLATION nonsense_mediated_decay - - 1 244.0 0.0 1.12 0.0 62.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025507 Pidd1 ENSMUST00000128703 ENSMUSP00000139487 TRANSLATION nonsense_mediated_decay - - 1 379.0 2.0 2.47 0.0 71.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025507 Pidd1 ENSMUST00000131980 - NO_TRANSLATION retained_intron ENSMUSG00000025507 Pidd1 ENSMUST00000131621 - NO_TRANSLATION retained_intron ENSMUSG00000025507 Pidd1 ENSMUST00000026580 ENSMUSP00000026580 TRANSLATION protein_coding - CCDS22014.1 5 915.0 2.0 6.07 4.3 246.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025507 Pidd1 ENSMUST00000130878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025507 Pidd1 ENSMUST00000138065 - NO_TRANSLATION retained_intron ENSMUSG00000025507 Pidd1 ENSMUST00000106005 ENSMUSP00000101627 TRANSLATION protein_coding - CCDS22014.1 1 915.0 2.0 6.07 4.3 246.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025507 Pidd1 ENSMUST00000190303 - NO_TRANSLATION retained_intron ENSMUSG00000025507 Pidd1 ENSMUST00000147268 - NO_TRANSLATION retained_intron ENSMUSG00000025507 Pidd1 ENSMUST00000190068 ENSMUSP00000139957 TRANSLATION nonsense_mediated_decay - - 1 244.0 0.0 1.12 0.0 62.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070705 Eid2b ENSMUST00000094651 ENSMUSP00000092235 TRANSLATION protein_coding - CCDS52161.1 - 151.0 0.0 0.8 0.4 0.0 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000044701 Il27 ENSMUST00000058429 ENSMUSP00000054637 TRANSLATION protein_coding - CCDS21835.1 1 234.0 0.0 0.0 0.1 0.0 0.0 4,-1 0.9716 - 0.0 PRINCIPAL:1 ENSMUSG00000047586 Nccrp1 ENSMUST00000057974 ENSMUSP00000055562 TRANSLATION protein_coding - CCDS39862.1 1 291.0 0.0 5.05 0.0 136.1 0.0 -4,-5 0.2794 8 8.0 ALTERNATIVE:2 ENSMUSG00000047586 Nccrp1 ENSMUST00000239002 ENSMUSP00000159104 TRANSLATION protein_coding - - - 266.0 0.0 5.05 1.4 136.1 0.0 -4,-5 0.7709 8 9.0 PRINCIPAL:2 ENSMUSG00000062031 Pgghg ENSMUST00000169736 - NO_TRANSLATION retained_intron ENSMUSG00000062031 Pgghg ENSMUST00000164337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062031 Pgghg ENSMUST00000163094 ENSMUSP00000128478 TRANSLATION nonsense_mediated_decay start - 5 177.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000062031 Pgghg ENSMUST00000079403 ENSMUSP00000078372 TRANSLATION protein_coding - CCDS21992.1 1 690.0 1.0 13.75 3.5 0.0 0.0 -4,-5 1.0 12 7.0 PRINCIPAL:1 ENSMUSG00000062031 Pgghg ENSMUST00000168084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062031 Pgghg ENSMUST00000164580 ENSMUSP00000128214 TRANSLATION protein_coding - - 5 698.0 1.0 13.25 0.1 0.0 0.0 -4,-5 0.1327 12 4.998 MINOR ENSMUSG00000034087 Nlrp4b ENSMUST00000117413 ENSMUSP00000113095 TRANSLATION protein_coding - CCDS20795.1 1 863.0 5.0 6.585 0.1 238.1 0.0 -4,-6 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000034087 Nlrp4b ENSMUST00000211069 ENSMUSP00000148004 TRANSLATION protein_coding start - 3 228.0 0.0 3.9495 0.0 40.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034087 Nlrp4b ENSMUST00000211258 ENSMUSP00000148162 TRANSLATION protein_coding start - 3 155.0 0.0 3.135 0.0 40.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034087 Nlrp4b ENSMUST00000047809 ENSMUSP00000043881 TRANSLATION protein_coding - CCDS20795.1 1 863.0 5.0 6.585 0.1 238.1 0.0 -4,-6 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000034087 Nlrp4b ENSMUST00000132990 ENSMUSP00000115831 TRANSLATION protein_coding start - 1 466.0 1.0 4.48 0.0 40.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095864 Vmn1r77 ENSMUST00000227320 ENSMUSP00000153872 TRANSLATION protein_coding - CCDS52016.1 - 306.0 0.0 1.0 0.4 85.7 11.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095864 Vmn1r77 ENSMUST00000228213 ENSMUSP00000154253 TRANSLATION protein_coding - - - 238.0 0.0 0.0 0.0 83.7 9.0 -4,-7 0.0233 - 5.862 MINOR ENSMUSG00000095864 Vmn1r77 ENSMUST00000164446 ENSMUSP00000130869 TRANSLATION protein_coding - CCDS52016.1 - 306.0 0.0 1.0 0.4 85.7 11.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095864 Vmn1r77 ENSMUST00000226525 ENSMUSP00000154363 TRANSLATION protein_coding - - - 238.0 0.0 0.0 0.0 83.7 9.0 -4,-7 0.0233 - 5.862 MINOR ENSMUSG00000030549 Rhcg ENSMUST00000161084 ENSMUSP00000134005 TRANSLATION protein_coding stop - 2 60.0 0.0 1.5 0.0 0.0 3.0 -4,-6 0.0003 - -2.0 MINOR ENSMUSG00000030549 Rhcg ENSMUST00000032766 ENSMUSP00000032766 TRANSLATION protein_coding - CCDS21383.1 1 498.0 5.0 10.03 0.4 266.1 8.0 -1,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000030549 Rhcg ENSMUST00000172788 ENSMUSP00000134230 TRANSLATION protein_coding start - 5 41.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0033 - -2.0 MINOR ENSMUSG00000030872 Gga2 ENSMUST00000131081 - NO_TRANSLATION retained_intron ENSMUSG00000030872 Gga2 ENSMUST00000138441 - NO_TRANSLATION retained_intron ENSMUSG00000030872 Gga2 ENSMUST00000144779 - NO_TRANSLATION retained_intron ENSMUSG00000030872 Gga2 ENSMUST00000033160 ENSMUSP00000033160 TRANSLATION protein_coding - CCDS40116.1 1 603.0 5.0 10.0 0.0 305.5 0.0 -3,-4 1.0 12 17.0 PRINCIPAL:1 ENSMUSG00000030872 Gga2 ENSMUST00000124566 ENSMUSP00000115581 TRANSLATION nonsense_mediated_decay - CCDS40116.1 2 603.0 5.0 10.0 0.0 305.5 0.0 -3,-4 1.0 12 -2.0 MINOR ENSMUSG00000030872 Gga2 ENSMUST00000145277 - NO_TRANSLATION retained_intron ENSMUSG00000030792 Dkkl1 ENSMUST00000210454 - NO_TRANSLATION retained_intron ENSMUSG00000030792 Dkkl1 ENSMUST00000209466 ENSMUSP00000147489 TRANSLATION protein_coding stop - 3 219.0 0.0 1.8 0.0 0.0 0.0 3,-2 0.194 5 -2.0 MINOR ENSMUSG00000030792 Dkkl1 ENSMUST00000033057 ENSMUSP00000033057 TRANSLATION protein_coding - CCDS21235.1 1 230.0 0.0 1.8 0.3 0.0 0.0 3,-2 1.0 5 6.0 PRINCIPAL:2 ENSMUSG00000030792 Dkkl1 ENSMUST00000210741 ENSMUSP00000147678 TRANSLATION protein_coding - - 2 183.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0573 5 6.0 ALTERNATIVE:2 ENSMUSG00000049643 2310022A10Rik ENSMUST00000190903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049643 2310022A10Rik ENSMUST00000186501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049643 2310022A10Rik ENSMUST00000190656 ENSMUSP00000141195 TRANSLATION protein_coding start - 5 167.0 0.0 0.375 0.0 0.0 0.0 -4,-7 0.0124 1 -2.0 MINOR ENSMUSG00000049643 2310022A10Rik ENSMUST00000187032 ENSMUSP00000139423 TRANSLATION protein_coding - - 1 391.0 0.0 2.125 0.0 0.0 0.0 -4,-1 0.0857 4 6.0 ALTERNATIVE:2 ENSMUSG00000049643 2310022A10Rik ENSMUST00000191126 ENSMUSP00000139696 TRANSLATION protein_coding stop - 5 190.0 0.0 2.125 0.0 0.0 0.0 -4,-5 0.0355 1 -2.0 MINOR ENSMUSG00000049643 2310022A10Rik ENSMUST00000187960 ENSMUSP00000140651 TRANSLATION protein_coding - - 5 397.0 0.0 2.125 1.8 0.0 0.0 -4,0 0.6385 5 7.0 ALTERNATIVE:2 ENSMUSG00000049643 2310022A10Rik ENSMUST00000186826 - NO_TRANSLATION retained_intron ENSMUSG00000049643 2310022A10Rik ENSMUST00000067386 ENSMUSP00000066803 TRANSLATION protein_coding - CCDS21026.1 1 413.0 0.0 2.125 1.8 0.0 0.0 -4,0 1.0 6 7.0 PRINCIPAL:2 ENSMUSG00000030472 Ceacam18 ENSMUST00000032663 ENSMUSP00000032663 TRANSLATION protein_coding - CCDS21177.1 1 376.0 0.0 4.066 0.0 36.9 0.0 1,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000030762 Aqp8 ENSMUST00000098056 ENSMUSP00000095664 TRANSLATION protein_coding - CCDS72038.1 1 261.0 0.0 4.5 6.2 168.1 5.0 -4,-6 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000030762 Aqp8 ENSMUST00000033023 ENSMUSP00000033023 TRANSLATION protein_coding - CCDS85406.1 1 260.0 0.0 4.5 6.2 168.1 5.0 -4,-7 0.9202 - 10.0 ALTERNATIVE:1 ENSMUSG00000030762 Aqp8 ENSMUST00000206106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035686 Thrsp ENSMUST00000206613 - NO_TRANSLATION retained_intron ENSMUSG00000035686 Thrsp ENSMUST00000043077 ENSMUSP00000042988 TRANSLATION protein_coding - CCDS21458.1 1 150.0 0.0 0.2 8.0 178.4 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000003865 Gys1 ENSMUST00000211150 ENSMUSP00000148252 TRANSLATION protein_coding - - 5 674.0 25.0 11.675 0.0 1076.4 0.0 -4,-5 0.0695 20 8.4 MINOR ENSMUSG00000003865 Gys1 ENSMUST00000210715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003865 Gys1 ENSMUST00000209230 - NO_TRANSLATION retained_intron ENSMUSG00000003865 Gys1 ENSMUST00000003964 ENSMUSP00000003964 TRANSLATION protein_coding - CCDS21244.1 1 738.0 28.0 12.475 6.0 1210.9 0.0 -4,-5 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000003865 Gys1 ENSMUST00000210563 - NO_TRANSLATION retained_intron ENSMUSG00000003865 Gys1 ENSMUST00000209640 ENSMUSP00000147424 TRANSLATION protein_coding start - 3 177.0 8.0 3.375 0.0 319.8 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000030682 Cdipt ENSMUST00000206346 ENSMUSP00000146137 TRANSLATION protein_coding - CCDS85418.1 1 170.0 0.0 0.598 0.7 50.8 1.0 -4,-7 0.2742 2 12.0 MINOR ENSMUSG00000030682 Cdipt ENSMUST00000206794 ENSMUSP00000145918 TRANSLATION nonsense_mediated_decay - - 1 115.0 0.0 0.598 0.0 50.8 1.0 -4,-7 0.0353 1 -2.0 MINOR ENSMUSG00000030682 Cdipt ENSMUST00000205830 ENSMUSP00000145787 TRANSLATION protein_coding - - 2 185.0 0.0 0.398 3.3 34.5 3.0 -2,-3 0.0465 5 8.398 MINOR ENSMUSG00000030682 Cdipt ENSMUST00000206450 ENSMUSP00000146256 TRANSLATION protein_coding - - 5 226.0 0.0 0.598 0.0 50.8 1.0 -4,-7 0.0427 2 12.0 MINOR ENSMUSG00000030682 Cdipt ENSMUST00000206780 ENSMUSP00000145841 TRANSLATION protein_coding stop - 5 100.0 0.0 0.2 0.0 0.0 2.0 -1,-3 0.0017 1 -2.0 MINOR ENSMUSG00000030682 Cdipt ENSMUST00000206170 ENSMUSP00000145579 TRANSLATION nonsense_mediated_decay - - 5 169.0 0.0 0.598 0.0 50.8 1.0 -4,-7 0.0361 2 -2.0 MINOR ENSMUSG00000030682 Cdipt ENSMUST00000206964 - NO_TRANSLATION retained_intron ENSMUSG00000030682 Cdipt ENSMUST00000032920 ENSMUSP00000032920 TRANSLATION protein_coding - CCDS21853.1 1 213.0 0.0 0.598 29.2 50.8 4.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000033458 Fan1 ENSMUST00000206329 - NO_TRANSLATION retained_intron ENSMUSG00000033458 Fan1 ENSMUST00000206730 - NO_TRANSLATION retained_intron ENSMUSG00000033458 Fan1 ENSMUST00000163289 ENSMUSP00000130012 TRANSLATION protein_coding - CCDS52265.1 5 1020.0 0.0 10.33 0.0 88.9 0.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000033458 Fan1 ENSMUST00000206778 - NO_TRANSLATION retained_intron ENSMUSG00000109926 Gm45808 ENSMUST00000210701 ENSMUSP00000147942 TRANSLATION protein_coding,RT start/stop - 5 263.0 3.0 5.25 0.0 0.0 0.0 -4,-6 0.6205 - -2.0 PRINCIPAL:1 ENSMUSG00000093980 Or5p68 ENSMUST00000080106 ENSMUSP00000079005 TRANSLATION protein_coding - CCDS21712.1 - 314.0 0.0 1.0 11.4 182.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037463 Fbxo27 ENSMUST00000039998 ENSMUSP00000038432 TRANSLATION protein_coding - CCDS21051.1 1 279.0 0.0 6.0 4.9 272.4 0.0 -4,-7 0.9201 2 9.56 ALTERNATIVE:1 ENSMUSG00000037463 Fbxo27 ENSMUST00000108281 ENSMUSP00000103916 TRANSLATION protein_coding - CCDS52164.1 1 280.0 0.0 6.0 6.0 277.3 0.0 -4,-7 1.0 3 10.0 PRINCIPAL:3 ENSMUSG00000037463 Fbxo27 ENSMUST00000108280 ENSMUSP00000103915 TRANSLATION protein_coding - - 1 156.0 0.0 4.0 1.2 203.7 0.0 -4,-6 0.0338 1 2.078 MINOR ENSMUSG00000037463 Fbxo27 ENSMUST00000151227 ENSMUSP00000116838 TRANSLATION protein_coding stop - 3 73.0 0.0 1.0 0.0 48.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000037463 Fbxo27 ENSMUST00000127368 ENSMUSP00000146553 TRANSLATION protein_coding start - 3 46.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000056394 Lig1 ENSMUST00000138453 - NO_TRANSLATION retained_intron ENSMUSG00000056394 Lig1 ENSMUST00000131294 - NO_TRANSLATION retained_intron ENSMUSG00000056394 Lig1 ENSMUST00000146998 ENSMUSP00000121102 TRANSLATION protein_coding stop - 5 254.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0009 10 -2.0 MINOR ENSMUSG00000056394 Lig1 ENSMUST00000098814 ENSMUSP00000096411 TRANSLATION protein_coding - - 5 916.0 12.0 16.5 6.9 444.9 0.0 -4,-7 1.0 25 20.0 PRINCIPAL:1 ENSMUSG00000056394 Lig1 ENSMUST00000177588 ENSMUSP00000136972 TRANSLATION protein_coding - - 5 916.0 12.0 16.5 6.9 444.9 0.0 -4,-7 1.0 25 20.0 PRINCIPAL:1 ENSMUSG00000056394 Lig1 ENSMUST00000165964 ENSMUSP00000126525 TRANSLATION protein_coding - - 5 916.0 12.0 16.5 6.9 444.9 0.0 -4,-7 1.0 25 20.0 PRINCIPAL:1 ENSMUSG00000045581 Or2d4 ENSMUST00000055923 ENSMUSP00000062956 TRANSLATION protein_coding - CCDS21680.1 5 310.0 0.0 1.0 14.7 178.7 0.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074272 Ceacam1 ENSMUST00000206981 - NO_TRANSLATION retained_intron ENSMUSG00000074272 Ceacam1 ENSMUST00000206483 - NO_TRANSLATION retained_intron ENSMUSG00000074272 Ceacam1 ENSMUST00000206717 - NO_TRANSLATION retained_intron ENSMUSG00000074272 Ceacam1 ENSMUST00000206171 ENSMUSP00000145584 TRANSLATION protein_coding - CCDS39839.1 1 458.0 0.0 4.6 0.4 205.2 3.0 0,-4 0.7435 4 7.61 ALTERNATIVE:2 ENSMUSG00000074272 Ceacam1 ENSMUST00000098666 ENSMUSP00000096263 TRANSLATION protein_coding - CCDS39839.1 1 458.0 0.0 4.6 0.4 205.2 3.0 0,-4 0.7435 4 7.61 ALTERNATIVE:2 ENSMUSG00000074272 Ceacam1 ENSMUST00000098669 ENSMUSP00000096266 TRANSLATION protein_coding - CCDS20984.1 5 521.0 0.0 4.6 0.4 205.2 3.0 0,-4 0.4797 4 7.61 ALTERNATIVE:2 ENSMUSG00000074272 Ceacam1 ENSMUST00000206687 ENSMUSP00000146066 TRANSLATION protein_coding - CCDS85244.1 1 278.0 0.0 2.6 0.0 97.9 3.0 0,-4 0.0455 4 2.408 MINOR ENSMUSG00000074272 Ceacam1 ENSMUST00000206676 ENSMUSP00000145590 TRANSLATION protein_coding - - 1 450.0 0.0 4.795 0.1 205.2 0.0 0,-4 0.7929 4 8.0 PRINCIPAL:4 ENSMUSG00000074272 Ceacam1 ENSMUST00000205308 ENSMUSP00000146156 TRANSLATION protein_coding - - 1 270.0 0.0 2.795 0.0 97.9 0.0 0,-4 0.0 4 2.798 MINOR ENSMUSG00000074272 Ceacam1 ENSMUST00000098668 ENSMUSP00000096265 TRANSLATION protein_coding - CCDS20985.1 1 341.0 0.0 2.6 0.3 97.9 3.0 0,-4 0.0457 4 2.408 MINOR ENSMUSG00000074272 Ceacam1 ENSMUST00000206583 ENSMUSP00000145570 TRANSLATION nonsense_mediated_decay - - 1 236.0 0.0 2.0 0.0 104.7 0.0 0,-4 0.0 1 -2.0 MINOR ENSMUSG00000039018 Mtg1 ENSMUST00000155723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039018 Mtg1 ENSMUST00000150667 - NO_TRANSLATION retained_intron ENSMUSG00000039018 Mtg1 ENSMUST00000211171 ENSMUSP00000147754 TRANSLATION nonsense_mediated_decay start - 5 52.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000039018 Mtg1 ENSMUST00000140579 - NO_TRANSLATION retained_intron ENSMUSG00000039018 Mtg1 ENSMUST00000141070 - NO_TRANSLATION retained_intron ENSMUSG00000039018 Mtg1 ENSMUST00000124253 ENSMUSP00000147668 TRANSLATION protein_coding stop - 5 40.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039018 Mtg1 ENSMUST00000036977 ENSMUSP00000036491 TRANSLATION protein_coding - CCDS52432.1 1 326.0 15.0 9.1 0.4 49.4 0.0 -4,-2 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000047248 C2cd3 ENSMUST00000151573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047248 C2cd3 ENSMUST00000120196 ENSMUSP00000113728 TRANSLATION protein_coding start - 5 899.0 0.0 0.339 0.0 19.9 0.0 -4,-7 0.0833 3 -2.0 MINOR ENSMUSG00000047248 C2cd3 ENSMUST00000185051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047248 C2cd3 ENSMUST00000184753 - NO_TRANSLATION retained_intron ENSMUSG00000047248 C2cd3 ENSMUST00000156559 - NO_TRANSLATION retained_intron ENSMUSG00000047248 C2cd3 ENSMUST00000184657 - NO_TRANSLATION retained_intron ENSMUSG00000047248 C2cd3 ENSMUST00000098259 ENSMUSP00000095859 TRANSLATION protein_coding - - 5 2130.0 0.0 0.339 0.0 44.7 0.0 -4,-5 1.0 9 8.0 ALTERNATIVE:2 ENSMUSG00000047248 C2cd3 ENSMUST00000185084 ENSMUSP00000139071 TRANSLATION nonsense_mediated_decay start - 3 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047248 C2cd3 ENSMUST00000119647 ENSMUSP00000113360 TRANSLATION protein_coding start - 1 1566.0 0.0 0.339 0.0 44.7 0.0 -3,-6 0.4632 6 -2.0 MINOR ENSMUSG00000047248 C2cd3 ENSMUST00000184779 - NO_TRANSLATION retained_intron ENSMUSG00000047248 C2cd3 ENSMUST00000051777 ENSMUSP00000062637 TRANSLATION protein_coding - CCDS57568.1 5 2323.0 0.0 0.339 0.0 44.7 0.0 -4,-5 0.8331 10 8.0 PRINCIPAL:3 ENSMUSG00000047248 C2cd3 ENSMUST00000208753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047248 C2cd3 ENSMUST00000133464 ENSMUSP00000118864 TRANSLATION nonsense_mediated_decay - - 1 250.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000047248 C2cd3 ENSMUST00000208018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000085272 Sbk3 ENSMUST00000133272 ENSMUSP00000120654 TRANSLATION protein_coding - - 5 361.0 0.0 3.05 0.1 102.7 0.0 -4,-5 0.7376 - 8.0 PRINCIPAL:2 ENSMUSG00000085272 Sbk3 ENSMUST00000144863 ENSMUSP00000122507 TRANSLATION protein_coding - CCDS57475.1 1 342.0 0.0 3.0 0.0 102.7 0.0 -4,0 0.3433 - 7.898 ALTERNATIVE:2 ENSMUSG00000096663 Vmn1r103 ENSMUST00000163461 ENSMUSP00000128293 TRANSLATION protein_coding - CCDS52075.1 - 305.0 0.0 0.0 0.4 55.5 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000106715 Tmem265 ENSMUST00000084563 ENSMUSP00000081611 TRANSLATION protein_coding - CCDS80807.1 1 109.0 0.0 0.0 11.5 32.7 3.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000106715 Tmem265 ENSMUST00000190278 ENSMUSP00000144111 TRANSLATION protein_coding - - 3 60.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.002 - 0.0 MINOR ENSMUSG00000039728 Slc6a5 ENSMUST00000107605 ENSMUSP00000103230 TRANSLATION protein_coding - CCDS21308.1 1 791.0 0.0 12.17 0.0 718.9 9.0 -4,-6 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000039728 Slc6a5 ENSMUST00000209172 ENSMUSP00000146430 TRANSLATION nonsense_mediated_decay - - 1 181.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000039728 Slc6a5 ENSMUST00000056442 ENSMUSP00000058699 TRANSLATION protein_coding - CCDS21308.1 1 791.0 0.0 12.17 0.0 718.9 9.0 -4,-6 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000039728 Slc6a5 ENSMUST00000207753 ENSMUSP00000146917 TRANSLATION protein_coding - CCDS21308.1 1 791.0 0.0 12.17 0.0 718.9 9.0 -4,-6 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000070436 Serpinh1 ENSMUST00000208119 ENSMUSP00000146969 TRANSLATION protein_coding - CCDS21480.1 1 417.0 0.0 5.6 7.4 321.7 0.0 4,-1 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000070436 Serpinh1 ENSMUST00000094154 ENSMUSP00000091706 TRANSLATION protein_coding - CCDS21480.1 1 417.0 0.0 5.6 7.4 321.7 0.0 4,-1 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000070436 Serpinh1 ENSMUST00000208749 ENSMUSP00000146515 TRANSLATION protein_coding stop - 5 203.0 0.0 2.6 0.0 123.1 0.0 4,-1 0.0 9 -2.0 MINOR ENSMUSG00000070436 Serpinh1 ENSMUST00000169437 ENSMUSP00000126390 TRANSLATION protein_coding - CCDS21480.1 1 417.0 0.0 5.6 7.4 321.7 0.0 4,-1 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000070436 Serpinh1 ENSMUST00000208292 ENSMUSP00000146373 TRANSLATION protein_coding stop - 3 53.0 0.0 0.6 0.0 0.0 0.0 4,-1 0.0024 1 -2.0 MINOR ENSMUSG00000070436 Serpinh1 ENSMUST00000207849 ENSMUSP00000147064 TRANSLATION protein_coding - CCDS21480.1 1 417.0 0.0 5.6 7.4 321.7 0.0 4,-1 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000070436 Serpinh1 ENSMUST00000207989 ENSMUSP00000146444 TRANSLATION protein_coding stop - 2 115.0 0.0 1.6 0.0 49.2 0.0 4,-1 0.0006 5 -2.0 MINOR ENSMUSG00000045165 AI467606 ENSMUST00000206102 ENSMUSP00000146315 TRANSLATION protein_coding - CCDS21857.1 5 225.0 0.0 0.0 9.4 382.4 1.0 -4,-7 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000045165 AI467606 ENSMUST00000056288 ENSMUSP00000063016 TRANSLATION protein_coding - CCDS21857.1 1 225.0 0.0 0.0 9.4 382.4 1.0 -4,-7 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000030516 Tjp1 ENSMUST00000144961 - NO_TRANSLATION retained_intron ENSMUSG00000030516 Tjp1 ENSMUST00000206228 ENSMUSP00000145910 TRANSLATION protein_coding stop - 5 171.0 0.0 2.5 0.0 61.9 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000030516 Tjp1 ENSMUST00000102592 ENSMUSP00000099652 TRANSLATION protein_coding - CCDS21338.1 1 1745.0 0.0 13.325 4.0 361.1 0.0 -4,-5 0.6681 54 12.068 MINOR ENSMUSG00000030516 Tjp1 ENSMUST00000206612 ENSMUSP00000146149 TRANSLATION nonsense_mediated_decay - - 1 1128.0 0.0 10.575 0.0 256.9 0.0 -4,-5 0.0396 37 -2.0 MINOR ENSMUSG00000030516 Tjp1 ENSMUST00000132036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030516 Tjp1 ENSMUST00000206438 - NO_TRANSLATION retained_intron ENSMUSG00000030516 Tjp1 ENSMUST00000032729 ENSMUSP00000032729 TRANSLATION protein_coding - CCDS52266.1 1 1685.0 0.0 13.7 4.0 380.8 0.0 -4,-5 1.0 53 14.0 PRINCIPAL:1 ENSMUSG00000109060 Gm4513 ENSMUST00000207881 ENSMUSP00000147065 TRANSLATION protein_coding - CCDS85227.1 1 301.0 17.0 1.0 0.0 238.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000032812 Arap1 ENSMUST00000141083 ENSMUSP00000120168 TRANSLATION protein_coding stop - 3 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0585 - -2.0 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000153340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032812 Arap1 ENSMUST00000156017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032812 Arap1 ENSMUST00000084895 ENSMUSP00000081957 TRANSLATION protein_coding - CCDS21510.1 1 1193.0 4.0 8.0265 3.1 434.9 0.0 -4,-6 0.6948 28 10.8 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000107010 ENSMUSP00000102624 TRANSLATION protein_coding - CCDS40041.1 1 1441.0 4.0 8.9265 0.3 472.4 0.0 -4,-6 1.0 32 12.0 PRINCIPAL:4 ENSMUSG00000032812 Arap1 ENSMUST00000084896 ENSMUSP00000081958 TRANSLATION protein_coding - - 1 1452.0 4.0 8.9265 0.3 469.0 0.0 -4,-6 0.7991 32 12.0 ALTERNATIVE:2 ENSMUSG00000032812 Arap1 ENSMUST00000210162 - NO_TRANSLATION retained_intron ENSMUSG00000032812 Arap1 ENSMUST00000124637 - NO_TRANSLATION retained_intron ENSMUSG00000032812 Arap1 ENSMUST00000138628 ENSMUSP00000114197 TRANSLATION protein_coding stop - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0409 - -2.0 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000098243 ENSMUSP00000095844 TRANSLATION protein_coding - CCDS40042.1 1 727.0 0.0 4.4125 0.0 290.6 0.0 -4,-6 0.0618 18 0.8 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000127873 ENSMUSP00000121257 TRANSLATION protein_coding stop - 3 76.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000130016 ENSMUSP00000115850 TRANSLATION protein_coding stop - 2 63.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000148902 ENSMUSP00000123542 TRANSLATION protein_coding stop - 2 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0229 - -2.0 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000137384 ENSMUSP00000118657 TRANSLATION protein_coding stop - 3 54.0 0.0 0.1 0.0 29.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000152082 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032812 Arap1 ENSMUST00000133423 ENSMUSP00000121431 TRANSLATION protein_coding stop - 2 57.0 0.0 0.9 0.0 36.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000125284 - NO_TRANSLATION retained_intron ENSMUSG00000032812 Arap1 ENSMUST00000155754 ENSMUSP00000147974 TRANSLATION protein_coding stop - 3 34.0 0.0 0.3525 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000134143 ENSMUSP00000115107 TRANSLATION protein_coding stop - 3 111.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000032812 Arap1 ENSMUST00000213314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066838 Zfp772 ENSMUST00000074455 ENSMUSP00000074055 TRANSLATION protein_coding - CCDS20785.1 1 416.0 32.0 1.0 0.4 242.0 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000030588 Yif1b ENSMUST00000138128 ENSMUSP00000117224 TRANSLATION protein_coding start/stop - 2 272.0 0.0 0.0 0.0 244.9 3.0 -4,-6 0.0037 4 -2.0 MINOR ENSMUSG00000030588 Yif1b ENSMUST00000108237 ENSMUSP00000103872 TRANSLATION protein_coding - - 5 251.0 0.0 0.0 0.0 197.2 4.0 -4,-2 0.0045 4 0.0 MINOR ENSMUSG00000030588 Yif1b ENSMUST00000108238 ENSMUSP00000103873 TRANSLATION protein_coding - CCDS52171.1 1 308.0 0.0 0.0 9.1 285.6 6.0 -4,-1 1.0 5 5.0 PRINCIPAL:4 ENSMUSG00000030588 Yif1b ENSMUST00000032809 ENSMUSP00000032809 TRANSLATION protein_coding - CCDS21069.1 1 311.0 0.0 0.0 7.1 285.6 6.0 -4,-2 0.8556 5 4.259 ALTERNATIVE:1 ENSMUSG00000030588 Yif1b ENSMUST00000142519 ENSMUSP00000146477 TRANSLATION protein_coding start - 5 315.0 0.0 0.0 0.0 285.6 6.0 -4,-5 0.1069 5 -2.0 MINOR ENSMUSG00000033847 Pla2g4c ENSMUST00000167232 ENSMUSP00000127060 TRANSLATION protein_coding - CCDS52027.1 5 607.0 4.0 2.619 0.0 91.7 0.0 -4,-7 0.4525 11 10.0 ALTERNATIVE:2 ENSMUSG00000033847 Pla2g4c ENSMUST00000108257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033847 Pla2g4c ENSMUST00000108528 ENSMUSP00000104168 TRANSLATION protein_coding - CCDS52027.1 1 607.0 4.0 2.619 0.0 91.7 0.0 -4,-7 0.4525 11 10.0 ALTERNATIVE:2 ENSMUSG00000033847 Pla2g4c ENSMUST00000043612 ENSMUSP00000043672 TRANSLATION protein_coding - CCDS39771.1 1 597.0 4.0 2.619 0.0 91.7 0.0 -4,-5 1.0 11 10.0 PRINCIPAL:2 ENSMUSG00000001794 Capns1 ENSMUST00000001845 ENSMUSP00000001845 TRANSLATION protein_coding - CCDS21082.1 5 268.0 28.0 5.995 4.3 27.4 0.0 -4,-7 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000001794 Capns1 ENSMUST00000126116 ENSMUSP00000117951 TRANSLATION protein_coding - CCDS21082.1 1 268.0 28.0 5.995 4.3 27.4 0.0 -4,-7 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000001794 Capns1 ENSMUST00000207082 - NO_TRANSLATION retained_intron ENSMUSG00000001794 Capns1 ENSMUST00000141851 - NO_TRANSLATION retained_intron ENSMUSG00000001794 Capns1 ENSMUST00000108196 ENSMUSP00000103831 TRANSLATION protein_coding - - 1 200.0 28.0 5.995 1.0 27.4 0.0 -4,-5 0.2241 4 18.0 MINOR ENSMUSG00000001794 Capns1 ENSMUST00000146852 - NO_TRANSLATION retained_intron ENSMUSG00000001794 Capns1 ENSMUST00000148973 - NO_TRANSLATION retained_intron ENSMUSG00000001794 Capns1 ENSMUST00000129761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095619 Vmn1r157 ENSMUST00000178215 ENSMUSP00000137271 TRANSLATION protein_coding - CCDS52120.1 - 297.0 0.0 0.0 0.0 22.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038156 Spon1 ENSMUST00000084696 ENSMUSP00000081746 TRANSLATION protein_coding - - 1 283.0 0.0 5.715 0.0 168.0 0.0 1,-2 0.0013 8 0.0 MINOR ENSMUSG00000038156 Spon1 ENSMUST00000046687 ENSMUSP00000041157 TRANSLATION protein_coding - CCDS21757.1 1 807.0 6.0 12.35 13.6 642.3 0.0 1,-2 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000053367 Eddm13 ENSMUST00000121024 ENSMUSP00000113155 TRANSLATION protein_coding - CCDS51989.1 5 164.0 2.0 0.0 1.0 0.0 0.0 4,-1 0.9702 2 2.0 PRINCIPAL:1 ENSMUSG00000053367 Eddm13 ENSMUST00000155248 ENSMUSP00000116208 TRANSLATION protein_coding start - 5 106.0 2.0 0.0 0.3 0.0 0.0 -4,-6 0.0214 2 -2.0 MINOR ENSMUSG00000053367 Eddm13 ENSMUST00000128903 ENSMUSP00000146981 TRANSLATION nonsense_mediated_decay start - 5 78.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0384 1 -2.0 MINOR ENSMUSG00000089661 Mia ENSMUST00000205990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089661 Mia ENSMUST00000121848 ENSMUSP00000114063 TRANSLATION protein_coding - - 1 131.0 0.0 2.93 7.6 41.1 0.0 4,-1 0.8792 3 8.0 ALTERNATIVE:1 ENSMUSG00000089661 Mia ENSMUST00000127491 - NO_TRANSLATION retained_intron ENSMUSG00000089661 Mia ENSMUST00000071986 ENSMUSP00000071876 TRANSLATION protein_coding - CCDS21013.1 1 130.0 0.0 2.93 7.6 41.1 0.0 4,-1 1.0 3 8.0 PRINCIPAL:4 ENSMUSG00000074261 Erich4 ENSMUST00000098663 ENSMUSP00000096260 TRANSLATION protein_coding - - 1 136.0 0.0 0.6 4.8 187.1 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000074261 Erich4 ENSMUST00000238895 ENSMUSP00000158893 TRANSLATION protein_coding - CCDS20987.1 - 140.0 0.0 0.6 0.1 187.1 0.0 -4,-5 0.3827 2 12.0 MINOR ENSMUSG00000038570 Saxo2 ENSMUST00000156720 ENSMUSP00000159041 TRANSLATION protein_coding - - 1 73.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.1104 1 0.0 ALTERNATIVE:2 ENSMUSG00000038570 Saxo2 ENSMUST00000126478 ENSMUSP00000146351 TRANSLATION protein_coding - - 1 83.0 0.0 0.0 0.0 0.0 0.0 -3,-4 0.016 - 0.0 ALTERNATIVE:2 ENSMUSG00000038570 Saxo2 ENSMUST00000207693 ENSMUSP00000147203 TRANSLATION protein_coding - - 1 74.0 0.0 0.0 0.0 0.0 0.0 -2,-3 0.0367 - 0.0 ALTERNATIVE:2 ENSMUSG00000038570 Saxo2 ENSMUST00000151632 - NO_TRANSLATION retained_intron ENSMUSG00000038570 Saxo2 ENSMUST00000056728 ENSMUSP00000057993 TRANSLATION protein_coding - CCDS21409.1 1 394.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.9348 6 1.0 PRINCIPAL:2 ENSMUSG00000074378 Bsph1 ENSMUST00000098811 ENSMUSP00000096408 TRANSLATION protein_coding - CCDS20832.1 1 133.0 9.0 2.0 4.1 98.2 0.0 1,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000074378 Bsph1 ENSMUST00000204715 ENSMUSP00000144997 TRANSLATION protein_coding - CCDS85218.1 1 123.0 9.0 2.0 0.9 98.2 0.0 2,-2 0.4066 - 18.0 MINOR ENSMUSG00000030911 Zp2 ENSMUST00000207726 ENSMUSP00000146926 TRANSLATION nonsense_mediated_decay - - 1 428.0 0.0 2.65 0.0 0.0 0.0 0,1 0.0008 - -2.0 MINOR ENSMUSG00000030911 Zp2 ENSMUST00000207333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030911 Zp2 ENSMUST00000208122 - NO_TRANSLATION retained_intron ENSMUSG00000030911 Zp2 ENSMUST00000033207 ENSMUSP00000033207 TRANSLATION protein_coding - CCDS21792.1 1 713.0 0.0 6.23 0.0 160.5 0.0 0,1 0.5355 - 8.0 ALTERNATIVE:2 ENSMUSG00000030911 Zp2 ENSMUST00000208874 ENSMUSP00000147097 TRANSLATION protein_coding - - 1 676.0 0.0 6.23 0.0 160.5 0.0 0,1 0.8183 - 8.0 PRINCIPAL:2 ENSMUSG00000039361 Picalm ENSMUST00000207225 ENSMUSP00000146659 TRANSLATION protein_coding - CCDS85338.1 1 597.0 4.0 8.33 7.3 276.1 0.0 -4,-6 0.8727 15 13.836 MINOR ENSMUSG00000039361 Picalm ENSMUST00000207197 - NO_TRANSLATION retained_intron ENSMUSG00000039361 Picalm ENSMUST00000208891 - NO_TRANSLATION retained_intron ENSMUSG00000039361 Picalm ENSMUST00000208684 ENSMUSP00000146408 TRANSLATION protein_coding stop - 3 85.0 0.0 2.25 0.0 80.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000039361 Picalm ENSMUST00000207484 ENSMUSP00000146501 TRANSLATION protein_coding - CCDS52307.1 1 660.0 4.0 8.33 8.3 276.1 0.0 -4,-6 0.805 17 14.127 ALTERNATIVE:1 ENSMUSG00000039361 Picalm ENSMUST00000208742 ENSMUSP00000147016 TRANSLATION protein_coding - CCDS85334.1 1 652.0 4.0 8.33 8.3 276.1 0.0 -4,-6 0.8328 17 14.127 PRINCIPAL:4 ENSMUSG00000039361 Picalm ENSMUST00000208730 ENSMUSP00000146541 TRANSLATION protein_coding - CCDS85337.1 1 605.0 4.0 8.33 11.3 276.1 0.0 -4,-6 1.0 15 15.0 ALTERNATIVE:1 ENSMUSG00000039361 Picalm ENSMUST00000209068 ENSMUSP00000146386 TRANSLATION protein_coding - CCDS85336.1 5 610.0 4.0 8.33 11.3 276.1 0.0 -4,-6 0.9782 15 15.0 ALTERNATIVE:1 ENSMUSG00000039361 Picalm ENSMUST00000208089 ENSMUSP00000150861 TRANSLATION protein_coding start - 5 404.0 0.0 2.25 0.0 47.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000039361 Picalm ENSMUST00000207596 - NO_TRANSLATION retained_intron ENSMUSG00000039361 Picalm ENSMUST00000207949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039361 Picalm ENSMUST00000207084 ENSMUSP00000146509 TRANSLATION protein_coding start - 1 531.0 0.0 5.5 0.0 177.3 0.0 -4,-7 0.0002 12 -2.0 MINOR ENSMUSG00000039361 Picalm ENSMUST00000207106 - NO_TRANSLATION retained_intron ENSMUSG00000039361 Picalm ENSMUST00000208127 - NO_TRANSLATION retained_intron ENSMUSG00000039361 Picalm ENSMUST00000049537 ENSMUSP00000051092 TRANSLATION protein_coding - CCDS85335.1 1 655.0 4.0 8.33 8.3 276.1 0.0 -4,-6 0.8125 17 14.127 ALTERNATIVE:1 ENSMUSG00000055116 Bmal1 ENSMUST00000211547 - NO_TRANSLATION retained_intron ENSMUSG00000055116 Bmal1 ENSMUST00000047321 ENSMUSP00000046235 TRANSLATION protein_coding - CCDS40092.1 1 626.0 0.0 5.65 9.1 177.7 0.0 -4,-5 1.0 8 11.0 PRINCIPAL:4 ENSMUSG00000055116 Bmal1 ENSMUST00000209495 - NO_TRANSLATION retained_intron ENSMUSG00000055116 Bmal1 ENSMUST00000210238 ENSMUSP00000147989 TRANSLATION protein_coding - CCDS40092.1 5 626.0 0.0 5.65 9.1 177.7 0.0 -4,-5 1.0 8 11.0 PRINCIPAL:4 ENSMUSG00000055116 Bmal1 ENSMUST00000210074 ENSMUSP00000147764 TRANSLATION protein_coding - CCDS85390.1 1 613.0 0.0 5.65 2.4 177.7 0.0 -4,-5 0.5576 8 8.519 MINOR ENSMUSG00000055116 Bmal1 ENSMUST00000211770 ENSMUSP00000147823 TRANSLATION protein_coding - - 5 633.0 0.0 5.65 9.1 177.7 0.0 -4,-5 0.7931 8 11.0 ALTERNATIVE:1 ENSMUSG00000004500 Zfp324 ENSMUST00000124387 ENSMUSP00000123956 TRANSLATION nonsense_mediated_decay - - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000004500 Zfp324 ENSMUST00000038701 ENSMUSP00000041944 TRANSLATION protein_coding - CCDS20819.1 1 583.0 36.0 2.56 0.1 264.8 0.0 -4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000004500 Zfp324 ENSMUST00000210619 ENSMUSP00000147860 TRANSLATION protein_coding - - 3 87.0 0.0 1.3 0.0 72.1 0.0 -4,-2 0.0006 - 3.048 MINOR ENSMUSG00000004500 Zfp324 ENSMUST00000128293 ENSMUSP00000124620 TRANSLATION nonsense_mediated_decay - - 1 75.0 0.0 1.0 0.0 75.2 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000095745 Vmn1r243 ENSMUST00000172989 ENSMUSP00000133350 TRANSLATION protein_coding - CCDS71897.1 - 307.0 0.0 0.0 0.4 61.7 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046826 Fam187b ENSMUST00000129773 ENSMUSP00000144533 TRANSLATION protein_coding - - 1 95.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.5694 - 0.0 PRINCIPAL:4 ENSMUSG00000046826 Fam187b ENSMUST00000128384 ENSMUSP00000144424 TRANSLATION protein_coding - - 2 374.0 0.0 0.0 0.0 0.0 1.0 -1,-3 0.1755 - 0.0 ALTERNATIVE:2 ENSMUSG00000046826 Fam187b ENSMUST00000206754 - NO_TRANSLATION retained_intron ENSMUSG00000046826 Fam187b ENSMUST00000058093 ENSMUSP00000057020 TRANSLATION protein_coding - CCDS21120.1 1 358.0 0.0 0.0 0.1 0.0 1.0 4,-1 0.4335 - 0.0 ALTERNATIVE:2 ENSMUSG00000094612 Or5p1 ENSMUST00000214605 ENSMUSP00000150694 TRANSLATION protein_coding - CCDS21711.1 2 310.0 0.0 1.0 12.5 166.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094612 Or5p1 ENSMUST00000209545 ENSMUSP00000148094 TRANSLATION protein_coding - CCDS21711.1 5 310.0 0.0 1.0 12.5 166.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094612 Or5p1 ENSMUST00000053179 ENSMUSP00000061188 TRANSLATION protein_coding - CCDS21711.1 - 310.0 0.0 1.0 12.5 166.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091006 Vmn2r69 ENSMUST00000233336 ENSMUSP00000156451 TRANSLATION protein_coding - - - 553.0 0.0 1.72 0.0 151.0 0.0 -1,-5 0.0018 - 4.866 MINOR ENSMUSG00000091006 Vmn2r69 ENSMUST00000233859 ENSMUSP00000156696 TRANSLATION nonsense_mediated_decay - - - 571.0 0.0 1.96 0.0 149.7 0.0 -1,-5 0.0023 - -2.0 MINOR ENSMUSG00000091006 Vmn2r69 ENSMUST00000171213 ENSMUSP00000132726 TRANSLATION protein_coding - CCDS52291.1 5 850.0 0.0 2.12 0.0 363.4 0.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091006 Vmn2r69 ENSMUST00000207880 ENSMUSP00000156625 TRANSLATION nonsense_mediated_decay - - 5 167.0 0.0 0.32 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000030976 Tex36 ENSMUST00000033275 ENSMUSP00000033275 TRANSLATION protein_coding - CCDS40163.1 1 219.0 0.0 0.0 0.1 213.5 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000036521 Scgb2b2 ENSMUST00000205821 ENSMUSP00000146061 TRANSLATION protein_coding - - 5 46.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 3.036 MINOR ENSMUSG00000036521 Scgb2b2 ENSMUST00000038835 ENSMUSP00000048540 TRANSLATION protein_coding - CCDS21128.1 1 114.0 0.0 2.63 0.0 105.6 0.0 1,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000005447 Pafah1b3 ENSMUST00000148828 - NO_TRANSLATION retained_intron ENSMUSG00000005447 Pafah1b3 ENSMUST00000005583 ENSMUSP00000005583 TRANSLATION protein_coding - CCDS20979.1 1 232.0 5.0 4.83 8.7 60.2 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000005447 Pafah1b3 ENSMUST00000108410 ENSMUSP00000104048 TRANSLATION protein_coding - - 3 180.0 4.0 3.33 0.0 58.9 0.0 -4,-5 0.0032 5 12.868 MINOR ENSMUSG00000005447 Pafah1b3 ENSMUST00000155118 ENSMUSP00000120379 TRANSLATION protein_coding - - 1 157.0 3.0 3.5 0.0 35.3 0.0 -4,-5 0.0 2 9.858 MINOR ENSMUSG00000005447 Pafah1b3 ENSMUST00000148150 ENSMUSP00000121250 TRANSLATION protein_coding stop - 2 143.0 3.0 3.83 0.0 36.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005447 Pafah1b3 ENSMUST00000149634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005447 Pafah1b3 ENSMUST00000140093 - NO_TRANSLATION retained_intron ENSMUSG00000110324 Gm40460 ENSMUST00000211591 ENSMUSP00000147331 TRANSLATION protein_coding - - - 244.0 0.0 0.0 0.0 37.3 0.0 -4,-5 0.7085 - 6.0 PRINCIPAL:1 ENSMUSG00000090967 Vmn2r61 ENSMUST00000166131 ENSMUSP00000129576 TRANSLATION protein_coding - CCDS52216.1 5 865.0 4.0 2.72 0.1 393.2 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000108622 Gm36864 ENSMUST00000223070 ENSMUSP00000152432 TRANSLATION protein_coding - - 5 447.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.5932 - 0.0 PRINCIPAL:2 ENSMUSG00000108622 Gm36864 ENSMUST00000205530 ENSMUSP00000152057 TRANSLATION protein_coding - - 3 109.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0204 - 0.0 ALTERNATIVE:2 ENSMUSG00000108622 Gm36864 ENSMUST00000222162 ENSMUSP00000152586 TRANSLATION nonsense_mediated_decay - - 5 111.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0145 - -2.0 MINOR ENSMUSG00000093871 Vmn1r253 ENSMUST00000172551 ENSMUSP00000133608 TRANSLATION protein_coding - CCDS71907.1 - 307.0 0.0 0.0 0.4 61.7 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054498 Or6f1 ENSMUST00000044256 ENSMUSP00000049454 TRANSLATION protein_coding - CCDS21425.1 - 308.0 0.0 1.0 9.7 179.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054498 Or6f1 ENSMUST00000215841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054498 Or6f1 ENSMUST00000214977 ENSMUSP00000150391 TRANSLATION protein_coding - CCDS21425.1 5 308.0 0.0 1.0 9.7 179.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070814 Zswim9 ENSMUST00000137574 - NO_TRANSLATION retained_intron ENSMUSG00000070814 Zswim9 ENSMUST00000119139 ENSMUSP00000112652 TRANSLATION protein_coding - - 1 849.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.6366 1 0.0 PRINCIPAL:2 ENSMUSG00000070814 Zswim9 ENSMUST00000108532 ENSMUSP00000104172 TRANSLATION protein_coding - - 5 849.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.6366 1 0.0 PRINCIPAL:2 ENSMUSG00000070814 Zswim9 ENSMUST00000211707 - NO_TRANSLATION retained_intron ENSMUSG00000070814 Zswim9 ENSMUST00000140530 - NO_TRANSLATION retained_intron ENSMUSG00000070814 Zswim9 ENSMUST00000135898 - NO_TRANSLATION retained_intron ENSMUSG00000070814 Zswim9 ENSMUST00000119558 ENSMUSP00000112825 TRANSLATION protein_coding - - 5 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0209 - 0.0 ALTERNATIVE:2 ENSMUSG00000070814 Zswim9 ENSMUST00000144470 ENSMUSP00000122300 TRANSLATION protein_coding stop - 2 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0283 - -2.0 MINOR ENSMUSG00000053025 Sv2b ENSMUST00000165175 ENSMUSP00000127245 TRANSLATION protein_coding - CCDS21368.1 1 683.0 0.0 3.355 5.3 145.2 11.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000053025 Sv2b ENSMUST00000206845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053025 Sv2b ENSMUST00000206236 - NO_TRANSLATION retained_intron ENSMUSG00000053025 Sv2b ENSMUST00000206344 ENSMUSP00000146049 TRANSLATION protein_coding - CCDS21368.1 1 683.0 0.0 3.355 5.3 145.2 11.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000053025 Sv2b ENSMUST00000206675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053025 Sv2b ENSMUST00000207001 ENSMUSP00000146277 TRANSLATION nonsense_mediated_decay start - 5 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0115 - -2.0 MINOR ENSMUSG00000053025 Sv2b ENSMUST00000085164 ENSMUSP00000082254 TRANSLATION protein_coding - CCDS21368.1 1 683.0 0.0 3.355 5.3 145.2 11.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000030399 Ckm ENSMUST00000003643 ENSMUSP00000003643 TRANSLATION protein_coding - - 5 312.0 23.0 6.0 8.3 309.6 0.0 -4,-5 0.1147 22 12.296 MINOR ENSMUSG00000030399 Ckm ENSMUST00000208079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030399 Ckm ENSMUST00000208710 ENSMUSP00000146972 TRANSLATION protein_coding - CCDS20902.1 1 381.0 23.0 7.0 36.9 384.9 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000030657 Xylt1 ENSMUST00000160035 - NO_TRANSLATION retained_intron ENSMUSG00000030657 Xylt1 ENSMUST00000161889 - NO_TRANSLATION retained_intron ENSMUSG00000030657 Xylt1 ENSMUST00000032892 ENSMUSP00000032892 TRANSLATION protein_coding - CCDS40101.1 1 953.0 0.0 9.25 2.6 401.7 0.0 -2,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000025481 Urah ENSMUST00000185612 ENSMUSP00000140559 TRANSLATION protein_coding - CCDS21986.1 3 118.0 0.0 3.245 15.1 132.4 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000025481 Urah ENSMUST00000209978 ENSMUSP00000147888 TRANSLATION protein_coding start - 3 153.0 0.0 2.462 0.0 74.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025481 Urah ENSMUST00000127986 - NO_TRANSLATION retained_intron ENSMUSG00000025481 Urah ENSMUST00000106050 ENSMUSP00000101665 TRANSLATION protein_coding - CCDS85453.1 2 141.0 0.0 3.245 0.0 132.4 0.0 -4,-1 0.1693 4 12.0 MINOR ENSMUSG00000025481 Urah ENSMUST00000026554 ENSMUSP00000026554 TRANSLATION protein_coding - CCDS21986.1 1 118.0 0.0 3.245 15.1 132.4 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000025481 Urah ENSMUST00000211372 ENSMUSP00000147522 TRANSLATION protein_coding - CCDS21986.1 2 118.0 0.0 3.245 15.1 132.4 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000025481 Urah ENSMUST00000210916 ENSMUSP00000147435 TRANSLATION protein_coding start - 5 104.0 0.0 2.75 0.0 111.1 0.0 -4,-5 0.0036 3 -2.0 MINOR ENSMUSG00000030534 Vps33b ENSMUST00000128254 - NO_TRANSLATION retained_intron ENSMUSG00000030534 Vps33b ENSMUST00000135053 ENSMUSP00000138472 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030534 Vps33b ENSMUST00000032749 ENSMUSP00000032749 TRANSLATION protein_coding - CCDS39997.1 1 617.0 0.0 8.375 17.2 332.1 1.0 -4,-5 1.0 25 16.0 PRINCIPAL:1 ENSMUSG00000030534 Vps33b ENSMUST00000145594 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030534 Vps33b ENSMUST00000150585 ENSMUSP00000138224 TRANSLATION nonsense_mediated_decay - - 5 143.0 0.0 2.3 0.0 33.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000030534 Vps33b ENSMUST00000135470 - NO_TRANSLATION retained_intron ENSMUSG00000030534 Vps33b ENSMUST00000205864 ENSMUSP00000146021 TRANSLATION protein_coding start - 3 104.0 0.0 0.97 0.0 51.0 1.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000030770 Parva ENSMUST00000033030 ENSMUSP00000033030 TRANSLATION protein_coding - CCDS40091.1 1 372.0 0.0 4.264 15.6 121.9 0.0 -4,-6 1.0 10 14.644 MINOR ENSMUSG00000030770 Parva ENSMUST00000126047 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030770 Parva ENSMUST00000139720 ENSMUSP00000118587 TRANSLATION nonsense_mediated_decay - - 1 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030770 Parva ENSMUST00000106640 ENSMUSP00000102251 TRANSLATION protein_coding - - 1 336.0 0.0 4.264 23.1 121.9 0.0 -4,-5 0.9923 10 16.0 PRINCIPAL:1 ENSMUSG00000030770 Parva ENSMUST00000106643 ENSMUSP00000102254 TRANSLATION protein_coding - CCDS40091.1 1 372.0 0.0 4.264 15.6 121.9 0.0 -4,-6 1.0 10 14.644 MINOR ENSMUSG00000025482 Odf3 ENSMUST00000106049 ENSMUSP00000101664 TRANSLATION protein_coding - - 5 280.0 0.0 1.6 0.0 62.1 0.0 -4,-7 0.0425 9 12.0 MINOR ENSMUSG00000025482 Odf3 ENSMUST00000135845 - NO_TRANSLATION retained_intron ENSMUSG00000025482 Odf3 ENSMUST00000026555 ENSMUSP00000026555 TRANSLATION protein_coding - CCDS40177.1 1 254.0 0.0 1.6 16.3 62.1 0.0 -4,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000070816 Vmn1r86 ENSMUST00000227700 ENSMUSP00000154464 TRANSLATION protein_coding - - - 266.0 0.0 0.0 0.0 104.2 3.0 -4,-5 0.0921 - 0.0 MINOR ENSMUSG00000070816 Vmn1r86 ENSMUST00000094828 ENSMUSP00000092423 TRANSLATION protein_coding - CCDS52025.1 - 316.0 0.0 0.0 1.3 103.1 4.0 -2,-5 0.9415 - 3.0 PRINCIPAL:1 ENSMUSG00000070816 Vmn1r86 ENSMUST00000226604 ENSMUSP00000154276 TRANSLATION protein_coding - CCDS52025.1 - 316.0 0.0 0.0 1.3 103.1 4.0 -2,-5 0.9415 - 3.0 PRINCIPAL:1 ENSMUSG00000070816 Vmn1r86 ENSMUST00000227220 ENSMUSP00000154549 TRANSLATION protein_coding - CCDS52025.1 - 316.0 0.0 0.0 1.3 103.1 4.0 -2,-5 0.9415 - 3.0 PRINCIPAL:1 ENSMUSG00000094385 Vmn1r123 ENSMUST00000166948 ENSMUSP00000125823 TRANSLATION protein_coding - CCDS52091.1 - 307.0 0.0 0.0 0.4 58.8 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095837 Vmn1r246 ENSMUST00000174364 ENSMUSP00000133598 TRANSLATION protein_coding - CCDS71900.1 - 306.0 0.0 0.0 0.4 57.9 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000092118 Fancf ENSMUST00000169357 ENSMUSP00000125812 TRANSLATION protein_coding - CCDS52261.1 - 343.0 0.0 0.25 0.4 343.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030954 Gp2 ENSMUST00000207887 ENSMUSP00000146487 TRANSLATION protein_coding - - 1 553.0 0.0 4.2 0.0 172.5 0.0 1,-2 0.0653 11 5.04 MINOR ENSMUSG00000030954 Gp2 ENSMUST00000239424 ENSMUSP00000159355 TRANSLATION protein_coding - CCDS21779.1 - 534.0 0.0 4.68 0.4 176.6 1.0 1,-3 0.8364 12 6.0 PRINCIPAL:4 ENSMUSG00000030954 Gp2 ENSMUST00000033255 ENSMUSP00000033255 TRANSLATION protein_coding - - 1 531.0 0.0 4.68 0.4 176.6 1.0 1,-2 0.8202 12 6.0 ALTERNATIVE:2 ENSMUSG00000025813 Homer2 ENSMUST00000207039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025813 Homer2 ENSMUST00000208107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025813 Homer2 ENSMUST00000207289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025813 Homer2 ENSMUST00000208937 ENSMUSP00000146521 TRANSLATION protein_coding stop - 3 179.0 3.0 3.3 0.0 36.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000025813 Homer2 ENSMUST00000207983 ENSMUSP00000146787 TRANSLATION protein_coding - CCDS40009.1 1 354.0 8.0 6.394 16.2 118.2 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000025813 Homer2 ENSMUST00000026922 ENSMUSP00000026922 TRANSLATION protein_coding - CCDS85329.1 1 343.0 8.0 6.394 6.9 118.2 0.0 -4,-6 0.7793 9 19.552 MINOR ENSMUSG00000025813 Homer2 ENSMUST00000098326 ENSMUSP00000095931 TRANSLATION protein_coding - CCDS52284.1 5 290.0 3.0 5.064 8.6 36.1 0.0 -4,-7 0.2819 6 8.666 MINOR ENSMUSG00000025813 Homer2 ENSMUST00000207991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025813 Homer2 ENSMUST00000207371 ENSMUSP00000147030 TRANSLATION nonsense_mediated_decay - - 1 252.0 3.0 2.8 0.0 36.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000057093 Zfp607b ENSMUST00000120004 ENSMUSP00000112494 TRANSLATION protein_coding - CCDS21029.1 1 648.0 68.0 1.0 0.0 375.1 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000057093 Zfp607b ENSMUST00000124397 - NO_TRANSLATION retained_intron ENSMUSG00000057093 Zfp607b ENSMUST00000076421 ENSMUSP00000075755 TRANSLATION protein_coding - CCDS21029.1 5 648.0 68.0 1.0 0.0 375.1 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000057093 Zfp607b ENSMUST00000127200 - NO_TRANSLATION retained_intron ENSMUSG00000052212 Cd177 ENSMUST00000206160 - NO_TRANSLATION retained_intron ENSMUSG00000052212 Cd177 ENSMUST00000063956 ENSMUSP00000064934 TRANSLATION protein_coding - CCDS20962.1 1 817.0 0.0 8.4 0.1 153.9 0.0 3,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000030385 2900092C05Rik ENSMUST00000032541 ENSMUSP00000032541 TRANSLATION protein_coding - CCDS20811.1 1 184.0 0.0 1.6 0.0 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048620 Or6z3 ENSMUST00000056120 ENSMUSP00000056956 TRANSLATION protein_coding - CCDS20777.1 - 314.0 0.0 1.0 8.3 176.1 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048620 Or6z3 ENSMUST00000214301 ENSMUSP00000150162 TRANSLATION protein_coding - CCDS20777.1 5 314.0 0.0 1.0 8.3 176.1 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030887 Pdzd9 ENSMUST00000208635 ENSMUSP00000146476 TRANSLATION protein_coding - - 1 83.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0024 - 2.892 MINOR ENSMUSG00000030887 Pdzd9 ENSMUST00000033178 ENSMUSP00000033178 TRANSLATION protein_coding - CCDS40110.1 1 266.0 0.0 2.76 4.3 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000030887 Pdzd9 ENSMUST00000127845 ENSMUSP00000147114 TRANSLATION protein_coding - - 1 76.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0024 - 2.892 MINOR ENSMUSG00000033676 Gabrb3 ENSMUST00000196198 ENSMUSP00000143353 TRANSLATION protein_coding - CCDS21323.1 1 473.0 0.0 7.5 5.4 326.1 3.0 3,-2 0.6559 4 12.68 MINOR ENSMUSG00000033676 Gabrb3 ENSMUST00000156375 - NO_TRANSLATION retained_intron ENSMUSG00000033676 Gabrb3 ENSMUST00000085240 ENSMUSP00000082337 TRANSLATION protein_coding - - 5 495.0 0.0 7.5 2.0 326.1 3.0 4,-1 0.2932 4 12.156 MINOR ENSMUSG00000033676 Gabrb3 ENSMUST00000138350 ENSMUSP00000118835 TRANSLATION protein_coding start/stop - 3 193.0 0.0 2.25 0.0 91.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033676 Gabrb3 ENSMUST00000039697 ENSMUSP00000038051 TRANSLATION protein_coding - CCDS21324.1 1 473.0 0.0 7.5 26.9 326.1 3.0 2,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000033676 Gabrb3 ENSMUST00000136033 - NO_TRANSLATION retained_intron ENSMUSG00000006205 Htra1 ENSMUST00000140741 - NO_TRANSLATION retained_intron ENSMUSG00000006205 Htra1 ENSMUST00000006367 ENSMUSP00000006367 TRANSLATION protein_coding - CCDS21908.1 1 480.0 7.0 7.33 0.1 226.9 0.0 3,-2 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000006205 Htra1 ENSMUST00000153290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006205 Htra1 ENSMUST00000150717 - NO_TRANSLATION retained_intron ENSMUSG00000006205 Htra1 ENSMUST00000150905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040136 Abcc8 ENSMUST00000209432 ENSMUSP00000147431 TRANSLATION protein_coding start - 3 73.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040136 Abcc8 ENSMUST00000210637 - NO_TRANSLATION retained_intron ENSMUSG00000040136 Abcc8 ENSMUST00000033123 ENSMUSP00000033123 TRANSLATION protein_coding - CCDS21275.1 1 1588.0 25.0 31.9675 8.0 451.3 19.0 -4,-7 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000040136 Abcc8 ENSMUST00000210770 ENSMUSP00000147925 TRANSLATION protein_coding start - 3 123.0 2.0 3.66 0.0 34.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000040136 Abcc8 ENSMUST00000210986 - NO_TRANSLATION retained_intron ENSMUSG00000040136 Abcc8 ENSMUST00000210110 ENSMUSP00000147479 TRANSLATION protein_coding start - 5 158.0 9.0 2.8225 0.0 32.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040136 Abcc8 ENSMUST00000210655 ENSMUSP00000148169 TRANSLATION protein_coding start - 1 910.0 25.0 19.9725 0.0 322.3 10.0 -4,-6 0.01 11 -2.0 MINOR ENSMUSG00000040136 Abcc8 ENSMUST00000210511 ENSMUSP00000148198 TRANSLATION nonsense_mediated_decay - - 3 100.0 0.0 2.0 0.0 0.0 3.0 -4,-7 0.0373 - -2.0 MINOR ENSMUSG00000051403 Ppp1r37 ENSMUST00000058444 ENSMUSP00000060233 TRANSLATION protein_coding - CCDS20906.1 1 712.0 0.0 8.7 0.1 44.3 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000051403 Ppp1r37 ENSMUST00000208678 - NO_TRANSLATION retained_intron ENSMUSG00000051403 Ppp1r37 ENSMUST00000209190 - NO_TRANSLATION retained_intron ENSMUSG00000055629 B4galnt4 ENSMUST00000209546 - NO_TRANSLATION retained_intron ENSMUSG00000055629 B4galnt4 ENSMUST00000211455 - NO_TRANSLATION retained_intron ENSMUSG00000055629 B4galnt4 ENSMUST00000210203 - NO_TRANSLATION retained_intron ENSMUSG00000055629 B4galnt4 ENSMUST00000210517 ENSMUSP00000147364 TRANSLATION protein_coding start - 2 95.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000055629 B4galnt4 ENSMUST00000048002 ENSMUSP00000039758 TRANSLATION protein_coding - CCDS21998.1 1 1034.0 3.0 0.0 0.4 149.5 0.0 1,-3 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000060565 Gm5591 ENSMUST00000079759 ENSMUSP00000078695 TRANSLATION protein_coding - CCDS52205.1 1 855.0 0.0 0.0 0.0 190.3 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046541 Zfp526 ENSMUST00000055604 ENSMUSP00000053567 TRANSLATION protein_coding - CCDS20975.1 1 675.0 48.0 0.2 0.1 128.0 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000078817 Nlrp12 ENSMUST00000108653 ENSMUSP00000104293 TRANSLATION protein_coding - CCDS51963.1 5 1054.0 8.0 6.825 3.1 379.3 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000078817 Nlrp12 ENSMUST00000205233 - NO_TRANSLATION retained_intron ENSMUSG00000033585 Ndn ENSMUST00000038775 ENSMUSP00000045369 TRANSLATION protein_coding - CCDS21326.1 - 325.0 0.0 0.4 8.0 0.0 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000038371 Sbf2 ENSMUST00000165449 - NO_TRANSLATION retained_intron ENSMUSG00000038371 Sbf2 ENSMUST00000167880 - NO_TRANSLATION retained_intron ENSMUSG00000038371 Sbf2 ENSMUST00000164525 ENSMUSP00000128340 TRANSLATION protein_coding start/stop - 5 245.0 0.0 1.1 0.0 63.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038371 Sbf2 ENSMUST00000211732 - NO_TRANSLATION retained_intron ENSMUSG00000038371 Sbf2 ENSMUST00000171218 ENSMUSP00000129805 TRANSLATION protein_coding - - 1 408.0 0.0 4.22 0.0 260.4 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000038371 Sbf2 ENSMUST00000166885 ENSMUSP00000130476 TRANSLATION protein_coding start/stop - 5 198.0 0.0 1.84 0.0 152.9 0.0 -3,-4 0.0 2 -2.0 MINOR ENSMUSG00000038371 Sbf2 ENSMUST00000165992 - NO_TRANSLATION retained_intron ENSMUSG00000038371 Sbf2 ENSMUST00000169740 - NO_TRANSLATION retained_intron ENSMUSG00000038371 Sbf2 ENSMUST00000171378 - NO_TRANSLATION retained_intron ENSMUSG00000038371 Sbf2 ENSMUST00000164599 ENSMUSP00000131927 TRANSLATION protein_coding start/stop - 5 339.0 0.0 2.0 0.0 113.2 0.0 -4,-2 0.0006 6 -2.0 MINOR ENSMUSG00000038371 Sbf2 ENSMUST00000166020 ENSMUSP00000126217 TRANSLATION protein_coding - - 5 1826.0 0.0 10.275 0.1 899.7 0.0 -4,-5 0.1483 26 5.928 MINOR ENSMUSG00000038371 Sbf2 ENSMUST00000033058 ENSMUSP00000033058 TRANSLATION protein_coding - CCDS52361.1 5 1872.0 0.0 11.1 1.9 971.9 0.0 -4,-5 0.6053 26 12.153 MINOR ENSMUSG00000038371 Sbf2 ENSMUST00000167652 ENSMUSP00000127105 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.04 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038371 Sbf2 ENSMUST00000164759 ENSMUSP00000132072 TRANSLATION protein_coding - - 5 1847.0 0.0 11.1 12.1 973.4 0.0 -4,-5 1.0 26 15.0 PRINCIPAL:1 ENSMUSG00000038371 Sbf2 ENSMUST00000164559 ENSMUSP00000128265 TRANSLATION protein_coding start/stop - 5 177.0 0.0 0.765 0.0 40.1 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000043262 Uevld ENSMUST00000208308 ENSMUSP00000146385 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.9 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043262 Uevld ENSMUST00000207738 - NO_TRANSLATION retained_intron ENSMUSG00000043262 Uevld ENSMUST00000210227 ENSMUSP00000147932 TRANSLATION nonsense_mediated_decay - - 5 73.0 0.0 1.65 0.0 37.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000043262 Uevld ENSMUST00000094398 ENSMUSP00000091964 TRANSLATION protein_coding - CCDS39965.1 1 471.0 20.0 10.76 10.8 249.9 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000043262 Uevld ENSMUST00000207986 ENSMUSP00000146930 TRANSLATION nonsense_mediated_decay - - 1 250.0 9.0 5.246 2.1 170.2 0.0 -4,-5 0.0416 4 -2.0 MINOR ENSMUSG00000043262 Uevld ENSMUST00000208388 - NO_TRANSLATION retained_intron ENSMUSG00000036560 Lgi4 ENSMUST00000039775 ENSMUSP00000041579 TRANSLATION protein_coding - CCDS21124.1 1 537.0 0.0 7.96 1.2 103.7 0.0 3,-2 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000036560 Lgi4 ENSMUST00000169785 ENSMUSP00000145660 TRANSLATION nonsense_mediated_decay start - 3 71.0 0.0 2.41 0.0 46.0 0.0 -2,-3 0.0 - -2.0 MINOR ENSMUSG00000036560 Lgi4 ENSMUST00000172001 ENSMUSP00000125865 TRANSLATION protein_coding start - 3 90.0 0.0 1.12 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000036560 Lgi4 ENSMUST00000164725 ENSMUSP00000146008 TRANSLATION nonsense_mediated_decay start - 3 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073896 Or2d36 ENSMUST00000098137 ENSMUSP00000095740 TRANSLATION protein_coding - CCDS21687.1 - 314.0 0.0 2.4 9.7 192.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073896 Or2d36 ENSMUST00000210474 ENSMUSP00000147429 TRANSLATION protein_coding stop - 3 169.0 0.0 1.4 0.0 96.7 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000073896 Or2d36 ENSMUST00000214819 ENSMUSP00000149362 TRANSLATION protein_coding - CCDS21687.1 5 314.0 0.0 2.4 9.7 192.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073896 Or2d36 ENSMUST00000213367 ENSMUSP00000150131 TRANSLATION protein_coding - CCDS21687.1 5 314.0 0.0 2.4 9.7 192.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073896 Or2d36 ENSMUST00000215284 ENSMUSP00000150710 TRANSLATION protein_coding - CCDS21687.1 5 314.0 0.0 2.4 9.7 192.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073896 Or2d36 ENSMUST00000216871 ENSMUSP00000150175 TRANSLATION protein_coding - CCDS21687.1 5 314.0 0.0 2.4 9.7 192.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073896 Or2d36 ENSMUST00000209942 ENSMUSP00000147403 TRANSLATION protein_coding stop - 5 18.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030651 Art2b ENSMUST00000063920 ENSMUSP00000065658 TRANSLATION protein_coding - CCDS21512.1 1 289.0 16.0 1.12 0.0 282.3 0.0 2,-3 1.0 2 14.0 PRINCIPAL:2 ENSMUSG00000030651 Art2b ENSMUST00000209526 ENSMUSP00000147267 TRANSLATION protein_coding - - 5 286.0 16.0 1.12 0.0 282.3 0.0 2,-3 0.3269 2 14.0 ALTERNATIVE:2 ENSMUSG00000038797 Zscan2 ENSMUST00000155128 ENSMUSP00000117886 TRANSLATION protein_coding stop - 1 188.0 0.0 0.6 0.0 73.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038797 Zscan2 ENSMUST00000147125 ENSMUSP00000121143 TRANSLATION protein_coding stop - 1 452.0 33.0 1.92 0.0 295.7 0.0 -4,-6 0.0009 3 -2.0 MINOR ENSMUSG00000038797 Zscan2 ENSMUST00000132163 ENSMUSP00000118774 TRANSLATION protein_coding stop - 3 145.0 0.0 0.6 0.0 73.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038797 Zscan2 ENSMUST00000044115 ENSMUSP00000042321 TRANSLATION protein_coding - CCDS21399.1 1 614.0 56.0 2.92 7.6 436.8 0.0 -4,-6 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000038797 Zscan2 ENSMUST00000205361 ENSMUSP00000146233 TRANSLATION protein_coding stop - 5 69.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000073975 Or51r1 ENSMUST00000216524 ENSMUSP00000149536 TRANSLATION protein_coding - CCDS21535.1 5 316.0 0.0 1.0 8.2 337.3 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073975 Or51r1 ENSMUST00000098225 ENSMUSP00000095828 TRANSLATION protein_coding - CCDS21535.1 - 316.0 0.0 1.0 8.2 337.3 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057454 Lypd3 ENSMUST00000080718 ENSMUSP00000079543 TRANSLATION protein_coding - CCDS20958.1 1 363.0 0.0 2.63 0.0 75.5 0.0 3,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000055809 Dnaaf3 ENSMUST00000094897 ENSMUSP00000092498 TRANSLATION protein_coding - CCDS20737.1 1 586.0 0.0 0.0 0.1 421.8 0.0 -4,-7 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000080751 Or51k7 ENSMUST00000119267 ENSMUSP00000147597 TRANSLATION protein_coding_LoF stop - - 318.0 0.0 1.0 0.0 443.9 0.0 -4,-5 0.8157 - -2.0 PRINCIPAL:1 ENSMUSG00000050855 Zfp940 ENSMUST00000145098 - NO_TRANSLATION retained_intron ENSMUSG00000050855 Zfp940 ENSMUST00000128205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050855 Zfp940 ENSMUST00000085792 ENSMUSP00000082947 TRANSLATION protein_coding - CCDS39873.1 1 566.0 40.0 1.64 0.1 271.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000050855 Zfp940 ENSMUST00000108223 ENSMUSP00000103858 TRANSLATION protein_coding - - 1 128.0 0.0 1.0 0.0 84.5 0.0 -4,-5 0.0 - 3.66 MINOR ENSMUSG00000046185 Zfp84 ENSMUST00000032802 ENSMUSP00000032802 TRANSLATION protein_coding - CCDS21074.1 1 559.0 44.0 1.0 0.1 266.8 0.0 -4,-7 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000034951 Cog7 ENSMUST00000148634 - NO_TRANSLATION retained_intron ENSMUSG00000034951 Cog7 ENSMUST00000057576 ENSMUSP00000058990 TRANSLATION protein_coding - CCDS21805.1 1 770.0 0.0 0.0 27.5 1158.4 0.0 -4,-5 1.0 22 10.0 PRINCIPAL:1 ENSMUSG00000034951 Cog7 ENSMUST00000205438 ENSMUSP00000146193 TRANSLATION protein_coding - - 1 721.0 0.0 0.0 0.0 1070.7 0.0 -4,-5 0.0603 20 0.738 MINOR ENSMUSG00000034951 Cog7 ENSMUST00000206817 - NO_TRANSLATION retained_intron ENSMUSG00000066272 Or51a25 ENSMUST00000084816 ENSMUSP00000095820 TRANSLATION protein_coding - CCDS21545.1 - 318.0 0.0 1.0 7.9 390.9 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000066272 Or51a25 ENSMUST00000215657 ENSMUSP00000151100 TRANSLATION protein_coding - CCDS21545.1 5 318.0 0.0 1.0 7.9 390.9 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000008373 Prpf31 ENSMUST00000008517 ENSMUSP00000008517 TRANSLATION protein_coding - CCDS39729.1 1 499.0 0.0 10.93 12.3 432.2 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000008373 Prpf31 ENSMUST00000179769 ENSMUSP00000136031 TRANSLATION protein_coding - CCDS51965.1 1 493.0 0.0 10.6 3.3 419.3 0.0 -4,-5 0.3349 12 11.178 MINOR ENSMUSG00000008373 Prpf31 ENSMUST00000108636 ENSMUSP00000104276 TRANSLATION protein_coding - CCDS51965.1 5 493.0 0.0 10.6 3.3 419.3 0.0 -4,-5 0.3349 12 11.178 MINOR ENSMUSG00000008373 Prpf31 ENSMUST00000125782 ENSMUSP00000146017 TRANSLATION nonsense_mediated_decay - - 2 65.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008373 Prpf31 ENSMUST00000134047 - NO_TRANSLATION retained_intron ENSMUSG00000008373 Prpf31 ENSMUST00000143231 - NO_TRANSLATION retained_intron ENSMUSG00000109378 Gm49396 ENSMUST00000163994 - NO_TRANSLATION retained_intron ENSMUSG00000109378 Gm49396 ENSMUST00000108161 ENSMUSP00000103796 TRANSLATION nonsense_mediated_decay,RT - - 2 146.0 4.0 3.11 0.0 30.3 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000109378 Gm49396 ENSMUST00000167042 ENSMUSP00000128886 TRANSLATION nonsense_mediated_decay,RT - CCDS21100.1 2 220.0 4.0 5.11 8.0 86.0 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000109378 Gm49396 ENSMUST00000171912 ENSMUSP00000130983 TRANSLATION nonsense_mediated_decay,RT - CCDS21100.1 2 220.0 4.0 5.11 8.0 86.0 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000095201 Vmn1r91 ENSMUST00000165330 ENSMUSP00000129283 TRANSLATION protein_coding - CCDS52066.1 - 307.0 0.0 0.0 0.4 58.5 0.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048677 Tpcn2 ENSMUST00000208281 - NO_TRANSLATION retained_intron ENSMUSG00000048677 Tpcn2 ENSMUST00000058022 ENSMUSP00000061308 TRANSLATION protein_coding - CCDS40203.1 1 731.0 0.0 15.4675 0.4 176.2 14.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000048677 Tpcn2 ENSMUST00000209047 ENSMUSP00000147224 TRANSLATION nonsense_mediated_decay - - 1 479.0 0.0 10.55 0.0 81.0 9.0 -4,-5 0.0035 1 -2.0 MINOR ENSMUSG00000048677 Tpcn2 ENSMUST00000208841 ENSMUSP00000146538 TRANSLATION nonsense_mediated_decay - - 1 533.0 0.0 11.55 0.0 107.9 11.0 -4,-5 0.0046 1 -2.0 MINOR ENSMUSG00000048677 Tpcn2 ENSMUST00000209156 ENSMUSP00000146952 TRANSLATION nonsense_mediated_decay - - 5 132.0 0.0 2.25 0.0 0.0 4.0 -4,-5 0.0038 - -2.0 MINOR ENSMUSG00000048677 Tpcn2 ENSMUST00000208867 - NO_TRANSLATION retained_intron ENSMUSG00000048677 Tpcn2 ENSMUST00000208148 ENSMUSP00000146736 TRANSLATION nonsense_mediated_decay start - 5 503.0 0.0 12.05 0.0 108.6 12.0 -4,-6 0.0046 1 -2.0 MINOR ENSMUSG00000048677 Tpcn2 ENSMUST00000208328 ENSMUSP00000147178 TRANSLATION nonsense_mediated_decay - - 5 490.0 0.0 10.55 0.0 81.0 9.0 -4,-5 0.0035 1 -2.0 MINOR ENSMUSG00000051504 Siglech ENSMUST00000154933 ENSMUSP00000122697 TRANSLATION nonsense_mediated_decay - - 1 47.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0026 - -2.0 MINOR ENSMUSG00000051504 Siglech ENSMUST00000094360 ENSMUSP00000091920 TRANSLATION protein_coding - CCDS80731.1 1 293.0 0.0 3.33 0.0 35.2 1.0 3,-2 0.4822 - 5.802 ALTERNATIVE:2 ENSMUSG00000051504 Siglech ENSMUST00000165045 ENSMUSP00000130632 TRANSLATION protein_coding - - 1 332.0 0.0 3.43 0.0 35.2 0.0 3,-2 0.8255 - 6.0 PRINCIPAL:2 ENSMUSG00000051504 Siglech ENSMUST00000060416 ENSMUSP00000058875 TRANSLATION protein_coding - CCDS21313.2 1 309.0 0.0 3.43 0.0 35.2 1.0 3,-2 0.5445 - 6.0 ALTERNATIVE:2 ENSMUSG00000051504 Siglech ENSMUST00000171077 ENSMUSP00000130943 TRANSLATION protein_coding - CCDS21313.2 5 309.0 0.0 3.43 0.0 35.2 1.0 3,-2 0.5445 - 6.0 ALTERNATIVE:2 ENSMUSG00000051504 Siglech ENSMUST00000121492 ENSMUSP00000113665 TRANSLATION protein_coding - CCDS80732.1 1 216.0 0.0 2.43 0.0 35.2 1.0 3,-2 0.2648 - 4.002 MINOR ENSMUSG00000051504 Siglech ENSMUST00000172988 ENSMUSP00000134017 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0026 - -2.0 MINOR ENSMUSG00000051504 Siglech ENSMUST00000173835 ENSMUSP00000134721 TRANSLATION protein_coding - CCDS80732.1 1 216.0 0.0 2.43 0.0 35.2 1.0 3,-2 0.2648 - 4.002 MINOR ENSMUSG00000052217 Hbb-bh1 ENSMUST00000063957 ENSMUSP00000064865 TRANSLATION protein_coding - CCDS21592.1 1 147.0 20.0 3.0 36.9 103.5 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000060402 Chst8 ENSMUST00000135295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060402 Chst8 ENSMUST00000238947 ENSMUSP00000159050 TRANSLATION protein_coding - CCDS21142.1 - 417.0 0.0 0.5 1.1 200.8 0.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060402 Chst8 ENSMUST00000154629 ENSMUSP00000123498 TRANSLATION protein_coding - - 5 123.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 - 0.0 MINOR ENSMUSG00000060402 Chst8 ENSMUST00000206207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060402 Chst8 ENSMUST00000205259 ENSMUSP00000145646 TRANSLATION protein_coding - CCDS21142.1 5 417.0 0.0 0.5 1.1 200.8 0.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060402 Chst8 ENSMUST00000205390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060402 Chst8 ENSMUST00000078686 ENSMUSP00000077752 TRANSLATION protein_coding - CCDS21142.1 1 417.0 0.0 0.5 1.1 200.8 0.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056509 Misfa ENSMUST00000070660 ENSMUSP00000146705 TRANSLATION protein_coding - - 1 53.0 0.0 0.0 2.9 0.0 0.0 -1,-4 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000056509 Misfa ENSMUST00000188312 ENSMUSP00000156094 TRANSLATION protein_coding - - 2 53.0 0.0 0.0 2.9 0.0 0.0 -1,-4 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000056509 Misfa ENSMUST00000185832 ENSMUSP00000145226 TRANSLATION protein_coding - - 1 40.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0656 1 0.0 ALTERNATIVE:2 ENSMUSG00000035165 Kcne3 ENSMUST00000207358 ENSMUSP00000146583 TRANSLATION protein_coding - CCDS21495.1 5 103.0 0.0 1.0 14.7 31.2 1.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035165 Kcne3 ENSMUST00000207995 ENSMUSP00000147151 TRANSLATION protein_coding - CCDS21495.1 2 103.0 0.0 1.0 14.7 31.2 1.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035165 Kcne3 ENSMUST00000179842 ENSMUSP00000136415 TRANSLATION protein_coding - CCDS21495.1 1 103.0 0.0 1.0 14.7 31.2 1.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035165 Kcne3 ENSMUST00000049333 ENSMUSP00000039353 TRANSLATION protein_coding - CCDS21495.1 1 103.0 0.0 1.0 14.7 31.2 1.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035165 Kcne3 ENSMUST00000208260 ENSMUSP00000147047 TRANSLATION protein_coding - CCDS21495.1 3 103.0 0.0 1.0 14.7 31.2 1.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035165 Kcne3 ENSMUST00000170954 ENSMUSP00000130019 TRANSLATION protein_coding - CCDS21495.1 1 103.0 0.0 1.0 14.7 31.2 1.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035165 Kcne3 ENSMUST00000178946 ENSMUSP00000136616 TRANSLATION protein_coding - CCDS21495.1 1 103.0 0.0 1.0 14.7 31.2 1.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035165 Kcne3 ENSMUST00000208555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070699 Sars2 ENSMUST00000094632 ENSMUSP00000092216 TRANSLATION protein_coding - CCDS21053.1 1 518.0 20.0 13.08 8.2 111.5 0.0 -4,0 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000070699 Sars2 ENSMUST00000207877 ENSMUSP00000146884 TRANSLATION nonsense_mediated_decay - - 3 154.0 0.0 2.0 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000070699 Sars2 ENSMUST00000207897 - NO_TRANSLATION retained_intron ENSMUSG00000074336 Apoc4 ENSMUST00000209130 - NO_TRANSLATION retained_intron ENSMUSG00000074336 Apoc4 ENSMUST00000003071 ENSMUSP00000003071 TRANSLATION protein_coding - CCDS20910.1 1 124.0 0.0 1.8 4.3 175.7 0.0 -1,-4 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000070527 Mkrn3 ENSMUST00000094340 ENSMUSP00000091898 TRANSLATION protein_coding - CCDS21327.1 - 544.0 16.0 0.4 0.0 85.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036528 Ppfibp2 ENSMUST00000208159 ENSMUSP00000147038 TRANSLATION protein_coding start - 3 138.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000036528 Ppfibp2 ENSMUST00000208504 - NO_TRANSLATION retained_intron ENSMUSG00000036528 Ppfibp2 ENSMUST00000040056 ENSMUSP00000042574 TRANSLATION protein_coding - CCDS21691.1 1 882.0 0.0 7.85 1.4 181.0 0.0 -4,-5 1.0 25 9.0 PRINCIPAL:2 ENSMUSG00000036528 Ppfibp2 ENSMUST00000098134 ENSMUSP00000095738 TRANSLATION protein_coding - CCDS52356.1 1 904.0 0.0 7.85 0.1 181.0 0.0 -4,-5 0.4672 25 8.0 ALTERNATIVE:2 ENSMUSG00000036528 Ppfibp2 ENSMUST00000239294 ENSMUSP00000159262 TRANSLATION protein_coding stop - - 157.0 0.0 1.7 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036528 Ppfibp2 ENSMUST00000207852 - NO_TRANSLATION retained_intron ENSMUSG00000036528 Ppfibp2 ENSMUST00000208956 ENSMUSP00000146889 TRANSLATION protein_coding stop - 1 203.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030814 Bcl7c ENSMUST00000207019 ENSMUSP00000145706 TRANSLATION protein_coding - - 3 72.0 0.0 1.53 0.0 97.0 0.0 -4,-7 0.0372 - 8.0 MINOR ENSMUSG00000030814 Bcl7c ENSMUST00000106282 ENSMUSP00000101889 TRANSLATION nonsense_mediated_decay - - 1 85.0 0.0 1.53 0.0 97.0 0.0 -4,-7 0.0366 - -2.0 MINOR ENSMUSG00000030814 Bcl7c ENSMUST00000061468 ENSMUSP00000057937 TRANSLATION protein_coding - CCDS21874.1 1 217.0 0.0 1.53 7.6 97.0 0.0 -4,-6 1.0 2 10.0 PRINCIPAL:2 ENSMUSG00000030814 Bcl7c ENSMUST00000206200 ENSMUSP00000146168 TRANSLATION nonsense_mediated_decay start - 3 85.0 0.0 0.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030814 Bcl7c ENSMUST00000153277 ENSMUSP00000145788 TRANSLATION nonsense_mediated_decay start - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030814 Bcl7c ENSMUST00000144103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030814 Bcl7c ENSMUST00000205977 ENSMUSP00000145743 TRANSLATION protein_coding - CCDS85422.1 2 241.0 0.0 1.53 5.0 97.0 0.0 -4,-6 0.7148 2 9.212 ALTERNATIVE:1 ENSMUSG00000025511 Tspan4 ENSMUST00000026585 ENSMUSP00000026585 TRANSLATION protein_coding - CCDS22018.1 1 238.0 0.0 6.83 28.0 189.5 10.0 -1,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025511 Tspan4 ENSMUST00000117634 ENSMUSP00000113085 TRANSLATION protein_coding - CCDS22018.1 1 238.0 0.0 6.83 28.0 189.5 10.0 -1,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025511 Tspan4 ENSMUST00000138092 ENSMUSP00000115421 TRANSLATION protein_coding stop - 5 154.0 0.0 4.58 0.0 131.5 8.0 -1,-5 0.0029 1 -2.0 MINOR ENSMUSG00000025511 Tspan4 ENSMUST00000140858 ENSMUSP00000118936 TRANSLATION protein_coding stop - 3 44.0 0.0 1.5 0.0 0.0 4.0 -1,-5 0.0023 - -2.0 MINOR ENSMUSG00000025511 Tspan4 ENSMUST00000130402 - NO_TRANSLATION retained_intron ENSMUSG00000025511 Tspan4 ENSMUST00000146305 ENSMUSP00000118533 TRANSLATION protein_coding stop - 3 158.0 0.0 4.58 0.0 140.8 8.0 -1,-5 0.0029 1 -2.0 MINOR ENSMUSG00000025511 Tspan4 ENSMUST00000239217 ENSMUSP00000159235 TRANSLATION protein_coding - - - 333.0 0.0 6.83 11.0 189.5 10.0 -4,-6 0.4039 3 13.48 MINOR ENSMUSG00000025494 Sigirr ENSMUST00000209199 ENSMUSP00000147444 TRANSLATION protein_coding stop - 3 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025494 Sigirr ENSMUST00000209887 ENSMUSP00000147730 TRANSLATION nonsense_mediated_decay start - 5 108.0 0.0 0.0 0.0 0.0 2.0 -3,-6 0.0002 - -2.0 MINOR ENSMUSG00000025494 Sigirr ENSMUST00000097958 ENSMUSP00000095571 TRANSLATION protein_coding - CCDS40179.1 1 409.0 0.0 2.078 6.0 95.4 2.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000025494 Sigirr ENSMUST00000209294 ENSMUSP00000147541 TRANSLATION protein_coding - CCDS40179.1 1 409.0 0.0 2.078 6.0 95.4 2.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000025494 Sigirr ENSMUST00000209352 ENSMUSP00000147853 TRANSLATION protein_coding stop - 5 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025494 Sigirr ENSMUST00000210167 ENSMUSP00000147280 TRANSLATION protein_coding - - 1 387.0 0.0 2.078 0.0 95.4 2.0 -4,-5 0.0506 7 12.0 MINOR ENSMUSG00000025494 Sigirr ENSMUST00000210941 - NO_TRANSLATION retained_intron ENSMUSG00000025494 Sigirr ENSMUST00000210978 - NO_TRANSLATION retained_intron ENSMUSG00000040026 Saa3 ENSMUST00000210913 ENSMUSP00000148151 TRANSLATION protein_coding - - 3 61.0 0.0 0.6 0.0 0.0 0.0 4,-1 0.0023 - 1.386 MINOR ENSMUSG00000040026 Saa3 ENSMUST00000211660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040026 Saa3 ENSMUST00000006956 ENSMUSP00000006956 TRANSLATION protein_coding - CCDS21282.1 1 122.0 0.0 2.6 15.1 175.8 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000030382 Slc27a5 ENSMUST00000133977 ENSMUSP00000117208 TRANSLATION protein_coding start/stop - 3 195.0 1.0 2.05 0.0 83.3 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000030382 Slc27a5 ENSMUST00000032539 ENSMUSP00000032539 TRANSLATION protein_coding - CCDS20821.1 1 689.0 22.0 6.53 1.5 246.3 0.0 2,-2 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000030382 Slc27a5 ENSMUST00000120903 ENSMUSP00000112495 TRANSLATION protein_coding - - 1 418.0 9.0 3.195 0.0 140.4 0.0 2,-2 0.0013 6 0.0 MINOR ENSMUSG00000030382 Slc27a5 ENSMUST00000155192 - NO_TRANSLATION retained_intron ENSMUSG00000078118 Or5p59 ENSMUST00000215159 ENSMUSP00000150898 TRANSLATION protein_coding - CCDS21705.1 3 315.0 0.0 1.0 10.4 171.0 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078118 Or5p59 ENSMUST00000104917 ENSMUSP00000100517 TRANSLATION protein_coding - CCDS21705.1 - 315.0 0.0 1.0 10.4 171.0 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004609 Cd33 ENSMUST00000205503 ENSMUSP00000146225 TRANSLATION protein_coding - CCDS21173.1 1 334.0 0.0 2.75 0.0 71.9 1.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000004609 Cd33 ENSMUST00000206977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004609 Cd33 ENSMUST00000039861 ENSMUSP00000045458 TRANSLATION protein_coding - CCDS21173.1 1 334.0 0.0 2.75 0.0 71.9 1.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000004609 Cd33 ENSMUST00000205687 - NO_TRANSLATION retained_intron ENSMUSG00000004609 Cd33 ENSMUST00000004728 ENSMUSP00000004728 TRANSLATION protein_coding - CCDS52224.1 1 403.0 0.0 2.75 0.0 71.9 1.0 4,-1 0.4378 - 8.0 ALTERNATIVE:2 ENSMUSG00000004609 Cd33 ENSMUST00000206371 ENSMUSP00000145596 TRANSLATION protein_coding start - 5 240.0 0.0 1.75 0.0 23.7 0.0 -4,-1 0.0007 - -2.0 MINOR ENSMUSG00000044824 Or55b10 ENSMUST00000058750 ENSMUSP00000052396 TRANSLATION protein_coding - CCDS21533.1 - 316.0 0.0 1.0 1.3 245.8 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000044824 Or55b10 ENSMUST00000216116 ENSMUSP00000150232 TRANSLATION protein_coding - CCDS21533.1 3 316.0 0.0 1.0 1.3 245.8 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000044824 Or55b10 ENSMUST00000217464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030655 Smg1 ENSMUST00000179047 ENSMUSP00000137172 TRANSLATION protein_coding stop - 5 335.0 0.0 6.3375 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000030655 Smg1 ENSMUST00000208930 - NO_TRANSLATION retained_intron ENSMUSG00000030655 Smg1 ENSMUST00000207162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030655 Smg1 ENSMUST00000032891 ENSMUSP00000032891 TRANSLATION protein_coding - CCDS40102.1 5 3658.0 0.0 25.6675 18.4 1066.3 0.0 -4,-2 1.0 49 16.0 PRINCIPAL:1 ENSMUSG00000030655 Smg1 ENSMUST00000179331 ENSMUSP00000137592 TRANSLATION nonsense_mediated_decay start - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0051 - -2.0 MINOR ENSMUSG00000030655 Smg1 ENSMUST00000208025 - NO_TRANSLATION retained_intron ENSMUSG00000030655 Smg1 ENSMUST00000179847 - NO_TRANSLATION retained_intron ENSMUSG00000030655 Smg1 ENSMUST00000178025 ENSMUSP00000136406 TRANSLATION protein_coding start - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030655 Smg1 ENSMUST00000180009 - NO_TRANSLATION retained_intron ENSMUSG00000030655 Smg1 ENSMUST00000208209 - NO_TRANSLATION retained_intron ENSMUSG00000038943 Prc1 ENSMUST00000206178 - NO_TRANSLATION retained_intron ENSMUSG00000038943 Prc1 ENSMUST00000173914 - NO_TRANSLATION retained_intron ENSMUSG00000038943 Prc1 ENSMUST00000174199 ENSMUSP00000133295 TRANSLATION protein_coding - - 5 525.0 0.0 9.65 1.0 474.9 0.0 -4,-5 0.0231 4 4.002 MINOR ENSMUSG00000038943 Prc1 ENSMUST00000172911 - NO_TRANSLATION retained_intron ENSMUSG00000038943 Prc1 ENSMUST00000174172 ENSMUSP00000133387 TRANSLATION protein_coding - - 5 620.0 0.0 10.65 11.8 547.6 0.0 -4,-5 0.7207 5 8.9 ALTERNATIVE:1 ENSMUSG00000038943 Prc1 ENSMUST00000172781 ENSMUSP00000133618 TRANSLATION protein_coding start - 2 151.0 0.0 1.15 0.0 52.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038943 Prc1 ENSMUST00000173170 ENSMUSP00000133817 TRANSLATION protein_coding start/stop - 3 235.0 0.0 5.5 0.0 247.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038943 Prc1 ENSMUST00000173824 ENSMUSP00000133910 TRANSLATION protein_coding - CCDS71986.1 1 566.0 0.0 10.65 15.9 525.2 0.0 -4,-5 1.0 4 10.0 ALTERNATIVE:1 ENSMUSG00000038943 Prc1 ENSMUST00000174051 ENSMUSP00000134262 TRANSLATION protein_coding start - 1 249.0 0.0 3.15 0.0 178.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038943 Prc1 ENSMUST00000047558 ENSMUSP00000043379 TRANSLATION protein_coding - CCDS71985.1 1 603.0 0.0 10.65 12.7 534.5 0.0 -4,-5 0.9561 5 9.14 ALTERNATIVE:1 ENSMUSG00000038943 Prc1 ENSMUST00000163812 ENSMUSP00000129675 TRANSLATION protein_coding - CCDS39998.2 1 606.0 0.0 10.65 12.7 536.8 0.0 -4,-5 0.9579 5 9.14 PRINCIPAL:4 ENSMUSG00000038943 Prc1 ENSMUST00000174111 ENSMUSP00000134282 TRANSLATION protein_coding start - 3 102.0 0.0 0.15 0.0 0.0 0.0 -4,-6 0.0003 1 -2.0 MINOR ENSMUSG00000038943 Prc1 ENSMUST00000174599 ENSMUSP00000134548 TRANSLATION protein_coding start - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000038943 Prc1 ENSMUST00000174254 - NO_TRANSLATION retained_intron ENSMUSG00000070808 Bicra ENSMUST00000210781 ENSMUSP00000148012 TRANSLATION protein_coding - CCDS39780.1 5 1578.0 0.0 2.8 0.1 115.2 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000070808 Bicra ENSMUST00000210713 - NO_TRANSLATION retained_intron ENSMUSG00000070808 Bicra ENSMUST00000209251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070808 Bicra ENSMUST00000094821 ENSMUSP00000092416 TRANSLATION protein_coding - CCDS39780.1 5 1578.0 0.0 2.8 0.1 115.2 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000056978 Hamp2 ENSMUST00000205641 ENSMUSP00000145962 TRANSLATION protein_coding start - 3 103.0 0.0 0.0 0.0 65.7 0.0 -4,-7 0.0286 1 -2.0 MINOR ENSMUSG00000056978 Hamp2 ENSMUST00000217812 ENSMUSP00000151677 TRANSLATION protein_coding - CCDS39894.1 1 84.0 0.0 0.0 4.7 65.7 0.0 2,-3 1.0 1 4.0 PRINCIPAL:4 ENSMUSG00000056978 Hamp2 ENSMUST00000074671 ENSMUSP00000074240 TRANSLATION protein_coding - - 1 83.0 0.0 0.0 4.7 65.7 0.0 2,-3 0.8708 1 4.0 ALTERNATIVE:1 ENSMUSG00000110104 Gm45717 ENSMUST00000211129 ENSMUSP00000148225 TRANSLATION protein_coding,RT - - 3 152.0 0.0 0.8 0.0 94.0 0.0 -4,-5 0.7809 - -2.0 PRINCIPAL:1 ENSMUSG00000053742 Gm5114 ENSMUST00000108017 ENSMUSP00000103652 TRANSLATION protein_coding - CCDS39917.1 1 858.0 0.0 0.0 0.0 204.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070469 Adamtsl3 ENSMUST00000173287 ENSMUSP00000133637 TRANSLATION protein_coding - CCDS57559.1 5 1706.0 6.0 4.497 0.4 316.4 0.0 -2,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000070469 Adamtsl3 ENSMUST00000172784 ENSMUSP00000134150 TRANSLATION protein_coding start - 2 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070469 Adamtsl3 ENSMUST00000174495 - NO_TRANSLATION retained_intron ENSMUSG00000070469 Adamtsl3 ENSMUST00000172490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070469 Adamtsl3 ENSMUST00000173828 ENSMUSP00000133337 TRANSLATION protein_coding - - 5 763.0 0.0 1.866 0.0 98.3 0.0 0,-4 0.0089 - 0.738 MINOR ENSMUSG00000030401 Rtn2 ENSMUST00000209186 - NO_TRANSLATION retained_intron ENSMUSG00000030401 Rtn2 ENSMUST00000032559 ENSMUSP00000032559 TRANSLATION protein_coding - CCDS20896.1 1 471.0 0.0 3.9 2.6 149.0 3.0 -4,-5 1.0 7 9.0 PRINCIPAL:2 ENSMUSG00000030401 Rtn2 ENSMUST00000108468 ENSMUSP00000104108 TRANSLATION protein_coding - CCDS39797.1 1 204.0 0.0 3.9 1.9 149.0 3.0 -4,-7 0.6005 6 8.562 ALTERNATIVE:2 ENSMUSG00000030983 Bccip ENSMUST00000140472 - NO_TRANSLATION retained_intron ENSMUSG00000030983 Bccip ENSMUST00000151711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030983 Bccip ENSMUST00000033282 ENSMUSP00000033282 TRANSLATION protein_coding - CCDS21935.1 1 316.0 0.0 -0.0025 10.4 186.6 0.0 -4,-6 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000030983 Bccip ENSMUST00000157077 - NO_TRANSLATION retained_intron ENSMUSG00000030983 Bccip ENSMUST00000132885 - NO_TRANSLATION retained_intron ENSMUSG00000118454 Wdr88 ENSMUST00000238407 ENSMUSP00000158765 TRANSLATION protein_coding - - - 565.0 0.0 8.25 0.0 145.4 0.0 -4,-5 0.7591 - 12.0 PRINCIPAL:1 ENSMUSG00000006763 Saal1 ENSMUST00000209780 - NO_TRANSLATION retained_intron ENSMUSG00000006763 Saal1 ENSMUST00000209797 - NO_TRANSLATION retained_intron ENSMUSG00000006763 Saal1 ENSMUST00000210628 - NO_TRANSLATION retained_intron ENSMUSG00000006763 Saal1 ENSMUST00000210791 - NO_TRANSLATION retained_intron ENSMUSG00000006763 Saal1 ENSMUST00000143082 ENSMUSP00000120658 TRANSLATION protein_coding - CCDS52253.1 1 474.0 0.0 0.0 13.7 0.0 0.0 -4,-5 1.0 6 4.0 PRINCIPAL:1 ENSMUSG00000030869 Ndufab1 ENSMUST00000153173 - NO_TRANSLATION retained_intron ENSMUSG00000030869 Ndufab1 ENSMUST00000130904 - NO_TRANSLATION retained_intron ENSMUSG00000030869 Ndufab1 ENSMUST00000123296 ENSMUSP00000116177 TRANSLATION protein_coding - CCDS21809.1 1 156.0 3.0 2.75 14.8 45.9 0.0 -1,2 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000030869 Ndufab1 ENSMUST00000146964 - NO_TRANSLATION retained_intron ENSMUSG00000030869 Ndufab1 ENSMUST00000146022 - NO_TRANSLATION retained_intron ENSMUSG00000030869 Ndufab1 ENSMUST00000130857 - NO_TRANSLATION retained_intron ENSMUSG00000030869 Ndufab1 ENSMUST00000106471 ENSMUSP00000102079 TRANSLATION protein_coding start - 3 128.0 3.0 2.75 0.0 45.9 0.0 -3,-1 0.0509 5 -2.0 MINOR ENSMUSG00000030869 Ndufab1 ENSMUST00000033157 ENSMUSP00000033157 TRANSLATION protein_coding - CCDS21809.1 1 156.0 3.0 2.75 14.8 45.9 0.0 -1,2 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000030869 Ndufab1 ENSMUST00000145863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030869 Ndufab1 ENSMUST00000139456 ENSMUSP00000114756 TRANSLATION protein_coding start - 2 127.0 3.0 2.75 0.0 45.9 0.0 -3,0 0.0458 5 -2.0 MINOR ENSMUSG00000058200 Or51b4 ENSMUST00000216303 ENSMUSP00000149058 TRANSLATION protein_coding - CCDS21594.1 5 311.0 0.0 1.0 11.4 374.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058200 Or51b4 ENSMUST00000079117 ENSMUSP00000078119 TRANSLATION protein_coding - CCDS21594.1 - 311.0 0.0 1.0 11.4 374.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000030930 Chst15 ENSMUST00000080215 ENSMUSP00000079105 TRANSLATION protein_coding - CCDS21922.1 1 561.0 0.0 0.51 17.4 49.7 1.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030930 Chst15 ENSMUST00000077472 ENSMUSP00000076682 TRANSLATION protein_coding - CCDS21922.1 1 561.0 0.0 0.51 17.4 49.7 1.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000030930 Chst15 ENSMUST00000207068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030930 Chst15 ENSMUST00000132508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053985 Zfp14 ENSMUST00000077787 ENSMUSP00000076960 TRANSLATION protein_coding - CCDS39875.1 1 501.0 52.0 1.0 3.3 344.6 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000053985 Zfp14 ENSMUST00000207072 ENSMUSP00000146913 TRANSLATION protein_coding - CCDS39875.1 1 501.0 52.0 1.0 3.3 344.6 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000053985 Zfp14 ENSMUST00000207873 ENSMUSP00000146824 TRANSLATION protein_coding - CCDS39875.1 1 501.0 52.0 1.0 3.3 344.6 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000039745 Htatip2 ENSMUST00000085272 ENSMUSP00000082374 TRANSLATION protein_coding - CCDS52260.1 1 242.0 26.0 4.75 1.5 38.3 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:2 ENSMUSG00000039745 Htatip2 ENSMUST00000207895 ENSMUSP00000146858 TRANSLATION protein_coding - CCDS85310.1 1 275.0 26.0 4.75 0.1 37.8 0.0 -1,-4 0.2749 8 12.0 ALTERNATIVE:2 ENSMUSG00000039745 Htatip2 ENSMUST00000208048 - NO_TRANSLATION retained_intron ENSMUSG00000036751 Cox6b1 ENSMUST00000207851 - NO_TRANSLATION retained_intron ENSMUSG00000036751 Cox6b1 ENSMUST00000208838 ENSMUSP00000146959 TRANSLATION protein_coding - - 3 43.0 0.0 1.25 0.0 31.5 0.0 -4,-5 0.0 4 5.766 MINOR ENSMUSG00000036751 Cox6b1 ENSMUST00000208352 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036751 Cox6b1 ENSMUST00000075738 ENSMUSP00000075150 TRANSLATION protein_coding - CCDS39887.1 1 86.0 0.0 2.58 34.9 66.1 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000036892 Prodh2 ENSMUST00000133318 ENSMUSP00000122546 TRANSLATION protein_coding stop - 5 246.0 2.0 3.133 0.0 0.0 0.0 -4,-1 0.0368 4 -2.0 MINOR ENSMUSG00000036892 Prodh2 ENSMUST00000058280 ENSMUSP00000062214 TRANSLATION protein_coding - CCDS21093.1 1 456.0 27.0 7.521 0.4 0.0 0.0 -4,-2 0.9333 5 12.0 PRINCIPAL:1 ENSMUSG00000036892 Prodh2 ENSMUST00000130839 ENSMUSP00000117480 TRANSLATION nonsense_mediated_decay - - 5 142.0 0.0 1.4 0.0 0.0 0.0 -4,-2 0.0238 1 -2.0 MINOR ENSMUSG00000036892 Prodh2 ENSMUST00000142514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036892 Prodh2 ENSMUST00000122876 ENSMUSP00000114278 TRANSLATION protein_coding start - 5 139.0 7.0 1.4 0.0 0.0 0.0 -4,-7 0.0165 - -2.0 MINOR ENSMUSG00000036892 Prodh2 ENSMUST00000142575 ENSMUSP00000114778 TRANSLATION protein_coding stop - 5 284.0 5.0 1.931 0.0 0.0 0.0 -4,-1 0.0421 3 -2.0 MINOR ENSMUSG00000036892 Prodh2 ENSMUST00000131789 - NO_TRANSLATION retained_intron ENSMUSG00000036892 Prodh2 ENSMUST00000131040 ENSMUSP00000116662 TRANSLATION protein_coding start/stop - 5 260.0 12.0 3.258 0.0 0.0 0.0 0,-5 0.0742 2 -2.0 MINOR ENSMUSG00000109951 Or52s19 ENSMUST00000214110 ENSMUSP00000151190 TRANSLATION protein_coding - CCDS21570.1 5 314.0 0.0 1.0 9.9 337.2 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109951 Or52s19 ENSMUST00000217416 ENSMUSP00000150751 TRANSLATION protein_coding - CCDS21570.1 5 314.0 0.0 1.0 9.9 337.2 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109951 Or52s19 ENSMUST00000210431 ENSMUSP00000147592 TRANSLATION protein_coding - CCDS21570.1 3 314.0 0.0 1.0 9.9 337.2 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000109951 Or52s19 ENSMUST00000080474 ENSMUSP00000079328 TRANSLATION protein_coding - CCDS21570.1 - 314.0 0.0 1.0 9.9 337.2 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000117477 Gm50092 ENSMUST00000234781 ENSMUSP00000157233 TRANSLATION protein_coding - - - 575.0 0.0 0.0 0.0 0.0 0.0 -2,1 0.6256 2 0.0 PRINCIPAL:1 ENSMUSG00000057195 Ceacam13 ENSMUST00000081703 ENSMUSP00000080404 TRANSLATION protein_coding - CCDS20866.1 1 263.0 0.0 0.8 0.3 26.8 0.0 -1,-4 1.0 - 6.0 PRINCIPAL:5 ENSMUSG00000057195 Ceacam13 ENSMUST00000108488 ENSMUSP00000104128 TRANSLATION protein_coding - CCDS39790.1 1 263.0 0.0 0.8 0.3 26.8 0.0 -1,-4 1.0 - 6.0 ALTERNATIVE:2 ENSMUSG00000095115 Itpripl2 ENSMUST00000178344 ENSMUSP00000136409 TRANSLATION protein_coding - CCDS52373.1 - 535.0 0.0 0.0 9.9 35.8 0.0 -1,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000095931 Vmn1r159 ENSMUST00000167871 ENSMUSP00000129692 TRANSLATION protein_coding - CCDS52121.1 - 305.0 0.0 0.0 0.4 54.2 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000034690 Nlrp4c ENSMUST00000121583 ENSMUSP00000113824 TRANSLATION protein_coding - CCDS51988.1 1 982.0 7.0 7.45 0.4 273.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034690 Nlrp4c ENSMUST00000208360 ENSMUSP00000146613 TRANSLATION protein_coding - CCDS51988.1 5 982.0 7.0 7.45 0.4 273.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034690 Nlrp4c ENSMUST00000207267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034690 Nlrp4c ENSMUST00000037728 ENSMUSP00000046503 TRANSLATION protein_coding - CCDS51988.1 1 982.0 7.0 7.45 0.4 273.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000047037 Nipa1 ENSMUST00000052204 ENSMUSP00000053871 TRANSLATION protein_coding - CCDS21317.1 1 323.0 0.0 4.5 3.2 280.3 0.0 -2,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000045039 Megf8 ENSMUST00000128119 ENSMUSP00000122192 TRANSLATION protein_coding - CCDS52148.1 1 2789.0 0.0 5.132 1.9 285.7 0.0 3,-2 1.0 21 13.0 PRINCIPAL:1 ENSMUSG00000045039 Megf8 ENSMUST00000153077 - NO_TRANSLATION retained_intron ENSMUSG00000078808 Vmn1r58 ENSMUST00000228728 ENSMUSP00000154393 TRANSLATION protein_coding - CCDS39747.1 - 310.0 0.0 0.0 0.0 66.1 5.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078808 Vmn1r58 ENSMUST00000227549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078808 Vmn1r58 ENSMUST00000226315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078808 Vmn1r58 ENSMUST00000108569 ENSMUSP00000104209 TRANSLATION protein_coding - CCDS39747.1 1 310.0 0.0 0.0 0.0 66.1 5.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000073898 Or10a5 ENSMUST00000098139 ENSMUSP00000095743 TRANSLATION protein_coding - CCDS21684.1 - 324.0 0.0 1.0 2.5 192.2 6.0 -4,-5 0.584 - 12.444 MINOR ENSMUSG00000073898 Or10a5 ENSMUST00000213623 ENSMUSP00000150042 TRANSLATION protein_coding - - 5 317.0 0.0 1.0 14.5 192.2 6.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047655 Vmn1r74 ENSMUST00000228471 ENSMUSP00000154746 TRANSLATION protein_coding - CCDS20801.1 - 304.0 0.0 0.0 0.4 104.9 5.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047655 Vmn1r74 ENSMUST00000050416 ENSMUSP00000055148 TRANSLATION protein_coding - CCDS20801.1 - 304.0 0.0 0.0 0.4 104.9 5.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000040177 2310057M21Rik ENSMUST00000059438 ENSMUSP00000050128 TRANSLATION protein_coding - CCDS40159.1 1 444.0 0.0 0.0 7.6 192.5 0.0 -4,-5 1.0 8 8.0 PRINCIPAL:1 ENSMUSG00000040177 2310057M21Rik ENSMUST00000207305 ENSMUSP00000146800 TRANSLATION protein_coding start/stop - 5 139.0 0.0 0.0 0.0 94.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000040177 2310057M21Rik ENSMUST00000207354 ENSMUSP00000147242 TRANSLATION protein_coding stop - 3 228.0 0.0 0.0 0.0 192.5 0.0 -4,-5 0.0332 4 -2.0 MINOR ENSMUSG00000040177 2310057M21Rik ENSMUST00000208526 ENSMUSP00000147153 TRANSLATION nonsense_mediated_decay - - 1 367.0 0.0 0.0 0.0 192.5 0.0 -4,-5 0.0366 6 -2.0 MINOR ENSMUSG00000040177 2310057M21Rik ENSMUST00000208509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040177 2310057M21Rik ENSMUST00000207117 - NO_TRANSLATION retained_intron ENSMUSG00000042289 Hsd3b7 ENSMUST00000138432 ENSMUSP00000114536 TRANSLATION protein_coding stop - 5 77.0 12.0 1.58 0.0 39.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042289 Hsd3b7 ENSMUST00000155005 ENSMUSP00000145804 TRANSLATION nonsense_mediated_decay - - 3 70.0 12.0 1.705 0.0 40.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042289 Hsd3b7 ENSMUST00000139068 ENSMUSP00000121246 TRANSLATION protein_coding stop - 3 100.0 15.0 2.58 0.0 96.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042289 Hsd3b7 ENSMUST00000106272 ENSMUSP00000101879 TRANSLATION protein_coding - - 5 338.0 27.0 7.58 1.2 202.2 1.0 -4,-7 0.0264 4 6.051 MINOR ENSMUSG00000042289 Hsd3b7 ENSMUST00000125188 ENSMUSP00000145613 TRANSLATION protein_coding stop - 2 119.0 21.0 3.25 0.0 123.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042289 Hsd3b7 ENSMUST00000206674 ENSMUSP00000146308 TRANSLATION protein_coding stop - 3 141.0 12.0 1.73 0.0 37.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042289 Hsd3b7 ENSMUST00000144748 - NO_TRANSLATION retained_intron ENSMUSG00000042289 Hsd3b7 ENSMUST00000136597 - NO_TRANSLATION retained_intron ENSMUSG00000042289 Hsd3b7 ENSMUST00000046863 ENSMUSP00000036245 TRANSLATION protein_coding - CCDS40145.1 1 369.0 33.0 8.58 12.8 324.3 1.0 -4,-7 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000042289 Hsd3b7 ENSMUST00000206995 - NO_TRANSLATION retained_intron ENSMUSG00000042289 Hsd3b7 ENSMUST00000106271 ENSMUSP00000101878 TRANSLATION protein_coding - - 5 221.0 33.0 5.03 0.0 203.4 0.0 -4,-7 0.0012 2 6.0 MINOR ENSMUSG00000042289 Hsd3b7 ENSMUST00000124631 - NO_TRANSLATION retained_intron ENSMUSG00000042289 Hsd3b7 ENSMUST00000132702 - NO_TRANSLATION retained_intron ENSMUSG00000030619 Eed ENSMUST00000157001 - NO_TRANSLATION retained_intron ENSMUSG00000030619 Eed ENSMUST00000208643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030619 Eed ENSMUST00000207980 ENSMUSP00000146892 TRANSLATION protein_coding start - 3 118.0 0.0 3.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000030619 Eed ENSMUST00000208196 - NO_TRANSLATION retained_intron ENSMUSG00000030619 Eed ENSMUST00000208245 - NO_TRANSLATION retained_intron ENSMUSG00000030619 Eed ENSMUST00000107234 ENSMUSP00000102853 TRANSLATION protein_coding - CCDS40016.1 1 441.0 0.0 11.03 20.7 41.2 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000030619 Eed ENSMUST00000207609 - NO_TRANSLATION retained_intron ENSMUSG00000030619 Eed ENSMUST00000238792 ENSMUSP00000159171 TRANSLATION protein_coding - - - 500.0 0.0 11.03 0.0 41.2 0.0 -4,-7 0.0275 15 12.0 MINOR ENSMUSG00000030619 Eed ENSMUST00000208977 ENSMUSP00000146812 TRANSLATION protein_coding stop - 3 220.0 0.0 5.78 0.0 41.2 0.0 -4,-5 0.0028 6 -2.0 MINOR ENSMUSG00000030619 Eed ENSMUST00000207996 - NO_TRANSLATION retained_intron ENSMUSG00000030619 Eed ENSMUST00000238981 ENSMUSP00000159149 TRANSLATION protein_coding - CCDS40016.1 - 441.0 0.0 11.03 20.7 41.2 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000030619 Eed ENSMUST00000207568 - NO_TRANSLATION retained_intron ENSMUSG00000096164 Vmn1r93 ENSMUST00000098747 ENSMUSP00000096343 TRANSLATION protein_coding - CCDS20921.1 - 321.0 0.0 0.0 0.0 58.9 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000052353 Cemip ENSMUST00000142518 - NO_TRANSLATION retained_intron ENSMUSG00000052353 Cemip ENSMUST00000064174 ENSMUSP00000063277 TRANSLATION protein_coding - CCDS21416.1 1 1361.0 0.0 20.16 8.2 268.2 0.0 1,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000052353 Cemip ENSMUST00000150495 - NO_TRANSLATION retained_intron ENSMUSG00000052353 Cemip ENSMUST00000147578 - NO_TRANSLATION retained_intron ENSMUSG00000052353 Cemip ENSMUST00000145171 - NO_TRANSLATION retained_intron ENSMUSG00000073913 Or52e5 ENSMUST00000213622 ENSMUSP00000150213 TRANSLATION protein_coding - CCDS21639.1 5 313.0 0.0 1.0 11.4 383.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073913 Or52e5 ENSMUST00000098160 ENSMUSP00000095763 TRANSLATION protein_coding - CCDS21639.1 - 313.0 0.0 1.0 11.4 383.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058761 Rnf169 ENSMUST00000080817 ENSMUSP00000079631 TRANSLATION protein_coding - CCDS52322.1 5 694.0 6.0 0.2 0.4 0.0 0.0 -4,0 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000058761 Rnf169 ENSMUST00000174264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056883 Or12j4 ENSMUST00000215308 ENSMUSP00000150552 TRANSLATION protein_coding - CCDS21977.1 5 320.0 0.0 1.0 0.0 165.1 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000056883 Or12j4 ENSMUST00000071755 ENSMUSP00000071667 TRANSLATION protein_coding - CCDS21977.1 - 320.0 0.0 1.0 0.0 165.1 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000056883 Or12j4 ENSMUST00000216258 ENSMUSP00000149238 TRANSLATION protein_coding - CCDS21977.1 5 320.0 0.0 1.0 0.0 165.1 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000056883 Or12j4 ENSMUST00000216292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056883 Or12j4 ENSMUST00000217179 ENSMUSP00000150653 TRANSLATION protein_coding - CCDS21977.1 5 320.0 0.0 1.0 0.0 165.1 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000056883 Or12j4 ENSMUST00000211093 ENSMUSP00000148260 TRANSLATION protein_coding - CCDS21977.1 3 320.0 0.0 1.0 0.0 165.1 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030798 Cd37 ENSMUST00000209677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030798 Cd37 ENSMUST00000098461 ENSMUSP00000096061 TRANSLATION protein_coding - CCDS21237.1 1 281.0 0.0 4.52 6.9 177.3 12.0 -2,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000030798 Cd37 ENSMUST00000210372 ENSMUSP00000148047 TRANSLATION protein_coding - - 1 60.0 0.0 1.05 0.0 0.0 3.0 -2,-5 0.0002 - 0.0 MINOR ENSMUSG00000030798 Cd37 ENSMUST00000033063 ENSMUSP00000033063 TRANSLATION protein_coding - CCDS71958.1 1 303.0 0.0 4.52 1.1 177.3 12.0 -4,-6 0.3876 2 12.034 MINOR ENSMUSG00000030798 Cd37 ENSMUST00000210226 ENSMUSP00000148065 TRANSLATION nonsense_mediated_decay start - 5 61.0 0.0 0.87 0.0 0.0 1.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000030798 Cd37 ENSMUST00000210078 ENSMUSP00000147818 TRANSLATION protein_coding stop - 5 235.0 0.0 3.12 0.0 131.3 7.0 -4,-7 0.0033 1 -2.0 MINOR ENSMUSG00000030798 Cd37 ENSMUST00000211373 ENSMUSP00000148136 TRANSLATION protein_coding - - 1 258.0 0.0 4.22 0.0 168.4 10.0 -2,-5 0.0191 1 10.866 MINOR ENSMUSG00000030798 Cd37 ENSMUST00000209779 ENSMUSP00000147416 TRANSLATION protein_coding - - 1 252.0 0.0 3.39 0.0 140.7 9.0 -2,-5 0.0037 1 7.542 MINOR ENSMUSG00000030798 Cd37 ENSMUST00000210000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030789 Itgax ENSMUST00000033053 ENSMUSP00000033053 TRANSLATION protein_coding - CCDS40150.1 1 1169.0 27.0 25.06 0.0 368.8 0.0 4,-1 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000030789 Itgax ENSMUST00000205460 ENSMUSP00000145587 TRANSLATION protein_coding - - 1 257.0 4.0 5.9 0.1 74.1 0.0 4,-1 0.0006 3 0.0 MINOR ENSMUSG00000030789 Itgax ENSMUST00000205408 - NO_TRANSLATION retained_intron ENSMUSG00000030789 Itgax ENSMUST00000206396 - NO_TRANSLATION retained_intron ENSMUSG00000069390 Or2d3 ENSMUST00000210644 ENSMUSP00000147446 TRANSLATION protein_coding - CCDS21678.1 3 307.0 0.0 1.0 15.2 196.3 6.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000069390 Or2d3 ENSMUST00000088687 ENSMUSP00000086062 TRANSLATION protein_coding - CCDS21678.1 - 307.0 0.0 1.0 15.2 196.3 6.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000069390 Or2d3 ENSMUST00000208759 ENSMUSP00000146644 TRANSLATION protein_coding - CCDS21678.1 3 307.0 0.0 1.0 15.2 196.3 6.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000069390 Or2d3 ENSMUST00000214112 ENSMUSP00000150100 TRANSLATION protein_coding - CCDS21678.1 5 307.0 0.0 1.0 15.2 196.3 6.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000069390 Or2d3 ENSMUST00000213251 ENSMUSP00000150235 TRANSLATION protein_coding - CCDS21678.1 5 307.0 0.0 1.0 15.2 196.3 6.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000094445 Ccdc179 ENSMUST00000185841 ENSMUSP00000141159 TRANSLATION protein_coding - - 5 54.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0083 - 3.6 MINOR ENSMUSG00000094445 Ccdc179 ENSMUST00000185758 ENSMUSP00000140226 TRANSLATION protein_coding - - 3 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0173 - 0.0 MINOR ENSMUSG00000094445 Ccdc179 ENSMUST00000180038 ENSMUSP00000136157 TRANSLATION protein_coding - CCDS57552.1 1 67.0 0.0 1.25 6.9 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000094445 Ccdc179 ENSMUST00000190307 ENSMUSP00000141120 TRANSLATION protein_coding - - 3 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.011 - 0.0 MINOR ENSMUSG00000066979 Bub3 ENSMUST00000207231 ENSMUSP00000147045 TRANSLATION protein_coding stop - 5 220.0 0.0 3.31 0.0 43.4 0.0 -4,-5 0.0011 6 -2.0 MINOR ENSMUSG00000066979 Bub3 ENSMUST00000207442 ENSMUSP00000146334 TRANSLATION protein_coding - - 3 324.0 0.0 7.08 34.7 59.7 0.0 -4,-5 0.8443 11 12.0 ALTERNATIVE:1 ENSMUSG00000066979 Bub3 ENSMUST00000208848 - NO_TRANSLATION retained_intron ENSMUSG00000066979 Bub3 ENSMUST00000084502 ENSMUSP00000081547 TRANSLATION protein_coding - CCDS40160.1 1 326.0 0.0 7.08 34.7 59.7 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:4 ENSMUSG00000066979 Bub3 ENSMUST00000209131 - NO_TRANSLATION retained_intron ENSMUSG00000066979 Bub3 ENSMUST00000208571 ENSMUSP00000146881 TRANSLATION protein_coding - - 5 184.0 0.0 3.0 0.0 43.4 0.0 -4,-5 0.0003 6 2.0 MINOR ENSMUSG00000066979 Bub3 ENSMUST00000207736 ENSMUSP00000146670 TRANSLATION nonsense_mediated_decay - - 5 100.0 0.0 1.915 0.0 17.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000055305 Zfp93 ENSMUST00000155851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055305 Zfp93 ENSMUST00000108438 ENSMUSP00000104077 TRANSLATION protein_coding - CCDS39828.1 1 645.0 52.0 1.0 0.0 343.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000055305 Zfp93 ENSMUST00000032696 ENSMUSP00000032696 TRANSLATION protein_coding - CCDS39828.1 1 645.0 52.0 1.0 0.0 343.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000002983 Relb ENSMUST00000141586 ENSMUSP00000146643 TRANSLATION protein_coding stop - 5 116.0 0.0 1.75 0.0 90.5 0.0 -3,1 0.0 1 -2.0 MINOR ENSMUSG00000002983 Relb ENSMUST00000148040 - NO_TRANSLATION retained_intron ENSMUSG00000002983 Relb ENSMUST00000130543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002983 Relb ENSMUST00000049912 ENSMUSP00000050166 TRANSLATION protein_coding - CCDS71896.1 1 555.0 0.0 7.25 2.2 463.3 0.0 -4,-7 0.7088 6 11.604 MINOR ENSMUSG00000002983 Relb ENSMUST00000131759 - NO_TRANSLATION retained_intron ENSMUSG00000002983 Relb ENSMUST00000137615 - NO_TRANSLATION retained_intron ENSMUSG00000002983 Relb ENSMUST00000153309 ENSMUSP00000146669 TRANSLATION protein_coding stop - 3 138.0 0.0 2.5 0.0 125.8 0.0 -3,1 0.0 1 -2.0 MINOR ENSMUSG00000002983 Relb ENSMUST00000094762 ENSMUSP00000092355 TRANSLATION protein_coding - CCDS39799.1 1 558.0 0.0 7.25 3.3 478.6 0.0 -4,-7 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000002983 Relb ENSMUST00000208087 ENSMUSP00000147172 TRANSLATION nonsense_mediated_decay - - 1 147.0 0.0 1.0 0.0 204.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000090436 Vmn2r75 ENSMUST00000167830 ENSMUSP00000126973 TRANSLATION protein_coding - CCDS52297.1 5 853.0 4.0 2.19 0.0 346.9 0.0 0,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000034957 Cebpa ENSMUST00000205391 ENSMUSP00000145942 TRANSLATION protein_coding - - 5 159.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000034957 Cebpa ENSMUST00000042985 ENSMUSP00000096129 TRANSLATION protein_coding - CCDS21145.1 - 359.0 0.0 2.0 7.1 58.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073916 Or52n5 ENSMUST00000214260 ENSMUSP00000150928 TRANSLATION protein_coding - CCDS21632.1 5 317.0 0.0 1.0 14.7 342.0 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073916 Or52n5 ENSMUST00000210138 ENSMUSP00000147742 TRANSLATION protein_coding - CCDS21632.1 3 317.0 0.0 1.0 14.7 342.0 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073916 Or52n5 ENSMUST00000098164 ENSMUSP00000095767 TRANSLATION protein_coding - CCDS21632.1 - 317.0 0.0 1.0 14.7 342.0 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074109 Mrgprx2 ENSMUST00000186394 ENSMUSP00000140945 TRANSLATION protein_coding - - 1 109.0 0.0 1.6 0.0 0.0 2.0 -1,-5 0.0027 - 3.69 MINOR ENSMUSG00000074109 Mrgprx2 ENSMUST00000098433 ENSMUSP00000127022 TRANSLATION protein_coding - CCDS52258.1 1 352.0 0.0 2.6 0.1 34.1 8.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091435 Vmn1r115 ENSMUST00000169374 ENSMUSP00000128692 TRANSLATION protein_coding - CCDS52083.1 - 295.0 0.0 0.0 0.0 51.3 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054169 Ceacam10 ENSMUST00000206847 ENSMUSP00000146217 TRANSLATION protein_coding - - 2 145.0 0.0 1.25 0.1 41.5 0.0 1,-2 0.0014 2 5.37 MINOR ENSMUSG00000054169 Ceacam10 ENSMUST00000038069 ENSMUSP00000037036 TRANSLATION protein_coding - CCDS39833.1 1 265.0 0.0 3.25 0.0 73.8 0.0 2,-3 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000054169 Ceacam10 ENSMUST00000206850 ENSMUSP00000146284 TRANSLATION nonsense_mediated_decay start - 5 82.0 0.0 1.1 0.0 0.0 0.0 2,-2 0.0024 - -2.0 MINOR ENSMUSG00000054169 Ceacam10 ENSMUST00000206380 - NO_TRANSLATION retained_intron ENSMUSG00000035642 Aamdc ENSMUST00000138060 ENSMUSP00000116214 TRANSLATION protein_coding - CCDS52314.1 1 90.0 0.0 2.58 0.0 36.1 0.0 -4,-6 0.0046 6 6.738 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000151840 ENSMUSP00000115852 TRANSLATION protein_coding stop - 5 81.0 0.0 1.33 0.0 0.0 0.0 0,-3 0.0 2 -2.0 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000146605 ENSMUSP00000117571 TRANSLATION protein_coding - - 3 139.0 0.0 3.66 0.0 74.7 0.0 -4,-2 0.0271 8 12.0 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000072725 ENSMUSP00000072508 TRANSLATION protein_coding - CCDS52315.1 1 118.0 0.0 2.58 0.0 36.1 0.0 0,-3 0.05 6 6.738 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000135998 ENSMUSP00000118391 TRANSLATION protein_coding stop - 5 128.0 0.0 2.91 0.0 52.0 0.0 0,-3 0.0049 5 -2.0 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000178078 ENSMUSP00000137067 TRANSLATION protein_coding - CCDS52316.1 2 150.0 0.0 3.66 0.0 74.7 0.0 0,-3 0.1801 8 12.0 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000140805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035642 Aamdc ENSMUST00000154779 ENSMUSP00000120195 TRANSLATION nonsense_mediated_decay - - 2 61.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000126085 ENSMUSP00000120089 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 0.0 0.0 0.0 0.0 0,-2 0.0 - -2.0 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000124552 ENSMUSP00000120661 TRANSLATION protein_coding - - 3 52.0 0.0 1.91 0.0 40.2 0.0 -4,-5 0.0 4 5.73 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000144858 ENSMUSP00000117205 TRANSLATION protein_coding - - 1 68.0 0.0 1.58 0.0 38.4 0.0 1,-2 0.0017 4 4.926 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000042627 ENSMUSP00000035883 TRANSLATION protein_coding - CCDS52315.1 3 118.0 0.0 2.58 0.0 36.1 0.0 0,-3 0.05 6 6.738 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000154853 ENSMUSP00000115672 TRANSLATION protein_coding - CCDS52316.1 1 150.0 0.0 3.66 0.0 74.7 0.0 0,-3 0.1801 8 12.0 MINOR ENSMUSG00000035642 Aamdc ENSMUST00000136757 ENSMUSP00000121940 TRANSLATION protein_coding - CCDS21461.1 2 122.0 0.0 3.66 36.9 74.7 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000035642 Aamdc ENSMUST00000205430 - NO_TRANSLATION retained_intron ENSMUSG00000060503 Or2d2 ENSMUST00000214919 ENSMUSP00000150168 TRANSLATION protein_coding - CCDS21686.1 5 315.0 0.0 1.0 11.5 193.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060503 Or2d2 ENSMUST00000076958 ENSMUSP00000076225 TRANSLATION protein_coding - CCDS21686.1 - 315.0 0.0 1.0 11.5 193.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060188 Cxcl17 ENSMUST00000200880 ENSMUSP00000144096 TRANSLATION protein_coding - CCDS80680.1 1 119.0 0.0 0.0 1.4 157.0 0.0 3,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000083649 Rasl2-9 ENSMUST00000147835 ENSMUSP00000129559 TRANSLATION protein_coding - CCDS20760.1 - 216.0 21.0 1.0 33.2 164.4 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000074291 Vmn1r168 ENSMUST00000098704 ENSMUSP00000096301 TRANSLATION protein_coding - CCDS52131.1 - 309.0 0.0 0.0 0.0 48.0 5.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000074291 Vmn1r168 ENSMUST00000235361 ENSMUSP00000157979 TRANSLATION protein_coding - - - 252.0 0.0 0.0 0.0 45.7 4.0 0,-4 0.0339 - 0.0 MINOR ENSMUSG00000074291 Vmn1r168 ENSMUST00000236919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078798 Sult2a1 ENSMUST00000108522 ENSMUSP00000104162 TRANSLATION protein_coding - CCDS52031.1 1 285.0 19.0 6.0 9.0 271.3 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000056043 Rgs9bp ENSMUST00000069912 ENSMUSP00000065511 TRANSLATION protein_coding - CCDS21153.1 - 237.0 0.0 0.0 21.7 0.0 0.0 -4,-5 1.0 - 4.0 PRINCIPAL:1 ENSMUSG00000066197 Gpr139 ENSMUST00000084650 ENSMUSP00000081700 TRANSLATION protein_coding - CCDS21778.1 1 345.0 0.0 0.6 16.7 61.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042308 Setd1a ENSMUST00000047075 ENSMUSP00000047672 TRANSLATION protein_coding - CCDS40144.1 5 1716.0 18.0 5.094 0.1 150.9 0.0 -4,-5 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000042308 Setd1a ENSMUST00000047157 ENSMUSP00000037600 TRANSLATION protein_coding - CCDS40144.1 5 1716.0 18.0 5.094 0.1 150.9 0.0 -4,-5 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000042308 Setd1a ENSMUST00000144406 ENSMUSP00000115248 TRANSLATION protein_coding stop - 5 247.0 0.0 1.75 0.0 30.1 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000042308 Setd1a ENSMUST00000143951 ENSMUSP00000115994 TRANSLATION protein_coding stop - 5 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042308 Setd1a ENSMUST00000126761 ENSMUSP00000120666 TRANSLATION protein_coding stop - 3 196.0 0.0 1.75 0.0 30.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000042308 Setd1a ENSMUST00000141439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010476 Ebf3 ENSMUST00000210774 ENSMUSP00000147829 TRANSLATION protein_coding - CCDS52422.1 1 596.0 4.0 10.3 27.1 642.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000010476 Ebf3 ENSMUST00000209864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010476 Ebf3 ENSMUST00000033378 ENSMUSP00000033378 TRANSLATION protein_coding - CCDS21946.1 1 551.0 4.0 10.3 23.1 642.1 0.0 -4,-5 0.9064 - 15.388 ALTERNATIVE:1 ENSMUSG00000010476 Ebf3 ENSMUST00000169486 ENSMUSP00000132563 TRANSLATION protein_coding - CCDS52423.1 5 587.0 4.0 10.3 23.1 642.1 0.0 -4,-5 0.974 - 15.388 ALTERNATIVE:1 ENSMUSG00000010476 Ebf3 ENSMUST00000106118 ENSMUSP00000101724 TRANSLATION protein_coding - CCDS52423.1 5 587.0 4.0 10.3 23.1 642.1 0.0 -4,-5 0.974 - 15.388 ALTERNATIVE:1 ENSMUSG00000010476 Ebf3 ENSMUST00000209905 - NO_TRANSLATION retained_intron ENSMUSG00000010476 Ebf3 ENSMUST00000209578 ENSMUSP00000147512 TRANSLATION protein_coding - - 1 344.0 0.0 5.0 0.0 211.1 0.0 -4,-2 0.0 - 1.334 MINOR ENSMUSG00000110253 Or5p70 ENSMUST00000215215 ENSMUSP00000150689 TRANSLATION protein_coding - CCDS21714.1 5 330.0 0.0 1.0 2.0 169.9 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000110253 Or5p70 ENSMUST00000210990 ENSMUSP00000147501 TRANSLATION protein_coding - CCDS21714.1 - 330.0 0.0 1.0 2.0 169.9 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000030774 Pak1 ENSMUST00000206351 ENSMUSP00000146291 TRANSLATION protein_coding stop - 3 118.0 0.0 1.75 0.0 70.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030774 Pak1 ENSMUST00000207017 - NO_TRANSLATION retained_intron ENSMUSG00000030774 Pak1 ENSMUST00000205757 - NO_TRANSLATION retained_intron ENSMUSG00000030774 Pak1 ENSMUST00000033040 ENSMUSP00000033040 TRANSLATION protein_coding - CCDS21464.1 1 544.0 19.0 9.7 24.6 335.4 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000030774 Pak1 ENSMUST00000206984 ENSMUSP00000146055 TRANSLATION protein_coding - CCDS21464.1 5 544.0 19.0 9.7 24.6 335.4 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000030774 Pak1 ENSMUST00000156637 ENSMUSP00000138684 TRANSLATION nonsense_mediated_decay - - 1 178.0 0.0 2.5 0.0 89.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000049350 Zg16 ENSMUST00000051122 ENSMUSP00000056916 TRANSLATION protein_coding - CCDS21856.1 1 167.0 0.0 3.0 13.3 26.5 0.0 3,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000049350 Zg16 ENSMUST00000205623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049350 Zg16 ENSMUST00000205559 ENSMUSP00000145957 TRANSLATION protein_coding stop - 3 104.0 0.0 2.0 0.0 0.0 0.0 3,-2 0.0017 4 -2.0 MINOR ENSMUSG00000049350 Zg16 ENSMUST00000205424 ENSMUSP00000145876 TRANSLATION protein_coding - CCDS21856.1 2 167.0 0.0 3.0 13.3 26.5 0.0 3,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000092473 Vmn1r180 ENSMUST00000173816 ENSMUSP00000134362 TRANSLATION protein_coding - CCDS20937.1 - 305.0 0.0 0.0 0.4 58.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000003429 Rps11 ENSMUST00000003521 ENSMUSP00000003521 TRANSLATION protein_coding - CCDS39947.1 1 158.0 0.0 4.41 33.9 229.1 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000003429 Rps11 ENSMUST00000209838 ENSMUSP00000147907 TRANSLATION protein_coding start - 5 135.0 0.0 3.75 0.0 186.0 0.0 -4,-5 0.0004 6 -2.0 MINOR ENSMUSG00000003429 Rps11 ENSMUST00000211725 ENSMUSP00000147630 TRANSLATION protein_coding - - 5 130.0 0.0 3.26 0.0 181.6 0.0 -4,-5 0.0 7 6.852 MINOR ENSMUSG00000003429 Rps11 ENSMUST00000211583 - NO_TRANSLATION retained_intron ENSMUSG00000040189 Odad1 ENSMUST00000210602 ENSMUSP00000147658 TRANSLATION protein_coding - - 1 136.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5673 1 0.0 ALTERNATIVE:2 ENSMUSG00000040189 Odad1 ENSMUST00000211628 - NO_TRANSLATION retained_intron ENSMUSG00000040189 Odad1 ENSMUST00000210039 ENSMUSP00000147338 TRANSLATION protein_coding - - 5 697.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.189 7 0.0 ALTERNATIVE:2 ENSMUSG00000040189 Odad1 ENSMUST00000210867 - NO_TRANSLATION retained_intron ENSMUSG00000040189 Odad1 ENSMUST00000038720 ENSMUSP00000042772 TRANSLATION protein_coding - CCDS21271.1 1 658.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.3487 7 0.0 PRINCIPAL:3 ENSMUSG00000040189 Odad1 ENSMUST00000211367 ENSMUSP00000148002 TRANSLATION protein_coding - - 1 134.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1478 1 0.0 ALTERNATIVE:2 ENSMUSG00000040189 Odad1 ENSMUST00000236631 - NO_TRANSLATION retained_intron ENSMUSG00000091594 Gm17067 ENSMUST00000249314 ENSMUSP00000159688 TRANSLATION protein_coding - - - 322.0 34.0 1.7 0.3 174.0 0.0 -4,-5 0.0793 - 13.26 MINOR ENSMUSG00000091594 Gm17067 ENSMUST00000166837 ENSMUSP00000128086 TRANSLATION protein_coding - - 5 354.0 34.0 1.8 0.3 247.4 0.0 -4,-5 0.8036 - 18.0 PRINCIPAL:1 ENSMUSG00000091594 Gm17067 ENSMUST00000249312 ENSMUSP00000159686 TRANSLATION protein_coding - - - 354.0 34.0 1.8 0.3 247.4 0.0 -4,-5 0.8036 - 18.0 PRINCIPAL:1 ENSMUSG00000091594 Gm17067 ENSMUST00000249313 ENSMUSP00000159687 TRANSLATION protein_coding - - - 322.0 34.0 1.7 0.3 174.0 0.0 -4,-5 0.0793 - 13.26 MINOR ENSMUSG00000025488 Cox8b ENSMUST00000026561 ENSMUSP00000026561 TRANSLATION protein_coding - CCDS21991.1 1 70.0 0.0 1.4 4.0 77.1 0.0 -4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030737 Slco2b1 ENSMUST00000137914 ENSMUSP00000115872 TRANSLATION protein_coding stop - 5 85.0 0.0 0.0 0.0 26.4 4.0 -4,-6 0.0038 2 -2.0 MINOR ENSMUSG00000030737 Slco2b1 ENSMUST00000107088 ENSMUSP00000102703 TRANSLATION protein_coding - CCDS57567.1 1 693.0 0.0 0.0 0.4 647.4 16.0 -4,-5 0.525 7 0.0 ALTERNATIVE:2 ENSMUSG00000030737 Slco2b1 ENSMUST00000208225 ENSMUSP00000146717 TRANSLATION protein_coding stop - 5 150.0 0.0 0.0 0.0 133.6 8.0 -4,-6 0.0038 2 -2.0 MINOR ENSMUSG00000030737 Slco2b1 ENSMUST00000207090 ENSMUSP00000147218 TRANSLATION protein_coding stop - 3 81.0 0.0 0.0 0.0 0.0 4.0 -4,-6 0.004 2 -2.0 MINOR ENSMUSG00000030737 Slco2b1 ENSMUST00000154295 ENSMUSP00000121002 TRANSLATION protein_coding start - 3 203.0 0.0 0.0 0.0 149.3 2.0 -4,-5 0.0027 1 -2.0 MINOR ENSMUSG00000030737 Slco2b1 ENSMUST00000208713 ENSMUSP00000147004 TRANSLATION protein_coding start - 5 112.0 0.0 0.0 0.0 142.3 8.0 -1,-4 0.0038 - -2.0 MINOR ENSMUSG00000030737 Slco2b1 ENSMUST00000145381 ENSMUSP00000123439 TRANSLATION protein_coding stop - 5 150.0 0.0 0.0 0.0 133.6 8.0 -4,-6 0.0038 2 -2.0 MINOR ENSMUSG00000030737 Slco2b1 ENSMUST00000032985 ENSMUSP00000032985 TRANSLATION protein_coding - CCDS21485.1 1 683.0 0.0 0.0 0.1 647.4 16.0 -4,-5 1.0 7 0.0 PRINCIPAL:2 ENSMUSG00000030737 Slco2b1 ENSMUST00000107086 ENSMUSP00000102701 TRANSLATION protein_coding - CCDS21485.1 1 683.0 0.0 0.0 0.1 647.4 16.0 -4,-5 1.0 7 0.0 PRINCIPAL:2 ENSMUSG00000073938 Or51ai2 ENSMUST00000098189 ENSMUSP00000095791 TRANSLATION protein_coding - CCDS21598.1 - 317.0 0.0 1.0 3.4 363.5 5.0 -3,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000073938 Or51ai2 ENSMUST00000214711 ENSMUSP00000149598 TRANSLATION protein_coding - CCDS21598.1 5 317.0 0.0 1.0 3.4 363.5 5.0 -3,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000073938 Or51ai2 ENSMUST00000214509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018995 Nars2 ENSMUST00000122835 ENSMUSP00000146034 TRANSLATION nonsense_mediated_decay start - 3 79.0 4.0 1.35 0.0 45.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018995 Nars2 ENSMUST00000150681 ENSMUSP00000146169 TRANSLATION nonsense_mediated_decay - - 5 53.0 1.0 1.396 0.0 36.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018995 Nars2 ENSMUST00000149204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018995 Nars2 ENSMUST00000107159 ENSMUSP00000102777 TRANSLATION protein_coding - - 5 391.0 6.0 7.392 2.3 276.2 0.0 -3,1 0.0437 4 5.736 MINOR ENSMUSG00000018995 Nars2 ENSMUST00000044466 ENSMUSP00000044937 TRANSLATION protein_coding - CCDS21454.1 1 477.0 9.0 9.656 20.7 389.8 0.0 -3,1 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000018995 Nars2 ENSMUST00000206109 - NO_TRANSLATION retained_intron ENSMUSG00000035064 Eef2k ENSMUST00000106489 ENSMUSP00000102098 TRANSLATION protein_coding - CCDS21796.1 1 724.0 21.0 8.15 20.7 216.2 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000035064 Eef2k ENSMUST00000106487 ENSMUSP00000102096 TRANSLATION protein_coding start - 3 140.0 0.0 2.75 0.0 8.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000035064 Eef2k ENSMUST00000106488 ENSMUSP00000102097 TRANSLATION protein_coding - CCDS21796.1 1 724.0 21.0 8.15 20.7 216.2 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000035064 Eef2k ENSMUST00000143279 ENSMUSP00000119567 TRANSLATION protein_coding stop - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035064 Eef2k ENSMUST00000125828 - NO_TRANSLATION retained_intron ENSMUSG00000035064 Eef2k ENSMUST00000128813 - NO_TRANSLATION retained_intron ENSMUSG00000035064 Eef2k ENSMUST00000143322 ENSMUSP00000115486 TRANSLATION protein_coding stop - 2 164.0 7.0 1.7 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000035064 Eef2k ENSMUST00000047875 ENSMUSP00000046595 TRANSLATION protein_coding - CCDS21796.1 1 724.0 21.0 8.15 20.7 216.2 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000035064 Eef2k ENSMUST00000146482 ENSMUSP00000114782 TRANSLATION protein_coding start - 5 185.0 0.0 3.0 0.0 21.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000090215 Trim34b ENSMUST00000106847 ENSMUSP00000102460 TRANSLATION protein_coding - CCDS57570.1 1 485.0 16.0 3.926 5.8 99.1 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000035354 Uvrag ENSMUST00000208502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035354 Uvrag ENSMUST00000208012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035354 Uvrag ENSMUST00000208992 ENSMUSP00000146640 TRANSLATION nonsense_mediated_decay - - 1 150.0 0.0 0.0 0.0 21.6 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000035354 Uvrag ENSMUST00000037968 ENSMUSP00000045297 TRANSLATION protein_coding - CCDS21476.1 1 698.0 0.0 0.0 2.2 86.8 0.0 -4,-7 1.0 18 7.0 PRINCIPAL:1 ENSMUSG00000035354 Uvrag ENSMUST00000207032 - NO_TRANSLATION retained_intron ENSMUSG00000035354 Uvrag ENSMUST00000208609 - NO_TRANSLATION retained_intron ENSMUSG00000035354 Uvrag ENSMUST00000207919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035354 Uvrag ENSMUST00000209123 ENSMUSP00000146336 TRANSLATION nonsense_mediated_decay start - 1 162.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030830 Itgal ENSMUST00000205695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030830 Itgal ENSMUST00000120857 ENSMUSP00000113396 TRANSLATION protein_coding - - 1 1201.0 17.0 18.096 0.0 289.3 1.0 4,-2 0.1331 14 10.994 MINOR ENSMUSG00000030830 Itgal ENSMUST00000117762 ENSMUSP00000113946 TRANSLATION protein_coding - CCDS57588.1 1 1161.0 17.0 19.096 0.4 310.4 1.0 4,-2 1.0 15 13.85 PRINCIPAL:4 ENSMUSG00000030830 Itgal ENSMUST00000106306 ENSMUSP00000101913 TRANSLATION protein_coding - CCDS57589.1 1 1162.0 17.0 19.171 0.4 307.0 1.0 4,-2 0.9375 15 14.0 ALTERNATIVE:2 ENSMUSG00000030830 Itgal ENSMUST00000118405 ENSMUSP00000112591 TRANSLATION protein_coding - - 1 765.0 17.0 10.235 0.0 203.4 1.0 -4,0 0.0105 8 7.428 MINOR ENSMUSG00000066129 Kndc1 ENSMUST00000121839 ENSMUSP00000113856 TRANSLATION protein_coding - - 2 572.0 0.0 0.84 0.0 40.9 0.0 -4,-5 0.0018 4 0.0 MINOR ENSMUSG00000066129 Kndc1 ENSMUST00000156941 - NO_TRANSLATION retained_intron ENSMUSG00000066129 Kndc1 ENSMUST00000210154 - NO_TRANSLATION retained_intron ENSMUSG00000066129 Kndc1 ENSMUST00000053445 ENSMUSP00000050586 TRANSLATION protein_coding - - 5 1742.0 0.0 4.2255 0.4 159.5 0.0 -4,-5 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000030680 Pagr1a ENSMUST00000206416 ENSMUSP00000146318 TRANSLATION protein_coding - - 3 135.0 0.0 0.0 0.0 35.7 0.0 -2,-3 0.0 - 0.0 MINOR ENSMUSG00000030680 Pagr1a ENSMUST00000162069 ENSMUSP00000123889 TRANSLATION protein_coding - - 3 91.0 0.0 0.0 0.0 79.8 0.0 -4,-5 0.0 1 0.594 MINOR ENSMUSG00000030680 Pagr1a ENSMUST00000200948 ENSMUSP00000144469 TRANSLATION protein_coding - CCDS21854.1 1 253.0 0.0 0.0 10.9 169.9 0.0 -2,-3 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000098132 Rassf10 ENSMUST00000182858 ENSMUSP00000138103 TRANSLATION protein_coding - CCDS59737.1 - 508.0 0.0 0.0 6.0 0.0 0.0 -4,-5 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000091638 Vmn1r113 ENSMUST00000173723 ENSMUSP00000133307 TRANSLATION protein_coding - CCDS59709.1 - 307.0 0.0 0.0 0.4 56.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000055652 Klhl25 ENSMUST00000171155 ENSMUSP00000133175 TRANSLATION protein_coding - CCDS21369.1 1 589.0 0.0 1.6 36.9 364.1 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000055652 Klhl25 ENSMUST00000206019 ENSMUSP00000146102 TRANSLATION protein_coding - CCDS21369.1 1 589.0 0.0 1.6 36.9 364.1 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000055652 Klhl25 ENSMUST00000205612 ENSMUSP00000146192 TRANSLATION protein_coding - - 1 284.0 0.0 0.4 0.0 166.2 0.0 -4,-5 0.0 4 1.5 MINOR ENSMUSG00000055652 Klhl25 ENSMUST00000206418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055652 Klhl25 ENSMUST00000205887 ENSMUSP00000145600 TRANSLATION protein_coding stop - 3 93.0 0.0 0.6 0.0 49.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000055652 Klhl25 ENSMUST00000092073 ENSMUSP00000089707 TRANSLATION protein_coding - CCDS21369.1 1 589.0 0.0 1.6 36.9 364.1 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000051768 Xrcc1 ENSMUST00000206620 - NO_TRANSLATION retained_intron ENSMUSG00000051768 Xrcc1 ENSMUST00000205804 - NO_TRANSLATION retained_intron ENSMUSG00000051768 Xrcc1 ENSMUST00000206889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051768 Xrcc1 ENSMUST00000063249 ENSMUSP00000070995 TRANSLATION protein_coding - CCDS20955.1 1 631.0 0.0 9.6 6.7 325.5 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000051768 Xrcc1 ENSMUST00000206429 - NO_TRANSLATION retained_intron ENSMUSG00000051768 Xrcc1 ENSMUST00000206538 - NO_TRANSLATION retained_intron ENSMUSG00000051768 Xrcc1 ENSMUST00000205561 - NO_TRANSLATION retained_intron ENSMUSG00000051768 Xrcc1 ENSMUST00000206153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051768 Xrcc1 ENSMUST00000206067 - NO_TRANSLATION retained_intron ENSMUSG00000051768 Xrcc1 ENSMUST00000205453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051768 Xrcc1 ENSMUST00000205575 - NO_TRANSLATION retained_intron ENSMUSG00000051768 Xrcc1 ENSMUST00000205564 - NO_TRANSLATION retained_intron ENSMUSG00000051768 Xrcc1 ENSMUST00000205573 ENSMUSP00000146105 TRANSLATION protein_coding - CCDS20955.1 1 631.0 0.0 9.6 6.7 325.5 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000040703 Cyp2s1 ENSMUST00000152560 - NO_TRANSLATION retained_intron ENSMUSG00000040703 Cyp2s1 ENSMUST00000043314 ENSMUSP00000041175 TRANSLATION protein_coding - CCDS20997.1 1 501.0 31.0 9.8 0.4 403.4 0.0 3,-2 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000040703 Cyp2s1 ENSMUST00000156714 ENSMUSP00000122264 TRANSLATION protein_coding stop - 5 90.0 1.0 2.08 0.0 44.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040703 Cyp2s1 ENSMUST00000108395 ENSMUSP00000104032 TRANSLATION protein_coding - - 1 448.0 29.0 8.965 0.0 355.4 0.0 3,-2 0.0205 10 12.12 MINOR ENSMUSG00000073971 Or52m1 ENSMUST00000214841 ENSMUSP00000150312 TRANSLATION protein_coding - CCDS21539.1 5 317.0 0.0 1.0 11.4 357.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073971 Or52m1 ENSMUST00000215995 ENSMUSP00000150338 TRANSLATION protein_coding - CCDS21539.1 5 317.0 0.0 1.0 11.4 357.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073971 Or52m1 ENSMUST00000098221 ENSMUSP00000095824 TRANSLATION protein_coding - CCDS21539.1 - 317.0 0.0 1.0 11.4 357.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044881 Coa4 ENSMUST00000120454 ENSMUSP00000114098 TRANSLATION protein_coding - CCDS40037.1 1 87.0 0.0 1.0 16.3 28.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000044881 Coa4 ENSMUST00000054310 ENSMUSP00000053727 TRANSLATION protein_coding - CCDS40037.1 1 87.0 0.0 1.0 16.3 28.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000044881 Coa4 ENSMUST00000208772 - NO_TRANSLATION retained_intron ENSMUSG00000030428 Ttyh1 ENSMUST00000205971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030428 Ttyh1 ENSMUST00000140637 - NO_TRANSLATION retained_intron ENSMUSG00000030428 Ttyh1 ENSMUST00000206987 ENSMUSP00000146170 TRANSLATION nonsense_mediated_decay - - 3 108.0 0.0 0.0 0.0 71.5 3.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000030428 Ttyh1 ENSMUST00000126971 - NO_TRANSLATION retained_intron ENSMUSG00000030428 Ttyh1 ENSMUST00000151959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030428 Ttyh1 ENSMUST00000148951 - NO_TRANSLATION retained_intron ENSMUSG00000030428 Ttyh1 ENSMUST00000032594 ENSMUSP00000032594 TRANSLATION nonsense_mediated_decay start - 1 103.0 0.0 0.0 0.0 51.9 3.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000030428 Ttyh1 ENSMUST00000132400 - NO_TRANSLATION retained_intron ENSMUSG00000030428 Ttyh1 ENSMUST00000128317 - NO_TRANSLATION retained_intron ENSMUSG00000030428 Ttyh1 ENSMUST00000134536 - NO_TRANSLATION retained_intron ENSMUSG00000030428 Ttyh1 ENSMUST00000130150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030428 Ttyh1 ENSMUST00000079415 ENSMUSP00000078384 TRANSLATION protein_coding - CCDS51970.1 1 460.0 0.0 0.0 0.0 540.9 10.0 -4,0 0.1438 4 5.298 MINOR ENSMUSG00000030428 Ttyh1 ENSMUST00000153673 ENSMUSP00000115623 TRANSLATION nonsense_mediated_decay - - 5 113.0 0.0 0.0 0.0 72.6 3.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000030428 Ttyh1 ENSMUST00000139789 - NO_TRANSLATION retained_intron ENSMUSG00000030428 Ttyh1 ENSMUST00000148760 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030428 Ttyh1 ENSMUST00000129423 ENSMUSP00000120182 TRANSLATION protein_coding - CCDS20730.1 1 450.0 0.0 0.0 14.5 552.6 10.0 -4,0 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000030428 Ttyh1 ENSMUST00000119661 ENSMUSP00000113937 TRANSLATION protein_coding - CCDS20730.1 1 450.0 0.0 0.0 14.5 552.6 10.0 -4,0 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000030428 Ttyh1 ENSMUST00000206869 ENSMUSP00000146131 TRANSLATION protein_coding - - 1 354.0 0.0 0.0 0.0 457.7 6.0 -4,-5 0.0032 3 0.306 MINOR ENSMUSG00000030870 Ubfd1 ENSMUST00000033158 ENSMUSP00000033158 TRANSLATION protein_coding - CCDS21808.1 1 368.0 0.0 1.6 0.0 49.2 0.0 -4,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000030870 Ubfd1 ENSMUST00000148060 - NO_TRANSLATION retained_intron ENSMUSG00000030870 Ubfd1 ENSMUST00000133390 - NO_TRANSLATION retained_intron ENSMUSG00000030870 Ubfd1 ENSMUST00000153640 ENSMUSP00000146254 TRANSLATION nonsense_mediated_decay start - 3 102.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000030870 Ubfd1 ENSMUST00000124733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004961 Syt5 ENSMUST00000065957 ENSMUSP00000070322 TRANSLATION protein_coding - CCDS20738.1 1 386.0 23.0 5.8 2.9 171.3 1.0 -4,-7 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000004961 Syt5 ENSMUST00000206933 ENSMUSP00000145980 TRANSLATION protein_coding stop - 5 105.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000004961 Syt5 ENSMUST00000206023 ENSMUSP00000145723 TRANSLATION protein_coding stop - 2 48.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0008 - -2.0 MINOR ENSMUSG00000066704 Cyp2b19 ENSMUST00000132315 - NO_TRANSLATION retained_intron ENSMUSG00000066704 Cyp2b19 ENSMUST00000077855 ENSMUSP00000077021 TRANSLATION protein_coding - CCDS21006.1 1 492.0 52.0 8.6 5.7 498.5 0.0 2,-3 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000066704 Cyp2b19 ENSMUST00000138018 - NO_TRANSLATION retained_intron ENSMUSG00000030689 Ino80e ENSMUST00000206349 ENSMUSP00000146297 TRANSLATION protein_coding - - 2 205.0 0.0 2.16 9.1 0.0 0.0 -4,-5 0.8388 2 8.358 ALTERNATIVE:1 ENSMUSG00000030689 Ino80e ENSMUST00000205619 ENSMUSP00000146097 TRANSLATION protein_coding start - 5 125.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0032 - -2.0 MINOR ENSMUSG00000030689 Ino80e ENSMUST00000144056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030689 Ino80e ENSMUST00000205958 ENSMUSP00000145764 TRANSLATION nonsense_mediated_decay start - 5 36.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.004 - -2.0 MINOR ENSMUSG00000030689 Ino80e ENSMUST00000154881 - NO_TRANSLATION retained_intron ENSMUSG00000030689 Ino80e ENSMUST00000205349 ENSMUSP00000145866 TRANSLATION protein_coding stop - 3 131.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0019 - -2.0 MINOR ENSMUSG00000030689 Ino80e ENSMUST00000050833 ENSMUSP00000049851 TRANSLATION protein_coding - CCDS21848.1 1 205.0 0.0 0.66 0.0 0.0 0.0 -3,-4 0.1128 2 1.836 MINOR ENSMUSG00000030689 Ino80e ENSMUST00000206090 ENSMUSP00000145964 TRANSLATION protein_coding start - 3 81.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0175 - -2.0 MINOR ENSMUSG00000030689 Ino80e ENSMUST00000129812 ENSMUSP00000114606 TRANSLATION protein_coding stop - 3 60.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0213 - -2.0 MINOR ENSMUSG00000030689 Ino80e ENSMUST00000125624 - NO_TRANSLATION retained_intron ENSMUSG00000030689 Ino80e ENSMUST00000132552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030689 Ino80e ENSMUST00000106342 ENSMUSP00000101949 TRANSLATION protein_coding - - 3 163.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0256 2 0.0 MINOR ENSMUSG00000030689 Ino80e ENSMUST00000106343 ENSMUSP00000101950 TRANSLATION protein_coding - - 1 244.0 0.0 2.16 11.3 0.0 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:4 ENSMUSG00000030689 Ino80e ENSMUST00000153764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030689 Ino80e ENSMUST00000206968 ENSMUSP00000145893 TRANSLATION protein_coding stop - 5 260.0 0.0 2.16 0.0 0.0 0.0 -4,-7 0.0393 1 -2.0 MINOR ENSMUSG00000090949 Vmn2r77 ENSMUST00000164996 ENSMUSP00000129540 TRANSLATION protein_coding - CCDS52301.1 5 854.0 4.0 2.542 0.4 364.3 8.0 1,-3 0.9511 - 12.0 PRINCIPAL:4 ENSMUSG00000090949 Vmn2r77 ENSMUST00000233167 ENSMUSP00000156425 TRANSLATION nonsense_mediated_decay - - - 75.0 0.0 0.0 0.0 0.0 1.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000090949 Vmn2r77 ENSMUST00000232688 ENSMUSP00000156969 TRANSLATION nonsense_mediated_decay - - - 66.0 0.0 0.0 0.0 0.0 1.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000090949 Vmn2r77 ENSMUST00000233099 ENSMUSP00000156630 TRANSLATION protein_coding - - - 851.0 4.0 2.542 0.4 364.3 8.0 0,-4 0.8644 - 12.0 ALTERNATIVE:2 ENSMUSG00000060240 Cend1 ENSMUST00000124444 ENSMUSP00000118591 TRANSLATION protein_coding - CCDS22012.1 1 149.0 0.0 0.0 6.9 231.3 1.0 -4,-6 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000060240 Cend1 ENSMUST00000137488 ENSMUSP00000123334 TRANSLATION protein_coding - CCDS22012.1 1 149.0 0.0 0.0 6.9 231.3 1.0 -4,-6 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000060240 Cend1 ENSMUST00000084436 ENSMUSP00000081476 TRANSLATION protein_coding - CCDS22012.1 5 149.0 0.0 0.0 6.9 231.3 1.0 -4,-6 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000091662 Vmn1r69 ENSMUST00000176707 ENSMUSP00000134833 TRANSLATION protein_coding - CCDS20793.1 2 319.0 0.0 0.25 0.1 106.7 8.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091662 Vmn1r69 ENSMUST00000226990 - NO_TRANSLATION retained_intron ENSMUSG00000091662 Vmn1r69 ENSMUST00000226228 ENSMUSP00000154076 TRANSLATION protein_coding - CCDS20793.1 - 319.0 0.0 0.25 0.1 106.7 8.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091662 Vmn1r69 ENSMUST00000226190 ENSMUSP00000153891 TRANSLATION protein_coding - CCDS20793.1 - 319.0 0.0 0.25 0.1 106.7 8.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091662 Vmn1r69 ENSMUST00000176284 ENSMUSP00000134993 TRANSLATION protein_coding - CCDS20793.1 2 319.0 0.0 0.25 0.1 106.7 8.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091662 Vmn1r69 ENSMUST00000228478 ENSMUSP00000154418 TRANSLATION protein_coding - - - 240.0 0.0 0.0 0.0 104.0 6.0 -4,-7 0.0233 - 5.838 MINOR ENSMUSG00000091662 Vmn1r69 ENSMUST00000228296 ENSMUSP00000154641 TRANSLATION protein_coding - - - 240.0 0.0 0.0 0.0 104.0 6.0 -4,-7 0.0233 - 5.838 MINOR ENSMUSG00000091662 Vmn1r69 ENSMUST00000226160 ENSMUSP00000154435 TRANSLATION protein_coding - CCDS20793.1 - 319.0 0.0 0.25 0.1 106.7 8.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091662 Vmn1r69 ENSMUST00000227853 ENSMUSP00000154231 TRANSLATION protein_coding - - - 240.0 0.0 0.0 0.0 104.0 6.0 -4,-7 0.0233 - 5.838 MINOR ENSMUSG00000091662 Vmn1r69 ENSMUST00000163658 ENSMUSP00000129646 TRANSLATION protein_coding - CCDS20793.1 - 319.0 0.0 0.25 0.1 106.7 8.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091662 Vmn1r69 ENSMUST00000228638 ENSMUSP00000154473 TRANSLATION protein_coding - - - 240.0 0.0 0.0 0.0 104.0 6.0 -4,-7 0.0233 - 5.838 MINOR ENSMUSG00000099481 Xndc1 ENSMUST00000106950 ENSMUSP00000102563 TRANSLATION protein_coding,RT - CCDS72002.1 1 405.0 8.0 3.5 3.9 181.3 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000099481 Xndc1 ENSMUST00000094130 ENSMUSP00000091680 TRANSLATION protein_coding - CCDS72002.1 1 405.0 8.0 3.5 3.9 181.3 0.0 -4,-6 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000099481 Xndc1 ENSMUST00000141646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000099481 Xndc1 ENSMUST00000153176 - NO_TRANSLATION retained_intron ENSMUSG00000099481 Xndc1 ENSMUST00000143839 - NO_TRANSLATION retained_intron ENSMUSG00000099481 Xndc1 ENSMUST00000146450 ENSMUSP00000117300 TRANSLATION protein_coding stop - 3 158.0 0.0 3.5 0.0 181.3 0.0 -4,-6 0.0189 1 -2.0 MINOR ENSMUSG00000099481 Xndc1 ENSMUST00000140395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000099481 Xndc1 ENSMUST00000125197 - NO_TRANSLATION retained_intron ENSMUSG00000099481 Xndc1 ENSMUST00000142629 ENSMUSP00000121475 TRANSLATION nonsense_mediated_decay,RT start - 1 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052572 Dlg2 ENSMUST00000146563 - NO_TRANSLATION retained_intron ENSMUSG00000052572 Dlg2 ENSMUST00000231777 ENSMUSP00000155862 TRANSLATION protein_coding - - - 994.0 14.0 16.64 5.3 726.4 0.0 -4,-5 1.0 30 19.246 PRINCIPAL:1 ENSMUSG00000052572 Dlg2 ENSMUST00000238619 ENSMUSP00000158731 TRANSLATION protein_coding - - - 887.0 14.0 15.31 5.8 617.8 0.0 -4,-6 0.387 28 10.734 MINOR ENSMUSG00000052572 Dlg2 ENSMUST00000138389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052572 Dlg2 ENSMUST00000207891 - NO_TRANSLATION retained_intron ENSMUSG00000052572 Dlg2 ENSMUST00000208377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052572 Dlg2 ENSMUST00000238608 ENSMUSP00000158616 TRANSLATION protein_coding - - - 901.0 14.0 15.51 0.9 617.8 0.0 -4,-6 0.0746 28 9.738 MINOR ENSMUSG00000052572 Dlg2 ENSMUST00000152139 - NO_TRANSLATION retained_intron ENSMUSG00000052572 Dlg2 ENSMUST00000208919 ENSMUSP00000159178 TRANSLATION protein_coding stop - 3 47.0 0.0 1.33 0.0 59.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000052572 Dlg2 ENSMUST00000107196 ENSMUSP00000102814 TRANSLATION protein_coding - CCDS40021.1 1 852.0 14.0 14.376 3.5 635.6 0.0 -4,-7 0.3292 27 8.746 MINOR ENSMUSG00000052572 Dlg2 ENSMUST00000207798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052572 Dlg2 ENSMUST00000209170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052572 Dlg2 ENSMUST00000238788 - NO_TRANSLATION retained_intron ENSMUSG00000052572 Dlg2 ENSMUST00000129818 - NO_TRANSLATION retained_intron ENSMUSG00000052572 Dlg2 ENSMUST00000238467 ENSMUSP00000158695 TRANSLATION protein_coding - - - 919.0 14.0 15.49 7.9 617.8 0.0 -4,-6 0.5949 27 11.702 MINOR ENSMUSG00000052572 Dlg2 ENSMUST00000074273 ENSMUSP00000073885 TRANSLATION protein_coding - - 5 870.0 14.0 14.356 4.5 635.6 0.0 -4,-7 0.3756 26 9.0 MINOR ENSMUSG00000052572 Dlg2 ENSMUST00000135581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052572 Dlg2 ENSMUST00000207095 - NO_TRANSLATION retained_intron ENSMUSG00000052572 Dlg2 ENSMUST00000128592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052572 Dlg2 ENSMUST00000107193 ENSMUSP00000102811 TRANSLATION protein_coding - - 5 755.0 14.0 14.81 0.0 557.8 0.0 -4,-7 0.0104 23 8.34 MINOR ENSMUSG00000052572 Dlg2 ENSMUST00000239136 ENSMUSP00000159135 TRANSLATION protein_coding stop - - 78.0 0.0 1.5 0.0 57.6 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000052572 Dlg2 ENSMUST00000098308 ENSMUSP00000095910 TRANSLATION protein_coding - CCDS57562.1 1 481.0 14.0 9.79 0.0 329.4 0.0 -4,-6 0.0093 16 6.0 MINOR ENSMUSG00000006313 Upk1a ENSMUST00000006476 ENSMUSP00000006476 TRANSLATION protein_coding - CCDS21103.1 1 257.0 0.0 5.75 8.8 95.0 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000095363 Gm4567 ENSMUST00000178591 ENSMUSP00000136041 TRANSLATION protein_coding - CCDS57519.1 - 301.0 17.0 1.0 0.0 242.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095363 Gm4567 ENSMUST00000190554 ENSMUSP00000140310 TRANSLATION protein_coding - CCDS57519.1 1 301.0 17.0 1.0 0.0 242.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000091474 2610021A01Rik ENSMUST00000163475 ENSMUSP00000127760 TRANSLATION protein_coding - - 1 834.0 60.0 2.5 0.0 412.0 0.0 -4,-5 0.8379 - 18.0 PRINCIPAL:1 ENSMUSG00000091474 2610021A01Rik ENSMUST00000206985 - NO_TRANSLATION retained_intron ENSMUSG00000091474 2610021A01Rik ENSMUST00000206757 - NO_TRANSLATION retained_intron ENSMUSG00000091474 2610021A01Rik ENSMUST00000205721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091474 2610021A01Rik ENSMUST00000205587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091474 2610021A01Rik ENSMUST00000205433 ENSMUSP00000146223 TRANSLATION protein_coding stop - 2 71.0 0.0 1.5 0.0 87.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070815 Vmn1r87 ENSMUST00000094827 ENSMUSP00000092422 TRANSLATION protein_coding - CCDS20828.1 - 295.0 0.0 0.0 0.1 120.0 4.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070815 Vmn1r87 ENSMUST00000211249 ENSMUSP00000148010 TRANSLATION protein_coding - CCDS20828.1 3 295.0 0.0 0.0 0.1 120.0 4.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070815 Vmn1r87 ENSMUST00000228800 ENSMUSP00000154184 TRANSLATION protein_coding - CCDS20828.1 - 295.0 0.0 0.0 0.1 120.0 4.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070815 Vmn1r87 ENSMUST00000227443 ENSMUSP00000153894 TRANSLATION protein_coding - CCDS20828.1 - 295.0 0.0 0.0 0.1 120.0 4.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030780 Rusf1 ENSMUST00000137677 ENSMUSP00000117520 TRANSLATION protein_coding start - 3 83.0 0.0 0.0 0.0 64.3 2.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030780 Rusf1 ENSMUST00000139452 - NO_TRANSLATION retained_intron ENSMUSG00000030780 Rusf1 ENSMUST00000033044 ENSMUSP00000033044 TRANSLATION protein_coding - CCDS21895.1 1 466.0 0.0 0.0 7.0 314.1 4.0 -4,-6 1.0 11 8.0 PRINCIPAL:1 ENSMUSG00000030780 Rusf1 ENSMUST00000154003 - NO_TRANSLATION retained_intron ENSMUSG00000030780 Rusf1 ENSMUST00000155177 - NO_TRANSLATION retained_intron ENSMUSG00000030780 Rusf1 ENSMUST00000147091 - NO_TRANSLATION retained_intron ENSMUSG00000030780 Rusf1 ENSMUST00000126263 ENSMUSP00000114673 TRANSLATION nonsense_mediated_decay - - 1 347.0 0.0 0.0 0.0 314.1 4.0 -4,-6 0.0655 6 -2.0 MINOR ENSMUSG00000030780 Rusf1 ENSMUST00000124216 - NO_TRANSLATION retained_intron ENSMUSG00000057596 Trim30d ENSMUST00000071069 ENSMUSP00000065020 TRANSLATION protein_coding - CCDS52347.1 1 347.0 0.0 4.188 0.1 31.2 0.0 -4,-5 0.0164 1 5.478 MINOR ENSMUSG00000057596 Trim30d ENSMUST00000141063 ENSMUSP00000115684 TRANSLATION protein_coding start/stop - 3 212.0 0.0 1.958 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057596 Trim30d ENSMUST00000033211 ENSMUSP00000033211 TRANSLATION protein_coding - CCDS40069.1 1 497.0 16.0 5.318 0.4 102.2 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000025466 Fuom ENSMUST00000026539 ENSMUSP00000026539 TRANSLATION protein_coding - CCDS40173.1 1 153.0 10.0 4.91 7.1 139.0 0.0 -3,-6 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000025466 Fuom ENSMUST00000120034 ENSMUSP00000112429 TRANSLATION protein_coding - - 3 134.0 7.0 4.16 1.0 111.7 0.0 -3,-6 0.0356 3 12.864 MINOR ENSMUSG00000025466 Fuom ENSMUST00000143197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025466 Fuom ENSMUST00000128527 ENSMUSP00000118717 TRANSLATION protein_coding start - 1 109.0 5.0 3.113 0.0 68.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025466 Fuom ENSMUST00000211677 ENSMUSP00000148261 TRANSLATION nonsense_mediated_decay start - 3 55.0 4.0 1.58 0.0 49.3 0.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000025466 Fuom ENSMUST00000121115 ENSMUSP00000112970 TRANSLATION protein_coding - - 1 127.0 5.0 3.41 0.0 80.2 0.0 -3,-6 0.0 2 8.136 MINOR ENSMUSG00000025466 Fuom ENSMUST00000138197 - NO_TRANSLATION retained_intron ENSMUSG00000025466 Fuom ENSMUST00000132582 - NO_TRANSLATION retained_intron ENSMUSG00000025466 Fuom ENSMUST00000155777 - NO_TRANSLATION retained_intron ENSMUSG00000025466 Fuom ENSMUST00000133834 - NO_TRANSLATION retained_intron ENSMUSG00000025466 Fuom ENSMUST00000147713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025466 Fuom ENSMUST00000142105 ENSMUSP00000115799 TRANSLATION protein_coding start - 3 156.0 7.0 4.16 0.0 112.7 0.0 -3,-6 0.0128 3 -2.0 MINOR ENSMUSG00000025466 Fuom ENSMUST00000148716 ENSMUSP00000120353 TRANSLATION nonsense_mediated_decay - - 1 133.0 7.0 4.16 1.0 111.7 0.0 -3,-6 0.0356 3 -2.0 MINOR ENSMUSG00000025466 Fuom ENSMUST00000125421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051314 Ffar2 ENSMUST00000186534 ENSMUSP00000140215 TRANSLATION protein_coding stop - 2 142.0 0.0 0.93 0.0 68.6 6.0 -1,-4 0.0037 1 -2.0 MINOR ENSMUSG00000051314 Ffar2 ENSMUST00000168528 ENSMUSP00000129398 TRANSLATION protein_coding - CCDS21111.1 1 330.0 0.0 1.698 9.9 95.7 9.0 -1,-4 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000051314 Ffar2 ENSMUST00000186339 ENSMUSP00000140493 TRANSLATION protein_coding stop - 2 182.0 0.0 1.298 0.0 77.2 7.0 -1,-4 0.0042 1 -2.0 MINOR ENSMUSG00000051314 Ffar2 ENSMUST00000186059 ENSMUSP00000140484 TRANSLATION protein_coding stop - 2 133.0 0.0 0.6 0.0 61.7 5.0 -1,-4 0.0037 1 -2.0 MINOR ENSMUSG00000051314 Ffar2 ENSMUST00000053156 ENSMUSP00000052600 TRANSLATION protein_coding - CCDS21111.1 1 330.0 0.0 1.698 9.9 95.7 9.0 -1,-4 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000051314 Ffar2 ENSMUST00000163504 ENSMUSP00000127758 TRANSLATION protein_coding - CCDS21111.1 2 330.0 0.0 1.698 9.9 95.7 9.0 -1,-4 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000109655 Gm29735 ENSMUST00000209599 ENSMUSP00000148147 TRANSLATION protein_coding - - - 219.0 0.0 0.0 0.0 44.5 0.0 -4,-5 0.7125 - 6.0 PRINCIPAL:1 ENSMUSG00000066268 Or51a5 ENSMUST00000084811 ENSMUSP00000081872 TRANSLATION protein_coding - CCDS21561.1 - 317.0 0.0 1.0 0.0 368.8 6.0 -4,-5 0.4169 - 12.0 MINOR ENSMUSG00000066268 Or51a5 ENSMUST00000213281 ENSMUSP00000150082 TRANSLATION protein_coding - - 5 313.0 0.0 1.0 12.4 368.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066268 Or51a5 ENSMUST00000215304 ENSMUSP00000149226 TRANSLATION protein_coding - - 5 313.0 0.0 1.0 12.4 368.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066268 Or51a5 ENSMUST00000211075 ENSMUSP00000147883 TRANSLATION protein_coding - - 5 313.0 0.0 1.0 12.4 368.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046378 Asphd1 ENSMUST00000106339 ENSMUSP00000101946 TRANSLATION protein_coding - CCDS40134.1 1 109.0 0.0 1.9 1.0 113.3 0.0 -4,-1 0.1556 1 10.608 MINOR ENSMUSG00000046378 Asphd1 ENSMUST00000052937 ENSMUSP00000049848 TRANSLATION protein_coding - CCDS40134.1 1 109.0 0.0 1.9 1.0 113.3 0.0 -4,-1 0.1556 1 10.608 MINOR ENSMUSG00000046378 Asphd1 ENSMUST00000106340 ENSMUSP00000101947 TRANSLATION protein_coding - CCDS85417.1 1 360.0 0.0 1.9 5.8 136.5 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000042797 Aqp11 ENSMUST00000205784 - NO_TRANSLATION retained_intron ENSMUSG00000042797 Aqp11 ENSMUST00000084986 ENSMUSP00000082054 TRANSLATION protein_coding start - 1 216.0 0.0 1.75 0.0 0.0 4.0 4,-1 0.0069 1 -2.0 MINOR ENSMUSG00000042797 Aqp11 ENSMUST00000206389 ENSMUSP00000146215 TRANSLATION protein_coding - CCDS21463.1 1 271.0 0.0 3.0 9.1 32.6 5.0 -3,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000042797 Aqp11 ENSMUST00000205932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042797 Aqp11 ENSMUST00000205737 - NO_TRANSLATION retained_intron ENSMUSG00000030532 Hddc3 ENSMUST00000205768 ENSMUSP00000145903 TRANSLATION nonsense_mediated_decay start - 3 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030532 Hddc3 ENSMUST00000206559 ENSMUSP00000146222 TRANSLATION nonsense_mediated_decay start - 3 27.0 0.0 0.33 0.0 0.0 0.0 -4,-6 0.0003 - -2.0 MINOR ENSMUSG00000030532 Hddc3 ENSMUST00000032747 ENSMUSP00000032747 TRANSLATION protein_coding - CCDS21396.1 1 179.0 4.0 3.99 28.2 26.0 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000030532 Hddc3 ENSMUST00000206089 ENSMUSP00000145996 TRANSLATION protein_coding start - 3 69.0 1.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030532 Hddc3 ENSMUST00000206122 ENSMUSP00000145537 TRANSLATION protein_coding - - 3 146.0 4.0 3.122 0.0 26.0 0.0 -4,-5 0.0021 1 14.266 MINOR ENSMUSG00000030532 Hddc3 ENSMUST00000205531 ENSMUSP00000145594 TRANSLATION nonsense_mediated_decay start - 3 89.0 1.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030532 Hddc3 ENSMUST00000205744 ENSMUSP00000145645 TRANSLATION nonsense_mediated_decay - - 5 91.0 1.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030532 Hddc3 ENSMUST00000206074 ENSMUSP00000146252 TRANSLATION protein_coding - - 2 153.0 4.0 2.99 0.0 26.0 0.0 -4,-5 0.0021 1 14.002 MINOR ENSMUSG00000030532 Hddc3 ENSMUST00000205448 ENSMUSP00000145745 TRANSLATION protein_coding start - 3 74.0 1.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030532 Hddc3 ENSMUST00000206480 ENSMUSP00000145686 TRANSLATION protein_coding - - 2 143.0 4.0 2.99 1.1 26.0 0.0 -4,-5 0.0615 1 14.018 MINOR ENSMUSG00000095901 Or13a24 ENSMUST00000210973 ENSMUSP00000147315 TRANSLATION protein_coding - CCDS21980.1 5 310.0 0.0 1.0 4.5 168.9 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095901 Or13a24 ENSMUST00000084457 ENSMUSP00000081495 TRANSLATION protein_coding - CCDS21980.1 - 310.0 0.0 1.0 4.5 168.9 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030652 Coq7 ENSMUST00000207046 - NO_TRANSLATION retained_intron ENSMUSG00000030652 Coq7 ENSMUST00000209146 ENSMUSP00000146797 TRANSLATION protein_coding - - 3 222.0 6.0 3.87 0.0 221.6 0.0 -4,0 0.014 6 14.64 MINOR ENSMUSG00000030652 Coq7 ENSMUST00000127700 - NO_TRANSLATION retained_intron ENSMUSG00000030652 Coq7 ENSMUST00000032887 ENSMUSP00000032887 TRANSLATION protein_coding - CCDS21771.1 1 217.0 6.0 4.58 9.9 253.9 0.0 -4,0 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000030652 Coq7 ENSMUST00000098090 ENSMUSP00000095695 TRANSLATION protein_coding - CCDS80794.1 1 337.0 6.0 3.75 0.0 219.9 0.0 -4,0 0.0114 6 14.298 MINOR ENSMUSG00000038650 Rnh1 ENSMUST00000106033 ENSMUSP00000101651 TRANSLATION protein_coding - CCDS22002.1 1 456.0 0.0 9.25 6.3 126.5 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000038650 Rnh1 ENSMUST00000210979 ENSMUSP00000147718 TRANSLATION protein_coding stop - 3 120.0 0.0 2.75 0.0 12.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000038650 Rnh1 ENSMUST00000167493 ENSMUSP00000133061 TRANSLATION protein_coding - CCDS22002.1 1 456.0 0.0 9.25 6.3 126.5 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000038650 Rnh1 ENSMUST00000209378 ENSMUSP00000147511 TRANSLATION protein_coding stop - 3 199.0 0.0 4.5 0.0 34.4 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000038650 Rnh1 ENSMUST00000210314 ENSMUSP00000147928 TRANSLATION protein_coding - CCDS85455.1 1 492.0 0.0 9.25 0.4 126.5 0.0 -4,0 0.3047 21 12.0 MINOR ENSMUSG00000030897 Cnga4 ENSMUST00000210344 ENSMUSP00000147387 TRANSLATION protein_coding - - 1 472.0 15.0 3.0 0.0 202.6 2.0 2,-2 0.0068 - 11.262 MINOR ENSMUSG00000030897 Cnga4 ENSMUST00000033187 ENSMUSP00000033187 TRANSLATION protein_coding - CCDS21650.1 1 575.0 15.0 5.5 5.5 231.6 3.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000054065 Pkp3 ENSMUST00000160869 ENSMUSP00000124013 TRANSLATION nonsense_mediated_decay - - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000054065 Pkp3 ENSMUST00000160615 - NO_TRANSLATION retained_intron ENSMUSG00000054065 Pkp3 ENSMUST00000160403 - NO_TRANSLATION retained_intron ENSMUSG00000054065 Pkp3 ENSMUST00000159253 - NO_TRANSLATION retained_intron ENSMUSG00000054065 Pkp3 ENSMUST00000066873 ENSMUSP00000069961 TRANSLATION protein_coding - CCDS21999.1 1 797.0 0.0 4.773 4.0 26.2 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000054065 Pkp3 ENSMUST00000163041 ENSMUSP00000124434 TRANSLATION protein_coding stop - 2 215.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.001 6 -2.0 MINOR ENSMUSG00000054065 Pkp3 ENSMUST00000159375 ENSMUSP00000124572 TRANSLATION protein_coding stop - 2 56.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 1 -2.0 MINOR ENSMUSG00000054065 Pkp3 ENSMUST00000106039 ENSMUSP00000101654 TRANSLATION protein_coding - CCDS52437.1 1 822.0 0.0 4.773 0.4 26.2 0.0 -4,-7 0.3986 22 12.0 MINOR ENSMUSG00000054065 Pkp3 ENSMUST00000161142 - NO_TRANSLATION retained_intron ENSMUSG00000035004 Igsf6 ENSMUST00000047194 ENSMUSP00000039059 TRANSLATION protein_coding - CCDS21801.1 1 237.0 0.0 2.25 3.0 0.0 0.0 -2,-7 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000078786 Actmap ENSMUST00000123108 ENSMUSP00000122238 TRANSLATION protein_coding start - 1 134.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.0017 3 -2.0 MINOR ENSMUSG00000078786 Actmap ENSMUST00000108379 ENSMUSP00000104016 TRANSLATION protein_coding - CCDS71921.1 1 336.0 0.0 5.7 0.0 0.0 0.0 -4,-6 0.1522 3 4.5 MINOR ENSMUSG00000078786 Actmap ENSMUST00000155931 ENSMUSP00000123290 TRANSLATION protein_coding start - 1 296.0 0.0 3.8 0.0 0.0 0.0 -4,-6 0.0169 1 -2.0 MINOR ENSMUSG00000078786 Actmap ENSMUST00000179391 ENSMUSP00000137189 TRANSLATION protein_coding - CCDS57529.1 5 361.0 0.0 6.45 0.1 0.0 0.0 -4,-6 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000007891 Ctsd ENSMUST00000151120 ENSMUSP00000121203 TRANSLATION protein_coding - CCDS22029.1 1 410.0 5.0 7.73 0.1 436.6 0.0 4,-1 1.0 14 17.0 PRINCIPAL:1 ENSMUSG00000007891 Ctsd ENSMUST00000066401 ENSMUSP00000063904 TRANSLATION protein_coding - - 1 404.0 5.0 7.4 0.1 414.2 0.0 4,-1 0.1347 13 14.996 MINOR ENSMUSG00000007891 Ctsd ENSMUST00000153679 - NO_TRANSLATION retained_intron ENSMUSG00000096152 Vmn1r240 ENSMUST00000079099 ENSMUSP00000078103 TRANSLATION protein_coding - CCDS52067.1 - 307.0 0.0 0.0 0.4 56.2 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000059087 Or2ag16 ENSMUST00000216255 ENSMUSP00000149305 TRANSLATION protein_coding - CCDS21669.1 5 311.0 0.0 1.0 6.7 168.0 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059087 Or2ag16 ENSMUST00000214306 ENSMUSP00000149201 TRANSLATION protein_coding - CCDS21669.1 5 311.0 0.0 1.0 6.7 168.0 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059087 Or2ag16 ENSMUST00000215892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059087 Or2ag16 ENSMUST00000074981 ENSMUSP00000074509 TRANSLATION protein_coding - CCDS21669.1 - 311.0 0.0 1.0 6.7 168.0 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000074227 Spint2 ENSMUST00000098604 ENSMUSP00000096204 TRANSLATION protein_coding - CCDS39870.1 1 252.0 0.0 2.53 6.8 126.9 1.0 2,-3 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000074227 Spint2 ENSMUST00000207601 ENSMUSP00000146580 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.23 0.0 0.0 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000074227 Spint2 ENSMUST00000108236 ENSMUSP00000103871 TRANSLATION protein_coding - CCDS39869.1 1 195.0 0.0 1.53 2.1 61.0 1.0 1,-2 0.0686 4 6.056 MINOR ENSMUSG00000074227 Spint2 ENSMUST00000208585 - NO_TRANSLATION retained_intron ENSMUSG00000058662 Or52a5b ENSMUST00000106878 ENSMUSP00000102491 TRANSLATION protein_coding - CCDS21590.1 5 316.0 0.0 1.0 11.0 335.6 0.0 -3,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045659 Plekha7 ENSMUST00000182834 ENSMUSP00000138257 TRANSLATION protein_coding - CCDS85396.1 1 1220.0 9.0 3.96 3.2 66.6 0.0 -4,-7 0.4688 26 10.494 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000214700 ENSMUSP00000151060 TRANSLATION nonsense_mediated_decay start - 5 98.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000216517 ENSMUSP00000148936 TRANSLATION protein_coding stop - 5 867.0 9.0 5.135 0.0 95.8 0.0 -4,-5 0.0699 16 -2.0 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000182443 ENSMUSP00000145894 TRANSLATION protein_coding start - 1 1212.0 9.0 3.63 0.0 66.6 0.0 -4,-5 0.0405 26 -2.0 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000183057 ENSMUSP00000138490 TRANSLATION protein_coding stop - 3 176.0 8.0 3.13 0.0 69.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000183281 ENSMUSP00000138126 TRANSLATION protein_coding start/stop - 3 207.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0007 5 -2.0 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000182693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045659 Plekha7 ENSMUST00000181981 ENSMUSP00000138766 TRANSLATION protein_coding - CCDS80791.1 1 1013.0 9.0 3.63 1.0 66.6 0.0 -4,-7 0.0907 21 8.988 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000182312 - NO_TRANSLATION retained_intron ENSMUSG00000045659 Plekha7 ENSMUST00000181998 ENSMUSP00000138575 TRANSLATION protein_coding - CCDS85397.1 1 1266.0 9.0 5.135 3.6 95.8 0.0 -4,-5 1.0 28 15.0 PRINCIPAL:2 ENSMUSG00000045659 Plekha7 ENSMUST00000182549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045659 Plekha7 ENSMUST00000183308 - NO_TRANSLATION retained_intron ENSMUSG00000045659 Plekha7 ENSMUST00000217046 ENSMUSP00000150646 TRANSLATION protein_coding start - 5 124.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000182487 ENSMUSP00000138214 TRANSLATION protein_coding - - 5 1118.0 9.0 5.135 1.3 95.8 0.0 -4,-5 0.3124 25 14.115 ALTERNATIVE:2 ENSMUSG00000045659 Plekha7 ENSMUST00000084664 ENSMUSP00000081714 TRANSLATION protein_coding - CCDS40099.1 1 1030.0 1.0 1.0 0.0 0.0 0.0 -4,-6 0.0503 23 0.666 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000206097 - NO_TRANSLATION retained_intron ENSMUSG00000045659 Plekha7 ENSMUST00000206662 ENSMUSP00000145800 TRANSLATION nonsense_mediated_decay start - 5 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000182511 ENSMUSP00000138544 TRANSLATION protein_coding - CCDS85395.1 2 1056.0 9.0 3.96 0.0 66.6 0.0 -4,-2 0.0489 23 9.648 MINOR ENSMUSG00000045659 Plekha7 ENSMUST00000205446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045659 Plekha7 ENSMUST00000182890 - NO_TRANSLATION retained_intron ENSMUSG00000043073 Usp17le ENSMUST00000211384 ENSMUSP00000147776 TRANSLATION protein_coding - CCDS85368.1 1 540.0 8.0 0.6 0.0 174.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000016626 Nlrp14 ENSMUST00000142623 ENSMUSP00000145427 TRANSLATION protein_coding - - 1 334.0 0.0 4.598 0.0 63.7 0.0 -4,-6 0.0 - 3.6 MINOR ENSMUSG00000016626 Nlrp14 ENSMUST00000084763 ENSMUSP00000081819 TRANSLATION protein_coding - CCDS21688.1 1 993.0 6.0 5.798 0.3 198.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000037166 Ppp1r14a ENSMUST00000207714 ENSMUSP00000146684 TRANSLATION protein_coding - - 3 168.0 0.0 2.08 0.0 166.3 0.0 -4,0 0.0 2 8.67 MINOR ENSMUSG00000037166 Ppp1r14a ENSMUST00000048187 ENSMUSP00000035642 TRANSLATION protein_coding - CCDS21070.1 1 147.0 0.0 2.68 8.9 199.4 0.0 -4,0 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000030519 Apba2 ENSMUST00000032732 ENSMUSP00000032732 TRANSLATION protein_coding - CCDS21335.1 1 750.0 0.0 7.5 16.3 273.4 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000030519 Apba2 ENSMUST00000205604 ENSMUSP00000146279 TRANSLATION protein_coding stop - 2 102.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000030519 Apba2 ENSMUST00000206246 ENSMUSP00000146038 TRANSLATION protein_coding - - 5 738.0 0.0 7.0 13.0 262.8 0.0 -4,-2 0.7601 8 13.498 MINOR ENSMUSG00000030519 Apba2 ENSMUST00000206061 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030519 Apba2 ENSMUST00000205613 ENSMUSP00000146269 TRANSLATION protein_coding stop - 3 81.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000030519 Apba2 ENSMUST00000205551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030519 Apba2 ENSMUST00000206630 ENSMUSP00000146108 TRANSLATION protein_coding start - 3 79.0 0.0 2.25 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000035901 Dennd5a ENSMUST00000151923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035901 Dennd5a ENSMUST00000156858 - NO_TRANSLATION retained_intron ENSMUSG00000035901 Dennd5a ENSMUST00000080437 ENSMUSP00000079295 TRANSLATION protein_coding - CCDS21741.1 1 1287.0 0.0 6.1625 4.4 503.3 0.0 -4,-6 1.0 15 10.0 PRINCIPAL:4 ENSMUSG00000035901 Dennd5a ENSMUST00000139579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035901 Dennd5a ENSMUST00000106722 ENSMUSP00000102333 TRANSLATION protein_coding - CCDS80781.1 1 1263.0 0.0 6.1625 3.3 503.3 0.0 -4,-6 0.8745 15 9.352 ALTERNATIVE:2 ENSMUSG00000035901 Dennd5a ENSMUST00000154002 - NO_TRANSLATION retained_intron ENSMUSG00000035901 Dennd5a ENSMUST00000134331 - NO_TRANSLATION retained_intron ENSMUSG00000035901 Dennd5a ENSMUST00000130354 - NO_TRANSLATION retained_intron ENSMUSG00000073900 Or2ag20 ENSMUST00000217164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073900 Or2ag20 ENSMUST00000217204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073900 Or2ag20 ENSMUST00000098141 ENSMUSP00000095745 TRANSLATION protein_coding - CCDS21675.1 - 315.0 0.0 1.0 7.3 164.1 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073900 Or2ag20 ENSMUST00000080925 ENSMUSP00000079726 TRANSLATION protein_coding - CCDS21675.1 5 315.0 0.0 1.0 7.3 164.1 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050605 Zfp61 ENSMUST00000206535 - NO_TRANSLATION retained_intron ENSMUSG00000050605 Zfp61 ENSMUST00000138924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050605 Zfp61 ENSMUST00000138619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050605 Zfp61 ENSMUST00000165241 ENSMUSP00000132551 TRANSLATION protein_coding - CCDS39829.1 5 555.0 36.0 2.0 0.0 258.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000050605 Zfp61 ENSMUST00000137342 - NO_TRANSLATION retained_intron ENSMUSG00000050605 Zfp61 ENSMUST00000077780 ENSMUSP00000076954 TRANSLATION protein_coding - CCDS39829.1 1 555.0 36.0 2.0 0.0 258.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000050605 Zfp61 ENSMUST00000145131 ENSMUSP00000117077 TRANSLATION protein_coding stop - 3 157.0 0.0 1.0 0.0 75.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050605 Zfp61 ENSMUST00000128421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050605 Zfp61 ENSMUST00000139811 - NO_TRANSLATION retained_intron ENSMUSG00000045132 Or51v14 ENSMUST00000217603 ENSMUSP00000148869 TRANSLATION nonsense_mediated_decay - CCDS21582.1 5 313.0 0.0 1.0 8.7 454.0 4.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000045132 Or51v14 ENSMUST00000052152 ENSMUSP00000061764 TRANSLATION protein_coding - CCDS21582.1 - 313.0 0.0 1.0 8.7 454.0 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045132 Or51v14 ENSMUST00000215752 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000098094 Scgb2b17 ENSMUST00000182139 ENSMUSP00000138629 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0745 - -2.0 MINOR ENSMUSG00000098094 Scgb2b17 ENSMUST00000182640 ENSMUSP00000138414 TRANSLATION protein_coding - - 3 81.0 0.0 -0.15 0.0 25.1 0.0 0,-3 0.1796 - 0.0 ALTERNATIVE:2 ENSMUSG00000098094 Scgb2b17 ENSMUST00000182673 ENSMUSP00000138446 TRANSLATION protein_coding - CCDS59728.1 2 82.0 0.0 -0.15 0.0 25.1 0.0 1,-2 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000037020 Wdr62 ENSMUST00000152543 - NO_TRANSLATION retained_intron ENSMUSG00000037020 Wdr62 ENSMUST00000134570 ENSMUSP00000116139 TRANSLATION protein_coding start - 1 1053.0 0.0 3.825 0.0 22.6 0.0 -4,-5 0.0101 9 -2.0 MINOR ENSMUSG00000037020 Wdr62 ENSMUST00000145027 ENSMUSP00000116772 TRANSLATION nonsense_mediated_decay - - 1 1076.0 0.0 7.017 0.0 70.5 0.0 -4,-7 0.2571 6 -2.0 MINOR ENSMUSG00000037020 Wdr62 ENSMUST00000152234 - NO_TRANSLATION retained_intron ENSMUSG00000037020 Wdr62 ENSMUST00000133347 - NO_TRANSLATION retained_intron ENSMUSG00000037020 Wdr62 ENSMUST00000132483 - NO_TRANSLATION retained_intron ENSMUSG00000037020 Wdr62 ENSMUST00000108190 ENSMUSP00000103825 TRANSLATION protein_coding - CCDS52178.1 1 1524.0 0.0 7.017 0.0 70.5 0.0 -4,-7 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000038968 Klk1b16 ENSMUST00000005933 ENSMUSP00000005933 TRANSLATION protein_coding - CCDS21197.1 1 261.0 6.0 4.0 6.8 209.8 0.0 4,-1 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000030717 Nupr1 ENSMUST00000191413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030717 Nupr1 ENSMUST00000131174 - NO_TRANSLATION retained_intron ENSMUSG00000030717 Nupr1 ENSMUST00000151105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030717 Nupr1 ENSMUST00000032961 ENSMUSP00000032961 TRANSLATION protein_coding - CCDS40127.1 1 80.0 0.0 0.0 2.7 85.2 0.0 -4,-5 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000030717 Nupr1 ENSMUST00000187609 ENSMUSP00000145914 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000030717 Nupr1 ENSMUST00000191192 ENSMUSP00000139489 TRANSLATION nonsense_mediated_decay start - 3 29.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000095212 Or5p53 ENSMUST00000217618 ENSMUSP00000150610 TRANSLATION protein_coding - CCDS21696.1 2 310.0 0.0 1.0 12.5 162.5 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095212 Or5p53 ENSMUST00000084761 ENSMUSP00000081816 TRANSLATION protein_coding - CCDS21696.1 - 310.0 0.0 1.0 12.5 162.5 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074377 Sult2a4 ENSMUST00000165167 ENSMUSP00000130490 TRANSLATION protein_coding - CCDS52032.1 5 284.0 19.0 6.0 6.8 270.7 0.0 -4,-5 1.0 - 13.732 PRINCIPAL:4 ENSMUSG00000074377 Sult2a4 ENSMUST00000108520 ENSMUSP00000104160 TRANSLATION protein_coding - - 5 285.0 19.0 6.0 7.7 270.7 0.0 -4,-5 0.8923 - 14.0 ALTERNATIVE:1 ENSMUSG00000045598 Zfp553 ENSMUST00000205367 - NO_TRANSLATION retained_intron ENSMUSG00000045598 Zfp553 ENSMUST00000056232 ENSMUSP00000060967 TRANSLATION protein_coding - CCDS21860.1 1 591.0 40.0 0.5 0.4 264.6 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000045598 Zfp553 ENSMUST00000106312 ENSMUSP00000101919 TRANSLATION protein_coding - CCDS21860.1 1 591.0 40.0 0.5 0.4 264.6 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000036845 Lin37 ENSMUST00000149400 - NO_TRANSLATION retained_intron ENSMUSG00000036845 Lin37 ENSMUST00000108164 ENSMUSP00000103799 TRANSLATION protein_coding - CCDS71930.1 1 234.0 0.0 0.0 5.9 160.2 0.0 -4,-5 0.3942 3 7.06 MINOR ENSMUSG00000036845 Lin37 ENSMUST00000156241 ENSMUSP00000122248 TRANSLATION protein_coding stop - 5 202.0 0.0 0.0 0.0 103.5 0.0 -4,-5 0.0004 3 -2.0 MINOR ENSMUSG00000036845 Lin37 ENSMUST00000146548 - NO_TRANSLATION retained_intron ENSMUSG00000036845 Lin37 ENSMUST00000043975 ENSMUSP00000048557 TRANSLATION protein_coding - CCDS21098.1 1 246.0 0.0 0.0 19.5 160.2 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000051437 Ubqlnl ENSMUST00000059121 ENSMUSP00000056365 TRANSLATION protein_coding - CCDS21611.1 - 610.0 0.0 0.0 2.4 54.1 0.0 -4,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000092579 Vmn1r62 ENSMUST00000173956 ENSMUSP00000134168 TRANSLATION protein_coding - CCDS57477.1 - 300.0 0.0 0.0 0.0 60.5 7.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000092579 Vmn1r62 ENSMUST00000237772 ENSMUSP00000157413 TRANSLATION protein_coding - CCDS57477.1 - 300.0 0.0 0.0 0.0 60.5 7.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038187 Btbd10 ENSMUST00000117577 ENSMUSP00000113496 TRANSLATION protein_coding - - 5 483.0 0.0 4.85 16.0 169.1 0.0 -4,-5 0.7937 5 14.576 MINOR ENSMUSG00000038187 Btbd10 ENSMUST00000047091 ENSMUSP00000048530 TRANSLATION protein_coding - CCDS21755.1 1 475.0 0.0 4.85 24.3 169.1 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000038187 Btbd10 ENSMUST00000139650 - NO_TRANSLATION retained_intron ENSMUSG00000038187 Btbd10 ENSMUST00000119278 ENSMUSP00000113632 TRANSLATION protein_coding - - 5 427.0 0.0 4.85 16.4 169.1 0.0 -4,-2 0.755 5 14.644 MINOR ENSMUSG00000038187 Btbd10 ENSMUST00000135510 ENSMUSP00000114806 TRANSLATION nonsense_mediated_decay - - 5 202.0 0.0 0.5 0.0 46.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038187 Btbd10 ENSMUST00000129567 - NO_TRANSLATION retained_intron ENSMUSG00000108596 Gm49368 ENSMUST00000134694 ENSMUSP00000117120 TRANSLATION protein_coding,RT start - 5 125.0 0.0 1.2 0.0 27.5 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000108596 Gm49368 ENSMUST00000098015 ENSMUSP00000095625 TRANSLATION protein_coding,RT - - 1 1232.0 29.0 22.98 0.0 343.0 0.0 4,-1 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000030602 Pak4 ENSMUST00000135923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030602 Pak4 ENSMUST00000032823 ENSMUSP00000032823 TRANSLATION protein_coding - CCDS21049.1 1 593.0 19.0 5.8 9.1 283.0 0.0 -4,-7 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000030602 Pak4 ENSMUST00000108283 ENSMUSP00000103918 TRANSLATION protein_coding - CCDS21049.1 1 593.0 19.0 5.8 9.1 283.0 0.0 -4,-7 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000030602 Pak4 ENSMUST00000150454 - NO_TRANSLATION retained_intron ENSMUSG00000059128 Ifnl2 ENSMUST00000081684 ENSMUSP00000080384 TRANSLATION protein_coding - CCDS39861.1 1 193.0 0.0 4.1 0.0 244.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000001249 Hpn ENSMUST00000165124 ENSMUSP00000145624 TRANSLATION nonsense_mediated_decay - - 2 137.0 0.0 2.4 0.0 188.6 1.0 -3,-5 0.0 2 -2.0 MINOR ENSMUSG00000001249 Hpn ENSMUST00000171259 ENSMUSP00000132307 TRANSLATION protein_coding start - 5 179.0 3.0 4.25 0.0 151.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000001249 Hpn ENSMUST00000039435 ENSMUSP00000038149 TRANSLATION protein_coding - CCDS71936.1 1 445.0 5.0 9.65 0.0 476.4 1.0 -4,-5 0.1331 7 17.0 MINOR ENSMUSG00000001249 Hpn ENSMUST00000164929 ENSMUSP00000127229 TRANSLATION protein_coding stop - 3 82.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000001249 Hpn ENSMUST00000165480 - NO_TRANSLATION retained_intron ENSMUSG00000001249 Hpn ENSMUST00000108102 ENSMUSP00000103737 TRANSLATION protein_coding - CCDS52188.1 1 436.0 5.0 9.65 0.4 476.4 1.0 -4,-5 0.2013 7 17.0 MINOR ENSMUSG00000001249 Hpn ENSMUST00000171225 ENSMUSP00000130966 TRANSLATION protein_coding start - 3 32.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001249 Hpn ENSMUST00000164340 - NO_TRANSLATION retained_intron ENSMUSG00000001249 Hpn ENSMUST00000167719 - NO_TRANSLATION retained_intron ENSMUSG00000001249 Hpn ENSMUST00000168623 - NO_TRANSLATION retained_intron ENSMUSG00000001249 Hpn ENSMUST00000168884 ENSMUSP00000131658 TRANSLATION protein_coding - CCDS52187.1 1 416.0 5.0 9.65 15.8 476.4 1.0 -3,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000060407 Cyp2a12 ENSMUST00000075552 ENSMUSP00000074990 TRANSLATION protein_coding - CCDS21009.1 1 492.0 50.0 9.0 15.7 505.4 0.0 1,-3 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000060407 Cyp2a12 ENSMUST00000207016 - NO_TRANSLATION retained_intron ENSMUSG00000047517 Dmbt1 ENSMUST00000208860 - NO_TRANSLATION retained_intron ENSMUSG00000047517 Dmbt1 ENSMUST00000209167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047517 Dmbt1 ENSMUST00000084509 ENSMUSP00000081556 TRANSLATION protein_coding - CCDS21909.1 1 1946.0 25.0 12.9491 0.0 1383.1 0.0 0,-4 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000047517 Dmbt1 ENSMUST00000213064 ENSMUSP00000148657 TRANSLATION protein_coding - - 5 1783.0 25.0 11.4211 0.0 1268.0 0.0 0,-4 0.1449 19 8.946 MINOR ENSMUSG00000047517 Dmbt1 ENSMUST00000209015 ENSMUSP00000146345 TRANSLATION protein_coding start - 2 423.0 4.0 2.36 0.0 269.3 0.0 -4,-5 0.0 16 -2.0 MINOR ENSMUSG00000047517 Dmbt1 ENSMUST00000208311 ENSMUSP00000146685 TRANSLATION protein_coding - CCDS85436.1 1 1957.0 23.0 12.9491 0.0 1383.1 0.0 0,-6 0.7158 20 16.668 MINOR ENSMUSG00000066756 Igfl3 ENSMUST00000152973 ENSMUSP00000123628 TRANSLATION protein_coding - CCDS52049.1 1 140.0 0.0 1.0 0.0 120.9 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030433 Sbk2 ENSMUST00000032598 ENSMUSP00000032598 TRANSLATION protein_coding - CCDS51980.1 3 362.0 5.0 4.0 0.1 134.6 0.0 -4,-5 1.0 6 17.0 PRINCIPAL:1 ENSMUSG00000030433 Sbk2 ENSMUST00000183170 ENSMUSP00000138187 TRANSLATION protein_coding stop - 3 216.0 5.0 3.0 0.0 97.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000030433 Sbk2 ENSMUST00000208109 ENSMUSP00000146819 TRANSLATION protein_coding - - 5 189.0 1.0 2.16 0.0 33.3 0.0 -4,-5 0.0 - 3.322 MINOR ENSMUSG00000030433 Sbk2 ENSMUST00000182837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030433 Sbk2 ENSMUST00000182214 ENSMUSP00000138504 TRANSLATION protein_coding - CCDS51980.1 5 362.0 5.0 4.0 0.1 134.6 0.0 -4,-5 1.0 6 17.0 PRINCIPAL:1 ENSMUSG00000073909 Or56b34 ENSMUST00000098155 ENSMUSP00000095758 TRANSLATION protein_coding - CCDS52348.1 - 321.0 0.0 1.0 7.1 253.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000009687 Fxyd5 ENSMUST00000162250 ENSMUSP00000124129 TRANSLATION protein_coding start - 5 127.0 0.0 1.33 0.0 64.3 1.0 -4,-5 0.0703 3 -2.0 MINOR ENSMUSG00000009687 Fxyd5 ENSMUST00000162733 ENSMUSP00000125173 TRANSLATION protein_coding - - 1 185.0 0.0 1.08 0.0 51.7 1.0 4,-2 0.0536 3 5.872 MINOR ENSMUSG00000009687 Fxyd5 ENSMUST00000160689 ENSMUSP00000125187 TRANSLATION protein_coding stop - 3 117.0 0.0 0.0 0.0 0.0 0.0 4,-3 0.0016 3 -2.0 MINOR ENSMUSG00000009687 Fxyd5 ENSMUST00000162087 ENSMUSP00000125065 TRANSLATION protein_coding - CCDS21121.1 3 178.0 0.0 1.33 0.1 64.3 1.0 4,-2 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000009687 Fxyd5 ENSMUST00000159753 ENSMUSP00000123813 TRANSLATION protein_coding stop - 5 111.0 0.0 0.0 0.0 0.0 0.0 4,-2 0.0016 3 -2.0 MINOR ENSMUSG00000009687 Fxyd5 ENSMUST00000161805 ENSMUSP00000125398 TRANSLATION protein_coding - CCDS21121.1 1 178.0 0.0 1.33 0.1 64.3 1.0 4,-2 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000009687 Fxyd5 ENSMUST00000159924 ENSMUSP00000124219 TRANSLATION protein_coding - CCDS21121.1 5 178.0 0.0 1.33 0.1 64.3 1.0 4,-2 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000009687 Fxyd5 ENSMUST00000160006 - NO_TRANSLATION retained_intron ENSMUSG00000009687 Fxyd5 ENSMUST00000161684 ENSMUSP00000125285 TRANSLATION protein_coding - CCDS21121.1 1 178.0 0.0 1.33 0.1 64.3 1.0 4,-2 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000009687 Fxyd5 ENSMUST00000162116 ENSMUSP00000124203 TRANSLATION protein_coding - CCDS21121.1 5 178.0 0.0 1.33 0.1 64.3 1.0 4,-2 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000009687 Fxyd5 ENSMUST00000161259 - NO_TRANSLATION retained_intron ENSMUSG00000009687 Fxyd5 ENSMUST00000202395 ENSMUSP00000144377 TRANSLATION protein_coding stop - 3 108.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0 2 -2.0 MINOR ENSMUSG00000009687 Fxyd5 ENSMUST00000205301 - NO_TRANSLATION retained_intron ENSMUSG00000009687 Fxyd5 ENSMUST00000009831 ENSMUSP00000009831 TRANSLATION protein_coding - CCDS71935.1 3 179.0 0.0 1.33 0.1 64.3 1.0 4,-2 0.6697 4 8.0 ALTERNATIVE:2 ENSMUSG00000031028 Tub ENSMUST00000207583 ENSMUSP00000146894 TRANSLATION protein_coding stop - 2 167.0 0.0 0.0 0.0 104.3 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000031028 Tub ENSMUST00000033341 ENSMUSP00000033341 TRANSLATION protein_coding - CCDS21732.1 1 505.0 5.0 6.0 9.5 511.5 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000031028 Tub ENSMUST00000208442 - NO_TRANSLATION retained_intron ENSMUSG00000031028 Tub ENSMUST00000147943 - NO_TRANSLATION retained_intron ENSMUSG00000031028 Tub ENSMUST00000119474 ENSMUSP00000113580 TRANSLATION protein_coding - - 1 459.0 5.0 6.0 1.1 463.0 0.0 -4,-2 0.1033 6 14.126 MINOR ENSMUSG00000030678 Maz ENSMUST00000206291 ENSMUSP00000146267 TRANSLATION protein_coding stop - 3 109.0 0.0 0.165 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030678 Maz ENSMUST00000206254 ENSMUSP00000145610 TRANSLATION protein_coding - - 5 454.0 26.0 2.415 4.6 66.3 0.0 -4,-5 0.3843 7 13.79 MINOR ENSMUSG00000030678 Maz ENSMUST00000205461 ENSMUSP00000145984 TRANSLATION protein_coding - - 5 172.0 8.0 1.165 1.0 0.0 0.0 -2,-4 0.0236 4 2.622 MINOR ENSMUSG00000030678 Maz ENSMUST00000205568 ENSMUSP00000145619 TRANSLATION protein_coding - - 5 493.0 31.0 2.665 5.7 95.7 0.0 -2,-3 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000030678 Maz ENSMUST00000206953 - NO_TRANSLATION retained_intron ENSMUSG00000030678 Maz ENSMUST00000032916 ENSMUSP00000032916 TRANSLATION protein_coding - CCDS40137.1 1 477.0 26.0 2.415 4.6 66.3 0.0 -2,-3 0.4916 8 13.79 MINOR ENSMUSG00000070458 Vmn2r73 ENSMUST00000233315 ENSMUSP00000156619 TRANSLATION protein_coding - - - 754.0 5.0 2.34 0.0 316.0 11.0 0,-4 0.026 - 13.85 MINOR ENSMUSG00000070458 Vmn2r73 ENSMUST00000233115 ENSMUSP00000156444 TRANSLATION protein_coding - - - 572.0 4.0 1.906 0.0 147.8 0.0 0,-4 0.0 - 8.176 MINOR ENSMUSG00000070458 Vmn2r73 ENSMUST00000232965 ENSMUSP00000156768 TRANSLATION protein_coding - - - 496.0 4.0 1.656 0.0 134.5 0.0 0,-4 0.0 - 7.624 MINOR ENSMUSG00000070458 Vmn2r73 ENSMUST00000077478 ENSMUSP00000076687 TRANSLATION protein_coding - CCDS52295.1 5 851.0 5.0 2.74 0.3 353.9 11.0 0,-4 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000070458 Vmn2r73 ENSMUST00000233729 ENSMUSP00000156568 TRANSLATION protein_coding - - - 830.0 5.0 2.59 0.0 329.2 11.0 0,-4 0.0753 - 15.188 MINOR ENSMUSG00000070458 Vmn2r73 ENSMUST00000233748 ENSMUSP00000156901 TRANSLATION protein_coding - - - 551.0 4.0 1.756 0.0 123.1 0.0 0,-4 0.0 - 7.846 MINOR ENSMUSG00000070458 Vmn2r73 ENSMUST00000233079 ENSMUSP00000156903 TRANSLATION protein_coding - - - 775.0 5.0 2.49 0.0 340.6 11.0 0,-4 0.0383 - 15.656 MINOR ENSMUSG00000070458 Vmn2r73 ENSMUST00000232897 ENSMUSP00000156472 TRANSLATION protein_coding - - - 475.0 4.0 1.506 0.0 109.9 0.0 0,-4 0.0 - 7.3 MINOR ENSMUSG00000040424 Hipk4 ENSMUST00000037134 ENSMUSP00000043175 TRANSLATION protein_coding - - 1 412.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - 2.31 MINOR ENSMUSG00000040424 Hipk4 ENSMUST00000108353 ENSMUSP00000103990 TRANSLATION protein_coding - CCDS21024.2 1 616.0 17.0 2.6 9.1 169.1 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000101436 Gm5157 ENSMUST00000185914 ENSMUSP00000140639 TRANSLATION protein_coding - - 1 301.0 17.0 1.0 0.0 238.5 0.0 -4,-5 0.8077 - 18.0 PRINCIPAL:1 ENSMUSG00000030397 Mark4 ENSMUST00000209058 ENSMUSP00000147002 TRANSLATION nonsense_mediated_decay - - 1 61.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000030397 Mark4 ENSMUST00000239292 ENSMUSP00000159279 TRANSLATION protein_coding - - - 688.0 19.0 8.32 4.6 282.4 0.0 -4,-6 0.4287 13 16.92 MINOR ENSMUSG00000030397 Mark4 ENSMUST00000209011 - NO_TRANSLATION retained_intron ENSMUSG00000030397 Mark4 ENSMUST00000208650 - NO_TRANSLATION retained_intron ENSMUSG00000030397 Mark4 ENSMUST00000207767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030397 Mark4 ENSMUST00000085715 ENSMUSP00000082862 TRANSLATION protein_coding - CCDS20903.1 1 752.0 19.0 8.32 5.3 328.3 0.0 -4,-6 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000040466 Blvrb ENSMUST00000108357 ENSMUSP00000103994 TRANSLATION protein_coding - CCDS71922.1 2 120.0 15.0 2.83 0.7 58.4 0.0 -4,-5 0.0013 6 4.44 MINOR ENSMUSG00000040466 Blvrb ENSMUST00000037399 ENSMUSP00000043092 TRANSLATION protein_coding - CCDS39848.1 1 206.0 34.0 4.58 15.2 126.1 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000040466 Blvrb ENSMUST00000108358 ENSMUSP00000103995 TRANSLATION protein_coding - - 3 247.0 29.0 2.75 0.0 90.2 0.0 -4,-7 0.0006 8 8.85 MINOR ENSMUSG00000040466 Blvrb ENSMUST00000153644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040466 Blvrb ENSMUST00000207799 - NO_TRANSLATION retained_intron ENSMUSG00000040466 Blvrb ENSMUST00000133750 ENSMUSP00000146130 TRANSLATION protein_coding - - 2 126.0 22.0 2.58 0.0 83.4 0.0 -4,-7 0.0 4 5.436 MINOR ENSMUSG00000042675 Ypel3 ENSMUST00000206143 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042675 Ypel3 ENSMUST00000106357 ENSMUSP00000101964 TRANSLATION protein_coding - CCDS21842.1 1 119.0 4.0 3.25 36.9 49.4 0.0 -4,-2 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000042675 Ypel3 ENSMUST00000038614 ENSMUSP00000037332 TRANSLATION protein_coding - CCDS21842.1 1 119.0 4.0 3.25 36.9 49.4 0.0 -4,-2 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000042675 Ypel3 ENSMUST00000145762 ENSMUSP00000115596 TRANSLATION protein_coding stop - 3 103.0 4.0 2.75 0.0 39.4 0.0 -4,-2 0.0035 2 -2.0 MINOR ENSMUSG00000042675 Ypel3 ENSMUST00000106359 ENSMUSP00000101966 TRANSLATION protein_coding - - 5 83.0 2.0 1.25 0.0 0.0 0.0 -4,-7 0.0 1 3.998 MINOR ENSMUSG00000042675 Ypel3 ENSMUST00000143078 - NO_TRANSLATION retained_intron ENSMUSG00000042675 Ypel3 ENSMUST00000150760 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042675 Ypel3 ENSMUST00000132643 ENSMUSP00000115272 TRANSLATION protein_coding stop - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042675 Ypel3 ENSMUST00000156891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042675 Ypel3 ENSMUST00000106356 ENSMUSP00000101963 TRANSLATION protein_coding - CCDS21842.1 5 119.0 4.0 3.25 36.9 49.4 0.0 -4,-2 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000042675 Ypel3 ENSMUST00000170882 ENSMUSP00000128753 TRANSLATION protein_coding - CCDS21842.1 3 119.0 4.0 3.25 36.9 49.4 0.0 -4,-2 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000093536 Smim17 ENSMUST00000160218 ENSMUSP00000126877 TRANSLATION protein_coding - CCDS51990.1 1 109.0 0.0 1.0 5.9 0.0 1.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000093536 Smim17 ENSMUST00000159318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093536 Smim17 ENSMUST00000161855 ENSMUSP00000130202 TRANSLATION protein_coding - CCDS51990.1 3 109.0 0.0 1.0 5.9 0.0 1.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000038782 1700028J19Rik ENSMUST00000237383 ENSMUSP00000158557 TRANSLATION protein_coding - - - 221.0 0.0 0.0 0.4 0.0 8.0 -4,-7 0.0728 - 0.0 ALTERNATIVE:2 ENSMUSG00000038782 1700028J19Rik ENSMUST00000208099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038782 1700028J19Rik ENSMUST00000206366 ENSMUSP00000145781 TRANSLATION protein_coding start - 1 172.0 0.0 0.0 0.0 0.0 6.0 0,-3 0.1232 - -2.0 MINOR ENSMUSG00000038782 1700028J19Rik ENSMUST00000037220 ENSMUSP00000048665 TRANSLATION protein_coding - - 1 129.0 0.0 0.0 0.0 0.0 5.0 -4,-6 0.5677 - 0.0 PRINCIPAL:2 ENSMUSG00000038782 1700028J19Rik ENSMUST00000206686 ENSMUSP00000145629 TRANSLATION protein_coding - - 1 129.0 0.0 0.0 0.0 0.0 5.0 -4,-6 0.5677 - 0.0 PRINCIPAL:2 ENSMUSG00000038782 1700028J19Rik ENSMUST00000236952 ENSMUSP00000157693 TRANSLATION protein_coding - - - 267.0 0.0 0.0 0.4 0.0 10.0 -4,-6 0.1646 - 0.0 ALTERNATIVE:2 ENSMUSG00000004610 Etfb ENSMUST00000206196 ENSMUSP00000145672 TRANSLATION protein_coding stop - 2 177.0 19.0 5.0 0.0 131.9 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000004610 Etfb ENSMUST00000205363 ENSMUSP00000146325 TRANSLATION protein_coding start - 3 100.0 10.0 3.33 0.0 36.1 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000004610 Etfb ENSMUST00000206286 ENSMUSP00000145608 TRANSLATION protein_coding stop - 5 177.0 17.0 5.0 0.0 101.2 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000004610 Etfb ENSMUST00000155468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004610 Etfb ENSMUST00000206411 ENSMUSP00000145650 TRANSLATION protein_coding start - 5 213.0 20.0 5.75 0.0 152.7 0.0 -4,-7 0.0051 10 -2.0 MINOR ENSMUSG00000004610 Etfb ENSMUST00000143096 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004610 Etfb ENSMUST00000004729 ENSMUSP00000004729 TRANSLATION protein_coding - CCDS21171.1 1 255.0 20.0 7.58 14.0 165.8 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000060397 Zfp128 ENSMUST00000144578 ENSMUSP00000115378 TRANSLATION protein_coding - CCDS20815.1 1 572.0 28.0 0.5 2.5 257.2 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000060397 Zfp128 ENSMUST00000081891 - NO_TRANSLATION retained_intron ENSMUSG00000063535 Zfp773 ENSMUST00000032622 ENSMUSP00000032622 TRANSLATION protein_coding - CCDS51992.1 1 471.0 32.0 1.8 0.0 191.8 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000063535 Zfp773 ENSMUST00000211240 ENSMUSP00000147639 TRANSLATION protein_coding - - 1 185.0 0.0 0.8 0.0 54.2 0.0 -4,-7 0.0 - 2.664 MINOR ENSMUSG00000002602 Axl ENSMUST00000132038 ENSMUSP00000114907 TRANSLATION protein_coding start/stop - 3 188.0 8.0 1.75 0.0 21.9 2.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000002602 Axl ENSMUST00000085948 ENSMUSP00000083110 TRANSLATION protein_coding - CCDS57528.1 1 879.0 18.0 11.0 5.0 430.4 2.0 4,-1 0.8957 11 15.334 ALTERNATIVE:1 ENSMUSG00000002602 Axl ENSMUST00000132989 - NO_TRANSLATION retained_intron ENSMUSG00000002602 Axl ENSMUST00000137383 - NO_TRANSLATION retained_intron ENSMUSG00000002602 Axl ENSMUST00000002677 ENSMUSP00000002677 TRANSLATION protein_coding - CCDS20996.1 1 888.0 18.0 11.0 7.0 430.4 2.0 4,-1 1.0 11 16.0 PRINCIPAL:4 ENSMUSG00000002602 Axl ENSMUST00000137211 - NO_TRANSLATION retained_intron ENSMUSG00000002602 Axl ENSMUST00000147680 - NO_TRANSLATION retained_intron ENSMUSG00000002602 Axl ENSMUST00000124442 - NO_TRANSLATION retained_intron ENSMUSG00000063394 Or14c40 ENSMUST00000081474 ENSMUSP00000080193 TRANSLATION protein_coding - CCDS21434.1 - 336.0 0.0 1.0 0.0 153.7 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063394 Or14c40 ENSMUST00000214401 ENSMUSP00000149592 TRANSLATION protein_coding - CCDS21434.1 5 336.0 0.0 1.0 0.0 153.7 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063394 Or14c40 ENSMUST00000215280 ENSMUSP00000149959 TRANSLATION protein_coding - CCDS21434.1 5 336.0 0.0 1.0 0.0 153.7 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030811 Fbxl19 ENSMUST00000189562 ENSMUSP00000139972 TRANSLATION protein_coding stop - 5 61.0 8.0 1.0 0.0 57.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000030811 Fbxl19 ENSMUST00000186207 ENSMUSP00000140303 TRANSLATION protein_coding - CCDS21877.1 1 674.0 16.0 6.15 7.5 187.5 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:2 ENSMUSG00000030811 Fbxl19 ENSMUST00000205689 ENSMUSP00000145793 TRANSLATION protein_coding stop - 5 60.0 8.0 1.0 0.0 57.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000030811 Fbxl19 ENSMUST00000188580 ENSMUSP00000140021 TRANSLATION protein_coding - - 1 558.0 16.0 6.15 0.0 187.5 0.0 -4,-7 0.1025 4 14.0 MINOR ENSMUSG00000030811 Fbxl19 ENSMUST00000033081 ENSMUSP00000033081 TRANSLATION protein_coding - CCDS21877.1 1 674.0 16.0 6.15 7.5 187.5 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:2 ENSMUSG00000030811 Fbxl19 ENSMUST00000186116 ENSMUSP00000140083 TRANSLATION protein_coding - - 5 382.0 0.0 3.4 1.0 39.4 0.0 -4,-5 0.0478 3 0.998 MINOR ENSMUSG00000030811 Fbxl19 ENSMUST00000206893 ENSMUSP00000145616 TRANSLATION protein_coding - - 5 631.0 16.0 6.15 5.2 187.5 0.0 -4,-7 0.6909 6 15.292 ALTERNATIVE:1 ENSMUSG00000015980 Lrrc27 ENSMUST00000130248 - NO_TRANSLATION retained_intron ENSMUSG00000015980 Lrrc27 ENSMUST00000126199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015980 Lrrc27 ENSMUST00000156768 ENSMUSP00000116624 TRANSLATION protein_coding stop - 3 100.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015980 Lrrc27 ENSMUST00000016124 ENSMUSP00000016124 TRANSLATION protein_coding - CCDS21953.1 1 523.0 0.0 2.61 0.0 43.9 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000015980 Lrrc27 ENSMUST00000126213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015980 Lrrc27 ENSMUST00000152992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015980 Lrrc27 ENSMUST00000142176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015980 Lrrc27 ENSMUST00000135509 ENSMUSP00000116827 TRANSLATION protein_coding stop - 5 179.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015980 Lrrc27 ENSMUST00000106104 ENSMUSP00000101710 TRANSLATION protein_coding - CCDS52426.1 1 394.0 0.0 2.61 0.0 43.9 0.0 -4,-5 0.2642 - 8.0 ALTERNATIVE:2 ENSMUSG00000068566 Myadm ENSMUST00000203566 ENSMUSP00000145120 TRANSLATION protein_coding - CCDS51964.1 1 320.0 0.0 0.165 0.0 113.1 9.0 -2,0 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000068566 Myadm ENSMUST00000204541 ENSMUSP00000145426 TRANSLATION protein_coding stop - 3 81.0 0.0 0.0 0.0 36.4 4.0 -2,0 0.0033 2 -2.0 MINOR ENSMUSG00000068566 Myadm ENSMUST00000164553 ENSMUSP00000131318 TRANSLATION protein_coding - CCDS51964.1 1 320.0 0.0 0.165 0.0 113.1 9.0 -2,0 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000068566 Myadm ENSMUST00000096744 ENSMUSP00000094505 TRANSLATION protein_coding - CCDS51964.1 1 320.0 0.0 0.165 0.0 113.1 9.0 -2,0 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000068566 Myadm ENSMUST00000203328 ENSMUSP00000144984 TRANSLATION protein_coding - CCDS51964.1 2 320.0 0.0 0.165 0.0 113.1 9.0 -2,0 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000030660 Pik3c2a ENSMUST00000206248 - NO_TRANSLATION retained_intron ENSMUSG00000030660 Pik3c2a ENSMUST00000205767 - NO_TRANSLATION retained_intron ENSMUSG00000030660 Pik3c2a ENSMUST00000205378 ENSMUSP00000145572 TRANSLATION nonsense_mediated_decay - - 1 364.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0011 4 -2.0 MINOR ENSMUSG00000030660 Pik3c2a ENSMUST00000170430 ENSMUSP00000126092 TRANSLATION protein_coding - CCDS52371.1 5 1686.0 17.0 16.015 7.7 653.4 0.0 -4,-6 1.0 32 20.0 PRINCIPAL:1 ENSMUSG00000030660 Pik3c2a ENSMUST00000206219 ENSMUSP00000146181 TRANSLATION protein_coding - CCDS52371.1 5 1686.0 17.0 16.015 7.7 653.4 0.0 -4,-6 1.0 32 20.0 PRINCIPAL:1 ENSMUSG00000030660 Pik3c2a ENSMUST00000206805 - NO_TRANSLATION retained_intron ENSMUSG00000030660 Pik3c2a ENSMUST00000206385 ENSMUSP00000145690 TRANSLATION nonsense_mediated_decay start - 1 448.0 17.0 7.2 0.0 291.8 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000046364 Rpl27a ENSMUST00000143107 ENSMUSP00000123410 TRANSLATION protein_coding - CCDS40083.1 1 148.0 0.0 3.5 34.9 88.2 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000046364 Rpl27a ENSMUST00000053298 - NO_TRANSLATION retained_intron ENSMUSG00000046364 Rpl27a ENSMUST00000174303 - NO_TRANSLATION retained_intron ENSMUSG00000046364 Rpl27a ENSMUST00000132877 - NO_TRANSLATION retained_intron ENSMUSG00000046364 Rpl27a ENSMUST00000149143 - NO_TRANSLATION retained_intron ENSMUSG00000046364 Rpl27a ENSMUST00000156921 ENSMUSP00000134650 TRANSLATION nonsense_mediated_decay - - 2 41.0 0.0 0.0 0.0 0.0 0.0 -2,1 0.0004 - -2.0 MINOR ENSMUSG00000089989 Gm45713 ENSMUST00000209467 ENSMUSP00000147813 TRANSLATION protein_coding,RT - - 1 446.0 0.0 9.25 0.0 235.7 0.0 0,2 0.7947 - -2.0 PRINCIPAL:1 ENSMUSG00000059772 Slx1b ENSMUST00000155012 - NO_TRANSLATION retained_intron ENSMUSG00000059772 Slx1b ENSMUST00000144897 ENSMUSP00000118182 TRANSLATION protein_coding - CCDS21838.1 1 270.0 7.0 2.905 0.4 50.7 0.0 -4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000059772 Slx1b ENSMUST00000084586 - NO_TRANSLATION retained_intron ENSMUSG00000059772 Slx1b ENSMUST00000142337 ENSMUSP00000117927 TRANSLATION nonsense_mediated_decay - - 1 73.0 0.0 0.64 0.0 33.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000095758 Vmn1r128 ENSMUST00000169165 ENSMUSP00000129433 TRANSLATION protein_coding - CCDS52096.1 - 307.0 0.0 0.0 0.4 53.2 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000055942 Obox7 ENSMUST00000183424 ENSMUSP00000138871 TRANSLATION protein_coding stop - 5 137.0 0.0 1.0 0.0 28.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055942 Obox7 ENSMUST00000183788 ENSMUSP00000138932 TRANSLATION protein_coding - CCDS39775.1 1 218.0 0.0 1.5 0.0 52.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055942 Obox7 ENSMUST00000069740 ENSMUSP00000069239 TRANSLATION protein_coding - CCDS39775.1 1 218.0 0.0 1.5 0.0 52.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030663 1110004F10Rik ENSMUST00000205427 ENSMUSP00000145989 TRANSLATION protein_coding stop - 3 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030663 1110004F10Rik ENSMUST00000106608 ENSMUSP00000102219 TRANSLATION protein_coding - - 3 137.0 0.0 1.16 2.1 0.0 0.0 -4,-5 0.0886 1 6.288 MINOR ENSMUSG00000030663 1110004F10Rik ENSMUST00000151254 ENSMUSP00000116035 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000030663 1110004F10Rik ENSMUST00000106607 ENSMUSP00000102218 TRANSLATION protein_coding - - 1 94.0 0.0 0.5 0.1 0.0 0.0 -4,-6 0.0007 - 2.586 MINOR ENSMUSG00000030663 1110004F10Rik ENSMUST00000032899 ENSMUSP00000032899 TRANSLATION protein_coding - CCDS21766.1 1 181.0 0.0 1.16 12.5 46.7 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000030663 1110004F10Rik ENSMUST00000205450 ENSMUSP00000146007 TRANSLATION protein_coding stop - 5 60.0 0.0 1.16 0.0 0.0 0.0 -4,-5 0.0212 1 -2.0 MINOR ENSMUSG00000025726 Slc28a1 ENSMUST00000026820 ENSMUSP00000026820 TRANSLATION protein_coding - CCDS21402.1 1 648.0 10.0 9.15 6.2 361.1 12.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000025726 Slc28a1 ENSMUST00000119083 ENSMUSP00000112421 TRANSLATION protein_coding - CCDS21402.1 5 648.0 10.0 9.15 6.2 361.1 12.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000073894 Rbmxl2 ENSMUST00000098135 ENSMUSP00000095739 TRANSLATION protein_coding - CCDS21689.1 - 385.0 0.0 0.4 0.0 140.7 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000045584 Or51ag1 ENSMUST00000213422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045584 Or51ag1 ENSMUST00000063109 ENSMUSP00000052577 TRANSLATION protein_coding - CCDS21577.1 - 315.0 0.0 1.0 11.4 351.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045584 Or51ag1 ENSMUST00000217627 ENSMUSP00000150921 TRANSLATION protein_coding - CCDS21577.1 5 315.0 0.0 1.0 11.4 351.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000002963 Pnkp ENSMUST00000144669 - NO_TRANSLATION retained_intron ENSMUSG00000002963 Pnkp ENSMUST00000154968 ENSMUSP00000115504 TRANSLATION protein_coding stop - 5 34.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000002963 Pnkp ENSMUST00000139003 ENSMUSP00000143904 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 1.5 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000002963 Pnkp ENSMUST00000202646 ENSMUSP00000144484 TRANSLATION non_stop_decay start/stop - 3 148.0 7.0 3.08 0.0 66.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000002963 Pnkp ENSMUST00000098478 ENSMUSP00000096078 TRANSLATION protein_coding - CCDS71955.1 1 486.0 12.0 12.18 0.0 141.7 0.0 -4,-1 0.0118 12 8.694 MINOR ENSMUSG00000002963 Pnkp ENSMUST00000124168 ENSMUSP00000144330 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 1.5 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000002963 Pnkp ENSMUST00000123015 ENSMUSP00000143862 TRANSLATION nonsense_mediated_decay - - 1 180.0 0.0 3.1 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000002963 Pnkp ENSMUST00000200892 ENSMUSP00000144163 TRANSLATION protein_coding start/stop - 2 151.0 0.0 2.58 0.0 37.1 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000002963 Pnkp ENSMUST00000003044 ENSMUSP00000003044 TRANSLATION protein_coding - CCDS39945.1 1 522.0 14.0 13.18 6.5 241.3 0.0 -4,-1 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000002963 Pnkp ENSMUST00000126860 - NO_TRANSLATION retained_intron ENSMUSG00000002963 Pnkp ENSMUST00000201882 ENSMUSP00000144690 TRANSLATION nonsense_mediated_decay - - 5 426.0 14.0 9.68 0.0 184.8 0.0 -4,-1 0.001 7 -2.0 MINOR ENSMUSG00000002963 Pnkp ENSMUST00000107876 ENSMUSP00000103508 TRANSLATION protein_coding - CCDS39945.1 1 522.0 14.0 13.18 6.5 241.3 0.0 -4,-1 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000002963 Pnkp ENSMUST00000155050 ENSMUSP00000144663 TRANSLATION nonsense_mediated_decay - - 5 59.0 0.0 1.5 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000002963 Pnkp ENSMUST00000145850 - NO_TRANSLATION retained_intron ENSMUSG00000002963 Pnkp ENSMUST00000152747 - NO_TRANSLATION retained_intron ENSMUSG00000002963 Pnkp ENSMUST00000208385 ENSMUSP00000147079 TRANSLATION nonsense_mediated_decay start - 5 80.0 1.0 2.25 0.0 58.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002963 Pnkp ENSMUST00000208666 ENSMUSP00000147012 TRANSLATION protein_coding start/stop - 5 255.0 11.0 5.6 0.0 125.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000030493 Faap24 ENSMUST00000141001 - NO_TRANSLATION retained_intron ENSMUSG00000030493 Faap24 ENSMUST00000032704 ENSMUSP00000032704 TRANSLATION protein_coding - CCDS21149.1 1 221.0 0.0 4.0 0.1 0.0 0.0 -4,-5 0.9688 1 6.0 PRINCIPAL:1 ENSMUSG00000030493 Faap24 ENSMUST00000154597 ENSMUSP00000115766 TRANSLATION protein_coding - CCDS21149.1 3 221.0 0.0 4.0 0.1 0.0 0.0 -4,-5 0.9688 1 6.0 PRINCIPAL:1 ENSMUSG00000074093 Svip ENSMUST00000098414 ENSMUSP00000096014 TRANSLATION protein_coding - CCDS57551.1 1 77.0 0.0 0.0 17.7 83.7 0.0 -4,-5 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000074093 Svip ENSMUST00000209193 ENSMUSP00000146410 TRANSLATION protein_coding - - 1 67.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0009 - 0.0 MINOR ENSMUSG00000074093 Svip ENSMUST00000207457 - NO_TRANSLATION retained_intron ENSMUSG00000061119 Prcp ENSMUST00000208103 - NO_TRANSLATION retained_intron ENSMUSG00000061119 Prcp ENSMUST00000208686 - NO_TRANSLATION retained_intron ENSMUSG00000061119 Prcp ENSMUST00000207594 ENSMUSP00000146597 TRANSLATION protein_coding - - 1 456.0 2.0 7.7 0.0 271.6 0.0 3,-2 0.0133 7 9.734 MINOR ENSMUSG00000061119 Prcp ENSMUST00000076052 ENSMUSP00000075429 TRANSLATION protein_coding - CCDS21452.1 1 491.0 2.0 8.7 1.0 309.4 0.0 3,-2 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000061119 Prcp ENSMUST00000207992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002968 Med25 ENSMUST00000207278 ENSMUSP00000146595 TRANSLATION protein_coding - CCDS85291.1 1 618.0 0.0 7.695 0.0 678.2 0.0 -4,-6 0.0432 3 1.206 MINOR ENSMUSG00000002968 Med25 ENSMUST00000207196 - NO_TRANSLATION retained_intron ENSMUSG00000002968 Med25 ENSMUST00000207788 ENSMUSP00000147117 TRANSLATION nonsense_mediated_decay - - 3 69.0 0.0 1.1 0.0 62.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000002968 Med25 ENSMUST00000207490 ENSMUSP00000146422 TRANSLATION protein_coding start/stop - 5 164.0 0.0 2.562 0.0 100.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002968 Med25 ENSMUST00000123130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002968 Med25 ENSMUST00000208556 ENSMUSP00000146475 TRANSLATION nonsense_mediated_decay - - 3 103.0 0.0 1.1 0.0 60.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000002968 Med25 ENSMUST00000003049 ENSMUSP00000003049 TRANSLATION protein_coding - CCDS21220.1 1 745.0 0.0 10.092 6.9 812.3 0.0 -4,-7 1.0 4 14.0 MINOR ENSMUSG00000002968 Med25 ENSMUST00000208552 - NO_TRANSLATION retained_intron ENSMUSG00000002968 Med25 ENSMUST00000207206 - NO_TRANSLATION retained_intron ENSMUSG00000002968 Med25 ENSMUST00000209191 ENSMUSP00000146676 TRANSLATION protein_coding start/stop - 3 242.0 0.0 4.93 0.0 248.2 0.0 -1,-4 0.0 1 -2.0 MINOR ENSMUSG00000002968 Med25 ENSMUST00000207848 ENSMUSP00000146864 TRANSLATION protein_coding start/stop - 5 205.0 0.0 4.33 0.0 197.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002968 Med25 ENSMUST00000208253 ENSMUSP00000146405 TRANSLATION protein_coding - - 1 801.0 4.0 10.092 0.0 800.3 0.0 -4,-7 0.4008 5 15.28 PRINCIPAL:1 ENSMUSG00000002968 Med25 ENSMUST00000208551 ENSMUSP00000146498 TRANSLATION protein_coding - - 2 742.0 0.0 10.092 0.0 755.9 0.0 -4,-7 0.1255 4 8.616 MINOR ENSMUSG00000002968 Med25 ENSMUST00000207654 ENSMUSP00000146817 TRANSLATION protein_coding stop - 1 599.0 0.0 9.092 0.0 611.7 0.0 -4,-7 0.0087 2 -2.0 MINOR ENSMUSG00000064264 Zfp428 ENSMUST00000177205 ENSMUSP00000135750 TRANSLATION protein_coding - CCDS71912.1 1 189.0 4.0 1.0 11.0 0.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000064264 Zfp428 ENSMUST00000177228 ENSMUSP00000135772 TRANSLATION protein_coding stop - 5 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0108 - -2.0 MINOR ENSMUSG00000064264 Zfp428 ENSMUST00000176880 ENSMUSP00000135601 TRANSLATION protein_coding stop - 5 153.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0146 3 -2.0 MINOR ENSMUSG00000064264 Zfp428 ENSMUST00000071361 ENSMUSP00000071318 TRANSLATION protein_coding - CCDS20952.1 1 176.0 4.0 1.0 0.4 0.0 0.0 -4,-5 0.2069 3 10.0 MINOR ENSMUSG00000042918 Mamstr ENSMUST00000148532 ENSMUSP00000114686 TRANSLATION protein_coding - CCDS21257.2 1 421.0 0.0 0.5 0.1 36.3 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042918 Mamstr ENSMUST00000210648 - NO_TRANSLATION retained_intron ENSMUSG00000042918 Mamstr ENSMUST00000210957 - NO_TRANSLATION retained_intron ENSMUSG00000042918 Mamstr ENSMUST00000210213 - NO_TRANSLATION retained_intron ENSMUSG00000042918 Mamstr ENSMUST00000210169 ENSMUSP00000147269 TRANSLATION protein_coding start - 2 171.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042918 Mamstr ENSMUST00000210988 - NO_TRANSLATION retained_intron ENSMUSG00000073948 Or52ae7 ENSMUST00000213546 ENSMUSP00000150595 TRANSLATION protein_coding - CCDS21575.1 - 316.0 0.0 1.0 9.8 334.4 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048398 Lgalsl2 ENSMUST00000207531 ENSMUSP00000146867 TRANSLATION protein_coding - - 3 165.0 0.0 1.0 17.0 100.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048398 Lgalsl2 ENSMUST00000056639 ENSMUSP00000055799 TRANSLATION protein_coding - - 1 165.0 0.0 1.0 17.0 100.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000060591 Ifitm2 ENSMUST00000081649 ENSMUSP00000071470 TRANSLATION protein_coding - CCDS21994.1 1 144.0 0.0 0.8 3.8 101.1 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000074218 Cox7a1 ENSMUST00000098594 ENSMUSP00000096193 TRANSLATION protein_coding - CCDS21081.1 1 80.0 0.0 1.85 14.7 37.3 1.0 -4,0 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000074218 Cox7a1 ENSMUST00000208441 ENSMUSP00000146960 TRANSLATION protein_coding - - 2 89.0 0.0 1.85 0.0 37.3 1.0 -4,-2 0.1034 2 12.0 MINOR ENSMUSG00000094152 Slc6a16 ENSMUST00000179310 ENSMUSP00000151159 TRANSLATION protein_coding start/stop - 5 669.0 0.0 9.7 0.0 329.3 7.0 -4,-5 0.0185 1 -2.0 MINOR ENSMUSG00000094152 Slc6a16 ENSMUST00000213347 ENSMUSP00000149306 TRANSLATION protein_coding - - 5 742.0 0.0 10.4 0.0 342.4 8.0 -4,-5 0.813 1 12.0 PRINCIPAL:1 ENSMUSG00000094152 Slc6a16 ENSMUST00000210163 - NO_TRANSLATION retained_intron ENSMUSG00000063615 Or51b17 ENSMUST00000081748 ENSMUSP00000080444 TRANSLATION protein_coding - CCDS40062.1 - 307.0 0.0 1.0 5.6 374.7 0.0 -1,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000008028 1700008O03Rik ENSMUST00000150034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008028 1700008O03Rik ENSMUST00000150886 ENSMUSP00000123280 TRANSLATION protein_coding stop - 3 149.0 0.0 2.8 0.0 254.6 0.0 -4,-6 0.0044 - -2.0 MINOR ENSMUSG00000008028 1700008O03Rik ENSMUST00000107933 ENSMUSP00000103566 TRANSLATION protein_coding - CCDS52230.1 1 196.0 0.0 3.3 2.1 264.5 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000008028 1700008O03Rik ENSMUST00000137946 - NO_TRANSLATION retained_intron ENSMUSG00000008028 1700008O03Rik ENSMUST00000134535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040125 Gpr26 ENSMUST00000045840 ENSMUSP00000041664 TRANSLATION protein_coding - CCDS21920.1 1 337.0 0.0 3.0 16.1 112.7 0.0 -3,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000061374 Fiz1 ENSMUST00000077385 ENSMUSP00000076603 TRANSLATION protein_coding - CCDS20751.1 1 500.0 42.0 2.03 0.1 93.7 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000061374 Fiz1 ENSMUST00000207030 ENSMUSP00000147082 TRANSLATION protein_coding - CCDS20751.1 1 500.0 42.0 2.03 0.1 93.7 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000061374 Fiz1 ENSMUST00000208944 ENSMUSP00000147011 TRANSLATION protein_coding - CCDS20751.1 1 500.0 42.0 2.03 0.1 93.7 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000061374 Fiz1 ENSMUST00000167804 ENSMUSP00000126765 TRANSLATION protein_coding - CCDS20751.1 1 500.0 42.0 2.03 0.1 93.7 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000061374 Fiz1 ENSMUST00000207412 ENSMUSP00000147036 TRANSLATION protein_coding stop - 2 36.0 2.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061374 Fiz1 ENSMUST00000165320 ENSMUSP00000128105 TRANSLATION protein_coding - CCDS20751.1 1 500.0 42.0 2.03 0.1 93.7 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000061374 Fiz1 ENSMUST00000209060 ENSMUSP00000146713 TRANSLATION protein_coding stop - 3 90.0 9.0 1.5 0.0 48.4 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000061374 Fiz1 ENSMUST00000207946 ENSMUSP00000147003 TRANSLATION protein_coding stop - 2 95.0 10.0 1.5 0.0 48.4 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000061374 Fiz1 ENSMUST00000207691 - NO_TRANSLATION retained_intron ENSMUSG00000062785 Kcnc3 ENSMUST00000107907 ENSMUSP00000103540 TRANSLATION protein_coding - CCDS39942.1 5 769.0 0.0 0.7 3.6 263.0 4.0 -4,-2 1.0 9 9.0 PRINCIPAL:4 ENSMUSG00000062785 Kcnc3 ENSMUST00000209177 ENSMUSP00000146535 TRANSLATION protein_coding - - 5 768.0 0.0 0.7 0.3 263.0 4.0 -4,-2 0.3637 6 8.0 ALTERNATIVE:2 ENSMUSG00000062785 Kcnc3 ENSMUST00000207497 ENSMUSP00000146479 TRANSLATION nonsense_mediated_decay start - 3 157.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000062785 Kcnc3 ENSMUST00000107906 ENSMUSP00000103539 TRANSLATION protein_coding - - 1 770.0 0.0 0.7 3.6 263.0 4.0 -4,-2 0.8404 9 9.0 ALTERNATIVE:2 ENSMUSG00000062785 Kcnc3 ENSMUST00000208412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062785 Kcnc3 ENSMUST00000208651 ENSMUSP00000146988 TRANSLATION protein_coding - - 5 729.0 0.0 0.7 3.2 263.0 4.0 -4,-2 0.6594 6 8.846 ALTERNATIVE:2 ENSMUSG00000062785 Kcnc3 ENSMUST00000207493 ENSMUSP00000146425 TRANSLATION protein_coding - - 5 730.0 0.0 0.7 3.2 263.0 4.0 -4,-2 0.6603 6 8.846 ALTERNATIVE:2 ENSMUSG00000043290 Zfp784 ENSMUST00000062428 ENSMUSP00000051979 TRANSLATION protein_coding - CCDS20755.1 1 297.0 20.0 0.5 0.0 76.6 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000005649 Cabp5 ENSMUST00000152995 ENSMUSP00000122731 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000005649 Cabp5 ENSMUST00000005791 ENSMUSP00000005791 TRANSLATION protein_coding - CCDS20831.1 1 173.0 13.0 4.394 19.9 96.7 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000005649 Cabp5 ENSMUST00000117400 ENSMUSP00000112415 TRANSLATION protein_coding - - 1 178.0 12.0 4.064 0.0 84.4 0.0 -4,-6 0.0129 - 15.912 MINOR ENSMUSG00000074129 Rpl13a ENSMUST00000210792 - NO_TRANSLATION retained_intron ENSMUSG00000074129 Rpl13a ENSMUST00000210073 - NO_TRANSLATION retained_intron ENSMUSG00000074129 Rpl13a ENSMUST00000211037 ENSMUSP00000148139 TRANSLATION protein_coding start - 5 133.0 0.0 4.08 0.0 34.0 0.0 -4,-2 0.0067 3 -2.0 MINOR ENSMUSG00000074129 Rpl13a ENSMUST00000210967 ENSMUSP00000147866 TRANSLATION nonsense_mediated_decay - - 5 148.0 0.0 4.146 0.0 32.3 0.0 -4,-7 0.0067 5 -2.0 MINOR ENSMUSG00000074129 Rpl13a ENSMUST00000209965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074129 Rpl13a ENSMUST00000209812 ENSMUSP00000147986 TRANSLATION nonsense_mediated_decay - - 5 110.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000074129 Rpl13a ENSMUST00000209711 ENSMUSP00000147909 TRANSLATION protein_coding - - 3 131.0 0.0 3.365 0.0 0.0 0.0 -4,-2 0.0 4 0.09 MINOR ENSMUSG00000074129 Rpl13a ENSMUST00000211438 - NO_TRANSLATION retained_intron ENSMUSG00000074129 Rpl13a ENSMUST00000209212 ENSMUSP00000147958 TRANSLATION nonsense_mediated_decay start - 5 110.0 0.0 2.5 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000074129 Rpl13a ENSMUST00000210134 - NO_TRANSLATION retained_intron ENSMUSG00000074129 Rpl13a ENSMUST00000150350 ENSMUSP00000115722 TRANSLATION protein_coding - CCDS21230.1 1 203.0 0.0 6.32 18.0 33.0 0.0 -4,-7 1.0 8 15.826 PRINCIPAL:1 ENSMUSG00000074129 Rpl13a ENSMUST00000210191 ENSMUSP00000147520 TRANSLATION nonsense_mediated_decay - - 5 128.0 0.0 2.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000074129 Rpl13a ENSMUST00000209967 - NO_TRANSLATION retained_intron ENSMUSG00000074129 Rpl13a ENSMUST00000209626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074129 Rpl13a ENSMUST00000209927 ENSMUSP00000148262 TRANSLATION protein_coding start - 5 177.0 0.0 5.57 0.0 19.8 0.0 -4,-2 0.0007 7 -2.0 MINOR ENSMUSG00000074129 Rpl13a ENSMUST00000209815 ENSMUSP00000148031 TRANSLATION protein_coding start/stop - 5 167.0 0.0 4.74 0.0 0.0 0.0 -4,-2 0.0029 8 -2.0 MINOR ENSMUSG00000074129 Rpl13a ENSMUST00000210918 ENSMUSP00000147877 TRANSLATION protein_coding stop - 5 122.0 0.0 3.66 0.0 28.8 0.0 -4,-6 0.0031 2 -2.0 MINOR ENSMUSG00000074129 Rpl13a ENSMUST00000211494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074129 Rpl13a ENSMUST00000210931 ENSMUSP00000147282 TRANSLATION protein_coding start - 5 69.0 0.0 2.49 0.0 0.0 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000066721 Zfp575 ENSMUST00000094705 ENSMUSP00000092294 TRANSLATION protein_coding - CCDS20956.1 1 239.0 23.0 1.0 8.4 104.3 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000110008 Or51f23b ENSMUST00000239110 ENSMUSP00000158910 TRANSLATION protein_coding - CCDS85366.1 - 314.0 0.0 1.0 11.5 396.4 10.0 -2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000110008 Or51f23b ENSMUST00000232246 ENSMUSP00000156236 TRANSLATION protein_coding - - - 312.0 0.0 1.0 7.6 396.4 10.0 -1,-2 0.741 - 13.887 MINOR ENSMUSG00000110008 Or51f23b ENSMUST00000210453 ENSMUSP00000148074 TRANSLATION protein_coding - CCDS85366.1 5 314.0 0.0 1.0 11.5 396.4 10.0 -2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070552 Mrgprx1 ENSMUST00000094390 ENSMUSP00000091954 TRANSLATION protein_coding - CCDS21299.1 1 322.0 0.0 0.64 0.0 26.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043831 Lysmd4 ENSMUST00000208512 ENSMUSP00000146860 TRANSLATION nonsense_mediated_decay - - 2 95.0 0.0 0.0 0.3 0.0 0.0 -4,-7 0.0823 2 -2.0 MINOR ENSMUSG00000043831 Lysmd4 ENSMUST00000208698 ENSMUSP00000146624 TRANSLATION protein_coding - - 2 94.0 0.0 0.0 0.3 0.0 0.0 -4,-7 0.0823 2 0.0 MINOR ENSMUSG00000043831 Lysmd4 ENSMUST00000208213 ENSMUSP00000146421 TRANSLATION nonsense_mediated_decay - - 2 102.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0168 2 -2.0 MINOR ENSMUSG00000043831 Lysmd4 ENSMUST00000208998 ENSMUSP00000146557 TRANSLATION protein_coding - CCDS21350.1 1 293.0 0.0 0.0 6.3 0.0 1.0 -4,-7 1.0 2 2.0 PRINCIPAL:1 ENSMUSG00000043831 Lysmd4 ENSMUST00000207823 ENSMUSP00000147179 TRANSLATION protein_coding - - 2 94.0 0.0 0.0 0.3 0.0 0.0 -4,-7 0.0823 2 0.0 MINOR ENSMUSG00000043831 Lysmd4 ENSMUST00000058771 ENSMUSP00000053341 TRANSLATION protein_coding - CCDS21350.1 1 293.0 0.0 0.0 6.3 0.0 1.0 -4,-7 1.0 2 2.0 PRINCIPAL:1 ENSMUSG00000043831 Lysmd4 ENSMUST00000207757 ENSMUSP00000147084 TRANSLATION protein_coding - - 3 94.0 0.0 0.0 0.3 0.0 0.0 -4,-7 0.0823 2 0.0 MINOR ENSMUSG00000043831 Lysmd4 ENSMUST00000208569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043831 Lysmd4 ENSMUST00000179106 ENSMUSP00000136151 TRANSLATION protein_coding - - 2 94.0 0.0 0.0 0.3 0.0 0.0 -4,-7 0.0823 2 0.0 MINOR ENSMUSG00000074277 Phldb3 ENSMUST00000073325 ENSMUSP00000073047 TRANSLATION protein_coding - CCDS52139.1 5 648.0 11.0 0.96 1.1 47.0 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000074277 Phldb3 ENSMUST00000205857 - NO_TRANSLATION retained_intron ENSMUSG00000074277 Phldb3 ENSMUST00000205330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074277 Phldb3 ENSMUST00000206422 ENSMUSP00000146187 TRANSLATION protein_coding - CCDS52139.1 5 648.0 11.0 0.96 1.1 47.0 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000009248 Ascl2 ENSMUST00000121862 ENSMUSP00000113012 TRANSLATION protein_coding - - - 195.0 0.0 0.6 6.4 61.3 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000009248 Ascl2 ENSMUST00000009392 ENSMUSP00000009392 TRANSLATION protein_coding - CCDS40194.1 1 263.0 0.0 0.6 0.1 61.3 0.0 -4,-5 0.3179 - 12.0 MINOR ENSMUSG00000096399 Vmn2r35 ENSMUST00000169683 ENSMUSP00000133007 TRANSLATION protein_coding - CCDS51998.1 5 861.0 4.0 1.97 0.1 375.8 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000051007 Gatd1 ENSMUST00000127556 - NO_TRANSLATION retained_intron ENSMUSG00000051007 Gatd1 ENSMUST00000156353 - NO_TRANSLATION retained_intron ENSMUSG00000051007 Gatd1 ENSMUST00000106008 ENSMUSP00000101630 TRANSLATION protein_coding - CCDS52444.1 1 220.0 0.0 6.5 11.9 0.0 0.0 0,-3 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000051007 Gatd1 ENSMUST00000140337 - NO_TRANSLATION retained_intron ENSMUSG00000051007 Gatd1 ENSMUST00000128006 - NO_TRANSLATION retained_intron ENSMUSG00000051007 Gatd1 ENSMUST00000142852 - NO_TRANSLATION retained_intron ENSMUSG00000051007 Gatd1 ENSMUST00000209276 - NO_TRANSLATION retained_intron ENSMUSG00000030515 Tarsl2 ENSMUST00000127354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030515 Tarsl2 ENSMUST00000126941 - NO_TRANSLATION retained_intron ENSMUSG00000030515 Tarsl2 ENSMUST00000206323 - NO_TRANSLATION retained_intron ENSMUSG00000030515 Tarsl2 ENSMUST00000032728 ENSMUSP00000032728 TRANSLATION protein_coding - CCDS21339.1 1 790.0 17.0 16.0 0.0 280.6 0.0 -4,-7 1.0 27 18.0 PRINCIPAL:1 ENSMUSG00000075701 Selenos ENSMUST00000101801 ENSMUSP00000099301 TRANSLATION protein_coding - CCDS39977.1 1 190.0 0.0 2.65 11.5 314.2 1.0 -4,-6 1.0 4 11.0 PRINCIPAL:3 ENSMUSG00000075701 Selenos ENSMUST00000206575 ENSMUSP00000145846 TRANSLATION protein_coding - - 2 187.0 0.0 2.65 11.5 306.7 1.0 -4,-6 0.7865 3 11.0 ALTERNATIVE:1 ENSMUSG00000075701 Selenos ENSMUST00000205279 ENSMUSP00000146218 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000075701 Selenos ENSMUST00000205965 - NO_TRANSLATION retained_intron ENSMUSG00000075701 Selenos ENSMUST00000206044 ENSMUSP00000145998 TRANSLATION protein_coding - - 3 100.0 0.0 1.5 1.1 179.5 0.0 -4,-5 0.0099 3 3.426 MINOR ENSMUSG00000014686 Ceacam16 ENSMUST00000208198 ENSMUSP00000147247 TRANSLATION protein_coding start - 3 122.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014686 Ceacam16 ENSMUST00000014830 ENSMUSP00000014830 TRANSLATION protein_coding - CCDS39805.1 1 426.0 0.0 6.0 4.2 74.0 0.0 2,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000003868 Ruvbl2 ENSMUST00000210439 ENSMUSP00000147688 TRANSLATION protein_coding stop - 5 237.0 13.0 6.58 0.0 278.3 0.0 -4,-6 0.0007 11 -2.0 MINOR ENSMUSG00000003868 Ruvbl2 ENSMUST00000211666 ENSMUSP00000148040 TRANSLATION protein_coding stop - 3 221.0 15.0 6.33 0.0 284.3 0.0 -4,-6 0.0007 9 -2.0 MINOR ENSMUSG00000003868 Ruvbl2 ENSMUST00000107771 ENSMUSP00000103400 TRANSLATION protein_coding - CCDS21243.1 1 463.0 20.0 13.24 30.6 612.8 0.0 -4,-6 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000003868 Ruvbl2 ENSMUST00000211478 - NO_TRANSLATION retained_intron ENSMUSG00000003868 Ruvbl2 ENSMUST00000211440 ENSMUSP00000148205 TRANSLATION nonsense_mediated_decay start - 5 134.0 15.0 3.83 0.0 182.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000003868 Ruvbl2 ENSMUST00000210271 ENSMUSP00000147650 TRANSLATION protein_coding start - 3 48.0 2.0 1.198 0.0 25.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003868 Ruvbl2 ENSMUST00000211214 ENSMUSP00000147502 TRANSLATION protein_coding - CCDS21243.1 1 463.0 20.0 13.24 30.6 612.8 0.0 -4,-6 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000003868 Ruvbl2 ENSMUST00000209426 ENSMUSP00000147423 TRANSLATION protein_coding start - 3 104.0 4.0 2.83 0.0 99.8 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000010755 Cars ENSMUST00000105909 ENSMUSP00000101529 TRANSLATION protein_coding - CCDS57597.1 1 748.0 25.0 4.55 15.1 0.0 0.0 -4,-7 0.818 27 14.8 ALTERNATIVE:1 ENSMUSG00000010755 Cars ENSMUST00000146904 - NO_TRANSLATION retained_intron ENSMUSG00000010755 Cars ENSMUST00000146462 - NO_TRANSLATION retained_intron ENSMUSG00000010755 Cars ENSMUST00000151574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010755 Cars ENSMUST00000010899 ENSMUSP00000010899 TRANSLATION protein_coding - CCDS40198.1 1 831.0 25.0 5.15 13.5 0.0 0.0 -4,-5 1.0 30 15.548 PRINCIPAL:3 ENSMUSG00000010755 Cars ENSMUST00000208575 ENSMUSP00000146835 TRANSLATION nonsense_mediated_decay start - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0138 2 -2.0 MINOR ENSMUSG00000010755 Cars ENSMUST00000134128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010755 Cars ENSMUST00000135032 - NO_TRANSLATION retained_intron ENSMUSG00000010755 Cars ENSMUST00000134753 - NO_TRANSLATION retained_intron ENSMUSG00000010755 Cars ENSMUST00000207168 - NO_TRANSLATION retained_intron ENSMUSG00000010755 Cars ENSMUST00000154022 ENSMUSP00000146754 TRANSLATION protein_coding stop - 3 53.0 3.0 1.1 0.0 0.0 0.0 -4,-7 0.0109 2 -2.0 MINOR ENSMUSG00000034875 Nudt19 ENSMUST00000040962 ENSMUSP00000047778 TRANSLATION protein_coding - CCDS21152.1 1 357.0 4.0 1.6 0.1 0.0 0.0 0,4 1.0 9 10.0 PRINCIPAL:1 ENSMUSG00000034875 Nudt19 ENSMUST00000123469 - NO_TRANSLATION retained_intron ENSMUSG00000034875 Nudt19 ENSMUST00000142930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030641 Ddias ENSMUST00000207931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030641 Ddias ENSMUST00000208356 ENSMUSP00000146512 TRANSLATION protein_coding stop - 5 185.0 4.0 1.524 0.0 44.9 0.0 -3,-1 0.0812 - -2.0 MINOR ENSMUSG00000030641 Ddias ENSMUST00000209074 ENSMUSP00000146534 TRANSLATION protein_coding stop - 3 49.0 4.0 0.864 0.0 0.0 0.0 -3,0 0.0015 - -2.0 MINOR ENSMUSG00000030641 Ddias ENSMUST00000032877 ENSMUSP00000032877 TRANSLATION protein_coding - CCDS40022.1 1 899.0 4.0 1.524 0.0 40.7 0.0 -3,-1 1.0 - 15.436 PRINCIPAL:1 ENSMUSG00000037772 Mrpl23 ENSMUST00000141098 - NO_TRANSLATION retained_intron ENSMUSG00000037772 Mrpl23 ENSMUST00000038675 ENSMUSP00000039784 TRANSLATION protein_coding - CCDS22032.1 1 146.0 0.0 3.83 11.9 0.0 0.0 -4,0 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000037772 Mrpl23 ENSMUST00000137345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037772 Mrpl23 ENSMUST00000209576 - NO_TRANSLATION retained_intron ENSMUSG00000037772 Mrpl23 ENSMUST00000210662 ENSMUSP00000148138 TRANSLATION protein_coding - - 5 172.0 0.0 3.5 0.0 0.0 0.0 -4,-7 0.0061 3 5.34 MINOR ENSMUSG00000037772 Mrpl23 ENSMUST00000210803 ENSMUSP00000147311 TRANSLATION protein_coding - - 3 101.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0366 2 3.342 MINOR ENSMUSG00000037772 Mrpl23 ENSMUST00000145002 - NO_TRANSLATION retained_intron ENSMUSG00000062598 Vmn1r178 ENSMUST00000226489 ENSMUSP00000153763 TRANSLATION protein_coding - - - 231.0 0.0 0.0 0.0 49.4 5.0 -4,-2 0.011 - 4.764 MINOR ENSMUSG00000062598 Vmn1r178 ENSMUST00000078593 ENSMUSP00000077666 TRANSLATION protein_coding - CCDS20935.1 - 304.0 0.0 0.0 0.4 62.2 7.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062598 Vmn1r178 ENSMUST00000227993 ENSMUSP00000154244 TRANSLATION protein_coding - CCDS20935.1 - 304.0 0.0 0.0 0.4 62.2 7.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062598 Vmn1r178 ENSMUST00000226450 ENSMUSP00000154764 TRANSLATION protein_coding - CCDS20935.1 - 304.0 0.0 0.0 0.4 62.2 7.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062598 Vmn1r178 ENSMUST00000226640 ENSMUSP00000154374 TRANSLATION protein_coding - - - 231.0 0.0 0.0 0.0 49.4 5.0 -4,-2 0.011 - 4.764 MINOR ENSMUSG00000063801 Ap3s2 ENSMUST00000206725 ENSMUSP00000146264 TRANSLATION nonsense_mediated_decay - - 3 42.0 0.0 0.75 0.0 22.7 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000063801 Ap3s2 ENSMUST00000075657 ENSMUSP00000075082 TRANSLATION protein_coding - CCDS21389.1 1 193.0 0.0 4.5 34.9 176.5 0.0 -4,0 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000030970 Ctbp2 ENSMUST00000172341 ENSMUSP00000127701 TRANSLATION protein_coding stop - 3 176.0 3.0 3.0 0.0 86.5 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000164896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030970 Ctbp2 ENSMUST00000155996 ENSMUSP00000132558 TRANSLATION protein_coding stop - 5 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000165534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030970 Ctbp2 ENSMUST00000169570 ENSMUSP00000130294 TRANSLATION protein_coding - CCDS52417.1 5 988.0 26.0 7.8 0.4 289.6 0.0 -4,-6 0.3679 9 18.0 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000166400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030970 Ctbp2 ENSMUST00000164739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030970 Ctbp2 ENSMUST00000168958 ENSMUSP00000132892 TRANSLATION protein_coding stop - 3 188.0 8.0 4.0 0.0 121.7 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000163601 ENSMUSP00000128944 TRANSLATION protein_coding stop - 3 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000168238 - NO_TRANSLATION retained_intron ENSMUSG00000030970 Ctbp2 ENSMUST00000171022 ENSMUSP00000132399 TRANSLATION protein_coding stop - 5 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000168762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030970 Ctbp2 ENSMUST00000167218 ENSMUSP00000133269 TRANSLATION protein_coding stop - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000033269 ENSMUSP00000033269 TRANSLATION protein_coding - CCDS21930.1 1 445.0 26.0 7.8 22.4 289.6 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000030970 Ctbp2 ENSMUST00000171882 ENSMUSP00000129312 TRANSLATION protein_coding stop - 5 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000171968 ENSMUSP00000130727 TRANSLATION protein_coding stop - 2 2.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0208 - -2.0 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000171727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030970 Ctbp2 ENSMUST00000166439 ENSMUSP00000127448 TRANSLATION protein_coding - - 1 420.0 26.0 7.8 10.5 289.6 0.0 -4,-5 0.6551 9 19.776 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000165457 ENSMUSP00000126126 TRANSLATION nonsense_mediated_decay - - 1 188.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000030970 Ctbp2 ENSMUST00000170459 ENSMUSP00000129590 TRANSLATION protein_coding stop - 3 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066760 Psg16 ENSMUST00000118367 ENSMUSP00000113025 TRANSLATION protein_coding - CCDS20861.2 1 386.0 0.0 3.95 0.0 123.4 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066760 Psg16 ENSMUST00000152671 ENSMUSP00000118977 TRANSLATION protein_coding stop - 2 262.0 0.0 2.2 0.0 80.6 0.0 -1,-3 0.0 - -2.0 MINOR ENSMUSG00000066760 Psg16 ENSMUST00000071399 ENSMUSP00000071348 TRANSLATION protein_coding - CCDS80666.1 1 395.0 0.0 3.2 0.0 109.5 0.0 -4,-6 0.1111 - 9.666 MINOR ENSMUSG00000066760 Psg16 ENSMUST00000131153 - NO_TRANSLATION retained_intron ENSMUSG00000030483 Cyp2b10 ENSMUST00000072438 ENSMUSP00000072264 TRANSLATION protein_coding - CCDS20999.1 1 491.0 53.0 8.8 5.0 507.9 0.0 3,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000030483 Cyp2b10 ENSMUST00000005477 ENSMUSP00000005477 TRANSLATION protein_coding - - 1 500.0 53.0 8.8 0.4 492.1 0.0 3,-2 0.1962 8 17.052 MINOR ENSMUSG00000030483 Cyp2b10 ENSMUST00000144140 - NO_TRANSLATION retained_intron ENSMUSG00000091528 Vmn2r-ps158 ENSMUST00000173815 ENSMUSP00000134441 TRANSLATION protein_coding - CCDS57544.1 5 854.0 3.0 3.26 0.0 400.4 0.0 2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000008496 Pou2f2 ENSMUST00000108418 ENSMUSP00000104056 TRANSLATION protein_coding - CCDS52144.1 1 583.0 0.0 3.8 0.4 189.4 0.0 -4,-5 0.3334 1 8.0 MINOR ENSMUSG00000008496 Pou2f2 ENSMUST00000108415 ENSMUSP00000104053 TRANSLATION protein_coding - CCDS39834.1 1 479.0 0.0 3.8 4.2 189.4 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:4 ENSMUSG00000008496 Pou2f2 ENSMUST00000175754 - NO_TRANSLATION retained_intron ENSMUSG00000008496 Pou2f2 ENSMUST00000098679 ENSMUSP00000096276 TRANSLATION protein_coding - - 1 549.0 0.0 3.8 0.0 189.4 0.0 -4,-5 0.0323 1 8.0 MINOR ENSMUSG00000008496 Pou2f2 ENSMUST00000108416 ENSMUSP00000104054 TRANSLATION protein_coding - - 1 424.0 0.0 3.8 0.0 189.4 0.0 -4,-5 0.0693 1 8.0 MINOR ENSMUSG00000008496 Pou2f2 ENSMUST00000147146 ENSMUSP00000118307 TRANSLATION protein_coding start/stop - 5 203.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000008496 Pou2f2 ENSMUST00000108417 ENSMUSP00000104055 TRANSLATION protein_coding - CCDS52145.1 1 485.0 0.0 3.8 3.1 189.4 0.0 -4,-5 0.8746 1 9.312 ALTERNATIVE:2 ENSMUSG00000008496 Pou2f2 ENSMUST00000108413 ENSMUSP00000104051 TRANSLATION protein_coding - - 1 400.0 0.0 3.8 2.2 189.4 0.0 -4,-5 0.5309 1 8.75 MINOR ENSMUSG00000008496 Pou2f2 ENSMUST00000175774 ENSMUSP00000135075 TRANSLATION protein_coding - CCDS52143.1 1 463.0 0.0 3.8 3.1 189.4 0.0 -4,-5 0.8378 1 9.312 ALTERNATIVE:2 ENSMUSG00000008496 Pou2f2 ENSMUST00000176408 ENSMUSP00000135326 TRANSLATION protein_coding - - 5 467.0 0.0 3.8 1.1 189.4 0.0 -4,-5 0.2616 1 8.062 MINOR ENSMUSG00000005575 Ube2m ENSMUST00000126827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005575 Ube2m ENSMUST00000131837 - NO_TRANSLATION retained_intron ENSMUSG00000005575 Ube2m ENSMUST00000138357 - NO_TRANSLATION retained_intron ENSMUSG00000005575 Ube2m ENSMUST00000125964 ENSMUSP00000122638 TRANSLATION protein_coding start - 2 171.0 0.0 4.0 0.0 133.1 0.0 -4,-5 0.0024 7 -2.0 MINOR ENSMUSG00000005575 Ube2m ENSMUST00000005714 ENSMUSP00000005714 TRANSLATION protein_coding - CCDS20825.1 1 183.0 0.0 4.48 25.2 136.1 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000005575 Ube2m ENSMUST00000165394 ENSMUSP00000132604 TRANSLATION protein_coding - CCDS52024.1 5 86.0 0.0 2.25 0.7 82.3 0.0 -4,-5 0.0145 3 4.314 MINOR ENSMUSG00000005575 Ube2m ENSMUST00000123541 ENSMUSP00000120234 TRANSLATION protein_coding start - 3 172.0 0.0 3.25 0.0 95.9 0.0 -4,-5 0.0029 6 -2.0 MINOR ENSMUSG00000005575 Ube2m ENSMUST00000156389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039013 Siglecf ENSMUST00000125335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039013 Siglecf ENSMUST00000122423 ENSMUSP00000113245 TRANSLATION protein_coding - CCDS21167.1 1 569.0 0.0 3.35 0.1 77.6 1.0 3,-2 0.5846 6 8.0 ALTERNATIVE:2 ENSMUSG00000039013 Siglecf ENSMUST00000121494 ENSMUSP00000112583 TRANSLATION protein_coding - - 1 523.0 0.0 3.35 0.0 77.6 1.0 3,-2 0.8532 5 8.0 PRINCIPAL:2 ENSMUSG00000039013 Siglecf ENSMUST00000145867 - NO_TRANSLATION retained_intron ENSMUSG00000039013 Siglecf ENSMUST00000206299 ENSMUSP00000146009 TRANSLATION protein_coding - CCDS85278.1 1 535.0 0.0 2.87 0.0 77.6 0.0 3,-2 0.4854 6 7.04 ALTERNATIVE:2 ENSMUSG00000039013 Siglecf ENSMUST00000012798 ENSMUSP00000012798 TRANSLATION protein_coding - CCDS21167.1 1 569.0 0.0 3.35 0.1 77.6 1.0 3,-2 0.5846 6 8.0 ALTERNATIVE:2 ENSMUSG00000094208 Vmn1r130 ENSMUST00000177936 ENSMUSP00000136091 TRANSLATION protein_coding - CCDS52099.1 - 307.0 0.0 0.0 0.4 55.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000030732 Chrdl2 ENSMUST00000032977 ENSMUSP00000032977 TRANSLATION protein_coding - CCDS21492.1 1 426.0 0.0 1.518 9.0 114.1 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000030732 Chrdl2 ENSMUST00000207641 - NO_TRANSLATION retained_intron ENSMUSG00000030732 Chrdl2 ENSMUST00000107084 ENSMUSP00000102699 TRANSLATION protein_coding - CCDS80755.1 1 433.0 0.0 1.518 0.0 114.1 0.0 -4,-5 0.3237 2 12.0 MINOR ENSMUSG00000030732 Chrdl2 ENSMUST00000144808 ENSMUSP00000120760 TRANSLATION protein_coding start - 5 221.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000040811 Eml2 ENSMUST00000120595 ENSMUSP00000112447 TRANSLATION protein_coding - CCDS85224.1 1 649.0 0.0 17.41 6.4 200.0 0.0 -4,-5 1.0 19 8.002 ALTERNATIVE:1 ENSMUSG00000040811 Eml2 ENSMUST00000141718 ENSMUSP00000146239 TRANSLATION protein_coding stop - 3 150.0 0.0 4.25 0.0 123.5 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000040811 Eml2 ENSMUST00000141792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040811 Eml2 ENSMUST00000148246 ENSMUSP00000115466 TRANSLATION nonsense_mediated_decay - - 5 427.0 0.0 10.844 0.0 151.6 0.0 -4,-5 0.0 15 -2.0 MINOR ENSMUSG00000040811 Eml2 ENSMUST00000048502 ENSMUSP00000037654 TRANSLATION protein_coding - CCDS52055.1 1 668.0 0.0 17.41 0.0 177.6 0.0 -4,-6 0.1016 17 5.402 MINOR ENSMUSG00000040811 Eml2 ENSMUST00000146095 - NO_TRANSLATION retained_intron ENSMUSG00000040811 Eml2 ENSMUST00000117338 ENSMUSP00000112491 TRANSLATION protein_coding - CCDS85223.1 5 841.0 0.0 18.41 2.1 200.0 0.0 -3,-5 0.8577 24 8.408 PRINCIPAL:3 ENSMUSG00000040811 Eml2 ENSMUST00000144054 ENSMUSP00000146046 TRANSLATION protein_coding stop - 2 82.0 0.0 2.0 0.0 107.3 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000078795 Ceacam15 ENSMUST00000108498 ENSMUSP00000104138 TRANSLATION protein_coding - CCDS52041.1 1 234.0 0.0 2.0 0.0 86.3 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054938 Or6z5 ENSMUST00000215302 ENSMUSP00000150503 TRANSLATION protein_coding - CCDS20778.1 5 313.0 0.0 1.0 7.2 148.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000054938 Or6z5 ENSMUST00000207658 ENSMUSP00000146519 TRANSLATION protein_coding - CCDS20778.1 2 313.0 0.0 1.0 7.2 148.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000054938 Or6z5 ENSMUST00000056144 ENSMUSP00000050553 TRANSLATION protein_coding - CCDS20778.1 - 313.0 0.0 1.0 7.2 148.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000005566 Trim28 ENSMUST00000005705 ENSMUSP00000005705 TRANSLATION protein_coding - CCDS20823.1 1 834.0 20.0 12.15 0.1 136.0 0.0 -2,0 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000005566 Trim28 ENSMUST00000129122 - NO_TRANSLATION retained_intron ENSMUSG00000005566 Trim28 ENSMUST00000125136 - NO_TRANSLATION retained_intron ENSMUSG00000005566 Trim28 ENSMUST00000148354 - NO_TRANSLATION retained_intron ENSMUSG00000005566 Trim28 ENSMUST00000123603 - NO_TRANSLATION retained_intron ENSMUSG00000005566 Trim28 ENSMUST00000149061 - NO_TRANSLATION retained_intron ENSMUSG00000005566 Trim28 ENSMUST00000209577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005566 Trim28 ENSMUST00000142421 - NO_TRANSLATION retained_intron ENSMUSG00000005566 Trim28 ENSMUST00000123778 - NO_TRANSLATION retained_intron ENSMUSG00000005566 Trim28 ENSMUST00000128951 - NO_TRANSLATION retained_intron ENSMUSG00000094493 Or2ag18 ENSMUST00000214840 ENSMUSP00000150320 TRANSLATION protein_coding - CCDS21671.1 5 316.0 0.0 1.0 9.9 156.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094493 Or2ag18 ENSMUST00000079936 ENSMUSP00000078855 TRANSLATION protein_coding - CCDS21671.1 - 316.0 0.0 1.0 9.9 156.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096283 Gm6176 ENSMUST00000178209 ENSMUSP00000137264 TRANSLATION protein_coding - - - 301.0 17.0 1.0 0.0 241.6 0.0 -4,-5 0.8085 - 18.0 PRINCIPAL:1 ENSMUSG00000096283 Gm6176 ENSMUST00000207633 ENSMUSP00000147031 TRANSLATION protein_coding - - 1 301.0 17.0 1.0 0.0 241.6 0.0 -4,-5 0.8085 - 18.0 PRINCIPAL:1 ENSMUSG00000023467 Tulp2 ENSMUST00000107759 ENSMUSP00000103388 TRANSLATION protein_coding - CCDS71960.1 1 450.0 5.0 5.4 0.0 300.4 0.0 -4,-6 0.3427 2 13.0 MINOR ENSMUSG00000023467 Tulp2 ENSMUST00000085331 ENSMUSP00000082438 TRANSLATION protein_coding - CCDS80720.1 1 438.0 5.0 5.4 0.0 300.4 0.0 -4,-6 0.2627 2 13.0 MINOR ENSMUSG00000023467 Tulp2 ENSMUST00000210868 ENSMUSP00000147710 TRANSLATION protein_coding - - 1 448.0 5.0 5.4 0.0 300.4 0.0 -4,-6 0.4398 2 13.0 MINOR ENSMUSG00000023467 Tulp2 ENSMUST00000024233 ENSMUSP00000024233 TRANSLATION protein_coding - CCDS39954.1 1 562.0 5.0 5.4 0.1 401.3 0.0 -4,-5 0.3061 2 13.0 PRINCIPAL:5 ENSMUSG00000023467 Tulp2 ENSMUST00000210532 ENSMUSP00000147359 TRANSLATION protein_coding stop - 5 77.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000023467 Tulp2 ENSMUST00000210813 ENSMUSP00000147596 TRANSLATION protein_coding - CCDS71961.1 1 457.0 5.0 5.07 0.1 294.9 0.0 -4,-6 0.1336 2 12.34 MINOR ENSMUSG00000023467 Tulp2 ENSMUST00000211413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023467 Tulp2 ENSMUST00000209763 ENSMUSP00000147833 TRANSLATION protein_coding stop - 5 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0594 - -2.0 MINOR ENSMUSG00000023467 Tulp2 ENSMUST00000210299 ENSMUSP00000147875 TRANSLATION protein_coding stop - 5 192.0 0.0 0.0 0.0 48.6 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000023467 Tulp2 ENSMUST00000107762 ENSMUSP00000103391 TRANSLATION protein_coding - CCDS39953.1 1 562.0 5.0 5.4 0.1 401.3 0.0 -4,-5 0.3061 2 13.0 ALTERNATIVE:2 ENSMUSG00000023467 Tulp2 ENSMUST00000107758 ENSMUSP00000103387 TRANSLATION protein_coding - - 5 457.0 5.0 5.07 0.1 294.9 0.0 -4,-6 0.0404 2 12.34 MINOR ENSMUSG00000005142 Man2b1 ENSMUST00000209264 ENSMUSP00000147441 TRANSLATION nonsense_mediated_decay - - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005142 Man2b1 ENSMUST00000209361 ENSMUSP00000147350 TRANSLATION nonsense_mediated_decay - - 3 54.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000005142 Man2b1 ENSMUST00000211379 - NO_TRANSLATION retained_intron ENSMUSG00000005142 Man2b1 ENSMUST00000211223 - NO_TRANSLATION retained_intron ENSMUSG00000005142 Man2b1 ENSMUST00000210991 - NO_TRANSLATION retained_intron ENSMUSG00000005142 Man2b1 ENSMUST00000034121 ENSMUSP00000034121 TRANSLATION protein_coding - CCDS22494.1 1 1013.0 5.0 19.87 0.3 727.7 0.0 1,-3 1.0 28 17.0 PRINCIPAL:1 ENSMUSG00000070713 Hmgn2-ps ENSMUST00000075602 ENSMUSP00000075031 TRANSLATION protein_coding - - - 90.0 0.0 0.0 22.9 113.4 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000031952 Chst5 ENSMUST00000034430 ENSMUSP00000034430 TRANSLATION protein_coding - CCDS22682.1 1 395.0 11.0 1.0 8.4 81.4 0.0 -1,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000004319 Clcn3 ENSMUST00000132234 - NO_TRANSLATION retained_intron ENSMUSG00000004319 Clcn3 ENSMUST00000093490 ENSMUSP00000091202 TRANSLATION protein_coding - CCDS22323.1 1 760.0 0.0 4.398 1.4 413.2 11.0 -4,-6 0.4739 7 8.048 MINOR ENSMUSG00000004319 Clcn3 ENSMUST00000056508 ENSMUSP00000058648 TRANSLATION protein_coding - CCDS22322.1 1 791.0 0.0 4.398 33.9 413.2 11.0 -4,-5 1.0 7 12.0 PRINCIPAL:4 ENSMUSG00000004319 Clcn3 ENSMUST00000145741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004319 Clcn3 ENSMUST00000004430 ENSMUSP00000004430 TRANSLATION protein_coding - CCDS52555.1 1 866.0 0.0 4.248 25.4 405.1 11.0 -4,-5 0.8374 6 10.668 MINOR ENSMUSG00000004319 Clcn3 ENSMUST00000110302 ENSMUSP00000105931 TRANSLATION protein_coding - - 5 839.0 0.0 4.248 27.5 405.1 11.0 -4,-5 0.7303 6 10.92 MINOR ENSMUSG00000004319 Clcn3 ENSMUST00000129672 - NO_TRANSLATION retained_intron ENSMUSG00000004319 Clcn3 ENSMUST00000110301 ENSMUSP00000105930 TRANSLATION protein_coding - CCDS52554.1 1 818.0 0.0 4.398 31.7 413.2 11.0 -4,-5 0.9486 7 11.732 ALTERNATIVE:1 ENSMUSG00000004319 Clcn3 ENSMUST00000145493 - NO_TRANSLATION retained_intron ENSMUSG00000004319 Clcn3 ENSMUST00000147824 - NO_TRANSLATION retained_intron ENSMUSG00000031896 Ctrl ENSMUST00000212561 - NO_TRANSLATION retained_intron ENSMUSG00000031896 Ctrl ENSMUST00000034368 ENSMUSP00000034368 TRANSLATION protein_coding - CCDS22620.1 1 264.0 6.0 5.03 31.1 244.9 0.0 3,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000031727 Pmfbp1 ENSMUST00000212003 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031727 Pmfbp1 ENSMUST00000034162 ENSMUSP00000034162 TRANSLATION protein_coding - CCDS40468.1 1 1022.0 0.0 0.68 1.2 0.0 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000031601 Cnot7 ENSMUST00000149992 ENSMUSP00000117304 TRANSLATION protein_coding - CCDS22253.1 1 285.0 3.0 6.0 36.9 77.6 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000031601 Cnot7 ENSMUST00000139558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031601 Cnot7 ENSMUST00000144970 - NO_TRANSLATION retained_intron ENSMUSG00000031601 Cnot7 ENSMUST00000132032 ENSMUSP00000122933 TRANSLATION protein_coding - CCDS22253.1 1 285.0 3.0 6.0 36.9 77.6 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000031601 Cnot7 ENSMUST00000135269 ENSMUSP00000119319 TRANSLATION protein_coding - CCDS72114.1 1 248.0 2.0 5.0 3.1 68.2 0.0 -4,-5 0.0955 2 11.509 MINOR ENSMUSG00000031601 Cnot7 ENSMUST00000142455 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031601 Cnot7 ENSMUST00000034012 ENSMUSP00000034012 TRANSLATION protein_coding - CCDS22253.1 1 285.0 3.0 6.0 36.9 77.6 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000031601 Cnot7 ENSMUST00000146280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031601 Cnot7 ENSMUST00000128237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031601 Cnot7 ENSMUST00000132200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031601 Cnot7 ENSMUST00000132740 - NO_TRANSLATION retained_intron ENSMUSG00000038515 Grtp1 ENSMUST00000210317 ENSMUSP00000148042 TRANSLATION protein_coding - CCDS22107.1 1 342.0 0.0 7.35 10.0 188.8 0.0 -4,-7 1.0 5 14.868 PRINCIPAL:1 ENSMUSG00000038515 Grtp1 ENSMUST00000209895 ENSMUSP00000148073 TRANSLATION nonsense_mediated_decay - - 1 197.0 0.0 4.1 1.0 100.9 0.0 -4,-7 0.009 2 -2.0 MINOR ENSMUSG00000038515 Grtp1 ENSMUST00000209465 - NO_TRANSLATION retained_intron ENSMUSG00000038515 Grtp1 ENSMUST00000209516 ENSMUSP00000147466 TRANSLATION nonsense_mediated_decay start - 3 30.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038515 Grtp1 ENSMUST00000211128 ENSMUSP00000147337 TRANSLATION protein_coding - - 1 321.0 0.0 6.765 0.0 188.8 0.0 -4,-7 0.0094 3 10.698 MINOR ENSMUSG00000038515 Grtp1 ENSMUST00000165605 ENSMUSP00000130324 TRANSLATION protein_coding - - 1 359.0 0.0 7.416 0.0 165.8 0.0 -4,-7 0.0372 5 10.62 MINOR ENSMUSG00000038515 Grtp1 ENSMUST00000209691 ENSMUSP00000147856 TRANSLATION protein_coding - - 5 289.0 0.0 6.35 1.4 166.5 0.0 -4,-2 0.0252 3 8.664 MINOR ENSMUSG00000045232 Rln3 ENSMUST00000061923 ENSMUSP00000051392 TRANSLATION protein_coding - CCDS22466.1 1 141.0 0.0 1.1 0.4 25.5 0.0 3,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000031442 Mcf2l ENSMUST00000156560 ENSMUSP00000122792 TRANSLATION protein_coding stop - 2 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000110866 ENSMUSP00000106490 TRANSLATION protein_coding - CCDS52483.1 1 1097.0 0.0 12.729 0.0 269.6 0.0 -4,-5 0.4448 21 12.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000110873 ENSMUSP00000106497 TRANSLATION protein_coding stop - 5 866.0 0.0 11.399 0.0 208.6 0.0 -4,-5 0.0054 19 -2.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000238472 ENSMUSP00000158824 TRANSLATION protein_coding stop - - 97.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000098927 ENSMUSP00000096528 TRANSLATION protein_coding - - 5 1067.0 0.0 11.649 0.0 244.7 0.0 -4,-2 0.0489 20 8.346 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000127229 - NO_TRANSLATION retained_intron ENSMUSG00000031442 Mcf2l ENSMUST00000134227 ENSMUSP00000116731 TRANSLATION protein_coding start/stop - 5 254.0 0.0 3.5 0.0 26.5 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000138387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031442 Mcf2l ENSMUST00000134989 - NO_TRANSLATION retained_intron ENSMUSG00000031442 Mcf2l ENSMUST00000173099 ENSMUSP00000133776 TRANSLATION protein_coding - - 5 1059.0 0.0 11.649 0.0 244.7 0.0 -2,-5 0.0395 20 8.346 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000145067 ENSMUSP00000133577 TRANSLATION protein_coding - - 1 1118.0 0.0 12.729 0.0 263.4 0.0 -4,-7 0.1804 23 11.628 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000139776 ENSMUSP00000120946 TRANSLATION protein_coding start/stop - 5 188.0 0.0 1.33 0.0 24.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000156405 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031442 Mcf2l ENSMUST00000173006 ENSMUSP00000134147 TRANSLATION protein_coding stop - 5 757.0 0.0 8.399 0.0 203.4 0.0 -4,-5 0.0036 13 -2.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000145892 ENSMUSP00000114758 TRANSLATION protein_coding start/stop - 5 151.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000110871 ENSMUSP00000106495 TRANSLATION protein_coding - - 5 1046.0 0.0 11.399 0.0 244.7 0.0 -1,-3 0.044 19 7.848 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000130302 - NO_TRANSLATION retained_intron ENSMUSG00000031442 Mcf2l ENSMUST00000110867 ENSMUSP00000106491 TRANSLATION protein_coding - CCDS52482.1 1 1101.0 0.0 12.729 0.0 269.6 0.0 -4,-5 0.4514 22 12.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000110879 ENSMUSP00000106503 TRANSLATION protein_coding - - 5 1125.0 0.0 12.729 7.9 269.6 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000031442 Mcf2l ENSMUST00000123811 ENSMUSP00000123434 TRANSLATION protein_coding start - 5 295.0 0.0 5.16 0.0 55.6 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000095456 ENSMUSP00000093108 TRANSLATION protein_coding - - 1 1149.0 0.0 12.729 0.4 269.6 0.0 -4,-5 0.3529 21 12.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000126905 ENSMUSP00000118540 TRANSLATION protein_coding start - 1 807.0 0.0 12.229 0.0 228.0 0.0 -4,-5 0.0154 18 -2.0 MINOR ENSMUSG00000031442 Mcf2l ENSMUST00000110876 ENSMUSP00000106500 TRANSLATION protein_coding - CCDS40225.2 1 1175.0 0.0 12.729 0.1 269.6 0.0 -4,-5 0.4682 23 12.0 MINOR ENSMUSG00000031549 Ido2 ENSMUST00000138335 - NO_TRANSLATION retained_intron ENSMUSG00000031549 Ido2 ENSMUST00000138155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031549 Ido2 ENSMUST00000121992 ENSMUSP00000113979 TRANSLATION protein_coding - CCDS40298.2 1 405.0 0.0 6.6 10.1 402.5 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000031549 Ido2 ENSMUST00000140417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031974 Abcb10 ENSMUST00000075578 ENSMUSP00000075011 TRANSLATION protein_coding - CCDS22766.1 1 715.0 12.0 10.75 0.1 319.3 0.0 -2,2 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000052837 Junb ENSMUST00000064922 ENSMUSP00000064680 TRANSLATION protein_coding - CCDS22488.1 - 344.0 0.0 0.2 8.3 326.9 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000052837 Junb ENSMUST00000209372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031481 Tpte ENSMUST00000077194 ENSMUSP00000076435 TRANSLATION protein_coding - CCDS22173.1 1 664.0 10.0 10.3 0.0 113.3 3.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000031481 Tpte ENSMUST00000211747 ENSMUSP00000147872 TRANSLATION nonsense_mediated_decay - - 1 591.0 10.0 8.15 0.0 26.6 3.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000031481 Tpte ENSMUST00000211497 ENSMUSP00000147781 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051906 Cd209f ENSMUST00000145007 ENSMUSP00000116355 TRANSLATION protein_coding - CCDS52472.1 1 255.0 16.0 4.575 0.3 73.8 2.0 -4,-6 0.1004 1 13.502 ALTERNATIVE:2 ENSMUSG00000051906 Cd209f ENSMUST00000156276 - NO_TRANSLATION retained_intron ENSMUSG00000051906 Cd209f ENSMUST00000128568 - NO_TRANSLATION retained_intron ENSMUSG00000051906 Cd209f ENSMUST00000207294 - NO_TRANSLATION retained_intron ENSMUSG00000051906 Cd209f ENSMUST00000138439 ENSMUSP00000119810 TRANSLATION protein_coding - - 1 274.0 16.0 4.825 0.0 73.8 2.0 -4,-6 0.75 1 14.0 PRINCIPAL:2 ENSMUSG00000031595 Pdgfrl ENSMUST00000143216 - NO_TRANSLATION retained_intron ENSMUSG00000031595 Pdgfrl ENSMUST00000034004 ENSMUSP00000034004 TRANSLATION protein_coding - CCDS22259.1 1 375.0 0.0 5.0 13.9 32.0 0.0 1,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038102 Trappc11 ENSMUST00000125065 - NO_TRANSLATION retained_intron ENSMUSG00000038102 Trappc11 ENSMUST00000131551 - NO_TRANSLATION retained_intron ENSMUSG00000038102 Trappc11 ENSMUST00000120987 ENSMUSP00000113779 TRANSLATION protein_coding - - 1 176.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 3 0.0 MINOR ENSMUSG00000038102 Trappc11 ENSMUST00000123958 - NO_TRANSLATION retained_intron ENSMUSG00000038102 Trappc11 ENSMUST00000039061 ENSMUSP00000047562 TRANSLATION protein_coding - CCDS22296.1 1 1133.0 0.0 0.0 30.2 340.5 0.0 -4,-7 1.0 23 10.0 PRINCIPAL:1 ENSMUSG00000091764 Zfp964 ENSMUST00000204285 ENSMUSP00000145354 TRANSLATION protein_coding - CCDS85549.1 1 472.0 40.0 0.8 0.4 210.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000091764 Zfp964 ENSMUST00000204062 - NO_TRANSLATION retained_intron ENSMUSG00000003808 Farsa ENSMUST00000156970 ENSMUSP00000120609 TRANSLATION nonsense_mediated_decay - - 1 105.0 0.0 1.5 0.0 24.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003808 Farsa ENSMUST00000129595 - NO_TRANSLATION retained_intron ENSMUSG00000003808 Farsa ENSMUST00000003906 ENSMUSP00000003906 TRANSLATION protein_coding - CCDS22480.2 1 508.0 14.0 13.08 9.1 328.1 0.0 -4,-5 1.0 11 17.0 PRINCIPAL:4 ENSMUSG00000003808 Farsa ENSMUST00000141480 - NO_TRANSLATION retained_intron ENSMUSG00000003808 Farsa ENSMUST00000144404 - NO_TRANSLATION retained_intron ENSMUSG00000003808 Farsa ENSMUST00000109754 ENSMUSP00000105376 TRANSLATION protein_coding - - 1 507.0 14.0 13.08 9.1 328.6 0.0 -4,-5 0.8371 11 17.0 ALTERNATIVE:1 ENSMUSG00000048500 Defb15 ENSMUST00000062586 ENSMUSP00000059763 TRANSLATION protein_coding - CCDS40288.1 1 79.0 0.0 1.0 0.0 27.8 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000046258 Adam29 ENSMUST00000053441 ENSMUSP00000054292 TRANSLATION protein_coding - CCDS22311.1 1 763.0 17.0 0.16 0.3 401.5 0.0 1,-3 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000031637 Lrp2bp ENSMUST00000132341 ENSMUSP00000147936 TRANSLATION nonsense_mediated_decay start - 3 68.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000031637 Lrp2bp ENSMUST00000110381 ENSMUSP00000106010 TRANSLATION protein_coding - CCDS22286.1 1 346.0 0.0 7.75 13.4 117.4 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031637 Lrp2bp ENSMUST00000145597 ENSMUSP00000135210 TRANSLATION nonsense_mediated_decay - - 5 213.0 0.0 4.0 0.0 68.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031637 Lrp2bp ENSMUST00000066451 ENSMUSP00000067177 TRANSLATION protein_coding - - 1 367.0 0.0 7.75 0.0 117.4 0.0 -4,-6 0.0645 - 12.0 MINOR ENSMUSG00000031637 Lrp2bp ENSMUST00000138230 - NO_TRANSLATION retained_intron ENSMUSG00000031637 Lrp2bp ENSMUST00000110380 ENSMUSP00000106009 TRANSLATION protein_coding - CCDS22286.1 1 346.0 0.0 7.75 13.4 117.4 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031521 Aga ENSMUST00000209811 ENSMUSP00000147487 TRANSLATION nonsense_mediated_decay - - 1 55.0 0.0 0.8 0.0 0.0 0.0 3,-2 0.0029 - -2.0 MINOR ENSMUSG00000031521 Aga ENSMUST00000033920 ENSMUSP00000033920 TRANSLATION protein_coding - CCDS22304.1 1 346.0 9.0 8.23 4.7 285.4 0.0 3,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000031521 Aga ENSMUST00000211424 ENSMUSP00000148133 TRANSLATION protein_coding - CCDS85539.1 1 336.0 8.0 7.9 1.0 247.0 0.0 3,-2 0.2536 8 14.37 MINOR ENSMUSG00000031816 Mthfsd ENSMUST00000133058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031816 Mthfsd ENSMUST00000133037 ENSMUSP00000117429 TRANSLATION protein_coding - - 5 319.0 13.0 4.45 0.0 109.1 0.0 -4,-5 0.0063 4 14.82 MINOR ENSMUSG00000031816 Mthfsd ENSMUST00000140260 - NO_TRANSLATION retained_intron ENSMUSG00000031816 Mthfsd ENSMUST00000116415 ENSMUSP00000112116 TRANSLATION protein_coding - CCDS52691.1 1 372.0 13.0 5.85 0.0 115.4 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000031816 Mthfsd ENSMUST00000145991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031816 Mthfsd ENSMUST00000139782 ENSMUSP00000115382 TRANSLATION protein_coding - - 5 300.0 11.0 4.15 0.0 99.5 0.0 -4,-5 0.0077 4 12.312 MINOR ENSMUSG00000031816 Mthfsd ENSMUST00000128052 ENSMUSP00000148803 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000031816 Mthfsd ENSMUST00000151576 ENSMUSP00000148598 TRANSLATION nonsense_mediated_decay - - 3 86.0 2.0 1.15 0.0 23.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031816 Mthfsd ENSMUST00000213028 - NO_TRANSLATION retained_intron ENSMUSG00000031816 Mthfsd ENSMUST00000047282 ENSMUSP00000044172 TRANSLATION protein_coding - CCDS22723.1 1 353.0 11.0 5.55 0.0 106.4 0.0 -4,-6 0.0413 4 15.528 MINOR ENSMUSG00000031816 Mthfsd ENSMUST00000134758 ENSMUSP00000148797 TRANSLATION nonsense_mediated_decay - - 5 67.0 0.0 0.85 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031816 Mthfsd ENSMUST00000149718 - NO_TRANSLATION retained_intron ENSMUSG00000031816 Mthfsd ENSMUST00000126431 ENSMUSP00000119673 TRANSLATION protein_coding stop - 5 279.0 13.0 3.75 0.0 109.1 0.0 -4,-7 0.0087 2 -2.0 MINOR ENSMUSG00000031816 Mthfsd ENSMUST00000156606 - NO_TRANSLATION retained_intron ENSMUSG00000031816 Mthfsd ENSMUST00000138908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031816 Mthfsd ENSMUST00000128503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031808 Slc27a1 ENSMUST00000212211 - NO_TRANSLATION retained_intron ENSMUSG00000031808 Slc27a1 ENSMUST00000034267 ENSMUSP00000034267 TRANSLATION protein_coding - CCDS40386.1 1 646.0 21.0 7.18 13.4 234.0 0.0 2,-3 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000031808 Slc27a1 ENSMUST00000211886 - NO_TRANSLATION retained_intron ENSMUSG00000031808 Slc27a1 ENSMUST00000212225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031808 Slc27a1 ENSMUST00000212889 ENSMUSP00000148768 TRANSLATION protein_coding - CCDS40386.1 1 646.0 21.0 7.18 13.4 234.0 0.0 2,-3 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000031808 Slc27a1 ENSMUST00000213100 ENSMUSP00000148616 TRANSLATION protein_coding stop - 3 80.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0019 1 -2.0 MINOR ENSMUSG00000031808 Slc27a1 ENSMUST00000211811 - NO_TRANSLATION retained_intron ENSMUSG00000031808 Slc27a1 ENSMUST00000212989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031808 Slc27a1 ENSMUST00000212111 ENSMUSP00000148305 TRANSLATION protein_coding stop - 2 182.0 0.0 0.9 0.0 71.9 0.0 2,-3 0.0027 4 -2.0 MINOR ENSMUSG00000031775 Pllp ENSMUST00000212555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031775 Pllp ENSMUST00000034227 ENSMUSP00000034227 TRANSLATION protein_coding - CCDS22546.1 1 182.0 0.0 2.14 16.4 69.9 4.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031775 Pllp ENSMUST00000213043 ENSMUSP00000148729 TRANSLATION protein_coding start - 3 102.0 0.0 1.1 0.0 0.0 2.0 -4,-5 0.0017 1 -2.0 MINOR ENSMUSG00000074434 Defa28 ENSMUST00000098887 ENSMUSP00000096486 TRANSLATION protein_coding - CCDS52511.1 5 94.0 0.0 1.0 0.1 107.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040631 Dok4 ENSMUST00000046461 ENSMUSP00000043554 TRANSLATION protein_coding - CCDS40443.1 1 325.0 0.0 3.006 16.2 102.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040631 Dok4 ENSMUST00000212810 ENSMUSP00000148355 TRANSLATION protein_coding - CCDS40443.1 1 325.0 0.0 3.006 16.2 102.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040631 Dok4 ENSMUST00000211892 ENSMUSP00000148825 TRANSLATION protein_coding stop - 3 39.0 0.0 0.04 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040631 Dok4 ENSMUST00000212745 ENSMUSP00000148698 TRANSLATION protein_coding stop - 3 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033732 Sf3b3 ENSMUST00000042012 ENSMUSP00000045073 TRANSLATION protein_coding - CCDS22665.1 1 1217.0 0.0 22.46 29.4 336.3 0.0 -4,-2 1.0 32 16.0 PRINCIPAL:1 ENSMUSG00000033732 Sf3b3 ENSMUST00000212515 - NO_TRANSLATION retained_intron ENSMUSG00000033732 Sf3b3 ENSMUST00000212182 - NO_TRANSLATION retained_intron ENSMUSG00000033732 Sf3b3 ENSMUST00000212843 - NO_TRANSLATION retained_intron ENSMUSG00000033732 Sf3b3 ENSMUST00000212613 - NO_TRANSLATION retained_intron ENSMUSG00000036246 Gmip ENSMUST00000123453 ENSMUSP00000116542 TRANSLATION protein_coding - - 1 839.0 8.0 8.025 0.0 160.1 0.0 -4,-5 0.7956 15 12.0 PRINCIPAL:2 ENSMUSG00000036246 Gmip ENSMUST00000156620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036246 Gmip ENSMUST00000144540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036246 Gmip ENSMUST00000154903 - NO_TRANSLATION retained_intron ENSMUSG00000036246 Gmip ENSMUST00000138269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036246 Gmip ENSMUST00000036074 ENSMUSP00000045676 TRANSLATION protein_coding - CCDS22350.1 1 971.0 8.0 7.925 0.4 160.1 0.0 -4,-5 0.406 18 11.802 ALTERNATIVE:2 ENSMUSG00000036246 Gmip ENSMUST00000143744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036246 Gmip ENSMUST00000127114 - NO_TRANSLATION retained_intron ENSMUSG00000036246 Gmip ENSMUST00000142659 ENSMUSP00000114525 TRANSLATION protein_coding start - 2 115.0 0.0 0.04 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031479 Vps36 ENSMUST00000153949 - NO_TRANSLATION retained_intron ENSMUSG00000031479 Vps36 ENSMUST00000033866 ENSMUSP00000033866 TRANSLATION protein_coding - CCDS22171.1 1 386.0 0.0 10.53 35.5 206.2 0.0 -4,-6 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000005470 Asf1b ENSMUST00000005607 ENSMUSP00000005607 TRANSLATION protein_coding - CCDS22462.1 1 202.0 0.0 3.6 36.9 238.9 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000005470 Asf1b ENSMUST00000124913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005470 Asf1b ENSMUST00000124174 - NO_TRANSLATION retained_intron ENSMUSG00000031770 Herpud1 ENSMUST00000161085 ENSMUSP00000148426 TRANSLATION nonsense_mediated_decay start - 3 62.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000031770 Herpud1 ENSMUST00000159450 ENSMUSP00000148775 TRANSLATION nonsense_mediated_decay start - 3 36.0 6.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 - -2.0 MINOR ENSMUSG00000031770 Herpud1 ENSMUST00000161576 ENSMUSP00000124201 TRANSLATION protein_coding - CCDS22541.1 1 391.0 0.0 2.58 7.7 49.3 2.0 -4,-5 1.0 2 10.0 PRINCIPAL:4 ENSMUSG00000031770 Herpud1 ENSMUST00000034220 ENSMUSP00000034220 TRANSLATION protein_coding - - 1 390.0 0.0 2.43 7.7 50.6 2.0 -4,-5 0.8352 2 9.652 ALTERNATIVE:1 ENSMUSG00000031770 Herpud1 ENSMUST00000160866 - NO_TRANSLATION retained_intron ENSMUSG00000031770 Herpud1 ENSMUST00000211982 ENSMUSP00000148581 TRANSLATION protein_coding start - 5 179.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000055932 Fto ENSMUST00000140276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055932 Fto ENSMUST00000136802 ENSMUSP00000147603 TRANSLATION protein_coding - - 1 413.0 3.0 4.4 1.2 519.9 0.0 -4,-5 0.0332 11 5.428 MINOR ENSMUSG00000055932 Fto ENSMUST00000128081 ENSMUSP00000147548 TRANSLATION protein_coding - - 1 481.0 3.0 5.4 0.0 557.9 0.0 -4,-5 0.0202 13 9.654 MINOR ENSMUSG00000055932 Fto ENSMUST00000069718 ENSMUSP00000068380 TRANSLATION protein_coding - CCDS22521.1 1 502.0 3.0 6.4 7.8 613.7 0.0 -4,-5 1.0 13 17.0 PRINCIPAL:1 ENSMUSG00000055932 Fto ENSMUST00000149913 ENSMUSP00000123142 TRANSLATION protein_coding stop - 3 149.0 0.0 1.45 0.0 126.7 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000055932 Fto ENSMUST00000166548 ENSMUSP00000127680 TRANSLATION protein_coding stop - 5 270.0 3.0 2.4 0.0 269.4 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000055932 Fto ENSMUST00000125471 ENSMUSP00000147563 TRANSLATION protein_coding - - 1 316.0 2.0 1.65 0.0 341.6 0.0 -4,-5 0.0007 10 2.001 MINOR ENSMUSG00000056820 Tsnax ENSMUST00000212603 ENSMUSP00000148470 TRANSLATION protein_coding - - 1 168.0 0.0 3.5 0.7 101.9 0.0 -4,-5 0.0073 8 4.998 MINOR ENSMUSG00000056820 Tsnax ENSMUST00000075896 ENSMUSP00000075290 TRANSLATION protein_coding - CCDS22778.1 1 290.0 0.0 4.0 15.9 210.0 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000035824 Tk2 ENSMUST00000212209 ENSMUSP00000148733 TRANSLATION nonsense_mediated_decay - - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 1 -2.0 MINOR ENSMUSG00000035824 Tk2 ENSMUST00000212854 ENSMUSP00000148375 TRANSLATION nonsense_mediated_decay start - 3 64.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0 - -2.0 MINOR ENSMUSG00000035824 Tk2 ENSMUST00000212279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035824 Tk2 ENSMUST00000211995 ENSMUSP00000148384 TRANSLATION nonsense_mediated_decay - - 1 136.0 8.0 2.566 0.0 81.4 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000035824 Tk2 ENSMUST00000212805 - NO_TRANSLATION retained_intron ENSMUSG00000035824 Tk2 ENSMUST00000212165 - NO_TRANSLATION retained_intron ENSMUSG00000035824 Tk2 ENSMUST00000050211 ENSMUSP00000053616 TRANSLATION protein_coding - CCDS22573.1 1 270.0 15.0 6.83 5.0 218.3 0.0 -4,0 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000035824 Tk2 ENSMUST00000212275 ENSMUSP00000148642 TRANSLATION protein_coding - CCDS22573.1 2 270.0 15.0 6.83 5.0 218.3 0.0 -4,0 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000039842 Mcph1 ENSMUST00000153133 - NO_TRANSLATION retained_intron ENSMUSG00000039842 Mcph1 ENSMUST00000039412 ENSMUSP00000037000 TRANSLATION protein_coding - CCDS22124.1 1 822.0 0.0 6.75 0.0 562.2 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000039842 Mcph1 ENSMUST00000124910 ENSMUSP00000131698 TRANSLATION nonsense_mediated_decay - - 1 133.0 0.0 3.0 0.0 63.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039842 Mcph1 ENSMUST00000133417 ENSMUSP00000121636 TRANSLATION protein_coding start/stop - 3 256.0 0.0 0.0 0.0 141.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039842 Mcph1 ENSMUST00000146819 ENSMUSP00000131616 TRANSLATION protein_coding - - 1 600.0 0.0 3.0 0.0 532.5 0.0 -4,-5 0.0265 3 4.218 MINOR ENSMUSG00000039842 Mcph1 ENSMUST00000141244 ENSMUSP00000119267 TRANSLATION protein_coding start - 3 112.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031577 Tti2 ENSMUST00000098842 ENSMUSP00000096441 TRANSLATION protein_coding - CCDS22221.1 1 512.0 0.0 0.0 3.2 48.8 0.0 -4,-5 1.0 4 1.0 PRINCIPAL:2 ENSMUSG00000031577 Tti2 ENSMUST00000209851 ENSMUSP00000148056 TRANSLATION protein_coding - CCDS22221.1 1 512.0 0.0 0.0 3.2 48.8 0.0 -4,-5 1.0 4 1.0 PRINCIPAL:2 ENSMUSG00000031577 Tti2 ENSMUST00000210129 ENSMUSP00000147956 TRANSLATION protein_coding - CCDS85525.1 1 537.0 0.0 0.0 0.0 48.8 0.0 -4,-5 0.1672 4 0.0 ALTERNATIVE:2 ENSMUSG00000031577 Tti2 ENSMUST00000209986 ENSMUSP00000147846 TRANSLATION nonsense_mediated_decay - CCDS22221.1 1 512.0 0.0 0.0 3.2 48.8 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000036510 Cdh8 ENSMUST00000126895 - NO_TRANSLATION retained_intron ENSMUSG00000036510 Cdh8 ENSMUST00000128860 ENSMUSP00000117326 TRANSLATION protein_coding - CCDS40448.1 1 799.0 50.0 9.6 30.5 443.0 4.0 2,-2 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000036510 Cdh8 ENSMUST00000142129 ENSMUSP00000114507 TRANSLATION protein_coding - CCDS72156.1 1 711.0 50.0 8.9 4.0 325.3 4.0 2,-2 0.1354 5 11.01 MINOR ENSMUSG00000036510 Cdh8 ENSMUST00000142475 ENSMUSP00000115977 TRANSLATION protein_coding - - 1 247.0 13.0 2.65 0.0 80.9 1.0 2,-2 0.0029 1 0.0 MINOR ENSMUSG00000036510 Cdh8 ENSMUST00000093249 ENSMUSP00000090935 TRANSLATION protein_coding - CCDS22569.1 1 716.0 50.0 8.9 0.4 325.6 4.0 2,-2 0.074 5 10.602 MINOR ENSMUSG00000036510 Cdh8 ENSMUST00000145601 ENSMUSP00000122493 TRANSLATION nonsense_mediated_decay - - 1 509.0 41.0 6.3 0.0 213.5 1.0 2,-2 0.0026 3 -2.0 MINOR ENSMUSG00000036510 Cdh8 ENSMUST00000155527 ENSMUSP00000123619 TRANSLATION protein_coding - CCDS72155.1 1 754.0 50.0 9.2 0.0 328.1 4.0 2,-2 0.1785 5 11.202 MINOR ENSMUSG00000031667 Aktip ENSMUST00000209444 ENSMUSP00000148050 TRANSLATION protein_coding stop - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000031667 Aktip ENSMUST00000211050 ENSMUSP00000147768 TRANSLATION nonsense_mediated_decay start - 3 32.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000031667 Aktip ENSMUST00000120426 ENSMUSP00000113379 TRANSLATION protein_coding - CCDS85582.1 1 258.0 0.0 5.95 3.0 82.3 0.0 -4,-6 0.2896 1 12.312 MINOR ENSMUSG00000031667 Aktip ENSMUST00000125257 ENSMUSP00000119277 TRANSLATION protein_coding - CCDS22519.1 1 292.0 0.0 5.95 26.8 82.3 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031667 Aktip ENSMUST00000210426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031667 Aktip ENSMUST00000109609 ENSMUSP00000105238 TRANSLATION protein_coding - CCDS22519.1 1 292.0 0.0 5.95 26.8 82.3 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031667 Aktip ENSMUST00000211042 - NO_TRANSLATION retained_intron ENSMUSG00000031667 Aktip ENSMUST00000153201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031667 Aktip ENSMUST00000120213 ENSMUSP00000112375 TRANSLATION protein_coding - CCDS22519.1 1 292.0 0.0 5.95 26.8 82.3 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031667 Aktip ENSMUST00000120349 ENSMUSP00000113769 TRANSLATION protein_coding - CCDS22519.1 1 292.0 0.0 5.95 26.8 82.3 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031667 Aktip ENSMUST00000211576 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031667 Aktip ENSMUST00000209311 ENSMUSP00000147841 TRANSLATION protein_coding stop - 2 51.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000031667 Aktip ENSMUST00000211618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031661 Nkd1 ENSMUST00000211113 ENSMUSP00000147347 TRANSLATION protein_coding - CCDS52631.1 5 367.0 4.0 0.8 0.7 0.0 0.0 -4,-5 0.2561 4 10.0 MINOR ENSMUSG00000031661 Nkd1 ENSMUST00000169179 ENSMUSP00000125935 TRANSLATION protein_coding - CCDS52631.1 2 367.0 4.0 0.8 0.7 0.0 0.0 -4,-5 0.2561 4 10.0 MINOR ENSMUSG00000031661 Nkd1 ENSMUST00000034086 ENSMUSP00000034086 TRANSLATION protein_coding - CCDS22511.1 1 471.0 4.0 0.8 5.1 0.0 0.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000012705 Retn ENSMUST00000012849 ENSMUSP00000012849 TRANSLATION protein_coding - CCDS22068.1 1 114.0 0.0 2.75 1.2 122.5 0.0 4,-1 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000012705 Retn ENSMUST00000169234 ENSMUSP00000133024 TRANSLATION protein_coding - CCDS22068.1 2 114.0 0.0 2.75 1.2 122.5 0.0 4,-1 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000079019 Insl3 ENSMUST00000034261 ENSMUSP00000034261 TRANSLATION protein_coding - CCDS22404.1 1 122.0 0.0 1.3 1.1 42.4 0.0 2,0 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000031786 Drc7 ENSMUST00000212980 - NO_TRANSLATION retained_intron ENSMUSG00000031786 Drc7 ENSMUST00000212986 - NO_TRANSLATION retained_intron ENSMUSG00000031786 Drc7 ENSMUST00000058479 ENSMUSP00000053972 TRANSLATION protein_coding - CCDS40444.1 1 876.0 0.0 0.0 2.1 0.0 0.0 -4,-5 0.9943 2 1.0 PRINCIPAL:1 ENSMUSG00000111184 Gm49661 ENSMUST00000214133 ENSMUSP00000150387 TRANSLATION protein_coding - - 2 112.0 0.0 0.0 2.2 0.0 0.0 4,-1 0.6704 1 1.0 PRINCIPAL:1 ENSMUSG00000034518 Hmgxb4 ENSMUST00000212372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034518 Hmgxb4 ENSMUST00000145919 ENSMUSP00000133586 TRANSLATION nonsense_mediated_decay - - 1 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034518 Hmgxb4 ENSMUST00000109940 ENSMUSP00000105566 TRANSLATION protein_coding - CCDS85564.1 1 197.0 0.0 2.5 0.0 57.5 0.0 -4,-6 0.1002 2 6.0 MINOR ENSMUSG00000034518 Hmgxb4 ENSMUST00000129391 - NO_TRANSLATION retained_intron ENSMUSG00000034518 Hmgxb4 ENSMUST00000133585 - NO_TRANSLATION retained_intron ENSMUSG00000034518 Hmgxb4 ENSMUST00000211863 ENSMUSP00000148561 TRANSLATION protein_coding stop - 2 53.0 0.0 0.0 0.0 60.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034518 Hmgxb4 ENSMUST00000134126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034518 Hmgxb4 ENSMUST00000151062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034518 Hmgxb4 ENSMUST00000041759 ENSMUSP00000045126 TRANSLATION protein_coding - CCDS22422.1 1 594.0 0.0 2.5 4.9 234.0 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000034656 Cacna1a ENSMUST00000215756 ENSMUSP00000149242 TRANSLATION protein_coding start - 5 2321.0 0.0 20.418 0.0 1067.6 18.0 -4,0 0.4688 29 -2.0 MINOR ENSMUSG00000034656 Cacna1a ENSMUST00000238337 ENSMUSP00000158675 TRANSLATION protein_coding - - - 776.0 0.0 7.565 0.0 312.7 2.0 -4,0 0.0056 11 1.714 MINOR ENSMUSG00000034656 Cacna1a ENSMUST00000121390 ENSMUSP00000112436 TRANSLATION protein_coding - CCDS52618.1 1 2368.0 0.0 20.55 0.1 1067.6 18.0 -4,-5 1.0 31 8.0 PRINCIPAL:2 ENSMUSG00000034656 Cacna1a ENSMUST00000126302 - NO_TRANSLATION retained_intron ENSMUSG00000034656 Cacna1a ENSMUST00000153691 ENSMUSP00000158603 TRANSLATION protein_coding start/stop - 5 183.0 0.0 4.55 0.0 206.8 2.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000034656 Cacna1a ENSMUST00000129620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034656 Cacna1a ENSMUST00000141981 - NO_TRANSLATION retained_intron ENSMUSG00000034656 Cacna1a ENSMUST00000130507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034656 Cacna1a ENSMUST00000143215 - NO_TRANSLATION retained_intron ENSMUSG00000034656 Cacna1a ENSMUST00000122053 ENSMUSP00000114055 TRANSLATION protein_coding - CCDS57628.1 1 2321.0 0.0 20.25 0.0 1040.0 18.0 -4,-5 0.5096 30 7.4 MINOR ENSMUSG00000034656 Cacna1a ENSMUST00000144879 - NO_TRANSLATION retained_intron ENSMUSG00000034656 Cacna1a ENSMUST00000238701 ENSMUSP00000158803 TRANSLATION protein_coding - - - 2457.0 0.0 20.55 0.4 1067.6 18.0 -4,-6 0.4152 31 8.0 ALTERNATIVE:2 ENSMUSG00000034656 Cacna1a ENSMUST00000135382 - NO_TRANSLATION retained_intron ENSMUSG00000031535 Dkk4 ENSMUST00000033936 ENSMUSP00000033936 TRANSLATION protein_coding - CCDS22180.1 1 221.0 0.0 2.8 9.8 80.1 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031634 Ufsp2 ENSMUST00000150943 ENSMUSP00000147305 TRANSLATION protein_coding stop - 2 44.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000031634 Ufsp2 ENSMUST00000151983 - NO_TRANSLATION retained_intron ENSMUSG00000031634 Ufsp2 ENSMUST00000123307 ENSMUSP00000147971 TRANSLATION nonsense_mediated_decay - - 3 117.0 0.0 1.83 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000031634 Ufsp2 ENSMUST00000034051 ENSMUSP00000034051 TRANSLATION protein_coding - CCDS22284.1 1 461.0 0.0 8.33 8.5 182.0 0.0 -4,-6 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000031634 Ufsp2 ENSMUST00000209443 ENSMUSP00000147993 TRANSLATION nonsense_mediated_decay - - 5 211.0 0.0 4.33 0.0 0.0 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000031634 Ufsp2 ENSMUST00000123041 - NO_TRANSLATION retained_intron ENSMUSG00000031634 Ufsp2 ENSMUST00000210081 ENSMUSP00000147651 TRANSLATION nonsense_mediated_decay - - 3 91.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000031634 Ufsp2 ENSMUST00000210608 - NO_TRANSLATION retained_intron ENSMUSG00000031634 Ufsp2 ENSMUST00000130412 ENSMUSP00000148122 TRANSLATION nonsense_mediated_decay - - 2 81.0 0.0 1.83 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000031519 Asb5 ENSMUST00000033918 ENSMUSP00000033918 TRANSLATION protein_coding - CCDS22307.1 1 329.0 0.0 6.25 25.4 146.4 0.0 -4,-7 1.0 2 11.4 PRINCIPAL:4 ENSMUSG00000031519 Asb5 ENSMUST00000239152 ENSMUSP00000159156 TRANSLATION protein_coding - - - 120.0 0.0 2.5 0.0 71.8 0.0 -4,-6 0.0 1 1.428 MINOR ENSMUSG00000031519 Asb5 ENSMUST00000239166 ENSMUSP00000159077 TRANSLATION protein_coding - - - 305.0 0.0 6.382 7.0 146.4 0.0 -4,-5 0.3011 2 8.648 MINOR ENSMUSG00000031519 Asb5 ENSMUST00000209937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031519 Asb5 ENSMUST00000239106 ENSMUSP00000158922 TRANSLATION protein_coding - - - 284.0 0.0 6.55 17.1 146.4 0.0 -4,-5 0.7845 2 10.64 ALTERNATIVE:1 ENSMUSG00000059854 Hydin ENSMUST00000212218 - NO_TRANSLATION retained_intron ENSMUSG00000059854 Hydin ENSMUST00000212034 - NO_TRANSLATION retained_intron ENSMUSG00000059854 Hydin ENSMUST00000043141 ENSMUSP00000046204 TRANSLATION protein_coding - CCDS40476.1 1 5154.0 0.0 7.59 0.0 341.5 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000052456 Get3 ENSMUST00000064314 ENSMUSP00000065337 TRANSLATION protein_coding - CCDS40417.1 1 348.0 24.0 6.5 16.4 418.3 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000052456 Get3 ENSMUST00000209834 ENSMUSP00000147483 TRANSLATION nonsense_mediated_decay start - 3 131.0 10.0 2.0 0.0 117.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000052456 Get3 ENSMUST00000211702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052456 Get3 ENSMUST00000211221 - NO_TRANSLATION retained_intron ENSMUSG00000037134 Prmt9 ENSMUST00000142824 - NO_TRANSLATION retained_intron ENSMUSG00000037134 Prmt9 ENSMUST00000056237 ENSMUSP00000050181 TRANSLATION protein_coding - CCDS40394.1 1 846.0 18.0 8.082 8.6 0.0 0.0 -4,-1 1.0 18 15.0 PRINCIPAL:4 ENSMUSG00000037134 Prmt9 ENSMUST00000210040 ENSMUSP00000148193 TRANSLATION nonsense_mediated_decay - - 1 305.0 16.0 2.3875 0.0 0.0 0.0 -4,-1 0.0309 8 -2.0 MINOR ENSMUSG00000037134 Prmt9 ENSMUST00000156753 - NO_TRANSLATION retained_intron ENSMUSG00000037134 Prmt9 ENSMUST00000118622 ENSMUSP00000112692 TRANSLATION protein_coding - - 5 846.0 18.0 7.912 8.6 0.0 0.0 -4,-1 0.8542 18 14.658 ALTERNATIVE:1 ENSMUSG00000034467 Dynlrb2 ENSMUST00000078170 ENSMUSP00000077301 TRANSLATION protein_coding - CCDS40487.1 1 96.0 0.0 2.08 36.9 96.2 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000034467 Dynlrb2 ENSMUST00000213007 ENSMUSP00000148749 TRANSLATION protein_coding - - 1 85.0 0.0 1.75 0.0 86.2 0.0 -4,-5 0.0441 3 10.422 MINOR ENSMUSG00000031701 Dnaja2 ENSMUST00000211630 - NO_TRANSLATION retained_intron ENSMUSG00000031701 Dnaja2 ENSMUST00000034138 ENSMUSP00000034138 TRANSLATION protein_coding - CCDS22500.1 1 412.0 8.0 6.09 31.2 301.5 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000069895 Atxn1l ENSMUST00000212894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069895 Atxn1l ENSMUST00000093162 ENSMUSP00000090850 TRANSLATION protein_coding - CCDS40474.1 2 687.0 0.0 0.2 11.0 143.3 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000069895 Atxn1l ENSMUST00000212726 ENSMUSP00000148453 TRANSLATION protein_coding stop - 2 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000069895 Atxn1l ENSMUST00000212605 ENSMUSP00000148324 TRANSLATION protein_coding - CCDS40474.1 1 687.0 0.0 0.2 11.0 143.3 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000010936 Vac14 ENSMUST00000212663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010936 Vac14 ENSMUST00000212829 ENSMUSP00000148548 TRANSLATION nonsense_mediated_decay - - 5 461.0 0.0 0.0 0.0 137.0 0.0 -4,-5 0.0012 12 -2.0 MINOR ENSMUSG00000010936 Vac14 ENSMUST00000212766 - NO_TRANSLATION retained_intron ENSMUSG00000010936 Vac14 ENSMUST00000213003 ENSMUSP00000148440 TRANSLATION nonsense_mediated_decay - - 1 142.0 0.0 0.0 0.0 102.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000010936 Vac14 ENSMUST00000213015 - NO_TRANSLATION retained_intron ENSMUSG00000010936 Vac14 ENSMUST00000034190 ENSMUSP00000034190 TRANSLATION protein_coding - CCDS22663.1 1 782.0 0.0 0.0 14.5 399.8 0.0 -4,-5 1.0 18 10.0 PRINCIPAL:1 ENSMUSG00000031447 Lamp1 ENSMUST00000209709 - NO_TRANSLATION retained_intron ENSMUSG00000031447 Lamp1 ENSMUST00000033824 ENSMUSP00000033824 TRANSLATION protein_coding - CCDS22106.1 1 406.0 0.0 6.05 4.7 384.2 0.0 4,-1 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000012889 Podnl1 ENSMUST00000147175 - NO_TRANSLATION retained_intron ENSMUSG00000012889 Podnl1 ENSMUST00000093380 ENSMUSP00000091073 TRANSLATION protein_coding - CCDS52615.1 1 559.0 0.0 8.55 0.0 187.2 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036442 Thap11 ENSMUST00000040445 ENSMUSP00000048994 TRANSLATION protein_coding - CCDS22616.1 - 305.0 5.0 0.5 8.4 44.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000049008 BB014433 ENSMUST00000123331 ENSMUSP00000116138 TRANSLATION protein_coding stop - 2 116.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0286 - -2.0 MINOR ENSMUSG00000049008 BB014433 ENSMUST00000050493 ENSMUSP00000053487 TRANSLATION protein_coding - - 1 389.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5942 4 0.0 PRINCIPAL:1 ENSMUSG00000049008 BB014433 ENSMUST00000179941 ENSMUSP00000137001 TRANSLATION protein_coding - - - 389.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5942 4 0.0 PRINCIPAL:1 ENSMUSG00000074449 Potefam3a ENSMUST00000084046 ENSMUSP00000081059 TRANSLATION protein_coding - CCDS52499.1 1 350.0 0.0 3.732 0.0 92.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036564 Ndrg4 ENSMUST00000080666 ENSMUSP00000079495 TRANSLATION protein_coding - CCDS22565.1 1 339.0 0.0 8.75 20.9 413.0 0.0 -4,-5 0.9348 7 11.202 ALTERNATIVE:1 ENSMUSG00000036564 Ndrg4 ENSMUST00000166358 ENSMUSP00000131203 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0019 1 -2.0 MINOR ENSMUSG00000036564 Ndrg4 ENSMUST00000162578 ENSMUSP00000148590 TRANSLATION protein_coding start - 2 109.0 0.0 1.9 0.0 34.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000036564 Ndrg4 ENSMUST00000161314 - NO_TRANSLATION retained_intron ENSMUSG00000036564 Ndrg4 ENSMUST00000159632 - NO_TRANSLATION retained_intron ENSMUSG00000036564 Ndrg4 ENSMUST00000041318 ENSMUSP00000036226 TRANSLATION protein_coding - - 1 404.0 0.0 9.15 17.9 412.1 0.0 0,-3 0.7651 9 11.396 PRINCIPAL:3 ENSMUSG00000036564 Ndrg4 ENSMUST00000212160 ENSMUSP00000148779 TRANSLATION protein_coding stop - 5 197.0 0.0 6.0 0.0 253.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000036564 Ndrg4 ENSMUST00000159851 - NO_TRANSLATION retained_intron ENSMUSG00000036564 Ndrg4 ENSMUST00000073139 ENSMUSP00000072883 TRANSLATION protein_coding - CCDS57634.1 1 352.0 0.0 9.15 19.0 412.1 0.0 -4,-5 1.0 8 11.62 ALTERNATIVE:1 ENSMUSG00000036564 Ndrg4 ENSMUST00000160964 ENSMUSP00000125703 TRANSLATION protein_coding stop - 5 224.0 0.0 5.75 0.0 276.4 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000036564 Ndrg4 ENSMUST00000160915 ENSMUSP00000148614 TRANSLATION nonsense_mediated_decay start - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000031465 Angpt2 ENSMUST00000033846 ENSMUSP00000033846 TRANSLATION protein_coding - CCDS22125.1 1 496.0 9.0 5.6 13.6 234.3 0.0 2,-3 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000031465 Angpt2 ENSMUST00000170200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079120 AY761185 ENSMUST00000110758 ENSMUSP00000106386 TRANSLATION protein_coding - CCDS40263.1 1 94.0 4.0 0.0 0.0 76.1 0.0 4,-1 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000096295 Defa2 ENSMUST00000170275 ENSMUSP00000125888 TRANSLATION protein_coding - CCDS59740.1 1 95.0 0.0 1.0 0.0 78.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033594 Spata2l ENSMUST00000211845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033594 Spata2l ENSMUST00000098327 ENSMUSP00000095932 TRANSLATION protein_coding - CCDS22752.1 1 426.0 0.0 0.33 3.8 0.0 0.0 -4,-6 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000033594 Spata2l ENSMUST00000166768 ENSMUSP00000130306 TRANSLATION protein_coding - CCDS22752.1 1 426.0 0.0 0.33 3.8 0.0 0.0 -4,-6 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000033594 Spata2l ENSMUST00000212818 ENSMUSP00000148755 TRANSLATION protein_coding stop - 3 89.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0093 2 -2.0 MINOR ENSMUSG00000031486 Adgra2 ENSMUST00000033876 ENSMUSP00000033876 TRANSLATION protein_coding - CCDS22210.2 1 1336.0 0.0 3.1675 2.3 124.0 6.0 4,-1 1.0 7 7.248 PRINCIPAL:2 ENSMUSG00000031486 Adgra2 ENSMUST00000179207 ENSMUSP00000137181 TRANSLATION nonsense_mediated_decay start - 5 210.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000031486 Adgra2 ENSMUST00000178514 ENSMUSP00000136277 TRANSLATION protein_coding - - 5 1121.0 0.0 4.0425 0.0 94.5 6.0 4,-1 0.1095 7 7.0 ALTERNATIVE:2 ENSMUSG00000031486 Adgra2 ENSMUST00000179351 ENSMUSP00000137457 TRANSLATION protein_coding start - 3 176.0 0.0 0.25 0.0 29.5 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031563 Wwc2 ENSMUST00000212282 - NO_TRANSLATION retained_intron ENSMUSG00000031563 Wwc2 ENSMUST00000057561 ENSMUSP00000056121 TRANSLATION protein_coding - CCDS22301.1 1 1187.0 0.0 4.8 1.2 39.5 0.0 -4,-7 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000031907 Zfp90 ENSMUST00000212874 ENSMUSP00000148744 TRANSLATION protein_coding - CCDS22635.1 1 636.0 52.0 2.44 8.3 339.2 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000031907 Zfp90 ENSMUST00000212866 - NO_TRANSLATION retained_intron ENSMUSG00000031907 Zfp90 ENSMUST00000034382 ENSMUSP00000034382 TRANSLATION protein_coding - CCDS22635.1 1 636.0 52.0 2.44 8.3 339.2 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000031907 Zfp90 ENSMUST00000212606 ENSMUSP00000148457 TRANSLATION protein_coding - - 1 103.0 0.0 1.8 0.0 91.4 0.0 -4,-5 0.0 1 4.428 MINOR ENSMUSG00000031907 Zfp90 ENSMUST00000211958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031907 Zfp90 ENSMUST00000213045 ENSMUSP00000148833 TRANSLATION nonsense_mediated_decay - - 1 60.0 0.0 1.198 0.0 91.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000110641 Gm45826 ENSMUST00000212965 ENSMUSP00000148505 TRANSLATION nonsense_mediated_decay,RT start - 1 28.0 3.0 0.0 0.0 0.0 0.0 -3,-5 0.0016 - -2.0 ALTERNATIVE:2 ENSMUSG00000110641 Gm45826 ENSMUST00000212226 ENSMUSP00000148411 TRANSLATION protein_coding,RT - - 1 71.0 0.0 1.0 0.0 62.0 0.0 1,-3 0.8281 - -2.0 PRINCIPAL:5 ENSMUSG00000004996 Mri1 ENSMUST00000140850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004996 Mri1 ENSMUST00000005122 ENSMUSP00000005122 TRANSLATION nonsense_mediated_decay start - 5 158.0 4.0 2.0 0.0 41.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000004996 Mri1 ENSMUST00000126435 ENSMUSP00000122623 TRANSLATION protein_coding - CCDS22473.1 1 369.0 15.0 5.75 2.2 266.1 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000004996 Mri1 ENSMUST00000125498 ENSMUSP00000117115 TRANSLATION protein_coding start/stop - 3 228.0 10.0 3.75 0.0 176.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000004996 Mri1 ENSMUST00000127747 - NO_TRANSLATION retained_intron ENSMUSG00000037725 Ckap2 ENSMUST00000211045 - NO_TRANSLATION retained_intron ENSMUSG00000037725 Ckap2 ENSMUST00000046916 ENSMUSP00000039518 TRANSLATION protein_coding - CCDS22170.1 1 664.0 0.0 0.0 0.0 548.4 0.0 -4,0 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000037725 Ckap2 ENSMUST00000211629 - NO_TRANSLATION retained_intron ENSMUSG00000031672 Got2 ENSMUST00000212861 - NO_TRANSLATION retained_intron ENSMUSG00000031672 Got2 ENSMUST00000147040 - NO_TRANSLATION retained_intron ENSMUSG00000031672 Got2 ENSMUST00000034097 ENSMUSP00000034097 TRANSLATION protein_coding - CCDS22568.1 1 430.0 15.0 8.75 26.6 321.5 0.0 0,3 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000031672 Got2 ENSMUST00000211836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069920 B3gnt9 ENSMUST00000161745 ENSMUSP00000125145 TRANSLATION protein_coding stop - 2 144.0 0.0 0.2 0.0 0.0 0.0 0,-4 0.0 1 -2.0 MINOR ENSMUSG00000069920 B3gnt9 ENSMUST00000136822 ENSMUSP00000130840 TRANSLATION protein_coding - CCDS40455.1 - 399.0 0.0 1.2 3.3 132.1 0.0 0,-4 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000069920 B3gnt9 ENSMUST00000093217 ENSMUSP00000133023 TRANSLATION protein_coding - CCDS40455.1 2 399.0 0.0 1.2 3.3 132.1 0.0 0,-4 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000043664 Tmem221 ENSMUST00000052072 ENSMUSP00000058317 TRANSLATION protein_coding - CCDS52586.1 1 230.0 0.0 0.0 3.5 158.4 0.0 0,-3 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000061410 Zcchc14 ENSMUST00000139379 - NO_TRANSLATION retained_intron ENSMUSG00000061410 Zcchc14 ENSMUST00000134212 - NO_TRANSLATION retained_intron ENSMUSG00000061410 Zcchc14 ENSMUST00000154725 ENSMUSP00000120570 TRANSLATION protein_coding start - 1 242.0 4.0 0.0 0.0 29.3 0.0 -4,-2 0.049 - -2.0 MINOR ENSMUSG00000061410 Zcchc14 ENSMUST00000046386 ENSMUSP00000040360 TRANSLATION protein_coding - - 1 1093.0 4.0 0.88 2.1 29.3 0.0 -4,-7 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000031508 Ankrd10 ENSMUST00000211389 - NO_TRANSLATION retained_intron ENSMUSG00000031508 Ankrd10 ENSMUST00000211445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031508 Ankrd10 ENSMUST00000211174 ENSMUSP00000147295 TRANSLATION nonsense_mediated_decay - - 1 174.0 0.0 3.2285 0.0 65.6 0.0 -4,-5 0.0018 3 -2.0 MINOR ENSMUSG00000031508 Ankrd10 ENSMUST00000209915 ENSMUSP00000147518 TRANSLATION nonsense_mediated_decay - - 3 101.0 0.0 2.2285 0.0 42.8 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000031508 Ankrd10 ENSMUST00000210530 ENSMUSP00000147908 TRANSLATION nonsense_mediated_decay - - 1 166.0 0.0 3.28 0.0 66.6 0.0 -4,-5 0.0022 3 -2.0 MINOR ENSMUSG00000031508 Ankrd10 ENSMUST00000033905 ENSMUSP00000033905 TRANSLATION protein_coding - CCDS22098.1 1 415.0 0.0 4.08 8.0 73.4 0.0 -4,-5 1.0 6 14.748 PRINCIPAL:1 ENSMUSG00000031508 Ankrd10 ENSMUST00000211690 - NO_TRANSLATION retained_intron ENSMUSG00000031508 Ankrd10 ENSMUST00000169782 ENSMUSP00000131657 TRANSLATION protein_coding - CCDS52479.1 1 315.0 0.0 4.18 0.0 74.1 0.0 -4,-5 0.1599 5 12.0 MINOR ENSMUSG00000031508 Ankrd10 ENSMUST00000210876 ENSMUSP00000147649 TRANSLATION protein_coding stop - 5 52.0 0.0 1.0 0.0 23.7 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000036779 Tent4b ENSMUST00000066748 ENSMUSP00000067971 TRANSLATION protein_coding - CCDS52630.1 1 637.0 11.0 6.5 0.0 109.8 0.0 -4,-6 0.0595 10 12.606 MINOR ENSMUSG00000036779 Tent4b ENSMUST00000125043 - NO_TRANSLATION retained_intron ENSMUSG00000036779 Tent4b ENSMUST00000118952 ENSMUSP00000112608 TRANSLATION protein_coding - CCDS52629.1 1 680.0 16.0 7.5 0.4 110.8 0.0 -4,-6 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000036779 Tent4b ENSMUST00000119033 ENSMUSP00000112766 TRANSLATION protein_coding - CCDS52629.1 1 680.0 16.0 7.5 0.4 110.8 0.0 -4,-6 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000036779 Tent4b ENSMUST00000154115 ENSMUSP00000120503 TRANSLATION protein_coding start - 3 200.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000060038 Dhps ENSMUST00000132766 - NO_TRANSLATION retained_intron ENSMUSG00000060038 Dhps ENSMUST00000154575 - NO_TRANSLATION retained_intron ENSMUSG00000060038 Dhps ENSMUST00000129826 - NO_TRANSLATION retained_intron ENSMUSG00000060038 Dhps ENSMUST00000132356 - NO_TRANSLATION retained_intron ENSMUSG00000060038 Dhps ENSMUST00000142210 - NO_TRANSLATION retained_intron ENSMUSG00000060038 Dhps ENSMUST00000152871 ENSMUSP00000120308 TRANSLATION nonsense_mediated_decay start - 1 149.0 5.0 2.0 0.0 61.6 0.0 -3,-1 0.0003 5 -2.0 MINOR ENSMUSG00000060038 Dhps ENSMUST00000078665 ENSMUSP00000077733 TRANSLATION protein_coding - CCDS22492.1 1 369.0 24.0 8.83 10.3 437.1 0.0 -1,-3 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000060038 Dhps ENSMUST00000142422 - NO_TRANSLATION retained_intron ENSMUSG00000049717 Lig4 ENSMUST00000095476 ENSMUSP00000093130 TRANSLATION protein_coding - CCDS22092.1 1 911.0 15.0 1.0 11.0 507.2 0.0 -4,-6 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000049717 Lig4 ENSMUST00000170033 ENSMUSP00000130807 TRANSLATION protein_coding - CCDS22092.1 1 911.0 15.0 1.0 11.0 507.2 0.0 -4,-6 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000045128 Rpl18a ENSMUST00000212494 ENSMUSP00000148665 TRANSLATION protein_coding - - 5 109.0 0.0 3.528 0.0 149.5 0.0 -4,-7 0.0004 6 5.448 MINOR ENSMUSG00000045128 Rpl18a ENSMUST00000054220 ENSMUSP00000058368 TRANSLATION protein_coding - CCDS22386.1 1 176.0 0.0 5.608 33.0 189.4 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000045128 Rpl18a ENSMUST00000212019 - NO_TRANSLATION retained_intron ENSMUSG00000045128 Rpl18a ENSMUST00000212709 ENSMUSP00000148529 TRANSLATION protein_coding - - 2 147.0 0.0 4.66 2.1 161.6 0.0 -4,-2 0.0361 8 8.572 MINOR ENSMUSG00000045128 Rpl18a ENSMUST00000213053 ENSMUSP00000148281 TRANSLATION nonsense_mediated_decay - - 3 59.0 3.0 0.198 0.0 0.0 0.0 -4,-1 0.0009 - -2.0 MINOR ENSMUSG00000045128 Rpl18a ENSMUST00000212129 ENSMUSP00000148723 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 2.198 0.0 71.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000045128 Rpl18a ENSMUST00000212378 ENSMUSP00000148743 TRANSLATION protein_coding stop - 3 123.0 0.0 3.778 0.0 129.6 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000045128 Rpl18a ENSMUST00000212796 ENSMUSP00000148671 TRANSLATION protein_coding stop - 2 219.0 0.0 4.528 0.0 189.4 0.0 -4,-7 0.0059 9 -2.0 MINOR ENSMUSG00000044014 Npy5r ENSMUST00000070810 ENSMUSP00000065157 TRANSLATION protein_coding - CCDS22335.1 1 466.0 0.0 0.2 0.3 160.8 7.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000044014 Npy5r ENSMUST00000212563 ENSMUSP00000148589 TRANSLATION protein_coding - CCDS22335.1 1 466.0 0.0 0.2 0.3 160.8 7.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000044014 Npy5r ENSMUST00000211920 ENSMUSP00000148410 TRANSLATION protein_coding - CCDS22335.1 5 466.0 0.0 0.2 0.3 160.8 7.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000031443 F7 ENSMUST00000033820 ENSMUSP00000033820 TRANSLATION protein_coding - CCDS22104.1 1 446.0 11.0 5.53 1.0 344.7 0.0 3,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000006587 Snai3 ENSMUST00000006762 ENSMUSP00000006762 TRANSLATION protein_coding - CCDS22739.1 1 287.0 19.0 1.5 8.5 92.4 0.0 -4,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000034424 Gcsh ENSMUST00000162548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034424 Gcsh ENSMUST00000040484 ENSMUSP00000037131 TRANSLATION protein_coding - CCDS22696.1 1 170.0 5.0 3.5 8.7 168.2 0.0 -4,0 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000006570 Defb2 ENSMUST00000006745 ENSMUSP00000006745 TRANSLATION protein_coding - CCDS40284.1 1 71.0 0.0 1.0 0.1 42.0 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036879 Phkb ENSMUST00000053771 ENSMUSP00000050788 TRANSLATION protein_coding - CCDS22501.1 1 1085.0 0.0 9.943 21.7 364.1 0.0 -4,-6 1.0 24 16.0 PRINCIPAL:1 ENSMUSG00000036879 Phkb ENSMUST00000162305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036879 Phkb ENSMUST00000160611 ENSMUSP00000125690 TRANSLATION nonsense_mediated_decay - - 1 169.0 0.0 3.066 0.0 82.9 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000036879 Phkb ENSMUST00000159716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036879 Phkb ENSMUST00000161850 ENSMUSP00000124939 TRANSLATION protein_coding stop - 5 206.0 0.0 4.08 0.0 128.8 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000036879 Phkb ENSMUST00000162464 ENSMUSP00000125197 TRANSLATION protein_coding stop - 3 163.0 0.0 3.0 0.0 81.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000036879 Phkb ENSMUST00000162981 ENSMUSP00000124522 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000036879 Phkb ENSMUST00000160731 ENSMUSP00000125051 TRANSLATION protein_coding start - 1 314.0 0.0 0.0 0.0 73.6 0.0 -4,-6 0.0011 7 -2.0 MINOR ENSMUSG00000036879 Phkb ENSMUST00000159882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054823 Nsd3 ENSMUST00000139966 ENSMUSP00000122096 TRANSLATION protein_coding - - 5 1397.0 40.0 12.23 0.1 222.7 0.0 -4,-5 1.0 18 14.0 PRINCIPAL:2 ENSMUSG00000054823 Nsd3 ENSMUST00000153597 ENSMUSP00000123028 TRANSLATION protein_coding - - 1 484.0 26.0 8.75 0.0 143.1 0.0 -4,-5 0.0017 3 2.0 MINOR ENSMUSG00000054823 Nsd3 ENSMUST00000136107 ENSMUSP00000147840 TRANSLATION protein_coding - CCDS85518.1 1 621.0 0.0 2.4 0.0 77.8 0.0 -4,-5 0.0122 12 0.0 MINOR ENSMUSG00000054823 Nsd3 ENSMUST00000146919 ENSMUSP00000115470 TRANSLATION protein_coding - CCDS40305.1 1 655.0 0.0 2.4 0.1 77.8 0.0 -4,-5 0.0292 15 0.0 MINOR ENSMUSG00000054823 Nsd3 ENSMUST00000143445 ENSMUSP00000147926 TRANSLATION protein_coding - - 1 542.0 0.0 2.4 0.0 77.8 0.0 -4,-5 0.0 11 0.0 MINOR ENSMUSG00000054823 Nsd3 ENSMUST00000141781 - NO_TRANSLATION retained_intron ENSMUSG00000054823 Nsd3 ENSMUST00000142395 ENSMUSP00000117778 TRANSLATION protein_coding - CCDS52528.1 5 1446.0 40.0 12.23 0.1 222.7 0.0 -4,-5 0.6166 18 14.0 ALTERNATIVE:2 ENSMUSG00000054823 Nsd3 ENSMUST00000147935 - NO_TRANSLATION retained_intron ENSMUSG00000054823 Nsd3 ENSMUST00000155861 ENSMUSP00000117596 TRANSLATION protein_coding - CCDS40305.1 1 655.0 0.0 2.4 0.1 77.8 0.0 -4,-5 0.0292 15 0.0 MINOR ENSMUSG00000054823 Nsd3 ENSMUST00000129959 - NO_TRANSLATION retained_intron ENSMUSG00000054191 Klf1 ENSMUST00000067060 ENSMUSP00000064366 TRANSLATION protein_coding - - 1 358.0 12.0 1.0 1.4 176.7 0.0 -4,-6 0.8011 - 15.0 PRINCIPAL:2 ENSMUSG00000054191 Klf1 ENSMUST00000239392 ENSMUSP00000159324 TRANSLATION protein_coding - CCDS22483.1 - 376.0 12.0 1.0 0.1 176.7 0.0 -4,-7 0.4093 - 14.0 ALTERNATIVE:2 ENSMUSG00000058019 Ces5a ENSMUST00000212722 ENSMUSP00000148373 TRANSLATION protein_coding stop - 3 263.0 4.0 4.75 0.0 320.4 0.0 2,-2 0.0021 2 -2.0 MINOR ENSMUSG00000058019 Ces5a ENSMUST00000212407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058019 Ces5a ENSMUST00000212690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058019 Ces5a ENSMUST00000080391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058019 Ces5a ENSMUST00000212009 ENSMUSP00000148481 TRANSLATION protein_coding - CCDS85584.1 1 575.0 6.0 11.58 1.0 506.0 0.0 -1,-4 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000031760 Mt3 ENSMUST00000034211 ENSMUSP00000034211 TRANSLATION protein_coding - CCDS40436.1 1 68.0 7.0 1.915 14.5 75.6 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000031760 Mt3 ENSMUST00000211915 ENSMUSP00000148383 TRANSLATION protein_coding - - 3 43.0 7.0 0.915 0.0 39.3 0.0 -4,-5 0.0005 - 11.988 MINOR ENSMUSG00000031760 Mt3 ENSMUST00000211930 ENSMUSP00000148345 TRANSLATION protein_coding - - 2 80.0 7.0 0.915 0.0 41.5 0.0 -4,-5 0.0005 - 12.162 MINOR ENSMUSG00000031576 Kcnu1 ENSMUST00000126226 ENSMUSP00000123273 TRANSLATION protein_coding stop - 3 160.0 0.0 1.675 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031576 Kcnu1 ENSMUST00000120653 ENSMUSP00000113442 TRANSLATION protein_coding - - 1 381.0 0.0 3.965 0.0 0.0 0.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000031576 Kcnu1 ENSMUST00000210273 - NO_TRANSLATION retained_intron ENSMUSG00000031576 Kcnu1 ENSMUST00000098858 ENSMUSP00000096457 TRANSLATION protein_coding - CCDS52530.1 1 1121.0 0.0 18.205 0.0 171.9 0.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000031875 Cmtm3 ENSMUST00000212139 ENSMUSP00000148338 TRANSLATION protein_coding stop - 5 118.0 0.0 0.2 0.0 0.0 3.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000031875 Cmtm3 ENSMUST00000212734 - NO_TRANSLATION retained_intron ENSMUSG00000031875 Cmtm3 ENSMUST00000212948 ENSMUSP00000148628 TRANSLATION protein_coding stop - 3 142.0 0.0 0.864 0.0 34.3 4.0 -4,-5 0.014 - -2.0 MINOR ENSMUSG00000031875 Cmtm3 ENSMUST00000211885 ENSMUSP00000148513 TRANSLATION protein_coding stop - 3 82.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0021 - -2.0 MINOR ENSMUSG00000031875 Cmtm3 ENSMUST00000034343 ENSMUSP00000034343 TRANSLATION protein_coding - CCDS22577.1 1 184.0 0.0 0.93 2.4 39.4 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031875 Cmtm3 ENSMUST00000211996 - NO_TRANSLATION retained_intron ENSMUSG00000031875 Cmtm3 ENSMUST00000212081 ENSMUSP00000148682 TRANSLATION protein_coding - CCDS22577.1 5 184.0 0.0 0.93 2.4 39.4 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031875 Cmtm3 ENSMUST00000212399 - NO_TRANSLATION retained_intron ENSMUSG00000014778 Fhod1 ENSMUST00000014922 ENSMUSP00000014922 TRANSLATION protein_coding - CCDS22600.1 1 1197.0 0.0 10.76 0.0 284.4 0.0 -4,-5 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000014778 Fhod1 ENSMUST00000132777 - NO_TRANSLATION retained_intron ENSMUSG00000014778 Fhod1 ENSMUST00000136439 - NO_TRANSLATION retained_intron ENSMUSG00000014778 Fhod1 ENSMUST00000134837 - NO_TRANSLATION retained_intron ENSMUSG00000031904 Slc7a6 ENSMUST00000212837 - NO_TRANSLATION retained_intron ENSMUSG00000031904 Slc7a6 ENSMUST00000213020 - NO_TRANSLATION retained_intron ENSMUSG00000031904 Slc7a6 ENSMUST00000211824 ENSMUSP00000148620 TRANSLATION protein_coding stop - 5 232.0 0.0 4.33 0.0 41.1 5.0 -4,-5 0.0029 1 -2.0 MINOR ENSMUSG00000031904 Slc7a6 ENSMUST00000034378 ENSMUSP00000034378 TRANSLATION protein_coding - CCDS22631.1 1 515.0 0.0 11.58 7.6 88.5 12.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000031904 Slc7a6 ENSMUST00000212377 ENSMUSP00000148693 TRANSLATION nonsense_mediated_decay - - 1 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031904 Slc7a6 ENSMUST00000212802 ENSMUSP00000148794 TRANSLATION protein_coding stop - 3 174.0 0.0 2.5 0.0 0.0 3.0 -4,-5 0.0002 1 -2.0 MINOR ENSMUSG00000031904 Slc7a6 ENSMUST00000212421 ENSMUSP00000148353 TRANSLATION protein_coding stop - 2 79.0 0.0 2.58 0.0 29.8 2.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031710 Ucp1 ENSMUST00000034146 ENSMUSP00000034146 TRANSLATION protein_coding - CCDS22449.1 1 307.0 0.0 5.3 25.7 186.1 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000031480 Thsd1 ENSMUST00000162447 ENSMUSP00000148214 TRANSLATION protein_coding - CCDS85512.1 1 790.0 0.0 0.64 0.0 38.0 1.0 -4,-5 0.2981 2 12.0 MINOR ENSMUSG00000031480 Thsd1 ENSMUST00000069828 ENSMUSP00000067701 TRANSLATION protein_coding - CCDS22172.1 1 851.0 0.0 0.64 9.2 38.0 1.0 0,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000031480 Thsd1 ENSMUST00000160585 ENSMUSP00000125118 TRANSLATION protein_coding - CCDS80862.1 5 798.0 0.0 0.0 6.2 0.0 1.0 0,-3 0.5184 2 1.902 MINOR ENSMUSG00000049946 BC030500 ENSMUST00000062978 ENSMUSP00000131717 TRANSLATION protein_coding - CCDS40345.1 1 123.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.8803 - 0.0 PRINCIPAL:1 ENSMUSG00000049946 BC030500 ENSMUST00000160055 ENSMUSP00000130369 TRANSLATION protein_coding stop - 5 185.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0208 - -2.0 MINOR ENSMUSG00000031552 Adam18 ENSMUST00000173833 ENSMUSP00000133378 TRANSLATION nonsense_mediated_decay - - 1 634.0 12.0 5.47 0.0 425.8 0.0 2,-2 0.1297 4 -2.0 MINOR ENSMUSG00000031552 Adam18 ENSMUST00000033957 ENSMUSP00000033957 TRANSLATION protein_coding - CCDS22195.1 1 719.0 12.0 6.23 0.4 425.8 0.0 2,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000031552 Adam18 ENSMUST00000138232 ENSMUSP00000148259 TRANSLATION protein_coding start - 3 66.0 0.0 0.4 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000031828 Klhl36 ENSMUST00000212636 - NO_TRANSLATION retained_intron ENSMUSG00000031828 Klhl36 ENSMUST00000034287 ENSMUSP00000034287 TRANSLATION protein_coding - CCDS22713.1 1 613.0 0.0 3.15 12.5 294.1 0.0 -4,-7 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000031828 Klhl36 ENSMUST00000212970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033862 Cdk10 ENSMUST00000212497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033862 Cdk10 ENSMUST00000212193 ENSMUSP00000148661 TRANSLATION nonsense_mediated_decay - - 2 140.0 14.0 3.128 0.0 69.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033862 Cdk10 ENSMUST00000036880 ENSMUSP00000045527 TRANSLATION protein_coding - CCDS22751.1 1 360.0 18.0 7.778 10.7 224.8 0.0 -4,-5 1.0 4 19.848 PRINCIPAL:1 ENSMUSG00000033862 Cdk10 ENSMUST00000212904 - NO_TRANSLATION retained_intron ENSMUSG00000033862 Cdk10 ENSMUST00000212532 - NO_TRANSLATION retained_intron ENSMUSG00000033862 Cdk10 ENSMUST00000212784 - NO_TRANSLATION retained_intron ENSMUSG00000033862 Cdk10 ENSMUST00000212361 ENSMUSP00000148436 TRANSLATION nonsense_mediated_decay - - 1 129.0 8.0 1.58 0.0 29.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033862 Cdk10 ENSMUST00000212035 - NO_TRANSLATION retained_intron ENSMUSG00000033862 Cdk10 ENSMUST00000212028 ENSMUSP00000148549 TRANSLATION nonsense_mediated_decay start - 5 115.0 8.0 1.83 0.0 30.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033862 Cdk10 ENSMUST00000212021 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033862 Cdk10 ENSMUST00000213005 ENSMUSP00000148435 TRANSLATION protein_coding - CCDS85629.1 1 289.0 10.0 6.528 22.0 184.5 0.0 -4,-5 0.6901 3 11.746 MINOR ENSMUSG00000033862 Cdk10 ENSMUST00000212749 - NO_TRANSLATION retained_intron ENSMUSG00000061561 Or2z9 ENSMUST00000215198 ENSMUSP00000149452 TRANSLATION protein_coding - CCDS52593.1 5 314.0 0.0 1.0 7.1 189.7 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061561 Or2z9 ENSMUST00000213940 ENSMUSP00000149853 TRANSLATION protein_coding - CCDS52593.1 5 314.0 0.0 1.0 7.1 189.7 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061561 Or2z9 ENSMUST00000074540 ENSMUSP00000074128 TRANSLATION protein_coding - CCDS52593.1 - 314.0 0.0 1.0 7.1 189.7 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000013160 Atp6v0d1 ENSMUST00000144486 - NO_TRANSLATION retained_intron ENSMUSG00000013160 Atp6v0d1 ENSMUST00000013304 ENSMUSP00000013304 TRANSLATION protein_coding - CCDS22604.1 1 351.0 0.0 7.25 33.8 386.1 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000004567 Mcoln1 ENSMUST00000162797 - NO_TRANSLATION retained_intron ENSMUSG00000004567 Mcoln1 ENSMUST00000161842 ENSMUSP00000146598 TRANSLATION protein_coding start - 1 115.0 0.0 1.882 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000004567 Mcoln1 ENSMUST00000208943 ENSMUSP00000146452 TRANSLATION protein_coding start - 5 94.0 0.0 2.212 0.0 0.0 2.0 -4,-6 0.0002 - -2.0 MINOR ENSMUSG00000004567 Mcoln1 ENSMUST00000159808 - NO_TRANSLATION retained_intron ENSMUSG00000004567 Mcoln1 ENSMUST00000208739 - NO_TRANSLATION retained_intron ENSMUSG00000004567 Mcoln1 ENSMUST00000161705 - NO_TRANSLATION retained_intron ENSMUSG00000004567 Mcoln1 ENSMUST00000160338 ENSMUSP00000123717 TRANSLATION protein_coding stop - 5 90.0 0.0 1.0 0.0 0.0 1.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000004567 Mcoln1 ENSMUST00000159538 - NO_TRANSLATION retained_intron ENSMUSG00000004567 Mcoln1 ENSMUST00000004683 ENSMUSP00000004683 TRANSLATION protein_coding - CCDS22063.1 1 580.0 0.0 10.962 11.0 38.2 7.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000004567 Mcoln1 ENSMUST00000208306 ENSMUSP00000146575 TRANSLATION protein_coding stop - 2 124.0 0.0 2.33 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000004567 Mcoln1 ENSMUST00000208359 ENSMUSP00000146727 TRANSLATION protein_coding start - 5 130.0 0.0 2.08 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000031756 Cenpn ENSMUST00000212775 ENSMUSP00000148610 TRANSLATION protein_coding - - 3 136.0 0.0 2.585 0.0 68.3 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000031756 Cenpn ENSMUST00000034205 ENSMUSP00000034205 TRANSLATION protein_coding - CCDS22693.1 1 337.0 0.0 4.585 9.6 263.1 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000031756 Cenpn ENSMUST00000212263 ENSMUSP00000148413 TRANSLATION protein_coding - - 1 250.0 0.0 2.75 0.0 205.6 0.0 -4,-5 0.0 3 4.878 MINOR ENSMUSG00000031756 Cenpn ENSMUST00000212578 - NO_TRANSLATION retained_intron ENSMUSG00000031756 Cenpn ENSMUST00000212184 - NO_TRANSLATION retained_intron ENSMUSG00000094500 Smim18 ENSMUST00000179364 ENSMUSP00000136891 TRANSLATION protein_coding - CCDS57615.1 1 93.0 0.0 0.6 15.2 70.3 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036534 Slc38a7 ENSMUST00000212628 ENSMUSP00000148545 TRANSLATION protein_coding stop - 5 409.0 0.0 2.87 0.0 184.3 11.0 -4,-5 0.0083 3 -2.0 MINOR ENSMUSG00000036534 Slc38a7 ENSMUST00000153835 - NO_TRANSLATION retained_intron ENSMUSG00000036534 Slc38a7 ENSMUST00000040481 ENSMUSP00000037023 TRANSLATION protein_coding - CCDS22567.1 1 463.0 0.0 3.47 12.7 193.2 12.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000036534 Slc38a7 ENSMUST00000212270 ENSMUSP00000148659 TRANSLATION protein_coding - CCDS22567.1 1 463.0 0.0 3.47 12.7 193.2 12.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000036534 Slc38a7 ENSMUST00000142881 - NO_TRANSLATION retained_intron ENSMUSG00000014444 Piezo1 ENSMUST00000152596 - NO_TRANSLATION retained_intron ENSMUSG00000014444 Piezo1 ENSMUST00000128383 ENSMUSP00000116194 TRANSLATION nonsense_mediated_decay start - 5 1003.0 0.0 14.098 0.0 227.3 23.0 0,-3 0.0129 4 -2.0 MINOR ENSMUSG00000014444 Piezo1 ENSMUST00000134304 - NO_TRANSLATION retained_intron ENSMUSG00000014444 Piezo1 ENSMUST00000067252 ENSMUSP00000089777 TRANSLATION protein_coding - CCDS52695.1 5 2546.0 0.0 23.778 0.0 838.2 25.0 -2,-5 1.0 11 8.0 PRINCIPAL:2 ENSMUSG00000014444 Piezo1 ENSMUST00000126553 - NO_TRANSLATION retained_intron ENSMUSG00000014444 Piezo1 ENSMUST00000148497 ENSMUSP00000121725 TRANSLATION nonsense_mediated_decay start - 5 1085.0 0.0 11.45 0.0 322.3 17.0 -4,-6 0.0142 4 -2.0 MINOR ENSMUSG00000014444 Piezo1 ENSMUST00000156333 ENSMUSP00000114584 TRANSLATION protein_coding - - 1 2547.0 0.0 23.778 0.0 838.2 25.0 -2,-5 0.748 12 8.0 ALTERNATIVE:2 ENSMUSG00000014444 Piezo1 ENSMUST00000155803 - NO_TRANSLATION retained_intron ENSMUSG00000014444 Piezo1 ENSMUST00000123671 - NO_TRANSLATION retained_intron ENSMUSG00000074240 Cib3 ENSMUST00000098630 ENSMUSP00000096231 TRANSLATION protein_coding - CCDS52594.1 1 160.0 15.0 3.33 3.1 39.5 0.0 -4,-6 0.2128 - 16.586 MINOR ENSMUSG00000074240 Cib3 ENSMUST00000211946 - NO_TRANSLATION retained_intron ENSMUSG00000074240 Cib3 ENSMUST00000238973 ENSMUSP00000159168 TRANSLATION protein_coding - - - 187.0 15.0 4.16 34.6 39.5 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000053678 Defb40 ENSMUST00000066258 ENSMUSP00000066465 TRANSLATION protein_coding - CCDS40246.1 1 73.0 0.0 1.0 0.1 43.0 0.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031688 Pou4f2 ENSMUST00000034115 ENSMUSP00000034115 TRANSLATION protein_coding - CCDS22429.1 1 411.0 0.0 0.32 10.9 165.6 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049482 Ctu2 ENSMUST00000151855 ENSMUSP00000133622 TRANSLATION nonsense_mediated_decay - - 1 410.0 3.0 3.907 0.0 55.0 0.0 -4,-5 0.0217 8 -2.0 MINOR ENSMUSG00000049482 Ctu2 ENSMUST00000131934 - NO_TRANSLATION retained_intron ENSMUSG00000049482 Ctu2 ENSMUST00000128472 - NO_TRANSLATION retained_intron ENSMUSG00000049482 Ctu2 ENSMUST00000116412 ENSMUSP00000112113 TRANSLATION protein_coding - CCDS52694.1 1 514.0 3.0 3.7195 0.0 74.7 0.0 -4,-5 0.9903 10 14.628 PRINCIPAL:1 ENSMUSG00000049482 Ctu2 ENSMUST00000212499 ENSMUSP00000148714 TRANSLATION protein_coding start - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000049482 Ctu2 ENSMUST00000146634 ENSMUSP00000119931 TRANSLATION protein_coding stop - 5 111.0 3.0 1.0575 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000049482 Ctu2 ENSMUST00000154099 - NO_TRANSLATION retained_intron ENSMUSG00000049482 Ctu2 ENSMUST00000136253 ENSMUSP00000116104 TRANSLATION protein_coding start - 2 107.0 0.0 0.4875 0.0 0.0 0.0 -3,-6 0.0 2 -2.0 MINOR ENSMUSG00000049482 Ctu2 ENSMUST00000134127 ENSMUSP00000119237 TRANSLATION protein_coding stop - 3 249.0 0.0 1.582 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000049482 Ctu2 ENSMUST00000149925 - NO_TRANSLATION retained_intron ENSMUSG00000019261 Map1s ENSMUST00000213083 - NO_TRANSLATION retained_intron ENSMUSG00000019261 Map1s ENSMUST00000212823 - NO_TRANSLATION retained_intron ENSMUSG00000019261 Map1s ENSMUST00000213001 ENSMUSP00000148773 TRANSLATION protein_coding start/stop - 5 239.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0449 2 -2.0 MINOR ENSMUSG00000019261 Map1s ENSMUST00000211910 ENSMUSP00000148822 TRANSLATION nonsense_mediated_decay - - 2 79.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0171 - -2.0 MINOR ENSMUSG00000019261 Map1s ENSMUST00000212697 - NO_TRANSLATION retained_intron ENSMUSG00000019261 Map1s ENSMUST00000212143 - NO_TRANSLATION retained_intron ENSMUSG00000019261 Map1s ENSMUST00000211880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019261 Map1s ENSMUST00000212544 - NO_TRANSLATION retained_intron ENSMUSG00000019261 Map1s ENSMUST00000212227 ENSMUSP00000148554 TRANSLATION nonsense_mediated_decay - - 1 864.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0899 15 -2.0 MINOR ENSMUSG00000019261 Map1s ENSMUST00000019405 ENSMUSP00000019405 TRANSLATION protein_coding - CCDS22387.1 1 973.0 0.0 1.4 0.1 0.0 0.0 -2,-5 1.0 19 6.0 PRINCIPAL:1 ENSMUSG00000019261 Map1s ENSMUST00000212511 ENSMUSP00000148752 TRANSLATION protein_coding stop - 3 133.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0171 - -2.0 MINOR ENSMUSG00000079058 Adam34 ENSMUST00000212185 ENSMUSP00000148332 TRANSLATION protein_coding - CCDS22271.1 1 714.0 25.0 0.32 0.1 417.7 1.0 0,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000079058 Adam34 ENSMUST00000110411 ENSMUSP00000106041 TRANSLATION protein_coding - CCDS22271.1 5 714.0 25.0 0.32 0.1 417.7 1.0 0,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039960 Rhou ENSMUST00000136615 - NO_TRANSLATION retained_intron ENSMUSG00000039960 Rhou ENSMUST00000045487 ENSMUSP00000038915 TRANSLATION protein_coding - CCDS22762.1 1 261.0 22.0 2.3 6.6 169.6 0.0 -4,-2 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000031448 Adprhl1 ENSMUST00000204916 ENSMUSP00000145145 TRANSLATION protein_coding - - 5 1697.0 0.0 7.33 0.0 171.6 0.0 -3,-4 0.2723 11 12.0 MINOR ENSMUSG00000031448 Adprhl1 ENSMUST00000033825 ENSMUSP00000033825 TRANSLATION protein_coding - CCDS22108.1 1 353.0 0.0 7.33 36.9 171.6 0.0 -3,-4 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000031448 Adprhl1 ENSMUST00000166438 - NO_TRANSLATION retained_intron ENSMUSG00000031448 Adprhl1 ENSMUST00000171619 ENSMUSP00000132014 TRANSLATION protein_coding stop - 5 135.0 0.0 3.0 0.0 68.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031448 Adprhl1 ENSMUST00000168498 ENSMUSP00000131920 TRANSLATION protein_coding stop - 3 205.0 0.0 4.0 0.0 64.1 0.0 -3,-5 0.0 4 -2.0 MINOR ENSMUSG00000079003 Samd1 ENSMUST00000209606 - NO_TRANSLATION retained_intron ENSMUSG00000079003 Samd1 ENSMUST00000095228 ENSMUSP00000092853 TRANSLATION protein_coding - CCDS40404.1 5 519.0 0.0 2.4 0.1 35.8 0.0 -2,-4 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000037316 Bag4 ENSMUST00000210103 - NO_TRANSLATION retained_intron ENSMUSG00000037316 Bag4 ENSMUST00000209948 - NO_TRANSLATION retained_intron ENSMUSG00000037316 Bag4 ENSMUST00000038498 ENSMUSP00000044725 TRANSLATION protein_coding - CCDS22201.1 1 457.0 0.0 1.0 8.8 62.0 0.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000034224 Slc38a8 ENSMUST00000132838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034224 Slc38a8 ENSMUST00000133821 ENSMUSP00000123094 TRANSLATION protein_coding stop - 3 165.0 0.0 0.44 0.0 69.0 5.0 -3,-5 0.0038 - -2.0 MINOR ENSMUSG00000034224 Slc38a8 ENSMUST00000036748 ENSMUSP00000038438 TRANSLATION protein_coding - CCDS22706.1 1 432.0 0.0 2.8805 8.0 189.7 13.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034224 Slc38a8 ENSMUST00000125594 - NO_TRANSLATION retained_intron ENSMUSG00000034224 Slc38a8 ENSMUST00000138061 ENSMUSP00000119987 TRANSLATION protein_coding stop - 3 206.0 0.0 0.838 0.0 83.0 7.0 -3,-5 0.0038 - -2.0 MINOR ENSMUSG00000069867 Pabpn1l ENSMUST00000093059 ENSMUSP00000090747 TRANSLATION protein_coding - CCDS22743.1 1 273.0 0.0 3.3 1.4 57.1 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000069867 Pabpn1l ENSMUST00000212966 ENSMUSP00000148736 TRANSLATION protein_coding - - 1 288.0 0.0 3.3 0.0 57.1 0.0 -4,-5 0.0257 - 8.0 ALTERNATIVE:2 ENSMUSG00000038005 Hpf1 ENSMUST00000037190 ENSMUSP00000047235 TRANSLATION protein_coding - CCDS52553.1 1 346.0 0.0 7.75 7.4 377.6 0.0 -4,-6 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000038005 Hpf1 ENSMUST00000146863 ENSMUSP00000117164 TRANSLATION protein_coding - - 2 35.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000038005 Hpf1 ENSMUST00000209553 - NO_TRANSLATION retained_intron ENSMUSG00000038005 Hpf1 ENSMUST00000136098 ENSMUSP00000119448 TRANSLATION nonsense_mediated_decay - - 3 89.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038005 Hpf1 ENSMUST00000211016 - NO_TRANSLATION retained_intron ENSMUSG00000038005 Hpf1 ENSMUST00000149267 ENSMUSP00000118277 TRANSLATION nonsense_mediated_decay - - 1 89.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000038005 Hpf1 ENSMUST00000134886 - NO_TRANSLATION retained_intron ENSMUSG00000092544 Gm20422 ENSMUST00000149782 ENSMUSP00000123252 TRANSLATION protein_coding,RT stop - 2 255.0 13.0 3.95 0.0 120.9 0.0 -4,-5 0.7338 - -2.0 PRINCIPAL:5 ENSMUSG00000092544 Gm20422 ENSMUST00000126915 ENSMUSP00000122850 TRANSLATION protein_coding,RT start/stop - 5 218.0 6.0 3.15 0.0 77.2 0.0 -4,-5 0.0017 - -2.0 ALTERNATIVE:2 ENSMUSG00000109941 Exosc6 ENSMUST00000210390 ENSMUSP00000147696 TRANSLATION protein_coding - CCDS85611.1 - 273.0 0.0 0.5 1.8 92.5 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000039067 Psmd7 ENSMUST00000044106 ENSMUSP00000041968 TRANSLATION protein_coding - CCDS22650.1 1 321.0 0.0 6.5 0.0 238.2 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000039067 Psmd7 ENSMUST00000213080 - NO_TRANSLATION retained_intron ENSMUSG00000031639 Tlr3 ENSMUST00000210354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031639 Tlr3 ENSMUST00000210996 ENSMUSP00000148263 TRANSLATION protein_coding stop - 2 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0053 - -2.0 MINOR ENSMUSG00000031639 Tlr3 ENSMUST00000167106 ENSMUSP00000126556 TRANSLATION protein_coding - CCDS22278.1 1 905.0 4.0 5.598 4.2 273.9 1.0 0,-4 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000031639 Tlr3 ENSMUST00000209772 ENSMUSP00000147738 TRANSLATION protein_coding - CCDS22278.1 1 905.0 4.0 5.598 4.2 273.9 1.0 0,-4 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000031639 Tlr3 ENSMUST00000209269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031639 Tlr3 ENSMUST00000034056 ENSMUSP00000034056 TRANSLATION protein_coding - CCDS22278.1 1 905.0 4.0 5.598 4.2 273.9 1.0 0,-4 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000031639 Tlr3 ENSMUST00000209651 ENSMUSP00000147961 TRANSLATION protein_coding stop - 5 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0222 - -2.0 MINOR ENSMUSG00000031639 Tlr3 ENSMUST00000210013 ENSMUSP00000147783 TRANSLATION protein_coding start - - 306.0 0.0 1.0 0.0 74.0 1.0 -4,-5 0.001 3 -2.0 MINOR ENSMUSG00000031639 Tlr3 ENSMUST00000211370 ENSMUSP00000148127 TRANSLATION protein_coding stop - 2 93.0 0.0 1.198 0.0 0.0 0.0 0,-4 0.0026 1 -2.0 MINOR ENSMUSG00000108900 Ccdc194 ENSMUST00000207913 ENSMUSP00000146946 TRANSLATION protein_coding - - 1 234.0 0.0 3.2 0.4 0.0 0.0 -2,-4 0.658 - 6.0 PRINCIPAL:1 ENSMUSG00000038506 Dcun1d2 ENSMUST00000110840 ENSMUSP00000106464 TRANSLATION protein_coding - CCDS40227.1 1 199.0 0.0 4.33 0.0 45.1 0.0 -4,-7 0.003 5 2.34 MINOR ENSMUSG00000038506 Dcun1d2 ENSMUST00000110839 ENSMUSP00000106463 TRANSLATION protein_coding - CCDS40229.1 1 207.0 0.0 4.448 0.3 104.4 0.0 -4,-7 0.0028 6 4.44 MINOR ENSMUSG00000038506 Dcun1d2 ENSMUST00000045366 ENSMUSP00000047208 TRANSLATION protein_coding - CCDS40228.1 1 259.0 0.0 6.16 32.6 173.3 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000038506 Dcun1d2 ENSMUST00000204840 - NO_TRANSLATION retained_intron ENSMUSG00000038506 Dcun1d2 ENSMUST00000204673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038506 Dcun1d2 ENSMUST00000110838 ENSMUSP00000106462 TRANSLATION protein_coding - CCDS40230.1 1 197.0 0.0 3.5 0.0 45.1 0.0 -4,-7 0.0027 5 0.678 MINOR ENSMUSG00000038506 Dcun1d2 ENSMUST00000203467 ENSMUSP00000145399 TRANSLATION nonsense_mediated_decay - - 1 87.0 0.0 1.0 0.0 45.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000038506 Dcun1d2 ENSMUST00000203604 ENSMUSP00000145430 TRANSLATION protein_coding - - 1 219.0 0.0 4.25 0.0 103.4 0.0 -4,-7 0.0 6 3.984 MINOR ENSMUSG00000061959 Ces1e ENSMUST00000175983 - NO_TRANSLATION retained_intron ENSMUSG00000061959 Ces1e ENSMUST00000034173 ENSMUSP00000034173 TRANSLATION protein_coding - CCDS22529.1 1 562.0 6.0 12.0 9.4 557.8 0.0 3,-2 1.0 12 17.0 PRINCIPAL:4 ENSMUSG00000061959 Ces1e ENSMUST00000176282 ENSMUSP00000135636 TRANSLATION protein_coding - - 5 561.0 6.0 12.0 9.4 557.8 0.0 3,-2 0.8416 12 17.0 ALTERNATIVE:1 ENSMUSG00000031809 1700018B08Rik ENSMUST00000182739 ENSMUSP00000138269 TRANSLATION nonsense_mediated_decay - - 1 58.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000031809 1700018B08Rik ENSMUST00000034265 ENSMUSP00000034265 TRANSLATION protein_coding - CCDS52692.1 1 213.0 0.0 0.0 0.0 381.8 0.0 -4,0 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031809 1700018B08Rik ENSMUST00000183280 ENSMUSP00000138141 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000031809 1700018B08Rik ENSMUST00000182460 ENSMUSP00000138106 TRANSLATION protein_coding stop - 5 188.0 0.0 0.0 0.0 282.5 0.0 -4,-7 0.0018 - -2.0 MINOR ENSMUSG00000039785 Defb5 ENSMUST00000110763 ENSMUSP00000106391 TRANSLATION protein_coding - CCDS40257.1 1 64.0 0.0 1.0 1.1 32.9 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000033624 Pdpr ENSMUST00000135302 ENSMUSP00000117570 TRANSLATION protein_coding stop - 2 145.0 16.0 2.75 0.0 68.9 0.0 -4,0 0.0 4 -2.0 MINOR ENSMUSG00000033624 Pdpr ENSMUST00000039333 ENSMUSP00000046639 TRANSLATION protein_coding - CCDS22670.1 1 878.0 38.0 16.75 22.0 562.1 0.0 -4,0 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000033624 Pdpr ENSMUST00000144377 ENSMUSP00000121325 TRANSLATION nonsense_mediated_decay - - 1 671.0 38.0 13.75 0.0 389.9 0.0 -4,0 0.0026 20 -2.0 MINOR ENSMUSG00000038206 Fbxo8 ENSMUST00000110322 ENSMUSP00000105951 TRANSLATION protein_coding - - 1 161.0 0.0 1.6 0.0 30.2 0.0 -4,-1 0.0 - 0.0 MINOR ENSMUSG00000038206 Fbxo8 ENSMUST00000211294 - NO_TRANSLATION retained_intron ENSMUSG00000038206 Fbxo8 ENSMUST00000156840 - NO_TRANSLATION retained_intron ENSMUSG00000038206 Fbxo8 ENSMUST00000040218 ENSMUSP00000037544 TRANSLATION protein_coding - CCDS22314.1 1 319.0 0.0 4.93 27.2 157.3 0.0 -4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038206 Fbxo8 ENSMUST00000210863 ENSMUSP00000148124 TRANSLATION protein_coding stop - 3 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031757 Mt4 ENSMUST00000034207 ENSMUSP00000034207 TRANSLATION protein_coding - CCDS40435.1 1 62.0 7.0 1.632 19.5 72.1 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000052566 Hook2 ENSMUST00000209652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052566 Hook2 ENSMUST00000064495 ENSMUSP00000067752 TRANSLATION protein_coding - CCDS22489.1 1 716.0 0.0 4.0 8.9 913.1 0.0 -4,-7 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000052566 Hook2 ENSMUST00000210326 ENSMUSP00000148078 TRANSLATION protein_coding - - 1 611.0 0.0 4.0 0.0 705.7 0.0 -4,-7 0.0719 10 6.0 MINOR ENSMUSG00000052566 Hook2 ENSMUST00000209764 ENSMUSP00000148237 TRANSLATION protein_coding - - 5 692.0 0.0 4.0 0.0 431.2 0.0 -4,-7 0.0347 13 6.0 MINOR ENSMUSG00000043903 Zfp469 ENSMUST00000187142 ENSMUSP00000158621 TRANSLATION protein_coding - - - 3765.0 19.0 0.0 0.0 18.5 0.0 -4,-7 0.9198 - 12.0 PRINCIPAL:1 ENSMUSG00000043903 Zfp469 ENSMUST00000055537 ENSMUSP00000158742 TRANSLATION protein_coding start - - 597.0 12.0 0.0 0.0 18.5 0.0 -4,-2 0.1079 - -2.0 MINOR ENSMUSG00000058618 Defa39 ENSMUST00000071886 ENSMUSP00000071783 TRANSLATION protein_coding - CCDS22156.1 1 116.0 0.0 0.0 0.0 72.8 0.0 4,-1 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000031751 Amfr ENSMUST00000139702 - NO_TRANSLATION retained_intron ENSMUSG00000031751 Amfr ENSMUST00000143265 ENSMUSP00000134924 TRANSLATION protein_coding stop - 5 105.0 0.0 1.05 0.0 0.0 5.0 -1,-4 0.0024 - -2.0 MINOR ENSMUSG00000031751 Amfr ENSMUST00000053766 ENSMUSP00000052258 TRANSLATION protein_coding - CCDS22533.1 1 639.0 8.0 5.05 6.3 83.5 8.0 -2,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000031751 Amfr ENSMUST00000137475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031792 Usb1 ENSMUST00000034245 ENSMUSP00000034245 TRANSLATION protein_coding - CCDS22560.1 1 267.0 0.0 4.65 7.8 222.1 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000031792 Usb1 ENSMUST00000145060 - NO_TRANSLATION retained_intron ENSMUSG00000031792 Usb1 ENSMUST00000126180 ENSMUSP00000122529 TRANSLATION protein_coding stop - 3 113.0 0.0 1.9 0.0 110.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031792 Usb1 ENSMUST00000213059 ENSMUSP00000148673 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031792 Usb1 ENSMUST00000151223 - NO_TRANSLATION retained_intron ENSMUSG00000038482 Tfdp1 ENSMUST00000209396 ENSMUSP00000147662 TRANSLATION protein_coding - CCDS85506.1 1 290.0 0.0 5.95 0.4 296.8 0.0 -4,-5 0.0503 1 10.41 MINOR ENSMUSG00000038482 Tfdp1 ENSMUST00000211606 - NO_TRANSLATION retained_intron ENSMUSG00000038482 Tfdp1 ENSMUST00000210501 ENSMUSP00000147536 TRANSLATION nonsense_mediated_decay - - 5 106.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038482 Tfdp1 ENSMUST00000170909 ENSMUSP00000127952 TRANSLATION protein_coding - CCDS22110.1 1 410.0 0.0 6.35 1.4 310.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000038482 Tfdp1 ENSMUST00000209885 ENSMUSP00000147881 TRANSLATION protein_coding - CCDS22110.1 1 410.0 0.0 6.35 1.4 310.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000038482 Tfdp1 ENSMUST00000210518 - NO_TRANSLATION retained_intron ENSMUSG00000038482 Tfdp1 ENSMUST00000209945 ENSMUSP00000147601 TRANSLATION protein_coding start/stop - 2 183.0 0.0 3.65 0.0 175.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000038482 Tfdp1 ENSMUST00000210165 ENSMUSP00000147345 TRANSLATION protein_coding stop - 3 128.0 0.0 2.15 0.0 83.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038482 Tfdp1 ENSMUST00000209282 ENSMUSP00000148051 TRANSLATION protein_coding stop - 3 124.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000014791 Elmo3 ENSMUST00000212655 - NO_TRANSLATION retained_intron ENSMUSG00000014791 Elmo3 ENSMUST00000212046 ENSMUSP00000148595 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 1.1 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000014791 Elmo3 ENSMUST00000212033 ENSMUSP00000148820 TRANSLATION protein_coding - - 5 703.0 0.0 14.4975 1.2 442.6 0.0 -4,-6 0.1992 11 11.034 MINOR ENSMUSG00000014791 Elmo3 ENSMUST00000109375 ENSMUSP00000105000 TRANSLATION protein_coding - CCDS22598.1 1 720.0 0.0 14.9975 22.7 442.6 0.0 -4,-6 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000014791 Elmo3 ENSMUST00000212345 - NO_TRANSLATION retained_intron ENSMUSG00000058056 Palld ENSMUST00000135439 ENSMUSP00000119792 TRANSLATION protein_coding stop - 1 336.0 0.0 5.72375 0.0 145.6 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000058056 Palld ENSMUST00000136825 - NO_TRANSLATION retained_intron ENSMUSG00000058056 Palld ENSMUST00000123523 - NO_TRANSLATION retained_intron ENSMUSG00000058056 Palld ENSMUST00000149042 - NO_TRANSLATION retained_intron ENSMUSG00000058056 Palld ENSMUST00000121493 ENSMUSP00000113874 TRANSLATION protein_coding - CCDS80881.1 1 1002.0 0.0 9.28875 0.3 288.9 0.0 -4,-7 0.1144 27 4.902 MINOR ENSMUSG00000058056 Palld ENSMUST00000153495 - NO_TRANSLATION retained_intron ENSMUSG00000058056 Palld ENSMUST00000034057 ENSMUSP00000034057 TRANSLATION protein_coding - CCDS40350.1 5 1113.0 0.0 9.64125 1.0 370.5 0.0 -4,-5 0.397 28 10.506 MINOR ENSMUSG00000058056 Palld ENSMUST00000121200 ENSMUSP00000112374 TRANSLATION protein_coding - CCDS80880.1 1 663.0 0.0 7.12375 3.5 213.8 0.0 -4,0 0.4308 21 1.0 MINOR ENSMUSG00000058056 Palld ENSMUST00000121785 ENSMUSP00000112442 TRANSLATION protein_coding - CCDS80882.1 1 1408.0 0.0 10.38875 0.4 370.5 0.0 -4,-5 1.0 33 12.0 PRINCIPAL:1 ENSMUSG00000039057 Myo16 ENSMUST00000214643 ENSMUSP00000149384 TRANSLATION protein_coding stop - 5 240.0 0.0 2.916 0.0 43.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039057 Myo16 ENSMUST00000207477 ENSMUSP00000146677 TRANSLATION protein_coding - CCDS40218.2 1 1919.0 14.0 15.662 0.0 1025.0 0.0 -4,-5 1.0 16 13.2 PRINCIPAL:2 ENSMUSG00000039057 Myo16 ENSMUST00000207204 ENSMUSP00000146796 TRANSLATION protein_coding - - 1 1863.0 8.0 14.51 0.0 916.8 0.0 -4,-5 0.1849 15 6.894 MINOR ENSMUSG00000039057 Myo16 ENSMUST00000208309 ENSMUSP00000147072 TRANSLATION protein_coding - - 1 629.0 14.0 9.748 0.0 270.1 0.0 -4,-5 0.0008 3 8.0 MINOR ENSMUSG00000039057 Myo16 ENSMUST00000042103 ENSMUSP00000049345 TRANSLATION protein_coding - - 5 1877.0 14.0 15.662 0.3 1025.0 0.0 -4,-5 0.4627 16 13.2 ALTERNATIVE:2 ENSMUSG00000026317 Cln8 ENSMUST00000123990 ENSMUSP00000119031 TRANSLATION protein_coding stop - 3 124.0 0.0 2.75 0.0 0.0 2.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000026317 Cln8 ENSMUST00000027554 ENSMUSP00000027554 TRANSLATION protein_coding - CCDS40239.1 1 288.0 0.0 4.75 8.2 44.9 5.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000026317 Cln8 ENSMUST00000132001 ENSMUSP00000116550 TRANSLATION protein_coding stop - 2 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000026317 Cln8 ENSMUST00000128839 ENSMUSP00000121618 TRANSLATION protein_coding stop - 3 77.0 0.0 1.75 0.0 0.0 2.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000026317 Cln8 ENSMUST00000133578 ENSMUSP00000122765 TRANSLATION protein_coding stop - 3 33.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074440 Defa3 ENSMUST00000098893 ENSMUSP00000096492 TRANSLATION protein_coding - CCDS40270.1 1 93.0 0.0 1.0 0.1 121.8 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037415 Ranbp10 ENSMUST00000212856 - NO_TRANSLATION retained_intron ENSMUSG00000037415 Ranbp10 ENSMUST00000239468 ENSMUSP00000159340 TRANSLATION protein_coding - - - 620.0 0.0 5.83 12.4 276.9 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000037415 Ranbp10 ENSMUST00000041400 ENSMUSP00000040045 TRANSLATION protein_coding - CCDS22613.1 1 648.0 0.0 5.83 0.1 276.9 0.0 -2,-5 0.3231 10 12.0 MINOR ENSMUSG00000045248 Med26 ENSMUST00000058534 ENSMUSP00000058697 TRANSLATION protein_coding - CCDS22416.1 1 588.0 0.0 1.5 0.4 593.2 0.0 -4,-2 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000005483 Dnajb1 ENSMUST00000212300 ENSMUSP00000148685 TRANSLATION protein_coding - CCDS85571.1 1 240.0 0.0 2.0 9.0 150.3 0.0 -4,-5 0.3243 8 4.444 MINOR ENSMUSG00000005483 Dnajb1 ENSMUST00000005620 ENSMUSP00000005620 TRANSLATION protein_coding - CCDS22456.1 1 340.0 0.0 3.75 21.0 244.6 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000037790 Defb7 ENSMUST00000047851 ENSMUSP00000045523 TRANSLATION protein_coding - CCDS40261.1 1 71.0 0.0 1.0 0.0 32.9 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045538 Ddx28 ENSMUST00000058579 ENSMUSP00000058950 TRANSLATION protein_coding - CCDS22626.1 - 540.0 12.0 0.32 5.8 216.5 0.0 -4,-1 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000031712 Il15 ENSMUST00000034148 ENSMUSP00000034148 TRANSLATION protein_coding - CCDS40401.1 1 162.0 0.0 3.25 10.3 168.3 0.0 -3,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031712 Il15 ENSMUST00000210885 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031712 Il15 ENSMUST00000211722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031712 Il15 ENSMUST00000210094 ENSMUSP00000147312 TRANSLATION protein_coding stop - 3 48.0 0.0 0.0 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000031712 Il15 ENSMUST00000211282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031712 Il15 ENSMUST00000209573 ENSMUSP00000148256 TRANSLATION protein_coding - CCDS40401.1 5 162.0 0.0 3.25 10.3 168.3 0.0 -3,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031712 Il15 ENSMUST00000211565 ENSMUSP00000147319 TRANSLATION nonsense_mediated_decay - - 3 61.0 0.0 0.0 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000031712 Il15 ENSMUST00000210472 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031712 Il15 ENSMUST00000209363 ENSMUSP00000147848 TRANSLATION protein_coding - CCDS40401.1 1 162.0 0.0 3.25 10.3 168.3 0.0 -3,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031712 Il15 ENSMUST00000209687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033409 Syce1l ENSMUST00000034219 ENSMUSP00000034219 TRANSLATION protein_coding - CCDS40484.1 1 242.0 0.0 2.0 0.0 123.3 0.0 -4,-5 0.0881 - 3.252 MINOR ENSMUSG00000033409 Syce1l ENSMUST00000212017 - NO_TRANSLATION retained_intron ENSMUSG00000033409 Syce1l ENSMUST00000095173 ENSMUSP00000092796 TRANSLATION protein_coding - CCDS40483.1 1 247.0 0.0 3.3725 0.1 148.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000033409 Syce1l ENSMUST00000212269 ENSMUSP00000148356 TRANSLATION protein_coding - CCDS85617.1 1 226.0 0.0 3.3725 0.0 148.7 0.0 -4,-5 0.2256 - 6.0 ALTERNATIVE:2 ENSMUSG00000035151 Elmod2 ENSMUST00000150124 - NO_TRANSLATION retained_intron ENSMUSG00000035151 Elmod2 ENSMUST00000126079 - NO_TRANSLATION retained_intron ENSMUSG00000035151 Elmod2 ENSMUST00000141565 - NO_TRANSLATION retained_intron ENSMUSG00000035151 Elmod2 ENSMUST00000139041 ENSMUSP00000147732 TRANSLATION protein_coding stop - 3 189.0 0.0 4.46 0.0 103.2 0.0 -4,-2 0.0 7 -2.0 MINOR ENSMUSG00000035151 Elmod2 ENSMUST00000177594 ENSMUSP00000137044 TRANSLATION protein_coding - CCDS22450.1 1 293.0 0.0 6.96 16.0 175.8 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000035151 Elmod2 ENSMUST00000053902 ENSMUSP00000052287 TRANSLATION protein_coding - CCDS22450.1 1 293.0 0.0 6.96 16.0 175.8 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000071078 Nr2c2ap ENSMUST00000212851 - NO_TRANSLATION retained_intron ENSMUSG00000071078 Nr2c2ap ENSMUST00000211898 ENSMUSP00000148493 TRANSLATION protein_coding - - 1 54.0 0.0 1.5 0.0 0.0 0.0 -4,-7 0.0085 - 0.678 MINOR ENSMUSG00000071078 Nr2c2ap ENSMUST00000095273 ENSMUSP00000092907 TRANSLATION protein_coding - CCDS40366.1 1 140.0 0.0 4.16 20.3 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000031551 Ido1 ENSMUST00000033956 ENSMUSP00000033956 TRANSLATION protein_coding - CCDS40299.1 1 407.0 0.0 8.15 3.4 397.2 0.0 -4,-6 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000031551 Ido1 ENSMUST00000110667 ENSMUSP00000106295 TRANSLATION protein_coding - CCDS80866.1 1 316.0 0.0 5.8 0.3 322.3 0.0 -4,-5 0.0873 12 2.808 MINOR ENSMUSG00000035964 Tmem59l ENSMUST00000210365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035964 Tmem59l ENSMUST00000045286 ENSMUSP00000043659 TRANSLATION protein_coding - CCDS22368.1 1 337.0 0.0 0.0 0.0 217.3 0.0 4,-1 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000031610 Scrg1 ENSMUST00000034023 ENSMUSP00000034023 TRANSLATION protein_coding - CCDS40342.1 1 98.0 0.0 1.5 17.5 156.7 0.0 4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000045337 Defb11 ENSMUST00000051965 ENSMUSP00000053932 TRANSLATION protein_coding - CCDS52515.1 1 77.0 0.0 1.0 0.0 44.4 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050190 Adam34l ENSMUST00000056023 ENSMUSP00000058858 TRANSLATION protein_coding - CCDS40332.1 - 736.0 20.0 0.32 0.0 403.0 0.0 -1,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000041203 Trir ENSMUST00000047281 ENSMUSP00000044129 TRANSLATION protein_coding - CCDS22490.1 1 173.0 0.0 0.0 8.9 0.0 0.0 -4,-2 1.0 6 3.0 PRINCIPAL:1 ENSMUSG00000031877 Ces2g ENSMUST00000212330 - NO_TRANSLATION retained_intron ENSMUSG00000031877 Ces2g ENSMUST00000043183 ENSMUSP00000049315 TRANSLATION protein_coding - CCDS22589.1 1 560.0 6.0 10.5 3.5 567.4 0.0 3,-1 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000031453 Rasa3 ENSMUST00000132439 - NO_TRANSLATION retained_intron ENSMUSG00000031453 Rasa3 ENSMUST00000117551 ENSMUSP00000112998 TRANSLATION protein_coding - CCDS40234.1 1 834.0 14.0 8.1175 30.3 333.1 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000031453 Rasa3 ENSMUST00000154454 ENSMUSP00000122968 TRANSLATION nonsense_mediated_decay - - 3 39.0 0.0 0.1 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031453 Rasa3 ENSMUST00000127418 - NO_TRANSLATION retained_intron ENSMUSG00000031453 Rasa3 ENSMUST00000137822 - NO_TRANSLATION retained_intron ENSMUSG00000031453 Rasa3 ENSMUST00000132637 - NO_TRANSLATION retained_intron ENSMUSG00000002345 Borcs8 ENSMUST00000110139 ENSMUSP00000105766 TRANSLATION protein_coding - CCDS85553.1 3 113.0 0.0 2.948 0.0 134.6 0.0 -4,-5 0.0214 3 10.968 MINOR ENSMUSG00000002345 Borcs8 ENSMUST00000123976 - NO_TRANSLATION retained_intron ENSMUSG00000002345 Borcs8 ENSMUST00000129668 ENSMUSP00000137694 TRANSLATION nonsense_mediated_decay - - 1 80.0 0.0 2.25 0.0 103.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002345 Borcs8 ENSMUST00000002418 ENSMUSP00000002418 TRANSLATION protein_coding - CCDS52568.1 1 120.0 0.0 3.25 6.4 141.7 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000002345 Borcs8 ENSMUST00000123760 ENSMUSP00000118102 TRANSLATION nonsense_mediated_decay - - 1 80.0 0.0 2.25 0.0 103.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031959 Wdr59 ENSMUST00000211981 ENSMUSP00000148397 TRANSLATION protein_coding - CCDS22675.1 1 991.0 0.0 4.23 0.0 82.0 0.0 -4,-5 0.3982 19 12.0 MINOR ENSMUSG00000031959 Wdr59 ENSMUST00000212327 - NO_TRANSLATION retained_intron ENSMUSG00000031959 Wdr59 ENSMUST00000034437 ENSMUSP00000034437 TRANSLATION protein_coding - CCDS52672.1 1 993.0 0.0 4.23 12.3 82.0 0.0 -4,-5 0.9507 20 14.772 MINOR ENSMUSG00000031959 Wdr59 ENSMUST00000038193 ENSMUSP00000043671 TRANSLATION protein_coding - CCDS85613.1 1 974.0 0.0 4.23 17.3 82.0 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000003824 Syce2 ENSMUST00000136026 ENSMUSP00000122159 TRANSLATION protein_coding - CCDS22481.1 1 171.0 0.0 2.0 0.4 0.0 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:2 ENSMUSG00000003824 Syce2 ENSMUST00000170296 ENSMUSP00000131438 TRANSLATION protein_coding - CCDS52620.1 2 177.0 0.0 2.0 0.4 0.0 0.0 -4,-5 0.3531 2 6.0 ALTERNATIVE:2 ENSMUSG00000003824 Syce2 ENSMUST00000003922 ENSMUSP00000003922 TRANSLATION nonsense_mediated_decay - - 2 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0193 - -2.0 MINOR ENSMUSG00000003824 Syce2 ENSMUST00000144466 - NO_TRANSLATION retained_intron ENSMUSG00000057116 Semp2l2a ENSMUST00000071308 ENSMUSP00000096518 TRANSLATION protein_coding - CCDS52490.1 - 502.0 5.0 0.8 0.0 146.4 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000031826 Usp10 ENSMUST00000142432 - NO_TRANSLATION retained_intron ENSMUSG00000031826 Usp10 ENSMUST00000135210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031826 Usp10 ENSMUST00000134729 ENSMUSP00000134182 TRANSLATION protein_coding start - 3 88.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031826 Usp10 ENSMUST00000143615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031826 Usp10 ENSMUST00000139648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031826 Usp10 ENSMUST00000108988 ENSMUSP00000104616 TRANSLATION protein_coding - CCDS80938.1 1 792.0 0.0 5.2675 3.5 170.3 0.0 -4,-5 0.9975 11 9.0 ALTERNATIVE:2 ENSMUSG00000031826 Usp10 ENSMUST00000144458 ENSMUSP00000123590 TRANSLATION protein_coding - CCDS40495.1 1 793.0 0.0 5.2675 3.5 170.3 0.0 -4,-5 1.0 11 9.0 PRINCIPAL:4 ENSMUSG00000031826 Usp10 ENSMUST00000148767 - NO_TRANSLATION retained_intron ENSMUSG00000031826 Usp10 ENSMUST00000211935 - NO_TRANSLATION retained_intron ENSMUSG00000031826 Usp10 ENSMUST00000125066 - NO_TRANSLATION retained_intron ENSMUSG00000031826 Usp10 ENSMUST00000137310 - NO_TRANSLATION retained_intron ENSMUSG00000031826 Usp10 ENSMUST00000212612 - NO_TRANSLATION retained_intron ENSMUSG00000031826 Usp10 ENSMUST00000108982 ENSMUSP00000104610 TRANSLATION protein_coding stop - 5 114.0 0.0 1.2725 0.0 26.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000036469 Marchf1 ENSMUST00000110258 ENSMUSP00000105887 TRANSLATION protein_coding - CCDS80884.1 5 289.0 8.0 3.375 16.8 57.8 4.0 -4,-7 0.9503 - 17.068 ALTERNATIVE:1 ENSMUSG00000036469 Marchf1 ENSMUST00000098708 ENSMUSP00000096305 TRANSLATION protein_coding - CCDS52560.1 5 285.0 8.0 3.375 16.8 57.8 4.0 -4,-7 0.9651 - 17.068 ALTERNATIVE:1 ENSMUSG00000036469 Marchf1 ENSMUST00000110253 ENSMUSP00000105882 TRANSLATION protein_coding - - 1 279.0 8.0 3.375 0.0 57.8 4.0 -4,-6 0.0793 1 14.0 MINOR ENSMUSG00000036469 Marchf1 ENSMUST00000110255 ENSMUSP00000105884 TRANSLATION protein_coding - CCDS52560.1 1 285.0 8.0 3.375 16.8 57.8 4.0 -4,-7 0.9651 - 17.068 ALTERNATIVE:1 ENSMUSG00000036469 Marchf1 ENSMUST00000039540 ENSMUSP00000044070 TRANSLATION protein_coding - CCDS52561.1 1 275.0 8.0 3.375 0.0 57.8 4.0 -4,-6 0.1531 1 14.0 MINOR ENSMUSG00000036469 Marchf1 ENSMUST00000152320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036469 Marchf1 ENSMUST00000178982 ENSMUSP00000136545 TRANSLATION protein_coding - CCDS80884.1 5 289.0 8.0 3.375 16.8 57.8 4.0 -4,-7 0.9503 - 17.068 ALTERNATIVE:1 ENSMUSG00000036469 Marchf1 ENSMUST00000110256 ENSMUSP00000105885 TRANSLATION protein_coding - - 5 540.0 8.0 3.375 3.5 57.8 4.0 -4,-7 0.2579 - 14.484 MINOR ENSMUSG00000036469 Marchf1 ENSMUST00000155804 - NO_TRANSLATION retained_intron ENSMUSG00000036469 Marchf1 ENSMUST00000110259 ENSMUSP00000105888 TRANSLATION protein_coding - CCDS22333.1 1 285.0 8.0 3.375 21.6 57.8 4.0 -4,-6 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000036469 Marchf1 ENSMUST00000072482 ENSMUSP00000072302 TRANSLATION protein_coding - CCDS22333.1 5 285.0 8.0 3.375 21.6 57.8 4.0 -4,-6 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000031683 Lsm6 ENSMUST00000126174 - NO_TRANSLATION retained_intron ENSMUSG00000031683 Lsm6 ENSMUST00000051867 ENSMUSP00000049722 TRANSLATION protein_coding - CCDS40396.1 1 80.0 5.0 2.33 36.9 70.1 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000031683 Lsm6 ENSMUST00000130325 ENSMUSP00000119841 TRANSLATION protein_coding - CCDS40396.1 1 80.0 5.0 2.33 36.9 70.1 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000031683 Lsm6 ENSMUST00000146824 ENSMUSP00000148221 TRANSLATION protein_coding - CCDS40396.1 2 80.0 5.0 2.33 36.9 70.1 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000019731 Slc35e1 ENSMUST00000152080 ENSMUSP00000115754 TRANSLATION protein_coding - CCDS22415.2 1 409.0 0.0 1.955 0.0 309.3 0.0 -2,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000019731 Slc35e1 ENSMUST00000141352 - NO_TRANSLATION retained_intron ENSMUSG00000031461 Myom2 ENSMUST00000131251 - NO_TRANSLATION retained_intron ENSMUSG00000031461 Myom2 ENSMUST00000135393 - NO_TRANSLATION retained_intron ENSMUSG00000031461 Myom2 ENSMUST00000033842 ENSMUSP00000033842 TRANSLATION protein_coding - CCDS22123.1 1 1463.0 0.0 20.88 6.9 430.0 0.0 -4,-2 1.0 79 14.0 PRINCIPAL:1 ENSMUSG00000031461 Myom2 ENSMUST00000140033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031461 Myom2 ENSMUST00000135908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054717 Hmgb2 ENSMUST00000211198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054717 Hmgb2 ENSMUST00000067925 ENSMUSP00000065940 TRANSLATION protein_coding - CCDS40343.1 1 210.0 0.0 3.4 1.4 189.0 0.0 -4,-6 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000054717 Hmgb2 ENSMUST00000210871 ENSMUSP00000147297 TRANSLATION protein_coding stop - 5 99.0 0.0 2.0 0.0 99.4 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000055976 Cldn23 ENSMUST00000210370 ENSMUSP00000147260 TRANSLATION protein_coding start - 2 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055976 Cldn23 ENSMUST00000060128 ENSMUSP00000049725 TRANSLATION protein_coding - CCDS22246.1 - 296.0 0.0 1.0 6.1 61.4 0.0 -1,-3 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000048827 Pkd1l3 ENSMUST00000212545 ENSMUSP00000148503 TRANSLATION protein_coding start - 1 816.0 0.0 3.67 0.0 285.4 12.0 -4,-5 0.0079 - -2.0 MINOR ENSMUSG00000048827 Pkd1l3 ENSMUST00000213034 - NO_TRANSLATION retained_intron ENSMUSG00000048827 Pkd1l3 ENSMUST00000109242 ENSMUSP00000104865 TRANSLATION protein_coding - CCDS40472.1 1 2201.0 0.0 5.335 0.0 395.7 14.0 0,-5 0.6829 - 8.0 ALTERNATIVE:2 ENSMUSG00000048827 Pkd1l3 ENSMUST00000057344 ENSMUSP00000051512 TRANSLATION protein_coding - CCDS22654.1 1 2151.0 0.0 5.335 0.0 395.7 14.0 0,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000048827 Pkd1l3 ENSMUST00000212537 ENSMUSP00000148592 TRANSLATION protein_coding - CCDS85608.1 1 2191.0 0.0 5.335 0.0 395.7 14.0 0,-5 0.6874 - 8.0 ALTERNATIVE:2 ENSMUSG00000048827 Pkd1l3 ENSMUST00000212609 - NO_TRANSLATION retained_intron ENSMUSG00000031780 Ccl17 ENSMUST00000034232 ENSMUSP00000034232 TRANSLATION protein_coding - CCDS57633.1 1 103.0 0.0 2.0 0.3 65.7 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000000759 Tubgcp3 ENSMUST00000165321 ENSMUSP00000131051 TRANSLATION nonsense_mediated_decay start - 3 86.0 0.0 0.2 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000000759 Tubgcp3 ENSMUST00000164774 ENSMUSP00000127741 TRANSLATION nonsense_mediated_decay - - 1 364.0 0.0 4.9 0.0 49.4 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000000759 Tubgcp3 ENSMUST00000164861 - NO_TRANSLATION retained_intron ENSMUSG00000000759 Tubgcp3 ENSMUST00000172056 ENSMUSP00000130106 TRANSLATION nonsense_mediated_decay start - 5 70.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000759 Tubgcp3 ENSMUST00000168657 - NO_TRANSLATION retained_intron ENSMUSG00000000759 Tubgcp3 ENSMUST00000000776 ENSMUSP00000000776 TRANSLATION protein_coding - CCDS22103.1 1 905.0 0.0 13.53 24.4 408.0 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000000759 Tubgcp3 ENSMUST00000167547 - NO_TRANSLATION retained_intron ENSMUSG00000000759 Tubgcp3 ENSMUST00000164611 - NO_TRANSLATION retained_intron ENSMUSG00000000759 Tubgcp3 ENSMUST00000164971 - NO_TRANSLATION retained_intron ENSMUSG00000089736 Tgfbr3l ENSMUST00000124750 - NO_TRANSLATION retained_intron ENSMUSG00000089736 Tgfbr3l ENSMUST00000209051 - NO_TRANSLATION retained_intron ENSMUSG00000089736 Tgfbr3l ENSMUST00000142865 - NO_TRANSLATION retained_intron ENSMUSG00000089736 Tgfbr3l ENSMUST00000208029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089736 Tgfbr3l ENSMUST00000110993 ENSMUSP00000106621 TRANSLATION protein_coding - CCDS57603.1 5 297.0 0.0 1.0 0.0 47.0 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050052 Tdrp ENSMUST00000119182 - NO_TRANSLATION retained_intron ENSMUSG00000050052 Tdrp ENSMUST00000193921 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050052 Tdrp ENSMUST00000062613 ENSMUSP00000058371 TRANSLATION protein_coding - CCDS22119.1 1 182.0 0.0 0.0 7.7 230.6 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000050052 Tdrp ENSMUST00000145695 ENSMUSP00000114338 TRANSLATION protein_coding stop - 5 74.0 0.0 0.0 0.0 49.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000050052 Tdrp ENSMUST00000210414 ENSMUSP00000147717 TRANSLATION protein_coding - - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000050052 Tdrp ENSMUST00000194703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055707 Klhl26 ENSMUST00000066597 ENSMUSP00000069077 TRANSLATION protein_coding - CCDS40373.1 1 606.0 0.0 4.25 9.4 299.5 0.0 -4,-7 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000055707 Klhl26 ENSMUST00000209415 ENSMUSP00000147432 TRANSLATION protein_coding - - 1 91.0 0.0 1.0132 0.0 41.2 0.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000055707 Klhl26 ENSMUST00000209567 ENSMUSP00000147349 TRANSLATION protein_coding - - 3 525.0 0.0 3.25 7.6 240.3 0.0 -4,-2 0.4676 11 8.808 MINOR ENSMUSG00000055707 Klhl26 ENSMUST00000210250 ENSMUSP00000147385 TRANSLATION protein_coding - - 1 572.0 0.0 3.25 0.0 238.7 0.0 -4,-7 0.0222 10 6.354 MINOR ENSMUSG00000055707 Klhl26 ENSMUST00000166976 ENSMUSP00000129607 TRANSLATION protein_coding - CCDS52573.1 2 545.0 0.0 3.25 6.0 243.2 0.0 -4,-2 0.3914 11 8.409 MINOR ENSMUSG00000031540 Kat6a ENSMUST00000044331 ENSMUSP00000038181 TRANSLATION protein_coding - CCDS40294.1 1 2003.0 39.0 8.89 0.0 316.0 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:2 ENSMUSG00000031540 Kat6a ENSMUST00000238975 ENSMUSP00000159155 TRANSLATION protein_coding - - - 2053.0 39.0 8.89 0.0 316.0 0.0 -4,-5 0.4207 13 14.0 ALTERNATIVE:2 ENSMUSG00000031540 Kat6a ENSMUST00000130718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031540 Kat6a ENSMUST00000110696 ENSMUSP00000106324 TRANSLATION protein_coding - CCDS40294.1 1 2003.0 39.0 8.89 0.0 316.0 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:2 ENSMUSG00000096265 Potefam3e ENSMUST00000098909 ENSMUSP00000096508 TRANSLATION protein_coding - CCDS52498.1 5 350.0 0.0 3.7 0.0 92.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000082976 Gm15056 ENSMUST00000122025 ENSMUSP00000119300 TRANSLATION protein_coding - - 5 85.0 0.0 0.0 0.1 0.0 0.0 4,-1 0.6274 - 0.0 PRINCIPAL:1 ENSMUSG00000082976 Gm15056 ENSMUST00000167686 - NO_TRANSLATION retained_intron ENSMUSG00000031691 Tnpo2 ENSMUST00000210117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031691 Tnpo2 ENSMUST00000166592 ENSMUSP00000133076 TRANSLATION protein_coding - CCDS22491.1 5 897.0 0.0 20.75 9.8 108.3 0.0 -4,-5 0.7042 8 12.436 MINOR ENSMUSG00000031691 Tnpo2 ENSMUST00000210945 ENSMUSP00000148185 TRANSLATION protein_coding stop - 5 137.0 0.0 3.5 0.0 60.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031691 Tnpo2 ENSMUST00000210461 - NO_TRANSLATION retained_intron ENSMUSG00000031691 Tnpo2 ENSMUST00000210576 - NO_TRANSLATION retained_intron ENSMUSG00000031691 Tnpo2 ENSMUST00000093360 ENSMUSP00000091051 TRANSLATION protein_coding - CCDS22491.1 1 897.0 0.0 20.75 9.8 108.3 0.0 -4,-5 0.7042 8 12.436 MINOR ENSMUSG00000031691 Tnpo2 ENSMUST00000211601 ENSMUSP00000147583 TRANSLATION protein_coding - - 1 887.0 0.0 21.08 33.1 108.3 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000047495 Dlgap2 ENSMUST00000129119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047495 Dlgap2 ENSMUST00000136000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047495 Dlgap2 ENSMUST00000150247 ENSMUSP00000123104 TRANSLATION protein_coding - - 5 1045.0 0.0 2.2 1.5 541.8 0.0 -4,-5 0.7204 16 8.185 ALTERNATIVE:2 ENSMUSG00000047495 Dlgap2 ENSMUST00000141214 - NO_TRANSLATION retained_intron ENSMUSG00000047495 Dlgap2 ENSMUST00000043279 ENSMUSP00000039647 TRANSLATION protein_coding - CCDS52492.1 5 1059.0 0.0 2.2 3.7 535.7 0.0 -4,-5 1.0 17 8.0 PRINCIPAL:4 ENSMUSG00000047495 Dlgap2 ENSMUST00000141155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047495 Dlgap2 ENSMUST00000137130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047495 Dlgap2 ENSMUST00000152652 ENSMUSP00000123078 TRANSLATION protein_coding - CCDS52491.1 1 1060.0 0.0 2.2 2.5 535.7 0.0 -4,-6 0.9019 17 7.556 ALTERNATIVE:2 ENSMUSG00000047495 Dlgap2 ENSMUST00000133298 ENSMUSP00000119613 TRANSLATION protein_coding - CCDS52492.1 1 1059.0 0.0 2.2 3.7 535.7 0.0 -4,-5 1.0 17 8.0 PRINCIPAL:4 ENSMUSG00000051952 Or7c19 ENSMUST00000218663 ENSMUSP00000151714 TRANSLATION protein_coding - CCDS22496.1 5 312.0 0.0 1.0 6.5 184.5 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051952 Or7c19 ENSMUST00000070849 ENSMUSP00000077921 TRANSLATION protein_coding - CCDS22496.1 - 312.0 0.0 1.0 6.5 184.5 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031600 Vps37a ENSMUST00000238575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031600 Vps37a ENSMUST00000238390 - NO_TRANSLATION retained_intron ENSMUSG00000031600 Vps37a ENSMUST00000238339 ENSMUSP00000158798 TRANSLATION protein_coding - - - 397.0 0.0 1.675 0.0 112.7 0.0 -4,-1 0.2006 4 10.182 MINOR ENSMUSG00000031600 Vps37a ENSMUST00000238624 - NO_TRANSLATION retained_intron ENSMUSG00000031600 Vps37a ENSMUST00000238628 - NO_TRANSLATION retained_intron ENSMUSG00000031600 Vps37a ENSMUST00000098817 ENSMUSP00000096415 TRANSLATION protein_coding - CCDS22254.1 1 397.0 0.0 2.05 10.2 124.7 0.0 -4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000031600 Vps37a ENSMUST00000238249 - NO_TRANSLATION retained_intron ENSMUSG00000003484 Cyp4f18 ENSMUST00000125448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003484 Cyp4f18 ENSMUST00000003574 ENSMUSP00000003574 TRANSLATION protein_coding - CCDS22406.1 1 524.0 30.0 11.33 9.6 437.6 0.0 0,-3 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000003484 Cyp4f18 ENSMUST00000141975 ENSMUSP00000148315 TRANSLATION protein_coding start - 3 175.0 17.0 4.25 0.0 191.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036598 Ccdc113 ENSMUST00000041569 ENSMUSP00000049497 TRANSLATION protein_coding - CCDS22563.1 1 377.0 0.0 6.3 9.0 152.7 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000031583 Wrn ENSMUST00000033990 ENSMUSP00000033990 TRANSLATION protein_coding - CCDS22229.1 1 1401.0 16.0 20.425 0.1 411.7 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000031583 Wrn ENSMUST00000211498 ENSMUSP00000147379 TRANSLATION protein_coding - - 1 1158.0 16.0 15.675 0.0 289.5 0.0 -4,-6 0.0673 2 6.0 MINOR ENSMUSG00000031583 Wrn ENSMUST00000033991 ENSMUSP00000033991 TRANSLATION protein_coding - CCDS22229.1 5 1401.0 16.0 20.425 0.1 411.7 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000031583 Wrn ENSMUST00000209293 - NO_TRANSLATION retained_intron ENSMUSG00000031467 Agpat5 ENSMUST00000033847 ENSMUSP00000033847 TRANSLATION protein_coding - - 1 291.0 2.0 6.75 0.0 104.7 0.0 0,-3 0.0038 6 11.036 MINOR ENSMUSG00000031467 Agpat5 ENSMUST00000149565 ENSMUSP00000117025 TRANSLATION protein_coding - CCDS22126.1 1 365.0 2.0 7.75 19.0 120.8 0.0 0,-3 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000071113 Mboat4 ENSMUST00000095345 ENSMUSP00000092988 TRANSLATION protein_coding - CCDS52540.1 1 435.0 0.0 0.48 9.6 45.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037993 Dhx38 ENSMUST00000212667 - NO_TRANSLATION retained_intron ENSMUSG00000037993 Dhx38 ENSMUST00000042601 ENSMUSP00000047865 TRANSLATION protein_coding - CCDS22652.1 1 1228.0 9.0 15.2 11.4 208.5 0.0 -4,-5 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000031807 Pgls ENSMUST00000138742 ENSMUSP00000120113 TRANSLATION protein_coding start - 3 188.0 10.0 3.0 0.0 148.4 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000031807 Pgls ENSMUST00000123240 - NO_TRANSLATION retained_intron ENSMUSG00000031807 Pgls ENSMUST00000143441 ENSMUSP00000116524 TRANSLATION protein_coding - CCDS80895.1 3 174.0 6.0 4.33 0.0 165.3 0.0 -4,-6 0.0011 7 8.46 MINOR ENSMUSG00000031807 Pgls ENSMUST00000034264 ENSMUSP00000034264 TRANSLATION protein_coding - CCDS22400.1 1 257.0 11.0 5.33 13.0 235.4 0.0 -2,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000031807 Pgls ENSMUST00000127626 ENSMUSP00000122042 TRANSLATION nonsense_mediated_decay - - 1 215.0 11.0 4.33 0.0 217.7 0.0 -2,-5 0.0018 8 -2.0 MINOR ENSMUSG00000031698 Mylk3 ENSMUST00000138825 - NO_TRANSLATION retained_intron ENSMUSG00000031698 Mylk3 ENSMUST00000034133 ENSMUSP00000034133 TRANSLATION protein_coding - CCDS40422.1 1 795.0 18.0 8.25 0.0 241.6 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000031698 Mylk3 ENSMUST00000121972 ENSMUSP00000113960 TRANSLATION protein_coding - - 1 724.0 18.0 7.75 0.0 241.6 0.0 -4,-5 0.0578 4 12.998 ALTERNATIVE:2 ENSMUSG00000031698 Mylk3 ENSMUST00000122452 ENSMUSP00000113389 TRANSLATION protein_coding - CCDS80910.1 1 662.0 18.0 8.25 0.0 241.6 0.0 -4,-2 0.3146 5 14.0 ALTERNATIVE:2 ENSMUSG00000031698 Mylk3 ENSMUST00000137290 ENSMUSP00000123372 TRANSLATION protein_coding stop - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031561 Tenm3 ENSMUST00000110346 ENSMUSP00000105975 TRANSLATION protein_coding - - 1 495.0 0.0 2.206 0.0 93.5 3.0 -4,0 0.0014 8 1.0 MINOR ENSMUSG00000031561 Tenm3 ENSMUST00000211976 ENSMUSP00000148613 TRANSLATION protein_coding stop - 3 159.0 0.0 0.0 0.0 126.0 3.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031561 Tenm3 ENSMUST00000110343 ENSMUSP00000105972 TRANSLATION protein_coding stop - 2 57.0 0.0 0.0 0.0 70.5 3.0 -4,0 0.0007 - -2.0 MINOR ENSMUSG00000031561 Tenm3 ENSMUST00000145344 - NO_TRANSLATION retained_intron ENSMUSG00000031561 Tenm3 ENSMUST00000190840 ENSMUSP00000140141 TRANSLATION protein_coding - CCDS85538.1 1 2699.0 0.0 16.006 11.3 662.1 3.0 -4,-6 0.9608 33 10.076 ALTERNATIVE:1 ENSMUSG00000031561 Tenm3 ENSMUST00000110345 ENSMUSP00000105974 TRANSLATION protein_coding stop - 2 57.0 0.0 0.0 0.0 70.5 3.0 -4,0 0.0007 - -2.0 MINOR ENSMUSG00000031561 Tenm3 ENSMUST00000211812 ENSMUSP00000148666 TRANSLATION protein_coding stop - 5 169.0 0.0 0.0 0.0 299.7 0.0 -4,-6 0.0007 1 -2.0 MINOR ENSMUSG00000031561 Tenm3 ENSMUST00000033965 ENSMUSP00000033965 TRANSLATION protein_coding - CCDS22303.1 1 2715.0 0.0 16.468 11.1 662.1 3.0 -4,-6 1.0 34 10.943 PRINCIPAL:3 ENSMUSG00000031950 Gabarapl2 ENSMUST00000133628 - NO_TRANSLATION retained_intron ENSMUSG00000031950 Gabarapl2 ENSMUST00000130808 - NO_TRANSLATION retained_intron ENSMUSG00000031950 Gabarapl2 ENSMUST00000034428 ENSMUSP00000034428 TRANSLATION protein_coding - CCDS40480.1 1 117.0 0.0 2.75 33.9 168.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000031483 Erlin2 ENSMUST00000211043 ENSMUSP00000147616 TRANSLATION protein_coding stop - 3 159.0 0.0 4.41 0.0 54.7 0.0 0,-3 0.0022 3 -2.0 MINOR ENSMUSG00000031483 Erlin2 ENSMUST00000210445 - NO_TRANSLATION retained_intron ENSMUSG00000031483 Erlin2 ENSMUST00000209504 ENSMUSP00000148228 TRANSLATION protein_coding start/stop - 3 251.0 0.0 5.51 0.0 32.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000031483 Erlin2 ENSMUST00000209520 ENSMUSP00000147897 TRANSLATION protein_coding stop - 5 220.0 0.0 6.49 0.0 72.9 0.0 0,-3 0.0311 6 -2.0 MINOR ENSMUSG00000031483 Erlin2 ENSMUST00000033873 ENSMUSP00000033873 TRANSLATION protein_coding - CCDS22209.1 1 340.0 0.0 8.59 11.0 72.9 0.0 0,-3 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000031483 Erlin2 ENSMUST00000209563 ENSMUSP00000147310 TRANSLATION protein_coding stop - 3 185.0 0.0 5.24 2.2 67.1 0.0 0,-3 0.1078 5 -2.0 MINOR ENSMUSG00000031483 Erlin2 ENSMUST00000209795 ENSMUSP00000148192 TRANSLATION protein_coding stop - 5 150.0 0.0 4.41 0.0 47.5 0.0 0,-3 0.0018 3 -2.0 MINOR ENSMUSG00000031483 Erlin2 ENSMUST00000211233 ENSMUSP00000147642 TRANSLATION nonsense_mediated_decay start - 3 36.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031483 Erlin2 ENSMUST00000209976 ENSMUSP00000147516 TRANSLATION protein_coding stop - 3 85.0 0.0 2.316 0.0 26.0 0.0 0,-3 0.0018 1 -2.0 MINOR ENSMUSG00000058355 Abce1 ENSMUST00000209354 - NO_TRANSLATION retained_intron ENSMUSG00000058355 Abce1 ENSMUST00000080536 ENSMUSP00000079379 TRANSLATION protein_coding - CCDS22438.1 1 599.0 30.0 15.25 36.9 211.3 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000058355 Abce1 ENSMUST00000213842 - NO_TRANSLATION retained_intron ENSMUSG00000058355 Abce1 ENSMUST00000211509 - NO_TRANSLATION retained_intron ENSMUSG00000031621 Isx ENSMUST00000034034 ENSMUSP00000034034 TRANSLATION protein_coding - CCDS40391.1 1 240.0 0.0 2.05 0.4 82.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000031621 Isx ENSMUST00000174427 ENSMUSP00000134368 TRANSLATION protein_coding - CCDS80899.1 1 242.0 0.0 1.75 0.4 82.0 0.0 -4,-5 0.3642 - 7.124 ALTERNATIVE:2 ENSMUSG00000037738 Nek5 ENSMUST00000169834 ENSMUSP00000126705 TRANSLATION protein_coding - CCDS52518.1 1 614.0 19.0 5.75 0.0 228.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000037738 Nek5 ENSMUST00000210824 ENSMUSP00000147849 TRANSLATION nonsense_mediated_decay start - 1 237.0 9.0 4.6 0.0 169.0 0.0 -3,-5 0.0004 - -2.0 MINOR ENSMUSG00000037738 Nek5 ENSMUST00000209656 ENSMUSP00000148211 TRANSLATION protein_coding - CCDS85511.1 1 627.0 19.0 5.75 0.0 228.6 0.0 -4,-5 0.3656 - 14.0 ALTERNATIVE:2 ENSMUSG00000037738 Nek5 ENSMUST00000213644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033282 Rpgrip1l ENSMUST00000136198 - NO_TRANSLATION retained_intron ENSMUSG00000033282 Rpgrip1l ENSMUST00000209564 ENSMUSP00000147763 TRANSLATION protein_coding start - 2 77.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033282 Rpgrip1l ENSMUST00000211185 - NO_TRANSLATION retained_intron ENSMUSG00000033282 Rpgrip1l ENSMUST00000209616 ENSMUSP00000147300 TRANSLATION protein_coding start/stop - 3 253.0 0.0 1.0 0.0 165.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033282 Rpgrip1l ENSMUST00000139113 ENSMUSP00000118230 TRANSLATION nonsense_mediated_decay - - 1 211.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000033282 Rpgrip1l ENSMUST00000047783 ENSMUSP00000042702 TRANSLATION protein_coding - CCDS22520.1 1 1264.0 0.0 3.705 5.4 226.2 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000033282 Rpgrip1l ENSMUST00000132757 ENSMUSP00000120818 TRANSLATION protein_coding stop - 1 78.0 0.0 0.0 1.0 0.0 0.0 -4,-5 0.033 1 -2.0 MINOR ENSMUSG00000033282 Rpgrip1l ENSMUST00000210538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003848 Nob1 ENSMUST00000163973 - NO_TRANSLATION retained_intron ENSMUSG00000003848 Nob1 ENSMUST00000163757 - NO_TRANSLATION retained_intron ENSMUSG00000003848 Nob1 ENSMUST00000003946 ENSMUSP00000003946 TRANSLATION protein_coding - CCDS22649.1 1 403.0 4.0 6.4 2.4 295.6 0.0 -4,-5 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000003848 Nob1 ENSMUST00000170796 - NO_TRANSLATION retained_intron ENSMUSG00000003848 Nob1 ENSMUST00000076585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003848 Nob1 ENSMUST00000109273 - NO_TRANSLATION retained_intron ENSMUSG00000003848 Nob1 ENSMUST00000169311 ENSMUSP00000126868 TRANSLATION nonsense_mediated_decay - - 5 159.0 0.0 3.5 0.0 117.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003848 Nob1 ENSMUST00000165266 ENSMUSP00000129298 TRANSLATION nonsense_mediated_decay start - 3 62.0 0.0 1.75 0.0 58.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000078144 Capns2 ENSMUST00000104947 ENSMUSP00000100553 TRANSLATION protein_coding - CCDS52634.1 - 247.0 24.0 1.0 8.8 44.4 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000048478 Spata33 ENSMUST00000060133 ENSMUSP00000058002 TRANSLATION protein_coding - CCDS40510.1 1 132.0 0.0 1.6 2.1 131.0 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000048478 Spata33 ENSMUST00000212523 ENSMUSP00000148358 TRANSLATION protein_coding - - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000048478 Spata33 ENSMUST00000212760 ENSMUSP00000148766 TRANSLATION protein_coding - - - 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000048478 Spata33 ENSMUST00000212161 ENSMUSP00000148452 TRANSLATION protein_coding - - 2 157.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 2 0.0 MINOR ENSMUSG00000048478 Spata33 ENSMUST00000212346 ENSMUSP00000148519 TRANSLATION protein_coding - - 2 115.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 2 0.0 MINOR ENSMUSG00000048478 Spata33 ENSMUST00000212637 ENSMUSP00000148403 TRANSLATION protein_coding - - 2 103.0 0.0 1.6 1.0 131.0 0.0 -4,-5 0.2605 4 8.0 ALTERNATIVE:2 ENSMUSG00000048478 Spata33 ENSMUST00000212271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048478 Spata33 ENSMUST00000212892 ENSMUSP00000148396 TRANSLATION protein_coding - - 1 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000096014 Sox1 ENSMUST00000180353 ENSMUSP00000137203 TRANSLATION protein_coding - CCDS57605.1 - 391.0 0.0 0.4 3.5 202.8 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031827 Cotl1 ENSMUST00000211873 ENSMUSP00000148448 TRANSLATION protein_coding - - 5 119.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 4 1.998 MINOR ENSMUSG00000031827 Cotl1 ENSMUST00000034285 ENSMUSP00000034285 TRANSLATION protein_coding - CCDS22712.1 1 142.0 0.0 4.25 34.3 59.1 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000031827 Cotl1 ENSMUST00000212676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095026 Gm3336 ENSMUST00000213065 ENSMUSP00000148772 TRANSLATION protein_coding - - 1 95.0 0.0 0.0 0.0 0.0 1.0 1,-3 0.5936 1 0.0 PRINCIPAL:4 ENSMUSG00000095026 Gm3336 ENSMUST00000179347 ENSMUSP00000136399 TRANSLATION protein_coding - CCDS57624.1 5 198.0 0.0 0.0 0.0 0.0 1.0 3,-2 0.3882 1 0.0 ALTERNATIVE:2 ENSMUSG00000005540 Fcer2a ENSMUST00000207635 ENSMUSP00000146689 TRANSLATION protein_coding stop - 1 300.0 14.0 8.065 0.0 90.3 0.0 -2,-5 0.0645 5 -2.0 MINOR ENSMUSG00000005540 Fcer2a ENSMUST00000208145 ENSMUSP00000146647 TRANSLATION protein_coding - CCDS85491.1 1 330.0 14.0 7.9 0.4 90.3 2.0 -4,-7 0.5173 5 13.67 ALTERNATIVE:2 ENSMUSG00000005540 Fcer2a ENSMUST00000207327 - NO_TRANSLATION retained_intron ENSMUSG00000005540 Fcer2a ENSMUST00000207463 ENSMUSP00000147052 TRANSLATION protein_coding stop - 1 287.0 14.0 7.665 0.0 90.3 0.0 -4,-5 0.0253 5 -2.0 MINOR ENSMUSG00000005540 Fcer2a ENSMUST00000005678 ENSMUSP00000005678 TRANSLATION protein_coding - CCDS22071.1 1 331.0 14.0 8.065 0.1 90.3 2.0 -4,-6 1.0 5 14.0 PRINCIPAL:2 ENSMUSG00000005540 Fcer2a ENSMUST00000208438 ENSMUSP00000146822 TRANSLATION protein_coding - CCDS85493.1 1 309.0 14.0 7.15 0.0 90.3 2.0 -4,-7 0.1747 4 12.17 MINOR ENSMUSG00000005540 Fcer2a ENSMUST00000208492 ENSMUSP00000146568 TRANSLATION protein_coding - CCDS85494.1 1 330.0 14.0 7.9 0.3 90.3 2.0 -4,-7 0.5173 5 13.67 ALTERNATIVE:2 ENSMUSG00000005540 Fcer2a ENSMUST00000208603 ENSMUSP00000146380 TRANSLATION protein_coding - CCDS85492.1 1 309.0 14.0 7.15 0.0 90.3 2.0 -4,-7 0.1747 3 12.17 MINOR ENSMUSG00000001670 Tat ENSMUST00000001720 ENSMUSP00000001720 TRANSLATION protein_coding - CCDS22658.1 1 454.0 13.0 9.8 23.7 333.1 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000001670 Tat ENSMUST00000143741 ENSMUSP00000119061 TRANSLATION protein_coding stop - 3 233.0 7.0 4.55 0.0 204.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031513 Leprotl1 ENSMUST00000033910 ENSMUSP00000033910 TRANSLATION protein_coding - CCDS22239.1 1 131.0 0.0 0.0 35.7 134.0 0.0 1,-3 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000025521 Tmem192 ENSMUST00000026595 ENSMUSP00000026595 TRANSLATION protein_coding - CCDS22329.1 1 266.0 0.0 0.0 10.9 274.5 7.0 -4,-6 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000025521 Tmem192 ENSMUST00000211405 ENSMUSP00000147585 TRANSLATION nonsense_mediated_decay start - 2 108.0 0.0 0.0 0.0 62.3 5.0 -3,-5 0.0038 - -2.0 MINOR ENSMUSG00000025521 Tmem192 ENSMUST00000209923 ENSMUSP00000148175 TRANSLATION nonsense_mediated_decay - - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025521 Tmem192 ENSMUST00000209852 ENSMUSP00000147788 TRANSLATION protein_coding - - 1 258.0 0.0 0.0 0.0 220.5 7.0 -4,-6 0.0165 2 2.76 MINOR ENSMUSG00000025521 Tmem192 ENSMUST00000079896 ENSMUSP00000078819 TRANSLATION protein_coding - CCDS52559.1 1 221.0 0.0 0.0 3.2 209.3 2.0 -4,-6 0.0852 3 2.754 MINOR ENSMUSG00000031967 Afg3l1 ENSMUST00000001520 ENSMUSP00000001520 TRANSLATION protein_coding - CCDS22760.1 1 789.0 16.0 10.75 1.6 427.4 2.0 -1,2 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000031967 Afg3l1 ENSMUST00000098320 ENSMUSP00000095924 TRANSLATION nonsense_mediated_decay - - 1 584.0 13.0 6.08 0.0 175.9 2.0 -1,2 0.0028 7 -2.0 MINOR ENSMUSG00000031967 Afg3l1 ENSMUST00000152469 - NO_TRANSLATION retained_intron ENSMUSG00000031967 Afg3l1 ENSMUST00000146795 - NO_TRANSLATION retained_intron ENSMUSG00000031967 Afg3l1 ENSMUST00000150872 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031967 Afg3l1 ENSMUST00000133606 - NO_TRANSLATION retained_intron ENSMUSG00000037363 Letm2 ENSMUST00000210914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037363 Letm2 ENSMUST00000209734 - NO_TRANSLATION retained_intron ENSMUSG00000037363 Letm2 ENSMUST00000209982 - NO_TRANSLATION retained_intron ENSMUSG00000037363 Letm2 ENSMUST00000211422 ENSMUSP00000147507 TRANSLATION protein_coding - - 5 196.0 0.0 0.0 0.0 22.9 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000037363 Letm2 ENSMUST00000210234 ENSMUSP00000148232 TRANSLATION protein_coding - - 5 221.0 0.0 0.698 0.0 136.1 1.0 -4,-2 0.0 - 1.614 MINOR ENSMUSG00000037363 Letm2 ENSMUST00000210810 ENSMUSP00000148035 TRANSLATION protein_coding - - 1 288.0 0.0 0.698 0.0 172.9 1.0 -4,-2 0.001 1 1.614 MINOR ENSMUSG00000037363 Letm2 ENSMUST00000079160 ENSMUSP00000078160 TRANSLATION protein_coding - CCDS52527.1 1 480.0 0.0 2.598 1.1 337.2 1.0 -4,-2 1.0 6 12.091 PRINCIPAL:1 ENSMUSG00000037363 Letm2 ENSMUST00000210321 - NO_TRANSLATION retained_intron ENSMUSG00000037363 Letm2 ENSMUST00000211001 - NO_TRANSLATION retained_intron ENSMUSG00000037363 Letm2 ENSMUST00000210616 ENSMUSP00000147648 TRANSLATION protein_coding - - 1 171.0 0.0 0.198 2.1 39.6 0.0 -4,-2 0.278 - 1.456 MINOR ENSMUSG00000037363 Letm2 ENSMUST00000211133 - NO_TRANSLATION retained_intron ENSMUSG00000037363 Letm2 ENSMUST00000209539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037363 Letm2 ENSMUST00000210221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043068 Fam89a ENSMUST00000055257 ENSMUSP00000058156 TRANSLATION protein_coding - CCDS40516.1 1 175.0 0.0 0.8 3.3 0.0 0.0 -4,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000002393 Nr2f6 ENSMUST00000137058 ENSMUSP00000121648 TRANSLATION protein_coding start/stop - 3 270.0 3.0 1.882 0.0 92.7 0.0 -3,1 0.0005 4 -2.0 MINOR ENSMUSG00000002393 Nr2f6 ENSMUST00000156270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002393 Nr2f6 ENSMUST00000155463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002393 Nr2f6 ENSMUST00000132630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002393 Nr2f6 ENSMUST00000137734 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002393 Nr2f6 ENSMUST00000124732 ENSMUSP00000116498 TRANSLATION protein_coding start/stop - 3 254.0 3.0 2.5 0.0 113.2 0.0 -4,-1 0.0 6 -2.0 MINOR ENSMUSG00000002393 Nr2f6 ENSMUST00000127443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002393 Nr2f6 ENSMUST00000002466 ENSMUSP00000002466 TRANSLATION protein_coding - CCDS22392.1 1 390.0 8.0 4.4 2.6 235.4 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000002396 Ocel1 ENSMUST00000110051 ENSMUSP00000105678 TRANSLATION protein_coding - CCDS80892.1 1 135.0 0.0 0.0 0.1 0.0 0.0 -4,-1 0.0483 - 0.0 MINOR ENSMUSG00000002396 Ocel1 ENSMUST00000110052 ENSMUSP00000105679 TRANSLATION protein_coding - - 1 140.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - 0.0 MINOR ENSMUSG00000002396 Ocel1 ENSMUST00000002469 ENSMUSP00000002469 TRANSLATION protein_coding - CCDS22391.1 1 219.0 0.0 2.75 0.1 89.1 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000002396 Ocel1 ENSMUST00000126049 - NO_TRANSLATION retained_intron ENSMUSG00000055368 Slc6a2 ENSMUST00000072939 ENSMUSP00000072709 TRANSLATION protein_coding - CCDS22525.1 1 617.0 8.0 12.68 8.0 796.8 10.0 -4,-6 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000055368 Slc6a2 ENSMUST00000165470 ENSMUSP00000129869 TRANSLATION protein_coding - CCDS22525.1 1 617.0 8.0 12.68 8.0 796.8 10.0 -4,-6 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000051978 Erich1 ENSMUST00000110813 ENSMUSP00000106436 TRANSLATION protein_coding - CCDS40238.1 1 332.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.8721 5 0.0 PRINCIPAL:1 ENSMUSG00000051978 Erich1 ENSMUST00000211242 ENSMUSP00000147614 TRANSLATION protein_coding stop - 3 135.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0282 3 -2.0 MINOR ENSMUSG00000031546 Gins4 ENSMUST00000033950 ENSMUSP00000033950 TRANSLATION protein_coding - CCDS22190.1 1 223.0 0.0 6.35 19.6 93.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000036990 Otud4 ENSMUST00000173868 - NO_TRANSLATION retained_intron ENSMUSG00000036990 Otud4 ENSMUST00000173286 ENSMUSP00000134097 TRANSLATION protein_coding - CCDS57626.1 1 1106.0 0.0 1.90375 1.4 54.8 0.0 -4,-5 1.0 17 7.0 PRINCIPAL:4 ENSMUSG00000036990 Otud4 ENSMUST00000173300 - NO_TRANSLATION retained_intron ENSMUSG00000036990 Otud4 ENSMUST00000173078 ENSMUSP00000133939 TRANSLATION protein_coding - CCDS57625.1 1 1107.0 0.0 1.90375 0.4 54.8 0.0 -4,-5 0.9948 17 6.0 ALTERNATIVE:2 ENSMUSG00000036990 Otud4 ENSMUST00000174485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036990 Otud4 ENSMUST00000172614 - NO_TRANSLATION retained_intron ENSMUSG00000036306 Lzts1 ENSMUST00000185176 ENSMUSP00000139117 TRANSLATION protein_coding - CCDS22345.1 5 599.0 0.0 0.0 5.6 213.8 0.0 -4,-2 1.0 12 8.0 PRINCIPAL:1 ENSMUSG00000036306 Lzts1 ENSMUST00000037049 ENSMUSP00000039397 TRANSLATION protein_coding - CCDS22345.1 1 599.0 0.0 0.0 5.6 213.8 0.0 -4,-2 1.0 12 8.0 PRINCIPAL:1 ENSMUSG00000036306 Lzts1 ENSMUST00000209353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036306 Lzts1 ENSMUST00000181890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036306 Lzts1 ENSMUST00000184961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052794 1700030K09Rik ENSMUST00000139130 - NO_TRANSLATION retained_intron ENSMUSG00000052794 1700030K09Rik ENSMUST00000064853 ENSMUSP00000063244 TRANSLATION protein_coding - CCDS22414.1 1 641.0 0.0 0.0 0.0 228.3 0.0 -4,-2 1.0 4 0.0 PRINCIPAL:2 ENSMUSG00000052794 1700030K09Rik ENSMUST00000121902 ENSMUSP00000113279 TRANSLATION protein_coding - - 5 607.0 0.0 0.0 0.0 228.3 0.0 -4,-2 0.1217 4 0.0 ALTERNATIVE:2 ENSMUSG00000074194 Zfp791 ENSMUST00000098550 ENSMUSP00000096150 TRANSLATION protein_coding - CCDS40419.1 1 528.0 60.0 1.0 0.0 302.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000074194 Zfp791 ENSMUST00000211109 ENSMUSP00000147335 TRANSLATION protein_coding - CCDS40419.1 1 528.0 60.0 1.0 0.0 302.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000070044 Fam149a ENSMUST00000135912 ENSMUSP00000120196 TRANSLATION protein_coding start - 1 744.0 0.0 0.0 0.0 94.5 0.0 -3,-4 0.1208 - -2.0 MINOR ENSMUSG00000070044 Fam149a ENSMUST00000155230 ENSMUSP00000114612 TRANSLATION protein_coding start - 1 706.0 0.0 0.0 0.0 94.5 0.0 -4,-6 0.1023 - -2.0 MINOR ENSMUSG00000070044 Fam149a ENSMUST00000093526 ENSMUSP00000091245 TRANSLATION protein_coding - CCDS22277.1 1 787.0 0.0 0.0 0.1 94.5 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031478 Nek3 ENSMUST00000178324 ENSMUSP00000136876 TRANSLATION protein_coding - CCDS52519.1 1 511.0 16.0 6.5 0.3 223.4 0.0 -4,-7 0.5281 8 14.0 ALTERNATIVE:2 ENSMUSG00000031478 Nek3 ENSMUST00000110730 ENSMUSP00000106358 TRANSLATION protein_coding - CCDS52519.1 5 511.0 16.0 6.5 0.3 223.4 0.0 -4,-7 0.5281 8 14.0 ALTERNATIVE:2 ENSMUSG00000031478 Nek3 ENSMUST00000151371 - NO_TRANSLATION retained_intron ENSMUSG00000031478 Nek3 ENSMUST00000033865 ENSMUSP00000033865 TRANSLATION protein_coding - CCDS22169.1 1 509.0 16.0 6.5 0.3 223.4 0.0 -4,-7 1.0 8 14.0 PRINCIPAL:2 ENSMUSG00000031881 Cdh16 ENSMUST00000212324 ENSMUSP00000148363 TRANSLATION protein_coding stop - 5 141.0 5.0 1.8 0.0 0.0 0.0 1,-2 0.0026 - -2.0 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000213033 ENSMUSP00000148701 TRANSLATION protein_coding start - 5 179.0 3.0 0.966 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000211903 ENSMUSP00000148478 TRANSLATION protein_coding - CCDS22583.1 1 830.0 36.0 11.6 9.1 172.1 2.0 1,-2 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000031881 Cdh16 ENSMUST00000212420 ENSMUSP00000148711 TRANSLATION protein_coding start - 5 142.0 6.0 1.5 0.0 39.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000212447 ENSMUSP00000148835 TRANSLATION protein_coding stop - 5 223.0 11.0 3.7 0.0 31.0 0.0 1,-2 0.0009 3 -2.0 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000163783 ENSMUSP00000129663 TRANSLATION protein_coding - CCDS85594.1 1 800.0 34.0 11.0 0.3 172.1 2.0 -1,-3 0.1634 11 15.468 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000211849 ENSMUSP00000148269 TRANSLATION protein_coding start - 3 75.0 0.0 1.1 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000211889 ENSMUSP00000148491 TRANSLATION protein_coding start - 5 93.0 0.0 1.1 0.0 0.0 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000212689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031881 Cdh16 ENSMUST00000212748 ENSMUSP00000148809 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 0.2 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000212318 ENSMUSP00000148337 TRANSLATION protein_coding start - 5 98.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000212662 ENSMUSP00000148793 TRANSLATION protein_coding stop - 3 163.0 11.0 3.0 0.0 31.0 0.0 1,-2 0.0009 3 -2.0 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000212882 ENSMUSP00000148726 TRANSLATION protein_coding - CCDS85595.1 1 815.0 36.0 11.6 0.0 172.1 0.0 1,-2 0.3537 9 18.0 MINOR ENSMUSG00000031881 Cdh16 ENSMUST00000212045 ENSMUSP00000148602 TRANSLATION protein_coding start - 3 149.0 0.0 1.7 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000069998 Or2z8 ENSMUST00000093434 ENSMUSP00000132724 TRANSLATION protein_coding - CCDS52592.1 - 314.0 0.0 1.0 8.9 193.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069998 Or2z8 ENSMUST00000215324 ENSMUSP00000149288 TRANSLATION protein_coding - CCDS52592.1 5 314.0 0.0 1.0 8.9 193.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000006567 Atp7b ENSMUST00000006742 ENSMUSP00000006742 TRANSLATION protein_coding - CCDS22168.1 1 1462.0 20.0 14.954 0.0 376.1 6.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000006567 Atp7b ENSMUST00000110738 ENSMUSP00000106366 TRANSLATION protein_coding - - 5 1347.0 20.0 14.354 1.0 376.1 6.0 -4,-6 0.2684 13 16.8 MINOR ENSMUSG00000065987 Cd209b ENSMUST00000111014 ENSMUSP00000106643 TRANSLATION nonsense_mediated_decay - - 1 195.0 0.0 2.3 0.0 0.0 1.0 -4,-5 0.0043 5 -2.0 MINOR ENSMUSG00000065987 Cd209b ENSMUST00000188386 ENSMUSP00000140695 TRANSLATION protein_coding - CCDS72089.1 1 316.0 16.0 4.929 0.0 72.1 0.0 -4,-5 0.1603 9 16.326 MINOR ENSMUSG00000065987 Cd209b ENSMUST00000171635 ENSMUSP00000126070 TRANSLATION protein_coding - CCDS22076.1 1 295.0 16.0 4.83 0.0 75.5 0.0 -4,-5 0.0577 10 16.398 MINOR ENSMUSG00000065987 Cd209b ENSMUST00000084086 ENSMUSP00000081104 TRANSLATION protein_coding - CCDS22077.1 1 325.0 16.0 5.63 0.3 75.5 1.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000074444 Defa30 ENSMUST00000098898 ENSMUSP00000096497 TRANSLATION protein_coding - CCDS52504.1 1 93.0 0.0 1.0 0.1 120.2 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031831 Dnaaf1 ENSMUST00000093100 ENSMUSP00000090790 TRANSLATION protein_coding - CCDS22709.1 1 634.0 0.0 5.0 0.1 0.0 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000097919 Gm27021 ENSMUST00000181333 ENSMUSP00000137785 TRANSLATION protein_coding,RT - CCDS85621.1 4 156.0 0.0 0.264 0.0 218.7 0.0 -4,-7 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000024266 Adad2 ENSMUST00000098361 ENSMUSP00000095964 TRANSLATION protein_coding - CCDS52683.1 1 561.0 16.0 1.782 0.4 262.2 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000061974 Cldn24 ENSMUST00000079639 ENSMUSP00000078584 TRANSLATION protein_coding - CCDS52549.1 - 220.0 0.0 1.0 15.8 79.0 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000118541 Nrg1 ENSMUST00000239000 ENSMUSP00000158957 TRANSLATION protein_coding - - - 61.0 0.0 0.5 0.0 0.0 0.0 0,-4 0.5799 - 6.0 PRINCIPAL:1 ENSMUSG00000037070 Rbmxl1 ENSMUST00000049245 ENSMUSP00000048153 TRANSLATION protein_coding - CCDS22430.1 1 388.0 0.0 0.4 1.5 160.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000037070 Rbmxl1 ENSMUST00000211719 ENSMUSP00000147384 TRANSLATION protein_coding - CCDS22430.1 1 388.0 0.0 0.4 1.5 160.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031584 Gsr ENSMUST00000033992 ENSMUSP00000033992 TRANSLATION protein_coding - CCDS22235.1 1 500.0 63.0 11.33 0.3 194.4 0.0 -3,1 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000031584 Gsr ENSMUST00000154745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031584 Gsr ENSMUST00000149528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015568 Lpl ENSMUST00000015712 ENSMUSP00000015712 TRANSLATION protein_coding - CCDS40357.1 1 474.0 7.0 8.0 10.6 528.5 0.0 2,-2 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000015568 Lpl ENSMUST00000101463 - NO_TRANSLATION retained_intron ENSMUSG00000015568 Lpl ENSMUST00000213071 - NO_TRANSLATION retained_intron ENSMUSG00000015568 Lpl ENSMUST00000168401 ENSMUSP00000132259 TRANSLATION nonsense_mediated_decay - CCDS40357.1 1 474.0 7.0 8.0 10.6 528.5 0.0 2,-2 1.0 - -2.0 MINOR ENSMUSG00000015568 Lpl ENSMUST00000169749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033633 Clec18a ENSMUST00000188466 ENSMUSP00000141073 TRANSLATION protein_coding - - 5 473.0 7.0 5.766 0.1 129.4 0.0 -1,1 0.1376 - 13.802 ALTERNATIVE:2 ENSMUSG00000033633 Clec18a ENSMUST00000191030 ENSMUSP00000139569 TRANSLATION nonsense_mediated_decay - - 2 504.0 7.0 5.766 0.0 129.4 0.0 -4,-5 0.0367 - -2.0 MINOR ENSMUSG00000033633 Clec18a ENSMUST00000191469 ENSMUSP00000139515 TRANSLATION nonsense_mediated_decay - - 2 534.0 7.0 5.866 0.0 129.4 0.0 -4,-5 0.7383 - -2.0 MINOR ENSMUSG00000033633 Clec18a ENSMUST00000039597 ENSMUSP00000046546 TRANSLATION protein_coding - - 5 534.0 7.0 5.866 0.0 129.4 0.0 -4,-5 0.7383 - 14.0 PRINCIPAL:2 ENSMUSG00000033633 Clec18a ENSMUST00000190222 ENSMUSP00000139634 TRANSLATION nonsense_mediated_decay - - 1 425.0 0.0 4.09 0.0 85.8 0.0 -1,1 0.0008 - -2.0 MINOR ENSMUSG00000033633 Clec18a ENSMUST00000186384 ENSMUSP00000140703 TRANSLATION nonsense_mediated_decay - - 5 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033633 Clec18a ENSMUST00000190778 ENSMUSP00000139789 TRANSLATION nonsense_mediated_decay - - 2 139.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031887 Tradd ENSMUST00000144762 ENSMUSP00000119174 TRANSLATION nonsense_mediated_decay - - 5 64.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031887 Tradd ENSMUST00000034359 ENSMUSP00000034359 TRANSLATION protein_coding - CCDS22594.1 1 310.0 0.0 3.7 8.3 185.6 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000031887 Tradd ENSMUST00000136239 - NO_TRANSLATION retained_intron ENSMUSG00000031887 Tradd ENSMUST00000147670 - NO_TRANSLATION retained_intron ENSMUSG00000031891 Hsd11b2 ENSMUST00000034363 ENSMUSP00000034363 TRANSLATION protein_coding - CCDS40460.1 1 386.0 27.0 5.0 0.0 153.9 0.0 0,-4 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000038193 Hand2 ENSMUST00000040104 ENSMUSP00000044983 TRANSLATION protein_coding - CCDS22315.1 1 217.0 0.0 0.5 19.6 65.9 0.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000002908 Kcnn1 ENSMUST00000110078 ENSMUSP00000105705 TRANSLATION protein_coding - CCDS52578.1 1 538.0 0.0 8.33 6.8 328.3 6.0 -4,-5 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000002908 Kcnn1 ENSMUST00000212611 ENSMUSP00000148544 TRANSLATION protein_coding - CCDS52578.1 1 538.0 0.0 8.33 6.8 328.3 6.0 -4,-5 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000002908 Kcnn1 ENSMUST00000212086 ENSMUSP00000148615 TRANSLATION protein_coding - - 1 581.0 0.0 8.33 0.0 328.3 6.0 -4,-6 0.0717 - 8.0 MINOR ENSMUSG00000002908 Kcnn1 ENSMUST00000212414 ENSMUSP00000148760 TRANSLATION protein_coding stop - 1 132.0 0.0 0.5 0.0 45.7 2.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002908 Kcnn1 ENSMUST00000212509 ENSMUSP00000148705 TRANSLATION protein_coding - - 5 535.0 0.0 8.33 5.7 335.8 6.0 -4,-5 0.8048 - 9.62 ALTERNATIVE:1 ENSMUSG00000002908 Kcnn1 ENSMUST00000212084 ENSMUSP00000148487 TRANSLATION protein_coding start/stop - 3 113.0 0.0 2.83 0.0 136.6 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000002908 Kcnn1 ENSMUST00000212243 ENSMUSP00000148482 TRANSLATION nonsense_mediated_decay start - 3 157.0 0.0 4.0 0.0 121.4 4.0 2,-3 0.0036 - -2.0 MINOR ENSMUSG00000031979 Cog2 ENSMUST00000108803 - NO_TRANSLATION retained_intron ENSMUSG00000031979 Cog2 ENSMUST00000176279 ENSMUSP00000135022 TRANSLATION nonsense_mediated_decay - - 5 101.0 0.0 0.0 0.0 121.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031979 Cog2 ENSMUST00000176159 ENSMUSP00000135600 TRANSLATION nonsense_mediated_decay - - 3 89.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031979 Cog2 ENSMUST00000129977 - NO_TRANSLATION retained_intron ENSMUSG00000031979 Cog2 ENSMUST00000034460 ENSMUSP00000034460 TRANSLATION protein_coding - CCDS22771.1 1 731.0 0.0 0.0 10.5 286.2 0.0 -4,-5 1.0 19 9.0 PRINCIPAL:1 ENSMUSG00000094662 Defa36 ENSMUST00000095424 ENSMUSP00000093074 TRANSLATION protein_coding - CCDS57612.1 1 93.0 0.0 1.0 0.1 109.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000061845 Defa35 ENSMUST00000078121 ENSMUSP00000077259 TRANSLATION protein_coding - CCDS52501.1 1 93.0 0.0 1.0 0.1 112.8 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074454 Defb33 ENSMUST00000098908 ENSMUSP00000096507 TRANSLATION protein_coding - CCDS57609.1 2 62.0 0.0 1.6 0.8 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000003033 Ap1m1 ENSMUST00000212940 ENSMUSP00000148799 TRANSLATION nonsense_mediated_decay - - 5 63.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003033 Ap1m1 ENSMUST00000212708 ENSMUSP00000148424 TRANSLATION nonsense_mediated_decay - - 3 55.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003033 Ap1m1 ENSMUST00000151546 - NO_TRANSLATION retained_intron ENSMUSG00000003033 Ap1m1 ENSMUST00000156735 - NO_TRANSLATION retained_intron ENSMUSG00000003033 Ap1m1 ENSMUST00000145213 ENSMUSP00000138319 TRANSLATION protein_coding stop - 3 107.0 0.0 3.41 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000003033 Ap1m1 ENSMUST00000126885 ENSMUSP00000120435 TRANSLATION protein_coding stop - 5 181.0 0.0 5.16 0.0 58.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000003033 Ap1m1 ENSMUST00000003117 ENSMUSP00000003117 TRANSLATION protein_coding - CCDS22411.1 1 423.0 0.0 11.32 34.2 329.9 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000003033 Ap1m1 ENSMUST00000212841 ENSMUSP00000148530 TRANSLATION protein_coding stop - 2 132.0 0.0 3.6625 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000004677 Myo9b ENSMUST00000240722 ENSMUSP00000159515 TRANSLATION protein_coding - - - 1993.0 17.0 14.69 0.0 1013.0 0.0 -4,-1 1.0 34 14.0 PRINCIPAL:3 ENSMUSG00000004677 Myo9b ENSMUST00000212412 ENSMUSP00000148528 TRANSLATION protein_coding - - 5 1991.0 17.0 14.69 0.0 1011.4 0.0 -4,-1 0.8861 32 14.0 ALTERNATIVE:2 ENSMUSG00000004677 Myo9b ENSMUST00000170242 ENSMUSP00000129220 TRANSLATION protein_coding - CCDS52580.1 5 2128.0 17.0 14.69 0.0 1011.4 0.0 -4,-1 0.6633 35 14.0 ALTERNATIVE:2 ENSMUSG00000004677 Myo9b ENSMUST00000168839 ENSMUSP00000131635 TRANSLATION protein_coding - CCDS52581.1 5 1975.0 17.0 14.69 0.0 1011.4 0.0 -4,-1 0.7839 31 14.0 ALTERNATIVE:2 ENSMUSG00000031750 Il34 ENSMUST00000137362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031750 Il34 ENSMUST00000148732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031750 Il34 ENSMUST00000154803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031750 Il34 ENSMUST00000150680 ENSMUSP00000114398 TRANSLATION protein_coding - CCDS52670.1 1 219.0 0.0 2.95 0.0 175.2 0.0 4,-1 0.0287 2 4.464 MINOR ENSMUSG00000031750 Il34 ENSMUST00000076846 ENSMUSP00000076120 TRANSLATION protein_coding - CCDS52669.1 1 235.0 0.0 4.35 3.7 254.1 0.0 4,-1 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000031834 Pik3r2 ENSMUST00000142370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031834 Pik3r2 ENSMUST00000143785 ENSMUSP00000122065 TRANSLATION protein_coding start - 3 71.0 0.0 1.5 0.0 51.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031834 Pik3r2 ENSMUST00000154685 ENSMUSP00000121463 TRANSLATION protein_coding start/stop - 1 84.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031834 Pik3r2 ENSMUST00000146707 - NO_TRANSLATION retained_intron ENSMUSG00000031834 Pik3r2 ENSMUST00000034296 ENSMUSP00000034296 TRANSLATION protein_coding - CCDS22381.1 1 722.0 0.0 12.64 0.3 384.6 0.0 -4,-7 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000031834 Pik3r2 ENSMUST00000152545 - NO_TRANSLATION retained_intron ENSMUSG00000065956 Defa37 ENSMUST00000084040 ENSMUSP00000081053 TRANSLATION protein_coding - CCDS52510.1 1 93.0 0.0 1.0 0.1 109.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079168 Cd209g ENSMUST00000207281 - NO_TRANSLATION retained_intron ENSMUSG00000079168 Cd209g ENSMUST00000130372 ENSMUSP00000116397 TRANSLATION protein_coding - CCDS57602.1 1 194.0 16.0 4.53 0.0 75.6 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000006517 Mvd ENSMUST00000006692 ENSMUSP00000006692 TRANSLATION protein_coding - CCDS22738.1 1 401.0 10.0 8.8 14.5 25.7 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000006517 Mvd ENSMUST00000211883 ENSMUSP00000148539 TRANSLATION nonsense_mediated_decay - - 1 78.0 0.0 1.7 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000087687 Pet100 ENSMUST00000208950 ENSMUSP00000146433 TRANSLATION nonsense_mediated_decay - CCDS57601.1 3 76.0 0.0 1.764 23.5 96.8 0.0 -3,-5 1.0 - -2.0 MINOR ENSMUSG00000087687 Pet100 ENSMUST00000208185 - NO_TRANSLATION retained_intron ENSMUSG00000087687 Pet100 ENSMUST00000207389 ENSMUSP00000146942 TRANSLATION protein_coding - - 2 67.0 0.0 1.764 0.0 79.6 0.0 -4,-5 0.0143 - 10.932 MINOR ENSMUSG00000087687 Pet100 ENSMUST00000156380 ENSMUSP00000137626 TRANSLATION protein_coding - CCDS57601.1 1 76.0 0.0 1.764 23.5 96.8 0.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000087687 Pet100 ENSMUST00000207428 ENSMUSP00000146950 TRANSLATION nonsense_mediated_decay start - 5 72.0 0.0 1.764 0.0 91.2 0.0 -3,-5 0.0325 - -2.0 MINOR ENSMUSG00000087687 Pet100 ENSMUST00000207257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031754 Nudt21 ENSMUST00000212981 ENSMUSP00000148597 TRANSLATION protein_coding - - 3 218.0 0.0 5.58 0.0 265.1 0.0 -4,0 0.0937 5 9.672 MINOR ENSMUSG00000031754 Nudt21 ENSMUST00000212622 ENSMUSP00000148485 TRANSLATION protein_coding start - 3 169.0 0.0 3.6 0.0 174.0 0.0 -4,-7 0.0003 5 -2.0 MINOR ENSMUSG00000031754 Nudt21 ENSMUST00000212911 ENSMUSP00000148500 TRANSLATION protein_coding start - 3 129.0 0.0 2.75 0.0 141.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031754 Nudt21 ENSMUST00000034204 ENSMUSP00000034204 TRANSLATION protein_coding - CCDS40433.1 1 227.0 0.0 6.58 35.8 270.6 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000036437 Npy1r ENSMUST00000039303 ENSMUSP00000045530 TRANSLATION protein_coding - CCDS22336.1 1 382.0 0.0 2.0 19.8 181.9 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036437 Npy1r ENSMUST00000212588 ENSMUSP00000148417 TRANSLATION protein_coding - CCDS22336.1 5 382.0 0.0 2.0 19.8 181.9 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000035785 Cmtm2b ENSMUST00000041973 ENSMUSP00000043127 TRANSLATION protein_coding - CCDS22576.1 1 210.0 0.0 2.6 0.0 0.0 1.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000035785 Cmtm2b ENSMUST00000212912 ENSMUSP00000148496 TRANSLATION protein_coding start - 3 126.0 0.0 1.6 0.0 0.0 1.0 -1,-5 0.0292 - -2.0 MINOR ENSMUSG00000014633 Cmc2 ENSMUST00000155260 - NO_TRANSLATION retained_intron ENSMUSG00000014633 Cmc2 ENSMUST00000134356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014633 Cmc2 ENSMUST00000078589 ENSMUSP00000077663 TRANSLATION protein_coding - - 2 55.0 0.0 1.5 0.0 23.5 0.0 -4,-5 0.0105 3 6.018 MINOR ENSMUSG00000014633 Cmc2 ENSMUST00000128304 ENSMUSP00000120919 TRANSLATION protein_coding - - 5 99.0 0.0 0.75 0.0 25.7 0.0 -4,-5 0.0003 1 4.2 MINOR ENSMUSG00000014633 Cmc2 ENSMUST00000148235 ENSMUSP00000120966 TRANSLATION protein_coding - CCDS40489.1 1 79.0 0.0 2.25 30.9 70.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000014633 Cmc2 ENSMUST00000131616 ENSMUSP00000121322 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 0.75 0.0 25.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000014633 Cmc2 ENSMUST00000150128 ENSMUSP00000120255 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.75 0.0 22.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041308 Sntb2 ENSMUST00000047425 ENSMUSP00000037324 TRANSLATION protein_coding - - 1 531.0 0.0 1.4 0.0 69.1 0.0 -4,-7 0.7978 14 8.0 ALTERNATIVE:2 ENSMUSG00000041308 Sntb2 ENSMUST00000212298 - NO_TRANSLATION retained_intron ENSMUSG00000041308 Sntb2 ENSMUST00000212524 ENSMUSP00000148684 TRANSLATION protein_coding - CCDS22642.1 1 520.0 0.0 1.4 0.4 69.1 0.0 -4,-7 0.6168 16 8.0 PRINCIPAL:3 ENSMUSG00000089704 Galnt2 ENSMUST00000147911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089704 Galnt2 ENSMUST00000034458 ENSMUSP00000034458 TRANSLATION protein_coding - CCDS22769.1 1 570.0 21.0 13.0 19.7 179.6 0.0 1,-4 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000089704 Galnt2 ENSMUST00000142547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089704 Galnt2 ENSMUST00000142578 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031490 Eif4ebp1 ENSMUST00000033880 ENSMUSP00000033880 TRANSLATION protein_coding - CCDS22214.1 1 117.0 0.0 2.0 23.6 152.4 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000031490 Eif4ebp1 ENSMUST00000210959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056204 Pgpep1 ENSMUST00000210786 ENSMUSP00000148241 TRANSLATION nonsense_mediated_decay start - 5 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0143 - -2.0 MINOR ENSMUSG00000056204 Pgpep1 ENSMUST00000211715 ENSMUSP00000148119 TRANSLATION protein_coding - - 3 112.0 0.0 2.014 0.0 0.0 0.0 -4,-6 0.0011 - 0.0 MINOR ENSMUSG00000056204 Pgpep1 ENSMUST00000210459 - NO_TRANSLATION retained_intron ENSMUSG00000056204 Pgpep1 ENSMUST00000211526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056204 Pgpep1 ENSMUST00000210193 ENSMUSP00000148163 TRANSLATION protein_coding stop - 3 28.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0017 - -2.0 MINOR ENSMUSG00000056204 Pgpep1 ENSMUST00000209768 ENSMUSP00000148141 TRANSLATION protein_coding stop - 5 118.0 0.0 3.41 0.0 0.0 0.0 -4,-7 0.0038 - -2.0 MINOR ENSMUSG00000056204 Pgpep1 ENSMUST00000070173 ENSMUSP00000070778 TRANSLATION protein_coding - CCDS22377.1 1 209.0 0.0 6.41 22.6 0.0 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000056204 Pgpep1 ENSMUST00000210307 ENSMUSP00000147879 TRANSLATION protein_coding stop - 3 122.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.001 1 -2.0 MINOR ENSMUSG00000110469 Gm10358 ENSMUST00000212864 ENSMUSP00000148326 TRANSLATION protein_coding - - - 333.0 22.0 1.0 36.9 366.8 0.0 -4,-1 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000010154 Spire2 ENSMUST00000212404 ENSMUSP00000148710 TRANSLATION protein_coding - - 1 618.0 4.0 0.16 1.0 141.0 0.0 -4,-5 0.0025 4 6.04 MINOR ENSMUSG00000010154 Spire2 ENSMUST00000010298 ENSMUSP00000010298 TRANSLATION protein_coding - CCDS22754.1 1 718.0 4.0 0.64 0.0 232.0 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000035569 Ankrd11 ENSMUST00000212337 - NO_TRANSLATION retained_intron ENSMUSG00000035569 Ankrd11 ENSMUST00000174833 - NO_TRANSLATION retained_intron ENSMUSG00000035569 Ankrd11 ENSMUST00000172906 ENSMUSP00000133977 TRANSLATION nonsense_mediated_decay - - 1 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035569 Ankrd11 ENSMUST00000098334 ENSMUSP00000095939 TRANSLATION protein_coding - CCDS40507.2 5 2643.0 0.0 2.898 0.0 73.6 0.0 -4,-5 0.9663 12 6.0 ALTERNATIVE:2 ENSMUSG00000035569 Ankrd11 ENSMUST00000098333 ENSMUSP00000095938 TRANSLATION protein_coding - - 5 2664.0 0.0 2.898 0.0 73.6 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:4 ENSMUSG00000035569 Ankrd11 ENSMUST00000212050 ENSMUSP00000148645 TRANSLATION protein_coding start - 1 134.0 0.0 2.1875 0.0 46.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035569 Ankrd11 ENSMUST00000212937 ENSMUSP00000148523 TRANSLATION protein_coding - - 1 121.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000031906 Smpd3 ENSMUST00000212896 ENSMUSP00000148282 TRANSLATION protein_coding - CCDS22634.1 1 655.0 0.0 4.45 8.7 0.0 0.0 -2,-4 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000031906 Smpd3 ENSMUST00000067512 ENSMUSP00000069255 TRANSLATION protein_coding - CCDS22634.1 1 655.0 0.0 4.45 8.7 0.0 0.0 -2,-4 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000031823 Zdhhc7 ENSMUST00000124044 - NO_TRANSLATION retained_intron ENSMUSG00000031823 Zdhhc7 ENSMUST00000034280 ENSMUSP00000034280 TRANSLATION protein_coding - CCDS22715.1 1 308.0 7.0 5.75 27.0 123.8 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000031823 Zdhhc7 ENSMUST00000150444 - NO_TRANSLATION retained_intron ENSMUSG00000031823 Zdhhc7 ENSMUST00000141886 - NO_TRANSLATION retained_intron ENSMUSG00000031823 Zdhhc7 ENSMUST00000123186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064213 Defa24 ENSMUST00000080533 ENSMUSP00000079376 TRANSLATION protein_coding - CCDS40281.1 1 93.0 0.0 1.0 0.1 119.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000019464 Ptger1 ENSMUST00000212519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019464 Ptger1 ENSMUST00000019608 ENSMUSP00000019608 TRANSLATION protein_coding - CCDS22458.1 1 405.0 0.0 0.72 5.7 59.5 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000019464 Ptger1 ENSMUST00000159935 - NO_TRANSLATION retained_intron ENSMUSG00000047654 Tssk6 ENSMUST00000050373 ENSMUSP00000062783 TRANSLATION protein_coding - CCDS22354.1 - 273.0 16.0 1.0 17.0 203.3 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000053490 Trim60 ENSMUST00000048565 ENSMUSP00000040299 TRANSLATION protein_coding - CCDS22331.1 1 466.0 8.0 0.25 0.0 184.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000031449 Atp4b ENSMUST00000033826 ENSMUSP00000033826 TRANSLATION protein_coding - CCDS22111.1 1 294.0 0.0 6.3 13.9 352.1 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000031449 Atp4b ENSMUST00000210491 - NO_TRANSLATION retained_intron ENSMUSG00000036550 Cnot1 ENSMUST00000212323 ENSMUSP00000148574 TRANSLATION nonsense_mediated_decay - - 2 213.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 3 -2.0 MINOR ENSMUSG00000036550 Cnot1 ENSMUST00000211973 ENSMUSP00000148831 TRANSLATION protein_coding start/stop - 5 823.0 0.0 9.2 0.0 432.5 0.0 -4,-6 0.0025 19 -2.0 MINOR ENSMUSG00000036550 Cnot1 ENSMUST00000211937 - NO_TRANSLATION retained_intron ENSMUSG00000036550 Cnot1 ENSMUST00000213006 ENSMUSP00000148735 TRANSLATION nonsense_mediated_decay - - 1 1614.0 0.0 14.325 0.0 647.8 0.0 -4,-7 0.1717 42 -2.0 MINOR ENSMUSG00000036550 Cnot1 ENSMUST00000212369 - NO_TRANSLATION retained_intron ENSMUSG00000036550 Cnot1 ENSMUST00000212415 ENSMUSP00000148575 TRANSLATION nonsense_mediated_decay start - 5 122.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000036550 Cnot1 ENSMUST00000212302 - NO_TRANSLATION retained_intron ENSMUSG00000036550 Cnot1 ENSMUST00000212556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036550 Cnot1 ENSMUST00000211887 ENSMUSP00000148807 TRANSLATION protein_coding - CCDS85589.1 1 2369.0 0.0 25.125 19.1 638.4 0.0 -4,-7 1.0 58 11.714 PRINCIPAL:4 ENSMUSG00000036550 Cnot1 ENSMUST00000098473 ENSMUSP00000096073 TRANSLATION protein_coding - - 5 2376.0 0.0 25.125 19.1 647.8 0.0 -4,-7 0.8797 58 12.0 ALTERNATIVE:1 ENSMUSG00000036550 Cnot1 ENSMUST00000212535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036550 Cnot1 ENSMUST00000212195 - NO_TRANSLATION retained_intron ENSMUSG00000036550 Cnot1 ENSMUST00000068452 ENSMUSP00000063565 TRANSLATION protein_coding - CCDS57635.1 1 2326.0 0.0 24.125 0.0 638.4 0.0 -4,-7 0.2667 58 5.716 MINOR ENSMUSG00000036550 Cnot1 ENSMUST00000212340 - NO_TRANSLATION retained_intron ENSMUSG00000036550 Cnot1 ENSMUST00000213046 ENSMUSP00000148709 TRANSLATION protein_coding stop - 3 92.0 0.0 1.33 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000036550 Cnot1 ENSMUST00000212712 - NO_TRANSLATION retained_intron ENSMUSG00000036550 Cnot1 ENSMUST00000212228 - NO_TRANSLATION retained_intron ENSMUSG00000008450 Nutf2 ENSMUST00000212610 ENSMUSP00000148696 TRANSLATION protein_coding stop - 3 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008450 Nutf2 ENSMUST00000212398 - NO_TRANSLATION retained_intron ENSMUSG00000008450 Nutf2 ENSMUST00000212042 ENSMUSP00000148713 TRANSLATION protein_coding - CCDS22617.1 3 127.0 0.0 3.25 33.9 114.4 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000008450 Nutf2 ENSMUST00000008594 ENSMUSP00000008594 TRANSLATION protein_coding - CCDS22617.1 1 127.0 0.0 3.25 33.9 114.4 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000008450 Nutf2 ENSMUST00000212200 ENSMUSP00000148471 TRANSLATION protein_coding stop - 3 61.0 0.0 1.5 0.0 55.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008450 Nutf2 ENSMUST00000212484 ENSMUSP00000148704 TRANSLATION protein_coding stop - 3 61.0 0.0 1.5 0.0 55.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008450 Nutf2 ENSMUST00000212379 - NO_TRANSLATION retained_intron ENSMUSG00000094687 Defa25 ENSMUST00000095425 ENSMUSP00000093075 TRANSLATION protein_coding - CCDS52502.1 1 92.0 0.0 1.0 0.1 106.9 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049184 Purg ENSMUST00000070340 ENSMUSP00000065002 TRANSLATION protein_coding - CCDS22230.1 - 350.0 0.0 0.6 0.7 362.8 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000049184 Purg ENSMUST00000078058 ENSMUSP00000077205 TRANSLATION protein_coding - CCDS52538.1 1 325.0 0.0 0.1 2.7 304.2 0.0 -4,-6 0.3558 4 4.486 MINOR ENSMUSG00000031703 Itfg1 ENSMUST00000210572 - NO_TRANSLATION retained_intron ENSMUSG00000031703 Itfg1 ENSMUST00000034140 ENSMUSP00000034140 TRANSLATION protein_coding - CCDS40424.1 1 610.0 23.0 0.0 6.9 0.0 0.0 2,-3 1.0 8 8.0 PRINCIPAL:1 ENSMUSG00000031703 Itfg1 ENSMUST00000210604 - NO_TRANSLATION retained_intron ENSMUSG00000031703 Itfg1 ENSMUST00000210133 - NO_TRANSLATION retained_intron ENSMUSG00000063626 Unc5d ENSMUST00000211448 ENSMUSP00000147306 TRANSLATION protein_coding - CCDS85521.1 1 884.0 0.0 10.832 0.4 431.9 5.0 0,-5 0.1821 4 5.072 MINOR ENSMUSG00000063626 Unc5d ENSMUST00000168630 ENSMUSP00000128521 TRANSLATION protein_coding - CCDS40314.1 1 956.0 3.0 11.997 0.4 465.5 5.0 0,-5 1.0 5 11.0 PRINCIPAL:2 ENSMUSG00000063626 Unc5d ENSMUST00000209401 ENSMUSP00000148043 TRANSLATION protein_coding - CCDS85523.1 1 882.0 0.0 10.997 0.4 431.9 5.0 0,-5 0.1848 4 5.402 MINOR ENSMUSG00000063626 Unc5d ENSMUST00000210785 ENSMUSP00000147721 TRANSLATION protein_coding - CCDS85524.1 1 938.0 3.0 11.997 0.4 465.5 5.0 0,-5 0.5991 5 11.0 ALTERNATIVE:2 ENSMUSG00000063626 Unc5d ENSMUST00000210298 ENSMUSP00000148236 TRANSLATION protein_coding - CCDS85522.1 1 875.0 0.0 10.397 0.0 304.4 5.0 0,-5 0.0883 4 3.602 MINOR ENSMUSG00000050930 Map10 ENSMUST00000053078 ENSMUSP00000061679 TRANSLATION protein_coding - CCDS22780.1 - 891.0 0.0 0.0 0.1 431.7 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046152 Fut10 ENSMUST00000066173 ENSMUSP00000069816 TRANSLATION protein_coding - CCDS22223.1 1 481.0 7.0 1.885 11.6 162.7 0.0 -1,-5 1.0 1 20.904 PRINCIPAL:1 ENSMUSG00000046152 Fut10 ENSMUST00000110527 ENSMUSP00000106156 TRANSLATION protein_coding - CCDS72111.1 1 136.0 0.0 0.32 0.7 0.0 0.0 -1,-5 0.0283 - 1.02 MINOR ENSMUSG00000046152 Fut10 ENSMUST00000161502 ENSMUSP00000125265 TRANSLATION protein_coding - CCDS22223.1 1 481.0 7.0 1.885 11.6 162.7 0.0 -1,-5 1.0 1 20.904 PRINCIPAL:1 ENSMUSG00000046152 Fut10 ENSMUST00000161788 ENSMUSP00000124437 TRANSLATION protein_coding - CCDS52536.1 1 436.0 7.0 1.48 0.0 164.3 0.0 -1,-5 0.0826 1 16.71 MINOR ENSMUSG00000046152 Fut10 ENSMUST00000162162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040340 Tex45 ENSMUST00000161680 ENSMUSP00000124916 TRANSLATION protein_coding - CCDS52467.1 5 500.0 0.0 0.0 0.4 778.3 0.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000040340 Tex45 ENSMUST00000047265 ENSMUSP00000043586 TRANSLATION protein_coding - CCDS52467.1 5 500.0 0.0 0.0 0.4 778.3 0.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000040340 Tex45 ENSMUST00000159076 ENSMUSP00000123746 TRANSLATION nonsense_mediated_decay - - 5 341.0 0.0 0.0 0.1 473.3 0.0 -4,-6 0.0072 1 -2.0 MINOR ENSMUSG00000060212 Pcnx2 ENSMUST00000187772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060212 Pcnx2 ENSMUST00000119305 - NO_TRANSLATION retained_intron ENSMUSG00000060212 Pcnx2 ENSMUST00000047239 ENSMUSP00000042294 TRANSLATION protein_coding - CCDS52708.1 5 2122.0 0.0 0.0 0.0 371.5 8.0 -2,-5 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000060212 Pcnx2 ENSMUST00000189197 - NO_TRANSLATION retained_intron ENSMUSG00000060212 Pcnx2 ENSMUST00000131127 ENSMUSP00000119965 TRANSLATION protein_coding - - 5 1121.0 0.0 0.0 0.0 0.0 7.0 -2,-5 0.0236 4 0.0 MINOR ENSMUSG00000060212 Pcnx2 ENSMUST00000120589 - NO_TRANSLATION retained_intron ENSMUSG00000036270 Edc4 ENSMUST00000132680 ENSMUSP00000114209 TRANSLATION protein_coding start/stop - 5 427.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0019 6 -2.0 MINOR ENSMUSG00000036270 Edc4 ENSMUST00000040254 ENSMUSP00000039134 TRANSLATION protein_coding - CCDS80923.1 1 1406.0 0.0 1.85 9.1 482.8 0.0 -4,-5 1.0 34 15.0 PRINCIPAL:1 ENSMUSG00000036270 Edc4 ENSMUST00000136048 ENSMUSP00000114285 TRANSLATION nonsense_mediated_decay - - 5 1318.0 0.0 1.65 0.0 324.2 0.0 -4,-5 0.0222 27 -2.0 MINOR ENSMUSG00000036270 Edc4 ENSMUST00000156357 - NO_TRANSLATION retained_intron ENSMUSG00000036270 Edc4 ENSMUST00000119261 ENSMUSP00000113854 TRANSLATION protein_coding - CCDS52662.1 1 1390.0 0.0 1.85 0.0 482.8 0.0 -4,-5 0.5318 33 12.0 MINOR ENSMUSG00000036270 Edc4 ENSMUST00000139154 - NO_TRANSLATION retained_intron ENSMUSG00000036270 Edc4 ENSMUST00000145618 ENSMUSP00000118162 TRANSLATION protein_coding start/stop - 5 265.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000031673 Cdh11 ENSMUST00000210425 - NO_TRANSLATION retained_intron ENSMUSG00000031673 Cdh11 ENSMUST00000210578 - NO_TRANSLATION retained_intron ENSMUSG00000031673 Cdh11 ENSMUST00000075190 ENSMUSP00000074681 TRANSLATION protein_coding - CCDS22571.1 1 796.0 49.0 9.08 30.9 415.5 0.0 -1,-4 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000047747 Rnf150 ENSMUST00000211714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047747 Rnf150 ENSMUST00000211020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047747 Rnf150 ENSMUST00000078525 ENSMUSP00000077610 TRANSLATION protein_coding - CCDS40402.1 1 437.0 8.0 3.9 8.2 74.0 0.0 2,-3 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000036902 Neto2 ENSMUST00000209259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036902 Neto2 ENSMUST00000209479 ENSMUSP00000148172 TRANSLATION protein_coding - - 1 518.0 3.0 2.505 21.1 161.5 1.0 1,-3 0.958 9 14.43 ALTERNATIVE:1 ENSMUSG00000036902 Neto2 ENSMUST00000216286 ENSMUSP00000150062 TRANSLATION protein_coding - - 1 525.0 3.0 2.769 21.1 161.5 1.0 1,-3 1.0 9 15.0 PRINCIPAL:4 ENSMUSG00000036902 Neto2 ENSMUST00000215046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036902 Neto2 ENSMUST00000109686 ENSMUSP00000105308 TRANSLATION protein_coding - CCDS40423.1 1 553.0 3.0 2.505 0.0 161.5 1.0 -4,-7 0.097 9 10.43 MINOR ENSMUSG00000094362 Defa33 ENSMUST00000120874 ENSMUSP00000129593 TRANSLATION protein_coding - CCDS57611.1 1 95.0 0.0 1.0 0.0 78.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032939 Nup93 ENSMUST00000212984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032939 Nup93 ENSMUST00000212824 ENSMUSP00000148700 TRANSLATION protein_coding - CCDS22540.1 1 819.0 0.0 12.678 34.9 654.4 0.0 -4,-5 1.0 29 16.0 PRINCIPAL:1 ENSMUSG00000032939 Nup93 ENSMUST00000212039 - NO_TRANSLATION retained_intron ENSMUSG00000032939 Nup93 ENSMUST00000109547 ENSMUSP00000105174 TRANSLATION protein_coding - CCDS22540.1 5 819.0 0.0 12.678 34.9 654.4 0.0 -4,-5 1.0 29 16.0 PRINCIPAL:1 ENSMUSG00000032939 Nup93 ENSMUST00000212062 - NO_TRANSLATION retained_intron ENSMUSG00000032939 Nup93 ENSMUST00000079961 ENSMUSP00000078878 TRANSLATION protein_coding - CCDS22540.1 1 819.0 0.0 12.678 34.9 654.4 0.0 -4,-5 1.0 29 16.0 PRINCIPAL:1 ENSMUSG00000032939 Nup93 ENSMUST00000211822 ENSMUSP00000148458 TRANSLATION protein_coding - - 1 699.0 0.0 12.678 0.0 654.4 0.0 -4,-5 0.0736 22 12.0 MINOR ENSMUSG00000032939 Nup93 ENSMUST00000212167 ENSMUSP00000148672 TRANSLATION protein_coding stop - 3 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038250 Usp38 ENSMUST00000042724 ENSMUSP00000039943 TRANSLATION protein_coding - CCDS22444.1 1 1042.0 4.0 7.6 11.3 142.7 0.0 -4,-5 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000038250 Usp38 ENSMUST00000211538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040220 Gas8 ENSMUST00000093043 ENSMUSP00000090730 TRANSLATION protein_coding - CCDS40512.1 1 478.0 0.0 0.0 12.7 264.2 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000040220 Gas8 ENSMUST00000212809 - NO_TRANSLATION retained_intron ENSMUSG00000040220 Gas8 ENSMUST00000212923 ENSMUSP00000148576 TRANSLATION protein_coding - - 1 469.0 0.0 0.0 0.0 264.2 0.0 -4,-5 0.1044 3 6.0 MINOR ENSMUSG00000000743 Chmp1a ENSMUST00000212107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000743 Chmp1a ENSMUST00000000759 ENSMUSP00000000759 TRANSLATION protein_coding - CCDS40509.1 1 196.0 0.0 3.08 34.9 47.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000000743 Chmp1a ENSMUST00000167655 - NO_TRANSLATION retained_intron ENSMUSG00000000743 Chmp1a ENSMUST00000172336 - NO_TRANSLATION retained_intron ENSMUSG00000031805 Jak3 ENSMUST00000051995 ENSMUSP00000060073 TRANSLATION protein_coding - CCDS22403.1 1 1100.0 0.0 17.6 3.7 431.1 0.0 -4,-6 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000031805 Jak3 ENSMUST00000110013 ENSMUSP00000105640 TRANSLATION protein_coding - CCDS22403.1 1 1100.0 0.0 17.6 3.7 431.1 0.0 -4,-6 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000031805 Jak3 ENSMUST00000133263 - NO_TRANSLATION retained_intron ENSMUSG00000031805 Jak3 ENSMUST00000110012 ENSMUSP00000105639 TRANSLATION protein_coding - CCDS22403.1 5 1100.0 0.0 17.6 3.7 431.1 0.0 -4,-6 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000031805 Jak3 ENSMUST00000130624 - NO_TRANSLATION retained_intron ENSMUSG00000036120 Rfxank ENSMUST00000212472 - NO_TRANSLATION retained_intron ENSMUSG00000036120 Rfxank ENSMUST00000212320 ENSMUSP00000148739 TRANSLATION protein_coding - CCDS22360.1 1 269.0 0.0 5.273 0.7 63.5 0.0 -4,-5 0.2831 3 12.0 MINOR ENSMUSG00000036120 Rfxank ENSMUST00000075724 ENSMUSP00000075140 TRANSLATION protein_coding - CCDS85552.1 1 259.0 0.0 5.075 11.6 63.5 0.0 -4,-5 1.0 3 14.604 PRINCIPAL:1 ENSMUSG00000036120 Rfxank ENSMUST00000211970 - NO_TRANSLATION retained_intron ENSMUSG00000003657 Calb2 ENSMUST00000003754 ENSMUSP00000003754 TRANSLATION protein_coding - CCDS22661.1 1 271.0 25.0 7.4 21.9 105.8 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000003657 Calb2 ENSMUST00000212297 ENSMUSP00000148680 TRANSLATION protein_coding - - 1 242.0 25.0 6.6 0.0 105.8 0.0 -4,-6 0.0175 9 16.398 MINOR ENSMUSG00000051147 Nat2 ENSMUST00000093470 ENSMUSP00000091181 TRANSLATION protein_coding - CCDS22338.1 1 290.0 10.0 1.0 17.4 321.7 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000051147 Nat2 ENSMUST00000163856 ENSMUSP00000130065 TRANSLATION protein_coding - CCDS22338.1 1 290.0 10.0 1.0 17.4 321.7 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000008874 Clec3a ENSMUST00000009018 ENSMUSP00000009018 TRANSLATION protein_coding - CCDS22690.1 1 196.0 10.0 2.15 22.9 61.7 0.0 3,-1 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000031596 Slc7a2 ENSMUST00000098816 ENSMUSP00000096414 TRANSLATION protein_coding - CCDS40327.1 1 658.0 0.0 5.584 10.7 195.3 15.0 -4,-1 0.9776 9 11.0 PRINCIPAL:3 ENSMUSG00000031596 Slc7a2 ENSMUST00000117077 ENSMUSP00000113729 TRANSLATION protein_coding - CCDS40327.1 1 658.0 0.0 5.584 10.7 195.3 15.0 -4,-1 0.9776 9 11.0 PRINCIPAL:3 ENSMUSG00000031596 Slc7a2 ENSMUST00000057784 ENSMUSP00000058866 TRANSLATION protein_coding - CCDS22258.1 1 657.0 0.0 5.584 10.7 206.0 15.0 -4,-1 1.0 8 11.0 ALTERNATIVE:1 ENSMUSG00000031596 Slc7a2 ENSMUST00000141505 ENSMUSP00000114675 TRANSLATION protein_coding stop - 2 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0068 - -2.0 MINOR ENSMUSG00000031596 Slc7a2 ENSMUST00000118432 ENSMUSP00000112848 TRANSLATION protein_coding - - 1 674.0 0.0 5.584 0.0 206.0 15.0 -4,0 0.1339 8 8.0 MINOR ENSMUSG00000070002 Ell ENSMUST00000210155 ENSMUSP00000147325 TRANSLATION protein_coding stop - 5 52.0 0.0 0.0 0.0 41.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000070002 Ell ENSMUST00000093454 ENSMUSP00000091163 TRANSLATION protein_coding - CCDS22372.1 1 602.0 0.0 4.7 0.4 478.3 0.0 -4,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000047710 Champ1 ENSMUST00000051870 ENSMUSP00000057270 TRANSLATION protein_coding - CCDS22116.1 1 802.0 13.0 0.0 0.1 0.0 0.0 -4,-5 0.8858 18 6.0 PRINCIPAL:1 ENSMUSG00000047710 Champ1 ENSMUST00000128557 ENSMUSP00000120117 TRANSLATION protein_coding - CCDS22116.1 1 802.0 13.0 0.0 0.1 0.0 0.0 -4,-5 0.8858 18 6.0 PRINCIPAL:1 ENSMUSG00000058568 Defb50 ENSMUST00000078879 ENSMUSP00000077918 TRANSLATION protein_coding - CCDS40283.1 1 73.0 0.0 0.0 0.1 0.0 0.0 4,-1 0.9444 1 0.0 PRINCIPAL:1 ENSMUSG00000014837 Matcap1 ENSMUST00000212219 ENSMUSP00000148836 TRANSLATION protein_coding - CCDS22596.1 1 467.0 0.0 5.4 5.3 0.0 0.0 -4,-6 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000014837 Matcap1 ENSMUST00000212922 ENSMUSP00000148562 TRANSLATION protein_coding - CCDS22596.1 1 467.0 0.0 5.4 5.3 0.0 0.0 -4,-6 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000014837 Matcap1 ENSMUST00000212529 - NO_TRANSLATION retained_intron ENSMUSG00000014837 Matcap1 ENSMUST00000014981 ENSMUSP00000014981 TRANSLATION protein_coding - CCDS22596.1 1 467.0 0.0 5.4 5.3 0.0 0.0 -4,-6 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000014837 Matcap1 ENSMUST00000171788 ENSMUSP00000128530 TRANSLATION protein_coding - CCDS22596.1 5 467.0 0.0 5.4 5.3 0.0 0.0 -4,-6 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000074156 Ces1h ENSMUST00000145041 ENSMUSP00000121729 TRANSLATION protein_coding - - 5 562.0 6.0 11.7 7.3 546.8 0.0 3,-2 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000039199 Zdhhc1 ENSMUST00000212538 - NO_TRANSLATION retained_intron ENSMUSG00000039199 Zdhhc1 ENSMUST00000212303 ENSMUSP00000148381 TRANSLATION protein_coding - CCDS22603.1 1 484.0 6.0 6.0 1.7 125.6 3.0 -4,-7 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000039199 Zdhhc1 ENSMUST00000212109 - NO_TRANSLATION retained_intron ENSMUSG00000039199 Zdhhc1 ENSMUST00000044286 ENSMUSP00000036471 TRANSLATION protein_coding - CCDS22603.1 1 484.0 6.0 6.0 1.7 125.6 3.0 -4,-7 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000031960 Aars ENSMUST00000125268 ENSMUSP00000122388 TRANSLATION protein_coding stop - 3 7.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0209 - -2.0 MINOR ENSMUSG00000031960 Aars ENSMUST00000034441 ENSMUSP00000034441 TRANSLATION protein_coding - CCDS40478.1 1 968.0 22.0 15.85 33.9 878.7 0.0 -4,-2 1.0 31 22.0 PRINCIPAL:1 ENSMUSG00000031960 Aars ENSMUST00000154546 - NO_TRANSLATION retained_intron ENSMUSG00000031960 Aars ENSMUST00000124285 - NO_TRANSLATION retained_intron ENSMUSG00000031960 Aars ENSMUST00000128320 - NO_TRANSLATION retained_intron ENSMUSG00000031960 Aars ENSMUST00000145059 - NO_TRANSLATION retained_intron ENSMUSG00000031960 Aars ENSMUST00000142770 - NO_TRANSLATION retained_intron ENSMUSG00000031565 Fgfr1 ENSMUST00000138455 ENSMUSP00000147898 TRANSLATION nonsense_mediated_decay start - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031565 Fgfr1 ENSMUST00000210846 ENSMUSP00000148032 TRANSLATION protein_coding stop - 2 86.0 0.0 2.15 0.0 0.0 0.0 4,-1 0.0017 1 -2.0 MINOR ENSMUSG00000031565 Fgfr1 ENSMUST00000120106 - NO_TRANSLATION retained_intron ENSMUSG00000031565 Fgfr1 ENSMUST00000148322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031565 Fgfr1 ENSMUST00000210504 - NO_TRANSLATION retained_intron ENSMUSG00000031565 Fgfr1 ENSMUST00000133936 - NO_TRANSLATION retained_intron ENSMUSG00000031565 Fgfr1 ENSMUST00000138104 ENSMUSP00000148135 TRANSLATION nonsense_mediated_decay start - 5 300.0 0.0 6.08 0.0 102.6 0.0 -4,-5 0.001 3 -2.0 MINOR ENSMUSG00000031565 Fgfr1 ENSMUST00000119398 ENSMUSP00000113855 TRANSLATION protein_coding - CCDS40304.1 1 733.0 19.0 12.48 9.6 449.7 1.0 4,-1 0.3916 6 8.414 MINOR ENSMUSG00000031565 Fgfr1 ENSMUST00000167764 ENSMUSP00000131343 TRANSLATION protein_coding - - 1 733.0 19.0 12.48 11.6 450.8 1.0 4,-1 0.4582 6 10.152 MINOR ENSMUSG00000031565 Fgfr1 ENSMUST00000210778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031565 Fgfr1 ENSMUST00000155564 ENSMUSP00000117884 TRANSLATION protein_coding stop - 3 50.0 0.0 0.9 0.0 0.0 0.0 4,-1 0.0017 - -2.0 MINOR ENSMUSG00000031565 Fgfr1 ENSMUST00000124228 ENSMUSP00000116564 TRANSLATION protein_coding stop - 3 104.0 0.0 2.9 0.0 28.8 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000031565 Fgfr1 ENSMUST00000211419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031565 Fgfr1 ENSMUST00000126118 - NO_TRANSLATION retained_intron ENSMUSG00000031565 Fgfr1 ENSMUST00000084027 ENSMUSP00000081041 TRANSLATION protein_coding - CCDS52526.1 5 822.0 19.0 15.48 20.7 480.7 1.0 4,-1 0.9987 7 17.334 ALTERNATIVE:1 ENSMUSG00000031565 Fgfr1 ENSMUST00000145218 - NO_TRANSLATION retained_intron ENSMUSG00000031565 Fgfr1 ENSMUST00000117179 ENSMUSP00000113909 TRANSLATION protein_coding - CCDS57614.1 1 820.0 19.0 15.48 20.7 480.7 1.0 4,-1 1.0 7 17.334 PRINCIPAL:4 ENSMUSG00000005469 Prkaca ENSMUST00000211558 ENSMUSP00000147256 TRANSLATION protein_coding - CCDS85574.1 5 343.0 17.0 8.665 6.7 244.6 0.0 -4,-5 1.0 8 19.328 PRINCIPAL:1 ENSMUSG00000005469 Prkaca ENSMUST00000005606 ENSMUSP00000005606 TRANSLATION protein_coding - CCDS22463.1 1 351.0 17.0 9.0 0.0 244.6 0.0 -4,-5 0.1738 9 18.0 MINOR ENSMUSG00000053560 Ier2 ENSMUST00000060427 ENSMUSP00000060275 TRANSLATION protein_coding - CCDS22474.1 - 221.0 0.0 0.4 7.3 65.6 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031684 Slc10a7 ENSMUST00000209643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031684 Slc10a7 ENSMUST00000210515 ENSMUSP00000147826 TRANSLATION nonsense_mediated_decay - - 1 103.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000031684 Slc10a7 ENSMUST00000211286 ENSMUSP00000147724 TRANSLATION nonsense_mediated_decay - CCDS40395.1 1 340.0 0.0 1.89 15.5 54.3 12.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000031684 Slc10a7 ENSMUST00000210630 ENSMUSP00000147396 TRANSLATION nonsense_mediated_decay - - 1 123.0 0.0 0.7 4.0 0.0 4.0 -4,-7 0.0489 1 -2.0 MINOR ENSMUSG00000031684 Slc10a7 ENSMUST00000211315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031684 Slc10a7 ENSMUST00000209490 ENSMUSP00000148199 TRANSLATION protein_coding - CCDS85567.1 1 298.0 0.0 1.89 0.0 54.3 10.0 -4,-7 0.2251 2 12.0 MINOR ENSMUSG00000031684 Slc10a7 ENSMUST00000210132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031684 Slc10a7 ENSMUST00000211332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031684 Slc10a7 ENSMUST00000034111 ENSMUSP00000034111 TRANSLATION protein_coding - CCDS40395.1 1 340.0 0.0 1.89 15.5 54.3 12.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000031684 Slc10a7 ENSMUST00000209992 ENSMUSP00000147659 TRANSLATION protein_coding - CCDS85568.1 1 312.0 0.0 1.59 2.2 0.0 10.0 -4,-7 0.1098 3 5.378 MINOR ENSMUSG00000031684 Slc10a7 ENSMUST00000210703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031592 Pcm1 ENSMUST00000211247 ENSMUSP00000147887 TRANSLATION protein_coding - - 5 2064.0 0.0 0.0 0.4 929.3 0.0 -4,-5 0.4231 39 2.0 ALTERNATIVE:2 ENSMUSG00000031592 Pcm1 ENSMUST00000210862 ENSMUSP00000148180 TRANSLATION protein_coding stop - 3 157.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031592 Pcm1 ENSMUST00000045218 ENSMUSP00000039709 TRANSLATION protein_coding - CCDS22261.1 1 2025.0 0.0 0.0 0.4 929.3 0.0 -4,-5 1.0 39 2.0 PRINCIPAL:2 ENSMUSG00000031592 Pcm1 ENSMUST00000211090 - NO_TRANSLATION retained_intron ENSMUSG00000090137 Uba52 ENSMUST00000081940 ENSMUSP00000080608 TRANSLATION protein_coding - CCDS22371.1 2 128.0 4.0 3.75 32.0 231.5 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000090137 Uba52 ENSMUST00000125184 ENSMUSP00000120096 TRANSLATION protein_coding - CCDS22371.1 1 128.0 4.0 3.75 32.0 231.5 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000090137 Uba52 ENSMUST00000124967 ENSMUSP00000122797 TRANSLATION protein_coding stop - 1 96.0 0.0 2.75 0.0 154.2 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000090137 Uba52 ENSMUST00000129909 ENSMUSP00000121149 TRANSLATION protein_coding - CCDS22371.1 2 128.0 4.0 3.75 32.0 231.5 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000090137 Uba52 ENSMUST00000165126 ENSMUSP00000137461 TRANSLATION protein_coding - CCDS22371.1 1 128.0 4.0 3.75 32.0 231.5 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000090137 Uba52 ENSMUST00000127793 - NO_TRANSLATION retained_intron ENSMUSG00000090137 Uba52 ENSMUST00000135446 ENSMUSP00000123562 TRANSLATION protein_coding - CCDS22371.1 3 128.0 4.0 3.75 32.0 231.5 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000090137 Uba52 ENSMUST00000140679 ENSMUSP00000123263 TRANSLATION protein_coding - CCDS22371.1 2 128.0 4.0 3.75 32.0 231.5 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000031930 Wwp2 ENSMUST00000213097 ENSMUSP00000148365 TRANSLATION protein_coding stop - 3 104.0 0.0 1.24 0.0 29.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000031930 Wwp2 ENSMUST00000212906 - NO_TRANSLATION retained_intron ENSMUSG00000031930 Wwp2 ENSMUST00000212559 - NO_TRANSLATION retained_intron ENSMUSG00000031930 Wwp2 ENSMUST00000166615 ENSMUSP00000132224 TRANSLATION protein_coding - CCDS40467.1 1 870.0 0.0 16.004 10.9 544.9 0.0 -4,-1 1.0 13 14.892 PRINCIPAL:1 ENSMUSG00000031930 Wwp2 ENSMUST00000212993 - NO_TRANSLATION retained_intron ENSMUSG00000031930 Wwp2 ENSMUST00000212205 ENSMUSP00000148679 TRANSLATION protein_coding - - 1 824.0 0.0 15.604 0.0 544.9 0.0 -4,-1 0.0822 12 11.202 MINOR ENSMUSG00000031930 Wwp2 ENSMUST00000212737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031930 Wwp2 ENSMUST00000212063 - NO_TRANSLATION retained_intron ENSMUSG00000031930 Wwp2 ENSMUST00000212012 - NO_TRANSLATION retained_intron ENSMUSG00000031930 Wwp2 ENSMUST00000212543 ENSMUSP00000148813 TRANSLATION protein_coding - - 1 431.0 0.0 11.25 14.7 372.6 0.0 -4,-5 0.5965 4 4.0 MINOR ENSMUSG00000031930 Wwp2 ENSMUST00000212645 - NO_TRANSLATION retained_intron ENSMUSG00000019433 Gipc1 ENSMUST00000211985 ENSMUSP00000148847 TRANSLATION protein_coding stop - 3 105.0 0.0 2.0 0.0 35.2 0.0 -4,-5 0.0024 - -2.0 MINOR ENSMUSG00000019433 Gipc1 ENSMUST00000212463 ENSMUSP00000148824 TRANSLATION protein_coding stop - 5 65.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019433 Gipc1 ENSMUST00000019577 ENSMUSP00000019577 TRANSLATION protein_coding - CCDS22457.1 1 333.0 0.0 5.65 30.8 33.2 0.0 -4,-6 1.0 6 15.658 PRINCIPAL:1 ENSMUSG00000031487 Brf2 ENSMUST00000211236 ENSMUSP00000147895 TRANSLATION protein_coding start - 3 54.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000031487 Brf2 ENSMUST00000211151 ENSMUSP00000147950 TRANSLATION nonsense_mediated_decay - - 5 85.0 4.0 0.4 0.0 32.7 0.0 -4,-5 0.0169 - -2.0 MINOR ENSMUSG00000031487 Brf2 ENSMUST00000210590 - NO_TRANSLATION retained_intron ENSMUSG00000031487 Brf2 ENSMUST00000210230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031487 Brf2 ENSMUST00000210552 ENSMUSP00000147711 TRANSLATION nonsense_mediated_decay - - 1 85.0 4.0 0.4 0.0 32.7 0.0 -4,-5 0.0169 - -2.0 MINOR ENSMUSG00000031487 Brf2 ENSMUST00000209770 ENSMUSP00000147259 TRANSLATION nonsense_mediated_decay - - 3 85.0 4.0 0.4 0.0 32.7 0.0 -4,-5 0.0169 - -2.0 MINOR ENSMUSG00000031487 Brf2 ENSMUST00000033877 ENSMUSP00000033877 TRANSLATION protein_coding - CCDS22211.1 1 420.0 4.0 3.05 8.4 32.7 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000049988 Lrrc25 ENSMUST00000052437 ENSMUSP00000049686 TRANSLATION protein_coding - CCDS22375.1 1 297.0 0.0 1.6 0.0 27.1 0.0 4,-1 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000049988 Lrrc25 ENSMUST00000210609 ENSMUSP00000147438 TRANSLATION protein_coding stop - 2 71.0 0.0 0.8 0.0 0.0 0.0 4,-1 0.0035 - -2.0 MINOR ENSMUSG00000004626 Stxbp2 ENSMUST00000159652 - NO_TRANSLATION retained_intron ENSMUSG00000004626 Stxbp2 ENSMUST00000160708 ENSMUSP00000125405 TRANSLATION protein_coding - CCDS22067.1 1 593.0 0.0 13.822 9.9 431.6 0.0 -4,-6 1.0 21 13.224 PRINCIPAL:1 ENSMUSG00000004626 Stxbp2 ENSMUST00000162867 ENSMUSP00000146468 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004626 Stxbp2 ENSMUST00000162047 - NO_TRANSLATION retained_intron ENSMUSG00000004626 Stxbp2 ENSMUST00000163044 - NO_TRANSLATION retained_intron ENSMUSG00000004626 Stxbp2 ENSMUST00000160435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004626 Stxbp2 ENSMUST00000162974 - NO_TRANSLATION retained_intron ENSMUSG00000004626 Stxbp2 ENSMUST00000159370 ENSMUSP00000147088 TRANSLATION protein_coding start - 3 125.0 0.0 2.49 0.0 52.4 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000004626 Stxbp2 ENSMUST00000162737 - NO_TRANSLATION retained_intron ENSMUSG00000004626 Stxbp2 ENSMUST00000161982 - NO_TRANSLATION retained_intron ENSMUSG00000004626 Stxbp2 ENSMUST00000159911 ENSMUSP00000147220 TRANSLATION protein_coding stop - 3 119.0 0.0 2.7376 0.0 41.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004626 Stxbp2 ENSMUST00000162832 - NO_TRANSLATION retained_intron ENSMUSG00000004626 Stxbp2 ENSMUST00000159888 ENSMUSP00000146798 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000004626 Stxbp2 ENSMUST00000161629 - NO_TRANSLATION retained_intron ENSMUSG00000004626 Stxbp2 ENSMUST00000004745 ENSMUSP00000004745 TRANSLATION protein_coding start - 1 594.0 0.0 14.69 9.9 432.3 0.0 -4,-5 0.8649 20 -2.0 MINOR ENSMUSG00000046881 Or1ab2 ENSMUST00000209675 ENSMUSP00000147795 TRANSLATION protein_coding - CCDS22407.1 - 313.0 0.0 1.0 8.0 202.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046881 Or1ab2 ENSMUST00000210435 ENSMUSP00000147605 TRANSLATION protein_coding - CCDS22407.1 2 313.0 0.0 1.0 8.0 202.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046881 Or1ab2 ENSMUST00000210923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031555 Adam9 ENSMUST00000211319 ENSMUSP00000148096 TRANSLATION nonsense_mediated_decay start - 5 130.0 1.0 0.6 0.0 35.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000031555 Adam9 ENSMUST00000207132 ENSMUSP00000147165 TRANSLATION protein_coding stop - 5 159.0 4.0 1.6 0.0 80.5 0.0 2,-2 0.0013 2 -2.0 MINOR ENSMUSG00000031555 Adam9 ENSMUST00000208247 ENSMUSP00000146545 TRANSLATION protein_coding - CCDS85516.1 1 863.0 19.0 8.305 0.0 534.6 0.0 2,-2 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000025318 Jph3 ENSMUST00000026357 ENSMUSP00000026357 TRANSLATION protein_coding - CCDS22728.1 1 744.0 0.0 0.48 1.8 161.0 1.0 -4,-5 1.0 15 13.0 PRINCIPAL:1 ENSMUSG00000025318 Jph3 ENSMUST00000167439 ENSMUSP00000126190 TRANSLATION nonsense_mediated_decay - CCDS22728.1 1 744.0 0.0 0.48 1.8 161.0 1.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000025318 Jph3 ENSMUST00000169735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025318 Jph3 ENSMUST00000172209 - NO_TRANSLATION retained_intron ENSMUSG00000110622 Iqcn ENSMUST00000212436 ENSMUSP00000148728 TRANSLATION protein_coding - - 5 1434.0 0.0 0.0 0.0 89.5 0.0 -4,-6 0.9086 10 6.0 PRINCIPAL:1 ENSMUSG00000031893 Tsnaxip1 ENSMUST00000211949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031893 Tsnaxip1 ENSMUST00000212566 ENSMUSP00000148715 TRANSLATION protein_coding - - 1 626.0 3.0 0.0 0.0 101.3 0.0 -4,-7 0.0966 - 5.0 ALTERNATIVE:2 ENSMUSG00000031893 Tsnaxip1 ENSMUST00000034365 ENSMUSP00000034365 TRANSLATION protein_coding - CCDS22614.1 1 704.0 3.0 0.0 1.4 101.3 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000039620 Trmt9b ENSMUST00000125492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039620 Trmt9b ENSMUST00000147525 ENSMUSP00000119912 TRANSLATION protein_coding - CCDS22248.1 1 447.0 17.0 1.14 6.1 59.6 0.0 -4,-5 1.0 5 19.52 PRINCIPAL:1 ENSMUSG00000039620 Trmt9b ENSMUST00000135373 ENSMUSP00000120524 TRANSLATION protein_coding - - 1 126.0 17.0 1.239 0.0 34.8 0.0 -4,-5 0.0195 3 15.504 MINOR ENSMUSG00000039620 Trmt9b ENSMUST00000171777 ENSMUSP00000127875 TRANSLATION protein_coding - CCDS22248.1 1 447.0 17.0 1.14 6.1 59.6 0.0 -4,-5 1.0 5 19.52 PRINCIPAL:1 ENSMUSG00000039620 Trmt9b ENSMUST00000152039 ENSMUSP00000119288 TRANSLATION nonsense_mediated_decay - - 1 110.0 15.0 1.14 0.0 33.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000048617 Rtbdn ENSMUST00000109740 ENSMUSP00000105362 TRANSLATION protein_coding - CCDS22485.1 1 247.0 0.0 0.698 0.0 127.4 1.0 1,-2 0.6208 - 6.0 PRINCIPAL:4 ENSMUSG00000048617 Rtbdn ENSMUST00000121880 ENSMUSP00000113982 TRANSLATION protein_coding - CCDS22485.1 1 247.0 0.0 0.698 0.0 127.4 1.0 1,-2 0.6208 - 6.0 PRINCIPAL:4 ENSMUSG00000048617 Rtbdn ENSMUST00000152378 ENSMUSP00000132841 TRANSLATION protein_coding - - 1 216.0 0.0 0.698 0.0 119.7 0.0 -4,-7 0.4508 - 6.0 ALTERNATIVE:2 ENSMUSG00000048617 Rtbdn ENSMUST00000067472 ENSMUSP00000070558 TRANSLATION protein_coding - CCDS22485.1 1 247.0 0.0 0.698 0.0 127.4 1.0 1,-2 0.6208 - 6.0 PRINCIPAL:4 ENSMUSG00000003316 Glg1 ENSMUST00000169020 ENSMUSP00000131355 TRANSLATION protein_coding - CCDS22671.1 1 1175.0 0.0 0.0 1.2 734.9 1.0 2,-3 1.0 34 7.0 PRINCIPAL:1 ENSMUSG00000003316 Glg1 ENSMUST00000003404 ENSMUSP00000003404 TRANSLATION protein_coding stop - 5 1163.0 0.0 0.0 0.0 725.1 1.0 2,-3 0.2785 34 -2.0 MINOR ENSMUSG00000003316 Glg1 ENSMUST00000164283 ENSMUSP00000131659 TRANSLATION nonsense_mediated_decay - - 5 302.0 0.0 0.0 0.0 84.3 0.0 2,-3 0.0034 5 -2.0 MINOR ENSMUSG00000003316 Glg1 ENSMUST00000168741 ENSMUSP00000130327 TRANSLATION protein_coding start - 1 591.0 0.0 0.0 0.0 388.9 1.0 -4,-6 0.0066 18 -2.0 MINOR ENSMUSG00000035930 Chst4 ENSMUST00000109222 ENSMUSP00000104845 TRANSLATION protein_coding - CCDS22659.1 1 388.0 12.0 1.8 4.1 82.6 0.0 -1,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000035930 Chst4 ENSMUST00000212934 ENSMUSP00000148756 TRANSLATION protein_coding stop - 3 235.0 8.0 1.0 0.0 31.0 0.0 -1,-5 0.0 2 -2.0 MINOR ENSMUSG00000035930 Chst4 ENSMUST00000211894 ENSMUSP00000148741 TRANSLATION protein_coding - - 1 471.0 12.0 1.8 0.0 82.6 0.0 -4,0 0.0555 3 18.0 MINOR ENSMUSG00000039661 Dusp26 ENSMUST00000161713 ENSMUSP00000124949 TRANSLATION protein_coding - CCDS22219.1 1 211.0 8.0 2.8 12.5 107.3 0.0 -4,0 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000039661 Dusp26 ENSMUST00000162551 - NO_TRANSLATION retained_intron ENSMUSG00000039661 Dusp26 ENSMUST00000160700 - NO_TRANSLATION retained_intron ENSMUSG00000039661 Dusp26 ENSMUST00000170204 ENSMUSP00000126397 TRANSLATION protein_coding - CCDS22219.1 5 211.0 8.0 2.8 12.5 107.3 0.0 -4,0 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000039661 Dusp26 ENSMUST00000036631 ENSMUSP00000046794 TRANSLATION protein_coding - CCDS22219.1 1 211.0 8.0 2.8 12.5 107.3 0.0 -4,0 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000031681 Smad1 ENSMUST00000066081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031681 Smad1 ENSMUST00000066091 ENSMUSP00000071035 TRANSLATION protein_coding - CCDS22437.1 1 465.0 4.0 4.0 27.9 396.2 0.0 -4,-7 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000031681 Smad1 ENSMUST00000109885 ENSMUSP00000105511 TRANSLATION protein_coding - - 1 428.0 4.0 3.0 0.0 340.1 0.0 -4,-7 0.0007 3 10.636 MINOR ENSMUSG00000031681 Smad1 ENSMUST00000210678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031681 Smad1 ENSMUST00000215983 - NO_TRANSLATION retained_intron ENSMUSG00000038604 Ripor1 ENSMUST00000043531 ENSMUSP00000039966 TRANSLATION protein_coding - CCDS52660.1 1 1223.0 0.0 1.09 0.0 556.9 0.0 -4,0 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000074217 Misp3 ENSMUST00000056686 ENSMUSP00000062086 TRANSLATION protein_coding start - 3 106.0 0.0 0.0 0.0 34.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000074217 Misp3 ENSMUST00000188195 ENSMUSP00000140472 TRANSLATION protein_coding start/stop - 5 108.0 0.0 0.0 0.0 36.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000074217 Misp3 ENSMUST00000191523 ENSMUSP00000140360 TRANSLATION protein_coding stop - 3 77.0 0.0 0.0 0.0 35.7 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000074217 Misp3 ENSMUST00000185457 ENSMUSP00000140135 TRANSLATION protein_coding stop - 2 80.0 0.0 0.0 0.0 39.3 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000074217 Misp3 ENSMUST00000190457 ENSMUSP00000140089 TRANSLATION protein_coding - CCDS80905.1 1 206.0 0.0 0.0 0.4 94.4 0.0 -4,-7 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000059463 Spag11b ENSMUST00000110767 ENSMUSP00000106395 TRANSLATION protein_coding - CCDS40251.1 1 90.0 0.0 0.0 0.1 102.0 0.0 3,-2 0.0412 - 4.134 MINOR ENSMUSG00000059463 Spag11b ENSMUST00000039075 ENSMUSP00000048125 TRANSLATION protein_coding - CCDS22133.1 1 113.0 0.0 1.0 1.8 133.1 0.0 4,-1 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000057074 Ces1g ENSMUST00000044602 ENSMUSP00000037555 TRANSLATION protein_coding - CCDS22531.1 1 565.0 6.0 12.0 9.1 535.3 0.0 2,-2 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000031578 Mak16 ENSMUST00000033983 ENSMUSP00000033983 TRANSLATION protein_coding - CCDS22222.1 1 296.0 0.0 5.5 19.6 238.4 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000031578 Mak16 ENSMUST00000209991 - NO_TRANSLATION retained_intron ENSMUSG00000031578 Mak16 ENSMUST00000210450 - NO_TRANSLATION retained_intron ENSMUSG00000031578 Mak16 ENSMUST00000210278 - NO_TRANSLATION retained_intron ENSMUSG00000031516 Dctn6 ENSMUST00000033913 ENSMUSP00000033913 TRANSLATION protein_coding - CCDS22238.1 1 190.0 11.0 5.41 17.5 24.2 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000031516 Dctn6 ENSMUST00000118811 ENSMUSP00000113280 TRANSLATION protein_coding - CCDS80871.1 3 185.0 11.0 5.41 0.0 24.2 0.0 -4,-5 0.1218 4 18.0 MINOR ENSMUSG00000031516 Dctn6 ENSMUST00000152422 ENSMUSP00000120022 TRANSLATION protein_coding start - 3 163.0 11.0 4.08 0.0 24.2 0.0 -4,-5 0.0034 2 -2.0 MINOR ENSMUSG00000031516 Dctn6 ENSMUST00000142661 - NO_TRANSLATION retained_intron ENSMUSG00000031516 Dctn6 ENSMUST00000153537 - NO_TRANSLATION retained_intron ENSMUSG00000031516 Dctn6 ENSMUST00000117243 ENSMUSP00000113716 TRANSLATION protein_coding - CCDS80870.1 3 195.0 11.0 4.58 0.0 24.2 0.0 -4,-7 0.0886 2 16.338 MINOR ENSMUSG00000031516 Dctn6 ENSMUST00000155296 - NO_TRANSLATION retained_intron ENSMUSG00000031516 Dctn6 ENSMUST00000143411 ENSMUSP00000117109 TRANSLATION protein_coding stop - 3 103.0 0.0 2.58 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000031516 Dctn6 ENSMUST00000131839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031516 Dctn6 ENSMUST00000123113 - NO_TRANSLATION retained_intron ENSMUSG00000057672 Pkn1 ENSMUST00000005616 ENSMUSP00000005616 TRANSLATION protein_coding - CCDS22459.1 1 946.0 19.0 11.63 7.1 421.0 0.0 -4,-6 0.9066 19 15.876 ALTERNATIVE:1 ENSMUSG00000057672 Pkn1 ENSMUST00000132945 ENSMUSP00000115054 TRANSLATION nonsense_mediated_decay - - 1 796.0 14.0 6.8 0.0 252.1 0.0 -4,-2 0.0047 15 -2.0 MINOR ENSMUSG00000057672 Pkn1 ENSMUST00000144258 ENSMUSP00000116235 TRANSLATION protein_coding - CCDS57627.1 1 951.0 19.0 11.63 7.5 421.0 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:4 ENSMUSG00000057672 Pkn1 ENSMUST00000146057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057672 Pkn1 ENSMUST00000133195 - NO_TRANSLATION retained_intron ENSMUSG00000057672 Pkn1 ENSMUST00000124946 - NO_TRANSLATION retained_intron ENSMUSG00000057672 Pkn1 ENSMUST00000138898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057672 Pkn1 ENSMUST00000135356 - NO_TRANSLATION retained_intron ENSMUSG00000057672 Pkn1 ENSMUST00000128523 - NO_TRANSLATION retained_intron ENSMUSG00000031669 Gins3 ENSMUST00000212434 ENSMUSP00000148516 TRANSLATION protein_coding - - 2 144.0 0.0 1.5 0.0 25.9 0.0 -4,-5 0.0003 3 8.16 MINOR ENSMUSG00000031669 Gins3 ENSMUST00000034094 ENSMUSP00000034094 TRANSLATION protein_coding - CCDS22564.1 1 216.0 0.0 2.5 32.9 34.1 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000055681 Cope ENSMUST00000167850 ENSMUSP00000132976 TRANSLATION protein_coding start - 2 116.0 0.0 3.0 0.0 121.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000055681 Cope ENSMUST00000066469 ENSMUSP00000071078 TRANSLATION protein_coding - CCDS22365.1 1 308.0 0.0 8.25 8.3 437.1 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000055681 Cope ENSMUST00000150968 ENSMUSP00000119055 TRANSLATION protein_coding stop - 3 227.0 0.0 5.75 0.0 278.2 0.0 -4,-5 0.0007 7 -2.0 MINOR ENSMUSG00000055681 Cope ENSMUST00000128822 - NO_TRANSLATION retained_intron ENSMUSG00000055681 Cope ENSMUST00000134822 - NO_TRANSLATION retained_intron ENSMUSG00000055681 Cope ENSMUST00000140363 - NO_TRANSLATION retained_intron ENSMUSG00000055681 Cope ENSMUST00000168018 ENSMUSP00000130416 TRANSLATION nonsense_mediated_decay - - 5 112.0 0.0 1.75 0.0 68.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055681 Cope ENSMUST00000128003 ENSMUSP00000122888 TRANSLATION protein_coding start - 3 234.0 0.0 5.25 0.0 308.0 0.0 -4,-5 0.0007 6 -2.0 MINOR ENSMUSG00000031803 B3gnt3 ENSMUST00000034260 ENSMUSP00000034260 TRANSLATION protein_coding - CCDS22405.1 1 372.0 0.0 2.0 0.3 142.7 0.0 -2,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000031568 Rwdd4a ENSMUST00000033973 ENSMUSP00000033973 TRANSLATION protein_coding - CCDS22297.1 2 188.0 0.0 3.16 22.9 57.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000031568 Rwdd4a ENSMUST00000183107 - NO_TRANSLATION retained_intron ENSMUSG00000031568 Rwdd4a ENSMUST00000176379 ENSMUSP00000135059 TRANSLATION protein_coding stop - 5 132.0 0.0 3.16 0.0 57.3 0.0 -4,-5 0.0086 2 -2.0 MINOR ENSMUSG00000031568 Rwdd4a ENSMUST00000175692 ENSMUSP00000134999 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031568 Rwdd4a ENSMUST00000177215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044222 Defb13 ENSMUST00000060587 ENSMUSP00000060997 TRANSLATION protein_coding - CCDS40290.1 1 64.0 0.0 1.75 1.7 31.7 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000092260 Zfp963 ENSMUST00000154063 ENSMUSP00000117867 TRANSLATION protein_coding - - 3 99.0 0.0 1.6 0.0 79.3 0.0 -4,-5 0.0 - 2.202 MINOR ENSMUSG00000092260 Zfp963 ENSMUST00000130458 ENSMUSP00000119087 TRANSLATION protein_coding - CCDS52566.1 1 383.0 28.0 3.5 0.1 184.0 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000039431 Mtmr7 ENSMUST00000048890 ENSMUSP00000043367 TRANSLATION nonsense_mediated_decay - - 1 467.0 7.0 10.71 0.0 478.5 0.0 -4,-6 0.0207 15 -2.0 MINOR ENSMUSG00000039431 Mtmr7 ENSMUST00000173487 ENSMUSP00000134281 TRANSLATION protein_coding start - 5 424.0 7.0 7.85 0.0 417.4 0.0 -4,0 0.005 10 -2.0 MINOR ENSMUSG00000039431 Mtmr7 ENSMUST00000173957 ENSMUSP00000134020 TRANSLATION protein_coding stop - 5 260.0 0.0 6.16 0.0 206.9 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000039431 Mtmr7 ENSMUST00000174537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039431 Mtmr7 ENSMUST00000048898 ENSMUSP00000043851 TRANSLATION protein_coding - CCDS40324.1 1 660.0 7.0 11.51 21.2 478.5 0.0 -4,-6 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000039431 Mtmr7 ENSMUST00000174205 ENSMUSP00000134731 TRANSLATION protein_coding - - 1 498.0 7.0 11.41 1.1 478.5 0.0 -4,-6 0.2065 17 17.822 MINOR ENSMUSG00000034796 Cpne7 ENSMUST00000134235 - NO_TRANSLATION retained_intron ENSMUSG00000034796 Cpne7 ENSMUST00000123191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034796 Cpne7 ENSMUST00000131659 - NO_TRANSLATION retained_intron ENSMUSG00000034796 Cpne7 ENSMUST00000037900 ENSMUSP00000042159 TRANSLATION protein_coding - CCDS22748.1 1 557.0 5.0 11.68 1.4 410.3 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000034796 Cpne7 ENSMUST00000127431 - NO_TRANSLATION retained_intron ENSMUSG00000060924 Csmd1 ENSMUST00000133933 - NO_TRANSLATION retained_intron ENSMUSG00000060924 Csmd1 ENSMUST00000131778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060924 Csmd1 ENSMUST00000137947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060924 Csmd1 ENSMUST00000125551 - NO_TRANSLATION retained_intron ENSMUSG00000060924 Csmd1 ENSMUST00000122983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060924 Csmd1 ENSMUST00000138348 - NO_TRANSLATION retained_intron ENSMUSG00000060924 Csmd1 ENSMUST00000082104 ENSMUSP00000080751 TRANSLATION protein_coding - CCDS40244.1 1 3564.0 35.0 33.725 11.3 1998.2 0.0 3,-2 1.0 36 21.0 PRINCIPAL:1 ENSMUSG00000003812 Dnase2a ENSMUST00000148573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003812 Dnase2a ENSMUST00000134569 ENSMUSP00000117198 TRANSLATION protein_coding stop - 3 181.0 0.0 2.58 0.0 95.8 0.0 3,-2 0.0006 3 -2.0 MINOR ENSMUSG00000003812 Dnase2a ENSMUST00000003910 ENSMUSP00000003910 TRANSLATION protein_coding - CCDS22484.1 1 353.0 0.0 5.08 0.0 387.2 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000003812 Dnase2a ENSMUST00000145292 ENSMUSP00000138203 TRANSLATION protein_coding - - 5 149.0 0.0 1.33 0.0 64.7 0.0 3,-2 0.0014 - 0.0 MINOR ENSMUSG00000003812 Dnase2a ENSMUST00000128400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003812 Dnase2a ENSMUST00000155942 - NO_TRANSLATION retained_intron ENSMUSG00000003812 Dnase2a ENSMUST00000153215 - NO_TRANSLATION retained_intron ENSMUSG00000003812 Dnase2a ENSMUST00000109744 ENSMUSP00000105366 TRANSLATION protein_coding - - 1 332.0 0.0 4.75 0.0 361.6 0.0 -4,-6 0.012 7 9.804 MINOR ENSMUSG00000003812 Dnase2a ENSMUST00000135219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044743 Defb10 ENSMUST00000054162 ENSMUSP00000061533 TRANSLATION protein_coding - CCDS40285.1 1 73.0 0.0 1.0 0.1 41.8 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060208 Defa17 ENSMUST00000079528 ENSMUSP00000078485 TRANSLATION protein_coding - CCDS52513.1 1 93.0 0.0 1.0 0.1 121.8 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038365 Fbxo25 ENSMUST00000209913 ENSMUSP00000147467 TRANSLATION protein_coding - CCDS85507.1 1 365.0 0.0 5.5 20.1 0.0 0.0 -4,-5 1.0 4 9.34 PRINCIPAL:4 ENSMUSG00000038365 Fbxo25 ENSMUST00000210280 ENSMUSP00000147874 TRANSLATION protein_coding start - 3 201.0 0.0 3.75 0.0 0.0 0.0 -4,-5 0.0036 2 -2.0 MINOR ENSMUSG00000038365 Fbxo25 ENSMUST00000209310 - NO_TRANSLATION retained_intron ENSMUSG00000038365 Fbxo25 ENSMUST00000043520 ENSMUSP00000039544 TRANSLATION protein_coding - CCDS22118.1 1 357.0 0.0 5.83 14.8 0.0 0.0 -4,-5 0.9878 4 8.892 ALTERNATIVE:1 ENSMUSG00000038365 Fbxo25 ENSMUST00000209290 - NO_TRANSLATION retained_intron ENSMUSG00000115067 Dpep2 ENSMUST00000081998 ENSMUSP00000080659 TRANSLATION protein_coding,RT start - 1 588.0 7.0 7.625 0.0 340.7 0.0 -4,-5 0.1976 - -2.0 MINOR ENSMUSG00000115067 Dpep2 ENSMUST00000227363 ENSMUSP00000154250 TRANSLATION protein_coding - CCDS22625.1 - 578.0 7.0 7.625 0.0 340.7 0.0 -4,-5 0.9351 - 18.0 PRINCIPAL:1 ENSMUSG00000031458 Coprs ENSMUST00000210188 - NO_TRANSLATION retained_intron ENSMUSG00000031458 Coprs ENSMUST00000210249 - NO_TRANSLATION retained_intron ENSMUSG00000031458 Coprs ENSMUST00000033839 ENSMUSP00000033839 TRANSLATION protein_coding - CCDS40237.1 1 173.0 0.0 0.0 1.1 279.9 0.0 -4,-5 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000031458 Coprs ENSMUST00000209371 ENSMUSP00000148034 TRANSLATION protein_coding - - 3 80.0 0.0 0.0 0.0 188.3 0.0 -4,-5 0.0 - 0.504 MINOR ENSMUSG00000031458 Coprs ENSMUST00000210749 - NO_TRANSLATION retained_intron ENSMUSG00000031917 Nip7 ENSMUST00000170962 ENSMUSP00000126153 TRANSLATION protein_coding - CCDS52665.1 3 133.0 0.0 3.25 1.0 0.0 0.0 -4,-5 0.0864 5 4.002 MINOR ENSMUSG00000031917 Nip7 ENSMUST00000212281 - NO_TRANSLATION retained_intron ENSMUSG00000031917 Nip7 ENSMUST00000034392 ENSMUSP00000034392 TRANSLATION protein_coding - CCDS22644.1 1 180.0 0.0 4.25 32.7 0.0 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000031843 Mphosph6 ENSMUST00000213070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031843 Mphosph6 ENSMUST00000034303 ENSMUSP00000034303 TRANSLATION protein_coding - CCDS22702.1 1 161.0 0.0 3.1 20.4 140.8 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031843 Mphosph6 ENSMUST00000211818 - NO_TRANSLATION retained_intron ENSMUSG00000007950 Abhd8 ENSMUST00000212503 - NO_TRANSLATION retained_intron ENSMUSG00000007950 Abhd8 ENSMUST00000008094 ENSMUSP00000008094 TRANSLATION protein_coding - CCDS40382.1 1 439.0 10.0 1.0 0.1 64.9 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000007950 Abhd8 ENSMUST00000212321 - NO_TRANSLATION retained_intron ENSMUSG00000038457 Tmem255b ENSMUST00000167505 ENSMUSP00000130504 TRANSLATION protein_coding - CCDS52486.1 1 328.0 0.0 0.0 6.1 533.8 4.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000038457 Tmem255b ENSMUST00000167071 ENSMUSP00000127421 TRANSLATION protein_coding - CCDS52487.1 1 307.0 0.0 0.0 0.0 362.6 4.0 -4,-7 0.1306 - 0.0 MINOR ENSMUSG00000038457 Tmem255b ENSMUST00000209950 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038457 Tmem255b ENSMUST00000211356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038457 Tmem255b ENSMUST00000210804 ENSMUSP00000147581 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000039478 Micu3 ENSMUST00000136835 ENSMUSP00000118883 TRANSLATION protein_coding start - 5 262.0 9.0 5.0185 0.0 56.2 0.0 -4,-5 0.0128 6 -2.0 MINOR ENSMUSG00000039478 Micu3 ENSMUST00000068999 ENSMUSP00000070241 TRANSLATION protein_coding - CCDS52545.1 5 523.0 9.0 8.0985 1.4 54.8 0.0 -4,0 0.8674 9 18.85 PRINCIPAL:1 ENSMUSG00000039478 Micu3 ENSMUST00000132481 - NO_TRANSLATION retained_intron ENSMUSG00000071169 Defb46 ENSMUST00000095436 ENSMUSP00000093087 TRANSLATION protein_coding - CCDS40256.1 1 57.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.9479 - 0.0 PRINCIPAL:1 ENSMUSG00000031543 Ank1 ENSMUST00000173248 ENSMUSP00000133322 TRANSLATION protein_coding - CCDS72102.1 1 1852.0 0.0 32.08 0.8 703.7 0.0 -4,-2 0.7271 56 7.4 ALTERNATIVE:2 ENSMUSG00000031543 Ank1 ENSMUST00000121075 ENSMUSP00000112966 TRANSLATION protein_coding - CCDS80864.1 1 155.0 0.0 0.0 8.3 0.0 0.0 3,-2 0.8352 3 3.0 MINOR ENSMUSG00000031543 Ank1 ENSMUST00000118733 ENSMUSP00000112850 TRANSLATION protein_coding - CCDS72103.1 1 1878.0 0.0 32.08 1.1 709.0 0.0 -4,-2 1.0 56 7.442 PRINCIPAL:2 ENSMUSG00000031543 Ank1 ENSMUST00000173573 ENSMUSP00000133901 TRANSLATION nonsense_mediated_decay - - 1 1057.0 0.0 23.016 0.0 629.9 0.0 -4,-2 0.1009 27 -2.0 MINOR ENSMUSG00000031543 Ank1 ENSMUST00000117270 ENSMUSP00000113495 TRANSLATION protein_coding - - 5 1883.0 0.0 31.78 0.4 709.0 0.0 -4,-5 0.5585 55 6.8 ALTERNATIVE:2 ENSMUSG00000031543 Ank1 ENSMUST00000110688 ENSMUSP00000106316 TRANSLATION protein_coding - CCDS72099.1 1 1744.0 0.0 31.78 0.4 703.7 0.0 -4,-5 0.514 56 6.8 ALTERNATIVE:2 ENSMUSG00000031543 Ank1 ENSMUST00000117296 ENSMUSP00000113656 TRANSLATION protein_coding - CCDS72101.1 1 1887.0 0.0 31.78 0.7 703.7 0.0 -4,-7 0.702 55 7.4 ALTERNATIVE:2 ENSMUSG00000031543 Ank1 ENSMUST00000121802 ENSMUSP00000113571 TRANSLATION protein_coding - CCDS52523.1 1 1907.0 0.0 31.78 0.4 703.7 0.0 -4,-5 0.6355 56 7.4 ALTERNATIVE:2 ENSMUSG00000031543 Ank1 ENSMUST00000174435 ENSMUSP00000133668 TRANSLATION protein_coding stop - 5 109.0 0.0 0.0 2.9 0.0 0.0 3,-2 0.1105 2 -2.0 MINOR ENSMUSG00000031543 Ank1 ENSMUST00000152511 ENSMUSP00000116533 TRANSLATION protein_coding start - 1 1098.0 0.0 20.78 0.0 439.9 0.0 -4,-2 0.0105 34 -2.0 MINOR ENSMUSG00000031543 Ank1 ENSMUST00000033947 ENSMUSP00000033947 TRANSLATION protein_coding - CCDS80865.1 1 156.0 0.0 0.0 6.4 0.0 0.0 3,-2 0.6511 2 2.22 MINOR ENSMUSG00000031543 Ank1 ENSMUST00000135206 - NO_TRANSLATION retained_intron ENSMUSG00000031543 Ank1 ENSMUST00000130311 - NO_TRANSLATION retained_intron ENSMUSG00000031543 Ank1 ENSMUST00000141784 ENSMUSP00000117966 TRANSLATION protein_coding - - 5 1863.0 0.0 31.78 0.0 709.0 0.0 -4,-7 0.4328 54 6.8 ALTERNATIVE:2 ENSMUSG00000031543 Ank1 ENSMUST00000123418 ENSMUSP00000121785 TRANSLATION nonsense_mediated_decay - - 1 572.0 0.0 13.3 0.0 358.0 0.0 -4,-2 0.0002 19 -2.0 MINOR ENSMUSG00000031543 Ank1 ENSMUST00000117662 ENSMUSP00000113531 TRANSLATION protein_coding - CCDS72100.1 1 1862.0 0.0 31.78 0.0 709.0 0.0 -4,-7 0.6423 55 6.8 ALTERNATIVE:2 ENSMUSG00000031543 Ank1 ENSMUST00000084038 ENSMUSP00000081051 TRANSLATION protein_coding - CCDS22187.1 1 1848.0 0.0 32.08 0.8 703.7 0.0 -4,-2 0.7271 56 7.4 ALTERNATIVE:2 ENSMUSG00000031659 Adcy7 ENSMUST00000098521 ENSMUSP00000096122 TRANSLATION protein_coding - CCDS22509.1 1 1099.0 8.0 8.96 0.4 573.2 13.0 -4,-7 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000031659 Adcy7 ENSMUST00000211311 - NO_TRANSLATION retained_intron ENSMUSG00000031659 Adcy7 ENSMUST00000210688 ENSMUSP00000148207 TRANSLATION nonsense_mediated_decay start - 1 428.0 4.0 3.5 0.0 264.2 5.0 -4,-5 0.0054 3 -2.0 MINOR ENSMUSG00000031659 Adcy7 ENSMUST00000169037 ENSMUSP00000130594 TRANSLATION protein_coding - CCDS22509.1 1 1099.0 8.0 8.96 0.4 573.2 13.0 -4,-7 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000031659 Adcy7 ENSMUST00000168545 ENSMUSP00000129252 TRANSLATION protein_coding - CCDS22509.1 1 1099.0 8.0 8.96 0.4 573.2 13.0 -4,-7 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000031659 Adcy7 ENSMUST00000171456 ENSMUSP00000132528 TRANSLATION protein_coding - CCDS22509.1 1 1099.0 8.0 8.96 0.4 573.2 13.0 -4,-7 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000031902 Nfatc3 ENSMUST00000211991 ENSMUSP00000148556 TRANSLATION protein_coding - - 1 1060.0 0.0 5.1 0.0 169.1 0.0 -2,2 0.3546 10 8.0 ALTERNATIVE:2 ENSMUSG00000031902 Nfatc3 ENSMUST00000212691 - NO_TRANSLATION retained_intron ENSMUSG00000031902 Nfatc3 ENSMUST00000212936 - NO_TRANSLATION retained_intron ENSMUSG00000031902 Nfatc3 ENSMUST00000212577 - NO_TRANSLATION retained_intron ENSMUSG00000031902 Nfatc3 ENSMUST00000109308 ENSMUSP00000104931 TRANSLATION protein_coding - CCDS22628.1 1 1076.0 0.0 5.1 0.1 169.1 0.0 -4,-5 1.0 12 8.0 PRINCIPAL:2 ENSMUSG00000031902 Nfatc3 ENSMUST00000212671 - NO_TRANSLATION retained_intron ENSMUSG00000031902 Nfatc3 ENSMUST00000212742 ENSMUSP00000148551 TRANSLATION protein_coding - - 1 1068.0 0.0 5.1 0.0 169.1 0.0 -2,2 0.3852 12 8.0 ALTERNATIVE:2 ENSMUSG00000031844 Hsd17b2 ENSMUST00000212998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031844 Hsd17b2 ENSMUST00000034304 ENSMUSP00000034304 TRANSLATION protein_coding - CCDS40491.1 1 381.0 26.0 4.4 0.4 159.5 0.0 -1,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000031844 Hsd17b2 ENSMUST00000212052 ENSMUSP00000148323 TRANSLATION nonsense_mediated_decay start - 2 124.0 0.0 0.4 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000062380 Tubb3 ENSMUST00000212743 ENSMUSP00000148662 TRANSLATION protein_coding - - 3 122.0 4.0 2.5 0.0 76.0 0.0 -4,-5 0.0 2 1.998 MINOR ENSMUSG00000062380 Tubb3 ENSMUST00000071134 ENSMUSP00000071134 TRANSLATION protein_coding - CCDS22757.1 1 450.0 16.0 4.5 15.2 376.9 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000000740 Rpl13 ENSMUST00000132275 - NO_TRANSLATION retained_intron ENSMUSG00000000740 Rpl13 ENSMUST00000000756 ENSMUSP00000000756 TRANSLATION protein_coding - CCDS22747.1 1 211.0 0.0 4.5 36.2 277.0 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000000740 Rpl13 ENSMUST00000152444 - NO_TRANSLATION retained_intron ENSMUSG00000000740 Rpl13 ENSMUST00000212887 - NO_TRANSLATION retained_intron ENSMUSG00000000740 Rpl13 ENSMUST00000129311 - NO_TRANSLATION retained_intron ENSMUSG00000090336 Cfap97d2 ENSMUST00000214337 ENSMUSP00000153486 TRANSLATION protein_coding - - 5 169.0 0.0 2.95 0.1 51.6 0.0 -4,-7 0.7368 - 8.0 PRINCIPAL:1 ENSMUSG00000090336 Cfap97d2 ENSMUST00000166277 ENSMUSP00000127953 TRANSLATION protein_coding - CCDS52489.1 1 98.0 0.0 2.75 0.0 48.6 0.0 -4,-2 0.047 - 5.592 MINOR ENSMUSG00000090336 Cfap97d2 ENSMUST00000209042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090336 Cfap97d2 ENSMUST00000208283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096188 Cmtm4 ENSMUST00000179802 ENSMUSP00000137332 TRANSLATION protein_coding - CCDS22578.1 1 208.0 0.0 3.0 0.0 61.2 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000000792 Slc5a5 ENSMUST00000000809 ENSMUSP00000000809 TRANSLATION protein_coding - CCDS22385.1 1 618.0 0.0 5.15 0.4 140.8 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000031731 Ap1g1 ENSMUST00000172892 - NO_TRANSLATION retained_intron ENSMUSG00000031731 Ap1g1 ENSMUST00000034171 ENSMUSP00000034171 TRANSLATION protein_coding - CCDS80929.1 1 822.0 5.0 18.2 32.5 639.6 0.0 -4,-2 1.0 20 17.0 PRINCIPAL:4 ENSMUSG00000031731 Ap1g1 ENSMUST00000173200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031731 Ap1g1 ENSMUST00000093157 ENSMUSP00000090844 TRANSLATION protein_coding - CCDS40475.1 5 825.0 5.0 18.2 32.5 636.5 0.0 -4,-2 0.9849 20 17.0 ALTERNATIVE:1 ENSMUSG00000031731 Ap1g1 ENSMUST00000179104 ENSMUSP00000136724 TRANSLATION protein_coding - - - 49.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000031731 Ap1g1 ENSMUST00000173476 - NO_TRANSLATION retained_intron ENSMUSG00000031835 Mbtps1 ENSMUST00000212813 - NO_TRANSLATION retained_intron ENSMUSG00000031835 Mbtps1 ENSMUST00000212244 - NO_TRANSLATION retained_intron ENSMUSG00000031835 Mbtps1 ENSMUST00000212601 - NO_TRANSLATION retained_intron ENSMUSG00000031835 Mbtps1 ENSMUST00000098362 ENSMUSP00000095965 TRANSLATION protein_coding - CCDS22707.1 1 1052.0 3.0 4.43 14.8 135.1 0.0 3,-2 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000031835 Mbtps1 ENSMUST00000212736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031835 Mbtps1 ENSMUST00000212082 - NO_TRANSLATION retained_intron ENSMUSG00000031835 Mbtps1 ENSMUST00000212685 - NO_TRANSLATION retained_intron ENSMUSG00000031835 Mbtps1 ENSMUST00000081381 ENSMUSP00000080117 TRANSLATION protein_coding - CCDS22707.1 1 1052.0 3.0 4.43 14.8 135.1 0.0 3,-2 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000031835 Mbtps1 ENSMUST00000212290 - NO_TRANSLATION retained_intron ENSMUSG00000079842 Spag11a ENSMUST00000058955 ENSMUSP00000055391 TRANSLATION protein_coding - CCDS40252.1 1 69.0 0.0 1.0 1.6 40.3 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000040236 Trappc5 ENSMUST00000044857 ENSMUSP00000036541 TRANSLATION protein_coding - CCDS22070.1 1 188.0 0.0 1.0 33.1 119.3 0.0 -1,2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000040236 Trappc5 ENSMUST00000207787 ENSMUSP00000146674 TRANSLATION protein_coding - CCDS22070.1 - 188.0 0.0 1.0 33.1 119.3 0.0 -1,2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000041515 Irf8 ENSMUST00000047737 ENSMUSP00000040245 TRANSLATION protein_coding - CCDS22721.1 1 424.0 0.0 4.24 18.8 361.2 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000041515 Irf8 ENSMUST00000162001 ENSMUSP00000125029 TRANSLATION protein_coding - CCDS22721.1 1 424.0 0.0 4.24 18.8 361.2 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000041515 Irf8 ENSMUST00000160388 - NO_TRANSLATION retained_intron ENSMUSG00000041515 Irf8 ENSMUST00000162658 ENSMUSP00000125443 TRANSLATION protein_coding stop - 3 151.0 0.0 1.1 0.0 90.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000041515 Irf8 ENSMUST00000162775 - NO_TRANSLATION retained_intron ENSMUSG00000041515 Irf8 ENSMUST00000160943 ENSMUSP00000125447 TRANSLATION protein_coding - - 5 333.0 0.0 3.24 0.0 282.7 0.0 -4,-7 0.0 5 5.292 MINOR ENSMUSG00000041515 Irf8 ENSMUST00000160594 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031848 Lsm4 ENSMUST00000210987 ENSMUSP00000147637 TRANSLATION protein_coding - - 5 105.0 3.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 6.09 MINOR ENSMUSG00000031848 Lsm4 ENSMUST00000034311 ENSMUSP00000034311 TRANSLATION protein_coding - CCDS40374.1 1 138.0 5.0 2.91 22.1 60.9 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000031848 Lsm4 ENSMUST00000153689 - NO_TRANSLATION retained_intron ENSMUSG00000031848 Lsm4 ENSMUST00000146972 ENSMUSP00000121019 TRANSLATION protein_coding stop - 5 96.0 5.0 2.38 0.0 45.1 0.0 -4,-5 0.0015 3 -2.0 MINOR ENSMUSG00000031848 Lsm4 ENSMUST00000210071 ENSMUSP00000147320 TRANSLATION protein_coding - - 5 103.0 3.0 1.66 1.6 0.0 0.0 -4,-5 0.0271 - 6.532 MINOR ENSMUSG00000031730 Dhodh ENSMUST00000146064 - NO_TRANSLATION retained_intron ENSMUSG00000031730 Dhodh ENSMUST00000133353 ENSMUSP00000114190 TRANSLATION nonsense_mediated_decay start - 5 96.0 6.0 1.53 0.0 103.5 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000031730 Dhodh ENSMUST00000125779 - NO_TRANSLATION retained_intron ENSMUSG00000031730 Dhodh ENSMUST00000125222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031730 Dhodh ENSMUST00000150804 ENSMUSP00000115549 TRANSLATION nonsense_mediated_decay start - 5 167.0 9.0 3.255 0.0 102.1 0.0 -3,-6 0.0 7 -2.0 MINOR ENSMUSG00000031730 Dhodh ENSMUST00000142106 - NO_TRANSLATION retained_intron ENSMUSG00000031730 Dhodh ENSMUST00000123605 ENSMUSP00000115934 TRANSLATION protein_coding - CCDS40471.1 1 395.0 29.0 8.13 12.5 386.3 0.0 -3,-7 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000031730 Dhodh ENSMUST00000124138 - NO_TRANSLATION retained_intron ENSMUSG00000031730 Dhodh ENSMUST00000143900 ENSMUSP00000117980 TRANSLATION protein_coding - - 5 277.0 18.0 5.63 0.0 237.0 0.0 -3,-7 0.0 11 1.002 MINOR ENSMUSG00000031730 Dhodh ENSMUST00000128350 ENSMUSP00000118612 TRANSLATION protein_coding stop - 2 103.0 8.0 2.08 0.0 95.7 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000031730 Dhodh ENSMUST00000131107 - NO_TRANSLATION retained_intron ENSMUSG00000037300 Ttc13 ENSMUST00000231984 ENSMUSP00000156040 TRANSLATION protein_coding - - - 715.0 0.0 15.08 1.1 33.6 0.0 2,-2 0.0064 7 3.628 MINOR ENSMUSG00000037300 Ttc13 ENSMUST00000118134 ENSMUSP00000113383 TRANSLATION protein_coding - - 5 792.0 0.0 17.41 1.1 75.1 0.0 2,-2 0.1054 8 9.376 MINOR ENSMUSG00000037300 Ttc13 ENSMUST00000140350 - NO_TRANSLATION retained_intron ENSMUSG00000037300 Ttc13 ENSMUST00000041614 ENSMUSP00000038484 TRANSLATION protein_coding - - 2 759.0 0.0 14.08 0.0 33.6 0.0 2,-2 0.0202 7 2.628 MINOR ENSMUSG00000037300 Ttc13 ENSMUST00000131633 - NO_TRANSLATION retained_intron ENSMUSG00000037300 Ttc13 ENSMUST00000126674 - NO_TRANSLATION retained_intron ENSMUSG00000037300 Ttc13 ENSMUST00000117624 ENSMUSP00000114043 TRANSLATION protein_coding - - 5 738.0 0.0 15.83 0.3 33.6 0.0 2,-2 0.0208 7 2.628 MINOR ENSMUSG00000037300 Ttc13 ENSMUST00000215563 ENSMUSP00000149994 TRANSLATION protein_coding start/stop - 1 68.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037300 Ttc13 ENSMUST00000128390 - NO_TRANSLATION retained_intron ENSMUSG00000037300 Ttc13 ENSMUST00000214828 ENSMUSP00000149848 TRANSLATION protein_coding - - 5 844.0 0.0 19.16 1.1 76.7 0.0 2,-2 0.8746 9 13.0 PRINCIPAL:1 ENSMUSG00000037300 Ttc13 ENSMUST00000130344 - NO_TRANSLATION retained_intron ENSMUSG00000037300 Ttc13 ENSMUST00000127167 - NO_TRANSLATION retained_intron ENSMUSG00000031711 Zfp330 ENSMUST00000209601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031711 Zfp330 ENSMUST00000209587 - NO_TRANSLATION retained_intron ENSMUSG00000031711 Zfp330 ENSMUST00000211462 ENSMUSP00000147955 TRANSLATION nonsense_mediated_decay - - 3 45.0 0.0 1.0 0.0 55.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031711 Zfp330 ENSMUST00000210958 - NO_TRANSLATION retained_intron ENSMUSG00000031711 Zfp330 ENSMUST00000034147 ENSMUSP00000034147 TRANSLATION protein_coding - CCDS22447.1 1 316.0 8.0 6.33 22.7 540.5 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000031711 Zfp330 ENSMUST00000209727 - NO_TRANSLATION retained_intron ENSMUSG00000031711 Zfp330 ENSMUST00000211451 - NO_TRANSLATION retained_intron ENSMUSG00000071076 Jund ENSMUST00000095267 ENSMUSP00000092901 TRANSLATION protein_coding - CCDS40375.1 - 341.0 0.0 0.2 0.4 323.9 0.0 -3,-4 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000069922 Ces3a ENSMUST00000093223 ENSMUSP00000090911 TRANSLATION protein_coding - CCDS52652.1 1 524.0 6.0 10.5 0.0 482.5 0.0 0,-3 0.0211 5 12.39 MINOR ENSMUSG00000069922 Ces3a ENSMUST00000212481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069922 Ces3a ENSMUST00000213054 - NO_TRANSLATION retained_intron ENSMUSG00000069922 Ces3a ENSMUST00000212329 - NO_TRANSLATION retained_intron ENSMUSG00000069922 Ces3a ENSMUST00000093222 ENSMUSP00000090910 TRANSLATION protein_coding - CCDS52651.1 1 571.0 7.0 11.5 3.3 528.4 0.0 0,-3 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000034361 Cpne2 ENSMUST00000156894 - NO_TRANSLATION retained_intron ENSMUSG00000034361 Cpne2 ENSMUST00000212550 ENSMUSP00000148447 TRANSLATION nonsense_mediated_decay start - 3 61.0 4.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034361 Cpne2 ENSMUST00000156377 - NO_TRANSLATION retained_intron ENSMUSG00000034361 Cpne2 ENSMUST00000136550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034361 Cpne2 ENSMUST00000048653 ENSMUSP00000045755 TRANSLATION protein_coding - CCDS22543.1 1 548.0 9.0 12.75 0.0 389.7 0.0 -4,-5 0.4676 11 18.0 MINOR ENSMUSG00000034361 Cpne2 ENSMUST00000109537 ENSMUSP00000105163 TRANSLATION protein_coding - - 1 547.0 9.0 12.75 17.9 388.8 0.0 -4,-5 1.0 11 21.946 PRINCIPAL:1 ENSMUSG00000033763 Mtss2 ENSMUST00000141527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033763 Mtss2 ENSMUST00000149273 ENSMUSP00000119495 TRANSLATION protein_coding start/stop - 3 289.0 0.0 3.85 0.0 189.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000033763 Mtss2 ENSMUST00000052457 ENSMUSP00000050211 TRANSLATION protein_coding - CCDS22664.1 1 715.0 0.0 7.43 6.0 347.9 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000033763 Mtss2 ENSMUST00000141302 ENSMUSP00000116518 TRANSLATION protein_coding start/stop - 5 364.0 0.0 3.85 0.0 181.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000033763 Mtss2 ENSMUST00000133848 - NO_TRANSLATION retained_intron ENSMUSG00000033763 Mtss2 ENSMUST00000144041 ENSMUSP00000115220 TRANSLATION protein_coding - CCDS80930.1 1 653.0 0.0 5.43 0.7 272.5 0.0 -4,-2 0.0188 9 3.474 MINOR ENSMUSG00000031647 Mfap3l ENSMUST00000034066 ENSMUSP00000034066 TRANSLATION protein_coding - CCDS22321.1 1 409.0 0.0 0.32 6.4 49.1 1.0 0,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000031647 Mfap3l ENSMUST00000161702 ENSMUSP00000124330 TRANSLATION protein_coding - CCDS22321.1 1 409.0 0.0 0.32 6.4 49.1 1.0 0,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000031647 Mfap3l ENSMUST00000160719 ENSMUSP00000125139 TRANSLATION protein_coding - CCDS22321.1 1 409.0 0.0 0.32 6.4 49.1 1.0 0,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000031647 Mfap3l ENSMUST00000161421 ENSMUSP00000124136 TRANSLATION protein_coding - CCDS80877.1 1 306.0 0.0 0.0 5.5 0.0 1.0 -4,-6 0.4278 2 1.666 MINOR ENSMUSG00000054033 Adam39 ENSMUST00000066814 ENSMUSP00000065783 TRANSLATION protein_coding - CCDS40326.1 1 756.0 16.0 0.32 0.0 404.0 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000023235 Ccl25 ENSMUST00000155797 ENSMUSP00000140747 TRANSLATION nonsense_mediated_decay - - 2 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023235 Ccl25 ENSMUST00000136191 ENSMUSP00000117515 TRANSLATION protein_coding stop - 3 119.0 0.0 1.0 0.0 34.5 0.0 -4,-7 0.0035 - -2.0 MINOR ENSMUSG00000023235 Ccl25 ENSMUST00000024004 ENSMUSP00000024004 TRANSLATION protein_coding - CCDS22085.1 1 144.0 0.0 3.0 0.4 57.4 0.0 4,-1 0.4573 1 8.0 ALTERNATIVE:2 ENSMUSG00000023235 Ccl25 ENSMUST00000110982 ENSMUSP00000106610 TRANSLATION protein_coding - - 1 134.0 0.0 3.0 0.0 57.4 0.0 4,-1 0.8089 1 8.0 PRINCIPAL:2 ENSMUSG00000023235 Ccl25 ENSMUST00000069762 ENSMUSP00000064658 TRANSLATION non_stop_decay stop - 2 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0024 - -2.0 MINOR ENSMUSG00000023235 Ccl25 ENSMUST00000153254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023235 Ccl25 ENSMUST00000207925 - NO_TRANSLATION retained_intron ENSMUSG00000023235 Ccl25 ENSMUST00000098949 ENSMUSP00000096548 TRANSLATION nonsense_mediated_decay - - 2 89.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023235 Ccl25 ENSMUST00000127460 ENSMUSP00000120719 TRANSLATION protein_coding - - 5 228.0 0.0 3.0 0.0 57.4 0.0 -4,-6 0.0238 1 8.0 ALTERNATIVE:2 ENSMUSG00000023235 Ccl25 ENSMUST00000207839 - NO_TRANSLATION retained_intron ENSMUSG00000014907 Naf1 ENSMUST00000118009 ENSMUSP00000112640 TRANSLATION protein_coding - CCDS52562.1 1 597.0 0.0 4.25 0.0 151.5 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000014907 Naf1 ENSMUST00000212916 ENSMUSP00000148293 TRANSLATION nonsense_mediated_decay start - 5 122.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000003573 Homer3 ENSMUST00000155711 - NO_TRANSLATION retained_intron ENSMUSG00000003573 Homer3 ENSMUST00000003669 ENSMUSP00000003669 TRANSLATION protein_coding - CCDS52569.1 1 359.0 8.0 5.414 17.1 124.1 0.0 -4,-6 0.9896 11 18.0 ALTERNATIVE:1 ENSMUSG00000003573 Homer3 ENSMUST00000140212 ENSMUSP00000117033 TRANSLATION protein_coding - CCDS22363.1 1 356.0 8.0 5.414 17.1 124.1 0.0 -4,-6 1.0 11 18.0 PRINCIPAL:4 ENSMUSG00000003573 Homer3 ENSMUST00000135368 ENSMUSP00000137560 TRANSLATION protein_coding start - 3 93.0 0.0 1.45 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000003573 Homer3 ENSMUST00000110124 ENSMUSP00000105751 TRANSLATION protein_coding - CCDS52569.1 5 359.0 8.0 5.414 17.1 124.1 0.0 -4,-6 0.9896 11 18.0 ALTERNATIVE:1 ENSMUSG00000003573 Homer3 ENSMUST00000087467 ENSMUSP00000084735 TRANSLATION protein_coding - - 1 122.0 8.0 2.0 0.0 115.1 0.0 -4,-6 0.0007 2 7.0 MINOR ENSMUSG00000003573 Homer3 ENSMUST00000135692 - NO_TRANSLATION retained_intron ENSMUSG00000003573 Homer3 ENSMUST00000143528 - NO_TRANSLATION retained_intron ENSMUSG00000031737 Irx5 ENSMUST00000210246 ENSMUSP00000147339 TRANSLATION protein_coding - - 5 516.0 0.0 0.8 0.0 56.9 0.0 -4,-7 0.0604 - 12.0 MINOR ENSMUSG00000031737 Irx5 ENSMUST00000034184 ENSMUSP00000034184 TRANSLATION protein_coding - CCDS22522.1 1 484.0 0.0 0.8 7.1 56.9 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031732 Phlpp2 ENSMUST00000034175 ENSMUSP00000034175 TRANSLATION protein_coding - - 1 1320.0 3.0 7.38 7.9 209.9 0.0 -4,-7 0.92 13 13.0 ALTERNATIVE:1 ENSMUSG00000031732 Phlpp2 ENSMUST00000179721 ENSMUSP00000136166 TRANSLATION protein_coding - CCDS57644.1 1 1355.0 3.0 7.38 5.6 209.9 0.0 -4,-5 1.0 13 12.334 PRINCIPAL:4 ENSMUSG00000031732 Phlpp2 ENSMUST00000154262 - NO_TRANSLATION retained_intron ENSMUSG00000084128 Esrp2 ENSMUST00000131020 - NO_TRANSLATION retained_intron ENSMUSG00000084128 Esrp2 ENSMUST00000150527 - NO_TRANSLATION retained_intron ENSMUSG00000084128 Esrp2 ENSMUST00000125955 - NO_TRANSLATION retained_intron ENSMUSG00000084128 Esrp2 ENSMUST00000155164 - NO_TRANSLATION retained_intron ENSMUSG00000084128 Esrp2 ENSMUST00000115979 ENSMUSP00000111639 TRANSLATION protein_coding - CCDS22629.1 1 717.0 0.0 4.6 0.1 0.0 0.0 -4,-7 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000084128 Esrp2 ENSMUST00000139559 - NO_TRANSLATION retained_intron ENSMUSG00000084128 Esrp2 ENSMUST00000146940 ENSMUSP00000123114 TRANSLATION protein_coding stop - 1 592.0 0.0 4.6 0.0 0.0 0.0 -4,-7 0.0722 5 -2.0 MINOR ENSMUSG00000084128 Esrp2 ENSMUST00000142050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000084128 Esrp2 ENSMUST00000139319 - NO_TRANSLATION retained_intron ENSMUSG00000060427 Zfp868 ENSMUST00000140522 - NO_TRANSLATION retained_intron ENSMUSG00000060427 Zfp868 ENSMUST00000121886 ENSMUSP00000113952 TRANSLATION protein_coding - CCDS22347.1 1 422.0 36.0 1.3 0.4 248.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000060427 Zfp868 ENSMUST00000150118 - NO_TRANSLATION retained_intron ENSMUSG00000060427 Zfp868 ENSMUST00000074982 ENSMUSP00000074510 TRANSLATION protein_coding - CCDS22347.1 1 422.0 36.0 1.3 0.4 248.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095941 Tle7 ENSMUST00000219454 ENSMUSP00000151787 TRANSLATION protein_coding - - 5 437.0 0.0 5.75 3.2 0.0 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000095941 Tle7 ENSMUST00000213641 ENSMUSP00000149275 TRANSLATION protein_coding - - 5 430.0 0.0 5.75 0.1 0.0 0.0 -4,-6 0.2104 - 6.0 ALTERNATIVE:2 ENSMUSG00000031853 Map3k21 ENSMUST00000034316 ENSMUSP00000034316 TRANSLATION protein_coding - CCDS40519.1 1 1002.0 18.0 3.48 0.1 262.7 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000041949 Tango6 ENSMUST00000048359 ENSMUSP00000043953 TRANSLATION protein_coding - CCDS22639.1 1 1079.0 0.0 0.0 0.0 150.1 0.0 -3,-6 1.0 15 6.0 PRINCIPAL:1 ENSMUSG00000041949 Tango6 ENSMUST00000211979 ENSMUSP00000148400 TRANSLATION protein_coding - - 1 481.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0023 11 0.0 MINOR ENSMUSG00000041949 Tango6 ENSMUST00000212764 - NO_TRANSLATION retained_intron ENSMUSG00000025316 Banp ENSMUST00000026354 ENSMUSP00000026354 TRANSLATION protein_coding - CCDS72176.1 1 509.0 0.0 0.0 0.4 32.2 0.0 -4,-5 0.3319 7 6.0 MINOR ENSMUSG00000025316 Banp ENSMUST00000172628 ENSMUSP00000133342 TRANSLATION protein_coding stop - 5 265.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0009 4 -2.0 MINOR ENSMUSG00000025316 Banp ENSMUST00000170857 ENSMUSP00000132095 TRANSLATION protein_coding - CCDS40502.1 1 548.0 0.0 0.0 0.4 32.2 0.0 -4,-5 0.1727 9 6.0 MINOR ENSMUSG00000025316 Banp ENSMUST00000173753 - NO_TRANSLATION retained_intron ENSMUSG00000025316 Banp ENSMUST00000172513 - NO_TRANSLATION retained_intron ENSMUSG00000025316 Banp ENSMUST00000093078 ENSMUSP00000090766 TRANSLATION protein_coding - CCDS72177.1 1 506.0 0.0 0.0 0.4 32.2 0.0 -4,-5 0.6108 7 6.0 MINOR ENSMUSG00000025316 Banp ENSMUST00000173925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025316 Banp ENSMUST00000173254 ENSMUSP00000133783 TRANSLATION protein_coding - - 5 506.0 0.0 0.0 12.5 32.2 0.0 -4,-5 1.0 9 9.0 PRINCIPAL:1 ENSMUSG00000025316 Banp ENSMUST00000174753 ENSMUSP00000134058 TRANSLATION protein_coding stop - 3 126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025316 Banp ENSMUST00000174327 - NO_TRANSLATION retained_intron ENSMUSG00000025316 Banp ENSMUST00000173201 - NO_TRANSLATION retained_intron ENSMUSG00000025316 Banp ENSMUST00000172681 ENSMUSP00000134336 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025316 Banp ENSMUST00000173396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025316 Banp ENSMUST00000174445 ENSMUSP00000134513 TRANSLATION nonsense_mediated_decay - - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025316 Banp ENSMUST00000167711 ENSMUSP00000132434 TRANSLATION protein_coding start - 5 321.0 0.0 0.0 0.0 32.2 0.0 -4,-5 0.0368 4 -2.0 MINOR ENSMUSG00000025316 Banp ENSMUST00000172511 ENSMUSP00000133365 TRANSLATION protein_coding stop - 5 179.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000055675 Kbtbd11 ENSMUST00000184598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055675 Kbtbd11 ENSMUST00000183471 ENSMUSP00000139292 TRANSLATION nonsense_mediated_decay - CCDS52493.1 2 633.0 0.0 0.1 0.4 106.9 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000055675 Kbtbd11 ENSMUST00000184243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055675 Kbtbd11 ENSMUST00000069399 ENSMUSP00000068321 TRANSLATION protein_coding - CCDS52493.1 1 633.0 0.0 0.1 0.4 106.9 0.0 -4,-5 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000003814 Calr ENSMUST00000003912 ENSMUSP00000003912 TRANSLATION protein_coding - CCDS22479.1 1 416.0 5.0 8.8 0.1 287.4 0.0 3,-2 1.0 24 17.0 PRINCIPAL:1 ENSMUSG00000003814 Calr ENSMUST00000125998 - NO_TRANSLATION retained_intron ENSMUSG00000003814 Calr ENSMUST00000128028 - NO_TRANSLATION retained_intron ENSMUSG00000003814 Calr ENSMUST00000154774 - NO_TRANSLATION retained_intron ENSMUSG00000048967 Yjefn3 ENSMUST00000152938 ENSMUSP00000118931 TRANSLATION protein_coding - - 5 251.0 0.0 5.15 2.1 97.1 0.0 -4,-6 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000048967 Yjefn3 ENSMUST00000180068 ENSMUSP00000136145 TRANSLATION protein_coding start - 5 199.0 0.0 4.0 0.0 72.5 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000048967 Yjefn3 ENSMUST00000152456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031641 Cbr4 ENSMUST00000155442 - NO_TRANSLATION retained_intron ENSMUSG00000031641 Cbr4 ENSMUST00000130495 - NO_TRANSLATION retained_intron ENSMUSG00000031641 Cbr4 ENSMUST00000034058 ENSMUSP00000034058 TRANSLATION protein_coding - CCDS40349.1 1 236.0 28.0 5.5 30.8 179.1 0.0 -4,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000031641 Cbr4 ENSMUST00000126575 ENSMUSP00000117069 TRANSLATION protein_coding stop - 3 138.0 16.0 2.7 0.0 66.8 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000031641 Cbr4 ENSMUST00000150932 - NO_TRANSLATION retained_intron ENSMUSG00000031641 Cbr4 ENSMUST00000156535 - NO_TRANSLATION retained_intron ENSMUSG00000006589 Aprt ENSMUST00000212093 ENSMUSP00000148652 TRANSLATION protein_coding - - 2 49.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0223 - 0.0 MINOR ENSMUSG00000006589 Aprt ENSMUST00000213017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006589 Aprt ENSMUST00000213062 ENSMUSP00000148607 TRANSLATION protein_coding - - 2 49.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0223 - 0.0 MINOR ENSMUSG00000006589 Aprt ENSMUST00000212834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006589 Aprt ENSMUST00000211823 ENSMUSP00000148745 TRANSLATION protein_coding - - 3 49.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0223 - 0.0 MINOR ENSMUSG00000006589 Aprt ENSMUST00000213030 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006589 Aprt ENSMUST00000211810 - NO_TRANSLATION retained_intron ENSMUSG00000006589 Aprt ENSMUST00000213029 ENSMUSP00000148477 TRANSLATION nonsense_mediated_decay - - 3 67.0 3.0 1.75 0.0 0.0 0.0 -4,-7 0.0071 2 -2.0 MINOR ENSMUSG00000006589 Aprt ENSMUST00000006764 ENSMUSP00000006764 TRANSLATION protein_coding - CCDS40503.1 1 180.0 17.0 5.0 16.0 0.0 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000031697 Orc6 ENSMUST00000034132 ENSMUSP00000034132 TRANSLATION protein_coding - CCDS22497.1 1 262.0 0.0 6.153 0.1 50.2 0.0 -4,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000031697 Orc6 ENSMUST00000211396 ENSMUSP00000147488 TRANSLATION protein_coding stop - 3 197.0 0.0 3.58 0.0 35.5 0.0 -4,-2 0.0051 2 -2.0 MINOR ENSMUSG00000031697 Orc6 ENSMUST00000209733 - NO_TRANSLATION retained_intron ENSMUSG00000031697 Orc6 ENSMUST00000170141 ENSMUSP00000126925 TRANSLATION protein_coding - CCDS52623.1 1 186.0 0.0 4.073 0.0 0.0 0.0 -4,-7 0.0066 2 1.842 MINOR ENSMUSG00000031697 Orc6 ENSMUST00000210146 ENSMUSP00000147381 TRANSLATION nonsense_mediated_decay - - 1 156.0 0.0 4.146 0.0 50.2 0.0 -4,-2 0.0125 2 -2.0 MINOR ENSMUSG00000031697 Orc6 ENSMUST00000211597 ENSMUSP00000147901 TRANSLATION protein_coding stop - 3 160.0 0.0 4.08 0.0 50.2 0.0 -4,-2 0.0125 2 -2.0 MINOR ENSMUSG00000031697 Orc6 ENSMUST00000210458 - NO_TRANSLATION retained_intron ENSMUSG00000001062 Vps9d1 ENSMUST00000130965 - NO_TRANSLATION retained_intron ENSMUSG00000001062 Vps9d1 ENSMUST00000122363 ENSMUSP00000113575 TRANSLATION protein_coding - CCDS52698.1 1 649.0 0.0 0.8 0.0 86.3 0.0 -4,-5 1.0 9 6.0 PRINCIPAL:4 ENSMUSG00000001062 Vps9d1 ENSMUST00000137569 - NO_TRANSLATION retained_intron ENSMUSG00000001062 Vps9d1 ENSMUST00000129591 - NO_TRANSLATION retained_intron ENSMUSG00000001062 Vps9d1 ENSMUST00000155869 ENSMUSP00000122184 TRANSLATION nonsense_mediated_decay - - 1 233.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 4 -2.0 MINOR ENSMUSG00000001062 Vps9d1 ENSMUST00000155853 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001062 Vps9d1 ENSMUST00000117643 ENSMUSP00000113748 TRANSLATION nonsense_mediated_decay - - 1 555.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0025 9 -2.0 MINOR ENSMUSG00000001062 Vps9d1 ENSMUST00000130275 - NO_TRANSLATION retained_intron ENSMUSG00000001062 Vps9d1 ENSMUST00000124508 - NO_TRANSLATION retained_intron ENSMUSG00000001062 Vps9d1 ENSMUST00000146136 - NO_TRANSLATION retained_intron ENSMUSG00000001062 Vps9d1 ENSMUST00000149490 - NO_TRANSLATION retained_intron ENSMUSG00000001062 Vps9d1 ENSMUST00000127978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001062 Vps9d1 ENSMUST00000118279 ENSMUSP00000113634 TRANSLATION protein_coding - CCDS80942.1 1 650.0 0.0 0.8 0.0 84.7 0.0 -4,-5 0.8523 9 6.0 ALTERNATIVE:2 ENSMUSG00000033009 Ogfod1 ENSMUST00000172674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033009 Ogfod1 ENSMUST00000109556 ENSMUSP00000105183 TRANSLATION protein_coding - CCDS22535.2 1 545.0 9.0 8.85 12.5 238.2 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000033009 Ogfod1 ENSMUST00000127634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033009 Ogfod1 ENSMUST00000093301 ENSMUSP00000090991 TRANSLATION protein_coding - CCDS52636.1 1 502.0 8.0 7.85 0.0 133.4 0.0 -4,-5 0.0627 3 9.336 MINOR ENSMUSG00000033009 Ogfod1 ENSMUST00000141636 - NO_TRANSLATION retained_intron ENSMUSG00000033009 Ogfod1 ENSMUST00000145717 - NO_TRANSLATION retained_intron ENSMUSG00000033009 Ogfod1 ENSMUST00000060632 ENSMUSP00000051430 TRANSLATION protein_coding - - 1 530.0 9.0 8.85 0.0 238.2 0.0 -4,-5 0.0612 3 18.0 MINOR ENSMUSG00000044433 Camsap3 ENSMUST00000207152 ENSMUSP00000147126 TRANSLATION nonsense_mediated_decay start - 1 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044433 Camsap3 ENSMUST00000208240 ENSMUSP00000146359 TRANSLATION protein_coding - - 1 848.0 0.0 2.0 0.0 288.7 0.0 -4,-7 0.0626 22 7.5 MINOR ENSMUSG00000044433 Camsap3 ENSMUST00000207930 - NO_TRANSLATION retained_intron ENSMUSG00000044433 Camsap3 ENSMUST00000207432 ENSMUSP00000146896 TRANSLATION protein_coding - CCDS85488.1 1 1279.0 0.0 2.0 0.4 373.3 0.0 -4,-7 0.6216 31 8.0 ALTERNATIVE:2 ENSMUSG00000044433 Camsap3 ENSMUST00000208064 - NO_TRANSLATION retained_intron ENSMUSG00000044433 Camsap3 ENSMUST00000208036 ENSMUSP00000147231 TRANSLATION protein_coding stop - 3 53.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000044433 Camsap3 ENSMUST00000207712 ENSMUSP00000146565 TRANSLATION protein_coding - - 1 837.0 0.0 2.0 0.0 288.7 0.0 -4,-7 0.0612 22 7.5 MINOR ENSMUSG00000044433 Camsap3 ENSMUST00000207077 ENSMUSP00000146852 TRANSLATION protein_coding - CCDS85490.1 1 1268.0 0.0 2.0 0.4 373.3 0.0 -4,-7 0.6443 31 8.0 ALTERNATIVE:2 ENSMUSG00000044433 Camsap3 ENSMUST00000057028 ENSMUSP00000058958 TRANSLATION protein_coding - CCDS22064.1 1 1252.0 0.0 2.0 0.4 373.3 0.0 -4,-7 1.0 31 8.0 PRINCIPAL:4 ENSMUSG00000044433 Camsap3 ENSMUST00000207533 ENSMUSP00000147209 TRANSLATION protein_coding - - 1 852.0 0.0 2.0 0.0 288.7 0.0 -4,-7 0.0632 22 7.5 MINOR ENSMUSG00000044433 Camsap3 ENSMUST00000207970 ENSMUSP00000146772 TRANSLATION protein_coding - CCDS85489.1 1 1263.0 0.0 2.0 0.4 373.3 0.0 -4,-7 0.6581 31 8.0 ALTERNATIVE:2 ENSMUSG00000044433 Camsap3 ENSMUST00000171962 ENSMUSP00000125993 TRANSLATION protein_coding - CCDS52469.1 1 1253.0 0.0 2.0 0.4 373.3 0.0 -4,-7 0.9981 31 8.0 ALTERNATIVE:2 ENSMUSG00000063900 Adam26b ENSMUST00000080135 ENSMUSP00000079032 TRANSLATION protein_coding - CCDS22268.1 1 699.0 25.0 0.32 0.3 416.3 0.0 4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000031556 Tm2d2 ENSMUST00000210536 ENSMUSP00000148166 TRANSLATION protein_coding - - 3 112.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0 - 0.0 MINOR ENSMUSG00000031556 Tm2d2 ENSMUST00000210758 ENSMUSP00000148091 TRANSLATION nonsense_mediated_decay - - 1 221.0 0.0 0.75 0.0 0.0 0.0 0,-3 0.0189 - -2.0 MINOR ENSMUSG00000031556 Tm2d2 ENSMUST00000033961 ENSMUSP00000033961 TRANSLATION protein_coding - CCDS22197.1 1 213.0 0.0 2.75 12.8 55.1 0.0 0,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000043051 Disc1 ENSMUST00000075730 ENSMUSP00000075145 TRANSLATION protein_coding - CCDS40517.1 5 789.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.4642 - 6.0 ALTERNATIVE:2 ENSMUSG00000043051 Disc1 ENSMUST00000121953 ENSMUSP00000112929 TRANSLATION protein_coding - - 1 850.0 0.0 2.0 0.0 0.0 0.0 -3,-4 0.7048 - 6.0 ALTERNATIVE:2 ENSMUSG00000043051 Disc1 ENSMUST00000118942 ENSMUSP00000112410 TRANSLATION protein_coding - CCDS52707.1 1 852.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.797 - 6.0 PRINCIPAL:4 ENSMUSG00000043051 Disc1 ENSMUST00000126111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043051 Disc1 ENSMUST00000122389 ENSMUSP00000112593 TRANSLATION protein_coding - - 1 387.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.059 - 0.0 MINOR ENSMUSG00000043051 Disc1 ENSMUST00000117658 ENSMUSP00000112757 TRANSLATION protein_coding - CCDS40517.1 1 789.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.4642 - 6.0 ALTERNATIVE:2 ENSMUSG00000043051 Disc1 ENSMUST00000098311 ENSMUSP00000095914 TRANSLATION protein_coding - CCDS52707.1 1 852.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.797 - 6.0 PRINCIPAL:4 ENSMUSG00000035439 Haus8 ENSMUST00000134361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035439 Haus8 ENSMUST00000035960 ENSMUSP00000040802 TRANSLATION protein_coding - CCDS52579.1 1 373.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5817 4 0.0 ALTERNATIVE:2 ENSMUSG00000035439 Haus8 ENSMUST00000144726 - NO_TRANSLATION retained_intron ENSMUSG00000035439 Haus8 ENSMUST00000128833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035439 Haus8 ENSMUST00000110071 ENSMUSP00000105698 TRANSLATION protein_coding - CCDS22389.1 1 372.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8896 4 0.0 PRINCIPAL:2 ENSMUSG00000035439 Haus8 ENSMUST00000157039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035439 Haus8 ENSMUST00000123495 ENSMUSP00000123517 TRANSLATION nonsense_mediated_decay - - 5 144.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0209 1 -2.0 MINOR ENSMUSG00000035439 Haus8 ENSMUST00000129455 - NO_TRANSLATION retained_intron ENSMUSG00000036672 Cenpt ENSMUST00000212431 ENSMUSP00000148612 TRANSLATION nonsense_mediated_decay - - 2 42.0 0.0 0.0 0.0 53.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036672 Cenpt ENSMUST00000212797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036672 Cenpt ENSMUST00000212552 ENSMUSP00000148727 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 53.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036672 Cenpt ENSMUST00000212839 ENSMUSP00000148294 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 53.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036672 Cenpt ENSMUST00000212625 - NO_TRANSLATION retained_intron ENSMUSG00000036672 Cenpt ENSMUST00000040776 ENSMUSP00000038188 TRANSLATION protein_coding - CCDS22615.1 1 515.0 0.0 2.6 0.0 680.1 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000036672 Cenpt ENSMUST00000212803 - NO_TRANSLATION retained_intron ENSMUSG00000036672 Cenpt ENSMUST00000212204 - NO_TRANSLATION retained_intron ENSMUSG00000036672 Cenpt ENSMUST00000212873 - NO_TRANSLATION retained_intron ENSMUSG00000036672 Cenpt ENSMUST00000212357 - NO_TRANSLATION retained_intron ENSMUSG00000031511 Arhgef7 ENSMUST00000239427 ENSMUSP00000159352 TRANSLATION protein_coding stop - - 25.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031511 Arhgef7 ENSMUST00000033908 - NO_TRANSLATION retained_intron ENSMUSG00000031511 Arhgef7 ENSMUST00000210104 ENSMUSP00000148109 TRANSLATION protein_coding stop - 3 131.0 0.0 2.7 0.0 56.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000031511 Arhgef7 ENSMUST00000110909 ENSMUSP00000106534 TRANSLATION protein_coding - CCDS52480.1 1 782.0 0.0 12.33 11.6 495.0 0.0 -4,-7 0.9898 25 10.788 PRINCIPAL:1 ENSMUSG00000031511 Arhgef7 ENSMUST00000074856 ENSMUSP00000074399 TRANSLATION protein_coding - CCDS22099.1 1 646.0 0.0 10.83 16.2 517.5 0.0 -4,-5 0.9965 20 8.4 MINOR ENSMUSG00000031511 Arhgef7 ENSMUST00000209686 - NO_TRANSLATION retained_intron ENSMUSG00000031511 Arhgef7 ENSMUST00000151225 - NO_TRANSLATION retained_intron ENSMUSG00000031511 Arhgef7 ENSMUST00000098938 ENSMUSP00000096538 TRANSLATION protein_coding - CCDS52481.1 1 705.0 0.0 10.83 13.4 517.5 0.0 -4,-5 1.0 20 7.664 MINOR ENSMUSG00000031511 Arhgef7 ENSMUST00000211510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031511 Arhgef7 ENSMUST00000210012 ENSMUSP00000147641 TRANSLATION protein_coding stop - 3 200.0 0.0 4.83 0.0 130.5 0.0 -4,-5 0.0004 6 -2.0 MINOR ENSMUSG00000031511 Arhgef7 ENSMUST00000110904 ENSMUSP00000106529 TRANSLATION protein_coding start - 1 636.0 0.0 10.83 0.0 450.9 0.0 -4,-5 0.01 21 -2.0 MINOR ENSMUSG00000031511 Arhgef7 ENSMUST00000211409 ENSMUSP00000148111 TRANSLATION nonsense_mediated_decay start - 3 68.0 0.0 0.3 0.0 51.6 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000031511 Arhgef7 ENSMUST00000154204 - NO_TRANSLATION retained_intron ENSMUSG00000031511 Arhgef7 ENSMUST00000210287 - NO_TRANSLATION retained_intron ENSMUSG00000031444 F10 ENSMUST00000152034 ENSMUSP00000117312 TRANSLATION protein_coding - - 5 319.0 30.0 4.33 0.0 199.1 0.0 2,-3 0.0052 4 3.398 MINOR ENSMUSG00000031444 F10 ENSMUST00000123768 ENSMUSP00000116984 TRANSLATION protein_coding stop - 2 119.0 26.0 2.13 0.0 109.2 0.0 2,-3 0.0024 - -2.0 MINOR ENSMUSG00000031444 F10 ENSMUST00000033821 ENSMUSP00000033821 TRANSLATION protein_coding - CCDS57606.1 1 493.0 39.0 6.33 0.0 384.6 0.0 -1,-4 0.356 11 14.0 ALTERNATIVE:2 ENSMUSG00000031444 F10 ENSMUST00000128418 ENSMUSP00000121830 TRANSLATION protein_coding - - 5 321.0 30.0 4.33 0.0 200.6 0.0 2,-3 0.0052 4 3.398 MINOR ENSMUSG00000031444 F10 ENSMUST00000063820 ENSMUSP00000068389 TRANSLATION protein_coding - CCDS40226.1 1 481.0 39.0 6.33 0.0 384.6 0.0 2,-3 1.0 11 14.0 PRINCIPAL:2 ENSMUSG00000078908 Mon1b ENSMUST00000035777 ENSMUSP00000045089 TRANSLATION protein_coding - CCDS22685.1 1 553.0 0.0 3.4 4.2 417.9 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000078908 Mon1b ENSMUST00000179926 ENSMUSP00000137605 TRANSLATION protein_coding - CCDS22685.1 1 553.0 0.0 3.4 4.2 417.9 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000031627 Irf2 ENSMUST00000210095 - NO_TRANSLATION retained_intron ENSMUSG00000031627 Irf2 ENSMUST00000210334 - NO_TRANSLATION retained_intron ENSMUSG00000031627 Irf2 ENSMUST00000207105 ENSMUSP00000146714 TRANSLATION protein_coding stop - 5 180.0 0.0 2.25 0.0 85.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031627 Irf2 ENSMUST00000210218 ENSMUSP00000147318 TRANSLATION protein_coding - - 3 41.0 0.0 1.0 0.0 30.3 0.0 -4,-5 0.0 - 1.338 MINOR ENSMUSG00000031627 Irf2 ENSMUST00000210284 ENSMUSP00000147279 TRANSLATION nonsense_mediated_decay - - 1 138.0 0.0 3.33 0.0 144.5 0.0 -4,-6 0.0151 - -2.0 MINOR ENSMUSG00000031627 Irf2 ENSMUST00000034041 ENSMUSP00000034041 TRANSLATION protein_coding - CCDS22295.1 1 349.0 0.0 3.33 17.3 144.5 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031627 Irf2 ENSMUST00000208507 ENSMUSP00000147138 TRANSLATION protein_coding stop - 5 113.0 0.0 3.33 0.0 144.5 0.0 -4,-6 0.0155 - -2.0 MINOR ENSMUSG00000031627 Irf2 ENSMUST00000207571 ENSMUSP00000146495 TRANSLATION protein_coding stop - 5 88.0 0.0 2.58 0.0 117.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031627 Irf2 ENSMUST00000209820 - NO_TRANSLATION retained_intron ENSMUSG00000031627 Irf2 ENSMUST00000208433 ENSMUSP00000146992 TRANSLATION protein_coding stop - 2 118.0 0.0 3.33 0.0 144.5 0.0 -4,-6 0.015 - -2.0 MINOR ENSMUSG00000031627 Irf2 ENSMUST00000208976 - NO_TRANSLATION retained_intron ENSMUSG00000038872 Zfhx3 ENSMUST00000043896 ENSMUSP00000044612 TRANSLATION protein_coding - CCDS22651.1 1 3723.0 44.0 0.297 0.0 265.9 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000038872 Zfhx3 ENSMUST00000221237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038872 Zfhx3 ENSMUST00000221100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038872 Zfhx3 ENSMUST00000221632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038872 Zfhx3 ENSMUST00000220518 ENSMUSP00000152353 TRANSLATION protein_coding - CCDS22651.1 5 3723.0 44.0 0.297 0.0 265.9 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000038872 Zfhx3 ENSMUST00000212094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038872 Zfhx3 ENSMUST00000188994 ENSMUSP00000140025 TRANSLATION protein_coding stop - 5 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0299 - -2.0 MINOR ENSMUSG00000031951 Tmem231 ENSMUST00000211866 ENSMUSP00000148428 TRANSLATION nonsense_mediated_decay - - 1 163.0 0.0 1.8 0.0 138.8 1.0 -4,-7 0.0015 1 -2.0 MINOR ENSMUSG00000031951 Tmem231 ENSMUST00000213050 - NO_TRANSLATION retained_intron ENSMUSG00000031951 Tmem231 ENSMUST00000034429 ENSMUSP00000034429 TRANSLATION protein_coding - CCDS52676.1 1 315.0 0.0 6.88 16.7 424.7 2.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000031696 Vps35 ENSMUST00000209277 - NO_TRANSLATION retained_intron ENSMUSG00000031696 Vps35 ENSMUST00000211154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031696 Vps35 ENSMUST00000034131 ENSMUSP00000034131 TRANSLATION protein_coding - CCDS40421.1 1 796.0 0.0 15.75 27.9 993.1 0.0 -4,-5 1.0 31 16.0 PRINCIPAL:1 ENSMUSG00000031696 Vps35 ENSMUST00000211479 - NO_TRANSLATION retained_intron ENSMUSG00000031696 Vps35 ENSMUST00000209228 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031949 Adat1 ENSMUST00000139820 ENSMUSP00000117279 TRANSLATION protein_coding - - 1 454.0 13.0 1.44 0.1 366.8 0.0 -4,-5 0.0173 7 11.622 MINOR ENSMUSG00000031949 Adat1 ENSMUST00000120457 ENSMUSP00000113201 TRANSLATION protein_coding - - 5 354.0 12.0 1.506 0.0 290.6 0.0 -4,-5 0.0247 7 7.332 MINOR ENSMUSG00000031949 Adat1 ENSMUST00000034427 ENSMUSP00000034427 TRANSLATION protein_coding - CCDS22684.1 1 499.0 19.0 1.44 4.8 402.0 0.0 -4,-5 1.0 9 19.736 PRINCIPAL:1 ENSMUSG00000025591 Tma16 ENSMUST00000145787 - NO_TRANSLATION retained_intron ENSMUSG00000025591 Tma16 ENSMUST00000213036 - NO_TRANSLATION retained_intron ENSMUSG00000025591 Tma16 ENSMUST00000026681 ENSMUSP00000026681 TRANSLATION protein_coding - CCDS40353.1 1 221.0 0.0 4.35 0.4 156.7 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000025591 Tma16 ENSMUST00000143972 ENSMUSP00000148586 TRANSLATION nonsense_mediated_decay - - 1 58.0 0.0 1.0 0.0 27.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034112 Atp2c2 ENSMUST00000095171 ENSMUSP00000092794 TRANSLATION protein_coding - CCDS52684.1 1 944.0 10.0 13.105 5.3 455.9 5.0 -4,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000034112 Atp2c2 ENSMUST00000212454 ENSMUSP00000148585 TRANSLATION protein_coding stop - 3 176.0 0.0 1.7 0.0 67.4 2.0 -4,-2 0.0004 - -2.0 MINOR ENSMUSG00000037103 Dcaf15 ENSMUST00000210625 ENSMUSP00000147657 TRANSLATION nonsense_mediated_decay - - 2 51.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037103 Dcaf15 ENSMUST00000041367 ENSMUSP00000038568 TRANSLATION protein_coding - CCDS40406.1 1 638.0 0.0 7.0075 0.0 271.7 0.0 -4,-6 0.0921 1 10.002 MINOR ENSMUSG00000037103 Dcaf15 ENSMUST00000210279 ENSMUSP00000147690 TRANSLATION protein_coding - - 1 600.0 0.0 8.0075 8.0 271.7 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000046714 Foxc2 ENSMUST00000054691 ENSMUSP00000055290 TRANSLATION protein_coding - CCDS40499.1 - 494.0 0.0 0.4 4.2 137.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059355 Wdr83os ENSMUST00000140621 ENSMUSP00000117962 TRANSLATION protein_coding - - 1 89.0 0.0 0.0 0.0 127.3 2.0 -4,-7 0.0307 - 3.654 MINOR ENSMUSG00000059355 Wdr83os ENSMUST00000079764 ENSMUSP00000078697 TRANSLATION protein_coding - CCDS80909.1 1 106.0 0.0 0.0 32.9 166.4 3.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000059355 Wdr83os ENSMUST00000148592 - NO_TRANSLATION retained_intron ENSMUSG00000002341 Ncan ENSMUST00000002412 ENSMUSP00000002412 TRANSLATION protein_coding - CCDS22358.1 1 1268.0 17.0 7.63 0.1 376.8 0.0 3,-2 1.0 22 18.0 PRINCIPAL:1 ENSMUSG00000031982 Arv1 ENSMUST00000212959 ENSMUSP00000148335 TRANSLATION protein_coding start - 1 149.0 0.0 0.0 0.0 74.1 6.0 -4,-6 0.0026 - -2.0 MINOR ENSMUSG00000031982 Arv1 ENSMUST00000034463 ENSMUSP00000034463 TRANSLATION protein_coding - CCDS22774.1 1 266.0 4.0 0.0 5.2 219.4 6.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000031982 Arv1 ENSMUST00000212036 ENSMUSP00000148475 TRANSLATION nonsense_mediated_decay - - 1 112.0 4.0 0.0 0.0 108.7 0.0 -4,-7 0.0009 1 -2.0 MINOR ENSMUSG00000037214 Thap1 ENSMUST00000036807 ENSMUSP00000042464 TRANSLATION protein_coding - CCDS22208.1 1 210.0 5.0 2.35 11.8 63.0 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000037214 Thap1 ENSMUST00000209926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037214 Thap1 ENSMUST00000130231 ENSMUSP00000121153 TRANSLATION protein_coding stop - 3 180.0 2.0 1.6 0.0 41.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000037214 Thap1 ENSMUST00000127536 - NO_TRANSLATION retained_intron ENSMUSG00000045333 Zfp423 ENSMUST00000109655 ENSMUSP00000105282 TRANSLATION protein_coding - CCDS52627.1 1 1292.0 77.0 3.541 16.2 157.9 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000045333 Zfp423 ENSMUST00000173092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045333 Zfp423 ENSMUST00000174249 ENSMUSP00000134103 TRANSLATION protein_coding stop - 2 121.0 6.0 1.175 0.0 23.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045333 Zfp423 ENSMUST00000165770 ENSMUSP00000129724 TRANSLATION protein_coding - CCDS80911.1 1 1167.0 74.0 2.546 13.2 157.9 0.0 -4,-5 0.8654 3 17.222 MINOR ENSMUSG00000045333 Zfp423 ENSMUST00000174764 ENSMUSP00000134575 TRANSLATION protein_coding stop - 3 244.0 17.0 2.795 0.0 43.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045333 Zfp423 ENSMUST00000173725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045333 Zfp423 ENSMUST00000052250 ENSMUSP00000052379 TRANSLATION protein_coding - - 1 1271.0 77.0 3.241 0.0 157.9 0.0 -4,-5 0.2707 3 17.4 MINOR ENSMUSG00000055994 Nod2 ENSMUST00000054324 ENSMUSP00000050538 TRANSLATION protein_coding - - 1 1035.0 10.0 6.33 0.0 270.9 0.0 -4,-7 0.2092 - 18.0 MINOR ENSMUSG00000055994 Nod2 ENSMUST00000118370 ENSMUSP00000113773 TRANSLATION protein_coding - CCDS52632.1 1 1013.0 10.0 6.33 9.6 270.9 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000055994 Nod2 ENSMUST00000109634 ENSMUSP00000105262 TRANSLATION protein_coding - - 1 1020.0 10.0 6.33 0.0 270.9 0.0 -4,-5 0.2807 - 18.0 MINOR ENSMUSG00000055994 Nod2 ENSMUST00000124091 - NO_TRANSLATION retained_intron ENSMUSG00000005150 Wdr83 ENSMUST00000093357 ENSMUSP00000091048 TRANSLATION protein_coding - CCDS22493.1 1 315.0 0.0 8.83 21.0 98.2 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000005150 Wdr83 ENSMUST00000152186 - NO_TRANSLATION retained_intron ENSMUSG00000005150 Wdr83 ENSMUST00000146900 - NO_TRANSLATION retained_intron ENSMUSG00000005150 Wdr83 ENSMUST00000136696 - NO_TRANSLATION retained_intron ENSMUSG00000005150 Wdr83 ENSMUST00000149050 ENSMUSP00000121568 TRANSLATION nonsense_mediated_decay - - 5 130.0 0.0 3.15 0.0 54.9 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000005150 Wdr83 ENSMUST00000131909 - NO_TRANSLATION retained_intron ENSMUSG00000005150 Wdr83 ENSMUST00000142201 ENSMUSP00000122737 TRANSLATION protein_coding start - 2 55.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000005150 Wdr83 ENSMUST00000145880 - NO_TRANSLATION retained_intron ENSMUSG00000005150 Wdr83 ENSMUST00000135463 - NO_TRANSLATION retained_intron ENSMUSG00000005150 Wdr83 ENSMUST00000152785 ENSMUSP00000122127 TRANSLATION protein_coding stop - 3 262.0 0.0 7.13 0.0 72.8 0.0 -4,-6 0.0024 8 -2.0 MINOR ENSMUSG00000060560 Ces4a ENSMUST00000161289 ENSMUSP00000125062 TRANSLATION protein_coding - CCDS22591.2 1 563.0 6.0 12.0 0.4 533.4 0.0 4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000060070 Defa26 ENSMUST00000074343 ENSMUSP00000073950 TRANSLATION protein_coding - CCDS40278.1 1 93.0 0.0 1.0 0.1 113.0 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038542 Pcid2 ENSMUST00000164416 ENSMUSP00000133204 TRANSLATION protein_coding - CCDS52484.1 1 399.0 0.0 11.57 34.3 66.9 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000038542 Pcid2 ENSMUST00000168164 ENSMUSP00000128207 TRANSLATION nonsense_mediated_decay - - 1 52.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038542 Pcid2 ENSMUST00000172443 ENSMUSP00000127622 TRANSLATION nonsense_mediated_decay - - 5 128.0 0.0 4.24 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038542 Pcid2 ENSMUST00000166881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038542 Pcid2 ENSMUST00000165097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038542 Pcid2 ENSMUST00000167198 ENSMUSP00000130059 TRANSLATION nonsense_mediated_decay start - 5 23.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000212956 ENSMUSP00000148374 TRANSLATION protein_coding stop - 3 112.0 0.0 1.396 0.0 0.0 0.0 3,-3 0.0007 1 -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000212976 ENSMUSP00000148439 TRANSLATION protein_coding stop - 3 229.0 0.0 4.976 0.0 0.0 0.0 2,-3 0.0 2 -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000211944 ENSMUSP00000148386 TRANSLATION protein_coding stop - 5 32.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000212118 ENSMUSP00000148304 TRANSLATION protein_coding stop - 5 167.0 0.0 3.226 0.0 0.0 0.0 3,-3 0.0007 2 -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000212995 ENSMUSP00000148309 TRANSLATION protein_coding stop - 3 20.0 0.0 0.0 0.0 0.0 0.0 -2,-7 0.0001 - -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000211850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031785 Adgrg1 ENSMUST00000212660 ENSMUSP00000148644 TRANSLATION nonsense_mediated_decay - CCDS22553.1 1 687.0 0.0 11.191 5.1 149.1 5.0 3,-3 1.0 - -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000212141 ENSMUSP00000148331 TRANSLATION protein_coding stop - 2 256.0 0.0 5.976 0.0 0.0 0.0 3,-3 0.0007 2 -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000093271 ENSMUSP00000090959 TRANSLATION protein_coding - CCDS22553.1 1 687.0 0.0 11.191 5.1 149.1 5.0 3,-3 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000031785 Adgrg1 ENSMUST00000211911 - NO_TRANSLATION retained_intron ENSMUSG00000031785 Adgrg1 ENSMUST00000212531 ENSMUSP00000148650 TRANSLATION protein_coding stop - 3 118.0 0.0 1.396 0.0 0.0 0.0 3,-3 0.0007 2 -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000179619 ENSMUSP00000137520 TRANSLATION protein_coding - CCDS22553.1 1 687.0 0.0 11.191 5.1 149.1 5.0 3,-3 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000031785 Adgrg1 ENSMUST00000211984 ENSMUSP00000148412 TRANSLATION protein_coding stop - 5 185.0 0.0 3.726 0.0 0.0 0.0 3,-3 0.0007 2 -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000212799 ENSMUSP00000148349 TRANSLATION protein_coding stop - 3 149.0 0.0 2.726 0.0 0.0 0.0 3,-3 0.0007 2 -2.0 MINOR ENSMUSG00000031785 Adgrg1 ENSMUST00000211806 - NO_TRANSLATION retained_intron ENSMUSG00000031785 Adgrg1 ENSMUST00000212581 ENSMUSP00000148742 TRANSLATION protein_coding stop - 3 105.0 0.0 1.066 0.0 0.0 0.0 3,-2 0.0007 1 -2.0 MINOR ENSMUSG00000004637 Wwox ENSMUST00000160205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004637 Wwox ENSMUST00000162052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004637 Wwox ENSMUST00000004756 ENSMUSP00000004756 TRANSLATION protein_coding - CCDS22691.1 1 414.0 30.0 6.45 26.7 149.1 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000004637 Wwox ENSMUST00000109107 ENSMUSP00000104735 TRANSLATION protein_coding - - 1 158.0 2.0 2.55 0.0 68.9 0.0 -4,-5 0.0 4 1.188 MINOR ENSMUSG00000004637 Wwox ENSMUST00000160005 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004637 Wwox ENSMUST00000161753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004637 Wwox ENSMUST00000159870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004637 Wwox ENSMUST00000160862 ENSMUSP00000125626 TRANSLATION protein_coding - - 1 354.0 30.0 5.65 4.6 149.1 0.0 -4,-5 0.1718 10 16.958 MINOR ENSMUSG00000004637 Wwox ENSMUST00000109108 ENSMUSP00000104736 TRANSLATION protein_coding - - 1 367.0 30.0 5.9 0.0 149.1 0.0 -4,-5 0.0154 10 16.902 MINOR ENSMUSG00000031980 Agt ENSMUST00000063278 ENSMUSP00000066488 TRANSLATION protein_coding - CCDS40513.1 1 482.0 0.0 3.5 0.0 175.5 0.0 -1,-3 0.5047 10 12.0 MINOR ENSMUSG00000031980 Agt ENSMUST00000238882 ENSMUSP00000159140 TRANSLATION protein_coding - - - 477.0 0.0 3.5 6.7 175.5 0.0 1,-3 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000070023 Gm10283 ENSMUST00000093494 ENSMUSP00000091206 TRANSLATION protein_coding - - 1 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000031652 N4bp1 ENSMUST00000209389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031652 N4bp1 ENSMUST00000034074 ENSMUSP00000034074 TRANSLATION protein_coding - CCDS52625.1 1 893.0 0.0 4.5 5.4 183.2 0.0 -4,-6 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000031652 N4bp1 ENSMUST00000210029 - NO_TRANSLATION retained_intron ENSMUSG00000033998 Kcnk1 ENSMUST00000212831 ENSMUSP00000148778 TRANSLATION protein_coding - - 5 328.0 0.0 2.4 0.0 120.1 3.0 -3,-7 0.0957 1 12.0 MINOR ENSMUSG00000033998 Kcnk1 ENSMUST00000046765 ENSMUSP00000046103 TRANSLATION protein_coding - CCDS22783.1 1 336.0 0.0 2.4 20.4 120.1 3.0 -3,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000014856 Tmem208 ENSMUST00000015000 ENSMUSP00000015000 TRANSLATION protein_coding - CCDS22599.1 1 173.0 0.0 4.13 18.6 176.8 5.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000014856 Tmem208 ENSMUST00000098453 ENSMUSP00000096052 TRANSLATION protein_coding - - 1 176.0 0.0 2.55 0.0 87.4 4.0 -4,-7 0.0127 1 3.474 MINOR ENSMUSG00000014856 Tmem208 ENSMUST00000109372 ENSMUSP00000104997 TRANSLATION nonsense_mediated_decay - - 5 110.0 0.0 2.55 0.1 89.0 4.0 -4,-7 0.0037 1 -2.0 MINOR ENSMUSG00000014856 Tmem208 ENSMUST00000126705 ENSMUSP00000138226 TRANSLATION nonsense_mediated_decay - - 2 100.0 0.0 2.55 0.0 88.4 4.0 -4,-7 0.0037 - -2.0 MINOR ENSMUSG00000014856 Tmem208 ENSMUST00000153146 ENSMUSP00000138470 TRANSLATION nonsense_mediated_decay - - 3 100.0 0.0 2.55 0.0 88.4 4.0 -4,-7 0.0037 1 -2.0 MINOR ENSMUSG00000031629 Cenpu ENSMUST00000211217 - NO_TRANSLATION retained_intron ENSMUSG00000031629 Cenpu ENSMUST00000210368 ENSMUSP00000147789 TRANSLATION protein_coding stop - 3 113.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000031629 Cenpu ENSMUST00000129371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031629 Cenpu ENSMUST00000153908 ENSMUSP00000147322 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000031629 Cenpu ENSMUST00000136724 - NO_TRANSLATION retained_intron ENSMUSG00000031629 Cenpu ENSMUST00000034045 ENSMUSP00000034045 TRANSLATION protein_coding - CCDS22292.1 1 410.0 0.0 4.2 0.3 236.5 0.0 -4,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000031629 Cenpu ENSMUST00000122838 ENSMUSP00000147798 TRANSLATION nonsense_mediated_decay start - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000031629 Cenpu ENSMUST00000135432 ENSMUSP00000120321 TRANSLATION nonsense_mediated_decay - - 1 43.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000031629 Cenpu ENSMUST00000093518 ENSMUSP00000091239 TRANSLATION protein_coding - - 1 260.0 0.0 4.2 0.0 191.6 0.0 -4,0 0.0406 3 9.306 MINOR ENSMUSG00000078931 Pdf ENSMUST00000055316 ENSMUSP00000138676 TRANSLATION protein_coding - CCDS59743.1 1 231.0 6.0 2.5 0.0 133.8 0.0 -4,0 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000078931 Pdf ENSMUST00000154271 ENSMUSP00000138756 TRANSLATION nonsense_mediated_decay start - 1 24.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039539 Sgcz ENSMUST00000118896 ENSMUSP00000113912 TRANSLATION protein_coding - CCDS22251.2 1 311.0 0.0 5.75 14.2 296.0 1.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000039539 Sgcz ENSMUST00000135764 ENSMUSP00000117250 TRANSLATION nonsense_mediated_decay - - 5 209.0 0.0 3.8 0.0 171.3 1.0 -4,-6 0.0015 1 -2.0 MINOR ENSMUSG00000032815 Fanca ENSMUST00000118395 ENSMUSP00000113125 TRANSLATION protein_coding - - 1 481.0 0.0 0.0 0.0 341.3 0.0 -4,-7 0.0016 - 0.0 MINOR ENSMUSG00000032815 Fanca ENSMUST00000213090 ENSMUSP00000148306 TRANSLATION protein_coding start - 5 169.0 0.0 1.318 0.0 44.4 0.0 2,-3 0.0011 2 -2.0 MINOR ENSMUSG00000032815 Fanca ENSMUST00000035495 ENSMUSP00000045217 TRANSLATION protein_coding - CCDS22753.1 1 1439.0 0.0 9.5735 0.0 584.7 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000032815 Fanca ENSMUST00000155510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032815 Fanca ENSMUST00000155488 - NO_TRANSLATION retained_intron ENSMUSG00000032815 Fanca ENSMUST00000211934 - NO_TRANSLATION retained_intron ENSMUSG00000032815 Fanca ENSMUST00000150318 - NO_TRANSLATION retained_intron ENSMUSG00000032815 Fanca ENSMUST00000212953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032815 Fanca ENSMUST00000155279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032815 Fanca ENSMUST00000133950 - NO_TRANSLATION retained_intron ENSMUSG00000032815 Fanca ENSMUST00000126834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032815 Fanca ENSMUST00000135702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032815 Fanca ENSMUST00000146687 - NO_TRANSLATION retained_intron ENSMUSG00000032815 Fanca ENSMUST00000127904 ENSMUSP00000116614 TRANSLATION protein_coding start - 1 771.0 0.0 3.7335 0.0 475.7 0.0 -3,0 0.0159 1 -2.0 MINOR ENSMUSG00000040197 Cd209e ENSMUST00000033888 ENSMUSP00000033888 TRANSLATION protein_coding - CCDS22074.1 1 208.0 10.0 5.0 0.1 80.6 0.0 -3,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000012519 Mlkl ENSMUST00000145862 ENSMUSP00000114701 TRANSLATION protein_coding stop - 5 176.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000012519 Mlkl ENSMUST00000120432 ENSMUSP00000113718 TRANSLATION protein_coding - CCDS52671.1 1 464.0 0.0 8.5 0.1 141.3 0.0 -4,-5 0.4244 10 7.604 ALTERNATIVE:2 ENSMUSG00000012519 Mlkl ENSMUST00000056157 ENSMUSP00000055521 TRANSLATION protein_coding - CCDS80932.1 1 472.0 0.0 8.698 0.1 138.2 0.0 -4,-5 0.8911 9 8.0 PRINCIPAL:2 ENSMUSG00000012519 Mlkl ENSMUST00000135710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038215 Cep44 ENSMUST00000210545 - NO_TRANSLATION retained_intron ENSMUSG00000038215 Cep44 ENSMUST00000040330 ENSMUSP00000042586 TRANSLATION protein_coding - CCDS22313.1 1 386.0 0.0 0.0 1.4 169.3 0.0 -4,-6 1.0 5 7.0 PRINCIPAL:1 ENSMUSG00000038215 Cep44 ENSMUST00000135337 ENSMUSP00000122835 TRANSLATION protein_coding stop - 3 80.0 0.0 0.0 0.0 92.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038215 Cep44 ENSMUST00000134162 ENSMUSP00000117526 TRANSLATION protein_coding stop - 5 102.0 0.0 0.0 0.0 135.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000038215 Cep44 ENSMUST00000126830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038215 Cep44 ENSMUST00000127877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038215 Cep44 ENSMUST00000140107 ENSMUSP00000114502 TRANSLATION protein_coding stop - 3 169.0 0.0 0.0 0.0 169.3 0.0 -4,-6 0.0425 2 -2.0 MINOR ENSMUSG00000038215 Cep44 ENSMUST00000130930 ENSMUSP00000118959 TRANSLATION protein_coding stop - 5 63.0 0.0 0.0 0.0 61.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038215 Cep44 ENSMUST00000211049 - NO_TRANSLATION retained_intron ENSMUSG00000038215 Cep44 ENSMUST00000123493 ENSMUSP00000116884 TRANSLATION protein_coding start - 5 345.0 0.0 0.0 0.0 94.4 0.0 -4,-5 0.0011 4 -2.0 MINOR ENSMUSG00000036934 4921524J17Rik ENSMUST00000210556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036934 4921524J17Rik ENSMUST00000047749 ENSMUSP00000040975 TRANSLATION protein_coding - CCDS22498.1 1 154.0 4.0 0.0 28.3 43.1 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000036934 4921524J17Rik ENSMUST00000209355 ENSMUSP00000147531 TRANSLATION nonsense_mediated_decay - - 1 40.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000031503 Col4a2 ENSMUST00000146219 - NO_TRANSLATION retained_intron ENSMUSG00000031503 Col4a2 ENSMUST00000145295 - NO_TRANSLATION retained_intron ENSMUSG00000031503 Col4a2 ENSMUST00000033899 ENSMUSP00000033899 TRANSLATION protein_coding - CCDS40220.1 1 1707.0 0.0 8.3645 7.5 614.1 0.0 0,-3 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000052557 Gan ENSMUST00000162997 ENSMUSP00000124904 TRANSLATION protein_coding start - 1 597.0 0.0 6.15 9.7 284.7 0.0 -4,-7 0.7997 12 -2.0 MINOR ENSMUSG00000052557 Gan ENSMUST00000064488 ENSMUSP00000070168 TRANSLATION protein_coding - CCDS40490.1 1 597.0 0.0 6.15 13.7 284.7 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000015027 Galns ENSMUST00000211906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015027 Galns ENSMUST00000212319 ENSMUSP00000148591 TRANSLATION protein_coding - CCDS85625.1 1 440.0 13.0 10.85 0.0 278.4 0.0 3,-2 0.0266 9 7.998 MINOR ENSMUSG00000015027 Galns ENSMUST00000015171 ENSMUSP00000015171 TRANSLATION protein_coding - CCDS40504.1 1 520.0 13.0 12.85 8.3 409.6 0.0 3,-2 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000082211 Defa27 ENSMUST00000168340 ENSMUSP00000131618 TRANSLATION protein_coding - - 5 66.0 0.0 1.0 0.0 41.2 0.0 -4,-7 0.7681 - 12.0 PRINCIPAL:1 ENSMUSG00000006585 Cdt1 ENSMUST00000006760 ENSMUSP00000006760 TRANSLATION protein_coding - CCDS22741.1 1 557.0 0.0 6.4 0.1 300.6 0.0 -4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000006585 Cdt1 ENSMUST00000212053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006585 Cdt1 ENSMUST00000212967 - NO_TRANSLATION retained_intron ENSMUSG00000006585 Cdt1 ENSMUST00000212201 - NO_TRANSLATION retained_intron ENSMUSG00000006585 Cdt1 ENSMUST00000212821 - NO_TRANSLATION retained_intron ENSMUSG00000031575 Ash2l ENSMUST00000110610 ENSMUSP00000106240 TRANSLATION protein_coding - CCDS40308.1 1 534.0 4.0 13.83 9.7 49.6 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000031575 Ash2l ENSMUST00000110609 ENSMUSP00000106239 TRANSLATION protein_coding - CCDS40308.1 1 534.0 4.0 13.83 9.7 49.6 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000031575 Ash2l ENSMUST00000211188 - NO_TRANSLATION retained_intron ENSMUSG00000031575 Ash2l ENSMUST00000149550 - NO_TRANSLATION retained_intron ENSMUSG00000031575 Ash2l ENSMUST00000110608 ENSMUSP00000106238 TRANSLATION protein_coding - - 5 501.0 4.0 12.83 2.0 26.2 0.0 -4,-5 0.0692 11 11.515 MINOR ENSMUSG00000031575 Ash2l ENSMUST00000151856 ENSMUSP00000117488 TRANSLATION nonsense_mediated_decay - - 1 352.0 4.0 5.0 0.0 0.0 1.0 -4,-6 0.0022 6 -2.0 MINOR ENSMUSG00000031575 Ash2l ENSMUST00000068892 ENSMUSP00000070957 TRANSLATION protein_coding - CCDS40307.1 1 623.0 4.0 13.83 4.7 49.6 0.0 -4,-6 0.5295 14 17.275 MINOR ENSMUSG00000031575 Ash2l ENSMUST00000156759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031575 Ash2l ENSMUST00000166078 ENSMUSP00000132546 TRANSLATION protein_coding - CCDS40308.1 5 534.0 4.0 13.83 9.7 49.6 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000031575 Ash2l ENSMUST00000142358 - NO_TRANSLATION retained_intron ENSMUSG00000031575 Ash2l ENSMUST00000139946 ENSMUSP00000118346 TRANSLATION nonsense_mediated_decay - - 5 346.0 4.0 5.75 0.0 0.0 1.0 -4,-6 0.0022 6 -2.0 MINOR ENSMUSG00000038225 Primpol ENSMUST00000211400 ENSMUSP00000147574 TRANSLATION nonsense_mediated_decay - CCDS40334.1 1 537.0 0.0 4.43 0.3 0.0 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000038225 Primpol ENSMUST00000132472 - NO_TRANSLATION retained_intron ENSMUSG00000038225 Primpol ENSMUST00000136335 ENSMUSP00000147458 TRANSLATION nonsense_mediated_decay - - 5 265.0 0.0 2.5 0.0 0.0 0.0 -4,-7 0.0219 - -2.0 MINOR ENSMUSG00000038225 Primpol ENSMUST00000125319 ENSMUSP00000115987 TRANSLATION protein_coding stop - 3 114.0 0.0 1.75 0.0 0.0 0.0 -4,-7 0.0128 - -2.0 MINOR ENSMUSG00000038225 Primpol ENSMUST00000209787 ENSMUSP00000148093 TRANSLATION protein_coding - CCDS40334.1 5 537.0 0.0 4.43 0.3 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038225 Primpol ENSMUST00000210264 ENSMUSP00000148164 TRANSLATION protein_coding stop - 2 30.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0232 - -2.0 MINOR ENSMUSG00000038225 Primpol ENSMUST00000123328 ENSMUSP00000147684 TRANSLATION nonsense_mediated_decay start - 5 38.0 0.0 0.93 0.0 0.0 0.0 -4,-2 0.0303 - -2.0 MINOR ENSMUSG00000038225 Primpol ENSMUST00000040468 ENSMUSP00000036119 TRANSLATION protein_coding - CCDS40334.1 1 537.0 0.0 4.43 0.3 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031538 Plat ENSMUST00000211033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031538 Plat ENSMUST00000033941 ENSMUSP00000033941 TRANSLATION protein_coding - CCDS22183.1 1 559.0 6.0 9.53 7.2 455.5 0.0 2,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000031538 Plat ENSMUST00000210960 - NO_TRANSLATION retained_intron ENSMUSG00000031985 Gnpat ENSMUST00000161986 ENSMUSP00000125323 TRANSLATION protein_coding stop - 1 585.0 0.0 8.6 0.0 81.8 0.0 -4,-2 0.0232 20 -2.0 MINOR ENSMUSG00000031985 Gnpat ENSMUST00000161628 - NO_TRANSLATION retained_intron ENSMUSG00000031985 Gnpat ENSMUST00000162455 - NO_TRANSLATION retained_intron ENSMUSG00000031985 Gnpat ENSMUST00000162192 - NO_TRANSLATION retained_intron ENSMUSG00000031985 Gnpat ENSMUST00000159864 - NO_TRANSLATION retained_intron ENSMUSG00000031985 Gnpat ENSMUST00000034466 ENSMUSP00000034466 TRANSLATION protein_coding - CCDS22776.1 1 678.0 0.0 10.559 5.5 82.6 0.0 -4,-2 1.0 24 14.0 PRINCIPAL:1 ENSMUSG00000031787 Katnb1 ENSMUST00000212565 - NO_TRANSLATION retained_intron ENSMUSG00000031787 Katnb1 ENSMUST00000212528 - NO_TRANSLATION retained_intron ENSMUSG00000031787 Katnb1 ENSMUST00000212895 - NO_TRANSLATION retained_intron ENSMUSG00000031787 Katnb1 ENSMUST00000034239 ENSMUSP00000034239 TRANSLATION protein_coding - CCDS22555.1 1 658.0 0.0 9.53 15.0 347.7 0.0 -4,-6 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000031787 Katnb1 ENSMUST00000212968 ENSMUSP00000148781 TRANSLATION nonsense_mediated_decay - - 5 109.0 0.0 1.9 0.0 46.7 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000036151 Tm6sf2 ENSMUST00000049197 ENSMUSP00000046114 TRANSLATION protein_coding - CCDS22357.1 1 376.0 0.0 9.75 16.0 61.3 8.0 -4,-5 1.0 1 12.0 ALTERNATIVE:1 ENSMUSG00000036151 Tm6sf2 ENSMUST00000110160 ENSMUSP00000105788 TRANSLATION protein_coding - CCDS80889.1 1 378.0 0.0 9.75 13.8 61.3 8.0 -4,-5 0.985 3 11.412 PRINCIPAL:3 ENSMUSG00000036151 Tm6sf2 ENSMUST00000148015 - NO_TRANSLATION retained_intron ENSMUSG00000036151 Tm6sf2 ENSMUST00000149928 - NO_TRANSLATION retained_intron ENSMUSG00000036151 Tm6sf2 ENSMUST00000124742 - NO_TRANSLATION retained_intron ENSMUSG00000031706 Rfx1 ENSMUST00000209362 - NO_TRANSLATION retained_intron ENSMUSG00000031706 Rfx1 ENSMUST00000210660 - NO_TRANSLATION retained_intron ENSMUSG00000031706 Rfx1 ENSMUST00000005600 ENSMUSP00000005600 TRANSLATION protein_coding - CCDS22468.1 1 963.0 0.0 1.6 0.1 329.5 0.0 -4,-5 1.0 9 8.0 PRINCIPAL:2 ENSMUSG00000031706 Rfx1 ENSMUST00000211046 ENSMUSP00000147677 TRANSLATION protein_coding - - 5 910.0 0.0 1.6 0.0 329.5 0.0 -4,-5 0.1684 9 8.0 ALTERNATIVE:2 ENSMUSG00000074384 AI429214 ENSMUST00000098825 ENSMUSP00000096424 TRANSLATION protein_coding - CCDS22250.1 - 293.0 2.0 0.0 0.4 149.3 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000031714 Gab1 ENSMUST00000210676 ENSMUSP00000147784 TRANSLATION protein_coding - CCDS85569.1 1 725.0 8.0 1.0 13.2 77.1 0.0 -4,-6 1.0 15 18.0 PRINCIPAL:3 ENSMUSG00000031714 Gab1 ENSMUST00000034150 ENSMUSP00000034150 TRANSLATION protein_coding - CCDS22443.1 1 695.0 8.0 1.0 12.1 77.1 0.0 -4,-6 0.9483 14 17.64 ALTERNATIVE:1 ENSMUSG00000031714 Gab1 ENSMUST00000211018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031981 Capn9 ENSMUST00000133086 ENSMUSP00000119938 TRANSLATION protein_coding stop - 5 64.0 0.0 0.3 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000031981 Capn9 ENSMUST00000093033 ENSMUSP00000090717 TRANSLATION protein_coding - CCDS40514.1 1 690.0 24.0 15.58 20.2 630.1 0.0 -4,0 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000031981 Capn9 ENSMUST00000133583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031799 Tpm4 ENSMUST00000238752 - NO_TRANSLATION retained_intron ENSMUSG00000031799 Tpm4 ENSMUST00000123177 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031799 Tpm4 ENSMUST00000238492 ENSMUSP00000158818 TRANSLATION protein_coding - - - 158.0 0.0 4.75 8.8 216.0 0.0 -4,-5 0.1202 7 3.592 MINOR ENSMUSG00000031799 Tpm4 ENSMUST00000003575 ENSMUSP00000003575 TRANSLATION protein_coding - CCDS22408.1 1 248.0 0.0 6.75 33.0 305.7 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000110333 Gm45861 ENSMUST00000210427 ENSMUSP00000147760 TRANSLATION nonsense_mediated_decay,RT - - 5 1629.0 0.0 5.45 0.0 86.8 0.0 -4,-5 0.1399 - -2.0 ALTERNATIVE:2 ENSMUSG00000110333 Gm45861 ENSMUST00000209669 ENSMUSP00000147714 TRANSLATION protein_coding,RT - - 5 1923.0 0.0 5.2 0.0 157.0 0.0 -4,-7 0.9235 - -2.0 PRINCIPAL:5 ENSMUSG00000038894 Irs2 ENSMUST00000040514 ENSMUSP00000038514 TRANSLATION protein_coding - CCDS52477.1 1 1321.0 0.0 0.0 0.1 132.5 0.0 -4,-5 1.0 18 6.0 PRINCIPAL:1 ENSMUSG00000071937 Adam25 ENSMUST00000096663 ENSMUSP00000094420 TRANSLATION protein_coding - CCDS22256.1 1 760.0 16.0 0.16 0.1 407.4 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000038398 Upf3a ENSMUST00000043767 ENSMUSP00000037354 TRANSLATION protein_coding - CCDS40235.1 1 422.0 0.0 3.16 0.0 174.0 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000038398 Upf3a ENSMUST00000211643 - NO_TRANSLATION retained_intron ENSMUSG00000038398 Upf3a ENSMUST00000211724 - NO_TRANSLATION retained_intron ENSMUSG00000019732 Calr3 ENSMUST00000109974 ENSMUSP00000105601 TRANSLATION protein_coding - CCDS40388.1 1 272.0 1.0 3.69 0.0 66.0 0.0 -4,-5 0.0007 1 2.902 MINOR ENSMUSG00000019732 Calr3 ENSMUST00000019876 ENSMUSP00000019876 TRANSLATION protein_coding - CCDS22413.1 1 380.0 5.0 6.13 10.3 153.0 0.0 4,-1 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000031604 Msmo1 ENSMUST00000135943 - NO_TRANSLATION retained_intron ENSMUSG00000031604 Msmo1 ENSMUST00000147419 ENSMUSP00000117545 TRANSLATION protein_coding stop - 3 109.0 0.0 2.08 0.0 0.0 1.0 -3,-6 0.0015 2 -2.0 MINOR ENSMUSG00000031604 Msmo1 ENSMUST00000145216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031604 Msmo1 ENSMUST00000141021 ENSMUSP00000121070 TRANSLATION protein_coding stop - 3 76.0 0.0 1.0 0.0 0.0 1.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000031604 Msmo1 ENSMUST00000132013 - NO_TRANSLATION retained_intron ENSMUSG00000031604 Msmo1 ENSMUST00000034015 ENSMUSP00000034015 TRANSLATION protein_coding - CCDS22328.1 1 293.0 0.0 5.83 15.0 98.8 2.0 -3,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000031604 Msmo1 ENSMUST00000140861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037251 Pomk ENSMUST00000061850 ENSMUSP00000053802 TRANSLATION protein_coding - CCDS22204.1 1 349.0 0.0 1.8 3.5 37.6 0.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000052906 Ubxn8 ENSMUST00000095349 ENSMUSP00000092992 TRANSLATION protein_coding - CCDS22234.1 1 277.0 0.0 2.25 8.7 50.9 0.0 -1,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000052906 Ubxn8 ENSMUST00000210807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079033 Mef2b ENSMUST00000163756 ENSMUSP00000132314 TRANSLATION protein_coding - CCDS22361.1 2 349.0 0.0 1.9 0.1 0.0 0.0 -4,-7 0.3505 - 6.0 ALTERNATIVE:2 ENSMUSG00000079033 Mef2b ENSMUST00000110141 ENSMUSP00000105768 TRANSLATION protein_coding - - 1 242.0 0.0 1.9 0.0 0.0 0.0 -4,-7 0.6552 - 6.0 PRINCIPAL:2 ENSMUSG00000079033 Mef2b ENSMUST00000110140 ENSMUSP00000105767 TRANSLATION protein_coding - - 1 232.0 0.0 1.9 0.0 0.0 0.0 -4,-7 0.1165 - 6.0 ALTERNATIVE:2 ENSMUSG00000079033 Mef2b ENSMUST00000110146 ENSMUSP00000105773 TRANSLATION protein_coding - CCDS22361.1 1 349.0 0.0 1.9 0.1 0.0 0.0 -4,-7 0.3505 - 6.0 ALTERNATIVE:2 ENSMUSG00000079033 Mef2b ENSMUST00000110143 ENSMUSP00000105770 TRANSLATION protein_coding - CCDS40368.1 1 339.0 0.0 1.9 0.0 0.0 0.0 -4,-7 0.3463 - 6.0 ALTERNATIVE:2 ENSMUSG00000117748 Derpc ENSMUST00000169312 ENSMUSP00000129823 TRANSLATION protein_coding - - 1 533.0 0.0 0.0 5.3 0.0 0.0 -4,-7 0.8278 18 2.0 PRINCIPAL:1 ENSMUSG00000117748 Derpc ENSMUST00000176437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010435 Spaca7 ENSMUST00000209428 ENSMUSP00000147552 TRANSLATION protein_coding - - 1 166.0 0.0 0.0 0.0 136.8 0.0 3,-2 0.0255 - 1.0 ALTERNATIVE:2 ENSMUSG00000010435 Spaca7 ENSMUST00000210276 ENSMUSP00000147722 TRANSLATION protein_coding - - 5 158.0 0.0 0.0 0.1 137.2 0.0 3,-2 0.0206 - 2.0 ALTERNATIVE:2 ENSMUSG00000010435 Spaca7 ENSMUST00000210424 ENSMUSP00000147538 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 3,-3 0.0055 - -2.0 MINOR ENSMUSG00000010435 Spaca7 ENSMUST00000211182 ENSMUSP00000147934 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 3,-3 0.0055 - -2.0 MINOR ENSMUSG00000010435 Spaca7 ENSMUST00000010579 ENSMUSP00000010579 TRANSLATION protein_coding - CCDS40222.1 1 182.0 0.0 0.0 0.3 150.1 0.0 3,-2 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000055730 Ces2a ENSMUST00000164182 ENSMUSP00000127346 TRANSLATION protein_coding - CCDS52650.1 1 525.0 6.0 10.0 0.8 505.8 0.0 4,-1 0.0906 6 13.38 MINOR ENSMUSG00000055730 Ces2a ENSMUST00000161824 ENSMUSP00000148699 TRANSLATION nonsense_mediated_decay start - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000055730 Ces2a ENSMUST00000034346 ENSMUSP00000034346 TRANSLATION protein_coding - CCDS22585.1 1 558.0 6.0 11.0 4.5 549.5 0.0 4,-1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000055730 Ces2a ENSMUST00000159303 ENSMUSP00000148459 TRANSLATION protein_coding start - 3 119.0 1.0 2.75 0.9 90.4 0.0 -4,-6 0.0327 2 -2.0 MINOR ENSMUSG00000031841 Cdh13 ENSMUST00000151842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031841 Cdh13 ENSMUST00000123567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031841 Cdh13 ENSMUST00000145849 - NO_TRANSLATION retained_intron ENSMUSG00000031841 Cdh13 ENSMUST00000212476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031841 Cdh13 ENSMUST00000142551 - NO_TRANSLATION retained_intron ENSMUSG00000031841 Cdh13 ENSMUST00000117160 ENSMUSP00000113527 TRANSLATION protein_coding - CCDS52682.1 1 714.0 47.0 10.7 5.3 372.0 0.0 4,-1 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000031841 Cdh13 ENSMUST00000148836 - NO_TRANSLATION retained_intron ENSMUSG00000031841 Cdh13 ENSMUST00000129548 - NO_TRANSLATION retained_intron ENSMUSG00000037406 Htra4 ENSMUST00000084031 ENSMUSP00000081044 TRANSLATION protein_coding - CCDS40301.1 1 483.0 6.0 6.83 0.3 217.5 0.0 3,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000037406 Htra4 ENSMUST00000176814 - NO_TRANSLATION retained_intron ENSMUSG00000055553 Kxd1 ENSMUST00000138586 - NO_TRANSLATION retained_intron ENSMUSG00000055553 Kxd1 ENSMUST00000138260 ENSMUSP00000123438 TRANSLATION protein_coding stop - 5 193.0 0.0 5.5 0.0 225.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000055553 Kxd1 ENSMUST00000155677 ENSMUSP00000123548 TRANSLATION nonsense_mediated_decay - - 3 114.0 0.0 3.0 0.0 108.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000055553 Kxd1 ENSMUST00000132867 ENSMUSP00000123679 TRANSLATION protein_coding stop - 3 37.0 0.0 1.0 0.0 36.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055553 Kxd1 ENSMUST00000117580 ENSMUSP00000112561 TRANSLATION protein_coding - - 5 114.0 0.0 3.0 0.0 108.2 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000055553 Kxd1 ENSMUST00000093456 ENSMUSP00000091165 TRANSLATION protein_coding - CCDS52574.1 1 177.0 0.0 3.0 2.5 108.2 0.0 -4,-5 0.5405 2 1.0 MINOR ENSMUSG00000055553 Kxd1 ENSMUST00000121623 ENSMUSP00000113804 TRANSLATION protein_coding - - 5 232.0 0.0 6.5 0.0 335.6 0.0 -4,-5 0.7745 2 12.0 PRINCIPAL:1 ENSMUSG00000055553 Kxd1 ENSMUST00000137610 ENSMUSP00000121539 TRANSLATION protein_coding stop - 5 100.0 0.0 3.0 0.0 108.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000055553 Kxd1 ENSMUST00000118850 ENSMUSP00000113816 TRANSLATION protein_coding - - 2 219.0 0.0 3.0 0.0 108.2 0.0 -4,0 0.0058 2 0.0 MINOR ENSMUSG00000074442 Defa31 ENSMUST00000098896 ENSMUSP00000096495 TRANSLATION protein_coding - CCDS52505.1 1 93.0 0.0 1.0 0.1 122.0 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025808 Ccdc7a ENSMUST00000216104 ENSMUSP00000150983 TRANSLATION protein_coding start - 5 277.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0033 - -2.0 MINOR ENSMUSG00000025808 Ccdc7a ENSMUST00000125112 ENSMUSP00000117961 TRANSLATION protein_coding stop - 5 348.0 0.0 0.0 0.0 254.1 0.0 -4,-6 0.0783 - -2.0 MINOR ENSMUSG00000025808 Ccdc7a ENSMUST00000108747 ENSMUSP00000104379 TRANSLATION protein_coding - CCDS57649.1 1 160.0 0.0 0.0 0.0 214.8 0.0 -4,-6 0.0675 - 0.0 MINOR ENSMUSG00000025808 Ccdc7a ENSMUST00000217343 ENSMUSP00000150598 TRANSLATION nonsense_mediated_decay start - 5 107.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025808 Ccdc7a ENSMUST00000095158 ENSMUSP00000092780 TRANSLATION protein_coding - CCDS40524.1 1 371.0 0.0 0.0 0.0 254.1 0.0 -4,-6 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000025808 Ccdc7a ENSMUST00000214889 ENSMUSP00000149790 TRANSLATION protein_coding - - 5 1642.0 0.0 0.0 0.0 254.1 0.0 -4,-6 0.3985 - 2.0 ALTERNATIVE:2 ENSMUSG00000025808 Ccdc7a ENSMUST00000213135 ENSMUSP00000150055 TRANSLATION protein_coding start - 5 138.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037492 Zmat4 ENSMUST00000123412 ENSMUSP00000121626 TRANSLATION nonsense_mediated_decay - - 2 225.0 15.0 3.514 2.0 115.0 0.0 -4,-5 0.2237 5 -2.0 MINOR ENSMUSG00000037492 Zmat4 ENSMUST00000131410 ENSMUSP00000115719 TRANSLATION protein_coding stop - 3 96.0 7.0 2.614 0.0 53.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037492 Zmat4 ENSMUST00000146774 - NO_TRANSLATION retained_intron ENSMUSG00000037492 Zmat4 ENSMUST00000042352 ENSMUSP00000049430 TRANSLATION protein_coding - CCDS22192.1 1 229.0 15.0 3.514 19.5 115.0 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000037492 Zmat4 ENSMUST00000208021 - NO_TRANSLATION retained_intron ENSMUSG00000037492 Zmat4 ENSMUST00000207301 ENSMUSP00000146734 TRANSLATION protein_coding - CCDS85514.1 1 160.0 11.0 1.65 0.0 88.2 0.0 -4,-7 0.0283 4 10.002 MINOR ENSMUSG00000037492 Zmat4 ENSMUST00000135747 ENSMUSP00000121337 TRANSLATION protein_coding stop - 3 68.0 4.0 1.6 0.0 26.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000009630 Ppp2cb ENSMUST00000009774 ENSMUSP00000009774 TRANSLATION protein_coding - CCDS22233.1 1 309.0 10.0 6.75 34.9 121.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000052446 Zfp961 ENSMUST00000147033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052446 Zfp961 ENSMUST00000138304 ENSMUSP00000148387 TRANSLATION nonsense_mediated_decay - - 1 64.0 0.0 1.0 0.0 85.3 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000052446 Zfp961 ENSMUST00000144807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052446 Zfp961 ENSMUST00000139781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052446 Zfp961 ENSMUST00000151168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052446 Zfp961 ENSMUST00000145256 ENSMUSP00000148800 TRANSLATION nonsense_mediated_decay - - 5 78.0 0.0 1.099 0.0 89.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000052446 Zfp961 ENSMUST00000131237 ENSMUSP00000122942 TRANSLATION protein_coding - - 3 425.0 44.0 3.0 0.1 272.7 0.0 -4,-5 0.1283 1 14.0 ALTERNATIVE:2 ENSMUSG00000052446 Zfp961 ENSMUST00000132848 ENSMUSP00000114730 TRANSLATION protein_coding - - 5 194.0 4.0 2.45 0.0 109.0 0.0 -4,-1 0.0004 1 4.902 MINOR ENSMUSG00000052446 Zfp961 ENSMUST00000109997 ENSMUSP00000105623 TRANSLATION protein_coding - CCDS52591.1 2 444.0 44.0 3.0 0.0 272.4 0.0 -4,-1 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000052446 Zfp961 ENSMUST00000136516 ENSMUSP00000122589 TRANSLATION protein_coding - - 2 68.0 0.0 1.0 0.0 87.1 0.0 -4,-1 0.0 - 1.998 MINOR ENSMUSG00000052446 Zfp961 ENSMUST00000136878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074151 Nlrc5 ENSMUST00000183287 - NO_TRANSLATION retained_intron ENSMUSG00000074151 Nlrc5 ENSMUST00000212382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074151 Nlrc5 ENSMUST00000182409 ENSMUSP00000148540 TRANSLATION protein_coding - - 5 1393.0 7.0 9.225 0.0 132.2 0.0 -4,-5 0.0296 4 8.508 MINOR ENSMUSG00000074151 Nlrc5 ENSMUST00000183132 ENSMUSP00000138166 TRANSLATION nonsense_mediated_decay start - 5 56.0 0.0 0.84 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000074151 Nlrc5 ENSMUST00000212220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074151 Nlrc5 ENSMUST00000211816 ENSMUSP00000148677 TRANSLATION protein_coding - CCDS59741.1 5 1915.0 7.0 17.265 0.0 190.4 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000074151 Nlrc5 ENSMUST00000053085 ENSMUSP00000138322 TRANSLATION protein_coding - CCDS59741.1 1 1915.0 7.0 17.265 0.0 190.4 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000074151 Nlrc5 ENSMUST00000137032 - NO_TRANSLATION retained_intron ENSMUSG00000035671 Zswim4 ENSMUST00000039480 ENSMUSP00000040078 TRANSLATION protein_coding - CCDS22471.1 1 1101.0 0.0 0.0 3.6 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:1 ENSMUSG00000031776 Arl2bp ENSMUST00000109527 ENSMUSP00000105153 TRANSLATION protein_coding - CCDS40440.1 1 152.0 0.0 4.5 4.6 117.2 0.0 -4,-5 0.2625 2 11.81 MINOR ENSMUSG00000031776 Arl2bp ENSMUST00000212580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031776 Arl2bp ENSMUST00000211858 ENSMUSP00000148695 TRANSLATION protein_coding - - 5 91.0 0.0 2.75 0.0 68.1 0.0 -4,-5 0.0 - 4.554 MINOR ENSMUSG00000031776 Arl2bp ENSMUST00000034228 ENSMUSP00000034228 TRANSLATION protein_coding - CCDS22545.1 1 163.0 0.0 5.0 18.7 117.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031776 Arl2bp ENSMUST00000212877 - NO_TRANSLATION retained_intron ENSMUSG00000031776 Arl2bp ENSMUST00000212254 - NO_TRANSLATION retained_intron ENSMUSG00000063049 Ing2 ENSMUST00000080353 ENSMUSP00000079226 TRANSLATION protein_coding - CCDS22298.1 1 281.0 8.0 0.9 9.5 92.6 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000063049 Ing2 ENSMUST00000146625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063049 Ing2 ENSMUST00000125536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047171 Helt ENSMUST00000210696 - NO_TRANSLATION retained_intron ENSMUSG00000047171 Helt ENSMUST00000210652 ENSMUSP00000147465 TRANSLATION protein_coding - - 1 202.0 0.0 1.13 0.0 55.7 0.0 -4,-5 0.0022 - 7.11 MINOR ENSMUSG00000047171 Helt ENSMUST00000058636 ENSMUSP00000054823 TRANSLATION protein_coding - CCDS22290.1 1 240.0 0.0 1.88 12.6 95.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000005705 Agrp ENSMUST00000194091 ENSMUSP00000142044 TRANSLATION protein_coding - CCDS22605.1 2 131.0 0.0 1.5 8.0 116.1 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000005705 Agrp ENSMUST00000005849 ENSMUSP00000005849 TRANSLATION protein_coding - CCDS22605.1 1 131.0 0.0 1.5 8.0 116.1 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000005705 Agrp ENSMUST00000194654 ENSMUSP00000141783 TRANSLATION protein_coding stop - 2 118.0 0.0 1.0 0.0 109.5 0.0 4,-1 0.0288 2 -2.0 MINOR ENSMUSG00000031832 Taf1c ENSMUST00000147964 ENSMUSP00000118480 TRANSLATION nonsense_mediated_decay - - 1 220.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0378 - -2.0 MINOR ENSMUSG00000031832 Taf1c ENSMUST00000144379 - NO_TRANSLATION retained_intron ENSMUSG00000031832 Taf1c ENSMUST00000126547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031832 Taf1c ENSMUST00000212929 - NO_TRANSLATION retained_intron ENSMUSG00000031832 Taf1c ENSMUST00000093099 ENSMUSP00000090789 TRANSLATION protein_coding - CCDS40493.1 1 836.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.937 6 0.0 PRINCIPAL:1 ENSMUSG00000031832 Taf1c ENSMUST00000131652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000738 Spg7 ENSMUST00000128234 ENSMUSP00000120793 TRANSLATION protein_coding start - 3 253.0 7.0 5.58 0.0 172.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000000738 Spg7 ENSMUST00000212364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000738 Spg7 ENSMUST00000135991 ENSMUSP00000118066 TRANSLATION protein_coding start - 5 90.0 3.0 1.85 0.0 100.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000000738 Spg7 ENSMUST00000125975 ENSMUSP00000120361 TRANSLATION protein_coding - - 5 676.0 18.0 11.56 0.0 416.0 1.0 -4,-5 0.0922 17 14.0 ALTERNATIVE:2 ENSMUSG00000000738 Spg7 ENSMUST00000142541 ENSMUSP00000119017 TRANSLATION protein_coding stop - 5 230.0 3.0 2.13 0.0 39.0 1.0 -4,-5 0.0027 4 -2.0 MINOR ENSMUSG00000000738 Spg7 ENSMUST00000153285 ENSMUSP00000115039 TRANSLATION protein_coding - - 5 744.0 18.0 10.56 0.0 399.2 1.0 -4,0 0.0461 17 11.336 MINOR ENSMUSG00000000738 Spg7 ENSMUST00000152972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000738 Spg7 ENSMUST00000108868 ENSMUSP00000104496 TRANSLATION protein_coding - - 2 145.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0007 1 0.0 MINOR ENSMUSG00000000738 Spg7 ENSMUST00000142150 - NO_TRANSLATION retained_intron ENSMUSG00000000738 Spg7 ENSMUST00000149248 ENSMUSP00000119552 TRANSLATION protein_coding - CCDS40508.1 1 781.0 18.0 11.56 1.1 416.0 1.0 -4,0 1.0 18 15.0 PRINCIPAL:2 ENSMUSG00000000738 Spg7 ENSMUST00000128803 - NO_TRANSLATION retained_intron ENSMUSG00000000738 Spg7 ENSMUST00000153492 ENSMUSP00000133602 TRANSLATION nonsense_mediated_decay start - 5 209.0 3.0 1.8 0.0 39.0 1.0 1,-3 0.0039 4 -2.0 MINOR ENSMUSG00000000738 Spg7 ENSMUST00000130787 - NO_TRANSLATION retained_intron ENSMUSG00000031842 Pde4c ENSMUST00000149272 - NO_TRANSLATION retained_intron ENSMUSG00000031842 Pde4c ENSMUST00000123739 ENSMUSP00000119312 TRANSLATION protein_coding stop - 5 178.0 0.0 0.5 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000031842 Pde4c ENSMUST00000110095 ENSMUSP00000105722 TRANSLATION protein_coding - CCDS80891.1 1 686.0 7.0 9.38 0.0 307.9 0.0 -4,-2 1.0 6 14.0 PRINCIPAL:2 ENSMUSG00000031842 Pde4c ENSMUST00000034307 ENSMUSP00000034307 TRANSLATION protein_coding - CCDS22378.1 1 652.0 6.0 8.38 0.0 235.7 0.0 -4,-2 0.0374 6 9.144 MINOR ENSMUSG00000031842 Pde4c ENSMUST00000239435 ENSMUSP00000159363 TRANSLATION protein_coding - - - 711.0 6.0 8.38 0.0 235.7 0.0 -4,-7 0.0298 5 9.144 MINOR ENSMUSG00000031842 Pde4c ENSMUST00000239487 ENSMUSP00000159330 TRANSLATION protein_coding - CCDS22378.1 - 652.0 6.0 8.38 0.0 235.7 0.0 -4,-2 0.0374 6 9.144 MINOR ENSMUSG00000031842 Pde4c ENSMUST00000224874 ENSMUSP00000153213 TRANSLATION protein_coding - - - 646.0 7.0 9.38 0.0 307.9 0.0 -4,0 0.1213 3 14.0 ALTERNATIVE:2 ENSMUSG00000031842 Pde4c ENSMUST00000128685 - NO_TRANSLATION retained_intron ENSMUSG00000031709 Tbc1d9 ENSMUST00000142673 - NO_TRANSLATION retained_intron ENSMUSG00000031709 Tbc1d9 ENSMUST00000093393 ENSMUSP00000091093 TRANSLATION protein_coding - CCDS52607.1 1 1264.0 4.0 4.62 10.4 289.0 0.0 -4,-7 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000031709 Tbc1d9 ENSMUST00000034145 ENSMUSP00000034145 TRANSLATION protein_coding - CCDS22448.1 1 1031.0 4.0 3.92 0.0 158.0 0.0 -4,-7 0.0425 7 8.602 MINOR ENSMUSG00000031553 Adam3 ENSMUST00000171611 ENSMUSP00000126617 TRANSLATION protein_coding - - 1 352.0 1.0 2.25 0.0 251.9 0.0 3,-2 0.0 4 0.0 MINOR ENSMUSG00000031553 Adam3 ENSMUST00000171438 ENSMUSP00000132651 TRANSLATION protein_coding - CCDS22196.1 2 822.0 14.0 5.56 0.0 436.1 1.0 3,-2 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000031553 Adam3 ENSMUST00000167431 ENSMUSP00000127479 TRANSLATION protein_coding start - 3 73.0 0.0 0.36 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031553 Adam3 ENSMUST00000167703 ENSMUSP00000132634 TRANSLATION nonsense_mediated_decay - - 3 65.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0033 1 -2.0 MINOR ENSMUSG00000031553 Adam3 ENSMUST00000170740 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031553 Adam3 ENSMUST00000169598 ENSMUSP00000130818 TRANSLATION nonsense_mediated_decay - - 5 94.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0033 2 -2.0 MINOR ENSMUSG00000031553 Adam3 ENSMUST00000168662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031553 Adam3 ENSMUST00000033958 ENSMUSP00000033958 TRANSLATION protein_coding - CCDS22196.1 1 822.0 14.0 5.56 0.0 436.1 1.0 3,-2 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000031553 Adam3 ENSMUST00000166986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031553 Adam3 ENSMUST00000170318 ENSMUSP00000132620 TRANSLATION nonsense_mediated_decay - - 1 120.0 0.0 0.0 0.0 45.9 0.0 3,-2 0.0006 2 -2.0 MINOR ENSMUSG00000031860 Pbx4 ENSMUST00000132899 ENSMUSP00000118287 TRANSLATION nonsense_mediated_decay - - 1 74.0 0.0 0.0 0.0 68.6 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000031860 Pbx4 ENSMUST00000156251 - NO_TRANSLATION retained_intron ENSMUSG00000031860 Pbx4 ENSMUST00000156319 ENSMUSP00000119526 TRANSLATION nonsense_mediated_decay - - 1 78.0 0.0 0.0 0.0 67.5 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000031860 Pbx4 ENSMUST00000134777 ENSMUSP00000122281 TRANSLATION nonsense_mediated_decay - - 1 86.0 0.0 0.0 0.0 69.1 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000031860 Pbx4 ENSMUST00000135952 - NO_TRANSLATION retained_intron ENSMUSG00000031860 Pbx4 ENSMUST00000131637 ENSMUSP00000121369 TRANSLATION protein_coding stop - 5 108.0 0.0 0.0 0.0 67.5 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000031860 Pbx4 ENSMUST00000151975 - NO_TRANSLATION retained_intron ENSMUSG00000031860 Pbx4 ENSMUST00000132259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031860 Pbx4 ENSMUST00000081503 ENSMUSP00000080219 TRANSLATION protein_coding - CCDS22352.1 5 378.0 0.0 2.597 0.1 352.1 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031628 Casp3 ENSMUST00000211115 ENSMUSP00000147767 TRANSLATION protein_coding - CCDS22294.1 1 277.0 4.0 5.0 11.8 184.0 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000031628 Casp3 ENSMUST00000093517 ENSMUSP00000091238 TRANSLATION protein_coding - CCDS22294.1 1 277.0 4.0 5.0 11.8 184.0 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000031628 Casp3 ENSMUST00000209668 - NO_TRANSLATION retained_intron ENSMUSG00000031628 Casp3 ENSMUST00000210534 ENSMUSP00000147700 TRANSLATION protein_coding - - 5 133.0 0.0 2.45 0.0 31.4 0.0 -4,-5 0.0 4 0.9 MINOR ENSMUSG00000036180 Gatad2a ENSMUST00000065169 ENSMUSP00000070229 TRANSLATION protein_coding - CCDS22355.1 1 630.0 5.0 1.5 5.5 70.5 0.0 -4,-5 1.0 19 15.0 PRINCIPAL:4 ENSMUSG00000036180 Gatad2a ENSMUST00000177851 ENSMUSP00000137386 TRANSLATION protein_coding - - 5 614.0 5.0 1.5 0.1 70.5 0.0 -4,-5 0.153 18 13.0 MINOR ENSMUSG00000036180 Gatad2a ENSMUST00000212277 ENSMUSP00000148637 TRANSLATION protein_coding stop - 3 161.0 0.0 1.0 0.0 46.1 0.0 -4,-5 0.0008 5 -2.0 MINOR ENSMUSG00000036180 Gatad2a ENSMUST00000212478 ENSMUSP00000148474 TRANSLATION protein_coding - CCDS52567.1 5 629.0 5.0 1.5 4.4 70.5 0.0 -4,-5 0.9804 19 14.512 ALTERNATIVE:2 ENSMUSG00000036180 Gatad2a ENSMUST00000211960 ENSMUSP00000148579 TRANSLATION protein_coding stop - 3 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036180 Gatad2a ENSMUST00000116463 ENSMUSP00000112164 TRANSLATION protein_coding - CCDS52567.1 1 629.0 5.0 1.5 4.4 70.5 0.0 -4,-5 0.9804 19 14.512 ALTERNATIVE:2 ENSMUSG00000071176 Arhgef10 ENSMUST00000161162 ENSMUSP00000125606 TRANSLATION protein_coding stop - 1 579.0 0.0 2.85 0.0 134.6 0.0 -4,-5 0.0167 4 -2.0 MINOR ENSMUSG00000071176 Arhgef10 ENSMUST00000110800 ENSMUSP00000106424 TRANSLATION protein_coding - CCDS40241.1 1 1306.0 0.0 3.675 0.0 136.2 0.0 -4,-5 0.6136 13 8.0 ALTERNATIVE:2 ENSMUSG00000071176 Arhgef10 ENSMUST00000160619 - NO_TRANSLATION retained_intron ENSMUSG00000071176 Arhgef10 ENSMUST00000084207 ENSMUSP00000081225 TRANSLATION protein_coding - CCDS40240.1 1 1345.0 0.0 3.675 0.0 136.2 0.0 -4,-5 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000071176 Arhgef10 ENSMUST00000162444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071176 Arhgef10 ENSMUST00000162636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071176 Arhgef10 ENSMUST00000163062 ENSMUSP00000125526 TRANSLATION protein_coding start - 5 988.0 0.0 3.675 0.0 136.2 0.0 -4,-5 0.1927 13 -2.0 MINOR ENSMUSG00000031738 Irx6 ENSMUST00000167261 ENSMUSP00000127446 TRANSLATION protein_coding - CCDS80913.1 1 438.0 0.0 1.0 7.6 57.4 0.0 -3,-1 0.9864 - 10.0 ALTERNATIVE:1 ENSMUSG00000031738 Irx6 ENSMUST00000034185 ENSMUSP00000034185 TRANSLATION protein_coding - CCDS40428.1 1 439.0 0.0 1.0 7.6 57.4 0.0 -3,-1 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000048310 Pskh1 ENSMUST00000049699 ENSMUSP00000061700 TRANSLATION protein_coding - CCDS22619.1 1 424.0 18.0 1.8 19.7 245.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000019428 Fkbp8 ENSMUST00000128513 - NO_TRANSLATION retained_intron ENSMUSG00000019428 Fkbp8 ENSMUST00000119425 ENSMUSP00000113528 TRANSLATION protein_coding stop - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019428 Fkbp8 ENSMUST00000134893 ENSMUSP00000118843 TRANSLATION nonsense_mediated_decay start - 3 36.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019428 Fkbp8 ENSMUST00000125741 - NO_TRANSLATION retained_intron ENSMUSG00000019428 Fkbp8 ENSMUST00000119353 ENSMUSP00000112527 TRANSLATION protein_coding - CCDS52576.1 1 402.0 0.0 6.75 0.1 83.4 1.0 -4,-5 0.7083 9 8.0 ALTERNATIVE:2 ENSMUSG00000019428 Fkbp8 ENSMUST00000123052 - NO_TRANSLATION retained_intron ENSMUSG00000019428 Fkbp8 ENSMUST00000119698 ENSMUSP00000114069 TRANSLATION protein_coding - CCDS52575.1 1 403.0 0.0 6.75 0.1 84.0 1.0 -4,-5 1.0 10 8.0 PRINCIPAL:2 ENSMUSG00000019428 Fkbp8 ENSMUST00000075491 ENSMUSP00000074935 TRANSLATION protein_coding - CCDS52575.1 1 403.0 0.0 6.75 0.1 84.0 1.0 -4,-5 1.0 10 8.0 PRINCIPAL:2 ENSMUSG00000019428 Fkbp8 ENSMUST00000126613 - NO_TRANSLATION retained_intron ENSMUSG00000019428 Fkbp8 ENSMUST00000144766 - NO_TRANSLATION retained_intron ENSMUSG00000019428 Fkbp8 ENSMUST00000134299 - NO_TRANSLATION retained_intron ENSMUSG00000031505 Naxd ENSMUST00000178721 ENSMUSP00000136535 TRANSLATION protein_coding - CCDS80857.1 5 272.0 4.0 6.0 0.8 153.1 0.0 -3,0 0.0152 11 4.122 MINOR ENSMUSG00000031505 Naxd ENSMUST00000210316 - NO_TRANSLATION retained_intron ENSMUSG00000031505 Naxd ENSMUST00000177955 ENSMUSP00000136363 TRANSLATION protein_coding - CCDS57604.1 1 327.0 14.0 8.5 9.9 201.1 0.0 -3,0 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000031505 Naxd ENSMUST00000178817 ENSMUSP00000137488 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 1.5 0.0 22.5 0.0 -3,0 0.0 2 -2.0 MINOR ENSMUSG00000031505 Naxd ENSMUST00000178382 - NO_TRANSLATION retained_intron ENSMUSG00000031505 Naxd ENSMUST00000209932 - NO_TRANSLATION retained_intron ENSMUSG00000031505 Naxd ENSMUST00000180269 - NO_TRANSLATION retained_intron ENSMUSG00000031505 Naxd ENSMUST00000033901 ENSMUSP00000033901 TRANSLATION protein_coding - CCDS22096.2 2 365.0 14.0 8.5 0.1 201.1 0.0 -2,-5 0.1829 17 18.0 MINOR ENSMUSG00000031505 Naxd ENSMUST00000178364 - NO_TRANSLATION retained_intron ENSMUSG00000031554 Adam5 ENSMUST00000118419 ENSMUSP00000112422 TRANSLATION protein_coding - CCDS52525.1 1 751.0 7.0 7.03 0.4 417.3 1.0 4,-1 1.0 5 14.0 PRINCIPAL:2 ENSMUSG00000031554 Adam5 ENSMUST00000130939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031554 Adam5 ENSMUST00000132180 ENSMUSP00000121272 TRANSLATION protein_coding start - 1 613.0 7.0 7.03 0.0 389.5 0.0 -4,-5 0.042 4 -2.0 MINOR ENSMUSG00000031554 Adam5 ENSMUST00000209935 ENSMUSP00000147290 TRANSLATION protein_coding - CCDS85515.1 1 699.0 7.0 7.03 0.0 417.3 0.0 4,-1 0.449 5 14.0 ALTERNATIVE:2 ENSMUSG00000031554 Adam5 ENSMUST00000050300 ENSMUSP00000052661 TRANSLATION protein_coding - CCDS72107.1 1 771.0 7.0 7.03 0.1 417.3 1.0 4,-1 0.6033 5 14.0 ALTERNATIVE:2 ENSMUSG00000048644 Ctxn1 ENSMUST00000053252 ENSMUSP00000057115 TRANSLATION protein_coding - CCDS40211.1 1 82.0 0.0 0.0 18.0 137.2 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000013033 Adgrl1 ENSMUST00000139575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013033 Adgrl1 ENSMUST00000132500 ENSMUSP00000119100 TRANSLATION protein_coding - - 5 1511.0 0.0 12.61 0.1 1331.5 11.0 0,-4 0.3011 37 7.8 MINOR ENSMUSG00000013033 Adgrl1 ENSMUST00000150674 - NO_TRANSLATION retained_intron ENSMUSG00000013033 Adgrl1 ENSMUST00000152978 ENSMUSP00000115295 TRANSLATION protein_coding - - 5 1516.0 0.0 12.61 0.1 1331.5 11.0 0,-4 0.3006 39 7.8 MINOR ENSMUSG00000013033 Adgrl1 ENSMUST00000141661 - NO_TRANSLATION retained_intron ENSMUSG00000013033 Adgrl1 ENSMUST00000131717 ENSMUSP00000118579 TRANSLATION protein_coding - - 1 1295.0 0.0 9.61 1.2 1222.2 11.0 -4,-5 0.1536 27 1.087 MINOR ENSMUSG00000013033 Adgrl1 ENSMUST00000124355 ENSMUSP00000116064 TRANSLATION nonsense_mediated_decay - - 5 141.0 0.0 2.0 0.0 85.6 0.0 0,-4 0.0009 4 -2.0 MINOR ENSMUSG00000013033 Adgrl1 ENSMUST00000131018 ENSMUSP00000117720 TRANSLATION protein_coding start/stop - 3 213.0 0.0 0.0 0.0 251.6 0.0 -4,-7 0.0001 5 -2.0 MINOR ENSMUSG00000013033 Adgrl1 ENSMUST00000141158 ENSMUSP00000118452 TRANSLATION protein_coding - CCDS52613.1 1 1466.0 0.0 12.61 7.1 1339.9 11.0 0,-4 1.0 35 10.613 ALTERNATIVE:1 ENSMUSG00000013033 Adgrl1 ENSMUST00000045393 ENSMUSP00000048422 TRANSLATION protein_coding - - 5 1471.0 0.0 12.61 8.0 1339.9 11.0 0,-4 0.937 37 11.0 PRINCIPAL:3 ENSMUSG00000031662 Snx20 ENSMUST00000209806 - NO_TRANSLATION retained_intron ENSMUSG00000031662 Snx20 ENSMUST00000034087 ENSMUSP00000034087 TRANSLATION protein_coding - CCDS22512.1 1 313.0 0.0 0.7 8.5 55.4 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000031445 Proz ENSMUST00000211453 ENSMUSP00000147328 TRANSLATION nonsense_mediated_decay - - 1 98.0 10.0 0.8 0.0 57.2 0.0 2,-3 0.0014 - -2.0 MINOR ENSMUSG00000031445 Proz ENSMUST00000210050 - NO_TRANSLATION retained_intron ENSMUSG00000031445 Proz ENSMUST00000033822 ENSMUSP00000033822 TRANSLATION protein_coding - CCDS22105.1 1 399.0 20.0 5.23 0.0 217.2 0.0 2,-3 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000031445 Proz ENSMUST00000211363 ENSMUSP00000147733 TRANSLATION protein_coding - - 1 241.0 20.0 4.43 0.0 174.6 0.0 2,-3 0.0041 2 13.842 MINOR ENSMUSG00000046354 Defb14 ENSMUST00000052601 ENSMUSP00000062781 TRANSLATION protein_coding - CCDS40253.1 1 67.0 0.0 1.0 9.7 39.6 0.0 4,-1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000115768 Dpep2nb ENSMUST00000227778 ENSMUSP00000153824 TRANSLATION protein_coding - - - 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000034308 Sdr42e1 ENSMUST00000174450 ENSMUSP00000133837 TRANSLATION protein_coding stop - 2 189.0 28.0 1.75 0.0 138.2 0.0 -4,-5 0.0012 1 -2.0 MINOR ENSMUSG00000034308 Sdr42e1 ENSMUST00000037955 ENSMUSP00000044457 TRANSLATION protein_coding - CCDS22701.1 1 394.0 28.0 2.75 12.6 226.1 2.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000034308 Sdr42e1 ENSMUST00000173522 ENSMUSP00000133782 TRANSLATION protein_coding - CCDS22701.1 1 394.0 28.0 2.75 12.6 226.1 2.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000036686 Cc2d1a ENSMUST00000117424 ENSMUSP00000112556 TRANSLATION protein_coding - - 5 897.0 0.0 5.407 0.1 31.3 0.0 -4,-2 0.1868 19 8.0 ALTERNATIVE:2 ENSMUSG00000036686 Cc2d1a ENSMUST00000154029 - NO_TRANSLATION retained_intron ENSMUSG00000036686 Cc2d1a ENSMUST00000040383 ENSMUSP00000046449 TRANSLATION protein_coding - CCDS40407.1 1 943.0 0.0 5.407 0.0 31.3 0.0 -4,-2 1.0 22 8.0 PRINCIPAL:2 ENSMUSG00000036686 Cc2d1a ENSMUST00000126364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031635 Anxa10 ENSMUST00000034052 ENSMUSP00000034052 TRANSLATION protein_coding - CCDS52558.1 1 324.0 4.0 9.58 17.3 283.5 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000031635 Anxa10 ENSMUST00000034054 ENSMUSP00000034054 TRANSLATION protein_coding - CCDS52557.1 1 304.0 4.0 9.16 0.0 248.7 0.0 -4,-5 0.0368 5 13.072 MINOR ENSMUSG00000031635 Anxa10 ENSMUST00000210799 - NO_TRANSLATION retained_intron ENSMUSG00000054162 Spock3 ENSMUST00000117377 ENSMUSP00000113797 TRANSLATION protein_coding - CCDS57622.1 1 433.0 3.0 2.49 0.0 225.6 0.0 1,-3 1.0 6 11.0 PRINCIPAL:2 ENSMUSG00000054162 Spock3 ENSMUST00000119068 ENSMUSP00000112930 TRANSLATION protein_coding - CCDS22326.1 5 436.0 3.0 2.49 0.0 225.6 0.0 1,-3 0.6554 6 11.0 ALTERNATIVE:2 ENSMUSG00000054162 Spock3 ENSMUST00000138398 - NO_TRANSLATION retained_intron ENSMUSG00000054162 Spock3 ENSMUST00000118003 ENSMUSP00000113683 TRANSLATION protein_coding - CCDS22326.1 5 436.0 3.0 2.49 0.0 225.6 0.0 1,-3 0.6554 6 11.0 ALTERNATIVE:2 ENSMUSG00000054162 Spock3 ENSMUST00000093480 ENSMUSP00000091192 TRANSLATION protein_coding - CCDS22326.1 5 436.0 3.0 2.49 0.0 225.6 0.0 1,-3 0.6554 6 11.0 ALTERNATIVE:2 ENSMUSG00000054162 Spock3 ENSMUST00000141513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039328 Rnf122 ENSMUST00000209547 - NO_TRANSLATION retained_intron ENSMUSG00000039328 Rnf122 ENSMUST00000162640 - NO_TRANSLATION retained_intron ENSMUSG00000039328 Rnf122 ENSMUST00000216520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039328 Rnf122 ENSMUST00000046941 ENSMUSP00000040478 TRANSLATION protein_coding - CCDS22220.1 1 154.0 8.0 3.55 28.3 47.2 2.0 -4,-6 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000039328 Rnf122 ENSMUST00000217278 ENSMUSP00000150893 TRANSLATION protein_coding - - 1 155.0 8.0 3.55 28.3 47.2 2.0 -4,-6 0.8802 - 18.0 ALTERNATIVE:1 ENSMUSG00000018796 Acsl1 ENSMUST00000135955 ENSMUSP00000117546 TRANSLATION protein_coding stop - 3 136.0 0.0 0.855 0.0 0.0 2.0 -4,-5 0.0002 9 -2.0 MINOR ENSMUSG00000018796 Acsl1 ENSMUST00000128746 - NO_TRANSLATION retained_intron ENSMUSG00000018796 Acsl1 ENSMUST00000133161 - NO_TRANSLATION retained_intron ENSMUSG00000018796 Acsl1 ENSMUST00000110372 ENSMUSP00000106001 TRANSLATION protein_coding - CCDS22291.1 1 699.0 22.0 10.922 24.8 394.2 2.0 -4,-5 1.0 31 16.0 PRINCIPAL:4 ENSMUSG00000018796 Acsl1 ENSMUST00000034046 ENSMUSP00000034046 TRANSLATION protein_coding - CCDS22291.1 1 699.0 22.0 10.922 24.8 394.2 2.0 -4,-5 1.0 31 16.0 PRINCIPAL:4 ENSMUSG00000018796 Acsl1 ENSMUST00000152423 ENSMUSP00000118845 TRANSLATION protein_coding start - 5 95.0 4.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018796 Acsl1 ENSMUST00000110371 ENSMUSP00000106000 TRANSLATION protein_coding - - 5 699.0 22.0 10.922 24.8 387.5 2.0 -4,-5 0.839 31 16.0 ALTERNATIVE:1 ENSMUSG00000018796 Acsl1 ENSMUST00000210929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018796 Acsl1 ENSMUST00000130563 ENSMUSP00000114473 TRANSLATION protein_coding stop - 2 86.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0012 4 -2.0 MINOR ENSMUSG00000018796 Acsl1 ENSMUST00000211289 - NO_TRANSLATION retained_intron ENSMUSG00000018796 Acsl1 ENSMUST00000211644 ENSMUSP00000147647 TRANSLATION protein_coding stop - 2 58.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031872 Bean1 ENSMUST00000213077 ENSMUSP00000148283 TRANSLATION protein_coding - - 3 150.0 0.0 0.0 1.8 0.0 0.0 -4,-5 0.3091 - 0.308 MINOR ENSMUSG00000031872 Bean1 ENSMUST00000164076 ENSMUSP00000132056 TRANSLATION protein_coding - CCDS52647.1 1 194.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1229 - 0.0 MINOR ENSMUSG00000031872 Bean1 ENSMUST00000167633 ENSMUSP00000131530 TRANSLATION protein_coding - CCDS52646.1 5 255.0 0.0 0.6 3.6 0.0 2.0 -4,-1 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000031872 Bean1 ENSMUST00000093245 ENSMUSP00000090931 TRANSLATION protein_coding - CCDS52646.1 1 255.0 0.0 0.6 3.6 0.0 2.0 -4,-1 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000031872 Bean1 ENSMUST00000171018 ENSMUSP00000129403 TRANSLATION protein_coding - CCDS52645.1 1 326.0 0.0 0.6 0.0 0.0 2.0 -4,-5 0.2548 - 6.0 ALTERNATIVE:2 ENSMUSG00000031872 Bean1 ENSMUST00000212979 ENSMUSP00000148571 TRANSLATION protein_coding - CCDS52645.1 5 326.0 0.0 0.6 0.0 0.0 2.0 -4,-5 0.2548 - 6.0 ALTERNATIVE:2 ENSMUSG00000069971 4933402J07Rik ENSMUST00000093342 ENSMUSP00000091033 TRANSLATION protein_coding - CCDS52626.1 1 270.0 0.0 0.0 0.1 406.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031840 Rab3a ENSMUST00000110092 ENSMUSP00000105719 TRANSLATION protein_coding - CCDS22379.1 1 220.0 21.0 4.25 36.9 205.6 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000031840 Rab3a ENSMUST00000034301 ENSMUSP00000034301 TRANSLATION protein_coding - CCDS22379.1 1 220.0 21.0 4.25 36.9 205.6 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000031840 Rab3a ENSMUST00000110093 ENSMUSP00000105720 TRANSLATION protein_coding - CCDS22379.1 1 220.0 21.0 4.25 36.9 205.6 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000031840 Rab3a ENSMUST00000143118 ENSMUSP00000123384 TRANSLATION protein_coding stop - 3 62.0 4.0 1.75 0.0 65.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031840 Rab3a ENSMUST00000130468 - NO_TRANSLATION retained_intron ENSMUSG00000031840 Rab3a ENSMUST00000110090 ENSMUSP00000105717 TRANSLATION protein_coding - CCDS22379.1 3 220.0 21.0 4.25 36.9 205.6 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000074030 Exoc8 ENSMUST00000098312 ENSMUSP00000095915 TRANSLATION protein_coding - CCDS22777.1 - 716.0 0.0 0.2 1.1 253.9 0.0 -4,-2 1.0 20 13.0 PRINCIPAL:1 ENSMUSG00000060470 Adgrg3 ENSMUST00000051259 ENSMUSP00000051079 TRANSLATION protein_coding - CCDS22554.1 1 542.0 0.0 5.98 0.4 155.5 0.0 1,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000060470 Adgrg3 ENSMUST00000212558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060470 Adgrg3 ENSMUST00000211974 - NO_TRANSLATION retained_intron ENSMUSG00000060470 Adgrg3 ENSMUST00000212570 ENSMUSP00000148483 TRANSLATION nonsense_mediated_decay start - 1 213.0 0.0 0.88 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000060470 Adgrg3 ENSMUST00000211994 - NO_TRANSLATION retained_intron ENSMUSG00000060470 Adgrg3 ENSMUST00000212951 - NO_TRANSLATION retained_intron ENSMUSG00000031492 Chrnb3 ENSMUST00000211104 ENSMUSP00000147672 TRANSLATION protein_coding - - 1 454.0 0.0 3.3 0.0 421.4 4.0 0,-4 0.0322 - 7.944 MINOR ENSMUSG00000031492 Chrnb3 ENSMUST00000060943 ENSMUSP00000052297 TRANSLATION protein_coding - CCDS22217.1 1 464.0 0.0 4.1 1.1 462.3 5.0 0,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031492 Chrnb3 ENSMUST00000079463 ENSMUSP00000078428 TRANSLATION protein_coding - CCDS22216.1 1 449.0 0.0 3.6 0.0 408.9 5.0 0,-4 0.1072 - 7.794 MINOR ENSMUSG00000054320 Lrrc36 ENSMUST00000139900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054320 Lrrc36 ENSMUST00000109355 ENSMUSP00000104979 TRANSLATION protein_coding - CCDS52658.1 5 757.0 0.0 2.065 5.6 28.5 0.0 -4,-5 1.0 3 9.416 PRINCIPAL:4 ENSMUSG00000054320 Lrrc36 ENSMUST00000216765 ENSMUSP00000149382 TRANSLATION protein_coding - - 5 709.0 0.0 1.315 0.0 28.5 0.0 -4,-5 0.0451 2 5.822 MINOR ENSMUSG00000054320 Lrrc36 ENSMUST00000216457 ENSMUSP00000148889 TRANSLATION nonsense_mediated_decay start - 1 271.0 0.0 0.265 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054320 Lrrc36 ENSMUST00000213547 ENSMUSP00000150103 TRANSLATION protein_coding - - 5 755.0 0.0 2.065 7.5 28.5 0.0 -4,-5 0.8792 3 10.0 ALTERNATIVE:1 ENSMUSG00000054320 Lrrc36 ENSMUST00000067305 ENSMUSP00000066345 TRANSLATION protein_coding - CCDS22601.1 1 634.0 0.0 0.465 3.5 0.0 0.0 -4,-7 0.2447 3 2.12 MINOR ENSMUSG00000031660 Brd7 ENSMUST00000145609 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031660 Brd7 ENSMUST00000149841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031660 Brd7 ENSMUST00000131748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031660 Brd7 ENSMUST00000146370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031660 Brd7 ENSMUST00000135471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031660 Brd7 ENSMUST00000249591 ENSMUSP00000159801 TRANSLATION protein_coding - - - 692.0 0.0 2.9 0.0 363.2 0.0 -4,-2 0.0817 14 12.0 MINOR ENSMUSG00000031660 Brd7 ENSMUST00000034085 ENSMUSP00000034085 TRANSLATION protein_coding - CCDS22510.1 1 651.0 0.0 2.9 9.8 363.2 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000031660 Brd7 ENSMUST00000139675 - NO_TRANSLATION retained_intron ENSMUSG00000013158 4933405L10Rik ENSMUST00000211852 ENSMUSP00000148838 TRANSLATION protein_coding - - 1 298.0 0.0 0.0 0.0 228.2 0.0 -4,-5 0.7405 - 0.0 PRINCIPAL:2 ENSMUSG00000013158 4933405L10Rik ENSMUST00000013302 ENSMUSP00000013302 TRANSLATION protein_coding - CCDS52661.1 1 307.0 0.0 0.0 0.1 228.2 0.0 -4,-5 0.3955 - 0.0 ALTERNATIVE:2 ENSMUSG00000013158 4933405L10Rik ENSMUST00000212144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000107280 Potefam3c ENSMUST00000200846 ENSMUSP00000144411 TRANSLATION protein_coding - - 1 350.0 0.0 3.7 0.0 94.5 0.0 -4,-5 0.7499 - 12.0 PRINCIPAL:1 ENSMUSG00000074491 Clec4g ENSMUST00000062037 ENSMUSP00000059574 TRANSLATION protein_coding - CCDS22072.1 1 294.0 5.0 7.25 5.2 64.2 0.0 -4,-7 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000074491 Clec4g ENSMUST00000159612 - NO_TRANSLATION retained_intron ENSMUSG00000074491 Clec4g ENSMUST00000160527 ENSMUSP00000124493 TRANSLATION nonsense_mediated_decay start - 1 99.0 0.0 2.3 0.0 41.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000004568 Arhgef18 ENSMUST00000239102 ENSMUSP00000158969 TRANSLATION protein_coding - - - 1405.0 0.0 6.75 0.0 141.4 0.0 -4,-5 0.3116 22 8.0 ALTERNATIVE:2 ENSMUSG00000004568 Arhgef18 ENSMUST00000130587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004568 Arhgef18 ENSMUST00000208845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004568 Arhgef18 ENSMUST00000145360 - NO_TRANSLATION retained_intron ENSMUSG00000004568 Arhgef18 ENSMUST00000208363 ENSMUSP00000146396 TRANSLATION nonsense_mediated_decay - - 2 38.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000004568 Arhgef18 ENSMUST00000207059 - NO_TRANSLATION retained_intron ENSMUSG00000004568 Arhgef18 ENSMUST00000145394 ENSMUSP00000118410 TRANSLATION protein_coding stop - 3 107.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000004568 Arhgef18 ENSMUST00000238813 ENSMUSP00000159070 TRANSLATION protein_coding - - - 508.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.004 3 0.0 MINOR ENSMUSG00000004568 Arhgef18 ENSMUST00000131773 - NO_TRANSLATION retained_intron ENSMUSG00000004568 Arhgef18 ENSMUST00000238786 ENSMUSP00000158946 TRANSLATION protein_coding - - - 1126.0 0.0 6.75 0.0 141.4 0.0 -4,-7 0.2586 19 8.0 ALTERNATIVE:2 ENSMUSG00000004568 Arhgef18 ENSMUST00000004684 ENSMUSP00000004684 TRANSLATION protein_coding - CCDS22060.1 1 1021.0 0.0 6.75 0.4 141.4 0.0 -4,-7 1.0 18 8.0 PRINCIPAL:2 ENSMUSG00000004568 Arhgef18 ENSMUST00000098966 ENSMUSP00000096566 TRANSLATION protein_coding - CCDS52466.1 5 484.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0386 3 0.0 MINOR ENSMUSG00000004568 Arhgef18 ENSMUST00000156085 - NO_TRANSLATION retained_intron ENSMUSG00000031523 Dlc1 ENSMUST00000145245 - NO_TRANSLATION retained_intron ENSMUSG00000031523 Dlc1 ENSMUST00000163663 ENSMUSP00000132812 TRANSLATION protein_coding - CCDS57617.1 5 1543.0 0.0 8.55 0.1 338.9 0.0 -4,-5 0.3184 14 10.998 MINOR ENSMUSG00000031523 Dlc1 ENSMUST00000178717 - NO_TRANSLATION retained_intron ENSMUSG00000031523 Dlc1 ENSMUST00000036104 - NO_TRANSLATION retained_intron ENSMUSG00000031523 Dlc1 ENSMUST00000179501 ENSMUSP00000137498 TRANSLATION protein_coding stop - 3 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031523 Dlc1 ENSMUST00000156312 - NO_TRANSLATION retained_intron ENSMUSG00000031523 Dlc1 ENSMUST00000033923 ENSMUSP00000033923 TRANSLATION protein_coding - CCDS40322.1 1 1092.0 0.0 9.05 9.2 338.9 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000031523 Dlc1 ENSMUST00000179652 - NO_TRANSLATION retained_intron ENSMUSG00000031523 Dlc1 ENSMUST00000098826 ENSMUSP00000096425 TRANSLATION protein_coding - CCDS57616.1 1 1126.0 0.0 8.55 5.1 338.9 0.0 -4,-7 0.7536 12 12.498 MINOR ENSMUSG00000052616 Terb1 ENSMUST00000161520 ENSMUSP00000125431 TRANSLATION nonsense_mediated_decay - - 2 340.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0283 - -2.0 MINOR ENSMUSG00000052616 Terb1 ENSMUST00000159713 ENSMUSP00000124706 TRANSLATION nonsense_mediated_decay - - 2 339.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0283 - -2.0 MINOR ENSMUSG00000052616 Terb1 ENSMUST00000162014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052616 Terb1 ENSMUST00000064576 ENSMUSP00000067324 TRANSLATION protein_coding - CCDS22580.1 1 768.0 0.0 3.45 0.3 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000051176 Zfp42 ENSMUST00000211248 ENSMUSP00000147606 TRANSLATION protein_coding - CCDS22267.1 1 288.0 16.0 0.8 0.0 73.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000051176 Zfp42 ENSMUST00000082120 ENSMUSP00000080765 TRANSLATION protein_coding - CCDS22267.1 1 288.0 16.0 0.8 0.0 73.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000051176 Zfp42 ENSMUST00000209356 ENSMUSP00000147607 TRANSLATION protein_coding - CCDS22267.1 1 288.0 16.0 0.8 0.0 73.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000002190 Clgn ENSMUST00000002259 ENSMUSP00000002259 TRANSLATION protein_coding - CCDS22452.1 1 611.0 4.0 8.3 8.2 524.2 1.0 4,-1 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000002190 Clgn ENSMUST00000109831 ENSMUSP00000105457 TRANSLATION protein_coding - CCDS22452.1 1 611.0 4.0 8.3 8.2 524.2 1.0 4,-1 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000031788 Kifc3 ENSMUST00000212787 ENSMUSP00000148754 TRANSLATION protein_coding stop - 2 188.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000031788 Kifc3 ENSMUST00000212076 ENSMUSP00000148502 TRANSLATION protein_coding stop - 3 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0224 - -2.0 MINOR ENSMUSG00000031788 Kifc3 ENSMUST00000169748 ENSMUSP00000126784 TRANSLATION protein_coding - CCDS52639.1 1 778.0 17.0 7.3 0.0 333.5 0.0 -4,-7 0.0855 20 15.912 MINOR ENSMUSG00000031788 Kifc3 ENSMUST00000212842 ENSMUSP00000148788 TRANSLATION protein_coding stop - 3 129.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 1 -2.0 MINOR ENSMUSG00000031788 Kifc3 ENSMUST00000212656 - NO_TRANSLATION retained_intron ENSMUSG00000031788 Kifc3 ENSMUST00000211854 - NO_TRANSLATION retained_intron ENSMUSG00000031788 Kifc3 ENSMUST00000169353 ENSMUSP00000127427 TRANSLATION protein_coding - - 1 709.0 17.0 7.63 0.0 357.3 0.0 -4,-5 0.0564 17 18.0 MINOR ENSMUSG00000031788 Kifc3 ENSMUST00000212424 ENSMUSP00000148488 TRANSLATION protein_coding stop - 3 133.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 1 -2.0 MINOR ENSMUSG00000031788 Kifc3 ENSMUST00000034240 ENSMUSP00000034240 TRANSLATION protein_coding - CCDS52640.1 1 824.0 17.0 7.63 4.9 357.3 0.0 -4,0 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000031788 Kifc3 ENSMUST00000212786 ENSMUSP00000148654 TRANSLATION protein_coding stop - 3 2.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.032 - -2.0 MINOR ENSMUSG00000031788 Kifc3 ENSMUST00000213004 ENSMUSP00000148425 TRANSLATION protein_coding - CCDS52638.1 1 687.0 17.0 7.63 2.7 357.3 0.0 -4,-5 0.5734 16 18.872 MINOR ENSMUSG00000031788 Kifc3 ENSMUST00000212554 ENSMUSP00000148774 TRANSLATION protein_coding stop - 2 200.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 2 -2.0 MINOR ENSMUSG00000035057 Mgat4d ENSMUST00000139692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035057 Mgat4d ENSMUST00000038692 ENSMUSP00000041629 TRANSLATION protein_coding - CCDS22451.1 1 373.0 0.0 4.75 5.7 388.7 0.0 1,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000045246 Kcng4 ENSMUST00000061828 ENSMUSP00000056552 TRANSLATION protein_coding - CCDS22710.1 1 506.0 0.0 0.666 7.5 217.0 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031441 Atp11a ENSMUST00000133338 ENSMUSP00000120625 TRANSLATION nonsense_mediated_decay - - 1 291.0 0.0 7.35 0.0 109.4 3.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000031441 Atp11a ENSMUST00000125031 - NO_TRANSLATION retained_intron ENSMUSG00000031441 Atp11a ENSMUST00000152273 ENSMUSP00000121989 TRANSLATION protein_coding start - 3 163.0 0.0 3.71 0.0 150.3 6.0 -4,-7 0.0022 - -2.0 MINOR ENSMUSG00000031441 Atp11a ENSMUST00000132974 ENSMUSP00000117091 TRANSLATION protein_coding start - 1 590.0 1.0 11.94 0.0 287.2 14.0 -4,-6 0.0024 9 -2.0 MINOR ENSMUSG00000031441 Atp11a ENSMUST00000033818 ENSMUSP00000033818 TRANSLATION protein_coding - CCDS80858.1 1 1142.0 3.0 22.67 5.4 419.6 19.0 -4,-6 1.0 18 17.0 PRINCIPAL:1 ENSMUSG00000031441 Atp11a ENSMUST00000143359 ENSMUSP00000114312 TRANSLATION protein_coding start - 3 131.0 0.0 2.68 0.0 65.1 6.0 0,-4 0.0031 1 -2.0 MINOR ENSMUSG00000031441 Atp11a ENSMUST00000091237 ENSMUSP00000088779 TRANSLATION protein_coding - CCDS40223.1 1 1187.0 3.0 22.67 0.4 419.6 19.0 -4,-6 0.4428 20 15.0 MINOR ENSMUSG00000031441 Atp11a ENSMUST00000136918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031441 Atp11a ENSMUST00000139545 - NO_TRANSLATION retained_intron ENSMUSG00000031441 Atp11a ENSMUST00000131804 ENSMUSP00000121567 TRANSLATION protein_coding start - 5 89.0 0.0 1.13 0.0 0.0 3.0 -4,-5 0.0002 1 -2.0 MINOR ENSMUSG00000031441 Atp11a ENSMUST00000127197 - NO_TRANSLATION retained_intron ENSMUSG00000037656 Slc20a2 ENSMUST00000209305 ENSMUSP00000147392 TRANSLATION protein_coding stop - 2 28.0 0.0 0.0 0.0 0.0 1.0 0,-5 0.0073 - -2.0 MINOR ENSMUSG00000037656 Slc20a2 ENSMUST00000210854 ENSMUSP00000147570 TRANSLATION protein_coding stop - 2 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0104 - -2.0 MINOR ENSMUSG00000037656 Slc20a2 ENSMUST00000209347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037656 Slc20a2 ENSMUST00000210388 - NO_TRANSLATION retained_intron ENSMUSG00000037656 Slc20a2 ENSMUST00000067786 ENSMUSP00000065935 TRANSLATION protein_coding - CCDS22178.1 1 656.0 0.0 2.75 0.1 454.4 7.0 0,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000002949 Timm44 ENSMUST00000135755 - NO_TRANSLATION retained_intron ENSMUSG00000002949 Timm44 ENSMUST00000160549 - NO_TRANSLATION retained_intron ENSMUSG00000002949 Timm44 ENSMUST00000148672 - NO_TRANSLATION retained_intron ENSMUSG00000002949 Timm44 ENSMUST00000149827 - NO_TRANSLATION retained_intron ENSMUSG00000002949 Timm44 ENSMUST00000160371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002949 Timm44 ENSMUST00000161143 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002949 Timm44 ENSMUST00000147831 - NO_TRANSLATION retained_intron ENSMUSG00000002949 Timm44 ENSMUST00000141195 - NO_TRANSLATION retained_intron ENSMUSG00000002949 Timm44 ENSMUST00000003029 ENSMUSP00000003029 TRANSLATION protein_coding - CCDS22083.1 1 452.0 0.0 5.5 9.5 144.7 0.0 -4,0 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000051495 Irf2bp2 ENSMUST00000054960 ENSMUSP00000062753 TRANSLATION protein_coding - CCDS52711.1 2 570.0 8.0 0.6 0.0 118.0 0.0 -4,-2 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000031722 Hp ENSMUST00000212018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031722 Hp ENSMUST00000212918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031722 Hp ENSMUST00000074898 ENSMUSP00000074436 TRANSLATION protein_coding - CCDS40470.1 1 347.0 0.0 2.75 7.7 175.0 0.0 4,-1 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000006362 Cbfa2t3 ENSMUST00000147374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006362 Cbfa2t3 ENSMUST00000006525 ENSMUSP00000006525 TRANSLATION protein_coding - CCDS52696.1 2 559.0 8.0 6.78 0.0 266.4 0.0 -4,-5 0.1522 1 14.0 ALTERNATIVE:2 ENSMUSG00000006362 Cbfa2t3 ENSMUST00000142535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006362 Cbfa2t3 ENSMUST00000134045 ENSMUSP00000117630 TRANSLATION protein_coding stop - 5 185.0 0.0 2.13 0.0 101.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000006362 Cbfa2t3 ENSMUST00000127984 ENSMUSP00000118997 TRANSLATION protein_coding - CCDS22744.1 1 620.0 8.0 6.78 1.8 266.4 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:2 ENSMUSG00000006362 Cbfa2t3 ENSMUST00000148630 - NO_TRANSLATION retained_intron ENSMUSG00000006362 Cbfa2t3 ENSMUST00000064674 ENSMUSP00000065728 TRANSLATION protein_coding - CCDS52697.1 1 585.0 8.0 6.78 1.8 266.4 0.0 -4,-7 0.6823 1 15.0 ALTERNATIVE:2 ENSMUSG00000004630 Pcp2 ENSMUST00000004749 ENSMUSP00000004749 TRANSLATION protein_coding - CCDS22066.1 1 99.0 0.0 0.16 2.1 35.1 0.0 -4,-5 0.0782 2 5.744 MINOR ENSMUSG00000004630 Pcp2 ENSMUST00000142431 ENSMUSP00000121403 TRANSLATION protein_coding - CCDS22066.1 2 99.0 0.0 0.16 2.1 35.1 0.0 -4,-5 0.0782 2 5.744 MINOR ENSMUSG00000004630 Pcp2 ENSMUST00000145855 - NO_TRANSLATION retained_intron ENSMUSG00000004630 Pcp2 ENSMUST00000136105 ENSMUSP00000121079 TRANSLATION protein_coding - CCDS52471.1 1 136.0 0.0 0.385 3.3 73.8 0.0 -4,-5 0.5921 2 12.822 MINOR ENSMUSG00000004630 Pcp2 ENSMUST00000133459 ENSMUSP00000122902 TRANSLATION protein_coding - CCDS52470.1 1 120.0 0.0 0.385 6.6 73.8 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000004630 Pcp2 ENSMUST00000128566 ENSMUSP00000146683 TRANSLATION protein_coding - - 2 114.0 0.0 0.385 0.0 73.8 0.0 -4,-5 0.0405 1 12.0 MINOR ENSMUSG00000004630 Pcp2 ENSMUST00000144977 ENSMUSP00000146399 TRANSLATION protein_coding - - 3 104.0 0.0 0.385 0.0 73.8 0.0 -4,-5 0.0324 1 12.0 MINOR ENSMUSG00000033938 Ndufb7 ENSMUST00000127162 - NO_TRANSLATION retained_intron ENSMUSG00000033938 Ndufb7 ENSMUST00000036996 ENSMUSP00000037341 TRANSLATION protein_coding - CCDS22455.1 1 137.0 0.0 3.0 8.3 99.2 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000031818 Cox4i1 ENSMUST00000181795 ENSMUSP00000138063 TRANSLATION protein_coding stop - 3 92.0 0.0 2.5 0.0 127.2 1.0 -4,-6 0.0014 5 -2.0 MINOR ENSMUSG00000031818 Cox4i1 ENSMUST00000181586 ENSMUSP00000138019 TRANSLATION protein_coding - CCDS40498.1 1 169.0 0.0 4.0 36.9 199.1 1.0 -3,1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000031818 Cox4i1 ENSMUST00000181847 ENSMUSP00000138053 TRANSLATION nonsense_mediated_decay - - 5 65.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000031818 Cox4i1 ENSMUST00000034276 ENSMUSP00000034276 TRANSLATION protein_coding - CCDS40498.1 1 169.0 0.0 4.0 36.9 199.1 1.0 -3,1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000031818 Cox4i1 ENSMUST00000181172 - NO_TRANSLATION retained_intron ENSMUSG00000031818 Cox4i1 ENSMUST00000180856 - NO_TRANSLATION retained_intron ENSMUSG00000031818 Cox4i1 ENSMUST00000181026 - NO_TRANSLATION retained_intron ENSMUSG00000062687 Cks1brt ENSMUST00000211617 ENSMUSP00000147685 TRANSLATION protein_coding - CCDS52622.1 1 96.0 0.0 1.0 0.0 117.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062687 Cks1brt ENSMUST00000076896 ENSMUSP00000076162 TRANSLATION protein_coding - CCDS52622.1 - 96.0 0.0 1.0 0.0 117.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038257 Glra3 ENSMUST00000164020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038257 Glra3 ENSMUST00000239388 ENSMUSP00000159349 TRANSLATION protein_coding - CCDS40340.1 - 480.0 0.0 6.3 0.1 298.0 3.0 -3,-1 0.4201 1 12.0 MINOR ENSMUSG00000038257 Glra3 ENSMUST00000000275 ENSMUSP00000000275 TRANSLATION protein_coding - - 1 464.0 0.0 6.3 8.9 298.0 3.0 0,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000074127 Cmtm2a ENSMUST00000212487 ENSMUSP00000148812 TRANSLATION non_stop_decay stop - 1 168.0 0.0 1.0 0.0 0.0 2.0 -4,-7 0.2052 - -2.0 MINOR ENSMUSG00000074127 Cmtm2a ENSMUST00000034344 ENSMUSP00000034344 TRANSLATION protein_coding - CCDS40451.1 1 169.0 0.0 2.75 0.1 0.0 4.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074127 Cmtm2a ENSMUST00000212492 ENSMUSP00000148378 TRANSLATION protein_coding - - 3 166.0 0.0 2.0 0.0 0.0 2.0 -4,-7 0.1126 - 4.362 MINOR ENSMUSG00000025044 Msr1 ENSMUST00000210589 - NO_TRANSLATION retained_intron ENSMUSG00000025044 Msr1 ENSMUST00000210525 ENSMUSP00000147644 TRANSLATION protein_coding stop - 5 213.0 0.0 0.0 0.0 0.0 1.0 -4,-6 0.0036 1 -2.0 MINOR ENSMUSG00000025044 Msr1 ENSMUST00000170091 ENSMUSP00000132535 TRANSLATION protein_coding - CCDS52543.1 1 354.0 0.0 0.0 0.0 122.9 1.0 -4,-6 0.0466 1 0.0 MINOR ENSMUSG00000025044 Msr1 ENSMUST00000026021 ENSMUSP00000026021 TRANSLATION protein_coding - CCDS52542.1 5 458.0 0.0 2.0 0.0 226.7 1.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000025044 Msr1 ENSMUST00000210681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031609 Sap30 ENSMUST00000034022 ENSMUSP00000034022 TRANSLATION protein_coding - CCDS22316.1 1 220.0 4.0 3.8 8.0 202.9 0.0 -3,-6 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000091490 Triml2 ENSMUST00000209200 ENSMUSP00000147371 TRANSLATION protein_coding - CCDS52546.1 1 424.0 7.0 3.41 0.9 89.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000091490 Triml2 ENSMUST00000163869 ENSMUSP00000132971 TRANSLATION protein_coding - CCDS52546.1 5 424.0 7.0 3.41 0.9 89.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000091490 Triml2 ENSMUST00000209872 ENSMUSP00000148027 TRANSLATION protein_coding - - 1 377.0 7.0 2.91 0.0 89.7 0.0 -4,-5 0.0148 - 12.998 ALTERNATIVE:2 ENSMUSG00000091490 Triml2 ENSMUST00000211228 - NO_TRANSLATION retained_intron ENSMUSG00000091490 Triml2 ENSMUST00000210136 ENSMUSP00000148196 TRANSLATION protein_coding - CCDS52546.1 1 424.0 7.0 3.41 0.9 89.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000003039 Fam32a ENSMUST00000003123 ENSMUSP00000003123 TRANSLATION protein_coding - CCDS52595.1 1 112.0 0.0 1.75 25.9 32.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000003039 Fam32a ENSMUST00000212117 - NO_TRANSLATION retained_intron ENSMUSG00000036330 Slc18a1 ENSMUST00000142548 - NO_TRANSLATION retained_intron ENSMUSG00000036330 Slc18a1 ENSMUST00000148856 ENSMUSP00000148432 TRANSLATION protein_coding stop - 3 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036330 Slc18a1 ENSMUST00000037478 ENSMUSP00000046924 TRANSLATION protein_coding - CCDS22344.1 1 521.0 0.0 3.31 9.0 112.1 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036330 Slc18a1 ENSMUST00000142710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036330 Slc18a1 ENSMUST00000147674 - NO_TRANSLATION retained_intron ENSMUSG00000037234 Hook3 ENSMUST00000211292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037234 Hook3 ENSMUST00000210172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037234 Hook3 ENSMUST00000209996 - NO_TRANSLATION retained_intron ENSMUSG00000037234 Hook3 ENSMUST00000209542 - NO_TRANSLATION retained_intron ENSMUSG00000037234 Hook3 ENSMUST00000211777 - NO_TRANSLATION retained_intron ENSMUSG00000037234 Hook3 ENSMUST00000037182 ENSMUSP00000046788 TRANSLATION protein_coding - CCDS22206.1 1 718.0 0.0 4.625 27.1 1052.8 0.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000037234 Hook3 ENSMUST00000211683 ENSMUSP00000147595 TRANSLATION protein_coding start - 3 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037234 Hook3 ENSMUST00000210860 - NO_TRANSLATION retained_intron ENSMUSG00000037234 Hook3 ENSMUST00000152144 - NO_TRANSLATION retained_intron ENSMUSG00000037234 Hook3 ENSMUST00000147613 ENSMUSP00000115008 TRANSLATION protein_coding start/stop - 3 233.0 0.0 0.0 0.0 255.1 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000037260 Hgsnat ENSMUST00000210894 - NO_TRANSLATION retained_intron ENSMUSG00000037260 Hgsnat ENSMUST00000209420 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037260 Hgsnat ENSMUST00000037609 ENSMUSP00000040356 TRANSLATION protein_coding - - 1 624.0 0.0 1.6 0.0 0.0 0.0 0,-3 0.7689 3 6.0 PRINCIPAL:1 ENSMUSG00000037260 Hgsnat ENSMUST00000211550 ENSMUSP00000147675 TRANSLATION protein_coding stop - 5 119.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0286 - -2.0 MINOR ENSMUSG00000031617 Tmem184c ENSMUST00000034030 ENSMUSP00000034030 TRANSLATION protein_coding - CCDS22426.1 1 622.0 0.0 0.0 0.0 337.8 5.0 0,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000031617 Tmem184c ENSMUST00000141202 ENSMUSP00000120041 TRANSLATION protein_coding stop - 5 100.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031617 Tmem184c ENSMUST00000152168 ENSMUSP00000114463 TRANSLATION protein_coding stop - 5 228.0 0.0 0.0 0.0 167.6 3.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031924 Cyb5b ENSMUST00000212920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031924 Cyb5b ENSMUST00000034400 ENSMUSP00000034400 TRANSLATION protein_coding - CCDS22647.1 1 146.0 20.0 2.528 10.1 90.9 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000061825 Ces2c ENSMUST00000162970 - NO_TRANSLATION retained_intron ENSMUSG00000061825 Ces2c ENSMUST00000055052 ENSMUSP00000058567 TRANSLATION protein_coding - CCDS22587.1 1 561.0 6.0 10.5 2.8 562.1 0.0 3,-1 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000046718 Bst2 ENSMUST00000212386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046718 Bst2 ENSMUST00000051672 ENSMUSP00000051921 TRANSLATION protein_coding - CCDS22397.1 1 172.0 0.0 2.85 0.1 116.0 0.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000031913 Vps4a ENSMUST00000144527 - NO_TRANSLATION retained_intron ENSMUSG00000031913 Vps4a ENSMUST00000034388 ENSMUSP00000034388 TRANSLATION protein_coding - CCDS40463.1 1 437.0 10.0 9.455 33.4 319.7 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000031913 Vps4a ENSMUST00000132096 - NO_TRANSLATION retained_intron ENSMUSG00000034105 Meak7 ENSMUST00000212501 - NO_TRANSLATION retained_intron ENSMUSG00000034105 Meak7 ENSMUST00000212534 ENSMUSP00000148691 TRANSLATION protein_coding stop - 3 94.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034105 Meak7 ENSMUST00000049156 ENSMUSP00000044430 TRANSLATION protein_coding - CCDS40494.1 1 455.0 0.0 1.88 5.5 125.8 0.0 -4,-6 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000033658 Ddx19b ENSMUST00000040241 ENSMUSP00000038551 TRANSLATION protein_coding - CCDS22669.1 1 479.0 14.0 8.5 18.0 191.1 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000033658 Ddx19b ENSMUST00000065784 ENSMUSP00000066806 TRANSLATION protein_coding - CCDS57645.1 1 494.0 14.0 8.5 0.4 191.1 0.0 -4,-1 0.2528 4 18.0 MINOR ENSMUSG00000056973 Ces1d ENSMUST00000034172 ENSMUSP00000034172 TRANSLATION protein_coding - CCDS22528.1 1 565.0 7.0 12.0 8.2 544.8 0.0 4,-1 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000056973 Ces1d ENSMUST00000129987 - NO_TRANSLATION retained_intron ENSMUSG00000056973 Ces1d ENSMUST00000148340 - NO_TRANSLATION retained_intron ENSMUSG00000056973 Ces1d ENSMUST00000143256 - NO_TRANSLATION retained_intron ENSMUSG00000054400 Cklf ENSMUST00000211829 ENSMUSP00000148371 TRANSLATION nonsense_mediated_decay start - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0338 - -2.0 MINOR ENSMUSG00000054400 Cklf ENSMUST00000212259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054400 Cklf ENSMUST00000212939 ENSMUSP00000148804 TRANSLATION protein_coding - - 3 84.0 0.0 1.0 0.0 0.0 5.0 -4,-5 0.0362 - 2.328 MINOR ENSMUSG00000054400 Cklf ENSMUST00000034342 ENSMUSP00000034342 TRANSLATION protein_coding - CCDS40450.1 1 152.0 0.0 2.58 0.1 0.0 8.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054400 Cklf ENSMUST00000212433 ENSMUSP00000148362 TRANSLATION protein_coding - - 1 86.0 0.0 1.0 0.0 0.0 5.0 -4,-5 0.0362 - 2.328 MINOR ENSMUSG00000054400 Cklf ENSMUST00000212688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054400 Cklf ENSMUST00000098464 ENSMUSP00000096064 TRANSLATION protein_coding - CCDS40449.1 1 96.0 0.0 1.0 0.0 0.0 5.0 -4,-5 0.1866 - 2.328 MINOR ENSMUSG00000054400 Cklf ENSMUST00000212410 ENSMUSP00000148816 TRANSLATION nonsense_mediated_decay - - 1 122.0 0.0 2.08 0.0 0.0 7.0 -4,-5 0.0332 - -2.0 MINOR ENSMUSG00000054400 Cklf ENSMUST00000212422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054400 Cklf ENSMUST00000211809 ENSMUSP00000148697 TRANSLATION protein_coding - CCDS85592.1 1 120.0 0.0 1.5 0.0 0.0 6.0 -4,-5 0.1822 - 3.486 MINOR ENSMUSG00000055148 Klf2 ENSMUST00000067912 ENSMUSP00000064823 TRANSLATION protein_coding - CCDS22412.1 1 354.0 12.0 1.0 5.7 68.6 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000061958 Defa38 ENSMUST00000077452 ENSMUSP00000076665 TRANSLATION protein_coding - CCDS52503.1 1 116.0 0.0 0.0 0.0 77.7 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000049577 Zfpm1 ENSMUST00000054052 ENSMUSP00000058037 TRANSLATION protein_coding - CCDS22733.1 1 995.0 13.0 4.8 0.1 35.4 0.0 -4,-7 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000049577 Zfpm1 ENSMUST00000176690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049577 Zfpm1 ENSMUST00000176883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049577 Zfpm1 ENSMUST00000177356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049577 Zfpm1 ENSMUST00000212315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031626 Sorbs2 ENSMUST00000067107 ENSMUSP00000067641 TRANSLATION protein_coding - CCDS57619.1 1 1196.0 0.0 5.146 2.0 244.7 0.0 -4,-2 0.8388 36 8.417 ALTERNATIVE:2 ENSMUSG00000031626 Sorbs2 ENSMUST00000139869 ENSMUSP00000121235 TRANSLATION protein_coding - - 1 623.0 0.0 5.146 0.0 236.4 0.0 -4,-5 0.0389 27 8.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000132139 ENSMUSP00000123250 TRANSLATION protein_coding - CCDS80872.1 5 707.0 0.0 4.766 1.1 229.7 0.0 -4,-2 0.143 27 6.88 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000136344 - NO_TRANSLATION retained_intron ENSMUSG00000031626 Sorbs2 ENSMUST00000134321 ENSMUSP00000115842 TRANSLATION protein_coding stop - 3 50.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000155858 ENSMUSP00000122820 TRANSLATION protein_coding start/stop - 3 231.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 8 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000238803 ENSMUSP00000159073 TRANSLATION protein_coding start - - 390.0 0.0 2.116 0.0 58.8 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000133864 - NO_TRANSLATION retained_intron ENSMUSG00000031626 Sorbs2 ENSMUST00000130011 ENSMUSP00000121619 TRANSLATION protein_coding - CCDS80874.1 1 652.0 0.0 5.096 0.0 236.4 0.0 -4,-7 0.1781 24 7.898 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000124544 ENSMUSP00000147462 TRANSLATION protein_coding - - 1 274.0 0.0 0.0 0.0 93.6 0.0 -4,-7 0.0005 6 0.2 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000138049 ENSMUSP00000123503 TRANSLATION protein_coding stop - 1 532.0 0.0 0.0 0.0 85.3 0.0 -4,-2 0.0027 19 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000135336 ENSMUSP00000114286 TRANSLATION protein_coding - CCDS57619.1 5 1196.0 0.0 5.146 2.0 244.7 0.0 -4,-2 0.8388 36 8.417 ALTERNATIVE:2 ENSMUSG00000031626 Sorbs2 ENSMUST00000211442 - NO_TRANSLATION retained_intron ENSMUSG00000031626 Sorbs2 ENSMUST00000211095 ENSMUSP00000148072 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000156549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031626 Sorbs2 ENSMUST00000143820 ENSMUSP00000119539 TRANSLATION protein_coding stop - 3 212.0 0.0 0.0 0.0 93.6 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000210946 ENSMUSP00000147573 TRANSLATION protein_coding stop - 3 54.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000209534 - NO_TRANSLATION retained_intron ENSMUSG00000031626 Sorbs2 ENSMUST00000149752 ENSMUSP00000121073 TRANSLATION protein_coding stop - 3 75.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000130850 ENSMUSP00000123195 TRANSLATION protein_coding stop - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000136119 - NO_TRANSLATION retained_intron ENSMUSG00000031626 Sorbs2 ENSMUST00000171337 ENSMUSP00000128000 TRANSLATION protein_coding - CCDS57618.1 1 1214.0 0.0 5.096 3.4 244.7 0.0 -4,-2 1.0 36 8.898 PRINCIPAL:4 ENSMUSG00000031626 Sorbs2 ENSMUST00000211721 - NO_TRANSLATION retained_intron ENSMUSG00000031626 Sorbs2 ENSMUST00000126067 ENSMUSP00000118562 TRANSLATION protein_coding stop - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000067065 ENSMUSP00000070720 TRANSLATION protein_coding - - 5 1079.0 0.0 5.096 0.0 151.1 0.0 -4,-6 0.0619 31 7.298 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000132730 - NO_TRANSLATION retained_intron ENSMUSG00000031626 Sorbs2 ENSMUST00000153798 ENSMUSP00000118353 TRANSLATION protein_coding - - 1 584.0 0.0 3.516 0.0 195.8 0.0 -4,-5 0.0008 25 4.142 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000146627 ENSMUSP00000120487 TRANSLATION protein_coding start/stop - 3 199.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 7 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000139103 ENSMUSP00000119380 TRANSLATION protein_coding stop - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000127395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031626 Sorbs2 ENSMUST00000140088 ENSMUSP00000114158 TRANSLATION protein_coding start/stop - 3 186.0 0.0 0.0 0.0 34.3 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000125295 ENSMUSP00000116768 TRANSLATION protein_coding start - 1 1134.0 0.0 5.096 0.0 244.7 0.0 -4,-5 0.1878 32 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000132767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031626 Sorbs2 ENSMUST00000145458 ENSMUSP00000116536 TRANSLATION protein_coding stop - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000150102 ENSMUSP00000114951 TRANSLATION protein_coding stop - 2 91.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000134675 ENSMUSP00000118160 TRANSLATION protein_coding - - 1 308.0 0.0 0.0 0.0 93.6 0.0 -4,-2 0.0014 8 0.2 MINOR ENSMUSG00000031626 Sorbs2 ENSMUST00000141039 ENSMUSP00000117544 TRANSLATION protein_coding - - 5 308.0 0.0 0.0 0.0 93.6 0.0 -4,-2 0.0014 8 0.2 MINOR ENSMUSG00000001910 Nacc1 ENSMUST00000238301 ENSMUSP00000158781 TRANSLATION protein_coding stop - - 223.0 0.0 2.1 0.0 88.9 0.0 -4,-5 0.0016 4 -2.0 MINOR ENSMUSG00000001910 Nacc1 ENSMUST00000238434 ENSMUSP00000158606 TRANSLATION protein_coding start/stop - - 372.0 0.0 4.6 0.0 36.6 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000001910 Nacc1 ENSMUST00000238449 ENSMUSP00000158624 TRANSLATION protein_coding stop - - 187.0 0.0 2.1 0.0 88.9 0.0 -4,-5 0.0016 3 -2.0 MINOR ENSMUSG00000001910 Nacc1 ENSMUST00000001975 ENSMUSP00000001975 TRANSLATION protein_coding - CCDS22475.1 1 514.0 0.0 6.1 1.1 125.5 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000001910 Nacc1 ENSMUST00000238687 ENSMUSP00000158582 TRANSLATION protein_coding stop - - 64.0 0.0 1.0 0.0 55.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000063412 Erhrt-ps ENSMUST00000080152 ENSMUSP00000147411 TRANSLATION protein_coding - - - 104.0 0.0 1.0 33.1 154.3 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039509 Nup133 ENSMUST00000213089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039509 Nup133 ENSMUST00000212133 - NO_TRANSLATION retained_intron ENSMUSG00000039509 Nup133 ENSMUST00000044795 ENSMUSP00000048084 TRANSLATION protein_coding - CCDS22765.1 1 1155.0 0.0 11.125 13.8 82.9 0.0 -4,-2 1.0 28 16.0 PRINCIPAL:1 ENSMUSG00000053626 Tll1 ENSMUST00000210256 ENSMUSP00000147695 TRANSLATION protein_coding stop - 1 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0212 - -2.0 MINOR ENSMUSG00000053626 Tll1 ENSMUST00000211755 - NO_TRANSLATION retained_intron ENSMUSG00000053626 Tll1 ENSMUST00000066166 ENSMUSP00000070560 TRANSLATION protein_coding - CCDS40352.1 1 1013.0 33.0 17.8 8.9 906.5 0.0 1,-3 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000053626 Tll1 ENSMUST00000209451 - NO_TRANSLATION retained_intron ENSMUSG00000031666 Rbl2 ENSMUST00000130336 - NO_TRANSLATION retained_intron ENSMUSG00000031666 Rbl2 ENSMUST00000210533 - NO_TRANSLATION retained_intron ENSMUSG00000031666 Rbl2 ENSMUST00000209518 ENSMUSP00000147327 TRANSLATION protein_coding - CCDS85580.1 1 1125.0 0.0 4.8885 0.0 568.3 0.0 -4,-5 0.2353 21 9.474 MINOR ENSMUSG00000031666 Rbl2 ENSMUST00000147361 - NO_TRANSLATION retained_intron ENSMUSG00000031666 Rbl2 ENSMUST00000141351 - NO_TRANSLATION retained_intron ENSMUSG00000031666 Rbl2 ENSMUST00000145246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031666 Rbl2 ENSMUST00000034091 ENSMUSP00000034091 TRANSLATION protein_coding - CCDS22518.1 1 1135.0 0.0 5.0865 0.4 589.0 0.0 -4,-5 1.0 22 11.118 PRINCIPAL:1 ENSMUSG00000031666 Rbl2 ENSMUST00000211136 ENSMUSP00000147579 TRANSLATION protein_coding - CCDS85581.1 1 1092.0 0.0 5.529 0.0 547.2 0.0 -4,-5 0.3832 22 9.492 MINOR ENSMUSG00000031666 Rbl2 ENSMUST00000144190 - NO_TRANSLATION retained_intron ENSMUSG00000031666 Rbl2 ENSMUST00000126689 - NO_TRANSLATION retained_intron ENSMUSG00000040396 Abhd13 ENSMUST00000048216 ENSMUSP00000036730 TRANSLATION protein_coding - CCDS40217.1 1 337.0 6.0 1.0 29.1 37.3 1.0 -1,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000040396 Abhd13 ENSMUST00000139793 ENSMUSP00000116130 TRANSLATION protein_coding - CCDS40217.1 2 337.0 6.0 1.0 29.1 37.3 1.0 -1,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000090206 Tepp ENSMUST00000135142 ENSMUSP00000118840 TRANSLATION protein_coding stop - 3 174.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0124 - -2.0 MINOR ENSMUSG00000090206 Tepp ENSMUST00000162294 ENSMUSP00000124913 TRANSLATION protein_coding start - 2 73.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0111 1 -2.0 MINOR ENSMUSG00000090206 Tepp ENSMUST00000153991 ENSMUSP00000148558 TRANSLATION protein_coding start - 3 82.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0229 1 -2.0 MINOR ENSMUSG00000090206 Tepp ENSMUST00000098480 ENSMUSP00000096080 TRANSLATION protein_coding - CCDS22558.1 1 104.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0941 2 0.0 MINOR ENSMUSG00000090206 Tepp ENSMUST00000161029 ENSMUSP00000125362 TRANSLATION protein_coding - CCDS22557.1 1 216.0 0.0 0.0 10.3 0.0 0.0 -4,-5 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000090206 Tepp ENSMUST00000212056 ENSMUSP00000148526 TRANSLATION protein_coding - - 5 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0092 2 0.0 MINOR ENSMUSG00000090206 Tepp ENSMUST00000162555 ENSMUSP00000125481 TRANSLATION protein_coding stop - 3 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0079 - -2.0 MINOR ENSMUSG00000109523 Gdf1 ENSMUST00000207684 ENSMUSP00000146749 TRANSLATION protein_coding - CCDS52571.1 1 357.0 0.0 0.4 0.1 100.0 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036356 Csgalnact1 ENSMUST00000136060 ENSMUSP00000116134 TRANSLATION protein_coding stop - 1 300.0 0.0 0.165 0.0 58.2 1.0 -1,-5 0.0026 3 -2.0 MINOR ENSMUSG00000036356 Csgalnact1 ENSMUST00000130214 ENSMUSP00000119817 TRANSLATION protein_coding - CCDS22341.1 1 530.0 3.0 1.4025 4.9 279.5 1.0 -1,-5 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000036356 Csgalnact1 ENSMUST00000125727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036356 Csgalnact1 ENSMUST00000211871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036356 Csgalnact1 ENSMUST00000139141 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036356 Csgalnact1 ENSMUST00000150083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036356 Csgalnact1 ENSMUST00000143586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036356 Csgalnact1 ENSMUST00000078350 ENSMUSP00000077459 TRANSLATION protein_coding - CCDS22341.1 1 530.0 3.0 1.4025 4.9 279.5 1.0 -1,-5 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000031758 Cdyl2 ENSMUST00000109102 ENSMUSP00000104730 TRANSLATION protein_coding - CCDS40488.1 1 503.0 15.0 5.43 14.1 168.5 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000057788 Ddx49 ENSMUST00000127076 - NO_TRANSLATION retained_intron ENSMUSG00000057788 Ddx49 ENSMUST00000138688 - NO_TRANSLATION retained_intron ENSMUSG00000057788 Ddx49 ENSMUST00000144890 - NO_TRANSLATION retained_intron ENSMUSG00000057788 Ddx49 ENSMUST00000008004 ENSMUSP00000008004 TRANSLATION protein_coding - CCDS22364.1 1 480.0 14.0 8.125 2.0 256.1 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000057788 Ddx49 ENSMUST00000127094 - NO_TRANSLATION retained_intron ENSMUSG00000046556 Zfp319 ENSMUST00000057717 ENSMUSP00000053397 TRANSLATION protein_coding - CCDS22559.1 1 581.0 56.0 0.5 8.7 222.7 0.0 -4,-6 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000034390 Cmip ENSMUST00000211913 - NO_TRANSLATION retained_intron ENSMUSG00000034390 Cmip ENSMUST00000166750 ENSMUSP00000130264 TRANSLATION protein_coding - CCDS52680.1 5 773.0 0.0 0.0 14.6 0.0 0.0 -4,-5 1.0 11 4.0 PRINCIPAL:1 ENSMUSG00000034390 Cmip ENSMUST00000095172 ENSMUSP00000092795 TRANSLATION protein_coding - CCDS52681.1 1 685.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1424 9 0.0 MINOR ENSMUSG00000034390 Cmip ENSMUST00000212884 - NO_TRANSLATION retained_intron ENSMUSG00000031728 Zfp821 ENSMUST00000212000 ENSMUSP00000148348 TRANSLATION protein_coding - CCDS40473.1 1 413.0 7.0 2.898 12.4 0.0 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000031728 Zfp821 ENSMUST00000211918 - NO_TRANSLATION retained_intron ENSMUSG00000031728 Zfp821 ENSMUST00000212233 - NO_TRANSLATION retained_intron ENSMUSG00000031728 Zfp821 ENSMUST00000212192 ENSMUSP00000148292 TRANSLATION protein_coding stop - 1 404.0 7.0 2.898 0.0 0.0 0.0 -4,-7 0.0784 1 -2.0 MINOR ENSMUSG00000031728 Zfp821 ENSMUST00000034163 ENSMUSP00000034163 TRANSLATION protein_coding - CCDS40473.1 1 413.0 7.0 2.898 12.4 0.0 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000031728 Zfp821 ENSMUST00000212964 ENSMUSP00000148334 TRANSLATION protein_coding - CCDS85609.1 1 262.0 6.0 1.8 6.9 0.0 0.0 -4,-1 0.4534 2 10.422 MINOR ENSMUSG00000031861 Lpar2 ENSMUST00000034325 ENSMUSP00000034325 TRANSLATION protein_coding - CCDS40362.1 1 348.0 0.0 1.2 11.0 111.6 7.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000031861 Lpar2 ENSMUST00000164890 ENSMUSP00000128261 TRANSLATION protein_coding - CCDS40362.1 1 348.0 0.0 1.2 11.0 111.6 7.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000031861 Lpar2 ENSMUST00000238452 ENSMUSP00000158853 TRANSLATION protein_coding - - - 249.0 0.0 0.8 2.0 81.5 6.0 -4,-7 0.0566 - 8.496 MINOR ENSMUSG00000110591 Potefam3f ENSMUST00000211848 ENSMUSP00000148655 TRANSLATION protein_coding start - 5 265.0 0.0 3.4795 0.0 89.1 0.0 -4,-5 0.7385 - -2.0 PRINCIPAL:1 ENSMUSG00000031879 Ciao2b ENSMUST00000164884 ENSMUSP00000132725 TRANSLATION protein_coding - CCDS52649.1 1 163.0 0.0 4.13 8.1 59.7 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000031879 Ciao2b ENSMUST00000093234 ENSMUSP00000090921 TRANSLATION protein_coding - - 5 136.0 0.0 1.55 0.0 24.5 0.0 -4,-5 0.0 1 3.3 MINOR ENSMUSG00000031879 Ciao2b ENSMUST00000163140 ENSMUSP00000148786 TRANSLATION nonsense_mediated_decay - - 2 91.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031645 F11 ENSMUST00000210622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031645 F11 ENSMUST00000034064 ENSMUSP00000034064 TRANSLATION protein_coding - CCDS22274.1 1 624.0 5.0 12.6 10.7 386.9 0.0 2,-3 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000031729 Ist1 ENSMUST00000212562 - NO_TRANSLATION retained_intron ENSMUSG00000031729 Ist1 ENSMUST00000034164 ENSMUSP00000034164 TRANSLATION protein_coding - CCDS22655.1 1 362.0 0.0 4.5 16.5 208.3 0.0 -4,-1 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000031729 Ist1 ENSMUST00000212170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031729 Ist1 ENSMUST00000212973 - NO_TRANSLATION retained_intron ENSMUSG00000003037 Rab8a ENSMUST00000003121 ENSMUSP00000003121 TRANSLATION protein_coding - CCDS22409.1 1 207.0 21.0 5.7 36.9 223.6 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000003037 Rab8a ENSMUST00000128203 - NO_TRANSLATION retained_intron ENSMUSG00000003037 Rab8a ENSMUST00000135613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036810 Cnep1r1 ENSMUST00000128290 - NO_TRANSLATION retained_intron ENSMUSG00000036810 Cnep1r1 ENSMUST00000095214 ENSMUSP00000092839 TRANSLATION protein_coding - CCDS52628.1 1 125.0 0.0 4.08 29.9 195.1 3.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000036810 Cnep1r1 ENSMUST00000121097 ENSMUSP00000113435 TRANSLATION protein_coding - - 1 106.0 0.0 3.08 0.0 134.5 3.0 -4,-7 0.0022 - 6.366 MINOR ENSMUSG00000036810 Cnep1r1 ENSMUST00000117775 ENSMUSP00000113207 TRANSLATION protein_coding - - 3 113.0 0.0 3.58 0.0 174.5 3.0 -4,-7 0.0138 1 9.762 MINOR ENSMUSG00000036810 Cnep1r1 ENSMUST00000131891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036810 Cnep1r1 ENSMUST00000127490 ENSMUSP00000120121 TRANSLATION nonsense_mediated_decay - - 2 47.0 0.0 1.08 0.0 47.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056426 Nat3 ENSMUST00000070514 ENSMUSP00000069359 TRANSLATION protein_coding - CCDS22339.1 1 290.0 0.0 1.0 15.4 295.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031790 Mmp15 ENSMUST00000034243 ENSMUSP00000034243 TRANSLATION protein_coding - CCDS22561.1 1 657.0 21.0 6.1 0.4 524.6 0.0 -2,-4 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000031790 Mmp15 ENSMUST00000212235 - NO_TRANSLATION retained_intron ENSMUSG00000110444 Gm10033 ENSMUST00000239492 ENSMUSP00000159343 TRANSLATION protein_coding start - - 128.0 0.0 0.64 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000110444 Gm10033 ENSMUST00000239456 ENSMUSP00000159337 TRANSLATION protein_coding - - - 858.0 94.0 1.2 0.0 527.0 0.0 -4,-6 0.8743 - 14.0 PRINCIPAL:2 ENSMUSG00000110444 Gm10033 ENSMUST00000072427 ENSMUSP00000159375 TRANSLATION protein_coding - - - 822.0 94.0 1.2 0.0 527.3 0.0 -4,-5 0.2476 - 14.0 ALTERNATIVE:2 ENSMUSG00000110444 Gm10033 ENSMUST00000213012 ENSMUSP00000159301 TRANSLATION protein_coding - - 3 128.0 0.0 0.64 0.0 0.0 0.0 -4,-6 0.0 - 3.198 MINOR ENSMUSG00000110444 Gm10033 ENSMUST00000211954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110444 Gm10033 ENSMUST00000211874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095294 Potefam3b ENSMUST00000178438 ENSMUSP00000137434 TRANSLATION protein_coding - CCDS57608.1 1 350.0 0.0 3.7 0.0 92.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000034829 Nxnl1 ENSMUST00000163659 ENSMUSP00000127094 TRANSLATION protein_coding - CCDS40385.1 2 217.0 0.0 1.8 0.4 79.1 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031778 Cx3cl1 ENSMUST00000211956 ENSMUSP00000148819 TRANSLATION protein_coding - - 2 64.0 0.0 1.15 0.0 0.0 0.0 2,-2 0.0 3 3.63 MINOR ENSMUSG00000031778 Cx3cl1 ENSMUST00000150307 ENSMUSP00000123538 TRANSLATION nonsense_mediated_decay - - 3 57.0 0.0 0.15 0.0 0.0 0.0 2,-2 0.0 - -2.0 MINOR ENSMUSG00000031778 Cx3cl1 ENSMUST00000151783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031778 Cx3cl1 ENSMUST00000211947 ENSMUSP00000148534 TRANSLATION protein_coding - - 5 45.0 0.0 0.15 0.0 0.0 0.0 1,-3 0.0 - 0.474 MINOR ENSMUSG00000031778 Cx3cl1 ENSMUST00000034230 ENSMUSP00000034230 TRANSLATION protein_coding - CCDS22548.1 1 395.0 0.0 1.9 0.1 47.2 0.0 2,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000031778 Cx3cl1 ENSMUST00000135970 ENSMUSP00000117632 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 0.15 0.0 0.0 0.0 4,-1 0.0012 - -2.0 MINOR ENSMUSG00000014470 Rnf166 ENSMUST00000148780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014470 Rnf166 ENSMUST00000136356 - NO_TRANSLATION retained_intron ENSMUSG00000014470 Rnf166 ENSMUST00000014614 ENSMUSP00000014614 TRANSLATION protein_coding - CCDS22740.1 1 237.0 11.0 5.55 17.0 96.1 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000007721 Ccdc124 ENSMUST00000212680 ENSMUSP00000148322 TRANSLATION protein_coding stop - 2 25.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000007721 Ccdc124 ENSMUST00000007865 ENSMUSP00000007865 TRANSLATION protein_coding - CCDS22384.1 1 217.0 0.0 0.0 26.3 111.7 0.0 -4,-7 1.0 9 10.0 PRINCIPAL:1 ENSMUSG00000056313 Tcim ENSMUST00000052622 ENSMUSP00000058631 TRANSLATION protein_coding - CCDS22194.1 - 106.0 0.0 1.0 15.4 124.5 0.0 -4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000058748 Zfp958 ENSMUST00000073201 ENSMUSP00000072937 TRANSLATION protein_coding start - 5 466.0 52.0 1.3 0.1 290.4 0.0 -4,-5 0.4456 - -2.0 MINOR ENSMUSG00000058748 Zfp958 ENSMUST00000202692 ENSMUSP00000143842 TRANSLATION protein_coding - CCDS80856.1 1 467.0 52.0 1.3 0.1 290.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000066880 Zfp617 ENSMUST00000119003 ENSMUSP00000112926 TRANSLATION protein_coding - CCDS52590.1 1 559.0 59.0 1.65 1.1 363.3 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000066880 Zfp617 ENSMUST00000131544 ENSMUSP00000120213 TRANSLATION protein_coding stop - 2 222.0 11.0 0.75 0.0 118.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000011306 Sugp1 ENSMUST00000011450 ENSMUSP00000011450 TRANSLATION protein_coding - CCDS22356.1 1 643.0 0.0 3.4 3.1 155.8 0.0 -4,-6 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000011306 Sugp1 ENSMUST00000213035 - NO_TRANSLATION retained_intron ENSMUSG00000011306 Sugp1 ENSMUST00000211808 - NO_TRANSLATION retained_intron ENSMUSG00000041679 Fbxl9 ENSMUST00000070508 ENSMUSP00000063248 TRANSLATION protein_coding - CCDS57641.1 1 166.0 0.0 2.4 0.0 20.8 0.0 -4,-2 0.0093 1 4.122 MINOR ENSMUSG00000041679 Fbxl9 ENSMUST00000209964 ENSMUSP00000147683 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.32 0.0 35.9 0.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000041679 Fbxl9 ENSMUST00000211199 ENSMUSP00000147791 TRANSLATION nonsense_mediated_decay - - 2 56.0 0.0 0.32 0.0 35.9 0.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000041679 Fbxl9 ENSMUST00000210412 ENSMUSP00000147309 TRANSLATION protein_coding - - 5 621.0 0.0 4.16 2.9 76.0 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000041679 Fbxl9 ENSMUST00000210801 ENSMUSP00000147408 TRANSLATION protein_coding - - 1 56.0 0.0 0.32 0.0 35.9 0.0 -4,-7 0.0012 - 2.832 MINOR ENSMUSG00000031765 Mt1 ENSMUST00000034215 ENSMUSP00000034215 TRANSLATION protein_coding - CCDS40438.1 1 61.0 7.0 1.83 14.5 68.5 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000031765 Mt1 ENSMUST00000211807 ENSMUSP00000148764 TRANSLATION protein_coding - - - 37.0 1.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - 1.938 MINOR ENSMUSG00000031765 Mt1 ENSMUST00000212291 ENSMUSP00000148443 TRANSLATION protein_coding - - 2 132.0 7.0 1.83 0.0 64.5 0.0 -4,-5 0.0476 1 17.652 MINOR ENSMUSG00000040263 Klhdc4 ENSMUST00000174717 ENSMUSP00000134361 TRANSLATION protein_coding - - 5 553.0 0.0 2.02 0.0 94.0 0.0 -4,-5 0.0379 12 10.542 MINOR ENSMUSG00000040263 Klhdc4 ENSMUST00000174709 - NO_TRANSLATION retained_intron ENSMUSG00000040263 Klhdc4 ENSMUST00000172507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040263 Klhdc4 ENSMUST00000045884 ENSMUSP00000043439 TRANSLATION protein_coding - CCDS22729.1 1 584.0 0.0 2.668 0.0 92.5 0.0 -4,-5 0.9874 12 11.904 PRINCIPAL:1 ENSMUSG00000040263 Klhdc4 ENSMUST00000174192 ENSMUSP00000134487 TRANSLATION protein_coding - - 5 527.0 0.0 2.168 0.0 56.5 0.0 -4,-5 0.0058 10 8.484 MINOR ENSMUSG00000040263 Klhdc4 ENSMUST00000172954 - NO_TRANSLATION retained_intron ENSMUSG00000040263 Klhdc4 ENSMUST00000174665 ENSMUSP00000134474 TRANSLATION nonsense_mediated_decay - - 5 162.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040263 Klhdc4 ENSMUST00000174206 - NO_TRANSLATION retained_intron ENSMUSG00000040263 Klhdc4 ENSMUST00000174255 ENSMUSP00000134439 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040263 Klhdc4 ENSMUST00000172470 - NO_TRANSLATION retained_intron ENSMUSG00000063362 Alg11 ENSMUST00000134474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063362 Alg11 ENSMUST00000072572 ENSMUSP00000072382 TRANSLATION protein_coding - CCDS57613.1 1 492.0 18.0 5.033 12.9 407.9 1.0 -2,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000063362 Alg11 ENSMUST00000110737 ENSMUSP00000106365 TRANSLATION protein_coding - CCDS40292.1 1 450.0 18.0 4.033 0.0 295.1 1.0 -2,-5 0.008 5 10.002 MINOR ENSMUSG00000063362 Alg11 ENSMUST00000131624 ENSMUSP00000119161 TRANSLATION protein_coding start/stop - 3 160.0 0.0 2.033 0.0 193.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000031983 2310022B05Rik ENSMUST00000034464 ENSMUSP00000034464 TRANSLATION protein_coding - CCDS22773.1 1 322.0 0.0 1.3 0.0 141.4 0.0 -4,-1 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000019478 Rab4a ENSMUST00000212846 ENSMUSP00000148777 TRANSLATION nonsense_mediated_decay start - 3 96.0 8.0 1.95 0.0 73.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019478 Rab4a ENSMUST00000117702 ENSMUSP00000113401 TRANSLATION protein_coding - CCDS52703.1 1 218.0 22.0 6.264 25.5 197.8 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000019478 Rab4a ENSMUST00000118535 ENSMUSP00000113886 TRANSLATION protein_coding - CCDS52703.1 1 218.0 22.0 6.264 25.5 197.8 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000013155 Enkd1 ENSMUST00000212162 - NO_TRANSLATION retained_intron ENSMUSG00000013155 Enkd1 ENSMUST00000013299 ENSMUSP00000013299 TRANSLATION protein_coding - CCDS22610.1 1 346.0 0.0 0.492 9.8 80.8 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000013155 Enkd1 ENSMUST00000212716 - NO_TRANSLATION retained_intron ENSMUSG00000013155 Enkd1 ENSMUST00000212061 ENSMUSP00000148814 TRANSLATION nonsense_mediated_decay - - 1 205.0 0.0 0.16 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038508 Gdf15 ENSMUST00000110103 ENSMUSP00000105730 TRANSLATION protein_coding - CCDS22376.1 1 303.0 0.0 0.6 0.1 75.6 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038508 Gdf15 ENSMUST00000003808 ENSMUSP00000003808 TRANSLATION protein_coding - CCDS22376.1 1 303.0 0.0 0.6 0.1 75.6 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031485 Plpbp ENSMUST00000211756 - NO_TRANSLATION retained_intron ENSMUSG00000031485 Plpbp ENSMUST00000211012 - NO_TRANSLATION retained_intron ENSMUSG00000031485 Plpbp ENSMUST00000211393 ENSMUSP00000147611 TRANSLATION protein_coding start - 1 330.0 11.0 7.21 0.0 63.9 0.0 -4,-2 0.032 12 -2.0 MINOR ENSMUSG00000031485 Plpbp ENSMUST00000033875 ENSMUSP00000033875 TRANSLATION protein_coding - CCDS40310.1 1 274.0 11.0 7.21 13.6 77.0 0.0 -4,-2 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000031485 Plpbp ENSMUST00000098851 ENSMUSP00000096450 TRANSLATION protein_coding - CCDS52533.1 1 141.0 4.0 3.91 0.0 0.0 0.0 -4,-2 0.0043 7 1.332 MINOR ENSMUSG00000031485 Plpbp ENSMUST00000211490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031485 Plpbp ENSMUST00000210225 - NO_TRANSLATION retained_intron ENSMUSG00000031485 Plpbp ENSMUST00000209525 ENSMUSP00000147943 TRANSLATION protein_coding - CCDS85519.1 1 153.0 4.0 4.41 0.7 30.7 0.0 -4,-2 0.0022 8 4.128 MINOR ENSMUSG00000031485 Plpbp ENSMUST00000211518 ENSMUSP00000147632 TRANSLATION protein_coding start - 5 137.0 4.0 4.08 0.0 0.0 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000031485 Plpbp ENSMUST00000210765 ENSMUSP00000148019 TRANSLATION protein_coding start/stop - 5 128.0 3.0 3.41 0.0 40.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000031485 Plpbp ENSMUST00000209856 ENSMUSP00000147304 TRANSLATION protein_coding - - 1 129.0 4.0 3.23 0.0 0.0 0.0 -4,-2 0.0 6 1.332 MINOR ENSMUSG00000031485 Plpbp ENSMUST00000209555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031485 Plpbp ENSMUST00000211281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031485 Plpbp ENSMUST00000210141 ENSMUSP00000147855 TRANSLATION nonsense_mediated_decay start - 3 67.0 4.0 1.74 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000031781 Ciapin1 ENSMUST00000034233 ENSMUSP00000034233 TRANSLATION protein_coding - CCDS22549.1 5 309.0 0.0 4.5 30.3 111.8 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000031781 Ciapin1 ENSMUST00000162357 ENSMUSP00000148350 TRANSLATION protein_coding start - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031781 Ciapin1 ENSMUST00000160245 - NO_TRANSLATION retained_intron ENSMUSG00000031781 Ciapin1 ENSMUST00000160301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031781 Ciapin1 ENSMUST00000160898 - NO_TRANSLATION retained_intron ENSMUSG00000031781 Ciapin1 ENSMUST00000159377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031781 Ciapin1 ENSMUST00000162589 - NO_TRANSLATION retained_intron ENSMUSG00000031781 Ciapin1 ENSMUST00000162538 ENSMUSP00000125451 TRANSLATION protein_coding - CCDS22549.1 1 309.0 0.0 4.5 30.3 111.8 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000031781 Ciapin1 ENSMUST00000161792 ENSMUSP00000125474 TRANSLATION protein_coding start - 5 254.0 0.0 2.75 0.0 89.0 0.0 -4,-5 0.001 6 -2.0 MINOR ENSMUSG00000031781 Ciapin1 ENSMUST00000161762 ENSMUSP00000123794 TRANSLATION nonsense_mediated_decay start - 5 152.0 0.0 2.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000041438 Utp4 ENSMUST00000047629 ENSMUSP00000048377 TRANSLATION protein_coding - CCDS52664.1 1 686.0 0.0 6.432 14.4 25.3 0.0 -4,-1 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000041438 Utp4 ENSMUST00000212272 ENSMUSP00000148429 TRANSLATION protein_coding stop - 2 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0064 - -2.0 MINOR ENSMUSG00000041438 Utp4 ENSMUST00000212718 - NO_TRANSLATION retained_intron ENSMUSG00000009628 Tex15 ENSMUST00000149399 ENSMUSP00000114474 TRANSLATION protein_coding stop - 3 148.0 0.0 1.0 0.0 35.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009628 Tex15 ENSMUST00000124501 ENSMUSP00000138070 TRANSLATION nonsense_mediated_decay - - 1 323.0 0.0 2.36 0.0 157.2 0.0 -4,-5 0.048 - -2.0 MINOR ENSMUSG00000009628 Tex15 ENSMUST00000124496 ENSMUSP00000120744 TRANSLATION protein_coding stop - 5 1279.0 0.0 2.36 0.0 157.2 0.0 -4,-5 0.1015 - -2.0 MINOR ENSMUSG00000009628 Tex15 ENSMUST00000009772 ENSMUSP00000009772 TRANSLATION protein_coding - CCDS22232.1 1 2785.0 0.0 0.0 0.0 406.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000052926 Rnaseh2a ENSMUST00000126029 - NO_TRANSLATION retained_intron ENSMUSG00000052926 Rnaseh2a ENSMUST00000137791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052926 Rnaseh2a ENSMUST00000130902 ENSMUSP00000116164 TRANSLATION protein_coding stop - 3 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0184 - -2.0 MINOR ENSMUSG00000052926 Rnaseh2a ENSMUST00000147812 ENSMUSP00000120374 TRANSLATION protein_coding - CCDS22486.1 5 301.0 3.0 7.25 13.8 0.0 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000052926 Rnaseh2a ENSMUST00000140561 ENSMUSP00000118442 TRANSLATION protein_coding stop - 3 54.0 2.0 1.83 0.0 0.0 0.0 -4,-5 0.0015 1 -2.0 MINOR ENSMUSG00000052926 Rnaseh2a ENSMUST00000122931 - NO_TRANSLATION retained_intron ENSMUSG00000052926 Rnaseh2a ENSMUST00000109738 ENSMUSP00000105360 TRANSLATION protein_coding - CCDS22486.1 1 301.0 3.0 7.25 13.8 0.0 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000052926 Rnaseh2a ENSMUST00000128972 ENSMUSP00000121864 TRANSLATION protein_coding - - 2 258.0 3.0 7.25 0.0 0.0 0.0 -4,-5 0.0591 7 9.0 MINOR ENSMUSG00000052926 Rnaseh2a ENSMUST00000065049 ENSMUSP00000066769 TRANSLATION protein_coding - - 1 254.0 3.0 7.25 0.0 0.0 0.0 -4,-5 0.0252 7 9.0 MINOR ENSMUSG00000052926 Rnaseh2a ENSMUST00000109736 ENSMUSP00000105358 TRANSLATION protein_coding - CCDS22486.1 5 301.0 3.0 7.25 13.8 0.0 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000039470 Zdhhc2 ENSMUST00000164934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039470 Zdhhc2 ENSMUST00000128166 ENSMUSP00000123070 TRANSLATION protein_coding - CCDS22252.1 1 366.0 7.0 8.21 17.3 124.7 3.0 -2,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000039470 Zdhhc2 ENSMUST00000131672 - NO_TRANSLATION retained_intron ENSMUSG00000039470 Zdhhc2 ENSMUST00000168799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039470 Zdhhc2 ENSMUST00000049389 ENSMUSP00000041727 TRANSLATION protein_coding - CCDS22252.1 1 366.0 7.0 8.21 17.3 124.7 3.0 -2,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000064125 Prr36 ENSMUST00000168386 ENSMUSP00000133114 TRANSLATION protein_coding - CCDS52473.1 5 1098.0 0.0 0.0 0.0 83.1 0.0 -4,-6 1.0 14 6.0 PRINCIPAL:1 ENSMUSG00000064125 Prr36 ENSMUST00000176227 ENSMUSP00000135166 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000064125 Prr36 ENSMUST00000175906 ENSMUSP00000135713 TRANSLATION protein_coding stop - 3 155.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000064125 Prr36 ENSMUST00000177491 ENSMUSP00000135130 TRANSLATION protein_coding stop - 3 205.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0011 4 -2.0 MINOR ENSMUSG00000031957 Ctrb1 ENSMUST00000034435 ENSMUSP00000034435 TRANSLATION protein_coding - CCDS22679.1 1 263.0 6.0 5.5 31.1 242.8 0.0 3,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000050097 Ces2b ENSMUST00000163042 ENSMUSP00000124796 TRANSLATION nonsense_mediated_decay - - 1 51.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000050097 Ces2b ENSMUST00000059449 ENSMUSP00000063005 TRANSLATION protein_coding - CCDS22586.1 1 556.0 6.0 10.75 2.5 564.1 0.0 4,-1 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000033703 Fcsk ENSMUST00000041382 ENSMUSP00000039271 TRANSLATION protein_coding - CCDS22666.1 1 1090.0 10.0 3.5975 0.4 387.7 0.0 -4,-6 1.0 22 18.0 PRINCIPAL:1 ENSMUSG00000033703 Fcsk ENSMUST00000212971 ENSMUSP00000148787 TRANSLATION nonsense_mediated_decay - - 1 462.0 0.0 0.3975 0.0 283.9 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000033703 Fcsk ENSMUST00000212568 - NO_TRANSLATION retained_intron ENSMUSG00000033703 Fcsk ENSMUST00000212242 - NO_TRANSLATION retained_intron ENSMUSG00000023336 Wfdc1 ENSMUST00000212901 ENSMUSP00000148437 TRANSLATION protein_coding - - 1 201.0 0.0 1.45 0.0 33.4 0.0 3,-4 0.1062 - 12.0 MINOR ENSMUSG00000023336 Wfdc1 ENSMUST00000024107 ENSMUSP00000024107 TRANSLATION protein_coding - CCDS22711.1 1 211.0 0.0 1.45 5.1 33.4 0.0 3,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000087408 Cers1 ENSMUST00000136257 - NO_TRANSLATION retained_intron ENSMUSG00000087408 Cers1 ENSMUST00000140239 ENSMUSP00000120598 TRANSLATION protein_coding - CCDS52570.1 1 350.0 0.0 6.0 2.5 115.6 0.0 -4,-6 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000087408 Cers1 ENSMUST00000165819 ENSMUSP00000128325 TRANSLATION protein_coding - CCDS52571.1 1 357.0 0.0 0.4 0.1 100.0 0.0 2,-3 0.1417 - 5.064 MINOR ENSMUSG00000043668 Tox3 ENSMUST00000176034 ENSMUSP00000134931 TRANSLATION protein_coding stop - 3 179.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043668 Tox3 ENSMUST00000176616 ENSMUSP00000135697 TRANSLATION protein_coding stop - 5 309.0 0.0 1.63 0.0 50.5 0.0 -4,-5 0.0052 - -2.0 MINOR ENSMUSG00000043668 Tox3 ENSMUST00000109621 ENSMUSP00000105250 TRANSLATION protein_coding - CCDS22516.1 1 575.0 0.0 2.13 0.0 63.9 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000031948 Kars ENSMUST00000034426 ENSMUSP00000034426 TRANSLATION protein_coding - CCDS40481.1 1 595.0 25.0 11.3 12.2 325.0 0.0 -4,-5 1.0 21 17.0 PRINCIPAL:4 ENSMUSG00000031948 Kars ENSMUST00000211990 ENSMUSP00000148790 TRANSLATION protein_coding stop - 3 63.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000031948 Kars ENSMUST00000212693 - NO_TRANSLATION retained_intron ENSMUSG00000031948 Kars ENSMUST00000164470 ENSMUSP00000126268 TRANSLATION protein_coding - CCDS52677.1 1 624.0 25.0 11.3 10.7 325.0 0.0 -4,0 0.9123 21 16.598 ALTERNATIVE:1 ENSMUSG00000031948 Kars ENSMUST00000093120 ENSMUSP00000090808 TRANSLATION protein_coding - CCDS52677.1 1 624.0 25.0 11.3 10.7 325.0 0.0 -4,0 0.9123 21 16.598 ALTERNATIVE:1 ENSMUSG00000031948 Kars ENSMUST00000211978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045969 Ing1 ENSMUST00000210041 ENSMUSP00000147270 TRANSLATION protein_coding - CCDS85499.1 5 185.0 8.0 0.899 3.8 0.0 0.0 -4,-5 0.0601 1 8.65 MINOR ENSMUSG00000045969 Ing1 ENSMUST00000054399 ENSMUSP00000062593 TRANSLATION protein_coding - CCDS22097.1 1 279.0 8.0 2.463 25.4 106.9 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000045969 Ing1 ENSMUST00000209646 ENSMUSP00000148248 TRANSLATION protein_coding stop - 3 161.0 7.0 0.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000045969 Ing1 ENSMUST00000211007 ENSMUSP00000148030 TRANSLATION protein_coding - CCDS85499.1 1 185.0 8.0 0.899 3.8 0.0 0.0 -4,-5 0.0601 1 8.65 MINOR ENSMUSG00000045969 Ing1 ENSMUST00000209565 ENSMUSP00000147892 TRANSLATION protein_coding - CCDS85499.1 1 185.0 8.0 0.899 3.8 0.0 0.0 -4,-5 0.0601 1 8.65 MINOR ENSMUSG00000045969 Ing1 ENSMUST00000210670 ENSMUSP00000148023 TRANSLATION protein_coding stop - 3 77.0 0.0 0.964 0.0 73.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000045969 Ing1 ENSMUST00000210740 ENSMUSP00000147476 TRANSLATION protein_coding - CCDS85499.1 1 185.0 8.0 0.899 3.8 0.0 0.0 -4,-5 0.0601 1 8.65 MINOR ENSMUSG00000031813 Mvb12a ENSMUST00000212234 - NO_TRANSLATION retained_intron ENSMUSG00000031813 Mvb12a ENSMUST00000212336 - NO_TRANSLATION retained_intron ENSMUSG00000031813 Mvb12a ENSMUST00000212659 - NO_TRANSLATION retained_intron ENSMUSG00000031813 Mvb12a ENSMUST00000034272 ENSMUSP00000034272 TRANSLATION protein_coding - CCDS22398.1 1 271.0 0.0 3.114 1.5 217.0 0.0 -4,-6 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000031813 Mvb12a ENSMUST00000212341 - NO_TRANSLATION retained_intron ENSMUSG00000031813 Mvb12a ENSMUST00000212954 ENSMUSP00000148630 TRANSLATION nonsense_mediated_decay - - 3 72.0 0.0 0.32 0.0 32.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031813 Mvb12a ENSMUST00000212326 ENSMUSP00000148449 TRANSLATION nonsense_mediated_decay - - 3 137.0 0.0 0.92 0.0 65.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031651 Triml1 ENSMUST00000059692 ENSMUSP00000050267 TRANSLATION protein_coding - CCDS22266.1 1 470.0 8.0 2.75 5.0 167.3 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000031651 Triml1 ENSMUST00000211446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031651 Triml1 ENSMUST00000211541 - NO_TRANSLATION retained_intron ENSMUSG00000071047 Ces1a ENSMUST00000209753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071047 Ces1a ENSMUST00000095211 ENSMUSP00000092836 TRANSLATION protein_coding - CCDS22526.1 1 563.0 6.0 12.0 0.1 542.2 0.0 2,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000007594 Hapln4 ENSMUST00000212006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007594 Hapln4 ENSMUST00000007738 ENSMUSP00000007738 TRANSLATION protein_coding - CCDS40365.1 1 400.0 0.0 2.3 5.3 228.9 0.0 3,-2 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000007594 Hapln4 ENSMUST00000213092 - NO_TRANSLATION retained_intron ENSMUSG00000023073 Slc10a2 ENSMUST00000023835 ENSMUSP00000023835 TRANSLATION protein_coding - CCDS22089.1 1 348.0 0.0 5.25 8.5 153.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031616 Ednra ENSMUST00000146561 - NO_TRANSLATION retained_intron ENSMUSG00000031616 Ednra ENSMUST00000034029 ENSMUSP00000034029 TRANSLATION protein_coding - CCDS22427.1 1 427.0 0.0 4.44 11.3 119.1 0.0 4,-1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000031880 Rrad ENSMUST00000034351 ENSMUSP00000034351 TRANSLATION protein_coding - CCDS22584.1 1 307.0 14.0 3.15 0.0 93.1 0.0 -4,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000031880 Rrad ENSMUST00000212163 ENSMUSP00000148494 TRANSLATION protein_coding stop - 2 100.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000034863 Ano8 ENSMUST00000213016 - NO_TRANSLATION retained_intron ENSMUSG00000034863 Ano8 ENSMUST00000212768 - NO_TRANSLATION retained_intron ENSMUSG00000034863 Ano8 ENSMUST00000093450 ENSMUSP00000091157 TRANSLATION protein_coding - CCDS52585.1 1 1060.0 0.0 6.532 0.1 559.8 5.0 -4,-5 1.0 5 6.0 PRINCIPAL:2 ENSMUSG00000034863 Ano8 ENSMUST00000213382 ENSMUSP00000149365 TRANSLATION protein_coding - - 5 1104.0 0.0 6.532 0.0 545.8 5.0 -4,-5 0.1628 4 6.0 ALTERNATIVE:2 ENSMUSG00000031858 Mau2 ENSMUST00000212845 ENSMUSP00000148532 TRANSLATION nonsense_mediated_decay - - 1 448.0 0.0 10.66 0.0 0.0 0.0 -2,-5 0.0238 3 -2.0 MINOR ENSMUSG00000031858 Mau2 ENSMUST00000212308 ENSMUSP00000148479 TRANSLATION protein_coding - CCDS85550.1 1 650.0 0.0 14.91 0.1 0.0 0.0 -2,-5 0.2536 8 4.8 MINOR ENSMUSG00000031858 Mau2 ENSMUST00000212451 ENSMUSP00000148601 TRANSLATION protein_coding - - 1 619.0 0.0 15.51 0.4 0.0 0.0 -2,-5 0.6913 8 6.0 ALTERNATIVE:2 ENSMUSG00000031858 Mau2 ENSMUST00000050561 ENSMUSP00000054763 TRANSLATION protein_coding - CCDS40364.1 1 618.0 0.0 15.51 0.4 0.0 0.0 -2,-5 0.9903 7 6.0 PRINCIPAL:2 ENSMUSG00000031858 Mau2 ENSMUST00000212055 - NO_TRANSLATION retained_intron ENSMUSG00000031858 Mau2 ENSMUST00000212596 - NO_TRANSLATION retained_intron ENSMUSG00000031858 Mau2 ENSMUST00000212401 - NO_TRANSLATION retained_intron ENSMUSG00000043787 Defb12 ENSMUST00000062113 ENSMUSP00000060899 TRANSLATION protein_coding - - 1 78.0 0.0 0.0 7.8 23.7 0.0 2,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000037921 Ddx60 ENSMUST00000136121 - NO_TRANSLATION retained_intron ENSMUSG00000037921 Ddx60 ENSMUST00000154398 ENSMUSP00000122841 TRANSLATION protein_coding stop - 5 573.0 0.0 0.88 0.0 0.0 0.0 -4,-7 0.0015 3 -2.0 MINOR ENSMUSG00000037921 Ddx60 ENSMUST00000070631 ENSMUSP00000070741 TRANSLATION protein_coding - CCDS52556.2 5 1710.0 12.0 6.002 1.2 91.2 0.0 -4,-7 1.0 13 15.0 PRINCIPAL:2 ENSMUSG00000037921 Ddx60 ENSMUST00000153806 - NO_TRANSLATION retained_intron ENSMUSG00000037921 Ddx60 ENSMUST00000093485 ENSMUSP00000091197 TRANSLATION protein_coding - - 5 1711.0 12.0 6.002 1.2 91.2 0.0 -4,-7 0.7081 13 15.0 ALTERNATIVE:2 ENSMUSG00000037921 Ddx60 ENSMUST00000156980 ENSMUSP00000120424 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000070003 Ssbp4 ENSMUST00000210006 - NO_TRANSLATION retained_intron ENSMUSG00000070003 Ssbp4 ENSMUST00000211153 - NO_TRANSLATION retained_intron ENSMUSG00000070003 Ssbp4 ENSMUST00000210699 - NO_TRANSLATION retained_intron ENSMUSG00000070003 Ssbp4 ENSMUST00000211488 - NO_TRANSLATION retained_intron ENSMUSG00000070003 Ssbp4 ENSMUST00000211268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070003 Ssbp4 ENSMUST00000211608 ENSMUSP00000147589 TRANSLATION protein_coding stop - 3 164.0 0.0 2.89 0.0 50.5 0.0 -4,-7 0.0186 - -2.0 MINOR ENSMUSG00000070003 Ssbp4 ENSMUST00000211197 ENSMUSP00000147638 TRANSLATION nonsense_mediated_decay - - 3 89.0 0.0 1.48 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070003 Ssbp4 ENSMUST00000210305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070003 Ssbp4 ENSMUST00000211134 - NO_TRANSLATION retained_intron ENSMUSG00000070003 Ssbp4 ENSMUST00000210382 - NO_TRANSLATION retained_intron ENSMUSG00000070003 Ssbp4 ENSMUST00000210756 - NO_TRANSLATION retained_intron ENSMUSG00000070003 Ssbp4 ENSMUST00000210580 ENSMUSP00000148255 TRANSLATION protein_coding stop - 5 196.0 0.0 2.89 0.0 81.9 0.0 -4,-7 0.0157 - -2.0 MINOR ENSMUSG00000070003 Ssbp4 ENSMUST00000210369 ENSMUSP00000147704 TRANSLATION protein_coding - - 2 286.0 0.0 0.0 0.0 191.6 0.0 -4,-7 0.0245 1 6.0 MINOR ENSMUSG00000070003 Ssbp4 ENSMUST00000209430 - NO_TRANSLATION retained_intron ENSMUSG00000070003 Ssbp4 ENSMUST00000049908 ENSMUSP00000059039 TRANSLATION protein_coding - CCDS22374.1 1 363.0 0.0 2.89 25.1 191.6 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031725 Ces1f ENSMUST00000151261 - NO_TRANSLATION retained_intron ENSMUSG00000031725 Ces1f ENSMUST00000156737 - NO_TRANSLATION retained_intron ENSMUSG00000031725 Ces1f ENSMUST00000034178 ENSMUSP00000034178 TRANSLATION protein_coding - CCDS22530.1 1 561.0 6.0 12.03 7.6 531.9 0.0 3,-2 1.0 21 20.0 PRINCIPAL:1 ENSMUSG00000031725 Ces1f ENSMUST00000124066 - NO_TRANSLATION retained_intron ENSMUSG00000031725 Ces1f ENSMUST00000140026 ENSMUSP00000116525 TRANSLATION nonsense_mediated_decay - - 5 50.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0 - -2.0 MINOR ENSMUSG00000031725 Ces1f ENSMUST00000133879 - NO_TRANSLATION retained_intron ENSMUSG00000056155 Nanos3 ENSMUST00000070102 ENSMUSP00000067385 TRANSLATION protein_coding - CCDS22470.1 1 178.0 8.0 1.0 1.8 88.9 0.0 -4,-7 0.7388 - 15.0 ALTERNATIVE:2 ENSMUSG00000056155 Nanos3 ENSMUST00000210202 ENSMUSP00000147775 TRANSLATION protein_coding - - 1 174.0 8.0 1.0 1.8 88.9 0.0 -4,-7 0.8296 - 15.0 PRINCIPAL:4 ENSMUSG00000056155 Nanos3 ENSMUST00000211482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053886 Sh2d4a ENSMUST00000212166 ENSMUSP00000148702 TRANSLATION protein_coding start - 1 390.0 0.0 0.899 0.0 47.7 0.0 -4,-7 0.0327 9 -2.0 MINOR ENSMUSG00000053886 Sh2d4a ENSMUST00000066594 ENSMUSP00000070825 TRANSLATION protein_coding - CCDS52564.1 1 421.0 0.0 1.28 3.7 47.7 0.0 -4,-6 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000031886 Ces2e ENSMUST00000109410 ENSMUSP00000105037 TRANSLATION protein_coding - CCDS22588.1 1 559.0 6.0 10.5 5.4 566.1 0.0 4,-1 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000031886 Ces2e ENSMUST00000034355 ENSMUSP00000034355 TRANSLATION protein_coding - CCDS22588.1 1 559.0 6.0 10.5 5.4 566.1 0.0 4,-1 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000038416 Cdc16 ENSMUST00000129872 - NO_TRANSLATION retained_intron ENSMUSG00000038416 Cdc16 ENSMUST00000137360 - NO_TRANSLATION retained_intron ENSMUSG00000038416 Cdc16 ENSMUST00000043962 ENSMUSP00000047950 TRANSLATION protein_coding - CCDS22114.1 1 620.0 0.0 13.95 24.3 111.0 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000038416 Cdc16 ENSMUST00000134645 ENSMUSP00000147594 TRANSLATION protein_coding stop - 1 85.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038416 Cdc16 ENSMUST00000130173 ENSMUSP00000147399 TRANSLATION protein_coding stop - 5 188.0 0.0 3.95 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000051648 Kctd19 ENSMUST00000167294 ENSMUSP00000130831 TRANSLATION protein_coding - CCDS80922.1 1 927.0 0.0 2.05 7.3 32.3 0.0 -4,-5 1.0 - 13.238 PRINCIPAL:1 ENSMUSG00000051648 Kctd19 ENSMUST00000168196 ENSMUSP00000130914 TRANSLATION protein_coding start/stop - 5 150.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000051648 Kctd19 ENSMUST00000168888 ENSMUSP00000131732 TRANSLATION nonsense_mediated_decay - - 5 137.0 0.0 0.5 0.0 37.0 0.0 -4,-5 0.0165 - -2.0 MINOR ENSMUSG00000051648 Kctd19 ENSMUST00000063071 ENSMUSP00000050687 TRANSLATION protein_coding - CCDS40459.1 1 950.0 0.0 2.05 0.7 32.3 0.0 -4,-5 0.4052 - 11.238 MINOR ENSMUSG00000033579 Fa2h ENSMUST00000162216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033579 Fa2h ENSMUST00000159336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033579 Fa2h ENSMUST00000038475 ENSMUSP00000043597 TRANSLATION protein_coding - CCDS22674.1 1 372.0 20.0 3.288 7.2 121.0 0.0 -4,-1 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000033579 Fa2h ENSMUST00000162463 - NO_TRANSLATION retained_intron ENSMUSG00000079038 D130040H23Rik ENSMUST00000212549 ENSMUSP00000148399 TRANSLATION protein_coding - - 1 395.0 44.0 1.63 0.0 188.3 0.0 -4,-5 0.7988 - 18.0 PRINCIPAL:1 ENSMUSG00000079038 D130040H23Rik ENSMUST00000212443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079038 D130040H23Rik ENSMUST00000078257 ENSMUSP00000077378 TRANSLATION protein_coding - CCDS52565.1 2 405.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.1478 - 2.946 MINOR ENSMUSG00000079038 D130040H23Rik ENSMUST00000211805 - NO_TRANSLATION retained_intron ENSMUSG00000025588 Nat1 ENSMUST00000212171 ENSMUSP00000148354 TRANSLATION protein_coding - - 5 293.0 9.0 1.0 17.4 310.4 0.0 -4,-5 0.8736 2 16.0 ALTERNATIVE:1 ENSMUSG00000025588 Nat1 ENSMUST00000026677 ENSMUSP00000026677 TRANSLATION protein_coding - CCDS22337.1 - 290.0 9.0 1.0 17.4 310.4 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:4 ENSMUSG00000015994 Fnta ENSMUST00000209860 - NO_TRANSLATION retained_intron ENSMUSG00000015994 Fnta ENSMUST00000211718 - NO_TRANSLATION retained_intron ENSMUSG00000015994 Fnta ENSMUST00000016138 ENSMUSP00000016138 TRANSLATION protein_coding - CCDS22205.1 1 377.0 5.0 7.9 6.7 173.6 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000015994 Fnta ENSMUST00000209247 - NO_TRANSLATION retained_intron ENSMUSG00000015994 Fnta ENSMUST00000209664 - NO_TRANSLATION retained_intron ENSMUSG00000036840 Siah1a ENSMUST00000045296 ENSMUSP00000044123 TRANSLATION protein_coding - CCDS22504.1 1 282.0 15.0 1.0 28.9 302.9 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000031618 Nr3c2 ENSMUST00000148106 ENSMUSP00000118222 TRANSLATION nonsense_mediated_decay - - 5 698.0 8.0 2.0 0.0 98.7 0.0 -4,-5 0.0015 1 -2.0 MINOR ENSMUSG00000031618 Nr3c2 ENSMUST00000143284 ENSMUSP00000122959 TRANSLATION protein_coding stop - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031618 Nr3c2 ENSMUST00000128862 ENSMUSP00000116008 TRANSLATION protein_coding stop - 2 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031618 Nr3c2 ENSMUST00000034031 ENSMUSP00000034031 TRANSLATION protein_coding - - 5 984.0 28.0 7.25 8.0 190.9 0.0 -4,-5 0.7372 2 19.665 MINOR ENSMUSG00000031618 Nr3c2 ENSMUST00000109913 ENSMUSP00000105539 TRANSLATION protein_coding - CCDS40393.1 5 980.0 28.0 7.25 10.3 200.8 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000031618 Nr3c2 ENSMUST00000109911 ENSMUSP00000105537 TRANSLATION protein_coding - - 5 867.0 22.0 6.25 1.0 177.8 0.0 -4,-5 0.0304 2 10.62 MINOR ENSMUSG00000031618 Nr3c2 ENSMUST00000109912 ENSMUSP00000105538 TRANSLATION protein_coding - CCDS40393.1 1 980.0 28.0 7.25 10.3 200.8 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000031618 Nr3c2 ENSMUST00000126697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036872 Abcc12 ENSMUST00000131806 ENSMUSP00000116866 TRANSLATION nonsense_mediated_decay - - 1 769.0 12.0 8.428 0.0 148.5 5.0 -4,-7 0.006 2 -2.0 MINOR ENSMUSG00000036872 Abcc12 ENSMUST00000129898 ENSMUSP00000122577 TRANSLATION nonsense_mediated_decay - - 1 738.0 12.0 8.278 0.0 148.5 5.0 -4,-7 0.0064 2 -2.0 MINOR ENSMUSG00000036872 Abcc12 ENSMUST00000156610 ENSMUSP00000123578 TRANSLATION nonsense_mediated_decay - - 1 664.0 12.0 6.98 0.0 148.5 5.0 -4,-7 0.0054 2 -2.0 MINOR ENSMUSG00000036872 Abcc12 ENSMUST00000152438 ENSMUSP00000114582 TRANSLATION protein_coding - - 1 738.0 12.0 8.278 0.0 148.5 5.0 -4,-7 0.0064 2 0.0 MINOR ENSMUSG00000036872 Abcc12 ENSMUST00000080115 ENSMUSP00000079014 TRANSLATION protein_coding - CCDS22502.1 1 1366.0 24.0 17.078 3.4 363.2 9.0 -4,-7 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000036872 Abcc12 ENSMUST00000131423 ENSMUSP00000122402 TRANSLATION protein_coding - CCDS22502.1 5 1366.0 24.0 17.078 3.4 363.2 9.0 -4,-7 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000036872 Abcc12 ENSMUST00000156066 ENSMUSP00000120282 TRANSLATION nonsense_mediated_decay start - 1 524.0 9.0 6.125 0.0 172.5 4.0 -4,-5 0.0041 2 -2.0 MINOR ENSMUSG00000031897 Psmb10 ENSMUST00000212686 - NO_TRANSLATION retained_intron ENSMUSG00000031897 Psmb10 ENSMUST00000212595 - NO_TRANSLATION retained_intron ENSMUSG00000031897 Psmb10 ENSMUST00000034369 ENSMUSP00000034369 TRANSLATION protein_coding - CCDS22621.1 1 273.0 0.0 6.25 9.7 213.2 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000031897 Psmb10 ENSMUST00000212938 - NO_TRANSLATION retained_intron ENSMUSG00000031897 Psmb10 ENSMUST00000212332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031897 Psmb10 ENSMUST00000212044 - NO_TRANSLATION retained_intron ENSMUSG00000031897 Psmb10 ENSMUST00000212876 - NO_TRANSLATION retained_intron ENSMUSG00000031782 Coq9 ENSMUST00000159871 ENSMUSP00000124695 TRANSLATION protein_coding stop - 5 270.0 0.0 4.25 0.0 72.6 0.0 -4,0 0.0006 7 -2.0 MINOR ENSMUSG00000031782 Coq9 ENSMUST00000159424 - NO_TRANSLATION retained_intron ENSMUSG00000031782 Coq9 ENSMUST00000160779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031782 Coq9 ENSMUST00000034234 ENSMUSP00000034234 TRANSLATION protein_coding - CCDS22550.1 1 313.0 0.0 5.58 6.0 123.2 0.0 -4,0 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000031782 Coq9 ENSMUST00000160364 - NO_TRANSLATION retained_intron ENSMUSG00000031782 Coq9 ENSMUST00000211859 ENSMUSP00000148339 TRANSLATION protein_coding start/stop - 5 98.0 0.0 1.7 0.0 65.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000031782 Coq9 ENSMUST00000161208 - NO_TRANSLATION retained_intron ENSMUSG00000031782 Coq9 ENSMUST00000160998 - NO_TRANSLATION retained_intron ENSMUSG00000031782 Coq9 ENSMUST00000159638 - NO_TRANSLATION retained_intron ENSMUSG00000069633 Pex11g ENSMUST00000111081 ENSMUSP00000106710 TRANSLATION protein_coding - - 1 176.0 0.0 2.525 0.0 94.8 1.0 -4,-7 0.0015 1 3.186 MINOR ENSMUSG00000069633 Pex11g ENSMUST00000004686 ENSMUSP00000004686 TRANSLATION protein_coding - CCDS22061.1 1 241.0 0.0 3.975 8.4 193.4 2.0 -4,-1 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000069633 Pex11g ENSMUST00000118194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062181 Ces3b ENSMUST00000173838 - NO_TRANSLATION retained_intron ENSMUSG00000062181 Ces3b ENSMUST00000074403 ENSMUSP00000074004 TRANSLATION protein_coding - CCDS52653.1 1 521.0 5.0 11.0 0.0 458.6 0.0 0,-4 0.0233 4 10.344 MINOR ENSMUSG00000062181 Ces3b ENSMUST00000093221 ENSMUSP00000090909 TRANSLATION protein_coding - CCDS22590.2 1 571.0 6.0 12.5 4.2 519.5 0.0 0,-4 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000062181 Ces3b ENSMUST00000173088 ENSMUSP00000134204 TRANSLATION nonsense_mediated_decay start - 5 122.0 1.0 2.5 0.0 31.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031534 Smim19 ENSMUST00000163774 ENSMUSP00000131855 TRANSLATION protein_coding - CCDS52521.1 1 112.0 0.0 0.8 0.0 168.8 1.0 -4,-6 0.2302 1 12.0 MINOR ENSMUSG00000031534 Smim19 ENSMUST00000033935 ENSMUSP00000033935 TRANSLATION protein_coding - CCDS52520.1 1 107.0 0.0 0.8 20.7 168.8 1.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000002948 Map2k7 ENSMUST00000207247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002948 Map2k7 ENSMUST00000110996 ENSMUSP00000106624 TRANSLATION protein_coding - - 1 391.0 19.0 8.58 0.0 192.4 0.0 -4,-6 0.0365 7 14.0 MINOR ENSMUSG00000002948 Map2k7 ENSMUST00000110999 ENSMUSP00000106627 TRANSLATION protein_coding - CCDS80852.1 1 452.0 19.0 8.58 0.1 192.4 0.0 -4,-5 0.0922 8 14.0 MINOR ENSMUSG00000002948 Map2k7 ENSMUST00000110995 ENSMUSP00000106623 TRANSLATION protein_coding - CCDS80853.1 1 379.0 19.0 8.58 0.0 192.4 0.0 -4,-5 0.0751 6 14.0 MINOR ENSMUSG00000002948 Map2k7 ENSMUST00000110994 ENSMUSP00000106622 TRANSLATION protein_coding - CCDS80854.1 1 346.0 19.0 8.58 1.5 192.4 0.0 -4,-5 0.2914 6 14.108 MINOR ENSMUSG00000002948 Map2k7 ENSMUST00000129537 - NO_TRANSLATION retained_intron ENSMUSG00000002948 Map2k7 ENSMUST00000003027 ENSMUSP00000003027 TRANSLATION protein_coding - CCDS40208.1 1 468.0 19.0 8.58 0.1 192.4 0.0 -4,-6 0.1252 8 14.0 MINOR ENSMUSG00000002948 Map2k7 ENSMUST00000062686 ENSMUSP00000054512 TRANSLATION protein_coding - CCDS52474.1 1 435.0 19.0 8.58 19.7 192.4 0.0 -4,-6 0.9603 8 18.0 ALTERNATIVE:1 ENSMUSG00000002948 Map2k7 ENSMUST00000129866 ENSMUSP00000146485 TRANSLATION protein_coding start - 3 79.0 4.0 1.75 0.0 84.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000002948 Map2k7 ENSMUST00000110998 ENSMUSP00000106626 TRANSLATION protein_coding - CCDS40209.1 1 419.0 19.0 8.58 19.7 192.4 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:4 ENSMUSG00000031654 Cbln1 ENSMUST00000211279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031654 Cbln1 ENSMUST00000169693 ENSMUSP00000126575 TRANSLATION protein_coding - CCDS22506.1 5 193.0 0.0 2.6 14.6 93.1 0.0 3,-1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031654 Cbln1 ENSMUST00000034076 ENSMUSP00000034076 TRANSLATION protein_coding - CCDS22506.1 1 193.0 0.0 2.6 14.6 93.1 0.0 3,-1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038143 Stox2 ENSMUST00000110367 ENSMUSP00000105996 TRANSLATION protein_coding - CCDS40336.1 1 801.0 0.0 1.1 1.7 110.8 0.0 -4,-7 0.3108 10 9.324 MINOR ENSMUSG00000038143 Stox2 ENSMUST00000211882 ENSMUSP00000148776 TRANSLATION protein_coding - - 5 927.0 0.0 2.098 0.3 110.8 0.0 -3,-6 0.4429 10 12.0 MINOR ENSMUSG00000038143 Stox2 ENSMUST00000181417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038143 Stox2 ENSMUST00000210030 ENSMUSP00000147281 TRANSLATION protein_coding - CCDS40336.1 1 801.0 0.0 1.1 1.7 110.8 0.0 -4,-7 0.3108 10 9.324 MINOR ENSMUSG00000038143 Stox2 ENSMUST00000209337 ENSMUSP00000148231 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.6 0.0 56.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000038143 Stox2 ENSMUST00000210153 ENSMUSP00000147670 TRANSLATION protein_coding stop - 1 98.0 0.0 1.2 0.0 110.8 0.0 -4,-6 0.0132 - -2.0 MINOR ENSMUSG00000038143 Stox2 ENSMUST00000209941 - NO_TRANSLATION retained_intron ENSMUSG00000038143 Stox2 ENSMUST00000079195 ENSMUSP00000078190 TRANSLATION protein_coding - CCDS52548.1 1 926.0 0.0 1.298 16.5 110.8 0.0 -4,-2 1.0 13 13.714 PRINCIPAL:1 ENSMUSG00000038143 Stox2 ENSMUST00000211737 ENSMUSP00000147477 TRANSLATION protein_coding - CCDS85535.1 1 863.0 0.0 1.298 2.9 110.8 0.0 -4,-2 0.3599 11 10.206 MINOR ENSMUSG00000048148 Nwd1 ENSMUST00000161557 ENSMUSP00000125470 TRANSLATION nonsense_mediated_decay - - 1 77.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048148 Nwd1 ENSMUST00000163026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048148 Nwd1 ENSMUST00000161386 - NO_TRANSLATION retained_intron ENSMUSG00000048148 Nwd1 ENSMUST00000160443 ENSMUSP00000124446 TRANSLATION nonsense_mediated_decay - - 5 77.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048148 Nwd1 ENSMUST00000162248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048148 Nwd1 ENSMUST00000160912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048148 Nwd1 ENSMUST00000093427 ENSMUSP00000091135 TRANSLATION protein_coding - - 5 1563.0 15.0 5.19 4.9 80.0 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000048148 Nwd1 ENSMUST00000228312 ENSMUSP00000154488 TRANSLATION protein_coding - - - 1562.0 15.0 4.71 0.0 119.2 0.0 -4,-2 0.7002 14 13.04 MINOR ENSMUSG00000048148 Nwd1 ENSMUST00000161254 ENSMUSP00000124804 TRANSLATION protein_coding - CCDS22418.2 1 1521.0 15.0 4.71 0.0 80.0 0.0 -4,-5 0.1929 14 13.04 MINOR ENSMUSG00000033430 Terf2ip ENSMUST00000212732 - NO_TRANSLATION retained_intron ENSMUSG00000033430 Terf2ip ENSMUST00000052138 ENSMUSP00000052170 TRANSLATION protein_coding - CCDS52678.1 1 393.0 0.0 1.5 7.4 163.7 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000031885 Cbfb ENSMUST00000186070 - NO_TRANSLATION retained_intron ENSMUSG00000031885 Cbfb ENSMUST00000109395 ENSMUSP00000105022 TRANSLATION protein_coding - CCDS52655.1 1 155.0 0.0 3.665 0.7 246.0 0.0 -4,-6 0.0079 4 7.74 MINOR ENSMUSG00000031885 Cbfb ENSMUST00000187323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031885 Cbfb ENSMUST00000109392 ENSMUSP00000105019 TRANSLATION protein_coding - CCDS52654.1 1 182.0 0.0 4.5 0.0 283.2 0.0 -4,-6 0.1531 4 11.64 MINOR ENSMUSG00000031885 Cbfb ENSMUST00000190915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031885 Cbfb ENSMUST00000052209 ENSMUSP00000059382 TRANSLATION protein_coding - CCDS22592.1 1 187.0 0.0 4.665 28.2 283.7 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000031885 Cbfb ENSMUST00000109394 ENSMUSP00000105021 TRANSLATION protein_coding - CCDS52656.1 1 148.0 0.0 3.665 3.2 104.0 0.0 -4,-6 0.0262 5 4.326 MINOR ENSMUSG00000002342 Tmem161a ENSMUST00000147656 ENSMUSP00000138017 TRANSLATION nonsense_mediated_decay - - 1 323.0 0.0 0.0 0.0 344.2 4.0 -1,-4 0.003 2 -2.0 MINOR ENSMUSG00000002342 Tmem161a ENSMUST00000125755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002342 Tmem161a ENSMUST00000133084 - NO_TRANSLATION retained_intron ENSMUSG00000002342 Tmem161a ENSMUST00000182942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002342 Tmem161a ENSMUST00000002413 ENSMUSP00000002413 TRANSLATION protein_coding - CCDS40369.1 1 480.0 0.0 0.0 10.9 594.9 9.0 -1,-4 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000002342 Tmem161a ENSMUST00000182980 ENSMUSP00000138499 TRANSLATION protein_coding - CCDS80890.1 1 328.0 0.0 0.0 0.1 380.9 7.0 -3,-5 0.0358 1 0.0 MINOR ENSMUSG00000002342 Tmem161a ENSMUST00000143543 - NO_TRANSLATION retained_intron ENSMUSG00000002342 Tmem161a ENSMUST00000126268 - NO_TRANSLATION retained_intron ENSMUSG00000002342 Tmem161a ENSMUST00000123923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002342 Tmem161a ENSMUST00000125906 ENSMUSP00000137791 TRANSLATION nonsense_mediated_decay start - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000002342 Tmem161a ENSMUST00000133339 - NO_TRANSLATION retained_intron ENSMUSG00000002342 Tmem161a ENSMUST00000182715 ENSMUSP00000138432 TRANSLATION nonsense_mediated_decay - - 1 192.0 0.0 0.0 0.0 45.1 0.0 1,-3 0.0033 - -2.0 MINOR ENSMUSG00000002342 Tmem161a ENSMUST00000182365 ENSMUSP00000138641 TRANSLATION protein_coding stop - 5 126.0 0.0 0.0 0.0 112.6 0.0 -1,-4 0.0 1 -2.0 MINOR ENSMUSG00000002342 Tmem161a ENSMUST00000149105 ENSMUSP00000123084 TRANSLATION protein_coding start - 5 454.0 0.0 0.0 1.1 527.1 9.0 -1,-4 0.0464 2 -2.0 MINOR ENSMUSG00000003849 Nqo1 ENSMUST00000003947 ENSMUSP00000003947 TRANSLATION protein_coding - CCDS40465.1 1 274.0 19.0 5.0 15.1 168.7 0.0 -4,-2 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000031530 Dusp4 ENSMUST00000033930 ENSMUSP00000033930 TRANSLATION protein_coding - CCDS22241.1 1 398.0 8.0 2.16 6.4 192.8 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000031748 Gnao1 ENSMUST00000137202 ENSMUSP00000119220 TRANSLATION protein_coding stop - 3 179.0 10.0 4.0 0.0 191.2 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000031748 Gnao1 ENSMUST00000130974 - NO_TRANSLATION retained_intron ENSMUSG00000031748 Gnao1 ENSMUST00000155245 - NO_TRANSLATION retained_intron ENSMUSG00000031748 Gnao1 ENSMUST00000138659 ENSMUSP00000148550 TRANSLATION protein_coding - CCDS85585.1 1 354.0 24.0 7.83 34.4 400.7 0.0 -4,-5 0.9532 14 20.224 MINOR ENSMUSG00000031748 Gnao1 ENSMUST00000144451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031748 Gnao1 ENSMUST00000127900 ENSMUSP00000116826 TRANSLATION nonsense_mediated_decay start - 5 101.0 1.0 2.0 0.0 50.7 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000031748 Gnao1 ENSMUST00000142466 ENSMUSP00000118463 TRANSLATION protein_coding start - 5 109.0 7.0 2.528 0.0 129.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031748 Gnao1 ENSMUST00000034198 ENSMUSP00000034198 TRANSLATION protein_coding - CCDS22532.1 1 354.0 24.0 8.58 34.4 405.3 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000031748 Gnao1 ENSMUST00000149530 ENSMUSP00000115007 TRANSLATION protein_coding start - 5 74.0 4.0 1.495 0.0 84.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031748 Gnao1 ENSMUST00000212008 - NO_TRANSLATION retained_intron ENSMUSG00000031748 Gnao1 ENSMUST00000125695 - NO_TRANSLATION retained_intron ENSMUSG00000031748 Gnao1 ENSMUST00000125716 ENSMUSP00000114144 TRANSLATION protein_coding - CCDS22532.1 1 354.0 24.0 8.58 34.4 405.3 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000031921 Terf2 ENSMUST00000068388 ENSMUSP00000065586 TRANSLATION protein_coding - CCDS72167.1 1 476.0 0.0 7.5 0.0 233.4 0.0 -4,-6 0.3173 7 8.0 MINOR ENSMUSG00000031921 Terf2 ENSMUST00000142616 ENSMUSP00000118589 TRANSLATION nonsense_mediated_decay start - 1 179.0 0.0 4.5 0.0 107.5 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000031921 Terf2 ENSMUST00000136178 - NO_TRANSLATION retained_intron ENSMUSG00000031921 Terf2 ENSMUST00000133925 ENSMUSP00000118759 TRANSLATION protein_coding - CCDS22646.2 1 540.0 0.0 7.5 1.1 235.3 0.0 -4,-6 1.0 9 9.0 PRINCIPAL:2 ENSMUSG00000031921 Terf2 ENSMUST00000116425 ENSMUSP00000112126 TRANSLATION protein_coding - CCDS52666.1 1 470.0 0.0 6.2 0.0 187.4 0.0 -4,-6 0.0295 7 4.402 MINOR ENSMUSG00000031921 Terf2 ENSMUST00000068421 ENSMUSP00000068948 TRANSLATION protein_coding - - 5 541.0 0.0 7.5 1.1 235.3 0.0 -4,-6 0.5718 9 9.0 ALTERNATIVE:2 ENSMUSG00000031921 Terf2 ENSMUST00000155834 - NO_TRANSLATION retained_intron ENSMUSG00000031921 Terf2 ENSMUST00000141205 - NO_TRANSLATION retained_intron ENSMUSG00000044748 Defb1 ENSMUST00000051017 ENSMUSP00000051754 TRANSLATION protein_coding - CCDS40282.1 1 69.0 3.0 1.0 3.7 42.6 0.0 2,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031533 Mrps31 ENSMUST00000211083 - NO_TRANSLATION retained_intron ENSMUSG00000031533 Mrps31 ENSMUST00000033934 ENSMUSP00000033934 TRANSLATION protein_coding - CCDS22176.1 1 384.0 0.0 2.0 7.7 383.1 0.0 -4,-1 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000061577 Adgrg5 ENSMUST00000128308 ENSMUSP00000120217 TRANSLATION nonsense_mediated_decay - - 1 147.0 0.0 0.619 0.0 0.0 1.0 1,-3 0.0032 - -2.0 MINOR ENSMUSG00000061577 Adgrg5 ENSMUST00000142991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061577 Adgrg5 ENSMUST00000166802 ENSMUSP00000132628 TRANSLATION protein_coding - CCDS52637.1 1 524.0 0.0 4.3465 4.9 161.5 9.0 1,-3 0.9875 - 10.0 ALTERNATIVE:1 ENSMUSG00000061577 Adgrg5 ENSMUST00000153448 ENSMUSP00000122780 TRANSLATION protein_coding stop - 5 106.0 0.0 0.3015 0.0 0.0 1.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000061577 Adgrg5 ENSMUST00000074570 ENSMUSP00000074155 TRANSLATION protein_coding - CCDS22552.1 1 523.0 0.0 4.3465 4.9 161.5 9.0 1,-3 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000110430 Cmtm1 ENSMUST00000160596 ENSMUSP00000124656 TRANSLATION protein_coding - - 5 391.0 0.0 1.4 0.0 0.0 3.0 -4,-2 0.1517 - 6.0 ALTERNATIVE:2 ENSMUSG00000110430 Cmtm1 ENSMUST00000159039 ENSMUSP00000124855 TRANSLATION protein_coding - CCDS57636.1 1 303.0 0.0 1.4 0.0 0.0 3.0 -4,-2 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000035237 Lcat ENSMUST00000038896 ENSMUSP00000038232 TRANSLATION protein_coding - CCDS22622.1 1 438.0 0.0 5.2 7.8 363.7 0.0 4,-1 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000025317 Car5a ENSMUST00000057653 ENSMUSP00000060457 TRANSLATION protein_coding - CCDS22731.1 1 299.0 3.0 5.75 0.0 286.5 0.0 -4,0 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000025317 Car5a ENSMUST00000151462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053226 Dand5 ENSMUST00000238279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053226 Dand5 ENSMUST00000065539 ENSMUSP00000070057 TRANSLATION protein_coding - CCDS22477.1 1 185.0 0.0 1.0 4.3 75.8 0.0 1,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000033545 Znrf1 ENSMUST00000174454 ENSMUSP00000133519 TRANSLATION protein_coding - - 3 65.0 4.0 2.08 0.0 39.7 0.0 -4,-5 0.0031 - 12.852 MINOR ENSMUSG00000033545 Znrf1 ENSMUST00000174376 ENSMUSP00000133455 TRANSLATION nonsense_mediated_decay start - 5 54.0 8.0 0.15 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000033545 Znrf1 ENSMUST00000095176 ENSMUSP00000092799 TRANSLATION protein_coding - CCDS22676.1 1 227.0 9.0 2.98 14.7 39.7 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000033545 Znrf1 ENSMUST00000173481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033545 Znrf1 ENSMUST00000171182 ENSMUSP00000127956 TRANSLATION protein_coding - CCDS52673.1 3 195.0 7.0 1.73 0.0 39.7 0.0 -4,-2 0.07 2 14.154 MINOR ENSMUSG00000033545 Znrf1 ENSMUST00000166859 ENSMUSP00000132939 TRANSLATION protein_coding - CCDS52674.1 5 127.0 6.0 2.83 0.0 39.7 0.0 -4,-7 0.0701 - 15.702 MINOR ENSMUSG00000033545 Znrf1 ENSMUST00000168428 ENSMUSP00000126684 TRANSLATION protein_coding - CCDS22676.1 1 227.0 9.0 2.98 14.7 39.7 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000033545 Znrf1 ENSMUST00000173922 ENSMUSP00000134369 TRANSLATION nonsense_mediated_decay start - 2 28.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000033545 Znrf1 ENSMUST00000173506 ENSMUSP00000133993 TRANSLATION protein_coding - CCDS22676.1 2 227.0 9.0 2.98 14.7 39.7 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000033545 Znrf1 ENSMUST00000173819 ENSMUSP00000133361 TRANSLATION protein_coding start - 3 41.0 3.0 1.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033545 Znrf1 ENSMUST00000174333 ENSMUSP00000134634 TRANSLATION protein_coding - CCDS52674.1 3 127.0 6.0 2.83 0.0 39.7 0.0 -4,-7 0.0701 - 15.702 MINOR ENSMUSG00000033545 Znrf1 ENSMUST00000173781 ENSMUSP00000134232 TRANSLATION protein_coding - - 3 65.0 4.0 2.08 0.0 39.7 0.0 -4,-5 0.0031 - 12.852 MINOR ENSMUSG00000033545 Znrf1 ENSMUST00000173726 ENSMUSP00000133472 TRANSLATION protein_coding start - 3 88.0 7.0 1.73 2.0 39.7 0.0 -4,-7 0.1411 1 -2.0 MINOR ENSMUSG00000033545 Znrf1 ENSMUST00000172856 ENSMUSP00000133309 TRANSLATION protein_coding - CCDS22676.1 5 227.0 9.0 2.98 14.7 39.7 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000033545 Znrf1 ENSMUST00000173692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001482 Def8 ENSMUST00000128424 ENSMUSP00000115137 TRANSLATION protein_coding stop - 3 218.0 8.0 0.4 0.0 28.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001482 Def8 ENSMUST00000212883 ENSMUSP00000148280 TRANSLATION protein_coding stop - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001482 Def8 ENSMUST00000132063 ENSMUSP00000120265 TRANSLATION protein_coding stop - 5 99.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001482 Def8 ENSMUST00000065534 ENSMUSP00000070579 TRANSLATION protein_coding - CCDS22759.1 1 448.0 20.0 4.04 16.9 253.9 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000001482 Def8 ENSMUST00000124741 ENSMUSP00000122532 TRANSLATION protein_coding stop - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001482 Def8 ENSMUST00000108832 ENSMUSP00000104460 TRANSLATION protein_coding - CCDS57648.1 5 472.0 20.0 4.04 0.0 253.9 0.0 -4,-6 0.1318 2 18.0 MINOR ENSMUSG00000001482 Def8 ENSMUST00000212391 ENSMUSP00000148771 TRANSLATION protein_coding stop - 2 121.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001482 Def8 ENSMUST00000108830 ENSMUSP00000104458 TRANSLATION protein_coding - CCDS22759.1 1 448.0 20.0 4.04 16.9 253.9 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000001482 Def8 ENSMUST00000093049 ENSMUSP00000090737 TRANSLATION protein_coding - - 1 483.0 18.0 3.74 0.0 237.4 0.0 -4,-5 0.0014 1 15.078 MINOR ENSMUSG00000001482 Def8 ENSMUST00000212827 ENSMUSP00000148360 TRANSLATION protein_coding stop - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001482 Def8 ENSMUST00000001522 ENSMUSP00000001522 TRANSLATION protein_coding - CCDS57647.1 1 460.0 20.0 4.04 0.0 253.9 0.0 -4,-6 0.1931 2 18.0 MINOR ENSMUSG00000053399 Adamts18 ENSMUST00000212437 ENSMUSP00000148288 TRANSLATION nonsense_mediated_decay start - 1 148.0 0.0 0.0 0.0 65.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053399 Adamts18 ENSMUST00000212527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053399 Adamts18 ENSMUST00000213076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053399 Adamts18 ENSMUST00000212665 ENSMUSP00000148330 TRANSLATION nonsense_mediated_decay start - 1 117.0 0.0 0.0 0.0 36.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053399 Adamts18 ENSMUST00000213078 - NO_TRANSLATION retained_intron ENSMUSG00000053399 Adamts18 ENSMUST00000213061 - NO_TRANSLATION retained_intron ENSMUSG00000053399 Adamts18 ENSMUST00000093113 ENSMUSP00000090801 TRANSLATION protein_coding - CCDS40485.1 1 1219.0 23.0 7.855 1.1 530.1 0.0 -2,-4 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000059230 Defb4 ENSMUST00000081017 ENSMUSP00000079808 TRANSLATION protein_coding - CCDS40254.1 1 63.0 0.0 1.0 1.1 48.4 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056018 Ccdc7b ENSMUST00000189055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056018 Ccdc7b ENSMUST00000108745 ENSMUSP00000104378 TRANSLATION protein_coding - CCDS52714.1 1 183.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5096 - 0.0 PRINCIPAL:4 ENSMUSG00000056018 Ccdc7b ENSMUST00000026912 ENSMUSP00000026912 TRANSLATION protein_coding - CCDS52713.1 5 381.0 0.0 0.0 0.0 113.1 0.0 -4,-7 0.2872 - 0.0 ALTERNATIVE:2 ENSMUSG00000056018 Ccdc7b ENSMUST00000108744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056018 Ccdc7b ENSMUST00000140887 ENSMUSP00000119034 TRANSLATION nonsense_mediated_decay - - 1 178.0 0.0 0.0 0.0 208.9 0.0 -4,-7 0.1356 - -2.0 MINOR ENSMUSG00000056018 Ccdc7b ENSMUST00000148621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056018 Ccdc7b ENSMUST00000148234 ENSMUSP00000118197 TRANSLATION nonsense_mediated_decay - - 1 178.0 0.0 0.0 0.0 208.9 0.0 -4,-7 0.1356 - -2.0 MINOR ENSMUSG00000047286 Or10k2 ENSMUST00000058609 ENSMUSP00000055435 TRANSLATION protein_coding - CCDS22454.1 - 314.0 0.0 1.0 11.4 149.0 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047286 Or10k2 ENSMUST00000214156 ENSMUSP00000149251 TRANSLATION protein_coding - CCDS22454.1 5 314.0 0.0 1.0 11.4 149.0 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047286 Or10k2 ENSMUST00000209408 ENSMUSP00000147834 TRANSLATION protein_coding - CCDS22454.1 3 314.0 0.0 1.0 11.4 149.0 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031682 1700011L22Rik ENSMUST00000210889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031682 1700011L22Rik ENSMUST00000034109 ENSMUSP00000034109 TRANSLATION protein_coding - CCDS52605.1 1 208.0 0.0 1.0 0.1 309.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000004383 Large1 ENSMUST00000212459 ENSMUSP00000148336 TRANSLATION protein_coding - CCDS22420.1 1 756.0 5.0 11.75 22.8 267.3 1.0 -2,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000004383 Large1 ENSMUST00000119826 ENSMUSP00000112617 TRANSLATION protein_coding - CCDS22420.1 5 756.0 5.0 11.75 22.8 267.3 1.0 -2,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000004383 Large1 ENSMUST00000004497 ENSMUSP00000004497 TRANSLATION protein_coding - CCDS22420.1 1 756.0 5.0 11.75 22.8 267.3 1.0 -2,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000004383 Large1 ENSMUST00000146249 - NO_TRANSLATION retained_intron ENSMUSG00000050271 Prag1 ENSMUST00000110492 ENSMUSP00000106118 TRANSLATION protein_coding - CCDS22247.2 1 1373.0 0.0 0.566 0.0 45.8 0.0 -4,-5 1.0 32 12.0 PRINCIPAL:1 ENSMUSG00000050271 Prag1 ENSMUST00000150295 - NO_TRANSLATION retained_intron ENSMUSG00000050271 Prag1 ENSMUST00000145386 - NO_TRANSLATION retained_intron ENSMUSG00000008206 Cers4 ENSMUST00000008350 ENSMUSP00000008350 TRANSLATION protein_coding - CCDS22086.1 1 393.0 0.0 8.83 10.1 166.8 6.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000008206 Cers4 ENSMUST00000176705 - NO_TRANSLATION retained_intron ENSMUSG00000008206 Cers4 ENSMUST00000176837 - NO_TRANSLATION retained_intron ENSMUSG00000008206 Cers4 ENSMUST00000176267 - NO_TRANSLATION retained_intron ENSMUSG00000008206 Cers4 ENSMUST00000176042 ENSMUSP00000135594 TRANSLATION protein_coding stop - 3 56.0 0.0 1.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000008206 Cers4 ENSMUST00000176932 - NO_TRANSLATION retained_intron ENSMUSG00000008206 Cers4 ENSMUST00000175781 - NO_TRANSLATION retained_intron ENSMUSG00000008206 Cers4 ENSMUST00000176130 ENSMUSP00000135652 TRANSLATION nonsense_mediated_decay - - 5 211.0 0.0 5.0 0.0 58.3 5.0 -4,-7 0.0021 3 -2.0 MINOR ENSMUSG00000008206 Cers4 ENSMUST00000177010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034807 Colgalt1 ENSMUST00000212216 - NO_TRANSLATION retained_intron ENSMUSG00000034807 Colgalt1 ENSMUST00000212706 - NO_TRANSLATION retained_intron ENSMUSG00000034807 Colgalt1 ENSMUST00000047903 ENSMUSP00000047923 TRANSLATION protein_coding - CCDS22401.1 1 617.0 0.0 11.75 2.2 185.7 0.0 1,-2 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000002395 Use1 ENSMUST00000127517 - NO_TRANSLATION retained_intron ENSMUSG00000002395 Use1 ENSMUST00000143657 - NO_TRANSLATION retained_intron ENSMUSG00000002395 Use1 ENSMUST00000142685 - NO_TRANSLATION retained_intron ENSMUSG00000002395 Use1 ENSMUST00000139541 ENSMUSP00000122406 TRANSLATION protein_coding stop - 2 74.0 0.0 0.0 0.0 74.8 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000002395 Use1 ENSMUST00000110054 ENSMUSP00000105681 TRANSLATION protein_coding - CCDS22390.1 1 270.0 0.0 2.0 5.5 307.5 1.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000002395 Use1 ENSMUST00000136368 - NO_TRANSLATION retained_intron ENSMUSG00000002395 Use1 ENSMUST00000019169 ENSMUSP00000019169 TRANSLATION protein_coding - CCDS22390.1 1 270.0 0.0 2.0 5.5 307.5 1.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000002395 Use1 ENSMUST00000140236 - NO_TRANSLATION retained_intron ENSMUSG00000002395 Use1 ENSMUST00000137137 - NO_TRANSLATION retained_intron ENSMUSG00000002395 Use1 ENSMUST00000154550 - NO_TRANSLATION retained_intron ENSMUSG00000002395 Use1 ENSMUST00000110053 ENSMUSP00000105680 TRANSLATION protein_coding - CCDS52582.1 1 284.0 0.0 2.0 0.0 307.5 1.0 -4,-5 0.215 7 12.0 MINOR ENSMUSG00000002395 Use1 ENSMUST00000146221 - NO_TRANSLATION retained_intron ENSMUSG00000001995 Sipa1l2 ENSMUST00000212987 ENSMUSP00000148536 TRANSLATION protein_coding - CCDS40518.1 5 1722.0 0.0 3.42 11.3 462.0 0.0 -4,-5 1.0 25 10.5 PRINCIPAL:4 ENSMUSG00000001995 Sipa1l2 ENSMUST00000212604 - NO_TRANSLATION retained_intron ENSMUSG00000001995 Sipa1l2 ENSMUST00000108775 ENSMUSP00000104405 TRANSLATION protein_coding - CCDS40518.1 1 1722.0 0.0 3.42 11.3 462.0 0.0 -4,-5 1.0 25 10.5 PRINCIPAL:4 ENSMUSG00000001995 Sipa1l2 ENSMUST00000212168 ENSMUSP00000148557 TRANSLATION protein_coding - - 1 1704.0 0.0 3.42 9.8 469.3 0.0 -4,-5 0.9144 25 10.562 ALTERNATIVE:1 ENSMUSG00000031497 Tnfsf13b ENSMUST00000208770 - NO_TRANSLATION retained_intron ENSMUSG00000031497 Tnfsf13b ENSMUST00000208166 - NO_TRANSLATION retained_intron ENSMUSG00000031497 Tnfsf13b ENSMUST00000208683 ENSMUSP00000146904 TRANSLATION nonsense_mediated_decay - - 1 194.0 0.0 0.5 0.0 0.0 1.0 -4,-6 0.0026 - -2.0 MINOR ENSMUSG00000031497 Tnfsf13b ENSMUST00000207551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031497 Tnfsf13b ENSMUST00000207792 ENSMUSP00000146694 TRANSLATION protein_coding - CCDS22094.1 1 309.0 0.0 3.5 0.0 42.3 1.0 -4,-6 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000031497 Tnfsf13b ENSMUST00000033892 ENSMUSP00000033892 TRANSLATION protein_coding - CCDS85498.1 1 290.0 0.0 3.0 0.0 42.3 1.0 -4,-6 0.0964 - 4.998 ALTERNATIVE:2 ENSMUSG00000034472 Rasd2 ENSMUST00000139848 ENSMUSP00000118070 TRANSLATION protein_coding - CCDS52602.1 1 266.0 19.0 1.12 27.9 132.2 0.0 -4,-1 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000034472 Rasd2 ENSMUST00000132133 ENSMUSP00000120717 TRANSLATION protein_coding - CCDS52602.1 1 266.0 19.0 1.12 27.9 132.2 0.0 -4,-1 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000051839 Gypa ENSMUST00000063359 ENSMUSP00000070836 TRANSLATION protein_coding - CCDS40399.1 1 168.0 0.0 0.85 0.0 168.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000005698 Ctcf ENSMUST00000132679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005698 Ctcf ENSMUST00000156436 - NO_TRANSLATION retained_intron ENSMUSG00000005698 Ctcf ENSMUST00000128510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005698 Ctcf ENSMUST00000137735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005698 Ctcf ENSMUST00000005841 ENSMUSP00000005841 TRANSLATION protein_coding - CCDS22606.1 1 736.0 42.0 6.4 13.7 139.9 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000005698 Ctcf ENSMUST00000129388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037101 Ttc29 ENSMUST00000137424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037101 Ttc29 ENSMUST00000156432 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037101 Ttc29 ENSMUST00000124713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037101 Ttc29 ENSMUST00000117845 ENSMUSP00000112445 TRANSLATION protein_coding - - 1 59.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 - 0.0 MINOR ENSMUSG00000037101 Ttc29 ENSMUST00000109902 ENSMUSP00000105528 TRANSLATION protein_coding - CCDS22428.1 5 471.0 0.0 6.75 3.2 34.1 0.0 -4,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000037101 Ttc29 ENSMUST00000143157 - NO_TRANSLATION retained_intron ENSMUSG00000037101 Ttc29 ENSMUST00000049395 ENSMUSP00000041919 TRANSLATION protein_coding - CCDS22428.1 1 471.0 0.0 6.75 3.2 34.1 0.0 -4,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000037101 Ttc29 ENSMUST00000126172 ENSMUSP00000122383 TRANSLATION protein_coding stop - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 - -2.0 MINOR ENSMUSG00000031753 Cog4 ENSMUST00000174679 ENSMUSP00000133458 TRANSLATION protein_coding start/stop - 3 180.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000031753 Cog4 ENSMUST00000172668 ENSMUSP00000134252 TRANSLATION protein_coding stop - 3 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031753 Cog4 ENSMUST00000174165 ENSMUSP00000134306 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031753 Cog4 ENSMUST00000034203 ENSMUSP00000034203 TRANSLATION protein_coding - CCDS40477.1 1 785.0 0.0 7.0 8.7 316.6 0.0 -4,-5 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000031753 Cog4 ENSMUST00000172497 - NO_TRANSLATION retained_intron ENSMUSG00000031753 Cog4 ENSMUST00000174800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031753 Cog4 ENSMUST00000174702 - NO_TRANSLATION retained_intron ENSMUSG00000031753 Cog4 ENSMUST00000172897 ENSMUSP00000133583 TRANSLATION nonsense_mediated_decay - - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031753 Cog4 ENSMUST00000165867 ENSMUSP00000128518 TRANSLATION protein_coding - CCDS80931.1 1 712.0 0.0 7.0 1.1 316.6 0.0 -4,-5 0.3646 17 12.039 MINOR ENSMUSG00000031753 Cog4 ENSMUST00000173501 - NO_TRANSLATION retained_intron ENSMUSG00000031753 Cog4 ENSMUST00000174398 ENSMUSP00000133297 TRANSLATION protein_coding start - 5 763.0 0.0 6.25 2.0 316.6 0.0 -4,-5 0.2395 18 -2.0 MINOR ENSMUSG00000031753 Cog4 ENSMUST00000173794 - NO_TRANSLATION retained_intron ENSMUSG00000031753 Cog4 ENSMUST00000172542 ENSMUSP00000133283 TRANSLATION nonsense_mediated_decay - - 5 157.0 0.0 0.0 0.0 152.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031753 Cog4 ENSMUST00000174723 ENSMUSP00000133471 TRANSLATION nonsense_mediated_decay - - 5 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031833 Mast3 ENSMUST00000212673 ENSMUSP00000148792 TRANSLATION protein_coding stop - 5 91.0 0.0 0.0 0.0 61.5 0.0 -4,0 0.0002 2 -2.0 MINOR ENSMUSG00000031833 Mast3 ENSMUST00000212140 ENSMUSP00000148389 TRANSLATION protein_coding start - 5 392.0 0.0 2.4 0.0 38.1 0.0 -4,0 0.0006 3 -2.0 MINOR ENSMUSG00000031833 Mast3 ENSMUST00000211948 ENSMUSP00000148686 TRANSLATION protein_coding - CCDS52577.1 1 1305.0 17.0 6.115 0.4 662.3 0.0 -4,-7 1.0 17 14.0 PRINCIPAL:2 ENSMUSG00000031833 Mast3 ENSMUST00000212875 ENSMUSP00000148351 TRANSLATION protein_coding stop - 2 149.0 0.0 0.0 0.0 113.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000031833 Mast3 ENSMUST00000212172 - NO_TRANSLATION retained_intron ENSMUSG00000031833 Mast3 ENSMUST00000212757 ENSMUSP00000148635 TRANSLATION protein_coding stop - 2 176.0 0.0 0.0 0.0 115.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031833 Mast3 ENSMUST00000211841 - NO_TRANSLATION retained_intron ENSMUSG00000031833 Mast3 ENSMUST00000212001 ENSMUSP00000148817 TRANSLATION protein_coding stop - 3 106.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000031833 Mast3 ENSMUST00000212551 ENSMUSP00000148291 TRANSLATION protein_coding stop - 3 110.0 0.0 0.0 0.0 51.0 0.0 -4,-7 0.0003 2 -2.0 MINOR ENSMUSG00000031833 Mast3 ENSMUST00000166004 ENSMUSP00000128703 TRANSLATION protein_coding - - 5 1321.0 17.0 6.115 0.4 662.3 0.0 -3,-6 0.4654 17 14.0 ALTERNATIVE:2 ENSMUSG00000031833 Mast3 ENSMUST00000212038 ENSMUSP00000148451 TRANSLATION protein_coding stop - 2 135.0 0.0 0.0 0.0 92.4 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000037022 Mmaa ENSMUST00000048718 ENSMUSP00000048826 TRANSLATION protein_coding - CCDS22436.1 1 415.0 14.0 5.8 8.0 0.0 0.0 -4,-1 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000037022 Mmaa ENSMUST00000210231 ENSMUSP00000147987 TRANSLATION nonsense_mediated_decay - - 1 155.0 0.0 0.8 0.0 0.0 0.0 -4,-1 0.0156 3 -2.0 MINOR ENSMUSG00000031517 Gpm6a ENSMUST00000033915 ENSMUSP00000033915 TRANSLATION protein_coding - CCDS22310.1 1 278.0 0.0 0.0 29.7 306.1 0.0 -4,-6 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000070056 Mfhas1 ENSMUST00000037666 ENSMUSP00000044135 TRANSLATION protein_coding - CCDS40319.1 1 1048.0 15.0 0.5 9.6 154.5 0.0 -4,-2 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000070056 Mfhas1 ENSMUST00000154989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070056 Mfhas1 ENSMUST00000209953 ENSMUSP00000147927 TRANSLATION protein_coding start - 1 757.0 15.0 0.0 0.0 78.7 0.0 -4,-7 0.0098 7 -2.0 MINOR ENSMUSG00000093904 Tomm20 ENSMUST00000212771 ENSMUSP00000148566 TRANSLATION protein_coding - - 2 102.0 0.0 1.5 0.0 53.8 1.0 -4,-7 0.0015 - 3.396 MINOR ENSMUSG00000093904 Tomm20 ENSMUST00000179857 ENSMUSP00000136493 TRANSLATION protein_coding - CCDS22786.1 1 145.0 0.0 2.65 34.9 158.6 1.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031796 Cfap20 ENSMUST00000212807 - NO_TRANSLATION retained_intron ENSMUSG00000031796 Cfap20 ENSMUST00000211908 ENSMUSP00000148668 TRANSLATION protein_coding stop - 5 103.0 0.0 2.83 0.0 168.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000031796 Cfap20 ENSMUST00000213086 ENSMUSP00000148651 TRANSLATION protein_coding - - 2 187.0 0.0 3.83 0.0 258.8 0.0 -4,-6 0.008 2 6.312 MINOR ENSMUSG00000031796 Cfap20 ENSMUST00000212579 - NO_TRANSLATION retained_intron ENSMUSG00000031796 Cfap20 ENSMUST00000034249 ENSMUSP00000034249 TRANSLATION protein_coding - CCDS40445.1 1 193.0 0.0 4.83 34.9 320.3 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000031796 Cfap20 ENSMUST00000212131 ENSMUSP00000148415 TRANSLATION nonsense_mediated_decay start - 3 37.0 0.0 0.75 0.0 31.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031796 Cfap20 ENSMUST00000212731 - NO_TRANSLATION retained_intron ENSMUSG00000031796 Cfap20 ENSMUST00000212684 ENSMUSP00000148527 TRANSLATION nonsense_mediated_decay - - 1 62.0 0.0 0.75 0.0 38.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031529 Tnks ENSMUST00000209632 ENSMUSP00000147527 TRANSLATION protein_coding start - 5 48.0 5.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031529 Tnks ENSMUST00000033929 ENSMUSP00000033929 TRANSLATION protein_coding - CCDS22242.1 1 1320.0 6.0 23.73 0.1 526.5 0.0 -4,-1 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000031529 Tnks ENSMUST00000210870 - NO_TRANSLATION retained_intron ENSMUSG00000031529 Tnks ENSMUST00000211065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031529 Tnks ENSMUST00000209904 - NO_TRANSLATION retained_intron ENSMUSG00000031529 Tnks ENSMUST00000210014 ENSMUSP00000147555 TRANSLATION protein_coding start - 3 151.0 6.0 3.5 0.0 74.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000003813 Rad23a ENSMUST00000125711 - NO_TRANSLATION retained_intron ENSMUSG00000003813 Rad23a ENSMUST00000144675 ENSMUSP00000114431 TRANSLATION protein_coding start - 3 147.0 0.0 4.0 0.0 88.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000003813 Rad23a ENSMUST00000144994 - NO_TRANSLATION retained_intron ENSMUSG00000003813 Rad23a ENSMUST00000134395 - NO_TRANSLATION retained_intron ENSMUSG00000003813 Rad23a ENSMUST00000128035 ENSMUSP00000115664 TRANSLATION protein_coding stop - 1 322.0 0.0 7.25 2.5 217.5 0.0 -4,-6 0.0675 8 -2.0 MINOR ENSMUSG00000003813 Rad23a ENSMUST00000109761 ENSMUSP00000105383 TRANSLATION protein_coding - CCDS80908.1 1 363.0 0.0 9.0 12.1 262.0 0.0 -4,-6 0.9969 8 11.0 ALTERNATIVE:1 ENSMUSG00000003813 Rad23a ENSMUST00000003911 ENSMUSP00000003911 TRANSLATION protein_coding - CCDS40414.1 1 362.0 0.0 9.0 12.1 262.0 0.0 -4,-6 1.0 8 11.0 PRINCIPAL:4 ENSMUSG00000065954 Tacc1 ENSMUST00000210933 ENSMUSP00000147876 TRANSLATION protein_coding stop - 2 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0084 2 -2.0 MINOR ENSMUSG00000065954 Tacc1 ENSMUST00000210767 ENSMUSP00000147539 TRANSLATION nonsense_mediated_decay - - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0226 - -2.0 MINOR ENSMUSG00000065954 Tacc1 ENSMUST00000211584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000065954 Tacc1 ENSMUST00000210016 ENSMUSP00000147525 TRANSLATION protein_coding stop - 5 146.0 0.0 0.93 0.0 0.0 0.0 -4,-5 0.0015 2 -2.0 MINOR ENSMUSG00000065954 Tacc1 ENSMUST00000211218 - NO_TRANSLATION retained_intron ENSMUSG00000065954 Tacc1 ENSMUST00000210488 ENSMUSP00000147353 TRANSLATION protein_coding stop - 3 138.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0086 5 -2.0 MINOR ENSMUSG00000065954 Tacc1 ENSMUST00000209827 ENSMUSP00000147382 TRANSLATION nonsense_mediated_decay - - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0226 - -2.0 MINOR ENSMUSG00000065954 Tacc1 ENSMUST00000209633 - NO_TRANSLATION retained_intron ENSMUSG00000065954 Tacc1 ENSMUST00000084512 ENSMUSP00000081560 TRANSLATION protein_coding - CCDS40302.1 1 368.0 0.0 5.68 8.1 0.0 0.0 -4,-7 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000065954 Tacc1 ENSMUST00000084030 ENSMUSP00000081043 TRANSLATION protein_coding - CCDS40303.1 1 776.0 0.0 5.68 0.0 0.0 0.0 -4,-7 0.2833 14 6.0 MINOR ENSMUSG00000065954 Tacc1 ENSMUST00000211622 ENSMUSP00000147499 TRANSLATION nonsense_mediated_decay - - 1 360.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0867 6 -2.0 MINOR ENSMUSG00000065954 Tacc1 ENSMUST00000210645 - NO_TRANSLATION retained_intron ENSMUSG00000065954 Tacc1 ENSMUST00000209441 - NO_TRANSLATION retained_intron ENSMUSG00000031851 Ntpcr ENSMUST00000123554 - NO_TRANSLATION retained_intron ENSMUSG00000031851 Ntpcr ENSMUST00000065135 ENSMUSP00000069384 TRANSLATION protein_coding - CCDS80944.1 1 121.0 7.0 2.5 0.0 129.8 0.0 -4,-7 0.0018 3 8.832 MINOR ENSMUSG00000031851 Ntpcr ENSMUST00000152189 ENSMUSP00000115996 TRANSLATION protein_coding - - 3 186.0 6.0 3.75 0.0 203.7 0.0 -4,-7 0.018 8 14.904 MINOR ENSMUSG00000031851 Ntpcr ENSMUST00000143504 ENSMUSP00000121271 TRANSLATION protein_coding - - 5 153.0 0.0 1.75 0.0 85.7 0.0 -4,-7 0.0 5 1.002 MINOR ENSMUSG00000031851 Ntpcr ENSMUST00000151172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031851 Ntpcr ENSMUST00000146055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031851 Ntpcr ENSMUST00000138656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031851 Ntpcr ENSMUST00000034313 ENSMUSP00000034313 TRANSLATION protein_coding - CCDS22781.1 1 190.0 7.0 4.25 20.4 224.3 0.0 -4,-6 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000046295 Ankle1 ENSMUST00000136522 - NO_TRANSLATION retained_intron ENSMUSG00000046295 Ankle1 ENSMUST00000119976 ENSMUSP00000113162 TRANSLATION protein_coding - CCDS52583.1 1 534.0 0.0 4.725 0.0 72.7 0.0 -3,-6 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000046295 Ankle1 ENSMUST00000120725 ENSMUSP00000112797 TRANSLATION protein_coding - CCDS80893.1 1 514.0 0.0 4.575 0.1 72.7 0.0 -3,-6 0.2442 - 7.7 ALTERNATIVE:2 ENSMUSG00000046295 Ankle1 ENSMUST00000124520 - NO_TRANSLATION retained_intron ENSMUSG00000046295 Ankle1 ENSMUST00000125290 - NO_TRANSLATION retained_intron ENSMUSG00000014776 Nol3 ENSMUST00000014920 ENSMUSP00000014920 TRANSLATION protein_coding - CCDS52657.1 1 220.0 0.0 1.0 1.0 65.2 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000074247 Dda1 ENSMUST00000147642 ENSMUSP00000123665 TRANSLATION protein_coding - CCDS80894.1 2 100.0 0.0 1.25 0.0 57.3 0.0 -4,-7 0.0564 - 6.156 MINOR ENSMUSG00000074247 Dda1 ENSMUST00000150984 - NO_TRANSLATION retained_intron ENSMUSG00000074247 Dda1 ENSMUST00000130098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074247 Dda1 ENSMUST00000147843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074247 Dda1 ENSMUST00000124745 ENSMUSP00000121042 TRANSLATION protein_coding - CCDS52584.1 1 102.0 0.0 2.5 32.0 104.7 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000074247 Dda1 ENSMUST00000138892 ENSMUSP00000122367 TRANSLATION protein_coding - - 3 37.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - 1.2 MINOR ENSMUSG00000074247 Dda1 ENSMUST00000139904 - NO_TRANSLATION retained_intron ENSMUSG00000074247 Dda1 ENSMUST00000127885 - NO_TRANSLATION retained_intron ENSMUSG00000074247 Dda1 ENSMUST00000135052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074247 Dda1 ENSMUST00000098645 - NO_TRANSLATION retained_intron ENSMUSG00000074247 Dda1 ENSMUST00000146677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074439 Defa5 ENSMUST00000098892 ENSMUSP00000096491 TRANSLATION protein_coding - CCDS22152.1 1 93.0 0.0 1.0 0.1 114.0 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000014859 E2f4 ENSMUST00000212037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014859 E2f4 ENSMUST00000015003 ENSMUSP00000015003 TRANSLATION protein_coding - CCDS40456.1 1 410.0 0.0 4.65 5.2 197.4 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000014859 E2f4 ENSMUST00000212572 - NO_TRANSLATION retained_intron ENSMUSG00000001911 Nfix ENSMUST00000076715 ENSMUSP00000076005 TRANSLATION protein_coding - CCDS40412.1 1 400.0 0.0 1.0 4.0 302.6 0.0 -4,-5 0.2493 8 6.888 MINOR ENSMUSG00000001911 Nfix ENSMUST00000109764 ENSMUSP00000105386 TRANSLATION protein_coding - CCDS40411.1 1 494.0 0.0 1.0 8.2 559.8 0.0 -4,-5 1.0 9 14.132 PRINCIPAL:1 ENSMUSG00000001911 Nfix ENSMUST00000148746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001911 Nfix ENSMUST00000132236 - NO_TRANSLATION retained_intron ENSMUSG00000001911 Nfix ENSMUST00000109762 ENSMUSP00000105384 TRANSLATION protein_coding - CCDS80907.1 1 391.0 0.0 1.0 1.0 297.9 0.0 -4,-5 0.1925 7 6.0 MINOR ENSMUSG00000001911 Nfix ENSMUST00000126806 ENSMUSP00000115691 TRANSLATION protein_coding stop - 5 488.0 0.0 1.0 0.0 545.9 0.0 -4,-5 0.0888 9 -2.0 MINOR ENSMUSG00000001911 Nfix ENSMUST00000148644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001911 Nfix ENSMUST00000099070 ENSMUSP00000096669 TRANSLATION protein_coding - CCDS40413.1 1 441.0 0.0 1.0 14.5 458.2 0.0 -4,-5 0.7943 10 10.0 MINOR ENSMUSG00000031605 Klhl2 ENSMUST00000209458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031605 Klhl2 ENSMUST00000209919 - NO_TRANSLATION retained_intron ENSMUSG00000031605 Klhl2 ENSMUST00000034017 ENSMUSP00000034017 TRANSLATION protein_coding - CCDS85544.1 1 593.0 0.0 12.93 12.2 522.9 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000031605 Klhl2 ENSMUST00000210166 ENSMUSP00000147262 TRANSLATION protein_coding - - 1 603.0 0.0 12.8 0.0 522.9 0.0 -4,-5 0.1024 5 11.742 MINOR ENSMUSG00000031605 Klhl2 ENSMUST00000209544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031574 Star ENSMUST00000033979 ENSMUSP00000033979 TRANSLATION protein_coding - CCDS22203.1 1 284.0 0.0 5.0 25.7 182.1 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000031574 Star ENSMUST00000210565 ENSMUSP00000148087 TRANSLATION protein_coding stop - 5 157.0 0.0 2.0 0.0 58.9 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000031791 Tmem38a ENSMUST00000212763 ENSMUSP00000148388 TRANSLATION protein_coding - - 3 165.0 0.0 3.132 0.0 173.7 5.0 -4,-5 0.0029 2 1.272 MINOR ENSMUSG00000031791 Tmem38a ENSMUST00000034244 ENSMUSP00000034244 TRANSLATION protein_coding - CCDS22417.1 1 298.0 0.0 5.59 10.1 270.6 6.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000031791 Tmem38a ENSMUST00000211914 ENSMUSP00000148844 TRANSLATION nonsense_mediated_decay - - 5 115.0 0.0 2.2145 0.0 70.9 5.0 -4,-5 0.0036 1 -2.0 MINOR ENSMUSG00000031767 Nudt7 ENSMUST00000073521 ENSMUSP00000073213 TRANSLATION protein_coding - CCDS22687.1 1 236.0 4.0 3.75 5.0 43.2 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000031767 Nudt7 ENSMUST00000147605 ENSMUSP00000114598 TRANSLATION protein_coding - CCDS22688.2 1 216.0 4.0 3.0 0.0 0.0 0.0 -4,-5 0.0084 10 8.5 MINOR ENSMUSG00000031767 Nudt7 ENSMUST00000066514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031767 Nudt7 ENSMUST00000109109 ENSMUSP00000104737 TRANSLATION protein_coding - CCDS80935.1 1 260.0 4.0 3.75 0.0 43.2 0.0 -4,-2 0.152 10 16.0 MINOR ENSMUSG00000031767 Nudt7 ENSMUST00000134593 ENSMUSP00000116868 TRANSLATION protein_coding - CCDS80934.1 1 171.0 4.0 2.95 0.0 36.6 0.0 -4,-5 0.014 6 13.48 MINOR ENSMUSG00000050756 Defb6 ENSMUST00000063112 ENSMUSP00000060836 TRANSLATION protein_coding - CCDS40255.1 1 63.0 0.0 1.0 1.1 33.9 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031838 Ifi30 ENSMUST00000222087 ENSMUSP00000159394 TRANSLATION protein_coding - - 1 248.0 3.0 5.0 0.0 105.5 0.0 3,-2 0.8165 5 15.0 PRINCIPAL:1 ENSMUSG00000047866 Lonp2 ENSMUST00000155433 ENSMUSP00000118737 TRANSLATION nonsense_mediated_decay - - 5 659.0 15.0 6.575 0.0 158.0 0.0 -4,-7 0.02 12 -2.0 MINOR ENSMUSG00000047866 Lonp2 ENSMUST00000122188 ENSMUSP00000113834 TRANSLATION protein_coding - - 2 710.0 15.0 7.96 0.0 130.2 0.0 -4,-7 0.0025 13 14.304 MINOR ENSMUSG00000047866 Lonp2 ENSMUST00000121673 ENSMUSP00000113381 TRANSLATION protein_coding - CCDS52624.1 5 432.0 4.0 6.0 0.0 33.8 0.0 -4,-6 0.048 6 0.048 MINOR ENSMUSG00000047866 Lonp2 ENSMUST00000034141 ENSMUSP00000034141 TRANSLATION protein_coding - CCDS22503.1 1 852.0 15.0 8.975 17.6 158.0 0.0 -4,-7 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000031783 Polr2c ENSMUST00000212744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031783 Polr2c ENSMUST00000211957 - NO_TRANSLATION retained_intron ENSMUSG00000031783 Polr2c ENSMUST00000212124 ENSMUSP00000148321 TRANSLATION protein_coding start - 3 170.0 4.0 3.25 0.0 109.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031783 Polr2c ENSMUST00000109521 ENSMUSP00000105147 TRANSLATION protein_coding - CCDS40442.1 1 275.0 4.0 7.25 36.9 192.2 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000031783 Polr2c ENSMUST00000211939 ENSMUSP00000148830 TRANSLATION protein_coding - - 2 439.0 4.0 5.75 0.0 165.1 0.0 -4,-5 0.0013 3 11.374 MINOR ENSMUSG00000031783 Polr2c ENSMUST00000212120 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031783 Polr2c ENSMUST00000212848 ENSMUSP00000148434 TRANSLATION nonsense_mediated_decay start - 3 128.0 3.0 2.5 0.0 78.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074064 Mlycd ENSMUST00000098367 ENSMUSP00000095970 TRANSLATION protein_coding - CCDS22703.1 1 492.0 0.0 5.0 7.8 318.6 0.0 -3,1 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000074064 Mlycd ENSMUST00000145121 - NO_TRANSLATION retained_intron ENSMUSG00000046794 Ppp1r3b ENSMUST00000211472 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046794 Ppp1r3b ENSMUST00000211648 ENSMUSP00000147633 TRANSLATION protein_coding - CCDS22243.1 3 284.0 0.0 0.8 14.7 121.0 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000046794 Ppp1r3b ENSMUST00000070481 ENSMUSP00000065679 TRANSLATION protein_coding - CCDS22243.1 1 284.0 0.0 0.8 14.7 121.0 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000046794 Ppp1r3b ENSMUST00000210337 ENSMUSP00000147736 TRANSLATION protein_coding - CCDS22243.1 2 284.0 0.0 0.8 14.7 121.0 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000050357 Carmil2 ENSMUST00000213019 ENSMUSP00000148422 TRANSLATION protein_coding - - 1 1397.0 0.0 11.925 2.8 247.8 0.0 -4,-5 1.0 19 13.0 PRINCIPAL:1 ENSMUSG00000050357 Carmil2 ENSMUST00000212643 - NO_TRANSLATION retained_intron ENSMUSG00000050357 Carmil2 ENSMUST00000062574 - NO_TRANSLATION retained_intron ENSMUSG00000031766 Slc12a3 ENSMUST00000211942 - NO_TRANSLATION retained_intron ENSMUSG00000031766 Slc12a3 ENSMUST00000211905 ENSMUSP00000148537 TRANSLATION protein_coding start - 1 130.0 0.0 2.1 0.0 87.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000031766 Slc12a3 ENSMUST00000212134 ENSMUSP00000148455 TRANSLATION protein_coding - - 1 956.0 0.0 18.5 0.0 934.5 10.0 -4,-5 0.1291 2 4.008 MINOR ENSMUSG00000031766 Slc12a3 ENSMUST00000034218 ENSMUSP00000034218 TRANSLATION protein_coding - CCDS57632.1 1 1002.0 0.0 19.5 1.1 1034.4 10.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000031766 Slc12a3 ENSMUST00000212915 - NO_TRANSLATION retained_intron ENSMUSG00000031766 Slc12a3 ENSMUST00000212041 - NO_TRANSLATION retained_intron ENSMUSG00000031766 Slc12a3 ENSMUST00000212632 - NO_TRANSLATION retained_intron ENSMUSG00000042269 Cibar2 ENSMUST00000153177 - NO_TRANSLATION retained_intron ENSMUSG00000042269 Cibar2 ENSMUST00000135567 ENSMUSP00000134033 TRANSLATION protein_coding stop - 5 121.0 0.0 2.0 0.0 76.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000042269 Cibar2 ENSMUST00000048786 ENSMUSP00000038825 TRANSLATION protein_coding - CCDS22717.1 5 292.0 0.0 5.35 2.2 212.1 0.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000042269 Cibar2 ENSMUST00000142478 - NO_TRANSLATION retained_intron ENSMUSG00000038173 Enpp6 ENSMUST00000140149 - NO_TRANSLATION retained_intron ENSMUSG00000038173 Enpp6 ENSMUST00000123066 ENSMUSP00000147811 TRANSLATION nonsense_mediated_decay - - 2 232.0 9.0 4.0 0.0 170.1 0.0 2,-2 0.002 5 -2.0 MINOR ENSMUSG00000038173 Enpp6 ENSMUST00000119686 ENSMUSP00000112633 TRANSLATION protein_coding - - 1 390.0 12.0 7.5 0.0 262.9 0.0 2,-2 0.1197 10 16.002 MINOR ENSMUSG00000038173 Enpp6 ENSMUST00000149593 ENSMUSP00000121470 TRANSLATION protein_coding start - 1 75.0 1.0 2.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038173 Enpp6 ENSMUST00000210466 - NO_TRANSLATION retained_intron ENSMUSG00000038173 Enpp6 ENSMUST00000039840 ENSMUSP00000044608 TRANSLATION protein_coding - CCDS40335.1 1 440.0 12.0 8.5 0.4 262.9 0.0 2,-2 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000045636 Mtus1 ENSMUST00000118835 ENSMUSP00000112626 TRANSLATION protein_coding - CCDS40328.1 1 1210.0 0.0 8.85 0.1 0.0 0.0 -4,-5 0.3502 28 6.0 MINOR ENSMUSG00000045636 Mtus1 ENSMUST00000131965 ENSMUSP00000121605 TRANSLATION protein_coding stop - 2 92.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0004 5 -2.0 MINOR ENSMUSG00000045636 Mtus1 ENSMUST00000145860 ENSMUSP00000119440 TRANSLATION protein_coding stop - 1 759.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0428 12 -2.0 MINOR ENSMUSG00000045636 Mtus1 ENSMUST00000051379 ENSMUSP00000053554 TRANSLATION protein_coding - CCDS40330.1 1 440.0 0.0 8.85 15.7 0.0 0.0 -4,0 1.0 14 10.0 PRINCIPAL:1 ENSMUSG00000045636 Mtus1 ENSMUST00000155055 ENSMUSP00000119163 TRANSLATION protein_coding stop - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0081 - -2.0 MINOR ENSMUSG00000045636 Mtus1 ENSMUST00000135194 - NO_TRANSLATION retained_intron ENSMUSG00000045636 Mtus1 ENSMUST00000143853 ENSMUSP00000116339 TRANSLATION protein_coding start/stop - 2 214.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0167 3 -2.0 MINOR ENSMUSG00000045636 Mtus1 ENSMUST00000093534 ENSMUSP00000091252 TRANSLATION protein_coding - CCDS40329.1 1 520.0 0.0 8.85 7.7 0.0 0.0 -4,-6 0.6532 16 7.824 MINOR ENSMUSG00000045636 Mtus1 ENSMUST00000155626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045636 Mtus1 ENSMUST00000117735 ENSMUSP00000113082 TRANSLATION protein_coding stop - 2 123.0 0.0 2.613 0.0 0.0 0.0 -4,-7 0.0048 6 -2.0 MINOR ENSMUSG00000045636 Mtus1 ENSMUST00000059115 ENSMUSP00000059503 TRANSLATION protein_coding - CCDS40328.1 5 1210.0 0.0 8.85 0.1 0.0 0.0 -4,-5 0.3502 28 6.0 MINOR ENSMUSG00000045636 Mtus1 ENSMUST00000127665 - NO_TRANSLATION retained_intron ENSMUSG00000045636 Mtus1 ENSMUST00000155174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045636 Mtus1 ENSMUST00000142936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031590 Frg1 ENSMUST00000033999 ENSMUSP00000033999 TRANSLATION protein_coding - CCDS22263.1 1 258.0 0.0 5.63 32.7 264.6 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000031590 Frg1 ENSMUST00000210873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038291 Snx25 ENSMUST00000144244 ENSMUSP00000148177 TRANSLATION protein_coding start/stop - 5 149.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000038291 Snx25 ENSMUST00000170416 ENSMUSP00000127640 TRANSLATION protein_coding - CCDS22287.2 5 840.0 0.0 4.12 9.3 320.4 0.0 -4,-5 1.0 13 14.94 PRINCIPAL:1 ENSMUSG00000038291 Snx25 ENSMUST00000110378 ENSMUSP00000106007 TRANSLATION protein_coding - - 5 986.0 0.0 4.12 0.4 321.4 0.0 -4,-7 0.2329 14 12.0 MINOR ENSMUSG00000038291 Snx25 ENSMUST00000176410 - NO_TRANSLATION retained_intron ENSMUSG00000038291 Snx25 ENSMUST00000177186 ENSMUSP00000134949 TRANSLATION protein_coding start - 3 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038291 Snx25 ENSMUST00000136097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038291 Snx25 ENSMUST00000150645 - NO_TRANSLATION retained_intron ENSMUSG00000038291 Snx25 ENSMUST00000041582 ENSMUSP00000035785 TRANSLATION protein_coding - CCDS22287.2 5 840.0 0.0 4.12 9.3 320.4 0.0 -4,-5 1.0 13 14.94 PRINCIPAL:1 ENSMUSG00000038291 Snx25 ENSMUST00000110377 ENSMUSP00000106006 TRANSLATION nonsense_mediated_decay - - 5 142.0 0.0 0.0 0.0 69.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000109718 Trim61 ENSMUST00000078409 ENSMUSP00000077513 TRANSLATION protein_coding - CCDS22332.1 1 461.0 8.0 1.52 0.0 148.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000109718 Trim61 ENSMUST00000211310 ENSMUSP00000147962 TRANSLATION protein_coding start - 5 102.0 3.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000791 Il12rb1 ENSMUST00000212146 ENSMUSP00000148314 TRANSLATION protein_coding stop - 3 114.0 0.0 1.298 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000791 Il12rb1 ENSMUST00000212251 - NO_TRANSLATION retained_intron ENSMUSG00000000791 Il12rb1 ENSMUST00000211936 - NO_TRANSLATION retained_intron ENSMUSG00000000791 Il12rb1 ENSMUST00000000808 ENSMUSP00000000808 TRANSLATION protein_coding - CCDS22382.1 1 738.0 0.0 2.863 0.1 48.7 0.0 0,-3 0.2743 - 7.25 ALTERNATIVE:2 ENSMUSG00000000791 Il12rb1 ENSMUST00000212826 - NO_TRANSLATION retained_intron ENSMUSG00000000791 Il12rb1 ENSMUST00000212657 ENSMUSP00000148279 TRANSLATION protein_coding - - 5 668.0 0.0 3.238 0.0 48.7 0.0 0,-3 0.8306 - 8.0 PRINCIPAL:2 ENSMUSG00000046691 Chtf8 ENSMUST00000177068 ENSMUSP00000135029 TRANSLATION protein_coding - CCDS57643.1 1 121.0 0.0 0.0 27.9 0.0 0.0 -4,-7 1.0 1 4.0 PRINCIPAL:1 ENSMUSG00000046691 Chtf8 ENSMUST00000176515 ENSMUSP00000135688 TRANSLATION protein_coding - - 2 102.0 0.0 0.0 0.9 0.0 0.0 -4,-5 0.0582 1 0.0 MINOR ENSMUSG00000046691 Chtf8 ENSMUST00000175940 ENSMUSP00000135077 TRANSLATION protein_coding - CCDS57643.1 1 121.0 0.0 0.0 27.9 0.0 0.0 -4,-7 1.0 1 4.0 PRINCIPAL:1 ENSMUSG00000046691 Chtf8 ENSMUST00000176090 ENSMUSP00000135221 TRANSLATION protein_coding - - 5 102.0 0.0 0.0 0.9 0.0 0.0 -4,-5 0.0582 1 0.0 MINOR ENSMUSG00000036913 Trim67 ENSMUST00000041106 ENSMUSP00000040601 TRANSLATION protein_coding - CCDS52704.1 1 768.0 19.0 5.8 0.8 144.0 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000036913 Trim67 ENSMUST00000211867 ENSMUSP00000148625 TRANSLATION nonsense_mediated_decay - CCDS52704.1 1 768.0 19.0 5.8 0.8 144.0 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000036913 Trim67 ENSMUST00000167588 ENSMUSP00000130343 TRANSLATION protein_coding - CCDS52704.1 5 768.0 19.0 5.8 0.8 144.0 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000031518 Spata4 ENSMUST00000033917 ENSMUSP00000033917 TRANSLATION protein_coding - CCDS22308.1 1 295.0 0.0 1.0 0.0 118.8 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000039775 Defb3 ENSMUST00000033852 ENSMUSP00000033852 TRANSLATION protein_coding - CCDS40258.1 1 63.0 0.0 1.0 1.1 49.3 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000003575 Crtc1 ENSMUST00000153632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003575 Crtc1 ENSMUST00000125273 - NO_TRANSLATION retained_intron ENSMUSG00000003575 Crtc1 ENSMUST00000076615 ENSMUSP00000075916 TRANSLATION protein_coding - CCDS40372.1 1 630.0 0.0 1.4 6.6 402.1 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000003575 Crtc1 ENSMUST00000125613 - NO_TRANSLATION retained_intron ENSMUSG00000003575 Crtc1 ENSMUST00000142769 - NO_TRANSLATION retained_intron ENSMUSG00000014846 Tppp3 ENSMUST00000177126 ENSMUSP00000135040 TRANSLATION protein_coding - CCDS22602.1 3 176.0 0.0 3.0 28.8 221.6 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000014846 Tppp3 ENSMUST00000176419 ENSMUSP00000134807 TRANSLATION protein_coding - CCDS22602.1 1 176.0 0.0 3.0 28.8 221.6 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000014846 Tppp3 ENSMUST00000014990 ENSMUSP00000014990 TRANSLATION protein_coding - CCDS22602.1 1 176.0 0.0 3.0 28.8 221.6 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000031876 Gm45711 ENSMUST00000162616 ENSMUSP00000124800 TRANSLATION nonsense_mediated_decay,RT - - 2 391.0 0.0 1.4 0.0 0.0 0.0 -4,-2 0.6972 - -2.0 PRINCIPAL:1 ENSMUSG00000005481 Ddx39a ENSMUST00000212949 ENSMUSP00000148329 TRANSLATION nonsense_mediated_decay - CCDS22460.1 1 427.0 12.0 8.6 32.9 214.8 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000005481 Ddx39a ENSMUST00000172396 ENSMUSP00000132222 TRANSLATION protein_coding - CCDS22460.1 1 427.0 12.0 8.6 32.9 214.8 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000005481 Ddx39a ENSMUST00000019576 ENSMUSP00000019576 TRANSLATION protein_coding - CCDS22460.1 1 427.0 12.0 8.6 32.9 214.8 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000005481 Ddx39a ENSMUST00000109810 ENSMUSP00000105435 TRANSLATION protein_coding - CCDS22460.1 5 427.0 12.0 8.6 32.9 214.8 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000005481 Ddx39a ENSMUST00000140521 ENSMUSP00000116101 TRANSLATION nonsense_mediated_decay - - 2 208.0 12.0 3.6 0.0 112.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005481 Ddx39a ENSMUST00000127505 - NO_TRANSLATION retained_intron ENSMUSG00000005481 Ddx39a ENSMUST00000138789 - NO_TRANSLATION retained_intron ENSMUSG00000031849 Comp ENSMUST00000213072 ENSMUSP00000148626 TRANSLATION nonsense_mediated_decay start - 3 81.0 0.0 1.25 0.0 61.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031849 Comp ENSMUST00000212439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031849 Comp ENSMUST00000003659 ENSMUSP00000003659 TRANSLATION protein_coding - CCDS22367.1 1 755.0 122.0 15.56 3.1 693.2 0.0 3,-2 1.0 16 19.0 PRINCIPAL:1 ENSMUSG00000031849 Comp ENSMUST00000212488 ENSMUSP00000148712 TRANSLATION protein_coding start - 2 109.0 6.0 2.0 0.0 171.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000058301 Upf1 ENSMUST00000075666 ENSMUSP00000075089 TRANSLATION protein_coding - CCDS52572.1 1 1124.0 25.0 16.62 7.6 551.8 0.0 -4,-5 1.0 43 19.47 MINOR ENSMUSG00000058301 Upf1 ENSMUST00000215817 ENSMUSP00000148927 TRANSLATION protein_coding - - 1 1113.0 25.0 16.95 10.3 551.8 0.0 -4,-5 0.9808 43 21.0 PRINCIPAL:1 ENSMUSG00000047390 Defb9 ENSMUST00000057076 ENSMUSP00000054085 TRANSLATION protein_coding - CCDS40286.1 1 67.0 0.0 1.0 0.1 43.1 0.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050914 Ankrd37 ENSMUST00000153674 ENSMUSP00000147774 TRANSLATION nonsense_mediated_decay start - 1 74.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000050914 Ankrd37 ENSMUST00000144525 - NO_TRANSLATION retained_intron ENSMUSG00000050914 Ankrd37 ENSMUST00000141334 - NO_TRANSLATION retained_intron ENSMUSG00000050914 Ankrd37 ENSMUST00000053558 ENSMUSP00000056828 TRANSLATION protein_coding - CCDS22285.1 1 159.0 0.0 3.264 8.1 41.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050914 Ankrd37 ENSMUST00000131008 - NO_TRANSLATION retained_intron ENSMUSG00000050914 Ankrd37 ENSMUST00000210971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031489 Adrb3 ENSMUST00000117565 ENSMUSP00000113732 TRANSLATION protein_coding - - 1 404.0 0.0 0.64 0.0 231.4 7.0 -3,-6 0.8234 6 6.0 ALTERNATIVE:2 ENSMUSG00000031489 Adrb3 ENSMUST00000121838 ENSMUSP00000113006 TRANSLATION protein_coding - CCDS22213.1 1 400.0 0.0 0.64 0.4 231.4 7.0 -3,-6 0.723 7 6.0 PRINCIPAL:3 ENSMUSG00000031489 Adrb3 ENSMUST00000209447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031489 Adrb3 ENSMUST00000081438 ENSMUSP00000080162 TRANSLATION protein_coding - CCDS22213.1 1 400.0 0.0 0.64 0.4 231.4 7.0 -3,-6 0.723 7 6.0 PRINCIPAL:3 ENSMUSG00000031489 Adrb3 ENSMUST00000211346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034845 Plvap ENSMUST00000048452 ENSMUSP00000035404 TRANSLATION protein_coding - CCDS22396.1 1 438.0 0.0 2.8 6.4 757.6 0.0 -4,-2 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000031864 Ints10 ENSMUST00000110242 ENSMUSP00000105871 TRANSLATION protein_coding - CCDS80885.1 1 736.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.3026 11 0.0 MINOR ENSMUSG00000031864 Ints10 ENSMUST00000140309 - NO_TRANSLATION retained_intron ENSMUSG00000031864 Ints10 ENSMUST00000034328 ENSMUSP00000034328 TRANSLATION protein_coding - CCDS22342.1 1 710.0 0.0 0.0 25.7 0.0 0.0 -4,-5 1.0 12 4.0 PRINCIPAL:4 ENSMUSG00000031864 Ints10 ENSMUST00000070713 ENSMUSP00000069908 TRANSLATION protein_coding - CCDS80886.1 1 736.0 0.0 0.0 25.7 0.0 0.0 -4,-5 0.9626 12 4.0 ALTERNATIVE:1 ENSMUSG00000031864 Ints10 ENSMUST00000145140 - NO_TRANSLATION retained_intron ENSMUSG00000031864 Ints10 ENSMUST00000146322 - NO_TRANSLATION retained_intron ENSMUSG00000031864 Ints10 ENSMUST00000110241 ENSMUSP00000105870 TRANSLATION protein_coding - - 1 659.0 0.0 0.0 1.0 0.0 0.0 -4,-5 0.1055 12 0.0 MINOR ENSMUSG00000031864 Ints10 ENSMUST00000147072 ENSMUSP00000118390 TRANSLATION protein_coding start - 3 179.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0122 - -2.0 MINOR ENSMUSG00000031864 Ints10 ENSMUST00000212064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031954 Cfdp1 ENSMUST00000034432 ENSMUSP00000034432 TRANSLATION protein_coding - CCDS22680.1 1 295.0 0.0 1.2 7.9 105.5 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000040459 Arglu1 ENSMUST00000048545 ENSMUSP00000039493 TRANSLATION protein_coding - CCDS40215.1 2 271.0 0.0 2.75 15.5 175.3 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040459 Arglu1 ENSMUST00000207817 ENSMUSP00000146939 TRANSLATION nonsense_mediated_decay start - 5 215.0 0.0 1.0 0.0 73.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000040459 Arglu1 ENSMUST00000208252 - NO_TRANSLATION retained_intron ENSMUSG00000040459 Arglu1 ENSMUST00000207070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089665 Fcor ENSMUST00000159364 ENSMUSP00000146366 TRANSLATION protein_coding - - 1 106.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5648 - 0.0 PRINCIPAL:1 ENSMUSG00000052819 Best2 ENSMUST00000059072 ENSMUSP00000053408 TRANSLATION protein_coding - CCDS52621.1 1 508.0 0.0 7.5 6.7 374.2 3.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000052819 Best2 ENSMUST00000209322 ENSMUSP00000147580 TRANSLATION protein_coding - CCDS52621.1 1 508.0 0.0 7.5 6.7 374.2 3.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000052819 Best2 ENSMUST00000209421 ENSMUSP00000147837 TRANSLATION protein_coding - CCDS52621.1 1 508.0 0.0 7.5 6.7 374.2 3.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050079 Rspry1 ENSMUST00000121101 ENSMUSP00000112482 TRANSLATION protein_coding - - 1 117.0 0.0 0.0 2.4 0.0 0.0 1,-4 0.0529 2 0.24 MINOR ENSMUSG00000050079 Rspry1 ENSMUST00000211983 ENSMUSP00000148737 TRANSLATION protein_coding - CCDS22544.1 1 576.0 8.0 12.11 24.2 102.9 0.0 1,-4 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000050079 Rspry1 ENSMUST00000060389 ENSMUSP00000057275 TRANSLATION protein_coding - CCDS22544.1 1 576.0 8.0 12.11 24.2 102.9 0.0 1,-4 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000050079 Rspry1 ENSMUST00000154035 - NO_TRANSLATION retained_intron ENSMUSG00000050079 Rspry1 ENSMUST00000212729 ENSMUSP00000148724 TRANSLATION protein_coding - - 1 452.0 8.0 11.58 1.0 102.9 0.0 -4,-5 0.1116 6 16.938 MINOR ENSMUSG00000050079 Rspry1 ENSMUST00000211941 - NO_TRANSLATION retained_intron ENSMUSG00000050079 Rspry1 ENSMUST00000212014 - NO_TRANSLATION retained_intron ENSMUSG00000031789 Cngb1 ENSMUST00000156514 ENSMUSP00000148290 TRANSLATION nonsense_mediated_decay - - 1 227.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.001 - -2.0 MINOR ENSMUSG00000031789 Cngb1 ENSMUST00000184103 ENSMUSP00000139246 TRANSLATION protein_coding start - 3 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031789 Cngb1 ENSMUST00000120044 ENSMUSP00000113750 TRANSLATION protein_coding - - 5 866.0 13.0 9.75 0.3 60.9 1.0 -4,-5 0.111 6 14.0 ALTERNATIVE:2 ENSMUSG00000031789 Cngb1 ENSMUST00000093268 ENSMUSP00000090956 TRANSLATION protein_coding - CCDS52641.1 1 326.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0434 1 0.0 MINOR ENSMUSG00000031789 Cngb1 ENSMUST00000212237 ENSMUSP00000148367 TRANSLATION protein_coding start - 5 207.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.001 1 -2.0 MINOR ENSMUSG00000031789 Cngb1 ENSMUST00000119870 ENSMUSP00000113827 TRANSLATION protein_coding - CCDS72151.1 1 1325.0 13.0 9.75 0.0 60.9 1.0 -4,-6 1.0 7 14.0 PRINCIPAL:2 ENSMUSG00000031789 Cngb1 ENSMUST00000184621 - NO_TRANSLATION retained_intron ENSMUSG00000031789 Cngb1 ENSMUST00000133716 ENSMUSP00000148564 TRANSLATION nonsense_mediated_decay - - 5 193.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031789 Cngb1 ENSMUST00000134207 ENSMUSP00000148391 TRANSLATION nonsense_mediated_decay - - 5 228.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.001 - -2.0 MINOR ENSMUSG00000031789 Cngb1 ENSMUST00000121162 ENSMUSP00000112437 TRANSLATION protein_coding - - 5 866.0 13.0 9.75 0.3 60.9 1.0 -4,-5 0.111 6 14.0 ALTERNATIVE:2 ENSMUSG00000044287 Nrn1l ENSMUST00000060167 ENSMUSP00000056940 TRANSLATION protein_coding - CCDS22618.1 1 162.0 0.0 2.2 0.0 87.9 0.0 1,-3 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000044287 Nrn1l ENSMUST00000118920 ENSMUSP00000113445 TRANSLATION protein_coding - CCDS80924.1 1 161.0 0.0 2.2 0.0 87.9 0.0 1,-3 0.6407 1 6.0 ALTERNATIVE:2 ENSMUSG00000031821 Gins2 ENSMUST00000146526 - NO_TRANSLATION retained_intron ENSMUSG00000031821 Gins2 ENSMUST00000126094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031821 Gins2 ENSMUST00000034278 ENSMUSP00000034278 TRANSLATION protein_coding - CCDS40496.1 1 185.0 0.0 5.0 30.2 82.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031821 Gins2 ENSMUST00000155609 - NO_TRANSLATION retained_intron ENSMUSG00000109850 Gm45692 ENSMUST00000131138 ENSMUSP00000115452 TRANSLATION protein_coding,RT stop - 5 150.0 5.0 0.675 0.0 0.0 0.0 -4,-7 0.655 - -2.0 PRINCIPAL:1 ENSMUSG00000035559 Mpv17l2 ENSMUST00000038626 ENSMUSP00000037929 TRANSLATION protein_coding - CCDS22380.1 1 200.0 0.0 4.55 0.4 102.6 3.0 -2,1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000035559 Mpv17l2 ENSMUST00000212385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035559 Mpv17l2 ENSMUST00000213010 - NO_TRANSLATION retained_intron ENSMUSG00000035559 Mpv17l2 ENSMUST00000212617 ENSMUSP00000148307 TRANSLATION nonsense_mediated_decay start - 1 36.0 0.0 1.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031825 Crispld2 ENSMUST00000144801 - NO_TRANSLATION retained_intron ENSMUSG00000031825 Crispld2 ENSMUST00000108972 ENSMUSP00000104600 TRANSLATION protein_coding - CCDS22714.1 1 494.0 2.0 5.75 11.3 250.1 0.0 3,-2 0.992 6 12.712 ALTERNATIVE:1 ENSMUSG00000031825 Crispld2 ENSMUST00000132583 ENSMUSP00000122962 TRANSLATION protein_coding - CCDS22714.1 1 494.0 2.0 5.75 11.3 250.1 0.0 3,-2 0.992 6 12.712 ALTERNATIVE:1 ENSMUSG00000031825 Crispld2 ENSMUST00000034282 ENSMUSP00000034282 TRANSLATION protein_coding - CCDS80939.1 1 495.0 2.0 5.75 12.4 250.1 0.0 3,-2 1.0 6 13.0 PRINCIPAL:4 ENSMUSG00000031825 Crispld2 ENSMUST00000151629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062991 Nrg1 ENSMUST00000238791 ENSMUSP00000158879 TRANSLATION protein_coding - - - 604.0 4.0 3.375 0.0 702.2 5.0 -4,-5 0.1646 5 11.34 ALTERNATIVE:2 ENSMUSG00000062991 Nrg1 ENSMUST00000238812 ENSMUSP00000159096 TRANSLATION protein_coding - - - 296.0 4.0 1.962 2.8 21.6 1.0 -4,-5 0.0969 - 7.626 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000239080 ENSMUSP00000159015 TRANSLATION protein_coding - - - 247.0 4.0 3.46 0.0 75.7 0.0 -4,-5 0.0036 1 10.65 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000209022 ENSMUSP00000146842 TRANSLATION protein_coding stop - 5 472.0 4.0 3.54 0.0 73.1 0.0 -2,1 0.0291 1 -2.0 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000208206 - NO_TRANSLATION retained_intron ENSMUSG00000062991 Nrg1 ENSMUST00000239051 ENSMUSP00000159025 TRANSLATION protein_coding start - - 324.0 4.0 3.672 0.0 73.1 0.0 -4,-5 0.03 1 -2.0 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000207470 ENSMUSP00000146456 TRANSLATION protein_coding - - 1 645.0 4.0 3.705 1.1 706.3 5.0 -4,-5 0.3202 5 12.03 ALTERNATIVE:2 ENSMUSG00000062991 Nrg1 ENSMUST00000239055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062991 Nrg1 ENSMUST00000238909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062991 Nrg1 ENSMUST00000238879 ENSMUSP00000159099 TRANSLATION protein_coding - - - 420.0 4.0 3.372 0.0 73.1 0.0 -2,1 0.0013 1 10.476 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000073884 ENSMUSP00000073546 TRANSLATION protein_coding - CCDS40315.1 1 700.0 4.0 1.995 11.0 654.8 6.0 -4,-5 1.0 4 11.008 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000238826 ENSMUSP00000159036 TRANSLATION protein_coding - - - 241.0 4.0 3.672 1.1 73.1 0.0 -4,-5 0.0909 1 11.106 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000238824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062991 Nrg1 ENSMUST00000238958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062991 Nrg1 ENSMUST00000208205 ENSMUSP00000147156 TRANSLATION protein_coding - - 5 640.0 4.0 3.46 2.3 708.9 5.0 -4,-5 0.4545 4 11.898 ALTERNATIVE:2 ENSMUSG00000062991 Nrg1 ENSMUST00000207584 ENSMUSP00000158871 TRANSLATION protein_coding - - 1 302.0 4.0 1.75 0.0 24.2 1.0 -4,-5 0.0037 - 6.66 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000207678 ENSMUSP00000159071 TRANSLATION protein_coding - - 1 285.0 4.0 2.05 0.0 397.6 5.0 -4,-7 0.0038 1 7.26 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000238816 ENSMUSP00000158948 TRANSLATION protein_coding - - - 485.0 4.0 2.79 0.0 447.4 5.0 -4,-5 0.0046 2 9.312 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000208355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062991 Nrg1 ENSMUST00000208488 ENSMUSP00000147121 TRANSLATION protein_coding - - 5 663.0 4.0 2.79 0.0 706.3 5.0 -4,-5 0.0935 4 10.17 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000239032 ENSMUSP00000158913 TRANSLATION protein_coding start - - 206.0 4.0 3.372 0.0 73.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000239067 ENSMUSP00000158989 TRANSLATION protein_coding - - - 603.0 4.0 3.24 1.1 706.3 5.0 -4,-5 0.1606 5 11.1 ALTERNATIVE:2 ENSMUSG00000062991 Nrg1 ENSMUST00000208598 ENSMUSP00000146478 TRANSLATION protein_coding - - 5 423.0 4.0 3.46 0.0 449.1 5.0 -4,-5 0.0122 2 10.65 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000209107 ENSMUSP00000146617 TRANSLATION protein_coding - - 5 858.0 4.0 3.705 0.0 706.3 5.0 -2,1 0.1935 5 12.0 ALTERNATIVE:2 ENSMUSG00000062991 Nrg1 ENSMUST00000239151 ENSMUSP00000158859 TRANSLATION protein_coding - - - 433.0 4.0 3.405 0.0 447.4 5.0 -4,-5 0.0049 3 10.542 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000208497 ENSMUSP00000146816 TRANSLATION protein_coding - - 1 483.0 4.0 1.995 1.7 395.0 6.0 -4,-5 0.0634 2 7.362 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000208820 - NO_TRANSLATION retained_intron ENSMUSG00000062991 Nrg1 ENSMUST00000208819 ENSMUSP00000146403 TRANSLATION protein_coding - - 5 459.0 4.0 3.54 1.1 447.4 5.0 -4,-5 0.0584 3 10.842 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000208335 ENSMUSP00000146375 TRANSLATION protein_coding start/stop - 5 300.0 4.0 1.75 0.0 398.5 5.0 -4,-7 0.0052 1 -2.0 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000238842 ENSMUSP00000159112 TRANSLATION protein_coding - - - 695.0 4.0 1.75 8.9 657.4 6.0 -4,-5 0.7944 3 9.886 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000208617 ENSMUSP00000146857 TRANSLATION protein_coding - - 5 462.0 4.0 3.46 1.1 450.0 5.0 -4,-5 0.0432 2 10.68 MINOR ENSMUSG00000062991 Nrg1 ENSMUST00000207417 ENSMUSP00000146905 TRANSLATION protein_coding - - 5 637.0 4.0 3.54 2.3 706.3 5.0 -4,-5 0.4756 5 12.06 PRINCIPAL:4 ENSMUSG00000062991 Nrg1 ENSMUST00000208931 ENSMUSP00000146507 TRANSLATION protein_coding start/stop - 5 135.0 4.0 1.83 0.0 21.6 0.0 -4,-7 0.0007 - -2.0 MINOR ENSMUSG00000017478 Zc3h18 ENSMUST00000177386 - NO_TRANSLATION retained_intron ENSMUSG00000017478 Zc3h18 ENSMUST00000175819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017478 Zc3h18 ENSMUST00000177195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017478 Zc3h18 ENSMUST00000175798 - NO_TRANSLATION retained_intron ENSMUSG00000017478 Zc3h18 ENSMUST00000177123 - NO_TRANSLATION retained_intron ENSMUSG00000017478 Zc3h18 ENSMUST00000017622 ENSMUSP00000017622 TRANSLATION protein_coding - CCDS22735.1 1 972.0 4.0 0.0 3.5 0.0 0.0 -4,-5 1.0 9 5.0 PRINCIPAL:2 ENSMUSG00000017478 Zc3h18 ENSMUST00000177049 ENSMUSP00000135014 TRANSLATION protein_coding start - 2 241.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0282 2 -2.0 MINOR ENSMUSG00000017478 Zc3h18 ENSMUST00000093073 ENSMUSP00000090761 TRANSLATION protein_coding - CCDS22736.1 1 948.0 4.0 0.0 2.0 0.0 0.0 -4,-5 0.726 8 4.4 ALTERNATIVE:2 ENSMUSG00000017478 Zc3h18 ENSMUST00000176629 ENSMUSP00000134743 TRANSLATION protein_coding - CCDS80941.1 1 950.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.3102 9 4.0 ALTERNATIVE:2 ENSMUSG00000017478 Zc3h18 ENSMUST00000176699 ENSMUSP00000135438 TRANSLATION protein_coding stop - 2 104.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0138 1 -2.0 MINOR ENSMUSG00000031622 Sin3b ENSMUST00000212256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031622 Sin3b ENSMUST00000212096 ENSMUSP00000148599 TRANSLATION protein_coding stop - 3 207.0 0.0 3.0 0.0 62.6 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000031622 Sin3b ENSMUST00000212435 - NO_TRANSLATION retained_intron ENSMUSG00000031622 Sin3b ENSMUST00000213079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031622 Sin3b ENSMUST00000212677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031622 Sin3b ENSMUST00000004494 ENSMUSP00000004494 TRANSLATION protein_coding - CCDS52599.1 1 1098.0 0.0 7.88 0.4 578.8 0.0 -4,-7 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000031622 Sin3b ENSMUST00000109950 ENSMUSP00000105576 TRANSLATION protein_coding - CCDS52598.1 1 293.0 0.0 4.08 0.4 125.9 0.0 -4,-7 0.0099 4 0.0 MINOR ENSMUSG00000031622 Sin3b ENSMUST00000212095 ENSMUSP00000148407 TRANSLATION protein_coding - - 1 302.0 0.0 4.08 0.0 125.9 0.0 -4,-7 0.0013 4 0.0 MINOR ENSMUSG00000001065 Zfp276 ENSMUST00000001092 ENSMUSP00000001092 TRANSLATION protein_coding - CCDS52699.1 1 614.0 24.0 4.1 3.1 85.0 0.0 -4,-2 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000001065 Zfp276 ENSMUST00000154450 ENSMUSP00000119771 TRANSLATION protein_coding stop - 3 233.0 6.0 0.95 0.0 42.1 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000001065 Zfp276 ENSMUST00000150356 - NO_TRANSLATION retained_intron ENSMUSG00000001065 Zfp276 ENSMUST00000211828 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001065 Zfp276 ENSMUST00000146158 - NO_TRANSLATION retained_intron ENSMUSG00000001065 Zfp276 ENSMUST00000147312 - NO_TRANSLATION retained_intron ENSMUSG00000001065 Zfp276 ENSMUST00000156896 - NO_TRANSLATION retained_intron ENSMUSG00000001065 Zfp276 ENSMUST00000130333 - NO_TRANSLATION retained_intron ENSMUSG00000037437 Adam32 ENSMUST00000156719 - NO_TRANSLATION retained_intron ENSMUSG00000037437 Adam32 ENSMUST00000140573 ENSMUSP00000133843 TRANSLATION protein_coding start - 3 74.0 5.0 0.9 0.0 30.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037437 Adam32 ENSMUST00000173069 ENSMUSP00000133631 TRANSLATION protein_coding start - 5 80.0 0.0 0.425 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037437 Adam32 ENSMUST00000173559 ENSMUSP00000134478 TRANSLATION nonsense_mediated_decay start - 3 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037437 Adam32 ENSMUST00000133088 - NO_TRANSLATION retained_intron ENSMUSG00000037437 Adam32 ENSMUST00000119720 ENSMUSP00000113076 TRANSLATION protein_coding - CCDS80867.1 1 677.0 14.0 5.985 0.0 471.8 0.0 3,-2 0.2266 8 16.398 MINOR ENSMUSG00000037437 Adam32 ENSMUST00000174059 ENSMUSP00000134680 TRANSLATION nonsense_mediated_decay start - 5 173.0 0.0 0.0 0.0 91.1 0.0 3,-2 0.0006 3 -2.0 MINOR ENSMUSG00000037437 Adam32 ENSMUST00000121438 ENSMUSP00000113627 TRANSLATION protein_coding - CCDS40300.2 1 754.0 14.0 6.785 0.0 471.8 0.0 3,-2 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000007610 Gtpbp3 ENSMUST00000095259 ENSMUSP00000092892 TRANSLATION nonsense_mediated_decay - - 1 241.0 0.0 1.95 0.0 122.2 0.0 0,0 0.0 3 -2.0 MINOR ENSMUSG00000007610 Gtpbp3 ENSMUST00000127741 ENSMUSP00000123082 TRANSLATION nonsense_mediated_decay - - 1 228.0 0.0 1.95 0.0 122.2 0.0 0,0 0.0 3 -2.0 MINOR ENSMUSG00000007610 Gtpbp3 ENSMUST00000132907 - NO_TRANSLATION retained_intron ENSMUSG00000007610 Gtpbp3 ENSMUST00000124349 - NO_TRANSLATION retained_intron ENSMUSG00000007610 Gtpbp3 ENSMUST00000007754 ENSMUSP00000007754 TRANSLATION protein_coding - CCDS40384.1 1 492.0 13.0 4.43 4.3 191.3 0.0 0,0 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000007610 Gtpbp3 ENSMUST00000146551 - NO_TRANSLATION retained_intron ENSMUSG00000007610 Gtpbp3 ENSMUST00000150969 ENSMUSP00000114193 TRANSLATION nonsense_mediated_decay - CCDS40384.1 1 492.0 13.0 4.43 4.3 191.3 0.0 0,0 1.0 - -2.0 MINOR ENSMUSG00000002885 Adgre5 ENSMUST00000109802 ENSMUSP00000105427 TRANSLATION protein_coding - CCDS52611.1 5 773.0 16.0 6.969 0.0 410.6 9.0 2,-2 0.4786 20 16.002 MINOR ENSMUSG00000002885 Adgre5 ENSMUST00000166939 ENSMUSP00000128220 TRANSLATION protein_coding - CCDS52612.1 1 722.0 13.0 5.969 0.0 356.2 9.0 2,-2 0.1238 18 8.736 MINOR ENSMUSG00000002885 Adgre5 ENSMUST00000002964 ENSMUSP00000002964 TRANSLATION protein_coding - CCDS52610.1 1 724.0 13.0 5.969 0.0 356.2 9.0 2,-2 0.1294 18 8.736 MINOR ENSMUSG00000002885 Adgre5 ENSMUST00000154075 - NO_TRANSLATION retained_intron ENSMUSG00000002885 Adgre5 ENSMUST00000075843 ENSMUSP00000075240 TRANSLATION protein_coding - CCDS22461.1 1 818.0 19.0 6.969 0.0 410.6 9.0 2,-2 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000002885 Adgre5 ENSMUST00000140606 - NO_TRANSLATION retained_intron ENSMUSG00000002885 Adgre5 ENSMUST00000149368 ENSMUSP00000138393 TRANSLATION nonsense_mediated_decay - - 3 47.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0 - -2.0 MINOR ENSMUSG00000002885 Adgre5 ENSMUST00000139797 - NO_TRANSLATION retained_intron ENSMUSG00000044600 Smim7 ENSMUST00000058733 ENSMUSP00000059943 TRANSLATION protein_coding - - 2 63.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0162 - 0.0 MINOR ENSMUSG00000044600 Smim7 ENSMUST00000167290 ENSMUSP00000127441 TRANSLATION protein_coding - CCDS40390.1 1 75.0 0.0 0.0 32.9 0.0 1.0 -2,-5 1.0 - 4.0 PRINCIPAL:1 ENSMUSG00000044600 Smim7 ENSMUST00000163745 - NO_TRANSLATION retained_intron ENSMUSG00000038000 Acd ENSMUST00000212687 - NO_TRANSLATION retained_intron ENSMUSG00000038000 Acd ENSMUST00000212650 ENSMUSP00000148510 TRANSLATION nonsense_mediated_decay - - 5 75.0 0.0 1.332 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038000 Acd ENSMUST00000212642 ENSMUSP00000148663 TRANSLATION nonsense_mediated_decay - - 1 104.0 0.0 1.932 0.0 41.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038000 Acd ENSMUST00000042608 ENSMUSP00000048180 TRANSLATION protein_coding - CCDS22608.1 1 416.0 0.0 5.83 0.0 75.4 0.0 -4,-6 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000038000 Acd ENSMUST00000211870 ENSMUSP00000148285 TRANSLATION nonsense_mediated_decay - - 1 136.0 0.0 3.63 0.0 75.4 0.0 -4,-6 0.003 4 -2.0 MINOR ENSMUSG00000054764 Mtnr1a ENSMUST00000067984 ENSMUSP00000069872 TRANSLATION protein_coding - CCDS22273.1 1 353.0 0.0 3.33 14.7 169.7 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000054764 Mtnr1a ENSMUST00000130141 ENSMUSP00000115764 TRANSLATION protein_coding start/stop - 1 92.0 0.0 1.16 0.0 35.3 1.0 0,-4 0.0018 - -2.0 MINOR ENSMUSG00000054764 Mtnr1a ENSMUST00000209488 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031482 Slc25a15 ENSMUST00000210020 - NO_TRANSLATION retained_intron ENSMUSG00000031482 Slc25a15 ENSMUST00000033871 ENSMUSP00000033871 TRANSLATION protein_coding - CCDS22175.1 1 301.0 0.0 5.3 35.8 203.0 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000071103 1700029J07Rik ENSMUST00000239252 ENSMUSP00000159248 TRANSLATION nonsense_mediated_decay - - - 119.0 0.0 0.0 0.0 129.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000071103 1700029J07Rik ENSMUST00000098786 ENSMUSP00000096383 TRANSLATION protein_coding - CCDS22283.1 1 316.0 0.0 0.0 0.4 369.4 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000071103 1700029J07Rik ENSMUST00000095323 ENSMUSP00000092961 TRANSLATION protein_coding - CCDS22283.1 1 316.0 0.0 0.0 0.4 369.4 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000031779 Ccl22 ENSMUST00000156137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031779 Ccl22 ENSMUST00000034231 ENSMUSP00000034231 TRANSLATION protein_coding - CCDS40441.1 1 92.0 0.0 1.9 8.1 64.7 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048400 Prss54 ENSMUST00000213096 ENSMUSP00000148608 TRANSLATION protein_coding - - 5 383.0 0.0 1.4 0.1 90.9 0.0 2,-2 0.5317 2 8.0 ALTERNATIVE:2 ENSMUSG00000048400 Prss54 ENSMUST00000180075 ENSMUSP00000137577 TRANSLATION protein_coding - - 5 383.0 0.0 1.4 0.1 90.9 0.0 2,-2 0.5317 2 8.0 ALTERNATIVE:2 ENSMUSG00000048400 Prss54 ENSMUST00000212513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048400 Prss54 ENSMUST00000052690 ENSMUSP00000058859 TRANSLATION protein_coding - CCDS80916.1 1 383.0 0.0 1.4 0.1 91.7 0.0 2,-2 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000048400 Prss54 ENSMUST00000212368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040028 Elavl1 ENSMUST00000207615 - NO_TRANSLATION retained_intron ENSMUSG00000040028 Elavl1 ENSMUST00000098950 ENSMUSP00000096549 TRANSLATION protein_coding - CCDS22084.1 1 326.0 0.0 5.0 28.2 202.5 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000040028 Elavl1 ENSMUST00000208987 - NO_TRANSLATION retained_intron ENSMUSG00000040028 Elavl1 ENSMUST00000209010 ENSMUSP00000146866 TRANSLATION protein_coding - CCDS22084.1 5 326.0 0.0 5.0 28.2 202.5 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000038497 Tmco3 ENSMUST00000045229 ENSMUSP00000040347 TRANSLATION protein_coding - CCDS40231.1 1 678.0 0.0 1.186 14.6 240.3 10.0 3,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038497 Tmco3 ENSMUST00000210750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038497 Tmco3 ENSMUST00000210402 - NO_TRANSLATION retained_intron ENSMUSG00000038497 Tmco3 ENSMUST00000211645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038497 Tmco3 ENSMUST00000211402 - NO_TRANSLATION retained_intron ENSMUSG00000038497 Tmco3 ENSMUST00000210063 - NO_TRANSLATION retained_intron ENSMUSG00000038497 Tmco3 ENSMUST00000210762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038497 Tmco3 ENSMUST00000210600 ENSMUSP00000148167 TRANSLATION protein_coding start/stop - 5 237.0 0.0 0.198 0.0 52.6 2.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000038497 Tmco3 ENSMUST00000211517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061104 Sap18b ENSMUST00000074053 ENSMUSP00000073697 TRANSLATION protein_coding - CCDS52642.1 - 172.0 0.0 1.0 10.7 146.9 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078964 Ces1b ENSMUST00000109582 ENSMUSP00000105210 TRANSLATION protein_coding - CCDS40431.1 5 567.0 7.0 11.15 1.5 537.7 0.0 2,-2 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000070047 Fat1 ENSMUST00000189367 - NO_TRANSLATION retained_intron ENSMUSG00000070047 Fat1 ENSMUST00000189017 ENSMUSP00000140765 TRANSLATION protein_coding - - 5 4602.0 260.0 11.01 6.0 1753.2 0.0 3,-2 0.8002 56 19.668 MINOR ENSMUSG00000070047 Fat1 ENSMUST00000098796 ENSMUSP00000096394 TRANSLATION protein_coding - CCDS52547.1 5 4590.0 260.0 11.01 10.0 1753.2 0.0 3,-2 1.0 56 21.0 PRINCIPAL:1 ENSMUSG00000070047 Fat1 ENSMUST00000191428 ENSMUSP00000140596 TRANSLATION protein_coding - CCDS52547.1 5 4590.0 260.0 11.01 10.0 1753.2 0.0 3,-2 1.0 56 21.0 PRINCIPAL:1 ENSMUSG00000070047 Fat1 ENSMUST00000186342 ENSMUSP00000139921 TRANSLATION nonsense_mediated_decay start - 1 159.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000070047 Fat1 ENSMUST00000215588 ENSMUSP00000149194 TRANSLATION protein_coding - - 5 4645.0 260.0 11.01 3.3 1749.0 0.0 3,-2 0.3992 56 18.516 MINOR ENSMUSG00000079116 Defa41 ENSMUST00000110754 ENSMUSP00000106382 TRANSLATION protein_coding - CCDS52506.1 5 93.0 0.0 1.0 0.1 100.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000002346 Slc25a42 ENSMUST00000134596 - NO_TRANSLATION retained_intron ENSMUSG00000002346 Slc25a42 ENSMUST00000150706 - NO_TRANSLATION retained_intron ENSMUSG00000002346 Slc25a42 ENSMUST00000110127 ENSMUSP00000105754 TRANSLATION protein_coding - CCDS40370.1 5 318.0 17.0 5.705 12.4 232.6 0.0 -4,-6 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000002346 Slc25a42 ENSMUST00000139333 - NO_TRANSLATION retained_intron ENSMUSG00000046589 Lrrc8e ENSMUST00000053035 ENSMUSP00000052055 TRANSLATION protein_coding - CCDS22079.1 1 795.0 0.0 1.62 11.8 502.8 3.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000046589 Lrrc8e ENSMUST00000207770 ENSMUSP00000146637 TRANSLATION protein_coding stop - 3 64.0 0.0 1.3 0.0 103.3 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000053687 Dpep2 ENSMUST00000149057 - NO_TRANSLATION retained_intron ENSMUSG00000053687 Dpep2 ENSMUST00000117555 ENSMUSP00000113877 TRANSLATION protein_coding - CCDS80925.1 1 385.0 5.0 8.05 1.1 353.7 0.0 -4,-7 0.1133 - 15.778 MINOR ENSMUSG00000053687 Dpep2 ENSMUST00000034373 ENSMUSP00000034373 TRANSLATION protein_coding - CCDS80926.1 1 478.0 7.0 8.25 0.1 372.1 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000053687 Dpep2 ENSMUST00000150001 - NO_TRANSLATION retained_intron ENSMUSG00000053695 Defb37 ENSMUST00000066282 ENSMUSP00000067193 TRANSLATION protein_coding - CCDS40247.1 1 62.0 0.0 1.0 0.1 46.4 0.0 0,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031901 Dus2 ENSMUST00000144904 - NO_TRANSLATION retained_intron ENSMUSG00000031901 Dus2 ENSMUST00000142898 ENSMUSP00000120375 TRANSLATION protein_coding stop - 5 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0299 - -2.0 MINOR ENSMUSG00000031901 Dus2 ENSMUST00000034375 ENSMUSP00000034375 TRANSLATION protein_coding - CCDS22627.1 1 493.0 21.0 11.45 10.0 204.4 0.0 -4,-7 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000031901 Dus2 ENSMUST00000141374 - NO_TRANSLATION retained_intron ENSMUSG00000031901 Dus2 ENSMUST00000138524 - NO_TRANSLATION retained_intron ENSMUSG00000031901 Dus2 ENSMUST00000119736 ENSMUSP00000113781 TRANSLATION nonsense_mediated_decay - - 1 90.0 5.0 2.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031450 Grk1 ENSMUST00000211027 - NO_TRANSLATION retained_intron ENSMUSG00000031450 Grk1 ENSMUST00000033827 ENSMUSP00000033827 TRANSLATION protein_coding - CCDS22112.1 1 564.0 18.0 6.75 19.5 285.1 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000031450 Grk1 ENSMUST00000209909 ENSMUSP00000147484 TRANSLATION protein_coding - - 5 564.0 18.0 6.75 19.5 285.1 0.0 -4,-5 0.875 - 22.0 PRINCIPAL:1 ENSMUSG00000074063 Osgin1 ENSMUST00000145604 - NO_TRANSLATION retained_intron ENSMUSG00000074063 Osgin1 ENSMUST00000152420 ENSMUSP00000114467 TRANSLATION protein_coding - CCDS22704.1 1 478.0 24.0 0.08 10.0 0.0 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074063 Osgin1 ENSMUST00000212112 ENSMUSP00000148734 TRANSLATION protein_coding stop - 3 67.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0084 - -2.0 MINOR ENSMUSG00000074063 Osgin1 ENSMUST00000126414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074063 Osgin1 ENSMUST00000144381 - NO_TRANSLATION retained_intron ENSMUSG00000074063 Osgin1 ENSMUST00000131448 ENSMUSP00000120477 TRANSLATION protein_coding stop - 3 122.0 7.0 0.0 0.0 0.0 0.0 -4,-6 0.0098 - -2.0 MINOR ENSMUSG00000074063 Osgin1 ENSMUST00000098365 ENSMUSP00000095968 TRANSLATION protein_coding - - 1 172.0 7.0 0.0 0.0 0.0 0.0 -4,-6 0.0109 - 0.0 MINOR ENSMUSG00000043251 Exoc3l ENSMUST00000212974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043251 Exoc3l ENSMUST00000212138 - NO_TRANSLATION retained_intron ENSMUSG00000043251 Exoc3l ENSMUST00000057855 ENSMUSP00000053766 TRANSLATION protein_coding - CCDS22597.1 1 739.0 0.0 5.565 5.9 380.3 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000043251 Exoc3l ENSMUST00000212261 - NO_TRANSLATION retained_intron ENSMUSG00000043251 Exoc3l ENSMUST00000212777 ENSMUSP00000148327 TRANSLATION nonsense_mediated_decay - - 1 39.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000043251 Exoc3l ENSMUST00000212215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043251 Exoc3l ENSMUST00000212359 - NO_TRANSLATION retained_intron ENSMUSG00000031740 Mmp2 ENSMUST00000211308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031740 Mmp2 ENSMUST00000211691 - NO_TRANSLATION retained_intron ENSMUSG00000031740 Mmp2 ENSMUST00000034187 ENSMUSP00000034187 TRANSLATION protein_coding - CCDS22523.1 1 662.0 30.0 12.8 9.9 602.8 0.0 4,-1 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000031740 Mmp2 ENSMUST00000211567 ENSMUSP00000147838 TRANSLATION protein_coding start - 5 126.0 2.0 3.0 0.0 113.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000063932 Poteg ENSMUST00000211657 - NO_TRANSLATION retained_intron ENSMUSG00000063932 Poteg ENSMUST00000081321 ENSMUSP00000080069 TRANSLATION protein_coding - CCDS52535.1 1 473.0 0.0 5.9 0.0 91.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071165 Gm6040 ENSMUST00000095430 ENSMUSP00000093080 TRANSLATION protein_coding - CCDS40262.1 1 63.0 0.0 1.5 0.1 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031972 Acta1 ENSMUST00000034453 ENSMUSP00000034453 TRANSLATION protein_coding - CCDS22764.1 1 377.0 35.0 6.0 36.9 498.4 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000031972 Acta1 ENSMUST00000212584 ENSMUSP00000148594 TRANSLATION protein_coding stop - 2 151.0 8.0 2.0 0.7 192.1 0.0 -4,-5 0.0028 - -2.0 MINOR ENSMUSG00000019470 Xab2 ENSMUST00000159235 ENSMUSP00000124237 TRANSLATION nonsense_mediated_decay - - 3 90.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019470 Xab2 ENSMUST00000163038 - NO_TRANSLATION retained_intron ENSMUSG00000019470 Xab2 ENSMUST00000159548 ENSMUSP00000124202 TRANSLATION protein_coding start/stop - 5 285.0 0.0 6.25 0.0 16.8 0.0 -4,-5 0.0022 5 -2.0 MINOR ENSMUSG00000019470 Xab2 ENSMUST00000159909 - NO_TRANSLATION retained_intron ENSMUSG00000019470 Xab2 ENSMUST00000019614 ENSMUSP00000019614 TRANSLATION protein_coding - CCDS22065.1 1 855.0 0.0 17.66 8.9 28.6 0.0 -4,-5 1.0 24 15.0 PRINCIPAL:1 ENSMUSG00000056019 Zfp709 ENSMUST00000188374 ENSMUSP00000141000 TRANSLATION protein_coding - - 1 64.0 0.0 1.6 0.4 75.7 0.0 -4,-6 0.0004 - 5.334 MINOR ENSMUSG00000056019 Zfp709 ENSMUST00000034259 ENSMUSP00000034259 TRANSLATION protein_coding start - 5 726.0 72.0 1.8 0.3 344.2 0.0 -4,-5 0.6611 - -2.0 MINOR ENSMUSG00000056019 Zfp709 ENSMUST00000203585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056019 Zfp709 ENSMUST00000188685 ENSMUSP00000140285 TRANSLATION protein_coding - CCDS80897.1 1 727.0 72.0 1.8 0.0 344.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000005161 Prdx2 ENSMUST00000109734 ENSMUSP00000105356 TRANSLATION protein_coding - CCDS40416.1 2 198.0 0.0 5.25 36.9 194.7 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000005161 Prdx2 ENSMUST00000109733 ENSMUSP00000105355 TRANSLATION protein_coding - CCDS40416.1 2 198.0 0.0 5.25 36.9 194.7 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000005161 Prdx2 ENSMUST00000143402 - NO_TRANSLATION retained_intron ENSMUSG00000005161 Prdx2 ENSMUST00000005292 ENSMUSP00000005292 TRANSLATION protein_coding - CCDS40416.1 1 198.0 0.0 5.25 36.9 194.7 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000005161 Prdx2 ENSMUST00000138748 - NO_TRANSLATION retained_intron ENSMUSG00000005161 Prdx2 ENSMUST00000164807 ENSMUSP00000126451 TRANSLATION protein_coding - CCDS40416.1 1 198.0 0.0 5.25 36.9 194.7 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000005161 Prdx2 ENSMUST00000127215 - NO_TRANSLATION retained_intron ENSMUSG00000005161 Prdx2 ENSMUST00000125893 ENSMUSP00000122694 TRANSLATION protein_coding stop - 1 146.0 0.0 3.5 0.0 144.3 0.0 -4,-6 0.0219 9 -2.0 MINOR ENSMUSG00000031987 Egln1 ENSMUST00000034469 ENSMUSP00000034469 TRANSLATION protein_coding - CCDS52706.1 1 400.0 3.0 3.75 0.4 115.0 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000003847 Nfat5 ENSMUST00000148006 - NO_TRANSLATION retained_intron ENSMUSG00000003847 Nfat5 ENSMUST00000154474 ENSMUSP00000115036 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003847 Nfat5 ENSMUST00000151114 ENSMUSP00000119370 TRANSLATION protein_coding - CCDS22648.2 1 1552.0 0.0 5.83 3.1 166.1 0.0 -4,-5 1.0 8 9.354 PRINCIPAL:4 ENSMUSG00000003847 Nfat5 ENSMUST00000125721 ENSMUSP00000116094 TRANSLATION protein_coding - - 5 1534.0 0.0 5.83 4.1 166.1 0.0 -4,-5 0.948 8 10.0 ALTERNATIVE:2 ENSMUSG00000003847 Nfat5 ENSMUST00000077440 ENSMUSP00000076653 TRANSLATION protein_coding - CCDS40464.1 5 1458.0 0.0 5.83 3.9 166.1 0.0 -4,-7 0.9238 8 9.87 ALTERNATIVE:2 ENSMUSG00000003847 Nfat5 ENSMUST00000147588 ENSMUSP00000122871 TRANSLATION protein_coding start - 5 1033.0 0.0 1.0 0.0 30.7 0.0 -4,-6 0.0107 4 -2.0 MINOR ENSMUSG00000003847 Nfat5 ENSMUST00000126333 ENSMUSP00000118130 TRANSLATION nonsense_mediated_decay start - 5 135.0 0.0 2.0 0.0 56.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000003847 Nfat5 ENSMUST00000133026 ENSMUSP00000116631 TRANSLATION nonsense_mediated_decay - - 1 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003847 Nfat5 ENSMUST00000169453 ENSMUSP00000127784 TRANSLATION protein_coding - CCDS22648.2 5 1552.0 0.0 5.83 3.1 166.1 0.0 -4,-5 1.0 8 9.354 PRINCIPAL:4 ENSMUSG00000003847 Nfat5 ENSMUST00000151582 - NO_TRANSLATION retained_intron ENSMUSG00000003847 Nfat5 ENSMUST00000144100 ENSMUSP00000117554 TRANSLATION protein_coding start - 5 141.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003847 Nfat5 ENSMUST00000149972 - NO_TRANSLATION retained_intron ENSMUSG00000003847 Nfat5 ENSMUST00000075922 ENSMUSP00000075311 TRANSLATION protein_coding - CCDS72168.1 1 1225.0 0.0 5.83 0.0 166.1 0.0 -4,-5 0.4874 8 8.0 MINOR ENSMUSG00000003847 Nfat5 ENSMUST00000126397 - NO_TRANSLATION retained_intron ENSMUSG00000079114 Defa42 ENSMUST00000110752 ENSMUSP00000106380 TRANSLATION protein_coding - CCDS52508.1 1 116.0 0.0 0.0 0.0 82.6 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031898 Dpep3 ENSMUST00000034371 ENSMUSP00000034371 TRANSLATION protein_coding - CCDS22624.1 1 493.0 5.0 8.05 0.1 360.4 0.0 -1,-4 1.0 12 17.0 PRINCIPAL:1 ENSMUSG00000031847 1700030J22Rik ENSMUST00000070577 ENSMUSP00000070601 TRANSLATION protein_coding - CCDS22695.1 1 409.0 0.0 0.0 0.4 613.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031847 1700030J22Rik ENSMUST00000213068 ENSMUSP00000148789 TRANSLATION protein_coding - CCDS22695.1 1 409.0 0.0 0.0 0.4 613.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000004994 Yju2b ENSMUST00000166285 - NO_TRANSLATION retained_intron ENSMUSG00000004994 Yju2b ENSMUST00000164476 - NO_TRANSLATION retained_intron ENSMUSG00000004994 Yju2b ENSMUST00000166728 - NO_TRANSLATION retained_intron ENSMUSG00000004994 Yju2b ENSMUST00000163993 ENSMUSP00000125894 TRANSLATION protein_coding stop - 5 14.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004994 Yju2b ENSMUST00000098578 ENSMUSP00000096177 TRANSLATION protein_coding - CCDS40409.1 1 385.0 3.0 5.75 0.4 330.6 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000004994 Yju2b ENSMUST00000172320 ENSMUSP00000128605 TRANSLATION nonsense_mediated_decay - - 5 69.0 2.0 2.0 0.0 104.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004994 Yju2b ENSMUST00000005120 ENSMUSP00000005120 TRANSLATION protein_coding - CCDS80906.1 5 198.0 3.0 4.75 3.0 272.8 0.0 -4,-5 0.4647 1 10.534 MINOR ENSMUSG00000031509 Spaca7b ENSMUST00000190741 ENSMUSP00000140232 TRANSLATION protein_coding - - 2 34.0 0.0 1.08 0.0 0.0 0.0 -4,-6 0.0 - 4.104 MINOR ENSMUSG00000031509 Spaca7b ENSMUST00000190787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031509 Spaca7b ENSMUST00000033906 ENSMUSP00000033906 TRANSLATION protein_coding - CCDS40221.1 1 166.0 0.0 1.58 0.3 106.0 0.0 2,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000031509 Spaca7b ENSMUST00000191350 ENSMUSP00000139631 TRANSLATION protein_coding start - 5 57.0 0.0 1.58 0.0 0.0 0.0 -4,-5 0.0458 - -2.0 MINOR ENSMUSG00000031657 Heatr3 ENSMUST00000137452 - NO_TRANSLATION retained_intron ENSMUSG00000031657 Heatr3 ENSMUST00000131682 - NO_TRANSLATION retained_intron ENSMUSG00000031657 Heatr3 ENSMUST00000146946 - NO_TRANSLATION retained_intron ENSMUSG00000031657 Heatr3 ENSMUST00000034079 ENSMUSP00000034079 TRANSLATION protein_coding - CCDS22508.1 1 679.0 0.0 0.52 8.0 36.2 0.0 -4,-2 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000031657 Heatr3 ENSMUST00000121949 ENSMUSP00000112812 TRANSLATION protein_coding - - 1 562.0 0.0 0.52 6.3 0.0 0.0 -3,-6 0.5157 13 8.271 MINOR ENSMUSG00000040010 Slc7a5 ENSMUST00000182165 - NO_TRANSLATION retained_intron ENSMUSG00000040010 Slc7a5 ENSMUST00000183015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040010 Slc7a5 ENSMUST00000045557 ENSMUSP00000041557 TRANSLATION protein_coding - CCDS22730.1 1 512.0 0.0 8.8 4.1 93.8 0.0 -4,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000005465 Il27ra ENSMUST00000210245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005465 Il27ra ENSMUST00000005601 ENSMUSP00000005601 TRANSLATION protein_coding - CCDS22465.1 1 623.0 0.0 3.762 0.0 0.0 0.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000005465 Il27ra ENSMUST00000210790 - NO_TRANSLATION retained_intron ENSMUSG00000074447 Defa21 ENSMUST00000076754 ENSMUSP00000076041 TRANSLATION protein_coding - CCDS40264.1 1 93.0 0.0 1.0 0.1 97.4 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031631 Cfap97 ENSMUST00000145080 - NO_TRANSLATION retained_intron ENSMUSG00000031631 Cfap97 ENSMUST00000164504 ENSMUSP00000133211 TRANSLATION protein_coding - CCDS22288.1 1 541.0 0.0 0.0 0.3 62.2 0.0 -4,-5 1.0 7 2.0 PRINCIPAL:2 ENSMUSG00000031631 Cfap97 ENSMUST00000154040 ENSMUSP00000120522 TRANSLATION protein_coding stop - 3 205.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 5 -2.0 MINOR ENSMUSG00000031631 Cfap97 ENSMUST00000110376 ENSMUSP00000106005 TRANSLATION protein_coding - - 5 547.0 0.0 0.0 0.0 62.2 0.0 -4,-5 0.2213 7 2.0 ALTERNATIVE:2 ENSMUSG00000031631 Cfap97 ENSMUST00000145229 ENSMUSP00000115734 TRANSLATION protein_coding stop - 1 288.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.002 5 -2.0 MINOR ENSMUSG00000031631 Cfap97 ENSMUST00000034048 ENSMUSP00000034048 TRANSLATION protein_coding - CCDS22288.1 1 541.0 0.0 0.0 0.3 62.2 0.0 -4,-5 1.0 7 2.0 PRINCIPAL:2 ENSMUSG00000031562 Dctd ENSMUST00000033966 ENSMUSP00000033966 TRANSLATION protein_coding - - 1 178.0 4.0 4.75 8.6 98.1 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000031562 Dctd ENSMUST00000098773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031562 Dctd ENSMUST00000170263 ENSMUSP00000126733 TRANSLATION protein_coding - - 1 178.0 4.0 4.75 8.6 98.1 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000031562 Dctd ENSMUST00000174379 ENSMUSP00000134195 TRANSLATION protein_coding - - 3 98.0 0.0 2.2 0.0 37.7 0.0 -4,-5 0.0 1 3.204 MINOR ENSMUSG00000031562 Dctd ENSMUST00000173991 - NO_TRANSLATION retained_intron ENSMUSG00000031562 Dctd ENSMUST00000174278 ENSMUSP00000133445 TRANSLATION protein_coding - - 3 178.0 4.0 4.75 8.6 98.1 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000031562 Dctd ENSMUST00000174818 ENSMUSP00000134003 TRANSLATION nonsense_mediated_decay - - 1 144.0 4.0 3.0 0.0 88.1 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000042870 Tom1 ENSMUST00000211869 ENSMUSP00000148629 TRANSLATION protein_coding stop - 3 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042870 Tom1 ENSMUST00000211938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042870 Tom1 ENSMUST00000212564 ENSMUSP00000148584 TRANSLATION nonsense_mediated_decay - - 2 68.0 0.0 1.37 0.0 41.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042870 Tom1 ENSMUST00000078847 ENSMUSP00000077891 TRANSLATION protein_coding - CCDS52600.1 1 516.0 0.0 7.66 0.0 251.8 0.0 -4,-5 0.1659 13 12.0 MINOR ENSMUSG00000042870 Tom1 ENSMUST00000212299 ENSMUSP00000148670 TRANSLATION protein_coding stop - 3 141.0 0.0 3.0 0.0 69.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000042870 Tom1 ENSMUST00000212651 ENSMUSP00000148622 TRANSLATION protein_coding stop - 2 97.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000042870 Tom1 ENSMUST00000212388 ENSMUSP00000148271 TRANSLATION protein_coding stop - 3 96.0 0.0 2.08 0.0 93.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042870 Tom1 ENSMUST00000212278 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042870 Tom1 ENSMUST00000165630 ENSMUSP00000130854 TRANSLATION protein_coding - CCDS52601.1 1 492.0 0.0 7.66 9.8 251.8 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000036054 Sugp2 ENSMUST00000136758 - NO_TRANSLATION retained_intron ENSMUSG00000036054 Sugp2 ENSMUST00000136391 - NO_TRANSLATION retained_intron ENSMUSG00000036054 Sugp2 ENSMUST00000164403 ENSMUSP00000128029 TRANSLATION protein_coding - CCDS22362.1 1 1067.0 0.0 2.4 0.1 94.9 0.0 -4,-6 1.0 24 12.0 PRINCIPAL:1 ENSMUSG00000036054 Sugp2 ENSMUST00000145078 ENSMUSP00000114403 TRANSLATION protein_coding stop - 3 158.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000036054 Sugp2 ENSMUST00000093458 ENSMUSP00000091167 TRANSLATION protein_coding - CCDS22362.1 1 1067.0 0.0 2.4 0.1 94.9 0.0 -4,-6 1.0 24 12.0 PRINCIPAL:1 ENSMUSG00000036054 Sugp2 ENSMUST00000131489 ENSMUSP00000114833 TRANSLATION nonsense_mediated_decay - CCDS22362.1 2 1067.0 0.0 2.4 0.1 94.9 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000036054 Sugp2 ENSMUST00000156330 - NO_TRANSLATION retained_intron ENSMUSG00000036054 Sugp2 ENSMUST00000130492 - NO_TRANSLATION retained_intron ENSMUSG00000036054 Sugp2 ENSMUST00000148378 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036054 Sugp2 ENSMUST00000135640 - NO_TRANSLATION retained_intron ENSMUSG00000036054 Sugp2 ENSMUST00000126239 ENSMUSP00000118748 TRANSLATION protein_coding start - 1 244.0 0.0 0.0 0.0 57.1 0.0 -4,-5 0.0017 6 -2.0 MINOR ENSMUSG00000036054 Sugp2 ENSMUST00000133924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036054 Sugp2 ENSMUST00000129402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036054 Sugp2 ENSMUST00000155771 ENSMUSP00000120271 TRANSLATION protein_coding stop - 3 175.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000007888 Crlf1 ENSMUST00000132648 ENSMUSP00000119545 TRANSLATION protein_coding start/stop - 3 129.0 0.0 2.5 0.0 54.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000007888 Crlf1 ENSMUST00000127983 ENSMUSP00000115614 TRANSLATION protein_coding start - 2 118.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000007888 Crlf1 ENSMUST00000008032 ENSMUSP00000008032 TRANSLATION protein_coding - CCDS22369.1 1 425.0 0.0 5.83 4.2 86.8 0.0 -1,2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000008167 Fbxw9 ENSMUST00000151962 - NO_TRANSLATION retained_intron ENSMUSG00000008167 Fbxw9 ENSMUST00000141183 - NO_TRANSLATION retained_intron ENSMUSG00000008167 Fbxw9 ENSMUST00000142036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008167 Fbxw9 ENSMUST00000143763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008167 Fbxw9 ENSMUST00000145479 - NO_TRANSLATION retained_intron ENSMUSG00000008167 Fbxw9 ENSMUST00000125109 - NO_TRANSLATION retained_intron ENSMUSG00000008167 Fbxw9 ENSMUST00000095220 ENSMUSP00000092845 TRANSLATION protein_coding - CCDS40418.1 1 458.0 0.0 3.985 7.5 29.0 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000008167 Fbxw9 ENSMUST00000152884 - NO_TRANSLATION retained_intron ENSMUSG00000008167 Fbxw9 ENSMUST00000139721 - NO_TRANSLATION retained_intron ENSMUSG00000031919 Tmed6 ENSMUST00000034393 ENSMUSP00000034393 TRANSLATION protein_coding - CCDS22645.1 1 239.0 0.0 0.0 10.5 106.3 0.0 3,-1 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000031633 Slc25a4 ENSMUST00000155986 - NO_TRANSLATION retained_intron ENSMUSG00000031633 Slc25a4 ENSMUST00000034049 ENSMUSP00000034049 TRANSLATION protein_coding - CCDS40333.1 1 298.0 21.0 4.0 36.9 231.0 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000031495 Cd209d ENSMUST00000011445 ENSMUSP00000011445 TRANSLATION protein_coding - CCDS22075.1 1 237.0 15.0 5.35 1.1 80.0 0.0 -4,-6 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000031495 Cd209d ENSMUST00000209176 ENSMUSP00000147198 TRANSLATION protein_coding - - 1 207.0 15.0 4.35 1.0 80.0 0.0 -4,-5 0.0105 3 16.002 MINOR ENSMUSG00000058052 Defb35 ENSMUST00000076786 ENSMUSP00000076067 TRANSLATION protein_coding - CCDS52516.1 1 63.0 0.0 0.0 0.0 25.1 0.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000037852 Cpe ENSMUST00000210680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037852 Cpe ENSMUST00000211312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037852 Cpe ENSMUST00000048967 ENSMUSP00000048555 TRANSLATION protein_coding - CCDS22327.1 1 476.0 8.0 9.0 0.0 332.6 0.0 4,-1 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000037852 Cpe ENSMUST00000210783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056608 Chd9 ENSMUST00000209746 ENSMUSP00000147296 TRANSLATION protein_coding stop - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000056608 Chd9 ENSMUST00000211795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056608 Chd9 ENSMUST00000209203 ENSMUSP00000147407 TRANSLATION nonsense_mediated_decay - - 1 1853.0 7.0 8.965 0.0 359.6 0.0 -4,-5 0.0457 8 -2.0 MINOR ENSMUSG00000056608 Chd9 ENSMUST00000210887 - NO_TRANSLATION retained_intron ENSMUSG00000056608 Chd9 ENSMUST00000211215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056608 Chd9 ENSMUST00000209474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056608 Chd9 ENSMUST00000211403 ENSMUSP00000147839 TRANSLATION protein_coding stop - 1 641.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0048 2 -2.0 MINOR ENSMUSG00000056608 Chd9 ENSMUST00000209531 - NO_TRANSLATION retained_intron ENSMUSG00000056608 Chd9 ENSMUST00000211552 - NO_TRANSLATION retained_intron ENSMUSG00000056608 Chd9 ENSMUST00000209341 - NO_TRANSLATION retained_intron ENSMUSG00000056608 Chd9 ENSMUST00000210947 ENSMUSP00000147741 TRANSLATION protein_coding stop - 1 874.0 7.0 8.645 0.0 359.6 0.0 -4,-7 0.013 3 -2.0 MINOR ENSMUSG00000056608 Chd9 ENSMUST00000048665 ENSMUSP00000046356 TRANSLATION protein_coding - CCDS22517.1 1 2869.0 7.0 11.565 0.0 461.3 0.0 -4,-5 1.0 15 14.0 PRINCIPAL:2 ENSMUSG00000056608 Chd9 ENSMUST00000209423 ENSMUSP00000148088 TRANSLATION protein_coding - CCDS80912.1 1 2885.0 7.0 11.565 0.0 461.3 0.0 -4,-5 0.6438 15 14.0 ALTERNATIVE:2 ENSMUSG00000056608 Chd9 ENSMUST00000211034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056608 Chd9 ENSMUST00000109614 ENSMUSP00000105243 TRANSLATION protein_coding - CCDS80912.1 5 2885.0 7.0 11.565 0.0 461.3 0.0 -4,-5 0.6438 15 14.0 ALTERNATIVE:2 ENSMUSG00000013878 Rnf170 ENSMUST00000110575 ENSMUSP00000106204 TRANSLATION protein_coding - - 1 216.0 6.0 0.95 0.0 0.0 2.0 -4,-7 0.0015 2 6.546 MINOR ENSMUSG00000013878 Rnf170 ENSMUST00000110579 ENSMUSP00000106208 TRANSLATION nonsense_mediated_decay - - 1 140.0 6.0 0.95 0.0 22.5 2.0 -4,-7 0.0033 2 -2.0 MINOR ENSMUSG00000013878 Rnf170 ENSMUST00000124867 ENSMUSP00000115959 TRANSLATION nonsense_mediated_decay start - 3 113.0 5.0 0.95 0.0 0.0 2.0 -4,-7 0.0033 2 -2.0 MINOR ENSMUSG00000013878 Rnf170 ENSMUST00000014022 ENSMUSP00000014022 TRANSLATION protein_coding - CCDS22207.1 1 286.0 8.0 2.782 0.1 73.4 4.0 -4,-7 0.285 6 14.0 ALTERNATIVE:2 ENSMUSG00000013878 Rnf170 ENSMUST00000140819 ENSMUSP00000119906 TRANSLATION protein_coding stop - 3 135.0 5.0 0.95 0.0 0.0 2.0 -4,-7 0.0033 2 -2.0 MINOR ENSMUSG00000013878 Rnf170 ENSMUST00000209300 ENSMUSP00000147842 TRANSLATION protein_coding - - 1 142.0 5.0 0.95 0.0 0.0 2.0 -4,-7 0.0033 2 5.796 MINOR ENSMUSG00000013878 Rnf170 ENSMUST00000209707 ENSMUSP00000147376 TRANSLATION protein_coding stop - 1 249.0 8.0 2.782 0.0 35.0 3.0 -4,-7 0.0615 6 -2.0 MINOR ENSMUSG00000013878 Rnf170 ENSMUST00000124757 ENSMUSP00000115588 TRANSLATION nonsense_mediated_decay - - 1 144.0 5.0 0.95 0.0 0.0 2.0 -4,-7 0.0033 2 -2.0 MINOR ENSMUSG00000013878 Rnf170 ENSMUST00000153528 ENSMUSP00000118689 TRANSLATION protein_coding - - 1 239.0 8.0 2.782 0.1 73.4 2.0 -4,-6 0.7275 6 14.0 PRINCIPAL:2 ENSMUSG00000013878 Rnf170 ENSMUST00000110573 - NO_TRANSLATION retained_intron ENSMUSG00000000303 Cdh1 ENSMUST00000000312 ENSMUSP00000000312 TRANSLATION protein_coding - CCDS22638.1 1 884.0 64.0 12.0 6.2 513.1 0.0 3,-2 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000000303 Cdh1 ENSMUST00000136580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031762 Mt2 ENSMUST00000212806 ENSMUSP00000148308 TRANSLATION protein_coding - - 2 76.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0004 - 0.0 MINOR ENSMUSG00000031762 Mt2 ENSMUST00000034214 ENSMUSP00000034214 TRANSLATION protein_coding - CCDS40437.1 1 61.0 7.0 1.83 17.5 68.8 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000033313 Fbxl8 ENSMUST00000126923 ENSMUSP00000115366 TRANSLATION nonsense_mediated_decay - - 1 55.0 0.0 0.0 0.0 48.2 0.0 -4,-5 0.0233 1 -2.0 MINOR ENSMUSG00000033313 Fbxl8 ENSMUST00000036221 ENSMUSP00000038638 TRANSLATION protein_coding - CCDS22595.1 1 374.0 0.0 0.0 11.8 42.3 0.0 -4,-5 1.0 8 8.268 PRINCIPAL:1 ENSMUSG00000035770 Dync1li2 ENSMUST00000212343 - NO_TRANSLATION retained_intron ENSMUSG00000035770 Dync1li2 ENSMUST00000212230 ENSMUSP00000148716 TRANSLATION protein_coding start - 5 406.0 11.0 5.0 0.0 725.3 0.0 -4,-5 0.0326 15 -2.0 MINOR ENSMUSG00000035770 Dync1li2 ENSMUST00000212040 - NO_TRANSLATION retained_intron ENSMUSG00000035770 Dync1li2 ENSMUST00000212678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035770 Dync1li2 ENSMUST00000041769 ENSMUSP00000045480 TRANSLATION protein_coding - CCDS22579.1 1 492.0 18.0 6.65 17.9 866.5 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000035770 Dync1li2 ENSMUST00000211804 - NO_TRANSLATION retained_intron ENSMUSG00000035770 Dync1li2 ENSMUST00000212654 ENSMUSP00000148681 TRANSLATION nonsense_mediated_decay - - 1 470.0 18.0 6.65 0.0 833.7 0.0 -4,-5 0.0897 15 -2.0 MINOR ENSMUSG00000035770 Dync1li2 ENSMUST00000212148 ENSMUSP00000148372 TRANSLATION nonsense_mediated_decay start - 3 53.0 0.0 0.75 0.0 49.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031451 Gas6 ENSMUST00000033828 ENSMUSP00000033828 TRANSLATION protein_coding - CCDS40232.1 1 674.0 19.0 10.852 2.4 270.2 0.0 1,-2 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000014782 Plekhg4 ENSMUST00000160191 ENSMUSP00000125249 TRANSLATION protein_coding - - 5 1112.0 0.0 2.8 0.0 96.6 0.0 -4,-5 0.3442 1 8.0 ALTERNATIVE:2 ENSMUSG00000014782 Plekhg4 ENSMUST00000214056 ENSMUSP00000150574 TRANSLATION protein_coding - - 5 1217.0 0.0 2.8 0.0 96.6 0.0 -4,-7 0.9989 1 8.0 PRINCIPAL:4 ENSMUSG00000014782 Plekhg4 ENSMUST00000161672 - NO_TRANSLATION retained_intron ENSMUSG00000014782 Plekhg4 ENSMUST00000160650 ENSMUSP00000124061 TRANSLATION protein_coding stop - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000014782 Plekhg4 ENSMUST00000159286 ENSMUSP00000125556 TRANSLATION nonsense_mediated_decay - - 1 297.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0022 - -2.0 MINOR ENSMUSG00000014782 Plekhg4 ENSMUST00000014927 ENSMUSP00000014927 TRANSLATION protein_coding - CCDS40458.1 5 1181.0 0.0 2.8 0.0 96.6 0.0 -4,-5 0.7953 1 8.0 ALTERNATIVE:2 ENSMUSG00000031586 Rbpms ENSMUST00000183336 ENSMUSP00000138533 TRANSLATION nonsense_mediated_decay start - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031586 Rbpms ENSMUST00000182184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031586 Rbpms ENSMUST00000231786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031586 Rbpms ENSMUST00000033995 ENSMUSP00000033995 TRANSLATION protein_coding - CCDS40318.1 1 220.0 0.0 3.05 9.4 45.0 0.0 -4,-5 0.6906 5 13.848 MINOR ENSMUSG00000031586 Rbpms ENSMUST00000183122 - NO_TRANSLATION retained_intron ENSMUSG00000031586 Rbpms ENSMUST00000183062 ENSMUSP00000138726 TRANSLATION protein_coding stop - 3 64.0 0.0 0.3 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000031586 Rbpms ENSMUST00000182256 ENSMUSP00000138140 TRANSLATION nonsense_mediated_decay - - 3 93.0 0.0 0.3 0.0 0.0 0.0 -4,-6 0.0003 2 -2.0 MINOR ENSMUSG00000031586 Rbpms ENSMUST00000182926 ENSMUSP00000138361 TRANSLATION nonsense_mediated_decay start - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031586 Rbpms ENSMUST00000053251 ENSMUSP00000055813 TRANSLATION protein_coding - CCDS40317.1 1 197.0 0.0 3.05 19.2 45.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000031586 Rbpms ENSMUST00000182987 ENSMUSP00000138483 TRANSLATION nonsense_mediated_decay - CCDS40317.1 1 197.0 0.0 3.05 19.2 45.0 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000031586 Rbpms ENSMUST00000033994 ENSMUSP00000033994 TRANSLATION protein_coding - CCDS72112.1 1 191.0 0.0 3.05 0.8 45.0 0.0 -4,-5 0.2778 4 12.0 MINOR ENSMUSG00000031586 Rbpms ENSMUST00000231942 - NO_TRANSLATION retained_intron ENSMUSG00000031586 Rbpms ENSMUST00000183088 ENSMUSP00000138420 TRANSLATION protein_coding stop - 5 159.0 0.0 3.05 0.0 45.0 0.0 -4,-1 0.029 4 -2.0 MINOR ENSMUSG00000031586 Rbpms ENSMUST00000191473 ENSMUSP00000140387 TRANSLATION protein_coding - CCDS40317.1 1 197.0 0.0 3.05 19.2 45.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000031586 Rbpms ENSMUST00000182871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091813 Ces2h ENSMUST00000172032 ENSMUSP00000126773 TRANSLATION protein_coding - CCDS59742.1 5 558.0 6.0 10.65 4.5 548.3 0.0 2,-3 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000031774 Psme3ip1 ENSMUST00000212696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031774 Psme3ip1 ENSMUST00000211833 ENSMUSP00000148649 TRANSLATION nonsense_mediated_decay start - 5 62.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031774 Psme3ip1 ENSMUST00000212547 ENSMUSP00000148606 TRANSLATION protein_coding stop - 3 36.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031774 Psme3ip1 ENSMUST00000212258 ENSMUSP00000148392 TRANSLATION protein_coding stop - 3 90.0 0.0 2.094 0.0 95.5 0.0 -4,-5 0.0004 1 -2.0 MINOR ENSMUSG00000031774 Psme3ip1 ENSMUST00000212791 ENSMUSP00000148506 TRANSLATION protein_coding stop - 5 194.0 0.0 3.372 0.0 113.2 0.0 -4,-5 0.0062 4 -2.0 MINOR ENSMUSG00000031774 Psme3ip1 ENSMUST00000212765 ENSMUSP00000148497 TRANSLATION protein_coding stop - 3 86.0 0.0 2.094 0.0 87.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031774 Psme3ip1 ENSMUST00000212788 ENSMUSP00000148325 TRANSLATION protein_coding stop - 5 83.0 0.0 2.094 0.0 82.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031774 Psme3ip1 ENSMUST00000212507 ENSMUSP00000148524 TRANSLATION protein_coding stop - 5 173.0 0.0 3.372 0.0 113.2 0.0 -4,-5 0.0066 4 -2.0 MINOR ENSMUSG00000031774 Psme3ip1 ENSMUST00000034226 ENSMUSP00000034226 TRANSLATION protein_coding - CCDS40439.1 1 254.0 0.0 3.372 20.5 113.2 0.0 -4,-5 1.0 4 15.868 PRINCIPAL:1 ENSMUSG00000031774 Psme3ip1 ENSMUST00000213008 ENSMUSP00000148379 TRANSLATION protein_coding stop - 5 113.0 0.0 2.844 0.0 108.8 0.0 -4,-5 0.0059 2 -2.0 MINOR ENSMUSG00000031774 Psme3ip1 ENSMUST00000212083 ENSMUSP00000148547 TRANSLATION protein_coding stop - 5 129.0 0.0 3.438 0.0 113.2 0.0 -4,-5 0.0098 3 -2.0 MINOR ENSMUSG00000031774 Psme3ip1 ENSMUST00000212262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031774 Psme3ip1 ENSMUST00000212429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031774 Psme3ip1 ENSMUST00000213022 ENSMUSP00000148543 TRANSLATION protein_coding stop - 3 143.0 0.0 3.372 0.0 113.2 0.0 -4,-5 0.0066 4 -2.0 MINOR ENSMUSG00000031774 Psme3ip1 ENSMUST00000212485 - NO_TRANSLATION retained_intron ENSMUSG00000031774 Psme3ip1 ENSMUST00000212159 ENSMUSP00000148342 TRANSLATION protein_coding stop - 5 110.0 0.0 2.844 0.0 106.1 0.0 -4,-5 0.003 2 -2.0 MINOR ENSMUSG00000063206 Defa34 ENSMUST00000075268 ENSMUSP00000074745 TRANSLATION protein_coding - CCDS52514.1 2 93.0 0.0 1.0 0.1 115.5 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031970 Dbndd1 ENSMUST00000176155 ENSMUSP00000135524 TRANSLATION protein_coding - - 1 160.0 0.0 1.0 8.8 155.3 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000031970 Dbndd1 ENSMUST00000177240 ENSMUSP00000135216 TRANSLATION protein_coding - - 1 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000031970 Dbndd1 ENSMUST00000176286 ENSMUSP00000134757 TRANSLATION protein_coding - - 1 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000046707 Csnk2a2 ENSMUST00000212214 ENSMUSP00000148404 TRANSLATION protein_coding - CCDS22562.1 1 350.0 19.0 10.03 28.5 239.6 0.0 -4,-7 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000046707 Csnk2a2 ENSMUST00000056919 ENSMUSP00000055919 TRANSLATION protein_coding - CCDS22562.1 1 350.0 19.0 10.03 28.5 239.6 0.0 -4,-7 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000046707 Csnk2a2 ENSMUST00000212616 ENSMUSP00000148660 TRANSLATION protein_coding start - 5 235.0 5.0 6.28 0.0 174.1 0.0 -4,-7 0.0 12 -2.0 MINOR ENSMUSG00000046707 Csnk2a2 ENSMUST00000212615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046707 Csnk2a2 ENSMUST00000211980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046707 Csnk2a2 ENSMUST00000212629 - NO_TRANSLATION retained_intron ENSMUSG00000046707 Csnk2a2 ENSMUST00000212338 - NO_TRANSLATION retained_intron ENSMUSG00000046707 Csnk2a2 ENSMUST00000212441 ENSMUSP00000148460 TRANSLATION nonsense_mediated_decay start - 5 53.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000046707 Csnk2a2 ENSMUST00000212952 ENSMUSP00000148333 TRANSLATION protein_coding start/stop - 5 238.0 7.0 6.83 0.0 103.4 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000046707 Csnk2a2 ENSMUST00000212750 ENSMUSP00000148633 TRANSLATION protein_coding start - 1 121.0 0.0 3.03 0.0 32.1 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000031723 Txnl4b ENSMUST00000178445 ENSMUSP00000137524 TRANSLATION protein_coding - CCDS40469.1 1 149.0 0.0 3.0 33.8 185.4 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031723 Txnl4b ENSMUST00000034159 ENSMUSP00000034159 TRANSLATION protein_coding - CCDS40469.1 1 149.0 0.0 3.0 33.8 185.4 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000057228 Aadat ENSMUST00000079472 ENSMUSP00000078436 TRANSLATION protein_coding - CCDS22320.1 1 425.0 13.0 11.0 30.1 75.7 0.0 -4,0 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000057228 Aadat ENSMUST00000211032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057228 Aadat ENSMUST00000209338 ENSMUSP00000148060 TRANSLATION protein_coding - - 1 432.0 13.0 10.25 0.0 75.7 0.0 -4,-7 0.0775 11 16.5 MINOR ENSMUSG00000036977 Anapc10 ENSMUST00000210485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036977 Anapc10 ENSMUST00000210812 ENSMUSP00000148220 TRANSLATION protein_coding - CCDS22439.1 1 185.0 3.0 4.0 36.9 273.1 0.0 -4,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000036977 Anapc10 ENSMUST00000048147 ENSMUSP00000048244 TRANSLATION protein_coding - CCDS22439.1 1 185.0 3.0 4.0 36.9 273.1 0.0 -4,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000062826 Ces2f ENSMUST00000212820 ENSMUSP00000148278 TRANSLATION nonsense_mediated_decay - CCDS40453.1 1 561.0 6.0 10.35 1.8 550.3 0.0 0,-3 1.0 - -2.0 MINOR ENSMUSG00000062826 Ces2f ENSMUST00000212926 ENSMUSP00000148840 TRANSLATION protein_coding - - 1 430.0 2.0 8.35 0.1 301.9 0.0 0,-3 0.0012 2 3.996 MINOR ENSMUSG00000062826 Ces2f ENSMUST00000076384 ENSMUSP00000075722 TRANSLATION protein_coding - CCDS40453.1 1 561.0 6.0 10.35 1.8 550.3 0.0 0,-3 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000031644 Nek1 ENSMUST00000142601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031644 Nek1 ENSMUST00000120689 ENSMUSP00000113932 TRANSLATION protein_coding - CCDS80879.1 1 1231.0 21.0 7.3 0.4 234.5 0.0 -4,-5 0.5848 12 12.0 ALTERNATIVE:2 ENSMUSG00000031644 Nek1 ENSMUST00000034065 ENSMUSP00000034065 TRANSLATION protein_coding - CCDS40347.1 1 1203.0 21.0 7.3 0.4 234.5 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:2 ENSMUSG00000031644 Nek1 ENSMUST00000211672 ENSMUSP00000147809 TRANSLATION protein_coding - CCDS85541.1 1 1275.0 21.0 7.3 0.0 234.5 0.0 -4,-5 0.5043 12 12.0 ALTERNATIVE:2 ENSMUSG00000031644 Nek1 ENSMUST00000140444 - NO_TRANSLATION retained_intron ENSMUSG00000031644 Nek1 ENSMUST00000155664 - NO_TRANSLATION retained_intron ENSMUSG00000031644 Nek1 ENSMUST00000125717 - NO_TRANSLATION retained_intron ENSMUSG00000031644 Nek1 ENSMUST00000211256 ENSMUSP00000147258 TRANSLATION protein_coding - CCDS85542.1 1 1178.0 21.0 7.3 0.4 234.5 0.0 -4,-5 0.555 12 12.0 ALTERNATIVE:2 ENSMUSG00000031644 Nek1 ENSMUST00000154313 - NO_TRANSLATION retained_intron ENSMUSG00000039375 Wdr17 ENSMUST00000126316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039375 Wdr17 ENSMUST00000176866 ENSMUSP00000134978 TRANSLATION protein_coding stop - 5 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039375 Wdr17 ENSMUST00000148806 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039375 Wdr17 ENSMUST00000128850 - NO_TRANSLATION retained_intron ENSMUSG00000039375 Wdr17 ENSMUST00000129132 ENSMUSP00000134935 TRANSLATION protein_coding - - 1 279.0 0.0 1.11 0.0 13.6 0.0 -4,-6 0.0 4 0.0 MINOR ENSMUSG00000039375 Wdr17 ENSMUST00000176180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039375 Wdr17 ENSMUST00000150488 ENSMUSP00000122326 TRANSLATION protein_coding - CCDS52551.1 1 1290.0 0.0 5.82 21.3 124.5 0.0 -4,-6 1.0 21 15.502 PRINCIPAL:1 ENSMUSG00000039375 Wdr17 ENSMUST00000127511 ENSMUSP00000115550 TRANSLATION protein_coding - - 5 1322.0 0.0 5.82 9.0 124.5 0.0 -4,-5 0.6114 21 13.078 MINOR ENSMUSG00000039375 Wdr17 ENSMUST00000144482 ENSMUSP00000134950 TRANSLATION protein_coding start/stop - 3 246.0 0.0 2.945 0.0 38.7 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000039375 Wdr17 ENSMUST00000144711 ENSMUSP00000117710 TRANSLATION protein_coding - CCDS22309.2 1 1297.0 0.0 6.07 0.0 124.5 0.0 -4,-5 0.5328 20 12.0 MINOR ENSMUSG00000039375 Wdr17 ENSMUST00000175915 ENSMUSP00000135805 TRANSLATION protein_coding - - 5 1283.0 0.0 5.82 13.6 124.5 0.0 -4,-6 0.7793 21 13.986 MINOR ENSMUSG00000039375 Wdr17 ENSMUST00000148408 ENSMUSP00000135523 TRANSLATION protein_coding stop - 5 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039375 Wdr17 ENSMUST00000153074 - NO_TRANSLATION retained_intron ENSMUSG00000006273 Atp6v1b2 ENSMUST00000129797 - NO_TRANSLATION retained_intron ENSMUSG00000006273 Atp6v1b2 ENSMUST00000006435 ENSMUSP00000006435 TRANSLATION protein_coding - CCDS40358.1 1 511.0 0.0 12.4 19.2 277.2 0.0 -4,-7 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000006273 Atp6v1b2 ENSMUST00000123290 - NO_TRANSLATION retained_intron ENSMUSG00000006273 Atp6v1b2 ENSMUST00000153079 - NO_TRANSLATION retained_intron ENSMUSG00000006273 Atp6v1b2 ENSMUST00000153680 - NO_TRANSLATION retained_intron ENSMUSG00000006273 Atp6v1b2 ENSMUST00000125211 - NO_TRANSLATION retained_intron ENSMUSG00000074300 Smim31 ENSMUST00000098713 ENSMUSP00000147515 TRANSLATION protein_coding - - 1 71.0 0.0 1.0 1.0 0.0 0.0 0,-5 0.7097 - 6.0 PRINCIPAL:1 ENSMUSG00000011832 Evi5l ENSMUST00000177309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011832 Evi5l ENSMUST00000177499 - NO_TRANSLATION retained_intron ENSMUSG00000011832 Evi5l ENSMUST00000176764 ENSMUSP00000134857 TRANSLATION nonsense_mediated_decay - - 1 451.0 0.0 7.1 0.0 183.8 0.0 -4,-5 0.0413 6 -2.0 MINOR ENSMUSG00000011832 Evi5l ENSMUST00000177455 - NO_TRANSLATION retained_intron ENSMUSG00000011832 Evi5l ENSMUST00000176186 - NO_TRANSLATION retained_intron ENSMUSG00000011832 Evi5l ENSMUST00000176825 ENSMUSP00000135700 TRANSLATION protein_coding - - 5 797.0 0.0 7.1 6.4 183.8 0.0 -4,-5 1.0 14 8.0 PRINCIPAL:4 ENSMUSG00000011832 Evi5l ENSMUST00000176645 ENSMUSP00000135744 TRANSLATION protein_coding start - 1 186.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000011832 Evi5l ENSMUST00000177053 ENSMUSP00000135159 TRANSLATION protein_coding - CCDS40207.2 1 406.0 0.0 7.1 0.4 183.8 0.0 -4,-5 0.3928 3 6.0 MINOR ENSMUSG00000011832 Evi5l ENSMUST00000239400 ENSMUSP00000159328 TRANSLATION protein_coding - - - 401.0 0.0 7.1 0.0 183.8 0.0 -4,-5 0.0418 3 6.0 MINOR ENSMUSG00000011832 Evi5l ENSMUST00000176149 ENSMUSP00000135479 TRANSLATION protein_coding - - 5 808.0 0.0 7.1 6.1 183.8 0.0 -4,-5 0.9324 14 7.888 ALTERNATIVE:1 ENSMUSG00000011832 Evi5l ENSMUST00000176072 ENSMUSP00000134867 TRANSLATION protein_coding - - 5 750.0 0.0 7.1 0.0 183.8 0.0 -4,-5 0.0659 10 6.0 MINOR ENSMUSG00000011832 Evi5l ENSMUST00000177085 - NO_TRANSLATION retained_intron ENSMUSG00000011832 Evi5l ENSMUST00000175650 - NO_TRANSLATION retained_intron ENSMUSG00000011832 Evi5l ENSMUST00000177077 - NO_TRANSLATION retained_intron ENSMUSG00000011832 Evi5l ENSMUST00000176462 - NO_TRANSLATION retained_intron ENSMUSG00000031971 Ccsap ENSMUST00000034452 ENSMUSP00000034452 TRANSLATION protein_coding - CCDS22763.1 1 252.0 0.0 0.0 0.4 319.9 0.0 -4,-6 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000031971 Ccsap ENSMUST00000122421 ENSMUSP00000113319 TRANSLATION protein_coding - CCDS22763.1 1 252.0 0.0 0.0 0.4 319.9 0.0 -4,-6 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000038069 Cdkn2aip ENSMUST00000212175 ENSMUSP00000148441 TRANSLATION protein_coding - CCDS22299.1 1 563.0 0.0 1.064 0.1 113.0 0.0 -4,-5 0.4471 19 12.0 MINOR ENSMUSG00000038069 Cdkn2aip ENSMUST00000038738 ENSMUSP00000043713 TRANSLATION protein_coding - - 1 119.0 0.0 0.998 7.0 113.0 0.0 -4,-5 1.0 2 13.628 PRINCIPAL:1 ENSMUSG00000038069 Cdkn2aip ENSMUST00000212658 - NO_TRANSLATION retained_intron ENSMUSG00000039079 Trhr2 ENSMUST00000044123 ENSMUSP00000042575 TRANSLATION protein_coding - CCDS22734.1 1 382.0 0.0 1.4 0.0 181.6 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000037940 Inpp4b ENSMUST00000165821 - NO_TRANSLATION retained_intron ENSMUSG00000037940 Inpp4b ENSMUST00000215332 ENSMUSP00000148972 TRANSLATION protein_coding - CCDS80902.1 1 927.0 0.0 1.588 11.0 0.0 0.0 -4,-5 1.0 22 9.0 PRINCIPAL:3 ENSMUSG00000037940 Inpp4b ENSMUST00000109852 ENSMUSP00000105478 TRANSLATION protein_coding - CCDS80901.1 5 941.0 0.0 1.588 8.0 0.0 0.0 -4,-5 0.9082 21 8.1 ALTERNATIVE:1 ENSMUSG00000037940 Inpp4b ENSMUST00000170160 ENSMUSP00000132156 TRANSLATION protein_coding stop - 1 633.0 0.0 0.988 0.0 0.0 0.0 -4,-5 0.028 14 -2.0 MINOR ENSMUSG00000037940 Inpp4b ENSMUST00000213285 ENSMUSP00000150520 TRANSLATION protein_coding stop - 1 818.0 0.0 0.988 0.0 0.0 0.0 -4,-5 0.0416 19 -2.0 MINOR ENSMUSG00000037940 Inpp4b ENSMUST00000169387 ENSMUSP00000130104 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0095 - -2.0 MINOR ENSMUSG00000037940 Inpp4b ENSMUST00000216387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037940 Inpp4b ENSMUST00000217122 ENSMUSP00000150541 TRANSLATION protein_coding - CCDS80901.1 1 941.0 0.0 1.588 8.0 0.0 0.0 -4,-5 0.9082 21 8.1 ALTERNATIVE:1 ENSMUSG00000037940 Inpp4b ENSMUST00000169116 ENSMUSP00000131947 TRANSLATION protein_coding stop - 5 818.0 0.0 0.988 0.0 0.0 0.0 -4,-5 0.0416 19 -2.0 MINOR ENSMUSG00000037940 Inpp4b ENSMUST00000042529 ENSMUSP00000044466 TRANSLATION protein_coding - CCDS22446.1 1 924.0 0.0 1.588 1.2 0.0 0.0 -4,-5 0.5081 21 6.06 MINOR ENSMUSG00000037940 Inpp4b ENSMUST00000109851 ENSMUSP00000105477 TRANSLATION protein_coding - - 1 809.0 0.0 1.588 0.0 0.0 0.0 -4,-6 0.0786 18 6.0 MINOR ENSMUSG00000037940 Inpp4b ENSMUST00000172031 ENSMUSP00000131324 TRANSLATION protein_coding - CCDS80902.1 5 927.0 0.0 1.588 11.0 0.0 0.0 -4,-5 1.0 22 9.0 PRINCIPAL:3 ENSMUSG00000037940 Inpp4b ENSMUST00000216036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037940 Inpp4b ENSMUST00000172167 - NO_TRANSLATION retained_intron ENSMUSG00000037940 Inpp4b ENSMUST00000164870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031955 Bcar1 ENSMUST00000166232 ENSMUSP00000129584 TRANSLATION protein_coding - CCDS52675.1 1 874.0 0.0 2.4 8.1 466.5 0.0 -4,-5 1.0 13 11.0 PRINCIPAL:5 ENSMUSG00000031955 Bcar1 ENSMUST00000212147 - NO_TRANSLATION retained_intron ENSMUSG00000031955 Bcar1 ENSMUST00000212349 ENSMUSP00000148364 TRANSLATION protein_coding - CCDS85616.1 1 874.0 0.0 2.4 8.1 466.5 0.0 -4,-5 1.0 13 11.0 ALTERNATIVE:1 ENSMUSG00000033106 Slc7a6os ENSMUST00000212150 - NO_TRANSLATION retained_intron ENSMUSG00000033106 Slc7a6os ENSMUST00000035925 ENSMUSP00000039029 TRANSLATION protein_coding - CCDS22632.1 1 306.0 0.0 0.0 4.5 37.5 0.0 -4,-2 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000033106 Slc7a6os ENSMUST00000212587 - NO_TRANSLATION retained_intron ENSMUSG00000033106 Slc7a6os ENSMUST00000212397 - NO_TRANSLATION retained_intron ENSMUSG00000001672 Marveld3 ENSMUST00000001722 ENSMUSP00000001722 TRANSLATION protein_coding - CCDS22656.1 1 385.0 0.0 0.0 1.5 0.0 4.0 -4,-5 0.1703 2 1.0 MINOR ENSMUSG00000001672 Marveld3 ENSMUST00000155052 - NO_TRANSLATION retained_intron ENSMUSG00000001672 Marveld3 ENSMUST00000051430 ENSMUSP00000052309 TRANSLATION protein_coding - CCDS22657.1 1 376.0 0.0 0.0 1.2 53.0 3.0 -4,-5 1.0 2 6.4 PRINCIPAL:1 ENSMUSG00000040165 Cd209c ENSMUST00000208622 ENSMUSP00000147005 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 1.05 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000040165 Cd209c ENSMUST00000127592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040165 Cd209c ENSMUST00000208902 - NO_TRANSLATION retained_intron ENSMUSG00000040165 Cd209c ENSMUST00000044060 ENSMUSP00000039861 TRANSLATION protein_coding - CCDS22078.1 1 178.0 10.0 4.38 0.0 81.4 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000040165 Cd209c ENSMUST00000153915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095845 Gng14 ENSMUST00000177563 ENSMUSP00000136655 TRANSLATION protein_coding - CCDS57629.1 1 72.0 0.0 2.0 25.9 55.9 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000005413 Hmox1 ENSMUST00000159631 - NO_TRANSLATION retained_intron ENSMUSG00000005413 Hmox1 ENSMUST00000005548 ENSMUSP00000005548 TRANSLATION protein_coding - CCDS22423.1 1 289.0 22.0 2.965 9.2 274.7 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000046723 Adam24 ENSMUST00000051614 ENSMUSP00000050727 TRANSLATION protein_coding - CCDS22255.1 1 761.0 16.0 0.16 0.0 374.7 0.0 2,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000118664 Tusc3 ENSMUST00000239508 ENSMUSP00000159386 TRANSLATION protein_coding - - - 347.0 0.0 7.5 6.6 364.8 4.0 0,1 0.9791 6 10.0 ALTERNATIVE:1 ENSMUSG00000118664 Tusc3 ENSMUST00000239511 - NO_TRANSLATION retained_intron ENSMUSG00000118664 Tusc3 ENSMUST00000239510 ENSMUSP00000159388 TRANSLATION nonsense_mediated_decay - - - 105.0 0.0 1.0 0.0 48.8 0.0 0,-4 0.0 1 -2.0 MINOR ENSMUSG00000118664 Tusc3 ENSMUST00000239509 ENSMUSP00000159387 TRANSLATION protein_coding - - - 348.0 0.0 7.5 6.6 364.8 4.0 0,1 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000031471 Defb8 ENSMUST00000033854 ENSMUSP00000033854 TRANSLATION protein_coding - CCDS40259.1 1 60.0 0.0 1.0 0.4 35.3 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031958 Ldhd ENSMUST00000173909 - NO_TRANSLATION retained_intron ENSMUSG00000031958 Ldhd ENSMUST00000173521 - NO_TRANSLATION retained_intron ENSMUSG00000031958 Ldhd ENSMUST00000070004 ENSMUSP00000068086 TRANSLATION protein_coding - CCDS22677.1 1 484.0 0.0 10.0 9.0 361.9 0.0 -4,0 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000043687 1190005I06Rik ENSMUST00000123927 ENSMUSP00000119467 TRANSLATION protein_coding - CCDS52690.1 1 111.0 0.0 0.0 0.4 137.1 0.0 -4,-2 0.2051 - 6.0 MINOR ENSMUSG00000043687 1190005I06Rik ENSMUST00000144417 ENSMUSP00000121882 TRANSLATION nonsense_mediated_decay - - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000043687 1190005I06Rik ENSMUST00000180677 ENSMUSP00000137752 TRANSLATION protein_coding - - 3 76.0 0.0 0.0 7.9 137.1 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000025810 Nrp1 ENSMUST00000026917 ENSMUSP00000026917 TRANSLATION protein_coding - CCDS22790.1 1 923.0 10.0 12.685 10.7 679.1 0.0 3,-2 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000025810 Nrp1 ENSMUST00000212746 - NO_TRANSLATION retained_intron ENSMUSG00000025810 Nrp1 ENSMUST00000212933 - NO_TRANSLATION retained_intron ENSMUSG00000025810 Nrp1 ENSMUST00000212833 - NO_TRANSLATION retained_intron ENSMUSG00000031708 Tecr ENSMUST00000212703 ENSMUSP00000148299 TRANSLATION protein_coding stop - 1 130.0 0.0 3.83 0.0 58.9 3.0 -4,-2 0.0011 1 -2.0 MINOR ENSMUSG00000031708 Tecr ENSMUST00000212652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031708 Tecr ENSMUST00000212990 ENSMUSP00000148721 TRANSLATION protein_coding - - 1 177.0 0.0 5.16 0.1 104.4 4.0 -4,-2 0.032 2 6.0 MINOR ENSMUSG00000031708 Tecr ENSMUST00000238861 ENSMUSP00000159114 TRANSLATION protein_coding stop - - 206.0 0.0 4.91 0.0 0.0 6.0 -4,-5 0.0038 9 -2.0 MINOR ENSMUSG00000031708 Tecr ENSMUST00000019382 ENSMUSP00000019382 TRANSLATION protein_coding - CCDS40403.1 1 308.0 0.0 9.07 34.0 104.4 9.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000031708 Tecr ENSMUST00000163837 ENSMUSP00000128329 TRANSLATION protein_coding - - 1 362.0 0.0 8.07 0.0 104.4 9.0 -4,-5 0.0289 12 10.002 MINOR ENSMUSG00000031708 Tecr ENSMUST00000165740 ENSMUSP00000131389 TRANSLATION protein_coding - CCDS52609.1 1 293.0 0.0 8.57 0.4 104.4 9.0 -4,-5 0.1225 12 10.998 MINOR ENSMUSG00000031708 Tecr ENSMUST00000212187 - NO_TRANSLATION retained_intron ENSMUSG00000031708 Tecr ENSMUST00000211972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031708 Tecr ENSMUST00000212136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031708 Tecr ENSMUST00000212285 - NO_TRANSLATION retained_intron ENSMUSG00000031708 Tecr ENSMUST00000212005 ENSMUSP00000148498 TRANSLATION nonsense_mediated_decay - - 1 107.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000031708 Tecr ENSMUST00000212630 ENSMUSP00000148368 TRANSLATION protein_coding stop - 3 92.0 0.0 2.58 0.0 0.0 5.0 -4,-5 0.0038 5 -2.0 MINOR ENSMUSG00000031708 Tecr ENSMUST00000238997 ENSMUSP00000159187 TRANSLATION protein_coding - - - 342.0 0.0 9.07 1.9 104.4 9.0 -4,-5 0.2031 11 12.108 MINOR ENSMUSG00000031708 Tecr ENSMUST00000212575 - NO_TRANSLATION retained_intron ENSMUSG00000031708 Tecr ENSMUST00000212418 - NO_TRANSLATION retained_intron ENSMUSG00000121579 SMIM46 ENSMUST00000249252 ENSMUSP00000159632 TRANSLATION protein_coding - - - 49.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000054648 Zfp869 ENSMUST00000238345 - NO_TRANSLATION retained_intron ENSMUSG00000054648 Zfp869 ENSMUST00000238408 ENSMUSP00000158615 TRANSLATION protein_coding - CCDS40360.1 - 529.0 51.0 3.75 0.4 300.5 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000054648 Zfp869 ENSMUST00000238657 ENSMUSP00000158663 TRANSLATION protein_coding - CCDS40360.1 - 529.0 51.0 3.75 0.4 300.5 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000054648 Zfp869 ENSMUST00000238201 ENSMUSP00000158726 TRANSLATION protein_coding start - - 77.0 0.0 1.0 0.0 46.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054648 Zfp869 ENSMUST00000238535 - NO_TRANSLATION retained_intron ENSMUSG00000054648 Zfp869 ENSMUST00000238753 ENSMUSP00000158685 TRANSLATION protein_coding - CCDS40360.1 - 529.0 51.0 3.75 0.4 300.5 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000054648 Zfp869 ENSMUST00000238460 ENSMUSP00000158648 TRANSLATION protein_coding stop - - 173.0 3.0 2.35 0.0 71.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054648 Zfp869 ENSMUST00000238367 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054648 Zfp869 ENSMUST00000080987 ENSMUSP00000079780 TRANSLATION protein_coding - CCDS40360.1 5 529.0 51.0 3.75 0.4 300.5 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000054648 Zfp869 ENSMUST00000238459 - NO_TRANSLATION retained_intron ENSMUSG00000054648 Zfp869 ENSMUST00000238761 ENSMUSP00000158604 TRANSLATION protein_coding stop - - 75.0 0.0 1.9 0.0 71.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054648 Zfp869 ENSMUST00000238418 ENSMUSP00000158786 TRANSLATION protein_coding - CCDS40360.1 - 529.0 51.0 3.75 0.4 300.5 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000054648 Zfp869 ENSMUST00000238292 ENSMUSP00000158827 TRANSLATION protein_coding - CCDS40360.1 - 529.0 51.0 3.75 0.4 300.5 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000054648 Zfp869 ENSMUST00000238311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031446 Cul4a ENSMUST00000125514 ENSMUSP00000123074 TRANSLATION nonsense_mediated_decay start - 1 87.0 0.0 2.0 0.0 45.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000031446 Cul4a ENSMUST00000121426 ENSMUSP00000112525 TRANSLATION protein_coding - - 1 265.0 0.0 6.2 0.0 164.8 0.0 -4,-5 0.0 7 0.0 MINOR ENSMUSG00000031446 Cul4a ENSMUST00000141315 - NO_TRANSLATION retained_intron ENSMUSG00000031446 Cul4a ENSMUST00000125646 - NO_TRANSLATION retained_intron ENSMUSG00000031446 Cul4a ENSMUST00000142700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031446 Cul4a ENSMUST00000135371 - NO_TRANSLATION retained_intron ENSMUSG00000031446 Cul4a ENSMUST00000139316 - NO_TRANSLATION retained_intron ENSMUSG00000031446 Cul4a ENSMUST00000016680 ENSMUSP00000016680 TRANSLATION protein_coding - CCDS52485.1 1 759.0 0.0 18.45 17.0 790.8 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000096914 Galntl6 ENSMUST00000204067 ENSMUSP00000145016 TRANSLATION protein_coding - - 1 66.0 0.0 1.33 0.0 36.5 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000096914 Galntl6 ENSMUST00000125865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096914 Galntl6 ENSMUST00000204128 ENSMUSP00000145321 TRANSLATION protein_coding - CCDS22318.2 5 601.0 21.0 11.28 21.7 198.0 2.0 -2,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000096914 Galntl6 ENSMUST00000146513 ENSMUSP00000118306 TRANSLATION nonsense_mediated_decay - - 2 51.0 0.0 0.0 0.0 0.0 2.0 -2,-5 0.0012 - -2.0 MINOR ENSMUSG00000096914 Galntl6 ENSMUST00000203398 ENSMUSP00000145298 TRANSLATION protein_coding stop - 5 63.0 0.0 0.2 0.0 0.0 2.0 -1,-5 0.0027 - -2.0 MINOR ENSMUSG00000096914 Galntl6 ENSMUST00000204937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096914 Galntl6 ENSMUST00000077447 - NO_TRANSLATION retained_intron ENSMUSG00000096914 Galntl6 ENSMUST00000098757 ENSMUSP00000096353 TRANSLATION protein_coding start - 5 417.0 18.0 8.33 1.0 151.4 0.0 -4,-6 0.0126 1 -2.0 MINOR ENSMUSG00000039720 Got1l1 ENSMUST00000038174 ENSMUSP00000041337 TRANSLATION protein_coding - CCDS22212.1 1 404.0 0.0 6.736 3.4 70.2 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000039720 Got1l1 ENSMUST00000209699 - NO_TRANSLATION retained_intron ENSMUSG00000039720 Got1l1 ENSMUST00000209299 ENSMUSP00000147871 TRANSLATION protein_coding stop - 3 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039720 Got1l1 ENSMUST00000209281 - NO_TRANSLATION retained_intron ENSMUSG00000039720 Got1l1 ENSMUST00000211002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063605 Ccdc102a ENSMUST00000162020 ENSMUSP00000124262 TRANSLATION protein_coding stop - 2 33.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000063605 Ccdc102a ENSMUST00000077955 ENSMUSP00000077107 TRANSLATION protein_coding - CCDS22551.1 1 549.0 0.0 0.0 10.3 50.1 0.0 -4,-7 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000031772 Cntnap4 ENSMUST00000118171 ENSMUSP00000112511 TRANSLATION protein_coding - - 5 1310.0 4.0 7.444 13.9 385.5 1.0 -1,-4 0.8279 18 16.0 ALTERNATIVE:1 ENSMUSG00000031772 Cntnap4 ENSMUST00000125976 - NO_TRANSLATION retained_intron ENSMUSG00000031772 Cntnap4 ENSMUST00000140753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031772 Cntnap4 ENSMUST00000127636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031772 Cntnap4 ENSMUST00000125196 - NO_TRANSLATION retained_intron ENSMUSG00000031772 Cntnap4 ENSMUST00000034225 ENSMUSP00000034225 TRANSLATION protein_coding - CCDS40482.1 1 1310.0 4.0 7.364 13.9 385.9 1.0 -1,-4 1.0 18 15.838 PRINCIPAL:4 ENSMUSG00000031642 Sh3rf1 ENSMUST00000209611 ENSMUSP00000148118 TRANSLATION protein_coding - - 1 836.0 8.0 2.8 0.0 161.7 0.0 -4,-5 0.0111 11 13.674 MINOR ENSMUSG00000031642 Sh3rf1 ENSMUST00000210210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031642 Sh3rf1 ENSMUST00000034060 ENSMUSP00000034060 TRANSLATION protein_coding - CCDS40348.1 1 891.0 8.0 3.44 3.7 212.5 0.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000031504 Rab20 ENSMUST00000033900 ENSMUSP00000033900 TRANSLATION protein_coding - CCDS22095.1 1 233.0 18.0 0.9 19.0 107.4 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000031520 Vegfc ENSMUST00000033919 ENSMUSP00000033919 TRANSLATION protein_coding - CCDS22306.1 1 415.0 0.0 2.0 0.0 122.9 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031520 Vegfc ENSMUST00000210831 ENSMUSP00000148210 TRANSLATION protein_coding - - 1 184.0 0.0 1.0 0.0 64.2 0.0 2,-3 0.0013 - 5.478 MINOR ENSMUSG00000031520 Vegfc ENSMUST00000209703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019362 D8Ertd738e ENSMUST00000019506 ENSMUSP00000019506 TRANSLATION protein_coding - CCDS40408.1 2 94.0 0.0 1.5 9.2 76.3 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000074443 Defa22 ENSMUST00000098897 ENSMUSP00000096496 TRANSLATION protein_coding - CCDS40267.1 1 93.0 0.0 1.0 0.1 97.9 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031837 Necab2 ENSMUST00000148328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031837 Necab2 ENSMUST00000098363 ENSMUSP00000095966 TRANSLATION protein_coding - CCDS22705.1 1 389.0 8.0 0.0 4.5 89.4 0.0 -4,0 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000031700 Gpt2 ENSMUST00000143659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031700 Gpt2 ENSMUST00000143846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031700 Gpt2 ENSMUST00000140189 - NO_TRANSLATION retained_intron ENSMUSG00000031700 Gpt2 ENSMUST00000132932 ENSMUSP00000115968 TRANSLATION nonsense_mediated_decay - - 1 158.0 1.0 2.998 0.0 0.0 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000031700 Gpt2 ENSMUST00000034136 ENSMUSP00000034136 TRANSLATION protein_coding - CCDS22499.1 1 522.0 17.0 10.3 10.0 113.9 0.0 -4,0 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000031671 Setd6 ENSMUST00000148727 ENSMUSP00000148785 TRANSLATION protein_coding start/stop - 1 128.0 6.0 0.7 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031671 Setd6 ENSMUST00000126888 - NO_TRANSLATION retained_intron ENSMUSG00000031671 Setd6 ENSMUST00000034096 ENSMUSP00000034096 TRANSLATION protein_coding - CCDS22566.1 1 473.0 15.0 7.25 0.1 128.4 0.0 -4,0 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000031671 Setd6 ENSMUST00000141900 ENSMUSP00000148466 TRANSLATION nonsense_mediated_decay start - 1 67.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031671 Setd6 ENSMUST00000154593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031671 Setd6 ENSMUST00000154052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046408 1700067K01Rik ENSMUST00000174570 ENSMUSP00000134486 TRANSLATION nonsense_mediated_decay - - 1 298.0 0.0 0.0 0.0 149.7 0.0 -3,-4 0.0017 - -2.0 MINOR ENSMUSG00000046408 1700067K01Rik ENSMUST00000060357 ENSMUSP00000062468 TRANSLATION protein_coding - - 1 356.0 0.0 0.0 4.2 212.8 0.0 -3,-4 1.0 - 4.0 PRINCIPAL:4 ENSMUSG00000046408 1700067K01Rik ENSMUST00000239176 ENSMUSP00000159263 TRANSLATION protein_coding - - - 355.0 0.0 0.0 4.2 212.8 0.0 -3,-4 0.9766 - 4.0 ALTERNATIVE:2 ENSMUSG00000046408 1700067K01Rik ENSMUST00000140120 - NO_TRANSLATION retained_intron ENSMUSG00000039396 Neil3 ENSMUST00000211404 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039396 Neil3 ENSMUST00000126157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039396 Neil3 ENSMUST00000135443 ENSMUSP00000121938 TRANSLATION protein_coding stop - 3 49.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039396 Neil3 ENSMUST00000153267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039396 Neil3 ENSMUST00000149053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039396 Neil3 ENSMUST00000047768 ENSMUSP00000041909 TRANSLATION protein_coding - CCDS22305.1 1 606.0 4.0 5.91 6.0 166.6 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000039396 Neil3 ENSMUST00000130656 - NO_TRANSLATION retained_intron ENSMUSG00000061847 Defb39 ENSMUST00000075504 ENSMUSP00000074947 TRANSLATION protein_coding - CCDS22130.1 1 74.0 0.0 1.0 0.1 47.1 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043243 Niban3 ENSMUST00000132891 - NO_TRANSLATION retained_intron ENSMUSG00000043243 Niban3 ENSMUST00000126559 ENSMUSP00000123621 TRANSLATION nonsense_mediated_decay start - 3 74.0 0.0 1.298 0.0 0.0 0.0 -4,-7 0.015 - -2.0 MINOR ENSMUSG00000043243 Niban3 ENSMUST00000141594 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043243 Niban3 ENSMUST00000124485 - NO_TRANSLATION retained_intron ENSMUSG00000043243 Niban3 ENSMUST00000125339 ENSMUSP00000119708 TRANSLATION protein_coding start - 5 154.0 0.0 0.8 0.0 0.0 0.0 -1,-7 0.0323 - -2.0 MINOR ENSMUSG00000043243 Niban3 ENSMUST00000125525 - NO_TRANSLATION retained_intron ENSMUSG00000043243 Niban3 ENSMUST00000143662 ENSMUSP00000123432 TRANSLATION protein_coding - CCDS52587.1 5 591.0 0.0 4.918 1.1 0.0 0.0 -4,0 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000043243 Niban3 ENSMUST00000127285 - NO_TRANSLATION retained_intron ENSMUSG00000050147 F2rl3 ENSMUST00000212755 - NO_TRANSLATION retained_intron ENSMUSG00000050147 F2rl3 ENSMUST00000058099 ENSMUSP00000054426 TRANSLATION protein_coding - CCDS22419.1 1 396.0 0.0 0.5 0.0 123.3 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000019139 Isyna1 ENSMUST00000209751 - NO_TRANSLATION retained_intron ENSMUSG00000019139 Isyna1 ENSMUST00000211773 - NO_TRANSLATION retained_intron ENSMUSG00000019139 Isyna1 ENSMUST00000210358 - NO_TRANSLATION retained_intron ENSMUSG00000019139 Isyna1 ENSMUST00000210878 - NO_TRANSLATION retained_intron ENSMUSG00000019139 Isyna1 ENSMUST00000210005 ENSMUSP00000148077 TRANSLATION protein_coding - CCDS22373.1 5 557.0 35.0 11.67 5.3 460.7 0.0 -4,-5 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000019139 Isyna1 ENSMUST00000211501 ENSMUSP00000147430 TRANSLATION protein_coding start/stop - 5 79.0 6.0 2.41 0.0 44.5 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000019139 Isyna1 ENSMUST00000019283 ENSMUSP00000019283 TRANSLATION protein_coding - CCDS22373.1 1 557.0 35.0 11.67 5.3 460.7 0.0 -4,-5 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000019139 Isyna1 ENSMUST00000211117 ENSMUSP00000148101 TRANSLATION protein_coding stop - 3 41.0 5.0 1.33 0.0 58.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000019139 Isyna1 ENSMUST00000209285 ENSMUSP00000147836 TRANSLATION nonsense_mediated_decay - - 5 146.0 6.0 4.41 0.0 108.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001909 Trmt1 ENSMUST00000176914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001909 Trmt1 ENSMUST00000148118 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000109768 ENSMUSP00000105390 TRANSLATION protein_coding - CCDS52619.1 1 656.0 24.0 4.926 0.0 521.1 0.0 -3,-1 0.5474 9 14.0 ALTERNATIVE:2 ENSMUSG00000001909 Trmt1 ENSMUST00000177531 ENSMUSP00000135540 TRANSLATION protein_coding stop - 5 173.0 7.0 0.0 0.0 66.5 0.0 -4,0 0.0 4 -2.0 MINOR ENSMUSG00000001909 Trmt1 ENSMUST00000177364 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000175884 ENSMUSP00000135680 TRANSLATION nonsense_mediated_decay start - 5 67.0 4.0 0.24 0.0 0.0 0.0 -3,-5 0.0 1 -2.0 MINOR ENSMUSG00000001909 Trmt1 ENSMUST00000177084 ENSMUSP00000135675 TRANSLATION protein_coding stop - 3 260.0 18.0 3.198 0.0 247.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000001909 Trmt1 ENSMUST00000128022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001909 Trmt1 ENSMUST00000128537 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000177286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001909 Trmt1 ENSMUST00000150085 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000131700 ENSMUSP00000122526 TRANSLATION nonsense_mediated_decay - - 5 114.0 2.0 0.0 0.0 36.7 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000001909 Trmt1 ENSMUST00000138300 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000136423 ENSMUSP00000134723 TRANSLATION protein_coding start - 3 205.0 4.0 0.0 0.0 0.0 0.0 -4,-7 0.0015 2 -2.0 MINOR ENSMUSG00000001909 Trmt1 ENSMUST00000127915 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000175870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001909 Trmt1 ENSMUST00000177260 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000175980 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000175784 ENSMUSP00000135273 TRANSLATION protein_coding stop - 5 221.0 14.0 1.35 0.0 126.7 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000001909 Trmt1 ENSMUST00000143427 ENSMUSP00000117140 TRANSLATION nonsense_mediated_decay - - 5 103.0 2.0 0.0 0.0 36.7 0.0 -3,-1 0.0 2 -2.0 MINOR ENSMUSG00000001909 Trmt1 ENSMUST00000001974 ENSMUSP00000001974 TRANSLATION protein_coding - CCDS40410.2 1 663.0 24.0 4.926 1.2 521.1 0.0 -4,0 1.0 9 15.0 PRINCIPAL:2 ENSMUSG00000001909 Trmt1 ENSMUST00000175767 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000152301 ENSMUSP00000116712 TRANSLATION protein_coding stop - 5 242.0 16.0 2.148 0.0 160.2 0.0 -4,0 0.0007 5 -2.0 MINOR ENSMUSG00000001909 Trmt1 ENSMUST00000109767 ENSMUSP00000105389 TRANSLATION protein_coding - CCDS40410.2 1 663.0 24.0 4.926 1.2 521.1 0.0 -4,0 1.0 9 15.0 PRINCIPAL:2 ENSMUSG00000001909 Trmt1 ENSMUST00000077990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001909 Trmt1 ENSMUST00000176053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001909 Trmt1 ENSMUST00000137953 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000175704 - NO_TRANSLATION retained_intron ENSMUSG00000001909 Trmt1 ENSMUST00000125370 ENSMUSP00000135510 TRANSLATION protein_coding - - 5 634.0 22.0 4.926 0.0 492.1 0.0 -4,0 0.1143 9 12.668 MINOR ENSMUSG00000001909 Trmt1 ENSMUST00000177423 ENSMUSP00000135327 TRANSLATION protein_coding stop - 5 262.0 18.0 2.948 0.0 218.2 0.0 -3,-1 0.0 5 -2.0 MINOR ENSMUSG00000002343 Armc6 ENSMUST00000136666 - NO_TRANSLATION retained_intron ENSMUSG00000002343 Armc6 ENSMUST00000139765 - NO_TRANSLATION retained_intron ENSMUSG00000002343 Armc6 ENSMUST00000019679 ENSMUSP00000019679 TRANSLATION protein_coding - CCDS40371.1 1 468.0 0.0 4.049 16.4 51.8 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000002343 Armc6 ENSMUST00000147387 - NO_TRANSLATION retained_intron ENSMUSG00000002343 Armc6 ENSMUST00000135931 - NO_TRANSLATION retained_intron ENSMUSG00000002343 Armc6 ENSMUST00000130319 ENSMUSP00000116811 TRANSLATION protein_coding stop - 5 120.0 0.0 1.149 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031512 Tex29 ENSMUST00000033909 ENSMUSP00000033909 TRANSLATION protein_coding - CCDS22100.1 1 186.0 0.0 0.75 0.0 145.8 2.0 -4,-7 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000031512 Tex29 ENSMUST00000144007 ENSMUSP00000148095 TRANSLATION nonsense_mediated_decay - - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031512 Tex29 ENSMUST00000132536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031512 Tex29 ENSMUST00000209704 ENSMUSP00000147894 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 0.0 0.0 96.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031512 Tex29 ENSMUST00000166638 ENSMUSP00000132090 TRANSLATION protein_coding - CCDS22100.1 5 186.0 0.0 0.75 0.0 145.8 2.0 -4,-7 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000031512 Tex29 ENSMUST00000209692 ENSMUSP00000148049 TRANSLATION protein_coding - - 5 204.0 0.0 0.75 0.0 131.3 2.0 -4,-2 0.0646 2 7.334 ALTERNATIVE:2 ENSMUSG00000070000 Fcho1 ENSMUST00000146100 ENSMUSP00000117606 TRANSLATION protein_coding - - 1 873.0 0.0 13.42 0.4 248.6 0.0 -4,-5 0.6636 11 12.0 PRINCIPAL:1 ENSMUSG00000070000 Fcho1 ENSMUST00000143699 - NO_TRANSLATION retained_intron ENSMUSG00000070000 Fcho1 ENSMUST00000153800 ENSMUSP00000116135 TRANSLATION protein_coding stop - 5 203.0 0.0 5.38 0.0 59.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000070000 Fcho1 ENSMUST00000093444 ENSMUSP00000091151 TRANSLATION protein_coding - CCDS52588.1 5 873.0 0.0 13.42 0.4 248.6 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000070000 Fcho1 ENSMUST00000125092 ENSMUSP00000123554 TRANSLATION protein_coding stop - 2 87.0 0.0 2.83 0.0 59.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000070000 Fcho1 ENSMUST00000141323 - NO_TRANSLATION retained_intron ENSMUSG00000070000 Fcho1 ENSMUST00000126455 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070000 Fcho1 ENSMUST00000136640 ENSMUSP00000119273 TRANSLATION nonsense_mediated_decay - - 1 304.0 0.0 7.49 0.0 59.6 0.0 -4,-5 0.0015 5 -2.0 MINOR ENSMUSG00000070000 Fcho1 ENSMUST00000149363 - NO_TRANSLATION retained_intron ENSMUSG00000070000 Fcho1 ENSMUST00000152742 - NO_TRANSLATION retained_intron ENSMUSG00000070000 Fcho1 ENSMUST00000123425 ENSMUSP00000123631 TRANSLATION nonsense_mediated_decay start - 3 84.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000070000 Fcho1 ENSMUST00000127005 - NO_TRANSLATION retained_intron ENSMUSG00000053790 Defb38 ENSMUST00000066416 ENSMUSP00000067553 TRANSLATION protein_coding - CCDS40248.1 1 63.0 0.0 1.0 0.4 49.7 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000030465 Psd3 ENSMUST00000120071 ENSMUSP00000112545 TRANSLATION protein_coding - CCDS52563.1 1 376.0 4.0 4.95 4.5 144.6 0.0 -4,-2 0.3865 15 7.098 MINOR ENSMUSG00000030465 Psd3 ENSMUST00000130307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030465 Psd3 ENSMUST00000212505 ENSMUSP00000148401 TRANSLATION protein_coding - - 5 1035.0 4.0 7.4 0.1 282.4 0.0 -4,-6 0.3177 26 16.0 MINOR ENSMUSG00000030465 Psd3 ENSMUST00000059374 ENSMUSP00000060306 TRANSLATION protein_coding - - 1 390.0 4.0 4.91 0.0 144.6 0.0 -4,-2 0.0008 8 5.02 MINOR ENSMUSG00000030465 Psd3 ENSMUST00000038959 ENSMUSP00000041339 TRANSLATION protein_coding - - 5 1005.0 4.0 7.4 0.1 277.1 0.0 -4,-5 0.1945 24 15.682 MINOR ENSMUSG00000030465 Psd3 ENSMUST00000178529 ENSMUSP00000148427 TRANSLATION protein_coding stop - 5 276.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0012 - -2.0 MINOR ENSMUSG00000030465 Psd3 ENSMUST00000185416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030465 Psd3 ENSMUST00000145595 - NO_TRANSLATION retained_intron ENSMUSG00000030465 Psd3 ENSMUST00000212994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030465 Psd3 ENSMUST00000150169 - NO_TRANSLATION retained_intron ENSMUSG00000030465 Psd3 ENSMUST00000146480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000030465 Psd3 ENSMUST00000093468 ENSMUSP00000091178 TRANSLATION protein_coding - CCDS22340.1 1 518.0 4.0 7.4 3.2 282.4 0.0 -4,-5 1.0 19 17.258 PRINCIPAL:1 ENSMUSG00000030465 Psd3 ENSMUST00000212960 ENSMUSP00000148783 TRANSLATION protein_coding - - 5 1289.0 4.0 7.4 0.1 282.4 0.0 -4,-6 0.3569 25 16.0 MINOR ENSMUSG00000030465 Psd3 ENSMUST00000093469 ENSMUSP00000091179 TRANSLATION protein_coding - - 5 1004.0 4.0 7.4 0.1 276.7 0.0 -4,-5 0.1967 24 15.658 MINOR ENSMUSG00000000739 Sult5a1 ENSMUST00000137998 ENSMUSP00000122415 TRANSLATION protein_coding stop - 3 218.0 10.0 4.83 0.0 187.5 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000000739 Sult5a1 ENSMUST00000126951 - NO_TRANSLATION retained_intron ENSMUSG00000000739 Sult5a1 ENSMUST00000152722 - NO_TRANSLATION retained_intron ENSMUSG00000000739 Sult5a1 ENSMUST00000146007 ENSMUSP00000116815 TRANSLATION nonsense_mediated_decay - - 3 58.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000739 Sult5a1 ENSMUST00000122819 ENSMUSP00000123501 TRANSLATION nonsense_mediated_decay - - 2 171.0 8.0 3.198 0.0 118.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000739 Sult5a1 ENSMUST00000000755 ENSMUSP00000000755 TRANSLATION protein_coding - CCDS22749.1 1 291.0 19.0 6.83 4.3 255.6 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000015016 Acsf3 ENSMUST00000015160 ENSMUSP00000015160 TRANSLATION protein_coding - CCDS40505.1 5 583.0 30.0 5.66 0.1 351.8 0.0 -3,0 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000015016 Acsf3 ENSMUST00000212903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015016 Acsf3 ENSMUST00000212781 ENSMUSP00000148725 TRANSLATION protein_coding - - 2 536.0 30.0 5.16 0.0 323.6 0.0 -3,0 0.026 18 15.306 MINOR ENSMUSG00000015016 Acsf3 ENSMUST00000212790 ENSMUSP00000148762 TRANSLATION protein_coding - CCDS40505.1 5 583.0 30.0 5.66 0.1 351.8 0.0 -3,0 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000003809 Gcdh ENSMUST00000128023 - NO_TRANSLATION retained_intron ENSMUSG00000003809 Gcdh ENSMUST00000109745 ENSMUSP00000105367 TRANSLATION protein_coding - - 5 438.0 28.0 9.198 24.2 256.4 0.0 -4,0 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000003809 Gcdh ENSMUST00000139180 - NO_TRANSLATION retained_intron ENSMUSG00000003809 Gcdh ENSMUST00000142748 ENSMUSP00000116584 TRANSLATION protein_coding stop - 2 75.0 0.0 0.948 0.0 0.0 0.0 -3,1 0.0 2 -2.0 MINOR ENSMUSG00000003809 Gcdh ENSMUST00000136462 - NO_TRANSLATION retained_intron ENSMUSG00000003809 Gcdh ENSMUST00000003907 ENSMUSP00000003907 TRANSLATION protein_coding - CCDS22482.2 1 447.0 28.0 9.198 0.1 256.4 0.0 -3,1 0.2593 12 18.0 MINOR ENSMUSG00000037296 Lsm1 ENSMUST00000210647 - NO_TRANSLATION retained_intron ENSMUSG00000037296 Lsm1 ENSMUST00000211168 ENSMUSP00000147832 TRANSLATION protein_coding - - 3 21.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000037296 Lsm1 ENSMUST00000038421 ENSMUSP00000041022 TRANSLATION protein_coding - CCDS22202.1 1 133.0 5.0 3.38 31.0 56.2 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000037296 Lsm1 ENSMUST00000211670 ENSMUSP00000147348 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 1.05 0.0 24.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057400 Ces1c ENSMUST00000034189 ENSMUSP00000034189 TRANSLATION protein_coding - CCDS22527.1 1 554.0 6.0 12.5 1.1 530.7 0.0 2,-2 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000057400 Ces1c ENSMUST00000211843 ENSMUSP00000148619 TRANSLATION protein_coding start/stop - 5 177.0 2.0 4.5 0.0 183.3 0.0 -4,-5 0.0002 3 -2.0 MINOR ENSMUSG00000057400 Ces1c ENSMUST00000212091 - NO_TRANSLATION retained_intron ENSMUSG00000031871 Cdh5 ENSMUST00000034339 ENSMUSP00000034339 TRANSLATION protein_coding - CCDS22572.1 1 784.0 44.0 7.95 6.4 400.5 0.0 1,-3 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000031871 Cdh5 ENSMUST00000209911 ENSMUSP00000147286 TRANSLATION protein_coding stop - 3 39.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.002 - -2.0 MINOR ENSMUSG00000094818 Defa32 ENSMUST00000084041 ENSMUSP00000081054 TRANSLATION protein_coding - CCDS52509.1 1 95.0 0.0 1.0 0.0 81.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074437 Defa29 ENSMUST00000098890 ENSMUSP00000096489 TRANSLATION protein_coding - CCDS40271.1 1 116.0 0.0 0.0 0.0 81.5 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000056228 Cars2 ENSMUST00000209236 - NO_TRANSLATION retained_intron ENSMUSG00000056228 Cars2 ENSMUST00000209676 ENSMUSP00000147495 TRANSLATION nonsense_mediated_decay - - 3 135.0 7.0 1.7 0.0 0.0 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000056228 Cars2 ENSMUST00000049461 ENSMUSP00000046453 TRANSLATION protein_coding - CCDS52478.1 1 552.0 18.0 6.847 2.9 44.0 0.0 -3,1 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000056228 Cars2 ENSMUST00000210478 ENSMUSP00000148102 TRANSLATION nonsense_mediated_decay - - 1 226.0 7.0 3.385 0.0 25.1 0.0 -3,1 0.001 - -2.0 MINOR ENSMUSG00000056228 Cars2 ENSMUST00000211161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056228 Cars2 ENSMUST00000211406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056228 Cars2 ENSMUST00000211172 - NO_TRANSLATION retained_intron ENSMUSG00000056228 Cars2 ENSMUST00000209218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056228 Cars2 ENSMUST00000211734 - NO_TRANSLATION retained_intron ENSMUSG00000056228 Cars2 ENSMUST00000211395 ENSMUSP00000148016 TRANSLATION protein_coding start - 5 128.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000056228 Cars2 ENSMUST00000210599 ENSMUSP00000147421 TRANSLATION nonsense_mediated_decay - - 1 270.0 9.0 4.31 0.0 24.9 0.0 -3,1 0.0015 2 -2.0 MINOR ENSMUSG00000056228 Cars2 ENSMUST00000210845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031839 Hsbp1 ENSMUST00000213037 - NO_TRANSLATION retained_intron ENSMUSG00000031839 Hsbp1 ENSMUST00000212468 ENSMUSP00000148390 TRANSLATION protein_coding - CCDS40492.1 2 76.0 0.0 2.15 20.8 98.0 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031839 Hsbp1 ENSMUST00000212795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031839 Hsbp1 ENSMUST00000034300 ENSMUSP00000034300 TRANSLATION protein_coding - CCDS40492.1 1 76.0 0.0 2.15 20.8 98.0 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000005699 Pard6a ENSMUST00000212972 - NO_TRANSLATION retained_intron ENSMUSG00000005699 Pard6a ENSMUST00000212634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005699 Pard6a ENSMUST00000212352 ENSMUSP00000148508 TRANSLATION protein_coding - - 2 329.0 0.0 2.8 0.0 76.5 0.0 -4,-1 0.0092 1 7.1 MINOR ENSMUSG00000005699 Pard6a ENSMUST00000093195 ENSMUSP00000090886 TRANSLATION protein_coding - CCDS22609.1 1 346.0 0.0 3.25 8.8 83.1 0.0 -4,-2 1.0 3 11.0 PRINCIPAL:3 ENSMUSG00000005699 Pard6a ENSMUST00000211888 ENSMUSP00000148821 TRANSLATION protein_coding - CCDS85600.1 1 316.0 0.0 2.25 0.0 39.7 0.0 -4,-2 0.01 3 4.668 MINOR ENSMUSG00000005699 Pard6a ENSMUST00000098444 ENSMUSP00000096043 TRANSLATION protein_coding - CCDS40462.1 2 330.0 0.0 2.8 0.0 76.5 0.0 -4,-1 0.0458 2 7.1 MINOR ENSMUSG00000005699 Pard6a ENSMUST00000212430 ENSMUSP00000148603 TRANSLATION protein_coding - CCDS85601.1 1 345.0 0.0 3.25 8.8 83.1 0.0 -4,-2 0.9942 2 11.0 ALTERNATIVE:1 ENSMUSG00000033249 Hsf4 ENSMUST00000036127 ENSMUSP00000048904 TRANSLATION protein_coding - CCDS57639.1 1 492.0 0.0 3.43 10.2 108.8 0.0 -4,-5 1.0 1 11.0 PRINCIPAL:4 ENSMUSG00000033249 Hsf4 ENSMUST00000174837 ENSMUSP00000134477 TRANSLATION protein_coding - - 5 416.0 0.0 3.43 1.2 108.8 0.0 -4,-5 0.2129 1 8.066 MINOR ENSMUSG00000033249 Hsf4 ENSMUST00000173640 ENSMUSP00000133532 TRANSLATION nonsense_mediated_decay - - 1 306.0 0.0 3.43 0.0 108.8 0.0 -4,-5 0.0145 1 -2.0 MINOR ENSMUSG00000033249 Hsf4 ENSMUST00000163734 ENSMUSP00000126278 TRANSLATION protein_coding - CCDS57640.1 1 432.0 0.0 1.33 1.7 0.0 0.0 -4,-7 0.0583 1 2.028 MINOR ENSMUSG00000033249 Hsf4 ENSMUST00000173102 ENSMUSP00000133879 TRANSLATION nonsense_mediated_decay - - 1 47.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033249 Hsf4 ENSMUST00000172525 ENSMUSP00000134206 TRANSLATION protein_coding - - 5 332.0 0.0 3.43 0.0 108.8 0.0 -4,-5 0.019 - 8.0 MINOR ENSMUSG00000033249 Hsf4 ENSMUST00000173859 ENSMUSP00000134213 TRANSLATION protein_coding - CCDS57638.1 1 462.0 0.0 3.43 8.0 108.8 0.0 -4,-5 0.9115 - 10.283 ALTERNATIVE:1 ENSMUSG00000047388 Atmin ENSMUST00000109099 ENSMUSP00000104727 TRANSLATION protein_coding - CCDS22694.2 1 818.0 10.0 1.066 0.0 0.0 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000031636 Pdlim3 ENSMUST00000209216 - NO_TRANSLATION retained_intron ENSMUSG00000031636 Pdlim3 ENSMUST00000211190 - NO_TRANSLATION retained_intron ENSMUSG00000031636 Pdlim3 ENSMUST00000210422 ENSMUSP00000148113 TRANSLATION protein_coding - - 5 364.0 9.0 4.49 24.2 195.9 0.0 -4,-6 0.8229 14 16.88 MINOR ENSMUSG00000031636 Pdlim3 ENSMUST00000034053 ENSMUSP00000034053 TRANSLATION protein_coding - CCDS22281.1 1 316.0 9.0 4.49 33.2 188.6 0.0 -4,-7 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000057060 Slc35f3 ENSMUST00000108759 ENSMUSP00000104390 TRANSLATION protein_coding - CCDS40520.1 1 421.0 0.0 5.1 20.5 28.0 11.0 -3,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000057060 Slc35f3 ENSMUST00000238518 ENSMUSP00000158727 TRANSLATION protein_coding - - - 490.0 0.0 5.1 12.8 28.0 11.0 -4,-2 0.7297 2 14.42 MINOR ENSMUSG00000057060 Slc35f3 ENSMUST00000238386 ENSMUSP00000158619 TRANSLATION protein_coding - - - 327.0 0.0 4.5 0.0 28.0 9.0 -4,-2 0.0364 1 10.8 MINOR ENSMUSG00000042812 Foxf1 ENSMUST00000181504 ENSMUSP00000137662 TRANSLATION protein_coding - CCDS22722.2 1 378.0 0.0 0.5 7.3 125.7 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000085795 Zfp703 ENSMUST00000209610 ENSMUSP00000148264 TRANSLATION nonsense_mediated_decay - - 2 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000085795 Zfp703 ENSMUST00000209411 ENSMUSP00000148203 TRANSLATION protein_coding stop - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000085795 Zfp703 ENSMUST00000154256 ENSMUSP00000128757 TRANSLATION protein_coding - CCDS52532.1 1 594.0 4.0 0.0 3.6 74.6 0.0 -4,-5 1.0 6 11.0 PRINCIPAL:1 ENSMUSG00000085795 Zfp703 ENSMUST00000127097 ENSMUSP00000132801 TRANSLATION protein_coding - CCDS52531.1 2 127.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0287 - 0.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000238870 ENSMUSP00000159093 TRANSLATION protein_coding stop - - 54.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000162531 ENSMUSP00000125610 TRANSLATION protein_coding stop - 5 1094.0 0.0 7.61 0.0 245.6 0.0 -4,-2 0.1814 21 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000162602 ENSMUSP00000125450 TRANSLATION protein_coding stop - 5 1024.0 0.0 8.31 0.0 245.6 0.0 -4,-2 0.2746 20 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000161277 ENSMUSP00000124789 TRANSLATION protein_coding start/stop - 5 919.0 0.0 6.985 0.0 166.9 0.0 -4,-5 0.0088 16 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000161348 ENSMUSP00000123951 TRANSLATION protein_coding start - 5 269.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000162536 ENSMUSP00000125212 TRANSLATION protein_coding - - 5 1289.0 0.0 8.185 0.0 245.6 0.0 -4,-2 0.3017 23 7.748 ALTERNATIVE:2 ENSMUSG00000025812 Pard3 ENSMUST00000160717 ENSMUSP00000125612 TRANSLATION protein_coding - CCDS40523.1 1 606.0 0.0 4.73 1.0 109.4 0.0 -4,-7 0.0845 16 1.142 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000026921 ENSMUSP00000026921 TRANSLATION protein_coding - CCDS80946.1 1 1319.0 0.0 8.31 0.4 245.6 0.0 -4,-2 0.7516 25 8.0 PRINCIPAL:3 ENSMUSG00000025812 Pard3 ENSMUST00000162176 ENSMUSP00000123944 TRANSLATION protein_coding start/stop - 1 422.0 0.0 4.598 0.0 109.4 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000160272 ENSMUSP00000125453 TRANSLATION protein_coding - CCDS80945.1 1 1334.0 0.0 8.31 0.4 245.6 0.0 -4,-2 1.0 24 8.0 ALTERNATIVE:2 ENSMUSG00000025812 Pard3 ENSMUST00000162727 ENSMUSP00000124359 TRANSLATION protein_coding start - 2 116.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000161355 ENSMUSP00000125064 TRANSLATION protein_coding stop - 5 990.0 0.0 7.81 0.0 245.6 0.0 -4,-2 0.1454 19 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000079777 ENSMUSP00000078710 TRANSLATION protein_coding - CCDS22789.1 5 896.0 0.0 5.98 1.7 109.4 0.0 -4,-7 0.2543 19 3.48 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000160593 - NO_TRANSLATION retained_intron ENSMUSG00000025812 Pard3 ENSMUST00000162309 ENSMUSP00000124282 TRANSLATION protein_coding - CCDS22788.1 1 1333.0 0.0 8.185 0.4 245.6 0.0 -4,-2 0.9394 24 7.748 ALTERNATIVE:2 ENSMUSG00000025812 Pard3 ENSMUST00000163021 - NO_TRANSLATION retained_intron ENSMUSG00000025812 Pard3 ENSMUST00000162665 ENSMUSP00000124718 TRANSLATION protein_coding start - 1 1324.0 0.0 7.81 0.0 245.6 0.0 -4,-7 0.2971 23 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000160581 ENSMUSP00000124141 TRANSLATION protein_coding start/stop - 5 984.0 0.0 7.61 0.0 245.6 0.0 -4,-7 0.102 18 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000159940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025812 Pard3 ENSMUST00000159511 ENSMUSP00000124441 TRANSLATION protein_coding start/stop - 3 102.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000162035 - NO_TRANSLATION retained_intron ENSMUSG00000025812 Pard3 ENSMUST00000159141 ENSMUSP00000124733 TRANSLATION nonsense_mediated_decay - - 2 59.0 0.0 1.0 0.0 68.9 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000160766 ENSMUSP00000124533 TRANSLATION protein_coding - - 5 1247.0 0.0 7.61 0.0 245.6 0.0 -4,-2 0.2121 21 6.602 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000163002 - NO_TRANSLATION retained_intron ENSMUSG00000025812 Pard3 ENSMUST00000159537 ENSMUSP00000124934 TRANSLATION protein_coding stop - 5 943.0 0.0 7.985 0.0 245.6 0.0 -4,-2 0.1295 18 -2.0 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000162456 ENSMUSP00000124162 TRANSLATION protein_coding - CCDS22789.1 1 896.0 0.0 5.98 1.7 109.4 0.0 -4,-7 0.2543 19 3.48 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000108752 ENSMUSP00000104383 TRANSLATION protein_coding - CCDS40523.1 5 606.0 0.0 4.73 1.0 109.4 0.0 -4,-7 0.0845 16 1.142 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000162907 ENSMUSP00000124319 TRANSLATION protein_coding - CCDS52712.1 1 741.0 0.0 7.06 0.1 245.6 0.0 -4,-2 0.2328 18 5.498 MINOR ENSMUSG00000025812 Pard3 ENSMUST00000159818 ENSMUSP00000124339 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 1.0 0.0 67.7 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000031824 6430548M08Rik ENSMUST00000108948 ENSMUSP00000104576 TRANSLATION protein_coding - CCDS52686.1 1 297.0 0.0 0.0 2.1 0.0 0.0 -4,-5 0.1929 8 0.344 MINOR ENSMUSG00000031824 6430548M08Rik ENSMUST00000212268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031824 6430548M08Rik ENSMUST00000212474 - NO_TRANSLATION retained_intron ENSMUSG00000031824 6430548M08Rik ENSMUST00000153725 ENSMUSP00000114976 TRANSLATION protein_coding stop - 5 227.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0221 6 -2.0 MINOR ENSMUSG00000031824 6430548M08Rik ENSMUST00000034281 ENSMUSP00000034281 TRANSLATION protein_coding - CCDS22716.1 1 407.0 0.0 0.0 12.8 0.0 0.0 -4,-5 0.9743 14 3.688 ALTERNATIVE:1 ENSMUSG00000031824 6430548M08Rik ENSMUST00000132229 ENSMUSP00000117269 TRANSLATION protein_coding stop - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.011 - -2.0 MINOR ENSMUSG00000031824 6430548M08Rik ENSMUST00000144682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031824 6430548M08Rik ENSMUST00000108950 ENSMUSP00000104578 TRANSLATION protein_coding - CCDS22716.1 1 407.0 0.0 0.0 12.8 0.0 0.0 -4,-5 0.9743 14 3.688 ALTERNATIVE:1 ENSMUSG00000031824 6430548M08Rik ENSMUST00000108951 ENSMUSP00000104579 TRANSLATION protein_coding - CCDS52685.1 1 397.0 0.0 0.0 13.8 0.0 0.0 -4,-5 1.0 14 4.0 PRINCIPAL:4 ENSMUSG00000033596 Rfwd3 ENSMUST00000038739 ENSMUSP00000043780 TRANSLATION protein_coding - CCDS22672.1 1 774.0 7.0 1.384 0.0 37.8 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000033596 Rfwd3 ENSMUST00000212958 - NO_TRANSLATION retained_intron ENSMUSG00000065952 Rps23rg1 ENSMUST00000136592 ENSMUSP00000123235 TRANSLATION protein_coding - CCDS52468.1 1 141.0 0.0 0.0 0.0 0.0 1.0 -4,-2 0.2268 - 0.0 ALTERNATIVE:2 ENSMUSG00000065952 Rps23rg1 ENSMUST00000153341 - NO_TRANSLATION retained_intron ENSMUSG00000065952 Rps23rg1 ENSMUST00000151633 ENSMUSP00000119487 TRANSLATION protein_coding - - 1 117.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.5694 - 0.0 PRINCIPAL:2 ENSMUSG00000065952 Rps23rg1 ENSMUST00000086479 ENSMUSP00000136628 TRANSLATION protein_coding - CCDS52468.1 5 141.0 0.0 0.0 0.0 0.0 1.0 -4,-2 0.2268 - 0.0 ALTERNATIVE:2 ENSMUSG00000065952 Rps23rg1 ENSMUST00000138454 - NO_TRANSLATION retained_intron ENSMUSG00000031548 Sfrp1 ENSMUST00000033952 ENSMUSP00000033952 TRANSLATION protein_coding - CCDS22191.1 1 314.0 0.0 0.699 6.5 153.0 0.0 1,-3 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000022322 Shcbp1 ENSMUST00000207725 - NO_TRANSLATION retained_intron ENSMUSG00000022322 Shcbp1 ENSMUST00000207876 ENSMUSP00000146454 TRANSLATION protein_coding start/stop - 3 207.0 0.0 0.0 0.0 27.8 0.0 -4,-5 0.0011 3 -2.0 MINOR ENSMUSG00000022322 Shcbp1 ENSMUST00000022945 ENSMUSP00000022945 TRANSLATION protein_coding - CCDS22088.1 1 668.0 0.0 0.0 3.2 48.4 0.0 -4,-5 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000022322 Shcbp1 ENSMUST00000207262 ENSMUSP00000146339 TRANSLATION protein_coding start/stop - 3 170.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022322 Shcbp1 ENSMUST00000208381 - NO_TRANSLATION retained_intron ENSMUSG00000022322 Shcbp1 ENSMUST00000207665 - NO_TRANSLATION retained_intron ENSMUSG00000022322 Shcbp1 ENSMUST00000208856 - NO_TRANSLATION retained_intron ENSMUSG00000031620 Iqcm ENSMUST00000212704 ENSMUSP00000148495 TRANSLATION protein_coding - CCDS52603.1 1 489.0 0.0 0.0 2.5 0.0 0.0 -4,-5 0.9438 - 1.0 PRINCIPAL:1 ENSMUSG00000031620 Iqcm ENSMUST00000034033 ENSMUSP00000034033 TRANSLATION protein_coding - CCDS52603.1 1 489.0 0.0 0.0 2.5 0.0 0.0 -4,-5 0.9438 - 1.0 PRINCIPAL:1 ENSMUSG00000031620 Iqcm ENSMUST00000121983 ENSMUSP00000112901 TRANSLATION protein_coding - CCDS52603.1 1 489.0 0.0 0.0 2.5 0.0 0.0 -4,-5 0.9438 - 1.0 PRINCIPAL:1 ENSMUSG00000071089 Trim75 ENSMUST00000095295 ENSMUSP00000092932 TRANSLATION protein_coding - CCDS22330.1 1 467.0 12.0 1.0 0.0 177.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000071089 Trim75 ENSMUST00000210982 ENSMUSP00000148052 TRANSLATION protein_coding stop - 2 26.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000109764 Klkb1 ENSMUST00000026907 ENSMUSP00000026907 TRANSLATION protein_coding - CCDS22275.1 1 638.0 5.0 12.8 5.0 381.9 0.0 0,-5 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000109061 Gm49320 ENSMUST00000145165 ENSMUSP00000117418 TRANSLATION nonsense_mediated_decay,RT - - 1 535.0 18.0 8.0 0.0 190.6 0.0 -4,-6 0.7682 - -2.0 PRINCIPAL:1 ENSMUSG00000001300 Efnb2 ENSMUST00000001319 ENSMUSP00000001319 TRANSLATION protein_coding - CCDS22090.1 1 336.0 0.0 3.6 6.4 170.7 1.0 0,0 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000001300 Efnb2 ENSMUST00000152698 ENSMUSP00000116027 TRANSLATION protein_coding start/stop - 3 218.0 0.0 1.0 0.0 59.6 1.0 -4,-5 0.0016 5 -2.0 MINOR ENSMUSG00000001300 Efnb2 ENSMUST00000209169 - NO_TRANSLATION retained_intron ENSMUSG00000031903 Pla2g15 ENSMUST00000212963 ENSMUSP00000148565 TRANSLATION protein_coding - - 1 236.0 0.0 3.2 1.1 88.9 0.0 0,-4 0.0478 3 0.042 MINOR ENSMUSG00000031903 Pla2g15 ENSMUST00000212059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031903 Pla2g15 ENSMUST00000212116 - NO_TRANSLATION retained_intron ENSMUSG00000031903 Pla2g15 ENSMUST00000034377 ENSMUSP00000034377 TRANSLATION protein_coding - CCDS22630.1 1 412.0 0.0 7.2 3.4 273.0 0.0 0,-4 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000039633 Lonrf1 ENSMUST00000065297 ENSMUSP00000066403 TRANSLATION protein_coding - CCDS40321.1 5 837.0 16.0 6.0 0.0 151.5 0.0 -4,-2 0.4417 1 14.0 ALTERNATIVE:2 ENSMUSG00000039633 Lonrf1 ENSMUST00000239119 ENSMUSP00000158932 TRANSLATION protein_coding - - - 762.0 16.0 6.0 1.4 151.5 0.0 -4,-7 0.8286 1 15.0 PRINCIPAL:2 ENSMUSG00000031812 Map1lc3b ENSMUST00000180548 - NO_TRANSLATION retained_intron ENSMUSG00000031812 Map1lc3b ENSMUST00000181948 ENSMUSP00000137754 TRANSLATION protein_coding - - 2 160.0 0.0 3.245 0.0 120.6 0.0 -4,-7 0.0185 1 10.392 MINOR ENSMUSG00000031812 Map1lc3b ENSMUST00000034270 ENSMUSP00000034270 TRANSLATION protein_coding - CCDS22726.1 1 125.0 0.0 3.08 24.3 147.4 0.0 -4,-7 1.0 1 15.67 PRINCIPAL:1 ENSMUSG00000031812 Map1lc3b ENSMUST00000181521 ENSMUSP00000137996 TRANSLATION protein_coding - - 3 66.0 0.0 1.33 0.0 81.4 0.0 -4,-2 0.0 - 4.212 MINOR ENSMUSG00000031812 Map1lc3b ENSMUST00000181826 ENSMUSP00000148359 TRANSLATION protein_coding - - - 173.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000031603 Fgf20 ENSMUST00000034014 ENSMUSP00000034014 TRANSLATION protein_coding - CCDS52544.1 1 211.0 7.0 2.8 31.4 160.1 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000031603 Fgf20 ENSMUST00000118639 ENSMUSP00000112756 TRANSLATION protein_coding - - 3 157.0 7.0 2.4 0.0 116.1 0.0 -4,-1 0.0007 - 14.502 MINOR ENSMUSG00000044676 Zfp612 ENSMUST00000212754 ENSMUSP00000148717 TRANSLATION protein_coding - CCDS22660.1 1 672.0 64.0 1.0 0.4 346.0 0.0 -4,-7 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000044676 Zfp612 ENSMUST00000058804 ENSMUSP00000062474 TRANSLATION protein_coding - - 1 633.0 64.0 1.0 0.4 261.6 0.0 -4,-5 0.1085 3 12.936 MINOR ENSMUSG00000044676 Zfp612 ENSMUST00000213084 - NO_TRANSLATION retained_intron ENSMUSG00000034799 Unc13a ENSMUST00000030170 ENSMUSP00000030170 TRANSLATION protein_coding - CCDS22402.2 5 1712.0 11.0 26.85 3.3 526.3 0.0 -4,-5 1.0 30 14.958 PRINCIPAL:4 ENSMUSG00000034799 Unc13a ENSMUST00000175780 - NO_TRANSLATION retained_intron ENSMUSG00000034799 Unc13a ENSMUST00000177517 ENSMUSP00000135189 TRANSLATION protein_coding - - 5 1731.0 11.0 26.85 3.4 526.3 0.0 -4,-5 0.9533 30 15.0 ALTERNATIVE:2 ENSMUSG00000034799 Unc13a ENSMUST00000175909 ENSMUSP00000135528 TRANSLATION nonsense_mediated_decay start - 5 17.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0236 - -2.0 MINOR ENSMUSG00000034799 Unc13a ENSMUST00000176127 ENSMUSP00000135578 TRANSLATION protein_coding start/stop - 5 241.0 0.0 6.75 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000034799 Unc13a ENSMUST00000176777 - NO_TRANSLATION retained_intron ENSMUSG00000034799 Unc13a ENSMUST00000176426 ENSMUSP00000135032 TRANSLATION protein_coding start/stop - 5 254.0 8.0 2.4 0.0 45.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000034799 Unc13a ENSMUST00000177032 - NO_TRANSLATION retained_intron ENSMUSG00000054408 Spcs3 ENSMUST00000067476 ENSMUSP00000136527 TRANSLATION protein_coding - CCDS57621.1 1 180.0 0.0 4.5 33.8 193.8 0.0 0,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000031734 Irx3 ENSMUST00000175795 ENSMUSP00000135488 TRANSLATION protein_coding - CCDS57631.1 1 507.0 0.0 0.0 6.4 56.8 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000031734 Irx3 ENSMUST00000093312 ENSMUSP00000091002 TRANSLATION protein_coding - CCDS57630.1 1 522.0 0.0 0.0 0.1 56.8 0.0 -4,-6 0.2311 - 6.0 MINOR ENSMUSG00000031640 Gm45753 ENSMUST00000116473 ENSMUSP00000112174 TRANSLATION nonsense_mediated_decay,RT start - 2 86.0 10.0 1.6 0.0 74.4 0.0 -4,-7 0.7706 - -2.0 PRINCIPAL:1 ENSMUSG00000031488 Rab11fip1 ENSMUST00000033878 ENSMUSP00000033878 TRANSLATION protein_coding - CCDS52534.1 1 645.0 0.0 1.4 1.5 127.0 0.0 -4,-2 1.0 14 9.0 PRINCIPAL:2 ENSMUSG00000031488 Rab11fip1 ENSMUST00000054212 ENSMUSP00000058042 TRANSLATION protein_coding - CCDS40311.1 5 1166.0 0.0 1.4 0.0 127.0 0.0 -4,-2 0.683 19 8.0 ALTERNATIVE:2 ENSMUSG00000031488 Rab11fip1 ENSMUST00000210187 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031488 Rab11fip1 ENSMUST00000210919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031488 Rab11fip1 ENSMUST00000209377 ENSMUSP00000147543 TRANSLATION protein_coding - - 5 1127.0 0.0 0.4 0.0 64.7 0.0 -4,-2 0.015 18 2.716 MINOR ENSMUSG00000031488 Rab11fip1 ENSMUST00000211646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071302 Zfp1006 ENSMUST00000188757 ENSMUSP00000140555 TRANSLATION protein_coding - - 2 88.0 2.0 2.25 0.0 69.3 0.0 -4,-5 0.0 - 4.002 MINOR ENSMUSG00000071302 Zfp1006 ENSMUST00000189965 ENSMUSP00000140304 TRANSLATION protein_coding stop - 3 82.0 2.0 2.25 0.0 69.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071302 Zfp1006 ENSMUST00000079272 ENSMUSP00000078254 TRANSLATION protein_coding start - 5 87.0 2.0 2.25 0.0 69.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071302 Zfp1006 ENSMUST00000190157 ENSMUSP00000140736 TRANSLATION protein_coding - CCDS80947.1 1 88.0 2.0 2.25 0.0 69.3 0.0 -4,-5 0.0028 - 4.002 MINOR ENSMUSG00000071302 Zfp1006 ENSMUST00000191043 ENSMUSP00000139392 TRANSLATION protein_coding - - 2 95.0 0.0 1.75 0.0 69.3 0.0 -4,-5 0.0 - 3.0 MINOR ENSMUSG00000071302 Zfp1006 ENSMUST00000186619 ENSMUSP00000140654 TRANSLATION protein_coding - - 2 410.0 49.0 3.25 0.4 297.4 0.0 -4,-5 0.7972 2 18.0 PRINCIPAL:1 ENSMUSG00000031594 Fgl1 ENSMUST00000134510 - NO_TRANSLATION retained_intron ENSMUSG00000031594 Fgl1 ENSMUST00000034003 ENSMUSP00000034003 TRANSLATION protein_coding - CCDS22260.1 1 314.0 6.0 4.87 9.1 270.1 0.0 3,-1 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000095066 Defa20 ENSMUST00000084042 ENSMUSP00000081055 TRANSLATION protein_coding - CCDS40273.1 1 95.0 0.0 1.0 0.0 81.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000106824 Potefam3d ENSMUST00000201500 ENSMUSP00000144181 TRANSLATION protein_coding - - 1 350.0 0.0 3.7 0.0 94.5 0.0 -4,-6 0.7485 - 12.0 PRINCIPAL:1 ENSMUSG00000031986 Sprtn ENSMUST00000034467 ENSMUSP00000034467 TRANSLATION protein_coding - CCDS52705.1 1 497.0 4.0 3.5 0.1 113.2 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000031986 Sprtn ENSMUST00000212724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059897 Zfp930 ENSMUST00000110216 ENSMUSP00000105845 TRANSLATION protein_coding start - 5 440.0 51.0 3.1 0.0 378.7 0.0 -4,-5 0.4107 1 -2.0 MINOR ENSMUSG00000059897 Zfp930 ENSMUST00000212312 ENSMUSP00000148604 TRANSLATION protein_coding - - 2 92.0 0.0 2.0 0.0 73.8 0.0 -4,-5 0.0 - 3.798 MINOR ENSMUSG00000059897 Zfp930 ENSMUST00000212681 ENSMUSP00000148587 TRANSLATION protein_coding - CCDS85546.1 2 441.0 51.0 3.1 0.0 378.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000059897 Zfp930 ENSMUST00000212020 - NO_TRANSLATION retained_intron ENSMUSG00000034880 Mrpl34 ENSMUST00000048914 ENSMUSP00000044497 TRANSLATION protein_coding - CCDS40383.1 1 92.0 0.0 1.0 8.2 64.4 0.0 -4,0 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000034330 Plcg2 ENSMUST00000081232 ENSMUSP00000079991 TRANSLATION protein_coding - CCDS22700.1 1 1265.0 10.0 18.619 10.7 612.1 0.0 -4,-5 1.0 38 21.0 PRINCIPAL:1 ENSMUSG00000051671 Coa6 ENSMUST00000059093 ENSMUSP00000058279 TRANSLATION protein_coding - CCDS52709.1 1 79.0 0.0 2.0 27.9 65.1 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000051671 Coa6 ENSMUST00000211868 ENSMUSP00000148765 TRANSLATION protein_coding - CCDS52709.1 1 79.0 0.0 2.0 27.9 65.1 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000048516 Adam26a ENSMUST00000049577 ENSMUSP00000058256 TRANSLATION protein_coding - CCDS22269.1 1 697.0 20.0 0.32 0.0 412.3 0.0 3,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000015013 Trappc2l ENSMUST00000211904 - NO_TRANSLATION retained_intron ENSMUSG00000015013 Trappc2l ENSMUST00000212477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015013 Trappc2l ENSMUST00000015157 ENSMUSP00000015157 TRANSLATION protein_coding - CCDS22742.1 1 139.0 0.0 3.33 29.9 120.8 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000017765 Slc12a4 ENSMUST00000116429 ENSMUSP00000112130 TRANSLATION protein_coding - CCDS22623.1 1 1085.0 0.0 18.76 12.5 382.2 9.0 -4,-5 0.9574 10 14.36 MINOR ENSMUSG00000017765 Slc12a4 ENSMUST00000132231 ENSMUSP00000121018 TRANSLATION protein_coding start/stop - 3 171.0 0.0 2.12 0.0 63.6 2.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000017765 Slc12a4 ENSMUST00000034370 ENSMUSP00000034370 TRANSLATION protein_coding - CCDS57642.1 1 1087.0 0.0 18.76 20.5 382.2 9.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000017765 Slc12a4 ENSMUST00000141326 - NO_TRANSLATION retained_intron ENSMUSG00000017765 Slc12a4 ENSMUST00000143381 - NO_TRANSLATION retained_intron ENSMUSG00000061048 Cdh3 ENSMUST00000080797 ENSMUSP00000079613 TRANSLATION protein_coding - CCDS22637.1 1 822.0 52.0 11.4 1.1 388.0 0.0 4,-1 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000025519 Tktl2 ENSMUST00000002025 ENSMUSP00000002025 TRANSLATION protein_coding - CCDS22334.1 - 627.0 16.0 1.0 12.6 294.1 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000025519 Tktl2 ENSMUST00000183187 ENSMUSP00000138388 TRANSLATION protein_coding - CCDS22334.1 1 627.0 16.0 1.0 12.6 294.1 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000031570 Plpp5 ENSMUST00000138548 ENSMUSP00000147452 TRANSLATION nonsense_mediated_decay start - 1 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031570 Plpp5 ENSMUST00000133117 ENSMUSP00000147440 TRANSLATION nonsense_mediated_decay - - 1 158.0 0.0 4.905 0.0 45.2 6.0 0,-3 0.005 2 -2.0 MINOR ENSMUSG00000031570 Plpp5 ENSMUST00000209843 - NO_TRANSLATION retained_intron ENSMUSG00000031570 Plpp5 ENSMUST00000068916 ENSMUSP00000067035 TRANSLATION protein_coding - CCDS40306.1 1 260.0 4.0 7.04 2.2 111.3 11.0 0,-3 1.0 2 17.0 PRINCIPAL:1 ENSMUSG00000031570 Plpp5 ENSMUST00000209373 - NO_TRANSLATION retained_intron ENSMUSG00000031570 Plpp5 ENSMUST00000124764 ENSMUSP00000123420 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 1.5 0.0 0.0 3.0 0,-3 0.0019 1 -2.0 MINOR ENSMUSG00000031570 Plpp5 ENSMUST00000146762 - NO_TRANSLATION retained_intron ENSMUSG00000031570 Plpp5 ENSMUST00000139836 ENSMUSP00000122437 TRANSLATION protein_coding - CCDS80868.1 1 226.0 3.0 5.74 0.0 82.7 10.0 0,-3 0.0303 2 10.686 MINOR ENSMUSG00000031570 Plpp5 ENSMUST00000138879 - NO_TRANSLATION retained_intron ENSMUSG00000031570 Plpp5 ENSMUST00000145678 ENSMUSP00000120448 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 1.5 0.0 0.0 3.0 0,-3 0.0019 - -2.0 MINOR ENSMUSG00000031570 Plpp5 ENSMUST00000139120 - NO_TRANSLATION retained_intron ENSMUSG00000031570 Plpp5 ENSMUST00000209483 - NO_TRANSLATION retained_intron ENSMUSG00000031570 Plpp5 ENSMUST00000210624 - NO_TRANSLATION retained_intron ENSMUSG00000031570 Plpp5 ENSMUST00000210629 ENSMUSP00000147277 TRANSLATION protein_coding start - 3 151.0 3.0 3.575 0.0 82.7 5.0 -1,-4 0.0049 - -2.0 MINOR ENSMUSG00000031570 Plpp5 ENSMUST00000209375 - NO_TRANSLATION retained_intron ENSMUSG00000006519 Cyba ENSMUST00000017604 ENSMUSP00000017604 TRANSLATION protein_coding - CCDS22737.1 1 192.0 0.0 4.15 24.9 354.0 4.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000006519 Cyba ENSMUST00000212600 ENSMUSP00000148320 TRANSLATION protein_coding - CCDS85623.1 1 164.0 0.0 3.4 0.0 269.5 4.0 -4,-5 0.018 2 5.43 MINOR ENSMUSG00000006519 Cyba ENSMUST00000212822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053693 Mast1 ENSMUST00000109741 ENSMUSP00000105363 TRANSLATION protein_coding - CCDS40415.1 1 1570.0 18.0 5.885 5.3 692.7 0.0 -4,-6 1.0 25 20.0 PRINCIPAL:1 ENSMUSG00000053693 Mast1 ENSMUST00000130923 - NO_TRANSLATION retained_intron ENSMUSG00000053693 Mast1 ENSMUST00000153000 - NO_TRANSLATION retained_intron ENSMUSG00000053693 Mast1 ENSMUST00000128356 - NO_TRANSLATION retained_intron ENSMUSG00000053693 Mast1 ENSMUST00000119820 ENSMUSP00000113547 TRANSLATION protein_coding - - 5 658.0 18.0 4.915 0.0 648.5 0.0 -4,-6 0.0216 6 13.41 MINOR ENSMUSG00000053693 Mast1 ENSMUST00000138221 - NO_TRANSLATION retained_intron ENSMUSG00000025809 Itgb1 ENSMUST00000090006 ENSMUSP00000087457 TRANSLATION protein_coding - CCDS22791.1 1 798.0 11.0 12.38 28.7 606.9 1.0 3,-2 1.0 27 22.0 PRINCIPAL:1 ENSMUSG00000025809 Itgb1 ENSMUST00000124826 ENSMUSP00000120026 TRANSLATION nonsense_mediated_decay - - 1 58.0 0.0 0.75 0.0 33.6 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000025809 Itgb1 ENSMUST00000149116 ENSMUSP00000119699 TRANSLATION protein_coding start - 1 112.0 0.0 2.35 0.0 117.1 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025809 Itgb1 ENSMUST00000135281 - NO_TRANSLATION retained_intron ENSMUSG00000074446 Defa23 ENSMUST00000098899 ENSMUSP00000096498 TRANSLATION protein_coding - CCDS40265.1 1 93.0 0.0 1.0 0.1 122.0 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079112 Fam90a1a ENSMUST00000110741 ENSMUSP00000106369 TRANSLATION protein_coding - CCDS52517.1 1 429.0 4.0 0.0 0.0 66.5 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000079113 Defa43 ENSMUST00000110749 ENSMUSP00000106377 TRANSLATION protein_coding - CCDS52512.1 1 116.0 0.0 0.0 0.0 82.6 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000011837 Snapc2 ENSMUST00000208316 ENSMUSP00000146771 TRANSLATION protein_coding - - 1 249.0 0.0 2.33 0.0 349.4 0.0 -4,0 0.0391 1 6.0 MINOR ENSMUSG00000011837 Snapc2 ENSMUST00000208459 ENSMUSP00000146560 TRANSLATION protein_coding stop - 3 222.0 0.0 2.33 0.0 269.5 0.0 -4,-6 0.0305 1 -2.0 MINOR ENSMUSG00000011837 Snapc2 ENSMUST00000208110 ENSMUSP00000146378 TRANSLATION protein_coding start - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000011837 Snapc2 ENSMUST00000011981 ENSMUSP00000011981 TRANSLATION protein_coding - CCDS22081.1 1 359.0 0.0 2.33 0.4 468.0 0.0 -4,0 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000031910 Has3 ENSMUST00000176144 ENSMUSP00000135303 TRANSLATION protein_coding - CCDS22640.1 1 554.0 12.0 2.8 19.6 48.3 6.0 3,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000031910 Has3 ENSMUST00000175987 ENSMUSP00000135596 TRANSLATION protein_coding - - 5 258.0 12.0 1.8 0.0 0.0 2.0 3,-2 0.0043 - 9.858 MINOR ENSMUSG00000031910 Has3 ENSMUST00000034385 ENSMUSP00000034385 TRANSLATION protein_coding - CCDS22640.1 1 554.0 12.0 2.8 19.6 48.3 6.0 3,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000046108 Il17c ENSMUST00000050963 ENSMUSP00000056008 TRANSLATION protein_coding - - 1 182.0 0.0 0.48 0.0 96.8 0.0 -4,-7 0.7783 - 12.0 PRINCIPAL:1 ENSMUSG00000031715 Smarca5 ENSMUST00000043359 ENSMUSP00000044361 TRANSLATION protein_coding - CCDS22442.1 1 1051.0 6.0 16.978 0.7 335.2 0.0 -4,-5 1.0 26 18.0 PRINCIPAL:1 ENSMUSG00000031715 Smarca5 ENSMUST00000140110 - NO_TRANSLATION retained_intron ENSMUSG00000031715 Smarca5 ENSMUST00000150277 - NO_TRANSLATION retained_intron ENSMUSG00000031715 Smarca5 ENSMUST00000142470 - NO_TRANSLATION retained_intron ENSMUSG00000031715 Smarca5 ENSMUST00000122807 - NO_TRANSLATION retained_intron ENSMUSG00000031715 Smarca5 ENSMUST00000148455 - NO_TRANSLATION retained_intron ENSMUSG00000031491 Chrna6 ENSMUST00000033882 ENSMUSP00000033882 TRANSLATION protein_coding - CCDS40312.1 1 494.0 0.0 4.5 12.4 551.7 0.0 -1,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031845 Bco1 ENSMUST00000034308 ENSMUSP00000034308 TRANSLATION protein_coding - CCDS22697.1 1 566.0 4.0 6.305 0.1 370.1 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000031845 Bco1 ENSMUST00000176860 ENSMUSP00000134815 TRANSLATION protein_coding - CCDS52679.1 1 526.0 3.0 5.905 0.0 315.8 0.0 -4,-5 0.0304 3 10.944 MINOR ENSMUSG00000048371 Pdp2 ENSMUST00000059588 ENSMUSP00000092821 TRANSLATION protein_coding - CCDS22582.1 1 532.0 6.0 0.4 18.5 119.6 0.0 -4,0 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000038697 Taf5l ENSMUST00000212010 ENSMUSP00000148808 TRANSLATION protein_coding stop - 2 192.0 0.0 0.66 0.0 93.7 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000038697 Taf5l ENSMUST00000213055 - NO_TRANSLATION retained_intron ENSMUSG00000038697 Taf5l ENSMUST00000165628 ENSMUSP00000128710 TRANSLATION protein_coding - CCDS22767.1 1 589.0 0.0 2.005 22.6 267.9 0.0 -4,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000038697 Taf5l ENSMUST00000093039 ENSMUSP00000090726 TRANSLATION protein_coding - CCDS22767.1 1 589.0 0.0 2.005 22.6 267.9 0.0 -4,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000031755 Bbs2 ENSMUST00000172347 - NO_TRANSLATION retained_intron ENSMUSG00000031755 Bbs2 ENSMUST00000034206 ENSMUSP00000034206 TRANSLATION protein_coding - CCDS40434.1 1 721.0 9.0 13.0 25.2 923.2 0.0 -4,-1 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000031755 Bbs2 ENSMUST00000170208 - NO_TRANSLATION retained_intron ENSMUSG00000034189 Hsdl1 ENSMUST00000212065 ENSMUSP00000148641 TRANSLATION protein_coding stop - 2 101.0 9.0 2.75 0.0 36.8 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000034189 Hsdl1 ENSMUST00000036049 ENSMUSP00000044371 TRANSLATION protein_coding - CCDS22708.1 1 330.0 31.0 5.75 12.3 123.2 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000034189 Hsdl1 ENSMUST00000212198 ENSMUSP00000148675 TRANSLATION protein_coding stop - 3 22.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034189 Hsdl1 ENSMUST00000212517 ENSMUSP00000148352 TRANSLATION protein_coding - - 1 309.0 31.0 5.75 2.5 123.2 0.0 -4,-7 0.2224 7 18.399 MINOR ENSMUSG00000109372 Gm19410 ENSMUST00000207505 ENSMUSP00000147162 TRANSLATION protein_coding - - 5 2098.0 58.0 10.805 0.4 503.6 0.0 2,-3 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000031916 Cog8 ENSMUST00000134772 ENSMUSP00000137677 TRANSLATION nonsense_mediated_decay start - 3 99.0 0.0 0.0 0.0 80.1 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000031916 Cog8 ENSMUST00000095517 ENSMUSP00000093173 TRANSLATION protein_coding - CCDS22643.1 1 640.0 0.0 0.0 0.0 490.4 0.0 -2,-4 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000031916 Cog8 ENSMUST00000122903 - NO_TRANSLATION retained_intron ENSMUSG00000031916 Cog8 ENSMUST00000034391 ENSMUSP00000034391 TRANSLATION protein_coding - CCDS22643.1 1 640.0 0.0 0.0 0.0 490.4 0.0 -2,-4 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000031591 Asah1 ENSMUST00000131796 - NO_TRANSLATION retained_intron ENSMUSG00000031591 Asah1 ENSMUST00000110417 ENSMUSP00000106047 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000031591 Asah1 ENSMUST00000126561 - NO_TRANSLATION retained_intron ENSMUSG00000031591 Asah1 ENSMUST00000034000 ENSMUSP00000034000 TRANSLATION protein_coding - CCDS22262.1 1 394.0 0.0 9.75 8.2 258.2 0.0 4,-1 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000031591 Asah1 ENSMUST00000143057 ENSMUSP00000117362 TRANSLATION protein_coding stop - 3 119.0 0.0 1.75 0.0 62.3 0.0 1,-2 0.0 4 -2.0 MINOR ENSMUSG00000044006 Cilp2 ENSMUST00000057831 ENSMUSP00000061544 TRANSLATION protein_coding - CCDS40363.1 5 1162.0 0.0 2.78 0.1 181.9 0.0 3,-2 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000034911 Ushbp1 ENSMUST00000049184 ENSMUSP00000045668 TRANSLATION protein_coding - CCDS22393.1 1 680.0 0.0 0.0 0.1 90.1 0.0 -4,-7 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000034911 Ushbp1 ENSMUST00000212626 ENSMUSP00000148319 TRANSLATION nonsense_mediated_decay - - 1 331.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0022 1 -2.0 MINOR ENSMUSG00000034911 Ushbp1 ENSMUST00000213000 - NO_TRANSLATION retained_intron ENSMUSG00000034911 Ushbp1 ENSMUST00000212496 - NO_TRANSLATION retained_intron ENSMUSG00000034911 Ushbp1 ENSMUST00000212516 - NO_TRANSLATION retained_intron ENSMUSG00000079042 Apela ENSMUST00000124790 ENSMUSP00000139425 TRANSLATION protein_coding - CCDS80883.1 2 54.0 0.0 0.0 20.2 0.0 0.0 0,-4 1.0 - 4.0 PRINCIPAL:1 ENSMUSG00000079042 Apela ENSMUST00000142822 ENSMUSP00000140510 TRANSLATION protein_coding - CCDS80883.1 1 54.0 0.0 0.0 20.2 0.0 0.0 0,-4 1.0 - 4.0 PRINCIPAL:1 ENSMUSG00000031984 2810004N23Rik ENSMUST00000211971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031984 2810004N23Rik ENSMUST00000034465 ENSMUSP00000034465 TRANSLATION protein_coding - CCDS22775.1 1 281.0 0.0 0.0 0.4 113.5 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000031984 2810004N23Rik ENSMUST00000212808 - NO_TRANSLATION retained_intron ENSMUSG00000046844 Vat1l ENSMUST00000124143 - NO_TRANSLATION retained_intron ENSMUSG00000046844 Vat1l ENSMUST00000150963 ENSMUSP00000116680 TRANSLATION protein_coding stop - 3 127.0 1.0 1.3 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000046844 Vat1l ENSMUST00000049509 ENSMUSP00000053431 TRANSLATION protein_coding - CCDS22689.1 1 417.0 19.0 6.33 24.0 48.4 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000046844 Vat1l ENSMUST00000142591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031889 Phaf1 ENSMUST00000034361 ENSMUSP00000034361 TRANSLATION protein_coding - CCDS22593.1 1 422.0 0.0 0.0 30.8 540.0 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000031889 Phaf1 ENSMUST00000133035 - NO_TRANSLATION retained_intron ENSMUSG00000031889 Phaf1 ENSMUST00000132964 ENSMUSP00000123583 TRANSLATION protein_coding stop - 3 117.0 0.0 0.0 0.0 164.7 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000031889 Phaf1 ENSMUST00000141957 ENSMUSP00000119148 TRANSLATION nonsense_mediated_decay - - 1 165.0 0.0 0.0 0.0 186.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031889 Phaf1 ENSMUST00000156561 - NO_TRANSLATION retained_intron ENSMUSG00000031889 Phaf1 ENSMUST00000124113 ENSMUSP00000119743 TRANSLATION nonsense_mediated_decay - - 2 121.0 0.0 0.0 0.0 147.9 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000031527 Eri1 ENSMUST00000211536 - NO_TRANSLATION retained_intron ENSMUSG00000031527 Eri1 ENSMUST00000210884 ENSMUSP00000147464 TRANSLATION protein_coding stop - 3 94.0 6.0 2.5 0.0 35.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031527 Eri1 ENSMUST00000210483 ENSMUSP00000148099 TRANSLATION protein_coding stop - 3 50.0 0.0 1.5 0.0 35.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031527 Eri1 ENSMUST00000033927 ENSMUSP00000033927 TRANSLATION protein_coding - CCDS22244.1 1 345.0 12.0 6.85 9.1 139.7 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000031452 1700029H14Rik ENSMUST00000134023 ENSMUSP00000118793 TRANSLATION protein_coding - CCDS52488.1 1 237.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.2211 1 0.0 ALTERNATIVE:2 ENSMUSG00000031452 1700029H14Rik ENSMUST00000033830 ENSMUSP00000033830 TRANSLATION nonsense_mediated_decay - CCDS40233.1 1 219.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.8887 - -2.0 MINOR ENSMUSG00000031452 1700029H14Rik ENSMUST00000151400 ENSMUSP00000120739 TRANSLATION protein_coding - - 5 240.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.0499 1 0.0 ALTERNATIVE:2 ENSMUSG00000031452 1700029H14Rik ENSMUST00000132787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031452 1700029H14Rik ENSMUST00000209207 ENSMUSP00000147812 TRANSLATION nonsense_mediated_decay - CCDS52488.1 1 237.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.2211 - -2.0 MINOR ENSMUSG00000031452 1700029H14Rik ENSMUST00000187391 ENSMUSP00000140119 TRANSLATION protein_coding - CCDS40233.1 1 219.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.8887 1 0.0 PRINCIPAL:2 ENSMUSG00000047986 Palm3 ENSMUST00000142367 - NO_TRANSLATION retained_intron ENSMUSG00000047986 Palm3 ENSMUST00000055077 ENSMUSP00000051396 TRANSLATION protein_coding - CCDS40405.1 1 734.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.925 10 0.0 PRINCIPAL:1 ENSMUSG00000047986 Palm3 ENSMUST00000154171 - NO_TRANSLATION retained_intron ENSMUSG00000031557 Plekha2 ENSMUST00000128715 ENSMUSP00000122564 TRANSLATION protein_coding - CCDS22198.1 1 425.0 0.0 6.275 11.8 104.5 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000031557 Plekha2 ENSMUST00000098866 ENSMUSP00000096464 TRANSLATION protein_coding stop - 1 336.0 0.0 6.275 0.0 104.5 0.0 -4,-5 0.0211 6 -2.0 MINOR ENSMUSG00000031557 Plekha2 ENSMUST00000211708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031557 Plekha2 ENSMUST00000125466 ENSMUSP00000116764 TRANSLATION protein_coding stop - 5 95.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031557 Plekha2 ENSMUST00000064883 ENSMUSP00000066546 TRANSLATION protein_coding - CCDS22198.1 1 425.0 0.0 6.275 11.8 104.5 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000031613 Hpgd ENSMUST00000034026 ENSMUSP00000034026 TRANSLATION protein_coding - CCDS40341.1 1 269.0 27.0 6.75 1.1 194.7 0.0 -3,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000089857 Zfp882 ENSMUST00000125802 ENSMUSP00000121316 TRANSLATION protein_coding stop - 2 92.0 0.0 1.612 0.0 75.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000089857 Zfp882 ENSMUST00000110002 ENSMUSP00000105629 TRANSLATION protein_coding - CCDS52589.1 1 555.0 58.0 2.0 0.4 234.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000089857 Zfp882 ENSMUST00000126607 ENSMUSP00000119978 TRANSLATION protein_coding stop - 3 125.0 0.0 1.4 0.0 75.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033192 Lpcat2 ENSMUST00000209265 ENSMUSP00000148089 TRANSLATION nonsense_mediated_decay - - 1 236.0 0.0 3.5 0.0 0.0 2.0 -4,-6 0.0017 4 -2.0 MINOR ENSMUSG00000033192 Lpcat2 ENSMUST00000130471 - NO_TRANSLATION retained_intron ENSMUSG00000033192 Lpcat2 ENSMUST00000046290 ENSMUSP00000049252 TRANSLATION protein_coding - CCDS22524.1 1 544.0 10.0 11.13 8.8 81.4 2.0 -4,-6 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000033192 Lpcat2 ENSMUST00000151106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033192 Lpcat2 ENSMUST00000210099 ENSMUSP00000147941 TRANSLATION protein_coding - - 1 504.0 10.0 9.88 0.7 36.8 2.0 -4,-6 0.0137 9 12.21 MINOR ENSMUSG00000031545 Gpat4 ENSMUST00000210992 - NO_TRANSLATION retained_intron ENSMUSG00000031545 Gpat4 ENSMUST00000211260 - NO_TRANSLATION retained_intron ENSMUSG00000031545 Gpat4 ENSMUST00000210782 - NO_TRANSLATION retained_intron ENSMUSG00000031545 Gpat4 ENSMUST00000209507 ENSMUSP00000147679 TRANSLATION protein_coding stop - 5 146.0 0.0 1.7 0.0 0.0 3.0 -4,-6 0.0017 1 -2.0 MINOR ENSMUSG00000031545 Gpat4 ENSMUST00000167004 ENSMUSP00000127325 TRANSLATION protein_coding - CCDS22189.1 1 456.0 0.0 6.2 23.8 68.0 3.0 0,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000047264 Zfp358 ENSMUST00000207318 ENSMUSP00000147158 TRANSLATION protein_coding stop - 2 167.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000047264 Zfp358 ENSMUST00000061508 ENSMUSP00000060344 TRANSLATION protein_coding - CCDS40205.1 1 571.0 36.0 0.6 0.3 179.6 0.0 -4,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000047264 Zfp358 ENSMUST00000208423 ENSMUSP00000146953 TRANSLATION protein_coding - CCDS40205.1 - 571.0 36.0 0.6 0.3 179.6 0.0 -4,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000031536 Polb ENSMUST00000033938 ENSMUSP00000033938 TRANSLATION protein_coding - CCDS22181.1 1 335.0 7.0 10.0 33.3 334.8 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000031536 Polb ENSMUST00000210950 ENSMUSP00000148216 TRANSLATION nonsense_mediated_decay - - 2 111.0 0.0 3.5 0.0 68.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000034416 Pkd1l2 ENSMUST00000109093 ENSMUSP00000104721 TRANSLATION protein_coding - - 5 2462.0 0.0 8.136 0.0 608.6 0.0 1,-4 0.7167 - 8.0 ALTERNATIVE:2 ENSMUSG00000034416 Pkd1l2 ENSMUST00000162080 - NO_TRANSLATION retained_intron ENSMUSG00000034416 Pkd1l2 ENSMUST00000098375 ENSMUSP00000095977 TRANSLATION protein_coding - CCDS57646.1 5 2461.0 0.0 8.136 0.0 608.6 0.0 1,-4 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000034416 Pkd1l2 ENSMUST00000160449 - NO_TRANSLATION retained_intron ENSMUSG00000017049 Ccdc70 ENSMUST00000070649 ENSMUSP00000069249 TRANSLATION protein_coding - CCDS22167.1 1 223.0 0.0 1.0 6.6 0.0 0.0 -4,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000017049 Ccdc70 ENSMUST00000017193 ENSMUSP00000017193 TRANSLATION protein_coding - CCDS22167.1 1 223.0 0.0 1.0 6.6 0.0 0.0 -4,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000008129 Brme1 ENSMUST00000093375 ENSMUSP00000091067 TRANSLATION protein_coding - CCDS52617.1 1 565.0 0.0 1.8 0.0 510.3 0.0 -4,-2 0.2285 - 6.0 MINOR ENSMUSG00000008129 Brme1 ENSMUST00000143833 ENSMUSP00000114433 TRANSLATION protein_coding stop - 5 106.0 0.0 0.0 0.0 133.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000008129 Brme1 ENSMUST00000118856 ENSMUSP00000113651 TRANSLATION protein_coding - CCDS52616.1 1 600.0 0.0 1.8 0.0 624.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000008892 Vdac3 ENSMUST00000210096 - NO_TRANSLATION retained_intron ENSMUSG00000008892 Vdac3 ENSMUST00000009036 ENSMUSP00000009036 TRANSLATION protein_coding - CCDS22179.1 1 283.0 0.0 6.25 34.7 283.8 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000008892 Vdac3 ENSMUST00000211222 - NO_TRANSLATION retained_intron ENSMUSG00000094443 Sgo2b ENSMUST00000179944 ENSMUSP00000136323 TRANSLATION protein_coding - CCDS57623.1 5 1167.0 0.0 2.25 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:4 ENSMUSG00000094443 Sgo2b ENSMUST00000249043 ENSMUSP00000159550 TRANSLATION protein_coding - - - 1165.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.7608 - 6.0 ALTERNATIVE:2 ENSMUSG00000005534 Insr ENSMUST00000207100 ENSMUSP00000146818 TRANSLATION protein_coding start/stop - 1 224.0 0.0 3.0 0.0 24.5 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000005534 Insr ENSMUST00000091291 ENSMUSP00000088837 TRANSLATION protein_coding - CCDS22059.1 1 1372.0 22.0 19.93 0.8 668.9 0.0 1,-3 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000005534 Insr ENSMUST00000139504 - NO_TRANSLATION retained_intron ENSMUSG00000005534 Insr ENSMUST00000208839 ENSMUSP00000146651 TRANSLATION nonsense_mediated_decay start - 3 90.0 0.0 2.066 0.0 95.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000005534 Insr ENSMUST00000207295 - NO_TRANSLATION retained_intron ENSMUSG00000074441 Defa40 ENSMUST00000098895 ENSMUSP00000096494 TRANSLATION protein_coding - CCDS52507.1 1 93.0 0.0 1.0 0.1 110.1 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043090 Zfp866 ENSMUST00000137573 ENSMUSP00000119781 TRANSLATION protein_coding - CCDS40361.1 1 520.0 52.0 2.42 0.4 260.9 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000043090 Zfp866 ENSMUST00000131784 ENSMUSP00000116972 TRANSLATION protein_coding - - 1 95.0 0.0 1.42 0.0 0.0 0.0 -4,-5 0.0 - 3.522 MINOR ENSMUSG00000055435 Maf ENSMUST00000109104 ENSMUSP00000104732 TRANSLATION protein_coding - CCDS40486.1 - 370.0 0.0 0.5 1.1 189.4 0.0 -4,-5 0.7156 1 8.083 ALTERNATIVE:2 ENSMUSG00000055435 Maf ENSMUST00000069009 ENSMUSP00000067704 TRANSLATION protein_coding - - 1 380.0 0.0 0.5 2.2 189.4 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:2 ENSMUSG00000034041 Lyl1 ENSMUST00000238338 ENSMUSP00000158640 TRANSLATION protein_coding stop - - 34.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000034041 Lyl1 ENSMUST00000238364 ENSMUSP00000158840 TRANSLATION protein_coding stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034041 Lyl1 ENSMUST00000037165 ENSMUSP00000046010 TRANSLATION protein_coding - CCDS22476.1 1 278.0 0.0 2.4 8.4 53.6 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000034041 Lyl1 ENSMUST00000238562 ENSMUSP00000158636 TRANSLATION protein_coding - - - 205.0 0.0 2.4 0.0 53.6 0.0 -1,1 0.052 1 12.0 MINOR ENSMUSG00000071064 Zfp827 ENSMUST00000098614 ENSMUSP00000096214 TRANSLATION protein_coding - CCDS52604.1 1 1078.0 38.0 3.97 8.0 60.7 0.0 -4,-6 1.0 10 14.598 MINOR ENSMUSG00000071064 Zfp827 ENSMUST00000211475 - NO_TRANSLATION retained_intron ENSMUSG00000071064 Zfp827 ENSMUST00000129613 ENSMUSP00000119511 TRANSLATION protein_coding start - 3 223.0 17.0 1.62 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000071064 Zfp827 ENSMUST00000087927 ENSMUSP00000085238 TRANSLATION protein_coding - - 1 459.0 7.0 1.0 0.0 38.9 0.0 -4,-6 0.0032 3 3.846 MINOR ENSMUSG00000071064 Zfp827 ENSMUST00000155960 - NO_TRANSLATION retained_intron ENSMUSG00000071064 Zfp827 ENSMUST00000148713 ENSMUSP00000120913 TRANSLATION protein_coding start - 1 370.0 26.0 3.17 0.0 22.6 0.0 -4,-5 0.0018 6 -2.0 MINOR ENSMUSG00000071064 Zfp827 ENSMUST00000238669 ENSMUSP00000158613 TRANSLATION protein_coding - - - 1346.0 58.0 4.17 0.0 60.7 0.0 -4,-6 0.6257 10 18.0 PRINCIPAL:1 ENSMUSG00000071064 Zfp827 ENSMUST00000119254 ENSMUSP00000113199 TRANSLATION protein_coding - CCDS80900.1 1 1074.0 38.0 3.97 7.0 60.7 0.0 -4,-6 0.8705 10 14.169 MINOR ENSMUSG00000071064 Zfp827 ENSMUST00000145827 ENSMUSP00000114208 TRANSLATION nonsense_mediated_decay start - 5 343.0 26.0 3.5 0.0 22.6 0.0 -4,-5 0.0018 5 -2.0 MINOR ENSMUSG00000015341 Golga7 ENSMUST00000135646 - NO_TRANSLATION retained_intron ENSMUSG00000015341 Golga7 ENSMUST00000211602 - NO_TRANSLATION retained_intron ENSMUSG00000015341 Golga7 ENSMUST00000051094 ENSMUSP00000062983 TRANSLATION protein_coding - CCDS40297.1 1 137.0 0.0 3.5 20.9 116.9 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000015341 Golga7 ENSMUST00000121783 ENSMUSP00000112935 TRANSLATION protein_coding - CCDS40297.1 1 137.0 0.0 3.5 20.9 116.9 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000050751 Pgbd5 ENSMUST00000172566 ENSMUSP00000133560 TRANSLATION protein_coding - - 1 432.0 0.0 0.8 0.0 291.3 0.0 -4,-6 0.0762 8 8.0 MINOR ENSMUSG00000050751 Pgbd5 ENSMUST00000136892 ENSMUSP00000123265 TRANSLATION protein_coding - CCDS22770.1 5 409.0 0.0 0.8 4.6 291.3 0.0 -4,-6 0.8364 8 9.162 ALTERNATIVE:1 ENSMUSG00000050751 Pgbd5 ENSMUST00000140126 - NO_TRANSLATION retained_intron ENSMUSG00000050751 Pgbd5 ENSMUST00000128312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050751 Pgbd5 ENSMUST00000140012 ENSMUSP00000120984 TRANSLATION protein_coding - - 5 523.0 0.0 0.8 7.2 291.3 0.0 -4,-2 1.0 11 10.0 PRINCIPAL:3 ENSMUSG00000031532 Saraf ENSMUST00000239436 ENSMUSP00000159294 TRANSLATION protein_coding - CCDS22240.1 - 363.0 0.0 2.0 0.0 318.5 0.0 0,4 0.3831 7 8.0 ALTERNATIVE:2 ENSMUSG00000031532 Saraf ENSMUST00000211637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031532 Saraf ENSMUST00000211664 - NO_TRANSLATION retained_intron ENSMUSG00000031532 Saraf ENSMUST00000209470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031532 Saraf ENSMUST00000033933 ENSMUSP00000033933 TRANSLATION protein_coding - - 1 334.0 0.0 2.0 2.2 318.5 0.0 4,-1 1.0 7 9.0 PRINCIPAL:2 ENSMUSG00000052934 Fbxo31 ENSMUST00000059018 ENSMUSP00000057573 TRANSLATION protein_coding - CCDS52693.1 1 507.0 0.0 6.85 1.1 47.6 0.0 -4,-1 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000052934 Fbxo31 ENSMUST00000181663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052934 Fbxo31 ENSMUST00000212985 ENSMUSP00000148763 TRANSLATION protein_coding start/stop - 5 202.0 0.0 2.1 0.0 47.6 0.0 -4,-2 0.0081 2 -2.0 MINOR ENSMUSG00000052934 Fbxo31 ENSMUST00000180539 - NO_TRANSLATION retained_intron ENSMUSG00000052934 Fbxo31 ENSMUST00000180979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074037 Mc1r ENSMUST00000098324 ENSMUSP00000095929 TRANSLATION protein_coding - CCDS22756.1 - 315.0 0.0 0.8 6.2 105.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000090290 Tarbp1 ENSMUST00000170518 ENSMUSP00000129815 TRANSLATION protein_coding - CCDS52710.1 5 1579.0 16.0 3.6 0.4 104.9 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000037148 Arhgap10 ENSMUST00000210519 ENSMUSP00000147493 TRANSLATION protein_coding - - 1 764.0 0.0 10.002 0.0 488.4 0.0 -4,-5 0.0532 12 9.504 MINOR ENSMUSG00000037148 Arhgap10 ENSMUST00000210922 ENSMUSP00000147485 TRANSLATION protein_coding - - 1 735.0 0.0 10.752 1.8 505.0 0.0 -4,-5 0.2546 11 12.264 MINOR ENSMUSG00000037148 Arhgap10 ENSMUST00000076316 ENSMUSP00000075658 TRANSLATION protein_coding - CCDS22425.1 1 786.0 0.0 10.752 13.2 505.0 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000058833 Rex1bd ENSMUST00000138196 - NO_TRANSLATION retained_intron ENSMUSG00000058833 Rex1bd ENSMUST00000143598 - NO_TRANSLATION retained_intron ENSMUSG00000058833 Rex1bd ENSMUST00000132107 - NO_TRANSLATION retained_intron ENSMUSG00000058833 Rex1bd ENSMUST00000133683 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058833 Rex1bd ENSMUST00000128620 - NO_TRANSLATION retained_intron ENSMUSG00000058833 Rex1bd ENSMUST00000075175 ENSMUSP00000074670 TRANSLATION protein_coding - CCDS22370.1 1 169.0 0.0 3.25 0.1 91.6 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000058833 Rex1bd ENSMUST00000135773 - NO_TRANSLATION retained_intron ENSMUSG00000058833 Rex1bd ENSMUST00000136913 ENSMUSP00000120446 TRANSLATION protein_coding - - 5 151.0 0.0 2.5 0.0 91.6 0.0 -4,-6 0.002 5 10.5 MINOR ENSMUSG00000046441 Cmtr2 ENSMUST00000189685 ENSMUSP00000139937 TRANSLATION protein_coding stop - 5 51.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000046441 Cmtr2 ENSMUST00000056972 ENSMUSP00000060558 TRANSLATION protein_coding - CCDS22662.1 1 767.0 22.0 0.0 9.3 96.6 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000031822 Gse1 ENSMUST00000180448 ENSMUSP00000137811 TRANSLATION protein_coding stop - 3 729.0 0.0 0.0 0.0 0.0 0.0 -2,0 0.0141 3 -2.0 MINOR ENSMUSG00000031822 Gse1 ENSMUST00000118136 ENSMUSP00000112981 TRANSLATION protein_coding - CCDS52688.1 1 1213.0 0.0 0.0 0.3 210.0 0.0 -4,-6 0.6232 13 2.0 ALTERNATIVE:2 ENSMUSG00000031822 Gse1 ENSMUST00000034279 ENSMUSP00000034279 TRANSLATION protein_coding - CCDS52687.1 1 1223.0 0.0 0.0 0.3 210.0 0.0 -4,-6 1.0 13 2.0 PRINCIPAL:2 ENSMUSG00000031822 Gse1 ENSMUST00000147327 - NO_TRANSLATION retained_intron ENSMUSG00000031822 Gse1 ENSMUST00000141113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031822 Gse1 ENSMUST00000211997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031822 Gse1 ENSMUST00000120493 ENSMUSP00000113577 TRANSLATION protein_coding - CCDS52689.1 1 1210.0 0.0 0.0 0.3 210.0 0.0 -4,-6 0.6192 13 2.0 ALTERNATIVE:2 ENSMUSG00000031502 Col4a1 ENSMUST00000209000 - NO_TRANSLATION retained_intron ENSMUSG00000031502 Col4a1 ENSMUST00000130488 - NO_TRANSLATION retained_intron ENSMUSG00000031502 Col4a1 ENSMUST00000208386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031502 Col4a1 ENSMUST00000209735 ENSMUSP00000147951 TRANSLATION nonsense_mediated_decay - - 2 1562.0 0.0 8.304 0.0 625.0 0.0 3,-2 0.0897 5 -2.0 MINOR ENSMUSG00000031502 Col4a1 ENSMUST00000033898 ENSMUSP00000033898 TRANSLATION protein_coding - CCDS40219.1 1 1669.0 0.0 11.134 8.2 794.8 0.0 3,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000031502 Col4a1 ENSMUST00000208095 ENSMUSP00000146554 TRANSLATION protein_coding stop - 3 133.0 0.0 2.614 0.0 41.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031502 Col4a1 ENSMUST00000209661 ENSMUSP00000148226 TRANSLATION nonsense_mediated_decay start - 5 126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031502 Col4a1 ENSMUST00000209598 ENSMUSP00000147459 TRANSLATION protein_coding start - 5 328.0 0.0 4.76 0.0 211.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000064325 Hhip ENSMUST00000155850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064325 Hhip ENSMUST00000079038 ENSMUSP00000078047 TRANSLATION protein_coding - CCDS22440.1 1 700.0 0.0 9.62 14.5 81.0 0.0 3,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000079157 Nalf1 ENSMUST00000110969 ENSMUSP00000106596 TRANSLATION protein_coding - CCDS40216.1 1 467.0 0.0 2.03 1.4 0.0 0.0 -4,-7 1.0 1 7.0 PRINCIPAL:2 ENSMUSG00000079157 Nalf1 ENSMUST00000208855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079157 Nalf1 ENSMUST00000207297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079157 Nalf1 ENSMUST00000207869 ENSMUSP00000146968 TRANSLATION nonsense_mediated_decay start - 1 21.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0153 - -2.0 MINOR ENSMUSG00000079157 Nalf1 ENSMUST00000208171 - NO_TRANSLATION retained_intron ENSMUSG00000079157 Nalf1 ENSMUST00000208933 ENSMUSP00000146609 TRANSLATION protein_coding - CCDS85497.1 1 378.0 0.0 2.028 1.4 0.0 0.0 -4,-7 0.4234 1 6.994 ALTERNATIVE:2 ENSMUSG00000002910 Arrdc2 ENSMUST00000212770 - NO_TRANSLATION retained_intron ENSMUSG00000002910 Arrdc2 ENSMUST00000212508 - NO_TRANSLATION retained_intron ENSMUSG00000002910 Arrdc2 ENSMUST00000212855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002910 Arrdc2 ENSMUST00000212898 - NO_TRANSLATION retained_intron ENSMUSG00000002910 Arrdc2 ENSMUST00000212405 ENSMUSP00000148405 TRANSLATION protein_coding stop - 3 42.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000002910 Arrdc2 ENSMUST00000002989 ENSMUSP00000002989 TRANSLATION protein_coding - CCDS40376.1 1 407.0 0.0 7.0 29.1 214.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000002910 Arrdc2 ENSMUST00000213095 - NO_TRANSLATION retained_intron ENSMUSG00000036712 Cyld ENSMUST00000098519 ENSMUSP00000096119 TRANSLATION protein_coding - CCDS52633.1 5 955.0 8.0 12.05 17.5 419.7 0.0 -4,-5 0.9881 17 18.0 ALTERNATIVE:1 ENSMUSG00000036712 Cyld ENSMUST00000209559 ENSMUSP00000147426 TRANSLATION protein_coding - CCDS22513.1 1 952.0 8.0 12.05 17.5 421.0 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:4 ENSMUSG00000036712 Cyld ENSMUST00000209532 ENSMUSP00000147654 TRANSLATION protein_coding - CCDS52633.1 5 955.0 8.0 12.05 17.5 419.7 0.0 -4,-5 0.9881 17 18.0 ALTERNATIVE:1 ENSMUSG00000036712 Cyld ENSMUST00000211554 ENSMUSP00000148037 TRANSLATION protein_coding - CCDS22513.1 1 952.0 8.0 12.05 17.5 421.0 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:4 ENSMUSG00000036712 Cyld ENSMUST00000109626 ENSMUSP00000105254 TRANSLATION protein_coding - CCDS22513.1 5 952.0 8.0 12.05 17.5 421.0 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:4 ENSMUSG00000036712 Cyld ENSMUST00000211671 - NO_TRANSLATION retained_intron ENSMUSG00000036712 Cyld ENSMUST00000209742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036712 Cyld ENSMUST00000209722 - NO_TRANSLATION retained_intron ENSMUSG00000036712 Cyld ENSMUST00000210302 - NO_TRANSLATION retained_intron ENSMUSG00000036712 Cyld ENSMUST00000209206 ENSMUSP00000147904 TRANSLATION protein_coding - CCDS85579.1 5 770.0 8.0 10.45 0.0 204.8 0.0 -4,-5 0.0277 16 9.302 MINOR ENSMUSG00000042353 Frem3 ENSMUST00000039695 ENSMUSP00000038015 TRANSLATION protein_coding - CCDS52606.1 5 2127.0 5.0 2.492 0.1 854.3 0.0 1,-3 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000039814 Xkr5 ENSMUST00000152974 ENSMUSP00000119436 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000039814 Xkr5 ENSMUST00000095438 ENSMUSP00000093089 TRANSLATION protein_coding - CCDS52495.1 1 676.0 0.0 0.0 0.1 284.0 7.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000039814 Xkr5 ENSMUST00000144987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039814 Xkr5 ENSMUST00000143913 ENSMUSP00000121958 TRANSLATION nonsense_mediated_decay - - 5 112.0 0.0 0.0 0.0 55.6 1.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039814 Xkr5 ENSMUST00000055503 ENSMUSP00000061748 TRANSLATION protein_coding - CCDS40245.1 1 510.0 0.0 0.0 0.1 152.8 5.0 -2,-5 0.058 - 0.0 MINOR ENSMUSG00000013150 Gfod2 ENSMUST00000013294 ENSMUSP00000013294 TRANSLATION protein_coding - CCDS22612.1 1 385.0 2.0 2.33 36.9 46.3 0.0 -2,0 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000013150 Gfod2 ENSMUST00000135959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013150 Gfod2 ENSMUST00000155038 ENSMUSP00000122772 TRANSLATION protein_coding - - 2 159.0 0.0 1.0 0.0 32.2 0.0 -2,0 0.0003 3 6.744 MINOR ENSMUSG00000031665 Sall1 ENSMUST00000034090 ENSMUSP00000034090 TRANSLATION protein_coding - CCDS40427.1 1 1323.0 36.0 0.0 1.1 156.4 0.0 -4,-7 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000052488 Cherp ENSMUST00000212991 ENSMUSP00000148273 TRANSLATION protein_coding - CCDS40389.1 1 938.0 0.0 1.098 0.7 169.4 0.0 -4,-5 1.0 15 8.0 PRINCIPAL:2 ENSMUSG00000052488 Cherp ENSMUST00000079510 ENSMUSP00000078469 TRANSLATION protein_coding - - 1 949.0 0.0 1.098 0.7 162.4 0.0 -4,-5 0.1671 15 7.25 ALTERNATIVE:2 ENSMUSG00000052488 Cherp ENSMUST00000212586 - NO_TRANSLATION retained_intron ENSMUSG00000052488 Cherp ENSMUST00000212870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052488 Cherp ENSMUST00000212070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052488 Cherp ENSMUST00000212016 - NO_TRANSLATION retained_intron ENSMUSG00000052488 Cherp ENSMUST00000212548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031862 Atp13a1 ENSMUST00000238316 ENSMUSP00000158602 TRANSLATION nonsense_mediated_decay start - - 69.0 0.0 0.7 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031862 Atp13a1 ENSMUST00000238217 - NO_TRANSLATION retained_intron ENSMUSG00000031862 Atp13a1 ENSMUST00000238491 - NO_TRANSLATION retained_intron ENSMUSG00000031862 Atp13a1 ENSMUST00000238710 - NO_TRANSLATION retained_intron ENSMUSG00000031862 Atp13a1 ENSMUST00000238442 - NO_TRANSLATION retained_intron ENSMUSG00000031862 Atp13a1 ENSMUST00000034326 ENSMUSP00000034326 TRANSLATION protein_coding - CCDS22349.1 1 1200.0 3.0 14.475 2.9 117.2 0.0 -4,-7 1.0 32 16.0 PRINCIPAL:1 ENSMUSG00000031862 Atp13a1 ENSMUST00000238646 - NO_TRANSLATION retained_intron ENSMUSG00000031862 Atp13a1 ENSMUST00000238648 - NO_TRANSLATION retained_intron ENSMUSG00000031862 Atp13a1 ENSMUST00000238550 - NO_TRANSLATION retained_intron ENSMUSG00000031862 Atp13a1 ENSMUST00000238353 - NO_TRANSLATION retained_intron ENSMUSG00000031862 Atp13a1 ENSMUST00000238453 - NO_TRANSLATION retained_intron ENSMUSG00000110332 Gm19935 ENSMUST00000209208 ENSMUSP00000147921 TRANSLATION protein_coding - - 1 52.0 0.0 0.0 1.0 0.0 0.0 -4,-5 0.593 1 0.0 PRINCIPAL:1 ENSMUSG00000074215 Gm10643 ENSMUST00000098592 ENSMUSP00000096191 TRANSLATION protein_coding - - - 111.0 2.0 0.0 0.0 0.0 0.0 -4,-2 0.5863 - 2.0 PRINCIPAL:1 ENSMUSG00000031585 Gtf2e2 ENSMUST00000190675 ENSMUSP00000140383 TRANSLATION protein_coding stop - 3 30.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000031585 Gtf2e2 ENSMUST00000187392 ENSMUSP00000141167 TRANSLATION protein_coding stop - 3 62.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000031585 Gtf2e2 ENSMUST00000170705 ENSMUSP00000126284 TRANSLATION protein_coding - CCDS22236.1 1 292.0 0.0 4.75 31.3 84.7 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000031585 Gtf2e2 ENSMUST00000167264 ENSMUSP00000129834 TRANSLATION protein_coding - CCDS22236.1 1 292.0 0.0 4.75 31.3 84.7 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000031585 Gtf2e2 ENSMUST00000171010 ENSMUSP00000132287 TRANSLATION protein_coding - CCDS22236.1 5 292.0 0.0 4.75 31.3 84.7 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000031585 Gtf2e2 ENSMUST00000190639 ENSMUSP00000141016 TRANSLATION protein_coding stop - 5 127.0 0.0 1.75 0.0 49.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000031585 Gtf2e2 ENSMUST00000186200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000097084 Foxl1 ENSMUST00000181609 ENSMUSP00000137732 TRANSLATION protein_coding - CCDS59744.1 - 336.0 0.0 0.6 1.5 133.1 0.0 -2,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000006276 Eps15l1 ENSMUST00000212590 ENSMUSP00000148484 TRANSLATION protein_coding - CCDS85560.1 1 599.0 10.0 9.31 1.0 0.0 0.0 -4,-5 0.2316 33 12.0 MINOR ENSMUSG00000006276 Eps15l1 ENSMUST00000163643 ENSMUSP00000129739 TRANSLATION protein_coding - CCDS52597.1 1 907.0 10.0 9.31 11.1 0.0 0.0 -4,-5 1.0 46 15.0 PRINCIPAL:1 ENSMUSG00000006276 Eps15l1 ENSMUST00000212257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006276 Eps15l1 ENSMUST00000212121 ENSMUSP00000148468 TRANSLATION protein_coding - CCDS85561.1 1 763.0 10.0 9.31 1.4 0.0 0.0 -4,-5 0.2541 40 12.12 MINOR ENSMUSG00000006276 Eps15l1 ENSMUST00000212950 - NO_TRANSLATION retained_intron ENSMUSG00000006276 Eps15l1 ENSMUST00000211977 - NO_TRANSLATION retained_intron ENSMUSG00000001472 Tcf25 ENSMUST00000108840 ENSMUSP00000104468 TRANSLATION protein_coding - CCDS52700.1 1 626.0 0.0 0.0 1.1 394.1 0.0 -4,-2 0.2867 12 6.039 MINOR ENSMUSG00000001472 Tcf25 ENSMUST00000212996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001472 Tcf25 ENSMUST00000212498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001472 Tcf25 ENSMUST00000057934 ENSMUSP00000056485 TRANSLATION protein_coding - CCDS22755.1 1 676.0 0.0 0.0 8.8 394.1 0.0 -4,-2 1.0 15 9.0 PRINCIPAL:1 ENSMUSG00000001472 Tcf25 ENSMUST00000211932 ENSMUSP00000148676 TRANSLATION protein_coding - - 1 626.0 0.0 0.0 1.1 394.1 0.0 -4,-2 0.1853 12 6.039 MINOR ENSMUSG00000001472 Tcf25 ENSMUST00000212470 ENSMUSP00000148344 TRANSLATION protein_coding - CCDS85631.1 1 600.0 0.0 0.0 0.0 394.1 0.0 -4,-2 0.1718 12 6.0 MINOR ENSMUSG00000001472 Tcf25 ENSMUST00000212571 ENSMUSP00000148531 TRANSLATION protein_coding - CCDS85630.1 1 625.0 0.0 0.0 1.1 394.1 0.0 -4,-2 0.2874 12 6.039 MINOR ENSMUSG00000001472 Tcf25 ENSMUST00000211964 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001472 Tcf25 ENSMUST00000212741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001472 Tcf25 ENSMUST00000212880 ENSMUSP00000148504 TRANSLATION protein_coding - - 1 110.0 0.0 0.0 0.0 43.4 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000001472 Tcf25 ENSMUST00000212569 ENSMUSP00000148454 TRANSLATION protein_coding stop - 1 651.0 0.0 0.0 0.1 394.1 0.0 -4,-2 0.1285 15 -2.0 MINOR ENSMUSG00000031976 Urb2 ENSMUST00000034457 ENSMUSP00000034457 TRANSLATION protein_coding - CCDS22768.1 1 1524.0 0.0 0.0 5.1 85.0 0.0 -4,-6 1.0 18 8.0 PRINCIPAL:1 ENSMUSG00000031976 Urb2 ENSMUST00000173168 ENSMUSP00000133547 TRANSLATION nonsense_mediated_decay - - 1 1296.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0233 16 -2.0 MINOR ENSMUSG00000031883 Car7 ENSMUST00000159416 ENSMUSP00000125112 TRANSLATION protein_coding - CCDS80920.1 1 208.0 3.0 5.5 2.4 269.7 0.0 -4,-5 0.0237 3 8.426 MINOR ENSMUSG00000031883 Car7 ENSMUST00000056051 ENSMUSP00000052136 TRANSLATION protein_coding - CCDS22581.1 1 264.0 3.0 7.0 34.9 332.0 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000031883 Car7 ENSMUST00000162761 ENSMUSP00000125404 TRANSLATION protein_coding - CCDS80920.1 1 208.0 3.0 5.5 2.4 269.7 0.0 -4,-5 0.0237 3 8.426 MINOR ENSMUSG00000031883 Car7 ENSMUST00000162399 - NO_TRANSLATION retained_intron ENSMUSG00000031883 Car7 ENSMUST00000212942 - NO_TRANSLATION retained_intron ENSMUSG00000015023 Ddx19a ENSMUST00000040416 ENSMUSP00000047898 TRANSLATION protein_coding - CCDS22668.1 1 478.0 14.0 8.5 24.0 192.2 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000015023 Ddx19a ENSMUST00000173183 - NO_TRANSLATION retained_intron ENSMUSG00000015023 Ddx19a ENSMUST00000130133 - NO_TRANSLATION retained_intron ENSMUSG00000005410 Mcm5 ENSMUST00000212426 ENSMUSP00000148648 TRANSLATION protein_coding - CCDS22424.1 1 734.0 15.0 13.822 33.9 649.7 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000005410 Mcm5 ENSMUST00000212811 ENSMUSP00000148525 TRANSLATION protein_coding - CCDS22424.1 1 734.0 15.0 13.822 33.9 649.7 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000005410 Mcm5 ENSMUST00000164309 ENSMUSP00000126135 TRANSLATION protein_coding - CCDS22424.1 1 734.0 15.0 13.822 33.9 649.7 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000005410 Mcm5 ENSMUST00000212648 - NO_TRANSLATION retained_intron ENSMUSG00000005410 Mcm5 ENSMUST00000211912 - NO_TRANSLATION retained_intron ENSMUSG00000038064 Cldn22 ENSMUST00000038693 ENSMUSP00000041676 TRANSLATION protein_coding - CCDS52550.1 - 220.0 0.0 1.0 14.7 74.3 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000033931 Rbm34 ENSMUST00000212618 ENSMUSP00000148473 TRANSLATION protein_coding - - 1 422.0 0.0 4.5 0.0 58.0 0.0 -4,-5 0.0135 10 8.496 MINOR ENSMUSG00000033931 Rbm34 ENSMUST00000045994 ENSMUSP00000048450 TRANSLATION protein_coding - CCDS22787.1 1 442.0 0.0 5.25 0.0 87.1 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000033931 Rbm34 ENSMUST00000212583 - NO_TRANSLATION retained_intron ENSMUSG00000046282 Adam20 ENSMUST00000056331 ENSMUSP00000057794 TRANSLATION protein_coding - CCDS40325.1 1 760.0 16.0 0.32 0.0 408.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036199 Ndufa13 ENSMUST00000110167 ENSMUSP00000105796 TRANSLATION protein_coding - CCDS22353.1 1 144.0 0.0 3.5 28.8 167.2 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000031539 Ap3m2 ENSMUST00000163739 ENSMUSP00000128446 TRANSLATION protein_coding - CCDS22184.1 1 418.0 0.0 7.75 36.9 275.8 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000031539 Ap3m2 ENSMUST00000210476 - NO_TRANSLATION retained_intron ENSMUSG00000031539 Ap3m2 ENSMUST00000210656 ENSMUSP00000147967 TRANSLATION protein_coding - CCDS22184.1 1 418.0 0.0 7.75 36.9 275.8 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000031539 Ap3m2 ENSMUST00000210148 - NO_TRANSLATION retained_intron ENSMUSG00000062007 Hsh2d ENSMUST00000072097 ENSMUSP00000071970 TRANSLATION protein_coding - CCDS22410.1 1 334.0 0.0 3.6 0.1 54.4 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000062007 Hsh2d ENSMUST00000165324 ENSMUSP00000127575 TRANSLATION protein_coding - CCDS22410.1 1 334.0 0.0 3.6 0.1 54.4 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000071104 Ccdc110 ENSMUST00000095326 ENSMUSP00000092964 TRANSLATION protein_coding - CCDS22282.1 1 848.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9354 - 0.0 PRINCIPAL:1 ENSMUSG00000071104 Ccdc110 ENSMUST00000174815 ENSMUSP00000134510 TRANSLATION nonsense_mediated_decay - - 5 77.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 - -2.0 MINOR ENSMUSG00000031608 Galnt7 ENSMUST00000110316 ENSMUSP00000105945 TRANSLATION protein_coding - CCDS52552.1 1 657.0 21.0 10.75 13.9 178.4 0.0 1,-3 1.0 19 18.0 PRINCIPAL:4 ENSMUSG00000031608 Galnt7 ENSMUST00000139417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031608 Galnt7 ENSMUST00000156907 - NO_TRANSLATION retained_intron ENSMUSG00000031608 Galnt7 ENSMUST00000034021 ENSMUSP00000034021 TRANSLATION protein_coding - CCDS22317.1 1 657.0 21.0 10.75 13.9 173.6 0.0 1,-3 0.9235 19 18.0 ALTERNATIVE:1 ENSMUSG00000055835 Zfp1 ENSMUST00000212206 ENSMUSP00000148472 TRANSLATION nonsense_mediated_decay - - 1 64.0 0.0 1.75 0.0 85.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055835 Zfp1 ENSMUST00000211926 ENSMUSP00000148310 TRANSLATION protein_coding - CCDS85614.1 1 389.0 32.0 2.0 0.0 247.2 0.0 -4,-5 0.0998 2 14.982 MINOR ENSMUSG00000055835 Zfp1 ENSMUST00000212072 ENSMUSP00000148511 TRANSLATION protein_coding - - 1 370.0 32.0 1.5 5.0 191.8 0.0 -4,-5 0.254 2 11.958 MINOR ENSMUSG00000055835 Zfp1 ENSMUST00000077791 ENSMUSP00000076964 TRANSLATION protein_coding - CCDS22678.1 1 403.0 32.0 2.5 9.0 277.5 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000061313 Ddhd2 ENSMUST00000033975 ENSMUSP00000033975 TRANSLATION protein_coding - CCDS52529.1 1 699.0 0.0 1.6 0.4 255.5 0.0 -4,-5 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000061313 Ddhd2 ENSMUST00000211751 ENSMUSP00000147702 TRANSLATION protein_coding start - 2 84.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000061313 Ddhd2 ENSMUST00000210888 ENSMUSP00000148084 TRANSLATION protein_coding stop - 3 110.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000061313 Ddhd2 ENSMUST00000209419 - NO_TRANSLATION retained_intron ENSMUSG00000061313 Ddhd2 ENSMUST00000210777 ENSMUSP00000148250 TRANSLATION protein_coding start - 5 84.0 0.0 0.0 0.0 65.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000061313 Ddhd2 ENSMUST00000211688 ENSMUSP00000147859 TRANSLATION protein_coding - - 1 618.0 0.0 1.6 0.0 184.5 0.0 -4,-7 0.0347 15 7.74 MINOR ENSMUSG00000061313 Ddhd2 ENSMUST00000211009 ENSMUSP00000147769 TRANSLATION nonsense_mediated_decay - - 1 358.0 0.0 0.0 1.2 28.6 0.0 -4,-5 0.0704 7 -2.0 MINOR ENSMUSG00000031878 Nae1 ENSMUST00000160913 - NO_TRANSLATION retained_intron ENSMUSG00000031878 Nae1 ENSMUST00000162466 ENSMUSP00000125456 TRANSLATION protein_coding - - 5 510.0 0.0 15.08 1.0 36.3 0.0 -4,-5 0.047 21 7.356 MINOR ENSMUSG00000031878 Nae1 ENSMUST00000213067 - NO_TRANSLATION retained_intron ENSMUSG00000031878 Nae1 ENSMUST00000161462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031878 Nae1 ENSMUST00000212514 - NO_TRANSLATION retained_intron ENSMUSG00000031878 Nae1 ENSMUST00000159330 - NO_TRANSLATION retained_intron ENSMUSG00000031878 Nae1 ENSMUST00000159702 - NO_TRANSLATION retained_intron ENSMUSG00000031878 Nae1 ENSMUST00000159393 - NO_TRANSLATION retained_intron ENSMUSG00000031878 Nae1 ENSMUST00000160148 - NO_TRANSLATION retained_intron ENSMUSG00000031878 Nae1 ENSMUST00000034349 ENSMUSP00000034349 TRANSLATION protein_coding - CCDS40452.1 1 534.0 0.0 15.83 0.0 76.3 0.0 -4,-5 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000031878 Nae1 ENSMUST00000161411 - NO_TRANSLATION retained_intron ENSMUSG00000031878 Nae1 ENSMUST00000159696 - NO_TRANSLATION retained_intron ENSMUSG00000031878 Nae1 ENSMUST00000161474 - NO_TRANSLATION retained_intron ENSMUSG00000004565 Pnpla6 ENSMUST00000207430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004565 Pnpla6 ENSMUST00000207146 ENSMUSP00000146441 TRANSLATION protein_coding stop - 3 109.0 0.0 0.0 0.0 0.0 3.0 -4,-7 0.0009 3 -2.0 MINOR ENSMUSG00000004565 Pnpla6 ENSMUST00000207336 ENSMUSP00000146543 TRANSLATION protein_coding start/stop - 5 207.0 0.0 1.24 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000004565 Pnpla6 ENSMUST00000208762 ENSMUSP00000147213 TRANSLATION protein_coding stop - 5 150.0 0.0 0.0 0.0 0.0 3.0 -4,-7 0.0009 3 -2.0 MINOR ENSMUSG00000004565 Pnpla6 ENSMUST00000004681 ENSMUSP00000004681 TRANSLATION protein_coding - CCDS40206.1 1 1327.0 12.0 5.4775 4.2 250.4 3.0 -2,-5 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000004565 Pnpla6 ENSMUST00000207299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004565 Pnpla6 ENSMUST00000207317 - NO_TRANSLATION retained_intron ENSMUSG00000004565 Pnpla6 ENSMUST00000207424 ENSMUSP00000147227 TRANSLATION protein_coding stop - 5 201.0 0.0 0.0 0.0 0.0 3.0 -2,-5 0.0002 2 -2.0 MINOR ENSMUSG00000004565 Pnpla6 ENSMUST00000208691 - NO_TRANSLATION retained_intron ENSMUSG00000004565 Pnpla6 ENSMUST00000208006 - NO_TRANSLATION retained_intron ENSMUSG00000004565 Pnpla6 ENSMUST00000208914 - NO_TRANSLATION retained_intron ENSMUSG00000004565 Pnpla6 ENSMUST00000208851 - NO_TRANSLATION retained_intron ENSMUSG00000004565 Pnpla6 ENSMUST00000207941 ENSMUSP00000146555 TRANSLATION protein_coding - - 1 1316.0 12.0 4.79 0.0 225.3 3.0 -4,-5 0.0681 18 15.12 MINOR ENSMUSG00000004565 Pnpla6 ENSMUST00000207929 - NO_TRANSLATION retained_intron ENSMUSG00000004565 Pnpla6 ENSMUST00000111070 ENSMUSP00000106699 TRANSLATION protein_coding - CCDS40206.1 5 1327.0 12.0 5.4775 4.2 250.4 3.0 -2,-5 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000004565 Pnpla6 ENSMUST00000208370 - NO_TRANSLATION retained_intron ENSMUSG00000004565 Pnpla6 ENSMUST00000207421 ENSMUSP00000146377 TRANSLATION protein_coding start/stop - 3 224.0 0.0 2.88 0.0 79.3 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000004565 Pnpla6 ENSMUST00000208002 ENSMUSP00000146680 TRANSLATION protein_coding - CCDS85487.1 1 1345.0 12.0 5.4775 0.7 250.4 3.0 -4,-7 0.5695 20 18.0 MINOR ENSMUSG00000004565 Pnpla6 ENSMUST00000208315 - NO_TRANSLATION retained_intron ENSMUSG00000004565 Pnpla6 ENSMUST00000208310 ENSMUSP00000146847 TRANSLATION protein_coding stop - 3 49.0 0.0 0.0 0.0 0.0 3.0 -4,-7 0.0009 1 -2.0 MINOR ENSMUSG00000019278 Dpep1 ENSMUST00000212409 ENSMUSP00000148823 TRANSLATION protein_coding stop - 3 284.0 6.0 6.58 0.0 301.7 0.0 2,-2 0.0022 11 -2.0 MINOR ENSMUSG00000019278 Dpep1 ENSMUST00000019422 ENSMUSP00000019422 TRANSLATION protein_coding - CCDS22750.1 1 410.0 7.0 9.33 2.2 398.0 0.0 2,-2 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000019278 Dpep1 ENSMUST00000212773 ENSMUSP00000148609 TRANSLATION protein_coding stop - 3 187.0 4.0 4.5 0.0 152.2 0.0 2,-2 0.0014 7 -2.0 MINOR ENSMUSG00000033751 Gadd45gip1 ENSMUST00000036734 ENSMUSP00000037783 TRANSLATION protein_coding - CCDS22478.1 1 222.0 0.0 2.0 6.5 254.9 0.0 -2,1 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000063253 Scoc ENSMUST00000212031 ENSMUSP00000148647 TRANSLATION protein_coding - CCDS52608.1 1 82.0 0.0 1.75 22.1 97.3 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000063253 Scoc ENSMUST00000212947 - NO_TRANSLATION retained_intron ENSMUSG00000063253 Scoc ENSMUST00000167525 ENSMUSP00000128210 TRANSLATION protein_coding - CCDS85570.1 1 81.0 0.0 1.75 22.1 98.7 0.0 -4,-5 0.9923 3 12.0 ALTERNATIVE:1 ENSMUSG00000063253 Scoc ENSMUST00000212849 - NO_TRANSLATION retained_intron ENSMUSG00000063253 Scoc ENSMUST00000081506 ENSMUSP00000080221 TRANSLATION protein_coding - CCDS22453.1 1 125.0 0.0 1.75 5.5 95.5 0.0 -4,-5 0.3545 3 8.852 MINOR ENSMUSG00000063253 Scoc ENSMUST00000212500 ENSMUSP00000148753 TRANSLATION protein_coding stop - 5 35.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063253 Scoc ENSMUST00000212449 ENSMUSP00000148829 TRANSLATION protein_coding - - 3 47.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - 2.574 MINOR ENSMUSG00000063253 Scoc ENSMUST00000212905 ENSMUSP00000148577 TRANSLATION protein_coding - CCDS52608.1 3 82.0 0.0 1.75 22.1 97.3 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000063253 Scoc ENSMUST00000212871 - NO_TRANSLATION retained_intron ENSMUSG00000063253 Scoc ENSMUST00000212473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031749 St3gal2 ENSMUST00000034197 ENSMUSP00000034197 TRANSLATION protein_coding - CCDS22667.1 1 350.0 17.0 4.1 24.5 284.2 0.0 1,-4 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000031749 St3gal2 ENSMUST00000141464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031749 St3gal2 ENSMUST00000117534 ENSMUSP00000113900 TRANSLATION protein_coding - - 1 303.0 11.0 3.832 0.0 219.6 0.0 1,-4 0.0105 6 9.588 MINOR ENSMUSG00000031749 St3gal2 ENSMUST00000129639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031749 St3gal2 ENSMUST00000138332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060098 Prmt7 ENSMUST00000109296 ENSMUSP00000104919 TRANSLATION protein_coding stop - 3 113.0 15.0 2.7 0.0 0.0 0.0 -4,-5 0.0055 2 -2.0 MINOR ENSMUSG00000060098 Prmt7 ENSMUST00000134151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060098 Prmt7 ENSMUST00000153272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060098 Prmt7 ENSMUST00000071592 ENSMUSP00000071521 TRANSLATION protein_coding - CCDS22633.1 1 692.0 24.0 13.18 8.1 0.0 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000060098 Prmt7 ENSMUST00000109297 ENSMUSP00000104920 TRANSLATION protein_coding - - 1 217.0 24.0 4.55 0.0 0.0 0.0 -4,-5 0.0142 2 6.0 MINOR ENSMUSG00000060098 Prmt7 ENSMUST00000128201 ENSMUSP00000119992 TRANSLATION protein_coding start - 1 298.0 24.0 6.15 0.0 0.0 0.0 -4,-5 0.0168 3 -2.0 MINOR ENSMUSG00000060098 Prmt7 ENSMUST00000147063 - NO_TRANSLATION retained_intron ENSMUSG00000031494 Cd209a ENSMUST00000207979 ENSMUSP00000146702 TRANSLATION protein_coding - - 1 211.0 10.0 4.3 0.7 82.0 0.0 -4,-6 0.0884 - 16.5 MINOR ENSMUSG00000031494 Cd209a ENSMUST00000012847 ENSMUSP00000012847 TRANSLATION protein_coding - CCDS22073.1 1 238.0 10.0 5.05 3.4 82.0 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000031494 Cd209a ENSMUST00000208960 ENSMUSP00000146627 TRANSLATION protein_coding - - 5 179.0 10.0 4.05 0.0 82.0 0.0 -4,-5 0.0039 - 16.002 MINOR ENSMUSG00000031494 Cd209a ENSMUST00000207906 - NO_TRANSLATION retained_intron ENSMUSG00000052554 Defb34 ENSMUST00000064475 ENSMUSP00000064554 TRANSLATION protein_coding - CCDS52497.1 1 81.0 0.0 1.0 0.0 27.3 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031537 Ikbkb ENSMUST00000126439 - NO_TRANSLATION retained_intron ENSMUSG00000031537 Ikbkb ENSMUST00000132279 ENSMUSP00000120049 TRANSLATION protein_coding start - 2 35.0 0.0 0.75 0.0 41.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031537 Ikbkb ENSMUST00000131767 ENSMUSP00000120916 TRANSLATION protein_coding start/stop - 5 100.0 6.0 2.316 0.0 54.6 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000031537 Ikbkb ENSMUST00000126496 - NO_TRANSLATION retained_intron ENSMUSG00000031537 Ikbkb ENSMUST00000144895 - NO_TRANSLATION retained_intron ENSMUSG00000031537 Ikbkb ENSMUST00000135326 ENSMUSP00000138378 TRANSLATION nonsense_mediated_decay - - 1 442.0 21.0 10.58 0.0 185.5 0.0 -4,-5 0.0028 7 -2.0 MINOR ENSMUSG00000031537 Ikbkb ENSMUST00000144583 - NO_TRANSLATION retained_intron ENSMUSG00000031537 Ikbkb ENSMUST00000150259 - NO_TRANSLATION retained_intron ENSMUSG00000031537 Ikbkb ENSMUST00000063401 ENSMUSP00000064235 TRANSLATION protein_coding - CCDS22182.1 1 738.0 21.0 17.26 0.0 222.6 0.0 -4,-5 0.1377 16 16.602 MINOR ENSMUSG00000031537 Ikbkb ENSMUST00000149093 - NO_TRANSLATION retained_intron ENSMUSG00000031537 Ikbkb ENSMUST00000146212 - NO_TRANSLATION retained_intron ENSMUSG00000031537 Ikbkb ENSMUST00000125314 ENSMUSP00000138156 TRANSLATION nonsense_mediated_decay - - 1 442.0 21.0 10.58 0.0 185.5 0.0 -4,-5 0.0028 - -2.0 MINOR ENSMUSG00000031537 Ikbkb ENSMUST00000150214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031537 Ikbkb ENSMUST00000033939 ENSMUSP00000033939 TRANSLATION protein_coding - CCDS52522.1 1 757.0 21.0 17.26 11.2 245.9 0.0 -4,-5 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000079057 Cyp4v3 ENSMUST00000095328 ENSMUSP00000092966 TRANSLATION protein_coding - CCDS22276.1 1 525.0 31.0 8.38 7.0 407.9 0.0 0,-4 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000014786 Slc9a5 ENSMUST00000073149 ENSMUSP00000072893 TRANSLATION protein_coding - CCDS40457.1 1 898.0 0.0 7.0 0.9 290.5 0.0 2,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000014786 Slc9a5 ENSMUST00000212772 - NO_TRANSLATION retained_intron ENSMUSG00000013974 Mcemp1 ENSMUST00000014118 ENSMUSP00000014118 TRANSLATION protein_coding - CCDS22069.1 1 183.0 0.0 3.0 0.0 0.0 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000031820 Babam1 ENSMUST00000002473 ENSMUSP00000002473 TRANSLATION protein_coding - CCDS40381.1 1 333.0 0.0 5.78 4.1 0.0 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000031820 Babam1 ENSMUST00000213093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031820 Babam1 ENSMUST00000212769 ENSMUSP00000148639 TRANSLATION protein_coding start - 2 114.0 0.0 1.75 0.0 0.0 0.0 -4,-2 0.0105 2 -2.0 MINOR ENSMUSG00000031820 Babam1 ENSMUST00000212087 - NO_TRANSLATION retained_intron ENSMUSG00000031820 Babam1 ENSMUST00000212383 - NO_TRANSLATION retained_intron ENSMUSG00000031953 Tmem170 ENSMUST00000034431 ENSMUSP00000034431 TRANSLATION protein_coding - CCDS22681.1 1 144.0 0.0 2.0 12.3 137.2 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000063672 Nkx6-3 ENSMUST00000071588 ENSMUSP00000071517 TRANSLATION protein_coding - CCDS52524.1 1 262.0 0.0 1.4 19.6 76.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031962 Cdh15 ENSMUST00000034443 ENSMUSP00000034443 TRANSLATION protein_coding - CCDS22746.1 1 784.0 44.0 8.44 2.2 417.8 0.0 4,-1 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000031819 Emc8 ENSMUST00000180417 ENSMUSP00000137767 TRANSLATION nonsense_mediated_decay - - 1 167.0 0.0 1.74 0.0 124.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000031819 Emc8 ENSMUST00000181111 ENSMUSP00000138068 TRANSLATION protein_coding start - 5 128.0 0.0 3.03 0.0 111.6 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000031819 Emc8 ENSMUST00000181836 ENSMUSP00000137932 TRANSLATION protein_coding start - 3 143.0 0.0 3.61 0.0 81.9 0.0 -1,-4 0.0002 7 -2.0 MINOR ENSMUSG00000031819 Emc8 ENSMUST00000181402 - NO_TRANSLATION retained_intron ENSMUSG00000031819 Emc8 ENSMUST00000181950 ENSMUSP00000137970 TRANSLATION protein_coding - - 2 77.0 0.0 0.91 0.0 85.6 0.0 -4,-7 0.0 2 0.0 MINOR ENSMUSG00000031819 Emc8 ENSMUST00000034277 ENSMUSP00000034277 TRANSLATION protein_coding - CCDS22719.1 1 207.0 0.0 4.27 27.0 219.5 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000031819 Emc8 ENSMUST00000181334 ENSMUSP00000137850 TRANSLATION protein_coding stop - 3 114.0 0.0 1.74 0.0 125.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000031819 Emc8 ENSMUST00000180909 - NO_TRANSLATION retained_intron ENSMUSG00000043289 Mei4 ENSMUST00000189832 ENSMUSP00000140647 TRANSLATION protein_coding - - 1 312.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0339 - 0.0 MINOR ENSMUSG00000043289 Mei4 ENSMUST00000057067 ENSMUSP00000061341 TRANSLATION protein_coding - CCDS23371.1 1 389.0 0.0 0.0 7.6 0.0 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000043289 Mei4 ENSMUST00000189391 ENSMUSP00000139589 TRANSLATION protein_coding - - 1 290.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0282 - 0.0 MINOR ENSMUSG00000010205 Raver1 ENSMUST00000115487 ENSMUSP00000111150 TRANSLATION protein_coding - CCDS40550.1 1 748.0 0.0 3.75 3.2 74.6 0.0 -4,-5 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000042195 Slc35f2 ENSMUST00000216515 - NO_TRANSLATION retained_intron ENSMUSG00000042195 Slc35f2 ENSMUST00000048670 ENSMUSP00000046528 TRANSLATION protein_coding - CCDS40639.1 1 375.0 0.0 5.8 5.3 482.1 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000111448 Or8b48 ENSMUST00000217160 ENSMUSP00000150014 TRANSLATION protein_coding - CCDS23017.1 2 310.0 0.0 1.0 8.9 169.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041444 Arhgap32 ENSMUST00000174730 - NO_TRANSLATION retained_intron ENSMUSG00000041444 Arhgap32 ENSMUST00000174641 ENSMUSP00000133898 TRANSLATION protein_coding - CCDS57666.1 5 2089.0 0.0 6.05 2.9 207.3 0.0 -4,-5 1.0 43 13.0 PRINCIPAL:1 ENSMUSG00000041444 Arhgap32 ENSMUST00000168954 ENSMUSP00000128448 TRANSLATION protein_coding - CCDS22951.3 5 1740.0 0.0 6.05 2.9 152.1 0.0 -4,-5 0.4074 38 9.688 MINOR ENSMUSG00000041444 Arhgap32 ENSMUST00000183121 ENSMUSP00000138584 TRANSLATION protein_coding stop - 5 91.0 0.0 2.75 0.0 35.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000041444 Arhgap32 ENSMUST00000182310 ENSMUSP00000138636 TRANSLATION protein_coding start/stop - 5 180.0 0.0 0.0 0.0 22.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000041444 Arhgap32 ENSMUST00000182802 ENSMUSP00000138145 TRANSLATION protein_coding - CCDS22951.3 1 1740.0 0.0 6.05 2.9 152.1 0.0 -4,-5 0.4074 38 9.688 MINOR ENSMUSG00000041444 Arhgap32 ENSMUST00000174314 - NO_TRANSLATION retained_intron ENSMUSG00000035382 Pcsk7 ENSMUST00000216504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035382 Pcsk7 ENSMUST00000216614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035382 Pcsk7 ENSMUST00000214425 - NO_TRANSLATION retained_intron ENSMUSG00000035382 Pcsk7 ENSMUST00000216672 ENSMUSP00000150393 TRANSLATION protein_coding - CCDS40609.1 1 770.0 10.0 8.35 0.0 312.5 1.0 0,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000035382 Pcsk7 ENSMUST00000215535 - NO_TRANSLATION retained_intron ENSMUSG00000035382 Pcsk7 ENSMUST00000215189 ENSMUSP00000150500 TRANSLATION nonsense_mediated_decay - - 1 518.0 10.0 6.35 0.0 224.8 1.0 0,-2 0.005 - -2.0 MINOR ENSMUSG00000035382 Pcsk7 ENSMUST00000216514 - NO_TRANSLATION retained_intron ENSMUSG00000035382 Pcsk7 ENSMUST00000039059 ENSMUSP00000047508 TRANSLATION protein_coding - CCDS40609.1 1 770.0 10.0 8.35 0.0 312.5 1.0 0,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000035382 Pcsk7 ENSMUST00000213854 ENSMUSP00000150379 TRANSLATION nonsense_mediated_decay start - 3 86.0 2.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032114 Slc37a4 ENSMUST00000213626 - NO_TRANSLATION retained_intron ENSMUSG00000032114 Slc37a4 ENSMUST00000213388 ENSMUSP00000150843 TRANSLATION protein_coding - CCDS23108.1 1 429.0 0.0 3.095 33.4 160.5 12.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000032114 Slc37a4 ENSMUST00000215001 ENSMUSP00000151004 TRANSLATION protein_coding stop - 3 96.0 0.0 0.1 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000032114 Slc37a4 ENSMUST00000213268 ENSMUSP00000150753 TRANSLATION protein_coding - - 5 450.0 0.0 2.5325 30.0 152.2 12.0 -4,-2 0.7357 4 13.954 MINOR ENSMUSG00000032114 Slc37a4 ENSMUST00000215420 ENSMUSP00000148956 TRANSLATION protein_coding - CCDS23108.1 1 429.0 0.0 3.095 33.4 160.5 12.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000032114 Slc37a4 ENSMUST00000215121 ENSMUSP00000150902 TRANSLATION protein_coding stop - 5 102.0 0.0 1.2 0.0 44.8 1.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000032114 Slc37a4 ENSMUST00000165839 ENSMUSP00000129564 TRANSLATION protein_coding - CCDS23108.1 1 429.0 0.0 3.095 33.4 160.5 12.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000045812 Or4d5 ENSMUST00000213858 ENSMUSP00000150545 TRANSLATION protein_coding - CCDS23075.1 5 314.0 0.0 1.0 11.7 144.6 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045812 Or4d5 ENSMUST00000217536 ENSMUSP00000150287 TRANSLATION protein_coding - CCDS23075.1 3 314.0 0.0 1.0 11.7 144.6 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045812 Or4d5 ENSMUST00000214856 ENSMUSP00000151081 TRANSLATION protein_coding - CCDS23075.1 5 314.0 0.0 1.0 11.7 144.6 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045812 Or4d5 ENSMUST00000056795 ENSMUSP00000060787 TRANSLATION protein_coding - CCDS23075.1 - 314.0 0.0 1.0 11.7 144.6 6.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074123 Prr23a4 ENSMUST00000098460 ENSMUSP00000096060 TRANSLATION protein_coding - CCDS23429.1 - 186.0 0.0 0.0 0.0 82.2 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047995 Cypt4 ENSMUST00000053956 ENSMUSP00000054958 TRANSLATION protein_coding - CCDS22932.1 - 153.0 0.0 0.5 0.0 0.0 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000032456 Nmnat3 ENSMUST00000112935 ENSMUSP00000108557 TRANSLATION protein_coding - CCDS23423.1 1 245.0 22.0 4.68 1.1 134.5 0.0 -4,-2 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000032456 Nmnat3 ENSMUST00000112938 ENSMUSP00000108560 TRANSLATION protein_coding - - 1 126.0 11.0 3.68 0.0 85.9 0.0 -4,-2 0.0 4 7.086 MINOR ENSMUSG00000032456 Nmnat3 ENSMUST00000134253 ENSMUSP00000141111 TRANSLATION protein_coding stop - 3 56.0 8.0 1.5 0.0 42.7 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000032456 Nmnat3 ENSMUST00000141427 - NO_TRANSLATION retained_intron ENSMUSG00000032456 Nmnat3 ENSMUST00000129771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032456 Nmnat3 ENSMUST00000112937 ENSMUSP00000108559 TRANSLATION protein_coding - - 1 179.0 14.0 2.6 0.0 65.0 0.0 -4,-5 0.0 10 4.338 MINOR ENSMUSG00000032549 Rab6b ENSMUST00000189134 ENSMUSP00000149595 TRANSLATION protein_coding - - 3 80.0 8.0 2.33 0.0 94.9 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000032549 Rab6b ENSMUST00000035155 ENSMUSP00000035155 TRANSLATION protein_coding - CCDS23449.1 1 208.0 21.0 5.66 33.7 198.1 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000032174 Icam5 ENSMUST00000019616 ENSMUSP00000019616 TRANSLATION protein_coding - CCDS22891.1 1 917.0 0.0 6.78 7.5 92.8 0.0 0,-4 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000032577 Mapkapk3 ENSMUST00000192054 ENSMUSP00000141342 TRANSLATION protein_coding - CCDS85722.1 1 266.0 21.0 5.9375 0.0 176.8 0.0 -4,-5 0.0033 6 9.006 MINOR ENSMUSG00000032577 Mapkapk3 ENSMUST00000128175 - NO_TRANSLATION retained_intron ENSMUSG00000032577 Mapkapk3 ENSMUST00000035194 ENSMUSP00000035194 TRANSLATION protein_coding - CCDS23487.1 1 384.0 21.0 9.25 8.0 226.7 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000032577 Mapkapk3 ENSMUST00000134682 ENSMUSP00000120848 TRANSLATION protein_coding stop - 2 85.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032577 Mapkapk3 ENSMUST00000141674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032577 Mapkapk3 ENSMUST00000143487 - NO_TRANSLATION retained_intron ENSMUSG00000032577 Mapkapk3 ENSMUST00000155860 - NO_TRANSLATION retained_intron ENSMUSG00000032577 Mapkapk3 ENSMUST00000141596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032733 Snx33 ENSMUST00000050916 ENSMUSP00000060225 TRANSLATION protein_coding - CCDS23212.1 1 574.0 0.0 1.8 9.4 485.7 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000032092 Mpzl2 ENSMUST00000215886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032092 Mpzl2 ENSMUST00000034600 ENSMUSP00000034600 TRANSLATION protein_coding - CCDS23126.1 1 215.0 0.0 4.65 10.3 76.7 1.0 2,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000032092 Mpzl2 ENSMUST00000215292 ENSMUSP00000150054 TRANSLATION protein_coding stop - 5 170.0 0.0 2.15 0.0 69.5 0.0 0,-3 0.0008 1 -2.0 MINOR ENSMUSG00000032092 Mpzl2 ENSMUST00000217097 ENSMUSP00000150395 TRANSLATION protein_coding - - 5 135.0 0.0 3.5 0.0 41.9 1.0 -4,-6 0.0037 3 6.978 MINOR ENSMUSG00000032092 Mpzl2 ENSMUST00000216777 - NO_TRANSLATION retained_intron ENSMUSG00000061614 Or7g27 ENSMUST00000071259 ENSMUSP00000071239 TRANSLATION protein_coding - CCDS22854.1 - 312.0 0.0 1.0 9.1 190.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061614 Or7g27 ENSMUST00000213344 ENSMUSP00000149986 TRANSLATION protein_coding - CCDS22854.1 5 312.0 0.0 1.0 9.1 190.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061614 Or7g27 ENSMUST00000215572 ENSMUSP00000150474 TRANSLATION protein_coding - CCDS22854.1 3 312.0 0.0 1.0 9.1 190.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096555 Or8g27 ENSMUST00000213908 ENSMUSP00000150072 TRANSLATION protein_coding - CCDS23040.1 2 311.0 0.0 1.0 11.4 160.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096555 Or8g27 ENSMUST00000079650 ENSMUSP00000078595 TRANSLATION protein_coding - CCDS23040.1 - 311.0 0.0 1.0 11.4 160.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096555 Or8g27 ENSMUST00000215306 ENSMUSP00000150471 TRANSLATION protein_coding - CCDS23040.1 5 311.0 0.0 1.0 11.4 160.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032498 Mlh1 ENSMUST00000128795 - NO_TRANSLATION retained_intron ENSMUSG00000032498 Mlh1 ENSMUST00000135695 ENSMUSP00000119170 TRANSLATION nonsense_mediated_decay start - 3 94.0 1.0 2.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032498 Mlh1 ENSMUST00000200145 - NO_TRANSLATION retained_intron ENSMUSG00000032498 Mlh1 ENSMUST00000199404 ENSMUSP00000142563 TRANSLATION protein_coding start/stop - 3 155.0 0.0 3.35 0.0 114.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032498 Mlh1 ENSMUST00000123869 - NO_TRANSLATION retained_intron ENSMUSG00000032498 Mlh1 ENSMUST00000035079 ENSMUSP00000035079 TRANSLATION protein_coding - CCDS40784.1 1 760.0 11.0 15.71 10.3 494.4 0.0 -4,-6 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000032498 Mlh1 ENSMUST00000134316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032498 Mlh1 ENSMUST00000135218 ENSMUSP00000143786 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000032498 Mlh1 ENSMUST00000123713 - NO_TRANSLATION retained_intron ENSMUSG00000055720 Ubl7 ENSMUST00000163329 ENSMUSP00000126019 TRANSLATION protein_coding - CCDS23234.1 5 380.0 0.0 5.98 26.3 60.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000055720 Ubl7 ENSMUST00000217129 ENSMUSP00000150292 TRANSLATION protein_coding stop - 3 157.0 0.0 3.68 0.0 39.7 0.0 -4,-5 0.0013 3 -2.0 MINOR ENSMUSG00000055720 Ubl7 ENSMUST00000217180 ENSMUSP00000149390 TRANSLATION nonsense_mediated_decay - - 3 110.0 0.0 2.33 0.0 39.7 0.0 -4,-5 0.0013 3 -2.0 MINOR ENSMUSG00000055720 Ubl7 ENSMUST00000216841 ENSMUSP00000149748 TRANSLATION protein_coding - CCDS23234.1 5 380.0 0.0 5.98 26.3 60.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000055720 Ubl7 ENSMUST00000215592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055720 Ubl7 ENSMUST00000213654 ENSMUSP00000150631 TRANSLATION protein_coding stop - 3 202.0 0.0 4.18 0.0 36.3 0.0 -4,-5 0.0018 3 -2.0 MINOR ENSMUSG00000055720 Ubl7 ENSMUST00000216260 ENSMUSP00000149639 TRANSLATION protein_coding stop - 3 129.0 0.0 2.93 0.0 39.7 0.0 -4,-5 0.0013 3 -2.0 MINOR ENSMUSG00000055720 Ubl7 ENSMUST00000215751 - NO_TRANSLATION retained_intron ENSMUSG00000055720 Ubl7 ENSMUST00000217132 ENSMUSP00000149608 TRANSLATION protein_coding stop - 5 238.0 0.0 4.98 0.0 39.7 0.0 -4,-5 0.0013 3 -2.0 MINOR ENSMUSG00000055720 Ubl7 ENSMUST00000214086 ENSMUSP00000149613 TRANSLATION protein_coding stop - 3 70.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055720 Ubl7 ENSMUST00000216925 ENSMUSP00000150925 TRANSLATION protein_coding - CCDS23234.1 1 380.0 0.0 5.98 26.3 60.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000055720 Ubl7 ENSMUST00000215936 - NO_TRANSLATION retained_intron ENSMUSG00000038957 Edc3 ENSMUST00000137245 ENSMUSP00000123317 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 1.0 0.0 36.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038957 Edc3 ENSMUST00000142807 ENSMUSP00000123505 TRANSLATION protein_coding stop - 3 65.0 0.0 1.33 0.0 42.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038957 Edc3 ENSMUST00000043990 ENSMUSP00000049146 TRANSLATION protein_coding - CCDS23231.1 1 508.0 0.0 4.03 20.7 318.7 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000032281 Acsbg1 ENSMUST00000034822 ENSMUSP00000034822 TRANSLATION protein_coding - CCDS23192.1 1 721.0 23.0 5.949 4.0 329.5 0.0 -4,-5 1.0 23 20.0 PRINCIPAL:1 ENSMUSG00000032281 Acsbg1 ENSMUST00000128624 ENSMUSP00000121622 TRANSLATION protein_coding stop - 3 127.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032281 Acsbg1 ENSMUST00000132914 - NO_TRANSLATION retained_intron ENSMUSG00000032281 Acsbg1 ENSMUST00000138315 ENSMUSP00000118133 TRANSLATION protein_coding stop - 3 65.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000032281 Acsbg1 ENSMUST00000128163 ENSMUSP00000119551 TRANSLATION protein_coding stop - 2 110.0 0.0 0.63 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000066319 Rtp3 ENSMUST00000084922 ENSMUSP00000081985 TRANSLATION protein_coding - - 5 474.0 2.0 0.0 0.0 89.7 1.0 -4,-5 0.7186 - 8.0 PRINCIPAL:1 ENSMUSG00000066319 Rtp3 ENSMUST00000198702 ENSMUSP00000143100 TRANSLATION protein_coding stop - 3 81.0 2.0 0.0 0.0 27.6 0.0 -4,-5 0.0021 - -2.0 MINOR ENSMUSG00000066319 Rtp3 ENSMUST00000199891 ENSMUSP00000143305 TRANSLATION protein_coding - CCDS81087.1 5 474.0 2.0 0.0 0.0 89.7 1.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000032322 Pstpip1 ENSMUST00000147360 - NO_TRANSLATION retained_intron ENSMUSG00000032322 Pstpip1 ENSMUST00000142894 - NO_TRANSLATION retained_intron ENSMUSG00000032322 Pstpip1 ENSMUST00000059206 ENSMUSP00000055823 TRANSLATION protein_coding - CCDS40645.1 1 415.0 0.0 9.3 15.6 111.8 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000032322 Pstpip1 ENSMUST00000132800 - NO_TRANSLATION retained_intron ENSMUSG00000032322 Pstpip1 ENSMUST00000138646 - NO_TRANSLATION retained_intron ENSMUSG00000032322 Pstpip1 ENSMUST00000144638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032322 Pstpip1 ENSMUST00000135103 - NO_TRANSLATION retained_intron ENSMUSG00000001942 Siae ENSMUST00000215678 - NO_TRANSLATION retained_intron ENSMUSG00000001942 Siae ENSMUST00000217567 - NO_TRANSLATION retained_intron ENSMUSG00000001942 Siae ENSMUST00000215829 ENSMUSP00000149220 TRANSLATION protein_coding stop - 5 111.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0204 - -2.0 MINOR ENSMUSG00000001942 Siae ENSMUST00000215474 ENSMUSP00000149505 TRANSLATION protein_coding - CCDS22983.1 1 541.0 0.0 0.0 0.1 0.0 0.0 4,-3 0.3614 8 0.0 PRINCIPAL:3 ENSMUSG00000001942 Siae ENSMUST00000002007 ENSMUSP00000002007 TRANSLATION protein_coding - - 1 469.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5938 7 0.0 ALTERNATIVE:2 ENSMUSG00000001942 Siae ENSMUST00000213964 ENSMUSP00000149029 TRANSLATION protein_coding start - 3 134.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0149 1 -2.0 MINOR ENSMUSG00000001942 Siae ENSMUST00000213126 ENSMUSP00000150641 TRANSLATION protein_coding - - 5 506.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0723 7 0.0 ALTERNATIVE:2 ENSMUSG00000032093 Cd3e ENSMUST00000214582 - NO_TRANSLATION retained_intron ENSMUSG00000032093 Cd3e ENSMUST00000214081 - NO_TRANSLATION retained_intron ENSMUSG00000032093 Cd3e ENSMUST00000102832 ENSMUSP00000099896 TRANSLATION protein_coding - CCDS23125.1 1 189.0 0.0 3.198 2.9 145.0 0.0 3,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000032093 Cd3e ENSMUST00000217486 - NO_TRANSLATION retained_intron ENSMUSG00000032017 Grik4 ENSMUST00000034515 ENSMUSP00000034515 TRANSLATION protein_coding - CCDS23089.1 5 956.0 14.0 15.34 21.1 514.6 3.0 2,-2 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000032017 Grik4 ENSMUST00000114865 ENSMUSP00000110515 TRANSLATION protein_coding - CCDS23089.1 1 956.0 14.0 15.34 21.1 514.6 3.0 2,-2 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000046460 Sh2d7 ENSMUST00000060242 ENSMUSP00000053690 TRANSLATION protein_coding - CCDS23190.1 1 284.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0593 1 0.0 MINOR ENSMUSG00000046460 Sh2d7 ENSMUST00000118413 ENSMUSP00000113298 TRANSLATION protein_coding - - 1 458.0 0.0 3.3 1.4 56.2 0.0 -4,-5 0.7247 2 13.0 PRINCIPAL:1 ENSMUSG00000046460 Sh2d7 ENSMUST00000238614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062794 Zfp599 ENSMUST00000086281 ENSMUSP00000083462 TRANSLATION protein_coding - CCDS40561.1 1 548.0 43.0 1.0 0.0 269.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000063488 Zkscan7 ENSMUST00000216429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063488 Zkscan7 ENSMUST00000215872 ENSMUSP00000150648 TRANSLATION protein_coding - - 5 283.0 0.0 0.8 0.0 136.8 0.0 -4,-5 0.0 - 2.664 MINOR ENSMUSG00000063488 Zkscan7 ENSMUST00000063980 ENSMUSP00000071695 TRANSLATION protein_coding - CCDS52970.1 1 718.0 43.0 1.8 0.1 341.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000037405 Icam1 ENSMUST00000086399 ENSMUSP00000083587 TRANSLATION protein_coding - CCDS22889.1 1 537.0 0.0 4.9 0.1 160.5 0.0 3,-1 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000037405 Icam1 ENSMUST00000215003 - NO_TRANSLATION retained_intron ENSMUSG00000032333 Stoml1 ENSMUST00000216187 - NO_TRANSLATION retained_intron ENSMUSG00000032333 Stoml1 ENSMUST00000217165 ENSMUSP00000151093 TRANSLATION nonsense_mediated_decay - - 2 44.0 0.0 0.0 0.0 0.0 0.0 -2,0 0.0004 - -2.0 MINOR ENSMUSG00000032333 Stoml1 ENSMUST00000215079 - NO_TRANSLATION retained_intron ENSMUSG00000032333 Stoml1 ENSMUST00000215488 ENSMUSP00000150360 TRANSLATION nonsense_mediated_decay - - 2 42.0 0.0 0.0 0.0 0.0 0.0 -2,0 0.0004 - -2.0 MINOR ENSMUSG00000032333 Stoml1 ENSMUST00000217026 - NO_TRANSLATION retained_intron ENSMUSG00000032333 Stoml1 ENSMUST00000216864 ENSMUSP00000150422 TRANSLATION nonsense_mediated_decay start - 3 68.0 0.0 0.16 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032333 Stoml1 ENSMUST00000034883 ENSMUSP00000034883 TRANSLATION protein_coding - CCDS23241.1 1 399.0 0.0 2.96 7.6 118.6 2.0 -4,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000032333 Stoml1 ENSMUST00000216877 ENSMUSP00000150531 TRANSLATION nonsense_mediated_decay - - 1 94.0 0.0 0.6 0.0 0.0 2.0 -4,-2 0.0013 1 -2.0 MINOR ENSMUSG00000001774 Chordc1 ENSMUST00000216666 - NO_TRANSLATION retained_intron ENSMUSG00000001774 Chordc1 ENSMUST00000217031 ENSMUSP00000150569 TRANSLATION protein_coding stop - 3 256.0 16.0 2.65 0.0 195.4 0.0 -4,-6 0.0 12 -2.0 MINOR ENSMUSG00000001774 Chordc1 ENSMUST00000216526 - NO_TRANSLATION retained_intron ENSMUSG00000001774 Chordc1 ENSMUST00000215421 - NO_TRANSLATION retained_intron ENSMUSG00000001774 Chordc1 ENSMUST00000213605 ENSMUSP00000149900 TRANSLATION protein_coding - - 2 119.0 8.0 2.15 0.0 103.9 0.0 -4,-6 0.0 7 3.636 MINOR ENSMUSG00000001774 Chordc1 ENSMUST00000216800 ENSMUSP00000150443 TRANSLATION nonsense_mediated_decay - - 3 113.0 8.0 2.15 0.0 103.9 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000001774 Chordc1 ENSMUST00000217083 ENSMUSP00000150527 TRANSLATION nonsense_mediated_decay - - 5 184.0 9.0 2.15 1.0 103.9 0.0 -4,-6 0.0096 8 -2.0 MINOR ENSMUSG00000001774 Chordc1 ENSMUST00000214441 - NO_TRANSLATION retained_intron ENSMUSG00000001774 Chordc1 ENSMUST00000001825 ENSMUSP00000001825 TRANSLATION protein_coding - CCDS22842.1 1 331.0 16.0 3.666 15.7 250.2 0.0 -4,-6 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000070311 Or8c16 ENSMUST00000212992 ENSMUSP00000148501 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 11.5 158.3 5.0 -4,-7 0.8809 - 11.0 ALTERNATIVE:1 ENSMUSG00000070311 Or8c16 ENSMUST00000093866 ENSMUSP00000091389 TRANSLATION protein_coding - CCDS23001.1 - 313.0 0.0 1.0 11.5 158.3 5.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000032119 Hinfp ENSMUST00000214660 ENSMUSP00000150281 TRANSLATION protein_coding stop - 5 95.0 7.0 0.297 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032119 Hinfp ENSMUST00000217137 - NO_TRANSLATION retained_intron ENSMUSG00000032119 Hinfp ENSMUST00000217205 - NO_TRANSLATION retained_intron ENSMUSG00000032119 Hinfp ENSMUST00000216508 ENSMUSP00000149879 TRANSLATION protein_coding - CCDS23102.1 1 503.0 39.0 3.742 0.0 65.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000032119 Hinfp ENSMUST00000215637 - NO_TRANSLATION retained_intron ENSMUSG00000032119 Hinfp ENSMUST00000215665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032119 Hinfp ENSMUST00000034629 ENSMUSP00000034629 TRANSLATION protein_coding stop - 1 404.0 39.0 3.742 0.0 65.6 0.0 -4,-5 0.0683 - -2.0 MINOR ENSMUSG00000032119 Hinfp ENSMUST00000217605 - NO_TRANSLATION retained_intron ENSMUSG00000031922 Cep57 ENSMUST00000142494 ENSMUSP00000114749 TRANSLATION nonsense_mediated_decay - - 1 296.0 0.0 0.0 0.0 216.1 0.0 -3,-6 0.0 3 -2.0 MINOR ENSMUSG00000031922 Cep57 ENSMUST00000144484 ENSMUSP00000114940 TRANSLATION nonsense_mediated_decay - - 1 122.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000031922 Cep57 ENSMUST00000148086 ENSMUSP00000114665 TRANSLATION protein_coding - - 1 473.0 0.0 2.264 6.9 293.8 0.0 -4,-7 1.0 4 9.832 PRINCIPAL:4 ENSMUSG00000031922 Cep57 ENSMUST00000034398 ENSMUSP00000034398 TRANSLATION protein_coding - CCDS52724.1 1 500.0 0.0 2.264 4.9 293.8 0.0 -3,-6 0.9332 4 9.154 ALTERNATIVE:1 ENSMUSG00000031922 Cep57 ENSMUST00000148904 - NO_TRANSLATION retained_intron ENSMUSG00000031922 Cep57 ENSMUST00000124524 - NO_TRANSLATION retained_intron ENSMUSG00000031922 Cep57 ENSMUST00000151878 ENSMUSP00000116847 TRANSLATION protein_coding start/stop - 3 231.0 0.0 0.0 0.0 137.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031922 Cep57 ENSMUST00000147115 ENSMUSP00000116931 TRANSLATION protein_coding - CCDS80955.1 1 474.0 0.0 2.264 0.0 293.8 0.0 -3,-6 0.5004 4 7.832 MINOR ENSMUSG00000031922 Cep57 ENSMUST00000124883 ENSMUSP00000119081 TRANSLATION protein_coding - - 1 351.0 0.0 2.264 0.1 179.4 0.0 -4,-5 0.0308 3 6.832 MINOR ENSMUSG00000031922 Cep57 ENSMUST00000134746 ENSMUSP00000116713 TRANSLATION nonsense_mediated_decay - - 5 210.0 0.0 0.0 0.0 170.5 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000031922 Cep57 ENSMUST00000131425 - NO_TRANSLATION retained_intron ENSMUSG00000031922 Cep57 ENSMUST00000150893 ENSMUSP00000115338 TRANSLATION protein_coding stop - 1 282.0 0.0 2.33 0.0 179.4 0.0 -4,-5 0.018 3 -2.0 MINOR ENSMUSG00000032566 Nudt16l2 ENSMUST00000035180 ENSMUSP00000035180 TRANSLATION protein_coding - CCDS23463.1 1 206.0 9.0 3.0 0.0 0.0 0.0 -4,-5 0.9312 3 12.0 PRINCIPAL:1 ENSMUSG00000032566 Nudt16l2 ENSMUST00000190661 ENSMUSP00000139516 TRANSLATION protein_coding - - 1 169.0 8.0 2.0 0.0 0.0 0.0 -4,-5 0.0087 3 9.336 MINOR ENSMUSG00000010067 Rassf1 ENSMUST00000144129 - NO_TRANSLATION retained_intron ENSMUSG00000010067 Rassf1 ENSMUST00000129320 - NO_TRANSLATION retained_intron ENSMUSG00000010067 Rassf1 ENSMUST00000125386 - NO_TRANSLATION retained_intron ENSMUSG00000010067 Rassf1 ENSMUST00000156198 ENSMUSP00000117722 TRANSLATION nonsense_mediated_decay - - 5 84.0 4.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010067 Rassf1 ENSMUST00000122225 ENSMUSP00000113252 TRANSLATION protein_coding - - 5 344.0 8.0 3.3 9.9 133.4 0.0 -4,-5 0.6661 2 18.988 MINOR ENSMUSG00000010067 Rassf1 ENSMUST00000093786 ENSMUSP00000091301 TRANSLATION protein_coding - CCDS57699.1 1 340.0 8.0 3.3 9.9 164.8 0.0 -4,-5 1.0 2 20.872 PRINCIPAL:1 ENSMUSG00000010067 Rassf1 ENSMUST00000010211 ENSMUSP00000010211 TRANSLATION protein_coding - CCDS23494.1 1 270.0 0.0 2.5 13.4 133.4 0.0 -4,-5 0.7647 2 12.514 MINOR ENSMUSG00000010067 Rassf1 ENSMUST00000125080 - NO_TRANSLATION retained_intron ENSMUSG00000010067 Rassf1 ENSMUST00000121635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010067 Rassf1 ENSMUST00000191832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032562 Gnai2 ENSMUST00000195231 - NO_TRANSLATION retained_intron ENSMUSG00000032562 Gnai2 ENSMUST00000193394 ENSMUSP00000141472 TRANSLATION protein_coding stop - 3 160.0 10.0 3.5 0.0 157.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000032562 Gnai2 ENSMUST00000193835 - NO_TRANSLATION retained_intron ENSMUSG00000032562 Gnai2 ENSMUST00000055704 ENSMUSP00000057543 TRANSLATION protein_coding - CCDS23502.1 1 355.0 24.0 7.75 36.9 418.8 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000032562 Gnai2 ENSMUST00000192837 ENSMUSP00000141929 TRANSLATION protein_coding - - 5 85.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000032562 Gnai2 ENSMUST00000195762 - NO_TRANSLATION retained_intron ENSMUSG00000032562 Gnai2 ENSMUST00000192615 ENSMUSP00000142326 TRANSLATION protein_coding - CCDS23502.1 1 355.0 24.0 7.75 36.9 418.8 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000032562 Gnai2 ENSMUST00000193876 ENSMUSP00000142060 TRANSLATION protein_coding stop - 5 39.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032562 Gnai2 ENSMUST00000193372 - NO_TRANSLATION retained_intron ENSMUSG00000032562 Gnai2 ENSMUST00000193538 - NO_TRANSLATION retained_intron ENSMUSG00000059303 Or7g21 ENSMUST00000215981 ENSMUSP00000150026 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 6.0 170.9 7.0 -4,-7 0.8738 - 10.0 ALTERNATIVE:1 ENSMUSG00000059303 Or7g21 ENSMUST00000074986 ENSMUSP00000074514 TRANSLATION protein_coding - CCDS22852.1 - 317.0 0.0 1.0 6.0 170.9 7.0 -4,-7 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000059303 Or7g21 ENSMUST00000212730 ENSMUSP00000148738 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 6.0 170.9 7.0 -4,-7 0.8738 - 10.0 ALTERNATIVE:1 ENSMUSG00000025647 Shisa5 ENSMUST00000198295 ENSMUSP00000143721 TRANSLATION protein_coding stop - 3 70.0 3.0 1.0 0.0 64.5 5.0 -1,-5 0.0497 - -2.0 MINOR ENSMUSG00000025647 Shisa5 ENSMUST00000026737 ENSMUSP00000026737 TRANSLATION protein_coding - CCDS23543.1 1 235.0 3.0 0.757 0.0 157.6 5.0 4,-1 0.2574 - 7.542 MINOR ENSMUSG00000025647 Shisa5 ENSMUST00000200629 ENSMUSP00000142404 TRANSLATION protein_coding stop - 2 72.0 3.0 1.0 0.0 67.5 5.0 -1,-5 0.0497 - -2.0 MINOR ENSMUSG00000025647 Shisa5 ENSMUST00000112059 ENSMUSP00000107690 TRANSLATION protein_coding - CCDS72309.1 1 236.0 3.0 0.592 0.0 157.3 5.0 4,-1 0.2097 - 6.552 MINOR ENSMUSG00000025647 Shisa5 ENSMUST00000198376 ENSMUSP00000143374 TRANSLATION protein_coding stop - 2 83.0 3.0 1.0 0.0 83.9 5.0 -1,-5 0.0497 - -2.0 MINOR ENSMUSG00000025647 Shisa5 ENSMUST00000198591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025647 Shisa5 ENSMUST00000197483 ENSMUSP00000143613 TRANSLATION protein_coding - - 3 133.0 3.0 1.0 5.1 97.6 5.0 -1,-5 0.7937 - 11.0 ALTERNATIVE:1 ENSMUSG00000025647 Shisa5 ENSMUST00000154184 ENSMUSP00000128901 TRANSLATION protein_coding - CCDS40771.1 1 132.0 3.0 1.0 5.1 97.6 5.0 -1,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000025647 Shisa5 ENSMUST00000198708 ENSMUSP00000142978 TRANSLATION protein_coding - - 5 133.0 3.0 1.0 5.1 97.6 5.0 -1,-5 0.7937 - 11.0 ALTERNATIVE:1 ENSMUSG00000025647 Shisa5 ENSMUST00000198281 ENSMUSP00000143581 TRANSLATION protein_coding stop - 5 73.0 0.0 0.132 0.0 40.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000025647 Shisa5 ENSMUST00000197099 ENSMUSP00000143648 TRANSLATION protein_coding - - 3 167.0 3.0 1.0 0.0 115.0 5.0 -4,-6 0.043 - 9.0 MINOR ENSMUSG00000025647 Shisa5 ENSMUST00000197194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025647 Shisa5 ENSMUST00000198639 - NO_TRANSLATION retained_intron ENSMUSG00000025647 Shisa5 ENSMUST00000196954 ENSMUSP00000143599 TRANSLATION protein_coding - - 3 133.0 3.0 1.0 5.1 97.6 5.0 -1,-5 0.7937 - 11.0 ALTERNATIVE:1 ENSMUSG00000025647 Shisa5 ENSMUST00000200366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025647 Shisa5 ENSMUST00000197689 ENSMUSP00000142874 TRANSLATION protein_coding stop - 5 63.0 3.0 1.0 0.0 59.2 5.0 -1,-5 0.0511 - -2.0 MINOR ENSMUSG00000025647 Shisa5 ENSMUST00000199288 - NO_TRANSLATION retained_intron ENSMUSG00000025647 Shisa5 ENSMUST00000199868 ENSMUSP00000142867 TRANSLATION protein_coding start - 1 137.0 3.0 1.0 0.0 99.4 5.0 -2,-5 0.0546 - -2.0 MINOR ENSMUSG00000025647 Shisa5 ENSMUST00000200515 ENSMUSP00000142835 TRANSLATION protein_coding - - 1 171.0 3.0 1.0 0.0 112.5 5.0 -4,-2 0.0458 - 9.0 MINOR ENSMUSG00000032110 Acrv1 ENSMUST00000184160 - NO_TRANSLATION retained_intron ENSMUSG00000032110 Acrv1 ENSMUST00000034620 ENSMUSP00000034620 TRANSLATION protein_coding - CCDS22971.1 1 261.0 0.0 2.0 0.3 0.0 0.0 2,-1 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000042688 Mapk6 ENSMUST00000174034 - NO_TRANSLATION retained_intron ENSMUSG00000042688 Mapk6 ENSMUST00000172665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042688 Mapk6 ENSMUST00000172946 - NO_TRANSLATION retained_intron ENSMUSG00000042688 Mapk6 ENSMUST00000173460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042688 Mapk6 ENSMUST00000168937 ENSMUSP00000129024 TRANSLATION protein_coding - CCDS23342.1 5 720.0 17.0 3.8 24.3 233.9 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000042688 Mapk6 ENSMUST00000173230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042688 Mapk6 ENSMUST00000049355 ENSMUSP00000040315 TRANSLATION protein_coding - CCDS23342.1 1 720.0 17.0 3.8 24.3 233.9 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000032567 Aste1 ENSMUST00000167674 ENSMUSP00000131164 TRANSLATION protein_coding - CCDS52905.1 1 159.0 0.0 0.0 0.3 0.0 0.0 -4,-6 0.1798 - 0.0 ALTERNATIVE:2 ENSMUSG00000032567 Aste1 ENSMUST00000123807 ENSMUSP00000149596 TRANSLATION protein_coding - - 2 611.0 0.0 0.0 0.3 0.0 0.0 -4,-7 0.1511 - 0.0 ALTERNATIVE:2 ENSMUSG00000032567 Aste1 ENSMUST00000035181 ENSMUSP00000035181 TRANSLATION protein_coding - CCDS23465.1 1 672.0 0.0 0.0 2.6 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000032567 Aste1 ENSMUST00000176597 - NO_TRANSLATION retained_intron ENSMUSG00000032567 Aste1 ENSMUST00000189758 ENSMUSP00000139854 TRANSLATION nonsense_mediated_decay start - 5 103.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.011 - -2.0 MINOR ENSMUSG00000032567 Aste1 ENSMUST00000176940 ENSMUSP00000135856 TRANSLATION protein_coding - - 5 323.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0339 - 0.0 ALTERNATIVE:2 ENSMUSG00000032567 Aste1 ENSMUST00000177402 ENSMUSP00000135318 TRANSLATION nonsense_mediated_decay start - 5 103.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.011 - -2.0 MINOR ENSMUSG00000032567 Aste1 ENSMUST00000190934 - NO_TRANSLATION retained_intron ENSMUSG00000032567 Aste1 ENSMUST00000137208 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032567 Aste1 ENSMUST00000176350 ENSMUSP00000139429 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.011 - -2.0 MINOR ENSMUSG00000032567 Aste1 ENSMUST00000216711 - NO_TRANSLATION retained_intron ENSMUSG00000074502 Ubtfl1 ENSMUST00000169398 ENSMUSP00000126540 TRANSLATION protein_coding - CCDS40540.1 1 394.0 0.0 0.0 0.3 61.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074502 Ubtfl1 ENSMUST00000164441 ENSMUSP00000129611 TRANSLATION protein_coding - CCDS40540.1 1 394.0 0.0 0.0 0.3 61.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074502 Ubtfl1 ENSMUST00000098973 ENSMUSP00000096572 TRANSLATION protein_coding - CCDS40540.1 - 394.0 0.0 0.0 0.3 61.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000032087 Dscaml1 ENSMUST00000216340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032087 Dscaml1 ENSMUST00000239471 ENSMUSP00000159348 TRANSLATION protein_coding - CCDS40608.1 - 2111.0 0.0 16.698 2.0 630.7 0.0 -4,-7 0.946 13 8.714 ALTERNATIVE:2 ENSMUSG00000032087 Dscaml1 ENSMUST00000217335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032087 Dscaml1 ENSMUST00000034592 ENSMUSP00000034592 TRANSLATION protein_coding - - 1 2053.0 0.0 16.698 2.4 630.7 0.0 3,-1 1.0 13 9.0 PRINCIPAL:4 ENSMUSG00000032087 Dscaml1 ENSMUST00000239429 ENSMUSP00000159287 TRANSLATION protein_coding - CCDS40608.1 - 2111.0 0.0 16.698 2.0 630.7 0.0 -4,-7 0.946 13 8.714 ALTERNATIVE:2 ENSMUSG00000032087 Dscaml1 ENSMUST00000215027 - NO_TRANSLATION retained_intron ENSMUSG00000032087 Dscaml1 ENSMUST00000214151 - NO_TRANSLATION retained_intron ENSMUSG00000032087 Dscaml1 ENSMUST00000216685 ENSMUSP00000149247 TRANSLATION nonsense_mediated_decay start - 1 286.0 0.0 3.91 0.0 138.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032087 Dscaml1 ENSMUST00000217538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032087 Dscaml1 ENSMUST00000213919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032087 Dscaml1 ENSMUST00000216078 ENSMUSP00000148905 TRANSLATION nonsense_mediated_decay start - 5 34.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.007 1 -2.0 MINOR ENSMUSG00000074183 Gsta1 ENSMUST00000127192 - NO_TRANSLATION retained_intron ENSMUSG00000074183 Gsta1 ENSMUST00000098537 ENSMUSP00000096139 TRANSLATION protein_coding - CCDS23358.1 1 223.0 10.0 5.25 19.0 144.5 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000044860 Gm1123 ENSMUST00000076730 ENSMUSP00000076020 TRANSLATION protein_coding - CCDS40737.1 1 390.0 0.0 6.0 0.1 197.3 0.0 -1,-4 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000060114 Or8b46 ENSMUST00000215122 ENSMUSP00000149263 TRANSLATION protein_coding - CCDS23016.1 5 310.0 0.0 1.0 9.9 166.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032381 Ciao2a ENSMUST00000034945 ENSMUSP00000034945 TRANSLATION protein_coding - CCDS23302.1 1 160.0 0.0 3.6 17.0 34.1 0.0 -2,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000041523 Upk2 ENSMUST00000047740 ENSMUSP00000040481 TRANSLATION protein_coding - CCDS23112.1 1 184.0 0.0 0.0 11.0 362.9 0.0 4,-1 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000032419 Tbx18 ENSMUST00000186698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032419 Tbx18 ENSMUST00000034991 ENSMUSP00000034991 TRANSLATION protein_coding - CCDS40718.1 1 613.0 0.0 4.55 9.8 266.3 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025234 Arih1 ENSMUST00000165322 ENSMUSP00000131516 TRANSLATION protein_coding - - 5 476.0 26.0 10.83 0.0 80.2 0.0 -4,-5 0.0215 12 16.8 MINOR ENSMUSG00000025234 Arih1 ENSMUST00000168456 - NO_TRANSLATION retained_intron ENSMUSG00000025234 Arih1 ENSMUST00000171856 ENSMUSP00000131140 TRANSLATION nonsense_mediated_decay start - 3 25.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025234 Arih1 ENSMUST00000171975 ENSMUSP00000126531 TRANSLATION protein_coding - CCDS52817.1 1 555.0 26.0 11.43 13.7 80.2 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025234 Arih1 ENSMUST00000168497 - NO_TRANSLATION retained_intron ENSMUSG00000025234 Arih1 ENSMUST00000026264 ENSMUSP00000026264 TRANSLATION nonsense_mediated_decay - - 5 381.0 16.0 4.93 0.0 29.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000025234 Arih1 ENSMUST00000168982 - NO_TRANSLATION retained_intron ENSMUSG00000025645 Ccdc51 ENSMUST00000026735 ENSMUSP00000026735 TRANSLATION protein_coding - CCDS52931.1 1 406.0 0.0 1.6 7.3 0.0 0.0 -4,-1 1.0 11 8.0 PRINCIPAL:1 ENSMUSG00000044938 Klhl31 ENSMUST00000057781 ENSMUSP00000059643 TRANSLATION protein_coding - CCDS23352.1 1 634.0 0.0 2.0 0.0 288.9 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000036867 Smad6 ENSMUST00000179458 ENSMUSP00000137442 TRANSLATION protein_coding - - - 90.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000036867 Smad6 ENSMUST00000041029 ENSMUSP00000036285 TRANSLATION protein_coding - CCDS23273.1 1 495.0 4.0 1.0 7.6 278.0 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036867 Smad6 ENSMUST00000144323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043885 Slc36a4 ENSMUST00000214954 ENSMUSP00000149875 TRANSLATION nonsense_mediated_decay start - 3 140.0 0.0 2.4 0.0 102.0 8.0 -2,-5 0.0049 - -2.0 MINOR ENSMUSG00000043885 Slc36a4 ENSMUST00000115588 ENSMUSP00000111251 TRANSLATION protein_coding - - 1 404.0 0.0 6.47 0.0 217.1 11.0 -4,-5 0.0042 1 8.052 MINOR ENSMUSG00000043885 Slc36a4 ENSMUST00000061568 ENSMUSP00000057355 TRANSLATION protein_coding - CCDS22840.1 1 500.0 0.0 7.07 2.7 262.9 14.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000059623 Or7d9 ENSMUST00000071725 ENSMUSP00000071641 TRANSLATION protein_coding - CCDS22875.2 2 319.0 0.0 1.0 0.0 172.3 6.0 -4,-7 0.3813 - 12.0 MINOR ENSMUSG00000059623 Or7d9 ENSMUST00000212983 ENSMUSP00000148572 TRANSLATION protein_coding - - 2 311.0 0.0 1.0 10.4 172.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032584 Mst1r ENSMUST00000195617 ENSMUSP00000142201 TRANSLATION nonsense_mediated_decay - - 1 442.0 0.0 1.0 0.0 116.7 0.0 3,-2 0.0006 7 -2.0 MINOR ENSMUSG00000032584 Mst1r ENSMUST00000195113 - NO_TRANSLATION retained_intron ENSMUSG00000032584 Mst1r ENSMUST00000194527 - NO_TRANSLATION retained_intron ENSMUSG00000032584 Mst1r ENSMUST00000035203 ENSMUSP00000035203 TRANSLATION protein_coding - CCDS23509.1 1 1378.0 17.0 12.63 0.0 535.6 0.0 3,-2 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000111700 Gm49385 ENSMUST00000215291 ENSMUSP00000149276 TRANSLATION protein_coding_LoF,RT stop - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000036027 Pou2af2 ENSMUST00000039959 ENSMUSP00000036912 TRANSLATION protein_coding - CCDS52792.1 1 235.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0349 - 0.0 MINOR ENSMUSG00000036027 Pou2af2 ENSMUST00000181366 ENSMUSP00000137735 TRANSLATION protein_coding - CCDS52792.1 5 235.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0349 - 0.0 MINOR ENSMUSG00000036027 Pou2af2 ENSMUST00000238450 ENSMUSP00000158857 TRANSLATION protein_coding - - - 287.0 0.0 0.0 10.4 21.5 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000007656 Arpp19 ENSMUST00000170308 ENSMUSP00000132350 TRANSLATION protein_coding - CCDS23340.1 2 112.0 1.0 0.0 30.2 41.7 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000007656 Arpp19 ENSMUST00000168166 ENSMUSP00000126618 TRANSLATION protein_coding - CCDS23340.1 2 112.0 1.0 0.0 30.2 41.7 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000007656 Arpp19 ENSMUST00000169492 ENSMUSP00000128921 TRANSLATION protein_coding - CCDS52859.1 2 145.0 1.0 0.0 0.4 41.7 0.0 -4,-6 0.1229 5 6.0 MINOR ENSMUSG00000007656 Arpp19 ENSMUST00000164467 ENSMUSP00000130730 TRANSLATION nonsense_mediated_decay - CCDS23340.1 3 112.0 1.0 0.0 30.2 41.7 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000007656 Arpp19 ENSMUST00000170310 ENSMUSP00000125825 TRANSLATION protein_coding - - 3 96.0 1.0 0.0 13.0 41.7 0.0 -4,-5 0.501 5 7.644 MINOR ENSMUSG00000007656 Arpp19 ENSMUST00000167885 ENSMUSP00000131597 TRANSLATION protein_coding - - 3 96.0 1.0 0.0 13.0 41.7 0.0 -4,-5 0.501 5 7.644 MINOR ENSMUSG00000007656 Arpp19 ENSMUST00000169448 - NO_TRANSLATION retained_intron ENSMUSG00000007656 Arpp19 ENSMUST00000007800 ENSMUSP00000007800 TRANSLATION protein_coding - CCDS23340.1 1 112.0 1.0 0.0 30.2 41.7 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000007656 Arpp19 ENSMUST00000169188 ENSMUSP00000131922 TRANSLATION protein_coding - - 5 71.0 1.0 0.0 0.0 33.7 0.0 -4,-5 0.0006 3 4.848 MINOR ENSMUSG00000007656 Arpp19 ENSMUST00000168301 ENSMUSP00000132802 TRANSLATION protein_coding - - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000007656 Arpp19 ENSMUST00000166549 ENSMUSP00000131987 TRANSLATION protein_coding - - 1 96.0 1.0 0.0 13.0 41.7 0.0 -4,-5 0.501 5 7.644 MINOR ENSMUSG00000121602 ENSMUSG00000121602 ENSMUST00000249659 ENSMUSP00000159838 TRANSLATION protein_coding - - - 23.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000054360 Bsx ENSMUST00000067375 ENSMUSP00000068057 TRANSLATION protein_coding - CCDS23084.1 1 232.0 0.0 1.6 13.1 76.7 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000079243 Xirp1 ENSMUST00000238557 ENSMUSP00000158836 TRANSLATION protein_coding - - - 1813.0 0.0 0.0 0.0 288.0 0.0 -4,-7 0.2939 41 2.0 ALTERNATIVE:2 ENSMUSG00000079243 Xirp1 ENSMUST00000111635 ENSMUSP00000107262 TRANSLATION protein_coding - CCDS52966.1 1 1132.0 0.0 0.0 1.1 288.0 0.0 -4,-7 1.0 29 3.0 PRINCIPAL:2 ENSMUSG00000079243 Xirp1 ENSMUST00000213113 ENSMUSP00000149083 TRANSLATION protein_coding start - 5 77.0 0.0 0.0 0.0 22.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031963 Bmper ENSMUST00000214050 ENSMUSP00000149700 TRANSLATION protein_coding start/stop - 5 213.0 0.0 0.48 0.0 74.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031963 Bmper ENSMUST00000071982 ENSMUSP00000071872 TRANSLATION protein_coding - CCDS22929.1 1 685.0 0.0 3.73 14.0 296.1 0.0 -2,-4 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000031963 Bmper ENSMUST00000217648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032186 Tmod2 ENSMUST00000098552 ENSMUSP00000096152 TRANSLATION protein_coding - CCDS23345.1 1 351.0 0.0 4.6565 30.9 199.9 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000032186 Tmod2 ENSMUST00000215614 ENSMUSP00000150413 TRANSLATION protein_coding - CCDS23345.1 1 351.0 0.0 4.6565 30.9 199.9 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000032186 Tmod2 ENSMUST00000064433 ENSMUSP00000069956 TRANSLATION protein_coding - CCDS23345.1 1 351.0 0.0 4.6565 30.9 199.9 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000032186 Tmod2 ENSMUST00000217233 ENSMUSP00000150170 TRANSLATION protein_coding stop - 3 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032186 Tmod2 ENSMUST00000214581 - NO_TRANSLATION retained_intron ENSMUSG00000032186 Tmod2 ENSMUST00000213565 ENSMUSP00000149584 TRANSLATION protein_coding stop - 3 131.0 0.0 0.33 0.0 172.8 0.0 -4,-5 0.0047 4 -2.0 MINOR ENSMUSG00000032186 Tmod2 ENSMUST00000215036 ENSMUSP00000150750 TRANSLATION protein_coding - CCDS23345.1 1 351.0 0.0 4.6565 30.9 199.9 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000032186 Tmod2 ENSMUST00000215462 ENSMUSP00000150645 TRANSLATION protein_coding - - 1 248.0 0.0 2.3925 0.0 199.9 0.0 -4,-5 0.0041 8 7.47 MINOR ENSMUSG00000032186 Tmod2 ENSMUST00000164100 ENSMUSP00000126739 TRANSLATION protein_coding - CCDS23345.1 1 351.0 0.0 4.6565 30.9 199.9 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000098332 Pigbos1 ENSMUST00000184319 - NO_TRANSLATION retained_intron ENSMUSG00000098332 Pigbos1 ENSMUST00000184126 ENSMUSP00000159173 TRANSLATION protein_coding - - 1 57.0 0.0 1.0 2.0 0.0 0.0 0,-3 0.8672 - 7.0 PRINCIPAL:1 ENSMUSG00000005800 Mmp8 ENSMUST00000018765 ENSMUSP00000018765 TRANSLATION protein_coding - CCDS22808.1 1 465.0 29.0 8.04 4.9 399.3 0.0 4,-1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000034487 Poglut3 ENSMUST00000214164 ENSMUSP00000149383 TRANSLATION protein_coding start - 3 120.0 0.0 2.0 0.0 74.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000034487 Poglut3 ENSMUST00000037853 ENSMUSP00000039313 TRANSLATION protein_coding - CCDS23182.1 1 503.0 0.0 9.25 0.0 316.7 0.0 2,-2 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000032332 Col12a1 ENSMUST00000150289 - NO_TRANSLATION retained_intron ENSMUSG00000032332 Col12a1 ENSMUST00000122827 - NO_TRANSLATION retained_intron ENSMUSG00000032332 Col12a1 ENSMUST00000141667 - NO_TRANSLATION retained_intron ENSMUSG00000032332 Col12a1 ENSMUST00000135009 ENSMUSP00000123455 TRANSLATION protein_coding start - 5 314.0 0.0 1.5475 0.0 68.0 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000032332 Col12a1 ENSMUST00000121227 ENSMUSP00000112604 TRANSLATION protein_coding - - 5 3064.0 21.0 25.755 4.0 1666.2 0.0 4,-1 0.4815 95 18.752 MINOR ENSMUSG00000032332 Col12a1 ENSMUST00000071750 ENSMUSP00000071662 TRANSLATION protein_coding - CCDS72284.1 5 3065.0 21.0 25.755 13.9 1669.2 0.0 4,-1 1.0 95 22.0 PRINCIPAL:1 ENSMUSG00000000088 Cox5a ENSMUST00000213678 - NO_TRANSLATION retained_intron ENSMUSG00000000088 Cox5a ENSMUST00000214154 - NO_TRANSLATION retained_intron ENSMUSG00000000088 Cox5a ENSMUST00000000090 ENSMUSP00000000090 TRANSLATION protein_coding - CCDS23223.1 1 146.0 0.0 3.0 22.7 159.4 0.0 -3,1 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000040722 Scamp5 ENSMUST00000213771 ENSMUSP00000149622 TRANSLATION nonsense_mediated_decay - - 3 69.0 0.0 1.15 0.0 52.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040722 Scamp5 ENSMUST00000215734 ENSMUSP00000151197 TRANSLATION nonsense_mediated_decay - - 3 45.0 0.0 1.0 0.0 50.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040722 Scamp5 ENSMUST00000215208 - NO_TRANSLATION retained_intron ENSMUSG00000040722 Scamp5 ENSMUST00000215059 ENSMUSP00000150248 TRANSLATION protein_coding stop - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040722 Scamp5 ENSMUST00000214256 ENSMUSP00000150867 TRANSLATION protein_coding - CCDS40649.1 1 235.0 0.0 5.0 34.2 233.2 4.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000040722 Scamp5 ENSMUST00000046587 ENSMUSP00000035898 TRANSLATION protein_coding - CCDS40649.1 1 235.0 0.0 5.0 34.2 233.2 4.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000044205 Or8b57 ENSMUST00000213087 ENSMUSP00000148541 TRANSLATION protein_coding - - 2 311.0 0.0 1.0 9.4 163.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044205 Or8b57 ENSMUST00000050996 ENSMUSP00000083206 TRANSLATION protein_coding - CCDS23074.1 2 315.0 0.0 1.0 4.4 163.7 6.0 -4,-6 0.9159 - 13.215 MINOR ENSMUSG00000032083 Apoa1 ENSMUST00000132155 ENSMUSP00000150525 TRANSLATION protein_coding stop - 1 122.0 0.0 2.0 0.0 0.0 0.0 4,-1 0.0013 6 -2.0 MINOR ENSMUSG00000032083 Apoa1 ENSMUST00000034588 ENSMUSP00000034588 TRANSLATION protein_coding - CCDS40610.1 1 264.0 0.0 3.0 9.9 170.4 0.0 4,-1 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000032372 Plscr2 ENSMUST00000156772 - NO_TRANSLATION retained_intron ENSMUSG00000032372 Plscr2 ENSMUST00000034932 ENSMUSP00000034932 TRANSLATION protein_coding - CCDS23405.1 1 307.0 0.0 0.0 0.1 303.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000032372 Plscr2 ENSMUST00000113044 ENSMUSP00000108667 TRANSLATION protein_coding - - 3 172.0 0.0 0.0 0.0 229.4 0.0 -4,-5 0.0 - 1.566 MINOR ENSMUSG00000032372 Plscr2 ENSMUST00000126911 ENSMUSP00000119104 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032372 Plscr2 ENSMUST00000180154 ENSMUSP00000136481 TRANSLATION protein_coding - CCDS23405.1 1 307.0 0.0 0.0 0.1 303.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000111709 Gm3776 ENSMUST00000217203 ENSMUSP00000150224 TRANSLATION protein_coding - - 1 223.0 10.0 5.25 19.0 140.9 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000001366 Fbxo9 ENSMUST00000159099 ENSMUSP00000125381 TRANSLATION protein_coding - - 1 194.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000001366 Fbxo9 ENSMUST00000085311 ENSMUSP00000082419 TRANSLATION protein_coding - CCDS52863.1 1 436.0 0.0 0.0 18.0 37.5 0.0 -4,-5 1.0 7 6.0 PRINCIPAL:4 ENSMUSG00000001366 Fbxo9 ENSMUST00000162451 - NO_TRANSLATION retained_intron ENSMUSG00000001366 Fbxo9 ENSMUST00000159453 - NO_TRANSLATION retained_intron ENSMUSG00000001366 Fbxo9 ENSMUST00000162310 - NO_TRANSLATION retained_intron ENSMUSG00000001366 Fbxo9 ENSMUST00000001402 ENSMUSP00000001402 TRANSLATION protein_coding - CCDS52864.1 1 437.0 0.0 0.0 18.0 37.5 0.0 -4,-5 0.9976 7 6.0 ALTERNATIVE:1 ENSMUSG00000001366 Fbxo9 ENSMUST00000162625 ENSMUSP00000123807 TRANSLATION protein_coding stop - 5 68.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000038379 Ttk ENSMUST00000185913 ENSMUSP00000139956 TRANSLATION protein_coding - CCDS81044.1 1 773.0 3.0 8.9 0.0 134.2 0.0 -4,-5 0.0591 8 7.344 MINOR ENSMUSG00000038379 Ttk ENSMUST00000186277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038379 Ttk ENSMUST00000070326 ENSMUSP00000064839 TRANSLATION protein_coding - CCDS52874.1 1 830.0 3.0 10.1475 0.1 220.2 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000038379 Ttk ENSMUST00000189727 - NO_TRANSLATION retained_intron ENSMUSG00000038379 Ttk ENSMUST00000191484 ENSMUSP00000139900 TRANSLATION protein_coding stop - 5 156.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038379 Ttk ENSMUST00000188445 - NO_TRANSLATION retained_intron ENSMUSG00000048758 Rpl29 ENSMUST00000150576 ENSMUSP00000117834 TRANSLATION protein_coding - CCDS23476.1 1 160.0 0.0 3.25 5.0 97.1 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000048758 Rpl29 ENSMUST00000213448 ENSMUSP00000149722 TRANSLATION protein_coding stop - 2 140.0 0.0 3.25 0.0 97.1 0.0 -4,-6 0.0084 - -2.0 MINOR ENSMUSG00000048758 Rpl29 ENSMUST00000217081 ENSMUSP00000150339 TRANSLATION protein_coding stop - 2 68.0 0.0 2.25 3.0 97.1 0.0 -4,-6 0.5033 - -2.0 MINOR ENSMUSG00000048758 Rpl29 ENSMUST00000059802 ENSMUSP00000080203 TRANSLATION protein_coding - CCDS23476.1 1 160.0 0.0 3.25 5.0 97.1 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000048758 Rpl29 ENSMUST00000214067 ENSMUSP00000150846 TRANSLATION protein_coding start - 5 94.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048758 Rpl29 ENSMUST00000098994 ENSMUSP00000096592 TRANSLATION protein_coding - CCDS23476.1 2 160.0 0.0 3.25 5.0 97.1 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000039016 Timm8b ENSMUST00000044051 ENSMUSP00000039335 TRANSLATION protein_coding - CCDS40624.1 1 83.0 0.0 1.75 5.7 78.4 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000031965 Tbx20 ENSMUST00000052946 ENSMUSP00000052591 TRANSLATION protein_coding - CCDS22933.1 1 445.0 0.0 4.48 28.3 275.7 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031965 Tbx20 ENSMUST00000216564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031965 Tbx20 ENSMUST00000166018 ENSMUSP00000126318 TRANSLATION protein_coding - CCDS52744.1 1 297.0 0.0 4.48 2.1 275.7 0.0 -4,-7 0.4034 - 12.16 MINOR ENSMUSG00000031965 Tbx20 ENSMUST00000215802 ENSMUSP00000149186 TRANSLATION protein_coding start - 5 130.0 0.0 2.88 0.0 157.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031965 Tbx20 ENSMUST00000217597 - NO_TRANSLATION retained_intron ENSMUSG00000032290 Ptpn9 ENSMUST00000034832 ENSMUSP00000034832 TRANSLATION protein_coding - CCDS23215.1 1 593.0 11.0 7.575 5.3 387.4 0.0 -4,-5 1.0 21 20.0 PRINCIPAL:1 ENSMUSG00000032290 Ptpn9 ENSMUST00000213500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032290 Ptpn9 ENSMUST00000216034 ENSMUSP00000150426 TRANSLATION protein_coding start/stop - 3 144.0 0.0 0.525 0.0 42.3 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032290 Ptpn9 ENSMUST00000215707 - NO_TRANSLATION retained_intron ENSMUSG00000079083 Jrkl ENSMUST00000110582 ENSMUSP00000128798 TRANSLATION protein_coding - CCDS57650.1 - 523.0 0.0 0.0 9.2 304.5 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000010047 Hyal2 ENSMUST00000010191 ENSMUSP00000010191 TRANSLATION protein_coding - CCDS23496.1 1 473.0 0.0 5.0 8.8 456.9 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000010047 Hyal2 ENSMUST00000195681 ENSMUSP00000141820 TRANSLATION protein_coding - - - 333.0 0.0 3.15 0.0 381.2 0.0 4,-1 0.0018 1 3.756 MINOR ENSMUSG00000010047 Hyal2 ENSMUST00000194794 ENSMUSP00000142019 TRANSLATION protein_coding stop - 3 154.0 0.0 2.0 0.0 167.3 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000010047 Hyal2 ENSMUST00000195667 - NO_TRANSLATION retained_intron ENSMUSG00000010047 Hyal2 ENSMUST00000192887 ENSMUSP00000142207 TRANSLATION protein_coding stop - 3 81.0 0.0 1.0 0.0 52.5 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000010047 Hyal2 ENSMUST00000195752 ENSMUSP00000141280 TRANSLATION protein_coding - CCDS23496.1 5 473.0 0.0 5.0 8.8 456.9 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000010047 Hyal2 ENSMUST00000193747 ENSMUSP00000142141 TRANSLATION protein_coding - - 1 347.0 0.0 4.198 0.0 424.5 0.0 4,-1 0.0071 1 8.454 MINOR ENSMUSG00000025794 Rpl14 ENSMUST00000216990 ENSMUSP00000150756 TRANSLATION nonsense_mediated_decay start - 3 63.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000025794 Rpl14 ENSMUST00000213310 - NO_TRANSLATION retained_intron ENSMUSG00000025794 Rpl14 ENSMUST00000215063 - NO_TRANSLATION retained_intron ENSMUSG00000025794 Rpl14 ENSMUST00000165532 ENSMUSP00000131489 TRANSLATION protein_coding - CCDS40809.1 1 217.0 0.0 3.65 6.2 111.1 0.0 -4,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000025794 Rpl14 ENSMUST00000216628 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015357 Clpx ENSMUST00000148632 - NO_TRANSLATION retained_intron ENSMUSG00000015357 Clpx ENSMUST00000015501 ENSMUSP00000015501 TRANSLATION protein_coding - CCDS23288.1 1 634.0 10.0 4.97 7.2 193.6 0.0 -2,0 1.0 19 16.0 ALTERNATIVE:1 ENSMUSG00000015357 Clpx ENSMUST00000147279 ENSMUSP00000116377 TRANSLATION protein_coding start/stop - 2 192.0 8.0 2.25 0.0 71.7 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000015357 Clpx ENSMUST00000113824 ENSMUSP00000109455 TRANSLATION protein_coding - CCDS40669.1 1 620.0 10.0 4.77 5.8 193.6 0.0 -2,0 0.916 20 15.146 PRINCIPAL:3 ENSMUSG00000038708 Golga4 ENSMUST00000211838 - NO_TRANSLATION retained_intron ENSMUSG00000038708 Golga4 ENSMUST00000212274 ENSMUSP00000148370 TRANSLATION nonsense_mediated_decay start - 5 131.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038708 Golga4 ENSMUST00000212151 - NO_TRANSLATION retained_intron ENSMUSG00000038708 Golga4 ENSMUST00000084820 ENSMUSP00000081880 TRANSLATION protein_coding - CCDS40801.1 1 2238.0 0.0 4.28 0.3 35.7 0.0 -4,-6 1.0 76 12.0 PRINCIPAL:1 ENSMUSG00000038708 Golga4 ENSMUST00000212461 ENSMUSP00000148311 TRANSLATION protein_coding start/stop - 5 454.0 0.0 2.2 0.0 0.0 0.0 -4,-2 0.0 13 -2.0 MINOR ENSMUSG00000038708 Golga4 ENSMUST00000212183 ENSMUSP00000148593 TRANSLATION nonsense_mediated_decay start - 5 111.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038708 Golga4 ENSMUST00000211840 ENSMUSP00000148518 TRANSLATION protein_coding start - 1 1251.0 0.0 1.75 0.0 35.7 0.0 -4,-5 0.2061 42 -2.0 MINOR ENSMUSG00000038708 Golga4 ENSMUST00000212097 ENSMUSP00000148748 TRANSLATION protein_coding stop - 1 941.0 0.0 2.2 0.0 0.0 0.0 -4,-6 0.0112 34 -2.0 MINOR ENSMUSG00000038708 Golga4 ENSMUST00000212620 - NO_TRANSLATION retained_intron ENSMUSG00000038708 Golga4 ENSMUST00000212593 - NO_TRANSLATION retained_intron ENSMUSG00000038708 Golga4 ENSMUST00000211846 ENSMUSP00000148276 TRANSLATION nonsense_mediated_decay start - 3 118.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000038708 Golga4 ENSMUST00000211826 - NO_TRANSLATION retained_intron ENSMUSG00000038708 Golga4 ENSMUST00000212913 - NO_TRANSLATION retained_intron ENSMUSG00000066456 Hmgn3 ENSMUST00000161796 ENSMUSP00000125616 TRANSLATION protein_coding - CCDS52873.1 1 77.0 0.0 0.0 10.4 69.6 0.0 -4,-5 0.7358 - 7.581 MINOR ENSMUSG00000066456 Hmgn3 ENSMUST00000187193 ENSMUSP00000140980 TRANSLATION protein_coding - - 5 128.0 0.0 0.0 3.0 86.2 0.0 -4,-5 0.1711 1 6.582 MINOR ENSMUSG00000066456 Hmgn3 ENSMUST00000162246 ENSMUSP00000124278 TRANSLATION protein_coding - CCDS52872.1 1 99.0 0.0 0.0 11.3 85.5 0.0 -4,-5 1.0 - 8.952 PRINCIPAL:1 ENSMUSG00000066456 Hmgn3 ENSMUST00000189777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066456 Hmgn3 ENSMUST00000185315 ENSMUSP00000140356 TRANSLATION protein_coding - - 2 95.0 0.0 0.0 1.1 84.3 0.0 -4,-5 0.0991 1 5.898 MINOR ENSMUSG00000066456 Hmgn3 ENSMUST00000185359 - NO_TRANSLATION retained_intron ENSMUSG00000066456 Hmgn3 ENSMUST00000190154 ENSMUSP00000140247 TRANSLATION nonsense_mediated_decay - - 5 95.0 0.0 0.0 1.1 84.3 0.0 -4,-5 0.0991 - -2.0 MINOR ENSMUSG00000066456 Hmgn3 ENSMUST00000191105 - NO_TRANSLATION retained_intron ENSMUSG00000066456 Hmgn3 ENSMUST00000190580 - NO_TRANSLATION retained_intron ENSMUSG00000094678 Or7e166 ENSMUST00000217450 ENSMUSP00000150889 TRANSLATION protein_coding - - 3 309.0 0.0 1.0 2.3 166.6 4.0 -3,-5 0.5249 - 12.42 MINOR ENSMUSG00000094678 Or7e166 ENSMUST00000212013 ENSMUSP00000148617 TRANSLATION protein_coding - CCDS52731.1 3 309.0 0.0 1.0 7.2 166.6 4.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094678 Or7e166 ENSMUST00000077023 ENSMUSP00000076281 TRANSLATION protein_coding - CCDS52731.1 - 309.0 0.0 1.0 7.2 166.6 4.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032042 Srpr ENSMUST00000154005 - NO_TRANSLATION retained_intron ENSMUSG00000032042 Srpr ENSMUST00000132799 ENSMUSP00000115104 TRANSLATION protein_coding start - 3 153.0 1.0 3.3 0.0 71.1 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000032042 Srpr ENSMUST00000138287 ENSMUSP00000149923 TRANSLATION protein_coding stop - 3 144.0 0.0 0.0 0.0 54.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032042 Srpr ENSMUST00000034541 ENSMUSP00000034541 TRANSLATION protein_coding - CCDS22959.1 1 636.0 9.0 10.0 12.5 415.0 0.0 -4,-5 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000066357 Wdr6 ENSMUST00000068700 ENSMUSP00000070927 TRANSLATION protein_coding - CCDS23532.2 1 1125.0 0.0 0.5 4.3 51.3 0.0 -4,-7 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000058659 Or7e165 ENSMUST00000215112 ENSMUSP00000150309 TRANSLATION protein_coding - CCDS22863.1 2 309.0 0.0 3.0 8.3 174.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058659 Or7e165 ENSMUST00000212363 ENSMUSP00000148538 TRANSLATION protein_coding stop - 3 48.0 0.0 1.0 0.0 38.8 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000009741 Ubp1 ENSMUST00000216558 ENSMUSP00000150023 TRANSLATION protein_coding - CCDS40788.1 1 540.0 0.0 1.73 22.9 198.2 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000009741 Ubp1 ENSMUST00000009885 ENSMUSP00000009885 TRANSLATION protein_coding - CCDS40789.1 5 504.0 0.0 1.73 16.3 198.2 0.0 -4,-5 0.9302 10 14.796 MINOR ENSMUSG00000009741 Ubp1 ENSMUST00000214095 ENSMUSP00000149908 TRANSLATION protein_coding - CCDS40789.1 1 504.0 0.0 1.73 16.3 198.2 0.0 -4,-5 0.9302 10 14.796 MINOR ENSMUSG00000009741 Ubp1 ENSMUST00000216293 - NO_TRANSLATION retained_intron ENSMUSG00000009741 Ubp1 ENSMUST00000216891 - NO_TRANSLATION retained_intron ENSMUSG00000009741 Ubp1 ENSMUST00000084885 ENSMUSP00000081946 TRANSLATION protein_coding - CCDS40788.1 5 540.0 0.0 1.73 22.9 198.2 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000033577 Myo6 ENSMUST00000139981 - NO_TRANSLATION retained_intron ENSMUSG00000033577 Myo6 ENSMUST00000156199 - NO_TRANSLATION retained_intron ENSMUSG00000033577 Myo6 ENSMUST00000113266 ENSMUSP00000108891 TRANSLATION protein_coding - - 5 1253.0 17.0 27.9 25.5 945.4 0.0 -4,-5 0.8536 49 16.122 ALTERNATIVE:1 ENSMUSG00000033577 Myo6 ENSMUST00000113268 ENSMUSP00000108893 TRANSLATION protein_coding - - 5 1284.0 17.0 28.5089 13.3 945.4 0.0 -4,-5 0.8055 50 15.348 ALTERNATIVE:1 ENSMUSG00000033577 Myo6 ENSMUST00000184480 ENSMUSP00000139019 TRANSLATION protein_coding - - 5 1294.0 17.0 28.8389 13.2 945.4 0.0 -4,-5 0.8002 51 15.992 PRINCIPAL:3 ENSMUSG00000033577 Myo6 ENSMUST00000183377 - NO_TRANSLATION retained_intron ENSMUSG00000033577 Myo6 ENSMUST00000127779 ENSMUSP00000139228 TRANSLATION protein_coding - - 5 1285.0 17.0 28.73 17.2 945.4 0.0 -4,-5 0.8704 50 16.428 ALTERNATIVE:1 ENSMUSG00000033577 Myo6 ENSMUST00000035889 ENSMUSP00000036181 TRANSLATION protein_coding - CCDS23368.1 5 1262.0 17.0 27.9 22.0 945.4 0.0 -4,-5 1.0 49 15.55 ALTERNATIVE:1 ENSMUSG00000033577 Myo6 ENSMUST00000076140 ENSMUSP00000075501 TRANSLATION protein_coding - - 5 1266.0 17.0 28.4 1.5 945.4 0.0 -4,-5 0.3562 49 13.204 MINOR ENSMUSG00000033577 Myo6 ENSMUST00000138650 - NO_TRANSLATION retained_intron ENSMUSG00000033577 Myo6 ENSMUST00000130496 - NO_TRANSLATION retained_intron ENSMUSG00000033577 Myo6 ENSMUST00000143804 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079355 Ackr4 ENSMUST00000219146 ENSMUSP00000152036 TRANSLATION protein_coding - CCDS23459.1 5 350.0 0.0 0.6 13.5 168.2 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000079355 Ackr4 ENSMUST00000076147 ENSMUSP00000075507 TRANSLATION protein_coding - CCDS23459.1 1 350.0 0.0 0.6 13.5 168.2 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000079355 Ackr4 ENSMUST00000050139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079355 Ackr4 ENSMUST00000188000 ENSMUSP00000140792 TRANSLATION protein_coding - CCDS23459.1 1 350.0 0.0 0.6 13.5 168.2 5.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032127 Vps11 ENSMUST00000214460 ENSMUSP00000150989 TRANSLATION protein_coding start/stop - 3 249.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000032127 Vps11 ENSMUST00000216089 - NO_TRANSLATION retained_intron ENSMUSG00000032127 Vps11 ENSMUST00000214510 ENSMUSP00000149457 TRANSLATION nonsense_mediated_decay - - 1 407.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0019 8 -2.0 MINOR ENSMUSG00000032127 Vps11 ENSMUST00000213740 ENSMUSP00000148911 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032127 Vps11 ENSMUST00000034644 ENSMUSP00000034644 TRANSLATION protein_coding - CCDS40599.1 1 941.0 8.0 0.25 12.5 147.8 0.0 -4,-5 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000032127 Vps11 ENSMUST00000213249 ENSMUSP00000150333 TRANSLATION nonsense_mediated_decay start - 2 120.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000032477 Cdc25a ENSMUST00000199353 - NO_TRANSLATION retained_intron ENSMUSG00000032477 Cdc25a ENSMUST00000197945 - NO_TRANSLATION retained_intron ENSMUSG00000032477 Cdc25a ENSMUST00000198308 ENSMUSP00000142958 TRANSLATION protein_coding - - 1 411.0 0.0 4.25 0.0 269.4 0.0 -4,-6 0.0204 - 9.6 MINOR ENSMUSG00000032477 Cdc25a ENSMUST00000199787 ENSMUSP00000142752 TRANSLATION protein_coding start - 5 235.0 0.0 3.25 0.0 114.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032477 Cdc25a ENSMUST00000198219 - NO_TRANSLATION retained_intron ENSMUSG00000032477 Cdc25a ENSMUST00000198848 ENSMUSP00000142819 TRANSLATION nonsense_mediated_decay - - 3 86.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000032477 Cdc25a ENSMUST00000094324 ENSMUSP00000091882 TRANSLATION protein_coding - CCDS23559.1 1 514.0 0.0 5.45 0.0 269.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032596 Uba7 ENSMUST00000177096 - NO_TRANSLATION retained_intron ENSMUSG00000032596 Uba7 ENSMUST00000176743 - NO_TRANSLATION retained_intron ENSMUSG00000032596 Uba7 ENSMUST00000176673 - NO_TRANSLATION retained_intron ENSMUSG00000032596 Uba7 ENSMUST00000175933 - NO_TRANSLATION retained_intron ENSMUSG00000032596 Uba7 ENSMUST00000176478 - NO_TRANSLATION retained_intron ENSMUSG00000032596 Uba7 ENSMUST00000035216 ENSMUSP00000035216 TRANSLATION protein_coding - CCDS40764.1 1 977.0 18.0 16.9 0.0 718.5 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000032596 Uba7 ENSMUST00000177071 - NO_TRANSLATION retained_intron ENSMUSG00000032596 Uba7 ENSMUST00000177039 ENSMUSP00000135584 TRANSLATION nonsense_mediated_decay start - 5 102.0 0.0 1.82 0.0 33.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032596 Uba7 ENSMUST00000176842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032596 Uba7 ENSMUST00000176340 - NO_TRANSLATION retained_intron ENSMUSG00000032596 Uba7 ENSMUST00000176858 - NO_TRANSLATION retained_intron ENSMUSG00000032596 Uba7 ENSMUST00000075082 - NO_TRANSLATION retained_intron ENSMUSG00000032596 Uba7 ENSMUST00000176037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032596 Uba7 ENSMUST00000177494 - NO_TRANSLATION retained_intron ENSMUSG00000032596 Uba7 ENSMUST00000177392 ENSMUSP00000134910 TRANSLATION nonsense_mediated_decay - - 1 410.0 0.0 7.97 0.0 265.5 0.0 -4,-5 0.0006 2 -2.0 MINOR ENSMUSG00000033054 Npat ENSMUST00000148336 - NO_TRANSLATION retained_intron ENSMUSG00000033054 Npat ENSMUST00000035850 ENSMUSP00000048709 TRANSLATION protein_coding - CCDS40637.1 1 1420.0 0.0 0.0 0.1 1055.3 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000031993 Snx19 ENSMUST00000216552 - NO_TRANSLATION retained_intron ENSMUSG00000031993 Snx19 ENSMUST00000164099 ENSMUSP00000131895 TRANSLATION protein_coding - CCDS22944.1 1 997.0 0.0 1.08 6.0 270.8 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000031993 Snx19 ENSMUST00000216545 ENSMUSP00000149310 TRANSLATION protein_coding start - 3 214.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000091129 Iqcf6 ENSMUST00000238329 ENSMUSP00000158588 TRANSLATION protein_coding - - - 146.0 0.0 1.0 3.7 48.1 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000091129 Iqcf6 ENSMUST00000171091 ENSMUSP00000131823 TRANSLATION protein_coding - CCDS52913.1 5 157.0 0.0 1.0 2.1 48.1 0.0 -4,-5 0.7459 - 8.407 ALTERNATIVE:2 ENSMUSG00000007892 Rplp1 ENSMUST00000008036 ENSMUSP00000008036 TRANSLATION protein_coding - CCDS23260.1 1 114.0 0.0 2.5 36.9 92.3 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000032291 Crabp1 ENSMUST00000034830 ENSMUSP00000034830 TRANSLATION protein_coding - CCDS23195.1 1 137.0 18.0 3.25 36.9 83.6 0.0 -4,-6 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000074305 Peak1 ENSMUST00000186735 ENSMUSP00000140080 TRANSLATION protein_coding stop - 3 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074305 Peak1 ENSMUST00000185775 - NO_TRANSLATION retained_intron ENSMUSG00000074305 Peak1 ENSMUST00000188142 ENSMUSP00000139985 TRANSLATION protein_coding - - 1 705.0 0.0 0.5 0.0 45.0 0.0 -4,-5 0.8317 15 6.0 ALTERNATIVE:2 ENSMUSG00000074305 Peak1 ENSMUST00000061552 ENSMUSP00000109901 TRANSLATION protein_coding - CCDS52804.1 1 1735.0 0.0 0.5 0.4 45.0 0.0 -4,-5 0.919 36 6.0 PRINCIPAL:3 ENSMUSG00000059821 Or7g29 ENSMUST00000216839 ENSMUSP00000151112 TRANSLATION protein_coding - CCDS22856.1 3 312.0 0.0 1.0 8.4 190.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059821 Or7g29 ENSMUST00000079620 ENSMUSP00000078568 TRANSLATION protein_coding - CCDS22856.1 - 312.0 0.0 1.0 8.4 190.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031966 Glb1l3 ENSMUST00000211353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031966 Glb1l3 ENSMUST00000210274 ENSMUSP00000147979 TRANSLATION protein_coding - CCDS85650.1 1 662.0 12.0 17.0 0.0 369.1 0.0 -1,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000031966 Glb1l3 ENSMUST00000034448 ENSMUSP00000034448 TRANSLATION protein_coding - - 5 587.0 12.0 16.0 0.0 360.5 0.0 -4,-7 0.0311 2 15.486 MINOR ENSMUSG00000031966 Glb1l3 ENSMUST00000209592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034275 Igsf9b ENSMUST00000214357 ENSMUSP00000149356 TRANSLATION protein_coding - - 5 1441.0 0.0 8.28 12.5 242.6 0.0 1,-3 1.0 17 14.916 PRINCIPAL:1 ENSMUSG00000034275 Igsf9b ENSMUST00000115247 ENSMUSP00000110902 TRANSLATION protein_coding - - 1 722.0 0.0 8.28 0.0 244.0 0.0 1,-3 0.1589 13 12.0 MINOR ENSMUSG00000034275 Igsf9b ENSMUST00000214187 - NO_TRANSLATION retained_intron ENSMUSG00000066705 Fxyd6 ENSMUST00000085939 ENSMUSP00000083101 TRANSLATION protein_coding - CCDS23133.1 1 94.0 0.0 1.816 19.7 94.1 1.0 2,-2 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000066705 Fxyd6 ENSMUST00000215281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066705 Fxyd6 ENSMUST00000217381 ENSMUSP00000150813 TRANSLATION protein_coding - - 1 93.0 0.0 1.816 17.7 94.1 1.0 1,-3 0.8339 2 11.572 ALTERNATIVE:1 ENSMUSG00000111409 Gm49380 ENSMUST00000185479 ENSMUSP00000140405 TRANSLATION protein_coding - CCDS23096.1 1 424.0 8.0 0.0 7.8 48.5 2.0 -1,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000111409 Gm49380 ENSMUST00000162126 ENSMUSP00000123938 TRANSLATION nonsense_mediated_decay,RT - CCDS23096.1 1 424.0 8.0 0.0 7.8 48.5 2.0 -1,-5 1.0 - -2.0 MINOR ENSMUSG00000037674 Rfx7 ENSMUST00000183372 ENSMUSP00000139195 TRANSLATION protein_coding - - 1 291.0 0.0 2.455 0.0 107.2 0.0 -4,-5 0.0267 2 12.0 MINOR ENSMUSG00000037674 Rfx7 ENSMUST00000185177 - NO_TRANSLATION retained_intron ENSMUSG00000037674 Rfx7 ENSMUST00000163401 ENSMUSP00000127192 TRANSLATION protein_coding - CCDS40686.1 2 1459.0 0.0 2.455 7.3 107.2 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000037674 Rfx7 ENSMUST00000183601 - NO_TRANSLATION retained_intron ENSMUSG00000037674 Rfx7 ENSMUST00000184851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037674 Rfx7 ENSMUST00000184015 ENSMUSP00000138957 TRANSLATION protein_coding - - 5 291.0 0.0 2.455 0.0 107.2 0.0 -4,-5 0.0267 2 12.0 MINOR ENSMUSG00000109564 Muc16 ENSMUST00000034653 ENSMUSP00000034653 TRANSLATION protein_coding - - 2 258.0 0.0 2.75 0.0 96.8 0.0 -4,-7 0.0 2 0.0 MINOR ENSMUSG00000109564 Muc16 ENSMUST00000208663 ENSMUSP00000147104 TRANSLATION protein_coding - - 5 8478.0 0.0 7.13 0.0 1122.0 0.0 -1,-4 0.629 3 1.298 PRINCIPAL:1 ENSMUSG00000109564 Muc16 ENSMUST00000207509 ENSMUSP00000146740 TRANSLATION protein_coding start/stop - 5 366.0 0.0 4.28 0.0 210.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000109564 Muc16 ENSMUST00000207857 ENSMUSP00000146623 TRANSLATION protein_coding start - 5 2566.0 0.0 9.88 0.0 1282.9 0.0 -4,-6 0.6079 4 -2.0 MINOR ENSMUSG00000025237 Parp6 ENSMUST00000215381 - NO_TRANSLATION retained_intron ENSMUSG00000025237 Parp6 ENSMUST00000050483 ENSMUSP00000063065 TRANSLATION protein_coding - - 1 610.0 0.0 6.62 10.6 47.7 0.0 -4,-5 0.9235 - 9.0 ALTERNATIVE:1 ENSMUSG00000025237 Parp6 ENSMUST00000216351 ENSMUSP00000148866 TRANSLATION nonsense_mediated_decay - - 1 498.0 0.0 4.625 3.0 0.0 0.0 -4,-5 0.0643 - -2.0 MINOR ENSMUSG00000025237 Parp6 ENSMUST00000216482 - NO_TRANSLATION retained_intron ENSMUSG00000025237 Parp6 ENSMUST00000167091 ENSMUSP00000129456 TRANSLATION nonsense_mediated_decay - - 1 485.0 0.0 4.9 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025237 Parp6 ENSMUST00000214984 - NO_TRANSLATION retained_intron ENSMUSG00000025237 Parp6 ENSMUST00000213419 - NO_TRANSLATION retained_intron ENSMUSG00000025237 Parp6 ENSMUST00000214956 ENSMUSP00000150849 TRANSLATION protein_coding start - 3 134.0 0.0 2.125 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000025237 Parp6 ENSMUST00000217284 - NO_TRANSLATION retained_intron ENSMUSG00000025237 Parp6 ENSMUST00000216385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025237 Parp6 ENSMUST00000217195 - NO_TRANSLATION retained_intron ENSMUSG00000025237 Parp6 ENSMUST00000026267 ENSMUSP00000026267 TRANSLATION protein_coding - CCDS57680.1 5 630.0 0.0 6.62 8.5 47.7 0.0 -4,-5 1.0 - 8.343 PRINCIPAL:4 ENSMUSG00000032413 Rasa2 ENSMUST00000034984 ENSMUSP00000034984 TRANSLATION protein_coding - CCDS23416.1 1 847.0 16.0 8.0375 0.0 322.8 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000032413 Rasa2 ENSMUST00000190537 - NO_TRANSLATION retained_intron ENSMUSG00000032413 Rasa2 ENSMUST00000188853 - NO_TRANSLATION retained_intron ENSMUSG00000032413 Rasa2 ENSMUST00000128346 ENSMUSP00000115629 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032413 Rasa2 ENSMUST00000185435 - NO_TRANSLATION retained_intron ENSMUSG00000032413 Rasa2 ENSMUST00000144376 - NO_TRANSLATION retained_intron ENSMUSG00000032023 Jhy ENSMUST00000034521 ENSMUSP00000034521 TRANSLATION protein_coding - CCDS40592.1 5 770.0 0.0 0.0 2.2 117.2 0.0 -4,-2 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000032023 Jhy ENSMUST00000162122 - NO_TRANSLATION retained_intron ENSMUSG00000032023 Jhy ENSMUST00000160120 ENSMUSP00000124975 TRANSLATION protein_coding stop - 2 108.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000049010 Or10s1 ENSMUST00000054051 ENSMUSP00000052705 TRANSLATION protein_coding - CCDS23073.1 - 321.0 0.0 1.0 3.0 162.6 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000039542 Ncam1 ENSMUST00000194252 ENSMUSP00000142331 TRANSLATION protein_coding start - 5 1089.0 0.0 13.258 0.0 338.8 1.0 -4,-5 0.0331 34 -2.0 MINOR ENSMUSG00000039542 Ncam1 ENSMUST00000217121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039542 Ncam1 ENSMUST00000193547 ENSMUSP00000142275 TRANSLATION protein_coding - CCDS40617.1 1 848.0 0.0 13.81 10.6 364.4 1.0 2,-3 1.0 28 10.7 PRINCIPAL:3 ENSMUSG00000039542 Ncam1 ENSMUST00000166811 ENSMUSP00000130668 TRANSLATION protein_coding - CCDS80993.1 1 849.0 0.0 13.81 10.6 364.4 1.0 2,-3 0.9992 27 10.7 ALTERNATIVE:1 ENSMUSG00000039542 Ncam1 ENSMUST00000114476 ENSMUSP00000110120 TRANSLATION protein_coding - CCDS40618.1 1 725.0 0.0 13.96 6.9 364.7 0.0 2,-3 0.7031 24 9.845 ALTERNATIVE:1 ENSMUSG00000039542 Ncam1 ENSMUST00000194844 ENSMUSP00000141730 TRANSLATION protein_coding start/stop - 5 49.0 0.0 0.33 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039542 Ncam1 ENSMUST00000192584 ENSMUSP00000141700 TRANSLATION protein_coding - - 1 605.0 0.0 11.48 0.0 327.3 0.0 2,-3 0.0313 18 2.838 MINOR ENSMUSG00000049926 Or8b54 ENSMUST00000213958 ENSMUSP00000150012 TRANSLATION protein_coding - CCDS23026.1 2 313.0 0.0 1.0 10.4 163.8 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049926 Or8b54 ENSMUST00000217114 ENSMUSP00000150844 TRANSLATION protein_coding - CCDS23026.1 2 313.0 0.0 1.0 10.4 163.8 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049926 Or8b54 ENSMUST00000071681 ENSMUSP00000071604 TRANSLATION protein_coding - CCDS23026.1 - 313.0 0.0 1.0 10.4 163.8 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000085576 Dpy19l2 ENSMUST00000133010 ENSMUSP00000132092 TRANSLATION protein_coding - CCDS52743.1 1 773.0 0.0 10.142 0.4 762.5 0.0 -4,0 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000066235 Pomgnt2 ENSMUST00000084743 ENSMUSP00000095868 TRANSLATION protein_coding - CCDS23643.1 1 580.0 0.0 2.0 24.2 0.0 0.0 0,-3 1.0 11 10.0 PRINCIPAL:1 ENSMUSG00000066235 Pomgnt2 ENSMUST00000214533 ENSMUSP00000150975 TRANSLATION protein_coding stop - 3 41.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0339 - -2.0 MINOR ENSMUSG00000066235 Pomgnt2 ENSMUST00000216669 ENSMUSP00000149077 TRANSLATION protein_coding - CCDS23643.1 1 580.0 0.0 2.0 24.2 0.0 0.0 0,-3 1.0 11 10.0 PRINCIPAL:1 ENSMUSG00000066235 Pomgnt2 ENSMUST00000214511 ENSMUSP00000151099 TRANSLATION protein_coding stop - 5 154.0 0.0 1.0 0.0 0.0 0.0 0,-3 0.0178 - -2.0 MINOR ENSMUSG00000066235 Pomgnt2 ENSMUST00000217610 ENSMUSP00000149753 TRANSLATION protein_coding - CCDS23643.1 1 580.0 0.0 2.0 24.2 0.0 0.0 0,-3 1.0 11 10.0 PRINCIPAL:1 ENSMUSG00000066235 Pomgnt2 ENSMUST00000215008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066235 Pomgnt2 ENSMUST00000215084 ENSMUSP00000149999 TRANSLATION protein_coding stop - 2 22.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0594 - -2.0 MINOR ENSMUSG00000032435 Dync1li1 ENSMUST00000047404 ENSMUSP00000035366 TRANSLATION protein_coding - CCDS23595.1 1 523.0 16.0 5.9 9.9 847.8 0.0 -4,-2 1.0 24 21.0 PRINCIPAL:1 ENSMUSG00000032435 Dync1li1 ENSMUST00000215345 - NO_TRANSLATION retained_intron ENSMUSG00000032518 Rpsa ENSMUST00000216813 - NO_TRANSLATION retained_intron ENSMUSG00000032518 Rpsa ENSMUST00000217356 ENSMUSP00000150804 TRANSLATION nonsense_mediated_decay - - 1 133.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032518 Rpsa ENSMUST00000035105 ENSMUSP00000035105 TRANSLATION protein_coding - CCDS23623.1 1 295.0 0.0 5.58 18.5 97.8 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000032518 Rpsa ENSMUST00000217317 ENSMUSP00000148933 TRANSLATION protein_coding - CCDS23623.1 1 295.0 0.0 5.58 18.5 97.8 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000032518 Rpsa ENSMUST00000217352 ENSMUSP00000149650 TRANSLATION nonsense_mediated_decay start - 3 93.0 0.0 1.915 0.0 0.0 0.0 -4,0 0.0004 5 -2.0 MINOR ENSMUSG00000032518 Rpsa ENSMUST00000215568 - NO_TRANSLATION retained_intron ENSMUSG00000032463 Faim ENSMUST00000185472 ENSMUSP00000140627 TRANSLATION protein_coding stop - 2 174.0 0.0 3.5 6.1 290.1 0.0 -4,-6 0.2857 5 -2.0 MINOR ENSMUSG00000032463 Faim ENSMUST00000187211 - NO_TRANSLATION retained_intron ENSMUSG00000032463 Faim ENSMUST00000112911 ENSMUSP00000108532 TRANSLATION protein_coding - CCDS52897.1 2 201.0 0.0 3.5 21.5 294.9 0.0 -4,-5 0.9069 5 14.8 MINOR ENSMUSG00000032463 Faim ENSMUST00000035038 ENSMUSP00000035038 TRANSLATION protein_coding - CCDS23431.1 1 179.0 0.0 3.5 30.3 294.9 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000032463 Faim ENSMUST00000186837 - NO_TRANSLATION retained_intron ENSMUSG00000037845 Fdxacb1 ENSMUST00000042391 ENSMUSP00000037082 TRANSLATION protein_coding - CCDS23174.1 1 622.0 0.0 0.0 9.6 207.5 0.0 -4,-7 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000037845 Fdxacb1 ENSMUST00000176619 - NO_TRANSLATION retained_intron ENSMUSG00000037845 Fdxacb1 ENSMUST00000177384 ENSMUSP00000135579 TRANSLATION protein_coding stop - 1 117.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000037845 Fdxacb1 ENSMUST00000176145 ENSMUSP00000135796 TRANSLATION nonsense_mediated_decay - - 3 115.0 0.0 0.0 0.0 101.5 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000037845 Fdxacb1 ENSMUST00000176335 ENSMUSP00000135658 TRANSLATION protein_coding - - 1 420.0 0.0 0.0 0.0 63.5 0.0 -3,-6 0.0008 2 0.0 MINOR ENSMUSG00000060583 Or8b35 ENSMUST00000074611 ENSMUSP00000074193 TRANSLATION protein_coding - CCDS22992.1 - 314.0 0.0 1.0 5.0 156.0 5.0 -4,-6 0.9626 - 13.155 MINOR ENSMUSG00000060583 Or8b35 ENSMUST00000212489 ENSMUSP00000148535 TRANSLATION protein_coding - - 3 309.0 0.0 1.0 11.4 156.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000064225 Paqr9 ENSMUST00000079597 ENSMUSP00000078547 TRANSLATION protein_coding - CCDS23409.1 - 375.0 0.0 1.0 4.5 113.6 0.0 -4,0 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000039607 Rbms3 ENSMUST00000174868 ENSMUSP00000133621 TRANSLATION protein_coding - CCDS52956.1 1 402.0 0.0 5.6 0.3 109.2 0.0 -4,-5 0.2644 4 11.904 MINOR ENSMUSG00000039607 Rbms3 ENSMUST00000084824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039607 Rbms3 ENSMUST00000173429 ENSMUSP00000133900 TRANSLATION protein_coding start - 1 185.0 0.0 2.3 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000039607 Rbms3 ENSMUST00000111773 ENSMUSP00000107403 TRANSLATION protein_coding - CCDS52957.1 1 431.0 0.0 5.6 8.7 109.2 0.0 -4,-5 0.5483 4 13.032 MINOR ENSMUSG00000039607 Rbms3 ENSMUST00000210659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039607 Rbms3 ENSMUST00000069095 - NO_TRANSLATION retained_intron ENSMUSG00000039607 Rbms3 ENSMUST00000172564 ENSMUSP00000134528 TRANSLATION protein_coding stop - 5 206.0 0.0 4.8 0.0 110.8 0.0 -4,-5 0.0028 2 -2.0 MINOR ENSMUSG00000039607 Rbms3 ENSMUST00000174276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039607 Rbms3 ENSMUST00000172469 ENSMUSP00000134172 TRANSLATION protein_coding start/stop - 3 195.0 0.0 2.3 0.0 25.1 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000039607 Rbms3 ENSMUST00000164018 ENSMUSP00000131371 TRANSLATION protein_coding - CCDS57712.1 1 463.0 0.0 5.6 0.0 109.2 0.0 -4,-2 0.1948 2 11.904 MINOR ENSMUSG00000039607 Rbms3 ENSMUST00000044901 ENSMUSP00000039706 TRANSLATION protein_coding - CCDS57711.1 1 386.0 0.0 5.6 0.3 109.2 0.0 -4,-5 0.2348 4 11.904 MINOR ENSMUSG00000039607 Rbms3 ENSMUST00000111772 ENSMUSP00000107402 TRANSLATION protein_coding - CCDS52955.1 1 415.0 0.0 5.6 28.3 109.2 0.0 -4,-5 1.0 4 15.904 PRINCIPAL:1 ENSMUSG00000039607 Rbms3 ENSMUST00000239475 ENSMUSP00000159354 TRANSLATION protein_coding - - - 541.0 0.0 5.6 0.0 109.2 0.0 -4,-5 0.037 2 11.904 MINOR ENSMUSG00000039607 Rbms3 ENSMUST00000068962 ENSMUSP00000066735 TRANSLATION protein_coding - CCDS40798.1 1 414.0 0.0 5.6 6.9 109.2 0.0 -4,-5 0.5684 4 12.768 MINOR ENSMUSG00000043613 Mmp3 ENSMUST00000034497 ENSMUSP00000034497 TRANSLATION protein_coding - CCDS22806.1 1 479.0 29.0 7.8 9.9 408.4 0.0 3,-2 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000032591 Mst1 ENSMUST00000161253 ENSMUSP00000141729 TRANSLATION protein_coding start - 3 62.0 0.0 2.0 0.0 33.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032591 Mst1 ENSMUST00000035211 ENSMUSP00000035211 TRANSLATION protein_coding - CCDS40766.1 1 716.0 0.0 13.895 0.1 585.6 0.0 3,-3 0.5881 6 12.0 MINOR ENSMUSG00000032591 Mst1 ENSMUST00000160184 ENSMUSP00000125462 TRANSLATION nonsense_mediated_decay start - 3 42.0 9.0 0.0 0.0 0.0 0.0 3,-2 0.0031 - -2.0 MINOR ENSMUSG00000032591 Mst1 ENSMUST00000162886 ENSMUSP00000125175 TRANSLATION protein_coding - - 5 707.0 0.0 13.697 4.3 585.6 0.0 3,-3 1.0 6 13.604 PRINCIPAL:1 ENSMUSG00000062151 Unc13c ENSMUST00000075245 ENSMUSP00000074726 TRANSLATION protein_coding - CCDS40690.1 5 2210.0 12.0 18.305 0.4 463.2 0.0 -4,-7 1.0 25 18.0 PRINCIPAL:1 ENSMUSG00000062151 Unc13c ENSMUST00000184666 ENSMUSP00000139027 TRANSLATION protein_coding - CCDS40690.1 5 2210.0 12.0 18.305 0.4 463.2 0.0 -4,-7 1.0 25 18.0 PRINCIPAL:1 ENSMUSG00000047409 Ctdspl ENSMUST00000174841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047409 Ctdspl ENSMUST00000073109 ENSMUSP00000072852 TRANSLATION protein_coding - CCDS23605.1 1 276.0 10.0 4.896 23.9 181.0 0.0 -4,-5 1.0 5 17.524 PRINCIPAL:3 ENSMUSG00000047409 Ctdspl ENSMUST00000174132 - NO_TRANSLATION retained_intron ENSMUSG00000047409 Ctdspl ENSMUST00000172464 ENSMUSP00000133755 TRANSLATION protein_coding - - 5 265.0 10.0 4.566 27.0 181.0 0.0 -4,-5 0.8094 4 17.34 ALTERNATIVE:1 ENSMUSG00000062867 Impdh2 ENSMUST00000194365 - NO_TRANSLATION retained_intron ENSMUSG00000062867 Impdh2 ENSMUST00000193493 - NO_TRANSLATION retained_intron ENSMUSG00000062867 Impdh2 ENSMUST00000193535 - NO_TRANSLATION retained_intron ENSMUSG00000062867 Impdh2 ENSMUST00000193421 ENSMUSP00000142117 TRANSLATION protein_coding stop - 5 248.0 15.0 5.5 0.0 158.7 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000062867 Impdh2 ENSMUST00000194689 - NO_TRANSLATION retained_intron ENSMUSG00000062867 Impdh2 ENSMUST00000194904 ENSMUSP00000142305 TRANSLATION protein_coding start/stop - 3 320.0 17.0 6.1875 0.0 322.0 0.0 -4,-5 0.0012 14 -2.0 MINOR ENSMUSG00000062867 Impdh2 ENSMUST00000081111 ENSMUSP00000079888 TRANSLATION protein_coding - CCDS40768.1 1 514.0 31.0 12.33 31.9 517.5 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000062867 Impdh2 ENSMUST00000195456 - NO_TRANSLATION retained_intron ENSMUSG00000032024 Clmp ENSMUST00000134153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032024 Clmp ENSMUST00000141759 - NO_TRANSLATION retained_intron ENSMUSG00000032024 Clmp ENSMUST00000034522 ENSMUSP00000034522 TRANSLATION protein_coding - CCDS23082.1 1 373.0 0.0 5.0 5.7 92.4 0.0 2,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000032024 Clmp ENSMUST00000139577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032551 1110059G10Rik ENSMUST00000035154 ENSMUSP00000035154 TRANSLATION protein_coding - CCDS23650.1 1 155.0 0.0 0.0 20.8 99.9 0.0 -4,-2 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000032551 1110059G10Rik ENSMUST00000215129 - NO_TRANSLATION retained_intron ENSMUSG00000032551 1110059G10Rik ENSMUST00000118422 ENSMUSP00000112461 TRANSLATION protein_coding - - 1 46.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000046150 Or8b3b ENSMUST00000055099 ENSMUSP00000057210 TRANSLATION protein_coding - CCDS23022.1 - 325.0 0.0 1.0 1.2 160.3 6.0 -3,-6 0.5125 - 12.076 MINOR ENSMUSG00000046150 Or8b3b ENSMUST00000215461 ENSMUSP00000150182 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 6.3 160.3 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000046150 Or8b3b ENSMUST00000216579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032187 Smarca4 ENSMUST00000174008 ENSMUSP00000133922 TRANSLATION protein_coding - CCDS57662.1 1 1613.0 5.0 17.82 10.2 526.7 0.0 -4,-5 0.9998 17 16.0 ALTERNATIVE:1 ENSMUSG00000032187 Smarca4 ENSMUST00000172996 ENSMUSP00000133535 TRANSLATION protein_coding start/stop - 1 1267.0 5.0 14.32 0.0 456.2 0.0 -4,-6 0.0321 14 -2.0 MINOR ENSMUSG00000032187 Smarca4 ENSMUST00000034707 ENSMUSP00000034707 TRANSLATION protein_coding - CCDS22909.1 1 1614.0 5.0 17.82 10.2 526.1 0.0 -4,-5 1.0 17 15.8 PRINCIPAL:4 ENSMUSG00000032187 Smarca4 ENSMUST00000098948 ENSMUSP00000096547 TRANSLATION protein_coding - CCDS52737.1 1 1617.0 5.0 17.82 10.2 526.1 0.0 -4,-5 0.9964 17 15.8 ALTERNATIVE:1 ENSMUSG00000084786 Ubl5 ENSMUST00000161595 - NO_TRANSLATION retained_intron ENSMUSG00000084786 Ubl5 ENSMUST00000160874 ENSMUSP00000124405 TRANSLATION nonsense_mediated_decay - - 3 47.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000084786 Ubl5 ENSMUST00000161887 ENSMUSP00000123843 TRANSLATION protein_coding stop - 5 56.0 0.0 1.58 0.0 0.0 0.0 -4,-5 0.0129 - -2.0 MINOR ENSMUSG00000084786 Ubl5 ENSMUST00000161882 ENSMUSP00000125540 TRANSLATION protein_coding - CCDS80963.1 3 113.0 0.0 1.16 0.0 0.0 0.0 -4,-5 0.0691 - 3.108 MINOR ENSMUSG00000084786 Ubl5 ENSMUST00000161486 ENSMUSP00000124506 TRANSLATION protein_coding - - 2 72.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0178 - 3.348 MINOR ENSMUSG00000084786 Ubl5 ENSMUST00000162303 ENSMUSP00000124812 TRANSLATION protein_coding - CCDS52733.1 2 73.0 0.0 2.24 31.9 27.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000084786 Ubl5 ENSMUST00000161834 - NO_TRANSLATION retained_intron ENSMUSG00000084786 Ubl5 ENSMUST00000160682 ENSMUSP00000124672 TRANSLATION protein_coding - CCDS52733.1 5 73.0 0.0 2.24 31.9 27.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000084786 Ubl5 ENSMUST00000154429 - NO_TRANSLATION retained_intron ENSMUSG00000084786 Ubl5 ENSMUST00000160124 ENSMUSP00000125364 TRANSLATION protein_coding - CCDS52733.1 2 73.0 0.0 2.24 31.9 27.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000084786 Ubl5 ENSMUST00000129414 ENSMUSP00000123971 TRANSLATION protein_coding - CCDS52733.1 1 73.0 0.0 2.24 31.9 27.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032598 Nckipsd ENSMUST00000195323 ENSMUSP00000141728 TRANSLATION protein_coding - - 3 76.0 0.0 0.864 0.0 45.5 0.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000032598 Nckipsd ENSMUST00000035218 ENSMUSP00000035218 TRANSLATION protein_coding - CCDS23538.1 1 714.0 0.0 8.639 7.2 157.8 0.0 -4,-7 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000032598 Nckipsd ENSMUST00000192180 - NO_TRANSLATION retained_intron ENSMUSG00000032598 Nckipsd ENSMUST00000194819 ENSMUSP00000141702 TRANSLATION protein_coding stop - 3 101.0 0.0 0.6 0.0 36.8 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032598 Nckipsd ENSMUST00000192678 ENSMUSP00000141857 TRANSLATION protein_coding start - 1 45.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032598 Nckipsd ENSMUST00000194413 - NO_TRANSLATION retained_intron ENSMUSG00000032401 Lctl ENSMUST00000034969 ENSMUSP00000034969 TRANSLATION protein_coding - CCDS23274.1 1 566.0 12.0 11.65 3.0 529.6 0.0 3,-2 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000032401 Lctl ENSMUST00000132018 - NO_TRANSLATION retained_intron ENSMUSG00000032401 Lctl ENSMUST00000118215 ENSMUSP00000112979 TRANSLATION protein_coding - - 1 409.0 9.0 7.25 0.0 328.8 0.0 -4,-6 0.0 1 4.002 MINOR ENSMUSG00000032401 Lctl ENSMUST00000139755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032401 Lctl ENSMUST00000124020 ENSMUSP00000120815 TRANSLATION nonsense_mediated_decay - - 1 235.0 5.0 5.4 0.0 270.8 0.0 3,-2 0.0012 - -2.0 MINOR ENSMUSG00000032401 Lctl ENSMUST00000145011 - NO_TRANSLATION retained_intron ENSMUSG00000032346 Ooep ENSMUST00000034900 ENSMUSP00000034900 TRANSLATION protein_coding - CCDS23361.1 1 164.0 0.0 2.8 0.0 121.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000019066 Rab3d ENSMUST00000122211 ENSMUSP00000113322 TRANSLATION protein_coding - CCDS22912.1 1 219.0 21.0 4.33 27.9 204.0 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000019066 Rab3d ENSMUST00000154019 - NO_TRANSLATION retained_intron ENSMUSG00000019066 Rab3d ENSMUST00000119055 ENSMUSP00000114106 TRANSLATION protein_coding - - 3 136.0 14.0 2.63 0.0 129.2 0.0 -4,-5 0.0 1 5.442 MINOR ENSMUSG00000019066 Rab3d ENSMUST00000115351 ENSMUSP00000111008 TRANSLATION protein_coding - CCDS22912.1 1 219.0 21.0 4.33 27.9 204.0 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000019066 Rab3d ENSMUST00000128442 ENSMUSP00000120067 TRANSLATION protein_coding stop - 5 106.0 14.0 2.0 0.0 111.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032191 Bcl2l10 ENSMUST00000034709 ENSMUSP00000034709 TRANSLATION protein_coding - CCDS23341.1 1 191.0 0.0 1.6 0.0 61.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066747 Or8b4 ENSMUST00000216723 ENSMUSP00000149519 TRANSLATION nonsense_mediated_decay - - 5 309.0 0.0 1.0 12.5 157.7 5.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000066747 Or8b4 ENSMUST00000212878 ENSMUSP00000148312 TRANSLATION protein_coding - - - 309.0 0.0 1.0 12.5 157.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066747 Or8b4 ENSMUST00000086061 ENSMUSP00000083228 TRANSLATION protein_coding - CCDS22991.1 - 314.0 0.0 1.0 5.8 157.7 5.0 -4,-7 0.9582 - 13.251 MINOR ENSMUSG00000066747 Or8b4 ENSMUST00000214813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066747 Or8b4 ENSMUST00000214263 ENSMUSP00000149530 TRANSLATION protein_coding - - 5 309.0 0.0 1.0 12.5 157.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036395 Glb1l2 ENSMUST00000040398 ENSMUSP00000047128 TRANSLATION protein_coding - CCDS40566.1 1 652.0 16.0 15.849 1.2 381.9 0.0 -1,-7 0.381 15 18.064 MINOR ENSMUSG00000036395 Glb1l2 ENSMUST00000162702 ENSMUSP00000125022 TRANSLATION protein_coding - - 1 515.0 11.0 13.099 0.0 209.5 0.0 0,-4 0.0031 14 3.162 MINOR ENSMUSG00000036395 Glb1l2 ENSMUST00000160458 - NO_TRANSLATION retained_intron ENSMUSG00000036395 Glb1l2 ENSMUST00000216272 - NO_TRANSLATION retained_intron ENSMUSG00000036395 Glb1l2 ENSMUST00000161635 - NO_TRANSLATION retained_intron ENSMUSG00000036395 Glb1l2 ENSMUST00000162252 ENSMUSP00000124415 TRANSLATION protein_coding - - 1 592.0 12.0 14.0 0.0 381.9 0.0 0,-3 0.0537 13 11.64 MINOR ENSMUSG00000036395 Glb1l2 ENSMUST00000162378 ENSMUSP00000123830 TRANSLATION nonsense_mediated_decay - - 5 210.0 9.0 3.849 0.0 195.5 0.0 -1,-7 0.0 2 -2.0 MINOR ENSMUSG00000036395 Glb1l2 ENSMUST00000066560 ENSMUSP00000066770 TRANSLATION protein_coding - CCDS80971.1 1 636.0 16.0 15.849 7.3 381.9 0.0 -1,-7 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000046678 Or10g6 ENSMUST00000219526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046678 Or10g6 ENSMUST00000059859 ENSMUSP00000057952 TRANSLATION protein_coding - CCDS23072.1 - 310.0 0.0 1.0 13.3 183.8 7.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000046678 Or10g6 ENSMUST00000220338 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046678 Or10g6 ENSMUST00000215956 ENSMUSP00000149436 TRANSLATION protein_coding - CCDS23072.1 5 310.0 0.0 1.0 13.3 183.8 7.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032503 Arpp21 ENSMUST00000159444 - NO_TRANSLATION retained_intron ENSMUSG00000032503 Arpp21 ENSMUST00000162065 ENSMUSP00000125684 TRANSLATION protein_coding - CCDS52945.1 1 809.0 2.0 3.35 6.5 48.3 0.0 -4,-5 0.7506 9 13.126 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000159246 ENSMUSP00000123715 TRANSLATION nonsense_mediated_decay - - 1 282.0 2.0 2.35 0.0 48.3 0.0 -4,-5 0.0295 3 -2.0 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000162796 ENSMUSP00000124670 TRANSLATION protein_coding stop - 5 124.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000161467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032503 Arpp21 ENSMUST00000160741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032503 Arpp21 ENSMUST00000111872 ENSMUSP00000107503 TRANSLATION protein_coding - CCDS52945.1 5 809.0 2.0 3.35 6.5 48.3 0.0 -4,-5 0.7506 9 13.126 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000172380 ENSMUSP00000130558 TRANSLATION protein_coding - CCDS40786.1 1 88.0 0.0 0.0 4.3 0.0 0.0 -4,-5 0.3809 2 1.2 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000162533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032503 Arpp21 ENSMUST00000159183 - NO_TRANSLATION retained_intron ENSMUSG00000032503 Arpp21 ENSMUST00000070218 ENSMUSP00000069264 TRANSLATION protein_coding - CCDS52945.1 5 809.0 2.0 3.35 6.5 48.3 0.0 -4,-5 0.7506 9 13.126 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000162050 - NO_TRANSLATION retained_intron ENSMUSG00000032503 Arpp21 ENSMUST00000159451 ENSMUSP00000125095 TRANSLATION protein_coding - CCDS52943.1 1 601.0 2.0 2.35 0.0 48.3 0.0 -4,-5 0.0056 7 9.128 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000163004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032503 Arpp21 ENSMUST00000160478 ENSMUSP00000124550 TRANSLATION protein_coding stop - 5 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000161261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032503 Arpp21 ENSMUST00000162097 ENSMUSP00000124502 TRANSLATION protein_coding - CCDS23587.1 5 807.0 2.0 3.35 3.6 92.7 0.0 -4,-5 1.0 9 14.946 PRINCIPAL:1 ENSMUSG00000032503 Arpp21 ENSMUST00000162840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032503 Arpp21 ENSMUST00000178410 ENSMUSP00000136769 TRANSLATION protein_coding - CCDS40786.1 1 88.0 0.0 0.0 4.3 0.0 0.0 -4,-5 0.3809 2 1.2 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000035085 ENSMUSP00000035085 TRANSLATION protein_coding - CCDS52944.1 1 789.0 2.0 3.35 5.5 48.3 0.0 -4,-5 0.6867 9 12.762 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000159055 ENSMUSP00000123883 TRANSLATION protein_coding stop - 1 278.0 2.0 3.35 0.0 48.3 0.0 -4,-5 0.0184 3 -2.0 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000161412 ENSMUSP00000125282 TRANSLATION protein_coding - CCDS52946.1 1 248.0 2.0 2.35 0.0 48.3 0.0 -4,-5 0.0054 3 9.128 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000159667 - NO_TRANSLATION retained_intron ENSMUSG00000032503 Arpp21 ENSMUST00000163025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032503 Arpp21 ENSMUST00000162082 - NO_TRANSLATION retained_intron ENSMUSG00000032503 Arpp21 ENSMUST00000161945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032503 Arpp21 ENSMUST00000161138 - NO_TRANSLATION retained_intron ENSMUSG00000032503 Arpp21 ENSMUST00000159432 - NO_TRANSLATION retained_intron ENSMUSG00000032503 Arpp21 ENSMUST00000161097 ENSMUSP00000123937 TRANSLATION protein_coding stop - 5 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032503 Arpp21 ENSMUST00000164754 ENSMUSP00000125862 TRANSLATION protein_coding - CCDS23587.1 1 807.0 2.0 3.35 3.6 92.7 0.0 -4,-5 1.0 9 14.946 PRINCIPAL:1 ENSMUSG00000032503 Arpp21 ENSMUST00000159220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032080 Apoa4 ENSMUST00000034585 ENSMUSP00000034585 TRANSLATION protein_coding - CCDS23142.1 1 395.0 0.0 1.5 1.8 108.5 0.0 4,-1 1.0 20 13.0 PRINCIPAL:1 ENSMUSG00000040188 Scamp2 ENSMUST00000217200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040188 Scamp2 ENSMUST00000213662 - NO_TRANSLATION retained_intron ENSMUSG00000040188 Scamp2 ENSMUST00000215942 ENSMUSP00000148996 TRANSLATION protein_coding stop - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040188 Scamp2 ENSMUST00000216986 ENSMUSP00000150920 TRANSLATION protein_coding stop - 3 200.0 0.0 2.0 0.0 55.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040188 Scamp2 ENSMUST00000216667 - NO_TRANSLATION retained_intron ENSMUSG00000040188 Scamp2 ENSMUST00000045791 ENSMUSP00000038350 TRANSLATION protein_coding - CCDS23224.1 1 329.0 0.0 5.8 13.8 229.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000062296 Trank1 ENSMUST00000197049 ENSMUSP00000143534 TRANSLATION protein_coding stop - 2 142.0 0.0 1.032 0.0 0.0 0.0 -4,-6 0.0851 - -2.0 MINOR ENSMUSG00000062296 Trank1 ENSMUST00000198890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062296 Trank1 ENSMUST00000078626 ENSMUSP00000077697 TRANSLATION protein_coding - CCDS52942.1 5 2999.0 0.0 0.9 0.4 0.0 0.0 -4,-7 1.0 2 5.232 PRINCIPAL:1 ENSMUSG00000062296 Trank1 ENSMUST00000196945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062296 Trank1 ENSMUST00000200151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062296 Trank1 ENSMUST00000197650 - NO_TRANSLATION retained_intron ENSMUSG00000062296 Trank1 ENSMUST00000200272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032030 Cul5 ENSMUST00000240706 ENSMUSP00000159499 TRANSLATION protein_coding - - - 753.0 0.0 16.08 0.0 502.8 0.0 -4,-5 0.044 34 4.5 MINOR ENSMUSG00000032030 Cul5 ENSMUST00000137922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032030 Cul5 ENSMUST00000120122 ENSMUSP00000113490 TRANSLATION protein_coding - - 5 651.0 0.0 14.63 0.0 627.5 0.0 -4,-5 0.0144 27 3.624 MINOR ENSMUSG00000032030 Cul5 ENSMUST00000146405 - NO_TRANSLATION retained_intron ENSMUSG00000032030 Cul5 ENSMUST00000141803 - NO_TRANSLATION retained_intron ENSMUSG00000032030 Cul5 ENSMUST00000166367 ENSMUSP00000133144 TRANSLATION protein_coding - - 5 753.0 0.0 16.08 0.0 502.8 0.0 -4,-5 0.044 34 4.5 MINOR ENSMUSG00000032030 Cul5 ENSMUST00000123499 - NO_TRANSLATION retained_intron ENSMUSG00000032030 Cul5 ENSMUST00000141180 - NO_TRANSLATION retained_intron ENSMUSG00000032030 Cul5 ENSMUST00000133872 ENSMUSP00000121734 TRANSLATION nonsense_mediated_decay start - 5 59.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032030 Cul5 ENSMUST00000034529 ENSMUSP00000034529 TRANSLATION protein_coding - CCDS40638.2 1 855.0 0.0 16.83 1.0 693.8 0.0 -4,-2 1.0 36 12.0 PRINCIPAL:1 ENSMUSG00000039977 Deup1 ENSMUST00000115592 ENSMUSP00000111255 TRANSLATION protein_coding - CCDS22839.2 1 507.0 0.0 0.0 0.0 299.7 0.0 -4,-5 0.1923 - 6.0 MINOR ENSMUSG00000039977 Deup1 ENSMUST00000045513 ENSMUSP00000039912 TRANSLATION protein_coding - - 5 601.0 0.0 0.0 6.9 299.7 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000039977 Deup1 ENSMUST00000152377 ENSMUSP00000121526 TRANSLATION protein_coding stop - 1 397.0 0.0 0.0 0.0 299.7 0.0 -4,-5 0.0581 - -2.0 MINOR ENSMUSG00000039977 Deup1 ENSMUST00000115593 ENSMUSP00000111256 TRANSLATION protein_coding - CCDS22839.2 5 507.0 0.0 0.0 0.0 299.7 0.0 -4,-5 0.1923 - 6.0 MINOR ENSMUSG00000039977 Deup1 ENSMUST00000137164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002032 Tmem25 ENSMUST00000114705 ENSMUSP00000110353 TRANSLATION protein_coding - - 1 321.0 0.0 2.085 2.7 53.9 0.0 1,-2 0.4709 3 12.276 MINOR ENSMUSG00000002032 Tmem25 ENSMUST00000213203 ENSMUSP00000151083 TRANSLATION nonsense_mediated_decay - - 2 279.0 0.0 2.335 0.0 53.9 0.0 1,-2 0.0997 2 -2.0 MINOR ENSMUSG00000002032 Tmem25 ENSMUST00000002100 ENSMUSP00000002100 TRANSLATION protein_coding - CCDS23120.1 1 365.0 0.0 2.335 4.7 53.9 0.0 1,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000002032 Tmem25 ENSMUST00000214833 ENSMUSP00000149117 TRANSLATION protein_coding stop - 3 168.0 0.0 1.965 0.0 53.9 0.0 1,-2 0.0456 2 -2.0 MINOR ENSMUSG00000002032 Tmem25 ENSMUST00000213363 ENSMUSP00000150613 TRANSLATION protein_coding stop - 2 94.0 0.0 0.665 0.0 34.9 0.0 1,-2 0.0034 1 -2.0 MINOR ENSMUSG00000002032 Tmem25 ENSMUST00000132020 ENSMUSP00000149260 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0021 - -2.0 MINOR ENSMUSG00000002032 Tmem25 ENSMUST00000214431 ENSMUSP00000150386 TRANSLATION protein_coding stop - 2 83.0 0.0 0.665 0.0 31.3 0.0 1,-2 0.0038 1 -2.0 MINOR ENSMUSG00000002032 Tmem25 ENSMUST00000213972 ENSMUSP00000149564 TRANSLATION protein_coding stop - 3 95.0 0.0 0.665 0.0 34.9 0.0 1,-2 0.0034 1 -2.0 MINOR ENSMUSG00000032449 Slc25a36 ENSMUST00000035024 ENSMUSP00000035024 TRANSLATION protein_coding - - 1 172.0 0.0 1.1 0.0 107.3 0.0 -4,-1 0.0 1 1.38 MINOR ENSMUSG00000032449 Slc25a36 ENSMUST00000152632 - NO_TRANSLATION retained_intron ENSMUSG00000032449 Slc25a36 ENSMUST00000124250 ENSMUSP00000119696 TRANSLATION protein_coding start - 3 115.0 0.0 1.246 0.0 72.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032449 Slc25a36 ENSMUST00000148995 - NO_TRANSLATION retained_intron ENSMUSG00000032449 Slc25a36 ENSMUST00000137372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032449 Slc25a36 ENSMUST00000085206 ENSMUSP00000082302 TRANSLATION protein_coding - CCDS23420.1 1 311.0 0.0 3.41 36.2 231.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000032449 Slc25a36 ENSMUST00000153070 ENSMUSP00000116813 TRANSLATION nonsense_mediated_decay - - 5 132.0 0.0 1.81 0.0 89.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032449 Slc25a36 ENSMUST00000148337 - NO_TRANSLATION retained_intron ENSMUSG00000032449 Slc25a36 ENSMUST00000155291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066383 Iqcf1 ENSMUST00000215037 ENSMUSP00000149801 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066383 Iqcf1 ENSMUST00000085114 ENSMUSP00000082195 TRANSLATION protein_coding - CCDS52910.1 1 182.0 0.0 1.0 0.4 55.8 0.0 -4,-5 0.2982 - 8.0 ALTERNATIVE:2 ENSMUSG00000066383 Iqcf1 ENSMUST00000164965 ENSMUSP00000126039 TRANSLATION protein_coding - CCDS52911.1 1 147.0 0.0 1.0 2.8 55.8 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000039632 Odad3 ENSMUST00000115336 ENSMUSP00000110993 TRANSLATION protein_coding - CCDS52740.1 1 594.0 0.0 0.0 1.9 0.0 0.0 -2,-4 0.8784 4 1.0 ALTERNATIVE:2 ENSMUSG00000039632 Odad3 ENSMUST00000044926 ENSMUSP00000041117 TRANSLATION protein_coding - CCDS22917.1 1 593.0 0.0 0.0 1.9 0.0 0.0 -2,-4 0.9699 4 1.0 PRINCIPAL:4 ENSMUSG00000039632 Odad3 ENSMUST00000214420 - NO_TRANSLATION retained_intron ENSMUSG00000035443 Thyn1 ENSMUST00000213770 ENSMUSP00000151200 TRANSLATION protein_coding - - 1 167.0 0.0 3.35 1.0 127.1 0.0 -4,-5 0.0041 5 5.682 MINOR ENSMUSG00000035443 Thyn1 ENSMUST00000216361 - NO_TRANSLATION retained_intron ENSMUSG00000035443 Thyn1 ENSMUST00000039161 ENSMUSP00000037614 TRANSLATION protein_coding - CCDS22937.1 1 226.0 0.0 5.01 0.0 177.1 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000035443 Thyn1 ENSMUST00000213683 ENSMUSP00000150823 TRANSLATION protein_coding - CCDS22937.1 5 226.0 0.0 5.01 0.0 177.1 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000035443 Thyn1 ENSMUST00000217143 - NO_TRANSLATION retained_intron ENSMUSG00000035443 Thyn1 ENSMUST00000215024 - NO_TRANSLATION retained_intron ENSMUSG00000035443 Thyn1 ENSMUST00000214458 - NO_TRANSLATION retained_intron ENSMUSG00000035443 Thyn1 ENSMUST00000214910 - NO_TRANSLATION retained_intron ENSMUSG00000031935 Med17 ENSMUST00000216406 ENSMUSP00000150968 TRANSLATION protein_coding stop - 5 211.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031935 Med17 ENSMUST00000034411 ENSMUSP00000034411 TRANSLATION protein_coding - CCDS22834.1 1 649.0 0.0 4.525 25.8 38.4 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000031935 Med17 ENSMUST00000213788 ENSMUSP00000148980 TRANSLATION protein_coding start - 3 199.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031935 Med17 ENSMUST00000213356 - NO_TRANSLATION retained_intron ENSMUSG00000044976 Wdr72 ENSMUST00000098564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044976 Wdr72 ENSMUST00000184725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044976 Wdr72 ENSMUST00000215440 ENSMUSP00000149349 TRANSLATION protein_coding - - 5 1102.0 0.0 3.399 7.3 0.0 0.0 -4,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000044976 Wdr72 ENSMUST00000149439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044976 Wdr72 ENSMUST00000055879 ENSMUSP00000057320 TRANSLATION protein_coding - CCDS23338.2 1 1114.0 0.0 3.399 1.0 0.0 0.0 -4,-2 0.6338 - 6.0 MINOR ENSMUSG00000074505 Fat3 ENSMUST00000217187 ENSMUSP00000150638 TRANSLATION protein_coding start - 3 404.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0021 3 -2.0 MINOR ENSMUSG00000074505 Fat3 ENSMUST00000082170 ENSMUSP00000080808 TRANSLATION protein_coding - CCDS40539.1 5 4551.0 262.0 9.1 0.0 1552.4 0.0 4,-1 0.8104 32 18.0 MINOR ENSMUSG00000074505 Fat3 ENSMUST00000215388 - NO_TRANSLATION retained_intron ENSMUSG00000074505 Fat3 ENSMUST00000213517 - NO_TRANSLATION retained_intron ENSMUSG00000074505 Fat3 ENSMUST00000217308 ENSMUSP00000148968 TRANSLATION protein_coding - - 5 4555.0 262.0 9.1 17.5 1552.4 0.0 3,-1 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000032803 Cdv3 ENSMUST00000116517 ENSMUSP00000112216 TRANSLATION protein_coding - CCDS52902.1 1 109.0 0.0 0.0 3.0 105.2 0.0 -4,-5 0.1599 4 0.624 MINOR ENSMUSG00000032803 Cdv3 ENSMUST00000189875 ENSMUSP00000140690 TRANSLATION protein_coding start - 3 154.0 0.0 0.0 0.0 143.7 0.0 -4,-5 0.5096 8 -2.0 MINOR ENSMUSG00000032803 Cdv3 ENSMUST00000072249 ENSMUSP00000072101 TRANSLATION protein_coding - CCDS40748.1 1 236.0 0.0 0.0 0.4 146.7 0.0 -4,-5 0.2677 10 2.0 ALTERNATIVE:2 ENSMUSG00000032803 Cdv3 ENSMUST00000190226 ENSMUSP00000140900 TRANSLATION protein_coding - - 5 154.0 0.0 0.0 7.4 105.2 0.0 -4,-5 1.0 5 2.0 PRINCIPAL:2 ENSMUSG00000032803 Cdv3 ENSMUST00000189896 ENSMUSP00000139440 TRANSLATION protein_coding - CCDS81064.1 1 235.0 0.0 0.0 0.4 146.7 0.0 -4,-5 0.2629 10 2.0 ALTERNATIVE:2 ENSMUSG00000032803 Cdv3 ENSMUST00000190127 - NO_TRANSLATION retained_intron ENSMUSG00000032803 Cdv3 ENSMUST00000035484 ENSMUSP00000044420 TRANSLATION protein_coding - CCDS23454.1 1 281.0 0.0 0.0 0.4 146.7 0.0 -4,-5 0.2942 11 2.0 ALTERNATIVE:2 ENSMUSG00000034263 Ints14 ENSMUST00000215789 - NO_TRANSLATION retained_intron ENSMUSG00000034263 Ints14 ENSMUST00000170517 ENSMUSP00000127420 TRANSLATION protein_coding - CCDS40668.1 1 515.0 3.0 9.75 29.8 65.9 0.0 -4,-7 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000034263 Ints14 ENSMUST00000037504 ENSMUSP00000049284 TRANSLATION protein_coding - CCDS40668.1 1 515.0 3.0 9.75 29.8 65.9 0.0 -4,-7 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000042790 Rnf214 ENSMUST00000162699 ENSMUSP00000125351 TRANSLATION nonsense_mediated_decay - - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0134 - -2.0 MINOR ENSMUSG00000042790 Rnf214 ENSMUST00000215005 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042790 Rnf214 ENSMUST00000160699 ENSMUSP00000123754 TRANSLATION protein_coding - CCDS23136.1 1 668.0 8.0 0.0 2.4 0.0 0.0 -4,-5 0.2428 17 6.489 MINOR ENSMUSG00000042790 Rnf214 ENSMUST00000160811 ENSMUSP00000125420 TRANSLATION nonsense_mediated_decay - - 3 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0134 - -2.0 MINOR ENSMUSG00000042790 Rnf214 ENSMUST00000058720 ENSMUSP00000060941 TRANSLATION protein_coding - CCDS23136.1 1 668.0 8.0 0.0 2.4 0.0 0.0 -4,-5 0.2428 17 6.489 MINOR ENSMUSG00000042790 Rnf214 ENSMUST00000160868 - NO_TRANSLATION retained_intron ENSMUSG00000042790 Rnf214 ENSMUST00000213659 ENSMUSP00000149012 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0114 - -2.0 MINOR ENSMUSG00000042790 Rnf214 ENSMUST00000160469 - NO_TRANSLATION retained_intron ENSMUSG00000042790 Rnf214 ENSMUST00000160325 - NO_TRANSLATION retained_intron ENSMUSG00000042790 Rnf214 ENSMUST00000161203 ENSMUSP00000123995 TRANSLATION protein_coding - CCDS80988.1 1 548.0 8.0 0.0 9.6 0.0 0.0 -4,-5 1.0 13 9.0 PRINCIPAL:1 ENSMUSG00000042790 Rnf214 ENSMUST00000162369 ENSMUSP00000149889 TRANSLATION nonsense_mediated_decay - - 2 714.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0475 15 -2.0 MINOR ENSMUSG00000042790 Rnf214 ENSMUST00000161187 ENSMUSP00000124296 TRANSLATION protein_coding - CCDS80987.1 1 513.0 8.0 0.0 1.3 0.0 0.0 -4,-5 0.1778 13 6.105 MINOR ENSMUSG00000042790 Rnf214 ENSMUST00000100407 - NO_TRANSLATION retained_intron ENSMUSG00000047220 Iho1 ENSMUST00000076592 ENSMUSP00000075898 TRANSLATION protein_coding - CCDS57701.1 1 574.0 0.0 2.9 0.1 898.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036611 Eepd1 ENSMUST00000040677 ENSMUSP00000047083 TRANSLATION protein_coding - CCDS22935.1 1 569.0 0.0 0.0 9.9 139.0 0.0 -4,-7 1.0 14 9.0 PRINCIPAL:1 ENSMUSG00000036611 Eepd1 ENSMUST00000156237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042396 Rbm7 ENSMUST00000170000 ENSMUSP00000126374 TRANSLATION protein_coding - CCDS23155.1 1 265.0 0.0 2.65 8.5 67.9 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000042396 Rbm7 ENSMUST00000213276 ENSMUSP00000149397 TRANSLATION protein_coding - - 2 158.0 0.0 2.65 0.0 67.9 0.0 -4,-5 0.007 4 12.0 MINOR ENSMUSG00000042396 Rbm7 ENSMUST00000213525 - NO_TRANSLATION retained_intron ENSMUSG00000042396 Rbm7 ENSMUST00000214923 ENSMUSP00000150767 TRANSLATION nonsense_mediated_decay - - 1 39.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000086158 Pierce2 ENSMUST00000249121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086158 Pierce2 ENSMUST00000249120 ENSMUSP00000159587 TRANSLATION protein_coding - - - 102.0 0.0 0.8 0.3 45.1 0.0 -4,-5 0.0498 3 6.0 ALTERNATIVE:2 ENSMUSG00000086158 Pierce2 ENSMUST00000184123 - NO_TRANSLATION retained_intron ENSMUSG00000086158 Pierce2 ENSMUST00000124565 ENSMUSP00000139187 TRANSLATION protein_coding - CCDS72276.1 1 122.0 0.0 0.8 1.3 45.1 0.0 -4,-5 1.0 3 7.0 PRINCIPAL:2 ENSMUSG00000049334 Or8b43 ENSMUST00000050733 ENSMUSP00000055975 TRANSLATION protein_coding - CCDS52772.1 - 309.0 0.0 1.0 10.4 162.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049334 Or8b43 ENSMUST00000213105 ENSMUSP00000151061 TRANSLATION protein_coding - CCDS52772.1 5 309.0 0.0 1.0 10.4 162.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039461 Tcta ENSMUST00000195615 ENSMUSP00000141592 TRANSLATION protein_coding - - 5 133.0 0.0 0.4 0.0 125.9 1.0 -2,-4 0.0259 - 10.842 MINOR ENSMUSG00000039461 Tcta ENSMUST00000044725 ENSMUSP00000045063 TRANSLATION protein_coding - CCDS23520.1 1 122.0 0.0 0.4 3.3 123.1 1.0 -2,-4 0.2393 - 11.274 MINOR ENSMUSG00000039461 Tcta ENSMUST00000192886 ENSMUSP00000142002 TRANSLATION protein_coding - CCDS81073.1 2 106.0 0.0 0.4 12.5 145.2 1.0 -2,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000013419 Zfp651 ENSMUST00000093772 ENSMUSP00000091286 TRANSLATION protein_coding - CCDS52968.1 5 729.0 32.0 3.29 0.1 169.3 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000013419 Zfp651 ENSMUST00000214732 ENSMUSP00000150384 TRANSLATION nonsense_mediated_decay start - 5 627.0 12.0 0.84 0.0 103.0 0.0 -4,-1 0.004 3 -2.0 MINOR ENSMUSG00000013419 Zfp651 ENSMUST00000215081 - NO_TRANSLATION retained_intron ENSMUSG00000013419 Zfp651 ENSMUST00000213743 - NO_TRANSLATION retained_intron ENSMUSG00000034684 Sema3f ENSMUST00000193108 ENSMUSP00000141878 TRANSLATION protein_coding stop - 5 191.0 0.0 3.74 0.0 123.1 0.0 3,-2 0.0004 - -2.0 MINOR ENSMUSG00000034684 Sema3f ENSMUST00000080560 ENSMUSP00000079400 TRANSLATION protein_coding - CCDS23505.1 1 754.0 0.0 11.942 9.7 489.3 0.0 3,-2 1.0 3 10.13 PRINCIPAL:1 ENSMUSG00000034684 Sema3f ENSMUST00000194039 ENSMUSP00000142221 TRANSLATION nonsense_mediated_decay - - 1 185.0 0.0 3.41 0.0 114.0 0.0 3,-2 0.0004 - -2.0 MINOR ENSMUSG00000034684 Sema3f ENSMUST00000192783 ENSMUSP00000141668 TRANSLATION protein_coding start - 3 284.0 0.0 1.972 0.0 89.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034684 Sema3f ENSMUST00000192727 ENSMUSP00000141865 TRANSLATION protein_coding - CCDS81069.1 1 785.0 0.0 12.074 11.9 483.9 0.0 3,-2 0.9429 3 9.0 MINOR ENSMUSG00000034684 Sema3f ENSMUST00000193665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034684 Sema3f ENSMUST00000192712 - NO_TRANSLATION retained_intron ENSMUSG00000034684 Sema3f ENSMUST00000194846 - NO_TRANSLATION retained_intron ENSMUSG00000034684 Sema3f ENSMUST00000194424 ENSMUSP00000142178 TRANSLATION nonsense_mediated_decay start - 3 116.0 0.0 1.8 0.0 124.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034684 Sema3f ENSMUST00000195023 ENSMUSP00000141350 TRANSLATION protein_coding start/stop - 3 148.0 0.0 3.21 0.0 104.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034684 Sema3f ENSMUST00000192157 - NO_TRANSLATION retained_intron ENSMUSG00000034684 Sema3f ENSMUST00000195267 - NO_TRANSLATION retained_intron ENSMUSG00000037716 Ccdc33 ENSMUST00000042205 ENSMUSP00000040899 TRANSLATION protein_coding - CCDS40654.1 1 731.0 0.0 0.0 0.1 29.0 0.0 -4,-5 0.3882 9 0.0 ALTERNATIVE:2 ENSMUSG00000037716 Ccdc33 ENSMUST00000143797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037716 Ccdc33 ENSMUST00000098681 ENSMUSP00000096278 TRANSLATION protein_coding - - 1 278.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.363 1 0.0 MINOR ENSMUSG00000037716 Ccdc33 ENSMUST00000123746 - NO_TRANSLATION retained_intron ENSMUSG00000037716 Ccdc33 ENSMUST00000151404 - NO_TRANSLATION retained_intron ENSMUSG00000037716 Ccdc33 ENSMUST00000098682 ENSMUSP00000096279 TRANSLATION protein_coding - CCDS52811.1 1 985.0 0.0 0.0 0.0 29.0 0.0 -4,-6 0.514 10 0.0 PRINCIPAL:3 ENSMUSG00000037716 Ccdc33 ENSMUST00000119665 ENSMUSP00000112613 TRANSLATION protein_coding - CCDS81006.1 1 730.0 0.0 0.0 0.1 29.0 0.0 -4,-5 0.3882 9 0.0 ALTERNATIVE:2 ENSMUSG00000037716 Ccdc33 ENSMUST00000146741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037716 Ccdc33 ENSMUST00000215944 ENSMUSP00000149337 TRANSLATION protein_coding - - 5 950.0 0.0 0.0 0.0 29.0 0.0 -4,-6 0.2231 11 0.0 ALTERNATIVE:2 ENSMUSG00000037716 Ccdc33 ENSMUST00000144887 - NO_TRANSLATION retained_intron ENSMUSG00000094182 Or8g23 ENSMUST00000215049 ENSMUSP00000150274 TRANSLATION protein_coding - CCDS23037.1 3 311.0 0.0 1.0 11.4 166.0 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094182 Or8g23 ENSMUST00000055567 ENSMUSP00000058346 TRANSLATION protein_coding - CCDS23037.1 - 311.0 0.0 1.0 11.4 166.0 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032507 Fbxl2 ENSMUST00000139757 - NO_TRANSLATION retained_intron ENSMUSG00000032507 Fbxl2 ENSMUST00000127352 - NO_TRANSLATION retained_intron ENSMUSG00000032507 Fbxl2 ENSMUST00000141832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032507 Fbxl2 ENSMUST00000143180 ENSMUSP00000117058 TRANSLATION nonsense_mediated_decay - - 1 39.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032507 Fbxl2 ENSMUST00000117537 ENSMUSP00000114075 TRANSLATION nonsense_mediated_decay - CCDS40790.1 2 423.0 0.0 11.25 19.8 112.3 0.0 -4,-5 1.0 5 -2.0 MINOR ENSMUSG00000032507 Fbxl2 ENSMUST00000035090 ENSMUSP00000035090 TRANSLATION protein_coding - CCDS40790.1 1 423.0 0.0 11.25 19.8 112.3 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000058270 Or8c9 ENSMUST00000212354 ENSMUSP00000148761 TRANSLATION protein_coding - - - 310.0 0.0 1.0 11.5 156.5 8.0 -4,-7 0.8822 - 11.0 ALTERNATIVE:1 ENSMUSG00000058270 Or8c9 ENSMUST00000214155 ENSMUSP00000150567 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 11.5 156.5 8.0 -4,-7 0.8822 - 11.0 ALTERNATIVE:1 ENSMUSG00000058270 Or8c9 ENSMUST00000071449 ENSMUSP00000071393 TRANSLATION protein_coding - CCDS23004.1 - 313.0 0.0 1.0 11.5 156.5 8.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000032079 Apoa5 ENSMUST00000121598 ENSMUSP00000113413 TRANSLATION protein_coding - CCDS23143.1 1 368.0 0.0 1.184 0.1 201.1 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000032079 Apoa5 ENSMUST00000214202 ENSMUSP00000149834 TRANSLATION protein_coding stop - 5 138.0 0.0 0.226 0.0 0.0 0.0 4,-1 0.0025 - -2.0 MINOR ENSMUSG00000032079 Apoa5 ENSMUST00000215458 ENSMUSP00000149877 TRANSLATION protein_coding stop - 5 112.0 0.0 0.16 0.0 0.0 0.0 4,-1 0.0025 - -2.0 MINOR ENSMUSG00000032079 Apoa5 ENSMUST00000034584 ENSMUSP00000034584 TRANSLATION protein_coding - CCDS23143.1 1 368.0 0.0 1.184 0.1 201.1 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000032079 Apoa5 ENSMUST00000215187 ENSMUSP00000151068 TRANSLATION protein_coding - - 5 47.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - 0.0 MINOR ENSMUSG00000032079 Apoa5 ENSMUST00000213878 ENSMUSP00000149135 TRANSLATION protein_coding - - 3 115.0 0.0 0.41 0.0 0.0 0.0 4,-1 0.0025 1 2.076 MINOR ENSMUSG00000047412 Zbtb44 ENSMUST00000214585 ENSMUSP00000149121 TRANSLATION protein_coding start - 5 595.0 14.0 2.77 0.0 175.6 0.0 -4,-5 0.038 4 -2.0 MINOR ENSMUSG00000047412 Zbtb44 ENSMUST00000213202 ENSMUSP00000150226 TRANSLATION nonsense_mediated_decay start - 3 58.0 0.0 0.24 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047412 Zbtb44 ENSMUST00000217092 ENSMUSP00000149969 TRANSLATION protein_coding - - 5 616.0 14.0 2.97 25.7 175.6 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000047412 Zbtb44 ENSMUST00000167346 ENSMUSP00000133109 TRANSLATION protein_coding - CCDS40568.1 3 435.0 8.0 2.29 2.0 140.5 0.0 -4,-7 0.0443 4 10.678 MINOR ENSMUSG00000047412 Zbtb44 ENSMUST00000216649 ENSMUSP00000149386 TRANSLATION protein_coding - CCDS40568.1 1 435.0 8.0 2.29 2.0 140.5 0.0 -4,-7 0.0443 4 10.678 MINOR ENSMUSG00000047412 Zbtb44 ENSMUST00000115222 ENSMUSP00000110877 TRANSLATION protein_coding - CCDS52747.1 5 453.0 7.0 2.49 24.9 140.5 0.0 -4,-7 0.6969 4 14.126 MINOR ENSMUSG00000004936 Map2k1 ENSMUST00000152535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004936 Map2k1 ENSMUST00000147796 - NO_TRANSLATION retained_intron ENSMUSG00000004936 Map2k1 ENSMUST00000005066 ENSMUSP00000005066 TRANSLATION protein_coding - CCDS23277.1 1 393.0 21.0 7.375 29.9 209.5 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000004936 Map2k1 ENSMUST00000152675 - NO_TRANSLATION retained_intron ENSMUSG00000032010 Usp2 ENSMUST00000176022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032010 Usp2 ENSMUST00000034508 ENSMUSP00000034508 TRANSLATION protein_coding - CCDS23094.1 1 619.0 4.0 9.5 2.2 246.4 0.0 -4,-7 0.3897 12 10.16 MINOR ENSMUSG00000032010 Usp2 ENSMUST00000177422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032010 Usp2 ENSMUST00000114830 ENSMUSP00000110479 TRANSLATION protein_coding - CCDS23094.1 1 619.0 4.0 9.5 2.2 246.4 0.0 -4,-7 0.3897 12 10.16 MINOR ENSMUSG00000032010 Usp2 ENSMUST00000065461 ENSMUSP00000070264 TRANSLATION protein_coding - CCDS23095.1 1 396.0 4.0 9.5 30.7 246.4 0.0 -4,-7 1.0 10 14.0 PRINCIPAL:4 ENSMUSG00000032010 Usp2 ENSMUST00000176671 ENSMUSP00000135859 TRANSLATION protein_coding stop - 3 174.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000032010 Usp2 ENSMUST00000176416 ENSMUSP00000135482 TRANSLATION protein_coding - - 1 393.0 4.0 9.5 30.7 246.4 0.0 -4,-6 0.8922 10 14.0 ALTERNATIVE:1 ENSMUSG00000032010 Usp2 ENSMUST00000175816 ENSMUSP00000135788 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000032010 Usp2 ENSMUST00000177054 ENSMUSP00000135018 TRANSLATION protein_coding - CCDS23094.1 1 619.0 4.0 9.5 2.2 246.4 0.0 -4,-7 0.3897 12 10.16 MINOR ENSMUSG00000039438 Ttc36 ENSMUST00000044694 ENSMUSP00000042183 TRANSLATION protein_coding - CCDS23121.1 1 186.0 0.0 2.0 14.0 0.0 0.0 -4,-5 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000039438 Ttc36 ENSMUST00000216449 - NO_TRANSLATION retained_intron ENSMUSG00000023333 Gcm1 ENSMUST00000024104 ENSMUSP00000024104 TRANSLATION protein_coding - CCDS23356.1 1 436.0 8.0 3.6 10.7 239.4 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000053747 Sox14 ENSMUST00000054819 ENSMUSP00000091310 TRANSLATION protein_coding - CCDS57695.1 - 240.0 0.0 1.33 34.9 127.0 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000053747 Sox14 ENSMUST00000183065 ENSMUSP00000138239 TRANSLATION protein_coding start - 3 177.0 0.0 1.0 0.0 94.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000036244 Tbc1d21 ENSMUST00000213847 ENSMUSP00000150275 TRANSLATION nonsense_mediated_decay - - 1 309.0 0.0 7.45 0.0 72.3 0.0 -4,-7 0.0034 1 -2.0 MINOR ENSMUSG00000036244 Tbc1d21 ENSMUST00000040217 ENSMUSP00000037525 TRANSLATION protein_coding - CCDS40655.1 1 336.0 0.0 9.53 11.6 76.5 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000036972 Zic4 ENSMUST00000173054 ENSMUSP00000134364 TRANSLATION protein_coding stop - 2 181.0 6.0 1.4 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000036972 Zic4 ENSMUST00000172646 ENSMUSP00000134053 TRANSLATION protein_coding - CCDS23404.1 5 334.0 21.0 3.0 4.9 48.4 0.0 -4,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000036972 Zic4 ENSMUST00000174611 - NO_TRANSLATION retained_intron ENSMUSG00000036972 Zic4 ENSMUST00000172978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036972 Zic4 ENSMUST00000085242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036972 Zic4 ENSMUST00000172858 - NO_TRANSLATION retained_intron ENSMUSG00000036972 Zic4 ENSMUST00000170572 - NO_TRANSLATION retained_intron ENSMUSG00000036972 Zic4 ENSMUST00000066384 ENSMUSP00000069568 TRANSLATION protein_coding - - 1 341.0 21.0 3.0 0.0 48.4 0.0 -3,0 0.1269 - 18.0 MINOR ENSMUSG00000036972 Zic4 ENSMUST00000174802 - NO_TRANSLATION retained_intron ENSMUSG00000036972 Zic4 ENSMUST00000174212 ENSMUSP00000133808 TRANSLATION protein_coding stop - 3 158.0 3.0 0.65 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000036972 Zic4 ENSMUST00000173342 ENSMUSP00000133974 TRANSLATION protein_coding stop - 3 67.0 0.0 0.25 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000036972 Zic4 ENSMUST00000173933 ENSMUSP00000133958 TRANSLATION protein_coding - CCDS23404.1 5 334.0 21.0 3.0 4.9 48.4 0.0 -4,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000042787 Exog ENSMUST00000164213 ENSMUSP00000129273 TRANSLATION nonsense_mediated_decay - - 1 80.0 0.0 0.0 0.0 0.0 2.0 -4,0 0.0009 - -2.0 MINOR ENSMUSG00000042787 Exog ENSMUST00000214462 ENSMUSP00000150704 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 0.0 0.0 0.0 2.0 -4,0 0.0009 - -2.0 MINOR ENSMUSG00000042787 Exog ENSMUST00000035094 ENSMUSP00000035094 TRANSLATION protein_coding - CCDS23616.1 1 368.0 0.0 5.33 4.6 210.5 2.0 -4,0 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000042787 Exog ENSMUST00000215819 - NO_TRANSLATION retained_intron ENSMUSG00000042787 Exog ENSMUST00000214140 ENSMUSP00000149710 TRANSLATION nonsense_mediated_decay - - 1 114.0 0.0 1.632 0.0 25.1 2.0 -4,0 0.0016 2 -2.0 MINOR ENSMUSG00000111814 Or8c18 ENSMUST00000216276 ENSMUSP00000149903 TRANSLATION protein_coding - - 5 308.0 0.0 1.0 10.4 167.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111814 Or8c18 ENSMUST00000215219 ENSMUSP00000149692 TRANSLATION protein_coding - - 5 308.0 0.0 1.0 10.4 167.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111814 Or8c18 ENSMUST00000214066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000029530 Ccr9 ENSMUST00000163559 ENSMUSP00000131782 TRANSLATION protein_coding - CCDS23662.1 1 369.0 0.0 1.0 9.6 156.2 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029530 Ccr9 ENSMUST00000168910 ENSMUSP00000126758 TRANSLATION protein_coding - CCDS23662.1 1 369.0 0.0 1.0 9.6 156.2 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029530 Ccr9 ENSMUST00000215921 - NO_TRANSLATION retained_intron ENSMUSG00000029530 Ccr9 ENSMUST00000166236 ENSMUSP00000127024 TRANSLATION protein_coding - CCDS23662.1 1 369.0 0.0 1.0 9.6 156.2 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029530 Ccr9 ENSMUST00000180093 ENSMUSP00000137144 TRANSLATION protein_coding - CCDS23662.1 1 369.0 0.0 1.0 9.6 156.2 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029530 Ccr9 ENSMUST00000111454 ENSMUSP00000107081 TRANSLATION protein_coding - - 5 357.0 0.0 1.0 1.7 156.2 5.0 -4,-6 0.3095 - 12.243 MINOR ENSMUSG00000031995 St14 ENSMUST00000214418 ENSMUSP00000150666 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000031995 St14 ENSMUST00000123557 ENSMUSP00000121971 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000031995 St14 ENSMUST00000133904 - NO_TRANSLATION retained_intron ENSMUSG00000031995 St14 ENSMUST00000148789 - NO_TRANSLATION retained_intron ENSMUSG00000031995 St14 ENSMUST00000034478 ENSMUSP00000034478 TRANSLATION protein_coding - CCDS22948.1 1 855.0 10.0 4.0 9.8 528.8 0.0 -4,-7 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000031995 St14 ENSMUST00000217404 - NO_TRANSLATION retained_intron ENSMUSG00000041361 Myzap ENSMUST00000163708 - NO_TRANSLATION retained_intron ENSMUSG00000041361 Myzap ENSMUST00000166112 ENSMUSP00000131643 TRANSLATION protein_coding stop - 3 93.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.019 4 -2.0 MINOR ENSMUSG00000041361 Myzap ENSMUST00000169573 ENSMUSP00000127028 TRANSLATION protein_coding - - 5 438.0 0.0 5.025 2.1 0.0 0.0 -3,-1 0.1643 14 5.223 MINOR ENSMUSG00000041361 Myzap ENSMUST00000171977 ENSMUSP00000131906 TRANSLATION protein_coding stop - 5 99.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0183 4 -2.0 MINOR ENSMUSG00000041361 Myzap ENSMUST00000093823 ENSMUSP00000091342 TRANSLATION protein_coding - CCDS23327.1 1 466.0 0.0 5.625 8.8 0.0 0.0 -3,-1 1.0 17 9.0 PRINCIPAL:1 ENSMUSG00000091956 C2cd4b ENSMUST00000171652 ENSMUSP00000131138 TRANSLATION protein_coding - CCDS40675.1 1 340.0 0.0 0.2 0.0 0.0 0.0 -4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000034837 Gnat1 ENSMUST00000194802 - NO_TRANSLATION retained_intron ENSMUSG00000034837 Gnat1 ENSMUST00000193188 - NO_TRANSLATION retained_intron ENSMUSG00000034837 Gnat1 ENSMUST00000195129 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034837 Gnat1 ENSMUST00000194153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034837 Gnat1 ENSMUST00000192271 ENSMUSP00000141571 TRANSLATION nonsense_mediated_decay - - 3 87.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000034837 Gnat1 ENSMUST00000195849 - NO_TRANSLATION retained_intron ENSMUSG00000034837 Gnat1 ENSMUST00000010205 ENSMUSP00000010205 TRANSLATION protein_coding - CCDS23504.1 1 350.0 24.0 7.5 36.9 404.9 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000074139 1700057G04Rik ENSMUST00000135182 ENSMUSP00000140686 TRANSLATION nonsense_mediated_decay start - 3 79.0 0.0 0.0 0.0 72.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000074139 1700057G04Rik ENSMUST00000185580 ENSMUSP00000139734 TRANSLATION protein_coding - - 1 156.0 0.0 0.0 0.1 191.7 0.0 -4,-7 0.0004 - 0.438 MINOR ENSMUSG00000074139 1700057G04Rik ENSMUST00000150594 ENSMUSP00000117673 TRANSLATION protein_coding stop - 2 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074139 1700057G04Rik ENSMUST00000098477 ENSMUSP00000096077 TRANSLATION protein_coding - CCDS23406.1 1 232.0 0.0 0.0 3.4 284.4 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000074139 1700057G04Rik ENSMUST00000134712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074139 1700057G04Rik ENSMUST00000126606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047667 Or8d1 ENSMUST00000104874 ENSMUSP00000100467 TRANSLATION protein_coding - CCDS23030.1 - 308.0 0.0 1.0 10.7 166.0 0.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032599 Ip6k2 ENSMUST00000193634 - NO_TRANSLATION retained_intron ENSMUSG00000032599 Ip6k2 ENSMUST00000193055 ENSMUSP00000141515 TRANSLATION protein_coding start - 5 31.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000032599 Ip6k2 ENSMUST00000195514 ENSMUSP00000141831 TRANSLATION protein_coding stop - 2 151.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032599 Ip6k2 ENSMUST00000193970 - NO_TRANSLATION retained_intron ENSMUSG00000032599 Ip6k2 ENSMUST00000085018 ENSMUSP00000082091 TRANSLATION protein_coding - CCDS23537.1 1 448.0 11.0 0.8 1.5 207.8 0.0 -4,-6 1.0 2 12.294 PRINCIPAL:2 ENSMUSG00000032599 Ip6k2 ENSMUST00000194782 ENSMUSP00000141461 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032599 Ip6k2 ENSMUST00000192226 ENSMUSP00000141242 TRANSLATION nonsense_mediated_decay - - 2 73.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032599 Ip6k2 ENSMUST00000192028 ENSMUSP00000142277 TRANSLATION protein_coding - - 1 123.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000032599 Ip6k2 ENSMUST00000195580 - NO_TRANSLATION retained_intron ENSMUSG00000032599 Ip6k2 ENSMUST00000194875 ENSMUSP00000142239 TRANSLATION protein_coding - - 2 110.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000032599 Ip6k2 ENSMUST00000193560 ENSMUSP00000141605 TRANSLATION protein_coding - - 1 402.0 11.0 0.8 0.0 207.8 0.0 -4,-6 0.0776 2 12.0 ALTERNATIVE:2 ENSMUSG00000032599 Ip6k2 ENSMUST00000192307 ENSMUSP00000142134 TRANSLATION protein_coding - - 1 98.0 0.0 0.0 2.7 0.0 0.0 -4,-5 0.3222 - 1.0 MINOR ENSMUSG00000004099 Dnmt1 ENSMUST00000177754 ENSMUSP00000136982 TRANSLATION protein_coding - CCDS57653.1 1 1501.0 38.0 22.0975 0.0 351.8 0.0 -4,-7 0.3286 44 13.692 MINOR ENSMUSG00000004099 Dnmt1 ENSMUST00000214964 - NO_TRANSLATION retained_intron ENSMUSG00000004099 Dnmt1 ENSMUST00000004202 ENSMUSP00000004202 TRANSLATION protein_coding - CCDS57655.1 1 1620.0 38.0 22.0975 0.0 423.6 0.0 -4,-1 1.0 49 18.0 PRINCIPAL:1 ENSMUSG00000004099 Dnmt1 ENSMUST00000215545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004099 Dnmt1 ENSMUST00000178110 ENSMUSP00000136669 TRANSLATION protein_coding - CCDS57653.1 1 1501.0 38.0 22.0975 0.0 351.8 0.0 -4,-7 0.3286 44 13.692 MINOR ENSMUSG00000004099 Dnmt1 ENSMUST00000216135 - NO_TRANSLATION retained_intron ENSMUSG00000004099 Dnmt1 ENSMUST00000216540 ENSMUSP00000150433 TRANSLATION protein_coding - CCDS57654.1 1 1502.0 38.0 22.0975 0.0 351.8 0.0 -4,-7 0.3286 44 13.692 MINOR ENSMUSG00000032570 Atp2c1 ENSMUST00000176363 ENSMUSP00000135170 TRANSLATION protein_coding stop - 5 230.0 0.0 4.055 0.0 141.6 8.0 -4,-5 0.0023 5 -2.0 MINOR ENSMUSG00000032570 Atp2c1 ENSMUST00000177293 ENSMUSP00000135802 TRANSLATION nonsense_mediated_decay start - 5 786.0 15.0 11.85 0.0 400.7 5.0 -4,-5 0.0181 17 -2.0 MINOR ENSMUSG00000032570 Atp2c1 ENSMUST00000176190 ENSMUSP00000135320 TRANSLATION protein_coding stop - 5 208.0 0.0 3.805 0.0 154.1 6.0 -4,-6 0.0023 4 -2.0 MINOR ENSMUSG00000032570 Atp2c1 ENSMUST00000176651 ENSMUSP00000135732 TRANSLATION protein_coding stop - 5 253.0 0.0 4.935 0.0 185.6 8.0 -4,-7 0.0023 6 -2.0 MINOR ENSMUSG00000032570 Atp2c1 ENSMUST00000190802 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032570 Atp2c1 ENSMUST00000177189 - NO_TRANSLATION retained_intron ENSMUSG00000032570 Atp2c1 ENSMUST00000163879 ENSMUSP00000129617 TRANSLATION protein_coding - CCDS57697.1 1 669.0 13.0 11.185 0.0 317.6 10.0 -4,-7 0.0205 18 6.168 MINOR ENSMUSG00000032570 Atp2c1 ENSMUST00000177000 - NO_TRANSLATION retained_intron ENSMUSG00000032570 Atp2c1 ENSMUST00000176656 - NO_TRANSLATION retained_intron ENSMUSG00000032570 Atp2c1 ENSMUST00000176036 ENSMUSP00000135010 TRANSLATION protein_coding stop - 5 177.0 0.0 3.455 0.0 102.7 8.0 -4,-5 0.0023 3 -2.0 MINOR ENSMUSG00000032570 Atp2c1 ENSMUST00000085133 ENSMUSP00000082220 TRANSLATION protein_coding - CCDS57698.1 1 952.0 15.0 14.305 3.4 473.6 13.0 -4,-7 1.0 20 15.0 PRINCIPAL:2 ENSMUSG00000032570 Atp2c1 ENSMUST00000038118 ENSMUSP00000039103 TRANSLATION protein_coding - CCDS40752.1 1 918.0 15.0 14.305 0.0 473.6 13.0 -4,-5 0.2109 20 14.0 ALTERNATIVE:2 ENSMUSG00000032570 Atp2c1 ENSMUST00000186495 - NO_TRANSLATION retained_intron ENSMUSG00000032570 Atp2c1 ENSMUST00000175697 - NO_TRANSLATION retained_intron ENSMUSG00000032570 Atp2c1 ENSMUST00000112557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032570 Atp2c1 ENSMUST00000176770 ENSMUSP00000134764 TRANSLATION protein_coding - - 5 926.0 15.0 13.705 0.0 405.3 13.0 -4,-7 0.0527 19 11.3 MINOR ENSMUSG00000032570 Atp2c1 ENSMUST00000177334 ENSMUSP00000134902 TRANSLATION protein_coding stop - 5 111.0 0.0 1.825 0.0 68.3 6.0 -4,-5 0.0023 2 -2.0 MINOR ENSMUSG00000032570 Atp2c1 ENSMUST00000112558 ENSMUSP00000108177 TRANSLATION protein_coding - CCDS40752.1 1 918.0 15.0 14.305 0.0 473.6 13.0 -4,-5 0.2109 20 14.0 ALTERNATIVE:2 ENSMUSG00000032570 Atp2c1 ENSMUST00000177074 ENSMUSP00000135646 TRANSLATION protein_coding - - 5 887.0 15.0 14.105 2.0 460.1 12.0 -4,-5 0.3836 20 13.515 MINOR ENSMUSG00000032570 Atp2c1 ENSMUST00000176960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032570 Atp2c1 ENSMUST00000176787 - NO_TRANSLATION retained_intron ENSMUSG00000070305 Mpzl3 ENSMUST00000114663 ENSMUSP00000110311 TRANSLATION nonsense_mediated_decay - - 3 82.0 0.0 1.0 0.0 0.0 0.0 1,-2 0.0054 - -2.0 MINOR ENSMUSG00000070305 Mpzl3 ENSMUST00000114664 ENSMUSP00000110312 TRANSLATION protein_coding - CCDS52781.1 1 237.0 0.0 3.0 1.1 69.4 0.0 1,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000070305 Mpzl3 ENSMUST00000187113 - NO_TRANSLATION retained_intron ENSMUSG00000070305 Mpzl3 ENSMUST00000186268 - NO_TRANSLATION retained_intron ENSMUSG00000070305 Mpzl3 ENSMUST00000093856 - NO_TRANSLATION retained_intron ENSMUSG00000011958 Bnip2 ENSMUST00000154772 ENSMUSP00000117957 TRANSLATION nonsense_mediated_decay - - 3 107.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000011958 Bnip2 ENSMUST00000034754 ENSMUSP00000034754 TRANSLATION protein_coding - CCDS23319.1 1 326.0 0.0 5.8 15.5 222.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000011958 Bnip2 ENSMUST00000165389 ENSMUSP00000133200 TRANSLATION protein_coding - CCDS23318.1 1 314.0 0.0 5.3 13.5 220.1 0.0 -4,-5 0.919 2 14.29 MINOR ENSMUSG00000011958 Bnip2 ENSMUST00000117450 ENSMUSP00000113466 TRANSLATION protein_coding - - 1 348.0 0.0 4.8 0.0 219.1 0.0 -4,-5 0.0055 1 9.786 MINOR ENSMUSG00000011958 Bnip2 ENSMUST00000085393 ENSMUSP00000082513 TRANSLATION protein_coding - CCDS23318.1 1 314.0 0.0 5.3 13.5 220.1 0.0 -4,-5 0.919 2 14.29 MINOR ENSMUSG00000011958 Bnip2 ENSMUST00000143049 - NO_TRANSLATION retained_intron ENSMUSG00000011958 Bnip2 ENSMUST00000137472 ENSMUSP00000115106 TRANSLATION protein_coding start - 3 86.0 0.0 2.566 0.0 53.9 0.0 -3,0 0.0 - -2.0 MINOR ENSMUSG00000011958 Bnip2 ENSMUST00000133307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049028 Or7e177 ENSMUST00000213445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049028 Or7e177 ENSMUST00000215540 ENSMUSP00000153816 TRANSLATION protein_coding - - 5 322.0 0.0 1.0 0.0 177.0 7.0 -4,-6 0.2825 - 8.0 ALTERNATIVE:2 ENSMUSG00000049028 Or7e177 ENSMUST00000075717 ENSMUSP00000075135 TRANSLATION protein_coding - - 2 323.0 0.0 1.0 1.8 177.0 7.0 -4,-5 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000049028 Or7e177 ENSMUST00000212793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049028 Or7e177 ENSMUST00000053919 ENSMUSP00000054778 TRANSLATION protein_coding - CCDS22876.1 - 319.0 0.0 1.0 0.9 177.0 7.0 -4,-7 0.7969 - 8.0 ALTERNATIVE:2 ENSMUSG00000049028 Or7e177 ENSMUST00000216567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049028 Or7e177 ENSMUST00000217193 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034218 Atm ENSMUST00000232179 ENSMUSP00000156344 TRANSLATION protein_coding - CCDS40636.1 - 3066.0 0.0 34.74 0.0 472.3 0.0 -4,-5 1.0 32 8.0 PRINCIPAL:4 ENSMUSG00000034218 Atm ENSMUST00000132403 - NO_TRANSLATION retained_intron ENSMUSG00000034218 Atm ENSMUST00000118282 ENSMUSP00000113388 TRANSLATION protein_coding - - 5 3063.0 0.0 34.74 0.0 475.6 0.0 -4,-5 0.808 32 8.0 ALTERNATIVE:2 ENSMUSG00000034218 Atm ENSMUST00000150244 ENSMUSP00000115394 TRANSLATION protein_coding stop - 5 140.0 0.0 1.5 0.0 73.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034218 Atm ENSMUST00000132249 ENSMUSP00000118199 TRANSLATION protein_coding start/stop - 5 201.0 0.0 5.08 0.0 52.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034218 Atm ENSMUST00000126598 - NO_TRANSLATION retained_intron ENSMUSG00000032254 Kif23 ENSMUST00000214940 - NO_TRANSLATION retained_intron ENSMUSG00000032254 Kif23 ENSMUST00000215965 - NO_TRANSLATION retained_intron ENSMUSG00000032254 Kif23 ENSMUST00000215319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032254 Kif23 ENSMUST00000216746 - NO_TRANSLATION retained_intron ENSMUSG00000032254 Kif23 ENSMUST00000216717 - NO_TRANSLATION retained_intron ENSMUSG00000032254 Kif23 ENSMUST00000215404 - NO_TRANSLATION retained_intron ENSMUSG00000032254 Kif23 ENSMUST00000215743 - NO_TRANSLATION retained_intron ENSMUSG00000032254 Kif23 ENSMUST00000214295 ENSMUSP00000149553 TRANSLATION protein_coding stop - 1 563.0 11.0 6.94 0.0 358.1 0.0 -4,-6 0.0012 5 -2.0 MINOR ENSMUSG00000032254 Kif23 ENSMUST00000213595 - NO_TRANSLATION retained_intron ENSMUSG00000032254 Kif23 ENSMUST00000216812 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032254 Kif23 ENSMUST00000034815 ENSMUSP00000034815 TRANSLATION protein_coding - CCDS40662.1 1 953.0 11.0 8.44 8.9 505.1 0.0 -4,-6 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000032254 Kif23 ENSMUST00000213159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060510 Zfp266 ENSMUST00000068296 ENSMUSP00000066012 TRANSLATION protein_coding - CCDS52732.1 1 604.0 42.0 1.2 0.4 289.9 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000060510 Zfp266 ENSMUST00000213418 ENSMUSP00000150538 TRANSLATION protein_coding stop - 5 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000060510 Zfp266 ENSMUST00000215908 ENSMUSP00000149315 TRANSLATION protein_coding stop - 3 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060510 Zfp266 ENSMUST00000217488 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060510 Zfp266 ENSMUST00000213275 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060510 Zfp266 ENSMUST00000174462 ENSMUSP00000134217 TRANSLATION protein_coding - CCDS52732.1 1 604.0 42.0 1.2 0.4 289.9 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000032415 Ube2cbp ENSMUST00000034986 ENSMUSP00000034986 TRANSLATION protein_coding - CCDS40713.1 1 368.0 4.0 0.0 2.0 249.9 0.0 -4,-7 1.0 3 11.0 PRINCIPAL:1 ENSMUSG00000032415 Ube2cbp ENSMUST00000121189 ENSMUSP00000113549 TRANSLATION nonsense_mediated_decay - - 5 138.0 0.0 0.0 0.0 21.7 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000032355 Mlip ENSMUST00000184006 ENSMUSP00000139002 TRANSLATION protein_coding stop - 5 270.0 0.0 0.0 0.0 212.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032355 Mlip ENSMUST00000034910 ENSMUSP00000034910 TRANSLATION protein_coding - CCDS52861.1 1 269.0 0.0 0.0 0.0 212.4 0.0 -4,-5 0.0302 4 0.0 MINOR ENSMUSG00000032355 Mlip ENSMUST00000183350 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032355 Mlip ENSMUST00000183686 ENSMUSP00000139353 TRANSLATION protein_coding start - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032355 Mlip ENSMUST00000184316 ENSMUSP00000138938 TRANSLATION protein_coding stop - 5 207.0 0.0 0.0 0.0 78.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032355 Mlip ENSMUST00000184138 ENSMUSP00000139188 TRANSLATION protein_coding stop - 3 164.0 0.0 0.0 0.0 78.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032355 Mlip ENSMUST00000184415 ENSMUSP00000139251 TRANSLATION protein_coding - - 5 460.0 0.0 0.75 2.7 384.9 0.0 -4,-5 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000032355 Mlip ENSMUST00000183955 ENSMUSP00000138864 TRANSLATION protein_coding - - 5 967.0 0.0 0.75 0.0 372.5 0.0 -4,-5 0.1129 20 11.256 MINOR ENSMUSG00000032355 Mlip ENSMUST00000184944 - NO_TRANSLATION retained_intron ENSMUSG00000032355 Mlip ENSMUST00000185039 ENSMUSP00000139109 TRANSLATION protein_coding - - 1 279.0 0.0 0.0 0.0 194.4 0.0 -4,-5 0.0 7 0.0 MINOR ENSMUSG00000032355 Mlip ENSMUST00000184322 ENSMUSP00000139055 TRANSLATION protein_coding - - 5 775.0 0.0 0.0 0.1 212.4 0.0 -4,-5 0.015 15 0.0 MINOR ENSMUSG00000032355 Mlip ENSMUST00000185144 ENSMUSP00000139362 TRANSLATION protein_coding - - 5 836.0 0.0 0.75 0.0 372.5 0.0 -4,-5 0.0737 16 11.256 MINOR ENSMUSG00000032355 Mlip ENSMUST00000184848 ENSMUSP00000139242 TRANSLATION protein_coding - - 1 227.0 0.0 0.0 0.0 194.4 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000032355 Mlip ENSMUST00000183636 - NO_TRANSLATION retained_intron ENSMUSG00000032355 Mlip ENSMUST00000184106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064039 Ccr1l1 ENSMUST00000071404 ENSMUSP00000071353 TRANSLATION protein_coding - CCDS23667.1 - 356.0 0.0 1.0 3.3 139.1 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032422 Snx14 ENSMUST00000174806 ENSMUSP00000133533 TRANSLATION protein_coding - - 5 946.0 0.0 3.1355 11.8 301.6 6.0 -4,-2 0.9506 12 11.0 PRINCIPAL:3 ENSMUSG00000032422 Snx14 ENSMUST00000126563 - NO_TRANSLATION retained_intron ENSMUSG00000032422 Snx14 ENSMUST00000140439 - NO_TRANSLATION retained_intron ENSMUSG00000032422 Snx14 ENSMUST00000239462 ENSMUSP00000159306 TRANSLATION protein_coding - CCDS23387.2 - 964.0 0.0 3.1355 1.1 301.6 6.0 -4,-1 0.6154 11 8.027 MINOR ENSMUSG00000032422 Snx14 ENSMUST00000126405 ENSMUSP00000116773 TRANSLATION nonsense_mediated_decay - - 1 183.0 0.0 0.0 0.0 43.2 6.0 -4,-2 0.0034 2 -2.0 MINOR ENSMUSG00000032422 Snx14 ENSMUST00000165315 ENSMUSP00000130116 TRANSLATION protein_coding - - 1 937.0 0.0 3.1355 11.8 301.6 6.0 -4,-2 1.0 11 11.0 ALTERNATIVE:1 ENSMUSG00000032422 Snx14 ENSMUST00000187610 - NO_TRANSLATION retained_intron ENSMUSG00000032422 Snx14 ENSMUST00000173011 ENSMUSP00000133507 TRANSLATION protein_coding - - 5 665.0 0.0 0.198 0.0 216.2 6.0 -4,-2 0.0058 8 1.126 MINOR ENSMUSG00000032422 Snx14 ENSMUST00000173039 ENSMUSP00000133624 TRANSLATION protein_coding - - 5 893.0 0.0 3.1355 1.0 245.1 6.0 -4,-2 0.1562 10 8.0 MINOR ENSMUSG00000032470 Mras ENSMUST00000123771 ENSMUSP00000121307 TRANSLATION protein_coding stop - 5 130.0 23.0 2.5 0.0 136.3 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032470 Mras ENSMUST00000035045 ENSMUSP00000035045 TRANSLATION protein_coding - CCDS23433.1 1 208.0 26.0 3.95 35.8 178.8 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000032470 Mras ENSMUST00000119472 ENSMUSP00000112407 TRANSLATION protein_coding - CCDS23433.1 1 208.0 26.0 3.95 35.8 178.8 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000032470 Mras ENSMUST00000147078 - NO_TRANSLATION retained_intron ENSMUSG00000032470 Mras ENSMUST00000131047 - NO_TRANSLATION retained_intron ENSMUSG00000032470 Mras ENSMUST00000122384 ENSMUSP00000113275 TRANSLATION protein_coding - CCDS23433.1 1 208.0 26.0 3.95 35.8 178.8 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000043587 Pxylp1 ENSMUST00000120101 ENSMUSP00000113210 TRANSLATION protein_coding - CCDS23418.1 1 480.0 7.0 5.3 8.9 96.2 0.0 1,-3 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000043587 Pxylp1 ENSMUST00000141127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043587 Pxylp1 ENSMUST00000154146 ENSMUSP00000114946 TRANSLATION protein_coding stop - 5 85.0 0.0 0.8 0.0 0.0 0.0 1,-3 0.0015 - -2.0 MINOR ENSMUSG00000043587 Pxylp1 ENSMUST00000124923 ENSMUSP00000120377 TRANSLATION protein_coding stop - 3 65.0 0.0 0.3 0.0 0.0 0.0 1,-3 0.0015 - -2.0 MINOR ENSMUSG00000043587 Pxylp1 ENSMUST00000137770 - NO_TRANSLATION retained_intron ENSMUSG00000043587 Pxylp1 ENSMUST00000112951 ENSMUSP00000108574 TRANSLATION protein_coding - CCDS23418.1 1 480.0 7.0 5.3 8.9 96.2 0.0 1,-3 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000043587 Pxylp1 ENSMUST00000185561 - NO_TRANSLATION retained_intron ENSMUSG00000043587 Pxylp1 ENSMUST00000136987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043587 Pxylp1 ENSMUST00000119141 ENSMUSP00000113489 TRANSLATION protein_coding - CCDS23418.1 1 480.0 7.0 5.3 8.9 96.2 0.0 1,-3 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000043587 Pxylp1 ENSMUST00000121077 ENSMUSP00000113059 TRANSLATION protein_coding stop - 3 180.0 3.0 3.13 0.0 23.9 0.0 1,-3 0.0017 1 -2.0 MINOR ENSMUSG00000043587 Pxylp1 ENSMUST00000078478 ENSMUSP00000077571 TRANSLATION protein_coding - CCDS23418.1 1 480.0 7.0 5.3 8.9 96.2 0.0 1,-3 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000043587 Pxylp1 ENSMUST00000126411 ENSMUSP00000121537 TRANSLATION protein_coding stop - 5 190.0 4.0 4.3 0.0 58.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000043587 Pxylp1 ENSMUST00000135834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059741 Myl3 ENSMUST00000153142 - NO_TRANSLATION retained_intron ENSMUSG00000059741 Myl3 ENSMUST00000124267 ENSMUSP00000142424 TRANSLATION protein_coding - - 5 127.0 11.0 3.16 0.0 0.0 0.0 -4,-5 0.0055 7 10.338 MINOR ENSMUSG00000059741 Myl3 ENSMUST00000200011 ENSMUSP00000142530 TRANSLATION protein_coding stop - 5 184.0 4.0 3.33 0.0 0.0 0.0 -4,-5 0.0045 10 -2.0 MINOR ENSMUSG00000059741 Myl3 ENSMUST00000136695 ENSMUSP00000142791 TRANSLATION protein_coding - - 3 127.0 11.0 3.16 0.0 0.0 0.0 -4,-5 0.0055 7 10.338 MINOR ENSMUSG00000059741 Myl3 ENSMUST00000079784 ENSMUSP00000078715 TRANSLATION protein_coding - CCDS23571.1 1 204.0 11.0 3.99 3.1 0.0 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000049526 Tmem202 ENSMUST00000216061 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049526 Tmem202 ENSMUST00000214580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049526 Tmem202 ENSMUST00000055345 ENSMUSP00000053782 TRANSLATION protein_coding - CCDS23249.1 1 275.0 0.0 0.666 0.1 27.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032578 Cish ENSMUST00000167072 ENSMUSP00000129941 TRANSLATION protein_coding stop - 5 102.0 0.0 1.0 0.0 23.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000032578 Cish ENSMUST00000165664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032578 Cish ENSMUST00000171568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032578 Cish ENSMUST00000085102 ENSMUSP00000082183 TRANSLATION protein_coding - CCDS40761.1 1 257.0 0.0 2.38 7.5 86.3 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000032578 Cish ENSMUST00000168260 ENSMUSP00000127523 TRANSLATION protein_coding - - 1 62.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000032350 Gclc ENSMUST00000216848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032350 Gclc ENSMUST00000216315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032350 Gclc ENSMUST00000034905 ENSMUSP00000034905 TRANSLATION protein_coding - CCDS23354.1 1 637.0 28.0 6.198 16.9 606.4 0.0 -4,-7 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000037705 Tecta ENSMUST00000160940 ENSMUSP00000125370 TRANSLATION protein_coding - CCDS85660.1 1 2150.0 0.0 6.317 8.7 1160.7 0.0 0,-4 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000037705 Tecta ENSMUST00000042190 ENSMUSP00000040262 TRANSLATION protein_coding - CCDS23087.1 1 2155.0 0.0 6.317 6.7 1160.7 0.0 0,-4 0.932 - 10.22 ALTERNATIVE:1 ENSMUSG00000037705 Tecta ENSMUST00000159603 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074448 Pate9 ENSMUST00000098900 ENSMUSP00000096499 TRANSLATION protein_coding - CCDS52766.1 1 101.0 0.0 2.45 0.0 0.0 0.0 2,-3 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000032494 Tdgf1 ENSMUST00000197460 ENSMUSP00000143394 TRANSLATION nonsense_mediated_decay - - 1 64.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0031 - -2.0 MINOR ENSMUSG00000032494 Tdgf1 ENSMUST00000199782 ENSMUSP00000143669 TRANSLATION protein_coding stop - 3 90.0 4.0 1.75 0.0 43.9 0.0 1,-2 0.0129 - -2.0 MINOR ENSMUSG00000032494 Tdgf1 ENSMUST00000035075 ENSMUSP00000035075 TRANSLATION protein_coding - CCDS40783.1 1 171.0 4.0 2.08 0.0 58.4 0.0 1,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032494 Tdgf1 ENSMUST00000199196 ENSMUSP00000142397 TRANSLATION protein_coding stop - 5 60.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000059867 Or10d4b ENSMUST00000216584 ENSMUSP00000148949 TRANSLATION protein_coding - - 3 314.0 0.0 1.0 5.8 164.3 7.0 -4,-7 0.8282 - 10.0 ALTERNATIVE:1 ENSMUSG00000059867 Or10d4b ENSMUST00000077060 ENSMUSP00000076315 TRANSLATION protein_coding - CCDS23054.1 - 316.0 0.0 1.0 5.8 164.3 7.0 -4,-7 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000059867 Or10d4b ENSMUST00000215616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043923 Cenatac ENSMUST00000215402 - NO_TRANSLATION retained_intron ENSMUSG00000043923 Cenatac ENSMUST00000216134 - NO_TRANSLATION retained_intron ENSMUSG00000043923 Cenatac ENSMUST00000215111 - NO_TRANSLATION retained_intron ENSMUSG00000043923 Cenatac ENSMUST00000214702 ENSMUSP00000151118 TRANSLATION nonsense_mediated_decay - - 5 194.0 4.0 3.8 0.1 181.0 0.0 -4,0 0.0099 - -2.0 MINOR ENSMUSG00000043923 Cenatac ENSMUST00000214370 - NO_TRANSLATION retained_intron ENSMUSG00000043923 Cenatac ENSMUST00000214748 ENSMUSP00000148979 TRANSLATION protein_coding start - 3 194.0 4.0 3.8 0.1 181.0 0.0 -4,0 0.0099 - -2.0 MINOR ENSMUSG00000043923 Cenatac ENSMUST00000213813 ENSMUSP00000148874 TRANSLATION protein_coding - - 1 185.0 4.0 3.8 0.0 181.0 0.0 -4,0 0.003 - 9.502 MINOR ENSMUSG00000043923 Cenatac ENSMUST00000217351 ENSMUSP00000149682 TRANSLATION protein_coding - - 3 194.0 4.0 3.8 0.1 181.0 0.0 -4,0 0.0099 - 9.502 MINOR ENSMUSG00000043923 Cenatac ENSMUST00000216572 ENSMUSP00000149229 TRANSLATION protein_coding stop - 5 161.0 4.0 3.8 0.0 163.0 0.0 -4,0 0.003 - -2.0 MINOR ENSMUSG00000043923 Cenatac ENSMUST00000217270 ENSMUSP00000150949 TRANSLATION protein_coding - - 1 194.0 4.0 3.8 0.1 181.0 0.0 -4,0 0.0099 - 9.502 MINOR ENSMUSG00000043923 Cenatac ENSMUST00000214494 ENSMUSP00000151113 TRANSLATION nonsense_mediated_decay - - 5 194.0 4.0 3.8 0.1 181.0 0.0 -4,0 0.0099 - -2.0 MINOR ENSMUSG00000043923 Cenatac ENSMUST00000053286 ENSMUSP00000053216 TRANSLATION protein_coding - CCDS23110.1 1 332.0 4.0 4.05 6.2 318.2 0.0 -4,0 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000036138 Acaa1a ENSMUST00000039784 ENSMUSP00000042351 TRANSLATION protein_coding - CCDS23613.1 1 424.0 17.0 10.45 20.0 458.3 0.0 -4,0 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000036138 Acaa1a ENSMUST00000176007 - NO_TRANSLATION retained_intron ENSMUSG00000036138 Acaa1a ENSMUST00000176796 - NO_TRANSLATION retained_intron ENSMUSG00000036138 Acaa1a ENSMUST00000175719 - NO_TRANSLATION retained_intron ENSMUSG00000036138 Acaa1a ENSMUST00000176397 ENSMUSP00000135191 TRANSLATION protein_coding - - 5 331.0 11.0 8.45 1.0 244.5 0.0 -4,0 0.0086 6 3.996 MINOR ENSMUSG00000036138 Acaa1a ENSMUST00000177463 ENSMUSP00000135310 TRANSLATION protein_coding stop - 5 199.0 2.0 5.21 0.0 160.4 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000036138 Acaa1a ENSMUST00000176546 ENSMUSP00000134981 TRANSLATION nonsense_mediated_decay start - 5 114.0 2.0 3.212 0.0 111.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000036138 Acaa1a ENSMUST00000176351 ENSMUSP00000134926 TRANSLATION protein_coding stop - 3 98.0 0.0 2.13 0.0 47.5 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000036138 Acaa1a ENSMUST00000175743 ENSMUSP00000135439 TRANSLATION protein_coding - - 5 373.0 12.0 7.87 0.1 313.8 0.0 -4,0 0.0306 9 3.504 MINOR ENSMUSG00000036138 Acaa1a ENSMUST00000175859 - NO_TRANSLATION retained_intron ENSMUSG00000038775 Vill ENSMUST00000141185 ENSMUSP00000116546 TRANSLATION protein_coding - - 1 475.0 0.0 6.33 0.0 119.6 0.0 -4,-5 0.0 8 0.0 MINOR ENSMUSG00000038775 Vill ENSMUST00000131647 ENSMUSP00000118375 TRANSLATION protein_coding stop - 3 85.0 0.0 1.3 0.0 21.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038775 Vill ENSMUST00000153454 - NO_TRANSLATION retained_intron ENSMUSG00000038775 Vill ENSMUST00000153630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038775 Vill ENSMUST00000126251 ENSMUSP00000116262 TRANSLATION protein_coding - - 1 392.0 0.0 5.4 0.0 86.0 0.0 -4,-6 0.0 7 0.0 MINOR ENSMUSG00000038775 Vill ENSMUST00000051386 ENSMUSP00000061731 TRANSLATION protein_coding - CCDS52962.1 1 859.0 5.0 13.06 4.2 250.7 0.0 -4,-5 1.0 17 19.0 PRINCIPAL:1 ENSMUSG00000038775 Vill ENSMUST00000136561 ENSMUSP00000123393 TRANSLATION protein_coding stop - 2 140.0 0.0 1.8 0.0 33.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038775 Vill ENSMUST00000151638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038775 Vill ENSMUST00000135872 - NO_TRANSLATION retained_intron ENSMUSG00000038775 Vill ENSMUST00000074734 ENSMUSP00000074294 TRANSLATION protein_coding - CCDS23606.1 1 775.0 5.0 12.06 0.0 218.5 0.0 -4,-5 0.0698 15 13.07 MINOR ENSMUSG00000032298 Neil1 ENSMUST00000190245 ENSMUSP00000139917 TRANSLATION protein_coding - CCDS23217.1 1 389.0 0.0 4.705 6.4 148.4 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000032298 Neil1 ENSMUST00000034842 ENSMUSP00000034842 TRANSLATION protein_coding - CCDS23217.1 1 389.0 0.0 4.705 6.4 148.4 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000032298 Neil1 ENSMUST00000186410 ENSMUSP00000141048 TRANSLATION protein_coding - CCDS23217.1 1 389.0 0.0 4.705 6.4 148.4 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000039313 Minar1 ENSMUST00000191465 ENSMUSP00000140942 TRANSLATION nonsense_mediated_decay - - 5 855.0 0.0 0.0 0.0 95.7 0.0 -4,-6 0.0104 9 -2.0 MINOR ENSMUSG00000039313 Minar1 ENSMUST00000044491 ENSMUSP00000046111 TRANSLATION protein_coding - CCDS23395.1 1 917.0 0.0 0.0 16.6 232.2 0.0 -4,-6 1.0 9 10.0 PRINCIPAL:1 ENSMUSG00000094992 Fbxw25 ENSMUST00000163839 ENSMUSP00000128652 TRANSLATION protein_coding - - 1 466.0 0.0 1.932 0.1 39.8 0.0 -4,-7 0.7535 - 12.0 PRINCIPAL:1 ENSMUSG00000047822 Angptl8 ENSMUST00000058777 ENSMUSP00000058951 TRANSLATION protein_coding - CCDS40556.1 1 198.0 0.0 3.33 3.2 0.0 0.0 3,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000009927 Rps25 ENSMUST00000080300 ENSMUSP00000079180 TRANSLATION protein_coding - CCDS40600.1 1 125.0 0.0 2.0 30.4 167.1 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000009927 Rps25 ENSMUST00000216867 ENSMUSP00000149401 TRANSLATION protein_coding - CCDS40600.1 1 125.0 0.0 2.0 30.4 167.1 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000009927 Rps25 ENSMUST00000217231 - NO_TRANSLATION retained_intron ENSMUSG00000009927 Rps25 ENSMUST00000213116 - NO_TRANSLATION retained_intron ENSMUSG00000009927 Rps25 ENSMUST00000215610 - NO_TRANSLATION retained_intron ENSMUSG00000009927 Rps25 ENSMUST00000216076 ENSMUSP00000148977 TRANSLATION protein_coding - - 3 93.0 0.0 2.0 0.0 145.9 0.0 -4,-5 0.0136 5 10.728 MINOR ENSMUSG00000009927 Rps25 ENSMUST00000217620 - NO_TRANSLATION retained_intron ENSMUSG00000038119 Cdon ENSMUST00000042842 ENSMUSP00000045547 TRANSLATION protein_coding - CCDS22964.1 1 1250.0 0.0 10.81 0.4 330.5 1.0 2,-3 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000038119 Cdon ENSMUST00000119129 ENSMUSP00000113977 TRANSLATION protein_coding - CCDS22964.1 5 1250.0 0.0 10.81 0.4 330.5 1.0 2,-3 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000038119 Cdon ENSMUST00000154652 ENSMUSP00000117499 TRANSLATION protein_coding stop - 1 670.0 0.0 7.09 0.0 244.0 0.0 2,-3 0.005 2 -2.0 MINOR ENSMUSG00000038119 Cdon ENSMUST00000151682 ENSMUSP00000119206 TRANSLATION protein_coding stop - 5 178.0 0.0 2.17 0.0 42.3 0.0 2,-3 0.0011 - -2.0 MINOR ENSMUSG00000038119 Cdon ENSMUST00000127264 ENSMUSP00000115216 TRANSLATION protein_coding start/stop - 3 218.0 0.0 2.24 0.0 84.6 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000038119 Cdon ENSMUST00000137200 ENSMUSP00000116553 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 0.09 0.0 0.0 0.0 2,-3 0.0025 - -2.0 MINOR ENSMUSG00000050503 Fbxl22 ENSMUST00000056890 ENSMUSP00000060137 TRANSLATION protein_coding - CCDS23304.1 1 236.0 0.0 1.8 0.1 0.0 0.0 -4,-7 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000045087 S1pr5 ENSMUST00000122088 ENSMUSP00000113843 TRANSLATION protein_coding - CCDS22898.1 2 400.0 0.0 0.5 1.5 119.8 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000048429 Timm29 ENSMUST00000062125 ENSMUSP00000058283 TRANSLATION protein_coding - CCDS22908.1 1 266.0 0.0 1.2 6.2 200.0 0.0 -4,-6 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000095903 Or8g53 ENSMUST00000075928 ENSMUSP00000096472 TRANSLATION protein_coding - CCDS23060.1 - 314.0 0.0 1.0 2.8 174.4 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000095903 Or8g53 ENSMUST00000216458 ENSMUSP00000148969 TRANSLATION protein_coding - CCDS23060.1 5 314.0 0.0 1.0 2.8 174.4 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032171 Pin1 ENSMUST00000034689 ENSMUSP00000034689 TRANSLATION protein_coding - CCDS22882.1 1 165.0 7.0 3.75 25.6 56.6 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000063380 Or8g28 ENSMUST00000216698 ENSMUSP00000151086 TRANSLATION protein_coding - - 5 316.0 0.0 1.0 4.2 171.0 5.0 -4,-7 0.8382 - 10.0 ALTERNATIVE:2 ENSMUSG00000063380 Or8g28 ENSMUST00000076903 ENSMUSP00000076169 TRANSLATION protein_coding - CCDS23042.1 - 319.0 0.0 1.0 4.2 171.0 5.0 -4,-7 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000090738 Pate7 ENSMUST00000171898 ENSMUSP00000129553 TRANSLATION protein_coding - CCDS52759.1 5 109.0 0.0 2.2 0.1 0.0 0.0 4,-1 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000056267 Cep70 ENSMUST00000189371 - NO_TRANSLATION retained_intron ENSMUSG00000056267 Cep70 ENSMUST00000093795 ENSMUSP00000091312 TRANSLATION protein_coding - CCDS40738.1 1 616.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.9596 3 1.0 PRINCIPAL:2 ENSMUSG00000056267 Cep70 ENSMUST00000191014 ENSMUSP00000139896 TRANSLATION nonsense_mediated_decay - - 3 116.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 1 -2.0 MINOR ENSMUSG00000056267 Cep70 ENSMUST00000188515 - NO_TRANSLATION retained_intron ENSMUSG00000056267 Cep70 ENSMUST00000190078 ENSMUSP00000141041 TRANSLATION protein_coding stop - 3 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 1 -2.0 MINOR ENSMUSG00000056267 Cep70 ENSMUST00000187883 - NO_TRANSLATION retained_intron ENSMUSG00000056267 Cep70 ENSMUST00000191335 ENSMUSP00000139816 TRANSLATION protein_coding - - 1 578.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0806 3 0.0 ALTERNATIVE:2 ENSMUSG00000056267 Cep70 ENSMUST00000185799 ENSMUSP00000139458 TRANSLATION protein_coding stop - 1 160.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0216 2 -2.0 MINOR ENSMUSG00000056267 Cep70 ENSMUST00000190715 ENSMUSP00000140377 TRANSLATION protein_coding - - 1 179.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0216 2 0.0 ALTERNATIVE:2 ENSMUSG00000032382 Snx1 ENSMUST00000132841 - NO_TRANSLATION retained_intron ENSMUSG00000032382 Snx1 ENSMUST00000034946 ENSMUSP00000034946 TRANSLATION protein_coding - CCDS52839.1 1 521.0 0.0 9.75 10.3 374.6 0.0 -4,-6 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000032382 Snx1 ENSMUST00000145449 - NO_TRANSLATION retained_intron ENSMUSG00000032382 Snx1 ENSMUST00000137542 ENSMUSP00000120746 TRANSLATION protein_coding stop - 5 192.0 0.0 3.0 0.0 59.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000032382 Snx1 ENSMUST00000146893 - NO_TRANSLATION retained_intron ENSMUSG00000032382 Snx1 ENSMUST00000143148 - NO_TRANSLATION retained_intron ENSMUSG00000032382 Snx1 ENSMUST00000139872 - NO_TRANSLATION retained_intron ENSMUSG00000032271 Nnmt ENSMUST00000119426 ENSMUSP00000112381 TRANSLATION protein_coding - CCDS80991.1 1 157.0 20.0 2.5 0.3 188.4 0.0 -4,-5 0.0038 1 3.834 MINOR ENSMUSG00000032271 Nnmt ENSMUST00000136813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032271 Nnmt ENSMUST00000128076 - NO_TRANSLATION retained_intron ENSMUSG00000032271 Nnmt ENSMUST00000034808 ENSMUSP00000034808 TRANSLATION protein_coding - CCDS23157.1 1 264.0 24.0 5.25 7.6 332.9 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000032271 Nnmt ENSMUST00000126109 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036986 Pml ENSMUST00000148301 ENSMUSP00000120620 TRANSLATION nonsense_mediated_decay - - 3 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036986 Pml ENSMUST00000124982 ENSMUSP00000121380 TRANSLATION protein_coding stop - 3 118.0 11.0 0.6 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000036986 Pml ENSMUST00000114136 ENSMUSP00000109771 TRANSLATION protein_coding - CCDS23240.2 1 839.0 13.0 1.265 0.0 476.8 0.0 -4,-5 0.2638 19 13.5 MINOR ENSMUSG00000036986 Pml ENSMUST00000153820 ENSMUSP00000118955 TRANSLATION protein_coding - - 1 641.0 13.0 1.1 0.0 580.9 0.0 -4,-5 0.0757 19 13.22 ALTERNATIVE:2 ENSMUSG00000036986 Pml ENSMUST00000126690 ENSMUSP00000116787 TRANSLATION protein_coding start - 5 578.0 13.0 1.1 0.0 476.8 0.0 -4,-6 0.0094 16 -2.0 MINOR ENSMUSG00000036986 Pml ENSMUST00000124063 ENSMUSP00000118232 TRANSLATION protein_coding start - 5 124.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000036986 Pml ENSMUST00000148628 - NO_TRANSLATION retained_intron ENSMUSG00000036986 Pml ENSMUST00000135310 ENSMUSP00000122854 TRANSLATION protein_coding - CCDS81007.1 1 632.0 13.0 1.1 0.0 580.9 0.0 -4,-5 0.1637 19 13.22 ALTERNATIVE:2 ENSMUSG00000036986 Pml ENSMUST00000085673 ENSMUSP00000082816 TRANSLATION protein_coding - CCDS23239.1 1 885.0 13.0 1.265 0.0 580.9 0.0 -4,-5 1.0 22 14.0 PRINCIPAL:2 ENSMUSG00000036986 Pml ENSMUST00000130459 ENSMUSP00000121330 TRANSLATION nonsense_mediated_decay start - 2 54.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036986 Pml ENSMUST00000154572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036986 Pml ENSMUST00000138775 - NO_TRANSLATION retained_intron ENSMUSG00000061393 Acvr2b ENSMUST00000217621 - NO_TRANSLATION retained_intron ENSMUSG00000061393 Acvr2b ENSMUST00000213431 - NO_TRANSLATION retained_intron ENSMUSG00000061393 Acvr2b ENSMUST00000215746 ENSMUSP00000150566 TRANSLATION protein_coding - - 1 512.0 18.0 9.0 24.9 145.0 1.0 1,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000061393 Acvr2b ENSMUST00000213389 - NO_TRANSLATION retained_intron ENSMUSG00000061393 Acvr2b ENSMUST00000165044 ENSMUSP00000126108 TRANSLATION protein_coding - CCDS23615.1 2 536.0 18.0 9.0 0.1 145.0 1.0 1,-2 0.303 - 18.0 MINOR ENSMUSG00000061393 Acvr2b ENSMUST00000035093 ENSMUSP00000035093 TRANSLATION protein_coding - - 5 528.0 18.0 9.0 0.1 145.0 1.0 1,-2 0.2062 - 18.0 MINOR ENSMUSG00000034584 Exph5 ENSMUST00000132410 - NO_TRANSLATION retained_intron ENSMUSG00000034584 Exph5 ENSMUST00000051014 ENSMUSP00000062632 TRANSLATION protein_coding - CCDS23181.1 1 1960.0 0.0 2.0 0.0 0.0 0.0 -4,-5 1.0 19 6.0 PRINCIPAL:1 ENSMUSG00000034584 Exph5 ENSMUST00000139096 - NO_TRANSLATION retained_intron ENSMUSG00000032215 Rsl24d1 ENSMUST00000113505 ENSMUSP00000109133 TRANSLATION nonsense_mediated_decay - - 3 40.0 2.0 0.75 0.0 49.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032215 Rsl24d1 ENSMUST00000165177 ENSMUSP00000126553 TRANSLATION protein_coding - - 3 164.0 3.0 4.07 0.0 58.8 0.0 -4,-7 0.0322 - 10.59 MINOR ENSMUSG00000032215 Rsl24d1 ENSMUST00000034738 ENSMUSP00000034738 TRANSLATION protein_coding - CCDS40688.1 1 163.0 4.0 4.58 36.2 115.3 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000032215 Rsl24d1 ENSMUST00000169399 ENSMUSP00000129528 TRANSLATION protein_coding - - 3 71.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - 0.84 MINOR ENSMUSG00000032557 Uba5 ENSMUST00000140768 ENSMUSP00000118734 TRANSLATION nonsense_mediated_decay - - 5 130.0 3.0 1.85 0.0 30.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032557 Uba5 ENSMUST00000144195 ENSMUSP00000118535 TRANSLATION nonsense_mediated_decay - - 5 99.0 3.0 1.85 0.0 27.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032557 Uba5 ENSMUST00000191568 - NO_TRANSLATION retained_intron ENSMUSG00000032557 Uba5 ENSMUST00000035166 ENSMUSP00000035166 TRANSLATION protein_coding - CCDS23457.1 1 403.0 22.0 7.43 16.5 157.5 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000032557 Uba5 ENSMUST00000214222 ENSMUSP00000149909 TRANSLATION nonsense_mediated_decay start - 5 117.0 3.0 1.85 0.0 30.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000066368 Actl11 ENSMUST00000085073 ENSMUSP00000082150 TRANSLATION protein_coding - CCDS23510.1 - 1207.0 25.0 0.5 0.0 279.3 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000070283 Ndufaf3 ENSMUST00000193242 - NO_TRANSLATION retained_intron ENSMUSG00000070283 Ndufaf3 ENSMUST00000074208 ENSMUSP00000073832 TRANSLATION protein_coding - CCDS23531.1 1 185.0 0.0 4.0 7.8 113.4 0.0 -4,0 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000070283 Ndufaf3 ENSMUST00000194381 ENSMUSP00000141291 TRANSLATION protein_coding start - 3 75.0 0.0 0.625 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000070283 Ndufaf3 ENSMUST00000194666 - NO_TRANSLATION retained_intron ENSMUSG00000032310 Cyp1a2 ENSMUST00000215792 - NO_TRANSLATION retained_intron ENSMUSG00000032310 Cyp1a2 ENSMUST00000034860 ENSMUSP00000034860 TRANSLATION protein_coding - CCDS23229.1 1 513.0 30.0 5.75 7.8 349.2 0.0 1,-3 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000047237 Fbxw21 ENSMUST00000198076 ENSMUSP00000143095 TRANSLATION protein_coding - - 1 432.0 0.0 2.66 0.0 46.8 0.0 -4,-7 0.7495 - 8.0 PRINCIPAL:2 ENSMUSG00000047237 Fbxw21 ENSMUST00000199540 ENSMUSP00000143200 TRANSLATION protein_coding stop - 3 117.0 0.0 1.52 0.0 46.8 0.0 -4,-7 0.0309 - -2.0 MINOR ENSMUSG00000047237 Fbxw21 ENSMUST00000054925 ENSMUSP00000056358 TRANSLATION protein_coding - CCDS23547.1 1 468.0 0.0 2.66 0.1 46.8 0.0 -4,-7 0.3443 - 8.0 ALTERNATIVE:2 ENSMUSG00000047237 Fbxw21 ENSMUST00000197401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032239 Rp9 ENSMUST00000034763 ENSMUSP00000034763 TRANSLATION protein_coding - CCDS40564.1 1 213.0 4.0 4.98 0.1 0.0 0.0 -4,-7 0.9629 4 10.0 PRINCIPAL:2 ENSMUSG00000032239 Rp9 ENSMUST00000214005 - NO_TRANSLATION retained_intron ENSMUSG00000032239 Rp9 ENSMUST00000215715 ENSMUSP00000150271 TRANSLATION protein_coding - - 1 156.0 4.0 4.58 0.0 0.0 0.0 -4,-7 0.0127 4 9.202 ALTERNATIVE:2 ENSMUSG00000032239 Rp9 ENSMUST00000217370 - NO_TRANSLATION retained_intron ENSMUSG00000032239 Rp9 ENSMUST00000216973 ENSMUSP00000150554 TRANSLATION protein_coding - - 3 128.0 4.0 2.65 0.0 0.0 0.0 -4,-7 0.0098 1 5.338 MINOR ENSMUSG00000066233 Tmem42 ENSMUST00000214077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066233 Tmem42 ENSMUST00000213514 ENSMUSP00000149571 TRANSLATION protein_coding - - 3 129.0 0.0 1.6 0.0 0.0 0.0 -3,-6 0.0077 - 3.69 MINOR ENSMUSG00000066233 Tmem42 ENSMUST00000084733 ENSMUSP00000081784 TRANSLATION protein_coding - CCDS23652.1 1 157.0 0.0 2.6 8.5 0.0 0.0 -3,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000066233 Tmem42 ENSMUST00000214785 ENSMUSP00000149811 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 0.6 0.0 0.0 0.0 -3,-6 0.0043 - -2.0 MINOR ENSMUSG00000031937 Vstm5 ENSMUST00000034413 ENSMUSP00000034413 TRANSLATION protein_coding - CCDS22833.1 1 199.0 0.0 2.5 9.3 22.8 0.0 -1,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000032590 Apeh ENSMUST00000193254 ENSMUSP00000141856 TRANSLATION protein_coding - CCDS52923.1 1 732.0 4.0 8.93 23.6 125.8 0.0 -4,-5 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000032590 Apeh ENSMUST00000194014 - NO_TRANSLATION retained_intron ENSMUSG00000032590 Apeh ENSMUST00000191754 - NO_TRANSLATION retained_intron ENSMUSG00000032590 Apeh ENSMUST00000194083 - NO_TRANSLATION retained_intron ENSMUSG00000032590 Apeh ENSMUST00000081309 ENSMUSP00000080058 TRANSLATION protein_coding start - 1 716.0 4.0 8.63 0.0 125.5 0.0 -4,-6 0.0709 20 -2.0 MINOR ENSMUSG00000032590 Apeh ENSMUST00000192278 - NO_TRANSLATION retained_intron ENSMUSG00000032590 Apeh ENSMUST00000192916 - NO_TRANSLATION retained_intron ENSMUSG00000032590 Apeh ENSMUST00000191985 ENSMUSP00000142150 TRANSLATION protein_coding stop - 2 204.0 0.0 0.72 0.0 0.0 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000032590 Apeh ENSMUST00000194915 - NO_TRANSLATION retained_intron ENSMUSG00000042106 Inka1 ENSMUST00000175914 ENSMUSP00000134980 TRANSLATION protein_coding stop - 5 163.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000042106 Inka1 ENSMUST00000048568 ENSMUSP00000040433 TRANSLATION protein_coding - CCDS52919.1 1 282.0 0.0 0.2 7.3 93.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000039962 Or8b1 ENSMUST00000045493 ENSMUSP00000039040 TRANSLATION protein_coding - CCDS23013.1 - 311.0 0.0 1.0 10.4 169.4 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039962 Or8b1 ENSMUST00000214344 ENSMUSP00000151008 TRANSLATION protein_coding - CCDS23013.1 3 311.0 0.0 1.0 10.4 169.4 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032607 Amt ENSMUST00000160675 - NO_TRANSLATION retained_intron ENSMUSG00000032607 Amt ENSMUST00000162568 - NO_TRANSLATION retained_intron ENSMUSG00000032607 Amt ENSMUST00000160025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032607 Amt ENSMUST00000035230 ENSMUSP00000035230 TRANSLATION protein_coding - CCDS23519.1 1 403.0 12.0 7.5 8.5 358.5 0.0 -2,2 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000032514 Ttc21a ENSMUST00000035100 ENSMUSP00000035100 TRANSLATION protein_coding - CCDS40805.1 1 1314.0 0.0 3.175 11.9 91.8 0.0 -4,-5 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000032514 Ttc21a ENSMUST00000161967 - NO_TRANSLATION retained_intron ENSMUSG00000032514 Ttc21a ENSMUST00000159128 - NO_TRANSLATION retained_intron ENSMUSG00000032514 Ttc21a ENSMUST00000160790 - NO_TRANSLATION retained_intron ENSMUSG00000034910 Pygo1 ENSMUST00000038489 ENSMUSP00000044368 TRANSLATION protein_coding - CCDS23332.1 1 417.0 8.0 0.2 9.5 29.2 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000032264 Zw10 ENSMUST00000215706 - NO_TRANSLATION retained_intron ENSMUSG00000032264 Zw10 ENSMUST00000213787 ENSMUSP00000150032 TRANSLATION nonsense_mediated_decay start - 1 187.0 0.0 0.0 0.0 249.3 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000032264 Zw10 ENSMUST00000034803 ENSMUSP00000034803 TRANSLATION protein_coding - CCDS23161.1 1 779.0 0.0 0.0 13.1 817.9 0.0 -4,-5 1.0 18 10.0 PRINCIPAL:1 ENSMUSG00000022245 Skor1 ENSMUST00000119146 ENSMUSP00000113924 TRANSLATION protein_coding - CCDS52829.1 1 936.0 4.0 0.4 0.0 237.7 0.0 -4,-5 0.3829 - 12.0 ALTERNATIVE:2 ENSMUSG00000022245 Skor1 ENSMUST00000116613 ENSMUSP00000112312 TRANSLATION protein_coding - CCDS52828.1 1 925.0 4.0 0.4 0.4 237.7 0.0 -4,-5 0.4548 - 12.0 ALTERNATIVE:2 ENSMUSG00000022245 Skor1 ENSMUST00000055281 ENSMUSP00000055037 TRANSLATION protein_coding - CCDS23268.1 1 964.0 4.0 0.4 2.5 237.7 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:2 ENSMUSG00000048391 Or7g25 ENSMUST00000214267 ENSMUSP00000151203 TRANSLATION protein_coding - CCDS22853.1 5 313.0 0.0 1.0 1.5 173.3 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000048391 Or7g25 ENSMUST00000061365 ENSMUSP00000051027 TRANSLATION protein_coding - CCDS22853.1 - 313.0 0.0 1.0 1.5 173.3 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000048391 Or7g25 ENSMUST00000214019 ENSMUSP00000150008 TRANSLATION protein_coding - CCDS22853.1 5 313.0 0.0 1.0 1.5 173.3 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000054871 Tmem158 ENSMUST00000068140 ENSMUSP00000069161 TRANSLATION protein_coding - CCDS23658.1 - 286.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.9724 - 0.0 PRINCIPAL:1 ENSMUSG00000031988 Vps26b ENSMUST00000213917 - NO_TRANSLATION retained_intron ENSMUSG00000031988 Vps26b ENSMUST00000034470 ENSMUSP00000034470 TRANSLATION protein_coding - CCDS22938.1 1 336.0 0.0 5.5 29.5 441.6 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000032513 Gorasp1 ENSMUST00000213409 - NO_TRANSLATION retained_intron ENSMUSG00000032513 Gorasp1 ENSMUST00000214118 - NO_TRANSLATION retained_intron ENSMUSG00000032513 Gorasp1 ENSMUST00000035099 ENSMUSP00000035099 TRANSLATION protein_coding - CCDS23619.1 1 446.0 3.0 4.7 0.1 191.4 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000006676 Usp19 ENSMUST00000193678 ENSMUSP00000141738 TRANSLATION protein_coding - CCDS81075.1 1 1322.0 12.0 13.65 6.7 536.6 0.0 -4,-6 0.9492 31 15.714 ALTERNATIVE:1 ENSMUSG00000006676 Usp19 ENSMUST00000195763 - NO_TRANSLATION retained_intron ENSMUSG00000006676 Usp19 ENSMUST00000085044 ENSMUSP00000082119 TRANSLATION protein_coding - CCDS52924.1 1 1323.0 12.0 13.65 6.7 549.3 0.0 -4,-6 1.0 31 15.714 ALTERNATIVE:1 ENSMUSG00000006676 Usp19 ENSMUST00000194863 ENSMUSP00000141826 TRANSLATION protein_coding start/stop - 3 295.0 8.0 2.55 0.0 33.6 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000006676 Usp19 ENSMUST00000006854 ENSMUSP00000006854 TRANSLATION protein_coding - CCDS23529.1 1 1360.0 12.0 13.65 6.0 549.3 1.0 -4,-6 0.9091 32 15.468 PRINCIPAL:3 ENSMUSG00000006676 Usp19 ENSMUST00000166103 ENSMUSP00000128573 TRANSLATION protein_coding - CCDS52925.1 1 1299.0 12.0 12.9 0.0 538.1 0.0 -4,-6 0.1754 31 12.5 MINOR ENSMUSG00000006676 Usp19 ENSMUST00000193975 - NO_TRANSLATION retained_intron ENSMUSG00000006676 Usp19 ENSMUST00000247867 ENSMUSP00000159537 TRANSLATION protein_coding - - - 1390.0 12.0 13.65 0.0 549.3 1.0 -4,-7 0.2361 32 13.714 MINOR ENSMUSG00000006676 Usp19 ENSMUST00000194225 - NO_TRANSLATION retained_intron ENSMUSG00000006676 Usp19 ENSMUST00000193412 - NO_TRANSLATION retained_intron ENSMUSG00000006676 Usp19 ENSMUST00000193183 - NO_TRANSLATION retained_intron ENSMUSG00000006676 Usp19 ENSMUST00000193571 - NO_TRANSLATION retained_intron ENSMUSG00000006676 Usp19 ENSMUST00000192854 - NO_TRANSLATION retained_intron ENSMUSG00000006676 Usp19 ENSMUST00000178075 ENSMUSP00000135930 TRANSLATION protein_coding - CCDS57702.1 1 1324.0 12.0 13.65 6.7 549.3 0.0 -4,-6 0.9996 31 15.714 ALTERNATIVE:1 ENSMUSG00000006676 Usp19 ENSMUST00000193558 ENSMUSP00000142137 TRANSLATION protein_coding start/stop - 1 128.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000006676 Usp19 ENSMUST00000194499 - NO_TRANSLATION retained_intron ENSMUSG00000006676 Usp19 ENSMUST00000194171 ENSMUSP00000141628 TRANSLATION protein_coding start - 1 991.0 12.0 10.65 0.0 495.6 1.0 -4,-2 0.0266 19 -2.0 MINOR ENSMUSG00000032611 1700102P08Rik ENSMUST00000035234 ENSMUSP00000035234 TRANSLATION protein_coding - CCDS23524.1 1 252.0 0.0 0.0 4.8 446.5 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000032611 1700102P08Rik ENSMUST00000192995 ENSMUSP00000141566 TRANSLATION protein_coding - - 3 166.0 0.0 0.0 0.0 261.2 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000044798 Or8b56 ENSMUST00000219798 ENSMUSP00000151652 TRANSLATION protein_coding - CCDS23028.1 - 317.0 0.0 1.0 5.0 157.9 5.0 -4,-6 0.9334 - 13.155 MINOR ENSMUSG00000044798 Or8b56 ENSMUST00000213619 ENSMUSP00000151135 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 11.4 157.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044798 Or8b56 ENSMUST00000051238 ENSMUSP00000062073 TRANSLATION protein_coding - - - 311.0 0.0 1.0 11.4 157.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044798 Or8b56 ENSMUST00000213550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094970 Or8g26 ENSMUST00000071617 ENSMUSP00000071545 TRANSLATION protein_coding - CCDS23039.1 3 314.0 0.0 1.0 11.4 184.8 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094970 Or8g26 ENSMUST00000213830 ENSMUSP00000150222 TRANSLATION protein_coding - - 3 311.0 0.0 1.0 0.0 184.8 7.0 -4,-7 0.1437 - 12.0 MINOR ENSMUSG00000094970 Or8g26 ENSMUST00000213176 ENSMUSP00000149086 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 0.0 184.8 7.0 -4,-7 0.1437 - 12.0 MINOR ENSMUSG00000094970 Or8g26 ENSMUST00000215770 ENSMUSP00000148896 TRANSLATION protein_coding - - 2 311.0 0.0 1.0 0.0 184.8 7.0 -4,-7 0.1437 - 12.0 MINOR ENSMUSG00000094970 Or8g26 ENSMUST00000213507 ENSMUSP00000149205 TRANSLATION nonsense_mediated_decay - - 5 311.0 0.0 1.0 0.0 184.8 7.0 -4,-7 0.1437 - -2.0 MINOR ENSMUSG00000039952 Dag1 ENSMUST00000191899 ENSMUSP00000142109 TRANSLATION protein_coding - CCDS23518.1 1 893.0 0.0 1.4 8.5 518.3 1.0 3,-1 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000039952 Dag1 ENSMUST00000193701 - NO_TRANSLATION retained_intron ENSMUSG00000039952 Dag1 ENSMUST00000194698 ENSMUSP00000141921 TRANSLATION protein_coding stop - 2 25.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000039952 Dag1 ENSMUST00000171412 ENSMUSP00000130626 TRANSLATION protein_coding - CCDS23518.1 1 893.0 0.0 1.4 8.5 518.3 1.0 3,-1 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000039952 Dag1 ENSMUST00000166905 ENSMUSP00000128531 TRANSLATION protein_coding - CCDS23518.1 1 893.0 0.0 1.4 8.5 518.3 1.0 3,-1 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000039952 Dag1 ENSMUST00000080435 ENSMUSP00000079294 TRANSLATION protein_coding - CCDS23518.1 1 893.0 0.0 1.4 8.5 518.3 1.0 3,-1 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000039952 Dag1 ENSMUST00000195429 ENSMUSP00000141385 TRANSLATION protein_coding stop - 2 38.0 0.0 0.0 0.0 0.0 0.0 3,-1 0.0011 - -2.0 MINOR ENSMUSG00000032207 Lipc ENSMUST00000216798 ENSMUSP00000149185 TRANSLATION protein_coding - - 1 425.0 7.0 5.25 0.0 483.3 0.0 -4,-7 0.0169 2 14.298 MINOR ENSMUSG00000032207 Lipc ENSMUST00000215814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032207 Lipc ENSMUST00000214995 ENSMUSP00000149638 TRANSLATION protein_coding stop - 3 107.0 0.0 0.73 0.0 47.3 0.0 2,-2 0.0013 - -2.0 MINOR ENSMUSG00000032207 Lipc ENSMUST00000034731 ENSMUSP00000034731 TRANSLATION protein_coding - CCDS23324.1 1 510.0 7.0 5.65 0.0 531.7 0.0 2,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000047562 Mmp10 ENSMUST00000034488 ENSMUSP00000034488 TRANSLATION protein_coding - CCDS22807.1 1 476.0 29.0 8.04 9.9 416.7 0.0 4,-1 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000039716 Dock3 ENSMUST00000165562 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039716 Dock3 ENSMUST00000170193 - NO_TRANSLATION retained_intron ENSMUSG00000039716 Dock3 ENSMUST00000169164 - NO_TRANSLATION retained_intron ENSMUSG00000039716 Dock3 ENSMUST00000167053 - NO_TRANSLATION retained_intron ENSMUSG00000039716 Dock3 ENSMUST00000168759 ENSMUSP00000131410 TRANSLATION protein_coding start/stop - 5 241.0 0.0 4.631 0.0 157.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000039716 Dock3 ENSMUST00000165182 - NO_TRANSLATION retained_intron ENSMUSG00000039716 Dock3 ENSMUST00000171095 ENSMUSP00000127059 TRANSLATION protein_coding start - 1 552.0 0.0 3.15 0.0 184.5 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000039716 Dock3 ENSMUST00000044532 ENSMUSP00000047652 TRANSLATION protein_coding - CCDS40760.1 2 2030.0 0.0 18.566 5.2 1043.6 0.0 -4,-5 1.0 39 14.0 PRINCIPAL:1 ENSMUSG00000039716 Dock3 ENSMUST00000166759 - NO_TRANSLATION retained_intron ENSMUSG00000039716 Dock3 ENSMUST00000165075 ENSMUSP00000130873 TRANSLATION protein_coding start/stop - 3 241.0 0.0 3.822 0.0 0.0 0.0 -2,-4 0.0 2 -2.0 MINOR ENSMUSG00000039716 Dock3 ENSMUST00000166152 ENSMUSP00000131701 TRANSLATION protein_coding start/stop - 5 87.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000123937 ENSMUSP00000114613 TRANSLATION nonsense_mediated_decay - - 3 122.0 0.0 1.83 0.0 0.0 8.0 -4,-6 0.0038 - -2.0 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000129862 ENSMUSP00000119360 TRANSLATION nonsense_mediated_decay start - 5 65.0 0.0 0.844 0.0 0.0 4.0 3,-2 0.003 - -2.0 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000138622 ENSMUSP00000119750 TRANSLATION nonsense_mediated_decay - - 1 122.0 0.0 1.83 0.0 0.0 8.0 -4,-6 0.0038 - -2.0 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000150679 ENSMUSP00000116526 TRANSLATION nonsense_mediated_decay - - 5 128.0 0.0 1.995 0.0 0.0 8.0 -4,-7 0.0038 - -2.0 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000238520 ENSMUSP00000158842 TRANSLATION protein_coding - - - 332.0 7.0 6.39 9.2 125.0 12.0 -4,-7 0.2612 2 17.652 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000152396 ENSMUSP00000116222 TRANSLATION nonsense_mediated_decay - - 5 154.0 0.0 1.83 0.0 0.0 8.0 -4,-7 0.0038 - -2.0 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000155778 ENSMUSP00000119416 TRANSLATION nonsense_mediated_decay - - 1 104.0 0.0 1.83 0.0 0.0 8.0 -4,-7 0.0038 - -2.0 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000130717 ENSMUSP00000121712 TRANSLATION protein_coding stop - 3 83.0 0.0 1.33 0.0 0.0 4.0 -4,-7 0.0038 - -2.0 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000147563 ENSMUSP00000117392 TRANSLATION protein_coding - CCDS23654.1 1 299.0 7.0 6.99 33.9 127.4 12.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000025786 Zdhhc3 ENSMUST00000026892 ENSMUSP00000026892 TRANSLATION nonsense_mediated_decay - - 1 128.0 0.0 1.995 0.0 0.0 8.0 -4,-7 0.0038 - -2.0 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000140497 ENSMUSP00000122604 TRANSLATION nonsense_mediated_decay - - 1 112.0 0.0 2.245 0.0 0.0 8.0 -4,-6 0.0038 - -2.0 MINOR ENSMUSG00000025786 Zdhhc3 ENSMUST00000129151 - NO_TRANSLATION retained_intron ENSMUSG00000054978 Kbtbd13 ENSMUST00000068307 ENSMUSP00000136872 TRANSLATION protein_coding - CCDS57682.1 - 458.0 0.0 0.16 5.5 79.4 0.0 -4,-6 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000050621 Rps27rt ENSMUST00000053150 ENSMUSP00000060523 TRANSLATION protein_coding - CCDS52952.1 - 84.0 4.0 1.0 34.9 104.7 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000063225 Or8b52 ENSMUST00000076542 ENSMUSP00000075857 TRANSLATION protein_coding - CCDS23021.1 - 309.0 0.0 1.0 11.4 143.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004100 Ppan ENSMUST00000147780 - NO_TRANSLATION retained_intron ENSMUSG00000004100 Ppan ENSMUST00000135608 - NO_TRANSLATION retained_intron ENSMUSG00000004100 Ppan ENSMUST00000145231 - NO_TRANSLATION retained_intron ENSMUSG00000004100 Ppan ENSMUST00000157047 - NO_TRANSLATION retained_intron ENSMUSG00000004100 Ppan ENSMUST00000004203 ENSMUSP00000004203 TRANSLATION protein_coding - CCDS22887.1 1 470.0 0.0 2.484 0.1 154.8 0.0 -4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000004100 Ppan ENSMUST00000214331 ENSMUSP00000149658 TRANSLATION nonsense_mediated_decay - - 5 193.0 0.0 1.884 0.0 100.9 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000004100 Ppan ENSMUST00000153227 - NO_TRANSLATION retained_intron ENSMUSG00000040146 Rgl3 ENSMUST00000214089 - NO_TRANSLATION retained_intron ENSMUSG00000040146 Rgl3 ENSMUST00000045726 ENSMUSP00000035726 TRANSLATION protein_coding - CCDS22916.1 1 709.0 0.0 8.41 2.4 280.3 0.0 -4,-5 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000040146 Rgl3 ENSMUST00000214026 ENSMUSP00000148965 TRANSLATION nonsense_mediated_decay - CCDS22916.1 1 709.0 0.0 8.41 2.4 280.3 0.0 -4,-5 1.0 17 -2.0 MINOR ENSMUSG00000040146 Rgl3 ENSMUST00000215851 ENSMUSP00000150195 TRANSLATION nonsense_mediated_decay - - 2 87.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040146 Rgl3 ENSMUST00000214713 - NO_TRANSLATION retained_intron ENSMUSG00000040146 Rgl3 ENSMUST00000213558 - NO_TRANSLATION retained_intron ENSMUSG00000040146 Rgl3 ENSMUST00000213130 - NO_TRANSLATION retained_intron ENSMUSG00000032340 Neo1 ENSMUST00000217545 - NO_TRANSLATION retained_intron ENSMUSG00000032340 Neo1 ENSMUST00000215026 - NO_TRANSLATION retained_intron ENSMUSG00000032340 Neo1 ENSMUST00000216964 ENSMUSP00000149424 TRANSLATION protein_coding start/stop - 5 405.0 0.0 8.1 0.0 228.6 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000032340 Neo1 ENSMUST00000215165 - NO_TRANSLATION retained_intron ENSMUSG00000032340 Neo1 ENSMUST00000068664 ENSMUSP00000063656 TRANSLATION protein_coding - CCDS23246.1 1 1492.0 0.0 18.755 1.5 888.7 2.0 -1,-3 1.0 30 13.0 PRINCIPAL:1 ENSMUSG00000032340 Neo1 ENSMUST00000214547 ENSMUSP00000150600 TRANSLATION protein_coding - - 1 1465.0 0.0 18.34 0.4 888.7 2.0 -1,-3 0.4294 28 11.172 MINOR ENSMUSG00000039115 Itga9 ENSMUST00000124360 ENSMUSP00000122417 TRANSLATION protein_coding - CCDS52961.1 1 450.0 0.0 1.9975 0.0 201.2 1.0 -4,-5 0.0119 6 0.0 MINOR ENSMUSG00000039115 Itga9 ENSMUST00000149150 ENSMUSP00000122408 TRANSLATION protein_coding start - 3 175.0 0.0 0.5795 0.0 75.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039115 Itga9 ENSMUST00000125021 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039115 Itga9 ENSMUST00000155437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039115 Itga9 ENSMUST00000044165 ENSMUSP00000044227 TRANSLATION protein_coding - CCDS23604.1 1 1036.0 15.0 13.3475 4.5 378.1 1.0 2,-3 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000039115 Itga9 ENSMUST00000124422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033491 Prss35 ENSMUST00000036426 ENSMUSP00000035271 TRANSLATION protein_coding - CCDS40714.1 1 409.0 2.0 0.0 14.9 36.5 0.0 2,-3 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000045204 Or7g20 ENSMUST00000213018 ENSMUSP00000148416 TRANSLATION protein_coding - CCDS22851.1 5 311.0 0.0 1.0 8.4 160.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045204 Or7g20 ENSMUST00000059315 ENSMUSP00000052610 TRANSLATION protein_coding - CCDS22851.1 - 311.0 0.0 1.0 8.4 160.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031129 Slc9a9 ENSMUST00000162870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031129 Slc9a9 ENSMUST00000162329 - NO_TRANSLATION retained_intron ENSMUSG00000031129 Slc9a9 ENSMUST00000033463 ENSMUSP00000033463 TRANSLATION protein_coding - CCDS40726.1 1 644.0 0.0 8.05 8.0 291.5 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000095448 Or7e168 ENSMUST00000212540 ENSMUSP00000148298 TRANSLATION protein_coding - CCDS22864.1 3 309.0 0.0 1.0 8.3 181.7 4.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095448 Or7e168 ENSMUST00000086480 ENSMUSP00000083669 TRANSLATION protein_coding - CCDS22864.1 - 309.0 0.0 1.0 8.3 181.7 4.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095448 Or7e168 ENSMUST00000217280 ENSMUSP00000151076 TRANSLATION protein_coding - CCDS22864.1 5 309.0 0.0 1.0 8.3 181.7 4.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091537 Tma7 ENSMUST00000193868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091537 Tma7 ENSMUST00000167504 ENSMUSP00000133026 TRANSLATION protein_coding - CCDS52930.1 1 64.0 0.0 0.0 0.0 103.3 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000091537 Tma7 ENSMUST00000192801 ENSMUSP00000142209 TRANSLATION protein_coding - - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000091537 Tma7 ENSMUST00000192442 - NO_TRANSLATION retained_intron ENSMUSG00000032338 Hcn4 ENSMUST00000034889 ENSMUSP00000034889 TRANSLATION protein_coding - CCDS52815.1 1 1201.0 22.0 6.2 4.5 215.5 0.0 -4,-6 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000050555 Hyls1 ENSMUST00000132547 - NO_TRANSLATION retained_intron ENSMUSG00000050555 Hyls1 ENSMUST00000115110 ENSMUSP00000110762 TRANSLATION protein_coding - CCDS52754.1 1 314.0 0.0 0.0 7.9 131.8 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000032376 Usp3 ENSMUST00000139952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032376 Usp3 ENSMUST00000150840 - NO_TRANSLATION retained_intron ENSMUSG00000032376 Usp3 ENSMUST00000154476 - NO_TRANSLATION retained_intron ENSMUSG00000032376 Usp3 ENSMUST00000139547 ENSMUSP00000115620 TRANSLATION nonsense_mediated_decay - - 1 49.0 1.0 0.1 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032376 Usp3 ENSMUST00000034940 - NO_TRANSLATION retained_intron ENSMUSG00000032376 Usp3 ENSMUST00000124519 - NO_TRANSLATION retained_intron ENSMUSG00000032376 Usp3 ENSMUST00000124694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032376 Usp3 ENSMUST00000127569 ENSMUSP00000122199 TRANSLATION protein_coding - CCDS23305.1 1 520.0 15.0 8.004 21.1 276.9 0.0 -4,-5 1.0 9 21.334 PRINCIPAL:1 ENSMUSG00000032376 Usp3 ENSMUST00000098613 ENSMUSP00000096213 TRANSLATION protein_coding - CCDS81025.1 1 482.0 16.0 7.804 0.0 225.4 0.0 -4,-5 0.0461 8 14.508 MINOR ENSMUSG00000032376 Usp3 ENSMUST00000132255 - NO_TRANSLATION retained_intron ENSMUSG00000032376 Usp3 ENSMUST00000174387 ENSMUSP00000134472 TRANSLATION protein_coding - - 5 476.0 10.0 7.872 1.0 228.5 0.0 -4,-5 0.054 9 10.83 MINOR ENSMUSG00000031990 Jam3 ENSMUST00000034472 ENSMUSP00000034472 TRANSLATION protein_coding - CCDS22939.1 1 310.0 0.0 5.948 4.8 97.1 0.0 0,0 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000031990 Jam3 ENSMUST00000213170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031990 Jam3 ENSMUST00000213682 - NO_TRANSLATION retained_intron ENSMUSG00000031990 Jam3 ENSMUST00000167074 - NO_TRANSLATION retained_intron ENSMUSG00000031990 Jam3 ENSMUST00000215446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032238 Rora ENSMUST00000140351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032238 Rora ENSMUST00000034766 ENSMUSP00000034766 TRANSLATION protein_coding - CCDS23314.1 1 523.0 8.0 7.75 0.4 198.2 0.0 -4,-5 0.1908 3 18.0 MINOR ENSMUSG00000032238 Rora ENSMUST00000174296 ENSMUSP00000134291 TRANSLATION nonsense_mediated_decay start - 5 62.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032238 Rora ENSMUST00000143507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032238 Rora ENSMUST00000113624 ENSMUSP00000109254 TRANSLATION protein_coding - CCDS72268.1 1 467.0 8.0 7.75 29.2 198.2 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000032238 Rora ENSMUST00000132355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096794 Or8b1c ENSMUST00000051111 ENSMUSP00000057998 TRANSLATION protein_coding - CCDS23012.1 - 310.0 0.0 1.0 11.4 170.3 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096794 Or8b1c ENSMUST00000214377 ENSMUSP00000150357 TRANSLATION protein_coding - CCDS23012.1 5 310.0 0.0 1.0 11.4 170.3 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032383 Ppib ENSMUST00000213785 - NO_TRANSLATION retained_intron ENSMUSG00000032383 Ppib ENSMUST00000034947 ENSMUSP00000034947 TRANSLATION protein_coding - CCDS23301.1 1 216.0 8.0 4.5 27.7 167.6 0.0 0,-4 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000041986 Elmod1 ENSMUST00000216880 - NO_TRANSLATION retained_intron ENSMUSG00000041986 Elmod1 ENSMUST00000215313 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041986 Elmod1 ENSMUST00000048409 ENSMUSP00000046191 TRANSLATION protein_coding - CCDS57678.1 1 326.0 0.0 6.93 27.9 158.3 0.0 -3,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000041986 Elmod1 ENSMUST00000213111 - NO_TRANSLATION retained_intron ENSMUSG00000032528 Vipr1 ENSMUST00000035115 ENSMUSP00000035115 TRANSLATION protein_coding - CCDS23633.1 1 459.0 0.0 9.115 7.3 388.3 0.0 2,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032528 Vipr1 ENSMUST00000149959 - NO_TRANSLATION retained_intron ENSMUSG00000032528 Vipr1 ENSMUST00000139189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032528 Vipr1 ENSMUST00000129394 - NO_TRANSLATION retained_intron ENSMUSG00000032528 Vipr1 ENSMUST00000213272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009828 Cilk1 ENSMUST00000142776 - NO_TRANSLATION retained_intron ENSMUSG00000009828 Cilk1 ENSMUST00000125615 ENSMUSP00000115522 TRANSLATION protein_coding stop - 3 28.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000009828 Cilk1 ENSMUST00000118869 ENSMUSP00000112961 TRANSLATION protein_coding - CCDS40697.1 1 629.0 18.0 5.2 14.7 267.1 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000009828 Cilk1 ENSMUST00000044551 ENSMUSP00000048234 TRANSLATION protein_coding - CCDS40697.1 1 629.0 18.0 5.2 14.7 267.1 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000009828 Cilk1 ENSMUST00000149821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009828 Cilk1 ENSMUST00000117330 ENSMUSP00000113655 TRANSLATION protein_coding - - 2 539.0 18.0 5.2 0.0 267.1 0.0 -4,-5 0.0421 3 18.0 MINOR ENSMUSG00000009828 Cilk1 ENSMUST00000009972 ENSMUSP00000009972 TRANSLATION protein_coding - - 1 100.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0 - 0.0 MINOR ENSMUSG00000009828 Cilk1 ENSMUST00000142402 - NO_TRANSLATION retained_intron ENSMUSG00000052336 Cx3cr1 ENSMUST00000064165 ENSMUSP00000063986 TRANSLATION protein_coding - CCDS40806.1 1 354.0 0.0 0.6 12.2 166.2 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052336 Cx3cr1 ENSMUST00000215016 ENSMUSP00000150463 TRANSLATION protein_coding - CCDS40806.1 5 354.0 0.0 0.6 12.2 166.2 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032532 Cck ENSMUST00000215228 ENSMUSP00000149679 TRANSLATION protein_coding - CCDS23631.1 1 115.0 0.0 0.0 10.3 134.4 0.0 4,-1 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000032532 Cck ENSMUST00000213106 ENSMUSP00000149410 TRANSLATION protein_coding stop - 3 85.0 0.0 0.0 0.0 55.1 0.0 4,-1 0.002 - -2.0 MINOR ENSMUSG00000032532 Cck ENSMUST00000216138 ENSMUSP00000150080 TRANSLATION protein_coding - - 1 134.0 0.0 0.0 0.0 43.8 0.0 4,-1 0.0036 - 0.564 MINOR ENSMUSG00000032532 Cck ENSMUST00000216176 ENSMUSP00000149163 TRANSLATION protein_coding start - 3 42.0 0.0 0.0 0.0 0.0 0.0 1,-4 0.0 - -2.0 MINOR ENSMUSG00000032532 Cck ENSMUST00000035120 ENSMUSP00000035120 TRANSLATION protein_coding - CCDS23631.1 1 115.0 0.0 0.0 10.3 134.4 0.0 4,-1 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000032532 Cck ENSMUST00000217581 ENSMUSP00000150557 TRANSLATION nonsense_mediated_decay start - 5 68.0 0.0 0.0 0.0 37.1 0.0 1,-3 0.0 - -2.0 MINOR ENSMUSG00000058515 Or8d1b ENSMUST00000075680 ENSMUSP00000075102 TRANSLATION protein_coding - CCDS23033.1 - 308.0 0.0 1.0 11.4 170.9 4.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058515 Or8d1b ENSMUST00000216238 ENSMUSP00000149292 TRANSLATION protein_coding - CCDS23033.1 2 308.0 0.0 1.0 11.4 170.9 4.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074397 Foxr1 ENSMUST00000215980 ENSMUSP00000150402 TRANSLATION protein_coding stop - 3 159.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074397 Foxr1 ENSMUST00000098837 ENSMUSP00000096436 TRANSLATION protein_coding - CCDS23111.1 1 223.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.4868 - 3.336 PRINCIPAL:1 ENSMUSG00000074397 Foxr1 ENSMUST00000215375 ENSMUSP00000149277 TRANSLATION protein_coding stop - 5 263.0 0.0 1.44 0.0 85.0 0.0 -4,-5 0.0726 - -2.0 MINOR ENSMUSG00000032352 Lrrc1 ENSMUST00000183572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032352 Lrrc1 ENSMUST00000183734 ENSMUSP00000138912 TRANSLATION protein_coding - - 1 349.0 0.0 8.7 0.0 129.3 0.0 -4,-7 0.0088 5 6.0 MINOR ENSMUSG00000032352 Lrrc1 ENSMUST00000183467 ENSMUSP00000138934 TRANSLATION nonsense_mediated_decay start - 5 63.0 0.0 1.33 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032352 Lrrc1 ENSMUST00000184811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032352 Lrrc1 ENSMUST00000183873 ENSMUSP00000139226 TRANSLATION protein_coding - CCDS72282.1 1 524.0 0.0 11.79 28.5 129.3 0.0 -4,-7 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000032352 Lrrc1 ENSMUST00000184099 - NO_TRANSLATION retained_intron ENSMUSG00000032352 Lrrc1 ENSMUST00000113421 ENSMUSP00000109048 TRANSLATION protein_coding - CCDS52862.1 1 479.0 0.0 10.988 0.0 93.8 0.0 -4,-2 0.0199 9 8.268 MINOR ENSMUSG00000032352 Lrrc1 ENSMUST00000183980 - NO_TRANSLATION retained_intron ENSMUSG00000066750 Or8b12c ENSMUST00000215287 ENSMUSP00000149930 TRANSLATION protein_coding - CCDS22988.1 5 310.0 0.0 1.0 11.4 160.7 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066750 Or8b12c ENSMUST00000213368 ENSMUSP00000150696 TRANSLATION nonsense_mediated_decay - CCDS22988.1 5 310.0 0.0 1.0 11.4 160.7 4.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000066750 Or8b12c ENSMUST00000086064 ENSMUSP00000083231 TRANSLATION protein_coding - CCDS22988.1 - 310.0 0.0 1.0 11.4 160.7 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047193 Dync2h1 ENSMUST00000147193 ENSMUSP00000116679 TRANSLATION protein_coding - - 5 4313.0 48.0 78.9755 6.9 1877.9 0.0 -4,-5 0.8607 78 15.8 ALTERNATIVE:1 ENSMUSG00000047193 Dync2h1 ENSMUST00000214191 ENSMUSP00000149482 TRANSLATION nonsense_mediated_decay start - 5 426.0 19.0 7.83 0.0 102.6 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000047193 Dync2h1 ENSMUST00000139671 ENSMUSP00000116242 TRANSLATION nonsense_mediated_decay start - 1 385.0 15.0 6.998 0.0 92.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000047193 Dync2h1 ENSMUST00000140466 ENSMUSP00000120007 TRANSLATION protein_coding - CCDS40528.1 5 4306.0 48.0 78.8105 6.9 1886.0 0.0 -4,-5 1.0 78 15.67 PRINCIPAL:4 ENSMUSG00000047193 Dync2h1 ENSMUST00000048417 ENSMUSP00000046733 TRANSLATION protein_coding - CCDS40528.1 1 4306.0 48.0 78.8105 6.9 1886.0 0.0 -4,-5 1.0 78 15.67 PRINCIPAL:4 ENSMUSG00000047193 Dync2h1 ENSMUST00000147056 - NO_TRANSLATION retained_intron ENSMUSG00000047193 Dync2h1 ENSMUST00000216097 ENSMUSP00000149764 TRANSLATION protein_coding start/stop - 5 596.0 31.0 11.33 0.0 151.5 0.0 -4,-5 0.0011 9 -2.0 MINOR ENSMUSG00000047193 Dync2h1 ENSMUST00000139115 ENSMUSP00000120322 TRANSLATION protein_coding - - 1 916.0 0.0 14.5 0.0 130.9 0.0 -4,-5 0.0045 14 0.0 MINOR ENSMUSG00000047193 Dync2h1 ENSMUST00000152934 - NO_TRANSLATION retained_intron ENSMUSG00000032394 Igdcc3 ENSMUST00000217135 - NO_TRANSLATION retained_intron ENSMUSG00000032394 Igdcc3 ENSMUST00000034961 ENSMUSP00000034961 TRANSLATION protein_coding - CCDS52835.1 1 793.0 0.0 5.66 0.0 299.1 1.0 -1,1 0.7391 - 8.0 ALTERNATIVE:2 ENSMUSG00000032394 Igdcc3 ENSMUST00000217371 ENSMUSP00000149084 TRANSLATION protein_coding - - 1 813.0 0.0 5.66 0.0 299.1 1.0 -1,1 0.8587 - 8.0 PRINCIPAL:4 ENSMUSG00000066415 Msl2 ENSMUST00000085177 ENSMUSP00000082270 TRANSLATION protein_coding - CCDS85717.1 1 577.0 8.0 1.75 16.0 178.9 0.0 -4,-6 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000066415 Msl2 ENSMUST00000189616 ENSMUSP00000139396 TRANSLATION protein_coding - - 5 100.0 2.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - 4.926 MINOR ENSMUSG00000060461 Dppa5a ENSMUST00000071991 ENSMUSP00000071881 TRANSLATION protein_coding - CCDS23360.1 1 118.0 0.0 2.5 5.1 104.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032068 Plet1 ENSMUST00000114474 ENSMUSP00000110118 TRANSLATION protein_coding - CCDS40619.1 1 237.0 0.0 2.3 0.0 0.0 0.0 2,-3 0.4771 3 6.0 ALTERNATIVE:2 ENSMUSG00000032068 Plet1 ENSMUST00000188047 ENSMUSP00000139422 TRANSLATION protein_coding - - 1 194.0 0.0 2.3 0.0 0.0 0.0 2,-3 0.741 3 6.0 PRINCIPAL:2 ENSMUSG00000032013 Trim29 ENSMUST00000217418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032013 Trim29 ENSMUST00000217067 - NO_TRANSLATION retained_intron ENSMUSG00000032013 Trim29 ENSMUST00000034511 ENSMUSP00000034511 TRANSLATION protein_coding - CCDS52775.1 1 587.0 15.0 3.6 8.8 39.2 0.0 -4,-5 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000046785 Epm2aip1 ENSMUST00000135807 ENSMUSP00000120245 TRANSLATION protein_coding - CCDS40785.1 2 606.0 4.0 0.0 10.1 0.0 0.0 -4,-5 1.0 17 7.0 PRINCIPAL:1 ENSMUSG00000046785 Epm2aip1 ENSMUST00000060711 ENSMUSP00000052904 TRANSLATION protein_coding - CCDS40785.1 - 606.0 4.0 0.0 10.1 0.0 0.0 -4,-5 1.0 17 7.0 PRINCIPAL:1 ENSMUSG00000046785 Epm2aip1 ENSMUST00000200053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033350 Chst2 ENSMUST00000036267 ENSMUSP00000040775 TRANSLATION protein_coding - CCDS52888.1 1 530.0 0.0 0.25 7.4 85.4 0.0 -4,-1 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000091996 Smim35 ENSMUST00000171277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091996 Smim35 ENSMUST00000164650 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091996 Smim35 ENSMUST00000171799 ENSMUSP00000132091 TRANSLATION protein_coding - CCDS52782.1 1 85.0 0.0 1.0 3.0 0.0 0.0 0,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000050627 Gpd1l ENSMUST00000146623 ENSMUSP00000117509 TRANSLATION protein_coding - CCDS23598.1 1 351.0 28.0 8.25 34.0 346.1 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000050627 Gpd1l ENSMUST00000084853 ENSMUSP00000081913 TRANSLATION protein_coding - - 1 320.0 28.0 7.25 0.0 317.6 0.0 -4,-7 0.0068 13 14.292 MINOR ENSMUSG00000050627 Gpd1l ENSMUST00000129305 ENSMUSP00000123212 TRANSLATION protein_coding - - 1 117.0 9.0 3.0 0.0 99.2 0.0 -4,-7 0.0 2 0.0 MINOR ENSMUSG00000050627 Gpd1l ENSMUST00000146266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034898 Filip1 ENSMUST00000217264 ENSMUSP00000149142 TRANSLATION protein_coding stop - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000034898 Filip1 ENSMUST00000093811 ENSMUSP00000091329 TRANSLATION protein_coding - CCDS40704.1 1 1214.0 0.0 1.0 12.0 207.2 0.0 -4,-6 1.0 19 11.0 PRINCIPAL:3 ENSMUSG00000034898 Filip1 ENSMUST00000172973 ENSMUSP00000134427 TRANSLATION protein_coding stop - 1 225.0 0.0 1.0 0.0 180.4 0.0 -4,-6 0.0226 3 -2.0 MINOR ENSMUSG00000034898 Filip1 ENSMUST00000239133 ENSMUSP00000158921 TRANSLATION protein_coding - - - 1178.0 0.0 1.0 10.8 207.2 0.0 -4,-6 0.8141 18 10.673 ALTERNATIVE:1 ENSMUSG00000034898 Filip1 ENSMUST00000172740 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032370 Lactb ENSMUST00000215172 ENSMUSP00000151155 TRANSLATION protein_coding - - 1 356.0 2.0 1.12 0.1 107.2 0.0 -4,-1 0.0024 6 7.37 MINOR ENSMUSG00000032370 Lactb ENSMUST00000034929 ENSMUSP00000034929 TRANSLATION protein_coding - CCDS40674.1 1 551.0 4.0 1.87 3.0 177.6 0.0 -4,-1 1.0 13 17.0 PRINCIPAL:1 ENSMUSG00000032251 Irak1bp1 ENSMUST00000113245 ENSMUSP00000108871 TRANSLATION protein_coding - CCDS23372.1 1 259.0 0.0 0.0 0.0 85.5 0.0 -4,-7 0.2477 2 0.0 ALTERNATIVE:2 ENSMUSG00000032251 Irak1bp1 ENSMUST00000034783 ENSMUSP00000034783 TRANSLATION protein_coding - CCDS52871.1 1 237.0 0.0 0.0 1.1 63.5 0.0 -4,-6 0.5917 1 1.0 PRINCIPAL:2 ENSMUSG00000095527 Or8b101 ENSMUST00000211851 ENSMUSP00000148476 TRANSLATION protein_coding - - 2 309.0 0.0 1.0 11.5 164.9 5.0 -4,-6 0.9768 - 15.0 PRINCIPAL:1 ENSMUSG00000095527 Or8b101 ENSMUST00000075228 ENSMUSP00000074713 TRANSLATION protein_coding - CCDS22997.1 - 314.0 0.0 1.0 6.5 164.9 5.0 -4,-7 1.0 - 13.572 MINOR ENSMUSG00000054792 Klhl18 ENSMUST00000199700 - NO_TRANSLATION retained_intron ENSMUSG00000054792 Klhl18 ENSMUST00000198327 - NO_TRANSLATION retained_intron ENSMUSG00000054792 Klhl18 ENSMUST00000197336 ENSMUSP00000143717 TRANSLATION nonsense_mediated_decay start - 1 197.0 0.0 3.58 0.0 111.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054792 Klhl18 ENSMUST00000200256 ENSMUSP00000142820 TRANSLATION protein_coding start/stop - 3 216.0 0.0 4.58 0.0 164.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054792 Klhl18 ENSMUST00000068025 ENSMUSP00000069674 TRANSLATION protein_coding - CCDS23567.1 1 574.0 0.0 11.91 14.0 543.7 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000054792 Klhl18 ENSMUST00000198400 ENSMUSP00000143384 TRANSLATION protein_coding - - 1 509.0 0.0 10.16 9.2 486.1 0.0 -4,-5 0.4793 2 6.426 MINOR ENSMUSG00000054792 Klhl18 ENSMUST00000198164 ENSMUSP00000143634 TRANSLATION protein_coding - - 1 579.0 0.0 11.91 14.0 543.8 0.0 -4,-5 0.8245 2 11.6 ALTERNATIVE:1 ENSMUSG00000064145 Arih2 ENSMUST00000193552 ENSMUSP00000142102 TRANSLATION nonsense_mediated_decay start - 3 51.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000064145 Arih2 ENSMUST00000193923 - NO_TRANSLATION retained_intron ENSMUSG00000064145 Arih2 ENSMUST00000193197 ENSMUSP00000141911 TRANSLATION protein_coding stop - 5 79.0 8.0 1.78 0.0 29.7 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000064145 Arih2 ENSMUST00000013338 ENSMUSP00000013338 TRANSLATION protein_coding - CCDS23534.1 1 492.0 24.0 7.133 23.4 81.4 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000064145 Arih2 ENSMUST00000192686 - NO_TRANSLATION retained_intron ENSMUSG00000064145 Arih2 ENSMUST00000194073 ENSMUSP00000141364 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000064145 Arih2 ENSMUST00000193643 ENSMUSP00000141369 TRANSLATION nonsense_mediated_decay - - 3 110.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000064145 Arih2 ENSMUST00000192853 - NO_TRANSLATION retained_intron ENSMUSG00000064145 Arih2 ENSMUST00000193190 ENSMUSP00000141914 TRANSLATION nonsense_mediated_decay - - 5 318.0 18.0 3.846 0.0 50.1 0.0 -4,-5 0.0007 6 -2.0 MINOR ENSMUSG00000064145 Arih2 ENSMUST00000195741 - NO_TRANSLATION retained_intron ENSMUSG00000064145 Arih2 ENSMUST00000194290 - NO_TRANSLATION retained_intron ENSMUSG00000064145 Arih2 ENSMUST00000195623 - NO_TRANSLATION retained_intron ENSMUSG00000032131 Abcg4 ENSMUST00000159997 - NO_TRANSLATION retained_intron ENSMUSG00000032131 Abcg4 ENSMUST00000162783 ENSMUSP00000123999 TRANSLATION nonsense_mediated_decay start - 5 65.0 0.0 1.35 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032131 Abcg4 ENSMUST00000161408 ENSMUSP00000124154 TRANSLATION protein_coding stop - 5 104.0 0.0 0.1 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032131 Abcg4 ENSMUST00000160323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032131 Abcg4 ENSMUST00000161354 ENSMUSP00000124647 TRANSLATION protein_coding - CCDS23101.1 1 646.0 7.0 7.817 12.2 247.9 5.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000032131 Abcg4 ENSMUST00000161206 - NO_TRANSLATION retained_intron ENSMUSG00000032131 Abcg4 ENSMUST00000085979 - NO_TRANSLATION retained_intron ENSMUSG00000032131 Abcg4 ENSMUST00000160384 ENSMUSP00000124583 TRANSLATION protein_coding stop - 5 83.0 0.0 0.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032131 Abcg4 ENSMUST00000034648 ENSMUSP00000034648 TRANSLATION protein_coding - CCDS23101.1 1 646.0 7.0 7.817 12.2 247.9 5.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000032131 Abcg4 ENSMUST00000159385 - NO_TRANSLATION retained_intron ENSMUSG00000044244 Il20rb ENSMUST00000125259 - NO_TRANSLATION retained_intron ENSMUSG00000044244 Il20rb ENSMUST00000122880 - NO_TRANSLATION retained_intron ENSMUSG00000044244 Il20rb ENSMUST00000098458 ENSMUSP00000096057 TRANSLATION protein_coding - CCDS23438.2 5 308.0 0.0 5.0 3.3 111.5 0.0 -2,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000044244 Il20rb ENSMUST00000136856 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044244 Il20rb ENSMUST00000152756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044244 Il20rb ENSMUST00000136606 - NO_TRANSLATION retained_intron ENSMUSG00000043089 Mmp1a ENSMUST00000217651 ENSMUSP00000151193 TRANSLATION protein_coding - - 1 464.0 23.0 8.0 2.3 349.0 0.0 4,-1 0.9013 - 19.0 PRINCIPAL:1 ENSMUSG00000032564 Cpne4 ENSMUST00000077190 ENSMUSP00000076432 TRANSLATION protein_coding - - 1 475.0 1.0 9.35 3.0 386.9 0.0 -4,-5 0.0707 15 6.808 MINOR ENSMUSG00000032564 Cpne4 ENSMUST00000057742 ENSMUSP00000049663 TRANSLATION protein_coding - CCDS23461.1 1 557.0 7.0 11.73 33.6 412.5 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000032564 Cpne4 ENSMUST00000213452 ENSMUSP00000150551 TRANSLATION protein_coding start/stop - 5 185.0 0.0 4.3 0.0 185.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032564 Cpne4 ENSMUST00000213120 ENSMUSP00000150096 TRANSLATION protein_coding stop - 5 278.0 7.0 6.05 0.0 93.7 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000032564 Cpne4 ENSMUST00000157006 ENSMUSP00000117155 TRANSLATION protein_coding stop - 2 108.0 0.0 1.3 0.0 36.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032564 Cpne4 ENSMUST00000098443 ENSMUSP00000096042 TRANSLATION protein_coding - - 1 145.0 0.0 1.95 0.0 44.2 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000032409 Atr ENSMUST00000190644 - NO_TRANSLATION retained_intron ENSMUSG00000032409 Atr ENSMUST00000189602 - NO_TRANSLATION retained_intron ENSMUSG00000032409 Atr ENSMUST00000185473 - NO_TRANSLATION retained_intron ENSMUSG00000032409 Atr ENSMUST00000188164 - NO_TRANSLATION retained_intron ENSMUSG00000032409 Atr ENSMUST00000215311 ENSMUSP00000149953 TRANSLATION protein_coding - CCDS52890.1 5 2641.0 0.0 23.024 7.6 477.0 0.0 -4,-6 1.0 28 14.0 PRINCIPAL:1 ENSMUSG00000032409 Atr ENSMUST00000034980 ENSMUSP00000034980 TRANSLATION protein_coding - - 5 2635.0 0.0 22.958 3.1 477.0 0.0 -4,-6 0.5549 29 12.504 MINOR ENSMUSG00000032409 Atr ENSMUST00000186997 - NO_TRANSLATION retained_intron ENSMUSG00000032409 Atr ENSMUST00000186061 - NO_TRANSLATION retained_intron ENSMUSG00000032409 Atr ENSMUST00000187356 - NO_TRANSLATION retained_intron ENSMUSG00000032409 Atr ENSMUST00000186524 - NO_TRANSLATION retained_intron ENSMUSG00000032409 Atr ENSMUST00000191269 - NO_TRANSLATION retained_intron ENSMUSG00000032409 Atr ENSMUST00000188088 - NO_TRANSLATION retained_intron ENSMUSG00000032409 Atr ENSMUST00000186127 - NO_TRANSLATION retained_intron ENSMUSG00000032058 Ppp2r1b ENSMUST00000176798 ENSMUSP00000135525 TRANSLATION protein_coding - - 5 667.0 0.0 13.58 1.0 103.9 0.0 -4,-5 0.1926 17 6.666 MINOR ENSMUSG00000032058 Ppp2r1b ENSMUST00000176055 ENSMUSP00000135253 TRANSLATION nonsense_mediated_decay start - 5 93.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032058 Ppp2r1b ENSMUST00000177454 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032058 Ppp2r1b ENSMUST00000174555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032058 Ppp2r1b ENSMUST00000176349 ENSMUSP00000135758 TRANSLATION protein_coding - - 5 603.0 0.0 11.58 1.0 115.7 0.0 -4,-5 0.2653 17 3.998 MINOR ENSMUSG00000032058 Ppp2r1b ENSMUST00000174628 ENSMUSP00000133404 TRANSLATION protein_coding - CCDS72232.1 1 694.0 0.0 13.58 0.0 115.7 0.0 -4,-5 0.2008 17 8.0 ALTERNATIVE:2 ENSMUSG00000032058 Ppp2r1b ENSMUST00000176414 - NO_TRANSLATION retained_intron ENSMUSG00000032058 Ppp2r1b ENSMUST00000175645 ENSMUSP00000135871 TRANSLATION protein_coding - - 5 556.0 0.0 12.58 1.0 104.9 0.0 -4,-5 0.0613 14 6.002 MINOR ENSMUSG00000032058 Ppp2r1b ENSMUST00000114437 ENSMUSP00000110080 TRANSLATION protein_coding - CCDS40626.1 1 601.0 0.0 13.58 3.2 115.7 0.0 -4,-5 1.0 17 9.0 PRINCIPAL:2 ENSMUSG00000032058 Ppp2r1b ENSMUST00000175926 ENSMUSP00000134886 TRANSLATION nonsense_mediated_decay - - 5 135.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032058 Ppp2r1b ENSMUST00000175640 ENSMUSP00000134740 TRANSLATION protein_coding - - 5 474.0 0.0 11.58 1.0 75.7 0.0 -4,-5 0.039 14 2.664 MINOR ENSMUSG00000032058 Ppp2r1b ENSMUST00000034560 ENSMUSP00000034560 TRANSLATION protein_coding - CCDS40625.1 1 658.0 0.0 13.58 0.3 115.7 0.0 -4,-5 0.2557 17 8.0 ALTERNATIVE:2 ENSMUSG00000051095 Or6x1 ENSMUST00000062229 ENSMUSP00000056713 TRANSLATION protein_coding - CCDS23078.1 - 312.0 0.0 1.0 7.5 182.0 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051095 Or6x1 ENSMUST00000214763 ENSMUSP00000151130 TRANSLATION protein_coding - CCDS23078.1 5 312.0 0.0 1.0 7.5 182.0 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051095 Or6x1 ENSMUST00000216720 ENSMUSP00000149030 TRANSLATION protein_coding - CCDS23078.1 5 312.0 0.0 1.0 7.5 182.0 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051095 Or6x1 ENSMUST00000218134 ENSMUSP00000152019 TRANSLATION protein_coding - CCDS23078.1 5 312.0 0.0 1.0 7.5 182.0 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000033629 Hacd3 ENSMUST00000036615 ENSMUSP00000044955 TRANSLATION protein_coding - CCDS23284.1 1 362.0 0.0 4.675 12.5 149.1 0.0 -4,-6 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000079260 Tmppe ENSMUST00000111820 ENSMUSP00000107451 TRANSLATION protein_coding - CCDS52951.1 1 447.0 8.0 0.8 11.8 45.4 0.0 -1,-6 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000040813 Tex264 ENSMUST00000214885 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040813 Tex264 ENSMUST00000185257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040813 Tex264 ENSMUST00000163441 ENSMUSP00000132247 TRANSLATION protein_coding - CCDS23483.1 1 309.0 0.0 3.0 0.4 0.0 0.0 0,-4 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000040813 Tex264 ENSMUST00000188120 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040813 Tex264 ENSMUST00000169068 ENSMUSP00000133194 TRANSLATION protein_coding - CCDS23483.1 1 309.0 0.0 3.0 0.4 0.0 0.0 0,-4 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000040813 Tex264 ENSMUST00000190948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040813 Tex264 ENSMUST00000185645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040813 Tex264 ENSMUST00000188892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040813 Tex264 ENSMUST00000191205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040813 Tex264 ENSMUST00000046735 ENSMUSP00000044654 TRANSLATION protein_coding - CCDS23483.1 1 309.0 0.0 3.0 0.4 0.0 0.0 0,-4 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000049555 Tmie ENSMUST00000198062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049555 Tmie ENSMUST00000050958 ENSMUSP00000060148 TRANSLATION protein_coding - CCDS23578.1 1 153.0 0.0 0.7 6.0 117.3 0.0 1,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049555 Tmie ENSMUST00000199189 - NO_TRANSLATION retained_intron ENSMUSG00000032320 Rcn2 ENSMUST00000147842 ENSMUSP00000120953 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0019 1 -2.0 MINOR ENSMUSG00000032320 Rcn2 ENSMUST00000144869 - NO_TRANSLATION retained_intron ENSMUSG00000032320 Rcn2 ENSMUST00000114276 ENSMUSP00000109915 TRANSLATION protein_coding - CCDS23206.1 1 320.0 20.0 6.1 10.2 60.5 0.0 2,-2 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000032320 Rcn2 ENSMUST00000151585 - NO_TRANSLATION retained_intron ENSMUSG00000032786 Alas1 ENSMUST00000074082 ENSMUSP00000073725 TRANSLATION protein_coding - - 1 641.0 14.0 9.83 8.7 413.1 0.0 -4,-1 0.8151 10 17.0 ALTERNATIVE:1 ENSMUSG00000032786 Alas1 ENSMUST00000214249 - NO_TRANSLATION retained_intron ENSMUSG00000032786 Alas1 ENSMUST00000123115 - NO_TRANSLATION retained_intron ENSMUSG00000032786 Alas1 ENSMUST00000214989 ENSMUSP00000150311 TRANSLATION protein_coding start/stop - 5 166.0 6.0 3.33 0.0 71.7 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000032786 Alas1 ENSMUST00000123601 - NO_TRANSLATION retained_intron ENSMUSG00000032786 Alas1 ENSMUST00000215222 ENSMUSP00000150950 TRANSLATION protein_coding stop - 3 117.0 0.0 0.0 0.0 120.3 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000032786 Alas1 ENSMUST00000141118 ENSMUSP00000117014 TRANSLATION protein_coding - CCDS40756.2 5 642.0 14.0 9.83 8.7 425.5 0.0 -4,-1 1.0 10 17.0 PRINCIPAL:4 ENSMUSG00000032786 Alas1 ENSMUST00000143125 ENSMUSP00000119968 TRANSLATION nonsense_mediated_decay start - 5 110.0 7.0 2.15 0.0 58.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032786 Alas1 ENSMUST00000133617 ENSMUSP00000122117 TRANSLATION nonsense_mediated_decay - - 5 196.0 0.0 0.5 0.0 157.4 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000032786 Alas1 ENSMUST00000219340 - NO_TRANSLATION retained_intron ENSMUSG00000032786 Alas1 ENSMUST00000134053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032786 Alas1 ENSMUST00000112524 ENSMUSP00000108143 TRANSLATION protein_coding - CCDS40756.2 1 642.0 14.0 9.83 8.7 425.5 0.0 -4,-1 1.0 10 17.0 PRINCIPAL:4 ENSMUSG00000032786 Alas1 ENSMUST00000219129 ENSMUSP00000151891 TRANSLATION protein_coding stop - 2 244.0 0.0 1.5 0.0 160.7 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000058443 Rpl10-ps3 ENSMUST00000076364 ENSMUSP00000125806 TRANSLATION protein_coding - - - 214.0 0.0 1.0 32.9 150.3 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000061559 Skic8 ENSMUST00000118771 ENSMUSP00000112811 TRANSLATION protein_coding - - 1 279.0 0.0 7.41 0.0 111.8 0.0 -4,-5 0.0158 7 8.64 MINOR ENSMUSG00000061559 Skic8 ENSMUST00000148494 - NO_TRANSLATION retained_intron ENSMUSG00000061559 Skic8 ENSMUST00000121204 ENSMUSP00000113560 TRANSLATION protein_coding - CCDS23194.1 1 305.0 0.0 8.16 35.8 142.8 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000061559 Skic8 ENSMUST00000127451 ENSMUSP00000119362 TRANSLATION protein_coding stop - 3 107.0 0.0 2.83 0.0 31.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000061559 Skic8 ENSMUST00000144365 - NO_TRANSLATION retained_intron ENSMUSG00000061559 Skic8 ENSMUST00000130368 ENSMUSP00000123077 TRANSLATION protein_coding - CCDS59747.1 1 207.0 0.0 5.83 0.1 109.9 0.0 -4,-5 0.0101 6 5.364 MINOR ENSMUSG00000061559 Skic8 ENSMUST00000051822 ENSMUSP00000056359 TRANSLATION protein_coding - CCDS23194.1 1 305.0 0.0 8.16 35.8 142.8 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000041729 Coro2b ENSMUST00000048043 ENSMUSP00000041826 TRANSLATION protein_coding - CCDS23264.2 1 480.0 0.0 9.41 17.1 225.9 0.0 -4,-2 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000041729 Coro2b ENSMUST00000173171 ENSMUSP00000134709 TRANSLATION protein_coding stop - 5 121.0 0.0 1.8 0.0 120.2 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000041729 Coro2b ENSMUST00000123379 - NO_TRANSLATION retained_intron ENSMUSG00000041729 Coro2b ENSMUST00000131981 ENSMUSP00000133481 TRANSLATION protein_coding start - 3 181.0 0.0 2.95 0.0 70.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000041729 Coro2b ENSMUST00000164246 ENSMUSP00000128441 TRANSLATION protein_coding stop - 5 317.0 0.0 7.06 0.0 155.2 0.0 -4,-1 0.0036 10 -2.0 MINOR ENSMUSG00000041729 Coro2b ENSMUST00000151604 - NO_TRANSLATION retained_intron ENSMUSG00000041729 Coro2b ENSMUST00000174439 ENSMUSP00000134079 TRANSLATION protein_coding stop - 5 94.0 0.0 2.0 0.0 35.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000079677 Fdx2 ENSMUST00000215631 - NO_TRANSLATION retained_intron ENSMUSG00000079677 Fdx2 ENSMUST00000217150 - NO_TRANSLATION retained_intron ENSMUSG00000079677 Fdx2 ENSMUST00000010348 ENSMUSP00000010348 TRANSLATION protein_coding - CCDS22892.1 1 174.0 11.0 2.75 7.7 39.9 0.0 -2,2 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000079677 Fdx2 ENSMUST00000216484 - NO_TRANSLATION retained_intron ENSMUSG00000079677 Fdx2 ENSMUST00000215338 - NO_TRANSLATION retained_intron ENSMUSG00000057349 Or8g30 ENSMUST00000076516 ENSMUSP00000075834 TRANSLATION protein_coding - CCDS23043.1 - 321.0 0.0 1.0 1.3 167.3 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057349 Or8g30 ENSMUST00000216132 ENSMUSP00000149422 TRANSLATION protein_coding - CCDS23043.1 5 321.0 0.0 1.0 1.3 167.3 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031939 Taf1d ENSMUST00000213763 ENSMUSP00000150356 TRANSLATION nonsense_mediated_decay - - 1 288.0 0.0 1.1 0.1 336.1 0.0 -4,-5 0.0924 - -2.0 MINOR ENSMUSG00000031939 Taf1d ENSMUST00000214054 ENSMUSP00000150937 TRANSLATION nonsense_mediated_decay - - 5 288.0 0.0 1.1 0.1 336.1 0.0 -4,-5 0.0924 1 -2.0 MINOR ENSMUSG00000031939 Taf1d ENSMUST00000216768 - NO_TRANSLATION retained_intron ENSMUSG00000031939 Taf1d ENSMUST00000214316 ENSMUSP00000149380 TRANSLATION protein_coding start - 5 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031939 Taf1d ENSMUST00000216256 - NO_TRANSLATION retained_intron ENSMUSG00000031939 Taf1d ENSMUST00000215124 ENSMUSP00000150723 TRANSLATION protein_coding stop - 3 153.0 0.0 0.0 0.0 158.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031939 Taf1d ENSMUST00000164079 ENSMUSP00000129141 TRANSLATION protein_coding - CCDS52726.1 1 290.0 0.0 1.1 0.0 336.1 0.0 -4,-5 0.351 1 8.0 ALTERNATIVE:2 ENSMUSG00000031939 Taf1d ENSMUST00000216825 ENSMUSP00000149377 TRANSLATION nonsense_mediated_decay - - 1 288.0 0.0 1.1 0.1 336.1 0.0 -4,-5 0.0924 - -2.0 MINOR ENSMUSG00000031939 Taf1d ENSMUST00000214221 - NO_TRANSLATION retained_intron ENSMUSG00000031939 Taf1d ENSMUST00000213235 - NO_TRANSLATION retained_intron ENSMUSG00000031939 Taf1d ENSMUST00000214899 - NO_TRANSLATION retained_intron ENSMUSG00000031939 Taf1d ENSMUST00000215749 ENSMUSP00000150491 TRANSLATION nonsense_mediated_decay start - 3 122.0 0.0 0.6 0.0 125.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031939 Taf1d ENSMUST00000034415 ENSMUSP00000034415 TRANSLATION protein_coding - CCDS22836.1 1 322.0 0.0 1.1 0.0 336.1 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000031939 Taf1d ENSMUST00000214045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031939 Taf1d ENSMUST00000213923 - NO_TRANSLATION retained_intron ENSMUSG00000031939 Taf1d ENSMUST00000216109 ENSMUSP00000150890 TRANSLATION protein_coding stop - 5 92.0 0.0 0.0 0.0 74.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041124 Msantd4 ENSMUST00000213011 - NO_TRANSLATION retained_intron ENSMUSG00000041124 Msantd4 ENSMUST00000212075 ENSMUSP00000148805 TRANSLATION protein_coding - CCDS22796.1 1 345.0 0.0 0.0 22.7 81.5 0.0 -4,-2 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000041124 Msantd4 ENSMUST00000047173 ENSMUSP00000038267 TRANSLATION protein_coding - CCDS22796.1 1 345.0 0.0 0.0 22.7 81.5 0.0 -4,-2 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000060509 Xcr1 ENSMUST00000182350 ENSMUSP00000138255 TRANSLATION protein_coding - - 1 322.0 0.0 1.0 0.1 137.0 0.0 -4,-7 0.7683 - 12.0 PRINCIPAL:1 ENSMUSG00000091174 Pate10 ENSMUST00000166746 ENSMUSP00000132657 TRANSLATION protein_coding - CCDS52758.1 1 116.0 0.0 2.0 0.1 0.0 0.0 1,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000066749 Or8b9 ENSMUST00000213956 ENSMUSP00000150698 TRANSLATION protein_coding - CCDS22989.1 5 311.0 0.0 1.0 12.5 167.4 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066749 Or8b9 ENSMUST00000086063 ENSMUSP00000083230 TRANSLATION protein_coding - CCDS22989.1 - 311.0 0.0 1.0 12.5 167.4 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032294 Pkm ENSMUST00000213930 ENSMUSP00000150578 TRANSLATION protein_coding stop - 3 232.0 12.0 6.58 0.0 253.2 0.0 -4,-6 0.0 17 -2.0 MINOR ENSMUSG00000032294 Pkm ENSMUST00000216620 ENSMUSP00000151199 TRANSLATION protein_coding stop - 3 51.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032294 Pkm ENSMUST00000216857 ENSMUSP00000150188 TRANSLATION protein_coding stop - 1 102.0 9.0 2.75 0.0 83.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032294 Pkm ENSMUST00000034834 ENSMUSP00000034834 TRANSLATION protein_coding - CCDS40659.1 1 531.0 41.0 12.58 27.3 690.6 0.0 -4,-6 1.0 35 18.0 PRINCIPAL:3 ENSMUSG00000032294 Pkm ENSMUST00000215623 ENSMUSP00000150901 TRANSLATION protein_coding stop - 3 155.0 11.0 4.25 0.0 137.8 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000032294 Pkm ENSMUST00000163694 ENSMUSP00000128770 TRANSLATION protein_coding - CCDS57681.1 5 531.0 41.0 12.58 27.3 688.2 0.0 -4,-6 0.9922 33 18.0 ALTERNATIVE:1 ENSMUSG00000032294 Pkm ENSMUST00000217353 ENSMUSP00000149983 TRANSLATION protein_coding stop - 3 176.0 11.0 5.25 0.0 169.5 0.0 -4,-6 0.0 10 -2.0 MINOR ENSMUSG00000032294 Pkm ENSMUST00000215660 ENSMUSP00000149206 TRANSLATION protein_coding stop - 3 187.0 11.0 5.58 0.0 189.2 0.0 -4,-6 0.0 11 -2.0 MINOR ENSMUSG00000032294 Pkm ENSMUST00000213220 - NO_TRANSLATION retained_intron ENSMUSG00000032294 Pkm ENSMUST00000217038 ENSMUSP00000150509 TRANSLATION protein_coding stop - 3 184.0 11.0 5.58 0.0 184.9 0.0 -4,-6 0.0 10 -2.0 MINOR ENSMUSG00000032294 Pkm ENSMUST00000214571 - NO_TRANSLATION retained_intron ENSMUSG00000032344 Cgas ENSMUST00000127190 ENSMUSP00000114277 TRANSLATION nonsense_mediated_decay start - 1 230.0 6.0 1.8 0.0 52.2 0.0 -4,-5 0.0005 2 -2.0 MINOR ENSMUSG00000032344 Cgas ENSMUST00000070742 ENSMUSP00000063331 TRANSLATION protein_coding - CCDS40702.1 1 507.0 24.0 5.3 0.1 274.3 0.0 -4,-7 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000032344 Cgas ENSMUST00000034898 ENSMUSP00000034898 TRANSLATION protein_coding - - 1 394.0 20.0 3.8 0.0 155.0 0.0 -4,-7 0.0 3 6.336 MINOR ENSMUSG00000032249 Anp32a ENSMUST00000156461 ENSMUSP00000115293 TRANSLATION protein_coding start/stop - 2 138.0 0.0 3.0 0.0 40.9 0.0 -4,-5 0.0006 4 -2.0 MINOR ENSMUSG00000032249 Anp32a ENSMUST00000126451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032249 Anp32a ENSMUST00000128636 ENSMUSP00000123574 TRANSLATION protein_coding stop - 2 198.0 0.0 4.3 0.0 40.9 0.0 -4,-6 0.0009 6 -2.0 MINOR ENSMUSG00000032249 Anp32a ENSMUST00000136603 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032249 Anp32a ENSMUST00000145679 - NO_TRANSLATION retained_intron ENSMUSG00000032249 Anp32a ENSMUST00000135395 ENSMUSP00000122165 TRANSLATION protein_coding - - 5 233.0 0.0 4.366 0.0 40.9 0.0 -4,-5 0.0058 6 10.998 MINOR ENSMUSG00000032249 Anp32a ENSMUST00000138226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032249 Anp32a ENSMUST00000141277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032249 Anp32a ENSMUST00000085519 ENSMUSP00000082652 TRANSLATION protein_coding - CCDS40663.1 1 247.0 0.0 4.866 2.6 40.9 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000032249 Anp32a ENSMUST00000129026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035164 Zc3h12c ENSMUST00000165519 ENSMUSP00000127603 TRANSLATION protein_coding - CCDS52794.1 5 903.0 4.0 3.0 1.1 218.5 0.0 -4,-5 0.5622 4 16.042 MINOR ENSMUSG00000035164 Zc3h12c ENSMUST00000213645 ENSMUSP00000150821 TRANSLATION protein_coding - - 5 884.0 4.0 3.0 5.8 218.5 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000051118 Or7d10 ENSMUST00000057596 ENSMUSP00000058810 TRANSLATION protein_coding - CCDS22867.1 1 312.0 0.0 1.0 11.2 179.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051118 Or7d10 ENSMUST00000217347 ENSMUSP00000149055 TRANSLATION protein_coding - CCDS22867.1 5 312.0 0.0 1.0 11.2 179.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032384 Csnk1g1 ENSMUST00000117849 ENSMUSP00000113160 TRANSLATION protein_coding - - 1 430.0 5.0 7.39 24.1 154.2 0.0 -4,-5 0.5781 4 16.736 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000034949 ENSMUSP00000034949 TRANSLATION protein_coding - CCDS23300.1 1 459.0 5.0 7.59 28.9 207.1 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000032384 Csnk1g1 ENSMUST00000136773 ENSMUSP00000145744 TRANSLATION protein_coding start - 5 141.0 0.0 1.4 0.0 66.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000146069 - NO_TRANSLATION retained_intron ENSMUSG00000032384 Csnk1g1 ENSMUST00000207167 ENSMUSP00000146845 TRANSLATION nonsense_mediated_decay - - 5 77.0 0.0 0.95 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000206969 ENSMUSP00000146283 TRANSLATION protein_coding start - 3 204.0 0.0 2.15 0.0 113.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000205884 ENSMUSP00000146026 TRANSLATION nonsense_mediated_decay start - 5 164.0 0.0 3.03 0.0 27.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000206528 ENSMUSP00000146047 TRANSLATION protein_coding - - 5 424.0 5.0 7.39 0.0 154.2 0.0 -4,-5 0.0114 4 13.424 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000154589 ENSMUSP00000119407 TRANSLATION protein_coding stop - 3 42.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000153391 - NO_TRANSLATION retained_intron ENSMUSG00000032384 Csnk1g1 ENSMUST00000208011 ENSMUSP00000146513 TRANSLATION nonsense_mediated_decay - - 5 114.0 0.0 1.266 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000124688 - NO_TRANSLATION retained_intron ENSMUSG00000032384 Csnk1g1 ENSMUST00000130798 ENSMUSP00000145938 TRANSLATION protein_coding - - 5 390.0 5.0 7.39 3.0 121.1 0.0 -4,-5 0.0752 4 11.726 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000205379 ENSMUSP00000145724 TRANSLATION protein_coding - - 5 422.0 5.0 7.39 22.2 154.2 0.0 -4,-5 0.4696 4 16.464 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000205489 - NO_TRANSLATION retained_intron ENSMUSG00000032384 Csnk1g1 ENSMUST00000206048 ENSMUSP00000145887 TRANSLATION protein_coding - - 5 461.0 5.0 7.59 0.0 207.1 0.0 -4,-5 0.142 5 17.0 MINOR ENSMUSG00000032384 Csnk1g1 ENSMUST00000206594 ENSMUSP00000145947 TRANSLATION protein_coding - CCDS23300.1 5 459.0 5.0 7.59 28.9 207.1 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000032519 Slc25a38 ENSMUST00000139079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032519 Slc25a38 ENSMUST00000144768 ENSMUSP00000121454 TRANSLATION nonsense_mediated_decay - - 5 195.0 0.0 2.19 0.0 55.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032519 Slc25a38 ENSMUST00000154969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032519 Slc25a38 ENSMUST00000135514 ENSMUSP00000121747 TRANSLATION protein_coding stop - 3 243.0 0.0 4.65 0.0 139.3 0.0 -4,-5 0.0005 2 -2.0 MINOR ENSMUSG00000032519 Slc25a38 ENSMUST00000150093 ENSMUSP00000123357 TRANSLATION nonsense_mediated_decay - - 5 138.0 0.0 2.19 0.0 55.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032519 Slc25a38 ENSMUST00000137522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032519 Slc25a38 ENSMUST00000035106 ENSMUSP00000035106 TRANSLATION protein_coding - CCDS23622.1 1 326.0 0.0 6.125 0.4 197.9 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000034135 Sik3 ENSMUST00000120463 ENSMUSP00000112749 TRANSLATION protein_coding start - 5 1319.0 17.0 7.6675 0.0 252.7 0.0 -2,-5 0.3703 32 -2.0 MINOR ENSMUSG00000034135 Sik3 ENSMUST00000126865 ENSMUSP00000121032 TRANSLATION protein_coding - CCDS23140.2 1 1369.0 17.0 7.6675 0.0 252.7 0.0 -3,-6 1.0 34 18.0 PRINCIPAL:1 ENSMUSG00000034135 Sik3 ENSMUST00000138338 ENSMUSP00000115805 TRANSLATION protein_coding start - 5 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034135 Sik3 ENSMUST00000215954 - NO_TRANSLATION retained_intron ENSMUSG00000034135 Sik3 ENSMUST00000122865 ENSMUSP00000115981 TRANSLATION protein_coding start - 1 506.0 9.0 6.5375 0.0 217.8 0.0 -4,-5 0.0012 17 -2.0 MINOR ENSMUSG00000034135 Sik3 ENSMUST00000153152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034135 Sik3 ENSMUST00000120247 ENSMUSP00000112859 TRANSLATION protein_coding start - 5 1214.0 17.0 7.2675 0.0 252.7 0.0 -4,-2 0.2601 30 -2.0 MINOR ENSMUSG00000032363 Adamts7 ENSMUST00000138227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032363 Adamts7 ENSMUST00000124441 - NO_TRANSLATION retained_intron ENSMUSG00000032363 Adamts7 ENSMUST00000113060 ENSMUSP00000108683 TRANSLATION protein_coding - CCDS40724.1 1 1615.0 18.0 7.3 0.1 473.5 0.0 3,-2 0.7629 - 13.8 MINOR ENSMUSG00000032363 Adamts7 ENSMUST00000144943 - NO_TRANSLATION retained_intron ENSMUSG00000032363 Adamts7 ENSMUST00000134996 ENSMUSP00000119744 TRANSLATION nonsense_mediated_decay - - 1 506.0 15.0 4.46 0.0 221.0 0.0 3,-2 0.0008 - -2.0 MINOR ENSMUSG00000032363 Adamts7 ENSMUST00000113059 ENSMUSP00000108682 TRANSLATION protein_coding - CCDS85708.1 5 1657.0 18.0 7.3 0.0 504.5 0.0 3,-2 0.9335 - 14.0 ALTERNATIVE:2 ENSMUSG00000032363 Adamts7 ENSMUST00000147250 ENSMUSP00000115972 TRANSLATION protein_coding - CCDS81050.1 1 1556.0 18.0 7.3 0.1 473.5 0.0 3,-2 0.6976 - 13.8 MINOR ENSMUSG00000032363 Adamts7 ENSMUST00000167122 ENSMUSP00000129292 TRANSLATION protein_coding - - 5 1633.0 18.0 7.3 0.0 504.5 0.0 3,-2 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000032076 Cadm1 ENSMUST00000114547 ENSMUSP00000110194 TRANSLATION protein_coding - CCDS23148.1 1 445.0 0.0 5.375 7.4 129.5 3.0 1,-3 0.8874 11 9.286 ALTERNATIVE:1 ENSMUSG00000032076 Cadm1 ENSMUST00000151624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032076 Cadm1 ENSMUST00000152459 ENSMUSP00000124119 TRANSLATION protein_coding - CCDS80990.1 1 474.0 0.0 5.733 7.4 129.5 3.0 1,-3 1.0 11 10.0 PRINCIPAL:4 ENSMUSG00000032076 Cadm1 ENSMUST00000214542 ENSMUSP00000149715 TRANSLATION protein_coding - - 1 63.0 0.0 0.2 0.0 0.0 0.0 -2,-5 0.0 - 0.0 MINOR ENSMUSG00000032076 Cadm1 ENSMUST00000114548 ENSMUSP00000110195 TRANSLATION protein_coding - CCDS23150.1 1 428.0 0.0 5.198 6.6 129.5 3.0 1,-3 0.8551 11 8.682 MINOR ENSMUSG00000032076 Cadm1 ENSMUST00000124073 - NO_TRANSLATION retained_intron ENSMUSG00000032076 Cadm1 ENSMUST00000085909 ENSMUSP00000083073 TRANSLATION protein_coding - CCDS23149.1 1 456.0 0.0 5.573 6.3 129.5 3.0 1,-3 0.9209 11 9.338 ALTERNATIVE:1 ENSMUSG00000032076 Cadm1 ENSMUST00000148925 - NO_TRANSLATION retained_intron ENSMUSG00000032076 Cadm1 ENSMUST00000034581 ENSMUSP00000034581 TRANSLATION protein_coding - CCDS23147.1 1 417.0 0.0 5.0 6.6 129.5 3.0 1,-3 0.8558 12 8.286 MINOR ENSMUSG00000032076 Cadm1 ENSMUST00000143026 ENSMUSP00000124555 TRANSLATION protein_coding - - 5 390.0 0.0 5.0 4.0 129.5 3.0 1,-3 0.5285 9 7.474 MINOR ENSMUSG00000032076 Cadm1 ENSMUST00000239368 ENSMUSP00000159247 TRANSLATION protein_coding - - - 361.0 0.0 5.298 0.0 129.5 0.0 1,-3 0.0407 7 7.13 MINOR ENSMUSG00000032267 Usp28 ENSMUST00000213457 - NO_TRANSLATION retained_intron ENSMUSG00000032267 Usp28 ENSMUST00000215850 - NO_TRANSLATION retained_intron ENSMUSG00000032267 Usp28 ENSMUST00000216607 - NO_TRANSLATION retained_intron ENSMUSG00000032267 Usp28 ENSMUST00000215856 ENSMUSP00000150707 TRANSLATION protein_coding start - 1 698.0 0.0 9.4 0.0 65.4 0.0 -4,-5 0.0011 4 -2.0 MINOR ENSMUSG00000032267 Usp28 ENSMUST00000215788 ENSMUSP00000150005 TRANSLATION protein_coding stop - 2 127.0 0.0 2.65 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032267 Usp28 ENSMUST00000215118 - NO_TRANSLATION retained_intron ENSMUSG00000032267 Usp28 ENSMUST00000213874 ENSMUSP00000149207 TRANSLATION protein_coding - - 1 1026.0 0.0 19.25 0.0 175.2 0.0 -4,-5 0.1715 10 10.5 MINOR ENSMUSG00000032267 Usp28 ENSMUST00000215378 - NO_TRANSLATION retained_intron ENSMUSG00000032267 Usp28 ENSMUST00000047349 ENSMUSP00000047467 TRANSLATION protein_coding - CCDS40613.1 1 1051.0 0.0 20.0 8.0 174.9 0.0 -4,-5 1.0 10 14.982 PRINCIPAL:1 ENSMUSG00000032267 Usp28 ENSMUST00000216657 - NO_TRANSLATION retained_intron ENSMUSG00000032936 Camkv ENSMUST00000192318 - NO_TRANSLATION retained_intron ENSMUSG00000032936 Camkv ENSMUST00000194206 ENSMUSP00000141444 TRANSLATION protein_coding - - 5 484.0 3.0 5.844 0.7 110.0 0.0 -4,-5 0.0232 15 7.512 MINOR ENSMUSG00000032936 Camkv ENSMUST00000195219 ENSMUSP00000142005 TRANSLATION protein_coding stop - 3 48.0 0.0 0.794 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032936 Camkv ENSMUST00000193533 ENSMUSP00000141347 TRANSLATION nonsense_mediated_decay - - 3 66.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032936 Camkv ENSMUST00000035700 ENSMUSP00000040430 TRANSLATION protein_coding - CCDS40763.1 1 512.0 3.0 6.594 4.1 209.8 0.0 -4,-5 1.0 16 17.0 PRINCIPAL:1 ENSMUSG00000035048 Anapc13 ENSMUST00000190354 - NO_TRANSLATION retained_intron ENSMUSG00000035048 Anapc13 ENSMUST00000190279 ENSMUSP00000140967 TRANSLATION protein_coding - CCDS40744.1 1 74.0 0.0 1.33 36.9 69.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035048 Anapc13 ENSMUST00000188398 ENSMUSP00000140325 TRANSLATION protein_coding - CCDS40744.1 2 74.0 0.0 1.33 36.9 69.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035048 Anapc13 ENSMUST00000038673 ENSMUSP00000039761 TRANSLATION protein_coding - CCDS40744.1 5 74.0 0.0 1.33 36.9 69.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035048 Anapc13 ENSMUST00000186693 ENSMUSP00000139762 TRANSLATION protein_coding - CCDS40744.1 2 74.0 0.0 1.33 36.9 69.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032554 Trf ENSMUST00000035158 ENSMUSP00000035158 TRANSLATION protein_coding - CCDS23451.1 1 697.0 23.0 16.308 0.1 811.5 0.0 4,-1 1.0 53 18.0 PRINCIPAL:1 ENSMUSG00000032554 Trf ENSMUST00000168142 ENSMUSP00000128609 TRANSLATION protein_coding start/stop - 3 249.0 14.0 5.658 0.0 225.6 0.0 -4,-5 0.0 15 -2.0 MINOR ENSMUSG00000032554 Trf ENSMUST00000112645 ENSMUSP00000108264 TRANSLATION protein_coding - CCDS23451.1 1 697.0 23.0 16.308 0.1 811.5 0.0 4,-1 1.0 53 18.0 PRINCIPAL:1 ENSMUSG00000032554 Trf ENSMUST00000164377 ENSMUSP00000128647 TRANSLATION nonsense_mediated_decay - - 3 73.0 0.0 1.0 0.0 49.7 0.0 4,-1 0.0 4 -2.0 MINOR ENSMUSG00000032554 Trf ENSMUST00000165296 ENSMUSP00000129013 TRANSLATION protein_coding stop - 5 171.0 2.0 3.75 0.0 161.6 0.0 4,-1 0.0 11 -2.0 MINOR ENSMUSG00000032554 Trf ENSMUST00000170904 ENSMUSP00000128390 TRANSLATION protein_coding start/stop - 5 278.0 14.0 5.99 0.0 244.6 0.0 -4,-5 0.0 18 -2.0 MINOR ENSMUSG00000032554 Trf ENSMUST00000190051 - NO_TRANSLATION retained_intron ENSMUSG00000032554 Trf ENSMUST00000112503 - NO_TRANSLATION retained_intron ENSMUSG00000032554 Trf ENSMUST00000126359 ENSMUSP00000120472 TRANSLATION protein_coding stop - 5 237.0 8.0 5.58 0.0 344.0 0.0 -4,-2 0.0012 16 -2.0 MINOR ENSMUSG00000053914 Kdm4d ENSMUST00000115647 ENSMUSP00000111311 TRANSLATION protein_coding stop - 1 450.0 15.0 1.0 0.0 198.3 0.0 -4,-6 0.0947 - -2.0 MINOR ENSMUSG00000053914 Kdm4d ENSMUST00000058796 ENSMUSP00000061632 TRANSLATION protein_coding - CCDS22822.2 1 510.0 15.0 1.0 0.1 198.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000032606 Nicn1 ENSMUST00000192035 - NO_TRANSLATION retained_intron ENSMUSG00000032606 Nicn1 ENSMUST00000035227 ENSMUSP00000035227 TRANSLATION protein_coding - CCDS40767.1 1 213.0 0.0 0.0 15.4 0.0 0.0 -4,-2 1.0 4 4.0 PRINCIPAL:1 ENSMUSG00000032606 Nicn1 ENSMUST00000194496 - NO_TRANSLATION retained_intron ENSMUSG00000032606 Nicn1 ENSMUST00000195695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045519 Zfp560 ENSMUST00000068079 ENSMUSP00000065620 TRANSLATION protein_coding - CCDS22877.1 1 754.0 60.0 0.8 0.1 435.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000045519 Zfp560 ENSMUST00000214965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045519 Zfp560 ENSMUST00000143992 ENSMUSP00000150927 TRANSLATION protein_coding - - 1 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000050445 Cyp8b1 ENSMUST00000062474 ENSMUSP00000052989 TRANSLATION protein_coding - CCDS23641.1 - 500.0 24.0 1.0 9.2 162.4 0.0 1,-3 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000032097 Ddx6 ENSMUST00000170489 ENSMUSP00000128421 TRANSLATION protein_coding - CCDS23116.1 5 483.0 12.0 10.2 32.5 239.5 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000032097 Ddx6 ENSMUST00000217034 ENSMUSP00000149620 TRANSLATION protein_coding - CCDS23116.1 1 483.0 12.0 10.2 32.5 239.5 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000032097 Ddx6 ENSMUST00000213697 - NO_TRANSLATION retained_intron ENSMUSG00000032094 Cd3d ENSMUST00000214715 ENSMUSP00000150999 TRANSLATION protein_coding start - 2 38.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000032094 Cd3d ENSMUST00000034602 ENSMUSP00000034602 TRANSLATION protein_coding - CCDS23124.1 1 173.0 0.0 2.0 7.1 110.3 0.0 3,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000032094 Cd3d ENSMUST00000214800 - NO_TRANSLATION retained_intron ENSMUSG00000032443 Zcwpw2 ENSMUST00000111769 ENSMUSP00000159157 TRANSLATION nonsense_mediated_decay start - 1 216.0 4.0 1.12 0.0 98.5 0.0 -4,-5 0.0217 - -2.0 MINOR ENSMUSG00000032443 Zcwpw2 ENSMUST00000217232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032443 Zcwpw2 ENSMUST00000187803 ENSMUSP00000159064 TRANSLATION protein_coding - - - 125.0 4.0 1.064 0.0 55.7 0.0 -4,-5 0.0009 - 12.004 MINOR ENSMUSG00000032443 Zcwpw2 ENSMUST00000238919 ENSMUSP00000158867 TRANSLATION protein_coding - - - 331.0 4.0 1.384 0.3 98.5 0.0 -4,-5 0.7813 - 16.0 PRINCIPAL:1 ENSMUSG00000032443 Zcwpw2 ENSMUST00000191100 ENSMUSP00000159110 TRANSLATION nonsense_mediated_decay - - 1 125.0 4.0 1.064 0.0 55.7 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000032443 Zcwpw2 ENSMUST00000187329 - NO_TRANSLATION retained_intron ENSMUSG00000032458 Copb2 ENSMUST00000186657 - NO_TRANSLATION retained_intron ENSMUSG00000032458 Copb2 ENSMUST00000187151 - NO_TRANSLATION retained_intron ENSMUSG00000032458 Copb2 ENSMUST00000188913 - NO_TRANSLATION retained_intron ENSMUSG00000032458 Copb2 ENSMUST00000187336 - NO_TRANSLATION retained_intron ENSMUSG00000032458 Copb2 ENSMUST00000189395 - NO_TRANSLATION retained_intron ENSMUSG00000032458 Copb2 ENSMUST00000035033 ENSMUSP00000035033 TRANSLATION protein_coding - CCDS40734.1 1 905.0 0.0 18.5 10.3 683.5 0.0 -4,-7 1.0 39 15.0 PRINCIPAL:1 ENSMUSG00000032312 Csk ENSMUST00000217314 ENSMUSP00000150984 TRANSLATION protein_coding - CCDS23228.1 1 450.0 18.0 11.58 36.0 434.6 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000032312 Csk ENSMUST00000215958 - NO_TRANSLATION retained_intron ENSMUSG00000032312 Csk ENSMUST00000215396 ENSMUSP00000150590 TRANSLATION protein_coding - CCDS23228.1 1 450.0 18.0 11.58 36.0 434.6 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000032312 Csk ENSMUST00000034863 ENSMUSP00000034863 TRANSLATION protein_coding - CCDS23228.1 1 450.0 18.0 11.58 36.0 434.6 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000032312 Csk ENSMUST00000217128 ENSMUSP00000150240 TRANSLATION protein_coding stop - 2 139.0 0.0 3.83 0.0 122.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000032312 Csk ENSMUST00000213660 - NO_TRANSLATION retained_intron ENSMUSG00000032312 Csk ENSMUST00000216934 ENSMUSP00000149308 TRANSLATION protein_coding stop - 2 108.0 0.0 2.83 0.0 84.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032312 Csk ENSMUST00000213943 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032312 Csk ENSMUST00000216979 ENSMUSP00000149143 TRANSLATION protein_coding stop - 5 91.0 0.0 2.33 0.0 53.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031870 Pgr ENSMUST00000189181 ENSMUSP00000140124 TRANSLATION protein_coding - CCDS22816.1 1 926.0 28.0 7.0 1.1 1163.5 0.0 -4,-5 1.0 16 19.0 PRINCIPAL:1 ENSMUSG00000031870 Pgr ENSMUST00000098986 ENSMUSP00000096584 TRANSLATION protein_coding - - 1 761.0 28.0 7.0 0.0 886.5 0.0 -4,-5 0.1699 14 12.0 MINOR ENSMUSG00000031870 Pgr ENSMUST00000151080 - NO_TRANSLATION retained_intron ENSMUSG00000031870 Pgr ENSMUST00000070463 ENSMUSP00000063562 TRANSLATION protein_coding - CCDS22816.1 1 926.0 28.0 7.0 1.1 1163.5 0.0 -4,-5 1.0 16 19.0 PRINCIPAL:1 ENSMUSG00000062121 Or10d1b ENSMUST00000082027 ENSMUSP00000080686 TRANSLATION protein_coding - CCDS23057.1 - 311.0 0.0 1.0 12.5 161.1 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062121 Or10d1b ENSMUST00000215192 ENSMUSP00000149664 TRANSLATION protein_coding - CCDS23057.1 5 311.0 0.0 1.0 12.5 161.1 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063221 Or8d23 ENSMUST00000058789 ENSMUSP00000080385 TRANSLATION protein_coding - CCDS23032.1 - 308.0 0.0 1.0 9.3 152.8 4.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063221 Or8d23 ENSMUST00000217208 ENSMUSP00000149230 TRANSLATION protein_coding - CCDS23032.1 5 308.0 0.0 1.0 9.3 152.8 4.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050721 Plekho2 ENSMUST00000214740 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050721 Plekho2 ENSMUST00000068944 ENSMUSP00000063677 TRANSLATION protein_coding - CCDS23294.1 1 495.0 11.0 1.3 2.3 44.9 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000050721 Plekho2 ENSMUST00000213554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050721 Plekho2 ENSMUST00000213652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041737 Tmem45b ENSMUST00000213807 ENSMUSP00000150828 TRANSLATION protein_coding stop - 5 63.0 0.0 0.8 0.0 0.0 2.0 -2,-7 0.0005 - -2.0 MINOR ENSMUSG00000041737 Tmem45b ENSMUST00000216875 - NO_TRANSLATION retained_intron ENSMUSG00000041737 Tmem45b ENSMUST00000048050 ENSMUSP00000042313 TRANSLATION protein_coding - CCDS22950.1 1 278.0 0.0 5.19 23.7 118.5 12.0 -2,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000041737 Tmem45b ENSMUST00000217007 ENSMUSP00000149691 TRANSLATION protein_coding - - 2 192.0 0.0 3.64 0.0 118.5 9.0 -4,-5 0.0203 1 8.898 MINOR ENSMUSG00000074001 Klhl40 ENSMUST00000098272 ENSMUSP00000095873 TRANSLATION protein_coding - CCDS23637.1 1 621.0 0.0 5.4 12.2 257.3 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000074001 Klhl40 ENSMUST00000216358 - NO_TRANSLATION retained_intron ENSMUSG00000032128 Robo3 ENSMUST00000167089 - NO_TRANSLATION retained_intron ENSMUSG00000032128 Robo3 ENSMUST00000034643 ENSMUSP00000034643 TRANSLATION protein_coding - - 5 1380.0 0.0 15.064 0.0 349.7 1.0 -4,-5 1.0 - 8.0 PRINCIPAL:4 ENSMUSG00000032128 Robo3 ENSMUST00000171467 - NO_TRANSLATION retained_intron ENSMUSG00000032128 Robo3 ENSMUST00000115038 ENSMUSP00000110690 TRANSLATION protein_coding - CCDS52770.1 5 1402.0 0.0 15.064 0.0 349.7 1.0 -2,-5 0.8879 - 8.0 ALTERNATIVE:2 ENSMUSG00000032128 Robo3 ENSMUST00000170512 ENSMUSP00000150639 TRANSLATION nonsense_mediated_decay - - 1 1345.0 0.0 15.064 0.0 349.7 1.0 -4,-5 0.4822 - -2.0 MINOR ENSMUSG00000032128 Robo3 ENSMUST00000167216 - NO_TRANSLATION retained_intron ENSMUSG00000042185 Nfrkb ENSMUST00000086167 ENSMUSP00000083341 TRANSLATION protein_coding - CCDS22949.1 1 1296.0 0.0 5.35 7.7 107.3 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000042185 Nfrkb ENSMUST00000215544 - NO_TRANSLATION retained_intron ENSMUSG00000042185 Nfrkb ENSMUST00000128375 - NO_TRANSLATION retained_intron ENSMUSG00000042185 Nfrkb ENSMUST00000134528 - NO_TRANSLATION retained_intron ENSMUSG00000042185 Nfrkb ENSMUST00000150179 - NO_TRANSLATION retained_intron ENSMUSG00000042185 Nfrkb ENSMUST00000131540 ENSMUSP00000119622 TRANSLATION nonsense_mediated_decay - - 3 114.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042185 Nfrkb ENSMUST00000132329 ENSMUSP00000116404 TRANSLATION nonsense_mediated_decay - - 1 215.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042185 Nfrkb ENSMUST00000143558 - NO_TRANSLATION retained_intron ENSMUSG00000042185 Nfrkb ENSMUST00000152593 ENSMUSP00000119025 TRANSLATION nonsense_mediated_decay - - 1 258.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042185 Nfrkb ENSMUST00000215211 ENSMUSP00000149841 TRANSLATION protein_coding stop - 5 324.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032359 Ctsh ENSMUST00000034915 ENSMUSP00000034915 TRANSLATION protein_coding - CCDS23399.1 1 333.0 4.0 9.12 8.3 334.5 0.0 3,-2 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000032359 Ctsh ENSMUST00000143172 ENSMUSP00000114427 TRANSLATION protein_coding stop - 3 119.0 0.0 2.19 0.0 0.0 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000032359 Ctsh ENSMUST00000127842 - NO_TRANSLATION retained_intron ENSMUSG00000032359 Ctsh ENSMUST00000123320 ENSMUSP00000122108 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.63 0.0 0.0 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000032359 Ctsh ENSMUST00000190338 - NO_TRANSLATION retained_intron ENSMUSG00000032359 Ctsh ENSMUST00000186126 - NO_TRANSLATION retained_intron ENSMUSG00000032359 Ctsh ENSMUST00000142750 - NO_TRANSLATION retained_intron ENSMUSG00000032359 Ctsh ENSMUST00000132718 ENSMUSP00000117599 TRANSLATION protein_coding stop - 3 198.0 2.0 4.54 0.0 145.2 0.0 -2,-5 0.0003 2 -2.0 MINOR ENSMUSG00000032359 Ctsh ENSMUST00000151219 - NO_TRANSLATION retained_intron ENSMUSG00000032359 Ctsh ENSMUST00000187437 - NO_TRANSLATION retained_intron ENSMUSG00000032359 Ctsh ENSMUST00000185459 ENSMUSP00000140437 TRANSLATION protein_coding start/stop - 5 290.0 4.0 7.79 0.0 303.5 0.0 4,-1 0.0096 5 -2.0 MINOR ENSMUSG00000086228 Ubap1l ENSMUST00000147185 ENSMUSP00000128815 TRANSLATION protein_coding - CCDS52836.1 5 384.0 0.0 2.55 0.4 0.0 0.0 -4,-5 0.7963 - 4.998 PRINCIPAL:1 ENSMUSG00000086228 Ubap1l ENSMUST00000239433 ENSMUSP00000159297 TRANSLATION protein_coding start - - 243.0 0.0 3.05 0.0 0.0 0.0 -4,-1 0.0962 - -2.0 MINOR ENSMUSG00000086228 Ubap1l ENSMUST00000215152 ENSMUSP00000149471 TRANSLATION protein_coding stop - 3 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0187 - -2.0 MINOR ENSMUSG00000086228 Ubap1l ENSMUST00000217103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074500 Zfp558 ENSMUST00000162441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074500 Zfp558 ENSMUST00000159596 ENSMUSP00000126946 TRANSLATION nonsense_mediated_decay - - 2 107.0 0.0 1.15 0.0 81.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000074500 Zfp558 ENSMUST00000034646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074500 Zfp558 ENSMUST00000034647 ENSMUSP00000132305 TRANSLATION protein_coding - CCDS52729.1 5 407.0 36.0 2.0 6.0 277.3 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000032175 Tyk2 ENSMUST00000213717 - NO_TRANSLATION retained_intron ENSMUSG00000032175 Tyk2 ENSMUST00000216874 ENSMUSP00000150354 TRANSLATION protein_coding - CCDS57656.1 1 1207.0 3.0 16.53 0.0 442.8 0.0 -4,-6 0.6331 13 13.5 MINOR ENSMUSG00000032175 Tyk2 ENSMUST00000001036 ENSMUSP00000001036 TRANSLATION protein_coding - CCDS57656.1 5 1207.0 3.0 16.53 0.0 442.8 0.0 -4,-6 0.6331 13 13.5 MINOR ENSMUSG00000032175 Tyk2 ENSMUST00000214454 ENSMUSP00000150214 TRANSLATION protein_coding - - 1 1184.0 3.0 17.28 0.4 442.8 0.0 -4,-6 0.9774 13 15.0 PRINCIPAL:1 ENSMUSG00000032175 Tyk2 ENSMUST00000214864 ENSMUSP00000151194 TRANSLATION protein_coding - - 1 159.0 0.0 1.8 0.0 0.0 0.0 -4,-6 0.0 2 0.0 MINOR ENSMUSG00000032175 Tyk2 ENSMUST00000214615 - NO_TRANSLATION retained_intron ENSMUSG00000003299 Mrpl4 ENSMUST00000216824 ENSMUSP00000150591 TRANSLATION nonsense_mediated_decay - - 2 160.0 0.0 3.226 0.0 87.6 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000003299 Mrpl4 ENSMUST00000216175 ENSMUSP00000150420 TRANSLATION nonsense_mediated_decay - - 5 172.0 0.0 3.476 0.0 90.1 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000003299 Mrpl4 ENSMUST00000213977 - NO_TRANSLATION retained_intron ENSMUSG00000003299 Mrpl4 ENSMUST00000216466 ENSMUSP00000151075 TRANSLATION nonsense_mediated_decay start - 1 33.0 0.0 0.83 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000003299 Mrpl4 ENSMUST00000216325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003299 Mrpl4 ENSMUST00000216818 ENSMUSP00000149690 TRANSLATION protein_coding start/stop - 3 219.0 0.0 4.91 0.0 140.8 0.0 -4,0 0.0008 6 -2.0 MINOR ENSMUSG00000003299 Mrpl4 ENSMUST00000003386 ENSMUSP00000003386 TRANSLATION protein_coding - CCDS40548.1 1 294.0 0.0 7.32 6.3 186.0 0.0 -4,0 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000003299 Mrpl4 ENSMUST00000214124 ENSMUSP00000150112 TRANSLATION protein_coding stop - 5 264.0 0.0 5.62 0.0 96.2 0.0 -4,0 0.0006 6 -2.0 MINOR ENSMUSG00000023093 Pate12 ENSMUST00000041537 ENSMUSP00000048154 TRANSLATION protein_coding - CCDS52764.1 5 99.0 0.0 2.75 0.4 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000063058 Prr23a2 ENSMUST00000071302 ENSMUSP00000071270 TRANSLATION protein_coding - CCDS52895.1 - 253.0 0.0 0.4 0.0 300.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049708 Or8g19 ENSMUST00000214052 ENSMUSP00000151012 TRANSLATION protein_coding - CCDS40590.1 3 311.0 0.0 1.0 11.4 166.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049708 Or8g19 ENSMUST00000216405 ENSMUSP00000150009 TRANSLATION protein_coding - CCDS40590.1 5 311.0 0.0 1.0 11.4 166.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032451 Trim42 ENSMUST00000035026 ENSMUSP00000035026 TRANSLATION protein_coding - CCDS23422.1 1 723.0 20.0 0.2 9.2 58.2 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000039163 Cmc1 ENSMUST00000044220 ENSMUSP00000047904 TRANSLATION protein_coding - CCDS40800.1 1 106.0 0.0 2.995 18.2 67.6 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000039163 Cmc1 ENSMUST00000215799 ENSMUSP00000150859 TRANSLATION protein_coding - - 1 58.0 0.0 1.5 0.0 35.8 0.0 -4,-5 0.0 - 6.186 MINOR ENSMUSG00000041248 Kcnj1 ENSMUST00000213393 ENSMUSP00000150540 TRANSLATION protein_coding - CCDS22953.1 5 372.0 0.0 0.8 22.7 471.8 4.0 -4,0 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000041248 Kcnj1 ENSMUST00000172015 ENSMUSP00000131625 TRANSLATION protein_coding - CCDS52751.1 1 392.0 0.0 0.8 3.1 471.8 4.0 -4,-1 0.4362 - 12.388 MINOR ENSMUSG00000041248 Kcnj1 ENSMUST00000047334 ENSMUSP00000046793 TRANSLATION protein_coding - CCDS22953.1 1 372.0 0.0 0.8 22.7 471.8 4.0 -4,0 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032531 Amotl2 ENSMUST00000153911 ENSMUSP00000119903 TRANSLATION protein_coding stop - 2 220.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0011 3 -2.0 MINOR ENSMUSG00000032531 Amotl2 ENSMUST00000130602 ENSMUSP00000115845 TRANSLATION protein_coding start - 5 587.0 0.0 0.0 0.0 316.3 0.0 -4,-5 0.0867 8 -2.0 MINOR ENSMUSG00000032531 Amotl2 ENSMUST00000155143 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032531 Amotl2 ENSMUST00000138224 - NO_TRANSLATION retained_intron ENSMUSG00000032531 Amotl2 ENSMUST00000156485 ENSMUSP00000116554 TRANSLATION protein_coding stop - 2 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032531 Amotl2 ENSMUST00000145937 ENSMUSP00000114950 TRANSLATION protein_coding stop - 2 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032531 Amotl2 ENSMUST00000126616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032531 Amotl2 ENSMUST00000142011 ENSMUSP00000120378 TRANSLATION nonsense_mediated_decay - - 1 718.0 0.0 0.0 0.0 316.3 0.0 -4,-5 0.1011 10 -2.0 MINOR ENSMUSG00000032531 Amotl2 ENSMUST00000145913 ENSMUSP00000118126 TRANSLATION protein_coding stop - 2 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032531 Amotl2 ENSMUST00000136934 - NO_TRANSLATION retained_intron ENSMUSG00000032531 Amotl2 ENSMUST00000153965 ENSMUSP00000121113 TRANSLATION protein_coding - - 1 805.0 0.0 0.0 0.0 316.3 0.0 -4,-7 0.153 12 2.0 ALTERNATIVE:2 ENSMUSG00000032531 Amotl2 ENSMUST00000134483 ENSMUSP00000118176 TRANSLATION protein_coding stop - 3 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032531 Amotl2 ENSMUST00000035121 ENSMUSP00000035121 TRANSLATION protein_coding - CCDS40745.1 1 772.0 0.0 0.0 0.4 316.3 0.0 -4,-5 1.0 12 2.0 PRINCIPAL:2 ENSMUSG00000032531 Amotl2 ENSMUST00000190047 ENSMUSP00000140688 TRANSLATION protein_coding stop - 5 113.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000046402 Rbp1 ENSMUST00000052068 ENSMUSP00000059749 TRANSLATION protein_coding - CCDS23424.1 1 135.0 17.0 3.25 36.9 67.3 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000041608 Entpd3 ENSMUST00000143579 - NO_TRANSLATION retained_intron ENSMUSG00000041608 Entpd3 ENSMUST00000047687 ENSMUSP00000036830 TRANSLATION protein_coding - CCDS23629.1 1 529.0 0.0 8.6 7.4 333.1 0.0 -4,-7 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000046603 Tcaim ENSMUST00000149659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046603 Tcaim ENSMUST00000052740 ENSMUSP00000049759 TRANSLATION protein_coding - CCDS23647.2 1 509.0 0.0 6.0 0.4 529.7 0.0 -4,0 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000046603 Tcaim ENSMUST00000136274 ENSMUSP00000120948 TRANSLATION nonsense_mediated_decay - - 5 126.0 0.0 0.0 0.0 105.7 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000046603 Tcaim ENSMUST00000213178 - NO_TRANSLATION retained_intron ENSMUSG00000050074 Spink8 ENSMUST00000198988 ENSMUSP00000142586 TRANSLATION protein_coding - CCDS40777.1 1 105.0 0.0 2.66 0.1 40.3 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000050074 Spink8 ENSMUST00000118732 ENSMUSP00000112990 TRANSLATION protein_coding - - 1 95.0 0.0 1.83 0.0 30.6 0.0 3,-2 0.0078 - 8.682 MINOR ENSMUSG00000050074 Spink8 ENSMUST00000200555 ENSMUSP00000142856 TRANSLATION protein_coding stop - 5 49.0 0.0 0.83 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000045594 Glb1 ENSMUST00000063042 ENSMUSP00000055803 TRANSLATION protein_coding - CCDS23593.1 1 647.0 12.0 12.7 0.1 424.0 0.0 3,-2 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000045594 Glb1 ENSMUST00000217583 ENSMUSP00000149937 TRANSLATION nonsense_mediated_decay - - 1 291.0 12.0 6.85 0.0 355.5 0.0 -4,-6 0.0008 4 -2.0 MINOR ENSMUSG00000037112 Sik2 ENSMUST00000177346 - NO_TRANSLATION retained_intron ENSMUSG00000037112 Sik2 ENSMUST00000177203 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037112 Sik2 ENSMUST00000176327 - NO_TRANSLATION retained_intron ENSMUSG00000037112 Sik2 ENSMUST00000176491 ENSMUSP00000134954 TRANSLATION nonsense_mediated_decay - - 1 929.0 18.0 6.15 0.3 249.4 0.0 -4,-7 0.5592 - -2.0 MINOR ENSMUSG00000037112 Sik2 ENSMUST00000068484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037112 Sik2 ENSMUST00000041375 ENSMUSP00000038761 TRANSLATION protein_coding - CCDS40627.1 1 931.0 18.0 6.15 0.3 249.4 0.0 -4,-7 0.673 15 14.0 ALTERNATIVE:2 ENSMUSG00000037112 Sik2 ENSMUST00000176663 ENSMUSP00000135376 TRANSLATION protein_coding - - 5 929.0 18.0 6.15 0.3 249.4 0.0 -4,-7 0.5592 15 14.0 ALTERNATIVE:2 ENSMUSG00000037112 Sik2 ENSMUST00000176824 ENSMUSP00000134936 TRANSLATION protein_coding - - 5 927.0 18.0 6.15 1.7 249.4 0.0 -4,-7 1.0 15 15.0 PRINCIPAL:2 ENSMUSG00000032571 Pik3r4 ENSMUST00000214254 - NO_TRANSLATION retained_intron ENSMUSG00000032571 Pik3r4 ENSMUST00000188385 - NO_TRANSLATION retained_intron ENSMUSG00000032571 Pik3r4 ENSMUST00000188784 ENSMUSP00000140988 TRANSLATION protein_coding - - 1 305.0 0.0 1.18 0.0 47.3 0.0 -4,-5 0.001 5 2.628 MINOR ENSMUSG00000032571 Pik3r4 ENSMUST00000186943 ENSMUSP00000140311 TRANSLATION protein_coding stop - 5 208.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032571 Pik3r4 ENSMUST00000191117 - NO_TRANSLATION retained_intron ENSMUSG00000032571 Pik3r4 ENSMUST00000191268 ENSMUSP00000139427 TRANSLATION protein_coding - CCDS40753.1 1 1358.0 0.0 4.785 15.5 103.5 0.0 -4,-5 1.0 34 16.0 PRINCIPAL:1 ENSMUSG00000032571 Pik3r4 ENSMUST00000187446 - NO_TRANSLATION retained_intron ENSMUSG00000032571 Pik3r4 ENSMUST00000187573 - NO_TRANSLATION retained_intron ENSMUSG00000032571 Pik3r4 ENSMUST00000065778 ENSMUSP00000067400 TRANSLATION protein_coding - CCDS40753.1 1 1358.0 0.0 4.785 15.5 103.5 0.0 -4,-5 1.0 34 16.0 PRINCIPAL:1 ENSMUSG00000032571 Pik3r4 ENSMUST00000189691 - NO_TRANSLATION retained_intron ENSMUSG00000032571 Pik3r4 ENSMUST00000190358 ENSMUSP00000139643 TRANSLATION protein_coding stop - 2 174.0 0.0 0.6 0.0 45.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000013822 Elof1 ENSMUST00000214394 ENSMUSP00000150536 TRANSLATION protein_coding - CCDS40559.1 2 83.0 4.0 2.0 29.0 110.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000013822 Elof1 ENSMUST00000213233 ENSMUSP00000150169 TRANSLATION protein_coding - CCDS40559.1 3 83.0 4.0 2.0 29.0 110.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000013822 Elof1 ENSMUST00000216837 ENSMUSP00000149885 TRANSLATION protein_coding - CCDS40559.1 1 83.0 4.0 2.0 29.0 110.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000013822 Elof1 ENSMUST00000013966 ENSMUSP00000013966 TRANSLATION protein_coding - CCDS40559.1 1 83.0 4.0 2.0 29.0 110.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000013822 Elof1 ENSMUST00000166335 ENSMUSP00000128173 TRANSLATION protein_coding - CCDS40559.1 1 83.0 4.0 2.0 29.0 110.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000034485 Uaca ENSMUST00000216574 - NO_TRANSLATION retained_intron ENSMUSG00000034485 Uaca ENSMUST00000217656 ENSMUSP00000150547 TRANSLATION protein_coding start - 1 1236.0 0.0 7.116 0.0 83.0 0.0 -4,-7 0.3765 36 -2.0 MINOR ENSMUSG00000034485 Uaca ENSMUST00000214997 - NO_TRANSLATION retained_intron ENSMUSG00000034485 Uaca ENSMUST00000050183 ENSMUSP00000062047 TRANSLATION protein_coding - CCDS23259.1 1 1413.0 0.0 7.116 0.4 53.4 0.0 -4,-7 1.0 42 8.0 PRINCIPAL:2 ENSMUSG00000034485 Uaca ENSMUST00000214354 ENSMUSP00000151172 TRANSLATION protein_coding - - 5 1411.0 0.0 7.116 0.4 42.5 0.0 -4,-7 0.6189 42 7.0 ALTERNATIVE:2 ENSMUSG00000006241 Ccdc159 ENSMUST00000214734 ENSMUSP00000150744 TRANSLATION nonsense_mediated_decay - - 2 267.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0425 - -2.0 MINOR ENSMUSG00000006241 Ccdc159 ENSMUST00000006403 ENSMUSP00000006403 TRANSLATION protein_coding - CCDS40557.1 1 403.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.8879 - 0.0 PRINCIPAL:2 ENSMUSG00000006241 Ccdc159 ENSMUST00000170304 ENSMUSP00000126474 TRANSLATION protein_coding - CCDS52738.1 1 411.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.4195 - 0.0 ALTERNATIVE:2 ENSMUSG00000006241 Ccdc159 ENSMUST00000217589 - NO_TRANSLATION retained_intron ENSMUSG00000006241 Ccdc159 ENSMUST00000216710 ENSMUSP00000148950 TRANSLATION protein_coding - - 5 280.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.0446 - 0.0 ALTERNATIVE:2 ENSMUSG00000032181 Scg3 ENSMUST00000214176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032181 Scg3 ENSMUST00000214244 ENSMUSP00000151074 TRANSLATION protein_coding stop - 2 84.0 0.0 0.0 0.0 36.6 0.0 3,-1 0.002 - -2.0 MINOR ENSMUSG00000032181 Scg3 ENSMUST00000215603 ENSMUSP00000152480 TRANSLATION nonsense_mediated_decay start - 5 51.0 0.0 0.0 0.0 36.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032181 Scg3 ENSMUST00000215722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032181 Scg3 ENSMUST00000213637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032181 Scg3 ENSMUST00000213324 ENSMUSP00000149561 TRANSLATION protein_coding - - 1 466.0 0.0 1.75 11.5 702.1 0.0 3,-1 0.848 10 11.0 ALTERNATIVE:1 ENSMUSG00000032181 Scg3 ENSMUST00000034699 ENSMUSP00000034699 TRANSLATION protein_coding - CCDS23347.1 1 471.0 0.0 1.75 11.5 705.9 0.0 3,-1 1.0 10 11.0 PRINCIPAL:4 ENSMUSG00000025602 Zfp202 ENSMUST00000026693 ENSMUSP00000026693 TRANSLATION protein_coding - CCDS23079.1 1 641.0 32.0 1.4 4.5 345.1 0.0 -4,-5 1.0 - 19.25 PRINCIPAL:1 ENSMUSG00000025602 Zfp202 ENSMUST00000168691 ENSMUSP00000130163 TRANSLATION nonsense_mediated_decay - - 1 133.0 0.0 0.8 0.0 143.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025602 Zfp202 ENSMUST00000168832 ENSMUSP00000132131 TRANSLATION protein_coding - - 1 277.0 0.0 1.6 0.7 190.1 0.0 -4,-5 0.1053 - 6.0 MINOR ENSMUSG00000089865 Gm44503 ENSMUST00000149692 ENSMUSP00000120629 TRANSLATION nonsense_mediated_decay,RT - - 5 387.0 0.0 1.27 0.0 24.9 0.0 -4,-7 0.7925 - -2.0 PRINCIPAL:1 ENSMUSG00000031996 Aplp2 ENSMUST00000214908 - NO_TRANSLATION retained_intron ENSMUSG00000031996 Aplp2 ENSMUST00000217516 - NO_TRANSLATION retained_intron ENSMUSG00000031996 Aplp2 ENSMUST00000214396 - NO_TRANSLATION retained_intron ENSMUSG00000031996 Aplp2 ENSMUST00000072634 ENSMUSP00000072428 TRANSLATION protein_coding - CCDS52749.1 1 751.0 0.0 11.05 0.0 610.4 1.0 4,-1 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000031996 Aplp2 ENSMUST00000217641 ENSMUSP00000149023 TRANSLATION protein_coding - - 1 695.0 0.0 10.05 0.0 539.3 1.0 4,-1 0.0512 5 5.736 MINOR ENSMUSG00000031996 Aplp2 ENSMUST00000217658 - NO_TRANSLATION retained_intron ENSMUSG00000031996 Aplp2 ENSMUST00000213273 - NO_TRANSLATION retained_intron ENSMUSG00000031996 Aplp2 ENSMUST00000213254 ENSMUSP00000149732 TRANSLATION protein_coding stop - 5 624.0 0.0 9.25 0.0 523.5 0.0 4,-1 0.0319 4 -2.0 MINOR ENSMUSG00000031996 Aplp2 ENSMUST00000216921 - NO_TRANSLATION retained_intron ENSMUSG00000031996 Aplp2 ENSMUST00000079758 ENSMUSP00000078694 TRANSLATION protein_coding - CCDS52748.1 1 707.0 0.0 10.05 0.0 539.3 1.0 4,-1 0.162 5 5.736 MINOR ENSMUSG00000031932 Gpr83 ENSMUST00000133278 - NO_TRANSLATION retained_intron ENSMUSG00000031932 Gpr83 ENSMUST00000115624 ENSMUSP00000111287 TRANSLATION protein_coding - CCDS80959.1 1 381.0 0.0 2.8 1.0 78.7 6.0 4,-1 0.0922 - 4.386 MINOR ENSMUSG00000031932 Gpr83 ENSMUST00000034408 ENSMUSP00000034408 TRANSLATION protein_coding - CCDS22829.1 1 423.0 0.0 3.8 2.6 172.3 6.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000033335 Dnm2 ENSMUST00000174050 ENSMUSP00000134696 TRANSLATION protein_coding start - 5 807.0 14.0 16.33 0.0 659.1 0.0 -4,-1 0.0343 18 -2.0 MINOR ENSMUSG00000033335 Dnm2 ENSMUST00000091087 ENSMUSP00000088616 TRANSLATION protein_coding - CCDS57659.1 1 866.0 21.0 17.33 15.6 697.9 0.0 -4,-6 0.9873 21 18.0 ALTERNATIVE:1 ENSMUSG00000033335 Dnm2 ENSMUST00000169194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033335 Dnm2 ENSMUST00000172833 ENSMUSP00000133858 TRANSLATION protein_coding start/stop - 3 248.0 0.0 6.448 0.0 206.1 0.0 -4,-5 0.0001 5 -2.0 MINOR ENSMUSG00000033335 Dnm2 ENSMUST00000172763 - NO_TRANSLATION retained_intron ENSMUSG00000033335 Dnm2 ENSMUST00000172482 ENSMUSP00000133564 TRANSLATION protein_coding - CCDS57657.1 5 870.0 21.0 17.33 15.6 697.9 0.0 -4,-6 1.0 22 18.0 PRINCIPAL:4 ENSMUSG00000033335 Dnm2 ENSMUST00000165766 ENSMUSP00000128961 TRANSLATION protein_coding - CCDS57658.1 1 860.0 21.0 17.33 6.7 697.9 0.0 -4,-6 0.7855 21 15.56 MINOR ENSMUSG00000033335 Dnm2 ENSMUST00000174243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033335 Dnm2 ENSMUST00000174828 ENSMUSP00000133961 TRANSLATION nonsense_mediated_decay - - 5 69.0 7.0 1.1 0.0 26.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033335 Dnm2 ENSMUST00000172873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033335 Dnm2 ENSMUST00000173397 ENSMUSP00000134243 TRANSLATION protein_coding - CCDS57660.1 1 869.0 21.0 17.33 15.6 696.4 0.0 -4,-6 0.9987 22 18.0 ALTERNATIVE:1 ENSMUSG00000033335 Dnm2 ENSMUST00000072362 ENSMUSP00000072199 TRANSLATION protein_coding - - 1 870.0 21.0 17.33 15.6 696.4 0.0 -4,-6 0.8519 22 18.0 ALTERNATIVE:1 ENSMUSG00000033335 Dnm2 ENSMUST00000173299 - NO_TRANSLATION retained_intron ENSMUSG00000032066 Bco2 ENSMUST00000119103 ENSMUSP00000112727 TRANSLATION protein_coding - CCDS40620.1 5 532.0 4.0 8.04 0.4 379.9 0.0 -3,-6 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000079427 Mthfsl ENSMUST00000113110 ENSMUSP00000108734 TRANSLATION protein_coding - CCDS52881.1 1 203.0 8.0 3.5 10.5 206.4 0.0 -4,0 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000079427 Mthfsl ENSMUST00000186863 ENSMUSP00000150907 TRANSLATION protein_coding - - 2 146.0 8.0 2.0 0.0 158.6 0.0 -4,-5 0.0 2 12.132 MINOR ENSMUSG00000079427 Mthfsl ENSMUST00000185519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079427 Mthfsl ENSMUST00000186721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079427 Mthfsl ENSMUST00000191235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079427 Mthfsl ENSMUST00000190027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079427 Mthfsl ENSMUST00000186975 - NO_TRANSLATION retained_intron ENSMUSG00000043013 Onecut1 ENSMUST00000056006 ENSMUSP00000058020 TRANSLATION protein_coding - CCDS23339.1 1 465.0 0.0 1.4 11.9 146.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043013 Onecut1 ENSMUST00000160499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096424 Or8b38 ENSMUST00000081985 ENSMUSP00000080646 TRANSLATION protein_coding - CCDS22995.1 - 309.0 0.0 1.0 9.4 172.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034342 Cbl ENSMUST00000206147 ENSMUSP00000145827 TRANSLATION protein_coding - - 5 895.0 7.0 9.83 0.0 521.8 0.0 -4,-5 0.0735 14 11.402 MINOR ENSMUSG00000034342 Cbl ENSMUST00000206629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034342 Cbl ENSMUST00000206540 ENSMUSP00000145889 TRANSLATION protein_coding start - 5 79.0 2.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034342 Cbl ENSMUST00000205313 - NO_TRANSLATION retained_intron ENSMUSG00000034342 Cbl ENSMUST00000206125 - NO_TRANSLATION retained_intron ENSMUSG00000034342 Cbl ENSMUST00000206258 ENSMUSP00000145538 TRANSLATION protein_coding start - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000034342 Cbl ENSMUST00000037644 ENSMUSP00000041902 TRANSLATION protein_coding - - 1 869.0 7.0 10.83 0.1 550.8 0.0 -4,-5 0.1729 16 14.0 ALTERNATIVE:2 ENSMUSG00000034342 Cbl ENSMUST00000206163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034342 Cbl ENSMUST00000205755 ENSMUSP00000145791 TRANSLATION protein_coding stop - 5 51.0 0.0 1.33 0.0 66.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034342 Cbl ENSMUST00000206720 ENSMUSP00000146244 TRANSLATION protein_coding - CCDS40598.1 1 913.0 7.0 10.83 2.2 550.8 0.0 -4,-5 1.0 18 15.0 PRINCIPAL:2 ENSMUSG00000034342 Cbl ENSMUST00000205968 ENSMUSP00000146287 TRANSLATION protein_coding - - 1 896.0 7.0 10.33 0.0 546.3 0.0 -4,-5 0.0995 18 12.798 MINOR ENSMUSG00000032293 Ireb2 ENSMUST00000213482 - NO_TRANSLATION retained_intron ENSMUSG00000032293 Ireb2 ENSMUST00000214023 ENSMUSP00000149766 TRANSLATION protein_coding start/stop - 3 225.0 4.0 4.066 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032293 Ireb2 ENSMUST00000034843 ENSMUSP00000034843 TRANSLATION protein_coding - CCDS23196.1 1 963.0 15.0 14.39 12.0 146.2 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000032180 Tmed1 ENSMUST00000034698 ENSMUSP00000034698 TRANSLATION protein_coding - CCDS22904.1 1 227.0 0.0 2.95 9.8 149.8 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000032180 Tmed1 ENSMUST00000214576 ENSMUSP00000150154 TRANSLATION nonsense_mediated_decay - - 1 86.0 0.0 1.35 0.0 37.3 0.0 4,-1 0.0008 - -2.0 MINOR ENSMUSG00000032180 Tmed1 ENSMUST00000214285 ENSMUSP00000150642 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 0.6 0.0 0.0 0.0 4,-1 0.0023 - -2.0 MINOR ENSMUSG00000032180 Tmed1 ENSMUST00000213316 - NO_TRANSLATION retained_intron ENSMUSG00000032180 Tmed1 ENSMUST00000213167 ENSMUSP00000150532 TRANSLATION protein_coding start - 3 129.0 0.0 1.1 0.0 53.8 0.0 4,-1 0.0006 1 -2.0 MINOR ENSMUSG00000059890 Ube4a ENSMUST00000213890 ENSMUSP00000149477 TRANSLATION protein_coding stop - 2 197.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000059890 Ube4a ENSMUST00000213666 ENSMUSP00000150985 TRANSLATION protein_coding stop - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059890 Ube4a ENSMUST00000154287 ENSMUSP00000123668 TRANSLATION nonsense_mediated_decay - - 1 547.0 0.0 0.605 0.0 101.2 0.0 -4,-5 0.0013 8 -2.0 MINOR ENSMUSG00000059890 Ube4a ENSMUST00000214761 ENSMUSP00000151085 TRANSLATION protein_coding stop - 3 150.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000059890 Ube4a ENSMUST00000125642 ENSMUSP00000118951 TRANSLATION protein_coding stop - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059890 Ube4a ENSMUST00000117549 ENSMUSP00000112632 TRANSLATION protein_coding - CCDS85670.1 5 1085.0 0.0 3.999 0.1 618.2 0.0 -4,-5 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000059890 Ube4a ENSMUST00000155400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059890 Ube4a ENSMUST00000117506 ENSMUSP00000113346 TRANSLATION protein_coding - CCDS23122.2 1 1028.0 0.0 3.801 1.2 386.1 0.0 -4,-5 0.2371 19 6.604 MINOR ENSMUSG00000059890 Ube4a ENSMUST00000145657 ENSMUSP00000115311 TRANSLATION nonsense_mediated_decay - - 2 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059890 Ube4a ENSMUST00000213193 ENSMUSP00000150919 TRANSLATION protein_coding stop - 2 206.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000059890 Ube4a ENSMUST00000138559 ENSMUSP00000149791 TRANSLATION protein_coding - - 1 406.0 0.0 0.165 0.0 0.0 0.0 -4,-5 0.0 7 0.0 MINOR ENSMUSG00000006673 Qrich1 ENSMUST00000192932 ENSMUSP00000141215 TRANSLATION protein_coding stop - 2 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006673 Qrich1 ENSMUST00000112155 ENSMUSP00000107782 TRANSLATION protein_coding - CCDS52927.1 1 777.0 0.0 0.0 19.4 206.5 0.0 -4,-5 1.0 9 10.0 PRINCIPAL:1 ENSMUSG00000006673 Qrich1 ENSMUST00000194139 - NO_TRANSLATION retained_intron ENSMUSG00000006673 Qrich1 ENSMUST00000194387 - NO_TRANSLATION retained_intron ENSMUSG00000006673 Qrich1 ENSMUST00000194743 - NO_TRANSLATION retained_intron ENSMUSG00000006673 Qrich1 ENSMUST00000194385 ENSMUSP00000142211 TRANSLATION protein_coding - - 2 259.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 3 0.0 MINOR ENSMUSG00000006673 Qrich1 ENSMUST00000193258 ENSMUSP00000141267 TRANSLATION protein_coding - - 2 603.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0037 5 0.0 MINOR ENSMUSG00000006673 Qrich1 ENSMUST00000194741 ENSMUSP00000142233 TRANSLATION protein_coding stop - 1 122.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006673 Qrich1 ENSMUST00000195563 ENSMUSP00000141716 TRANSLATION protein_coding stop - 2 205.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000006673 Qrich1 ENSMUST00000192331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006673 Qrich1 ENSMUST00000193348 ENSMUSP00000141691 TRANSLATION protein_coding stop - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006673 Qrich1 ENSMUST00000192819 ENSMUSP00000142027 TRANSLATION protein_coding stop - 2 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006673 Qrich1 ENSMUST00000006851 ENSMUSP00000006851 TRANSLATION protein_coding - CCDS52927.1 1 777.0 0.0 0.0 19.4 206.5 0.0 -4,-5 1.0 9 10.0 PRINCIPAL:1 ENSMUSG00000006673 Qrich1 ENSMUST00000195513 ENSMUSP00000142025 TRANSLATION protein_coding stop - 2 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020257 Wdr82 ENSMUST00000216761 ENSMUSP00000151103 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 1.0 0.0 27.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020257 Wdr82 ENSMUST00000191147 - NO_TRANSLATION retained_intron ENSMUSG00000020257 Wdr82 ENSMUST00000190564 ENSMUSP00000140029 TRANSLATION nonsense_mediated_decay start - 3 51.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020257 Wdr82 ENSMUST00000214444 ENSMUSP00000150926 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 1.0 0.0 27.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020257 Wdr82 ENSMUST00000020490 ENSMUSP00000020490 TRANSLATION protein_coding - CCDS40754.1 1 313.0 0.0 8.91 30.2 69.9 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020257 Wdr82 ENSMUST00000217532 ENSMUSP00000149387 TRANSLATION nonsense_mediated_decay start - 5 85.0 0.0 1.25 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000042557 Sin3a ENSMUST00000163400 ENSMUSP00000126718 TRANSLATION protein_coding stop - 5 133.0 0.0 2.0 0.0 72.5 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000042557 Sin3a ENSMUST00000167963 - NO_TRANSLATION retained_intron ENSMUSG00000042557 Sin3a ENSMUST00000165927 - NO_TRANSLATION retained_intron ENSMUSG00000042557 Sin3a ENSMUST00000168678 ENSMUSP00000126601 TRANSLATION protein_coding - CCDS23216.1 1 1274.0 0.0 9.1 16.5 650.5 0.0 -4,-7 1.0 25 12.0 PRINCIPAL:4 ENSMUSG00000042557 Sin3a ENSMUST00000168502 ENSMUSP00000128956 TRANSLATION protein_coding - CCDS52805.1 5 1277.0 0.0 9.1 16.5 649.2 0.0 -4,-7 0.9928 25 12.0 ALTERNATIVE:1 ENSMUSG00000042557 Sin3a ENSMUST00000167715 ENSMUSP00000130641 TRANSLATION protein_coding - CCDS23216.1 5 1274.0 0.0 9.1 16.5 650.5 0.0 -4,-7 1.0 25 12.0 PRINCIPAL:4 ENSMUSG00000042557 Sin3a ENSMUST00000169879 ENSMUSP00000129062 TRANSLATION protein_coding stop - 5 102.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000042557 Sin3a ENSMUST00000168177 ENSMUSP00000130221 TRANSLATION protein_coding - CCDS52805.1 1 1277.0 0.0 9.1 16.5 649.2 0.0 -4,-7 0.9928 25 12.0 ALTERNATIVE:1 ENSMUSG00000042557 Sin3a ENSMUST00000049169 ENSMUSP00000045044 TRANSLATION protein_coding - CCDS23216.1 1 1274.0 0.0 9.1 16.5 650.5 0.0 -4,-7 1.0 25 12.0 PRINCIPAL:4 ENSMUSG00000043895 S1pr2 ENSMUST00000214218 ENSMUSP00000150113 TRANSLATION protein_coding stop - 3 16.0 0.0 0.1 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043895 S1pr2 ENSMUST00000214333 - NO_TRANSLATION retained_intron ENSMUSG00000043895 S1pr2 ENSMUST00000216499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043895 S1pr2 ENSMUST00000054197 ENSMUSP00000053394 TRANSLATION protein_coding - CCDS22888.1 1 352.0 0.0 0.7 14.5 101.5 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025240 Sacm1l ENSMUST00000215004 - NO_TRANSLATION retained_intron ENSMUSG00000025240 Sacm1l ENSMUST00000217045 ENSMUSP00000149326 TRANSLATION nonsense_mediated_decay - - 3 36.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025240 Sacm1l ENSMUST00000239083 ENSMUSP00000159019 TRANSLATION protein_coding - - - 609.0 0.0 16.58 4.4 312.5 2.0 -4,-5 0.2156 - -2.0 MINOR ENSMUSG00000025240 Sacm1l ENSMUST00000026270 ENSMUSP00000026270 TRANSLATION protein_coding - CCDS40816.1 1 587.0 0.0 16.58 30.9 312.5 2.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000025240 Sacm1l ENSMUST00000238984 ENSMUSP00000158880 TRANSLATION protein_coding - CCDS40816.1 - 587.0 0.0 16.58 30.9 312.5 2.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000025240 Sacm1l ENSMUST00000217089 - NO_TRANSLATION retained_intron ENSMUSG00000047619 Ddi1 ENSMUST00000051706 ENSMUSP00000053223 TRANSLATION protein_coding - CCDS40527.1 - 408.0 0.0 0.5 2.4 230.2 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000032268 Tmprss5 ENSMUST00000170246 ENSMUSP00000129482 TRANSLATION protein_coding - - 1 439.0 5.0 4.8 0.1 365.9 1.0 -4,-5 0.1567 3 13.0 ALTERNATIVE:2 ENSMUSG00000032268 Tmprss5 ENSMUST00000167095 ENSMUSP00000131650 TRANSLATION protein_coding - - 5 381.0 5.0 4.8 0.0 365.9 0.0 -4,-5 0.042 3 13.0 ALTERNATIVE:2 ENSMUSG00000032268 Tmprss5 ENSMUST00000165088 ENSMUSP00000132181 TRANSLATION protein_coding - - 1 455.0 5.0 4.8 3.2 365.9 3.0 -4,-6 1.0 3 14.0 PRINCIPAL:2 ENSMUSG00000032268 Tmprss5 ENSMUST00000166272 ENSMUSP00000130069 TRANSLATION nonsense_mediated_decay - - 1 110.0 0.0 0.0 0.0 0.0 3.0 -4,-6 0.0011 1 -2.0 MINOR ENSMUSG00000032268 Tmprss5 ENSMUST00000070390 ENSMUSP00000064527 TRANSLATION protein_coding - CCDS52789.1 1 445.0 5.0 4.8 0.1 365.9 3.0 -4,-5 0.4045 3 13.0 ALTERNATIVE:2 ENSMUSG00000032268 Tmprss5 ENSMUST00000171217 - NO_TRANSLATION retained_intron ENSMUSG00000032268 Tmprss5 ENSMUST00000170426 ENSMUSP00000128662 TRANSLATION nonsense_mediated_decay start - 1 84.0 0.0 0.4 0.0 89.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074179 Gsta5 ENSMUST00000121273 ENSMUSP00000113635 TRANSLATION protein_coding - CCDS52866.1 1 222.0 10.0 5.25 19.0 139.5 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000074179 Gsta5 ENSMUST00000126625 - NO_TRANSLATION retained_intron ENSMUSG00000074179 Gsta5 ENSMUST00000119823 ENSMUSP00000113211 TRANSLATION protein_coding - CCDS52866.1 5 222.0 10.0 5.25 19.0 139.5 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000050912 Tmem123 ENSMUST00000052865 ENSMUSP00000051966 TRANSLATION protein_coding - CCDS22810.1 1 195.0 0.0 1.0 0.0 42.2 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000050912 Tmem123 ENSMUST00000154371 ENSMUSP00000120727 TRANSLATION nonsense_mediated_decay - - 1 66.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.002 - -2.0 MINOR ENSMUSG00000050912 Tmem123 ENSMUST00000136904 ENSMUSP00000117742 TRANSLATION nonsense_mediated_decay - - 3 54.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.002 - -2.0 MINOR ENSMUSG00000032425 Zfp949 ENSMUST00000161232 ENSMUSP00000125222 TRANSLATION protein_coding stop - 2 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0368 - -2.0 MINOR ENSMUSG00000032425 Zfp949 ENSMUST00000160652 ENSMUSP00000124521 TRANSLATION protein_coding stop - 3 47.0 0.0 1.0 0.0 73.2 0.0 -4,-5 0.0502 - -2.0 MINOR ENSMUSG00000032425 Zfp949 ENSMUST00000162827 ENSMUSP00000125325 TRANSLATION protein_coding - CCDS52880.1 1 603.0 47.0 1.0 0.1 246.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000032425 Zfp949 ENSMUST00000162985 - NO_TRANSLATION retained_intron ENSMUSG00000032425 Zfp949 ENSMUST00000161458 ENSMUSP00000125017 TRANSLATION protein_coding - CCDS52880.1 1 603.0 47.0 1.0 0.1 246.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000046846 Spesp1 ENSMUST00000056949 ENSMUSP00000058522 TRANSLATION protein_coding - CCDS23263.1 1 399.0 0.0 0.0 0.0 503.6 0.0 4,-1 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000036777 Anln ENSMUST00000217010 - NO_TRANSLATION retained_intron ENSMUSG00000036777 Anln ENSMUST00000040912 ENSMUSP00000045873 TRANSLATION protein_coding - CCDS22927.1 1 1121.0 0.0 6.98 1.7 351.2 0.0 -4,-7 1.0 22 13.0 PRINCIPAL:1 ENSMUSG00000036777 Anln ENSMUST00000215006 ENSMUSP00000149721 TRANSLATION protein_coding start/stop - 5 239.0 0.0 4.28 0.0 92.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000036777 Anln ENSMUST00000215486 - NO_TRANSLATION retained_intron ENSMUSG00000036777 Anln ENSMUST00000216897 - NO_TRANSLATION retained_intron ENSMUSG00000036777 Anln ENSMUST00000216793 ENSMUSP00000149740 TRANSLATION protein_coding start - 2 122.0 0.0 1.86 0.0 71.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053641 Dennd4a ENSMUST00000217307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053641 Dennd4a ENSMUST00000213437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053641 Dennd4a ENSMUST00000216098 - NO_TRANSLATION retained_intron ENSMUSG00000053641 Dennd4a ENSMUST00000214001 - NO_TRANSLATION retained_intron ENSMUSG00000053641 Dennd4a ENSMUST00000214029 - NO_TRANSLATION retained_intron ENSMUSG00000053641 Dennd4a ENSMUST00000038890 ENSMUSP00000037915 TRANSLATION protein_coding - CCDS52834.1 5 1869.0 4.0 1.611 6.0 316.8 0.0 -4,-5 1.0 24 18.0 PRINCIPAL:1 ENSMUSG00000053641 Dennd4a ENSMUST00000215025 - NO_TRANSLATION retained_intron ENSMUSG00000053641 Dennd4a ENSMUST00000213744 - NO_TRANSLATION retained_intron ENSMUSG00000053641 Dennd4a ENSMUST00000213926 ENSMUSP00000150918 TRANSLATION protein_coding stop - 3 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036466 Megf11 ENSMUST00000093829 ENSMUSP00000091349 TRANSLATION protein_coding - CCDS23281.1 1 947.0 16.0 14.15 0.0 191.6 2.0 4,-1 0.1211 2 10.164 MINOR ENSMUSG00000036466 Megf11 ENSMUST00000124881 ENSMUSP00000120514 TRANSLATION protein_coding start/stop - 3 257.0 10.0 6.0 0.0 66.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036466 Megf11 ENSMUST00000118485 ENSMUSP00000114035 TRANSLATION protein_coding - - 5 1042.0 19.0 16.15 8.1 222.2 2.0 4,-1 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000036466 Megf11 ENSMUST00000153934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036466 Megf11 ENSMUST00000068967 ENSMUSP00000065353 TRANSLATION protein_coding - - 2 1091.0 19.0 16.15 5.2 222.2 2.0 4,-1 0.8095 2 19.776 MINOR ENSMUSG00000036466 Megf11 ENSMUST00000164113 ENSMUSP00000128672 TRANSLATION protein_coding - CCDS52833.1 5 1095.0 16.0 15.15 4.2 191.6 2.0 4,-1 0.5069 2 13.521 MINOR ENSMUSG00000036466 Megf11 ENSMUST00000148449 - NO_TRANSLATION retained_intron ENSMUSG00000036466 Megf11 ENSMUST00000147388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036466 Megf11 ENSMUST00000148963 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036466 Megf11 ENSMUST00000144383 - NO_TRANSLATION retained_intron ENSMUSG00000044820 AY074887 ENSMUST00000054018 ENSMUSP00000049861 TRANSLATION protein_coding - CCDS23198.1 - 132.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.881 - 0.0 PRINCIPAL:1 ENSMUSG00000038884 Shfl ENSMUST00000177067 - NO_TRANSLATION retained_intron ENSMUSG00000038884 Shfl ENSMUST00000176990 - NO_TRANSLATION retained_intron ENSMUSG00000038884 Shfl ENSMUST00000175820 - NO_TRANSLATION retained_intron ENSMUSG00000038884 Shfl ENSMUST00000176142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038884 Shfl ENSMUST00000043911 ENSMUSP00000045384 TRANSLATION protein_coding - CCDS22885.1 1 290.0 4.0 4.0 3.3 413.9 0.0 -4,-5 1.0 7 17.0 PRINCIPAL:1 ENSMUSG00000066607 Insyn1 ENSMUST00000085658 ENSMUSP00000082800 TRANSLATION protein_coding - CCDS23243.1 1 292.0 0.0 1.0 8.0 314.7 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000066607 Insyn1 ENSMUST00000217624 - NO_TRANSLATION retained_intron ENSMUSG00000066607 Insyn1 ENSMUST00000216294 ENSMUSP00000148914 TRANSLATION protein_coding - CCDS23243.1 1 292.0 0.0 1.0 8.0 314.7 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000050803 Or7e173 ENSMUST00000062248 ENSMUSP00000054864 TRANSLATION protein_coding - CCDS22868.1 - 312.0 0.0 1.0 1.3 160.4 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032437 Stt3b ENSMUST00000035010 ENSMUSP00000035010 TRANSLATION protein_coding - CCDS23599.1 1 823.0 0.0 13.3 5.3 491.2 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000032301 Psma4 ENSMUST00000171578 - NO_TRANSLATION retained_intron ENSMUSG00000032301 Psma4 ENSMUST00000034848 ENSMUSP00000034848 TRANSLATION protein_coding - CCDS40643.1 1 261.0 0.0 6.5 16.0 239.3 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000032301 Psma4 ENSMUST00000164679 - NO_TRANSLATION retained_intron ENSMUSG00000032301 Psma4 ENSMUST00000163960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032301 Psma4 ENSMUST00000172407 ENSMUSP00000126844 TRANSLATION protein_coding stop - 3 210.0 0.0 5.5 0.0 232.9 0.0 -4,-7 0.0088 7 -2.0 MINOR ENSMUSG00000032301 Psma4 ENSMUST00000169008 - NO_TRANSLATION retained_intron ENSMUSG00000032301 Psma4 ENSMUST00000171900 ENSMUSP00000132368 TRANSLATION protein_coding stop - 3 139.0 0.0 3.75 0.0 159.2 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000025243 Slc6a20b ENSMUST00000026273 ENSMUSP00000026273 TRANSLATION protein_coding - CCDS23661.1 1 635.0 0.0 10.8 0.4 569.4 12.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025243 Slc6a20b ENSMUST00000163397 ENSMUSP00000127422 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 0.8 0.0 47.1 2.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025243 Slc6a20b ENSMUST00000166800 - NO_TRANSLATION retained_intron ENSMUSG00000025243 Slc6a20b ENSMUST00000168824 ENSMUSP00000129307 TRANSLATION nonsense_mediated_decay - - 1 84.0 0.0 0.8 0.0 47.1 2.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025243 Slc6a20b ENSMUST00000164241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025243 Slc6a20b ENSMUST00000171122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032252 Glce ENSMUST00000185510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032252 Glce ENSMUST00000034785 ENSMUSP00000034785 TRANSLATION protein_coding - CCDS23262.1 1 618.0 0.0 3.0 14.5 251.3 0.0 -2,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000032252 Glce ENSMUST00000185675 ENSMUSP00000139949 TRANSLATION protein_coding - CCDS23262.1 1 618.0 0.0 3.0 14.5 251.3 0.0 -2,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000032252 Glce ENSMUST00000186514 - NO_TRANSLATION retained_intron ENSMUSG00000032252 Glce ENSMUST00000185873 ENSMUSP00000140671 TRANSLATION protein_coding stop - 3 44.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000062103 Or8d2 ENSMUST00000217350 ENSMUSP00000149849 TRANSLATION protein_coding - CCDS23029.1 5 308.0 0.0 1.0 3.4 182.1 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000062103 Or8d2 ENSMUST00000072977 ENSMUSP00000072744 TRANSLATION protein_coding - CCDS23029.1 - 308.0 0.0 1.0 3.4 182.1 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000046186 Cd109 ENSMUST00000093812 ENSMUSP00000091330 TRANSLATION protein_coding - CCDS23365.1 1 1442.0 2.0 13.0195 0.1 585.0 0.0 4,-3 1.0 27 14.0 PRINCIPAL:1 ENSMUSG00000046186 Cd109 ENSMUST00000163608 - NO_TRANSLATION retained_intron ENSMUSG00000086596 Susd5 ENSMUST00000135338 ENSMUSP00000128826 TRANSLATION protein_coding - CCDS52949.1 1 619.0 2.0 0.0 0.1 41.5 0.0 3,-1 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000032609 Klhdc8b ENSMUST00000193911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032609 Klhdc8b ENSMUST00000035232 ENSMUSP00000035232 TRANSLATION protein_coding - CCDS23526.1 1 354.0 0.0 5.33 20.4 112.7 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000032609 Klhdc8b ENSMUST00000192160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032609 Klhdc8b ENSMUST00000193159 - NO_TRANSLATION retained_intron ENSMUSG00000032609 Klhdc8b ENSMUST00000193286 ENSMUSP00000142325 TRANSLATION protein_coding - CCDS23526.1 1 354.0 0.0 5.33 20.4 112.7 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000032609 Klhdc8b ENSMUST00000192245 - NO_TRANSLATION retained_intron ENSMUSG00000032609 Klhdc8b ENSMUST00000195435 ENSMUSP00000141558 TRANSLATION protein_coding - - 5 308.0 0.0 3.73 3.7 105.5 0.0 -4,-2 0.1155 4 8.926 MINOR ENSMUSG00000032609 Klhdc8b ENSMUST00000193618 - NO_TRANSLATION retained_intron ENSMUSG00000032609 Klhdc8b ENSMUST00000194559 - NO_TRANSLATION retained_intron ENSMUSG00000032609 Klhdc8b ENSMUST00000195869 - NO_TRANSLATION retained_intron ENSMUSG00000032609 Klhdc8b ENSMUST00000192196 - NO_TRANSLATION retained_intron ENSMUSG00000032609 Klhdc8b ENSMUST00000193895 ENSMUSP00000141453 TRANSLATION protein_coding - CCDS23526.1 5 354.0 0.0 5.33 20.4 112.7 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000032609 Klhdc8b ENSMUST00000193331 - NO_TRANSLATION retained_intron ENSMUSG00000032609 Klhdc8b ENSMUST00000192210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032609 Klhdc8b ENSMUST00000194633 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025804 Ccr1 ENSMUST00000026911 ENSMUSP00000026911 TRANSLATION protein_coding - CCDS23666.1 1 355.0 0.0 1.0 14.1 171.5 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000041620 Mmp1b ENSMUST00000047888 ENSMUSP00000047261 TRANSLATION protein_coding - CCDS22805.1 1 463.0 20.0 8.2 0.3 320.8 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000025899 Alkbh8 ENSMUST00000212955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025899 Alkbh8 ENSMUST00000212154 ENSMUSP00000148438 TRANSLATION protein_coding stop - 3 142.0 0.0 3.194 0.0 94.2 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000025899 Alkbh8 ENSMUST00000212817 ENSMUSP00000148347 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 0.6 0.0 59.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025899 Alkbh8 ENSMUST00000211884 - NO_TRANSLATION retained_intron ENSMUSG00000025899 Alkbh8 ENSMUST00000165105 ENSMUSP00000125996 TRANSLATION protein_coding - CCDS22792.1 5 664.0 17.0 8.659 6.0 150.2 0.0 -4,-7 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000025899 Alkbh8 ENSMUST00000212294 ENSMUSP00000148380 TRANSLATION protein_coding - - 1 629.0 15.0 7.659 0.3 150.2 0.0 -4,-7 0.0834 9 14.67 MINOR ENSMUSG00000025899 Alkbh8 ENSMUST00000211933 ENSMUSP00000148653 TRANSLATION protein_coding - CCDS22792.1 1 664.0 17.0 8.659 6.0 150.2 0.0 -4,-7 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000025899 Alkbh8 ENSMUST00000212666 ENSMUSP00000148467 TRANSLATION protein_coding stop - 2 57.0 0.0 1.264 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025899 Alkbh8 ENSMUST00000212358 ENSMUSP00000148274 TRANSLATION nonsense_mediated_decay - - 1 199.0 0.0 3.869 0.0 94.2 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000025899 Alkbh8 ENSMUST00000053407 ENSMUSP00000061511 TRANSLATION protein_coding - CCDS22792.1 1 664.0 17.0 8.659 6.0 150.2 0.0 -4,-7 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000058820 Or8g17 ENSMUST00000073671 ENSMUSP00000073352 TRANSLATION protein_coding - CCDS23036.1 - 306.0 0.0 3.0 7.0 178.7 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058820 Or8g17 ENSMUST00000214410 ENSMUSP00000149294 TRANSLATION protein_coding - CCDS23036.1 5 306.0 0.0 3.0 7.0 178.7 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058820 Or8g17 ENSMUST00000215383 ENSMUSP00000151064 TRANSLATION protein_coding stop - 3 150.0 0.0 2.0 0.0 89.0 3.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000058820 Or8g17 ENSMUST00000214369 ENSMUSP00000150090 TRANSLATION protein_coding stop - 3 91.0 0.0 1.0 0.0 34.3 2.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000057193 Slc44a2 ENSMUST00000217461 ENSMUSP00000150147 TRANSLATION protein_coding - - 1 704.0 0.0 0.0 15.1 364.6 19.0 -4,-6 0.8373 17 3.1 PRINCIPAL:3 ENSMUSG00000057193 Slc44a2 ENSMUST00000034697 ENSMUSP00000034697 TRANSLATION protein_coding - CCDS22903.1 1 706.0 0.0 0.0 19.2 364.6 19.0 -4,-6 1.0 16 4.0 ALTERNATIVE:1 ENSMUSG00000057193 Slc44a2 ENSMUST00000213758 - NO_TRANSLATION retained_intron ENSMUSG00000057193 Slc44a2 ENSMUST00000213535 ENSMUSP00000149795 TRANSLATION protein_coding start - 3 111.0 0.0 0.0 0.0 68.9 4.0 -1,-5 0.0022 1 -2.0 MINOR ENSMUSG00000057193 Slc44a2 ENSMUST00000213499 - NO_TRANSLATION retained_intron ENSMUSG00000057193 Slc44a2 ENSMUST00000215528 - NO_TRANSLATION retained_intron ENSMUSG00000057193 Slc44a2 ENSMUST00000215574 ENSMUSP00000151150 TRANSLATION nonsense_mediated_decay - - 1 554.0 0.0 0.0 0.0 174.6 12.0 -4,-6 0.0045 15 -2.0 MINOR ENSMUSG00000057193 Slc44a2 ENSMUST00000214268 ENSMUSP00000150612 TRANSLATION protein_coding start - 5 170.0 0.0 0.0 0.0 172.3 7.0 -4,-7 0.0022 2 -2.0 MINOR ENSMUSG00000057193 Slc44a2 ENSMUST00000216266 - NO_TRANSLATION retained_intron ENSMUSG00000057193 Slc44a2 ENSMUST00000217453 - NO_TRANSLATION retained_intron ENSMUSG00000037742 Eef1a1 ENSMUST00000126614 - NO_TRANSLATION retained_intron ENSMUSG00000037742 Eef1a1 ENSMUST00000143570 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037742 Eef1a1 ENSMUST00000156988 ENSMUSP00000116821 TRANSLATION protein_coding stop - 1 186.0 11.0 3.0 0.0 172.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000037742 Eef1a1 ENSMUST00000042235 ENSMUSP00000042457 TRANSLATION protein_coding - CCDS40703.1 1 462.0 14.0 8.08 36.9 376.4 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000037742 Eef1a1 ENSMUST00000129380 - NO_TRANSLATION retained_intron ENSMUSG00000037742 Eef1a1 ENSMUST00000150960 - NO_TRANSLATION retained_intron ENSMUSG00000037742 Eef1a1 ENSMUST00000154207 ENSMUSP00000120438 TRANSLATION protein_coding stop - 5 249.0 14.0 4.75 0.0 186.5 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000037742 Eef1a1 ENSMUST00000144523 - NO_TRANSLATION retained_intron ENSMUSG00000035337 Uchl4 ENSMUST00000039011 ENSMUSP00000045208 TRANSLATION protein_coding - CCDS23278.1 - 233.0 4.0 1.0 34.0 218.7 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000031994 Adamts8 ENSMUST00000163037 ENSMUSP00000124848 TRANSLATION nonsense_mediated_decay start - 1 142.0 3.0 1.6 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031994 Adamts8 ENSMUST00000068135 ENSMUSP00000069644 TRANSLATION protein_coding - CCDS22946.1 1 905.0 18.0 8.24 0.4 286.5 0.0 2,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034007 Scaper ENSMUST00000216595 ENSMUSP00000149836 TRANSLATION protein_coding - - 1 905.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0258 11 0.0 MINOR ENSMUSG00000034007 Scaper ENSMUST00000214747 ENSMUSP00000149050 TRANSLATION protein_coding - - 5 1392.0 4.0 0.0 0.1 24.4 0.0 -4,-2 0.8963 13 6.0 PRINCIPAL:4 ENSMUSG00000034007 Scaper ENSMUST00000215323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034007 Scaper ENSMUST00000217647 ENSMUSP00000149750 TRANSLATION protein_coding - CCDS52802.1 5 1398.0 4.0 0.0 0.1 24.4 0.0 -4,-2 0.8123 13 6.0 ALTERNATIVE:2 ENSMUSG00000034007 Scaper ENSMUST00000037408 ENSMUSP00000043411 TRANSLATION protein_coding - CCDS52802.1 5 1398.0 4.0 0.0 0.1 24.4 0.0 -4,-2 0.8123 13 6.0 ALTERNATIVE:2 ENSMUSG00000058628 Or8b12b ENSMUST00000215128 ENSMUSP00000150684 TRANSLATION protein_coding - CCDS22987.1 5 310.0 0.0 1.0 12.5 164.5 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058628 Or8b12b ENSMUST00000080634 ENSMUSP00000079467 TRANSLATION protein_coding - CCDS22987.1 - 310.0 0.0 1.0 12.5 164.5 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035594 Chrna5 ENSMUST00000093844 ENSMUSP00000091365 TRANSLATION protein_coding - CCDS52800.1 1 438.0 0.0 3.7 0.0 455.3 4.0 -4,-5 0.3199 - 11.598 MINOR ENSMUSG00000035594 Chrna5 ENSMUST00000217408 ENSMUSP00000149366 TRANSLATION protein_coding - - 1 363.0 0.0 1.6 0.0 325.2 4.0 2,3 0.0103 - 1.398 MINOR ENSMUSG00000035594 Chrna5 ENSMUST00000213960 ENSMUSP00000150942 TRANSLATION protein_coding - - 1 467.0 0.0 3.9 2.2 455.3 4.0 1,3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000035594 Chrna5 ENSMUST00000216865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001943 Vsig2 ENSMUST00000213502 - NO_TRANSLATION retained_intron ENSMUSG00000001943 Vsig2 ENSMUST00000215710 - NO_TRANSLATION retained_intron ENSMUSG00000001943 Vsig2 ENSMUST00000213699 ENSMUSP00000149098 TRANSLATION protein_coding start - 2 91.0 0.0 1.5 0.0 24.7 2.0 -4,-7 0.0023 - -2.0 MINOR ENSMUSG00000001943 Vsig2 ENSMUST00000002008 ENSMUSP00000002008 TRANSLATION protein_coding - CCDS22980.1 1 328.0 0.0 4.65 0.0 108.9 2.0 2,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000001943 Vsig2 ENSMUST00000215957 ENSMUSP00000149703 TRANSLATION protein_coding - - 1 235.0 0.0 2.85 0.0 66.6 2.0 2,-2 0.0018 4 5.862 MINOR ENSMUSG00000001943 Vsig2 ENSMUST00000215271 ENSMUSP00000150115 TRANSLATION protein_coding - - 1 248.0 0.0 3.775 0.0 42.3 2.0 1,-3 0.0011 2 6.252 MINOR ENSMUSG00000032089 Il10ra ENSMUST00000176222 ENSMUSP00000135461 TRANSLATION protein_coding - CCDS85671.1 1 573.0 0.0 3.4 0.0 88.4 1.0 -1,-4 0.5146 - 11.718 MINOR ENSMUSG00000032089 Il10ra ENSMUST00000034594 ENSMUSP00000034594 TRANSLATION protein_coding - CCDS23131.1 1 575.0 0.0 3.4 1.3 92.8 1.0 0,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032089 Il10ra ENSMUST00000176808 ENSMUSP00000135361 TRANSLATION nonsense_mediated_decay - - 1 85.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0063 - -2.0 MINOR ENSMUSG00000063842 Or7e170 ENSMUST00000073765 ENSMUSP00000073437 TRANSLATION protein_coding - CCDS22866.1 - 306.0 0.0 1.0 5.4 176.2 4.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063842 Or7e170 ENSMUST00000079660 ENSMUSP00000078603 TRANSLATION protein_coding - CCDS22866.1 5 306.0 0.0 1.0 5.4 176.2 4.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049699 Ucn2 ENSMUST00000052724 ENSMUSP00000060405 TRANSLATION protein_coding - CCDS52929.1 - 113.0 0.0 0.0 6.2 55.8 0.0 4,-1 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000032593 Amigo3 ENSMUST00000085060 ENSMUSP00000082137 TRANSLATION protein_coding - CCDS23516.1 - 508.0 0.0 0.4 7.4 58.2 0.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032307 Ube2q2 ENSMUST00000122441 ENSMUSP00000112745 TRANSLATION protein_coding - CCDS85678.1 1 255.0 0.0 5.83 3.0 36.8 0.0 -4,-5 0.3317 2 12.594 MINOR ENSMUSG00000032307 Ube2q2 ENSMUST00000121677 ENSMUSP00000113336 TRANSLATION protein_coding - CCDS85677.1 5 343.0 0.0 5.83 6.4 36.8 0.0 -4,-5 0.7273 3 13.605 MINOR ENSMUSG00000032307 Ube2q2 ENSMUST00000148468 - NO_TRANSLATION retained_intron ENSMUSG00000032307 Ube2q2 ENSMUST00000059555 ENSMUSP00000059798 TRANSLATION protein_coding - CCDS23201.1 1 378.0 0.0 5.83 11.1 36.8 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000031936 Hephl1 ENSMUST00000159985 ENSMUSP00000124518 TRANSLATION protein_coding - CCDS52725.1 5 1159.0 36.0 16.14 9.5 167.6 0.0 2,-3 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000094269 Or8g32 ENSMUST00000078531 ENSMUSP00000077615 TRANSLATION protein_coding - CCDS23044.1 - 314.0 0.0 1.0 11.4 176.5 5.0 -4,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000094269 Or8g32 ENSMUST00000216107 ENSMUSP00000150976 TRANSLATION protein_coding - - 3 311.0 0.0 1.0 11.4 176.5 5.0 -4,-5 0.8691 - 11.0 ALTERNATIVE:1 ENSMUSG00000096109 Or8g18 ENSMUST00000213472 ENSMUSP00000149992 TRANSLATION protein_coding - - 2 311.0 0.0 1.0 11.4 170.5 6.0 -4,-7 0.8821 - 11.0 ALTERNATIVE:1 ENSMUSG00000096109 Or8g18 ENSMUST00000073248 ENSMUSP00000072979 TRANSLATION protein_coding - CCDS23041.1 - 314.0 0.0 1.0 11.4 170.5 6.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000032123 Dpagt1 ENSMUST00000054708 ENSMUSP00000056282 TRANSLATION protein_coding - CCDS23104.1 1 410.0 0.0 9.33 17.2 0.0 7.0 -2,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000032123 Dpagt1 ENSMUST00000216327 - NO_TRANSLATION retained_intron ENSMUSG00000032123 Dpagt1 ENSMUST00000217225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032123 Dpagt1 ENSMUST00000213461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032123 Dpagt1 ENSMUST00000215248 ENSMUSP00000150465 TRANSLATION nonsense_mediated_decay - - 5 106.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0106 - -2.0 MINOR ENSMUSG00000032123 Dpagt1 ENSMUST00000215050 ENSMUSP00000150178 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 1.75 0.0 0.0 1.0 -2,-5 0.0054 - -2.0 MINOR ENSMUSG00000042045 Sln ENSMUST00000048485 ENSMUSP00000036950 TRANSLATION protein_coding - CCDS40640.1 1 31.0 0.0 1.0 36.2 82.9 0.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025651 Uqcrc1 ENSMUST00000193332 - NO_TRANSLATION retained_intron ENSMUSG00000025651 Uqcrc1 ENSMUST00000192305 ENSMUSP00000141324 TRANSLATION protein_coding start - 2 41.0 1.0 0.5 0.0 0.0 0.0 -4,-6 0.0005 1 -2.0 MINOR ENSMUSG00000025651 Uqcrc1 ENSMUST00000194047 ENSMUSP00000141435 TRANSLATION protein_coding stop - 3 191.0 1.0 4.98 0.0 177.9 0.0 -4,0 0.0004 5 -2.0 MINOR ENSMUSG00000025651 Uqcrc1 ENSMUST00000192918 - NO_TRANSLATION retained_intron ENSMUSG00000025651 Uqcrc1 ENSMUST00000026743 ENSMUSP00000026743 TRANSLATION protein_coding - CCDS23540.1 1 480.0 1.0 12.86 29.6 287.0 0.0 -4,0 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000025651 Uqcrc1 ENSMUST00000194469 ENSMUSP00000141743 TRANSLATION protein_coding start/stop - 5 162.0 0.0 3.6 0.0 34.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025651 Uqcrc1 ENSMUST00000195387 - NO_TRANSLATION retained_intron ENSMUSG00000025651 Uqcrc1 ENSMUST00000195738 ENSMUSP00000141603 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000032328 Tmem30a ENSMUST00000120690 ENSMUSP00000114042 TRANSLATION protein_coding - - 5 328.0 0.0 6.0 1.1 290.0 2.0 -4,-5 0.0609 8 8.361 MINOR ENSMUSG00000032328 Tmem30a ENSMUST00000153815 - NO_TRANSLATION retained_intron ENSMUSG00000032328 Tmem30a ENSMUST00000130419 - NO_TRANSLATION retained_intron ENSMUSG00000032328 Tmem30a ENSMUST00000034878 ENSMUSP00000034878 TRANSLATION protein_coding - CCDS23367.1 1 364.0 0.0 7.0 12.3 317.8 2.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000053820 Bcl2a1c ENSMUST00000066460 ENSMUSP00000063842 TRANSLATION protein_coding - CCDS23591.1 - 128.0 0.0 1.0 0.0 53.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000003131 Pafah1b2 ENSMUST00000215427 ENSMUSP00000149409 TRANSLATION protein_coding stop - 5 97.0 2.0 3.16 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000003131 Pafah1b2 ENSMUST00000172450 ENSMUSP00000127851 TRANSLATION protein_coding - CCDS23139.1 1 229.0 5.0 6.49 31.0 57.1 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000003131 Pafah1b2 ENSMUST00000217636 ENSMUSP00000150013 TRANSLATION protein_coding stop - 2 78.0 2.0 2.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003131 Pafah1b2 ENSMUST00000215060 ENSMUSP00000151196 TRANSLATION protein_coding stop - 3 197.0 5.0 5.49 0.0 50.4 0.0 -4,-5 0.0006 4 -2.0 MINOR ENSMUSG00000003131 Pafah1b2 ENSMUST00000216334 ENSMUSP00000149998 TRANSLATION protein_coding stop - 5 22.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003131 Pafah1b2 ENSMUST00000214179 ENSMUSP00000149819 TRANSLATION protein_coding - CCDS23139.1 2 229.0 5.0 6.49 31.0 57.1 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000003131 Pafah1b2 ENSMUST00000217514 ENSMUSP00000148931 TRANSLATION protein_coding stop - 2 88.0 2.0 2.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003131 Pafah1b2 ENSMUST00000214996 - NO_TRANSLATION retained_intron ENSMUSG00000003131 Pafah1b2 ENSMUST00000213853 ENSMUSP00000149204 TRANSLATION protein_coding stop - 5 107.0 2.0 3.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037971 Cfap68 ENSMUST00000042576 ENSMUSP00000046890 TRANSLATION protein_coding - CCDS80996.1 1 182.0 0.0 1.75 0.0 302.1 0.0 -4,0 0.2114 1 6.666 MINOR ENSMUSG00000037971 Cfap68 ENSMUST00000177546 ENSMUSP00000134870 TRANSLATION protein_coding - - 3 89.0 0.0 1.75 0.0 113.1 0.0 -4,-5 0.0216 - 6.0 MINOR ENSMUSG00000037971 Cfap68 ENSMUST00000042468 ENSMUSP00000041803 TRANSLATION protein_coding - CCDS23173.1 1 166.0 0.0 1.75 0.7 316.8 0.0 -4,-7 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000037971 Cfap68 ENSMUST00000177022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037971 Cfap68 ENSMUST00000176682 - NO_TRANSLATION retained_intron ENSMUSG00000037971 Cfap68 ENSMUST00000176238 ENSMUSP00000135679 TRANSLATION protein_coding stop - 3 143.0 0.0 1.75 0.0 136.0 0.0 -4,-7 0.0254 - -2.0 MINOR ENSMUSG00000037971 Cfap68 ENSMUST00000176894 - NO_TRANSLATION retained_intron ENSMUSG00000037971 Cfap68 ENSMUST00000177142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037971 Cfap68 ENSMUST00000176160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032478 Nme6 ENSMUST00000196312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032478 Nme6 ENSMUST00000035053 ENSMUSP00000035053 TRANSLATION protein_coding - CCDS23558.1 1 189.0 11.0 6.24 0.0 127.6 0.0 -3,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000032478 Nme6 ENSMUST00000199203 - NO_TRANSLATION retained_intron ENSMUSG00000032478 Nme6 ENSMUST00000199758 ENSMUSP00000143591 TRANSLATION nonsense_mediated_decay - - 5 84.0 2.0 2.0 0.0 35.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000032478 Nme6 ENSMUST00000196762 - NO_TRANSLATION retained_intron ENSMUSG00000032478 Nme6 ENSMUST00000200345 ENSMUSP00000142392 TRANSLATION protein_coding stop - 5 115.0 7.0 3.83 0.0 89.0 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000032478 Nme6 ENSMUST00000197627 ENSMUSP00000142778 TRANSLATION protein_coding - - 3 110.0 5.0 2.7 0.0 53.8 0.0 -3,-6 0.0 - 3.57 MINOR ENSMUSG00000032478 Nme6 ENSMUST00000200660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032478 Nme6 ENSMUST00000200005 ENSMUSP00000142609 TRANSLATION protein_coding stop - 5 157.0 11.0 5.24 0.0 127.6 0.0 -3,-6 0.0073 1 -2.0 MINOR ENSMUSG00000032478 Nme6 ENSMUST00000200091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032478 Nme6 ENSMUST00000196797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032478 Nme6 ENSMUST00000196425 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032478 Nme6 ENSMUST00000199181 - NO_TRANSLATION retained_intron ENSMUSG00000032478 Nme6 ENSMUST00000198201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032478 Nme6 ENSMUST00000200468 ENSMUSP00000143021 TRANSLATION protein_coding - CCDS23558.1 2 189.0 11.0 6.24 0.0 127.6 0.0 -3,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000059974 Ntm ENSMUST00000126044 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059974 Ntm ENSMUST00000115237 ENSMUSP00000110892 TRANSLATION protein_coding - - 1 344.0 0.0 6.25 10.0 152.1 0.0 1,-3 0.9206 6 15.0 PRINCIPAL:1 ENSMUSG00000059974 Ntm ENSMUST00000140118 ENSMUSP00000114810 TRANSLATION protein_coding start - 5 179.0 0.0 3.698 0.0 57.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000059974 Ntm ENSMUST00000075069 ENSMUSP00000074578 TRANSLATION protein_coding - CCDS22943.1 1 344.0 0.0 6.25 5.1 152.1 0.0 -2,-3 1.0 6 13.368 MINOR ENSMUSG00000059974 Ntm ENSMUST00000146651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059974 Ntm ENSMUST00000148606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059974 Ntm ENSMUST00000124119 - NO_TRANSLATION retained_intron ENSMUSG00000059974 Ntm ENSMUST00000155308 ENSMUSP00000119030 TRANSLATION protein_coding start - 5 191.0 0.0 4.098 0.0 57.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000059974 Ntm ENSMUST00000152513 - NO_TRANSLATION retained_intron ENSMUSG00000059974 Ntm ENSMUST00000115236 ENSMUSP00000110891 TRANSLATION protein_coding - - 5 316.0 0.0 5.75 2.1 152.1 0.0 1,-3 0.1843 6 11.364 MINOR ENSMUSG00000059974 Ntm ENSMUST00000151977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015354 Pcolce2 ENSMUST00000015498 ENSMUSP00000015498 TRANSLATION protein_coding - CCDS23410.1 1 414.0 8.0 5.88 3.5 258.1 0.0 1,-2 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000015354 Pcolce2 ENSMUST00000151210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061457 Or7h8 ENSMUST00000073122 ENSMUSP00000072865 TRANSLATION protein_coding - CCDS22873.1 - 311.0 0.0 1.0 6.6 174.8 0.0 -3,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000093901 Or8c15 ENSMUST00000093867 ENSMUSP00000091390 TRANSLATION protein_coding - CCDS23000.1 - 312.0 0.0 4.0 12.5 154.6 5.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000093901 Or8c15 ENSMUST00000212815 ENSMUSP00000148828 TRANSLATION protein_coding start - 5 164.0 0.0 1.2 0.0 74.5 1.0 -2,-4 0.0016 - -2.0 MINOR ENSMUSG00000093901 Or8c15 ENSMUST00000211975 ENSMUSP00000148719 TRANSLATION protein_coding - - 5 310.0 0.0 4.0 12.5 154.6 5.0 -4,-7 0.8858 - 11.0 ALTERNATIVE:1 ENSMUSG00000094588 Or8c20 ENSMUST00000216304 ENSMUSP00000151067 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 11.5 160.3 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094588 Or8c20 ENSMUST00000217063 ENSMUSP00000149554 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 11.5 160.3 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094588 Or8c20 ENSMUST00000076504 ENSMUSP00000075824 TRANSLATION protein_coding - CCDS23005.1 - 316.0 0.0 1.0 4.5 160.3 8.0 -4,-6 0.694 - 12.999 MINOR ENSMUSG00000059820 Nkapd1 ENSMUST00000145139 ENSMUSP00000115196 TRANSLATION protein_coding - - 2 125.0 0.0 0.0 0.0 61.3 0.0 -4,-2 0.0003 1 4.464 MINOR ENSMUSG00000059820 Nkapd1 ENSMUST00000155435 ENSMUSP00000121198 TRANSLATION protein_coding stop - 3 214.0 0.0 0.0 0.0 82.4 0.0 -4,-2 0.0318 1 -2.0 MINOR ENSMUSG00000059820 Nkapd1 ENSMUST00000131351 ENSMUSP00000123319 TRANSLATION protein_coding - CCDS23166.2 1 292.0 0.0 0.0 8.7 82.4 0.0 -4,-2 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000059820 Nkapd1 ENSMUST00000171462 ENSMUSP00000133259 TRANSLATION protein_coding - CCDS23166.2 3 292.0 0.0 0.0 8.7 82.4 0.0 -4,-2 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000059820 Nkapd1 ENSMUST00000147671 ENSMUSP00000117265 TRANSLATION protein_coding stop - 3 203.0 0.0 0.0 0.0 82.4 0.0 -4,-2 0.0287 1 -2.0 MINOR ENSMUSG00000032515 Csrnp1 ENSMUST00000216929 ENSMUSP00000149661 TRANSLATION protein_coding stop - 5 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032515 Csrnp1 ENSMUST00000214058 ENSMUSP00000150628 TRANSLATION protein_coding - CCDS23620.1 1 583.0 8.0 0.0 5.4 301.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032515 Csrnp1 ENSMUST00000035101 ENSMUSP00000035101 TRANSLATION protein_coding - CCDS23620.1 1 583.0 8.0 0.0 5.4 301.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032515 Csrnp1 ENSMUST00000215916 ENSMUSP00000149214 TRANSLATION protein_coding - CCDS23620.1 1 583.0 8.0 0.0 5.4 301.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032515 Csrnp1 ENSMUST00000213936 ENSMUSP00000149632 TRANSLATION protein_coding stop - 2 119.0 0.0 0.0 0.0 59.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032324 Tspan3 ENSMUST00000214970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032324 Tspan3 ENSMUST00000034876 ENSMUSP00000034876 TRANSLATION protein_coding - CCDS23207.1 1 253.0 0.0 3.87 35.5 174.8 6.0 -1,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032324 Tspan3 ENSMUST00000215906 ENSMUSP00000149496 TRANSLATION protein_coding - - 3 256.0 0.0 3.27 0.0 160.6 6.0 -4,-2 0.0262 1 9.948 MINOR ENSMUSG00000032324 Tspan3 ENSMUST00000216320 ENSMUSP00000148864 TRANSLATION protein_coding stop - 3 201.0 0.0 2.1 0.0 111.8 4.0 -4,-7 0.0044 - -2.0 MINOR ENSMUSG00000032324 Tspan3 ENSMUST00000216317 - NO_TRANSLATION retained_intron ENSMUSG00000010057 Nprl2 ENSMUST00000192951 - NO_TRANSLATION retained_intron ENSMUSG00000010057 Nprl2 ENSMUST00000194848 - NO_TRANSLATION retained_intron ENSMUSG00000010057 Nprl2 ENSMUST00000010201 ENSMUSP00000010201 TRANSLATION protein_coding - CCDS23492.1 1 380.0 0.0 6.08 29.6 301.0 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000010057 Nprl2 ENSMUST00000195370 ENSMUSP00000141746 TRANSLATION nonsense_mediated_decay - - 3 163.0 0.0 2.75 0.0 108.7 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000010057 Nprl2 ENSMUST00000193628 - NO_TRANSLATION retained_intron ENSMUSG00000032397 Tipin ENSMUST00000215031 ENSMUSP00000150909 TRANSLATION protein_coding stop - 2 93.0 0.0 0.9 0.0 31.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032397 Tipin ENSMUST00000213165 ENSMUSP00000150808 TRANSLATION protein_coding stop - 2 111.0 0.0 1.0 0.0 62.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032397 Tipin ENSMUST00000216594 ENSMUSP00000149833 TRANSLATION protein_coding - CCDS23279.1 1 278.0 0.0 1.75 0.1 114.7 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000032397 Tipin ENSMUST00000213289 ENSMUSP00000150350 TRANSLATION protein_coding stop - 2 93.0 0.0 0.9 0.0 31.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032397 Tipin ENSMUST00000034964 ENSMUSP00000034964 TRANSLATION protein_coding - CCDS23279.1 1 278.0 0.0 1.75 0.1 114.7 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000032064 Dixdc1 ENSMUST00000124424 - NO_TRANSLATION retained_intron ENSMUSG00000032064 Dixdc1 ENSMUST00000149717 - NO_TRANSLATION retained_intron ENSMUSG00000032064 Dixdc1 ENSMUST00000120622 ENSMUSP00000113934 TRANSLATION protein_coding - - 1 343.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 5 0.0 MINOR ENSMUSG00000032064 Dixdc1 ENSMUST00000117646 ENSMUSP00000112431 TRANSLATION protein_coding - - 5 685.0 0.0 4.35 10.3 171.8 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000032064 Dixdc1 ENSMUST00000141919 - NO_TRANSLATION retained_intron ENSMUSG00000032064 Dixdc1 ENSMUST00000119449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032064 Dixdc1 ENSMUST00000117093 ENSMUSP00000112654 TRANSLATION protein_coding - - 1 116.0 0.0 0.8 0.0 34.6 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000032064 Dixdc1 ENSMUST00000121634 ENSMUSP00000113089 TRANSLATION protein_coding - CCDS80995.1 5 710.0 0.0 4.35 0.0 163.1 0.0 -4,-2 0.2135 9 11.478 MINOR ENSMUSG00000032064 Dixdc1 ENSMUST00000154315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032064 Dixdc1 ENSMUST00000034566 ENSMUSP00000034566 TRANSLATION protein_coding - CCDS23169.1 1 711.0 0.0 4.35 0.3 163.3 0.0 -4,-6 0.2439 9 11.49 MINOR ENSMUSG00000032064 Dixdc1 ENSMUST00000118707 ENSMUSP00000113907 TRANSLATION protein_coding - - 1 117.0 0.0 0.8 0.0 34.6 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000032064 Dixdc1 ENSMUST00000151109 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040541 Tmem225 ENSMUST00000238613 ENSMUSP00000158671 TRANSLATION protein_coding stop - - 127.0 0.0 2.0 0.0 0.0 4.0 -4,-5 0.0298 - -2.0 MINOR ENSMUSG00000040541 Tmem225 ENSMUST00000046333 ENSMUSP00000036816 TRANSLATION protein_coding - CCDS52774.1 1 230.0 0.0 3.5 0.4 0.0 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000042496 Prdm10 ENSMUST00000136144 - NO_TRANSLATION retained_intron ENSMUSG00000042496 Prdm10 ENSMUST00000215499 ENSMUSP00000149526 TRANSLATION protein_coding - - 5 1115.0 42.0 5.556 0.0 273.9 0.0 -4,-5 0.8906 5 17.7 PRINCIPAL:1 ENSMUSG00000042496 Prdm10 ENSMUST00000215847 ENSMUSP00000149699 TRANSLATION protein_coding - - 5 1172.0 41.0 5.706 0.0 257.9 0.0 -4,-5 0.2394 5 16.374 MINOR ENSMUSG00000042496 Prdm10 ENSMUST00000074510 ENSMUSP00000074104 TRANSLATION protein_coding - CCDS40570.1 5 1135.0 41.0 5.706 0.0 257.9 0.0 -1,-5 0.5828 5 16.374 MINOR ENSMUSG00000042496 Prdm10 ENSMUST00000117389 ENSMUSP00000112588 TRANSLATION protein_coding - - 1 341.0 4.0 1.48 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000094995 Pate3 ENSMUST00000178236 ENSMUSP00000136668 TRANSLATION protein_coding - CCDS52755.1 1 98.0 0.0 2.0 7.7 0.0 0.0 3,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000057191 AB124611 ENSMUST00000086361 ENSMUSP00000083547 TRANSLATION protein_coding - - 1 222.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.6217 - 0.0 PRINCIPAL:2 ENSMUSG00000057191 AB124611 ENSMUST00000173769 ENSMUSP00000134056 TRANSLATION protein_coding - - 1 192.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0778 - 0.0 ALTERNATIVE:2 ENSMUSG00000057191 AB124611 ENSMUST00000076326 ENSMUSP00000075665 TRANSLATION nonsense_mediated_decay - - 1 90.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.1091 - -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000208581 ENSMUSP00000146436 TRANSLATION protein_coding stop - 5 173.0 0.0 4.745 0.0 178.8 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000137655 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000144253 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000192627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032604 Qars ENSMUST00000006838 ENSMUSP00000006838 TRANSLATION protein_coding - CCDS23530.1 1 775.0 3.0 22.375 9.6 817.6 0.0 -4,-5 1.0 36 18.0 PRINCIPAL:1 ENSMUSG00000032604 Qars ENSMUST00000207062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032604 Qars ENSMUST00000208962 ENSMUSP00000146836 TRANSLATION nonsense_mediated_decay start - 5 79.0 0.0 1.705 0.0 45.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000207862 ENSMUSP00000147248 TRANSLATION protein_coding stop - 5 182.0 0.0 5.24 0.0 189.3 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000141780 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000207713 ENSMUSP00000146346 TRANSLATION protein_coding start/stop - 5 246.0 0.0 7.568 0.0 243.3 0.0 -4,-5 0.0001 13 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000207790 ENSMUSP00000146920 TRANSLATION nonsense_mediated_decay start - 5 121.0 0.0 2.837 0.0 76.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000136293 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000207810 ENSMUSP00000146612 TRANSLATION protein_coding stop - 5 341.0 0.0 10.28 0.0 370.3 0.0 -4,-5 0.0 16 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000208102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032604 Qars ENSMUST00000134939 ENSMUSP00000122918 TRANSLATION protein_coding - - 5 751.0 3.0 21.375 0.0 753.5 0.0 -4,-5 0.0806 34 9.156 MINOR ENSMUSG00000032604 Qars ENSMUST00000194045 ENSMUSP00000142223 TRANSLATION nonsense_mediated_decay start - 3 152.0 0.0 4.087 0.0 95.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000208069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032604 Qars ENSMUST00000141903 ENSMUSP00000121146 TRANSLATION protein_coding start/stop - 5 154.0 2.0 4.08 0.0 171.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000207180 ENSMUSP00000147212 TRANSLATION nonsense_mediated_decay start - 5 134.0 0.0 3.535 0.0 85.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000208162 ENSMUSP00000146356 TRANSLATION nonsense_mediated_decay - - 5 67.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000192659 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000207734 ENSMUSP00000147195 TRANSLATION nonsense_mediated_decay start - 5 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0068 - -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000208214 ENSMUSP00000147211 TRANSLATION nonsense_mediated_decay - - 5 100.0 0.0 2.25 0.0 46.4 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000208177 ENSMUSP00000146774 TRANSLATION protein_coding start - 5 153.0 0.0 4.035 0.0 86.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000208074 ENSMUSP00000147017 TRANSLATION nonsense_mediated_decay start - 5 117.0 1.0 3.608 0.0 152.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000154324 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000208506 ENSMUSP00000146888 TRANSLATION nonsense_mediated_decay start - 5 160.0 0.0 4.365 0.0 114.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000131005 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000137980 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000141201 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000207947 ENSMUSP00000146941 TRANSLATION nonsense_mediated_decay - - 5 273.0 0.0 7.04 0.0 237.3 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000032604 Qars ENSMUST00000154311 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000192065 - NO_TRANSLATION retained_intron ENSMUSG00000032604 Qars ENSMUST00000207126 - NO_TRANSLATION retained_intron ENSMUSG00000091411 Gm5916 ENSMUST00000168452 ENSMUSP00000125855 TRANSLATION protein_coding - - 1 102.0 0.0 2.0 0.0 0.0 0.0 3,-2 0.7382 - 6.0 PRINCIPAL:1 ENSMUSG00000032334 Loxl1 ENSMUST00000061799 ENSMUSP00000057406 TRANSLATION protein_coding - CCDS52813.1 1 607.0 0.0 5.0 0.4 315.5 0.0 1,-3 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000096472 Cdkn2d ENSMUST00000215619 ENSMUSP00000150701 TRANSLATION protein_coding - CCDS22901.1 1 166.0 0.0 2.0 12.9 38.4 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000096472 Cdkn2d ENSMUST00000213407 ENSMUSP00000149499 TRANSLATION protein_coding stop - 2 163.0 0.0 2.0 9.1 38.4 0.0 -4,-5 0.772 4 -2.0 MINOR ENSMUSG00000096472 Cdkn2d ENSMUST00000086374 ENSMUSP00000083561 TRANSLATION protein_coding - - 1 50.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - 3.0 MINOR ENSMUSG00000048501 Or8g24 ENSMUST00000056499 ENSMUSP00000055053 TRANSLATION protein_coding - CCDS23038.1 - 315.0 0.0 1.0 8.1 165.0 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049624 Slc17a5 ENSMUST00000119213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049624 Slc17a5 ENSMUST00000052441 ENSMUSP00000056182 TRANSLATION protein_coding - CCDS23364.1 1 495.0 0.0 7.3 7.4 203.3 13.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000049624 Slc17a5 ENSMUST00000117645 ENSMUSP00000113003 TRANSLATION protein_coding - CCDS72283.1 1 469.0 0.0 6.7 0.0 166.6 12.0 -4,-5 0.0308 2 8.598 MINOR ENSMUSG00000032000 Birc3 ENSMUST00000115673 ENSMUSP00000111337 TRANSLATION protein_coding stop - 2 168.0 4.0 0.6 0.0 75.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032000 Birc3 ENSMUST00000159672 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032000 Birc3 ENSMUST00000159323 ENSMUSP00000125652 TRANSLATION protein_coding stop - 2 175.0 4.0 0.93 0.0 75.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032000 Birc3 ENSMUST00000161642 ENSMUSP00000125512 TRANSLATION nonsense_mediated_decay start - 5 138.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032000 Birc3 ENSMUST00000013949 ENSMUSP00000013949 TRANSLATION protein_coding - CCDS22812.2 1 602.0 20.0 7.28 4.1 346.3 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000032000 Birc3 ENSMUST00000161099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032000 Birc3 ENSMUST00000115672 ENSMUSP00000111336 TRANSLATION protein_coding - - 1 376.0 12.0 3.53 0.0 227.4 0.0 -4,-5 0.0 2 0.666 MINOR ENSMUSG00000032202 Rab27a ENSMUST00000184032 - NO_TRANSLATION retained_intron ENSMUSG00000032202 Rab27a ENSMUST00000184146 ENSMUSP00000139310 TRANSLATION protein_coding - CCDS23335.1 1 221.0 19.0 4.75 31.8 190.7 0.0 -4,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000032202 Rab27a ENSMUST00000034722 ENSMUSP00000034722 TRANSLATION protein_coding - CCDS23335.1 1 221.0 19.0 4.75 31.8 190.7 0.0 -4,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000032202 Rab27a ENSMUST00000184575 - NO_TRANSLATION retained_intron ENSMUSG00000056271 Lman1l ENSMUST00000093832 ENSMUSP00000091352 TRANSLATION protein_coding - CCDS52810.1 1 505.0 0.0 4.515 0.0 172.5 0.0 1,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000056271 Lman1l ENSMUST00000044937 ENSMUSP00000041631 TRANSLATION nonsense_mediated_decay - - 2 374.0 0.0 4.515 0.0 172.5 0.0 1,-2 0.1723 5 -2.0 MINOR ENSMUSG00000032179 Bmp5 ENSMUST00000012281 ENSMUSP00000012281 TRANSLATION protein_coding - CCDS23348.1 1 454.0 0.0 2.95 14.0 435.0 0.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032179 Bmp5 ENSMUST00000137213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032040 Dcps ENSMUST00000034539 ENSMUSP00000034539 TRANSLATION protein_coding - CCDS22957.1 1 338.0 6.0 7.21 12.1 182.0 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000032040 Dcps ENSMUST00000119847 ENSMUSP00000113284 TRANSLATION protein_coding - - 1 291.0 0.0 6.21 0.0 131.9 0.0 -4,-5 0.0005 8 6.996 MINOR ENSMUSG00000032040 Dcps ENSMUST00000155139 ENSMUSP00000121041 TRANSLATION nonsense_mediated_decay - - 2 102.0 0.0 1.55 0.0 31.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032012 Nectin1 ENSMUST00000239313 ENSMUSP00000159280 TRANSLATION protein_coding - - - 447.0 0.0 5.025 0.0 149.8 1.0 4,-2 0.1298 7 12.0 MINOR ENSMUSG00000032012 Nectin1 ENSMUST00000180221 - NO_TRANSLATION retained_intron ENSMUSG00000032012 Nectin1 ENSMUST00000216893 ENSMUSP00000149131 TRANSLATION protein_coding start - 5 114.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000032012 Nectin1 ENSMUST00000216905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032012 Nectin1 ENSMUST00000034510 ENSMUSP00000034510 TRANSLATION protein_coding - CCDS23092.1 1 515.0 0.0 4.33 10.4 149.5 1.0 4,-2 1.0 9 13.59 PRINCIPAL:1 ENSMUSG00000025245 Lztfl1 ENSMUST00000214521 - NO_TRANSLATION retained_intron ENSMUSG00000025245 Lztfl1 ENSMUST00000172067 - NO_TRANSLATION retained_intron ENSMUSG00000025245 Lztfl1 ENSMUST00000168923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025245 Lztfl1 ENSMUST00000165799 - NO_TRANSLATION retained_intron ENSMUSG00000025245 Lztfl1 ENSMUST00000026274 ENSMUSP00000026274 TRANSLATION protein_coding - CCDS40818.1 1 299.0 0.0 0.0 34.7 410.3 0.0 -4,-5 1.0 11 10.0 PRINCIPAL:1 ENSMUSG00000025245 Lztfl1 ENSMUST00000165754 ENSMUSP00000150089 TRANSLATION protein_coding start - 1 290.0 0.0 0.0 0.0 363.4 0.0 -4,0 0.0249 9 -2.0 MINOR ENSMUSG00000025245 Lztfl1 ENSMUST00000217171 - NO_TRANSLATION retained_intron ENSMUSG00000025245 Lztfl1 ENSMUST00000163207 ENSMUSP00000150134 TRANSLATION protein_coding start/stop - 2 207.0 0.0 0.0 0.0 285.1 0.0 -4,-2 0.0007 7 -2.0 MINOR ENSMUSG00000025245 Lztfl1 ENSMUST00000166184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025245 Lztfl1 ENSMUST00000098258 ENSMUSP00000095858 TRANSLATION protein_coding start - 5 218.0 0.0 0.0 0.0 284.9 0.0 -4,-5 0.0022 8 -2.0 MINOR ENSMUSG00000025245 Lztfl1 ENSMUST00000166097 ENSMUSP00000130872 TRANSLATION nonsense_mediated_decay - - 5 134.0 0.0 0.0 0.0 209.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000025245 Lztfl1 ENSMUST00000168921 ENSMUSP00000132359 TRANSLATION protein_coding start - 5 235.0 0.0 0.0 0.0 187.0 0.0 -4,-5 0.0004 9 -2.0 MINOR ENSMUSG00000019039 Dalrd3 ENSMUST00000191881 - NO_TRANSLATION retained_intron ENSMUSG00000019039 Dalrd3 ENSMUST00000019183 ENSMUSP00000019183 TRANSLATION protein_coding - CCDS40769.1 1 538.0 0.0 0.0 3.8 78.3 0.0 -4,-5 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000019039 Dalrd3 ENSMUST00000192651 - NO_TRANSLATION retained_intron ENSMUSG00000019039 Dalrd3 ENSMUST00000193846 - NO_TRANSLATION retained_intron ENSMUSG00000019039 Dalrd3 ENSMUST00000195249 ENSMUSP00000141451 TRANSLATION nonsense_mediated_decay - - 3 171.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019039 Dalrd3 ENSMUST00000191897 - NO_TRANSLATION retained_intron ENSMUSG00000019039 Dalrd3 ENSMUST00000192518 ENSMUSP00000142061 TRANSLATION protein_coding start - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019039 Dalrd3 ENSMUST00000193427 ENSMUSP00000141748 TRANSLATION protein_coding start/stop - 3 193.0 0.0 0.0 0.0 41.8 0.0 -4,-6 0.0004 2 -2.0 MINOR ENSMUSG00000019039 Dalrd3 ENSMUST00000193044 - NO_TRANSLATION retained_intron ENSMUSG00000023262 Acy1 ENSMUST00000190851 - NO_TRANSLATION retained_intron ENSMUSG00000023262 Acy1 ENSMUST00000216400 ENSMUSP00000149636 TRANSLATION protein_coding - - 5 336.0 6.0 9.57 1.0 88.8 0.0 -4,-5 0.0062 12 5.37 MINOR ENSMUSG00000023262 Acy1 ENSMUST00000189097 - NO_TRANSLATION retained_intron ENSMUSG00000023262 Acy1 ENSMUST00000190803 ENSMUSP00000139931 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023262 Acy1 ENSMUST00000024031 ENSMUSP00000024031 TRANSLATION protein_coding - CCDS23477.1 1 408.0 10.0 11.82 11.0 179.9 0.0 -4,-5 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000023262 Acy1 ENSMUST00000215395 ENSMUSP00000149394 TRANSLATION protein_coding - - 5 343.0 8.0 9.99 1.0 129.0 0.0 -4,-5 0.0056 12 9.954 MINOR ENSMUSG00000023262 Acy1 ENSMUST00000187324 - NO_TRANSLATION retained_intron ENSMUSG00000023262 Acy1 ENSMUST00000190972 ENSMUSP00000139953 TRANSLATION protein_coding stop - 3 219.0 7.0 6.66 0.0 87.1 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000023262 Acy1 ENSMUST00000215506 ENSMUSP00000150039 TRANSLATION nonsense_mediated_decay - - 5 201.0 5.0 6.24 0.0 86.9 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000023262 Acy1 ENSMUST00000190900 ENSMUSP00000140582 TRANSLATION protein_coding stop - 3 50.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000023262 Acy1 ENSMUST00000217531 ENSMUSP00000149516 TRANSLATION protein_coding start/stop - 5 155.0 4.0 4.13 0.0 47.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000023262 Acy1 ENSMUST00000214275 ENSMUSP00000149789 TRANSLATION protein_coding - - 5 373.0 9.0 10.82 1.1 162.1 0.0 -4,-5 0.0165 16 14.298 MINOR ENSMUSG00000035878 Hykk ENSMUST00000124295 - NO_TRANSLATION retained_intron ENSMUSG00000035878 Hykk ENSMUST00000135648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035878 Hykk ENSMUST00000039742 ENSMUSP00000039980 TRANSLATION protein_coding - CCDS23197.1 1 376.0 17.0 4.0 9.2 123.3 0.0 -4,-7 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000035878 Hykk ENSMUST00000125983 - NO_TRANSLATION retained_intron ENSMUSG00000037410 Tbc1d2b ENSMUST00000144646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037410 Tbc1d2b ENSMUST00000128874 ENSMUSP00000140684 TRANSLATION protein_coding - - 1 228.0 9.0 1.7245 0.0 33.6 0.0 -4,-5 0.0 5 7.56 MINOR ENSMUSG00000037410 Tbc1d2b ENSMUST00000144348 ENSMUSP00000118947 TRANSLATION nonsense_mediated_decay - - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037410 Tbc1d2b ENSMUST00000041767 ENSMUSP00000045413 TRANSLATION protein_coding - CCDS23401.1 1 965.0 9.0 3.9445 1.5 232.3 0.0 -4,-5 1.0 20 19.0 PRINCIPAL:1 ENSMUSG00000046167 Gldn ENSMUST00000056740 ENSMUSP00000056080 TRANSLATION protein_coding - CCDS23189.1 1 549.0 0.0 3.0 0.0 261.6 0.0 -2,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000011118 Panx3 ENSMUST00000215047 - NO_TRANSLATION retained_intron ENSMUSG00000011118 Panx3 ENSMUST00000142228 ENSMUSP00000114539 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 1.2 0.0 0.0 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000011118 Panx3 ENSMUST00000011262 ENSMUSP00000011262 TRANSLATION protein_coding - CCDS22984.1 1 392.0 0.0 2.33 11.4 38.5 3.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032353 Tmed3 ENSMUST00000188808 - NO_TRANSLATION retained_intron ENSMUSG00000032353 Tmed3 ENSMUST00000058488 ENSMUSP00000058723 TRANSLATION protein_coding - CCDS23396.1 1 221.0 0.0 1.2 1.3 160.6 0.0 1,-3 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000043331 Or10d5 ENSMUST00000054067 ENSMUSP00000059776 TRANSLATION protein_coding - CCDS23067.1 - 310.0 0.0 1.0 12.5 173.6 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043331 Or10d5 ENSMUST00000216647 ENSMUSP00000150664 TRANSLATION protein_coding - CCDS23067.1 5 310.0 0.0 1.0 12.5 173.6 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044664 Prss42 ENSMUST00000035715 ENSMUSP00000041088 TRANSLATION protein_coding - CCDS23572.1 1 335.0 5.0 2.56 0.0 221.3 0.0 3,-2 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000032096 Arcn1 ENSMUST00000034607 ENSMUSP00000034607 TRANSLATION protein_coding - CCDS40602.1 1 511.0 0.0 7.15 32.8 148.1 0.0 -3,-1 1.0 30 16.0 PRINCIPAL:1 ENSMUSG00000032096 Arcn1 ENSMUST00000215140 - NO_TRANSLATION retained_intron ENSMUSG00000032096 Arcn1 ENSMUST00000217199 - NO_TRANSLATION retained_intron ENSMUSG00000032096 Arcn1 ENSMUST00000125164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032096 Arcn1 ENSMUST00000217194 - NO_TRANSLATION retained_intron ENSMUSG00000032096 Arcn1 ENSMUST00000150160 - NO_TRANSLATION retained_intron ENSMUSG00000095525 Or7g12 ENSMUST00000086492 ENSMUSP00000083680 TRANSLATION protein_coding - CCDS22850.1 - 312.0 0.0 1.0 10.9 171.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004098 Col5a3 ENSMUST00000145974 - NO_TRANSLATION retained_intron ENSMUSG00000004098 Col5a3 ENSMUST00000004201 ENSMUSP00000004201 TRANSLATION protein_coding - CCDS22883.1 1 1739.0 0.0 20.06 0.4 346.7 0.0 3,-1 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000063856 Gpx1 ENSMUST00000191997 ENSMUSP00000142257 TRANSLATION protein_coding - - 2 144.0 0.0 1.75 1.0 85.7 0.0 -4,-7 0.0353 7 6.204 MINOR ENSMUSG00000063856 Gpx1 ENSMUST00000192401 - NO_TRANSLATION retained_intron ENSMUSG00000063856 Gpx1 ENSMUST00000193987 ENSMUSP00000141279 TRANSLATION protein_coding - - 3 145.0 0.0 1.75 1.0 94.3 0.0 -4,-6 0.0353 9 6.72 MINOR ENSMUSG00000063856 Gpx1 ENSMUST00000082429 ENSMUSP00000081010 TRANSLATION protein_coding - CCDS23522.1 1 201.0 0.0 2.75 2.7 145.9 0.0 -3,0 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000038060 Dlec1 ENSMUST00000148611 - NO_TRANSLATION retained_intron ENSMUSG00000038060 Dlec1 ENSMUST00000055775 ENSMUSP00000052645 TRANSLATION nonsense_mediated_decay - - 1 646.0 0.0 1.13 0.0 0.0 0.0 -4,-5 0.119 - -2.0 MINOR ENSMUSG00000038060 Dlec1 ENSMUST00000140326 ENSMUSP00000122380 TRANSLATION protein_coding - - 5 1741.0 0.0 0.63 0.1 0.0 0.0 -4,-5 0.7026 3 3.348 ALTERNATIVE:2 ENSMUSG00000038060 Dlec1 ENSMUST00000128211 - NO_TRANSLATION retained_intron ENSMUSG00000038060 Dlec1 ENSMUST00000124213 - NO_TRANSLATION retained_intron ENSMUSG00000038060 Dlec1 ENSMUST00000138736 - NO_TRANSLATION retained_intron ENSMUSG00000038060 Dlec1 ENSMUST00000165231 ENSMUSP00000128874 TRANSLATION protein_coding - CCDS52963.1 5 1741.0 0.0 0.63 0.1 0.0 0.0 -4,-5 1.0 3 3.348 PRINCIPAL:2 ENSMUSG00000038060 Dlec1 ENSMUST00000137047 - NO_TRANSLATION retained_intron ENSMUSG00000111842 Gm49318 ENSMUST00000213738 ENSMUSP00000149314 TRANSLATION nonsense_mediated_decay,RT start - 3 188.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5703 - -2.0 PRINCIPAL:1 ENSMUSG00000047257 Prss45 ENSMUST00000011391 ENSMUSP00000011391 TRANSLATION protein_coding - CCDS23575.1 1 317.0 3.0 2.64 0.0 196.3 0.0 -1,-4 0.4903 1 11.0 ALTERNATIVE:2 ENSMUSG00000047257 Prss45 ENSMUST00000146794 ENSMUSP00000120471 TRANSLATION protein_coding - - 1 308.0 3.0 2.64 0.0 196.3 0.0 -1,-3 0.7725 1 11.0 PRINCIPAL:2 ENSMUSG00000053070 Cfap300 ENSMUST00000065291 ENSMUSP00000063450 TRANSLATION protein_coding - CCDS22813.1 1 267.0 0.0 6.58 15.6 367.1 0.0 -4,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000053070 Cfap300 ENSMUST00000215478 ENSMUSP00000149159 TRANSLATION protein_coding - - 1 99.0 0.0 2.5 0.0 83.3 0.0 -4,-2 0.0 3 0.0 MINOR ENSMUSG00000044454 Or7d11 ENSMUST00000212098 ENSMUSP00000148667 TRANSLATION protein_coding - - 3 213.0 0.0 1.165 0.0 92.1 3.0 -4,-6 0.0028 - 4.788 MINOR ENSMUSG00000044454 Or7d11 ENSMUST00000216538 ENSMUSP00000150378 TRANSLATION protein_coding - CCDS22869.1 5 331.0 0.0 2.0 1.8 170.6 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000044454 Or7d11 ENSMUST00000060780 ENSMUSP00000057469 TRANSLATION protein_coding - CCDS22869.1 - 331.0 0.0 2.0 1.8 170.6 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000079469 Pigb ENSMUST00000183587 - NO_TRANSLATION retained_intron ENSMUSG00000079469 Pigb ENSMUST00000183904 ENSMUSP00000138897 TRANSLATION nonsense_mediated_decay start - 5 154.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000079469 Pigb ENSMUST00000185027 - NO_TRANSLATION retained_intron ENSMUSG00000079469 Pigb ENSMUST00000093819 ENSMUSP00000091337 TRANSLATION protein_coding - - 1 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000079469 Pigb ENSMUST00000184776 - NO_TRANSLATION retained_intron ENSMUSG00000079469 Pigb ENSMUST00000183746 ENSMUSP00000138885 TRANSLATION nonsense_mediated_decay - CCDS40687.1 5 542.0 0.0 10.5 0.0 397.5 8.0 -4,-5 1.0 5 -2.0 MINOR ENSMUSG00000079469 Pigb ENSMUST00000184389 ENSMUSP00000139076 TRANSLATION protein_coding - CCDS40687.1 1 542.0 0.0 10.5 0.0 397.5 8.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000079469 Pigb ENSMUST00000184035 ENSMUSP00000139269 TRANSLATION protein_coding - CCDS40687.1 1 542.0 0.0 10.5 0.0 397.5 8.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000034839 Larp6 ENSMUST00000038407 ENSMUSP00000040309 TRANSLATION protein_coding - CCDS23258.1 1 492.0 0.0 1.6 8.2 101.4 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000053773 Rdh8 ENSMUST00000066387 ENSMUSP00000067662 TRANSLATION protein_coding - CCDS22884.1 2 317.0 27.0 6.0 0.0 151.5 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000056167 Cnot10 ENSMUST00000215155 ENSMUSP00000149745 TRANSLATION nonsense_mediated_decay - - 1 405.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0265 9 -2.0 MINOR ENSMUSG00000056167 Cnot10 ENSMUST00000238809 ENSMUSP00000158898 TRANSLATION protein_coding stop - - 126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.011 1 -2.0 MINOR ENSMUSG00000056167 Cnot10 ENSMUST00000213539 - NO_TRANSLATION retained_intron ENSMUSG00000056167 Cnot10 ENSMUST00000216785 ENSMUSP00000149024 TRANSLATION protein_coding - - 5 409.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0265 9 0.0 MINOR ENSMUSG00000056167 Cnot10 ENSMUST00000217296 - NO_TRANSLATION retained_intron ENSMUSG00000056167 Cnot10 ENSMUST00000215701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056167 Cnot10 ENSMUST00000217148 ENSMUSP00000148963 TRANSLATION nonsense_mediated_decay - - 1 289.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.024 5 -2.0 MINOR ENSMUSG00000056167 Cnot10 ENSMUST00000070117 ENSMUSP00000064840 TRANSLATION protein_coding - CCDS40794.1 1 744.0 0.0 0.0 19.3 0.0 0.0 -4,-5 1.0 13 4.0 PRINCIPAL:1 ENSMUSG00000056167 Cnot10 ENSMUST00000213955 ENSMUSP00000149867 TRANSLATION nonsense_mediated_decay - - 1 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.011 1 -2.0 MINOR ENSMUSG00000042073 Abhd14b ENSMUST00000217496 ENSMUSP00000150948 TRANSLATION protein_coding - - 5 96.0 2.0 2.83 0.0 0.0 0.0 -4,-7 0.0 6 3.714 MINOR ENSMUSG00000042073 Abhd14b ENSMUST00000048527 ENSMUSP00000038755 TRANSLATION protein_coding - CCDS23478.1 1 210.0 7.0 4.83 21.9 34.1 0.0 -4,-5 1.0 11 21.916 PRINCIPAL:1 ENSMUSG00000042073 Abhd14b ENSMUST00000185527 ENSMUSP00000139760 TRANSLATION protein_coding stop - 2 174.0 6.0 3.83 0.0 34.6 0.0 -4,-5 0.0019 9 -2.0 MINOR ENSMUSG00000042073 Abhd14b ENSMUST00000213179 ENSMUSP00000149694 TRANSLATION protein_coding - CCDS23478.1 2 210.0 7.0 4.83 21.9 34.1 0.0 -4,-5 1.0 11 21.916 PRINCIPAL:1 ENSMUSG00000042073 Abhd14b ENSMUST00000215475 ENSMUSP00000149469 TRANSLATION protein_coding stop - 5 76.0 1.0 2.33 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000042073 Abhd14b ENSMUST00000187106 ENSMUSP00000139597 TRANSLATION protein_coding stop - 3 142.0 5.0 2.75 0.0 33.8 0.0 -4,-5 0.0024 6 -2.0 MINOR ENSMUSG00000042073 Abhd14b ENSMUST00000190167 ENSMUSP00000140655 TRANSLATION protein_coding stop - 5 151.0 5.0 3.08 0.0 34.1 0.0 -4,-5 0.0025 8 -2.0 MINOR ENSMUSG00000042073 Abhd14b ENSMUST00000186361 ENSMUSP00000141151 TRANSLATION protein_coding stop - 3 194.0 7.0 4.33 0.0 33.8 0.0 -4,-5 0.0025 10 -2.0 MINOR ENSMUSG00000042073 Abhd14b ENSMUST00000216130 ENSMUSP00000150885 TRANSLATION protein_coding - CCDS23478.1 5 210.0 7.0 4.83 21.9 34.1 0.0 -4,-5 1.0 11 21.916 PRINCIPAL:1 ENSMUSG00000042073 Abhd14b ENSMUST00000185347 ENSMUSP00000140279 TRANSLATION protein_coding - CCDS23478.1 3 210.0 7.0 4.83 21.9 34.1 0.0 -4,-5 1.0 11 21.916 PRINCIPAL:1 ENSMUSG00000049314 Fbxw13 ENSMUST00000061456 ENSMUSP00000053786 TRANSLATION protein_coding - CCDS23548.1 1 466.0 0.0 1.52 0.4 49.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049314 Fbxw13 ENSMUST00000199118 ENSMUSP00000143174 TRANSLATION nonsense_mediated_decay - - 1 103.0 0.0 1.2 0.0 46.2 0.0 -4,-7 0.0221 - -2.0 MINOR ENSMUSG00000049314 Fbxw13 ENSMUST00000199102 ENSMUSP00000142352 TRANSLATION protein_coding stop - 3 264.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0011 - -2.0 MINOR ENSMUSG00000048299 Or10n1 ENSMUST00000050807 ENSMUSP00000096473 TRANSLATION protein_coding - CCDS23053.1 - 310.0 0.0 1.0 11.5 152.3 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048299 Or10n1 ENSMUST00000216801 ENSMUSP00000150761 TRANSLATION protein_coding - CCDS23053.1 5 310.0 0.0 1.0 11.5 152.3 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025236 Adpgk ENSMUST00000217570 ENSMUSP00000149882 TRANSLATION protein_coding - CCDS23248.1 1 496.0 23.0 6.35 20.0 456.6 0.0 1,-3 1.0 10 18.0 PRINCIPAL:4 ENSMUSG00000025236 Adpgk ENSMUST00000213413 - NO_TRANSLATION retained_intron ENSMUSG00000025236 Adpgk ENSMUST00000026266 ENSMUSP00000026266 TRANSLATION protein_coding - - 1 495.0 23.0 6.35 20.0 461.3 0.0 1,-3 0.9125 10 18.0 ALTERNATIVE:1 ENSMUSG00000025236 Adpgk ENSMUST00000215994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025236 Adpgk ENSMUST00000214361 - NO_TRANSLATION retained_intron ENSMUSG00000032011 Thy1 ENSMUST00000215156 ENSMUSP00000150177 TRANSLATION protein_coding - - 5 37.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0 - 0.0 MINOR ENSMUSG00000032011 Thy1 ENSMUST00000215809 ENSMUSP00000150960 TRANSLATION protein_coding stop - 2 125.0 0.0 1.5 0.0 38.3 0.0 3,-1 0.0427 5 -2.0 MINOR ENSMUSG00000032011 Thy1 ENSMUST00000214627 ENSMUSP00000149610 TRANSLATION protein_coding - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -1,2 0.0006 - 0.0 MINOR ENSMUSG00000032011 Thy1 ENSMUST00000213733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032011 Thy1 ENSMUST00000213632 - NO_TRANSLATION retained_intron ENSMUSG00000032011 Thy1 ENSMUST00000114840 ENSMUSP00000110489 TRANSLATION protein_coding - CCDS23093.1 2 162.0 0.0 2.0 11.8 38.3 0.0 3,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000053646 Plxnb1 ENSMUST00000192988 ENSMUSP00000142431 TRANSLATION protein_coding start/stop - 5 266.0 0.0 2.33 0.0 86.2 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000053646 Plxnb1 ENSMUST00000131462 ENSMUSP00000115265 TRANSLATION protein_coding stop - 2 140.0 0.0 1.0 0.0 56.4 0.0 1,-3 0.0011 - -2.0 MINOR ENSMUSG00000053646 Plxnb1 ENSMUST00000194734 - NO_TRANSLATION retained_intron ENSMUSG00000053646 Plxnb1 ENSMUST00000130366 ENSMUSP00000114358 TRANSLATION protein_coding stop - 3 140.0 0.0 1.0 0.0 56.4 0.0 1,-3 0.0011 - -2.0 MINOR ENSMUSG00000053646 Plxnb1 ENSMUST00000195364 - NO_TRANSLATION retained_intron ENSMUSG00000053646 Plxnb1 ENSMUST00000072093 ENSMUSP00000071966 TRANSLATION protein_coding - CCDS23546.1 1 2119.0 0.0 21.21 0.1 1098.2 0.0 1,-3 1.0 36 12.0 PRINCIPAL:1 ENSMUSG00000053646 Plxnb1 ENSMUST00000192117 - NO_TRANSLATION retained_intron ENSMUSG00000055334 Snupn ENSMUST00000068856 ENSMUSP00000067200 TRANSLATION protein_coding - CCDS23214.1 1 358.0 0.0 6.6 9.8 64.0 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000032493 Prss44 ENSMUST00000196597 - NO_TRANSLATION retained_intron ENSMUSG00000032493 Prss44 ENSMUST00000098345 ENSMUSP00000095948 TRANSLATION protein_coding - CCDS40782.1 1 372.0 5.0 2.98 0.1 219.3 0.0 2,-3 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000032493 Prss44 ENSMUST00000198815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032493 Prss44 ENSMUST00000141089 ENSMUSP00000117039 TRANSLATION nonsense_mediated_decay - - 1 144.0 0.0 1.0 0.0 33.6 0.0 2,-3 0.0043 - -2.0 MINOR ENSMUSG00000057982 Zfp809 ENSMUST00000072465 ENSMUSP00000072286 TRANSLATION protein_coding - CCDS40560.1 1 402.0 28.0 2.382 0.0 226.9 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000057982 Zfp809 ENSMUST00000215902 ENSMUSP00000150580 TRANSLATION protein_coding - - 1 60.0 0.0 1.05 0.0 83.9 0.0 -4,-5 0.0 - 2.646 MINOR ENSMUSG00000057982 Zfp809 ENSMUST00000215618 ENSMUSP00000151180 TRANSLATION protein_coding - - 1 354.0 28.0 2.25 0.0 226.9 0.0 -4,-5 0.0468 4 13.67 ALTERNATIVE:2 ENSMUSG00000057982 Zfp809 ENSMUST00000215583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057982 Zfp809 ENSMUST00000213350 - NO_TRANSLATION retained_intron ENSMUSG00000057982 Zfp809 ENSMUST00000213371 ENSMUSP00000150314 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 1.0 0.0 81.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010044 Zmynd10 ENSMUST00000010188 ENSMUSP00000010188 TRANSLATION protein_coding - CCDS23493.1 1 440.0 9.0 1.75 6.0 33.5 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000010044 Zmynd10 ENSMUST00000195627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010044 Zmynd10 ENSMUST00000195158 - NO_TRANSLATION retained_intron ENSMUSG00000010044 Zmynd10 ENSMUST00000193303 ENSMUSP00000141420 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000010044 Zmynd10 ENSMUST00000192445 - NO_TRANSLATION retained_intron ENSMUSG00000025648 Pfkfb4 ENSMUST00000199184 - NO_TRANSLATION retained_intron ENSMUSG00000025648 Pfkfb4 ENSMUST00000198277 - NO_TRANSLATION retained_intron ENSMUSG00000025648 Pfkfb4 ENSMUST00000051873 ENSMUSP00000057197 TRANSLATION protein_coding - - 1 453.0 15.0 11.84 0.0 313.0 0.0 -4,-7 0.0856 12 13.908 MINOR ENSMUSG00000025648 Pfkfb4 ENSMUST00000200229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025648 Pfkfb4 ENSMUST00000198140 ENSMUSP00000142378 TRANSLATION protein_coding - CCDS23541.1 1 469.0 17.0 12.34 25.1 342.3 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025648 Pfkfb4 ENSMUST00000199591 ENSMUSP00000142992 TRANSLATION nonsense_mediated_decay - - 1 413.0 14.0 8.93 0.0 342.3 0.0 -4,-7 0.0215 10 -2.0 MINOR ENSMUSG00000025648 Pfkfb4 ENSMUST00000199620 - NO_TRANSLATION retained_intron ENSMUSG00000025648 Pfkfb4 ENSMUST00000196249 ENSMUSP00000143249 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025648 Pfkfb4 ENSMUST00000198763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025648 Pfkfb4 ENSMUST00000200015 ENSMUSP00000142339 TRANSLATION nonsense_mediated_decay start - 5 95.0 6.0 2.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003308 Keap1 ENSMUST00000194542 ENSMUSP00000141807 TRANSLATION protein_coding - CCDS22897.1 1 624.0 0.0 5.0 11.1 511.7 0.0 -4,-6 1.0 24 11.0 PRINCIPAL:2 ENSMUSG00000003308 Keap1 ENSMUST00000164812 ENSMUSP00000131029 TRANSLATION protein_coding - CCDS22897.1 1 624.0 0.0 5.0 11.1 511.7 0.0 -4,-6 1.0 24 11.0 PRINCIPAL:2 ENSMUSG00000003308 Keap1 ENSMUST00000049567 ENSMUSP00000062467 TRANSLATION protein_coding - CCDS22897.1 1 624.0 0.0 5.0 11.1 511.7 0.0 -4,-6 1.0 24 11.0 PRINCIPAL:2 ENSMUSG00000003308 Keap1 ENSMUST00000216436 ENSMUSP00000149705 TRANSLATION protein_coding - - 5 620.0 0.0 5.0 11.1 494.6 0.0 -4,-6 0.728 22 10.8 ALTERNATIVE:1 ENSMUSG00000003308 Keap1 ENSMUST00000193247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003308 Keap1 ENSMUST00000193982 ENSMUSP00000141840 TRANSLATION protein_coding - CCDS22897.1 1 624.0 0.0 5.0 11.1 511.7 0.0 -4,-6 1.0 24 11.0 PRINCIPAL:2 ENSMUSG00000032374 Plod2 ENSMUST00000070522 ENSMUSP00000068611 TRANSLATION protein_coding - CCDS23408.1 1 737.0 3.0 17.5 7.3 25.5 0.0 3,-1 1.0 22 13.0 ALTERNATIVE:1 ENSMUSG00000032374 Plod2 ENSMUST00000161906 - NO_TRANSLATION retained_intron ENSMUSG00000032374 Plod2 ENSMUST00000190075 - NO_TRANSLATION retained_intron ENSMUSG00000032374 Plod2 ENSMUST00000160359 ENSMUSP00000125373 TRANSLATION protein_coding - CCDS52887.1 1 758.0 3.0 17.5 4.1 25.5 0.0 3,-1 0.8301 23 11.984 PRINCIPAL:3 ENSMUSG00000032374 Plod2 ENSMUST00000160142 - NO_TRANSLATION retained_intron ENSMUSG00000062257 Opcml ENSMUST00000133142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062257 Opcml ENSMUST00000134002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062257 Opcml ENSMUST00000073822 ENSMUSP00000073493 TRANSLATION protein_coding - - 5 345.0 0.0 5.95 20.2 153.3 0.0 1,-3 1.0 8 15.628 PRINCIPAL:1 ENSMUSG00000062257 Opcml ENSMUST00000214395 - NO_TRANSLATION retained_intron ENSMUSG00000062257 Opcml ENSMUST00000126673 - NO_TRANSLATION retained_intron ENSMUSG00000062257 Opcml ENSMUST00000150098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062257 Opcml ENSMUST00000123779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062257 Opcml ENSMUST00000126845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062257 Opcml ENSMUST00000115243 ENSMUSP00000110898 TRANSLATION protein_coding - CCDS22942.1 1 337.0 0.0 6.1375 8.7 152.4 0.0 0,-3 0.9268 7 13.55 MINOR ENSMUSG00000001349 Cnn1 ENSMUST00000001384 ENSMUSP00000001384 TRANSLATION protein_coding - CCDS22921.1 1 297.0 0.0 5.4 16.5 244.5 0.0 -4,-6 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000001349 Cnn1 ENSMUST00000213607 ENSMUSP00000149514 TRANSLATION protein_coding stop - 5 82.0 0.0 2.25 0.0 72.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000001349 Cnn1 ENSMUST00000216872 ENSMUSP00000150665 TRANSLATION protein_coding stop - 2 233.0 0.0 4.05 0.0 227.4 0.0 -4,-5 0.0014 12 -2.0 MINOR ENSMUSG00000001349 Cnn1 ENSMUST00000214601 ENSMUSP00000149628 TRANSLATION protein_coding - - 1 238.0 0.0 5.4 0.0 176.7 0.0 -4,-6 0.0231 11 7.932 MINOR ENSMUSG00000001349 Cnn1 ENSMUST00000216141 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041696 Rasl12 ENSMUST00000217172 ENSMUSP00000150153 TRANSLATION nonsense_mediated_decay - - 5 39.0 3.0 0.8 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000041696 Rasl12 ENSMUST00000165682 ENSMUSP00000131837 TRANSLATION protein_coding - CCDS52837.1 1 172.0 19.0 3.05 0.0 76.5 0.0 -4,-2 0.007 1 14.472 MINOR ENSMUSG00000041696 Rasl12 ENSMUST00000085453 ENSMUSP00000082580 TRANSLATION protein_coding - CCDS23290.1 1 266.0 19.0 3.85 11.8 108.6 0.0 -4,-2 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000041696 Rasl12 ENSMUST00000215605 - NO_TRANSLATION retained_intron ENSMUSG00000041009 Iqcf4 ENSMUST00000085111 ENSMUSP00000082192 TRANSLATION protein_coding - CCDS23482.1 1 204.0 0.0 1.0 0.1 50.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032297 Celf6 ENSMUST00000146503 - NO_TRANSLATION retained_intron ENSMUSG00000032297 Celf6 ENSMUST00000118549 ENSMUSP00000112755 TRANSLATION protein_coding - - 5 481.0 0.0 6.23 6.8 173.0 0.0 -4,-7 1.0 3 8.5 PRINCIPAL:4 ENSMUSG00000032297 Celf6 ENSMUST00000034840 ENSMUSP00000034840 TRANSLATION protein_coding - CCDS23251.1 1 460.0 0.0 6.98 2.5 173.0 0.0 -4,-7 0.9884 3 8.518 ALTERNATIVE:2 ENSMUSG00000032297 Celf6 ENSMUST00000121266 ENSMUSP00000113196 TRANSLATION protein_coding - - 1 345.0 0.0 5.23 2.7 118.2 0.0 -4,-5 0.0678 3 4.23 MINOR ENSMUSG00000032297 Celf6 ENSMUST00000143916 ENSMUSP00000118556 TRANSLATION nonsense_mediated_decay - - 5 182.0 0.0 3.25 0.0 79.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032297 Celf6 ENSMUST00000129728 - NO_TRANSLATION retained_intron ENSMUSG00000032297 Celf6 ENSMUST00000118164 ENSMUSP00000112403 TRANSLATION protein_coding - CCDS81012.1 1 344.0 0.0 5.23 2.7 118.2 0.0 -4,-5 0.0779 3 4.23 MINOR ENSMUSG00000032297 Celf6 ENSMUST00000129357 ENSMUSP00000122167 TRANSLATION nonsense_mediated_decay - - 5 162.0 0.0 1.85 0.0 57.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000032184 Lysmd2 ENSMUST00000214961 ENSMUSP00000149065 TRANSLATION nonsense_mediated_decay - - 5 104.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 3 -2.0 MINOR ENSMUSG00000032184 Lysmd2 ENSMUST00000213292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032184 Lysmd2 ENSMUST00000034702 ENSMUSP00000034702 TRANSLATION protein_coding - CCDS40693.1 1 215.0 0.0 0.5 8.1 39.0 0.0 -4,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000032540 Abhd5 ENSMUST00000156520 ENSMUSP00000122274 TRANSLATION protein_coding - CCDS23646.1 1 351.0 9.0 3.86775 1.2 71.8 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000032540 Abhd5 ENSMUST00000214061 - NO_TRANSLATION retained_intron ENSMUSG00000032540 Abhd5 ENSMUST00000176005 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032540 Abhd5 ENSMUST00000175973 ENSMUSP00000135807 TRANSLATION nonsense_mediated_decay - - 2 46.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032540 Abhd5 ENSMUST00000154161 ENSMUSP00000122939 TRANSLATION protein_coding stop - 3 127.0 7.0 1.12375 0.0 58.8 0.0 -4,-2 0.0005 1 -2.0 MINOR ENSMUSG00000032540 Abhd5 ENSMUST00000216775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032540 Abhd5 ENSMUST00000035128 ENSMUSP00000135538 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032540 Abhd5 ENSMUST00000111497 ENSMUSP00000107123 TRANSLATION protein_coding - - 1 198.0 2.0 1.994 0.0 0.0 0.0 -4,-5 0.0 7 3.582 MINOR ENSMUSG00000032434 Cmtm6 ENSMUST00000217637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032434 Cmtm6 ENSMUST00000035007 ENSMUSP00000035007 TRANSLATION protein_coding - CCDS23596.1 1 183.0 0.0 3.0 12.5 43.7 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000049307 Fut4 ENSMUST00000061498 ENSMUSP00000053027 TRANSLATION protein_coding - CCDS22825.1 - 433.0 8.0 0.25 0.4 342.7 0.0 -4,-2 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000025652 Tmem89 ENSMUST00000192852 ENSMUSP00000142016 TRANSLATION protein_coding - - - 140.0 0.0 0.0 0.0 153.1 1.0 3,-2 0.008 1 0.498 MINOR ENSMUSG00000025652 Tmem89 ENSMUST00000026744 ENSMUSP00000026744 TRANSLATION protein_coding - CCDS52928.1 1 169.0 0.0 0.0 0.0 244.8 1.0 3,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000042761 Mrap2 ENSMUST00000049457 ENSMUSP00000046271 TRANSLATION protein_coding - CCDS52878.1 3 207.0 0.0 1.0 14.7 118.7 1.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042761 Mrap2 ENSMUST00000179313 ENSMUSP00000135904 TRANSLATION protein_coding - CCDS52878.1 2 207.0 0.0 1.0 14.7 118.7 1.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042761 Mrap2 ENSMUST00000113149 ENSMUSP00000108774 TRANSLATION protein_coding - CCDS52878.1 5 207.0 0.0 1.0 14.7 118.7 1.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000041064 Pif1 ENSMUST00000152529 - NO_TRANSLATION retained_intron ENSMUSG00000041064 Pif1 ENSMUST00000131483 ENSMUSP00000117494 TRANSLATION protein_coding - - 1 637.0 9.0 10.0 6.4 257.7 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000041064 Pif1 ENSMUST00000141046 ENSMUSP00000120400 TRANSLATION protein_coding stop - 2 144.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041064 Pif1 ENSMUST00000134538 ENSMUSP00000122060 TRANSLATION protein_coding - - 1 637.0 9.0 10.0 6.4 257.7 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000041064 Pif1 ENSMUST00000047099 ENSMUSP00000049046 TRANSLATION protein_coding - - 1 637.0 9.0 10.0 6.4 257.7 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000041064 Pif1 ENSMUST00000136205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041064 Pif1 ENSMUST00000154970 ENSMUSP00000117085 TRANSLATION nonsense_mediated_decay - - 1 398.0 9.0 5.0 1.1 189.2 0.0 -4,-5 0.0173 - -2.0 MINOR ENSMUSG00000041064 Pif1 ENSMUST00000152885 - NO_TRANSLATION retained_intron ENSMUSG00000041064 Pif1 ENSMUST00000239405 ENSMUSP00000159314 TRANSLATION protein_coding - CCDS23295.1 - 650.0 9.0 10.0 0.0 257.7 0.0 -4,-5 0.2026 - 18.0 MINOR ENSMUSG00000074028 Slc22a13 ENSMUST00000084797 ENSMUSP00000081855 TRANSLATION protein_coding - CCDS40802.1 1 551.0 0.0 6.34 5.3 136.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094380 Or8b1b ENSMUST00000058153 ENSMUSP00000057148 TRANSLATION protein_coding - CCDS23011.1 - 310.0 0.0 1.0 10.4 172.0 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094380 Or8b1b ENSMUST00000216724 ENSMUSP00000150057 TRANSLATION protein_coding - CCDS23011.1 5 310.0 0.0 1.0 10.4 172.0 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048534 Jaml ENSMUST00000215098 - NO_TRANSLATION retained_intron ENSMUSG00000048534 Jaml ENSMUST00000216426 ENSMUSP00000150449 TRANSLATION protein_coding stop - 3 167.0 0.0 3.5 0.0 51.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048534 Jaml ENSMUST00000217074 ENSMUSP00000149913 TRANSLATION protein_coding start - 3 113.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000048534 Jaml ENSMUST00000215266 - NO_TRANSLATION retained_intron ENSMUSG00000048534 Jaml ENSMUST00000216333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048534 Jaml ENSMUST00000215880 ENSMUSP00000150697 TRANSLATION protein_coding - CCDS23128.1 1 379.0 0.0 5.33 0.4 124.6 1.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048534 Jaml ENSMUST00000050020 ENSMUSP00000052033 TRANSLATION protein_coding - CCDS23128.1 1 379.0 0.0 5.33 0.4 124.6 1.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032262 Elovl4 ENSMUST00000034796 ENSMUSP00000034796 TRANSLATION protein_coding - CCDS23376.1 1 312.0 0.0 5.75 10.0 225.6 6.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000032262 Elovl4 ENSMUST00000183614 ENSMUSP00000139163 TRANSLATION protein_coding stop - 3 181.0 0.0 4.0 0.0 158.5 4.0 -4,-6 0.0049 - -2.0 MINOR ENSMUSG00000032192 Gnb5 ENSMUST00000215002 ENSMUSP00000150270 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032192 Gnb5 ENSMUST00000215875 ENSMUSP00000150492 TRANSLATION protein_coding - - 1 353.0 0.0 8.75 19.5 123.3 0.0 -4,-5 0.8153 13 11.26 ALTERNATIVE:1 ENSMUSG00000032192 Gnb5 ENSMUST00000076889 ENSMUSP00000076155 TRANSLATION protein_coding - CCDS40692.1 1 395.0 0.0 8.75 23.7 123.3 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000032192 Gnb5 ENSMUST00000213990 ENSMUSP00000149938 TRANSLATION protein_coding - CCDS40692.1 1 395.0 0.0 8.75 23.7 123.3 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000032192 Gnb5 ENSMUST00000215891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032192 Gnb5 ENSMUST00000216290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032192 Gnb5 ENSMUST00000215346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032192 Gnb5 ENSMUST00000214744 - NO_TRANSLATION retained_intron ENSMUSG00000049103 Ccr2 ENSMUST00000171719 ENSMUSP00000130112 TRANSLATION protein_coding - CCDS23669.1 1 373.0 0.0 1.0 5.5 167.4 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049103 Ccr2 ENSMUST00000165984 ENSMUSP00000128734 TRANSLATION protein_coding - CCDS23669.1 - 373.0 0.0 1.0 5.5 167.4 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049103 Ccr2 ENSMUST00000168841 ENSMUSP00000132453 TRANSLATION protein_coding - CCDS23669.1 1 373.0 0.0 1.0 5.5 167.4 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049103 Ccr2 ENSMUST00000055918 ENSMUSP00000049909 TRANSLATION protein_coding - CCDS23669.1 1 373.0 0.0 1.0 5.5 167.4 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032420 Nt5e ENSMUST00000217134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032420 Nt5e ENSMUST00000034992 ENSMUSP00000034992 TRANSLATION protein_coding - CCDS23386.1 1 576.0 17.0 9.0 4.6 194.3 0.0 4,-1 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000032420 Nt5e ENSMUST00000186789 - NO_TRANSLATION retained_intron ENSMUSG00000032420 Nt5e ENSMUST00000187166 - NO_TRANSLATION retained_intron ENSMUSG00000095774 Or8g37 ENSMUST00000213975 ENSMUSP00000150900 TRANSLATION protein_coding - CCDS23062.1 5 311.0 0.0 1.0 11.4 178.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095774 Or8g37 ENSMUST00000215922 ENSMUSP00000150325 TRANSLATION protein_coding - CCDS23062.1 3 311.0 0.0 1.0 11.4 178.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095774 Or8g37 ENSMUST00000071132 ENSMUSP00000071132 TRANSLATION protein_coding - CCDS23062.1 - 311.0 0.0 1.0 11.4 178.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034973 Dop1a ENSMUST00000190906 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000187607 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000186841 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000190407 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000034987 ENSMUSP00000034987 TRANSLATION protein_coding - CCDS52876.1 5 2462.0 0.0 0.0 6.0 383.4 0.0 -4,-5 1.0 19 8.0 PRINCIPAL:1 ENSMUSG00000034973 Dop1a ENSMUST00000185297 ENSMUSP00000140258 TRANSLATION protein_coding start - 1 385.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0013 4 -2.0 MINOR ENSMUSG00000034973 Dop1a ENSMUST00000188675 ENSMUSP00000139413 TRANSLATION protein_coding stop - 1 718.0 0.0 0.0 0.0 383.4 0.0 -4,-5 0.0663 3 -2.0 MINOR ENSMUSG00000034973 Dop1a ENSMUST00000189564 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000186290 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000187427 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000190834 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000185840 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000186715 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000185919 ENSMUSP00000140040 TRANSLATION nonsense_mediated_decay - - 5 1706.0 0.0 0.0 0.0 383.3 0.0 -4,-5 0.1642 12 -2.0 MINOR ENSMUSG00000034973 Dop1a ENSMUST00000186418 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000189817 ENSMUSP00000139642 TRANSLATION nonsense_mediated_decay start - 1 279.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0012 5 -2.0 MINOR ENSMUSG00000034973 Dop1a ENSMUST00000187348 - NO_TRANSLATION retained_intron ENSMUSG00000034973 Dop1a ENSMUST00000190957 ENSMUSP00000140740 TRANSLATION protein_coding - CCDS52876.1 5 2462.0 0.0 0.0 6.0 383.4 0.0 -4,-5 1.0 19 8.0 PRINCIPAL:1 ENSMUSG00000002825 Qtrt1 ENSMUST00000214101 - NO_TRANSLATION retained_intron ENSMUSG00000002825 Qtrt1 ENSMUST00000214900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002825 Qtrt1 ENSMUST00000216527 ENSMUSP00000149808 TRANSLATION nonsense_mediated_decay - - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002825 Qtrt1 ENSMUST00000213967 - NO_TRANSLATION retained_intron ENSMUSG00000002825 Qtrt1 ENSMUST00000213718 ENSMUSP00000149197 TRANSLATION nonsense_mediated_decay start - 5 53.0 0.0 0.83 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000002825 Qtrt1 ENSMUST00000214128 - NO_TRANSLATION retained_intron ENSMUSG00000002825 Qtrt1 ENSMUST00000217060 ENSMUSP00000149752 TRANSLATION protein_coding start - 2 112.0 4.0 2.75 0.0 77.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000002825 Qtrt1 ENSMUST00000216277 ENSMUSP00000150786 TRANSLATION nonsense_mediated_decay start - 3 61.0 0.0 0.5 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000002825 Qtrt1 ENSMUST00000217188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002825 Qtrt1 ENSMUST00000002902 ENSMUSP00000002902 TRANSLATION protein_coding - CCDS52735.1 1 403.0 13.0 11.08 12.1 290.5 0.0 -4,-2 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000002825 Qtrt1 ENSMUST00000214681 ENSMUSP00000148877 TRANSLATION nonsense_mediated_decay start - 5 53.0 0.0 0.83 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000079559 Pou2af3 ENSMUST00000114427 ENSMUSP00000110070 TRANSLATION protein_coding - CCDS57676.1 3 239.0 0.0 0.0 0.4 0.0 0.0 -4,-2 0.0529 - 0.0 MINOR ENSMUSG00000079559 Pou2af3 ENSMUST00000215038 ENSMUSP00000150539 TRANSLATION protein_coding - CCDS57676.1 5 239.0 0.0 0.0 0.4 0.0 0.0 -4,-2 0.0529 - 0.0 MINOR ENSMUSG00000079559 Pou2af3 ENSMUST00000239415 ENSMUSP00000159303 TRANSLATION protein_coding - - - 253.0 0.0 0.0 4.5 25.4 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000061536 Sec22c ENSMUST00000215056 ENSMUSP00000149594 TRANSLATION protein_coding start - 3 220.0 0.0 0.6 0.0 27.4 1.0 -1,-4 0.0003 - -2.0 MINOR ENSMUSG00000061536 Sec22c ENSMUST00000154978 ENSMUSP00000123170 TRANSLATION protein_coding stop - 2 38.0 0.0 0.0 0.0 0.0 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000061536 Sec22c ENSMUST00000111560 ENSMUSP00000107185 TRANSLATION protein_coding - CCDS23634.1 1 303.0 0.0 1.32 22.0 41.1 2.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000061536 Sec22c ENSMUST00000214595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061536 Sec22c ENSMUST00000078547 ENSMUSP00000077628 TRANSLATION protein_coding - CCDS23634.1 1 303.0 0.0 1.32 22.0 41.1 2.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000061536 Sec22c ENSMUST00000132733 - NO_TRANSLATION retained_intron ENSMUSG00000061536 Sec22c ENSMUST00000139193 ENSMUSP00000114270 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 0.48 0.0 0.0 0.0 -3,-2 0.0 - -2.0 MINOR ENSMUSG00000050397 Foxl2 ENSMUST00000051312 ENSMUSP00000053297 TRANSLATION protein_coding - CCDS23430.1 - 375.0 0.0 0.5 3.5 128.8 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000000171 Sdhd ENSMUST00000000175 ENSMUSP00000000175 TRANSLATION protein_coding - CCDS40623.1 1 159.0 13.0 2.0 24.4 84.1 0.0 -1,1 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000032349 Elovl5 ENSMUST00000148398 - NO_TRANSLATION retained_intron ENSMUSG00000032349 Elovl5 ENSMUST00000034904 ENSMUSP00000034904 TRANSLATION protein_coding - CCDS23355.1 1 299.0 0.0 6.305 36.2 221.7 6.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032349 Elovl5 ENSMUST00000133757 ENSMUSP00000123121 TRANSLATION protein_coding stop - 3 180.0 0.0 3.955 0.0 146.4 4.0 -4,-7 0.0029 1 -2.0 MINOR ENSMUSG00000032349 Elovl5 ENSMUST00000134072 ENSMUSP00000120171 TRANSLATION protein_coding stop - 3 71.0 0.0 1.375 0.0 33.7 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000007815 Rhoa ENSMUST00000193424 - NO_TRANSLATION retained_intron ENSMUSG00000007815 Rhoa ENSMUST00000194701 ENSMUSP00000141967 TRANSLATION protein_coding stop - 2 165.0 25.0 4.0 0.0 183.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000007815 Rhoa ENSMUST00000193490 ENSMUSP00000141572 TRANSLATION protein_coding stop - 2 67.0 15.0 1.5 0.0 87.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007815 Rhoa ENSMUST00000007959 ENSMUSP00000007959 TRANSLATION protein_coding - CCDS23521.1 1 193.0 25.0 4.75 36.9 197.1 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000007815 Rhoa ENSMUST00000193619 - NO_TRANSLATION retained_intron ENSMUSG00000048521 Cxcr6 ENSMUST00000049810 ENSMUSP00000060776 TRANSLATION protein_coding - CCDS23664.1 1 351.0 0.0 0.5 0.1 147.0 6.0 -4,-6 0.6758 - 6.0 ALTERNATIVE:2 ENSMUSG00000048521 Cxcr6 ENSMUST00000216072 ENSMUSP00000151182 TRANSLATION protein_coding - - 1 358.0 0.0 0.5 0.0 147.0 6.0 -4,-5 0.8187 - 6.0 PRINCIPAL:4 ENSMUSG00000032526 Ss18l2 ENSMUST00000215104 ENSMUSP00000148939 TRANSLATION protein_coding - - 5 69.0 0.0 1.75 13.3 93.6 0.0 -4,-5 0.7165 1 14.542 MINOR ENSMUSG00000032526 Ss18l2 ENSMUST00000215966 ENSMUSP00000151078 TRANSLATION protein_coding - - 1 49.0 0.0 0.948 0.0 60.8 0.0 -4,-5 0.0002 - 6.108 MINOR ENSMUSG00000032526 Ss18l2 ENSMUST00000217579 - NO_TRANSLATION retained_intron ENSMUSG00000032526 Ss18l2 ENSMUST00000214535 - NO_TRANSLATION retained_intron ENSMUSG00000032526 Ss18l2 ENSMUST00000213768 - NO_TRANSLATION retained_intron ENSMUSG00000032526 Ss18l2 ENSMUST00000035113 ENSMUSP00000035113 TRANSLATION protein_coding - CCDS40811.1 1 77.0 0.0 1.948 13.3 107.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032526 Ss18l2 ENSMUST00000215833 ENSMUSP00000149190 TRANSLATION protein_coding - - 3 96.0 0.0 0.948 0.0 63.5 0.0 -4,-5 0.0003 - 6.27 MINOR ENSMUSG00000037287 Tbcel ENSMUST00000138506 ENSMUSP00000116616 TRANSLATION protein_coding - CCDS23088.1 5 424.0 0.0 2.075 31.7 27.4 0.0 -4,-6 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000037287 Tbcel ENSMUST00000134374 ENSMUSP00000114275 TRANSLATION protein_coding stop - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000037287 Tbcel ENSMUST00000125995 ENSMUSP00000114721 TRANSLATION protein_coding - CCDS23088.1 1 424.0 0.0 2.075 31.7 27.4 0.0 -4,-6 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000037287 Tbcel ENSMUST00000128959 ENSMUSP00000121164 TRANSLATION protein_coding - CCDS23088.1 5 424.0 0.0 2.075 31.7 27.4 0.0 -4,-6 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000037287 Tbcel ENSMUST00000066179 ENSMUSP00000065125 TRANSLATION protein_coding - - 1 442.0 0.0 2.075 0.1 27.4 0.0 -4,-5 0.0551 15 12.0 MINOR ENSMUSG00000037287 Tbcel ENSMUST00000066148 ENSMUSP00000067882 TRANSLATION protein_coding - CCDS23088.1 1 424.0 0.0 2.075 31.7 27.4 0.0 -4,-6 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000037287 Tbcel ENSMUST00000213428 - NO_TRANSLATION retained_intron ENSMUSG00000037287 Tbcel ENSMUST00000142775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047050 Or8b50 ENSMUST00000057755 ENSMUSP00000053405 TRANSLATION protein_coding - CCDS23019.1 - 316.0 0.0 1.0 2.1 162.6 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000047050 Or8b50 ENSMUST00000217057 ENSMUSP00000150241 TRANSLATION protein_coding - CCDS23019.1 3 316.0 0.0 1.0 2.1 162.6 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032121 Tmem218 ENSMUST00000034632 ENSMUSP00000034632 TRANSLATION protein_coding - CCDS22975.1 1 115.0 0.0 2.8 26.9 0.0 0.0 1,-3 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000104614 Fbxw27 ENSMUST00000199197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000104614 Fbxw27 ENSMUST00000199430 ENSMUSP00000148730 TRANSLATION protein_coding start - 5 254.0 0.0 0.36 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000104614 Fbxw27 ENSMUST00000212674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000104614 Fbxw27 ENSMUST00000200610 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000104614 Fbxw27 ENSMUST00000197125 ENSMUSP00000148376 TRANSLATION protein_coding - CCDS85731.1 3 209.0 0.0 1.31 0.0 46.1 0.0 -4,-7 0.2799 - 7.778 ALTERNATIVE:2 ENSMUSG00000104614 Fbxw27 ENSMUST00000198666 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000104614 Fbxw27 ENSMUST00000212725 ENSMUSP00000148340 TRANSLATION protein_coding - - 5 466.0 0.0 1.36 0.1 46.1 0.0 -4,-7 0.7876 - 8.0 PRINCIPAL:2 ENSMUSG00000104614 Fbxw27 ENSMUST00000211814 ENSMUSP00000148740 TRANSLATION nonsense_mediated_decay start - 3 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008590 Htr3b ENSMUST00000008734 ENSMUSP00000008734 TRANSLATION protein_coding - CCDS23160.1 1 437.0 0.0 5.32 4.0 210.6 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000037784 Dzip1l ENSMUST00000131095 ENSMUSP00000116647 TRANSLATION protein_coding stop - 1 125.0 0.0 0.0 0.0 140.0 0.0 -4,-6 0.0023 - -2.0 MINOR ENSMUSG00000037784 Dzip1l ENSMUST00000190893 - NO_TRANSLATION retained_intron ENSMUSG00000037784 Dzip1l ENSMUST00000134969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037784 Dzip1l ENSMUST00000078367 ENSMUSP00000077475 TRANSLATION protein_coding - CCDS23436.1 1 774.0 4.0 0.0 3.5 151.7 0.0 -4,-6 1.0 1 7.0 PRINCIPAL:4 ENSMUSG00000037784 Dzip1l ENSMUST00000112886 ENSMUSP00000108507 TRANSLATION protein_coding - CCDS81060.1 1 773.0 4.0 0.0 2.6 151.7 0.0 -4,-6 0.9055 1 6.64 ALTERNATIVE:2 ENSMUSG00000037784 Dzip1l ENSMUST00000112885 ENSMUSP00000108506 TRANSLATION protein_coding - CCDS23436.1 1 774.0 4.0 0.0 3.5 151.7 0.0 -4,-6 1.0 1 7.0 PRINCIPAL:4 ENSMUSG00000037784 Dzip1l ENSMUST00000112884 ENSMUSP00000108505 TRANSLATION protein_coding - CCDS81060.1 5 773.0 4.0 0.0 2.6 151.7 0.0 -4,-6 0.9055 1 6.64 ALTERNATIVE:2 ENSMUSG00000037257 Aagab ENSMUST00000041551 ENSMUSP00000048595 TRANSLATION protein_coding - CCDS23271.1 1 316.0 0.0 3.8 13.4 81.8 0.0 -2,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000037257 Aagab ENSMUST00000213880 ENSMUSP00000148887 TRANSLATION nonsense_mediated_decay start - 3 98.0 0.0 2.55 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000037257 Aagab ENSMUST00000213702 - NO_TRANSLATION retained_intron ENSMUSG00000036781 Rps27l ENSMUST00000143044 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036781 Rps27l ENSMUST00000123931 - NO_TRANSLATION retained_intron ENSMUSG00000036781 Rps27l ENSMUST00000040917 ENSMUSP00000046016 TRANSLATION protein_coding - CCDS40673.1 1 84.0 4.0 2.25 34.9 104.7 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000036781 Rps27l ENSMUST00000146573 ENSMUSP00000115242 TRANSLATION protein_coding start - 3 33.0 0.0 0.75 0.0 32.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036781 Rps27l ENSMUST00000147394 ENSMUSP00000118963 TRANSLATION nonsense_mediated_decay - - 5 77.0 4.0 2.25 0.0 96.9 0.0 -4,-5 0.0103 2 -2.0 MINOR ENSMUSG00000036781 Rps27l ENSMUST00000127896 ENSMUSP00000120518 TRANSLATION protein_coding - CCDS81028.1 5 105.0 4.0 2.25 0.0 95.4 0.0 -4,-5 0.0773 2 15.442 MINOR ENSMUSG00000070306 Ccdc153 ENSMUST00000215711 ENSMUSP00000149025 TRANSLATION protein_coding start - 5 172.0 0.0 4.33 0.0 0.0 0.0 -4,-6 0.0035 - -2.0 MINOR ENSMUSG00000070306 Ccdc153 ENSMUST00000215554 ENSMUSP00000150040 TRANSLATION protein_coding start - 5 154.0 0.0 3.73 0.0 0.0 0.0 -4,-5 0.0017 - -2.0 MINOR ENSMUSG00000070306 Ccdc153 ENSMUST00000213891 ENSMUSP00000149540 TRANSLATION protein_coding - - 3 209.0 0.0 4.73 6.4 0.0 0.0 -4,-5 0.657 - 7.56 MINOR ENSMUSG00000070306 Ccdc153 ENSMUST00000092426 ENSMUSP00000090082 TRANSLATION protein_coding - CCDS52778.1 2 202.0 0.0 5.06 8.3 0.0 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000070306 Ccdc153 ENSMUST00000216995 - NO_TRANSLATION retained_intron ENSMUSG00000070306 Ccdc153 ENSMUST00000217221 ENSMUSP00000149153 TRANSLATION protein_coding stop - 3 102.0 0.0 2.33 0.0 0.0 0.0 -4,-6 0.0015 - -2.0 MINOR ENSMUSG00000070306 Ccdc153 ENSMUST00000217510 ENSMUSP00000151001 TRANSLATION protein_coding stop - 5 155.0 0.0 4.06 0.0 0.0 0.0 -4,-5 0.0021 - -2.0 MINOR ENSMUSG00000070306 Ccdc153 ENSMUST00000216047 - NO_TRANSLATION retained_intron ENSMUSG00000070306 Ccdc153 ENSMUST00000216632 ENSMUSP00000150478 TRANSLATION protein_coding - - 2 187.0 0.0 4.0 2.2 0.0 0.0 -4,-6 0.1373 - 4.374 MINOR ENSMUSG00000039714 Cplx3 ENSMUST00000045068 ENSMUSP00000046748 TRANSLATION protein_coding - CCDS23226.1 1 158.0 0.0 3.0 34.9 157.5 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000039714 Cplx3 ENSMUST00000215487 ENSMUSP00000149521 TRANSLATION protein_coding - - 3 75.0 0.0 0.5 0.0 56.7 0.0 -4,-5 0.0 2 1.002 MINOR ENSMUSG00000039714 Cplx3 ENSMUST00000217015 ENSMUSP00000150682 TRANSLATION protein_coding - - 2 46.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000032556 Bfsp2 ENSMUST00000136636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032556 Bfsp2 ENSMUST00000124310 ENSMUSP00000116249 TRANSLATION protein_coding - CCDS52903.1 1 416.0 0.0 3.25 7.2 183.0 0.0 -4,0 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000043953 Ccrl2 ENSMUST00000195968 ENSMUSP00000143105 TRANSLATION protein_coding stop - 2 133.0 0.0 0.6 0.0 32.6 5.0 -4,-5 0.0057 - -2.0 MINOR ENSMUSG00000043953 Ccrl2 ENSMUST00000199839 ENSMUSP00000143116 TRANSLATION protein_coding - CCDS23582.1 1 360.0 0.0 1.1 0.4 77.0 8.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000043953 Ccrl2 ENSMUST00000111888 ENSMUSP00000107519 TRANSLATION protein_coding - CCDS23582.1 1 360.0 0.0 1.1 0.4 77.0 8.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000032308 Ulk3 ENSMUST00000215868 - NO_TRANSLATION retained_intron ENSMUSG00000032308 Ulk3 ENSMUST00000217100 - NO_TRANSLATION retained_intron ENSMUSG00000032308 Ulk3 ENSMUST00000215748 ENSMUSP00000149623 TRANSLATION nonsense_mediated_decay start - 3 43.0 1.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032308 Ulk3 ENSMUST00000213530 - NO_TRANSLATION retained_intron ENSMUSG00000032308 Ulk3 ENSMUST00000215146 - NO_TRANSLATION retained_intron ENSMUSG00000032308 Ulk3 ENSMUST00000053230 ENSMUSP00000059947 TRANSLATION protein_coding - CCDS52809.1 1 472.0 17.0 13.08 13.7 361.7 0.0 -4,-6 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000032308 Ulk3 ENSMUST00000213212 - NO_TRANSLATION retained_intron ENSMUSG00000010066 Cacna2d2 ENSMUST00000169354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010066 Cacna2d2 ENSMUST00000010210 ENSMUSP00000010210 TRANSLATION protein_coding - CCDS52917.1 1 1148.0 4.0 17.8495 3.4 917.7 1.0 0,2 1.0 20 13.0 PRINCIPAL:4 ENSMUSG00000010066 Cacna2d2 ENSMUST00000194842 - NO_TRANSLATION retained_intron ENSMUSG00000010066 Cacna2d2 ENSMUST00000085092 ENSMUSP00000082173 TRANSLATION protein_coding - CCDS52916.1 5 1154.0 4.0 17.6445 2.5 917.8 1.0 0,2 0.9017 20 12.217 ALTERNATIVE:2 ENSMUSG00000010066 Cacna2d2 ENSMUST00000170737 ENSMUSP00000125943 TRANSLATION protein_coding - CCDS72305.1 1 1150.0 4.0 17.8495 3.4 914.2 1.0 0,2 0.9296 20 13.0 ALTERNATIVE:2 ENSMUSG00000010066 Cacna2d2 ENSMUST00000168532 ENSMUSP00000132512 TRANSLATION protein_coding - CCDS72304.1 1 1156.0 4.0 17.6445 2.5 914.2 1.0 0,2 0.8411 20 12.217 ALTERNATIVE:2 ENSMUSG00000010066 Cacna2d2 ENSMUST00000171809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010066 Cacna2d2 ENSMUST00000168959 - NO_TRANSLATION retained_intron ENSMUSG00000010066 Cacna2d2 ENSMUST00000166799 ENSMUSP00000126029 TRANSLATION protein_coding - - 5 1157.0 4.0 17.5195 2.5 914.4 1.0 0,2 0.6885 20 11.965 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000131279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032366 Tpm1 ENSMUST00000113685 ENSMUSP00000109315 TRANSLATION protein_coding - CCDS52845.1 1 284.0 0.0 7.75 33.2 326.1 0.0 -4,-5 0.9985 15 9.662 ALTERNATIVE:1 ENSMUSG00000032366 Tpm1 ENSMUST00000113707 ENSMUSP00000109337 TRANSLATION protein_coding - CCDS23311.1 1 284.0 0.0 7.75 34.2 314.4 0.0 -4,-5 1.0 15 9.774 PRINCIPAL:4 ENSMUSG00000032366 Tpm1 ENSMUST00000113689 ENSMUSP00000109319 TRANSLATION protein_coding - - 5 245.0 0.0 6.53 29.2 283.6 0.0 -4,-7 0.7198 12 6.764 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000113687 ENSMUSP00000109317 TRANSLATION protein_coding - - 5 287.0 0.0 7.3 5.1 292.4 0.0 -4,-5 0.2205 12 3.566 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000113705 ENSMUSP00000109335 TRANSLATION protein_coding - CCDS52848.1 1 284.0 0.0 7.75 36.2 302.6 0.0 -4,-5 0.9657 17 10.002 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000113686 ENSMUSP00000109316 TRANSLATION protein_coding - - 5 251.0 0.0 6.3 2.4 290.7 0.0 -4,-7 0.0431 12 1.258 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000030185 ENSMUSP00000030185 TRANSLATION protein_coding - - 2 284.0 0.0 7.75 34.2 326.1 0.0 -4,-5 0.859 15 9.774 ALTERNATIVE:1 ENSMUSG00000032366 Tpm1 ENSMUST00000113701 ENSMUSP00000109331 TRANSLATION protein_coding - - 5 284.0 0.0 7.83 33.2 287.2 0.0 -4,-5 0.814 15 9.818 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000129466 - NO_TRANSLATION retained_intron ENSMUSG00000032366 Tpm1 ENSMUST00000113696 ENSMUSP00000109326 TRANSLATION protein_coding - CCDS52843.1 2 248.0 0.0 6.83 28.0 294.7 0.0 -4,-7 0.8596 13 7.228 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000139046 ENSMUSP00000138514 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000113693 ENSMUSP00000109323 TRANSLATION protein_coding - CCDS52844.1 5 281.0 0.0 7.45 25.8 303.5 0.0 -4,-5 0.8997 14 8.222 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000156899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032366 Tpm1 ENSMUST00000113684 ENSMUSP00000109314 TRANSLATION protein_coding - - 5 248.0 0.0 6.83 32.2 306.6 0.0 -4,-7 0.7948 13 7.704 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000050905 ENSMUSP00000051888 TRANSLATION protein_coding - CCDS52847.1 1 284.0 0.0 7.83 36.2 310.5 0.0 -4,-5 0.9864 13 10.158 ALTERNATIVE:1 ENSMUSG00000032366 Tpm1 ENSMUST00000129733 ENSMUSP00000138784 TRANSLATION nonsense_mediated_decay - - 5 157.0 0.0 3.0 0.0 116.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000113695 ENSMUSP00000109325 TRANSLATION protein_coding - CCDS52841.1 3 248.0 0.0 6.75 30.3 310.1 0.0 -4,-7 0.9433 15 7.326 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000034928 ENSMUSP00000034928 TRANSLATION protein_coding - - 5 326.0 0.0 8.75 17.6 314.4 0.0 -4,-5 0.685 17 9.888 ALTERNATIVE:1 ENSMUSG00000032366 Tpm1 ENSMUST00000113697 ENSMUSP00000109327 TRANSLATION protein_coding - CCDS52846.1 2 284.0 0.0 7.83 31.2 299.1 0.0 -4,-5 0.9466 13 9.59 MINOR ENSMUSG00000032366 Tpm1 ENSMUST00000113690 ENSMUSP00000109320 TRANSLATION protein_coding - CCDS52842.1 3 245.0 0.0 6.45 28.8 298.9 0.0 -4,-7 0.8923 14 6.558 MINOR ENSMUSG00000059495 Arhgef12 ENSMUST00000215898 - NO_TRANSLATION retained_intron ENSMUSG00000059495 Arhgef12 ENSMUST00000213566 ENSMUSP00000150833 TRANSLATION nonsense_mediated_decay start - 3 106.0 0.0 2.52375 0.0 46.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000059495 Arhgef12 ENSMUST00000217502 - NO_TRANSLATION retained_intron ENSMUSG00000059495 Arhgef12 ENSMUST00000072767 ENSMUSP00000072547 TRANSLATION protein_coding - - 1 1543.0 0.0 17.178 7.3 462.0 0.0 -4,-6 0.8622 32 10.0 ALTERNATIVE:1 ENSMUSG00000059495 Arhgef12 ENSMUST00000165665 ENSMUSP00000126598 TRANSLATION protein_coding - CCDS40595.1 1 1544.0 0.0 17.178 7.3 462.0 0.0 -4,-6 1.0 32 10.0 PRINCIPAL:4 ENSMUSG00000059495 Arhgef12 ENSMUST00000214175 - NO_TRANSLATION retained_intron ENSMUSG00000062270 Morf4l1 ENSMUST00000189241 - NO_TRANSLATION retained_intron ENSMUSG00000062270 Morf4l1 ENSMUST00000188905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062270 Morf4l1 ENSMUST00000190377 - NO_TRANSLATION retained_intron ENSMUSG00000062270 Morf4l1 ENSMUST00000169860 ENSMUSP00000132020 TRANSLATION protein_coding - CCDS52885.1 1 323.0 0.0 7.662 30.4 243.8 0.0 -4,-5 1.0 11 15.202 PRINCIPAL:1 ENSMUSG00000062270 Morf4l1 ENSMUST00000085248 ENSMUSP00000082346 TRANSLATION protein_coding - CCDS23400.1 1 362.0 0.0 8.062 9.1 219.1 0.0 -4,-5 0.4409 10 11.622 MINOR ENSMUSG00000062270 Morf4l1 ENSMUST00000190345 ENSMUSP00000141091 TRANSLATION nonsense_mediated_decay - - 5 50.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062270 Morf4l1 ENSMUST00000185433 - NO_TRANSLATION retained_intron ENSMUSG00000062270 Morf4l1 ENSMUST00000191189 ENSMUSP00000140118 TRANSLATION protein_coding - - 5 296.0 0.0 7.132 1.1 243.8 0.0 -4,-5 0.1298 10 10.152 MINOR ENSMUSG00000062270 Morf4l1 ENSMUST00000189420 - NO_TRANSLATION retained_intron ENSMUSG00000062270 Morf4l1 ENSMUST00000189089 - NO_TRANSLATION retained_intron ENSMUSG00000062270 Morf4l1 ENSMUST00000191353 ENSMUSP00000140023 TRANSLATION protein_coding stop - 3 172.0 0.0 2.912 0.0 35.7 0.0 -4,-5 0.0001 4 -2.0 MINOR ENSMUSG00000062270 Morf4l1 ENSMUST00000187771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032038 St3gal4 ENSMUST00000216557 ENSMUSP00000150775 TRANSLATION protein_coding stop - 5 181.0 2.0 2.78 0.0 34.2 1.0 -4,-5 0.0015 5 -2.0 MINOR ENSMUSG00000032038 St3gal4 ENSMUST00000214526 ENSMUSP00000149827 TRANSLATION protein_coding stop - 3 160.0 0.0 2.28 0.0 0.0 1.0 -4,-7 0.0015 5 -2.0 MINOR ENSMUSG00000032038 St3gal4 ENSMUST00000215638 ENSMUSP00000149302 TRANSLATION protein_coding stop - 5 113.0 0.0 0.85 0.0 0.0 1.0 -4,0 0.0026 3 -2.0 MINOR ENSMUSG00000032038 St3gal4 ENSMUST00000213526 ENSMUSP00000150841 TRANSLATION protein_coding stop - 2 204.0 4.0 3.78 0.0 92.8 1.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000032038 St3gal4 ENSMUST00000215463 ENSMUSP00000149145 TRANSLATION protein_coding stop - 3 48.0 0.0 0.2 0.0 0.0 1.0 2,-3 0.0036 1 -2.0 MINOR ENSMUSG00000032038 St3gal4 ENSMUST00000217542 ENSMUSP00000150423 TRANSLATION protein_coding stop - 2 115.0 0.0 0.85 0.0 0.0 1.0 -4,-1 0.0022 3 -2.0 MINOR ENSMUSG00000032038 St3gal4 ENSMUST00000034537 ENSMUSP00000034537 TRANSLATION protein_coding - CCDS22956.1 1 333.0 10.0 6.78 16.7 207.1 1.0 2,-3 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000032038 St3gal4 ENSMUST00000217149 ENSMUSP00000150187 TRANSLATION protein_coding stop - 3 74.0 0.0 0.85 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032038 St3gal4 ENSMUST00000215089 ENSMUSP00000149489 TRANSLATION protein_coding stop - 5 134.0 0.0 1.58 0.0 0.0 1.0 -4,-7 0.0015 5 -2.0 MINOR ENSMUSG00000032582 Rbm6 ENSMUST00000183035 ENSMUSP00000138236 TRANSLATION protein_coding stop - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0236 - -2.0 MINOR ENSMUSG00000032582 Rbm6 ENSMUST00000192474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032582 Rbm6 ENSMUST00000183152 - NO_TRANSLATION retained_intron ENSMUSG00000032582 Rbm6 ENSMUST00000183179 - NO_TRANSLATION retained_intron ENSMUSG00000032582 Rbm6 ENSMUST00000193957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032582 Rbm6 ENSMUST00000183032 ENSMUSP00000138400 TRANSLATION protein_coding - CCDS59749.1 1 1118.0 4.0 2.1 10.3 0.0 0.0 -4,-7 1.0 23 13.0 PRINCIPAL:1 ENSMUSG00000032582 Rbm6 ENSMUST00000195866 ENSMUSP00000141622 TRANSLATION protein_coding stop - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0202 - -2.0 MINOR ENSMUSG00000032582 Rbm6 ENSMUST00000181986 ENSMUSP00000138172 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.0 0.0 0.0 0.0 1,3 0.0606 - -2.0 MINOR ENSMUSG00000032582 Rbm6 ENSMUST00000182301 - NO_TRANSLATION retained_intron ENSMUSG00000032582 Rbm6 ENSMUST00000182242 - NO_TRANSLATION retained_intron ENSMUSG00000032582 Rbm6 ENSMUST00000182092 - NO_TRANSLATION retained_intron ENSMUSG00000032582 Rbm6 ENSMUST00000182445 - NO_TRANSLATION retained_intron ENSMUSG00000032582 Rbm6 ENSMUST00000194436 ENSMUSP00000142283 TRANSLATION protein_coding start - 3 187.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0031 4 -2.0 MINOR ENSMUSG00000032582 Rbm6 ENSMUST00000035201 ENSMUSP00000035201 TRANSLATION protein_coding - CCDS23507.1 1 986.0 4.0 2.1 5.5 0.0 0.0 -4,-5 0.6405 20 11.452 MINOR ENSMUSG00000032582 Rbm6 ENSMUST00000194250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032582 Rbm6 ENSMUST00000195883 ENSMUSP00000141953 TRANSLATION protein_coding stop - 2 77.0 4.0 0.15 0.0 0.0 0.0 -4,-5 0.0089 3 -2.0 MINOR ENSMUSG00000074345 Tnfaip8l3 ENSMUST00000214656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074345 Tnfaip8l3 ENSMUST00000098760 ENSMUSP00000096356 TRANSLATION protein_coding - CCDS40641.1 1 204.0 0.0 1.0 30.4 251.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000019471 Cdc37 ENSMUST00000215296 ENSMUSP00000150265 TRANSLATION protein_coding stop - 5 353.0 0.0 6.0 0.0 157.8 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000019471 Cdc37 ENSMUST00000019615 ENSMUSP00000019615 TRANSLATION protein_coding - CCDS22894.1 1 379.0 0.0 7.75 11.8 214.8 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000019471 Cdc37 ENSMUST00000215866 - NO_TRANSLATION retained_intron ENSMUSG00000058491 Or7e175 ENSMUST00000213024 ENSMUSP00000154723 TRANSLATION protein_coding - CCDS22871.2 2 323.0 0.0 1.0 3.8 143.7 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032253 Phip ENSMUST00000188850 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000189927 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000190838 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000034787 ENSMUSP00000034787 TRANSLATION protein_coding - CCDS40706.1 1 1821.0 0.0 8.875 5.7 232.2 0.0 -4,-7 1.0 30 14.0 PRINCIPAL:1 ENSMUSG00000032253 Phip ENSMUST00000189985 ENSMUSP00000140445 TRANSLATION protein_coding stop - 1 360.0 0.0 4.175 0.0 93.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032253 Phip ENSMUST00000186089 ENSMUSP00000139678 TRANSLATION nonsense_mediated_decay start - 1 92.0 0.0 1.295 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032253 Phip ENSMUST00000189209 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000188868 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000190822 ENSMUSP00000139866 TRANSLATION nonsense_mediated_decay start - 3 84.0 0.0 1.464 0.0 12.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032253 Phip ENSMUST00000190405 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000190101 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000186099 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000190936 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000190774 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000188828 - NO_TRANSLATION retained_intron ENSMUSG00000032253 Phip ENSMUST00000187021 - NO_TRANSLATION retained_intron ENSMUSG00000063108 Zfp26 ENSMUST00000161248 - NO_TRANSLATION retained_intron ENSMUSG00000063108 Zfp26 ENSMUST00000098970 - NO_TRANSLATION retained_intron ENSMUSG00000063108 Zfp26 ENSMUST00000162438 ENSMUSP00000123960 TRANSLATION protein_coding stop - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063108 Zfp26 ENSMUST00000160370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063108 Zfp26 ENSMUST00000075263 - NO_TRANSLATION retained_intron ENSMUSG00000063108 Zfp26 ENSMUST00000159569 ENSMUSP00000124075 TRANSLATION protein_coding - CCDS40543.2 1 959.0 84.0 1.0 0.1 529.4 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000041794 Myrip ENSMUST00000129168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041794 Myrip ENSMUST00000139665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041794 Myrip ENSMUST00000048121 ENSMUSP00000046891 TRANSLATION protein_coding - CCDS23627.1 1 856.0 8.0 2.4 5.8 1382.8 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000041794 Myrip ENSMUST00000214784 ENSMUSP00000149149 TRANSLATION protein_coding start/stop - 5 539.0 8.0 1.4 0.0 690.4 0.0 -4,0 0.0271 5 -2.0 MINOR ENSMUSG00000041794 Myrip ENSMUST00000133173 ENSMUSP00000122046 TRANSLATION protein_coding stop - 3 211.0 8.0 2.4 0.0 269.0 0.0 -4,-5 0.0218 4 -2.0 MINOR ENSMUSG00000046240 Hepacam ENSMUST00000051839 ENSMUSP00000054105 TRANSLATION protein_coding - CCDS22976.1 1 418.0 0.0 4.63 12.6 81.6 0.0 -1,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000046240 Hepacam ENSMUST00000215951 ENSMUSP00000150856 TRANSLATION nonsense_mediated_decay - - 3 69.0 0.0 0.3 0.0 0.0 0.0 -1,1 0.0004 - -2.0 MINOR ENSMUSG00000050471 Fam118b ENSMUST00000063782 ENSMUSP00000066281 TRANSLATION protein_coding - CCDS22960.1 1 275.0 0.0 0.0 0.0 59.4 0.0 -4,-5 0.0266 4 4.32 MINOR ENSMUSG00000050471 Fam118b ENSMUST00000121564 ENSMUSP00000113537 TRANSLATION protein_coding - CCDS22961.1 1 351.0 0.0 0.0 15.4 82.5 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000050471 Fam118b ENSMUST00000125124 - NO_TRANSLATION retained_intron ENSMUSG00000050471 Fam118b ENSMUST00000059057 ENSMUSP00000058377 TRANSLATION protein_coding - CCDS22961.1 1 351.0 0.0 0.0 15.4 82.5 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000050471 Fam118b ENSMUST00000125087 ENSMUSP00000119747 TRANSLATION protein_coding stop - 5 268.0 0.0 0.0 0.0 70.6 0.0 -4,-5 0.0028 3 -2.0 MINOR ENSMUSG00000050471 Fam118b ENSMUST00000133739 ENSMUSP00000121690 TRANSLATION protein_coding start - 1 123.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000050471 Fam118b ENSMUST00000217306 ENSMUSP00000149076 TRANSLATION protein_coding stop - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050471 Fam118b ENSMUST00000214230 ENSMUSP00000148906 TRANSLATION nonsense_mediated_decay start - 5 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000050471 Fam118b ENSMUST00000147256 - NO_TRANSLATION retained_intron ENSMUSG00000032452 Clstn2 ENSMUST00000035027 ENSMUSP00000035027 TRANSLATION protein_coding - CCDS40733.1 1 966.0 14.0 2.7 0.4 35.9 1.0 1,-3 0.592 4 18.0 MINOR ENSMUSG00000032452 Clstn2 ENSMUST00000162295 ENSMUSP00000124081 TRANSLATION protein_coding - - 5 960.0 14.0 2.7 7.8 35.9 1.0 1,-3 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000038112 AW551984 ENSMUST00000130829 ENSMUSP00000117262 TRANSLATION protein_coding stop - 2 52.0 0.0 1.0 0.0 26.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000038112 AW551984 ENSMUST00000042485 ENSMUSP00000042582 TRANSLATION protein_coding - CCDS23052.1 1 804.0 5.0 10.94 0.3 194.2 0.0 -4,-7 1.0 17 17.0 PRINCIPAL:1 ENSMUSG00000038112 AW551984 ENSMUST00000147753 - NO_TRANSLATION retained_intron ENSMUSG00000038112 AW551984 ENSMUST00000128054 - NO_TRANSLATION retained_intron ENSMUSG00000038112 AW551984 ENSMUST00000119722 ENSMUSP00000113212 TRANSLATION protein_coding - CCDS23052.1 1 804.0 5.0 10.94 0.3 194.2 0.0 -4,-7 1.0 17 17.0 PRINCIPAL:1 ENSMUSG00000038112 AW551984 ENSMUST00000136814 - NO_TRANSLATION retained_intron ENSMUSG00000038112 AW551984 ENSMUST00000141370 ENSMUSP00000117328 TRANSLATION protein_coding stop - 3 210.0 0.0 2.9 0.0 107.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000032511 Scn5a ENSMUST00000117911 ENSMUSP00000112838 TRANSLATION protein_coding - CCDS52965.1 1 2020.0 0.0 11.25 7.1 1225.8 4.0 -4,0 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000032511 Scn5a ENSMUST00000138934 ENSMUSP00000118250 TRANSLATION protein_coding stop - 3 29.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0074 - -2.0 MINOR ENSMUSG00000032511 Scn5a ENSMUST00000120420 ENSMUSP00000113272 TRANSLATION protein_coding - - 5 2019.0 0.0 11.25 7.1 1221.7 4.0 -4,0 0.8396 - 10.0 ALTERNATIVE:1 ENSMUSG00000032511 Scn5a ENSMUST00000065196 ENSMUSP00000066228 TRANSLATION protein_coding - CCDS57715.1 5 2020.0 0.0 11.25 7.1 1222.0 4.0 -4,0 0.9705 - 10.0 ALTERNATIVE:1 ENSMUSG00000023277 Twf2 ENSMUST00000024047 ENSMUSP00000024047 TRANSLATION protein_coding - CCDS23473.1 1 349.0 0.0 9.16 26.8 131.2 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000023277 Twf2 ENSMUST00000189708 - NO_TRANSLATION retained_intron ENSMUSG00000023277 Twf2 ENSMUST00000216850 ENSMUSP00000150259 TRANSLATION protein_coding start/stop - 5 207.0 0.0 5.58 0.0 108.4 0.0 -4,-6 0.0008 8 -2.0 MINOR ENSMUSG00000023277 Twf2 ENSMUST00000187944 ENSMUSP00000139905 TRANSLATION nonsense_mediated_decay - - 5 48.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023277 Twf2 ENSMUST00000187647 ENSMUSP00000140617 TRANSLATION nonsense_mediated_decay - - 3 71.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023277 Twf2 ENSMUST00000217523 - NO_TRANSLATION retained_intron ENSMUSG00000023277 Twf2 ENSMUST00000216541 - NO_TRANSLATION retained_intron ENSMUSG00000023277 Twf2 ENSMUST00000216348 ENSMUSP00000150626 TRANSLATION protein_coding stop - 5 235.0 0.0 6.33 0.0 43.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000023277 Twf2 ENSMUST00000188650 ENSMUSP00000140339 TRANSLATION protein_coding - - 1 347.0 0.0 8.83 8.0 131.2 0.0 -4,-6 0.3967 12 12.424 MINOR ENSMUSG00000032265 Tent5a ENSMUST00000034802 ENSMUSP00000034802 TRANSLATION protein_coding - CCDS52875.1 3 447.0 0.0 2.0 6.0 527.6 0.0 -4,-5 0.7976 5 10.0 ALTERNATIVE:1 ENSMUSG00000032265 Tent5a ENSMUST00000187711 ENSMUSP00000140869 TRANSLATION protein_coding - CCDS81046.1 1 428.0 0.0 2.0 6.0 527.6 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000023495 Pcbp4 ENSMUST00000190430 ENSMUSP00000140485 TRANSLATION protein_coding stop - 5 113.0 0.0 3.19 0.0 56.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000188448 - NO_TRANSLATION retained_intron ENSMUSG00000023495 Pcbp4 ENSMUST00000214252 ENSMUSP00000148962 TRANSLATION protein_coding stop - 5 190.0 0.0 4.134 0.0 85.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000024260 ENSMUSP00000024260 TRANSLATION protein_coding - CCDS23479.1 1 403.0 0.0 7.684 8.7 183.9 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000023495 Pcbp4 ENSMUST00000190799 - NO_TRANSLATION retained_intron ENSMUSG00000023495 Pcbp4 ENSMUST00000185996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023495 Pcbp4 ENSMUST00000185779 ENSMUSP00000140629 TRANSLATION protein_coding stop - 5 197.0 0.0 5.204 0.0 116.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000189099 ENSMUSP00000139991 TRANSLATION protein_coding start/stop - 1 77.0 0.0 1.99 0.0 38.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000185874 ENSMUSP00000141057 TRANSLATION protein_coding stop - 2 119.0 0.0 3.19 0.0 56.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000215656 ENSMUSP00000149560 TRANSLATION protein_coding stop - 5 158.0 0.0 4.204 0.0 87.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000185854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023495 Pcbp4 ENSMUST00000216379 ENSMUSP00000150869 TRANSLATION protein_coding stop - 5 149.0 0.0 4.18 0.0 99.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000217405 - NO_TRANSLATION retained_intron ENSMUSG00000023495 Pcbp4 ENSMUST00000189882 - NO_TRANSLATION retained_intron ENSMUSG00000023495 Pcbp4 ENSMUST00000190428 ENSMUSP00000139587 TRANSLATION protein_coding start - 2 168.0 0.0 3.834 0.0 67.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000188396 ENSMUSP00000139771 TRANSLATION protein_coding start - 2 215.0 0.0 2.25 0.0 37.0 0.0 -2,-5 0.0 2 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000185507 ENSMUSP00000140660 TRANSLATION nonsense_mediated_decay start - 3 150.0 0.0 2.594 0.0 55.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000185831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023495 Pcbp4 ENSMUST00000187975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023495 Pcbp4 ENSMUST00000186519 - NO_TRANSLATION retained_intron ENSMUSG00000023495 Pcbp4 ENSMUST00000213156 ENSMUSP00000149109 TRANSLATION protein_coding start - 2 222.0 0.0 4.494 0.0 123.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000213201 ENSMUSP00000148973 TRANSLATION nonsense_mediated_decay start - 3 141.0 0.0 2.264 0.0 37.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023495 Pcbp4 ENSMUST00000213752 ENSMUSP00000149974 TRANSLATION nonsense_mediated_decay start - 5 96.0 0.0 1.344 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000035914 Cd276 ENSMUST00000213722 ENSMUSP00000150714 TRANSLATION protein_coding start/stop - 3 145.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035914 Cd276 ENSMUST00000216629 ENSMUSP00000151025 TRANSLATION protein_coding start - 3 94.0 0.0 1.2 0.0 0.0 2.0 -3,-5 0.003 - -2.0 MINOR ENSMUSG00000035914 Cd276 ENSMUST00000039788 ENSMUSP00000042681 TRANSLATION protein_coding - CCDS23244.1 1 316.0 0.0 5.198 2.8 67.6 2.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000035914 Cd276 ENSMUST00000165365 ENSMUSP00000129418 TRANSLATION protein_coding - CCDS23244.1 1 316.0 0.0 5.198 2.8 67.6 2.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057551 Zfp317 ENSMUST00000214731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057551 Zfp317 ENSMUST00000215372 ENSMUSP00000150705 TRANSLATION protein_coding - CCDS22862.1 1 607.0 52.0 0.8 0.1 341.4 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000057551 Zfp317 ENSMUST00000213725 ENSMUSP00000151161 TRANSLATION protein_coding - - 1 518.0 52.0 0.8 0.0 260.6 0.0 -4,-7 0.1326 - 13.152 MINOR ENSMUSG00000057551 Zfp317 ENSMUST00000079042 ENSMUSP00000078051 TRANSLATION protein_coding - CCDS22862.1 2 607.0 52.0 0.8 0.1 341.4 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000057551 Zfp317 ENSMUST00000208694 ENSMUSP00000146876 TRANSLATION protein_coding - CCDS22862.1 1 607.0 52.0 0.8 0.1 341.4 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00001074846 Iqcf3 ENSMUST00010126033 ENSMUSP00001068198 TRANSLATION protein_coding stop - - 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00001074846 Iqcf3 ENSMUST00010126732 ENSMUSP00001068507 TRANSLATION protein_coding stop - - 116.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00001074846 Iqcf3 ENSMUST00010181659 ENSMUSP00001091656 TRANSLATION protein_coding - - - 278.0 0.0 0.79 0.0 49.1 0.0 -4,-5 0.0343 - 4.874 MINOR ENSMUSG00001074846 Iqcf3 ENSMUST00010126032 ENSMUSP00001068197 TRANSLATION protein_coding - CCDS40758.1 - 203.0 0.0 1.65 0.0 20.5 0.0 -4,-5 0.738 - 7.0 PRINCIPAL:2 ENSMUSG00001074846 Iqcf3 ENSMUST00010126065 ENSMUSP00001068220 TRANSLATION protein_coding - - - 174.0 0.0 1.5 0.0 20.5 0.0 -4,-5 0.0039 - 6.454 ALTERNATIVE:2 ENSMUSG00001074846 Iqcf3 ENSMUST00010181660 ENSMUSP00001091657 TRANSLATION protein_coding - - - 161.0 0.0 0.64 0.4 49.1 0.0 -4,-7 0.1013 - 4.328 MINOR ENSMUSG00000032329 Hmg20a ENSMUST00000215269 ENSMUSP00000149698 TRANSLATION protein_coding - CCDS23208.1 1 346.0 0.0 1.8 22.7 68.6 0.0 -3,-4 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000032329 Hmg20a ENSMUST00000217518 ENSMUSP00000149359 TRANSLATION protein_coding - - 1 379.0 0.0 1.8 0.0 68.6 0.0 -3,-4 0.0451 2 12.0 MINOR ENSMUSG00000032329 Hmg20a ENSMUST00000214869 ENSMUSP00000150382 TRANSLATION protein_coding - - 1 101.0 0.0 0.0 0.0 0.0 0.0 -3,-4 0.0 - 0.0 MINOR ENSMUSG00000032329 Hmg20a ENSMUST00000213242 ENSMUSP00000149934 TRANSLATION protein_coding stop - 5 33.0 0.0 0.0 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000032329 Hmg20a ENSMUST00000034879 ENSMUSP00000034879 TRANSLATION protein_coding - CCDS23208.1 1 346.0 0.0 1.8 22.7 68.6 0.0 -3,-4 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000032329 Hmg20a ENSMUST00000214771 ENSMUSP00000149375 TRANSLATION protein_coding - - 1 180.0 0.0 1.0 0.0 44.6 0.0 -3,-4 0.0008 2 7.236 MINOR ENSMUSG00000001946 Esam ENSMUST00000146860 ENSMUSP00000122473 TRANSLATION protein_coding stop - 5 252.0 0.0 5.12 0.0 70.4 1.0 -4,-5 0.0139 5 -2.0 MINOR ENSMUSG00000001946 Esam ENSMUST00000123198 ENSMUSP00000116300 TRANSLATION protein_coding stop - 3 71.0 0.0 0.65 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000001946 Esam ENSMUST00000131832 - NO_TRANSLATION retained_intron ENSMUSG00000001946 Esam ENSMUST00000002011 ENSMUSP00000002011 TRANSLATION protein_coding - CCDS22979.1 1 394.0 0.0 5.65 0.0 70.4 1.0 0,-3 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000001946 Esam ENSMUST00000144596 ENSMUSP00000114632 TRANSLATION protein_coding stop - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000001946 Esam ENSMUST00000214142 ENSMUSP00000149283 TRANSLATION nonsense_mediated_decay start - 5 28.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032356 Rasgrf1 ENSMUST00000190073 - NO_TRANSLATION retained_intron ENSMUSG00000032356 Rasgrf1 ENSMUST00000034909 ENSMUSP00000034909 TRANSLATION protein_coding - CCDS40723.1 1 178.0 10.0 0.4 0.1 32.2 0.0 -4,-6 0.0272 1 4.668 MINOR ENSMUSG00000032356 Rasgrf1 ENSMUST00000189545 ENSMUSP00000140921 TRANSLATION protein_coding - - 1 153.0 10.0 0.4 0.0 32.2 0.0 -4,-6 0.0 1 4.668 MINOR ENSMUSG00000032356 Rasgrf1 ENSMUST00000034912 ENSMUSP00000034912 TRANSLATION protein_coding - CCDS40722.1 1 1262.0 12.0 11.68 0.0 448.0 0.0 -4,-6 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000032375 Aph1b ENSMUST00000034934 ENSMUSP00000034934 TRANSLATION protein_coding - CCDS23307.1 1 257.0 0.0 5.75 20.5 297.2 11.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032375 Aph1b ENSMUST00000113730 ENSMUSP00000109359 TRANSLATION protein_coding - - 5 216.0 0.0 4.75 2.2 215.6 8.0 1,-3 0.0331 1 5.354 MINOR ENSMUSG00000032375 Aph1b ENSMUST00000168309 ENSMUSP00000125816 TRANSLATION nonsense_mediated_decay - - 1 212.0 0.0 3.75 0.0 210.4 6.0 1,-3 0.0066 1 -2.0 MINOR ENSMUSG00000053199 Arhgap20 ENSMUST00000126567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053199 Arhgap20 ENSMUST00000149754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053199 Arhgap20 ENSMUST00000130405 ENSMUSP00000120124 TRANSLATION protein_coding - - 5 1146.0 0.0 4.2 0.1 185.6 0.0 -4,-1 1.0 8 8.0 PRINCIPAL:4 ENSMUSG00000053199 Arhgap20 ENSMUST00000124907 - NO_TRANSLATION retained_intron ENSMUSG00000053199 Arhgap20 ENSMUST00000146509 - NO_TRANSLATION retained_intron ENSMUSG00000053199 Arhgap20 ENSMUST00000065496 ENSMUSP00000065633 TRANSLATION protein_coding - CCDS23177.1 5 1182.0 0.0 4.2 0.3 185.6 0.0 -4,-5 0.8321 8 8.0 ALTERNATIVE:2 ENSMUSG00000032311 Nrg4 ENSMUST00000114306 - NO_TRANSLATION retained_intron ENSMUSG00000032311 Nrg4 ENSMUST00000145784 ENSMUSP00000115851 TRANSLATION nonsense_mediated_decay - - 2 80.0 3.0 0.6 0.0 0.0 0.0 -4,-7 0.0135 - -2.0 MINOR ENSMUSG00000032311 Nrg4 ENSMUST00000126368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032311 Nrg4 ENSMUST00000144939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032311 Nrg4 ENSMUST00000156112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032311 Nrg4 ENSMUST00000133659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032311 Nrg4 ENSMUST00000135531 ENSMUSP00000114412 TRANSLATION nonsense_mediated_decay - - 1 37.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0171 - -2.0 MINOR ENSMUSG00000032311 Nrg4 ENSMUST00000137675 ENSMUSP00000114336 TRANSLATION nonsense_mediated_decay - - 1 37.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0171 - -2.0 MINOR ENSMUSG00000032311 Nrg4 ENSMUST00000134183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032311 Nrg4 ENSMUST00000130158 ENSMUSP00000115247 TRANSLATION protein_coding - CCDS52801.1 5 115.0 4.0 1.1 3.7 0.0 1.0 -4,-6 1.0 - 11.0 PRINCIPAL:1 ENSMUSG00000032311 Nrg4 ENSMUST00000128020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032311 Nrg4 ENSMUST00000164721 ENSMUSP00000130929 TRANSLATION protein_coding - CCDS52801.1 5 115.0 4.0 1.1 3.7 0.0 1.0 -4,-6 1.0 - 11.0 PRINCIPAL:1 ENSMUSG00000032311 Nrg4 ENSMUST00000139261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000103409 Lsmem2 ENSMUST00000191791 - NO_TRANSLATION retained_intron ENSMUSG00000103409 Lsmem2 ENSMUST00000238519 ENSMUSP00000158647 TRANSLATION protein_coding - - - 150.0 0.0 1.6 8.2 265.5 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000033590 Myo5c ENSMUST00000215352 - NO_TRANSLATION retained_intron ENSMUSG00000033590 Myo5c ENSMUST00000216788 ENSMUSP00000150730 TRANSLATION nonsense_mediated_decay - - 1 269.0 16.0 5.41 0.0 305.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033590 Myo5c ENSMUST00000036555 ENSMUSP00000042229 TRANSLATION protein_coding - CCDS40691.1 5 1742.0 17.0 25.34 14.0 1091.3 0.0 -4,-5 1.0 27 22.0 PRINCIPAL:1 ENSMUSG00000033590 Myo5c ENSMUST00000216529 - NO_TRANSLATION retained_intron ENSMUSG00000033590 Myo5c ENSMUST00000215620 - NO_TRANSLATION retained_intron ENSMUSG00000033590 Myo5c ENSMUST00000215437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033590 Myo5c ENSMUST00000213424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070284 Gmppb ENSMUST00000047947 ENSMUSP00000036898 TRANSLATION protein_coding - CCDS23515.1 1 360.0 25.0 8.0 32.6 36.9 0.0 -4,-1 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000070284 Gmppb ENSMUST00000145330 - NO_TRANSLATION retained_intron ENSMUSG00000070284 Gmppb ENSMUST00000137284 - NO_TRANSLATION retained_intron ENSMUSG00000070284 Gmppb ENSMUST00000112295 ENSMUSP00000107914 TRANSLATION protein_coding - CCDS23515.1 1 360.0 25.0 8.0 32.6 36.9 0.0 -4,-1 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000070284 Gmppb ENSMUST00000150700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032537 Ephb1 ENSMUST00000215514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032537 Ephb1 ENSMUST00000217184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032537 Ephb1 ENSMUST00000149800 ENSMUSP00000139470 TRANSLATION protein_coding - - 1 456.0 0.0 4.05 0.0 291.7 0.0 3,-2 0.0004 8 0.0 MINOR ENSMUSG00000032537 Ephb1 ENSMUST00000217014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032537 Ephb1 ENSMUST00000085169 ENSMUSP00000082261 TRANSLATION protein_coding - CCDS52901.1 1 943.0 18.0 11.265 0.0 744.1 1.0 3,-2 0.1344 10 10.248 MINOR ENSMUSG00000032537 Ephb1 ENSMUST00000035129 ENSMUSP00000035129 TRANSLATION protein_coding - CCDS40742.1 1 984.0 19.0 12.265 17.1 828.9 1.0 3,-2 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000050853 Or10d3 ENSMUST00000215505 ENSMUSP00000149018 TRANSLATION protein_coding - CCDS23050.1 5 312.0 0.0 1.0 11.5 165.1 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050853 Or10d3 ENSMUST00000217227 ENSMUSP00000149788 TRANSLATION protein_coding - CCDS23050.1 5 312.0 0.0 1.0 11.5 165.1 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050853 Or10d3 ENSMUST00000062545 ENSMUSP00000049930 TRANSLATION protein_coding - CCDS23050.1 - 312.0 0.0 1.0 11.5 165.1 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031969 Acad8 ENSMUST00000132293 ENSMUSP00000123012 TRANSLATION nonsense_mediated_decay - - 3 49.0 0.0 0.15 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000031969 Acad8 ENSMUST00000129490 - NO_TRANSLATION retained_intron ENSMUSG00000031969 Acad8 ENSMUST00000120367 ENSMUSP00000112908 TRANSLATION protein_coding - - 5 413.0 29.0 9.48 7.7 333.6 0.0 -4,0 0.8799 17 16.0 ALTERNATIVE:1 ENSMUSG00000031969 Acad8 ENSMUST00000215693 ENSMUSP00000150728 TRANSLATION nonsense_mediated_decay start - 5 66.0 0.0 0.9 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000031969 Acad8 ENSMUST00000128923 ENSMUSP00000122444 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.15 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000031969 Acad8 ENSMUST00000151075 - NO_TRANSLATION retained_intron ENSMUSG00000031969 Acad8 ENSMUST00000138102 - NO_TRANSLATION retained_intron ENSMUSG00000031969 Acad8 ENSMUST00000060513 ENSMUSP00000054370 TRANSLATION protein_coding - CCDS40567.1 1 413.0 29.0 9.48 7.7 332.5 0.0 -4,0 1.0 18 16.0 PRINCIPAL:3 ENSMUSG00000032101 Ddx25 ENSMUST00000034612 ENSMUSP00000034612 TRANSLATION protein_coding - CCDS52753.1 1 484.0 14.0 8.5 11.4 197.9 0.0 -4,-7 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000049556 Lingo1 ENSMUST00000210332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049556 Lingo1 ENSMUST00000210032 ENSMUSP00000148179 TRANSLATION protein_coding - CCDS23209.1 5 614.0 0.0 1.0 28.5 174.6 1.0 2,-2 1.0 14 12.0 PRINCIPAL:4 ENSMUSG00000049556 Lingo1 ENSMUST00000114247 ENSMUSP00000109885 TRANSLATION protein_coding - CCDS23209.1 1 614.0 0.0 1.0 28.5 174.6 1.0 2,-2 1.0 14 12.0 PRINCIPAL:4 ENSMUSG00000049556 Lingo1 ENSMUST00000114256 ENSMUSP00000109894 TRANSLATION protein_coding - CCDS81004.1 1 620.0 0.0 1.0 21.9 174.6 1.0 0,-2 0.9366 14 11.04 ALTERNATIVE:1 ENSMUSG00000049556 Lingo1 ENSMUST00000210995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049556 Lingo1 ENSMUST00000209596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049556 Lingo1 ENSMUST00000209332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049556 Lingo1 ENSMUST00000053568 ENSMUSP00000059050 TRANSLATION protein_coding - CCDS23209.1 1 614.0 0.0 1.0 28.5 174.6 1.0 2,-2 1.0 14 12.0 PRINCIPAL:4 ENSMUSG00000059547 Fbxw26 ENSMUST00000071917 ENSMUSP00000071811 TRANSLATION protein_coding - CCDS40776.1 1 466.0 0.0 1.31 0.0 41.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000034452 Slc24a1 ENSMUST00000037798 ENSMUSP00000035616 TRANSLATION protein_coding - CCDS23283.1 1 1130.0 0.0 1.0 0.0 201.7 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000105589 Fbxw14 ENSMUST00000198844 ENSMUSP00000143404 TRANSLATION protein_coding - CCDS23550.1 1 466.0 0.0 1.44 0.0 41.7 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000105589 Fbxw14 ENSMUST00000198928 ENSMUSP00000142991 TRANSLATION protein_coding stop - 3 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000105589 Fbxw14 ENSMUST00000112041 ENSMUSP00000107672 TRANSLATION protein_coding - CCDS81079.1 1 413.0 0.0 1.44 0.0 41.7 0.0 -4,-7 0.3475 - 8.0 ALTERNATIVE:2 ENSMUSG00000105589 Fbxw14 ENSMUST00000198048 ENSMUSP00000143127 TRANSLATION protein_coding start - 5 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032482 Cspg5 ENSMUST00000196176 - NO_TRANSLATION retained_intron ENSMUSG00000032482 Cspg5 ENSMUST00000197850 ENSMUSP00000143005 TRANSLATION protein_coding - - 5 569.0 0.0 1.0 0.0 529.8 3.0 0,-3 0.178 4 6.0 MINOR ENSMUSG00000032482 Cspg5 ENSMUST00000199736 ENSMUSP00000142845 TRANSLATION protein_coding - - 1 458.0 0.0 1.0 0.0 415.3 3.0 -4,-5 0.0471 4 6.0 MINOR ENSMUSG00000032482 Cspg5 ENSMUST00000035058 ENSMUSP00000035058 TRANSLATION protein_coding - CCDS52936.1 1 566.0 0.0 1.0 0.0 632.2 3.0 0,-3 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000032482 Cspg5 ENSMUST00000196060 ENSMUSP00000143164 TRANSLATION protein_coding - CCDS81085.1 1 539.0 0.0 1.0 0.0 482.5 3.0 0,-3 0.2814 5 6.0 MINOR ENSMUSG00000035274 Tpbg ENSMUST00000185559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035274 Tpbg ENSMUST00000098500 ENSMUSP00000096101 TRANSLATION protein_coding - CCDS23380.1 1 426.0 0.0 1.0 8.0 122.8 1.0 -1,-4 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000035274 Tpbg ENSMUST00000006559 ENSMUSP00000006559 TRANSLATION protein_coding - CCDS23380.1 1 426.0 0.0 1.0 8.0 122.8 1.0 -1,-4 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000032115 Hyou1 ENSMUST00000161318 ENSMUSP00000123700 TRANSLATION protein_coding - CCDS23107.1 5 999.0 20.0 8.767 9.8 355.6 0.0 2,-2 1.0 36 21.0 PRINCIPAL:1 ENSMUSG00000032115 Hyou1 ENSMUST00000217019 ENSMUSP00000148882 TRANSLATION protein_coding stop - 3 153.0 4.0 2.27 0.0 55.8 0.0 2,-2 0.0009 7 -2.0 MINOR ENSMUSG00000032115 Hyou1 ENSMUST00000160112 - NO_TRANSLATION retained_intron ENSMUSG00000032115 Hyou1 ENSMUST00000162560 ENSMUSP00000123749 TRANSLATION nonsense_mediated_decay - - 5 172.0 4.0 2.936 0.0 64.7 0.0 2,-2 0.0009 7 -2.0 MINOR ENSMUSG00000032115 Hyou1 ENSMUST00000161537 - NO_TRANSLATION retained_intron ENSMUSG00000032115 Hyou1 ENSMUST00000159473 ENSMUSP00000124177 TRANSLATION protein_coding start/stop - 5 227.0 10.0 3.0 0.0 124.1 0.0 2,-2 0.0009 9 -2.0 MINOR ENSMUSG00000032115 Hyou1 ENSMUST00000066601 ENSMUSP00000068594 TRANSLATION protein_coding - CCDS23107.1 1 999.0 20.0 8.767 9.8 355.6 0.0 2,-2 1.0 36 21.0 PRINCIPAL:1 ENSMUSG00000032115 Hyou1 ENSMUST00000160902 ENSMUSP00000125594 TRANSLATION protein_coding - CCDS23107.1 5 999.0 20.0 8.767 9.8 355.6 0.0 2,-2 1.0 36 21.0 PRINCIPAL:1 ENSMUSG00000032115 Hyou1 ENSMUST00000161147 - NO_TRANSLATION retained_intron ENSMUSG00000006932 Ctnnb1 ENSMUST00000156911 - NO_TRANSLATION retained_intron ENSMUSG00000006932 Ctnnb1 ENSMUST00000215573 - NO_TRANSLATION retained_intron ENSMUSG00000006932 Ctnnb1 ENSMUST00000133689 ENSMUSP00000128564 TRANSLATION protein_coding start - 2 174.0 0.0 4.08 0.0 28.6 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000006932 Ctnnb1 ENSMUST00000169931 ENSMUSP00000128858 TRANSLATION protein_coding start/stop - 3 169.0 0.0 3.83 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000006932 Ctnnb1 ENSMUST00000178812 ENSMUSP00000136294 TRANSLATION protein_coding - CCDS23630.1 1 781.0 0.0 17.32 36.2 110.7 0.0 -4,-5 1.0 24 16.0 PRINCIPAL:1 ENSMUSG00000006932 Ctnnb1 ENSMUST00000130845 ENSMUSP00000116365 TRANSLATION nonsense_mediated_decay - - 5 83.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006932 Ctnnb1 ENSMUST00000170729 ENSMUSP00000130471 TRANSLATION nonsense_mediated_decay start - 5 145.0 0.0 2.08 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000006932 Ctnnb1 ENSMUST00000145093 ENSMUSP00000120132 TRANSLATION protein_coding stop - 3 174.0 0.0 4.24 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000006932 Ctnnb1 ENSMUST00000154687 - NO_TRANSLATION retained_intron ENSMUSG00000006932 Ctnnb1 ENSMUST00000130466 ENSMUSP00000116969 TRANSLATION protein_coding stop - 3 42.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006932 Ctnnb1 ENSMUST00000126633 - NO_TRANSLATION retained_intron ENSMUSG00000006932 Ctnnb1 ENSMUST00000154356 ENSMUSP00000125763 TRANSLATION nonsense_mediated_decay - - 5 607.0 0.0 13.74 0.0 82.1 0.0 -4,-5 0.0019 19 -2.0 MINOR ENSMUSG00000006932 Ctnnb1 ENSMUST00000007130 ENSMUSP00000007130 TRANSLATION protein_coding - CCDS23630.1 1 781.0 0.0 17.32 36.2 110.7 0.0 -4,-5 1.0 24 16.0 PRINCIPAL:1 ENSMUSG00000006932 Ctnnb1 ENSMUST00000163844 ENSMUSP00000126905 TRANSLATION nonsense_mediated_decay - - 5 90.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006932 Ctnnb1 ENSMUST00000139138 - NO_TRANSLATION retained_intron ENSMUSG00000034739 Mfrp ENSMUST00000206722 ENSMUSP00000146138 TRANSLATION protein_coding start/stop - 5 187.0 6.0 2.482 0.0 74.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034739 Mfrp ENSMUST00000034654 ENSMUSP00000034654 TRANSLATION protein_coding - CCDS40597.1 1 584.0 17.0 6.52912 6.1 294.8 2.0 -4,-5 1.0 1 15.736 PRINCIPAL:4 ENSMUSG00000034739 Mfrp ENSMUST00000206308 ENSMUSP00000145676 TRANSLATION protein_coding - - 5 584.0 17.0 6.66112 6.1 294.8 2.0 -4,-5 0.8339 1 16.0 ALTERNATIVE:1 ENSMUSG00000034739 Mfrp ENSMUST00000161381 ENSMUSP00000124456 TRANSLATION protein_coding - CCDS52776.1 1 578.0 17.0 6.33112 1.1 294.8 2.0 -4,-5 0.3483 1 13.38 MINOR ENSMUSG00000034739 Mfrp ENSMUST00000161703 ENSMUSP00000125053 TRANSLATION nonsense_mediated_decay - - 5 324.0 9.0 2.52712 0.0 118.6 2.0 -4,-5 0.0004 1 -2.0 MINOR ENSMUSG00000034739 Mfrp ENSMUST00000205282 ENSMUSP00000145633 TRANSLATION nonsense_mediated_decay - - 5 107.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000062649 Or8g20 ENSMUST00000077757 ENSMUSP00000076935 TRANSLATION protein_coding - CCDS23048.1 3 314.0 0.0 1.0 11.4 169.2 7.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000062649 Or8g20 ENSMUST00000216316 ENSMUSP00000150827 TRANSLATION protein_coding - - 3 311.0 0.0 1.0 11.4 169.2 7.0 -4,-7 0.8821 - 11.0 ALTERNATIVE:1 ENSMUSG00000062649 Or8g20 ENSMUST00000215065 ENSMUSP00000148986 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 11.4 169.2 7.0 -4,-7 0.8821 - 11.0 ALTERNATIVE:1 ENSMUSG00000118653 Gm2296 ENSMUST00000239472 ENSMUSP00000159342 TRANSLATION protein_coding - - - 223.0 0.0 1.0 6.6 138.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047606 Ankrd34c ENSMUST00000185470 ENSMUSP00000140919 TRANSLATION protein_coding - CCDS23397.1 1 534.0 0.0 0.5 10.0 50.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000047606 Ankrd34c ENSMUST00000060700 ENSMUSP00000056787 TRANSLATION protein_coding - CCDS23397.1 1 534.0 0.0 0.5 10.0 50.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000031934 Panx1 ENSMUST00000166933 - NO_TRANSLATION retained_intron ENSMUSG00000031934 Panx1 ENSMUST00000056755 ENSMUSP00000053557 TRANSLATION nonsense_mediated_decay - - 1 112.0 0.0 2.0 0.0 0.0 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000031934 Panx1 ENSMUST00000164273 ENSMUSP00000126405 TRANSLATION protein_coding - CCDS22832.1 1 426.0 0.0 4.95 9.5 50.4 4.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000031934 Panx1 ENSMUST00000169288 ENSMUSP00000132764 TRANSLATION protein_coding stop - 3 22.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048503 Tlcd5 ENSMUST00000213544 ENSMUSP00000150692 TRANSLATION protein_coding - CCDS23090.1 1 245.0 0.0 3.0 18.5 55.1 7.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048503 Tlcd5 ENSMUST00000213648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048503 Tlcd5 ENSMUST00000216126 ENSMUSP00000149500 TRANSLATION protein_coding stop - 3 209.0 0.0 2.0 0.0 45.5 6.0 0,-4 0.0088 - -2.0 MINOR ENSMUSG00000048503 Tlcd5 ENSMUST00000061833 ENSMUSP00000051435 TRANSLATION protein_coding - CCDS23090.1 1 245.0 0.0 3.0 18.5 55.1 7.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000052625 Or7g32 ENSMUST00000064582 ENSMUSP00000066500 TRANSLATION protein_coding - CCDS22859.1 - 312.0 0.0 1.0 7.7 183.2 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000052625 Or7g32 ENSMUST00000214130 ENSMUSP00000149033 TRANSLATION protein_coding - CCDS22859.1 5 312.0 0.0 1.0 7.7 183.2 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047352 Or10d5j ENSMUST00000217360 ENSMUSP00000151213 TRANSLATION protein_coding - - - 314.0 0.0 1.0 8.5 164.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047352 Or10d5j ENSMUST00000169307 ENSMUSP00000133083 TRANSLATION protein_coding - CCDS23068.1 - 326.0 0.0 1.0 0.0 164.3 6.0 -4,-7 0.3549 - 12.0 MINOR ENSMUSG00000047352 Or10d5j ENSMUST00000213171 ENSMUSP00000150077 TRANSLATION protein_coding - - 1 314.0 0.0 1.0 8.5 164.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047352 Or10d5j ENSMUST00000217630 ENSMUSP00000150494 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 8.5 164.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063849 Ppcdc ENSMUST00000214624 ENSMUSP00000150738 TRANSLATION protein_coding - - 1 48.0 4.0 1.33 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000214166 ENSMUSP00000149381 TRANSLATION protein_coding stop - 3 52.0 4.0 1.33 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000214065 ENSMUSP00000148870 TRANSLATION protein_coding stop - 5 133.0 10.0 4.16 0.0 116.1 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000215883 ENSMUSP00000150577 TRANSLATION protein_coding stop - 3 62.0 4.0 1.83 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000213194 ENSMUSP00000149653 TRANSLATION nonsense_mediated_decay - - 3 36.0 4.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000214339 ENSMUSP00000149007 TRANSLATION protein_coding - - 2 46.0 4.0 1.33 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000214519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063849 Ppcdc ENSMUST00000216365 ENSMUSP00000149389 TRANSLATION nonsense_mediated_decay - - 1 125.0 10.0 3.66 0.0 108.1 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000214144 ENSMUSP00000150210 TRANSLATION protein_coding - - 1 146.0 14.0 3.72534 0.0 111.1 0.0 -4,-7 0.0 7 9.882 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000217255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063849 Ppcdc ENSMUST00000213479 ENSMUSP00000148917 TRANSLATION nonsense_mediated_decay - - 1 48.0 4.0 1.33 0.0 63.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000215299 ENSMUSP00000150385 TRANSLATION protein_coding stop - 2 80.0 8.0 2.33 0.0 49.8 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000215961 ENSMUSP00000150007 TRANSLATION protein_coding start - 2 142.0 14.0 3.72534 0.0 111.1 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000063849 Ppcdc ENSMUST00000085709 ENSMUSP00000082856 TRANSLATION protein_coding - CCDS23221.1 1 204.0 13.0 5.91 6.1 173.6 0.0 -4,-7 1.0 11 19.334 PRINCIPAL:1 ENSMUSG00000032135 Mcam ENSMUST00000216002 ENSMUSP00000149002 TRANSLATION protein_coding stop - 2 142.0 0.0 1.98 0.0 31.7 0.0 1,-2 0.0008 4 -2.0 MINOR ENSMUSG00000032135 Mcam ENSMUST00000149241 ENSMUSP00000121090 TRANSLATION nonsense_mediated_decay - - 5 146.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000032135 Mcam ENSMUST00000034650 ENSMUSP00000034650 TRANSLATION protein_coding - CCDS23097.1 1 648.0 0.0 9.389 5.0 195.9 1.0 1,-2 1.0 24 10.0 PRINCIPAL:2 ENSMUSG00000032135 Mcam ENSMUST00000132490 - NO_TRANSLATION retained_intron ENSMUSG00000032135 Mcam ENSMUST00000147836 ENSMUSP00000117924 TRANSLATION protein_coding start/stop - 2 149.0 0.0 1.74 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032135 Mcam ENSMUST00000098852 ENSMUSP00000096451 TRANSLATION protein_coding - - 1 606.0 0.0 9.389 3.1 195.9 1.0 1,-2 0.5935 20 9.05 ALTERNATIVE:2 ENSMUSG00000042444 Mindy2 ENSMUST00000213380 ENSMUSP00000150300 TRANSLATION protein_coding - - 1 600.0 0.0 5.5 0.4 132.0 0.0 -4,-5 0.7504 8 8.0 ALTERNATIVE:2 ENSMUSG00000042444 Mindy2 ENSMUST00000214293 - NO_TRANSLATION retained_intron ENSMUSG00000042444 Mindy2 ENSMUST00000049031 ENSMUSP00000037035 TRANSLATION protein_coding - CCDS40681.1 1 601.0 0.0 5.5 0.4 132.0 0.0 -4,-5 0.9873 8 8.0 PRINCIPAL:4 ENSMUSG00000032060 Cryab ENSMUST00000034562 ENSMUSP00000034562 TRANSLATION protein_coding - CCDS23172.1 1 175.0 0.0 3.75 21.7 189.7 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000032060 Cryab ENSMUST00000217475 ENSMUSP00000149803 TRANSLATION protein_coding - CCDS23172.1 1 175.0 0.0 3.75 21.7 189.7 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000032060 Cryab ENSMUST00000216755 ENSMUSP00000150669 TRANSLATION protein_coding - CCDS23172.1 1 175.0 0.0 3.75 21.7 189.7 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000032060 Cryab ENSMUST00000216393 - NO_TRANSLATION retained_intron ENSMUSG00000032060 Cryab ENSMUST00000214962 ENSMUSP00000149759 TRANSLATION protein_coding - CCDS23172.1 1 175.0 0.0 3.75 21.7 189.7 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000032060 Cryab ENSMUST00000214609 ENSMUSP00000149454 TRANSLATION protein_coding stop - 5 130.0 0.0 2.75 0.0 161.2 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000058692 Or7g28 ENSMUST00000078774 ENSMUSP00000077830 TRANSLATION protein_coding - CCDS22855.1 - 312.0 0.0 1.0 7.2 182.7 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058692 Or7g28 ENSMUST00000214810 ENSMUSP00000150672 TRANSLATION protein_coding - CCDS22855.1 5 312.0 0.0 1.0 7.2 182.7 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049073 Or8d4 ENSMUST00000214981 ENSMUSP00000149371 TRANSLATION protein_coding - CCDS23076.1 3 311.0 0.0 1.0 12.5 189.8 3.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049073 Or8d4 ENSMUST00000060345 ENSMUSP00000058372 TRANSLATION protein_coding - CCDS23076.1 - 311.0 0.0 1.0 12.5 189.8 3.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042138 Msantd2 ENSMUST00000211224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042138 Msantd2 ENSMUST00000211060 ENSMUSP00000148195 TRANSLATION protein_coding - - 3 358.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 3 0.0 MINOR ENSMUSG00000042138 Msantd2 ENSMUST00000211792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042138 Msantd2 ENSMUST00000213411 - NO_TRANSLATION retained_intron ENSMUSG00000042138 Msantd2 ENSMUST00000214298 ENSMUSP00000148883 TRANSLATION protein_coding start/stop - 2 141.0 0.0 0.0 0.0 58.2 0.0 -4,-6 0.0006 3 -2.0 MINOR ENSMUSG00000042138 Msantd2 ENSMUST00000239463 ENSMUSP00000159374 TRANSLATION protein_coding - CCDS22978.1 - 559.0 0.0 0.0 6.6 75.8 0.0 -4,-5 1.0 8 2.0 PRINCIPAL:2 ENSMUSG00000042138 Msantd2 ENSMUST00000239459 ENSMUSP00000159310 TRANSLATION protein_coding - - - 647.0 0.0 0.0 4.8 75.8 0.0 -4,0 0.5607 8 1.358 ALTERNATIVE:1 ENSMUSG00000042138 Msantd2 ENSMUST00000209391 ENSMUSP00000148126 TRANSLATION nonsense_mediated_decay start - 2 94.0 0.0 0.0 0.0 54.9 0.0 -4,-6 0.0011 3 -2.0 MINOR ENSMUSG00000042138 Msantd2 ENSMUST00000048604 ENSMUSP00000043329 TRANSLATION protein_coding - CCDS22978.1 1 559.0 0.0 0.0 6.6 75.8 0.0 -4,-5 1.0 8 2.0 PRINCIPAL:2 ENSMUSG00000042138 Msantd2 ENSMUST00000209769 - NO_TRANSLATION retained_intron ENSMUSG00000064110 Or10d4 ENSMUST00000073433 ENSMUSP00000073139 TRANSLATION protein_coding - CCDS23056.1 - 311.0 0.0 1.0 8.6 167.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000064110 Or10d4 ENSMUST00000215649 ENSMUSP00000148985 TRANSLATION protein_coding - CCDS23056.1 5 311.0 0.0 1.0 8.6 167.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032357 Tinag ENSMUST00000184897 ENSMUSP00000139155 TRANSLATION nonsense_mediated_decay - - 1 169.0 0.0 0.9 0.0 29.0 0.0 -2,-5 0.0 4 -2.0 MINOR ENSMUSG00000032357 Tinag ENSMUST00000034911 ENSMUSP00000034911 TRANSLATION protein_coding - CCDS23351.1 1 475.0 3.0 4.562 9.0 199.5 0.0 -2,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000025241 Fyco1 ENSMUST00000167595 ENSMUSP00000133222 TRANSLATION protein_coding - CCDS40819.1 5 1437.0 8.0 7.575 0.0 86.7 0.0 -4,-5 1.0 30 18.0 PRINCIPAL:1 ENSMUSG00000025241 Fyco1 ENSMUST00000084715 ENSMUSP00000081764 TRANSLATION protein_coding - CCDS40819.1 1 1437.0 8.0 7.575 0.0 86.7 0.0 -4,-5 1.0 30 18.0 PRINCIPAL:1 ENSMUSG00000025241 Fyco1 ENSMUST00000183700 - NO_TRANSLATION retained_intron ENSMUSG00000025241 Fyco1 ENSMUST00000184082 ENSMUSP00000139343 TRANSLATION protein_coding stop - 1 866.0 0.0 4.5 0.0 36.1 0.0 -4,-5 0.007 24 -2.0 MINOR ENSMUSG00000025241 Fyco1 ENSMUST00000216136 - NO_TRANSLATION retained_intron ENSMUSG00000047766 Lrrc49 ENSMUST00000065603 ENSMUSP00000070606 TRANSLATION protein_coding - CCDS23257.1 1 752.0 0.0 4.8 10.3 63.8 0.0 -4,-2 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000047766 Lrrc49 ENSMUST00000128877 - NO_TRANSLATION retained_intron ENSMUSG00000047766 Lrrc49 ENSMUST00000053171 ENSMUSP00000057014 TRANSLATION protein_coding - - 1 392.0 0.0 0.7 5.4 0.0 0.0 -4,-6 0.3263 7 1.419 MINOR ENSMUSG00000047766 Lrrc49 ENSMUST00000150060 ENSMUSP00000118205 TRANSLATION nonsense_mediated_decay - - 1 362.0 0.0 4.8 0.0 63.8 0.0 -4,-2 0.0587 7 -2.0 MINOR ENSMUSG00000047766 Lrrc49 ENSMUST00000166168 ENSMUSP00000128842 TRANSLATION protein_coding - CCDS52821.1 5 746.0 0.0 4.8 0.3 62.5 0.0 -4,-2 0.401 13 8.0 MINOR ENSMUSG00000047766 Lrrc49 ENSMUST00000114032 ENSMUSP00000109666 TRANSLATION protein_coding - CCDS81016.1 1 680.0 0.0 4.8 0.3 62.5 0.0 -4,-2 0.2793 13 8.0 MINOR ENSMUSG00000047766 Lrrc49 ENSMUST00000114034 ENSMUSP00000109668 TRANSLATION protein_coding - CCDS52822.1 1 686.0 0.0 4.8 9.9 62.5 0.0 -4,-2 0.9052 14 10.871 ALTERNATIVE:1 ENSMUSG00000047766 Lrrc49 ENSMUST00000136388 - NO_TRANSLATION retained_intron ENSMUSG00000047766 Lrrc49 ENSMUST00000132366 ENSMUSP00000121491 TRANSLATION protein_coding stop - 2 122.0 0.0 0.2 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000047766 Lrrc49 ENSMUST00000150398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032122 Slc37a2 ENSMUST00000115068 ENSMUSP00000110720 TRANSLATION protein_coding - CCDS40582.1 1 501.0 0.0 0.51 15.5 135.7 10.0 -3,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000032122 Slc37a2 ENSMUST00000161114 ENSMUSP00000124569 TRANSLATION protein_coding - CCDS52769.1 1 506.0 0.0 0.51 9.9 135.7 10.0 -3,-2 0.9169 4 14.456 MINOR ENSMUSG00000032122 Slc37a2 ENSMUST00000162018 - NO_TRANSLATION retained_intron ENSMUSG00000010051 Hyal1 ENSMUST00000010195 ENSMUSP00000010195 TRANSLATION protein_coding - CCDS23497.1 1 462.0 0.0 4.33 0.3 438.0 0.0 -1,1 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000010051 Hyal1 ENSMUST00000112387 ENSMUSP00000108006 TRANSLATION protein_coding - - 1 458.0 0.0 4.0 0.0 438.0 0.0 -1,1 0.2038 2 7.34 ALTERNATIVE:2 ENSMUSG00000010051 Hyal1 ENSMUST00000184695 - NO_TRANSLATION retained_intron ENSMUSG00000010051 Hyal1 ENSMUST00000123005 ENSMUSP00000122601 TRANSLATION protein_coding - - 3 182.0 0.0 3.33 0.0 101.4 0.0 -4,-2 0.0 - 4.002 MINOR ENSMUSG00000010051 Hyal1 ENSMUST00000144392 ENSMUSP00000120599 TRANSLATION protein_coding - - 5 432.0 0.0 3.33 0.0 364.6 0.0 -1,1 0.0028 2 4.002 MINOR ENSMUSG00000032199 Polr2m ENSMUST00000034720 ENSMUSP00000034720 TRANSLATION protein_coding - CCDS23326.1 1 366.0 0.0 0.0 2.4 246.2 0.0 -4,-5 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000032199 Polr2m ENSMUST00000169804 ENSMUSP00000126403 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032199 Polr2m ENSMUST00000163972 ENSMUSP00000132335 TRANSLATION protein_coding - CCDS52853.1 1 262.0 0.0 0.0 0.7 114.6 0.0 -4,-5 0.0421 5 0.0 MINOR ENSMUSG00000032199 Polr2m ENSMUST00000233263 ENSMUSP00000156800 TRANSLATION protein_coding - - - 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000092310 Gm20509 ENSMUST00000174203 ENSMUSP00000134473 TRANSLATION protein_coding,RT - - 5 386.0 0.0 6.75 0.0 162.2 0.0 -4,-6 0.7485 - -2.0 PRINCIPAL:1 ENSMUSG00000061165 Or8a1b ENSMUST00000211952 ENSMUSP00000148600 TRANSLATION protein_coding - CCDS40586.1 3 309.0 0.0 1.0 12.5 162.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061165 Or8a1b ENSMUST00000215727 ENSMUSP00000151178 TRANSLATION protein_coding - CCDS40586.1 5 309.0 0.0 1.0 12.5 162.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061165 Or8a1b ENSMUST00000104875 ENSMUSP00000100468 TRANSLATION protein_coding - CCDS40586.1 - 309.0 0.0 1.0 12.5 162.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003402 Prkcsh ENSMUST00000216344 ENSMUSP00000149936 TRANSLATION protein_coding - CCDS22918.1 1 521.0 7.0 3.12 0.0 72.8 0.0 4,-1 1.0 14 14.0 PRINCIPAL:2 ENSMUSG00000003402 Prkcsh ENSMUST00000115331 ENSMUSP00000110987 TRANSLATION protein_coding - CCDS80967.1 1 528.0 7.0 3.12 0.0 72.8 0.0 4,-1 0.5985 14 14.0 ALTERNATIVE:2 ENSMUSG00000003402 Prkcsh ENSMUST00000215795 ENSMUSP00000150233 TRANSLATION protein_coding stop - 2 119.0 7.0 2.5 0.0 0.0 0.0 4,-1 0.0026 1 -2.0 MINOR ENSMUSG00000003402 Prkcsh ENSMUST00000214565 - NO_TRANSLATION retained_intron ENSMUSG00000003402 Prkcsh ENSMUST00000003493 ENSMUSP00000003493 TRANSLATION protein_coding - CCDS22918.1 1 521.0 7.0 3.12 0.0 72.8 0.0 4,-1 1.0 14 14.0 PRINCIPAL:2 ENSMUSG00000043719 Col6a6 ENSMUST00000060896 ENSMUSP00000060840 TRANSLATION protein_coding - CCDS23468.1 1 1182.0 18.0 2.27 0.0 747.1 0.0 1,-2 0.1136 18 9.644 MINOR ENSMUSG00000043719 Col6a6 ENSMUST00000166431 ENSMUSP00000125765 TRANSLATION protein_coding - - 5 2265.0 18.0 4.148 1.2 926.9 0.0 1,-2 0.7799 28 15.0 ALTERNATIVE:2 ENSMUSG00000043719 Col6a6 ENSMUST00000098441 ENSMUSP00000096040 TRANSLATION protein_coding - CCDS52906.1 5 2265.0 18.0 4.148 1.2 926.9 0.0 1,-2 1.0 28 15.0 PRINCIPAL:4 ENSMUSG00000093456 Gm20662 ENSMUST00000176356 ENSMUSP00000135269 TRANSLATION nonsense_mediated_decay,RT start - 3 40.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.6309 - -2.0 PRINCIPAL:5 ENSMUSG00000093456 Gm20662 ENSMUST00000176459 ENSMUSP00000135534 TRANSLATION nonsense_mediated_decay,RT start - 3 28.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0218 - -2.0 ALTERNATIVE:2 ENSMUSG00000093456 Gm20662 ENSMUST00000176454 - NO_TRANSLATION retained_intron ENSMUSG00000010607 Pigyl ENSMUST00000148088 ENSMUSP00000116967 TRANSLATION protein_coding - CCDS52742.1 2 71.0 0.0 1.0 27.7 66.7 1.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000010607 Pigyl ENSMUST00000123680 ENSMUSP00000116929 TRANSLATION protein_coding - CCDS52742.1 2 71.0 0.0 1.0 27.7 66.7 1.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032412 Atp1b3 ENSMUST00000034983 ENSMUSP00000034983 TRANSLATION protein_coding - CCDS23414.1 1 278.0 0.0 5.85 15.4 317.6 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000032412 Atp1b3 ENSMUST00000187341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032412 Atp1b3 ENSMUST00000190045 - NO_TRANSLATION retained_intron ENSMUSG00000096316 Faiml ENSMUST00000188555 ENSMUSP00000139801 TRANSLATION protein_coding - CCDS57691.1 5 178.0 0.0 3.5 25.6 279.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000096316 Faiml ENSMUST00000178051 ENSMUSP00000137541 TRANSLATION protein_coding - CCDS57691.1 5 178.0 0.0 3.5 25.6 279.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000070287 Slc35g2 ENSMUST00000189478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070287 Slc35g2 ENSMUST00000093792 ENSMUSP00000091308 TRANSLATION protein_coding - CCDS52898.1 2 412.0 0.0 1.0 31.0 0.0 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000099974 Bcl2a1d ENSMUST00000098486 ENSMUSP00000096087 TRANSLATION protein_coding - CCDS23390.1 1 172.0 0.0 1.8 7.7 87.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000053110 Yap1 ENSMUST00000173227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053110 Yap1 ENSMUST00000174577 ENSMUSP00000133959 TRANSLATION nonsense_mediated_decay - - 5 357.0 0.0 3.4 0.0 76.7 0.0 -4,-6 0.0414 6 -2.0 MINOR ENSMUSG00000053110 Yap1 ENSMUST00000174300 - NO_TRANSLATION retained_intron ENSMUSG00000053110 Yap1 ENSMUST00000172870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053110 Yap1 ENSMUST00000174604 ENSMUSP00000134250 TRANSLATION protein_coding start - 5 397.0 0.0 2.4 0.0 76.7 0.0 -4,-7 0.0239 6 -2.0 MINOR ENSMUSG00000053110 Yap1 ENSMUST00000173264 ENSMUSP00000134237 TRANSLATION nonsense_mediated_decay - - 5 369.0 0.0 3.4 0.0 76.7 0.0 -4,-6 0.0407 7 -2.0 MINOR ENSMUSG00000053110 Yap1 ENSMUST00000065353 ENSMUSP00000069554 TRANSLATION protein_coding - CCDS52718.1 1 488.0 0.0 3.4 0.0 76.7 0.0 -4,-6 0.3085 10 8.0 ALTERNATIVE:2 ENSMUSG00000053110 Yap1 ENSMUST00000174127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053110 Yap1 ENSMUST00000086580 ENSMUSP00000083772 TRANSLATION protein_coding - CCDS40533.1 1 472.0 0.0 3.4 0.0 76.7 0.0 -4,-6 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000053110 Yap1 ENSMUST00000173085 ENSMUSP00000134007 TRANSLATION nonsense_mediated_decay - - 5 353.0 0.0 3.4 0.0 76.7 0.0 -4,-6 0.0439 6 -2.0 MINOR ENSMUSG00000037808 Fam76b ENSMUST00000156680 ENSMUSP00000115751 TRANSLATION nonsense_mediated_decay - - 5 233.0 4.0 3.8 2.2 289.0 0.0 -4,-5 0.0807 4 -2.0 MINOR ENSMUSG00000037808 Fam76b ENSMUST00000059579 ENSMUSP00000062642 TRANSLATION protein_coding - CCDS22819.1 1 339.0 4.0 3.8 20.1 397.2 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000037808 Fam76b ENSMUST00000130106 - NO_TRANSLATION retained_intron ENSMUSG00000037808 Fam76b ENSMUST00000213416 ENSMUSP00000149169 TRANSLATION protein_coding start - 2 74.0 0.0 0.0 0.0 67.3 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000037808 Fam76b ENSMUST00000129861 - NO_TRANSLATION retained_intron ENSMUSG00000018623 Mmp7 ENSMUST00000018767 ENSMUSP00000018767 TRANSLATION protein_coding - CCDS40531.1 1 267.0 27.0 4.6 7.7 227.4 0.0 3,-2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000023259 Slc26a6 ENSMUST00000188557 ENSMUSP00000140849 TRANSLATION protein_coding - - 1 758.0 0.0 11.48 2.3 443.7 11.0 -4,-6 0.6876 6 8.684 ALTERNATIVE:2 ENSMUSG00000023259 Slc26a6 ENSMUST00000193291 - NO_TRANSLATION retained_intron ENSMUSG00000023259 Slc26a6 ENSMUST00000239562 ENSMUSP00000159445 TRANSLATION protein_coding - - - 735.0 0.0 11.48 2.9 443.7 11.0 -4,-5 1.0 6 9.0 PRINCIPAL:2 ENSMUSG00000023259 Slc26a6 ENSMUST00000193874 ENSMUSP00000141409 TRANSLATION nonsense_mediated_decay - - 5 239.0 0.0 3.28 0.0 146.7 7.0 -4,-5 0.0049 1 -2.0 MINOR ENSMUSG00000023259 Slc26a6 ENSMUST00000192559 ENSMUSP00000141632 TRANSLATION nonsense_mediated_decay - - 1 262.0 0.0 3.28 0.0 146.7 7.0 -4,-7 0.0049 1 -2.0 MINOR ENSMUSG00000023259 Slc26a6 ENSMUST00000193463 - NO_TRANSLATION retained_intron ENSMUSG00000023259 Slc26a6 ENSMUST00000193825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023259 Slc26a6 ENSMUST00000195646 - NO_TRANSLATION retained_intron ENSMUSG00000023259 Slc26a6 ENSMUST00000192507 - NO_TRANSLATION retained_intron ENSMUSG00000079644 Gm1110 ENSMUST00000115261 ENSMUSP00000110916 TRANSLATION protein_coding - - 5 635.0 0.0 16.0 1.6 304.3 0.0 -2,-4 0.9037 - 13.0 PRINCIPAL:1 ENSMUSG00000079644 Gm1110 ENSMUST00000217197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079644 Gm1110 ENSMUST00000214461 - NO_TRANSLATION retained_intron ENSMUSG00000079644 Gm1110 ENSMUST00000214847 - NO_TRANSLATION retained_intron ENSMUSG00000096409 Or8b41 ENSMUST00000079804 ENSMUSP00000078733 TRANSLATION protein_coding - CCDS22998.1 - 314.0 0.0 1.0 6.5 163.5 4.0 -4,-7 1.0 - 9.965 PRINCIPAL:4 ENSMUSG00000096409 Or8b41 ENSMUST00000213458 ENSMUSP00000149829 TRANSLATION protein_coding - - 5 309.0 0.0 1.0 9.4 163.5 4.0 -4,-7 0.952 - 11.0 ALTERNATIVE:1 ENSMUSG00000058856 Or8g33 ENSMUST00000073895 ENSMUSP00000073558 TRANSLATION protein_coding - CCDS23045.1 - 314.0 0.0 1.0 4.7 141.9 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000066463 Omt2a ENSMUST00000113376 ENSMUSP00000109003 TRANSLATION protein_coding - CCDS52868.1 3 90.0 0.0 1.85 0.0 0.0 1.0 -4,-7 0.172 - 5.418 ALTERNATIVE:2 ENSMUSG00000066463 Omt2a ENSMUST00000173321 ENSMUSP00000133954 TRANSLATION nonsense_mediated_decay start - 5 25.0 0.0 0.75 0.0 0.0 0.0 -4,-2 0.0305 - -2.0 MINOR ENSMUSG00000066463 Omt2a ENSMUST00000166056 ENSMUSP00000126342 TRANSLATION protein_coding - CCDS52867.1 1 100.0 0.0 2.048 0.0 0.0 1.0 -4,-7 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000066463 Omt2a ENSMUST00000173608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066463 Omt2a ENSMUST00000085308 ENSMUSP00000082416 TRANSLATION protein_coding stop - 5 104.0 0.0 1.668 0.0 0.0 1.0 -4,-7 0.0925 - -2.0 MINOR ENSMUSG00000044037 Als2cl ENSMUST00000155014 ENSMUSP00000115718 TRANSLATION protein_coding - CCDS23579.1 1 952.0 0.0 2.565 5.8 138.5 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000044037 Als2cl ENSMUST00000143416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044037 Als2cl ENSMUST00000141845 - NO_TRANSLATION retained_intron ENSMUSG00000044037 Als2cl ENSMUST00000123389 ENSMUSP00000142853 TRANSLATION protein_coding stop - 5 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000044037 Als2cl ENSMUST00000084926 ENSMUSP00000081989 TRANSLATION protein_coding - CCDS23579.1 1 952.0 0.0 2.565 5.8 138.5 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000044037 Als2cl ENSMUST00000156673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044037 Als2cl ENSMUST00000200613 - NO_TRANSLATION retained_intron ENSMUSG00000044037 Als2cl ENSMUST00000130386 ENSMUSP00000123304 TRANSLATION protein_coding - CCDS23579.1 1 952.0 0.0 2.565 5.8 138.5 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000111692 Gm49373 ENSMUST00000213826 ENSMUSP00000150978 TRANSLATION nonsense_mediated_decay,RT start - 2 88.0 9.0 2.08 0.0 32.7 0.0 -4,-5 0.7366 - -2.0 PRINCIPAL:1 ENSMUSG00000047508 Mbd3l2 ENSMUST00000051008 ENSMUSP00000054515 TRANSLATION protein_coding - CCDS22844.1 1 228.0 0.0 0.2 0.1 160.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047508 Mbd3l2 ENSMUST00000213777 ENSMUSP00000149130 TRANSLATION protein_coding - CCDS22844.1 1 228.0 0.0 0.2 0.1 160.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000070323 Mmp27 ENSMUST00000151853 ENSMUSP00000117469 TRANSLATION protein_coding - - 5 551.0 27.0 6.85 0.0 310.1 0.0 -3,-6 0.0384 - 15.504 MINOR ENSMUSG00000070323 Mmp27 ENSMUST00000120900 ENSMUSP00000113231 TRANSLATION protein_coding - CCDS80952.1 1 525.0 27.0 7.6 0.0 326.7 0.0 -3,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000070323 Mmp27 ENSMUST00000152878 ENSMUSP00000116263 TRANSLATION protein_coding start - 1 470.0 23.0 6.6 0.0 248.5 0.0 -3,-6 0.007 - -2.0 MINOR ENSMUSG00000032446 Eomes ENSMUST00000035020 ENSMUSP00000035020 TRANSLATION protein_coding - CCDS23603.1 1 707.0 0.0 3.75 0.4 582.0 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000032446 Eomes ENSMUST00000111763 ENSMUSP00000107393 TRANSLATION protein_coding - CCDS52960.1 1 688.0 0.0 3.75 0.3 582.0 0.0 -4,-5 0.4262 5 8.0 ALTERNATIVE:2 ENSMUSG00000032446 Eomes ENSMUST00000150633 ENSMUSP00000118079 TRANSLATION protein_coding start - 1 395.0 0.0 3.75 0.0 254.8 0.0 -4,-5 0.0416 - -2.0 MINOR ENSMUSG00000032468 Armc8 ENSMUST00000035043 ENSMUSP00000035043 TRANSLATION protein_coding - CCDS23434.1 1 673.0 0.0 7.659 30.0 23.0 0.0 -4,-6 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000032468 Armc8 ENSMUST00000191370 - NO_TRANSLATION retained_intron ENSMUSG00000032468 Armc8 ENSMUST00000185524 ENSMUSP00000139973 TRANSLATION protein_coding - CCDS81059.1 1 399.0 0.0 3.595 2.2 23.0 0.0 -4,-6 0.2481 10 6.164 MINOR ENSMUSG00000032468 Armc8 ENSMUST00000186049 ENSMUSP00000140426 TRANSLATION protein_coding - - 1 357.0 0.0 3.445 0.0 23.0 0.0 -4,-7 0.0115 8 6.0 MINOR ENSMUSG00000049511 Htr1b ENSMUST00000183482 ENSMUSP00000139389 TRANSLATION protein_coding - CCDS23370.1 3 386.0 0.0 0.8 8.5 265.6 6.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000049511 Htr1b ENSMUST00000051005 ENSMUSP00000050898 TRANSLATION protein_coding - CCDS23370.1 - 386.0 0.0 0.8 8.5 265.6 6.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000095390 Or8g2 ENSMUST00000076802 ENSMUSP00000076080 TRANSLATION protein_coding - CCDS23065.1 - 307.0 0.0 1.0 11.4 172.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095390 Or8g2 ENSMUST00000214904 ENSMUSP00000149063 TRANSLATION protein_coding - CCDS23065.1 5 307.0 0.0 1.0 11.4 172.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070291 Ddx43 ENSMUST00000113367 ENSMUSP00000108994 TRANSLATION protein_coding - CCDS52870.1 5 646.0 19.0 10.0 5.9 288.9 0.0 -4,-1 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000037977 6430571L13Rik ENSMUST00000135520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037977 6430571L13Rik ENSMUST00000042581 ENSMUSP00000047093 TRANSLATION protein_coding - CCDS23489.1 1 164.0 0.0 1.33 11.6 0.0 0.0 -4,-6 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000035047 Kri1 ENSMUST00000184615 - NO_TRANSLATION retained_intron ENSMUSG00000035047 Kri1 ENSMUST00000183665 - NO_TRANSLATION retained_intron ENSMUSG00000035047 Kri1 ENSMUST00000183912 - NO_TRANSLATION retained_intron ENSMUSG00000035047 Kri1 ENSMUST00000184410 - NO_TRANSLATION retained_intron ENSMUSG00000035047 Kri1 ENSMUST00000183503 - NO_TRANSLATION retained_intron ENSMUSG00000035047 Kri1 ENSMUST00000038671 ENSMUSP00000039688 TRANSLATION protein_coding - CCDS72201.1 1 705.0 0.0 0.0 0.4 193.5 0.0 -4,-2 1.0 8 2.0 PRINCIPAL:2 ENSMUSG00000035047 Kri1 ENSMUST00000184326 ENSMUSP00000139184 TRANSLATION protein_coding - - 5 587.0 0.0 0.0 0.1 193.5 0.0 -4,-5 0.0814 7 2.0 ALTERNATIVE:2 ENSMUSG00000107504 Gm35549 ENSMUST00000203656 ENSMUSP00000144807 TRANSLATION protein_coding - - 5 141.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5812 - 0.0 PRINCIPAL:1 ENSMUSG00000107504 Gm35549 ENSMUST00000204619 ENSMUSP00000145500 TRANSLATION protein_coding - - 5 141.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5812 - 0.0 PRINCIPAL:1 ENSMUSG00000107504 Gm35549 ENSMUST00000203176 ENSMUSP00000145415 TRANSLATION protein_coding - - 5 141.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5812 - 0.0 PRINCIPAL:1 ENSMUSG00000107504 Gm35549 ENSMUST00000207349 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058173 Smco4 ENSMUST00000178999 ENSMUSP00000136432 TRANSLATION protein_coding - CCDS22838.1 1 59.0 0.0 0.0 13.6 100.3 1.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000058173 Smco4 ENSMUST00000215907 ENSMUSP00000150121 TRANSLATION protein_coding - CCDS22838.1 1 59.0 0.0 0.0 13.6 100.3 1.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000058173 Smco4 ENSMUST00000045620 ENSMUSP00000044228 TRANSLATION protein_coding - CCDS22838.1 1 59.0 0.0 0.0 13.6 100.3 1.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000032177 Pde4a ENSMUST00000115458 ENSMUSP00000111118 TRANSLATION protein_coding - CCDS80964.1 1 787.0 6.0 7.2375 0.0 316.7 0.0 -3,-1 0.2388 13 16.872 MINOR ENSMUSG00000032177 Pde4a ENSMUST00000003395 ENSMUSP00000003395 TRANSLATION protein_coding - CCDS22896.1 1 610.0 6.0 7.8 0.0 316.7 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000032177 Pde4a ENSMUST00000140440 - NO_TRANSLATION retained_intron ENSMUSG00000032177 Pde4a ENSMUST00000131769 - NO_TRANSLATION retained_intron ENSMUSG00000032177 Pde4a ENSMUST00000039413 ENSMUSP00000037025 TRANSLATION protein_coding - CCDS22895.1 1 844.0 6.0 7.2375 0.4 316.7 0.0 -4,-6 0.2013 13 16.872 MINOR ENSMUSG00000039285 Azi2 ENSMUST00000044454 ENSMUSP00000044350 TRANSLATION protein_coding - CCDS40799.1 1 405.0 0.0 2.0 0.4 75.5 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000039285 Azi2 ENSMUST00000135251 ENSMUSP00000116971 TRANSLATION protein_coding stop - 2 178.0 0.0 1.0 0.0 75.5 0.0 -4,-5 0.0158 5 -2.0 MINOR ENSMUSG00000039285 Azi2 ENSMUST00000134433 ENSMUSP00000114980 TRANSLATION protein_coding - CCDS52959.1 1 283.0 0.0 2.0 0.0 61.2 0.0 -4,-5 0.1534 5 10.866 MINOR ENSMUSG00000039285 Azi2 ENSMUST00000143024 - NO_TRANSLATION retained_intron ENSMUSG00000039285 Azi2 ENSMUST00000130735 ENSMUSP00000114634 TRANSLATION protein_coding start - 3 199.0 0.0 1.0 0.0 61.7 0.0 -4,-5 0.0044 5 -2.0 MINOR ENSMUSG00000039285 Azi2 ENSMUST00000133814 - NO_TRANSLATION retained_intron ENSMUSG00000039285 Azi2 ENSMUST00000127189 - NO_TRANSLATION retained_intron ENSMUSG00000039285 Azi2 ENSMUST00000133580 ENSMUSP00000118765 TRANSLATION protein_coding - CCDS40799.1 1 405.0 0.0 2.0 0.4 75.5 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000039285 Azi2 ENSMUST00000154583 ENSMUSP00000122063 TRANSLATION nonsense_mediated_decay - - 1 114.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039285 Azi2 ENSMUST00000123690 ENSMUSP00000121245 TRANSLATION protein_coding start - 5 67.0 0.0 1.0 0.0 62.4 0.0 -4,-5 0.0004 1 -2.0 MINOR ENSMUSG00000038664 Herc1 ENSMUST00000135600 - NO_TRANSLATION retained_intron ENSMUSG00000038664 Herc1 ENSMUST00000144280 - NO_TRANSLATION retained_intron ENSMUSG00000038664 Herc1 ENSMUST00000042824 ENSMUSP00000044801 TRANSLATION protein_coding - CCDS52840.1 5 4859.0 3.0 20.15 10.5 727.8 0.0 -4,-5 1.0 76 18.0 PRINCIPAL:1 ENSMUSG00000038664 Herc1 ENSMUST00000130854 - NO_TRANSLATION retained_intron ENSMUSG00000038664 Herc1 ENSMUST00000140487 - NO_TRANSLATION retained_intron ENSMUSG00000038664 Herc1 ENSMUST00000135159 ENSMUSP00000119991 TRANSLATION protein_coding start/stop - 1 569.0 3.0 0.0 0.0 0.0 0.0 -4,-7 0.0036 7 -2.0 MINOR ENSMUSG00000038664 Herc1 ENSMUST00000124969 - NO_TRANSLATION retained_intron ENSMUSG00000025888 Casp1 ENSMUST00000238546 - NO_TRANSLATION retained_intron ENSMUSG00000025888 Casp1 ENSMUST00000027015 ENSMUSP00000027015 TRANSLATION protein_coding - CCDS22798.1 1 402.0 4.0 10.6 2.0 260.3 0.0 -4,-7 1.0 18 17.0 PRINCIPAL:1 ENSMUSG00000025888 Casp1 ENSMUST00000238505 ENSMUSP00000158737 TRANSLATION protein_coding stop - - 156.0 0.0 3.1 0.0 39.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000025888 Casp1 ENSMUST00000238348 - NO_TRANSLATION retained_intron ENSMUSG00000025888 Casp1 ENSMUST00000238730 ENSMUSP00000158725 TRANSLATION nonsense_mediated_decay start - - 103.0 0.0 2.25 0.0 35.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000054087 Fbxw28 ENSMUST00000112039 ENSMUSP00000107670 TRANSLATION protein_coding - CCDS52933.1 1 466.0 0.0 1.4 0.0 43.1 0.0 -4,-7 0.4405 - 8.0 ALTERNATIVE:2 ENSMUSG00000054087 Fbxw28 ENSMUST00000196351 ENSMUSP00000143357 TRANSLATION protein_coding stop - 3 214.0 0.0 1.2 0.0 43.1 0.0 -4,-7 0.0328 - -2.0 MINOR ENSMUSG00000054087 Fbxw28 ENSMUST00000200156 ENSMUSP00000143361 TRANSLATION protein_coding - - 1 413.0 0.0 1.4 0.0 43.1 0.0 -4,-7 0.7817 - 8.0 PRINCIPAL:2 ENSMUSG00000054087 Fbxw28 ENSMUST00000112040 ENSMUSP00000107671 TRANSLATION protein_coding - CCDS52932.1 1 453.0 0.0 1.4 0.0 43.1 0.0 -4,-7 0.436 - 8.0 ALTERNATIVE:2 ENSMUSG00000043987 Cep164 ENSMUST00000214971 - NO_TRANSLATION retained_intron ENSMUSG00000043987 Cep164 ENSMUST00000152629 - NO_TRANSLATION retained_intron ENSMUSG00000043987 Cep164 ENSMUST00000217022 - NO_TRANSLATION retained_intron ENSMUSG00000043987 Cep164 ENSMUST00000214868 ENSMUSP00000149980 TRANSLATION protein_coding stop - 5 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0498 - -2.0 MINOR ENSMUSG00000043987 Cep164 ENSMUST00000216284 ENSMUSP00000150742 TRANSLATION protein_coding start - 1 1172.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2094 10 -2.0 MINOR ENSMUSG00000043987 Cep164 ENSMUST00000117194 ENSMUSP00000114053 TRANSLATION protein_coding - CCDS52783.1 5 1333.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.452 10 0.0 ALTERNATIVE:2 ENSMUSG00000043987 Cep164 ENSMUST00000217554 ENSMUSP00000149347 TRANSLATION nonsense_mediated_decay start - 3 79.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0522 - -2.0 MINOR ENSMUSG00000043987 Cep164 ENSMUST00000132430 ENSMUSP00000117344 TRANSLATION protein_coding start/stop - 5 627.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0703 4 -2.0 MINOR ENSMUSG00000043987 Cep164 ENSMUST00000213154 ENSMUSP00000149815 TRANSLATION protein_coding - - 5 2034.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.7416 13 0.0 PRINCIPAL:2 ENSMUSG00000032387 Rbpms2 ENSMUST00000216382 ENSMUSP00000151192 TRANSLATION protein_coding start/stop - 5 191.0 0.0 3.0 0.0 41.0 0.0 -4,-7 0.0134 3 -2.0 MINOR ENSMUSG00000032387 Rbpms2 ENSMUST00000216769 - NO_TRANSLATION retained_intron ENSMUSG00000032387 Rbpms2 ENSMUST00000216342 ENSMUSP00000149535 TRANSLATION protein_coding start/stop - 3 198.0 0.0 2.25 0.0 0.0 0.0 -4,-2 0.0089 2 -2.0 MINOR ENSMUSG00000032387 Rbpms2 ENSMUST00000169003 ENSMUSP00000131076 TRANSLATION protein_coding - - 1 168.0 0.0 3.0 0.9 41.0 0.0 -4,-5 0.1687 3 12.0 MINOR ENSMUSG00000032387 Rbpms2 ENSMUST00000055844 ENSMUSP00000057600 TRANSLATION protein_coding - CCDS23296.1 1 206.0 0.0 3.0 11.0 41.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000032387 Rbpms2 ENSMUST00000213927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032500 Dclk3 ENSMUST00000111879 ENSMUSP00000107510 TRANSLATION protein_coding - CCDS23585.2 1 790.0 18.0 3.2 0.0 322.8 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039585 Myo9a ENSMUST00000151167 - NO_TRANSLATION retained_intron ENSMUSG00000039585 Myo9a ENSMUST00000135298 ENSMUSP00000117432 TRANSLATION protein_coding - - 5 2613.0 17.0 15.5 0.0 1025.8 0.0 -4,-6 1.0 32 14.0 PRINCIPAL:4 ENSMUSG00000039585 Myo9a ENSMUST00000126631 - NO_TRANSLATION retained_intron ENSMUSG00000039585 Myo9a ENSMUST00000128341 ENSMUSP00000119401 TRANSLATION protein_coding - - 5 2542.0 17.0 15.5 0.0 1025.8 0.0 -4,-6 0.5959 33 14.0 ALTERNATIVE:2 ENSMUSG00000039585 Myo9a ENSMUST00000136740 ENSMUSP00000122852 TRANSLATION protein_coding - CCDS52820.1 5 2631.0 17.0 15.5 0.0 1025.8 0.0 -4,-6 0.8007 32 14.0 ALTERNATIVE:2 ENSMUSG00000039585 Myo9a ENSMUST00000127933 - NO_TRANSLATION retained_intron ENSMUSG00000039585 Myo9a ENSMUST00000130497 - NO_TRANSLATION retained_intron ENSMUSG00000039585 Myo9a ENSMUST00000147364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000092541 Gm20537 ENSMUST00000173131 ENSMUSP00000134122 TRANSLATION nonsense_mediated_decay,RT start - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5673 - -2.0 PRINCIPAL:5 ENSMUSG00000092541 Gm20537 ENSMUST00000154586 ENSMUSP00000133964 TRANSLATION nonsense_mediated_decay,RT start - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.028 - -2.0 ALTERNATIVE:2 ENSMUSG00000032002 Dcun1d5 ENSMUST00000216770 - NO_TRANSLATION retained_intron ENSMUSG00000032002 Dcun1d5 ENSMUST00000034499 ENSMUSP00000034499 TRANSLATION protein_coding - - 1 255.0 0.0 4.8 0.0 42.2 0.0 -4,-7 0.0004 6 5.328 MINOR ENSMUSG00000032002 Dcun1d5 ENSMUST00000215818 ENSMUSP00000150049 TRANSLATION protein_coding start - 3 147.0 0.0 3.0 0.0 79.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000032002 Dcun1d5 ENSMUST00000215683 ENSMUSP00000150564 TRANSLATION protein_coding - CCDS40529.1 1 237.0 0.0 6.25 29.7 105.1 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000063176 Or8g35 ENSMUST00000219910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063176 Or8g35 ENSMUST00000073946 ENSMUSP00000073602 TRANSLATION protein_coding - CCDS23047.1 - 314.0 0.0 1.0 5.4 157.8 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063176 Or8g35 ENSMUST00000220176 ENSMUSP00000151246 TRANSLATION protein_coding - CCDS23047.1 5 314.0 0.0 1.0 5.4 157.8 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058398 Prss43 ENSMUST00000077549 ENSMUSP00000076752 TRANSLATION protein_coding - CCDS23574.1 1 382.0 3.0 2.6 0.0 186.0 0.0 0,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000032081 Apoc3 ENSMUST00000214729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032081 Apoc3 ENSMUST00000118649 ENSMUSP00000113058 TRANSLATION protein_coding - CCDS23141.1 2 99.0 0.0 2.264 3.9 119.0 0.0 4,-1 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000032081 Apoc3 ENSMUST00000034586 ENSMUSP00000034586 TRANSLATION protein_coding - CCDS23141.1 1 99.0 0.0 2.264 3.9 119.0 0.0 4,-1 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000032081 Apoc3 ENSMUST00000121916 ENSMUSP00000113126 TRANSLATION protein_coding - CCDS80989.1 2 137.0 0.0 2.264 0.0 119.0 0.0 -2,0 0.1779 2 8.0 ALTERNATIVE:2 ENSMUSG00000032081 Apoc3 ENSMUST00000145672 ENSMUSP00000115025 TRANSLATION protein_coding stop - 5 53.0 0.0 1.0 0.0 44.2 0.0 4,-1 0.0017 - -2.0 MINOR ENSMUSG00000095839 Or8g52 ENSMUST00000215164 ENSMUSP00000150401 TRANSLATION protein_coding - CCDS23058.1 5 312.0 0.0 1.0 10.7 160.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095839 Or8g52 ENSMUST00000069342 ENSMUSP00000069696 TRANSLATION protein_coding - CCDS23058.1 - 312.0 0.0 1.0 10.7 160.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095839 Or8g52 ENSMUST00000213335 ENSMUSP00000149456 TRANSLATION protein_coding - CCDS23058.1 5 312.0 0.0 1.0 10.7 160.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032342 Mto1 ENSMUST00000136478 - NO_TRANSLATION retained_intron ENSMUSG00000032342 Mto1 ENSMUST00000150850 - NO_TRANSLATION retained_intron ENSMUSG00000032342 Mto1 ENSMUST00000133002 ENSMUSP00000123414 TRANSLATION protein_coding start - 5 89.0 0.0 1.28 0.0 71.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032342 Mto1 ENSMUST00000148238 ENSMUSP00000121424 TRANSLATION nonsense_mediated_decay - - 5 198.0 10.0 1.8 0.0 183.9 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000032342 Mto1 ENSMUST00000157051 - NO_TRANSLATION retained_intron ENSMUSG00000032342 Mto1 ENSMUST00000034896 ENSMUSP00000034896 TRANSLATION protein_coding - CCDS23363.1 1 669.0 15.0 8.022 1.1 716.6 0.0 -4,0 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000031918 Mtmr2 ENSMUST00000146901 - NO_TRANSLATION retained_intron ENSMUSG00000031918 Mtmr2 ENSMUST00000034396 ENSMUSP00000034396 TRANSLATION protein_coding - CCDS22818.3 1 643.0 7.0 12.5 23.4 588.0 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:2 ENSMUSG00000031918 Mtmr2 ENSMUST00000143002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031918 Mtmr2 ENSMUST00000156801 ENSMUSP00000117332 TRANSLATION protein_coding - - 5 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000031918 Mtmr2 ENSMUST00000134674 ENSMUSP00000121933 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031918 Mtmr2 ENSMUST00000134530 ENSMUSP00000121223 TRANSLATION protein_coding start - 2 67.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031918 Mtmr2 ENSMUST00000155679 ENSMUSP00000115906 TRANSLATION protein_coding - - 5 571.0 7.0 12.5 20.9 587.7 0.0 -4,-5 0.7431 15 17.552 ALTERNATIVE:1 ENSMUSG00000031918 Mtmr2 ENSMUST00000152532 ENSMUSP00000114509 TRANSLATION protein_coding stop - 5 105.0 0.0 3.25 0.0 68.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000031918 Mtmr2 ENSMUST00000136735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032527 Pccb ENSMUST00000189498 ENSMUSP00000140354 TRANSLATION protein_coding stop - 5 132.0 4.0 2.63 0.0 38.5 0.0 -2,1 0.0 4 -2.0 MINOR ENSMUSG00000032527 Pccb ENSMUST00000149322 ENSMUSP00000118006 TRANSLATION protein_coding - CCDS81063.1 1 504.0 22.0 12.88 0.0 447.4 0.0 -2,1 0.0242 27 6.666 MINOR ENSMUSG00000032527 Pccb ENSMUST00000142676 ENSMUSP00000123421 TRANSLATION protein_coding stop - 5 256.0 20.0 6.13 0.0 256.4 0.0 -2,1 0.0007 10 -2.0 MINOR ENSMUSG00000032527 Pccb ENSMUST00000149998 - NO_TRANSLATION retained_intron ENSMUSG00000032527 Pccb ENSMUST00000035116 ENSMUSP00000035116 TRANSLATION protein_coding - CCDS23442.1 1 541.0 27.0 13.88 4.8 649.8 0.0 -2,1 1.0 28 20.0 PRINCIPAL:1 ENSMUSG00000032527 Pccb ENSMUST00000145091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047880 Cxcr5 ENSMUST00000215661 ENSMUSP00000149400 TRANSLATION protein_coding stop - 1 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047880 Cxcr5 ENSMUST00000062215 ENSMUSP00000050444 TRANSLATION protein_coding - CCDS23115.1 1 374.0 0.0 0.8 8.5 173.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047880 Cxcr5 ENSMUST00000213357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047880 Cxcr5 ENSMUST00000179828 ENSMUSP00000137518 TRANSLATION protein_coding - CCDS23115.1 5 374.0 0.0 0.8 8.5 173.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047880 Cxcr5 ENSMUST00000215293 ENSMUSP00000149508 TRANSLATION protein_coding - CCDS23115.1 1 374.0 0.0 0.8 8.5 173.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000010048 Ifrd2 ENSMUST00000193153 - NO_TRANSLATION retained_intron ENSMUSG00000010048 Ifrd2 ENSMUST00000192888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010048 Ifrd2 ENSMUST00000195746 ENSMUSP00000142217 TRANSLATION protein_coding start - 5 149.0 0.0 3.75 0.0 135.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000010048 Ifrd2 ENSMUST00000195725 ENSMUSP00000141718 TRANSLATION nonsense_mediated_decay - - 3 147.0 0.0 1.45 0.0 78.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000010048 Ifrd2 ENSMUST00000010192 ENSMUSP00000010192 TRANSLATION protein_coding - CCDS23500.1 1 441.0 0.0 8.38 8.8 410.3 0.0 -4,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000010048 Ifrd2 ENSMUST00000193140 ENSMUSP00000141351 TRANSLATION nonsense_mediated_decay start - 3 48.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010048 Ifrd2 ENSMUST00000194932 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000161182 ENSMUSP00000124020 TRANSLATION protein_coding - - 5 940.0 2.0 13.8654 0.7 584.7 0.0 -4,-7 0.0391 25 6.038 MINOR ENSMUSG00000032295 Man2c1 ENSMUST00000159402 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000159496 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000160584 ENSMUSP00000123840 TRANSLATION nonsense_mediated_decay - - 5 208.0 0.0 2.1464 0.0 0.0 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000032295 Man2c1 ENSMUST00000159711 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000159101 ENSMUSP00000124304 TRANSLATION nonsense_mediated_decay start - 3 190.0 1.0 2.465 0.0 99.4 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000032295 Man2c1 ENSMUST00000160426 ENSMUSP00000124005 TRANSLATION nonsense_mediated_decay start - 5 138.0 1.0 0.7 0.0 33.2 0.0 -3,-6 0.0 2 -2.0 MINOR ENSMUSG00000032295 Man2c1 ENSMUST00000034836 ENSMUSP00000034836 TRANSLATION protein_coding - - 5 1037.0 4.0 15.5954 3.7 638.6 0.0 -4,-7 0.7416 26 13.0 ALTERNATIVE:2 ENSMUSG00000032295 Man2c1 ENSMUST00000161338 ENSMUSP00000124378 TRANSLATION nonsense_mediated_decay start - 3 20.0 1.0 0.5 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000032295 Man2c1 ENSMUST00000160147 ENSMUSP00000125478 TRANSLATION protein_coding - CCDS40646.1 1 1039.0 4.0 15.5954 3.7 656.1 0.0 -4,-7 1.0 26 13.0 PRINCIPAL:2 ENSMUSG00000032295 Man2c1 ENSMUST00000161663 ENSMUSP00000124124 TRANSLATION protein_coding stop - 1 866.0 4.0 10.9554 0.0 436.4 0.0 -4,-7 0.0089 21 -2.0 MINOR ENSMUSG00000032295 Man2c1 ENSMUST00000159130 ENSMUSP00000125549 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 0.53 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000032295 Man2c1 ENSMUST00000162915 ENSMUSP00000125186 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 0.2 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000032295 Man2c1 ENSMUST00000160122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032295 Man2c1 ENSMUST00000159954 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000160042 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000161696 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000159843 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000162340 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000160280 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000162634 - NO_TRANSLATION retained_intron ENSMUSG00000032295 Man2c1 ENSMUST00000161393 ENSMUSP00000125277 TRANSLATION nonsense_mediated_decay - - 5 89.0 0.0 0.2 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000032295 Man2c1 ENSMUST00000161875 - NO_TRANSLATION retained_intron ENSMUSG00000025650 Col7a1 ENSMUST00000112070 ENSMUSP00000107701 TRANSLATION protein_coding - CCDS40770.1 5 2944.0 5.0 23.1355 0.4 962.2 0.0 2,-1 1.0 32 17.0 PRINCIPAL:1 ENSMUSG00000025650 Col7a1 ENSMUST00000149142 - NO_TRANSLATION retained_intron ENSMUSG00000025650 Col7a1 ENSMUST00000026740 ENSMUSP00000026740 TRANSLATION protein_coding - CCDS40770.1 1 2944.0 5.0 23.1355 0.4 962.2 0.0 2,-1 1.0 32 17.0 PRINCIPAL:1 ENSMUSG00000025650 Col7a1 ENSMUST00000127905 - NO_TRANSLATION retained_intron ENSMUSG00000025650 Col7a1 ENSMUST00000192424 - NO_TRANSLATION retained_intron ENSMUSG00000025650 Col7a1 ENSMUST00000126780 - NO_TRANSLATION retained_intron ENSMUSG00000025650 Col7a1 ENSMUST00000198997 - NO_TRANSLATION retained_intron ENSMUSG00000025650 Col7a1 ENSMUST00000138588 - NO_TRANSLATION retained_intron ENSMUSG00000102037 Bcl2a1a ENSMUST00000098485 ENSMUSP00000096086 TRANSLATION protein_coding - CCDS23391.1 1 172.0 0.0 1.8 7.7 87.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047898 Ccr4 ENSMUST00000054414 ENSMUSP00000062677 TRANSLATION protein_coding - CCDS23594.1 1 360.0 0.0 1.25 11.0 163.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047898 Ccr4 ENSMUST00000215425 ENSMUSP00000150002 TRANSLATION protein_coding - CCDS23594.1 1 360.0 0.0 1.25 11.0 163.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047898 Ccr4 ENSMUST00000215959 ENSMUSP00000150441 TRANSLATION protein_coding stop - 3 32.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032563 Mrpl3 ENSMUST00000214459 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032563 Mrpl3 ENSMUST00000215577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032563 Mrpl3 ENSMUST00000214036 ENSMUSP00000150592 TRANSLATION protein_coding stop - 5 137.0 0.0 3.58 0.0 41.5 0.0 -2,1 0.0 3 -2.0 MINOR ENSMUSG00000032563 Mrpl3 ENSMUST00000149243 ENSMUSP00000117547 TRANSLATION protein_coding - - 1 304.0 0.0 8.49 0.0 170.5 0.0 -2,2 0.0022 4 8.7 MINOR ENSMUSG00000032563 Mrpl3 ENSMUST00000131655 ENSMUSP00000120313 TRANSLATION nonsense_mediated_decay - - 5 156.0 0.0 3.91 0.0 49.1 0.0 -2,2 0.0 3 -2.0 MINOR ENSMUSG00000032563 Mrpl3 ENSMUST00000139022 - NO_TRANSLATION retained_intron ENSMUSG00000032563 Mrpl3 ENSMUST00000035177 ENSMUSP00000035177 TRANSLATION protein_coding - CCDS23462.1 1 348.0 0.0 9.16 9.2 203.2 0.0 -2,2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000032563 Mrpl3 ENSMUST00000142424 ENSMUSP00000120828 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.0 0.0 0.0 0.0 -2,0 0.0004 - -2.0 MINOR ENSMUSG00000032563 Mrpl3 ENSMUST00000190492 ENSMUSP00000140346 TRANSLATION nonsense_mediated_decay - - 3 71.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000032327 Stra6 ENSMUST00000128021 ENSMUSP00000117832 TRANSLATION protein_coding stop - 3 86.0 0.0 1.2 0.0 31.5 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032327 Stra6 ENSMUST00000170397 ENSMUSP00000130232 TRANSLATION protein_coding - CCDS23236.1 5 670.0 0.0 10.1095 4.3 816.0 11.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000032327 Stra6 ENSMUST00000085677 ENSMUSP00000082820 TRANSLATION protein_coding - CCDS23236.1 1 670.0 0.0 10.1095 4.3 816.0 11.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000032327 Stra6 ENSMUST00000136154 ENSMUSP00000119062 TRANSLATION protein_coding stop - 5 199.0 0.0 3.2095 0.0 187.4 6.0 -4,-6 0.0039 - -2.0 MINOR ENSMUSG00000032327 Stra6 ENSMUST00000150820 ENSMUSP00000122373 TRANSLATION protein_coding stop - 3 167.0 0.0 2.2615 0.0 134.2 5.0 -4,-6 0.0023 - -2.0 MINOR ENSMUSG00000032327 Stra6 ENSMUST00000034880 ENSMUSP00000034880 TRANSLATION protein_coding - CCDS23236.1 1 670.0 0.0 10.1095 4.3 816.0 11.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000032327 Stra6 ENSMUST00000128378 ENSMUSP00000115511 TRANSLATION protein_coding stop - 3 164.0 0.0 2.2615 0.0 131.0 5.0 -4,-6 0.0023 - -2.0 MINOR ENSMUSG00000032327 Stra6 ENSMUST00000145886 - NO_TRANSLATION retained_intron ENSMUSG00000032327 Stra6 ENSMUST00000136338 ENSMUSP00000115314 TRANSLATION protein_coding stop - 3 99.0 0.0 1.2615 0.0 49.4 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032327 Stra6 ENSMUST00000133287 ENSMUSP00000114346 TRANSLATION protein_coding stop - 3 139.0 0.0 1.7615 0.0 91.9 5.0 -4,-6 0.0023 - -2.0 MINOR ENSMUSG00000032327 Stra6 ENSMUST00000167479 ENSMUSP00000128417 TRANSLATION protein_coding - CCDS23236.1 5 670.0 0.0 10.1095 4.3 816.0 11.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000032327 Stra6 ENSMUST00000134450 ENSMUSP00000118242 TRANSLATION protein_coding stop - 5 63.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032327 Stra6 ENSMUST00000147134 ENSMUSP00000115315 TRANSLATION protein_coding stop - 3 162.0 0.0 2.2615 0.0 124.0 5.0 -4,-6 0.0023 - -2.0 MINOR ENSMUSG00000032327 Stra6 ENSMUST00000134955 ENSMUSP00000117280 TRANSLATION protein_coding stop - 3 190.0 0.0 3.0115 0.0 170.9 6.0 -4,-6 0.0039 - -2.0 MINOR ENSMUSG00000094353 Or8g50 ENSMUST00000217257 ENSMUSP00000150024 TRANSLATION protein_coding - CCDS52773.1 5 312.0 0.0 1.0 11.4 167.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094353 Or8g50 ENSMUST00000078557 ENSMUSP00000077635 TRANSLATION protein_coding - CCDS52773.1 - 312.0 0.0 1.0 11.4 167.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035498 Cdcp1 ENSMUST00000039229 ENSMUSP00000042057 TRANSLATION protein_coding - CCDS23657.1 1 833.0 0.0 0.0 6.4 0.0 0.0 0,-3 1.0 16 2.0 PRINCIPAL:1 ENSMUSG00000035498 Cdcp1 ENSMUST00000140915 - NO_TRANSLATION retained_intron ENSMUSG00000035498 Cdcp1 ENSMUST00000148158 - NO_TRANSLATION retained_intron ENSMUSG00000094985 Topaz1 ENSMUST00000178679 ENSMUSP00000136304 TRANSLATION protein_coding - CCDS57718.1 1 1653.0 4.0 0.0 0.0 509.8 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000094985 Topaz1 ENSMUST00000213519 - NO_TRANSLATION retained_intron ENSMUSG00000032496 Ltf ENSMUST00000198152 ENSMUSP00000143342 TRANSLATION nonsense_mediated_decay start - 5 19.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032496 Ltf ENSMUST00000198233 - NO_TRANSLATION retained_intron ENSMUSG00000032496 Ltf ENSMUST00000198884 ENSMUSP00000142432 TRANSLATION protein_coding - - 5 95.0 2.0 2.25 0.0 125.0 0.0 -4,-7 0.0 5 0.0 MINOR ENSMUSG00000032496 Ltf ENSMUST00000035077 ENSMUSP00000035077 TRANSLATION protein_coding - CCDS23581.1 1 707.0 21.0 17.645 3.7 861.9 0.0 3,-2 1.0 43 19.0 PRINCIPAL:1 ENSMUSG00000032496 Ltf ENSMUST00000199815 ENSMUSP00000142403 TRANSLATION nonsense_mediated_decay start - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0041 - -2.0 MINOR ENSMUSG00000032496 Ltf ENSMUST00000199313 ENSMUSP00000142739 TRANSLATION protein_coding start - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032496 Ltf ENSMUST00000196209 ENSMUSP00000143731 TRANSLATION protein_coding stop - 3 78.0 1.0 1.995 0.0 26.3 0.0 3,-2 0.0 2 -2.0 MINOR ENSMUSG00000032496 Ltf ENSMUST00000197893 - NO_TRANSLATION retained_intron ENSMUSG00000032496 Ltf ENSMUST00000200459 - NO_TRANSLATION retained_intron ENSMUSG00000032496 Ltf ENSMUST00000196777 ENSMUSP00000143629 TRANSLATION protein_coding stop - 3 122.0 7.0 3.75 0.0 205.0 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000032496 Ltf ENSMUST00000197575 ENSMUSP00000142691 TRANSLATION protein_coding start - 3 127.0 4.0 2.5 0.0 79.2 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000032496 Ltf ENSMUST00000196122 ENSMUSP00000143234 TRANSLATION protein_coding stop - 5 184.0 9.0 4.0 0.0 262.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000040729 Cep126 ENSMUST00000037397 ENSMUSP00000042904 TRANSLATION protein_coding - CCDS40534.1 1 1103.0 0.0 0.73 0.0 1354.0 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000040729 Cep126 ENSMUST00000214150 - NO_TRANSLATION retained_intron ENSMUSG00000040729 Cep126 ENSMUST00000238782 ENSMUSP00000158638 TRANSLATION nonsense_mediated_decay - - - 544.0 0.0 0.73 0.0 126.3 0.0 -4,-7 0.03 - -2.0 MINOR ENSMUSG00000040729 Cep126 ENSMUST00000217241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094254 Or8g54 ENSMUST00000213266 ENSMUSP00000149551 TRANSLATION protein_coding - CCDS23061.1 2 311.0 0.0 1.0 11.4 170.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094254 Or8g54 ENSMUST00000074566 ENSMUSP00000074151 TRANSLATION protein_coding - CCDS23061.1 - 311.0 0.0 1.0 11.4 170.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094461 Or8b36 ENSMUST00000072974 ENSMUSP00000072741 TRANSLATION protein_coding - CCDS22993.1 - 309.0 0.0 1.0 9.4 163.9 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049864 Or8c10 ENSMUST00000216168 ENSMUSP00000150432 TRANSLATION protein_coding - - 5 321.0 0.0 1.0 0.0 156.1 5.0 -4,-6 0.8129 - 8.0 PRINCIPAL:4 ENSMUSG00000049864 Or8c10 ENSMUST00000052085 ENSMUSP00000051631 TRANSLATION protein_coding - CCDS57670.1 - 331.0 0.0 1.0 0.0 156.1 5.0 -4,-7 0.6074 - 8.0 ALTERNATIVE:2 ENSMUSG00000095654 Plscr5 ENSMUST00000179751 ENSMUSP00000136181 TRANSLATION protein_coding - CCDS57688.1 5 274.0 0.0 0.0 6.6 257.0 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000049723 Mmp12 ENSMUST00000127722 ENSMUSP00000120225 TRANSLATION nonsense_mediated_decay - - 1 64.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0034 - -2.0 MINOR ENSMUSG00000049723 Mmp12 ENSMUST00000148005 - NO_TRANSLATION retained_intron ENSMUSG00000049723 Mmp12 ENSMUST00000065079 ENSMUSP00000065291 TRANSLATION protein_coding - - 1 339.0 31.0 5.13 0.0 274.5 0.0 2,-3 0.0025 - 3.336 MINOR ENSMUSG00000049723 Mmp12 ENSMUST00000120655 ENSMUSP00000114129 TRANSLATION protein_coding - CCDS85639.1 1 403.0 35.0 9.5 0.0 386.2 0.0 -4,-5 0.1008 - 14.424 MINOR ENSMUSG00000049723 Mmp12 ENSMUST00000138220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049723 Mmp12 ENSMUST00000005950 ENSMUSP00000005950 TRANSLATION protein_coding - CCDS22804.1 1 473.0 35.0 10.13 0.0 424.8 0.0 2,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000049723 Mmp12 ENSMUST00000150167 ENSMUSP00000116080 TRANSLATION protein_coding stop - 5 72.0 3.0 1.75 0.0 31.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051705 Senp8 ENSMUST00000163586 ENSMUSP00000129441 TRANSLATION protein_coding - CCDS23254.1 1 221.0 5.0 2.0 3.3 46.1 0.0 -4,-5 1.0 4 11.712 PRINCIPAL:2 ENSMUSG00000051705 Senp8 ENSMUST00000177963 ENSMUSP00000137228 TRANSLATION protein_coding - CCDS23254.1 1 221.0 5.0 2.0 3.3 46.1 0.0 -4,-5 1.0 4 11.712 PRINCIPAL:2 ENSMUSG00000051705 Senp8 ENSMUST00000213257 ENSMUSP00000150192 TRANSLATION protein_coding stop - 2 190.0 5.0 1.0 0.0 45.2 0.0 -4,-5 0.0181 2 -2.0 MINOR ENSMUSG00000051705 Senp8 ENSMUST00000051039 ENSMUSP00000054509 TRANSLATION protein_coding - CCDS23254.1 1 221.0 5.0 2.0 3.3 46.1 0.0 -4,-5 1.0 4 11.712 PRINCIPAL:2 ENSMUSG00000051705 Senp8 ENSMUST00000217093 ENSMUSP00000150601 TRANSLATION protein_coding - CCDS23254.1 1 221.0 5.0 2.0 3.3 46.1 0.0 -4,-5 1.0 4 11.712 PRINCIPAL:2 ENSMUSG00000051705 Senp8 ENSMUST00000216045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051705 Senp8 ENSMUST00000216329 ENSMUSP00000149463 TRANSLATION protein_coding - CCDS52819.1 1 234.0 5.0 2.1 0.0 46.1 0.0 -4,-5 0.129 4 11.0 ALTERNATIVE:2 ENSMUSG00000032469 Dbr1 ENSMUST00000138002 ENSMUSP00000119924 TRANSLATION protein_coding start/stop - 3 164.0 6.0 4.83 0.0 20.6 0.0 -4,-7 0.0004 1 -2.0 MINOR ENSMUSG00000032469 Dbr1 ENSMUST00000066650 ENSMUSP00000070991 TRANSLATION protein_coding - CCDS23435.1 1 550.0 9.0 9.59 3.5 157.2 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000032469 Dbr1 ENSMUST00000148987 ENSMUSP00000115074 TRANSLATION protein_coding stop - 3 231.0 5.0 5.91 0.0 100.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000032469 Dbr1 ENSMUST00000156035 ENSMUSP00000115978 TRANSLATION protein_coding start - 5 148.0 2.0 3.16 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032469 Dbr1 ENSMUST00000139796 ENSMUSP00000115203 TRANSLATION nonsense_mediated_decay start - 3 83.0 2.0 2.5 0.0 33.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032469 Dbr1 ENSMUST00000136884 ENSMUSP00000114670 TRANSLATION protein_coding start - 2 151.0 2.0 3.28 0.0 73.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000032589 Bsn ENSMUST00000035208 ENSMUSP00000035208 TRANSLATION protein_coding - CCDS23517.1 5 3942.0 0.0 0.0 0.0 186.7 0.0 -4,-5 1.0 103 6.0 PRINCIPAL:1 ENSMUSG00000032589 Bsn ENSMUST00000124763 ENSMUSP00000139053 TRANSLATION protein_coding start - 1 1171.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.017 30 -2.0 MINOR ENSMUSG00000079592 C1qtnf5 ENSMUST00000114816 ENSMUSP00000110464 TRANSLATION protein_coding - CCDS52777.1 1 243.0 0.0 3.7 12.9 159.6 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000079592 C1qtnf5 ENSMUST00000206295 ENSMUSP00000146051 TRANSLATION protein_coding stop - 5 50.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000079592 C1qtnf5 ENSMUST00000205500 ENSMUSP00000145546 TRANSLATION protein_coding stop - 2 154.0 0.0 2.2 0.0 93.2 0.0 4,-1 0.0 2 -2.0 MINOR ENSMUSG00000079592 C1qtnf5 ENSMUST00000114815 ENSMUSP00000110463 TRANSLATION protein_coding - CCDS52777.1 1 243.0 0.0 3.7 12.9 159.6 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000079592 C1qtnf5 ENSMUST00000114818 ENSMUSP00000110466 TRANSLATION protein_coding - CCDS52777.1 5 243.0 0.0 3.7 12.9 159.6 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000079592 C1qtnf5 ENSMUST00000114821 ENSMUSP00000110469 TRANSLATION protein_coding - CCDS52777.1 2 243.0 0.0 3.7 12.9 159.6 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000079592 C1qtnf5 ENSMUST00000206769 ENSMUSP00000145714 TRANSLATION protein_coding stop - 5 142.0 0.0 2.5 0.0 123.8 0.0 -4,-7 0.0012 3 -2.0 MINOR ENSMUSG00000079592 C1qtnf5 ENSMUST00000152956 ENSMUSP00000123040 TRANSLATION protein_coding stop - 2 137.0 0.0 1.7 0.0 33.4 0.0 4,-1 0.0008 1 -2.0 MINOR ENSMUSG00000032303 Chrna3 ENSMUST00000238862 ENSMUSP00000158914 TRANSLATION protein_coding - CCDS23199.1 - 504.0 0.0 3.83 0.0 564.1 5.0 3,-1 0.8611 - 8.0 ALTERNATIVE:2 ENSMUSG00000032303 Chrna3 ENSMUST00000214204 ENSMUSP00000150636 TRANSLATION protein_coding - - 1 471.0 0.0 3.5 0.0 504.4 4.0 4,-1 0.0274 - 6.674 MINOR ENSMUSG00000032303 Chrna3 ENSMUST00000034851 ENSMUSP00000034851 TRANSLATION protein_coding - - 1 499.0 0.0 3.83 0.1 564.1 5.0 4,-1 0.8912 - 8.0 PRINCIPAL:4 ENSMUSG00000013076 Amotl1 ENSMUST00000223132 ENSMUSP00000152834 TRANSLATION protein_coding - - 5 1005.0 0.0 0.0 0.1 306.4 0.0 -4,-5 0.2429 7 2.0 ALTERNATIVE:2 ENSMUSG00000013076 Amotl1 ENSMUST00000162901 ENSMUSP00000152243 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000013076 Amotl1 ENSMUST00000162802 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013076 Amotl1 ENSMUST00000160770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013076 Amotl1 ENSMUST00000013220 ENSMUSP00000013220 TRANSLATION protein_coding - CCDS40535.1 1 968.0 0.0 0.0 1.2 306.4 0.0 -4,-2 1.0 7 3.0 PRINCIPAL:2 ENSMUSG00000013076 Amotl1 ENSMUST00000161171 - NO_TRANSLATION retained_intron ENSMUSG00000060594 Layn ENSMUST00000214993 ENSMUSP00000149794 TRANSLATION protein_coding stop - 2 122.0 3.0 0.55 0.0 36.9 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000060594 Layn ENSMUST00000214090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060594 Layn ENSMUST00000217212 ENSMUSP00000150681 TRANSLATION protein_coding - - 1 320.0 9.0 1.543 0.0 60.2 1.0 -1,-4 0.0843 1 12.0 ALTERNATIVE:2 ENSMUSG00000060594 Layn ENSMUST00000098782 ENSMUSP00000096379 TRANSLATION protein_coding - CCDS52791.1 5 381.0 9.0 1.543 3.3 60.2 1.0 -1,-4 1.0 1 13.0 PRINCIPAL:2 ENSMUSG00000032274 Cyp19a1 ENSMUST00000215736 ENSMUSP00000150729 TRANSLATION protein_coding - - 1 436.0 38.0 8.0 1.1 348.5 0.0 -4,-5 0.0509 - 16.734 MINOR ENSMUSG00000032274 Cyp19a1 ENSMUST00000034811 ENSMUSP00000034811 TRANSLATION protein_coding - CCDS23187.1 1 503.0 38.0 8.5 16.7 353.3 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000032274 Cyp19a1 ENSMUST00000214358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032274 Cyp19a1 ENSMUST00000217040 - NO_TRANSLATION retained_intron ENSMUSG00000032274 Cyp19a1 ENSMUST00000216974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032402 Smad3 ENSMUST00000137713 ENSMUSP00000121671 TRANSLATION protein_coding stop - 3 113.0 0.0 1.7 0.0 112.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032402 Smad3 ENSMUST00000133108 ENSMUSP00000122217 TRANSLATION protein_coding start/stop - 5 143.0 4.0 1.132 0.0 101.0 0.0 -4,-2 0.0004 1 -2.0 MINOR ENSMUSG00000032402 Smad3 ENSMUST00000034973 ENSMUSP00000034973 TRANSLATION protein_coding - CCDS23272.1 1 425.0 4.0 6.45 31.6 413.6 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000032402 Smad3 ENSMUST00000137065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032402 Smad3 ENSMUST00000154323 ENSMUSP00000116790 TRANSLATION protein_coding stop - 5 233.0 3.0 2.37 0.0 197.1 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000036943 Rab8b ENSMUST00000041139 ENSMUSP00000041857 TRANSLATION protein_coding - CCDS23309.1 1 207.0 23.0 6.0 35.7 226.0 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000090693 Trim43a ENSMUST00000215498 ENSMUSP00000149926 TRANSLATION protein_coding stop - 2 6.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0127 - -2.0 MINOR ENSMUSG00000090693 Trim43a ENSMUST00000164661 ENSMUSP00000127527 TRANSLATION protein_coding - CCDS23389.1 1 445.0 8.0 2.486 0.0 30.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000090693 Trim43a ENSMUST00000216686 ENSMUSP00000150842 TRANSLATION protein_coding stop - 5 35.0 0.0 0.561 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040883 Tmem205 ENSMUST00000238930 ENSMUSP00000158874 TRANSLATION protein_coding - CCDS22913.1 - 189.0 0.0 3.5 10.0 85.6 5.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000040883 Tmem205 ENSMUST00000213698 ENSMUSP00000150045 TRANSLATION protein_coding - CCDS22913.1 3 189.0 0.0 3.5 10.0 85.6 5.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000040883 Tmem205 ENSMUST00000046831 ENSMUSP00000048832 TRANSLATION protein_coding - CCDS22913.1 1 189.0 0.0 3.5 10.0 85.6 5.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000040883 Tmem205 ENSMUST00000217263 - NO_TRANSLATION retained_intron ENSMUSG00000040883 Tmem205 ENSMUST00000215650 - NO_TRANSLATION retained_intron ENSMUSG00000040883 Tmem205 ENSMUST00000216178 - NO_TRANSLATION retained_intron ENSMUSG00000040883 Tmem205 ENSMUST00000214569 ENSMUSP00000149824 TRANSLATION protein_coding stop - 3 173.0 0.0 3.0 0.0 85.6 4.0 -4,-5 0.0163 4 -2.0 MINOR ENSMUSG00000003410 Elavl3 ENSMUST00000215901 ENSMUSP00000149816 TRANSLATION protein_coding - - 1 250.0 0.0 4.63 0.0 138.6 0.0 -4,-5 0.0002 6 5.604 MINOR ENSMUSG00000003410 Elavl3 ENSMUST00000213700 ENSMUSP00000150771 TRANSLATION protein_coding start/stop - 3 132.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000003410 Elavl3 ENSMUST00000003501 ENSMUSP00000003501 TRANSLATION protein_coding - CCDS52741.1 1 367.0 0.0 5.63 22.3 211.9 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000040219 Ttc12 ENSMUST00000055096 ENSMUSP00000056378 TRANSLATION protein_coding - CCDS23163.1 1 704.0 0.0 16.06534 7.1 53.4 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000040219 Ttc12 ENSMUST00000146666 - NO_TRANSLATION retained_intron ENSMUSG00000056919 Cep162 ENSMUST00000188289 - NO_TRANSLATION retained_intron ENSMUSG00000056919 Cep162 ENSMUST00000093802 ENSMUSP00000091319 TRANSLATION protein_coding - CCDS52879.1 1 1403.0 0.0 0.0 0.1 0.0 0.0 -4,-5 1.0 9 0.0 PRINCIPAL:1 ENSMUSG00000056919 Cep162 ENSMUST00000144137 - NO_TRANSLATION retained_intron ENSMUSG00000056919 Cep162 ENSMUST00000139301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023249 Parp3 ENSMUST00000145396 - NO_TRANSLATION retained_intron ENSMUSG00000023249 Parp3 ENSMUST00000139362 - NO_TRANSLATION retained_intron ENSMUSG00000023249 Parp3 ENSMUST00000125850 ENSMUSP00000119244 TRANSLATION protein_coding stop - 3 171.0 0.0 2.4 0.0 97.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000023249 Parp3 ENSMUST00000067218 ENSMUSP00000064513 TRANSLATION protein_coding - CCDS23480.1 1 528.0 2.0 9.98 5.1 421.9 0.0 -4,-7 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000023249 Parp3 ENSMUST00000140029 - NO_TRANSLATION retained_intron ENSMUSG00000023249 Parp3 ENSMUST00000156426 ENSMUSP00000117329 TRANSLATION protein_coding stop - 3 202.0 0.0 3.4 0.0 97.0 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000023249 Parp3 ENSMUST00000214682 ENSMUSP00000149572 TRANSLATION protein_coding stop - 5 351.0 0.0 6.48 0.0 274.0 0.0 -4,-7 0.0 10 -2.0 MINOR ENSMUSG00000023249 Parp3 ENSMUST00000123555 ENSMUSP00000123054 TRANSLATION protein_coding - CCDS23480.1 1 528.0 2.0 9.98 5.1 421.9 0.0 -4,-7 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000023249 Parp3 ENSMUST00000112479 ENSMUSP00000108098 TRANSLATION protein_coding - CCDS81066.1 1 533.0 2.0 9.98 0.4 421.9 0.0 -4,-7 0.381 17 14.0 MINOR ENSMUSG00000059595 Or8g21 ENSMUST00000080748 ENSMUSP00000079572 TRANSLATION protein_coding - CCDS23035.1 - 308.0 0.0 1.0 11.4 179.1 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059595 Or8g21 ENSMUST00000214157 ENSMUSP00000149193 TRANSLATION protein_coding - CCDS23035.1 3 308.0 0.0 1.0 11.4 179.1 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038742 Angptl6 ENSMUST00000043726 ENSMUSP00000035784 TRANSLATION protein_coding - CCDS22886.1 1 457.0 10.0 3.132 0.1 221.3 0.0 1,0 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000054836 Elp6 ENSMUST00000199114 ENSMUSP00000143622 TRANSLATION protein_coding stop - 2 166.0 0.0 0.0 0.0 205.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000054836 Elp6 ENSMUST00000198247 ENSMUSP00000143595 TRANSLATION nonsense_mediated_decay - - 5 110.0 0.0 0.0 0.0 179.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000054836 Elp6 ENSMUST00000199592 ENSMUSP00000142823 TRANSLATION protein_coding - CCDS52937.1 1 266.0 0.0 0.0 14.7 378.7 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000054836 Elp6 ENSMUST00000068071 ENSMUSP00000069017 TRANSLATION protein_coding - - 1 263.0 0.0 0.0 0.0 355.2 0.0 -4,-5 0.0275 6 4.59 MINOR ENSMUSG00000054836 Elp6 ENSMUST00000196855 - NO_TRANSLATION retained_intron ENSMUSG00000098847 Gm27235 ENSMUST00000184431 ENSMUSP00000139380 TRANSLATION nonsense_mediated_decay,RT - - 1 83.0 0.0 1.0 0.0 0.0 0.0 2,-3 0.7491 - -2.0 PRINCIPAL:1 ENSMUSG00000040204 Pclaf ENSMUST00000045802 ENSMUSP00000038877 TRANSLATION protein_coding - CCDS23299.1 1 110.0 0.0 0.8 14.1 117.0 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000040204 Pclaf ENSMUST00000130308 - NO_TRANSLATION retained_intron ENSMUSG00000040204 Pclaf ENSMUST00000153841 - NO_TRANSLATION retained_intron ENSMUSG00000045620 Odf3l1 ENSMUST00000055036 ENSMUSP00000060418 TRANSLATION protein_coding - CCDS23210.1 1 275.0 0.0 0.2 11.0 13.9 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000045620 Odf3l1 ENSMUST00000215694 ENSMUSP00000149166 TRANSLATION protein_coding - - 1 306.0 0.0 0.2 0.0 13.9 0.0 -4,-6 0.0474 2 12.0 MINOR ENSMUSG00000078307 AI593442 ENSMUST00000213937 ENSMUSP00000149532 TRANSLATION protein_coding - CCDS52795.1 2 199.0 0.0 0.2 6.4 0.0 1.0 -3,-1 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000078307 AI593442 ENSMUST00000213843 ENSMUSP00000149128 TRANSLATION protein_coding stop - 1 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0123 - -2.0 MINOR ENSMUSG00000078307 AI593442 ENSMUST00000098768 ENSMUSP00000096365 TRANSLATION protein_coding - CCDS52795.1 1 199.0 0.0 0.2 6.4 0.0 1.0 -3,-1 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000079162 Trim43b ENSMUST00000189557 ENSMUSP00000139457 TRANSLATION protein_coding - - 1 444.0 8.0 2.445 0.0 30.1 0.0 -4,-5 0.7419 - 14.0 PRINCIPAL:4 ENSMUSG00000079162 Trim43b ENSMUST00000167113 ENSMUSP00000126594 TRANSLATION protein_coding - CCDS52884.1 1 445.0 8.0 2.445 0.0 30.1 0.0 -4,-5 0.7118 - 14.0 ALTERNATIVE:2 ENSMUSG00000002033 Cd3g ENSMUST00000159019 - NO_TRANSLATION retained_intron ENSMUSG00000002033 Cd3g ENSMUST00000002101 ENSMUSP00000002101 TRANSLATION protein_coding - CCDS23123.1 1 182.0 0.0 2.66 8.6 124.6 0.0 3,-1 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000002033 Cd3g ENSMUST00000160886 ENSMUSP00000125151 TRANSLATION protein_coding stop - 5 100.0 0.0 1.0 0.0 89.9 0.0 2,-2 0.0 4 -2.0 MINOR ENSMUSG00000066748 Or8b8 ENSMUST00000213688 ENSMUSP00000150284 TRANSLATION protein_coding - CCDS22990.1 5 310.0 0.0 1.0 11.4 169.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066748 Or8b8 ENSMUST00000086062 ENSMUSP00000083229 TRANSLATION protein_coding - CCDS22990.1 - 310.0 0.0 1.0 11.4 169.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000064333 Or8d2b ENSMUST00000078289 ENSMUSP00000077405 TRANSLATION protein_coding - CCDS23031.1 - 308.0 0.0 1.0 2.3 179.5 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051238 Swsap1 ENSMUST00000053583 ENSMUSP00000060331 TRANSLATION protein_coding - CCDS52739.1 1 278.0 0.0 0.0 0.9 0.0 0.0 -4,-7 0.8667 3 0.0 PRINCIPAL:1 ENSMUSG00000041012 Cmtm8 ENSMUST00000213929 - NO_TRANSLATION retained_intron ENSMUSG00000041012 Cmtm8 ENSMUST00000047013 ENSMUSP00000043706 TRANSLATION protein_coding - CCDS23597.1 1 173.0 0.0 1.65 13.2 72.4 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000041012 Cmtm8 ENSMUST00000213264 - NO_TRANSLATION retained_intron ENSMUSG00000032057 Hoatz ENSMUST00000170947 ENSMUSP00000126725 TRANSLATION protein_coding - CCDS40628.1 1 168.0 0.0 0.0 5.1 0.0 0.0 -4,-6 0.9516 - 2.0 PRINCIPAL:1 ENSMUSG00000058444 Map2k5 ENSMUST00000216999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058444 Map2k5 ENSMUST00000034920 ENSMUSP00000034920 TRANSLATION protein_coding - CCDS23269.1 1 448.0 18.0 11.426 14.9 260.2 0.0 -4,-7 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000058444 Map2k5 ENSMUST00000213604 - NO_TRANSLATION retained_intron ENSMUSG00000020258 Glyctk ENSMUST00000159809 ENSMUSP00000125369 TRANSLATION protein_coding stop - 3 92.0 0.0 0.0 0.0 28.5 0.0 -3,0 0.0 3 -2.0 MINOR ENSMUSG00000020258 Glyctk ENSMUST00000162562 ENSMUSP00000125392 TRANSLATION protein_coding stop - 5 126.0 0.0 0.0 0.0 52.9 0.0 -3,0 0.0 4 -2.0 MINOR ENSMUSG00000020258 Glyctk ENSMUST00000217417 ENSMUSP00000150455 TRANSLATION protein_coding start - 5 133.0 0.0 0.5 0.0 31.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020258 Glyctk ENSMUST00000112543 ENSMUSP00000108162 TRANSLATION protein_coding - CCDS23469.1 1 523.0 0.0 2.39 10.3 402.6 0.0 -3,0 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000020258 Glyctk ENSMUST00000036382 ENSMUSP00000047761 TRANSLATION protein_coding - CCDS23469.1 1 523.0 0.0 2.39 10.3 402.6 0.0 -3,0 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000066899 Or8b12i ENSMUST00000215984 ENSMUSP00000150084 TRANSLATION protein_coding - CCDS22872.1 5 311.0 0.0 1.0 6.6 176.9 5.0 -3,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000066899 Or8b12i ENSMUST00000086476 ENSMUSP00000091405 TRANSLATION protein_coding - CCDS22872.1 - 311.0 0.0 1.0 6.6 176.9 5.0 -3,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000056880 Gadl1 ENSMUST00000069651 ENSMUSP00000077694 TRANSLATION protein_coding - - 5 522.0 17.0 12.25 2.5 371.9 0.0 -4,-5 0.2498 - 18.492 MINOR ENSMUSG00000056880 Gadl1 ENSMUST00000240548 ENSMUSP00000159481 TRANSLATION protein_coding - CCDS52954.1 - 502.0 17.0 12.25 7.1 371.9 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000056880 Gadl1 ENSMUST00000119291 ENSMUSP00000112433 TRANSLATION protein_coding - - 1 478.0 16.0 11.25 0.0 371.9 0.0 -4,-5 0.0309 - 15.336 MINOR ENSMUSG00000056880 Gadl1 ENSMUST00000121770 ENSMUSP00000113240 TRANSLATION protein_coding - - 5 478.0 16.0 11.25 0.0 371.9 0.0 -4,-5 0.0309 - 15.336 MINOR ENSMUSG00000056880 Gadl1 ENSMUST00000240547 ENSMUSP00000159480 TRANSLATION protein_coding - CCDS52954.1 - 502.0 17.0 12.25 7.1 371.9 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000032198 Dock6 ENSMUST00000217515 - NO_TRANSLATION retained_intron ENSMUSG00000032198 Dock6 ENSMUST00000213775 - NO_TRANSLATION retained_intron ENSMUSG00000032198 Dock6 ENSMUST00000217310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032198 Dock6 ENSMUST00000215729 ENSMUSP00000150250 TRANSLATION nonsense_mediated_decay start - 1 577.0 0.0 0.64 0.0 219.5 0.0 -4,-6 0.001 7 -2.0 MINOR ENSMUSG00000032198 Dock6 ENSMUST00000213296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032198 Dock6 ENSMUST00000216626 ENSMUSP00000150347 TRANSLATION protein_coding start - 1 477.0 0.0 3.9 0.0 149.2 0.0 -4,0 0.0005 6 -2.0 MINOR ENSMUSG00000032198 Dock6 ENSMUST00000217336 ENSMUSP00000149156 TRANSLATION protein_coding - CCDS40555.1 5 2111.0 0.0 11.54 7.2 948.5 0.0 -4,0 1.0 26 10.0 PRINCIPAL:3 ENSMUSG00000032198 Dock6 ENSMUST00000034728 ENSMUSP00000034728 TRANSLATION protein_coding - - 5 2080.0 0.0 11.54 5.7 948.5 0.0 -4,0 0.7709 25 9.516 ALTERNATIVE:1 ENSMUSG00000032423 Syncrip ENSMUST00000173405 ENSMUSP00000133343 TRANSLATION protein_coding stop - 3 196.0 0.0 5.49 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000032423 Syncrip ENSMUST00000174269 ENSMUSP00000134506 TRANSLATION protein_coding - - 5 527.0 0.0 10.24 2.1 143.5 0.0 -4,-5 0.0834 17 5.694 MINOR ENSMUSG00000032423 Syncrip ENSMUST00000174282 ENSMUSP00000134071 TRANSLATION protein_coding - CCDS72292.1 1 561.0 0.0 11.24 23.7 147.6 0.0 -4,-5 1.0 17 12.0 ALTERNATIVE:1 ENSMUSG00000032423 Syncrip ENSMUST00000174391 ENSMUSP00000134342 TRANSLATION protein_coding - CCDS81048.1 1 464.0 0.0 8.91 7.0 148.0 0.0 -4,-5 0.3087 13 4.394 MINOR ENSMUSG00000032423 Syncrip ENSMUST00000174361 ENSMUSP00000134722 TRANSLATION protein_coding - - 5 588.0 0.0 10.24 2.1 143.5 0.0 -4,-5 0.099 19 5.694 MINOR ENSMUSG00000032423 Syncrip ENSMUST00000172508 ENSMUSP00000133292 TRANSLATION protein_coding stop - 5 94.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032423 Syncrip ENSMUST00000069221 ENSMUSP00000063744 TRANSLATION protein_coding - CCDS23388.1 1 562.0 0.0 11.24 20.7 147.6 0.0 -4,-5 0.9857 17 11.472 ALTERNATIVE:1 ENSMUSG00000032423 Syncrip ENSMUST00000187770 - NO_TRANSLATION retained_intron ENSMUSG00000032423 Syncrip ENSMUST00000174688 ENSMUSP00000133716 TRANSLATION protein_coding - - 5 448.0 0.0 8.24 0.0 107.0 0.0 -4,-5 0.0003 13 0.5 MINOR ENSMUSG00000032423 Syncrip ENSMUST00000174145 - NO_TRANSLATION retained_intron ENSMUSG00000032423 Syncrip ENSMUST00000172828 ENSMUSP00000133829 TRANSLATION nonsense_mediated_decay - - 5 67.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032423 Syncrip ENSMUST00000249617 ENSMUSP00000159826 TRANSLATION protein_coding - - - 678.0 0.0 11.24 0.0 147.6 0.0 -4,-2 0.0622 19 8.0 MINOR ENSMUSG00000032423 Syncrip ENSMUST00000173801 ENSMUSP00000133649 TRANSLATION protein_coding - CCDS57686.1 1 623.0 0.0 11.24 23.5 147.6 0.0 -4,-5 0.9189 19 11.964 PRINCIPAL:3 ENSMUSG00000074062 Fbxw16 ENSMUST00000196410 - NO_TRANSLATION retained_intron ENSMUSG00000074062 Fbxw16 ENSMUST00000084984 ENSMUSP00000082051 TRANSLATION protein_coding - CCDS40773.1 1 464.0 0.0 1.36 0.3 39.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000052182 Or7g30 ENSMUST00000217273 ENSMUSP00000149769 TRANSLATION protein_coding - CCDS22857.1 5 312.0 0.0 1.0 9.3 173.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052182 Or7g30 ENSMUST00000063923 ENSMUSP00000064123 TRANSLATION protein_coding - CCDS22857.1 - 312.0 0.0 1.0 9.3 173.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040433 Zbtb38 ENSMUST00000132060 - NO_TRANSLATION retained_intron ENSMUSG00000040433 Zbtb38 ENSMUST00000152594 ENSMUSP00000121753 TRANSLATION protein_coding - CCDS40731.1 2 1197.0 36.0 1.3 3.4 147.3 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000040433 Zbtb38 ENSMUST00000126066 ENSMUSP00000114300 TRANSLATION non_stop_decay stop - 1 924.0 16.0 0.7 0.0 92.8 0.0 -4,-5 0.0096 8 -2.0 MINOR ENSMUSG00000040433 Zbtb38 ENSMUST00000143906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040433 Zbtb38 ENSMUST00000093798 ENSMUSP00000091315 TRANSLATION protein_coding - CCDS40731.1 2 1197.0 36.0 1.3 3.4 147.3 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000040433 Zbtb38 ENSMUST00000130078 - NO_TRANSLATION retained_intron ENSMUSG00000040433 Zbtb38 ENSMUST00000128269 ENSMUSP00000121871 TRANSLATION protein_coding stop - 3 184.0 0.0 0.5 0.0 82.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040433 Zbtb38 ENSMUST00000137858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040433 Zbtb38 ENSMUST00000147314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040433 Zbtb38 ENSMUST00000140121 ENSMUSP00000120040 TRANSLATION protein_coding stop - 1 544.0 16.0 0.7 0.0 92.8 0.0 -4,-5 0.001 4 -2.0 MINOR ENSMUSG00000040433 Zbtb38 ENSMUST00000124186 - NO_TRANSLATION retained_intron ENSMUSG00000040433 Zbtb38 ENSMUST00000143403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052698 Tln2 ENSMUST00000214859 ENSMUSP00000149137 TRANSLATION protein_coding start - 1 923.0 0.0 19.05 0.0 187.7 0.0 -4,-5 0.0043 32 -2.0 MINOR ENSMUSG00000052698 Tln2 ENSMUST00000215267 ENSMUSP00000149284 TRANSLATION protein_coding - - 1 1452.0 0.0 30.55 0.0 382.9 0.0 -4,-5 0.0326 45 0.0 MINOR ENSMUSG00000052698 Tln2 ENSMUST00000216799 - NO_TRANSLATION retained_intron ENSMUSG00000052698 Tln2 ENSMUST00000217550 ENSMUSP00000149474 TRANSLATION protein_coding start - 1 1471.0 0.0 31.05 0.0 396.1 0.0 -4,-5 0.0331 47 -2.0 MINOR ENSMUSG00000052698 Tln2 ENSMUST00000213584 ENSMUSP00000151111 TRANSLATION protein_coding stop - 1 137.0 0.0 3.5 0.0 179.4 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000052698 Tln2 ENSMUST00000040025 ENSMUSP00000039633 TRANSLATION protein_coding - CCDS52849.1 5 2542.0 0.0 53.8 32.1 913.8 0.0 -4,-7 1.0 81 12.0 PRINCIPAL:4 ENSMUSG00000052698 Tln2 ENSMUST00000215593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052698 Tln2 ENSMUST00000215784 ENSMUSP00000148901 TRANSLATION protein_coding - - 5 2544.0 0.0 53.8 32.1 913.8 0.0 -4,-7 0.8699 81 12.0 ALTERNATIVE:1 ENSMUSG00000052698 Tln2 ENSMUST00000039662 ENSMUSP00000035272 TRANSLATION protein_coding - CCDS52849.1 1 2542.0 0.0 53.8 32.1 913.8 0.0 -4,-7 1.0 81 12.0 PRINCIPAL:4 ENSMUSG00000032369 Plscr1 ENSMUST00000186364 ENSMUSP00000139479 TRANSLATION protein_coding - CCDS52886.1 1 328.0 0.0 0.0 4.4 324.0 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000032369 Plscr1 ENSMUST00000187952 - NO_TRANSLATION retained_intron ENSMUSG00000032369 Plscr1 ENSMUST00000093801 ENSMUSP00000091318 TRANSLATION protein_coding - CCDS52886.1 1 328.0 0.0 0.0 4.4 324.0 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000045528 Or8c13 ENSMUST00000062535 ENSMUSP00000055451 TRANSLATION protein_coding - CCDS22999.1 - 316.0 0.0 1.0 1.3 126.6 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000045414 Dipk2a ENSMUST00000113028 ENSMUSP00000108651 TRANSLATION protein_coding - CCDS40725.1 1 430.0 0.0 2.0 25.0 180.8 0.0 2,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000032575 Manf ENSMUST00000160503 ENSMUSP00000124453 TRANSLATION protein_coding start - 3 128.0 0.0 3.13 0.0 140.3 0.0 -4,-5 0.0002 8 -2.0 MINOR ENSMUSG00000032575 Manf ENSMUST00000160978 - NO_TRANSLATION retained_intron ENSMUSG00000032575 Manf ENSMUST00000162801 - NO_TRANSLATION retained_intron ENSMUSG00000032575 Manf ENSMUST00000159620 ENSMUSP00000123907 TRANSLATION protein_coding start - 3 121.0 0.0 3.062 0.0 140.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000032575 Manf ENSMUST00000069036 ENSMUSP00000066534 TRANSLATION protein_coding - - 1 165.0 0.0 3.33 0.0 228.9 0.0 -4,-5 0.0087 13 10.494 MINOR ENSMUSG00000032575 Manf ENSMUST00000159283 ENSMUSP00000124562 TRANSLATION protein_coding - CCDS23486.1 1 179.0 0.0 3.93 25.2 234.0 0.0 3,-2 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000032575 Manf ENSMUST00000161272 ENSMUSP00000125424 TRANSLATION protein_coding start - 3 52.0 0.0 1.132 0.0 65.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000074060 Fbxw15 ENSMUST00000198112 ENSMUSP00000142894 TRANSLATION protein_coding stop - 3 250.0 0.0 2.0 0.0 42.8 0.0 -4,-6 0.0094 - -2.0 MINOR ENSMUSG00000074060 Fbxw15 ENSMUST00000056745 ENSMUSP00000058175 TRANSLATION protein_coding - CCDS23553.1 1 466.0 0.0 2.415 0.3 42.8 0.0 -4,-6 0.3219 - 8.0 ALTERNATIVE:2 ENSMUSG00000074060 Fbxw15 ENSMUST00000198397 ENSMUSP00000143385 TRANSLATION protein_coding - - 1 283.0 0.0 2.415 0.0 42.8 0.0 -4,-6 0.7343 - 8.0 PRINCIPAL:2 ENSMUSG00000032245 Cln6 ENSMUST00000138276 ENSMUSP00000117833 TRANSLATION nonsense_mediated_decay start - 3 18.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032245 Cln6 ENSMUST00000034776 ENSMUSP00000034776 TRANSLATION protein_coding - CCDS23267.1 1 308.0 0.0 6.5 15.5 544.2 4.0 -3,1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032245 Cln6 ENSMUST00000124984 ENSMUSP00000115675 TRANSLATION protein_coding start - 3 191.0 0.0 2.5 0.0 275.0 2.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000032245 Cln6 ENSMUST00000141821 ENSMUSP00000114283 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0004 1 -2.0 MINOR ENSMUSG00000095893 Or8b37 ENSMUST00000181088 ENSMUSP00000138035 TRANSLATION protein_coding - CCDS22994.1 2 309.0 0.0 1.0 9.4 171.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095893 Or8b37 ENSMUST00000077732 ENSMUSP00000076912 TRANSLATION protein_coding - CCDS22994.1 - 309.0 0.0 1.0 9.4 171.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094778 Or8c8 ENSMUST00000093865 ENSMUSP00000091388 TRANSLATION protein_coding - CCDS23002.1 - 313.0 0.0 1.0 10.4 166.0 6.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000094778 Or8c8 ENSMUST00000213129 ENSMUSP00000149842 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 10.4 166.0 6.0 -4,-7 0.8793 - 11.0 ALTERNATIVE:1 ENSMUSG00000043067 Dpy19l1 ENSMUST00000129048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043067 Dpy19l1 ENSMUST00000115277 ENSMUSP00000110932 TRANSLATION protein_coding - - 2 552.0 0.0 8.1195 0.0 647.6 8.0 -4,-7 0.0196 4 1.698 MINOR ENSMUSG00000043067 Dpy19l1 ENSMUST00000142064 ENSMUSP00000119986 TRANSLATION protein_coding - CCDS22931.2 5 746.0 0.0 10.2695 3.5 808.5 8.0 -4,0 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000043067 Dpy19l1 ENSMUST00000149001 - NO_TRANSLATION retained_intron ENSMUSG00000043067 Dpy19l1 ENSMUST00000170356 ENSMUSP00000129575 TRANSLATION protein_coding - CCDS22931.2 5 746.0 0.0 10.2695 3.5 808.5 8.0 -4,0 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000043067 Dpy19l1 ENSMUST00000152480 - NO_TRANSLATION retained_intron ENSMUSG00000038412 Higd1a ENSMUST00000214988 ENSMUSP00000149331 TRANSLATION protein_coding stop - 3 63.0 0.0 2.0 0.0 34.2 1.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000038412 Higd1a ENSMUST00000060251 ENSMUSP00000054881 TRANSLATION protein_coding - CCDS40812.1 1 95.0 0.0 3.0 18.7 66.0 2.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038412 Higd1a ENSMUST00000215300 ENSMUSP00000150726 TRANSLATION protein_coding - CCDS40812.1 3 95.0 0.0 3.0 18.7 66.0 2.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038412 Higd1a ENSMUST00000216914 ENSMUSP00000150189 TRANSLATION protein_coding stop - 3 76.0 0.0 2.5 0.0 63.0 1.0 -4,-5 0.0061 - -2.0 MINOR ENSMUSG00000038412 Higd1a ENSMUST00000215007 ENSMUSP00000150629 TRANSLATION protein_coding - - 1 99.0 0.0 2.5 0.0 66.0 3.0 -4,-5 0.025 - 10.998 MINOR ENSMUSG00000038412 Higd1a ENSMUST00000213147 ENSMUSP00000150962 TRANSLATION protein_coding stop - 3 84.0 0.0 2.5 0.0 66.0 3.0 -4,-5 0.015 - -2.0 MINOR ENSMUSG00000038412 Higd1a ENSMUST00000213124 ENSMUSP00000149531 TRANSLATION protein_coding - CCDS40812.1 5 95.0 0.0 3.0 18.7 66.0 2.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032872 Cyb5r4 ENSMUST00000168529 ENSMUSP00000126119 TRANSLATION protein_coding - CCDS40716.2 1 528.0 32.0 11.38 9.2 266.6 0.0 -4,-2 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000032872 Cyb5r4 ENSMUST00000174540 - NO_TRANSLATION retained_intron ENSMUSG00000032872 Cyb5r4 ENSMUST00000174724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032872 Cyb5r4 ENSMUST00000174043 - NO_TRANSLATION retained_intron ENSMUSG00000032872 Cyb5r4 ENSMUST00000174294 ENSMUSP00000133918 TRANSLATION nonsense_mediated_decay start - 3 89.0 3.0 1.75 0.0 36.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008429 Herpud2 ENSMUST00000008573 ENSMUSP00000008573 TRANSLATION protein_coding - CCDS22934.1 1 404.0 0.0 2.35 14.7 30.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000008429 Herpud2 ENSMUST00000214190 - NO_TRANSLATION retained_intron ENSMUSG00000032315 Cyp1a1 ENSMUST00000034865 ENSMUSP00000034865 TRANSLATION protein_coding - CCDS23230.1 1 524.0 29.0 5.75 3.5 368.6 0.0 2,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000032315 Cyp1a1 ENSMUST00000216433 ENSMUSP00000150277 TRANSLATION protein_coding - CCDS23230.1 1 524.0 29.0 5.75 3.5 368.6 0.0 2,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000025235 Bbs4 ENSMUST00000026265 ENSMUSP00000026265 TRANSLATION protein_coding - CCDS40658.1 1 520.0 0.0 11.0 7.8 96.8 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000025235 Bbs4 ENSMUST00000214832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025235 Bbs4 ENSMUST00000217367 ENSMUSP00000150973 TRANSLATION protein_coding start - 3 150.0 0.0 3.5 0.0 53.5 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000025235 Bbs4 ENSMUST00000214225 - NO_TRANSLATION retained_intron ENSMUSG00000060254 Or10g9b ENSMUST00000073932 ENSMUSP00000091386 TRANSLATION protein_coding - CCDS23071.1 - 310.0 0.0 1.0 10.7 187.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060254 Or10g9b ENSMUST00000216463 ENSMUSP00000150496 TRANSLATION protein_coding - CCDS23071.1 5 310.0 0.0 1.0 10.7 187.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000010054 Tusc2 ENSMUST00000010198 ENSMUSP00000010198 TRANSLATION protein_coding - CCDS23495.1 1 110.0 0.0 2.08 30.9 145.2 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000010054 Tusc2 ENSMUST00000193292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010054 Tusc2 ENSMUST00000193418 ENSMUSP00000141635 TRANSLATION protein_coding - - 3 102.0 0.0 1.75 14.0 113.0 0.0 -4,-2 0.3986 1 10.854 MINOR ENSMUSG00000032220 Myo1e ENSMUST00000214767 - NO_TRANSLATION retained_intron ENSMUSG00000032220 Myo1e ENSMUST00000034745 ENSMUSP00000034745 TRANSLATION protein_coding - CCDS40680.1 1 1107.0 15.0 17.076 16.2 1084.0 0.0 -4,-7 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000032220 Myo1e ENSMUST00000214042 ENSMUSP00000150376 TRANSLATION nonsense_mediated_decay - - 1 116.0 6.0 2.6 0.0 116.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000032220 Myo1e ENSMUST00000213863 - NO_TRANSLATION retained_intron ENSMUSG00000032292 Nr2e3 ENSMUST00000138888 - NO_TRANSLATION retained_intron ENSMUSG00000032292 Nr2e3 ENSMUST00000143377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032292 Nr2e3 ENSMUST00000147892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032292 Nr2e3 ENSMUST00000144391 - NO_TRANSLATION retained_intron ENSMUSG00000032292 Nr2e3 ENSMUST00000156845 - NO_TRANSLATION retained_intron ENSMUSG00000032292 Nr2e3 ENSMUST00000128060 - NO_TRANSLATION retained_intron ENSMUSG00000032292 Nr2e3 ENSMUST00000130831 - NO_TRANSLATION retained_intron ENSMUSG00000032292 Nr2e3 ENSMUST00000034831 ENSMUSP00000034831 TRANSLATION protein_coding - CCDS23255.1 1 395.0 8.0 5.8 2.5 202.2 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000032292 Nr2e3 ENSMUST00000128108 - NO_TRANSLATION retained_intron ENSMUSG00000032015 Pou2f3 ENSMUST00000176636 ENSMUSP00000135115 TRANSLATION protein_coding - CCDS40596.1 1 431.0 0.0 3.2 9.3 193.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032015 Pou2f3 ENSMUST00000213862 - NO_TRANSLATION retained_intron ENSMUSG00000032015 Pou2f3 ENSMUST00000034513 ENSMUSP00000034513 TRANSLATION protein_coding - - 1 419.0 0.0 3.2 4.0 193.8 0.0 -4,-5 0.5523 - 13.083 MINOR ENSMUSG00000056961 Or8g51 ENSMUST00000071425 ENSMUSP00000071372 TRANSLATION protein_coding - CCDS23023.1 - 315.0 0.0 1.0 2.4 168.0 7.0 -4,-7 0.6369 - 12.405 MINOR ENSMUSG00000056961 Or8g51 ENSMUST00000215612 ENSMUSP00000150936 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 11.4 168.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056961 Or8g51 ENSMUST00000217508 ENSMUSP00000150303 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 11.4 168.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000090710 Pate11 ENSMUST00000165591 ENSMUSP00000129404 TRANSLATION protein_coding - CCDS52765.1 1 99.0 0.0 2.75 0.4 0.0 0.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000025646 Atrip ENSMUST00000159614 ENSMUSP00000124854 TRANSLATION protein_coding start/stop - 3 180.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0267 2 -2.0 MINOR ENSMUSG00000025646 Atrip ENSMUST00000045011 ENSMUSP00000044831 TRANSLATION protein_coding - CCDS23545.1 1 785.0 0.0 6.8 2.2 0.0 0.0 -4,-7 1.0 8 7.0 PRINCIPAL:2 ENSMUSG00000025646 Atrip ENSMUST00000160217 ENSMUSP00000125264 TRANSLATION nonsense_mediated_decay - - 2 585.0 0.0 6.8 0.1 0.0 0.0 -4,-7 0.1439 5 -2.0 MINOR ENSMUSG00000025646 Atrip ENSMUST00000194199 - NO_TRANSLATION retained_intron ENSMUSG00000025646 Atrip ENSMUST00000128062 ENSMUSP00000118499 TRANSLATION protein_coding start - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0138 - -2.0 MINOR ENSMUSG00000025646 Atrip ENSMUST00000160928 - NO_TRANSLATION retained_intron ENSMUSG00000025646 Atrip ENSMUST00000161521 ENSMUSP00000125615 TRANSLATION protein_coding - - 5 758.0 0.0 6.8 0.0 0.0 0.0 -4,-7 0.1675 7 6.0 ALTERNATIVE:2 ENSMUSG00000025646 Atrip ENSMUST00000161163 - NO_TRANSLATION retained_intron ENSMUSG00000025646 Atrip ENSMUST00000161270 - NO_TRANSLATION retained_intron ENSMUSG00000006941 Eif1b ENSMUST00000217553 ENSMUSP00000149825 TRANSLATION protein_coding stop - 3 100.0 0.0 2.33 1.1 99.4 0.0 -4,-5 0.0509 - -2.0 MINOR ENSMUSG00000006941 Eif1b ENSMUST00000007139 ENSMUSP00000007139 TRANSLATION protein_coding - CCDS23628.1 1 113.0 0.0 2.83 36.2 100.4 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032231 Anxa2 ENSMUST00000134907 ENSMUSP00000117979 TRANSLATION protein_coding stop - 5 176.0 5.0 5.25 0.0 163.9 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000032231 Anxa2 ENSMUST00000136282 ENSMUSP00000117855 TRANSLATION protein_coding start - 3 272.0 4.0 6.66 0.0 232.5 0.0 -4,-6 0.0 15 -2.0 MINOR ENSMUSG00000032231 Anxa2 ENSMUST00000143878 - NO_TRANSLATION retained_intron ENSMUSG00000032231 Anxa2 ENSMUST00000123470 ENSMUSP00000122175 TRANSLATION protein_coding stop - 5 196.0 5.0 6.0 0.0 163.9 0.0 -4,-5 0.0 16 -2.0 MINOR ENSMUSG00000032231 Anxa2 ENSMUST00000154591 - NO_TRANSLATION retained_intron ENSMUSG00000032231 Anxa2 ENSMUST00000034756 ENSMUSP00000034756 TRANSLATION protein_coding - CCDS23316.1 1 339.0 9.0 10.0 36.9 314.3 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000032120 C2cd2l ENSMUST00000213298 - NO_TRANSLATION retained_intron ENSMUSG00000032120 C2cd2l ENSMUST00000213689 - NO_TRANSLATION retained_intron ENSMUSG00000032120 C2cd2l ENSMUST00000216222 ENSMUSP00000149342 TRANSLATION nonsense_mediated_decay start - 1 361.0 0.0 2.28 0.0 0.0 0.0 -4,-5 0.0095 8 -2.0 MINOR ENSMUSG00000032120 C2cd2l ENSMUST00000214915 - NO_TRANSLATION retained_intron ENSMUSG00000032120 C2cd2l ENSMUST00000213160 ENSMUSP00000149989 TRANSLATION protein_coding start - 3 212.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0189 5 -2.0 MINOR ENSMUSG00000032120 C2cd2l ENSMUST00000065080 ENSMUSP00000065233 TRANSLATION protein_coding - CCDS23103.1 1 706.0 0.0 2.68 10.0 0.0 1.0 -2,-5 1.0 16 9.0 PRINCIPAL:1 ENSMUSG00000032120 C2cd2l ENSMUST00000214602 ENSMUSP00000149180 TRANSLATION protein_coding - - 1 654.0 0.0 2.68 0.0 0.0 1.0 -2,-5 0.0708 15 6.0 MINOR ENSMUSG00000032120 C2cd2l ENSMUST00000213818 - NO_TRANSLATION retained_intron ENSMUSG00000032120 C2cd2l ENSMUST00000216855 - NO_TRANSLATION retained_intron ENSMUSG00000052911 Lamb2 ENSMUST00000194421 - NO_TRANSLATION retained_intron ENSMUSG00000052911 Lamb2 ENSMUST00000194147 ENSMUSP00000141562 TRANSLATION protein_coding stop - 5 105.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000052911 Lamb2 ENSMUST00000191864 - NO_TRANSLATION retained_intron ENSMUSG00000052911 Lamb2 ENSMUST00000193301 - NO_TRANSLATION retained_intron ENSMUSG00000052911 Lamb2 ENSMUST00000195058 ENSMUSP00000141757 TRANSLATION protein_coding stop - 5 102.0 3.0 2.05 0.0 49.4 0.0 -1,-4 0.0005 1 -2.0 MINOR ENSMUSG00000052911 Lamb2 ENSMUST00000065014 ENSMUSP00000069087 TRANSLATION protein_coding - CCDS23528.1 1 1799.0 3.0 19.428 8.1 701.6 0.0 -1,-5 1.0 58 18.0 PRINCIPAL:1 ENSMUSG00000052911 Lamb2 ENSMUST00000195483 ENSMUSP00000142304 TRANSLATION protein_coding stop - 2 124.0 3.0 2.65 0.0 55.6 0.0 -1,-5 0.0005 2 -2.0 MINOR ENSMUSG00000059366 Or10d1 ENSMUST00000216298 ENSMUSP00000150349 TRANSLATION protein_coding - CCDS23051.1 5 311.0 0.0 1.0 0.0 165.8 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059366 Or10d1 ENSMUST00000215194 ENSMUSP00000150481 TRANSLATION protein_coding - CCDS23051.1 5 311.0 0.0 1.0 0.0 165.8 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059366 Or10d1 ENSMUST00000079178 ENSMUSP00000078176 TRANSLATION protein_coding - CCDS23051.1 - 311.0 0.0 1.0 0.0 165.8 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000053716 Dusp7 ENSMUST00000173051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053716 Dusp7 ENSMUST00000172306 ENSMUSP00000126984 TRANSLATION protein_coding - CCDS23475.2 1 422.0 9.0 3.1 7.6 184.3 0.0 -2,1 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000053716 Dusp7 ENSMUST00000193878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053716 Dusp7 ENSMUST00000173748 ENSMUSP00000133511 TRANSLATION protein_coding start/stop - 3 220.0 9.0 2.24 0.0 129.5 0.0 -4,-6 0.0001 2 -2.0 MINOR ENSMUSG00000032285 Dnaja4 ENSMUST00000070070 ENSMUSP00000070413 TRANSLATION protein_coding - CCDS23193.1 1 397.0 8.0 5.77 33.9 299.7 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000032285 Dnaja4 ENSMUST00000120452 ENSMUSP00000112520 TRANSLATION protein_coding - CCDS23193.1 1 397.0 8.0 5.77 33.9 299.7 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000032285 Dnaja4 ENSMUST00000154690 ENSMUSP00000119602 TRANSLATION protein_coding stop - 5 207.0 8.0 3.6 0.0 152.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000032504 Pdcd6ip ENSMUST00000142256 - NO_TRANSLATION retained_intron ENSMUSG00000032504 Pdcd6ip ENSMUST00000156425 - NO_TRANSLATION retained_intron ENSMUSG00000032504 Pdcd6ip ENSMUST00000137104 - NO_TRANSLATION retained_intron ENSMUSG00000032504 Pdcd6ip ENSMUST00000135545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032504 Pdcd6ip ENSMUST00000111861 ENSMUSP00000107492 TRANSLATION protein_coding - CCDS52947.1 1 874.0 0.0 14.25 7.7 378.0 0.0 -4,-5 0.9788 35 10.0 PRINCIPAL:3 ENSMUSG00000032504 Pdcd6ip ENSMUST00000035086 ENSMUSP00000035086 TRANSLATION protein_coding - CCDS23588.1 1 869.0 0.0 14.25 7.7 381.0 0.0 -4,-5 1.0 34 9.0 ALTERNATIVE:1 ENSMUSG00000025232 Hexa ENSMUST00000026262 ENSMUSP00000026262 TRANSLATION protein_coding - CCDS23250.1 1 528.0 2.0 12.15 6.9 368.6 0.0 3,-2 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000070324 Fbxw22 ENSMUST00000080626 ENSMUSP00000079460 TRANSLATION protein_coding - CCDS40772.1 1 466.0 0.0 0.91 0.1 40.9 0.0 -4,-7 0.9958 - 11.46 PRINCIPAL:1 ENSMUSG00000070324 Fbxw22 ENSMUST00000197213 ENSMUSP00000142792 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 1.0 0.0 40.5 0.0 -4,-7 0.085 - -2.0 MINOR ENSMUSG00000004661 Arid3b ENSMUST00000004780 ENSMUSP00000004780 TRANSLATION protein_coding - CCDS23233.1 1 568.0 0.0 3.08 0.0 70.4 0.0 -4,-7 0.3717 1 8.0 ALTERNATIVE:2 ENSMUSG00000004661 Arid3b ENSMUST00000167670 - NO_TRANSLATION retained_intron ENSMUSG00000004661 Arid3b ENSMUST00000164010 ENSMUSP00000126889 TRANSLATION protein_coding - - 5 240.0 0.0 0.896 0.0 0.0 0.0 -4,-7 0.0 - 1.632 MINOR ENSMUSG00000004661 Arid3b ENSMUST00000114165 ENSMUSP00000109802 TRANSLATION nonsense_mediated_decay - - 5 212.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000004661 Arid3b ENSMUST00000169563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004661 Arid3b ENSMUST00000171444 ENSMUSP00000130173 TRANSLATION protein_coding - CCDS23233.1 5 568.0 0.0 3.08 0.0 70.4 0.0 -4,-7 0.3717 1 8.0 ALTERNATIVE:2 ENSMUSG00000004661 Arid3b ENSMUST00000098686 ENSMUSP00000096283 TRANSLATION protein_coding - - 1 536.0 0.0 3.08 0.0 70.4 0.0 -4,-7 0.7591 1 8.0 PRINCIPAL:2 ENSMUSG00000004661 Arid3b ENSMUST00000171949 ENSMUSP00000127525 TRANSLATION protein_coding start - 2 94.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000004661 Arid3b ENSMUST00000164035 ENSMUSP00000131677 TRANSLATION nonsense_mediated_decay - - 1 287.0 0.0 0.99 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000004661 Arid3b ENSMUST00000170477 ENSMUSP00000130902 TRANSLATION protein_coding stop - 3 35.0 2.0 0.0 0.0 0.0 0.0 -4,-2 0.0025 - -2.0 MINOR ENSMUSG00000044791 Setd2 ENSMUST00000196814 ENSMUSP00000143774 TRANSLATION nonsense_mediated_decay start - 5 1263.0 10.0 2.264 0.0 0.0 0.0 -4,-5 0.0189 12 -2.0 MINOR ENSMUSG00000044791 Setd2 ENSMUST00000153838 ENSMUSP00000116313 TRANSLATION protein_coding - CCDS40781.2 5 2537.0 25.0 10.964 0.0 212.9 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000044791 Setd2 ENSMUST00000197399 ENSMUSP00000142572 TRANSLATION nonsense_mediated_decay start - 5 72.0 0.0 1.8 0.0 49.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044791 Setd2 ENSMUST00000198587 - NO_TRANSLATION retained_intron ENSMUSG00000044791 Setd2 ENSMUST00000197655 ENSMUSP00000142933 TRANSLATION nonsense_mediated_decay start - 5 169.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044791 Setd2 ENSMUST00000197260 - NO_TRANSLATION retained_intron ENSMUSG00000044791 Setd2 ENSMUST00000195911 - NO_TRANSLATION retained_intron ENSMUSG00000044791 Setd2 ENSMUST00000198823 ENSMUSP00000142553 TRANSLATION protein_coding start/stop - 3 238.0 19.0 4.514 0.0 54.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000044791 Setd2 ENSMUST00000200460 ENSMUSP00000142960 TRANSLATION protein_coding start - 1 760.0 0.0 4.95 0.0 145.5 0.0 -4,-5 0.0055 2 -2.0 MINOR ENSMUSG00000044791 Setd2 ENSMUST00000198697 - NO_TRANSLATION retained_intron ENSMUSG00000019659 Ccdc12 ENSMUST00000199687 - NO_TRANSLATION retained_intron ENSMUSG00000019659 Ccdc12 ENSMUST00000196542 - NO_TRANSLATION retained_intron ENSMUSG00000019659 Ccdc12 ENSMUST00000019803 ENSMUSP00000019803 TRANSLATION protein_coding - CCDS23570.1 1 166.0 0.0 0.0 10.5 132.2 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000019659 Ccdc12 ENSMUST00000195979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019659 Ccdc12 ENSMUST00000196347 ENSMUSP00000142985 TRANSLATION protein_coding stop - 5 142.0 0.0 0.0 0.0 125.1 0.0 -4,-7 0.0058 - -2.0 MINOR ENSMUSG00000019659 Ccdc12 ENSMUST00000198077 - NO_TRANSLATION retained_intron ENSMUSG00000019659 Ccdc12 ENSMUST00000200296 ENSMUSP00000143208 TRANSLATION protein_coding start - 2 88.0 0.0 0.0 0.0 81.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019659 Ccdc12 ENSMUST00000199611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019659 Ccdc12 ENSMUST00000200550 - NO_TRANSLATION retained_intron ENSMUSG00000019659 Ccdc12 ENSMUST00000196092 - NO_TRANSLATION retained_intron ENSMUSG00000034303 Ccdc15 ENSMUST00000216060 - NO_TRANSLATION retained_intron ENSMUSG00000034303 Ccdc15 ENSMUST00000217238 ENSMUSP00000149429 TRANSLATION protein_coding - - 1 189.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5703 2 0.0 ALTERNATIVE:2 ENSMUSG00000034303 Ccdc15 ENSMUST00000216042 ENSMUSP00000150095 TRANSLATION protein_coding - - 1 189.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5703 2 0.0 ALTERNATIVE:2 ENSMUSG00000034303 Ccdc15 ENSMUST00000215116 ENSMUSP00000149806 TRANSLATION nonsense_mediated_decay - - 5 126.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0151 2 -2.0 MINOR ENSMUSG00000034303 Ccdc15 ENSMUST00000213633 ENSMUSP00000150207 TRANSLATION protein_coding - - 5 810.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1993 3 0.0 ALTERNATIVE:2 ENSMUSG00000034303 Ccdc15 ENSMUST00000239439 ENSMUSP00000159312 TRANSLATION protein_coding - - - 810.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1993 3 0.0 ALTERNATIVE:2 ENSMUSG00000034303 Ccdc15 ENSMUST00000037275 ENSMUSP00000036784 TRANSLATION protein_coding - CCDS40584.1 1 823.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.3926 3 0.0 PRINCIPAL:3 ENSMUSG00000038086 Hspb2 ENSMUST00000042790 ENSMUSP00000042374 TRANSLATION protein_coding - CCDS23171.1 1 182.0 0.0 2.5 4.1 85.8 0.0 -4,-6 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000038086 Hspb2 ENSMUST00000217159 ENSMUSP00000148970 TRANSLATION protein_coding - - 1 88.0 0.0 1.5 0.1 0.0 0.0 -4,-5 0.0014 2 3.6 MINOR ENSMUSG00000032580 Rbm5 ENSMUST00000182022 ENSMUSP00000138390 TRANSLATION protein_coding stop - 5 137.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032580 Rbm5 ENSMUST00000183307 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000183248 ENSMUSP00000138294 TRANSLATION protein_coding stop - 5 115.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032580 Rbm5 ENSMUST00000182659 ENSMUSP00000138379 TRANSLATION protein_coding - CCDS23506.1 1 815.0 7.0 8.66 12.5 139.0 0.0 -4,-6 1.0 17 17.0 PRINCIPAL:4 ENSMUSG00000032580 Rbm5 ENSMUST00000182518 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000182007 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000194682 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000182422 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000182836 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000192130 ENSMUSP00000142194 TRANSLATION nonsense_mediated_decay - - 3 150.0 0.0 0.56 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032580 Rbm5 ENSMUST00000035199 ENSMUSP00000035199 TRANSLATION protein_coding - - 5 814.0 7.0 8.41 12.5 139.0 0.0 -4,-6 0.8507 17 16.502 ALTERNATIVE:1 ENSMUSG00000032580 Rbm5 ENSMUST00000194801 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000182792 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000182856 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000182073 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000181993 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000182026 ENSMUSP00000138526 TRANSLATION protein_coding start - 2 154.0 3.0 0.0 0.0 60.6 0.0 -4,-2 0.0004 5 -2.0 MINOR ENSMUSG00000032580 Rbm5 ENSMUST00000194400 ENSMUSP00000142324 TRANSLATION protein_coding start - 3 101.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032580 Rbm5 ENSMUST00000182421 ENSMUSP00000138778 TRANSLATION nonsense_mediated_decay - - 1 115.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032580 Rbm5 ENSMUST00000182371 ENSMUSP00000138119 TRANSLATION nonsense_mediated_decay - - 1 150.0 0.0 0.56 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032580 Rbm5 ENSMUST00000193342 ENSMUSP00000141829 TRANSLATION nonsense_mediated_decay start - 3 175.0 0.0 2.21 0.0 35.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032580 Rbm5 ENSMUST00000182304 ENSMUSP00000138380 TRANSLATION protein_coding stop - 3 251.0 4.0 3.94 0.0 74.7 0.0 -4,-6 0.0003 2 -2.0 MINOR ENSMUSG00000032580 Rbm5 ENSMUST00000182332 - NO_TRANSLATION retained_intron ENSMUSG00000032580 Rbm5 ENSMUST00000182215 - NO_TRANSLATION retained_intron ENSMUSG00000032216 Nedd4 ENSMUST00000183451 - NO_TRANSLATION retained_intron ENSMUSG00000032216 Nedd4 ENSMUST00000238315 ENSMUSP00000158796 TRANSLATION protein_coding - - - 1136.0 0.0 14.36 0.0 466.6 0.0 -4,-2 0.043 20 1.518 MINOR ENSMUSG00000032216 Nedd4 ENSMUST00000183375 ENSMUSP00000138852 TRANSLATION protein_coding stop - 3 196.0 3.0 4.08 0.0 43.3 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032216 Nedd4 ENSMUST00000184020 ENSMUSP00000139297 TRANSLATION nonsense_mediated_decay start - 3 30.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032216 Nedd4 ENSMUST00000184737 - NO_TRANSLATION retained_intron ENSMUSG00000032216 Nedd4 ENSMUST00000184287 - NO_TRANSLATION retained_intron ENSMUSG00000032216 Nedd4 ENSMUST00000184180 - NO_TRANSLATION retained_intron ENSMUSG00000032216 Nedd4 ENSMUST00000184450 ENSMUSP00000138983 TRANSLATION protein_coding - - 1 305.0 9.0 5.88 0.0 119.2 0.0 -4,-5 0.0017 6 6.0 MINOR ENSMUSG00000032216 Nedd4 ENSMUST00000238368 ENSMUSP00000158642 TRANSLATION nonsense_mediated_decay - - - 496.0 9.0 6.58 0.0 162.9 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000032216 Nedd4 ENSMUST00000034740 ENSMUSP00000034740 TRANSLATION protein_coding - CCDS72275.1 1 887.0 9.0 18.94 0.1 541.3 0.0 -4,-5 1.0 25 18.0 PRINCIPAL:1 ENSMUSG00000032216 Nedd4 ENSMUST00000184333 ENSMUSP00000139190 TRANSLATION protein_coding - - 1 195.0 7.0 4.8 0.0 97.4 0.0 -4,-6 0.0006 3 4.668 MINOR ENSMUSG00000032216 Nedd4 ENSMUST00000184386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042254 Cilp ENSMUST00000141382 ENSMUSP00000121326 TRANSLATION nonsense_mediated_decay - - 5 74.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0014 - -2.0 MINOR ENSMUSG00000042254 Cilp ENSMUST00000048762 ENSMUSP00000036631 TRANSLATION protein_coding - CCDS23287.1 1 1250.0 0.0 2.9 0.0 155.9 0.0 4,-1 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000032318 Isl2 ENSMUST00000164373 ENSMUSP00000130638 TRANSLATION nonsense_mediated_decay - - 1 174.0 8.0 1.066 0.0 50.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032318 Isl2 ENSMUST00000175950 ENSMUSP00000139485 TRANSLATION protein_coding stop - 3 151.0 15.0 2.2 0.0 105.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032318 Isl2 ENSMUST00000034869 ENSMUSP00000034869 TRANSLATION protein_coding - CCDS23205.1 1 359.0 16.0 3.4 25.1 163.1 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000032318 Isl2 ENSMUST00000114290 ENSMUSP00000109929 TRANSLATION nonsense_mediated_decay - - 1 174.0 8.0 1.066 0.0 50.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032318 Isl2 ENSMUST00000165302 - NO_TRANSLATION retained_intron ENSMUSG00000032595 Cdhr4 ENSMUST00000177226 - NO_TRANSLATION retained_intron ENSMUSG00000032595 Cdhr4 ENSMUST00000177516 - NO_TRANSLATION retained_intron ENSMUSG00000032595 Cdhr4 ENSMUST00000035215 - NO_TRANSLATION retained_intron ENSMUSG00000032595 Cdhr4 ENSMUST00000176334 ENSMUSP00000135366 TRANSLATION protein_coding start - 3 182.0 0.0 1.295 0.0 0.0 2.0 -4,-1 0.0025 1 -2.0 MINOR ENSMUSG00000032595 Cdhr4 ENSMUST00000175802 ENSMUSP00000135003 TRANSLATION protein_coding start - 3 137.0 9.0 1.245 0.0 53.5 0.0 -4,-6 0.0304 - -2.0 MINOR ENSMUSG00000032595 Cdhr4 ENSMUST00000177173 ENSMUSP00000135184 TRANSLATION protein_coding - - 5 783.0 19.0 6.555 1.0 53.5 2.0 4,-1 0.8419 1 18.0 PRINCIPAL:1 ENSMUSG00000032595 Cdhr4 ENSMUST00000176183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032595 Cdhr4 ENSMUST00000177508 ENSMUSP00000135332 TRANSLATION protein_coding start - 2 155.0 0.0 0.645 0.0 0.0 2.0 -4,-6 0.0025 - -2.0 MINOR ENSMUSG00000032595 Cdhr4 ENSMUST00000177093 - NO_TRANSLATION retained_intron ENSMUSG00000032595 Cdhr4 ENSMUST00000176196 - NO_TRANSLATION retained_intron ENSMUSG00000032595 Cdhr4 ENSMUST00000175759 ENSMUSP00000135743 TRANSLATION protein_coding start - 5 220.0 5.0 1.765 0.0 0.0 2.0 -4,-7 0.0009 - -2.0 MINOR ENSMUSG00000032595 Cdhr4 ENSMUST00000176306 ENSMUSP00000135198 TRANSLATION nonsense_mediated_decay start - 5 42.0 1.0 0.45 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000032595 Cdhr4 ENSMUST00000176373 ENSMUSP00000134896 TRANSLATION protein_coding - - 5 93.0 0.0 0.165 0.0 0.0 2.0 -4,-5 0.0025 - 0.0 MINOR ENSMUSG00000032595 Cdhr4 ENSMUST00000176919 - NO_TRANSLATION retained_intron ENSMUSG00000032454 Rbp2 ENSMUST00000035029 ENSMUSP00000035029 TRANSLATION protein_coding - CCDS23425.1 1 134.0 14.0 3.25 36.9 73.5 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000032454 Rbp2 ENSMUST00000187905 ENSMUSP00000140630 TRANSLATION protein_coding - CCDS23425.1 3 134.0 14.0 3.25 36.9 73.5 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000032454 Rbp2 ENSMUST00000188779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032454 Rbp2 ENSMUST00000189446 ENSMUSP00000140676 TRANSLATION protein_coding - CCDS23425.1 3 134.0 14.0 3.25 36.9 73.5 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000079323 Gm20661 ENSMUST00000176166 - NO_TRANSLATION retained_intron ENSMUSG00000079323 Gm20661 ENSMUST00000177368 ENSMUSP00000135553 TRANSLATION nonsense_mediated_decay,RT - - 2 53.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - -2.0 PRINCIPAL:1 ENSMUSG00000079323 Gm20661 ENSMUST00000176382 - NO_TRANSLATION retained_intron ENSMUSG00000000167 Pih1d2 ENSMUST00000132187 ENSMUSP00000118064 TRANSLATION nonsense_mediated_decay - - 1 114.0 0.0 0.3 0.0 27.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000167 Pih1d2 ENSMUST00000151197 ENSMUSP00000119253 TRANSLATION protein_coding stop - 5 235.0 0.0 0.8125 0.0 61.5 0.0 -4,-7 0.0025 - -2.0 MINOR ENSMUSG00000000167 Pih1d2 ENSMUST00000141366 ENSMUSP00000122789 TRANSLATION protein_coding stop - 3 198.0 0.0 0.8125 0.0 60.0 0.0 -4,-7 0.0022 - -2.0 MINOR ENSMUSG00000000167 Pih1d2 ENSMUST00000155773 - NO_TRANSLATION retained_intron ENSMUSG00000000167 Pih1d2 ENSMUST00000000171 ENSMUSP00000000171 TRANSLATION protein_coding - CCDS23167.1 1 315.0 0.0 0.8125 12.5 97.0 0.0 -4,-7 1.0 - 14.652 PRINCIPAL:1 ENSMUSG00000000167 Pih1d2 ENSMUST00000125606 ENSMUSP00000121100 TRANSLATION protein_coding stop - 2 140.0 0.0 0.8625 0.0 50.8 0.0 -4,-7 0.0207 - -2.0 MINOR ENSMUSG00000000167 Pih1d2 ENSMUST00000124029 - NO_TRANSLATION retained_intron ENSMUSG00000057969 Sema3b ENSMUST00000194433 ENSMUSP00000141403 TRANSLATION protein_coding stop - 2 172.0 0.0 3.61 0.0 116.4 0.0 1,-3 0.0008 1 -2.0 MINOR ENSMUSG00000057969 Sema3b ENSMUST00000195472 - NO_TRANSLATION retained_intron ENSMUSG00000057969 Sema3b ENSMUST00000102529 ENSMUSP00000099588 TRANSLATION protein_coding - CCDS23501.1 1 749.0 0.0 12.688 9.2 540.6 0.0 1,-3 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000057969 Sema3b ENSMUST00000194606 ENSMUSP00000141928 TRANSLATION protein_coding stop - 3 48.0 0.0 0.54 0.0 0.0 0.0 1,-3 0.0015 - -2.0 MINOR ENSMUSG00000057969 Sema3b ENSMUST00000193180 ENSMUSP00000141726 TRANSLATION protein_coding stop - 3 147.0 0.0 3.01 0.0 103.7 0.0 1,-3 0.0008 1 -2.0 MINOR ENSMUSG00000057969 Sema3b ENSMUST00000102531 ENSMUSP00000099590 TRANSLATION protein_coding - CCDS23501.1 1 749.0 0.0 12.688 9.2 540.6 0.0 1,-3 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000057969 Sema3b ENSMUST00000195662 ENSMUSP00000141614 TRANSLATION protein_coding stop - 3 137.0 0.0 2.68 0.0 90.5 0.0 1,-3 0.0008 1 -2.0 MINOR ENSMUSG00000057969 Sema3b ENSMUST00000073448 ENSMUSP00000073152 TRANSLATION protein_coding - CCDS23501.1 1 749.0 0.0 12.688 9.2 540.6 0.0 1,-3 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000057969 Sema3b ENSMUST00000195057 ENSMUSP00000141390 TRANSLATION protein_coding stop - 3 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0112 - -2.0 MINOR ENSMUSG00000057969 Sema3b ENSMUST00000193551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057969 Sema3b ENSMUST00000123926 ENSMUSP00000137952 TRANSLATION nonsense_mediated_decay - - 1 534.0 0.0 10.374 0.0 516.0 0.0 1,-3 0.0176 1 -2.0 MINOR ENSMUSG00000057969 Sema3b ENSMUST00000102532 ENSMUSP00000099591 TRANSLATION protein_coding - CCDS23501.1 1 749.0 0.0 12.688 9.2 540.6 0.0 1,-3 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000057969 Sema3b ENSMUST00000193234 - NO_TRANSLATION retained_intron ENSMUSG00000057969 Sema3b ENSMUST00000102530 ENSMUSP00000099589 TRANSLATION protein_coding - CCDS23501.1 5 749.0 0.0 12.688 9.2 540.6 0.0 1,-3 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000032021 Crtam ENSMUST00000034519 ENSMUSP00000034519 TRANSLATION protein_coding - - 5 386.0 0.0 3.0 4.9 89.6 2.0 4,-1 0.9891 - 10.0 ALTERNATIVE:1 ENSMUSG00000032021 Crtam ENSMUST00000180384 ENSMUSP00000137837 TRANSLATION protein_coding - CCDS72216.1 1 393.0 0.0 2.7525 4.9 89.6 2.0 4,-1 1.0 - 9.502 PRINCIPAL:4 ENSMUSG00000032021 Crtam ENSMUST00000180872 ENSMUSP00000137749 TRANSLATION protein_coding - - 1 196.0 0.0 0.3 3.0 0.0 2.0 -2,-4 0.3277 - 1.626 MINOR ENSMUSG00000032021 Crtam ENSMUST00000188848 ENSMUSP00000139826 TRANSLATION protein_coding - CCDS40593.2 1 392.0 0.0 2.7525 2.9 89.6 2.0 4,-1 0.8574 - 8.476 MINOR ENSMUSG00000032289 Thsd4 ENSMUST00000140824 ENSMUSP00000123323 TRANSLATION protein_coding stop - 3 134.0 0.0 0.2 0.0 21.8 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000032289 Thsd4 ENSMUST00000146099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032289 Thsd4 ENSMUST00000171654 ENSMUSP00000131418 TRANSLATION protein_coding - CCDS40661.1 5 1018.0 3.0 2.32 0.4 294.7 0.0 3,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000032289 Thsd4 ENSMUST00000126347 - NO_TRANSLATION retained_intron ENSMUSG00000032289 Thsd4 ENSMUST00000034829 ENSMUSP00000034829 TRANSLATION protein_coding - CCDS23256.1 1 658.0 3.0 0.84 5.3 272.9 0.0 1,-3 0.8548 8 11.864 MINOR ENSMUSG00000032289 Thsd4 ENSMUST00000098660 ENSMUSP00000096257 TRANSLATION protein_coding - CCDS40661.1 1 1018.0 3.0 2.32 0.4 294.7 0.0 3,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000033392 Clasp2 ENSMUST00000216817 ENSMUSP00000150741 TRANSLATION protein_coding - - 1 400.0 0.0 7.73 0.1 36.5 0.0 -4,-5 0.0025 10 0.0 MINOR ENSMUSG00000033392 Clasp2 ENSMUST00000166734 ENSMUSP00000130201 TRANSLATION protein_coding - CCDS40787.1 5 1287.0 0.0 15.48 6.4 134.0 0.0 -4,-5 0.9998 42 10.0 ALTERNATIVE:1 ENSMUSG00000033392 Clasp2 ENSMUST00000214860 - NO_TRANSLATION retained_intron ENSMUSG00000033392 Clasp2 ENSMUST00000213663 ENSMUSP00000150145 TRANSLATION protein_coding - - 5 600.0 0.0 11.08 0.0 36.5 0.0 -4,-5 0.0002 14 0.0 MINOR ENSMUSG00000033392 Clasp2 ENSMUST00000111838 ENSMUSP00000107469 TRANSLATION protein_coding - CCDS52948.1 1 1286.0 0.0 15.48 6.4 134.0 0.0 -4,-5 1.0 42 10.0 PRINCIPAL:4 ENSMUSG00000033392 Clasp2 ENSMUST00000213902 - NO_TRANSLATION retained_intron ENSMUSG00000033392 Clasp2 ENSMUST00000215022 ENSMUSP00000149685 TRANSLATION nonsense_mediated_decay - - 5 103.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000033392 Clasp2 ENSMUST00000214522 ENSMUSP00000149670 TRANSLATION protein_coding - - 1 1304.0 0.0 15.48 5.3 134.0 0.0 -4,-5 0.7621 41 9.592 ALTERNATIVE:1 ENSMUSG00000033392 Clasp2 ENSMUST00000163895 ENSMUSP00000128460 TRANSLATION protein_coding - - 5 1307.0 0.0 15.48 6.4 134.0 0.0 -4,-5 0.7843 42 10.0 ALTERNATIVE:1 ENSMUSG00000033392 Clasp2 ENSMUST00000216280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033392 Clasp2 ENSMUST00000213966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015656 Hspa8 ENSMUST00000117557 ENSMUSP00000113722 TRANSLATION protein_coding - - 1 627.0 20.0 8.35 0.0 800.0 0.0 -4,-5 0.0665 29 12.366 MINOR ENSMUSG00000015656 Hspa8 ENSMUST00000117870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015656 Hspa8 ENSMUST00000153847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015656 Hspa8 ENSMUST00000133964 ENSMUSP00000117285 TRANSLATION protein_coding stop - 2 116.0 6.0 2.0 3.0 154.2 0.0 -4,-5 0.03 9 -2.0 MINOR ENSMUSG00000015656 Hspa8 ENSMUST00000149936 - NO_TRANSLATION retained_intron ENSMUSG00000015656 Hspa8 ENSMUST00000127699 - NO_TRANSLATION retained_intron ENSMUSG00000015656 Hspa8 ENSMUST00000215526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015656 Hspa8 ENSMUST00000140984 - NO_TRANSLATION retained_intron ENSMUSG00000015656 Hspa8 ENSMUST00000015800 ENSMUSP00000015800 TRANSLATION protein_coding - CCDS23083.1 1 646.0 20.0 8.85 33.9 877.2 0.0 -4,-5 1.0 31 22.0 PRINCIPAL:1 ENSMUSG00000015656 Hspa8 ENSMUST00000138895 - NO_TRANSLATION retained_intron ENSMUSG00000031931 Ankrd49 ENSMUST00000216372 ENSMUSP00000151079 TRANSLATION protein_coding - CCDS22826.1 1 238.0 0.0 1.6 11.2 68.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000031931 Ankrd49 ENSMUST00000034406 ENSMUSP00000034406 TRANSLATION protein_coding - CCDS22826.1 1 238.0 0.0 1.6 11.2 68.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000031931 Ankrd49 ENSMUST00000216037 ENSMUSP00000149874 TRANSLATION protein_coding - CCDS22826.1 2 238.0 0.0 1.6 11.2 68.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000031931 Ankrd49 ENSMUST00000214979 ENSMUSP00000150762 TRANSLATION protein_coding stop - 3 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031931 Ankrd49 ENSMUST00000214882 - NO_TRANSLATION retained_intron ENSMUSG00000031931 Ankrd49 ENSMUST00000214456 ENSMUSP00000152731 TRANSLATION protein_coding - - 1 120.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - 2.25 MINOR ENSMUSG00000033419 Snap91 ENSMUST00000190089 - NO_TRANSLATION retained_intron ENSMUSG00000033419 Snap91 ENSMUST00000098495 ENSMUSP00000096096 TRANSLATION protein_coding - CCDS72289.1 1 838.0 4.0 8.0 0.1 282.9 0.0 -4,-6 0.3671 21 12.0 ALTERNATIVE:2 ENSMUSG00000033419 Snap91 ENSMUST00000190388 - NO_TRANSLATION retained_intron ENSMUSG00000033419 Snap91 ENSMUST00000167014 - NO_TRANSLATION retained_intron ENSMUSG00000033419 Snap91 ENSMUST00000189004 - NO_TRANSLATION retained_intron ENSMUSG00000033419 Snap91 ENSMUST00000074501 ENSMUSP00000074095 TRANSLATION protein_coding - CCDS72288.1 1 582.0 4.0 8.0 0.7 282.9 0.0 -4,-6 0.4309 17 12.0 ALTERNATIVE:2 ENSMUSG00000033419 Snap91 ENSMUST00000036347 ENSMUSP00000046189 TRANSLATION protein_coding - - 5 868.0 4.0 8.0 0.1 282.9 0.0 -4,-6 0.2068 21 12.0 ALTERNATIVE:2 ENSMUSG00000033419 Snap91 ENSMUST00000189762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033419 Snap91 ENSMUST00000239074 ENSMUSP00000159021 TRANSLATION protein_coding - - - 894.0 4.0 8.0 1.5 282.9 0.0 -4,-6 0.5248 21 12.263 ALTERNATIVE:2 ENSMUSG00000033419 Snap91 ENSMUST00000074468 ENSMUSP00000074066 TRANSLATION protein_coding - - 5 901.0 4.0 8.0 2.9 282.9 0.0 -4,-6 1.0 21 13.0 PRINCIPAL:2 ENSMUSG00000033419 Snap91 ENSMUST00000191290 ENSMUSP00000141065 TRANSLATION protein_coding stop - 5 219.0 4.0 5.75 0.0 204.2 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000032258 Lca5 ENSMUST00000190557 - NO_TRANSLATION retained_intron ENSMUSG00000032258 Lca5 ENSMUST00000191225 - NO_TRANSLATION retained_intron ENSMUSG00000032258 Lca5 ENSMUST00000188907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032258 Lca5 ENSMUST00000034793 ENSMUSP00000034793 TRANSLATION protein_coding - CCDS23373.1 1 419.0 0.0 2.7 0.1 215.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000032258 Lca5 ENSMUST00000188548 ENSMUSP00000140334 TRANSLATION protein_coding stop - 2 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032258 Lca5 ENSMUST00000186802 ENSMUSP00000139529 TRANSLATION protein_coding stop - 2 176.0 0.0 0.5 0.0 98.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032258 Lca5 ENSMUST00000034791 ENSMUSP00000034791 TRANSLATION protein_coding - CCDS23374.1 1 704.0 0.0 2.7 0.0 215.0 0.0 -4,-5 0.3571 5 8.0 ALTERNATIVE:2 ENSMUSG00000032258 Lca5 ENSMUST00000190373 - NO_TRANSLATION retained_intron ENSMUSG00000032258 Lca5 ENSMUST00000190514 ENSMUSP00000140753 TRANSLATION nonsense_mediated_decay - - 5 453.0 0.0 2.7 0.0 215.0 0.0 -4,-5 0.0462 2 -2.0 MINOR ENSMUSG00000032530 Lyzl4 ENSMUST00000125075 ENSMUSP00000115284 TRANSLATION protein_coding stop - 3 91.0 0.0 2.0 0.0 59.7 0.0 3,-2 0.001 - -2.0 MINOR ENSMUSG00000032530 Lyzl4 ENSMUST00000214592 ENSMUSP00000150807 TRANSLATION protein_coding stop - 5 90.0 0.0 2.0 0.0 59.6 0.0 3,-2 0.001 - -2.0 MINOR ENSMUSG00000032530 Lyzl4 ENSMUST00000077706 ENSMUSP00000076887 TRANSLATION protein_coding - CCDS23632.1 1 145.0 4.0 3.91 7.7 109.2 0.0 3,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000032530 Lyzl4 ENSMUST00000213757 ENSMUSP00000151031 TRANSLATION protein_coding stop - 5 138.0 4.0 3.58 0.0 106.7 0.0 3,-2 0.0423 2 -2.0 MINOR ENSMUSG00000032530 Lyzl4 ENSMUST00000120918 ENSMUSP00000113034 TRANSLATION protein_coding - CCDS23632.1 1 145.0 4.0 3.91 7.7 109.2 0.0 3,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000090626 Tex9 ENSMUST00000185106 - NO_TRANSLATION retained_intron ENSMUSG00000090626 Tex9 ENSMUST00000085358 ENSMUSP00000082467 TRANSLATION protein_coding - - 1 188.0 0.0 0.0 2.8 0.0 0.0 -4,-5 0.1632 1 0.58 MINOR ENSMUSG00000090626 Tex9 ENSMUST00000184125 ENSMUSP00000139026 TRANSLATION protein_coding - CCDS40685.1 1 387.0 0.0 0.0 7.2 0.0 0.0 -4,-1 1.0 2 2.0 PRINCIPAL:1 ENSMUSG00000090626 Tex9 ENSMUST00000183551 - NO_TRANSLATION retained_intron ENSMUSG00000090626 Tex9 ENSMUST00000184831 ENSMUSP00000138999 TRANSLATION protein_coding - - 5 202.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0153 1 0.0 MINOR ENSMUSG00000090626 Tex9 ENSMUST00000184066 - NO_TRANSLATION retained_intron ENSMUSG00000090626 Tex9 ENSMUST00000184734 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090626 Tex9 ENSMUST00000184624 - NO_TRANSLATION retained_intron ENSMUSG00000090626 Tex9 ENSMUST00000183856 ENSMUSP00000139247 TRANSLATION nonsense_mediated_decay - - 5 332.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0459 2 -2.0 MINOR ENSMUSG00000090626 Tex9 ENSMUST00000184557 ENSMUSP00000139212 TRANSLATION nonsense_mediated_decay - - 1 281.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0392 1 -2.0 MINOR ENSMUSG00000090626 Tex9 ENSMUST00000183574 ENSMUSP00000139386 TRANSLATION protein_coding - - 1 329.0 0.0 0.0 0.7 0.0 0.0 -4,-1 0.1219 2 0.0 MINOR ENSMUSG00000090626 Tex9 ENSMUST00000185151 ENSMUSP00000138929 TRANSLATION protein_coding stop - 2 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0107 - -2.0 MINOR ENSMUSG00000090626 Tex9 ENSMUST00000183501 ENSMUSP00000138882 TRANSLATION protein_coding start/stop - 5 158.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0114 - -2.0 MINOR ENSMUSG00000090626 Tex9 ENSMUST00000184312 ENSMUSP00000138844 TRANSLATION nonsense_mediated_decay - - 1 100.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0241 - -2.0 MINOR ENSMUSG00000090626 Tex9 ENSMUST00000183399 - NO_TRANSLATION retained_intron ENSMUSG00000090626 Tex9 ENSMUST00000183428 ENSMUSP00000139326 TRANSLATION nonsense_mediated_decay start - 5 122.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0107 1 -2.0 MINOR ENSMUSG00000093934 Or8g2b ENSMUST00000214242 ENSMUSP00000148850 TRANSLATION protein_coding - CCDS23063.1 5 307.0 0.0 1.0 11.4 179.7 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093934 Or8g2b ENSMUST00000075467 ENSMUSP00000074913 TRANSLATION protein_coding - CCDS23063.1 - 307.0 0.0 1.0 11.4 179.7 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056131 Pgm3 ENSMUST00000070064 ENSMUSP00000070871 TRANSLATION protein_coding - CCDS23381.1 1 542.0 18.0 10.75 29.9 62.5 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000056131 Pgm3 ENSMUST00000186193 - NO_TRANSLATION retained_intron ENSMUSG00000056131 Pgm3 ENSMUST00000190924 - NO_TRANSLATION retained_intron ENSMUSG00000056131 Pgm3 ENSMUST00000187251 - NO_TRANSLATION retained_intron ENSMUSG00000056131 Pgm3 ENSMUST00000072585 ENSMUSP00000072390 TRANSLATION protein_coding - CCDS52877.1 1 501.0 18.0 9.75 2.0 62.5 0.0 -4,-5 0.1256 20 16.142 MINOR ENSMUSG00000042210 Abhd14a ENSMUST00000187983 ENSMUSP00000140901 TRANSLATION protein_coding stop - 5 196.0 0.0 4.1825 0.0 0.0 0.0 1,-3 0.0124 2 -2.0 MINOR ENSMUSG00000042210 Abhd14a ENSMUST00000171678 ENSMUSP00000126101 TRANSLATION protein_coding - - 1 242.0 0.0 5.43 2.9 29.1 0.0 1,-3 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000042210 Abhd14a ENSMUST00000185334 ENSMUSP00000140345 TRANSLATION protein_coding - - 5 242.0 0.0 5.43 2.9 29.1 0.0 1,-3 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000042210 Abhd14a ENSMUST00000187001 ENSMUSP00000140042 TRANSLATION protein_coding stop - 5 131.0 0.0 2.1025 0.0 0.0 0.0 1,-3 0.0033 1 -2.0 MINOR ENSMUSG00000042210 Abhd14a ENSMUST00000187798 - NO_TRANSLATION retained_intron ENSMUSG00000042210 Abhd14a ENSMUST00000171925 ENSMUSP00000126916 TRANSLATION protein_coding - - 3 260.0 0.0 5.43 0.0 0.0 0.0 1,-3 0.0588 3 6.0 MINOR ENSMUSG00000042210 Abhd14a ENSMUST00000190798 ENSMUSP00000141096 TRANSLATION protein_coding stop - 3 151.0 0.0 3.1 0.0 28.0 0.0 1,-3 0.0232 1 -2.0 MINOR ENSMUSG00000032091 Tmprss4 ENSMUST00000165263 ENSMUSP00000131890 TRANSLATION nonsense_mediated_decay - - 5 335.0 7.0 3.24 0.0 177.0 1.0 -4,-7 0.0003 7 -2.0 MINOR ENSMUSG00000032091 Tmprss4 ENSMUST00000034599 ENSMUSP00000034599 TRANSLATION protein_coding - CCDS40607.1 1 435.0 10.0 5.04 8.9 293.9 1.0 -4,-7 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000032091 Tmprss4 ENSMUST00000163237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032091 Tmprss4 ENSMUST00000170069 ENSMUSP00000131933 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032091 Tmprss4 ENSMUST00000163945 - NO_TRANSLATION retained_intron ENSMUSG00000045322 Tlr9 ENSMUST00000062241 ENSMUSP00000082207 TRANSLATION protein_coding - CCDS40755.1 1 1032.0 0.0 0.8 1.4 137.9 0.0 2,-2 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000032018 Sc5d ENSMUST00000169609 ENSMUSP00000130438 TRANSLATION protein_coding - CCDS23086.1 1 299.0 0.0 5.0 22.7 84.8 4.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032018 Sc5d ENSMUST00000217513 ENSMUSP00000149891 TRANSLATION protein_coding stop - 3 215.0 0.0 4.0 0.0 51.3 4.0 -4,-7 0.0077 - -2.0 MINOR ENSMUSG00000032018 Sc5d ENSMUST00000052725 ENSMUSP00000057354 TRANSLATION protein_coding - CCDS23086.1 1 299.0 0.0 5.0 22.7 84.8 4.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032517 Mobp ENSMUST00000111627 ENSMUSP00000107254 TRANSLATION protein_coding - CCDS40808.1 2 81.0 2.0 0.6 6.0 44.5 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000032517 Mobp ENSMUST00000093773 ENSMUSP00000091287 TRANSLATION protein_coding - CCDS40808.1 1 81.0 2.0 0.6 6.0 44.5 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000032517 Mobp ENSMUST00000068698 ENSMUSP00000071084 TRANSLATION protein_coding - CCDS23626.1 1 170.0 2.0 0.6 0.1 39.4 0.0 -4,-7 0.2205 2 13.31 MINOR ENSMUSG00000032517 Mobp ENSMUST00000214943 ENSMUSP00000149285 TRANSLATION protein_coding - CCDS40808.1 3 81.0 2.0 0.6 6.0 44.5 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000032517 Mobp ENSMUST00000215512 ENSMUSP00000149831 TRANSLATION protein_coding - - 2 69.0 2.0 0.48 0.0 42.9 0.0 -4,-7 0.0289 2 12.584 MINOR ENSMUSG00000032517 Mobp ENSMUST00000214008 - NO_TRANSLATION retained_intron ENSMUSG00000032517 Mobp ENSMUST00000174193 ENSMUSP00000134410 TRANSLATION nonsense_mediated_decay - CCDS40808.1 1 81.0 2.0 0.6 6.0 44.5 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000032109 Nlrx1 ENSMUST00000217465 ENSMUSP00000149124 TRANSLATION protein_coding stop - 3 172.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000032109 Nlrx1 ENSMUST00000213764 - NO_TRANSLATION retained_intron ENSMUSG00000032109 Nlrx1 ENSMUST00000168499 ENSMUSP00000127531 TRANSLATION protein_coding - CCDS23100.1 1 975.0 5.0 3.648 10.6 87.8 0.0 -4,-1 1.0 26 20.0 PRINCIPAL:1 ENSMUSG00000032109 Nlrx1 ENSMUST00000213803 ENSMUSP00000150198 TRANSLATION protein_coding stop - 2 155.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000032109 Nlrx1 ENSMUST00000034621 ENSMUSP00000034621 TRANSLATION protein_coding - CCDS23100.1 1 975.0 5.0 3.648 10.6 87.8 0.0 -4,-1 1.0 26 20.0 PRINCIPAL:1 ENSMUSG00000032109 Nlrx1 ENSMUST00000169651 ENSMUSP00000126555 TRANSLATION protein_coding - CCDS23100.1 1 975.0 5.0 3.648 10.6 87.8 0.0 -4,-1 1.0 26 20.0 PRINCIPAL:1 ENSMUSG00000061701 Fbxw20 ENSMUST00000198261 - NO_TRANSLATION retained_intron ENSMUSG00000061701 Fbxw20 ENSMUST00000197329 ENSMUSP00000143126 TRANSLATION protein_coding stop - 3 272.0 0.0 1.36 0.0 45.4 0.0 -4,-7 0.0639 - -2.0 MINOR ENSMUSG00000061701 Fbxw20 ENSMUST00000079548 ENSMUSP00000078503 TRANSLATION protein_coding - CCDS23549.1 1 468.0 0.0 1.36 0.1 45.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035448 Ccr3 ENSMUST00000039171 ENSMUSP00000039107 TRANSLATION protein_coding - CCDS23668.1 1 359.0 0.0 1.0 5.1 173.1 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094810 Or8b44 ENSMUST00000214003 ENSMUSP00000149897 TRANSLATION protein_coding - CCDS23014.1 3 310.0 0.0 1.0 11.4 156.3 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094810 Or8b44 ENSMUST00000214264 ENSMUSP00000148894 TRANSLATION protein_coding - CCDS23014.1 5 310.0 0.0 1.0 11.4 156.3 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094810 Or8b44 ENSMUST00000052901 ENSMUSP00000051531 TRANSLATION protein_coding - CCDS23014.1 - 310.0 0.0 1.0 11.4 156.3 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032041 Tirap ENSMUST00000176611 ENSMUSP00000134984 TRANSLATION protein_coding stop - 2 120.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032041 Tirap ENSMUST00000177052 ENSMUSP00000135429 TRANSLATION protein_coding stop - 2 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032041 Tirap ENSMUST00000176685 ENSMUSP00000135876 TRANSLATION protein_coding - CCDS40575.2 1 249.0 0.0 2.28 0.1 45.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000032041 Tirap ENSMUST00000176531 ENSMUSP00000135224 TRANSLATION protein_coding - CCDS40575.2 1 249.0 0.0 2.28 0.1 45.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000032041 Tirap ENSMUST00000175765 ENSMUSP00000135435 TRANSLATION protein_coding - CCDS40575.2 1 249.0 0.0 2.28 0.1 45.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000032041 Tirap ENSMUST00000176021 ENSMUSP00000135738 TRANSLATION protein_coding stop - 3 219.0 0.0 1.53 0.0 43.6 0.0 -4,-5 0.0059 3 -2.0 MINOR ENSMUSG00000032041 Tirap ENSMUST00000177129 ENSMUSP00000135462 TRANSLATION protein_coding - CCDS40575.2 1 249.0 0.0 2.28 0.1 45.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000066892 Fbxl12 ENSMUST00000151861 ENSMUSP00000121429 TRANSLATION protein_coding - - 2 349.0 0.0 2.75 0.0 0.0 0.0 -4,-5 0.0 1 4.8 MINOR ENSMUSG00000066892 Fbxl12 ENSMUST00000131343 ENSMUSP00000118873 TRANSLATION protein_coding stop - 3 132.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0004 1 -2.0 MINOR ENSMUSG00000066892 Fbxl12 ENSMUST00000155280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066892 Fbxl12 ENSMUST00000086458 ENSMUSP00000083649 TRANSLATION protein_coding - CCDS22881.1 1 273.0 0.0 2.0 5.3 0.0 0.0 -4,0 0.414 1 5.118 MINOR ENSMUSG00000066892 Fbxl12 ENSMUST00000155301 ENSMUSP00000118369 TRANSLATION protein_coding - - 3 86.0 0.0 1.35 0.0 52.4 0.0 -4,-5 0.0098 - 7.998 MINOR ENSMUSG00000066892 Fbxl12 ENSMUST00000131128 ENSMUSP00000115058 TRANSLATION protein_coding - CCDS22881.1 1 273.0 0.0 2.0 5.3 0.0 0.0 -4,0 0.414 1 5.118 MINOR ENSMUSG00000066892 Fbxl12 ENSMUST00000140702 ENSMUSP00000114466 TRANSLATION protein_coding - CCDS22881.1 - 273.0 0.0 2.0 5.3 0.0 0.0 -4,0 0.414 1 5.118 MINOR ENSMUSG00000066892 Fbxl12 ENSMUST00000153154 - NO_TRANSLATION retained_intron ENSMUSG00000066892 Fbxl12 ENSMUST00000086459 ENSMUSP00000083650 TRANSLATION protein_coding - CCDS22880.1 1 326.0 0.0 3.35 8.1 52.4 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000066892 Fbxl12 ENSMUST00000148631 ENSMUSP00000119124 TRANSLATION protein_coding - CCDS22880.1 1 326.0 0.0 3.35 8.1 52.4 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000055820 Or8g4 ENSMUST00000069561 ENSMUSP00000064201 TRANSLATION protein_coding - CCDS23059.1 - 310.0 0.0 1.0 11.4 168.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000055820 Or8g4 ENSMUST00000213358 ENSMUSP00000150183 TRANSLATION protein_coding - CCDS23059.1 5 310.0 0.0 1.0 11.4 168.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035919 Bbs9 ENSMUST00000127296 ENSMUSP00000121992 TRANSLATION nonsense_mediated_decay start - 5 61.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035919 Bbs9 ENSMUST00000128812 ENSMUSP00000117700 TRANSLATION protein_coding stop - 5 147.0 0.0 4.0 0.0 194.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000035919 Bbs9 ENSMUST00000147405 ENSMUSP00000120927 TRANSLATION protein_coding - - 5 885.0 0.0 17.3475 11.0 1048.5 0.0 -4,-5 0.7715 15 10.932 PRINCIPAL:3 ENSMUSG00000035919 Bbs9 ENSMUST00000039798 ENSMUSP00000043042 TRANSLATION protein_coding - CCDS22928.1 1 880.0 0.0 17.3475 13.0 1054.0 0.0 -4,-5 1.0 14 12.0 ALTERNATIVE:1 ENSMUSG00000035919 Bbs9 ENSMUST00000142313 ENSMUSP00000122325 TRANSLATION protein_coding stop - 3 132.0 0.0 3.5 0.0 164.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000035919 Bbs9 ENSMUST00000152719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035919 Bbs9 ENSMUST00000136084 ENSMUSP00000123160 TRANSLATION protein_coding start - 5 163.0 0.0 4.726 0.0 141.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035919 Bbs9 ENSMUST00000124076 - NO_TRANSLATION retained_intron ENSMUSG00000035919 Bbs9 ENSMUST00000137547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035919 Bbs9 ENSMUST00000150395 ENSMUSP00000116629 TRANSLATION protein_coding - CCDS22928.1 1 880.0 0.0 17.3475 13.0 1054.0 0.0 -4,-5 1.0 14 12.0 ALTERNATIVE:1 ENSMUSG00000035919 Bbs9 ENSMUST00000130479 - NO_TRANSLATION retained_intron ENSMUSG00000035919 Bbs9 ENSMUST00000147712 ENSMUSP00000122058 TRANSLATION protein_coding - CCDS22928.1 1 880.0 0.0 17.3475 13.0 1054.0 0.0 -4,-5 1.0 14 12.0 ALTERNATIVE:1 ENSMUSG00000032484 Ngp ENSMUST00000035061 ENSMUSP00000035061 TRANSLATION protein_coding - CCDS23566.1 1 167.0 0.0 1.5 1.1 109.0 0.0 3,-2 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000032217 Rnf111 ENSMUST00000215848 ENSMUSP00000149445 TRANSLATION protein_coding - - 1 981.0 8.0 2.6 8.1 412.3 0.0 -4,-5 0.7442 3 16.337 ALTERNATIVE:1 ENSMUSG00000032217 Rnf111 ENSMUST00000034739 ENSMUSP00000034739 TRANSLATION protein_coding - CCDS23321.1 1 989.0 8.0 2.765 8.9 412.3 0.0 -4,-5 1.0 3 17.0 PRINCIPAL:2 ENSMUSG00000032217 Rnf111 ENSMUST00000213647 ENSMUSP00000149501 TRANSLATION protein_coding - - 1 980.0 8.0 2.6 8.1 412.3 0.0 -4,-5 0.7421 3 16.337 ALTERNATIVE:1 ENSMUSG00000032217 Rnf111 ENSMUST00000113595 ENSMUSP00000109225 TRANSLATION protein_coding - CCDS23321.1 5 989.0 8.0 2.765 8.9 412.3 0.0 -4,-5 1.0 3 17.0 PRINCIPAL:2 ENSMUSG00000032217 Rnf111 ENSMUST00000213208 - NO_TRANSLATION retained_intron ENSMUSG00000032217 Rnf111 ENSMUST00000213996 - NO_TRANSLATION retained_intron ENSMUSG00000032217 Rnf111 ENSMUST00000215948 - NO_TRANSLATION retained_intron ENSMUSG00000032217 Rnf111 ENSMUST00000213694 - NO_TRANSLATION retained_intron ENSMUSG00000032392 Parp16 ENSMUST00000216702 ENSMUSP00000149927 TRANSLATION protein_coding - CCDS23286.1 1 322.0 0.0 3.75 7.8 118.7 1.0 -4,-2 1.0 4 12.842 PRINCIPAL:1 ENSMUSG00000032392 Parp16 ENSMUST00000069000 ENSMUSP00000070098 TRANSLATION protein_coding - CCDS23286.1 1 322.0 0.0 3.75 7.8 118.7 1.0 -4,-2 1.0 4 12.842 PRINCIPAL:1 ENSMUSG00000032392 Parp16 ENSMUST00000213766 - NO_TRANSLATION retained_intron ENSMUSG00000032392 Parp16 ENSMUST00000216486 ENSMUSP00000150997 TRANSLATION nonsense_mediated_decay - - 1 237.0 0.0 4.33 0.0 87.3 0.0 -4,-2 0.0201 3 -2.0 MINOR ENSMUSG00000032392 Parp16 ENSMUST00000213396 ENSMUSP00000150318 TRANSLATION protein_coding - CCDS23286.1 1 322.0 0.0 3.75 7.8 118.7 1.0 -4,-2 1.0 4 12.842 PRINCIPAL:1 ENSMUSG00000003309 Ap1m2 ENSMUST00000213762 ENSMUSP00000149196 TRANSLATION nonsense_mediated_decay - - 5 195.0 0.0 3.89 0.0 27.2 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000003309 Ap1m2 ENSMUST00000213483 - NO_TRANSLATION retained_intron ENSMUSG00000003309 Ap1m2 ENSMUST00000213250 ENSMUSP00000150667 TRANSLATION protein_coding stop - 3 224.0 0.0 4.97 0.0 130.7 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000003309 Ap1m2 ENSMUST00000003397 ENSMUSP00000003397 TRANSLATION protein_coding - CCDS22902.1 1 423.0 0.0 10.3 34.2 331.6 0.0 -4,-6 1.0 14 12.0 ALTERNATIVE:1 ENSMUSG00000003309 Ap1m2 ENSMUST00000115433 ENSMUSP00000111093 TRANSLATION protein_coding - CCDS52734.1 1 425.0 0.0 10.3 34.2 331.4 0.0 -4,-6 0.9905 15 11.5 PRINCIPAL:3 ENSMUSG00000092192 Dnaaf4 ENSMUST00000034734 ENSMUSP00000034734 TRANSLATION protein_coding - CCDS23333.1 1 420.0 0.0 2.15 9.5 25.5 0.0 -4,-7 1.0 1 13.71 PRINCIPAL:1 ENSMUSG00000092192 Dnaaf4 ENSMUST00000098567 ENSMUSP00000096166 TRANSLATION protein_coding - CCDS52854.1 5 300.0 0.0 2.74 0.0 25.5 0.0 -4,-7 0.1584 1 12.0 MINOR ENSMUSG00000034252 Senp6 ENSMUST00000175673 - NO_TRANSLATION retained_intron ENSMUSG00000034252 Senp6 ENSMUST00000176640 ENSMUSP00000135494 TRANSLATION protein_coding stop - 5 131.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000034252 Senp6 ENSMUST00000176563 - NO_TRANSLATION retained_intron ENSMUSG00000034252 Senp6 ENSMUST00000164859 ENSMUSP00000128918 TRANSLATION protein_coding - - 1 966.0 4.0 3.1 0.0 119.3 0.0 -4,-5 0.8429 11 10.0 ALTERNATIVE:2 ENSMUSG00000034252 Senp6 ENSMUST00000037484 ENSMUSP00000047220 TRANSLATION protein_coding - CCDS40705.1 1 1132.0 4.0 3.1 0.0 119.3 0.0 -4,-7 0.673 15 10.0 ALTERNATIVE:2 ENSMUSG00000034252 Senp6 ENSMUST00000175758 - NO_TRANSLATION retained_intron ENSMUSG00000034252 Senp6 ENSMUST00000176607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034252 Senp6 ENSMUST00000175722 - NO_TRANSLATION retained_intron ENSMUSG00000034252 Senp6 ENSMUST00000176360 ENSMUSP00000135108 TRANSLATION protein_coding start/stop - 5 285.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0022 5 -2.0 MINOR ENSMUSG00000034252 Senp6 ENSMUST00000177544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034252 Senp6 ENSMUST00000176527 ENSMUSP00000135719 TRANSLATION protein_coding start/stop - 2 204.0 0.0 2.1 0.0 30.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034252 Senp6 ENSMUST00000165607 ENSMUSP00000126777 TRANSLATION protein_coding - CCDS81040.1 1 1139.0 4.0 3.1 0.0 119.3 0.0 -4,-7 0.6795 15 10.0 PRINCIPAL:4 ENSMUSG00000034252 Senp6 ENSMUST00000175999 ENSMUSP00000135401 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000034252 Senp6 ENSMUST00000176648 ENSMUSP00000135219 TRANSLATION protein_coding start - 2 179.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000034252 Senp6 ENSMUST00000175910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006235 Epor ENSMUST00000213181 ENSMUSP00000149402 TRANSLATION protein_coding stop - 2 111.0 0.0 2.5 0.0 54.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000006235 Epor ENSMUST00000006397 ENSMUSP00000006397 TRANSLATION protein_coding - CCDS22915.1 1 507.0 0.0 6.525 8.2 124.8 0.0 1,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057367 Birc2 ENSMUST00000054878 ENSMUSP00000062610 TRANSLATION protein_coding start - - 125.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0007 - -2.0 MINOR ENSMUSG00000057367 Birc2 ENSMUST00000074246 ENSMUSP00000091422 TRANSLATION protein_coding - CCDS22811.1 1 612.0 12.0 4.3 1.0 348.8 0.0 -4,-7 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000057367 Birc2 ENSMUST00000190341 ENSMUSP00000140049 TRANSLATION protein_coding - CCDS22811.1 5 612.0 12.0 4.3 1.0 348.8 0.0 -4,-7 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000057367 Birc2 ENSMUST00000191248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057367 Birc2 ENSMUST00000189935 - NO_TRANSLATION retained_intron ENSMUSG00000031933 Izumo1r ENSMUST00000121116 ENSMUSP00000113387 TRANSLATION protein_coding - - 2 190.0 0.0 3.5 0.0 150.9 0.0 3,-2 0.0004 - 7.554 MINOR ENSMUSG00000031933 Izumo1r ENSMUST00000117620 ENSMUSP00000113459 TRANSLATION protein_coding - - 1 173.0 0.0 3.75 0.0 149.4 0.0 3,-2 0.0007 - 7.962 MINOR ENSMUSG00000031933 Izumo1r ENSMUST00000069408 ENSMUSP00000063632 TRANSLATION protein_coding - CCDS22830.1 1 172.0 0.0 3.5 0.0 148.3 0.0 3,-2 0.0227 - 7.398 MINOR ENSMUSG00000031933 Izumo1r ENSMUST00000034409 ENSMUSP00000034409 TRANSLATION protein_coding - CCDS22831.1 1 244.0 0.0 4.5 4.6 191.7 0.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031933 Izumo1r ENSMUST00000148155 ENSMUSP00000118680 TRANSLATION protein_coding stop - 3 143.0 0.0 3.0 0.0 129.9 0.0 3,-2 0.0004 - -2.0 MINOR ENSMUSG00000032360 Hcrtr2 ENSMUST00000063140 ENSMUSP00000058230 TRANSLATION protein_coding - CCDS23350.1 1 460.0 0.0 5.448 4.9 313.4 7.0 -4,-7 0.6305 1 13.116 MINOR ENSMUSG00000032360 Hcrtr2 ENSMUST00000184757 ENSMUSP00000139377 TRANSLATION protein_coding - - 1 443.0 0.0 5.448 15.0 313.4 7.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032360 Hcrtr2 ENSMUST00000184200 - NO_TRANSLATION retained_intron ENSMUSG00000095667 Or7g34 ENSMUST00000212872 ENSMUSP00000148270 TRANSLATION protein_coding - - - 312.0 0.0 1.0 9.3 173.3 5.0 -4,-6 0.8996 - 11.0 ALTERNATIVE:1 ENSMUSG00000095667 Or7g34 ENSMUST00000072419 ENSMUSP00000072248 TRANSLATION protein_coding - CCDS22861.1 - 315.0 0.0 1.0 9.3 173.3 5.0 -4,-6 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000020253 Ppm1m ENSMUST00000213197 ENSMUSP00000151133 TRANSLATION nonsense_mediated_decay start - 5 81.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020253 Ppm1m ENSMUST00000076258 ENSMUSP00000075607 TRANSLATION protein_coding - CCDS23471.1 1 406.0 6.0 7.898 0.4 105.4 0.0 -4,-7 0.2644 3 18.0 MINOR ENSMUSG00000020253 Ppm1m ENSMUST00000140761 ENSMUSP00000117908 TRANSLATION protein_coding - CCDS23472.2 1 462.0 6.0 7.898 6.1 105.4 0.0 -4,0 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000020253 Ppm1m ENSMUST00000215742 ENSMUSP00000148953 TRANSLATION nonsense_mediated_decay start - 5 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020253 Ppm1m ENSMUST00000152359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020253 Ppm1m ENSMUST00000136431 ENSMUSP00000118165 TRANSLATION protein_coding start - 3 204.0 1.0 5.05 0.0 54.8 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000020253 Ppm1m ENSMUST00000150731 - NO_TRANSLATION retained_intron ENSMUSG00000037206 Islr ENSMUST00000217578 ENSMUSP00000150316 TRANSLATION protein_coding stop - 3 150.0 0.0 0.6 0.0 50.7 0.0 4,-1 0.0018 6 -2.0 MINOR ENSMUSG00000037206 Islr ENSMUST00000168864 ENSMUSP00000126963 TRANSLATION protein_coding - CCDS23237.1 1 428.0 0.0 0.7 1.8 127.5 0.0 4,-1 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000037206 Islr ENSMUST00000041477 ENSMUSP00000045142 TRANSLATION protein_coding - CCDS23237.1 1 428.0 0.0 0.7 1.8 127.5 0.0 4,-1 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000052058 Or8b42 ENSMUST00000216644 ENSMUSP00000150506 TRANSLATION protein_coding - CCDS23009.1 5 311.0 0.0 1.0 9.7 159.3 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052058 Or8b42 ENSMUST00000063716 ENSMUSP00000066714 TRANSLATION protein_coding - CCDS23009.1 - 311.0 0.0 1.0 9.7 159.3 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052058 Or8b42 ENSMUST00000216502 ENSMUSP00000150507 TRANSLATION protein_coding - CCDS23009.1 3 311.0 0.0 1.0 9.7 159.3 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043659 Npsr1 ENSMUST00000133787 ENSMUSP00000117786 TRANSLATION protein_coding stop - 5 190.0 0.0 2.814 0.0 83.8 4.0 -4,-7 0.0037 - -2.0 MINOR ENSMUSG00000043659 Npsr1 ENSMUST00000154644 ENSMUSP00000115126 TRANSLATION protein_coding stop - 3 185.0 0.0 2.854 0.0 80.1 5.0 -4,-5 0.0029 - -2.0 MINOR ENSMUSG00000043659 Npsr1 ENSMUST00000154337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043659 Npsr1 ENSMUST00000059650 ENSMUSP00000056432 TRANSLATION protein_coding - CCDS22930.1 1 371.0 0.0 4.9915 18.8 145.5 8.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000035284 Vps13c ENSMUST00000213168 ENSMUSP00000149778 TRANSLATION protein_coding start - 1 757.0 0.0 0.0 0.0 250.9 0.0 -4,-5 0.0045 20 -2.0 MINOR ENSMUSG00000035284 Vps13c ENSMUST00000215524 ENSMUSP00000149945 TRANSLATION nonsense_mediated_decay start - 1 76.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0007 3 -2.0 MINOR ENSMUSG00000035284 Vps13c ENSMUST00000077879 ENSMUSP00000077040 TRANSLATION protein_coding - CCDS40676.1 1 3748.0 0.0 2.7 5.0 1014.7 0.0 -4,-5 1.0 103 14.0 PRINCIPAL:1 ENSMUSG00000035284 Vps13c ENSMUST00000216856 - NO_TRANSLATION retained_intron ENSMUSG00000035284 Vps13c ENSMUST00000217386 ENSMUSP00000150974 TRANSLATION nonsense_mediated_decay - - 1 771.0 0.0 2.7 0.0 510.1 0.0 -4,-5 0.0556 22 -2.0 MINOR ENSMUSG00000095957 Or7g19 ENSMUST00000218385 ENSMUSP00000151834 TRANSLATION protein_coding - CCDS22849.1 5 312.0 0.0 1.0 10.9 172.5 3.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095957 Or7g19 ENSMUST00000060601 ENSMUSP00000056724 TRANSLATION protein_coding - CCDS22849.1 - 312.0 0.0 1.0 10.9 172.5 3.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031927 1700012B09Rik ENSMUST00000060330 ENSMUSP00000049826 TRANSLATION protein_coding - CCDS40536.1 1 121.0 0.0 0.0 4.1 0.0 0.0 -4,-5 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000031927 1700012B09Rik ENSMUST00000191167 ENSMUSP00000140386 TRANSLATION nonsense_mediated_decay start - 3 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0126 - -2.0 MINOR ENSMUSG00000031927 1700012B09Rik ENSMUST00000188350 ENSMUSP00000139796 TRANSLATION nonsense_mediated_decay - CCDS40536.1 1 121.0 0.0 0.0 4.1 0.0 0.0 -4,-5 1.0 1 -2.0 MINOR ENSMUSG00000031927 1700012B09Rik ENSMUST00000191047 ENSMUSP00000140908 TRANSLATION protein_coding - - 3 132.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0177 1 0.0 MINOR ENSMUSG00000031927 1700012B09Rik ENSMUST00000186706 ENSMUSP00000140756 TRANSLATION nonsense_mediated_decay start - 5 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0198 - -2.0 MINOR ENSMUSG00000023186 Vwa5a ENSMUST00000001544 ENSMUSP00000001544 TRANSLATION protein_coding - CCDS23024.1 1 793.0 4.0 11.53 0.0 189.2 0.0 -4,-5 1.0 27 16.0 PRINCIPAL:1 ENSMUSG00000023186 Vwa5a ENSMUST00000137972 ENSMUSP00000121104 TRANSLATION nonsense_mediated_decay start - 5 137.0 0.0 0.6 0.0 0.0 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000023186 Vwa5a ENSMUST00000149376 - NO_TRANSLATION retained_intron ENSMUSG00000023186 Vwa5a ENSMUST00000130295 - NO_TRANSLATION retained_intron ENSMUSG00000023186 Vwa5a ENSMUST00000129598 ENSMUSP00000116251 TRANSLATION protein_coding stop - 3 38.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023186 Vwa5a ENSMUST00000152295 - NO_TRANSLATION retained_intron ENSMUSG00000023186 Vwa5a ENSMUST00000118144 ENSMUSP00000113596 TRANSLATION protein_coding - CCDS23024.1 1 793.0 4.0 11.53 0.0 189.2 0.0 -4,-5 1.0 27 16.0 PRINCIPAL:1 ENSMUSG00000059183 Mtfmt ENSMUST00000132966 - NO_TRANSLATION retained_intron ENSMUSG00000059183 Mtfmt ENSMUST00000130057 - NO_TRANSLATION retained_intron ENSMUSG00000059183 Mtfmt ENSMUST00000140244 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059183 Mtfmt ENSMUST00000074792 ENSMUSP00000074347 TRANSLATION protein_coding - CCDS23292.1 1 386.0 3.0 8.05 0.1 135.0 0.0 -4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000038357 Camp ENSMUST00000112022 ENSMUSP00000107653 TRANSLATION protein_coding - CCDS52934.1 1 172.0 0.0 2.75 1.6 210.4 0.0 3,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000032047 Acat1 ENSMUST00000169317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032047 Acat1 ENSMUST00000034547 ENSMUSP00000034547 TRANSLATION protein_coding - CCDS23184.1 1 424.0 20.0 10.0 7.4 475.4 0.0 -4,0 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000032047 Acat1 ENSMUST00000167130 - NO_TRANSLATION retained_intron ENSMUSG00000025898 Cwf19l2 ENSMUST00000027027 ENSMUSP00000027027 TRANSLATION protein_coding - CCDS22793.1 1 887.0 4.0 6.25 0.4 233.2 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000025898 Cwf19l2 ENSMUST00000212101 - NO_TRANSLATION retained_intron ENSMUSG00000025898 Cwf19l2 ENSMUST00000212644 - NO_TRANSLATION retained_intron ENSMUSG00000025898 Cwf19l2 ENSMUST00000212128 - NO_TRANSLATION retained_intron ENSMUSG00000053862 Slc51b ENSMUST00000065894 ENSMUSP00000064494 TRANSLATION protein_coding - CCDS23291.1 1 128.0 0.0 0.0 6.3 174.8 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000031928 Mre11a ENSMUST00000215820 ENSMUSP00000149184 TRANSLATION protein_coding stop - 5 57.0 2.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031928 Mre11a ENSMUST00000147676 ENSMUSP00000119999 TRANSLATION protein_coding start/stop - 3 170.0 1.0 4.33 0.0 123.6 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000031928 Mre11a ENSMUST00000115632 ENSMUSP00000111295 TRANSLATION protein_coding - CCDS80958.1 1 679.0 9.0 8.726 1.0 144.5 0.0 -4,-5 0.0721 11 11.922 MINOR ENSMUSG00000031928 Mre11a ENSMUST00000147305 ENSMUSP00000116321 TRANSLATION protein_coding stop - 3 203.0 6.0 5.16 0.0 46.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031928 Mre11a ENSMUST00000136568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031928 Mre11a ENSMUST00000034405 ENSMUSP00000034405 TRANSLATION protein_coding - CCDS22827.1 1 706.0 9.0 9.476 10.4 220.8 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000096427 Or8c17 ENSMUST00000093864 ENSMUSP00000091387 TRANSLATION protein_coding - CCDS23003.1 - 316.0 0.0 1.0 1.1 159.3 5.0 -4,-7 0.5317 - 12.033 MINOR ENSMUSG00000096427 Or8c17 ENSMUST00000212156 ENSMUSP00000148605 TRANSLATION protein_coding - - 3 308.0 0.0 1.0 10.4 159.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032279 Idh3a ENSMUST00000214136 - NO_TRANSLATION retained_intron ENSMUSG00000032279 Idh3a ENSMUST00000215273 ENSMUSP00000149036 TRANSLATION nonsense_mediated_decay - - 1 37.0 0.0 0.15 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000032279 Idh3a ENSMUST00000167866 ENSMUSP00000127526 TRANSLATION protein_coding - CCDS23191.1 1 366.0 30.0 8.15 30.8 380.2 0.0 -4,-1 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000032279 Idh3a ENSMUST00000213729 - NO_TRANSLATION retained_intron ENSMUSG00000032279 Idh3a ENSMUST00000217484 ENSMUSP00000150296 TRANSLATION protein_coding - - 1 384.0 30.0 8.15 0.4 380.2 0.0 -2,1 0.1646 17 18.0 MINOR ENSMUSG00000032473 Cldn18 ENSMUST00000035048 ENSMUSP00000035048 TRANSLATION protein_coding - CCDS23437.1 1 264.0 0.0 2.2 16.3 94.5 6.0 3,-2 0.9285 4 10.0 ALTERNATIVE:1 ENSMUSG00000032473 Cldn18 ENSMUST00000131922 ENSMUSP00000117382 TRANSLATION protein_coding - CCDS57693.1 1 208.0 0.0 2.2 0.0 98.8 6.0 2,-3 0.3035 - 6.0 MINOR ENSMUSG00000032473 Cldn18 ENSMUST00000112882 ENSMUSP00000108503 TRANSLATION protein_coding - CCDS57694.1 1 264.0 0.0 2.2 16.3 98.8 6.0 2,-3 1.0 4 10.0 PRINCIPAL:4 ENSMUSG00000032473 Cldn18 ENSMUST00000136429 ENSMUSP00000115782 TRANSLATION protein_coding - CCDS57692.1 1 208.0 0.0 2.2 0.0 94.5 6.0 3,-2 0.2103 - 6.0 MINOR ENSMUSG00000050641 BC048562 ENSMUST00000192955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050641 BC048562 ENSMUST00000057265 ENSMUSP00000059069 TRANSLATION protein_coding - CCDS23525.1 1 204.0 0.0 0.0 6.9 69.8 0.0 -4,-7 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000037949 Ano10 ENSMUST00000216081 ENSMUSP00000149278 TRANSLATION nonsense_mediated_decay - - 2 176.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000037949 Ano10 ENSMUST00000214283 ENSMUSP00000149772 TRANSLATION nonsense_mediated_decay - - 1 498.0 0.0 8.58 0.0 250.0 9.0 -4,-5 0.0029 10 -2.0 MINOR ENSMUSG00000037949 Ano10 ENSMUST00000042546 ENSMUSP00000045214 TRANSLATION protein_coding - CCDS23645.1 1 659.0 0.0 13.41 8.7 418.8 11.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000037949 Ano10 ENSMUST00000217606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037949 Ano10 ENSMUST00000216738 ENSMUSP00000149488 TRANSLATION protein_coding start - 2 100.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000037949 Ano10 ENSMUST00000214409 ENSMUSP00000151189 TRANSLATION protein_coding - - 1 601.0 0.0 12.41 1.2 351.7 7.0 -4,-5 0.0494 11 6.054 MINOR ENSMUSG00000037949 Ano10 ENSMUST00000214507 ENSMUSP00000151030 TRANSLATION protein_coding start - 1 478.0 0.0 8.66 0.0 418.8 11.0 -4,-6 0.0363 3 -2.0 MINOR ENSMUSG00000037949 Ano10 ENSMUST00000216670 ENSMUSP00000150161 TRANSLATION protein_coding - - 1 612.0 0.0 11.86 0.0 386.2 11.0 -4,-5 0.0126 10 6.942 MINOR ENSMUSG00000032323 Cyp11a1 ENSMUST00000188116 ENSMUSP00000140545 TRANSLATION protein_coding stop - 3 115.0 0.0 1.33 0.0 45.5 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000032323 Cyp11a1 ENSMUST00000188539 ENSMUSP00000140777 TRANSLATION protein_coding stop - 2 279.0 12.0 4.33 0.0 174.6 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000032323 Cyp11a1 ENSMUST00000034874 ENSMUSP00000034874 TRANSLATION protein_coding - CCDS40653.1 1 526.0 29.0 9.58 0.1 398.6 0.0 -4,-2 1.0 24 18.0 PRINCIPAL:1 ENSMUSG00000032323 Cyp11a1 ENSMUST00000188944 - NO_TRANSLATION retained_intron ENSMUSG00000035024 Ncapd3 ENSMUST00000214432 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035024 Ncapd3 ENSMUST00000216677 ENSMUSP00000150938 TRANSLATION protein_coding - CCDS57665.1 1 1506.0 0.0 0.0 0.0 93.2 0.0 -4,-5 1.0 13 6.0 PRINCIPAL:1 ENSMUSG00000035024 Ncapd3 ENSMUST00000073127 ENSMUSP00000072871 TRANSLATION protein_coding - CCDS57665.1 5 1506.0 0.0 0.0 0.0 93.2 0.0 -4,-5 1.0 13 6.0 PRINCIPAL:1 ENSMUSG00000035024 Ncapd3 ENSMUST00000217311 - NO_TRANSLATION retained_intron ENSMUSG00000035024 Ncapd3 ENSMUST00000214270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043943 Naalad2 ENSMUST00000172171 ENSMUSP00000130752 TRANSLATION protein_coding - - 1 778.0 11.0 16.35 1.5 225.9 2.0 -4,-6 0.2651 14 18.16 MINOR ENSMUSG00000043943 Naalad2 ENSMUST00000166825 ENSMUSP00000128674 TRANSLATION protein_coding - CCDS52728.1 1 740.0 11.0 16.35 13.4 225.9 2.0 -2,-6 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000043943 Naalad2 ENSMUST00000172200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043943 Naalad2 ENSMUST00000101453 ENSMUSP00000098996 TRANSLATION protein_coding stop - 2 53.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000043943 Naalad2 ENSMUST00000001826 ENSMUSP00000001826 TRANSLATION protein_coding - - 1 778.0 11.0 16.35 1.5 225.9 2.0 -4,-6 0.2651 14 18.16 MINOR ENSMUSG00000043943 Naalad2 ENSMUST00000172116 ENSMUSP00000133157 TRANSLATION protein_coding stop - 3 98.0 0.0 0.0 0.0 0.0 2.0 -4,-6 0.0012 1 -2.0 MINOR ENSMUSG00000043943 Naalad2 ENSMUST00000168934 - NO_TRANSLATION retained_intron ENSMUSG00000043943 Naalad2 ENSMUST00000164081 ENSMUSP00000126563 TRANSLATION protein_coding stop - 3 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035202 Lars2 ENSMUST00000214074 - NO_TRANSLATION retained_intron ENSMUSG00000035202 Lars2 ENSMUST00000216843 ENSMUSP00000150895 TRANSLATION protein_coding stop - 5 88.0 0.0 0.93 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000035202 Lars2 ENSMUST00000214557 - NO_TRANSLATION retained_intron ENSMUSG00000035202 Lars2 ENSMUST00000215464 ENSMUSP00000149082 TRANSLATION protein_coding start - 3 121.0 0.0 2.75 0.0 51.3 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000035202 Lars2 ENSMUST00000215674 - NO_TRANSLATION retained_intron ENSMUSG00000035202 Lars2 ENSMUST00000213711 - NO_TRANSLATION retained_intron ENSMUSG00000035202 Lars2 ENSMUST00000038863 ENSMUSP00000036710 TRANSLATION protein_coding - CCDS23659.1 1 902.0 6.0 20.68 13.8 188.4 0.0 -4,0 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000035202 Lars2 ENSMUST00000217116 ENSMUSP00000150083 TRANSLATION nonsense_mediated_decay - - 5 495.0 0.0 9.85 0.0 88.5 0.0 -4,0 0.001 7 -2.0 MINOR ENSMUSG00000035202 Lars2 ENSMUST00000215087 - NO_TRANSLATION retained_intron ENSMUSG00000090150 Acad11 ENSMUST00000128714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090150 Acad11 ENSMUST00000185819 - NO_TRANSLATION retained_intron ENSMUSG00000090150 Acad11 ENSMUST00000216220 - NO_TRANSLATION retained_intron ENSMUSG00000090150 Acad11 ENSMUST00000189133 - NO_TRANSLATION retained_intron ENSMUSG00000090150 Acad11 ENSMUST00000120854 ENSMUSP00000112994 TRANSLATION protein_coding - - 5 661.0 36.0 13.85 2.0 323.3 0.0 -4,-7 0.1433 16 6.081 MINOR ENSMUSG00000090150 Acad11 ENSMUST00000154431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090150 Acad11 ENSMUST00000047799 ENSMUSP00000043424 TRANSLATION protein_coding - CCDS23458.1 1 779.0 46.0 15.3 3.3 380.9 0.0 -4,-5 1.0 20 19.0 PRINCIPAL:1 ENSMUSG00000090150 Acad11 ENSMUST00000189998 ENSMUSP00000141064 TRANSLATION protein_coding - - 5 541.0 24.0 9.05 0.0 193.3 0.0 -4,-5 0.001 13 0.0 MINOR ENSMUSG00000032028 Nxpe2 ENSMUST00000135457 ENSMUSP00000117580 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 0.0 0.0 0.0 3.0 -2,-6 0.0003 - -2.0 MINOR ENSMUSG00000032028 Nxpe2 ENSMUST00000142667 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032028 Nxpe2 ENSMUST00000137976 ENSMUSP00000116684 TRANSLATION protein_coding stop - 3 187.0 0.0 1.0 0.0 33.0 3.0 -3,-7 0.0 1 -2.0 MINOR ENSMUSG00000032028 Nxpe2 ENSMUST00000034527 ENSMUSP00000034527 TRANSLATION protein_coding - CCDS23151.1 1 558.0 0.0 4.32 1.0 58.8 3.0 -2,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000032028 Nxpe2 ENSMUST00000149185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047980 Pate5 ENSMUST00000054175 ENSMUSP00000051917 TRANSLATION protein_coding - CCDS52760.1 1 117.0 0.0 2.0 0.7 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000032410 Xrn1 ENSMUST00000034981 ENSMUSP00000034981 TRANSLATION protein_coding - CCDS40728.1 1 1723.0 4.0 11.017 3.6 322.2 0.0 -4,-6 1.0 33 14.204 MINOR ENSMUSG00000032410 Xrn1 ENSMUST00000189612 - NO_TRANSLATION retained_intron ENSMUSG00000032410 Xrn1 ENSMUST00000189806 - NO_TRANSLATION retained_intron ENSMUSG00000032410 Xrn1 ENSMUST00000187359 - NO_TRANSLATION retained_intron ENSMUSG00000032410 Xrn1 ENSMUST00000187175 - NO_TRANSLATION retained_intron ENSMUSG00000032410 Xrn1 ENSMUST00000189106 ENSMUSP00000140004 TRANSLATION protein_coding stop - 5 40.0 0.0 1.05 0.0 49.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032410 Xrn1 ENSMUST00000190665 ENSMUSP00000139510 TRANSLATION protein_coding - - 1 969.0 4.0 12.414 0.0 322.2 0.0 -4,-6 0.7515 21 16.0 PRINCIPAL:1 ENSMUSG00000032410 Xrn1 ENSMUST00000185759 - NO_TRANSLATION retained_intron ENSMUSG00000032410 Xrn1 ENSMUST00000185633 ENSMUSP00000140278 TRANSLATION protein_coding - CCDS81053.1 1 1719.0 4.0 11.017 0.4 322.2 0.0 -4,-6 0.4707 33 13.204 MINOR ENSMUSG00000062762 Ei24 ENSMUST00000183360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062762 Ei24 ENSMUST00000184235 ENSMUSP00000139319 TRANSLATION protein_coding start/stop - 3 171.0 0.0 0.1 0.0 0.0 3.0 -4,-6 0.0019 2 -2.0 MINOR ENSMUSG00000062762 Ei24 ENSMUST00000183422 - NO_TRANSLATION retained_intron ENSMUSG00000062762 Ei24 ENSMUST00000163192 ENSMUSP00000132270 TRANSLATION protein_coding - - 1 340.0 0.0 2.2 22.2 69.6 4.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000062762 Ei24 ENSMUST00000115086 ENSMUSP00000110738 TRANSLATION protein_coding - CCDS22973.1 1 358.0 0.0 2.2 0.0 69.6 4.0 -4,-7 0.2708 4 12.0 MINOR ENSMUSG00000062762 Ei24 ENSMUST00000183430 - NO_TRANSLATION retained_intron ENSMUSG00000062762 Ei24 ENSMUST00000185124 - NO_TRANSLATION retained_intron ENSMUSG00000062762 Ei24 ENSMUST00000217339 - NO_TRANSLATION retained_intron ENSMUSG00000062762 Ei24 ENSMUST00000184395 ENSMUSP00000139150 TRANSLATION protein_coding stop - 3 163.0 0.0 0.1 0.0 0.0 3.0 -4,-5 0.0019 3 -2.0 MINOR ENSMUSG00000062762 Ei24 ENSMUST00000238932 ENSMUSP00000159090 TRANSLATION protein_coding - - - 340.0 0.0 2.2 22.2 69.6 4.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000062762 Ei24 ENSMUST00000239021 ENSMUSP00000159069 TRANSLATION protein_coding - CCDS22973.1 - 358.0 0.0 2.2 0.0 69.6 4.0 -4,-7 0.2708 4 12.0 MINOR ENSMUSG00000033538 Casp4 ENSMUST00000159461 ENSMUSP00000124535 TRANSLATION nonsense_mediated_decay start - 2 69.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033538 Casp4 ENSMUST00000163086 - NO_TRANSLATION retained_intron ENSMUSG00000033538 Casp4 ENSMUST00000160064 ENSMUSP00000124249 TRANSLATION nonsense_mediated_decay - - 2 118.0 0.0 1.1425 0.0 50.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033538 Casp4 ENSMUST00000162846 ENSMUSP00000124402 TRANSLATION protein_coding stop - 5 93.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033538 Casp4 ENSMUST00000160521 - NO_TRANSLATION retained_intron ENSMUSG00000033538 Casp4 ENSMUST00000152651 - NO_TRANSLATION retained_intron ENSMUSG00000033538 Casp4 ENSMUST00000027012 ENSMUSP00000027012 TRANSLATION protein_coding - CCDS22799.1 1 373.0 5.0 7.6925 0.1 205.1 0.0 -4,-5 1.0 2 17.0 PRINCIPAL:1 ENSMUSG00000051493 Or8d6 ENSMUST00000062833 ENSMUSP00000062985 TRANSLATION protein_coding - CCDS23066.1 - 310.0 0.0 1.0 9.7 176.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051493 Or8d6 ENSMUST00000213246 ENSMUSP00000149630 TRANSLATION protein_coding - CCDS23066.1 2 310.0 0.0 1.0 9.7 176.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091215 Pate1 ENSMUST00000170021 ENSMUSP00000130484 TRANSLATION protein_coding - CCDS57669.1 5 125.0 0.0 2.0 0.1 0.0 0.0 2,-3 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000091215 Pate1 ENSMUST00000183567 - NO_TRANSLATION retained_intron ENSMUSG00000036057 Ptpn23 ENSMUST00000199254 - NO_TRANSLATION retained_intron ENSMUSG00000036057 Ptpn23 ENSMUST00000200278 - NO_TRANSLATION retained_intron ENSMUSG00000036057 Ptpn23 ENSMUST00000200531 ENSMUSP00000142930 TRANSLATION protein_coding start/stop - 3 249.0 8.0 1.0 0.0 41.1 0.0 -1,-4 0.0 2 -2.0 MINOR ENSMUSG00000036057 Ptpn23 ENSMUST00000040021 ENSMUSP00000039580 TRANSLATION protein_coding - CCDS40780.1 5 1692.0 11.0 18.05 0.0 629.4 0.0 -4,-5 1.0 34 18.0 PRINCIPAL:1 ENSMUSG00000032098 Treh ENSMUST00000034609 ENSMUSP00000034609 TRANSLATION protein_coding - CCDS23117.1 1 576.0 14.0 13.625 0.3 609.3 0.0 2,-2 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000032098 Treh ENSMUST00000071219 ENSMUSP00000071206 TRANSLATION protein_coding - CCDS72222.1 1 541.0 11.0 9.875 0.3 466.5 0.0 2,-2 0.0506 10 4.002 MINOR ENSMUSG00000032098 Treh ENSMUST00000139389 ENSMUSP00000120671 TRANSLATION nonsense_mediated_decay - - 1 150.0 0.0 3.125 0.0 64.8 0.0 2,-2 0.003 - -2.0 MINOR ENSMUSG00000032098 Treh ENSMUST00000150822 ENSMUSP00000123144 TRANSLATION nonsense_mediated_decay start - 3 124.0 6.0 2.25 0.0 99.2 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000061039 Or8b53 ENSMUST00000074740 ENSMUSP00000074300 TRANSLATION protein_coding - CCDS23025.1 1 310.0 0.0 1.0 11.4 157.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032418 Me1 ENSMUST00000034989 ENSMUSP00000034989 TRANSLATION protein_coding - CCDS23383.1 1 572.0 20.0 13.5 8.5 614.1 0.0 -4,-7 1.0 27 21.0 PRINCIPAL:1 ENSMUSG00000032418 Me1 ENSMUST00000189968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032418 Me1 ENSMUST00000189847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032418 Me1 ENSMUST00000185374 ENSMUSP00000140887 TRANSLATION protein_coding - CCDS81047.1 1 552.0 20.0 12.948 2.3 614.1 0.0 -4,-5 0.3153 26 17.415 MINOR ENSMUSG00000036737 Oxsr1 ENSMUST00000136902 - NO_TRANSLATION retained_intron ENSMUSG00000036737 Oxsr1 ENSMUST00000143728 ENSMUSP00000117327 TRANSLATION nonsense_mediated_decay start - 5 139.0 0.0 1.28 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036737 Oxsr1 ENSMUST00000040853 ENSMUSP00000042155 TRANSLATION protein_coding - CCDS57714.1 1 527.0 19.0 10.81 11.0 286.6 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000036737 Oxsr1 ENSMUST00000128880 ENSMUSP00000122692 TRANSLATION nonsense_mediated_decay - - 1 113.0 14.0 3.0 0.0 57.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034115 Scn11a ENSMUST00000215718 ENSMUSP00000149420 TRANSLATION protein_coding - CCDS40804.1 1 1765.0 0.0 9.49 0.1 933.4 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000034115 Scn11a ENSMUST00000070617 ENSMUSP00000065466 TRANSLATION protein_coding - CCDS40804.1 1 1765.0 0.0 9.49 0.1 933.4 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025239 Limd1 ENSMUST00000213278 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025239 Limd1 ENSMUST00000026269 ENSMUSP00000026269 TRANSLATION protein_coding - CCDS23660.1 1 668.0 23.0 5.25 0.1 126.2 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000025239 Limd1 ENSMUST00000214309 - NO_TRANSLATION retained_intron ENSMUSG00000025239 Limd1 ENSMUST00000216352 - NO_TRANSLATION retained_intron ENSMUSG00000025239 Limd1 ENSMUST00000217639 ENSMUSP00000150888 TRANSLATION protein_coding start/stop - 5 72.0 8.0 1.664 0.0 55.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000111497 Gm38431 ENSMUST00000217359 ENSMUSP00000151195 TRANSLATION nonsense_mediated_decay,RT - CCDS40550.1 2 748.0 0.0 4.08 3.2 74.6 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000111497 Gm38431 ENSMUST00000217282 ENSMUSP00000149675 TRANSLATION nonsense_mediated_decay,RT start - 2 488.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000010064 Slc38a3 ENSMUST00000194895 - NO_TRANSLATION retained_intron ENSMUSG00000010064 Slc38a3 ENSMUST00000194230 - NO_TRANSLATION retained_intron ENSMUSG00000010064 Slc38a3 ENSMUST00000010208 ENSMUSP00000010208 TRANSLATION protein_coding - CCDS23503.1 1 505.0 0.0 4.082 9.2 360.4 14.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000010064 Slc38a3 ENSMUST00000192323 ENSMUSP00000141850 TRANSLATION protein_coding stop - 3 181.0 0.0 1.35 0.0 111.7 4.0 -4,-5 0.0037 6 -2.0 MINOR ENSMUSG00000010064 Slc38a3 ENSMUST00000192211 ENSMUSP00000141569 TRANSLATION nonsense_mediated_decay start - 3 125.0 0.0 0.932 0.0 79.3 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000010064 Slc38a3 ENSMUST00000195739 ENSMUSP00000141484 TRANSLATION nonsense_mediated_decay start - 3 160.0 0.0 1.25 0.0 44.9 2.0 -3,-5 0.0015 - -2.0 MINOR ENSMUSG00000010064 Slc38a3 ENSMUST00000177567 ENSMUSP00000137561 TRANSLATION protein_coding - CCDS23503.1 1 505.0 0.0 4.082 9.2 360.4 14.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000010064 Slc38a3 ENSMUST00000193495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010064 Slc38a3 ENSMUST00000191923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010064 Slc38a3 ENSMUST00000192990 ENSMUSP00000141528 TRANSLATION protein_coding stop - 3 154.0 0.0 0.85 0.0 85.7 3.0 -4,-5 0.0015 6 -2.0 MINOR ENSMUSG00000010064 Slc38a3 ENSMUST00000167868 ENSMUSP00000130414 TRANSLATION protein_coding - CCDS23503.1 1 505.0 0.0 4.082 9.2 360.4 14.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000010064 Slc38a3 ENSMUST00000195033 - NO_TRANSLATION retained_intron ENSMUSG00000010064 Slc38a3 ENSMUST00000195843 ENSMUSP00000141552 TRANSLATION protein_coding stop - 3 99.0 0.0 0.0 0.0 34.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000010064 Slc38a3 ENSMUST00000193932 ENSMUSP00000142087 TRANSLATION protein_coding - CCDS23503.1 1 505.0 0.0 4.082 9.2 360.4 14.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000039217 Il18 ENSMUST00000213916 ENSMUSP00000150305 TRANSLATION protein_coding - - 1 78.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 1.998 MINOR ENSMUSG00000039217 Il18 ENSMUST00000214117 ENSMUSP00000151002 TRANSLATION protein_coding - CCDS40622.1 1 192.0 0.0 3.0 7.0 98.1 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000039217 Il18 ENSMUST00000180021 ENSMUSP00000137193 TRANSLATION protein_coding - CCDS40622.1 1 192.0 0.0 3.0 7.0 98.1 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000039217 Il18 ENSMUST00000059081 ENSMUSP00000054591 TRANSLATION protein_coding - - 5 192.0 0.0 3.0 7.0 98.1 0.0 -4,-5 0.8268 5 10.0 ALTERNATIVE:1 ENSMUSG00000032035 Ets1 ENSMUST00000184110 - NO_TRANSLATION retained_intron ENSMUSG00000032035 Ets1 ENSMUST00000050797 ENSMUSP00000051303 TRANSLATION protein_coding - CCDS40572.1 1 353.0 0.0 4.5 6.4 246.1 0.0 -4,-5 0.3414 3 10.882 MINOR ENSMUSG00000032035 Ets1 ENSMUST00000238819 ENSMUSP00000159086 TRANSLATION protein_coding - - - 484.0 0.0 5.5 0.0 246.1 0.0 -4,-6 0.0343 3 12.0 MINOR ENSMUSG00000032035 Ets1 ENSMUST00000183879 - NO_TRANSLATION retained_intron ENSMUSG00000032035 Ets1 ENSMUST00000184364 ENSMUSP00000139107 TRANSLATION protein_coding - - 5 224.0 0.0 3.5 1.0 127.3 0.0 -4,-5 0.0024 2 1.998 MINOR ENSMUSG00000032035 Ets1 ENSMUST00000184887 ENSMUSP00000138951 TRANSLATION protein_coding - - 5 272.0 0.0 2.0 0.0 118.8 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000032035 Ets1 ENSMUST00000034534 ENSMUSP00000034534 TRANSLATION protein_coding - CCDS22954.1 1 440.0 0.0 5.5 25.6 246.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000066829 Zfp810 ENSMUST00000214499 - NO_TRANSLATION retained_intron ENSMUSG00000066829 Zfp810 ENSMUST00000217563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066829 Zfp810 ENSMUST00000215202 ENSMUSP00000150816 TRANSLATION protein_coding - - 3 80.0 0.0 1.6 0.0 87.9 0.0 -4,-7 0.0 - 3.276 MINOR ENSMUSG00000066829 Zfp810 ENSMUST00000086278 ENSMUSP00000083459 TRANSLATION protein_coding - CCDS40562.1 1 461.0 40.0 2.93 0.4 222.9 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000049281 Scn3b ENSMUST00000175873 - NO_TRANSLATION retained_intron ENSMUSG00000049281 Scn3b ENSMUST00000176169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049281 Scn3b ENSMUST00000216398 ENSMUSP00000149616 TRANSLATION protein_coding start - 2 57.0 0.0 1.6 0.0 0.0 3.0 4,-1 0.0009 1 -2.0 MINOR ENSMUSG00000049281 Scn3b ENSMUST00000176185 ENSMUSP00000135096 TRANSLATION protein_coding - CCDS72214.1 1 175.0 0.0 4.68 6.2 65.3 3.0 -4,-5 0.4382 4 10.821 MINOR ENSMUSG00000049281 Scn3b ENSMUST00000114956 ENSMUSP00000110606 TRANSLATION protein_coding - CCDS23080.1 1 215.0 0.0 5.43 12.9 78.2 3.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000049281 Scn3b ENSMUST00000176634 - NO_TRANSLATION retained_intron ENSMUSG00000049281 Scn3b ENSMUST00000176547 ENSMUSP00000135470 TRANSLATION protein_coding start - 3 120.0 0.0 2.93 0.0 0.0 3.0 -4,-6 0.0002 2 -2.0 MINOR ENSMUSG00000049281 Scn3b ENSMUST00000049941 ENSMUSP00000051627 TRANSLATION protein_coding - CCDS23080.1 1 215.0 0.0 5.43 12.9 78.2 3.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000049281 Scn3b ENSMUST00000171835 ENSMUSP00000132933 TRANSLATION protein_coding - CCDS23080.1 1 215.0 0.0 5.43 12.9 78.2 3.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000066897 Or7e176 ENSMUST00000086474 ENSMUSP00000083665 TRANSLATION protein_coding - CCDS22874.2 2 323.0 0.0 1.0 3.8 151.0 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032586 Traip ENSMUST00000192567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032586 Traip ENSMUST00000194538 - NO_TRANSLATION retained_intron ENSMUSG00000032586 Traip ENSMUST00000194271 ENSMUSP00000141689 TRANSLATION protein_coding stop - 5 142.0 8.0 1.39 0.0 39.8 0.0 -4,-6 0.0318 - -2.0 MINOR ENSMUSG00000032586 Traip ENSMUST00000049348 ENSMUSP00000040001 TRANSLATION protein_coding - CCDS23511.1 1 470.0 8.0 1.39 11.3 39.8 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000032586 Traip ENSMUST00000195803 - NO_TRANSLATION retained_intron ENSMUSG00000032586 Traip ENSMUST00000193715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032586 Traip ENSMUST00000194191 - NO_TRANSLATION retained_intron ENSMUSG00000032086 Bace1 ENSMUST00000162559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032086 Bace1 ENSMUST00000162587 ENSMUSP00000124960 TRANSLATION protein_coding start - 5 360.0 2.0 6.68 0.0 98.7 1.0 -4,-5 0.0009 4 -2.0 MINOR ENSMUSG00000032086 Bace1 ENSMUST00000034591 ENSMUSP00000034591 TRANSLATION protein_coding - CCDS23135.1 1 501.0 5.0 9.51 8.7 154.9 1.0 1,-2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000032086 Bace1 ENSMUST00000159499 ENSMUSP00000124773 TRANSLATION nonsense_mediated_decay start - 1 65.0 3.0 1.83 0.0 34.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032086 Bace1 ENSMUST00000159970 - NO_TRANSLATION retained_intron ENSMUSG00000032086 Bace1 ENSMUST00000078111 ENSMUSP00000077249 TRANSLATION protein_coding - CCDS52784.1 1 467.0 3.0 8.51 1.0 127.2 1.0 1,-2 0.0801 5 11.34 MINOR ENSMUSG00000063382 Bcl9l ENSMUST00000074989 ENSMUSP00000074516 TRANSLATION protein_coding - CCDS40601.1 1 1494.0 0.0 0.95 7.8 55.1 0.0 -4,-2 1.0 13 10.0 PRINCIPAL:4 ENSMUSG00000063382 Bcl9l ENSMUST00000220303 ENSMUSP00000151342 TRANSLATION protein_coding - - 1 1457.0 0.0 0.95 7.1 55.1 0.0 -4,-5 0.7885 13 9.794 ALTERNATIVE:1 ENSMUSG00000063382 Bcl9l ENSMUST00000218183 ENSMUSP00000151837 TRANSLATION protein_coding - CCDS40601.1 5 1494.0 0.0 0.95 7.8 55.1 0.0 -4,-2 1.0 13 10.0 PRINCIPAL:4 ENSMUSG00000063382 Bcl9l ENSMUST00000218913 ENSMUSP00000151653 TRANSLATION protein_coding stop - 3 90.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000063382 Bcl9l ENSMUST00000217898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063382 Bcl9l ENSMUST00000220292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051160 Or7g33 ENSMUST00000058296 ENSMUSP00000053262 TRANSLATION protein_coding - CCDS22860.1 - 305.0 0.0 1.0 4.0 193.8 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051160 Or7g33 ENSMUST00000213834 ENSMUSP00000150773 TRANSLATION protein_coding - CCDS22860.1 5 305.0 0.0 1.0 4.0 193.8 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000023345 Poc1a ENSMUST00000214208 ENSMUSP00000149262 TRANSLATION protein_coding start - 5 331.0 0.0 6.85 0.0 221.6 0.0 -4,-5 0.0109 3 -2.0 MINOR ENSMUSG00000023345 Poc1a ENSMUST00000216306 ENSMUSP00000149444 TRANSLATION protein_coding start - 5 428.0 0.0 6.85 0.0 221.6 0.0 -4,-5 0.0112 3 -2.0 MINOR ENSMUSG00000023345 Poc1a ENSMUST00000217213 ENSMUSP00000150865 TRANSLATION protein_coding - - 5 367.0 0.0 6.4175 6.3 197.2 0.0 -4,-2 0.2917 4 9.765 MINOR ENSMUSG00000023345 Poc1a ENSMUST00000214483 ENSMUSP00000148880 TRANSLATION protein_coding start - 5 394.0 0.0 7.0825 0.0 221.6 0.0 -4,-5 0.0379 4 -2.0 MINOR ENSMUSG00000023345 Poc1a ENSMUST00000214540 ENSMUSP00000149273 TRANSLATION nonsense_mediated_decay - - 5 299.0 0.0 6.6 0.0 197.2 0.0 -4,-2 0.0204 2 -2.0 MINOR ENSMUSG00000023345 Poc1a ENSMUST00000072206 ENSMUSP00000072064 TRANSLATION protein_coding - CCDS23474.1 1 405.0 0.0 7.4125 9.7 231.7 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000023345 Poc1a ENSMUST00000191434 ENSMUSP00000140374 TRANSLATION protein_coding - - 1 356.0 0.0 7.378 3.2 231.7 0.0 -4,-5 0.2902 4 12.693 MINOR ENSMUSG00000023345 Poc1a ENSMUST00000186366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023345 Poc1a ENSMUST00000216228 ENSMUSP00000150549 TRANSLATION protein_coding - - 5 367.0 0.0 6.4175 6.3 197.2 0.0 -4,-2 0.2917 4 9.765 MINOR ENSMUSG00000023345 Poc1a ENSMUST00000188660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023345 Poc1a ENSMUST00000189325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032396 Dis3l ENSMUST00000113890 ENSMUSP00000109522 TRANSLATION protein_coding - CCDS23280.1 1 970.0 1.0 7.084 4.9 301.6 0.0 -4,-7 0.5922 17 13.381 MINOR ENSMUSG00000032396 Dis3l ENSMUST00000168844 ENSMUSP00000129772 TRANSLATION protein_coding - CCDS52832.1 1 1053.0 4.0 7.582 9.5 301.6 0.0 -4,0 1.0 17 19.0 PRINCIPAL:1 ENSMUSG00000032396 Dis3l ENSMUST00000120760 ENSMUSP00000113503 TRANSLATION protein_coding - CCDS23280.1 1 970.0 1.0 7.084 4.9 301.6 0.0 -4,-7 0.5922 17 13.381 MINOR ENSMUSG00000032396 Dis3l ENSMUST00000144257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032396 Dis3l ENSMUST00000128129 - NO_TRANSLATION retained_intron ENSMUSG00000032396 Dis3l ENSMUST00000154076 ENSMUSP00000115236 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000032396 Dis3l ENSMUST00000068367 ENSMUSP00000063830 TRANSLATION protein_coding - CCDS23280.1 1 970.0 1.0 7.084 4.9 301.6 0.0 -4,-7 0.5922 17 13.381 MINOR ENSMUSG00000032396 Dis3l ENSMUST00000134843 - NO_TRANSLATION retained_intron ENSMUSG00000037681 Esyt3 ENSMUST00000186626 - NO_TRANSLATION retained_intron ENSMUSG00000037681 Esyt3 ENSMUST00000042158 ENSMUSP00000038757 TRANSLATION protein_coding - CCDS40739.1 1 891.0 6.0 13.03 4.2 370.4 0.0 -4,-7 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000037681 Esyt3 ENSMUST00000190002 - NO_TRANSLATION retained_intron ENSMUSG00000037681 Esyt3 ENSMUST00000187520 ENSMUSP00000140567 TRANSLATION protein_coding start/stop - 3 198.0 5.0 4.95 0.0 110.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037681 Esyt3 ENSMUST00000187365 - NO_TRANSLATION retained_intron ENSMUSG00000032059 Alg9 ENSMUST00000162073 ENSMUSP00000125425 TRANSLATION nonsense_mediated_decay - - 1 205.0 0.0 1.6 0.0 96.4 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000032059 Alg9 ENSMUST00000162363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032059 Alg9 ENSMUST00000175728 ENSMUSP00000135023 TRANSLATION protein_coding start - 3 87.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000032059 Alg9 ENSMUST00000177320 ENSMUSP00000134818 TRANSLATION nonsense_mediated_decay start - 5 109.0 0.0 1.098 0.0 45.3 2.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000032059 Alg9 ENSMUST00000034561 ENSMUSP00000034561 TRANSLATION protein_coding - CCDS23175.1 1 611.0 0.0 10.826 7.7 415.9 10.0 -4,-6 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000032059 Alg9 ENSMUST00000162596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032059 Alg9 ENSMUST00000159576 ENSMUSP00000123711 TRANSLATION protein_coding stop - 5 228.0 0.0 2.15 0.0 138.7 4.0 -4,-6 0.0023 3 -2.0 MINOR ENSMUSG00000032059 Alg9 ENSMUST00000162442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032059 Alg9 ENSMUST00000161200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032561 Acp3 ENSMUST00000131084 - NO_TRANSLATION retained_intron ENSMUSG00000032561 Acp3 ENSMUST00000215852 ENSMUSP00000150874 TRANSLATION protein_coding stop - 5 155.0 4.0 3.4 0.0 29.4 0.0 3,-1 0.0006 2 -2.0 MINOR ENSMUSG00000032561 Acp3 ENSMUST00000125800 - NO_TRANSLATION retained_intron ENSMUSG00000032561 Acp3 ENSMUST00000112590 ENSMUSP00000108209 TRANSLATION protein_coding - CCDS40750.1 1 381.0 6.0 8.9 0.1 114.1 0.0 3,-1 0.3479 5 12.0 ALTERNATIVE:2 ENSMUSG00000032561 Acp3 ENSMUST00000128635 - NO_TRANSLATION retained_intron ENSMUSG00000032561 Acp3 ENSMUST00000062723 ENSMUSP00000059889 TRANSLATION protein_coding - CCDS23460.1 1 417.0 6.0 8.9 3.8 114.1 0.0 3,-1 1.0 5 13.0 PRINCIPAL:2 ENSMUSG00000032459 Mrps22 ENSMUST00000190150 - NO_TRANSLATION retained_intron ENSMUSG00000032459 Mrps22 ENSMUST00000035034 ENSMUSP00000035034 TRANSLATION protein_coding - CCDS23427.1 1 359.0 0.0 6.75 9.2 358.3 0.0 -4,0 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000034908 Sidt2 ENSMUST00000160138 ENSMUSP00000124945 TRANSLATION protein_coding start/stop - 3 176.0 0.0 0.0 0.0 56.6 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034908 Sidt2 ENSMUST00000160911 - NO_TRANSLATION retained_intron ENSMUSG00000034908 Sidt2 ENSMUST00000038488 ENSMUSP00000044290 TRANSLATION protein_coding - CCDS23138.1 1 832.0 0.0 0.0 7.7 943.9 17.0 2,-2 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000034908 Sidt2 ENSMUST00000160927 - NO_TRANSLATION retained_intron ENSMUSG00000034908 Sidt2 ENSMUST00000161606 ENSMUSP00000125660 TRANSLATION protein_coding start/stop - 5 221.0 0.0 0.0 0.0 91.5 5.0 -4,-7 0.0023 1 -2.0 MINOR ENSMUSG00000034908 Sidt2 ENSMUST00000162379 ENSMUSP00000124503 TRANSLATION nonsense_mediated_decay start - 3 139.0 0.0 0.0 0.0 142.0 5.0 -4,-7 0.0023 - -2.0 MINOR ENSMUSG00000034908 Sidt2 ENSMUST00000160618 ENSMUSP00000125037 TRANSLATION nonsense_mediated_decay start - 2 79.0 0.0 0.0 0.0 54.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034908 Sidt2 ENSMUST00000160598 - NO_TRANSLATION retained_intron ENSMUSG00000034908 Sidt2 ENSMUST00000161042 ENSMUSP00000124577 TRANSLATION protein_coding start/stop - 5 106.0 0.0 0.0 0.0 0.0 5.0 -1,-5 0.0025 - -2.0 MINOR ENSMUSG00000034908 Sidt2 ENSMUST00000162529 ENSMUSP00000125060 TRANSLATION protein_coding start/stop - 5 222.0 0.0 0.0 0.0 129.2 5.0 -4,-6 0.0023 1 -2.0 MINOR ENSMUSG00000034908 Sidt2 ENSMUST00000114573 ENSMUSP00000110220 TRANSLATION protein_coding - CCDS72225.1 1 853.0 0.0 0.0 3.8 943.5 17.0 2,-2 0.7128 4 6.812 MINOR ENSMUSG00000034908 Sidt2 ENSMUST00000162072 ENSMUSP00000124750 TRANSLATION protein_coding stop - 5 493.0 0.0 0.0 0.0 225.8 5.0 2,-2 0.0066 3 -2.0 MINOR ENSMUSG00000034908 Sidt2 ENSMUST00000159033 ENSMUSP00000125273 TRANSLATION protein_coding start/stop - 1 74.0 0.0 0.0 0.0 72.6 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000034908 Sidt2 ENSMUST00000160670 - NO_TRANSLATION retained_intron ENSMUSG00000041528 Rnf123 ENSMUST00000161673 - NO_TRANSLATION retained_intron ENSMUSG00000041528 Rnf123 ENSMUST00000160841 - NO_TRANSLATION retained_intron ENSMUSG00000041528 Rnf123 ENSMUST00000159136 - NO_TRANSLATION retained_intron ENSMUSG00000041528 Rnf123 ENSMUST00000162355 ENSMUSP00000125745 TRANSLATION protein_coding - CCDS81072.1 1 1320.0 8.0 4.86 4.5 129.2 0.0 -4,-2 0.9366 20 16.0 ALTERNATIVE:1 ENSMUSG00000041528 Rnf123 ENSMUST00000159526 - NO_TRANSLATION retained_intron ENSMUSG00000041528 Rnf123 ENSMUST00000160249 ENSMUSP00000124548 TRANSLATION protein_coding - CCDS52922.1 5 1314.0 8.0 4.86 4.5 129.2 0.0 -4,-2 1.0 20 16.0 PRINCIPAL:4 ENSMUSG00000041528 Rnf123 ENSMUST00000159306 ENSMUSP00000125695 TRANSLATION nonsense_mediated_decay start - 1 261.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 2 -2.0 MINOR ENSMUSG00000041528 Rnf123 ENSMUST00000174504 ENSMUSP00000134087 TRANSLATION protein_coding stop - 5 91.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000041528 Rnf123 ENSMUST00000162123 - NO_TRANSLATION retained_intron ENSMUSG00000041528 Rnf123 ENSMUST00000162152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041528 Rnf123 ENSMUST00000178267 ENSMUSP00000136953 TRANSLATION protein_coding - CCDS52922.1 5 1314.0 8.0 4.86 4.5 129.2 0.0 -4,-2 1.0 20 16.0 PRINCIPAL:4 ENSMUSG00000041528 Rnf123 ENSMUST00000160649 ENSMUSP00000125495 TRANSLATION protein_coding - CCDS52922.1 1 1314.0 8.0 4.86 4.5 129.2 0.0 -4,-2 1.0 20 16.0 PRINCIPAL:4 ENSMUSG00000041528 Rnf123 ENSMUST00000162753 ENSMUSP00000124824 TRANSLATION nonsense_mediated_decay start - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041528 Rnf123 ENSMUST00000159372 ENSMUSP00000123933 TRANSLATION protein_coding stop - 2 27.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0007 - -2.0 MINOR ENSMUSG00000041528 Rnf123 ENSMUST00000159523 - NO_TRANSLATION retained_intron ENSMUSG00000041528 Rnf123 ENSMUST00000161828 ENSMUSP00000125213 TRANSLATION protein_coding stop - 2 111.0 0.0 0.1 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000041528 Rnf123 ENSMUST00000162516 ENSMUSP00000124986 TRANSLATION protein_coding stop - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000032178 Ilf3 ENSMUST00000215169 ENSMUSP00000150586 TRANSLATION nonsense_mediated_decay start - 5 126.0 0.0 1.0 0.0 41.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032178 Ilf3 ENSMUST00000213518 ENSMUSP00000150280 TRANSLATION protein_coding - - 1 908.0 4.0 12.0225 1.4 458.6 0.0 -4,0 0.2794 23 12.123 MINOR ENSMUSG00000032178 Ilf3 ENSMUST00000067646 ENSMUSP00000065770 TRANSLATION protein_coding - CCDS40552.1 1 898.0 4.0 12.0225 10.7 458.6 0.0 -4,-7 0.7806 24 15.0 PRINCIPAL:3 ENSMUSG00000032178 Ilf3 ENSMUST00000214821 ENSMUSP00000149321 TRANSLATION nonsense_mediated_decay start - 5 74.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032178 Ilf3 ENSMUST00000214852 ENSMUSP00000150047 TRANSLATION protein_coding stop - 3 168.0 2.0 2.3325 0.0 68.1 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000032178 Ilf3 ENSMUST00000216892 ENSMUSP00000149786 TRANSLATION protein_coding - - 1 716.0 4.0 12.0225 2.5 458.6 0.0 -4,0 0.3826 18 12.465 MINOR ENSMUSG00000032178 Ilf3 ENSMUST00000214474 ENSMUSP00000148924 TRANSLATION protein_coding stop - 3 77.0 0.0 1.4125 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000032178 Ilf3 ENSMUST00000115414 ENSMUSP00000111074 TRANSLATION protein_coding - CCDS40553.1 1 703.0 4.0 12.0225 10.7 458.6 0.0 -4,-7 1.0 18 15.0 ALTERNATIVE:1 ENSMUSG00000032178 Ilf3 ENSMUST00000214200 - NO_TRANSLATION retained_intron ENSMUSG00000032178 Ilf3 ENSMUST00000213603 ENSMUSP00000149483 TRANSLATION protein_coding - - 5 911.0 4.0 12.0225 1.8 458.6 0.0 -4,0 0.323 24 12.246 MINOR ENSMUSG00000032178 Ilf3 ENSMUST00000214758 ENSMUSP00000151032 TRANSLATION protein_coding - - 5 911.0 4.0 12.0225 1.8 458.6 0.0 -4,0 0.323 24 12.246 MINOR ENSMUSG00000032178 Ilf3 ENSMUST00000214217 - NO_TRANSLATION retained_intron ENSMUSG00000032178 Ilf3 ENSMUST00000217476 - NO_TRANSLATION retained_intron ENSMUSG00000032178 Ilf3 ENSMUST00000217348 ENSMUSP00000149155 TRANSLATION protein_coding start - 2 177.0 0.0 2.0 0.0 52.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032178 Ilf3 ENSMUST00000215438 - NO_TRANSLATION retained_intron ENSMUSG00000032178 Ilf3 ENSMUST00000217498 ENSMUSP00000150164 TRANSLATION nonsense_mediated_decay start - 5 214.0 2.0 2.7525 0.0 98.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038895 Zfp653 ENSMUST00000216244 - NO_TRANSLATION retained_intron ENSMUSG00000038895 Zfp653 ENSMUST00000179605 ENSMUSP00000137064 TRANSLATION protein_coding - CCDS80968.1 1 623.0 20.0 3.5 0.1 61.7 0.0 -4,-5 0.3867 1 14.0 ALTERNATIVE:2 ENSMUSG00000038895 Zfp653 ENSMUST00000216916 - NO_TRANSLATION retained_intron ENSMUSG00000038895 Zfp653 ENSMUST00000043922 ENSMUSP00000045895 TRANSLATION protein_coding - CCDS22919.1 1 615.0 20.0 3.5 1.2 61.7 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:2 ENSMUSG00000032026 Rexo2 ENSMUST00000214929 - NO_TRANSLATION retained_intron ENSMUSG00000032026 Rexo2 ENSMUST00000213508 - NO_TRANSLATION retained_intron ENSMUSG00000032026 Rexo2 ENSMUST00000213895 ENSMUSP00000149774 TRANSLATION protein_coding stop - 3 140.0 0.0 3.55 0.0 42.6 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000032026 Rexo2 ENSMUST00000216624 - NO_TRANSLATION retained_intron ENSMUSG00000032026 Rexo2 ENSMUST00000034524 ENSMUSP00000034524 TRANSLATION protein_coding - CCDS23154.1 1 237.0 4.0 6.13 11.0 114.5 0.0 -4,0 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000032026 Rexo2 ENSMUST00000216142 - NO_TRANSLATION retained_intron ENSMUSG00000032026 Rexo2 ENSMUST00000213875 - NO_TRANSLATION retained_intron ENSMUSG00000032026 Rexo2 ENSMUST00000217037 ENSMUSP00000149784 TRANSLATION protein_coding - - 3 121.0 2.0 2.8 0.0 51.7 0.0 -4,0 0.0 1 4.232 MINOR ENSMUSG00000032026 Rexo2 ENSMUST00000214161 - NO_TRANSLATION retained_intron ENSMUSG00000032026 Rexo2 ENSMUST00000216470 ENSMUSP00000149074 TRANSLATION protein_coding - - 3 113.0 2.0 2.2175 0.1 44.7 0.0 -4,0 0.0 1 3.812 MINOR ENSMUSG00000004096 Cwc15 ENSMUST00000213913 ENSMUSP00000149476 TRANSLATION protein_coding - CCDS22823.1 3 229.0 0.0 3.0 25.9 257.6 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000004096 Cwc15 ENSMUST00000215143 ENSMUSP00000151148 TRANSLATION protein_coding stop - 3 79.0 0.0 2.0 0.0 85.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000004096 Cwc15 ENSMUST00000004200 ENSMUSP00000004200 TRANSLATION protein_coding - CCDS22823.1 1 229.0 0.0 3.0 25.9 257.6 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000004096 Cwc15 ENSMUST00000216619 - NO_TRANSLATION retained_intron ENSMUSG00000011114 Tbrg1 ENSMUST00000117654 ENSMUSP00000112600 TRANSLATION protein_coding - CCDS52771.1 1 406.0 0.0 3.8 8.9 150.0 0.0 -4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000011114 Tbrg1 ENSMUST00000134711 - NO_TRANSLATION retained_intron ENSMUSG00000011114 Tbrg1 ENSMUST00000142736 ENSMUSP00000150375 TRANSLATION nonsense_mediated_decay - - 2 201.0 0.0 0.5525 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000011114 Tbrg1 ENSMUST00000126062 - NO_TRANSLATION retained_intron ENSMUSG00000040524 Zfp609 ENSMUST00000160747 ENSMUSP00000123882 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0217 - -2.0 MINOR ENSMUSG00000040524 Zfp609 ENSMUST00000159878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040524 Zfp609 ENSMUST00000159109 ENSMUSP00000124089 TRANSLATION protein_coding - CCDS23297.2 5 1413.0 4.0 0.0 16.5 0.0 0.0 -4,-5 1.0 19 8.0 PRINCIPAL:1 ENSMUSG00000036030 Prtg ENSMUST00000184274 - NO_TRANSLATION retained_intron ENSMUSG00000036030 Prtg ENSMUST00000055535 ENSMUSP00000055815 TRANSLATION protein_coding - CCDS23331.1 1 1191.0 0.0 8.36 0.4 398.9 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032263 Bckdhb ENSMUST00000190166 ENSMUSP00000140598 TRANSLATION protein_coding - CCDS23378.1 1 322.0 1.0 8.25 6.7 271.7 0.0 -4,-5 0.7893 12 8.868 ALTERNATIVE:1 ENSMUSG00000032263 Bckdhb ENSMUST00000188200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032263 Bckdhb ENSMUST00000034801 ENSMUSP00000034801 TRANSLATION protein_coding - CCDS23378.1 1 322.0 1.0 8.25 6.7 271.7 0.0 -4,-5 0.7893 12 8.868 ALTERNATIVE:1 ENSMUSG00000032263 Bckdhb ENSMUST00000189819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032263 Bckdhb ENSMUST00000190637 ENSMUSP00000139684 TRANSLATION protein_coding - CCDS81045.1 1 390.0 1.0 8.65 6.2 272.2 0.0 -2,2 1.0 13 9.824 PRINCIPAL:3 ENSMUSG00000032263 Bckdhb ENSMUST00000186136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091735 Gpr62 ENSMUST00000164834 ENSMUSP00000129055 TRANSLATION protein_coding - CCDS52909.1 - 358.0 0.0 0.2 6.6 57.2 0.0 -2,-3 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000032067 Pts ENSMUST00000213640 - NO_TRANSLATION retained_intron ENSMUSG00000032067 Pts ENSMUST00000216197 - NO_TRANSLATION retained_intron ENSMUSG00000032067 Pts ENSMUST00000216201 - NO_TRANSLATION retained_intron ENSMUSG00000032067 Pts ENSMUST00000034570 ENSMUSP00000034570 TRANSLATION protein_coding - CCDS23164.1 1 144.0 7.0 4.49 5.1 121.7 0.0 -4,0 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000032067 Pts ENSMUST00000215416 ENSMUSP00000149552 TRANSLATION protein_coding - - 2 77.0 4.0 2.33 0.8 69.1 0.0 -4,-5 0.0132 3 7.95 MINOR ENSMUSG00000032067 Pts ENSMUST00000216836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032067 Pts ENSMUST00000214512 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032067 Pts ENSMUST00000214873 ENSMUSP00000150693 TRANSLATION protein_coding - - 5 77.0 4.0 2.33 0.8 69.1 0.0 -4,-5 0.0132 3 7.95 MINOR ENSMUSG00000032067 Pts ENSMUST00000214907 - NO_TRANSLATION retained_intron ENSMUSG00000032067 Pts ENSMUST00000217146 - NO_TRANSLATION retained_intron ENSMUSG00000032067 Pts ENSMUST00000213144 ENSMUSP00000149239 TRANSLATION protein_coding stop - 3 23.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032067 Pts ENSMUST00000214213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078934 Pate13 ENSMUST00000176153 ENSMUSP00000135716 TRANSLATION protein_coding - - 5 137.0 0.0 2.0 0.1 0.0 0.0 1,-3 0.7383 3 6.0 PRINCIPAL:1 ENSMUSG00000078934 Pate13 ENSMUST00000176049 - NO_TRANSLATION retained_intron ENSMUSG00000066839 Ecsit ENSMUST00000180180 ENSMUSP00000136247 TRANSLATION protein_coding - CCDS22920.1 1 435.0 0.0 0.0 2.8 501.9 0.0 -4,0 1.0 5 7.0 PRINCIPAL:1 ENSMUSG00000066839 Ecsit ENSMUST00000177967 ENSMUSP00000135936 TRANSLATION protein_coding stop - 5 223.0 0.0 0.0 0.0 339.5 0.0 -4,-5 0.0009 3 -2.0 MINOR ENSMUSG00000066839 Ecsit ENSMUST00000098937 ENSMUSP00000096537 TRANSLATION protein_coding - CCDS22920.1 1 435.0 0.0 0.0 2.8 501.9 0.0 -4,0 1.0 5 7.0 PRINCIPAL:1 ENSMUSG00000066839 Ecsit ENSMUST00000179422 ENSMUSP00000137424 TRANSLATION protein_coding - CCDS22920.1 1 435.0 0.0 0.0 2.8 501.9 0.0 -4,0 1.0 5 7.0 PRINCIPAL:1 ENSMUSG00000066839 Ecsit ENSMUST00000217445 - NO_TRANSLATION retained_intron ENSMUSG00000000168 Dlat ENSMUST00000126933 - NO_TRANSLATION retained_intron ENSMUSG00000000168 Dlat ENSMUST00000125919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000168 Dlat ENSMUST00000132455 - NO_TRANSLATION retained_intron ENSMUSG00000000168 Dlat ENSMUST00000155417 - NO_TRANSLATION retained_intron ENSMUSG00000000168 Dlat ENSMUST00000142275 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000168 Dlat ENSMUST00000034567 ENSMUSP00000034567 TRANSLATION protein_coding - CCDS23168.1 1 642.0 4.0 11.4 9.3 434.7 0.0 -4,-1 1.0 23 19.0 PRINCIPAL:1 ENSMUSG00000041624 Gucy1a2 ENSMUST00000115733 ENSMUSP00000111398 TRANSLATION protein_coding - CCDS40526.1 2 730.0 7.0 3.798 4.5 430.9 0.0 -4,-6 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000041624 Gucy1a2 ENSMUST00000213060 - NO_TRANSLATION retained_intron ENSMUSG00000041624 Gucy1a2 ENSMUST00000212705 - NO_TRANSLATION retained_intron ENSMUSG00000002820 Atg4d ENSMUST00000065005 ENSMUSP00000068450 TRANSLATION protein_coding - CCDS22899.1 1 474.0 0.0 3.41 8.3 348.1 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000002820 Atg4d ENSMUST00000217591 - NO_TRANSLATION retained_intron ENSMUSG00000002820 Atg4d ENSMUST00000215767 - NO_TRANSLATION retained_intron ENSMUSG00000002820 Atg4d ENSMUST00000216826 - NO_TRANSLATION retained_intron ENSMUSG00000002820 Atg4d ENSMUST00000217269 ENSMUSP00000150253 TRANSLATION nonsense_mediated_decay start - 2 100.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032226 Gcnt3 ENSMUST00000034751 ENSMUSP00000034751 TRANSLATION protein_coding - CCDS40678.1 1 437.0 19.0 1.0 10.3 205.7 0.0 -1,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000079334 Naa80 ENSMUST00000149638 ENSMUSP00000139004 TRANSLATION protein_coding,RT stop - 2 105.0 11.0 1.0 0.0 36.3 0.0 -4,-2 0.0053 - -2.0 MINOR ENSMUSG00000079334 Naa80 ENSMUST00000130053 ENSMUSP00000114490 TRANSLATION protein_coding stop - 2 204.0 11.0 1.0 0.0 36.3 0.0 -4,-6 0.0039 1 -2.0 MINOR ENSMUSG00000079334 Naa80 ENSMUST00000093785 ENSMUSP00000091300 TRANSLATION protein_coding - CCDS23498.1 1 314.0 19.0 1.4 4.6 37.2 0.0 -4,-6 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000079334 Naa80 ENSMUST00000139274 ENSMUSP00000138933 TRANSLATION protein_coding,RT stop - 2 105.0 11.0 1.0 0.0 36.3 0.0 -4,-2 0.0053 - -2.0 MINOR ENSMUSG00000079334 Naa80 ENSMUST00000127380 ENSMUSP00000116378 TRANSLATION protein_coding stop - 2 204.0 11.0 1.0 0.0 36.3 0.0 -4,-6 0.0039 1 -2.0 MINOR ENSMUSG00000079334 Naa80 ENSMUST00000122985 ENSMUSP00000122807 TRANSLATION protein_coding stop - 2 204.0 11.0 1.0 0.0 36.3 0.0 -4,-6 0.0039 1 -2.0 MINOR ENSMUSG00000079334 Naa80 ENSMUST00000139581 ENSMUSP00000122321 TRANSLATION protein_coding stop - 2 204.0 11.0 1.0 0.0 36.3 0.0 -4,-6 0.0039 1 -2.0 MINOR ENSMUSG00000032053 Pou2af1 ENSMUST00000034554 ENSMUSP00000034554 TRANSLATION protein_coding - CCDS23176.1 1 256.0 0.0 1.0 20.2 465.9 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032053 Pou2af1 ENSMUST00000214322 ENSMUSP00000149529 TRANSLATION protein_coding start - 3 150.0 0.0 0.0 0.0 229.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050901 Mtnr1b ENSMUST00000057920 ENSMUSP00000053086 TRANSLATION protein_coding - CCDS22841.1 1 364.0 0.0 1.8 4.0 159.3 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050901 Mtnr1b ENSMUST00000182947 ENSMUSP00000138524 TRANSLATION nonsense_mediated_decay - CCDS22841.1 2 364.0 0.0 1.8 4.0 159.3 7.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000036912 Piwil4 ENSMUST00000136399 ENSMUSP00000120851 TRANSLATION protein_coding start - 1 174.0 1.0 2.2 0.0 171.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000036912 Piwil4 ENSMUST00000115644 ENSMUSP00000111308 TRANSLATION protein_coding - - 5 911.0 8.0 11.8175 0.0 417.5 0.0 -4,0 0.8434 - 18.0 PRINCIPAL:1 ENSMUSG00000036912 Piwil4 ENSMUST00000076946 ENSMUSP00000076213 TRANSLATION protein_coding - CCDS22824.1 2 878.0 8.0 10.3175 0.0 359.4 0.0 -4,0 0.1398 - 11.514 MINOR ENSMUSG00000036912 Piwil4 ENSMUST00000115643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032232 Cgnl1 ENSMUST00000136044 - NO_TRANSLATION retained_intron ENSMUSG00000032232 Cgnl1 ENSMUST00000121322 ENSMUSP00000113917 TRANSLATION protein_coding - - 5 1226.0 0.0 2.475 0.0 119.6 0.0 -4,-5 0.0905 33 11.958 MINOR ENSMUSG00000032232 Cgnl1 ENSMUST00000122065 ENSMUSP00000112479 TRANSLATION protein_coding - CCDS23328.1 1 1297.0 0.0 2.475 6.8 120.3 0.0 -4,-5 1.0 36 14.0 PRINCIPAL:1 ENSMUSG00000032232 Cgnl1 ENSMUST00000152224 - NO_TRANSLATION retained_intron ENSMUSG00000032232 Cgnl1 ENSMUST00000072899 ENSMUSP00000072672 TRANSLATION protein_coding - CCDS23328.1 5 1297.0 0.0 2.475 6.8 120.3 0.0 -4,-5 1.0 36 14.0 PRINCIPAL:1 ENSMUSG00000032232 Cgnl1 ENSMUST00000146567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039452 Snx22 ENSMUST00000214332 - NO_TRANSLATION retained_intron ENSMUSG00000039452 Snx22 ENSMUST00000044711 ENSMUSP00000044389 TRANSLATION protein_coding - CCDS40671.1 1 192.0 0.0 3.5 3.6 55.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032536 Trak1 ENSMUST00000211187 ENSMUSP00000147624 TRANSLATION protein_coding - - 5 731.0 0.0 0.0 0.1 611.3 0.0 -4,-5 0.0275 5 0.8 MINOR ENSMUSG00000032536 Trak1 ENSMUST00000209390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032536 Trak1 ENSMUST00000210636 ENSMUSP00000148092 TRANSLATION protein_coding - - 1 256.0 0.0 0.0 0.0 277.5 0.0 -4,-2 0.0 3 0.0 MINOR ENSMUSG00000032536 Trak1 ENSMUST00000045903 ENSMUSP00000044482 TRANSLATION protein_coding - CCDS40810.1 1 939.0 0.0 0.0 0.4 681.8 0.0 -4,-2 1.0 10 2.0 PRINCIPAL:2 ENSMUSG00000032536 Trak1 ENSMUST00000211439 ENSMUSP00000148026 TRANSLATION protein_coding - - 1 524.0 0.0 0.0 0.0 592.3 0.0 -4,-5 0.1096 5 0.8 MINOR ENSMUSG00000032536 Trak1 ENSMUST00000211149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032536 Trak1 ENSMUST00000209211 ENSMUSP00000147805 TRANSLATION nonsense_mediated_decay - - 5 54.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000032536 Trak1 ENSMUST00000238988 ENSMUSP00000158925 TRANSLATION protein_coding - - - 968.0 0.0 0.0 0.0 681.8 0.0 -4,-7 0.2761 10 2.0 ALTERNATIVE:2 ENSMUSG00000032536 Trak1 ENSMUST00000210798 ENSMUSP00000147646 TRANSLATION protein_coding - - 1 606.0 0.0 0.0 0.0 593.6 0.0 -4,-5 0.11 6 0.8 MINOR ENSMUSG00000032536 Trak1 ENSMUST00000211301 ENSMUSP00000147604 TRANSLATION nonsense_mediated_decay - - 1 560.0 0.0 0.0 0.0 593.6 0.0 -4,-5 0.0133 5 -2.0 MINOR ENSMUSG00000032536 Trak1 ENSMUST00000211699 - NO_TRANSLATION retained_intron ENSMUSG00000032536 Trak1 ENSMUST00000209446 ENSMUSP00000148017 TRANSLATION protein_coding start - 3 234.0 0.0 0.0 0.0 147.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000032536 Trak1 ENSMUST00000209306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032536 Trak1 ENSMUST00000210351 ENSMUSP00000147571 TRANSLATION protein_coding stop - 3 241.0 0.0 0.0 0.0 308.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032536 Trak1 ENSMUST00000209995 ENSMUSP00000147885 TRANSLATION protein_coding stop - 2 24.0 0.0 0.0 0.0 38.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032417 Rwdd2a ENSMUST00000185566 ENSMUSP00000139930 TRANSLATION protein_coding - CCDS23382.1 2 292.0 0.0 1.5 22.7 96.0 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000032417 Rwdd2a ENSMUST00000179212 ENSMUSP00000137392 TRANSLATION protein_coding - CCDS23382.1 1 292.0 0.0 1.5 22.7 96.0 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000032417 Rwdd2a ENSMUST00000034988 ENSMUSP00000034988 TRANSLATION protein_coding - CCDS23382.1 1 292.0 0.0 1.5 22.7 96.0 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000051234 Rnf7 ENSMUST00000057500 ENSMUSP00000052856 TRANSLATION protein_coding - CCDS40730.1 1 113.0 15.0 2.75 30.9 76.2 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000051234 Rnf7 ENSMUST00000071301 ENSMUSP00000108581 TRANSLATION protein_coding - CCDS81056.1 2 90.0 2.0 1.0 14.0 23.1 0.0 -4,-5 0.3971 - 5.742 MINOR ENSMUSG00000051234 Rnf7 ENSMUST00000128955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036091 Hyal3 ENSMUST00000149487 ENSMUSP00000117845 TRANSLATION protein_coding stop - 5 328.0 0.0 1.75 0.0 334.8 0.0 3,-2 0.0007 - -2.0 MINOR ENSMUSG00000036091 Hyal3 ENSMUST00000148440 ENSMUSP00000119499 TRANSLATION protein_coding - CCDS23499.1 5 412.0 0.0 3.75 0.4 424.6 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036091 Hyal3 ENSMUST00000040059 ENSMUSP00000042667 TRANSLATION protein_coding - CCDS23499.1 1 412.0 0.0 3.75 0.4 424.6 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037419 Endod1 ENSMUST00000167549 ENSMUSP00000127751 TRANSLATION protein_coding - CCDS22821.1 1 501.0 0.0 0.6 5.5 0.0 0.0 3,-2 1.0 11 8.0 PRINCIPAL:1 ENSMUSG00000037419 Endod1 ENSMUST00000213403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037419 Endod1 ENSMUST00000214236 ENSMUSP00000149823 TRANSLATION protein_coding - - 3 104.0 0.0 0.6 0.0 0.0 0.0 3,-2 0.1146 5 6.0 MINOR ENSMUSG00000099564 Gm28729 ENSMUST00000190704 ENSMUSP00000148097 TRANSLATION protein_coding - - 5 409.0 0.0 3.415 1.1 0.0 0.0 -4,-7 0.673 - 7.0 PRINCIPAL:1 ENSMUSG00000047897 Ripply2 ENSMUST00000188187 - NO_TRANSLATION retained_intron ENSMUSG00000047897 Ripply2 ENSMUST00000058846 ENSMUSP00000055369 TRANSLATION protein_coding - CCDS40715.1 1 128.0 0.0 1.0 0.4 123.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031991 Spata19 ENSMUST00000215658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031991 Spata19 ENSMUST00000215326 - NO_TRANSLATION retained_intron ENSMUSG00000031991 Spata19 ENSMUST00000214240 - NO_TRANSLATION retained_intron ENSMUSG00000031991 Spata19 ENSMUST00000214287 ENSMUSP00000149525 TRANSLATION protein_coding - - 1 119.0 0.0 0.0 0.0 212.5 0.0 -4,-5 0.0004 1 3.654 MINOR ENSMUSG00000031991 Spata19 ENSMUST00000214158 ENSMUSP00000149139 TRANSLATION protein_coding - - 5 97.0 0.0 0.0 0.0 186.8 0.0 -4,-5 0.0 1 2.112 MINOR ENSMUSG00000031991 Spata19 ENSMUST00000034473 ENSMUSP00000034473 TRANSLATION protein_coding - CCDS22941.1 1 154.0 0.0 0.0 6.4 251.6 0.0 -3,-7 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000032044 Rpusd4 ENSMUST00000146571 - NO_TRANSLATION retained_intron ENSMUSG00000032044 Rpusd4 ENSMUST00000130552 - NO_TRANSLATION retained_intron ENSMUSG00000032044 Rpusd4 ENSMUST00000034543 ENSMUSP00000034543 TRANSLATION protein_coding - CCDS22962.1 1 377.0 2.0 7.0 2.6 118.6 0.0 -4,0 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000032044 Rpusd4 ENSMUST00000144582 ENSMUSP00000120327 TRANSLATION nonsense_mediated_decay start - 3 35.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032431 Crtap ENSMUST00000151377 - NO_TRANSLATION retained_intron ENSMUSG00000032431 Crtap ENSMUST00000084881 ENSMUSP00000081941 TRANSLATION protein_coding - CCDS23592.1 1 400.0 0.0 5.85 1.3 0.0 0.0 1,-2 1.0 8 7.0 PRINCIPAL:1 ENSMUSG00000074259 Gramd2a ENSMUST00000098661 ENSMUSP00000096258 TRANSLATION protein_coding - CCDS52818.1 1 312.0 0.0 1.275 0.0 70.1 1.0 -4,-6 0.555 1 8.0 ALTERNATIVE:2 ENSMUSG00000074259 Gramd2a ENSMUST00000133822 - NO_TRANSLATION retained_intron ENSMUSG00000074259 Gramd2a ENSMUST00000128944 ENSMUSP00000116879 TRANSLATION protein_coding - - 1 320.0 0.0 1.275 0.3 70.1 1.0 -4,-7 0.7954 1 8.0 PRINCIPAL:4 ENSMUSG00000074259 Gramd2a ENSMUST00000143224 - NO_TRANSLATION retained_intron ENSMUSG00000074259 Gramd2a ENSMUST00000129129 ENSMUSP00000118901 TRANSLATION protein_coding start - 5 200.0 0.0 0.525 0.0 0.0 1.0 -4,-2 0.0051 1 -2.0 MINOR ENSMUSG00000074259 Gramd2a ENSMUST00000123914 ENSMUSP00000114530 TRANSLATION protein_coding stop - 5 245.0 0.0 1.275 0.0 70.1 0.0 -4,-5 0.0625 1 -2.0 MINOR ENSMUSG00000053040 Aph1c ENSMUST00000057261 ENSMUSP00000056476 TRANSLATION protein_coding - - 1 208.0 0.0 4.75 0.0 208.4 5.0 -4,-7 0.0049 - 3.846 MINOR ENSMUSG00000053040 Aph1c ENSMUST00000169282 ENSMUSP00000130359 TRANSLATION protein_coding - CCDS23308.1 1 258.0 0.0 6.25 20.5 294.3 7.0 0,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000078116 Or7g16 ENSMUST00000104914 ENSMUSP00000100514 TRANSLATION protein_coding - CCDS40541.1 - 312.0 0.0 1.0 7.6 164.6 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000078116 Or7g16 ENSMUST00000215380 ENSMUSP00000148853 TRANSLATION protein_coding - CCDS40541.1 3 312.0 0.0 1.0 7.6 164.6 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000053310 Nrgn ENSMUST00000065668 ENSMUSP00000070113 TRANSLATION protein_coding - CCDS40585.1 1 78.0 0.0 0.8 3.6 25.4 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000053310 Nrgn ENSMUST00000182070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018620 Mmp20 ENSMUST00000034487 ENSMUSP00000034487 TRANSLATION protein_coding - CCDS22809.1 1 482.0 27.0 6.504 12.5 354.8 0.0 2,-1 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000033688 Inhca ENSMUST00000142540 ENSMUSP00000116504 TRANSLATION protein_coding stop - 3 38.0 0.0 1.0 0.0 27.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033688 Inhca ENSMUST00000150524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033688 Inhca ENSMUST00000154357 ENSMUSP00000123519 TRANSLATION protein_coding start/stop - 3 242.0 12.0 5.08 0.0 192.3 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000033688 Inhca ENSMUST00000035163 ENSMUSP00000035163 TRANSLATION protein_coding - CCDS23452.1 1 700.0 23.0 15.49 5.9 722.2 0.0 4,-1 1.0 29 20.0 PRINCIPAL:1 ENSMUSG00000033688 Inhca ENSMUST00000151073 - NO_TRANSLATION retained_intron ENSMUSG00000033688 Inhca ENSMUST00000123530 ENSMUSP00000115867 TRANSLATION protein_coding - - 5 622.0 22.0 13.49 1.1 667.3 0.0 4,-1 0.0614 28 10.078 MINOR ENSMUSG00000079681 Zglp1 ENSMUST00000216967 - NO_TRANSLATION retained_intron ENSMUSG00000079681 Zglp1 ENSMUST00000115494 ENSMUSP00000111157 TRANSLATION protein_coding - CCDS40549.1 1 266.0 6.0 1.6 0.3 53.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000096393 Fam240a ENSMUST00000177678 ENSMUSP00000136900 TRANSLATION protein_coding - CCDS57707.1 2 97.0 0.0 1.8 0.0 0.0 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096167 Or8b39 ENSMUST00000213091 ENSMUSP00000148346 TRANSLATION protein_coding stop - - 101.0 0.0 1.0 0.0 37.0 2.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000096167 Or8b39 ENSMUST00000074681 ENSMUSP00000074248 TRANSLATION protein_coding - CCDS22996.1 - 309.0 0.0 2.0 8.7 166.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096167 Or8b39 ENSMUST00000212502 ENSMUSP00000148361 TRANSLATION protein_coding - CCDS22996.1 5 309.0 0.0 2.0 8.7 166.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031997 Trpc6 ENSMUST00000050433 ENSMUSP00000057965 TRANSLATION protein_coding - CCDS22815.1 1 930.0 0.0 8.4375 7.8 248.8 7.0 -4,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000031997 Trpc6 ENSMUST00000214596 ENSMUSP00000149686 TRANSLATION protein_coding - - 1 852.0 0.0 7.4375 0.0 215.7 6.0 -4,-2 0.0104 2 8.016 MINOR ENSMUSG00000031997 Trpc6 ENSMUST00000217462 ENSMUSP00000150193 TRANSLATION protein_coding - - 1 406.0 0.0 2.2 0.0 127.4 0.0 -4,-2 0.0005 - 0.0 MINOR ENSMUSG00000059473 Or10g9 ENSMUST00000080835 ENSMUSP00000079648 TRANSLATION protein_coding - CCDS23070.1 - 311.0 0.0 1.0 12.9 194.5 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059473 Or10g9 ENSMUST00000215523 ENSMUSP00000148903 TRANSLATION protein_coding - CCDS23070.1 5 311.0 0.0 1.0 12.9 194.5 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045994 B3gat1 ENSMUST00000159527 - NO_TRANSLATION retained_intron ENSMUSG00000045994 B3gat1 ENSMUST00000160899 ENSMUSP00000124067 TRANSLATION protein_coding - CCDS80970.1 1 347.0 18.0 2.75 20.6 252.4 2.0 -4,-7 0.9102 1 20.536 MINOR ENSMUSG00000045994 B3gat1 ENSMUST00000161115 ENSMUSP00000125700 TRANSLATION protein_coding - CCDS22936.1 1 334.0 18.0 2.75 31.9 252.4 2.0 -1,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000045994 B3gat1 ENSMUST00000161431 ENSMUSP00000124752 TRANSLATION protein_coding - CCDS22936.1 5 334.0 18.0 2.75 31.9 252.4 2.0 -1,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000045994 B3gat1 ENSMUST00000159799 ENSMUSP00000124438 TRANSLATION protein_coding - CCDS80970.1 1 347.0 18.0 2.75 20.6 252.4 2.0 -4,-7 0.9102 1 20.536 MINOR ENSMUSG00000045994 B3gat1 ENSMUST00000115269 ENSMUSP00000110924 TRANSLATION protein_coding - CCDS80970.1 1 347.0 18.0 2.75 20.6 252.4 2.0 -4,-7 0.9102 1 20.536 MINOR ENSMUSG00000049098 Or8b3 ENSMUST00000056364 ENSMUSP00000051933 TRANSLATION protein_coding - CCDS23008.1 2 317.0 0.0 1.0 9.6 161.7 4.0 -4,-6 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000049098 Or8b3 ENSMUST00000214648 ENSMUSP00000149480 TRANSLATION protein_coding - - 2 314.0 0.0 1.0 7.8 161.7 4.0 -4,-7 0.7841 - 10.373 ALTERNATIVE:1 ENSMUSG00000041268 Dmxl2 ENSMUST00000118163 ENSMUSP00000113705 TRANSLATION protein_coding - CCDS52799.1 5 3054.0 0.0 2.12 2.9 284.2 0.0 -4,-5 1.0 89 9.0 PRINCIPAL:2 ENSMUSG00000041268 Dmxl2 ENSMUST00000154092 - NO_TRANSLATION retained_intron ENSMUSG00000041268 Dmxl2 ENSMUST00000127880 ENSMUSP00000122293 TRANSLATION protein_coding stop - 1 1310.0 0.0 0.0 0.0 35.7 0.0 -4,-5 0.019 38 -2.0 MINOR ENSMUSG00000041268 Dmxl2 ENSMUST00000118600 ENSMUSP00000113693 TRANSLATION protein_coding - - 5 3032.0 0.0 2.12 2.2 284.2 0.0 -4,-5 0.6822 90 8.632 ALTERNATIVE:2 ENSMUSG00000041268 Dmxl2 ENSMUST00000123709 ENSMUSP00000119959 TRANSLATION protein_coding start - 5 2235.0 0.0 2.12 0.0 284.2 0.0 -4,-5 0.2673 68 -2.0 MINOR ENSMUSG00000041268 Dmxl2 ENSMUST00000128865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041268 Dmxl2 ENSMUST00000144736 - NO_TRANSLATION retained_intron ENSMUSG00000041268 Dmxl2 ENSMUST00000149709 - NO_TRANSLATION retained_intron ENSMUSG00000038233 Gask1a ENSMUST00000214536 ENSMUSP00000150724 TRANSLATION protein_coding - - 1 527.0 0.0 0.0 0.0 381.6 0.0 0,-4 0.0029 - 0.0 MINOR ENSMUSG00000038233 Gask1a ENSMUST00000213773 ENSMUSP00000151175 TRANSLATION protein_coding - CCDS52969.1 1 546.0 0.0 0.0 0.0 490.2 0.0 2,-1 0.5604 - 2.0 ALTERNATIVE:2 ENSMUSG00000038233 Gask1a ENSMUST00000215990 ENSMUSP00000149755 TRANSLATION protein_coding - - 1 562.0 0.0 0.0 0.0 490.2 0.0 0,-4 0.7656 - 2.0 PRINCIPAL:4 ENSMUSG00000038233 Gask1a ENSMUST00000043011 ENSMUSP00000040221 TRANSLATION protein_coding - CCDS52969.1 1 546.0 0.0 0.0 0.0 490.2 0.0 2,-1 0.5604 - 2.0 ALTERNATIVE:2 ENSMUSG00000079259 Trim71 ENSMUST00000111816 ENSMUSP00000107447 TRANSLATION protein_coding - CCDS40793.1 1 855.0 10.0 1.5 1.1 306.7 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000038750 Omt2b ENSMUST00000187890 - NO_TRANSLATION retained_intron ENSMUSG00000038750 Omt2b ENSMUST00000189243 ENSMUSP00000140732 TRANSLATION nonsense_mediated_decay start - 2 91.0 0.0 2.1 0.0 0.0 1.0 -4,-5 0.0211 - -2.0 MINOR ENSMUSG00000038750 Omt2b ENSMUST00000187667 ENSMUSP00000139767 TRANSLATION protein_coding - CCDS52869.1 1 119.0 0.0 2.6 0.0 0.0 1.0 -4,-6 0.9981 - 6.0 PRINCIPAL:1 ENSMUSG00000038750 Omt2b ENSMUST00000043734 ENSMUSP00000036132 TRANSLATION protein_coding - CCDS52869.1 2 119.0 0.0 2.6 0.0 0.0 1.0 -4,-6 0.9981 - 6.0 PRINCIPAL:1 ENSMUSG00000038750 Omt2b ENSMUST00000186336 ENSMUSP00000140239 TRANSLATION protein_coding stop - 2 56.0 0.0 1.1 0.0 0.0 0.0 -4,-7 0.0184 - -2.0 MINOR ENSMUSG00000074472 Zfp872 ENSMUST00000091508 ENSMUSP00000089089 TRANSLATION protein_coding start - 5 464.0 48.0 2.55 0.0 299.2 0.0 -4,-5 0.4243 - -2.0 MINOR ENSMUSG00000074472 Zfp872 ENSMUST00000178901 ENSMUSP00000136074 TRANSLATION protein_coding - CCDS57663.1 1 465.0 48.0 2.55 0.0 299.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000074472 Zfp872 ENSMUST00000217301 ENSMUSP00000149642 TRANSLATION protein_coding stop - 3 207.0 12.0 1.45 0.0 138.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000032062 2310030G06Rik ENSMUST00000215877 - NO_TRANSLATION retained_intron ENSMUSG00000032062 2310030G06Rik ENSMUST00000239417 ENSMUSP00000159377 TRANSLATION protein_coding - CCDS23170.1 - 141.0 0.0 1.0 0.3 210.0 0.0 -4,-5 0.3614 3 12.0 MINOR ENSMUSG00000032062 2310030G06Rik ENSMUST00000034564 ENSMUSP00000034564 TRANSLATION protein_coding - - 1 127.0 0.0 1.0 4.5 210.0 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000032534 Cep63 ENSMUST00000162960 - NO_TRANSLATION retained_intron ENSMUSG00000032534 Cep63 ENSMUST00000215253 ENSMUSP00000150702 TRANSLATION protein_coding start/stop - 5 181.0 0.0 0.0 0.0 153.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032534 Cep63 ENSMUST00000191074 - NO_TRANSLATION retained_intron ENSMUSG00000032534 Cep63 ENSMUST00000162655 ENSMUSP00000125621 TRANSLATION protein_coding - - 5 538.0 0.0 1.0 7.3 364.8 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000032534 Cep63 ENSMUST00000159100 ENSMUSP00000124836 TRANSLATION nonsense_mediated_decay - - 3 78.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032534 Cep63 ENSMUST00000161645 ENSMUSP00000123954 TRANSLATION protein_coding stop - 3 88.0 0.0 0.0 0.0 100.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032534 Cep63 ENSMUST00000093791 ENSMUSP00000091306 TRANSLATION protein_coding - CCDS40743.1 1 758.0 0.0 1.0 0.0 364.8 0.0 -4,-6 0.3661 9 12.0 MINOR ENSMUSG00000032534 Cep63 ENSMUST00000216281 ENSMUSP00000149157 TRANSLATION protein_coding - - 1 596.0 0.0 1.0 0.0 364.8 0.0 -4,-6 0.0861 10 12.0 MINOR ENSMUSG00000032534 Cep63 ENSMUST00000213636 ENSMUSP00000150899 TRANSLATION protein_coding stop - 5 139.0 0.0 0.0 0.0 187.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032534 Cep63 ENSMUST00000162297 ENSMUSP00000125705 TRANSLATION protein_coding stop - 3 71.0 0.0 0.0 0.0 77.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032534 Cep63 ENSMUST00000160512 - NO_TRANSLATION retained_intron ENSMUSG00000032495 Lrrc2 ENSMUST00000196834 ENSMUSP00000142360 TRANSLATION protein_coding stop - 3 184.0 0.0 3.8 0.0 32.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000032495 Lrrc2 ENSMUST00000196598 ENSMUSP00000143319 TRANSLATION nonsense_mediated_decay start - 3 61.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000032495 Lrrc2 ENSMUST00000035076 ENSMUSP00000035076 TRANSLATION protein_coding - CCDS23580.1 1 371.0 0.0 5.7 18.7 61.3 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000044534 Ackr2 ENSMUST00000214340 ENSMUSP00000148966 TRANSLATION protein_coding - CCDS23640.1 1 378.0 0.0 2.0 6.8 135.2 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044534 Ackr2 ENSMUST00000215664 ENSMUSP00000151092 TRANSLATION protein_coding stop - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044534 Ackr2 ENSMUST00000050327 ENSMUSP00000050119 TRANSLATION protein_coding - CCDS23640.1 1 378.0 0.0 2.0 6.8 135.2 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044534 Ackr2 ENSMUST00000216326 ENSMUSP00000150219 TRANSLATION protein_coding stop - 1 67.0 0.0 1.0 0.0 0.0 2.0 -4,-6 0.0002 - -2.0 MINOR ENSMUSG00000032099 Pate4 ENSMUST00000034610 ENSMUSP00000034610 TRANSLATION protein_coding - CCDS22967.1 1 99.0 0.0 2.75 0.4 0.0 0.0 2,-3 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000031925 Maml2 ENSMUST00000159294 ENSMUSP00000124083 TRANSLATION protein_coding - - 5 1170.0 0.0 0.6 0.0 71.2 0.0 -4,-5 0.9966 4 12.0 PRINCIPAL:1 ENSMUSG00000031925 Maml2 ENSMUST00000034401 ENSMUSP00000034401 TRANSLATION protein_coding - CCDS52723.1 1 414.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1848 1 0.0 MINOR ENSMUSG00000031925 Maml2 ENSMUST00000177755 ENSMUSP00000136866 TRANSLATION protein_coding - CCDS52723.1 1 414.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1848 1 0.0 MINOR ENSMUSG00000013584 Aldh1a2 ENSMUST00000034723 ENSMUSP00000034723 TRANSLATION protein_coding - CCDS52852.1 1 518.0 27.0 12.25 31.2 617.7 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000067399 Trim43c ENSMUST00000186363 ENSMUSP00000139715 TRANSLATION protein_coding - - 1 445.0 8.0 2.345 0.0 29.6 0.0 -4,-5 0.7419 - 14.0 PRINCIPAL:4 ENSMUSG00000067399 Trim43c ENSMUST00000163255 ENSMUSP00000129255 TRANSLATION protein_coding - CCDS52883.1 1 446.0 8.0 2.345 0.0 29.6 0.0 -4,-5 0.7118 - 14.0 ALTERNATIVE:2 ENSMUSG00000032405 Pias1 ENSMUST00000098651 ENSMUSP00000096248 TRANSLATION protein_coding - CCDS40665.1 1 651.0 4.0 6.83 19.1 205.2 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000032405 Pias1 ENSMUST00000215455 - NO_TRANSLATION retained_intron ENSMUSG00000032405 Pias1 ENSMUST00000215501 ENSMUSP00000149235 TRANSLATION protein_coding start - 1 85.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032405 Pias1 ENSMUST00000214830 ENSMUSP00000150834 TRANSLATION protein_coding - - 1 577.0 4.0 6.83 0.0 205.2 0.0 -4,-5 0.0282 7 16.0 MINOR ENSMUSG00000032405 Pias1 ENSMUST00000216209 ENSMUSP00000149590 TRANSLATION protein_coding stop - 3 222.0 0.0 2.75 0.0 75.6 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000032377 Plscr4 ENSMUST00000143866 - NO_TRANSLATION retained_intron ENSMUSG00000032377 Plscr4 ENSMUST00000034941 ENSMUSP00000034941 TRANSLATION protein_coding - CCDS23407.1 1 326.0 0.0 0.0 4.2 279.9 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000040111 Gramd1b ENSMUST00000155265 - NO_TRANSLATION retained_intron ENSMUSG00000040111 Gramd1b ENSMUST00000165104 ENSMUSP00000130050 TRANSLATION protein_coding - CCDS23081.1 5 878.0 0.0 5.439 12.0 221.8 3.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000040111 Gramd1b ENSMUST00000239052 ENSMUSP00000159027 TRANSLATION protein_coding stop - - 133.0 0.0 1.35 0.0 69.3 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000040111 Gramd1b ENSMUST00000150977 - NO_TRANSLATION retained_intron ENSMUSG00000040111 Gramd1b ENSMUST00000137189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040111 Gramd1b ENSMUST00000119373 ENSMUSP00000112489 TRANSLATION protein_coding - - 1 761.0 0.0 5.439 1.1 221.8 3.0 -4,-2 0.2732 17 12.027 MINOR ENSMUSG00000040111 Gramd1b ENSMUST00000121357 ENSMUSP00000112564 TRANSLATION protein_coding - - 1 734.0 0.0 5.439 1.1 221.8 1.0 -4,-1 0.264 17 12.027 MINOR ENSMUSG00000040111 Gramd1b ENSMUST00000137454 ENSMUSP00000116871 TRANSLATION protein_coding start - 1 489.0 0.0 3.6 0.0 127.1 3.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000040111 Gramd1b ENSMUST00000216821 ENSMUSP00000148890 TRANSLATION protein_coding - - 5 734.0 0.0 5.439 5.0 221.8 3.0 -4,-1 0.4281 17 13.092 MINOR ENSMUSG00000040111 Gramd1b ENSMUST00000045682 ENSMUSP00000048126 TRANSLATION protein_coding - CCDS23081.1 1 878.0 0.0 5.439 12.0 221.8 3.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000040111 Gramd1b ENSMUST00000129940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040111 Gramd1b ENSMUST00000148170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040111 Gramd1b ENSMUST00000118159 ENSMUSP00000112417 TRANSLATION protein_coding - - 5 698.0 0.0 5.439 3.8 221.8 1.0 -4,-5 0.2665 17 12.765 MINOR ENSMUSG00000040111 Gramd1b ENSMUST00000153029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040111 Gramd1b ENSMUST00000211853 ENSMUSP00000148499 TRANSLATION protein_coding - - 5 767.0 0.0 5.439 0.0 221.8 1.0 -4,-2 0.099 17 12.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000184196 - NO_TRANSLATION retained_intron ENSMUSG00000032228 Tcf12 ENSMUST00000184783 ENSMUSP00000139364 TRANSLATION protein_coding - CCDS23329.1 5 706.0 0.0 2.61 15.7 39.9 0.0 -4,-5 1.0 12 11.844 PRINCIPAL:4 ENSMUSG00000032228 Tcf12 ENSMUST00000184072 ENSMUSP00000139284 TRANSLATION protein_coding start/stop - 5 279.0 0.0 0.2 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000185117 ENSMUSP00000138925 TRANSLATION protein_coding - CCDS72272.1 5 682.0 0.0 2.61 13.7 39.9 0.0 -4,-5 0.9508 12 11.32 ALTERNATIVE:1 ENSMUSG00000032228 Tcf12 ENSMUST00000184029 ENSMUSP00000138807 TRANSLATION protein_coding start - 2 108.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0003 - -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000184448 ENSMUSP00000139334 TRANSLATION protein_coding stop - 1 477.0 0.0 1.33 0.0 39.9 0.0 -4,-5 0.024 5 -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000184806 - NO_TRANSLATION retained_intron ENSMUSG00000032228 Tcf12 ENSMUST00000183647 ENSMUSP00000139139 TRANSLATION nonsense_mediated_decay start - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000184107 ENSMUSP00000139248 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 1.28 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000184770 - NO_TRANSLATION retained_intron ENSMUSG00000032228 Tcf12 ENSMUST00000183404 ENSMUSP00000139365 TRANSLATION protein_coding - CCDS23329.1 1 706.0 0.0 2.61 15.7 39.9 0.0 -4,-5 1.0 12 11.844 PRINCIPAL:4 ENSMUSG00000032228 Tcf12 ENSMUST00000183492 ENSMUSP00000138939 TRANSLATION protein_coding stop - 3 127.0 0.0 1.28 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000183594 ENSMUSP00000138952 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 1.28 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000183992 ENSMUSP00000139084 TRANSLATION protein_coding stop - 1 523.0 0.0 1.28 0.0 0.0 0.0 -4,-5 0.0009 11 -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000183918 ENSMUSP00000138978 TRANSLATION protein_coding - CCDS72271.1 1 536.0 0.0 1.33 16.3 39.9 0.0 -4,-5 0.8819 6 9.06 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000184523 ENSMUSP00000138832 TRANSLATION protein_coding stop - 5 666.0 0.0 2.61 0.0 39.9 0.0 -4,-5 0.041 9 -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000184416 ENSMUSP00000139008 TRANSLATION nonsense_mediated_decay start - 3 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000184867 ENSMUSP00000139233 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 1.28 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032228 Tcf12 ENSMUST00000183784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032228 Tcf12 ENSMUST00000034755 ENSMUSP00000034755 TRANSLATION protein_coding - CCDS72272.1 5 682.0 0.0 2.61 13.7 39.9 0.0 -4,-5 0.9508 12 11.32 ALTERNATIVE:1 ENSMUSG00000032228 Tcf12 ENSMUST00000184378 ENSMUSP00000139268 TRANSLATION nonsense_mediated_decay start - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000094745 Or8g34 ENSMUST00000214818 ENSMUSP00000151116 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 11.4 176.4 6.0 -4,-5 0.8698 - 11.0 ALTERNATIVE:1 ENSMUSG00000094745 Or8g34 ENSMUST00000080329 ENSMUSP00000079205 TRANSLATION protein_coding - CCDS23046.1 - 314.0 0.0 1.0 11.4 176.4 6.0 -4,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000025784 Clec3b ENSMUST00000026890 ENSMUSP00000026890 TRANSLATION protein_coding - CCDS23656.1 1 202.0 12.0 2.2 9.0 64.4 0.0 4,-1 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000032440 Tgfbr2 ENSMUST00000061101 ENSMUSP00000062333 TRANSLATION protein_coding - CCDS23601.1 1 592.0 14.0 6.0 5.0 264.3 1.0 0,-4 0.7886 9 19.347 MINOR ENSMUSG00000032440 Tgfbr2 ENSMUST00000035014 ENSMUSP00000035014 TRANSLATION protein_coding - CCDS23602.1 1 567.0 14.0 6.0 9.9 264.3 1.0 0,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000050578 Mmp13 ENSMUST00000015394 ENSMUSP00000015394 TRANSLATION protein_coding - CCDS22803.1 1 472.0 29.0 8.6 20.2 406.9 0.0 4,-1 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000049719 Prss46 ENSMUST00000176403 ENSMUSP00000135787 TRANSLATION protein_coding - CCDS23576.2 1 314.0 2.0 2.34 2.4 180.1 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000049719 Prss46 ENSMUST00000119427 - NO_TRANSLATION retained_intron ENSMUSG00000092622 Khdc3 ENSMUST00000167514 ENSMUSP00000132527 TRANSLATION protein_coding - - 5 416.0 0.0 3.25 0.0 108.5 0.0 -4,-6 0.0446 - 8.0 ALTERNATIVE:2 ENSMUSG00000092622 Khdc3 ENSMUST00000034737 ENSMUSP00000034737 TRANSLATION protein_coding - CCDS23336.1 1 440.0 0.0 3.25 0.1 108.5 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000092622 Khdc3 ENSMUST00000173734 ENSMUSP00000133915 TRANSLATION protein_coding - CCDS81036.1 1 346.0 0.0 3.25 0.0 108.5 0.0 -4,-6 0.2506 - 8.0 ALTERNATIVE:2 ENSMUSG00000092622 Khdc3 ENSMUST00000172578 ENSMUSP00000133850 TRANSLATION protein_coding stop - 3 74.0 0.0 1.5 0.0 61.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000110621 Or7g22 ENSMUST00000212482 ENSMUSP00000148520 TRANSLATION protein_coding - CCDS85646.1 - 312.0 0.0 1.0 9.1 169.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000110621 Or7g22 ENSMUST00000215699 ENSMUSP00000149907 TRANSLATION protein_coding - CCDS85646.1 5 312.0 0.0 1.0 9.1 169.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059246 Foxb1 ENSMUST00000071281 ENSMUSP00000096197 TRANSLATION protein_coding - CCDS40677.1 1 325.0 0.0 0.6 15.4 124.7 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042757 Tmem108 ENSMUST00000189066 ENSMUSP00000141160 TRANSLATION protein_coding - CCDS23455.1 1 574.0 0.0 0.4 5.1 902.4 1.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042757 Tmem108 ENSMUST00000189588 ENSMUSP00000140027 TRANSLATION protein_coding - CCDS23455.1 1 574.0 0.0 0.4 5.1 902.4 1.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042757 Tmem108 ENSMUST00000215136 ENSMUSP00000149890 TRANSLATION protein_coding - - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000042757 Tmem108 ENSMUST00000191069 - NO_TRANSLATION retained_intron ENSMUSG00000042757 Tmem108 ENSMUST00000186455 - NO_TRANSLATION retained_intron ENSMUSG00000042757 Tmem108 ENSMUST00000049452 ENSMUSP00000046021 TRANSLATION protein_coding - CCDS23455.1 1 574.0 0.0 0.4 5.1 902.4 1.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040652 Oaz2 ENSMUST00000128928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040652 Oaz2 ENSMUST00000136166 ENSMUSP00000136082 TRANSLATION protein_coding - - 5 130.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - 2.586 MINOR ENSMUSG00000040652 Oaz2 ENSMUST00000154502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040652 Oaz2 ENSMUST00000128664 ENSMUSP00000137468 TRANSLATION protein_coding start - 3 121.0 0.0 1.75 0.0 46.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040652 Oaz2 ENSMUST00000153700 ENSMUSP00000136914 TRANSLATION protein_coding - CCDS57683.1 5 189.0 0.0 2.9 17.5 73.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040652 Oaz2 ENSMUST00000137696 - NO_TRANSLATION retained_intron ENSMUSG00000049313 Sorl1 ENSMUST00000148800 - NO_TRANSLATION retained_intron ENSMUSG00000049313 Sorl1 ENSMUST00000060989 ENSMUSP00000058613 TRANSLATION protein_coding - CCDS40594.1 1 2215.0 54.0 30.5475 6.7 1075.3 0.0 3,2 1.0 41 20.0 PRINCIPAL:1 ENSMUSG00000049313 Sorl1 ENSMUST00000139133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049313 Sorl1 ENSMUST00000134560 - NO_TRANSLATION retained_intron ENSMUSG00000057895 Zfp105 ENSMUST00000148851 ENSMUSP00000123112 TRANSLATION protein_coding stop - 3 137.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057895 Zfp105 ENSMUST00000051667 ENSMUSP00000079840 TRANSLATION protein_coding - CCDS23649.1 1 524.0 44.0 1.0 8.8 279.2 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000040325 Dcaf1 ENSMUST00000161758 ENSMUSP00000125730 TRANSLATION protein_coding - - 5 1512.0 0.0 5.92 8.5 0.0 0.0 -4,-5 0.8823 25 7.707 MINOR ENSMUSG00000040325 Dcaf1 ENSMUST00000163657 ENSMUSP00000131135 TRANSLATION protein_coding start - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0289 - -2.0 MINOR ENSMUSG00000040325 Dcaf1 ENSMUST00000188343 - NO_TRANSLATION retained_intron ENSMUSG00000040325 Dcaf1 ENSMUST00000159645 ENSMUSP00000123865 TRANSLATION protein_coding - CCDS23485.1 1 1419.0 0.0 6.25 1.1 0.0 0.0 -4,-5 0.4801 26 6.033 MINOR ENSMUSG00000040325 Dcaf1 ENSMUST00000055009 ENSMUSP00000060025 TRANSLATION protein_coding - - 5 1506.0 0.0 6.25 10.5 0.0 0.0 -4,-5 1.0 26 9.0 PRINCIPAL:1 ENSMUSG00000038691 Mbd3l1 ENSMUST00000213625 ENSMUSP00000149619 TRANSLATION protein_coding - CCDS22845.1 1 186.0 0.0 0.4 1.8 166.0 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000038691 Mbd3l1 ENSMUST00000069218 ENSMUSP00000063957 TRANSLATION protein_coding - CCDS22845.1 1 186.0 0.0 0.4 1.8 166.0 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000038691 Mbd3l1 ENSMUST00000215255 ENSMUSP00000149425 TRANSLATION protein_coding - CCDS22845.1 3 186.0 0.0 0.4 1.8 166.0 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032547 Ryk ENSMUST00000035142 ENSMUSP00000035142 TRANSLATION protein_coding - CCDS57696.1 1 591.0 0.0 6.4 0.4 425.1 1.0 -1,-2 0.6864 1 8.0 ALTERNATIVE:2 ENSMUSG00000032547 Ryk ENSMUST00000177274 - NO_TRANSLATION retained_intron ENSMUSG00000032547 Ryk ENSMUST00000175788 - NO_TRANSLATION retained_intron ENSMUSG00000032547 Ryk ENSMUST00000175883 ENSMUSP00000135858 TRANSLATION protein_coding - CCDS40747.1 1 594.0 0.0 6.4 0.4 425.1 1.0 -1,-2 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000032547 Ryk ENSMUST00000176198 ENSMUSP00000135396 TRANSLATION nonsense_mediated_decay - - 1 62.0 0.0 0.0 0.0 0.0 0.0 -1,-2 0.0 - -2.0 MINOR ENSMUSG00000032547 Ryk ENSMUST00000176573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074059 Fbxw18 ENSMUST00000098359 ENSMUSP00000095962 TRANSLATION protein_coding - CCDS40775.1 1 469.0 0.0 1.36 0.1 40.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046997 Spsb4 ENSMUST00000159298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046997 Spsb4 ENSMUST00000064445 - NO_TRANSLATION retained_intron ENSMUSG00000046997 Spsb4 ENSMUST00000162307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046997 Spsb4 ENSMUST00000055433 ENSMUSP00000057849 TRANSLATION protein_coding - CCDS23419.1 1 273.0 0.0 2.0 35.7 114.0 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000034593 Myo5a ENSMUST00000136604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034593 Myo5a ENSMUST00000136871 - NO_TRANSLATION retained_intron ENSMUSG00000034593 Myo5a ENSMUST00000123128 ENSMUSP00000116028 TRANSLATION protein_coding - CCDS52860.1 5 1853.0 18.0 26.65 9.7 1213.4 0.0 -4,-5 1.0 59 20.26 MINOR ENSMUSG00000034593 Myo5a ENSMUST00000142181 - NO_TRANSLATION retained_intron ENSMUSG00000034593 Myo5a ENSMUST00000130384 ENSMUSP00000114803 TRANSLATION protein_coding start/stop - 3 217.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 8 -2.0 MINOR ENSMUSG00000034593 Myo5a ENSMUST00000155282 ENSMUSP00000117493 TRANSLATION protein_coding - - 5 1855.0 18.0 26.65 12.0 1213.4 0.0 -4,-5 0.8745 59 20.856 MINOR ENSMUSG00000034593 Myo5a ENSMUST00000153404 - NO_TRANSLATION retained_intron ENSMUSG00000034593 Myo5a ENSMUST00000136731 ENSMUSP00000120444 TRANSLATION protein_coding - - 5 1828.0 18.0 26.65 16.4 1213.4 0.0 -4,-5 0.9459 59 22.0 PRINCIPAL:1 ENSMUSG00000034593 Myo5a ENSMUST00000129281 ENSMUSP00000118881 TRANSLATION protein_coding start/stop - 5 228.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 9 -2.0 MINOR ENSMUSG00000034593 Myo5a ENSMUST00000149032 - NO_TRANSLATION retained_intron ENSMUSG00000034593 Myo5a ENSMUST00000143355 - NO_TRANSLATION retained_intron ENSMUSG00000034593 Myo5a ENSMUST00000148144 ENSMUSP00000121158 TRANSLATION protein_coding start - 5 585.0 0.0 7.15 0.0 111.7 0.0 -4,-5 0.0 22 -2.0 MINOR ENSMUSG00000034593 Myo5a ENSMUST00000149823 - NO_TRANSLATION retained_intron ENSMUSG00000034593 Myo5a ENSMUST00000123531 ENSMUSP00000122773 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 1.33 0.0 20.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032125 Robo4 ENSMUST00000102895 ENSMUSP00000099959 TRANSLATION protein_coding - - 1 1005.0 0.0 4.998 4.8 119.3 2.0 1,-2 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000032125 Robo4 ENSMUST00000115046 ENSMUSP00000110698 TRANSLATION protein_coding - - 2 1064.0 0.0 4.998 0.0 119.3 2.0 1,-2 0.2952 12 12.0 MINOR ENSMUSG00000032125 Robo4 ENSMUST00000239486 ENSMUSP00000159318 TRANSLATION protein_coding - CCDS22977.1 - 1015.0 0.0 4.998 0.1 119.3 2.0 -3,-6 0.6114 11 12.0 MINOR ENSMUSG00000032125 Robo4 ENSMUST00000215777 - NO_TRANSLATION retained_intron ENSMUSG00000032125 Robo4 ENSMUST00000115048 ENSMUSP00000110700 TRANSLATION protein_coding - - 1 901.0 0.0 4.598 0.0 80.5 2.0 0,-3 0.0134 10 8.874 MINOR ENSMUSG00000032125 Robo4 ENSMUST00000214185 ENSMUSP00000150722 TRANSLATION protein_coding - - 1 1012.0 0.0 4.998 2.3 119.3 2.0 1,-2 0.8158 12 12.684 MINOR ENSMUSG00000032125 Robo4 ENSMUST00000156972 ENSMUSP00000150053 TRANSLATION nonsense_mediated_decay - - 2 308.0 0.0 2.57 0.0 93.1 0.0 1,-2 0.0038 2 -2.0 MINOR ENSMUSG00000032278 Paqr5 ENSMUST00000034817 ENSMUSP00000034817 TRANSLATION protein_coding - CCDS23261.1 1 330.0 0.0 6.5 15.1 192.6 8.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032278 Paqr5 ENSMUST00000135050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032278 Paqr5 ENSMUST00000113990 ENSMUSP00000109623 TRANSLATION protein_coding - - 1 316.0 0.0 6.0 7.0 192.6 8.0 -4,-7 0.5444 - 12.702 MINOR ENSMUSG00000037190 Cyb561d2 ENSMUST00000194967 ENSMUSP00000142243 TRANSLATION nonsense_mediated_decay - - 2 44.0 0.0 1.33 0.0 0.0 1.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037190 Cyb561d2 ENSMUST00000041459 ENSMUSP00000044093 TRANSLATION protein_coding - CCDS23491.1 1 222.0 0.0 3.83 31.0 120.2 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037190 Cyb561d2 ENSMUST00000194906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037190 Cyb561d2 ENSMUST00000194344 ENSMUSP00000141535 TRANSLATION protein_coding start - 5 74.0 0.0 1.83 0.0 44.5 1.0 0,-3 0.0017 - -2.0 MINOR ENSMUSG00000037190 Cyb561d2 ENSMUST00000195235 ENSMUSP00000141723 TRANSLATION protein_coding - CCDS23491.1 1 222.0 0.0 3.83 31.0 120.2 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040563 Plppr2 ENSMUST00000188468 ENSMUSP00000140166 TRANSLATION protein_coding - - 5 427.0 0.0 1.625 0.0 54.5 10.0 -3,-6 0.047 5 11.574 MINOR ENSMUSG00000040563 Plppr2 ENSMUST00000190387 ENSMUSP00000139727 TRANSLATION protein_coding - CCDS80966.1 1 343.0 0.0 1.74875 4.2 54.5 12.0 -2,-4 0.649 2 13.296 MINOR ENSMUSG00000040563 Plppr2 ENSMUST00000046371 ENSMUSP00000038616 TRANSLATION protein_coding - CCDS72203.1 1 452.0 0.0 1.74875 8.4 54.5 12.0 -2,-4 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000023192 Grm2 ENSMUST00000200826 ENSMUSP00000144076 TRANSLATION protein_coding start - 1 381.0 0.0 1.92 0.0 275.9 10.0 -4,-5 0.0068 1 -2.0 MINOR ENSMUSG00000023192 Grm2 ENSMUST00000023959 ENSMUSP00000023959 TRANSLATION protein_coding - CCDS52914.1 5 872.0 20.0 4.72 0.1 595.7 10.0 4,-1 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000023192 Grm2 ENSMUST00000201955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023192 Grm2 ENSMUST00000201681 ENSMUSP00000144631 TRANSLATION protein_coding - - 1 594.0 20.0 4.08 0.0 392.7 4.0 4,-1 0.0063 10 10.722 MINOR ENSMUSG00000032126 Hmbs ENSMUST00000097558 ENSMUSP00000095166 TRANSLATION protein_coding - CCDS52779.1 1 344.0 14.0 9.66 11.8 78.9 0.0 -4,-2 0.9041 9 20.788 MINOR ENSMUSG00000032126 Hmbs ENSMUST00000216852 ENSMUSP00000150673 TRANSLATION nonsense_mediated_decay - - 2 39.0 0.0 0.5 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000032126 Hmbs ENSMUST00000215934 - NO_TRANSLATION retained_intron ENSMUSG00000032126 Hmbs ENSMUST00000214967 - NO_TRANSLATION retained_intron ENSMUSG00000032126 Hmbs ENSMUST00000215091 ENSMUSP00000149522 TRANSLATION protein_coding stop - 2 52.0 1.0 1.75 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000032126 Hmbs ENSMUST00000077353 ENSMUSP00000076575 TRANSLATION protein_coding - CCDS23106.1 1 361.0 14.0 9.726 15.8 78.9 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000032126 Hmbs ENSMUST00000215859 - NO_TRANSLATION retained_intron ENSMUSG00000032126 Hmbs ENSMUST00000216658 ENSMUSP00000150138 TRANSLATION protein_coding start - 3 126.0 5.0 3.5 0.0 77.7 0.0 -4,-2 0.0091 1 -2.0 MINOR ENSMUSG00000032126 Hmbs ENSMUST00000214012 - NO_TRANSLATION retained_intron ENSMUSG00000032485 Scap ENSMUST00000196424 - NO_TRANSLATION retained_intron ENSMUSG00000032485 Scap ENSMUST00000199886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032485 Scap ENSMUST00000198976 ENSMUSP00000143369 TRANSLATION protein_coding stop - 5 153.0 2.0 1.332 0.0 0.0 1.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000032485 Scap ENSMUST00000198761 ENSMUSP00000143710 TRANSLATION protein_coding stop - 2 40.0 2.0 1.0 0.0 0.0 1.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000032485 Scap ENSMUST00000196775 - NO_TRANSLATION retained_intron ENSMUSG00000032485 Scap ENSMUST00000199709 ENSMUSP00000142458 TRANSLATION protein_coding stop - 2 40.0 2.0 1.0 0.0 0.0 1.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000032485 Scap ENSMUST00000197630 ENSMUSP00000142919 TRANSLATION protein_coding stop - 3 123.0 2.0 1.132 0.0 0.0 1.0 -4,-7 0.0005 2 -2.0 MINOR ENSMUSG00000032485 Scap ENSMUST00000098350 ENSMUSP00000095953 TRANSLATION protein_coding - CCDS23564.1 1 1276.0 2.0 7.382 9.6 198.7 7.0 -4,-7 1.0 9 17.0 PRINCIPAL:1 ENSMUSG00000032485 Scap ENSMUST00000198871 - NO_TRANSLATION retained_intron ENSMUSG00000032485 Scap ENSMUST00000196465 - NO_TRANSLATION retained_intron ENSMUSG00000044106 Or7e174 ENSMUST00000215566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044106 Or7e174 ENSMUST00000212999 ENSMUSP00000148302 TRANSLATION protein_coding - CCDS22870.1 3 309.0 0.0 1.0 3.3 169.5 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000044106 Or7e174 ENSMUST00000212767 ENSMUSP00000148634 TRANSLATION protein_coding - CCDS22870.1 3 309.0 0.0 1.0 3.3 169.5 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032489 Kif9 ENSMUST00000198858 ENSMUSP00000142888 TRANSLATION protein_coding stop - 3 146.0 10.0 2.5 0.0 91.9 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000032489 Kif9 ENSMUST00000197248 ENSMUSP00000142734 TRANSLATION protein_coding - - 1 802.0 11.0 8.916 0.0 325.7 0.0 -4,-7 0.1289 4 18.0 MINOR ENSMUSG00000032489 Kif9 ENSMUST00000061155 ENSMUSP00000057896 TRANSLATION protein_coding - CCDS52938.1 1 810.0 11.0 8.916 0.0 325.7 0.0 -4,-7 0.2108 4 18.0 MINOR ENSMUSG00000032489 Kif9 ENSMUST00000198043 ENSMUSP00000142689 TRANSLATION protein_coding - - 1 573.0 11.0 8.916 0.0 325.7 0.0 -4,-7 0.0379 4 18.0 MINOR ENSMUSG00000032489 Kif9 ENSMUST00000084952 ENSMUSP00000082016 TRANSLATION protein_coding - CCDS23568.1 1 790.0 11.0 8.916 7.3 325.7 0.0 -4,-7 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000043154 Ppp2r3a ENSMUST00000191226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043154 Ppp2r3a ENSMUST00000066773 ENSMUSP00000069688 TRANSLATION protein_coding - CCDS52899.1 1 530.0 11.0 8.6 9.9 75.5 0.0 -4,-6 1.0 9 15.0 ALTERNATIVE:1 ENSMUSG00000043154 Ppp2r3a ENSMUST00000185887 - NO_TRANSLATION retained_intron ENSMUSG00000043154 Ppp2r3a ENSMUST00000188612 - NO_TRANSLATION retained_intron ENSMUSG00000043154 Ppp2r3a ENSMUST00000185719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043154 Ppp2r3a ENSMUST00000185735 - NO_TRANSLATION retained_intron ENSMUSG00000043154 Ppp2r3a ENSMUST00000075941 ENSMUSP00000075327 TRANSLATION protein_coding - CCDS52900.1 5 1150.0 11.0 8.6 8.7 75.5 0.0 -4,-7 0.7969 16 14.595 PRINCIPAL:3 ENSMUSG00000032113 Chek1 ENSMUST00000034625 ENSMUSP00000034625 TRANSLATION protein_coding - CCDS22972.1 1 476.0 18.0 10.5 23.0 224.1 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000032113 Chek1 ENSMUST00000174794 - NO_TRANSLATION retained_intron ENSMUSG00000032113 Chek1 ENSMUST00000172702 ENSMUSP00000134388 TRANSLATION protein_coding - CCDS22972.1 1 476.0 18.0 10.5 23.0 224.1 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000032113 Chek1 ENSMUST00000173796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032113 Chek1 ENSMUST00000174105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032113 Chek1 ENSMUST00000173963 ENSMUSP00000134029 TRANSLATION protein_coding - - 5 442.0 18.0 9.5 1.0 224.1 0.0 -4,-5 0.0788 6 16.002 MINOR ENSMUSG00000032113 Chek1 ENSMUST00000173977 - NO_TRANSLATION retained_intron ENSMUSG00000032113 Chek1 ENSMUST00000172742 ENSMUSP00000133589 TRANSLATION protein_coding stop - 3 74.0 9.0 1.75 0.0 46.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032602 Slc25a20 ENSMUST00000035222 ENSMUSP00000035222 TRANSLATION protein_coding - CCDS23535.1 1 301.0 7.0 8.5 25.5 240.0 0.0 -4,-6 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000032602 Slc25a20 ENSMUST00000195260 - NO_TRANSLATION retained_intron ENSMUSG00000032602 Slc25a20 ENSMUST00000194088 - NO_TRANSLATION retained_intron ENSMUSG00000032051 Fdx1 ENSMUST00000214486 ENSMUSP00000150644 TRANSLATION nonsense_mediated_decay start - 3 59.0 11.0 1.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032051 Fdx1 ENSMUST00000034552 ENSMUSP00000034552 TRANSLATION protein_coding - CCDS23178.1 1 188.0 12.0 3.0 4.3 29.9 0.0 -4,0 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000032051 Fdx1 ENSMUST00000214013 ENSMUSP00000150434 TRANSLATION protein_coding - - 1 166.0 12.0 2.2 0.0 24.0 0.0 -4,0 0.0042 1 15.216 MINOR ENSMUSG00000032601 Prkar2a ENSMUST00000035220 ENSMUSP00000035220 TRANSLATION protein_coding - CCDS23536.1 1 402.0 37.0 9.24 7.2 195.1 0.0 -4,-6 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000032601 Prkar2a ENSMUST00000195405 ENSMUSP00000141869 TRANSLATION protein_coding - - 5 380.0 36.0 8.41 0.0 161.0 0.0 -4,-6 0.0454 13 13.626 MINOR ENSMUSG00000032601 Prkar2a ENSMUST00000195263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032601 Prkar2a ENSMUST00000193215 - NO_TRANSLATION retained_intron ENSMUSG00000032601 Prkar2a ENSMUST00000192344 ENSMUSP00000141517 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000032601 Prkar2a ENSMUST00000192068 ENSMUSP00000142251 TRANSLATION protein_coding start/stop - 3 200.0 17.0 5.57 0.0 63.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000160724 ENSMUSP00000124055 TRANSLATION protein_coding stop - 3 235.0 0.0 4.08 0.0 237.4 0.0 -4,-7 0.0071 6 -2.0 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000162973 ENSMUSP00000124173 TRANSLATION protein_coding - CCDS52825.1 5 772.0 0.0 10.16 12.6 267.3 0.0 -4,-7 1.0 15 11.0 PRINCIPAL:4 ENSMUSG00000032280 Tle3 ENSMUST00000159140 - NO_TRANSLATION retained_intron ENSMUSG00000032280 Tle3 ENSMUST00000161207 ENSMUSP00000124557 TRANSLATION protein_coding - - 5 762.0 0.0 10.16 1.0 261.2 0.0 -4,-5 0.1734 15 7.75 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000161194 ENSMUSP00000125537 TRANSLATION protein_coding stop - 3 53.0 0.0 1.91 0.0 105.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000159050 ENSMUSP00000125032 TRANSLATION protein_coding - - 5 767.0 0.0 10.16 12.6 267.3 0.0 -4,-7 0.8776 14 11.0 ALTERNATIVE:1 ENSMUSG00000032280 Tle3 ENSMUST00000161689 ENSMUSP00000125011 TRANSLATION protein_coding - - 2 716.0 0.0 8.66 1.7 173.3 0.0 -4,-5 0.0404 14 4.43 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000162127 ENSMUSP00000124150 TRANSLATION protein_coding start - 5 702.0 0.0 8.0 1.0 145.5 0.0 -4,-5 0.0178 13 -2.0 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000160882 ENSMUSP00000124131 TRANSLATION protein_coding - CCDS52826.1 1 782.0 0.0 9.83 12.6 263.2 0.0 -4,-7 0.9879 16 9.59 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000161993 ENSMUSP00000124432 TRANSLATION protein_coding stop - 5 335.0 0.0 4.41 0.0 236.7 0.0 -4,-7 0.0079 6 -2.0 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000159386 ENSMUSP00000125049 TRANSLATION protein_coding - - 5 760.0 0.0 10.16 7.3 267.3 0.0 -4,-7 0.7319 14 9.629 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000159630 ENSMUSP00000123723 TRANSLATION protein_coding - - 1 712.0 0.0 8.66 1.7 162.7 0.0 -4,-5 0.0397 14 4.43 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000162281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032280 Tle3 ENSMUST00000034820 ENSMUSP00000034820 TRANSLATION protein_coding - CCDS52824.1 1 764.0 0.0 10.16 11.9 267.3 0.0 -4,-7 0.9859 14 10.82 ALTERNATIVE:1 ENSMUSG00000032280 Tle3 ENSMUST00000162962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032280 Tle3 ENSMUST00000160541 ENSMUSP00000124158 TRANSLATION protein_coding stop - 3 81.0 0.0 2.91 0.0 144.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032280 Tle3 ENSMUST00000162583 ENSMUSP00000124977 TRANSLATION protein_coding - - 5 769.0 0.0 10.16 12.6 267.3 0.0 -4,-7 0.8804 15 11.0 ALTERNATIVE:1 ENSMUSG00000074102 Rbm15b ENSMUST00000055843 ENSMUSP00000059330 TRANSLATION protein_coding - CCDS52915.1 - 887.0 0.0 0.75 6.5 211.4 0.0 -4,-7 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000074102 Rbm15b ENSMUST00000185707 ENSMUSP00000139726 TRANSLATION protein_coding start - 5 193.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032343 Impg1 ENSMUST00000085289 ENSMUSP00000082395 TRANSLATION protein_coding - - 5 721.0 0.0 1.6 0.0 86.2 0.0 2,-2 0.1826 1 6.0 ALTERNATIVE:2 ENSMUSG00000032343 Impg1 ENSMUST00000113250 ENSMUSP00000108876 TRANSLATION protein_coding - CCDS57685.1 1 798.0 0.0 1.6 0.0 86.2 0.0 -1,-3 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000032343 Impg1 ENSMUST00000185068 ENSMUSP00000139151 TRANSLATION protein_coding stop - 5 215.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0038 - -2.0 MINOR ENSMUSG00000094449 Or8g55 ENSMUST00000216167 ENSMUSP00000150498 TRANSLATION protein_coding - CCDS23064.1 5 314.0 0.0 1.0 2.8 181.5 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000094449 Or8g55 ENSMUST00000215303 ENSMUSP00000150389 TRANSLATION protein_coding - CCDS23064.1 2 314.0 0.0 1.0 2.8 181.5 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000094449 Or8g55 ENSMUST00000079767 ENSMUSP00000078700 TRANSLATION protein_coding - CCDS23064.1 - 314.0 0.0 1.0 2.8 181.5 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000032034 Kcnj5 ENSMUST00000216033 ENSMUSP00000149461 TRANSLATION protein_coding - - 1 106.0 0.0 1.0 0.0 65.5 0.0 -4,-6 0.0 - 3.0 MINOR ENSMUSG00000032034 Kcnj5 ENSMUST00000034533 ENSMUSP00000034533 TRANSLATION protein_coding - CCDS22952.1 1 419.0 0.0 2.0 9.9 480.8 2.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032034 Kcnj5 ENSMUST00000214223 ENSMUSP00000149000 TRANSLATION protein_coding - CCDS22952.1 5 419.0 0.0 2.0 9.9 480.8 2.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041440 Gk5 ENSMUST00000189249 - NO_TRANSLATION retained_intron ENSMUSG00000041440 Gk5 ENSMUST00000129774 ENSMUSP00000123594 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000041440 Gk5 ENSMUST00000136496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041440 Gk5 ENSMUST00000085217 ENSMUSP00000082313 TRANSLATION protein_coding - - 1 534.0 11.0 15.0 4.8 279.4 0.0 -4,-6 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000041440 Gk5 ENSMUST00000122383 ENSMUSP00000112717 TRANSLATION protein_coding - CCDS52891.1 1 516.0 11.0 14.25 0.0 279.4 0.0 -4,-6 0.0834 8 16.5 MINOR ENSMUSG00000070313 Pate14 ENSMUST00000184901 - NO_TRANSLATION retained_intron ENSMUSG00000070313 Pate14 ENSMUST00000093868 ENSMUSP00000091391 TRANSLATION protein_coding - CCDS22970.1 1 99.0 0.0 2.25 0.4 0.0 0.0 3,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000070313 Pate14 ENSMUST00000184611 ENSMUSP00000139086 TRANSLATION protein_coding - - 2 99.0 0.0 1.75 0.0 0.0 0.0 3,-2 0.5374 2 4.668 MINOR ENSMUSG00000038535 Zfp280d ENSMUST00000184019 ENSMUSP00000138994 TRANSLATION protein_coding start/stop - 5 172.0 7.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000038535 Zfp280d ENSMUST00000184968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038535 Zfp280d ENSMUST00000183459 - NO_TRANSLATION retained_intron ENSMUSG00000038535 Zfp280d ENSMUST00000184216 ENSMUSP00000139127 TRANSLATION protein_coding start - 3 136.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000038535 Zfp280d ENSMUST00000183608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038535 Zfp280d ENSMUST00000185020 ENSMUSP00000138817 TRANSLATION nonsense_mediated_decay start - 5 92.0 3.0 0.5 0.0 30.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038535 Zfp280d ENSMUST00000184639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038535 Zfp280d ENSMUST00000184053 ENSMUSP00000138848 TRANSLATION nonsense_mediated_decay - - 1 148.0 0.0 0.0 0.0 139.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038535 Zfp280d ENSMUST00000184141 - NO_TRANSLATION retained_intron ENSMUSG00000038535 Zfp280d ENSMUST00000098576 ENSMUSP00000096175 TRANSLATION protein_coding - CCDS40683.1 1 974.0 32.0 2.531 0.0 265.0 0.0 -4,-5 0.4482 10 14.0 ALTERNATIVE:2 ENSMUSG00000038535 Zfp280d ENSMUST00000184036 ENSMUSP00000138857 TRANSLATION protein_coding - - 5 949.0 32.0 2.531 0.0 265.0 0.0 -4,-5 0.2097 10 14.0 ALTERNATIVE:2 ENSMUSG00000038535 Zfp280d ENSMUST00000183400 - NO_TRANSLATION retained_intron ENSMUSG00000038535 Zfp280d ENSMUST00000183410 ENSMUSP00000139250 TRANSLATION protein_coding - CCDS81035.1 1 799.0 32.0 2.531 0.0 265.0 0.0 -4,-5 0.5086 9 14.0 ALTERNATIVE:2 ENSMUSG00000038535 Zfp280d ENSMUST00000184786 ENSMUSP00000139052 TRANSLATION nonsense_mediated_decay start - 5 180.0 0.0 0.0 0.0 200.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038535 Zfp280d ENSMUST00000184248 - NO_TRANSLATION retained_intron ENSMUSG00000038535 Zfp280d ENSMUST00000183545 - NO_TRANSLATION retained_intron ENSMUSG00000038535 Zfp280d ENSMUST00000183801 ENSMUSP00000139091 TRANSLATION nonsense_mediated_decay - - 1 529.0 25.0 2.465 0.0 265.0 0.0 -4,-5 0.0904 6 -2.0 MINOR ENSMUSG00000038535 Zfp280d ENSMUST00000184517 ENSMUSP00000138970 TRANSLATION protein_coding - - 1 787.0 32.0 2.531 0.0 265.0 0.0 -4,-5 0.8183 9 14.0 PRINCIPAL:2 ENSMUSG00000038535 Zfp280d ENSMUST00000184025 - NO_TRANSLATION retained_intron ENSMUSG00000038535 Zfp280d ENSMUST00000184399 ENSMUSP00000138902 TRANSLATION nonsense_mediated_decay - - 1 103.0 0.0 0.0 0.0 68.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038535 Zfp280d ENSMUST00000183468 ENSMUSP00000139209 TRANSLATION protein_coding - - 1 218.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0015 1 0.0 MINOR ENSMUSG00000032036 Kirrel3 ENSMUST00000184203 ENSMUSP00000139393 TRANSLATION protein_coding stop - 3 18.0 0.0 0.0 0.0 0.0 0.0 -2,-7 0.0001 - -2.0 MINOR ENSMUSG00000032036 Kirrel3 ENSMUST00000183580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032036 Kirrel3 ENSMUST00000045091 ENSMUSP00000048863 TRANSLATION protein_coding - CCDS57667.1 1 733.0 0.0 11.63 0.0 146.2 4.0 -4,-6 0.2627 8 7.202 MINOR ENSMUSG00000032036 Kirrel3 ENSMUST00000115148 ENSMUSP00000110801 TRANSLATION protein_coding - CCDS40574.1 5 766.0 0.0 11.63 11.4 146.2 4.0 0,-4 1.0 8 10.202 PRINCIPAL:2 ENSMUSG00000032036 Kirrel3 ENSMUST00000188933 ENSMUSP00000139418 TRANSLATION protein_coding - - 1 745.0 0.0 12.03 6.2 146.2 4.0 -4,-6 0.6887 8 9.5 ALTERNATIVE:1 ENSMUSG00000032036 Kirrel3 ENSMUST00000187182 ENSMUSP00000140219 TRANSLATION protein_coding - CCDS80973.1 1 777.0 0.0 11.93 0.0 146.2 4.0 3,-2 0.4264 8 7.802 MINOR ENSMUSG00000032036 Kirrel3 ENSMUST00000188658 ENSMUSP00000140086 TRANSLATION protein_coding start - 1 239.0 0.0 4.6 0.0 40.9 4.0 -4,-6 0.0022 1 -2.0 MINOR ENSMUSG00000032036 Kirrel3 ENSMUST00000190549 ENSMUSP00000139714 TRANSLATION protein_coding - - 1 579.0 0.0 11.63 0.0 146.2 4.0 -4,-6 0.0433 3 7.202 MINOR ENSMUSG00000032036 Kirrel3 ENSMUST00000187625 ENSMUSP00000139951 TRANSLATION protein_coding - CCDS57667.1 1 733.0 0.0 11.63 0.0 146.2 4.0 -4,-6 0.2627 8 7.202 MINOR ENSMUSG00000062309 Rpp25 ENSMUST00000080514 ENSMUSP00000079358 TRANSLATION protein_coding - CCDS23222.1 - 199.0 0.0 0.5 5.1 58.5 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000035934 Pknox2 ENSMUST00000188348 ENSMUSP00000139976 TRANSLATION protein_coding stop - 3 93.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035934 Pknox2 ENSMUST00000080754 ENSMUSP00000079578 TRANSLATION protein_coding - CCDS22974.1 1 474.0 0.0 3.38 24.8 202.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000035934 Pknox2 ENSMUST00000215175 - NO_TRANSLATION retained_intron ENSMUSG00000035934 Pknox2 ENSMUST00000177444 ENSMUSP00000135641 TRANSLATION protein_coding stop - 3 73.0 0.0 0.33 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000035934 Pknox2 ENSMUST00000176562 - NO_TRANSLATION retained_intron ENSMUSG00000035934 Pknox2 ENSMUST00000039674 ENSMUSP00000035806 TRANSLATION protein_coding - CCDS22974.1 1 474.0 0.0 3.38 24.8 202.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000035934 Pknox2 ENSMUST00000188057 ENSMUSP00000140793 TRANSLATION protein_coding stop - 3 88.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035934 Pknox2 ENSMUST00000177218 ENSMUSP00000135581 TRANSLATION protein_coding - CCDS22974.1 1 474.0 0.0 3.38 24.8 202.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000035934 Pknox2 ENSMUST00000189294 ENSMUSP00000139728 TRANSLATION protein_coding stop - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035934 Pknox2 ENSMUST00000177080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035934 Pknox2 ENSMUST00000188433 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035934 Pknox2 ENSMUST00000176622 - NO_TRANSLATION retained_intron ENSMUSG00000035934 Pknox2 ENSMUST00000213653 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035934 Pknox2 ENSMUST00000175938 ENSMUSP00000138866 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000091345 Col6a5 ENSMUST00000189127 - NO_TRANSLATION retained_intron ENSMUSG00000091345 Col6a5 ENSMUST00000190193 ENSMUSP00000139398 TRANSLATION protein_coding - CCDS85720.1 5 2640.0 14.0 2.212 0.1 979.6 0.0 4,-1 1.0 48 18.0 PRINCIPAL:1 ENSMUSG00000037953 A4gnt ENSMUST00000042553 ENSMUSP00000045629 TRANSLATION protein_coding - CCDS40740.1 1 341.0 2.0 0.88 5.3 232.6 0.0 0,-4 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000005131 4930550C14Rik ENSMUST00000217318 ENSMUSP00000149814 TRANSLATION protein_coding - - 1 170.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0177 - 0.0 ALTERNATIVE:2 ENSMUSG00000005131 4930550C14Rik ENSMUST00000214790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005131 4930550C14Rik ENSMUST00000215668 ENSMUSP00000150018 TRANSLATION protein_coding - - 1 170.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0177 - 0.0 ALTERNATIVE:2 ENSMUSG00000005131 4930550C14Rik ENSMUST00000005262 ENSMUSP00000005262 TRANSLATION protein_coding - CCDS23183.1 1 315.0 0.0 0.0 1.2 0.0 0.0 -4,-7 0.9345 - 1.0 PRINCIPAL:2 ENSMUSG00000032269 Htr3a ENSMUST00000217289 ENSMUSP00000150647 TRANSLATION protein_coding - - 1 483.0 0.0 6.25 4.8 322.7 3.0 3,-2 0.6053 1 9.2 ALTERNATIVE:1 ENSMUSG00000032269 Htr3a ENSMUST00000003826 ENSMUSP00000003826 TRANSLATION protein_coding - CCDS52788.1 1 489.0 0.0 5.92 4.8 330.8 3.0 3,-2 1.0 1 9.34 PRINCIPAL:2 ENSMUSG00000032194 Kank2 ENSMUST00000216008 ENSMUSP00000151181 TRANSLATION nonsense_mediated_decay - - 1 607.0 0.0 0.0 0.0 79.4 0.0 -4,-6 0.004 13 -2.0 MINOR ENSMUSG00000032194 Kank2 ENSMUST00000213691 ENSMUSP00000150735 TRANSLATION protein_coding stop - 5 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032194 Kank2 ENSMUST00000034717 ENSMUSP00000034717 TRANSLATION protein_coding - CCDS22911.1 1 843.0 0.0 5.5 0.0 150.0 0.0 -4,-6 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000032185 Carm1 ENSMUST00000130032 ENSMUSP00000117243 TRANSLATION nonsense_mediated_decay - - 1 162.0 0.0 3.0 0.0 201.8 0.0 -3,-5 0.0021 2 -2.0 MINOR ENSMUSG00000032185 Carm1 ENSMUST00000216160 ENSMUSP00000150181 TRANSLATION protein_coding start - 2 48.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032185 Carm1 ENSMUST00000154049 - NO_TRANSLATION retained_intron ENSMUSG00000032185 Carm1 ENSMUST00000130100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032185 Carm1 ENSMUST00000132011 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032185 Carm1 ENSMUST00000115395 ENSMUSP00000111053 TRANSLATION protein_coding - CCDS52736.1 1 585.0 20.0 12.15 0.1 237.0 0.0 -3,-5 0.1866 12 14.0 ALTERNATIVE:2 ENSMUSG00000032185 Carm1 ENSMUST00000139871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032185 Carm1 ENSMUST00000147749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032185 Carm1 ENSMUST00000034703 ENSMUSP00000034703 TRANSLATION protein_coding - CCDS22906.1 1 608.0 20.0 12.15 0.4 237.0 0.0 -3,-5 1.0 12 14.0 PRINCIPAL:2 ENSMUSG00000032185 Carm1 ENSMUST00000249595 ENSMUSP00000159804 TRANSLATION protein_coding - - - 629.0 20.0 12.15 0.0 237.0 0.0 -3,-6 0.1218 12 14.0 ALTERNATIVE:2 ENSMUSG00000032185 Carm1 ENSMUST00000115394 ENSMUSP00000111052 TRANSLATION protein_coding - - 5 651.0 20.0 12.15 0.0 237.0 0.0 -3,-5 0.0871 12 14.0 ALTERNATIVE:2 ENSMUSG00000032348 Gsta4 ENSMUST00000213215 ENSMUSP00000149763 TRANSLATION protein_coding stop - 3 105.0 11.0 2.75 0.0 67.1 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000032348 Gsta4 ENSMUST00000034903 ENSMUSP00000034903 TRANSLATION protein_coding - CCDS23357.1 1 222.0 12.0 5.75 24.2 136.9 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000032316 Clk3 ENSMUST00000065330 ENSMUSP00000067341 TRANSLATION protein_coding - - 1 490.0 4.0 9.66 16.7 159.1 0.0 -4,-7 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000032316 Clk3 ENSMUST00000215333 ENSMUSP00000149250 TRANSLATION protein_coding start/stop - 5 263.0 3.0 6.3764 0.0 109.0 0.0 -4,-5 0.0001 2 -2.0 MINOR ENSMUSG00000032316 Clk3 ENSMUST00000215109 - NO_TRANSLATION retained_intron ENSMUSG00000032316 Clk3 ENSMUST00000216095 - NO_TRANSLATION retained_intron ENSMUSG00000032316 Clk3 ENSMUST00000215158 ENSMUSP00000150411 TRANSLATION protein_coding stop - 3 66.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032316 Clk3 ENSMUST00000213417 - NO_TRANSLATION retained_intron ENSMUSG00000032316 Clk3 ENSMUST00000215233 ENSMUSP00000150048 TRANSLATION protein_coding - - 1 464.0 4.0 8.76 0.0 138.4 0.0 -4,-7 0.0099 4 12.958 MINOR ENSMUSG00000032316 Clk3 ENSMUST00000217409 ENSMUSP00000149179 TRANSLATION nonsense_mediated_decay - - 3 152.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032316 Clk3 ENSMUST00000216192 - NO_TRANSLATION retained_intron ENSMUSG00000032103 Pus3 ENSMUST00000121246 ENSMUSP00000113382 TRANSLATION protein_coding - - 1 316.0 1.0 0.98 0.0 86.9 0.0 -4,-5 0.0159 4 10.902 MINOR ENSMUSG00000032103 Pus3 ENSMUST00000034615 ENSMUSP00000034615 TRANSLATION protein_coding - CCDS22965.1 1 481.0 1.0 0.98 9.3 105.2 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000032103 Pus3 ENSMUST00000135768 - NO_TRANSLATION retained_intron ENSMUSG00000040661 Rad54l2 ENSMUST00000046502 ENSMUSP00000045454 TRANSLATION protein_coding - CCDS40759.1 1 1467.0 3.0 3.698 9.2 218.1 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000040661 Rad54l2 ENSMUST00000190363 ENSMUSP00000139687 TRANSLATION protein_coding start - 2 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040661 Rad54l2 ENSMUST00000189553 ENSMUSP00000139803 TRANSLATION protein_coding start - 5 190.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040661 Rad54l2 ENSMUST00000191300 - NO_TRANSLATION retained_intron ENSMUSG00000074829 2010315B03Rik ENSMUST00000071300 ENSMUSP00000071269 TRANSLATION protein_coding stop - 3 238.0 20.0 3.75 0.0 175.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074829 2010315B03Rik ENSMUST00000189915 ENSMUSP00000140738 TRANSLATION protein_coding stop - 3 151.0 12.0 2.75 0.0 131.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074829 2010315B03Rik ENSMUST00000185949 ENSMUSP00000140144 TRANSLATION protein_coding stop - 3 175.0 11.0 3.125 0.0 111.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000074829 2010315B03Rik ENSMUST00000186041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074829 2010315B03Rik ENSMUST00000177714 ENSMUSP00000137258 TRANSLATION protein_coding - CCDS81096.1 1 433.0 48.0 4.75 0.0 292.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000032839 Trpc1 ENSMUST00000190205 - NO_TRANSLATION retained_intron ENSMUSG00000032839 Trpc1 ENSMUST00000188141 - NO_TRANSLATION retained_intron ENSMUSG00000032839 Trpc1 ENSMUST00000190497 ENSMUSP00000140550 TRANSLATION nonsense_mediated_decay - - 1 84.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000032839 Trpc1 ENSMUST00000053785 ENSMUSP00000057640 TRANSLATION protein_coding - CCDS81052.1 1 775.0 0.0 9.6 1.0 146.7 11.0 -4,-7 0.2306 2 10.59 MINOR ENSMUSG00000032839 Trpc1 ENSMUST00000190604 ENSMUSP00000139577 TRANSLATION nonsense_mediated_decay - - 1 99.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000032839 Trpc1 ENSMUST00000186235 ENSMUSP00000140994 TRANSLATION protein_coding start/stop - 3 255.0 0.0 3.78 0.0 60.1 5.0 -4,-5 0.0059 2 -2.0 MINOR ENSMUSG00000032839 Trpc1 ENSMUST00000189137 ENSMUSP00000139672 TRANSLATION protein_coding - CCDS23411.1 1 809.0 0.0 10.305 1.1 146.7 11.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000036814 Slc6a20a ENSMUST00000171647 ENSMUSP00000129107 TRANSLATION protein_coding - - 5 555.0 11.0 10.698 2.5 277.1 14.0 -4,-6 0.0571 1 10.466 MINOR ENSMUSG00000036814 Slc6a20a ENSMUST00000170591 ENSMUSP00000132700 TRANSLATION protein_coding start/stop - 5 240.0 11.0 5.0 0.0 250.5 6.0 0,-3 0.0048 1 -2.0 MINOR ENSMUSG00000036814 Slc6a20a ENSMUST00000040960 ENSMUSP00000047690 TRANSLATION protein_coding - CCDS40817.1 1 592.0 11.0 11.698 13.9 583.8 16.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000032525 Nktr ENSMUST00000182503 ENSMUSP00000138463 TRANSLATION nonsense_mediated_decay start - 3 100.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000032525 Nktr ENSMUST00000213351 - NO_TRANSLATION retained_intron ENSMUSG00000032525 Nktr ENSMUST00000182179 ENSMUSP00000138437 TRANSLATION nonsense_mediated_decay - - 1 105.0 4.0 3.165 0.9 68.1 0.0 -4,-5 0.0052 - -2.0 MINOR ENSMUSG00000032525 Nktr ENSMUST00000183070 ENSMUSP00000138611 TRANSLATION nonsense_mediated_decay - - 1 105.0 4.0 3.165 0.9 68.1 0.0 -4,-5 0.0052 3 -2.0 MINOR ENSMUSG00000032525 Nktr ENSMUST00000183207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032525 Nktr ENSMUST00000182337 ENSMUSP00000138164 TRANSLATION protein_coding stop - 3 101.0 4.0 2.75 0.0 72.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000032525 Nktr ENSMUST00000182395 - NO_TRANSLATION retained_intron ENSMUSG00000032525 Nktr ENSMUST00000216573 - NO_TRANSLATION retained_intron ENSMUSG00000032525 Nktr ENSMUST00000182225 ENSMUSP00000138168 TRANSLATION protein_coding stop - 1 966.0 9.0 5.33 0.0 158.2 0.0 -4,-5 0.1359 6 -2.0 MINOR ENSMUSG00000032525 Nktr ENSMUST00000182076 - NO_TRANSLATION retained_intron ENSMUSG00000032525 Nktr ENSMUST00000182086 - NO_TRANSLATION retained_intron ENSMUSG00000032525 Nktr ENSMUST00000182311 ENSMUSP00000138690 TRANSLATION protein_coding stop - 5 99.0 3.0 3.33 0.0 70.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032525 Nktr ENSMUST00000183311 - NO_TRANSLATION retained_intron ENSMUSG00000032525 Nktr ENSMUST00000182763 ENSMUSP00000138272 TRANSLATION nonsense_mediated_decay - - 5 69.0 0.0 2.165 0.0 28.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032525 Nktr ENSMUST00000035112 ENSMUSP00000035112 TRANSLATION protein_coding - CCDS23636.1 1 1453.0 9.0 5.33 0.0 158.2 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000032525 Nktr ENSMUST00000182904 - NO_TRANSLATION retained_intron ENSMUSG00000032525 Nktr ENSMUST00000182713 ENSMUSP00000138587 TRANSLATION protein_coding start - 3 95.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000032525 Nktr ENSMUST00000182607 - NO_TRANSLATION retained_intron ENSMUSG00000032399 Rpl4 ENSMUST00000217055 - NO_TRANSLATION retained_intron ENSMUSG00000032399 Rpl4 ENSMUST00000213760 - NO_TRANSLATION retained_intron ENSMUSG00000032399 Rpl4 ENSMUST00000034966 ENSMUSP00000034966 TRANSLATION protein_coding - CCDS40667.1 1 419.0 0.0 8.15 0.4 247.5 0.0 -4,-5 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000032050 Rdx ENSMUST00000238858 ENSMUSP00000158900 TRANSLATION protein_coding - - - 604.0 0.0 8.763 8.0 507.2 0.0 -4,-5 0.3573 19 12.804 MINOR ENSMUSG00000032050 Rdx ENSMUST00000000590 ENSMUSP00000000590 TRANSLATION protein_coding - CCDS40634.1 1 583.0 0.0 8.763 35.8 507.2 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000032050 Rdx ENSMUST00000163153 ENSMUSP00000128249 TRANSLATION protein_coding - CCDS40634.1 1 583.0 0.0 8.763 35.8 507.2 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000032050 Rdx ENSMUST00000061352 ENSMUSP00000055303 TRANSLATION protein_coding - CCDS52793.1 1 389.0 0.0 6.9 0.0 252.9 0.0 -4,-5 0.008 7 2.274 MINOR ENSMUSG00000032558 Nphp3 ENSMUST00000193642 - NO_TRANSLATION retained_intron ENSMUSG00000032558 Nphp3 ENSMUST00000216593 ENSMUSP00000150368 TRANSLATION protein_coding start - 5 43.0 0.0 0.8 0.0 38.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032558 Nphp3 ENSMUST00000194183 ENSMUSP00000142049 TRANSLATION protein_coding start - 3 136.0 0.0 1.7 0.0 66.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032558 Nphp3 ENSMUST00000193439 ENSMUSP00000141540 TRANSLATION nonsense_mediated_decay - - 5 538.0 11.0 0.0 0.0 0.0 0.0 -4,-5 0.0037 2 -2.0 MINOR ENSMUSG00000032558 Nphp3 ENSMUST00000192485 - NO_TRANSLATION retained_intron ENSMUSG00000032558 Nphp3 ENSMUST00000194774 ENSMUSP00000141596 TRANSLATION protein_coding - - 1 1205.0 16.0 5.385 0.0 197.9 0.0 -4,-6 0.2156 12 18.0 MINOR ENSMUSG00000032558 Nphp3 ENSMUST00000035167 ENSMUSP00000035167 TRANSLATION protein_coding - CCDS40749.1 1 1325.0 16.0 5.385 5.8 197.9 0.0 -4,-5 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000032558 Nphp3 ENSMUST00000191919 - NO_TRANSLATION retained_intron ENSMUSG00000032306 Mpi ENSMUST00000145543 - NO_TRANSLATION retained_intron ENSMUSG00000032306 Mpi ENSMUST00000140671 - NO_TRANSLATION retained_intron ENSMUSG00000032306 Mpi ENSMUST00000124593 - NO_TRANSLATION retained_intron ENSMUSG00000032306 Mpi ENSMUST00000156428 ENSMUSP00000119342 TRANSLATION nonsense_mediated_decay start - 5 122.0 2.0 2.0 0.0 144.9 0.0 -3,-6 0.0 3 -2.0 MINOR ENSMUSG00000032306 Mpi ENSMUST00000034856 ENSMUSP00000034856 TRANSLATION protein_coding - CCDS40650.1 1 423.0 6.0 7.0 19.0 474.2 0.0 -2,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000032388 Spg21 ENSMUST00000034955 ENSMUSP00000034955 TRANSLATION protein_coding - CCDS23293.1 1 308.0 0.0 8.0 18.7 33.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000032388 Spg21 ENSMUST00000216992 - NO_TRANSLATION retained_intron ENSMUSG00000032388 Spg21 ENSMUST00000213957 ENSMUSP00000150034 TRANSLATION protein_coding - - 1 306.0 0.0 7.0 0.0 33.0 0.0 -4,-5 0.1025 4 10.002 MINOR ENSMUSG00000032388 Spg21 ENSMUST00000215170 ENSMUSP00000150052 TRANSLATION protein_coding stop - 2 135.0 0.0 3.5 0.0 26.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000051414 Or7g17 ENSMUST00000212229 ENSMUSP00000148395 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 8.4 176.9 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051414 Or7g17 ENSMUST00000058411 ENSMUSP00000058101 TRANSLATION protein_coding - CCDS22847.1 - 321.0 0.0 1.0 1.2 176.9 6.0 -4,-5 0.5619 - 12.081 MINOR ENSMUSG00000049734 Trex1 ENSMUST00000112053 ENSMUSP00000107684 TRANSLATION protein_coding - CCDS23544.1 1 314.0 9.0 1.0 7.8 0.0 1.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000049734 Trex1 ENSMUST00000061973 ENSMUSP00000050971 TRANSLATION protein_coding - CCDS23544.1 1 314.0 9.0 1.0 7.8 0.0 1.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000042262 Ccr8 ENSMUST00000048777 ENSMUSP00000038473 TRANSLATION protein_coding - CCDS23621.1 1 353.0 0.0 1.0 9.2 146.6 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000055069 Rab39 ENSMUST00000068449 ENSMUSP00000063804 TRANSLATION protein_coding - CCDS23185.1 1 217.0 21.0 2.0 34.9 187.5 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000046111 Cep295 ENSMUST00000159156 ENSMUSP00000123950 TRANSLATION protein_coding start/stop - 5 111.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0261 - -2.0 MINOR ENSMUSG00000046111 Cep295 ENSMUST00000217140 ENSMUSP00000150266 TRANSLATION protein_coding start - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0385 - -2.0 MINOR ENSMUSG00000046111 Cep295 ENSMUST00000162264 ENSMUSP00000123748 TRANSLATION protein_coding start/stop - 3 257.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0391 - -2.0 MINOR ENSMUSG00000046111 Cep295 ENSMUST00000160238 - NO_TRANSLATION retained_intron ENSMUSG00000046111 Cep295 ENSMUST00000160692 - NO_TRANSLATION retained_intron ENSMUSG00000046111 Cep295 ENSMUST00000058041 - NO_TRANSLATION retained_intron ENSMUSG00000046111 Cep295 ENSMUST00000161132 ENSMUSP00000123788 TRANSLATION protein_coding - - 5 2412.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.7495 2 0.0 PRINCIPAL:2 ENSMUSG00000046111 Cep295 ENSMUST00000059410 - NO_TRANSLATION retained_intron ENSMUSG00000046111 Cep295 ENSMUST00000162689 - NO_TRANSLATION retained_intron ENSMUSG00000046111 Cep295 ENSMUST00000098979 ENSMUSP00000096578 TRANSLATION protein_coding - - 5 2332.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.3447 2 0.0 ALTERNATIVE:2 ENSMUSG00000046111 Cep295 ENSMUST00000163010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046111 Cep295 ENSMUST00000217407 - NO_TRANSLATION retained_intron ENSMUSG00000046111 Cep295 ENSMUST00000161533 - NO_TRANSLATION retained_intron ENSMUSG00000046111 Cep295 ENSMUST00000160946 ENSMUSP00000125494 TRANSLATION protein_coding start - 5 1202.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.2115 1 -2.0 MINOR ENSMUSG00000032243 Itga11 ENSMUST00000034774 ENSMUSP00000034774 TRANSLATION protein_coding - CCDS23265.1 1 1188.0 14.0 11.913 11.6 295.3 0.0 1,-3 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000032243 Itga11 ENSMUST00000159012 - NO_TRANSLATION retained_intron ENSMUSG00000032479 Map4 ENSMUST00000164930 ENSMUSP00000131285 TRANSLATION protein_coding - CCDS81082.1 1 933.0 0.0 4.03 0.0 207.3 0.0 -4,-5 0.1966 35 6.002 MINOR ENSMUSG00000032479 Map4 ENSMUST00000199461 ENSMUSP00000143296 TRANSLATION protein_coding start - 5 276.0 0.0 3.03 0.0 149.2 0.0 -4,-2 0.0011 5 -2.0 MINOR ENSMUSG00000032479 Map4 ENSMUST00000199548 ENSMUSP00000143408 TRANSLATION protein_coding start - 2 290.0 0.0 4.53 0.0 207.3 0.0 -4,-2 0.0244 7 -2.0 MINOR ENSMUSG00000032479 Map4 ENSMUST00000200480 ENSMUSP00000142501 TRANSLATION protein_coding start - 3 116.0 0.0 1.83 0.0 78.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032479 Map4 ENSMUST00000169851 ENSMUSP00000131660 TRANSLATION protein_coding - CCDS57703.1 1 99.0 0.0 0.8 2.1 0.0 0.0 -4,-5 0.2843 2 1.0 MINOR ENSMUSG00000032479 Map4 ENSMUST00000196729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032479 Map4 ENSMUST00000035055 ENSMUSP00000035055 TRANSLATION protein_coding - CCDS57704.1 1 1125.0 0.0 5.03 0.0 207.3 0.0 -4,-5 1.0 31 8.0 PRINCIPAL:2 ENSMUSG00000032479 Map4 ENSMUST00000199498 ENSMUSP00000142439 TRANSLATION protein_coding - CCDS81083.1 1 902.0 0.0 3.03 0.0 149.2 0.0 -4,-5 0.0646 34 3.398 MINOR ENSMUSG00000032479 Map4 ENSMUST00000199161 ENSMUSP00000143205 TRANSLATION protein_coding start - 3 207.0 0.0 4.03 0.0 207.3 0.0 -4,-1 0.0229 3 -2.0 MINOR ENSMUSG00000032479 Map4 ENSMUST00000197289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032479 Map4 ENSMUST00000165876 ENSMUSP00000132662 TRANSLATION protein_coding - - 5 1124.0 0.0 5.03 0.0 207.3 0.0 -4,-5 0.6551 31 8.0 ALTERNATIVE:2 ENSMUSG00000032479 Map4 ENSMUST00000163190 ENSMUSP00000143171 TRANSLATION protein_coding start/stop - 5 1441.0 0.0 1.4 0.0 58.1 0.0 -4,-5 0.0268 49 -2.0 MINOR ENSMUSG00000032479 Map4 ENSMUST00000199985 ENSMUSP00000142640 TRANSLATION protein_coding start - 3 81.0 0.0 1.5 0.0 43.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032479 Map4 ENSMUST00000163979 ENSMUSP00000129362 TRANSLATION protein_coding - - 1 414.0 0.0 4.23 0.0 207.3 0.0 -4,-2 0.0294 10 6.398 MINOR ENSMUSG00000032479 Map4 ENSMUST00000198185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032479 Map4 ENSMUST00000198511 ENSMUSP00000142558 TRANSLATION protein_coding start - 2 220.0 0.0 4.03 0.0 207.3 0.0 -4,-2 0.0199 3 -2.0 MINOR ENSMUSG00000032479 Map4 ENSMUST00000196763 - NO_TRANSLATION retained_intron ENSMUSG00000070280 Slc22a14 ENSMUST00000127794 ENSMUSP00000120144 TRANSLATION protein_coding stop - 5 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000070280 Slc22a14 ENSMUST00000093775 ENSMUSP00000091289 TRANSLATION protein_coding - CCDS23609.1 1 629.0 0.0 4.632 0.1 94.0 11.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000070280 Slc22a14 ENSMUST00000152061 ENSMUSP00000117967 TRANSLATION protein_coding start/stop - 3 196.0 0.0 0.5 0.0 0.0 2.0 -4,-5 0.0027 - -2.0 MINOR ENSMUSG00000001948 Spa17 ENSMUST00000002013 ENSMUSP00000002013 TRANSLATION protein_coding - CCDS22982.1 1 149.0 0.0 0.8 3.1 78.7 0.0 -4,-6 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000001948 Spa17 ENSMUST00000214786 ENSMUSP00000150651 TRANSLATION protein_coding stop - 3 130.0 0.0 0.8 0.0 77.3 0.0 -4,-6 0.0376 2 -2.0 MINOR ENSMUSG00000001948 Spa17 ENSMUST00000215336 - NO_TRANSLATION retained_intron ENSMUSG00000059106 Or10d4c ENSMUST00000219295 ENSMUSP00000151840 TRANSLATION protein_coding - CCDS23055.1 5 314.0 0.0 1.0 5.5 171.1 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059106 Or10d4c ENSMUST00000076548 ENSMUSP00000075863 TRANSLATION protein_coding - CCDS23055.1 - 314.0 0.0 1.0 5.5 171.1 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000110519 Or7g23 ENSMUST00000212127 ENSMUSP00000148782 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 8.4 176.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034533 Scn10a ENSMUST00000216583 - NO_TRANSLATION retained_intron ENSMUSG00000034533 Scn10a ENSMUST00000084787 ENSMUSP00000081845 TRANSLATION protein_coding - CCDS57716.1 5 1958.0 0.0 10.04 2.9 1032.0 7.0 -4,-6 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000034533 Scn10a ENSMUST00000213392 ENSMUSP00000148987 TRANSLATION protein_coding - - 1 1957.0 0.0 10.04 2.2 1032.8 7.0 -4,-6 0.8734 - 8.632 ALTERNATIVE:2 ENSMUSG00000034533 Scn10a ENSMUST00000213401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034533 Scn10a ENSMUST00000214408 ENSMUSP00000150830 TRANSLATION protein_coding - CCDS57716.1 1 1958.0 0.0 10.04 2.9 1032.0 7.0 -4,-6 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000032462 Pik3cb ENSMUST00000124723 ENSMUSP00000121466 TRANSLATION protein_coding stop - 5 68.0 0.0 1.5 0.0 36.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032462 Pik3cb ENSMUST00000035037 ENSMUSP00000035037 TRANSLATION protein_coding - CCDS23432.1 1 1064.0 20.0 18.8225 10.9 712.8 0.0 -4,-7 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000032462 Pik3cb ENSMUST00000136965 ENSMUSP00000138346 TRANSLATION nonsense_mediated_decay - - 1 530.0 0.0 7.438 0.0 288.1 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000032246 Calml4 ENSMUST00000214633 ENSMUSP00000150476 TRANSLATION protein_coding - - 3 76.0 8.0 1.83 0.0 0.0 0.0 -4,-5 0.0 2 5.67 MINOR ENSMUSG00000032246 Calml4 ENSMUST00000215119 - NO_TRANSLATION retained_intron ENSMUSG00000032246 Calml4 ENSMUST00000034777 ENSMUSP00000034777 TRANSLATION protein_coding - CCDS40664.1 1 153.0 10.0 4.33 28.5 53.4 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000032246 Calml4 ENSMUST00000213643 ENSMUSP00000150355 TRANSLATION protein_coding - - 2 81.0 4.0 2.0 1.0 17.9 0.0 -4,-5 0.0044 4 5.346 MINOR ENSMUSG00000032246 Calml4 ENSMUST00000215870 ENSMUSP00000148892 TRANSLATION protein_coding - - 1 139.0 10.0 3.53 0.0 35.5 0.0 -4,-5 0.0302 5 14.388 MINOR ENSMUSG00000032246 Calml4 ENSMUST00000163820 ENSMUSP00000132298 TRANSLATION protein_coding - CCDS52827.1 2 106.0 8.0 2.83 1.7 17.9 0.0 -4,-5 0.0187 4 9.778 MINOR ENSMUSG00000032246 Calml4 ENSMUST00000215968 ENSMUSP00000149319 TRANSLATION protein_coding - - 2 117.0 10.0 3.25 7.8 17.9 0.0 -4,-7 0.0967 5 12.838 MINOR ENSMUSG00000053128 Rnf26 ENSMUST00000215685 ENSMUSP00000150766 TRANSLATION protein_coding - - 5 181.0 0.0 0.0 0.0 0.0 2.0 -1,-5 0.0021 - 0.0 MINOR ENSMUSG00000053128 Rnf26 ENSMUST00000160985 ENSMUSP00000124568 TRANSLATION nonsense_mediated_decay start - 2 64.0 8.0 0.3 0.0 54.1 0.0 -4,-5 0.041 - -2.0 MINOR ENSMUSG00000053128 Rnf26 ENSMUST00000065379 ENSMUSP00000070060 TRANSLATION nonsense_mediated_decay - CCDS23096.1 2 424.0 8.0 0.3 7.8 54.1 5.0 -1,-5 1.0 - -2.0 MINOR ENSMUSG00000053128 Rnf26 ENSMUST00000162196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053128 Rnf26 ENSMUST00000216511 ENSMUSP00000148925 TRANSLATION protein_coding - - 5 303.0 8.0 0.3 0.0 54.1 3.0 -4,-5 0.0694 - 18.0 MINOR ENSMUSG00000053128 Rnf26 ENSMUST00000056328 ENSMUSP00000110478 TRANSLATION protein_coding - CCDS23096.1 - 424.0 8.0 0.3 7.8 54.1 5.0 -1,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000047036 Zfp445 ENSMUST00000216721 ENSMUSP00000150435 TRANSLATION protein_coding stop - 2 119.0 0.0 1.13 0.0 101.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000047036 Zfp445 ENSMUST00000213971 ENSMUSP00000149985 TRANSLATION protein_coding start/stop - 2 252.0 0.0 1.5 0.0 76.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047036 Zfp445 ENSMUST00000056467 ENSMUSP00000055738 TRANSLATION protein_coding - CCDS23648.1 1 986.0 32.0 3.88 0.0 348.3 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000047036 Zfp445 ENSMUST00000216243 - NO_TRANSLATION retained_intron ENSMUSG00000047036 Zfp445 ENSMUST00000214558 ENSMUSP00000150362 TRANSLATION protein_coding stop - 5 111.0 0.0 0.8 0.0 89.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000047036 Zfp445 ENSMUST00000216063 ENSMUSP00000151198 TRANSLATION protein_coding - CCDS23648.1 1 986.0 32.0 3.88 0.0 348.3 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000047036 Zfp445 ENSMUST00000214162 - NO_TRANSLATION retained_intron ENSMUSG00000047036 Zfp445 ENSMUST00000214626 ENSMUSP00000148942 TRANSLATION protein_coding - - 5 303.0 0.0 3.38 0.1 197.9 0.0 -4,-7 0.0023 - 4.998 MINOR ENSMUSG00000032218 Ccnb2 ENSMUST00000034742 ENSMUSP00000034742 TRANSLATION protein_coding - CCDS23320.1 1 398.0 0.0 6.0 11.7 262.3 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000032553 Srprb ENSMUST00000163567 - NO_TRANSLATION retained_intron ENSMUSG00000032553 Srprb ENSMUST00000190760 ENSMUSP00000151899 TRANSLATION protein_coding start - 1 54.0 4.0 1.5 0.0 78.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032553 Srprb ENSMUST00000035157 ENSMUSP00000035157 TRANSLATION protein_coding - CCDS23450.1 1 269.0 18.0 4.5 7.5 244.6 0.0 -4,-7 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000066896 Or7e178 ENSMUST00000212943 ENSMUSP00000153832 TRANSLATION protein_coding - - 1 323.0 0.0 1.0 3.8 181.4 5.0 -4,-5 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000066896 Or7e178 ENSMUST00000086473 ENSMUSP00000083664 TRANSLATION protein_coding - CCDS40542.1 1 331.0 0.0 1.0 0.1 181.4 5.0 -4,-7 0.5286 - 8.0 ALTERNATIVE:2 ENSMUSG00000066896 Or7e178 ENSMUST00000211895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054141 Or1m1 ENSMUST00000066997 ENSMUSP00000064189 TRANSLATION protein_coding - CCDS22846.1 - 313.0 0.0 1.0 11.4 211.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054141 Or1m1 ENSMUST00000216754 ENSMUSP00000149702 TRANSLATION protein_coding - CCDS22846.1 2 313.0 0.0 1.0 11.4 211.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054141 Or1m1 ENSMUST00000214366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063350 Or8b12 ENSMUST00000216982 ENSMUSP00000150088 TRANSLATION protein_coding - CCDS22986.1 5 310.0 0.0 1.0 12.5 165.4 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063350 Or8b12 ENSMUST00000115004 ENSMUSP00000110656 TRANSLATION protein_coding - CCDS22986.1 - 310.0 0.0 1.0 12.5 165.4 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101152 Gm28305 ENSMUST00000147249 ENSMUSP00000115381 TRANSLATION protein_coding,RT start/stop - 2 122.0 0.0 2.2 0.0 49.1 0.0 -4,-7 0.7383 - -2.0 PRINCIPAL:1 ENSMUSG00000004771 Rab11a ENSMUST00000168366 ENSMUSP00000128150 TRANSLATION protein_coding start - 3 87.0 7.0 1.5 0.0 56.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000004771 Rab11a ENSMUST00000166857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004771 Rab11a ENSMUST00000172444 - NO_TRANSLATION retained_intron ENSMUSG00000004771 Rab11a ENSMUST00000169058 ENSMUSP00000129729 TRANSLATION protein_coding - - 5 153.0 21.0 3.25 1.0 181.7 0.0 -4,-5 0.0038 - 11.196 MINOR ENSMUSG00000004771 Rab11a ENSMUST00000165083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004771 Rab11a ENSMUST00000172298 ENSMUSP00000129163 TRANSLATION protein_coding - CCDS23282.1 1 216.0 24.0 4.73 36.9 212.5 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000004771 Rab11a ENSMUST00000171100 ENSMUSP00000127968 TRANSLATION protein_coding stop - 2 80.0 7.0 2.23 0.0 54.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000004771 Rab11a ENSMUST00000167569 ENSMUSP00000125755 TRANSLATION protein_coding - - 3 86.0 3.0 1.98 0.0 21.7 0.0 -4,-5 0.0 2 0.498 MINOR ENSMUSG00000004771 Rab11a ENSMUST00000004892 ENSMUSP00000004892 TRANSLATION protein_coding stop - 5 155.0 21.0 3.58 0.0 178.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042487 Leo1 ENSMUST00000213248 - NO_TRANSLATION retained_intron ENSMUSG00000042487 Leo1 ENSMUST00000213767 - NO_TRANSLATION retained_intron ENSMUSG00000042487 Leo1 ENSMUST00000048937 ENSMUSP00000046905 TRANSLATION protein_coding - CCDS23343.1 1 667.0 0.0 3.75 0.3 187.1 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000032014 Oaf ENSMUST00000034512 ENSMUSP00000034512 TRANSLATION protein_coding - CCDS23091.1 1 282.0 0.0 4.55 3.5 351.9 0.0 0,-3 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000032014 Oaf ENSMUST00000213286 ENSMUSP00000150783 TRANSLATION protein_coding start - 3 121.0 0.0 1.42 0.0 141.5 0.0 -4,-5 0.0001 3 -2.0 MINOR ENSMUSG00000032014 Oaf ENSMUST00000215387 - NO_TRANSLATION retained_intron ENSMUSG00000033453 Adamts15 ENSMUST00000065112 ENSMUSP00000067022 TRANSLATION protein_coding - CCDS22945.1 1 950.0 18.0 7.45 4.2 336.3 0.0 2,-2 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000033453 Adamts15 ENSMUST00000217070 - NO_TRANSLATION retained_intron ENSMUSG00000033453 Adamts15 ENSMUST00000216215 ENSMUSP00000150677 TRANSLATION protein_coding stop - 2 56.0 5.0 1.75 0.0 24.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034858 Atosa ENSMUST00000216809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034858 Atosa ENSMUST00000170846 ENSMUSP00000129319 TRANSLATION protein_coding - CCDS52857.1 5 1075.0 0.0 0.0 0.1 118.9 0.0 -4,-5 0.6219 2 2.0 ALTERNATIVE:2 ENSMUSG00000034858 Atosa ENSMUST00000216125 - NO_TRANSLATION retained_intron ENSMUSG00000034858 Atosa ENSMUST00000214755 ENSMUSP00000150065 TRANSLATION nonsense_mediated_decay - - 2 963.0 0.0 0.0 0.0 50.9 0.0 -4,-5 0.0187 1 -2.0 MINOR ENSMUSG00000034858 Atosa ENSMUST00000081746 ENSMUSP00000080442 TRANSLATION protein_coding - CCDS52858.1 1 1082.0 0.0 0.0 0.1 118.9 0.0 -4,-5 1.0 2 2.0 PRINCIPAL:2 ENSMUSG00000034858 Atosa ENSMUST00000215355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034858 Atosa ENSMUST00000215370 ENSMUSP00000149021 TRANSLATION protein_coding - CCDS52857.1 5 1075.0 0.0 0.0 0.1 118.9 0.0 -4,-5 0.6219 2 2.0 ALTERNATIVE:2 ENSMUSG00000058192 Zfp846 ENSMUST00000115557 ENSMUSP00000111219 TRANSLATION protein_coding - CCDS22878.2 1 541.0 55.0 2.0 1.0 364.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000058192 Zfp846 ENSMUST00000140668 ENSMUSP00000115945 TRANSLATION nonsense_mediated_decay - - 1 67.0 0.0 1.0 0.0 86.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058192 Zfp846 ENSMUST00000060063 ENSMUSP00000051593 TRANSLATION protein_coding - CCDS22878.2 5 541.0 55.0 2.0 1.0 364.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000058192 Zfp846 ENSMUST00000214194 - NO_TRANSLATION retained_intron ENSMUSG00000058192 Zfp846 ENSMUST00000217655 - NO_TRANSLATION retained_intron ENSMUSG00000094535 Or7g31 ENSMUST00000077347 ENSMUSP00000076569 TRANSLATION protein_coding - CCDS22858.1 - 315.0 0.0 1.0 8.4 173.7 5.0 -4,-6 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000094535 Or7g31 ENSMUST00000211832 ENSMUSP00000148623 TRANSLATION protein_coding - - - 312.0 0.0 1.0 8.4 173.7 5.0 -4,-6 0.8925 - 11.0 ALTERNATIVE:1 ENSMUSG00000032056 Btg4 ENSMUST00000213117 ENSMUSP00000151173 TRANSLATION protein_coding - - 1 191.0 0.0 3.75 0.0 143.2 0.0 -4,-6 0.7438 - 8.0 PRINCIPAL:2 ENSMUSG00000032056 Btg4 ENSMUST00000216453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032056 Btg4 ENSMUST00000114431 ENSMUSP00000110074 TRANSLATION protein_coding - CCDS40629.1 1 250.0 0.0 3.75 0.4 143.2 0.0 -4,-6 0.3138 - 8.0 ALTERNATIVE:2 ENSMUSG00000032056 Btg4 ENSMUST00000214452 ENSMUSP00000150174 TRANSLATION protein_coding stop - 3 31.0 0.0 1.0 0.0 28.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032056 Btg4 ENSMUST00000213680 ENSMUSP00000149181 TRANSLATION protein_coding - CCDS40629.1 1 250.0 0.0 3.75 0.4 143.2 0.0 -4,-6 0.3138 - 8.0 ALTERNATIVE:2 ENSMUSG00000032492 Pth1r ENSMUST00000198865 ENSMUSP00000143298 TRANSLATION protein_coding - CCDS52940.1 1 591.0 0.0 9.33 6.9 373.5 6.0 1,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000032492 Pth1r ENSMUST00000199791 ENSMUSP00000142957 TRANSLATION protein_coding stop - 5 54.0 3.0 0.0 0.0 0.0 0.0 0,-3 0.0013 - -2.0 MINOR ENSMUSG00000032492 Pth1r ENSMUST00000166716 ENSMUSP00000132064 TRANSLATION protein_coding - CCDS52940.1 1 591.0 0.0 9.33 6.9 373.5 6.0 1,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000032492 Pth1r ENSMUST00000199862 ENSMUSP00000142672 TRANSLATION protein_coding stop - 5 198.0 0.0 4.08 0.0 70.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032492 Pth1r ENSMUST00000196057 ENSMUSP00000143470 TRANSLATION protein_coding stop - 5 197.0 0.0 3.75 0.0 70.6 0.0 1,-2 0.0018 1 -2.0 MINOR ENSMUSG00000032492 Pth1r ENSMUST00000006005 ENSMUSP00000006005 TRANSLATION protein_coding - CCDS52940.1 1 591.0 0.0 9.33 6.9 373.5 6.0 1,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000039488 Cntn5 ENSMUST00000160216 ENSMUSP00000124327 TRANSLATION protein_coding - CCDS52722.1 5 1098.0 0.0 19.55 7.4 393.9 0.0 0,-3 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000039488 Cntn5 ENSMUST00000074133 ENSMUSP00000073769 TRANSLATION protein_coding - CCDS52722.1 5 1098.0 0.0 19.55 7.4 393.9 0.0 0,-3 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000039488 Cntn5 ENSMUST00000160358 - NO_TRANSLATION retained_intron ENSMUSG00000039488 Cntn5 ENSMUST00000162484 ENSMUSP00000124214 TRANSLATION protein_coding - CCDS52721.1 1 893.0 0.0 16.55 0.0 319.2 0.0 2,-3 0.071 10 1.518 MINOR ENSMUSG00000039488 Cntn5 ENSMUST00000179049 ENSMUSP00000135903 TRANSLATION protein_coding - CCDS52721.1 5 893.0 0.0 16.55 0.0 319.2 0.0 2,-3 0.071 10 1.518 MINOR ENSMUSG00000042293 Gm5617 ENSMUST00000048824 ENSMUSP00000040380 TRANSLATION protein_coding - CCDS52787.1 - 117.0 0.0 0.0 3.1 139.7 0.0 -4,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000032288 Imp3 ENSMUST00000034827 ENSMUSP00000034827 TRANSLATION protein_coding - CCDS23213.1 - 184.0 0.0 1.0 34.9 65.2 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000032911 Cspg4 ENSMUST00000214057 - NO_TRANSLATION retained_intron ENSMUSG00000032911 Cspg4 ENSMUST00000215666 - NO_TRANSLATION retained_intron ENSMUSG00000032911 Cspg4 ENSMUST00000217052 - NO_TRANSLATION retained_intron ENSMUSG00000032911 Cspg4 ENSMUST00000035661 ENSMUSP00000038909 TRANSLATION protein_coding - CCDS23211.1 1 2327.0 22.0 0.72 2.5 796.3 0.0 2,-2 1.0 47 19.0 PRINCIPAL:1 ENSMUSG00000032009 Sesn3 ENSMUST00000209106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032009 Sesn3 ENSMUST00000208222 ENSMUSP00000146362 TRANSLATION protein_coding - CCDS22820.1 1 492.0 0.0 4.15 7.3 668.3 0.0 -4,-2 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000032009 Sesn3 ENSMUST00000209145 - NO_TRANSLATION retained_intron ENSMUSG00000032009 Sesn3 ENSMUST00000209187 ENSMUSP00000146784 TRANSLATION protein_coding - - 5 353.0 0.0 2.75 1.0 483.9 0.0 -4,-2 0.0152 2 3.198 MINOR ENSMUSG00000032009 Sesn3 ENSMUST00000207207 - NO_TRANSLATION retained_intron ENSMUSG00000032009 Sesn3 ENSMUST00000208142 - NO_TRANSLATION retained_intron ENSMUSG00000032009 Sesn3 ENSMUST00000034507 ENSMUSP00000034507 TRANSLATION protein_coding - - 5 414.0 0.0 3.75 5.0 632.3 0.0 -4,-7 0.4392 3 10.312 MINOR ENSMUSG00000047990 C2cd4a ENSMUST00000054500 ENSMUSP00000058286 TRANSLATION protein_coding - CCDS52850.1 5 334.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.9019 1 0.0 PRINCIPAL:1 ENSMUSG00000010045 Tmem115 ENSMUST00000010189 ENSMUSP00000010189 TRANSLATION protein_coding - CCDS23490.1 1 350.0 0.0 0.6 20.0 100.4 0.0 0,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000066382 Iqcf5 ENSMUST00000085113 ENSMUSP00000082194 TRANSLATION protein_coding - CCDS52912.1 1 148.0 0.0 1.0 7.0 45.6 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049932 H2ax ENSMUST00000052686 ENSMUSP00000051432 TRANSLATION protein_coding - CCDS23105.1 - 143.0 0.0 1.0 25.6 133.2 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032204 Aqp9 ENSMUST00000074465 ENSMUSP00000074063 TRANSLATION protein_coding - CCDS23325.1 1 295.0 0.0 5.8 10.3 177.3 10.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000032204 Aqp9 ENSMUST00000138364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032204 Aqp9 ENSMUST00000113570 ENSMUSP00000109200 TRANSLATION protein_coding - CCDS23325.1 5 295.0 0.0 5.8 10.3 177.3 10.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000032204 Aqp9 ENSMUST00000060917 ENSMUSP00000050127 TRANSLATION protein_coding - CCDS72270.1 1 321.0 0.0 5.0 0.0 156.9 10.0 1,-4 0.0451 1 9.174 MINOR ENSMUSG00000032204 Aqp9 ENSMUST00000135892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032204 Aqp9 ENSMUST00000136798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032204 Aqp9 ENSMUST00000139495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032204 Aqp9 ENSMUST00000144618 ENSMUSP00000116785 TRANSLATION nonsense_mediated_decay - - 1 192.0 0.0 3.9875 0.0 97.5 5.0 -4,-7 0.0044 - -2.0 MINOR ENSMUSG00000032204 Aqp9 ENSMUST00000133239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032204 Aqp9 ENSMUST00000153050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032380 Dapk2 ENSMUST00000129778 - NO_TRANSLATION retained_intron ENSMUSG00000032380 Dapk2 ENSMUST00000034944 ENSMUSP00000034944 TRANSLATION protein_coding - CCDS23303.1 1 370.0 25.0 8.08 4.1 250.3 0.0 -4,-6 1.0 4 19.59 PRINCIPAL:1 ENSMUSG00000032380 Dapk2 ENSMUST00000129442 - NO_TRANSLATION retained_intron ENSMUSG00000032380 Dapk2 ENSMUST00000132987 ENSMUSP00000117134 TRANSLATION nonsense_mediated_decay start - 5 55.0 2.0 1.0 0.0 49.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032380 Dapk2 ENSMUST00000238682 ENSMUSP00000158747 TRANSLATION protein_coding - - - 490.0 25.0 6.33 4.9 250.3 0.0 -4,-6 0.605 4 16.502 MINOR ENSMUSG00000041837 Pdcd7 ENSMUST00000215470 ENSMUSP00000151141 TRANSLATION protein_coding start - 5 280.0 0.0 3.35 0.0 297.7 0.0 -4,0 0.0104 4 -2.0 MINOR ENSMUSG00000041837 Pdcd7 ENSMUST00000214433 ENSMUSP00000148947 TRANSLATION protein_coding start/stop - 5 287.0 0.0 3.5 0.0 327.5 0.0 -4,-2 0.0279 3 -2.0 MINOR ENSMUSG00000041837 Pdcd7 ENSMUST00000048184 ENSMUSP00000035515 TRANSLATION protein_coding - CCDS40670.1 1 484.0 0.0 3.5 3.5 382.7 0.0 -4,-2 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000032235 Ice2 ENSMUST00000142743 - NO_TRANSLATION retained_intron ENSMUSG00000032235 Ice2 ENSMUST00000145538 ENSMUSP00000122566 TRANSLATION protein_coding stop - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0006 - -2.0 MINOR ENSMUSG00000032235 Ice2 ENSMUST00000125938 ENSMUSP00000117768 TRANSLATION protein_coding stop - 2 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032235 Ice2 ENSMUST00000117246 ENSMUSP00000112700 TRANSLATION protein_coding - - 1 141.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000032235 Ice2 ENSMUST00000117610 ENSMUSP00000112455 TRANSLATION protein_coding - - 1 98.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000032235 Ice2 ENSMUST00000151667 - NO_TRANSLATION retained_intron ENSMUSG00000032235 Ice2 ENSMUST00000034761 ENSMUSP00000034761 TRANSLATION protein_coding - CCDS23315.1 1 988.0 0.0 0.0 0.0 276.7 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000032235 Ice2 ENSMUST00000131233 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032235 Ice2 ENSMUST00000146368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032235 Ice2 ENSMUST00000147558 - NO_TRANSLATION retained_intron ENSMUSG00000070298 Trcg1 ENSMUST00000093837 ENSMUSP00000091357 TRANSLATION protein_coding - CCDS23218.1 5 825.0 0.0 5.5 0.0 0.0 0.0 1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000059189 Or8b49 ENSMUST00000081095 ENSMUSP00000079876 TRANSLATION protein_coding - CCDS23018.1 3 312.0 0.0 1.0 11.4 164.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032481 Smarcc1 ENSMUST00000088716 ENSMUSP00000086094 TRANSLATION protein_coding - CCDS23561.1 1 1104.0 0.0 12.35 0.0 1008.8 0.0 -2,-4 0.9317 11 8.0 ALTERNATIVE:2 ENSMUSG00000032481 Smarcc1 ENSMUST00000198211 ENSMUSP00000143199 TRANSLATION protein_coding start - 3 49.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032481 Smarcc1 ENSMUST00000199896 ENSMUSP00000143550 TRANSLATION protein_coding - - 1 1098.0 0.0 12.35 0.0 1008.8 0.0 -2,-4 1.0 11 8.0 PRINCIPAL:4 ENSMUSG00000032481 Smarcc1 ENSMUST00000200237 - NO_TRANSLATION retained_intron ENSMUSG00000032481 Smarcc1 ENSMUST00000200426 - NO_TRANSLATION retained_intron ENSMUSG00000032481 Smarcc1 ENSMUST00000197480 ENSMUSP00000142629 TRANSLATION protein_coding - - 1 485.0 0.0 8.6 0.0 645.7 0.0 -2,-4 0.0229 4 0.0 MINOR ENSMUSG00000032481 Smarcc1 ENSMUST00000098355 ENSMUSP00000095958 TRANSLATION protein_coding stop - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032481 Smarcc1 ENSMUST00000197984 ENSMUSP00000142611 TRANSLATION protein_coding - - 1 1075.0 0.0 12.35 0.0 1008.8 0.0 -2,-4 0.5478 11 8.0 ALTERNATIVE:2 ENSMUSG00000032481 Smarcc1 ENSMUST00000198667 - NO_TRANSLATION retained_intron ENSMUSG00000032565 Nudt16 ENSMUST00000190375 - NO_TRANSLATION retained_intron ENSMUSG00000032565 Nudt16 ENSMUST00000186933 - NO_TRANSLATION retained_intron ENSMUSG00000032565 Nudt16 ENSMUST00000186925 ENSMUSP00000140590 TRANSLATION protein_coding start - 3 191.0 13.0 3.33 0.0 0.0 0.0 -4,-5 0.131 7 -2.0 MINOR ENSMUSG00000032565 Nudt16 ENSMUST00000185533 ENSMUSP00000140976 TRANSLATION protein_coding start - 5 66.0 5.0 1.33 0.0 0.0 0.0 -4,-5 0.006 3 -2.0 MINOR ENSMUSG00000032565 Nudt16 ENSMUST00000035179 ENSMUSP00000035179 TRANSLATION protein_coding - CCDS40751.1 1 195.0 13.0 3.33 0.0 0.0 0.0 -4,-5 0.9212 8 12.0 PRINCIPAL:1 ENSMUSG00000049493 Pls1 ENSMUST00000135816 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049493 Pls1 ENSMUST00000093800 ENSMUSP00000091317 TRANSLATION protein_coding - CCDS23412.1 1 630.0 12.0 13.85 24.9 327.5 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000049493 Pls1 ENSMUST00000119760 ENSMUSP00000113200 TRANSLATION protein_coding stop - 3 138.0 12.0 2.1 0.0 43.7 0.0 -4,-5 0.0005 6 -2.0 MINOR ENSMUSG00000002031 Ift46 ENSMUST00000118186 ENSMUSP00000113845 TRANSLATION protein_coding - CCDS23119.1 1 301.0 0.0 2.405 8.8 343.0 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000002031 Ift46 ENSMUST00000238800 ENSMUSP00000158916 TRANSLATION protein_coding - - - 352.0 0.0 2.405 0.0 343.0 0.0 -4,-7 0.0414 4 12.0 MINOR ENSMUSG00000002031 Ift46 ENSMUST00000143654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002031 Ift46 ENSMUST00000142586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002031 Ift46 ENSMUST00000133167 - NO_TRANSLATION retained_intron ENSMUSG00000002031 Ift46 ENSMUST00000151905 ENSMUSP00000116729 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002031 Ift46 ENSMUST00000002099 ENSMUSP00000002099 TRANSLATION protein_coding - CCDS23119.1 1 301.0 0.0 2.405 8.8 343.0 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000002031 Ift46 ENSMUST00000124534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002031 Ift46 ENSMUST00000125877 ENSMUSP00000122682 TRANSLATION protein_coding stop - 3 113.0 0.0 0.0 0.0 91.3 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000002031 Ift46 ENSMUST00000239014 ENSMUSP00000159011 TRANSLATION protein_coding - CCDS23119.1 - 301.0 0.0 2.405 8.8 343.0 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000002031 Ift46 ENSMUST00000154090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002031 Ift46 ENSMUST00000149020 - NO_TRANSLATION retained_intron ENSMUSG00000002031 Ift46 ENSMUST00000147559 ENSMUSP00000118412 TRANSLATION protein_coding stop - 5 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002031 Ift46 ENSMUST00000128150 ENSMUSP00000120480 TRANSLATION protein_coding stop - 5 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002031 Ift46 ENSMUST00000214854 ENSMUSP00000149271 TRANSLATION protein_coding stop - 3 188.0 0.0 0.0 0.0 205.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000051243 Islr2 ENSMUST00000216359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051243 Islr2 ENSMUST00000170421 ENSMUSP00000127228 TRANSLATION protein_coding - CCDS23238.1 3 745.0 0.0 3.29 1.4 96.3 2.0 4,-1 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000051243 Islr2 ENSMUST00000214647 ENSMUSP00000150118 TRANSLATION protein_coding stop - 2 188.0 0.0 3.29 0.0 96.3 0.0 4,-1 0.1069 3 -2.0 MINOR ENSMUSG00000051243 Islr2 ENSMUST00000163897 ENSMUSP00000130322 TRANSLATION protein_coding - CCDS23238.1 2 745.0 0.0 3.29 1.4 96.3 2.0 4,-1 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000051243 Islr2 ENSMUST00000215950 ENSMUSP00000149095 TRANSLATION protein_coding - CCDS23238.1 1 745.0 0.0 3.29 1.4 96.3 2.0 4,-1 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000051243 Islr2 ENSMUST00000213349 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051243 Islr2 ENSMUST00000216231 ENSMUSP00000149680 TRANSLATION protein_coding stop - 3 127.0 0.0 1.24 0.0 48.4 0.0 4,-1 0.0 2 -2.0 MINOR ENSMUSG00000051243 Islr2 ENSMUST00000213495 - NO_TRANSLATION retained_intron ENSMUSG00000051243 Islr2 ENSMUST00000114144 ENSMUSP00000109781 TRANSLATION protein_coding - CCDS23238.1 2 745.0 0.0 3.29 1.4 96.3 2.0 4,-1 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000051243 Islr2 ENSMUST00000217427 ENSMUSP00000151098 TRANSLATION protein_coding stop - 3 141.0 0.0 1.86 0.0 48.4 0.0 4,-1 0.0008 2 -2.0 MINOR ENSMUSG00000051243 Islr2 ENSMUST00000163200 ENSMUSP00000130879 TRANSLATION protein_coding - CCDS52812.1 1 789.0 0.0 3.29 0.0 96.3 2.0 -1,1 0.4324 13 8.0 ALTERNATIVE:2 ENSMUSG00000051243 Islr2 ENSMUST00000216297 ENSMUSP00000151153 TRANSLATION protein_coding stop - 2 154.0 0.0 2.36 0.0 48.4 0.0 4,-1 0.0008 3 -2.0 MINOR ENSMUSG00000051243 Islr2 ENSMUST00000165276 ENSMUSP00000129328 TRANSLATION protein_coding - CCDS23238.1 2 745.0 0.0 3.29 1.4 96.3 2.0 4,-1 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000051243 Islr2 ENSMUST00000217050 ENSMUSP00000149920 TRANSLATION protein_coding stop - 3 179.0 0.0 2.96 0.0 91.2 0.0 4,-1 0.0366 3 -2.0 MINOR ENSMUSG00000051243 Islr2 ENSMUST00000217158 - NO_TRANSLATION retained_intron ENSMUSG00000051243 Islr2 ENSMUST00000214649 ENSMUSP00000149195 TRANSLATION protein_coding stop - 2 133.0 0.0 1.2 0.0 48.4 0.0 4,-1 0.0008 2 -2.0 MINOR ENSMUSG00000051243 Islr2 ENSMUST00000217512 ENSMUSP00000150877 TRANSLATION protein_coding stop - 3 65.0 0.0 0.4 0.0 0.0 0.0 4,-1 0.001 - -2.0 MINOR ENSMUSG00000066905 Or7e169 ENSMUST00000212353 ENSMUSP00000148568 TRANSLATION protein_coding - CCDS22865.1 - 317.0 0.0 2.0 0.1 189.1 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066905 Or7e169 ENSMUST00000086482 ENSMUSP00000130735 TRANSLATION protein_coding - CCDS22865.1 2 317.0 0.0 2.0 0.1 189.1 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000066905 Or7e169 ENSMUST00000211924 ENSMUSP00000148658 TRANSLATION protein_coding stop - 3 165.0 0.0 1.0 0.0 90.6 3.0 -3,-5 0.0024 - -2.0 MINOR ENSMUSG00000032118 Fez1 ENSMUST00000162235 ENSMUSP00000124185 TRANSLATION protein_coding start - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000032118 Fez1 ENSMUST00000162633 ENSMUSP00000124634 TRANSLATION protein_coding stop - 5 123.0 0.0 0.0 0.0 87.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032118 Fez1 ENSMUST00000160041 ENSMUSP00000124648 TRANSLATION nonsense_mediated_decay start - 3 91.0 0.0 0.0 0.0 56.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032118 Fez1 ENSMUST00000161500 ENSMUSP00000123762 TRANSLATION protein_coding stop - 5 167.0 0.0 0.0 0.0 115.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032118 Fez1 ENSMUST00000159137 - NO_TRANSLATION retained_intron ENSMUSG00000032118 Fez1 ENSMUST00000216539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032118 Fez1 ENSMUST00000163816 ENSMUSP00000126072 TRANSLATION protein_coding - CCDS40581.1 1 392.0 0.0 0.0 19.6 278.0 0.0 -4,-5 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000032118 Fez1 ENSMUST00000214772 ENSMUSP00000149910 TRANSLATION protein_coding stop - 3 78.0 0.0 0.0 0.0 29.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032118 Fez1 ENSMUST00000034630 ENSMUSP00000034630 TRANSLATION protein_coding - CCDS40581.1 1 392.0 0.0 0.0 19.6 278.0 0.0 -4,-5 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000032118 Fez1 ENSMUST00000161978 ENSMUSP00000125475 TRANSLATION protein_coding start - 1 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032583 Mon1a ENSMUST00000191906 ENSMUSP00000141516 TRANSLATION protein_coding - - 2 461.0 0.0 1.6 0.0 374.8 0.0 -4,-6 0.0216 9 2.418 MINOR ENSMUSG00000032583 Mon1a ENSMUST00000035202 ENSMUSP00000035202 TRANSLATION protein_coding - CCDS23508.1 1 556.0 0.0 3.6 11.5 467.8 0.0 -4,-6 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000006675 P4htm ENSMUST00000194900 - NO_TRANSLATION retained_intron ENSMUSG00000006675 P4htm ENSMUST00000191674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006675 P4htm ENSMUST00000006853 ENSMUSP00000006853 TRANSLATION protein_coding - CCDS23533.1 1 503.0 11.0 7.75 3.5 87.1 1.0 -4,-6 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000006675 P4htm ENSMUST00000195181 - NO_TRANSLATION retained_intron ENSMUSG00000006675 P4htm ENSMUST00000193621 ENSMUSP00000141843 TRANSLATION protein_coding - - 1 225.0 4.0 1.75 0.0 0.0 1.0 -4,-6 0.0024 1 1.332 MINOR ENSMUSG00000006675 P4htm ENSMUST00000192080 ENSMUSP00000141993 TRANSLATION protein_coding start - 2 144.0 3.0 1.75 0.0 0.0 0.0 0,-3 0.0016 1 -2.0 MINOR ENSMUSG00000079227 Ccr5 ENSMUST00000168179 ENSMUSP00000129848 TRANSLATION nonsense_mediated_decay - - 3 54.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079227 Ccr5 ENSMUST00000169553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079227 Ccr5 ENSMUST00000171579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079227 Ccr5 ENSMUST00000111442 ENSMUSP00000107069 TRANSLATION protein_coding - CCDS40821.1 1 354.0 0.0 2.2 10.7 162.9 8.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000079227 Ccr5 ENSMUST00000171499 ENSMUSP00000127328 TRANSLATION protein_coding stop - 5 123.0 0.0 1.2 0.0 65.3 4.0 -4,-7 0.0021 - -2.0 MINOR ENSMUSG00000079227 Ccr5 ENSMUST00000097855 ENSMUSP00000149719 TRANSLATION nonsense_mediated_decay start - 3 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031938 4931406C07Rik ENSMUST00000215741 - NO_TRANSLATION retained_intron ENSMUSG00000031938 4931406C07Rik ENSMUST00000217042 ENSMUSP00000150223 TRANSLATION protein_coding - - 3 56.0 0.0 1.5 0.0 35.8 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000031938 4931406C07Rik ENSMUST00000034414 ENSMUSP00000034414 TRANSLATION protein_coding - CCDS22835.1 1 315.0 0.0 7.25 11.4 414.0 0.0 -4,-6 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000031938 4931406C07Rik ENSMUST00000180339 ENSMUSP00000136717 TRANSLATION protein_coding - CCDS22835.1 1 315.0 0.0 7.25 11.4 414.0 0.0 -4,-6 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000031938 4931406C07Rik ENSMUST00000216955 ENSMUSP00000149878 TRANSLATION protein_coding - - 1 282.0 0.0 6.25 2.0 365.6 0.0 -4,-5 0.0369 13 7.386 MINOR ENSMUSG00000031938 4931406C07Rik ENSMUST00000216077 - NO_TRANSLATION retained_intron ENSMUSG00000031938 4931406C07Rik ENSMUST00000216073 - NO_TRANSLATION retained_intron ENSMUSG00000031938 4931406C07Rik ENSMUST00000178977 ENSMUSP00000136335 TRANSLATION protein_coding - CCDS22835.1 1 315.0 0.0 7.25 11.4 414.0 0.0 -4,-6 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000031938 4931406C07Rik ENSMUST00000213317 - NO_TRANSLATION retained_intron ENSMUSG00000056724 Nbeal2 ENSMUST00000123996 ENSMUSP00000122014 TRANSLATION nonsense_mediated_decay start - 5 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000056724 Nbeal2 ENSMUST00000131017 ENSMUSP00000114660 TRANSLATION protein_coding start - 5 1073.0 0.0 9.7 0.0 850.5 0.0 -4,-6 0.2024 16 -2.0 MINOR ENSMUSG00000056724 Nbeal2 ENSMUST00000138072 - NO_TRANSLATION retained_intron ENSMUSG00000056724 Nbeal2 ENSMUST00000167320 ENSMUSP00000128586 TRANSLATION protein_coding - CCDS52939.1 1 2750.0 0.0 9.7 0.1 1003.4 0.0 -4,-5 1.0 40 8.0 PRINCIPAL:4 ENSMUSG00000056724 Nbeal2 ENSMUST00000196488 ENSMUSP00000143265 TRANSLATION protein_coding - - 5 2716.0 0.0 9.7 0.7 1003.4 0.0 -4,-5 0.5832 40 8.0 ALTERNATIVE:2 ENSMUSG00000056724 Nbeal2 ENSMUST00000126088 - NO_TRANSLATION retained_intron ENSMUSG00000056724 Nbeal2 ENSMUST00000149089 ENSMUSP00000119254 TRANSLATION protein_coding stop - 5 593.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0056 10 -2.0 MINOR ENSMUSG00000056724 Nbeal2 ENSMUST00000133191 ENSMUSP00000121373 TRANSLATION protein_coding - - 5 2743.0 0.0 9.7 0.7 1003.4 0.0 -4,-5 0.9033 40 8.0 ALTERNATIVE:2 ENSMUSG00000056724 Nbeal2 ENSMUST00000130024 ENSMUSP00000118061 TRANSLATION protein_coding start - 5 2032.0 0.0 9.7 0.0 995.2 0.0 -4,-7 0.3928 29 -2.0 MINOR ENSMUSG00000056724 Nbeal2 ENSMUST00000129095 - NO_TRANSLATION retained_intron ENSMUSG00000056724 Nbeal2 ENSMUST00000153960 - NO_TRANSLATION retained_intron ENSMUSG00000050730 Arhgap42 ENSMUST00000093893 ENSMUSP00000091419 TRANSLATION protein_coding - CCDS52720.1 1 841.0 0.0 9.357 1.2 319.5 0.0 -4,-5 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000050730 Arhgap42 ENSMUST00000183182 ENSMUSP00000138500 TRANSLATION protein_coding - - 1 139.0 0.0 0.65 0.0 100.4 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000050730 Arhgap42 ENSMUST00000182617 - NO_TRANSLATION retained_intron ENSMUSG00000050730 Arhgap42 ENSMUST00000215397 ENSMUSP00000149949 TRANSLATION protein_coding stop - 3 180.0 0.0 0.65 0.0 186.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032555 Topbp1 ENSMUST00000187065 ENSMUSP00000139773 TRANSLATION protein_coding stop - 5 130.0 0.0 3.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032555 Topbp1 ENSMUST00000185721 ENSMUSP00000140906 TRANSLATION protein_coding start/stop - 3 257.0 0.0 2.0 0.0 38.8 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000032555 Topbp1 ENSMUST00000035164 ENSMUSP00000035164 TRANSLATION protein_coding - CCDS23453.1 1 1515.0 0.0 19.04 0.0 275.7 0.0 -4,-5 1.0 23 12.0 PRINCIPAL:1 ENSMUSG00000032555 Topbp1 ENSMUST00000189349 - NO_TRANSLATION retained_intron ENSMUSG00000032555 Topbp1 ENSMUST00000189631 - NO_TRANSLATION retained_intron ENSMUSG00000032555 Topbp1 ENSMUST00000190712 - NO_TRANSLATION retained_intron ENSMUSG00000032555 Topbp1 ENSMUST00000185305 ENSMUSP00000140862 TRANSLATION nonsense_mediated_decay start - 3 66.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032555 Topbp1 ENSMUST00000188840 - NO_TRANSLATION retained_intron ENSMUSG00000032555 Topbp1 ENSMUST00000186897 - NO_TRANSLATION retained_intron ENSMUSG00000032555 Topbp1 ENSMUST00000185972 - NO_TRANSLATION retained_intron ENSMUSG00000032497 Lrrfip2 ENSMUST00000098340 ENSMUSP00000095944 TRANSLATION protein_coding - CCDS23583.1 1 400.0 0.0 2.55 16.3 361.3 0.0 -4,-6 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000032497 Lrrfip2 ENSMUST00000198127 - NO_TRANSLATION retained_intron ENSMUSG00000032497 Lrrfip2 ENSMUST00000196981 ENSMUSP00000142851 TRANSLATION protein_coding - - 5 424.0 0.0 2.55 16.3 349.1 0.0 -4,-6 0.7558 11 10.0 MINOR ENSMUSG00000032497 Lrrfip2 ENSMUST00000200094 ENSMUSP00000142471 TRANSLATION protein_coding stop - 3 173.0 0.0 1.0 0.0 162.6 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000032497 Lrrfip2 ENSMUST00000198986 ENSMUSP00000143756 TRANSLATION protein_coding stop - 5 173.0 0.0 2.55 0.0 191.7 0.0 -4,-5 0.0163 5 -2.0 MINOR ENSMUSG00000032497 Lrrfip2 ENSMUST00000196703 ENSMUSP00000142753 TRANSLATION protein_coding start/stop - 5 149.0 0.0 0.0 0.0 73.8 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000032497 Lrrfip2 ENSMUST00000197241 ENSMUSP00000142816 TRANSLATION protein_coding - CCDS52941.1 1 415.0 0.0 2.55 1.0 344.2 0.0 -4,-6 0.2253 10 6.0 MINOR ENSMUSG00000032497 Lrrfip2 ENSMUST00000239186 ENSMUSP00000159250 TRANSLATION protein_coding - - - 722.0 0.0 2.55 5.6 197.4 0.0 -4,-5 0.2497 16 7.204 MINOR ENSMUSG00000032497 Lrrfip2 ENSMUST00000216430 ENSMUSP00000149212 TRANSLATION protein_coding - - 5 403.0 0.0 2.55 0.0 273.9 0.0 -4,-7 0.0525 8 6.0 MINOR ENSMUSG00000032497 Lrrfip2 ENSMUST00000239333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032497 Lrrfip2 ENSMUST00000196906 - NO_TRANSLATION retained_intron ENSMUSG00000032497 Lrrfip2 ENSMUST00000239196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032497 Lrrfip2 ENSMUST00000197540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032497 Lrrfip2 ENSMUST00000197256 ENSMUSP00000143322 TRANSLATION protein_coding - - 5 437.0 0.0 2.55 1.3 332.0 0.0 -4,-6 0.0881 10 6.08 MINOR ENSMUSG00000032497 Lrrfip2 ENSMUST00000035078 ENSMUSP00000035078 TRANSLATION protein_coding - CCDS52941.1 5 415.0 0.0 2.55 1.0 344.2 0.0 -4,-6 0.2253 10 6.0 MINOR ENSMUSG00000032497 Lrrfip2 ENSMUST00000217341 ENSMUSP00000149845 TRANSLATION protein_coding - - 5 670.0 0.0 2.55 1.0 218.8 0.0 -4,-6 0.0972 16 6.0 MINOR ENSMUSG00000032497 Lrrfip2 ENSMUST00000199711 - NO_TRANSLATION retained_intron ENSMUSG00000032497 Lrrfip2 ENSMUST00000217117 ENSMUSP00000151145 TRANSLATION protein_coding - - 5 373.0 0.0 2.55 0.0 293.8 0.0 -4,-6 0.0183 9 6.0 MINOR ENSMUSG00000032336 Nptn ENSMUST00000177020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032336 Nptn ENSMUST00000177021 - NO_TRANSLATION retained_intron ENSMUSG00000032336 Nptn ENSMUST00000177292 ENSMUSP00000135199 TRANSLATION protein_coding - - 5 397.0 0.0 6.0495 3.8 124.3 2.0 4,-1 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000032336 Nptn ENSMUST00000176557 ENSMUSP00000135541 TRANSLATION protein_coding - CCDS81009.1 1 277.0 0.0 5.0495 2.9 82.1 2.0 4,-1 0.2971 10 8.149 MINOR ENSMUSG00000032336 Nptn ENSMUST00000177380 ENSMUSP00000135886 TRANSLATION non_stop_decay stop - 2 122.0 0.0 2.0495 0.0 32.3 0.0 4,-1 0.0 5 -2.0 MINOR ENSMUSG00000032336 Nptn ENSMUST00000176916 ENSMUSP00000134977 TRANSLATION nonsense_mediated_decay - - 1 171.0 0.0 3.132 0.0 49.8 2.0 -4,-5 0.0005 4 -2.0 MINOR ENSMUSG00000032336 Nptn ENSMUST00000175945 ENSMUSP00000135576 TRANSLATION nonsense_mediated_decay - - 3 60.0 0.0 0.0495 0.0 0.0 0.0 3,-1 0.0 - -2.0 MINOR ENSMUSG00000032336 Nptn ENSMUST00000176250 ENSMUSP00000135250 TRANSLATION protein_coding - - 1 171.0 0.0 3.132 0.0 49.8 2.0 -4,-5 0.0005 4 1.698 MINOR ENSMUSG00000032336 Nptn ENSMUST00000085651 ENSMUSP00000082793 TRANSLATION protein_coding - CCDS23245.1 1 281.0 0.0 5.0495 2.9 82.1 2.0 4,-1 0.2971 9 8.149 MINOR ENSMUSG00000032336 Nptn ENSMUST00000176126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032336 Nptn ENSMUST00000177064 ENSMUSP00000135316 TRANSLATION protein_coding - - 5 193.0 0.0 3.0495 0.0 49.8 2.0 4,-1 0.0022 4 1.53 MINOR ENSMUSG00000032336 Nptn ENSMUST00000176896 ENSMUSP00000134761 TRANSLATION nonsense_mediated_decay start - 5 221.0 0.0 4.0495 0.0 82.1 0.0 4,-1 0.0 8 -2.0 MINOR ENSMUSG00000032400 Zwilch ENSMUST00000130127 ENSMUSP00000116187 TRANSLATION protein_coding stop - 3 148.0 0.0 3.17 0.0 79.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032400 Zwilch ENSMUST00000176848 - NO_TRANSLATION retained_intron ENSMUSG00000032400 Zwilch ENSMUST00000143421 ENSMUSP00000135705 TRANSLATION nonsense_mediated_decay start - 3 38.0 0.0 1.0 0.0 36.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000032400 Zwilch ENSMUST00000177045 ENSMUSP00000135328 TRANSLATION protein_coding stop - 1 303.0 0.0 3.5615 0.0 306.3 0.0 -4,-5 0.0012 2 -2.0 MINOR ENSMUSG00000032400 Zwilch ENSMUST00000152824 ENSMUSP00000115556 TRANSLATION nonsense_mediated_decay start - 3 51.0 0.0 1.33 0.0 68.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032400 Zwilch ENSMUST00000176378 ENSMUSP00000134782 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 2.165 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032400 Zwilch ENSMUST00000176794 ENSMUSP00000134850 TRANSLATION protein_coding - - 5 565.0 0.0 10.4715 0.0 607.8 0.0 -4,-6 0.0826 4 8.556 MINOR ENSMUSG00000032400 Zwilch ENSMUST00000148428 - NO_TRANSLATION retained_intron ENSMUSG00000032400 Zwilch ENSMUST00000176299 ENSMUSP00000135585 TRANSLATION protein_coding - - 5 475.0 0.0 8.579 5.9 593.0 0.0 -4,-7 0.4123 4 5.481 MINOR ENSMUSG00000032400 Zwilch ENSMUST00000124301 ENSMUSP00000134966 TRANSLATION nonsense_mediated_decay - - 5 75.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032400 Zwilch ENSMUST00000151428 - NO_TRANSLATION retained_intron ENSMUSG00000032400 Zwilch ENSMUST00000122091 ENSMUSP00000112790 TRANSLATION protein_coding - - 1 589.0 0.0 9.909 10.2 665.2 0.0 -4,-6 1.0 5 13.872 PRINCIPAL:1 ENSMUSG00000032400 Zwilch ENSMUST00000138075 - NO_TRANSLATION retained_intron ENSMUSG00000058587 Tmod3 ENSMUST00000217459 - NO_TRANSLATION retained_intron ENSMUSG00000058587 Tmod3 ENSMUST00000214171 ENSMUSP00000149300 TRANSLATION protein_coding stop - 3 107.0 0.0 1.25 0.0 153.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000058587 Tmod3 ENSMUST00000215821 ENSMUSP00000148851 TRANSLATION protein_coding - - 3 106.0 0.0 1.0 0.0 139.3 0.0 -4,-5 0.0 3 2.202 MINOR ENSMUSG00000058587 Tmod3 ENSMUST00000214424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058587 Tmod3 ENSMUST00000072232 ENSMUSP00000072087 TRANSLATION protein_coding - CCDS23344.1 1 352.0 0.0 6.014 31.7 202.6 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000058587 Tmod3 ENSMUST00000214733 - NO_TRANSLATION retained_intron ENSMUSG00000032560 Dnajc13 ENSMUST00000186788 ENSMUSP00000139804 TRANSLATION protein_coding - - 1 2248.0 0.0 1.11 20.4 110.8 0.0 -4,-6 0.8757 59 12.0 ALTERNATIVE:1 ENSMUSG00000032560 Dnajc13 ENSMUST00000035170 ENSMUSP00000035170 TRANSLATION protein_coding - CCDS52904.1 5 2243.0 0.0 1.11 20.4 110.8 0.0 -4,-6 1.0 60 12.0 PRINCIPAL:3 ENSMUSG00000032560 Dnajc13 ENSMUST00000188139 ENSMUSP00000150468 TRANSLATION protein_coding start - 5 96.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000032560 Dnajc13 ENSMUST00000188998 ENSMUSP00000140867 TRANSLATION protein_coding start - 2 184.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 6 -2.0 MINOR ENSMUSG00000032560 Dnajc13 ENSMUST00000189299 - NO_TRANSLATION retained_intron ENSMUSG00000032560 Dnajc13 ENSMUST00000185503 ENSMUSP00000140571 TRANSLATION nonsense_mediated_decay start - 5 174.0 0.0 0.0 0.0 59.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000032560 Dnajc13 ENSMUST00000189813 - NO_TRANSLATION retained_intron ENSMUSG00000032560 Dnajc13 ENSMUST00000189103 - NO_TRANSLATION retained_intron ENSMUSG00000032560 Dnajc13 ENSMUST00000188425 - NO_TRANSLATION retained_intron ENSMUSG00000032560 Dnajc13 ENSMUST00000188885 ENSMUSP00000141056 TRANSLATION nonsense_mediated_decay start - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032560 Dnajc13 ENSMUST00000190926 - NO_TRANSLATION retained_intron ENSMUSG00000032560 Dnajc13 ENSMUST00000188592 - NO_TRANSLATION retained_intron ENSMUSG00000032560 Dnajc13 ENSMUST00000191199 - NO_TRANSLATION retained_intron ENSMUSG00000032560 Dnajc13 ENSMUST00000190600 - NO_TRANSLATION retained_intron ENSMUSG00000038264 Sema7a ENSMUST00000214314 ENSMUSP00000148893 TRANSLATION nonsense_mediated_decay - - 3 86.0 0.0 0.4 0.0 0.0 0.0 -1,2 0.0004 - -2.0 MINOR ENSMUSG00000038264 Sema7a ENSMUST00000043059 ENSMUSP00000042211 TRANSLATION protein_coding - CCDS23235.1 1 664.0 0.0 12.25 5.4 342.7 0.0 -1,2 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000037286 Stag1 ENSMUST00000129269 ENSMUSP00000116205 TRANSLATION protein_coding - CCDS23441.1 1 1258.0 0.0 24.17 21.3 132.5 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000037286 Stag1 ENSMUST00000146312 ENSMUSP00000116597 TRANSLATION protein_coding stop - 1 196.0 0.0 2.25 0.0 125.5 0.0 -4,-5 0.0016 1 -2.0 MINOR ENSMUSG00000037286 Stag1 ENSMUST00000123302 ENSMUSP00000117879 TRANSLATION nonsense_mediated_decay - - 1 424.0 0.0 8.91 0.0 132.5 0.0 -4,-5 0.0055 5 -2.0 MINOR ENSMUSG00000037286 Stag1 ENSMUST00000155108 ENSMUSP00000118952 TRANSLATION nonsense_mediated_decay - - 1 174.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037286 Stag1 ENSMUST00000122824 - NO_TRANSLATION retained_intron ENSMUSG00000037286 Stag1 ENSMUST00000144005 - NO_TRANSLATION retained_intron ENSMUSG00000037286 Stag1 ENSMUST00000149771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037286 Stag1 ENSMUST00000143955 ENSMUSP00000115460 TRANSLATION protein_coding start/stop - 5 285.0 0.0 5.63 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000037286 Stag1 ENSMUST00000143150 - NO_TRANSLATION retained_intron ENSMUSG00000037286 Stag1 ENSMUST00000143816 - NO_TRANSLATION retained_intron ENSMUSG00000037286 Stag1 ENSMUST00000123315 - NO_TRANSLATION retained_intron ENSMUSG00000037286 Stag1 ENSMUST00000146934 ENSMUSP00000120974 TRANSLATION protein_coding start - 5 869.0 0.0 15.76 0.0 0.0 0.0 -4,-5 0.0058 11 -2.0 MINOR ENSMUSG00000037286 Stag1 ENSMUST00000124487 ENSMUSP00000123595 TRANSLATION protein_coding stop - 5 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037286 Stag1 ENSMUST00000041418 ENSMUSP00000040724 TRANSLATION protein_coding - - 5 1221.0 0.0 24.17 2.3 132.5 0.0 -4,-5 0.3283 16 12.256 MINOR ENSMUSG00000037286 Stag1 ENSMUST00000138405 ENSMUSP00000116322 TRANSLATION nonsense_mediated_decay - - 1 306.0 0.0 5.75 0.0 132.5 0.0 -4,-5 0.0058 2 -2.0 MINOR ENSMUSG00000037286 Stag1 ENSMUST00000191345 - NO_TRANSLATION retained_intron ENSMUSG00000037286 Stag1 ENSMUST00000133388 ENSMUSP00000119637 TRANSLATION protein_coding stop - 3 144.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032572 Col6a4 ENSMUST00000149207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032572 Col6a4 ENSMUST00000137847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032572 Col6a4 ENSMUST00000218471 ENSMUSP00000151299 TRANSLATION nonsense_mediated_decay start - 5 134.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032572 Col6a4 ENSMUST00000121963 ENSMUSP00000112472 TRANSLATION protein_coding - CCDS52907.1 5 2309.0 15.0 4.2605 0.0 898.2 0.0 3,-2 1.0 56 18.0 PRINCIPAL:1 ENSMUSG00000057424 Or10d1c ENSMUST00000074211 ENSMUSP00000073835 TRANSLATION protein_coding - CCDS23034.1 - 310.0 0.0 1.0 10.5 163.9 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057424 Or10d1c ENSMUST00000216823 ENSMUSP00000150864 TRANSLATION protein_coding - CCDS23034.1 5 310.0 0.0 1.0 10.5 163.9 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057424 Or10d1c ENSMUST00000214324 ENSMUSP00000149799 TRANSLATION protein_coding - CCDS23034.1 5 310.0 0.0 1.0 10.5 163.9 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032386 Trip4 ENSMUST00000133747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032386 Trip4 ENSMUST00000143864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032386 Trip4 ENSMUST00000134338 ENSMUSP00000117648 TRANSLATION protein_coding stop - 5 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032386 Trip4 ENSMUST00000126517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032386 Trip4 ENSMUST00000119245 ENSMUSP00000112385 TRANSLATION protein_coding - CCDS23298.1 1 581.0 2.0 4.43 9.9 68.9 0.0 -4,-5 1.0 9 17.0 PRINCIPAL:1 ENSMUSG00000032386 Trip4 ENSMUST00000139346 - NO_TRANSLATION retained_intron ENSMUSG00000032386 Trip4 ENSMUST00000117083 ENSMUSP00000113949 TRANSLATION protein_coding - CCDS23298.1 1 581.0 2.0 4.43 9.9 68.9 0.0 -4,-5 1.0 9 17.0 PRINCIPAL:1 ENSMUSG00000032386 Trip4 ENSMUST00000122410 ENSMUSP00000112866 TRANSLATION protein_coding - CCDS52838.1 1 539.0 2.0 2.6 2.0 65.7 0.0 -4,-5 0.1434 8 10.4 MINOR ENSMUSG00000032386 Trip4 ENSMUST00000132380 - NO_TRANSLATION retained_intron ENSMUSG00000032386 Trip4 ENSMUST00000179395 ENSMUSP00000137304 TRANSLATION protein_coding - CCDS52838.1 5 539.0 2.0 2.6 2.0 65.7 0.0 -4,-5 0.1434 8 10.4 MINOR ENSMUSG00000032116 Stt3a ENSMUST00000143881 - NO_TRANSLATION retained_intron ENSMUSG00000032116 Stt3a ENSMUST00000138358 - NO_TRANSLATION retained_intron ENSMUSG00000032116 Stt3a ENSMUST00000133060 ENSMUSP00000120360 TRANSLATION protein_coding stop - 5 90.0 1.0 2.75 0.0 91.5 1.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000032116 Stt3a ENSMUST00000137994 - NO_TRANSLATION retained_intron ENSMUSG00000032116 Stt3a ENSMUST00000128270 ENSMUSP00000114527 TRANSLATION nonsense_mediated_decay - - 5 69.0 0.0 1.75 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000032116 Stt3a ENSMUST00000135934 ENSMUSP00000117794 TRANSLATION protein_coding start - 5 112.0 1.0 2.75 0.0 142.8 4.0 -4,-7 0.0022 1 -2.0 MINOR ENSMUSG00000032116 Stt3a ENSMUST00000217599 ENSMUSP00000149855 TRANSLATION protein_coding - - 5 60.0 0.0 1.75 0.0 0.0 1.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000032116 Stt3a ENSMUST00000215998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032116 Stt3a ENSMUST00000120381 ENSMUSP00000113116 TRANSLATION protein_coding - CCDS52768.1 1 705.0 3.0 15.18 34.0 534.5 12.0 -4,-7 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000032594 Ip6k1 ENSMUST00000177396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032594 Ip6k1 ENSMUST00000035214 ENSMUSP00000035214 TRANSLATION protein_coding - CCDS23514.1 1 433.0 12.0 2.0 9.9 217.7 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000032594 Ip6k1 ENSMUST00000167159 - NO_TRANSLATION retained_intron ENSMUSG00000032594 Ip6k1 ENSMUST00000175908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032594 Ip6k1 ENSMUST00000164395 ENSMUSP00000128534 TRANSLATION nonsense_mediated_decay - - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032594 Ip6k1 ENSMUST00000176566 ENSMUSP00000135350 TRANSLATION nonsense_mediated_decay start - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032594 Ip6k1 ENSMUST00000176613 ENSMUSP00000135587 TRANSLATION protein_coding start - 1 31.0 0.0 0.5 0.0 0.0 0.0 -3,-6 0.0003 - -2.0 MINOR ENSMUSG00000032594 Ip6k1 ENSMUST00000177158 ENSMUSP00000134754 TRANSLATION protein_coding start - 3 235.0 7.0 1.1 0.0 84.3 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000032594 Ip6k1 ENSMUST00000175874 ENSMUSP00000135747 TRANSLATION protein_coding stop - 5 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032594 Ip6k1 ENSMUST00000176854 ENSMUSP00000141232 TRANSLATION protein_coding - - 1 145.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000032436 Cmtm7 ENSMUST00000035009 ENSMUSP00000035009 TRANSLATION protein_coding - CCDS57710.1 1 167.0 0.0 2.15 5.4 55.9 4.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000032436 Cmtm7 ENSMUST00000216760 ENSMUSP00000149591 TRANSLATION protein_coding - - 1 63.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 0.0 MINOR ENSMUSG00000032436 Cmtm7 ENSMUST00000217056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032436 Cmtm7 ENSMUST00000084867 ENSMUSP00000081927 TRANSLATION protein_coding - CCDS57709.1 1 134.0 0.0 1.15 1.7 0.0 3.0 -4,-7 0.0867 1 3.528 MINOR ENSMUSG00000032436 Cmtm7 ENSMUST00000214604 - NO_TRANSLATION retained_intron ENSMUSG00000066510 Ankdd1a ENSMUST00000217646 ENSMUSP00000150130 TRANSLATION protein_coding stop - 5 508.0 0.0 8.6 22.4 178.7 0.0 -4,-5 1.0 2 -2.0 PRINCIPAL:5 ENSMUSG00000066510 Ankdd1a ENSMUST00000061766 ENSMUSP00000057040 TRANSLATION protein_coding start - 5 480.0 0.0 8.5 0.0 184.0 0.0 -4,-5 0.03 2 -2.0 ALTERNATIVE:2 ENSMUSG00000066510 Ankdd1a ENSMUST00000217144 - NO_TRANSLATION retained_intron ENSMUSG00000049305 Ccdc71 ENSMUST00000061209 ENSMUSP00000057891 TRANSLATION protein_coding - CCDS23527.1 1 433.0 0.0 0.0 0.1 548.1 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000049305 Ccdc71 ENSMUST00000193269 ENSMUSP00000141937 TRANSLATION protein_coding stop - 3 92.0 0.0 0.0 0.0 203.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000049305 Ccdc71 ENSMUST00000193170 ENSMUSP00000142230 TRANSLATION protein_coding - CCDS23527.1 1 433.0 0.0 0.0 0.1 548.1 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000025787 Tgm4 ENSMUST00000026893 ENSMUSP00000026893 TRANSLATION protein_coding - CCDS23653.1 1 670.0 4.0 13.998 0.1 208.2 0.0 -4,-6 1.0 29 16.0 PRINCIPAL:1 ENSMUSG00000025787 Tgm4 ENSMUST00000217607 ENSMUSP00000149061 TRANSLATION nonsense_mediated_decay - - 5 126.0 0.0 2.198 0.0 64.4 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000025787 Tgm4 ENSMUST00000143364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025787 Tgm4 ENSMUST00000214552 - NO_TRANSLATION retained_intron ENSMUSG00000025787 Tgm4 ENSMUST00000128572 - NO_TRANSLATION retained_intron ENSMUSG00000025787 Tgm4 ENSMUST00000215247 ENSMUSP00000149120 TRANSLATION protein_coding - - 2 246.0 1.0 3.998 0.0 67.1 0.0 -4,-5 0.0 11 1.0 MINOR ENSMUSG00000025787 Tgm4 ENSMUST00000171897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025893 Kbtbd3 ENSMUST00000049648 ENSMUSP00000050183 TRANSLATION protein_coding - CCDS22795.1 1 607.0 0.0 0.75 10.4 227.2 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000025893 Kbtbd3 ENSMUST00000212221 ENSMUSP00000148445 TRANSLATION protein_coding - CCDS22795.1 1 607.0 0.0 0.75 10.4 227.2 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000032368 Zic1 ENSMUST00000034927 ENSMUSP00000034927 TRANSLATION protein_coding - CCDS23403.1 1 447.0 21.0 1.9 31.5 67.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000032368 Zic1 ENSMUST00000173121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032368 Zic1 ENSMUST00000065360 ENSMUSP00000068858 TRANSLATION protein_coding - CCDS23403.1 1 447.0 21.0 1.9 31.5 67.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000032313 Tmem266 ENSMUST00000034862 ENSMUSP00000034862 TRANSLATION protein_coding - CCDS23203.1 1 538.0 0.0 2.8 7.1 28.8 3.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000032313 Tmem266 ENSMUST00000085754 ENSMUSP00000082906 TRANSLATION protein_coding - - 1 298.0 0.0 2.8 0.0 28.8 3.0 -4,-7 0.0529 3 12.0 MINOR ENSMUSG00000032313 Tmem266 ENSMUST00000130465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057933 Gsta2 ENSMUST00000140498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057933 Gsta2 ENSMUST00000129247 ENSMUSP00000117101 TRANSLATION protein_coding stop - 3 179.0 10.0 4.25 0.0 128.8 0.0 -4,-7 0.0028 - -2.0 MINOR ENSMUSG00000057933 Gsta2 ENSMUST00000125479 ENSMUSP00000115517 TRANSLATION protein_coding stop - 3 182.0 10.0 4.25 0.0 132.3 0.0 -4,-7 0.0026 - -2.0 MINOR ENSMUSG00000057933 Gsta2 ENSMUST00000034902 ENSMUSP00000034902 TRANSLATION protein_coding - CCDS23359.1 1 222.0 10.0 5.25 19.0 143.9 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000035941 Ibtk ENSMUST00000187521 ENSMUSP00000139424 TRANSLATION nonsense_mediated_decay - - 1 495.0 0.0 4.24 0.0 158.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000035941 Ibtk ENSMUST00000186447 - NO_TRANSLATION retained_intron ENSMUSG00000035941 Ibtk ENSMUST00000186322 - NO_TRANSLATION retained_intron ENSMUSG00000035941 Ibtk ENSMUST00000185353 - NO_TRANSLATION retained_intron ENSMUSG00000035941 Ibtk ENSMUST00000188768 - NO_TRANSLATION retained_intron ENSMUSG00000035941 Ibtk ENSMUST00000039213 ENSMUSP00000041145 TRANSLATION protein_coding - CCDS40712.1 1 1352.0 0.0 7.891 8.5 271.5 0.0 -4,-5 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000032403 2300009A05Rik ENSMUST00000168665 ENSMUSP00000127596 TRANSLATION protein_coding - CCDS52830.1 1 157.0 0.0 2.0 23.2 208.0 0.0 -3,1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000032403 2300009A05Rik ENSMUST00000186165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032403 2300009A05Rik ENSMUST00000187234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032403 2300009A05Rik ENSMUST00000185528 - NO_TRANSLATION retained_intron ENSMUSG00000032257 Ankk1 ENSMUST00000216227 ENSMUSP00000149708 TRANSLATION protein_coding start - 2 94.0 0.0 0.58 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032257 Ankk1 ENSMUST00000034792 ENSMUSP00000034792 TRANSLATION protein_coding - CCDS40616.1 1 745.0 21.0 3.675 0.0 379.0 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000032020 Ubash3b ENSMUST00000132996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032020 Ubash3b ENSMUST00000124819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032020 Ubash3b ENSMUST00000044155 ENSMUSP00000043865 TRANSLATION protein_coding - CCDS23085.1 1 638.0 13.0 10.0 17.1 90.5 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000032020 Ubash3b ENSMUST00000151485 ENSMUSP00000116038 TRANSLATION protein_coding - - 1 516.0 12.0 8.2 4.6 61.5 0.0 -4,-5 0.0603 10 12.71 MINOR ENSMUSG00000032020 Ubash3b ENSMUST00000136530 ENSMUSP00000114176 TRANSLATION protein_coding stop - 3 116.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000032020 Ubash3b ENSMUST00000129906 ENSMUSP00000134923 TRANSLATION protein_coding stop - 3 93.0 0.0 0.5 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000043911 Or8b55 ENSMUST00000213164 ENSMUSP00000149057 TRANSLATION protein_coding - CCDS23027.1 5 311.0 0.0 1.0 11.4 174.6 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043911 Or8b55 ENSMUST00000051004 ENSMUSP00000057086 TRANSLATION protein_coding - CCDS23027.1 - 311.0 0.0 1.0 11.4 174.6 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032259 Drd2 ENSMUST00000075764 ENSMUSP00000075170 TRANSLATION protein_coding - CCDS40615.1 1 444.0 0.0 5.25 15.3 292.4 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000046480 Scn4b ENSMUST00000060125 ENSMUSP00000062507 TRANSLATION protein_coding - CCDS23130.1 1 228.0 0.0 3.5 9.7 43.5 0.0 -1,-4 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000032411 Tfdp2 ENSMUST00000189606 ENSMUSP00000141084 TRANSLATION protein_coding stop - 5 369.0 0.0 5.65 0.0 302.9 0.0 -4,-7 0.0512 2 -2.0 MINOR ENSMUSG00000032411 Tfdp2 ENSMUST00000190709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032411 Tfdp2 ENSMUST00000186609 ENSMUSP00000139891 TRANSLATION protein_coding stop - 5 203.0 0.0 4.65 0.0 253.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032411 Tfdp2 ENSMUST00000188008 ENSMUSP00000139848 TRANSLATION protein_coding stop - 5 368.0 0.0 5.65 0.0 302.9 0.0 -4,-7 0.0512 2 -2.0 MINOR ENSMUSG00000032411 Tfdp2 ENSMUST00000188750 ENSMUSP00000139926 TRANSLATION protein_coding - - 5 446.0 0.0 5.65 4.3 300.6 0.0 -4,-6 0.5104 5 9.356 MINOR ENSMUSG00000032411 Tfdp2 ENSMUST00000191390 - NO_TRANSLATION retained_intron ENSMUSG00000032411 Tfdp2 ENSMUST00000191133 ENSMUSP00000139395 TRANSLATION protein_coding start - 2 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032411 Tfdp2 ENSMUST00000190689 - NO_TRANSLATION retained_intron ENSMUSG00000032411 Tfdp2 ENSMUST00000165768 ENSMUSP00000128260 TRANSLATION protein_coding - CCDS57690.1 1 386.0 0.0 5.65 8.3 302.9 0.0 -4,-6 1.0 2 11.0 PRINCIPAL:4 ENSMUSG00000032411 Tfdp2 ENSMUST00000179065 ENSMUSP00000136817 TRANSLATION protein_coding - CCDS52892.1 1 359.0 0.0 5.65 0.3 300.6 0.0 -4,-5 0.23 2 8.0 MINOR ENSMUSG00000032411 Tfdp2 ENSMUST00000179416 ENSMUSP00000137176 TRANSLATION protein_coding - CCDS23413.1 1 385.0 0.0 5.65 8.3 300.6 0.0 -4,-6 0.9924 2 11.0 ALTERNATIVE:1 ENSMUSG00000032411 Tfdp2 ENSMUST00000034982 ENSMUSP00000034982 TRANSLATION protein_coding - CCDS23413.1 1 385.0 0.0 5.65 8.3 300.6 0.0 -4,-6 0.9924 2 11.0 ALTERNATIVE:1 ENSMUSG00000032411 Tfdp2 ENSMUST00000165120 ENSMUSP00000132934 TRANSLATION protein_coding - CCDS52893.1 1 310.0 0.0 5.25 1.0 286.8 0.0 -4,-5 0.0568 2 7.202 MINOR ENSMUSG00000032411 Tfdp2 ENSMUST00000185644 ENSMUSP00000140061 TRANSLATION protein_coding - CCDS23413.1 1 385.0 0.0 5.65 8.3 300.6 0.0 -4,-6 0.9924 2 11.0 ALTERNATIVE:1 ENSMUSG00000032411 Tfdp2 ENSMUST00000190104 ENSMUSP00000140797 TRANSLATION protein_coding stop - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032411 Tfdp2 ENSMUST00000188829 ENSMUSP00000140359 TRANSLATION protein_coding stop - 3 112.0 0.0 1.4 0.0 33.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032261 Sh3bgrl2 ENSMUST00000188030 ENSMUSP00000140348 TRANSLATION protein_coding - - 1 93.0 0.0 1.5 0.1 121.9 0.0 -4,-7 0.0 2 7.734 MINOR ENSMUSG00000032261 Sh3bgrl2 ENSMUST00000185664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032261 Sh3bgrl2 ENSMUST00000188241 ENSMUSP00000140951 TRANSLATION protein_coding - - 1 120.0 0.0 2.25 0.0 159.7 0.0 -4,-7 0.0159 3 12.0 MINOR ENSMUSG00000032261 Sh3bgrl2 ENSMUST00000188617 - NO_TRANSLATION retained_intron ENSMUSG00000032261 Sh3bgrl2 ENSMUST00000113215 ENSMUSP00000108841 TRANSLATION protein_coding - CCDS40708.1 1 107.0 0.0 2.25 14.5 159.7 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000032358 Fam83b ENSMUST00000098546 ENSMUSP00000096146 TRANSLATION protein_coding - CCDS40695.1 1 1012.0 0.0 2.4 4.3 354.2 0.0 -4,-5 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000032358 Fam83b ENSMUST00000183437 ENSMUSP00000139354 TRANSLATION protein_coding - CCDS40695.1 1 1012.0 0.0 2.4 4.3 354.2 0.0 -4,-5 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000041506 Rrp9 ENSMUST00000156796 - NO_TRANSLATION retained_intron ENSMUSG00000041506 Rrp9 ENSMUST00000217303 - NO_TRANSLATION retained_intron ENSMUSG00000041506 Rrp9 ENSMUST00000047721 ENSMUSP00000038580 TRANSLATION protein_coding - CCDS23481.1 1 475.0 0.0 11.43 12.3 88.0 0.0 -4,-7 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000041506 Rrp9 ENSMUST00000127400 - NO_TRANSLATION retained_intron ENSMUSG00000041506 Rrp9 ENSMUST00000185336 ENSMUSP00000140949 TRANSLATION nonsense_mediated_decay start - 3 67.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000041506 Rrp9 ENSMUST00000131618 - NO_TRANSLATION retained_intron ENSMUSG00000041506 Rrp9 ENSMUST00000123464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041506 Rrp9 ENSMUST00000125630 - NO_TRANSLATION retained_intron ENSMUSG00000001014 Icam4 ENSMUST00000215077 ENSMUSP00000151013 TRANSLATION protein_coding - - 1 262.0 0.0 0.9 0.0 53.3 0.0 -2,-3 0.6378 - 8.0 ALTERNATIVE:2 ENSMUSG00000001014 Icam4 ENSMUST00000001040 ENSMUSP00000001040 TRANSLATION protein_coding - CCDS22890.1 1 262.0 0.0 0.9 0.1 53.3 0.0 -2,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000032065 Tex12 ENSMUST00000217236 ENSMUSP00000149921 TRANSLATION protein_coding - CCDS40621.1 1 123.0 0.0 1.9 11.1 169.2 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000032065 Tex12 ENSMUST00000034568 ENSMUSP00000034568 TRANSLATION protein_coding - CCDS40621.1 1 123.0 0.0 1.9 11.1 169.2 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000036411 Matcap2 ENSMUST00000213133 - NO_TRANSLATION retained_intron ENSMUSG00000036411 Matcap2 ENSMUST00000213598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036411 Matcap2 ENSMUST00000214436 ENSMUSP00000149413 TRANSLATION protein_coding stop - 5 203.0 1.0 2.8 0.0 0.0 0.0 -4,-6 0.0044 - -2.0 MINOR ENSMUSG00000036411 Matcap2 ENSMUST00000058868 ENSMUSP00000062120 TRANSLATION protein_coding - CCDS40563.1 1 519.0 3.0 5.8 12.5 0.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091248 Pate8 ENSMUST00000170030 ENSMUSP00000126891 TRANSLATION protein_coding - CCDS52767.1 1 109.0 0.0 2.0 0.0 0.0 0.0 -2,-4 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000056617 4931429L15Rik ENSMUST00000160795 ENSMUSP00000123966 TRANSLATION protein_coding stop - 5 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0278 - -2.0 MINOR ENSMUSG00000056617 4931429L15Rik ENSMUST00000172280 ENSMUSP00000128017 TRANSLATION protein_coding - CCDS52785.1 5 379.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.8736 1 0.0 PRINCIPAL:1 ENSMUSG00000056617 4931429L15Rik ENSMUST00000159565 ENSMUSP00000124991 TRANSLATION protein_coding - CCDS52785.1 2 379.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.8736 1 0.0 PRINCIPAL:1 ENSMUSG00000032523 Hhatl ENSMUST00000215477 ENSMUSP00000150866 TRANSLATION protein_coding stop - 5 64.0 0.0 2.33 0.0 0.0 2.0 -2,-4 0.0005 2 -2.0 MINOR ENSMUSG00000032523 Hhatl ENSMUST00000163981 ENSMUSP00000131971 TRANSLATION protein_coding - CCDS23638.1 1 503.0 0.0 10.83 19.2 48.2 9.0 -2,-3 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000032523 Hhatl ENSMUST00000215910 ENSMUSP00000149350 TRANSLATION protein_coding stop - 5 64.0 0.0 2.33 0.0 0.0 2.0 -2,-4 0.0005 2 -2.0 MINOR ENSMUSG00000032523 Hhatl ENSMUST00000035110 ENSMUSP00000035110 TRANSLATION protein_coding - CCDS23638.1 1 503.0 0.0 10.83 19.2 48.2 9.0 -2,-3 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000032523 Hhatl ENSMUST00000217652 ENSMUSP00000150721 TRANSLATION protein_coding stop - 3 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032523 Hhatl ENSMUST00000214768 ENSMUSP00000149486 TRANSLATION protein_coding stop - 3 157.0 0.0 4.33 0.0 0.0 6.0 -2,-3 0.0038 3 -2.0 MINOR ENSMUSG00000040936 Ulk4 ENSMUST00000051565 ENSMUSP00000054833 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040936 Ulk4 ENSMUST00000171923 ENSMUSP00000131342 TRANSLATION protein_coding - CCDS52967.1 5 1275.0 0.0 7.0 9.1 166.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040936 Ulk4 ENSMUST00000051479 ENSMUSP00000057960 TRANSLATION protein_coding - - 1 1188.0 0.0 7.0 0.0 166.6 0.0 -4,-5 0.2012 - 12.0 MINOR ENSMUSG00000040936 Ulk4 ENSMUST00000171061 ENSMUSP00000129214 TRANSLATION nonsense_mediated_decay - - 5 910.0 0.0 7.0 0.0 166.6 0.0 -4,-5 0.0854 - -2.0 MINOR ENSMUSG00000040936 Ulk4 ENSMUST00000164969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040936 Ulk4 ENSMUST00000164336 - NO_TRANSLATION retained_intron ENSMUSG00000040936 Ulk4 ENSMUST00000170406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040936 Ulk4 ENSMUST00000169176 - NO_TRANSLATION retained_intron ENSMUSG00000040936 Ulk4 ENSMUST00000170237 ENSMUSP00000131488 TRANSLATION nonsense_mediated_decay - - 1 139.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040936 Ulk4 ENSMUST00000213408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032299 Commd4 ENSMUST00000215500 - NO_TRANSLATION retained_intron ENSMUSG00000032299 Commd4 ENSMUST00000213580 ENSMUSP00000150129 TRANSLATION nonsense_mediated_decay start - 3 96.0 0.0 2.45 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032299 Commd4 ENSMUST00000065358 ENSMUSP00000069078 TRANSLATION protein_coding - CCDS40647.1 1 199.0 0.0 5.78 21.9 57.4 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000032299 Commd4 ENSMUST00000214640 ENSMUSP00000151102 TRANSLATION protein_coding start - 3 180.0 0.0 5.48 2.4 57.4 0.0 -4,-7 0.142 3 -2.0 MINOR ENSMUSG00000032299 Commd4 ENSMUST00000214212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032299 Commd4 ENSMUST00000213161 - NO_TRANSLATION retained_intron ENSMUSG00000032299 Commd4 ENSMUST00000216031 - NO_TRANSLATION retained_intron ENSMUSG00000032299 Commd4 ENSMUST00000214097 ENSMUSP00000149534 TRANSLATION protein_coding start/stop - 3 82.0 0.0 2.28 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032299 Commd4 ENSMUST00000214072 - NO_TRANSLATION retained_intron ENSMUSG00000032299 Commd4 ENSMUST00000214174 ENSMUSP00000150460 TRANSLATION nonsense_mediated_decay start - 2 54.0 0.0 0.54356 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032299 Commd4 ENSMUST00000215013 ENSMUSP00000149657 TRANSLATION protein_coding start/stop - 3 164.0 0.0 3.12 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032299 Commd4 ENSMUST00000217018 ENSMUSP00000149502 TRANSLATION protein_coding start/stop - 3 129.0 0.0 3.53 0.0 31.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032299 Commd4 ENSMUST00000214325 - NO_TRANSLATION retained_intron ENSMUSG00000098590 Vsig10l2 ENSMUST00000183573 ENSMUSP00000146390 TRANSLATION protein_coding - - 5 776.0 0.0 2.315 0.0 75.4 0.0 3,-1 0.8704 - 12.0 PRINCIPAL:1 ENSMUSG00000048752 Prss50 ENSMUST00000196027 ENSMUSP00000143092 TRANSLATION protein_coding start - 3 221.0 2.0 1.75 0.0 80.0 0.0 1,-2 0.0027 1 -2.0 MINOR ENSMUSG00000048752 Prss50 ENSMUST00000051097 ENSMUSP00000059668 TRANSLATION protein_coding - CCDS23577.1 1 439.0 2.0 4.75 0.0 165.6 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000062275 Fbxw24 ENSMUST00000073962 ENSMUSP00000073617 TRANSLATION protein_coding - CCDS40774.1 1 466.0 0.0 1.885 0.1 39.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000090470 Prr23a3 ENSMUST00000167951 ENSMUSP00000130716 TRANSLATION protein_coding - CCDS52896.1 - 254.0 0.0 0.2 0.0 308.4 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032105 Nherf4 ENSMUST00000213186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032105 Nherf4 ENSMUST00000034618 ENSMUSP00000034618 TRANSLATION protein_coding - CCDS23099.1 1 498.0 0.0 5.8 4.8 140.1 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000034563 Ccpg1 ENSMUST00000156879 ENSMUSP00000117202 TRANSLATION protein_coding stop - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 - -2.0 MINOR ENSMUSG00000034563 Ccpg1 ENSMUST00000183672 - NO_TRANSLATION retained_intron ENSMUSG00000034563 Ccpg1 ENSMUST00000138466 - NO_TRANSLATION retained_intron ENSMUSG00000034563 Ccpg1 ENSMUST00000085350 ENSMUSP00000082458 TRANSLATION protein_coding - CCDS72278.1 1 803.0 0.0 0.0 1.3 0.0 1.0 -4,-5 0.9829 6 1.0 PRINCIPAL:2 ENSMUSG00000034563 Ccpg1 ENSMUST00000037977 ENSMUSP00000045669 TRANSLATION protein_coding - CCDS23334.1 1 638.0 0.0 0.0 0.1 0.0 1.0 -4,-5 0.2709 4 0.0 ALTERNATIVE:2 ENSMUSG00000034563 Ccpg1 ENSMUST00000124008 ENSMUSP00000121059 TRANSLATION nonsense_mediated_decay - - 1 153.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0216 - -2.0 MINOR ENSMUSG00000034563 Ccpg1 ENSMUST00000149551 - NO_TRANSLATION retained_intron ENSMUSG00000034563 Ccpg1 ENSMUST00000140675 ENSMUSP00000116976 TRANSLATION protein_coding - CCDS72277.1 1 778.0 0.0 0.0 0.1 0.0 1.0 -4,-5 0.4526 6 0.0 ALTERNATIVE:2 ENSMUSG00000034563 Ccpg1 ENSMUST00000150826 ENSMUSP00000122966 TRANSLATION protein_coding - CCDS52855.1 1 753.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.3297 5 0.0 ALTERNATIVE:2 ENSMUSG00000034563 Ccpg1 ENSMUST00000131924 - NO_TRANSLATION retained_intron ENSMUSG00000032108 Pate6 ENSMUST00000034619 ENSMUSP00000034619 TRANSLATION protein_coding - CCDS40577.1 1 106.0 0.0 2.0 0.0 0.0 0.0 2,-3 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000044292 Or10g7 ENSMUST00000057161 ENSMUSP00000060106 TRANSLATION protein_coding - CCDS23069.1 - 311.0 0.0 1.0 10.7 187.3 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044292 Or10g7 ENSMUST00000217600 ENSMUSP00000151115 TRANSLATION protein_coding - CCDS23069.1 5 311.0 0.0 1.0 10.7 187.3 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000010660 Plcd1 ENSMUST00000010804 ENSMUSP00000010804 TRANSLATION protein_coding - CCDS23607.1 1 756.0 14.0 12.95 7.1 573.5 0.0 -4,-5 1.0 18 16.541 ALTERNATIVE:1 ENSMUSG00000010660 Plcd1 ENSMUST00000214491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010660 Plcd1 ENSMUST00000214470 ENSMUSP00000149813 TRANSLATION protein_coding - - 1 782.0 14.0 12.95 8.2 573.5 0.0 -4,0 0.9515 19 17.0 PRINCIPAL:3 ENSMUSG00000010660 Plcd1 ENSMUST00000213464 ENSMUSP00000149676 TRANSLATION nonsense_mediated_decay - - 1 503.0 7.0 7.2 0.0 362.1 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000016087 Fli1 ENSMUST00000016231 ENSMUSP00000016231 TRANSLATION protein_coding - CCDS40571.1 1 452.0 0.0 4.25 26.9 219.7 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000016087 Fli1 ENSMUST00000183767 ENSMUSP00000138984 TRANSLATION protein_coding stop - 5 209.0 0.0 2.75 0.0 98.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000053289 Ddx10 ENSMUST00000065630 ENSMUSP00000065198 TRANSLATION protein_coding - CCDS52796.1 1 875.0 14.0 10.65 3.6 316.2 0.0 -4,-6 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000062621 Or8b47 ENSMUST00000216496 ENSMUSP00000150446 TRANSLATION protein_coding - CCDS23015.1 5 311.0 0.0 1.0 11.4 157.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062621 Or8b47 ENSMUST00000074987 ENSMUSP00000074515 TRANSLATION protein_coding - CCDS23015.1 - 311.0 0.0 1.0 11.4 157.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066442 Mthfs ENSMUST00000127438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066442 Mthfs ENSMUST00000085256 ENSMUSP00000082354 TRANSLATION protein_coding - CCDS23394.1 1 203.0 8.0 3.75 10.5 205.9 0.0 -4,0 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000066442 Mthfs ENSMUST00000117314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066442 Mthfs ENSMUST00000209568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066442 Mthfs ENSMUST00000185894 ENSMUSP00000139738 TRANSLATION protein_coding start - 5 60.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066442 Mthfs ENSMUST00000118887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066442 Mthfs ENSMUST00000127868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066442 Mthfs ENSMUST00000187362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066442 Mthfs ENSMUST00000186009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066442 Mthfs ENSMUST00000149688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066442 Mthfs ENSMUST00000144930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066442 Mthfs ENSMUST00000147644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066442 Mthfs ENSMUST00000118870 ENSMUSP00000112695 TRANSLATION protein_coding - - 3 128.0 0.0 2.75 0.1 94.1 0.0 -4,0 0.0 2 4.002 MINOR ENSMUSG00000044229 Nxpe4 ENSMUST00000216998 ENSMUSP00000149644 TRANSLATION protein_coding - - 2 426.0 0.0 2.75 0.0 75.8 0.0 -1,-6 0.0147 7 10.002 MINOR ENSMUSG00000044229 Nxpe4 ENSMUST00000217002 - NO_TRANSLATION retained_intron ENSMUSG00000044229 Nxpe4 ENSMUST00000215780 ENSMUSP00000149741 TRANSLATION protein_coding - CCDS23152.1 1 543.0 0.0 3.75 3.9 75.0 0.0 -1,-6 1.0 9 12.934 PRINCIPAL:1 ENSMUSG00000044229 Nxpe4 ENSMUST00000093853 ENSMUSP00000091375 TRANSLATION protein_coding - CCDS23152.1 5 543.0 0.0 3.75 3.9 75.0 0.0 -1,-6 1.0 9 12.934 PRINCIPAL:1 ENSMUSG00000035200 Chrnb4 ENSMUST00000034854 ENSMUSP00000034854 TRANSLATION protein_coding - CCDS23200.1 1 495.0 0.0 4.5 2.1 518.8 0.0 2,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000049229 Or7g26 ENSMUST00000054106 ENSMUSP00000154398 TRANSLATION protein_coding start - - 309.0 0.0 1.0 6.3 183.9 5.0 -3,-7 1.0 - -2.0 MINOR ENSMUSG00000049229 Or7g26 ENSMUST00000220268 ENSMUSP00000153910 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 0.0 183.9 5.0 -4,-7 0.5437 - 12.0 PRINCIPAL:1 ENSMUSG00000025894 Aasdhppt ENSMUST00000212066 ENSMUSP00000148826 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000025894 Aasdhppt ENSMUST00000051589 ENSMUSP00000053971 TRANSLATION protein_coding - CCDS22794.1 1 309.0 11.0 4.905 11.0 64.6 0.0 -4,-2 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000025894 Aasdhppt ENSMUST00000212897 ENSMUSP00000148272 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000070304 Scn2b ENSMUST00000170998 ENSMUSP00000126826 TRANSLATION protein_coding - CCDS40606.1 1 215.0 0.0 3.0 18.9 75.6 0.0 1,-3 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000091080 Prr23a1 ENSMUST00000170349 ENSMUSP00000127711 TRANSLATION protein_coding - CCDS52894.1 - 258.0 0.0 0.2 0.1 312.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038145 Snrk ENSMUST00000118886 ENSMUSP00000114132 TRANSLATION protein_coding - CCDS23644.1 1 748.0 19.0 5.8 0.4 248.6 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000038145 Snrk ENSMUST00000119215 ENSMUSP00000113906 TRANSLATION protein_coding stop - 5 220.0 19.0 3.55 0.0 217.4 0.0 -4,-5 0.0006 4 -2.0 MINOR ENSMUSG00000038145 Snrk ENSMUST00000146832 ENSMUSP00000117994 TRANSLATION protein_coding stop - 3 54.0 8.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038145 Snrk ENSMUST00000131169 - NO_TRANSLATION retained_intron ENSMUSG00000038145 Snrk ENSMUST00000139181 ENSMUSP00000120582 TRANSLATION protein_coding stop - 2 90.0 9.0 2.0 0.0 58.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038145 Snrk ENSMUST00000145384 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038145 Snrk ENSMUST00000151872 - NO_TRANSLATION retained_intron ENSMUSG00000038145 Snrk ENSMUST00000120173 ENSMUSP00000112919 TRANSLATION protein_coding - CCDS23644.1 1 748.0 19.0 5.8 0.4 248.6 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000038145 Snrk ENSMUST00000217631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038145 Snrk ENSMUST00000142784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038145 Snrk ENSMUST00000215432 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038145 Snrk ENSMUST00000134949 ENSMUSP00000119878 TRANSLATION protein_coding stop - 1 411.0 19.0 5.8 0.0 248.6 0.0 -4,-5 0.0927 7 -2.0 MINOR ENSMUSG00000032512 Wdr48 ENSMUST00000214716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032512 Wdr48 ENSMUST00000217492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032512 Wdr48 ENSMUST00000215307 ENSMUSP00000149478 TRANSLATION protein_coding - - 1 662.0 0.0 12.185 0.0 257.9 0.0 -4,-2 0.0976 15 10.998 MINOR ENSMUSG00000032512 Wdr48 ENSMUST00000217555 - NO_TRANSLATION retained_intron ENSMUSG00000032512 Wdr48 ENSMUST00000217429 - NO_TRANSLATION retained_intron ENSMUSG00000032512 Wdr48 ENSMUST00000213230 - NO_TRANSLATION retained_intron ENSMUSG00000032512 Wdr48 ENSMUST00000216349 - NO_TRANSLATION retained_intron ENSMUSG00000032512 Wdr48 ENSMUST00000217472 ENSMUSP00000150321 TRANSLATION protein_coding - - 1 576.0 0.0 11.81 0.0 92.9 0.0 -4,-2 0.0197 14 4.248 MINOR ENSMUSG00000032512 Wdr48 ENSMUST00000215167 ENSMUSP00000149793 TRANSLATION protein_coding start - 5 205.0 0.0 3.65 0.0 39.9 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000032512 Wdr48 ENSMUST00000036561 ENSMUSP00000042509 TRANSLATION protein_coding - CCDS23618.1 1 676.0 0.0 12.685 27.8 257.9 0.0 -4,-2 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000032085 Tagln ENSMUST00000034590 ENSMUSP00000034590 TRANSLATION protein_coding - CCDS23137.1 1 201.0 0.0 4.33 36.9 112.2 0.0 -4,-6 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000032085 Tagln ENSMUST00000215509 ENSMUSP00000150408 TRANSLATION protein_coding stop - 3 109.0 0.0 2.0 0.0 43.9 0.0 -4,-6 0.0 12 -2.0 MINOR ENSMUSG00000032085 Tagln ENSMUST00000216035 - NO_TRANSLATION retained_intron ENSMUSG00000079084 Ccdc82 ENSMUST00000239561 ENSMUSP00000159444 TRANSLATION protein_coding - - - 249.0 0.0 4.75 0.0 110.5 0.0 -4,-7 0.0284 - 6.0 MINOR ENSMUSG00000079084 Ccdc82 ENSMUST00000217444 ENSMUSP00000150947 TRANSLATION protein_coding - CCDS57651.1 1 518.0 0.0 4.75 5.7 268.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079084 Ccdc82 ENSMUST00000215778 - NO_TRANSLATION retained_intron ENSMUSG00000079084 Ccdc82 ENSMUST00000169961 - NO_TRANSLATION retained_intron ENSMUSG00000079084 Ccdc82 ENSMUST00000216578 ENSMUSP00000151057 TRANSLATION protein_coding stop - - 161.0 0.0 0.0 0.0 67.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000079084 Ccdc82 ENSMUST00000215735 - NO_TRANSLATION retained_intron ENSMUSG00000079084 Ccdc82 ENSMUST00000110583 ENSMUSP00000106212 TRANSLATION protein_coding - CCDS57651.1 1 518.0 0.0 4.75 5.7 268.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032816 Igdcc4 ENSMUST00000035499 ENSMUSP00000045387 TRANSLATION protein_coding - CCDS72258.1 1 1253.0 0.0 7.745 3.6 374.9 1.0 3,-1 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000032816 Igdcc4 ENSMUST00000213423 - NO_TRANSLATION retained_intron ENSMUSG00000032816 Igdcc4 ENSMUST00000216542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032816 Igdcc4 ENSMUST00000214978 - NO_TRANSLATION retained_intron ENSMUSG00000032816 Igdcc4 ENSMUST00000213533 ENSMUSP00000150272 TRANSLATION protein_coding - - 1 1252.0 0.0 7.745 3.6 373.2 1.0 3,-1 0.6707 13 9.0 ALTERNATIVE:2 ENSMUSG00000037801 Iqch ENSMUST00000042322 ENSMUSP00000047953 TRANSLATION protein_coding - CCDS81021.1 1 1071.0 0.0 0.0 0.1 19.0 0.0 -4,-5 0.5956 - 2.0 ALTERNATIVE:2 ENSMUSG00000037801 Iqch ENSMUST00000080527 ENSMUSP00000079370 TRANSLATION protein_coding - - 1 837.0 0.0 0.0 0.0 19.0 0.0 -4,-5 0.125 - 2.0 ALTERNATIVE:2 ENSMUSG00000037801 Iqch ENSMUST00000171243 ENSMUSP00000131828 TRANSLATION protein_coding - - 5 1032.0 0.0 0.0 0.0 19.0 0.0 -4,-5 0.657 - 2.0 ALTERNATIVE:2 ENSMUSG00000037801 Iqch ENSMUST00000163624 ENSMUSP00000128482 TRANSLATION protein_coding - - 1 1030.0 0.0 0.0 0.0 19.0 0.0 -4,-5 0.8513 - 2.0 PRINCIPAL:4 ENSMUSG00000037801 Iqch ENSMUST00000163982 ENSMUSP00000126546 TRANSLATION protein_coding - CCDS52831.1 1 1042.0 0.0 0.0 0.0 19.0 0.0 -4,-5 0.7098 - 2.0 ALTERNATIVE:2 ENSMUSG00000037801 Iqch ENSMUST00000170960 - NO_TRANSLATION retained_intron ENSMUSG00000025785 Exosc7 ENSMUST00000159376 - NO_TRANSLATION retained_intron ENSMUSG00000025785 Exosc7 ENSMUST00000216412 - NO_TRANSLATION retained_intron ENSMUSG00000025785 Exosc7 ENSMUST00000026891 ENSMUSP00000026891 TRANSLATION protein_coding - CCDS40815.1 1 291.0 0.0 8.08 32.4 131.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025785 Exosc7 ENSMUST00000161569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025785 Exosc7 ENSMUST00000215590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025785 Exosc7 ENSMUST00000215377 ENSMUSP00000150152 TRANSLATION protein_coding start/stop - 5 144.0 0.0 3.33 0.0 51.8 0.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000025785 Exosc7 ENSMUST00000214741 - NO_TRANSLATION retained_intron ENSMUSG00000110266 Gm32742 ENSMUST00000210433 ENSMUSP00000148191 TRANSLATION protein_coding - - 5 1604.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.7258 - 0.0 PRINCIPAL:1 ENSMUSG00000032033 Barx2 ENSMUST00000116615 ENSMUSP00000112314 TRANSLATION protein_coding - CCDS52750.1 1 283.0 0.0 1.25 9.6 73.5 0.0 -4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000032398 Snapc5 ENSMUST00000034965 ENSMUSP00000034965 TRANSLATION protein_coding - CCDS23276.1 1 102.0 0.0 2.0 0.0 81.4 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000036768 Kif15 ENSMUST00000214311 ENSMUSP00000149313 TRANSLATION nonsense_mediated_decay start - 1 202.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036768 Kif15 ENSMUST00000217415 - NO_TRANSLATION retained_intron ENSMUSG00000036768 Kif15 ENSMUST00000214652 ENSMUSP00000150678 TRANSLATION protein_coding stop - 1 711.0 1.0 3.6 0.0 184.1 0.0 -4,-6 0.0006 13 -2.0 MINOR ENSMUSG00000036768 Kif15 ENSMUST00000216730 - NO_TRANSLATION retained_intron ENSMUSG00000036768 Kif15 ENSMUST00000216062 ENSMUSP00000149776 TRANSLATION protein_coding start - 3 188.0 0.0 0.0 0.0 41.8 0.0 -3,-5 0.0 1 -2.0 MINOR ENSMUSG00000036768 Kif15 ENSMUST00000214880 - NO_TRANSLATION retained_intron ENSMUSG00000036768 Kif15 ENSMUST00000216048 ENSMUSP00000149351 TRANSLATION nonsense_mediated_decay start - 5 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036768 Kif15 ENSMUST00000213945 - NO_TRANSLATION retained_intron ENSMUSG00000036768 Kif15 ENSMUST00000216388 ENSMUSP00000151160 TRANSLATION protein_coding stop - 3 137.0 1.0 3.0 0.0 184.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000036768 Kif15 ENSMUST00000214183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036768 Kif15 ENSMUST00000040717 ENSMUSP00000035490 TRANSLATION protein_coding - CCDS23651.1 1 1387.0 11.0 7.9 5.2 404.6 0.0 -4,-7 1.0 23 20.0 PRINCIPAL:1 ENSMUSG00000036768 Kif15 ENSMUST00000217612 - NO_TRANSLATION retained_intron ENSMUSG00000036768 Kif15 ENSMUST00000214921 - NO_TRANSLATION retained_intron ENSMUSG00000036768 Kif15 ENSMUST00000216491 - NO_TRANSLATION retained_intron ENSMUSG00000036768 Kif15 ENSMUST00000217401 ENSMUSP00000149737 TRANSLATION protein_coding stop - 3 120.0 3.0 -0.25 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000036768 Kif15 ENSMUST00000215176 - NO_TRANSLATION retained_intron ENSMUSG00000036768 Kif15 ENSMUST00000213745 ENSMUSP00000150932 TRANSLATION nonsense_mediated_decay - - 1 291.0 11.0 5.498 0.0 243.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000074476 Spc24 ENSMUST00000213665 - NO_TRANSLATION retained_intron ENSMUSG00000074476 Spc24 ENSMUST00000217382 ENSMUSP00000150475 TRANSLATION protein_coding - - 1 137.0 0.0 3.08 1.1 0.0 0.0 -2,-5 0.0105 2 1.875 MINOR ENSMUSG00000074476 Spc24 ENSMUST00000216057 ENSMUSP00000151082 TRANSLATION protein_coding - - 1 160.0 0.0 3.08 0.7 0.0 0.0 -2,-5 0.0072 2 1.842 MINOR ENSMUSG00000074476 Spc24 ENSMUST00000098942 ENSMUSP00000096541 TRANSLATION protein_coding - CCDS40554.1 1 201.0 0.0 5.16 9.7 62.0 0.0 -2,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000074476 Spc24 ENSMUST00000214149 ENSMUSP00000149956 TRANSLATION protein_coding stop - 3 42.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032314 Etfa ENSMUST00000034866 ENSMUSP00000034866 TRANSLATION protein_coding - CCDS23204.1 1 333.0 25.0 9.0 21.9 266.5 0.0 -3,1 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000032314 Etfa ENSMUST00000139342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032314 Etfa ENSMUST00000142587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032314 Etfa ENSMUST00000153186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054693 Adam10 ENSMUST00000145377 - NO_TRANSLATION retained_intron ENSMUSG00000054693 Adam10 ENSMUST00000144537 ENSMUSP00000116867 TRANSLATION protein_coding stop - 5 144.0 0.0 2.33 0.0 0.0 0.0 4,-1 0.0007 6 -2.0 MINOR ENSMUSG00000054693 Adam10 ENSMUST00000067880 ENSMUSP00000063839 TRANSLATION protein_coding - CCDS23323.1 1 749.0 11.0 9.99 8.1 219.7 0.0 3,-2 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000054693 Adam10 ENSMUST00000140205 ENSMUSP00000117162 TRANSLATION nonsense_mediated_decay - - 5 513.0 11.0 6.528 0.0 165.5 0.0 3,-2 0.0024 10 -2.0 MINOR ENSMUSG00000040875 Osbpl10 ENSMUST00000182920 ENSMUSP00000138266 TRANSLATION protein_coding stop - 3 37.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040875 Osbpl10 ENSMUST00000046627 ENSMUSP00000038013 TRANSLATION protein_coding - CCDS40796.1 1 591.0 0.0 2.26 1.0 264.0 0.0 -3,1 0.0633 7 5.274 MINOR ENSMUSG00000040875 Osbpl10 ENSMUST00000182363 ENSMUSP00000159129 TRANSLATION protein_coding - - 1 377.0 0.0 0.56 0.0 152.1 0.0 -4,-1 0.0 3 0.0 MINOR ENSMUSG00000040875 Osbpl10 ENSMUST00000183104 ENSMUSP00000138287 TRANSLATION protein_coding - - 5 766.0 0.0 4.36 1.1 306.1 0.0 -4,-7 0.8441 10 13.0 PRINCIPAL:1 ENSMUSG00000040875 Osbpl10 ENSMUST00000182413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040875 Osbpl10 ENSMUST00000182199 ENSMUSP00000138206 TRANSLATION nonsense_mediated_decay - - 1 67.0 0.0 1.166 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040875 Osbpl10 ENSMUST00000182384 ENSMUSP00000138552 TRANSLATION protein_coding - - 5 627.0 0.0 3.36 0.3 264.0 0.0 -4,-5 0.0152 7 7.476 MINOR ENSMUSG00000040875 Osbpl10 ENSMUST00000183141 ENSMUSP00000138760 TRANSLATION protein_coding stop - 3 172.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032502 Stac ENSMUST00000161995 ENSMUSP00000125182 TRANSLATION nonsense_mediated_decay - - 1 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032502 Stac ENSMUST00000162345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032502 Stac ENSMUST00000035083 ENSMUSP00000035083 TRANSLATION protein_coding - CCDS23586.1 1 403.0 8.0 4.67 8.7 213.2 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000032491 Nradd ENSMUST00000196876 ENSMUSP00000142925 TRANSLATION protein_coding stop - 3 59.0 0.0 0.5 0.0 0.0 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000032491 Nradd ENSMUST00000197894 - NO_TRANSLATION retained_intron ENSMUSG00000032491 Nradd ENSMUST00000035069 ENSMUSP00000035069 TRANSLATION protein_coding - CCDS23569.1 1 228.0 0.0 2.65 3.1 52.3 1.0 -4,-7 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000032491 Nradd ENSMUST00000196735 ENSMUSP00000143785 TRANSLATION protein_coding stop - 1 200.0 0.0 1.9 0.0 33.4 1.0 -4,-7 0.0009 4 -2.0 MINOR ENSMUSG00000070319 Eif3g ENSMUST00000213882 - NO_TRANSLATION retained_intron ENSMUSG00000070319 Eif3g ENSMUST00000216133 - NO_TRANSLATION retained_intron ENSMUSG00000070319 Eif3g ENSMUST00000213454 - NO_TRANSLATION retained_intron ENSMUSG00000070319 Eif3g ENSMUST00000004206 ENSMUSP00000004206 TRANSLATION protein_coding - CCDS40547.1 1 320.0 4.0 4.22 11.7 211.7 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000032548 Slco2a1 ENSMUST00000190892 - NO_TRANSLATION retained_intron ENSMUSG00000032548 Slco2a1 ENSMUST00000035148 ENSMUSP00000035148 TRANSLATION protein_coding - CCDS23448.1 1 643.0 0.0 0.0 8.5 622.6 12.0 -4,0 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000032548 Slco2a1 ENSMUST00000188664 ENSMUSP00000140533 TRANSLATION nonsense_mediated_decay - - 1 414.0 0.0 0.0 0.0 383.1 7.0 -4,0 0.0047 3 -2.0 MINOR ENSMUSG00000032548 Slco2a1 ENSMUST00000185215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038717 Atp5mg ENSMUST00000213999 - NO_TRANSLATION retained_intron ENSMUSG00000038717 Atp5mg ENSMUST00000216380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038717 Atp5mg ENSMUST00000216815 - NO_TRANSLATION retained_intron ENSMUSG00000038717 Atp5mg ENSMUST00000043675 ENSMUSP00000047960 TRANSLATION protein_coding - CCDS40604.1 1 103.0 0.0 2.2 18.5 95.8 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000118396 4930517N10Rik ENSMUST00000189866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118396 4930517N10Rik ENSMUST00000062917 ENSMUSP00000054276 TRANSLATION protein_coding - CCDS40758.1 1 203.0 0.0 1.575 0.0 20.2 0.0 -4,-5 0.6972 - 7.2 PRINCIPAL:1 ENSMUSG00000118396 4930517N10Rik ENSMUST00000215525 ENSMUSP00000158670 TRANSLATION protein_coding - - 2 171.0 0.0 1.0 0.0 34.1 0.0 -4,-7 0.0314 - 5.81 MINOR ENSMUSG00000094701 Or8b51 ENSMUST00000214093 ENSMUSP00000149578 TRANSLATION protein_coding - CCDS23020.1 3 310.0 0.0 1.0 11.4 154.4 3.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094701 Or8b51 ENSMUST00000213714 ENSMUSP00000149017 TRANSLATION protein_coding - CCDS23020.1 5 310.0 0.0 1.0 11.4 154.4 3.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094701 Or8b51 ENSMUST00000081196 ENSMUSP00000079959 TRANSLATION protein_coding - CCDS23020.1 - 310.0 0.0 1.0 11.4 154.4 3.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032193 Ldlr ENSMUST00000214549 - NO_TRANSLATION retained_intron ENSMUSG00000032193 Ldlr ENSMUST00000217613 - NO_TRANSLATION retained_intron ENSMUSG00000032193 Ldlr ENSMUST00000213114 ENSMUSP00000149431 TRANSLATION protein_coding - - 1 810.0 59.0 11.8 0.0 637.8 1.0 4,-1 0.119 18 13.692 MINOR ENSMUSG00000032193 Ldlr ENSMUST00000217111 - NO_TRANSLATION retained_intron ENSMUSG00000032193 Ldlr ENSMUST00000034713 ENSMUSP00000034713 TRANSLATION protein_coding - CCDS22910.1 1 862.0 59.0 12.8 1.0 676.3 1.0 4,-1 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000032193 Ldlr ENSMUST00000215917 - NO_TRANSLATION retained_intron ENSMUSG00000032193 Ldlr ENSMUST00000214359 - NO_TRANSLATION retained_intron ENSMUSG00000037129 Tmprss13 ENSMUST00000034597 ENSMUSP00000034597 TRANSLATION protein_coding - CCDS23132.1 1 548.0 10.0 8.5 0.0 304.8 0.0 -4,-1 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000096757 Or8c11 ENSMUST00000214865 ENSMUSP00000149583 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 11.5 166.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096757 Or8c11 ENSMUST00000072731 ENSMUSP00000072514 TRANSLATION protein_coding - CCDS57671.1 - 316.0 0.0 1.0 5.6 166.1 6.0 -4,-6 0.9994 - 13.314 MINOR ENSMUSG00000043087 Or7g35 ENSMUST00000061693 ENSMUSP00000054790 TRANSLATION protein_coding - CCDS85647.1 - 312.0 0.0 1.0 9.0 181.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043087 Or7g35 ENSMUST00000215587 ENSMUSP00000150218 TRANSLATION protein_coding - CCDS85647.1 5 312.0 0.0 1.0 9.0 181.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035769 Xylb ENSMUST00000215822 ENSMUSP00000150659 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 1.55 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000035769 Xylb ENSMUST00000039610 ENSMUSP00000047254 TRANSLATION protein_coding - CCDS23614.1 1 551.0 10.0 15.55 0.0 118.4 0.0 -4,-1 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000035769 Xylb ENSMUST00000213383 - NO_TRANSLATION retained_intron ENSMUSG00000035769 Xylb ENSMUST00000215305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035769 Xylb ENSMUST00000216838 ENSMUSP00000151179 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 1.55 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000032305 Fam219b ENSMUST00000114200 ENSMUSP00000109838 TRANSLATION protein_coding - CCDS52807.1 1 197.0 0.0 0.75 6.9 199.2 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000032305 Fam219b ENSMUST00000093833 ENSMUSP00000091353 TRANSLATION protein_coding - CCDS52808.1 1 128.0 0.0 0.75 1.1 65.9 0.0 -4,-5 0.1336 2 6.034 MINOR ENSMUSG00000032305 Fam219b ENSMUST00000215897 - NO_TRANSLATION retained_intron ENSMUSG00000032330 Cox7a2 ENSMUST00000215452 - NO_TRANSLATION retained_intron ENSMUSG00000032330 Cox7a2 ENSMUST00000215933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032330 Cox7a2 ENSMUST00000034881 ENSMUSP00000034881 TRANSLATION protein_coding - CCDS23366.1 1 83.0 0.0 1.85 33.8 45.3 0.0 -4,0 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000035032 Nek11 ENSMUST00000177029 ENSMUSP00000135837 TRANSLATION nonsense_mediated_decay - - 5 80.0 7.0 0.5 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000035032 Nek11 ENSMUST00000215670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035032 Nek11 ENSMUST00000038648 ENSMUSP00000038611 TRANSLATION protein_coding - CCDS23464.1 1 628.0 17.0 6.65 0.0 205.3 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000035032 Nek11 ENSMUST00000156256 ENSMUSP00000116761 TRANSLATION nonsense_mediated_decay - - 1 200.0 16.0 2.85 0.0 111.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000035032 Nek11 ENSMUST00000140851 ENSMUSP00000116864 TRANSLATION protein_coding stop - 1 361.0 17.0 5.65 0.0 205.3 0.0 -4,-2 0.0524 - -2.0 MINOR ENSMUSG00000032373 Car12 ENSMUST00000071889 ENSMUSP00000071786 TRANSLATION protein_coding - CCDS23306.1 1 354.0 3.0 6.344 7.4 306.8 2.0 1,-4 1.0 3 13.0 PRINCIPAL:4 ENSMUSG00000032373 Car12 ENSMUST00000085420 ENSMUSP00000082541 TRANSLATION protein_coding - CCDS81026.1 1 344.0 3.0 6.08 7.4 306.8 2.0 1,-4 0.9381 3 12.472 ALTERNATIVE:1 ENSMUSG00000032373 Car12 ENSMUST00000123195 - NO_TRANSLATION retained_intron ENSMUSG00000032373 Car12 ENSMUST00000152011 - NO_TRANSLATION retained_intron ENSMUSG00000032373 Car12 ENSMUST00000217394 - NO_TRANSLATION retained_intron ENSMUSG00000032373 Car12 ENSMUST00000134829 ENSMUSP00000118030 TRANSLATION protein_coding start/stop - 5 204.0 1.0 3.639 0.0 148.8 2.0 -4,-5 0.0015 1 -2.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000198425 ENSMUSP00000142659 TRANSLATION protein_coding - CCDS23560.1 5 1217.0 10.0 10.748 0.0 158.5 0.0 -4,-5 0.3673 39 18.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000197979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032480 Dhx30 ENSMUST00000198843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032480 Dhx30 ENSMUST00000196171 ENSMUSP00000143616 TRANSLATION protein_coding - - 5 1186.0 10.0 10.748 0.4 158.5 0.0 -4,-2 0.3442 39 18.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000199801 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032480 Dhx30 ENSMUST00000200066 ENSMUSP00000143371 TRANSLATION protein_coding - CCDS57706.1 1 1194.0 10.0 10.748 10.5 158.5 0.0 -4,-2 1.0 39 21.0 PRINCIPAL:1 ENSMUSG00000032480 Dhx30 ENSMUST00000111991 ENSMUSP00000107622 TRANSLATION protein_coding - CCDS57706.1 5 1194.0 10.0 10.748 10.5 158.5 0.0 -4,-2 1.0 39 21.0 PRINCIPAL:1 ENSMUSG00000032480 Dhx30 ENSMUST00000199693 ENSMUSP00000143272 TRANSLATION protein_coding start - 3 72.0 0.0 0.7 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000199835 ENSMUSP00000142636 TRANSLATION protein_coding stop - 3 175.0 0.0 3.33 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000165596 ENSMUSP00000129174 TRANSLATION protein_coding - CCDS23560.1 5 1217.0 10.0 10.748 0.0 158.5 0.0 -4,-5 0.3673 39 18.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000196914 - NO_TRANSLATION retained_intron ENSMUSG00000032480 Dhx30 ENSMUST00000197182 ENSMUSP00000142846 TRANSLATION protein_coding stop - 5 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0197 - -2.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000062368 ENSMUSP00000062622 TRANSLATION protein_coding - CCDS57705.1 1 1223.0 10.0 10.748 2.6 158.5 0.0 -4,0 0.5539 38 18.504 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000197785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032480 Dhx30 ENSMUST00000196788 - NO_TRANSLATION retained_intron ENSMUSG00000032480 Dhx30 ENSMUST00000200029 - NO_TRANSLATION retained_intron ENSMUSG00000032480 Dhx30 ENSMUST00000199529 ENSMUSP00000142489 TRANSLATION protein_coding - CCDS57706.1 5 1194.0 10.0 10.748 10.5 158.5 0.0 -4,-2 1.0 39 21.0 PRINCIPAL:1 ENSMUSG00000032480 Dhx30 ENSMUST00000197928 ENSMUSP00000142549 TRANSLATION protein_coding - CCDS57706.1 1 1194.0 10.0 10.748 10.5 158.5 0.0 -4,-2 1.0 39 21.0 PRINCIPAL:1 ENSMUSG00000032480 Dhx30 ENSMUST00000198026 - NO_TRANSLATION retained_intron ENSMUSG00000032480 Dhx30 ENSMUST00000198443 ENSMUSP00000142836 TRANSLATION nonsense_mediated_decay - - 3 73.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000196497 ENSMUSP00000143529 TRANSLATION protein_coding stop - 3 101.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000196182 - NO_TRANSLATION retained_intron ENSMUSG00000032480 Dhx30 ENSMUST00000196455 ENSMUSP00000143751 TRANSLATION protein_coding start/stop - 3 134.0 0.0 1.83 0.0 0.0 0.0 -3,0 0.0004 1 -2.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000200593 ENSMUSP00000143607 TRANSLATION protein_coding start/stop - 3 239.0 0.0 1.668 0.0 0.0 0.0 -4,-5 0.0001 4 -2.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000199332 ENSMUSP00000142952 TRANSLATION protein_coding start - 3 98.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032480 Dhx30 ENSMUST00000200476 ENSMUSP00000143700 TRANSLATION protein_coding stop - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000089929 Bcl2a1b ENSMUST00000068569 ENSMUSP00000065612 TRANSLATION protein_coding - CCDS23393.1 1 172.0 0.0 1.8 7.7 85.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000037493 Cib2 ENSMUST00000041901 ENSMUSP00000038527 TRANSLATION protein_coding - CCDS40642.1 1 187.0 12.0 4.33 34.6 39.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000032300 1700017B05Rik ENSMUST00000034846 ENSMUSP00000034846 TRANSLATION protein_coding - CCDS23219.1 1 1023.0 0.0 0.4 0.0 0.0 0.0 -4,-5 1.0 11 6.0 PRINCIPAL:2 ENSMUSG00000032300 1700017B05Rik ENSMUST00000215298 ENSMUSP00000150452 TRANSLATION protein_coding - - 1 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0176 3 0.0 MINOR ENSMUSG00000032300 1700017B05Rik ENSMUST00000214583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032300 1700017B05Rik ENSMUST00000213199 ENSMUSP00000150884 TRANSLATION protein_coding - - 2 908.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.1352 9 6.0 ALTERNATIVE:2 ENSMUSG00000032300 1700017B05Rik ENSMUST00000217657 ENSMUSP00000149643 TRANSLATION protein_coding stop - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0168 3 -2.0 MINOR ENSMUSG00000032300 1700017B05Rik ENSMUST00000215426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032612 Usp4 ENSMUST00000192750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032612 Usp4 ENSMUST00000193093 - NO_TRANSLATION retained_intron ENSMUSG00000032612 Usp4 ENSMUST00000195608 ENSMUSP00000141411 TRANSLATION protein_coding start - 3 190.0 2.0 2.216 0.0 38.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000032612 Usp4 ENSMUST00000194224 ENSMUSP00000141321 TRANSLATION nonsense_mediated_decay - - 1 734.0 2.0 11.816 0.0 342.4 0.0 -4,-5 0.0016 19 -2.0 MINOR ENSMUSG00000032612 Usp4 ENSMUST00000193288 ENSMUSP00000141612 TRANSLATION protein_coding start - 1 394.0 2.0 4.216 0.0 37.3 0.0 -4,-6 0.0005 11 -2.0 MINOR ENSMUSG00000032612 Usp4 ENSMUST00000194959 ENSMUSP00000141368 TRANSLATION protein_coding - CCDS81074.1 1 915.0 4.0 16.366 11.1 466.9 0.0 -4,-5 1.0 26 15.0 PRINCIPAL:4 ENSMUSG00000032612 Usp4 ENSMUST00000035237 ENSMUSP00000035237 TRANSLATION protein_coding - CCDS23523.1 1 962.0 4.0 16.366 9.6 466.9 0.0 -4,-5 0.8996 26 14.553 ALTERNATIVE:1 ENSMUSG00000032612 Usp4 ENSMUST00000194065 - NO_TRANSLATION retained_intron ENSMUSG00000032612 Usp4 ENSMUST00000194034 - NO_TRANSLATION retained_intron ENSMUSG00000032612 Usp4 ENSMUST00000194939 - NO_TRANSLATION retained_intron ENSMUSG00000121572 ENSMUSG00000121572 ENSMUST00000249243 ENSMUSP00000159623 TRANSLATION protein_coding - - - 50.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.5757 - 0.0 PRINCIPAL:1 ENSMUSG00000033543 Gtf2a2 ENSMUST00000140265 ENSMUSP00000121840 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 1.75 0.0 85.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033543 Gtf2a2 ENSMUST00000119413 ENSMUSP00000113697 TRANSLATION protein_coding - CCDS52851.1 1 109.0 0.0 2.995 30.9 169.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000033543 Gtf2a2 ENSMUST00000116552 ENSMUSP00000112251 TRANSLATION nonsense_mediated_decay - - 1 76.0 0.0 1.75 0.0 85.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033543 Gtf2a2 ENSMUST00000148889 - NO_TRANSLATION retained_intron ENSMUSG00000033543 Gtf2a2 ENSMUST00000119905 ENSMUSP00000113061 TRANSLATION protein_coding - CCDS72269.1 2 68.0 0.0 1.75 1.0 85.6 0.0 -4,-5 0.0092 1 4.452 MINOR ENSMUSG00000033543 Gtf2a2 ENSMUST00000122087 ENSMUSP00000113109 TRANSLATION protein_coding stop - 3 91.0 0.0 2.5 0.0 144.8 0.0 -4,-5 0.0019 1 -2.0 MINOR ENSMUSG00000033543 Gtf2a2 ENSMUST00000126120 - NO_TRANSLATION retained_intron ENSMUSG00000033543 Gtf2a2 ENSMUST00000141894 - NO_TRANSLATION retained_intron ENSMUSG00000033543 Gtf2a2 ENSMUST00000131078 - NO_TRANSLATION retained_intron ENSMUSG00000033543 Gtf2a2 ENSMUST00000140305 ENSMUSP00000116962 TRANSLATION protein_coding stop - 3 87.0 0.0 2.5 0.0 142.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033543 Gtf2a2 ENSMUST00000133881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033543 Gtf2a2 ENSMUST00000148239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033543 Gtf2a2 ENSMUST00000135593 - NO_TRANSLATION retained_intron ENSMUSG00000033543 Gtf2a2 ENSMUST00000145816 - NO_TRANSLATION retained_intron ENSMUSG00000033543 Gtf2a2 ENSMUST00000118198 ENSMUSP00000113501 TRANSLATION protein_coding - CCDS52851.1 1 109.0 0.0 2.995 30.9 169.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000059383 Gfral ENSMUST00000074880 ENSMUSP00000074421 TRANSLATION protein_coding - CCDS40694.1 1 393.0 0.0 2.15 3.3 85.9 0.0 -2,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000059383 Gfral ENSMUST00000184693 ENSMUSP00000139120 TRANSLATION nonsense_mediated_decay - - 1 238.0 0.0 1.15 0.0 43.7 0.0 -2,-4 0.0 - -2.0 MINOR ENSMUSG00000032393 Dpp8 ENSMUST00000214247 - NO_TRANSLATION retained_intron ENSMUSG00000032393 Dpp8 ENSMUST00000217434 ENSMUSP00000150334 TRANSLATION nonsense_mediated_decay - - 1 334.0 0.0 6.0 0.0 125.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032393 Dpp8 ENSMUST00000034960 ENSMUSP00000034960 TRANSLATION protein_coding - CCDS23285.1 1 892.0 5.0 18.58 1.1 539.3 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000032393 Dpp8 ENSMUST00000217328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032393 Dpp8 ENSMUST00000216309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032393 Dpp8 ENSMUST00000167773 ENSMUSP00000126065 TRANSLATION protein_coding - CCDS23285.1 1 892.0 5.0 18.58 1.1 539.3 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000032393 Dpp8 ENSMUST00000216010 - NO_TRANSLATION retained_intron ENSMUSG00000032393 Dpp8 ENSMUST00000214678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032221 Mns1 ENSMUST00000184604 ENSMUSP00000139232 TRANSLATION protein_coding stop - 3 206.0 0.0 0.0 0.0 37.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032221 Mns1 ENSMUST00000183809 ENSMUSP00000139105 TRANSLATION protein_coding stop - 3 219.0 0.0 0.0 0.0 78.5 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032221 Mns1 ENSMUST00000034746 ENSMUSP00000034746 TRANSLATION protein_coding - CCDS40684.1 1 491.0 0.0 0.0 9.5 265.6 0.0 -4,-6 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000032309 Fbxo22 ENSMUST00000140375 ENSMUSP00000117341 TRANSLATION nonsense_mediated_decay - - 5 166.0 0.0 0.0 0.0 25.4 0.0 -4,-6 0.02 4 -2.0 MINOR ENSMUSG00000032309 Fbxo22 ENSMUST00000153970 ENSMUSP00000122828 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032309 Fbxo22 ENSMUST00000146201 ENSMUSP00000117106 TRANSLATION protein_coding - - 1 299.0 0.0 0.0 2.8 0.0 0.0 -4,-5 0.2304 7 0.878 MINOR ENSMUSG00000032309 Fbxo22 ENSMUST00000034859 ENSMUSP00000034859 TRANSLATION protein_coding - CCDS23202.2 1 402.0 0.0 0.0 5.1 25.4 0.0 -4,-6 1.0 10 8.0 PRINCIPAL:1 ENSMUSG00000032309 Fbxo22 ENSMUST00000133795 ENSMUSP00000119304 TRANSLATION protein_coding stop - 5 108.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035606 Ky ENSMUST00000039390 ENSMUSP00000036032 TRANSLATION protein_coding - CCDS23445.1 1 661.0 0.0 2.3 8.4 56.0 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000035606 Ky ENSMUST00000190609 - NO_TRANSLATION retained_intron ENSMUSG00000032182 Yipf2 ENSMUST00000180365 ENSMUSP00000136463 TRANSLATION protein_coding - CCDS22907.1 1 312.0 0.0 5.15 6.5 70.0 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032182 Yipf2 ENSMUST00000078572 ENSMUSP00000077649 TRANSLATION protein_coding - CCDS22907.1 1 312.0 0.0 5.15 6.5 70.0 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032182 Yipf2 ENSMUST00000034700 ENSMUSP00000034700 TRANSLATION protein_coding - CCDS22907.1 1 312.0 0.0 5.15 6.5 70.0 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032182 Yipf2 ENSMUST00000213809 ENSMUSP00000149626 TRANSLATION protein_coding - - 1 122.0 0.0 1.55 0.0 0.0 3.0 -3,-5 0.0017 - 0.0 MINOR ENSMUSG00000002028 Kmt2a ENSMUST00000152241 ENSMUSP00000138767 TRANSLATION nonsense_mediated_decay start - 5 629.0 4.0 1.75 0.0 51.5 0.0 -4,-5 0.0014 5 -2.0 MINOR ENSMUSG00000002028 Kmt2a ENSMUST00000114689 ENSMUSP00000110337 TRANSLATION protein_coding - - 5 3966.0 37.0 13.7495 0.3 364.6 0.0 -4,-7 0.6196 27 13.6 ALTERNATIVE:2 ENSMUSG00000002028 Kmt2a ENSMUST00000002095 ENSMUSP00000002095 TRANSLATION protein_coding - CCDS40603.1 5 3963.0 37.0 13.7495 0.3 369.4 0.0 -4,-7 1.0 27 14.0 PRINCIPAL:2 ENSMUSG00000002028 Kmt2a ENSMUST00000128768 ENSMUSP00000122541 TRANSLATION protein_coding stop - 5 1438.0 4.0 2.23 0.0 51.5 0.0 -4,-7 0.0291 10 -2.0 MINOR ENSMUSG00000002028 Kmt2a ENSMUST00000215489 ENSMUSP00000149173 TRANSLATION protein_coding start/stop - 5 173.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002028 Kmt2a ENSMUST00000138119 ENSMUSP00000138138 TRANSLATION nonsense_mediated_decay start - 1 639.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.005 6 -2.0 MINOR ENSMUSG00000032508 Myd88 ENSMUST00000150837 - NO_TRANSLATION retained_intron ENSMUSG00000032508 Myd88 ENSMUST00000035092 ENSMUSP00000035092 TRANSLATION protein_coding - CCDS23612.1 1 296.0 0.0 5.15 7.6 105.6 0.0 -4,-2 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000032508 Myd88 ENSMUST00000139870 ENSMUSP00000115746 TRANSLATION protein_coding stop - 2 109.0 0.0 1.0 0.0 42.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032212 Sltm ENSMUST00000216816 ENSMUSP00000149059 TRANSLATION protein_coding - - 5 1013.0 0.0 1.1 1.1 78.7 0.0 -1,-2 0.3904 13 9.0 ALTERNATIVE:2 ENSMUSG00000032212 Sltm ENSMUST00000214834 - NO_TRANSLATION retained_intron ENSMUSG00000032212 Sltm ENSMUST00000217593 ENSMUSP00000150324 TRANSLATION nonsense_mediated_decay - - 1 664.0 0.0 1.1 0.0 78.7 0.0 -1,-2 0.1219 6 -2.0 MINOR ENSMUSG00000032212 Sltm ENSMUST00000049263 ENSMUSP00000049112 TRANSLATION protein_coding - CCDS23322.1 1 1031.0 0.0 1.1 1.1 78.7 0.0 -1,-2 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000032212 Sltm ENSMUST00000213362 - NO_TRANSLATION retained_intron ENSMUSG00000032212 Sltm ENSMUST00000216881 - NO_TRANSLATION retained_intron ENSMUSG00000032212 Sltm ENSMUST00000213808 ENSMUSP00000149511 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 0.0 0.0 40.2 0.0 -1,-3 0.0 - -2.0 MINOR ENSMUSG00000032212 Sltm ENSMUST00000215714 - NO_TRANSLATION retained_intron ENSMUSG00000001348 Acp5 ENSMUST00000213815 ENSMUSP00000149597 TRANSLATION protein_coding - CCDS22923.1 5 327.0 9.0 4.0 7.0 78.1 0.0 3,-2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000001348 Acp5 ENSMUST00000217643 ENSMUSP00000150903 TRANSLATION protein_coding - CCDS22923.1 5 327.0 9.0 4.0 7.0 78.1 0.0 3,-2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000001348 Acp5 ENSMUST00000069330 ENSMUSP00000065425 TRANSLATION protein_coding - CCDS22923.1 1 327.0 9.0 4.0 7.0 78.1 0.0 3,-2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000001348 Acp5 ENSMUST00000165735 ENSMUSP00000127128 TRANSLATION protein_coding - CCDS22923.1 1 327.0 9.0 4.0 7.0 78.1 0.0 3,-2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000001348 Acp5 ENSMUST00000216684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001348 Acp5 ENSMUST00000115315 ENSMUSP00000110970 TRANSLATION protein_coding - CCDS22923.1 2 327.0 9.0 4.0 7.0 78.1 0.0 3,-2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000074269 Rec114 ENSMUST00000187632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074269 Rec114 ENSMUST00000175792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074269 Rec114 ENSMUST00000186592 ENSMUSP00000139758 TRANSLATION protein_coding start - 5 119.0 0.0 1.0 0.0 152.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074269 Rec114 ENSMUST00000098674 ENSMUSP00000096271 TRANSLATION protein_coding - CCDS52814.1 1 259.0 0.0 2.83 4.9 339.2 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000074269 Rec114 ENSMUST00000186960 ENSMUSP00000139686 TRANSLATION protein_coding stop - 5 11.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032112 Trappc4 ENSMUST00000215731 - NO_TRANSLATION retained_intron ENSMUSG00000032112 Trappc4 ENSMUST00000217163 ENSMUSP00000150263 TRANSLATION protein_coding - - 1 194.0 0.0 4.66 0.0 181.0 0.0 -4,-5 0.0018 10 9.18 MINOR ENSMUSG00000032112 Trappc4 ENSMUST00000215072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032112 Trappc4 ENSMUST00000034623 ENSMUSP00000034623 TRANSLATION protein_coding - CCDS23109.1 1 219.0 0.0 5.41 31.6 203.0 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000032112 Trappc4 ENSMUST00000217084 ENSMUSP00000149324 TRANSLATION nonsense_mediated_decay - - 3 58.0 0.0 1.132 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032112 Trappc4 ENSMUST00000217224 - NO_TRANSLATION retained_intron ENSMUSG00000032112 Trappc4 ENSMUST00000213747 - NO_TRANSLATION retained_intron ENSMUSG00000059412 Fxyd2 ENSMUST00000214245 - NO_TRANSLATION retained_intron ENSMUSG00000059412 Fxyd2 ENSMUST00000213158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059412 Fxyd2 ENSMUST00000213282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059412 Fxyd2 ENSMUST00000214654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059412 Fxyd2 ENSMUST00000041005 ENSMUSP00000035429 TRANSLATION protein_coding - CCDS23134.1 1 64.0 0.0 2.41 9.2 83.3 2.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059412 Fxyd2 ENSMUST00000214257 ENSMUSP00000149343 TRANSLATION protein_coding stop - 5 19.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059412 Fxyd2 ENSMUST00000216289 ENSMUSP00000150658 TRANSLATION protein_coding - - 5 57.0 0.0 2.08 0.0 82.5 2.0 -4,-6 0.0147 - 11.118 MINOR ENSMUSG00000059412 Fxyd2 ENSMUST00000217549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059412 Fxyd2 ENSMUST00000213850 ENSMUSP00000150521 TRANSLATION protein_coding stop - 3 12.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059412 Fxyd2 ENSMUST00000214017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059412 Fxyd2 ENSMUST00000216840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059412 Fxyd2 ENSMUST00000214680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059412 Fxyd2 ENSMUST00000214466 ENSMUSP00000149140 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 1.61 0.0 63.5 2.0 -4,-5 0.0056 - -2.0 MINOR ENSMUSG00000025887 Casp12 ENSMUST00000149520 - NO_TRANSLATION retained_intron ENSMUSG00000025887 Casp12 ENSMUST00000027009 ENSMUSP00000027009 TRANSLATION protein_coding - CCDS22800.1 1 419.0 5.0 5.43 0.1 206.7 0.0 -4,-5 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000025887 Casp12 ENSMUST00000138308 - NO_TRANSLATION retained_intron ENSMUSG00000025887 Casp12 ENSMUST00000151332 ENSMUSP00000122201 TRANSLATION protein_coding - - 1 349.0 5.0 5.43 0.0 158.0 0.0 -4,-5 0.0286 4 14.078 MINOR ENSMUSG00000025887 Casp12 ENSMUST00000151788 ENSMUSP00000121565 TRANSLATION nonsense_mediated_decay - - 1 231.0 0.0 1.6 0.0 71.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000062868 Or7g18 ENSMUST00000078861 ENSMUSP00000077903 TRANSLATION protein_coding - CCDS22848.1 - 315.0 0.0 1.0 10.0 173.7 5.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000062868 Or7g18 ENSMUST00000212723 ENSMUSP00000148394 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 10.0 173.7 5.0 -4,-7 0.9038 - 11.0 ALTERNATIVE:1 ENSMUSG00000066687 Zbtb16 ENSMUST00000093852 ENSMUSP00000091374 TRANSLATION protein_coding - CCDS23158.1 1 673.0 35.0 4.45 14.5 199.4 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000066687 Zbtb16 ENSMUST00000216150 ENSMUSP00000150887 TRANSLATION protein_coding - CCDS23158.1 1 673.0 35.0 4.45 14.5 199.4 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000059475 Zfp426 ENSMUST00000163427 ENSMUSP00000131005 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.165 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059475 Zfp426 ENSMUST00000167457 ENSMUSP00000130945 TRANSLATION protein_coding - - 1 483.0 44.0 2.785 1.0 221.6 0.0 -4,-5 0.073 - 11.402 MINOR ENSMUSG00000059475 Zfp426 ENSMUST00000164250 ENSMUSP00000131467 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059475 Zfp426 ENSMUST00000163348 ENSMUSP00000126446 TRANSLATION protein_coding - CCDS80962.1 1 549.0 44.0 3.785 1.4 308.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:4 ENSMUSG00000059475 Zfp426 ENSMUST00000164825 ENSMUSP00000127914 TRANSLATION protein_coding stop - 3 157.0 0.0 2.335 0.0 86.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059475 Zfp426 ENSMUST00000169558 ENSMUSP00000127045 TRANSLATION protein_coding - - 1 564.0 44.0 3.785 0.0 308.4 0.0 -4,-5 0.1583 - 14.0 ALTERNATIVE:2 ENSMUSG00000059475 Zfp426 ENSMUST00000166005 ENSMUSP00000129727 TRANSLATION protein_coding - CCDS40544.1 5 550.0 44.0 3.785 0.4 308.4 0.0 -4,-5 0.7846 - 14.0 ALTERNATIVE:2 ENSMUSG00000059475 Zfp426 ENSMUST00000168095 ENSMUSP00000130309 TRANSLATION nonsense_mediated_decay - - 3 85.0 0.0 1.495 0.0 83.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059475 Zfp426 ENSMUST00000166465 - NO_TRANSLATION retained_intron ENSMUSG00000059475 Zfp426 ENSMUST00000169269 ENSMUSP00000128843 TRANSLATION protein_coding stop - 5 68.0 0.0 1.0 0.0 63.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059475 Zfp426 ENSMUST00000164799 ENSMUSP00000130120 TRANSLATION protein_coding stop - 5 93.0 0.0 1.33 0.0 86.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059475 Zfp426 ENSMUST00000115562 ENSMUSP00000111224 TRANSLATION protein_coding - CCDS40544.1 1 550.0 44.0 3.785 0.4 308.4 0.0 -4,-5 0.7846 - 14.0 ALTERNATIVE:2 ENSMUSG00000059475 Zfp426 ENSMUST00000080386 ENSMUSP00000079250 TRANSLATION protein_coding - CCDS40544.1 1 550.0 44.0 3.785 0.4 308.4 0.0 -4,-5 0.7846 - 14.0 ALTERNATIVE:2 ENSMUSG00000032077 Bud13 ENSMUST00000213338 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032077 Bud13 ENSMUST00000138498 - NO_TRANSLATION retained_intron ENSMUSG00000032077 Bud13 ENSMUST00000154247 - NO_TRANSLATION retained_intron ENSMUSG00000032077 Bud13 ENSMUST00000124887 ENSMUSP00000114276 TRANSLATION nonsense_mediated_decay start - 5 74.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000032077 Bud13 ENSMUST00000213932 ENSMUSP00000150076 TRANSLATION protein_coding start - 3 185.0 0.0 3.88 0.0 174.9 0.0 -4,-2 0.0788 4 -2.0 MINOR ENSMUSG00000032077 Bud13 ENSMUST00000074957 ENSMUSP00000074490 TRANSLATION protein_coding - CCDS23145.1 1 637.0 0.0 3.88 0.1 174.9 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000032579 Hemk1 ENSMUST00000118051 ENSMUSP00000112882 TRANSLATION protein_coding - - 3 121.0 3.0 2.464 0.0 0.0 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000032579 Hemk1 ENSMUST00000194260 - NO_TRANSLATION retained_intron ENSMUSG00000032579 Hemk1 ENSMUST00000128396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032579 Hemk1 ENSMUST00000128895 - NO_TRANSLATION retained_intron ENSMUSG00000032579 Hemk1 ENSMUST00000148165 - NO_TRANSLATION retained_intron ENSMUSG00000032579 Hemk1 ENSMUST00000035196 ENSMUSP00000035196 TRANSLATION protein_coding - CCDS23488.1 1 340.0 16.0 5.914 3.8 41.2 0.0 -1,1 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000032579 Hemk1 ENSMUST00000194735 - NO_TRANSLATION retained_intron ENSMUSG00000023473 Celsr3 ENSMUST00000213524 ENSMUSP00000150759 TRANSLATION protein_coding - - 1 3309.0 90.0 7.6475 0.4 1281.8 0.0 0,-4 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000023473 Celsr3 ENSMUST00000195857 - NO_TRANSLATION retained_intron ENSMUSG00000023473 Celsr3 ENSMUST00000192235 ENSMUSP00000141429 TRANSLATION protein_coding start/stop - 3 240.0 7.0 0.64 0.0 49.2 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000023473 Celsr3 ENSMUST00000194079 ENSMUSP00000141789 TRANSLATION protein_coding start/stop - 1 472.0 0.0 2.75 0.0 151.5 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000023473 Celsr3 ENSMUST00000195255 - NO_TRANSLATION retained_intron ENSMUSG00000023473 Celsr3 ENSMUST00000193726 - NO_TRANSLATION retained_intron ENSMUSG00000023473 Celsr3 ENSMUST00000024238 ENSMUSP00000024238 TRANSLATION protein_coding - - 1 3301.0 90.0 5.6475 0.1 1208.6 0.0 0,-4 0.4684 2 9.606 MINOR ENSMUSG00000095322 Or8g36 ENSMUST00000216177 ENSMUSP00000149559 TRANSLATION protein_coding - CCDS23049.1 3 311.0 0.0 1.0 11.4 170.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095322 Or8g36 ENSMUST00000051653 ENSMUSP00000054536 TRANSLATION protein_coding - CCDS23049.1 - 311.0 0.0 1.0 11.4 170.3 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032244 Fem1b ENSMUST00000034775 ENSMUSP00000034775 TRANSLATION protein_coding - CCDS23266.1 1 627.0 0.0 2.0 26.8 146.3 0.0 -3,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000096356 Or8b40 ENSMUST00000217286 ENSMUSP00000148913 TRANSLATION protein_coding - CCDS85655.1 5 309.0 0.0 1.0 8.7 169.2 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096356 Or8b40 ENSMUST00000072290 ENSMUSP00000072137 TRANSLATION protein_coding start - 5 314.0 0.0 1.0 4.3 169.2 5.0 -4,-7 0.6427 - -2.0 MINOR ENSMUSG00000007908 Hmgcll1 ENSMUST00000008052 ENSMUSP00000008052 TRANSLATION protein_coding - CCDS23349.1 1 343.0 5.0 7.5 15.6 222.4 0.0 -4,-6 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000007908 Hmgcll1 ENSMUST00000183979 ENSMUSP00000138914 TRANSLATION protein_coding - - 5 240.0 5.0 4.75 1.0 146.7 0.0 -4,-6 0.014 1 6.956 MINOR ENSMUSG00000007908 Hmgcll1 ENSMUST00000117981 ENSMUSP00000114045 TRANSLATION protein_coding - - 5 311.0 5.0 6.5 5.9 196.4 0.0 -4,-6 0.1897 3 14.786 MINOR ENSMUSG00000007908 Hmgcll1 ENSMUST00000183505 - NO_TRANSLATION retained_intron ENSMUSG00000007908 Hmgcll1 ENSMUST00000183425 ENSMUSP00000139094 TRANSLATION protein_coding - - 5 177.0 2.0 3.75 0.0 67.8 0.0 -4,-6 0.0 1 2.0 MINOR ENSMUSG00000007908 Hmgcll1 ENSMUST00000121592 - NO_TRANSLATION retained_intron ENSMUSG00000007908 Hmgcll1 ENSMUST00000126321 - NO_TRANSLATION retained_intron ENSMUSG00000046242 Nme9 ENSMUST00000163199 ENSMUSP00000150820 TRANSLATION protein_coding - - 5 329.0 10.0 5.94 1.3 165.2 0.0 -4,-5 0.7509 1 19.0 PRINCIPAL:1 ENSMUSG00000046242 Nme9 ENSMUST00000056103 - NO_TRANSLATION retained_intron ENSMUSG00000010651 Acaa1b ENSMUST00000127952 - NO_TRANSLATION retained_intron ENSMUSG00000010651 Acaa1b ENSMUST00000010795 ENSMUSP00000010795 TRANSLATION protein_coding - CCDS23608.1 1 424.0 17.0 9.55 20.0 463.4 0.0 -4,-1 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000032172 Olfm2 ENSMUST00000217198 ENSMUSP00000151018 TRANSLATION protein_coding - - 3 478.0 0.0 2.2 26.5 427.8 0.0 -2,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000032172 Olfm2 ENSMUST00000215039 - NO_TRANSLATION retained_intron ENSMUSG00000032172 Olfm2 ENSMUST00000215999 ENSMUSP00000149231 TRANSLATION protein_coding - - 3 456.0 0.0 2.2 0.4 427.8 0.0 3,-2 0.2214 8 12.0 MINOR ENSMUSG00000032172 Olfm2 ENSMUST00000034692 ENSMUSP00000034692 TRANSLATION protein_coding - CCDS40546.1 1 448.0 0.0 2.2 0.0 427.8 0.0 -4,-7 0.2479 8 12.0 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000123406 ENSMUSP00000114257 TRANSLATION protein_coding stop - 2 221.0 0.0 0.2 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000126818 - NO_TRANSLATION retained_intron ENSMUSG00000048537 Phldb1 ENSMUST00000123003 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048537 Phldb1 ENSMUST00000129806 - NO_TRANSLATION retained_intron ENSMUSG00000048537 Phldb1 ENSMUST00000134465 ENSMUSP00000117395 TRANSLATION protein_coding - - 5 1324.0 11.0 3.195 4.4 55.4 0.0 -4,-5 1.0 31 16.0 PRINCIPAL:4 ENSMUSG00000048537 Phldb1 ENSMUST00000128326 ENSMUSP00000119966 TRANSLATION protein_coding start - 5 832.0 11.0 1.575 0.0 55.4 0.0 -4,0 0.0666 18 -2.0 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000148929 ENSMUSP00000114533 TRANSLATION protein_coding stop - 2 164.0 0.0 0.2 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000135436 ENSMUSP00000120023 TRANSLATION protein_coding - - 1 495.0 11.0 1.575 0.0 55.4 0.0 -3,-5 0.0306 8 10.76 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000147495 ENSMUSP00000122661 TRANSLATION protein_coding - - 5 1382.0 11.0 2.865 4.4 51.8 0.0 -4,-5 0.6284 31 13.34 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000123123 ENSMUSP00000122071 TRANSLATION nonsense_mediated_decay start - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000156918 ENSMUSP00000120092 TRANSLATION protein_coding - - 5 641.0 11.0 1.575 0.0 55.4 0.0 -4,-5 0.0399 14 10.76 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000133312 - NO_TRANSLATION retained_intron ENSMUSG00000048537 Phldb1 ENSMUST00000123310 ENSMUSP00000122374 TRANSLATION protein_coding start/stop - 2 262.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 8 -2.0 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000144251 ENSMUSP00000114773 TRANSLATION protein_coding - - 1 684.0 11.0 1.575 0.0 55.4 0.0 -4,-5 0.0406 14 10.76 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000148344 ENSMUSP00000121809 TRANSLATION protein_coding start - 5 1131.0 11.0 1.575 0.0 55.4 0.0 -4,-7 0.1678 25 -2.0 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000034611 ENSMUSP00000034611 TRANSLATION protein_coding - CCDS23118.1 1 1371.0 11.0 3.195 3.4 55.4 0.0 -4,-5 0.9437 31 15.412 ALTERNATIVE:2 ENSMUSG00000048537 Phldb1 ENSMUST00000138356 ENSMUSP00000120208 TRANSLATION protein_coding - - 5 1449.0 11.0 2.865 0.0 51.8 0.0 -4,-5 0.0617 31 11.34 MINOR ENSMUSG00000048537 Phldb1 ENSMUST00000154723 ENSMUSP00000116987 TRANSLATION protein_coding start/stop - 5 309.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0025 9 -2.0 MINOR ENSMUSG00000001833 Septin7 ENSMUST00000213435 - NO_TRANSLATION retained_intron ENSMUSG00000001833 Septin7 ENSMUST00000214520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001833 Septin7 ENSMUST00000215692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001833 Septin7 ENSMUST00000165594 ENSMUSP00000127641 TRANSLATION protein_coding - CCDS40565.1 5 437.0 16.0 9.74 21.5 411.8 0.0 -4,-6 1.0 20 18.0 PRINCIPAL:3 ENSMUSG00000001833 Septin7 ENSMUST00000217598 - NO_TRANSLATION retained_intron ENSMUSG00000001833 Septin7 ENSMUST00000115272 ENSMUSP00000110927 TRANSLATION protein_coding - - 5 437.0 16.0 9.74 21.5 411.8 0.0 -4,-6 0.8761 19 18.0 ALTERNATIVE:1 ENSMUSG00000001833 Septin7 ENSMUST00000214911 - NO_TRANSLATION retained_intron ENSMUSG00000001833 Septin7 ENSMUST00000213980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001833 Septin7 ENSMUST00000214360 - NO_TRANSLATION retained_intron ENSMUSG00000001833 Septin7 ENSMUST00000215721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032078 Zpr1 ENSMUST00000141763 - NO_TRANSLATION retained_intron ENSMUSG00000032078 Zpr1 ENSMUST00000114552 ENSMUSP00000110199 TRANSLATION protein_coding start - 5 386.0 6.0 9.9 0.0 278.0 0.0 -4,-7 0.001 12 -2.0 MINOR ENSMUSG00000032078 Zpr1 ENSMUST00000125791 - NO_TRANSLATION retained_intron ENSMUSG00000032078 Zpr1 ENSMUST00000156440 ENSMUSP00000117725 TRANSLATION protein_coding - CCDS23144.1 1 459.0 8.0 10.9 6.7 376.9 0.0 -4,-2 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000032078 Zpr1 ENSMUST00000125239 ENSMUSP00000123437 TRANSLATION nonsense_mediated_decay start - 5 62.0 2.0 0.4 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032078 Zpr1 ENSMUST00000143511 - NO_TRANSLATION retained_intron ENSMUSG00000039048 Foxred1 ENSMUST00000142595 ENSMUSP00000117147 TRANSLATION protein_coding stop - 3 205.0 19.0 3.4 0.0 51.9 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000039048 Foxred1 ENSMUST00000139703 ENSMUSP00000122535 TRANSLATION nonsense_mediated_decay - - 3 186.0 19.0 3.466 0.0 51.9 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000039048 Foxred1 ENSMUST00000127996 ENSMUSP00000118037 TRANSLATION protein_coding - CCDS80974.1 1 487.0 40.0 10.08 8.2 177.6 0.0 -4,-2 1.0 12 14.868 PRINCIPAL:4 ENSMUSG00000039048 Foxred1 ENSMUST00000154691 ENSMUSP00000123496 TRANSLATION nonsense_mediated_decay - - 5 89.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000039048 Foxred1 ENSMUST00000151658 ENSMUSP00000120284 TRANSLATION nonsense_mediated_decay - - 1 140.0 9.0 1.6 0.0 31.6 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000039048 Foxred1 ENSMUST00000140177 - NO_TRANSLATION retained_intron ENSMUSG00000039048 Foxred1 ENSMUST00000138692 ENSMUSP00000120556 TRANSLATION nonsense_mediated_decay - - 3 89.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000039048 Foxred1 ENSMUST00000151082 - NO_TRANSLATION retained_intron ENSMUSG00000039048 Foxred1 ENSMUST00000143039 - NO_TRANSLATION retained_intron ENSMUSG00000039048 Foxred1 ENSMUST00000043805 ENSMUSP00000038924 TRANSLATION protein_coding - CCDS22958.1 1 493.0 40.0 10.146 8.2 175.1 0.0 -4,-2 0.9946 12 15.0 ALTERNATIVE:1 ENSMUSG00000039048 Foxred1 ENSMUST00000216618 - NO_TRANSLATION retained_intron ENSMUSG00000039048 Foxred1 ENSMUST00000135054 ENSMUSP00000115301 TRANSLATION protein_coding start - 3 141.0 8.0 3.0 0.0 31.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039048 Foxred1 ENSMUST00000130072 - NO_TRANSLATION retained_intron ENSMUSG00000032006 Pdgfd ENSMUST00000058692 ENSMUSP00000056240 TRANSLATION protein_coding - - 1 364.0 3.0 2.1 9.4 141.5 0.0 1,-2 0.7855 3 17.668 MINOR ENSMUSG00000032006 Pdgfd ENSMUST00000168039 ENSMUSP00000128388 TRANSLATION protein_coding - CCDS22801.1 1 370.0 3.0 2.1 13.6 141.5 0.0 1,-2 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000032006 Pdgfd ENSMUST00000214892 ENSMUSP00000149162 TRANSLATION protein_coding - - 1 261.0 3.0 2.1 0.7 79.5 0.0 1,-2 0.0946 1 11.28 MINOR ENSMUSG00000074452 Pate2 ENSMUST00000098906 ENSMUSP00000096505 TRANSLATION protein_coding - - 2 149.0 0.0 2.0 0.0 0.0 0.0 -2,-5 0.0044 - 4.8 MINOR ENSMUSG00000074452 Pate2 ENSMUST00000118254 ENSMUSP00000113239 TRANSLATION protein_coding - CCDS52756.1 1 111.0 0.0 2.5 2.9 0.0 0.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000074452 Pate2 ENSMUST00000217565 ENSMUSP00000149433 TRANSLATION protein_coding start - 5 108.0 0.0 2.5 0.1 0.0 0.0 -3,-7 0.1388 - -2.0 MINOR ENSMUSG00000074452 Pate2 ENSMUST00000173488 - NO_TRANSLATION retained_intron ENSMUSG00000074452 Pate2 ENSMUST00000137309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032407 U2surp ENSMUST00000185515 ENSMUSP00000140525 TRANSLATION protein_coding start/stop - 2 204.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 1 -2.0 MINOR ENSMUSG00000032407 U2surp ENSMUST00000191213 ENSMUSP00000140614 TRANSLATION nonsense_mediated_decay - - 5 425.0 0.0 1.37 0.0 56.5 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000032407 U2surp ENSMUST00000078374 ENSMUSP00000077482 TRANSLATION protein_coding - CCDS40727.1 1 985.0 0.0 2.8 0.4 160.5 0.0 -4,-6 0.4264 16 8.0 MINOR ENSMUSG00000032407 U2surp ENSMUST00000190019 ENSMUSP00000140331 TRANSLATION protein_coding start/stop - 3 77.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032407 U2surp ENSMUST00000079659 ENSMUSP00000078602 TRANSLATION protein_coding - CCDS52889.1 1 1029.0 0.0 2.8 9.6 160.5 0.0 -4,-7 1.0 16 11.0 PRINCIPAL:4 ENSMUSG00000032407 U2surp ENSMUST00000188017 - NO_TRANSLATION retained_intron ENSMUSG00000032407 U2surp ENSMUST00000186076 - NO_TRANSLATION retained_intron ENSMUSG00000032407 U2surp ENSMUST00000217176 ENSMUSP00000151121 TRANSLATION protein_coding - - 5 1028.0 0.0 2.616 9.6 160.5 0.0 -4,-7 0.8281 16 10.604 ALTERNATIVE:1 ENSMUSG00000032407 U2surp ENSMUST00000186139 - NO_TRANSLATION retained_intron ENSMUSG00000025892 Gria4 ENSMUST00000063508 ENSMUSP00000066980 TRANSLATION protein_coding - CCDS22797.1 1 902.0 10.0 13.3 31.2 570.6 3.0 2,-4 1.0 11 18.0 PRINCIPAL:4 ENSMUSG00000025892 Gria4 ENSMUST00000027020 ENSMUSP00000027020 TRANSLATION protein_coding - CCDS52715.1 5 902.0 10.0 13.3 31.2 568.4 3.0 2,-4 0.9922 11 18.0 ALTERNATIVE:1 ENSMUSG00000025892 Gria4 ENSMUST00000212533 ENSMUSP00000148533 TRANSLATION protein_coding - CCDS52715.1 1 902.0 10.0 13.3 31.2 568.4 3.0 2,-4 0.9922 11 18.0 ALTERNATIVE:1 ENSMUSG00000025892 Gria4 ENSMUST00000163309 ENSMUSP00000129316 TRANSLATION protein_coding - CCDS52716.1 1 433.0 0.0 7.8264 24.2 219.1 0.0 2,-4 0.5888 7 3.572 MINOR ENSMUSG00000093803 Ppp2r3d ENSMUST00000216394 ENSMUSP00000150071 TRANSLATION protein_coding start - 1 85.0 6.0 2.0 0.0 41.8 0.0 -4,-7 0.0015 1 -2.0 MINOR ENSMUSG00000093803 Ppp2r3d ENSMUST00000216876 - NO_TRANSLATION retained_intron ENSMUSG00000093803 Ppp2r3d ENSMUST00000239564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093803 Ppp2r3d ENSMUST00000187126 ENSMUSP00000139691 TRANSLATION protein_coding start - 5 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000093803 Ppp2r3d ENSMUST00000239563 ENSMUSP00000159447 TRANSLATION protein_coding - - - 519.0 10.0 6.21 0.0 64.3 0.0 -4,-7 0.7442 1 18.0 PRINCIPAL:1 ENSMUSG00000093803 Ppp2r3d ENSMUST00000189707 ENSMUSP00000140915 TRANSLATION protein_coding start/stop - 2 129.0 6.0 3.21 0.0 41.8 0.0 -4,-7 0.0015 1 -2.0 MINOR ENSMUSG00000093803 Ppp2r3d ENSMUST00000188509 ENSMUSP00000140113 TRANSLATION protein_coding stop - 1 115.0 0.0 0.48 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000093803 Ppp2r3d ENSMUST00000180233 ENSMUSP00000137530 TRANSLATION protein_coding start/stop - 2 141.0 4.0 3.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000093803 Ppp2r3d ENSMUST00000239565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093803 Ppp2r3d ENSMUST00000217354 ENSMUSP00000149673 TRANSLATION protein_coding start - - 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074061 Fbxw19 ENSMUST00000197191 - NO_TRANSLATION retained_intron ENSMUSG00000074061 Fbxw19 ENSMUST00000076617 ENSMUSP00000075918 TRANSLATION protein_coding - CCDS23552.1 1 466.0 0.0 1.27 0.0 39.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079235 Ccdc13 ENSMUST00000135986 ENSMUSP00000114787 TRANSLATION protein_coding - CCDS57717.1 5 709.0 0.0 0.0 3.6 0.0 0.0 -4,-5 1.0 4 1.0 PRINCIPAL:1 ENSMUSG00000079235 Ccdc13 ENSMUST00000146716 - NO_TRANSLATION retained_intron ENSMUSG00000079235 Ccdc13 ENSMUST00000142783 ENSMUSP00000130887 TRANSLATION protein_coding start - 2 254.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0409 1 -2.0 MINOR ENSMUSG00000079235 Ccdc13 ENSMUST00000140929 - NO_TRANSLATION retained_intron ENSMUSG00000079235 Ccdc13 ENSMUST00000126851 - NO_TRANSLATION retained_intron ENSMUSG00000079235 Ccdc13 ENSMUST00000155511 ENSMUSP00000128061 TRANSLATION nonsense_mediated_decay start - 1 101.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0117 1 -2.0 MINOR ENSMUSG00000032224 Fam81a ENSMUST00000141775 ENSMUSP00000114179 TRANSLATION protein_coding stop - 2 71.0 0.0 0.2 0.0 0.0 0.0 -4,-1 0.0176 1 -2.0 MINOR ENSMUSG00000032224 Fam81a ENSMUST00000034749 ENSMUSP00000034749 TRANSLATION protein_coding - CCDS40679.1 1 364.0 0.0 6.33 9.1 0.0 0.0 -4,-1 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000032224 Fam81a ENSMUST00000123206 ENSMUSP00000123535 TRANSLATION protein_coding stop - 3 81.0 0.0 0.2 0.0 0.0 0.0 -4,-1 0.0176 1 -2.0 MINOR ENSMUSG00000032224 Fam81a ENSMUST00000145427 - NO_TRANSLATION retained_intron ENSMUSG00000100838 Gm29094 ENSMUST00000138109 ENSMUSP00000119881 TRANSLATION protein_coding,RT start/stop - 4 221.0 0.0 2.0 0.0 147.3 0.0 -4,-6 0.7498 - -2.0 PRINCIPAL:1 ENSMUSG00000032475 Nck1 ENSMUST00000186591 ENSMUSP00000140971 TRANSLATION protein_coding stop - 2 206.0 0.0 3.0 0.0 99.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032475 Nck1 ENSMUST00000112874 ENSMUSP00000108495 TRANSLATION protein_coding - CCDS85715.1 1 313.0 0.0 3.6 12.0 185.5 0.0 -4,-5 0.4625 11 8.804 MINOR ENSMUSG00000032475 Nck1 ENSMUST00000116522 ENSMUSP00000112221 TRANSLATION protein_coding - CCDS23440.1 1 377.0 0.0 4.6 23.7 237.8 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000032475 Nck1 ENSMUST00000188670 ENSMUSP00000140143 TRANSLATION protein_coding stop - 3 132.0 0.0 2.0 0.0 52.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034792 Gna15 ENSMUST00000150586 - NO_TRANSLATION retained_intron ENSMUSG00000034792 Gna15 ENSMUST00000147908 - NO_TRANSLATION retained_intron ENSMUSG00000034792 Gna15 ENSMUST00000043709 ENSMUSP00000049175 TRANSLATION protein_coding - CCDS24060.1 1 374.0 23.0 5.864 7.2 371.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000107648 Or6c200-ps1 ENSMUST00000204763 ENSMUSP00000153893 TRANSLATION protein_coding - - 5 326.0 0.0 1.0 0.0 174.4 0.0 -4,-7 0.7936 - 12.0 PRINCIPAL:1 ENSMUSG00000034771 Tle2 ENSMUST00000124854 ENSMUSP00000118334 TRANSLATION protein_coding start/stop - 2 134.0 0.0 2.66 0.0 13.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034771 Tle2 ENSMUST00000136341 ENSMUSP00000121585 TRANSLATION protein_coding stop - 5 121.0 0.0 3.58 0.0 224.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000034771 Tle2 ENSMUST00000146916 ENSMUSP00000121173 TRANSLATION protein_coding stop - 2 736.0 0.0 9.54 0.0 285.4 0.0 -4,-7 0.2742 2 -2.0 MINOR ENSMUSG00000034771 Tle2 ENSMUST00000141913 - NO_TRANSLATION retained_intron ENSMUSG00000034771 Tle2 ENSMUST00000135211 ENSMUSP00000117453 TRANSLATION protein_coding - CCDS56737.1 1 732.0 0.0 9.96 0.0 263.8 0.0 -4,-7 0.8225 2 7.4 PRINCIPAL:2 ENSMUSG00000034771 Tle2 ENSMUST00000136254 - NO_TRANSLATION retained_intron ENSMUSG00000034771 Tle2 ENSMUST00000139135 - NO_TRANSLATION retained_intron ENSMUSG00000034771 Tle2 ENSMUST00000145878 - NO_TRANSLATION retained_intron ENSMUSG00000034771 Tle2 ENSMUST00000143285 ENSMUSP00000122074 TRANSLATION protein_coding stop - 5 153.0 0.0 2.83 0.0 144.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000034771 Tle2 ENSMUST00000151470 - NO_TRANSLATION retained_intron ENSMUSG00000034771 Tle2 ENSMUST00000131794 ENSMUSP00000120218 TRANSLATION protein_coding stop - 3 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034771 Tle2 ENSMUST00000129798 - NO_TRANSLATION retained_intron ENSMUSG00000034771 Tle2 ENSMUST00000131411 ENSMUSP00000114400 TRANSLATION protein_coding start - 5 119.0 0.0 3.08 0.0 13.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034771 Tle2 ENSMUST00000140433 - NO_TRANSLATION retained_intron ENSMUSG00000034771 Tle2 ENSMUST00000153812 - NO_TRANSLATION retained_intron ENSMUSG00000034771 Tle2 ENSMUST00000146358 ENSMUSP00000121125 TRANSLATION protein_coding - CCDS24063.1 1 767.0 0.0 9.54 0.1 267.6 0.0 -4,-7 0.2527 2 6.56 ALTERNATIVE:2 ENSMUSG00000020230 Prmt2 ENSMUST00000020452 ENSMUSP00000020452 TRANSLATION protein_coding - CCDS35942.1 1 445.0 23.0 8.26 0.4 70.6 0.0 -4,-5 0.0948 1 13.736 ALTERNATIVE:2 ENSMUSG00000020230 Prmt2 ENSMUST00000144670 - NO_TRANSLATION retained_intron ENSMUSG00000020230 Prmt2 ENSMUST00000137857 ENSMUSP00000137725 TRANSLATION nonsense_mediated_decay - - 2 254.0 23.0 4.029 0.0 70.6 0.0 -4,-5 0.0324 - -2.0 MINOR ENSMUSG00000020230 Prmt2 ENSMUST00000128048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020230 Prmt2 ENSMUST00000220116 - NO_TRANSLATION retained_intron ENSMUSG00000020230 Prmt2 ENSMUST00000217726 ENSMUSP00000151456 TRANSLATION nonsense_mediated_decay - - 3 127.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020230 Prmt2 ENSMUST00000099571 ENSMUSP00000097166 TRANSLATION protein_coding - CCDS35942.1 1 445.0 23.0 8.26 0.4 70.6 0.0 -4,-5 0.0948 1 13.736 ALTERNATIVE:2 ENSMUSG00000020230 Prmt2 ENSMUST00000099572 ENSMUSP00000097167 TRANSLATION protein_coding - CCDS78836.1 1 475.0 23.0 8.392 0.0 70.6 0.0 -4,-5 0.996 1 14.0 PRINCIPAL:2 ENSMUSG00000020230 Prmt2 ENSMUST00000128099 ENSMUSP00000137707 TRANSLATION nonsense_mediated_decay - - 1 254.0 23.0 4.029 0.0 70.6 0.0 -4,-5 0.0324 - -2.0 MINOR ENSMUSG00000019828 Grm1 ENSMUST00000135120 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019828 Grm1 ENSMUST00000105560 ENSMUSP00000101189 TRANSLATION protein_coding - CCDS48499.1 1 906.0 20.0 6.8 6.5 564.0 7.0 0,-3 0.724 17 14.69 MINOR ENSMUSG00000019828 Grm1 ENSMUST00000044306 ENSMUSP00000037255 TRANSLATION protein_coding - CCDS23696.1 1 1199.0 20.0 6.8 2.4 652.5 7.0 0,-3 1.0 22 18.51 PRINCIPAL:1 ENSMUSG00000019828 Grm1 ENSMUST00000155772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019828 Grm1 ENSMUST00000156826 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019828 Grm1 ENSMUST00000105561 ENSMUSP00000101190 TRANSLATION protein_coding - CCDS48499.1 1 906.0 20.0 6.8 6.5 564.0 7.0 0,-3 0.724 17 14.69 MINOR ENSMUSG00000005682 Pan2 ENSMUST00000218315 ENSMUSP00000151216 TRANSLATION protein_coding - - 1 1191.0 3.0 7.404 7.7 113.2 0.0 -4,-5 1.0 12 17.0 PRINCIPAL:1 ENSMUSG00000005682 Pan2 ENSMUST00000218137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005682 Pan2 ENSMUST00000218496 - NO_TRANSLATION retained_intron ENSMUSG00000005682 Pan2 ENSMUST00000219721 ENSMUSP00000151874 TRANSLATION protein_coding - - 1 1173.0 3.0 7.004 0.0 113.2 0.0 -4,-5 0.2276 11 14.202 MINOR ENSMUSG00000005682 Pan2 ENSMUST00000219801 - NO_TRANSLATION retained_intron ENSMUSG00000005682 Pan2 ENSMUST00000219255 - NO_TRANSLATION retained_intron ENSMUSG00000005682 Pan2 ENSMUST00000005825 ENSMUSP00000005825 TRANSLATION protein_coding - CCDS24271.1 1 1200.0 3.0 7.074 0.8 113.0 0.0 -4,-5 0.406 12 14.328 MINOR ENSMUSG00000095721 Gm7137 ENSMUST00000180161 ENSMUSP00000136480 TRANSLATION protein_coding - - - 236.0 0.0 0.0 0.0 39.8 0.0 -4,-7 0.7046 - 6.0 PRINCIPAL:1 ENSMUSG00000054452 Tle5 ENSMUST00000220282 - NO_TRANSLATION retained_intron ENSMUSG00000054452 Tle5 ENSMUST00000218574 - NO_TRANSLATION retained_intron ENSMUSG00000054452 Tle5 ENSMUST00000218611 - NO_TRANSLATION retained_intron ENSMUSG00000054452 Tle5 ENSMUST00000218690 - NO_TRANSLATION retained_intron ENSMUSG00000054452 Tle5 ENSMUST00000220368 - NO_TRANSLATION retained_intron ENSMUSG00000054452 Tle5 ENSMUST00000217807 - NO_TRANSLATION retained_intron ENSMUSG00000054452 Tle5 ENSMUST00000219870 - NO_TRANSLATION retained_intron ENSMUSG00000054452 Tle5 ENSMUST00000218432 - NO_TRANSLATION retained_intron ENSMUSG00000054452 Tle5 ENSMUST00000220348 ENSMUSP00000151523 TRANSLATION nonsense_mediated_decay start - 3 74.0 0.0 2.25 0.0 144.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054452 Tle5 ENSMUST00000002518 ENSMUSP00000002518 TRANSLATION protein_coding - CCDS24062.1 1 197.0 0.0 3.95 0.0 240.6 0.0 -4,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000013833 Med16 ENSMUST00000165684 ENSMUSP00000129375 TRANSLATION protein_coding - - 1 828.0 0.0 8.0639 29.8 447.3 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000013833 Med16 ENSMUST00000164705 ENSMUSP00000129229 TRANSLATION protein_coding stop - 3 172.0 0.0 3.6089 0.0 101.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000013833 Med16 ENSMUST00000163125 - NO_TRANSLATION retained_intron ENSMUSG00000013833 Med16 ENSMUST00000166964 ENSMUSP00000128463 TRANSLATION protein_coding stop - 3 162.0 0.0 3.16 0.0 57.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000013833 Med16 ENSMUST00000170409 ENSMUSP00000126729 TRANSLATION protein_coding stop - 3 104.0 0.0 2.5 0.0 27.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000013833 Med16 ENSMUST00000105378 ENSMUSP00000101017 TRANSLATION protein_coding - - 1 828.0 0.0 8.0639 29.8 447.3 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000013833 Med16 ENSMUST00000170375 - NO_TRANSLATION retained_intron ENSMUSG00000019810 Fuca2 ENSMUST00000166466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019810 Fuca2 ENSMUST00000130865 ENSMUSP00000116143 TRANSLATION protein_coding stop - 5 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0347 - -2.0 MINOR ENSMUSG00000019810 Fuca2 ENSMUST00000120549 ENSMUSP00000114021 TRANSLATION protein_coding stop - 3 95.0 0.0 2.0 0.0 127.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000019810 Fuca2 ENSMUST00000121465 ENSMUSP00000113499 TRANSLATION protein_coding - CCDS23701.1 1 461.0 0.0 8.5 0.0 508.8 0.0 3,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000019810 Fuca2 ENSMUST00000150048 - NO_TRANSLATION retained_intron ENSMUSG00000019810 Fuca2 ENSMUST00000060212 ENSMUSP00000055519 TRANSLATION protein_coding - CCDS23701.1 1 461.0 0.0 8.5 0.0 508.8 0.0 3,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000004207 Psap ENSMUST00000165878 ENSMUSP00000126407 TRANSLATION protein_coding - CCDS48568.1 1 551.0 0.0 6.9 0.0 398.2 0.0 -4,-6 0.5434 25 8.0 ALTERNATIVE:2 ENSMUSG00000004207 Psap ENSMUST00000179238 ENSMUSP00000137476 TRANSLATION protein_coding - CCDS35911.1 5 557.0 0.0 6.9 0.1 394.9 0.0 4,-1 0.5536 24 8.0 ALTERNATIVE:2 ENSMUSG00000004207 Psap ENSMUST00000105465 ENSMUSP00000101105 TRANSLATION protein_coding - CCDS48567.1 1 554.0 0.0 6.9 0.1 398.2 0.0 4,-1 1.0 25 8.0 PRINCIPAL:2 ENSMUSG00000004207 Psap ENSMUST00000177779 ENSMUSP00000137286 TRANSLATION protein_coding - - 5 557.0 0.0 6.775 0.1 395.5 0.0 4,-1 0.239 24 7.748 ALTERNATIVE:2 ENSMUSG00000033416 Gucd1 ENSMUST00000123505 ENSMUSP00000117292 TRANSLATION protein_coding stop - 3 93.0 0.0 0.0 0.0 122.2 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000033416 Gucd1 ENSMUST00000145890 ENSMUSP00000123254 TRANSLATION nonsense_mediated_decay - - 1 211.0 0.0 0.0 0.0 266.0 0.0 -4,-5 0.0569 2 -2.0 MINOR ENSMUSG00000033416 Gucd1 ENSMUST00000138122 ENSMUSP00000119821 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033416 Gucd1 ENSMUST00000129307 - NO_TRANSLATION retained_intron ENSMUSG00000033416 Gucd1 ENSMUST00000153125 ENSMUSP00000117061 TRANSLATION protein_coding start - 1 115.0 0.0 0.0 0.0 110.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033416 Gucd1 ENSMUST00000118936 ENSMUSP00000113976 TRANSLATION protein_coding - CCDS83713.1 1 200.0 0.0 0.0 13.9 271.1 0.0 -4,-5 0.862 2 7.57 MINOR ENSMUSG00000033416 Gucd1 ENSMUST00000128419 ENSMUSP00000121405 TRANSLATION protein_coding start/stop - 5 160.0 0.0 0.0 0.0 195.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000033416 Gucd1 ENSMUST00000147269 ENSMUSP00000118894 TRANSLATION protein_coding stop - 2 135.0 0.0 0.0 0.0 174.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033416 Gucd1 ENSMUST00000039796 ENSMUSP00000043000 TRANSLATION protein_coding - CCDS35936.1 1 239.0 0.0 0.0 11.3 311.6 0.0 -4,-5 1.0 2 9.192 PRINCIPAL:1 ENSMUSG00000033416 Gucd1 ENSMUST00000136763 ENSMUSP00000114435 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 33.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033416 Gucd1 ENSMUST00000219774 ENSMUSP00000151443 TRANSLATION protein_coding - - 3 209.0 0.0 0.0 0.0 144.9 0.0 -4,-5 0.0002 1 0.0 MINOR ENSMUSG00000049217 Or6c3 ENSMUST00000056961 ENSMUSP00000054710 TRANSLATION protein_coding - CCDS24319.1 - 311.0 0.0 1.0 12.5 167.1 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049217 Or6c3 ENSMUST00000213222 ENSMUSP00000151054 TRANSLATION protein_coding - CCDS24319.1 5 311.0 0.0 1.0 12.5 167.1 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020262 Adarb1 ENSMUST00000105406 ENSMUSP00000101046 TRANSLATION protein_coding - CCDS35948.1 1 711.0 20.0 8.0264 1.1 474.6 0.0 -4,-5 0.2901 12 17.816 MINOR ENSMUSG00000020262 Adarb1 ENSMUST00000154607 - NO_TRANSLATION retained_intron ENSMUSG00000020262 Adarb1 ENSMUST00000098374 ENSMUSP00000095976 TRANSLATION protein_coding - CCDS35948.1 1 711.0 20.0 8.0264 1.1 474.6 0.0 -4,-5 0.2901 12 17.816 MINOR ENSMUSG00000020262 Adarb1 ENSMUST00000020496 ENSMUSP00000020496 TRANSLATION protein_coding - CCDS35949.1 1 701.0 20.0 8.0 20.6 478.0 0.0 -4,-5 1.0 12 21.946 PRINCIPAL:1 ENSMUSG00000020262 Adarb1 ENSMUST00000144547 ENSMUSP00000122102 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020262 Adarb1 ENSMUST00000155117 - NO_TRANSLATION retained_intron ENSMUSG00000020262 Adarb1 ENSMUST00000149738 - NO_TRANSLATION retained_intron ENSMUSG00000020262 Adarb1 ENSMUST00000126073 ENSMUSP00000114608 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020262 Adarb1 ENSMUST00000146319 - NO_TRANSLATION retained_intron ENSMUSG00000020262 Adarb1 ENSMUST00000150227 - NO_TRANSLATION retained_intron ENSMUSG00000020262 Adarb1 ENSMUST00000156583 - NO_TRANSLATION retained_intron ENSMUSG00000020262 Adarb1 ENSMUST00000150512 - NO_TRANSLATION retained_intron ENSMUSG00000020262 Adarb1 ENSMUST00000105404 ENSMUSP00000101044 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020079 Supv3l1 ENSMUST00000159042 - NO_TRANSLATION retained_intron ENSMUSG00000020079 Supv3l1 ENSMUST00000161830 - NO_TRANSLATION retained_intron ENSMUSG00000020079 Supv3l1 ENSMUST00000161941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020079 Supv3l1 ENSMUST00000162023 ENSMUSP00000137905 TRANSLATION nonsense_mediated_decay start - 1 256.0 8.0 4.548 0.0 0.0 0.0 0,4 0.0009 5 -2.0 MINOR ENSMUSG00000020079 Supv3l1 ENSMUST00000020273 ENSMUSP00000020273 TRANSLATION protein_coding - CCDS35920.1 1 779.0 9.0 13.45 6.9 99.7 0.0 0,4 1.0 24 20.0 PRINCIPAL:1 ENSMUSG00000049420 Tmem200a ENSMUST00000219651 ENSMUSP00000151832 TRANSLATION protein_coding stop - 3 237.0 0.0 0.0 0.0 211.4 2.0 -4,-7 0.0468 3 -2.0 MINOR ENSMUSG00000049420 Tmem200a ENSMUST00000217910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049420 Tmem200a ENSMUST00000219338 ENSMUSP00000151494 TRANSLATION protein_coding stop - 5 180.0 0.0 0.0 0.0 211.4 2.0 -4,-7 0.0433 1 -2.0 MINOR ENSMUSG00000049420 Tmem200a ENSMUST00000219872 ENSMUSP00000151559 TRANSLATION protein_coding stop - 5 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049420 Tmem200a ENSMUST00000066049 ENSMUSP00000064080 TRANSLATION protein_coding - CCDS23755.1 1 491.0 0.0 0.0 26.0 211.4 2.0 -4,-7 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000049420 Tmem200a ENSMUST00000218232 ENSMUSP00000151861 TRANSLATION protein_coding - CCDS23755.1 1 491.0 0.0 0.0 26.0 211.4 2.0 -4,-7 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000060205 Or7a41 ENSMUST00000203906 ENSMUSP00000144814 TRANSLATION protein_coding - CCDS23975.1 5 319.0 0.0 1.0 4.7 166.8 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060205 Or7a41 ENSMUST00000082244 ENSMUSP00000080872 TRANSLATION protein_coding - CCDS23975.1 - 319.0 0.0 1.0 4.7 166.8 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000019876 Pkib ENSMUST00000175852 ENSMUSP00000135666 TRANSLATION protein_coding - CCDS23855.1 1 78.0 0.0 0.0 11.0 96.1 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000019876 Pkib ENSMUST00000177438 ENSMUSP00000135774 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019876 Pkib ENSMUST00000176741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019876 Pkib ENSMUST00000177473 ENSMUSP00000135835 TRANSLATION protein_coding - CCDS23855.1 3 78.0 0.0 0.0 11.0 96.1 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000019876 Pkib ENSMUST00000066028 ENSMUSP00000067532 TRANSLATION protein_coding - CCDS23855.1 1 78.0 0.0 0.0 11.0 96.1 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000019876 Pkib ENSMUST00000176225 - NO_TRANSLATION retained_intron ENSMUSG00000019876 Pkib ENSMUST00000177299 - NO_TRANSLATION retained_intron ENSMUSG00000019876 Pkib ENSMUST00000177325 ENSMUSP00000135280 TRANSLATION protein_coding - CCDS23855.1 1 78.0 0.0 0.0 11.0 96.1 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000019876 Pkib ENSMUST00000075992 ENSMUSP00000075374 TRANSLATION protein_coding - CCDS23855.1 1 78.0 0.0 0.0 11.0 96.1 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000019876 Pkib ENSMUST00000095668 ENSMUSP00000093329 TRANSLATION protein_coding - CCDS23854.1 1 110.0 0.0 0.0 2.6 96.1 0.0 -4,-5 0.2495 3 6.48 MINOR ENSMUSG00000019876 Pkib ENSMUST00000176354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003345 Csnk1g2 ENSMUST00000079773 ENSMUSP00000078706 TRANSLATION protein_coding - CCDS24029.1 1 442.0 3.0 7.38 1.4 100.0 0.0 -4,-5 0.1644 1 13.688 MINOR ENSMUSG00000003345 Csnk1g2 ENSMUST00000220431 - NO_TRANSLATION retained_intron ENSMUSG00000003345 Csnk1g2 ENSMUST00000220025 - NO_TRANSLATION retained_intron ENSMUSG00000003345 Csnk1g2 ENSMUST00000220163 ENSMUSP00000151911 TRANSLATION nonsense_mediated_decay start - 3 48.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003345 Csnk1g2 ENSMUST00000217902 - NO_TRANSLATION retained_intron ENSMUSG00000003345 Csnk1g2 ENSMUST00000218093 - NO_TRANSLATION retained_intron ENSMUSG00000003345 Csnk1g2 ENSMUST00000219814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003345 Csnk1g2 ENSMUST00000085435 ENSMUSP00000082560 TRANSLATION protein_coding - CCDS48638.1 1 415.0 3.0 7.38 28.6 122.8 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000039508 Calhm4 ENSMUST00000218239 ENSMUSP00000151481 TRANSLATION protein_coding - - - 190.0 0.0 0.8 0.0 171.5 2.0 -4,-7 0.0022 - 3.306 MINOR ENSMUSG00000039508 Calhm4 ENSMUST00000048052 ENSMUSP00000042466 TRANSLATION protein_coding - CCDS35878.1 1 315.0 0.0 1.8 10.7 260.8 3.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019986 Ahi1 ENSMUST00000105525 ENSMUSP00000101164 TRANSLATION protein_coding - CCDS35860.1 1 1047.0 0.0 4.94 0.4 103.4 0.0 -4,-5 1.0 23 12.0 PRINCIPAL:1 ENSMUSG00000019986 Ahi1 ENSMUST00000213104 ENSMUSP00000149010 TRANSLATION nonsense_mediated_decay - - 2 1005.0 0.0 4.94 0.0 103.4 0.0 -4,-5 0.2315 23 -2.0 MINOR ENSMUSG00000019986 Ahi1 ENSMUST00000213852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019986 Ahi1 ENSMUST00000214745 - NO_TRANSLATION retained_intron ENSMUSG00000019986 Ahi1 ENSMUST00000214893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019986 Ahi1 ENSMUST00000163505 ENSMUSP00000127043 TRANSLATION protein_coding - CCDS48512.1 1 142.0 0.0 1.6 0.0 61.8 0.0 -4,-5 0.0158 2 3.504 MINOR ENSMUSG00000019986 Ahi1 ENSMUST00000215543 - NO_TRANSLATION retained_intron ENSMUSG00000009114 2610028H24Rik ENSMUST00000092406 ENSMUSP00000090061 TRANSLATION protein_coding - CCDS35945.1 1 270.0 0.0 0.6 0.4 102.6 0.0 -4,-5 0.366 2 6.0 ALTERNATIVE:2 ENSMUSG00000009114 2610028H24Rik ENSMUST00000105415 ENSMUSP00000101055 TRANSLATION protein_coding - - 1 249.0 0.0 0.6 0.0 102.6 0.0 -4,-5 0.7738 2 6.0 PRINCIPAL:2 ENSMUSG00000112419 Cdc5lrt6 ENSMUST00000179851 ENSMUSP00000151369 TRANSLATION protein_coding - - - 802.0 0.0 0.6 30.9 348.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000052798 Nup107 ENSMUST00000220323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052798 Nup107 ENSMUST00000218810 - NO_TRANSLATION retained_intron ENSMUSG00000052798 Nup107 ENSMUST00000218576 ENSMUSP00000151757 TRANSLATION nonsense_mediated_decay - - 1 336.0 0.0 1.28 0.0 73.3 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000052798 Nup107 ENSMUST00000218375 - NO_TRANSLATION retained_intron ENSMUSG00000052798 Nup107 ENSMUST00000220203 - NO_TRANSLATION retained_intron ENSMUSG00000052798 Nup107 ENSMUST00000064848 ENSMUSP00000063590 TRANSLATION protein_coding - CCDS36068.1 1 926.0 0.0 14.04 8.6 714.9 0.0 -4,-7 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000052798 Nup107 ENSMUST00000218777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019868 Vta1 ENSMUST00000151805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019868 Vta1 ENSMUST00000149485 ENSMUSP00000118498 TRANSLATION protein_coding start/stop - 3 251.0 0.0 4.83 0.0 170.1 0.0 -4,-7 0.0195 6 -2.0 MINOR ENSMUSG00000019868 Vta1 ENSMUST00000156398 - NO_TRANSLATION retained_intron ENSMUSG00000019868 Vta1 ENSMUST00000133927 ENSMUSP00000119958 TRANSLATION nonsense_mediated_decay start - 5 70.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019868 Vta1 ENSMUST00000154132 ENSMUSP00000119829 TRANSLATION protein_coding - CCDS23705.1 1 309.0 0.0 4.83 5.8 170.1 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000019868 Vta1 ENSMUST00000020018 ENSMUSP00000020018 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000035383 Pmch ENSMUST00000048621 ENSMUSP00000044352 TRANSLATION protein_coding - CCDS24105.1 1 165.0 0.0 0.0 16.6 159.1 0.0 0,-4 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000020130 Tbc1d15 ENSMUST00000219274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020130 Tbc1d15 ENSMUST00000217886 - NO_TRANSLATION retained_intron ENSMUSG00000020130 Tbc1d15 ENSMUST00000020339 ENSMUSP00000020339 TRANSLATION protein_coding - CCDS24176.1 1 671.0 0.0 8.95 8.0 321.5 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000020130 Tbc1d15 ENSMUST00000217843 - NO_TRANSLATION retained_intron ENSMUSG00000036816 Atoh7 ENSMUST00000219964 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036816 Atoh7 ENSMUST00000044059 ENSMUSP00000039801 TRANSLATION protein_coding - CCDS23896.1 - 149.0 0.0 0.8 8.3 63.7 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044312 Neurog3 ENSMUST00000218216 - NO_TRANSLATION retained_intron ENSMUSG00000044312 Neurog3 ENSMUST00000218121 ENSMUSP00000151551 TRANSLATION protein_coding stop - 5 50.0 0.0 1.0 0.0 39.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044312 Neurog3 ENSMUST00000050103 ENSMUSP00000054054 TRANSLATION protein_coding - CCDS23887.1 1 214.0 0.0 1.4 11.0 57.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050663 Trhde ENSMUST00000239411 ENSMUSP00000159381 TRANSLATION protein_coding - - - 1066.0 13.0 12.5 1.2 534.2 1.0 -4,-5 0.325 10 15.0 ALTERNATIVE:2 ENSMUSG00000050663 Trhde ENSMUST00000061632 ENSMUSP00000057449 TRANSLATION protein_coding - CCDS24175.1 1 1025.0 13.0 12.5 1.2 534.2 1.0 -4,-6 1.0 10 15.0 PRINCIPAL:2 ENSMUSG00000050663 Trhde ENSMUST00000152702 - NO_TRANSLATION retained_intron ENSMUSG00000050663 Trhde ENSMUST00000152282 - NO_TRANSLATION retained_intron ENSMUSG00000059134 Or6c70 ENSMUST00000213742 ENSMUSP00000150716 TRANSLATION protein_coding - CCDS24341.1 5 310.0 0.0 1.0 12.5 159.0 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059134 Or6c70 ENSMUST00000081367 ENSMUSP00000080106 TRANSLATION protein_coding - CCDS24341.1 - 310.0 0.0 1.0 12.5 159.0 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059134 Or6c70 ENSMUST00000216966 ENSMUSP00000150458 TRANSLATION protein_coding - CCDS24341.1 5 310.0 0.0 1.0 12.5 159.0 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020189 Osbpl8 ENSMUST00000095310 ENSMUSP00000092948 TRANSLATION protein_coding - CCDS24166.1 1 847.0 0.0 8.21375 13.6 348.3 1.0 -4,-7 0.9122 19 9.476 ALTERNATIVE:1 ENSMUSG00000020189 Osbpl8 ENSMUST00000217693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020189 Osbpl8 ENSMUST00000220139 - NO_TRANSLATION retained_intron ENSMUSG00000020189 Osbpl8 ENSMUST00000238838 ENSMUSP00000158904 TRANSLATION protein_coding stop - - 695.0 0.0 8.09 0.0 334.0 0.0 -4,-2 0.0219 14 -2.0 MINOR ENSMUSG00000020189 Osbpl8 ENSMUST00000105275 ENSMUSP00000100911 TRANSLATION protein_coding - CCDS36056.1 1 889.0 0.0 8.21375 15.5 348.3 1.0 -4,-5 1.0 21 10.0 PRINCIPAL:3 ENSMUSG00000019806 Aig1 ENSMUST00000162610 ENSMUSP00000125366 TRANSLATION protein_coding - CCDS83682.1 1 238.0 0.0 5.33 21.0 251.6 8.0 -2,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000019806 Aig1 ENSMUST00000019942 ENSMUSP00000019942 TRANSLATION protein_coding - CCDS23703.1 1 262.0 0.0 5.0 0.0 251.6 8.0 -2,-5 0.1211 2 11.34 MINOR ENSMUSG00000019806 Aig1 ENSMUST00000105534 ENSMUSP00000101174 TRANSLATION protein_coding - - 5 180.0 0.0 4.0 0.3 200.9 4.0 -2,-5 0.0049 1 6.3 MINOR ENSMUSG00000019806 Aig1 ENSMUST00000162869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019806 Aig1 ENSMUST00000162798 - NO_TRANSLATION retained_intron ENSMUSG00000019806 Aig1 ENSMUST00000162174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019806 Aig1 ENSMUST00000161729 - NO_TRANSLATION retained_intron ENSMUSG00000020196 Cabin1 ENSMUST00000218951 - NO_TRANSLATION retained_intron ENSMUSG00000020196 Cabin1 ENSMUST00000218790 ENSMUSP00000151436 TRANSLATION nonsense_mediated_decay start - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000020196 Cabin1 ENSMUST00000217664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020196 Cabin1 ENSMUST00000217810 ENSMUSP00000152043 TRANSLATION protein_coding start - 1 473.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0025 1 -2.0 MINOR ENSMUSG00000020196 Cabin1 ENSMUST00000218486 - NO_TRANSLATION retained_intron ENSMUSG00000020196 Cabin1 ENSMUST00000219806 ENSMUSP00000151879 TRANSLATION protein_coding start/stop - 3 191.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020196 Cabin1 ENSMUST00000219682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020196 Cabin1 ENSMUST00000218878 ENSMUSP00000151485 TRANSLATION nonsense_mediated_decay start - 5 32.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0091 - -2.0 MINOR ENSMUSG00000020196 Cabin1 ENSMUST00000218814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020196 Cabin1 ENSMUST00000001712 ENSMUSP00000001712 TRANSLATION protein_coding - CCDS35938.1 5 2187.0 0.0 1.2 0.4 79.5 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000020196 Cabin1 ENSMUST00000218469 ENSMUSP00000151933 TRANSLATION protein_coding stop - 3 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0277 - -2.0 MINOR ENSMUSG00000020196 Cabin1 ENSMUST00000220009 - NO_TRANSLATION retained_intron ENSMUSG00000020196 Cabin1 ENSMUST00000218480 - NO_TRANSLATION retained_intron ENSMUSG00000050108 Bpifc ENSMUST00000105304 ENSMUSP00000100941 TRANSLATION protein_coding - - 5 82.0 0.0 0.9 0.0 0.0 0.0 3,-2 0.0007 1 0.0 MINOR ENSMUSG00000050108 Bpifc ENSMUST00000061699 ENSMUSP00000063107 TRANSLATION protein_coding - CCDS48658.1 1 507.0 0.0 5.585 8.2 262.5 0.0 3,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000020048 Hsp90b1 ENSMUST00000134515 - NO_TRANSLATION retained_intron ENSMUSG00000020048 Hsp90b1 ENSMUST00000020238 ENSMUSP00000020238 TRANSLATION protein_coding - CCDS36019.1 1 802.0 9.0 12.5 9.6 813.4 0.0 4,-1 1.0 45 21.0 PRINCIPAL:1 ENSMUSG00000020048 Hsp90b1 ENSMUST00000129413 ENSMUSP00000122710 TRANSLATION protein_coding start/stop - 5 373.0 0.0 6.5 0.0 542.3 0.0 -4,-5 0.0056 32 -2.0 MINOR ENSMUSG00000020048 Hsp90b1 ENSMUST00000129178 - NO_TRANSLATION retained_intron ENSMUSG00000020048 Hsp90b1 ENSMUST00000146897 - NO_TRANSLATION retained_intron ENSMUSG00000050035 Fhl4 ENSMUST00000216889 ENSMUSP00000150570 TRANSLATION protein_coding - CCDS24086.1 1 279.0 32.0 1.0 21.2 165.4 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000050035 Fhl4 ENSMUST00000059383 ENSMUSP00000050054 TRANSLATION protein_coding - CCDS24086.1 1 279.0 32.0 1.0 21.2 165.4 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000020224 Llph ENSMUST00000130198 ENSMUSP00000118254 TRANSLATION protein_coding - CCDS24206.1 3 130.0 0.0 0.0 3.1 151.5 0.0 -4,-6 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000020224 Llph ENSMUST00000020444 ENSMUSP00000020444 TRANSLATION protein_coding - CCDS24206.1 1 130.0 0.0 0.0 3.1 151.5 0.0 -4,-6 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000020224 Llph ENSMUST00000220107 ENSMUSP00000151942 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 0.0 0.0 82.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000096481 Gm3250 ENSMUST00000167358 ENSMUSP00000132276 TRANSLATION protein_coding - - - 230.0 0.0 0.0 0.0 53.1 0.0 -4,-5 0.7206 - 6.0 PRINCIPAL:1 ENSMUSG00000039552 Rsph4a ENSMUST00000169670 ENSMUSP00000131647 TRANSLATION protein_coding - CCDS48534.1 1 716.0 0.0 1.08 0.0 673.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000019951 Bltp3b ENSMUST00000220375 ENSMUSP00000151755 TRANSLATION protein_coding stop - 1 590.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0038 17 -2.0 MINOR ENSMUSG00000019951 Bltp3b ENSMUST00000218776 ENSMUSP00000151698 TRANSLATION nonsense_mediated_decay start - 1 167.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000019951 Bltp3b ENSMUST00000219749 - NO_TRANSLATION retained_intron ENSMUSG00000019951 Bltp3b ENSMUST00000219117 - NO_TRANSLATION retained_intron ENSMUSG00000019951 Bltp3b ENSMUST00000219712 ENSMUSP00000151385 TRANSLATION nonsense_mediated_decay - - 1 69.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019951 Bltp3b ENSMUST00000219819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019951 Bltp3b ENSMUST00000218607 ENSMUSP00000151726 TRANSLATION protein_coding start - 1 340.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 11 -2.0 MINOR ENSMUSG00000019951 Bltp3b ENSMUST00000020112 ENSMUSP00000020112 TRANSLATION protein_coding - CCDS36028.1 1 1457.0 0.0 0.314 3.7 65.4 0.0 -4,-7 1.0 37 13.0 PRINCIPAL:1 ENSMUSG00000044499 Hs3st5 ENSMUST00000171521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044499 Hs3st5 ENSMUST00000058738 ENSMUSP00000060229 TRANSLATION protein_coding - CCDS35881.1 1 346.0 18.0 1.0 27.9 122.1 0.0 -2,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000044499 Hs3st5 ENSMUST00000168572 ENSMUSP00000129434 TRANSLATION protein_coding - CCDS35881.1 1 346.0 18.0 1.0 27.9 122.1 0.0 -2,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000044499 Hs3st5 ENSMUST00000172357 - NO_TRANSLATION retained_intron ENSMUSG00000044499 Hs3st5 ENSMUST00000167191 ENSMUSP00000130778 TRANSLATION protein_coding - CCDS35881.1 1 346.0 18.0 1.0 27.9 122.1 0.0 -2,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000014498 Ankrd52 ENSMUST00000166577 ENSMUSP00000128794 TRANSLATION protein_coding start - 3 188.0 0.0 3.25 0.0 71.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000014498 Ankrd52 ENSMUST00000014642 ENSMUSP00000014642 TRANSLATION protein_coding - CCDS24274.1 1 1076.0 0.0 16.8545 17.8 501.8 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000014498 Ankrd52 ENSMUST00000167990 - NO_TRANSLATION retained_intron ENSMUSG00000112223 Krtap10-10 ENSMUST00000218843 ENSMUSP00000151758 TRANSLATION protein_coding - - - 217.0 0.0 0.0 0.0 64.1 0.0 -4,-6 0.7094 - 6.0 PRINCIPAL:1 ENSMUSG00000091779 Gm21293 ENSMUST00000180664 ENSMUSP00000138043 TRANSLATION protein_coding - - 3 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000091779 Gm21293 ENSMUST00000181634 ENSMUSP00000137742 TRANSLATION protein_coding - - 2 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000044005 Gls2 ENSMUST00000123291 ENSMUSP00000124797 TRANSLATION protein_coding stop - 3 135.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000044005 Gls2 ENSMUST00000159440 ENSMUSP00000124239 TRANSLATION nonsense_mediated_decay - - 1 136.0 0.0 2.0 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000044005 Gls2 ENSMUST00000134461 - NO_TRANSLATION retained_intron ENSMUSG00000044005 Gls2 ENSMUST00000145591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044005 Gls2 ENSMUST00000132441 ENSMUSP00000115788 TRANSLATION protein_coding start - 5 176.0 0.0 4.8 0.0 75.0 0.0 -4,-7 0.0004 3 -2.0 MINOR ENSMUSG00000044005 Gls2 ENSMUST00000044776 ENSMUSP00000047376 TRANSLATION protein_coding - CCDS24263.1 1 602.0 10.0 14.58 8.4 434.3 0.0 -4,-1 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000044005 Gls2 ENSMUST00000143827 ENSMUSP00000119763 TRANSLATION nonsense_mediated_decay - - 5 186.0 0.0 2.0 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000044005 Gls2 ENSMUST00000134104 ENSMUSP00000123436 TRANSLATION nonsense_mediated_decay start - 1 201.0 0.0 3.3 0.0 0.0 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000044005 Gls2 ENSMUST00000135441 - NO_TRANSLATION retained_intron ENSMUSG00000044005 Gls2 ENSMUST00000123385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044005 Gls2 ENSMUST00000152928 - NO_TRANSLATION retained_intron ENSMUSG00000001436 Slc19a1 ENSMUST00000144234 ENSMUSP00000116784 TRANSLATION protein_coding - CCDS35947.1 1 512.0 0.0 3.319 1.1 545.9 25.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000001436 Slc19a1 ENSMUST00000136925 ENSMUSP00000119382 TRANSLATION protein_coding - - 1 476.0 0.0 3.319 0.0 542.3 24.0 -4,-7 0.1543 1 11.784 MINOR ENSMUSG00000001436 Slc19a1 ENSMUST00000131031 ENSMUSP00000114884 TRANSLATION protein_coding start - 3 116.0 0.0 1.888 0.0 144.7 9.0 -1,-5 0.0033 - -2.0 MINOR ENSMUSG00000001436 Slc19a1 ENSMUST00000136150 ENSMUSP00000121237 TRANSLATION protein_coding stop - 3 243.0 0.0 0.831 0.0 299.6 13.0 -4,-7 0.0033 1 -2.0 MINOR ENSMUSG00000001436 Slc19a1 ENSMUST00000133059 ENSMUSP00000120266 TRANSLATION protein_coding stop - 3 71.0 0.0 0.066 0.0 60.6 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001436 Slc19a1 ENSMUST00000105410 ENSMUSP00000101050 TRANSLATION protein_coding - CCDS35947.1 1 512.0 0.0 3.319 1.1 545.9 25.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000001436 Slc19a1 ENSMUST00000132984 ENSMUSP00000116657 TRANSLATION protein_coding stop - 2 232.0 0.0 0.831 0.0 292.6 13.0 -4,-7 0.0045 - -2.0 MINOR ENSMUSG00000001436 Slc19a1 ENSMUST00000130703 ENSMUSP00000115658 TRANSLATION protein_coding stop - 3 80.0 0.0 0.066 0.0 46.1 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000001436 Slc19a1 ENSMUST00000127249 - NO_TRANSLATION retained_intron ENSMUSG00000074785 Plxnc1 ENSMUST00000218839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074785 Plxnc1 ENSMUST00000181244 ENSMUSP00000138038 TRANSLATION nonsense_mediated_decay start - 3 101.0 0.0 0.03 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000074785 Plxnc1 ENSMUST00000180573 - NO_TRANSLATION retained_intron ENSMUSG00000074785 Plxnc1 ENSMUST00000180514 - NO_TRANSLATION retained_intron ENSMUSG00000074785 Plxnc1 ENSMUST00000099337 ENSMUSP00000096939 TRANSLATION protein_coding - CCDS48676.1 1 1574.0 0.0 16.833 5.3 777.8 0.0 1,-1 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000020014 Cfap54 ENSMUST00000171781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020014 Cfap54 ENSMUST00000220280 ENSMUSP00000151550 TRANSLATION protein_coding start/stop - 5 160.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000020014 Cfap54 ENSMUST00000170065 ENSMUSP00000126955 TRANSLATION nonsense_mediated_decay start - 5 167.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000020014 Cfap54 ENSMUST00000168080 - NO_TRANSLATION retained_intron ENSMUSG00000020014 Cfap54 ENSMUST00000067705 ENSMUSP00000150412 TRANSLATION nonsense_mediated_decay start - 1 312.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0055 - -2.0 MINOR ENSMUSG00000020014 Cfap54 ENSMUST00000163209 ENSMUSP00000127637 TRANSLATION nonsense_mediated_decay start - 1 187.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020014 Cfap54 ENSMUST00000165090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020014 Cfap54 ENSMUST00000168110 ENSMUSP00000129517 TRANSLATION protein_coding - - 5 3106.0 0.0 0.0 0.0 890.3 0.0 -4,-6 0.5593 1 2.0 ALTERNATIVE:2 ENSMUSG00000020014 Cfap54 ENSMUST00000168617 ENSMUSP00000127905 TRANSLATION protein_coding stop - 5 598.0 0.0 0.0 0.0 732.5 0.0 -4,-6 0.0833 - -2.0 MINOR ENSMUSG00000020014 Cfap54 ENSMUST00000164979 ENSMUSP00000129650 TRANSLATION protein_coding start - 5 314.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0036 - -2.0 MINOR ENSMUSG00000020014 Cfap54 ENSMUST00000212902 ENSMUSP00000148636 TRANSLATION protein_coding - - 1 3171.0 0.0 0.0 0.1 890.3 0.0 -4,-6 0.9845 1 2.0 PRINCIPAL:2 ENSMUSG00000025410 Dctn2 ENSMUST00000218556 - NO_TRANSLATION retained_intron ENSMUSG00000025410 Dctn2 ENSMUST00000218752 - NO_TRANSLATION retained_intron ENSMUSG00000025410 Dctn2 ENSMUST00000217692 - NO_TRANSLATION retained_intron ENSMUSG00000025410 Dctn2 ENSMUST00000220418 - NO_TRANSLATION retained_intron ENSMUSG00000025410 Dctn2 ENSMUST00000026479 ENSMUSP00000026479 TRANSLATION protein_coding - CCDS24234.1 1 402.0 0.0 10.5 31.4 420.6 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000019929 Dcn ENSMUST00000163448 ENSMUSP00000131431 TRANSLATION protein_coding - CCDS24141.1 1 354.0 0.0 6.8 21.3 188.2 0.0 4,-1 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000019929 Dcn ENSMUST00000105287 ENSMUSP00000100924 TRANSLATION protein_coding - CCDS24141.1 1 354.0 0.0 6.8 21.3 188.2 0.0 4,-1 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000019929 Dcn ENSMUST00000218853 - NO_TRANSLATION retained_intron ENSMUSG00000019929 Dcn ENSMUST00000219539 - NO_TRANSLATION retained_intron ENSMUSG00000019929 Dcn ENSMUST00000219784 ENSMUSP00000151241 TRANSLATION protein_coding stop - 3 22.0 0.0 0.0 0.0 0.0 0.0 3,-3 0.0 - -2.0 MINOR ENSMUSG00000014329 Bicc1 ENSMUST00000014473 ENSMUSP00000014473 TRANSLATION protein_coding - CCDS83710.1 1 951.0 0.0 2.11 5.5 153.7 0.0 -4,-5 0.8182 12 13.626 MINOR ENSMUSG00000014329 Bicc1 ENSMUST00000143791 ENSMUSP00000123201 TRANSLATION protein_coding - CCDS23915.1 1 977.0 0.0 2.11 8.9 155.1 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000014329 Bicc1 ENSMUST00000144740 - NO_TRANSLATION retained_intron ENSMUSG00000014329 Bicc1 ENSMUST00000131445 ENSMUSP00000119137 TRANSLATION protein_coding - - 1 869.0 0.0 2.11 1.2 153.7 0.0 -4,-5 0.1635 11 11.991 MINOR ENSMUSG00000074802 Gas2l3 ENSMUST00000105298 ENSMUSP00000100935 TRANSLATION protein_coding - CCDS24115.1 1 683.0 4.0 3.405 0.1 143.6 0.0 -4,-6 0.3465 2 12.0 ALTERNATIVE:2 ENSMUSG00000074802 Gas2l3 ENSMUST00000220071 ENSMUSP00000151992 TRANSLATION protein_coding stop - 5 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074802 Gas2l3 ENSMUST00000220128 ENSMUSP00000151240 TRANSLATION protein_coding - - 1 368.0 4.0 3.405 0.0 143.6 0.0 -4,-6 0.755 - 12.0 PRINCIPAL:2 ENSMUSG00000074802 Gas2l3 ENSMUST00000218764 ENSMUSP00000151428 TRANSLATION protein_coding stop - 3 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074802 Gas2l3 ENSMUST00000219073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074802 Gas2l3 ENSMUST00000220234 ENSMUSP00000151238 TRANSLATION protein_coding stop - 2 199.0 0.0 2.005 0.0 51.8 0.0 -4,-6 0.0006 - -2.0 MINOR ENSMUSG00000074802 Gas2l3 ENSMUST00000219351 ENSMUSP00000151247 TRANSLATION protein_coding stop - 3 26.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000074802 Gas2l3 ENSMUST00000099374 ENSMUSP00000096973 TRANSLATION protein_coding - CCDS24115.1 1 683.0 4.0 3.405 0.1 143.6 0.0 -4,-6 0.3465 2 12.0 ALTERNATIVE:2 ENSMUSG00000111915 Gm3285 ENSMUST00000218443 ENSMUSP00000151795 TRANSLATION protein_coding - - - 201.0 0.0 0.0 0.0 46.1 0.0 -4,-7 0.6946 - 6.0 PRINCIPAL:1 ENSMUSG00000052613 Pcdh15 ENSMUST00000155701 ENSMUSP00000135495 TRANSLATION protein_coding - - 1 334.0 13.0 6.95 0.0 40.2 0.0 3,-2 0.0012 3 0.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000124046 ENSMUSP00000121130 TRANSLATION protein_coding - - 5 1129.0 58.0 21.16 0.0 325.8 2.0 -4,-5 0.0158 2 1.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000147455 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052613 Pcdh15 ENSMUST00000126920 ENSMUSP00000121939 TRANSLATION protein_coding - CCDS56720.1 5 1916.0 70.0 29.03 0.0 396.3 2.0 3,-2 0.3696 6 9.848 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000152819 ENSMUSP00000123647 TRANSLATION protein_coding - - 1 650.0 13.0 8.28 0.0 40.2 0.0 3,-2 0.0018 4 0.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000123398 - NO_TRANSLATION retained_intron ENSMUSG00000052613 Pcdh15 ENSMUST00000139106 - NO_TRANSLATION retained_intron ENSMUSG00000052613 Pcdh15 ENSMUST00000105429 ENSMUSP00000101069 TRANSLATION protein_coding - CCDS56719.1 5 1867.0 71.0 28.03 0.0 337.8 2.0 3,-2 0.1349 5 7.916 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000129404 ENSMUSP00000117731 TRANSLATION protein_coding - CCDS56721.1 5 1913.0 70.0 29.03 0.0 396.3 2.0 3,-2 0.3696 6 9.848 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000147189 ENSMUSP00000122940 TRANSLATION protein_coding - CCDS48595.1 1 1896.0 71.0 28.78 0.0 356.1 2.0 3,-2 0.2291 5 9.616 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000105424 ENSMUSP00000101064 TRANSLATION protein_coding - CCDS56715.1 5 1938.0 72.0 29.78 0.4 396.3 2.0 3,-2 0.4618 6 12.68 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000149977 ENSMUSP00000118833 TRANSLATION protein_coding - - 5 1675.0 72.0 29.78 6.7 396.3 2.0 3,-2 0.849 6 14.58 ALTERNATIVE:1 ENSMUSG00000052613 Pcdh15 ENSMUST00000152655 ENSMUSP00000118201 TRANSLATION protein_coding - - 1 981.0 31.0 16.03 0.0 164.0 0.0 3,-2 0.0098 5 0.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000092420 ENSMUSP00000090076 TRANSLATION protein_coding - CCDS48594.1 1 1933.0 72.0 29.78 0.4 396.3 2.0 3,-2 0.4619 6 12.68 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000194729 - NO_TRANSLATION retained_intron ENSMUSG00000052613 Pcdh15 ENSMUST00000128843 - NO_TRANSLATION retained_intron ENSMUSG00000052613 Pcdh15 ENSMUST00000191854 ENSMUSP00000141973 TRANSLATION protein_coding - CCDS56717.1 5 1677.0 72.0 29.78 6.7 396.3 2.0 3,-2 1.0 6 14.58 PRINCIPAL:4 ENSMUSG00000052613 Pcdh15 ENSMUST00000193361 ENSMUSP00000141792 TRANSLATION protein_coding - CCDS35934.1 5 1943.0 72.0 29.78 0.4 396.3 2.0 2,-2 0.4592 6 12.68 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000127928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052613 Pcdh15 ENSMUST00000125055 ENSMUSP00000114326 TRANSLATION nonsense_mediated_decay - - 5 684.0 28.0 14.15 0.0 118.0 0.0 3,-2 0.003 - -2.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000192370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052613 Pcdh15 ENSMUST00000193739 ENSMUSP00000142173 TRANSLATION protein_coding - - 5 1677.0 72.0 29.78 7.0 396.3 2.0 2,-2 0.8534 6 14.68 ALTERNATIVE:1 ENSMUSG00000052613 Pcdh15 ENSMUST00000146682 ENSMUSP00000134863 TRANSLATION protein_coding - - 1 415.0 0.0 3.5 0.0 0.0 2.0 -4,-5 0.0013 - 0.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000194315 ENSMUSP00000141594 TRANSLATION protein_coding start - 5 1333.0 45.0 16.83 0.0 278.3 2.0 -4,-6 0.0194 2 -2.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000177420 ENSMUSP00000135849 TRANSLATION protein_coding - CCDS56712.1 1 1176.0 65.0 24.2 0.0 361.1 0.0 2,-2 0.0852 6 2.532 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000105426 ENSMUSP00000101066 TRANSLATION protein_coding - CCDS56718.1 5 1936.0 72.0 29.78 0.4 396.3 2.0 3,-2 0.4619 6 12.68 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000131724 ENSMUSP00000122466 TRANSLATION protein_coding - CCDS56716.1 5 1518.0 72.0 29.78 2.3 396.3 2.0 3,-2 0.4734 6 13.114 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000148572 - NO_TRANSLATION retained_intron ENSMUSG00000052613 Pcdh15 ENSMUST00000177107 ENSMUSP00000135501 TRANSLATION protein_coding - CCDS56713.1 5 1682.0 72.0 29.78 7.0 396.3 2.0 2,-2 0.9834 6 14.68 ALTERNATIVE:1 ENSMUSG00000052613 Pcdh15 ENSMUST00000156999 - NO_TRANSLATION retained_intron ENSMUSG00000052613 Pcdh15 ENSMUST00000151116 ENSMUSP00000119662 TRANSLATION protein_coding - CCDS56711.1 5 1790.0 72.0 30.44 1.3 366.0 2.0 2,-2 0.3993 6 13.5 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000144302 ENSMUSP00000122606 TRANSLATION nonsense_mediated_decay - - 2 326.0 13.0 6.35 0.0 40.2 0.0 3,-2 0.0 3 -2.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000134009 ENSMUSP00000120618 TRANSLATION protein_coding - - 1 650.0 22.0 14.2 0.0 122.0 0.0 3,-2 0.0024 5 0.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000125006 ENSMUSP00000120056 TRANSLATION protein_coding - CCDS56714.1 1 1171.0 65.0 24.2 0.0 361.1 0.0 3,-2 0.0875 6 2.532 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000193174 ENSMUSP00000142238 TRANSLATION protein_coding - - 5 1783.0 72.0 30.44 1.2 366.0 2.0 3,-2 0.2577 6 13.466 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000191709 ENSMUSP00000142313 TRANSLATION protein_coding - - 5 1781.0 72.0 30.11 0.1 396.3 2.0 2,-2 0.3056 6 13.34 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000195531 ENSMUSP00000141920 TRANSLATION protein_coding - - 5 1714.0 72.0 29.78 6.1 396.3 2.0 3,-2 0.7888 6 14.38 ALTERNATIVE:1 ENSMUSG00000052613 Pcdh15 ENSMUST00000136096 ENSMUSP00000121534 TRANSLATION nonsense_mediated_decay - - 2 684.0 28.0 14.15 0.0 118.0 0.0 3,-2 0.003 4 -2.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000125517 ENSMUSP00000115399 TRANSLATION protein_coding - - 1 719.0 17.0 10.28 0.0 40.2 0.0 3,-2 0.0018 4 0.0 MINOR ENSMUSG00000052613 Pcdh15 ENSMUST00000131321 ENSMUSP00000122911 TRANSLATION protein_coding - CCDS56718.1 1 1936.0 72.0 29.78 0.4 396.3 2.0 3,-2 0.4619 6 12.68 MINOR ENSMUSG00000019892 Lrriq1 ENSMUST00000217834 - NO_TRANSLATION retained_intron ENSMUSG00000019892 Lrriq1 ENSMUST00000218841 ENSMUSP00000151651 TRANSLATION protein_coding start - 5 158.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019892 Lrriq1 ENSMUST00000020043 ENSMUSP00000020043 TRANSLATION protein_coding - CCDS48686.1 1 814.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0737 - 0.0 MINOR ENSMUSG00000019892 Lrriq1 ENSMUST00000123364 ENSMUSP00000119783 TRANSLATION protein_coding stop - 1 520.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0044 - -2.0 MINOR ENSMUSG00000019892 Lrriq1 ENSMUST00000166240 ENSMUSP00000131419 TRANSLATION protein_coding - CCDS48687.1 5 1673.0 0.0 4.4 0.0 94.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035754 Wdr18 ENSMUST00000218449 - NO_TRANSLATION retained_intron ENSMUSG00000035754 Wdr18 ENSMUST00000220249 - NO_TRANSLATION retained_intron ENSMUSG00000035754 Wdr18 ENSMUST00000220272 - NO_TRANSLATION retained_intron ENSMUSG00000035754 Wdr18 ENSMUST00000218515 - NO_TRANSLATION retained_intron ENSMUSG00000035754 Wdr18 ENSMUST00000045247 ENSMUSP00000041049 TRANSLATION protein_coding - CCDS24000.1 1 431.0 0.0 3.486 27.0 128.6 0.0 -4,-7 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000038417 Fig4 ENSMUST00000043814 ENSMUSP00000039598 TRANSLATION protein_coding - CCDS23803.1 1 907.0 0.0 8.525 21.9 243.0 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000063334 Krr1 ENSMUST00000075924 - NO_TRANSLATION retained_intron ENSMUSG00000063334 Krr1 ENSMUST00000163048 ENSMUSP00000125746 TRANSLATION protein_coding - CCDS24168.1 1 380.0 0.0 7.0 4.4 0.0 0.0 -4,-5 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000063334 Krr1 ENSMUST00000162678 - NO_TRANSLATION retained_intron ENSMUSG00000063334 Krr1 ENSMUST00000174653 ENSMUSP00000134408 TRANSLATION protein_coding - - 5 323.0 0.0 6.0 0.0 0.0 0.0 -4,-5 0.0197 6 4.002 MINOR ENSMUSG00000045867 Cradd ENSMUST00000053594 ENSMUSP00000050295 TRANSLATION protein_coding - CCDS24135.1 1 199.0 0.0 2.0 24.7 107.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000045867 Cradd ENSMUST00000217809 ENSMUSP00000151735 TRANSLATION protein_coding - CCDS24135.1 1 199.0 0.0 2.0 24.7 107.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000045867 Cradd ENSMUST00000220279 ENSMUSP00000152022 TRANSLATION protein_coding - CCDS24135.1 1 199.0 0.0 2.0 24.7 107.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000045867 Cradd ENSMUST00000218651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045867 Cradd ENSMUST00000218761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045867 Cradd ENSMUST00000220446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064065 Ipcef1 ENSMUST00000154998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064065 Ipcef1 ENSMUST00000086896 ENSMUSP00000084110 TRANSLATION protein_coding - CCDS56689.1 1 242.0 0.0 2.37 0.0 0.0 0.0 -4,-5 0.0051 2 4.002 MINOR ENSMUSG00000064065 Ipcef1 ENSMUST00000170680 ENSMUSP00000128131 TRANSLATION protein_coding - CCDS56689.1 5 242.0 0.0 2.37 0.0 0.0 0.0 -4,-5 0.0051 2 4.002 MINOR ENSMUSG00000064065 Ipcef1 ENSMUST00000145156 ENSMUSP00000114267 TRANSLATION protein_coding stop - 5 258.0 0.0 3.37 0.0 60.8 0.0 -4,-6 0.0132 4 -2.0 MINOR ENSMUSG00000064065 Ipcef1 ENSMUST00000144622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064065 Ipcef1 ENSMUST00000105617 ENSMUSP00000101242 TRANSLATION protein_coding - CCDS56688.1 5 406.0 0.0 3.37 4.8 60.8 0.0 -4,-5 1.0 5 10.0 ALTERNATIVE:1 ENSMUSG00000064065 Ipcef1 ENSMUST00000078070 ENSMUSP00000077215 TRANSLATION protein_coding - CCDS83676.1 1 410.0 0.0 3.37 3.7 60.8 0.0 -4,-5 0.8714 6 9.422 PRINCIPAL:3 ENSMUSG00000064065 Ipcef1 ENSMUST00000151960 ENSMUSP00000118510 TRANSLATION protein_coding stop - 3 98.0 0.0 1.75 0.0 37.4 0.0 -4,-6 0.0008 2 -2.0 MINOR ENSMUSG00000064065 Ipcef1 ENSMUST00000149708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039089 L3mbtl3 ENSMUST00000217699 - NO_TRANSLATION retained_intron ENSMUSG00000039089 L3mbtl3 ENSMUST00000174766 ENSMUSP00000133479 TRANSLATION protein_coding - CCDS23756.1 1 883.0 0.0 10.3 0.0 358.7 0.0 -4,-5 1.0 6 8.0 PRINCIPAL:2 ENSMUSG00000039089 L3mbtl3 ENSMUST00000040219 ENSMUSP00000037619 TRANSLATION protein_coding - CCDS23756.1 5 883.0 0.0 10.3 0.0 358.7 0.0 -4,-5 1.0 6 8.0 PRINCIPAL:2 ENSMUSG00000039089 L3mbtl3 ENSMUST00000105519 ENSMUSP00000101158 TRANSLATION protein_coding - CCDS83689.1 1 858.0 0.0 10.3 0.0 358.7 0.0 -4,-5 0.4125 6 8.0 ALTERNATIVE:2 ENSMUSG00000039089 L3mbtl3 ENSMUST00000218585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039089 L3mbtl3 ENSMUST00000218909 - NO_TRANSLATION retained_intron ENSMUSG00000039089 L3mbtl3 ENSMUST00000218665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020137 Thap2 ENSMUST00000218842 ENSMUSP00000151353 TRANSLATION protein_coding - CCDS24179.1 1 217.0 5.0 1.75 6.0 64.7 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000020137 Thap2 ENSMUST00000218989 ENSMUSP00000151925 TRANSLATION protein_coding - - - 37.0 0.0 0.0 0.0 0.0 0.0 -3,0 0.0004 - 0.0 MINOR ENSMUSG00000020137 Thap2 ENSMUST00000020346 ENSMUSP00000020346 TRANSLATION protein_coding - - 1 49.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0 - 0.0 MINOR ENSMUSG00000001119 Col6a1 ENSMUST00000001147 ENSMUSP00000001147 TRANSLATION protein_coding - CCDS23952.1 1 1025.0 13.0 4.0164 0.0 384.2 0.0 3,-2 1.0 30 18.0 PRINCIPAL:1 ENSMUSG00000001119 Col6a1 ENSMUST00000137599 - NO_TRANSLATION retained_intron ENSMUSG00000020109 Dnajb12 ENSMUST00000142819 ENSMUSP00000118088 TRANSLATION protein_coding - CCDS23867.1 1 376.0 0.0 0.755 17.3 189.4 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:3 ENSMUSG00000020109 Dnajb12 ENSMUST00000020309 ENSMUSP00000020309 TRANSLATION protein_coding - CCDS23867.1 1 376.0 0.0 0.755 17.3 189.4 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:3 ENSMUSG00000020109 Dnajb12 ENSMUST00000146590 ENSMUSP00000122056 TRANSLATION protein_coding - CCDS23867.1 1 376.0 0.0 0.755 17.3 189.4 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:3 ENSMUSG00000020109 Dnajb12 ENSMUST00000147914 ENSMUSP00000116577 TRANSLATION protein_coding - - 1 378.0 0.0 0.755 17.3 189.4 0.0 -4,-5 0.886 12 12.0 ALTERNATIVE:1 ENSMUSG00000020109 Dnajb12 ENSMUST00000131810 ENSMUSP00000116244 TRANSLATION nonsense_mediated_decay - - 1 126.0 0.0 0.08 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000019864 Rtn4ip1 ENSMUST00000214453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019864 Rtn4ip1 ENSMUST00000214220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019864 Rtn4ip1 ENSMUST00000054418 ENSMUSP00000060940 TRANSLATION protein_coding - CCDS23823.1 1 396.0 22.0 8.25 11.4 92.6 0.0 -4,0 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000019864 Rtn4ip1 ENSMUST00000105492 ENSMUSP00000101131 TRANSLATION protein_coding - - 3 172.0 13.0 4.0 0.0 92.6 0.0 -4,-5 0.0054 3 6.0 MINOR ENSMUSG00000037202 Prf1 ENSMUST00000035419 ENSMUSP00000041483 TRANSLATION protein_coding - CCDS23875.1 1 554.0 7.0 2.0 0.0 191.9 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000037202 Prf1 ENSMUST00000219375 ENSMUSP00000151354 TRANSLATION protein_coding - CCDS23875.1 1 554.0 7.0 2.0 0.0 191.9 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000025405 Inhbc ENSMUST00000026472 ENSMUSP00000026472 TRANSLATION protein_coding - CCDS24240.1 1 352.0 0.0 0.532 4.6 100.3 0.0 3,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000057337 Chst3 ENSMUST00000167915 ENSMUSP00000131532 TRANSLATION protein_coding - - 1 472.0 0.0 0.5 3.0 187.0 0.0 -4,-6 0.882 1 13.0 PRINCIPAL:1 ENSMUSG00000057337 Chst3 ENSMUST00000068690 ENSMUSP00000065010 TRANSLATION protein_coding - - 1 472.0 0.0 0.5 3.0 187.0 0.0 -4,-6 0.882 1 13.0 PRINCIPAL:1 ENSMUSG00000035745 Grin3b ENSMUST00000131816 ENSMUSP00000122984 TRANSLATION protein_coding start/stop - 1 399.0 5.0 3.25 0.0 74.8 1.0 -3,-6 0.0022 - -2.0 MINOR ENSMUSG00000035745 Grin3b ENSMUST00000149148 ENSMUSP00000116887 TRANSLATION protein_coding start - 1 542.0 11.0 5.4 0.0 190.6 4.0 -4,-2 0.0551 - -2.0 MINOR ENSMUSG00000035745 Grin3b ENSMUST00000045085 ENSMUSP00000048576 TRANSLATION protein_coding - CCDS24001.1 1 1003.0 11.0 5.9 0.4 190.6 4.0 1,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000020125 Elane ENSMUST00000046091 ENSMUSP00000038925 TRANSLATION protein_coding - CCDS23994.1 1 265.0 13.0 4.0 0.0 201.4 0.0 4,-1 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000034667 Xpot ENSMUST00000218004 ENSMUSP00000151722 TRANSLATION protein_coding - - 5 962.0 0.0 8.2475 25.2 168.4 0.0 -4,-5 1.0 18 12.0 PRINCIPAL:3 ENSMUSG00000034667 Xpot ENSMUST00000219334 ENSMUSP00000151253 TRANSLATION protein_coding start - 3 51.0 0.0 0.738 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034667 Xpot ENSMUST00000039810 ENSMUSP00000043488 TRANSLATION protein_coding - - 5 963.0 0.0 8.2475 25.2 161.6 0.0 -4,-5 0.9687 17 12.0 ALTERNATIVE:1 ENSMUSG00000034667 Xpot ENSMUST00000217865 ENSMUSP00000151828 TRANSLATION protein_coding start/stop - 3 206.0 0.0 2.34 0.0 47.5 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000034667 Xpot ENSMUST00000218973 - NO_TRANSLATION retained_intron ENSMUSG00000040345 Arhgap9 ENSMUST00000219511 ENSMUSP00000151690 TRANSLATION protein_coding - - 1 648.0 3.0 8.46 0.3 236.1 0.0 -4,-7 0.77 6 15.0 PRINCIPAL:1 ENSMUSG00000040345 Arhgap9 ENSMUST00000218656 - NO_TRANSLATION retained_intron ENSMUSG00000040345 Arhgap9 ENSMUST00000069548 ENSMUSP00000066455 TRANSLATION protein_coding - CCDS36079.1 1 473.0 3.0 8.46 0.3 211.5 0.0 -4,-5 0.1995 6 13.524 MINOR ENSMUSG00000040345 Arhgap9 ENSMUST00000219026 ENSMUSP00000151574 TRANSLATION protein_coding - CCDS36079.1 1 473.0 3.0 8.46 0.3 211.5 0.0 -4,-5 0.1995 6 13.524 MINOR ENSMUSG00000075232 Amd1 ENSMUST00000213620 - NO_TRANSLATION retained_intron ENSMUSG00000075232 Amd1 ENSMUST00000238969 ENSMUSP00000159133 TRANSLATION protein_coding - CCDS48544.1 - 334.0 5.0 7.55 0.0 416.4 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000075232 Amd1 ENSMUST00000238953 ENSMUSP00000158947 TRANSLATION protein_coding - - - 463.0 5.0 7.55 0.0 416.4 0.0 -4,-5 0.0721 - -2.0 MINOR ENSMUSG00000075232 Amd1 ENSMUST00000099945 ENSMUSP00000097528 TRANSLATION protein_coding - CCDS48544.1 1 334.0 5.0 7.55 0.0 416.4 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000075232 Amd1 ENSMUST00000216993 - NO_TRANSLATION retained_intron ENSMUSG00000075232 Amd1 ENSMUST00000214698 ENSMUSP00000151015 TRANSLATION protein_coding stop - 3 185.0 4.0 4.0 0.0 248.9 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000020032 Nuak1 ENSMUST00000020220 ENSMUSP00000020220 TRANSLATION protein_coding - CCDS24079.1 1 658.0 20.0 6.35 6.6 256.2 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000020032 Nuak1 ENSMUST00000129355 ENSMUSP00000122927 TRANSLATION protein_coding start/stop - 3 160.0 4.0 3.9 0.0 126.7 0.0 3,-2 0.0004 2 -2.0 MINOR ENSMUSG00000035798 Zdhhc17 ENSMUST00000099285 - NO_TRANSLATION retained_intron ENSMUSG00000035798 Zdhhc17 ENSMUST00000217793 - NO_TRANSLATION retained_intron ENSMUSG00000035798 Zdhhc17 ENSMUST00000217698 - NO_TRANSLATION retained_intron ENSMUSG00000035798 Zdhhc17 ENSMUST00000041723 ENSMUSP00000043279 TRANSLATION protein_coding - CCDS56748.1 1 632.0 2.0 12.93 9.6 225.3 0.0 -4,-5 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000035798 Zdhhc17 ENSMUST00000218981 - NO_TRANSLATION retained_intron ENSMUSG00000035798 Zdhhc17 ENSMUST00000218972 - NO_TRANSLATION retained_intron ENSMUSG00000035798 Zdhhc17 ENSMUST00000220247 ENSMUSP00000151754 TRANSLATION nonsense_mediated_decay start - 1 192.0 0.0 4.3 0.0 85.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035798 Zdhhc17 ENSMUST00000218895 ENSMUSP00000151491 TRANSLATION nonsense_mediated_decay start - 3 64.0 0.0 1.698 0.0 27.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035798 Zdhhc17 ENSMUST00000217982 - NO_TRANSLATION retained_intron ENSMUSG00000035798 Zdhhc17 ENSMUST00000219307 ENSMUSP00000151330 TRANSLATION protein_coding stop - 3 82.0 0.0 2.25 0.0 45.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019893 Ros1 ENSMUST00000219173 ENSMUSP00000151615 TRANSLATION nonsense_mediated_decay - - 5 1855.0 0.0 4.443 0.0 99.8 0.0 0,-4 0.0331 1 -2.0 MINOR ENSMUSG00000019893 Ros1 ENSMUST00000020045 ENSMUSP00000020045 TRANSLATION protein_coding - CCDS23838.1 1 2340.0 0.0 11.358 8.5 418.1 0.0 0,-4 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000019893 Ros1 ENSMUST00000218452 ENSMUSP00000151720 TRANSLATION protein_coding - - 5 2319.0 0.0 11.358 0.1 418.1 0.0 0,-4 0.3305 1 12.0 MINOR ENSMUSG00000019893 Ros1 ENSMUST00000219692 ENSMUSP00000151932 TRANSLATION nonsense_mediated_decay - - 5 544.0 0.0 2.625 0.0 73.9 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000038594 Cep85l ENSMUST00000219673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038594 Cep85l ENSMUST00000220443 ENSMUSP00000151909 TRANSLATION protein_coding - CCDS56701.1 5 806.0 0.0 0.0 5.9 0.0 0.0 -4,-7 1.0 5 2.0 PRINCIPAL:2 ENSMUSG00000038594 Cep85l ENSMUST00000220376 ENSMUSP00000152032 TRANSLATION protein_coding - - 5 704.0 0.0 0.0 5.1 0.0 0.0 -4,-7 0.7481 5 1.674 ALTERNATIVE:1 ENSMUSG00000038594 Cep85l ENSMUST00000218596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038594 Cep85l ENSMUST00000095691 ENSMUSP00000093356 TRANSLATION protein_coding - - 5 704.0 0.0 0.0 5.1 0.0 0.0 -4,-7 0.7481 5 1.674 ALTERNATIVE:1 ENSMUSG00000001211 Agpat3 ENSMUST00000105389 ENSMUSP00000101028 TRANSLATION protein_coding - CCDS23963.1 1 376.0 0.0 8.58 36.0 141.8 5.0 -1,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000001211 Agpat3 ENSMUST00000138035 ENSMUSP00000121052 TRANSLATION protein_coding stop - 2 56.0 0.0 1.0 0.0 0.0 3.0 -1,-5 0.0002 - -2.0 MINOR ENSMUSG00000001211 Agpat3 ENSMUST00000150828 ENSMUSP00000114885 TRANSLATION protein_coding stop - 3 128.0 0.0 3.0 0.0 0.0 3.0 -1,-5 0.0017 1 -2.0 MINOR ENSMUSG00000001211 Agpat3 ENSMUST00000105388 ENSMUSP00000101027 TRANSLATION protein_coding - CCDS23963.1 5 376.0 0.0 8.58 36.0 141.8 5.0 -1,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000001211 Agpat3 ENSMUST00000105387 ENSMUSP00000101026 TRANSLATION protein_coding - CCDS23963.1 1 376.0 0.0 8.58 36.0 141.8 5.0 -1,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000001211 Agpat3 ENSMUST00000146296 - NO_TRANSLATION retained_intron ENSMUSG00000001211 Agpat3 ENSMUST00000146899 ENSMUSP00000114657 TRANSLATION protein_coding stop - 3 53.0 0.0 1.0 0.0 0.0 3.0 -1,-5 0.0002 - -2.0 MINOR ENSMUSG00000001211 Agpat3 ENSMUST00000219907 - NO_TRANSLATION retained_intron ENSMUSG00000001211 Agpat3 ENSMUST00000139282 ENSMUSP00000119713 TRANSLATION protein_coding stop - 3 144.0 0.0 3.33 0.0 23.3 3.0 -1,-5 0.0002 1 -2.0 MINOR ENSMUSG00000001211 Agpat3 ENSMUST00000105390 ENSMUSP00000101029 TRANSLATION protein_coding - CCDS23963.1 5 376.0 0.0 8.58 36.0 141.8 5.0 -1,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000001211 Agpat3 ENSMUST00000166360 ENSMUSP00000132954 TRANSLATION protein_coding - CCDS23963.1 1 376.0 0.0 8.58 36.0 141.8 5.0 -1,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000001211 Agpat3 ENSMUST00000219932 ENSMUSP00000151528 TRANSLATION nonsense_mediated_decay start - 3 119.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000001211 Agpat3 ENSMUST00000001240 ENSMUSP00000001240 TRANSLATION protein_coding - CCDS23963.1 1 376.0 0.0 8.58 36.0 141.8 5.0 -1,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000040521 Tsfm ENSMUST00000120547 ENSMUSP00000113446 TRANSLATION protein_coding - - 1 193.0 0.0 4.0 0.0 0.0 0.0 -2,2 0.0862 6 4.002 MINOR ENSMUSG00000040521 Tsfm ENSMUST00000138556 - NO_TRANSLATION retained_intron ENSMUSG00000040521 Tsfm ENSMUST00000145476 - NO_TRANSLATION retained_intron ENSMUSG00000040521 Tsfm ENSMUST00000040560 ENSMUSP00000042134 TRANSLATION protein_coding - CCDS24222.1 1 324.0 0.0 5.0 0.4 0.0 0.0 -2,2 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000040521 Tsfm ENSMUST00000134917 - NO_TRANSLATION retained_intron ENSMUSG00000040521 Tsfm ENSMUST00000140564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040521 Tsfm ENSMUST00000152054 ENSMUSP00000122669 TRANSLATION protein_coding - - 3 206.0 0.0 2.0 0.0 0.0 0.0 -2,2 0.0283 4 0.0 MINOR ENSMUSG00000020310 Madcam1 ENSMUST00000217748 ENSMUSP00000151928 TRANSLATION protein_coding - - 1 261.0 0.0 2.0 0.0 178.9 0.0 3,-2 0.6728 2 8.0 PRINCIPAL:4 ENSMUSG00000020310 Madcam1 ENSMUST00000020554 ENSMUSP00000020554 TRANSLATION protein_coding - CCDS23981.1 1 405.0 0.0 2.0 0.0 181.0 0.0 3,-2 0.6296 2 8.0 ALTERNATIVE:2 ENSMUSG00000035640 Cbarp ENSMUST00000149242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035640 Cbarp ENSMUST00000128465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035640 Cbarp ENSMUST00000146180 - NO_TRANSLATION retained_intron ENSMUSG00000035640 Cbarp ENSMUST00000128488 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035640 Cbarp ENSMUST00000136260 - NO_TRANSLATION retained_intron ENSMUSG00000035640 Cbarp ENSMUST00000170219 ENSMUSP00000131487 TRANSLATION protein_coding - CCDS56734.1 5 698.0 0.0 0.0 0.4 0.0 1.0 -4,-5 0.9202 13 0.0 PRINCIPAL:1 ENSMUSG00000035640 Cbarp ENSMUST00000127515 - NO_TRANSLATION retained_intron ENSMUSG00000035640 Cbarp ENSMUST00000123967 ENSMUSP00000125962 TRANSLATION nonsense_mediated_decay - - 3 107.0 0.0 0.0 0.0 0.0 0.0 -3,-4 0.016 - -2.0 MINOR ENSMUSG00000035640 Cbarp ENSMUST00000138776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035640 Cbarp ENSMUST00000142853 ENSMUSP00000115009 TRANSLATION protein_coding stop - 2 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0579 - -2.0 MINOR ENSMUSG00000035640 Cbarp ENSMUST00000132523 ENSMUSP00000128980 TRANSLATION nonsense_mediated_decay - - 5 112.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0342 - -2.0 MINOR ENSMUSG00000035640 Cbarp ENSMUST00000105369 ENSMUSP00000101008 TRANSLATION protein_coding - CCDS56734.1 5 698.0 0.0 0.0 0.4 0.0 1.0 -4,-5 0.9202 13 0.0 PRINCIPAL:1 ENSMUSG00000035640 Cbarp ENSMUST00000147778 ENSMUSP00000130389 TRANSLATION nonsense_mediated_decay - - 5 112.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0342 - -2.0 MINOR ENSMUSG00000035640 Cbarp ENSMUST00000132317 - NO_TRANSLATION retained_intron ENSMUSG00000019863 Qrsl1 ENSMUST00000020012 ENSMUSP00000020012 TRANSLATION protein_coding - CCDS35894.1 1 525.0 16.0 9.73 10.7 425.9 0.0 -4,-7 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000019863 Qrsl1 ENSMUST00000146937 - NO_TRANSLATION retained_intron ENSMUSG00000019863 Qrsl1 ENSMUST00000217541 - NO_TRANSLATION retained_intron ENSMUSG00000019863 Qrsl1 ENSMUST00000216786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019863 Qrsl1 ENSMUST00000154405 - NO_TRANSLATION retained_intron ENSMUSG00000025409 Mbd6 ENSMUST00000156208 ENSMUSP00000114590 TRANSLATION protein_coding stop - 3 130.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0315 1 -2.0 MINOR ENSMUSG00000025409 Mbd6 ENSMUST00000172567 ENSMUSP00000134527 TRANSLATION protein_coding start/stop - 2 208.0 0.0 0.0 0.0 0.0 0.0 -2,-3 0.0306 - -2.0 MINOR ENSMUSG00000025409 Mbd6 ENSMUST00000026476 ENSMUSP00000026476 TRANSLATION protein_coding - CCDS24235.1 5 1005.0 0.0 2.0 5.1 0.0 0.0 -4,-5 0.9838 3 8.0 ALTERNATIVE:1 ENSMUSG00000025409 Mbd6 ENSMUST00000136169 ENSMUSP00000122504 TRANSLATION nonsense_mediated_decay start - 1 111.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0158 1 -2.0 MINOR ENSMUSG00000025409 Mbd6 ENSMUST00000154851 ENSMUSP00000133835 TRANSLATION protein_coding start - 3 128.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0092 1 -2.0 MINOR ENSMUSG00000025409 Mbd6 ENSMUST00000126243 ENSMUSP00000115238 TRANSLATION nonsense_mediated_decay start - 5 613.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0496 1 -2.0 MINOR ENSMUSG00000025409 Mbd6 ENSMUST00000119078 ENSMUSP00000112805 TRANSLATION protein_coding - CCDS83762.1 1 1003.0 0.0 2.0 5.0 0.0 0.0 -4,-5 1.0 3 7.952 PRINCIPAL:4 ENSMUSG00000107662 Or6c203 ENSMUST00000169800 ENSMUSP00000132389 TRANSLATION protein_coding - CCDS24309.1 - 311.0 0.0 1.0 11.5 160.7 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000107662 Or6c203 ENSMUST00000214672 ENSMUSP00000148854 TRANSLATION protein_coding - CCDS24309.1 5 311.0 0.0 1.0 11.5 160.7 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036676 Tmtc3 ENSMUST00000099318 ENSMUSP00000096921 TRANSLATION protein_coding - CCDS24150.1 1 658.0 0.0 8.445 0.0 222.0 14.0 -4,-7 0.2402 4 9.168 MINOR ENSMUSG00000036676 Tmtc3 ENSMUST00000058154 ENSMUSP00000061470 TRANSLATION protein_coding - CCDS48684.1 1 920.0 0.0 8.275 0.1 269.2 14.0 -4,-7 1.0 11 11.658 PRINCIPAL:1 ENSMUSG00000036676 Tmtc3 ENSMUST00000134477 ENSMUSP00000120025 TRANSLATION protein_coding stop - 5 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0209 - -2.0 MINOR ENSMUSG00000036676 Tmtc3 ENSMUST00000128009 ENSMUSP00000121473 TRANSLATION protein_coding stop - 2 113.0 0.0 1.8 0.0 0.0 2.0 -4,-7 0.0009 - -2.0 MINOR ENSMUSG00000036676 Tmtc3 ENSMUST00000130883 - NO_TRANSLATION retained_intron ENSMUSG00000039810 Zc3h10 ENSMUST00000135226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039810 Zc3h10 ENSMUST00000152539 ENSMUSP00000151278 TRANSLATION protein_coding stop - 2 135.0 8.0 0.266 0.0 36.2 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000039810 Zc3h10 ENSMUST00000133458 ENSMUSP00000151312 TRANSLATION protein_coding stop - 5 49.0 1.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039810 Zc3h10 ENSMUST00000040572 ENSMUSP00000042727 TRANSLATION protein_coding - CCDS24281.1 1 435.0 12.0 0.426 11.0 64.1 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000003068 Stk11 ENSMUST00000128992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003068 Stk11 ENSMUST00000105371 ENSMUSP00000101010 TRANSLATION nonsense_mediated_decay - - 1 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003068 Stk11 ENSMUST00000105370 ENSMUSP00000101009 TRANSLATION protein_coding - - 1 310.0 7.0 6.08 0.0 132.0 0.0 -4,-5 0.0009 7 3.462 MINOR ENSMUSG00000003068 Stk11 ENSMUST00000152592 ENSMUSP00000118853 TRANSLATION protein_coding start - 3 164.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000003068 Stk11 ENSMUST00000144119 - NO_TRANSLATION retained_intron ENSMUSG00000003068 Stk11 ENSMUST00000144108 - NO_TRANSLATION retained_intron ENSMUSG00000003068 Stk11 ENSMUST00000129235 - NO_TRANSLATION retained_intron ENSMUSG00000003068 Stk11 ENSMUST00000144883 ENSMUSP00000114195 TRANSLATION nonsense_mediated_decay - CCDS78854.1 1 412.0 17.0 8.41 0.1 196.6 0.0 -4,-5 0.1046 8 -2.0 MINOR ENSMUSG00000003068 Stk11 ENSMUST00000003152 ENSMUSP00000003152 TRANSLATION protein_coding - CCDS35974.1 1 436.0 17.0 8.41 16.3 196.6 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000049641 Vgll2 ENSMUST00000163017 ENSMUSP00000124091 TRANSLATION protein_coding - CCDS23837.1 1 322.0 0.0 0.5 1.1 72.7 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056853 Or6c8b ENSMUST00000216460 ENSMUSP00000150725 TRANSLATION protein_coding - CCDS48731.1 5 309.0 0.0 1.0 12.5 167.4 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056853 Or6c8b ENSMUST00000071559 ENSMUSP00000071490 TRANSLATION protein_coding - CCDS48731.1 - 309.0 0.0 1.0 12.5 167.4 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035916 Ptprq ENSMUST00000050702 ENSMUSP00000058572 TRANSLATION protein_coding - CCDS36051.1 2 2300.0 4.0 7.164 5.5 700.5 0.0 3,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000035916 Ptprq ENSMUST00000218399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056073 Grik2 ENSMUST00000218823 ENSMUSP00000151921 TRANSLATION protein_coding - CCDS48554.1 1 908.0 10.0 14.5 28.9 613.5 8.0 2,-2 1.0 12 21.868 PRINCIPAL:1 ENSMUSG00000056073 Grik2 ENSMUST00000217673 - NO_TRANSLATION retained_intron ENSMUSG00000056073 Grik2 ENSMUST00000105484 ENSMUSP00000101124 TRANSLATION protein_coding - CCDS48554.1 1 908.0 10.0 14.5 28.9 613.5 8.0 2,-2 1.0 12 21.868 PRINCIPAL:1 ENSMUSG00000056073 Grik2 ENSMUST00000218669 ENSMUSP00000152029 TRANSLATION protein_coding start/stop - 5 179.0 0.0 4.75 0.0 57.8 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000056073 Grik2 ENSMUST00000219051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056073 Grik2 ENSMUST00000220263 ENSMUSP00000151372 TRANSLATION protein_coding - - 1 338.0 0.0 5.35 0.0 207.2 0.0 2,-2 0.0008 6 0.0 MINOR ENSMUSG00000056073 Grik2 ENSMUST00000220330 - NO_TRANSLATION retained_intron ENSMUSG00000056073 Grik2 ENSMUST00000218598 ENSMUSP00000151389 TRANSLATION protein_coding - - 5 893.0 10.0 14.566 3.2 613.5 8.0 2,-2 0.3914 11 18.316 MINOR ENSMUSG00000056073 Grik2 ENSMUST00000218441 ENSMUSP00000151671 TRANSLATION protein_coding - CCDS23830.1 1 869.0 10.0 14.5 8.0 613.5 8.0 2,-2 0.5441 11 18.872 MINOR ENSMUSG00000056073 Grik2 ENSMUST00000079751 ENSMUSP00000078687 TRANSLATION protein_coding - CCDS23830.1 2 869.0 10.0 14.5 8.0 613.5 8.0 2,-2 0.5441 11 18.872 MINOR ENSMUSG00000056073 Grik2 ENSMUST00000219509 ENSMUSP00000151982 TRANSLATION protein_coding start - 5 309.0 5.0 3.55 0.0 188.5 8.0 0,-4 0.0061 1 -2.0 MINOR ENSMUSG00000063173 Or6c215 ENSMUST00000215058 ENSMUSP00000148915 TRANSLATION protein_coding - CCDS24338.1 5 319.0 0.0 1.0 5.6 174.3 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063173 Or6c215 ENSMUST00000217571 ENSMUSP00000149970 TRANSLATION protein_coding - CCDS24338.1 5 319.0 0.0 1.0 5.6 174.3 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063173 Or6c215 ENSMUST00000216283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063173 Or6c215 ENSMUST00000076437 ENSMUSP00000075768 TRANSLATION protein_coding - CCDS24338.1 - 319.0 0.0 1.0 5.6 174.3 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049422 Chchd10 ENSMUST00000058906 ENSMUSP00000059575 TRANSLATION protein_coding - CCDS23938.1 1 138.0 0.0 1.0 7.6 0.0 0.0 -3,1 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000049422 Chchd10 ENSMUST00000219839 ENSMUSP00000151675 TRANSLATION protein_coding - CCDS23938.1 1 138.0 0.0 1.0 7.6 0.0 0.0 -3,1 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000049422 Chchd10 ENSMUST00000219435 - NO_TRANSLATION retained_intron ENSMUSG00000063374 Or10p21 ENSMUST00000077460 ENSMUSP00000076671 TRANSLATION protein_coding - CCDS24303.1 - 309.0 0.0 1.0 6.3 156.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058298 Mcm9 ENSMUST00000237608 ENSMUSP00000157761 TRANSLATION protein_coding - - - 1134.0 14.0 6.12 0.0 426.6 0.0 -4,-5 0.2714 5 14.0 ALTERNATIVE:2 ENSMUSG00000058298 Mcm9 ENSMUST00000220007 ENSMUSP00000151956 TRANSLATION protein_coding - - 1 552.0 0.0 0.45 0.0 0.0 0.0 -4,-6 0.0014 4 0.0 MINOR ENSMUSG00000058298 Mcm9 ENSMUST00000218549 ENSMUSP00000151893 TRANSLATION protein_coding - - 1 414.0 13.0 3.645 0.0 148.9 0.0 -4,-5 0.0007 1 6.384 MINOR ENSMUSG00000058298 Mcm9 ENSMUST00000075540 ENSMUSP00000074978 TRANSLATION protein_coding - CCDS23846.1 2 1290.0 14.0 6.12 0.0 426.6 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:2 ENSMUSG00000058298 Mcm9 ENSMUST00000219547 ENSMUSP00000151573 TRANSLATION protein_coding - - 1 552.0 0.0 0.45 0.0 0.0 0.0 -4,-6 0.0014 4 0.0 MINOR ENSMUSG00000058298 Mcm9 ENSMUST00000220260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058298 Mcm9 ENSMUST00000219841 ENSMUSP00000151878 TRANSLATION protein_coding start - 5 98.0 10.0 1.6 0.0 83.6 0.0 -2,-4 0.0 - -2.0 MINOR ENSMUSG00000058298 Mcm9 ENSMUST00000219838 ENSMUSP00000151639 TRANSLATION protein_coding - - 5 386.0 13.0 3.27 2.6 165.5 0.0 -4,-5 0.2304 1 8.634 MINOR ENSMUSG00000020037 Rfx4 ENSMUST00000095388 ENSMUSP00000093035 TRANSLATION protein_coding - CCDS24083.1 1 641.0 0.0 0.3 10.3 0.0 0.0 -4,-5 0.3066 1 2.232 MINOR ENSMUSG00000020037 Rfx4 ENSMUST00000020226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020037 Rfx4 ENSMUST00000165868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020037 Rfx4 ENSMUST00000166696 ENSMUSP00000128690 TRANSLATION protein_coding - - 1 592.0 0.0 0.0 2.0 0.0 0.0 -4,-6 0.0634 1 0.152 MINOR ENSMUSG00000020037 Rfx4 ENSMUST00000060397 ENSMUSP00000051107 TRANSLATION protein_coding - CCDS24082.1 1 735.0 0.0 2.2 27.3 117.2 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000020037 Rfx4 ENSMUST00000173479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019909 Fam162b ENSMUST00000020064 ENSMUSP00000020064 TRANSLATION protein_coding - CCDS48557.1 1 157.0 0.0 1.6 2.9 178.3 0.0 -3,0 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000034602 Mon2 ENSMUST00000222536 - NO_TRANSLATION retained_intron ENSMUSG00000034602 Mon2 ENSMUST00000219241 - NO_TRANSLATION retained_intron ENSMUSG00000034602 Mon2 ENSMUST00000170935 ENSMUSP00000131052 TRANSLATION protein_coding - CCDS48708.1 1 1709.0 0.0 0.632 15.5 1820.6 0.0 -4,-5 0.9782 37 11.516 ALTERNATIVE:1 ENSMUSG00000034602 Mon2 ENSMUST00000037557 ENSMUSP00000037568 TRANSLATION protein_coding - CCDS24216.1 1 1708.0 0.0 0.632 17.5 1820.6 0.0 -4,-5 1.0 37 12.0 PRINCIPAL:4 ENSMUSG00000034602 Mon2 ENSMUST00000218735 - NO_TRANSLATION retained_intron ENSMUSG00000034602 Mon2 ENSMUST00000220201 - NO_TRANSLATION retained_intron ENSMUSG00000034602 Mon2 ENSMUST00000219290 - NO_TRANSLATION retained_intron ENSMUSG00000034602 Mon2 ENSMUST00000219515 - NO_TRANSLATION retained_intron ENSMUSG00000034602 Mon2 ENSMUST00000073792 ENSMUSP00000073462 TRANSLATION protein_coding - CCDS48707.1 5 1715.0 0.0 0.632 17.5 1822.6 0.0 -4,-5 0.9743 36 12.0 ALTERNATIVE:1 ENSMUSG00000034602 Mon2 ENSMUST00000218253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034602 Mon2 ENSMUST00000219001 - NO_TRANSLATION retained_intron ENSMUSG00000034602 Mon2 ENSMUST00000219203 ENSMUSP00000151951 TRANSLATION protein_coding - - 1 436.0 0.0 0.632 0.0 423.5 0.0 -4,-5 0.0347 10 7.2 MINOR ENSMUSG00000112216 Cdc5lrt1 ENSMUST00000219147 ENSMUSP00000151792 TRANSLATION protein_coding - - - 802.0 0.0 0.6 30.9 346.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000070601 Vmn2r84 ENSMUST00000232731 ENSMUSP00000156915 TRANSLATION nonsense_mediated_decay - - - 83.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0028 - -2.0 MINOR ENSMUSG00000070601 Vmn2r84 ENSMUST00000233146 ENSMUSP00000156942 TRANSLATION protein_coding - - - 792.0 4.0 2.806 0.0 382.6 7.0 1,-3 0.0807 - 11.202 ALTERNATIVE:2 ENSMUSG00000070601 Vmn2r84 ENSMUST00000233031 - NO_TRANSLATION retained_intron ENSMUSG00000070601 Vmn2r84 ENSMUST00000094502 ENSMUSP00000092079 TRANSLATION protein_coding - CCDS36093.1 5 849.0 4.0 3.206 0.4 385.7 7.0 1,-3 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000034902 Pip5k1c ENSMUST00000105327 ENSMUSP00000100964 TRANSLATION protein_coding - CCDS35994.1 1 661.0 4.0 5.55 5.5 312.7 0.0 -4,-5 1.0 15 14.0 PRINCIPAL:4 ENSMUSG00000034902 Pip5k1c ENSMUST00000163075 ENSMUSP00000124155 TRANSLATION protein_coding - CCDS48643.1 1 635.0 4.0 5.55 5.4 312.7 0.0 -4,-5 0.8981 15 13.956 ALTERNATIVE:1 ENSMUSG00000034902 Pip5k1c ENSMUST00000159636 - NO_TRANSLATION retained_intron ENSMUSG00000034902 Pip5k1c ENSMUST00000161586 ENSMUSP00000124612 TRANSLATION nonsense_mediated_decay start - 5 133.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000034902 Pip5k1c ENSMUST00000159895 - NO_TRANSLATION retained_intron ENSMUSG00000034902 Pip5k1c ENSMUST00000045469 ENSMUSP00000038225 TRANSLATION protein_coding - CCDS78865.1 1 687.0 4.0 5.55 3.7 312.7 0.0 -4,-5 0.7451 17 13.2 ALTERNATIVE:2 ENSMUSG00000034902 Pip5k1c ENSMUST00000161869 ENSMUSP00000124235 TRANSLATION nonsense_mediated_decay start - 3 73.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034902 Pip5k1c ENSMUST00000160291 ENSMUSP00000125645 TRANSLATION nonsense_mediated_decay - - 5 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034902 Pip5k1c ENSMUST00000161854 ENSMUSP00000124004 TRANSLATION nonsense_mediated_decay - - 1 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034902 Pip5k1c ENSMUST00000161719 ENSMUSP00000125461 TRANSLATION protein_coding start/stop - 2 216.0 2.0 1.05 0.0 107.2 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000003072 Atp5f1d ENSMUST00000150347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003072 Atp5f1d ENSMUST00000003156 ENSMUSP00000003156 TRANSLATION protein_coding - CCDS24010.1 1 168.0 0.0 3.5 9.4 0.0 0.0 -4,0 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000003072 Atp5f1d ENSMUST00000105366 ENSMUSP00000101005 TRANSLATION protein_coding - CCDS83726.1 2 121.0 0.0 1.65 0.0 0.0 0.0 -4,0 0.0841 - 2.298 MINOR ENSMUSG00000003072 Atp5f1d ENSMUST00000105367 ENSMUSP00000101006 TRANSLATION protein_coding - CCDS24010.1 5 168.0 0.0 3.5 9.4 0.0 0.0 -4,0 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000056379 Taar1 ENSMUST00000051532 ENSMUSP00000049527 TRANSLATION protein_coding - CCDS23735.1 - 332.0 0.0 0.8 12.8 203.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037868 Egr2 ENSMUST00000127820 ENSMUSP00000116799 TRANSLATION protein_coding - - 5 412.0 12.0 0.8 2.1 156.4 0.0 -4,-5 0.3462 1 18.344 MINOR ENSMUSG00000037868 Egr2 ENSMUST00000146986 ENSMUSP00000118941 TRANSLATION protein_coding stop - 2 72.0 0.0 0.0 0.0 28.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037868 Egr2 ENSMUST00000145936 ENSMUSP00000115709 TRANSLATION protein_coding stop - 3 281.0 0.0 0.0 0.0 89.4 0.0 -4,-7 0.0009 - -2.0 MINOR ENSMUSG00000037868 Egr2 ENSMUST00000048289 ENSMUSP00000041053 TRANSLATION protein_coding - CCDS35927.2 1 470.0 12.0 0.8 0.0 156.4 0.0 -4,-6 0.1754 1 18.0 MINOR ENSMUSG00000037868 Egr2 ENSMUST00000105438 ENSMUSP00000101078 TRANSLATION protein_coding - CCDS83706.1 1 420.0 12.0 0.8 7.4 156.4 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000037868 Egr2 ENSMUST00000145754 ENSMUSP00000116621 TRANSLATION protein_coding stop - 2 236.0 0.0 0.0 0.0 89.4 0.0 -4,-7 0.0004 - -2.0 MINOR ENSMUSG00000037868 Egr2 ENSMUST00000130933 ENSMUSP00000116502 TRANSLATION protein_coding stop - 2 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039485 Tspyl4 ENSMUST00000047935 ENSMUSP00000036360 TRANSLATION protein_coding - CCDS23778.1 - 406.0 0.0 0.8 2.3 73.7 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000039485 Tspyl4 ENSMUST00000213791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015755 Tab2 ENSMUST00000142007 - NO_TRANSLATION retained_intron ENSMUSG00000015755 Tab2 ENSMUST00000146444 ENSMUSP00000121266 TRANSLATION protein_coding - CCDS23691.1 5 693.0 4.0 3.0 15.8 36.4 0.0 -4,-5 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000015755 Tab2 ENSMUST00000147938 ENSMUSP00000119515 TRANSLATION protein_coding stop - 5 553.0 0.0 2.0 0.0 36.4 0.0 -4,-5 0.0161 9 -2.0 MINOR ENSMUSG00000015755 Tab2 ENSMUST00000130322 ENSMUSP00000122559 TRANSLATION protein_coding stop - 1 385.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0011 7 -2.0 MINOR ENSMUSG00000015755 Tab2 ENSMUST00000143848 - NO_TRANSLATION retained_intron ENSMUSG00000035011 Zbtb7a ENSMUST00000119606 ENSMUSP00000113612 TRANSLATION protein_coding - CCDS35991.1 1 569.0 15.0 2.4 0.4 162.0 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000035011 Zbtb7a ENSMUST00000125261 ENSMUSP00000114470 TRANSLATION protein_coding stop - 2 174.0 0.0 1.8 0.0 115.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000035011 Zbtb7a ENSMUST00000121840 ENSMUSP00000113787 TRANSLATION protein_coding - - 1 415.0 6.0 1.9 0.7 115.2 0.0 -4,-5 0.0 4 7.944 MINOR ENSMUSG00000035011 Zbtb7a ENSMUST00000117956 ENSMUSP00000113428 TRANSLATION protein_coding - CCDS35991.1 1 569.0 15.0 2.4 0.4 162.0 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000035011 Zbtb7a ENSMUST00000048128 ENSMUSP00000047333 TRANSLATION protein_coding - CCDS35991.1 1 569.0 15.0 2.4 0.4 162.0 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000035011 Zbtb7a ENSMUST00000146895 ENSMUSP00000120987 TRANSLATION protein_coding stop - 3 44.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000051067 Lingo3 ENSMUST00000053986 ENSMUSP00000054960 TRANSLATION protein_coding - CCDS24035.1 1 589.0 0.0 1.6 7.8 198.1 0.0 3,-2 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000051067 Lingo3 ENSMUST00000219924 ENSMUSP00000151329 TRANSLATION protein_coding stop - 3 34.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000056758 Hmga2 ENSMUST00000159310 - NO_TRANSLATION retained_intron ENSMUSG00000056758 Hmga2 ENSMUST00000159699 ENSMUSP00000123998 TRANSLATION protein_coding - CCDS83758.1 1 129.0 0.0 0.0 0.0 40.9 0.0 -4,-6 0.1001 2 6.0 MINOR ENSMUSG00000056758 Hmga2 ENSMUST00000072777 ENSMUSP00000072556 TRANSLATION protein_coding - CCDS36073.1 1 108.0 0.0 0.0 18.2 40.9 0.0 -4,-6 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000061367 Or6c202 ENSMUST00000078914 ENSMUSP00000077948 TRANSLATION protein_coding - CCDS24308.1 - 317.0 0.0 1.0 7.9 161.5 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061367 Or6c202 ENSMUST00000214271 ENSMUSP00000151108 TRANSLATION protein_coding - CCDS24308.1 5 317.0 0.0 1.0 7.9 161.5 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025364 Pa2g4 ENSMUST00000147068 - NO_TRANSLATION retained_intron ENSMUSG00000025364 Pa2g4 ENSMUST00000131728 ENSMUSP00000114434 TRANSLATION protein_coding - CCDS24282.1 1 394.0 3.0 9.75 29.0 90.1 0.0 -4,-5 1.0 21 19.0 PRINCIPAL:1 ENSMUSG00000025364 Pa2g4 ENSMUST00000026425 ENSMUSP00000026425 TRANSLATION protein_coding - CCDS24282.1 1 394.0 3.0 9.75 29.0 90.1 0.0 -4,-5 1.0 21 19.0 PRINCIPAL:1 ENSMUSG00000020213 Glipr1l1 ENSMUST00000073617 ENSMUSP00000073302 TRANSLATION protein_coding - CCDS48691.1 1 236.0 2.0 4.05 0.3 97.5 0.0 3,-1 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000019797 Mtres1 ENSMUST00000152926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019797 Mtres1 ENSMUST00000126463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019797 Mtres1 ENSMUST00000214198 - NO_TRANSLATION TEC ENSMUSG00000019797 Mtres1 ENSMUST00000147196 ENSMUSP00000119053 TRANSLATION protein_coding - CCDS23820.1 1 240.0 0.0 1.95 11.1 0.0 0.0 -4,-2 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000020135 Apc2 ENSMUST00000020349 ENSMUSP00000020349 TRANSLATION protein_coding - CCDS24016.1 5 2274.0 0.0 8.88 0.0 804.4 0.0 -4,-5 0.8779 22 8.0 ALTERNATIVE:2 ENSMUSG00000020135 Apc2 ENSMUST00000140658 - NO_TRANSLATION retained_intron ENSMUSG00000020135 Apc2 ENSMUST00000154212 ENSMUSP00000118171 TRANSLATION protein_coding stop - 2 93.0 0.0 1.4 0.0 112.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020135 Apc2 ENSMUST00000105359 ENSMUSP00000100996 TRANSLATION protein_coding - - 5 2303.0 0.0 8.88 0.0 804.4 0.0 -2,-3 1.0 22 8.0 PRINCIPAL:4 ENSMUSG00000020135 Apc2 ENSMUST00000140828 ENSMUSP00000121324 TRANSLATION protein_coding stop - 1 125.0 0.0 1.4 0.0 112.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020135 Apc2 ENSMUST00000138909 ENSMUSP00000116795 TRANSLATION protein_coding stop - 3 123.0 0.0 1.4 0.0 112.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000050473 Slc35d3 ENSMUST00000059805 ENSMUSP00000060589 TRANSLATION protein_coding - CCDS23719.1 1 422.0 0.0 2.0 9.8 0.0 0.0 -2,0 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000020003 Pex7 ENSMUST00000020182 ENSMUSP00000020182 TRANSLATION protein_coding - CCDS23720.1 1 318.0 0.0 8.5 2.9 83.1 0.0 -4,-1 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000020003 Pex7 ENSMUST00000166511 ENSMUSP00000132996 TRANSLATION protein_coding - CCDS48510.1 1 292.0 0.0 7.75 0.3 56.8 0.0 -4,-1 0.0236 3 8.604 MINOR ENSMUSG00000020003 Pex7 ENSMUST00000214951 - NO_TRANSLATION retained_intron ENSMUSG00000020003 Pex7 ENSMUST00000125942 - NO_TRANSLATION retained_intron ENSMUSG00000020184 Mdm2 ENSMUST00000147823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020184 Mdm2 ENSMUST00000137102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020184 Mdm2 ENSMUST00000131627 - NO_TRANSLATION retained_intron ENSMUSG00000020184 Mdm2 ENSMUST00000132277 - NO_TRANSLATION retained_intron ENSMUSG00000020184 Mdm2 ENSMUST00000020408 ENSMUSP00000020408 TRANSLATION protein_coding - CCDS24194.1 1 489.0 11.0 4.35 0.1 116.6 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000020184 Mdm2 ENSMUST00000126022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020184 Mdm2 ENSMUST00000105263 ENSMUSP00000100898 TRANSLATION protein_coding - CCDS70110.1 5 440.0 11.0 2.85 0.1 106.4 0.0 -4,-5 0.0271 1 14.388 MINOR ENSMUSG00000020184 Mdm2 ENSMUST00000155285 ENSMUSP00000137039 TRANSLATION nonsense_mediated_decay - - 1 162.0 0.0 3.3 0.0 37.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020184 Mdm2 ENSMUST00000151725 - NO_TRANSLATION retained_intron ENSMUSG00000035215 Lsm7 ENSMUST00000035775 ENSMUSP00000044993 TRANSLATION protein_coding - CCDS35987.1 1 103.0 0.0 2.75 21.5 74.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000035215 Lsm7 ENSMUST00000219421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035215 Lsm7 ENSMUST00000217781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035215 Lsm7 ENSMUST00000218119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035215 Lsm7 ENSMUST00000217921 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035215 Lsm7 ENSMUST00000218931 - NO_TRANSLATION retained_intron ENSMUSG00000035215 Lsm7 ENSMUST00000220225 ENSMUSP00000151340 TRANSLATION protein_coding - - 1 78.0 0.0 1.75 0.0 52.1 0.0 -4,-5 0.0 1 8.004 MINOR ENSMUSG00000035215 Lsm7 ENSMUST00000220406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035215 Lsm7 ENSMUST00000218897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052818 Or6c76b ENSMUST00000064893 ENSMUSP00000063431 TRANSLATION protein_coding - CCDS24340.1 - 310.0 0.0 1.0 12.5 167.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052818 Or6c76b ENSMUST00000204622 ENSMUSP00000145260 TRANSLATION protein_coding - CCDS24340.1 5 310.0 0.0 1.0 12.5 167.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019933 Mrln ENSMUST00000187318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019933 Mrln ENSMUST00000189468 - NO_TRANSLATION retained_intron ENSMUSG00000019933 Mrln ENSMUST00000190199 ENSMUSP00000149291 TRANSLATION protein_coding stop - 3 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0098 - -2.0 MINOR ENSMUSG00000019933 Mrln ENSMUST00000188568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019933 Mrln ENSMUST00000020090 ENSMUSP00000150523 TRANSLATION protein_coding - - 2 46.0 0.0 0.95 10.0 0.0 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000035697 Arhgap45 ENSMUST00000043311 ENSMUSP00000041019 TRANSLATION protein_coding - CCDS24005.1 1 1000.0 8.0 4.867 0.1 169.0 0.0 -4,-5 1.0 18 12.0 PRINCIPAL:2 ENSMUSG00000035697 Arhgap45 ENSMUST00000099501 ENSMUSP00000097100 TRANSLATION protein_coding - CCDS48624.1 1 1116.0 8.0 4.867 0.4 169.0 0.0 -4,-7 0.512 21 12.0 ALTERNATIVE:2 ENSMUSG00000035697 Arhgap45 ENSMUST00000150022 - NO_TRANSLATION retained_intron ENSMUSG00000035697 Arhgap45 ENSMUST00000105373 ENSMUSP00000101012 TRANSLATION protein_coding - CCDS83725.1 1 1127.0 8.0 4.867 0.1 169.0 0.0 -4,-7 0.5123 20 12.0 ALTERNATIVE:2 ENSMUSG00000035697 Arhgap45 ENSMUST00000140974 - NO_TRANSLATION retained_intron ENSMUSG00000058084 Or9k2 ENSMUST00000216530 ENSMUSP00000149981 TRANSLATION protein_coding - CCDS24350.1 5 320.0 0.0 1.0 0.1 181.2 3.0 -3,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058084 Or9k2 ENSMUST00000076814 ENSMUSP00000076091 TRANSLATION protein_coding - CCDS24350.1 - 320.0 0.0 1.0 0.1 181.2 3.0 -3,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058084 Or9k2 ENSMUST00000216434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060044 Tmem26 ENSMUST00000218918 ENSMUSP00000151512 TRANSLATION nonsense_mediated_decay - - 1 123.0 0.0 0.0 0.0 135.8 3.0 0,-3 0.0031 - -2.0 MINOR ENSMUSG00000060044 Tmem26 ENSMUST00000219392 ENSMUSP00000151950 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 0.0 0.0 81.4 2.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000060044 Tmem26 ENSMUST00000080995 ENSMUSP00000079789 TRANSLATION protein_coding - CCDS23906.1 1 366.0 0.0 0.0 6.5 404.1 3.0 0,-3 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000069516 Lyz2 ENSMUST00000092163 ENSMUSP00000089801 TRANSLATION protein_coding - CCDS48694.1 1 148.0 21.0 3.5 20.7 190.8 0.0 3,-2 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000045559 Or9k7 ENSMUST00000216253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045559 Or9k7 ENSMUST00000213568 ENSMUSP00000149200 TRANSLATION protein_coding - CCDS24352.1 5 322.0 0.0 1.0 11.8 178.5 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045559 Or9k7 ENSMUST00000058123 ENSMUSP00000089609 TRANSLATION protein_coding - CCDS24352.1 - 322.0 0.0 1.0 11.8 178.5 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048696 Mex3d ENSMUST00000105350 ENSMUSP00000100987 TRANSLATION protein_coding - CCDS48629.1 1 718.0 8.0 0.6 0.1 130.5 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000048696 Mex3d ENSMUST00000123141 ENSMUSP00000115410 TRANSLATION protein_coding start - 2 268.0 8.0 0.0 0.0 42.7 0.0 -4,-5 0.0013 2 -2.0 MINOR ENSMUSG00000075266 Cenpw ENSMUST00000099985 ENSMUSP00000097565 TRANSLATION protein_coding - CCDS35876.1 1 86.0 0.0 2.33 11.0 162.5 0.0 -4,-2 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000075266 Cenpw ENSMUST00000216853 ENSMUSP00000148983 TRANSLATION protein_coding - - 1 84.0 0.0 2.33 11.0 148.8 0.0 -4,-2 0.7566 - 11.0 ALTERNATIVE:1 ENSMUSG00000020185 E2f7 ENSMUST00000174810 - NO_TRANSLATION retained_intron ENSMUSG00000020185 E2f7 ENSMUST00000173948 ENSMUSP00000134039 TRANSLATION nonsense_mediated_decay start - 5 219.0 0.0 1.732 0.0 75.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020185 E2f7 ENSMUST00000073781 ENSMUSP00000073453 TRANSLATION protein_coding - CCDS36055.1 1 904.0 0.0 2.732 3.6 143.0 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000020185 E2f7 ENSMUST00000173471 ENSMUSP00000133494 TRANSLATION protein_coding - CCDS36055.1 1 904.0 0.0 2.732 3.6 143.0 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000020185 E2f7 ENSMUST00000174857 ENSMUSP00000133801 TRANSLATION protein_coding - - 1 140.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000020185 E2f7 ENSMUST00000174593 - NO_TRANSLATION retained_intron ENSMUSG00000020185 E2f7 ENSMUST00000173294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020185 E2f7 ENSMUST00000173634 ENSMUSP00000133813 TRANSLATION protein_coding - - 2 140.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000020185 E2f7 ENSMUST00000172574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035351 Nup37 ENSMUST00000169309 ENSMUSP00000129728 TRANSLATION protein_coding - CCDS24107.1 1 326.0 0.0 9.08 32.8 25.1 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000035351 Nup37 ENSMUST00000052355 ENSMUSP00000059880 TRANSLATION protein_coding - CCDS24107.1 1 326.0 0.0 9.08 32.8 25.1 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000035351 Nup37 ENSMUST00000219121 ENSMUSP00000151416 TRANSLATION protein_coding start - 3 67.0 0.0 1.698 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035351 Nup37 ENSMUST00000218935 - NO_TRANSLATION retained_intron ENSMUSG00000035351 Nup37 ENSMUST00000219059 - NO_TRANSLATION retained_intron ENSMUSG00000035351 Nup37 ENSMUST00000219859 - NO_TRANSLATION retained_intron ENSMUSG00000020177 Lyz3 ENSMUST00000159193 ENSMUSP00000125436 TRANSLATION protein_coding - CCDS24192.1 1 151.0 2.0 3.5 2.9 159.2 0.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020177 Lyz3 ENSMUST00000020392 ENSMUSP00000020392 TRANSLATION protein_coding - CCDS24192.1 1 151.0 2.0 3.5 2.9 159.2 0.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000091618 H60c ENSMUST00000214645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091618 H60c ENSMUST00000170893 ENSMUSP00000126536 TRANSLATION protein_coding - CCDS56668.1 1 197.0 0.0 0.4 0.0 0.0 0.0 3,-2 0.5211 - 6.0 ALTERNATIVE:2 ENSMUSG00000091618 H60c ENSMUST00000216211 ENSMUSP00000149470 TRANSLATION protein_coding - - 1 226.0 0.0 0.4 0.0 0.0 0.0 0,-4 0.6964 - 6.0 PRINCIPAL:4 ENSMUSG00000056148 Rdh9 ENSMUST00000052652 ENSMUSP00000057732 TRANSLATION protein_coding - CCDS24251.1 1 317.0 27.0 4.0 17.2 135.8 0.0 1,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000056148 Rdh9 ENSMUST00000128133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056148 Rdh9 ENSMUST00000136223 ENSMUSP00000120523 TRANSLATION protein_coding - - 1 120.0 10.0 1.0 0.0 37.9 0.0 1,-2 0.0028 - 0.126 MINOR ENSMUSG00000038481 Cdk19 ENSMUST00000214659 ENSMUSP00000149435 TRANSLATION nonsense_mediated_decay - - 1 164.0 13.0 3.75 0.0 82.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038481 Cdk19 ENSMUST00000216736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038481 Cdk19 ENSMUST00000215000 ENSMUSP00000150085 TRANSLATION nonsense_mediated_decay - - 1 44.0 5.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038481 Cdk19 ENSMUST00000044672 ENSMUSP00000040936 TRANSLATION protein_coding - CCDS48545.1 1 501.0 16.0 10.25 11.4 209.0 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000038481 Cdk19 ENSMUST00000095743 ENSMUSP00000093414 TRANSLATION protein_coding - CCDS23795.1 1 457.0 15.0 8.75 1.0 151.0 0.0 -4,-5 0.0424 4 10.854 MINOR ENSMUSG00000047129 1700113H08Rik ENSMUST00000189456 ENSMUSP00000140447 TRANSLATION protein_coding - - 5 207.0 0.0 0.0 0.0 215.1 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000047129 1700113H08Rik ENSMUST00000169849 ENSMUSP00000130852 TRANSLATION protein_coding - CCDS48660.1 5 327.0 0.0 0.0 0.3 365.3 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047129 1700113H08Rik ENSMUST00000189775 ENSMUSP00000141184 TRANSLATION protein_coding - - 1 161.0 0.0 0.0 0.0 218.6 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000042570 Mier2 ENSMUST00000168601 - NO_TRANSLATION retained_intron ENSMUSG00000042570 Mier2 ENSMUST00000165778 ENSMUSP00000133165 TRANSLATION protein_coding stop - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042570 Mier2 ENSMUST00000167760 - NO_TRANSLATION retained_intron ENSMUSG00000042570 Mier2 ENSMUST00000170018 ENSMUSP00000130460 TRANSLATION protein_coding stop - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0007 - -2.0 MINOR ENSMUSG00000042570 Mier2 ENSMUST00000170950 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042570 Mier2 ENSMUST00000167183 ENSMUSP00000126131 TRANSLATION nonsense_mediated_decay - - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000042570 Mier2 ENSMUST00000164895 ENSMUSP00000127532 TRANSLATION protein_coding stop - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042570 Mier2 ENSMUST00000167689 ENSMUSP00000133238 TRANSLATION protein_coding stop - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042570 Mier2 ENSMUST00000165028 ENSMUSP00000127387 TRANSLATION protein_coding - CCDS83723.1 1 541.0 4.0 1.8435 3.5 31.9 0.0 -4,-7 0.9177 2 13.0 ALTERNATIVE:2 ENSMUSG00000042570 Mier2 ENSMUST00000165866 ENSMUSP00000127332 TRANSLATION protein_coding stop - 2 195.0 0.0 0.0 0.0 0.0 0.0 -3,-7 0.0001 - -2.0 MINOR ENSMUSG00000042570 Mier2 ENSMUST00000062855 ENSMUSP00000059864 TRANSLATION protein_coding - CCDS48619.1 1 539.0 4.0 1.8435 3.5 31.9 0.0 -4,-7 1.0 2 13.0 PRINCIPAL:4 ENSMUSG00000019987 Arg1 ENSMUST00000218260 - NO_TRANSLATION retained_intron ENSMUSG00000019987 Arg1 ENSMUST00000020161 ENSMUSP00000020161 TRANSLATION protein_coding - CCDS48523.1 1 323.0 6.0 7.25 9.1 258.7 0.0 -4,-5 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000019987 Arg1 ENSMUST00000220186 - NO_TRANSLATION retained_intron ENSMUSG00000025407 Gli1 ENSMUST00000219671 ENSMUSP00000151749 TRANSLATION protein_coding stop - 1 93.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025407 Gli1 ENSMUST00000218451 - NO_TRANSLATION retained_intron ENSMUSG00000025407 Gli1 ENSMUST00000218236 ENSMUSP00000151718 TRANSLATION protein_coding stop - 1 93.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025407 Gli1 ENSMUST00000026474 ENSMUSP00000026474 TRANSLATION protein_coding - CCDS24238.1 1 1111.0 21.0 3.8 5.7 59.6 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000025407 Gli1 ENSMUST00000219808 - NO_TRANSLATION retained_intron ENSMUSG00000019947 Arid5b ENSMUST00000020106 ENSMUSP00000020106 TRANSLATION nonsense_mediated_decay - - 1 254.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 1 -2.0 MINOR ENSMUSG00000019947 Arid5b ENSMUST00000218532 ENSMUSP00000151665 TRANSLATION protein_coding - - 1 945.0 0.0 2.9 9.9 60.5 0.0 -4,-7 0.9463 11 11.0 ALTERNATIVE:1 ENSMUSG00000019947 Arid5b ENSMUST00000219238 ENSMUSP00000151227 TRANSLATION protein_coding - CCDS35929.1 1 1188.0 0.0 2.9 9.9 60.5 0.0 -4,-5 1.0 12 11.0 PRINCIPAL:3 ENSMUSG00000019947 Arid5b ENSMUST00000218425 - NO_TRANSLATION retained_intron ENSMUSG00000020248 Nfyb ENSMUST00000143749 - NO_TRANSLATION retained_intron ENSMUSG00000020248 Nfyb ENSMUST00000145561 - NO_TRANSLATION retained_intron ENSMUSG00000020248 Nfyb ENSMUST00000142523 ENSMUSP00000116039 TRANSLATION protein_coding stop - 3 106.0 0.0 1.75 0.0 71.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020248 Nfyb ENSMUST00000129640 - NO_TRANSLATION retained_intron ENSMUSG00000020248 Nfyb ENSMUST00000128397 - NO_TRANSLATION retained_intron ENSMUSG00000020248 Nfyb ENSMUST00000130911 ENSMUSP00000122403 TRANSLATION protein_coding - CCDS48654.1 1 207.0 0.0 3.125 36.9 100.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000020248 Nfyb ENSMUST00000127832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038332 Sesn1 ENSMUST00000041438 ENSMUSP00000043034 TRANSLATION protein_coding - CCDS23809.1 1 492.0 0.0 3.6 17.7 696.2 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000038332 Sesn1 ENSMUST00000214835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038332 Sesn1 ENSMUST00000099931 ENSMUSP00000097515 TRANSLATION protein_coding - CCDS48550.1 1 551.0 0.0 3.6 11.6 696.2 0.0 -4,-5 0.8457 6 14.54 MINOR ENSMUSG00000050994 Adgb ENSMUST00000208717 ENSMUSP00000146658 TRANSLATION protein_coding - - 5 1633.0 0.0 0.0 0.0 30.9 0.0 -4,-6 0.2956 8 0.0 ALTERNATIVE:2 ENSMUSG00000050994 Adgb ENSMUST00000148816 ENSMUSP00000133652 TRANSLATION nonsense_mediated_decay start - 1 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000050994 Adgb ENSMUST00000172530 ENSMUSP00000134378 TRANSLATION protein_coding - - 5 1657.0 0.0 0.0 0.0 30.9 0.0 -4,-6 0.2956 8 0.0 PRINCIPAL:5 ENSMUSG00000050994 Adgb ENSMUST00000045328 ENSMUSP00000045452 TRANSLATION protein_coding - - 2 356.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.3674 1 0.0 MINOR ENSMUSG00000050994 Adgb ENSMUST00000132573 ENSMUSP00000120422 TRANSLATION protein_coding stop - 5 752.0 0.0 0.0 0.0 32.4 0.0 -4,-6 0.1948 1 -2.0 MINOR ENSMUSG00000038302 Afg1l ENSMUST00000041024 ENSMUSP00000036149 TRANSLATION protein_coding - CCDS23811.1 1 480.0 7.0 0.0 7.7 356.3 0.0 -4,0 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000038302 Afg1l ENSMUST00000151747 ENSMUSP00000120389 TRANSLATION protein_coding start - 2 348.0 7.0 0.0 0.0 317.0 0.0 -4,-6 0.0055 5 -2.0 MINOR ENSMUSG00000038302 Afg1l ENSMUST00000133326 ENSMUSP00000123510 TRANSLATION nonsense_mediated_decay - - 1 279.0 7.0 0.0 0.0 215.9 0.0 -4,0 0.0013 6 -2.0 MINOR ENSMUSG00000038302 Afg1l ENSMUST00000149832 ENSMUSP00000119620 TRANSLATION nonsense_mediated_decay start - 5 80.0 0.0 0.0 0.0 91.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038522 Mfsd4b1 ENSMUST00000176975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038522 Mfsd4b1 ENSMUST00000163705 ENSMUSP00000128324 TRANSLATION protein_coding - CCDS35884.2 1 425.0 0.0 0.0 0.0 51.2 0.0 -1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038522 Mfsd4b1 ENSMUST00000239109 - NO_TRANSLATION retained_intron ENSMUSG00000071072 Ptges3 ENSMUST00000052798 ENSMUSP00000050292 TRANSLATION protein_coding - CCDS36087.1 1 160.0 0.0 3.948 30.8 40.2 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000071072 Ptges3 ENSMUST00000084771 ENSMUSP00000081827 TRANSLATION protein_coding - - 5 130.0 0.0 2.948 1.0 40.2 0.0 -4,-5 0.0623 4 10.002 MINOR ENSMUSG00000071072 Ptges3 ENSMUST00000148943 - NO_TRANSLATION retained_intron ENSMUSG00000020020 Usp44 ENSMUST00000216224 ENSMUSP00000149020 TRANSLATION protein_coding - - 5 711.0 4.0 1.798 9.2 254.1 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000020020 Usp44 ENSMUST00000095333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110723 Gm49353 ENSMUST00000217011 ENSMUSP00000152743 TRANSLATION protein_coding,RT start - 3 33.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.6301 - -2.0 PRINCIPAL:1 ENSMUSG00000069456 Rdh16 ENSMUST00000125163 ENSMUSP00000122839 TRANSLATION nonsense_mediated_decay - - 2 47.0 0.0 0.75 0.0 0.0 0.0 2,-2 0.0015 - -2.0 MINOR ENSMUSG00000069456 Rdh16 ENSMUST00000071646 ENSMUSP00000071573 TRANSLATION protein_coding - CCDS24252.1 1 317.0 27.0 5.58 17.2 138.1 0.0 1,-3 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000069456 Rdh16 ENSMUST00000155739 ENSMUSP00000115993 TRANSLATION nonsense_mediated_decay - - 1 112.0 10.0 1.75 1.0 38.0 0.0 1,-3 0.0149 1 -2.0 MINOR ENSMUSG00000020052 Ascl1 ENSMUST00000020243 ENSMUSP00000020243 TRANSLATION protein_coding - CCDS24101.1 1 231.0 0.0 0.6 1.4 60.1 0.0 -2,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000039480 Nt5dc1 ENSMUST00000099973 ENSMUSP00000097553 TRANSLATION protein_coding - - 1 201.0 3.0 2.866 0.0 86.7 0.0 -4,-5 0.0 7 5.01 MINOR ENSMUSG00000039480 Nt5dc1 ENSMUST00000047885 ENSMUSP00000047126 TRANSLATION protein_coding - CCDS23779.1 1 467.0 3.0 4.861 0.4 187.9 0.0 -4,-5 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000039480 Nt5dc1 ENSMUST00000130290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039480 Nt5dc1 ENSMUST00000213269 ENSMUSP00000150127 TRANSLATION protein_coding - - 5 162.0 3.0 2.716 0.0 83.1 0.0 -4,-5 0.0 6 4.71 MINOR ENSMUSG00000039480 Nt5dc1 ENSMUST00000105512 ENSMUSP00000101151 TRANSLATION protein_coding - - 1 466.0 3.0 4.801 0.4 187.2 0.0 -4,-5 0.3192 13 8.88 ALTERNATIVE:2 ENSMUSG00000039480 Nt5dc1 ENSMUST00000129363 ENSMUSP00000149497 TRANSLATION protein_coding start - 3 150.0 0.0 0.48 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000095817 Gm3238 ENSMUST00000168298 ENSMUSP00000130008 TRANSLATION protein_coding - CCDS56727.1 - 230.0 0.0 0.0 0.0 70.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000020089 Ppa1 ENSMUST00000020286 ENSMUSP00000020286 TRANSLATION protein_coding - CCDS23882.1 1 289.0 12.0 7.83 28.8 203.7 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000020089 Ppa1 ENSMUST00000160470 - NO_TRANSLATION retained_intron ENSMUSG00000020089 Ppa1 ENSMUST00000160607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020089 Ppa1 ENSMUST00000162028 - NO_TRANSLATION retained_intron ENSMUSG00000019916 P4ha1 ENSMUST00000092512 ENSMUSP00000090170 TRANSLATION protein_coding - CCDS83699.1 1 454.0 7.0 10.55 0.0 195.8 0.0 4,-1 0.0995 11 12.002 MINOR ENSMUSG00000019916 P4ha1 ENSMUST00000105466 ENSMUSP00000101106 TRANSLATION protein_coding - CCDS83698.1 1 534.0 7.0 11.55 11.9 196.1 0.0 4,-1 1.0 13 17.0 ALTERNATIVE:1 ENSMUSG00000019916 P4ha1 ENSMUST00000009789 ENSMUSP00000009789 TRANSLATION protein_coding - CCDS23863.1 1 534.0 7.0 11.55 11.9 196.1 0.0 4,-1 1.0 13 17.0 PRINCIPAL:5 ENSMUSG00000019906 Lin7a ENSMUST00000020057 ENSMUSP00000020057 TRANSLATION protein_coding - CCDS24160.1 1 233.0 0.0 5.05 0.0 126.3 0.0 -4,-7 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000019906 Lin7a ENSMUST00000218031 ENSMUSP00000151715 TRANSLATION protein_coding - CCDS36050.1 1 111.0 0.0 2.0 2.4 61.2 0.0 -4,-5 0.3335 1 3.094 MINOR ENSMUSG00000019906 Lin7a ENSMUST00000105280 ENSMUSP00000100916 TRANSLATION protein_coding - CCDS36050.1 1 111.0 0.0 2.0 2.4 61.2 0.0 -4,-5 0.3335 1 3.094 MINOR ENSMUSG00000020228 Helb ENSMUST00000148241 - NO_TRANSLATION retained_intron ENSMUSG00000020228 Helb ENSMUST00000020449 ENSMUSP00000020449 TRANSLATION protein_coding - CCDS24203.1 1 1074.0 11.0 0.0 0.0 0.0 0.0 -4,-5 0.933 14 6.0 PRINCIPAL:1 ENSMUSG00000020228 Helb ENSMUST00000154501 ENSMUSP00000116954 TRANSLATION nonsense_mediated_decay - - 5 571.0 9.0 0.0 0.0 0.0 0.0 -4,-5 0.0744 5 -2.0 MINOR ENSMUSG00000060904 Arl1 ENSMUST00000080379 ENSMUSP00000079246 TRANSLATION protein_coding stop - 3 138.0 20.0 3.75 0.0 218.1 0.0 -4,-6 0.0014 5 -2.0 MINOR ENSMUSG00000060904 Arl1 ENSMUST00000116234 ENSMUSP00000111942 TRANSLATION protein_coding - CCDS36025.1 1 181.0 23.0 5.08 36.9 258.9 0.0 -4,-2 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000060904 Arl1 ENSMUST00000170137 ENSMUSP00000127889 TRANSLATION protein_coding stop - 5 52.0 11.0 1.5 0.0 64.8 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000089789 Rdh1 ENSMUST00000073639 ENSMUSP00000073322 TRANSLATION protein_coding - CCDS24250.1 1 317.0 27.0 4.0 17.2 141.6 0.0 1,-3 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000080115 Eef1akmt3 ENSMUST00000116231 ENSMUSP00000111939 TRANSLATION protein_coding - CCDS56752.1 5 232.0 15.0 3.0 0.0 125.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000025357 Dgka ENSMUST00000219834 ENSMUSP00000152021 TRANSLATION nonsense_mediated_decay - - 1 253.0 8.0 5.75 0.0 133.9 0.0 -4,-5 0.0236 6 -2.0 MINOR ENSMUSG00000025357 Dgka ENSMUST00000026414 ENSMUSP00000026414 TRANSLATION protein_coding - CCDS24290.1 1 730.0 8.0 5.5 5.8 477.0 0.0 -4,-5 1.0 18 19.502 PRINCIPAL:1 ENSMUSG00000025357 Dgka ENSMUST00000217957 - NO_TRANSLATION retained_intron ENSMUSG00000025393 Atp5f1b ENSMUST00000126751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025393 Atp5f1b ENSMUST00000124993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025393 Atp5f1b ENSMUST00000123803 - NO_TRANSLATION retained_intron ENSMUSG00000025393 Atp5f1b ENSMUST00000125992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025393 Atp5f1b ENSMUST00000127439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025393 Atp5f1b ENSMUST00000144918 - NO_TRANSLATION retained_intron ENSMUSG00000025393 Atp5f1b ENSMUST00000126040 - NO_TRANSLATION retained_intron ENSMUSG00000025393 Atp5f1b ENSMUST00000139295 - NO_TRANSLATION retained_intron ENSMUSG00000025393 Atp5f1b ENSMUST00000026459 ENSMUSP00000026459 TRANSLATION protein_coding - CCDS24259.1 1 529.0 12.0 9.0 16.0 296.4 0.0 -3,1 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000019866 Crybg1 ENSMUST00000020017 ENSMUSP00000020017 TRANSLATION protein_coding - CCDS48553.1 5 1691.0 8.0 8.75 0.0 482.2 0.0 -4,-7 0.7154 31 14.0 ALTERNATIVE:2 ENSMUSG00000019866 Crybg1 ENSMUST00000239010 ENSMUSP00000158875 TRANSLATION protein_coding stop - - 291.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 1 -2.0 MINOR ENSMUSG00000019866 Crybg1 ENSMUST00000200401 ENSMUSP00000143429 TRANSLATION protein_coding - - 5 2065.0 8.0 8.75 0.0 482.2 0.0 -4,-5 1.0 34 14.0 PRINCIPAL:2 ENSMUSG00000001155 Ftcd ENSMUST00000137347 - NO_TRANSLATION retained_intron ENSMUSG00000001155 Ftcd ENSMUST00000001183 ENSMUSP00000001183 TRANSLATION protein_coding - CCDS23950.1 1 541.0 1.0 12.25 28.2 698.4 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000001155 Ftcd ENSMUST00000146344 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074657 Kif5a ENSMUST00000217895 ENSMUSP00000151402 TRANSLATION protein_coding - CCDS24233.1 1 1027.0 11.0 14.145 9.9 369.2 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000074657 Kif5a ENSMUST00000099172 ENSMUSP00000096775 TRANSLATION protein_coding - CCDS24233.1 1 1027.0 11.0 14.145 9.9 369.2 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000074657 Kif5a ENSMUST00000218298 ENSMUSP00000151969 TRANSLATION nonsense_mediated_decay - - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046916 Myct1 ENSMUST00000051809 ENSMUSP00000050430 TRANSLATION protein_coding - CCDS56681.1 1 188.0 0.0 0.2 8.6 257.0 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000034613 Ppm1h ENSMUST00000162969 ENSMUSP00000124006 TRANSLATION protein_coding - - 3 132.0 4.0 2.165 0.0 43.9 0.0 -4,-5 0.0 4 4.95 MINOR ENSMUSG00000034613 Ppm1h ENSMUST00000067918 ENSMUSP00000066561 TRANSLATION protein_coding - CCDS48705.1 1 513.0 10.0 5.745 23.9 89.3 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000034613 Ppm1h ENSMUST00000161371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034613 Ppm1h ENSMUST00000162853 - NO_TRANSLATION retained_intron ENSMUSG00000034613 Ppm1h ENSMUST00000161487 ENSMUSP00000124982 TRANSLATION protein_coding - CCDS48706.1 1 469.0 8.0 5.58 0.0 88.3 0.0 -4,-7 0.0868 14 16.272 MINOR ENSMUSG00000034613 Ppm1h ENSMUST00000160315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034613 Ppm1h ENSMUST00000161065 - NO_TRANSLATION retained_intron ENSMUSG00000034613 Ppm1h ENSMUST00000159885 - NO_TRANSLATION retained_intron ENSMUSG00000074781 Ube2n ENSMUST00000220428 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074781 Ube2n ENSMUST00000219381 - NO_TRANSLATION retained_intron ENSMUSG00000074781 Ube2n ENSMUST00000220127 ENSMUSP00000151850 TRANSLATION nonsense_mediated_decay - - 1 87.0 0.0 1.43 0.0 55.3 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000074781 Ube2n ENSMUST00000219741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074781 Ube2n ENSMUST00000217757 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074781 Ube2n ENSMUST00000099329 ENSMUSP00000096932 TRANSLATION protein_coding - CCDS48677.1 1 152.0 0.0 3.83 31.2 161.6 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000003341 Atp8b3 ENSMUST00000220326 ENSMUSP00000151571 TRANSLATION nonsense_mediated_decay - - 1 857.0 2.0 11.994 0.0 163.8 5.0 -4,-5 0.0085 5 -2.0 MINOR ENSMUSG00000003341 Atp8b3 ENSMUST00000020383 ENSMUSP00000020383 TRANSLATION protein_coding - CCDS24024.1 1 1335.0 3.0 15.534 0.0 403.0 10.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000003341 Atp8b3 ENSMUST00000219648 ENSMUSP00000151589 TRANSLATION protein_coding - - 1 137.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000037440 Vnn1 ENSMUST00000041416 ENSMUSP00000040599 TRANSLATION protein_coding - CCDS35868.1 1 512.0 0.0 7.0 2.5 61.4 0.0 2,-2 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000037440 Vnn1 ENSMUST00000219254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046041 Or6c3b ENSMUST00000056736 ENSMUSP00000055860 TRANSLATION protein_coding - CCDS24330.1 - 308.0 0.0 1.0 0.0 171.9 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046041 Or6c3b ENSMUST00000204641 ENSMUSP00000145400 TRANSLATION protein_coding - CCDS24330.1 5 308.0 0.0 1.0 0.0 171.9 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000015501 Hivep2 ENSMUST00000191464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015501 Hivep2 ENSMUST00000186989 ENSMUSP00000140180 TRANSLATION protein_coding stop - 1 373.0 8.0 0.16 0.0 39.3 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000015501 Hivep2 ENSMUST00000185392 - NO_TRANSLATION retained_intron ENSMUSG00000015501 Hivep2 ENSMUST00000015645 ENSMUSP00000015645 TRANSLATION protein_coding - CCDS23704.1 1 2430.0 15.0 2.132 0.4 83.7 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000015501 Hivep2 ENSMUST00000187083 ENSMUSP00000140290 TRANSLATION protein_coding - CCDS23704.1 1 2430.0 15.0 2.132 0.4 83.7 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000015501 Hivep2 ENSMUST00000191138 ENSMUSP00000140150 TRANSLATION protein_coding - CCDS23704.1 1 2430.0 15.0 2.132 0.4 83.7 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000078348 Sf3b5 ENSMUST00000105139 ENSMUSP00000100771 TRANSLATION protein_coding - CCDS35843.1 - 86.0 0.0 1.0 36.9 133.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036875 Dna2 ENSMUST00000137378 - NO_TRANSLATION retained_intron ENSMUSG00000036875 Dna2 ENSMUST00000131422 ENSMUSP00000115750 TRANSLATION protein_coding - CCDS35923.1 1 1062.0 16.0 20.875 4.6 507.4 0.0 -4,-5 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000036875 Dna2 ENSMUST00000139212 - NO_TRANSLATION retained_intron ENSMUSG00000036875 Dna2 ENSMUST00000129785 - NO_TRANSLATION retained_intron ENSMUSG00000036875 Dna2 ENSMUST00000092462 ENSMUSP00000090119 TRANSLATION nonsense_mediated_decay - - 1 966.0 13.0 17.375 0.0 387.1 0.0 -4,-5 0.0073 14 -2.0 MINOR ENSMUSG00000036875 Dna2 ENSMUST00000131715 - NO_TRANSLATION retained_intron ENSMUSG00000019856 Fam184a ENSMUST00000218780 ENSMUSP00000151298 TRANSLATION protein_coding start - 5 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019856 Fam184a ENSMUST00000171807 ENSMUSP00000130315 TRANSLATION protein_coding start - 5 690.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0323 10 -2.0 MINOR ENSMUSG00000019856 Fam184a ENSMUST00000218682 ENSMUSP00000151789 TRANSLATION protein_coding start - 5 514.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0029 7 -2.0 MINOR ENSMUSG00000019856 Fam184a ENSMUST00000164393 ENSMUSP00000126220 TRANSLATION protein_coding start - 5 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000019856 Fam184a ENSMUST00000165986 ENSMUSP00000128132 TRANSLATION nonsense_mediated_decay start - 1 372.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 4 -2.0 MINOR ENSMUSG00000019856 Fam184a ENSMUST00000169866 ENSMUSP00000128426 TRANSLATION protein_coding - - 5 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000019856 Fam184a ENSMUST00000218659 ENSMUSP00000151350 TRANSLATION nonsense_mediated_decay start - 5 278.0 0.0 0.0 0.0 0.0 0.0 -2,-4 0.0007 3 -2.0 MINOR ENSMUSG00000019856 Fam184a ENSMUST00000170839 - NO_TRANSLATION retained_intron ENSMUSG00000019856 Fam184a ENSMUST00000163761 ENSMUSP00000127400 TRANSLATION protein_coding start - 5 1003.0 0.0 0.8 0.0 271.0 0.0 -4,-5 0.202 16 -2.0 MINOR ENSMUSG00000019856 Fam184a ENSMUST00000168949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019856 Fam184a ENSMUST00000217939 ENSMUSP00000151765 TRANSLATION protein_coding start - 5 126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019856 Fam184a ENSMUST00000020003 ENSMUSP00000020003 TRANSLATION protein_coding - CCDS35901.1 5 1143.0 0.0 0.8 17.3 271.0 0.0 -4,-7 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000049109 Themis ENSMUST00000056097 ENSMUSP00000060129 TRANSLATION protein_coding - CCDS23758.1 1 636.0 0.0 0.0 1.6 353.2 0.0 -4,-5 1.0 5 1.0 PRINCIPAL:2 ENSMUSG00000049109 Themis ENSMUST00000162343 - NO_TRANSLATION retained_intron ENSMUSG00000049109 Themis ENSMUST00000105516 ENSMUSP00000101155 TRANSLATION protein_coding - - 1 595.0 0.0 0.0 0.0 353.2 0.0 -4,-5 0.0964 4 0.0 ALTERNATIVE:2 ENSMUSG00000049109 Themis ENSMUST00000161345 ENSMUSP00000123894 TRANSLATION protein_coding stop - 3 203.0 0.0 0.0 0.0 96.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000049109 Themis ENSMUST00000159927 ENSMUSP00000123919 TRANSLATION nonsense_mediated_decay - - 1 94.0 0.0 0.0 0.0 34.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049109 Themis ENSMUST00000162202 ENSMUSP00000124451 TRANSLATION nonsense_mediated_decay - - 1 94.0 0.0 0.0 0.0 34.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049109 Themis ENSMUST00000219119 - NO_TRANSLATION retained_intron ENSMUSG00000049109 Themis ENSMUST00000060409 ENSMUSP00000055315 TRANSLATION protein_coding - - 1 605.0 0.0 0.0 0.0 353.2 0.0 -4,-5 0.1136 4 0.0 ALTERNATIVE:2 ENSMUSG00000094120 Gm3233 ENSMUST00000168997 ENSMUSP00000129915 TRANSLATION protein_coding - - - 230.0 0.0 0.0 0.0 51.0 0.0 -4,-6 0.7117 - 6.0 PRINCIPAL:1 ENSMUSG00000006736 Tspan31 ENSMUST00000218603 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006736 Tspan31 ENSMUST00000060991 ENSMUSP00000057751 TRANSLATION protein_coding - CCDS24227.1 1 210.0 0.0 5.25 29.1 63.4 0.0 -2,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000006736 Tspan31 ENSMUST00000220344 - NO_TRANSLATION retained_intron ENSMUSG00000006736 Tspan31 ENSMUST00000217875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006736 Tspan31 ENSMUST00000218488 - NO_TRANSLATION retained_intron ENSMUSG00000020115 Tbk1 ENSMUST00000219493 ENSMUSP00000151935 TRANSLATION protein_coding stop - 3 108.0 10.0 2.75 0.0 80.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020115 Tbk1 ENSMUST00000220386 - NO_TRANSLATION retained_intron ENSMUSG00000020115 Tbk1 ENSMUST00000020316 ENSMUSP00000020316 TRANSLATION protein_coding - CCDS24212.1 1 729.0 17.0 17.5 29.4 154.0 0.0 -4,-7 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000020115 Tbk1 ENSMUST00000218460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020115 Tbk1 ENSMUST00000219244 - NO_TRANSLATION retained_intron ENSMUSG00000020115 Tbk1 ENSMUST00000219439 - NO_TRANSLATION retained_intron ENSMUSG00000020115 Tbk1 ENSMUST00000219400 ENSMUSP00000151440 TRANSLATION nonsense_mediated_decay - - 2 121.0 13.0 3.25 0.0 59.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000047417 Rexo1 ENSMUST00000182260 ENSMUSP00000138493 TRANSLATION protein_coding start - 1 536.0 14.0 4.4464 0.0 227.1 0.0 -4,0 0.5586 3 -2.0 MINOR ENSMUSG00000047417 Rexo1 ENSMUST00000057910 ENSMUSP00000049705 TRANSLATION protein_coding - CCDS24025.1 1 1213.0 14.0 4.3375 0.3 234.0 0.0 -4,-7 0.6494 6 13.118 PRINCIPAL:3 ENSMUSG00000047417 Rexo1 ENSMUST00000182682 - NO_TRANSLATION retained_intron ENSMUSG00000047417 Rexo1 ENSMUST00000183139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047417 Rexo1 ENSMUST00000183073 ENSMUSP00000138329 TRANSLATION nonsense_mediated_decay start - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047417 Rexo1 ENSMUST00000183233 ENSMUSP00000158752 TRANSLATION protein_coding - - 1 529.0 14.0 4.3375 0.0 234.0 0.0 -4,-1 0.2405 3 13.118 ALTERNATIVE:2 ENSMUSG00000047417 Rexo1 ENSMUST00000182604 ENSMUSP00000158646 TRANSLATION protein_coding - - 1 536.0 14.0 4.3375 0.0 227.4 0.0 -4,-1 0.5318 3 13.784 ALTERNATIVE:2 ENSMUSG00000047417 Rexo1 ENSMUST00000183160 ENSMUSP00000138616 TRANSLATION nonsense_mediated_decay start - 3 93.0 7.0 0.29 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000069421 Or6c69b ENSMUST00000214206 ENSMUSP00000149044 TRANSLATION protein_coding - CCDS24337.1 5 312.0 0.0 1.0 12.5 168.4 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069421 Or6c69b ENSMUST00000214878 ENSMUSP00000150931 TRANSLATION protein_coding - CCDS24337.1 5 312.0 0.0 1.0 12.5 168.4 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069421 Or6c69b ENSMUST00000217283 ENSMUSP00000150364 TRANSLATION protein_coding - CCDS24337.1 5 312.0 0.0 1.0 12.5 168.4 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069421 Or6c69b ENSMUST00000091986 ENSMUSP00000089612 TRANSLATION protein_coding - CCDS24337.1 - 312.0 0.0 1.0 12.5 168.4 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038774 Ascc3 ENSMUST00000035606 ENSMUSP00000036726 TRANSLATION protein_coding - CCDS48555.1 5 2198.0 17.0 29.168 9.1 739.0 0.0 -4,-7 1.0 40 21.0 PRINCIPAL:1 ENSMUSG00000038774 Ascc3 ENSMUST00000217968 - NO_TRANSLATION retained_intron ENSMUSG00000038774 Ascc3 ENSMUST00000217725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038774 Ascc3 ENSMUST00000219226 ENSMUSP00000151983 TRANSLATION protein_coding - - 5 48.0 0.0 1.2 0.0 0.0 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000038774 Ascc3 ENSMUST00000220026 - NO_TRANSLATION retained_intron ENSMUSG00000038774 Ascc3 ENSMUST00000220355 ENSMUSP00000151273 TRANSLATION protein_coding stop - 5 334.0 0.0 3.3 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000038774 Ascc3 ENSMUST00000219172 - NO_TRANSLATION retained_intron ENSMUSG00000038774 Ascc3 ENSMUST00000219085 - NO_TRANSLATION retained_intron ENSMUSG00000038774 Ascc3 ENSMUST00000220178 - NO_TRANSLATION retained_intron ENSMUSG00000019823 Mical1 ENSMUST00000136681 - NO_TRANSLATION retained_intron ENSMUSG00000019823 Mical1 ENSMUST00000125730 - NO_TRANSLATION retained_intron ENSMUSG00000019823 Mical1 ENSMUST00000125099 - NO_TRANSLATION retained_intron ENSMUSG00000019823 Mical1 ENSMUST00000151486 ENSMUSP00000116386 TRANSLATION protein_coding stop - 2 43.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019823 Mical1 ENSMUST00000119962 ENSMUSP00000113783 TRANSLATION protein_coding - - 5 1048.0 42.0 18.33 0.1 196.9 0.0 -4,-5 0.7734 27 14.0 ALTERNATIVE:2 ENSMUSG00000019823 Mical1 ENSMUST00000019967 ENSMUSP00000019967 TRANSLATION protein_coding - CCDS35888.1 1 1048.0 42.0 18.33 0.1 196.9 0.0 -4,-5 1.0 27 14.0 PRINCIPAL:4 ENSMUSG00000019823 Mical1 ENSMUST00000134010 - NO_TRANSLATION retained_intron ENSMUSG00000019823 Mical1 ENSMUST00000123798 - NO_TRANSLATION retained_intron ENSMUSG00000019823 Mical1 ENSMUST00000138657 - NO_TRANSLATION retained_intron ENSMUSG00000019823 Mical1 ENSMUST00000126436 ENSMUSP00000114969 TRANSLATION nonsense_mediated_decay - - 5 939.0 42.0 14.65 0.0 87.2 0.0 -4,-5 0.0161 20 -2.0 MINOR ENSMUSG00000019823 Mical1 ENSMUST00000130838 - NO_TRANSLATION retained_intron ENSMUSG00000019823 Mical1 ENSMUST00000099934 ENSMUSP00000097519 TRANSLATION protein_coding - CCDS48547.1 1 975.0 28.0 17.33 0.0 176.0 0.0 -4,-5 0.122 25 6.002 MINOR ENSMUSG00000051354 Samd3 ENSMUST00000218301 ENSMUSP00000151853 TRANSLATION protein_coding - - 1 300.0 0.0 0.225 0.0 39.9 0.0 -4,-7 0.0275 - 7.824 MINOR ENSMUSG00000051354 Samd3 ENSMUST00000219318 - NO_TRANSLATION retained_intron ENSMUSG00000051354 Samd3 ENSMUST00000219738 ENSMUSP00000151275 TRANSLATION protein_coding start - 5 78.0 0.0 0.264 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000051354 Samd3 ENSMUST00000164660 ENSMUSP00000129054 TRANSLATION protein_coding - CCDS48524.1 1 273.0 0.0 0.225 0.1 39.9 0.0 -4,-5 0.1216 - 7.824 MINOR ENSMUSG00000051354 Samd3 ENSMUST00000220219 ENSMUSP00000151558 TRANSLATION protein_coding - CCDS48525.1 5 514.0 0.0 0.739 7.7 39.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051354 Samd3 ENSMUST00000060716 ENSMUSP00000057805 TRANSLATION protein_coding - CCDS48525.1 5 514.0 0.0 0.739 7.7 39.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051190 Or7c70 ENSMUST00000205100 ENSMUSP00000144815 TRANSLATION protein_coding - CCDS35964.1 2 320.0 0.0 1.0 6.2 195.6 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051190 Or7c70 ENSMUST00000061289 ENSMUSP00000054345 TRANSLATION protein_coding - CCDS35964.1 - 320.0 0.0 1.0 6.2 195.6 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044897 Or6c74 ENSMUST00000205181 ENSMUSP00000144938 TRANSLATION protein_coding - CCDS24346.1 2 310.0 0.0 1.0 11.6 168.8 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044897 Or6c74 ENSMUST00000214177 ENSMUSP00000149027 TRANSLATION protein_coding - CCDS24346.1 5 310.0 0.0 1.0 11.6 168.8 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044897 Or6c74 ENSMUST00000054364 ENSMUSP00000056626 TRANSLATION protein_coding - CCDS24346.1 - 310.0 0.0 1.0 11.6 168.8 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050157 Gm867 ENSMUST00000059658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050157 Gm867 ENSMUST00000219979 ENSMUSP00000151812 TRANSLATION protein_coding - - 3 151.0 0.0 1.223 4.6 99.2 0.0 -4,-7 0.967 - 14.0 PRINCIPAL:1 ENSMUSG00000019854 Reps1 ENSMUST00000216576 ENSMUSP00000149107 TRANSLATION protein_coding start - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0145 - -2.0 MINOR ENSMUSG00000019854 Reps1 ENSMUST00000150029 ENSMUSP00000119651 TRANSLATION protein_coding start - 1 755.0 6.0 4.98 0.0 0.0 0.0 -4,-5 0.0496 16 -2.0 MINOR ENSMUSG00000019854 Reps1 ENSMUST00000128711 - NO_TRANSLATION retained_intron ENSMUSG00000019854 Reps1 ENSMUST00000126390 ENSMUSP00000123238 TRANSLATION protein_coding - CCDS23710.2 1 795.0 6.0 4.98 12.0 0.0 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:4 ENSMUSG00000019854 Reps1 ENSMUST00000150533 - NO_TRANSLATION retained_intron ENSMUSG00000019854 Reps1 ENSMUST00000154718 ENSMUSP00000119358 TRANSLATION protein_coding - - 5 705.0 6.0 4.98 2.0 0.0 0.0 -4,-5 0.2095 17 12.273 MINOR ENSMUSG00000019854 Reps1 ENSMUST00000155284 ENSMUSP00000119629 TRANSLATION nonsense_mediated_decay - - 5 220.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0055 5 -2.0 MINOR ENSMUSG00000019854 Reps1 ENSMUST00000144287 - NO_TRANSLATION retained_intron ENSMUSG00000019854 Reps1 ENSMUST00000155892 ENSMUSP00000117431 TRANSLATION protein_coding start/stop - 5 240.0 6.0 2.58 0.0 0.0 0.0 -4,-5 0.0078 4 -2.0 MINOR ENSMUSG00000019854 Reps1 ENSMUST00000216413 ENSMUSP00000149418 TRANSLATION nonsense_mediated_decay - - 3 94.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000019854 Reps1 ENSMUST00000164556 ENSMUSP00000130501 TRANSLATION protein_coding - CCDS48507.1 1 768.0 6.0 4.98 10.4 0.0 0.0 -4,-5 0.9404 17 14.565 ALTERNATIVE:1 ENSMUSG00000019854 Reps1 ENSMUST00000155959 ENSMUSP00000114387 TRANSLATION protein_coding start/stop - 5 210.0 6.0 3.18 0.0 0.0 0.0 -4,-7 0.0095 3 -2.0 MINOR ENSMUSG00000004934 Pias4 ENSMUST00000134017 - NO_TRANSLATION retained_intron ENSMUSG00000004934 Pias4 ENSMUST00000129549 - NO_TRANSLATION retained_intron ENSMUSG00000004934 Pias4 ENSMUST00000147436 - NO_TRANSLATION retained_intron ENSMUSG00000004934 Pias4 ENSMUST00000005064 ENSMUSP00000005064 TRANSLATION protein_coding - CCDS35992.1 1 507.0 4.0 6.177 2.7 187.4 0.0 -4,-6 1.0 7 17.0 PRINCIPAL:1 ENSMUSG00000004934 Pias4 ENSMUST00000135765 ENSMUSP00000121361 TRANSLATION protein_coding start/stop - 1 71.0 0.0 1.599 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000152657 ENSMUSP00000115818 TRANSLATION protein_coding stop - 5 110.0 0.0 2.66 0.0 73.9 4.0 0,-5 0.0053 - -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000145079 ENSMUSP00000115483 TRANSLATION protein_coding stop - 5 110.0 0.0 2.66 0.0 73.9 4.0 0,-5 0.0053 - -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000131565 ENSMUSP00000119844 TRANSLATION protein_coding stop - 5 126.0 0.0 3.16 0.0 87.0 4.0 0,-5 0.0048 - -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000006508 ENSMUSP00000006508 TRANSLATION protein_coding - CCDS23927.1 1 568.0 13.0 14.15 12.8 605.9 4.0 0,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000006345 Ggt1 ENSMUST00000148447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006345 Ggt1 ENSMUST00000141062 ENSMUSP00000120686 TRANSLATION protein_coding stop - 3 30.0 0.0 0.0 0.0 0.0 3.0 -1,-5 0.0002 - -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000128886 ENSMUSP00000118261 TRANSLATION protein_coding stop - 5 126.0 0.0 3.16 0.0 87.0 4.0 0,-5 0.0048 - -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000155186 ENSMUSP00000123017 TRANSLATION protein_coding start - 5 130.0 6.0 3.5 0.0 135.2 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000151212 ENSMUSP00000119387 TRANSLATION protein_coding stop - 5 60.0 0.0 1.08 0.0 0.0 3.0 0,-5 0.0036 - -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000143792 ENSMUSP00000117851 TRANSLATION protein_coding stop - 5 237.0 0.0 5.41 0.0 237.8 4.0 0,-5 0.0048 7 -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000124259 ENSMUSP00000122616 TRANSLATION protein_coding stop - 5 235.0 0.0 5.41 0.0 234.7 4.0 0,-5 0.0048 7 -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000156487 - NO_TRANSLATION retained_intron ENSMUSG00000006345 Ggt1 ENSMUST00000143226 ENSMUSP00000115115 TRANSLATION protein_coding stop - 2 190.0 0.0 4.16 0.0 173.9 4.0 0,-5 0.005 4 -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000134503 ENSMUSP00000121312 TRANSLATION protein_coding - CCDS23927.1 1 568.0 13.0 14.15 12.8 605.9 4.0 0,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000006345 Ggt1 ENSMUST00000129020 ENSMUSP00000118825 TRANSLATION protein_coding start/stop - 5 263.0 0.0 6.58 0.0 287.9 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000145928 ENSMUSP00000118852 TRANSLATION protein_coding stop - 5 209.0 0.0 4.66 0.0 193.0 4.0 0,-5 0.0048 5 -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000139459 ENSMUSP00000121774 TRANSLATION protein_coding stop - 5 243.0 0.0 5.41 0.0 245.1 4.0 0,-5 0.0048 7 -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000125770 ENSMUSP00000117968 TRANSLATION protein_coding stop - 2 88.0 0.0 1.83 0.0 40.3 4.0 0,-5 0.0053 - -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000129232 ENSMUSP00000115118 TRANSLATION protein_coding stop - 3 189.0 0.0 4.16 0.0 173.3 4.0 0,-5 0.005 4 -2.0 MINOR ENSMUSG00000006345 Ggt1 ENSMUST00000140219 ENSMUSP00000118870 TRANSLATION protein_coding stop - 5 126.0 0.0 3.16 0.0 87.0 4.0 0,-5 0.0048 - -2.0 MINOR ENSMUSG00000091511 Vmn2r87 ENSMUST00000164227 ENSMUSP00000129215 TRANSLATION protein_coding - CCDS48738.1 5 848.0 3.0 2.4 0.1 382.9 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094496 Or6c66b ENSMUST00000215436 ENSMUSP00000149872 TRANSLATION protein_coding - CCDS24322.1 5 311.0 0.0 1.0 11.5 180.1 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094496 Or6c66b ENSMUST00000076575 ENSMUSP00000096707 TRANSLATION protein_coding - CCDS24322.1 - 311.0 0.0 1.0 11.5 180.1 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034758 Tle6 ENSMUST00000153379 - NO_TRANSLATION retained_intron ENSMUSG00000034758 Tle6 ENSMUST00000124724 - NO_TRANSLATION retained_intron ENSMUSG00000034758 Tle6 ENSMUST00000072020 ENSMUSP00000071905 TRANSLATION protein_coding - CCDS24064.1 1 581.0 0.0 5.55 0.0 0.0 0.0 -4,-7 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000034758 Tle6 ENSMUST00000146239 - NO_TRANSLATION retained_intron ENSMUSG00000034758 Tle6 ENSMUST00000151858 ENSMUSP00000119945 TRANSLATION protein_coding - - 3 101.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0284 - 0.0 MINOR ENSMUSG00000034758 Tle6 ENSMUST00000128278 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034758 Tle6 ENSMUST00000142948 ENSMUSP00000117287 TRANSLATION protein_coding - CCDS83737.1 1 571.0 0.0 5.55 0.0 0.0 0.0 -4,-7 0.4975 1 6.0 ALTERNATIVE:2 ENSMUSG00000034758 Tle6 ENSMUST00000135008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034758 Tle6 ENSMUST00000131530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034758 Tle6 ENSMUST00000134457 - NO_TRANSLATION retained_intron ENSMUSG00000034758 Tle6 ENSMUST00000129282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034758 Tle6 ENSMUST00000149721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034758 Tle6 ENSMUST00000137631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034758 Tle6 ENSMUST00000127546 ENSMUSP00000114738 TRANSLATION protein_coding stop - 3 137.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0288 - -2.0 MINOR ENSMUSG00000039697 Ncoa7 ENSMUST00000213889 - NO_TRANSLATION retained_intron ENSMUSG00000039697 Ncoa7 ENSMUST00000215740 ENSMUSP00000149335 TRANSLATION protein_coding - CCDS23765.1 1 943.0 0.0 4.48 0.4 163.1 0.0 -4,-5 0.4509 15 12.0 MINOR ENSMUSG00000039697 Ncoa7 ENSMUST00000213836 ENSMUSP00000149957 TRANSLATION protein_coding - - 1 932.0 0.0 4.48 0.3 163.1 0.0 -4,-5 0.251 14 12.0 MINOR ENSMUSG00000039697 Ncoa7 ENSMUST00000217644 ENSMUSP00000150671 TRANSLATION protein_coding - - 1 177.0 0.0 3.15 0.0 77.3 0.0 -4,-5 0.0 3 4.194 MINOR ENSMUSG00000039697 Ncoa7 ENSMUST00000215926 ENSMUSP00000150021 TRANSLATION protein_coding - - 1 894.0 0.0 4.48 0.0 153.3 0.0 -4,-5 0.0703 15 11.412 MINOR ENSMUSG00000039697 Ncoa7 ENSMUST00000217398 ENSMUSP00000149244 TRANSLATION nonsense_mediated_decay start - 2 119.0 0.0 0.0 0.0 33.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039697 Ncoa7 ENSMUST00000216172 ENSMUSP00000150981 TRANSLATION protein_coding - CCDS48530.1 1 221.0 0.0 4.48 21.5 131.5 0.0 -4,-5 1.0 4 14.104 PRINCIPAL:1 ENSMUSG00000039697 Ncoa7 ENSMUST00000213897 ENSMUSP00000148944 TRANSLATION nonsense_mediated_decay - - 1 159.0 0.0 2.73 0.0 57.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039697 Ncoa7 ENSMUST00000217138 ENSMUSP00000150461 TRANSLATION protein_coding - - 1 162.0 0.0 2.4 0.0 55.6 0.0 -4,-5 0.0 3 1.842 MINOR ENSMUSG00000039697 Ncoa7 ENSMUST00000092610 ENSMUSP00000090273 TRANSLATION protein_coding - - 1 161.0 0.0 2.4 0.0 55.4 0.0 -4,-5 0.0 3 1.842 MINOR ENSMUSG00000039697 Ncoa7 ENSMUST00000215725 ENSMUSP00000150800 TRANSLATION protein_coding - - 1 271.0 0.0 0.0 0.0 31.6 0.0 -4,-5 0.0009 3 0.0 MINOR ENSMUSG00000039697 Ncoa7 ENSMUST00000068567 ENSMUSP00000066741 TRANSLATION protein_coding - CCDS23765.1 5 943.0 0.0 4.48 0.4 163.1 0.0 -4,-5 0.4509 15 12.0 MINOR ENSMUSG00000060181 Slc35e3 ENSMUST00000079041 ENSMUSP00000078050 TRANSLATION protein_coding - CCDS24195.1 1 313.0 0.0 4.75 18.5 67.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000060181 Slc35e3 ENSMUST00000219482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019796 Lrp11 ENSMUST00000130590 ENSMUSP00000121704 TRANSLATION protein_coding - - 1 438.0 4.0 2.2 0.0 117.6 0.0 1,-2 0.8339 4 12.0 PRINCIPAL:2 ENSMUSG00000019796 Lrp11 ENSMUST00000019931 ENSMUSP00000019931 TRANSLATION protein_coding - CCDS23686.1 1 483.0 4.0 2.2 0.4 117.6 2.0 1,-2 0.565 5 12.0 ALTERNATIVE:2 ENSMUSG00000019796 Lrp11 ENSMUST00000134346 ENSMUSP00000122853 TRANSLATION protein_coding stop - 1 413.0 4.0 2.2 0.0 117.6 0.0 1,-2 0.2072 5 -2.0 MINOR ENSMUSG00000019796 Lrp11 ENSMUST00000135907 ENSMUSP00000122359 TRANSLATION protein_coding start - 2 245.0 0.0 0.32 0.0 88.3 2.0 -4,-2 0.0058 3 -2.0 MINOR ENSMUSG00000019796 Lrp11 ENSMUST00000124961 ENSMUSP00000114479 TRANSLATION protein_coding start/stop - 3 217.0 0.0 1.28 0.0 0.0 2.0 -4,-5 0.0055 1 -2.0 MINOR ENSMUSG00000035852 Misp ENSMUST00000046833 ENSMUSP00000048893 TRANSLATION protein_coding - CCDS23992.1 1 648.0 0.0 0.0 0.1 488.7 0.0 -4,-2 1.0 22 6.0 PRINCIPAL:1 ENSMUSG00000035852 Misp ENSMUST00000219734 ENSMUSP00000151839 TRANSLATION protein_coding stop - 3 117.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000035852 Misp ENSMUST00000169041 ENSMUSP00000130071 TRANSLATION protein_coding - CCDS23992.1 1 648.0 0.0 0.0 0.1 488.7 0.0 -4,-2 1.0 22 6.0 PRINCIPAL:1 ENSMUSG00000035852 Misp ENSMUST00000219305 ENSMUSP00000151529 TRANSLATION protein_coding - CCDS23992.1 1 648.0 0.0 0.0 0.1 488.7 0.0 -4,-2 1.0 22 6.0 PRINCIPAL:1 ENSMUSG00000035852 Misp ENSMUST00000218687 ENSMUSP00000151945 TRANSLATION protein_coding stop - 2 262.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.002 9 -2.0 MINOR ENSMUSG00000035852 Misp ENSMUST00000218531 - NO_TRANSLATION retained_intron ENSMUSG00000025373 Rnf41 ENSMUST00000171342 ENSMUSP00000132751 TRANSLATION protein_coding - CCDS24277.1 1 317.0 12.0 5.41 33.4 329.8 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000025373 Rnf41 ENSMUST00000096386 ENSMUSP00000100869 TRANSLATION protein_coding - CCDS24277.1 1 317.0 12.0 5.41 33.4 329.8 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000025373 Rnf41 ENSMUST00000217826 ENSMUSP00000151260 TRANSLATION nonsense_mediated_decay - - 1 36.0 2.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025373 Rnf41 ENSMUST00000218371 ENSMUSP00000151889 TRANSLATION nonsense_mediated_decay - - 1 122.0 3.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020111 Micu1 ENSMUST00000092508 ENSMUSP00000090166 TRANSLATION protein_coding - CCDS78818.1 1 481.0 9.0 10.1 18.0 51.6 1.0 -4,-2 0.991 5 18.0 ALTERNATIVE:1 ENSMUSG00000020111 Micu1 ENSMUST00000167612 ENSMUSP00000126822 TRANSLATION protein_coding start - 3 78.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020111 Micu1 ENSMUST00000020311 ENSMUSP00000020311 TRANSLATION protein_coding - CCDS78817.1 5 483.0 9.0 10.1 16.8 51.6 1.0 -4,-2 0.9892 5 17.716 ALTERNATIVE:1 ENSMUSG00000020111 Micu1 ENSMUST00000167872 - NO_TRANSLATION retained_intron ENSMUSG00000020111 Micu1 ENSMUST00000170952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020111 Micu1 ENSMUST00000165563 ENSMUSP00000126597 TRANSLATION protein_coding - CCDS35909.1 1 477.0 9.0 10.1 18.0 51.6 1.0 -4,-2 1.0 5 18.0 PRINCIPAL:4 ENSMUSG00000020111 Micu1 ENSMUST00000169842 - NO_TRANSLATION retained_intron ENSMUSG00000020111 Micu1 ENSMUST00000172034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020111 Micu1 ENSMUST00000165405 - NO_TRANSLATION retained_intron ENSMUSG00000020111 Micu1 ENSMUST00000166565 - NO_TRANSLATION retained_intron ENSMUSG00000020111 Micu1 ENSMUST00000171409 ENSMUSP00000131000 TRANSLATION protein_coding stop - 3 234.0 4.0 5.1 0.0 28.0 1.0 -1,-4 0.0052 1 -2.0 MINOR ENSMUSG00000025395 Prim1 ENSMUST00000138330 - NO_TRANSLATION retained_intron ENSMUSG00000025395 Prim1 ENSMUST00000026461 ENSMUSP00000026461 TRANSLATION protein_coding - CCDS36086.1 1 417.0 4.0 10.49 12.4 192.7 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000025395 Prim1 ENSMUST00000135580 - NO_TRANSLATION retained_intron ENSMUSG00000025395 Prim1 ENSMUST00000133285 - NO_TRANSLATION retained_intron ENSMUSG00000020009 Ifngr1 ENSMUST00000110989 - NO_TRANSLATION retained_intron ENSMUSG00000020009 Ifngr1 ENSMUST00000020188 ENSMUSP00000020188 TRANSLATION protein_coding - CCDS35856.1 1 477.0 0.0 3.5 0.3 254.4 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000020009 Ifngr1 ENSMUST00000164591 ENSMUSP00000129309 TRANSLATION nonsense_mediated_decay - - 5 75.0 0.0 1.0 0.0 39.8 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000020009 Ifngr1 ENSMUST00000168074 - NO_TRANSLATION retained_intron ENSMUSG00000020009 Ifngr1 ENSMUST00000171772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020009 Ifngr1 ENSMUST00000172253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006498 Ptbp1 ENSMUST00000168683 ENSMUSP00000132383 TRANSLATION protein_coding stop - 2 55.0 0.0 1.325 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000006498 Ptbp1 ENSMUST00000165724 ENSMUSP00000130749 TRANSLATION nonsense_mediated_decay start - 5 162.0 0.0 2.79 0.0 11.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006498 Ptbp1 ENSMUST00000057343 ENSMUSP00000059481 TRANSLATION nonsense_mediated_decay - - 5 353.0 0.0 7.441 0.0 66.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000006498 Ptbp1 ENSMUST00000165153 - NO_TRANSLATION retained_intron ENSMUSG00000006498 Ptbp1 ENSMUST00000171216 - NO_TRANSLATION retained_intron ENSMUSG00000006498 Ptbp1 ENSMUST00000099958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006498 Ptbp1 ENSMUST00000168216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006498 Ptbp1 ENSMUST00000095457 ENSMUSP00000093109 TRANSLATION protein_coding - CCDS70064.1 1 489.0 0.0 10.611 0.0 222.5 0.0 -4,-5 0.0201 12 8.49 MINOR ENSMUSG00000006498 Ptbp1 ENSMUST00000172282 ENSMUSP00000126192 TRANSLATION protein_coding - CCDS35969.1 1 555.0 0.0 12.011 16.7 234.3 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000006498 Ptbp1 ENSMUST00000168988 - NO_TRANSLATION retained_intron ENSMUSG00000006498 Ptbp1 ENSMUST00000169091 ENSMUSP00000128449 TRANSLATION protein_coding start/stop - 5 107.0 0.0 2.561 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000006498 Ptbp1 ENSMUST00000169580 - NO_TRANSLATION retained_intron ENSMUSG00000006498 Ptbp1 ENSMUST00000169483 ENSMUSP00000127507 TRANSLATION nonsense_mediated_decay - - 3 62.0 0.0 0.561 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006498 Ptbp1 ENSMUST00000164385 - NO_TRANSLATION retained_intron ENSMUSG00000006498 Ptbp1 ENSMUST00000171599 ENSMUSP00000131296 TRANSLATION protein_coding stop - 2 113.0 0.0 0.891 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000006498 Ptbp1 ENSMUST00000165704 ENSMUSP00000127783 TRANSLATION protein_coding - CCDS35970.1 1 529.0 0.0 11.771 9.3 234.3 0.0 -4,-5 0.8303 16 13.636 MINOR ENSMUSG00000035681 Kcnc2 ENSMUST00000092175 ENSMUSP00000089814 TRANSLATION protein_coding - - 1 642.0 0.0 2.29 5.7 210.4 4.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000035681 Kcnc2 ENSMUST00000219607 ENSMUSP00000151870 TRANSLATION protein_coding start/stop - 3 198.0 0.0 0.85 0.0 0.0 2.0 2,-2 0.0051 1 -2.0 MINOR ENSMUSG00000035681 Kcnc2 ENSMUST00000218445 ENSMUSP00000151560 TRANSLATION protein_coding - - 1 240.0 0.0 1.45 0.0 52.6 2.0 -4,-7 0.0 4 3.798 MINOR ENSMUSG00000035681 Kcnc2 ENSMUST00000219301 ENSMUSP00000151579 TRANSLATION protein_coding - CCDS24173.1 1 639.0 0.0 2.29 0.4 210.4 4.0 -4,-6 0.5523 2 12.0 MINOR ENSMUSG00000035681 Kcnc2 ENSMUST00000218827 ENSMUSP00000151995 TRANSLATION protein_coding start - 1 138.0 0.0 0.1 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000045193 Cirbp ENSMUST00000147190 - NO_TRANSLATION retained_intron ENSMUSG00000045193 Cirbp ENSMUST00000154726 ENSMUSP00000121214 TRANSLATION protein_coding stop - 2 108.0 0.0 3.0 0.0 91.4 0.0 -4,-5 0.0024 4 -2.0 MINOR ENSMUSG00000045193 Cirbp ENSMUST00000054666 ENSMUSP00000052642 TRANSLATION nonsense_mediated_decay - - 2 168.0 0.0 3.20445 16.1 91.4 0.0 -4,-5 0.8358 4 -2.0 MINOR ENSMUSG00000045193 Cirbp ENSMUST00000140774 - NO_TRANSLATION retained_intron ENSMUSG00000045193 Cirbp ENSMUST00000151321 - NO_TRANSLATION retained_intron ENSMUSG00000045193 Cirbp ENSMUST00000139935 - NO_TRANSLATION retained_intron ENSMUSG00000045193 Cirbp ENSMUST00000105365 ENSMUSP00000101004 TRANSLATION protein_coding - CCDS35975.1 1 172.0 0.0 3.20445 15.3 91.4 0.0 -4,-5 1.0 5 15.788 PRINCIPAL:1 ENSMUSG00000035835 Plppr3 ENSMUST00000167707 ENSMUSP00000132994 TRANSLATION protein_coding stop - 3 159.0 0.0 0.79 0.0 0.0 3.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000035835 Plppr3 ENSMUST00000163111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035835 Plppr3 ENSMUST00000170910 - NO_TRANSLATION retained_intron ENSMUSG00000035835 Plppr3 ENSMUST00000092325 ENSMUSP00000089979 TRANSLATION protein_coding - CCDS35971.1 1 716.0 0.0 3.261 1.4 51.7 9.0 -4,-7 1.0 12 7.0 PRINCIPAL:2 ENSMUSG00000035835 Plppr3 ENSMUST00000167250 ENSMUSP00000130695 TRANSLATION protein_coding - CCDS48622.1 2 454.0 0.0 3.261 0.0 51.7 9.0 -4,-7 0.3173 8 6.0 ALTERNATIVE:2 ENSMUSG00000035835 Plppr3 ENSMUST00000167897 ENSMUSP00000127972 TRANSLATION protein_coding stop - 3 217.0 0.0 0.79 0.0 0.0 3.0 -4,-7 0.0025 2 -2.0 MINOR ENSMUSG00000035835 Plppr3 ENSMUST00000166023 ENSMUSP00000127171 TRANSLATION protein_coding stop - 3 63.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0008 1 -2.0 MINOR ENSMUSG00000035835 Plppr3 ENSMUST00000165601 ENSMUSP00000128681 TRANSLATION protein_coding stop - 3 266.0 0.0 3.063 0.0 44.8 7.0 -4,-7 0.0302 2 -2.0 MINOR ENSMUSG00000035835 Plppr3 ENSMUST00000166057 - NO_TRANSLATION retained_intron ENSMUSG00000035835 Plppr3 ENSMUST00000113452 - NO_TRANSLATION retained_intron ENSMUSG00000095138 Or6c35 ENSMUST00000204108 ENSMUSP00000145356 TRANSLATION protein_coding - CCDS24314.1 3 311.0 0.0 1.0 11.5 150.9 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095138 Or6c35 ENSMUST00000075613 ENSMUSP00000075041 TRANSLATION protein_coding - CCDS24314.1 - 311.0 0.0 1.0 11.5 150.9 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061315 Naca ENSMUST00000073868 ENSMUSP00000073532 TRANSLATION protein_coding - CCDS24258.1 1 215.0 0.0 1.4 33.4 85.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000061315 Naca ENSMUST00000092048 ENSMUSP00000089680 TRANSLATION protein_coding - CCDS48723.1 1 2187.0 0.0 1.4 0.0 85.1 0.0 -4,-5 0.4738 87 12.0 MINOR ENSMUSG00000032763 Ilvbl ENSMUST00000218215 ENSMUSP00000152037 TRANSLATION protein_coding - - 1 596.0 26.0 14.7 0.0 307.2 4.0 0,-3 0.0367 13 15.246 MINOR ENSMUSG00000032763 Ilvbl ENSMUST00000218763 ENSMUSP00000151301 TRANSLATION protein_coding stop - 5 63.0 0.0 1.3 0.0 0.0 4.0 0,-3 0.0061 1 -2.0 MINOR ENSMUSG00000032763 Ilvbl ENSMUST00000218787 ENSMUSP00000151300 TRANSLATION protein_coding stop - 2 125.0 7.0 3.3 0.0 74.5 4.0 0,-3 0.0044 3 -2.0 MINOR ENSMUSG00000032763 Ilvbl ENSMUST00000105384 ENSMUSP00000101023 TRANSLATION protein_coding - CCDS23966.1 1 632.0 26.0 15.55 8.8 324.8 4.0 0,-3 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000032763 Ilvbl ENSMUST00000219971 - NO_TRANSLATION retained_intron ENSMUSG00000032763 Ilvbl ENSMUST00000218271 ENSMUSP00000151480 TRANSLATION protein_coding - - 1 401.0 9.0 10.05 0.0 226.6 4.0 0,-3 0.006 11 0.108 MINOR ENSMUSG00000032763 Ilvbl ENSMUST00000218875 ENSMUSP00000151521 TRANSLATION protein_coding - - 1 531.0 15.0 12.8825 0.0 256.9 4.0 0,-3 0.007 12 2.592 MINOR ENSMUSG00000032763 Ilvbl ENSMUST00000218885 ENSMUSP00000151263 TRANSLATION protein_coding - CCDS23966.1 1 632.0 26.0 15.55 8.8 324.8 4.0 0,-3 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000032763 Ilvbl ENSMUST00000218061 ENSMUSP00000151470 TRANSLATION protein_coding stop - 2 79.0 3.0 1.8 0.0 0.0 4.0 0,-3 0.0063 1 -2.0 MINOR ENSMUSG00000032763 Ilvbl ENSMUST00000218670 - NO_TRANSLATION retained_intron ENSMUSG00000032763 Ilvbl ENSMUST00000219588 ENSMUSP00000151967 TRANSLATION protein_coding start - 1 328.0 1.0 7.75 0.0 132.9 0.0 -3,-6 0.0 7 -2.0 MINOR ENSMUSG00000032763 Ilvbl ENSMUST00000220430 ENSMUSP00000151674 TRANSLATION protein_coding - - 1 416.0 9.0 10.05 0.0 226.6 4.0 0,-3 0.006 11 0.108 MINOR ENSMUSG00000035242 Oaz1 ENSMUST00000179620 ENSMUSP00000136134 TRANSLATION protein_coding stop - 5 177.0 0.0 3.82 0.0 75.5 0.0 3,-2 0.0445 - -2.0 MINOR ENSMUSG00000035242 Oaz1 ENSMUST00000177850 ENSMUSP00000136469 TRANSLATION protein_coding stop - 5 210.0 0.0 3.49 0.0 73.2 0.0 -4,-7 0.009 1 -2.0 MINOR ENSMUSG00000035242 Oaz1 ENSMUST00000180036 ENSMUSP00000137400 TRANSLATION protein_coding - CCDS56736.1 5 227.0 0.0 4.15 9.1 75.5 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000035242 Oaz1 ENSMUST00000179894 - NO_TRANSLATION retained_intron ENSMUSG00000035242 Oaz1 ENSMUST00000179172 ENSMUSP00000136186 TRANSLATION protein_coding - - 5 166.0 0.0 1.566 0.0 0.0 0.0 -4,-7 0.0 1 0.834 MINOR ENSMUSG00000035242 Oaz1 ENSMUST00000179341 ENSMUSP00000136251 TRANSLATION protein_coding start - 2 49.0 0.0 1.396 0.0 43.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020331 Hcn2 ENSMUST00000099513 ENSMUSP00000097113 TRANSLATION protein_coding - CCDS23986.1 1 863.0 16.0 6.5 0.4 212.4 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000020027 Socs2 ENSMUST00000134918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020027 Socs2 ENSMUST00000155148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020027 Socs2 ENSMUST00000130784 - NO_TRANSLATION retained_intron ENSMUSG00000020027 Socs2 ENSMUST00000135822 ENSMUSP00000118720 TRANSLATION protein_coding stop - 3 80.0 0.0 1.76 0.0 29.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020027 Socs2 ENSMUST00000020215 ENSMUSP00000020215 TRANSLATION protein_coding - CCDS24136.1 1 198.0 0.0 2.76 14.0 88.5 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020027 Socs2 ENSMUST00000170690 ENSMUSP00000129331 TRANSLATION protein_coding - CCDS24136.1 3 198.0 0.0 2.76 14.0 88.5 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020027 Socs2 ENSMUST00000119917 ENSMUSP00000113378 TRANSLATION protein_coding - CCDS24136.1 1 198.0 0.0 2.76 14.0 88.5 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020027 Socs2 ENSMUST00000172070 ENSMUSP00000131875 TRANSLATION protein_coding - CCDS24136.1 2 198.0 0.0 2.76 14.0 88.5 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020027 Socs2 ENSMUST00000139210 ENSMUSP00000121305 TRANSLATION nonsense_mediated_decay start - 1 201.0 0.0 2.16 0.0 88.5 0.0 -4,-5 0.0584 - -2.0 MINOR ENSMUSG00000020027 Socs2 ENSMUST00000150432 ENSMUSP00000117785 TRANSLATION protein_coding stop - 2 70.0 0.0 1.43 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020027 Socs2 ENSMUST00000128854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020027 Socs2 ENSMUST00000145847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020027 Socs2 ENSMUST00000128363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020027 Socs2 ENSMUST00000129942 ENSMUSP00000117576 TRANSLATION protein_coding stop - 3 62.0 0.0 1.1 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005355 Casp14 ENSMUST00000219237 ENSMUSP00000151657 TRANSLATION protein_coding - CCDS23969.1 5 257.0 4.0 2.58 0.0 129.8 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000005355 Casp14 ENSMUST00000005488 ENSMUSP00000005488 TRANSLATION protein_coding - CCDS23969.1 1 257.0 4.0 2.58 0.0 129.8 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000087651 1500009L16Rik ENSMUST00000150459 ENSMUSP00000129542 TRANSLATION protein_coding - CCDS48656.1 1 63.0 0.0 0.75 17.4 117.9 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000087651 1500009L16Rik ENSMUST00000218623 ENSMUSP00000151432 TRANSLATION protein_coding start - 3 61.0 0.0 0.75 0.0 85.4 0.0 -4,-5 0.0224 3 -2.0 MINOR ENSMUSG00000087651 1500009L16Rik ENSMUST00000218196 - NO_TRANSLATION retained_intron ENSMUSG00000038602 Slc35f1 ENSMUST00000105473 ENSMUSP00000101113 TRANSLATION protein_coding - CCDS23843.1 1 408.0 0.0 5.2 0.4 494.3 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000025422 Agap2 ENSMUST00000217941 ENSMUSP00000151946 TRANSLATION protein_coding - - 1 1166.0 20.0 9.55 1.5 218.1 0.0 -3,0 0.4969 21 18.286 MINOR ENSMUSG00000025422 Agap2 ENSMUST00000039259 ENSMUSP00000043466 TRANSLATION protein_coding - CCDS24228.1 1 1186.0 20.0 9.55 0.0 218.1 0.0 -3,0 0.4199 23 18.0 MINOR ENSMUSG00000025422 Agap2 ENSMUST00000239120 ENSMUSP00000158894 TRANSLATION protein_coding - - - 856.0 20.0 9.55 4.5 218.1 0.0 -4,-1 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000020225 Tmbim4 ENSMUST00000156247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020225 Tmbim4 ENSMUST00000141206 ENSMUSP00000121824 TRANSLATION nonsense_mediated_decay - - 1 93.0 0.0 1.6 0.0 0.0 3.0 -4,-6 0.0017 - -2.0 MINOR ENSMUSG00000020225 Tmbim4 ENSMUST00000156877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020225 Tmbim4 ENSMUST00000020446 ENSMUSP00000020446 TRANSLATION protein_coding - CCDS24205.1 1 238.0 0.0 5.85 25.3 159.1 8.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020225 Tmbim4 ENSMUST00000148678 - NO_TRANSLATION retained_intron ENSMUSG00000020225 Tmbim4 ENSMUST00000134797 ENSMUSP00000119967 TRANSLATION protein_coding - - 1 120.0 0.0 2.7 0.0 35.6 5.0 -4,-5 0.0037 - 0.0 MINOR ENSMUSG00000020225 Tmbim4 ENSMUST00000134203 - NO_TRANSLATION retained_intron ENSMUSG00000020225 Tmbim4 ENSMUST00000123802 - NO_TRANSLATION retained_intron ENSMUSG00000020225 Tmbim4 ENSMUST00000145015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020225 Tmbim4 ENSMUST00000135794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009654 Oit3 ENSMUST00000162493 - NO_TRANSLATION retained_intron ENSMUSG00000009654 Oit3 ENSMUST00000009798 ENSMUSP00000009798 TRANSLATION protein_coding - CCDS23865.1 1 546.0 3.0 3.068 11.6 227.7 0.0 2,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000058537 AW822073 ENSMUST00000204003 ENSMUSP00000144714 TRANSLATION protein_coding - - - 652.0 0.0 0.0 0.0 107.9 0.0 -4,-5 0.7579 - 6.0 PRINCIPAL:1 ENSMUSG00000058537 AW822073 ENSMUST00000075305 ENSMUSP00000074777 TRANSLATION protein_coding start - - 184.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039824 Myl6b ENSMUST00000026428 ENSMUSP00000026428 TRANSLATION protein_coding - CCDS24279.1 1 207.0 15.0 3.41 13.7 0.0 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000039824 Myl6b ENSMUST00000218250 - NO_TRANSLATION retained_intron ENSMUSG00000020214 Glipr1l2 ENSMUST00000148897 ENSMUSP00000122771 TRANSLATION protein_coding - CCDS83755.1 1 226.0 0.0 3.55 0.1 61.4 0.0 -2,0 0.1052 1 9.342 MINOR ENSMUSG00000020214 Glipr1l2 ENSMUST00000020434 ENSMUSP00000020434 TRANSLATION protein_coding - CCDS24171.1 1 332.0 0.0 4.88 0.0 61.4 0.0 -2,0 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000035890 Rnf126 ENSMUST00000219189 - NO_TRANSLATION retained_intron ENSMUSG00000035890 Rnf126 ENSMUST00000047203 ENSMUSP00000039486 TRANSLATION protein_coding - CCDS23989.1 1 313.0 8.0 4.14 22.9 81.4 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000035890 Rnf126 ENSMUST00000218770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000112653 Gm36176 ENSMUST00000218749 ENSMUSP00000152023 TRANSLATION protein_coding - - - 158.0 0.0 0.0 0.0 48.6 0.0 -4,-5 0.7051 - 6.0 PRINCIPAL:1 ENSMUSG00000047631 Apof ENSMUST00000050901 ENSMUSP00000050300 TRANSLATION protein_coding - - 1 315.0 0.0 0.0 0.0 302.7 0.0 4,-1 0.7745 4 2.0 PRINCIPAL:2 ENSMUSG00000047631 Apof ENSMUST00000238970 ENSMUSP00000158988 TRANSLATION protein_coding - CCDS24268.1 - 326.0 0.0 0.0 0.0 302.7 0.0 -1,-3 0.3765 4 2.0 ALTERNATIVE:2 ENSMUSG00000048756 Foxo3 ENSMUST00000056974 ENSMUSP00000050683 TRANSLATION protein_coding - CCDS23810.1 1 672.0 0.0 1.6 11.0 272.9 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000048756 Foxo3 ENSMUST00000105501 ENSMUSP00000101140 TRANSLATION protein_coding - - 1 244.0 0.0 0.5 0.0 42.0 0.0 -4,-5 0.0 1 1.872 MINOR ENSMUSG00000048756 Foxo3 ENSMUST00000105502 ENSMUSP00000101141 TRANSLATION protein_coding - CCDS23810.1 1 672.0 0.0 1.6 11.0 272.9 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000048756 Foxo3 ENSMUST00000175881 ENSMUSP00000135380 TRANSLATION protein_coding - CCDS23810.1 1 672.0 0.0 1.6 11.0 272.9 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000048756 Foxo3 ENSMUST00000177542 ENSMUSP00000135355 TRANSLATION protein_coding stop - 3 103.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000090112 Shprh ENSMUST00000159810 ENSMUSP00000125457 TRANSLATION nonsense_mediated_decay - - 1 1031.0 11.0 3.207 0.0 465.9 0.0 -4,-7 0.0441 12 -2.0 MINOR ENSMUSG00000090112 Shprh ENSMUST00000161858 - NO_TRANSLATION retained_intron ENSMUSG00000090112 Shprh ENSMUST00000054814 ENSMUSP00000125849 TRANSLATION protein_coding - CCDS35839.1 1 1616.0 11.0 9.987 0.0 496.3 0.0 -4,-7 0.3574 19 16.668 MINOR ENSMUSG00000090112 Shprh ENSMUST00000160461 ENSMUSP00000125127 TRANSLATION nonsense_mediated_decay start - 3 218.0 8.0 0.5 0.0 69.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000090112 Shprh ENSMUST00000161910 - NO_TRANSLATION retained_intron ENSMUSG00000090112 Shprh ENSMUST00000159553 - NO_TRANSLATION retained_intron ENSMUSG00000090112 Shprh ENSMUST00000044053 ENSMUSP00000039422 TRANSLATION protein_coding - CCDS35838.1 1 1674.0 11.0 10.652 0.3 496.3 0.0 -4,-7 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000090112 Shprh ENSMUST00000159541 ENSMUSP00000132870 TRANSLATION protein_coding - CCDS70003.1 1 1646.0 11.0 10.027 0.0 496.3 0.0 -4,-7 0.4278 19 16.752 MINOR ENSMUSG00000040054 Baz2a ENSMUST00000220049 ENSMUSP00000151961 TRANSLATION protein_coding - CCDS36088.1 5 1887.0 8.0 5.25 0.0 273.4 0.0 -4,-5 1.0 19 14.0 PRINCIPAL:4 ENSMUSG00000040054 Baz2a ENSMUST00000238829 ENSMUSP00000159065 TRANSLATION protein_coding - - - 1889.0 8.0 5.25 0.0 273.4 0.0 -4,-5 0.7617 19 14.0 ALTERNATIVE:2 ENSMUSG00000040054 Baz2a ENSMUST00000217851 ENSMUSP00000151445 TRANSLATION protein_coding - - 5 1890.0 8.0 5.25 0.0 273.4 0.0 -4,-5 0.7644 19 14.0 ALTERNATIVE:2 ENSMUSG00000040054 Baz2a ENSMUST00000219072 ENSMUSP00000151308 TRANSLATION protein_coding stop - 1 763.0 0.0 3.25 0.0 72.2 0.0 -4,-5 0.0047 4 -2.0 MINOR ENSMUSG00000040054 Baz2a ENSMUST00000170054 ENSMUSP00000129803 TRANSLATION protein_coding - - 5 1888.0 8.0 5.25 0.0 273.4 0.0 -4,-5 0.7587 19 14.0 ALTERNATIVE:2 ENSMUSG00000040054 Baz2a ENSMUST00000219082 - NO_TRANSLATION retained_intron ENSMUSG00000040054 Baz2a ENSMUST00000218772 - NO_TRANSLATION retained_intron ENSMUSG00000040054 Baz2a ENSMUST00000045621 ENSMUSP00000044359 TRANSLATION protein_coding - CCDS36088.1 5 1887.0 8.0 5.25 0.0 273.4 0.0 -4,-5 1.0 19 14.0 PRINCIPAL:4 ENSMUSG00000040054 Baz2a ENSMUST00000219980 - NO_TRANSLATION retained_intron ENSMUSG00000035873 Pawr ENSMUST00000218332 ENSMUSP00000151457 TRANSLATION protein_coding - - 1 289.0 0.0 2.35 0.0 0.0 0.0 -4,-5 0.0351 12 6.0 ALTERNATIVE:2 ENSMUSG00000035873 Pawr ENSMUST00000095313 ENSMUSP00000092951 TRANSLATION protein_coding - CCDS36053.1 1 333.0 0.0 2.35 2.8 0.0 0.0 -4,-5 1.0 12 7.0 PRINCIPAL:2 ENSMUSG00000051236 Msrb3 ENSMUST00000130950 ENSMUSP00000115269 TRANSLATION protein_coding - - 3 114.0 7.0 2.15 0.0 92.6 0.0 -4,-2 0.0 1 7.158 MINOR ENSMUSG00000051236 Msrb3 ENSMUST00000139961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051236 Msrb3 ENSMUST00000092143 ENSMUSP00000089781 TRANSLATION protein_coding - CCDS24208.1 1 186.0 9.0 4.23 25.7 181.8 0.0 -4,-2 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000020163 Uqcr11 ENSMUST00000020372 ENSMUSP00000020372 TRANSLATION protein_coding - CCDS35981.1 1 56.0 0.0 1.5 24.7 111.7 0.0 -3,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000020163 Uqcr11 ENSMUST00000138428 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020163 Uqcr11 ENSMUST00000141683 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020241 Col6a2 ENSMUST00000137365 - NO_TRANSLATION retained_intron ENSMUSG00000020241 Col6a2 ENSMUST00000105413 ENSMUSP00000101053 TRANSLATION protein_coding - CCDS83715.1 1 933.0 9.0 4.97 0.4 304.4 0.0 4,-1 0.2001 17 11.358 MINOR ENSMUSG00000020241 Col6a2 ENSMUST00000001181 ENSMUSP00000001181 TRANSLATION protein_coding - CCDS23951.1 1 1034.0 9.0 5.29 0.4 440.7 0.0 4,-1 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000063216 Or7a35 ENSMUST00000080730 ENSMUSP00000079555 TRANSLATION protein_coding - CCDS23974.1 - 319.0 0.0 1.0 5.6 166.9 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063216 Or7a35 ENSMUST00000216030 ENSMUSP00000149241 TRANSLATION protein_coding - CCDS23974.1 3 319.0 0.0 1.0 5.6 166.9 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040441 Slc26a10 ENSMUST00000095270 ENSMUSP00000092904 TRANSLATION protein_coding - CCDS48714.1 5 684.0 0.0 8.04 0.1 398.4 7.0 -4,-5 0.6146 - 8.0 ALTERNATIVE:2 ENSMUSG00000040441 Slc26a10 ENSMUST00000218658 - NO_TRANSLATION retained_intron ENSMUSG00000040441 Slc26a10 ENSMUST00000222911 ENSMUSP00000152871 TRANSLATION protein_coding - - 5 676.0 0.0 8.04 0.7 398.4 7.0 -4,-5 0.8096 - 8.0 PRINCIPAL:4 ENSMUSG00000040441 Slc26a10 ENSMUST00000238577 - NO_TRANSLATION retained_intron ENSMUSG00000040441 Slc26a10 ENSMUST00000221174 - NO_TRANSLATION retained_intron ENSMUSG00000040441 Slc26a10 ENSMUST00000220327 - NO_TRANSLATION retained_intron ENSMUSG00000037876 Jmjd1c ENSMUST00000173661 - NO_TRANSLATION retained_intron ENSMUSG00000037876 Jmjd1c ENSMUST00000174317 ENSMUSP00000134246 TRANSLATION protein_coding stop - 1 744.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0116 3 -2.0 MINOR ENSMUSG00000037876 Jmjd1c ENSMUST00000173236 - NO_TRANSLATION retained_intron ENSMUSG00000037876 Jmjd1c ENSMUST00000173689 ENSMUSP00000133700 TRANSLATION protein_coding - CCDS56708.1 2 2350.0 0.0 8.2 0.1 39.4 0.0 -4,-2 1.0 18 6.0 PRINCIPAL:2 ENSMUSG00000037876 Jmjd1c ENSMUST00000174062 - NO_TRANSLATION retained_intron ENSMUSG00000037876 Jmjd1c ENSMUST00000173295 - NO_TRANSLATION retained_intron ENSMUSG00000037876 Jmjd1c ENSMUST00000051446 ENSMUSP00000056227 TRANSLATION protein_coding - CCDS56707.1 5 2530.0 0.0 8.2 0.4 39.4 0.0 -4,-5 0.5175 17 6.0 ALTERNATIVE:2 ENSMUSG00000037876 Jmjd1c ENSMUST00000173949 - NO_TRANSLATION retained_intron ENSMUSG00000037876 Jmjd1c ENSMUST00000174408 ENSMUSP00000134551 TRANSLATION protein_coding - - 5 2531.0 0.0 8.2 0.4 39.4 0.0 -4,-5 0.3101 18 6.0 ALTERNATIVE:2 ENSMUSG00000037876 Jmjd1c ENSMUST00000173762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037876 Jmjd1c ENSMUST00000219563 - NO_TRANSLATION retained_intron ENSMUSG00000037876 Jmjd1c ENSMUST00000173187 - NO_TRANSLATION retained_intron ENSMUSG00000036112 Metap2 ENSMUST00000047910 ENSMUSP00000048285 TRANSLATION protein_coding - CCDS48673.1 1 478.0 9.0 9.64 16.5 156.7 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000036112 Metap2 ENSMUST00000181740 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036112 Metap2 ENSMUST00000180375 ENSMUSP00000137911 TRANSLATION protein_coding start/stop - 5 242.0 5.0 4.56 0.0 75.7 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000036112 Metap2 ENSMUST00000181236 - NO_TRANSLATION retained_intron ENSMUSG00000036112 Metap2 ENSMUST00000180688 ENSMUSP00000137652 TRANSLATION protein_coding stop - 3 233.0 3.0 3.08 0.0 43.9 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000036112 Metap2 ENSMUST00000180840 ENSMUSP00000138006 TRANSLATION protein_coding - CCDS48673.1 1 478.0 9.0 9.64 16.5 156.7 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000036112 Metap2 ENSMUST00000181091 ENSMUSP00000137904 TRANSLATION protein_coding - - 1 455.0 9.0 8.89 1.0 156.7 0.0 -4,-5 0.0924 15 16.5 MINOR ENSMUSG00000036112 Metap2 ENSMUST00000181217 ENSMUSP00000138083 TRANSLATION protein_coding - - 1 488.0 9.0 9.64 0.0 156.7 0.0 -4,-5 0.07 17 18.0 MINOR ENSMUSG00000036112 Metap2 ENSMUST00000181104 - NO_TRANSLATION retained_intron ENSMUSG00000036112 Metap2 ENSMUST00000216232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036112 Metap2 ENSMUST00000180739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036112 Metap2 ENSMUST00000181009 - NO_TRANSLATION retained_intron ENSMUSG00000036112 Metap2 ENSMUST00000181434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036112 Metap2 ENSMUST00000181894 - NO_TRANSLATION retained_intron ENSMUSG00000036112 Metap2 ENSMUST00000215642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036112 Metap2 ENSMUST00000181442 - NO_TRANSLATION retained_intron ENSMUSG00000036112 Metap2 ENSMUST00000180392 ENSMUSP00000137681 TRANSLATION nonsense_mediated_decay start - 5 186.0 5.0 4.896 0.0 119.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000036112 Metap2 ENSMUST00000181470 ENSMUSP00000138050 TRANSLATION protein_coding start - 2 106.0 4.0 3.33 0.0 45.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000047025 Ccer1 ENSMUST00000060703 ENSMUSP00000050554 TRANSLATION protein_coding - CCDS24144.1 - 403.0 0.0 0.0 0.1 396.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000019899 Lama2 ENSMUST00000189575 ENSMUSP00000140716 TRANSLATION protein_coding - - 5 1349.0 0.0 13.537 0.0 815.2 0.0 3,-2 0.0725 49 0.0 MINOR ENSMUSG00000019899 Lama2 ENSMUST00000186965 - NO_TRANSLATION retained_intron ENSMUSG00000019899 Lama2 ENSMUST00000186279 - NO_TRANSLATION retained_intron ENSMUSG00000019899 Lama2 ENSMUST00000185839 - NO_TRANSLATION retained_intron ENSMUSG00000019899 Lama2 ENSMUST00000219763 ENSMUSP00000151741 TRANSLATION protein_coding start - 5 1127.0 16.0 17.23 0.0 669.8 0.0 -4,-5 0.0533 30 -2.0 MINOR ENSMUSG00000019899 Lama2 ENSMUST00000092639 ENSMUSP00000090304 TRANSLATION protein_coding - CCDS48526.1 5 3118.0 16.0 35.787 1.1 1868.6 0.0 3,-2 1.0 98 19.0 PRINCIPAL:1 ENSMUSG00000019899 Lama2 ENSMUST00000188963 - NO_TRANSLATION retained_intron ENSMUSG00000019899 Lama2 ENSMUST00000239098 ENSMUSP00000158963 TRANSLATION protein_coding start/stop - - 256.0 0.0 2.45 0.0 143.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000019899 Lama2 ENSMUST00000187535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020051 Pah ENSMUST00000020241 ENSMUSP00000020241 TRANSLATION protein_coding - CCDS24102.1 1 453.0 19.0 11.58 12.1 612.5 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000020051 Pah ENSMUST00000219813 ENSMUSP00000151566 TRANSLATION protein_coding - - 3 81.0 2.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000020051 Pah ENSMUST00000218573 ENSMUSP00000151849 TRANSLATION protein_coding start - 3 117.0 5.0 3.33 0.0 36.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000020051 Pah ENSMUST00000217864 ENSMUSP00000151368 TRANSLATION protein_coding stop - 3 174.0 6.0 3.7 0.0 291.3 0.0 -4,-2 0.0007 6 -2.0 MINOR ENSMUSG00000060733 Ipmk ENSMUST00000141153 - NO_TRANSLATION retained_intron ENSMUSG00000060733 Ipmk ENSMUST00000147277 ENSMUSP00000120073 TRANSLATION nonsense_mediated_decay - - 1 216.0 9.0 3.5 0.0 104.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000060733 Ipmk ENSMUST00000141984 ENSMUSP00000120612 TRANSLATION nonsense_mediated_decay start - 1 23.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060733 Ipmk ENSMUST00000121446 ENSMUSP00000112568 TRANSLATION protein_coding - CCDS83711.1 5 397.0 12.0 4.75 0.4 225.1 0.0 -4,-6 0.5973 5 12.0 ALTERNATIVE:2 ENSMUSG00000060733 Ipmk ENSMUST00000079252 ENSMUSP00000078240 TRANSLATION protein_coding - CCDS23918.1 1 396.0 12.0 4.75 0.4 225.1 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:2 ENSMUSG00000060733 Ipmk ENSMUST00000145521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060733 Ipmk ENSMUST00000118381 ENSMUSP00000113083 TRANSLATION protein_coding - - 1 216.0 9.0 3.5 0.0 104.6 0.0 -4,-6 0.0 4 7.5 MINOR ENSMUSG00000025408 Ddit3 ENSMUST00000139091 ENSMUSP00000118339 TRANSLATION protein_coding stop - 2 160.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0584 - -2.0 MINOR ENSMUSG00000025408 Ddit3 ENSMUST00000134686 - NO_TRANSLATION retained_intron ENSMUSG00000025408 Ddit3 ENSMUST00000026475 ENSMUSP00000026475 TRANSLATION protein_coding - CCDS24236.1 1 168.0 0.0 0.2 11.0 0.0 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000020153 Ndufs7 ENSMUST00000155523 - NO_TRANSLATION retained_intron ENSMUSG00000020153 Ndufs7 ENSMUST00000157063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020153 Ndufs7 ENSMUST00000105364 ENSMUSP00000101003 TRANSLATION protein_coding - CCDS24015.1 5 224.0 13.0 4.3 0.1 84.3 0.0 -3,1 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000020153 Ndufs7 ENSMUST00000152939 - NO_TRANSLATION retained_intron ENSMUSG00000020153 Ndufs7 ENSMUST00000155336 - NO_TRANSLATION retained_intron ENSMUSG00000020153 Ndufs7 ENSMUST00000020361 ENSMUSP00000020361 TRANSLATION protein_coding - CCDS24015.1 1 224.0 13.0 4.3 0.1 84.3 0.0 -3,1 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000019872 Smpdl3a ENSMUST00000125076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019872 Smpdl3a ENSMUST00000020022 ENSMUSP00000020022 TRANSLATION protein_coding - CCDS23857.1 1 445.0 9.0 7.85 1.2 62.0 0.0 4,-1 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000019872 Smpdl3a ENSMUST00000151623 ENSMUSP00000122041 TRANSLATION protein_coding stop - 3 104.0 4.0 1.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000001786 Fbxo7 ENSMUST00000001837 ENSMUSP00000001837 TRANSLATION nonsense_mediated_decay - - 5 56.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000001786 Fbxo7 ENSMUST00000117597 ENSMUSP00000113263 TRANSLATION protein_coding - CCDS83740.1 1 442.0 0.0 3.36 1.5 88.6 0.0 -4,-5 0.4012 4 8.207 MINOR ENSMUSG00000001786 Fbxo7 ENSMUST00000130320 ENSMUSP00000120840 TRANSLATION protein_coding - CCDS24095.1 1 523.0 0.0 3.36 8.2 88.6 0.0 -4,-7 1.0 8 11.0 PRINCIPAL:3 ENSMUSG00000001786 Fbxo7 ENSMUST00000130383 - NO_TRANSLATION retained_intron ENSMUSG00000001786 Fbxo7 ENSMUST00000134490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001786 Fbxo7 ENSMUST00000120344 ENSMUSP00000113222 TRANSLATION protein_coding - CCDS78875.1 1 444.0 0.0 3.36 7.3 88.6 0.0 -4,-5 0.8203 4 10.625 ALTERNATIVE:1 ENSMUSG00000001786 Fbxo7 ENSMUST00000147168 ENSMUSP00000119334 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000094144 Gm21312 ENSMUST00000181239 ENSMUSP00000137776 TRANSLATION protein_coding - - 3 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000094144 Gm21312 ENSMUST00000180889 ENSMUSP00000137961 TRANSLATION protein_coding - - 2 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000069707 Taar4 ENSMUST00000092660 ENSMUSP00000090330 TRANSLATION protein_coding - CCDS23737.1 - 347.0 0.0 1.0 8.2 206.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000107822 Or10b1 ENSMUST00000204477 ENSMUSP00000154751 TRANSLATION protein_coding - - - 318.0 0.0 1.0 0.3 174.6 0.0 -4,-5 0.7964 - 12.0 PRINCIPAL:1 ENSMUSG00000063457 Rps15 ENSMUST00000068408 ENSMUSP00000069004 TRANSLATION protein_coding - CCDS35978.1 1 145.0 0.0 2.75 24.2 137.6 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000063457 Rps15 ENSMUST00000062674 ENSMUSP00000100997 TRANSLATION protein_coding - CCDS78858.1 1 118.0 0.0 2.0 3.2 137.6 0.0 -4,-2 0.2502 3 10.742 MINOR ENSMUSG00000020178 Adora2a ENSMUST00000219322 ENSMUSP00000152012 TRANSLATION protein_coding stop - 3 23.0 0.0 0.5 0.0 0.0 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000020178 Adora2a ENSMUST00000105420 ENSMUSP00000101060 TRANSLATION protein_coding - CCDS23924.1 3 410.0 0.0 3.5 0.4 205.8 7.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000020178 Adora2a ENSMUST00000219044 ENSMUSP00000151503 TRANSLATION protein_coding stop - 3 84.0 0.0 1.75 0.0 44.9 2.0 3,-2 0.0014 - -2.0 MINOR ENSMUSG00000020178 Adora2a ENSMUST00000217703 ENSMUSP00000151245 TRANSLATION protein_coding stop - 2 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0318 - -2.0 MINOR ENSMUSG00000019841 Rev3l ENSMUST00000127726 - NO_TRANSLATION retained_intron ENSMUSG00000019841 Rev3l ENSMUST00000145333 - NO_TRANSLATION retained_intron ENSMUSG00000019841 Rev3l ENSMUST00000019986 ENSMUSP00000019986 TRANSLATION protein_coding - CCDS23790.1 1 3122.0 8.0 11.337 0.3 1015.4 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000019841 Rev3l ENSMUST00000131186 ENSMUSP00000117456 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0097 - -2.0 MINOR ENSMUSG00000019841 Rev3l ENSMUST00000123103 - NO_TRANSLATION retained_intron ENSMUSG00000019841 Rev3l ENSMUST00000139803 ENSMUSP00000115630 TRANSLATION nonsense_mediated_decay start - 5 807.0 2.0 5.465 0.0 140.2 0.0 -4,-5 0.0031 2 -2.0 MINOR ENSMUSG00000019989 Enpp3 ENSMUST00000218619 - NO_TRANSLATION retained_intron ENSMUSG00000019989 Enpp3 ENSMUST00000217903 ENSMUSP00000152033 TRANSLATION nonsense_mediated_decay start - 5 140.0 0.0 2.0 0.0 74.3 0.0 3,-2 0.0 3 -2.0 MINOR ENSMUSG00000019989 Enpp3 ENSMUST00000020169 ENSMUSP00000020169 TRANSLATION protein_coding - CCDS23752.1 1 874.0 14.0 20.66 6.2 387.5 2.0 -4,-7 1.0 25 20.0 PRINCIPAL:1 ENSMUSG00000019989 Enpp3 ENSMUST00000219861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019989 Enpp3 ENSMUST00000219968 ENSMUSP00000151646 TRANSLATION protein_coding stop - 3 22.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019989 Enpp3 ENSMUST00000218044 ENSMUSP00000151393 TRANSLATION protein_coding - - 1 195.0 1.0 4.028 0.0 74.3 2.0 -4,-7 0.0004 6 0.0 MINOR ENSMUSG00000019989 Enpp3 ENSMUST00000220209 ENSMUSP00000151518 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000019989 Enpp3 ENSMUST00000218343 ENSMUSP00000151540 TRANSLATION nonsense_mediated_decay start - 1 281.0 1.0 6.25 0.0 0.0 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000019989 Enpp3 ENSMUST00000219342 ENSMUSP00000151371 TRANSLATION protein_coding stop - 3 64.0 2.0 2.0 0.0 93.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025362 Rps26 ENSMUST00000219773 - NO_TRANSLATION retained_intron ENSMUSG00000025362 Rps26 ENSMUST00000026420 ENSMUSP00000026420 TRANSLATION protein_coding - CCDS36090.1 1 115.0 0.0 2.198 26.7 184.0 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025362 Rps26 ENSMUST00000219591 - NO_TRANSLATION retained_intron ENSMUSG00000044025 Or6c75 ENSMUST00000218901 ENSMUSP00000151759 TRANSLATION protein_coding - CCDS24320.1 - 322.0 0.0 1.0 0.3 178.7 7.0 -4,-7 0.4777 - 12.0 MINOR ENSMUSG00000044025 Or6c75 ENSMUST00000215067 ENSMUSP00000149037 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 11.5 178.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044025 Or6c75 ENSMUST00000056002 ENSMUSP00000052235 TRANSLATION protein_coding - - - 314.0 0.0 1.0 11.5 178.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044025 Or6c75 ENSMUST00000203966 ENSMUSP00000145450 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 11.5 178.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003923 Tfam ENSMUST00000121685 ENSMUSP00000113581 TRANSLATION protein_coding - - 2 199.0 0.0 5.16 0.0 129.0 0.0 -4,-7 0.0879 9 7.736 MINOR ENSMUSG00000003923 Tfam ENSMUST00000105432 ENSMUSP00000101072 TRANSLATION protein_coding - - 1 215.0 0.0 5.292 0.0 129.0 0.0 -4,-7 0.0273 9 8.0 ALTERNATIVE:2 ENSMUSG00000003923 Tfam ENSMUST00000092430 ENSMUSP00000090086 TRANSLATION protein_coding - CCDS23916.1 1 243.0 0.0 5.292 1.4 129.0 0.0 -3,-1 1.0 10 9.0 PRINCIPAL:2 ENSMUSG00000003923 Tfam ENSMUST00000152505 ENSMUSP00000120871 TRANSLATION protein_coding stop - 3 143.0 0.0 3.83 0.0 75.6 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000003923 Tfam ENSMUST00000145220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020212 Mdm1 ENSMUST00000164077 ENSMUSP00000132966 TRANSLATION protein_coding - CCDS48698.1 1 688.0 0.0 0.0 0.0 573.4 0.0 -4,-7 0.1573 12 4.356 MINOR ENSMUSG00000020212 Mdm1 ENSMUST00000218400 - NO_TRANSLATION retained_intron ENSMUSG00000020212 Mdm1 ENSMUST00000163238 ENSMUSP00000127919 TRANSLATION protein_coding - CCDS48697.1 1 718.0 0.0 0.0 0.1 600.8 0.0 -4,-7 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000020212 Mdm1 ENSMUST00000218011 - NO_TRANSLATION retained_intron ENSMUSG00000020212 Mdm1 ENSMUST00000169817 ENSMUSP00000126258 TRANSLATION protein_coding - CCDS48699.1 1 673.0 0.0 0.0 0.0 499.5 0.0 -4,-7 0.0766 10 0.0 MINOR ENSMUSG00000020212 Mdm1 ENSMUST00000020437 ENSMUSP00000020437 TRANSLATION protein_coding - CCDS36069.1 1 708.0 0.0 0.0 0.1 573.4 0.0 -4,-7 0.2318 12 4.356 MINOR ENSMUSG00000020212 Mdm1 ENSMUST00000219605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020212 Mdm1 ENSMUST00000219827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020212 Mdm1 ENSMUST00000219087 ENSMUSP00000151424 TRANSLATION protein_coding - - 2 240.0 0.0 0.0 0.0 169.8 0.0 -4,-7 0.0002 3 0.0 MINOR ENSMUSG00000020212 Mdm1 ENSMUST00000217767 - NO_TRANSLATION retained_intron ENSMUSG00000020229 Slc5a4a ENSMUST00000020450 ENSMUSP00000020450 TRANSLATION protein_coding - CCDS35941.1 2 656.0 0.0 10.6 11.3 528.7 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000035759 Bbs10 ENSMUST00000040454 ENSMUSP00000049387 TRANSLATION protein_coding - CCDS48689.1 2 713.0 0.0 0.5 0.4 77.8 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035759 Bbs10 ENSMUST00000219990 - NO_TRANSLATION retained_intron ENSMUSG00000000295 Hddc2 ENSMUST00000162076 - NO_TRANSLATION retained_intron ENSMUSG00000000295 Hddc2 ENSMUST00000159659 - NO_TRANSLATION retained_intron ENSMUSG00000000295 Hddc2 ENSMUST00000159194 ENSMUSP00000124106 TRANSLATION nonsense_mediated_decay start - 5 127.0 3.0 2.75 0.0 122.4 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000000295 Hddc2 ENSMUST00000000304 ENSMUSP00000000304 TRANSLATION protein_coding - CCDS23767.1 1 199.0 4.0 5.25 5.3 166.9 0.0 -4,0 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000000295 Hddc2 ENSMUST00000160447 - NO_TRANSLATION retained_intron ENSMUSG00000050844 1700020N01Rik ENSMUST00000249401 ENSMUSP00000159752 TRANSLATION protein_coding - - - 87.0 0.0 1.0 0.0 62.2 0.0 -4,-5 0.7743 1 12.0 PRINCIPAL:1 ENSMUSG00000050844 1700020N01Rik ENSMUST00000186635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050844 1700020N01Rik ENSMUST00000057341 ENSMUSP00000054237 TRANSLATION protein_coding - - 1 87.0 0.0 1.0 0.0 62.2 0.0 -4,-5 0.7743 1 12.0 PRINCIPAL:1 ENSMUSG00000050844 1700020N01Rik ENSMUST00000249402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061904 Slc25a3 ENSMUST00000076694 ENSMUSP00000075987 TRANSLATION protein_coding - CCDS24121.1 1 357.0 0.0 6.2 30.8 165.3 2.0 -4,-2 1.0 18 12.0 PRINCIPAL:3 ENSMUSG00000061904 Slc25a3 ENSMUST00000169339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061904 Slc25a3 ENSMUST00000167455 - NO_TRANSLATION retained_intron ENSMUSG00000061904 Slc25a3 ENSMUST00000172442 - NO_TRANSLATION retained_intron ENSMUSG00000061904 Slc25a3 ENSMUST00000163246 ENSMUSP00000129301 TRANSLATION nonsense_mediated_decay - - 5 101.0 0.0 1.365 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000061904 Slc25a3 ENSMUST00000164505 ENSMUSP00000132480 TRANSLATION protein_coding - CCDS24121.1 5 357.0 0.0 6.2 30.8 165.3 2.0 -4,-2 1.0 18 12.0 PRINCIPAL:3 ENSMUSG00000061904 Slc25a3 ENSMUST00000171960 - NO_TRANSLATION retained_intron ENSMUSG00000061904 Slc25a3 ENSMUST00000170810 ENSMUSP00000127098 TRANSLATION protein_coding - - 5 358.0 0.0 6.2 30.8 163.6 2.0 -4,-1 0.813 17 12.0 ALTERNATIVE:1 ENSMUSG00000020123 Avpr1a ENSMUST00000020323 ENSMUSP00000020323 TRANSLATION protein_coding - CCDS24215.1 1 423.0 0.0 0.6 6.5 235.7 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020042 Abtb3 ENSMUST00000145433 - NO_TRANSLATION retained_intron ENSMUSG00000020042 Abtb3 ENSMUST00000135235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020042 Abtb3 ENSMUST00000145323 - NO_TRANSLATION retained_intron ENSMUSG00000020042 Abtb3 ENSMUST00000105306 ENSMUSP00000100943 TRANSLATION protein_coding - CCDS36018.1 1 640.0 0.0 4.7685 4.7 140.8 0.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000020042 Abtb3 ENSMUST00000156123 - NO_TRANSLATION retained_intron ENSMUSG00000020042 Abtb3 ENSMUST00000020231 ENSMUSP00000020231 TRANSLATION protein_coding stop - 5 793.0 0.0 2.42 0.0 34.1 0.0 -4,-7 0.0073 8 -2.0 MINOR ENSMUSG00000020042 Abtb3 ENSMUST00000128338 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020042 Abtb3 ENSMUST00000105307 ENSMUSP00000100944 TRANSLATION protein_coding - CCDS24091.2 1 1109.0 0.0 4.7685 2.3 139.7 0.0 -4,-7 0.5498 14 12.636 MINOR ENSMUSG00000025383 Il23a ENSMUST00000218109 - NO_TRANSLATION retained_intron ENSMUSG00000025383 Il23a ENSMUST00000026449 ENSMUSP00000026449 TRANSLATION protein_coding - CCDS24270.1 1 196.0 0.0 3.8 0.1 315.4 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020251 Glt8d2 ENSMUST00000128142 - NO_TRANSLATION retained_intron ENSMUSG00000020251 Glt8d2 ENSMUST00000150269 ENSMUSP00000115379 TRANSLATION protein_coding start - 2 62.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020251 Glt8d2 ENSMUST00000155529 ENSMUSP00000134856 TRANSLATION protein_coding stop - 5 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020251 Glt8d2 ENSMUST00000140071 - NO_TRANSLATION retained_intron ENSMUSG00000020251 Glt8d2 ENSMUST00000125505 ENSMUSP00000135897 TRANSLATION nonsense_mediated_decay - - 3 45.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000020251 Glt8d2 ENSMUST00000065815 ENSMUSP00000069188 TRANSLATION protein_coding - - 1 361.0 2.0 1.78 0.0 133.8 0.0 -1,-5 0.0274 3 11.943 MINOR ENSMUSG00000020251 Glt8d2 ENSMUST00000020485 ENSMUSP00000020485 TRANSLATION protein_coding - - 1 349.0 3.0 1.912 17.7 161.2 0.0 -1,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000061983 Rps12 ENSMUST00000073926 ENSMUSP00000073581 TRANSLATION protein_coding - - 5 137.0 0.0 4.0 34.2 95.0 0.0 -4,-5 0.7733 9 11.334 ALTERNATIVE:1 ENSMUSG00000061983 Rps12 ENSMUST00000218221 ENSMUSP00000151586 TRANSLATION protein_coding - - 5 148.0 0.0 4.0 0.0 103.7 0.0 -4,-7 0.0845 9 8.0 MINOR ENSMUSG00000061983 Rps12 ENSMUST00000217883 - NO_TRANSLATION retained_intron ENSMUSG00000061983 Rps12 ENSMUST00000220171 - NO_TRANSLATION retained_intron ENSMUSG00000061983 Rps12 ENSMUST00000218185 - NO_TRANSLATION retained_intron ENSMUSG00000061983 Rps12 ENSMUST00000220070 ENSMUSP00000151271 TRANSLATION protein_coding - CCDS23733.1 1 132.0 0.0 4.0 34.2 103.7 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:4 ENSMUSG00000061983 Rps12 ENSMUST00000219783 - NO_TRANSLATION retained_intron ENSMUSG00000061983 Rps12 ENSMUST00000218142 ENSMUSP00000151838 TRANSLATION nonsense_mediated_decay start - 2 48.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061983 Rps12 ENSMUST00000218107 ENSMUSP00000151305 TRANSLATION protein_coding - CCDS23733.1 1 132.0 0.0 4.0 34.2 103.7 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:4 ENSMUSG00000062074 Ccn6 ENSMUST00000076713 ENSMUSP00000076003 TRANSLATION protein_coding - CCDS48537.1 5 354.0 3.0 0.6 2.7 69.1 0.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000096421 Gm10100 ENSMUST00000179726 ENSMUSP00000137358 TRANSLATION protein_coding - CCDS56725.1 - 120.0 0.0 0.0 3.0 28.8 0.0 -4,-6 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000001120 Pcbp3 ENSMUST00000173854 ENSMUSP00000134144 TRANSLATION protein_coding start - 3 161.0 0.0 1.895 0.0 68.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000001120 Pcbp3 ENSMUST00000168505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001120 Pcbp3 ENSMUST00000105411 ENSMUSP00000101051 TRANSLATION protein_coding - CCDS83716.1 1 370.0 0.0 6.455 9.6 198.4 0.0 -4,-5 0.9831 8 11.0 ALTERNATIVE:1 ENSMUSG00000001120 Pcbp3 ENSMUST00000168240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001120 Pcbp3 ENSMUST00000171437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001120 Pcbp3 ENSMUST00000092393 ENSMUSP00000090048 TRANSLATION nonsense_mediated_decay - - 5 226.0 0.0 4.74 5.2 130.1 0.0 -4,-5 0.2535 5 -2.0 MINOR ENSMUSG00000001120 Pcbp3 ENSMUST00000165571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001120 Pcbp3 ENSMUST00000168465 ENSMUSP00000129465 TRANSLATION protein_coding - CCDS35946.2 5 371.0 0.0 6.455 9.6 198.4 0.0 -4,-5 1.0 8 11.0 PRINCIPAL:4 ENSMUSG00000001120 Pcbp3 ENSMUST00000001148 ENSMUSP00000001148 TRANSLATION protein_coding - CCDS35946.2 1 371.0 0.0 6.455 9.6 198.4 0.0 -4,-5 1.0 8 11.0 PRINCIPAL:4 ENSMUSG00000039232 Stx11 ENSMUST00000042861 ENSMUSP00000046243 TRANSLATION protein_coding - CCDS48500.1 1 287.0 0.0 2.0 13.3 213.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000039232 Stx11 ENSMUST00000218685 ENSMUSP00000151448 TRANSLATION protein_coding stop - 2 84.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039232 Stx11 ENSMUST00000163425 ENSMUSP00000132758 TRANSLATION protein_coding - CCDS48500.1 1 287.0 0.0 2.0 13.3 213.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000039232 Stx11 ENSMUST00000219727 ENSMUSP00000151223 TRANSLATION protein_coding stop - 2 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019878 Hsf2 ENSMUST00000079833 ENSMUSP00000078761 TRANSLATION protein_coding - CCDS23852.1 1 517.0 0.0 3.08 10.0 296.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019878 Hsf2 ENSMUST00000219171 - NO_TRANSLATION retained_intron ENSMUSG00000019878 Hsf2 ENSMUST00000218251 - NO_TRANSLATION retained_intron ENSMUSG00000019878 Hsf2 ENSMUST00000220353 ENSMUSP00000151957 TRANSLATION nonsense_mediated_decay - - 1 246.0 0.0 3.08 0.0 114.2 0.0 -4,-7 0.0279 - -2.0 MINOR ENSMUSG00000019878 Hsf2 ENSMUST00000220042 ENSMUSP00000152013 TRANSLATION protein_coding - - 5 478.0 0.0 1.33 1.1 271.5 0.0 -4,-2 0.0142 - 7.017 MINOR ENSMUSG00000019878 Hsf2 ENSMUST00000220162 - NO_TRANSLATION retained_intron ENSMUSG00000078435 AU041133 ENSMUST00000201286 ENSMUSP00000144661 TRANSLATION protein_coding - CCDS78873.1 1 498.0 56.0 1.1875 0.4 330.0 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000078435 AU041133 ENSMUST00000105314 ENSMUSP00000100951 TRANSLATION protein_coding start - 5 497.0 56.0 1.1875 0.4 330.0 0.0 -4,-5 0.4724 1 -2.0 MINOR ENSMUSG00000019979 Apaf1 ENSMUST00000160725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019979 Apaf1 ENSMUST00000161095 - NO_TRANSLATION retained_intron ENSMUSG00000019979 Apaf1 ENSMUST00000159110 ENSMUSP00000125291 TRANSLATION protein_coding - CCDS36030.1 1 1249.0 14.0 26.33 21.1 538.6 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000019979 Apaf1 ENSMUST00000161987 ENSMUSP00000124422 TRANSLATION protein_coding - - 1 258.0 11.0 4.33 0.0 156.5 0.0 -4,-5 0.0 6 4.002 MINOR ENSMUSG00000019979 Apaf1 ENSMUST00000020157 ENSMUSP00000020157 TRANSLATION protein_coding - CCDS36030.1 1 1249.0 14.0 26.33 21.1 538.6 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000019979 Apaf1 ENSMUST00000159457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019979 Apaf1 ENSMUST00000160788 ENSMUSP00000124968 TRANSLATION protein_coding - - 1 258.0 11.0 4.33 0.0 156.5 0.0 -4,-5 0.0 6 4.002 MINOR ENSMUSG00000019979 Apaf1 ENSMUST00000162618 ENSMUSP00000124134 TRANSLATION protein_coding - CCDS70095.1 1 1238.0 14.0 26.0 2.1 538.6 0.0 -4,-5 0.4807 19 17.56 MINOR ENSMUSG00000012819 Cdh23 ENSMUST00000123309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012819 Cdh23 ENSMUST00000073242 ENSMUSP00000072973 TRANSLATION protein_coding - - 5 3353.0 262.0 47.9395 5.7 1376.1 0.0 4,-1 0.7835 10 13.83 MINOR ENSMUSG00000012819 Cdh23 ENSMUST00000124712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012819 Cdh23 ENSMUST00000153149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012819 Cdh23 ENSMUST00000156501 - NO_TRANSLATION retained_intron ENSMUSG00000012819 Cdh23 ENSMUST00000127312 - NO_TRANSLATION retained_intron ENSMUSG00000012819 Cdh23 ENSMUST00000144462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012819 Cdh23 ENSMUST00000128249 - NO_TRANSLATION retained_intron ENSMUSG00000012819 Cdh23 ENSMUST00000153677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012819 Cdh23 ENSMUST00000151194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012819 Cdh23 ENSMUST00000135638 - NO_TRANSLATION retained_intron ENSMUSG00000012819 Cdh23 ENSMUST00000105461 ENSMUSP00000101101 TRANSLATION protein_coding - - 5 3354.0 264.0 47.9395 5.7 1407.2 0.0 4,-1 0.8289 10 15.362 ALTERNATIVE:1 ENSMUSG00000012819 Cdh23 ENSMUST00000153525 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012819 Cdh23 ENSMUST00000105464 ENSMUSP00000101104 TRANSLATION protein_coding - CCDS56704.1 5 3352.0 263.0 47.9395 7.9 1409.1 0.0 4,-1 1.0 10 15.334 PRINCIPAL:4 ENSMUSG00000012819 Cdh23 ENSMUST00000105462 ENSMUSP00000101102 TRANSLATION protein_coding - - 5 3321.0 262.0 47.9395 5.0 1369.6 0.0 4,-1 0.7946 10 13.428 MINOR ENSMUSG00000012819 Cdh23 ENSMUST00000105463 ENSMUSP00000101103 TRANSLATION protein_coding - - 5 3319.0 264.0 47.9395 7.2 1407.2 0.0 4,-1 0.922 10 15.798 ALTERNATIVE:1 ENSMUSG00000035673 Sbno2 ENSMUST00000217683 - NO_TRANSLATION retained_intron ENSMUSG00000035673 Sbno2 ENSMUST00000217972 ENSMUSP00000151449 TRANSLATION protein_coding - - 2 736.0 10.0 0.0 0.0 439.8 0.0 -4,-6 0.011 3 6.0 MINOR ENSMUSG00000035673 Sbno2 ENSMUST00000219260 ENSMUSP00000151590 TRANSLATION protein_coding - CCDS24008.1 5 1349.0 10.0 0.0 0.4 830.9 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000035673 Sbno2 ENSMUST00000218462 - NO_TRANSLATION retained_intron ENSMUSG00000035673 Sbno2 ENSMUST00000042771 ENSMUSP00000041635 TRANSLATION protein_coding - CCDS24008.1 5 1349.0 10.0 0.0 0.4 830.9 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000035673 Sbno2 ENSMUST00000218310 - NO_TRANSLATION retained_intron ENSMUSG00000035673 Sbno2 ENSMUST00000219258 ENSMUSP00000151835 TRANSLATION nonsense_mediated_decay - - 1 115.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035673 Sbno2 ENSMUST00000218630 ENSMUSP00000151854 TRANSLATION protein_coding stop - 1 1230.0 10.0 0.0 0.0 830.9 0.0 -4,-5 0.334 9 -2.0 MINOR ENSMUSG00000035673 Sbno2 ENSMUST00000217876 - NO_TRANSLATION retained_intron ENSMUSG00000025389 Mip ENSMUST00000026455 ENSMUSP00000026455 TRANSLATION protein_coding - CCDS24265.1 1 263.0 0.0 3.75 29.2 267.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000019818 Cd164 ENSMUST00000189300 ENSMUSP00000139583 TRANSLATION protein_coding start - 1 162.0 0.0 1.0 0.0 198.8 1.0 -4,-2 0.0813 2 -2.0 MINOR ENSMUSG00000019818 Cd164 ENSMUST00000186388 ENSMUSP00000150041 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.0 0.0 0.0 0.0 -2,-3 0.0 - -2.0 MINOR ENSMUSG00000019818 Cd164 ENSMUST00000019962 ENSMUSP00000019962 TRANSLATION protein_coding - CCDS23806.1 1 197.0 0.0 1.0 1.4 198.8 1.0 3,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000019818 Cd164 ENSMUST00000187279 - NO_TRANSLATION retained_intron ENSMUSG00000061780 Cfd ENSMUST00000061653 ENSMUSP00000056836 TRANSLATION protein_coding - CCDS23995.1 1 259.0 6.0 4.0 0.3 222.1 0.0 3,-2 0.7672 6 14.0 ALTERNATIVE:2 ENSMUSG00000061780 Cfd ENSMUST00000217837 ENSMUSP00000151894 TRANSLATION protein_coding - - 1 258.0 6.0 4.0 0.3 222.1 0.0 4,-1 0.8028 6 14.0 PRINCIPAL:4 ENSMUSG00000020062 Slc5a8 ENSMUST00000020255 ENSMUSP00000020255 TRANSLATION protein_coding - CCDS36026.1 1 611.0 0.0 5.255 10.1 124.2 0.0 -3,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000020255 Nopchap1 ENSMUST00000020488 ENSMUSP00000020488 TRANSLATION protein_coding - CCDS24076.1 1 185.0 0.0 1.2 0.0 55.3 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000060487 Samd5 ENSMUST00000100070 ENSMUSP00000097648 TRANSLATION protein_coding - CCDS35836.1 1 173.0 0.0 0.2 7.0 57.4 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060487 Samd5 ENSMUST00000221079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096856 Gm10778 ENSMUST00000189672 ENSMUSP00000140398 TRANSLATION protein_coding - CCDS78871.1 1 499.0 56.0 1.0 0.4 345.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000096856 Gm10778 ENSMUST00000105315 ENSMUSP00000100952 TRANSLATION protein_coding start - 5 498.0 56.0 1.0 0.4 345.1 0.0 -4,-5 0.4626 - -2.0 MINOR ENSMUSG00000019920 Lims1 ENSMUST00000238939 ENSMUSP00000158997 TRANSLATION protein_coding - - - 362.0 33.0 8.0 26.1 238.9 0.0 -4,-1 0.9283 9 17.202 ALTERNATIVE:1 ENSMUSG00000019920 Lims1 ENSMUST00000124312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019920 Lims1 ENSMUST00000020077 ENSMUSP00000020077 TRANSLATION protein_coding - CCDS56703.1 1 396.0 33.0 8.4 12.5 240.0 0.0 -4,-5 0.8779 12 15.832 MINOR ENSMUSG00000019920 Lims1 ENSMUST00000148799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019920 Lims1 ENSMUST00000020078 ENSMUSP00000020078 TRANSLATION protein_coding - CCDS23860.1 1 337.0 33.0 8.066 15.6 238.9 0.0 -4,-6 0.8618 9 15.662 MINOR ENSMUSG00000019920 Lims1 ENSMUST00000105468 ENSMUSP00000101108 TRANSLATION protein_coding - CCDS83697.1 1 387.0 33.0 8.4 20.8 238.9 0.0 -4,-5 1.0 10 17.156 PRINCIPAL:3 ENSMUSG00000036923 Stox1 ENSMUST00000148720 ENSMUSP00000116180 TRANSLATION protein_coding start - 3 136.0 0.0 1.4 0.0 119.3 0.0 -4,-7 0.0273 - -2.0 MINOR ENSMUSG00000036923 Stox1 ENSMUST00000133371 ENSMUSP00000114652 TRANSLATION protein_coding - CCDS48580.1 1 990.0 0.0 1.9 0.0 119.3 0.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036923 Stox1 ENSMUST00000126979 ENSMUSP00000114348 TRANSLATION nonsense_mediated_decay start - 3 39.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000046567 Rlig1 ENSMUST00000218821 ENSMUSP00000152035 TRANSLATION protein_coding stop - 3 147.0 0.0 2.85 0.0 0.0 0.0 -4,-2 0.0096 3 -2.0 MINOR ENSMUSG00000046567 Rlig1 ENSMUST00000219698 - NO_TRANSLATION retained_intron ENSMUSG00000046567 Rlig1 ENSMUST00000219790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046567 Rlig1 ENSMUST00000218328 ENSMUSP00000151658 TRANSLATION protein_coding start/stop - 5 225.0 0.0 4.6 0.0 0.0 0.0 -4,-5 0.0064 3 -2.0 MINOR ENSMUSG00000046567 Rlig1 ENSMUST00000218929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046567 Rlig1 ENSMUST00000219410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046567 Rlig1 ENSMUST00000219995 - NO_TRANSLATION retained_intron ENSMUSG00000046567 Rlig1 ENSMUST00000054471 ENSMUSP00000062410 TRANSLATION protein_coding - CCDS24151.1 1 327.0 0.0 7.2 18.8 0.0 0.0 -4,-2 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000034612 Chst11 ENSMUST00000040110 ENSMUSP00000045349 TRANSLATION protein_coding - CCDS24074.1 1 352.0 0.0 1.375 33.3 229.9 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000005357 Slc1a6 ENSMUST00000005490 ENSMUSP00000005490 TRANSLATION protein_coding - CCDS23970.1 1 561.0 0.0 6.41 11.8 432.3 5.0 -4,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000005357 Slc1a6 ENSMUST00000217717 ENSMUSP00000151544 TRANSLATION protein_coding stop - 3 169.0 0.0 2.3 0.0 88.6 2.0 -4,-2 0.0016 1 -2.0 MINOR ENSMUSG00000074780 Anapc15-ps ENSMUST00000218771 ENSMUSP00000151380 TRANSLATION protein_coding - - - 132.0 0.0 0.8 1.1 122.5 0.0 -4,-7 0.7803 - 13.0 PRINCIPAL:1 ENSMUSG00000090035 Galnt4 ENSMUST00000161240 ENSMUSP00000125315 TRANSLATION protein_coding - CCDS48679.1 - 578.0 21.0 1.0 9.5 208.0 0.0 1,-3 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000019832 Rab32 ENSMUST00000220018 ENSMUSP00000152210 TRANSLATION nonsense_mediated_decay - - 5 100.0 10.0 1.1 0.0 53.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019832 Rab32 ENSMUST00000019974 ENSMUSP00000019974 TRANSLATION protein_coding - CCDS23695.1 1 223.0 19.0 3.0 5.3 141.6 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000112027 Cdc5lrt7 ENSMUST00000219760 ENSMUSP00000151826 TRANSLATION protein_coding - - - 802.0 0.0 0.6 30.9 351.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000075297 H60b ENSMUST00000131558 ENSMUSP00000117032 TRANSLATION protein_coding - CCDS48520.1 5 251.0 0.0 1.0 0.0 0.0 1.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000075297 H60b ENSMUST00000105522 ENSMUSP00000101161 TRANSLATION protein_coding - CCDS48520.1 1 251.0 0.0 1.0 0.0 0.0 1.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000025355 Mmp19 ENSMUST00000026411 ENSMUSP00000026411 TRANSLATION protein_coding - CCDS24292.1 1 527.0 16.0 3.648 1.0 321.8 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000025355 Mmp19 ENSMUST00000219404 ENSMUSP00000151437 TRANSLATION protein_coding - - 1 455.0 16.0 3.098 0.0 289.7 0.0 -4,-5 0.0343 4 14.976 MINOR ENSMUSG00000025355 Mmp19 ENSMUST00000218021 - NO_TRANSLATION retained_intron ENSMUSG00000020022 Ndufa12 ENSMUST00000135292 ENSMUSP00000119625 TRANSLATION nonsense_mediated_decay - - 5 85.0 0.0 2.25 0.0 45.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000020022 Ndufa12 ENSMUST00000125379 - NO_TRANSLATION retained_intron ENSMUSG00000020022 Ndufa12 ENSMUST00000020209 ENSMUSP00000020209 TRANSLATION protein_coding - - 1 145.0 0.0 3.25 25.9 102.5 0.0 -4,-7 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000020022 Ndufa12 ENSMUST00000179990 ENSMUSP00000136313 TRANSLATION protein_coding - CCDS24132.1 1 149.0 0.0 3.25 0.3 102.5 0.0 -4,-7 0.2735 10 12.0 MINOR ENSMUSG00000004939 Nmrk2 ENSMUST00000005069 ENSMUSP00000005069 TRANSLATION protein_coding - CCDS24046.1 1 195.0 6.0 5.33 24.1 58.1 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000020072 Pbld2 ENSMUST00000124784 ENSMUSP00000121682 TRANSLATION protein_coding stop - 3 175.0 0.0 3.25 0.0 0.0 0.0 -4,0 0.009 6 -2.0 MINOR ENSMUSG00000020072 Pbld2 ENSMUST00000130531 - NO_TRANSLATION retained_intron ENSMUSG00000020072 Pbld2 ENSMUST00000020262 ENSMUSP00000020262 TRANSLATION protein_coding - CCDS23894.1 1 288.0 0.0 8.08 26.5 0.0 0.0 -4,-6 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000020034 Tcp11l2 ENSMUST00000020223 ENSMUSP00000020223 TRANSLATION protein_coding - CCDS36016.1 1 517.0 0.0 2.5 10.3 353.8 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000020034 Tcp11l2 ENSMUST00000162874 - NO_TRANSLATION retained_intron ENSMUSG00000020034 Tcp11l2 ENSMUST00000160057 - NO_TRANSLATION retained_intron ENSMUSG00000019905 Gprc6a ENSMUST00000020062 ENSMUSP00000020062 TRANSLATION protein_coding - CCDS23834.1 1 928.0 0.0 3.28 6.6 457.5 9.0 2,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000019905 Gprc6a ENSMUST00000219286 ENSMUSP00000151341 TRANSLATION protein_coding - - 1 857.0 0.0 2.96 3.1 435.3 9.0 2,-1 0.3171 - 10.776 MINOR ENSMUSG00000019905 Gprc6a ENSMUST00000218684 ENSMUSP00000152031 TRANSLATION protein_coding - - 1 753.0 0.0 3.08 3.8 387.6 9.0 2,-1 0.2805 - 8.404 MINOR ENSMUSG00000019813 Cep57l1 ENSMUST00000189770 ENSMUSP00000140147 TRANSLATION protein_coding - CCDS23808.1 1 400.0 0.0 0.998 0.0 252.6 0.0 -4,-5 0.1863 4 7.334 ALTERNATIVE:2 ENSMUSG00000019813 Cep57l1 ENSMUST00000105505 ENSMUSP00000101144 TRANSLATION protein_coding - CCDS23808.1 5 400.0 0.0 0.998 0.0 252.6 0.0 -4,-5 0.1863 4 7.334 ALTERNATIVE:2 ENSMUSG00000019813 Cep57l1 ENSMUST00000215496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019813 Cep57l1 ENSMUST00000190022 ENSMUSP00000141031 TRANSLATION protein_coding - - 1 353.0 0.0 0.998 0.0 176.3 0.0 -4,-5 0.0341 2 7.0 MINOR ENSMUSG00000019813 Cep57l1 ENSMUST00000191498 ENSMUSP00000141089 TRANSLATION protein_coding stop - 3 235.0 0.0 0.0 0.0 194.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019813 Cep57l1 ENSMUST00000185394 ENSMUSP00000140618 TRANSLATION protein_coding start - 2 71.0 0.0 0.798 0.0 48.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019813 Cep57l1 ENSMUST00000188514 - NO_TRANSLATION retained_intron ENSMUSG00000019813 Cep57l1 ENSMUST00000019951 ENSMUSP00000019951 TRANSLATION protein_coding - CCDS48549.1 5 429.0 0.0 0.998 0.1 269.7 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000019813 Cep57l1 ENSMUST00000189222 - NO_TRANSLATION retained_intron ENSMUSG00000019813 Cep57l1 ENSMUST00000187143 ENSMUSP00000140389 TRANSLATION protein_coding - CCDS23808.1 1 400.0 0.0 0.998 0.0 252.6 0.0 -4,-5 0.1863 4 7.334 ALTERNATIVE:2 ENSMUSG00000019813 Cep57l1 ENSMUST00000187935 - NO_TRANSLATION retained_intron ENSMUSG00000019813 Cep57l1 ENSMUST00000186239 ENSMUSP00000139509 TRANSLATION protein_coding - CCDS48549.1 1 429.0 0.0 0.998 0.1 269.7 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000019848 Popdc3 ENSMUST00000161803 ENSMUSP00000125532 TRANSLATION protein_coding - - 1 171.0 0.0 2.0 0.0 121.1 6.0 -4,-7 0.0055 - 5.682 MINOR ENSMUSG00000019848 Popdc3 ENSMUST00000175658 ENSMUSP00000135373 TRANSLATION protein_coding stop - 3 106.0 0.0 1.0 0.0 89.1 6.0 -4,-7 0.0044 - -2.0 MINOR ENSMUSG00000019848 Popdc3 ENSMUST00000019994 ENSMUSP00000019994 TRANSLATION protein_coding - CCDS23827.1 1 291.0 0.0 4.16 11.8 154.4 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038624 Nepn ENSMUST00000067085 ENSMUSP00000070130 TRANSLATION protein_coding - CCDS23840.1 1 512.0 0.0 4.0 8.2 164.5 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038624 Nepn ENSMUST00000219730 ENSMUSP00000151395 TRANSLATION protein_coding stop - 2 201.0 0.0 1.0 0.0 53.6 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000037490 Slc2a12 ENSMUST00000042261 ENSMUSP00000043962 TRANSLATION protein_coding - CCDS23729.1 1 622.0 0.0 1.932 7.8 342.2 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000037490 Slc2a12 ENSMUST00000159174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094673 Or7a38 ENSMUST00000217073 ENSMUSP00000150374 TRANSLATION protein_coding - CCDS56733.1 2 310.0 0.0 1.0 7.6 164.7 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094673 Or7a38 ENSMUST00000075859 ENSMUSP00000093126 TRANSLATION protein_coding - CCDS56733.1 - 310.0 0.0 1.0 7.6 164.7 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094673 Or7a38 ENSMUST00000204587 ENSMUSP00000144801 TRANSLATION protein_coding - CCDS56733.1 2 310.0 0.0 1.0 7.6 164.7 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000100950 Taar7f ENSMUST00000071691 ENSMUSP00000071611 TRANSLATION protein_coding - CCDS23744.1 - 358.0 0.0 1.0 0.4 189.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025403 Shmt2 ENSMUST00000218313 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025403 Shmt2 ENSMUST00000218258 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025403 Shmt2 ENSMUST00000026470 ENSMUSP00000026470 TRANSLATION protein_coding - CCDS24244.1 1 504.0 20.0 10.5 21.3 690.7 0.0 -4,0 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000025403 Shmt2 ENSMUST00000218035 - NO_TRANSLATION retained_intron ENSMUSG00000025403 Shmt2 ENSMUST00000217682 - NO_TRANSLATION retained_intron ENSMUSG00000025403 Shmt2 ENSMUST00000220356 - NO_TRANSLATION retained_intron ENSMUSG00000025403 Shmt2 ENSMUST00000219239 ENSMUSP00000151616 TRANSLATION protein_coding - - 1 501.0 20.0 10.5 15.1 690.7 0.0 -4,0 0.8258 17 20.78 MINOR ENSMUSG00000035278 Plekhj1 ENSMUST00000036805 ENSMUSP00000042334 TRANSLATION protein_coding - CCDS48640.1 1 164.0 0.0 4.96 1.8 36.0 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000035278 Plekhj1 ENSMUST00000219959 ENSMUSP00000151910 TRANSLATION protein_coding start - 1 74.0 0.0 1.96 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035278 Plekhj1 ENSMUST00000220002 - NO_TRANSLATION retained_intron ENSMUSG00000035278 Plekhj1 ENSMUST00000220093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035278 Plekhj1 ENSMUST00000218209 ENSMUSP00000151943 TRANSLATION protein_coding stop - 3 75.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035278 Plekhj1 ENSMUST00000218036 - NO_TRANSLATION retained_intron ENSMUSG00000035278 Plekhj1 ENSMUST00000219767 - NO_TRANSLATION retained_intron ENSMUSG00000035278 Plekhj1 ENSMUST00000217735 - NO_TRANSLATION retained_intron ENSMUSG00000035278 Plekhj1 ENSMUST00000219378 ENSMUSP00000151249 TRANSLATION nonsense_mediated_decay - - 2 65.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050953 Gja1 ENSMUST00000068581 ENSMUSP00000064536 TRANSLATION protein_coding - CCDS23851.1 1 382.0 0.0 2.3 33.9 351.8 4.0 -2,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000050953 Gja1 ENSMUST00000220204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050953 Gja1 ENSMUST00000217789 ENSMUSP00000151596 TRANSLATION protein_coding stop - 1 28.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050953 Gja1 ENSMUST00000218760 - NO_TRANSLATION retained_intron ENSMUSG00000050953 Gja1 ENSMUST00000220069 ENSMUSP00000151620 TRANSLATION protein_coding - CCDS23851.1 1 382.0 0.0 2.3 33.9 351.8 4.0 -2,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000050953 Gja1 ENSMUST00000218834 ENSMUSP00000151647 TRANSLATION protein_coding stop - 1 28.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050953 Gja1 ENSMUST00000220194 ENSMUSP00000151603 TRANSLATION protein_coding stop - 1 28.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050953 Gja1 ENSMUST00000218444 ENSMUSP00000151974 TRANSLATION protein_coding stop - 3 57.0 0.0 1.5 0.0 73.8 1.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000035041 Creb3l3 ENSMUST00000117422 ENSMUSP00000112836 TRANSLATION protein_coding - CCDS24043.1 1 479.0 0.0 3.35 0.3 43.5 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000035041 Creb3l3 ENSMUST00000125907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035041 Creb3l3 ENSMUST00000143969 - NO_TRANSLATION retained_intron ENSMUSG00000035041 Creb3l3 ENSMUST00000127374 - NO_TRANSLATION retained_intron ENSMUSG00000096795 Zfp433 ENSMUST00000201819 ENSMUSP00000144100 TRANSLATION protein_coding stop - 5 169.0 14.0 1.375 0.0 72.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000096795 Zfp433 ENSMUST00000085664 ENSMUSP00000082807 TRANSLATION protein_coding start - 5 599.0 68.0 2.375 0.0 365.9 0.0 -4,-5 0.5763 - -2.0 MINOR ENSMUSG00000096795 Zfp433 ENSMUST00000200889 ENSMUSP00000144123 TRANSLATION protein_coding - CCDS78872.1 1 600.0 68.0 2.375 0.0 365.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000096795 Zfp433 ENSMUST00000201114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020131 Pcsk4 ENSMUST00000020340 ENSMUSP00000020340 TRANSLATION protein_coding - CCDS24018.1 1 655.0 7.0 12.46 0.0 313.9 0.0 4,-1 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000020131 Pcsk4 ENSMUST00000135071 ENSMUSP00000137719 TRANSLATION nonsense_mediated_decay start - 5 187.0 5.0 2.85 0.0 106.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020131 Pcsk4 ENSMUST00000137177 - NO_TRANSLATION retained_intron ENSMUSG00000020131 Pcsk4 ENSMUST00000128653 ENSMUSP00000137809 TRANSLATION nonsense_mediated_decay - - 5 258.0 6.0 3.85 0.0 135.4 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000020131 Pcsk4 ENSMUST00000147132 - NO_TRANSLATION retained_intron ENSMUSG00000020131 Pcsk4 ENSMUST00000130521 - NO_TRANSLATION retained_intron ENSMUSG00000020075 Ddx21 ENSMUST00000045866 ENSMUSP00000042691 TRANSLATION protein_coding - CCDS23891.1 1 851.0 13.0 10.425 0.0 357.3 0.0 -4,-5 1.0 29 18.0 PRINCIPAL:1 ENSMUSG00000020075 Ddx21 ENSMUST00000218393 - NO_TRANSLATION retained_intron ENSMUSG00000020075 Ddx21 ENSMUST00000220060 - NO_TRANSLATION retained_intron ENSMUSG00000033318 Gstt2 ENSMUST00000038257 ENSMUSP00000046324 TRANSLATION protein_coding - CCDS48601.1 1 244.0 11.0 5.25 4.9 79.1 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000033318 Gstt2 ENSMUST00000220440 ENSMUSP00000151239 TRANSLATION protein_coding - CCDS48601.1 5 244.0 11.0 5.25 4.9 79.1 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000033318 Gstt2 ENSMUST00000220195 ENSMUSP00000151701 TRANSLATION protein_coding stop - 5 182.0 11.0 4.514 0.0 31.6 0.0 -4,-5 0.0004 7 -2.0 MINOR ENSMUSG00000033318 Gstt2 ENSMUST00000219343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033318 Gstt2 ENSMUST00000218034 - NO_TRANSLATION retained_intron ENSMUSG00000033318 Gstt2 ENSMUST00000218500 ENSMUSP00000151307 TRANSLATION protein_coding - - 5 170.0 11.0 3.414 0.0 43.9 0.0 -4,-5 0.0009 5 11.658 MINOR ENSMUSG00000033318 Gstt2 ENSMUST00000218646 - NO_TRANSLATION retained_intron ENSMUSG00000033318 Gstt2 ENSMUST00000218745 - NO_TRANSLATION retained_intron ENSMUSG00000003348 Mob3a ENSMUST00000218439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003348 Mob3a ENSMUST00000218090 ENSMUSP00000151220 TRANSLATION protein_coding stop - 3 94.0 2.0 0.8 0.0 85.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000003348 Mob3a ENSMUST00000003438 ENSMUSP00000003438 TRANSLATION protein_coding - CCDS35982.1 1 217.0 4.0 3.13 20.3 275.5 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000003348 Mob3a ENSMUST00000220138 ENSMUSP00000151405 TRANSLATION protein_coding stop - 3 90.0 1.0 0.8 0.0 78.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000096486 Atg5lrt ENSMUST00000074615 ENSMUSP00000136869 TRANSLATION protein_coding - - - 103.0 0.0 1.0 18.5 87.5 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074862 BC025920 ENSMUST00000126940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074862 BC025920 ENSMUST00000119492 ENSMUSP00000113938 TRANSLATION protein_coding - - 1 128.0 11.0 0.64 0.0 49.3 0.0 -4,0 0.7713 - 18.0 PRINCIPAL:1 ENSMUSG00000074862 BC025920 ENSMUST00000121138 ENSMUSP00000113598 TRANSLATION protein_coding - - 1 128.0 11.0 0.64 0.0 49.3 0.0 -4,0 0.7713 - 18.0 PRINCIPAL:1 ENSMUSG00000074862 BC025920 ENSMUST00000099442 ENSMUSP00000097041 TRANSLATION protein_coding - - - 128.0 11.0 0.64 0.0 49.3 0.0 -4,0 0.7713 - 18.0 PRINCIPAL:1 ENSMUSG00000074862 BC025920 ENSMUST00000119753 ENSMUSP00000113471 TRANSLATION protein_coding - - 1 128.0 11.0 0.64 0.0 49.3 0.0 -4,0 0.7713 - 18.0 PRINCIPAL:1 ENSMUSG00000020132 Rab21 ENSMUST00000218831 ENSMUSP00000151464 TRANSLATION protein_coding - - - 94.0 14.0 1.066 0.0 37.0 0.0 -3,-1 0.0 1 0.0 MINOR ENSMUSG00000020132 Rab21 ENSMUST00000020343 ENSMUSP00000020343 TRANSLATION protein_coding - CCDS24177.1 1 222.0 25.0 5.6 6.0 195.4 0.0 -3,-6 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000038010 Ccdc138 ENSMUST00000036576 ENSMUSP00000043040 TRANSLATION protein_coding - CCDS48565.1 1 680.0 0.0 0.0 0.4 0.0 0.0 -4,-6 0.919 2 0.0 PRINCIPAL:1 ENSMUSG00000038010 Ccdc138 ENSMUST00000217992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035621 Midn ENSMUST00000099492 ENSMUSP00000097091 TRANSLATION protein_coding - CCDS83727.1 5 465.0 0.0 0.86 3.2 25.2 0.0 -4,-7 0.7501 1 9.0 ALTERNATIVE:2 ENSMUSG00000035621 Midn ENSMUST00000153477 ENSMUSP00000119787 TRANSLATION protein_coding stop - 5 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035621 Midn ENSMUST00000146516 ENSMUSP00000119962 TRANSLATION protein_coding stop - 2 175.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035621 Midn ENSMUST00000042057 ENSMUSP00000046967 TRANSLATION protein_coding - CCDS24011.1 1 508.0 0.0 0.86 3.2 25.2 0.0 -4,-7 1.0 1 9.0 PRINCIPAL:4 ENSMUSG00000035621 Midn ENSMUST00000144526 ENSMUSP00000120988 TRANSLATION protein_coding stop - 2 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035621 Midn ENSMUST00000124179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035621 Midn ENSMUST00000151202 ENSMUSP00000115717 TRANSLATION protein_coding stop - 3 67.0 0.0 0.2 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000059406 Tmprss9 ENSMUST00000105333 ENSMUSP00000100970 TRANSLATION protein_coding - CCDS48641.1 1 1099.0 19.0 8.3 3.2 722.1 1.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000059406 Tmprss9 ENSMUST00000219742 - NO_TRANSLATION retained_intron ENSMUSG00000059406 Tmprss9 ENSMUST00000219817 ENSMUSP00000152034 TRANSLATION protein_coding - CCDS48641.1 5 1099.0 19.0 8.3 3.2 722.1 1.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000001151 Pcnt ENSMUST00000001179 ENSMUSP00000001179 TRANSLATION protein_coding - CCDS23944.1 2 2916.0 0.0 0.0 0.0 85.9 0.0 -4,-5 0.8181 44 2.0 ALTERNATIVE:2 ENSMUSG00000001151 Pcnt ENSMUST00000219243 ENSMUSP00000151981 TRANSLATION nonsense_mediated_decay start - 5 156.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000001151 Pcnt ENSMUST00000219701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001151 Pcnt ENSMUST00000219403 - NO_TRANSLATION retained_intron ENSMUSG00000001151 Pcnt ENSMUST00000218747 - NO_TRANSLATION retained_intron ENSMUSG00000001151 Pcnt ENSMUST00000217838 ENSMUSP00000151534 TRANSLATION protein_coding - - 1 2898.0 0.0 0.0 0.0 85.9 0.0 -4,-5 0.9196 44 2.0 PRINCIPAL:4 ENSMUSG00000001151 Pcnt ENSMUST00000219011 - NO_TRANSLATION retained_intron ENSMUSG00000001151 Pcnt ENSMUST00000220395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019932 Kera ENSMUST00000105286 ENSMUSP00000100923 TRANSLATION protein_coding - CCDS36044.1 1 351.0 0.0 1.44 11.9 121.4 0.0 4,-1 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000034818 Celf5 ENSMUST00000128494 - NO_TRANSLATION retained_intron ENSMUSG00000034818 Celf5 ENSMUST00000120856 ENSMUSP00000113784 TRANSLATION protein_coding - CCDS78868.1 1 318.0 0.0 3.724 2.9 60.3 0.0 -4,-5 0.4324 2 1.0 MINOR ENSMUSG00000034818 Celf5 ENSMUST00000147524 ENSMUSP00000117430 TRANSLATION protein_coding stop - 3 92.0 0.0 2.58 0.0 60.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000034818 Celf5 ENSMUST00000238823 ENSMUSP00000158971 TRANSLATION protein_coding - - - 446.0 0.0 7.474 2.4 171.1 0.0 -4,-5 1.0 1 12.737 PRINCIPAL:1 ENSMUSG00000034818 Celf5 ENSMUST00000118763 ENSMUSP00000113675 TRANSLATION protein_coding - CCDS48644.1 1 395.0 0.0 5.474 0.4 110.6 0.0 -4,-5 0.0199 2 4.368 MINOR ENSMUSG00000034818 Celf5 ENSMUST00000119060 ENSMUSP00000113546 TRANSLATION protein_coding - CCDS78867.1 1 319.0 0.0 3.724 2.9 60.3 0.0 -4,-6 0.4251 2 1.0 MINOR ENSMUSG00000034818 Celf5 ENSMUST00000145375 - NO_TRANSLATION retained_intron ENSMUSG00000034818 Celf5 ENSMUST00000120508 ENSMUSP00000113592 TRANSLATION protein_coding - CCDS78869.1 1 394.0 0.0 5.474 0.4 110.6 0.0 -4,-5 0.0199 2 4.368 MINOR ENSMUSG00000034818 Celf5 ENSMUST00000141207 - NO_TRANSLATION retained_intron ENSMUSG00000090854 Gm4340 ENSMUST00000181615 ENSMUSP00000137824 TRANSLATION protein_coding - - 2 265.0 0.0 0.64 0.0 68.8 0.0 -4,-5 0.7785 - 12.0 PRINCIPAL:1 ENSMUSG00000090854 Gm4340 ENSMUST00000181036 ENSMUSP00000137984 TRANSLATION protein_coding - - 3 265.0 0.0 0.64 0.0 68.8 0.0 -4,-5 0.7785 - 12.0 PRINCIPAL:1 ENSMUSG00000060935 Tmem263 ENSMUST00000095383 ENSMUSP00000093030 TRANSLATION protein_coding - CCDS24087.1 1 115.0 0.0 0.0 33.9 151.9 0.0 -4,-5 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000060935 Tmem263 ENSMUST00000216771 ENSMUSP00000149447 TRANSLATION nonsense_mediated_decay - CCDS24087.1 1 115.0 0.0 0.0 33.9 151.9 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000094076 Gm4767 ENSMUST00000188096 ENSMUSP00000139439 TRANSLATION protein_coding - - 1 499.0 56.0 1.0 0.4 345.1 0.0 -4,-5 0.8365 - 18.0 PRINCIPAL:1 ENSMUSG00000094076 Gm4767 ENSMUST00000099439 ENSMUSP00000097038 TRANSLATION protein_coding start - 5 498.0 56.0 1.0 0.4 345.1 0.0 -4,-5 0.5211 - -2.0 MINOR ENSMUSG00000032977 Slx9 ENSMUST00000217681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032977 Slx9 ENSMUST00000218414 ENSMUSP00000151768 TRANSLATION protein_coding start - 1 200.0 0.0 0.0 0.0 85.9 0.0 -3,-6 0.0258 3 -2.0 MINOR ENSMUSG00000032977 Slx9 ENSMUST00000045454 ENSMUSP00000036382 TRANSLATION protein_coding - CCDS23955.1 1 219.0 0.0 0.0 7.7 85.9 0.0 -4,-1 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000019831 Wasf1 ENSMUST00000105509 ENSMUSP00000101148 TRANSLATION protein_coding - CCDS23801.1 5 559.0 0.0 4.165 16.5 30.1 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000019831 Wasf1 ENSMUST00000019975 ENSMUSP00000019975 TRANSLATION protein_coding - CCDS23801.1 1 559.0 0.0 4.165 16.5 30.1 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000004931 Apba3 ENSMUST00000219460 ENSMUSP00000151423 TRANSLATION protein_coding start/stop - 5 239.0 0.0 3.8 0.0 166.5 0.0 -4,-7 0.0003 4 -2.0 MINOR ENSMUSG00000004931 Apba3 ENSMUST00000219304 ENSMUSP00000151614 TRANSLATION protein_coding stop - 2 131.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004931 Apba3 ENSMUST00000057798 ENSMUSP00000050995 TRANSLATION protein_coding - CCDS24050.1 1 571.0 0.0 7.53 6.5 240.0 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000004931 Apba3 ENSMUST00000217688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004931 Apba3 ENSMUST00000218297 ENSMUSP00000151384 TRANSLATION protein_coding start - 3 164.0 0.0 1.91 0.0 45.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000004931 Apba3 ENSMUST00000218146 - NO_TRANSLATION retained_intron ENSMUSG00000004931 Apba3 ENSMUST00000219294 - NO_TRANSLATION retained_intron ENSMUSG00000004931 Apba3 ENSMUST00000219919 - NO_TRANSLATION retained_intron ENSMUSG00000004931 Apba3 ENSMUST00000217754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004931 Apba3 ENSMUST00000218742 ENSMUSP00000151924 TRANSLATION protein_coding stop - 3 108.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004931 Apba3 ENSMUST00000220297 ENSMUSP00000151985 TRANSLATION protein_coding - CCDS24050.1 5 571.0 0.0 7.53 6.5 240.0 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000019952 Poc1b ENSMUST00000162704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019952 Poc1b ENSMUST00000219884 ENSMUSP00000151221 TRANSLATION nonsense_mediated_decay - - 1 349.0 0.0 6.84 0.0 210.2 0.0 -4,-5 0.071 2 -2.0 MINOR ENSMUSG00000019952 Poc1b ENSMUST00000159043 ENSMUSP00000123719 TRANSLATION nonsense_mediated_decay start - 5 98.0 0.0 1.04 0.0 35.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019952 Poc1b ENSMUST00000162847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019952 Poc1b ENSMUST00000220019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019952 Poc1b ENSMUST00000159990 ENSMUSP00000125423 TRANSLATION protein_coding - - 1 434.0 0.0 5.91 6.3 184.5 0.0 -4,-7 0.443 2 10.536 MINOR ENSMUSG00000019952 Poc1b ENSMUST00000159228 ENSMUSP00000124144 TRANSLATION protein_coding - - 1 449.0 0.0 6.84 3.7 210.2 0.0 -4,-5 0.337 3 12.987 MINOR ENSMUSG00000019952 Poc1b ENSMUST00000020113 ENSMUSP00000020113 TRANSLATION protein_coding - CCDS36045.1 1 476.0 0.0 6.84 9.2 210.2 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000034994 Eef2 ENSMUST00000047864 ENSMUSP00000046101 TRANSLATION protein_coding - CCDS35993.1 1 858.0 12.0 11.8 32.9 511.4 0.0 -4,-5 1.0 45 22.0 PRINCIPAL:1 ENSMUSG00000034994 Eef2 ENSMUST00000219497 - NO_TRANSLATION retained_intron ENSMUSG00000034994 Eef2 ENSMUST00000219943 - NO_TRANSLATION retained_intron ENSMUSG00000058297 Spock2 ENSMUST00000121820 ENSMUSP00000113115 TRANSLATION protein_coding - CCDS35910.1 1 423.0 6.0 2.725 2.5 214.7 0.0 3,-2 1.0 6 15.0 PRINCIPAL:2 ENSMUSG00000058297 Spock2 ENSMUST00000138976 - NO_TRANSLATION retained_intron ENSMUSG00000058297 Spock2 ENSMUST00000165024 ENSMUSP00000127155 TRANSLATION protein_coding - - 5 423.0 6.0 2.725 2.5 214.7 0.0 3,-2 0.7403 5 15.0 ALTERNATIVE:2 ENSMUSG00000047712 Ust ENSMUST00000061601 ENSMUSP00000052017 TRANSLATION protein_coding - CCDS35835.1 1 407.0 0.0 2.585 7.7 119.7 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000047712 Ust ENSMUST00000219116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039910 Cited2 ENSMUST00000219558 ENSMUSP00000151452 TRANSLATION protein_coding - CCDS23708.1 - 269.0 0.0 0.2 7.3 343.9 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000039910 Cited2 ENSMUST00000038107 ENSMUSP00000038405 TRANSLATION protein_coding - CCDS23708.1 1 269.0 0.0 0.2 7.3 343.9 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000039910 Cited2 ENSMUST00000218370 ENSMUSP00000151600 TRANSLATION protein_coding stop - 1 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019948 Actr6 ENSMUST00000218568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019948 Actr6 ENSMUST00000020109 ENSMUSP00000020109 TRANSLATION protein_coding - CCDS24118.1 1 396.0 19.0 9.75 31.8 279.6 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000019948 Actr6 ENSMUST00000218442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019948 Actr6 ENSMUST00000220059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019948 Actr6 ENSMUST00000218965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019948 Actr6 ENSMUST00000220388 ENSMUSP00000151218 TRANSLATION nonsense_mediated_decay - - 3 88.0 5.0 2.5 0.0 44.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000094632 Gm10310 ENSMUST00000213667 ENSMUSP00000150490 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 7.6 186.1 0.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051652 Lrrc3 ENSMUST00000057608 ENSMUSP00000059570 TRANSLATION protein_coding - CCDS23960.1 1 257.0 0.0 1.0 6.9 92.0 0.0 -2,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000020018 Snrpf ENSMUST00000020203 ENSMUSP00000020203 TRANSLATION protein_coding - CCDS48672.1 1 86.0 5.0 2.5 24.1 75.5 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000040653 Ppp1r14c ENSMUST00000217573 ENSMUSP00000149688 TRANSLATION protein_coding - - 1 125.0 0.0 0.95 0.0 44.1 0.0 -4,-6 0.0 2 4.296 MINOR ENSMUSG00000040653 Ppp1r14c ENSMUST00000043374 ENSMUSP00000045110 TRANSLATION protein_coding - CCDS56669.1 1 164.0 0.0 2.03 7.3 119.3 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000020024 Cep83 ENSMUST00000220052 - NO_TRANSLATION retained_intron ENSMUSG00000020024 Cep83 ENSMUST00000218076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020024 Cep83 ENSMUST00000220352 - NO_TRANSLATION retained_intron ENSMUSG00000020024 Cep83 ENSMUST00000020212 ENSMUSP00000020212 TRANSLATION protein_coding - CCDS36041.1 1 692.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.9183 5 0.0 PRINCIPAL:1 ENSMUSG00000020067 Mypn ENSMUST00000095580 ENSMUSP00000093240 TRANSLATION protein_coding - CCDS48584.1 1 1315.0 0.0 9.398 5.8 343.0 0.0 -4,-5 1.0 26 14.0 PRINCIPAL:1 ENSMUSG00000020067 Mypn ENSMUST00000218978 ENSMUSP00000151637 TRANSLATION protein_coding - - 1 200.0 0.0 2.8 0.0 89.2 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000020329 Polrmt ENSMUST00000160595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020329 Polrmt ENSMUST00000161098 - NO_TRANSLATION retained_intron ENSMUSG00000020329 Polrmt ENSMUST00000161375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020329 Polrmt ENSMUST00000159016 ENSMUSP00000124936 TRANSLATION protein_coding - - 1 1133.0 4.0 15.812 0.0 638.8 0.0 -4,0 0.0652 10 8.926 MINOR ENSMUSG00000020329 Polrmt ENSMUST00000161765 - NO_TRANSLATION retained_intron ENSMUSG00000020329 Polrmt ENSMUST00000159082 - NO_TRANSLATION retained_intron ENSMUSG00000020329 Polrmt ENSMUST00000162687 - NO_TRANSLATION retained_intron ENSMUSG00000020329 Polrmt ENSMUST00000159289 - NO_TRANSLATION retained_intron ENSMUSG00000020329 Polrmt ENSMUST00000162679 - NO_TRANSLATION retained_intron ENSMUSG00000020329 Polrmt ENSMUST00000160838 - NO_TRANSLATION retained_intron ENSMUSG00000020329 Polrmt ENSMUST00000020580 ENSMUSP00000020580 TRANSLATION protein_coding - CCDS23987.1 1 1207.0 4.0 16.612 0.1 730.0 0.0 -4,0 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000020329 Polrmt ENSMUST00000162694 ENSMUSP00000124556 TRANSLATION nonsense_mediated_decay - - 1 903.0 1.0 9.0 0.0 292.7 0.0 -4,0 0.008 7 -2.0 MINOR ENSMUSG00000020329 Polrmt ENSMUST00000161662 ENSMUSP00000124230 TRANSLATION protein_coding start - 5 393.0 3.0 8.282 0.0 329.9 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000020166 Cnot2 ENSMUST00000164088 ENSMUSP00000127830 TRANSLATION protein_coding - CCDS24185.2 1 499.0 0.0 5.0 4.5 106.6 0.0 -4,-5 0.4545 11 12.972 MINOR ENSMUSG00000020166 Cnot2 ENSMUST00000167706 ENSMUSP00000128837 TRANSLATION protein_coding - - 5 490.0 0.0 5.0 0.0 106.6 0.0 -4,-6 0.0221 12 12.0 MINOR ENSMUSG00000020166 Cnot2 ENSMUST00000169921 ENSMUSP00000132152 TRANSLATION protein_coding - CCDS36064.1 1 540.0 0.0 5.0 11.8 106.6 0.0 -4,-6 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000020166 Cnot2 ENSMUST00000171214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020166 Cnot2 ENSMUST00000218490 ENSMUSP00000151847 TRANSLATION nonsense_mediated_decay - - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020166 Cnot2 ENSMUST00000105267 ENSMUSP00000100902 TRANSLATION protein_coding - CCDS36064.1 1 540.0 0.0 5.0 11.8 106.6 0.0 -4,-6 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000020166 Cnot2 ENSMUST00000171944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020166 Cnot2 ENSMUST00000167644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020166 Cnot2 ENSMUST00000219544 - NO_TRANSLATION retained_intron ENSMUSG00000020166 Cnot2 ENSMUST00000166166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020166 Cnot2 ENSMUST00000164383 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020166 Cnot2 ENSMUST00000165527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020166 Cnot2 ENSMUST00000169937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020166 Cnot2 ENSMUST00000020374 ENSMUSP00000020374 TRANSLATION protein_coding - CCDS36065.1 1 109.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.027 1 0.0 MINOR ENSMUSG00000020166 Cnot2 ENSMUST00000169507 ENSMUSP00000128720 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020166 Cnot2 ENSMUST00000218744 ENSMUSP00000151501 TRANSLATION protein_coding stop - 3 78.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000020166 Cnot2 ENSMUST00000105265 ENSMUSP00000100900 TRANSLATION protein_coding - - 1 455.0 0.0 5.0 6.3 106.6 0.0 -4,-2 0.641 11 13.473 MINOR ENSMUSG00000020166 Cnot2 ENSMUST00000169576 ENSMUSP00000130192 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000020166 Cnot2 ENSMUST00000168036 ENSMUSP00000132315 TRANSLATION protein_coding - CCDS24185.2 5 499.0 0.0 5.0 4.5 106.6 0.0 -4,-5 0.4545 11 12.972 MINOR ENSMUSG00000047669 Msl3l2 ENSMUST00000217668 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047669 Msl3l2 ENSMUST00000063138 ENSMUSP00000051220 TRANSLATION protein_coding - CCDS48561.1 1 371.0 0.0 0.2 0.4 195.7 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000037031 Tspan15 ENSMUST00000219106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037031 Tspan15 ENSMUST00000220143 - NO_TRANSLATION retained_intron ENSMUSG00000037031 Tspan15 ENSMUST00000047883 ENSMUSP00000047029 TRANSLATION protein_coding - CCDS56705.1 1 294.0 0.0 2.22 13.8 184.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000037031 Tspan15 ENSMUST00000218824 - NO_TRANSLATION retained_intron ENSMUSG00000037031 Tspan15 ENSMUST00000218394 - NO_TRANSLATION retained_intron ENSMUSG00000043822 Adamtsl5 ENSMUST00000105352 ENSMUSP00000100989 TRANSLATION protein_coding - - 1 244.0 3.0 4.75 0.0 35.3 0.0 -1,-3 0.0007 3 7.56 MINOR ENSMUSG00000043822 Adamtsl5 ENSMUST00000138705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043822 Adamtsl5 ENSMUST00000095446 ENSMUSP00000093097 TRANSLATION protein_coding - CCDS48628.1 5 485.0 3.0 5.47 0.3 176.2 0.0 -1,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000043822 Adamtsl5 ENSMUST00000124789 - NO_TRANSLATION retained_intron ENSMUSG00000043822 Adamtsl5 ENSMUST00000137571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043822 Adamtsl5 ENSMUST00000137576 - NO_TRANSLATION retained_intron ENSMUSG00000043822 Adamtsl5 ENSMUST00000128845 - NO_TRANSLATION retained_intron ENSMUSG00000035948 Acss3 ENSMUST00000165067 ENSMUSP00000128209 TRANSLATION protein_coding - CCDS48688.1 5 682.0 20.0 12.65 8.3 421.1 0.0 -3,0 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000035948 Acss3 ENSMUST00000044668 ENSMUSP00000040823 TRANSLATION protein_coding - CCDS24159.1 1 497.0 16.0 8.59 0.1 283.2 0.0 -3,0 0.008 9 3.336 MINOR ENSMUSG00000035948 Acss3 ENSMUST00000065567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040021 Lats1 ENSMUST00000217931 ENSMUSP00000151533 TRANSLATION protein_coding - CCDS48494.1 1 1129.0 16.0 1.38 12.3 240.1 0.0 -4,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000040021 Lats1 ENSMUST00000165952 ENSMUSP00000132078 TRANSLATION protein_coding - CCDS48494.1 1 1129.0 16.0 1.38 12.3 240.1 0.0 -4,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000095970 Gm19402 ENSMUST00000180297 ENSMUSP00000136066 TRANSLATION protein_coding - CCDS56723.1 - 266.0 0.0 0.0 0.0 62.2 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069712 Semp2l2b ENSMUST00000092672 ENSMUSP00000097613 TRANSLATION protein_coding - CCDS48519.1 - 495.0 5.0 0.8 0.0 145.9 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000048701 Ccdc6 ENSMUST00000156001 ENSMUSP00000115678 TRANSLATION protein_coding start - 3 137.0 0.0 0.0 0.0 83.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048701 Ccdc6 ENSMUST00000147545 ENSMUSP00000123374 TRANSLATION protein_coding - CCDS48591.1 5 469.0 0.0 0.0 2.4 496.9 0.0 -4,-5 1.0 7 7.0 PRINCIPAL:1 ENSMUSG00000048701 Ccdc6 ENSMUST00000135607 ENSMUSP00000116408 TRANSLATION protein_coding start - 2 136.0 0.0 0.0 0.0 67.8 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000048701 Ccdc6 ENSMUST00000145990 - NO_TRANSLATION retained_intron ENSMUSG00000013858 Tmem259 ENSMUST00000124889 - NO_TRANSLATION retained_intron ENSMUSG00000013858 Tmem259 ENSMUST00000132080 - NO_TRANSLATION retained_intron ENSMUSG00000013858 Tmem259 ENSMUST00000126383 - NO_TRANSLATION retained_intron ENSMUSG00000013858 Tmem259 ENSMUST00000052885 ENSMUSP00000056792 TRANSLATION protein_coding - CCDS24002.1 1 574.0 0.0 0.0 0.1 561.8 2.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000013858 Tmem259 ENSMUST00000124536 ENSMUSP00000119572 TRANSLATION protein_coding start - 1 568.0 0.0 0.0 0.0 536.4 2.0 -4,-1 0.1046 4 -2.0 MINOR ENSMUSG00000034163 Zfc3h1 ENSMUST00000143751 - NO_TRANSLATION retained_intron ENSMUSG00000034163 Zfc3h1 ENSMUST00000127283 - NO_TRANSLATION retained_intron ENSMUSG00000034163 Zfc3h1 ENSMUST00000036044 ENSMUSP00000044069 TRANSLATION protein_coding - CCDS36062.1 1 1992.0 0.0 0.0 4.1 33.2 0.0 -4,-5 1.0 17 8.0 PRINCIPAL:1 ENSMUSG00000034163 Zfc3h1 ENSMUST00000141246 - NO_TRANSLATION retained_intron ENSMUSG00000092210 A930009A15Rik ENSMUST00000173620 ENSMUSP00000134099 TRANSLATION protein_coding - CCDS56749.1 1 118.0 5.0 0.0 0.0 0.0 0.0 -4,-2 0.8602 - 5.0 PRINCIPAL:1 ENSMUSG00000019834 Slc22a16 ENSMUST00000019978 ENSMUSP00000019978 TRANSLATION protein_coding - - 1 670.0 0.0 3.02 0.0 82.0 13.0 -4,0 0.1242 3 5.4 ALTERNATIVE:2 ENSMUSG00000019834 Slc22a16 ENSMUST00000078314 ENSMUSP00000077428 TRANSLATION protein_coding - CCDS23796.1 1 649.0 0.0 3.32 0.0 82.0 13.0 -4,-7 1.0 3 6.0 PRINCIPAL:2 ENSMUSG00000020038 Cry1 ENSMUST00000020227 ENSMUSP00000020227 TRANSLATION protein_coding - CCDS24089.1 1 606.0 47.0 10.0 0.0 416.5 0.0 -4,-7 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000020038 Cry1 ENSMUST00000214675 ENSMUSP00000150910 TRANSLATION protein_coding start/stop - 3 59.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020038 Cry1 ENSMUST00000214248 - NO_TRANSLATION retained_intron ENSMUSG00000020038 Cry1 ENSMUST00000214805 - NO_TRANSLATION retained_intron ENSMUSG00000038240 Pdss2 ENSMUST00000162008 ENSMUSP00000124440 TRANSLATION protein_coding start - 3 138.0 0.0 1.6 0.0 0.0 0.0 -1,-4 0.0 5 -2.0 MINOR ENSMUSG00000038240 Pdss2 ENSMUST00000162758 - NO_TRANSLATION retained_intron ENSMUSG00000038240 Pdss2 ENSMUST00000160108 - NO_TRANSLATION retained_intron ENSMUSG00000038240 Pdss2 ENSMUST00000095725 ENSMUSP00000093393 TRANSLATION protein_coding - CCDS35891.1 1 401.0 0.0 3.115 7.9 71.3 0.0 -4,0 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000038240 Pdss2 ENSMUST00000160823 ENSMUSP00000124046 TRANSLATION nonsense_mediated_decay - - 1 348.0 0.0 2.482 0.0 71.3 0.0 -4,0 0.0202 6 -2.0 MINOR ENSMUSG00000038240 Pdss2 ENSMUST00000159139 ENSMUSP00000124864 TRANSLATION protein_coding - CCDS48552.1 1 352.0 0.0 2.515 0.0 71.3 0.0 -4,0 0.0824 6 10.8 MINOR ENSMUSG00000039835 Nhsl1 ENSMUST00000160602 - NO_TRANSLATION retained_intron ENSMUSG00000039835 Nhsl1 ENSMUST00000037341 ENSMUSP00000040799 TRANSLATION protein_coding - CCDS35853.1 5 1587.0 0.0 0.066 0.1 812.1 0.0 -4,-2 0.7282 15 6.702 MINOR ENSMUSG00000039835 Nhsl1 ENSMUST00000160547 - NO_TRANSLATION retained_intron ENSMUSG00000039835 Nhsl1 ENSMUST00000100054 ENSMUSP00000097631 TRANSLATION protein_coding - CCDS48508.1 5 1583.0 0.0 0.066 0.1 812.1 0.0 -4,-7 0.7047 15 6.702 MINOR ENSMUSG00000039835 Nhsl1 ENSMUST00000161510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039835 Nhsl1 ENSMUST00000207038 ENSMUSP00000147021 TRANSLATION protein_coding - - 5 1617.0 0.0 0.566 0.1 812.1 0.0 -4,-1 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000039835 Nhsl1 ENSMUST00000159299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039835 Nhsl1 ENSMUST00000160600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039835 Nhsl1 ENSMUST00000162891 ENSMUSP00000124072 TRANSLATION protein_coding stop - 2 943.0 0.0 0.066 0.0 812.1 0.0 -4,-7 0.201 7 -2.0 MINOR ENSMUSG00000096442 Taar8a ENSMUST00000051133 ENSMUSP00000062719 TRANSLATION protein_coding - CCDS23745.1 - 344.0 0.0 1.0 10.3 188.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095483 Or6c206 ENSMUST00000073704 ENSMUSP00000073383 TRANSLATION protein_coding - CCDS24311.1 - 312.0 0.0 1.0 12.5 168.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095483 Or6c206 ENSMUST00000213512 ENSMUSP00000150656 TRANSLATION protein_coding - CCDS24311.1 5 312.0 0.0 1.0 12.5 168.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000009292 Trpm2 ENSMUST00000140471 - NO_TRANSLATION retained_intron ENSMUSG00000009292 Trpm2 ENSMUST00000105399 ENSMUSP00000101038 TRANSLATION protein_coding - - 1 109.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000009292 Trpm2 ENSMUST00000217806 - NO_TRANSLATION retained_intron ENSMUSG00000009292 Trpm2 ENSMUST00000153842 - NO_TRANSLATION retained_intron ENSMUSG00000009292 Trpm2 ENSMUST00000154996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009292 Trpm2 ENSMUST00000105400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009292 Trpm2 ENSMUST00000105401 ENSMUSP00000101040 TRANSLATION protein_coding - CCDS48611.1 1 1506.0 0.0 26.68 0.4 71.1 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000009292 Trpm2 ENSMUST00000126206 - NO_TRANSLATION retained_intron ENSMUSG00000009292 Trpm2 ENSMUST00000219997 ENSMUSP00000151231 TRANSLATION protein_coding stop - 2 104.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000009292 Trpm2 ENSMUST00000138238 - NO_TRANSLATION retained_intron ENSMUSG00000042801 Or6c2b ENSMUST00000215453 ENSMUSP00000149352 TRANSLATION protein_coding - CCDS24306.1 5 312.0 0.0 1.0 12.5 161.0 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042801 Or6c2b ENSMUST00000050915 ENSMUSP00000059078 TRANSLATION protein_coding - CCDS24306.1 - 312.0 0.0 1.0 12.5 161.0 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042801 Or6c2b ENSMUST00000216906 ENSMUSP00000149008 TRANSLATION protein_coding - CCDS24306.1 5 312.0 0.0 1.0 12.5 161.0 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060187 Lrrc10 ENSMUST00000073834 ENSMUSP00000073502 TRANSLATION protein_coding - CCDS24189.1 - 274.0 0.0 1.0 3.5 42.7 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000096497 Or6c5c ENSMUST00000213329 ENSMUSP00000149391 TRANSLATION protein_coding - CCDS24318.1 5 312.0 0.0 1.0 12.5 165.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096497 Or6c5c ENSMUST00000077836 ENSMUSP00000077005 TRANSLATION protein_coding - CCDS24318.1 - 312.0 0.0 1.0 12.5 165.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004665 Cnn2 ENSMUST00000004784 ENSMUSP00000004784 TRANSLATION protein_coding - CCDS24003.1 1 305.0 0.0 5.0 15.9 226.7 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000004665 Cnn2 ENSMUST00000105374 ENSMUSP00000101013 TRANSLATION protein_coding - - 5 266.0 0.0 4.0 1.3 214.1 0.0 -4,-7 0.0663 10 9.326 MINOR ENSMUSG00000020010 Vnn3 ENSMUST00000020190 ENSMUSP00000020190 TRANSLATION protein_coding - CCDS23734.1 1 500.0 0.0 7.0 2.8 60.3 0.0 0,-3 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000020076 Ddx50 ENSMUST00000020270 ENSMUSP00000020270 TRANSLATION protein_coding - CCDS23892.1 1 734.0 12.0 10.325 2.3 356.9 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000020076 Ddx50 ENSMUST00000218372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020076 Ddx50 ENSMUST00000218158 - NO_TRANSLATION retained_intron ENSMUSG00000020076 Ddx50 ENSMUST00000217970 - NO_TRANSLATION retained_intron ENSMUSG00000020076 Ddx50 ENSMUST00000218224 - NO_TRANSLATION retained_intron ENSMUSG00000020076 Ddx50 ENSMUST00000220370 - NO_TRANSLATION retained_intron ENSMUSG00000020076 Ddx50 ENSMUST00000218304 ENSMUSP00000151469 TRANSLATION protein_coding start - 3 134.0 0.0 1.2 0.0 26.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020076 Ddx50 ENSMUST00000219076 - NO_TRANSLATION retained_intron ENSMUSG00000113949 Scamp4 ENSMUST00000079883 ENSMUSP00000078808 TRANSLATION protein_coding - CCDS24028.1 1 230.0 0.0 5.88 24.6 235.8 4.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000113949 Scamp4 ENSMUST00000223256 ENSMUSP00000152665 TRANSLATION nonsense_mediated_decay - - 2 41.0 0.0 1.165 0.0 40.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000113949 Scamp4 ENSMUST00000221387 ENSMUSP00000152469 TRANSLATION protein_coding stop - 5 24.0 0.0 0.83 0.0 0.0 0.0 0,-5 0.0035 - -2.0 MINOR ENSMUSG00000113949 Scamp4 ENSMUST00000180350 ENSMUSP00000137003 TRANSLATION protein_coding - CCDS24028.1 1 230.0 0.0 5.88 24.6 235.8 4.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000113949 Scamp4 ENSMUST00000220669 ENSMUSP00000152449 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 1.33 0.0 55.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000113949 Scamp4 ENSMUST00000221236 - NO_TRANSLATION retained_intron ENSMUSG00000113949 Scamp4 ENSMUST00000221032 ENSMUSP00000152749 TRANSLATION protein_coding stop - 5 45.0 0.0 1.33 0.0 55.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019988 Nedd1 ENSMUST00000214417 - NO_TRANSLATION retained_intron ENSMUSG00000019988 Nedd1 ENSMUST00000020163 ENSMUSP00000020163 TRANSLATION protein_coding - CCDS24123.1 1 660.0 0.0 3.4 10.6 38.7 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000019988 Nedd1 ENSMUST00000216086 ENSMUSP00000150817 TRANSLATION nonsense_mediated_decay - - 5 48.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019988 Nedd1 ENSMUST00000215970 - NO_TRANSLATION retained_intron ENSMUSG00000074639 Rdh16f2 ENSMUST00000092058 ENSMUSP00000089691 TRANSLATION protein_coding - CCDS24254.1 1 318.0 27.0 4.0 15.9 144.9 0.0 -1,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000019943 Atp2b1 ENSMUST00000218948 ENSMUSP00000151441 TRANSLATION protein_coding start - 5 245.0 0.0 3.75 0.0 133.5 8.0 -4,-2 0.0022 3 -2.0 MINOR ENSMUSG00000019943 Atp2b1 ENSMUST00000220124 ENSMUSP00000151970 TRANSLATION protein_coding start - 5 279.0 0.0 4.23 0.0 176.9 8.0 -4,-6 0.0022 4 -2.0 MINOR ENSMUSG00000019943 Atp2b1 ENSMUST00000218695 - NO_TRANSLATION retained_intron ENSMUSG00000019943 Atp2b1 ENSMUST00000020107 ENSMUSP00000020107 TRANSLATION protein_coding - CCDS24145.1 5 1220.0 3.0 16.52 22.0 537.1 14.0 -4,-5 1.0 21 19.0 PRINCIPAL:1 ENSMUSG00000019943 Atp2b1 ENSMUST00000219090 ENSMUSP00000151934 TRANSLATION protein_coding start - 2 175.0 0.0 2.166 0.0 66.1 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000019943 Atp2b1 ENSMUST00000219557 ENSMUSP00000151791 TRANSLATION protein_coding stop - 2 212.0 0.0 0.53 0.0 57.1 4.0 -4,-5 0.0022 6 -2.0 MINOR ENSMUSG00000019943 Atp2b1 ENSMUST00000218419 - NO_TRANSLATION retained_intron ENSMUSG00000019943 Atp2b1 ENSMUST00000219624 ENSMUSP00000151598 TRANSLATION protein_coding stop - 5 430.0 0.0 3.66 0.0 149.0 6.0 -4,-5 0.0037 10 -2.0 MINOR ENSMUSG00000019943 Atp2b1 ENSMUST00000220104 ENSMUSP00000151572 TRANSLATION protein_coding start - 5 317.0 0.0 3.48 0.0 175.5 7.0 -1,-4 0.0034 8 -2.0 MINOR ENSMUSG00000019943 Atp2b1 ENSMUST00000220358 - NO_TRANSLATION retained_intron ENSMUSG00000019943 Atp2b1 ENSMUST00000218312 - NO_TRANSLATION retained_intron ENSMUSG00000038876 Rnf146 ENSMUST00000162335 ENSMUSP00000124772 TRANSLATION protein_coding - CCDS48529.1 1 359.0 8.0 1.6 9.0 90.3 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000038876 Rnf146 ENSMUST00000161508 ENSMUSP00000124814 TRANSLATION protein_coding stop - 2 223.0 8.0 1.6 0.0 90.3 0.0 -4,-5 0.0302 2 -2.0 MINOR ENSMUSG00000038876 Rnf146 ENSMUST00000160144 ENSMUSP00000124288 TRANSLATION protein_coding - CCDS48529.1 1 359.0 8.0 1.6 9.0 90.3 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000038876 Rnf146 ENSMUST00000214896 ENSMUSP00000149976 TRANSLATION protein_coding stop - 2 168.0 8.0 1.0 0.0 88.7 0.0 -4,-5 0.0183 1 -2.0 MINOR ENSMUSG00000038876 Rnf146 ENSMUST00000037548 ENSMUSP00000037224 TRANSLATION protein_coding - CCDS48529.1 2 359.0 8.0 1.6 9.0 90.3 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000038876 Rnf146 ENSMUST00000160372 ENSMUSP00000124215 TRANSLATION protein_coding - CCDS48529.1 1 359.0 8.0 1.6 9.0 90.3 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000054708 Ankrd24 ENSMUST00000123896 ENSMUSP00000116603 TRANSLATION protein_coding stop - 2 65.0 0.0 1.56 0.0 34.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054708 Ankrd24 ENSMUST00000153573 ENSMUSP00000118811 TRANSLATION protein_coding stop - 3 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0181 - -2.0 MINOR ENSMUSG00000054708 Ankrd24 ENSMUST00000123305 ENSMUSP00000118418 TRANSLATION nonsense_mediated_decay start - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054708 Ankrd24 ENSMUST00000132458 ENSMUSP00000121709 TRANSLATION protein_coding start - 5 177.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000054708 Ankrd24 ENSMUST00000140345 ENSMUSP00000123618 TRANSLATION protein_coding stop - 2 133.0 0.0 1.416 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000054708 Ankrd24 ENSMUST00000119336 ENSMUSP00000112932 TRANSLATION protein_coding - CCDS36001.1 5 985.0 0.0 5.05 0.0 86.1 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000054708 Ankrd24 ENSMUST00000129622 ENSMUSP00000122451 TRANSLATION protein_coding stop - 3 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0289 - -2.0 MINOR ENSMUSG00000054708 Ankrd24 ENSMUST00000137978 - NO_TRANSLATION retained_intron ENSMUSG00000054708 Ankrd24 ENSMUST00000129491 - NO_TRANSLATION retained_intron ENSMUSG00000054708 Ankrd24 ENSMUST00000154707 - NO_TRANSLATION retained_intron ENSMUSG00000054708 Ankrd24 ENSMUST00000142390 - NO_TRANSLATION retained_intron ENSMUSG00000054708 Ankrd24 ENSMUST00000126323 ENSMUSP00000118286 TRANSLATION protein_coding stop - 5 131.0 0.0 2.2 0.0 49.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000054708 Ankrd24 ENSMUST00000152892 ENSMUSP00000123676 TRANSLATION protein_coding stop - 5 70.0 0.0 1.85 0.0 44.9 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000054708 Ankrd24 ENSMUST00000123993 ENSMUSP00000117975 TRANSLATION nonsense_mediated_decay - - 1 85.0 0.0 0.75 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000112864 Gm18596 ENSMUST00000218133 ENSMUSP00000151937 TRANSLATION protein_coding - - - 280.0 0.0 0.0 0.0 97.4 0.0 -4,-5 0.7211 - 6.0 PRINCIPAL:1 ENSMUSG00000009647 Mcu ENSMUST00000161168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009647 Mcu ENSMUST00000009791 ENSMUSP00000009791 TRANSLATION protein_coding - - 1 201.0 0.0 3.75 0.0 229.7 2.0 -4,-7 0.0078 9 6.786 MINOR ENSMUSG00000009647 Mcu ENSMUST00000161435 ENSMUSP00000124087 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 0.0 0.0 0.0 0.0 1,0 0.0024 - -2.0 MINOR ENSMUSG00000009647 Mcu ENSMUST00000162012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009647 Mcu ENSMUST00000020312 ENSMUSP00000020312 TRANSLATION protein_coding - CCDS23866.2 5 350.0 0.0 5.75 7.2 249.9 2.0 1,0 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000020023 Tmcc3 ENSMUST00000147869 - NO_TRANSLATION retained_intron ENSMUSG00000020023 Tmcc3 ENSMUST00000148910 ENSMUSP00000121456 TRANSLATION protein_coding stop - 3 76.0 0.0 0.0 0.0 57.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000020023 Tmcc3 ENSMUST00000148823 ENSMUSP00000119496 TRANSLATION protein_coding stop - 2 161.0 0.0 0.0 0.0 151.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000020023 Tmcc3 ENSMUST00000117460 ENSMUSP00000112669 TRANSLATION protein_coding - CCDS48675.1 1 446.0 0.0 0.0 17.1 523.7 1.0 -4,-6 0.8386 8 8.616 MINOR ENSMUSG00000020023 Tmcc3 ENSMUST00000132743 ENSMUSP00000119751 TRANSLATION protein_coding stop - 5 119.0 0.0 0.0 0.0 136.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000020023 Tmcc3 ENSMUST00000065060 ENSMUSP00000063264 TRANSLATION protein_coding - CCDS24134.1 1 477.0 0.0 0.0 25.6 523.7 1.0 -4,-5 1.0 9 10.0 PRINCIPAL:1 ENSMUSG00000020023 Tmcc3 ENSMUST00000121471 ENSMUSP00000113122 TRANSLATION protein_coding - CCDS48675.1 1 446.0 0.0 0.0 17.1 523.7 1.0 -4,-6 0.8386 8 8.616 MINOR ENSMUSG00000020023 Tmcc3 ENSMUST00000117929 ENSMUSP00000112401 TRANSLATION protein_coding - CCDS48675.1 1 446.0 0.0 0.0 17.1 523.7 1.0 -4,-6 0.8386 8 8.616 MINOR ENSMUSG00000020023 Tmcc3 ENSMUST00000139230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069583 Krtap12-1 ENSMUST00000092370 ENSMUSP00000090024 TRANSLATION protein_coding - CCDS23959.1 - 130.0 0.0 0.0 1.8 27.4 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000091101 Gm4302 ENSMUST00000168769 ENSMUSP00000131605 TRANSLATION protein_coding - - - 291.0 0.0 0.6 0.0 69.6 0.0 -4,-5 0.7785 - 12.0 PRINCIPAL:1 ENSMUSG00000047648 Fbxo30 ENSMUST00000129456 ENSMUSP00000117687 TRANSLATION protein_coding - CCDS23697.1 1 746.0 16.0 0.0 9.6 296.7 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000047648 Fbxo30 ENSMUST00000070300 ENSMUSP00000068230 TRANSLATION protein_coding - CCDS23697.1 1 746.0 16.0 0.0 9.6 296.7 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000019767 Ccdc170 ENSMUST00000157064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019767 Ccdc170 ENSMUST00000145465 ENSMUSP00000122673 TRANSLATION protein_coding stop - 5 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0145 1 -2.0 MINOR ENSMUSG00000019767 Ccdc170 ENSMUST00000019901 ENSMUSP00000019901 TRANSLATION protein_coding - CCDS56677.1 5 716.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5005 3 0.0 ALTERNATIVE:2 ENSMUSG00000019767 Ccdc170 ENSMUST00000138112 ENSMUSP00000115997 TRANSLATION protein_coding - - 5 722.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6309 3 0.0 PRINCIPAL:4 ENSMUSG00000057134 Ado ENSMUST00000249458 ENSMUSP00000159765 TRANSLATION protein_coding - - - 282.0 3.0 0.2 0.0 221.0 0.0 -4,-7 0.0588 8 11.0 ALTERNATIVE:2 ENSMUSG00000057134 Ado ENSMUST00000075686 ENSMUSP00000075107 TRANSLATION protein_coding - CCDS48588.1 - 256.0 3.0 0.2 2.6 221.0 0.0 -4,-1 1.0 7 12.0 PRINCIPAL:2 ENSMUSG00000069670 Nkain2 ENSMUST00000219125 ENSMUSP00000151959 TRANSLATION protein_coding - - 1 196.0 0.0 1.75 0.0 266.0 2.0 -3,-5 0.0216 - 6.714 MINOR ENSMUSG00000069670 Nkain2 ENSMUST00000092602 ENSMUSP00000090264 TRANSLATION protein_coding start - - 185.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0011 - -2.0 MINOR ENSMUSG00000069670 Nkain2 ENSMUST00000219306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069670 Nkain2 ENSMUST00000191234 ENSMUSP00000140463 TRANSLATION protein_coding - CCDS78805.1 1 208.0 0.0 1.75 33.7 354.1 3.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000069670 Nkain2 ENSMUST00000218645 ENSMUSP00000151255 TRANSLATION protein_coding - - 5 213.0 0.0 1.75 5.4 352.4 3.0 -3,-5 0.2767 - 12.438 MINOR ENSMUSG00000056912 1700017N19Rik ENSMUST00000190708 ENSMUSP00000139797 TRANSLATION protein_coding - - 5 469.0 12.0 0.0 5.3 135.5 0.0 -4,-5 1.0 - 13.298 PRINCIPAL:1 ENSMUSG00000056912 1700017N19Rik ENSMUST00000041162 ENSMUSP00000042828 TRANSLATION protein_coding - CCDS36047.1 1 415.0 4.0 0.0 7.2 42.6 0.0 -4,-5 0.7199 - 3.002 MINOR ENSMUSG00000056912 1700017N19Rik ENSMUST00000186825 ENSMUSP00000140291 TRANSLATION nonsense_mediated_decay - - 5 101.0 12.0 0.0 0.0 137.0 0.0 -4,-5 0.0279 - -2.0 MINOR ENSMUSG00000056912 1700017N19Rik ENSMUST00000188736 ENSMUSP00000140726 TRANSLATION protein_coding - - 5 414.0 4.0 0.0 7.2 42.6 0.0 -4,-5 0.6261 - 3.002 MINOR ENSMUSG00000056912 1700017N19Rik ENSMUST00000190386 ENSMUSP00000140022 TRANSLATION protein_coding - - 5 375.0 4.0 0.0 0.0 42.6 0.0 -4,-5 0.0011 - 1.002 MINOR ENSMUSG00000056912 1700017N19Rik ENSMUST00000191336 ENSMUSP00000140717 TRANSLATION protein_coding stop - 5 195.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056912 1700017N19Rik ENSMUST00000187119 ENSMUSP00000141032 TRANSLATION protein_coding - - 5 374.0 4.0 0.0 2.0 42.6 0.0 -4,-5 0.0876 - 1.324 MINOR ENSMUSG00000056912 1700017N19Rik ENSMUST00000188930 ENSMUSP00000140459 TRANSLATION protein_coding stop - 5 105.0 4.0 0.0 0.0 42.6 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000056912 1700017N19Rik ENSMUST00000191033 ENSMUSP00000139857 TRANSLATION protein_coding start - 5 214.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000056912 1700017N19Rik ENSMUST00000218464 ENSMUSP00000151731 TRANSLATION protein_coding - CCDS36047.1 5 415.0 4.0 0.0 7.2 42.6 0.0 -4,-5 0.7199 - 3.002 MINOR ENSMUSG00000034958 Atcay ENSMUST00000133555 - NO_TRANSLATION retained_intron ENSMUSG00000034958 Atcay ENSMUST00000047408 ENSMUSP00000036721 TRANSLATION protein_coding - CCDS24047.1 1 372.0 0.0 5.35 7.1 257.6 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000034958 Atcay ENSMUST00000146030 ENSMUSP00000118285 TRANSLATION nonsense_mediated_decay - - 5 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000078442 Ccdc105 ENSMUST00000105383 ENSMUSP00000101022 TRANSLATION protein_coding - CCDS48614.1 1 499.0 0.0 0.0 4.5 58.7 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000045591 Olig3 ENSMUST00000053225 ENSMUSP00000057106 TRANSLATION protein_coding - CCDS35855.1 - 273.0 0.0 0.5 16.7 44.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074695 Il22 ENSMUST00000096691 ENSMUSP00000094449 TRANSLATION protein_coding - CCDS36070.1 1 179.0 0.0 3.85 7.2 243.3 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000091381 Vmn2r83 ENSMUST00000233849 ENSMUSP00000156909 TRANSLATION nonsense_mediated_decay - - - 442.0 0.0 1.82 0.0 113.9 0.0 2,-2 0.0018 - -2.0 MINOR ENSMUSG00000091381 Vmn2r83 ENSMUST00000167976 ENSMUSP00000131426 TRANSLATION protein_coding - CCDS48618.1 5 864.0 4.0 4.2 0.4 383.5 8.0 2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091381 Vmn2r83 ENSMUST00000233065 ENSMUSP00000156866 TRANSLATION protein_coding - - - 659.0 4.0 3.88 0.0 324.0 8.0 2,-2 0.0111 - 11.788 MINOR ENSMUSG00000091381 Vmn2r83 ENSMUST00000233629 ENSMUSP00000156663 TRANSLATION nonsense_mediated_decay - - - 70.0 0.0 0.2 0.0 0.0 0.0 2,-2 0.0022 - -2.0 MINOR ENSMUSG00000091381 Vmn2r83 ENSMUST00000233240 ENSMUSP00000156717 TRANSLATION nonsense_mediated_decay - - - 237.0 0.0 1.5 0.0 65.7 0.0 2,-2 0.0012 - -2.0 MINOR ENSMUSG00000025795 Rassf3 ENSMUST00000026902 ENSMUSP00000026902 TRANSLATION protein_coding - CCDS24211.1 1 232.0 0.0 3.3 7.0 153.3 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000025795 Rassf3 ENSMUST00000219500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019843 Fyn ENSMUST00000063091 ENSMUSP00000057707 TRANSLATION protein_coding - CCDS23788.1 1 534.0 17.0 9.95 36.2 478.9 0.0 -4,-5 0.9992 10 18.0 ALTERNATIVE:1 ENSMUSG00000019843 Fyn ENSMUST00000123205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019843 Fyn ENSMUST00000136659 ENSMUSP00000118131 TRANSLATION protein_coding - - 5 482.0 11.0 8.95 17.6 460.1 0.0 -4,-5 0.5148 9 9.316 MINOR ENSMUSG00000019843 Fyn ENSMUST00000157009 ENSMUSP00000117837 TRANSLATION protein_coding stop - 2 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000019843 Fyn ENSMUST00000126486 ENSMUSP00000115233 TRANSLATION protein_coding - CCDS23788.1 1 534.0 17.0 9.95 36.2 478.9 0.0 -4,-5 0.9992 10 18.0 ALTERNATIVE:1 ENSMUSG00000019843 Fyn ENSMUST00000146287 ENSMUSP00000114188 TRANSLATION protein_coding - CCDS23788.1 1 534.0 17.0 9.95 36.2 478.9 0.0 -4,-5 0.9992 10 18.0 ALTERNATIVE:1 ENSMUSG00000019843 Fyn ENSMUST00000135242 ENSMUSP00000117111 TRANSLATION protein_coding - CCDS23788.1 1 534.0 17.0 9.95 36.2 478.9 0.0 -4,-5 0.9992 10 18.0 ALTERNATIVE:1 ENSMUSG00000019843 Fyn ENSMUST00000099967 ENSMUSP00000097547 TRANSLATION protein_coding - CCDS48538.1 1 537.0 17.0 9.95 36.2 482.3 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:3 ENSMUSG00000019843 Fyn ENSMUST00000148152 ENSMUSP00000123445 TRANSLATION protein_coding stop - 3 114.0 0.0 1.2 0.0 36.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000063428 Ddo ENSMUST00000213856 ENSMUSP00000150785 TRANSLATION nonsense_mediated_decay - - 1 82.0 17.0 1.0 0.0 35.6 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000063428 Ddo ENSMUST00000213503 ENSMUSP00000151066 TRANSLATION protein_coding - - 1 174.0 17.0 3.75 0.0 48.5 0.0 0,-3 0.0 4 5.61 MINOR ENSMUSG00000063428 Ddo ENSMUST00000213442 ENSMUSP00000149768 TRANSLATION protein_coding - - 1 182.0 17.0 3.75 0.0 47.1 0.0 0,-3 0.0 4 5.526 MINOR ENSMUSG00000063428 Ddo ENSMUST00000019977 ENSMUSP00000019977 TRANSLATION protein_coding - CCDS23798.1 1 341.0 38.0 4.75 13.4 121.7 0.0 0,-3 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000063428 Ddo ENSMUST00000214102 ENSMUSP00000149767 TRANSLATION protein_coding - - 3 167.0 17.0 3.75 0.0 45.9 0.0 0,-3 0.0001 3 5.454 MINOR ENSMUSG00000063428 Ddo ENSMUST00000216830 ENSMUSP00000150979 TRANSLATION protein_coding - - 1 158.0 17.0 3.75 0.0 49.3 0.0 0,-3 0.0 4 5.658 MINOR ENSMUSG00000063428 Ddo ENSMUST00000214618 - NO_TRANSLATION retained_intron ENSMUSG00000044770 Scml4 ENSMUST00000063063 ENSMUSP00000053157 TRANSLATION protein_coding - CCDS23816.1 1 408.0 0.0 3.35 13.8 223.3 0.0 -4,0 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000044770 Scml4 ENSMUST00000153091 - NO_TRANSLATION retained_intron ENSMUSG00000044770 Scml4 ENSMUST00000136841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044770 Scml4 ENSMUST00000130511 - NO_TRANSLATION retained_intron ENSMUSG00000044770 Scml4 ENSMUST00000127675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044770 Scml4 ENSMUST00000105495 ENSMUSP00000101134 TRANSLATION protein_coding - - 1 177.0 0.0 1.05 0.0 123.1 0.0 -4,0 0.0 - 1.398 MINOR ENSMUSG00000044770 Scml4 ENSMUST00000105494 ENSMUSP00000101133 TRANSLATION protein_coding - - 1 350.0 0.0 3.35 3.3 170.2 0.0 -4,-5 0.137 5 9.534 MINOR ENSMUSG00000044770 Scml4 ENSMUST00000157071 ENSMUSP00000122585 TRANSLATION protein_coding stop - 3 94.0 0.0 0.8 0.0 60.5 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000044770 Scml4 ENSMUST00000125576 ENSMUSP00000118910 TRANSLATION protein_coding stop - 3 224.0 0.0 1.85 0.0 165.8 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000052012 Or10p1 ENSMUST00000214584 ENSMUSP00000150534 TRANSLATION protein_coding - CCDS24324.1 2 310.0 0.0 1.0 7.8 168.3 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000052012 Or10p1 ENSMUST00000037071 ENSMUSP00000040207 TRANSLATION protein_coding - CCDS24324.1 - 310.0 0.0 1.0 7.8 168.3 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000114004 Gm48552 ENSMUST00000156229 ENSMUSP00000152264 TRANSLATION protein_coding - - 2 135.0 0.0 0.6 0.1 0.0 1.0 -4,-6 0.6705 - 6.0 PRINCIPAL:1 ENSMUSG00000114004 Gm48552 ENSMUST00000125635 ENSMUSP00000152767 TRANSLATION protein_coding - - 3 135.0 0.0 0.6 0.1 0.0 1.0 -4,-6 0.6705 - 6.0 PRINCIPAL:1 ENSMUSG00000043670 Diras1 ENSMUST00000055125 ENSMUSP00000055605 TRANSLATION protein_coding - CCDS24040.1 1 198.0 20.0 2.0 36.9 163.4 0.0 -4,-6 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000043670 Diras1 ENSMUST00000144640 ENSMUSP00000120173 TRANSLATION protein_coding stop - 2 108.0 13.0 1.0 0.0 95.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000049872 Calhm5 ENSMUST00000069125 ENSMUSP00000064462 TRANSLATION protein_coding - CCDS35879.1 1 309.0 0.0 2.0 8.7 294.7 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000035486 Plk5 ENSMUST00000105351 ENSMUSP00000100988 TRANSLATION protein_coding - CCDS83729.1 1 595.0 19.0 6.25 0.1 279.7 0.0 -4,-1 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000035486 Plk5 ENSMUST00000152544 - NO_TRANSLATION retained_intron ENSMUSG00000035486 Plk5 ENSMUST00000146826 - NO_TRANSLATION retained_intron ENSMUSG00000035486 Plk5 ENSMUST00000039836 ENSMUSP00000044400 TRANSLATION protein_coding - CCDS35980.1 2 599.0 19.0 6.25 0.1 272.4 0.0 -4,-1 0.4938 1 14.0 ALTERNATIVE:2 ENSMUSG00000020133 2310011J03Rik ENSMUST00000020341 ENSMUSP00000020341 TRANSLATION protein_coding - CCDS24017.1 1 109.0 0.0 0.0 1.1 124.1 0.0 -4,-7 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000019917 Septin10 ENSMUST00000165971 ENSMUSP00000129023 TRANSLATION protein_coding - CCDS48566.1 1 427.0 19.0 7.1 0.0 324.6 0.0 -4,-5 0.2141 11 14.0 ALTERNATIVE:2 ENSMUSG00000019917 Septin10 ENSMUST00000218171 ENSMUSP00000151948 TRANSLATION protein_coding start - 3 196.0 3.0 3.6 0.0 99.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019917 Septin10 ENSMUST00000220156 ENSMUSP00000151293 TRANSLATION protein_coding - - 1 452.0 19.0 7.1 0.4 324.6 0.0 -4,-5 0.7887 12 14.0 PRINCIPAL:2 ENSMUSG00000020205 Phlda1 ENSMUST00000164773 ENSMUSP00000132815 TRANSLATION protein_coding - CCDS24167.2 1 405.0 0.0 0.1 0.1 0.0 0.0 -4,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000020205 Phlda1 ENSMUST00000186359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069539 Scyl2 ENSMUST00000173526 - NO_TRANSLATION retained_intron ENSMUSG00000069539 Scyl2 ENSMUST00000092227 ENSMUSP00000089874 TRANSLATION protein_coding - CCDS78881.1 1 929.0 0.0 13.33 11.4 86.6 0.0 -4,-5 0.9993 17 9.0 ALTERNATIVE:1 ENSMUSG00000069539 Scyl2 ENSMUST00000174429 - NO_TRANSLATION retained_intron ENSMUSG00000069539 Scyl2 ENSMUST00000174575 - NO_TRANSLATION retained_intron ENSMUSG00000069539 Scyl2 ENSMUST00000174252 ENSMUSP00000133992 TRANSLATION protein_coding - CCDS36027.1 1 930.0 0.0 13.33 11.4 86.6 0.0 -4,-5 1.0 17 9.0 PRINCIPAL:4 ENSMUSG00000069539 Scyl2 ENSMUST00000174492 ENSMUSP00000134366 TRANSLATION protein_coding start - 1 274.0 0.0 6.33 0.0 0.0 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000069539 Scyl2 ENSMUST00000105294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050251 Or6c76 ENSMUST00000059891 ENSMUSP00000054949 TRANSLATION protein_coding - - - 313.0 0.0 2.0 12.5 166.4 8.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050251 Or6c76 ENSMUST00000218237 ENSMUSP00000151711 TRANSLATION protein_coding - CCDS24336.1 - 328.0 0.0 2.0 0.0 166.4 8.0 -4,-6 0.3391 - 12.0 MINOR ENSMUSG00000050251 Or6c76 ENSMUST00000203598 ENSMUSP00000145037 TRANSLATION protein_coding stop - 3 148.0 0.0 1.0 0.0 71.6 5.0 -4,-5 0.0043 - -2.0 MINOR ENSMUSG00000035206 Sppl2b ENSMUST00000219614 ENSMUSP00000151531 TRANSLATION protein_coding start/stop - 5 259.0 0.0 1.36 0.0 129.0 12.0 -4,-7 0.0065 1 -2.0 MINOR ENSMUSG00000035206 Sppl2b ENSMUST00000218007 - NO_TRANSLATION retained_intron ENSMUSG00000035206 Sppl2b ENSMUST00000035597 ENSMUSP00000036289 TRANSLATION protein_coding - CCDS35988.1 1 578.0 0.0 2.88 0.0 323.7 18.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000035206 Sppl2b ENSMUST00000218789 ENSMUSP00000152014 TRANSLATION protein_coding start - 1 374.0 0.0 2.78 0.0 286.6 18.0 -4,-2 0.0394 - -2.0 MINOR ENSMUSG00000035206 Sppl2b ENSMUST00000218812 - NO_TRANSLATION retained_intron ENSMUSG00000035206 Sppl2b ENSMUST00000219136 - NO_TRANSLATION retained_intron ENSMUSG00000035206 Sppl2b ENSMUST00000219366 - NO_TRANSLATION retained_intron ENSMUSG00000035206 Sppl2b ENSMUST00000218727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035206 Sppl2b ENSMUST00000217714 - NO_TRANSLATION retained_intron ENSMUSG00000035206 Sppl2b ENSMUST00000220091 ENSMUSP00000151737 TRANSLATION protein_coding - - 1 266.0 0.0 0.44 0.0 141.9 15.0 -4,-7 0.0055 - 0.918 MINOR ENSMUSG00000035206 Sppl2b ENSMUST00000219951 ENSMUSP00000151420 TRANSLATION protein_coding start/stop - 3 239.0 0.0 2.2925 0.0 237.0 10.0 -4,-7 0.0066 - -2.0 MINOR ENSMUSG00000040033 Stat2 ENSMUST00000218863 - NO_TRANSLATION retained_intron ENSMUSG00000040033 Stat2 ENSMUST00000085708 ENSMUSP00000082855 TRANSLATION protein_coding - CCDS24269.1 1 922.0 0.0 15.0755 0.0 594.1 0.0 -4,-7 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000040033 Stat2 ENSMUST00000220142 - NO_TRANSLATION retained_intron ENSMUSG00000040033 Stat2 ENSMUST00000217727 - NO_TRANSLATION retained_intron ENSMUSG00000040033 Stat2 ENSMUST00000217852 - NO_TRANSLATION retained_intron ENSMUSG00000040033 Stat2 ENSMUST00000218862 - NO_TRANSLATION retained_intron ENSMUSG00000040033 Stat2 ENSMUST00000220277 - NO_TRANSLATION retained_intron ENSMUSG00000020171 Yeats4 ENSMUST00000020382 ENSMUSP00000020382 TRANSLATION protein_coding - CCDS24191.1 1 227.0 0.0 6.13 34.9 116.9 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020171 Yeats4 ENSMUST00000218887 ENSMUSP00000151659 TRANSLATION nonsense_mediated_decay - - 1 95.0 0.0 2.05 0.0 47.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020171 Yeats4 ENSMUST00000219609 - NO_TRANSLATION retained_intron ENSMUSG00000019998 Stx7 ENSMUST00000219553 ENSMUSP00000151686 TRANSLATION protein_coding stop - 1 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000019998 Stx7 ENSMUST00000218050 - NO_TRANSLATION retained_intron ENSMUSG00000019998 Stx7 ENSMUST00000220041 ENSMUSP00000151638 TRANSLATION protein_coding - CCDS23749.1 1 261.0 0.0 4.83 22.3 162.0 1.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000019998 Stx7 ENSMUST00000020174 ENSMUSP00000020174 TRANSLATION protein_coding - CCDS23749.1 1 261.0 0.0 4.83 22.3 162.0 1.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000019998 Stx7 ENSMUST00000218643 - NO_TRANSLATION retained_intron ENSMUSG00000019897 Ccdc59 ENSMUST00000020049 ENSMUSP00000020049 TRANSLATION protein_coding - CCDS24158.1 1 240.0 0.0 0.0 9.2 35.2 0.0 -4,-7 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000019897 Ccdc59 ENSMUST00000155406 - NO_TRANSLATION retained_intron ENSMUSG00000019897 Ccdc59 ENSMUST00000133538 - NO_TRANSLATION retained_intron ENSMUSG00000053329 Gatd3a ENSMUST00000219120 ENSMUSP00000151605 TRANSLATION protein_coding stop - 2 195.0 0.0 3.75 0.0 0.0 0.0 -2,0 0.0157 7 -2.0 MINOR ENSMUSG00000053329 Gatd3a ENSMUST00000218286 - NO_TRANSLATION retained_intron ENSMUSG00000053329 Gatd3a ENSMUST00000001242 ENSMUSP00000001242 TRANSLATION protein_coding - CCDS35957.1 1 266.0 0.0 5.75 5.7 0.0 0.0 -2,0 1.0 12 8.0 PRINCIPAL:1 ENSMUSG00000053329 Gatd3a ENSMUST00000219504 - NO_TRANSLATION retained_intron ENSMUSG00000053329 Gatd3a ENSMUST00000220359 ENSMUSP00000151954 TRANSLATION protein_coding start - 2 116.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0012 6 -2.0 MINOR ENSMUSG00000039981 Zc3h12d ENSMUST00000039484 ENSMUSP00000040217 TRANSLATION protein_coding - CCDS48496.1 1 533.0 4.0 3.4 0.4 219.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000019794 Katna1 ENSMUST00000173400 ENSMUSP00000133588 TRANSLATION nonsense_mediated_decay - - 5 130.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019794 Katna1 ENSMUST00000019929 ENSMUSP00000019929 TRANSLATION protein_coding - - 1 491.0 13.0 9.13 21.0 168.1 0.0 -4,-5 0.8871 4 18.0 ALTERNATIVE:1 ENSMUSG00000019794 Katna1 ENSMUST00000173511 ENSMUSP00000134254 TRANSLATION protein_coding start - 5 54.0 3.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019794 Katna1 ENSMUST00000174007 ENSMUSP00000133321 TRANSLATION protein_coding start - 5 66.0 0.0 1.3 0.0 35.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019794 Katna1 ENSMUST00000172400 - NO_TRANSLATION retained_intron ENSMUSG00000019794 Katna1 ENSMUST00000165806 ENSMUSP00000132514 TRANSLATION protein_coding - CCDS23689.2 1 493.0 13.0 9.13 21.0 168.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:4 ENSMUSG00000040675 Mthfd1l ENSMUST00000043735 ENSMUSP00000036178 TRANSLATION protein_coding - CCDS56672.1 1 977.0 2.0 19.465 4.4 1017.5 0.0 -4,0 1.0 32 16.0 PRINCIPAL:1 ENSMUSG00000040675 Mthfd1l ENSMUST00000117291 ENSMUSP00000112870 TRANSLATION protein_coding - CCDS56672.1 1 977.0 2.0 19.465 4.4 1017.5 0.0 -4,0 1.0 32 16.0 PRINCIPAL:1 ENSMUSG00000040675 Mthfd1l ENSMUST00000120585 ENSMUSP00000112897 TRANSLATION protein_coding - CCDS56672.1 1 977.0 2.0 19.465 4.4 1017.5 0.0 -4,0 1.0 32 16.0 PRINCIPAL:1 ENSMUSG00000040675 Mthfd1l ENSMUST00000154517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019888 Mgat4c ENSMUST00000120748 ENSMUSP00000114010 TRANSLATION protein_coding - CCDS24153.1 1 478.0 0.0 3.25 9.6 313.6 1.0 -4,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000019888 Mgat4c ENSMUST00000146230 - NO_TRANSLATION retained_intron ENSMUSG00000019888 Mgat4c ENSMUST00000218554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019888 Mgat4c ENSMUST00000138522 ENSMUSP00000118056 TRANSLATION protein_coding stop - 3 150.0 0.0 2.25 0.0 59.7 1.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000019888 Mgat4c ENSMUST00000218984 - NO_TRANSLATION retained_intron ENSMUSG00000019888 Mgat4c ENSMUST00000219683 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019888 Mgat4c ENSMUST00000138016 ENSMUSP00000116902 TRANSLATION protein_coding stop - 3 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019888 Mgat4c ENSMUST00000134930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019888 Mgat4c ENSMUST00000219195 ENSMUSP00000151859 TRANSLATION protein_coding stop - 5 113.0 0.0 1.25 0.0 0.0 1.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000019888 Mgat4c ENSMUST00000163753 ENSMUSP00000131551 TRANSLATION protein_coding - CCDS24153.1 3 478.0 0.0 3.25 9.6 313.6 1.0 -4,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000019888 Mgat4c ENSMUST00000127504 ENSMUSP00000117148 TRANSLATION protein_coding stop - 5 59.0 0.0 0.0 0.0 0.0 1.0 -4,-2 0.0007 - -2.0 MINOR ENSMUSG00000019888 Mgat4c ENSMUST00000130580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019888 Mgat4c ENSMUST00000143640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019888 Mgat4c ENSMUST00000156751 ENSMUSP00000116216 TRANSLATION protein_coding stop - 3 76.0 0.0 0.0 0.0 0.0 1.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000019888 Mgat4c ENSMUST00000020039 ENSMUSP00000020039 TRANSLATION protein_coding - CCDS24153.1 1 478.0 0.0 3.25 9.6 313.6 1.0 -4,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000047514 Tspyl1 ENSMUST00000061372 ENSMUSP00000063051 TRANSLATION protein_coding - CCDS23777.1 - 379.0 0.0 0.6 0.1 69.3 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000096747 Or9r3 ENSMUST00000213145 ENSMUSP00000150794 TRANSLATION protein_coding - CCDS24348.1 5 315.0 0.0 1.0 8.1 183.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096747 Or9r3 ENSMUST00000081469 ENSMUSP00000080189 TRANSLATION protein_coding - CCDS24348.1 - 315.0 0.0 1.0 8.1 183.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020231 Dip2a ENSMUST00000159486 - NO_TRANSLATION retained_intron ENSMUSG00000020231 Dip2a ENSMUST00000160442 ENSMUSP00000125744 TRANSLATION nonsense_mediated_decay start - 3 157.0 0.0 0.26 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020231 Dip2a ENSMUST00000160048 ENSMUSP00000125184 TRANSLATION protein_coding - - 5 1523.0 0.0 8.724 1.1 372.5 0.0 -4,-6 0.1711 29 8.73 MINOR ENSMUSG00000020231 Dip2a ENSMUST00000159807 - NO_TRANSLATION retained_intron ENSMUSG00000020231 Dip2a ENSMUST00000105417 ENSMUSP00000101057 TRANSLATION protein_coding - - 5 1572.0 0.0 8.856 0.1 423.3 0.0 -4,-6 0.3291 29 12.0 MINOR ENSMUSG00000020231 Dip2a ENSMUST00000162766 - NO_TRANSLATION retained_intron ENSMUSG00000020231 Dip2a ENSMUST00000162524 ENSMUSP00000125614 TRANSLATION nonsense_mediated_decay start - 5 87.0 0.0 0.165 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020231 Dip2a ENSMUST00000036033 ENSMUSP00000043710 TRANSLATION protein_coding - CCDS35944.2 5 1562.0 0.0 8.724 8.1 423.3 0.0 -4,-6 1.0 29 14.736 PRINCIPAL:1 ENSMUSG00000001785 Pwp1 ENSMUST00000219626 - NO_TRANSLATION retained_intron ENSMUSG00000001785 Pwp1 ENSMUST00000001836 ENSMUSP00000001836 TRANSLATION protein_coding - CCDS24092.1 1 501.0 0.0 4.315 10.3 44.5 0.0 -3,-1 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000001785 Pwp1 ENSMUST00000217667 ENSMUSP00000152025 TRANSLATION protein_coding stop - 3 126.0 0.0 0.2 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000001785 Pwp1 ENSMUST00000219256 ENSMUSP00000151813 TRANSLATION nonsense_mediated_decay - - 5 94.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0 2 -2.0 MINOR ENSMUSG00000001785 Pwp1 ENSMUST00000219902 - NO_TRANSLATION retained_intron ENSMUSG00000112241 Gm49325 ENSMUST00000174113 ENSMUSP00000134357 TRANSLATION nonsense_mediated_decay,RT - - 2 75.0 0.0 2.08 0.0 67.9 0.0 -4,-5 0.7414 - -2.0 PRINCIPAL:1 ENSMUSG00000020250 Txnrd1 ENSMUST00000219442 ENSMUSP00000152046 TRANSLATION protein_coding - CCDS24072.1 5 499.0 53.0 13.0 14.4 184.5 0.0 -4,-5 1.0 17 21.502 PRINCIPAL:1 ENSMUSG00000020250 Txnrd1 ENSMUST00000218082 - NO_TRANSLATION retained_intron ENSMUSG00000020250 Txnrd1 ENSMUST00000219368 ENSMUSP00000151629 TRANSLATION protein_coding - - 1 613.0 53.0 13.25 1.7 184.5 0.0 -4,-6 0.2708 17 18.208 MINOR ENSMUSG00000020250 Txnrd1 ENSMUST00000218694 ENSMUSP00000151409 TRANSLATION protein_coding stop - 3 164.0 21.0 3.75 0.0 36.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000020250 Txnrd1 ENSMUST00000218724 - NO_TRANSLATION retained_intron ENSMUSG00000020250 Txnrd1 ENSMUST00000219962 ENSMUSP00000151825 TRANSLATION protein_coding - CCDS24072.1 1 499.0 53.0 13.0 14.4 184.5 0.0 -4,-5 1.0 17 21.502 PRINCIPAL:1 ENSMUSG00000020250 Txnrd1 ENSMUST00000020484 ENSMUSP00000020484 TRANSLATION protein_coding - CCDS24072.1 1 499.0 53.0 13.0 14.4 184.5 0.0 -4,-5 1.0 17 21.502 PRINCIPAL:1 ENSMUSG00000020250 Txnrd1 ENSMUST00000219911 - NO_TRANSLATION retained_intron ENSMUSG00000020057 Dram1 ENSMUST00000020249 ENSMUSP00000020249 TRANSLATION protein_coding - CCDS24109.1 1 238.0 0.0 6.33 17.4 169.9 6.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020057 Dram1 ENSMUST00000156097 ENSMUSP00000123685 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 1.0 0.0 0.0 1.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000020057 Dram1 ENSMUST00000138159 ENSMUSP00000116312 TRANSLATION protein_coding stop - 3 41.0 0.0 1.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034781 Gna11 ENSMUST00000146984 - NO_TRANSLATION retained_intron ENSMUSG00000034781 Gna11 ENSMUST00000134354 - NO_TRANSLATION retained_intron ENSMUSG00000034781 Gna11 ENSMUST00000043604 ENSMUSP00000043190 TRANSLATION protein_coding - CCDS24061.1 1 359.0 23.0 7.0 32.3 387.0 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000038151 Prdm1 ENSMUST00000167340 - NO_TRANSLATION retained_intron ENSMUSG00000038151 Prdm1 ENSMUST00000218369 ENSMUSP00000151237 TRANSLATION protein_coding - - 5 838.0 19.0 3.73 2.0 98.2 0.0 -4,-2 0.3907 1 18.342 MINOR ENSMUSG00000038151 Prdm1 ENSMUST00000105490 ENSMUSP00000101129 TRANSLATION protein_coding - CCDS23825.2 1 823.0 19.0 3.73 9.8 98.2 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000038151 Prdm1 ENSMUST00000039174 ENSMUSP00000039248 TRANSLATION protein_coding - - 2 856.0 19.0 3.73 0.3 98.2 0.0 -3,-1 0.2218 1 18.0 MINOR ENSMUSG00000020097 Sgpl1 ENSMUST00000152316 - NO_TRANSLATION retained_intron ENSMUSG00000020097 Sgpl1 ENSMUST00000150258 ENSMUSP00000117848 TRANSLATION nonsense_mediated_decay - - 1 487.0 12.0 11.21 0.0 66.2 4.0 -4,-6 0.0276 15 -2.0 MINOR ENSMUSG00000020097 Sgpl1 ENSMUST00000092498 ENSMUSP00000090155 TRANSLATION protein_coding - CCDS35914.1 1 568.0 12.0 13.21 11.0 66.2 4.0 -4,-6 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000020097 Sgpl1 ENSMUST00000143225 - NO_TRANSLATION retained_intron ENSMUSG00000020097 Sgpl1 ENSMUST00000122259 ENSMUSP00000112975 TRANSLATION protein_coding - CCDS35914.1 1 568.0 12.0 13.21 11.0 66.2 4.0 -4,-6 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000020097 Sgpl1 ENSMUST00000137833 ENSMUSP00000119550 TRANSLATION protein_coding stop - 3 104.0 0.0 2.13 0.0 0.0 4.0 -4,-6 0.003 1 -2.0 MINOR ENSMUSG00000020097 Sgpl1 ENSMUST00000155919 ENSMUSP00000115561 TRANSLATION protein_coding stop - 2 199.0 0.0 4.88 0.0 0.0 4.0 -4,-6 0.0038 5 -2.0 MINOR ENSMUSG00000020097 Sgpl1 ENSMUST00000126307 ENSMUSP00000115907 TRANSLATION protein_coding stop - 2 58.0 0.0 0.8 0.0 0.0 3.0 -4,-5 0.0002 1 -2.0 MINOR ENSMUSG00000020097 Sgpl1 ENSMUST00000124896 - NO_TRANSLATION retained_intron ENSMUSG00000020097 Sgpl1 ENSMUST00000142192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000112814 Cdc5lrt5 ENSMUST00000177762 ENSMUSP00000151606 TRANSLATION protein_coding - - - 802.0 0.0 0.6 30.9 348.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000099009 Rdh16f1 ENSMUST00000128247 ENSMUSP00000116574 TRANSLATION protein_coding,RT - - 1 317.0 27.0 4.0 17.2 136.7 0.0 1,-3 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000033307 Mif ENSMUST00000218267 - NO_TRANSLATION retained_intron ENSMUSG00000033307 Mif ENSMUST00000038169 ENSMUSP00000041149 TRANSLATION protein_coding - CCDS23934.1 1 115.0 0.0 2.75 32.6 175.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000009115 Spatc1l ENSMUST00000009259 ENSMUSP00000009259 TRANSLATION protein_coding - CCDS23949.1 1 342.0 0.0 0.0 9.1 366.2 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000009115 Spatc1l ENSMUST00000105414 ENSMUSP00000101054 TRANSLATION protein_coding - - 1 195.0 0.0 0.0 0.0 159.2 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000019880 Rspo3 ENSMUST00000092623 ENSMUSP00000090287 TRANSLATION protein_coding - CCDS23761.1 1 277.0 0.0 3.0 16.5 180.4 0.0 -1,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000019880 Rspo3 ENSMUST00000215256 ENSMUSP00000149363 TRANSLATION protein_coding start - 3 186.0 0.0 2.0 0.0 87.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019960 Dusp6 ENSMUST00000020118 ENSMUSP00000020118 TRANSLATION protein_coding - CCDS24147.1 1 381.0 9.0 3.0 34.9 198.0 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000019960 Dusp6 ENSMUST00000220218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019960 Dusp6 ENSMUST00000219988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019960 Dusp6 ENSMUST00000220291 ENSMUSP00000151438 TRANSLATION protein_coding - - 5 235.0 8.0 2.0 4.4 131.0 0.0 -4,-5 0.0328 2 11.716 MINOR ENSMUSG00000058071 Or6c219 ENSMUST00000215527 ENSMUSP00000149259 TRANSLATION protein_coding - CCDS24344.1 5 318.0 0.0 3.0 5.6 160.9 5.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058071 Or6c219 ENSMUST00000205227 ENSMUSP00000145108 TRANSLATION protein_coding stop - 3 123.0 0.0 1.0 0.0 84.6 3.0 -4,-7 0.0023 - -2.0 MINOR ENSMUSG00000058071 Or6c219 ENSMUST00000074308 ENSMUSP00000073918 TRANSLATION protein_coding - CCDS24344.1 - 318.0 0.0 3.0 5.6 160.9 5.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000062593 Gm49339 ENSMUST00000217706 ENSMUSP00000151978 TRANSLATION protein_coding,RT - - 1 296.0 0.0 2.45 0.1 64.1 0.0 4,-1 0.1908 - -2.0 ALTERNATIVE:2 ENSMUSG00000062593 Gm49339 ENSMUST00000218123 ENSMUSP00000151827 TRANSLATION nonsense_mediated_decay,RT - - 5 296.0 0.0 2.45 0.0 64.1 2.0 4,-1 0.2311 - -2.0 ALTERNATIVE:2 ENSMUSG00000062593 Gm49339 ENSMUST00000219696 ENSMUSP00000151486 TRANSLATION protein_coding,RT - - 1 335.0 0.0 2.45 0.1 64.1 2.0 4,-1 0.8407 - -2.0 PRINCIPAL:5 ENSMUSG00000020000 Moxd1 ENSMUST00000095784 ENSMUSP00000093460 TRANSLATION protein_coding - CCDS23750.1 1 613.0 5.0 6.55 1.9 424.0 0.0 3,-2 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000020000 Moxd1 ENSMUST00000154916 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059862 Or9k2b ENSMUST00000078322 ENSMUSP00000077436 TRANSLATION protein_coding - CCDS24351.1 - 313.0 0.0 1.0 12.5 176.6 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059862 Or9k2b ENSMUST00000216661 ENSMUSP00000149119 TRANSLATION protein_coding - CCDS24351.1 3 313.0 0.0 1.0 12.5 176.6 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059862 Or9k2b ENSMUST00000203720 ENSMUSP00000144755 TRANSLATION protein_coding - CCDS24351.1 5 313.0 0.0 1.0 12.5 176.6 5.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036764 Dnajc12 ENSMUST00000043317 ENSMUSP00000041298 TRANSLATION protein_coding - CCDS23899.1 1 198.0 0.0 2.95 11.8 63.8 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000036764 Dnajc12 ENSMUST00000129625 ENSMUSP00000120892 TRANSLATION protein_coding stop - 3 116.0 0.0 0.7 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036764 Dnajc12 ENSMUST00000136832 - NO_TRANSLATION retained_intron ENSMUSG00000094080 Or7a42 ENSMUST00000081571 ENSMUSP00000080282 TRANSLATION protein_coding - CCDS23971.1 - 310.0 0.0 1.0 7.6 158.2 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094080 Or7a42 ENSMUST00000214952 ENSMUSP00000148856 TRANSLATION protein_coding - CCDS23971.1 5 310.0 0.0 1.0 7.6 158.2 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094080 Or7a42 ENSMUST00000216819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094080 Or7a42 ENSMUST00000203851 ENSMUSP00000144916 TRANSLATION protein_coding - CCDS23971.1 3 310.0 0.0 1.0 7.6 158.2 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000112252 Cdc5lrt4 ENSMUST00000219565 ENSMUSP00000151607 TRANSLATION protein_coding - - - 802.0 0.0 0.6 30.9 346.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040287 Stac3 ENSMUST00000162302 - NO_TRANSLATION retained_intron ENSMUSG00000040287 Stac3 ENSMUST00000160760 - NO_TRANSLATION retained_intron ENSMUSG00000040287 Stac3 ENSMUST00000035839 ENSMUSP00000048148 TRANSLATION protein_coding - CCDS24242.1 1 360.0 8.0 4.85 11.0 118.8 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000040287 Stac3 ENSMUST00000160610 ENSMUSP00000124638 TRANSLATION protein_coding stop - 2 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040287 Stac3 ENSMUST00000160019 ENSMUSP00000125124 TRANSLATION protein_coding - CCDS24242.1 1 360.0 8.0 4.85 11.0 118.8 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000071369 Map3k5 ENSMUST00000120259 ENSMUSP00000112864 TRANSLATION protein_coding - - 1 1372.0 18.0 14.67 0.1 744.4 0.0 -4,-5 0.4308 17 14.0 ALTERNATIVE:2 ENSMUSG00000071369 Map3k5 ENSMUST00000152533 ENSMUSP00000122553 TRANSLATION protein_coding stop - 3 79.0 0.0 0.0 0.0 70.7 0.0 -4,-6 0.0001 1 -2.0 MINOR ENSMUSG00000071369 Map3k5 ENSMUST00000129437 ENSMUSP00000114518 TRANSLATION protein_coding stop - 5 144.0 14.0 3.705 0.0 67.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000071369 Map3k5 ENSMUST00000156369 - NO_TRANSLATION retained_intron ENSMUSG00000071369 Map3k5 ENSMUST00000095806 ENSMUSP00000093485 TRANSLATION protein_coding - CCDS35857.1 1 1380.0 18.0 14.67 3.5 740.5 0.0 -4,-5 1.0 17 14.6 PRINCIPAL:2 ENSMUSG00000071369 Map3k5 ENSMUST00000138994 ENSMUSP00000150155 TRANSLATION non_stop_decay start/stop - 3 171.0 10.0 3.5 0.0 104.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000095696 Or6c1b ENSMUST00000076508 ENSMUSP00000075827 TRANSLATION protein_coding - CCDS24317.1 - 312.0 0.0 1.0 12.5 180.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095696 Or6c1b ENSMUST00000204529 ENSMUSP00000145099 TRANSLATION protein_coding - CCDS24317.1 3 312.0 0.0 1.0 12.5 180.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003070 Efna2 ENSMUST00000003154 ENSMUSP00000003154 TRANSLATION protein_coding - CCDS24013.1 1 209.0 0.0 2.35 4.6 123.3 0.0 4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096000 Or6c204 ENSMUST00000072976 ENSMUSP00000072743 TRANSLATION protein_coding - CCDS24310.1 - 311.0 0.0 1.0 11.5 162.1 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000064181 Rab3ip ENSMUST00000218391 ENSMUSP00000151778 TRANSLATION protein_coding stop - 2 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0123 - -2.0 MINOR ENSMUSG00000064181 Rab3ip ENSMUST00000219603 ENSMUSP00000151326 TRANSLATION protein_coding stop - 3 149.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0129 1 -2.0 MINOR ENSMUSG00000064181 Rab3ip ENSMUST00000219570 - NO_TRANSLATION retained_intron ENSMUSG00000064181 Rab3ip ENSMUST00000020375 ENSMUSP00000020375 TRANSLATION protein_coding - CCDS24186.1 1 428.0 0.0 6.0 4.8 0.0 0.0 -4,-5 0.3526 8 5.074 MINOR ENSMUSG00000064181 Rab3ip ENSMUST00000219109 ENSMUSP00000151708 TRANSLATION protein_coding - - 1 460.0 0.0 7.0 15.2 0.0 0.0 -4,-5 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000063953 Amd2 ENSMUST00000080898 ENSMUSP00000079703 TRANSLATION protein_coding - CCDS48536.1 - 334.0 5.0 1.0 14.8 415.9 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000039879 Heca ENSMUST00000037879 ENSMUSP00000040707 TRANSLATION protein_coding - CCDS23709.1 1 544.0 7.0 0.0 8.9 408.7 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000039879 Heca ENSMUST00000217949 ENSMUSP00000151692 TRANSLATION protein_coding start - 1 133.0 4.0 0.0 0.0 187.5 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000039879 Heca ENSMUST00000218268 - NO_TRANSLATION retained_intron ENSMUSG00000039879 Heca ENSMUST00000218758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006764 Tph2 ENSMUST00000155794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006764 Tph2 ENSMUST00000006949 ENSMUSP00000006949 TRANSLATION protein_coding - CCDS36061.1 1 488.0 14.0 8.65 20.8 577.9 0.0 -4,-2 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000019900 Rfx6 ENSMUST00000050455 ENSMUSP00000057384 TRANSLATION protein_coding - CCDS23835.1 1 663.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.035 - 0.0 MINOR ENSMUSG00000019900 Rfx6 ENSMUST00000219364 ENSMUSP00000151430 TRANSLATION protein_coding - - 1 893.0 0.0 2.125 0.0 106.5 0.0 -4,-5 0.0875 - 12.0 MINOR ENSMUSG00000019900 Rfx6 ENSMUST00000219771 ENSMUSP00000151599 TRANSLATION nonsense_mediated_decay start - 5 270.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0011 - -2.0 MINOR ENSMUSG00000019900 Rfx6 ENSMUST00000122922 ENSMUSP00000116057 TRANSLATION protein_coding - CCDS48558.1 5 927.0 0.0 2.125 9.1 106.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019900 Rfx6 ENSMUST00000217662 - NO_TRANSLATION retained_intron ENSMUSG00000050198 Or6c38 ENSMUST00000216212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050198 Or6c38 ENSMUST00000063031 ENSMUSP00000089619 TRANSLATION protein_coding - CCDS24305.1 - 312.0 0.0 1.0 12.5 168.7 0.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050198 Or6c38 ENSMUST00000216681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000113262 Gm48551 ENSMUST00000131968 ENSMUSP00000115416 TRANSLATION protein_coding,RT start/stop - 3 224.0 0.0 2.9 0.0 39.1 0.0 -4,-5 0.0017 - -2.0 PRINCIPAL:5 ENSMUSG00000113262 Gm48551 ENSMUST00000144647 ENSMUSP00000116074 TRANSLATION nonsense_mediated_decay,RT - - 2 200.0 0.0 3.5 0.0 61.7 0.0 -4,-5 0.7388 - -2.0 ALTERNATIVE:2 ENSMUSG00000037455 Slc18b1 ENSMUST00000143931 - NO_TRANSLATION retained_intron ENSMUSG00000037455 Slc18b1 ENSMUST00000133289 ENSMUSP00000121289 TRANSLATION protein_coding stop - 1 142.0 0.0 3.08 0.0 33.0 4.0 0,-3 0.0048 - -2.0 MINOR ENSMUSG00000037455 Slc18b1 ENSMUST00000127841 ENSMUSP00000123468 TRANSLATION nonsense_mediated_decay start - 1 42.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000037455 Slc18b1 ENSMUST00000134170 ENSMUSP00000116940 TRANSLATION nonsense_mediated_decay - - 3 130.0 0.0 3.0 0.0 33.0 3.0 -4,-5 0.0016 - -2.0 MINOR ENSMUSG00000037455 Slc18b1 ENSMUST00000119597 ENSMUSP00000112634 TRANSLATION protein_coding - CCDS48521.1 5 457.0 0.0 12.98 4.7 166.0 12.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000112781 Cdc5lrt8 ENSMUST00000218329 ENSMUSP00000151963 TRANSLATION protein_coding - - - 802.0 0.0 0.6 30.9 342.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000118528 Gm56675 ENSMUST00000238910 ENSMUSP00000159048 TRANSLATION protein_coding - - - 42.0 0.0 0.0 0.0 0.0 0.0 -2,-6 0.5653 - 0.0 PRINCIPAL:1 ENSMUSG00000096744 Gm4307 ENSMUST00000177945 ENSMUSP00000135905 TRANSLATION protein_coding - - - 286.0 0.0 0.8 0.0 69.7 0.0 -4,-5 0.7789 - 12.0 PRINCIPAL:1 ENSMUSG00000025348 Itga7 ENSMUST00000219427 ENSMUSP00000151760 TRANSLATION protein_coding start - 1 128.0 0.0 0.375 0.0 0.0 2.0 -4,-7 0.0005 2 -2.0 MINOR ENSMUSG00000025348 Itga7 ENSMUST00000099112 ENSMUSP00000096712 TRANSLATION protein_coding - CCDS24300.1 2 1136.0 22.0 8.21075 4.9 489.4 2.0 -2,-4 1.0 23 19.802 PRINCIPAL:1 ENSMUSG00000025348 Itga7 ENSMUST00000218290 ENSMUSP00000151960 TRANSLATION protein_coding - - 1 1140.0 22.0 7.91075 3.1 489.4 2.0 -2,-4 0.6992 24 18.278 MINOR ENSMUSG00000025348 Itga7 ENSMUST00000219897 - NO_TRANSLATION retained_intron ENSMUSG00000025348 Itga7 ENSMUST00000240553 ENSMUSP00000159495 TRANSLATION protein_coding - - - 1180.0 22.0 8.31075 0.3 489.4 2.0 -2,-4 0.3075 23 18.0 MINOR ENSMUSG00000025348 Itga7 ENSMUST00000218387 - NO_TRANSLATION retained_intron ENSMUSG00000059554 Ccdc28a ENSMUST00000174631 - NO_TRANSLATION retained_intron ENSMUSG00000059554 Ccdc28a ENSMUST00000173243 ENSMUSP00000133585 TRANSLATION protein_coding - - 5 130.0 0.0 2.86 0.0 106.9 0.0 -4,-5 0.0016 3 11.46 MINOR ENSMUSG00000059554 Ccdc28a ENSMUST00000174592 ENSMUSP00000134307 TRANSLATION protein_coding - - 5 137.0 0.0 2.86 0.0 106.9 0.0 -4,-5 0.0016 3 11.46 MINOR ENSMUSG00000059554 Ccdc28a ENSMUST00000052648 ENSMUSP00000050107 TRANSLATION protein_coding - - 1 192.0 0.0 3.13 0.4 92.9 0.0 -4,-7 0.0691 2 11.16 MINOR ENSMUSG00000059554 Ccdc28a ENSMUST00000080860 ENSMUSP00000079671 TRANSLATION protein_coding - CCDS35852.1 1 184.0 0.0 2.86 13.2 106.9 0.0 -4,-7 1.0 3 15.46 PRINCIPAL:1 ENSMUSG00000059554 Ccdc28a ENSMUST00000173962 ENSMUSP00000133848 TRANSLATION protein_coding start - 5 68.0 0.0 1.33 0.0 37.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003346 Abhd17a ENSMUST00000003436 ENSMUSP00000003436 TRANSLATION protein_coding - CCDS24027.1 1 310.0 3.0 4.6 23.0 33.1 0.0 -4,-7 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000003346 Abhd17a ENSMUST00000191440 ENSMUSP00000139766 TRANSLATION protein_coding - - 1 236.0 1.0 3.6 0.0 33.1 0.0 -4,-7 0.0051 3 11.001 MINOR ENSMUSG00000003346 Abhd17a ENSMUST00000187646 ENSMUSP00000140424 TRANSLATION protein_coding stop - 5 56.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000003346 Abhd17a ENSMUST00000189605 ENSMUSP00000141177 TRANSLATION protein_coding start - 3 176.0 2.0 3.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034620 Rxylt1 ENSMUST00000135083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034620 Rxylt1 ENSMUST00000038772 ENSMUSP00000045258 TRANSLATION nonsense_mediated_decay - - 1 85.0 0.0 0.0 0.0 0.0 0.0 2,-5 0.0509 - -2.0 MINOR ENSMUSG00000034620 Rxylt1 ENSMUST00000140299 ENSMUSP00000119308 TRANSLATION protein_coding - CCDS24214.1 1 444.0 0.0 0.0 9.2 0.0 0.0 2,-5 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000034620 Rxylt1 ENSMUST00000141057 - NO_TRANSLATION retained_intron ENSMUSG00000034620 Rxylt1 ENSMUST00000125506 - NO_TRANSLATION retained_intron ENSMUSG00000034620 Rxylt1 ENSMUST00000129359 - NO_TRANSLATION retained_intron ENSMUSG00000038916 Soga3 ENSMUST00000214863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038916 Soga3 ENSMUST00000213243 ENSMUSP00000150922 TRANSLATION protein_coding start/stop - 5 199.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000038916 Soga3 ENSMUST00000092629 ENSMUSP00000090293 TRANSLATION protein_coding - CCDS35875.1 5 945.0 0.0 0.0 2.4 213.7 0.0 -2,-5 1.0 27 7.0 PRINCIPAL:1 ENSMUSG00000038916 Soga3 ENSMUST00000216757 ENSMUSP00000149304 TRANSLATION protein_coding stop - 3 77.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000038916 Soga3 ENSMUST00000213451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063760 Rnf217 ENSMUST00000081989 ENSMUSP00000080650 TRANSLATION protein_coding - CCDS48531.1 5 515.0 22.0 1.18 0.3 67.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039994 Timeless ENSMUST00000105244 ENSMUSP00000100878 TRANSLATION protein_coding - CCDS48724.1 1 1196.0 0.0 11.18 0.1 880.3 0.0 -4,-7 0.9246 13 8.0 ALTERNATIVE:2 ENSMUSG00000039994 Timeless ENSMUST00000105242 ENSMUSP00000100876 TRANSLATION protein_coding - CCDS48725.1 1 1196.0 0.0 11.18 0.1 882.6 0.0 -4,-7 1.0 13 8.0 PRINCIPAL:4 ENSMUSG00000039994 Timeless ENSMUST00000055539 ENSMUSP00000058021 TRANSLATION protein_coding - CCDS24266.1 1 1197.0 0.0 11.18 0.1 880.4 0.0 -4,-7 0.9287 13 8.0 ALTERNATIVE:2 ENSMUSG00000039994 Timeless ENSMUST00000105240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039994 Timeless ENSMUST00000135538 - NO_TRANSLATION retained_intron ENSMUSG00000039994 Timeless ENSMUST00000105245 ENSMUSP00000100879 TRANSLATION protein_coding - CCDS24266.1 1 1197.0 0.0 11.18 0.1 880.4 0.0 -4,-7 0.9287 13 8.0 ALTERNATIVE:2 ENSMUSG00000039994 Timeless ENSMUST00000125289 ENSMUSP00000132079 TRANSLATION protein_coding stop - 3 122.0 0.0 2.28 0.0 114.3 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000039994 Timeless ENSMUST00000135376 - NO_TRANSLATION retained_intron ENSMUSG00000039994 Timeless ENSMUST00000129147 - NO_TRANSLATION retained_intron ENSMUSG00000039994 Timeless ENSMUST00000145710 - NO_TRANSLATION retained_intron ENSMUSG00000039994 Timeless ENSMUST00000142484 - NO_TRANSLATION retained_intron ENSMUSG00000039994 Timeless ENSMUST00000146945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039994 Timeless ENSMUST00000105243 ENSMUSP00000100877 TRANSLATION protein_coding stop - 5 534.0 0.0 5.43 0.0 268.5 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000039994 Timeless ENSMUST00000142149 - NO_TRANSLATION retained_intron ENSMUSG00000039994 Timeless ENSMUST00000136854 - NO_TRANSLATION retained_intron ENSMUSG00000109864 Eid3 ENSMUST00000211623 ENSMUSP00000147261 TRANSLATION protein_coding - CCDS83739.1 - 375.0 0.0 0.0 1.1 150.1 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000019842 Traf3ip2 ENSMUST00000156016 - NO_TRANSLATION retained_intron ENSMUSG00000019842 Traf3ip2 ENSMUST00000129693 - NO_TRANSLATION retained_intron ENSMUSG00000019842 Traf3ip2 ENSMUST00000019987 ENSMUSP00000019987 TRANSLATION protein_coding - CCDS23789.1 1 555.0 0.0 0.0 0.1 123.4 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000019842 Traf3ip2 ENSMUST00000155945 - NO_TRANSLATION retained_intron ENSMUSG00000019842 Traf3ip2 ENSMUST00000131629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020101 Vsir ENSMUST00000164027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020101 Vsir ENSMUST00000105460 ENSMUSP00000101100 TRANSLATION protein_coding - CCDS48569.1 1 308.0 0.0 3.298 9.1 37.4 4.0 2,-3 0.9754 2 9.0 ALTERNATIVE:1 ENSMUSG00000020101 Vsir ENSMUST00000169139 - NO_TRANSLATION retained_intron ENSMUSG00000020101 Vsir ENSMUST00000020301 ENSMUSP00000020301 TRANSLATION protein_coding - CCDS35912.1 1 309.0 0.0 3.298 9.1 37.4 4.0 2,-3 1.0 2 9.0 PRINCIPAL:4 ENSMUSG00000020101 Vsir ENSMUST00000170507 ENSMUSP00000127569 TRANSLATION protein_coding stop - 5 162.0 0.0 2.0 0.0 0.0 4.0 2,-3 0.0114 1 -2.0 MINOR ENSMUSG00000020101 Vsir ENSMUST00000169621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020101 Vsir ENSMUST00000105459 ENSMUSP00000101099 TRANSLATION protein_coding - - 5 227.0 0.0 2.498 0.0 29.7 4.0 -4,-2 0.0082 1 4.398 MINOR ENSMUSG00000048745 Or6c33 ENSMUST00000214917 ENSMUSP00000150464 TRANSLATION protein_coding - CCDS24345.1 5 312.0 0.0 1.0 11.4 161.3 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048745 Or6c33 ENSMUST00000215791 ENSMUSP00000150332 TRANSLATION protein_coding - CCDS24345.1 5 312.0 0.0 1.0 11.4 161.3 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048745 Or6c33 ENSMUST00000059244 ENSMUSP00000052995 TRANSLATION protein_coding - CCDS24345.1 - 312.0 0.0 1.0 11.4 161.3 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020096 Tbata ENSMUST00000121297 ENSMUSP00000113253 TRANSLATION protein_coding - CCDS23874.2 1 192.0 0.0 0.0 0.0 109.6 0.0 -4,-5 0.0315 3 0.0 MINOR ENSMUSG00000020096 Tbata ENSMUST00000140456 ENSMUSP00000151410 TRANSLATION protein_coding - - 5 100.0 0.0 0.0 0.0 43.2 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000020096 Tbata ENSMUST00000122261 ENSMUSP00000113902 TRANSLATION protein_coding - CCDS48572.1 5 359.0 0.0 0.75 0.1 253.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000020096 Tbata ENSMUST00000131879 ENSMUSP00000118942 TRANSLATION nonsense_mediated_decay - - 5 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020096 Tbata ENSMUST00000148181 ENSMUSP00000151940 TRANSLATION protein_coding - - 1 102.0 0.0 0.0 0.0 68.1 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000020096 Tbata ENSMUST00000151886 ENSMUSP00000151775 TRANSLATION protein_coding - - 1 66.0 0.0 0.0 0.0 38.6 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000020096 Tbata ENSMUST00000143207 ENSMUSP00000151724 TRANSLATION protein_coding - - 1 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000020096 Tbata ENSMUST00000126831 ENSMUSP00000119957 TRANSLATION nonsense_mediated_decay start - 1 157.0 0.0 0.0 0.0 153.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020096 Tbata ENSMUST00000035894 ENSMUSP00000036422 TRANSLATION protein_coding - CCDS23873.1 5 393.0 0.0 0.75 0.0 209.6 0.0 -4,-5 0.1816 3 9.354 MINOR ENSMUSG00000020256 Aldh1l2 ENSMUST00000146640 ENSMUSP00000117076 TRANSLATION protein_coding - - 1 810.0 29.0 18.05 2.4 749.9 0.0 -4,-5 0.0985 26 10.77 MINOR ENSMUSG00000020256 Aldh1l2 ENSMUST00000138858 - NO_TRANSLATION retained_intron ENSMUSG00000020256 Aldh1l2 ENSMUST00000141184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020256 Aldh1l2 ENSMUST00000143793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020256 Aldh1l2 ENSMUST00000125193 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020256 Aldh1l2 ENSMUST00000020497 ENSMUSP00000020497 TRANSLATION protein_coding - CCDS24077.1 1 923.0 29.0 20.05 31.9 806.7 0.0 -4,0 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000020256 Aldh1l2 ENSMUST00000147381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055515 Vmn2r81 ENSMUST00000020547 ENSMUSP00000020547 TRANSLATION protein_coding - CCDS23976.1 1 865.0 4.0 2.886 0.1 369.0 0.0 2,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020170 Frs2 ENSMUST00000020381 ENSMUSP00000020381 TRANSLATION protein_coding - CCDS24190.1 1 508.0 0.0 2.75 18.7 86.5 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000020170 Frs2 ENSMUST00000219483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020170 Frs2 ENSMUST00000218868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020170 Frs2 ENSMUST00000219104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048185 Rnf7l ENSMUST00000054760 ENSMUSP00000097258 TRANSLATION protein_coding - - - 112.0 12.0 1.0 30.9 71.8 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000069668 Sult3a1 ENSMUST00000092597 ENSMUSP00000090259 TRANSLATION protein_coding - CCDS23771.1 5 293.0 19.0 6.0 6.8 266.9 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000069668 Sult3a1 ENSMUST00000218204 ENSMUSP00000151228 TRANSLATION protein_coding - CCDS23771.1 1 293.0 19.0 6.0 6.8 266.9 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000028630 Dyrk2 ENSMUST00000218692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000028630 Dyrk2 ENSMUST00000004281 ENSMUSP00000004281 TRANSLATION protein_coding - CCDS24201.1 1 599.0 20.0 1.0 15.9 196.1 0.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000028630 Dyrk2 ENSMUST00000218477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020124 Usp15 ENSMUST00000220377 ENSMUSP00000151244 TRANSLATION protein_coding - CCDS24217.1 1 981.0 4.0 13.295 17.1 526.9 0.0 -4,-5 1.0 32 16.0 PRINCIPAL:3 ENSMUSG00000020124 Usp15 ENSMUST00000220284 - NO_TRANSLATION retained_intron ENSMUSG00000020124 Usp15 ENSMUST00000218079 - NO_TRANSLATION retained_intron ENSMUSG00000020124 Usp15 ENSMUST00000219413 - NO_TRANSLATION retained_intron ENSMUSG00000020124 Usp15 ENSMUST00000020334 ENSMUSP00000020334 TRANSLATION protein_coding - - 1 952.0 4.0 13.295 17.1 526.9 0.0 -4,-5 0.8857 30 16.0 ALTERNATIVE:1 ENSMUSG00000020124 Usp15 ENSMUST00000218042 - NO_TRANSLATION retained_intron ENSMUSG00000020124 Usp15 ENSMUST00000219010 - NO_TRANSLATION retained_intron ENSMUSG00000020124 Usp15 ENSMUST00000217985 - NO_TRANSLATION retained_intron ENSMUSG00000020124 Usp15 ENSMUST00000219937 - NO_TRANSLATION retained_intron ENSMUSG00000020124 Usp15 ENSMUST00000219619 ENSMUSP00000152028 TRANSLATION protein_coding start/stop - 3 138.0 0.0 3.3 0.0 138.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020124 Usp15 ENSMUST00000219992 - NO_TRANSLATION retained_intron ENSMUSG00000019808 Adat2 ENSMUST00000019944 ENSMUSP00000019944 TRANSLATION protein_coding - CCDS35847.1 1 191.0 5.0 5.15 7.8 73.9 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000025402 Nab2 ENSMUST00000026469 ENSMUSP00000026469 TRANSLATION protein_coding - CCDS24247.1 1 525.0 0.0 1.4 11.3 314.0 0.0 -4,-7 1.0 7 11.0 PRINCIPAL:3 ENSMUSG00000025402 Nab2 ENSMUST00000129252 ENSMUSP00000118036 TRANSLATION protein_coding stop - 2 46.0 0.0 0.0 0.0 73.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025402 Nab2 ENSMUST00000099157 ENSMUSP00000096761 TRANSLATION protein_coding - CCDS48719.1 1 461.0 0.0 1.4 7.8 314.0 0.0 -4,-7 0.7629 6 9.98 ALTERNATIVE:1 ENSMUSG00000025402 Nab2 ENSMUST00000128780 ENSMUSP00000121737 TRANSLATION protein_coding stop - 3 66.0 0.0 0.0 0.0 121.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000096380 Gm19668 ENSMUST00000178581 ENSMUSP00000136230 TRANSLATION protein_coding - CCDS70050.1 - 248.0 0.0 0.0 0.0 70.3 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000019804 Snx3 ENSMUST00000105499 ENSMUSP00000101138 TRANSLATION protein_coding - - 5 130.0 0.0 3.75 2.8 41.6 0.0 -4,-5 0.0267 6 6.746 MINOR ENSMUSG00000019804 Snx3 ENSMUST00000105500 ENSMUSP00000101139 TRANSLATION protein_coding - - 5 140.0 0.0 4.0 2.1 78.5 0.0 -4,-5 0.0282 6 9.424 MINOR ENSMUSG00000019804 Snx3 ENSMUST00000019939 ENSMUSP00000019939 TRANSLATION protein_coding - CCDS23812.1 1 162.0 0.0 4.75 36.9 98.1 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000038510 Rpf2 ENSMUST00000045114 ENSMUSP00000035456 TRANSLATION protein_coding - CCDS35885.1 1 273.0 0.0 8.33 7.5 153.2 0.0 -4,-6 0.3511 6 11.632 MINOR ENSMUSG00000038510 Rpf2 ENSMUST00000183052 ENSMUSP00000138646 TRANSLATION protein_coding stop - 3 205.0 0.0 6.08 0.0 73.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038510 Rpf2 ENSMUST00000182287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038510 Rpf2 ENSMUST00000181995 ENSMUSP00000138425 TRANSLATION protein_coding stop - 3 257.0 0.0 7.33 0.0 129.3 0.0 -4,-5 0.0021 5 -2.0 MINOR ENSMUSG00000038510 Rpf2 ENSMUST00000183309 ENSMUSP00000138581 TRANSLATION protein_coding - CCDS59543.1 1 306.0 0.0 9.08 24.0 153.2 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000038510 Rpf2 ENSMUST00000183114 ENSMUSP00000138750 TRANSLATION protein_coding stop - 3 153.0 0.0 4.25 0.0 76.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000085111 Ascl4 ENSMUST00000170396 ENSMUSP00000137650 TRANSLATION protein_coding - CCDS59549.1 - 144.0 0.0 1.6 0.4 60.2 0.0 -3,1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000085111 Ascl4 ENSMUST00000156605 ENSMUSP00000137794 TRANSLATION nonsense_mediated_decay start - 1 50.0 0.0 1.0 0.0 21.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071317 Bves ENSMUST00000213557 - NO_TRANSLATION retained_intron ENSMUSG00000071317 Bves ENSMUST00000095715 ENSMUSP00000093382 TRANSLATION protein_coding - CCDS23828.1 1 358.0 0.0 4.8 16.5 152.7 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000019849 Prep ENSMUST00000099858 ENSMUSP00000097444 TRANSLATION protein_coding - CCDS23826.1 1 710.0 11.0 14.25 26.8 792.9 0.0 -4,-5 1.0 30 22.0 PRINCIPAL:1 ENSMUSG00000020098 Pcbd1 ENSMUST00000020298 ENSMUSP00000020298 TRANSLATION protein_coding - CCDS35913.1 1 104.0 8.0 2.75 36.2 106.9 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000020098 Pcbd1 ENSMUST00000218005 ENSMUSP00000151542 TRANSLATION protein_coding - - 3 60.0 8.0 1.75 4.5 76.6 0.0 -4,-6 0.0328 2 14.394 MINOR ENSMUSG00000036602 Alx1 ENSMUST00000218508 - NO_TRANSLATION retained_intron ENSMUSG00000036602 Alx1 ENSMUST00000217946 ENSMUSP00000152017 TRANSLATION protein_coding - - 5 377.0 0.0 1.6 0.0 120.3 0.0 -4,-5 0.046 - 12.0 MINOR ENSMUSG00000036602 Alx1 ENSMUST00000164226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036602 Alx1 ENSMUST00000040859 ENSMUSP00000042512 TRANSLATION protein_coding - CCDS24155.1 1 326.0 0.0 1.6 24.0 120.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036602 Alx1 ENSMUST00000218681 ENSMUSP00000151728 TRANSLATION nonsense_mediated_decay - - 5 255.0 0.0 1.6 0.0 83.2 0.0 -4,-5 0.0252 - -2.0 MINOR ENSMUSG00000036602 Alx1 ENSMUST00000219194 ENSMUSP00000152018 TRANSLATION protein_coding - CCDS24155.1 5 326.0 0.0 1.6 24.0 120.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036602 Alx1 ENSMUST00000167156 ENSMUSP00000129230 TRANSLATION protein_coding - CCDS24155.1 5 326.0 0.0 1.6 24.0 120.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036602 Alx1 ENSMUST00000218282 ENSMUSP00000151776 TRANSLATION protein_coding - CCDS24155.1 5 326.0 0.0 1.6 24.0 120.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000051736 Fam229b ENSMUST00000063204 ENSMUSP00000063508 TRANSLATION protein_coding - CCDS23786.1 1 80.0 0.0 0.0 12.5 172.8 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000051736 Fam229b ENSMUST00000135785 ENSMUSP00000118928 TRANSLATION protein_coding - CCDS23786.1 3 80.0 0.0 0.0 12.5 172.8 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000051736 Fam229b ENSMUST00000125042 ENSMUSP00000121708 TRANSLATION protein_coding - - 5 63.0 0.0 0.0 0.0 71.8 0.0 -4,-7 0.0004 - 0.0 MINOR ENSMUSG00000051736 Fam229b ENSMUST00000154981 - NO_TRANSLATION retained_intron ENSMUSG00000051736 Fam229b ENSMUST00000149949 ENSMUSP00000121946 TRANSLATION protein_coding - CCDS23786.1 3 80.0 0.0 0.0 12.5 172.8 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000051736 Fam229b ENSMUST00000139743 ENSMUSP00000118545 TRANSLATION protein_coding - CCDS23786.1 5 80.0 0.0 0.0 12.5 172.8 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000051736 Fam229b ENSMUST00000137132 ENSMUSP00000119802 TRANSLATION protein_coding - CCDS23786.1 5 80.0 0.0 0.0 12.5 172.8 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000051736 Fam229b ENSMUST00000134279 ENSMUSP00000118858 TRANSLATION protein_coding - CCDS23786.1 3 80.0 0.0 0.0 12.5 172.8 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000051736 Fam229b ENSMUST00000124941 ENSMUSP00000123540 TRANSLATION protein_coding - CCDS23786.1 1 80.0 0.0 0.0 12.5 172.8 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000051736 Fam229b ENSMUST00000136546 ENSMUSP00000121597 TRANSLATION protein_coding - CCDS23786.1 3 80.0 0.0 0.0 12.5 172.8 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000025351 Cd63 ENSMUST00000220245 - NO_TRANSLATION retained_intron ENSMUSG00000025351 Cd63 ENSMUST00000105229 ENSMUSP00000100862 TRANSLATION protein_coding - CCDS24297.1 1 238.0 0.0 4.3 12.1 180.0 5.0 -1,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000025351 Cd63 ENSMUST00000218450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025351 Cd63 ENSMUST00000219317 ENSMUSP00000151313 TRANSLATION protein_coding - CCDS24297.1 5 238.0 0.0 4.3 12.1 180.0 5.0 -1,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000025351 Cd63 ENSMUST00000220308 ENSMUSP00000151955 TRANSLATION protein_coding stop - 3 164.0 0.0 3.04 0.0 131.0 4.0 -1,-5 0.0049 1 -2.0 MINOR ENSMUSG00000025351 Cd63 ENSMUST00000026407 ENSMUSP00000026407 TRANSLATION protein_coding - CCDS24297.1 1 238.0 0.0 4.3 12.1 180.0 5.0 -1,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000062873 Or7a39 ENSMUST00000078414 ENSMUSP00000077517 TRANSLATION protein_coding - CCDS48615.1 2 310.0 0.0 1.0 8.7 163.0 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019992 Mtfr2 ENSMUST00000169712 ENSMUSP00000129315 TRANSLATION protein_coding - CCDS48511.1 1 361.0 0.0 0.0 0.0 286.3 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000019992 Mtfr2 ENSMUST00000213374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019992 Mtfr2 ENSMUST00000217608 ENSMUSP00000150399 TRANSLATION protein_coding stop - 3 186.0 0.0 0.0 0.0 139.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000046822 Slc39a3 ENSMUST00000152177 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046822 Slc39a3 ENSMUST00000154877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046822 Slc39a3 ENSMUST00000117276 ENSMUSP00000113147 TRANSLATION protein_coding - CCDS24041.1 1 317.0 0.0 0.0 18.2 149.3 8.0 0,-4 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000046822 Slc39a3 ENSMUST00000168076 ENSMUSP00000128256 TRANSLATION protein_coding - CCDS24041.1 1 317.0 0.0 0.0 18.2 149.3 8.0 0,-4 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000046822 Slc39a3 ENSMUST00000059551 ENSMUSP00000057094 TRANSLATION protein_coding - CCDS24041.1 1 317.0 0.0 0.0 18.2 149.3 8.0 0,-4 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000040034 Nup43 ENSMUST00000162346 - NO_TRANSLATION retained_intron ENSMUSG00000040034 Nup43 ENSMUST00000162527 - NO_TRANSLATION retained_intron ENSMUSG00000040034 Nup43 ENSMUST00000161060 - NO_TRANSLATION retained_intron ENSMUSG00000040034 Nup43 ENSMUST00000040135 ENSMUSP00000046732 TRANSLATION protein_coding - CCDS48493.1 1 380.0 0.0 5.13 19.2 0.0 0.0 -4,-6 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000061371 Zfp873 ENSMUST00000210325 ENSMUSP00000148219 TRANSLATION protein_coding - CCDS36009.2 5 667.0 77.0 2.75 0.0 419.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000061371 Zfp873 ENSMUST00000209622 ENSMUSP00000147990 TRANSLATION protein_coding - - 2 94.0 0.0 1.25 0.0 75.9 0.0 -4,-5 0.0 - 2.73 MINOR ENSMUSG00000061371 Zfp873 ENSMUST00000105313 ENSMUSP00000100950 TRANSLATION protein_coding - CCDS83738.1 1 630.0 77.0 1.5 0.0 346.9 0.0 -4,-5 0.1367 - 10.908 MINOR ENSMUSG00000061371 Zfp873 ENSMUST00000211338 - NO_TRANSLATION retained_intron ENSMUSG00000061371 Zfp873 ENSMUST00000209614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000112600 Gm49918 ENSMUST00000220062 ENSMUSP00000151479 TRANSLATION protein_coding - - - 240.0 0.0 0.0 0.0 58.5 0.0 -4,-5 0.7142 - 6.0 PRINCIPAL:1 ENSMUSG00000000732 Icosl ENSMUST00000219038 ENSMUSP00000151346 TRANSLATION protein_coding start - 5 344.0 0.0 1.92 0.0 64.7 1.0 -1,-5 0.0809 5 -2.0 MINOR ENSMUSG00000000732 Icosl ENSMUST00000217675 - NO_TRANSLATION retained_intron ENSMUSG00000000732 Icosl ENSMUST00000219633 - NO_TRANSLATION retained_intron ENSMUSG00000000732 Icosl ENSMUST00000105393 ENSMUSP00000101032 TRANSLATION protein_coding - CCDS35956.1 1 322.0 0.0 1.92 0.0 64.7 1.0 -2,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000040009 Gnaz ENSMUST00000037813 ENSMUSP00000036087 TRANSLATION protein_coding - CCDS23922.1 1 355.0 24.0 2.0 36.9 395.2 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000040009 Gnaz ENSMUST00000159991 ENSMUSP00000124639 TRANSLATION protein_coding - CCDS23922.1 1 355.0 24.0 2.0 36.9 395.2 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000040009 Gnaz ENSMUST00000160421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073427 Gm4924 ENSMUST00000211099 ENSMUSP00000147929 TRANSLATION protein_coding - - 1 68.0 0.0 1.75 0.4 85.3 0.0 -4,-5 0.0 - 2.4 MINOR ENSMUSG00000073427 Gm4924 ENSMUST00000210025 ENSMUSP00000148243 TRANSLATION nonsense_mediated_decay - - 5 68.0 0.0 1.75 0.4 85.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073427 Gm4924 ENSMUST00000210381 ENSMUSP00000147402 TRANSLATION protein_coding - - 2 966.0 72.0 3.55 0.0 428.3 0.0 -4,-5 0.8841 - 18.0 PRINCIPAL:1 ENSMUSG00000073427 Gm4924 ENSMUST00000165906 ENSMUSP00000131819 TRANSLATION protein_coding start - - 225.0 24.0 1.0 0.0 110.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073427 Gm4924 ENSMUST00000211078 ENSMUSP00000147561 TRANSLATION nonsense_mediated_decay start - 5 96.0 0.0 1.75 0.0 85.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032714 Syde1 ENSMUST00000040580 ENSMUSP00000043085 TRANSLATION protein_coding - CCDS48613.1 1 737.0 0.0 2.18 5.3 147.8 0.0 -4,-7 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000096718 Zfp781 ENSMUST00000219144 ENSMUSP00000151576 TRANSLATION protein_coding - CCDS48649.1 1 243.0 0.0 1.8 0.0 75.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096718 Zfp781 ENSMUST00000076281 ENSMUSP00000075630 TRANSLATION protein_coding - CCDS48649.1 5 243.0 0.0 1.8 0.0 75.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037171 Nodal ENSMUST00000049339 ENSMUSP00000039653 TRANSLATION protein_coding - CCDS23878.1 1 354.0 0.0 1.2 6.1 102.8 0.0 2,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025436 Atp23 ENSMUST00000168520 ENSMUSP00000128382 TRANSLATION protein_coding - CCDS48710.1 1 246.0 3.0 3.05 5.6 190.4 0.0 -4,-5 1.0 2 17.0 PRINCIPAL:1 ENSMUSG00000025436 Atp23 ENSMUST00000026504 ENSMUSP00000026504 TRANSLATION protein_coding - CCDS24220.1 1 201.0 3.0 3.05 0.0 136.0 0.0 -4,-5 0.0573 2 11.736 MINOR ENSMUSG00000025436 Atp23 ENSMUST00000220051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020235 Fzr1 ENSMUST00000138343 - NO_TRANSLATION retained_intron ENSMUSG00000020235 Fzr1 ENSMUST00000150824 - NO_TRANSLATION retained_intron ENSMUSG00000020235 Fzr1 ENSMUST00000140901 ENSMUSP00000114203 TRANSLATION protein_coding - CCDS24057.1 1 493.0 0.0 9.166 29.8 93.4 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000020235 Fzr1 ENSMUST00000020457 ENSMUSP00000020457 TRANSLATION nonsense_mediated_decay - - 1 361.0 0.0 5.491 0.0 47.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000020235 Fzr1 ENSMUST00000127203 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020235 Fzr1 ENSMUST00000118812 ENSMUSP00000112868 TRANSLATION protein_coding - - 5 404.0 0.0 8.166 1.0 93.4 0.0 -4,-5 0.0668 8 10.002 MINOR ENSMUSG00000004929 Thop1 ENSMUST00000171484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004929 Thop1 ENSMUST00000166404 - NO_TRANSLATION retained_intron ENSMUSG00000004929 Thop1 ENSMUST00000166015 - NO_TRANSLATION retained_intron ENSMUSG00000004929 Thop1 ENSMUST00000005057 ENSMUSP00000005057 TRANSLATION protein_coding - CCDS24042.1 1 687.0 4.0 12.0 8.9 537.7 0.0 -4,-5 1.0 26 19.0 PRINCIPAL:1 ENSMUSG00000004929 Thop1 ENSMUST00000167658 - NO_TRANSLATION retained_intron ENSMUSG00000062914 Or6c207 ENSMUST00000080313 ENSMUSP00000079191 TRANSLATION protein_coding - CCDS24312.1 - 311.0 0.0 1.0 10.0 144.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062914 Or6c207 ENSMUST00000204573 ENSMUSP00000145475 TRANSLATION protein_coding - CCDS24312.1 5 311.0 0.0 1.0 10.0 144.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019790 Stxbp5 ENSMUST00000148009 - NO_TRANSLATION retained_intron ENSMUSG00000019790 Stxbp5 ENSMUST00000136259 - NO_TRANSLATION retained_intron ENSMUSG00000019790 Stxbp5 ENSMUST00000141722 ENSMUSP00000123253 TRANSLATION protein_coding - CCDS35837.2 5 1116.0 0.0 7.928 22.4 130.1 0.0 -4,-2 1.0 21 11.452 PRINCIPAL:4 ENSMUSG00000019790 Stxbp5 ENSMUST00000125200 ENSMUSP00000121507 TRANSLATION protein_coding - - 5 1099.0 0.0 6.428 11.6 130.1 0.0 -4,-2 0.5986 20 6.708 MINOR ENSMUSG00000019790 Stxbp5 ENSMUST00000131828 - NO_TRANSLATION retained_intron ENSMUSG00000019790 Stxbp5 ENSMUST00000128487 - NO_TRANSLATION retained_intron ENSMUSG00000019790 Stxbp5 ENSMUST00000136324 ENSMUSP00000123355 TRANSLATION protein_coding start/stop - 3 263.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 7 -2.0 MINOR ENSMUSG00000019790 Stxbp5 ENSMUST00000139199 - NO_TRANSLATION retained_intron ENSMUSG00000019790 Stxbp5 ENSMUST00000219200 - NO_TRANSLATION retained_intron ENSMUSG00000019790 Stxbp5 ENSMUST00000038213 ENSMUSP00000044535 TRANSLATION protein_coding - - 5 1152.0 0.0 7.928 25.8 130.1 0.0 -4,-2 0.9057 21 12.0 ALTERNATIVE:1 ENSMUSG00000019790 Stxbp5 ENSMUST00000139779 - NO_TRANSLATION retained_intron ENSMUSG00000019790 Stxbp5 ENSMUST00000151435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071340 Trappc3l ENSMUST00000095758 ENSMUSP00000093432 TRANSLATION protein_coding - CCDS48535.1 1 181.0 0.0 4.0 20.8 116.8 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000071340 Trappc3l ENSMUST00000220095 ENSMUSP00000151285 TRANSLATION protein_coding start - 3 164.0 0.0 4.0 0.0 116.8 0.0 -4,-7 0.0139 - -2.0 MINOR ENSMUSG00000036499 Eea1 ENSMUST00000218291 ENSMUSP00000151703 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000036499 Eea1 ENSMUST00000218517 ENSMUSP00000151611 TRANSLATION nonsense_mediated_decay - - 1 131.0 4.0 1.0 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000036499 Eea1 ENSMUST00000218088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036499 Eea1 ENSMUST00000219207 - NO_TRANSLATION retained_intron ENSMUSG00000036499 Eea1 ENSMUST00000053484 ENSMUSP00000061493 TRANSLATION protein_coding - CCDS36042.1 1 1411.0 12.0 5.0 16.1 68.0 0.0 -4,-2 1.0 59 22.0 PRINCIPAL:1 ENSMUSG00000019861 Gopc ENSMUST00000220099 - NO_TRANSLATION retained_intron ENSMUSG00000019861 Gopc ENSMUST00000217710 - NO_TRANSLATION retained_intron ENSMUSG00000019861 Gopc ENSMUST00000105475 ENSMUSP00000101115 TRANSLATION protein_coding - - 5 463.0 0.0 5.3 0.8 61.4 0.0 -4,-6 0.2966 12 8.0 ALTERNATIVE:2 ENSMUSG00000019861 Gopc ENSMUST00000020008 ENSMUSP00000020008 TRANSLATION protein_coding - CCDS35898.1 1 455.0 0.0 5.3 0.8 61.4 0.0 -4,-6 1.0 12 8.0 PRINCIPAL:2 ENSMUSG00000019861 Gopc ENSMUST00000217995 ENSMUSP00000151595 TRANSLATION protein_coding start - 3 103.0 0.0 0.7 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019861 Gopc ENSMUST00000217753 ENSMUSP00000151773 TRANSLATION protein_coding start - 1 403.0 0.0 4.7 0.0 61.4 0.0 -4,-5 0.0137 12 -2.0 MINOR ENSMUSG00000002147 Stat6 ENSMUST00000156231 - NO_TRANSLATION retained_intron ENSMUSG00000002147 Stat6 ENSMUST00000092074 ENSMUSP00000089708 TRANSLATION protein_coding - CCDS36082.1 1 837.0 0.0 12.465 2.1 749.2 0.0 -4,-7 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000002147 Stat6 ENSMUST00000145470 - NO_TRANSLATION retained_intron ENSMUSG00000002147 Stat6 ENSMUST00000120279 ENSMUSP00000112722 TRANSLATION protein_coding stop - 2 113.0 0.0 0.7 0.0 50.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000002147 Stat6 ENSMUST00000128072 - NO_TRANSLATION retained_intron ENSMUSG00000090439 Gm17455 ENSMUST00000218360 ENSMUSP00000156882 TRANSLATION protein_coding stop - 3 91.0 0.0 0.4 0.0 0.0 1.0 -4,-7 0.0175 - -2.0 MINOR ENSMUSG00000090439 Gm17455 ENSMUST00000218974 ENSMUSP00000156413 TRANSLATION protein_coding stop - 3 84.0 0.0 0.5 0.0 0.0 1.0 -4,-7 0.0505 - -2.0 MINOR ENSMUSG00000090439 Gm17455 ENSMUST00000164428 ENSMUSP00000129705 TRANSLATION protein_coding - CCDS48570.1 3 128.0 0.0 0.4 7.9 0.0 1.0 -4,-7 1.0 - 6.8 PRINCIPAL:1 ENSMUSG00000019777 Hdac2 ENSMUST00000128031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019777 Hdac2 ENSMUST00000019911 ENSMUSP00000019911 TRANSLATION protein_coding - CCDS23783.1 1 488.0 3.0 10.25 30.0 281.3 0.0 -4,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000019777 Hdac2 ENSMUST00000105510 ENSMUSP00000101149 TRANSLATION protein_coding - - 1 304.0 3.0 7.325 0.0 252.9 0.0 -4,-5 0.0048 4 7.446 MINOR ENSMUSG00000019777 Hdac2 ENSMUST00000123010 - NO_TRANSLATION retained_intron ENSMUSG00000054934 Kcnmb4 ENSMUST00000164271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054934 Kcnmb4 ENSMUST00000091477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054934 Kcnmb4 ENSMUST00000068233 ENSMUSP00000065384 TRANSLATION protein_coding - CCDS24184.1 1 210.0 0.0 3.0 23.0 252.5 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000054934 Kcnmb4 ENSMUST00000087965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020070 Rufy2 ENSMUST00000143726 - NO_TRANSLATION retained_intron ENSMUSG00000020070 Rufy2 ENSMUST00000062600 ENSMUSP00000059982 TRANSLATION nonsense_mediated_decay - - 1 217.0 0.0 4.65 0.0 102.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020070 Rufy2 ENSMUST00000156302 ENSMUSP00000116938 TRANSLATION protein_coding stop - 5 59.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000020070 Rufy2 ENSMUST00000131718 ENSMUSP00000121419 TRANSLATION protein_coding - - 1 437.0 0.0 4.65 3.0 102.2 0.0 -4,-5 0.0659 7 2.806 MINOR ENSMUSG00000020070 Rufy2 ENSMUST00000119567 ENSMUSP00000113429 TRANSLATION protein_coding - CCDS48582.1 1 606.0 8.0 7.4 7.5 174.0 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000020070 Rufy2 ENSMUST00000143594 ENSMUSP00000115339 TRANSLATION nonsense_mediated_decay - - 1 437.0 0.0 4.65 3.0 102.2 0.0 -4,-5 0.0659 - -2.0 MINOR ENSMUSG00000020070 Rufy2 ENSMUST00000122231 ENSMUSP00000113754 TRANSLATION protein_coding - - 5 403.0 0.0 3.65 2.0 25.0 0.0 -4,-5 0.0684 7 0.308 MINOR ENSMUSG00000020070 Rufy2 ENSMUST00000148259 - NO_TRANSLATION retained_intron ENSMUSG00000015202 Cnksr3 ENSMUST00000015346 ENSMUSP00000015346 TRANSLATION protein_coding - CCDS56690.1 1 555.0 0.0 2.85 15.7 557.1 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000015202 Cnksr3 ENSMUST00000150282 ENSMUSP00000115863 TRANSLATION protein_coding - - 1 314.0 0.0 0.85 0.0 338.5 0.0 -4,-5 0.0007 5 1.788 MINOR ENSMUSG00000025400 Tac2 ENSMUST00000179960 ENSMUSP00000136622 TRANSLATION protein_coding - CCDS24248.1 1 116.0 0.0 0.0 0.4 96.4 0.0 3,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000025400 Tac2 ENSMUST00000218048 - NO_TRANSLATION retained_intron ENSMUSG00000025400 Tac2 ENSMUST00000217729 - NO_TRANSLATION retained_intron ENSMUSG00000025400 Tac2 ENSMUST00000026466 ENSMUSP00000026466 TRANSLATION protein_coding - CCDS24248.1 1 116.0 0.0 0.0 0.4 96.4 0.0 3,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000093674 Rpl41 ENSMUST00000176010 ENSMUSP00000135533 TRANSLATION protein_coding - CCDS56753.1 1 25.0 0.0 0.83 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000093674 Rpl41 ENSMUST00000176184 - NO_TRANSLATION retained_intron ENSMUSG00000093674 Rpl41 ENSMUST00000177513 - NO_TRANSLATION retained_intron ENSMUSG00000093674 Rpl41 ENSMUST00000176966 - NO_TRANSLATION retained_intron ENSMUSG00000093674 Rpl41 ENSMUST00000177163 ENSMUSP00000134737 TRANSLATION protein_coding - CCDS56753.1 1 25.0 0.0 0.83 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000093674 Rpl41 ENSMUST00000176683 ENSMUSP00000135158 TRANSLATION protein_coding - CCDS56753.1 2 25.0 0.0 0.83 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000093674 Rpl41 ENSMUST00000176906 ENSMUSP00000135298 TRANSLATION protein_coding - - 3 46.0 0.0 0.33 0.0 0.0 0.0 -4,-2 0.0271 - 2.388 MINOR ENSMUSG00000033126 Ybey ENSMUST00000218564 - NO_TRANSLATION retained_intron ENSMUSG00000033126 Ybey ENSMUST00000049185 ENSMUSP00000045647 TRANSLATION protein_coding - CCDS23946.1 1 164.0 3.0 3.5 23.7 0.0 0.0 -4,0 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000034748 Sirt6 ENSMUST00000119324 ENSMUSP00000113953 TRANSLATION protein_coding - CCDS48645.1 1 294.0 29.0 7.0 0.1 89.8 0.0 -3,-5 0.0631 2 15.498 MINOR ENSMUSG00000034748 Sirt6 ENSMUST00000143424 ENSMUSP00000118238 TRANSLATION protein_coding stop - 5 64.0 11.0 1.75 0.0 29.6 0.0 -3,-5 0.0 1 -2.0 MINOR ENSMUSG00000034748 Sirt6 ENSMUST00000042923 ENSMUSP00000048971 TRANSLATION protein_coding - CCDS24066.1 1 334.0 29.0 8.25 0.4 89.8 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000034748 Sirt6 ENSMUST00000126477 - NO_TRANSLATION retained_intron ENSMUSG00000020029 Nudt4 ENSMUST00000020217 ENSMUSP00000020217 TRANSLATION protein_coding - CCDS24138.1 1 179.0 11.0 4.25 22.7 68.7 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000055170 Ifng ENSMUST00000068592 ENSMUSP00000063800 TRANSLATION protein_coding - CCDS24200.1 1 155.0 0.0 2.28 0.1 182.4 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055170 Ifng ENSMUST00000220309 - NO_TRANSLATION retained_intron ENSMUSG00000061961 Or6c217 ENSMUST00000071557 ENSMUSP00000071488 TRANSLATION protein_coding - CCDS24342.1 - 316.0 0.0 1.0 0.7 152.9 6.0 -4,-6 0.5469 - 12.0 MINOR ENSMUSG00000061961 Or6c217 ENSMUST00000216182 ENSMUSP00000151146 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 12.5 152.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019996 Map7 ENSMUST00000213312 ENSMUSP00000151101 TRANSLATION protein_coding - - 1 242.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 4 0.0 MINOR ENSMUSG00000019996 Map7 ENSMUST00000116259 ENSMUSP00000111963 TRANSLATION protein_coding - CCDS56694.1 1 738.0 0.0 1.5 0.3 145.7 0.0 -4,-5 0.7372 14 8.0 PRINCIPAL:3 ENSMUSG00000019996 Map7 ENSMUST00000216065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019996 Map7 ENSMUST00000215812 - NO_TRANSLATION retained_intron ENSMUSG00000019996 Map7 ENSMUST00000216909 - NO_TRANSLATION retained_intron ENSMUSG00000019996 Map7 ENSMUST00000213386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019996 Map7 ENSMUST00000216474 - NO_TRANSLATION retained_intron ENSMUSG00000019996 Map7 ENSMUST00000020173 ENSMUSP00000020173 TRANSLATION protein_coding - - 1 730.0 0.0 1.5 0.3 145.7 0.0 -4,-5 0.8326 13 8.0 ALTERNATIVE:2 ENSMUSG00000019996 Map7 ENSMUST00000214231 ENSMUSP00000149367 TRANSLATION protein_coding - - 3 101.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000019996 Map7 ENSMUST00000215924 ENSMUSP00000150818 TRANSLATION protein_coding stop - 2 147.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019996 Map7 ENSMUST00000214823 - NO_TRANSLATION retained_intron ENSMUSG00000019996 Map7 ENSMUST00000217251 - NO_TRANSLATION retained_intron ENSMUSG00000019996 Map7 ENSMUST00000216308 - NO_TRANSLATION retained_intron ENSMUSG00000033427 Upb1 ENSMUST00000129946 - NO_TRANSLATION retained_intron ENSMUSG00000033427 Upb1 ENSMUST00000219052 ENSMUSP00000151804 TRANSLATION protein_coding stop - 3 150.0 0.0 2.75 0.0 23.5 0.0 -4,-1 0.0004 1 -2.0 MINOR ENSMUSG00000033427 Upb1 ENSMUST00000138058 - NO_TRANSLATION retained_intron ENSMUSG00000033427 Upb1 ENSMUST00000132629 - NO_TRANSLATION retained_intron ENSMUSG00000033427 Upb1 ENSMUST00000039925 ENSMUSP00000049342 TRANSLATION protein_coding - CCDS23925.1 1 393.0 0.0 9.33 0.4 204.3 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000019890 Nts ENSMUST00000020040 ENSMUSP00000020040 TRANSLATION protein_coding - CCDS24154.1 1 169.0 0.0 0.0 21.2 240.9 0.0 3,-2 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000034974 Dapk3 ENSMUST00000217936 - NO_TRANSLATION retained_intron ENSMUSG00000034974 Dapk3 ENSMUST00000218227 ENSMUSP00000151499 TRANSLATION protein_coding start/stop - 3 135.0 0.0 2.16 0.0 32.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034974 Dapk3 ENSMUST00000219133 ENSMUSP00000151254 TRANSLATION protein_coding stop - 3 256.0 26.0 4.25 0.0 225.1 0.0 -4,-5 0.0067 1 -2.0 MINOR ENSMUSG00000034974 Dapk3 ENSMUST00000218698 - NO_TRANSLATION retained_intron ENSMUSG00000034974 Dapk3 ENSMUST00000047665 ENSMUSP00000035962 TRANSLATION protein_coding - CCDS24045.1 5 448.0 26.0 4.91 10.9 248.1 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000034974 Dapk3 ENSMUST00000178422 ENSMUSP00000137333 TRANSLATION protein_coding - CCDS24045.1 1 448.0 26.0 4.91 10.9 248.1 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000034974 Dapk3 ENSMUST00000218157 ENSMUSP00000151297 TRANSLATION protein_coding stop - 3 205.0 26.0 3.25 0.0 199.6 0.0 -4,-5 0.0012 1 -2.0 MINOR ENSMUSG00000034974 Dapk3 ENSMUST00000219944 - NO_TRANSLATION retained_intron ENSMUSG00000034974 Dapk3 ENSMUST00000219329 - NO_TRANSLATION retained_intron ENSMUSG00000034974 Dapk3 ENSMUST00000220076 - NO_TRANSLATION retained_intron ENSMUSG00000034974 Dapk3 ENSMUST00000219850 ENSMUSP00000151577 TRANSLATION protein_coding - CCDS24045.1 1 448.0 26.0 4.91 10.9 248.1 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000100689 Taar7e ENSMUST00000092656 ENSMUSP00000090326 TRANSLATION protein_coding - CCDS23743.1 - 358.0 0.0 1.0 0.4 192.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000008398 Elk3 ENSMUST00000133365 - NO_TRANSLATION retained_intron ENSMUSG00000008398 Elk3 ENSMUST00000129827 ENSMUSP00000122324 TRANSLATION nonsense_mediated_decay - CCDS83749.1 5 249.0 0.0 1.2 0.0 117.4 0.0 -3,-5 0.0854 2 -2.0 MINOR ENSMUSG00000008398 Elk3 ENSMUST00000151153 ENSMUSP00000121754 TRANSLATION protein_coding - CCDS70097.1 1 142.0 0.0 1.375 1.4 94.8 0.0 -3,-6 0.0739 1 9.966 MINOR ENSMUSG00000008398 Elk3 ENSMUST00000008542 ENSMUSP00000008542 TRANSLATION protein_coding - CCDS24124.1 1 409.0 0.0 1.575 20.5 117.4 0.0 -3,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020156 Pwwp3a ENSMUST00000136791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020156 Pwwp3a ENSMUST00000138801 - NO_TRANSLATION retained_intron ENSMUSG00000020156 Pwwp3a ENSMUST00000135598 - NO_TRANSLATION retained_intron ENSMUSG00000020156 Pwwp3a ENSMUST00000136208 - NO_TRANSLATION retained_intron ENSMUSG00000020156 Pwwp3a ENSMUST00000139431 - NO_TRANSLATION retained_intron ENSMUSG00000020156 Pwwp3a ENSMUST00000130260 ENSMUSP00000117519 TRANSLATION protein_coding stop - 2 219.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.045 2 -2.0 MINOR ENSMUSG00000020156 Pwwp3a ENSMUST00000020365 ENSMUSP00000020365 TRANSLATION protein_coding - CCDS24014.1 1 682.0 0.0 3.5 0.0 0.0 0.0 -4,-7 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000020156 Pwwp3a ENSMUST00000125784 - NO_TRANSLATION retained_intron ENSMUSG00000020156 Pwwp3a ENSMUST00000126917 - NO_TRANSLATION retained_intron ENSMUSG00000020156 Pwwp3a ENSMUST00000146538 - NO_TRANSLATION retained_intron ENSMUSG00000020156 Pwwp3a ENSMUST00000141962 - NO_TRANSLATION retained_intron ENSMUSG00000052151 Plpp2 ENSMUST00000063879 ENSMUSP00000069670 TRANSLATION protein_coding - CCDS35966.1 1 276.0 5.0 6.35 0.4 97.8 6.0 -2,-5 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000052151 Plpp2 ENSMUST00000166804 ENSMUSP00000133247 TRANSLATION protein_coding - CCDS78849.1 1 220.0 5.0 4.85 0.1 97.8 4.0 1,-3 0.1911 3 14.0 MINOR ENSMUSG00000052151 Plpp2 ENSMUST00000163602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052151 Plpp2 ENSMUST00000218241 ENSMUSP00000151683 TRANSLATION protein_coding - - 3 158.0 5.0 3.35 0.1 87.7 3.0 -4,-5 0.0037 1 10.382 MINOR ENSMUSG00000052151 Plpp2 ENSMUST00000165233 ENSMUSP00000127000 TRANSLATION nonsense_mediated_decay - - 1 80.0 0.0 0.5 0.0 0.0 0.0 2,-3 0.0027 - -2.0 MINOR ENSMUSG00000060843 Ctnna3 ENSMUST00000105440 ENSMUSP00000101080 TRANSLATION protein_coding - CCDS23901.1 1 895.0 0.0 13.95 12.3 576.9 0.0 -4,-5 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000060843 Ctnna3 ENSMUST00000133190 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060843 Ctnna3 ENSMUST00000135474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060843 Ctnna3 ENSMUST00000075099 ENSMUSP00000074606 TRANSLATION protein_coding - CCDS23901.1 5 895.0 0.0 13.95 12.3 576.9 0.0 -4,-5 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000060843 Ctnna3 ENSMUST00000105441 ENSMUSP00000101081 TRANSLATION protein_coding - CCDS23901.1 1 895.0 0.0 13.95 12.3 576.9 0.0 -4,-5 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000020017 Hal ENSMUST00000129421 ENSMUSP00000123336 TRANSLATION protein_coding - CCDS36036.1 1 657.0 11.0 12.38 13.8 676.1 0.0 -4,-6 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000020017 Hal ENSMUST00000016031 ENSMUSP00000016031 TRANSLATION nonsense_mediated_decay - - 5 167.0 0.0 0.75 0.0 30.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020017 Hal ENSMUST00000132624 - NO_TRANSLATION retained_intron ENSMUSG00000020017 Hal ENSMUST00000152883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037608 Bclaf1 ENSMUST00000043881 ENSMUSP00000043583 TRANSLATION protein_coding - CCDS35858.1 1 919.0 9.0 1.0 0.0 607.7 0.0 -4,-2 0.5017 21 14.0 ALTERNATIVE:2 ENSMUSG00000037608 Bclaf1 ENSMUST00000187338 - NO_TRANSLATION retained_intron ENSMUSG00000037608 Bclaf1 ENSMUST00000190156 ENSMUSP00000140428 TRANSLATION nonsense_mediated_decay - - 1 748.0 9.0 1.0 0.0 607.1 0.0 -4,-2 0.1379 16 -2.0 MINOR ENSMUSG00000037608 Bclaf1 ENSMUST00000185800 ENSMUSP00000140623 TRANSLATION protein_coding - CCDS78798.1 1 917.0 9.0 1.0 0.0 607.7 0.0 -4,-2 0.5122 21 14.0 ALTERNATIVE:2 ENSMUSG00000037608 Bclaf1 ENSMUST00000191438 ENSMUSP00000140702 TRANSLATION nonsense_mediated_decay start - 1 583.0 0.0 1.0 0.0 460.4 0.0 -4,-7 0.0497 17 -2.0 MINOR ENSMUSG00000037608 Bclaf1 ENSMUST00000186100 ENSMUSP00000140101 TRANSLATION nonsense_mediated_decay - - 1 750.0 9.0 1.0 0.0 607.1 0.0 -4,-2 0.1379 16 -2.0 MINOR ENSMUSG00000037608 Bclaf1 ENSMUST00000092678 ENSMUSP00000090349 TRANSLATION protein_coding - CCDS23721.1 1 870.0 9.0 1.0 0.0 607.7 0.0 -4,-2 1.0 19 14.0 PRINCIPAL:2 ENSMUSG00000037608 Bclaf1 ENSMUST00000191143 - NO_TRANSLATION retained_intron ENSMUSG00000037608 Bclaf1 ENSMUST00000216560 - NO_TRANSLATION retained_intron ENSMUSG00000037608 Bclaf1 ENSMUST00000189158 ENSMUSP00000140608 TRANSLATION nonsense_mediated_decay start - 3 43.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037608 Bclaf1 ENSMUST00000215262 - NO_TRANSLATION retained_intron ENSMUSG00000037608 Bclaf1 ENSMUST00000188546 - NO_TRANSLATION retained_intron ENSMUSG00000075706 Gpx4 ENSMUST00000097227 ENSMUSP00000094863 TRANSLATION protein_coding - CCDS24007.1 1 253.0 7.0 4.66 0.4 155.0 0.0 -4,-6 0.2158 11 18.0 MINOR ENSMUSG00000075706 Gpx4 ENSMUST00000144698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075706 Gpx4 ENSMUST00000183037 ENSMUSP00000138186 TRANSLATION protein_coding - - 2 157.0 7.0 4.16 0.0 155.0 0.0 -4,-5 0.0173 11 16.998 MINOR ENSMUSG00000075706 Gpx4 ENSMUST00000154095 - NO_TRANSLATION retained_intron ENSMUSG00000075706 Gpx4 ENSMUST00000105372 ENSMUSP00000101011 TRANSLATION protein_coding - CCDS35973.1 1 197.0 7.0 4.66 13.6 155.0 0.0 2,-4 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000075706 Gpx4 ENSMUST00000136081 - NO_TRANSLATION retained_intron ENSMUSG00000075706 Gpx4 ENSMUST00000145703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035620 Ric8b ENSMUST00000038523 ENSMUSP00000046981 TRANSLATION protein_coding - CCDS24085.1 1 560.0 0.0 5.41 12.5 423.2 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000035620 Ric8b ENSMUST00000217175 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035620 Ric8b ENSMUST00000095385 ENSMUSP00000093032 TRANSLATION protein_coding - CCDS24084.1 1 520.0 0.0 4.41 11.0 341.2 0.0 -4,-5 0.6897 7 7.692 MINOR ENSMUSG00000035620 Ric8b ENSMUST00000214820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035620 Ric8b ENSMUST00000214693 ENSMUSP00000148897 TRANSLATION protein_coding stop - 5 248.0 0.0 2.93 0.0 180.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038039 Gcc2 ENSMUST00000160677 - NO_TRANSLATION retained_intron ENSMUSG00000038039 Gcc2 ENSMUST00000160416 ENSMUSP00000123873 TRANSLATION protein_coding start/stop - 3 181.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038039 Gcc2 ENSMUST00000162860 ENSMUSP00000124152 TRANSLATION protein_coding - - 5 1576.0 0.0 1.2 0.0 185.7 0.0 -4,-5 0.4832 49 8.0 ALTERNATIVE:2 ENSMUSG00000038039 Gcc2 ENSMUST00000057659 ENSMUSP00000054033 TRANSLATION protein_coding - CCDS23859.1 1 1680.0 0.0 1.2 0.4 185.7 0.0 -4,-5 0.9604 54 8.0 ALTERNATIVE:2 ENSMUSG00000038039 Gcc2 ENSMUST00000161570 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038039 Gcc2 ENSMUST00000162984 ENSMUSP00000124988 TRANSLATION nonsense_mediated_decay - - 2 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038039 Gcc2 ENSMUST00000162965 - NO_TRANSLATION retained_intron ENSMUSG00000038039 Gcc2 ENSMUST00000162041 ENSMUSP00000124787 TRANSLATION protein_coding - - 1 1644.0 0.0 1.2 0.7 185.7 0.0 -4,-5 1.0 54 8.0 PRINCIPAL:4 ENSMUSG00000038039 Gcc2 ENSMUST00000160427 ENSMUSP00000124411 TRANSLATION protein_coding stop - 2 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000038039 Gcc2 ENSMUST00000160636 - NO_TRANSLATION retained_intron ENSMUSG00000034872 Gipc3 ENSMUST00000045102 ENSMUSP00000049236 TRANSLATION protein_coding - CCDS24054.1 1 297.0 0.0 4.55 0.1 30.8 0.0 -4,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000091455 Otogl ENSMUST00000165341 ENSMUSP00000129467 TRANSLATION protein_coding - CCDS56747.1 5 2325.0 0.0 11.4565 0.0 593.7 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020088 Sar1a ENSMUST00000218741 ENSMUSP00000151885 TRANSLATION nonsense_mediated_decay start - 3 95.0 9.0 2.75 0.0 132.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020088 Sar1a ENSMUST00000218968 - NO_TRANSLATION retained_intron ENSMUSG00000020088 Sar1a ENSMUST00000218474 ENSMUSP00000151444 TRANSLATION protein_coding stop - 2 81.0 9.0 2.08 0.0 85.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020088 Sar1a ENSMUST00000219055 ENSMUSP00000151361 TRANSLATION protein_coding stop - 3 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020088 Sar1a ENSMUST00000219174 - NO_TRANSLATION retained_intron ENSMUSG00000020088 Sar1a ENSMUST00000219506 ENSMUSP00000151383 TRANSLATION protein_coding - CCDS23883.1 3 198.0 16.0 5.33 36.9 214.3 0.0 -4,-7 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000020088 Sar1a ENSMUST00000020285 ENSMUSP00000020285 TRANSLATION protein_coding - CCDS23883.1 1 198.0 16.0 5.33 36.9 214.3 0.0 -4,-7 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000020088 Sar1a ENSMUST00000220372 ENSMUSP00000151339 TRANSLATION protein_coding stop - 2 131.0 9.0 3.58 0.0 156.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000020088 Sar1a ENSMUST00000218172 - NO_TRANSLATION retained_intron ENSMUSG00000036019 Tmtc2 ENSMUST00000147997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036019 Tmtc2 ENSMUST00000139741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036019 Tmtc2 ENSMUST00000133441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036019 Tmtc2 ENSMUST00000143691 - NO_TRANSLATION retained_intron ENSMUSG00000036019 Tmtc2 ENSMUST00000061506 ENSMUSP00000061919 TRANSLATION protein_coding - CCDS24157.1 1 836.0 0.0 5.85 21.2 212.3 0.0 0,-3 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036019 Tmtc2 ENSMUST00000130665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019970 Sgk1 ENSMUST00000120509 ENSMUSP00000114074 TRANSLATION protein_coding - CCDS48515.1 1 524.0 19.0 9.14 12.8 263.2 0.0 -4,-7 0.4648 1 15.18 MINOR ENSMUSG00000019970 Sgk1 ENSMUST00000142174 ENSMUSP00000120882 TRANSLATION protein_coding stop - 3 82.0 3.0 1.44 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000019970 Sgk1 ENSMUST00000124203 ENSMUSP00000116096 TRANSLATION protein_coding start/stop - 3 90.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019970 Sgk1 ENSMUST00000143094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019970 Sgk1 ENSMUST00000135195 - NO_TRANSLATION retained_intron ENSMUSG00000019970 Sgk1 ENSMUST00000020145 ENSMUSP00000020145 TRANSLATION protein_coding - CCDS23726.1 1 431.0 19.0 8.99 32.9 263.2 0.0 -4,-1 1.0 1 17.4 PRINCIPAL:4 ENSMUSG00000019970 Sgk1 ENSMUST00000092673 ENSMUSP00000090343 TRANSLATION protein_coding - CCDS48517.1 1 445.0 19.0 8.99 9.1 263.2 0.0 -4,-1 0.4629 1 14.416 MINOR ENSMUSG00000019970 Sgk1 ENSMUST00000141218 - NO_TRANSLATION retained_intron ENSMUSG00000019970 Sgk1 ENSMUST00000124350 ENSMUSP00000114691 TRANSLATION protein_coding stop - 3 266.0 19.0 6.19 0.0 207.4 0.0 -4,-7 0.0003 1 -2.0 MINOR ENSMUSG00000019970 Sgk1 ENSMUST00000150089 ENSMUSP00000115073 TRANSLATION protein_coding stop - 2 89.0 0.0 1.41 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000019970 Sgk1 ENSMUST00000126560 - NO_TRANSLATION retained_intron ENSMUSG00000019970 Sgk1 ENSMUST00000164659 ENSMUSP00000128873 TRANSLATION protein_coding - CCDS48518.1 5 404.0 19.0 8.99 13.9 263.2 0.0 -4,-7 0.7085 1 15.016 MINOR ENSMUSG00000019970 Sgk1 ENSMUST00000100036 ENSMUSP00000097614 TRANSLATION protein_coding - CCDS48516.1 5 417.0 19.0 9.29 22.2 263.2 0.0 -4,-6 0.9553 1 16.66 ALTERNATIVE:1 ENSMUSG00000019838 Slc16a10 ENSMUST00000217252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019838 Slc16a10 ENSMUST00000213488 ENSMUSP00000150416 TRANSLATION protein_coding - - 1 320.0 0.0 1.62534 0.0 45.9 12.0 -4,-5 0.0068 1 5.484 MINOR ENSMUSG00000019838 Slc16a10 ENSMUST00000092566 ENSMUSP00000090227 TRANSLATION protein_coding - CCDS48543.1 1 512.0 0.0 4.06 9.9 59.5 21.0 -4,-5 1.0 5 14.646 PRINCIPAL:1 ENSMUSG00000019838 Slc16a10 ENSMUST00000213827 ENSMUSP00000151126 TRANSLATION protein_coding start/stop - 3 184.0 0.0 2.5 0.0 63.2 9.0 0,-3 0.0447 2 -2.0 MINOR ENSMUSG00000020107 Anapc16 ENSMUST00000182925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020107 Anapc16 ENSMUST00000182898 ENSMUSP00000138112 TRANSLATION protein_coding - CCDS23869.1 1 110.0 0.0 1.75 14.4 0.0 0.0 -4,-1 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000020107 Anapc16 ENSMUST00000182912 ENSMUSP00000138384 TRANSLATION protein_coding - - 2 32.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0032 1 3.426 MINOR ENSMUSG00000020107 Anapc16 ENSMUST00000182116 ENSMUSP00000138227 TRANSLATION protein_coding - - 3 32.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0032 1 3.426 MINOR ENSMUSG00000020107 Anapc16 ENSMUST00000182152 ENSMUSP00000138579 TRANSLATION protein_coding - CCDS83700.1 2 129.0 0.0 1.75 0.4 0.0 0.0 -4,-6 0.2123 2 6.0 MINOR ENSMUSG00000020107 Anapc16 ENSMUST00000020307 ENSMUSP00000020307 TRANSLATION protein_coding - CCDS83700.1 2 129.0 0.0 1.75 0.4 0.0 0.0 -4,-6 0.2123 2 6.0 MINOR ENSMUSG00000020107 Anapc16 ENSMUST00000183093 - NO_TRANSLATION retained_intron ENSMUSG00000020107 Anapc16 ENSMUST00000183113 - NO_TRANSLATION retained_intron ENSMUSG00000005897 Nr2c1 ENSMUST00000099343 ENSMUSP00000096945 TRANSLATION protein_coding - CCDS24131.1 1 590.0 8.0 5.79 0.4 243.6 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000005897 Nr2c1 ENSMUST00000092213 ENSMUSP00000089858 TRANSLATION protein_coding - CCDS24131.1 5 590.0 8.0 5.79 0.4 243.6 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000005897 Nr2c1 ENSMUST00000105290 ENSMUSP00000100927 TRANSLATION protein_coding - CCDS24131.1 1 590.0 8.0 5.79 0.4 243.6 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000025350 Rdh5 ENSMUST00000137747 ENSMUSP00000116558 TRANSLATION protein_coding start/stop - 5 154.0 14.0 4.25 0.0 62.4 0.0 2,-1 0.0014 4 -2.0 MINOR ENSMUSG00000025350 Rdh5 ENSMUST00000139217 - NO_TRANSLATION retained_intron ENSMUSG00000025350 Rdh5 ENSMUST00000135161 ENSMUSP00000115182 TRANSLATION protein_coding stop - 5 107.0 5.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000025350 Rdh5 ENSMUST00000145616 ENSMUSP00000123358 TRANSLATION protein_coding stop - 2 175.0 20.0 4.5 0.0 88.8 0.0 2,-2 0.0015 3 -2.0 MINOR ENSMUSG00000025350 Rdh5 ENSMUST00000026406 ENSMUSP00000026406 TRANSLATION protein_coding - CCDS24298.1 1 318.0 28.0 8.75 10.0 128.5 0.0 2,-2 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000025350 Rdh5 ENSMUST00000153935 - NO_TRANSLATION retained_intron ENSMUSG00000025350 Rdh5 ENSMUST00000149961 ENSMUSP00000123183 TRANSLATION protein_coding stop - 3 144.0 20.0 4.0 0.0 104.5 0.0 -4,-5 0.0008 4 -2.0 MINOR ENSMUSG00000078453 Abracl ENSMUST00000220433 ENSMUSP00000151794 TRANSLATION protein_coding stop - 5 57.0 0.0 1.75 0.0 66.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000078453 Abracl ENSMUST00000218994 ENSMUSP00000151461 TRANSLATION protein_coding - CCDS48506.1 2 81.0 0.0 2.5 31.7 102.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000078453 Abracl ENSMUST00000020002 ENSMUSP00000020002 TRANSLATION protein_coding - CCDS48506.1 1 81.0 0.0 2.5 31.7 102.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000078453 Abracl ENSMUST00000220110 ENSMUSP00000151841 TRANSLATION protein_coding - CCDS48506.1 1 81.0 0.0 2.5 31.7 102.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000078453 Abracl ENSMUST00000217718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020064 Herc4 ENSMUST00000219856 - NO_TRANSLATION retained_intron ENSMUSG00000020064 Herc4 ENSMUST00000219177 - NO_TRANSLATION retained_intron ENSMUSG00000020064 Herc4 ENSMUST00000219577 ENSMUSP00000151886 TRANSLATION protein_coding - - 1 1057.0 0.0 12.469 25.8 612.6 0.0 -4,-5 0.8702 24 12.0 ALTERNATIVE:1 ENSMUSG00000020064 Herc4 ENSMUST00000218533 ENSMUSP00000151505 TRANSLATION nonsense_mediated_decay - - 3 79.0 0.0 0.6 0.0 68.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020064 Herc4 ENSMUST00000219789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020064 Herc4 ENSMUST00000220097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020064 Herc4 ENSMUST00000219230 - NO_TRANSLATION retained_intron ENSMUSG00000020064 Herc4 ENSMUST00000219002 - NO_TRANSLATION retained_intron ENSMUSG00000020064 Herc4 ENSMUST00000219279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020064 Herc4 ENSMUST00000218073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020064 Herc4 ENSMUST00000020258 ENSMUSP00000020258 TRANSLATION protein_coding - CCDS23897.1 1 1049.0 0.0 12.304 25.8 612.6 0.0 -4,-5 1.0 24 11.67 PRINCIPAL:4 ENSMUSG00000112380 Gm9736 ENSMUST00000219969 ENSMUSP00000151736 TRANSLATION protein_coding - - - 277.0 0.0 0.0 0.0 54.9 0.0 -4,-5 0.7175 - 6.0 PRINCIPAL:1 ENSMUSG00000097427 Gm6763 ENSMUST00000181287 ENSMUSP00000137957 TRANSLATION protein_coding - - 2 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000097427 Gm6763 ENSMUST00000180692 ENSMUSP00000137740 TRANSLATION protein_coding - - 3 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000019982 Myb ENSMUST00000216751 - NO_TRANSLATION retained_intron ENSMUSG00000019982 Myb ENSMUST00000020158 ENSMUSP00000020158 TRANSLATION protein_coding - CCDS35861.1 1 636.0 0.0 4.65 16.4 491.7 0.0 -4,-5 1.0 1 15.376 PRINCIPAL:1 ENSMUSG00000019982 Myb ENSMUST00000214539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019982 Myb ENSMUST00000186446 - NO_TRANSLATION retained_intron ENSMUSG00000019982 Myb ENSMUST00000188495 ENSMUSP00000139699 TRANSLATION protein_coding - CCDS78800.1 1 755.0 0.0 4.65 5.6 502.1 0.0 -4,-5 0.5828 1 13.196 MINOR ENSMUSG00000019982 Myb ENSMUST00000216985 - NO_TRANSLATION retained_intron ENSMUSG00000095647 Taar7a ENSMUST00000078532 ENSMUSP00000077616 TRANSLATION protein_coding - CCDS23740.1 - 358.0 0.0 1.0 0.4 190.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020150 Gamt ENSMUST00000148615 - NO_TRANSLATION retained_intron ENSMUSG00000020150 Gamt ENSMUST00000144798 - NO_TRANSLATION retained_intron ENSMUSG00000020150 Gamt ENSMUST00000020359 ENSMUSP00000020359 TRANSLATION protein_coding - CCDS83728.1 1 252.0 20.0 5.0 1.1 0.0 0.0 -4,-5 0.0873 6 11.01 MINOR ENSMUSG00000020150 Gamt ENSMUST00000105363 ENSMUSP00000101002 TRANSLATION protein_coding - CCDS35976.1 1 236.0 20.0 5.5 31.5 0.0 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000058513 Or6c211 ENSMUST00000213294 ENSMUSP00000148943 TRANSLATION protein_coding - CCDS24328.1 5 318.0 0.0 3.0 6.7 174.3 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058513 Or6c211 ENSMUST00000203424 ENSMUSP00000145011 TRANSLATION protein_coding stop - 5 96.0 0.0 1.0 0.0 65.4 3.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000058513 Or6c211 ENSMUST00000072063 ENSMUSP00000071941 TRANSLATION protein_coding - CCDS24328.1 - 318.0 0.0 3.0 6.7 174.3 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058513 Or6c211 ENSMUST00000216067 ENSMUSP00000149555 TRANSLATION protein_coding - CCDS24328.1 5 318.0 0.0 3.0 6.7 174.3 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063320 Uqcc6 ENSMUST00000079648 ENSMUSP00000078593 TRANSLATION protein_coding - CCDS48653.1 1 67.0 0.0 2.0 17.0 89.4 0.0 0,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000063320 Uqcc6 ENSMUST00000183416 ENSMUSP00000139041 TRANSLATION protein_coding - - 2 75.0 0.0 1.0 0.0 69.9 0.0 0,-3 0.0034 - 7.692 MINOR ENSMUSG00000063320 Uqcc6 ENSMUST00000176200 ENSMUSP00000134868 TRANSLATION protein_coding - CCDS48653.1 2 67.0 0.0 2.0 17.0 89.4 0.0 0,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000063320 Uqcc6 ENSMUST00000185168 ENSMUSP00000139244 TRANSLATION protein_coding - CCDS48653.1 2 67.0 0.0 2.0 17.0 89.4 0.0 0,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000063320 Uqcc6 ENSMUST00000183363 ENSMUSP00000139234 TRANSLATION protein_coding - CCDS48653.1 1 67.0 0.0 2.0 17.0 89.4 0.0 0,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000020056 Washc3 ENSMUST00000182299 ENSMUSP00000138261 TRANSLATION nonsense_mediated_decay - - 3 50.0 0.0 1.0 0.0 32.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020056 Washc3 ENSMUST00000171151 ENSMUSP00000132246 TRANSLATION protein_coding - CCDS48664.1 1 179.0 0.0 2.35 0.0 118.7 0.0 -4,-5 0.0856 2 9.288 MINOR ENSMUSG00000020056 Washc3 ENSMUST00000182619 ENSMUSP00000138310 TRANSLATION protein_coding start - 5 171.0 0.0 2.35 0.0 117.4 0.0 -4,-6 0.0172 2 -2.0 MINOR ENSMUSG00000020056 Washc3 ENSMUST00000020248 ENSMUSP00000020248 TRANSLATION protein_coding - CCDS24108.1 1 194.0 0.0 2.35 2.0 163.9 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000020056 Washc3 ENSMUST00000182183 ENSMUSP00000138540 TRANSLATION protein_coding - CCDS59550.1 2 193.0 0.0 2.35 0.0 162.0 0.0 -4,-5 0.3855 3 11.886 MINOR ENSMUSG00000020056 Washc3 ENSMUST00000182359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020056 Washc3 ENSMUST00000182351 - NO_TRANSLATION retained_intron ENSMUSG00000020056 Washc3 ENSMUST00000182211 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002578 Ikzf4 ENSMUST00000223162 ENSMUSP00000152663 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000002578 Ikzf4 ENSMUST00000238712 ENSMUSP00000158614 TRANSLATION protein_coding - - - 539.0 16.0 2.7 9.4 62.6 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:4 ENSMUSG00000002578 Ikzf4 ENSMUST00000221022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002578 Ikzf4 ENSMUST00000222067 ENSMUSP00000152234 TRANSLATION protein_coding - - 1 533.0 16.0 2.7 2.7 62.6 0.0 -4,-5 0.4144 - 14.606 MINOR ENSMUSG00000002578 Ikzf4 ENSMUST00000133342 ENSMUSP00000114404 TRANSLATION protein_coding - CCDS24284.2 2 586.0 16.0 2.7 8.2 62.6 0.0 -4,-7 0.9813 - 16.571 ALTERNATIVE:1 ENSMUSG00000002578 Ikzf4 ENSMUST00000223145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002578 Ikzf4 ENSMUST00000221150 ENSMUSP00000152617 TRANSLATION protein_coding - - 1 686.0 16.0 2.5 0.0 62.6 0.0 -4,-7 0.0315 - 13.556 MINOR ENSMUSG00000002578 Ikzf4 ENSMUST00000222899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002578 Ikzf4 ENSMUST00000222901 ENSMUSP00000152758 TRANSLATION nonsense_mediated_decay start - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000002578 Ikzf4 ENSMUST00000238610 ENSMUSP00000158702 TRANSLATION protein_coding - - - 539.0 16.0 2.7 9.4 62.6 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:4 ENSMUSG00000025366 Esyt1 ENSMUST00000026427 ENSMUSP00000026427 TRANSLATION protein_coding - CCDS24280.1 1 1092.0 10.0 15.8805 0.4 579.9 0.0 -4,-5 1.0 39 18.0 PRINCIPAL:1 ENSMUSG00000025366 Esyt1 ENSMUST00000217948 - NO_TRANSLATION retained_intron ENSMUSG00000025366 Esyt1 ENSMUST00000220045 - NO_TRANSLATION retained_intron ENSMUSG00000025366 Esyt1 ENSMUST00000220429 ENSMUSP00000151519 TRANSLATION nonsense_mediated_decay start - 1 528.0 6.0 5.715 0.0 161.9 0.0 -4,-5 0.0 19 -2.0 MINOR ENSMUSG00000025366 Esyt1 ENSMUST00000218092 - NO_TRANSLATION retained_intron ENSMUSG00000055053 Nfic ENSMUST00000020461 ENSMUSP00000020461 TRANSLATION protein_coding - CCDS24058.1 1 439.0 0.0 1.3 12.7 496.2 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000055053 Nfic ENSMUST00000152670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055053 Nfic ENSMUST00000117966 ENSMUSP00000113046 TRANSLATION protein_coding - - 1 430.0 0.0 1.3 6.5 491.3 0.0 -4,-6 0.6319 8 13.116 MINOR ENSMUSG00000055053 Nfic ENSMUST00000221817 ENSMUSP00000152790 TRANSLATION protein_coding - - 5 461.0 0.0 1.3 0.0 491.3 0.0 -4,-6 0.083 8 11.706 MINOR ENSMUSG00000055053 Nfic ENSMUST00000140916 ENSMUSP00000114469 TRANSLATION protein_coding start - 3 96.0 0.0 0.0 0.0 94.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055053 Nfic ENSMUST00000105321 ENSMUSP00000100958 TRANSLATION protein_coding - CCDS35999.1 1 428.0 0.0 1.3 7.7 494.3 0.0 -4,-5 0.8504 8 13.605 MINOR ENSMUSG00000055053 Nfic ENSMUST00000078185 ENSMUSP00000077317 TRANSLATION protein_coding - - 5 397.0 0.0 1.3 0.0 320.1 0.0 -4,-5 0.0201 5 6.0 MINOR ENSMUSG00000020277 Pfkl ENSMUST00000218921 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020277 Pfkl ENSMUST00000145716 ENSMUSP00000151752 TRANSLATION protein_coding stop - 5 167.0 21.0 3.83 0.0 172.3 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000020277 Pfkl ENSMUST00000220064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020277 Pfkl ENSMUST00000220304 - NO_TRANSLATION retained_intron ENSMUSG00000020277 Pfkl ENSMUST00000148818 - NO_TRANSLATION retained_intron ENSMUSG00000020277 Pfkl ENSMUST00000020522 ENSMUSP00000020522 TRANSLATION protein_coding - CCDS35955.1 1 780.0 45.0 19.83 19.4 688.3 0.0 -4,-5 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000020277 Pfkl ENSMUST00000218383 ENSMUSP00000151375 TRANSLATION nonsense_mediated_decay - - 3 64.0 3.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020277 Pfkl ENSMUST00000149271 - NO_TRANSLATION retained_intron ENSMUSG00000005054 Cstb ENSMUST00000005185 ENSMUSP00000005185 TRANSLATION protein_coding - CCDS23964.1 1 98.0 0.0 2.75 25.7 78.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000025417 Pip4k2c ENSMUST00000218386 - NO_TRANSLATION retained_intron ENSMUSG00000025417 Pip4k2c ENSMUST00000013970 ENSMUSP00000013970 TRANSLATION protein_coding - CCDS24232.1 1 421.0 4.0 7.05 7.5 233.7 0.0 -4,-6 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000020167 Tcf3 ENSMUST00000156990 ENSMUSP00000121172 TRANSLATION protein_coding start - 5 638.0 0.0 2.3 0.0 39.2 0.0 -4,-5 0.1176 6 -2.0 MINOR ENSMUSG00000020167 Tcf3 ENSMUST00000127931 - NO_TRANSLATION retained_intron ENSMUSG00000020167 Tcf3 ENSMUST00000129027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020167 Tcf3 ENSMUST00000020379 ENSMUSP00000020379 TRANSLATION protein_coding - CCDS48632.1 1 649.0 0.0 2.63 1.1 39.2 0.0 -4,-5 0.7443 6 9.0 ALTERNATIVE:2 ENSMUSG00000020167 Tcf3 ENSMUST00000105343 ENSMUSP00000100980 TRANSLATION protein_coding - CCDS48633.1 1 649.0 0.0 2.63 1.1 39.2 0.0 -4,-5 0.6338 6 9.0 ALTERNATIVE:2 ENSMUSG00000020167 Tcf3 ENSMUST00000105339 ENSMUSP00000100976 TRANSLATION protein_coding - - 5 648.0 0.0 2.63 0.4 39.1 0.0 -4,-5 0.224 6 8.0 ALTERNATIVE:2 ENSMUSG00000020167 Tcf3 ENSMUST00000105341 ENSMUSP00000100978 TRANSLATION protein_coding - - 5 645.0 0.0 2.63 0.4 39.2 0.0 -4,-5 0.1917 6 8.0 ALTERNATIVE:2 ENSMUSG00000020167 Tcf3 ENSMUST00000105344 ENSMUSP00000100981 TRANSLATION protein_coding - CCDS48635.1 1 650.0 0.0 2.63 0.4 39.2 0.0 -4,-5 1.0 6 8.0 PRINCIPAL:4 ENSMUSG00000020167 Tcf3 ENSMUST00000105346 ENSMUSP00000100983 TRANSLATION protein_coding - CCDS48630.1 1 651.0 0.0 2.63 1.1 39.1 0.0 -4,-5 0.9389 6 9.0 ALTERNATIVE:2 ENSMUSG00000020167 Tcf3 ENSMUST00000020377 ENSMUSP00000020377 TRANSLATION protein_coding - CCDS48634.1 5 652.0 0.0 2.63 1.1 39.1 0.0 -4,-5 0.8467 6 9.0 ALTERNATIVE:2 ENSMUSG00000020167 Tcf3 ENSMUST00000156244 ENSMUSP00000120303 TRANSLATION protein_coding stop - 5 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000020167 Tcf3 ENSMUST00000105345 ENSMUSP00000100982 TRANSLATION protein_coding - CCDS24022.1 1 648.0 0.0 2.63 1.1 39.2 0.0 -4,-5 0.5989 6 9.0 ALTERNATIVE:2 ENSMUSG00000020167 Tcf3 ENSMUST00000105340 ENSMUSP00000100977 TRANSLATION protein_coding - CCDS48631.1 1 648.0 0.0 2.63 1.1 39.2 0.0 -4,-5 0.7121 6 9.0 ALTERNATIVE:2 ENSMUSG00000020167 Tcf3 ENSMUST00000105342 ENSMUSP00000100979 TRANSLATION protein_coding - CCDS48636.1 1 653.0 0.0 2.63 0.4 39.1 0.0 -4,-5 0.5547 6 8.0 ALTERNATIVE:2 ENSMUSG00000004937 Sgta ENSMUST00000219401 ENSMUSP00000151345 TRANSLATION protein_coding stop - 2 211.0 0.0 5.6 0.0 164.1 0.0 -4,-7 0.0044 8 -2.0 MINOR ENSMUSG00000004937 Sgta ENSMUST00000220202 - NO_TRANSLATION retained_intron ENSMUSG00000004937 Sgta ENSMUST00000219126 - NO_TRANSLATION retained_intron ENSMUSG00000004937 Sgta ENSMUST00000005067 ENSMUSP00000005067 TRANSLATION protein_coding - CCDS35990.1 1 315.0 0.0 6.15 19.3 164.1 0.0 -4,-7 1.0 9 12.0 PRINCIPAL:3 ENSMUSG00000004937 Sgta ENSMUST00000219297 - NO_TRANSLATION retained_intron ENSMUSG00000004937 Sgta ENSMUST00000220317 ENSMUSP00000151678 TRANSLATION protein_coding stop - 3 166.0 0.0 4.8 0.0 123.0 0.0 -4,-7 0.0009 6 -2.0 MINOR ENSMUSG00000004937 Sgta ENSMUST00000218208 ENSMUSP00000151949 TRANSLATION protein_coding - - 1 314.0 0.0 5.95 19.3 164.1 0.0 -4,-7 0.8513 8 11.598 ALTERNATIVE:1 ENSMUSG00000034560 Washc4 ENSMUST00000219582 - NO_TRANSLATION retained_intron ENSMUSG00000034560 Washc4 ENSMUST00000038388 ENSMUSP00000039322 TRANSLATION protein_coding - CCDS36015.1 5 1173.0 0.0 0.0 20.8 1622.2 0.0 -4,-5 1.0 16 10.0 PRINCIPAL:1 ENSMUSG00000034560 Washc4 ENSMUST00000217842 ENSMUSP00000151417 TRANSLATION nonsense_mediated_decay - - 1 187.0 0.0 0.0 0.0 211.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034560 Washc4 ENSMUST00000218570 - NO_TRANSLATION retained_intron ENSMUSG00000019809 Pex3 ENSMUST00000125207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019809 Pex3 ENSMUST00000105541 ENSMUSP00000101180 TRANSLATION protein_coding - - 1 293.0 0.0 5.2 0.0 0.0 0.0 -4,-7 0.0108 6 2.502 MINOR ENSMUSG00000019809 Pex3 ENSMUST00000170376 ENSMUSP00000128512 TRANSLATION protein_coding - CCDS48503.1 1 359.0 0.0 6.2 0.0 0.0 0.0 -4,-7 0.122 8 4.5 MINOR ENSMUSG00000019809 Pex3 ENSMUST00000145337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019809 Pex3 ENSMUST00000019945 ENSMUSP00000019945 TRANSLATION protein_coding - CCDS23702.1 1 372.0 0.0 6.95 23.2 0.0 0.0 -4,-7 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000019809 Pex3 ENSMUST00000105539 ENSMUSP00000101178 TRANSLATION protein_coding - CCDS83681.1 1 306.0 0.0 5.95 7.5 0.0 0.0 -4,-7 0.3181 6 5.174 MINOR ENSMUSG00000019809 Pex3 ENSMUST00000133332 - NO_TRANSLATION retained_intron ENSMUSG00000000435 Myf5 ENSMUST00000000445 ENSMUSP00000000445 TRANSLATION protein_coding - CCDS24161.1 1 255.0 0.0 0.6 18.9 226.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038122 Tbc1d32 ENSMUST00000099739 ENSMUSP00000097328 TRANSLATION protein_coding - CCDS48562.1 5 1296.0 0.0 0.0 11.1 2339.0 0.0 -4,-5 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000038122 Tbc1d32 ENSMUST00000217792 - NO_TRANSLATION retained_intron ENSMUSG00000038122 Tbc1d32 ENSMUST00000219385 - NO_TRANSLATION retained_intron ENSMUSG00000035781 R3hdm4 ENSMUST00000217976 ENSMUSP00000151403 TRANSLATION nonsense_mediated_decay - - 2 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035781 R3hdm4 ENSMUST00000219358 - NO_TRANSLATION retained_intron ENSMUSG00000035781 R3hdm4 ENSMUST00000219867 ENSMUSP00000151679 TRANSLATION protein_coding stop - 3 28.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035781 R3hdm4 ENSMUST00000218750 ENSMUSP00000151535 TRANSLATION protein_coding stop - 3 122.0 0.0 0.0 0.0 85.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035781 R3hdm4 ENSMUST00000219206 - NO_TRANSLATION retained_intron ENSMUSG00000035781 R3hdm4 ENSMUST00000218970 ENSMUSP00000151887 TRANSLATION nonsense_mediated_decay - - 2 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035781 R3hdm4 ENSMUST00000045628 ENSMUSP00000044570 TRANSLATION protein_coding - CCDS23997.1 1 262.0 0.0 0.0 5.8 149.6 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000019773 Fbxo5 ENSMUST00000142200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019773 Fbxo5 ENSMUST00000019907 ENSMUSP00000019907 TRANSLATION protein_coding - CCDS56683.1 1 421.0 8.0 1.0 0.4 23.5 0.0 -4,-1 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000006344 Ggt5 ENSMUST00000219214 - NO_TRANSLATION retained_intron ENSMUSG00000006344 Ggt5 ENSMUST00000218807 ENSMUSP00000151283 TRANSLATION nonsense_mediated_decay - - 1 230.0 0.0 4.2 0.0 159.2 0.0 1,-4 0.0012 4 -2.0 MINOR ENSMUSG00000006344 Ggt5 ENSMUST00000189991 ENSMUSP00000141106 TRANSLATION protein_coding start - 3 205.0 0.0 4.0 0.0 159.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000006344 Ggt5 ENSMUST00000219247 - NO_TRANSLATION retained_intron ENSMUSG00000006344 Ggt5 ENSMUST00000189972 ENSMUSP00000139459 TRANSLATION protein_coding - - 3 71.0 0.0 1.0 0.0 0.0 0.0 1,-4 0.0016 1 0.0 MINOR ENSMUSG00000006344 Ggt5 ENSMUST00000188444 - NO_TRANSLATION retained_intron ENSMUSG00000006344 Ggt5 ENSMUST00000072217 ENSMUSP00000072074 TRANSLATION protein_coding - CCDS23928.1 1 573.0 12.0 10.32 5.6 539.8 0.0 1,-4 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000019853 Hebp2 ENSMUST00000213153 ENSMUSP00000150459 TRANSLATION protein_coding - - 1 116.0 0.0 2.35 1.0 63.1 0.0 -4,-5 0.0085 1 2.112 MINOR ENSMUSG00000019853 Hebp2 ENSMUST00000214548 ENSMUSP00000149513 TRANSLATION protein_coding - - 1 140.0 0.0 3.35 0.0 96.5 0.0 -4,-5 0.0 2 6.114 MINOR ENSMUSG00000019853 Hebp2 ENSMUST00000020000 ENSMUSP00000020000 TRANSLATION protein_coding - CCDS23711.1 1 205.0 0.0 4.85 9.2 144.6 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000069515 Lyz1 ENSMUST00000092162 ENSMUSP00000089800 TRANSLATION protein_coding - CCDS48695.1 1 148.0 21.0 3.5 19.6 190.8 0.0 3,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000098188 Sowahc ENSMUST00000182161 ENSMUSP00000138351 TRANSLATION protein_coding - CCDS59544.1 - 512.0 0.0 0.0 0.0 49.0 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000020317 Theg ENSMUST00000077433 ENSMUSP00000076647 TRANSLATION protein_coding - CCDS23978.1 1 351.0 0.0 0.0 0.4 145.4 0.0 -4,-5 0.1922 3 2.0 ALTERNATIVE:2 ENSMUSG00000020317 Theg ENSMUST00000020566 ENSMUSP00000020566 TRANSLATION protein_coding - CCDS23977.1 1 375.0 0.0 0.0 0.4 145.5 0.0 -4,-5 1.0 3 2.0 PRINCIPAL:2 ENSMUSG00000020317 Theg ENSMUST00000159782 - NO_TRANSLATION retained_intron ENSMUSG00000035529 Prdm4 ENSMUST00000218969 ENSMUSP00000151593 TRANSLATION protein_coding stop - 2 153.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035529 Prdm4 ENSMUST00000220032 ENSMUSP00000151931 TRANSLATION protein_coding - CCDS24093.1 5 803.0 27.0 4.07 1.3 48.3 0.0 -4,-6 0.4309 - 17.474 MINOR ENSMUSG00000035529 Prdm4 ENSMUST00000218289 - NO_TRANSLATION retained_intron ENSMUSG00000035529 Prdm4 ENSMUST00000219112 - NO_TRANSLATION retained_intron ENSMUSG00000035529 Prdm4 ENSMUST00000219370 ENSMUSP00000151513 TRANSLATION nonsense_mediated_decay - - 1 120.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035529 Prdm4 ENSMUST00000037646 ENSMUSP00000041942 TRANSLATION protein_coding - - 1 796.0 27.0 4.4 5.5 48.3 0.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000035529 Prdm4 ENSMUST00000218743 - NO_TRANSLATION retained_intron ENSMUSG00000095171 Taar7b ENSMUST00000092658 ENSMUSP00000090328 TRANSLATION protein_coding - CCDS23741.1 - 358.0 0.0 1.0 0.4 192.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091888 Vmn2r80 ENSMUST00000165834 ENSMUSP00000132299 TRANSLATION protein_coding - CCDS48616.1 5 863.0 4.0 2.9 0.0 370.3 0.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000019867 Gje1 ENSMUST00000020016 ENSMUSP00000020016 TRANSLATION protein_coding - CCDS48505.1 1 205.0 0.0 2.3 18.3 111.3 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037855 Zfp365 ENSMUST00000064656 ENSMUSP00000067197 TRANSLATION protein_coding - CCDS23903.1 1 408.0 4.0 0.0 12.5 0.0 0.0 -4,-5 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000037855 Zfp365 ENSMUST00000132870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037855 Zfp365 ENSMUST00000138543 - NO_TRANSLATION retained_intron ENSMUSG00000037855 Zfp365 ENSMUST00000127869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000374 Trappc10 ENSMUST00000217980 ENSMUSP00000151489 TRANSLATION nonsense_mediated_decay - - 5 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000374 Trappc10 ENSMUST00000219948 - NO_TRANSLATION retained_intron ENSMUSG00000000374 Trappc10 ENSMUST00000217858 ENSMUSP00000152048 TRANSLATION nonsense_mediated_decay start - 5 181.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000000374 Trappc10 ENSMUST00000218124 - NO_TRANSLATION retained_intron ENSMUSG00000000374 Trappc10 ENSMUST00000000384 ENSMUSP00000000384 TRANSLATION protein_coding - CCDS35959.1 1 1258.0 0.0 0.0 8.1 142.4 0.0 -4,-5 1.0 25 9.0 PRINCIPAL:1 ENSMUSG00000112023 Lilrb4b ENSMUST00000219262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000112023 Lilrb4b ENSMUST00000218649 - NO_TRANSLATION retained_intron ENSMUSG00000112023 Lilrb4b ENSMUST00000219960 ENSMUSP00000151563 TRANSLATION nonsense_mediated_decay - - 1 39.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000112023 Lilrb4b ENSMUST00000219717 - NO_TRANSLATION retained_intron ENSMUSG00000112023 Lilrb4b ENSMUST00000219598 - NO_TRANSLATION retained_intron ENSMUSG00000112023 Lilrb4b ENSMUST00000219053 - NO_TRANSLATION retained_intron ENSMUSG00000112023 Lilrb4b ENSMUST00000219151 - NO_TRANSLATION retained_intron ENSMUSG00000112023 Lilrb4b ENSMUST00000218179 - NO_TRANSLATION retained_intron ENSMUSG00000112023 Lilrb4b ENSMUST00000219178 - NO_TRANSLATION retained_intron ENSMUSG00000112023 Lilrb4b ENSMUST00000219661 ENSMUSP00000151625 TRANSLATION protein_coding - - 1 208.0 0.0 2.9 0.0 31.6 1.0 2,-2 0.0504 - 9.0 MINOR ENSMUSG00000112023 Lilrb4b ENSMUST00000218704 ENSMUSP00000151407 TRANSLATION nonsense_mediated_decay - - 5 73.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000112023 Lilrb4b ENSMUST00000102894 ENSMUSP00000099958 TRANSLATION protein_coding - CCDS23831.1 1 303.0 0.0 4.4 0.0 31.6 1.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000112023 Lilrb4b ENSMUST00000218900 - NO_TRANSLATION retained_intron ENSMUSG00000047090 Tmem198b ENSMUST00000139227 ENSMUSP00000118082 TRANSLATION nonsense_mediated_decay - - 5 96.0 0.0 0.5 0.0 53.6 2.0 -4,-7 0.0027 - -2.0 MINOR ENSMUSG00000047090 Tmem198b ENSMUST00000152966 - NO_TRANSLATION retained_intron ENSMUSG00000047090 Tmem198b ENSMUST00000051011 ENSMUSP00000050451 TRANSLATION protein_coding - CCDS24293.1 1 350.0 0.0 0.6 4.1 148.8 5.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000035370 Gm49322 ENSMUST00000219462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035370 Gm49322 ENSMUST00000218067 ENSMUSP00000151394 TRANSLATION nonsense_mediated_decay,RT - CCDS48637.1 2 349.0 4.0 0.08 5.3 54.5 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000035370 Gm49322 ENSMUST00000178231 ENSMUSP00000136259 TRANSLATION protein_coding - CCDS48637.1 2 349.0 4.0 0.08 5.3 54.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000035189 Ano4 ENSMUST00000182790 ENSMUSP00000138325 TRANSLATION protein_coding - - 5 920.0 0.0 14.91 13.7 798.4 7.0 -4,-5 0.9255 6 12.0 ALTERNATIVE:1 ENSMUSG00000035189 Ano4 ENSMUST00000182341 ENSMUSP00000138193 TRANSLATION protein_coding - CCDS24114.2 5 955.0 0.0 14.91 12.2 798.4 7.0 -4,-5 1.0 6 11.528 PRINCIPAL:4 ENSMUSG00000035189 Ano4 ENSMUST00000180843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035189 Ano4 ENSMUST00000182419 ENSMUSP00000138435 TRANSLATION nonsense_mediated_decay - - 5 356.0 0.0 1.8 0.0 90.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035189 Ano4 ENSMUST00000183268 ENSMUSP00000138627 TRANSLATION nonsense_mediated_decay - - 1 190.0 0.0 1.8 0.0 90.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035189 Ano4 ENSMUST00000182624 ENSMUSP00000138525 TRANSLATION protein_coding stop - 5 284.0 0.0 0.8 0.0 38.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035189 Ano4 ENSMUST00000182462 ENSMUSP00000138440 TRANSLATION nonsense_mediated_decay - - 1 155.0 0.0 1.8 0.0 90.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035189 Ano4 ENSMUST00000182888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035189 Ano4 ENSMUST00000182041 - NO_TRANSLATION retained_intron ENSMUSG00000035189 Ano4 ENSMUST00000182598 ENSMUSP00000138174 TRANSLATION protein_coding start/stop - 5 149.0 0.0 3.35 0.0 99.3 2.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000035189 Ano4 ENSMUST00000181976 ENSMUSP00000138792 TRANSLATION protein_coding - - 1 245.0 0.0 1.8 0.0 113.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000035189 Ano4 ENSMUST00000182613 ENSMUSP00000138268 TRANSLATION protein_coding - - 5 920.0 0.0 14.91 13.7 798.4 7.0 -4,-5 0.9255 6 12.0 ALTERNATIVE:1 ENSMUSG00000112611 Glipr1l3 ENSMUST00000220085 ENSMUSP00000151818 TRANSLATION protein_coding - - 5 236.0 0.0 4.05 0.4 87.7 0.0 2,-2 0.8102 1 12.0 PRINCIPAL:1 ENSMUSG00000097550 Gm21304 ENSMUST00000180568 ENSMUSP00000137929 TRANSLATION protein_coding - - 3 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000097550 Gm21304 ENSMUST00000181059 ENSMUSP00000137711 TRANSLATION protein_coding - - 2 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000046807 Lrrc75b ENSMUST00000220172 ENSMUSP00000151527 TRANSLATION protein_coding start - 2 163.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0055 - -2.0 MINOR ENSMUSG00000046807 Lrrc75b ENSMUST00000051129 ENSMUSP00000053085 TRANSLATION protein_coding - CCDS35937.1 1 306.0 0.0 1.4 2.8 0.0 0.0 -4,0 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000034881 Tbxa2r ENSMUST00000105325 ENSMUSP00000100962 TRANSLATION protein_coding - CCDS24053.1 1 341.0 0.0 1.6 0.4 79.4 6.0 -3,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000034881 Tbxa2r ENSMUST00000220312 ENSMUSP00000151447 TRANSLATION protein_coding - CCDS24053.1 1 341.0 0.0 1.6 0.4 79.4 6.0 -3,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000039760 Il22ra2 ENSMUST00000036564 ENSMUSP00000042642 TRANSLATION protein_coding - CCDS23717.1 1 230.0 0.0 2.6 10.7 203.1 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046031 Calhm6 ENSMUST00000062784 ENSMUSP00000051575 TRANSLATION protein_coding - CCDS23775.1 1 313.0 0.0 1.64 9.4 306.2 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000025432 Avil ENSMUST00000126816 ENSMUSP00000115018 TRANSLATION protein_coding stop - 5 78.0 3.0 2.205 0.0 45.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025432 Avil ENSMUST00000026500 ENSMUSP00000026500 TRANSLATION protein_coding - CCDS24221.1 1 819.0 22.0 15.405 15.4 374.3 0.0 -4,-7 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000025432 Avil ENSMUST00000142698 ENSMUSP00000117667 TRANSLATION protein_coding stop - 5 54.0 2.0 1.455 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025432 Avil ENSMUST00000129173 ENSMUSP00000123405 TRANSLATION protein_coding - CCDS24221.1 5 819.0 22.0 15.405 15.4 374.3 0.0 -4,-7 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000020211 Sf3a2 ENSMUST00000147440 ENSMUSP00000116478 TRANSLATION protein_coding stop - 5 67.0 2.0 1.75 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000020211 Sf3a2 ENSMUST00000148665 ENSMUSP00000117160 TRANSLATION protein_coding - CCDS35986.2 1 485.0 4.0 4.88 0.0 160.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000020211 Sf3a2 ENSMUST00000151928 ENSMUSP00000114164 TRANSLATION protein_coding - - 5 194.0 4.0 4.05 0.0 126.6 0.0 -4,-5 0.0 6 12.304 MINOR ENSMUSG00000020211 Sf3a2 ENSMUST00000139461 - NO_TRANSLATION retained_intron ENSMUSG00000044624 Gm4922 ENSMUST00000055107 ENSMUSP00000055273 TRANSLATION protein_coding - CCDS48509.1 3 497.0 3.0 0.4 0.0 210.0 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000044624 Gm4922 ENSMUST00000216654 ENSMUSP00000149756 TRANSLATION protein_coding - CCDS48509.1 1 497.0 3.0 0.4 0.0 210.0 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000019467 Arhgef25 ENSMUST00000219428 - NO_TRANSLATION retained_intron ENSMUSG00000019467 Arhgef25 ENSMUST00000219587 - NO_TRANSLATION retained_intron ENSMUSG00000019467 Arhgef25 ENSMUST00000218478 - NO_TRANSLATION retained_intron ENSMUSG00000019467 Arhgef25 ENSMUST00000167353 ENSMUSP00000126339 TRANSLATION protein_coding - CCDS48715.1 1 609.0 0.0 9.1 0.1 134.9 0.0 -4,-6 0.2913 10 12.0 MINOR ENSMUSG00000019467 Arhgef25 ENSMUST00000219245 ENSMUSP00000151876 TRANSLATION protein_coding stop - 3 23.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019467 Arhgef25 ENSMUST00000222006 ENSMUSP00000152503 TRANSLATION protein_coding - - 5 584.0 0.0 8.1 0.1 134.9 0.0 -4,-6 0.1842 9 10.002 MINOR ENSMUSG00000019467 Arhgef25 ENSMUST00000218654 ENSMUSP00000151325 TRANSLATION protein_coding - - 5 579.0 0.0 9.1 7.7 134.9 0.0 -4,-2 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000019467 Arhgef25 ENSMUST00000218864 ENSMUSP00000151801 TRANSLATION nonsense_mediated_decay start - 3 102.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019467 Arhgef25 ENSMUST00000220295 - NO_TRANSLATION retained_intron ENSMUSG00000019467 Arhgef25 ENSMUST00000219649 - NO_TRANSLATION retained_intron ENSMUSG00000019467 Arhgef25 ENSMUST00000218587 ENSMUSP00000151492 TRANSLATION nonsense_mediated_decay - - 5 100.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019467 Arhgef25 ENSMUST00000019611 ENSMUSP00000019611 TRANSLATION protein_coding - CCDS24231.1 1 618.0 0.0 9.1 0.0 134.9 0.0 -4,-6 0.1823 11 12.0 MINOR ENSMUSG00000069708 Taar3 ENSMUST00000045152 ENSMUSP00000036817 TRANSLATION protein_coding - CCDS23736.1 - 343.0 0.0 1.0 9.4 175.0 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061589 Dot1l ENSMUST00000138505 ENSMUSP00000119492 TRANSLATION protein_coding start - 1 234.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.001 - -2.0 MINOR ENSMUSG00000061589 Dot1l ENSMUST00000147579 - NO_TRANSLATION retained_intron ENSMUSG00000061589 Dot1l ENSMUST00000150338 ENSMUSP00000116581 TRANSLATION protein_coding start - 1 1202.0 3.0 8.3 0.0 117.2 0.0 -4,-5 0.0197 10 -2.0 MINOR ENSMUSG00000061589 Dot1l ENSMUST00000105336 ENSMUSP00000100973 TRANSLATION protein_coding - CCDS35985.1 1 1540.0 10.0 14.13 0.4 276.4 0.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000061589 Dot1l ENSMUST00000127740 ENSMUSP00000130408 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061589 Dot1l ENSMUST00000163526 - NO_TRANSLATION retained_intron ENSMUSG00000061589 Dot1l ENSMUST00000149394 ENSMUSP00000127762 TRANSLATION nonsense_mediated_decay start - 1 424.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0028 3 -2.0 MINOR ENSMUSG00000078452 Raet1d ENSMUST00000095795 ENSMUSP00000093471 TRANSLATION protein_coding - CCDS35866.1 1 249.0 0.0 1.8 0.0 355.1 1.0 -3,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000078452 Raet1d ENSMUST00000182677 ENSMUSP00000138328 TRANSLATION protein_coding - CCDS35866.1 5 249.0 0.0 1.8 0.0 355.1 1.0 -3,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000033105 Lss ENSMUST00000163049 ENSMUSP00000125575 TRANSLATION protein_coding start - 3 29.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033105 Lss ENSMUST00000159013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033105 Lss ENSMUST00000048678 ENSMUSP00000046856 TRANSLATION protein_coding - CCDS23948.1 1 733.0 10.0 18.58 24.4 134.8 0.0 -4,-7 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000033105 Lss ENSMUST00000159172 - NO_TRANSLATION retained_intron ENSMUSG00000033105 Lss ENSMUST00000160671 - NO_TRANSLATION retained_intron ENSMUSG00000033105 Lss ENSMUST00000162282 - NO_TRANSLATION retained_intron ENSMUSG00000033105 Lss ENSMUST00000162475 - NO_TRANSLATION retained_intron ENSMUSG00000033105 Lss ENSMUST00000162848 - NO_TRANSLATION retained_intron ENSMUSG00000056888 Glipr1 ENSMUST00000174201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056888 Glipr1 ENSMUST00000161870 ENSMUSP00000134094 TRANSLATION protein_coding start - 3 98.0 1.0 2.18 0.0 33.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000056888 Glipr1 ENSMUST00000162508 ENSMUSP00000123990 TRANSLATION protein_coding - CCDS24169.1 5 255.0 2.0 4.34 0.4 89.1 1.0 2,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000056888 Glipr1 ENSMUST00000159550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056888 Glipr1 ENSMUST00000074805 ENSMUSP00000074359 TRANSLATION protein_coding - CCDS24169.1 1 255.0 2.0 4.34 0.4 89.1 1.0 2,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000004360 9330159F19Rik ENSMUST00000213490 ENSMUSP00000149712 TRANSLATION nonsense_mediated_decay - - 1 211.0 0.0 0.0 0.0 143.2 0.0 -4,-5 0.0517 3 -2.0 MINOR ENSMUSG00000004360 9330159F19Rik ENSMUST00000092627 ENSMUSP00000090291 TRANSLATION protein_coding - CCDS48527.1 1 648.0 0.0 0.0 0.3 143.2 0.0 -4,-5 1.0 15 6.0 PRINCIPAL:1 ENSMUSG00000004360 9330159F19Rik ENSMUST00000213489 ENSMUSP00000151062 TRANSLATION protein_coding - CCDS48527.1 1 648.0 0.0 0.0 0.3 143.2 0.0 -4,-5 1.0 15 6.0 PRINCIPAL:1 ENSMUSG00000112919 Cdc5lrt10 ENSMUST00000178998 ENSMUSP00000151392 TRANSLATION protein_coding - - - 802.0 0.0 0.6 30.9 351.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000019789 Hey2 ENSMUST00000019924 ENSMUSP00000019924 TRANSLATION protein_coding - CCDS23766.1 1 339.0 0.0 2.45 24.1 116.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000019789 Hey2 ENSMUST00000217504 - NO_TRANSLATION retained_intron ENSMUSG00000020175 Rab36 ENSMUST00000147802 ENSMUSP00000119399 TRANSLATION protein_coding - - 5 267.0 22.0 7.51 9.7 151.8 0.0 -4,-7 0.8704 6 21.0 PRINCIPAL:1 ENSMUSG00000020175 Rab36 ENSMUST00000234625 ENSMUSP00000157124 TRANSLATION protein_coding - CCDS23923.1 - 267.0 22.0 7.51 9.7 151.8 0.0 -4,-7 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000020175 Rab36 ENSMUST00000146440 ENSMUSP00000121693 TRANSLATION protein_coding - - 5 267.0 22.0 7.51 9.7 151.8 0.0 -4,-7 0.8704 6 21.0 PRINCIPAL:1 ENSMUSG00000020175 Rab36 ENSMUST00000142507 - NO_TRANSLATION retained_intron ENSMUSG00000020175 Rab36 ENSMUST00000122815 - NO_TRANSLATION retained_intron ENSMUSG00000020175 Rab36 ENSMUST00000136944 - NO_TRANSLATION retained_intron ENSMUSG00000020175 Rab36 ENSMUST00000151432 - NO_TRANSLATION retained_intron ENSMUSG00000020175 Rab36 ENSMUST00000020391 ENSMUSP00000020391 TRANSLATION protein_coding stop - 5 101.0 11.0 3.1 0.0 40.3 0.0 -4,-7 0.0003 4 -2.0 MINOR ENSMUSG00000020175 Rab36 ENSMUST00000139384 ENSMUSP00000118718 TRANSLATION protein_coding stop - 5 134.0 8.0 4.1 0.0 50.7 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000047642 D930020B18Rik ENSMUST00000140802 ENSMUSP00000121976 TRANSLATION nonsense_mediated_decay - - 2 152.0 0.0 0.0 0.0 196.3 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000047642 D930020B18Rik ENSMUST00000142501 ENSMUSP00000118939 TRANSLATION protein_coding stop - 5 182.0 0.0 0.0 0.0 207.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047642 D930020B18Rik ENSMUST00000132744 ENSMUSP00000118274 TRANSLATION protein_coding start - 5 450.0 0.0 0.0 0.0 436.6 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000047642 D930020B18Rik ENSMUST00000120642 ENSMUSP00000113963 TRANSLATION protein_coding - CCDS36074.2 5 626.0 0.0 0.0 5.3 777.2 0.0 -4,-1 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000019971 Cep290 ENSMUST00000220231 - NO_TRANSLATION retained_intron ENSMUSG00000019971 Cep290 ENSMUST00000218703 - NO_TRANSLATION retained_intron ENSMUSG00000019971 Cep290 ENSMUST00000219643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019971 Cep290 ENSMUST00000219408 ENSMUSP00000151414 TRANSLATION protein_coding start - 2 237.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000019971 Cep290 ENSMUST00000218000 - NO_TRANSLATION retained_intron ENSMUSG00000019971 Cep290 ENSMUST00000164751 ENSMUSP00000130899 TRANSLATION protein_coding - CCDS48685.1 5 2479.0 0.0 0.0 8.4 172.7 0.0 -4,-5 1.0 10 4.922 PRINCIPAL:4 ENSMUSG00000019971 Cep290 ENSMUST00000220331 - NO_TRANSLATION retained_intron ENSMUSG00000019971 Cep290 ENSMUST00000219889 - NO_TRANSLATION retained_intron ENSMUSG00000019971 Cep290 ENSMUST00000220346 ENSMUSP00000151388 TRANSLATION protein_coding - CCDS48685.1 5 2479.0 0.0 0.0 8.4 172.7 0.0 -4,-5 1.0 10 4.922 PRINCIPAL:4 ENSMUSG00000019971 Cep290 ENSMUST00000219765 ENSMUSP00000151712 TRANSLATION protein_coding - - 5 2472.0 0.0 0.0 8.6 172.7 0.0 -4,-5 0.8504 10 5.0 ALTERNATIVE:1 ENSMUSG00000035963 Odf3l2 ENSMUST00000095464 ENSMUSP00000093117 TRANSLATION protein_coding - CCDS23980.1 1 277.0 0.0 0.0 4.5 76.3 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000096546 Smlr1 ENSMUST00000179685 ENSMUSP00000136316 TRANSLATION protein_coding - CCDS56698.1 1 66.0 0.0 0.0 0.4 0.0 0.0 -2,-5 0.8763 - 0.0 PRINCIPAL:1 ENSMUSG00000096546 Smlr1 ENSMUST00000187490 - NO_TRANSLATION retained_intron ENSMUSG00000019975 Ikbip ENSMUST00000130682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019975 Ikbip ENSMUST00000128371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019975 Ikbip ENSMUST00000020150 ENSMUSP00000020150 TRANSLATION protein_coding - CCDS24119.1 1 345.0 0.0 1.4 9.0 0.0 2.0 -4,-5 1.0 7 9.0 ALTERNATIVE:1 ENSMUSG00000019975 Ikbip ENSMUST00000211056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019975 Ikbip ENSMUST00000020149 ENSMUSP00000020149 TRANSLATION protein_coding - CCDS36031.1 1 373.0 0.0 1.4 6.1 0.0 2.0 -4,-5 0.786 14 7.911 PRINCIPAL:3 ENSMUSG00000019975 Ikbip ENSMUST00000135152 - NO_TRANSLATION retained_intron ENSMUSG00000003746 Man1a ENSMUST00000146483 - NO_TRANSLATION retained_intron ENSMUSG00000003746 Man1a ENSMUST00000220088 ENSMUSP00000151568 TRANSLATION protein_coding stop - 5 744.0 0.0 10.75 1.0 501.1 3.0 -4,-5 0.2475 12 -2.0 MINOR ENSMUSG00000003746 Man1a ENSMUST00000105470 ENSMUSP00000101110 TRANSLATION protein_coding - CCDS23848.1 5 655.0 0.0 10.75 5.2 501.1 3.0 -4,-7 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000003746 Man1a ENSMUST00000218317 ENSMUSP00000151328 TRANSLATION nonsense_mediated_decay - - 1 361.0 0.0 2.75 0.0 119.7 3.0 -4,-7 0.0016 6 -2.0 MINOR ENSMUSG00000003746 Man1a ENSMUST00000133330 - NO_TRANSLATION retained_intron ENSMUSG00000003746 Man1a ENSMUST00000003843 ENSMUSP00000003843 TRANSLATION protein_coding - CCDS23848.1 1 655.0 0.0 10.75 5.2 501.1 3.0 -4,-7 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000003746 Man1a ENSMUST00000105469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003746 Man1a ENSMUST00000219234 - NO_TRANSLATION retained_intron ENSMUSG00000009646 Pla2g12b ENSMUST00000009790 ENSMUSP00000009790 TRANSLATION protein_coding - CCDS23864.1 1 195.0 0.0 0.0 10.9 288.0 0.0 3,-2 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000009646 Pla2g12b ENSMUST00000162643 ENSMUSP00000123842 TRANSLATION protein_coding start - 2 101.0 0.0 0.0 0.0 117.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034591 Slc41a2 ENSMUST00000039956 ENSMUSP00000036690 TRANSLATION protein_coding - CCDS24075.1 1 573.0 0.0 8.95 0.0 187.3 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000034591 Slc41a2 ENSMUST00000126617 ENSMUSP00000115120 TRANSLATION protein_coding stop - 2 89.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034591 Slc41a2 ENSMUST00000154926 ENSMUSP00000116482 TRANSLATION protein_coding stop - 3 131.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034591 Slc41a2 ENSMUST00000139329 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034591 Slc41a2 ENSMUST00000154730 ENSMUSP00000123470 TRANSLATION protein_coding stop - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000218903 ENSMUSP00000151685 TRANSLATION protein_coding - - 1 918.0 0.0 7.8 0.0 455.5 0.0 -4,-5 0.175 38 7.41 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000217844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019978 Epb41l2 ENSMUST00000092645 ENSMUSP00000090314 TRANSLATION protein_coding - CCDS23754.1 5 988.0 0.0 7.8 0.0 532.0 0.0 -4,-5 1.0 44 12.0 PRINCIPAL:1 ENSMUSG00000019978 Epb41l2 ENSMUST00000219201 - NO_TRANSLATION retained_intron ENSMUSG00000019978 Epb41l2 ENSMUST00000219900 ENSMUSP00000151332 TRANSLATION protein_coding stop - 1 513.0 0.0 6.8 0.0 222.0 0.0 -4,-5 0.0003 23 -2.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000217929 ENSMUSP00000151875 TRANSLATION protein_coding - - 1 794.0 0.0 7.8 0.0 430.8 0.0 -4,-5 0.0611 32 6.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000219805 ENSMUSP00000151233 TRANSLATION protein_coding stop - 1 513.0 0.0 6.8 0.0 222.0 0.0 -4,-5 0.0003 23 -2.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000220290 ENSMUSP00000151707 TRANSLATION protein_coding - - 5 201.0 0.0 0.0 0.0 178.2 0.0 -4,-5 0.0 10 0.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000218345 - NO_TRANSLATION retained_intron ENSMUSG00000019978 Epb41l2 ENSMUST00000217943 ENSMUSP00000152003 TRANSLATION protein_coding start/stop - 1 204.0 0.0 0.0 0.0 43.4 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000219967 ENSMUSP00000151632 TRANSLATION protein_coding stop - 3 144.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000053748 ENSMUSP00000055122 TRANSLATION protein_coding - CCDS23754.1 1 988.0 0.0 7.8 0.0 532.0 0.0 -4,-5 1.0 44 12.0 PRINCIPAL:1 ENSMUSG00000019978 Epb41l2 ENSMUST00000219372 ENSMUSP00000151258 TRANSLATION protein_coding start - 2 131.0 0.0 0.0 0.0 149.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000219166 ENSMUSP00000151702 TRANSLATION protein_coding stop - 2 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000220335 - NO_TRANSLATION retained_intron ENSMUSG00000019978 Epb41l2 ENSMUST00000219941 - NO_TRANSLATION retained_intron ENSMUSG00000019978 Epb41l2 ENSMUST00000219224 ENSMUSP00000151926 TRANSLATION protein_coding stop - 2 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000220121 ENSMUSP00000158664 TRANSLATION protein_coding start - 1 806.0 0.0 7.8 0.0 288.2 0.0 -4,-5 0.0619 25 -2.0 MINOR ENSMUSG00000019978 Epb41l2 ENSMUST00000219138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019978 Epb41l2 ENSMUST00000219390 - NO_TRANSLATION retained_intron ENSMUSG00000034833 Tespa1 ENSMUST00000042586 ENSMUSP00000047284 TRANSLATION protein_coding - CCDS48735.1 1 458.0 0.0 0.5 0.0 174.8 0.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000034833 Tespa1 ENSMUST00000218040 - NO_TRANSLATION retained_intron ENSMUSG00000034833 Tespa1 ENSMUST00000218605 ENSMUSP00000151338 TRANSLATION protein_coding stop - 3 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0222 - -2.0 MINOR ENSMUSG00000034833 Tespa1 ENSMUST00000217702 ENSMUSP00000152009 TRANSLATION protein_coding - - 1 238.0 0.0 0.5 0.0 127.0 0.0 -4,-2 0.0334 1 9.132 MINOR ENSMUSG00000034833 Tespa1 ENSMUST00000219450 - NO_TRANSLATION retained_intron ENSMUSG00000034833 Tespa1 ENSMUST00000220164 - NO_TRANSLATION retained_intron ENSMUSG00000038446 Cdc40 ENSMUST00000044166 ENSMUSP00000044305 TRANSLATION protein_coding - CCDS48546.1 1 579.0 0.0 12.5 18.0 101.2 0.0 -3,-6 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000038446 Cdc40 ENSMUST00000215625 - NO_TRANSLATION retained_intron ENSMUSG00000038446 Cdc40 ENSMUST00000215441 - NO_TRANSLATION retained_intron ENSMUSG00000038446 Cdc40 ENSMUST00000215051 - NO_TRANSLATION retained_intron ENSMUSG00000038446 Cdc40 ENSMUST00000216025 - NO_TRANSLATION retained_intron ENSMUSG00000059763 Taar2 ENSMUST00000079134 ENSMUSP00000078137 TRANSLATION protein_coding - CCDS35869.1 1 339.0 0.0 1.198 2.8 177.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000034889 Cactin ENSMUST00000219285 - NO_TRANSLATION retained_intron ENSMUSG00000034889 Cactin ENSMUST00000218120 ENSMUSP00000151248 TRANSLATION protein_coding start/stop - 3 222.0 0.0 0.0 0.0 178.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000034889 Cactin ENSMUST00000050867 ENSMUSP00000059533 TRANSLATION protein_coding - CCDS35995.1 1 772.0 0.0 0.0 0.0 412.2 0.0 -4,-7 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000075045 Gm4981 ENSMUST00000099726 ENSMUSP00000097314 TRANSLATION protein_coding - CCDS48564.1 - 291.0 0.0 0.0 0.0 41.7 0.0 -4,0 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000025396 Hsd17b6 ENSMUST00000219183 ENSMUSP00000151661 TRANSLATION protein_coding - CCDS24257.1 1 317.0 27.0 6.0 17.6 131.2 0.0 -2,-6 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000025396 Hsd17b6 ENSMUST00000219447 ENSMUSP00000151556 TRANSLATION protein_coding - CCDS24257.1 1 317.0 27.0 6.0 17.6 131.2 0.0 -2,-6 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000025396 Hsd17b6 ENSMUST00000026462 ENSMUSP00000026462 TRANSLATION protein_coding - CCDS24257.1 5 317.0 27.0 6.0 17.6 131.2 0.0 -2,-6 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000025396 Hsd17b6 ENSMUST00000219707 ENSMUSP00000151807 TRANSLATION protein_coding stop - 3 136.0 14.0 3.0 0.0 56.5 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000025396 Hsd17b6 ENSMUST00000219953 ENSMUSP00000151374 TRANSLATION protein_coding stop - 3 101.0 10.0 2.0 0.0 36.9 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000025396 Hsd17b6 ENSMUST00000219780 ENSMUSP00000151670 TRANSLATION protein_coding stop - 3 56.0 5.0 1.0 0.0 0.0 0.0 -1,-7 0.0 - -2.0 MINOR ENSMUSG00000020083 Fam241b ENSMUST00000027719 ENSMUSP00000027719 TRANSLATION protein_coding - - 3 100.0 0.0 0.0 0.0 91.2 0.0 -4,-5 0.0245 1 6.0 MINOR ENSMUSG00000020083 Fam241b ENSMUST00000142796 ENSMUSP00000116424 TRANSLATION protein_coding - CCDS23886.1 1 120.0 0.0 0.0 17.8 91.2 0.0 -4,-6 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000020083 Fam241b ENSMUST00000124615 ENSMUSP00000118912 TRANSLATION protein_coding - CCDS23886.1 1 120.0 0.0 0.0 17.8 91.2 0.0 -4,-6 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000020083 Fam241b ENSMUST00000156798 ENSMUSP00000115712 TRANSLATION protein_coding stop - 3 100.0 0.0 0.0 0.0 56.5 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000020083 Fam241b ENSMUST00000142821 ENSMUSP00000119289 TRANSLATION protein_coding - CCDS23886.1 5 120.0 0.0 0.0 17.8 91.2 0.0 -4,-6 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000020083 Fam241b ENSMUST00000141144 ENSMUSP00000119982 TRANSLATION protein_coding stop - 2 99.0 0.0 0.0 0.0 54.9 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000020083 Fam241b ENSMUST00000150057 ENSMUSP00000114453 TRANSLATION protein_coding stop - 5 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020083 Fam241b ENSMUST00000138450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020083 Fam241b ENSMUST00000141724 ENSMUSP00000119343 TRANSLATION protein_coding stop - 3 122.0 0.0 0.0 0.0 54.9 0.0 -4,-6 0.0141 2 -2.0 MINOR ENSMUSG00000020083 Fam241b ENSMUST00000125704 ENSMUSP00000115865 TRANSLATION protein_coding - CCDS23886.1 1 120.0 0.0 0.0 17.8 91.2 0.0 -4,-6 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000078427 Sarnp ENSMUST00000220150 - NO_TRANSLATION retained_intron ENSMUSG00000078427 Sarnp ENSMUST00000220381 ENSMUSP00000151317 TRANSLATION nonsense_mediated_decay - - 1 147.0 0.0 1.5 0.0 41.0 0.0 -4,-5 0.03 5 -2.0 MINOR ENSMUSG00000078427 Sarnp ENSMUST00000105230 ENSMUSP00000100863 TRANSLATION protein_coding - CCDS36092.1 1 210.0 0.0 1.5 26.9 41.0 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000078427 Sarnp ENSMUST00000218622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078427 Sarnp ENSMUST00000219512 ENSMUSP00000151656 TRANSLATION protein_coding - - 3 127.0 0.0 0.0 0.1 0.0 0.0 -4,-6 0.0 8 0.0 MINOR ENSMUSG00000020100 Slc29a3 ENSMUST00000150845 ENSMUSP00000119716 TRANSLATION nonsense_mediated_decay - - 1 156.0 0.0 0.565 0.0 0.0 1.0 -4,-5 0.0015 2 -2.0 MINOR ENSMUSG00000020100 Slc29a3 ENSMUST00000119595 ENSMUSP00000112426 TRANSLATION protein_coding - - 1 206.0 0.0 1.705 0.0 0.0 5.0 -4,-5 0.0044 2 4.398 MINOR ENSMUSG00000020100 Slc29a3 ENSMUST00000144989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020100 Slc29a3 ENSMUST00000117513 ENSMUSP00000112685 TRANSLATION protein_coding - CCDS48571.1 1 475.0 0.0 2.325 8.8 201.0 12.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000020100 Slc29a3 ENSMUST00000127386 - NO_TRANSLATION retained_intron ENSMUSG00000053219 Raet1e ENSMUST00000180648 ENSMUSP00000137946 TRANSLATION protein_coding stop - 3 66.0 0.0 1.0 0.0 45.7 0.0 -3,-7 0.0 - -2.0 MINOR ENSMUSG00000053219 Raet1e ENSMUST00000178026 ENSMUSP00000136032 TRANSLATION protein_coding - CCDS35865.1 1 251.0 0.0 2.8 0.0 360.2 0.0 -3,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000053219 Raet1e ENSMUST00000065527 ENSMUSP00000066627 TRANSLATION protein_coding - CCDS35865.1 1 251.0 0.0 2.8 0.0 360.2 0.0 -3,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000053219 Raet1e ENSMUST00000181645 ENSMUSP00000138022 TRANSLATION protein_coding - CCDS35865.1 1 251.0 0.0 2.8 0.0 360.2 0.0 -3,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000019845 Tube1 ENSMUST00000217214 - NO_TRANSLATION retained_intron ENSMUSG00000019845 Tube1 ENSMUST00000214493 - NO_TRANSLATION retained_intron ENSMUSG00000019845 Tube1 ENSMUST00000213459 ENSMUSP00000150602 TRANSLATION nonsense_mediated_decay - - 1 216.0 18.0 3.964 0.0 212.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000019845 Tube1 ENSMUST00000019991 ENSMUSP00000019991 TRANSLATION protein_coding - CCDS23787.1 1 475.0 21.0 5.414 36.2 325.0 0.0 -4,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000019845 Tube1 ENSMUST00000213237 - NO_TRANSLATION retained_intron ENSMUSG00000019845 Tube1 ENSMUST00000213898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069582 Krtap10-4 ENSMUST00000092369 ENSMUSP00000139550 TRANSLATION protein_coding - CCDS78848.1 - 221.0 0.0 0.0 0.0 62.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094734 Or6c209 ENSMUST00000214182 ENSMUSP00000149485 TRANSLATION protein_coding - CCDS24326.1 5 311.0 0.0 1.0 11.5 155.5 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094734 Or6c209 ENSMUST00000213820 ENSMUSP00000149826 TRANSLATION protein_coding - CCDS24326.1 5 311.0 0.0 1.0 11.5 155.5 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094734 Or6c209 ENSMUST00000217364 ENSMUSP00000150406 TRANSLATION protein_coding - CCDS24326.1 5 311.0 0.0 1.0 11.5 155.5 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094734 Or6c209 ENSMUST00000071126 ENSMUSP00000071126 TRANSLATION protein_coding - CCDS24326.1 - 311.0 0.0 1.0 11.5 155.5 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094734 Or6c209 ENSMUST00000216446 ENSMUSP00000151080 TRANSLATION protein_coding - CCDS24326.1 5 311.0 0.0 1.0 11.5 155.5 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035262 Amh ENSMUST00000036016 ENSMUSP00000043153 TRANSLATION protein_coding - CCDS24033.1 1 554.0 0.0 0.0 0.4 489.4 0.0 -1,-4 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000035027 Map2k2 ENSMUST00000128937 - NO_TRANSLATION retained_intron ENSMUSG00000035027 Map2k2 ENSMUST00000048223 ENSMUSP00000137918 TRANSLATION nonsense_mediated_decay - - 1 203.0 15.0 2.95 0.0 67.2 0.0 -2,-4 0.0 6 -2.0 MINOR ENSMUSG00000035027 Map2k2 ENSMUST00000136743 ENSMUSP00000117567 TRANSLATION protein_coding stop - 5 84.0 9.0 1.75 0.0 50.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000035027 Map2k2 ENSMUST00000105331 ENSMUSP00000100968 TRANSLATION protein_coding - CCDS83734.1 1 400.0 21.0 8.155 29.9 207.8 0.0 -2,-4 1.0 7 16.0 PRINCIPAL:4 ENSMUSG00000035027 Map2k2 ENSMUST00000123241 - NO_TRANSLATION retained_intron ENSMUSG00000035027 Map2k2 ENSMUST00000218571 ENSMUSP00000151546 TRANSLATION protein_coding start - 3 65.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000035027 Map2k2 ENSMUST00000143517 ENSMUSP00000121111 TRANSLATION protein_coding - CCDS24044.1 1 401.0 21.0 8.0275 29.9 207.8 0.0 -2,-4 0.9933 7 15.748 ALTERNATIVE:1 ENSMUSG00000035027 Map2k2 ENSMUST00000220329 ENSMUSP00000151784 TRANSLATION protein_coding start - 3 196.0 0.0 2.625 0.0 54.8 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000035027 Map2k2 ENSMUST00000123888 - NO_TRANSLATION retained_intron ENSMUSG00000060002 Chpt1 ENSMUST00000117579 ENSMUSP00000113179 TRANSLATION protein_coding - - 1 232.0 0.0 3.8 0.0 68.0 10.0 -4,-2 0.0277 1 0.0 MINOR ENSMUSG00000060002 Chpt1 ENSMUST00000126074 ENSMUSP00000123429 TRANSLATION nonsense_mediated_decay - - 5 218.0 0.0 4.55 0.0 68.0 11.0 -4,-2 0.0286 1 -2.0 MINOR ENSMUSG00000060002 Chpt1 ENSMUST00000020253 ENSMUSP00000020253 TRANSLATION protein_coding - CCDS24112.1 1 398.0 0.0 9.38 0.0 68.0 18.0 -4,-2 0.3125 2 6.0 ALTERNATIVE:2 ENSMUSG00000060002 Chpt1 ENSMUST00000139109 ENSMUSP00000116413 TRANSLATION nonsense_mediated_decay - CCDS24112.1 1 398.0 0.0 9.38 0.0 68.0 18.0 -4,-2 0.3125 - -2.0 MINOR ENSMUSG00000060002 Chpt1 ENSMUST00000143108 ENSMUSP00000117620 TRANSLATION nonsense_mediated_decay start - 5 184.0 0.0 3.75 0.0 68.0 11.0 -3,-5 0.0207 - -2.0 MINOR ENSMUSG00000060002 Chpt1 ENSMUST00000134318 ENSMUSP00000122428 TRANSLATION protein_coding start - 5 160.0 0.0 4.08 0.0 0.0 6.0 -4,-7 0.004 - -2.0 MINOR ENSMUSG00000060002 Chpt1 ENSMUST00000117440 ENSMUSP00000112708 TRANSLATION protein_coding - CCDS48665.1 5 406.0 0.0 9.38 3.6 68.0 18.0 -4,-2 1.0 2 7.0 PRINCIPAL:2 ENSMUSG00000060002 Chpt1 ENSMUST00000148899 ENSMUSP00000120167 TRANSLATION protein_coding start - 3 84.0 0.0 2.0 0.0 0.0 2.0 -4,-7 0.0006 - -2.0 MINOR ENSMUSG00000060002 Chpt1 ENSMUST00000073783 ENSMUSP00000073455 TRANSLATION protein_coding - - 1 237.0 0.0 3.8 0.0 68.0 10.0 -4,-2 0.0294 1 0.0 MINOR ENSMUSG00000096858 Or6c212 ENSMUST00000217219 ENSMUSP00000149493 TRANSLATION protein_coding - CCDS24332.1 5 319.0 0.0 2.0 5.6 175.8 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096858 Or6c212 ENSMUST00000216794 ENSMUSP00000149243 TRANSLATION protein_coding - CCDS24332.1 5 319.0 0.0 2.0 5.6 175.8 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096858 Or6c212 ENSMUST00000204717 ENSMUSP00000145414 TRANSLATION protein_coding stop - 5 47.0 0.0 1.0 0.0 0.0 1.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000096858 Or6c212 ENSMUST00000078876 ENSMUSP00000092874 TRANSLATION protein_coding - CCDS24332.1 - 319.0 0.0 2.0 5.6 175.8 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000019874 Fabp7 ENSMUST00000165013 ENSMUSP00000131415 TRANSLATION protein_coding - - 2 188.0 19.0 2.75 0.0 83.1 0.0 -4,-5 0.0031 4 16.674 MINOR ENSMUSG00000019874 Fabp7 ENSMUST00000020024 ENSMUSP00000020024 TRANSLATION protein_coding - CCDS23856.1 1 132.0 19.0 3.25 36.9 87.8 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000019782 Rwdd1 ENSMUST00000128699 - NO_TRANSLATION retained_intron ENSMUSG00000019782 Rwdd1 ENSMUST00000219414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019782 Rwdd1 ENSMUST00000019917 ENSMUSP00000019917 TRANSLATION protein_coding - CCDS23773.1 1 243.0 0.0 4.5 22.3 122.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000001663 Gstt1 ENSMUST00000001713 ENSMUSP00000001713 TRANSLATION protein_coding - CCDS23932.1 1 240.0 11.0 5.0 11.9 76.8 0.0 -4,-6 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000001663 Gstt1 ENSMUST00000139724 ENSMUSP00000117130 TRANSLATION protein_coding stop - 2 126.0 5.0 2.5 0.0 45.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001663 Gstt1 ENSMUST00000120177 ENSMUSP00000113839 TRANSLATION protein_coding - - 2 232.0 10.0 4.4 0.0 69.4 0.0 -4,-7 0.0127 8 15.558 MINOR ENSMUSG00000054052 Rdh19 ENSMUST00000077530 ENSMUSP00000076735 TRANSLATION protein_coding - CCDS24253.1 1 318.0 27.0 4.0 16.0 143.1 0.0 0,-4 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000020154 Ptprb ENSMUST00000092167 ENSMUSP00000089805 TRANSLATION protein_coding - CCDS36063.1 1 1998.0 13.0 7.63 8.9 806.3 0.0 3,-2 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000020154 Ptprb ENSMUST00000218553 ENSMUSP00000151821 TRANSLATION protein_coding - - 5 2285.0 13.0 7.63 0.0 806.3 0.0 -1,-4 0.3128 21 18.0 MINOR ENSMUSG00000020154 Ptprb ENSMUST00000217925 - NO_TRANSLATION retained_intron ENSMUSG00000020154 Ptprb ENSMUST00000218601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025381 Cnpy2 ENSMUST00000026446 ENSMUSP00000026446 TRANSLATION protein_coding - CCDS24272.1 5 182.0 0.0 4.0 9.7 144.4 0.0 4,-1 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000025381 Cnpy2 ENSMUST00000219037 ENSMUSP00000151918 TRANSLATION protein_coding - CCDS24272.1 1 182.0 0.0 4.0 9.7 144.4 0.0 4,-1 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000025381 Cnpy2 ENSMUST00000219836 ENSMUSP00000151502 TRANSLATION protein_coding stop - 3 136.0 0.0 2.6 0.0 99.9 0.0 4,-1 0.0003 9 -2.0 MINOR ENSMUSG00000025381 Cnpy2 ENSMUST00000219199 - NO_TRANSLATION retained_intron ENSMUSG00000025381 Cnpy2 ENSMUST00000220391 - NO_TRANSLATION retained_intron ENSMUSG00000045518 Onecut3 ENSMUST00000051773 ENSMUSP00000053288 TRANSLATION protein_coding - CCDS24023.1 1 490.0 0.0 1.2 0.3 145.9 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040354 Mars1 ENSMUST00000145275 - NO_TRANSLATION retained_intron ENSMUSG00000040354 Mars1 ENSMUST00000128369 - NO_TRANSLATION retained_intron ENSMUSG00000040354 Mars1 ENSMUST00000171564 ENSMUSP00000130666 TRANSLATION protein_coding - CCDS48716.1 5 910.0 26.0 19.68 8.6 571.1 0.0 -4,-2 0.9829 30 16.652 ALTERNATIVE:1 ENSMUSG00000040354 Mars1 ENSMUST00000139683 - NO_TRANSLATION retained_intron ENSMUSG00000040354 Mars1 ENSMUST00000037290 ENSMUSP00000037446 TRANSLATION protein_coding - CCDS24237.1 1 902.0 26.0 19.68 9.6 571.1 0.0 -4,-2 1.0 30 17.0 PRINCIPAL:4 ENSMUSG00000040354 Mars1 ENSMUST00000134778 ENSMUSP00000118031 TRANSLATION protein_coding start - 3 184.0 0.0 3.68 0.0 62.6 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000078439 Smim24 ENSMUST00000105322 ENSMUSP00000100959 TRANSLATION protein_coding - CCDS35998.1 1 120.0 0.0 1.1 0.4 162.3 0.0 0,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000078439 Smim24 ENSMUST00000129083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078439 Smim24 ENSMUST00000118206 ENSMUSP00000113817 TRANSLATION protein_coding - - 1 72.0 0.0 0.5 0.0 61.4 0.0 -4,-5 0.0 3 2.73 MINOR ENSMUSG00000062981 Mrpl42 ENSMUST00000218893 ENSMUSP00000151636 TRANSLATION protein_coding - CCDS24137.1 1 142.0 0.0 2.63 10.3 138.8 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000062981 Mrpl42 ENSMUST00000217777 ENSMUSP00000151315 TRANSLATION protein_coding - - 1 77.0 0.0 1.5 1.2 43.0 0.0 -4,-2 0.0121 - 3.738 MINOR ENSMUSG00000062981 Mrpl42 ENSMUST00000075829 ENSMUSP00000075226 TRANSLATION protein_coding - CCDS24137.1 1 142.0 0.0 2.63 10.3 138.8 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000062981 Mrpl42 ENSMUST00000219019 ENSMUSP00000151613 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 1.5 0.0 43.0 0.0 -4,-2 0.0003 - -2.0 MINOR ENSMUSG00000062981 Mrpl42 ENSMUST00000218996 - NO_TRANSLATION retained_intron ENSMUSG00000047492 Inhbe ENSMUST00000059718 ENSMUSP00000053977 TRANSLATION protein_coding - CCDS24239.1 1 350.0 0.0 0.8 4.1 100.1 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000020091 Eif4ebp2 ENSMUST00000020288 ENSMUSP00000020288 TRANSLATION protein_coding - CCDS23879.1 1 120.0 0.0 2.0 0.0 160.3 0.0 -4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000019814 Ltv1 ENSMUST00000019950 ENSMUSP00000019950 TRANSLATION protein_coding - CCDS35845.1 1 470.0 0.0 1.35 11.6 281.5 0.0 -4,-6 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000019814 Ltv1 ENSMUST00000219824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019802 Sec63 ENSMUST00000019937 ENSMUSP00000019937 TRANSLATION protein_coding - CCDS23815.1 1 760.0 0.0 5.5875 0.3 130.5 0.0 -4,-7 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000019802 Sec63 ENSMUST00000105496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019802 Sec63 ENSMUST00000144228 - NO_TRANSLATION retained_intron ENSMUSG00000019802 Sec63 ENSMUST00000124613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019802 Sec63 ENSMUST00000155410 - NO_TRANSLATION retained_intron ENSMUSG00000000296 Tpd52l1 ENSMUST00000000305 ENSMUSP00000000305 TRANSLATION protein_coding - CCDS35877.1 1 204.0 0.0 3.25 24.1 240.0 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000000296 Tpd52l1 ENSMUST00000213528 ENSMUSP00000149177 TRANSLATION protein_coding - - 1 209.0 0.0 3.25 24.1 239.8 0.0 -4,-5 0.7995 5 10.0 ALTERNATIVE:1 ENSMUSG00000000296 Tpd52l1 ENSMUST00000215515 ENSMUSP00000149266 TRANSLATION protein_coding - - 2 144.0 0.0 2.5 6.8 182.5 0.0 -4,-5 0.1396 3 5.504 MINOR ENSMUSG00000000296 Tpd52l1 ENSMUST00000214644 ENSMUSP00000149749 TRANSLATION protein_coding - - 1 131.0 0.0 2.5 8.7 181.0 0.0 -4,-5 0.1584 3 5.832 MINOR ENSMUSG00000000296 Tpd52l1 ENSMUST00000213639 ENSMUSP00000150184 TRANSLATION protein_coding - - 2 191.0 0.0 3.25 14.6 245.7 0.0 -4,-5 0.8587 5 10.356 MINOR ENSMUSG00000019792 Trmt11 ENSMUST00000019927 ENSMUSP00000019927 TRANSLATION protein_coding - CCDS23763.1 1 460.0 18.0 0.265 11.4 46.1 0.0 -4,-6 1.0 8 18.924 PRINCIPAL:1 ENSMUSG00000019792 Trmt11 ENSMUST00000216705 ENSMUSP00000149246 TRANSLATION nonsense_mediated_decay start - 3 100.0 0.0 0.36 0.0 0.0 0.0 -4,-6 0.0002 3 -2.0 MINOR ENSMUSG00000019792 Trmt11 ENSMUST00000216638 - NO_TRANSLATION retained_intron ENSMUSG00000019792 Trmt11 ENSMUST00000215595 ENSMUSP00000149835 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000019792 Trmt11 ENSMUST00000215041 ENSMUSP00000151084 TRANSLATION nonsense_mediated_decay start - 5 112.0 4.0 0.405 0.0 0.0 0.0 -4,-5 0.0208 - -2.0 MINOR ENSMUSG00000019792 Trmt11 ENSMUST00000216790 ENSMUSP00000149782 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000003344 Btbd2 ENSMUST00000147162 - NO_TRANSLATION retained_intron ENSMUSG00000003344 Btbd2 ENSMUST00000151794 - NO_TRANSLATION retained_intron ENSMUSG00000003344 Btbd2 ENSMUST00000126980 ENSMUSP00000120751 TRANSLATION protein_coding - - 5 508.0 0.0 7.75 0.1 313.6 0.0 -4,-2 0.7875 6 12.0 PRINCIPAL:1 ENSMUSG00000003344 Btbd2 ENSMUST00000131876 ENSMUSP00000120780 TRANSLATION protein_coding start/stop - 5 256.0 0.0 4.63 0.0 116.6 0.0 -1,-4 0.0 3 -2.0 MINOR ENSMUSG00000069706 Taar5 ENSMUST00000092659 ENSMUSP00000090329 TRANSLATION protein_coding - CCDS23738.1 - 337.0 0.0 0.8 11.0 178.4 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025359 Pmel ENSMUST00000054125 ENSMUSP00000051869 TRANSLATION protein_coding - CCDS36091.1 1 626.0 0.0 0.0 0.0 42.3 0.0 1,-3 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000025359 Pmel ENSMUST00000219157 ENSMUSP00000151621 TRANSLATION protein_coding stop - 5 155.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0038 - -2.0 MINOR ENSMUSG00000025359 Pmel ENSMUST00000217836 ENSMUSP00000151602 TRANSLATION protein_coding stop - 3 189.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0038 1 -2.0 MINOR ENSMUSG00000035504 Reep6 ENSMUST00000105354 ENSMUSP00000100991 TRANSLATION protein_coding - CCDS35979.1 1 201.0 0.0 3.2 1.1 91.5 5.0 -4,-7 1.0 3 9.0 PRINCIPAL:2 ENSMUSG00000035504 Reep6 ENSMUST00000105358 ENSMUSP00000100995 TRANSLATION protein_coding - - 1 599.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0544 4 0.0 MINOR ENSMUSG00000035504 Reep6 ENSMUST00000105357 ENSMUSP00000100994 TRANSLATION protein_coding - - 1 572.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0544 4 0.0 MINOR ENSMUSG00000035504 Reep6 ENSMUST00000153167 - NO_TRANSLATION retained_intron ENSMUSG00000035504 Reep6 ENSMUST00000186864 ENSMUSP00000140840 TRANSLATION protein_coding - CCDS35979.1 1 201.0 0.0 3.2 1.1 91.5 5.0 -4,-7 1.0 3 9.0 PRINCIPAL:2 ENSMUSG00000035504 Reep6 ENSMUST00000105355 ENSMUSP00000100992 TRANSLATION protein_coding - CCDS56735.1 1 174.0 0.0 3.2 0.0 91.5 5.0 -4,-7 0.4137 3 8.0 ALTERNATIVE:2 ENSMUSG00000035504 Reep6 ENSMUST00000040081 ENSMUSP00000043722 TRANSLATION protein_coding - - 5 124.0 0.0 2.4 0.0 63.8 5.0 -4,-7 0.0098 1 4.398 MINOR ENSMUSG00000020265 Sumo3 ENSMUST00000173691 ENSMUSP00000134676 TRANSLATION protein_coding start - 5 47.0 0.0 1.132 0.0 39.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020265 Sumo3 ENSMUST00000099538 ENSMUSP00000097136 TRANSLATION protein_coding - CCDS78843.1 1 110.0 0.0 3.244 0.4 89.4 0.0 -4,-5 0.877 2 7.868 ALTERNATIVE:2 ENSMUSG00000020265 Sumo3 ENSMUST00000020501 ENSMUSP00000020501 TRANSLATION protein_coding - CCDS23958.1 1 110.0 0.0 3.31 1.1 89.4 0.0 -4,-5 1.0 2 8.1 PRINCIPAL:4 ENSMUSG00000020265 Sumo3 ENSMUST00000141228 ENSMUSP00000133466 TRANSLATION protein_coding - CCDS78841.1 3 96.0 0.0 2.81 0.0 67.5 0.0 -4,-5 0.0116 2 5.664 MINOR ENSMUSG00000020265 Sumo3 ENSMUST00000129492 ENSMUSP00000134416 TRANSLATION protein_coding - CCDS78842.1 2 113.0 0.0 3.31 1.1 89.4 0.0 -4,-5 0.581 2 8.1 ALTERNATIVE:2 ENSMUSG00000020265 Sumo3 ENSMUST00000137841 ENSMUSP00000133308 TRANSLATION nonsense_mediated_decay - - 2 82.0 0.0 2.66 2.0 67.2 0.0 -4,-5 0.3929 2 -2.0 MINOR ENSMUSG00000020265 Sumo3 ENSMUST00000124024 ENSMUSP00000133789 TRANSLATION protein_coding - - 2 51.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000020265 Sumo3 ENSMUST00000174295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020061 Mybpc1 ENSMUST00000156573 ENSMUSP00000119024 TRANSLATION protein_coding start/stop - 5 626.0 0.0 11.366 0.0 253.5 0.0 -4,-5 0.0002 27 -2.0 MINOR ENSMUSG00000020061 Mybpc1 ENSMUST00000238199 ENSMUSP00000158844 TRANSLATION protein_coding - - - 1139.0 0.0 20.4 1.0 448.0 0.0 -4,-5 0.3976 52 7.802 ALTERNATIVE:2 ENSMUSG00000020061 Mybpc1 ENSMUST00000124144 - NO_TRANSLATION retained_intron ENSMUSG00000020061 Mybpc1 ENSMUST00000121629 ENSMUSP00000112615 TRANSLATION protein_coding - CCDS48666.1 1 1124.0 0.0 20.4 2.0 448.0 0.0 -4,-5 1.0 52 8.802 PRINCIPAL:2 ENSMUSG00000020061 Mybpc1 ENSMUST00000153964 ENSMUSP00000122472 TRANSLATION protein_coding start - 1 362.0 0.0 6.4 0.0 169.7 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000020061 Mybpc1 ENSMUST00000119185 ENSMUSP00000112699 TRANSLATION protein_coding - CCDS56739.1 1 1127.0 0.0 20.5 0.0 448.0 0.0 -4,-5 0.5641 52 8.0 ALTERNATIVE:2 ENSMUSG00000020061 Mybpc1 ENSMUST00000148205 - NO_TRANSLATION retained_intron ENSMUSG00000019883 Echdc1 ENSMUST00000161605 ENSMUSP00000125048 TRANSLATION protein_coding stop - 5 165.0 15.0 3.25 0.0 69.6 0.0 -4,-7 0.0 10 -2.0 MINOR ENSMUSG00000019883 Echdc1 ENSMUST00000161426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019883 Echdc1 ENSMUST00000020034 ENSMUSP00000020034 TRANSLATION protein_coding - CCDS23760.1 1 322.0 19.0 4.25 0.0 128.4 0.0 -4,-5 0.0846 16 18.0 MINOR ENSMUSG00000019883 Echdc1 ENSMUST00000160399 ENSMUSP00000125553 TRANSLATION protein_coding - CCDS48528.1 1 299.0 19.0 4.25 7.3 128.4 0.0 -4,-7 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000112170 Gm9508 ENSMUST00000220084 ENSMUSP00000151808 TRANSLATION protein_coding - - - 230.0 0.0 0.0 0.0 54.5 0.0 -4,-6 0.7117 - 6.0 PRINCIPAL:1 ENSMUSG00000020063 Sirt1 ENSMUST00000177694 ENSMUSP00000137565 TRANSLATION protein_coding - - 5 553.0 21.0 4.2 0.0 208.5 0.0 -3,-5 0.0403 6 7.298 MINOR ENSMUSG00000020063 Sirt1 ENSMUST00000105442 ENSMUSP00000101082 TRANSLATION protein_coding - CCDS48585.1 1 698.0 27.0 5.55 0.0 208.5 0.0 -3,-5 1.0 8 14.0 PRINCIPAL:2 ENSMUSG00000020063 Sirt1 ENSMUST00000120239 ENSMUSP00000112595 TRANSLATION protein_coding - CCDS23898.1 5 737.0 27.0 4.8 1.5 208.5 0.0 -3,-5 0.2535 8 13.5 ALTERNATIVE:2 ENSMUSG00000020063 Sirt1 ENSMUST00000148516 - NO_TRANSLATION retained_intron ENSMUSG00000020063 Sirt1 ENSMUST00000020257 ENSMUSP00000020257 TRANSLATION protein_coding - CCDS23898.1 1 737.0 27.0 4.8 1.5 208.5 0.0 -3,-5 0.2535 8 13.5 ALTERNATIVE:2 ENSMUSG00000020063 Sirt1 ENSMUST00000146028 ENSMUSP00000117819 TRANSLATION nonsense_mediated_decay start - 5 140.0 9.0 2.0 0.0 48.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020063 Sirt1 ENSMUST00000131371 - NO_TRANSLATION retained_intron ENSMUSG00000001666 Ddt ENSMUST00000001716 ENSMUSP00000001716 TRANSLATION protein_coding - CCDS23930.1 1 118.0 0.0 3.08 29.3 173.1 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000001666 Ddt ENSMUST00000172820 ENSMUSP00000134561 TRANSLATION protein_coding - - 2 73.0 0.0 1.75 0.0 101.3 0.0 -4,-7 0.0 4 5.034 MINOR ENSMUSG00000000711 Rab5b ENSMUST00000220593 - NO_TRANSLATION retained_intron ENSMUSG00000000711 Rab5b ENSMUST00000000727 ENSMUSP00000000727 TRANSLATION protein_coding - CCDS24287.1 1 215.0 22.0 4.4 27.9 206.4 0.0 -4,-2 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000025369 Smarcc2 ENSMUST00000026433 ENSMUSP00000026433 TRANSLATION protein_coding - CCDS24278.1 1 1099.0 1.0 12.35 0.0 1019.4 0.0 -4,-5 0.5955 14 8.0 ALTERNATIVE:2 ENSMUSG00000025369 Smarcc2 ENSMUST00000099131 ENSMUSP00000096734 TRANSLATION protein_coding - CCDS48726.1 1 1130.0 1.0 12.35 0.0 1019.4 0.0 -4,-5 1.0 15 8.0 PRINCIPAL:2 ENSMUSG00000025369 Smarcc2 ENSMUST00000105235 ENSMUSP00000100868 TRANSLATION protein_coding - CCDS48727.1 1 1213.0 1.0 12.35 0.0 1019.4 0.0 -4,-5 0.5753 14 8.0 ALTERNATIVE:2 ENSMUSG00000025369 Smarcc2 ENSMUST00000217751 - NO_TRANSLATION retained_intron ENSMUSG00000025369 Smarcc2 ENSMUST00000218228 ENSMUSP00000151333 TRANSLATION protein_coding - - 5 142.0 1.0 3.5 0.0 255.6 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000025369 Smarcc2 ENSMUST00000220384 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020246 Hcfc2 ENSMUST00000160845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020246 Hcfc2 ENSMUST00000020478 ENSMUSP00000020478 TRANSLATION protein_coding - CCDS36014.1 5 722.0 0.0 5.324 0.0 79.2 0.0 -4,0 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000020246 Hcfc2 ENSMUST00000160681 ENSMUSP00000124489 TRANSLATION protein_coding start - 1 261.0 0.0 2.13 0.0 0.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000020246 Hcfc2 ENSMUST00000162422 ENSMUSP00000124472 TRANSLATION nonsense_mediated_decay start - 3 145.0 0.0 1.48 0.0 21.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000107748 Or6c63-ps1 ENSMUST00000204515 ENSMUSP00000154204 TRANSLATION protein_coding - - 5 325.0 0.0 1.0 0.0 174.0 0.0 -4,-7 0.7936 - 12.0 PRINCIPAL:1 ENSMUSG00000095002 Or6c66 ENSMUST00000204979 ENSMUSP00000144716 TRANSLATION protein_coding - CCDS24325.1 2 311.0 0.0 1.0 11.5 175.5 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095002 Or6c66 ENSMUST00000079810 ENSMUSP00000078739 TRANSLATION protein_coding - CCDS24325.1 - 311.0 0.0 1.0 11.5 175.5 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069584 Gm10272 ENSMUST00000092371 ENSMUSP00000090025 TRANSLATION protein_coding - - - 110.0 0.0 0.0 6.3 37.1 0.0 -4,-6 0.8872 - 8.0 PRINCIPAL:1 ENSMUSG00000035923 Myf6 ENSMUST00000044210 ENSMUSP00000047529 TRANSLATION protein_coding - CCDS24162.1 1 242.0 0.0 0.6 17.2 129.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000000730 Dnmt3l ENSMUST00000135316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000730 Dnmt3l ENSMUST00000151242 ENSMUSP00000116970 TRANSLATION protein_coding - CCDS23962.1 1 421.0 12.0 8.25 0.4 0.0 0.0 -4,-5 0.8711 - 12.0 PRINCIPAL:1 ENSMUSG00000000730 Dnmt3l ENSMUST00000144446 - NO_TRANSLATION retained_intron ENSMUSG00000000730 Dnmt3l ENSMUST00000131825 ENSMUSP00000119571 TRANSLATION protein_coding - CCDS70061.1 1 126.0 0.0 2.75 0.1 0.0 0.0 -4,-7 0.1306 - 0.0 MINOR ENSMUSG00000000730 Dnmt3l ENSMUST00000000746 ENSMUSP00000000746 TRANSLATION protein_coding - CCDS23962.1 1 421.0 12.0 8.25 0.4 0.0 0.0 -4,-5 0.8711 - 12.0 PRINCIPAL:1 ENSMUSG00000000730 Dnmt3l ENSMUST00000123940 ENSMUSP00000123015 TRANSLATION protein_coding - CCDS70061.1 1 126.0 0.0 2.75 0.1 0.0 0.0 -4,-7 0.1306 - 0.0 MINOR ENSMUSG00000000730 Dnmt3l ENSMUST00000139539 ENSMUSP00000117827 TRANSLATION protein_coding - CCDS70061.1 1 126.0 0.0 2.75 0.1 0.0 0.0 -4,-7 0.1306 - 0.0 MINOR ENSMUSG00000000730 Dnmt3l ENSMUST00000138785 ENSMUSP00000121562 TRANSLATION protein_coding - CCDS23962.1 1 421.0 12.0 8.25 0.4 0.0 0.0 -4,-5 0.8711 - 12.0 PRINCIPAL:1 ENSMUSG00000050478 Or6c214 ENSMUST00000213379 ENSMUSP00000149172 TRANSLATION protein_coding - CCDS24334.1 5 311.0 0.0 1.0 9.4 152.9 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050478 Or6c214 ENSMUST00000059038 ENSMUSP00000049924 TRANSLATION protein_coding - CCDS24334.1 - 311.0 0.0 1.0 9.4 152.9 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050478 Or6c214 ENSMUST00000217106 ENSMUSP00000150657 TRANSLATION protein_coding - CCDS24334.1 5 311.0 0.0 1.0 9.4 152.9 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020180 Snrpd3 ENSMUST00000020397 ENSMUSP00000020397 TRANSLATION protein_coding - CCDS23926.1 1 126.0 0.0 2.75 34.9 57.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020180 Snrpd3 ENSMUST00000191097 - NO_TRANSLATION retained_intron ENSMUSG00000020180 Snrpd3 ENSMUST00000220229 ENSMUSP00000151655 TRANSLATION protein_coding - - 3 84.0 0.0 1.5 0.0 38.6 0.0 -4,-5 0.0 2 7.314 MINOR ENSMUSG00000096687 Mfsd4b4 ENSMUST00000239131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096687 Mfsd4b4 ENSMUST00000178045 ENSMUSP00000136934 TRANSLATION protein_coding - - 3 503.0 0.0 0.0 0.0 48.2 13.0 -4,-6 0.7371 - 6.0 PRINCIPAL:1 ENSMUSG00000096687 Mfsd4b4 ENSMUST00000239084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096687 Mfsd4b4 ENSMUST00000178563 ENSMUSP00000137516 TRANSLATION protein_coding - - 5 457.0 0.0 0.0 0.0 0.0 12.0 -1,-3 0.0114 - 0.0 MINOR ENSMUSG00000090841 Myl6 ENSMUST00000219554 - NO_TRANSLATION retained_intron ENSMUSG00000090841 Myl6 ENSMUST00000218127 ENSMUSP00000151693 TRANSLATION protein_coding - - 2 151.0 17.0 3.91 33.4 27.0 0.0 -4,-5 0.8716 6 22.0 PRINCIPAL:1 ENSMUSG00000090841 Myl6 ENSMUST00000217776 ENSMUSP00000151786 TRANSLATION protein_coding - - 3 158.0 15.0 3.78 0.0 27.0 0.0 -4,-5 0.0776 6 16.41 MINOR ENSMUSG00000090841 Myl6 ENSMUST00000220427 ENSMUSP00000151914 TRANSLATION nonsense_mediated_decay - - 3 38.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090841 Myl6 ENSMUST00000220307 ENSMUSP00000151991 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090841 Myl6 ENSMUST00000218713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090841 Myl6 ENSMUST00000218170 - NO_TRANSLATION retained_intron ENSMUSG00000090841 Myl6 ENSMUST00000164181 ENSMUSP00000128803 TRANSLATION protein_coding - CCDS48728.1 1 151.0 15.0 3.91 33.4 27.0 0.0 -4,-5 1.0 7 20.668 MINOR ENSMUSG00000090841 Myl6 ENSMUST00000218813 - NO_TRANSLATION retained_intron ENSMUSG00000090841 Myl6 ENSMUST00000219655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090841 Myl6 ENSMUST00000217913 - NO_TRANSLATION retained_intron ENSMUSG00000090841 Myl6 ENSMUST00000217733 ENSMUSP00000151236 TRANSLATION protein_coding - - 1 152.0 14.0 3.712 3.1 27.0 0.0 -4,-5 0.2313 6 15.866 MINOR ENSMUSG00000090841 Myl6 ENSMUST00000219236 ENSMUSP00000151915 TRANSLATION protein_coding - - 2 158.0 15.0 3.78 0.0 27.0 0.0 -4,-5 0.0776 6 16.41 MINOR ENSMUSG00000090841 Myl6 ENSMUST00000219100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090841 Myl6 ENSMUST00000217969 ENSMUSP00000151250 TRANSLATION protein_coding - - 2 139.0 12.0 3.41 0.0 0.0 0.0 -4,-5 0.0004 6 7.662 MINOR ENSMUSG00000036168 Ccdc38 ENSMUST00000092215 ENSMUSP00000089860 TRANSLATION protein_coding - CCDS24127.1 1 563.0 0.0 0.648 0.3 89.8 0.0 -4,-5 0.431 - 8.0 ALTERNATIVE:2 ENSMUSG00000036168 Ccdc38 ENSMUST00000128786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036168 Ccdc38 ENSMUST00000132214 ENSMUSP00000150407 TRANSLATION protein_coding - - 1 524.0 0.0 0.648 0.0 89.8 0.0 -4,-6 0.8012 - 8.0 PRINCIPAL:2 ENSMUSG00000036168 Ccdc38 ENSMUST00000139354 - NO_TRANSLATION retained_intron ENSMUSG00000036168 Ccdc38 ENSMUST00000140460 - NO_TRANSLATION retained_intron ENSMUSG00000020234 Tektip1 ENSMUST00000124512 - NO_TRANSLATION retained_intron ENSMUSG00000020234 Tektip1 ENSMUST00000020456 ENSMUSP00000020456 TRANSLATION protein_coding - CCDS24056.1 1 206.0 0.0 0.0 5.8 340.3 0.0 -4,-6 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000020234 Tektip1 ENSMUST00000130762 - NO_TRANSLATION retained_intron ENSMUSG00000020234 Tektip1 ENSMUST00000131736 ENSMUSP00000123068 TRANSLATION protein_coding start - 1 145.0 0.0 0.0 0.0 148.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000095075 Or6c6 ENSMUST00000213970 ENSMUSP00000150951 TRANSLATION protein_coding - CCDS24315.1 5 314.0 0.0 1.0 12.5 164.6 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095075 Or6c6 ENSMUST00000077024 ENSMUSP00000076282 TRANSLATION protein_coding - CCDS24315.1 - 314.0 0.0 1.0 12.5 164.6 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042774 Or7a37 ENSMUST00000204849 ENSMUSP00000145454 TRANSLATION protein_coding - CCDS23972.1 - 309.0 0.0 1.0 9.8 164.4 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042774 Or7a37 ENSMUST00000205193 ENSMUSP00000145073 TRANSLATION protein_coding - CCDS23972.1 5 309.0 0.0 1.0 9.8 164.4 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042774 Or7a37 ENSMUST00000039718 ENSMUSP00000038992 TRANSLATION protein_coding - CCDS23972.1 2 309.0 0.0 1.0 9.8 164.4 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000112039 Brcc3dc ENSMUST00000218023 ENSMUSP00000151516 TRANSLATION protein_coding - - - 291.0 3.0 0.5 2.6 142.0 0.0 -4,-7 0.9134 - 16.0 PRINCIPAL:1 ENSMUSG00000020077 Srgn ENSMUST00000162161 ENSMUSP00000125533 TRANSLATION protein_coding - CCDS23889.1 3 152.0 0.0 1.4 0.0 221.2 0.0 4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000020077 Srgn ENSMUST00000159020 ENSMUSP00000125385 TRANSLATION protein_coding stop - 3 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020077 Srgn ENSMUST00000160643 ENSMUSP00000124365 TRANSLATION protein_coding stop - 5 27.0 0.0 0.4 0.0 30.1 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000020077 Srgn ENSMUST00000162956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020077 Srgn ENSMUST00000020271 ENSMUSP00000020271 TRANSLATION protein_coding - CCDS23889.1 1 152.0 0.0 1.4 0.0 221.2 0.0 4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000020077 Srgn ENSMUST00000160987 ENSMUSP00000125622 TRANSLATION protein_coding - CCDS23889.1 3 152.0 0.0 1.4 0.0 221.2 0.0 4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000006724 Cyp27b1 ENSMUST00000172069 ENSMUSP00000127367 TRANSLATION nonsense_mediated_decay - - 1 135.0 0.0 0.4 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000006724 Cyp27b1 ENSMUST00000165764 ENSMUSP00000130005 TRANSLATION protein_coding - CCDS24224.2 1 507.0 27.0 6.08 5.7 320.8 0.0 -4,0 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000006724 Cyp27b1 ENSMUST00000171868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020102 Slc16a7 ENSMUST00000105257 ENSMUSP00000100892 TRANSLATION protein_coding - CCDS24218.1 1 484.0 0.0 3.43 2.6 122.5 13.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000020102 Slc16a7 ENSMUST00000209246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020102 Slc16a7 ENSMUST00000210069 ENSMUSP00000147861 TRANSLATION protein_coding stop - 2 55.0 0.0 1.0 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000020102 Slc16a7 ENSMUST00000063318 ENSMUSP00000065433 TRANSLATION protein_coding - CCDS24218.1 1 484.0 0.0 3.43 2.6 122.5 13.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000020102 Slc16a7 ENSMUST00000211781 ENSMUSP00000147968 TRANSLATION protein_coding - CCDS24218.1 1 484.0 0.0 3.43 2.6 122.5 13.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000020102 Slc16a7 ENSMUST00000210780 ENSMUSP00000147560 TRANSLATION protein_coding - CCDS24218.1 5 484.0 0.0 3.43 2.6 122.5 13.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000019837 Gtf3c6 ENSMUST00000217457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019837 Gtf3c6 ENSMUST00000019982 ENSMUSP00000019982 TRANSLATION protein_coding - - 1 228.0 0.0 3.68 0.1 55.6 0.0 -4,-5 0.7392 - 8.0 PRINCIPAL:4 ENSMUSG00000019837 Gtf3c6 ENSMUST00000217141 ENSMUSP00000148989 TRANSLATION protein_coding stop - 3 66.0 0.0 2.0 0.0 30.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019837 Gtf3c6 ENSMUST00000216847 ENSMUSP00000150276 TRANSLATION protein_coding stop - 3 101.0 0.0 2.6 0.0 30.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019837 Gtf3c6 ENSMUST00000217537 ENSMUSP00000151091 TRANSLATION protein_coding - CCDS23794.1 1 227.0 0.0 3.68 0.1 55.6 0.0 -4,-5 0.6058 - 8.0 ALTERNATIVE:2 ENSMUSG00000019837 Gtf3c6 ENSMUST00000213628 ENSMUSP00000150763 TRANSLATION protein_coding stop - 3 127.0 0.0 2.6 0.0 30.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039891 Txlnb ENSMUST00000037964 ENSMUSP00000044936 TRANSLATION protein_coding - CCDS35851.1 1 685.0 0.0 5.95 0.4 393.1 0.0 -4,-5 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000039891 Txlnb ENSMUST00000175676 - NO_TRANSLATION retained_intron ENSMUSG00000097878 Gm8764 ENSMUST00000181166 ENSMUSP00000138007 TRANSLATION protein_coding stop - 3 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - -2.0 MINOR ENSMUSG00000097878 Gm8764 ENSMUST00000181179 ENSMUSP00000137930 TRANSLATION protein_coding - - 2 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000019795 Pcmt1 ENSMUST00000161428 ENSMUSP00000123758 TRANSLATION protein_coding start - 1 177.0 21.0 4.33 0.0 199.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000019795 Pcmt1 ENSMUST00000162606 ENSMUSP00000123866 TRANSLATION protein_coding - - 1 228.0 24.0 5.83 10.5 289.5 0.0 -4,-6 0.9558 14 17.0 ALTERNATIVE:1 ENSMUSG00000019795 Pcmt1 ENSMUST00000162682 ENSMUSP00000124246 TRANSLATION protein_coding stop - 3 65.0 10.0 2.08 0.0 81.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019795 Pcmt1 ENSMUST00000160517 - NO_TRANSLATION retained_intron ENSMUSG00000019795 Pcmt1 ENSMUST00000159917 ENSMUSP00000124932 TRANSLATION protein_coding - - 1 227.0 24.0 5.83 10.5 289.5 0.0 -4,-6 1.0 14 17.0 PRINCIPAL:4 ENSMUSG00000019795 Pcmt1 ENSMUST00000159835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019795 Pcmt1 ENSMUST00000159977 ENSMUSP00000124135 TRANSLATION protein_coding stop - 5 23.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019795 Pcmt1 ENSMUST00000163085 ENSMUSP00000125144 TRANSLATION protein_coding - - 1 227.0 24.0 5.83 10.5 289.5 0.0 -4,-6 1.0 14 17.0 PRINCIPAL:4 ENSMUSG00000019795 Pcmt1 ENSMUST00000161123 ENSMUSP00000124100 TRANSLATION nonsense_mediated_decay - - 5 66.0 0.0 1.85 0.0 46.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000019795 Pcmt1 ENSMUST00000160250 - NO_TRANSLATION retained_intron ENSMUSG00000025347 Tmt1b ENSMUST00000026398 ENSMUSP00000026398 TRANSLATION protein_coding - CCDS24301.1 1 244.0 17.0 2.0 14.9 74.7 0.0 2,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000040415 Dtx3 ENSMUST00000130855 ENSMUSP00000114776 TRANSLATION protein_coding - - 5 350.0 8.0 2.07 8.2 45.4 0.0 -4,-7 0.8021 8 17.0 ALTERNATIVE:1 ENSMUSG00000040415 Dtx3 ENSMUST00000125254 - NO_TRANSLATION retained_intron ENSMUSG00000040415 Dtx3 ENSMUST00000137151 ENSMUSP00000115302 TRANSLATION protein_coding - - 3 34.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - 2.172 MINOR ENSMUSG00000040415 Dtx3 ENSMUST00000116229 ENSMUSP00000111937 TRANSLATION protein_coding - - 1 395.0 8.0 1.32 0.0 45.4 0.0 -4,-2 0.0302 7 11.828 MINOR ENSMUSG00000040415 Dtx3 ENSMUST00000144322 ENSMUSP00000116510 TRANSLATION protein_coding stop - 3 116.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000040415 Dtx3 ENSMUST00000038217 ENSMUSP00000044627 TRANSLATION protein_coding - CCDS36078.1 1 347.0 8.0 2.07 8.2 45.4 0.0 -4,-2 1.0 8 17.0 PRINCIPAL:4 ENSMUSG00000020007 Il20ra ENSMUST00000020185 ENSMUSP00000020185 TRANSLATION protein_coding - CCDS23718.1 1 546.0 0.0 5.0 0.4 179.9 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020007 Il20ra ENSMUST00000217389 ENSMUSP00000150417 TRANSLATION nonsense_mediated_decay - - 1 105.0 0.0 1.0 0.0 52.1 0.0 3,-1 0.0 - -2.0 MINOR ENSMUSG00000020325 Fstl3 ENSMUST00000020575 ENSMUSP00000020575 TRANSLATION protein_coding - CCDS23990.1 1 256.0 0.0 3.2 2.6 106.6 0.0 2,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000020325 Fstl3 ENSMUST00000170380 - NO_TRANSLATION retained_intron ENSMUSG00000020325 Fstl3 ENSMUST00000168798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033444 Specc1l ENSMUST00000218876 - NO_TRANSLATION retained_intron ENSMUSG00000033444 Specc1l ENSMUST00000219387 ENSMUSP00000151552 TRANSLATION protein_coding stop - 2 120.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 4 -2.0 MINOR ENSMUSG00000033444 Specc1l ENSMUST00000105421 ENSMUSP00000101061 TRANSLATION protein_coding - CCDS48598.1 5 1135.0 0.0 3.315 0.0 71.6 0.0 -4,-7 0.4347 33 12.0 MINOR ENSMUSG00000033444 Specc1l ENSMUST00000219430 - NO_TRANSLATION retained_intron ENSMUSG00000033444 Specc1l ENSMUST00000040105 ENSMUSP00000045099 TRANSLATION protein_coding - CCDS48598.1 5 1135.0 0.0 3.315 0.0 71.6 0.0 -4,-7 0.4347 33 12.0 MINOR ENSMUSG00000033444 Specc1l ENSMUST00000218766 ENSMUSP00000151322 TRANSLATION protein_coding - CCDS48599.1 1 1118.0 0.0 3.315 17.0 71.6 0.0 -4,-7 1.0 33 16.0 PRINCIPAL:1 ENSMUSG00000033444 Specc1l ENSMUST00000218644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035773 Kiss1r ENSMUST00000219745 ENSMUSP00000151936 TRANSLATION protein_coding - - 1 312.0 0.0 2.4 0.0 88.7 6.0 -4,-7 0.007 - 6.312 MINOR ENSMUSG00000035773 Kiss1r ENSMUST00000045529 ENSMUSP00000040516 TRANSLATION protein_coding - CCDS23998.1 1 396.0 0.0 3.02 2.5 162.8 8.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000035773 Kiss1r ENSMUST00000219883 - NO_TRANSLATION retained_intron ENSMUSG00000003227 Edar ENSMUST00000003312 ENSMUSP00000003312 TRANSLATION protein_coding - CCDS23862.1 1 448.0 0.0 0.0 13.4 0.0 0.0 1,-3 1.0 - 4.0 PRINCIPAL:1 ENSMUSG00000094314 Gm4301 ENSMUST00000186197 ENSMUSP00000140999 TRANSLATION protein_coding - - - 286.0 0.0 0.6 0.0 48.2 0.0 -4,-5 0.7797 - 12.0 PRINCIPAL:1 ENSMUSG00000019997 Ccn2 ENSMUST00000176228 ENSMUSP00000135147 TRANSLATION protein_coding - - 2 293.0 3.0 2.13 0.0 111.0 0.0 4,-1 0.0657 7 11.322 MINOR ENSMUSG00000019997 Ccn2 ENSMUST00000129142 ENSMUSP00000135212 TRANSLATION protein_coding stop - 2 80.0 0.0 0.0 0.0 44.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019997 Ccn2 ENSMUST00000020171 ENSMUSP00000020171 TRANSLATION protein_coding - CCDS23751.1 1 348.0 3.0 2.13 0.0 172.3 0.0 4,-1 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000019889 Ptprk ENSMUST00000220404 - NO_TRANSLATION retained_intron ENSMUSG00000019889 Ptprk ENSMUST00000218584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019889 Ptprk ENSMUST00000219107 - NO_TRANSLATION retained_intron ENSMUSG00000019889 Ptprk ENSMUST00000166468 ENSMUSP00000126279 TRANSLATION protein_coding - CCDS35874.1 2 1457.0 15.0 22.496 6.5 719.7 1.0 1,-3 1.0 19 16.0 PRINCIPAL:4 ENSMUSG00000019889 Ptprk ENSMUST00000218633 - NO_TRANSLATION retained_intron ENSMUSG00000019889 Ptprk ENSMUST00000219478 - NO_TRANSLATION retained_intron ENSMUSG00000019889 Ptprk ENSMUST00000219621 ENSMUSP00000151294 TRANSLATION protein_coding start - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000019889 Ptprk ENSMUST00000218359 ENSMUSP00000151986 TRANSLATION protein_coding - - 1 1445.0 15.0 22.496 6.5 719.7 1.0 1,-3 0.9173 19 16.0 ALTERNATIVE:1 ENSMUSG00000019889 Ptprk ENSMUST00000218276 ENSMUSP00000151866 TRANSLATION protein_coding - - 1 1471.0 15.0 22.496 5.8 719.7 1.0 1,-3 0.846 19 15.746 ALTERNATIVE:1 ENSMUSG00000019889 Ptprk ENSMUST00000220357 ENSMUSP00000151493 TRANSLATION protein_coding start/stop - 5 282.0 10.0 6.528 0.0 203.7 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000019889 Ptprk ENSMUST00000219761 - NO_TRANSLATION retained_intron ENSMUSG00000038160 Atg5 ENSMUST00000039286 ENSMUSP00000044769 TRANSLATION protein_coding - CCDS23824.1 1 275.0 0.0 6.75 34.7 207.3 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000038160 Atg5 ENSMUST00000217412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034707 Gns ENSMUST00000219847 - NO_TRANSLATION retained_intron ENSMUSG00000034707 Gns ENSMUST00000220350 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034707 Gns ENSMUST00000040344 ENSMUSP00000043167 TRANSLATION protein_coding - CCDS24210.1 1 544.0 5.0 13.48 4.3 238.3 0.0 1,-3 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000034707 Gns ENSMUST00000219505 ENSMUSP00000152016 TRANSLATION nonsense_mediated_decay start - 3 165.0 1.0 3.58 0.0 63.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000034707 Gns ENSMUST00000219851 ENSMUSP00000151684 TRANSLATION nonsense_mediated_decay - - 5 99.0 2.0 0.6 0.0 0.0 0.0 1,-3 0.0037 - -2.0 MINOR ENSMUSG00000034707 Gns ENSMUST00000219531 - NO_TRANSLATION retained_intron ENSMUSG00000034707 Gns ENSMUST00000219580 - NO_TRANSLATION retained_intron ENSMUSG00000034707 Gns ENSMUST00000217712 - NO_TRANSLATION retained_intron ENSMUSG00000034707 Gns ENSMUST00000219216 - NO_TRANSLATION retained_intron ENSMUSG00000034707 Gns ENSMUST00000219249 ENSMUSP00000151434 TRANSLATION nonsense_mediated_decay - - 3 91.0 2.0 1.1 0.0 0.0 0.0 1,-3 0.0036 - -2.0 MINOR ENSMUSG00000096220 Or6c205 ENSMUST00000214109 ENSMUSP00000150345 TRANSLATION protein_coding - CCDS48733.1 5 312.0 0.0 1.0 12.5 174.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096220 Or6c205 ENSMUST00000097163 ENSMUSP00000132845 TRANSLATION protein_coding - CCDS48733.1 - 312.0 0.0 1.0 12.5 174.5 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062075 Lmnb2 ENSMUST00000105332 ENSMUSP00000100969 TRANSLATION protein_coding - CCDS83733.1 1 474.0 0.0 5.166 0.0 231.7 0.0 -4,-5 0.0097 19 2.0 MINOR ENSMUSG00000062075 Lmnb2 ENSMUST00000159094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062075 Lmnb2 ENSMUST00000057623 ENSMUSP00000057291 TRANSLATION protein_coding - - 1 615.0 0.0 9.1 1.1 383.2 0.0 -4,-2 0.8124 30 9.0 PRINCIPAL:2 ENSMUSG00000062075 Lmnb2 ENSMUST00000179022 ENSMUSP00000136524 TRANSLATION protein_coding - CCDS24037.1 1 596.0 0.0 9.1 0.0 383.2 0.0 -4,-7 0.3934 29 8.0 ALTERNATIVE:2 ENSMUSG00000039031 Arhgap18 ENSMUST00000220012 - NO_TRANSLATION retained_intron ENSMUSG00000039031 Arhgap18 ENSMUST00000135866 ENSMUSP00000135783 TRANSLATION protein_coding stop - 2 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039031 Arhgap18 ENSMUST00000039557 ENSMUSP00000044834 TRANSLATION protein_coding - CCDS23757.1 1 663.0 0.0 2.68 9.8 141.8 0.0 -4,-6 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000039031 Arhgap18 ENSMUST00000142284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039031 Arhgap18 ENSMUST00000176060 ENSMUSP00000135030 TRANSLATION protein_coding stop - 3 190.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000090247 Bloc1s1 ENSMUST00000131271 ENSMUSP00000114321 TRANSLATION protein_coding - - 5 121.0 0.0 2.75 0.0 146.3 0.0 -4,-6 0.0104 3 9.492 MINOR ENSMUSG00000090247 Bloc1s1 ENSMUST00000153731 ENSMUSP00000117408 TRANSLATION protein_coding - - 5 94.0 0.0 2.5 0.0 107.7 0.0 -4,-7 0.0003 2 6.678 MINOR ENSMUSG00000090247 Bloc1s1 ENSMUST00000143628 - NO_TRANSLATION retained_intron ENSMUSG00000090247 Bloc1s1 ENSMUST00000026405 ENSMUSP00000026405 TRANSLATION protein_coding - CCDS24299.1 1 125.0 0.0 3.5 30.1 163.1 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000090247 Bloc1s1 ENSMUST00000141320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020099 Unc5b ENSMUST00000218316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020099 Unc5b ENSMUST00000077925 ENSMUSP00000077080 TRANSLATION protein_coding - CCDS23872.1 1 945.0 0.0 12.4325 7.8 480.6 0.0 4,-1 1.0 12 10.0 PRINCIPAL:4 ENSMUSG00000020099 Unc5b ENSMUST00000218637 ENSMUSP00000151251 TRANSLATION protein_coding - - 1 934.0 0.0 12.35 7.1 480.6 0.0 4,-1 0.7735 12 9.632 ALTERNATIVE:1 ENSMUSG00000004356 Utp20 ENSMUST00000218990 - NO_TRANSLATION retained_intron ENSMUSG00000004356 Utp20 ENSMUST00000220439 - NO_TRANSLATION retained_intron ENSMUSG00000004356 Utp20 ENSMUST00000220275 - NO_TRANSLATION retained_intron ENSMUSG00000004356 Utp20 ENSMUST00000220188 ENSMUSP00000151748 TRANSLATION protein_coding stop - 3 201.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004356 Utp20 ENSMUST00000219662 ENSMUSP00000152020 TRANSLATION nonsense_mediated_decay start - 3 141.0 0.0 0.0 0.0 93.7 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000004356 Utp20 ENSMUST00000218967 ENSMUSP00000151292 TRANSLATION protein_coding stop - 3 162.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004356 Utp20 ENSMUST00000004470 ENSMUSP00000004470 TRANSLATION protein_coding - CCDS48667.1 5 2789.0 0.0 0.0 2.2 585.3 0.0 -4,-7 1.0 29 7.0 PRINCIPAL:1 ENSMUSG00000019779 Frk ENSMUST00000215594 - NO_TRANSLATION retained_intron ENSMUSG00000019779 Frk ENSMUST00000170771 ENSMUSP00000130289 TRANSLATION protein_coding - CCDS23781.1 1 512.0 18.0 7.0 10.3 462.4 0.0 -3,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000019779 Frk ENSMUST00000019913 ENSMUSP00000019913 TRANSLATION protein_coding - CCDS23781.1 1 512.0 18.0 7.0 10.3 462.4 0.0 -3,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000019779 Frk ENSMUST00000215144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045912 C2cd4c ENSMUST00000059699 ENSMUSP00000059433 TRANSLATION protein_coding - CCDS23979.1 1 419.0 0.0 0.5 6.0 31.0 0.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000045912 C2cd4c ENSMUST00000178228 ENSMUSP00000136013 TRANSLATION protein_coding - CCDS23979.1 1 419.0 0.0 0.5 6.0 31.0 0.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000000902 Smarcb1 ENSMUST00000140408 - NO_TRANSLATION retained_intron ENSMUSG00000000902 Smarcb1 ENSMUST00000140388 ENSMUSP00000123093 TRANSLATION nonsense_mediated_decay - - 5 78.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000000902 Smarcb1 ENSMUST00000133189 - NO_TRANSLATION retained_intron ENSMUSG00000000902 Smarcb1 ENSMUST00000000925 ENSMUSP00000000925 TRANSLATION protein_coding - CCDS23936.1 1 385.0 0.0 8.16 21.0 0.0 0.0 -4,-6 1.0 6 9.48 PRINCIPAL:4 ENSMUSG00000000902 Smarcb1 ENSMUST00000121304 ENSMUSP00000112463 TRANSLATION protein_coding - CCDS48602.1 1 376.0 0.0 7.83 24.0 0.0 0.0 -4,-5 0.9798 6 9.34 ALTERNATIVE:1 ENSMUSG00000000902 Smarcb1 ENSMUST00000146555 ENSMUSP00000115388 TRANSLATION nonsense_mediated_decay start - 5 55.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0012 3 -2.0 MINOR ENSMUSG00000040624 Plekhg1 ENSMUST00000238840 - NO_TRANSLATION retained_intron ENSMUSG00000040624 Plekhg1 ENSMUST00000144543 - NO_TRANSLATION retained_intron ENSMUSG00000040624 Plekhg1 ENSMUST00000137111 - NO_TRANSLATION retained_intron ENSMUSG00000040624 Plekhg1 ENSMUST00000131525 - NO_TRANSLATION retained_intron ENSMUSG00000040624 Plekhg1 ENSMUST00000239159 ENSMUSP00000159056 TRANSLATION protein_coding - - - 1465.0 0.0 8.03 0.0 151.2 0.0 -4,0 0.3277 17 8.0 ALTERNATIVE:2 ENSMUSG00000040624 Plekhg1 ENSMUST00000120274 ENSMUSP00000114056 TRANSLATION protein_coding - CCDS56671.1 5 1390.0 0.0 8.03 0.0 151.2 0.0 -4,-6 1.0 17 8.0 PRINCIPAL:2 ENSMUSG00000040624 Plekhg1 ENSMUST00000136671 ENSMUSP00000119950 TRANSLATION protein_coding start - 1 1446.0 0.0 8.03 0.0 151.2 0.0 -4,-7 0.3061 17 -2.0 MINOR ENSMUSG00000040624 Plekhg1 ENSMUST00000042438 ENSMUSP00000040495 TRANSLATION protein_coding - CCDS56671.1 1 1390.0 0.0 8.03 0.0 151.2 0.0 -4,-6 1.0 17 8.0 PRINCIPAL:2 ENSMUSG00000040624 Plekhg1 ENSMUST00000141367 ENSMUSP00000116652 TRANSLATION nonsense_mediated_decay start - 3 150.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040624 Plekhg1 ENSMUST00000154727 ENSMUSP00000122131 TRANSLATION protein_coding start - 5 1213.0 0.0 7.5 0.0 113.5 0.0 -4,-5 0.0342 13 -2.0 MINOR ENSMUSG00000019857 Asf1a ENSMUST00000219533 - NO_TRANSLATION retained_intron ENSMUSG00000019857 Asf1a ENSMUST00000218025 ENSMUSP00000151630 TRANSLATION protein_coding start - 5 118.0 0.0 2.12 0.0 149.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000019857 Asf1a ENSMUST00000219271 ENSMUSP00000151324 TRANSLATION protein_coding - - 5 134.0 0.0 2.0 0.1 120.3 0.0 -4,-5 0.0 2 1.998 MINOR ENSMUSG00000019857 Asf1a ENSMUST00000020004 ENSMUSP00000020004 TRANSLATION protein_coding - CCDS23847.1 1 204.0 0.0 4.0 29.5 239.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000019857 Asf1a ENSMUST00000219282 ENSMUSP00000151729 TRANSLATION protein_coding - - 5 134.0 0.0 2.0 0.1 120.3 0.0 -4,-5 0.0 2 1.998 MINOR ENSMUSG00000019857 Asf1a ENSMUST00000218043 - NO_TRANSLATION retained_intron ENSMUSG00000020219 Timm13 ENSMUST00000218149 - NO_TRANSLATION retained_intron ENSMUSG00000020219 Timm13 ENSMUST00000219896 ENSMUSP00000151696 TRANSLATION protein_coding - - 3 80.0 0.0 1.75 0.0 75.4 0.0 -4,-5 0.0004 4 9.456 MINOR ENSMUSG00000020219 Timm13 ENSMUST00000020440 ENSMUSP00000020440 TRANSLATION protein_coding - CCDS35989.1 1 95.0 0.0 2.25 14.0 94.5 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000020219 Timm13 ENSMUST00000218481 ENSMUSP00000151557 TRANSLATION protein_coding - - 3 75.0 0.0 1.35 0.0 50.9 0.0 -4,-5 0.0 2 6.834 MINOR ENSMUSG00000019990 Pde7b ENSMUST00000166147 - NO_TRANSLATION retained_intron ENSMUSG00000019990 Pde7b ENSMUST00000164195 ENSMUSP00000126913 TRANSLATION protein_coding - - 5 440.0 6.0 7.682 0.0 229.4 0.0 -4,-6 0.0258 3 10.098 MINOR ENSMUSG00000019990 Pde7b ENSMUST00000217240 - NO_TRANSLATION retained_intron ENSMUSG00000019990 Pde7b ENSMUST00000170265 ENSMUSP00000126324 TRANSLATION protein_coding - - 5 459.0 6.0 8.632 0.1 256.2 0.0 -4,-5 0.0735 3 14.0 MINOR ENSMUSG00000019990 Pde7b ENSMUST00000020165 ENSMUSP00000020165 TRANSLATION protein_coding - CCDS35859.1 1 446.0 6.0 8.632 19.9 256.2 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:4 ENSMUSG00000019990 Pde7b ENSMUST00000170683 - NO_TRANSLATION retained_intron ENSMUSG00000019990 Pde7b ENSMUST00000169404 ENSMUSP00000132378 TRANSLATION protein_coding - CCDS83686.1 5 498.0 6.0 8.632 18.2 256.2 0.0 -4,-6 0.9053 3 17.64 ALTERNATIVE:1 ENSMUSG00000019990 Pde7b ENSMUST00000169016 ENSMUSP00000130596 TRANSLATION nonsense_mediated_decay - - 1 116.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000063715 Or6c69 ENSMUST00000213618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063715 Or6c69 ENSMUST00000213438 ENSMUSP00000149515 TRANSLATION protein_coding - CCDS24343.1 5 312.0 0.0 1.0 12.5 168.4 5.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063715 Or6c69 ENSMUST00000071605 ENSMUSP00000071534 TRANSLATION protein_coding - CCDS24343.1 - 312.0 0.0 1.0 12.5 168.4 5.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037747 Phyhipl ENSMUST00000162793 ENSMUSP00000124655 TRANSLATION protein_coding stop - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000037747 Phyhipl ENSMUST00000162470 - NO_TRANSLATION retained_intron ENSMUSG00000037747 Phyhipl ENSMUST00000162251 ENSMUSP00000125179 TRANSLATION protein_coding - CCDS48593.1 3 330.0 0.0 0.0 29.2 29.8 0.0 -4,-5 0.9388 9 5.56 ALTERNATIVE:1 ENSMUSG00000037747 Phyhipl ENSMUST00000162571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037747 Phyhipl ENSMUST00000163054 - NO_TRANSLATION retained_intron ENSMUSG00000037747 Phyhipl ENSMUST00000046513 ENSMUSP00000045807 TRANSLATION protein_coding - CCDS23914.1 1 375.0 0.0 0.0 32.7 29.8 0.0 -4,-5 1.0 13 6.0 PRINCIPAL:3 ENSMUSG00000037747 Phyhipl ENSMUST00000160127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037747 Phyhipl ENSMUST00000162144 ENSMUSP00000124828 TRANSLATION protein_coding start/stop - 3 212.0 0.0 0.0 0.0 29.8 0.0 -4,-5 0.0249 9 -2.0 MINOR ENSMUSG00000037747 Phyhipl ENSMUST00000161687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037747 Phyhipl ENSMUST00000159025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040280 Ndufa4l2 ENSMUST00000035735 ENSMUSP00000042185 TRANSLATION protein_coding - CCDS36080.1 1 87.0 0.0 2.5 10.3 100.5 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000040280 Ndufa4l2 ENSMUST00000218492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040280 Ndufa4l2 ENSMUST00000218302 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036446 Lum ENSMUST00000038160 ENSMUSP00000040877 TRANSLATION protein_coding - CCDS24142.1 1 338.0 0.0 2.0 13.3 145.2 0.0 3,-1 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000095593 Gm7138 ENSMUST00000167669 ENSMUSP00000130212 TRANSLATION protein_coding - - - 230.0 0.0 0.0 0.0 51.0 0.0 -4,-6 0.7117 - 6.0 PRINCIPAL:1 ENSMUSG00000058396 Gpr182 ENSMUST00000079692 ENSMUSP00000100882 TRANSLATION protein_coding - CCDS36084.1 1 398.0 0.0 0.4 0.4 137.9 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000091468 Vmn2r82 ENSMUST00000233447 ENSMUSP00000156916 TRANSLATION protein_coding - - - 311.0 3.0 2.166 0.0 56.5 0.0 3,-2 0.0036 - 7.506 MINOR ENSMUSG00000091468 Vmn2r82 ENSMUST00000232824 ENSMUSP00000156858 TRANSLATION protein_coding - - - 519.0 5.0 1.886 0.0 251.1 14.0 3,-2 0.0069 - 8.918 MINOR ENSMUSG00000091468 Vmn2r82 ENSMUST00000233223 ENSMUSP00000156814 TRANSLATION nonsense_mediated_decay - - - 260.0 0.0 1.166 0.0 0.0 0.0 3,-2 0.0017 - -2.0 MINOR ENSMUSG00000091468 Vmn2r82 ENSMUST00000170596 ENSMUSP00000130114 TRANSLATION protein_coding - CCDS48617.1 5 865.0 5.0 2.886 0.1 368.9 14.0 3,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000091468 Vmn2r82 ENSMUST00000233963 ENSMUSP00000156547 TRANSLATION protein_coding - - - 595.0 5.0 2.486 0.0 251.1 14.0 3,-2 0.0085 - 10.166 MINOR ENSMUSG00000091468 Vmn2r82 ENSMUST00000233444 ENSMUSP00000156861 TRANSLATION protein_coding - - - 581.0 3.0 2.566 0.0 174.3 0.0 3,-2 0.0019 - 8.334 MINOR ENSMUSG00000091468 Vmn2r82 ENSMUST00000233445 ENSMUSP00000156464 TRANSLATION nonsense_mediated_decay - - - 530.0 0.0 1.566 0.0 117.8 0.0 3,-2 0.0006 - -2.0 MINOR ENSMUSG00000091468 Vmn2r82 ENSMUST00000233694 ENSMUSP00000156779 TRANSLATION protein_coding - - - 235.0 3.0 1.566 0.0 57.1 0.0 3,-2 0.0005 - 6.258 MINOR ENSMUSG00000112856 Gm4305 ENSMUST00000219159 ENSMUSP00000151398 TRANSLATION protein_coding - - - 286.0 0.0 0.8 0.0 69.7 0.0 -4,-5 0.7789 - 12.0 PRINCIPAL:1 ENSMUSG00000094295 Or10u4 ENSMUST00000216322 ENSMUSP00000150514 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 7.3 185.4 6.0 -2,-5 0.9074 - 10.0 ALTERNATIVE:1 ENSMUSG00000094295 Or10u4 ENSMUST00000167974 ENSMUSP00000131761 TRANSLATION protein_coding - CCDS48734.1 - 320.0 0.0 1.0 6.1 185.4 6.0 -4,-5 1.0 - 9.62 PRINCIPAL:4 ENSMUSG00000038280 Ostm1 ENSMUST00000144806 ENSMUSP00000116534 TRANSLATION protein_coding stop - 5 168.0 0.0 2.95 0.0 194.5 3.0 -4,-7 0.0041 1 -2.0 MINOR ENSMUSG00000038280 Ostm1 ENSMUST00000040718 ENSMUSP00000035516 TRANSLATION protein_coding - CCDS23814.1 1 338.0 0.0 3.8 0.4 279.7 3.0 1,-3 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000038280 Ostm1 ENSMUST00000105497 ENSMUSP00000101136 TRANSLATION protein_coding - - 2 181.0 0.0 2.95 0.0 191.3 3.0 -4,-7 0.0041 1 4.998 MINOR ENSMUSG00000038280 Ostm1 ENSMUST00000147899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038280 Ostm1 ENSMUST00000154048 - NO_TRANSLATION retained_intron ENSMUSG00000075327 Zbtb2 ENSMUST00000215860 - NO_TRANSLATION retained_intron ENSMUSG00000075327 Zbtb2 ENSMUST00000100078 ENSMUSP00000097656 TRANSLATION protein_coding - CCDS56674.1 1 514.0 14.0 1.16 21.7 124.7 0.0 -4,-6 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000075327 Zbtb2 ENSMUST00000100077 ENSMUSP00000097655 TRANSLATION protein_coding - CCDS56674.1 1 514.0 14.0 1.16 21.7 124.7 0.0 -4,-6 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000019763 Rmnd1 ENSMUST00000140660 - NO_TRANSLATION retained_intron ENSMUSG00000019763 Rmnd1 ENSMUST00000148566 - NO_TRANSLATION retained_intron ENSMUSG00000019763 Rmnd1 ENSMUST00000131853 ENSMUSP00000123418 TRANSLATION protein_coding stop - 2 51.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000019763 Rmnd1 ENSMUST00000155172 ENSMUSP00000119033 TRANSLATION protein_coding stop - 2 145.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000019763 Rmnd1 ENSMUST00000126102 ENSMUSP00000114344 TRANSLATION protein_coding stop - 3 77.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000019763 Rmnd1 ENSMUST00000137429 - NO_TRANSLATION retained_intron ENSMUSG00000019763 Rmnd1 ENSMUST00000128434 ENSMUSP00000119195 TRANSLATION protein_coding start - 3 93.0 0.0 2.1 0.0 43.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019763 Rmnd1 ENSMUST00000042251 ENSMUSP00000043355 TRANSLATION protein_coding - CCDS56675.1 1 450.0 0.0 8.08 8.3 160.7 0.0 -2,2 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000019763 Rmnd1 ENSMUST00000156940 - NO_TRANSLATION retained_intron ENSMUSG00000049764 Zfp280b ENSMUST00000218627 ENSMUSP00000152008 TRANSLATION protein_coding stop - 3 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049764 Zfp280b ENSMUST00000061617 ENSMUSP00000056340 TRANSLATION protein_coding - CCDS23942.1 1 534.0 18.0 0.0 0.1 122.8 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000095401 Or6c6c ENSMUST00000216747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095401 Or6c6c ENSMUST00000077312 ENSMUSP00000076540 TRANSLATION protein_coding - CCDS24331.1 - 314.0 0.0 1.0 10.8 162.1 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095401 Or6c6c ENSMUST00000213331 ENSMUSP00000150132 TRANSLATION protein_coding - CCDS24331.1 5 314.0 0.0 1.0 10.8 162.1 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052302 Tbc1d30 ENSMUST00000218111 ENSMUSP00000151497 TRANSLATION nonsense_mediated_decay start - 1 21.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052302 Tbc1d30 ENSMUST00000218688 - NO_TRANSLATION retained_intron ENSMUSG00000052302 Tbc1d30 ENSMUST00000219354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052302 Tbc1d30 ENSMUST00000064107 ENSMUSP00000070488 TRANSLATION protein_coding - CCDS48704.1 1 766.0 0.0 3.595 3.9 265.9 0.0 -4,-7 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000052302 Tbc1d30 ENSMUST00000219179 ENSMUSP00000151922 TRANSLATION protein_coding start/stop - 3 240.0 0.0 0.925 0.0 0.0 0.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000095569 Taar7d ENSMUST00000092657 ENSMUSP00000090327 TRANSLATION protein_coding - CCDS23742.1 - 358.0 0.0 1.0 0.4 188.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075225 Ccdc162 ENSMUST00000159978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075225 Ccdc162 ENSMUST00000160002 - NO_TRANSLATION retained_intron ENSMUSG00000075225 Ccdc162 ENSMUST00000159868 - NO_TRANSLATION retained_intron ENSMUSG00000075225 Ccdc162 ENSMUST00000189488 ENSMUSP00000140774 TRANSLATION protein_coding - - 5 2185.0 0.0 0.0 0.0 197.5 0.0 -4,-5 0.9286 - 2.0 PRINCIPAL:2 ENSMUSG00000075225 Ccdc162 ENSMUST00000187853 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075225 Ccdc162 ENSMUST00000190522 ENSMUSP00000150126 TRANSLATION protein_coding - - 5 595.0 0.0 0.0 0.0 197.5 0.0 -4,-5 0.0972 - 2.0 ALTERNATIVE:2 ENSMUSG00000075225 Ccdc162 ENSMUST00000095227 ENSMUSP00000092852 TRANSLATION protein_coding start - 5 463.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.014 - -2.0 MINOR ENSMUSG00000075225 Ccdc162 ENSMUST00000160751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036009 Mettl25 ENSMUST00000176040 ENSMUSP00000135255 TRANSLATION nonsense_mediated_decay - - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036009 Mettl25 ENSMUST00000176830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036009 Mettl25 ENSMUST00000046638 ENSMUSP00000038665 TRANSLATION protein_coding - - 1 597.0 0.0 1.6105 1.6 104.6 0.0 -4,-5 0.9876 4 13.0 PRINCIPAL:1 ENSMUSG00000036009 Mettl25 ENSMUST00000176924 ENSMUSP00000134888 TRANSLATION nonsense_mediated_decay - - 1 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034813 Grip1 ENSMUST00000148954 ENSMUSP00000118397 TRANSLATION protein_coding - - 5 1075.0 0.0 15.2 2.9 296.8 0.0 -4,-7 0.7174 10 9.226 ALTERNATIVE:2 ENSMUSG00000034813 Grip1 ENSMUST00000041962 ENSMUSP00000042436 TRANSLATION protein_coding - CCDS70112.1 1 1061.0 0.0 15.2 2.7 296.8 0.0 -4,-5 1.0 11 9.096 PRINCIPAL:4 ENSMUSG00000034813 Grip1 ENSMUST00000147598 - NO_TRANSLATION retained_intron ENSMUSG00000034813 Grip1 ENSMUST00000105262 ENSMUSP00000100897 TRANSLATION protein_coding - CCDS70113.1 1 1060.0 0.0 15.2 2.9 296.8 0.0 -4,-7 0.9922 11 9.226 ALTERNATIVE:2 ENSMUSG00000034813 Grip1 ENSMUST00000105261 ENSMUSP00000100896 TRANSLATION protein_coding - CCDS70114.1 1 632.0 0.0 8.7 0.0 162.6 0.0 -4,-2 0.0167 5 0.4 MINOR ENSMUSG00000034813 Grip1 ENSMUST00000077871 ENSMUSP00000077033 TRANSLATION protein_coding - CCDS36071.1 1 1034.0 0.0 15.2 0.0 296.8 0.0 -4,-5 0.4124 11 8.0 MINOR ENSMUSG00000034813 Grip1 ENSMUST00000144959 ENSMUSP00000122323 TRANSLATION protein_coding - - 5 1112.0 0.0 14.7 0.1 296.8 0.0 -4,-7 0.2073 11 6.998 MINOR ENSMUSG00000034813 Grip1 ENSMUST00000147356 ENSMUSP00000115478 TRANSLATION protein_coding - CCDS70111.1 1 1113.0 0.0 14.7 0.0 296.8 0.0 -4,-5 0.2965 11 6.998 MINOR ENSMUSG00000034813 Grip1 ENSMUST00000081260 ENSMUSP00000080016 TRANSLATION nonsense_mediated_decay - - 1 631.0 0.0 8.7 0.0 162.6 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000034813 Grip1 ENSMUST00000238454 ENSMUSP00000158728 TRANSLATION nonsense_mediated_decay - - - 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034813 Grip1 ENSMUST00000130387 ENSMUSP00000123288 TRANSLATION protein_coding - - 5 697.0 0.0 8.7 0.1 162.6 0.0 -4,-2 0.004 5 0.4 MINOR ENSMUSG00000034813 Grip1 ENSMUST00000138410 ENSMUSP00000123234 TRANSLATION protein_coding - CCDS24202.1 1 1127.0 0.0 14.7 4.1 296.8 0.0 -4,-7 0.7762 10 8.998 ALTERNATIVE:2 ENSMUSG00000034813 Grip1 ENSMUST00020183804 ENSMUSP00001091665 TRANSLATION protein_coding - - - 1140.0 0.0 14.7 3.1 296.8 0.0 -4,-5 0.6418 11 8.352 ALTERNATIVE:2 ENSMUSG00000034813 Grip1 ENSMUST00000127787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034813 Grip1 ENSMUST00000144825 ENSMUSP00000121670 TRANSLATION protein_coding - CCDS36072.1 1 1033.0 0.0 15.2 0.0 296.8 0.0 -4,-7 0.4078 11 8.0 MINOR ENSMUSG00000034813 Grip1 ENSMUST00000139352 - NO_TRANSLATION retained_intron ENSMUSG00000034813 Grip1 ENSMUST00000147454 ENSMUSP00000118073 TRANSLATION protein_coding - - 5 1112.0 0.0 14.7 3.0 296.8 0.0 -4,-7 0.6188 11 8.288 ALTERNATIVE:2 ENSMUSG00000034813 Grip1 ENSMUST00000154238 ENSMUSP00000122349 TRANSLATION protein_coding - - 5 712.0 0.0 8.7 0.1 162.6 0.0 -4,-2 0.004 4 0.4 MINOR ENSMUSG00000034813 Grip1 ENSMUST00000238747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019977 Hbs1l ENSMUST00000020153 ENSMUSP00000020153 TRANSLATION protein_coding - - 1 679.0 14.0 13.016 7.1 333.7 0.0 -4,-5 0.7724 30 16.613 ALTERNATIVE:1 ENSMUSG00000019977 Hbs1l ENSMUST00000218850 - NO_TRANSLATION retained_intron ENSMUSG00000019977 Hbs1l ENSMUST00000218032 ENSMUSP00000151421 TRANSLATION protein_coding stop - 5 104.0 0.0 1.516 0.0 62.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019977 Hbs1l ENSMUST00000092674 ENSMUSP00000090344 TRANSLATION protein_coding - CCDS48513.1 1 612.0 0.0 2.516 0.1 69.7 0.0 -4,-5 0.0138 9 0.0 MINOR ENSMUSG00000019977 Hbs1l ENSMUST00000219345 - NO_TRANSLATION retained_intron ENSMUSG00000019977 Hbs1l ENSMUST00000061324 ENSMUSP00000135902 TRANSLATION protein_coding - - 3 140.0 0.0 2.516 0.0 69.7 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000019977 Hbs1l ENSMUST00000218714 ENSMUSP00000151897 TRANSLATION protein_coding stop - 5 162.0 7.0 3.7 0.0 72.7 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000019977 Hbs1l ENSMUST00000218785 - NO_TRANSLATION retained_intron ENSMUSG00000019977 Hbs1l ENSMUST00000219915 ENSMUSP00000151689 TRANSLATION protein_coding - CCDS35862.1 1 682.0 14.0 13.016 8.0 333.7 0.0 -4,-5 1.0 30 17.0 PRINCIPAL:4 ENSMUSG00000019977 Hbs1l ENSMUST00000220392 - NO_TRANSLATION retained_intron ENSMUSG00000019966 Kitl ENSMUST00000219050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019966 Kitl ENSMUST00000105283 ENSMUSP00000100920 TRANSLATION protein_coding - CCDS36046.1 1 273.0 0.0 3.55 10.6 512.5 1.0 1,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019966 Kitl ENSMUST00000130190 ENSMUSP00000123360 TRANSLATION protein_coding stop - 1 160.0 0.0 2.55 0.0 222.6 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000019966 Kitl ENSMUST00000020129 ENSMUSP00000020129 TRANSLATION protein_coding - CCDS83751.1 1 245.0 0.0 3.55 6.8 427.0 1.0 1,-4 0.5682 - 8.682 MINOR ENSMUSG00000019966 Kitl ENSMUST00000219881 - NO_TRANSLATION retained_intron ENSMUSG00000019966 Kitl ENSMUST00000218200 ENSMUSP00000151554 TRANSLATION protein_coding - - 5 56.0 0.0 0.0 0.0 94.9 0.0 2,-2 0.0026 - 0.0 MINOR ENSMUSG00000058806 Col13a1 ENSMUST00000105452 ENSMUSP00000101092 TRANSLATION protein_coding - - 5 709.0 0.0 15.133 0.0 222.2 0.0 -4,-7 0.0907 - 9.75 MINOR ENSMUSG00000058806 Col13a1 ENSMUST00000105453 ENSMUSP00000101093 TRANSLATION protein_coding - CCDS78821.1 2 675.0 0.0 14.833 0.0 217.1 0.0 -4,-7 0.0919 1 8.844 MINOR ENSMUSG00000058806 Col13a1 ENSMUST00000105454 ENSMUSP00000101094 TRANSLATION protein_coding - CCDS35918.1 1 739.0 0.0 15.497 0.4 247.6 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000058806 Col13a1 ENSMUST00000153120 - NO_TRANSLATION retained_intron ENSMUSG00000058806 Col13a1 ENSMUST00000239309 ENSMUSP00000159227 TRANSLATION protein_coding start - - 80.0 0.0 1.25 0.0 36.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058806 Col13a1 ENSMUST00000145469 ENSMUSP00000117248 TRANSLATION protein_coding start - 5 244.0 0.0 6.13 0.0 115.9 0.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000058806 Col13a1 ENSMUST00000051826 - NO_TRANSLATION retained_intron ENSMUSG00000058806 Col13a1 ENSMUST00000105451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000112743 Gm49358 ENSMUST00000218802 ENSMUSP00000151537 TRANSLATION protein_coding,RT start/stop - 1 418.0 3.0 9.85 0.0 448.2 0.0 -4,-6 0.7683 - -2.0 PRINCIPAL:1 ENSMUSG00000025354 Dnajc14 ENSMUST00000218511 ENSMUSP00000151567 TRANSLATION protein_coding stop - 2 184.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000025354 Dnajc14 ENSMUST00000219473 - NO_TRANSLATION retained_intron ENSMUSG00000025354 Dnajc14 ENSMUST00000218765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025354 Dnajc14 ENSMUST00000219508 ENSMUSP00000151343 TRANSLATION protein_coding - CCDS24294.1 1 703.0 3.0 4.0 11.0 195.3 1.0 -4,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000025354 Dnajc14 ENSMUST00000026410 ENSMUSP00000026410 TRANSLATION protein_coding - CCDS24294.1 1 703.0 3.0 4.0 11.0 195.3 1.0 -4,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000025354 Dnajc14 ENSMUST00000218001 ENSMUSP00000151348 TRANSLATION protein_coding stop - 2 136.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000025354 Dnajc14 ENSMUST00000217745 ENSMUSP00000151530 TRANSLATION protein_coding - CCDS24294.1 1 703.0 3.0 4.0 11.0 195.3 1.0 -4,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000000903 Vpreb3 ENSMUST00000121151 ENSMUSP00000113205 TRANSLATION protein_coding - - 3 130.0 0.0 1.0 0.0 57.5 0.0 -4,-7 0.0227 - 10.998 MINOR ENSMUSG00000000903 Vpreb3 ENSMUST00000000926 ENSMUSP00000000926 TRANSLATION protein_coding - CCDS23940.1 1 123.0 0.0 1.2 3.4 57.5 0.0 2,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000055531 Cpsf6 ENSMUST00000176670 ENSMUSP00000135150 TRANSLATION protein_coding - - 5 588.0 3.0 2.0 10.0 28.2 0.0 -4,-5 0.7634 14 13.454 ALTERNATIVE:1 ENSMUSG00000055531 Cpsf6 ENSMUST00000176480 ENSMUSP00000135550 TRANSLATION nonsense_mediated_decay start - 3 182.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 6 -2.0 MINOR ENSMUSG00000055531 Cpsf6 ENSMUST00000176686 ENSMUSP00000134823 TRANSLATION protein_coding - CCDS78898.1 1 552.0 3.0 2.0 12.0 28.2 0.0 -4,-5 0.9967 14 14.0 ALTERNATIVE:1 ENSMUSG00000055531 Cpsf6 ENSMUST00000175888 ENSMUSP00000135840 TRANSLATION protein_coding start - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000055531 Cpsf6 ENSMUST00000175924 ENSMUSP00000135848 TRANSLATION protein_coding stop - 5 91.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000055531 Cpsf6 ENSMUST00000177145 ENSMUSP00000135136 TRANSLATION protein_coding - CCDS24193.1 1 551.0 3.0 2.0 12.0 28.2 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:4 ENSMUSG00000055531 Cpsf6 ENSMUST00000176567 - NO_TRANSLATION retained_intron ENSMUSG00000055531 Cpsf6 ENSMUST00000069168 ENSMUSP00000068408 TRANSLATION protein_coding - CCDS24193.1 1 551.0 3.0 2.0 12.0 28.2 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:4 ENSMUSG00000033208 S100b ENSMUST00000036387 ENSMUSP00000047968 TRANSLATION protein_coding - CCDS35943.1 1 92.0 16.0 2.0 29.7 102.1 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000078429 Ctdsp2 ENSMUST00000217738 - NO_TRANSLATION retained_intron ENSMUSG00000078429 Ctdsp2 ENSMUST00000105256 ENSMUSP00000100891 TRANSLATION protein_coding - CCDS48711.1 1 270.0 10.0 4.599 17.5 179.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000078429 Ctdsp2 ENSMUST00000219917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078429 Ctdsp2 ENSMUST00000105255 ENSMUSP00000100890 TRANSLATION protein_coding - CCDS36076.1 1 119.0 6.0 2.5 2.3 120.8 0.0 -4,-7 0.0181 - 7.96 MINOR ENSMUSG00000047139 Cd24a ENSMUST00000214532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047139 Cd24a ENSMUST00000214476 ENSMUSP00000148921 TRANSLATION protein_coding - - 3 98.0 0.0 0.0 0.0 79.3 0.0 -4,-5 0.0371 - 2.0 ALTERNATIVE:2 ENSMUSG00000047139 Cd24a ENSMUST00000058714 ENSMUSP00000057983 TRANSLATION protein_coding - CCDS23821.1 1 76.0 0.0 0.0 1.1 79.3 0.0 4,-1 1.0 - 3.0 PRINCIPAL:2 ENSMUSG00000095608 Or10u3 ENSMUST00000170920 ENSMUSP00000128078 TRANSLATION protein_coding - - - 320.0 0.0 1.0 5.8 186.1 8.0 -4,-5 0.8838 - 9.454 ALTERNATIVE:1 ENSMUSG00000095608 Or10u3 ENSMUST00000215871 ENSMUSP00000149253 TRANSLATION protein_coding - - 5 314.0 0.0 1.0 7.6 186.1 8.0 -2,-5 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000069601 Ank3 ENSMUST00000182194 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000092432 ENSMUSP00000090088 TRANSLATION protein_coding - CCDS48590.1 5 1943.0 0.0 33.33 0.0 684.4 0.0 -4,-5 0.7489 49 4.94 ALTERNATIVE:2 ENSMUSG00000069601 Ank3 ENSMUST00000054167 ENSMUSP00000061698 TRANSLATION protein_coding - CCDS35931.1 5 1922.0 0.0 33.33 0.0 684.4 0.0 -4,-5 0.69 49 4.94 ALTERNATIVE:2 ENSMUSG00000069601 Ank3 ENSMUST00000183148 ENSMUSP00000138770 TRANSLATION protein_coding - - 5 1985.0 0.0 33.83 0.1 684.4 0.0 -4,-5 0.9889 48 5.942 ALTERNATIVE:2 ENSMUSG00000069601 Ank3 ENSMUST00000182665 ENSMUSP00000140773 TRANSLATION nonsense_mediated_decay start - 1 851.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.014 17 -2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000183074 ENSMUSP00000138671 TRANSLATION protein_coding - - 5 1157.0 0.0 12.85 0.0 176.1 0.0 -4,-5 0.012 28 0.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182692 ENSMUSP00000138623 TRANSLATION protein_coding - - 5 1001.0 0.0 12.35 4.5 176.1 0.0 -4,-5 0.8089 27 2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000047061 ENSMUSP00000045834 TRANSLATION protein_coding - CCDS23911.1 5 838.0 0.0 12.5 0.0 176.1 0.0 -4,-5 0.0627 26 0.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182439 ENSMUSP00000138356 TRANSLATION protein_coding - CCDS23911.1 1 838.0 0.0 12.5 0.0 176.1 0.0 -4,-5 0.0627 26 0.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182162 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000183023 ENSMUSP00000138450 TRANSLATION protein_coding start - 1 556.0 0.0 3.25 0.0 77.4 0.0 -4,-5 0.0 16 -2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182474 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000092431 ENSMUSP00000090087 TRANSLATION protein_coding - CCDS23910.1 5 1940.0 0.0 33.33 0.0 684.4 0.0 -4,-5 0.7539 49 4.94 ALTERNATIVE:2 ENSMUSG00000069601 Ank3 ENSMUST00000185582 ENSMUSP00000140724 TRANSLATION protein_coding start/stop - 5 178.0 0.0 1.5 0.0 35.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000092433 ENSMUSP00000090089 TRANSLATION protein_coding - CCDS23912.1 1 1094.0 0.0 12.35 1.5 176.1 0.0 -4,-5 0.2869 29 0.286 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182269 ENSMUSP00000138123 TRANSLATION protein_coding - - 5 978.0 0.0 12.85 0.0 176.1 0.0 -4,-5 0.0047 28 0.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182239 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000182367 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000182972 ENSMUSP00000138481 TRANSLATION protein_coding start - 1 1181.0 0.0 15.18 0.0 206.8 0.0 -4,-6 0.0137 29 -2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000183082 ENSMUSP00000138092 TRANSLATION protein_coding start/stop - 2 114.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182606 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000182884 ENSMUSP00000138326 TRANSLATION protein_coding - CCDS23909.1 1 1961.0 0.0 33.33 0.0 684.4 0.0 -4,-5 0.7773 49 4.94 PRINCIPAL:4 ENSMUSG00000069601 Ank3 ENSMUST00000092434 ENSMUSP00000090090 TRANSLATION protein_coding - CCDS23909.1 5 1961.0 0.0 33.33 0.0 684.4 0.0 -4,-5 0.7773 49 4.94 PRINCIPAL:4 ENSMUSG00000069601 Ank3 ENSMUST00000181974 ENSMUSP00000138285 TRANSLATION protein_coding - CCDS59546.1 1 898.0 0.0 12.35 0.4 176.1 0.0 -4,-5 0.0895 27 0.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069601 Ank3 ENSMUST00000217780 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000182993 ENSMUSP00000138601 TRANSLATION protein_coding - - 1 291.0 0.0 7.133 0.0 162.1 0.0 -4,-5 0.0 6 0.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182492 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000182687 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000218680 ENSMUSP00000151906 TRANSLATION protein_coding - - 5 1758.0 0.0 33.63 0.1 685.2 0.0 -4,-5 0.5283 47 5.34 ALTERNATIVE:2 ENSMUSG00000069601 Ank3 ENSMUST00000182155 ENSMUSP00000138347 TRANSLATION protein_coding - CCDS59545.1 1 1726.0 0.0 33.33 0.0 685.2 0.0 -4,-5 0.7056 47 4.74 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182029 ENSMUSP00000138337 TRANSLATION protein_coding - - 1 1093.0 0.0 12.35 1.2 176.1 0.0 -4,-5 0.1499 29 0.114 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000183240 ENSMUSP00000138474 TRANSLATION protein_coding stop - 3 250.0 0.0 6.665 0.0 140.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182557 ENSMUSP00000138603 TRANSLATION protein_coding - - 1 297.0 0.0 6.15 0.0 139.3 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000183001 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000182373 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000182142 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000183261 ENSMUSP00000138095 TRANSLATION protein_coding - - 5 1174.0 0.0 12.85 0.0 176.1 0.0 -4,-5 0.012 30 0.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182992 ENSMUSP00000138686 TRANSLATION protein_coding stop - 5 2622.0 0.0 34.26 0.1 661.0 0.0 -4,-5 0.4833 74 -2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182795 ENSMUSP00000138413 TRANSLATION protein_coding - - 5 881.0 0.0 12.85 0.0 176.1 0.0 -4,-5 0.0033 26 0.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182762 - NO_TRANSLATION retained_intron ENSMUSG00000069601 Ank3 ENSMUST00000218194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069601 Ank3 ENSMUST00000182207 ENSMUSP00000138531 TRANSLATION protein_coding start - 5 459.0 0.0 3.5 0.0 77.4 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000186247 ENSMUSP00000139496 TRANSLATION protein_coding start/stop - 5 2871.0 0.0 6.75 0.0 77.4 0.0 -4,-7 0.1003 67 -2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182683 ENSMUSP00000138375 TRANSLATION protein_coding start/stop - 5 335.0 0.0 4.68 0.0 98.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000182437 ENSMUSP00000138586 TRANSLATION protein_coding - - 5 961.0 0.0 12.85 0.0 176.1 0.0 -4,-5 0.0047 26 0.0 MINOR ENSMUSG00000069601 Ank3 ENSMUST00000183169 ENSMUSP00000138348 TRANSLATION protein_coding - - 5 1807.0 0.0 33.83 0.1 685.2 0.0 -4,-5 0.5764 48 5.742 ALTERNATIVE:2 ENSMUSG00000009681 Bcr ENSMUST00000218591 ENSMUSP00000151282 TRANSLATION protein_coding start - 5 120.0 0.0 0.0 0.0 31.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000009681 Bcr ENSMUST00000164107 ENSMUSP00000126377 TRANSLATION protein_coding - CCDS35935.1 1 1270.0 0.0 10.845 2.4 447.3 0.0 -4,-5 1.0 28 13.0 PRINCIPAL:1 ENSMUSG00000009681 Bcr ENSMUST00000218057 ENSMUSP00000151277 TRANSLATION protein_coding stop - 5 182.0 0.0 2.015 0.0 105.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000009681 Bcr ENSMUST00000219807 - NO_TRANSLATION retained_intron ENSMUSG00000009681 Bcr ENSMUST00000218465 ENSMUSP00000158833 TRANSLATION protein_coding - - 1 311.0 0.0 2.945 0.0 167.1 0.0 -4,-1 0.0019 3 0.0 MINOR ENSMUSG00000040249 Lrp1 ENSMUST00000049149 ENSMUSP00000044004 TRANSLATION protein_coding - CCDS24245.1 1 4545.0 155.0 52.046 0.1 1893.3 0.0 3,-2 1.0 114 18.0 PRINCIPAL:1 ENSMUSG00000040249 Lrp1 ENSMUST00000133620 ENSMUSP00000115305 TRANSLATION protein_coding start/stop - 5 98.0 14.0 2.1 0.0 103.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040249 Lrp1 ENSMUST00000135188 - NO_TRANSLATION retained_intron ENSMUSG00000040249 Lrp1 ENSMUST00000140269 - NO_TRANSLATION retained_intron ENSMUSG00000040249 Lrp1 ENSMUST00000145947 - NO_TRANSLATION retained_intron ENSMUSG00000040249 Lrp1 ENSMUST00000129727 ENSMUSP00000120567 TRANSLATION nonsense_mediated_decay start - 3 13.0 7.0 0.0 0.0 0.0 0.0 -4,-5 0.0434 - -2.0 MINOR ENSMUSG00000040249 Lrp1 ENSMUST00000118455 ENSMUSP00000113497 TRANSLATION protein_coding - - 5 285.0 21.0 3.6 0.0 128.5 0.0 3,-2 0.0 3 0.0 MINOR ENSMUSG00000040249 Lrp1 ENSMUST00000129877 - NO_TRANSLATION retained_intron ENSMUSG00000040249 Lrp1 ENSMUST00000121829 ENSMUSP00000113584 TRANSLATION protein_coding - - 1 743.0 21.0 7.14 0.0 180.9 0.0 3,-2 0.0044 13 0.0 MINOR ENSMUSG00000040249 Lrp1 ENSMUST00000125480 - NO_TRANSLATION retained_intron ENSMUSG00000015889 Lta4h ENSMUST00000217556 - NO_TRANSLATION retained_intron ENSMUSG00000015889 Lta4h ENSMUST00000215419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015889 Lta4h ENSMUST00000216146 - NO_TRANSLATION retained_intron ENSMUSG00000015889 Lta4h ENSMUST00000016033 ENSMUSP00000016033 TRANSLATION protein_coding - CCDS24125.1 1 611.0 17.0 16.08 14.5 291.9 0.0 -4,-7 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000015889 Lta4h ENSMUST00000216174 - NO_TRANSLATION retained_intron ENSMUSG00000015889 Lta4h ENSMUST00000215224 - NO_TRANSLATION retained_intron ENSMUSG00000015889 Lta4h ENSMUST00000214527 - NO_TRANSLATION retained_intron ENSMUSG00000015889 Lta4h ENSMUST00000216931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019846 Lama4 ENSMUST00000163036 - NO_TRANSLATION retained_intron ENSMUSG00000019846 Lama4 ENSMUST00000159506 - NO_TRANSLATION retained_intron ENSMUSG00000019846 Lama4 ENSMUST00000161992 - NO_TRANSLATION retained_intron ENSMUSG00000019846 Lama4 ENSMUST00000019992 ENSMUSP00000019992 TRANSLATION protein_coding - CCDS35882.1 1 1816.0 0.0 10.88 4.2 795.2 0.0 3,-2 1.0 48 14.0 PRINCIPAL:1 ENSMUSG00000019846 Lama4 ENSMUST00000162211 - NO_TRANSLATION retained_intron ENSMUSG00000019846 Lama4 ENSMUST00000161303 - NO_TRANSLATION retained_intron ENSMUSG00000019846 Lama4 ENSMUST00000159580 - NO_TRANSLATION retained_intron ENSMUSG00000046922 Gpr6 ENSMUST00000061796 ENSMUSP00000057323 TRANSLATION protein_coding - CCDS23802.1 1 363.0 0.0 0.8 11.8 108.6 0.0 -2,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048240 Gng7 ENSMUST00000118233 ENSMUSP00000114003 TRANSLATION protein_coding - - 1 68.0 0.0 2.0 34.0 64.4 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000048240 Gng7 ENSMUST00000118465 ENSMUSP00000113798 TRANSLATION protein_coding - - 1 68.0 0.0 2.0 34.0 64.4 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000048240 Gng7 ENSMUST00000126317 ENSMUSP00000122735 TRANSLATION protein_coding stop - 5 38.0 0.0 1.08 0.0 29.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000048240 Gng7 ENSMUST00000117805 ENSMUSP00000112409 TRANSLATION protein_coding - - 1 68.0 0.0 2.0 34.0 64.4 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000000290 Itgb2 ENSMUST00000153541 ENSMUSP00000137734 TRANSLATION nonsense_mediated_decay - - 1 480.0 12.0 11.25 0.0 441.4 0.0 4,-1 0.0025 21 -2.0 MINOR ENSMUSG00000000290 Itgb2 ENSMUST00000156644 ENSMUSP00000137865 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.75 0.0 33.8 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000000290 Itgb2 ENSMUST00000131023 ENSMUSP00000119657 TRANSLATION protein_coding stop - 3 54.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000000290 Itgb2 ENSMUST00000130059 ENSMUSP00000118191 TRANSLATION protein_coding stop - 3 130.0 6.0 3.75 0.0 138.9 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000000290 Itgb2 ENSMUST00000000299 ENSMUSP00000000299 TRANSLATION protein_coding - CCDS23956.1 1 770.0 12.0 16.06 3.1 552.2 0.0 4,-1 1.0 30 19.0 PRINCIPAL:1 ENSMUSG00000019945 Cabcoco1 ENSMUST00000020103 ENSMUSP00000020103 TRANSLATION protein_coding - CCDS23905.1 1 308.0 0.0 0.0 0.1 82.7 0.0 -4,-6 1.0 3 2.0 PRINCIPAL:4 ENSMUSG00000019945 Cabcoco1 ENSMUST00000166919 ENSMUSP00000128895 TRANSLATION protein_coding - - 5 208.0 0.0 0.0 3.9 71.3 0.0 -4,-7 0.8538 3 1.666 ALTERNATIVE:2 ENSMUSG00000038822 Hace1 ENSMUST00000131568 ENSMUSP00000121196 TRANSLATION protein_coding start - 5 119.0 0.0 2.605 0.0 51.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000038822 Hace1 ENSMUST00000155368 - NO_TRANSLATION retained_intron ENSMUSG00000038822 Hace1 ENSMUST00000131406 ENSMUSP00000118554 TRANSLATION protein_coding start - 1 300.0 0.0 6.35 0.0 138.7 0.0 -4,-5 0.0009 5 -2.0 MINOR ENSMUSG00000038822 Hace1 ENSMUST00000150511 ENSMUSP00000117985 TRANSLATION protein_coding start - 2 329.0 0.0 6.22 0.0 174.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038822 Hace1 ENSMUST00000037044 ENSMUSP00000039206 TRANSLATION protein_coding - CCDS23829.1 1 909.0 0.0 12.75 17.6 400.1 0.0 -4,-2 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000038822 Hace1 ENSMUST00000136905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038822 Hace1 ENSMUST00000142956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020085 Aifm2 ENSMUST00000129809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020085 Aifm2 ENSMUST00000080099 ENSMUSP00000078998 TRANSLATION protein_coding - CCDS48576.1 1 380.0 34.0 7.066 0.0 34.3 0.0 -4,-7 0.1193 11 16.134 MINOR ENSMUSG00000020085 Aifm2 ENSMUST00000131361 - NO_TRANSLATION retained_intron ENSMUSG00000020085 Aifm2 ENSMUST00000067857 ENSMUSP00000070054 TRANSLATION protein_coding - CCDS23884.1 1 373.0 34.0 8.0 29.7 34.3 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000020085 Aifm2 ENSMUST00000140664 - NO_TRANSLATION retained_intron ENSMUSG00000020085 Aifm2 ENSMUST00000099706 ENSMUSP00000097297 TRANSLATION protein_coding - CCDS23884.1 1 373.0 34.0 8.0 29.7 34.3 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000020085 Aifm2 ENSMUST00000105455 ENSMUSP00000101095 TRANSLATION protein_coding - CCDS23884.1 1 373.0 34.0 8.0 29.7 34.3 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000100004 Taar8c ENSMUST00000170267 ENSMUSP00000133193 TRANSLATION protein_coding - CCDS23747.1 - 344.0 0.0 1.0 10.3 187.4 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037710 Cisd1 ENSMUST00000045887 ENSMUSP00000043559 TRANSLATION protein_coding - CCDS23917.1 1 108.0 11.0 1.75 28.5 78.3 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000006732 Mettl1 ENSMUST00000135655 - NO_TRANSLATION retained_intron ENSMUSG00000006732 Mettl1 ENSMUST00000152960 ENSMUSP00000118282 TRANSLATION protein_coding stop - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006732 Mettl1 ENSMUST00000139486 ENSMUSP00000118885 TRANSLATION nonsense_mediated_decay start - 5 97.0 5.0 0.73 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000006732 Mettl1 ENSMUST00000006915 ENSMUSP00000006915 TRANSLATION protein_coding - CCDS24223.1 1 268.0 18.0 4.78 0.8 204.0 0.0 -4,-7 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000006732 Mettl1 ENSMUST00000120542 ENSMUSP00000113030 TRANSLATION protein_coding - - 1 228.0 16.0 2.78 0.0 137.9 0.0 -4,-7 0.0007 5 8.7 MINOR ENSMUSG00000035311 Gnptab ENSMUST00000130301 ENSMUSP00000120643 TRANSLATION protein_coding stop - 5 166.0 0.0 1.0 0.0 45.1 2.0 0,-5 0.0025 2 -2.0 MINOR ENSMUSG00000035311 Gnptab ENSMUST00000132738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035311 Gnptab ENSMUST00000020251 ENSMUSP00000020251 TRANSLATION protein_coding - CCDS24110.1 1 1235.0 6.0 4.85 0.0 428.0 2.0 -3,-7 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000035311 Gnptab ENSMUST00000127615 ENSMUSP00000116915 TRANSLATION protein_coding stop - 2 174.0 0.0 1.5 0.0 45.1 1.0 3,-2 0.0 2 -2.0 MINOR ENSMUSG00000035311 Gnptab ENSMUST00000155306 - NO_TRANSLATION retained_intron ENSMUSG00000035311 Gnptab ENSMUST00000141343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035311 Gnptab ENSMUST00000151273 ENSMUSP00000118025 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.0 0.0 0.0 1.0 -3,-7 0.0 - -2.0 MINOR ENSMUSG00000069565 Dazap1 ENSMUST00000156935 ENSMUSP00000117497 TRANSLATION protein_coding stop - 3 171.0 0.0 4.5 0.0 123.9 0.0 -4,-5 0.0078 4 -2.0 MINOR ENSMUSG00000069565 Dazap1 ENSMUST00000150328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069565 Dazap1 ENSMUST00000105361 ENSMUSP00000101000 TRANSLATION protein_coding - CCDS48627.1 1 406.0 0.0 5.33 18.5 125.2 0.0 -4,-5 0.998 6 12.0 ALTERNATIVE:1 ENSMUSG00000069565 Dazap1 ENSMUST00000151619 - NO_TRANSLATION retained_intron ENSMUSG00000069565 Dazap1 ENSMUST00000105362 ENSMUSP00000101001 TRANSLATION protein_coding - CCDS35977.1 1 405.0 0.0 5.33 18.5 125.2 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000069565 Dazap1 ENSMUST00000138032 - NO_TRANSLATION retained_intron ENSMUSG00000069565 Dazap1 ENSMUST00000092305 ENSMUSP00000089958 TRANSLATION protein_coding - CCDS48626.1 1 406.0 0.0 5.33 18.5 125.2 0.0 -4,-5 0.998 6 12.0 ALTERNATIVE:1 ENSMUSG00000037846 Rtkn2 ENSMUST00000068994 ENSMUSP00000070717 TRANSLATION nonsense_mediated_decay - - 1 604.0 0.0 0.0 0.4 195.5 0.0 -4,-5 0.7591 - -2.0 MINOR ENSMUSG00000037846 Rtkn2 ENSMUST00000118160 ENSMUSP00000112946 TRANSLATION protein_coding - - 1 604.0 0.0 0.0 0.4 195.5 0.0 -4,-5 0.7591 2 2.0 PRINCIPAL:2 ENSMUSG00000037846 Rtkn2 ENSMUST00000123147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037846 Rtkn2 ENSMUST00000147556 ENSMUSP00000116166 TRANSLATION nonsense_mediated_decay - - 1 601.0 0.0 0.0 0.4 195.5 0.0 -4,-5 0.3186 2 -2.0 MINOR ENSMUSG00000037846 Rtkn2 ENSMUST00000117086 ENSMUSP00000112419 TRANSLATION protein_coding - - 1 601.0 0.0 0.0 0.4 195.5 0.0 -4,-5 0.3186 2 2.0 ALTERNATIVE:2 ENSMUSG00000037846 Rtkn2 ENSMUST00000105437 ENSMUSP00000101077 TRANSLATION protein_coding - - 5 602.0 0.0 0.0 0.4 194.8 0.0 -4,-5 0.2226 2 2.0 ALTERNATIVE:2 ENSMUSG00000020044 Timp3 ENSMUST00000132307 ENSMUSP00000133236 TRANSLATION protein_coding stop - 3 50.0 0.0 1.415 0.0 25.8 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000020044 Timp3 ENSMUST00000136045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020044 Timp3 ENSMUST00000020234 ENSMUSP00000020234 TRANSLATION protein_coding - CCDS24097.1 1 211.0 0.0 4.8 18.7 221.4 0.0 3,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000020044 Timp3 ENSMUST00000151134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000116429 Ddit3 ENSMUST00000230446 ENSMUSP00000155363 TRANSLATION protein_coding - - - 34.0 3.0 0.8 0.0 0.0 0.0 -4,-2 0.6862 - 9.0 PRINCIPAL:1 ENSMUSG00000054027 Nt5dc3 ENSMUST00000218792 - NO_TRANSLATION retained_intron ENSMUSG00000054027 Nt5dc3 ENSMUST00000099396 ENSMUSP00000096994 TRANSLATION protein_coding - CCDS36020.1 1 546.0 0.0 10.35 1.3 519.9 0.0 -3,1 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000094146 Gm10142 ENSMUST00000179767 ENSMUSP00000135962 TRANSLATION protein_coding - CCDS56724.1 - 120.0 0.0 0.0 1.9 40.7 0.0 -4,-6 0.9906 - 7.0 PRINCIPAL:1 ENSMUSG00000006342 Susd2 ENSMUST00000219733 - NO_TRANSLATION retained_intron ENSMUSG00000006342 Susd2 ENSMUST00000077610 ENSMUSP00000076802 TRANSLATION protein_coding - CCDS48600.1 1 700.0 0.0 10.9 0.0 273.1 1.0 3,-2 0.1088 12 6.522 MINOR ENSMUSG00000006342 Susd2 ENSMUST00000095541 ENSMUSP00000093197 TRANSLATION protein_coding - CCDS23929.1 1 820.0 0.0 12.9 1.1 297.7 1.0 2,-2 1.0 15 13.0 PRINCIPAL:1 ENSMUSG00000006342 Susd2 ENSMUST00000218896 - NO_TRANSLATION retained_intron ENSMUSG00000019891 Dcbld1 ENSMUST00000218278 - NO_TRANSLATION retained_intron ENSMUSG00000019891 Dcbld1 ENSMUST00000069004 ENSMUSP00000068203 TRANSLATION protein_coding - CCDS23839.1 1 503.0 0.0 3.325 0.4 115.1 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000019891 Dcbld1 ENSMUST00000218582 ENSMUSP00000151265 TRANSLATION protein_coding - CCDS83696.1 1 432.0 0.0 2.725 0.0 50.6 0.0 3,-1 0.0329 2 6.93 MINOR ENSMUSG00000020069 Hnrnph3 ENSMUST00000118898 ENSMUSP00000112424 TRANSLATION protein_coding - CCDS83704.1 5 331.0 0.0 5.1 11.5 75.6 0.0 -4,-5 0.9664 7 10.916 ALTERNATIVE:1 ENSMUSG00000020069 Hnrnph3 ENSMUST00000020263 ENSMUSP00000020263 TRANSLATION protein_coding - CCDS48583.1 5 346.0 0.0 5.1 11.8 75.6 0.0 -4,-5 1.0 8 11.0 PRINCIPAL:3 ENSMUSG00000020069 Hnrnph3 ENSMUST00000140743 ENSMUSP00000118444 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020069 Hnrnph3 ENSMUST00000141616 - NO_TRANSLATION retained_intron ENSMUSG00000020069 Hnrnph3 ENSMUST00000119814 ENSMUSP00000113134 TRANSLATION protein_coding - - 1 71.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000020069 Hnrnph3 ENSMUST00000143689 - NO_TRANSLATION retained_intron ENSMUSG00000092048 Vmn2r85 ENSMUST00000171811 ENSMUSP00000128792 TRANSLATION protein_coding - CCDS48736.1 5 850.0 4.0 2.45 0.0 376.4 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000019564 Arid3a ENSMUST00000135005 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019564 Arid3a ENSMUST00000019708 ENSMUSP00000019708 TRANSLATION protein_coding - CCDS23999.1 1 601.0 0.0 2.35 0.4 72.3 0.0 -4,-7 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000019564 Arid3a ENSMUST00000131118 ENSMUSP00000114261 TRANSLATION protein_coding stop - 3 108.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000019564 Arid3a ENSMUST00000105376 ENSMUSP00000101015 TRANSLATION protein_coding - CCDS23999.1 1 601.0 0.0 2.35 0.4 72.3 0.0 -4,-7 1.0 8 8.0 PRINCIPAL:2 ENSMUSG00000019564 Arid3a ENSMUST00000105377 ENSMUSP00000101016 TRANSLATION protein_coding - CCDS78851.1 1 599.0 0.0 2.35 0.3 72.3 0.0 -4,-7 0.5976 7 8.0 ALTERNATIVE:2 ENSMUSG00000117965 Gm56118 ENSMUST00000235907 ENSMUSP00000157628 TRANSLATION protein_coding - - - 67.0 0.0 1.0 0.0 0.0 0.0 -1,-5 0.7008 - 6.0 PRINCIPAL:1 ENSMUSG00000047638 Nr1h4 ENSMUST00000105297 ENSMUSP00000100934 TRANSLATION protein_coding - CCDS48669.1 1 474.0 8.0 6.3 1.4 187.0 0.0 -4,-5 0.381 1 14.105 MINOR ENSMUSG00000047638 Nr1h4 ENSMUST00000058126 ENSMUSP00000053092 TRANSLATION protein_coding - CCDS24116.1 1 484.0 8.0 6.3 12.4 187.0 0.0 -4,-6 1.0 1 17.0 PRINCIPAL:4 ENSMUSG00000047638 Nr1h4 ENSMUST00000105296 ENSMUSP00000100933 TRANSLATION protein_coding - CCDS48668.1 1 488.0 8.0 6.3 12.4 187.0 0.0 -4,-6 0.9826 1 17.0 ALTERNATIVE:1 ENSMUSG00000020121 Srgap1 ENSMUST00000020322 ENSMUSP00000020322 TRANSLATION protein_coding - CCDS56751.1 1 1062.0 0.0 10.295 21.2 256.5 0.0 -4,-5 1.0 16 11.37 PRINCIPAL:3 ENSMUSG00000020121 Srgap1 ENSMUST00000161156 ENSMUSP00000125109 TRANSLATION protein_coding start - 3 68.0 0.0 1.4 0.0 55.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000020121 Srgap1 ENSMUST00000081688 ENSMUSP00000080389 TRANSLATION protein_coding - CCDS36075.1 5 1085.0 0.0 10.61 17.2 256.5 0.0 -4,-5 0.9843 14 11.208 ALTERNATIVE:1 ENSMUSG00000020121 Srgap1 ENSMUST00000162710 - NO_TRANSLATION retained_intron ENSMUSG00000020121 Srgap1 ENSMUST00000161996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038587 Akap12 ENSMUST00000239220 ENSMUSP00000159223 TRANSLATION protein_coding stop - - 190.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 3 -2.0 MINOR ENSMUSG00000038587 Akap12 ENSMUST00000045730 ENSMUSP00000035829 TRANSLATION protein_coding - CCDS56673.1 1 1684.0 0.0 0.0 0.0 141.5 0.0 -4,-5 0.6397 39 2.0 ALTERNATIVE:2 ENSMUSG00000038587 Akap12 ENSMUST00000216139 ENSMUSP00000159240 TRANSLATION protein_coding - - 1 1604.0 0.0 0.0 0.0 141.5 0.0 -4,-5 0.9178 39 2.0 PRINCIPAL:5 ENSMUSG00000038587 Akap12 ENSMUST00000215696 ENSMUSP00000150261 TRANSLATION protein_coding - - 1 1579.0 0.0 0.0 0.0 141.5 0.0 -4,-5 0.4504 38 2.0 ALTERNATIVE:2 ENSMUSG00000038587 Akap12 ENSMUST00000239373 ENSMUSP00000159267 TRANSLATION protein_coding - - - 1604.0 0.0 0.0 0.0 141.5 0.0 -4,-5 0.9178 39 2.0 ALTERNATIVE:2 ENSMUSG00000092162 Vmn2r86 ENSMUST00000170257 ENSMUSP00000126596 TRANSLATION protein_coding - CCDS48737.1 5 848.0 3.0 2.4 0.4 381.2 0.0 2,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019944 Rhobtb1 ENSMUST00000165765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019944 Rhobtb1 ENSMUST00000168117 ENSMUSP00000131509 TRANSLATION nonsense_mediated_decay - - 5 101.0 12.0 1.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019944 Rhobtb1 ENSMUST00000164876 - NO_TRANSLATION retained_intron ENSMUSG00000019944 Rhobtb1 ENSMUST00000164212 ENSMUSP00000128356 TRANSLATION protein_coding stop - 5 97.0 12.0 1.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019944 Rhobtb1 ENSMUST00000167384 ENSMUSP00000131222 TRANSLATION protein_coding - - 5 633.0 18.0 5.848 0.0 52.1 0.0 -4,-5 0.0055 - 9.378 MINOR ENSMUSG00000019944 Rhobtb1 ENSMUST00000020101 ENSMUSP00000020101 TRANSLATION protein_coding - CCDS35930.1 1 695.0 21.0 6.648 11.0 135.8 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000019944 Rhobtb1 ENSMUST00000163497 ENSMUSP00000129119 TRANSLATION protein_coding stop - 5 100.0 12.0 1.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019944 Rhobtb1 ENSMUST00000067908 ENSMUSP00000065095 TRANSLATION protein_coding - CCDS35930.1 1 695.0 21.0 6.648 11.0 135.8 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000019944 Rhobtb1 ENSMUST00000172261 ENSMUSP00000128667 TRANSLATION protein_coding stop - 3 98.0 12.0 1.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019944 Rhobtb1 ENSMUST00000167286 ENSMUSP00000131313 TRANSLATION protein_coding stop - 3 93.0 12.0 0.948 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019944 Rhobtb1 ENSMUST00000169569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019944 Rhobtb1 ENSMUST00000164034 ENSMUSP00000132068 TRANSLATION protein_coding - CCDS35930.1 1 695.0 21.0 6.648 11.0 135.8 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000019944 Rhobtb1 ENSMUST00000163760 ENSMUSP00000127904 TRANSLATION protein_coding start - 5 96.0 0.0 1.55 0.0 23.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020232 Hmg20b ENSMUST00000134857 - NO_TRANSLATION retained_intron ENSMUSG00000020232 Hmg20b ENSMUST00000154609 ENSMUSP00000115459 TRANSLATION protein_coding stop - 3 235.0 0.0 2.5 0.0 68.0 0.0 -4,-7 0.0122 3 -2.0 MINOR ENSMUSG00000020232 Hmg20b ENSMUST00000129482 - NO_TRANSLATION retained_intron ENSMUSG00000020232 Hmg20b ENSMUST00000132313 - NO_TRANSLATION retained_intron ENSMUSG00000020232 Hmg20b ENSMUST00000141171 ENSMUSP00000117322 TRANSLATION protein_coding start/stop - 2 246.0 0.0 2.5 0.0 68.0 0.0 -4,-6 0.0113 5 -2.0 MINOR ENSMUSG00000020232 Hmg20b ENSMUST00000105324 ENSMUSP00000100961 TRANSLATION protein_coding - CCDS24055.1 1 317.0 0.0 2.5 13.2 68.0 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000020232 Hmg20b ENSMUST00000140160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020232 Hmg20b ENSMUST00000122993 ENSMUSP00000137861 TRANSLATION protein_coding - - 1 215.0 0.0 1.5 0.0 26.4 0.0 -4,-5 0.0 5 5.928 MINOR ENSMUSG00000020232 Hmg20b ENSMUST00000140268 - NO_TRANSLATION retained_intron ENSMUSG00000020232 Hmg20b ENSMUST00000148839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020232 Hmg20b ENSMUST00000020454 ENSMUSP00000020454 TRANSLATION protein_coding - CCDS24055.1 1 317.0 0.0 2.5 13.2 68.0 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000020232 Hmg20b ENSMUST00000105323 ENSMUSP00000100960 TRANSLATION protein_coding - CCDS24055.1 1 317.0 0.0 2.5 13.2 68.0 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000061032 Rrp1 ENSMUST00000062678 ENSMUSP00000058785 TRANSLATION protein_coding - CCDS35961.1 1 494.0 0.0 3.43 0.0 234.8 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000061032 Rrp1 ENSMUST00000219901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061032 Rrp1 ENSMUST00000217824 - NO_TRANSLATION retained_intron ENSMUSG00000061032 Rrp1 ENSMUST00000219374 ENSMUSP00000151634 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 0.48 0.0 24.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000061032 Rrp1 ENSMUST00000218962 - NO_TRANSLATION retained_intron ENSMUSG00000061032 Rrp1 ENSMUST00000219141 - NO_TRANSLATION retained_intron ENSMUSG00000061032 Rrp1 ENSMUST00000219406 - NO_TRANSLATION retained_intron ENSMUSG00000061032 Rrp1 ENSMUST00000217835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058251 Or6c69c ENSMUST00000216879 ENSMUSP00000150652 TRANSLATION protein_coding - CCDS24347.1 5 312.0 0.0 1.0 12.5 167.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058251 Or6c69c ENSMUST00000080460 ENSMUSP00000079316 TRANSLATION protein_coding - CCDS24347.1 - 312.0 0.0 1.0 12.5 167.7 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004933 Matk ENSMUST00000151660 - NO_TRANSLATION retained_intron ENSMUSG00000004933 Matk ENSMUST00000105328 ENSMUSP00000100965 TRANSLATION protein_coding - CCDS70078.1 1 465.0 18.0 9.814 7.9 397.5 0.0 -4,-6 0.9891 4 16.0 ALTERNATIVE:1 ENSMUSG00000004933 Matk ENSMUST00000128576 ENSMUSP00000122445 TRANSLATION nonsense_mediated_decay - - 1 162.0 0.0 3.81534 0.0 101.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000004933 Matk ENSMUST00000117488 ENSMUSP00000113221 TRANSLATION protein_coding - CCDS24048.1 1 505.0 18.0 9.814 3.9 397.5 0.0 -4,0 0.6168 4 14.84 MINOR ENSMUSG00000004933 Matk ENSMUST00000119547 ENSMUSP00000113576 TRANSLATION protein_coding - CCDS70078.1 1 465.0 18.0 9.814 7.9 397.5 0.0 -4,-6 0.9891 4 16.0 ALTERNATIVE:1 ENSMUSG00000004933 Matk ENSMUST00000150605 - NO_TRANSLATION retained_intron ENSMUSG00000004933 Matk ENSMUST00000130282 ENSMUSP00000114233 TRANSLATION protein_coding stop - 3 101.0 0.0 2.75 0.0 32.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000004933 Matk ENSMUST00000126720 - NO_TRANSLATION retained_intron ENSMUSG00000004933 Matk ENSMUST00000148735 - NO_TRANSLATION retained_intron ENSMUSG00000004933 Matk ENSMUST00000120265 ENSMUSP00000113666 TRANSLATION protein_coding - CCDS70077.1 5 466.0 18.0 9.814 7.9 397.5 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:4 ENSMUSG00000004933 Matk ENSMUST00000121205 ENSMUSP00000113043 TRANSLATION protein_coding - CCDS70077.1 1 466.0 18.0 9.814 7.9 397.5 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:4 ENSMUSG00000015519 2310057J18Rik ENSMUST00000152363 ENSMUSP00000118049 TRANSLATION protein_coding - - 1 246.0 0.0 4.08 0.0 202.4 0.0 3,-2 0.0004 2 3.372 MINOR ENSMUSG00000015519 2310057J18Rik ENSMUST00000015663 ENSMUSP00000015663 TRANSLATION protein_coding - CCDS23759.1 1 337.0 0.0 6.33 4.6 271.2 0.0 3,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000015519 2310057J18Rik ENSMUST00000140558 ENSMUSP00000121044 TRANSLATION protein_coding - - 5 229.0 0.0 5.0 0.0 171.8 0.0 -4,-6 0.0 4 3.378 MINOR ENSMUSG00000015519 2310057J18Rik ENSMUST00000141350 - NO_TRANSLATION retained_intron ENSMUSG00000034674 Tdg ENSMUST00000148790 - NO_TRANSLATION retained_intron ENSMUSG00000034674 Tdg ENSMUST00000151390 ENSMUSP00000121000 TRANSLATION protein_coding - CCDS24070.1 1 421.0 1.0 6.08 0.0 65.6 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:2 ENSMUSG00000034674 Tdg ENSMUST00000135652 - NO_TRANSLATION retained_intron ENSMUSG00000034674 Tdg ENSMUST00000176195 ENSMUSP00000135883 TRANSLATION nonsense_mediated_decay start - 5 111.0 1.0 2.75 0.0 36.5 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000034674 Tdg ENSMUST00000125970 - NO_TRANSLATION retained_intron ENSMUSG00000034674 Tdg ENSMUST00000142658 - NO_TRANSLATION retained_intron ENSMUSG00000034674 Tdg ENSMUST00000092266 ENSMUSP00000089917 TRANSLATION protein_coding - CCDS36013.1 1 397.0 1.0 6.08 0.0 65.6 0.0 -4,-5 0.2142 5 6.0 ALTERNATIVE:2 ENSMUSG00000034674 Tdg ENSMUST00000133227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034674 Tdg ENSMUST00000145370 ENSMUSP00000116707 TRANSLATION protein_coding stop - 3 186.0 1.0 2.75 0.0 32.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034674 Tdg ENSMUST00000176326 ENSMUSP00000135009 TRANSLATION protein_coding start - 3 196.0 0.0 3.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000034674 Tdg ENSMUST00000177353 ENSMUSP00000135621 TRANSLATION protein_coding start - 3 208.0 1.0 4.58 0.0 61.7 0.0 -4,-6 0.0014 4 -2.0 MINOR ENSMUSG00000036478 Btg1 ENSMUST00000218953 ENSMUSP00000151604 TRANSLATION protein_coding - - 2 96.0 0.0 1.0 0.0 56.3 0.0 -4,-5 0.0 2 2.778 MINOR ENSMUSG00000036478 Btg1 ENSMUST00000038377 ENSMUSP00000038863 TRANSLATION protein_coding - CCDS24140.1 1 171.0 0.0 2.75 25.2 146.4 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000100186 Taar8b ENSMUST00000092654 ENSMUSP00000090324 TRANSLATION protein_coding - CCDS23746.1 - 344.0 0.0 1.0 10.3 186.0 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025358 Cdk2 ENSMUST00000220407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025358 Cdk2 ENSMUST00000219047 - NO_TRANSLATION retained_intron ENSMUSG00000025358 Cdk2 ENSMUST00000026416 ENSMUSP00000026416 TRANSLATION protein_coding - CCDS24289.1 1 346.0 18.0 5.75 10.0 245.8 0.0 -4,-5 0.2803 7 16.114 MINOR ENSMUSG00000025358 Cdk2 ENSMUST00000026415 ENSMUSP00000026415 TRANSLATION protein_coding - CCDS24288.1 1 298.0 18.0 6.75 28.4 265.8 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000025358 Cdk2 ENSMUST00000219099 - NO_TRANSLATION retained_intron ENSMUSG00000025358 Cdk2 ENSMUST00000219983 - NO_TRANSLATION retained_intron ENSMUSG00000025358 Cdk2 ENSMUST00000219601 - NO_TRANSLATION retained_intron ENSMUSG00000069520 Tmem19 ENSMUST00000217884 ENSMUSP00000151753 TRANSLATION protein_coding - - 5 302.0 0.0 6.0 0.0 250.4 9.0 -3,-6 0.0981 1 12.0 MINOR ENSMUSG00000069520 Tmem19 ENSMUST00000218731 ENSMUSP00000151762 TRANSLATION protein_coding - - 1 236.0 0.0 4.5 0.0 217.3 6.0 -4,-6 0.0038 1 7.014 MINOR ENSMUSG00000069520 Tmem19 ENSMUST00000217848 ENSMUSP00000151766 TRANSLATION protein_coding stop - 3 159.0 0.0 2.75 0.0 150.6 3.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000069520 Tmem19 ENSMUST00000219890 ENSMUSP00000152044 TRANSLATION protein_coding - - 5 302.0 0.0 6.0 0.0 250.4 9.0 -3,-6 0.0981 1 12.0 MINOR ENSMUSG00000069520 Tmem19 ENSMUST00000219821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069520 Tmem19 ENSMUST00000219597 - NO_TRANSLATION retained_intron ENSMUSG00000069520 Tmem19 ENSMUST00000092170 ENSMUSP00000089808 TRANSLATION protein_coding - CCDS24178.1 1 336.0 0.0 6.0 17.8 250.4 12.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000069520 Tmem19 ENSMUST00000218009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069520 Tmem19 ENSMUST00000217887 ENSMUSP00000151334 TRANSLATION protein_coding - - 1 351.0 0.0 6.0 0.0 250.4 12.0 -4,-5 0.0707 1 12.0 MINOR ENSMUSG00000069520 Tmem19 ENSMUST00000220336 ENSMUSP00000151793 TRANSLATION protein_coding stop - 5 81.0 0.0 1.0 0.0 0.0 6.0 -4,-6 0.0023 - -2.0 MINOR ENSMUSG00000004359 Spic ENSMUST00000133724 ENSMUSP00000114328 TRANSLATION nonsense_mediated_decay - - 1 113.0 0.0 0.32 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004359 Spic ENSMUST00000138734 ENSMUSP00000118799 TRANSLATION protein_coding stop - 5 167.0 0.0 1.32 0.0 43.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004359 Spic ENSMUST00000004473 ENSMUSP00000004473 TRANSLATION protein_coding - CCDS36023.1 1 242.0 0.0 2.32 0.0 77.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000004359 Spic ENSMUST00000144338 - NO_TRANSLATION retained_intron ENSMUSG00000015305 Sash1 ENSMUST00000212553 ENSMUSP00000148656 TRANSLATION protein_coding stop - 2 157.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015305 Sash1 ENSMUST00000015449 ENSMUSP00000015449 TRANSLATION protein_coding - CCDS23692.1 1 1230.0 0.0 3.8 0.1 245.4 0.0 -4,-5 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000015305 Sash1 ENSMUST00000212869 ENSMUSP00000148780 TRANSLATION protein_coding start/stop - 5 358.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0015 2 -2.0 MINOR ENSMUSG00000015305 Sash1 ENSMUST00000213032 - NO_TRANSLATION retained_intron ENSMUSG00000003226 Ranbp2 ENSMUST00000219332 - NO_TRANSLATION retained_intron ENSMUSG00000003226 Ranbp2 ENSMUST00000003310 ENSMUSP00000003310 TRANSLATION protein_coding - CCDS23861.1 5 3053.0 8.0 6.5 0.0 1267.7 0.0 -4,-7 1.0 80 18.0 PRINCIPAL:1 ENSMUSG00000003226 Ranbp2 ENSMUST00000220131 - NO_TRANSLATION retained_intron ENSMUSG00000020080 Hkdc1 ENSMUST00000159454 - NO_TRANSLATION retained_intron ENSMUSG00000020080 Hkdc1 ENSMUST00000020277 ENSMUSP00000020277 TRANSLATION protein_coding - CCDS23888.1 1 915.0 51.0 17.75 20.9 1054.7 0.0 -4,-6 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000020080 Hkdc1 ENSMUST00000159579 - NO_TRANSLATION retained_intron ENSMUSG00000020080 Hkdc1 ENSMUST00000159493 - NO_TRANSLATION retained_intron ENSMUSG00000020218 Wif1 ENSMUST00000175867 ENSMUSP00000135486 TRANSLATION protein_coding - - 5 365.0 3.0 8.1 0.1 153.9 0.0 3,-2 0.0526 3 13.098 MINOR ENSMUSG00000020218 Wif1 ENSMUST00000145691 - NO_TRANSLATION retained_intron ENSMUSG00000020218 Wif1 ENSMUST00000020439 ENSMUSP00000020439 TRANSLATION protein_coding - CCDS24209.1 1 379.0 3.0 8.6 10.9 168.9 0.0 3,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000019873 Reep3 ENSMUST00000218920 ENSMUSP00000151490 TRANSLATION protein_coding start - 3 25.0 0.0 0.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019873 Reep3 ENSMUST00000020023 ENSMUSP00000020023 TRANSLATION protein_coding - CCDS35926.1 1 254.0 0.0 3.63 15.5 93.4 3.0 -1,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000019873 Reep3 ENSMUST00000219431 - NO_TRANSLATION retained_intron ENSMUSG00000019873 Reep3 ENSMUST00000217841 ENSMUSP00000151994 TRANSLATION protein_coding - - 1 267.0 0.0 3.63 0.0 93.4 3.0 -1,-6 0.0741 4 12.0 MINOR ENSMUSG00000039531 Zup1 ENSMUST00000218222 ENSMUSP00000151230 TRANSLATION protein_coding stop - 3 136.0 8.0 0.332 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039531 Zup1 ENSMUST00000218055 ENSMUSP00000151811 TRANSLATION protein_coding - - 1 577.0 15.0 8.214 9.2 247.5 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000039531 Zup1 ENSMUST00000048222 ENSMUSP00000037121 TRANSLATION protein_coding - CCDS23772.1 1 566.0 15.0 7.714 0.0 247.5 0.0 -4,-5 0.3123 2 16.998 MINOR ENSMUSG00000039531 Zup1 ENSMUST00000218892 ENSMUSP00000151562 TRANSLATION protein_coding stop - 2 94.0 8.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000039531 Zup1 ENSMUST00000219935 - NO_TRANSLATION retained_intron ENSMUSG00000039531 Zup1 ENSMUST00000219457 ENSMUSP00000151455 TRANSLATION nonsense_mediated_decay - - 1 279.0 15.0 1.214 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039531 Zup1 ENSMUST00000218275 ENSMUSP00000151484 TRANSLATION nonsense_mediated_decay - - 1 279.0 15.0 1.214 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039531 Zup1 ENSMUST00000219878 ENSMUSP00000151477 TRANSLATION nonsense_mediated_decay - - 1 226.0 15.0 0.214 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039531 Zup1 ENSMUST00000218880 ENSMUSP00000151662 TRANSLATION protein_coding - - 5 551.0 15.0 6.813 0.0 237.1 0.0 -4,-5 0.0197 2 14.574 MINOR ENSMUSG00000034453 Polr3b ENSMUST00000215853 ENSMUSP00000149862 TRANSLATION nonsense_mediated_decay start - 3 179.0 0.0 4.5 0.0 96.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000034453 Polr3b ENSMUST00000213263 - NO_TRANSLATION retained_intron ENSMUSG00000034453 Polr3b ENSMUST00000077175 ENSMUSP00000076418 TRANSLATION protein_coding - CCDS24081.1 1 1133.0 9.0 25.705 30.8 1027.9 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000034453 Polr3b ENSMUST00000213543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047146 Tet1 ENSMUST00000228901 ENSMUSP00000154690 TRANSLATION protein_coding stop - - 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047146 Tet1 ENSMUST00000173905 ENSMUSP00000134571 TRANSLATION nonsense_mediated_decay start - 3 68.0 0.0 1.0 0.0 63.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047146 Tet1 ENSMUST00000227494 ENSMUSP00000154527 TRANSLATION protein_coding stop - - 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047146 Tet1 ENSMUST00000173087 ENSMUSP00000133706 TRANSLATION protein_coding start - 2 138.0 0.0 2.73 0.0 188.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047146 Tet1 ENSMUST00000218782 ENSMUSP00000151633 TRANSLATION protein_coding stop - 1 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047146 Tet1 ENSMUST00000050826 ENSMUSP00000059527 TRANSLATION protein_coding - - 5 2007.0 8.0 8.06 0.0 509.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000047146 Tet1 ENSMUST00000173081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047146 Tet1 ENSMUST00000174121 ENSMUSP00000134328 TRANSLATION protein_coding start/stop - 2 399.0 0.0 2.73 0.0 359.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047146 Tet1 ENSMUST00000174189 ENSMUSP00000133279 TRANSLATION protein_coding - CCDS56706.1 5 2039.0 8.0 7.06 0.0 496.9 0.0 -4,-5 0.3555 - 15.27 MINOR ENSMUSG00000047146 Tet1 ENSMUST00000218438 ENSMUSP00000151836 TRANSLATION protein_coding stop - 1 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095673 Gm4308 ENSMUST00000179735 ENSMUSP00000159555 TRANSLATION protein_coding - - - 286.0 0.0 0.6 0.0 48.2 0.0 -4,-5 0.7797 - 12.0 PRINCIPAL:1 ENSMUSG00000046934 Csl ENSMUST00000056085 ENSMUSP00000052373 TRANSLATION protein_coding - CCDS24149.1 - 466.0 23.0 1.0 20.0 0.0 0.0 -2,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000044937 Ttc41 ENSMUST00000061458 ENSMUSP00000062844 TRANSLATION protein_coding - CCDS24099.1 1 409.0 10.0 0.0 0.0 0.0 0.0 -4,-5 0.0558 - 2.664 MINOR ENSMUSG00000044937 Ttc41 ENSMUST00000075632 ENSMUSP00000075059 TRANSLATION protein_coding - CCDS24098.1 1 1318.0 15.0 0.0 0.1 32.1 0.0 -4,-5 0.971 - 6.0 PRINCIPAL:1 ENSMUSG00000044937 Ttc41 ENSMUST00000219476 ENSMUSP00000151796 TRANSLATION nonsense_mediated_decay start - 1 50.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0005 - -2.0 MINOR ENSMUSG00000044937 Ttc41 ENSMUST00000217747 ENSMUSP00000151242 TRANSLATION protein_coding - CCDS24099.1 1 409.0 10.0 0.0 0.0 0.0 0.0 -4,-5 0.0558 - 2.664 MINOR ENSMUSG00000044937 Ttc41 ENSMUST00000219070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044937 Ttc41 ENSMUST00000219108 ENSMUSP00000151920 TRANSLATION protein_coding - - 1 600.0 13.0 0.0 0.0 33.9 0.0 -4,-5 0.0855 - 4.668 MINOR ENSMUSG00000019826 Zbtb24 ENSMUST00000213797 ENSMUSP00000148861 TRANSLATION protein_coding - - 1 688.0 24.0 2.27375 0.0 202.3 0.0 -4,-5 0.086 1 8.106 MINOR ENSMUSG00000019826 Zbtb24 ENSMUST00000215881 - NO_TRANSLATION retained_intron ENSMUSG00000019826 Zbtb24 ENSMUST00000080771 ENSMUSP00000079592 TRANSLATION protein_coding - CCDS23804.1 1 710.0 32.0 3.65 0.1 232.4 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000019826 Zbtb24 ENSMUST00000214159 - NO_TRANSLATION retained_intron ENSMUSG00000019826 Zbtb24 ENSMUST00000216656 ENSMUSP00000150197 TRANSLATION protein_coding - - 1 354.0 4.0 0.0 0.0 115.1 0.0 -4,-5 0.0008 1 0.0 MINOR ENSMUSG00000053684 Kics2 ENSMUST00000136432 ENSMUSP00000117249 TRANSLATION protein_coding - - 1 309.0 0.0 1.0 1.1 597.5 0.0 -4,-5 0.0165 5 4.304 MINOR ENSMUSG00000053684 Kics2 ENSMUST00000138630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053684 Kics2 ENSMUST00000065600 ENSMUSP00000070834 TRANSLATION protein_coding - CCDS24213.1 1 445.0 0.0 1.4 21.4 825.0 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000096229 Or6c5 ENSMUST00000203248 ENSMUSP00000145042 TRANSLATION protein_coding - CCDS48732.1 3 312.0 0.0 1.0 12.5 165.4 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096229 Or6c5 ENSMUST00000097164 ENSMUSP00000131609 TRANSLATION protein_coding - CCDS48732.1 - 312.0 0.0 1.0 12.5 165.4 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093866 Or6c1 ENSMUST00000217576 ENSMUSP00000150123 TRANSLATION protein_coding - CCDS24329.1 5 312.0 0.0 1.0 12.5 188.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093866 Or6c1 ENSMUST00000203785 ENSMUSP00000144741 TRANSLATION protein_coding - CCDS24329.1 5 312.0 0.0 1.0 12.5 188.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093866 Or6c1 ENSMUST00000074713 ENSMUSP00000074275 TRANSLATION protein_coding - CCDS24329.1 - 312.0 0.0 1.0 12.5 188.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037370 Enpp1 ENSMUST00000135846 ENSMUSP00000114273 TRANSLATION protein_coding - CCDS78802.1 1 906.0 14.0 20.49 1.1 395.1 1.0 -4,-5 0.9815 18 15.0 ALTERNATIVE:2 ENSMUSG00000037370 Enpp1 ENSMUST00000142974 - NO_TRANSLATION retained_intron ENSMUSG00000037370 Enpp1 ENSMUST00000039882 ENSMUSP00000046090 TRANSLATION nonsense_mediated_decay - - 1 369.0 3.0 7.665 0.0 234.7 1.0 -4,-5 0.0028 6 -2.0 MINOR ENSMUSG00000037370 Enpp1 ENSMUST00000150570 - NO_TRANSLATION retained_intron ENSMUSG00000037370 Enpp1 ENSMUST00000105520 ENSMUSP00000101159 TRANSLATION protein_coding - CCDS35870.1 1 905.0 14.0 20.49 0.4 395.2 1.0 -4,-5 1.0 18 14.0 PRINCIPAL:4 ENSMUSG00000075046 Duxf3 ENSMUST00000176875 ENSMUSP00000145004 TRANSLATION protein_coding - - - 674.0 0.0 0.0 0.0 105.0 0.0 -4,-2 0.756 - 6.0 PRINCIPAL:1 ENSMUSG00000096054 Syne1 ENSMUST00000217592 - NO_TRANSLATION retained_intron ENSMUSG00000096054 Syne1 ENSMUST00000217064 - NO_TRANSLATION retained_intron ENSMUSG00000096054 Syne1 ENSMUST00000041639 ENSMUSP00000039440 TRANSLATION protein_coding - CCDS56680.1 1 1431.0 0.0 5.44 0.8 136.1 0.0 -4,-2 0.1117 27 1.602 MINOR ENSMUSG00000096054 Syne1 ENSMUST00000095899 ENSMUSP00000093587 TRANSLATION protein_coding - CCDS56679.1 1 949.0 0.0 0.6 1.5 225.2 0.0 -4,-5 0.0893 18 1.0 MINOR ENSMUSG00000096054 Syne1 ENSMUST00000214945 ENSMUSP00000149011 TRANSLATION protein_coding stop - 1 615.0 0.0 5.44 0.0 149.5 0.0 -4,-2 0.0 8 -2.0 MINOR ENSMUSG00000096054 Syne1 ENSMUST00000215021 - NO_TRANSLATION retained_intron ENSMUSG00000096054 Syne1 ENSMUST00000215295 ENSMUSP00000150262 TRANSLATION protein_coding - - 5 8799.0 0.0 7.64 0.4 608.5 0.0 -4,-2 1.0 183 12.0 PRINCIPAL:1 ENSMUSG00000096054 Syne1 ENSMUST00000215887 - NO_TRANSLATION retained_intron ENSMUSG00000096054 Syne1 ENSMUST00000215467 ENSMUSP00000149637 TRANSLATION protein_coding stop - 1 1288.0 0.0 0.0 0.0 24.6 0.0 -4,-5 0.0295 19 -2.0 MINOR ENSMUSG00000020015 Cdk17 ENSMUST00000215286 ENSMUSP00000150873 TRANSLATION nonsense_mediated_decay start - 2 481.0 18.0 9.25 0.0 241.2 0.0 -4,-5 0.0296 4 -2.0 MINOR ENSMUSG00000020015 Cdk17 ENSMUST00000069965 ENSMUSP00000070355 TRANSLATION protein_coding - CCDS48670.1 1 523.0 18.0 9.25 36.9 241.2 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000020015 Cdk17 ENSMUST00000216729 ENSMUSP00000149967 TRANSLATION nonsense_mediated_decay start - 5 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000020015 Cdk17 ENSMUST00000214445 ENSMUSP00000150690 TRANSLATION protein_coding stop - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000020015 Cdk17 ENSMUST00000215495 - NO_TRANSLATION retained_intron ENSMUSG00000020015 Cdk17 ENSMUST00000213378 ENSMUSP00000149297 TRANSLATION protein_coding stop - 3 71.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000108114 Or6c210 ENSMUST00000104903 ENSMUSP00000100499 TRANSLATION protein_coding - CCDS24327.1 - 311.0 0.0 1.0 11.5 145.4 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108114 Or6c210 ENSMUST00000217094 ENSMUSP00000151047 TRANSLATION protein_coding - CCDS24327.1 3 311.0 0.0 1.0 11.5 145.4 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045555 Mettl24 ENSMUST00000058747 ENSMUSP00000049997 TRANSLATION protein_coding - CCDS23799.1 1 363.0 0.0 0.0 6.5 22.0 0.0 0,-3 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000020059 Sycp3 ENSMUST00000123244 ENSMUSP00000137704 TRANSLATION nonsense_mediated_decay - - 1 108.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020059 Sycp3 ENSMUST00000020252 ENSMUSP00000020252 TRANSLATION protein_coding - CCDS24111.1 1 254.0 0.0 5.25 0.1 186.8 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000020059 Sycp3 ENSMUST00000125612 ENSMUSP00000137800 TRANSLATION protein_coding - - 1 248.0 0.0 4.816 0.0 186.8 0.0 -4,-5 0.0809 - 7.13 ALTERNATIVE:2 ENSMUSG00000020151 Ptprr ENSMUST00000063470 ENSMUSP00000064392 TRANSLATION protein_coding - CCDS24182.1 1 656.0 11.0 7.5 8.4 250.8 1.0 1,-4 1.0 9 17.0 PRINCIPAL:3 ENSMUSG00000020151 Ptprr ENSMUST00000128399 ENSMUSP00000114455 TRANSLATION protein_coding - CCDS48693.1 1 412.0 11.0 7.5 7.9 250.8 0.0 -4,-6 0.8225 6 16.796 ALTERNATIVE:1 ENSMUSG00000020151 Ptprr ENSMUST00000148731 ENSMUSP00000120965 TRANSLATION protein_coding - CCDS48693.1 5 412.0 11.0 7.5 7.9 250.8 0.0 -4,-6 0.8225 6 16.796 ALTERNATIVE:1 ENSMUSG00000020151 Ptprr ENSMUST00000124369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020151 Ptprr ENSMUST00000155606 ENSMUSP00000122259 TRANSLATION protein_coding - CCDS48693.1 1 412.0 11.0 7.5 7.9 250.8 0.0 -4,-6 0.8225 6 16.796 ALTERNATIVE:1 ENSMUSG00000020151 Ptprr ENSMUST00000105271 ENSMUSP00000100907 TRANSLATION protein_coding - CCDS56750.1 1 549.0 11.0 7.5 0.3 250.8 1.0 -4,-7 0.2509 9 14.0 MINOR ENSMUSG00000020151 Ptprr ENSMUST00000142617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020169 Best3 ENSMUST00000020378 ENSMUSP00000020378 TRANSLATION protein_coding - CCDS24188.1 1 669.0 0.0 7.5 0.4 367.6 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045886 Pam16l ENSMUST00000057649 ENSMUSP00000137140 TRANSLATION protein_coding - - - 125.0 0.0 1.75 19.5 201.5 0.0 -3,-1 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000045886 Pam16l ENSMUST00000216543 ENSMUSP00000148958 TRANSLATION protein_coding - - 5 97.0 0.0 1.0 0.0 153.3 0.0 -4,-2 0.0 4 6.534 MINOR ENSMUSG00000025374 Nabp2 ENSMUST00000164664 ENSMUSP00000127605 TRANSLATION protein_coding stop - 5 151.0 0.0 3.74 0.0 29.3 0.0 -4,-5 0.0077 1 -2.0 MINOR ENSMUSG00000025374 Nabp2 ENSMUST00000171370 ENSMUSP00000127436 TRANSLATION protein_coding stop - 3 56.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025374 Nabp2 ENSMUST00000166608 ENSMUSP00000131171 TRANSLATION protein_coding - - 5 228.0 0.0 3.74 2.2 29.3 0.0 -4,-5 0.1395 2 12.356 MINOR ENSMUSG00000025374 Nabp2 ENSMUST00000172238 ENSMUSP00000130608 TRANSLATION nonsense_mediated_decay - - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000025374 Nabp2 ENSMUST00000164199 ENSMUSP00000128634 TRANSLATION protein_coding - CCDS24276.1 1 212.0 0.0 3.74 14.5 29.3 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025374 Nabp2 ENSMUST00000172348 ENSMUSP00000127015 TRANSLATION protein_coding stop - 3 154.0 0.0 3.74 0.0 29.3 0.0 -4,-5 0.0081 1 -2.0 MINOR ENSMUSG00000025374 Nabp2 ENSMUST00000167456 - NO_TRANSLATION retained_intron ENSMUSG00000025374 Nabp2 ENSMUST00000171494 ENSMUSP00000126842 TRANSLATION protein_coding stop - 3 65.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025374 Nabp2 ENSMUST00000026439 ENSMUSP00000026439 TRANSLATION protein_coding - CCDS24276.1 1 212.0 0.0 3.74 14.5 29.3 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000095804 Or9r7 ENSMUST00000074161 ENSMUSP00000073794 TRANSLATION protein_coding - CCDS24349.1 - 315.0 0.0 1.0 10.5 182.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095804 Or9r7 ENSMUST00000214192 ENSMUSP00000150662 TRANSLATION protein_coding - CCDS24349.1 5 315.0 0.0 1.0 10.5 182.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095804 Or9r7 ENSMUST00000215217 ENSMUSP00000150606 TRANSLATION protein_coding - CCDS24349.1 5 315.0 0.0 1.0 10.5 182.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000001435 Col18a1 ENSMUST00000156009 ENSMUSP00000122580 TRANSLATION protein_coding stop - 3 161.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000001435 Col18a1 ENSMUST00000072755 ENSMUSP00000072538 TRANSLATION protein_coding - - 5 1774.0 0.0 7.244 0.0 943.3 0.0 3,-2 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000001435 Col18a1 ENSMUST00000218407 ENSMUSP00000151291 TRANSLATION protein_coding start/stop - 3 225.0 0.0 1.0 0.0 45.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000001435 Col18a1 ENSMUST00000081654 ENSMUSP00000080358 TRANSLATION protein_coding - CCDS23953.1 1 1315.0 0.0 7.044 0.0 541.5 0.0 4,-1 0.4002 19 5.598 MINOR ENSMUSG00000001435 Col18a1 ENSMUST00000105409 ENSMUSP00000101049 TRANSLATION protein_coding - CCDS48604.1 1 1527.0 0.0 7.044 0.0 876.8 0.0 3,-2 0.6646 21 7.608 MINOR ENSMUSG00000111732 Or6c5b ENSMUST00000204402 ENSMUSP00000145040 TRANSLATION protein_coding - CCDS83768.1 5 312.0 0.0 1.0 12.5 168.4 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000090298 Sult3a2 ENSMUST00000165904 ENSMUSP00000127159 TRANSLATION protein_coding - CCDS48533.1 5 293.0 19.0 6.0 7.9 261.3 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000090298 Sult3a2 ENSMUST00000223295 ENSMUSP00000152718 TRANSLATION protein_coding - CCDS48533.1 5 293.0 19.0 6.0 7.9 261.3 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000046841 Ckap4 ENSMUST00000053871 ENSMUSP00000050336 TRANSLATION protein_coding - CCDS24080.1 1 575.0 0.0 0.0 0.3 0.0 0.0 -4,-7 0.8844 28 0.0 PRINCIPAL:1 ENSMUSG00000020260 Pofut2 ENSMUST00000020493 ENSMUSP00000020493 TRANSLATION protein_coding - CCDS23954.1 1 429.0 0.0 7.75 7.4 236.5 0.0 2,-2 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000020260 Pofut2 ENSMUST00000219376 ENSMUSP00000151877 TRANSLATION protein_coding start/stop - 5 209.0 0.0 4.75 0.0 86.6 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000020260 Pofut2 ENSMUST00000218672 - NO_TRANSLATION retained_intron ENSMUSG00000020260 Pofut2 ENSMUST00000218064 ENSMUSP00000151864 TRANSLATION nonsense_mediated_decay start - 5 164.0 0.0 3.75 0.0 29.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020260 Pofut2 ENSMUST00000217993 - NO_TRANSLATION retained_intron ENSMUSG00000020260 Pofut2 ENSMUST00000218117 ENSMUSP00000151264 TRANSLATION protein_coding start - 2 170.0 0.0 2.0 0.0 80.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000020198 Ap3d1 ENSMUST00000020420 ENSMUSP00000020420 TRANSLATION protein_coding - CCDS35984.1 1 1199.0 0.0 5.9585 0.4 667.0 0.0 -4,-5 1.0 41 12.0 PRINCIPAL:1 ENSMUSG00000020198 Ap3d1 ENSMUST00000218610 ENSMUSP00000151820 TRANSLATION nonsense_mediated_decay start - 3 116.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000020198 Ap3d1 ENSMUST00000219816 - NO_TRANSLATION retained_intron ENSMUSG00000020198 Ap3d1 ENSMUST00000220183 - NO_TRANSLATION retained_intron ENSMUSG00000020198 Ap3d1 ENSMUST00000218125 - NO_TRANSLATION retained_intron ENSMUSG00000020198 Ap3d1 ENSMUST00000219253 - NO_TRANSLATION retained_intron ENSMUSG00000020198 Ap3d1 ENSMUST00000219356 ENSMUSP00000151355 TRANSLATION nonsense_mediated_decay start - 3 122.0 0.0 1.8945 0.0 92.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000091415 Ak9 ENSMUST00000173494 ENSMUSP00000134177 TRANSLATION protein_coding - - 5 1894.0 0.0 3.43 0.0 149.9 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000044475 Ascc1 ENSMUST00000219778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044475 Ascc1 ENSMUST00000050516 ENSMUSP00000052351 TRANSLATION protein_coding - CCDS23870.1 1 356.0 0.0 0.0 28.1 231.3 0.0 -4,-5 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000044475 Ascc1 ENSMUST00000164083 ENSMUSP00000126301 TRANSLATION protein_coding - CCDS23870.1 1 356.0 0.0 0.0 28.1 231.3 0.0 -4,-5 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000035478 Mbd3 ENSMUST00000142997 ENSMUSP00000120675 TRANSLATION protein_coding start - 2 185.0 0.0 2.8 0.0 195.9 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000035478 Mbd3 ENSMUST00000092295 ENSMUSP00000089948 TRANSLATION protein_coding - CCDS24020.1 1 285.0 0.0 4.8 0.0 288.0 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000035478 Mbd3 ENSMUST00000105348 ENSMUSP00000100985 TRANSLATION protein_coding - - 5 281.0 0.0 3.8 0.0 210.8 0.0 -4,-7 0.0296 6 5.37 MINOR ENSMUSG00000035478 Mbd3 ENSMUST00000105347 ENSMUSP00000100984 TRANSLATION protein_coding - - 2 261.0 0.0 3.8 0.0 217.2 0.0 -4,-6 0.0 6 5.754 MINOR ENSMUSG00000035478 Mbd3 ENSMUST00000105349 ENSMUSP00000100986 TRANSLATION protein_coding - CCDS78860.1 1 253.0 0.0 3.8 0.0 217.2 0.0 -4,-7 0.0161 6 5.754 MINOR ENSMUSG00000035478 Mbd3 ENSMUST00000125618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019762 Iyd ENSMUST00000019896 ENSMUSP00000019896 TRANSLATION protein_coding - CCDS56670.1 1 285.0 18.0 4.0 11.0 0.0 0.0 -2,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000019762 Iyd ENSMUST00000141745 - NO_TRANSLATION retained_intron ENSMUSG00000034949 Zfr2 ENSMUST00000117798 ENSMUSP00000113913 TRANSLATION protein_coding - CCDS48642.1 5 874.0 4.0 6.434 0.0 270.9 0.0 -4,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000034949 Zfr2 ENSMUST00000137999 ENSMUSP00000120853 TRANSLATION protein_coding start - 3 178.0 2.0 3.6 0.0 102.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034949 Zfr2 ENSMUST00000144087 ENSMUSP00000115001 TRANSLATION protein_coding stop - 1 72.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034949 Zfr2 ENSMUST00000128182 - NO_TRANSLATION retained_intron ENSMUSG00000034949 Zfr2 ENSMUST00000127526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034949 Zfr2 ENSMUST00000132174 - NO_TRANSLATION retained_intron ENSMUSG00000034949 Zfr2 ENSMUST00000148029 - NO_TRANSLATION retained_intron ENSMUSG00000111273 Or6c7 ENSMUST00000213236 ENSMUSP00000150482 TRANSLATION protein_coding - CCDS83769.1 5 312.0 0.0 1.0 12.5 168.1 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000111273 Or6c7 ENSMUST00000213992 ENSMUSP00000151052 TRANSLATION protein_coding - CCDS83769.1 5 312.0 0.0 1.0 12.5 168.1 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020053 Igf1 ENSMUST00000105300 ENSMUSP00000100937 TRANSLATION protein_coding - CCDS24104.2 1 159.0 0.0 1.8 5.9 58.5 0.0 -3,-4 0.4911 2 13.02 MINOR ENSMUSG00000020053 Igf1 ENSMUST00000126490 ENSMUSP00000122188 TRANSLATION protein_coding stop - 3 135.0 0.0 1.8 0.0 58.5 0.0 2,-2 0.0736 2 -2.0 MINOR ENSMUSG00000020053 Igf1 ENSMUST00000122386 ENSMUSP00000113905 TRANSLATION protein_coding - CCDS48661.1 1 153.0 0.0 1.8 20.2 58.5 0.0 -3,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000020053 Igf1 ENSMUST00000122100 ENSMUSP00000112878 TRANSLATION protein_coding - CCDS48662.1 1 143.0 0.0 1.8 1.0 58.5 0.0 2,-2 0.3242 2 12.0 MINOR ENSMUSG00000020053 Igf1 ENSMUST00000062862 ENSMUSP00000056668 TRANSLATION protein_coding - - 2 165.0 0.0 1.8 0.0 58.5 0.0 2,-2 0.073 2 12.0 MINOR ENSMUSG00000020053 Igf1 ENSMUST00000095360 ENSMUSP00000093005 TRANSLATION protein_coding - CCDS48661.1 1 153.0 0.0 1.8 20.2 58.5 0.0 -3,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000020053 Igf1 ENSMUST00000121161 ENSMUSP00000114120 TRANSLATION protein_coding - CCDS48663.1 1 137.0 0.0 1.8 7.8 58.5 0.0 2,-2 0.4473 2 13.416 MINOR ENSMUSG00000020053 Igf1 ENSMUST00000121952 ENSMUSP00000113177 TRANSLATION protein_coding - CCDS48663.1 3 137.0 0.0 1.8 7.8 58.5 0.0 2,-2 0.4473 2 13.416 MINOR ENSMUSG00000071065 Or6c213 ENSMUST00000095245 ENSMUSP00000092873 TRANSLATION protein_coding - CCDS24333.1 - 313.0 0.0 1.0 6.1 176.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000071065 Or6c213 ENSMUST00000213239 ENSMUSP00000149115 TRANSLATION protein_coding - CCDS24333.1 5 313.0 0.0 1.0 6.1 176.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000071065 Or6c213 ENSMUST00000215142 ENSMUSP00000150380 TRANSLATION protein_coding - CCDS24333.1 3 313.0 0.0 1.0 6.1 176.4 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032788 Pdxk ENSMUST00000218245 - NO_TRANSLATION retained_intron ENSMUSG00000032788 Pdxk ENSMUST00000041616 ENSMUSP00000038540 TRANSLATION protein_coding - CCDS23965.1 1 312.0 20.0 8.5 23.7 31.9 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000044071 Tafa2 ENSMUST00000050756 ENSMUSP00000050199 TRANSLATION protein_coding - CCDS48709.1 1 135.0 0.0 2.0 0.0 162.3 0.0 -1,-4 0.2825 2 12.0 MINOR ENSMUSG00000044071 Tafa2 ENSMUST00000219723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044071 Tafa2 ENSMUST00000238972 ENSMUSP00000159016 TRANSLATION protein_coding - - - 131.0 0.0 2.0 35.1 162.3 0.0 1,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000044071 Tafa2 ENSMUST00000218926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038248 Sobp ENSMUST00000189987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038248 Sobp ENSMUST00000040275 ENSMUSP00000040072 TRANSLATION protein_coding - CCDS35890.1 1 864.0 4.0 0.0 2.5 305.9 0.0 -4,-5 1.0 2 11.0 PRINCIPAL:1 ENSMUSG00000049894 Or6c65 ENSMUST00000060636 ENSMUSP00000059714 TRANSLATION protein_coding - CCDS24335.1 - 312.0 0.0 1.0 12.5 180.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049894 Or6c65 ENSMUST00000203236 ENSMUSP00000145315 TRANSLATION protein_coding - CCDS24335.1 2 312.0 0.0 1.0 12.5 180.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000112495 Cdc5lrt9 ENSMUST00000177744 ENSMUSP00000151669 TRANSLATION protein_coding - - - 802.0 0.0 0.6 30.9 345.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000064030 Pym1 ENSMUST00000218218 ENSMUSP00000151691 TRANSLATION protein_coding - - 3 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000064030 Pym1 ENSMUST00000065210 ENSMUSP00000067623 TRANSLATION protein_coding - CCDS48730.1 1 202.0 0.0 1.0 0.0 50.7 0.0 -4,-5 0.63 4 8.0 ALTERNATIVE:2 ENSMUSG00000064030 Pym1 ENSMUST00000163377 ENSMUSP00000129789 TRANSLATION protein_coding - CCDS48729.1 1 203.0 0.0 1.0 0.0 49.4 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000020190 Mknk2 ENSMUST00000003433 ENSMUSP00000003433 TRANSLATION protein_coding - - 1 412.0 22.0 6.58 2.9 221.1 0.0 -4,-5 0.2868 6 18.723 MINOR ENSMUSG00000020190 Mknk2 ENSMUST00000197276 ENSMUSP00000143679 TRANSLATION protein_coding stop - 3 118.0 8.0 2.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000020190 Mknk2 ENSMUST00000198819 ENSMUSP00000142388 TRANSLATION protein_coding stop - 5 49.0 4.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020190 Mknk2 ENSMUST00000200082 ENSMUSP00000143508 TRANSLATION protein_coding - CCDS24030.2 1 459.0 22.0 6.58 8.9 221.1 0.0 -4,-7 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000020190 Mknk2 ENSMUST00000199949 ENSMUSP00000143655 TRANSLATION protein_coding stop - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000037990 Sh3rf3 ENSMUST00000153031 ENSMUSP00000120938 TRANSLATION protein_coding - CCDS35906.2 1 878.0 8.0 3.2 1.1 212.5 0.0 -3,-6 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000037990 Sh3rf3 ENSMUST00000148267 - NO_TRANSLATION retained_intron ENSMUSG00000037990 Sh3rf3 ENSMUST00000135526 ENSMUSP00000114368 TRANSLATION protein_coding - - 1 438.0 8.0 1.56 0.0 107.2 0.0 -3,-6 0.0 - 8.718 MINOR ENSMUSG00000037990 Sh3rf3 ENSMUST00000133151 - NO_TRANSLATION retained_intron ENSMUSG00000037990 Sh3rf3 ENSMUST00000152924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020227 Irak3 ENSMUST00000140237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020227 Irak3 ENSMUST00000135106 ENSMUSP00000123604 TRANSLATION nonsense_mediated_decay - - 1 309.0 0.0 6.14 0.0 112.7 0.0 -1,-3 0.0015 3 -2.0 MINOR ENSMUSG00000020227 Irak3 ENSMUST00000143100 - NO_TRANSLATION retained_intron ENSMUSG00000020227 Irak3 ENSMUST00000145665 ENSMUSP00000118038 TRANSLATION protein_coding - - 1 517.0 0.0 6.39 0.1 123.7 0.0 -4,-7 0.0 4 4.944 MINOR ENSMUSG00000020227 Irak3 ENSMUST00000020448 ENSMUSP00000020448 TRANSLATION protein_coding - CCDS24204.1 1 609.0 0.0 8.39 0.1 174.6 0.0 -1,-3 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000020105 Lrig3 ENSMUST00000217813 - NO_TRANSLATION retained_intron ENSMUSG00000020105 Lrig3 ENSMUST00000219974 - NO_TRANSLATION retained_intron ENSMUSG00000020105 Lrig3 ENSMUST00000220332 - NO_TRANSLATION retained_intron ENSMUSG00000020105 Lrig3 ENSMUST00000074807 ENSMUSP00000074360 TRANSLATION protein_coding - CCDS24219.1 1 1117.0 0.0 11.69 5.6 360.4 0.0 4,-1 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000020105 Lrig3 ENSMUST00000218593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020105 Lrig3 ENSMUST00000218363 - NO_TRANSLATION retained_intron ENSMUSG00000020105 Lrig3 ENSMUST00000218580 - NO_TRANSLATION retained_intron ENSMUSG00000071359 Tbpl1 ENSMUST00000138022 - NO_TRANSLATION retained_intron ENSMUSG00000071359 Tbpl1 ENSMUST00000127698 ENSMUSP00000114223 TRANSLATION protein_coding - CCDS23730.1 1 186.0 0.0 5.25 35.0 151.7 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000071359 Tbpl1 ENSMUST00000141569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071359 Tbpl1 ENSMUST00000095794 ENSMUSP00000093470 TRANSLATION protein_coding - CCDS23730.1 1 186.0 0.0 5.25 35.0 151.7 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000019923 Zwint ENSMUST00000163046 - NO_TRANSLATION retained_intron ENSMUSG00000019923 Zwint ENSMUST00000105431 ENSMUSP00000101071 TRANSLATION protein_coding - CCDS23920.1 1 252.0 0.0 0.0 0.0 273.5 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000019923 Zwint ENSMUST00000219352 ENSMUSP00000151725 TRANSLATION protein_coding start/stop - 1 126.0 0.0 0.0 0.0 174.2 0.0 -4,-7 0.0002 3 -2.0 MINOR ENSMUSG00000019923 Zwint ENSMUST00000160128 - NO_TRANSLATION retained_intron ENSMUSG00000019923 Zwint ENSMUST00000020081 ENSMUSP00000020081 TRANSLATION protein_coding - CCDS23920.1 1 252.0 0.0 0.0 0.0 273.5 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000019923 Zwint ENSMUST00000160337 ENSMUSP00000124429 TRANSLATION protein_coding - CCDS23920.1 1 252.0 0.0 0.0 0.0 273.5 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000019850 Tnfaip3 ENSMUST00000146388 ENSMUSP00000120627 TRANSLATION protein_coding stop - 2 86.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000019850 Tnfaip3 ENSMUST00000154749 - NO_TRANSLATION retained_intron ENSMUSG00000019850 Tnfaip3 ENSMUST00000019997 ENSMUSP00000019997 TRANSLATION protein_coding - CCDS23715.1 1 775.0 0.0 6.85 0.4 222.8 0.0 -4,-7 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000019850 Tnfaip3 ENSMUST00000154590 - NO_TRANSLATION retained_intron ENSMUSG00000019850 Tnfaip3 ENSMUST00000122863 ENSMUSP00000116318 TRANSLATION protein_coding stop - 5 121.0 0.0 2.25 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000019850 Tnfaip3 ENSMUST00000105527 ENSMUSP00000101167 TRANSLATION protein_coding - CCDS23715.1 1 775.0 0.0 6.85 0.4 222.8 0.0 -4,-7 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000034854 Mfsd12 ENSMUST00000132368 ENSMUSP00000120259 TRANSLATION nonsense_mediated_decay - - 5 133.0 0.0 0.5 0.0 28.3 1.0 -4,-7 0.0023 - -2.0 MINOR ENSMUSG00000034854 Mfsd12 ENSMUST00000044844 ENSMUSP00000036116 TRANSLATION protein_coding - CCDS35996.1 1 476.0 0.0 1.175 0.1 103.8 10.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094186 Gm1553 ENSMUST00000177934 ENSMUSP00000135907 TRANSLATION protein_coding - CCDS56738.1 1 94.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.9479 2 0.0 PRINCIPAL:1 ENSMUSG00000019936 Epyc ENSMUST00000105285 ENSMUSP00000100922 TRANSLATION protein_coding - CCDS24143.1 1 322.0 0.0 4.0 17.2 45.6 0.0 4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000019936 Epyc ENSMUST00000020094 ENSMUSP00000020094 TRANSLATION protein_coding - CCDS24143.1 1 322.0 0.0 4.0 17.2 45.6 0.0 4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000000731 Aire ENSMUST00000154374 ENSMUSP00000117094 TRANSLATION protein_coding - CCDS70055.1 1 493.0 17.0 3.398 0.0 149.2 0.0 -4,-7 0.1462 - 13.682 ALTERNATIVE:2 ENSMUSG00000000731 Aire ENSMUST00000148469 ENSMUSP00000118317 TRANSLATION protein_coding - CCDS70059.1 1 405.0 9.0 1.998 0.1 149.2 0.0 -4,-7 0.1208 - 5.546 MINOR ENSMUSG00000000731 Aire ENSMUST00000131028 ENSMUSP00000114808 TRANSLATION nonsense_mediated_decay - - 1 67.0 0.0 0.0 0.0 40.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000000731 Aire ENSMUST00000128241 ENSMUSP00000114904 TRANSLATION protein_coding - CCDS23961.1 1 552.0 17.0 3.558 0.1 149.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000000731 Aire ENSMUST00000145975 ENSMUSP00000120150 TRANSLATION protein_coding - CCDS70060.1 1 548.0 17.0 3.558 0.1 149.2 0.0 -4,-7 0.4548 - 14.0 ALTERNATIVE:2 ENSMUSG00000000731 Aire ENSMUST00000155021 ENSMUSP00000122190 TRANSLATION protein_coding - CCDS70057.1 1 488.0 17.0 3.398 0.0 149.2 0.0 -4,-7 0.1468 - 13.682 ALTERNATIVE:2 ENSMUSG00000000731 Aire ENSMUST00000143548 - NO_TRANSLATION retained_intron ENSMUSG00000000731 Aire ENSMUST00000143735 ENSMUSP00000123678 TRANSLATION nonsense_mediated_decay - - 1 317.0 0.0 0.198 0.0 113.1 0.0 -4,-7 0.0036 - -2.0 MINOR ENSMUSG00000000731 Aire ENSMUST00000140636 ENSMUSP00000121477 TRANSLATION protein_coding - CCDS70056.1 1 404.0 9.0 1.998 0.1 149.2 0.0 -4,-7 0.1208 - 5.546 MINOR ENSMUSG00000000731 Aire ENSMUST00000105395 ENSMUSP00000101034 TRANSLATION protein_coding - CCDS70054.1 1 409.0 9.0 1.998 0.0 149.2 0.0 -4,-7 0.1208 - 5.546 MINOR ENSMUSG00000000731 Aire ENSMUST00000156417 ENSMUSP00000115162 TRANSLATION protein_coding - CCDS70051.1 1 408.0 9.0 1.998 0.1 149.2 0.0 -4,-7 0.1208 - 5.546 MINOR ENSMUSG00000000731 Aire ENSMUST00000105396 ENSMUSP00000101035 TRANSLATION protein_coding - CCDS70052.1 1 492.0 17.0 3.398 0.0 149.2 0.0 -4,-7 0.1462 - 13.682 ALTERNATIVE:2 ENSMUSG00000000731 Aire ENSMUST00000130972 ENSMUSP00000122659 TRANSLATION protein_coding - CCDS70058.1 1 547.0 17.0 3.558 0.1 149.2 0.0 -4,-7 0.4298 - 14.0 ALTERNATIVE:2 ENSMUSG00000000731 Aire ENSMUST00000143452 - NO_TRANSLATION retained_intron ENSMUSG00000000731 Aire ENSMUST00000019257 ENSMUSP00000019257 TRANSLATION protein_coding - CCDS70053.1 1 551.0 17.0 3.558 0.1 149.2 0.0 -4,-7 0.799 - 14.0 ALTERNATIVE:2 ENSMUSG00000000731 Aire ENSMUST00000141255 - NO_TRANSLATION retained_intron ENSMUSG00000015890 Amdhd1 ENSMUST00000016034 ENSMUSP00000016034 TRANSLATION protein_coding - CCDS48671.1 1 426.0 4.0 8.5 0.0 70.1 0.0 -4,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000019768 Esr1 ENSMUST00000127145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019768 Esr1 ENSMUST00000067086 ENSMUSP00000070070 TRANSLATION protein_coding - CCDS56678.1 1 599.0 29.0 4.8 8.0 511.8 0.0 -4,-6 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000019768 Esr1 ENSMUST00000105589 ENSMUSP00000101214 TRANSLATION protein_coding - CCDS56678.1 1 599.0 29.0 4.8 8.0 511.8 0.0 -4,-6 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000019768 Esr1 ENSMUST00000105590 ENSMUSP00000101215 TRANSLATION protein_coding - CCDS56678.1 1 599.0 29.0 4.8 8.0 511.8 0.0 -4,-6 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000019768 Esr1 ENSMUST00000137012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019768 Esr1 ENSMUST00000133985 - NO_TRANSLATION retained_intron ENSMUSG00000019768 Esr1 ENSMUST00000149195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019768 Esr1 ENSMUST00000127934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019768 Esr1 ENSMUST00000105588 ENSMUSP00000101213 TRANSLATION protein_coding - - 5 499.0 24.0 2.0 0.0 378.0 0.0 -4,-6 0.0013 5 3.066 MINOR ENSMUSG00000019768 Esr1 ENSMUST00000138828 - NO_TRANSLATION retained_intron ENSMUSG00000045680 Tcf21 ENSMUST00000049930 ENSMUSP00000053178 TRANSLATION protein_coding - CCDS23732.1 1 179.0 0.0 0.8 29.9 59.8 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000045680 Tcf21 ENSMUST00000218002 ENSMUSP00000151767 TRANSLATION protein_coding - - - 169.0 0.0 0.8 0.0 59.8 0.0 -4,-5 0.0359 2 12.0 MINOR ENSMUSG00000112160 BC024063 ENSMUST00000220287 ENSMUSP00000151688 TRANSLATION protein_coding - - 2 749.0 90.0 1.0 0.1 448.5 0.0 -4,-5 0.8588 - 18.0 PRINCIPAL:1 ENSMUSG00000020086 Macroh2a2 ENSMUST00000020283 ENSMUSP00000020283 TRANSLATION protein_coding - CCDS23885.1 1 372.0 0.0 7.6 30.9 202.6 0.0 -4,-2 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000078451 Ppil6 ENSMUST00000105507 ENSMUSP00000101146 TRANSLATION protein_coding - CCDS48548.1 1 313.0 8.0 7.33 8.5 133.6 0.0 -4,-2 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000078451 Ppil6 ENSMUST00000214145 ENSMUSP00000149689 TRANSLATION protein_coding start - 3 144.0 8.0 3.5 0.0 112.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000078451 Ppil6 ENSMUST00000215608 - NO_TRANSLATION retained_intron ENSMUSG00000071253 Slc25a16 ENSMUST00000152350 - NO_TRANSLATION retained_intron ENSMUSG00000071253 Slc25a16 ENSMUST00000138597 - NO_TRANSLATION retained_intron ENSMUSG00000071253 Slc25a16 ENSMUST00000044977 ENSMUSP00000043370 TRANSLATION protein_coding - CCDS23893.1 1 332.0 14.0 7.75 0.1 238.5 0.0 -2,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000071253 Slc25a16 ENSMUST00000144459 ENSMUSP00000114510 TRANSLATION protein_coding stop - 5 322.0 14.0 7.25 0.0 212.5 0.0 -2,-5 0.0613 5 -2.0 MINOR ENSMUSG00000038214 Bend3 ENSMUST00000216679 ENSMUSP00000150624 TRANSLATION protein_coding stop - 5 159.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038214 Bend3 ENSMUST00000167488 ENSMUSP00000127351 TRANSLATION protein_coding - CCDS35892.1 2 825.0 0.0 0.0 10.3 233.3 0.0 -4,-5 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000038214 Bend3 ENSMUST00000214116 ENSMUSP00000149839 TRANSLATION protein_coding stop - 2 144.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000069430 Or10p22 ENSMUST00000091996 ENSMUSP00000089622 TRANSLATION protein_coding - CCDS24302.1 - 312.0 0.0 1.0 9.8 160.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037151 Lrrc20 ENSMUST00000049242 ENSMUSP00000048042 TRANSLATION protein_coding - CCDS23881.1 1 184.0 0.0 3.75 11.0 27.3 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000048661 Lemd3 ENSMUST00000119093 ENSMUSP00000112661 TRANSLATION protein_coding - - 2 940.0 0.0 7.1385 0.0 63.2 1.0 -4,-5 0.1531 15 10.5 MINOR ENSMUSG00000048661 Lemd3 ENSMUST00000119944 ENSMUSP00000113103 TRANSLATION protein_coding - CCDS48703.1 1 918.0 0.0 7.8885 0.0 63.2 1.0 -4,-5 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000001783 Rtcb ENSMUST00000139413 - NO_TRANSLATION retained_intron ENSMUSG00000001783 Rtcb ENSMUST00000001834 ENSMUSP00000001834 TRANSLATION protein_coding - CCDS24094.1 1 505.0 23.0 11.5 33.9 0.0 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000057729 Prtn3 ENSMUST00000165982 - NO_TRANSLATION retained_intron ENSMUSG00000057729 Prtn3 ENSMUST00000171489 - NO_TRANSLATION retained_intron ENSMUSG00000057729 Prtn3 ENSMUST00000164134 - NO_TRANSLATION retained_intron ENSMUSG00000057729 Prtn3 ENSMUST00000166201 ENSMUSP00000129585 TRANSLATION protein_coding start - 3 126.0 4.0 2.0 0.0 76.5 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000057729 Prtn3 ENSMUST00000006679 ENSMUSP00000006679 TRANSLATION protein_coding - CCDS23993.1 1 254.0 13.0 4.0 0.1 198.7 0.0 2,-1 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000057729 Prtn3 ENSMUST00000163188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058799 Nap1l1 ENSMUST00000219143 ENSMUSP00000151507 TRANSLATION protein_coding - - 1 368.0 0.0 6.505 0.0 367.6 0.0 -4,-5 0.0617 8 12.0 MINOR ENSMUSG00000058799 Nap1l1 ENSMUST00000219718 - NO_TRANSLATION retained_intron ENSMUSG00000058799 Nap1l1 ENSMUST00000218982 - NO_TRANSLATION retained_intron ENSMUSG00000058799 Nap1l1 ENSMUST00000219961 ENSMUSP00000151700 TRANSLATION protein_coding - - 1 383.0 0.0 6.505 8.5 367.6 0.0 -4,-5 0.4377 8 12.932 MINOR ENSMUSG00000058799 Nap1l1 ENSMUST00000217908 ENSMUSP00000151750 TRANSLATION protein_coding - CCDS36058.1 1 391.0 0.0 6.505 33.2 367.6 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000058799 Nap1l1 ENSMUST00000218828 ENSMUSP00000151972 TRANSLATION protein_coding - CCDS36058.1 1 391.0 0.0 6.505 33.2 367.6 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000058799 Nap1l1 ENSMUST00000065917 ENSMUSP00000070068 TRANSLATION protein_coding - CCDS36058.1 1 391.0 0.0 6.505 33.2 367.6 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000059762 Or6c8 ENSMUST00000082131 ENSMUSP00000080775 TRANSLATION protein_coding - CCDS24304.1 - 309.0 0.0 1.0 12.5 167.0 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059762 Or6c8 ENSMUST00000213579 ENSMUSP00000150151 TRANSLATION protein_coding - CCDS24304.1 5 309.0 0.0 1.0 12.5 167.0 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094622 Gm3055 ENSMUST00000218939 ENSMUSP00000151912 TRANSLATION protein_coding - - 1 243.0 0.0 2.6 0.0 75.8 0.0 -4,-5 0.3693 - 8.094 PRINCIPAL:1 ENSMUSG00000094622 Gm3055 ENSMUST00000219864 ENSMUSP00000151476 TRANSLATION protein_coding stop - 3 186.0 11.0 2.75 0.0 135.4 0.0 -4,-5 0.0325 - -2.0 MINOR ENSMUSG00000009092 Derl3 ENSMUST00000219994 - NO_TRANSLATION retained_intron ENSMUSG00000009092 Derl3 ENSMUST00000218718 - NO_TRANSLATION retained_intron ENSMUSG00000009092 Derl3 ENSMUST00000218506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009092 Derl3 ENSMUST00000219568 - NO_TRANSLATION retained_intron ENSMUSG00000009092 Derl3 ENSMUST00000009236 ENSMUSP00000009236 TRANSLATION protein_coding - CCDS23935.1 1 228.0 0.0 5.95 4.1 255.8 2.0 -2,-3 1.0 1 10.0 PRINCIPAL:2 ENSMUSG00000009092 Derl3 ENSMUST00000217811 ENSMUSP00000151623 TRANSLATION protein_coding - - 1 227.0 0.0 5.8 4.1 248.1 2.0 -1,-3 0.3901 1 9.7 ALTERNATIVE:2 ENSMUSG00000009092 Derl3 ENSMUST00000218932 - NO_TRANSLATION retained_intron ENSMUSG00000009092 Derl3 ENSMUST00000220190 - NO_TRANSLATION retained_intron ENSMUSG00000019894 Slc6a15 ENSMUST00000217905 ENSMUSP00000151517 TRANSLATION protein_coding stop - 3 127.0 5.0 1.6 0.0 125.3 1.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019894 Slc6a15 ENSMUST00000179636 ENSMUSP00000136676 TRANSLATION protein_coding - CCDS24156.1 1 729.0 8.0 10.95 27.2 755.0 9.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000019894 Slc6a15 ENSMUST00000218844 - NO_TRANSLATION retained_intron ENSMUSG00000019894 Slc6a15 ENSMUST00000074204 ENSMUSP00000073829 TRANSLATION protein_coding - CCDS24156.1 1 729.0 8.0 10.95 27.2 755.0 9.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000019894 Slc6a15 ENSMUST00000219936 - NO_TRANSLATION retained_intron ENSMUSG00000000766 Oprm1 ENSMUST00000052751 ENSMUSP00000060329 TRANSLATION protein_coding - CCDS78788.1 1 393.0 0.0 4.0 1.1 200.8 18.0 -4,-5 0.5311 1 5.373 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000135502 ENSMUSP00000135143 TRANSLATION protein_coding - - 1 416.0 0.0 4.0 1.0 200.8 18.0 -4,-5 0.1362 1 5.34 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000092729 ENSMUSP00000090405 TRANSLATION nonsense_mediated_decay - - 1 388.0 0.0 4.0 1.1 200.8 18.0 -4,-5 0.2234 1 -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000123861 ENSMUSP00000120187 TRANSLATION nonsense_mediated_decay - - 1 222.0 0.0 1.4 0.0 0.0 2.0 -4,-5 0.0018 - -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000150374 ENSMUSP00000114856 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000143875 ENSMUSP00000123617 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000105601 ENSMUSP00000101226 TRANSLATION nonsense_mediated_decay - - 1 222.0 0.0 1.4 0.0 0.0 2.0 -4,-5 0.0018 - -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000000783 ENSMUSP00000000783 TRANSLATION protein_coding - - 1 425.0 0.0 4.0 0.0 200.8 18.0 -4,-5 0.027 1 5.34 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000154906 ENSMUSP00000114342 TRANSLATION protein_coding - CCDS83672.1 1 409.0 0.0 4.0 0.0 200.8 18.0 -4,-5 0.118 1 5.34 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000105607 ENSMUSP00000101232 TRANSLATION protein_coding - CCDS78787.1 1 398.0 0.0 4.0 10.4 200.8 18.0 -4,-5 1.0 1 8.34 PRINCIPAL:4 ENSMUSG00000000766 Oprm1 ENSMUST00000105604 ENSMUSP00000101229 TRANSLATION protein_coding - - 5 393.0 0.0 4.33 9.3 200.8 18.0 -4,-5 0.8925 1 8.649 ALTERNATIVE:1 ENSMUSG00000000766 Oprm1 ENSMUST00000105605 ENSMUSP00000101230 TRANSLATION protein_coding - CCDS83673.1 1 391.0 0.0 4.0 1.7 200.8 18.0 -4,-5 0.3914 1 5.562 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000147171 ENSMUSP00000117950 TRANSLATION nonsense_mediated_decay - CCDS78783.1 5 330.0 0.0 2.6 0.0 188.0 16.0 -4,-7 0.0437 1 -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000105602 ENSMUSP00000101227 TRANSLATION protein_coding - CCDS83674.1 1 390.0 0.0 4.0 1.1 200.8 18.0 -4,-5 0.3846 1 5.373 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000133486 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000766 Oprm1 ENSMUST00000105597 ENSMUSP00000101222 TRANSLATION nonsense_mediated_decay - - 1 39.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000152674 ENSMUSP00000115552 TRANSLATION protein_coding - - 3 104.0 0.0 1.4 0.0 0.0 2.0 -4,-5 0.0002 - 0.138 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000063036 ENSMUSP00000053498 TRANSLATION protein_coding - CCDS78785.1 1 325.0 0.0 2.6 0.0 188.0 16.0 -4,-7 0.0437 1 2.538 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000056385 ENSMUSP00000060590 TRANSLATION protein_coding - CCDS78787.1 1 398.0 0.0 4.0 10.4 200.8 18.0 -4,-5 1.0 1 8.34 PRINCIPAL:4 ENSMUSG00000000766 Oprm1 ENSMUST00000144264 ENSMUSP00000115836 TRANSLATION nonsense_mediated_decay - - 1 399.0 0.0 4.0 0.0 200.8 18.0 -4,-5 0.0877 1 -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000141897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000766 Oprm1 ENSMUST00000129954 ENSMUSP00000122385 TRANSLATION nonsense_mediated_decay - - 1 448.0 0.0 4.0 0.0 200.8 18.0 -4,-5 0.0275 1 -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000105611 ENSMUSP00000101236 TRANSLATION protein_coding - CCDS56687.1 1 438.0 0.0 4.0 0.0 200.8 18.0 -4,-5 0.0966 1 5.34 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000154941 ENSMUSP00000115413 TRANSLATION nonsense_mediated_decay - - 1 337.0 0.0 3.6 0.0 200.8 18.0 -1,-5 0.0377 1 -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000105615 ENSMUSP00000101240 TRANSLATION protein_coding - CCDS78784.1 1 370.0 0.0 2.6 0.0 188.0 16.0 -4,-7 0.0447 1 2.538 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000078634 ENSMUSP00000077704 TRANSLATION protein_coding - - 1 456.0 0.0 4.0 0.0 200.8 18.0 -4,-5 0.0275 1 5.34 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000092734 ENSMUSP00000090410 TRANSLATION protein_coding - CCDS78787.1 1 398.0 0.0 4.0 10.4 200.8 18.0 -4,-5 1.0 1 8.34 PRINCIPAL:4 ENSMUSG00000000766 Oprm1 ENSMUST00000092731 ENSMUSP00000090407 TRANSLATION protein_coding - - 1 392.0 0.0 4.198 0.1 200.8 18.0 -4,-5 0.2062 1 5.736 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000129221 ENSMUSP00000123117 TRANSLATION nonsense_mediated_decay - - 1 356.0 0.0 3.6 0.0 200.8 18.0 -1,-5 0.0368 1 -2.0 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000105603 ENSMUSP00000101228 TRANSLATION protein_coding - - 5 389.0 0.0 4.0 1.1 200.8 18.0 -4,-5 0.2285 1 5.373 MINOR ENSMUSG00000000766 Oprm1 ENSMUST00000148625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020181 Nav3 ENSMUST00000160159 - NO_TRANSLATION retained_intron ENSMUSG00000020181 Nav3 ENSMUST00000238286 ENSMUSP00000158790 TRANSLATION protein_coding - - - 1844.0 8.0 0.0 1.0 23.1 0.0 -4,-7 0.0806 14 6.0 MINOR ENSMUSG00000020181 Nav3 ENSMUST00000032719 ENSMUSP00000032719 TRANSLATION protein_coding - CCDS36054.1 5 2366.0 8.0 2.85 5.0 77.0 0.0 -4,-2 0.9739 18 15.1 ALTERNATIVE:1 ENSMUSG00000020181 Nav3 ENSMUST00000161798 - NO_TRANSLATION retained_intron ENSMUSG00000020181 Nav3 ENSMUST00000239301 ENSMUSP00000159239 TRANSLATION protein_coding - - - 2309.0 8.0 3.3 4.2 79.8 0.0 -4,-5 1.0 18 15.6 PRINCIPAL:4 ENSMUSG00000020181 Nav3 ENSMUST00000161582 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020181 Nav3 ENSMUST00000163071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020181 Nav3 ENSMUST00000161223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047626 Or6c2 ENSMUST00000217228 ENSMUSP00000150497 TRANSLATION protein_coding - CCDS24321.1 5 312.0 0.0 1.0 11.5 151.9 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047626 Or6c2 ENSMUST00000057477 ENSMUSP00000052722 TRANSLATION protein_coding - CCDS24321.1 - 312.0 0.0 1.0 11.5 151.9 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019927 Ube2d1 ENSMUST00000144231 - NO_TRANSLATION retained_intron ENSMUSG00000019927 Ube2d1 ENSMUST00000144636 - NO_TRANSLATION retained_intron ENSMUSG00000019927 Ube2d1 ENSMUST00000020085 ENSMUSP00000020085 TRANSLATION protein_coding - CCDS35933.1 1 147.0 0.0 4.66 34.9 181.8 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000039878 Slc39a5 ENSMUST00000218858 ENSMUSP00000151742 TRANSLATION protein_coding stop - 5 114.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000039878 Slc39a5 ENSMUST00000042666 ENSMUSP00000037753 TRANSLATION protein_coding - CCDS24275.1 1 535.0 0.0 2.05 9.1 239.0 4.0 0,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000039878 Slc39a5 ENSMUST00000167859 ENSMUSP00000131736 TRANSLATION protein_coding - CCDS24275.1 1 535.0 0.0 2.05 9.1 239.0 4.0 0,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000039878 Slc39a5 ENSMUST00000219222 - NO_TRANSLATION retained_intron ENSMUSG00000039878 Slc39a5 ENSMUST00000219131 ENSMUSP00000151727 TRANSLATION protein_coding stop - 5 176.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0 1 -2.0 MINOR ENSMUSG00000094913 Gm9507 ENSMUST00000180157 ENSMUSP00000136824 TRANSLATION protein_coding stop - - 218.0 0.0 0.0 0.0 72.1 0.0 -4,-5 0.1382 - -2.0 MINOR ENSMUSG00000094913 Gm9507 ENSMUST00000095491 ENSMUSP00000093145 TRANSLATION protein_coding - - - 223.0 0.0 0.0 0.0 75.3 0.0 -4,-5 0.7167 - 6.0 PRINCIPAL:1 ENSMUSG00000018166 Erbb3 ENSMUST00000082059 ENSMUSP00000080716 TRANSLATION protein_coding - CCDS24283.1 1 1339.0 0.0 20.9 8.1 736.0 0.0 4,-1 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000015757 Ppil4 ENSMUST00000143214 ENSMUSP00000119332 TRANSLATION nonsense_mediated_decay - - 5 68.0 2.0 2.25 0.0 57.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000015757 Ppil4 ENSMUST00000015901 ENSMUSP00000015901 TRANSLATION protein_coding - CCDS23690.1 1 492.0 7.0 3.85 9.7 191.9 0.0 -4,-7 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000015757 Ppil4 ENSMUST00000138151 - NO_TRANSLATION retained_intron ENSMUSG00000015757 Ppil4 ENSMUST00000137346 - NO_TRANSLATION retained_intron ENSMUSG00000034057 Myrfl ENSMUST00000048229 ENSMUSP00000037477 TRANSLATION protein_coding - CCDS36066.1 1 904.0 0.0 3.95 0.3 391.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000009293 Ube2g2 ENSMUST00000173360 - NO_TRANSLATION retained_intron ENSMUSG00000009293 Ube2g2 ENSMUST00000172813 ENSMUSP00000134670 TRANSLATION protein_coding stop - 5 71.0 0.0 2.0 0.0 72.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000009293 Ube2g2 ENSMUST00000174546 ENSMUSP00000134208 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009293 Ube2g2 ENSMUST00000174510 ENSMUSP00000133515 TRANSLATION protein_coding - CCDS56722.1 1 165.0 0.0 5.25 27.0 164.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000009293 Ube2g2 ENSMUST00000172772 ENSMUSP00000134397 TRANSLATION protein_coding start/stop - 1 96.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020307 Cdc34 ENSMUST00000219389 ENSMUSP00000151998 TRANSLATION protein_coding stop - 2 86.0 0.0 2.91 0.0 69.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020307 Cdc34 ENSMUST00000218964 ENSMUSP00000152000 TRANSLATION protein_coding start - 5 159.0 0.0 4.99 0.0 143.8 0.0 -4,-5 0.0035 1 -2.0 MINOR ENSMUSG00000020307 Cdc34 ENSMUST00000219074 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020307 Cdc34 ENSMUST00000218938 ENSMUSP00000151880 TRANSLATION protein_coding stop - 3 44.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020307 Cdc34 ENSMUST00000220328 ENSMUSP00000151790 TRANSLATION protein_coding start - 3 116.0 0.0 2.58 0.0 43.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020307 Cdc34 ENSMUST00000219930 ENSMUSP00000151798 TRANSLATION protein_coding start - 3 162.0 0.0 4.66 0.0 145.7 0.0 -4,-5 0.0016 1 -2.0 MINOR ENSMUSG00000020307 Cdc34 ENSMUST00000020550 ENSMUSP00000020550 TRANSLATION protein_coding - CCDS23983.1 1 235.0 0.0 5.99 17.9 147.0 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000020307 Cdc34 ENSMUST00000219791 ENSMUSP00000151763 TRANSLATION protein_coding - - 3 190.0 0.0 4.41 0.0 112.7 0.0 -4,-6 0.0 1 6.78 MINOR ENSMUSG00000020307 Cdc34 ENSMUST00000220133 - NO_TRANSLATION retained_intron ENSMUSG00000020307 Cdc34 ENSMUST00000217689 - NO_TRANSLATION retained_intron ENSMUSG00000019791 Hint3 ENSMUST00000161074 ENSMUSP00000125552 TRANSLATION protein_coding - CCDS23764.1 1 165.0 21.0 4.08 1.1 114.4 0.0 -4,-5 0.8895 5 16.988 PRINCIPAL:1 ENSMUSG00000019791 Hint3 ENSMUST00000019925 ENSMUSP00000019925 TRANSLATION protein_coding start/stop - 3 164.0 22.0 4.278 3.0 109.0 0.0 -4,-5 1.0 4 -2.0 MINOR ENSMUSG00000019791 Hint3 ENSMUST00000214782 - NO_TRANSLATION retained_intron ENSMUSG00000019791 Hint3 ENSMUST00000216617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019791 Hint3 ENSMUST00000160646 ENSMUSP00000125125 TRANSLATION nonsense_mediated_decay start - 3 86.0 12.0 2.0 0.0 61.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000019791 Hint3 ENSMUST00000217266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035459 Stab2 ENSMUST00000219341 ENSMUSP00000151465 TRANSLATION nonsense_mediated_decay start - 5 870.0 0.0 8.8565 0.0 428.7 0.0 -4,-5 0.0056 12 -2.0 MINOR ENSMUSG00000035459 Stab2 ENSMUST00000218366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035459 Stab2 ENSMUST00000219612 - NO_TRANSLATION retained_intron ENSMUSG00000035459 Stab2 ENSMUST00000218408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035459 Stab2 ENSMUST00000219659 - NO_TRANSLATION retained_intron ENSMUSG00000035459 Stab2 ENSMUST00000219280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035459 Stab2 ENSMUST00000035288 ENSMUSP00000048309 TRANSLATION protein_coding - CCDS36021.1 1 2559.0 0.0 16.2715 0.1 733.7 0.0 0,-4 1.0 31 12.0 PRINCIPAL:1 ENSMUSG00000035722 Abca7 ENSMUST00000171637 ENSMUSP00000128121 TRANSLATION protein_coding - CCDS83724.1 1 2167.0 17.0 26.29175 0.4 379.6 2.0 -3,-4 0.6671 18 11.34 ALTERNATIVE:2 ENSMUSG00000035722 Abca7 ENSMUST00000043866 ENSMUSP00000043090 TRANSLATION protein_coding - CCDS24004.1 1 2159.0 17.0 26.62175 0.0 379.6 2.0 -3,-4 1.0 18 12.0 PRINCIPAL:2 ENSMUSG00000035722 Abca7 ENSMUST00000132517 ENSMUSP00000115111 TRANSLATION protein_coding - CCDS24004.1 5 2159.0 17.0 26.62175 0.0 379.6 2.0 -3,-4 1.0 18 12.0 PRINCIPAL:2 ENSMUSG00000019984 Med23 ENSMUST00000020159 ENSMUSP00000020159 TRANSLATION protein_coding - - 1 1367.0 0.0 24.6775 16.0 2047.0 0.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000019984 Med23 ENSMUST00000176827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019984 Med23 ENSMUST00000176313 ENSMUSP00000135751 TRANSLATION protein_coding stop - 2 197.0 0.0 4.9975 0.0 210.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000019984 Med23 ENSMUST00000092646 ENSMUSP00000090316 TRANSLATION protein_coding - - 1 1373.0 0.0 24.3475 16.0 2035.1 0.0 -4,-5 0.9483 22 14.626 MINOR ENSMUSG00000019984 Med23 ENSMUST00000177175 - NO_TRANSLATION retained_intron ENSMUSG00000019984 Med23 ENSMUST00000177522 - NO_TRANSLATION retained_intron ENSMUSG00000019984 Med23 ENSMUST00000177232 ENSMUSP00000134866 TRANSLATION nonsense_mediated_decay - - 1 55.0 0.0 1.0775 0.0 23.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019984 Med23 ENSMUST00000176285 ENSMUSP00000135232 TRANSLATION protein_coding start - 5 1010.0 0.0 16.35 0.0 1470.9 0.0 -4,-6 0.0663 12 -2.0 MINOR ENSMUSG00000019984 Med23 ENSMUST00000176502 ENSMUSP00000134836 TRANSLATION protein_coding start/stop - 3 234.0 0.0 5.0 0.0 222.9 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000019984 Med23 ENSMUST00000175786 - NO_TRANSLATION retained_intron ENSMUSG00000059901 Adamts14 ENSMUST00000092486 ENSMUSP00000090143 TRANSLATION protein_coding - CCDS35915.1 1 1206.0 11.0 6.402 0.1 367.9 0.0 1,-3 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000059901 Adamts14 ENSMUST00000120336 ENSMUSP00000112723 TRANSLATION protein_coding - - 5 1209.0 11.0 6.402 0.1 368.2 0.0 1,-3 0.6223 - 14.0 ALTERNATIVE:2 ENSMUSG00000000901 Mmp11 ENSMUST00000000924 ENSMUSP00000000924 TRANSLATION protein_coding - CCDS23937.1 1 492.0 21.0 5.75 0.4 362.5 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000000901 Mmp11 ENSMUST00000133897 - NO_TRANSLATION retained_intron ENSMUSG00000000901 Mmp11 ENSMUST00000219728 ENSMUSP00000151366 TRANSLATION protein_coding stop - 5 37.0 11.0 1.33 0.0 40.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000901 Mmp11 ENSMUST00000132869 ENSMUSP00000120800 TRANSLATION nonsense_mediated_decay start - 3 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0354 - -2.0 MINOR ENSMUSG00000000901 Mmp11 ENSMUST00000120281 ENSMUSP00000112940 TRANSLATION protein_coding - CCDS23937.1 1 492.0 21.0 5.75 0.4 362.5 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000000901 Mmp11 ENSMUST00000152222 ENSMUSP00000116279 TRANSLATION protein_coding start - 5 154.0 1.0 0.88 0.0 75.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004667 Polr2e ENSMUST00000152843 - NO_TRANSLATION retained_intron ENSMUSG00000004667 Polr2e ENSMUST00000143438 - NO_TRANSLATION retained_intron ENSMUSG00000004667 Polr2e ENSMUST00000004786 ENSMUSP00000004786 TRANSLATION protein_coding - CCDS35972.1 1 210.0 0.0 4.75 27.8 242.0 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000004667 Polr2e ENSMUST00000131743 - NO_TRANSLATION retained_intron ENSMUSG00000004667 Polr2e ENSMUST00000147507 - NO_TRANSLATION retained_intron ENSMUSG00000020108 Ddit4 ENSMUST00000020308 ENSMUSP00000020308 TRANSLATION protein_coding - CCDS23868.1 1 229.0 0.0 0.8 13.4 139.0 0.0 -4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000020284 Cfap410 ENSMUST00000130949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020284 Cfap410 ENSMUST00000105397 ENSMUSP00000101036 TRANSLATION protein_coding - CCDS35954.1 1 249.0 0.0 2.98 8.0 0.0 0.0 -4,-1 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000020284 Cfap410 ENSMUST00000136275 - NO_TRANSLATION retained_intron ENSMUSG00000020284 Cfap410 ENSMUST00000116237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020284 Cfap410 ENSMUST00000129277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020284 Cfap410 ENSMUST00000123999 - NO_TRANSLATION retained_intron ENSMUSG00000020284 Cfap410 ENSMUST00000149074 - NO_TRANSLATION retained_intron ENSMUSG00000020284 Cfap410 ENSMUST00000105398 ENSMUSP00000101037 TRANSLATION protein_coding - - 1 212.0 0.0 2.98 0.0 0.0 0.0 -4,-1 0.0506 3 6.0 MINOR ENSMUSG00000040195 Nemp1 ENSMUST00000142580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040195 Nemp1 ENSMUST00000118612 ENSMUSP00000113337 TRANSLATION protein_coding - CCDS48721.1 1 325.0 0.0 0.0 0.0 203.7 6.0 -2,-5 0.0402 1 0.0 MINOR ENSMUSG00000040195 Nemp1 ENSMUST00000124388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040195 Nemp1 ENSMUST00000118728 ENSMUSP00000113473 TRANSLATION protein_coding - - 1 388.0 0.0 0.0 2.8 306.8 6.0 -4,-5 0.5879 3 2.75 ALTERNATIVE:2 ENSMUSG00000040195 Nemp1 ENSMUST00000133505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040195 Nemp1 ENSMUST00000048099 ENSMUSP00000045988 TRANSLATION protein_coding - CCDS48720.1 1 437.0 0.0 0.0 3.4 306.8 6.0 -2,-5 1.0 3 3.0 PRINCIPAL:2 ENSMUSG00000019822 Smpd2 ENSMUST00000143470 - NO_TRANSLATION retained_intron ENSMUSG00000019822 Smpd2 ENSMUST00000141542 - NO_TRANSLATION retained_intron ENSMUSG00000019822 Smpd2 ENSMUST00000147367 - NO_TRANSLATION retained_intron ENSMUSG00000019822 Smpd2 ENSMUST00000122997 - NO_TRANSLATION retained_intron ENSMUSG00000019822 Smpd2 ENSMUST00000126833 - NO_TRANSLATION retained_intron ENSMUSG00000019822 Smpd2 ENSMUST00000019965 ENSMUSP00000019965 TRANSLATION protein_coding - CCDS23805.1 1 419.0 0.0 0.0 7.3 43.3 0.0 -4,-1 1.0 15 8.0 PRINCIPAL:1 ENSMUSG00000019822 Smpd2 ENSMUST00000132170 - NO_TRANSLATION retained_intron ENSMUSG00000019822 Smpd2 ENSMUST00000155411 ENSMUSP00000115461 TRANSLATION nonsense_mediated_decay - - 3 83.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000019822 Smpd2 ENSMUST00000147738 - NO_TRANSLATION retained_intron ENSMUSG00000019913 Sim1 ENSMUST00000020071 ENSMUSP00000020071 TRANSLATION protein_coding - CCDS48556.1 1 765.0 0.0 4.559 24.9 508.7 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000019913 Sim1 ENSMUST00000219436 ENSMUSP00000151816 TRANSLATION protein_coding - - 5 94.0 0.0 1.0 0.0 28.5 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000038583 Pln ENSMUST00000046221 ENSMUSP00000045709 TRANSLATION protein_coding - CCDS35899.1 1 52.0 0.0 1.0 24.9 122.9 1.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038583 Pln ENSMUST00000220197 ENSMUSP00000151966 TRANSLATION protein_coding - CCDS35899.1 5 52.0 0.0 1.0 24.9 122.9 1.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038583 Pln ENSMUST00000219491 ENSMUSP00000151641 TRANSLATION protein_coding - CCDS35899.1 2 52.0 0.0 1.0 24.9 122.9 1.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038583 Pln ENSMUST00000219921 ENSMUSP00000151860 TRANSLATION protein_coding - CCDS35899.1 2 52.0 0.0 1.0 24.9 122.9 1.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038583 Pln ENSMUST00000218468 ENSMUSP00000151745 TRANSLATION protein_coding - CCDS35899.1 5 52.0 0.0 1.0 24.9 122.9 1.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038583 Pln ENSMUST00000163319 ENSMUSP00000132743 TRANSLATION protein_coding - CCDS35899.1 5 52.0 0.0 1.0 24.9 122.9 1.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000019877 Serinc1 ENSMUST00000164400 - NO_TRANSLATION retained_intron ENSMUSG00000019877 Serinc1 ENSMUST00000166997 - NO_TRANSLATION retained_intron ENSMUSG00000019877 Serinc1 ENSMUST00000020027 ENSMUSP00000020027 TRANSLATION protein_coding - CCDS23853.1 1 453.0 0.0 4.63 14.6 580.7 14.0 -2,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000019877 Serinc1 ENSMUST00000170062 ENSMUSP00000127041 TRANSLATION nonsense_mediated_decay - - 5 114.0 0.0 1.3 0.0 98.1 5.0 -2,-5 0.0021 1 -2.0 MINOR ENSMUSG00000019877 Serinc1 ENSMUST00000169122 ENSMUSP00000126561 TRANSLATION protein_coding stop - 3 220.0 0.0 3.53 0.0 242.9 10.0 -2,-5 0.0027 1 -2.0 MINOR ENSMUSG00000061759 Armt1 ENSMUST00000152294 ENSMUSP00000115624 TRANSLATION nonsense_mediated_decay - - 2 53.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000061759 Armt1 ENSMUST00000095893 ENSMUSP00000093581 TRANSLATION protein_coding - CCDS56676.1 1 439.0 3.0 4.0 11.4 416.7 0.0 -4,-5 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000061759 Armt1 ENSMUST00000117489 ENSMUSP00000114025 TRANSLATION protein_coding - - 1 136.0 0.0 2.4 0.0 78.1 0.0 -4,-5 0.0 6 2.802 MINOR ENSMUSG00000061759 Armt1 ENSMUST00000134484 - NO_TRANSLATION retained_intron ENSMUSG00000061759 Armt1 ENSMUST00000131636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061759 Armt1 ENSMUST00000118544 ENSMUSP00000114073 TRANSLATION protein_coding - - 1 208.0 0.0 3.4 0.0 107.9 0.0 -4,-5 0.0 10 4.8 MINOR ENSMUSG00000061759 Armt1 ENSMUST00000143037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040502 Marchf9 ENSMUST00000040307 ENSMUSP00000041581 TRANSLATION protein_coding - CCDS24225.1 1 348.0 8.0 2.6 6.8 42.2 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000019961 Tmpo ENSMUST00000216402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019961 Tmpo ENSMUST00000216501 - NO_TRANSLATION retained_intron ENSMUSG00000019961 Tmpo ENSMUST00000213262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019961 Tmpo ENSMUST00000215126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019961 Tmpo ENSMUST00000020123 ENSMUSP00000020123 TRANSLATION protein_coding - CCDS24122.1 1 693.0 0.0 3.44 7.6 667.7 0.0 -4,-5 1.0 25 14.0 PRINCIPAL:1 ENSMUSG00000019961 Tmpo ENSMUST00000092219 ENSMUSP00000089864 TRANSLATION protein_coding - CCDS36034.1 1 412.0 0.0 2.8 1.1 167.3 1.0 -4,-5 0.033 21 4.752 MINOR ENSMUSG00000019961 Tmpo ENSMUST00000105293 ENSMUSP00000100930 TRANSLATION protein_coding - CCDS36032.1 1 343.0 0.0 2.8 2.6 167.3 1.0 -4,-5 0.1386 15 5.206 MINOR ENSMUSG00000019961 Tmpo ENSMUST00000214391 - NO_TRANSLATION retained_intron ENSMUSG00000019961 Tmpo ENSMUST00000215801 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019961 Tmpo ENSMUST00000072239 ENSMUSP00000072092 TRANSLATION protein_coding - CCDS36035.1 1 452.0 0.0 2.8 2.6 167.3 1.0 -4,-5 0.1347 22 5.206 MINOR ENSMUSG00000019961 Tmpo ENSMUST00000213270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019961 Tmpo ENSMUST00000099355 ENSMUSP00000096956 TRANSLATION protein_coding - CCDS36033.1 1 380.0 0.0 2.8 2.6 167.3 1.0 -4,-5 0.139 16 5.206 MINOR ENSMUSG00000019961 Tmpo ENSMUST00000217449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000112148 Lilrb4a ENSMUST00000217705 ENSMUSP00000151225 TRANSLATION protein_coding - - 1 240.0 0.0 1.6 0.0 32.5 2.0 2,-2 0.0086 1 3.0 MINOR ENSMUSG00000112148 Lilrb4a ENSMUST00000218753 - NO_TRANSLATION retained_intron ENSMUSG00000112148 Lilrb4a ENSMUST00000219175 - NO_TRANSLATION retained_intron ENSMUSG00000112148 Lilrb4a ENSMUST00000218340 - NO_TRANSLATION retained_intron ENSMUSG00000112148 Lilrb4a ENSMUST00000078778 ENSMUSP00000077833 TRANSLATION protein_coding - CCDS23832.1 1 335.0 0.0 3.1 0.1 64.7 2.0 4,-1 0.5934 2 8.0 ALTERNATIVE:2 ENSMUSG00000112148 Lilrb4a ENSMUST00000220402 - NO_TRANSLATION retained_intron ENSMUSG00000112148 Lilrb4a ENSMUST00000218217 - NO_TRANSLATION retained_intron ENSMUSG00000112148 Lilrb4a ENSMUST00000219029 - NO_TRANSLATION retained_intron ENSMUSG00000112148 Lilrb4a ENSMUST00000220226 ENSMUSP00000151303 TRANSLATION protein_coding stop - 5 25.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000112148 Lilrb4a ENSMUST00000219848 - NO_TRANSLATION retained_intron ENSMUSG00000112148 Lilrb4a ENSMUST00000220166 - NO_TRANSLATION retained_intron ENSMUSG00000112148 Lilrb4a ENSMUST00000219388 - NO_TRANSLATION retained_intron ENSMUSG00000112148 Lilrb4a ENSMUST00000218617 ENSMUSP00000151580 TRANSLATION nonsense_mediated_decay - - 1 39.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000112148 Lilrb4a ENSMUST00000220182 ENSMUSP00000151694 TRANSLATION protein_coding - - 1 296.0 0.0 3.1 0.1 64.7 0.0 4,-1 0.8181 2 8.0 PRINCIPAL:4 ENSMUSG00000020092 Pald1 ENSMUST00000020289 ENSMUSP00000020289 TRANSLATION protein_coding - CCDS23877.1 1 859.0 14.0 0.365 7.1 203.1 0.0 -4,-5 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000020092 Pald1 ENSMUST00000219240 - NO_TRANSLATION retained_intron ENSMUSG00000020092 Pald1 ENSMUST00000219132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020186 Csrp2 ENSMUST00000020403 ENSMUSP00000020403 TRANSLATION protein_coding - CCDS24165.1 1 193.0 16.0 5.16 36.9 114.0 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000020186 Csrp2 ENSMUST00000219502 ENSMUSP00000151276 TRANSLATION protein_coding - - 3 114.0 8.0 2.33 0.0 52.2 0.0 -4,-6 0.0 4 3.3 MINOR ENSMUSG00000020186 Csrp2 ENSMUST00000219840 ENSMUSP00000151547 TRANSLATION non_stop_decay stop - 2 59.0 4.0 1.0 0.0 23.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020186 Csrp2 ENSMUST00000220409 ENSMUSP00000151913 TRANSLATION protein_coding - - 2 197.0 15.0 4.41 0.0 107.5 0.0 -4,-6 0.0187 6 15.444 MINOR ENSMUSG00000020186 Csrp2 ENSMUST00000220301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020186 Csrp2 ENSMUST00000220054 ENSMUSP00000151538 TRANSLATION protein_coding stop - 2 136.0 10.0 3.33 0.0 52.2 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000020186 Csrp2 ENSMUST00000219188 ENSMUSP00000151746 TRANSLATION protein_coding stop - 3 84.0 8.0 2.0 0.0 52.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000035595 Fam174c ENSMUST00000041882 ENSMUSP00000037758 TRANSLATION protein_coding - CCDS24012.1 1 108.0 0.0 0.0 0.0 36.7 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000112640 Gm32687 ENSMUST00000220314 ENSMUSP00000151266 TRANSLATION protein_coding - - 1 600.0 68.0 1.15 0.0 358.2 0.0 -4,-5 0.8373 - 18.0 PRINCIPAL:1 ENSMUSG00000019815 Zc2hc1b ENSMUST00000219970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019815 Zc2hc1b ENSMUST00000019954 ENSMUSP00000019954 TRANSLATION protein_coding - CCDS48502.1 1 172.0 8.0 2.048 0.1 51.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000069662 Marcks ENSMUST00000092584 ENSMUSP00000090245 TRANSLATION protein_coding - CCDS23784.1 1 309.0 0.0 0.0 0.0 289.5 0.0 -4,-6 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000094012 Gm10024 ENSMUST00000075421 ENSMUSP00000074876 TRANSLATION protein_coding - CCDS48605.1 - 119.0 0.0 0.0 3.0 27.0 0.0 -4,-6 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000062866 Phactr2 ENSMUST00000154265 - NO_TRANSLATION retained_intron ENSMUSG00000062866 Phactr2 ENSMUST00000105546 ENSMUSP00000101185 TRANSLATION protein_coding - - 5 632.0 0.0 4.75 7.1 105.3 0.0 -4,-5 0.94 6 10.0 ALTERNATIVE:1 ENSMUSG00000062866 Phactr2 ENSMUST00000079698 ENSMUSP00000078637 TRANSLATION protein_coding - - 5 556.0 0.0 4.75 2.7 105.3 0.0 -4,-5 0.3478 6 8.558 MINOR ENSMUSG00000062866 Phactr2 ENSMUST00000105545 ENSMUSP00000101184 TRANSLATION protein_coding - - 1 626.0 0.0 4.75 0.1 105.3 0.0 -4,-5 0.1642 7 8.0 MINOR ENSMUSG00000062866 Phactr2 ENSMUST00000105543 ENSMUSP00000101182 TRANSLATION protein_coding - CCDS35846.1 1 563.0 0.0 4.75 6.6 105.3 0.0 -4,-5 1.0 6 9.836 PRINCIPAL:4 ENSMUSG00000112129 Pbld1 ENSMUST00000219204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000112129 Pbld1 ENSMUST00000218401 - NO_TRANSLATION retained_intron ENSMUSG00000112129 Pbld1 ENSMUST00000219687 ENSMUSP00000151373 TRANSLATION protein_coding - - 1 69.0 0.0 0.75 0.0 0.0 0.0 -4,0 0.0113 - 0.0 MINOR ENSMUSG00000112129 Pbld1 ENSMUST00000219045 ENSMUSP00000151357 TRANSLATION protein_coding - - 1 37.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0083 - 0.0 MINOR ENSMUSG00000112129 Pbld1 ENSMUST00000219829 ENSMUSP00000151721 TRANSLATION protein_coding start - 3 132.0 0.0 2.88 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000112129 Pbld1 ENSMUST00000178684 ENSMUSP00000136589 TRANSLATION protein_coding - CCDS23895.1 1 288.0 0.0 7.88 26.5 0.0 0.0 -4,-7 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000112129 Pbld1 ENSMUST00000020266 ENSMUSP00000020266 TRANSLATION protein_coding - - 5 289.0 0.0 7.88 26.5 0.0 0.0 -4,-6 0.8553 6 10.0 ALTERNATIVE:1 ENSMUSG00000020114 Cand1 ENSMUST00000149155 - NO_TRANSLATION retained_intron ENSMUSG00000020114 Cand1 ENSMUST00000148802 - NO_TRANSLATION retained_intron ENSMUSG00000020114 Cand1 ENSMUST00000020315 ENSMUSP00000020315 TRANSLATION protein_coding - CCDS48701.1 1 1230.0 0.0 11.58 34.2 218.9 0.0 -4,-5 1.0 43 16.0 PRINCIPAL:1 ENSMUSG00000020114 Cand1 ENSMUST00000126373 ENSMUSP00000115234 TRANSLATION protein_coding stop - 3 247.0 0.0 3.5 0.0 0.0 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000033255 Gm5134 ENSMUST00000099577 ENSMUSP00000097172 TRANSLATION protein_coding - CCDS35940.2 1 671.0 0.0 10.1 0.0 390.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033255 Gm5134 ENSMUST00000134234 - NO_TRANSLATION retained_intron ENSMUSG00000020183 Cpm ENSMUST00000020399 ENSMUSP00000020399 TRANSLATION protein_coding - CCDS48696.1 1 443.0 8.0 7.264 6.1 295.8 0.0 2,-3 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000020183 Cpm ENSMUST00000138020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020183 Cpm ENSMUST00000123374 - NO_TRANSLATION retained_intron ENSMUSG00000020183 Cpm ENSMUST00000141991 - NO_TRANSLATION retained_intron ENSMUSG00000113640 Adat3 ENSMUST00000038411 ENSMUSP00000040551 TRANSLATION protein_coding - CCDS48637.1 2 349.0 4.0 0.466 5.3 54.5 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000113640 Adat3 ENSMUST00000221960 ENSMUSP00000152275 TRANSLATION protein_coding stop - 3 183.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000113640 Adat3 ENSMUST00000221670 ENSMUSP00000152839 TRANSLATION protein_coding stop - 2 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020263 Appl2 ENSMUST00000176294 ENSMUSP00000135645 TRANSLATION protein_coding stop - 3 95.0 0.0 3.0 0.0 42.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020263 Appl2 ENSMUST00000147582 - NO_TRANSLATION retained_intron ENSMUSG00000020263 Appl2 ENSMUST00000150685 ENSMUSP00000115903 TRANSLATION nonsense_mediated_decay - - 3 117.0 0.0 3.0 0.0 84.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020263 Appl2 ENSMUST00000141048 - NO_TRANSLATION retained_intron ENSMUSG00000020263 Appl2 ENSMUST00000020500 ENSMUSP00000020500 TRANSLATION protein_coding - CCDS24078.1 1 662.0 0.0 12.56 13.8 281.3 0.0 -4,-5 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000020263 Appl2 ENSMUST00000147118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020263 Appl2 ENSMUST00000150351 - NO_TRANSLATION retained_intron ENSMUSG00000020263 Appl2 ENSMUST00000177187 ENSMUSP00000135157 TRANSLATION protein_coding start - 5 67.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020263 Appl2 ENSMUST00000130285 - NO_TRANSLATION retained_intron ENSMUSG00000020263 Appl2 ENSMUST00000146876 ENSMUSP00000121336 TRANSLATION protein_coding stop - 5 209.0 0.0 6.08 0.0 195.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000020263 Appl2 ENSMUST00000127788 - NO_TRANSLATION retained_intron ENSMUSG00000020263 Appl2 ENSMUST00000133719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020263 Appl2 ENSMUST00000148096 - NO_TRANSLATION retained_intron ENSMUSG00000020263 Appl2 ENSMUST00000176675 ENSMUSP00000135672 TRANSLATION nonsense_mediated_decay start - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049052 Or6c216 ENSMUST00000203571 ENSMUSP00000145284 TRANSLATION protein_coding - CCDS24339.1 3 310.0 0.0 1.0 6.8 170.0 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049052 Or6c216 ENSMUST00000205013 ENSMUSP00000145482 TRANSLATION protein_coding - CCDS24339.1 5 310.0 0.0 1.0 6.8 170.0 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049052 Or6c216 ENSMUST00000057775 ENSMUSP00000053359 TRANSLATION protein_coding - CCDS24339.1 - 310.0 0.0 1.0 6.8 170.0 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040043 Rbms2 ENSMUST00000218884 - NO_TRANSLATION retained_intron ENSMUSG00000040043 Rbms2 ENSMUST00000099139 ENSMUSP00000096742 TRANSLATION protein_coding - CCDS24262.1 1 355.0 0.0 4.9 0.0 106.4 0.0 -4,-5 0.1393 5 11.868 MINOR ENSMUSG00000040043 Rbms2 ENSMUST00000217750 - NO_TRANSLATION retained_intron ENSMUSG00000040043 Rbms2 ENSMUST00000092033 ENSMUSP00000089664 TRANSLATION protein_coding - CCDS24261.1 1 383.0 0.0 4.966 1.8 106.4 0.0 -4,-7 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000040043 Rbms2 ENSMUST00000217722 - NO_TRANSLATION retained_intron ENSMUSG00000040043 Rbms2 ENSMUST00000238843 ENSMUSP00000159167 TRANSLATION protein_coding - - - 381.0 0.0 4.9 0.4 106.4 0.0 -4,-5 0.2385 5 11.868 MINOR ENSMUSG00000032834 Pwp2 ENSMUST00000042556 ENSMUSP00000045812 TRANSLATION protein_coding - CCDS35958.1 1 919.0 0.0 12.5 3.0 163.5 0.0 -4,-2 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000039116 Adgrg6 ENSMUST00000208905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039116 Adgrg6 ENSMUST00000207953 - NO_TRANSLATION retained_intron ENSMUSG00000039116 Adgrg6 ENSMUST00000208429 ENSMUSP00000146821 TRANSLATION protein_coding - - 5 1193.0 4.0 7.088 6.4 291.8 7.0 -2,-5 0.8278 5 12.552 MINOR ENSMUSG00000039116 Adgrg6 ENSMUST00000238680 ENSMUSP00000158717 TRANSLATION protein_coding - - - 1220.0 4.0 7.838 8.9 291.8 7.0 -2,-5 0.9777 5 15.0 ALTERNATIVE:1 ENSMUSG00000039116 Adgrg6 ENSMUST00000041168 ENSMUSP00000043055 TRANSLATION protein_coding - CCDS35848.1 1 1165.0 4.0 7.838 6.8 291.8 7.0 -2,-5 1.0 5 14.202 PRINCIPAL:4 ENSMUSG00000006731 B4galnt1 ENSMUST00000006914 ENSMUSP00000006914 TRANSLATION protein_coding - CCDS24230.1 1 533.0 12.0 4.735 11.0 62.5 0.0 0,-4 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000006731 B4galnt1 ENSMUST00000220055 - NO_TRANSLATION retained_intron ENSMUSG00000006731 B4galnt1 ENSMUST00000219523 - NO_TRANSLATION retained_intron ENSMUSG00000006731 B4galnt1 ENSMUST00000217678 ENSMUSP00000151229 TRANSLATION nonsense_mediated_decay - - 1 192.0 0.0 1.1 0.0 0.0 0.0 0,-4 0.0 5 -2.0 MINOR ENSMUSG00000006731 B4galnt1 ENSMUST00000218977 - NO_TRANSLATION retained_intron ENSMUSG00000019852 Arfgef3 ENSMUST00000215836 ENSMUSP00000149210 TRANSLATION protein_coding - CCDS23712.1 1 2170.0 0.0 1.165 5.8 88.9 0.0 -4,-5 1.0 40 14.0 PRINCIPAL:1 ENSMUSG00000019852 Arfgef3 ENSMUST00000019999 ENSMUSP00000019999 TRANSLATION protein_coding - - 1 1709.0 0.0 1.165 0.0 88.9 0.0 -4,-5 0.2549 33 12.0 MINOR ENSMUSG00000019785 Clvs2 ENSMUST00000161692 ENSMUSP00000151805 TRANSLATION protein_coding - - 1 245.0 0.0 2.0 0.0 66.9 0.0 -4,-5 0.0003 5 3.336 MINOR ENSMUSG00000019785 Clvs2 ENSMUST00000019920 ENSMUSP00000019920 TRANSLATION protein_coding - CCDS23770.1 1 327.0 0.0 4.0 35.4 144.6 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000019785 Clvs2 ENSMUST00000160299 ENSMUSP00000125100 TRANSLATION protein_coding - - 1 227.0 0.0 2.2 0.0 67.1 0.0 -4,-5 0.0 5 3.75 MINOR ENSMUSG00000019785 Clvs2 ENSMUST00000159533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020323 Prss57 ENSMUST00000020573 ENSMUSP00000020573 TRANSLATION protein_coding - CCDS35968.1 1 284.0 2.0 6.66 0.0 203.5 0.0 1,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020323 Prss57 ENSMUST00000167987 ENSMUSP00000130448 TRANSLATION protein_coding start - 1 93.0 0.0 2.1 0.0 34.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020323 Prss57 ENSMUST00000169684 ENSMUSP00000132215 TRANSLATION protein_coding - CCDS35968.1 1 284.0 2.0 6.66 0.0 203.5 0.0 1,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020323 Prss57 ENSMUST00000171681 ENSMUSP00000131642 TRANSLATION protein_coding start - 3 107.0 0.0 3.33 0.0 39.6 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000034917 Tjp3 ENSMUST00000219958 - NO_TRANSLATION retained_intron ENSMUSG00000034917 Tjp3 ENSMUST00000219479 ENSMUSP00000151601 TRANSLATION protein_coding - CCDS24051.1 1 904.0 0.0 9.9 0.1 239.4 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000034917 Tjp3 ENSMUST00000045744 ENSMUSP00000036438 TRANSLATION protein_coding - CCDS24051.1 1 904.0 0.0 9.9 0.1 239.4 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000034917 Tjp3 ENSMUST00000218966 - NO_TRANSLATION retained_intron ENSMUSG00000034917 Tjp3 ENSMUST00000218520 - NO_TRANSLATION retained_intron ENSMUSG00000034917 Tjp3 ENSMUST00000218484 ENSMUSP00000151819 TRANSLATION protein_coding stop - 2 169.0 0.0 1.78 0.0 58.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000071195 Gm10318 ENSMUST00000186874 ENSMUSP00000151495 TRANSLATION protein_coding - - - 225.0 0.0 0.0 0.0 62.5 0.0 -4,-5 0.7218 - 6.0 PRINCIPAL:1 ENSMUSG00000020074 Ccar1 ENSMUST00000218946 ENSMUSP00000151764 TRANSLATION protein_coding stop - 3 161.0 0.0 0.0 0.0 26.7 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000020074 Ccar1 ENSMUST00000218786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020074 Ccar1 ENSMUST00000218437 - NO_TRANSLATION retained_intron ENSMUSG00000020074 Ccar1 ENSMUST00000218945 - NO_TRANSLATION retained_intron ENSMUSG00000020074 Ccar1 ENSMUST00000219441 - NO_TRANSLATION retained_intron ENSMUSG00000020074 Ccar1 ENSMUST00000220236 - NO_TRANSLATION retained_intron ENSMUSG00000020074 Ccar1 ENSMUST00000219527 ENSMUSP00000151895 TRANSLATION protein_coding - CCDS35922.1 1 1146.0 0.0 0.0 17.1 318.0 0.0 -4,-7 1.0 21 10.0 PRINCIPAL:1 ENSMUSG00000020074 Ccar1 ENSMUST00000218229 ENSMUSP00000151406 TRANSLATION nonsense_mediated_decay - - 5 92.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000020074 Ccar1 ENSMUST00000217940 - NO_TRANSLATION retained_intron ENSMUSG00000020074 Ccar1 ENSMUST00000217768 ENSMUSP00000151496 TRANSLATION protein_coding stop - 3 198.0 0.0 0.0 0.0 106.3 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000020074 Ccar1 ENSMUST00000020268 ENSMUSP00000020268 TRANSLATION protein_coding - CCDS35922.1 1 1146.0 0.0 0.0 17.1 318.0 0.0 -4,-7 1.0 21 10.0 PRINCIPAL:1 ENSMUSG00000020074 Ccar1 ENSMUST00000218552 - NO_TRANSLATION retained_intron ENSMUSG00000059602 Syn3 ENSMUST00000143319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059602 Syn3 ENSMUST00000120638 ENSMUSP00000113720 TRANSLATION protein_coding - CCDS24096.1 1 579.0 22.0 8.0 15.3 674.8 0.0 -4,-1 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000059602 Syn3 ENSMUST00000145864 - NO_TRANSLATION retained_intron ENSMUSG00000059602 Syn3 ENSMUST00000121789 ENSMUSP00000113408 TRANSLATION protein_coding - CCDS48659.1 1 243.0 1.0 3.665 0.0 304.0 0.0 -4,-1 0.0059 5 0.0 MINOR ENSMUSG00000059602 Syn3 ENSMUST00000139197 - NO_TRANSLATION retained_intron ENSMUSG00000059602 Syn3 ENSMUST00000123783 - NO_TRANSLATION retained_intron ENSMUSG00000034127 Tspan8 ENSMUST00000035563 ENSMUSP00000049243 TRANSLATION protein_coding - CCDS24181.1 1 235.0 0.0 4.03 11.2 169.8 4.0 -1,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000034127 Tspan8 ENSMUST00000179196 ENSMUSP00000136645 TRANSLATION protein_coding - CCDS24181.1 1 235.0 0.0 4.03 11.2 169.8 4.0 -1,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000034127 Tspan8 ENSMUST00000217900 ENSMUSP00000151525 TRANSLATION protein_coding stop - 2 83.0 0.0 2.23 0.0 74.2 2.0 -1,-5 0.0015 - -2.0 MINOR ENSMUSG00000034127 Tspan8 ENSMUST00000080630 ENSMUSP00000079463 TRANSLATION protein_coding - CCDS24181.1 1 235.0 0.0 4.03 11.2 169.8 4.0 -1,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000046493 Or7a36 ENSMUST00000058991 ENSMUSP00000054355 TRANSLATION protein_coding - CCDS23973.1 2 309.0 0.0 2.8 9.8 175.6 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046493 Or7a36 ENSMUST00000203973 ENSMUSP00000144895 TRANSLATION protein_coding stop - 2 122.0 0.0 1.0 0.0 88.4 2.0 -1,-5 0.0015 - -2.0 MINOR ENSMUSG00000020021 Fgd6 ENSMUST00000020208 ENSMUSP00000020208 TRANSLATION protein_coding - CCDS48674.1 1 1399.0 3.0 10.909 0.0 274.5 0.0 -4,-6 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000020021 Fgd6 ENSMUST00000141143 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020021 Fgd6 ENSMUST00000125535 - NO_TRANSLATION retained_intron ENSMUSG00000112931 Gm4303 ENSMUST00000218922 ENSMUSP00000151319 TRANSLATION protein_coding - - - 286.0 0.0 0.8 0.0 69.7 0.0 -4,-5 0.7789 - 12.0 PRINCIPAL:1 ENSMUSG00000019772 Vip ENSMUST00000019906 ENSMUSP00000019906 TRANSLATION protein_coding - CCDS56682.1 1 171.0 0.0 1.0 10.0 100.0 0.0 4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000019772 Vip ENSMUST00000217331 - NO_TRANSLATION retained_intron ENSMUSG00000075000 Nrbf2 ENSMUST00000077839 ENSMUSP00000097254 TRANSLATION protein_coding - CCDS23902.1 1 287.0 0.0 1.74 12.5 486.0 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000075000 Nrbf2 ENSMUST00000159002 ENSMUSP00000125678 TRANSLATION protein_coding - - 3 60.0 0.0 1.08 0.0 74.9 0.0 -4,-6 0.0 1 3.726 MINOR ENSMUSG00000019787 Trdn ENSMUST00000095762 ENSMUSP00000093436 TRANSLATION protein_coding - CCDS48532.1 5 693.0 0.0 0.0 0.0 30.4 1.0 -4,-5 0.3598 6 0.0 ALTERNATIVE:2 ENSMUSG00000019787 Trdn ENSMUST00000219931 ENSMUSP00000151999 TRANSLATION protein_coding - - 1 305.0 0.0 0.0 0.0 30.4 1.0 -4,-5 0.7186 1 0.0 PRINCIPAL:2 ENSMUSG00000019787 Trdn ENSMUST00000217779 ENSMUSP00000151583 TRANSLATION protein_coding - - 1 293.0 0.0 0.0 0.7 30.4 1.0 -4,-5 0.1175 3 0.0 ALTERNATIVE:2 ENSMUSG00000019787 Trdn ENSMUST00000219000 - NO_TRANSLATION retained_intron ENSMUSG00000019787 Trdn ENSMUST00000219665 ENSMUSP00000152047 TRANSLATION protein_coding stop - 1 286.0 0.0 0.0 0.0 30.4 1.0 -4,-5 0.0774 1 -2.0 MINOR ENSMUSG00000019787 Trdn ENSMUST00000219211 ENSMUSP00000151565 TRANSLATION protein_coding start/stop - 5 205.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0018 2 -2.0 MINOR ENSMUSG00000019787 Trdn ENSMUST00000219982 ENSMUSP00000152042 TRANSLATION protein_coding - - 1 277.0 0.0 0.0 0.0 30.4 1.0 -4,-5 0.0737 1 0.0 ALTERNATIVE:2 ENSMUSG00000019787 Trdn ENSMUST00000218281 ENSMUSP00000151235 TRANSLATION protein_coding stop - 5 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000044199 S1pr4 ENSMUST00000053646 ENSMUSP00000050412 TRANSLATION protein_coding - CCDS24059.1 - 386.0 0.0 0.4 1.1 106.4 0.0 -4,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000005683 Cs ENSMUST00000218159 - NO_TRANSLATION retained_intron ENSMUSG00000005683 Cs ENSMUST00000005826 ENSMUSP00000005826 TRANSLATION protein_coding - CCDS24273.1 1 464.0 23.0 8.95 20.0 0.0 0.0 -1,2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000062931 Zfp938 ENSMUST00000041264 ENSMUSP00000047110 TRANSLATION protein_coding - CCDS48652.1 1 579.0 43.0 2.1 0.1 252.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000062931 Zfp938 ENSMUST00000156218 ENSMUSP00000121613 TRANSLATION nonsense_mediated_decay - - 1 64.0 0.0 1.75 0.4 83.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043259 Fam13c ENSMUST00000218542 - NO_TRANSLATION retained_intron ENSMUSG00000043259 Fam13c ENSMUST00000062883 ENSMUSP00000051375 TRANSLATION protein_coding - CCDS35932.1 1 601.0 0.0 0.0 4.9 0.0 0.0 -4,-5 1.0 10 2.0 PRINCIPAL:4 ENSMUSG00000043259 Fam13c ENSMUST00000105436 ENSMUSP00000101076 TRANSLATION protein_coding - CCDS48592.1 5 519.0 0.0 0.0 2.9 0.0 0.0 -4,-7 0.479 10 0.974 ALTERNATIVE:2 ENSMUSG00000043259 Fam13c ENSMUST00000220159 - NO_TRANSLATION retained_intron ENSMUSG00000043259 Fam13c ENSMUST00000173042 ENSMUSP00000134648 TRANSLATION protein_coding - CCDS56709.1 1 600.0 0.0 0.0 4.9 0.0 0.0 -4,-5 0.9937 10 2.0 ALTERNATIVE:1 ENSMUSG00000043259 Fam13c ENSMUST00000220442 - NO_TRANSLATION retained_intron ENSMUSG00000043259 Fam13c ENSMUST00000219514 - NO_TRANSLATION retained_intron ENSMUSG00000094311 Rfpl4b ENSMUST00000179279 ENSMUSP00000137446 TRANSLATION protein_coding - CCDS56699.1 5 266.0 8.0 0.32 0.0 32.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000019820 Utrn ENSMUST00000219584 ENSMUSP00000152040 TRANSLATION protein_coding stop - 1 730.0 0.0 9.35 0.0 256.2 0.0 -4,-5 0.0041 21 -2.0 MINOR ENSMUSG00000019820 Utrn ENSMUST00000218635 ENSMUSP00000151431 TRANSLATION protein_coding - CCDS35841.1 5 3430.0 0.0 18.925 6.6 765.6 0.0 -4,-5 1.0 106 13.527 PRINCIPAL:1 ENSMUSG00000019820 Utrn ENSMUST00000217994 ENSMUSP00000151592 TRANSLATION protein_coding - - 1 987.0 0.0 9.575 11.2 403.7 0.0 -4,0 0.6036 23 2.781 MINOR ENSMUSG00000019820 Utrn ENSMUST00000219724 - NO_TRANSLATION retained_intron ENSMUSG00000019820 Utrn ENSMUST00000217899 ENSMUSP00000151938 TRANSLATION protein_coding stop - 1 732.0 0.0 8.9 0.0 256.2 0.0 -4,-2 0.0021 21 -2.0 MINOR ENSMUSG00000019820 Utrn ENSMUST00000217938 - NO_TRANSLATION retained_intron ENSMUSG00000019820 Utrn ENSMUST00000219163 ENSMUSP00000151259 TRANSLATION nonsense_mediated_decay - - 3 62.0 0.0 0.75 0.0 0.0 0.0 -4,-2 0.0006 1 -2.0 MINOR ENSMUSG00000019820 Utrn ENSMUST00000219130 ENSMUSP00000151274 TRANSLATION protein_coding stop - 3 186.0 0.0 4.8 0.0 103.2 0.0 -4,-5 0.0004 6 -2.0 MINOR ENSMUSG00000019820 Utrn ENSMUST00000219003 ENSMUSP00000151628 TRANSLATION protein_coding - - 5 956.0 0.0 9.575 12.0 403.0 0.0 -4,-5 0.6227 23 3.0 MINOR ENSMUSG00000019820 Utrn ENSMUST00000219135 - NO_TRANSLATION retained_intron ENSMUSG00000019820 Utrn ENSMUST00000219660 ENSMUSP00000151359 TRANSLATION protein_coding stop - 1 730.0 0.0 9.35 0.0 256.2 0.0 -4,-5 0.0041 21 -2.0 MINOR ENSMUSG00000019820 Utrn ENSMUST00000219145 - NO_TRANSLATION retained_intron ENSMUSG00000019820 Utrn ENSMUST00000076817 ENSMUSP00000076093 TRANSLATION protein_coding - CCDS35841.1 1 3430.0 0.0 18.925 6.6 765.6 0.0 -4,-5 1.0 106 13.527 PRINCIPAL:1 ENSMUSG00000035864 Syt1 ENSMUST00000126278 - NO_TRANSLATION retained_intron ENSMUSG00000035864 Syt1 ENSMUST00000146618 - NO_TRANSLATION retained_intron ENSMUSG00000035864 Syt1 ENSMUST00000156979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035864 Syt1 ENSMUST00000105276 ENSMUSP00000100912 TRANSLATION protein_coding - CCDS24163.1 1 421.0 22.0 5.8 27.2 184.6 1.0 -4,-6 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000035864 Syt1 ENSMUST00000147593 - NO_TRANSLATION retained_intron ENSMUSG00000035864 Syt1 ENSMUST00000064054 ENSMUSP00000063293 TRANSLATION protein_coding - CCDS24163.1 1 421.0 22.0 5.8 27.2 184.6 1.0 -4,-6 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000053825 Ppfia2 ENSMUST00000029404 ENSMUSP00000029404 TRANSLATION protein_coding - - 1 1256.0 0.0 10.27 8.7 108.2 0.0 -4,-5 0.8356 22 11.0 ALTERNATIVE:1 ENSMUSG00000053825 Ppfia2 ENSMUST00000219024 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053825 Ppfia2 ENSMUST00000217854 ENSMUSP00000151545 TRANSLATION protein_coding - CCDS56746.1 1 1257.0 0.0 10.27 8.7 108.2 0.0 -4,-5 1.0 23 11.0 PRINCIPAL:3 ENSMUSG00000053825 Ppfia2 ENSMUST00000169303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009093 Gstt4 ENSMUST00000159241 ENSMUSP00000124989 TRANSLATION nonsense_mediated_decay - - 1 49.0 3.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000009093 Gstt4 ENSMUST00000160211 ENSMUSP00000125604 TRANSLATION protein_coding - CCDS23933.1 1 240.0 11.0 4.75 12.3 71.4 0.0 -4,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000052681 Rap1b ENSMUST00000064667 ENSMUSP00000066238 TRANSLATION protein_coding - CCDS24196.1 1 184.0 26.0 5.0 36.9 193.0 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000052681 Rap1b ENSMUST00000220214 ENSMUSP00000151578 TRANSLATION nonsense_mediated_decay start - 3 53.0 5.0 1.5 0.0 26.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000039166 Akap7 ENSMUST00000177124 ENSMUSP00000135137 TRANSLATION protein_coding stop - 2 126.0 0.0 0.6 0.0 0.0 0.0 -2,2 0.0006 - -2.0 MINOR ENSMUSG00000039166 Akap7 ENSMUST00000175979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039166 Akap7 ENSMUST00000176258 ENSMUSP00000135037 TRANSLATION protein_coding stop - 3 141.0 1.0 2.93 0.0 76.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000039166 Akap7 ENSMUST00000176231 ENSMUSP00000135433 TRANSLATION protein_coding stop - 5 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039166 Akap7 ENSMUST00000095779 ENSMUSP00000093455 TRANSLATION protein_coding - - 1 122.0 0.0 0.93 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000039166 Akap7 ENSMUST00000220347 ENSMUSP00000151597 TRANSLATION protein_coding start - 2 95.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039166 Akap7 ENSMUST00000100012 ENSMUSP00000097590 TRANSLATION protein_coding - CCDS83688.1 1 81.0 0.0 0.8 10.2 114.0 0.0 -4,-5 1.0 2 3.0 MINOR ENSMUSG00000039166 Akap7 ENSMUST00000041984 ENSMUSP00000043624 TRANSLATION protein_coding - CCDS23753.1 1 314.0 6.0 6.98 0.0 273.5 0.0 -4,-5 0.858 8 18.0 PRINCIPAL:1 ENSMUSG00000037424 Taar9 ENSMUST00000041180 ENSMUSP00000043552 TRANSLATION protein_coding - CCDS23748.1 - 348.0 0.0 1.0 10.3 198.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071324 Armc2 ENSMUST00000095729 ENSMUSP00000093397 TRANSLATION protein_coding - - 5 854.0 0.0 0.0 0.8 20.3 0.0 -4,-6 0.7554 2 6.0 PRINCIPAL:1 ENSMUSG00000071324 Armc2 ENSMUST00000162405 ENSMUSP00000125583 TRANSLATION protein_coding - - 1 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000071324 Armc2 ENSMUST00000161927 ENSMUSP00000124049 TRANSLATION nonsense_mediated_decay - - 5 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000071324 Armc2 ENSMUST00000160367 - NO_TRANSLATION retained_intron ENSMUSG00000071324 Armc2 ENSMUST00000105503 - NO_TRANSLATION retained_intron ENSMUSG00000071324 Armc2 ENSMUST00000160262 ENSMUSP00000125412 TRANSLATION protein_coding - - 5 854.0 0.0 0.0 0.8 20.3 0.0 -4,-6 0.7554 2 6.0 PRINCIPAL:1 ENSMUSG00000071324 Armc2 ENSMUST00000161167 ENSMUSP00000125635 TRANSLATION protein_coding start - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000071324 Armc2 ENSMUST00000161081 ENSMUSP00000125719 TRANSLATION protein_coding stop - 3 147.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000035365 Parpbp ENSMUST00000048518 ENSMUSP00000038375 TRANSLATION protein_coding - CCDS36022.1 1 573.0 0.0 1.114 0.0 0.0 0.0 -4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000035365 Parpbp ENSMUST00000164121 ENSMUSP00000130777 TRANSLATION protein_coding stop - 3 202.0 0.0 0.6 0.0 0.0 0.0 -4,-1 0.0353 - -2.0 MINOR ENSMUSG00000035365 Parpbp ENSMUST00000168163 ENSMUSP00000128492 TRANSLATION protein_coding stop - 3 195.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0428 - -2.0 MINOR ENSMUSG00000035365 Parpbp ENSMUST00000164803 ENSMUSP00000128043 TRANSLATION protein_coding stop - 3 144.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0382 - -2.0 MINOR ENSMUSG00000020216 Jsrp1 ENSMUST00000180438 ENSMUSP00000137701 TRANSLATION protein_coding stop - 5 78.0 0.0 0.0 0.0 56.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020216 Jsrp1 ENSMUST00000020435 ENSMUSP00000020435 TRANSLATION protein_coding - - 2 292.0 0.0 0.0 0.0 90.6 0.0 -2,-5 0.0656 5 2.0 ALTERNATIVE:2 ENSMUSG00000020216 Jsrp1 ENSMUST00000181039 ENSMUSP00000137666 TRANSLATION protein_coding - CCDS24034.2 1 332.0 0.0 0.0 0.0 90.6 0.0 -4,-5 1.0 8 2.0 PRINCIPAL:2 ENSMUSG00000020216 Jsrp1 ENSMUST00000181945 ENSMUSP00000137960 TRANSLATION nonsense_mediated_decay - - 1 93.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019942 Cdk1 ENSMUST00000152448 ENSMUSP00000119085 TRANSLATION protein_coding stop - 3 200.0 18.0 4.5 0.0 214.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000019942 Cdk1 ENSMUST00000119827 ENSMUSP00000113184 TRANSLATION protein_coding - CCDS23908.1 5 297.0 18.0 7.0 18.0 259.5 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000019942 Cdk1 ENSMUST00000149474 - NO_TRANSLATION retained_intron ENSMUSG00000019942 Cdk1 ENSMUST00000129444 - NO_TRANSLATION retained_intron ENSMUSG00000019942 Cdk1 ENSMUST00000123458 - NO_TRANSLATION retained_intron ENSMUSG00000019942 Cdk1 ENSMUST00000020099 ENSMUSP00000020099 TRANSLATION protein_coding - CCDS23908.1 1 297.0 18.0 7.0 18.0 259.5 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000019942 Cdk1 ENSMUST00000124054 - NO_TRANSLATION retained_intron ENSMUSG00000020087 Tysnd1 ENSMUST00000219768 ENSMUSP00000151532 TRANSLATION protein_coding start/stop - 5 102.0 1.0 0.2382 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000020087 Tysnd1 ENSMUST00000020284 ENSMUSP00000020284 TRANSLATION protein_coding - CCDS48575.1 1 568.0 2.0 1.8582 8.0 73.6 0.0 -4,-2 1.0 7 17.0 PRINCIPAL:1 ENSMUSG00000020087 Tysnd1 ENSMUST00000218135 ENSMUSP00000151548 TRANSLATION protein_coding start/stop - 3 198.0 2.0 0.5582 0.0 30.2 0.0 -1,-3 0.0 2 -2.0 MINOR ENSMUSG00000020087 Tysnd1 ENSMUST00000218280 ENSMUSP00000151511 TRANSLATION protein_coding start - 3 142.0 1.0 0.3332 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035863 Palm ENSMUST00000218924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035863 Palm ENSMUST00000220365 ENSMUSP00000151929 TRANSLATION protein_coding stop - 2 205.0 0.0 0.0 0.0 299.5 0.0 -4,-5 0.0008 9 -2.0 MINOR ENSMUSG00000035863 Palm ENSMUST00000218631 ENSMUSP00000152010 TRANSLATION protein_coding - - 2 176.0 0.0 0.0 0.0 67.7 0.0 -4,-5 0.0 6 0.0 MINOR ENSMUSG00000035863 Palm ENSMUST00000105379 ENSMUSP00000101018 TRANSLATION protein_coding - CCDS48621.1 1 339.0 0.0 0.0 4.0 235.5 0.0 -4,-5 0.3916 12 1.818 MINOR ENSMUSG00000035863 Palm ENSMUST00000219711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035863 Palm ENSMUST00000046945 ENSMUSP00000040596 TRANSLATION protein_coding - CCDS23991.1 1 383.0 0.0 0.0 4.3 410.9 0.0 -4,-5 1.0 16 8.0 PRINCIPAL:1 ENSMUSG00000035863 Palm ENSMUST00000218857 ENSMUSP00000151964 TRANSLATION protein_coding stop - 2 151.0 0.0 0.0 0.0 197.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000035863 Palm ENSMUST00000217759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020312 Shc2 ENSMUST00000168116 - NO_TRANSLATION retained_intron ENSMUSG00000020312 Shc2 ENSMUST00000020564 ENSMUSP00000020564 TRANSLATION protein_coding - CCDS48620.1 5 573.0 0.0 6.15 0.4 215.9 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000020312 Shc2 ENSMUST00000166450 - NO_TRANSLATION retained_intron ENSMUSG00000069581 Tspear ENSMUST00000092368 - NO_TRANSLATION retained_intron ENSMUSG00000069581 Tspear ENSMUST00000092366 ENSMUSP00000090020 TRANSLATION protein_coding - CCDS83718.1 1 670.0 0.0 2.4 13.1 281.0 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000069581 Tspear ENSMUST00000125241 - NO_TRANSLATION retained_intron ENSMUSG00000090461 Il22b ENSMUST00000179123 - NO_TRANSLATION retained_intron ENSMUSG00000090461 Il22b ENSMUST00000163808 ENSMUSP00000128415 TRANSLATION protein_coding - CCDS48700.1 1 179.0 0.0 3.85 7.2 237.1 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060301 2610008E11Rik ENSMUST00000039271 ENSMUSP00000044020 TRANSLATION protein_coding - CCDS35965.1 1 669.0 61.0 3.6 0.1 288.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000060301 2610008E11Rik ENSMUST00000220220 ENSMUSP00000151822 TRANSLATION protein_coding - - 2 154.0 0.0 2.0 0.0 78.4 0.0 -4,-6 0.0 - 2.802 MINOR ENSMUSG00000060301 2610008E11Rik ENSMUST00000219729 - NO_TRANSLATION retained_intron ENSMUSG00000060301 2610008E11Rik ENSMUST00000218854 ENSMUSP00000151709 TRANSLATION protein_coding stop - 3 194.0 2.0 2.8 0.0 78.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000010461 Eya4 ENSMUST00000218867 - NO_TRANSLATION retained_intron ENSMUSG00000010461 Eya4 ENSMUST00000220299 ENSMUSP00000151287 TRANSLATION protein_coding - CCDS83687.1 1 616.0 4.0 6.0 15.3 0.0 0.0 -4,-5 0.8428 2 13.508 MINOR ENSMUSG00000010461 Eya4 ENSMUST00000218956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010461 Eya4 ENSMUST00000219315 ENSMUSP00000151483 TRANSLATION protein_coding - - 5 639.0 4.0 6.0 16.1 27.3 0.0 -4,-5 0.8152 2 13.704 ALTERNATIVE:1 ENSMUSG00000010461 Eya4 ENSMUST00000220038 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010461 Eya4 ENSMUST00000092665 ENSMUSP00000090335 TRANSLATION protein_coding - CCDS35867.1 1 616.0 4.0 6.0 17.3 27.3 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:4 ENSMUSG00000010461 Eya4 ENSMUST00000218049 ENSMUSP00000151968 TRANSLATION protein_coding stop - 5 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000039497 Dse ENSMUST00000217051 ENSMUSP00000150789 TRANSLATION protein_coding stop - 5 353.0 0.0 5.0 0.0 0.0 0.0 -4,-5 0.0101 2 -2.0 MINOR ENSMUSG00000039497 Dse ENSMUST00000216774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039497 Dse ENSMUST00000048010 ENSMUSP00000040074 TRANSLATION protein_coding - CCDS23776.1 1 958.0 0.0 7.0 22.3 0.0 0.0 3,-2 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000039497 Dse ENSMUST00000215547 ENSMUSP00000149947 TRANSLATION protein_coding stop - 3 181.0 0.0 2.0 0.0 0.0 0.0 3,-2 0.0453 - -2.0 MINOR ENSMUSG00000039497 Dse ENSMUST00000216194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049038 Mterf2 ENSMUST00000214607 ENSMUSP00000150772 TRANSLATION protein_coding stop - 2 70.0 0.0 0.75 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000049038 Mterf2 ENSMUST00000217027 ENSMUSP00000150699 TRANSLATION protein_coding stop - 3 86.0 0.0 1.25 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000049038 Mterf2 ENSMUST00000050813 ENSMUSP00000062762 TRANSLATION protein_coding - CCDS24088.1 1 385.0 0.0 2.25 9.4 83.8 0.0 -4,0 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000049038 Mterf2 ENSMUST00000214193 ENSMUSP00000150091 TRANSLATION protein_coding stop - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000055493 Epm2a ENSMUST00000161438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055493 Epm2a ENSMUST00000069106 ENSMUSP00000066050 TRANSLATION protein_coding - CCDS23698.1 1 330.0 9.0 3.5 8.7 80.2 0.0 -4,-2 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000078440 Dohh ENSMUST00000142346 ENSMUSP00000122952 TRANSLATION protein_coding stop - 2 187.0 0.0 3.25 0.0 48.6 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000078440 Dohh ENSMUST00000134592 ENSMUSP00000120386 TRANSLATION protein_coding stop - 3 73.0 0.0 1.0 0.0 13.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000078440 Dohh ENSMUST00000121047 ENSMUSP00000113112 TRANSLATION protein_coding - - 2 213.0 0.0 3.58 0.0 48.6 0.0 -4,-5 0.0004 2 7.122 MINOR ENSMUSG00000078440 Dohh ENSMUST00000145416 - NO_TRANSLATION retained_intron ENSMUSG00000078440 Dohh ENSMUST00000072751 ENSMUSP00000072534 TRANSLATION protein_coding - CCDS35997.1 1 302.0 0.0 4.58 20.6 93.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000051346 Spryd4 ENSMUST00000061995 ENSMUSP00000054731 TRANSLATION protein_coding - CCDS24264.1 1 207.0 0.0 1.0 14.5 35.6 0.0 -4,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000025353 Ormdl2 ENSMUST00000219215 ENSMUSP00000151335 TRANSLATION protein_coding - CCDS24295.1 1 153.0 0.0 3.0 36.9 182.0 1.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025353 Ormdl2 ENSMUST00000219524 ENSMUSP00000151697 TRANSLATION protein_coding - CCDS24295.1 2 153.0 0.0 3.0 36.9 182.0 1.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025353 Ormdl2 ENSMUST00000026409 ENSMUSP00000026409 TRANSLATION protein_coding - CCDS24295.1 1 153.0 0.0 3.0 36.9 182.0 1.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025353 Ormdl2 ENSMUST00000217685 ENSMUSP00000151644 TRANSLATION protein_coding - - 1 94.0 0.0 2.0 0.0 121.4 0.0 -4,-6 0.0 2 6.366 MINOR ENSMUSG00000047868 Or6c201 ENSMUST00000204712 ENSMUSP00000144960 TRANSLATION protein_coding - CCDS24307.1 5 311.0 0.0 1.0 5.5 148.0 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047868 Or6c201 ENSMUST00000203887 ENSMUSP00000144950 TRANSLATION protein_coding - CCDS24307.1 3 311.0 0.0 1.0 5.5 148.0 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047868 Or6c201 ENSMUST00000204250 ENSMUSP00000144892 TRANSLATION protein_coding - CCDS24307.1 5 311.0 0.0 1.0 5.5 148.0 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047868 Or6c201 ENSMUST00000062314 ENSMUSP00000055193 TRANSLATION protein_coding - CCDS24307.1 - 311.0 0.0 1.0 5.5 148.0 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020238 Ncln ENSMUST00000130400 - NO_TRANSLATION retained_intron ENSMUSG00000020238 Ncln ENSMUST00000153205 - NO_TRANSLATION retained_intron ENSMUSG00000020238 Ncln ENSMUST00000124437 ENSMUSP00000115235 TRANSLATION protein_coding start - 5 64.0 0.0 0.4 0.0 0.0 2.0 -4,-6 0.0005 2 -2.0 MINOR ENSMUSG00000020238 Ncln ENSMUST00000125521 - NO_TRANSLATION retained_intron ENSMUSG00000020238 Ncln ENSMUST00000118498 ENSMUSP00000112744 TRANSLATION protein_coding - - 5 562.0 0.0 0.8 19.8 44.0 3.0 -4,-7 0.8554 16 14.002 MINOR ENSMUSG00000020238 Ncln ENSMUST00000151701 - NO_TRANSLATION retained_intron ENSMUSG00000020238 Ncln ENSMUST00000136721 - NO_TRANSLATION retained_intron ENSMUSG00000020238 Ncln ENSMUST00000151680 - NO_TRANSLATION retained_intron ENSMUSG00000020238 Ncln ENSMUST00000020463 ENSMUSP00000020463 TRANSLATION protein_coding - CCDS36000.1 1 563.0 0.0 1.2 19.8 44.0 3.0 -4,-7 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000048015 Neurod4 ENSMUST00000061571 ENSMUSP00000051379 TRANSLATION protein_coding - CCDS24353.1 1 330.0 0.0 0.6 18.3 189.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095022 Gm20765 ENSMUST00000181703 ENSMUSP00000137878 TRANSLATION protein_coding - - 2 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000095022 Gm20765 ENSMUST00000181707 ENSMUSP00000137866 TRANSLATION protein_coding - - 3 261.0 0.0 0.64 0.0 93.9 0.0 -4,-5 0.7754 - 12.0 PRINCIPAL:1 ENSMUSG00000023068 Nus1 ENSMUST00000218983 - NO_TRANSLATION retained_intron ENSMUSG00000023068 Nus1 ENSMUST00000023830 ENSMUSP00000023830 TRANSLATION protein_coding - CCDS23841.1 1 297.0 0.0 3.515 9.3 32.0 0.0 0,-4 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000039914 Coq10a ENSMUST00000219934 - NO_TRANSLATION retained_intron ENSMUSG00000039914 Coq10a ENSMUST00000220111 - NO_TRANSLATION retained_intron ENSMUSG00000039914 Coq10a ENSMUST00000220027 ENSMUSP00000151609 TRANSLATION protein_coding - - 5 217.0 0.0 4.45 0.1 86.7 0.0 -2,-5 0.0745 6 11.736 MINOR ENSMUSG00000039914 Coq10a ENSMUST00000043211 ENSMUSP00000036213 TRANSLATION protein_coding - CCDS36089.1 5 259.0 0.0 4.582 0.1 85.2 0.0 -1,3 0.3329 6 11.898 MINOR ENSMUSG00000039914 Coq10a ENSMUST00000218507 ENSMUSP00000151526 TRANSLATION nonsense_mediated_decay start - 3 41.0 0.0 0.45 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000039914 Coq10a ENSMUST00000220227 ENSMUSP00000151645 TRANSLATION protein_coding - - 5 249.0 0.0 4.45 8.1 86.7 0.0 -1,3 1.0 6 14.736 PRINCIPAL:1 ENSMUSG00000039914 Coq10a ENSMUST00000219815 ENSMUSP00000152045 TRANSLATION protein_coding stop - 2 47.0 0.0 1.2 0.0 24.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000044921 Rassf9 ENSMUST00000055355 ENSMUSP00000054767 TRANSLATION protein_coding - - 5 433.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1318 - 0.0 MINOR ENSMUSG00000044921 Rassf9 ENSMUST00000219445 ENSMUSP00000151843 TRANSLATION protein_coding - CCDS36048.1 1 435.0 0.0 0.0 12.5 0.0 0.0 -4,-7 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000044921 Rassf9 ENSMUST00000220230 - NO_TRANSLATION retained_intron ENSMUSG00000023175 Bsg ENSMUST00000180235 - NO_TRANSLATION retained_intron ENSMUSG00000023175 Bsg ENSMUST00000105381 ENSMUSP00000101020 TRANSLATION protein_coding - - 1 218.0 0.0 4.275 0.0 39.7 3.0 -4,-5 0.0023 8 4.908 MINOR ENSMUSG00000023175 Bsg ENSMUST00000178383 ENSMUSP00000137126 TRANSLATION protein_coding start - 5 197.0 0.0 3.591 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000023175 Bsg ENSMUST00000179781 ENSMUSP00000136487 TRANSLATION protein_coding - CCDS35967.1 1 273.0 0.0 5.275 3.4 39.7 3.0 1,-3 0.3571 9 7.912 MINOR ENSMUSG00000023175 Bsg ENSMUST00000179201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023175 Bsg ENSMUST00000067036 ENSMUSP00000070751 TRANSLATION protein_coding - CCDS23985.1 1 389.0 0.0 6.275 2.3 81.9 3.0 2,-2 1.0 10 12.542 PRINCIPAL:1 ENSMUSG00000049573 Or6c68 ENSMUST00000063168 ENSMUSP00000054927 TRANSLATION protein_coding - CCDS24313.1 - 312.0 0.0 1.0 11.5 154.3 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049573 Or6c68 ENSMUST00000215503 ENSMUSP00000149258 TRANSLATION protein_coding - CCDS24313.1 5 312.0 0.0 1.0 11.5 154.3 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058589 Anks1b ENSMUST00000182356 ENSMUSP00000138234 TRANSLATION protein_coding - CCDS59554.1 5 404.0 0.0 6.76 0.0 163.0 0.0 -4,-5 0.0089 11 0.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058589 Anks1b ENSMUST00000179694 ENSMUSP00000136146 TRANSLATION protein_coding - CCDS83746.1 5 266.0 0.0 3.68 5.6 75.8 0.0 -4,-5 0.345 10 1.839 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000099366 ENSMUSP00000096967 TRANSLATION protein_coding - CCDS83746.1 5 266.0 0.0 3.68 5.6 75.8 0.0 -4,-5 0.345 10 1.839 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182430 ENSMUSP00000138660 TRANSLATION protein_coding - CCDS59553.1 5 426.0 0.0 7.51 2.2 199.6 0.0 -4,-5 0.1337 13 0.48 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182600 ENSMUSP00000138650 TRANSLATION protein_coding - - 5 388.0 0.0 6.76 0.0 163.0 0.0 -4,-5 0.0 10 0.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000179337 ENSMUSP00000136410 TRANSLATION protein_coding - CCDS83746.1 5 266.0 0.0 3.68 5.6 75.8 0.0 -4,-5 0.345 10 1.839 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000183136 ENSMUSP00000138738 TRANSLATION protein_coding - - 5 509.0 0.0 7.51 7.7 199.6 0.0 -4,-5 0.542 14 2.679 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182936 ENSMUSP00000138209 TRANSLATION protein_coding stop - 5 562.0 0.0 3.6 0.0 127.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000099364 ENSMUSP00000096965 TRANSLATION protein_coding - - 5 460.0 0.0 7.51 7.5 199.6 0.0 -4,-5 0.4952 11 2.601 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182284 ENSMUSP00000138794 TRANSLATION protein_coding - CCDS59552.1 5 451.0 0.0 7.51 3.3 199.6 0.0 -4,-5 0.1104 13 0.921 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000183109 ENSMUSP00000138667 TRANSLATION protein_coding start - 1 138.0 0.0 0.36 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182427 ENSMUSP00000138480 TRANSLATION protein_coding stop - 5 223.0 0.0 3.83 0.0 123.8 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182053 ENSMUSP00000138644 TRANSLATION protein_coding - - 5 394.0 0.0 7.51 5.0 199.6 0.0 -4,-6 0.3129 11 1.599 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182045 ENSMUSP00000138679 TRANSLATION protein_coding - - 3 76.0 0.0 1.08 0.0 32.7 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182960 ENSMUSP00000138222 TRANSLATION protein_coding - - 5 450.0 0.0 7.51 3.3 199.6 0.0 -4,-5 0.0692 13 0.921 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000183002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058589 Anks1b ENSMUST00000183145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058589 Anks1b ENSMUST00000182907 ENSMUSP00000138614 TRANSLATION nonsense_mediated_decay - - 5 50.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000183156 ENSMUSP00000138539 TRANSLATION protein_coding - - 5 1259.0 0.0 11.97 8.5 330.5 0.0 -4,-5 1.0 23 15.0 PRINCIPAL:1 ENSMUSG00000058589 Anks1b ENSMUST00000183024 ENSMUSP00000138256 TRANSLATION protein_coding start - 5 128.0 0.0 0.6 0.0 0.0 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182595 ENSMUSP00000138314 TRANSLATION protein_coding - - 5 486.0 0.0 7.51 5.0 199.6 0.0 -4,-5 0.3134 15 1.599 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182550 ENSMUSP00000138643 TRANSLATION protein_coding - - 5 511.0 0.0 7.51 7.7 199.6 0.0 -4,-5 0.542 15 2.679 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182083 ENSMUSP00000138576 TRANSLATION protein_coding - - 2 19.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0082 - 0.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000183051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058589 Anks1b ENSMUST00000183012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058589 Anks1b ENSMUST00000182113 ENSMUSP00000138655 TRANSLATION protein_coding - CCDS59551.1 5 510.0 0.0 7.51 7.7 199.6 0.0 -4,-5 0.6219 15 2.679 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182966 ENSMUSP00000138610 TRANSLATION protein_coding - - 5 291.0 0.0 3.68 6.7 75.8 0.0 -4,-6 0.4884 10 2.28 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182202 ENSMUSP00000138398 TRANSLATION protein_coding stop - 5 28.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182786 ENSMUSP00000138720 TRANSLATION protein_coding - - 5 357.0 0.0 6.01 3.3 136.3 0.0 -4,-5 0.1059 9 0.921 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182192 ENSMUSP00000138701 TRANSLATION protein_coding stop - 5 37.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058589 Anks1b ENSMUST00000182003 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019907 Ppp1r12a ENSMUST00000219559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019907 Ppp1r12a ENSMUST00000219759 ENSMUSP00000151478 TRANSLATION protein_coding start - 1 506.0 0.0 4.31 0.0 114.3 0.0 -4,-6 0.0 15 -2.0 MINOR ENSMUSG00000019907 Ppp1r12a ENSMUST00000219068 - NO_TRANSLATION retained_intron ENSMUSG00000019907 Ppp1r12a ENSMUST00000218773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019907 Ppp1r12a ENSMUST00000070663 ENSMUSP00000069257 TRANSLATION protein_coding - CCDS36052.1 1 1004.0 0.0 8.9 5.1 151.7 0.0 -4,-5 0.5558 32 5.784 MINOR ENSMUSG00000019907 Ppp1r12a ENSMUST00000219263 ENSMUSP00000151842 TRANSLATION protein_coding - - 5 1029.0 0.0 10.31 10.2 230.6 0.0 -4,-5 1.0 31 15.0 PRINCIPAL:1 ENSMUSG00000019907 Ppp1r12a ENSMUST00000218161 - NO_TRANSLATION retained_intron ENSMUSG00000019907 Ppp1r12a ENSMUST00000219653 - NO_TRANSLATION retained_intron ENSMUSG00000009291 Pttg1ip ENSMUST00000162429 ENSMUSP00000124457 TRANSLATION protein_coding - - 2 120.0 0.0 0.0 0.0 0.0 4.0 4,-1 0.1078 - 0.0 ALTERNATIVE:2 ENSMUSG00000009291 Pttg1ip ENSMUST00000162598 ENSMUSP00000124652 TRANSLATION nonsense_mediated_decay - - 3 39.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0838 - -2.0 MINOR ENSMUSG00000009291 Pttg1ip ENSMUST00000161165 ENSMUSP00000124774 TRANSLATION protein_coding stop - 5 111.0 0.0 0.0 0.0 0.0 4.0 -4,-6 0.0374 3 -2.0 MINOR ENSMUSG00000009291 Pttg1ip ENSMUST00000167006 - NO_TRANSLATION retained_intron ENSMUSG00000009291 Pttg1ip ENSMUST00000161789 ENSMUSP00000125094 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0838 - -2.0 MINOR ENSMUSG00000009291 Pttg1ip ENSMUST00000162895 - NO_TRANSLATION retained_intron ENSMUSG00000009291 Pttg1ip ENSMUST00000162943 ENSMUSP00000124313 TRANSLATION protein_coding - - 3 111.0 0.0 0.0 0.0 0.0 4.0 -4,-7 0.136 - 0.0 ALTERNATIVE:2 ENSMUSG00000009291 Pttg1ip ENSMUST00000009435 ENSMUSP00000009435 TRANSLATION protein_coding - CCDS23957.1 1 174.0 0.0 0.0 2.1 0.0 4.0 4,-1 1.0 4 1.0 PRINCIPAL:2 ENSMUSG00000009291 Pttg1ip ENSMUST00000218797 - NO_TRANSLATION retained_intron ENSMUSG00000009291 Pttg1ip ENSMUST00000159116 - NO_TRANSLATION retained_intron ENSMUSG00000019817 Plagl1 ENSMUST00000130638 - NO_TRANSLATION retained_intron ENSMUSG00000019817 Plagl1 ENSMUST00000143582 ENSMUSP00000115595 TRANSLATION protein_coding stop - 5 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0416 - -2.0 MINOR ENSMUSG00000019817 Plagl1 ENSMUST00000193426 ENSMUSP00000141514 TRANSLATION protein_coding stop - 1 121.0 16.0 2.5 0.0 68.7 0.0 -4,-7 0.0475 - -2.0 MINOR ENSMUSG00000019817 Plagl1 ENSMUST00000123135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000124252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000144437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000121325 ENSMUSP00000112889 TRANSLATION protein_coding - - 1 678.0 28.0 2.5 0.0 68.7 0.0 -4,-7 0.7934 - 14.0 PRINCIPAL:2 ENSMUSG00000019817 Plagl1 ENSMUST00000129989 - NO_TRANSLATION retained_intron ENSMUSG00000019817 Plagl1 ENSMUST00000141944 - NO_TRANSLATION retained_intron ENSMUSG00000019817 Plagl1 ENSMUST00000141068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000135261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000150773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000126880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000138433 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000139262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000121766 ENSMUSP00000113710 TRANSLATION protein_coding - - 1 678.0 28.0 2.5 0.0 68.7 0.0 -4,-7 0.7934 - 14.0 PRINCIPAL:2 ENSMUSG00000019817 Plagl1 ENSMUST00000130894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000145103 ENSMUSP00000120581 TRANSLATION protein_coding stop - 2 17.0 2.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019817 Plagl1 ENSMUST00000135826 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000121646 ENSMUSP00000112847 TRANSLATION protein_coding - CCDS48501.1 1 704.0 28.0 2.5 0.0 68.7 0.0 -4,-7 0.3256 - 14.0 ALTERNATIVE:2 ENSMUSG00000019817 Plagl1 ENSMUST00000130449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000149881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000130800 - NO_TRANSLATION retained_intron ENSMUSG00000019817 Plagl1 ENSMUST00000135095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019817 Plagl1 ENSMUST00000130313 ENSMUSP00000117321 TRANSLATION protein_coding stop - 3 117.0 16.0 2.5 0.0 68.7 0.0 -4,-7 0.0475 - -2.0 MINOR ENSMUSG00000071392 Ect2l ENSMUST00000207827 ENSMUSP00000146490 TRANSLATION protein_coding - - 5 909.0 0.0 6.765 2.2 196.7 0.0 -4,-5 0.675 3 8.48 ALTERNATIVE:2 ENSMUSG00000071392 Ect2l ENSMUST00000208948 ENSMUSP00000146899 TRANSLATION protein_coding - - 5 953.0 0.0 6.765 3.5 196.7 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:4 ENSMUSG00000071392 Ect2l ENSMUST00000207148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071392 Ect2l ENSMUST00000215232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071392 Ect2l ENSMUST00000209178 ENSMUSP00000147170 TRANSLATION protein_coding - - 5 861.0 0.0 4.965 0.0 170.4 0.0 -4,-5 0.0214 2 3.734 MINOR ENSMUSG00000071392 Ect2l ENSMUST00000095817 ENSMUSP00000093497 TRANSLATION protein_coding - CCDS56693.1 5 911.0 0.0 6.765 2.2 196.7 0.0 -4,-5 0.9019 3 8.48 ALTERNATIVE:2 ENSMUSG00000071392 Ect2l ENSMUST00000216336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025352 Gdf11 ENSMUST00000026408 ENSMUSP00000026408 TRANSLATION protein_coding - CCDS24296.1 1 405.0 0.0 1.5 1.2 235.8 0.0 3,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000035694 Caps2 ENSMUST00000092176 ENSMUSP00000089815 TRANSLATION protein_coding - CCDS78896.1 1 550.0 6.0 2.22 0.3 0.0 0.0 -4,-5 0.3664 - 12.0 ALTERNATIVE:2 ENSMUSG00000035694 Caps2 ENSMUST00000170013 ENSMUSP00000129887 TRANSLATION protein_coding - CCDS24172.2 1 592.0 6.0 2.22 1.6 0.0 0.0 -4,-2 1.0 - 13.0 PRINCIPAL:2 ENSMUSG00000035694 Caps2 ENSMUST00000132994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037542 Aldh8a1 ENSMUST00000042699 ENSMUSP00000038878 TRANSLATION protein_coding - CCDS23723.1 1 487.0 27.0 7.0 33.2 556.7 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000037542 Aldh8a1 ENSMUST00000161285 - NO_TRANSLATION retained_intron ENSMUSG00000037542 Aldh8a1 ENSMUST00000159163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039462 Col10a1 ENSMUST00000105511 ENSMUSP00000101150 TRANSLATION protein_coding - CCDS23780.1 2 680.0 3.0 0.4 11.4 227.2 0.0 4,-1 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000094347 Or6c208 ENSMUST00000214064 ENSMUSP00000149354 TRANSLATION protein_coding - CCDS24316.1 5 319.0 0.0 1.0 5.6 172.8 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094347 Or6c208 ENSMUST00000082342 ENSMUSP00000080953 TRANSLATION protein_coding - CCDS24316.1 - 319.0 0.0 1.0 5.6 172.8 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000001665 Gstt3 ENSMUST00000133869 ENSMUSP00000134134 TRANSLATION protein_coding start - 3 147.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001665 Gstt3 ENSMUST00000174649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001665 Gstt3 ENSMUST00000218091 - NO_TRANSLATION retained_intron ENSMUSG00000001665 Gstt3 ENSMUST00000174187 ENSMUSP00000133576 TRANSLATION nonsense_mediated_decay - - 5 119.0 4.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000001665 Gstt3 ENSMUST00000173537 ENSMUSP00000133498 TRANSLATION protein_coding - - 3 200.0 11.0 4.46 1.4 43.8 0.0 -4,-5 0.0143 5 12.812 MINOR ENSMUSG00000001665 Gstt3 ENSMUST00000001715 ENSMUSP00000001715 TRANSLATION protein_coding - CCDS23931.1 1 241.0 11.0 5.91 14.7 73.1 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000040258 Nxph4 ENSMUST00000095266 ENSMUSP00000092900 TRANSLATION protein_coding - CCDS36081.1 1 304.0 0.0 0.0 3.4 224.6 0.0 3,-2 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000042846 Lrrtm3 ENSMUST00000133588 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042846 Lrrtm3 ENSMUST00000148712 - NO_TRANSLATION retained_intron ENSMUSG00000042846 Lrrtm3 ENSMUST00000105439 ENSMUSP00000101079 TRANSLATION protein_coding - CCDS35925.1 1 582.0 0.0 0.6 16.0 137.9 0.0 1,-3 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000042846 Lrrtm3 ENSMUST00000131945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036955 Kifbp ENSMUST00000162263 - NO_TRANSLATION retained_intron ENSMUSG00000036955 Kifbp ENSMUST00000159722 - NO_TRANSLATION retained_intron ENSMUSG00000036955 Kifbp ENSMUST00000159704 ENSMUSP00000134770 TRANSLATION protein_coding - - 1 384.0 0.0 1.58 0.0 94.8 0.0 -4,-5 0.0183 4 6.0 MINOR ENSMUSG00000036955 Kifbp ENSMUST00000208223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036955 Kifbp ENSMUST00000162759 ENSMUSP00000125236 TRANSLATION protein_coding start - 5 142.0 0.0 1.58 0.0 86.5 0.0 -4,-6 0.0227 2 -2.0 MINOR ENSMUSG00000036955 Kifbp ENSMUST00000160228 - NO_TRANSLATION retained_intron ENSMUSG00000036955 Kifbp ENSMUST00000162525 ENSMUSP00000125162 TRANSLATION protein_coding - - 5 293.0 0.0 1.58 0.1 49.0 0.0 -4,-5 0.0421 4 6.0 MINOR ENSMUSG00000036955 Kifbp ENSMUST00000065887 ENSMUSP00000065160 TRANSLATION protein_coding - CCDS23890.1 1 617.0 0.0 1.58 9.2 401.4 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000036955 Kifbp ENSMUST00000162648 ENSMUSP00000125070 TRANSLATION nonsense_mediated_decay start - 1 31.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000051716 Apon ENSMUST00000060782 ENSMUSP00000059142 TRANSLATION protein_coding - CCDS24267.1 2 251.0 0.0 0.6 0.8 243.7 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000051716 Apon ENSMUST00000218722 ENSMUSP00000151553 TRANSLATION protein_coding - CCDS24267.1 - 251.0 0.0 0.6 0.8 243.7 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000071185 Or1i2 ENSMUST00000213877 ENSMUSP00000150167 TRANSLATION protein_coding - CCDS23968.1 5 313.0 0.0 1.0 10.5 170.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071185 Or1i2 ENSMUST00000095473 ENSMUSP00000093127 TRANSLATION protein_coding - CCDS23968.1 2 313.0 0.0 1.0 10.5 170.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071185 Or1i2 ENSMUST00000205085 ENSMUSP00000145185 TRANSLATION protein_coding - CCDS23968.1 - 313.0 0.0 1.0 10.5 170.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071185 Or1i2 ENSMUST00000203305 ENSMUSP00000145032 TRANSLATION protein_coding - CCDS23968.1 5 313.0 0.0 1.0 10.5 170.4 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020140 Lgr5 ENSMUST00000173619 - NO_TRANSLATION retained_intron ENSMUSG00000020140 Lgr5 ENSMUST00000129309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020140 Lgr5 ENSMUST00000173740 ENSMUSP00000133707 TRANSLATION protein_coding - - 5 835.0 0.0 12.25 1.7 211.3 9.0 3,-2 0.0863 2 7.263 MINOR ENSMUSG00000020140 Lgr5 ENSMUST00000172806 ENSMUSP00000133860 TRANSLATION protein_coding - - 5 883.0 0.0 12.5 3.8 221.8 9.0 3,-2 0.3502 2 9.21 MINOR ENSMUSG00000020140 Lgr5 ENSMUST00000105272 - NO_TRANSLATION retained_intron ENSMUSG00000020140 Lgr5 ENSMUST00000144732 - NO_TRANSLATION retained_intron ENSMUSG00000020140 Lgr5 ENSMUST00000149008 - NO_TRANSLATION retained_intron ENSMUSG00000020140 Lgr5 ENSMUST00000020350 ENSMUSP00000020350 TRANSLATION protein_coding - CCDS24180.1 1 907.0 0.0 13.25 8.7 261.5 9.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000038528 Mfsd4b5 ENSMUST00000073618 ENSMUSP00000073304 TRANSLATION protein_coding - CCDS48541.1 1 156.0 0.0 0.0 0.0 0.0 11.0 -4,-6 0.0609 1 0.0 MINOR ENSMUSG00000038528 Mfsd4b5 ENSMUST00000170579 ENSMUSP00000126439 TRANSLATION protein_coding - CCDS48542.1 2 479.0 0.0 0.0 0.1 49.6 19.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000038528 Mfsd4b5 ENSMUST00000164566 ENSMUSP00000130944 TRANSLATION protein_coding - CCDS23791.1 1 151.0 0.0 0.0 0.3 0.0 11.0 -4,-6 0.0609 1 0.0 MINOR ENSMUSG00000038528 Mfsd4b5 ENSMUST00000045524 ENSMUSP00000040341 TRANSLATION protein_coding stop - 3 100.0 0.0 0.0 0.0 0.0 7.0 -4,-7 0.0044 - -2.0 MINOR ENSMUSG00000038528 Mfsd4b5 ENSMUST00000170505 ENSMUSP00000131497 TRANSLATION protein_coding start - 3 118.0 0.0 0.0 0.0 0.0 3.0 -4,-2 0.0003 - -2.0 MINOR ENSMUSG00000040006 Ginm1 ENSMUST00000133796 - NO_TRANSLATION retained_intron ENSMUSG00000040006 Ginm1 ENSMUST00000065124 ENSMUSP00000070236 TRANSLATION protein_coding start - - 99.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0133 - -2.0 MINOR ENSMUSG00000040006 Ginm1 ENSMUST00000188270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040006 Ginm1 ENSMUST00000124838 ENSMUSP00000119129 TRANSLATION protein_coding - CCDS83678.1 1 328.0 0.0 0.0 4.2 0.0 1.0 2,-3 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000040006 Ginm1 ENSMUST00000124447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040006 Ginm1 ENSMUST00000039763 ENSMUSP00000040961 TRANSLATION protein_coding - CCDS48495.1 1 327.0 0.0 0.0 0.0 0.0 1.0 2,-3 0.4455 1 0.0 MINOR ENSMUSG00000019865 Nmbr ENSMUST00000190751 ENSMUSP00000140223 TRANSLATION protein_coding - - 1 179.0 0.0 1.2 0.0 75.6 5.0 -4,-6 0.0036 - 0.0 MINOR ENSMUSG00000019865 Nmbr ENSMUST00000186175 - NO_TRANSLATION retained_intron ENSMUSG00000019865 Nmbr ENSMUST00000187449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019865 Nmbr ENSMUST00000188021 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019865 Nmbr ENSMUST00000186382 ENSMUSP00000139612 TRANSLATION nonsense_mediated_decay - - 1 257.0 0.0 3.08 0.0 138.3 8.0 -4,-6 0.0032 - -2.0 MINOR ENSMUSG00000019865 Nmbr ENSMUST00000190114 ENSMUSP00000140754 TRANSLATION protein_coding - - 3 141.0 0.0 1.95 0.0 40.0 3.0 0,-3 0.0025 - 0.0 MINOR ENSMUSG00000019865 Nmbr ENSMUST00000191238 ENSMUSP00000139695 TRANSLATION protein_coding stop - 3 24.0 0.0 0.75 0.0 0.0 0.0 -3,-7 0.0 - -2.0 MINOR ENSMUSG00000019865 Nmbr ENSMUST00000020015 ENSMUSP00000020015 TRANSLATION protein_coding - CCDS23707.1 1 390.0 0.0 5.08 10.9 183.7 10.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000035397 Klf16 ENSMUST00000038558 ENSMUSP00000048825 TRANSLATION protein_coding - CCDS24026.1 1 251.0 12.0 1.2 0.1 49.5 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000019851 Perp ENSMUST00000019998 ENSMUSP00000019998 TRANSLATION protein_coding - CCDS23714.1 1 193.0 0.0 1.5 11.4 42.4 0.0 -1,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000015312 Gadd45b ENSMUST00000220246 ENSMUSP00000151426 TRANSLATION protein_coding - - 2 145.0 0.0 2.6 8.2 66.4 0.0 -4,-7 0.2512 - 12.05 MINOR ENSMUSG00000015312 Gadd45b ENSMUST00000015456 ENSMUSP00000015456 TRANSLATION protein_coding - CCDS24038.1 1 160.0 0.0 3.0 34.9 66.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000015312 Gadd45b ENSMUST00000219449 - NO_TRANSLATION retained_intron ENSMUSG00000034024 Cct2 ENSMUST00000219690 ENSMUSP00000152005 TRANSLATION protein_coding start - 5 115.0 7.0 2.33 0.0 89.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034024 Cct2 ENSMUST00000219573 ENSMUSP00000151306 TRANSLATION protein_coding - - 3 181.0 10.0 3.55 0.0 97.8 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000034024 Cct2 ENSMUST00000218502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034024 Cct2 ENSMUST00000047672 ENSMUSP00000036288 TRANSLATION protein_coding - CCDS36067.1 1 535.0 23.0 13.91 34.9 494.1 0.0 -4,-5 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000034024 Cct2 ENSMUST00000219036 ENSMUSP00000151587 TRANSLATION protein_coding stop - 2 217.0 13.0 5.5 0.0 186.9 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000034024 Cct2 ENSMUST00000218719 ENSMUSP00000151890 TRANSLATION protein_coding stop - 3 85.0 6.0 2.5 0.0 104.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000034024 Cct2 ENSMUST00000218059 ENSMUSP00000151958 TRANSLATION protein_coding stop - 3 64.0 6.0 1.75 0.0 75.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020081 Tacr2 ENSMUST00000020278 ENSMUSP00000020278 TRANSLATION protein_coding - CCDS35919.1 1 384.0 0.0 3.8 4.7 193.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020090 Npffr1 ENSMUST00000020287 ENSMUSP00000020287 TRANSLATION protein_coding - CCDS48574.1 5 432.0 0.0 2.6 5.0 186.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020019 Ntn4 ENSMUST00000147080 ENSMUSP00000123306 TRANSLATION protein_coding stop - 5 143.0 0.0 1.0 0.0 154.9 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020019 Ntn4 ENSMUST00000020204 ENSMUSP00000020204 TRANSLATION protein_coding - CCDS24128.1 1 628.0 0.0 5.7 11.8 415.0 0.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000096640 Gm4312 ENSMUST00000190264 ENSMUSP00000139588 TRANSLATION protein_coding - - - 286.0 0.0 0.6 0.0 48.2 0.0 -4,-5 0.7797 - 12.0 PRINCIPAL:1 ENSMUSG00000040127 Sdr9c7 ENSMUST00000149849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040127 Sdr9c7 ENSMUST00000047134 ENSMUSP00000036628 TRANSLATION protein_coding - CCDS24256.1 1 313.0 27.0 4.0 8.7 135.7 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000040127 Sdr9c7 ENSMUST00000151614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040127 Sdr9c7 ENSMUST00000155067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040462 Os9 ENSMUST00000218798 ENSMUSP00000151466 TRANSLATION nonsense_mediated_decay start - 3 96.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0032 1 -2.0 MINOR ENSMUSG00000040462 Os9 ENSMUST00000164259 ENSMUSP00000128914 TRANSLATION protein_coding - CCDS48713.1 1 672.0 9.0 2.35 1.5 59.0 0.0 1,-3 0.5038 11 15.0 ALTERNATIVE:2 ENSMUSG00000040462 Os9 ENSMUST00000080975 ENSMUSP00000079770 TRANSLATION protein_coding - CCDS24229.1 1 617.0 9.0 2.35 1.5 59.0 0.0 1,-3 1.0 10 15.0 PRINCIPAL:2 ENSMUSG00000049858 Suox ENSMUST00000054764 ENSMUSP00000056195 TRANSLATION protein_coding - CCDS24285.1 1 546.0 24.0 1.0 11.0 405.0 0.0 -4,0 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000037012 Hk1 ENSMUST00000130422 ENSMUSP00000118601 TRANSLATION protein_coding - - 5 917.0 59.0 18.71 2.3 1062.9 0.0 -4,-5 0.4408 35 17.428 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000142527 - NO_TRANSLATION retained_intron ENSMUSG00000037012 Hk1 ENSMUST00000133429 ENSMUSP00000123375 TRANSLATION protein_coding stop - 1 49.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000149534 ENSMUSP00000119812 TRANSLATION protein_coding start/stop - 1 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000140383 ENSMUSP00000114586 TRANSLATION protein_coding stop - 1 49.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000136548 ENSMUSP00000122479 TRANSLATION protein_coding stop - 1 49.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000099691 ENSMUSP00000097282 TRANSLATION protein_coding - CCDS48577.1 1 918.0 59.0 19.16 16.8 1062.9 0.0 -4,-5 1.0 35 22.0 PRINCIPAL:1 ENSMUSG00000037012 Hk1 ENSMUST00000130091 ENSMUSP00000122791 TRANSLATION protein_coding stop - 1 49.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000134447 ENSMUSP00000122717 TRANSLATION protein_coding stop - 1 49.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000154489 ENSMUSP00000118576 TRANSLATION protein_coding stop - 1 49.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000134877 ENSMUSP00000121487 TRANSLATION protein_coding stop - 1 49.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000139228 ENSMUSP00000118166 TRANSLATION protein_coding stop - 5 184.0 12.0 5.344 0.0 191.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000143179 ENSMUSP00000120151 TRANSLATION protein_coding stop - 3 80.0 8.0 2.05 0.0 75.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000161160 - NO_TRANSLATION retained_intron ENSMUSG00000037012 Hk1 ENSMUST00000143236 ENSMUSP00000115990 TRANSLATION protein_coding stop - 1 49.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000135317 ENSMUSP00000115426 TRANSLATION protein_coding stop - 1 49.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000072357 ENSMUSP00000072195 TRANSLATION protein_coding - CCDS48578.1 5 945.0 59.0 17.66 0.0 1050.3 0.0 -4,-6 0.1417 33 14.244 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000152761 ENSMUSP00000117752 TRANSLATION protein_coding stop - 3 223.0 23.0 6.41 0.0 233.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000132926 ENSMUSP00000115218 TRANSLATION protein_coding stop - 5 49.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037012 Hk1 ENSMUST00000116238 ENSMUSP00000111946 TRANSLATION protein_coding - CCDS48578.1 1 945.0 59.0 17.66 0.0 1050.3 0.0 -4,-6 0.1417 33 14.244 MINOR ENSMUSG00000054206 Gzmm ENSMUST00000151213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054206 Gzmm ENSMUST00000020549 ENSMUSP00000020549 TRANSLATION protein_coding - CCDS23984.1 1 264.0 6.0 4.0 0.8 210.0 0.0 4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000063804 Lin28b ENSMUST00000215708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063804 Lin28b ENSMUST00000214555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063804 Lin28b ENSMUST00000079390 ENSMUSP00000078361 TRANSLATION protein_coding - CCDS35895.1 1 271.0 8.0 2.6 1.5 99.8 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000034932 Mrpl54 ENSMUST00000046114 ENSMUSP00000039951 TRANSLATION protein_coding - CCDS24049.1 1 135.0 0.0 1.8 7.2 0.0 0.0 -4,0 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000034932 Mrpl54 ENSMUST00000145452 - NO_TRANSLATION retained_intron ENSMUSG00000045111 Taar6 ENSMUST00000057080 ENSMUSP00000097603 TRANSLATION protein_coding - CCDS23739.1 - 345.0 0.0 1.0 11.4 189.3 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000009070 Rsph14 ENSMUST00000159761 - NO_TRANSLATION retained_intron ENSMUSG00000009070 Rsph14 ENSMUST00000160072 ENSMUSP00000123760 TRANSLATION protein_coding stop - 3 161.0 0.0 3.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000009070 Rsph14 ENSMUST00000159994 ENSMUSP00000125669 TRANSLATION protein_coding - - 5 154.0 0.0 3.0 0.1 0.0 0.0 -4,-5 0.0011 - 0.0 MINOR ENSMUSG00000009070 Rsph14 ENSMUST00000166088 ENSMUSP00000131632 TRANSLATION protein_coding - CCDS48597.1 5 374.0 0.0 7.08 0.0 48.0 0.0 -4,0 0.1835 3 12.0 MINOR ENSMUSG00000009070 Rsph14 ENSMUST00000160450 ENSMUSP00000125289 TRANSLATION protein_coding stop - 5 226.0 0.0 5.08 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000009070 Rsph14 ENSMUST00000179546 ENSMUSP00000136715 TRANSLATION protein_coding - CCDS48596.1 1 341.0 0.0 7.08 18.6 48.0 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000009070 Rsph14 ENSMUST00000009214 ENSMUSP00000009214 TRANSLATION protein_coding - CCDS48596.1 1 341.0 0.0 7.08 18.6 48.0 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000044617 Zbtb39 ENSMUST00000054287 ENSMUSP00000052717 TRANSLATION protein_coding - CCDS24249.1 1 712.0 28.0 0.1 14.7 117.7 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000044293 Or6c88 ENSMUST00000059957 ENSMUSP00000049790 TRANSLATION protein_coding - CCDS24323.1 - 320.0 0.0 1.0 1.0 166.4 4.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044293 Or6c88 ENSMUST00000204820 ENSMUSP00000145301 TRANSLATION protein_coding - CCDS24323.1 2 320.0 0.0 1.0 1.0 166.4 4.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074748 Atxn7l3b ENSMUST00000165438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074748 Atxn7l3b ENSMUST00000099276 ENSMUSP00000096882 TRANSLATION protein_coding - CCDS36060.1 - 97.0 0.0 0.8 11.0 0.0 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000044581 4932415D10Rik ENSMUST00000217661 ENSMUSP00000151425 TRANSLATION protein_coding - - 5 4986.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.7589 7 0.0 PRINCIPAL:1 ENSMUSG00000044581 4932415D10Rik ENSMUST00000171401 ENSMUSP00000126178 TRANSLATION protein_coding stop - - 563.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0723 - -2.0 MINOR ENSMUSG00000019803 Nr2e1 ENSMUST00000105498 ENSMUSP00000101137 TRANSLATION protein_coding - - 1 173.0 0.0 3.4 0.0 82.5 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000019803 Nr2e1 ENSMUST00000126848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019803 Nr2e1 ENSMUST00000019938 ENSMUSP00000019938 TRANSLATION protein_coding - CCDS23813.1 1 385.0 8.0 6.4 23.0 219.2 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000019803 Nr2e1 ENSMUST00000143891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019774 Mtrf1l ENSMUST00000145718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019774 Mtrf1l ENSMUST00000019908 ENSMUSP00000019908 TRANSLATION protein_coding - CCDS56684.1 1 373.0 0.0 5.95 6.3 314.2 0.0 -4,0 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000019774 Mtrf1l ENSMUST00000145687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036099 Vezt ENSMUST00000154267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036099 Vezt ENSMUST00000132735 - NO_TRANSLATION retained_intron ENSMUSG00000036099 Vezt ENSMUST00000141241 ENSMUSP00000123575 TRANSLATION nonsense_mediated_decay start - 3 98.0 0.0 0.0 0.0 110.3 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000036099 Vezt ENSMUST00000047711 ENSMUSP00000037955 TRANSLATION protein_coding - CCDS36038.1 1 780.0 0.0 0.0 4.4 308.0 1.0 -4,-5 1.0 9 4.0 PRINCIPAL:3 ENSMUSG00000036099 Vezt ENSMUST00000148450 ENSMUSP00000121105 TRANSLATION protein_coding start - 3 101.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036099 Vezt ENSMUST00000150704 ENSMUSP00000121727 TRANSLATION nonsense_mediated_decay - - 1 276.0 0.0 0.0 0.0 88.7 1.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036099 Vezt ENSMUST00000118205 ENSMUSP00000113321 TRANSLATION protein_coding - CCDS83750.1 1 639.0 0.0 0.0 0.0 308.0 1.0 -4,-5 0.1946 8 2.0 MINOR ENSMUSG00000036099 Vezt ENSMUST00000118077 ENSMUSP00000113983 TRANSLATION protein_coding - CCDS78886.1 1 617.0 0.0 0.0 3.8 308.0 1.0 -4,-5 0.7821 8 3.648 ALTERNATIVE:2 ENSMUSG00000036099 Vezt ENSMUST00000123201 ENSMUSP00000114550 TRANSLATION protein_coding stop - 3 190.0 0.0 0.0 0.0 40.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036099 Vezt ENSMUST00000119818 ENSMUSP00000113715 TRANSLATION protein_coding - CCDS78887.1 1 784.0 0.0 0.0 4.4 301.8 1.0 -4,-5 0.8965 8 4.0 ALTERNATIVE:2 ENSMUSG00000036099 Vezt ENSMUST00000150344 ENSMUSP00000122561 TRANSLATION protein_coding start/stop - 3 231.0 0.0 0.0 0.0 36.4 1.0 -4,-2 0.0017 1 -2.0 MINOR ENSMUSG00000096131 Gm9639 ENSMUST00000172205 ENSMUSP00000151514 TRANSLATION protein_coding - - - 225.0 0.0 0.0 0.0 63.5 0.0 -4,-5 0.7218 - 6.0 PRINCIPAL:1 ENSMUSG00000019935 Slc17a8 ENSMUST00000020102 ENSMUSP00000020102 TRANSLATION protein_coding - CCDS24117.1 1 601.0 0.0 8.82 0.0 155.2 8.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000019935 Slc17a8 ENSMUST00000105295 ENSMUSP00000100932 TRANSLATION protein_coding - CCDS78880.1 1 417.0 0.0 7.6 0.0 115.8 8.0 -4,-2 0.038 2 7.194 MINOR ENSMUSG00000079685 Ulbp1 ENSMUST00000169796 ENSMUSP00000128204 TRANSLATION protein_coding - - 1 306.0 0.0 2.3 0.0 0.0 3.0 0,-3 0.7237 - 6.0 PRINCIPAL:4 ENSMUSG00000079685 Ulbp1 ENSMUST00000177585 ENSMUSP00000136637 TRANSLATION protein_coding - CCDS56691.1 1 334.0 0.0 2.3 0.0 0.0 3.0 0,-3 0.496 - 6.0 ALTERNATIVE:2 ENSMUSG00000079685 Ulbp1 ENSMUST00000218087 ENSMUSP00000151680 TRANSLATION protein_coding - - 1 249.0 0.0 1.3 0.0 0.0 3.0 0,-3 0.087 - 3.39 MINOR ENSMUSG00000079685 Ulbp1 ENSMUST00000218717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079685 Ulbp1 ENSMUST00000218736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118646 Gm56820 ENSMUST00000239481 ENSMUSP00000159333 TRANSLATION protein_coding - - - 40.0 0.0 1.25 0.0 0.0 0.0 1,-3 0.747 - 6.0 PRINCIPAL:1 ENSMUSG00000020226 Slc5a4b ENSMUST00000120757 ENSMUSP00000113582 TRANSLATION protein_coding - CCDS48603.1 1 660.0 0.0 10.85 12.5 536.8 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000055862 Izumo4 ENSMUST00000218184 ENSMUSP00000151397 TRANSLATION protein_coding - CCDS35983.1 2 227.0 6.0 5.49 0.4 100.8 0.0 3,-2 1.0 6 17.142 PRINCIPAL:1 ENSMUSG00000055862 Izumo4 ENSMUST00000219422 - NO_TRANSLATION retained_intron ENSMUSG00000055862 Izumo4 ENSMUST00000218330 ENSMUSP00000151884 TRANSLATION nonsense_mediated_decay start - 3 115.0 6.0 3.41 0.0 64.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000055862 Izumo4 ENSMUST00000219420 - NO_TRANSLATION retained_intron ENSMUSG00000055862 Izumo4 ENSMUST00000219152 - NO_TRANSLATION retained_intron ENSMUSG00000055862 Izumo4 ENSMUST00000219986 - NO_TRANSLATION retained_intron ENSMUSG00000055862 Izumo4 ENSMUST00000217742 - NO_TRANSLATION retained_intron ENSMUSG00000055862 Izumo4 ENSMUST00000218538 - NO_TRANSLATION retained_intron ENSMUSG00000055862 Izumo4 ENSMUST00000218058 - NO_TRANSLATION retained_intron ENSMUSG00000055862 Izumo4 ENSMUST00000219746 - NO_TRANSLATION retained_intron ENSMUSG00000055862 Izumo4 ENSMUST00000095426 ENSMUSP00000093076 TRANSLATION protein_coding start - 5 209.0 7.0 4.99 0.0 100.8 0.0 3,-2 0.0781 5 -2.0 MINOR ENSMUSG00000055862 Izumo4 ENSMUST00000219987 - NO_TRANSLATION retained_intron ENSMUSG00000055862 Izumo4 ENSMUST00000217823 - NO_TRANSLATION retained_intron ENSMUSG00000020327 Fgf22 ENSMUST00000020577 ENSMUSP00000020577 TRANSLATION protein_coding start/stop - 3 221.0 0.0 2.348 0.0 64.8 0.0 -1,1 0.0 - -2.0 MINOR ENSMUSG00000020327 Fgf22 ENSMUST00000219228 ENSMUSP00000151743 TRANSLATION protein_coding - CCDS23988.1 1 162.0 0.0 3.83 0.8 144.7 0.0 3,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020327 Fgf22 ENSMUST00000219981 ENSMUSP00000151917 TRANSLATION protein_coding - - 1 126.0 0.0 2.0 0.0 67.0 0.0 3,-4 0.0015 - 3.678 MINOR ENSMUSG00000006728 Cdk4 ENSMUST00000123456 - NO_TRANSLATION retained_intron ENSMUSG00000006728 Cdk4 ENSMUST00000133115 ENSMUSP00000122973 TRANSLATION protein_coding stop - 5 253.0 18.0 5.75 0.0 195.3 0.0 -4,-5 0.0016 10 -2.0 MINOR ENSMUSG00000006728 Cdk4 ENSMUST00000140254 - NO_TRANSLATION retained_intron ENSMUSG00000006728 Cdk4 ENSMUST00000145670 - NO_TRANSLATION retained_intron ENSMUSG00000006728 Cdk4 ENSMUST00000135179 - NO_TRANSLATION retained_intron ENSMUSG00000006728 Cdk4 ENSMUST00000120226 ENSMUSP00000112549 TRANSLATION protein_coding - - 5 158.0 8.0 1.83 0.0 38.7 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000006728 Cdk4 ENSMUST00000142558 ENSMUSP00000116190 TRANSLATION nonsense_mediated_decay - - 5 74.0 7.0 1.0 0.0 33.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000006728 Cdk4 ENSMUST00000125682 ENSMUSP00000117234 TRANSLATION protein_coding stop - 2 271.0 18.0 6.25 0.0 195.3 0.0 -4,-5 0.0049 10 -2.0 MINOR ENSMUSG00000006728 Cdk4 ENSMUST00000006911 ENSMUSP00000006911 TRANSLATION protein_coding - CCDS24226.1 1 303.0 18.0 7.0 9.8 217.9 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000092360 Gm20441 ENSMUST00000173512 ENSMUSP00000134112 TRANSLATION protein_coding,RT start/stop - 5 252.0 11.0 5.25 0.0 151.7 0.0 -4,-5 0.7312 - -2.0 PRINCIPAL:1 ENSMUSG00000025404 R3hdm2 ENSMUST00000168079 ENSMUSP00000130506 TRANSLATION protein_coding start/stop - 3 154.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000171426 ENSMUSP00000132683 TRANSLATION protein_coding start - 3 264.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000169888 ENSMUSP00000126760 TRANSLATION protein_coding start - 1 743.0 0.0 0.75 0.0 38.3 0.0 -4,-5 0.008 9 -2.0 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000166820 ENSMUSP00000126608 TRANSLATION protein_coding - CCDS48717.1 5 1044.0 0.0 3.58 7.7 83.8 0.0 -4,-5 1.0 11 10.0 PRINCIPAL:4 ENSMUSG00000025404 R3hdm2 ENSMUST00000168268 - NO_TRANSLATION retained_intron ENSMUSG00000025404 R3hdm2 ENSMUST00000170164 ENSMUSP00000132879 TRANSLATION protein_coding stop - 2 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000064793 ENSMUSP00000069724 TRANSLATION protein_coding - CCDS24241.1 1 999.0 0.0 3.58 0.0 40.4 0.0 -4,-5 0.1671 9 6.0 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000163794 - NO_TRANSLATION retained_intron ENSMUSG00000025404 R3hdm2 ENSMUST00000111628 ENSMUSP00000107255 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000164831 ENSMUSP00000131007 TRANSLATION protein_coding - - 5 978.0 0.0 3.58 6.3 40.4 0.0 -4,-5 0.5233 9 7.582 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000165440 ENSMUSP00000133118 TRANSLATION protein_coding start/stop - 3 91.0 0.0 1.08 0.0 43.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000105249 ENSMUSP00000100884 TRANSLATION protein_coding - - 5 992.0 0.0 3.58 7.3 83.8 0.0 -4,-5 0.7579 11 9.88 ALTERNATIVE:1 ENSMUSG00000025404 R3hdm2 ENSMUST00000171823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025404 R3hdm2 ENSMUST00000168780 ENSMUSP00000127872 TRANSLATION protein_coding stop - 3 98.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000105251 ENSMUSP00000100886 TRANSLATION protein_coding - - 5 1026.0 0.0 3.58 5.1 83.8 0.0 -4,-5 0.7298 11 9.224 ALTERNATIVE:1 ENSMUSG00000025404 R3hdm2 ENSMUST00000077046 ENSMUSP00000076303 TRANSLATION protein_coding - CCDS48717.1 5 1044.0 0.0 3.58 7.7 83.8 0.0 -4,-5 1.0 11 10.0 PRINCIPAL:4 ENSMUSG00000025404 R3hdm2 ENSMUST00000164469 - NO_TRANSLATION retained_intron ENSMUSG00000025404 R3hdm2 ENSMUST00000164161 ENSMUSP00000126185 TRANSLATION nonsense_mediated_decay - - 5 102.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000171434 ENSMUSP00000131255 TRANSLATION protein_coding stop - 2 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025404 R3hdm2 ENSMUST00000105250 ENSMUSP00000100885 TRANSLATION protein_coding - - 5 1026.0 0.0 3.58 5.1 83.8 0.0 -4,-5 0.7298 11 9.224 ALTERNATIVE:1 ENSMUSG00000025404 R3hdm2 ENSMUST00000170336 ENSMUSP00000128659 TRANSLATION protein_coding - CCDS48718.1 1 1012.0 0.0 3.58 7.0 40.4 0.0 -4,-5 0.7144 9 7.792 MINOR ENSMUSG00000040134 Rdh7 ENSMUST00000047199 ENSMUSP00000039252 TRANSLATION protein_coding - CCDS24255.1 1 316.0 27.0 4.0 18.4 132.7 0.0 1,-3 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000040134 Rdh7 ENSMUST00000130374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025401 Myo1a ENSMUST00000079590 ENSMUSP00000078540 TRANSLATION protein_coding - CCDS36083.1 1 1043.0 15.0 19.37 9.1 1091.5 0.0 -4,-5 1.0 33 21.0 PRINCIPAL:1 ENSMUSG00000025401 Myo1a ENSMUST00000219882 - NO_TRANSLATION retained_intron ENSMUSG00000020308 Tpgs1 ENSMUST00000239401 ENSMUSP00000159326 TRANSLATION protein_coding - CCDS23982.1 - 303.0 0.0 0.0 5.4 0.0 0.0 -4,-2 1.0 4 2.0 PRINCIPAL:2 ENSMUSG00000020308 Tpgs1 ENSMUST00000219585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020308 Tpgs1 ENSMUST00000220175 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020308 Tpgs1 ENSMUST00000020552 ENSMUSP00000020552 TRANSLATION protein_coding - - 1 291.0 0.0 0.0 3.3 0.0 0.0 -4,-7 0.591 4 1.046 ALTERNATIVE:2 ENSMUSG00000019775 Rgs17 ENSMUST00000131996 ENSMUSP00000116291 TRANSLATION protein_coding - CCDS56685.1 1 210.0 0.0 2.5 16.9 124.1 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000019775 Rgs17 ENSMUST00000064225 ENSMUSP00000065825 TRANSLATION protein_coding - CCDS56686.1 1 230.0 0.0 2.5 1.0 124.1 0.0 -4,-2 0.3365 2 12.0 MINOR ENSMUSG00000019775 Rgs17 ENSMUST00000117676 ENSMUSP00000113519 TRANSLATION protein_coding - CCDS56685.1 1 210.0 0.0 2.5 16.9 124.1 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000019775 Rgs17 ENSMUST00000019909 ENSMUSP00000019909 TRANSLATION protein_coding stop - 5 163.0 0.0 1.5 0.0 78.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000001150 Mcm3ap ENSMUST00000219811 - NO_TRANSLATION retained_intron ENSMUSG00000001150 Mcm3ap ENSMUST00000170795 ENSMUSP00000125960 TRANSLATION protein_coding - CCDS23947.1 1 1971.0 0.0 5.12 0.1 1974.2 0.0 -4,-7 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000001150 Mcm3ap ENSMUST00000220410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001150 Mcm3ap ENSMUST00000218904 - NO_TRANSLATION retained_intron ENSMUSG00000001150 Mcm3ap ENSMUST00000218881 ENSMUSP00000151327 TRANSLATION nonsense_mediated_decay start - 5 81.0 0.0 0.6 0.0 99.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001150 Mcm3ap ENSMUST00000218361 ENSMUSP00000151973 TRANSLATION protein_coding start - 3 116.0 0.0 0.0 0.0 100.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037762 Slc16a9 ENSMUST00000155933 - NO_TRANSLATION retained_intron ENSMUSG00000037762 Slc16a9 ENSMUST00000046807 ENSMUSP00000047912 TRANSLATION protein_coding - CCDS23913.1 1 508.0 0.0 2.52 20.5 103.3 0.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020078 Vps26a ENSMUST00000105447 ENSMUSP00000101087 TRANSLATION protein_coding - CCDS35921.1 1 327.0 0.0 8.13 33.3 446.8 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000020078 Vps26a ENSMUST00000092473 ENSMUSP00000090130 TRANSLATION protein_coding - CCDS48579.1 1 359.0 0.0 8.13 4.7 446.8 0.0 -4,-2 0.3675 11 12.46 MINOR ENSMUSG00000020078 Vps26a ENSMUST00000219574 ENSMUSP00000151774 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 1.0 0.0 38.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020078 Vps26a ENSMUST00000217868 ENSMUSP00000151888 TRANSLATION protein_coding stop - 2 123.0 0.0 3.25 0.0 177.3 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000014245 Pigl ENSMUST00000014389 ENSMUSP00000014389 TRANSLATION protein_coding - CCDS24824.1 1 252.0 3.0 6.08 4.1 90.2 0.0 0,-3 1.0 2 17.0 PRINCIPAL:1 ENSMUSG00000014245 Pigl ENSMUST00000147918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042529 Kcnj12 ENSMUST00000041944 ENSMUSP00000041696 TRANSLATION protein_coding - CCDS59563.1 1 529.0 0.0 1.0 2.8 608.3 3.0 -4,0 0.4853 - 12.42 MINOR ENSMUSG00000042529 Kcnj12 ENSMUST00000108717 ENSMUSP00000104357 TRANSLATION protein_coding - CCDS24805.1 1 427.0 0.0 1.0 18.1 608.3 3.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042529 Kcnj12 ENSMUST00000089184 ENSMUSP00000086588 TRANSLATION protein_coding - CCDS24805.1 1 427.0 0.0 1.0 18.1 608.3 3.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032615 Nt5m ENSMUST00000149076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032615 Nt5m ENSMUST00000102695 ENSMUSP00000099756 TRANSLATION protein_coding - CCDS24779.1 1 220.0 6.0 4.75 3.6 93.9 0.0 -4,0 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000032615 Nt5m ENSMUST00000154699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032615 Nt5m ENSMUST00000137695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075420 Smim6 ENSMUST00000132961 ENSMUSP00000133699 TRANSLATION protein_coding - CCDS56821.1 1 56.0 0.0 1.0 0.7 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000039337 Tex19.2 ENSMUST00000039146 ENSMUSP00000037027 TRANSLATION protein_coding - CCDS25767.1 1 317.0 0.0 0.0 0.0 222.2 0.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078130 Gm11555 ENSMUST00000104929 ENSMUSP00000100533 TRANSLATION protein_coding - - - 175.0 0.0 0.0 0.8 41.4 0.0 -4,-5 0.7186 - 6.0 PRINCIPAL:1 ENSMUSG00000034757 Tmub2 ENSMUST00000135551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034757 Tmub2 ENSMUST00000156077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034757 Tmub2 ENSMUST00000100387 ENSMUSP00000097956 TRANSLATION protein_coding start - 1 358.0 0.0 1.0 0.1 36.8 3.0 -4,-7 0.1606 1 -2.0 MINOR ENSMUSG00000034757 Tmub2 ENSMUST00000156326 ENSMUSP00000116327 TRANSLATION protein_coding - CCDS25494.1 1 319.0 0.0 1.0 6.2 36.8 3.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000034757 Tmub2 ENSMUST00000036376 ENSMUSP00000047600 TRANSLATION protein_coding - CCDS25494.1 1 319.0 0.0 1.0 6.2 36.8 3.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000010362 Rdm1 ENSMUST00000152484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010362 Rdm1 ENSMUST00000133727 ENSMUSP00000118996 TRANSLATION nonsense_mediated_decay start - 1 127.0 0.0 0.0 0.0 22.1 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000010362 Rdm1 ENSMUST00000139037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010362 Rdm1 ENSMUST00000010506 ENSMUSP00000010506 TRANSLATION protein_coding - CCDS25477.1 1 281.0 0.0 0.0 2.5 52.8 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000010362 Rdm1 ENSMUST00000155222 - NO_TRANSLATION retained_intron ENSMUSG00000020536 Llgl1 ENSMUST00000108719 ENSMUSP00000104359 TRANSLATION protein_coding - CCDS48813.1 1 1036.0 0.0 9.755 0.0 138.6 0.0 -4,-2 0.4906 21 12.0 MINOR ENSMUSG00000020536 Llgl1 ENSMUST00000052346 ENSMUSP00000060749 TRANSLATION protein_coding - CCDS48812.1 1 1062.0 0.0 9.755 7.5 138.6 0.0 -4,-2 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000020536 Llgl1 ENSMUST00000128749 - NO_TRANSLATION retained_intron ENSMUSG00000020422 Tns3 ENSMUST00000131941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020422 Tns3 ENSMUST00000239091 ENSMUSP00000158873 TRANSLATION protein_coding - - - 1553.0 10.0 16.44 0.1 313.1 0.0 -4,-1 1.0 28 14.0 PRINCIPAL:2 ENSMUSG00000020422 Tns3 ENSMUST00000134823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020422 Tns3 ENSMUST00000129074 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020422 Tns3 ENSMUST00000239111 ENSMUSP00000158940 TRANSLATION protein_coding - - - 1589.0 10.0 16.365 0.0 313.1 0.0 -4,-2 0.5498 27 13.85 ALTERNATIVE:2 ENSMUSG00000020422 Tns3 ENSMUST00000020695 ENSMUSP00000020695 TRANSLATION protein_coding - CCDS36109.1 5 1440.0 10.0 15.265 0.1 275.7 0.0 -4,-5 0.1755 25 10.898 MINOR ENSMUSG00000020396 Nefh ENSMUST00000093369 ENSMUSP00000091061 TRANSLATION protein_coding - CCDS36099.1 2 1090.0 0.0 1.6 0.0 521.3 0.0 -4,-7 1.0 32 12.0 PRINCIPAL:1 ENSMUSG00000020495 Smg8 ENSMUST00000143280 ENSMUSP00000119011 TRANSLATION protein_coding start - 1 271.0 0.0 1.0 0.0 339.6 0.0 -4,-5 0.0231 2 -2.0 MINOR ENSMUSG00000020495 Smg8 ENSMUST00000020801 ENSMUSP00000020801 TRANSLATION protein_coding - CCDS25207.1 1 991.0 0.0 0.5 9.9 1153.9 0.0 -4,-7 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000072620 Slfn2 ENSMUST00000038038 ENSMUSP00000035562 TRANSLATION protein_coding - CCDS25156.1 1 378.0 0.0 0.3 0.0 37.7 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000020193 Zpbp ENSMUST00000020413 ENSMUSP00000020413 TRANSLATION protein_coding - CCDS24434.1 1 408.0 0.0 3.475 0.4 253.6 0.0 -4,-7 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000041287 Sox15 ENSMUST00000047373 ENSMUSP00000048524 TRANSLATION protein_coding - CCDS24902.1 1 231.0 0.0 0.8 7.3 93.9 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000020538 Srebf1 ENSMUST00000149238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020538 Srebf1 ENSMUST00000144942 ENSMUSP00000120777 TRANSLATION protein_coding stop - 5 1022.0 0.0 2.0 0.0 60.1 3.0 -4,-5 0.2515 3 -2.0 MINOR ENSMUSG00000020538 Srebf1 ENSMUST00000156304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020538 Srebf1 ENSMUST00000154620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020538 Srebf1 ENSMUST00000136426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020538 Srebf1 ENSMUST00000154925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020538 Srebf1 ENSMUST00000141161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020538 Srebf1 ENSMUST00000134660 ENSMUSP00000122934 TRANSLATION protein_coding start - 1 1076.0 0.0 2.0 0.0 60.1 3.0 -4,-5 0.2725 4 -2.0 MINOR ENSMUSG00000020538 Srebf1 ENSMUST00000020846 ENSMUSP00000020846 TRANSLATION protein_coding - CCDS24785.1 1 1134.0 0.0 2.0 0.4 60.1 3.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000020538 Srebf1 ENSMUST00000129869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020538 Srebf1 ENSMUST00000147967 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020538 Srebf1 ENSMUST00000136215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018920 Cxcl16 ENSMUST00000019064 ENSMUSP00000019064 TRANSLATION protein_coding - CCDS24948.1 1 246.0 0.0 1.75 0.1 0.0 1.0 1,-4 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000018920 Cxcl16 ENSMUST00000126391 ENSMUSP00000133513 TRANSLATION nonsense_mediated_decay start - 1 233.0 0.0 1.75 0.0 0.0 1.0 -2,-5 0.0895 2 -2.0 MINOR ENSMUSG00000018920 Cxcl16 ENSMUST00000154475 - NO_TRANSLATION retained_intron ENSMUSG00000041165 Spem1 ENSMUST00000045771 ENSMUSP00000037500 TRANSLATION protein_coding - CCDS36199.1 1 310.0 0.0 0.875 5.0 70.0 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000035455 Fignl1 ENSMUST00000150714 ENSMUSP00000119528 TRANSLATION protein_coding stop - 2 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035455 Fignl1 ENSMUST00000171080 ENSMUSP00000127489 TRANSLATION protein_coding - CCDS24438.1 2 683.0 14.0 1.0 0.1 161.5 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000035455 Fignl1 ENSMUST00000047689 ENSMUSP00000036932 TRANSLATION protein_coding - CCDS24438.1 1 683.0 14.0 1.0 0.1 161.5 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000035455 Fignl1 ENSMUST00000123815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035455 Fignl1 ENSMUST00000109664 ENSMUSP00000105290 TRANSLATION protein_coding - CCDS24438.1 1 683.0 14.0 1.0 0.1 161.5 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000035455 Fignl1 ENSMUST00000152345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035455 Fignl1 ENSMUST00000171938 ENSMUSP00000126340 TRANSLATION protein_coding - CCDS24438.1 1 683.0 14.0 1.0 0.1 161.5 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000017832 Hspb9 ENSMUST00000017976 ENSMUSP00000017976 TRANSLATION protein_coding - - - 168.0 0.0 0.32 0.0 43.6 0.0 -4,-2 0.773 7 6.0 PRINCIPAL:2 ENSMUSG00000017832 Hspb9 ENSMUST00000169833 ENSMUSP00000130551 TRANSLATION protein_coding - CCDS48932.1 - 199.0 0.0 0.32 0.0 43.6 0.0 -3,-1 0.352 7 6.0 ALTERNATIVE:2 ENSMUSG00000000782 Tcf7 ENSMUST00000086844 ENSMUSP00000084055 TRANSLATION protein_coding - CCDS24670.1 1 303.0 0.0 2.25 2.5 153.0 0.0 -4,-5 0.2391 1 5.908 MINOR ENSMUSG00000000782 Tcf7 ENSMUST00000238914 ENSMUSP00000158937 TRANSLATION protein_coding stop - - 192.0 0.0 2.25 0.0 79.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000000782 Tcf7 ENSMUST00000109071 ENSMUSP00000104699 TRANSLATION protein_coding - - 1 419.0 0.0 2.75 2.4 269.4 0.0 -4,-5 1.0 3 12.933 PRINCIPAL:1 ENSMUSG00000020708 Psmc5 ENSMUST00000021049 ENSMUSP00000021049 TRANSLATION protein_coding - CCDS25553.1 1 406.0 12.0 9.08 24.2 145.9 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000020708 Psmc5 ENSMUST00000133131 ENSMUSP00000138057 TRANSLATION nonsense_mediated_decay - - 2 348.0 10.0 6.83 0.0 145.9 0.0 -4,-5 0.0039 16 -2.0 MINOR ENSMUSG00000051378 Kif18b ENSMUST00000021311 ENSMUSP00000021311 TRANSLATION protein_coding - CCDS25508.1 1 834.0 11.0 5.9 0.0 371.9 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000051378 Kif18b ENSMUST00000132502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000861 Bcl11a ENSMUST00000000881 ENSMUSP00000000881 TRANSLATION protein_coding - CCDS24483.1 1 773.0 12.0 0.0 8.5 41.9 0.0 -4,-6 0.5796 10 4.872 MINOR ENSMUSG00000000861 Bcl11a ENSMUST00000109514 ENSMUSP00000105140 TRANSLATION protein_coding - CCDS56764.1 1 835.0 23.0 1.0 8.2 110.7 0.0 -4,-6 1.0 9 20.88 PRINCIPAL:1 ENSMUSG00000000861 Bcl11a ENSMUST00000118955 ENSMUSP00000112948 TRANSLATION protein_coding - CCDS48759.1 1 191.0 4.0 0.0 2.3 0.0 0.0 -4,-5 0.0943 4 0.519 MINOR ENSMUSG00000000861 Bcl11a ENSMUST00000127494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000861 Bcl11a ENSMUST00000109516 ENSMUSP00000105142 TRANSLATION protein_coding - CCDS48758.1 1 243.0 4.0 0.0 8.2 0.0 0.0 -4,-6 0.5913 4 2.88 MINOR ENSMUSG00000000861 Bcl11a ENSMUST00000124148 - NO_TRANSLATION retained_intron ENSMUSG00000018379 Srsf1 ENSMUST00000172186 ENSMUSP00000128190 TRANSLATION nonsense_mediated_decay start - 5 58.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000018379 Srsf1 ENSMUST00000079866 ENSMUSP00000133517 TRANSLATION protein_coding - CCDS36274.1 1 201.0 0.0 4.74 1.9 115.4 0.0 -4,-5 0.0971 14 10.866 MINOR ENSMUSG00000018379 Srsf1 ENSMUST00000171976 - NO_TRANSLATION retained_intron ENSMUSG00000018379 Srsf1 ENSMUST00000132983 - NO_TRANSLATION retained_intron ENSMUSG00000018379 Srsf1 ENSMUST00000134824 ENSMUSP00000114549 TRANSLATION nonsense_mediated_decay start - 3 106.0 0.0 2.83 0.0 54.3 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000018379 Srsf1 ENSMUST00000107920 ENSMUSP00000103553 TRANSLATION protein_coding - - 5 253.0 0.0 5.38 2.0 117.0 0.0 -4,-5 0.2538 15 12.268 MINOR ENSMUSG00000018379 Srsf1 ENSMUST00000139129 ENSMUSP00000120595 TRANSLATION protein_coding - CCDS36273.1 1 248.0 0.0 5.38 16.0 117.0 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000062186 Or1e35 ENSMUST00000215690 ENSMUSP00000149064 TRANSLATION protein_coding - CCDS25020.1 5 312.0 0.0 1.0 10.5 188.3 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062186 Or1e35 ENSMUST00000072991 ENSMUSP00000072756 TRANSLATION protein_coding - CCDS25020.1 - 312.0 0.0 1.0 10.5 188.3 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046811 Gltpd2 ENSMUST00000179000 ENSMUSP00000136029 TRANSLATION protein_coding - - 2 207.0 0.0 1.75 0.7 112.8 0.0 -4,-6 0.008 4 10.944 MINOR ENSMUSG00000046811 Gltpd2 ENSMUST00000057685 ENSMUSP00000049732 TRANSLATION protein_coding - CCDS24952.1 1 321.0 0.0 2.125 1.4 112.8 0.0 -3,-5 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000004043 Stat5a ENSMUST00000004145 ENSMUSP00000004145 TRANSLATION protein_coding - CCDS25439.1 1 793.0 0.0 14.05 9.1 720.9 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000004043 Stat5a ENSMUST00000154087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004043 Stat5a ENSMUST00000133036 ENSMUSP00000117204 TRANSLATION protein_coding stop - 3 51.0 0.0 0.8 0.0 78.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000004043 Stat5a ENSMUST00000135272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004043 Stat5a ENSMUST00000107357 ENSMUSP00000102980 TRANSLATION protein_coding - CCDS48933.1 1 797.0 0.0 13.65 0.0 720.9 0.0 -4,-7 0.3205 5 11.202 MINOR ENSMUSG00000004043 Stat5a ENSMUST00000107356 ENSMUSP00000102979 TRANSLATION protein_coding - CCDS25439.1 1 793.0 0.0 14.05 9.1 720.9 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000004043 Stat5a ENSMUST00000138083 ENSMUSP00000120039 TRANSLATION protein_coding stop - 2 125.0 0.0 1.9 0.0 162.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000047126 Cltc ENSMUST00000141152 - NO_TRANSLATION retained_intron ENSMUSG00000047126 Cltc ENSMUST00000103186 ENSMUSP00000099475 TRANSLATION protein_coding - CCDS25204.1 1 1675.0 0.0 30.7 34.9 901.3 0.0 -4,-5 1.0 85 12.0 PRINCIPAL:4 ENSMUSG00000047126 Cltc ENSMUST00000133501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047126 Cltc ENSMUST00000060766 ENSMUSP00000050220 TRANSLATION protein_coding - - 5 1679.0 0.0 30.7 34.9 901.3 0.0 -4,-5 0.863 85 12.0 ALTERNATIVE:1 ENSMUSG00000047126 Cltc ENSMUST00000124385 ENSMUSP00000117674 TRANSLATION protein_coding start - 3 216.0 0.0 3.12 0.0 72.2 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000047126 Cltc ENSMUST00000134999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002814 Top3a ENSMUST00000117743 ENSMUSP00000113057 TRANSLATION protein_coding - - 1 773.0 3.0 14.25 0.0 491.6 0.0 -4,-5 0.0621 3 8.7 MINOR ENSMUSG00000002814 Top3a ENSMUST00000124799 - NO_TRANSLATION retained_intron ENSMUSG00000002814 Top3a ENSMUST00000130068 ENSMUSP00000115727 TRANSLATION protein_coding stop - 3 85.0 1.0 2.5 0.0 23.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000002814 Top3a ENSMUST00000002891 ENSMUSP00000002891 TRANSLATION protein_coding - CCDS24797.1 1 1003.0 3.0 14.4 9.0 633.5 0.0 -4,0 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000002814 Top3a ENSMUST00000120417 ENSMUSP00000113653 TRANSLATION protein_coding - - 5 670.0 3.0 14.382 0.0 484.2 0.0 -4,-5 0.0547 2 8.964 MINOR ENSMUSG00000002814 Top3a ENSMUST00000102668 ENSMUSP00000099729 TRANSLATION protein_coding - - 1 954.0 3.0 14.4 0.0 633.5 0.0 -4,0 0.1461 4 15.0 MINOR ENSMUSG00000006127 Inpp5k ENSMUST00000149134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006127 Inpp5k ENSMUST00000006286 ENSMUSP00000006286 TRANSLATION protein_coding - CCDS25053.1 1 468.0 0.0 6.308 0.0 30.2 0.0 -4,-7 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000006127 Inpp5k ENSMUST00000150857 ENSMUSP00000119996 TRANSLATION nonsense_mediated_decay - - 1 39.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000006127 Inpp5k ENSMUST00000139856 ENSMUSP00000121060 TRANSLATION protein_coding start - 3 112.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006127 Inpp5k ENSMUST00000130318 - NO_TRANSLATION retained_intron ENSMUSG00000006127 Inpp5k ENSMUST00000129298 - NO_TRANSLATION retained_intron ENSMUSG00000006127 Inpp5k ENSMUST00000136605 - NO_TRANSLATION retained_intron ENSMUSG00000033352 Map2k4 ENSMUST00000140740 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033352 Map2k4 ENSMUST00000130009 ENSMUSP00000137819 TRANSLATION nonsense_mediated_decay - - 3 101.0 0.0 0.165 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033352 Map2k4 ENSMUST00000152096 ENSMUSP00000114219 TRANSLATION protein_coding stop - 2 206.0 15.0 3.665 0.0 50.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000033352 Map2k4 ENSMUST00000046963 ENSMUSP00000041282 TRANSLATION protein_coding - CCDS24844.1 1 397.0 20.0 8.58 0.1 204.4 0.0 -4,-5 0.9882 14 18.0 PRINCIPAL:1 ENSMUSG00000033352 Map2k4 ENSMUST00000125598 ENSMUSP00000137656 TRANSLATION protein_coding start - 5 130.0 6.0 3.5 0.0 93.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000033352 Map2k4 ENSMUST00000138093 ENSMUSP00000154113 TRANSLATION protein_coding stop - 3 34.0 2.0 1.25 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033352 Map2k4 ENSMUST00000140301 ENSMUSP00000137955 TRANSLATION nonsense_mediated_decay - - 3 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020917 Acly ENSMUST00000107385 ENSMUSP00000103008 TRANSLATION protein_coding - - 1 491.0 18.0 10.29 0.0 0.0 0.0 -4,-5 0.0 21 0.0 MINOR ENSMUSG00000020917 Acly ENSMUST00000154151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020917 Acly ENSMUST00000007131 ENSMUSP00000007131 TRANSLATION protein_coding - CCDS25425.1 1 1091.0 28.0 24.54 30.3 97.7 0.0 -4,-5 1.0 51 16.0 ALTERNATIVE:1 ENSMUSG00000020917 Acly ENSMUST00000165111 ENSMUSP00000127632 TRANSLATION protein_coding - CCDS25425.1 1 1091.0 28.0 24.54 30.3 97.7 0.0 -4,-5 1.0 51 16.0 ALTERNATIVE:1 ENSMUSG00000020917 Acly ENSMUST00000154888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020917 Acly ENSMUST00000107389 ENSMUSP00000103012 TRANSLATION protein_coding - CCDS56807.1 1 1101.0 28.0 24.54 23.8 97.7 0.0 -4,-5 0.9797 52 15.112 PRINCIPAL:3 ENSMUSG00000020917 Acly ENSMUST00000152969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020876 Snx11 ENSMUST00000132354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020876 Snx11 ENSMUST00000127375 ENSMUSP00000115789 TRANSLATION protein_coding stop - 5 197.0 0.0 3.75 0.0 92.6 0.0 -4,-5 0.0088 2 -2.0 MINOR ENSMUSG00000020876 Snx11 ENSMUST00000107661 ENSMUSP00000103288 TRANSLATION protein_coding - CCDS25302.1 1 271.0 0.0 3.75 7.6 92.6 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000020876 Snx11 ENSMUST00000125025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020876 Snx11 ENSMUST00000136799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020876 Snx11 ENSMUST00000021246 ENSMUSP00000021246 TRANSLATION protein_coding - CCDS25302.1 1 271.0 0.0 3.75 7.6 92.6 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000032782 Cntrob ENSMUST00000176111 - NO_TRANSLATION retained_intron ENSMUSG00000032782 Cntrob ENSMUST00000156175 - NO_TRANSLATION retained_intron ENSMUSG00000032782 Cntrob ENSMUST00000135979 ENSMUSP00000115422 TRANSLATION protein_coding start - 3 32.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0174 - -2.0 MINOR ENSMUSG00000032782 Cntrob ENSMUST00000125777 - NO_TRANSLATION retained_intron ENSMUSG00000032782 Cntrob ENSMUST00000156671 - NO_TRANSLATION retained_intron ENSMUSG00000032782 Cntrob ENSMUST00000123176 ENSMUSP00000122205 TRANSLATION nonsense_mediated_decay - - 1 152.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0161 1 -2.0 MINOR ENSMUSG00000032782 Cntrob ENSMUST00000176938 ENSMUSP00000135258 TRANSLATION protein_coding start - 2 51.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0121 - -2.0 MINOR ENSMUSG00000032782 Cntrob ENSMUST00000130780 ENSMUSP00000134842 TRANSLATION protein_coding start - 3 75.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.014 - -2.0 MINOR ENSMUSG00000032782 Cntrob ENSMUST00000092973 ENSMUSP00000090651 TRANSLATION protein_coding - CCDS24888.2 1 887.0 0.0 8.75 0.1 0.0 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000032782 Cntrob ENSMUST00000148490 - NO_TRANSLATION retained_intron ENSMUSG00000039321 Uts2r ENSMUST00000039044 ENSMUSP00000046920 TRANSLATION protein_coding - CCDS25769.1 - 385.0 0.0 1.0 3.3 144.9 0.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056564 Or2ab1 ENSMUST00000214990 ENSMUSP00000154189 TRANSLATION protein_coding - - 5 325.0 0.0 0.8 0.0 159.9 6.0 -4,-7 0.2574 - 8.0 ALTERNATIVE:2 ENSMUSG00000056564 Or2ab1 ENSMUST00000054683 ENSMUSP00000056457 TRANSLATION protein_coding - CCDS24735.1 - 333.0 0.0 0.8 0.0 159.9 6.0 -4,-7 0.7964 - 8.0 ALTERNATIVE:2 ENSMUSG00000056564 Or2ab1 ENSMUST00000216965 ENSMUSP00000154149 TRANSLATION protein_coding - - 5 331.0 0.0 0.8 0.0 159.9 6.0 -4,-7 0.8212 - 8.0 PRINCIPAL:4 ENSMUSG00000001323 Srr ENSMUST00000123855 ENSMUSP00000118485 TRANSLATION protein_coding stop - 5 166.0 7.0 4.0 0.0 126.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000001323 Srr ENSMUST00000127499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001323 Srr ENSMUST00000128556 ENSMUSP00000120012 TRANSLATION protein_coding stop - 5 182.0 7.0 4.66 0.0 141.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000001323 Srr ENSMUST00000065211 ENSMUSP00000067552 TRANSLATION protein_coding - CCDS25038.1 1 339.0 23.0 7.16 8.3 247.4 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000001323 Srr ENSMUST00000121738 ENSMUSP00000113372 TRANSLATION protein_coding - CCDS25038.1 1 339.0 23.0 7.16 8.3 247.4 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000001323 Srr ENSMUST00000108447 ENSMUSP00000104086 TRANSLATION protein_coding - - 5 314.0 16.0 6.33 0.3 197.2 0.0 -4,-5 0.0019 11 8.658 MINOR ENSMUSG00000001323 Srr ENSMUST00000135587 - NO_TRANSLATION retained_intron ENSMUSG00000001323 Srr ENSMUST00000138612 ENSMUSP00000119256 TRANSLATION protein_coding stop - 2 113.0 6.0 2.5 0.0 85.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000001323 Srr ENSMUST00000147817 - NO_TRANSLATION retained_intron ENSMUSG00000001323 Srr ENSMUST00000108448 ENSMUSP00000104087 TRANSLATION protein_coding - CCDS25038.1 5 339.0 23.0 7.16 8.3 247.4 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000020412 Ascc2 ENSMUST00000109930 ENSMUSP00000105556 TRANSLATION protein_coding - - 1 709.0 0.0 10.1 0.0 41.1 0.0 -4,-5 0.0384 7 12.0 MINOR ENSMUSG00000020412 Ascc2 ENSMUST00000070257 ENSMUSP00000063272 TRANSLATION protein_coding - CCDS24387.1 1 749.0 0.0 10.1 7.2 41.1 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000075528 Aarsd1 ENSMUST00000133240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075528 Aarsd1 ENSMUST00000189049 - NO_TRANSLATION retained_intron ENSMUSG00000075528 Aarsd1 ENSMUST00000125472 - NO_TRANSLATION retained_intron ENSMUSG00000075528 Aarsd1 ENSMUST00000140123 - NO_TRANSLATION retained_intron ENSMUSG00000075528 Aarsd1 ENSMUST00000070395 ENSMUSP00000067912 TRANSLATION protein_coding - CCDS25467.1 1 412.0 4.0 10.25 18.1 61.1 0.0 -4,-6 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000046634 Pkd1l1 ENSMUST00000155886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046634 Pkd1l1 ENSMUST00000154153 ENSMUSP00000120803 TRANSLATION protein_coding start - 5 2521.0 0.0 2.659 0.0 330.0 0.0 -4,-6 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000046634 Pkd1l1 ENSMUST00000178195 ENSMUSP00000136518 TRANSLATION protein_coding start - 5 2070.0 0.0 2.659 0.0 259.4 0.0 -4,-7 0.1655 - -2.0 ALTERNATIVE:2 ENSMUSG00000018678 Sp2 ENSMUST00000107623 ENSMUSP00000103249 TRANSLATION protein_coding - - 1 607.0 12.0 2.0 3.8 65.0 0.0 -4,-6 0.4266 5 19.023 MINOR ENSMUSG00000018678 Sp2 ENSMUST00000107624 ENSMUSP00000103250 TRANSLATION protein_coding - CCDS36291.1 1 613.0 12.0 2.0 9.2 65.0 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000018678 Sp2 ENSMUST00000062652 ENSMUSP00000051403 TRANSLATION protein_coding - - 1 607.0 12.0 2.0 3.8 65.0 0.0 -4,-6 0.4266 5 19.023 MINOR ENSMUSG00000040829 Zmynd15 ENSMUST00000126105 ENSMUSP00000134599 TRANSLATION protein_coding stop - 3 109.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000040829 Zmynd15 ENSMUST00000108563 ENSMUSP00000104203 TRANSLATION protein_coding - - 1 606.0 8.0 0.0 0.0 34.8 0.0 -4,-5 0.0477 - 12.0 MINOR ENSMUSG00000040829 Zmynd15 ENSMUST00000039093 ENSMUSP00000048816 TRANSLATION protein_coding - CCDS24949.1 1 736.0 8.0 0.0 5.9 34.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040829 Zmynd15 ENSMUST00000136029 - NO_TRANSLATION retained_intron ENSMUSG00000040829 Zmynd15 ENSMUST00000092958 ENSMUSP00000090635 TRANSLATION protein_coding - - 5 696.0 8.0 0.0 2.1 34.8 0.0 -4,-6 0.2515 - 12.448 MINOR ENSMUSG00000040829 Zmynd15 ENSMUST00000147289 ENSMUSP00000136813 TRANSLATION protein_coding stop - 3 66.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 - -2.0 MINOR ENSMUSG00000017692 Rhbdl3 ENSMUST00000157016 - NO_TRANSLATION retained_intron ENSMUSG00000017692 Rhbdl3 ENSMUST00000017836 ENSMUSP00000017836 TRANSLATION protein_coding - CCDS25131.1 1 404.0 4.0 5.715 0.4 114.3 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000017692 Rhbdl3 ENSMUST00000138846 - NO_TRANSLATION retained_intron ENSMUSG00000013653 1810065E05Rik ENSMUST00000013797 ENSMUSP00000013797 TRANSLATION protein_coding - CCDS24730.1 1 235.0 0.0 4.0 0.0 0.0 0.0 0,-3 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000018171 Vmp1 ENSMUST00000150176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018171 Vmp1 ENSMUST00000139040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018171 Vmp1 ENSMUST00000153971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018171 Vmp1 ENSMUST00000127267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018171 Vmp1 ENSMUST00000145846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018171 Vmp1 ENSMUST00000143991 ENSMUSP00000118302 TRANSLATION protein_coding stop - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000018171 Vmp1 ENSMUST00000018315 ENSMUSP00000018315 TRANSLATION protein_coding - CCDS25203.1 1 406.0 0.0 0.0 35.1 34.0 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000018171 Vmp1 ENSMUST00000123590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034297 Med13 ENSMUST00000136622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034297 Med13 ENSMUST00000140514 - NO_TRANSLATION retained_intron ENSMUSG00000034297 Med13 ENSMUST00000043624 ENSMUSP00000044268 TRANSLATION protein_coding - CCDS36267.1 2 2171.0 0.0 0.0 6.2 831.8 0.0 -4,-6 1.0 16 8.0 PRINCIPAL:1 ENSMUSG00000034297 Med13 ENSMUST00000144983 - NO_TRANSLATION retained_intron ENSMUSG00000020530 Ggnbp2 ENSMUST00000170741 ENSMUSP00000128109 TRANSLATION protein_coding stop - 3 141.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0113 1 -2.0 MINOR ENSMUSG00000020530 Ggnbp2 ENSMUST00000166425 ENSMUSP00000129794 TRANSLATION protein_coding stop - 3 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.011 1 -2.0 MINOR ENSMUSG00000020530 Ggnbp2 ENSMUST00000018547 ENSMUSP00000018547 TRANSLATION protein_coding - - 5 738.0 0.0 0.0 10.2 0.0 0.0 -4,-5 0.5433 6 1.728 MINOR ENSMUSG00000020530 Ggnbp2 ENSMUST00000132098 ENSMUSP00000129898 TRANSLATION protein_coding start - 3 122.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.011 1 -2.0 MINOR ENSMUSG00000020530 Ggnbp2 ENSMUST00000165459 - NO_TRANSLATION retained_intron ENSMUSG00000020530 Ggnbp2 ENSMUST00000168267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020530 Ggnbp2 ENSMUST00000100686 ENSMUSP00000098252 TRANSLATION protein_coding - - 5 676.0 0.0 0.0 2.2 0.0 0.0 -4,-5 0.2135 6 0.224 MINOR ENSMUSG00000020530 Ggnbp2 ENSMUST00000154915 ENSMUSP00000117482 TRANSLATION protein_coding - - 1 696.0 0.0 0.0 20.1 0.0 0.0 -4,-5 0.8638 6 3.588 ALTERNATIVE:1 ENSMUSG00000020530 Ggnbp2 ENSMUST00000167429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020530 Ggnbp2 ENSMUST00000168434 ENSMUSP00000130013 TRANSLATION protein_coding - - 5 696.0 0.0 0.0 20.1 0.0 0.0 -4,-5 0.8638 6 3.588 ALTERNATIVE:1 ENSMUSG00000020530 Ggnbp2 ENSMUST00000172405 ENSMUSP00000127584 TRANSLATION protein_coding - CCDS36262.1 1 698.0 0.0 0.0 22.3 0.0 0.0 -4,-5 1.0 6 4.0 PRINCIPAL:4 ENSMUSG00000020530 Ggnbp2 ENSMUST00000108081 ENSMUSP00000103716 TRANSLATION protein_coding - CCDS36262.1 5 698.0 0.0 0.0 22.3 0.0 0.0 -4,-5 1.0 6 4.0 PRINCIPAL:4 ENSMUSG00000020530 Ggnbp2 ENSMUST00000134043 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025573 6030468B19Rik ENSMUST00000106331 ENSMUSP00000101938 TRANSLATION protein_coding - CCDS48992.1 1 252.0 0.0 2.0 0.1 0.0 0.0 3,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000035413 Tmem98 ENSMUST00000040865 ENSMUSP00000042825 TRANSLATION protein_coding - CCDS25135.1 1 226.0 0.0 1.025 28.9 34.0 0.0 -1,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000050107 Haspin ENSMUST00000052140 ENSMUSP00000055806 TRANSLATION protein_coding - CCDS24997.1 - 754.0 19.0 0.8 0.1 0.0 0.0 -4,0 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000045915 Ccdc42 ENSMUST00000102612 ENSMUSP00000099672 TRANSLATION protein_coding - - 1 169.0 0.0 2.85 0.0 0.0 0.0 -4,-5 0.0 1 2.202 MINOR ENSMUSG00000045915 Ccdc42 ENSMUST00000154294 ENSMUSP00000114381 TRANSLATION protein_coding - CCDS24868.2 5 316.0 0.0 4.75 9.9 95.8 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000045915 Ccdc42 ENSMUST00000063006 ENSMUSP00000057342 TRANSLATION protein_coding - - 5 238.0 0.0 3.75 0.0 95.8 0.0 -4,-5 0.0018 1 10.002 MINOR ENSMUSG00000006777 Krt23 ENSMUST00000006969 ENSMUSP00000006969 TRANSLATION protein_coding - CCDS25382.1 1 422.0 0.0 3.15 10.3 280.5 0.0 -4,-2 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000020191 Spata48 ENSMUST00000170661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020191 Spata48 ENSMUST00000020410 ENSMUSP00000020410 TRANSLATION protein_coding - - 5 445.0 0.0 0.0 0.4 215.8 0.0 -4,-6 0.1473 2 2.0 ALTERNATIVE:2 ENSMUSG00000020191 Spata48 ENSMUST00000109678 ENSMUSP00000105300 TRANSLATION protein_coding - CCDS48752.1 1 149.0 0.0 0.0 0.1 215.8 0.0 -4,-1 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000063193 Cd300lb ENSMUST00000126655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063193 Cd300lb ENSMUST00000239005 ENSMUSP00000159146 TRANSLATION protein_coding - - - 209.0 0.0 2.6 0.1 56.7 3.0 3,-2 0.1666 - 8.0 ALTERNATIVE:2 ENSMUSG00000063193 Cd300lb ENSMUST00000149663 ENSMUSP00000144728 TRANSLATION protein_coding - CCDS83924.1 1 119.0 0.0 1.6 0.0 0.0 3.0 -4,-5 0.0272 - 3.69 MINOR ENSMUSG00000063193 Cd300lb ENSMUST00000106581 ENSMUSP00000102191 TRANSLATION protein_coding - CCDS25614.1 1 255.0 0.0 2.6 0.0 56.7 3.0 -4,-7 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000039307 Hexdc ENSMUST00000106117 ENSMUSP00000101723 TRANSLATION protein_coding - CCDS49013.1 1 486.0 2.0 6.75 9.3 38.1 0.0 -4,-7 1.0 2 16.874 PRINCIPAL:1 ENSMUSG00000039307 Hexdc ENSMUST00000131009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039307 Hexdc ENSMUST00000151495 ENSMUSP00000123073 TRANSLATION protein_coding start - 1 556.0 2.0 6.75 0.0 37.7 0.0 -4,-6 0.03 2 -2.0 MINOR ENSMUSG00000039307 Hexdc ENSMUST00000124925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039307 Hexdc ENSMUST00000128913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039307 Hexdc ENSMUST00000038831 ENSMUSP00000048479 TRANSLATION protein_coding - - 5 559.0 2.0 6.75 0.0 37.7 0.0 -4,-7 0.0326 2 13.814 MINOR ENSMUSG00000039307 Hexdc ENSMUST00000124761 ENSMUSP00000116406 TRANSLATION protein_coding start/stop - 5 351.0 2.0 5.35 0.0 38.9 0.0 -4,-5 0.0071 2 -2.0 MINOR ENSMUSG00000039307 Hexdc ENSMUST00000124768 ENSMUSP00000122008 TRANSLATION protein_coding stop - 5 152.0 2.0 3.5 0.0 30.1 0.0 -4,-7 0.0003 - -2.0 MINOR ENSMUSG00000020677 Ddx52 ENSMUST00000130982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020677 Ddx52 ENSMUST00000049257 ENSMUSP00000048802 TRANSLATION protein_coding - CCDS25180.1 1 598.0 18.0 8.075 8.0 230.9 0.0 -4,-6 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000057322 Rpl38 ENSMUST00000082092 ENSMUSP00000080741 TRANSLATION protein_coding - CCDS36365.1 2 70.0 0.0 2.08 30.9 128.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000057322 Rpl38 ENSMUST00000106602 ENSMUSP00000102213 TRANSLATION protein_coding - CCDS36365.1 1 70.0 0.0 2.08 30.9 128.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000057322 Rpl38 ENSMUST00000106599 ENSMUSP00000102209 TRANSLATION protein_coding - CCDS36365.1 1 70.0 0.0 2.08 30.9 128.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000057322 Rpl38 ENSMUST00000077915 ENSMUSP00000102211 TRANSLATION protein_coding - CCDS36365.1 1 70.0 0.0 2.08 30.9 128.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020946 Gosr2 ENSMUST00000021329 ENSMUSP00000021329 TRANSLATION protein_coding - CCDS25521.1 1 212.0 0.0 0.0 32.7 55.7 1.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000020946 Gosr2 ENSMUST00000107013 ENSMUSP00000102627 TRANSLATION protein_coding - - 2 165.0 0.0 0.0 18.2 0.0 1.0 -4,-5 0.425 4 2.172 MINOR ENSMUSG00000020946 Gosr2 ENSMUST00000145265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040471 Ggt6 ENSMUST00000108499 ENSMUSP00000104139 TRANSLATION protein_coding - - 1 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000040471 Ggt6 ENSMUST00000076443 ENSMUSP00000075773 TRANSLATION protein_coding - CCDS36216.1 1 497.0 0.0 1.198 4.2 90.4 1.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000040471 Ggt6 ENSMUST00000100903 ENSMUSP00000098463 TRANSLATION protein_coding - - 5 459.0 0.0 0.198 1.0 61.8 1.0 -4,-6 0.0447 4 5.094 MINOR ENSMUSG00000101874 Or2y1e ENSMUST00000215671 ENSMUSP00000150635 TRANSLATION protein_coding - CCDS24606.1 5 311.0 0.0 1.0 9.7 152.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101874 Or2y1e ENSMUST00000187509 ENSMUSP00000140343 TRANSLATION protein_coding - CCDS24606.1 - 311.0 0.0 1.0 9.7 152.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042569 Dhrs7b ENSMUST00000042281 ENSMUSP00000044924 TRANSLATION protein_coding - CCDS24800.1 1 323.0 28.0 6.0 9.9 179.1 2.0 -4,-7 0.9535 11 19.976 MINOR ENSMUSG00000042569 Dhrs7b ENSMUST00000108718 ENSMUSP00000104358 TRANSLATION protein_coding - - 1 308.0 28.0 6.0 19.0 179.1 2.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000020335 Zfp354b ENSMUST00000152296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020335 Zfp354b ENSMUST00000109124 ENSMUSP00000104752 TRANSLATION protein_coding - CCDS24641.1 1 601.0 52.0 0.8 0.4 374.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000020335 Zfp354b ENSMUST00000164280 ENSMUSP00000127671 TRANSLATION protein_coding - CCDS24641.1 1 601.0 52.0 0.8 0.4 374.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000094483 Purb ENSMUST00000179343 ENSMUSP00000136957 TRANSLATION protein_coding - CCDS24420.1 - 324.0 0.0 0.25 0.3 327.7 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000020461 Clhc1 ENSMUST00000123175 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020461 Clhc1 ENSMUST00000208530 ENSMUSP00000147007 TRANSLATION protein_coding - CCDS83787.1 1 585.0 0.0 1.066 9.4 99.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020461 Clhc1 ENSMUST00000131366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020461 Clhc1 ENSMUST00000020753 ENSMUSP00000020753 TRANSLATION protein_coding - CCDS48763.1 1 596.0 0.0 1.066 0.1 81.4 0.0 -4,-5 0.1948 - 10.914 MINOR ENSMUSG00000070390 Nlrp1b ENSMUST00000108516 ENSMUSP00000104156 TRANSLATION protein_coding - CCDS36210.1 1 1174.0 6.0 9.3 0.0 571.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000070390 Nlrp1b ENSMUST00000108515 ENSMUSP00000104155 TRANSLATION protein_coding - CCDS48839.1 1 1177.0 6.0 9.2 0.0 563.0 0.0 -4,-5 0.4743 - 13.802 ALTERNATIVE:2 ENSMUSG00000070390 Nlrp1b ENSMUST00000108514 ENSMUSP00000104154 TRANSLATION protein_coding - CCDS48839.1 5 1177.0 6.0 9.2 0.0 563.0 0.0 -4,-5 0.4743 - 13.802 ALTERNATIVE:2 ENSMUSG00000070390 Nlrp1b ENSMUST00000094046 ENSMUSP00000091588 TRANSLATION protein_coding - CCDS36210.1 5 1174.0 6.0 9.3 0.0 571.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000070390 Nlrp1b ENSMUST00000136493 ENSMUSP00000121155 TRANSLATION nonsense_mediated_decay - - 1 673.0 6.0 1.1 0.0 141.0 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000006057 Atp5mc1 ENSMUST00000107684 ENSMUSP00000103312 TRANSLATION protein_coding - CCDS25289.1 1 136.0 0.0 2.0 28.5 44.2 2.0 -3,0 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000006057 Atp5mc1 ENSMUST00000178611 ENSMUSP00000137633 TRANSLATION protein_coding - CCDS25289.1 1 136.0 0.0 2.0 28.5 44.2 2.0 -3,0 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000006057 Atp5mc1 ENSMUST00000107686 ENSMUSP00000103314 TRANSLATION protein_coding - CCDS25289.1 3 136.0 0.0 2.0 28.5 44.2 2.0 -3,0 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000006057 Atp5mc1 ENSMUST00000090541 ENSMUSP00000088029 TRANSLATION protein_coding - CCDS25289.1 1 136.0 0.0 2.0 28.5 44.2 2.0 -3,0 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057181 5730455P16Rik ENSMUST00000103225 ENSMUSP00000099515 TRANSLATION protein_coding - CCDS25132.1 1 393.0 2.0 0.0 6.0 665.8 0.0 -4,-5 1.0 10 10.0 PRINCIPAL:1 ENSMUSG00000057181 5730455P16Rik ENSMUST00000149614 - NO_TRANSLATION retained_intron ENSMUSG00000057181 5730455P16Rik ENSMUST00000134274 ENSMUSP00000120606 TRANSLATION protein_coding stop - 5 214.0 2.0 0.0 0.0 241.7 0.0 -2,2 0.0008 3 -2.0 MINOR ENSMUSG00000040904 Gm21988 ENSMUST00000176116 ENSMUSP00000135134 TRANSLATION nonsense_mediated_decay,RT - - 2 71.0 0.0 1.75 0.0 0.0 1.0 -4,-7 0.0107 - -2.0 ALTERNATIVE:2 ENSMUSG00000040904 Gm21988 ENSMUST00000176268 ENSMUSP00000135088 TRANSLATION nonsense_mediated_decay,RT - CCDS36204.1 5 98.0 0.0 2.5 28.0 0.0 2.0 -1,-5 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000033066 Gas7 ENSMUST00000147276 ENSMUSP00001091674 TRANSLATION protein_coding stop - 3 179.0 0.0 3.7 0.0 197.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000033066 Gas7 ENSMUST00020183803 ENSMUSP00001091663 TRANSLATION protein_coding - CCDS70210.1 - 412.0 0.0 9.95 10.9 249.8 0.0 -4,-5 0.5034 19 9.352 MINOR ENSMUSG00000033066 Gas7 ENSMUST00000151784 ENSMUSP00001091672 TRANSLATION nonsense_mediated_decay - - 5 95.0 0.0 1.45 0.0 49.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033066 Gas7 ENSMUST00000133367 - NO_TRANSLATION retained_intron ENSMUSG00000033066 Gas7 ENSMUST00000145496 - NO_TRANSLATION retained_intron ENSMUSG00000033066 Gas7 ENSMUST00000108682 ENSMUSP00000104322 TRANSLATION protein_coding - CCDS70210.1 1 412.0 0.0 9.95 10.9 249.8 0.0 -4,-5 0.5034 19 9.352 MINOR ENSMUSG00000033066 Gas7 ENSMUST00000041611 ENSMUSP00000038420 TRANSLATION protein_coding - CCDS70210.1 1 412.0 0.0 9.95 10.9 249.8 0.0 -4,-5 0.5034 19 9.352 MINOR ENSMUSG00000033066 Gas7 ENSMUST00000136796 ENSMUSP00000159284 TRANSLATION nonsense_mediated_decay - - 3 159.0 0.0 2.45 0.0 96.2 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000033066 Gas7 ENSMUST00000129801 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033066 Gas7 ENSMUST00000108680 ENSMUSP00000104320 TRANSLATION protein_coding - CCDS48821.1 1 416.0 0.0 9.95 12.1 249.8 0.0 -4,-5 0.6009 19 9.612 MINOR ENSMUSG00000033066 Gas7 ENSMUST00000108681 ENSMUSP00000104321 TRANSLATION protein_coding - - 5 476.0 0.0 10.95 19.4 296.5 0.0 -4,-1 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000033066 Gas7 ENSMUST00000140863 - NO_TRANSLATION retained_intron ENSMUSG00000050944 Efcab5 ENSMUST00000108400 ENSMUSP00000104037 TRANSLATION protein_coding - CCDS36232.1 5 1406.0 4.0 0.0 0.0 0.0 0.0 -4,-5 1.0 - 4.0 PRINCIPAL:1 ENSMUSG00000050944 Efcab5 ENSMUST00000130901 ENSMUSP00000118152 TRANSLATION protein_coding start - 1 982.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.1364 - -2.0 MINOR ENSMUSG00000050944 Efcab5 ENSMUST00000148985 - NO_TRANSLATION retained_intron ENSMUSG00000050944 Efcab5 ENSMUST00000155085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050944 Efcab5 ENSMUST00000151731 - NO_TRANSLATION retained_intron ENSMUSG00000020848 Doc2b ENSMUST00000021209 ENSMUSP00000021209 TRANSLATION protein_coding - CCDS25057.1 1 412.0 17.0 7.25 6.7 170.5 0.0 -4,-7 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000020717 Pecam1 ENSMUST00000106796 ENSMUSP00000102408 TRANSLATION protein_coding - CCDS79069.1 1 727.0 0.0 9.49 1.5 82.1 1.0 4,-1 1.0 20 13.0 PRINCIPAL:1 ENSMUSG00000020717 Pecam1 ENSMUST00000135481 - NO_TRANSLATION retained_intron ENSMUSG00000020717 Pecam1 ENSMUST00000184424 - NO_TRANSLATION retained_intron ENSMUSG00000020717 Pecam1 ENSMUST00000183610 ENSMUSP00000138959 TRANSLATION protein_coding - CCDS79068.1 1 626.0 0.0 8.49 0.0 82.1 1.0 4,-1 0.2338 16 10.002 MINOR ENSMUSG00000020717 Pecam1 ENSMUST00000103069 ENSMUSP00000099358 TRANSLATION protein_coding - CCDS25558.1 1 697.0 0.0 8.33 1.5 82.1 1.0 4,-1 0.4813 18 10.678 MINOR ENSMUSG00000020717 Pecam1 ENSMUST00000124958 ENSMUSP00000122414 TRANSLATION protein_coding stop - 5 317.0 0.0 4.0 0.0 0.0 0.0 -4,-5 0.0012 9 -2.0 MINOR ENSMUSG00000020717 Pecam1 ENSMUST00000080853 ENSMUSP00000079664 TRANSLATION protein_coding - CCDS25559.1 1 716.0 0.0 8.83 1.5 82.1 1.0 4,-1 0.6381 19 11.68 MINOR ENSMUSG00000020717 Pecam1 ENSMUST00000068021 ENSMUSP00000067111 TRANSLATION protein_coding - - 2 732.0 0.0 9.16 0.0 82.1 1.0 4,-1 0.3433 20 11.34 MINOR ENSMUSG00000052915 Msl1 ENSMUST00000141016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052915 Msl1 ENSMUST00000107485 ENSMUSP00000103109 TRANSLATION protein_coding - - 1 463.0 0.0 0.2 1.0 66.5 0.0 -4,-7 0.014 5 1.908 MINOR ENSMUSG00000052915 Msl1 ENSMUST00000037915 ENSMUSP00000042792 TRANSLATION protein_coding - CCDS25364.1 1 616.0 0.0 2.925 9.2 163.5 0.0 -4,-7 1.0 6 11.0 PRINCIPAL:3 ENSMUSG00000052915 Msl1 ENSMUST00000037930 ENSMUSP00000043328 TRANSLATION protein_coding - - 1 370.0 0.0 2.625 0.0 97.7 0.0 -4,-2 0.0002 1 5.882 MINOR ENSMUSG00000052915 Msl1 ENSMUST00000107487 ENSMUSP00000103111 TRANSLATION protein_coding - - 2 600.0 0.0 2.825 7.6 164.2 0.0 -4,-7 0.7559 5 10.211 ALTERNATIVE:1 ENSMUSG00000052915 Msl1 ENSMUST00000126969 ENSMUSP00000116598 TRANSLATION protein_coding start/stop - 3 147.0 0.0 1.225 0.0 47.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034247 Plekhm1 ENSMUST00000184350 ENSMUSP00000138878 TRANSLATION nonsense_mediated_decay start - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034247 Plekhm1 ENSMUST00000041272 ENSMUSP00000047327 TRANSLATION protein_coding - CCDS25518.1 1 1074.0 11.0 2.924 0.0 312.6 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000056598 Drc3 ENSMUST00000108723 ENSMUSP00000104363 TRANSLATION protein_coding - CCDS36172.1 1 523.0 0.0 11.75 13.4 29.6 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000056598 Drc3 ENSMUST00000070805 ENSMUSP00000065525 TRANSLATION protein_coding - - 1 208.0 0.0 4.198 0.0 29.6 0.0 -4,-5 0.0026 - 6.0 MINOR ENSMUSG00000056598 Drc3 ENSMUST00000128905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056598 Drc3 ENSMUST00000094140 ENSMUSP00000091691 TRANSLATION protein_coding - - 1 278.0 0.0 6.0 0.0 29.6 0.0 -4,-5 0.0051 1 6.0 MINOR ENSMUSG00000045671 Spred2 ENSMUST00000093298 ENSMUSP00000090987 TRANSLATION protein_coding - CCDS24454.1 1 410.0 0.0 2.33 13.6 132.2 1.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000045671 Spred2 ENSMUST00000093299 ENSMUSP00000090988 TRANSLATION protein_coding - - 5 437.0 0.0 1.58 0.0 125.5 1.0 -4,-5 0.0155 1 9.666 MINOR ENSMUSG00000045671 Spred2 ENSMUST00000123036 ENSMUSP00000115103 TRANSLATION protein_coding stop - 5 229.0 0.0 1.25 0.0 32.9 0.0 -3,-7 0.0001 - -2.0 MINOR ENSMUSG00000015837 Sqstm1 ENSMUST00000147846 - NO_TRANSLATION retained_intron ENSMUSG00000015837 Sqstm1 ENSMUST00000143379 ENSMUSP00000118662 TRANSLATION protein_coding - - 5 382.0 8.0 3.0 0.0 90.0 0.0 -4,-7 0.0011 4 9.012 MINOR ENSMUSG00000015837 Sqstm1 ENSMUST00000154805 - NO_TRANSLATION retained_intron ENSMUSG00000015837 Sqstm1 ENSMUST00000015981 ENSMUSP00000015981 TRANSLATION protein_coding - CCDS70176.1 1 404.0 8.0 4.33 1.1 210.7 0.0 -4,-7 0.1402 5 15.908 MINOR ENSMUSG00000015837 Sqstm1 ENSMUST00000102774 ENSMUSP00000099835 TRANSLATION protein_coding - CCDS24629.1 1 442.0 8.0 4.495 6.2 240.7 0.0 -4,-7 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000015837 Sqstm1 ENSMUST00000136936 ENSMUSP00000120442 TRANSLATION protein_coding start - 3 109.0 0.0 1.495 0.0 150.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000015837 Sqstm1 ENSMUST00000131214 - NO_TRANSLATION retained_intron ENSMUSG00000049680 Urgcp ENSMUST00000118076 ENSMUSP00000113589 TRANSLATION protein_coding - CCDS36105.1 1 883.0 11.0 0.0 5.6 0.0 0.0 -4,-5 1.0 12 8.0 PRINCIPAL:1 ENSMUSG00000049680 Urgcp ENSMUST00000093362 ENSMUSP00000091053 TRANSLATION protein_coding - CCDS36104.1 1 926.0 11.0 0.0 2.4 0.0 0.0 -4,-5 0.4798 12 6.608 MINOR ENSMUSG00000049680 Urgcp ENSMUST00000120306 ENSMUSP00000113060 TRANSLATION protein_coding - CCDS36105.1 1 883.0 11.0 0.0 5.6 0.0 0.0 -4,-5 1.0 12 8.0 PRINCIPAL:1 ENSMUSG00000049680 Urgcp ENSMUST00000140922 ENSMUSP00000120902 TRANSLATION protein_coding stop - 2 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0131 1 -2.0 MINOR ENSMUSG00000038700 Hoxb5 ENSMUST00000049272 ENSMUSP00000035423 TRANSLATION protein_coding - CCDS25296.1 1 269.0 0.0 1.0 15.6 76.5 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038700 Hoxb5 ENSMUST00000190470 - NO_TRANSLATION retained_intron ENSMUSG00000050541 Adra1b ENSMUST00000067258 ENSMUSP00000070200 TRANSLATION protein_coding - CCDS24562.1 1 515.0 0.0 0.6 9.2 266.1 7.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000050541 Adra1b ENSMUST00000124306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050541 Adra1b ENSMUST00000167574 ENSMUSP00000129200 TRANSLATION protein_coding - CCDS24562.1 1 515.0 0.0 0.6 9.2 266.1 7.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000050541 Adra1b ENSMUST00000139906 ENSMUSP00000123435 TRANSLATION protein_coding stop - 1 462.0 0.0 0.6 0.0 266.1 7.0 -4,-5 0.0997 2 -2.0 MINOR ENSMUSG00000063881 Or1e1c ENSMUST00000120401 ENSMUSP00000113236 TRANSLATION protein_coding - CCDS25007.1 2 317.0 0.0 1.0 1.8 197.3 4.0 -3,-5 0.7337 - 12.5 MINOR ENSMUSG00000063881 Or1e1c ENSMUST00000078952 ENSMUSP00000077977 TRANSLATION protein_coding - CCDS48844.1 2 320.0 0.0 1.0 4.2 197.3 4.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063881 Or1e1c ENSMUST00000170592 ENSMUSP00000126073 TRANSLATION protein_coding - CCDS25007.1 2 317.0 0.0 1.0 1.8 197.3 4.0 -3,-5 0.7337 - 12.5 MINOR ENSMUSG00000020844 Nxn ENSMUST00000021204 ENSMUSP00000021204 TRANSLATION protein_coding - CCDS25064.1 1 435.0 7.0 7.264 6.2 205.3 0.0 -4,-6 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000020844 Nxn ENSMUST00000131472 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036275 9530068E07Rik ENSMUST00000153855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036275 9530068E07Rik ENSMUST00000036952 ENSMUSP00000048441 TRANSLATION protein_coding - CCDS24672.1 1 259.0 0.0 0.0 0.1 0.0 1.0 -2,1 0.4053 2 0.0 ALTERNATIVE:2 ENSMUSG00000036275 9530068E07Rik ENSMUST00000136303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036275 9530068E07Rik ENSMUST00000109057 ENSMUSP00000104685 TRANSLATION protein_coding - - 1 251.0 0.0 0.0 0.0 0.0 1.0 -1,-5 0.5895 2 0.0 PRINCIPAL:4 ENSMUSG00000020866 Cacna1g ENSMUST00000152811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020866 Cacna1g ENSMUST00000100561 ENSMUSP00000098127 TRANSLATION protein_coding - CCDS25255.1 1 2295.0 0.0 19.1135 2.5 855.3 28.0 -4,-5 1.0 16 9.0 PRINCIPAL:4 ENSMUSG00000020866 Cacna1g ENSMUST00000107791 ENSMUSP00000103420 TRANSLATION protein_coding - - 5 2254.0 0.0 18.9935 2.5 857.7 28.0 -4,-5 0.7424 16 8.76 ALTERNATIVE:2 ENSMUSG00000020866 Cacna1g ENSMUST00000133000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020866 Cacna1g ENSMUST00000107786 ENSMUSP00000103415 TRANSLATION protein_coding - CCDS48884.1 1 2248.0 0.0 18.1635 1.4 823.7 25.0 -4,-5 0.4687 16 6.365 MINOR ENSMUSG00000020866 Cacna1g ENSMUST00000107785 ENSMUSP00000103414 TRANSLATION protein_coding - - 5 2176.0 0.0 18.9935 0.7 857.7 28.0 -4,-5 0.3777 14 7.76 MINOR ENSMUSG00000020866 Cacna1g ENSMUST00000021234 ENSMUSP00000021234 TRANSLATION protein_coding - CCDS48885.1 5 2272.0 0.0 18.9935 1.4 857.7 28.0 -4,-5 0.7095 16 8.027 ALTERNATIVE:2 ENSMUSG00000020866 Cacna1g ENSMUST00000107792 ENSMUSP00000103421 TRANSLATION protein_coding - - 5 2247.0 0.0 18.6635 2.5 857.7 28.0 -4,-5 0.7112 16 8.1 ALTERNATIVE:2 ENSMUSG00000020866 Cacna1g ENSMUST00000107789 ENSMUSP00000103418 TRANSLATION protein_coding - - 5 2381.0 0.0 18.7835 2.5 855.3 28.0 -4,-5 0.622 16 8.34 ALTERNATIVE:2 ENSMUSG00000020866 Cacna1g ENSMUST00000107788 ENSMUSP00000103417 TRANSLATION protein_coding - - 5 2270.0 0.0 18.7835 2.5 855.3 28.0 -4,-5 0.7076 16 8.34 ALTERNATIVE:2 ENSMUSG00000020866 Cacna1g ENSMUST00000142190 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020866 Cacna1g ENSMUST00000107793 ENSMUSP00000103422 TRANSLATION protein_coding - - 5 2277.0 0.0 19.1135 2.5 855.3 28.0 -4,-5 0.7293 16 9.0 ALTERNATIVE:2 ENSMUSG00000020866 Cacna1g ENSMUST00000103166 ENSMUSP00000099455 TRANSLATION protein_coding - - 5 2288.0 0.0 18.7835 2.5 855.3 28.0 -4,-5 0.7489 16 8.34 ALTERNATIVE:2 ENSMUSG00000020866 Cacna1g ENSMUST00000107790 ENSMUSP00000103419 TRANSLATION protein_coding - CCDS48886.1 1 2265.0 0.0 18.6635 2.5 857.7 28.0 -4,-5 0.8767 16 8.1 ALTERNATIVE:2 ENSMUSG00000020866 Cacna1g ENSMUST00000133331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020866 Cacna1g ENSMUST00000146160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017715 Pgs1 ENSMUST00000017859 ENSMUSP00000017859 TRANSLATION nonsense_mediated_decay start - 1 476.0 0.0 0.196 0.0 0.0 0.0 -1,1 0.047 6 -2.0 MINOR ENSMUSG00000017715 Pgs1 ENSMUST00000132676 ENSMUSP00000121973 TRANSLATION protein_coding - CCDS25698.1 1 553.0 0.0 0.496 4.4 0.0 0.0 0,1 1.0 8 8.0 PRINCIPAL:1 ENSMUSG00000017715 Pgs1 ENSMUST00000155507 - NO_TRANSLATION retained_intron ENSMUSG00000017715 Pgs1 ENSMUST00000100185 ENSMUSP00000097760 TRANSLATION nonsense_mediated_decay - - 1 347.0 0.0 0.246 0.0 0.0 0.0 -4,-5 0.0228 5 -2.0 MINOR ENSMUSG00000034120 Srsf2 ENSMUST00000138484 - NO_TRANSLATION retained_intron ENSMUSG00000034120 Srsf2 ENSMUST00000190993 ENSMUSP00000140016 TRANSLATION protein_coding - CCDS25680.1 2 221.0 0.0 1.0 14.1 77.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000034120 Srsf2 ENSMUST00000177429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034120 Srsf2 ENSMUST00000092404 ENSMUSP00000090059 TRANSLATION protein_coding - CCDS25680.1 1 221.0 0.0 1.0 14.1 77.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000034120 Srsf2 ENSMUST00000136914 ENSMUSP00000120086 TRANSLATION nonsense_mediated_decay - CCDS25680.1 2 221.0 0.0 1.0 14.1 77.7 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000034120 Srsf2 ENSMUST00000176834 ENSMUSP00000134907 TRANSLATION nonsense_mediated_decay start - 3 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034641 Cd300ld ENSMUST00000045075 ENSMUSP00000047022 TRANSLATION protein_coding - CCDS25615.1 1 221.0 0.0 1.2 0.0 66.3 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000110170 St6galnac2 ENSMUST00000144398 ENSMUSP00000147566 TRANSLATION protein_coding - - 1 289.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.4695 7 0.0 PRINCIPAL:1 ENSMUSG00000010342 Tex14 ENSMUST00000100657 ENSMUSP00000098222 TRANSLATION protein_coding start - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010342 Tex14 ENSMUST00000060835 ENSMUSP00000054444 TRANSLATION protein_coding - CCDS48877.1 5 1450.0 0.0 5.22 0.4 127.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000010342 Tex14 ENSMUST00000124255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010342 Tex14 ENSMUST00000156483 ENSMUSP00000118114 TRANSLATION protein_coding stop - 1 118.0 0.0 2.1 0.0 34.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000010342 Tex14 ENSMUST00000131973 ENSMUSP00000117564 TRANSLATION protein_coding start/stop - 3 200.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020544 Cox11 ENSMUST00000020851 ENSMUSP00000020851 TRANSLATION protein_coding - CCDS25243.1 1 275.0 0.0 2.4 8.2 210.7 0.0 -4,0 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020544 Cox11 ENSMUST00000099960 ENSMUSP00000097543 TRANSLATION protein_coding - - 2 135.0 0.0 2.4 0.0 185.4 0.0 -4,-5 0.0719 2 10.482 MINOR ENSMUSG00000064057 Scgb3a1 ENSMUST00000076006 ENSMUSP00000075387 TRANSLATION protein_coding - CCDS36145.1 1 94.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.125 1 0.0 MINOR ENSMUSG00000064057 Scgb3a1 ENSMUST00000043873 ENSMUSP00000043325 TRANSLATION protein_coding - CCDS24619.1 1 104.0 0.0 0.0 5.1 0.0 0.0 2,-2 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000034714 Ttyh2 ENSMUST00000141111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034714 Ttyh2 ENSMUST00000045779 ENSMUSP00000037821 TRANSLATION protein_coding - CCDS25608.1 1 532.0 0.0 0.0 16.8 603.8 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000047253 Krtap1-5 ENSMUST00000054532 ENSMUSP00000053312 TRANSLATION protein_coding - CCDS25388.1 - 122.0 0.0 0.0 0.0 135.6 0.0 -3,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000017314 Mpp2 ENSMUST00000127522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017314 Mpp2 ENSMUST00000147126 - NO_TRANSLATION retained_intron ENSMUSG00000017314 Mpp2 ENSMUST00000100398 ENSMUSP00000097967 TRANSLATION protein_coding - - 1 569.0 20.0 5.3035 15.5 332.2 0.0 -4,-5 0.7344 22 20.276 MINOR ENSMUSG00000017314 Mpp2 ENSMUST00000017458 ENSMUSP00000017458 TRANSLATION protein_coding - CCDS25485.1 1 552.0 20.0 5.3035 26.5 332.2 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000017314 Mpp2 ENSMUST00000132687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017314 Mpp2 ENSMUST00000130903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034579 Pla2g3 ENSMUST00000151860 - NO_TRANSLATION retained_intron ENSMUSG00000034579 Pla2g3 ENSMUST00000044682 ENSMUSP00000041571 TRANSLATION nonsense_mediated_decay - - 2 446.0 3.0 1.8 0.0 145.2 0.0 2,-1 0.1789 - -2.0 MINOR ENSMUSG00000034579 Pla2g3 ENSMUST00000064265 ENSMUSP00000068699 TRANSLATION protein_coding - CCDS48740.1 1 504.0 3.0 1.8 0.1 145.2 0.0 2,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000005949 Ctns ENSMUST00000108476 ENSMUSP00000104116 TRANSLATION protein_coding - CCDS25001.1 1 367.0 0.0 8.5 6.6 130.7 6.0 2,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000005949 Ctns ENSMUST00000150468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005949 Ctns ENSMUST00000144658 - NO_TRANSLATION retained_intron ENSMUSG00000005949 Ctns ENSMUST00000130101 - NO_TRANSLATION retained_intron ENSMUSG00000005949 Ctns ENSMUST00000006103 ENSMUSP00000006103 TRANSLATION protein_coding - CCDS25001.1 1 367.0 0.0 8.5 6.6 130.7 6.0 2,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020704 Asic2 ENSMUST00000066197 ENSMUSP00000067095 TRANSLATION protein_coding - CCDS36243.1 1 512.0 0.0 8.0 13.2 357.2 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000020704 Asic2 ENSMUST00000021045 ENSMUSP00000021045 TRANSLATION protein_coding - CCDS25137.1 1 563.0 0.0 7.5 6.8 336.8 0.0 -4,0 0.4174 5 11.674 MINOR ENSMUSG00000034664 Itga2b ENSMUST00000103086 ENSMUSP00000099375 TRANSLATION protein_coding - CCDS25500.1 1 1033.0 27.0 21.9 1.0 431.3 0.0 2,-1 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000034664 Itga2b ENSMUST00000149519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034664 Itga2b ENSMUST00000151625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034664 Itga2b ENSMUST00000128752 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034664 Itga2b ENSMUST00000131247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034664 Itga2b ENSMUST00000130757 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034664 Itga2b ENSMUST00000134735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034664 Itga2b ENSMUST00000130433 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034664 Itga2b ENSMUST00000145925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034664 Itga2b ENSMUST00000124767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020865 Abcc3 ENSMUST00000151124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020865 Abcc3 ENSMUST00000140985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020865 Abcc3 ENSMUST00000178136 ENSMUSP00000136343 TRANSLATION protein_coding - - 1 1523.0 22.0 18.96 5.0 439.2 12.0 -4,-7 0.9568 19 20.0 PRINCIPAL:1 ENSMUSG00000020865 Abcc3 ENSMUST00000021231 ENSMUSP00000021231 TRANSLATION protein_coding - CCDS25254.1 1 1522.0 22.0 17.96 3.9 439.2 12.0 -4,-7 1.0 19 17.452 MINOR ENSMUSG00000020865 Abcc3 ENSMUST00000155253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020865 Abcc3 ENSMUST00000126566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041623 D11Wsu47e ENSMUST00000123466 ENSMUSP00000117685 TRANSLATION protein_coding stop - 3 144.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0182 4 -2.0 MINOR ENSMUSG00000041623 D11Wsu47e ENSMUST00000106621 ENSMUSP00000102232 TRANSLATION protein_coding - CCDS48976.1 1 558.0 4.0 0.0 0.0 0.0 1.0 -4,-6 0.8608 6 4.0 PRINCIPAL:1 ENSMUSG00000041623 D11Wsu47e ENSMUST00000042227 ENSMUSP00000042025 TRANSLATION protein_coding - CCDS48976.1 1 558.0 4.0 0.0 0.0 0.0 1.0 -4,-6 0.8608 6 4.0 PRINCIPAL:1 ENSMUSG00000041623 D11Wsu47e ENSMUST00000153732 ENSMUSP00000116817 TRANSLATION protein_coding stop - 2 116.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0177 2 -2.0 MINOR ENSMUSG00000069722 Krtap3-3 ENSMUST00000092700 ENSMUSP00000090374 TRANSLATION protein_coding - CCDS25385.1 - 99.0 0.0 0.0 11.0 158.9 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000057674 Gm11938 ENSMUST00000072306 ENSMUSP00000072150 TRANSLATION protein_coding - CCDS48909.1 - 131.0 0.0 0.0 6.9 38.2 0.0 -3,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000039963 Ccdc40 ENSMUST00000125724 - NO_TRANSLATION retained_intron ENSMUSG00000039963 Ccdc40 ENSMUST00000143066 - NO_TRANSLATION retained_intron ENSMUSG00000039963 Ccdc40 ENSMUST00000126652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039963 Ccdc40 ENSMUST00000236813 ENSMUSP00000158069 TRANSLATION protein_coding - - - 1262.0 0.0 0.0 0.0 75.8 0.0 -4,-5 0.3463 12 2.0 ALTERNATIVE:2 ENSMUSG00000039963 Ccdc40 ENSMUST00000235971 ENSMUSP00000158198 TRANSLATION nonsense_mediated_decay - - - 47.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039963 Ccdc40 ENSMUST00000155683 - NO_TRANSLATION retained_intron ENSMUSG00000039963 Ccdc40 ENSMUST00000053440 ENSMUSP00000062198 TRANSLATION protein_coding - - 1 1137.0 0.0 0.0 0.0 75.8 0.0 -4,-5 0.8768 11 2.0 PRINCIPAL:2 ENSMUSG00000039963 Ccdc40 ENSMUST00000133788 - NO_TRANSLATION retained_intron ENSMUSG00000049354 Dcaf7 ENSMUST00000106891 - NO_TRANSLATION retained_intron ENSMUSG00000049354 Dcaf7 ENSMUST00000058438 ENSMUSP00000058168 TRANSLATION protein_coding - CCDS25546.1 1 342.0 0.0 2.406 36.9 15.0 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000107417 Or2y13 ENSMUST00000077143 ENSMUSP00000076390 TRANSLATION protein_coding - CCDS24614.1 - 311.0 0.0 1.0 7.5 151.1 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000107417 Or2y13 ENSMUST00000204706 ENSMUSP00000145258 TRANSLATION protein_coding - CCDS24614.1 3 311.0 0.0 1.0 7.5 151.1 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000001901 Kcnh6 ENSMUST00000106903 ENSMUSP00000102516 TRANSLATION protein_coding - - 5 897.0 0.0 7.799 2.1 187.0 6.0 -4,-7 0.1039 - 7.37 MINOR ENSMUSG00000001901 Kcnh6 ENSMUST00000001965 ENSMUSP00000001965 TRANSLATION protein_coding - CCDS25545.1 1 950.0 0.0 8.599 6.0 244.8 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000001901 Kcnh6 ENSMUST00000145539 ENSMUSP00000137675 TRANSLATION nonsense_mediated_decay - - 1 775.0 0.0 8.5 0.0 244.8 7.0 -4,-7 0.0902 - -2.0 MINOR ENSMUSG00000001901 Kcnh6 ENSMUST00000140695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018669 Cdk5rap3 ENSMUST00000156315 ENSMUSP00000123113 TRANSLATION protein_coding stop - 3 140.0 0.0 0.0 0.0 230.4 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000018669 Cdk5rap3 ENSMUST00000144731 ENSMUSP00000114724 TRANSLATION protein_coding stop - 5 124.0 0.0 0.0 0.0 200.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000018669 Cdk5rap3 ENSMUST00000154289 - NO_TRANSLATION retained_intron ENSMUSG00000018669 Cdk5rap3 ENSMUST00000127048 ENSMUSP00000114849 TRANSLATION protein_coding stop - 2 145.0 0.0 0.0 0.0 233.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000018669 Cdk5rap3 ENSMUST00000130774 ENSMUSP00000114661 TRANSLATION protein_coding stop - 5 80.0 0.0 0.0 0.0 137.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000018669 Cdk5rap3 ENSMUST00000134732 ENSMUSP00000120258 TRANSLATION nonsense_mediated_decay - - 1 112.0 0.0 0.0 0.0 156.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018669 Cdk5rap3 ENSMUST00000130767 - NO_TRANSLATION retained_intron ENSMUSG00000018669 Cdk5rap3 ENSMUST00000149033 - NO_TRANSLATION retained_intron ENSMUSG00000018669 Cdk5rap3 ENSMUST00000153305 ENSMUSP00000116405 TRANSLATION nonsense_mediated_decay - - 3 142.0 0.0 0.0 0.0 191.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000018669 Cdk5rap3 ENSMUST00000103152 ENSMUSP00000099441 TRANSLATION protein_coding - CCDS25306.1 1 503.0 0.0 0.0 22.0 636.1 0.0 -4,-5 1.0 13 10.0 PRINCIPAL:1 ENSMUSG00000018669 Cdk5rap3 ENSMUST00000147573 ENSMUSP00000118320 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020890 Gucy2e ENSMUST00000108664 ENSMUSP00000104304 TRANSLATION protein_coding - CCDS24887.1 5 1108.0 0.0 6.19 1.8 479.9 1.0 -1,1 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000020890 Gucy2e ENSMUST00000021259 ENSMUSP00000021259 TRANSLATION protein_coding - CCDS24887.1 5 1108.0 0.0 6.19 1.8 479.9 1.0 -1,1 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000020890 Gucy2e ENSMUST00000155457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020890 Gucy2e ENSMUST00000108665 ENSMUSP00000104305 TRANSLATION protein_coding - CCDS24887.1 5 1108.0 0.0 6.19 1.8 479.9 1.0 -1,1 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000018572 Phf23 ENSMUST00000138186 ENSMUSP00000117635 TRANSLATION protein_coding stop - 3 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 4 -2.0 MINOR ENSMUSG00000018572 Phf23 ENSMUST00000018716 ENSMUSP00000018716 TRANSLATION protein_coding - CCDS24929.1 1 401.0 8.0 1.0 8.0 31.2 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000018572 Phf23 ENSMUST00000123817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018572 Phf23 ENSMUST00000135814 ENSMUSP00000120665 TRANSLATION protein_coding - CCDS78976.1 1 271.0 8.0 1.0 3.8 31.2 0.0 -4,-5 0.5845 3 19.2 MINOR ENSMUSG00000018572 Phf23 ENSMUST00000141231 - NO_TRANSLATION retained_intron ENSMUSG00000018572 Phf23 ENSMUST00000153684 ENSMUSP00000121780 TRANSLATION protein_coding - CCDS78976.1 1 271.0 8.0 1.0 3.8 31.2 0.0 -4,-5 0.5845 3 19.2 MINOR ENSMUSG00000018572 Phf23 ENSMUST00000146789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018572 Phf23 ENSMUST00000101526 ENSMUSP00000099064 TRANSLATION protein_coding - CCDS70223.1 1 334.0 8.0 1.0 3.0 31.2 0.0 -4,-5 0.4222 3 18.858 MINOR ENSMUSG00000018572 Phf23 ENSMUST00000133485 ENSMUSP00000117373 TRANSLATION protein_coding - CCDS78976.1 5 271.0 8.0 1.0 3.8 31.2 0.0 -4,-5 0.5845 3 19.2 MINOR ENSMUSG00000036860 Mrpl55 ENSMUST00000108787 ENSMUSP00000104415 TRANSLATION protein_coding - CCDS78955.1 2 134.0 0.0 2.0 0.4 192.0 0.0 -1,2 0.3373 1 8.0 ALTERNATIVE:2 ENSMUSG00000036860 Mrpl55 ENSMUST00000108786 ENSMUSP00000104414 TRANSLATION protein_coding - CCDS78955.1 2 134.0 0.0 2.0 0.4 192.0 0.0 -1,2 0.3373 1 8.0 ALTERNATIVE:2 ENSMUSG00000036860 Mrpl55 ENSMUST00000108784 ENSMUSP00000104412 TRANSLATION protein_coding - CCDS78955.1 1 134.0 0.0 2.0 0.4 192.0 0.0 -1,2 0.3373 1 8.0 ALTERNATIVE:2 ENSMUSG00000036860 Mrpl55 ENSMUST00000108785 ENSMUSP00000104413 TRANSLATION protein_coding - CCDS24763.1 1 127.0 0.0 2.0 0.0 192.0 0.0 2,2 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000036860 Mrpl55 ENSMUST00000045697 ENSMUSP00000048814 TRANSLATION protein_coding - CCDS24763.1 1 127.0 0.0 2.0 0.0 192.0 0.0 2,2 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000063386 Or2y15 ENSMUST00000073824 ENSMUSP00000073494 TRANSLATION protein_coding - CCDS24610.1 - 311.0 0.0 1.0 9.3 167.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063386 Or2y15 ENSMUST00000214541 ENSMUSP00000151105 TRANSLATION protein_coding - CCDS24610.1 5 311.0 0.0 1.0 9.3 167.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000017548 Suz12 ENSMUST00000163272 ENSMUSP00000126932 TRANSLATION protein_coding - CCDS48860.1 5 718.0 4.0 4.9795 0.0 181.3 0.0 -4,-5 0.2285 9 14.5 MINOR ENSMUSG00000017548 Suz12 ENSMUST00000144188 ENSMUSP00000128945 TRANSLATION nonsense_mediated_decay start - 3 51.0 4.0 1.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000017548 Suz12 ENSMUST00000148140 - NO_TRANSLATION retained_intron ENSMUSG00000017548 Suz12 ENSMUST00000017692 ENSMUSP00000017692 TRANSLATION protein_coding - CCDS25125.1 1 741.0 4.0 5.7295 0.0 181.3 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000017548 Suz12 ENSMUST00000132312 - NO_TRANSLATION retained_intron ENSMUSG00000017548 Suz12 ENSMUST00000126091 ENSMUSP00000129070 TRANSLATION nonsense_mediated_decay start - 5 59.0 0.0 1.08 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034209 Rasl10a ENSMUST00000126974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034209 Rasl10a ENSMUST00000037218 ENSMUSP00000048453 TRANSLATION protein_coding - CCDS24394.1 1 203.0 15.0 2.2 12.8 69.0 0.0 -4,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000036819 Jmjd4 ENSMUST00000126158 - NO_TRANSLATION retained_intron ENSMUSG00000036819 Jmjd4 ENSMUST00000147163 ENSMUSP00000123531 TRANSLATION nonsense_mediated_decay - - 1 200.0 4.0 0.765 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000036819 Jmjd4 ENSMUST00000108777 ENSMUSP00000104407 TRANSLATION protein_coding - CCDS24768.1 1 427.0 10.0 2.943 5.3 70.0 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000036819 Jmjd4 ENSMUST00000045279 ENSMUSP00000043473 TRANSLATION protein_coding - CCDS56777.1 1 415.0 10.0 2.543 3.2 49.1 0.0 -4,-6 0.3375 2 16.414 MINOR ENSMUSG00000020900 Myh10 ENSMUST00000141558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020900 Myh10 ENSMUST00000155765 - NO_TRANSLATION retained_intron ENSMUSG00000020900 Myh10 ENSMUST00000018887 ENSMUSP00000018887 TRANSLATION protein_coding - - 5 2007.0 16.0 31.367 13.9 2790.7 0.0 -4,-5 0.7846 75 19.916 MINOR ENSMUSG00000020900 Myh10 ENSMUST00000145408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020900 Myh10 ENSMUST00000092984 ENSMUSP00000090661 TRANSLATION protein_coding - - 1 2013.0 16.0 31.61 0.0 2797.4 0.0 -4,-7 0.3383 74 18.0 MINOR ENSMUSG00000020900 Myh10 ENSMUST00000143032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020900 Myh10 ENSMUST00000108673 ENSMUSP00000104313 TRANSLATION protein_coding - - 1 231.0 13.0 3.462 0.0 252.2 0.0 -4,-5 0.0 11 4.002 MINOR ENSMUSG00000020900 Myh10 ENSMUST00000124006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020900 Myh10 ENSMUST00000102611 ENSMUSP00000099671 TRANSLATION protein_coding - CCDS24869.1 1 1976.0 16.0 31.61 19.4 2797.4 0.0 -4,-5 1.0 74 22.0 PRINCIPAL:1 ENSMUSG00000020900 Myh10 ENSMUST00000139059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013418 B4galnt2 ENSMUST00000038343 ENSMUSP00000037239 TRANSLATION protein_coding - CCDS25285.1 1 510.0 15.0 8.75 1.3 64.6 0.0 -1,-6 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000069899 Sft2d1rt ENSMUST00000093169 ENSMUSP00000090857 TRANSLATION protein_coding - - - 159.0 0.0 0.8 34.7 130.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000069899 Sft2d1rt ENSMUST00000154156 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020904 Cfap52 ENSMUST00000142929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020904 Cfap52 ENSMUST00000021287 ENSMUSP00000021287 TRANSLATION protein_coding - CCDS24862.1 1 620.0 0.0 13.75 12.6 80.8 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000020904 Cfap52 ENSMUST00000123900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020904 Cfap52 ENSMUST00000126766 ENSMUSP00000116496 TRANSLATION protein_coding - - 1 342.0 0.0 7.75 0.0 34.4 0.0 -4,-5 0.0 9 2.556 MINOR ENSMUSG00000034768 Asb16 ENSMUST00000036467 ENSMUSP00000038450 TRANSLATION protein_coding - CCDS25493.1 1 453.0 0.0 3.6 9.5 123.3 0.0 -4,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020926 Adam11 ENSMUST00000068150 ENSMUSP00000069466 TRANSLATION protein_coding - CCDS48946.1 1 778.0 17.0 12.6 5.4 491.4 1.0 3,-4 0.9449 13 15.572 ALTERNATIVE:1 ENSMUSG00000020926 Adam11 ENSMUST00000124879 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020926 Adam11 ENSMUST00000143269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020926 Adam11 ENSMUST00000142912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020926 Adam11 ENSMUST00000103081 ENSMUSP00000099370 TRANSLATION protein_coding - CCDS25503.1 1 773.0 17.0 12.6 6.6 491.4 1.0 3,-4 1.0 13 16.0 PRINCIPAL:4 ENSMUSG00000020926 Adam11 ENSMUST00000126024 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020926 Adam11 ENSMUST00000135513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020926 Adam11 ENSMUST00000141563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020926 Adam11 ENSMUST00000134296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069808 Tlcd3a ENSMUST00000094014 ENSMUSP00000091553 TRANSLATION protein_coding - CCDS36230.1 1 257.0 0.0 5.25 15.8 142.5 6.0 0,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000069808 Tlcd3a ENSMUST00000169560 ENSMUSP00000131151 TRANSLATION protein_coding - - 5 225.0 0.0 4.25 2.2 57.6 4.0 0,-4 0.0437 - 5.232 MINOR ENSMUSG00000069808 Tlcd3a ENSMUST00000129853 ENSMUSP00000114936 TRANSLATION protein_coding stop - 2 173.0 0.0 3.0 1.0 110.4 5.0 -4,-7 0.0162 - -2.0 MINOR ENSMUSG00000069808 Tlcd3a ENSMUST00000130527 - NO_TRANSLATION retained_intron ENSMUSG00000069808 Tlcd3a ENSMUST00000127340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020787 P2rx1 ENSMUST00000021141 ENSMUSP00000021141 TRANSLATION protein_coding - CCDS24992.1 1 399.0 0.0 9.105 10.3 516.3 2.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020787 P2rx1 ENSMUST00000148964 - NO_TRANSLATION retained_intron ENSMUSG00000020787 P2rx1 ENSMUST00000092938 ENSMUSP00000090614 TRANSLATION protein_coding - - 5 372.0 0.0 8.355 1.2 237.4 2.0 -4,-6 0.0573 3 4.566 MINOR ENSMUSG00000049299 Trappc1 ENSMUST00000140555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049299 Trappc1 ENSMUST00000060956 ENSMUSP00000050153 TRANSLATION protein_coding - - 3 165.0 0.0 3.08 0.0 102.4 0.0 -4,-5 0.0 6 6.828 MINOR ENSMUSG00000049299 Trappc1 ENSMUST00000102602 ENSMUSP00000099662 TRANSLATION protein_coding - CCDS24889.1 2 145.0 0.0 4.08 32.6 155.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000049299 Trappc1 ENSMUST00000108662 ENSMUSP00000104302 TRANSLATION protein_coding - - 2 135.0 0.0 3.75 0.0 131.6 0.0 -4,-5 0.001 5 9.918 MINOR ENSMUSG00000049299 Trappc1 ENSMUST00000102601 ENSMUSP00000099661 TRANSLATION protein_coding - CCDS24889.1 1 145.0 0.0 4.08 32.6 155.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000010122 Slc47a1 ENSMUST00000147583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010122 Slc47a1 ENSMUST00000010267 ENSMUSP00000010267 TRANSLATION protein_coding - CCDS24811.2 2 567.0 0.0 8.05 4.9 0.0 17.0 -4,-6 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000010122 Slc47a1 ENSMUST00000131723 ENSMUSP00000115132 TRANSLATION nonsense_mediated_decay - - 2 184.0 0.0 2.55 0.0 0.0 7.0 -4,-6 0.0139 - -2.0 MINOR ENSMUSG00000010122 Slc47a1 ENSMUST00000148671 ENSMUSP00000118265 TRANSLATION protein_coding stop - 5 214.0 0.0 3.65 0.0 0.0 9.0 -1,-5 0.0344 - -2.0 MINOR ENSMUSG00000020424 Castor1 ENSMUST00000020699 ENSMUSP00000020699 TRANSLATION protein_coding - CCDS24381.1 1 331.0 0.0 7.58 19.3 121.8 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000018167 Stard3 ENSMUST00000155063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018167 Stard3 ENSMUST00000143243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018167 Stard3 ENSMUST00000148738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018167 Stard3 ENSMUST00000152559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018167 Stard3 ENSMUST00000154960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018167 Stard3 ENSMUST00000130323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018167 Stard3 ENSMUST00000018311 ENSMUSP00000018311 TRANSLATION protein_coding - CCDS25345.1 1 446.0 0.0 8.25 18.5 390.9 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000044894 Uqcrq ENSMUST00000109019 ENSMUSP00000104647 TRANSLATION protein_coding - - 2 37.0 0.0 1.165 0.0 32.9 0.0 0,-3 0.0017 2 4.806 MINOR ENSMUSG00000044894 Uqcrq ENSMUST00000109021 ENSMUSP00000104649 TRANSLATION protein_coding - CCDS36151.1 1 82.0 0.0 2.0 36.9 111.1 1.0 -4,0 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000044894 Uqcrq ENSMUST00000061326 ENSMUSP00000053145 TRANSLATION protein_coding - CCDS36151.1 1 82.0 0.0 2.0 36.9 111.1 1.0 -4,0 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000044894 Uqcrq ENSMUST00000156503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041126 H2az2 ENSMUST00000093346 ENSMUSP00000091037 TRANSLATION protein_coding - CCDS83779.1 1 90.0 0.0 2.25 0.0 49.3 0.0 -4,-6 0.0036 - 5.856 MINOR ENSMUSG00000041126 H2az2 ENSMUST00000109737 ENSMUSP00000105359 TRANSLATION protein_coding - CCDS48750.1 1 128.0 0.0 3.25 35.3 118.4 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000043314 Or2z2 ENSMUST00000055204 ENSMUSP00000055961 TRANSLATION protein_coding - CCDS24732.1 - 315.0 0.0 1.0 5.0 180.1 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043314 Or2z2 ENSMUST00000215691 ENSMUSP00000148907 TRANSLATION protein_coding - CCDS24732.1 5 315.0 0.0 1.0 5.0 180.1 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000053574 4930563E22Rik ENSMUST00000066087 ENSMUSP00000159068 TRANSLATION protein_coding - - - 129.0 0.0 0.0 0.4 0.0 0.0 -4,0 0.5757 - 0.0 PRINCIPAL:1 ENSMUSG00000053574 4930563E22Rik ENSMUST00000124762 ENSMUSP00000159117 TRANSLATION nonsense_mediated_decay - - 1 129.0 0.0 0.0 0.4 0.0 0.0 -4,0 0.5757 - -2.0 MINOR ENSMUSG00000040447 Spns2 ENSMUST00000126452 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040447 Spns2 ENSMUST00000150491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040447 Spns2 ENSMUST00000144940 ENSMUSP00000120722 TRANSLATION protein_coding start - 3 131.0 0.0 0.3 0.0 0.0 3.0 -2,-5 0.0002 1 -2.0 MINOR ENSMUSG00000040447 Spns2 ENSMUST00000147418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040447 Spns2 ENSMUST00000045303 ENSMUSP00000044418 TRANSLATION protein_coding - CCDS48841.1 1 549.0 0.0 0.5475 2.2 123.8 12.0 -4,-5 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000040447 Spns2 ENSMUST00000129274 - NO_TRANSLATION retained_intron ENSMUSG00000034285 Nipsnap1 ENSMUST00000038570 ENSMUSP00000049338 TRANSLATION protein_coding - CCDS24392.1 1 284.0 0.0 6.78 19.0 113.7 0.0 -3,1 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000034285 Nipsnap1 ENSMUST00000141269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034285 Nipsnap1 ENSMUST00000135405 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034285 Nipsnap1 ENSMUST00000139737 ENSMUSP00000122885 TRANSLATION protein_coding stop - 5 136.0 0.0 2.78 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000034285 Nipsnap1 ENSMUST00000136552 ENSMUSP00000117760 TRANSLATION nonsense_mediated_decay - - 1 61.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0004 - -2.0 MINOR ENSMUSG00000034285 Nipsnap1 ENSMUST00000149603 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055971 Or1e19 ENSMUST00000069790 ENSMUSP00000066971 TRANSLATION protein_coding - CCDS25009.1 2 314.0 0.0 1.0 11.5 185.5 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000055010 A830031A19Rik ENSMUST00000068360 ENSMUSP00000063283 TRANSLATION protein_coding - - 1 113.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.5757 - 0.0 PRINCIPAL:1 ENSMUSG00000037393 Nmur2 ENSMUST00000037682 ENSMUSP00000044718 TRANSLATION protein_coding - CCDS24716.1 1 395.0 0.0 2.42 2.6 169.7 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000072640 Lyrm9 ENSMUST00000141321 ENSMUSP00000131608 TRANSLATION protein_coding stop - 3 97.0 0.0 2.0 0.0 51.3 0.0 -4,-6 0.0065 1 -2.0 MINOR ENSMUSG00000072640 Lyrm9 ENSMUST00000147875 ENSMUSP00000127853 TRANSLATION protein_coding - CCDS36240.1 1 78.0 0.0 2.0 30.4 51.3 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000072640 Lyrm9 ENSMUST00000100748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001123 Lgals9 ENSMUST00000108269 ENSMUSP00000103904 TRANSLATION protein_coding - CCDS25116.1 1 353.0 11.0 7.1 8.3 263.7 0.0 -4,-5 0.8445 11 17.0 ALTERNATIVE:1 ENSMUSG00000001123 Lgals9 ENSMUST00000108268 ENSMUSP00000103903 TRANSLATION protein_coding - CCDS48858.1 1 322.0 11.0 7.1 8.3 263.7 0.0 -4,-5 1.0 11 17.0 PRINCIPAL:4 ENSMUSG00000001123 Lgals9 ENSMUST00000073001 ENSMUSP00000072764 TRANSLATION protein_coding - - 5 352.0 11.0 7.1 8.3 263.7 0.0 -4,-5 0.6925 11 17.0 ALTERNATIVE:1 ENSMUSG00000001123 Lgals9 ENSMUST00000140073 - NO_TRANSLATION retained_intron ENSMUSG00000044243 Bhlha9 ENSMUST00000056184 ENSMUSP00000050516 TRANSLATION protein_coding - CCDS25068.2 - 231.0 0.0 0.6 2.3 43.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000061878 Sphk1 ENSMUST00000155102 ENSMUSP00000114819 TRANSLATION protein_coding stop - 3 116.0 10.0 3.0 0.0 86.1 0.0 -4,-7 0.0043 2 -2.0 MINOR ENSMUSG00000061878 Sphk1 ENSMUST00000138840 ENSMUSP00000121064 TRANSLATION protein_coding stop - 3 153.0 10.0 4.08 0.0 92.6 0.0 -4,-7 0.0122 2 -2.0 MINOR ENSMUSG00000061878 Sphk1 ENSMUST00000106388 ENSMUSP00000101996 TRANSLATION protein_coding - CCDS25668.1 5 382.0 10.0 6.08 1.1 92.6 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:2 ENSMUSG00000061878 Sphk1 ENSMUST00000106386 ENSMUSP00000101994 TRANSLATION protein_coding - CCDS25668.1 1 382.0 10.0 6.08 1.1 92.6 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:2 ENSMUSG00000061878 Sphk1 ENSMUST00000124682 ENSMUSP00000116055 TRANSLATION protein_coding stop - 3 153.0 10.0 4.08 0.0 92.3 0.0 -4,-7 0.0099 2 -2.0 MINOR ENSMUSG00000061878 Sphk1 ENSMUST00000148185 - NO_TRANSLATION retained_intron ENSMUSG00000061878 Sphk1 ENSMUST00000106387 ENSMUSP00000101995 TRANSLATION protein_coding - CCDS25668.1 5 382.0 10.0 6.08 1.1 92.6 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:2 ENSMUSG00000061878 Sphk1 ENSMUST00000136526 - NO_TRANSLATION retained_intron ENSMUSG00000061878 Sphk1 ENSMUST00000141798 ENSMUSP00000131010 TRANSLATION protein_coding - CCDS25669.1 1 388.0 10.0 6.08 0.0 92.6 0.0 0,-4 0.4715 4 12.0 ALTERNATIVE:2 ENSMUSG00000061878 Sphk1 ENSMUST00000063446 ENSMUSP00000067865 TRANSLATION protein_coding - CCDS25668.1 2 382.0 10.0 6.08 1.1 92.6 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:2 ENSMUSG00000061878 Sphk1 ENSMUST00000134834 - NO_TRANSLATION retained_intron ENSMUSG00000061878 Sphk1 ENSMUST00000063396 ENSMUSP00000064743 TRANSLATION protein_coding - CCDS25668.1 2 382.0 10.0 6.08 1.1 92.6 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:2 ENSMUSG00000061878 Sphk1 ENSMUST00000154034 ENSMUSP00000121219 TRANSLATION protein_coding stop - 2 251.0 10.0 5.08 0.0 92.6 0.0 -4,-7 0.0157 4 -2.0 MINOR ENSMUSG00000061878 Sphk1 ENSMUST00000100201 ENSMUSP00000097775 TRANSLATION protein_coding - CCDS48986.1 1 381.0 10.0 6.08 0.1 92.6 0.0 -4,-7 0.7092 4 12.0 ALTERNATIVE:2 ENSMUSG00000061878 Sphk1 ENSMUST00000145737 ENSMUSP00000114622 TRANSLATION protein_coding stop - 5 157.0 10.0 4.08 0.0 92.6 0.0 -4,-7 0.0122 2 -2.0 MINOR ENSMUSG00000061878 Sphk1 ENSMUST00000150658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061878 Sphk1 ENSMUST00000239437 - NO_TRANSLATION retained_intron ENSMUSG00000097886 Gsg1l2 ENSMUST00000181566 ENSMUSP00000137895 TRANSLATION protein_coding - CCDS83823.1 5 290.0 0.0 2.32375 3.5 144.9 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000097886 Gsg1l2 ENSMUST00000155317 ENSMUSP00000145865 TRANSLATION protein_coding stop - 5 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020676 Ccl11 ENSMUST00000000342 ENSMUSP00000000342 TRANSLATION protein_coding - CCDS36246.1 1 97.0 0.0 2.0 9.2 75.3 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018677 Slc25a39 ENSMUST00000147860 - NO_TRANSLATION retained_intron ENSMUSG00000018677 Slc25a39 ENSMUST00000128825 ENSMUSP00000121790 TRANSLATION protein_coding start - 3 116.0 0.0 1.98 0.0 31.0 3.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000018677 Slc25a39 ENSMUST00000142097 ENSMUSP00000114365 TRANSLATION nonsense_mediated_decay - - 5 128.0 0.0 1.2995 0.0 34.2 2.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000018677 Slc25a39 ENSMUST00000018821 ENSMUSP00000018821 TRANSLATION protein_coding - CCDS25498.1 1 359.0 0.0 6.2125 8.2 209.7 8.0 -4,-6 1.0 3 10.439 PRINCIPAL:4 ENSMUSG00000018677 Slc25a39 ENSMUST00000107098 ENSMUSP00000102715 TRANSLATION protein_coding - - 5 351.0 0.0 6.3775 8.8 208.4 8.0 -4,-6 0.845 3 11.0 ALTERNATIVE:1 ENSMUSG00000018677 Slc25a39 ENSMUST00000149777 ENSMUSP00000115365 TRANSLATION protein_coding stop - 5 219.0 0.0 3.7825 0.0 111.5 5.0 -4,-6 0.0023 2 -2.0 MINOR ENSMUSG00000018677 Slc25a39 ENSMUST00000134669 ENSMUSP00000114481 TRANSLATION nonsense_mediated_decay - - 5 136.0 0.0 1.2995 0.0 34.2 2.0 -4,-6 0.0016 - -2.0 MINOR ENSMUSG00000018677 Slc25a39 ENSMUST00000130436 ENSMUSP00000115087 TRANSLATION protein_coding stop - 3 178.0 0.0 3.1825 0.0 77.0 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000018677 Slc25a39 ENSMUST00000124755 ENSMUSP00000120021 TRANSLATION protein_coding stop - 3 152.0 0.0 2.3345 0.0 76.4 3.0 -4,-6 0.0016 - -2.0 MINOR ENSMUSG00000018677 Slc25a39 ENSMUST00000153395 - NO_TRANSLATION retained_intron ENSMUSG00000018677 Slc25a39 ENSMUST00000155104 ENSMUSP00000115445 TRANSLATION protein_coding stop - 2 266.0 0.0 4.6125 0.0 139.3 5.0 -4,-6 0.0028 2 -2.0 MINOR ENSMUSG00000018677 Slc25a39 ENSMUST00000123688 - NO_TRANSLATION retained_intron ENSMUSG00000018677 Slc25a39 ENSMUST00000154001 ENSMUSP00000116336 TRANSLATION protein_coding stop - 5 175.0 0.0 3.1825 0.0 77.0 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000018677 Slc25a39 ENSMUST00000147160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018677 Slc25a39 ENSMUST00000141535 - NO_TRANSLATION retained_intron ENSMUSG00000020472 Zkscan17 ENSMUST00000139707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020472 Zkscan17 ENSMUST00000101150 ENSMUSP00000098709 TRANSLATION protein_coding - CCDS70197.1 1 429.0 18.0 0.5 0.1 102.1 0.0 -4,-5 0.06 - 8.31 MINOR ENSMUSG00000020472 Zkscan17 ENSMUST00000139093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020472 Zkscan17 ENSMUST00000129941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020472 Zkscan17 ENSMUST00000134522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020472 Zkscan17 ENSMUST00000013262 ENSMUSP00000013262 TRANSLATION protein_coding - CCDS24770.1 1 585.0 18.0 1.3 0.4 234.2 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000020275 Rel ENSMUST00000102864 ENSMUSP00000099928 TRANSLATION protein_coding - CCDS24480.1 1 588.0 0.0 6.75 4.2 375.5 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000090173 Fbxw10 ENSMUST00000036085 ENSMUSP00000046156 TRANSLATION protein_coding - - 5 1030.0 0.0 4.365 0.0 56.0 0.0 -4,-6 0.3524 - 8.0 ALTERNATIVE:2 ENSMUSG00000090173 Fbxw10 ENSMUST00000150989 ENSMUSP00000117872 TRANSLATION protein_coding - CCDS24833.2 5 1020.0 0.0 4.365 0.1 56.0 0.0 -4,-6 0.6553 - 8.0 ALTERNATIVE:2 ENSMUSG00000090173 Fbxw10 ENSMUST00000127646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090173 Fbxw10 ENSMUST00000176577 ENSMUSP00000135870 TRANSLATION protein_coding - CCDS78968.1 1 1025.0 0.0 4.365 0.1 56.0 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000090173 Fbxw10 ENSMUST00000175804 - NO_TRANSLATION retained_intron ENSMUSG00000090173 Fbxw10 ENSMUST00000177336 ENSMUSP00000135294 TRANSLATION nonsense_mediated_decay - - 1 689.0 0.0 3.74 0.0 56.0 0.0 -4,-6 0.0299 - -2.0 MINOR ENSMUSG00000078154 Cdk2ap1rt ENSMUST00000104959 ENSMUSP00000100565 TRANSLATION protein_coding - - - 114.0 0.0 0.8 9.9 76.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040599 Mis12 ENSMUST00000164220 ENSMUSP00000127782 TRANSLATION protein_coding - CCDS24973.1 1 206.0 0.0 1.66 13.0 96.5 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000040599 Mis12 ENSMUST00000155236 ENSMUSP00000116762 TRANSLATION protein_coding stop - 3 8.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040599 Mis12 ENSMUST00000143762 ENSMUSP00000115256 TRANSLATION protein_coding stop - 3 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040599 Mis12 ENSMUST00000136137 ENSMUSP00000121057 TRANSLATION protein_coding stop - 3 17.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040599 Mis12 ENSMUST00000048807 ENSMUSP00000039500 TRANSLATION protein_coding - CCDS24973.1 1 206.0 0.0 1.66 13.0 96.5 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000040599 Mis12 ENSMUST00000133413 ENSMUSP00000123291 TRANSLATION protein_coding stop - 2 12.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006782 Cnp ENSMUST00000103120 ENSMUSP00000099409 TRANSLATION protein_coding - CCDS25427.1 1 420.0 9.0 3.0 16.6 433.6 0.0 -4,0 1.0 31 22.0 PRINCIPAL:1 ENSMUSG00000006782 Cnp ENSMUST00000147403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006782 Cnp ENSMUST00000150414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006782 Cnp ENSMUST00000148034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078254 Krtap29-1 ENSMUST00000105051 ENSMUSP00000100672 TRANSLATION protein_coding - - - 342.0 0.0 0.0 0.1 29.2 0.0 -4,-5 0.733 - 6.0 PRINCIPAL:1 ENSMUSG00000018377 Vezf1 ENSMUST00000143052 ENSMUSP00000114394 TRANSLATION protein_coding start - 5 336.0 18.0 3.08 0.0 37.0 0.0 -4,-5 0.0253 4 -2.0 MINOR ENSMUSG00000018377 Vezf1 ENSMUST00000018521 ENSMUSP00000018521 TRANSLATION protein_coding - CCDS48880.1 1 518.0 24.0 2.95 7.9 91.7 0.0 -4,-5 1.0 6 19.742 PRINCIPAL:1 ENSMUSG00000020528 Prpsap2 ENSMUST00000168115 ENSMUSP00000126274 TRANSLATION protein_coding - CCDS24819.1 1 369.0 0.0 7.2 19.3 472.0 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000020528 Prpsap2 ENSMUST00000151966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020528 Prpsap2 ENSMUST00000123575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020528 Prpsap2 ENSMUST00000004955 ENSMUSP00000004955 TRANSLATION protein_coding - CCDS24819.1 1 369.0 0.0 7.2 19.3 472.0 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000000378 Ccm2 ENSMUST00000109721 ENSMUSP00000105343 TRANSLATION protein_coding - CCDS48751.1 5 389.0 0.0 3.05 0.0 157.0 0.0 -4,-5 0.0641 8 10.938 MINOR ENSMUSG00000000378 Ccm2 ENSMUST00000109722 ENSMUSP00000105344 TRANSLATION protein_coding - CCDS48751.1 1 389.0 0.0 3.05 0.0 157.0 0.0 -4,-5 0.0641 8 10.938 MINOR ENSMUSG00000000378 Ccm2 ENSMUST00000159007 ENSMUSP00000125608 TRANSLATION protein_coding stop - 3 113.0 0.0 1.982 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000000378 Ccm2 ENSMUST00000161667 - NO_TRANSLATION retained_intron ENSMUSG00000000378 Ccm2 ENSMUST00000161501 ENSMUSP00000123790 TRANSLATION nonsense_mediated_decay - - 5 126.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000378 Ccm2 ENSMUST00000160633 ENSMUSP00000125072 TRANSLATION protein_coding stop - 5 243.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000000378 Ccm2 ENSMUST00000000388 ENSMUSP00000000388 TRANSLATION protein_coding - CCDS24422.1 1 453.0 0.0 3.582 20.5 157.0 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000000378 Ccm2 ENSMUST00000144293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052298 Cdc42se2 ENSMUST00000064104 ENSMUSP00000070725 TRANSLATION protein_coding - CCDS36153.1 1 84.0 0.0 1.5 31.2 26.0 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000052298 Cdc42se2 ENSMUST00000153209 ENSMUSP00000120253 TRANSLATION protein_coding stop - 3 52.0 0.0 1.0 0.0 26.0 0.0 -4,-6 0.0097 - -2.0 MINOR ENSMUSG00000052298 Cdc42se2 ENSMUST00000123424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052298 Cdc42se2 ENSMUST00000135903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052298 Cdc42se2 ENSMUST00000136059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018986 Slfn3 ENSMUST00000216599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018986 Slfn3 ENSMUST00000214041 ENSMUSP00000150425 TRANSLATION protein_coding - - 1 640.0 0.0 0.7 0.0 34.2 0.0 -4,-5 0.8063 - 12.0 PRINCIPAL:1 ENSMUSG00000018986 Slfn3 ENSMUST00000019130 ENSMUSP00000019130 TRANSLATION protein_coding - CCDS25159.1 1 517.0 0.0 0.3 0.0 34.2 0.0 -4,-6 0.2358 - 8.574 MINOR ENSMUSG00000062128 Or1e1 ENSMUST00000120137 ENSMUSP00000114110 TRANSLATION protein_coding - CCDS25006.1 2 314.0 0.0 1.0 10.0 206.1 4.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062128 Or1e1 ENSMUST00000108465 ENSMUSP00000104105 TRANSLATION protein_coding - CCDS25006.1 - 314.0 0.0 1.0 10.0 206.1 4.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062115 Rai1 ENSMUST00000132012 ENSMUSP00000118543 TRANSLATION protein_coding stop - 2 106.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000062115 Rai1 ENSMUST00000102688 ENSMUSP00000099749 TRANSLATION protein_coding - CCDS24784.1 5 1889.0 8.0 1.06 0.1 37.3 0.0 -4,-7 1.0 29 18.0 PRINCIPAL:1 ENSMUSG00000062115 Rai1 ENSMUST00000149770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062115 Rai1 ENSMUST00000090806 ENSMUSP00000088315 TRANSLATION protein_coding - - 1 1840.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0798 28 0.0 MINOR ENSMUSG00000062115 Rai1 ENSMUST00000064190 ENSMUSP00000070896 TRANSLATION protein_coding - CCDS24784.1 1 1889.0 8.0 1.06 0.1 37.3 0.0 -4,-7 1.0 29 18.0 PRINCIPAL:1 ENSMUSG00000062115 Rai1 ENSMUST00000156902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062115 Rai1 ENSMUST00000171108 ENSMUSP00000126183 TRANSLATION protein_coding - CCDS24784.1 1 1889.0 8.0 1.06 0.1 37.3 0.0 -4,-7 1.0 29 18.0 PRINCIPAL:1 ENSMUSG00000061981 Flot2 ENSMUST00000136353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061981 Flot2 ENSMUST00000148162 ENSMUSP00000133147 TRANSLATION nonsense_mediated_decay - - 1 86.0 0.0 2.25 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000061981 Flot2 ENSMUST00000100784 ENSMUSP00000098347 TRANSLATION protein_coding - CCDS25088.1 1 379.0 0.0 7.33 19.9 100.6 0.0 -4,-5 0.7427 22 5.53 MINOR ENSMUSG00000061981 Flot2 ENSMUST00000073660 ENSMUSP00000073342 TRANSLATION protein_coding - - 5 428.0 0.0 8.75 32.9 109.6 0.0 -4,-6 0.8343 22 12.0 ALTERNATIVE:1 ENSMUSG00000061981 Flot2 ENSMUST00000072289 ENSMUSP00000072136 TRANSLATION protein_coding - CCDS36237.1 1 428.0 0.0 8.58 32.9 113.8 0.0 -4,-5 1.0 23 11.658 PRINCIPAL:3 ENSMUSG00000039691 Tspan10 ENSMUST00000044105 ENSMUSP00000041883 TRANSLATION protein_coding - CCDS25733.2 1 332.0 0.0 0.532 1.0 131.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039691 Tspan10 ENSMUST00000143192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053519 Kcnip1 ENSMUST00000154760 - NO_TRANSLATION retained_intron ENSMUSG00000053519 Kcnip1 ENSMUST00000135034 - NO_TRANSLATION retained_intron ENSMUSG00000053519 Kcnip1 ENSMUST00000238903 ENSMUSP00000158966 TRANSLATION protein_coding - - - 225.0 10.0 6.08 29.4 82.9 0.0 -4,-1 0.8045 1 17.434 ALTERNATIVE:1 ENSMUSG00000053519 Kcnip1 ENSMUST00000065970 ENSMUSP00000069063 TRANSLATION protein_coding - CCDS24537.1 1 216.0 10.0 6.08 29.9 82.9 0.0 -4,-7 1.0 1 17.502 PRINCIPAL:4 ENSMUSG00000053519 Kcnip1 ENSMUST00000109340 ENSMUSP00000104964 TRANSLATION protein_coding - CCDS56766.1 1 227.0 10.0 6.08 17.0 82.9 0.0 -4,-2 0.8534 1 15.718 MINOR ENSMUSG00000053519 Kcnip1 ENSMUST00000238436 ENSMUSP00000158813 TRANSLATION protein_coding - - - 232.0 10.0 6.33 24.0 82.9 0.0 -4,-7 0.7938 1 17.184 ALTERNATIVE:1 ENSMUSG00000053519 Kcnip1 ENSMUST00000101368 ENSMUSP00000098919 TRANSLATION protein_coding - CCDS70160.1 2 188.0 10.0 5.75 21.2 82.9 0.0 -4,-5 0.8544 1 15.638 MINOR ENSMUSG00000038268 Ovca2 ENSMUST00000071562 ENSMUSP00000071493 TRANSLATION protein_coding - CCDS25041.1 1 225.0 4.0 0.78 11.0 183.9 0.0 -4,0 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000038268 Ovca2 ENSMUST00000123489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001105 Ift20 ENSMUST00000152016 - NO_TRANSLATION retained_intron ENSMUSG00000001105 Ift20 ENSMUST00000137120 - NO_TRANSLATION retained_intron ENSMUSG00000001105 Ift20 ENSMUST00000050366 ENSMUSP00000051699 TRANSLATION protein_coding stop - 5 111.0 0.0 2.75 0.0 148.0 0.0 -4,-5 0.0006 2 -2.0 MINOR ENSMUSG00000001105 Ift20 ENSMUST00000108275 ENSMUSP00000103910 TRANSLATION protein_coding - CCDS25111.1 1 132.0 0.0 3.5 32.9 169.9 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000001105 Ift20 ENSMUST00000128788 ENSMUSP00000118015 TRANSLATION protein_coding - CCDS25111.1 1 132.0 0.0 3.5 32.9 169.9 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000017188 Coa3 ENSMUST00000017332 ENSMUSP00000017332 TRANSLATION protein_coding - CCDS25460.1 1 108.0 0.0 1.8 0.4 177.6 0.0 -4,-6 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000017188 Coa3 ENSMUST00000168089 ENSMUSP00000130367 TRANSLATION protein_coding - - 3 90.0 0.0 1.3 0.0 111.1 0.0 -4,-6 0.0 3 6.342 MINOR ENSMUSG00000035352 Ccl12 ENSMUST00000000194 ENSMUSP00000000194 TRANSLATION protein_coding - CCDS36247.1 1 104.0 0.0 2.3 0.0 79.0 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035352 Ccl12 ENSMUST00000124916 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018543 1700001P01Rik ENSMUST00000107576 ENSMUSP00000103202 TRANSLATION protein_coding - CCDS36297.1 1 155.0 0.0 2.0 12.7 175.8 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042377 Fam83g ENSMUST00000093019 ENSMUSP00000090697 TRANSLATION protein_coding - CCDS36175.1 1 812.0 0.0 1.8 0.4 392.3 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000042377 Fam83g ENSMUST00000070453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049612 Omg ENSMUST00000164465 ENSMUSP00000132918 TRANSLATION protein_coding - CCDS25120.2 1 443.0 0.0 1.0 9.0 92.6 0.0 2,-3 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000069917 Hba-a2 ENSMUST00000147010 - NO_TRANSLATION retained_intron ENSMUSG00000069917 Hba-a2 ENSMUST00000093207 ENSMUSP00000090895 TRANSLATION protein_coding - CCDS48766.1 1 142.0 32.0 3.0 33.9 99.8 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000038255 Neurod2 ENSMUST00000041685 ENSMUSP00000041373 TRANSLATION protein_coding - CCDS25343.1 1 383.0 0.0 0.5 10.7 197.3 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000078572 Ndufaf8 ENSMUST00000186913 - NO_TRANSLATION retained_intron ENSMUSG00000078572 Ndufaf8 ENSMUST00000106223 ENSMUSP00000101830 TRANSLATION protein_coding - CCDS36388.1 1 74.0 0.0 2.08 8.7 0.0 0.0 -4,0 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000078572 Ndufaf8 ENSMUST00000185558 ENSMUSP00000140397 TRANSLATION protein_coding - - 5 86.0 0.0 1.75 0.0 0.0 0.0 -4,0 0.0103 2 5.046 MINOR ENSMUSG00000069910 Spdl1 ENSMUST00000093191 ENSMUSP00000090882 TRANSLATION protein_coding - CCDS24541.1 1 608.0 0.0 0.0 5.1 0.0 0.0 -4,-5 1.0 7 2.0 PRINCIPAL:1 ENSMUSG00000069910 Spdl1 ENSMUST00000148853 - NO_TRANSLATION retained_intron ENSMUSG00000069910 Spdl1 ENSMUST00000148387 - NO_TRANSLATION retained_intron ENSMUSG00000001053 N4bp3 ENSMUST00000156835 ENSMUSP00000123658 TRANSLATION protein_coding stop - 2 150.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000001053 N4bp3 ENSMUST00000001080 ENSMUSP00000001080 TRANSLATION protein_coding - CCDS24657.1 1 537.0 0.0 0.0 8.8 142.5 0.0 -4,-6 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000001053 N4bp3 ENSMUST00000142721 ENSMUSP00000122860 TRANSLATION protein_coding stop - 3 128.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000049807 Arhgap23 ENSMUST00000121799 ENSMUSP00000112999 TRANSLATION protein_coding - - 5 1488.0 5.0 8.23 0.3 269.5 0.0 -4,-6 1.0 23 17.0 PRINCIPAL:1 ENSMUSG00000049807 Arhgap23 ENSMUST00000107601 ENSMUSP00000103227 TRANSLATION protein_coding - CCDS36293.1 5 1277.0 5.0 5.14 0.0 228.5 0.0 -4,-6 0.1219 20 8.54 MINOR ENSMUSG00000049807 Arhgap23 ENSMUST00000093940 ENSMUSP00000091472 TRANSLATION protein_coding - - 1 325.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0021 4 0.0 MINOR ENSMUSG00000049807 Arhgap23 ENSMUST00000142465 ENSMUSP00000123191 TRANSLATION nonsense_mediated_decay - - 5 634.0 5.0 5.14 0.0 228.5 0.0 -4,-5 0.0008 12 -2.0 MINOR ENSMUSG00000049807 Arhgap23 ENSMUST00000152933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023781 Hes7 ENSMUST00000024543 ENSMUSP00000024543 TRANSLATION protein_coding - CCDS24883.1 1 225.0 0.0 2.6 5.1 44.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000039703 Nploc4 ENSMUST00000248112 ENSMUSP00000159541 TRANSLATION protein_coding - - - 651.0 4.0 10.115 0.0 744.2 0.0 -4,-1 0.1307 19 16.0 MINOR ENSMUSG00000039703 Nploc4 ENSMUST00000103017 ENSMUSP00000099306 TRANSLATION protein_coding - CCDS25732.1 1 576.0 4.0 9.635 0.0 632.4 0.0 -4,-5 0.06 16 9.04 MINOR ENSMUSG00000039703 Nploc4 ENSMUST00000132519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039703 Nploc4 ENSMUST00000044271 ENSMUSP00000035851 TRANSLATION protein_coding - CCDS56827.1 1 608.0 4.0 10.115 21.5 744.2 0.0 -4,-5 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000039703 Nploc4 ENSMUST00000136095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039703 Nploc4 ENSMUST00000137041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006920 Ezh1 ENSMUST00000138835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006920 Ezh1 ENSMUST00000100417 ENSMUSP00000097984 TRANSLATION protein_coding - - 1 579.0 7.0 7.25 0.0 61.9 0.0 -4,-5 0.0 3 2.0 MINOR ENSMUSG00000006920 Ezh1 ENSMUST00000154211 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006920 Ezh1 ENSMUST00000146884 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006920 Ezh1 ENSMUST00000128974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006920 Ezh1 ENSMUST00000151291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006920 Ezh1 ENSMUST00000107285 ENSMUSP00000102906 TRANSLATION protein_coding - CCDS36335.1 1 750.0 27.0 12.0 12.3 126.0 0.0 -4,-6 1.0 5 17.0 PRINCIPAL:4 ENSMUSG00000006920 Ezh1 ENSMUST00000107284 ENSMUSP00000102905 TRANSLATION protein_coding - - 1 747.0 27.0 12.0 12.3 126.0 0.0 -4,-5 0.8783 5 17.0 ALTERNATIVE:1 ENSMUSG00000006920 Ezh1 ENSMUST00000134622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056959 Or2t45 ENSMUST00000203256 ENSMUSP00000144944 TRANSLATION protein_coding - CCDS24744.1 3 309.0 0.0 1.0 5.2 172.7 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000056959 Or2t45 ENSMUST00000081533 ENSMUSP00000080248 TRANSLATION protein_coding - CCDS24744.1 - 309.0 0.0 1.0 5.2 172.7 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000001891 Ugp2 ENSMUST00000133343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001891 Ugp2 ENSMUST00000102875 ENSMUSP00000099939 TRANSLATION protein_coding - CCDS24464.1 1 508.0 19.0 9.165 34.9 660.1 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000001891 Ugp2 ENSMUST00000060895 ENSMUSP00000056324 TRANSLATION protein_coding - CCDS70148.1 1 497.0 19.0 9.0 19.3 660.1 0.0 -4,-5 0.8769 23 19.83 MINOR ENSMUSG00000001891 Ugp2 ENSMUST00000143890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020758 Itgb4 ENSMUST00000150129 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020758 Itgb4 ENSMUST00000021107 ENSMUSP00000021107 TRANSLATION protein_coding - CCDS36376.1 5 1802.0 13.0 18.38 5.6 757.9 1.0 3,-2 1.0 61 16.0 ALTERNATIVE:1 ENSMUSG00000020758 Itgb4 ENSMUST00000169928 ENSMUSP00000127604 TRANSLATION protein_coding - CCDS36376.1 5 1802.0 13.0 18.38 5.6 757.9 1.0 3,-2 1.0 61 16.0 ALTERNATIVE:1 ENSMUSG00000020758 Itgb4 ENSMUST00000106461 ENSMUSP00000102069 TRANSLATION protein_coding - - 5 1818.0 13.0 18.3 2.8 760.8 1.0 3,-2 0.773 60 14.62 MINOR ENSMUSG00000020758 Itgb4 ENSMUST00000106460 ENSMUSP00000102068 TRANSLATION protein_coding - - 5 1806.0 13.0 18.38 5.6 760.8 1.0 3,-2 0.9224 62 16.0 PRINCIPAL:3 ENSMUSG00000020758 Itgb4 ENSMUST00000151691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020758 Itgb4 ENSMUST00000106458 ENSMUSP00000102066 TRANSLATION protein_coding - - 5 1818.0 13.0 18.3 2.8 760.8 1.0 3,-2 0.773 60 14.62 MINOR ENSMUSG00000020758 Itgb4 ENSMUST00000068981 ENSMUSP00000070811 TRANSLATION protein_coding - - 5 1753.0 13.0 18.3 5.6 760.8 1.0 3,-2 0.8251 61 15.838 ALTERNATIVE:1 ENSMUSG00000020758 Itgb4 ENSMUST00000127523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020758 Itgb4 ENSMUST00000130286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071415 Rpl23 ENSMUST00000151965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071415 Rpl23 ENSMUST00000128801 ENSMUSP00000117316 TRANSLATION protein_coding stop - 3 60.0 0.0 1.25 0.0 0.0 0.0 -2,0 0.0154 2 -2.0 MINOR ENSMUSG00000071415 Rpl23 ENSMUST00000103146 ENSMUSP00000099435 TRANSLATION protein_coding - CCDS25331.1 1 140.0 0.0 3.75 32.7 0.0 0.0 -4,-2 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000071415 Rpl23 ENSMUST00000150955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071415 Rpl23 ENSMUST00000151118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020459 Mtif2 ENSMUST00000156352 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020459 Mtif2 ENSMUST00000136351 ENSMUSP00000122801 TRANSLATION protein_coding stop - 3 196.0 8.0 0.75 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000020459 Mtif2 ENSMUST00000093239 ENSMUSP00000090926 TRANSLATION protein_coding - CCDS24496.1 1 727.0 15.0 11.5 11.0 216.2 0.0 -4,-1 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000020459 Mtif2 ENSMUST00000129893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020459 Mtif2 ENSMUST00000133452 ENSMUSP00000122233 TRANSLATION protein_coding stop - 5 167.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000020459 Mtif2 ENSMUST00000144321 ENSMUSP00000114299 TRANSLATION protein_coding stop - 1 401.0 15.0 5.5 0.0 98.0 0.0 -4,-1 0.0004 5 -2.0 MINOR ENSMUSG00000020459 Mtif2 ENSMUST00000020749 ENSMUSP00000020749 TRANSLATION protein_coding - CCDS24496.1 1 727.0 15.0 11.5 11.0 216.2 0.0 -4,-1 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000020459 Mtif2 ENSMUST00000132783 ENSMUSP00000121327 TRANSLATION protein_coding start/stop - 5 247.0 15.0 5.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002129 Sf3a1 ENSMUST00000132666 - NO_TRANSLATION retained_intron ENSMUSG00000002129 Sf3a1 ENSMUST00000133095 - NO_TRANSLATION retained_intron ENSMUSG00000002129 Sf3a1 ENSMUST00000129583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002129 Sf3a1 ENSMUST00000002198 ENSMUSP00000002198 TRANSLATION protein_coding - CCDS24380.1 1 791.0 0.0 7.7 0.1 396.3 0.0 -4,-5 1.0 27 12.0 PRINCIPAL:1 ENSMUSG00000009075 Cabp7 ENSMUST00000009219 ENSMUSP00000009219 TRANSLATION protein_coding - CCDS24390.1 1 215.0 12.0 2.96 28.2 50.9 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000072709 Or1e21 ENSMUST00000075532 ENSMUSP00000074971 TRANSLATION protein_coding - CCDS25010.1 - 311.0 0.0 1.0 6.1 188.2 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000072709 Or1e21 ENSMUST00000121209 ENSMUSP00000112462 TRANSLATION protein_coding - CCDS25010.1 3 311.0 0.0 1.0 6.1 188.2 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000072709 Or1e21 ENSMUST00000127789 ENSMUSP00000116228 TRANSLATION protein_coding - CCDS25010.1 5 311.0 0.0 1.0 6.1 188.2 5.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000018238 Gdf9 ENSMUST00000018382 ENSMUSP00000018382 TRANSLATION protein_coding - CCDS24679.1 1 441.0 0.0 0.0 0.4 91.1 0.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000018238 Gdf9 ENSMUST00000156037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018238 Gdf9 ENSMUST00000145369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035112 Wnk4 ENSMUST00000147741 ENSMUSP00000131298 TRANSLATION nonsense_mediated_decay - - 5 413.0 16.0 4.85 0.0 161.9 0.0 -4,-5 0.0005 3 -2.0 MINOR ENSMUSG00000035112 Wnk4 ENSMUST00000103108 ENSMUSP00000099397 TRANSLATION protein_coding - CCDS25459.1 1 1222.0 16.0 9.58 0.1 262.7 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000035112 Wnk4 ENSMUST00000170056 ENSMUSP00000132123 TRANSLATION nonsense_mediated_decay start - 5 153.0 0.0 1.53 0.0 82.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035112 Wnk4 ENSMUST00000139487 ENSMUSP00000129666 TRANSLATION nonsense_mediated_decay - - 1 285.0 9.0 1.2 0.0 39.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035112 Wnk4 ENSMUST00000170372 ENSMUSP00000131954 TRANSLATION protein_coding start - 3 30.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000018914 Il3 ENSMUST00000019058 ENSMUSP00000019058 TRANSLATION protein_coding - CCDS24693.1 1 166.0 0.0 3.8 0.0 129.3 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020705 Ddx42 ENSMUST00000152860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020705 Ddx42 ENSMUST00000021046 ENSMUSP00000021046 TRANSLATION protein_coding - CCDS48956.1 1 929.0 17.0 9.1 4.4 261.3 0.0 -4,-7 1.0 29 20.0 PRINCIPAL:1 ENSMUSG00000043857 Mgat5b ENSMUST00000126757 - NO_TRANSLATION retained_intron ENSMUSG00000043857 Mgat5b ENSMUST00000136584 ENSMUSP00000122276 TRANSLATION protein_coding start/stop - 3 214.0 0.0 4.03 0.0 376.8 0.0 -4,-7 0.0007 1 -2.0 MINOR ENSMUSG00000043857 Mgat5b ENSMUST00000139905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043857 Mgat5b ENSMUST00000103027 ENSMUSP00000099316 TRANSLATION protein_coding - CCDS25682.1 5 792.0 0.0 7.305 19.0 883.2 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000049811 Fam161a ENSMUST00000094363 ENSMUSP00000091923 TRANSLATION protein_coding start - 1 236.0 0.0 0.0 0.0 43.9 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000049811 Fam161a ENSMUST00000208732 ENSMUSP00000146368 TRANSLATION protein_coding start - 5 562.0 0.0 1.4 0.0 113.9 0.0 -4,-5 0.1072 - -2.0 MINOR ENSMUSG00000049811 Fam161a ENSMUST00000151877 ENSMUSP00000121167 TRANSLATION protein_coding start - 3 287.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049811 Fam161a ENSMUST00000238880 ENSMUSP00000158891 TRANSLATION protein_coding - CCDS48757.1 - 475.0 0.0 0.6 0.0 113.9 0.0 -4,-5 0.2034 - 2.574 ALTERNATIVE:2 ENSMUSG00000049811 Fam161a ENSMUST00000109557 ENSMUSP00000105184 TRANSLATION protein_coding - - 2 448.0 0.0 0.6 0.0 113.9 0.0 -4,-5 0.7012 - 2.574 PRINCIPAL:2 ENSMUSG00000049811 Fam161a ENSMUST00000058269 ENSMUSP00000063091 TRANSLATION protein_coding - - 1 448.0 0.0 0.6 0.0 113.9 0.0 -4,-5 0.7012 - 2.574 PRINCIPAL:2 ENSMUSG00000049811 Fam161a ENSMUST00000173923 ENSMUSP00000133293 TRANSLATION protein_coding stop - 1 110.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049811 Fam161a ENSMUST00000172602 ENSMUSP00000134485 TRANSLATION protein_coding - - 2 448.0 0.0 0.6 0.0 113.9 0.0 -4,-5 0.7012 - 2.574 PRINCIPAL:2 ENSMUSG00000056962 Jmjd6 ENSMUST00000140349 ENSMUSP00000120850 TRANSLATION nonsense_mediated_decay start - 5 287.0 3.0 4.5 0.0 103.2 0.0 -4,-5 0.0041 4 -2.0 MINOR ENSMUSG00000056962 Jmjd6 ENSMUST00000142495 ENSMUSP00000117922 TRANSLATION nonsense_mediated_decay - - 1 270.0 2.0 4.0 0.0 72.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000056962 Jmjd6 ENSMUST00000130120 - NO_TRANSLATION retained_intron ENSMUSG00000056962 Jmjd6 ENSMUST00000124831 ENSMUSP00000122867 TRANSLATION protein_coding start - 3 213.0 1.0 2.69034 0.0 64.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056962 Jmjd6 ENSMUST00000141735 - NO_TRANSLATION retained_intron ENSMUSG00000056962 Jmjd6 ENSMUST00000047616 ENSMUSP00000047570 TRANSLATION protein_coding - CCDS25678.1 1 403.0 3.0 6.5 20.0 103.2 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000056962 Jmjd6 ENSMUST00000140513 ENSMUSP00000115086 TRANSLATION nonsense_mediated_decay start - 1 309.0 3.0 4.5 0.0 103.2 0.0 -4,-5 0.0044 4 -2.0 MINOR ENSMUSG00000058275 Or1d2 ENSMUST00000077794 ENSMUSP00000076967 TRANSLATION protein_coding - CCDS25031.1 - 312.0 0.0 1.0 10.4 173.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058275 Or1d2 ENSMUST00000216362 ENSMUSP00000149922 TRANSLATION protein_coding - CCDS25031.1 5 312.0 0.0 1.0 10.4 173.7 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078656 Vps25 ENSMUST00000144306 ENSMUSP00000131026 TRANSLATION nonsense_mediated_decay - - 5 91.0 0.0 2.698 0.0 94.4 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000078656 Vps25 ENSMUST00000121331 ENSMUSP00000114100 TRANSLATION protein_coding - - 2 128.0 0.0 3.58 0.0 121.9 0.0 -4,-5 0.0 8 3.0 MINOR ENSMUSG00000078656 Vps25 ENSMUST00000042477 ENSMUSP00000042088 TRANSLATION protein_coding - CCDS25458.1 1 176.0 0.0 5.08 34.6 187.0 0.0 -4,-2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000078656 Vps25 ENSMUST00000100414 ENSMUSP00000097981 TRANSLATION protein_coding - CCDS70313.1 1 172.0 0.0 4.08 0.0 177.2 0.0 -4,-2 0.082 8 5.336 MINOR ENSMUSG00000078656 Vps25 ENSMUST00000107280 ENSMUSP00000102901 TRANSLATION protein_coding - CCDS70311.1 2 184.0 0.0 4.915 34.6 176.6 0.0 -4,-2 0.9333 10 10.336 MINOR ENSMUSG00000078656 Vps25 ENSMUST00000123529 - NO_TRANSLATION retained_intron ENSMUSG00000078656 Vps25 ENSMUST00000007533 ENSMUSP00000007533 TRANSLATION protein_coding - CCDS70312.1 1 148.0 0.0 4.278 0.0 177.2 0.0 -4,-2 0.0183 8 5.732 MINOR ENSMUSG00000041592 Sdk2 ENSMUST00000041627 ENSMUSP00000038972 TRANSLATION protein_coding - CCDS25605.1 1 2176.0 0.0 30.43 0.4 821.0 0.0 3,-3 1.0 29 12.0 PRINCIPAL:1 ENSMUSG00000041592 Sdk2 ENSMUST00000141943 ENSMUSP00000116872 TRANSLATION protein_coding stop - 1 895.0 0.0 15.1 0.0 337.6 0.0 3,-3 0.0056 9 -2.0 MINOR ENSMUSG00000041592 Sdk2 ENSMUST00000156955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041592 Sdk2 ENSMUST00000155651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041592 Sdk2 ENSMUST00000144301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041592 Sdk2 ENSMUST00000125879 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049336 Tenm2 ENSMUST00000149787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049336 Tenm2 ENSMUST00000102801 ENSMUSP00000099865 TRANSLATION protein_coding - CCDS24546.1 5 2764.0 0.0 16.61 9.4 682.2 0.0 -4,-7 1.0 37 11.0 PRINCIPAL:4 ENSMUSG00000049336 Tenm2 ENSMUST00000163524 ENSMUSP00000129951 TRANSLATION protein_coding - CCDS24546.1 5 2764.0 0.0 16.61 9.4 682.2 0.0 -4,-7 1.0 37 11.0 PRINCIPAL:4 ENSMUSG00000049336 Tenm2 ENSMUST00000128501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049336 Tenm2 ENSMUST00000146113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049336 Tenm2 ENSMUST00000157030 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049336 Tenm2 ENSMUST00000155147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049336 Tenm2 ENSMUST00000057207 ENSMUSP00000052014 TRANSLATION protein_coding - - 5 2765.0 0.0 16.61 9.4 682.2 0.0 -4,-7 0.8479 37 11.0 ALTERNATIVE:1 ENSMUSG00000063316 Rpl27 ENSMUST00000107249 ENSMUSP00000102870 TRANSLATION protein_coding - CCDS25470.1 2 136.0 0.0 4.0 36.2 159.3 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000063316 Rpl27 ENSMUST00000152162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063316 Rpl27 ENSMUST00000127514 ENSMUSP00000120418 TRANSLATION protein_coding start - 5 87.0 0.0 1.75 0.0 103.0 0.0 -4,-2 0.0001 1 -2.0 MINOR ENSMUSG00000063316 Rpl27 ENSMUST00000139939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063316 Rpl27 ENSMUST00000077856 ENSMUSP00000090305 TRANSLATION protein_coding - CCDS25470.1 1 136.0 0.0 4.0 36.2 159.3 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020810 Cygb ENSMUST00000021166 ENSMUSP00000021166 TRANSLATION protein_coding - CCDS25673.1 1 190.0 17.0 3.33 9.1 86.4 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000078260 Gm11569 ENSMUST00000105057 ENSMUSP00000100678 TRANSLATION protein_coding - CCDS48919.1 - 180.0 0.0 0.0 1.2 116.6 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000039976 Tbc1d16 ENSMUST00000036113 ENSMUSP00000048516 TRANSLATION protein_coding - CCDS25711.1 1 766.0 0.0 3.44 7.9 157.7 0.0 -4,-2 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000039976 Tbc1d16 ENSMUST00000207655 ENSMUSP00000147182 TRANSLATION protein_coding - CCDS83940.1 1 765.0 0.0 3.44 7.9 157.7 0.0 -4,-2 0.9985 6 10.0 ALTERNATIVE:1 ENSMUSG00000039976 Tbc1d16 ENSMUST00000125856 ENSMUSP00000119431 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000005950 P2rx5 ENSMUST00000006104 ENSMUSP00000006104 TRANSLATION protein_coding - CCDS24998.1 1 455.0 0.0 8.5 2.5 529.1 4.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000005950 P2rx5 ENSMUST00000136894 ENSMUSP00000121834 TRANSLATION protein_coding stop - 5 354.0 0.0 7.15 0.0 452.1 3.0 -4,-7 0.0067 1 -2.0 MINOR ENSMUSG00000005950 P2rx5 ENSMUST00000135202 ENSMUSP00000118448 TRANSLATION protein_coding stop - 5 330.0 0.0 6.4 0.0 393.1 3.0 -4,-7 0.0039 1 -2.0 MINOR ENSMUSG00000020515 Cnot8 ENSMUST00000108843 ENSMUSP00000104471 TRANSLATION protein_coding - CCDS24722.1 1 292.0 2.0 6.55 24.2 81.0 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000020515 Cnot8 ENSMUST00000133923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020515 Cnot8 ENSMUST00000020822 ENSMUSP00000020822 TRANSLATION protein_coding - CCDS24722.1 1 292.0 2.0 6.55 24.2 81.0 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000020515 Cnot8 ENSMUST00000134896 ENSMUSP00000116116 TRANSLATION protein_coding stop - 2 75.0 1.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018931 Natd1 ENSMUST00000019075 ENSMUSP00000019075 TRANSLATION protein_coding - CCDS24802.1 1 110.0 18.0 2.8 29.4 79.4 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000018931 Natd1 ENSMUST00000143800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033983 Coil ENSMUST00000140549 - NO_TRANSLATION retained_intron ENSMUSG00000033983 Coil ENSMUST00000036649 ENSMUSP00000047588 TRANSLATION protein_coding - CCDS36277.1 1 573.0 0.0 0.0 3.3 109.7 0.0 -4,-7 1.0 4 1.0 PRINCIPAL:2 ENSMUSG00000033983 Coil ENSMUST00000107898 ENSMUSP00000103530 TRANSLATION protein_coding - - 5 570.0 0.0 0.0 3.3 109.7 0.0 -4,-6 0.5251 4 1.0 ALTERNATIVE:2 ENSMUSG00000018761 Mpdu1 ENSMUST00000127118 - NO_TRANSLATION retained_intron ENSMUSG00000018761 Mpdu1 ENSMUST00000125389 ENSMUSP00000129025 TRANSLATION nonsense_mediated_decay start - 2 129.0 0.0 1.75 0.0 49.5 2.0 -4,-7 0.0019 1 -2.0 MINOR ENSMUSG00000018761 Mpdu1 ENSMUST00000155200 ENSMUSP00000117715 TRANSLATION protein_coding stop - 3 148.0 0.0 2.83 0.0 49.7 4.0 -4,-7 0.0037 2 -2.0 MINOR ENSMUSG00000018761 Mpdu1 ENSMUST00000153217 - NO_TRANSLATION retained_intron ENSMUSG00000018761 Mpdu1 ENSMUST00000129224 ENSMUSP00000120001 TRANSLATION protein_coding start - 3 197.0 0.0 1.816 0.0 49.5 2.0 -4,-7 0.0019 2 -2.0 MINOR ENSMUSG00000018761 Mpdu1 ENSMUST00000018905 ENSMUSP00000018905 TRANSLATION protein_coding - CCDS24903.1 1 247.0 0.0 6.16 9.5 75.8 8.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000018761 Mpdu1 ENSMUST00000139155 - NO_TRANSLATION retained_intron ENSMUSG00000018761 Mpdu1 ENSMUST00000149764 - NO_TRANSLATION retained_intron ENSMUSG00000018761 Mpdu1 ENSMUST00000137288 - NO_TRANSLATION retained_intron ENSMUSG00000018761 Mpdu1 ENSMUST00000148242 ENSMUSP00000133074 TRANSLATION nonsense_mediated_decay - - 1 120.0 0.0 1.75 0.0 49.5 2.0 -4,-7 0.0019 2 -2.0 MINOR ENSMUSG00000020537 Drg2 ENSMUST00000147745 - NO_TRANSLATION retained_intron ENSMUSG00000020537 Drg2 ENSMUST00000138713 - NO_TRANSLATION retained_intron ENSMUSG00000020537 Drg2 ENSMUST00000155731 - NO_TRANSLATION retained_intron ENSMUSG00000020537 Drg2 ENSMUST00000018568 ENSMUSP00000018568 TRANSLATION protein_coding - CCDS24791.1 1 364.0 18.0 8.96 32.8 311.2 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000020537 Drg2 ENSMUST00000136484 - NO_TRANSLATION retained_intron ENSMUSG00000047759 Hs3st3a1 ENSMUST00000058652 ENSMUSP00000055930 TRANSLATION protein_coding - CCDS24840.1 1 393.0 21.0 1.6 0.4 154.4 0.0 -2,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000020826 Nos2 ENSMUST00000214397 ENSMUSP00000150558 TRANSLATION protein_coding - - 5 1143.0 80.0 19.09 1.1 1100.8 0.0 -4,0 0.6409 5 14.048 ALTERNATIVE:2 ENSMUSG00000020826 Nos2 ENSMUST00000208783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020826 Nos2 ENSMUST00000018610 ENSMUSP00000018610 TRANSLATION protein_coding - CCDS25115.1 1 1144.0 80.0 19.09 3.1 1100.8 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:2 ENSMUSG00000034201 Gas2l1 ENSMUST00000056649 ENSMUSP00000050275 TRANSLATION protein_coding - CCDS36101.1 5 678.0 4.0 2.08 4.6 168.9 0.0 -4,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000034201 Gas2l1 ENSMUST00000037146 ENSMUSP00000043709 TRANSLATION protein_coding - CCDS48745.1 1 344.0 4.0 2.08 0.0 168.9 0.0 -4,-2 0.2322 5 16.0 MINOR ENSMUSG00000034201 Gas2l1 ENSMUST00000156196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034201 Gas2l1 ENSMUST00000109895 ENSMUSP00000105521 TRANSLATION protein_coding - CCDS36101.1 1 678.0 4.0 2.08 4.6 168.9 0.0 -4,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000034201 Gas2l1 ENSMUST00000151936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034201 Gas2l1 ENSMUST00000152257 ENSMUSP00000121993 TRANSLATION protein_coding stop - 2 195.0 0.0 0.48 0.0 57.8 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000034201 Gas2l1 ENSMUST00000122886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040373 Cacng5 ENSMUST00000106742 ENSMUSP00000102353 TRANSLATION protein_coding - CCDS25572.1 1 275.0 0.0 1.56 21.1 81.6 2.0 -2,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000040373 Cacng5 ENSMUST00000039071 ENSMUSP00000047888 TRANSLATION protein_coding - CCDS25572.1 1 275.0 0.0 1.56 21.1 81.6 2.0 -2,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000078922 Tgtp1 ENSMUST00000146439 ENSMUSP00000123089 TRANSLATION protein_coding stop - 2 132.0 9.0 1.198 0.0 188.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000078922 Tgtp1 ENSMUST00000132745 ENSMUSP00000150328 TRANSLATION protein_coding stop - 5 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000078922 Tgtp1 ENSMUST00000068063 ENSMUSP00000069914 TRANSLATION protein_coding - CCDS24593.1 1 415.0 14.0 1.998 0.3 585.2 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000020612 Prkar1a ENSMUST00000155532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020612 Prkar1a ENSMUST00000106676 ENSMUSP00000102287 TRANSLATION protein_coding - - 2 171.0 1.0 3.75 0.0 58.2 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000020612 Prkar1a ENSMUST00000049527 ENSMUSP00000056500 TRANSLATION protein_coding - CCDS25583.1 1 381.0 24.0 8.75 34.7 199.9 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000020612 Prkar1a ENSMUST00000106677 ENSMUSP00000102288 TRANSLATION protein_coding - CCDS25583.1 5 381.0 24.0 8.75 34.7 199.9 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000020612 Prkar1a ENSMUST00000123354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069769 Msi2 ENSMUST00000092794 ENSMUSP00000090470 TRANSLATION protein_coding - CCDS56796.1 1 346.0 0.0 5.925 14.8 117.8 0.0 -4,-5 1.0 7 14.32 MINOR ENSMUSG00000069769 Msi2 ENSMUST00000138790 - NO_TRANSLATION retained_intron ENSMUSG00000069769 Msi2 ENSMUST00000144699 ENSMUSP00000119684 TRANSLATION protein_coding stop - 3 113.0 0.0 3.5 0.0 64.2 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000069769 Msi2 ENSMUST00000107908 ENSMUSP00000103541 TRANSLATION protein_coding - CCDS48882.1 5 158.0 0.0 3.175 0.0 64.2 0.0 -4,-5 0.0058 4 3.282 MINOR ENSMUSG00000069769 Msi2 ENSMUST00000107909 ENSMUSP00000103542 TRANSLATION protein_coding - - 1 328.0 0.0 5.925 24.8 117.8 0.0 -4,-5 0.9505 7 16.0 PRINCIPAL:1 ENSMUSG00000069769 Msi2 ENSMUST00000126293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069769 Msi2 ENSMUST00000148013 - NO_TRANSLATION retained_intron ENSMUSG00000070438 Or5af2 ENSMUST00000082220 ENSMUSP00000080852 TRANSLATION protein_coding - CCDS24748.1 - 308.0 0.0 1.0 7.4 174.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000070438 Or5af2 ENSMUST00000217506 ENSMUSP00000150529 TRANSLATION protein_coding - CCDS24748.1 5 308.0 0.0 1.0 7.4 174.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000078153 Psme2b ENSMUST00000104958 ENSMUSP00000100564 TRANSLATION protein_coding - CCDS78934.1 - 239.0 0.0 0.6 23.9 264.7 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038046 Mrm3 ENSMUST00000155526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038046 Mrm3 ENSMUST00000040577 ENSMUSP00000042882 TRANSLATION protein_coding - CCDS48852.1 1 418.0 18.0 1.24 5.2 78.5 0.0 -1,3 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000038046 Mrm3 ENSMUST00000125463 - NO_TRANSLATION retained_intron ENSMUSG00000038615 Nfe2l1 ENSMUST00000134951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038615 Nfe2l1 ENSMUST00000126949 ENSMUSP00000120512 TRANSLATION protein_coding stop - 2 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038615 Nfe2l1 ENSMUST00000167149 ENSMUSP00000128527 TRANSLATION protein_coding - CCDS25304.1 1 741.0 0.0 2.1 7.9 63.5 0.0 -3,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000038615 Nfe2l1 ENSMUST00000167110 ENSMUSP00000127804 TRANSLATION protein_coding - CCDS48894.1 2 583.0 0.0 2.1 1.8 63.5 0.0 -4,-5 0.4624 1 12.232 MINOR ENSMUSG00000038615 Nfe2l1 ENSMUST00000135836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038615 Nfe2l1 ENSMUST00000107659 ENSMUSP00000103286 TRANSLATION protein_coding - - 1 742.0 0.0 1.1 0.0 61.0 0.0 -3,-5 0.2179 2 8.91 MINOR ENSMUSG00000038615 Nfe2l1 ENSMUST00000107657 ENSMUSP00000103284 TRANSLATION protein_coding - CCDS25304.1 5 741.0 0.0 2.1 7.9 63.5 0.0 -3,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000038615 Nfe2l1 ENSMUST00000169828 ENSMUSP00000131585 TRANSLATION protein_coding - CCDS48893.1 2 453.0 0.0 1.6 0.0 63.5 0.0 -4,-5 0.1385 1 10.572 MINOR ENSMUSG00000038615 Nfe2l1 ENSMUST00000081775 ENSMUSP00000080467 TRANSLATION protein_coding - CCDS25304.1 1 741.0 0.0 2.1 7.9 63.5 0.0 -3,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000038615 Nfe2l1 ENSMUST00000142065 ENSMUSP00000121423 TRANSLATION protein_coding stop - 2 152.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038615 Nfe2l1 ENSMUST00000107658 ENSMUSP00000103285 TRANSLATION protein_coding - CCDS25304.1 1 741.0 0.0 2.1 7.9 63.5 0.0 -3,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000038615 Nfe2l1 ENSMUST00000140138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019312 Grb7 ENSMUST00000019456 ENSMUSP00000019456 TRANSLATION protein_coding - CCDS25351.1 1 535.0 0.0 9.8 10.2 247.5 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000019312 Grb7 ENSMUST00000129034 - NO_TRANSLATION retained_intron ENSMUSG00000019312 Grb7 ENSMUST00000156328 - NO_TRANSLATION retained_intron ENSMUSG00000019312 Grb7 ENSMUST00000133419 - NO_TRANSLATION retained_intron ENSMUSG00000019312 Grb7 ENSMUST00000132771 ENSMUSP00000119926 TRANSLATION protein_coding stop - 3 138.0 0.0 1.0 0.0 21.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019312 Grb7 ENSMUST00000127914 - NO_TRANSLATION retained_intron ENSMUSG00000001095 Slc13a2 ENSMUST00000001122 ENSMUSP00000001122 TRANSLATION protein_coding - CCDS25103.1 1 586.0 0.0 6.58 8.8 527.6 0.0 2,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000001751 Naglu ENSMUST00000140735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001751 Naglu ENSMUST00000138409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001751 Naglu ENSMUST00000001802 ENSMUSP00000001802 TRANSLATION protein_coding - CCDS25444.1 1 739.0 5.0 5.75 0.4 830.4 0.0 4,-1 1.0 15 17.0 PRINCIPAL:1 ENSMUSG00000058807 Or2t49 ENSMUST00000081743 ENSMUSP00000080440 TRANSLATION protein_coding - CCDS56773.2 - 324.0 0.0 1.0 7.0 145.1 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058807 Or2t49 ENSMUST00000170501 ENSMUSP00000132693 TRANSLATION protein_coding - - - 318.0 0.0 1.0 1.3 145.1 6.0 -4,-7 0.3175 - 12.1 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000167856 ENSMUSP00000128487 TRANSLATION protein_coding - - 5 1642.0 15.0 13.014 0.0 401.0 0.0 -4,-6 0.0272 39 7.602 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000000645 ENSMUSP00000000645 TRANSLATION protein_coding - - 5 2036.0 15.0 14.634 7.6 472.5 0.0 -4,-5 0.766 55 14.842 ALTERNATIVE:1 ENSMUSG00000000631 Myo18a ENSMUST00000108376 ENSMUSP00000104013 TRANSLATION protein_coding - - 5 1998.0 15.0 13.834 1.0 411.7 0.0 -4,-5 0.1326 55 11.24 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000130627 ENSMUSP00000119839 TRANSLATION protein_coding - - 5 2062.0 15.0 14.884 1.0 476.4 0.0 -4,-5 0.3102 55 13.34 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000092884 ENSMUSP00000090560 TRANSLATION protein_coding - - 5 1704.0 15.0 14.634 3.1 440.2 0.0 -4,-5 0.1659 45 11.478 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000100794 ENSMUSP00000098358 TRANSLATION protein_coding - CCDS78997.1 1 1700.0 15.0 14.634 3.1 436.2 0.0 -4,-5 0.2775 45 11.478 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000102488 ENSMUSP00000099546 TRANSLATION protein_coding - CCDS25085.1 5 2035.0 15.0 14.634 7.6 476.4 0.0 -4,-5 0.9415 55 14.842 ALTERNATIVE:1 ENSMUSG00000000631 Myo18a ENSMUST00000168348 ENSMUSP00000130696 TRANSLATION protein_coding - CCDS70253.1 1 2083.0 15.0 14.884 4.8 476.4 0.0 -4,-5 0.8282 55 14.492 ALTERNATIVE:1 ENSMUSG00000000631 Myo18a ENSMUST00000134196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000631 Myo18a ENSMUST00000164334 ENSMUSP00000131771 TRANSLATION protein_coding - - 5 1719.0 15.0 14.634 1.7 440.2 0.0 -4,-5 0.1495 45 11.054 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000130956 - NO_TRANSLATION retained_intron ENSMUSG00000000631 Myo18a ENSMUST00000100795 - NO_TRANSLATION retained_intron ENSMUSG00000000631 Myo18a ENSMUST00000169105 ENSMUSP00000132149 TRANSLATION protein_coding - CCDS70252.1 1 2047.0 15.0 14.884 6.9 476.4 0.0 -4,-5 1.0 55 15.128 PRINCIPAL:4 ENSMUSG00000000631 Myo18a ENSMUST00000164315 ENSMUSP00000129084 TRANSLATION protein_coding stop - 3 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.007 - -2.0 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000108375 ENSMUSP00000104012 TRANSLATION protein_coding - - 5 2050.0 15.0 14.634 7.6 476.4 0.0 -4,-5 0.8339 55 14.842 ALTERNATIVE:1 ENSMUSG00000000631 Myo18a ENSMUST00000135045 - NO_TRANSLATION retained_intron ENSMUSG00000000631 Myo18a ENSMUST00000172303 ENSMUSP00000129098 TRANSLATION protein_coding - CCDS83849.1 1 1722.0 15.0 15.214 0.7 437.1 0.0 -4,-5 0.2566 45 12.0 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000151373 ENSMUSP00000123256 TRANSLATION protein_coding stop - 5 307.0 7.0 0.25 0.0 0.0 0.0 -4,-5 0.001 6 -2.0 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000154892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000631 Myo18a ENSMUST00000142571 - NO_TRANSLATION retained_intron ENSMUSG00000000631 Myo18a ENSMUST00000100443 - NO_TRANSLATION retained_intron ENSMUSG00000000631 Myo18a ENSMUST00000092887 ENSMUSP00000090563 TRANSLATION protein_coding - CCDS25085.1 1 2035.0 15.0 14.634 7.6 476.4 0.0 -4,-5 0.9415 55 14.842 ALTERNATIVE:1 ENSMUSG00000000631 Myo18a ENSMUST00000135375 ENSMUSP00000117044 TRANSLATION protein_coding start - 5 501.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0029 4 -2.0 MINOR ENSMUSG00000000631 Myo18a ENSMUST00000130305 ENSMUSP00000119574 TRANSLATION protein_coding - - 5 1716.0 15.0 14.884 0.0 440.2 0.0 -4,-5 0.0812 45 11.34 MINOR ENSMUSG00000020870 Cdc34b ENSMUST00000021240 ENSMUSP00000021240 TRANSLATION protein_coding - - - 237.0 0.0 1.0 0.0 144.1 0.0 -4,-6 0.4994 - 12.0 PRINCIPAL:1 ENSMUSG00000020870 Cdc34b ENSMUST00000188741 ENSMUSP00000139570 TRANSLATION protein_coding stop - - 233.0 0.0 1.0 7.2 144.1 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000042032 Mat2b ENSMUST00000101347 ENSMUSP00000098901 TRANSLATION protein_coding - CCDS56767.1 1 323.0 29.0 6.33 24.5 293.8 0.0 -4,-5 0.9781 13 17.588 ALTERNATIVE:1 ENSMUSG00000042032 Mat2b ENSMUST00000040167 ENSMUSP00000048222 TRANSLATION protein_coding - CCDS24547.1 1 334.0 29.0 6.33 27.2 293.8 0.0 -4,-6 1.0 14 18.0 PRINCIPAL:3 ENSMUSG00000042032 Mat2b ENSMUST00000135617 - NO_TRANSLATION retained_intron ENSMUSG00000042032 Mat2b ENSMUST00000141830 ENSMUSP00000123878 TRANSLATION nonsense_mediated_decay - - 3 102.0 11.0 1.0 0.0 31.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000042032 Mat2b ENSMUST00000156867 - NO_TRANSLATION retained_intron ENSMUSG00000042032 Mat2b ENSMUST00000109307 - NO_TRANSLATION retained_intron ENSMUSG00000042032 Mat2b ENSMUST00000137797 - NO_TRANSLATION retained_intron ENSMUSG00000044807 Zfp354c ENSMUST00000109135 ENSMUSP00000104763 TRANSLATION protein_coding - CCDS24637.1 1 560.0 44.0 0.8 1.1 299.3 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000044807 Zfp354c ENSMUST00000139465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044807 Zfp354c ENSMUST00000136333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044807 Zfp354c ENSMUST00000000632 ENSMUSP00000000632 TRANSLATION protein_coding - CCDS24637.1 1 560.0 44.0 0.8 1.1 299.3 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000107573 Or2y1d ENSMUST00000216641 ENSMUSP00000149032 TRANSLATION protein_coding - CCDS24608.1 5 311.0 0.0 1.0 11.4 167.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000107573 Or2y1d ENSMUST00000217595 ENSMUSP00000149222 TRANSLATION protein_coding - CCDS24608.1 5 311.0 0.0 1.0 11.4 167.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000107573 Or2y1d ENSMUST00000203369 ENSMUSP00000145461 TRANSLATION protein_coding - CCDS24608.1 - 311.0 0.0 1.0 11.4 167.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035775 Krt20 ENSMUST00000017743 ENSMUSP00000017743 TRANSLATION protein_coding - CCDS25381.1 1 431.0 0.0 4.15 6.3 326.8 0.0 -4,0 1.0 19 14.0 PRINCIPAL:1 ENSMUSG00000020485 Supt4a ENSMUST00000152700 ENSMUSP00000118619 TRANSLATION nonsense_mediated_decay - - 1 104.0 4.0 1.95 0.0 60.5 0.0 -4,-6 0.0007 1 -2.0 MINOR ENSMUSG00000020485 Supt4a ENSMUST00000141169 ENSMUSP00000117762 TRANSLATION nonsense_mediated_decay - - 1 87.0 4.0 1.75 0.0 60.7 0.0 -4,-6 0.0008 1 -2.0 MINOR ENSMUSG00000020485 Supt4a ENSMUST00000093955 ENSMUSP00000091487 TRANSLATION protein_coding - CCDS36270.1 1 117.0 4.0 3.5 28.9 112.3 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000025579 Gaa ENSMUST00000138510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025579 Gaa ENSMUST00000026666 ENSMUSP00000026666 TRANSLATION protein_coding - CCDS25713.1 1 953.0 4.0 17.15 5.4 759.7 2.0 -4,-5 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000025579 Gaa ENSMUST00000143288 ENSMUSP00000121984 TRANSLATION protein_coding start - 2 207.0 2.0 5.0 0.0 236.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025579 Gaa ENSMUST00000106258 ENSMUSP00000101865 TRANSLATION protein_coding - - 1 231.0 0.0 1.44 0.0 128.0 2.0 -4,-5 0.0004 8 0.0 MINOR ENSMUSG00000025579 Gaa ENSMUST00000150562 ENSMUSP00000115128 TRANSLATION protein_coding start - 3 106.0 0.0 2.0 0.0 96.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000025579 Gaa ENSMUST00000132706 ENSMUSP00000119702 TRANSLATION protein_coding start/stop - 2 272.0 1.0 6.98 0.0 225.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025579 Gaa ENSMUST00000106259 ENSMUSP00000101866 TRANSLATION protein_coding - CCDS25713.1 1 953.0 4.0 17.15 5.4 759.7 2.0 -4,-5 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000025579 Gaa ENSMUST00000128753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040594 Ranbp17 ENSMUST00000154808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040594 Ranbp17 ENSMUST00000129179 ENSMUSP00000137898 TRANSLATION nonsense_mediated_decay - - 1 576.0 0.0 1.616 0.0 45.0 0.0 -4,-6 0.0583 6 -2.0 MINOR ENSMUSG00000040594 Ranbp17 ENSMUST00000207401 ENSMUSP00000147123 TRANSLATION protein_coding start/stop - 5 298.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 3 -2.0 MINOR ENSMUSG00000040594 Ranbp17 ENSMUST00000147751 ENSMUSP00000118519 TRANSLATION protein_coding stop - 3 210.0 0.0 1.466 0.0 45.0 0.0 -4,-7 0.0178 1 -2.0 MINOR ENSMUSG00000040594 Ranbp17 ENSMUST00000102815 ENSMUSP00000099879 TRANSLATION protein_coding - CCDS24534.1 1 1088.0 0.0 1.616 8.1 45.0 0.0 -4,-6 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000040594 Ranbp17 ENSMUST00000037522 ENSMUSP00000035840 TRANSLATION protein_coding - - 1 516.0 0.0 1.616 0.0 45.0 0.0 -4,-6 0.058 4 12.0 MINOR ENSMUSG00000075510 Fam187a ENSMUST00000100369 ENSMUSP00000097938 TRANSLATION protein_coding - CCDS48949.1 - 417.0 0.0 0.0 0.4 29.6 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045176 Borcs6 ENSMUST00000051888 ENSMUSP00000059143 TRANSLATION protein_coding - CCDS36190.1 - 360.0 0.0 0.0 5.4 168.2 0.0 -4,-5 1.0 8 8.0 PRINCIPAL:1 ENSMUSG00000020268 Lyrm7 ENSMUST00000144164 ENSMUSP00000120778 TRANSLATION protein_coding - CCDS36154.2 2 104.0 0.0 3.33 0.0 38.7 0.0 -4,0 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000020268 Lyrm7 ENSMUST00000135853 - NO_TRANSLATION retained_intron ENSMUSG00000020268 Lyrm7 ENSMUST00000148070 ENSMUSP00000118373 TRANSLATION nonsense_mediated_decay - CCDS36154.2 1 104.0 0.0 3.33 0.0 38.7 0.0 -4,0 1.0 3 -2.0 MINOR ENSMUSG00000020268 Lyrm7 ENSMUST00000141703 ENSMUSP00000121259 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 1.83 0.0 35.9 0.0 -4,-1 0.0231 - -2.0 MINOR ENSMUSG00000020268 Lyrm7 ENSMUST00000127887 - NO_TRANSLATION retained_intron ENSMUSG00000020268 Lyrm7 ENSMUST00000124351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049396 Gemin4 ENSMUST00000102500 ENSMUSP00000099558 TRANSLATION protein_coding - CCDS25061.1 1 1058.0 0.0 0.0 12.5 0.0 0.0 -4,-5 1.0 13 3.0 PRINCIPAL:1 ENSMUSG00000049396 Gemin4 ENSMUST00000143822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048498 Cd300e ENSMUST00000062787 ENSMUSP00000054883 TRANSLATION protein_coding - CCDS25618.1 1 196.0 0.0 1.2 0.0 60.3 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050628 Ubald2 ENSMUST00000057676 ENSMUSP00000058894 TRANSLATION protein_coding - CCDS25666.1 1 164.0 0.0 1.75 21.3 34.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000050628 Ubald2 ENSMUST00000144310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048616 Nog ENSMUST00000061728 ENSMUSP00000061427 TRANSLATION protein_coding - CCDS25236.1 - 232.0 0.0 0.8 11.8 340.2 0.0 0,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000020383 Il13 ENSMUST00000020650 ENSMUSP00000020650 TRANSLATION protein_coding - CCDS24683.1 1 131.0 0.0 2.6 6.3 188.2 0.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020387 Jade2 ENSMUST00000020655 ENSMUSP00000020655 TRANSLATION protein_coding - CCDS24662.1 1 829.0 12.0 2.0 9.2 181.6 0.0 -4,-5 1.0 6 20.946 PRINCIPAL:1 ENSMUSG00000020387 Jade2 ENSMUST00000109091 ENSMUSP00000104719 TRANSLATION protein_coding - CCDS24662.1 1 829.0 12.0 2.0 9.2 181.6 0.0 -4,-5 1.0 6 20.946 PRINCIPAL:1 ENSMUSG00000020387 Jade2 ENSMUST00000109090 ENSMUSP00000104718 TRANSLATION protein_coding - - 1 576.0 12.0 2.0 0.0 182.5 0.0 -4,-5 0.0393 3 18.0 MINOR ENSMUSG00000020387 Jade2 ENSMUST00000151277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017417 Plxdc1 ENSMUST00000107565 ENSMUSP00000103191 TRANSLATION protein_coding - CCDS48897.1 1 507.0 0.0 0.0 6.4 23.1 1.0 3,-3 0.8783 5 4.052 ALTERNATIVE:1 ENSMUSG00000017417 Plxdc1 ENSMUST00000141708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017417 Plxdc1 ENSMUST00000107564 ENSMUSP00000103190 TRANSLATION protein_coding - - 2 111.0 0.0 0.0 0.0 0.0 0.0 3,-3 0.0011 - 0.0 MINOR ENSMUSG00000017417 Plxdc1 ENSMUST00000017561 ENSMUSP00000017561 TRANSLATION protein_coding - CCDS25333.1 1 500.0 0.0 0.0 8.9 23.1 1.0 3,-2 1.0 6 5.0 PRINCIPAL:3 ENSMUSG00000047702 Or2y16 ENSMUST00000215226 ENSMUSP00000150160 TRANSLATION protein_coding - CCDS24609.1 5 311.0 0.0 1.0 8.2 156.2 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047702 Or2y16 ENSMUST00000055584 ENSMUSP00000053834 TRANSLATION protein_coding - CCDS24609.1 - 311.0 0.0 1.0 8.2 156.2 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041920 Slc16a6 ENSMUST00000070152 ENSMUSP00000065628 TRANSLATION protein_coding - CCDS25580.1 1 607.0 0.0 2.93 0.4 119.8 19.0 -4,-6 0.3031 2 12.0 MINOR ENSMUSG00000041920 Slc16a6 ENSMUST00000032206 ENSMUSP00000032206 TRANSLATION protein_coding stop - 2 113.0 0.0 1.6 0.0 0.0 3.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000041920 Slc16a6 ENSMUST00000168740 ENSMUSP00000125950 TRANSLATION protein_coding stop - 2 141.0 0.0 1.6 0.0 0.0 7.0 -4,-1 0.0023 - -2.0 MINOR ENSMUSG00000041920 Slc16a6 ENSMUST00000129901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041920 Slc16a6 ENSMUST00000070872 ENSMUSP00000067423 TRANSLATION protein_coding - CCDS36360.1 1 523.0 0.0 2.93 11.4 119.8 19.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000000724 Cryba1 ENSMUST00000078623 ENSMUSP00000077693 TRANSLATION protein_coding - CCDS25084.1 1 215.0 0.0 4.3 19.0 203.4 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000000724 Cryba1 ENSMUST00000124178 - NO_TRANSLATION retained_intron ENSMUSG00000017446 C1qtnf1 ENSMUST00000017590 ENSMUSP00000017590 TRANSLATION protein_coding - CCDS25703.1 1 281.0 0.0 1.0 5.3 164.8 0.0 2,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000017446 C1qtnf1 ENSMUST00000124861 ENSMUSP00000122759 TRANSLATION protein_coding stop - 3 49.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.002 - -2.0 MINOR ENSMUSG00000017446 C1qtnf1 ENSMUST00000133558 ENSMUSP00000117467 TRANSLATION protein_coding stop - 3 51.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.002 - -2.0 MINOR ENSMUSG00000017446 C1qtnf1 ENSMUST00000106286 ENSMUSP00000101893 TRANSLATION protein_coding - CCDS25703.1 1 281.0 0.0 1.0 5.3 164.8 0.0 2,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000020680 Taf15 ENSMUST00000021018 ENSMUSP00000021018 TRANSLATION protein_coding - CCDS25168.1 1 557.0 4.0 4.84 0.0 70.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000020680 Taf15 ENSMUST00000126134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020680 Taf15 ENSMUST00000152405 - NO_TRANSLATION retained_intron ENSMUSG00000020680 Taf15 ENSMUST00000134185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020680 Taf15 ENSMUST00000133170 ENSMUSP00000119836 TRANSLATION protein_coding start - 1 324.0 4.0 4.84 0.0 70.3 0.0 -4,-5 0.0402 5 -2.0 MINOR ENSMUSG00000070330 Tmem235 ENSMUST00000093905 ENSMUSP00000091432 TRANSLATION protein_coding - CCDS36383.1 5 211.0 0.0 1.055 0.0 155.3 0.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000000381 Wap ENSMUST00000127341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000381 Wap ENSMUST00000102910 ENSMUSP00000099974 TRANSLATION protein_coding - CCDS24424.1 1 134.0 0.0 0.0 0.1 39.5 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000000381 Wap ENSMUST00000141868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000982 Ccl3 ENSMUST00000001008 ENSMUSP00000001008 TRANSLATION protein_coding - CCDS36255.1 1 92.0 0.0 2.05 18.7 76.5 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037992 Rara ENSMUST00000139399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037992 Rara ENSMUST00000164748 ENSMUSP00000129791 TRANSLATION protein_coding - CCDS36304.1 1 462.0 52.0 6.8 7.3 193.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000037992 Rara ENSMUST00000107473 ENSMUSP00000103097 TRANSLATION protein_coding - CCDS48905.1 1 459.0 52.0 6.8 4.1 193.1 0.0 -4,-5 0.8477 - 14.984 ALTERNATIVE:2 ENSMUSG00000037992 Rara ENSMUST00000107475 ENSMUSP00000103099 TRANSLATION protein_coding - CCDS36304.1 1 462.0 52.0 6.8 7.3 193.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000037992 Rara ENSMUST00000068133 ENSMUSP00000069744 TRANSLATION protein_coding - CCDS36304.1 1 462.0 52.0 6.8 7.3 193.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000037992 Rara ENSMUST00000107474 ENSMUSP00000103098 TRANSLATION protein_coding - CCDS36304.1 5 462.0 52.0 6.8 7.3 193.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000037992 Rara ENSMUST00000147985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034706 Dnai2 ENSMUST00000130692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034706 Dnai2 ENSMUST00000151053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034706 Dnai2 ENSMUST00000069325 ENSMUSP00000065787 TRANSLATION protein_coding - CCDS36366.1 5 623.0 0.0 8.8 0.0 0.0 0.0 -4,-5 0.992 7 6.0 PRINCIPAL:1 ENSMUSG00000034706 Dnai2 ENSMUST00000144872 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034706 Dnai2 ENSMUST00000136403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034706 Dnai2 ENSMUST00000092469 ENSMUSP00000090126 TRANSLATION protein_coding - CCDS36366.1 5 623.0 0.0 8.8 0.0 0.0 0.0 -4,-5 0.992 7 6.0 PRINCIPAL:1 ENSMUSG00000034706 Dnai2 ENSMUST00000141762 ENSMUSP00000114700 TRANSLATION protein_coding stop - 5 562.0 0.0 8.4 0.0 0.0 0.0 -4,-5 0.0384 7 -2.0 MINOR ENSMUSG00000001313 Rnd2 ENSMUST00000134980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001313 Rnd2 ENSMUST00000153185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001313 Rnd2 ENSMUST00000001347 ENSMUSP00000001347 TRANSLATION protein_coding - CCDS25473.1 1 227.0 21.0 5.0 23.0 132.6 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000039294 Cybc1 ENSMUST00000147490 ENSMUSP00000117829 TRANSLATION protein_coding stop - 2 131.0 0.0 4.0 0.0 215.4 2.0 -4,-2 0.0012 2 -2.0 MINOR ENSMUSG00000039294 Cybc1 ENSMUST00000137299 ENSMUSP00000120541 TRANSLATION protein_coding stop - 3 150.0 0.0 4.66 0.0 250.5 2.0 -4,-2 0.0007 2 -2.0 MINOR ENSMUSG00000039294 Cybc1 ENSMUST00000133535 - NO_TRANSLATION retained_intron ENSMUSG00000039294 Cybc1 ENSMUST00000106115 ENSMUSP00000101721 TRANSLATION protein_coding - CCDS25771.1 1 187.0 0.0 5.46 17.1 280.5 2.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000039294 Cybc1 ENSMUST00000149351 - NO_TRANSLATION retained_intron ENSMUSG00000039294 Cybc1 ENSMUST00000156214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039294 Cybc1 ENSMUST00000169393 ENSMUSP00000127260 TRANSLATION protein_coding stop - 3 116.0 0.0 1.25 0.0 55.8 2.0 -4,-2 0.0015 1 -2.0 MINOR ENSMUSG00000039294 Cybc1 ENSMUST00000038709 ENSMUSP00000042277 TRANSLATION protein_coding - CCDS25771.1 1 187.0 0.0 5.46 17.1 280.5 2.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000005043 Sgsh ENSMUST00000005173 ENSMUSP00000005173 TRANSLATION protein_coding - CCDS36384.1 1 502.0 5.0 10.25 4.9 197.3 0.0 2,-2 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000005043 Sgsh ENSMUST00000133507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005043 Sgsh ENSMUST00000141540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005043 Sgsh ENSMUST00000136523 ENSMUSP00000115587 TRANSLATION nonsense_mediated_decay - - 5 117.0 0.0 0.5 0.0 0.0 0.0 1,-2 0.0 - -2.0 MINOR ENSMUSG00000005043 Sgsh ENSMUST00000126132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005043 Sgsh ENSMUST00000100172 ENSMUSP00000097748 TRANSLATION protein_coding - - 1 422.0 3.0 6.45 0.0 116.0 0.0 2,-2 0.0019 4 4.122 MINOR ENSMUSG00000018334 Ksr1 ENSMUST00000208969 ENSMUSP00000146527 TRANSLATION protein_coding start/stop - 5 432.0 8.0 3.875 0.0 64.5 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000018334 Ksr1 ENSMUST00000209031 ENSMUSP00000146491 TRANSLATION protein_coding start - 3 65.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018334 Ksr1 ENSMUST00000129463 ENSMUSP00000114538 TRANSLATION protein_coding stop - 2 80.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000018334 Ksr1 ENSMUST00000018478 ENSMUSP00000018478 TRANSLATION protein_coding - CCDS25117.1 5 873.0 25.0 11.225 0.4 291.3 0.0 -4,-5 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000018334 Ksr1 ENSMUST00000226282 ENSMUSP00000154385 TRANSLATION protein_coding - - - 818.0 25.0 9.225 0.0 161.4 0.0 -4,-6 0.0116 14 7.998 MINOR ENSMUSG00000018334 Ksr1 ENSMUST00000141409 ENSMUSP00000116407 TRANSLATION protein_coding stop - 2 205.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000018334 Ksr1 ENSMUST00000108264 ENSMUSP00000103899 TRANSLATION protein_coding - - 5 637.0 19.0 5.975 0.0 166.0 0.0 -4,-5 0.0 15 1.998 MINOR ENSMUSG00000047773 Ankfn1 ENSMUST00000128717 ENSMUSP00000121290 TRANSLATION protein_coding - - 5 763.0 0.0 1.466 3.1 73.0 0.0 -4,-2 0.9703 2 9.802 MINOR ENSMUSG00000047773 Ankfn1 ENSMUST00000207350 ENSMUSP00000146500 TRANSLATION nonsense_mediated_decay - - 5 48.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000047773 Ankfn1 ENSMUST00000238273 ENSMUSP00000158789 TRANSLATION protein_coding - - - 1286.0 0.0 3.066 0.0 73.0 0.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000047773 Ankfn1 ENSMUST00000207171 - NO_TRANSLATION retained_intron ENSMUSG00000047773 Ankfn1 ENSMUST00000208932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047773 Ankfn1 ENSMUST00000207815 ENSMUSP00000146987 TRANSLATION protein_coding start - 5 1083.0 0.0 3.066 0.0 73.0 0.0 -4,-2 0.4015 4 -2.0 MINOR ENSMUSG00000047773 Ankfn1 ENSMUST00000050983 ENSMUSP00000049776 TRANSLATION protein_coding - CCDS25237.1 1 403.0 0.0 1.6 0.0 0.0 0.0 -4,-6 0.0276 2 3.066 MINOR ENSMUSG00000047773 Ankfn1 ENSMUST00000169201 ENSMUSP00000132133 TRANSLATION protein_coding start - 2 743.0 0.0 1.466 0.0 73.0 0.0 -4,-1 0.0991 2 -2.0 MINOR ENSMUSG00000033196 Myh2 ENSMUST00000170159 ENSMUSP00000129544 TRANSLATION protein_coding - CCDS24854.2 5 1942.0 16.0 36.43 24.9 1544.3 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000033196 Myh2 ENSMUST00000018641 ENSMUSP00000018641 TRANSLATION protein_coding - CCDS24854.2 5 1942.0 16.0 36.43 24.9 1544.3 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000033196 Myh2 ENSMUST00000124337 - NO_TRANSLATION retained_intron ENSMUSG00000057050 Or1e1f ENSMUST00000215020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057050 Or1e1f ENSMUST00000213134 ENSMUSP00000150369 TRANSLATION protein_coding - CCDS25021.1 5 315.0 0.0 1.0 11.5 201.1 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057050 Or1e1f ENSMUST00000121280 ENSMUSP00000113870 TRANSLATION protein_coding - CCDS25021.1 - 315.0 0.0 1.0 11.5 201.1 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057050 Or1e1f ENSMUST00000216291 ENSMUSP00000150172 TRANSLATION protein_coding - CCDS25021.1 5 315.0 0.0 1.0 11.5 201.1 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020913 Krt24 ENSMUST00000017255 ENSMUSP00000017255 TRANSLATION protein_coding - CCDS36305.1 1 512.0 0.0 4.05 0.0 360.2 0.0 -4,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000002058 Unc119 ENSMUST00000108295 ENSMUSP00000103930 TRANSLATION protein_coding - CCDS83853.1 3 262.0 0.0 4.0 0.0 238.9 0.0 -4,-6 0.1039 6 10.968 MINOR ENSMUSG00000002058 Unc119 ENSMUST00000155471 - NO_TRANSLATION retained_intron ENSMUSG00000002058 Unc119 ENSMUST00000154700 - NO_TRANSLATION retained_intron ENSMUSG00000002058 Unc119 ENSMUST00000149161 - NO_TRANSLATION retained_intron ENSMUSG00000002058 Unc119 ENSMUST00000002127 ENSMUSP00000002127 TRANSLATION protein_coding - CCDS25101.1 1 240.0 0.0 4.0 8.5 256.1 0.0 -4,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000002058 Unc119 ENSMUST00000125720 - NO_TRANSLATION retained_intron ENSMUSG00000002058 Unc119 ENSMUST00000100755 ENSMUSP00000098318 TRANSLATION protein_coding - CCDS83854.1 2 175.0 0.0 3.6 0.0 256.1 0.0 -4,-5 0.0614 3 11.202 MINOR ENSMUSG00000069793 Slfn9 ENSMUST00000138797 ENSMUSP00000115273 TRANSLATION protein_coding stop - 5 641.0 8.0 0.5 0.0 55.4 0.0 -4,-5 0.0949 8 -2.0 MINOR ENSMUSG00000069793 Slfn9 ENSMUST00000092840 ENSMUSP00000090515 TRANSLATION protein_coding - CCDS25154.1 5 910.0 9.0 0.5 0.0 55.4 0.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000069793 Slfn9 ENSMUST00000038211 ENSMUSP00000044435 TRANSLATION protein_coding - CCDS25154.1 1 910.0 9.0 0.5 0.0 55.4 0.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000078974 Sec61g ENSMUST00000178855 ENSMUSP00000137362 TRANSLATION protein_coding - CCDS48755.1 1 68.0 0.0 2.0 36.9 55.8 2.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000078974 Sec61g ENSMUST00000138695 - NO_TRANSLATION retained_intron ENSMUSG00000078974 Sec61g ENSMUST00000109643 ENSMUSP00000105271 TRANSLATION protein_coding - CCDS48755.1 1 68.0 0.0 2.0 36.9 55.8 2.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000078974 Sec61g ENSMUST00000109641 ENSMUSP00000105269 TRANSLATION protein_coding - CCDS48755.1 2 68.0 0.0 2.0 36.9 55.8 2.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000078974 Sec61g ENSMUST00000166950 ENSMUSP00000132348 TRANSLATION protein_coding - CCDS48756.1 1 100.0 0.0 2.0 0.0 55.8 2.0 -4,0 0.1824 1 12.0 MINOR ENSMUSG00000078974 Sec61g ENSMUST00000109642 ENSMUSP00000105270 TRANSLATION protein_coding - CCDS48755.1 2 68.0 0.0 2.0 36.9 55.8 2.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000078974 Sec61g ENSMUST00000131439 - NO_TRANSLATION retained_intron ENSMUSG00000020458 Rtn4 ENSMUST00000170731 ENSMUSP00000126413 TRANSLATION protein_coding - CCDS24499.1 1 356.0 0.0 4.4 0.3 161.3 5.0 -4,-5 0.3071 10 12.0 MINOR ENSMUSG00000020458 Rtn4 ENSMUST00000060992 ENSMUSP00000053754 TRANSLATION protein_coding - CCDS24503.1 1 199.0 0.0 4.4 19.5 161.3 5.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000020458 Rtn4 ENSMUST00000078830 ENSMUSP00000077875 TRANSLATION protein_coding - CCDS24499.1 1 356.0 0.0 4.4 0.3 161.3 5.0 -4,-5 0.3071 10 12.0 MINOR ENSMUSG00000020458 Rtn4 ENSMUST00000141719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020458 Rtn4 ENSMUST00000102842 ENSMUSP00000099906 TRANSLATION protein_coding - CCDS24500.1 1 375.0 0.0 4.4 0.3 161.3 5.0 -4,-5 0.3053 9 12.0 MINOR ENSMUSG00000020458 Rtn4 ENSMUST00000156217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020458 Rtn4 ENSMUST00000126162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020458 Rtn4 ENSMUST00000125735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020458 Rtn4 ENSMUST00000102843 ENSMUSP00000099907 TRANSLATION protein_coding - CCDS24501.1 1 1162.0 0.0 4.4 0.0 161.3 5.0 -4,-5 0.4482 36 12.0 MINOR ENSMUSG00000020458 Rtn4 ENSMUST00000102841 ENSMUSP00000099905 TRANSLATION protein_coding - CCDS24502.1 1 1046.0 0.0 4.4 0.0 161.3 5.0 -3,-5 0.4377 32 12.0 MINOR ENSMUSG00000078851 H2ac25 ENSMUST00000108817 ENSMUSP00000104445 TRANSLATION protein_coding - CCDS24755.1 - 130.0 0.0 1.0 12.5 136.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043284 Tmem11 ENSMUST00000155031 ENSMUSP00000122930 TRANSLATION protein_coding stop - 2 125.0 0.0 0.0 0.0 190.9 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000043284 Tmem11 ENSMUST00000168218 ENSMUSP00000128654 TRANSLATION protein_coding - CCDS48815.1 2 176.0 0.0 0.0 2.6 257.4 0.0 -4,-6 0.2496 3 6.28 MINOR ENSMUSG00000043284 Tmem11 ENSMUST00000062677 ENSMUSP00000059494 TRANSLATION protein_coding - CCDS24801.1 1 190.0 0.0 0.0 23.7 257.4 0.0 -4,-2 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000057890 Or1x6 ENSMUST00000073543 ENSMUSP00000144756 TRANSLATION protein_coding - CCDS83801.1 - 313.0 0.0 1.0 8.1 199.4 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048728 Zfp454 ENSMUST00000125749 ENSMUSP00000122658 TRANSLATION protein_coding stop - 5 122.0 0.0 1.5 0.0 85.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000048728 Zfp454 ENSMUST00000126718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048728 Zfp454 ENSMUST00000136599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048728 Zfp454 ENSMUST00000050595 ENSMUSP00000061824 TRANSLATION protein_coding - CCDS24639.1 1 536.0 48.0 2.5 0.0 344.5 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000048728 Zfp454 ENSMUST00000163301 ENSMUSP00000129125 TRANSLATION protein_coding - CCDS24639.1 3 536.0 48.0 2.5 0.0 344.5 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000048728 Zfp454 ENSMUST00000109131 ENSMUSP00000104759 TRANSLATION protein_coding - - 1 425.0 48.0 1.0 0.0 258.9 0.0 -4,-5 0.0594 - 9.264 MINOR ENSMUSG00000051481 Krtap31-2 ENSMUST00000058761 ENSMUSP00000055035 TRANSLATION protein_coding - CCDS36328.1 - 177.0 0.0 0.0 0.0 47.7 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000018401 Mtmr4 ENSMUST00000092802 ENSMUSP00000090478 TRANSLATION protein_coding - - 1 1133.0 7.0 6.673 0.0 470.0 0.0 -4,-5 0.0308 7 14.046 MINOR ENSMUSG00000018401 Mtmr4 ENSMUST00000119628 ENSMUSP00000112902 TRANSLATION protein_coding - CCDS25214.1 1 1190.0 7.0 7.473 8.2 509.2 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000018401 Mtmr4 ENSMUST00000123105 ENSMUSP00000119489 TRANSLATION protein_coding stop - 5 70.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018401 Mtmr4 ENSMUST00000103179 ENSMUSP00000099468 TRANSLATION protein_coding - CCDS25214.1 1 1190.0 7.0 7.473 8.2 509.2 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000018401 Mtmr4 ENSMUST00000134216 ENSMUSP00000119660 TRANSLATION protein_coding stop - 2 204.0 0.0 1.475 0.0 26.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000018401 Mtmr4 ENSMUST00000146871 ENSMUSP00000119446 TRANSLATION protein_coding stop - 3 97.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032921 Odf4 ENSMUST00000038932 ENSMUSP00000040050 TRANSLATION protein_coding - CCDS24872.1 1 290.0 0.0 0.0 0.1 26.1 4.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000032921 Odf4 ENSMUST00000156828 ENSMUSP00000133569 TRANSLATION nonsense_mediated_decay start - 3 140.0 0.0 0.0 0.0 0.0 2.0 -4,-1 0.0051 - -2.0 MINOR ENSMUSG00000032921 Odf4 ENSMUST00000125134 ENSMUSP00000133636 TRANSLATION protein_coding - - 3 177.0 0.0 0.0 0.0 0.0 3.0 -4,-6 0.0017 - 0.0 MINOR ENSMUSG00000032921 Odf4 ENSMUST00000130271 ENSMUSP00000134383 TRANSLATION nonsense_mediated_decay - - 5 178.0 0.0 0.0 0.0 0.0 3.0 -4,-6 0.0017 - -2.0 MINOR ENSMUSG00000041278 Ttc1 ENSMUST00000109278 ENSMUSP00000104901 TRANSLATION protein_coding - - 5 250.0 0.0 3.75 1.1 13.1 0.0 -4,-5 0.1189 8 10.035 MINOR ENSMUSG00000041278 Ttc1 ENSMUST00000147984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041278 Ttc1 ENSMUST00000048578 ENSMUSP00000040779 TRANSLATION protein_coding - CCDS24561.1 1 292.0 0.0 4.75 10.3 13.1 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000020690 Efcab3 ENSMUST00000137086 ENSMUSP00000114580 TRANSLATION protein_coding stop - 1 359.0 9.0 1.998 0.0 61.6 0.0 -4,-5 0.0319 - -2.0 MINOR ENSMUSG00000020690 Efcab3 ENSMUST00000154543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020690 Efcab3 ENSMUST00000021029 ENSMUSP00000021029 TRANSLATION protein_coding - CCDS36355.1 1 432.0 5.0 1.5 7.3 40.7 0.0 -4,-6 1.0 - 13.808 PRINCIPAL:1 ENSMUSG00000020690 Efcab3 ENSMUST00000136876 ENSMUSP00000120875 TRANSLATION protein_coding start/stop - 5 222.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000076433 Cep295nl ENSMUST00000249111 ENSMUSP00000159586 TRANSLATION protein_coding stop - - 270.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0425 - -2.0 MINOR ENSMUSG00000076433 Cep295nl ENSMUST00000168100 ENSMUSP00000128122 TRANSLATION protein_coding - CCDS25700.1 - 533.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8968 - 0.0 PRINCIPAL:1 ENSMUSG00000076433 Cep295nl ENSMUST00000103024 ENSMUSP00000099313 TRANSLATION protein_coding - CCDS25700.1 1 533.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8968 - 0.0 PRINCIPAL:1 ENSMUSG00000078258 Gm11564 ENSMUST00000105055 ENSMUSP00000100676 TRANSLATION protein_coding - CCDS70306.1 - 201.0 0.0 0.0 0.7 106.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000020456 Ogdh ENSMUST00000125929 - NO_TRANSLATION retained_intron ENSMUSG00000020456 Ogdh ENSMUST00000003461 ENSMUSP00000003461 TRANSLATION protein_coding - CCDS36106.1 1 1023.0 19.0 12.922 30.9 813.6 0.0 -4,0 0.9875 48 17.664 PRINCIPAL:3 ENSMUSG00000020456 Ogdh ENSMUST00000101554 ENSMUSP00000099090 TRANSLATION protein_coding - CCDS36106.1 1 1023.0 19.0 12.922 30.9 813.6 0.0 -4,0 0.9875 48 17.664 PRINCIPAL:3 ENSMUSG00000020456 Ogdh ENSMUST00000081894 ENSMUSP00000080569 TRANSLATION protein_coding - CCDS56759.1 1 1019.0 19.0 13.09 29.8 813.6 0.0 -4,0 1.0 47 17.852 ALTERNATIVE:1 ENSMUSG00000020456 Ogdh ENSMUST00000140765 ENSMUSP00000117323 TRANSLATION protein_coding stop - 2 123.0 0.0 0.0 0.0 69.9 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000020456 Ogdh ENSMUST00000093350 ENSMUSP00000091041 TRANSLATION protein_coding - CCDS56758.1 1 1034.0 19.0 12.84 17.7 813.6 0.0 -4,0 0.9029 48 15.738 MINOR ENSMUSG00000020456 Ogdh ENSMUST00000135124 ENSMUSP00000117505 TRANSLATION protein_coding stop - 3 84.0 0.0 0.0 0.0 69.2 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000034940 Synrg ENSMUST00000183714 ENSMUSP00000139103 TRANSLATION protein_coding - - 5 1216.0 4.0 2.35 0.0 0.0 0.0 -4,-7 0.2972 35 10.0 ALTERNATIVE:2 ENSMUSG00000034940 Synrg ENSMUST00000148901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034940 Synrg ENSMUST00000183456 ENSMUSP00000138969 TRANSLATION protein_coding - - 5 1329.0 4.0 2.35 0.0 0.0 0.0 -4,-7 0.3834 35 10.0 ALTERNATIVE:2 ENSMUSG00000034940 Synrg ENSMUST00000138676 ENSMUSP00000117709 TRANSLATION protein_coding start/stop - 5 256.0 0.0 2.35 0.0 0.0 0.0 -4,-5 0.0622 7 -2.0 MINOR ENSMUSG00000034940 Synrg ENSMUST00000184239 - NO_TRANSLATION retained_intron ENSMUSG00000034940 Synrg ENSMUST00000132887 - NO_TRANSLATION retained_intron ENSMUSG00000034940 Synrg ENSMUST00000142966 - NO_TRANSLATION retained_intron ENSMUSG00000034940 Synrg ENSMUST00000049714 ENSMUSP00000059000 TRANSLATION protein_coding - - 5 1306.0 4.0 2.35 1.1 0.0 0.0 -3,-1 0.8432 35 11.0 PRINCIPAL:2 ENSMUSG00000034940 Synrg ENSMUST00000092834 ENSMUSP00000090510 TRANSLATION protein_coding - CCDS25181.1 1 1138.0 4.0 2.35 0.0 0.0 0.0 -4,-7 0.5353 33 10.0 ALTERNATIVE:2 ENSMUSG00000001507 Itga3 ENSMUST00000140342 - NO_TRANSLATION retained_intron ENSMUSG00000001507 Itga3 ENSMUST00000141693 - NO_TRANSLATION retained_intron ENSMUSG00000001507 Itga3 ENSMUST00000107739 ENSMUSP00000103368 TRANSLATION protein_coding - CCDS83877.1 1 1022.0 19.0 7.42675 0.0 407.7 2.0 -4,-6 0.2935 17 17.682 MINOR ENSMUSG00000001507 Itga3 ENSMUST00000001548 ENSMUSP00000001548 TRANSLATION protein_coding - CCDS25271.1 1 1053.0 19.0 7.58675 7.2 407.7 2.0 3,-2 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000001507 Itga3 ENSMUST00000145671 ENSMUSP00000115970 TRANSLATION protein_coding start/stop - 3 183.0 0.0 1.04375 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000001507 Itga3 ENSMUST00000120375 ENSMUSP00000113556 TRANSLATION protein_coding - CCDS83878.1 1 1068.0 19.0 7.58675 2.8 407.7 2.0 3,-2 0.699 18 18.58 MINOR ENSMUSG00000060030 Or2w3b ENSMUST00000075607 ENSMUSP00000075034 TRANSLATION protein_coding - CCDS24742.1 - 327.0 0.0 1.0 1.6 170.7 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060030 Or2w3b ENSMUST00000215513 ENSMUSP00000150575 TRANSLATION protein_coding - CCDS24742.1 5 327.0 0.0 1.0 1.6 170.7 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060030 Or2w3b ENSMUST00000216196 ENSMUSP00000150027 TRANSLATION protein_coding - CCDS24742.1 5 327.0 0.0 1.0 1.6 170.7 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000046417 Lrrc75a ENSMUST00000143262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046417 Lrrc75a ENSMUST00000128705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046417 Lrrc75a ENSMUST00000057194 ENSMUSP00000062489 TRANSLATION protein_coding - CCDS24828.1 1 339.0 0.0 1.0 2.6 0.0 0.0 -4,-7 1.0 8 7.0 PRINCIPAL:1 ENSMUSG00000048721 Fndc9 ENSMUST00000060185 ENSMUSP00000060509 TRANSLATION protein_coding - CCDS24574.1 1 226.0 0.0 0.0 7.2 0.0 0.0 -4,-5 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000046697 Enpp7 ENSMUST00000106273 ENSMUSP00000101880 TRANSLATION protein_coding - - 5 439.0 8.0 4.398 0.4 254.9 0.0 4,-1 0.8556 4 14.0 PRINCIPAL:2 ENSMUSG00000046697 Enpp7 ENSMUST00000092373 ENSMUSP00000090027 TRANSLATION protein_coding - - 2 446.0 8.0 4.2 0.0 254.9 0.0 4,-1 0.342 4 13.604 ALTERNATIVE:2 ENSMUSG00000018634 Crhr1 ENSMUST00000093925 ENSMUSP00000091455 TRANSLATION protein_coding - CCDS25526.1 1 415.0 0.0 10.1 16.2 324.3 0.0 -1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020718 Polg2 ENSMUST00000155107 ENSMUSP00000118975 TRANSLATION nonsense_mediated_decay - - 1 126.0 0.0 1.066 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000020718 Polg2 ENSMUST00000134029 ENSMUSP00000122755 TRANSLATION nonsense_mediated_decay - - 5 126.0 0.0 1.066 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020718 Polg2 ENSMUST00000126201 ENSMUSP00000116583 TRANSLATION nonsense_mediated_decay - - 5 162.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000020718 Polg2 ENSMUST00000127061 ENSMUSP00000117441 TRANSLATION nonsense_mediated_decay - - 1 170.0 0.0 2.05445 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000020718 Polg2 ENSMUST00000021060 ENSMUSP00000021060 TRANSLATION protein_coding - CCDS25561.1 1 459.0 0.0 9.41 0.4 38.4 0.0 -4,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000020718 Polg2 ENSMUST00000142590 - NO_TRANSLATION retained_intron ENSMUSG00000001583 Tnk1 ENSMUST00000156507 ENSMUSP00000120585 TRANSLATION protein_coding start/stop - 3 186.0 0.0 2.33 0.0 58.7 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000001583 Tnk1 ENSMUST00000108626 ENSMUSP00000104266 TRANSLATION protein_coding - - 1 434.0 19.0 4.93 0.0 244.2 0.0 -4,-7 0.045 - 11.138 MINOR ENSMUSG00000001583 Tnk1 ENSMUST00000125571 ENSMUSP00000118490 TRANSLATION protein_coding stop - 3 268.0 19.0 2.21 0.0 129.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000001583 Tnk1 ENSMUST00000001626 ENSMUSP00000001626 TRANSLATION protein_coding - CCDS24917.1 1 666.0 19.0 6.36 0.1 244.2 0.0 -4,-7 0.6488 - 14.0 ALTERNATIVE:2 ENSMUSG00000001583 Tnk1 ENSMUST00000108628 ENSMUSP00000104268 TRANSLATION protein_coding - - 5 671.0 19.0 6.36 1.3 244.2 0.0 -4,-7 0.7559 - 15.0 PRINCIPAL:4 ENSMUSG00000049321 Zfp2 ENSMUST00000150903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049321 Zfp2 ENSMUST00000116378 ENSMUSP00000112079 TRANSLATION protein_coding - CCDS36148.1 1 459.0 52.0 1.0 4.7 340.5 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000049321 Zfp2 ENSMUST00000151027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049321 Zfp2 ENSMUST00000109128 ENSMUSP00000104756 TRANSLATION protein_coding - CCDS36148.1 1 459.0 52.0 1.0 4.7 340.5 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000049321 Zfp2 ENSMUST00000109129 ENSMUSP00000104757 TRANSLATION protein_coding - CCDS36148.1 1 459.0 52.0 1.0 4.7 340.5 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000049321 Zfp2 ENSMUST00000124748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057778 Cyb5d2 ENSMUST00000079681 ENSMUSP00000078623 TRANSLATION protein_coding - CCDS24990.2 1 263.0 0.0 4.75 3.8 40.2 0.0 1,-3 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000057778 Cyb5d2 ENSMUST00000141141 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057778 Cyb5d2 ENSMUST00000156294 ENSMUSP00000131961 TRANSLATION protein_coding - - 1 110.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 0.498 MINOR ENSMUSG00000057778 Cyb5d2 ENSMUST00000169476 - NO_TRANSLATION retained_intron ENSMUSG00000020364 Zfp354a ENSMUST00000020628 ENSMUSP00000020628 TRANSLATION protein_coding - CCDS24648.1 1 572.0 52.0 1.1 0.1 364.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000020364 Zfp354a ENSMUST00000109122 ENSMUSP00000104750 TRANSLATION protein_coding - CCDS83802.1 1 571.0 52.0 1.1 0.0 364.4 0.0 -4,-7 0.846 - 14.0 ALTERNATIVE:2 ENSMUSG00000020364 Zfp354a ENSMUST00000156914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020364 Zfp354a ENSMUST00000102766 ENSMUSP00000099827 TRANSLATION protein_coding - CCDS24648.1 1 572.0 52.0 1.1 0.1 364.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000020364 Zfp354a ENSMUST00000109119 ENSMUSP00000104747 TRANSLATION protein_coding - CCDS83803.1 5 573.0 52.0 1.1 0.4 360.9 0.0 -4,-5 0.6627 - 14.0 ALTERNATIVE:2 ENSMUSG00000000093 Tbx2 ENSMUST00000000095 ENSMUSP00000000095 TRANSLATION protein_coding - CCDS36266.1 1 711.0 0.0 3.15 10.0 359.8 0.0 -2,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000020681 Ace ENSMUST00000001964 ENSMUSP00000001964 TRANSLATION protein_coding - CCDS25544.1 1 732.0 4.0 12.0 5.8 873.6 1.0 2,-2 0.5158 19 5.0 MINOR ENSMUSG00000020681 Ace ENSMUST00000132280 ENSMUSP00000119826 TRANSLATION protein_coding start - 1 1016.0 8.0 20.0 0.0 1546.1 0.0 -4,-5 0.095 22 -2.0 MINOR ENSMUSG00000020681 Ace ENSMUST00000001963 ENSMUSP00000001963 TRANSLATION protein_coding - CCDS25543.1 1 1312.0 8.0 24.33 1.1 1731.1 1.0 3,-1 1.0 30 18.042 PRINCIPAL:1 ENSMUSG00000020681 Ace ENSMUST00000151657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093485 Gm20708 ENSMUST00000132298 ENSMUSP00000135368 TRANSLATION protein_coding,RT - - 2 155.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.5852 - -2.0 PRINCIPAL:1 ENSMUSG00000036216 Leap2 ENSMUST00000036045 ENSMUSP00000044166 TRANSLATION protein_coding - CCDS36150.1 1 76.0 0.0 1.33 12.8 140.1 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039989 Cbx4 ENSMUST00000145058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039989 Cbx4 ENSMUST00000026665 ENSMUSP00000026665 TRANSLATION protein_coding - CCDS25710.1 1 551.0 0.0 2.6 4.4 104.6 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000000276 Dgke ENSMUST00000152772 ENSMUSP00000116277 TRANSLATION nonsense_mediated_decay - - 5 406.0 18.0 0.0 0.1 152.9 0.0 -4,-6 0.0062 14 -2.0 MINOR ENSMUSG00000000276 Dgke ENSMUST00000107894 ENSMUSP00000103526 TRANSLATION protein_coding - CCDS25234.1 5 564.0 18.0 0.0 7.8 277.0 0.0 -4,-6 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000000276 Dgke ENSMUST00000000285 ENSMUSP00000000285 TRANSLATION protein_coding - CCDS25234.1 1 564.0 18.0 0.0 7.8 277.0 0.0 -4,-6 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000058163 Gm5431 ENSMUST00000109210 ENSMUSP00000104833 TRANSLATION protein_coding - CCDS36141.2 1 566.0 14.0 0.8 0.0 573.6 0.0 -4,-7 0.2395 - 6.0 MINOR ENSMUSG00000058163 Gm5431 ENSMUST00000109209 ENSMUSP00000104832 TRANSLATION protein_coding - CCDS36141.2 5 566.0 14.0 0.8 0.0 573.6 0.0 -4,-7 0.2395 - 6.0 MINOR ENSMUSG00000058163 Gm5431 ENSMUST00000109212 ENSMUSP00000104835 TRANSLATION protein_coding - - 5 844.0 28.0 0.8 0.4 914.3 0.0 -4,-5 0.9494 1 18.0 PRINCIPAL:1 ENSMUSG00000044502 Bod1 ENSMUST00000109415 ENSMUSP00000105042 TRANSLATION protein_coding - CCDS24513.1 2 173.0 0.0 2.6 1.0 92.8 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000044502 Bod1 ENSMUST00000058060 ENSMUSP00000056417 TRANSLATION protein_coding - CCDS24513.1 1 173.0 0.0 2.6 1.0 92.8 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000006058 Snf8 ENSMUST00000145749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006058 Snf8 ENSMUST00000156394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006058 Snf8 ENSMUST00000150946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006058 Snf8 ENSMUST00000006217 ENSMUSP00000006217 TRANSLATION protein_coding - CCDS25288.1 1 258.0 0.0 6.0 30.5 246.4 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000006058 Snf8 ENSMUST00000156524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006058 Snf8 ENSMUST00000107700 ENSMUSP00000103328 TRANSLATION protein_coding - - 2 233.0 0.0 5.25 4.0 209.3 0.0 -4,-6 0.0664 4 8.682 MINOR ENSMUSG00000051510 Mafg ENSMUST00000106181 ENSMUSP00000101787 TRANSLATION protein_coding - CCDS25748.1 3 162.0 0.0 1.0 34.9 115.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000051510 Mafg ENSMUST00000106180 ENSMUSP00000101786 TRANSLATION protein_coding - CCDS25748.1 2 162.0 0.0 1.0 34.9 115.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000051510 Mafg ENSMUST00000128498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051510 Mafg ENSMUST00000058162 ENSMUSP00000053899 TRANSLATION protein_coding - CCDS25748.1 1 162.0 0.0 1.0 34.9 115.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000051510 Mafg ENSMUST00000106182 ENSMUSP00000101788 TRANSLATION protein_coding - CCDS25748.1 2 162.0 0.0 1.0 34.9 115.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000060216 Arrb2 ENSMUST00000128748 ENSMUSP00000134349 TRANSLATION nonsense_mediated_decay - - 5 37.0 0.0 0.198 0.0 0.0 0.0 -3,-1 0.0 - -2.0 MINOR ENSMUSG00000060216 Arrb2 ENSMUST00000125441 - NO_TRANSLATION retained_intron ENSMUSG00000060216 Arrb2 ENSMUST00000102563 ENSMUSP00000099623 TRANSLATION protein_coding - CCDS24946.1 1 410.0 12.0 10.438 20.4 231.9 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000060216 Arrb2 ENSMUST00000143232 - NO_TRANSLATION retained_intron ENSMUSG00000060216 Arrb2 ENSMUST00000079056 ENSMUSP00000078065 TRANSLATION protein_coding - CCDS70226.1 1 421.0 12.0 10.108 3.9 231.9 0.0 -4,-6 0.3018 9 17.936 MINOR ENSMUSG00000060216 Arrb2 ENSMUST00000124943 ENSMUSP00000136978 TRANSLATION protein_coding stop - 3 83.0 6.0 2.58 0.0 66.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000060216 Arrb2 ENSMUST00000150076 ENSMUSP00000136601 TRANSLATION protein_coding stop - 3 27.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060216 Arrb2 ENSMUST00000108568 ENSMUSP00000104208 TRANSLATION protein_coding - CCDS70226.1 1 421.0 12.0 10.108 3.9 231.9 0.0 -4,-6 0.3018 9 17.936 MINOR ENSMUSG00000060216 Arrb2 ENSMUST00000124112 - NO_TRANSLATION retained_intron ENSMUSG00000060216 Arrb2 ENSMUST00000144454 - NO_TRANSLATION retained_intron ENSMUSG00000060216 Arrb2 ENSMUST00000084954 ENSMUSP00000082018 TRANSLATION protein_coding - - 5 406.0 12.0 9.608 1.0 192.0 0.0 -4,-5 0.0536 9 13.944 MINOR ENSMUSG00000060216 Arrb2 ENSMUST00000138006 - NO_TRANSLATION retained_intron ENSMUSG00000060216 Arrb2 ENSMUST00000102564 ENSMUSP00000099624 TRANSLATION protein_coding - CCDS24946.1 1 410.0 12.0 10.438 20.4 231.9 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000109737 Spem3 ENSMUST00000210714 ENSMUSP00000148194 TRANSLATION protein_coding - - 5 1251.0 0.0 1.75 0.0 33.5 0.0 -4,-7 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000093989 Rnasek ENSMUST00000125752 ENSMUSP00000135891 TRANSLATION nonsense_mediated_decay - - 2 35.0 0.0 0.75 0.0 0.0 0.0 -3,-5 0.0048 - -2.0 MINOR ENSMUSG00000093989 Rnasek ENSMUST00000141880 ENSMUSP00000135383 TRANSLATION protein_coding - - 2 71.0 0.0 1.75 0.0 0.0 1.0 -4,-7 0.0107 - 4.2 MINOR ENSMUSG00000093989 Rnasek ENSMUST00000040428 ENSMUSP00000048271 TRANSLATION protein_coding - CCDS36204.1 1 98.0 0.0 2.5 28.0 0.0 2.0 -1,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000025130 P4hb ENSMUST00000166620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025130 P4hb ENSMUST00000026122 ENSMUSP00000026122 TRANSLATION protein_coding - CCDS25742.1 1 509.0 8.0 10.05 3.9 359.2 0.0 3,-2 1.0 35 19.0 PRINCIPAL:1 ENSMUSG00000025130 P4hb ENSMUST00000168360 ENSMUSP00000128796 TRANSLATION protein_coding - - 3 165.0 4.0 3.05 0.0 103.3 0.0 3,-2 0.0004 12 3.0 MINOR ENSMUSG00000020467 Efemp1 ENSMUST00000020759 ENSMUSP00000020759 TRANSLATION protein_coding - CCDS48761.1 1 493.0 36.0 7.2 0.0 172.7 0.0 4,-1 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000020467 Efemp1 ENSMUST00000124103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020467 Efemp1 ENSMUST00000139713 ENSMUSP00000114757 TRANSLATION protein_coding start - 3 198.0 10.0 4.0 0.0 33.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020333 Acsl6 ENSMUST00000093106 ENSMUSP00000090795 TRANSLATION protein_coding - CCDS24696.1 1 697.0 25.0 11.425 12.8 393.3 2.0 -4,-6 1.0 32 14.85 ALTERNATIVE:1 ENSMUSG00000020333 Acsl6 ENSMUST00000138515 ENSMUSP00000117128 TRANSLATION protein_coding stop - 5 192.0 0.0 1.316 0.0 62.6 2.0 -4,-6 0.0015 9 -2.0 MINOR ENSMUSG00000020333 Acsl6 ENSMUST00000000145 ENSMUSP00000000145 TRANSLATION protein_coding - - 5 622.0 24.0 10.85 1.0 344.1 0.0 -4,-5 0.0373 30 10.032 MINOR ENSMUSG00000020333 Acsl6 ENSMUST00000101213 ENSMUSP00000098773 TRANSLATION protein_coding - CCDS24697.1 1 697.0 25.0 11.5 12.8 391.1 2.0 -4,-6 0.9933 33 15.0 PRINCIPAL:4 ENSMUSG00000020333 Acsl6 ENSMUST00000108904 ENSMUSP00000104532 TRANSLATION protein_coding - CCDS24694.1 1 722.0 25.0 11.5 10.7 391.1 2.0 -2,-5 0.8849 33 14.466 ALTERNATIVE:1 ENSMUSG00000020333 Acsl6 ENSMUST00000127731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020333 Acsl6 ENSMUST00000072178 ENSMUSP00000072040 TRANSLATION protein_coding - CCDS24696.1 5 697.0 25.0 11.425 12.8 393.3 2.0 -4,-6 1.0 32 14.85 ALTERNATIVE:1 ENSMUSG00000020333 Acsl6 ENSMUST00000101211 ENSMUSP00000098771 TRANSLATION protein_coding - CCDS24697.1 1 697.0 25.0 11.5 12.8 391.1 2.0 -4,-6 0.9933 33 15.0 PRINCIPAL:4 ENSMUSG00000020333 Acsl6 ENSMUST00000108905 ENSMUSP00000104533 TRANSLATION protein_coding - CCDS24695.1 1 722.0 25.0 11.425 10.7 393.3 2.0 -2,-5 0.8964 32 14.316 ALTERNATIVE:1 ENSMUSG00000020333 Acsl6 ENSMUST00000064690 ENSMUSP00000069844 TRANSLATION protein_coding - - 1 359.0 7.0 4.25 0.0 158.0 2.0 -4,-6 0.0 14 0.0 MINOR ENSMUSG00000020333 Acsl6 ENSMUST00000149403 ENSMUSP00000120540 TRANSLATION protein_coding stop - 5 139.0 0.0 0.866 0.0 0.0 2.0 -4,-6 0.0009 7 -2.0 MINOR ENSMUSG00000020333 Acsl6 ENSMUST00000156252 ENSMUSP00000119714 TRANSLATION protein_coding stop - 5 365.0 8.0 4.95 0.0 194.7 0.0 -4,-5 0.0 18 -2.0 MINOR ENSMUSG00000020333 Acsl6 ENSMUST00000139484 ENSMUSP00000120693 TRANSLATION protein_coding start - 3 126.0 5.0 3.0 0.0 94.6 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000020333 Acsl6 ENSMUST00000108899 ENSMUSP00000104527 TRANSLATION protein_coding - - 1 424.0 8.0 5.1 0.0 194.7 2.0 -4,-6 0.0 20 0.0 MINOR ENSMUSG00000020333 Acsl6 ENSMUST00000094194 ENSMUSP00000091746 TRANSLATION protein_coding - CCDS24696.1 5 697.0 25.0 11.425 12.8 393.3 2.0 -4,-6 1.0 32 14.85 ALTERNATIVE:1 ENSMUSG00000045942 BC049762 ENSMUST00000054226 ENSMUSP00000061848 TRANSLATION protein_coding - CCDS24650.1 1 163.0 0.0 1.0 0.1 0.0 0.0 -4,-7 0.1753 - 3.426 MINOR ENSMUSG00000045942 BC049762 ENSMUST00000065950 ENSMUSP00000071085 TRANSLATION protein_coding - CCDS24650.1 1 163.0 0.0 1.0 0.1 0.0 0.0 -4,-7 0.1753 - 3.426 MINOR ENSMUSG00000045942 BC049762 ENSMUST00000231433 ENSMUSP00000155926 TRANSLATION protein_coding - - - 219.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.6569 - 6.0 PRINCIPAL:1 ENSMUSG00000056427 Slit3 ENSMUST00000156571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056427 Slit3 ENSMUST00000153098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056427 Slit3 ENSMUST00000069837 ENSMUSP00000066857 TRANSLATION protein_coding - CCDS24542.1 1 1523.0 0.0 23.9 9.7 661.1 0.0 1,1 1.0 26 15.0 PRINCIPAL:1 ENSMUSG00000056427 Slit3 ENSMUST00000124438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018861 Fdxr ENSMUST00000139437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018861 Fdxr ENSMUST00000155130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018861 Fdxr ENSMUST00000021078 ENSMUSP00000021078 TRANSLATION protein_coding - CCDS25625.1 1 494.0 51.0 10.75 7.3 0.0 0.0 -3,0 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000018861 Fdxr ENSMUST00000147500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049659 Aftph ENSMUST00000177014 ENSMUSP00000135450 TRANSLATION nonsense_mediated_decay start - 2 685.0 0.0 1.1 0.0 73.2 0.0 -4,-5 0.0644 8 -2.0 MINOR ENSMUSG00000049659 Aftph ENSMUST00000035350 ENSMUSP00000036778 TRANSLATION protein_coding - CCDS24459.1 1 904.0 0.0 1.1 7.6 73.2 0.0 -4,-5 1.0 15 10.0 PRINCIPAL:4 ENSMUSG00000049659 Aftph ENSMUST00000177543 ENSMUSP00000134991 TRANSLATION protein_coding - CCDS56761.1 1 822.0 0.0 1.1 0.0 73.2 0.0 -4,-5 0.2769 12 8.0 MINOR ENSMUSG00000049659 Aftph ENSMUST00000134841 - NO_TRANSLATION retained_intron ENSMUSG00000049659 Aftph ENSMUST00000134517 - NO_TRANSLATION retained_intron ENSMUSG00000049659 Aftph ENSMUST00000176585 - NO_TRANSLATION retained_intron ENSMUSG00000049659 Aftph ENSMUST00000176782 ENSMUSP00000134791 TRANSLATION protein_coding start/stop - 3 292.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 4 -2.0 MINOR ENSMUSG00000049659 Aftph ENSMUST00000146722 ENSMUSP00000121612 TRANSLATION protein_coding - CCDS70146.1 5 931.0 0.0 1.1 7.6 73.2 0.0 -4,-5 0.9402 15 10.0 ALTERNATIVE:1 ENSMUSG00000049659 Aftph ENSMUST00000134897 - NO_TRANSLATION retained_intron ENSMUSG00000034164 Emid1 ENSMUST00000132196 - NO_TRANSLATION retained_intron ENSMUSG00000034164 Emid1 ENSMUST00000163299 ENSMUSP00000131391 TRANSLATION protein_coding - - 5 442.0 0.0 2.465 4.7 97.6 0.0 3,-2 0.7113 1 10.0 ALTERNATIVE:1 ENSMUSG00000034164 Emid1 ENSMUST00000156492 ENSMUSP00000124431 TRANSLATION nonsense_mediated_decay - - 5 157.0 0.0 0.0 0.0 57.6 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000034164 Emid1 ENSMUST00000062821 ENSMUSP00000061704 TRANSLATION protein_coding - CCDS24398.1 1 444.0 0.0 2.465 4.7 101.6 0.0 3,-2 1.0 1 10.0 PRINCIPAL:2 ENSMUSG00000034164 Emid1 ENSMUST00000138551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034164 Emid1 ENSMUST00000132328 ENSMUSP00000117779 TRANSLATION protein_coding start - 5 223.0 0.0 2.465 0.0 44.0 0.0 -4,-5 0.027 - -2.0 MINOR ENSMUSG00000034164 Emid1 ENSMUST00000153308 ENSMUSP00000125605 TRANSLATION nonsense_mediated_decay start - 3 55.0 0.0 1.065 0.0 39.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034164 Emid1 ENSMUST00000151906 ENSMUSP00000124014 TRANSLATION protein_coding start - 3 116.0 0.0 1.465 0.0 44.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050567 Maml1 ENSMUST00000135868 ENSMUSP00000118188 TRANSLATION protein_coding start - 1 585.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0037 3 -2.0 MINOR ENSMUSG00000050567 Maml1 ENSMUST00000059458 ENSMUSP00000059210 TRANSLATION protein_coding - CCDS24632.2 1 1020.0 0.0 1.0 1.8 92.6 0.0 -4,-2 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000000056 Narf ENSMUST00000154047 - NO_TRANSLATION retained_intron ENSMUSG00000000056 Narf ENSMUST00000103015 ENSMUSP00000099304 TRANSLATION protein_coding - CCDS25772.1 1 462.0 0.0 7.816 12.2 34.3 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000000056 Narf ENSMUST00000151088 - NO_TRANSLATION retained_intron ENSMUSG00000069718 Gm11563 ENSMUST00000092695 ENSMUSP00000090369 TRANSLATION protein_coding - CCDS48913.1 - 168.0 0.0 0.0 2.1 50.3 0.0 -4,-5 0.9955 - 7.0 PRINCIPAL:1 ENSMUSG00000020780 Srp68 ENSMUST00000021133 ENSMUSP00000021133 TRANSLATION protein_coding - CCDS25662.1 1 625.0 0.0 5.0 8.5 0.0 0.0 -4,-5 1.0 30 9.0 PRINCIPAL:1 ENSMUSG00000020780 Srp68 ENSMUST00000128808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020780 Srp68 ENSMUST00000127205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020780 Srp68 ENSMUST00000106425 ENSMUSP00000102033 TRANSLATION protein_coding - - 5 587.0 0.0 4.0 1.0 0.0 0.0 -4,-5 0.1085 28 4.002 MINOR ENSMUSG00000020911 Krt19 ENSMUST00000007317 ENSMUSP00000007317 TRANSLATION protein_coding - CCDS25411.1 1 403.0 0.0 4.35 5.8 395.7 0.0 -4,-7 1.0 25 14.0 PRINCIPAL:1 ENSMUSG00000020911 Krt19 ENSMUST00000125888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020911 Krt19 ENSMUST00000126460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037593 Rskr ENSMUST00000124730 - NO_TRANSLATION retained_intron ENSMUSG00000037593 Rskr ENSMUST00000136011 - NO_TRANSLATION retained_intron ENSMUSG00000037593 Rskr ENSMUST00000238934 ENSMUSP00000158919 TRANSLATION protein_coding - - - 406.0 6.0 5.43 2.2 195.3 0.0 -4,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000037593 Rskr ENSMUST00000046361 ENSMUSP00000038139 TRANSLATION protein_coding - - 5 278.0 6.0 4.08 0.0 131.6 0.0 -4,-2 0.0012 - 11.478 MINOR ENSMUSG00000037593 Rskr ENSMUST00000147549 - NO_TRANSLATION retained_intron ENSMUSG00000037593 Rskr ENSMUST00000122937 - NO_TRANSLATION retained_intron ENSMUSG00000037593 Rskr ENSMUST00000130947 - NO_TRANSLATION retained_intron ENSMUSG00000020160 Meis1 ENSMUST00000118661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020160 Meis1 ENSMUST00000068264 ENSMUSP00000069277 TRANSLATION protein_coding - CCDS56760.1 1 390.0 0.0 3.138 0.0 227.2 0.0 -4,-5 0.1936 3 12.0 MINOR ENSMUSG00000020160 Meis1 ENSMUST00000144988 ENSMUSP00000134969 TRANSLATION protein_coding - - 2 370.0 0.0 2.94 0.0 227.2 0.0 -4,-5 0.0115 2 11.604 MINOR ENSMUSG00000020160 Meis1 ENSMUST00000177357 ENSMUSP00000139074 TRANSLATION nonsense_mediated_decay start - 5 225.0 0.0 0.64 0.0 154.2 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000020160 Meis1 ENSMUST00000185131 ENSMUSP00000139219 TRANSLATION protein_coding - CCDS24453.1 1 465.0 0.0 3.138 27.9 227.2 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020160 Meis1 ENSMUST00000102878 ENSMUSP00000099942 TRANSLATION nonsense_mediated_decay - - 5 349.0 0.0 3.006 0.0 227.2 0.0 -4,-5 0.0211 2 -2.0 MINOR ENSMUSG00000020160 Meis1 ENSMUST00000177417 ENSMUSP00000135726 TRANSLATION protein_coding - - 5 385.0 0.0 3.138 0.0 227.2 0.0 -4,-5 0.03 3 12.0 MINOR ENSMUSG00000020160 Meis1 ENSMUST00000137300 - NO_TRANSLATION retained_intron ENSMUSG00000020160 Meis1 ENSMUST00000125722 - NO_TRANSLATION retained_intron ENSMUSG00000018293 Pfn1 ENSMUST00000108549 ENSMUSP00000104189 TRANSLATION protein_coding - - 2 112.0 0.0 2.66 0.0 67.2 0.0 -4,-5 0.0 7 8.256 MINOR ENSMUSG00000018293 Pfn1 ENSMUST00000177669 - NO_TRANSLATION retained_intron ENSMUSG00000018293 Pfn1 ENSMUST00000018437 ENSMUSP00000018437 TRANSLATION protein_coding - CCDS24960.1 1 140.0 0.0 3.66 33.8 94.8 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000018293 Pfn1 ENSMUST00000178254 ENSMUSP00000136219 TRANSLATION nonsense_mediated_decay - - 2 55.0 0.0 1.0 0.0 37.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000001103 Sebox ENSMUST00000001130 ENSMUSP00000001130 TRANSLATION protein_coding - CCDS25107.1 1 190.0 0.0 1.33 3.9 74.0 0.0 -4,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000001103 Sebox ENSMUST00000125670 ENSMUSP00000129606 TRANSLATION protein_coding - - 1 56.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000049491 Slc36a3 ENSMUST00000069816 ENSMUSP00000064960 TRANSLATION protein_coding - - 1 102.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000049491 Slc36a3 ENSMUST00000128244 ENSMUSP00000116073 TRANSLATION nonsense_mediated_decay - - 1 92.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000049491 Slc36a3 ENSMUST00000020502 ENSMUSP00000020502 TRANSLATION protein_coding - CCDS24708.1 1 477.0 0.0 5.95 0.1 215.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000051062 Fbll1 ENSMUST00000160726 ENSMUSP00000128889 TRANSLATION protein_coding - CCDS36128.1 - 314.0 14.0 1.0 0.0 354.6 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000059864 Or2y1g ENSMUST00000213323 ENSMUSP00000149358 TRANSLATION protein_coding - CCDS24603.1 5 311.0 0.0 1.0 9.3 164.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059864 Or2y1g ENSMUST00000217626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059864 Or2y1g ENSMUST00000078932 ENSMUSP00000077962 TRANSLATION protein_coding - CCDS24603.1 - 311.0 0.0 1.0 9.3 164.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034449 Dhrs11 ENSMUST00000151496 ENSMUSP00000122267 TRANSLATION nonsense_mediated_decay - - 3 50.0 8.0 1.0 0.0 32.9 0.0 -3,-1 0.0 1 -2.0 MINOR ENSMUSG00000034449 Dhrs11 ENSMUST00000047560 ENSMUSP00000043467 TRANSLATION protein_coding - CCDS36261.1 1 260.0 29.0 6.75 4.3 153.5 0.0 -3,0 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000035373 Ccl7 ENSMUST00000021011 ENSMUSP00000021011 TRANSLATION protein_coding - CCDS36245.1 1 97.0 0.0 2.0 9.1 69.3 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000017801 Mlx ENSMUST00000017945 ENSMUSP00000017945 TRANSLATION protein_coding - CCDS25447.1 1 298.0 0.0 1.396 6.9 58.5 0.0 -4,-5 0.4338 5 12.916 MINOR ENSMUSG00000017801 Mlx ENSMUST00000149597 ENSMUSP00000121600 TRANSLATION protein_coding stop - 3 127.0 0.0 0.798 0.0 26.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000017801 Mlx ENSMUST00000145187 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017801 Mlx ENSMUST00000149411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017801 Mlx ENSMUST00000143344 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017801 Mlx ENSMUST00000107302 ENSMUSP00000102923 TRANSLATION protein_coding - CCDS48935.1 1 244.0 0.0 1.396 26.8 58.5 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000017801 Mlx ENSMUST00000107303 ENSMUSP00000102924 TRANSLATION protein_coding - CCDS48936.1 1 214.0 0.0 1.396 9.4 58.5 0.0 -4,-5 0.4992 3 13.304 MINOR ENSMUSG00000069721 Krtap3-2 ENSMUST00000092699 ENSMUSP00000090373 TRANSLATION protein_coding - CCDS25386.1 - 99.0 0.0 0.0 11.0 158.9 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000046311 Zfp62 ENSMUST00000137061 ENSMUSP00000114147 TRANSLATION protein_coding stop - 3 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000046311 Zfp62 ENSMUST00000157023 - NO_TRANSLATION retained_intron ENSMUSG00000046311 Zfp62 ENSMUST00000128932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046311 Zfp62 ENSMUST00000150284 ENSMUSP00000121132 TRANSLATION protein_coding stop - 3 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0334 - -2.0 MINOR ENSMUSG00000046311 Zfp62 ENSMUST00000151228 ENSMUSP00000117774 TRANSLATION protein_coding stop - 3 195.0 10.0 1.4 0.0 60.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000046311 Zfp62 ENSMUST00000133150 ENSMUSP00000115576 TRANSLATION protein_coding stop - 1 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000046311 Zfp62 ENSMUST00000136691 ENSMUSP00000115849 TRANSLATION protein_coding stop - 3 80.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000046311 Zfp62 ENSMUST00000109197 ENSMUSP00000104820 TRANSLATION protein_coding - CCDS24601.1 1 907.0 104.0 2.0 0.0 533.7 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000046311 Zfp62 ENSMUST00000061757 ENSMUSP00000056226 TRANSLATION protein_coding - CCDS24601.1 1 907.0 104.0 2.0 0.0 533.7 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000046311 Zfp62 ENSMUST00000109198 ENSMUSP00000104821 TRANSLATION protein_coding - CCDS24601.1 1 907.0 104.0 2.0 0.0 533.7 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000046311 Zfp62 ENSMUST00000136539 ENSMUSP00000116045 TRANSLATION protein_coding stop - 1 893.0 104.0 2.0 0.0 533.7 0.0 -4,-5 0.2857 4 -2.0 MINOR ENSMUSG00000005417 Mprip ENSMUST00000066330 ENSMUSP00000071081 TRANSLATION protein_coding - - 5 2269.0 0.0 1.6 0.4 94.5 0.0 -4,-6 0.3901 66 8.0 ALTERNATIVE:2 ENSMUSG00000005417 Mprip ENSMUST00000108751 ENSMUSP00000104382 TRANSLATION protein_coding - - 1 986.0 0.0 1.6 0.0 94.5 0.0 -4,-6 0.2097 35 8.0 ALTERNATIVE:2 ENSMUSG00000005417 Mprip ENSMUST00000132620 ENSMUSP00000119422 TRANSLATION protein_coding start - 5 848.0 0.0 1.6 0.0 57.5 0.0 -4,-5 0.0578 34 -2.0 MINOR ENSMUSG00000005417 Mprip ENSMUST00000116371 ENSMUSP00000112072 TRANSLATION protein_coding - CCDS24775.1 1 1024.0 0.0 1.6 1.4 94.5 0.0 -4,-6 0.6781 39 9.0 ALTERNATIVE:2 ENSMUSG00000005417 Mprip ENSMUST00000156111 ENSMUSP00000114446 TRANSLATION protein_coding start - 1 498.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0038 19 -2.0 MINOR ENSMUSG00000005417 Mprip ENSMUST00000133861 ENSMUSP00000119562 TRANSLATION protein_coding start - 5 1010.0 0.0 1.6 0.0 57.5 0.0 -4,-5 0.0885 39 -2.0 MINOR ENSMUSG00000005417 Mprip ENSMUST00000153531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005417 Mprip ENSMUST00000138234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005417 Mprip ENSMUST00000072031 ENSMUSP00000071914 TRANSLATION protein_coding - CCDS24774.1 1 1037.0 0.0 1.6 1.4 94.5 0.0 -4,-6 1.0 39 9.0 PRINCIPAL:2 ENSMUSG00000039198 Ptchd3 ENSMUST00000036690 ENSMUSP00000035709 TRANSLATION protein_coding - CCDS49014.1 1 906.0 0.0 1.84 0.0 571.2 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000039198 Ptchd3 ENSMUST00000125199 - NO_TRANSLATION retained_intron ENSMUSG00000018363 Smurf2 ENSMUST00000103067 ENSMUSP00000099356 TRANSLATION protein_coding - - 5 735.0 0.0 14.8 4.2 487.3 0.0 -4,-2 0.2389 8 10.716 MINOR ENSMUSG00000018363 Smurf2 ENSMUST00000092517 ENSMUSP00000090177 TRANSLATION protein_coding - CCDS25564.1 1 748.0 0.0 15.3 17.4 505.0 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000018363 Smurf2 ENSMUST00000130688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018363 Smurf2 ENSMUST00000139297 ENSMUSP00000156224 TRANSLATION nonsense_mediated_decay - - 5 68.0 0.0 2.0 0.0 48.6 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000018363 Smurf2 ENSMUST00000144027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064044 Or2ak6 ENSMUST00000076965 ENSMUSP00000076232 TRANSLATION protein_coding - CCDS24740.1 - 306.0 0.0 1.0 2.0 156.2 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000064044 Or2ak6 ENSMUST00000215962 ENSMUSP00000150883 TRANSLATION protein_coding - CCDS24740.1 5 306.0 0.0 1.0 2.0 156.2 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000064044 Or2ak6 ENSMUST00000215238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072582 Ptrh2 ENSMUST00000108021 ENSMUSP00000103656 TRANSLATION protein_coding - CCDS48876.1 5 181.0 0.0 1.0 10.7 160.9 1.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000072582 Ptrh2 ENSMUST00000108022 ENSMUSP00000103657 TRANSLATION protein_coding - CCDS48876.1 1 181.0 0.0 1.0 10.7 160.9 1.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000051497 Kcnj16 ENSMUST00000178798 ENSMUSP00000137414 TRANSLATION protein_coding - CCDS25593.1 3 419.0 0.0 2.5 12.5 431.0 1.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000051497 Kcnj16 ENSMUST00000150902 ENSMUSP00000121758 TRANSLATION protein_coding stop - 3 66.0 0.0 0.5 0.0 25.6 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000051497 Kcnj16 ENSMUST00000106635 ENSMUSP00000102246 TRANSLATION protein_coding - CCDS25593.1 1 419.0 0.0 2.5 12.5 431.0 1.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000051497 Kcnj16 ENSMUST00000125692 ENSMUSP00000119921 TRANSLATION protein_coding stop - 3 103.0 0.0 1.5 0.0 90.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000051497 Kcnj16 ENSMUST00000180023 ENSMUSP00000136382 TRANSLATION protein_coding - CCDS25593.1 3 419.0 0.0 2.5 12.5 431.0 1.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000051497 Kcnj16 ENSMUST00000106636 ENSMUSP00000102247 TRANSLATION protein_coding - CCDS25593.1 1 419.0 0.0 2.5 12.5 431.0 1.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020437 Myo1g ENSMUST00000003459 ENSMUSP00000003459 TRANSLATION protein_coding - CCDS24421.1 1 1024.0 15.0 14.415 0.0 898.3 0.0 -4,-5 1.0 25 18.0 PRINCIPAL:1 ENSMUSG00000020437 Myo1g ENSMUST00000146536 ENSMUSP00000122438 TRANSLATION nonsense_mediated_decay - - 3 73.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020437 Myo1g ENSMUST00000134489 ENSMUSP00000122356 TRANSLATION protein_coding stop - 3 99.0 6.0 1.5 0.0 51.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020437 Myo1g ENSMUST00000131823 - NO_TRANSLATION retained_intron ENSMUSG00000020437 Myo1g ENSMUST00000134639 - NO_TRANSLATION retained_intron ENSMUSG00000020437 Myo1g ENSMUST00000144725 ENSMUSP00000120975 TRANSLATION nonsense_mediated_decay - - 5 65.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020437 Myo1g ENSMUST00000156878 - NO_TRANSLATION retained_intron ENSMUSG00000058755 Osm ENSMUST00000075221 ENSMUSP00000074708 TRANSLATION protein_coding - CCDS24382.1 1 263.0 0.0 0.798 0.0 240.1 0.0 4,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058755 Osm ENSMUST00000131764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000567 Sox9 ENSMUST00000000579 ENSMUSP00000000579 TRANSLATION protein_coding - CCDS25595.1 1 507.0 0.0 1.3 1.5 179.6 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000045545 Krt14 ENSMUST00000007272 ENSMUSP00000007272 TRANSLATION protein_coding - CCDS25413.1 1 484.0 0.0 4.25 1.1 399.4 0.0 -4,-1 1.0 18 13.0 PRINCIPAL:1 ENSMUSG00000045545 Krt14 ENSMUST00000137265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034543 Morc2a ENSMUST00000131517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034543 Morc2a ENSMUST00000126035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034543 Morc2a ENSMUST00000140242 ENSMUSP00000120211 TRANSLATION protein_coding stop - 3 102.0 11.0 3.25 0.0 60.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034543 Morc2a ENSMUST00000128666 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034543 Morc2a ENSMUST00000096441 ENSMUSP00000094176 TRANSLATION protein_coding - CCDS48741.1 5 1030.0 20.0 13.725 6.9 150.0 0.0 -4,-6 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000034543 Morc2a ENSMUST00000093389 ENSMUSP00000091087 TRANSLATION protein_coding - CCDS48741.1 1 1030.0 20.0 13.725 6.9 150.0 0.0 -4,-6 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000020493 Prr11 ENSMUST00000051395 ENSMUSP00000060803 TRANSLATION protein_coding - CCDS25208.1 1 368.0 0.0 1.6 6.5 0.0 0.0 -4,-7 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000017774 Myo1c ENSMUST00000146419 - NO_TRANSLATION retained_intron ENSMUSG00000017774 Myo1c ENSMUST00000123064 - NO_TRANSLATION retained_intron ENSMUSG00000017774 Myo1c ENSMUST00000151174 - NO_TRANSLATION retained_intron ENSMUSG00000017774 Myo1c ENSMUST00000155027 - NO_TRANSLATION retained_intron ENSMUSG00000017774 Myo1c ENSMUST00000136935 ENSMUSP00000121267 TRANSLATION protein_coding stop - 2 80.0 0.0 1.264 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000017774 Myo1c ENSMUST00000108431 ENSMUSP00000104069 TRANSLATION protein_coding - CCDS36228.1 1 1044.0 15.0 25.73 27.1 966.8 0.0 -4,-2 1.0 47 17.564 PRINCIPAL:3 ENSMUSG00000017774 Myo1c ENSMUST00000102505 ENSMUSP00000099563 TRANSLATION protein_coding - - 5 1063.0 15.0 25.664 11.8 966.8 0.0 -4,-6 0.5227 46 15.344 MINOR ENSMUSG00000017774 Myo1c ENSMUST00000102504 ENSMUSP00000099562 TRANSLATION protein_coding - CCDS25054.1 1 1028.0 15.0 25.4 30.3 966.8 0.0 -4,-5 1.0 45 17.34 ALTERNATIVE:1 ENSMUSG00000017774 Myo1c ENSMUST00000148659 - NO_TRANSLATION retained_intron ENSMUSG00000017774 Myo1c ENSMUST00000069057 ENSMUSP00000070388 TRANSLATION protein_coding - CCDS25054.1 1 1028.0 15.0 25.4 30.3 966.8 0.0 -4,-5 1.0 45 17.34 ALTERNATIVE:1 ENSMUSG00000042189 Tekt3 ENSMUST00000035732 ENSMUSP00000042063 TRANSLATION protein_coding - CCDS24836.1 1 490.0 0.0 6.3 19.3 486.8 0.0 -2,-4 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000043439 Epop ENSMUST00000052281 ENSMUSP00000051211 TRANSLATION protein_coding - CCDS25322.1 - 369.0 0.0 0.0 0.4 71.4 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000018405 Mrm1 ENSMUST00000018549 ENSMUSP00000018549 TRANSLATION protein_coding - CCDS36260.1 1 320.0 18.0 1.8 0.4 153.4 0.0 -4,0 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000018405 Mrm1 ENSMUST00000144104 - NO_TRANSLATION retained_intron ENSMUSG00000018405 Mrm1 ENSMUST00000139076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044177 Wfikkn2 ENSMUST00000061469 ENSMUSP00000053238 TRANSLATION protein_coding - CCDS25251.1 1 571.0 0.0 0.0 6.1 250.3 0.0 4,-1 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000044177 Wfikkn2 ENSMUST00000131352 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039238 Zfp750 ENSMUST00000092298 ENSMUSP00000089951 TRANSLATION protein_coding - CCDS25779.1 1 703.0 3.0 0.0 0.4 122.4 0.0 -4,-6 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000018500 Adora2b ENSMUST00000018644 ENSMUSP00000018644 TRANSLATION protein_coding - CCDS24822.1 1 332.0 0.0 1.8 8.5 182.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048732 Klhl11 ENSMUST00000056665 ENSMUSP00000054963 TRANSLATION protein_coding - CCDS25424.1 1 709.0 0.0 1.5 0.1 190.3 0.0 0,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000033880 Lgals3bp ENSMUST00000106290 ENSMUSP00000101897 TRANSLATION protein_coding stop - 3 204.0 0.0 2.33 0.0 106.5 0.0 4,-1 0.0012 3 -2.0 MINOR ENSMUSG00000033880 Lgals3bp ENSMUST00000144529 ENSMUSP00000120846 TRANSLATION protein_coding start - 5 139.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000033880 Lgals3bp ENSMUST00000043722 ENSMUSP00000035579 TRANSLATION protein_coding - CCDS25701.1 1 577.0 0.0 2.662 0.0 158.6 0.0 4,-1 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000033880 Lgals3bp ENSMUST00000141459 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033880 Lgals3bp ENSMUST00000127054 ENSMUSP00000121024 TRANSLATION protein_coding stop - 5 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0266 - -2.0 MINOR ENSMUSG00000020864 Ankrd40 ENSMUST00000107818 ENSMUSP00000103448 TRANSLATION protein_coding - CCDS25253.2 5 363.0 0.0 3.57 11.4 40.7 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020864 Ankrd40 ENSMUST00000051221 ENSMUSP00000061637 TRANSLATION protein_coding - - 1 322.0 0.0 2.82 0.0 40.7 0.0 -4,-5 0.0073 4 10.5 MINOR ENSMUSG00000020864 Ankrd40 ENSMUST00000149867 ENSMUSP00000120419 TRANSLATION protein_coding stop - 2 68.0 0.0 0.3 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020864 Ankrd40 ENSMUST00000021227 ENSMUSP00000021227 TRANSLATION protein_coding - CCDS36283.1 1 324.0 0.0 3.018 0.0 40.7 0.0 -4,-5 0.0541 4 10.896 MINOR ENSMUSG00000020864 Ankrd40 ENSMUST00000124087 - NO_TRANSLATION retained_intron ENSMUSG00000039640 Mrpl12 ENSMUST00000137619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039640 Mrpl12 ENSMUST00000043627 ENSMUSP00000044417 TRANSLATION protein_coding - CCDS25737.1 1 201.0 0.0 3.175 0.0 44.3 0.0 -4,0 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000034031 Ccdc182 ENSMUST00000037268 ENSMUSP00000036503 TRANSLATION protein_coding - CCDS48881.1 - 152.0 0.0 1.0 8.8 266.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069607 Cd300ld3 ENSMUST00000092459 ENSMUSP00000090116 TRANSLATION protein_coding - CCDS25617.1 1 245.0 0.0 1.0 0.0 52.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000064090 Vrk2 ENSMUST00000109504 ENSMUSP00000105130 TRANSLATION protein_coding - CCDS24486.1 1 503.0 0.0 8.75 6.4 61.2 1.0 -4,-6 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000064090 Vrk2 ENSMUST00000125545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064090 Vrk2 ENSMUST00000133487 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064090 Vrk2 ENSMUST00000156264 ENSMUSP00000119928 TRANSLATION protein_coding stop - 3 111.0 0.0 3.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000064090 Vrk2 ENSMUST00000124294 - NO_TRANSLATION retained_intron ENSMUSG00000064090 Vrk2 ENSMUST00000078362 ENSMUSP00000077471 TRANSLATION protein_coding - CCDS24486.1 1 503.0 0.0 8.75 6.4 61.2 1.0 -4,-6 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000064090 Vrk2 ENSMUST00000155728 - NO_TRANSLATION retained_intron ENSMUSG00000059534 Uqcr10 ENSMUST00000130236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059534 Uqcr10 ENSMUST00000151559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059534 Uqcr10 ENSMUST00000058407 ENSMUSP00000054856 TRANSLATION protein_coding - CCDS36098.1 1 64.0 9.0 1.5 12.5 90.9 0.0 -4,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000054519 Zfp867 ENSMUST00000057799 ENSMUSP00000050746 TRANSLATION protein_coding - CCDS24769.1 1 473.0 43.0 1.375 0.0 288.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000075410 Prcd ENSMUST00000116318 ENSMUSP00000112020 TRANSLATION protein_coding - CCDS48987.1 1 53.0 0.0 0.0 6.9 126.0 0.0 1,1 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000075410 Prcd ENSMUST00000106381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075410 Prcd ENSMUST00000156088 - NO_TRANSLATION retained_intron ENSMUSG00000075410 Prcd ENSMUST00000148484 ENSMUSP00000119671 TRANSLATION protein_coding - CCDS48987.1 1 53.0 0.0 0.0 6.9 126.0 0.0 1,1 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000020376 Rnf130 ENSMUST00000238748 ENSMUSP00000158797 TRANSLATION protein_coding - - - 419.0 8.0 5.5 3.6 76.7 2.0 3,-3 0.766 3 15.106 ALTERNATIVE:2 ENSMUSG00000020376 Rnf130 ENSMUST00000102776 ENSMUSP00000099837 TRANSLATION protein_coding - CCDS24626.1 1 419.0 8.0 5.5 5.7 76.7 2.0 3,-3 1.0 3 16.0 PRINCIPAL:4 ENSMUSG00000020376 Rnf130 ENSMUST00000143607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020376 Rnf130 ENSMUST00000054684 ENSMUSP00000056345 TRANSLATION protein_coding - CCDS78937.1 1 384.0 8.0 5.5 3.6 76.7 2.0 3,-3 0.6897 3 15.106 ALTERNATIVE:2 ENSMUSG00000020620 Abca8b ENSMUST00000020948 ENSMUSP00000020948 TRANSLATION protein_coding - CCDS25587.1 1 1620.0 25.0 10.632 1.2 319.5 12.0 -4,-7 1.0 14 18.298 PRINCIPAL:1 ENSMUSG00000020620 Abca8b ENSMUST00000106669 ENSMUSP00000102280 TRANSLATION protein_coding - - 1 1558.0 25.0 10.982 0.0 285.0 10.0 -4,-7 0.1748 14 15.93 MINOR ENSMUSG00000020431 Adcy1 ENSMUST00000020706 ENSMUSP00000020706 TRANSLATION protein_coding - CCDS24426.1 2 1118.0 7.0 8.925 0.0 525.6 0.0 -4,-6 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000020431 Adcy1 ENSMUST00000135398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020490 Btnl10 ENSMUST00000142499 ENSMUSP00000124234 TRANSLATION nonsense_mediated_decay - - 5 492.0 0.0 2.565 0.1 188.5 1.0 -1,-3 0.8237 - -2.0 MINOR ENSMUSG00000020490 Btnl10 ENSMUST00000020792 ENSMUSP00000020792 TRANSLATION protein_coding - CCDS24753.1 5 275.0 0.0 1.4 0.0 89.9 0.0 -1,-3 0.0349 2 3.36 MINOR ENSMUSG00000020490 Btnl10 ENSMUST00000069941 ENSMUSP00000063279 TRANSLATION protein_coding - - 1 492.0 0.0 2.565 0.1 188.5 1.0 -1,-3 0.8237 9 12.0 PRINCIPAL:1 ENSMUSG00000020741 Cluh ENSMUST00000130398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020741 Cluh ENSMUST00000127679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020741 Cluh ENSMUST00000117818 ENSMUSP00000113371 TRANSLATION protein_coding - - 1 1302.0 0.0 1.875 0.0 490.3 0.0 -4,-5 0.1084 36 8.394 MINOR ENSMUSG00000020741 Cluh ENSMUST00000155558 - NO_TRANSLATION retained_intron ENSMUSG00000020741 Cluh ENSMUST00000128155 - NO_TRANSLATION retained_intron ENSMUSG00000020741 Cluh ENSMUST00000092915 ENSMUSP00000090593 TRANSLATION protein_coding - CCDS36223.1 1 1353.0 0.0 1.875 6.5 550.4 0.0 -4,-5 1.0 38 14.0 PRINCIPAL:1 ENSMUSG00000093839 Or4d2b ENSMUST00000213928 ENSMUSP00000150179 TRANSLATION protein_coding - CCDS25221.1 5 311.0 0.0 1.0 12.5 138.1 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093839 Or4d2b ENSMUST00000213672 ENSMUSP00000149954 TRANSLATION protein_coding - CCDS25221.1 5 311.0 0.0 1.0 12.5 138.1 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093839 Or4d2b ENSMUST00000049743 ENSMUSP00000055334 TRANSLATION protein_coding - CCDS25221.1 - 311.0 0.0 1.0 12.5 138.1 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003119 Cdk12 ENSMUST00000145113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003119 Cdk12 ENSMUST00000107538 ENSMUSP00000103162 TRANSLATION protein_coding - CCDS48901.1 1 1484.0 17.0 7.85 5.4 248.1 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:4 ENSMUSG00000003119 Cdk12 ENSMUST00000107539 ENSMUSP00000103163 TRANSLATION protein_coding - CCDS48902.1 5 1475.0 17.0 7.85 5.4 248.1 0.0 -4,-5 0.9448 12 14.0 ALTERNATIVE:1 ENSMUSG00000003119 Cdk12 ENSMUST00000147441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003119 Cdk12 ENSMUST00000003203 ENSMUSP00000003203 TRANSLATION protein_coding - CCDS25342.1 1 1258.0 17.0 7.85 1.1 248.1 0.0 -4,-5 0.4404 10 12.046 MINOR ENSMUSG00000003119 Cdk12 ENSMUST00000125152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044542 Prop1 ENSMUST00000162420 ENSMUSP00000125413 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000044542 Prop1 ENSMUST00000051159 ENSMUSP00000057231 TRANSLATION protein_coding - CCDS24643.1 1 223.0 0.0 1.2 9.8 79.4 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044542 Prop1 ENSMUST00000159179 - NO_TRANSLATION retained_intron ENSMUSG00000036964 Trim17 ENSMUST00000047697 ENSMUSP00000037248 TRANSLATION protein_coding - - 2 285.0 16.0 1.75 0.0 92.7 0.0 -4,-5 0.0 - 12.252 MINOR ENSMUSG00000036964 Trim17 ENSMUST00000075141 ENSMUSP00000074639 TRANSLATION protein_coding - CCDS24756.1 1 477.0 16.0 3.02 8.1 146.2 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000048497 Mmgt2 ENSMUST00000142112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048497 Mmgt2 ENSMUST00000155759 ENSMUSP00000128697 TRANSLATION protein_coding - CCDS36179.1 1 123.0 0.0 2.08 0.1 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048497 Mmgt2 ENSMUST00000129162 ENSMUSP00000128669 TRANSLATION protein_coding - CCDS36179.1 5 123.0 0.0 2.08 0.1 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000048497 Mmgt2 ENSMUST00000148696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048497 Mmgt2 ENSMUST00000148707 - NO_TRANSLATION retained_intron ENSMUSG00000048497 Mmgt2 ENSMUST00000127589 ENSMUSP00000130397 TRANSLATION protein_coding stop - 2 34.0 0.0 1.08 0.0 0.0 0.0 3,-2 0.0804 - -2.0 MINOR ENSMUSG00000048497 Mmgt2 ENSMUST00000062860 ENSMUSP00000129511 TRANSLATION protein_coding stop - 2 10.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0176 - -2.0 MINOR ENSMUSG00000044707 Ccnjl ENSMUST00000152153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044707 Ccnjl ENSMUST00000050574 ENSMUSP00000058111 TRANSLATION protein_coding - CCDS24559.1 1 387.0 0.0 3.6 11.0 120.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020686 Gas2l2 ENSMUST00000147301 ENSMUSP00000119454 TRANSLATION nonsense_mediated_decay - - 5 213.0 0.0 1.8 0.0 62.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000020686 Gas2l2 ENSMUST00000052521 ENSMUSP00000051907 TRANSLATION protein_coding - CCDS25164.1 1 860.0 4.0 3.75 0.1 171.8 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020599 Rgs9 ENSMUST00000156785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020599 Rgs9 ENSMUST00000106704 ENSMUSP00000102315 TRANSLATION protein_coding - - 1 232.0 0.0 6.25 0.0 49.4 0.0 -4,-7 0.0 7 0.75 MINOR ENSMUSG00000020599 Rgs9 ENSMUST00000106706 ENSMUSP00000102317 TRANSLATION protein_coding - CCDS48969.1 1 484.0 0.0 12.03 5.4 201.7 0.0 -4,-7 0.8708 10 9.572 ALTERNATIVE:1 ENSMUSG00000020599 Rgs9 ENSMUST00000020920 ENSMUSP00000020920 TRANSLATION protein_coding - CCDS25576.1 1 675.0 0.0 12.03 6.6 201.7 0.0 -4,-7 1.0 14 10.0 PRINCIPAL:3 ENSMUSG00000020599 Rgs9 ENSMUST00000103062 ENSMUSP00000099351 TRANSLATION protein_coding - - 5 449.0 0.0 5.45 0.1 143.2 0.0 -4,-7 0.0013 6 1.0 MINOR ENSMUSG00000041961 Znrf3 ENSMUST00000143746 ENSMUSP00000122475 TRANSLATION protein_coding - - 1 239.0 0.0 3.55 0.0 0.0 0.0 -1,-4 0.0 - 2.958 MINOR ENSMUSG00000041961 Znrf3 ENSMUST00000109867 ENSMUSP00000105493 TRANSLATION protein_coding - CCDS36102.1 5 913.0 8.0 5.07 0.0 45.6 1.0 -1,-4 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000041961 Znrf3 ENSMUST00000172492 ENSMUSP00000134698 TRANSLATION protein_coding - CCDS70134.1 1 809.0 8.0 4.27 0.0 45.6 1.0 -4,-5 0.1468 1 16.398 MINOR ENSMUSG00000052949 Rnf157 ENSMUST00000142758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052949 Rnf157 ENSMUST00000150775 ENSMUSP00000123289 TRANSLATION protein_coding start - 3 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052949 Rnf157 ENSMUST00000148763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052949 Rnf157 ENSMUST00000100202 ENSMUSP00000097776 TRANSLATION protein_coding - CCDS48984.1 1 681.0 8.0 0.64 5.3 51.9 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000052949 Rnf157 ENSMUST00000129202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052949 Rnf157 ENSMUST00000149682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052949 Rnf157 ENSMUST00000106398 ENSMUSP00000102006 TRANSLATION protein_coding - - 5 659.0 8.0 0.64 1.0 51.9 0.0 -4,-5 0.2689 4 18.0 MINOR ENSMUSG00000052949 Rnf157 ENSMUST00000149147 ENSMUSP00000122483 TRANSLATION protein_coding start - 1 506.0 8.0 0.64 0.0 51.9 0.0 -4,-7 0.0549 3 -2.0 MINOR ENSMUSG00000052949 Rnf157 ENSMUST00000137264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052949 Rnf157 ENSMUST00000137083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052949 Rnf157 ENSMUST00000141229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034471 Caskin2 ENSMUST00000041684 ENSMUSP00000041328 TRANSLATION protein_coding - CCDS25647.1 1 1201.0 0.0 11.5 4.7 471.4 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000034471 Caskin2 ENSMUST00000125658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034471 Caskin2 ENSMUST00000132780 ENSMUSP00000119158 TRANSLATION protein_coding stop - 3 245.0 0.0 5.7 0.0 135.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034471 Caskin2 ENSMUST00000156812 ENSMUSP00000114310 TRANSLATION protein_coding stop - 3 110.0 0.0 2.65 0.0 56.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018372 Cep95 ENSMUST00000133581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018372 Cep95 ENSMUST00000124898 ENSMUSP00000122454 TRANSLATION protein_coding start - 3 121.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 1 -2.0 MINOR ENSMUSG00000018372 Cep95 ENSMUST00000018516 ENSMUSP00000018516 TRANSLATION protein_coding - CCDS25563.1 1 827.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.937 4 0.0 PRINCIPAL:2 ENSMUSG00000018372 Cep95 ENSMUST00000131244 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018372 Cep95 ENSMUST00000149279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018372 Cep95 ENSMUST00000103068 ENSMUSP00000099357 TRANSLATION protein_coding - CCDS48963.1 1 784.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.3383 4 0.0 ALTERNATIVE:2 ENSMUSG00000018372 Cep95 ENSMUST00000130019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069631 Strada ENSMUST00000122989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069631 Strada ENSMUST00000103072 ENSMUSP00000099361 TRANSLATION protein_coding - CCDS25550.1 1 394.0 21.0 6.5 9.6 124.2 0.0 -4,-5 0.7179 5 19.764 MINOR ENSMUSG00000069631 Strada ENSMUST00000007444 ENSMUSP00000007444 TRANSLATION protein_coding - CCDS56816.1 1 431.0 21.0 6.5 20.5 124.2 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000069631 Strada ENSMUST00000106867 ENSMUSP00000102480 TRANSLATION protein_coding - - 1 65.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - 0.0 MINOR ENSMUSG00000069631 Strada ENSMUST00000152008 ENSMUSP00000115555 TRANSLATION protein_coding stop - 5 158.0 17.0 3.8 0.0 53.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020883 Fbxl20 ENSMUST00000150378 ENSMUSP00000119003 TRANSLATION protein_coding stop - 5 210.0 0.0 6.0 0.0 78.9 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000020883 Fbxl20 ENSMUST00000147971 ENSMUSP00000123507 TRANSLATION protein_coding start - 2 142.0 0.0 2.5 0.0 11.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020883 Fbxl20 ENSMUST00000146399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020883 Fbxl20 ENSMUST00000149327 ENSMUSP00000120709 TRANSLATION protein_coding stop - 2 110.0 0.0 3.5 0.0 50.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000020883 Fbxl20 ENSMUST00000103143 ENSMUSP00000099432 TRANSLATION protein_coding - CCDS25339.1 1 436.0 0.0 11.58 28.1 108.1 0.0 -4,-7 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000020883 Fbxl20 ENSMUST00000148473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020883 Fbxl20 ENSMUST00000135969 - NO_TRANSLATION retained_intron ENSMUSG00000056579 Tug1 ENSMUST00000226545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056579 Tug1 ENSMUST00000227137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056579 Tug1 ENSMUST00000182330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056579 Tug1 ENSMUST00000132077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056579 Tug1 ENSMUST00000193809 ENSMUSP00000159371 TRANSLATION protein_coding start - - 142.0 0.0 0.0 0.0 0.0 0.0 -1,2 0.5944 - -2.0 PRINCIPAL:1 ENSMUSG00000056579 Tug1 ENSMUST00000144852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056579 Tug1 ENSMUST00000226724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056579 Tug1 ENSMUST00000153313 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069892 9930111J21Rik2 ENSMUST00000093152 ENSMUSP00000090839 TRANSLATION protein_coding - CCDS36144.1 1 467.0 15.0 1.44 0.0 413.6 0.0 -4,-5 0.0189 - 3.858 MINOR ENSMUSG00000069892 9930111J21Rik2 ENSMUST00000101295 ENSMUSP00000098853 TRANSLATION protein_coding - - 1 844.0 28.0 2.24 0.4 910.2 0.0 -4,-5 0.9278 1 18.0 PRINCIPAL:1 ENSMUSG00000069892 9930111J21Rik2 ENSMUST00000132768 ENSMUSP00000120450 TRANSLATION protein_coding stop - 1 125.0 8.0 0.8 0.0 99.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025583 Rptor ENSMUST00000136662 ENSMUSP00000125293 TRANSLATION nonsense_mediated_decay start - 2 264.0 0.0 2.88 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000025583 Rptor ENSMUST00000125583 - NO_TRANSLATION retained_intron ENSMUSG00000025583 Rptor ENSMUST00000127899 - NO_TRANSLATION retained_intron ENSMUSG00000025583 Rptor ENSMUST00000026671 ENSMUSP00000026671 TRANSLATION protein_coding - CCDS25720.1 1 1335.0 0.0 22.384 9.1 35.1 0.0 -4,-6 1.0 30 15.0 PRINCIPAL:1 ENSMUSG00000025583 Rptor ENSMUST00000130049 - NO_TRANSLATION retained_intron ENSMUSG00000025583 Rptor ENSMUST00000124401 ENSMUSP00000125503 TRANSLATION protein_coding start/stop - 5 171.0 0.0 3.83 0.0 30.7 0.0 0,-4 0.0106 5 -2.0 MINOR ENSMUSG00000025583 Rptor ENSMUST00000148860 - NO_TRANSLATION retained_intron ENSMUSG00000025583 Rptor ENSMUST00000147772 - NO_TRANSLATION retained_intron ENSMUSG00000025583 Rptor ENSMUST00000131217 ENSMUSP00000125667 TRANSLATION nonsense_mediated_decay start - 5 102.0 0.0 1.866 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025583 Rptor ENSMUST00000247866 ENSMUSP00000159536 TRANSLATION protein_coding - - - 1353.0 0.0 22.384 0.0 35.1 0.0 -4,-5 0.2543 30 12.0 MINOR ENSMUSG00000025583 Rptor ENSMUST00000126802 - NO_TRANSLATION retained_intron ENSMUSG00000025583 Rptor ENSMUST00000139728 ENSMUSP00000124886 TRANSLATION nonsense_mediated_decay start - 3 89.0 0.0 2.165 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000025583 Rptor ENSMUST00000147781 ENSMUSP00000124366 TRANSLATION nonsense_mediated_decay - - 1 387.0 0.0 7.929 0.0 0.0 0.0 -4,-6 0.0004 8 -2.0 MINOR ENSMUSG00000000275 Trim25 ENSMUST00000107896 ENSMUSP00000103528 TRANSLATION protein_coding - CCDS36278.1 1 634.0 16.0 5.6 0.0 139.4 0.0 -4,-5 1.0 18 14.0 PRINCIPAL:2 ENSMUSG00000000275 Trim25 ENSMUST00000000284 ENSMUSP00000000284 TRANSLATION protein_coding - - 1 626.0 16.0 5.6 0.0 139.4 0.0 -4,-5 0.3117 18 14.0 ALTERNATIVE:2 ENSMUSG00000000275 Trim25 ENSMUST00000100627 ENSMUSP00000098192 TRANSLATION protein_coding - - 5 387.0 16.0 3.6 0.0 41.1 0.0 -4,-5 0.0 11 8.856 MINOR ENSMUSG00000017588 Krt27 ENSMUST00000017732 ENSMUSP00000017732 TRANSLATION protein_coding - CCDS25379.1 1 448.0 0.0 3.75 1.5 337.6 0.0 -2,2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000034239 Lrrc37 ENSMUST00000059279 ENSMUSP00000058511 TRANSLATION protein_coding - - 1 3643.0 0.0 5.5 0.0 1396.7 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000034239 Lrrc37 ENSMUST00000167262 ENSMUSP00000129662 TRANSLATION protein_coding - CCDS48952.1 1 1467.0 0.0 5.5 0.0 479.0 0.0 -4,-5 0.3692 11 6.0 MINOR ENSMUSG00000018809 Smyd4 ENSMUST00000145888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018809 Smyd4 ENSMUST00000044530 ENSMUSP00000047505 TRANSLATION protein_coding - CCDS48848.1 1 799.0 26.0 2.76 7.8 101.4 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000018809 Smyd4 ENSMUST00000135774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018809 Smyd4 ENSMUST00000157055 - NO_TRANSLATION retained_intron ENSMUSG00000020386 Sar1b ENSMUST00000136363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020386 Sar1b ENSMUST00000020653 ENSMUSP00000020653 TRANSLATION protein_coding - CCDS24661.1 1 198.0 16.0 5.35 36.9 210.3 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000025127 Gcgr ENSMUST00000026119 ENSMUSP00000026119 TRANSLATION protein_coding - CCDS25739.1 1 485.0 0.0 10.2 3.6 323.7 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000025127 Gcgr ENSMUST00000147877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025127 Gcgr ENSMUST00000143063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025127 Gcgr ENSMUST00000128827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020402 Vdac1 ENSMUST00000157052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020402 Vdac1 ENSMUST00000020673 ENSMUSP00000020673 TRANSLATION protein_coding - - 5 296.0 0.0 6.25 0.0 279.8 0.0 2,-2 0.1241 14 12.0 MINOR ENSMUSG00000020402 Vdac1 ENSMUST00000102758 ENSMUSP00000099819 TRANSLATION protein_coding - CCDS24671.1 1 283.0 0.0 6.25 36.9 279.8 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000020402 Vdac1 ENSMUST00000153339 - NO_TRANSLATION retained_intron ENSMUSG00000020402 Vdac1 ENSMUST00000125694 ENSMUSP00000116919 TRANSLATION nonsense_mediated_decay - - 5 254.0 0.0 4.75 0.0 231.2 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000037331 Larp1 ENSMUST00000071487 ENSMUSP00000071421 TRANSLATION protein_coding - - 5 1072.0 0.0 5.8 0.4 73.0 0.0 -4,-5 0.6718 27 8.0 ALTERNATIVE:2 ENSMUSG00000037331 Larp1 ENSMUST00000178636 ENSMUSP00000136673 TRANSLATION protein_coding - CCDS56771.1 5 1072.0 0.0 5.8 0.4 73.0 0.0 -4,-5 1.0 27 8.0 PRINCIPAL:2 ENSMUSG00000037331 Larp1 ENSMUST00000140500 - NO_TRANSLATION retained_intron ENSMUSG00000010142 Tnfrsf13b ENSMUST00000130708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010142 Tnfrsf13b ENSMUST00000139422 ENSMUSP00000116175 TRANSLATION protein_coding stop - 5 140.0 0.0 0.93 0.0 74.8 0.0 -4,-6 0.0421 2 -2.0 MINOR ENSMUSG00000010142 Tnfrsf13b ENSMUST00000137832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010142 Tnfrsf13b ENSMUST00000101103 ENSMUSP00000098662 TRANSLATION protein_coding - CCDS24806.1 1 249.0 0.0 0.93 0.1 74.8 1.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000010142 Tnfrsf13b ENSMUST00000146033 ENSMUSP00000116943 TRANSLATION protein_coding stop - 5 73.0 0.0 0.33 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000010142 Tnfrsf13b ENSMUST00000123378 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010142 Tnfrsf13b ENSMUST00000010286 ENSMUSP00000010286 TRANSLATION protein_coding - CCDS24806.1 1 249.0 0.0 0.93 0.1 74.8 1.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000017802 Retreg3 ENSMUST00000107295 ENSMUSP00000102916 TRANSLATION protein_coding - CCDS25450.1 1 285.0 0.0 1.1 0.8 0.0 2.0 -1,-5 0.1586 1 4.128 MINOR ENSMUSG00000017802 Retreg3 ENSMUST00000017946 ENSMUSP00000017946 TRANSLATION protein_coding - CCDS25449.1 1 466.0 0.0 1.6 10.3 0.0 4.0 -4,-6 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000017802 Retreg3 ENSMUST00000147201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017802 Retreg3 ENSMUST00000142733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017802 Retreg3 ENSMUST00000154513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020549 Elac2 ENSMUST00000101049 ENSMUSP00000098610 TRANSLATION protein_coding - - 5 824.0 8.0 4.037 1.3 78.6 0.0 -4,-1 0.8361 22 15.0 PRINCIPAL:4 ENSMUSG00000020549 Elac2 ENSMUST00000142574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020549 Elac2 ENSMUST00000128693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020549 Elac2 ENSMUST00000108697 ENSMUSP00000104337 TRANSLATION protein_coding - - 5 823.0 8.0 3.662 1.3 78.6 0.0 -4,-1 0.7416 21 14.25 ALTERNATIVE:2 ENSMUSG00000020549 Elac2 ENSMUST00000071891 ENSMUSP00000071788 TRANSLATION protein_coding - CCDS24841.1 1 831.0 8.0 4.037 0.0 78.6 0.0 -4,-1 0.6195 22 14.0 ALTERNATIVE:2 ENSMUSG00000020549 Elac2 ENSMUST00000132308 ENSMUSP00000117422 TRANSLATION protein_coding stop - 3 207.0 0.0 0.232 0.0 0.0 0.0 -4,0 0.0008 6 -2.0 MINOR ENSMUSG00000020549 Elac2 ENSMUST00000140369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018740 Slc25a35 ENSMUST00000018884 ENSMUSP00000018884 TRANSLATION protein_coding - - 1 296.0 8.0 4.75 27.3 162.4 0.0 -3,-6 0.8323 12 18.0 ALTERNATIVE:1 ENSMUSG00000018740 Slc25a35 ENSMUST00000102606 ENSMUSP00000099666 TRANSLATION protein_coding - CCDS24874.1 1 300.0 8.0 4.75 27.3 166.7 0.0 -3,-6 1.0 13 17.666 PRINCIPAL:3 ENSMUSG00000018740 Slc25a35 ENSMUST00000136520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040413 Timd2 ENSMUST00000109225 ENSMUSP00000104848 TRANSLATION protein_coding - CCDS24582.1 1 305.0 0.0 2.0 0.0 39.8 1.0 2,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000040413 Timd2 ENSMUST00000169584 ENSMUSP00000131540 TRANSLATION protein_coding - CCDS24582.1 1 305.0 0.0 2.0 0.0 39.8 1.0 2,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000040413 Timd2 ENSMUST00000055102 ENSMUSP00000060891 TRANSLATION protein_coding - CCDS24582.1 1 305.0 0.0 2.0 0.0 39.8 1.0 2,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000040413 Timd2 ENSMUST00000125008 ENSMUSP00000123042 TRANSLATION protein_coding stop - 2 92.0 0.0 1.0 0.0 0.0 0.0 2,-3 0.0053 - -2.0 MINOR ENSMUSG00000053930 Shisa6 ENSMUST00000066679 ENSMUSP00000071025 TRANSLATION protein_coding - CCDS24848.1 1 525.0 0.0 0.0 0.0 138.3 0.0 4,-1 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000053930 Shisa6 ENSMUST00000123454 ENSMUSP00000120862 TRANSLATION protein_coding start - 1 501.0 0.0 0.0 0.0 138.2 0.0 -2,2 0.0825 8 -2.0 MINOR ENSMUSG00000053930 Shisa6 ENSMUST00000134562 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020775 Mrpl38 ENSMUST00000133159 - NO_TRANSLATION retained_intron ENSMUSG00000020775 Mrpl38 ENSMUST00000138457 - NO_TRANSLATION retained_intron ENSMUSG00000020775 Mrpl38 ENSMUST00000124722 - NO_TRANSLATION retained_intron ENSMUSG00000020775 Mrpl38 ENSMUST00000145655 - NO_TRANSLATION retained_intron ENSMUSG00000020775 Mrpl38 ENSMUST00000106439 ENSMUSP00000102047 TRANSLATION protein_coding - CCDS25658.2 1 380.0 9.0 7.25 16.4 0.0 0.0 -2,1 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000020775 Mrpl38 ENSMUST00000142550 - NO_TRANSLATION retained_intron ENSMUSG00000020897 Aurkb ENSMUST00000156373 - NO_TRANSLATION retained_intron ENSMUSG00000020897 Aurkb ENSMUST00000139457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020897 Aurkb ENSMUST00000021277 ENSMUSP00000021277 TRANSLATION protein_coding - CCDS24877.1 1 345.0 18.0 5.0 5.3 238.7 0.0 -4,-6 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000020897 Aurkb ENSMUST00000108666 ENSMUSP00000104306 TRANSLATION protein_coding - CCDS24877.1 5 345.0 18.0 5.0 5.3 238.7 0.0 -4,-6 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000020897 Aurkb ENSMUST00000126576 - NO_TRANSLATION retained_intron ENSMUSG00000020897 Aurkb ENSMUST00000149018 - NO_TRANSLATION retained_intron ENSMUSG00000020897 Aurkb ENSMUST00000139594 - NO_TRANSLATION retained_intron ENSMUSG00000020897 Aurkb ENSMUST00000140531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010358 Ifi35 ENSMUST00000125958 - NO_TRANSLATION retained_intron ENSMUSG00000010358 Ifi35 ENSMUST00000010502 ENSMUSP00000010502 TRANSLATION protein_coding - CCDS25471.1 1 286.0 0.0 0.0 0.0 253.1 0.0 -4,-6 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000010358 Ifi35 ENSMUST00000131024 ENSMUSP00000117189 TRANSLATION nonsense_mediated_decay - - 2 54.0 0.0 0.0 0.0 23.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000040746 Rnf167 ENSMUST00000143313 - NO_TRANSLATION retained_intron ENSMUSG00000040746 Rnf167 ENSMUST00000152160 ENSMUSP00000115057 TRANSLATION nonsense_mediated_decay - - 3 53.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0033 - -2.0 MINOR ENSMUSG00000040746 Rnf167 ENSMUST00000037534 ENSMUSP00000036472 TRANSLATION protein_coding - CCDS24959.1 1 347.0 8.0 2.95 1.2 85.7 0.0 1,-2 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000040746 Rnf167 ENSMUST00000141695 ENSMUSP00000121511 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0033 - -2.0 MINOR ENSMUSG00000040746 Rnf167 ENSMUST00000141237 - NO_TRANSLATION retained_intron ENSMUSG00000040746 Rnf167 ENSMUST00000131071 - NO_TRANSLATION retained_intron ENSMUSG00000040746 Rnf167 ENSMUST00000152276 - NO_TRANSLATION retained_intron ENSMUSG00000040746 Rnf167 ENSMUST00000151034 - NO_TRANSLATION retained_intron ENSMUSG00000040746 Rnf167 ENSMUST00000141537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040746 Rnf167 ENSMUST00000152458 - NO_TRANSLATION retained_intron ENSMUSG00000070336 Fbxo47 ENSMUST00000093939 ENSMUSP00000091471 TRANSLATION protein_coding - CCDS36299.1 1 451.0 0.0 0.0 18.0 23.7 0.0 -4,-1 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000070336 Fbxo47 ENSMUST00000125403 - NO_TRANSLATION retained_intron ENSMUSG00000000686 Abhd15 ENSMUST00000145676 ENSMUSP00000117776 TRANSLATION protein_coding start - 3 58.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0115 - -2.0 MINOR ENSMUSG00000000686 Abhd15 ENSMUST00000147386 ENSMUSP00000116682 TRANSLATION protein_coding start - 1 108.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0157 1 -2.0 MINOR ENSMUSG00000000686 Abhd15 ENSMUST00000094004 ENSMUSP00000091541 TRANSLATION protein_coding - CCDS36234.1 1 459.0 0.0 1.1 1.3 0.0 0.0 3,-2 1.0 8 7.0 PRINCIPAL:1 ENSMUSG00000017210 Med24 ENSMUST00000144048 - NO_TRANSLATION retained_intron ENSMUSG00000017210 Med24 ENSMUST00000125064 - NO_TRANSLATION retained_intron ENSMUSG00000017210 Med24 ENSMUST00000144720 - NO_TRANSLATION retained_intron ENSMUSG00000017210 Med24 ENSMUST00000138750 ENSMUSP00000120002 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 1.0 0.0 72.9 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000017210 Med24 ENSMUST00000156378 - NO_TRANSLATION retained_intron ENSMUSG00000017210 Med24 ENSMUST00000124371 - NO_TRANSLATION retained_intron ENSMUSG00000017210 Med24 ENSMUST00000100500 ENSMUSP00000098069 TRANSLATION protein_coding - - 5 1006.0 0.0 14.79 7.6 1309.0 0.0 -4,-7 0.3866 17 10.378 MINOR ENSMUSG00000017210 Med24 ENSMUST00000137328 - NO_TRANSLATION retained_intron ENSMUSG00000017210 Med24 ENSMUST00000126565 ENSMUSP00000118820 TRANSLATION protein_coding stop - 5 90.0 0.0 2.58 0.0 174.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000017210 Med24 ENSMUST00000139849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017210 Med24 ENSMUST00000141566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017210 Med24 ENSMUST00000017354 ENSMUSP00000017354 TRANSLATION protein_coding - CCDS25361.2 1 987.0 0.0 15.29 28.7 1335.2 0.0 -4,-7 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000048445 Ccdc57 ENSMUST00000143895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048445 Ccdc57 ENSMUST00000150640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048445 Ccdc57 ENSMUST00000056781 ENSMUSP00000050996 TRANSLATION protein_coding - CCDS25760.1 1 1016.0 0.0 0.0 0.3 0.0 0.0 -4,-5 0.9913 1 0.0 PRINCIPAL:1 ENSMUSG00000078607 1810010H24Rik ENSMUST00000106767 ENSMUSP00000148142 TRANSLATION protein_coding - CCDS83916.1 2 112.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.8401 - 0.0 PRINCIPAL:2 ENSMUSG00000078607 1810010H24Rik ENSMUST00000140447 ENSMUSP00000147434 TRANSLATION protein_coding - - 5 305.0 0.0 0.0 0.4 0.0 0.0 0,-3 0.2128 - 0.0 ALTERNATIVE:2 ENSMUSG00000078607 1810010H24Rik ENSMUST00000239464 ENSMUSP00000159327 TRANSLATION protein_coding start - - 143.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0228 - -2.0 MINOR ENSMUSG00000044122 Proca1 ENSMUST00000239287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044122 Proca1 ENSMUST00000078099 ENSMUSP00000086022 TRANSLATION protein_coding - CCDS36238.1 1 220.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.8689 - 0.0 PRINCIPAL:2 ENSMUSG00000044122 Proca1 ENSMUST00000060539 ENSMUSP00000050319 TRANSLATION protein_coding - - 2 65.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0286 - 0.0 ALTERNATIVE:2 ENSMUSG00000044122 Proca1 ENSMUST00000108317 ENSMUSP00000103953 TRANSLATION protein_coding - - 5 307.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0594 - 0.0 ALTERNATIVE:2 ENSMUSG00000044122 Proca1 ENSMUST00000124772 - NO_TRANSLATION retained_intron ENSMUSG00000059474 Mbtd1 ENSMUST00000127539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059474 Mbtd1 ENSMUST00000150237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059474 Mbtd1 ENSMUST00000063645 ENSMUSP00000070248 TRANSLATION protein_coding - - 1 504.0 4.0 7.46 0.0 198.3 0.0 -4,-5 0.0008 7 6.214 MINOR ENSMUSG00000059474 Mbtd1 ENSMUST00000140880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059474 Mbtd1 ENSMUST00000063718 ENSMUSP00000065442 TRANSLATION protein_coding - CCDS83868.1 1 622.0 4.0 9.36 0.1 298.1 0.0 -4,-5 0.2449 8 16.0 MINOR ENSMUSG00000059474 Mbtd1 ENSMUST00000132739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059474 Mbtd1 ENSMUST00000155841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059474 Mbtd1 ENSMUST00000145354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059474 Mbtd1 ENSMUST00000155518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059474 Mbtd1 ENSMUST00000107853 ENSMUSP00000103485 TRANSLATION protein_coding - CCDS48883.1 3 631.0 4.0 9.36 15.0 298.1 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000059474 Mbtd1 ENSMUST00000138281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059474 Mbtd1 ENSMUST00000107850 ENSMUSP00000103482 TRANSLATION protein_coding stop - 5 201.0 4.0 2.55 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000059474 Mbtd1 ENSMUST00000107854 ENSMUSP00000103486 TRANSLATION protein_coding - CCDS48883.1 1 631.0 4.0 9.36 15.0 298.1 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000059474 Mbtd1 ENSMUST00000107852 ENSMUSP00000103484 TRANSLATION protein_coding - - 5 433.0 4.0 6.7 0.0 142.3 0.0 -4,-5 0.0 7 4.678 MINOR ENSMUSG00000018476 Kdm6b ENSMUST00000094077 ENSMUSP00000091620 TRANSLATION protein_coding - CCDS24895.1 5 1641.0 7.0 9.039 0.0 105.8 0.0 -2,0 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000018476 Kdm6b ENSMUST00000156562 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078262 Krtap4-9 ENSMUST00000105059 ENSMUSP00000100680 TRANSLATION protein_coding - CCDS48917.1 - 244.0 0.0 0.0 0.0 133.6 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000061666 Gdpd1 ENSMUST00000020804 ENSMUSP00000020804 TRANSLATION protein_coding - CCDS25206.1 1 314.0 7.0 8.25 22.2 86.4 0.0 -3,-6 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000082101 Slfn14 ENSMUST00000163961 ENSMUSP00000139132 TRANSLATION protein_coding - CCDS70269.1 1 899.0 9.0 0.4 0.4 58.9 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000047260 Emc6 ENSMUST00000054952 ENSMUSP00000060892 TRANSLATION protein_coding - CCDS24999.1 1 110.0 0.0 1.0 29.2 83.0 2.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000047260 Emc6 ENSMUST00000108480 ENSMUSP00000104120 TRANSLATION protein_coding - CCDS24999.1 2 110.0 0.0 1.0 29.2 83.0 2.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000039781 Cep131 ENSMUST00000150463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039781 Cep131 ENSMUST00000106227 ENSMUSP00000101834 TRANSLATION protein_coding - CCDS36386.2 1 1059.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9861 16 0.0 PRINCIPAL:2 ENSMUSG00000039781 Cep131 ENSMUST00000145641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039781 Cep131 ENSMUST00000144128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039781 Cep131 ENSMUST00000106229 ENSMUSP00000101836 TRANSLATION protein_coding - - 1 1060.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.6898 16 0.0 ALTERNATIVE:2 ENSMUSG00000039781 Cep131 ENSMUST00000156075 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037958 Nsrp1 ENSMUST00000102494 ENSMUSP00000099552 TRANSLATION protein_coding - CCDS25075.1 1 542.0 0.0 0.0 0.1 127.7 0.0 -4,-7 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000037958 Nsrp1 ENSMUST00000127758 ENSMUSP00000118119 TRANSLATION protein_coding stop - 5 78.0 0.0 0.0 0.0 27.5 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000037958 Nsrp1 ENSMUST00000134685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014243 Zswim7 ENSMUST00000072916 ENSMUSP00000072688 TRANSLATION protein_coding - CCDS48816.1 1 152.0 0.0 4.08 0.0 32.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000010277 Bltp2 ENSMUST00000126928 - NO_TRANSLATION retained_intron ENSMUSG00000010277 Bltp2 ENSMUST00000132756 - NO_TRANSLATION retained_intron ENSMUSG00000010277 Bltp2 ENSMUST00000141331 - NO_TRANSLATION retained_intron ENSMUSG00000010277 Bltp2 ENSMUST00000125459 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010277 Bltp2 ENSMUST00000145145 ENSMUSP00000119105 TRANSLATION nonsense_mediated_decay start - 3 97.0 0.0 0.0 0.0 54.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000010277 Bltp2 ENSMUST00000147432 - NO_TRANSLATION retained_intron ENSMUSG00000010277 Bltp2 ENSMUST00000136184 - NO_TRANSLATION retained_intron ENSMUSG00000010277 Bltp2 ENSMUST00000010421 ENSMUSP00000010421 TRANSLATION protein_coding - CCDS25097.1 1 2234.0 0.0 0.0 0.0 660.5 0.0 1,-3 1.0 27 6.0 PRINCIPAL:1 ENSMUSG00000020798 Spns3 ENSMUST00000021154 ENSMUSP00000021154 TRANSLATION protein_coding - - 1 492.0 0.0 1.17 0.1 94.4 14.0 -4,-6 0.0296 - 9.0 MINOR ENSMUSG00000020798 Spns3 ENSMUST00000155774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020798 Spns3 ENSMUST00000092940 ENSMUSP00000090617 TRANSLATION protein_coding - CCDS24987.1 1 514.0 0.0 1.62 3.0 116.6 14.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000025582 Nptx1 ENSMUST00000026670 ENSMUSP00000026670 TRANSLATION protein_coding - CCDS25719.1 1 432.0 0.0 3.0 9.3 116.0 0.0 4,-1 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000020728 Cep112 ENSMUST00000183042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020728 Cep112 ENSMUST00000106718 ENSMUSP00000102329 TRANSLATION protein_coding - - 5 152.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000020728 Cep112 ENSMUST00000182249 - NO_TRANSLATION retained_intron ENSMUSG00000020728 Cep112 ENSMUST00000151755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020728 Cep112 ENSMUST00000061287 ENSMUSP00000050597 TRANSLATION protein_coding - CCDS36359.1 5 954.0 0.0 0.0 8.1 100.6 0.0 -4,-5 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000020728 Cep112 ENSMUST00000133670 ENSMUSP00000114627 TRANSLATION protein_coding start - 5 609.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0034 7 -2.0 MINOR ENSMUSG00000020728 Cep112 ENSMUST00000143212 - NO_TRANSLATION retained_intron ENSMUSG00000020728 Cep112 ENSMUST00000130515 ENSMUSP00000114569 TRANSLATION protein_coding - CCDS36359.1 5 954.0 0.0 0.0 8.1 100.6 0.0 -4,-5 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000020728 Cep112 ENSMUST00000106715 ENSMUSP00000102326 TRANSLATION protein_coding - CCDS48966.1 1 173.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0287 2 0.0 MINOR ENSMUSG00000020728 Cep112 ENSMUST00000132978 ENSMUSP00000138124 TRANSLATION protein_coding stop - 5 195.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000020728 Cep112 ENSMUST00000182735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020728 Cep112 ENSMUST00000150863 ENSMUSP00000122509 TRANSLATION protein_coding - - 5 1006.0 0.0 0.0 0.1 100.6 0.0 -4,-6 0.1697 10 6.0 MINOR ENSMUSG00000020728 Cep112 ENSMUST00000182729 ENSMUSP00000138235 TRANSLATION protein_coding - - 5 912.0 0.0 0.0 3.3 100.6 0.0 -4,-5 0.2796 9 6.972 MINOR ENSMUSG00000020728 Cep112 ENSMUST00000146912 ENSMUSP00000120601 TRANSLATION protein_coding stop - 5 225.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000020728 Cep112 ENSMUST00000149683 ENSMUSP00000114452 TRANSLATION protein_coding stop - 3 127.0 0.0 0.0 0.0 100.6 0.0 -4,-5 0.0256 1 -2.0 MINOR ENSMUSG00000020728 Cep112 ENSMUST00000129814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020728 Cep112 ENSMUST00000106724 ENSMUSP00000102335 TRANSLATION protein_coding - CCDS48967.1 1 102.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0272 1 0.0 MINOR ENSMUSG00000020728 Cep112 ENSMUST00000138538 ENSMUSP00000117192 TRANSLATION protein_coding stop - 5 561.0 0.0 0.0 0.0 100.6 0.0 -4,-5 0.0473 4 -2.0 MINOR ENSMUSG00000018916 Csf2 ENSMUST00000019060 ENSMUSP00000019060 TRANSLATION protein_coding - CCDS24692.1 1 141.0 0.0 3.1 8.4 207.7 0.0 2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018585 Atox1 ENSMUST00000108857 ENSMUSP00000104485 TRANSLATION protein_coding - CCDS36158.1 1 68.0 2.0 1.75 0.0 0.0 0.0 -4,-5 0.9961 6 8.0 PRINCIPAL:1 ENSMUSG00000018585 Atox1 ENSMUST00000138412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050288 Fzd2 ENSMUST00000057893 ENSMUSP00000091463 TRANSLATION protein_coding - CCDS25501.1 - 570.0 0.0 0.4 0.4 590.9 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039329 Tex19.1 ENSMUST00000155694 ENSMUSP00000114548 TRANSLATION protein_coding stop - 2 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039329 Tex19.1 ENSMUST00000039088 ENSMUSP00000048592 TRANSLATION protein_coding - CCDS25768.1 1 351.0 0.0 0.0 0.0 245.3 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000018973 Hoxb1 ENSMUST00000019117 ENSMUSP00000019117 TRANSLATION protein_coding - CCDS25300.1 1 297.0 0.0 0.8 10.4 76.9 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000018973 Hoxb1 ENSMUST00000123805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049489 Ccnq ENSMUST00000059468 ENSMUSP00000050658 TRANSLATION protein_coding - CCDS25114.1 - 250.0 0.0 1.0 4.9 47.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000055937 Krt28 ENSMUST00000006963 ENSMUSP00000006963 TRANSLATION protein_coding - CCDS48906.1 1 462.0 0.0 3.95 8.0 323.1 0.0 -4,0 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003949 Hlf ENSMUST00000004051 ENSMUSP00000004051 TRANSLATION protein_coding - CCDS25241.1 1 295.0 0.0 2.0 31.9 62.5 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000003949 Hlf ENSMUST00000145786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003949 Hlf ENSMUST00000043658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003949 Hlf ENSMUST00000107881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003949 Hlf ENSMUST00000176001 ENSMUSP00000135463 TRANSLATION protein_coding start - 2 142.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003949 Hlf ENSMUST00000137957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057723 Krt33b ENSMUST00000073890 ENSMUSP00000073552 TRANSLATION protein_coding - CCDS48928.1 1 404.0 0.0 4.27 11.0 362.4 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020326 Ccng1 ENSMUST00000020576 ENSMUSP00000020576 TRANSLATION protein_coding - CCDS24550.1 1 294.0 0.0 4.35 23.7 68.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020326 Ccng1 ENSMUST00000151359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037935 Smarce1 ENSMUST00000135040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037935 Smarce1 ENSMUST00000128215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037935 Smarce1 ENSMUST00000128707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037935 Smarce1 ENSMUST00000103133 ENSMUSP00000099422 TRANSLATION protein_coding - CCDS25374.1 1 411.0 0.0 3.8 18.3 65.9 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000037935 Smarce1 ENSMUST00000156160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037935 Smarce1 ENSMUST00000155062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017386 Traf4 ENSMUST00000149437 - NO_TRANSLATION retained_intron ENSMUSG00000017386 Traf4 ENSMUST00000017530 ENSMUSP00000017530 TRANSLATION protein_coding - CCDS25090.1 1 470.0 21.0 5.14 33.8 164.1 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000017386 Traf4 ENSMUST00000148218 - NO_TRANSLATION retained_intron ENSMUSG00000020514 Mrpl22 ENSMUST00000140997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020514 Mrpl22 ENSMUST00000020820 ENSMUSP00000020820 TRANSLATION protein_coding - CCDS24724.1 1 206.0 0.0 4.25 5.9 90.1 0.0 -4,0 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000020514 Mrpl22 ENSMUST00000133038 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020863 Luc7l3 ENSMUST00000165620 - NO_TRANSLATION retained_intron ENSMUSG00000020863 Luc7l3 ENSMUST00000171033 - NO_TRANSLATION retained_intron ENSMUSG00000020863 Luc7l3 ENSMUST00000135311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020863 Luc7l3 ENSMUST00000166312 ENSMUSP00000129919 TRANSLATION protein_coding - - 1 477.0 8.0 2.472 0.4 304.5 0.0 -4,-5 0.1466 9 18.0 MINOR ENSMUSG00000020863 Luc7l3 ENSMUST00000021226 ENSMUSP00000021226 TRANSLATION protein_coding - CCDS25252.1 1 491.0 8.0 2.472 8.8 304.5 0.0 -4,-5 0.6044 9 19.484 MINOR ENSMUSG00000020863 Luc7l3 ENSMUST00000138369 ENSMUSP00000128571 TRANSLATION nonsense_mediated_decay start - 3 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020863 Luc7l3 ENSMUST00000132623 ENSMUSP00000131166 TRANSLATION protein_coding start - 5 205.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 1 -2.0 MINOR ENSMUSG00000020863 Luc7l3 ENSMUST00000107821 ENSMUSP00000103451 TRANSLATION protein_coding - - 5 432.0 8.0 2.472 22.0 304.5 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020863 Luc7l3 ENSMUST00000107820 ENSMUSP00000103450 TRANSLATION protein_coding - - 5 432.0 8.0 2.472 22.0 304.5 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020863 Luc7l3 ENSMUST00000107822 ENSMUSP00000103452 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038351 Sgsm2 ENSMUST00000081799 ENSMUSP00000080489 TRANSLATION protein_coding - - 5 1050.0 0.0 4.77 8.0 222.9 0.0 -4,-5 0.9864 8 9.0 ALTERNATIVE:1 ENSMUSG00000038351 Sgsm2 ENSMUST00000148421 - NO_TRANSLATION retained_intron ENSMUSG00000038351 Sgsm2 ENSMUST00000057631 ENSMUSP00000050496 TRANSLATION protein_coding - CCDS36224.1 1 1005.0 0.0 4.77 7.1 222.9 0.0 -4,-5 1.0 8 8.613 PRINCIPAL:4 ENSMUSG00000038351 Sgsm2 ENSMUST00000123573 - NO_TRANSLATION retained_intron ENSMUSG00000038351 Sgsm2 ENSMUST00000156287 - NO_TRANSLATION retained_intron ENSMUSG00000000125 Wnt3 ENSMUST00000000127 ENSMUSP00000000127 TRANSLATION protein_coding - CCDS25523.1 1 355.0 0.0 3.0 28.8 410.0 0.0 3,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025153 Fasn ENSMUST00000055655 ENSMUSP00000052872 TRANSLATION protein_coding - CCDS25759.1 1 2504.0 34.0 41.35 1.1 1360.8 0.0 -4,-5 1.0 111 15.0 PRINCIPAL:3 ENSMUSG00000025153 Fasn ENSMUST00000206589 ENSMUSP00000145585 TRANSLATION protein_coding - - 5 2502.0 34.0 41.35 0.4 1359.3 0.0 -4,-5 0.7706 110 14.0 ALTERNATIVE:2 ENSMUSG00000025153 Fasn ENSMUST00000206637 - NO_TRANSLATION retained_intron ENSMUSG00000025153 Fasn ENSMUST00000205905 ENSMUSP00000146068 TRANSLATION protein_coding stop - 3 24.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0293 1 -2.0 MINOR ENSMUSG00000025153 Fasn ENSMUST00000146541 - NO_TRANSLATION retained_intron ENSMUSG00000025153 Fasn ENSMUST00000155276 - NO_TRANSLATION retained_intron ENSMUSG00000061718 Ppp1r1b ENSMUST00000137634 ENSMUSP00000123528 TRANSLATION protein_coding - CCDS83889.1 1 158.0 0.0 0.0 3.3 87.9 0.0 -4,-5 0.2642 8 1.472 MINOR ENSMUSG00000061718 Ppp1r1b ENSMUST00000150762 ENSMUSP00000121147 TRANSLATION protein_coding - CCDS83889.1 1 158.0 0.0 0.0 3.3 87.9 0.0 -4,-5 0.2642 8 1.472 MINOR ENSMUSG00000061718 Ppp1r1b ENSMUST00000152525 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061718 Ppp1r1b ENSMUST00000078694 ENSMUSP00000077760 TRANSLATION protein_coding - CCDS25344.1 1 194.0 0.0 0.0 5.9 179.0 0.0 -4,-6 1.0 9 8.0 PRINCIPAL:1 ENSMUSG00000061718 Ppp1r1b ENSMUST00000147415 - NO_TRANSLATION retained_intron ENSMUSG00000061718 Ppp1r1b ENSMUST00000132443 - NO_TRANSLATION retained_intron ENSMUSG00000061718 Ppp1r1b ENSMUST00000133700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041629 Fam104a ENSMUST00000120194 ENSMUSP00000113652 TRANSLATION protein_coding - CCDS25600.2 1 185.0 0.0 0.5 10.0 182.3 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000025793 Hgs ENSMUST00000141826 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025793 Hgs ENSMUST00000140862 ENSMUSP00000119396 TRANSLATION protein_coding stop - 5 245.0 8.0 6.3 0.0 192.6 0.0 -4,-6 0.0 12 -2.0 MINOR ENSMUSG00000025793 Hgs ENSMUST00000106205 ENSMUSP00000101811 TRANSLATION protein_coding - - 5 775.0 8.0 9.7 0.0 357.3 0.0 -4,-6 0.3552 17 18.0 MINOR ENSMUSG00000025793 Hgs ENSMUST00000135231 ENSMUSP00000115037 TRANSLATION protein_coding start/stop - 5 294.0 0.0 1.9 0.0 72.1 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000025793 Hgs ENSMUST00000106203 ENSMUSP00000101809 TRANSLATION protein_coding - CCDS49005.1 5 776.0 8.0 9.7 9.3 357.3 0.0 -4,-6 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000020706 Ftsj3 ENSMUST00000127803 - NO_TRANSLATION retained_intron ENSMUSG00000020706 Ftsj3 ENSMUST00000021048 ENSMUSP00000021048 TRANSLATION protein_coding - CCDS25552.1 1 838.0 17.0 4.2965 2.2 586.4 0.0 -4,-7 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000020706 Ftsj3 ENSMUST00000143729 - NO_TRANSLATION retained_intron ENSMUSG00000020706 Ftsj3 ENSMUST00000126938 - NO_TRANSLATION retained_intron ENSMUSG00000020706 Ftsj3 ENSMUST00000154635 - NO_TRANSLATION retained_intron ENSMUSG00000020706 Ftsj3 ENSMUST00000143884 - NO_TRANSLATION retained_intron ENSMUSG00000020806 Rhbdf2 ENSMUST00000126819 - NO_TRANSLATION retained_intron ENSMUSG00000020806 Rhbdf2 ENSMUST00000138125 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020806 Rhbdf2 ENSMUST00000103028 ENSMUSP00000099317 TRANSLATION protein_coding - CCDS25672.1 1 827.0 0.0 9.25 10.3 406.9 7.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000020806 Rhbdf2 ENSMUST00000103029 ENSMUSP00000099318 TRANSLATION protein_coding - CCDS25672.1 1 827.0 0.0 9.25 10.3 406.9 7.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000095312 Or1e23 ENSMUST00000092921 ENSMUSP00000091575 TRANSLATION protein_coding - CCDS25012.1 - 312.0 0.0 1.0 11.5 178.6 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020736 Nt5c ENSMUST00000106530 ENSMUSP00000102140 TRANSLATION protein_coding - - 3 194.0 6.0 3.915 0.0 78.3 0.0 -4,-6 0.0076 6 14.472 MINOR ENSMUSG00000020736 Nt5c ENSMUST00000021082 ENSMUSP00000021082 TRANSLATION protein_coding - CCDS25637.1 1 200.0 6.0 5.25 5.3 91.4 0.0 -4,-6 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000020736 Nt5c ENSMUST00000130668 - NO_TRANSLATION retained_intron ENSMUSG00000020736 Nt5c ENSMUST00000124778 - NO_TRANSLATION retained_intron ENSMUSG00000020736 Nt5c ENSMUST00000125940 - NO_TRANSLATION retained_intron ENSMUSG00000050538 B230217C12Rik ENSMUST00000170806 ENSMUSP00000148116 TRANSLATION protein_coding - - 1 25.0 0.0 0.75 0.0 0.0 0.0 -1,-5 0.6934 - 6.0 PRINCIPAL:1 ENSMUSG00000050538 B230217C12Rik ENSMUST00000155954 ENSMUSP00000147634 TRANSLATION protein_coding - - 1 25.0 0.0 0.75 0.0 0.0 0.0 -1,-5 0.6934 - 6.0 PRINCIPAL:1 ENSMUSG00000050538 B230217C12Rik ENSMUST00000054783 ENSMUSP00000127204 TRANSLATION protein_coding - CCDS36298.1 5 139.0 3.0 0.0 0.0 0.0 0.0 -4,-7 0.2677 - 3.0 MINOR ENSMUSG00000050538 B230217C12Rik ENSMUST00000164364 ENSMUSP00000147388 TRANSLATION protein_coding - - 1 25.0 0.0 0.75 0.0 0.0 0.0 -1,-5 0.6934 - 6.0 PRINCIPAL:1 ENSMUSG00000059610 Or2b11 ENSMUST00000215339 ENSMUSP00000149533 TRANSLATION protein_coding - CCDS24772.1 5 318.0 0.0 1.0 11.4 182.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059610 Or2b11 ENSMUST00000071943 ENSMUSP00000071835 TRANSLATION protein_coding - CCDS24772.1 - 318.0 0.0 1.0 11.4 182.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059610 Or2b11 ENSMUST00000214351 ENSMUSP00000149821 TRANSLATION protein_coding - CCDS24772.1 5 318.0 0.0 1.0 11.4 182.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020524 Gria1 ENSMUST00000036315 ENSMUSP00000044494 TRANSLATION protein_coding - CCDS48800.1 1 907.0 10.0 13.05 22.0 589.1 3.0 1,-2 1.0 20 18.0 PRINCIPAL:4 ENSMUSG00000020524 Gria1 ENSMUST00000125292 ENSMUSP00000133439 TRANSLATION protein_coding stop - 5 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0233 - -2.0 MINOR ENSMUSG00000020524 Gria1 ENSMUST00000151045 ENSMUSP00000117746 TRANSLATION protein_coding - CCDS56770.1 1 838.0 10.0 11.6 3.1 570.0 3.0 -4,-2 0.1297 19 10.702 MINOR ENSMUSG00000020524 Gria1 ENSMUST00000173531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020524 Gria1 ENSMUST00000094179 ENSMUSP00000091731 TRANSLATION protein_coding - CCDS36159.1 1 907.0 10.0 13.05 22.0 585.5 3.0 1,-2 0.9883 20 18.0 ALTERNATIVE:1 ENSMUSG00000039908 Slc26a11 ENSMUST00000123634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039908 Slc26a11 ENSMUST00000147366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039908 Slc26a11 ENSMUST00000050880 ENSMUSP00000050999 TRANSLATION protein_coding - CCDS25717.1 1 593.0 0.0 13.15 0.4 363.7 0.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000039908 Slc26a11 ENSMUST00000151612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059169 Krt40 ENSMUST00000074253 ENSMUSP00000073869 TRANSLATION protein_coding - CCDS36307.1 1 439.0 2.0 3.8 8.8 327.1 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000059169 Krt40 ENSMUST00000107443 ENSMUSP00000103067 TRANSLATION protein_coding - CCDS83897.1 1 359.0 2.0 2.05 0.3 162.6 0.0 -4,-5 0.0028 - 4.502 MINOR ENSMUSG00000006784 Odad4 ENSMUST00000006976 ENSMUSP00000006976 TRANSLATION protein_coding - - 1 506.0 0.0 2.645 0.1 12.9 0.0 -4,-5 0.7513 2 8.0 PRINCIPAL:2 ENSMUSG00000006784 Odad4 ENSMUST00000150331 - NO_TRANSLATION retained_intron ENSMUSG00000006784 Odad4 ENSMUST00000127389 - NO_TRANSLATION retained_intron ENSMUSG00000006784 Odad4 ENSMUST00000092684 ENSMUSP00000090355 TRANSLATION protein_coding - CCDS36331.1 1 624.0 0.0 2.645 0.0 12.9 0.0 -4,-5 0.3311 2 8.0 ALTERNATIVE:2 ENSMUSG00000006784 Odad4 ENSMUST00000132143 - NO_TRANSLATION retained_intron ENSMUSG00000070327 Rnf213 ENSMUST00000093902 ENSMUSP00000091429 TRANSLATION protein_coding - - 5 5152.0 0.0 43.58 0.0 0.0 0.0 -4,-5 0.8495 106 6.0 PRINCIPAL:5 ENSMUSG00000070327 Rnf213 ENSMUST00000131035 ENSMUSP00000115063 TRANSLATION protein_coding - - 5 5151.0 0.0 43.58 0.0 0.0 0.0 -4,-5 0.8495 106 6.0 ALTERNATIVE:2 ENSMUSG00000000594 Gm2a ENSMUST00000000608 ENSMUSP00000000608 TRANSLATION protein_coding - CCDS24707.1 1 193.0 0.0 3.0 2.2 114.9 0.0 3,-2 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000020286 1700093K21Rik ENSMUST00000169264 ENSMUSP00000131204 TRANSLATION protein_coding - CCDS24477.1 5 196.0 0.0 1.28 0.4 214.4 3.0 -4,-7 0.4966 - 8.0 ALTERNATIVE:2 ENSMUSG00000020286 1700093K21Rik ENSMUST00000239488 ENSMUSP00000159376 TRANSLATION protein_coding - CCDS24477.1 - 196.0 0.0 1.28 0.4 214.4 3.0 -4,-7 0.4966 - 8.0 ALTERNATIVE:2 ENSMUSG00000020286 1700093K21Rik ENSMUST00000020527 ENSMUSP00000020527 TRANSLATION protein_coding - - 1 178.0 0.0 1.28 1.0 214.4 3.0 0,-5 0.8356 - 8.0 PRINCIPAL:2 ENSMUSG00000020286 1700093K21Rik ENSMUST00000156629 ENSMUSP00000122399 TRANSLATION protein_coding stop - 5 19.0 0.0 0.0 0.0 0.0 0.0 -2,-7 0.0002 - -2.0 MINOR ENSMUSG00000020286 1700093K21Rik ENSMUST00000140122 ENSMUSP00000123063 TRANSLATION protein_coding stop - 3 29.0 0.0 1.08 0.0 0.0 3.0 -1,-5 0.0041 - -2.0 MINOR ENSMUSG00000000202 Btbd17 ENSMUST00000000206 ENSMUSP00000000206 TRANSLATION protein_coding - CCDS25610.1 1 478.0 0.0 0.2 8.6 102.0 0.0 0,-4 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000000202 Btbd17 ENSMUST00000156192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000202 Btbd17 ENSMUST00000156053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000202 Btbd17 ENSMUST00000141386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000202 Btbd17 ENSMUST00000146853 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000202 Btbd17 ENSMUST00000141481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000202 Btbd17 ENSMUST00000137965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017400 Stac2 ENSMUST00000131519 ENSMUSP00000118164 TRANSLATION protein_coding start/stop - 5 183.0 2.0 0.45 0.0 101.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000017400 Stac2 ENSMUST00000017544 ENSMUSP00000017544 TRANSLATION protein_coding - CCDS25338.1 1 408.0 8.0 4.75 12.5 235.5 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000069874 Irgm2 ENSMUST00000108836 ENSMUSP00000104464 TRANSLATION protein_coding - CCDS48803.1 1 395.0 15.0 0.64 0.1 538.3 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:2 ENSMUSG00000069874 Irgm2 ENSMUST00000209079 ENSMUSP00000146805 TRANSLATION protein_coding - - 2 407.0 15.0 0.64 0.0 538.3 0.0 -4,-5 0.1804 7 14.0 ALTERNATIVE:2 ENSMUSG00000069874 Irgm2 ENSMUST00000058704 ENSMUSP00000056001 TRANSLATION protein_coding - CCDS48803.1 2 395.0 15.0 0.64 0.1 538.3 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:2 ENSMUSG00000020695 Mrc2 ENSMUST00000151135 - NO_TRANSLATION retained_intron ENSMUSG00000020695 Mrc2 ENSMUST00000126931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020695 Mrc2 ENSMUST00000100335 ENSMUSP00000097909 TRANSLATION protein_coding - CCDS25539.1 1 1479.0 25.0 16.113 3.6 559.9 0.0 0,-5 1.0 22 19.0 PRINCIPAL:1 ENSMUSG00000020695 Mrc2 ENSMUST00000142905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020695 Mrc2 ENSMUST00000021038 ENSMUSP00000021038 TRANSLATION protein_coding - - 1 1053.0 21.0 12.548 0.0 401.9 0.0 0,-5 0.0058 16 3.336 MINOR ENSMUSG00000039741 Bahcc1 ENSMUST00000143667 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039741 Bahcc1 ENSMUST00000122148 ENSMUSP00000112827 TRANSLATION protein_coding - CCDS83943.1 1 2643.0 0.0 2.0 0.0 54.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039741 Bahcc1 ENSMUST00000118987 ENSMUSP00000112784 TRANSLATION protein_coding - CCDS83943.1 1 2643.0 0.0 2.0 0.0 54.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039741 Bahcc1 ENSMUST00000142439 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035198 Tubg1 ENSMUST00000043680 ENSMUSP00000048036 TRANSLATION protein_coding - CCDS25451.1 1 451.0 16.0 8.75 33.6 393.0 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000035198 Tubg1 ENSMUST00000137844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057967 Fgf18 ENSMUST00000020507 ENSMUSP00000020507 TRANSLATION protein_coding - CCDS24531.1 1 207.0 0.0 3.08 24.4 143.9 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057967 Fgf18 ENSMUST00000109363 ENSMUSP00000104987 TRANSLATION protein_coding - - 3 98.0 0.0 1.33 0.0 79.6 0.0 -4,-5 0.0 - 4.644 MINOR ENSMUSG00000018481 Appbp2 ENSMUST00000018625 ENSMUSP00000018625 TRANSLATION protein_coding - CCDS25193.1 1 585.0 0.0 12.5 26.9 58.6 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000023170 Gps2 ENSMUST00000134581 ENSMUSP00000136921 TRANSLATION protein_coding start - 3 90.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023170 Gps2 ENSMUST00000124596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023170 Gps2 ENSMUST00000116358 ENSMUSP00000112062 TRANSLATION protein_coding - CCDS24922.1 1 327.0 0.0 3.6 14.7 300.6 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000023170 Gps2 ENSMUST00000072581 ENSMUSP00000072389 TRANSLATION protein_coding - CCDS24922.1 5 327.0 0.0 3.6 14.7 300.6 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000023170 Gps2 ENSMUST00000057884 ENSMUSP00000054072 TRANSLATION protein_coding - CCDS24922.1 1 327.0 0.0 3.6 14.7 300.6 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000061306 Slc38a10 ENSMUST00000154444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061306 Slc38a10 ENSMUST00000076697 ENSMUSP00000075989 TRANSLATION protein_coding - CCDS49001.1 1 408.0 0.0 4.6 0.0 186.8 14.0 -4,-5 0.373 2 6.0 ALTERNATIVE:2 ENSMUSG00000061306 Slc38a10 ENSMUST00000179094 ENSMUSP00000136719 TRANSLATION protein_coding - - 5 1090.0 0.0 4.6 0.0 178.6 15.0 -4,-5 0.6502 18 6.0 ALTERNATIVE:2 ENSMUSG00000061306 Slc38a10 ENSMUST00000150315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061306 Slc38a10 ENSMUST00000129575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061306 Slc38a10 ENSMUST00000148503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061306 Slc38a10 ENSMUST00000045402 ENSMUSP00000048675 TRANSLATION protein_coding - CCDS49000.1 1 1082.0 0.0 4.6 0.0 178.6 15.0 -4,-5 0.6645 18 6.0 ALTERNATIVE:2 ENSMUSG00000061306 Slc38a10 ENSMUST00000103018 ENSMUSP00000099307 TRANSLATION protein_coding - CCDS25728.1 1 1090.0 0.0 4.6 0.0 178.6 15.0 -4,-5 1.0 18 6.0 PRINCIPAL:2 ENSMUSG00000061306 Slc38a10 ENSMUST00000132239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061306 Slc38a10 ENSMUST00000129128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061306 Slc38a10 ENSMUST00000053692 ENSMUSP00000057615 TRANSLATION protein_coding - CCDS49002.1 1 428.0 0.0 4.6 0.0 185.9 14.0 -4,-5 0.3445 2 6.0 ALTERNATIVE:2 ENSMUSG00000061306 Slc38a10 ENSMUST00000146641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061306 Slc38a10 ENSMUST00000124997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061306 Slc38a10 ENSMUST00000152859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061306 Slc38a10 ENSMUST00000135605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061306 Slc38a10 ENSMUST00000129710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020738 Sumo2 ENSMUST00000021084 ENSMUSP00000021084 TRANSLATION nonsense_mediated_decay - - 3 53.0 0.0 1.66 0.0 36.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020738 Sumo2 ENSMUST00000117589 ENSMUSP00000113883 TRANSLATION protein_coding - - 3 52.0 0.0 1.83 0.0 54.4 0.0 -4,-7 0.0 - 6.966 MINOR ENSMUSG00000020738 Sumo2 ENSMUST00000121185 ENSMUSP00000112594 TRANSLATION protein_coding - - 3 52.0 0.0 1.83 0.0 54.4 0.0 -4,-7 0.0 - 6.966 MINOR ENSMUSG00000020738 Sumo2 ENSMUST00000118155 ENSMUSP00000113108 TRANSLATION protein_coding - - 2 71.0 0.0 2.41 9.7 35.7 0.0 -4,-5 0.137 2 7.966 MINOR ENSMUSG00000020738 Sumo2 ENSMUST00000050672 - NO_TRANSLATION retained_intron ENSMUSG00000020738 Sumo2 ENSMUST00000140844 - NO_TRANSLATION retained_intron ENSMUSG00000020738 Sumo2 ENSMUST00000153892 ENSMUSP00000115044 TRANSLATION protein_coding - CCDS36374.1 1 95.0 0.0 3.16 33.1 90.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000070379 Or3a1c ENSMUST00000216722 ENSMUSP00000151050 TRANSLATION protein_coding - CCDS25026.1 5 315.0 0.0 1.0 12.5 177.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070379 Or3a1c ENSMUST00000073675 ENSMUSP00000073356 TRANSLATION protein_coding - CCDS25026.1 - 315.0 0.0 1.0 12.5 177.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000009894 Snap47 ENSMUST00000010038 ENSMUSP00000010038 TRANSLATION protein_coding - CCDS24767.1 1 413.0 0.0 0.0 9.6 0.0 0.0 -4,-5 1.0 18 3.0 PRINCIPAL:1 ENSMUSG00000009894 Snap47 ENSMUST00000125846 ENSMUSP00000119433 TRANSLATION protein_coding stop - 3 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0258 - -2.0 MINOR ENSMUSG00000009894 Snap47 ENSMUST00000120940 ENSMUSP00000113555 TRANSLATION protein_coding - - 1 329.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0309 17 0.0 MINOR ENSMUSG00000009894 Snap47 ENSMUST00000150297 ENSMUSP00000122508 TRANSLATION protein_coding stop - 3 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0111 2 -2.0 MINOR ENSMUSG00000009894 Snap47 ENSMUST00000136436 ENSMUSP00000115762 TRANSLATION protein_coding stop - 3 181.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0117 7 -2.0 MINOR ENSMUSG00000009894 Snap47 ENSMUST00000132969 ENSMUSP00000116170 TRANSLATION protein_coding stop - 2 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0114 5 -2.0 MINOR ENSMUSG00000009894 Snap47 ENSMUST00000156146 ENSMUSP00000121880 TRANSLATION protein_coding stop - 3 183.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0117 7 -2.0 MINOR ENSMUSG00000009894 Snap47 ENSMUST00000145550 ENSMUSP00000114816 TRANSLATION protein_coding stop - 5 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0111 2 -2.0 MINOR ENSMUSG00000000632 Sez6 ENSMUST00000151982 ENSMUSP00000132041 TRANSLATION nonsense_mediated_decay start - 5 452.0 3.0 2.95 0.0 76.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000632 Sez6 ENSMUST00000142542 - NO_TRANSLATION retained_intron ENSMUSG00000000632 Sez6 ENSMUST00000140630 ENSMUSP00000115660 TRANSLATION protein_coding start/stop - 3 278.0 3.0 3.6 0.0 128.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000000632 Sez6 ENSMUST00000138346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000632 Sez6 ENSMUST00000126866 - NO_TRANSLATION retained_intron ENSMUSG00000000632 Sez6 ENSMUST00000155087 - NO_TRANSLATION retained_intron ENSMUSG00000000632 Sez6 ENSMUST00000138749 - NO_TRANSLATION retained_intron ENSMUSG00000000632 Sez6 ENSMUST00000093995 ENSMUSP00000091532 TRANSLATION protein_coding - CCDS25087.1 1 991.0 3.0 7.9 2.1 282.0 2.0 2,-3 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000000632 Sez6 ENSMUST00000000646 ENSMUSP00000000646 TRANSLATION protein_coding - CCDS70255.1 1 977.0 3.0 7.5 1.1 282.0 2.0 2,-3 0.5237 5 14.293 MINOR ENSMUSG00000044749 Abca6 ENSMUST00000150988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044749 Abca6 ENSMUST00000044003 ENSMUSP00000035458 TRANSLATION protein_coding - CCDS25590.1 1 1624.0 18.0 10.263 1.1 338.1 0.0 -4,-2 1.0 16 19.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000108610 ENSMUSP00000104250 TRANSLATION protein_coding - CCDS24923.1 1 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000108608 ENSMUSP00000104248 TRANSLATION protein_coding - CCDS24923.1 5 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000108609 ENSMUSP00000104249 TRANSLATION protein_coding - CCDS24923.1 3 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000108611 ENSMUSP00000104251 TRANSLATION protein_coding - CCDS24923.1 1 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000071026 ENSMUSP00000068651 TRANSLATION protein_coding - CCDS24923.1 1 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000108613 ENSMUSP00000104253 TRANSLATION protein_coding - CCDS24923.1 1 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000108612 ENSMUSP00000104252 TRANSLATION protein_coding - CCDS24923.1 1 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000153652 ENSMUSP00000137459 TRANSLATION protein_coding - - 1 76.0 0.0 2.0 0.0 92.5 0.0 -4,-5 0.0022 4 8.502 MINOR ENSMUSG00000078812 Eif5a ENSMUST00000152589 ENSMUSP00000123402 TRANSLATION protein_coding stop - 3 149.0 0.0 3.75 17.8 87.1 0.0 -4,-5 0.6567 4 -2.0 MINOR ENSMUSG00000078812 Eif5a ENSMUST00000108607 ENSMUSP00000104247 TRANSLATION protein_coding - CCDS24923.1 3 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000070996 ENSMUSP00000067077 TRANSLATION protein_coding - CCDS24923.1 1 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000164359 ENSMUSP00000132717 TRANSLATION protein_coding - CCDS24923.1 5 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000078812 Eif5a ENSMUST00000043419 ENSMUSP00000047008 TRANSLATION protein_coding - CCDS24923.1 1 154.0 0.0 3.75 36.9 92.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000025577 Cbx2 ENSMUST00000139746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025577 Cbx2 ENSMUST00000026662 ENSMUSP00000026662 TRANSLATION protein_coding - CCDS25708.1 1 519.0 0.0 2.4 0.4 102.6 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000020399 Havcr2 ENSMUST00000109229 ENSMUSP00000104852 TRANSLATION protein_coding - - 1 232.0 4.0 2.13 0.0 34.5 1.0 3,-2 0.0043 1 12.094 MINOR ENSMUSG00000020399 Havcr2 ENSMUST00000020668 ENSMUSP00000020668 TRANSLATION protein_coding - CCDS36135.1 1 281.0 4.0 3.13 6.9 50.6 1.0 3,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000020411 Nipal4 ENSMUST00000020679 ENSMUSP00000020679 TRANSLATION protein_coding - CCDS24572.1 1 406.0 0.0 4.3 6.9 398.4 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000061469 Msantd5 ENSMUST00000126189 ENSMUSP00000155969 TRANSLATION protein_coding - - 5 225.0 0.0 1.75 0.1 0.0 0.0 -4,-5 0.6569 - 6.0 PRINCIPAL:1 ENSMUSG00000061469 Msantd5 ENSMUST00000074198 ENSMUSP00000156300 TRANSLATION protein_coding start/stop - 5 163.0 0.0 1.0 0.1 0.0 0.0 -4,-7 0.024 - -2.0 MINOR ENSMUSG00000020832 Eral1 ENSMUST00000021183 ENSMUSP00000021183 TRANSLATION protein_coding - CCDS48856.1 1 437.0 15.0 4.165 9.9 97.4 0.0 -4,0 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000020832 Eral1 ENSMUST00000135154 - NO_TRANSLATION retained_intron ENSMUSG00000020832 Eral1 ENSMUST00000139731 - NO_TRANSLATION retained_intron ENSMUSG00000018845 Unc45b ENSMUST00000108160 ENSMUSP00000103795 TRANSLATION protein_coding - - 5 931.0 0.0 12.2 12.2 131.5 0.0 -4,-5 0.847 38 9.0 ALTERNATIVE:1 ENSMUSG00000018845 Unc45b ENSMUST00000125499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018845 Unc45b ENSMUST00000018989 ENSMUSP00000018989 TRANSLATION protein_coding - CCDS36251.1 1 929.0 0.0 12.2 12.2 131.5 0.0 -4,-5 1.0 38 9.0 PRINCIPAL:4 ENSMUSG00000018845 Unc45b ENSMUST00000142336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018845 Unc45b ENSMUST00000164945 ENSMUSP00000129405 TRANSLATION protein_coding - - 5 931.0 0.0 12.2 12.2 131.5 0.0 -4,-5 0.847 38 9.0 ALTERNATIVE:1 ENSMUSG00000020793 Galr2 ENSMUST00000154277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020793 Galr2 ENSMUST00000055872 ENSMUSP00000054062 TRANSLATION protein_coding - CCDS25663.1 1 371.0 0.0 1.3 0.1 171.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075567 Krtap1-4 ENSMUST00000100479 ENSMUSP00000098048 TRANSLATION protein_coding - CCDS48908.1 - 188.0 0.0 0.0 0.0 173.4 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000007653 Gabrb2 ENSMUST00000143626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007653 Gabrb2 ENSMUST00000007797 ENSMUSP00000007797 TRANSLATION protein_coding - CCDS24555.1 1 474.0 0.0 6.5 33.9 330.6 3.0 2,-5 1.0 4 15.628 PRINCIPAL:1 ENSMUSG00000007653 Gabrb2 ENSMUST00000192403 ENSMUSP00000141868 TRANSLATION protein_coding - - 1 512.0 0.0 6.5 14.4 336.8 3.0 2,-5 0.6159 4 13.628 MINOR ENSMUSG00000007653 Gabrb2 ENSMUST00000136050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007653 Gabrb2 ENSMUST00000140463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000617 Grm6 ENSMUST00000000631 ENSMUSP00000000631 TRANSLATION protein_coding - CCDS48785.1 5 871.0 20.0 8.0 0.4 594.7 7.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000000617 Grm6 ENSMUST00000171427 ENSMUSP00000130728 TRANSLATION protein_coding - CCDS48785.1 5 871.0 20.0 8.0 0.4 594.7 7.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000000617 Grm6 ENSMUST00000156890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000617 Grm6 ENSMUST00000126890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020720 Psmd12 ENSMUST00000021063 ENSMUSP00000021063 TRANSLATION protein_coding - CCDS25568.1 1 456.0 0.0 10.5 28.7 82.2 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000020720 Psmd12 ENSMUST00000106752 ENSMUSP00000102363 TRANSLATION protein_coding - - 1 418.0 0.0 9.5 0.0 51.2 0.0 -4,-5 0.0006 11 7.74 MINOR ENSMUSG00000020720 Psmd12 ENSMUST00000106750 ENSMUSP00000102361 TRANSLATION protein_coding - - 5 436.0 0.0 9.75 1.0 82.2 0.0 -4,-5 0.0814 13 10.5 MINOR ENSMUSG00000020328 Nudcd2 ENSMUST00000020578 ENSMUSP00000020578 TRANSLATION protein_coding - CCDS24549.1 1 157.0 0.0 3.75 29.0 57.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020328 Nudcd2 ENSMUST00000127382 ENSMUSP00000123991 TRANSLATION protein_coding - CCDS70162.1 2 132.0 0.0 3.0 2.0 46.9 0.0 -4,-5 0.057 4 9.582 MINOR ENSMUSG00000020328 Nudcd2 ENSMUST00000141839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020328 Nudcd2 ENSMUST00000127057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020328 Nudcd2 ENSMUST00000144601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035385 Ccl2 ENSMUST00000124479 - NO_TRANSLATION retained_intron ENSMUSG00000035385 Ccl2 ENSMUST00000000193 ENSMUSP00000000193 TRANSLATION protein_coding - CCDS25139.1 1 148.0 0.0 1.8 0.0 83.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020721 Helz ENSMUST00000133862 ENSMUSP00000117498 TRANSLATION protein_coding start - 1 935.0 4.0 1.65 0.0 174.7 0.0 -3,-6 0.0131 10 -2.0 MINOR ENSMUSG00000020721 Helz ENSMUST00000154847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020721 Helz ENSMUST00000106746 ENSMUSP00000102357 TRANSLATION protein_coding - - 5 1964.0 13.0 2.116 0.4 245.3 0.0 -4,-5 0.33 25 14.0 ALTERNATIVE:2 ENSMUSG00000020721 Helz ENSMUST00000141730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020721 Helz ENSMUST00000075012 ENSMUSP00000074533 TRANSLATION protein_coding - CCDS25569.1 1 1965.0 13.0 2.05 0.4 246.6 0.0 -4,-5 0.6419 25 13.814 PRINCIPAL:3 ENSMUSG00000020721 Helz ENSMUST00000143634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020721 Helz ENSMUST00000153080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020721 Helz ENSMUST00000100305 ENSMUSP00000097878 TRANSLATION protein_coding - - 1 1616.0 13.0 2.116 0.0 245.3 0.0 -4,-5 0.8414 22 14.0 ALTERNATIVE:2 ENSMUSG00000070383 Or1e29 ENSMUST00000215418 ENSMUSP00000149734 TRANSLATION protein_coding - CCDS25015.1 5 312.0 0.0 1.0 10.5 189.4 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070383 Or1e29 ENSMUST00000124927 ENSMUSP00000115639 TRANSLATION protein_coding - CCDS25015.1 3 312.0 0.0 1.0 10.5 189.4 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070383 Or1e29 ENSMUST00000122224 ENSMUSP00000113364 TRANSLATION protein_coding - CCDS25015.1 2 312.0 0.0 1.0 10.5 189.4 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037944 Ccr7 ENSMUST00000103134 ENSMUSP00000099423 TRANSLATION protein_coding - CCDS25373.1 1 378.0 0.0 0.8 12.7 163.9 0.0 2,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000059923 Grb2 ENSMUST00000106495 ENSMUSP00000102104 TRANSLATION protein_coding - - 5 203.0 0.0 5.0 0.0 194.4 0.0 -4,-5 0.0036 16 10.14 MINOR ENSMUSG00000059923 Grb2 ENSMUST00000106499 ENSMUSP00000102108 TRANSLATION protein_coding - - 1 176.0 0.0 4.25 7.1 122.0 0.0 -4,-5 0.0894 11 4.976 MINOR ENSMUSG00000059923 Grb2 ENSMUST00000135065 ENSMUSP00000117539 TRANSLATION protein_coding stop - 5 71.0 0.0 2.25 0.0 62.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000059923 Grb2 ENSMUST00000021090 ENSMUSP00000021090 TRANSLATION protein_coding - CCDS25645.1 1 217.0 0.0 5.5 36.9 208.7 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000059923 Grb2 ENSMUST00000106497 ENSMUSP00000102106 TRANSLATION protein_coding - CCDS25645.1 1 217.0 0.0 5.5 36.9 208.7 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000078653 Cntd1 ENSMUST00000153438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078653 Cntd1 ENSMUST00000103107 ENSMUSP00000099396 TRANSLATION protein_coding - CCDS25461.1 1 334.0 0.0 1.34 1.4 22.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000078653 Cntd1 ENSMUST00000128735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020922 Lsm12 ENSMUST00000140429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020922 Lsm12 ENSMUST00000107156 ENSMUSP00000102774 TRANSLATION protein_coding - - 5 137.0 0.0 3.75 1.0 82.7 0.0 -4,-6 0.0247 1 8.802 MINOR ENSMUSG00000020922 Lsm12 ENSMUST00000153276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020922 Lsm12 ENSMUST00000137930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020922 Lsm12 ENSMUST00000021297 ENSMUSP00000021297 TRANSLATION protein_coding - CCDS25490.1 1 195.0 0.0 5.25 33.8 85.5 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000047040 Prr15l ENSMUST00000132865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047040 Prr15l ENSMUST00000054311 ENSMUSP00000056614 TRANSLATION protein_coding - CCDS25307.1 1 100.0 0.0 0.0 10.5 82.6 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000047040 Prr15l ENSMUST00000062172 ENSMUSP00000056647 TRANSLATION protein_coding - CCDS25307.1 1 100.0 0.0 0.0 10.5 82.6 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000047040 Prr15l ENSMUST00000107633 ENSMUSP00000103259 TRANSLATION protein_coding - CCDS25307.1 2 100.0 0.0 0.0 10.5 82.6 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000047040 Prr15l ENSMUST00000107636 ENSMUSP00000103262 TRANSLATION protein_coding - CCDS25307.1 1 100.0 0.0 0.0 10.5 82.6 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000058725 Gm11937 ENSMUST00000076478 ENSMUSP00000075802 TRANSLATION protein_coding - CCDS48910.1 - 131.0 0.0 0.0 6.9 38.2 0.0 -3,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000043602 Zfp3 ENSMUST00000060444 ENSMUSP00000054020 TRANSLATION protein_coding - CCDS24966.1 1 497.0 52.0 1.0 6.5 302.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000020460 Rps27a ENSMUST00000102844 ENSMUSP00000099908 TRANSLATION protein_coding - CCDS24497.1 1 156.0 4.0 3.75 35.7 211.3 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000020460 Rps27a ENSMUST00000102845 ENSMUSP00000099909 TRANSLATION protein_coding - CCDS24497.1 1 156.0 4.0 3.75 35.7 211.3 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000020460 Rps27a ENSMUST00000143418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020460 Rps27a ENSMUST00000147782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020460 Rps27a ENSMUST00000150739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003585 Sec14l2 ENSMUST00000145173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003585 Sec14l2 ENSMUST00000003681 ENSMUSP00000003681 TRANSLATION protein_coding - CCDS24377.1 1 403.0 0.0 10.0 9.8 143.3 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000003585 Sec14l2 ENSMUST00000133631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003585 Sec14l2 ENSMUST00000136420 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003585 Sec14l2 ENSMUST00000132421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003585 Sec14l2 ENSMUST00000123901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017781 Pitpna ENSMUST00000153768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017781 Pitpna ENSMUST00000140841 - NO_TRANSLATION retained_intron ENSMUSG00000017781 Pitpna ENSMUST00000102509 ENSMUSP00000099567 TRANSLATION nonsense_mediated_decay - - 5 99.0 0.0 2.66 0.0 165.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000017781 Pitpna ENSMUST00000143219 ENSMUSP00000115723 TRANSLATION protein_coding - CCDS25052.1 1 271.0 0.0 7.41 34.9 403.2 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000069816 Or1e17 ENSMUST00000092917 ENSMUSP00000090596 TRANSLATION protein_coding - CCDS36221.1 - 325.0 0.0 1.0 0.0 201.1 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000069816 Or1e17 ENSMUST00000214210 ENSMUSP00000150593 TRANSLATION protein_coding - CCDS36221.1 5 325.0 0.0 1.0 0.0 201.1 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020149 Rab1a ENSMUST00000109602 ENSMUSP00000105231 TRANSLATION protein_coding - - 5 138.0 14.0 2.75 0.0 83.3 0.0 -4,-6 0.0 6 3.33 MINOR ENSMUSG00000020149 Rab1a ENSMUST00000020358 ENSMUSP00000020358 TRANSLATION protein_coding - - 1 202.0 21.0 4.75 36.9 225.6 0.0 -4,-7 0.8882 7 18.0 ALTERNATIVE:1 ENSMUSG00000020149 Rab1a ENSMUST00000152728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020149 Rab1a ENSMUST00000109601 ENSMUSP00000105230 TRANSLATION protein_coding - - 5 126.0 13.0 2.75 1.0 86.6 0.0 -4,-7 0.0041 4 2.664 MINOR ENSMUSG00000020149 Rab1a ENSMUST00000163483 ENSMUSP00000127330 TRANSLATION protein_coding - CCDS36115.1 1 205.0 21.0 4.75 36.9 225.6 0.0 -4,-7 1.0 7 18.0 PRINCIPAL:4 ENSMUSG00000020149 Rab1a ENSMUST00000132285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017716 Birc5 ENSMUST00000081387 ENSMUSP00000079124 TRANSLATION protein_coding - CCDS25694.1 1 140.0 4.0 3.75 13.0 87.0 0.0 -4,-6 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000017716 Birc5 ENSMUST00000093906 ENSMUSP00000091433 TRANSLATION protein_coding - CCDS25695.1 1 121.0 4.0 3.165 0.0 87.0 0.0 -4,-6 0.0455 1 14.83 MINOR ENSMUSG00000046719 Nxph3 ENSMUST00000058866 ENSMUSP00000058254 TRANSLATION protein_coding - CCDS25278.1 1 252.0 0.0 0.48 11.3 323.5 0.0 -2,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000038909 Kat7 ENSMUST00000146365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038909 Kat7 ENSMUST00000138671 ENSMUSP00000121772 TRANSLATION protein_coding start - 3 150.0 24.0 3.5 0.0 246.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038909 Kat7 ENSMUST00000107733 ENSMUSP00000103361 TRANSLATION protein_coding - CCDS56798.1 1 581.0 29.0 7.2 14.7 338.8 0.0 -4,-6 0.8633 11 20.264 MINOR ENSMUSG00000038909 Kat7 ENSMUST00000144456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038909 Kat7 ENSMUST00000107734 ENSMUSP00000103362 TRANSLATION protein_coding - CCDS56799.1 1 611.0 29.0 7.2 25.2 338.8 0.0 -4,-6 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000038909 Kat7 ENSMUST00000149356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038909 Kat7 ENSMUST00000072621 ENSMUSP00000072416 TRANSLATION protein_coding - - 5 583.0 29.0 7.2 0.1 338.8 0.0 -4,-5 0.0901 11 18.0 MINOR ENSMUSG00000038909 Kat7 ENSMUST00000103159 ENSMUSP00000099448 TRANSLATION protein_coding - CCDS25275.1 1 522.0 29.0 7.2 0.0 338.8 0.0 -4,-6 0.1394 7 18.0 MINOR ENSMUSG00000038909 Kat7 ENSMUST00000092766 ENSMUSP00000090441 TRANSLATION protein_coding - - 5 613.0 29.0 7.2 2.3 338.8 0.0 -4,-5 0.3048 11 18.216 MINOR ENSMUSG00000038909 Kat7 ENSMUST00000249615 ENSMUSP00000159824 TRANSLATION protein_coding - - - 637.0 29.0 7.2 0.0 338.8 0.0 -4,-5 0.0707 12 18.0 MINOR ENSMUSG00000038909 Kat7 ENSMUST00000143171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038909 Kat7 ENSMUST00000154327 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038560 Sp6 ENSMUST00000047997 ENSMUSP00000039307 TRANSLATION protein_coding - CCDS25309.1 1 376.0 12.0 0.2 11.0 68.1 0.0 -4,-6 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000038560 Sp6 ENSMUST00000107622 ENSMUSP00000103248 TRANSLATION protein_coding - CCDS25309.1 1 376.0 12.0 0.2 11.0 68.1 0.0 -4,-6 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000018900 Slc22a5 ENSMUST00000152084 ENSMUSP00000115474 TRANSLATION nonsense_mediated_decay start - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018900 Slc22a5 ENSMUST00000136307 ENSMUSP00000118900 TRANSLATION nonsense_mediated_decay - - 2 146.0 0.0 1.0 0.0 0.0 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000018900 Slc22a5 ENSMUST00000019044 ENSMUSP00000019044 TRANSLATION protein_coding - CCDS24687.1 1 557.0 0.0 8.0 16.3 93.6 11.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000020614 Fam20a ENSMUST00000020938 ENSMUSP00000020938 TRANSLATION protein_coding - CCDS25584.1 1 541.0 0.0 8.6 1.4 332.0 0.0 0,-4 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000020614 Fam20a ENSMUST00000146408 - NO_TRANSLATION retained_intron ENSMUSG00000020614 Fam20a ENSMUST00000144972 - NO_TRANSLATION retained_intron ENSMUSG00000020614 Fam20a ENSMUST00000155559 ENSMUSP00000116687 TRANSLATION nonsense_mediated_decay - CCDS25584.1 1 541.0 0.0 8.6 1.4 332.0 0.0 0,-4 1.0 1 -2.0 MINOR ENSMUSG00000052234 Epx ENSMUST00000049768 ENSMUSP00000050497 TRANSLATION protein_coding - CCDS25220.1 1 716.0 24.0 10.4 4.7 605.6 0.0 1,-3 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000052234 Epx ENSMUST00000125590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020534 Shmt1 ENSMUST00000135081 - NO_TRANSLATION retained_intron ENSMUSG00000020534 Shmt1 ENSMUST00000172804 - NO_TRANSLATION retained_intron ENSMUSG00000020534 Shmt1 ENSMUST00000124227 - NO_TRANSLATION retained_intron ENSMUSG00000020534 Shmt1 ENSMUST00000172659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020534 Shmt1 ENSMUST00000173698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020534 Shmt1 ENSMUST00000174093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020534 Shmt1 ENSMUST00000174174 ENSMUSP00000134703 TRANSLATION nonsense_mediated_decay start - 5 122.0 2.0 1.75 0.0 81.1 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000020534 Shmt1 ENSMUST00000174719 ENSMUSP00000134318 TRANSLATION protein_coding start - 5 439.0 18.0 9.83 0.0 446.8 0.0 -4,-5 0.0019 17 -2.0 MINOR ENSMUSG00000020534 Shmt1 ENSMUST00000018744 ENSMUSP00000018744 TRANSLATION protein_coding - CCDS24799.1 1 478.0 20.0 10.83 0.1 697.6 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000020534 Shmt1 ENSMUST00000174214 ENSMUSP00000134269 TRANSLATION protein_coding start - 5 441.0 19.0 9.83 0.0 641.5 0.0 -4,-5 0.0294 16 -2.0 MINOR ENSMUSG00000020534 Shmt1 ENSMUST00000173260 - NO_TRANSLATION retained_intron ENSMUSG00000044072 Eml6 ENSMUST00000169980 - NO_TRANSLATION retained_intron ENSMUSG00000044072 Eml6 ENSMUST00000109452 ENSMUSP00000105078 TRANSLATION nonsense_mediated_decay start - 3 88.0 0.0 0.33 0.0 0.0 0.0 -2,-4 0.0 - -2.0 MINOR ENSMUSG00000044072 Eml6 ENSMUST00000142651 - NO_TRANSLATION retained_intron ENSMUSG00000044072 Eml6 ENSMUST00000137017 - NO_TRANSLATION retained_intron ENSMUSG00000044072 Eml6 ENSMUST00000123881 - NO_TRANSLATION retained_intron ENSMUSG00000044072 Eml6 ENSMUST00000058902 ENSMUSP00000051080 TRANSLATION protein_coding - - 5 1958.0 0.0 17.046 23.4 421.1 0.0 -4,-7 1.0 24 16.0 PRINCIPAL:1 ENSMUSG00000044072 Eml6 ENSMUST00000137689 ENSMUSP00000116197 TRANSLATION nonsense_mediated_decay start - 5 83.0 0.0 0.764 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000002055 Spag5 ENSMUST00000141026 - NO_TRANSLATION retained_intron ENSMUSG00000002055 Spag5 ENSMUST00000133579 - NO_TRANSLATION retained_intron ENSMUSG00000002055 Spag5 ENSMUST00000146068 - NO_TRANSLATION retained_intron ENSMUSG00000002055 Spag5 ENSMUST00000149711 - NO_TRANSLATION retained_intron ENSMUSG00000002055 Spag5 ENSMUST00000128359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002055 Spag5 ENSMUST00000045026 ENSMUSP00000045286 TRANSLATION protein_coding - CCDS25098.1 1 1165.0 0.0 0.0 0.0 0.0 0.0 -4,-2 1.0 7 0.0 PRINCIPAL:1 ENSMUSG00000002055 Spag5 ENSMUST00000125477 - NO_TRANSLATION retained_intron ENSMUSG00000002055 Spag5 ENSMUST00000150016 - NO_TRANSLATION retained_intron ENSMUSG00000051232 Tmem199 ENSMUST00000052566 ENSMUSP00000058599 TRANSLATION protein_coding - CCDS25108.1 1 208.0 0.0 0.0 12.5 91.9 0.0 -4,-7 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000051232 Tmem199 ENSMUST00000132433 - NO_TRANSLATION retained_intron ENSMUSG00000051232 Tmem199 ENSMUST00000148393 - NO_TRANSLATION retained_intron ENSMUSG00000051232 Tmem199 ENSMUST00000135946 - NO_TRANSLATION retained_intron ENSMUSG00000020802 Ube2o ENSMUST00000082152 ENSMUSP00000080791 TRANSLATION protein_coding - CCDS25670.1 1 1288.0 0.0 1.8 0.0 83.3 0.0 -2,-3 1.0 35 12.0 PRINCIPAL:1 ENSMUSG00000020802 Ube2o ENSMUST00000147851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020802 Ube2o ENSMUST00000134102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033953 Ppp3r1 ENSMUST00000154425 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033953 Ppp3r1 ENSMUST00000102880 ENSMUSP00000099944 TRANSLATION protein_coding - CCDS24448.1 1 170.0 25.0 3.75 32.4 88.9 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000047804 Akap10 ENSMUST00000143952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047804 Akap10 ENSMUST00000108710 ENSMUSP00000104350 TRANSLATION protein_coding - - 2 560.0 0.0 2.325 0.0 81.9 0.0 -4,-2 0.0255 15 10.002 MINOR ENSMUSG00000047804 Akap10 ENSMUST00000102650 ENSMUSP00000099710 TRANSLATION protein_coding - CCDS24821.1 1 662.0 0.0 3.325 10.0 81.2 0.0 -4,-2 1.0 18 14.946 PRINCIPAL:1 ENSMUSG00000047804 Akap10 ENSMUST00000058173 ENSMUSP00000054418 TRANSLATION protein_coding - - 2 505.0 0.0 2.325 0.0 81.9 0.0 -4,-6 0.0125 15 10.002 MINOR ENSMUSG00000047804 Akap10 ENSMUST00000137323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086962 Faxdc2 ENSMUST00000137124 ENSMUSP00000151429 TRANSLATION protein_coding start/stop - 5 311.0 0.0 6.6 2.2 72.8 5.0 1,-3 1.0 1 -2.0 MINOR ENSMUSG00000086962 Faxdc2 ENSMUST00000218429 ENSMUSP00000151952 TRANSLATION protein_coding - - 5 295.0 0.0 6.066 0.0 72.8 4.0 -4,-2 0.0365 1 6.932 ALTERNATIVE:2 ENSMUSG00000086962 Faxdc2 ENSMUST00000219877 ENSMUSP00000151997 TRANSLATION protein_coding - - 5 313.0 0.0 6.6 0.0 72.8 5.0 1,-3 0.6722 1 8.0 PRINCIPAL:2 ENSMUSG00000032878 Ccdc85a ENSMUST00000042534 ENSMUSP00000044649 TRANSLATION protein_coding - CCDS48760.1 1 460.0 0.0 1.2 4.2 316.7 0.0 -4,-5 0.8291 5 10.0 ALTERNATIVE:2 ENSMUSG00000032878 Ccdc85a ENSMUST00000160016 ENSMUSP00000125648 TRANSLATION protein_coding start - 5 152.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032878 Ccdc85a ENSMUST00000146385 ENSMUSP00000124972 TRANSLATION protein_coding - CCDS83786.1 5 545.0 0.0 1.2 3.3 316.7 0.0 -4,-5 0.7527 5 9.438 ALTERNATIVE:2 ENSMUSG00000032878 Ccdc85a ENSMUST00000140601 ENSMUSP00000124184 TRANSLATION protein_coding start - 3 144.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000032878 Ccdc85a ENSMUST00000093253 ENSMUSP00000090941 TRANSLATION protein_coding - CCDS24489.1 1 500.0 0.0 1.2 4.2 316.7 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000032878 Ccdc85a ENSMUST00000109501 - NO_TRANSLATION retained_intron ENSMUSG00000018559 Ctdnep1 ENSMUST00000108593 ENSMUSP00000104234 TRANSLATION protein_coding - CCDS24927.1 1 244.0 10.0 7.0 25.0 180.7 0.0 -1,0 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000018559 Ctdnep1 ENSMUST00000138246 - NO_TRANSLATION retained_intron ENSMUSG00000018559 Ctdnep1 ENSMUST00000152226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018559 Ctdnep1 ENSMUST00000141623 ENSMUSP00000137199 TRANSLATION protein_coding stop - 3 89.0 4.0 2.5 0.0 98.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000018559 Ctdnep1 ENSMUST00000131531 - NO_TRANSLATION retained_intron ENSMUSG00000020882 Cacnb1 ENSMUST00000092736 ENSMUSP00000090412 TRANSLATION protein_coding - CCDS25336.1 1 524.0 0.0 7.75 7.7 247.7 0.0 -4,-6 0.8386 8 9.95 ALTERNATIVE:1 ENSMUSG00000020882 Cacnb1 ENSMUST00000017552 ENSMUSP00000017552 TRANSLATION protein_coding - CCDS25335.1 1 597.0 0.0 8.08 8.7 247.7 0.0 -4,-6 1.0 9 11.0 PRINCIPAL:3 ENSMUSG00000020882 Cacnb1 ENSMUST00000124170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020882 Cacnb1 ENSMUST00000107562 ENSMUSP00000103187 TRANSLATION protein_coding - CCDS48899.1 1 479.0 0.0 8.08 1.0 247.7 0.0 -4,-6 0.3805 8 8.0 MINOR ENSMUSG00000020882 Cacnb1 ENSMUST00000107561 ENSMUSP00000103186 TRANSLATION protein_coding - CCDS48898.1 1 477.0 0.0 7.75 1.5 247.7 0.0 -4,-5 0.3081 7 7.535 MINOR ENSMUSG00000020882 Cacnb1 ENSMUST00000135462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006931 P3h4 ENSMUST00000141840 ENSMUSP00000135217 TRANSLATION protein_coding start/stop - 3 103.0 0.0 1.2 0.0 0.0 0.0 -4,-6 0.0069 1 -2.0 MINOR ENSMUSG00000006931 P3h4 ENSMUST00000066489 ENSMUSP00000065278 TRANSLATION protein_coding - CCDS25421.1 1 443.0 0.0 5.25 0.0 0.0 0.0 4,-1 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000009588 St6galnac1 ENSMUST00000009732 ENSMUSP00000009732 TRANSLATION protein_coding - CCDS36380.1 1 526.0 10.0 7.2 0.0 252.0 0.0 -1,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000020448 Rnf185 ENSMUST00000064364 ENSMUSP00000067053 TRANSLATION protein_coding - CCDS24361.1 1 228.0 8.0 1.08 0.0 41.1 2.0 -4,-7 0.1622 - 18.0 MINOR ENSMUSG00000020448 Rnf185 ENSMUST00000077078 ENSMUSP00000076333 TRANSLATION protein_coding - CCDS70127.1 1 192.0 8.0 1.08 25.9 41.1 2.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000020448 Rnf185 ENSMUST00000144055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075588 Hoxb2 ENSMUST00000100523 ENSMUSP00000098092 TRANSLATION protein_coding - CCDS36290.1 1 354.0 0.0 0.5 7.2 76.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075588 Hoxb2 ENSMUST00000182030 - NO_TRANSLATION retained_intron ENSMUSG00000002064 Sdf2 ENSMUST00000002133 ENSMUSP00000002133 TRANSLATION protein_coding - - 1 211.0 0.0 3.0 10.9 45.2 0.0 3,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000002064 Sdf2 ENSMUST00000154080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002064 Sdf2 ENSMUST00000133020 - NO_TRANSLATION retained_intron ENSMUSG00000084135 Pom121l12 ENSMUST00000117584 ENSMUSP00000147960 TRANSLATION protein_coding - CCDS83783.1 - 278.0 0.0 0.0 0.0 29.0 0.0 -4,0 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000018451 6330403K07Rik ENSMUST00000156068 ENSMUSP00000158145 TRANSLATION nonsense_mediated_decay - - 1 121.0 0.0 0.2 7.4 0.0 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000018451 6330403K07Rik ENSMUST00000238695 ENSMUSP00000158674 TRANSLATION protein_coding - - - 121.0 0.0 0.2 7.4 0.0 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000025377 Tepsin ENSMUST00000152152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025377 Tepsin ENSMUST00000026442 ENSMUSP00000026442 TRANSLATION protein_coding - - 1 567.0 0.0 6.95 0.0 24.7 0.0 -4,-7 0.0669 9 5.34 MINOR ENSMUSG00000025377 Tepsin ENSMUST00000093901 ENSMUSP00000091428 TRANSLATION protein_coding - CCDS36387.1 1 573.0 0.0 7.28 0.1 32.5 0.0 -4,-7 1.0 9 8.0 PRINCIPAL:2 ENSMUSG00000025377 Tepsin ENSMUST00000131569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025377 Tepsin ENSMUST00000150094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025377 Tepsin ENSMUST00000106225 ENSMUSP00000101832 TRANSLATION protein_coding - - 5 505.0 0.0 7.28 0.0 32.5 0.0 -4,-7 0.0597 7 8.0 ALTERNATIVE:2 ENSMUSG00000020389 Cdkl3 ENSMUST00000120374 ENSMUSP00000113303 TRANSLATION protein_coding - CCDS48789.1 5 610.0 19.0 6.65 0.0 251.0 0.0 -4,-5 0.1836 1 18.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000109078 ENSMUSP00000104706 TRANSLATION protein_coding - CCDS48791.1 1 457.0 19.0 6.65 1.1 251.0 0.0 -4,-5 0.3657 - 18.054 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000135076 ENSMUSP00000117983 TRANSLATION protein_coding stop - 3 192.0 19.0 3.5 0.0 219.7 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000063303 ENSMUSP00000064315 TRANSLATION protein_coding - CCDS24665.1 1 595.0 19.0 6.65 4.7 251.0 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000020389 Cdkl3 ENSMUST00000109081 ENSMUSP00000104709 TRANSLATION protein_coding - CCDS48790.1 5 585.0 19.0 6.65 0.0 251.0 0.0 -4,-5 0.2126 1 18.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000109076 ENSMUSP00000104704 TRANSLATION protein_coding - CCDS48792.1 1 353.0 19.0 6.55 0.0 251.0 0.0 -4,-5 0.0932 - 17.802 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000150736 ENSMUSP00000118607 TRANSLATION nonsense_mediated_decay start - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000154701 ENSMUSP00000116009 TRANSLATION nonsense_mediated_decay start - 2 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000147874 ENSMUSP00000119505 TRANSLATION protein_coding start - 2 138.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000136021 ENSMUSP00000117315 TRANSLATION protein_coding start - 3 92.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000143228 ENSMUSP00000123279 TRANSLATION nonsense_mediated_decay - - 1 591.0 19.0 6.65 0.0 251.0 0.0 -4,-5 0.1583 1 -2.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000109079 ENSMUSP00000104707 TRANSLATION protein_coding - CCDS48788.1 5 581.0 19.0 6.65 0.0 251.0 0.0 -4,-5 0.191 1 18.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000109080 ENSMUSP00000104708 TRANSLATION protein_coding - CCDS48789.1 1 610.0 19.0 6.65 0.0 251.0 0.0 -4,-5 0.1836 1 18.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000121591 ENSMUSP00000112477 TRANSLATION protein_coding - CCDS48790.1 1 585.0 19.0 6.65 0.0 251.0 0.0 -4,-5 0.2126 1 18.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000063321 ENSMUSP00000065128 TRANSLATION protein_coding - CCDS48788.1 1 581.0 19.0 6.65 0.0 251.0 0.0 -4,-5 0.191 1 18.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000109077 ENSMUSP00000104705 TRANSLATION protein_coding - CCDS48792.1 5 353.0 19.0 6.55 0.0 251.0 0.0 -4,-5 0.0932 - 17.802 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000128853 ENSMUSP00000121945 TRANSLATION nonsense_mediated_decay start - 5 224.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000020389 Cdkl3 ENSMUST00000207272 ENSMUSP00000147107 TRANSLATION nonsense_mediated_decay start - 3 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034773 Hrob ENSMUST00000100392 ENSMUSP00000097961 TRANSLATION protein_coding - CCDS36342.1 1 615.0 0.0 3.75 0.0 102.1 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000034773 Hrob ENSMUST00000133930 ENSMUSP00000137686 TRANSLATION nonsense_mediated_decay - - 1 604.0 0.0 3.75 0.0 102.1 0.0 -4,-5 0.1377 1 -2.0 MINOR ENSMUSG00000034773 Hrob ENSMUST00000148867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034773 Hrob ENSMUST00000152897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034773 Hrob ENSMUST00000140040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020413 Hus1 ENSMUST00000139877 - NO_TRANSLATION retained_intron ENSMUSG00000020413 Hus1 ENSMUST00000146002 - NO_TRANSLATION retained_intron ENSMUSG00000020413 Hus1 ENSMUST00000020683 ENSMUSP00000020683 TRANSLATION protein_coding - CCDS24429.1 1 281.0 0.0 7.0 26.1 288.9 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020413 Hus1 ENSMUST00000129115 ENSMUSP00000114339 TRANSLATION nonsense_mediated_decay - CCDS24429.1 1 281.0 0.0 7.0 26.1 288.9 0.0 -4,-7 1.0 4 -2.0 MINOR ENSMUSG00000020413 Hus1 ENSMUST00000127578 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020413 Hus1 ENSMUST00000152890 - NO_TRANSLATION retained_intron ENSMUSG00000056921 Or1e34 ENSMUST00000071478 ENSMUSP00000071415 TRANSLATION protein_coding - CCDS25019.1 - 310.0 0.0 1.0 10.5 187.2 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056921 Or1e34 ENSMUST00000216608 ENSMUSP00000149527 TRANSLATION protein_coding - CCDS25019.1 5 310.0 0.0 1.0 10.5 187.2 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056921 Or1e34 ENSMUST00000214284 ENSMUSP00000150236 TRANSLATION protein_coding - CCDS25019.1 5 310.0 0.0 1.0 10.5 187.2 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020152 Actr2 ENSMUST00000000137 ENSMUSP00000000137 TRANSLATION protein_coding - CCDS24455.1 1 394.0 20.0 8.25 34.9 390.9 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000020152 Actr2 ENSMUST00000132022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020152 Actr2 ENSMUST00000134779 - NO_TRANSLATION retained_intron ENSMUSG00000017718 Afmid ENSMUST00000148016 - NO_TRANSLATION retained_intron ENSMUSG00000017718 Afmid ENSMUST00000153850 - NO_TRANSLATION retained_intron ENSMUSG00000017718 Afmid ENSMUST00000131268 - NO_TRANSLATION retained_intron ENSMUSG00000017718 Afmid ENSMUST00000073388 ENSMUSP00000073102 TRANSLATION protein_coding - CCDS25693.1 1 305.0 11.0 8.41 1.3 45.2 0.0 -4,-7 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000017718 Afmid ENSMUST00000139945 - NO_TRANSLATION retained_intron ENSMUSG00000017718 Afmid ENSMUST00000149668 ENSMUSP00000119310 TRANSLATION protein_coding start - 1 363.0 11.0 8.08 0.0 44.8 0.0 -4,-5 0.0367 3 -2.0 MINOR ENSMUSG00000040838 Gm11639 ENSMUST00000212287 ENSMUSP00000148433 TRANSLATION protein_coding - - 5 5808.0 21.0 4.129 0.0 74.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000040838 Gm11639 ENSMUST00000148007 ENSMUSP00000116040 TRANSLATION protein_coding - - 5 1124.0 3.0 3.049 0.0 21.6 0.0 -4,-5 0.0139 - 5.592 MINOR ENSMUSG00000040838 Gm11639 ENSMUST00000175713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058756 Thra ENSMUST00000150693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058756 Thra ENSMUST00000152195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058756 Thra ENSMUST00000103139 ENSMUSP00000099428 TRANSLATION protein_coding - CCDS25362.1 1 410.0 27.0 7.08 26.8 168.5 0.0 -4,-5 1.0 1 21.982 PRINCIPAL:1 ENSMUSG00000058756 Thra ENSMUST00000153468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058756 Thra ENSMUST00000124130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058756 Thra ENSMUST00000064187 ENSMUSP00000068281 TRANSLATION protein_coding - CCDS83893.1 1 492.0 27.0 6.08 1.1 164.5 0.0 -4,-5 0.0687 2 15.76 MINOR ENSMUSG00000058756 Thra ENSMUST00000153043 ENSMUSP00000123056 TRANSLATION protein_coding stop - 3 64.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058756 Thra ENSMUST00000124072 ENSMUSP00000115323 TRANSLATION protein_coding stop - 1 413.0 26.0 6.28 0.0 168.8 0.0 -4,-5 0.1068 2 -2.0 MINOR ENSMUSG00000058756 Thra ENSMUST00000142944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050132 Sarm1 ENSMUST00000153534 - NO_TRANSLATION retained_intron ENSMUSG00000050132 Sarm1 ENSMUST00000170674 - NO_TRANSLATION retained_intron ENSMUSG00000050132 Sarm1 ENSMUST00000130955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050132 Sarm1 ENSMUST00000061174 ENSMUSP00000051059 TRANSLATION protein_coding - CCDS25105.1 1 724.0 0.0 8.8 14.6 163.7 0.0 -4,-2 1.0 17 15.682 PRINCIPAL:1 ENSMUSG00000050132 Sarm1 ENSMUST00000108287 ENSMUSP00000103922 TRANSLATION protein_coding - CCDS48857.1 1 764.0 0.0 8.96 0.7 160.3 0.0 -4,-2 0.2603 17 11.796 MINOR ENSMUSG00000047821 Trim16 ENSMUST00000108703 ENSMUSP00000104343 TRANSLATION protein_coding - - 1 469.0 9.0 4.34 0.0 139.0 0.0 -4,-5 0.023 14 15.336 MINOR ENSMUSG00000047821 Trim16 ENSMUST00000147942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047821 Trim16 ENSMUST00000055006 ENSMUSP00000055542 TRANSLATION protein_coding - CCDS24832.1 1 556.0 13.0 4.34 5.9 139.0 0.0 -4,-5 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000047821 Trim16 ENSMUST00000072639 ENSMUSP00000072432 TRANSLATION protein_coding - - 2 488.0 13.0 3.34 0.0 97.2 0.0 -4,-5 0.0 13 13.494 MINOR ENSMUSG00000047821 Trim16 ENSMUST00000128623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069814 Ccdc92b ENSMUST00000100866 ENSMUSP00000098429 TRANSLATION protein_coding - CCDS25033.1 1 299.0 0.0 2.3 0.1 68.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044296 Zfp879 ENSMUST00000109133 ENSMUSP00000104761 TRANSLATION protein_coding - CCDS70178.1 5 490.0 52.0 1.0 0.0 280.3 0.0 -4,-5 0.1947 - 12.708 MINOR ENSMUSG00000044296 Zfp879 ENSMUST00000049625 ENSMUSP00000061782 TRANSLATION protein_coding - CCDS24638.1 1 563.0 52.0 1.0 2.4 368.5 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000044296 Zfp879 ENSMUST00000109134 ENSMUSP00000104762 TRANSLATION protein_coding - CCDS24638.1 5 563.0 52.0 1.0 2.4 368.5 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000018398 Septin8 ENSMUST00000120878 ENSMUSP00000113775 TRANSLATION protein_coding - - 5 440.0 13.0 7.83 5.3 317.8 0.0 -4,-5 0.3171 11 14.76 MINOR ENSMUSG00000018398 Septin8 ENSMUST00000142800 ENSMUSP00000124057 TRANSLATION protein_coding stop - 5 51.0 0.0 1.0 0.0 28.6 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000018398 Septin8 ENSMUST00000121334 ENSMUSP00000113038 TRANSLATION protein_coding - CCDS83805.1 5 484.0 13.0 7.83 21.9 329.4 0.0 -4,-5 0.9169 13 17.7 PRINCIPAL:3 ENSMUSG00000018398 Septin8 ENSMUST00000145927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018398 Septin8 ENSMUST00000108987 ENSMUSP00000104615 TRANSLATION protein_coding - CCDS56768.1 1 429.0 13.0 7.83 23.6 329.4 0.0 -4,-5 1.0 11 18.0 ALTERNATIVE:1 ENSMUSG00000018398 Septin8 ENSMUST00000117061 ENSMUSP00000112920 TRANSLATION protein_coding - CCDS48794.1 1 430.0 13.0 7.83 20.6 329.4 0.0 -4,-5 0.9879 11 17.468 ALTERNATIVE:1 ENSMUSG00000018398 Septin8 ENSMUST00000147912 ENSMUSP00000120427 TRANSLATION protein_coding - - 5 442.0 13.0 7.83 5.3 329.4 0.0 -4,-5 0.3611 11 14.76 MINOR ENSMUSG00000020457 Drg1 ENSMUST00000132159 ENSMUSP00000116520 TRANSLATION nonsense_mediated_decay - - 3 39.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020457 Drg1 ENSMUST00000159304 ENSMUSP00000125536 TRANSLATION nonsense_mediated_decay start - 5 69.0 0.0 1.56 0.0 43.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020457 Drg1 ENSMUST00000125424 - NO_TRANSLATION retained_intron ENSMUSG00000020457 Drg1 ENSMUST00000139430 - NO_TRANSLATION retained_intron ENSMUSG00000020457 Drg1 ENSMUST00000166162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020457 Drg1 ENSMUST00000020741 ENSMUSP00000020741 TRANSLATION protein_coding - CCDS24355.1 1 367.0 14.0 8.63 28.2 308.9 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000020457 Drg1 ENSMUST00000142605 - NO_TRANSLATION retained_intron ENSMUSG00000018548 Trim37 ENSMUST00000154138 ENSMUSP00000118260 TRANSLATION protein_coding start/stop - 5 339.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000018548 Trim37 ENSMUST00000152637 - NO_TRANSLATION retained_intron ENSMUSG00000018548 Trim37 ENSMUST00000041282 ENSMUSP00000049057 TRANSLATION protein_coding - CCDS25210.1 1 961.0 15.0 4.895 9.5 70.7 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000018548 Trim37 ENSMUST00000139532 ENSMUSP00000119269 TRANSLATION protein_coding stop - 5 197.0 7.0 2.25 0.0 38.8 0.0 -2,-5 0.0009 1 -2.0 MINOR ENSMUSG00000070377 Or1a1b ENSMUST00000206743 ENSMUSP00000146125 TRANSLATION protein_coding stop - 3 107.0 0.0 1.0 0.0 62.8 3.0 -4,-7 0.0015 - -2.0 MINOR ENSMUSG00000070377 Or1a1b ENSMUST00000205664 ENSMUSP00000145822 TRANSLATION protein_coding - CCDS25028.1 3 313.0 0.0 2.0 8.4 198.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070377 Or1a1b ENSMUST00000215550 ENSMUSP00000150560 TRANSLATION protein_coding - CCDS25028.1 3 313.0 0.0 2.0 8.4 198.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070377 Or1a1b ENSMUST00000078936 ENSMUSP00000077966 TRANSLATION protein_coding - CCDS25028.1 - 313.0 0.0 2.0 8.4 198.3 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062204 Or2y8 ENSMUST00000078264 ENSMUSP00000077384 TRANSLATION protein_coding - CCDS24667.1 - 311.0 0.0 1.0 10.7 155.9 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040938 Slc16a11 ENSMUST00000122852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040938 Slc16a11 ENSMUST00000123716 ENSMUSP00000114871 TRANSLATION nonsense_mediated_decay - - 1 61.0 0.0 1.0 0.0 0.0 3.0 -3,-5 0.0002 - -2.0 MINOR ENSMUSG00000040938 Slc16a11 ENSMUST00000144494 - NO_TRANSLATION retained_intron ENSMUSG00000040938 Slc16a11 ENSMUST00000171032 ENSMUSP00000128419 TRANSLATION protein_coding - - 5 447.0 0.0 5.83 10.5 81.1 19.0 -3,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000040938 Slc16a11 ENSMUST00000126388 ENSMUSP00000116648 TRANSLATION protein_coding - - 5 447.0 0.0 5.83 10.5 81.1 19.0 -3,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000040938 Slc16a11 ENSMUST00000131468 - NO_TRANSLATION retained_intron ENSMUSG00000040938 Slc16a11 ENSMUST00000153993 ENSMUSP00000122586 TRANSLATION protein_coding stop - 3 78.0 0.0 1.83 0.0 0.0 3.0 -3,-5 0.0002 - -2.0 MINOR ENSMUSG00000040938 Slc16a11 ENSMUST00000149880 - NO_TRANSLATION retained_intron ENSMUSG00000040938 Slc16a11 ENSMUST00000094055 ENSMUSP00000091597 TRANSLATION protein_coding - - 1 447.0 0.0 5.83 10.5 81.1 19.0 -3,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000040938 Slc16a11 ENSMUST00000136328 ENSMUSP00000115212 TRANSLATION protein_coding - - 5 399.0 0.0 4.5 0.7 35.7 16.0 -3,-6 0.0263 3 5.982 MINOR ENSMUSG00000040938 Slc16a11 ENSMUST00000126296 ENSMUSP00000118381 TRANSLATION protein_coding stop - 5 198.0 0.0 3.83 0.0 67.9 12.0 -3,-5 0.0038 - -2.0 MINOR ENSMUSG00000054986 Sec14l3 ENSMUST00000123208 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054986 Sec14l3 ENSMUST00000126396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054986 Sec14l3 ENSMUST00000129330 - NO_TRANSLATION retained_intron ENSMUSG00000054986 Sec14l3 ENSMUST00000125898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054986 Sec14l3 ENSMUST00000068322 ENSMUSP00000065084 TRANSLATION protein_coding - CCDS24375.1 1 401.0 0.0 10.0 11.4 129.5 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000020462 Cfap36 ENSMUST00000144627 - NO_TRANSLATION retained_intron ENSMUSG00000020462 Cfap36 ENSMUST00000020754 ENSMUSP00000020754 TRANSLATION protein_coding - CCDS24493.1 1 343.0 0.0 5.25 7.9 136.9 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000020462 Cfap36 ENSMUST00000141862 - NO_TRANSLATION retained_intron ENSMUSG00000020462 Cfap36 ENSMUST00000134599 ENSMUSP00000118938 TRANSLATION protein_coding stop - 5 137.0 0.0 3.4 0.0 97.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020462 Cfap36 ENSMUST00000127940 - NO_TRANSLATION retained_intron ENSMUSG00000025138 Sirt7 ENSMUST00000146809 ENSMUSP00000120405 TRANSLATION protein_coding start - 5 195.0 4.0 3.08 0.0 35.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025138 Sirt7 ENSMUST00000134255 - NO_TRANSLATION retained_intron ENSMUSG00000025138 Sirt7 ENSMUST00000133625 - NO_TRANSLATION retained_intron ENSMUSG00000025138 Sirt7 ENSMUST00000152331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025138 Sirt7 ENSMUST00000153532 - NO_TRANSLATION retained_intron ENSMUSG00000025138 Sirt7 ENSMUST00000080202 ENSMUSP00000079093 TRANSLATION protein_coding - CCDS49006.1 1 402.0 4.0 9.13 9.3 72.5 0.0 -4,-1 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000025138 Sirt7 ENSMUST00000127882 - NO_TRANSLATION retained_intron ENSMUSG00000025138 Sirt7 ENSMUST00000153018 - NO_TRANSLATION retained_intron ENSMUSG00000025138 Sirt7 ENSMUST00000106183 ENSMUSP00000101789 TRANSLATION protein_coding - - 3 121.0 0.0 3.165 0.0 0.0 0.0 -4,-1 0.0 - 0.0 MINOR ENSMUSG00000025138 Sirt7 ENSMUST00000154714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025138 Sirt7 ENSMUST00000130743 - NO_TRANSLATION retained_intron ENSMUSG00000018541 Cwc25 ENSMUST00000152395 ENSMUSP00000122738 TRANSLATION protein_coding start - 2 132.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000018541 Cwc25 ENSMUST00000018685 ENSMUSP00000018685 TRANSLATION protein_coding - CCDS25330.1 1 416.0 0.0 1.33 5.9 130.9 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000018541 Cwc25 ENSMUST00000107579 ENSMUSP00000103205 TRANSLATION protein_coding - - 1 206.0 0.0 1.33 0.0 113.2 0.0 -4,-5 0.0168 3 10.938 MINOR ENSMUSG00000018541 Cwc25 ENSMUST00000124356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057534 Elobl ENSMUST00000121228 ENSMUSP00000113104 TRANSLATION protein_coding - - 2 161.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.6784 - 6.0 PRINCIPAL:1 ENSMUSG00000057534 Elobl ENSMUST00000061938 ENSMUSP00000103534 TRANSLATION protein_coding - - 1 161.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.6784 - 6.0 PRINCIPAL:1 ENSMUSG00000057534 Elobl ENSMUST00000082339 ENSMUSP00000080951 TRANSLATION protein_coding start/stop - - 100.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0099 - -2.0 MINOR ENSMUSG00000001508 Sgca ENSMUST00000103162 ENSMUSP00000099451 TRANSLATION protein_coding - CCDS25266.1 5 387.0 0.0 0.0 7.1 192.1 2.0 1,-2 1.0 13 8.0 PRINCIPAL:1 ENSMUSG00000001508 Sgca ENSMUST00000139855 ENSMUSP00000117637 TRANSLATION protein_coding start - 5 140.0 0.0 0.0 0.0 48.7 2.0 -4,-6 0.0016 3 -2.0 MINOR ENSMUSG00000001508 Sgca ENSMUST00000166320 ENSMUSP00000130617 TRANSLATION protein_coding - CCDS25266.1 1 387.0 0.0 0.0 7.1 192.1 2.0 1,-2 1.0 13 8.0 PRINCIPAL:1 ENSMUSG00000001508 Sgca ENSMUST00000152042 ENSMUSP00000118455 TRANSLATION protein_coding stop - 2 100.0 0.0 0.0 0.0 50.3 0.0 1,-2 0.0036 3 -2.0 MINOR ENSMUSG00000001508 Sgca ENSMUST00000100551 ENSMUSP00000098118 TRANSLATION protein_coding - CCDS25266.1 1 387.0 0.0 0.0 7.1 192.1 2.0 1,-2 1.0 13 8.0 PRINCIPAL:1 ENSMUSG00000025169 Ogfod3 ENSMUST00000026169 ENSMUSP00000026169 TRANSLATION protein_coding - CCDS25770.1 1 315.0 3.0 6.3 11.9 38.7 0.0 -4,0 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000018583 G3bp1 ENSMUST00000018727 ENSMUSP00000018727 TRANSLATION protein_coding - CCDS24714.1 1 465.0 0.0 4.916 10.3 162.9 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000018583 G3bp1 ENSMUST00000151790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020525 Ppm1d ENSMUST00000020835 ENSMUSP00000020835 TRANSLATION protein_coding - CCDS25194.1 1 598.0 13.0 1.546 2.7 291.3 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000020525 Ppm1d ENSMUST00000127717 ENSMUSP00000115606 TRANSLATION protein_coding stop - 3 169.0 6.0 1.278 0.0 176.3 0.0 -4,-7 0.0003 2 -2.0 MINOR ENSMUSG00000093920 Or4d2 ENSMUST00000217095 ENSMUSP00000149255 TRANSLATION protein_coding - CCDS25222.1 5 311.0 0.0 1.0 12.5 139.1 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093920 Or4d2 ENSMUST00000215150 ENSMUSP00000149765 TRANSLATION protein_coding - CCDS25222.1 5 311.0 0.0 1.0 12.5 139.1 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093920 Or4d2 ENSMUST00000081417 ENSMUSP00000080146 TRANSLATION protein_coding - CCDS25222.1 - 311.0 0.0 1.0 12.5 139.1 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025386 Pde6g ENSMUST00000026452 ENSMUSP00000026452 TRANSLATION protein_coding - CCDS36389.1 1 87.0 0.0 2.25 34.9 159.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025386 Pde6g ENSMUST00000141795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025386 Pde6g ENSMUST00000155421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078650 G6pc ENSMUST00000019469 ENSMUSP00000019469 TRANSLATION protein_coding - CCDS25466.1 1 357.0 3.0 5.0 32.7 63.6 0.0 -4,-6 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000048070 Pirt ENSMUST00000123434 ENSMUSP00000128117 TRANSLATION protein_coding - CCDS24849.1 1 135.0 0.0 0.6 11.4 213.2 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018661 Cog1 ENSMUST00000134418 ENSMUSP00000123001 TRANSLATION protein_coding start - 5 117.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000018661 Cog1 ENSMUST00000152653 ENSMUSP00000117223 TRANSLATION nonsense_mediated_decay start - 5 81.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018661 Cog1 ENSMUST00000142069 ENSMUSP00000119202 TRANSLATION protein_coding start - 2 204.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 6 -2.0 MINOR ENSMUSG00000018661 Cog1 ENSMUST00000137878 ENSMUSP00000119050 TRANSLATION protein_coding start - 2 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000018661 Cog1 ENSMUST00000063776 ENSMUSP00000068394 TRANSLATION protein_coding - - 1 396.0 0.0 0.0 0.0 54.8 0.0 -4,-6 0.0367 9 6.0 MINOR ENSMUSG00000018661 Cog1 ENSMUST00000123085 - NO_TRANSLATION retained_intron ENSMUSG00000018661 Cog1 ENSMUST00000148736 ENSMUSP00000115773 TRANSLATION protein_coding start - 5 217.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0007 7 -2.0 MINOR ENSMUSG00000018661 Cog1 ENSMUST00000018805 ENSMUSP00000018805 TRANSLATION protein_coding - CCDS25599.1 1 980.0 0.0 0.0 4.3 54.8 0.0 -4,-6 1.0 23 8.0 PRINCIPAL:1 ENSMUSG00000020542 Myocd ENSMUST00000151483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020542 Myocd ENSMUST00000101042 ENSMUSP00000098603 TRANSLATION protein_coding - - 1 855.0 0.0 0.2 0.0 41.1 0.0 -4,-5 0.018 2 1.0 MINOR ENSMUSG00000020542 Myocd ENSMUST00000108695 ENSMUSP00000104335 TRANSLATION protein_coding - CCDS48819.1 1 983.0 0.0 3.2 0.1 68.6 0.0 -4,0 0.5142 2 8.0 ALTERNATIVE:2 ENSMUSG00000020542 Myocd ENSMUST00000102635 ENSMUSP00000099695 TRANSLATION protein_coding - CCDS24843.1 1 935.0 0.0 3.2 0.1 68.6 0.0 -4,0 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000020542 Myocd ENSMUST00000150823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020542 Myocd ENSMUST00000144399 ENSMUSP00000115572 TRANSLATION protein_coding start/stop - 3 207.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.001 - -2.0 MINOR ENSMUSG00000044170 Or2y14 ENSMUST00000060434 ENSMUSP00000051954 TRANSLATION protein_coding - CCDS24613.1 - 318.0 0.0 1.0 0.0 161.9 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044170 Or2y14 ENSMUST00000213776 ENSMUSP00000149183 TRANSLATION protein_coding - CCDS24613.1 5 318.0 0.0 1.0 0.0 161.9 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025165 Sectm1a ENSMUST00000149917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025165 Sectm1a ENSMUST00000106120 ENSMUSP00000101726 TRANSLATION protein_coding - - 5 174.0 0.0 1.0 0.0 0.0 1.0 3,-2 0.107 2 4.614 MINOR ENSMUSG00000025165 Sectm1a ENSMUST00000100126 ENSMUSP00000097702 TRANSLATION protein_coding - - 1 65.0 0.0 0.3 0.0 0.0 0.0 3,-2 0.0843 - 1.386 MINOR ENSMUSG00000025165 Sectm1a ENSMUST00000106119 ENSMUSP00000101725 TRANSLATION protein_coding - - 1 89.0 0.0 0.3 0.0 0.0 1.0 3,-2 0.0983 - 1.386 MINOR ENSMUSG00000025165 Sectm1a ENSMUST00000026162 ENSMUSP00000026162 TRANSLATION protein_coding - CCDS25766.1 1 192.0 0.0 1.3 0.0 0.0 1.0 3,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000054404 Slfn5 ENSMUST00000150687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054404 Slfn5 ENSMUST00000108158 ENSMUSP00000103793 TRANSLATION protein_coding stop - 5 378.0 0.0 0.5 0.0 41.9 0.0 -4,-5 0.1074 10 -2.0 MINOR ENSMUSG00000054404 Slfn5 ENSMUST00000108157 ENSMUSP00000103792 TRANSLATION protein_coding - CCDS25153.1 1 884.0 12.0 0.5 0.4 39.8 0.0 -4,-5 1.0 22 17.7 PRINCIPAL:1 ENSMUSG00000054404 Slfn5 ENSMUST00000067443 ENSMUSP00000064819 TRANSLATION protein_coding - CCDS25153.1 1 884.0 12.0 0.5 0.4 39.8 0.0 -4,-5 1.0 22 17.7 PRINCIPAL:1 ENSMUSG00000020776 Fbf1 ENSMUST00000143038 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020776 Fbf1 ENSMUST00000124828 ENSMUSP00000114558 TRANSLATION protein_coding stop - 1 227.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0335 2 -2.0 MINOR ENSMUSG00000020776 Fbf1 ENSMUST00000148350 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020776 Fbf1 ENSMUST00000136318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020776 Fbf1 ENSMUST00000103031 ENSMUSP00000099320 TRANSLATION protein_coding - CCDS25659.1 5 1173.0 0.0 1.4 0.0 0.0 0.0 -4,-5 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000020776 Fbf1 ENSMUST00000131521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020776 Fbf1 ENSMUST00000106435 ENSMUSP00000102043 TRANSLATION protein_coding - CCDS25659.1 1 1173.0 0.0 1.4 0.0 0.0 0.0 -4,-5 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000020776 Fbf1 ENSMUST00000150703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020776 Fbf1 ENSMUST00000125980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020776 Fbf1 ENSMUST00000136073 - NO_TRANSLATION retained_intron ENSMUSG00000020776 Fbf1 ENSMUST00000126861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020776 Fbf1 ENSMUST00000139020 ENSMUSP00000114893 TRANSLATION protein_coding stop - 5 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0398 - -2.0 MINOR ENSMUSG00000061462 Obscn ENSMUST00000238245 - NO_TRANSLATION retained_intron ENSMUSG00000061462 Obscn ENSMUST00000133040 ENSMUSP00000122181 TRANSLATION protein_coding start/stop - 5 849.0 0.0 7.06 0.0 304.7 0.0 -4,-6 0.0062 23 -2.0 MINOR ENSMUSG00000061462 Obscn ENSMUST00000238202 ENSMUSP00000158662 TRANSLATION protein_coding start/stop - - 296.0 0.0 2.85 0.0 56.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000061462 Obscn ENSMUST00000052872 ENSMUSP00000049737 TRANSLATION protein_coding - CCDS56774.1 5 7496.0 0.0 44.014 0.0 2673.1 0.0 -4,-2 0.4598 137 0.0 MINOR ENSMUSG00000061462 Obscn ENSMUST00000132238 ENSMUSP00000116487 TRANSLATION nonsense_mediated_decay start - 5 221.0 0.0 0.65 0.0 39.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000061462 Obscn ENSMUST00000238536 ENSMUSP00000158795 TRANSLATION protein_coding - - - 8886.0 22.0 53.094 0.0 3145.0 0.0 -4,-2 1.0 148 18.0 PRINCIPAL:1 ENSMUSG00000061462 Obscn ENSMUST00000219084 ENSMUSP00000151217 TRANSLATION protein_coding - - 5 6661.0 0.0 38.174 0.0 2250.4 0.0 -4,-2 0.224 133 0.0 MINOR ENSMUSG00000061462 Obscn ENSMUST00000138587 ENSMUSP00000121092 TRANSLATION protein_coding start - 5 923.0 20.0 3.75 0.0 198.9 0.0 -4,-5 0.0039 3 -2.0 MINOR ENSMUSG00000061462 Obscn ENSMUST00000020732 ENSMUSP00000020732 TRANSLATION protein_coding - - 5 7176.0 0.0 44.014 0.0 2673.2 0.0 -4,-2 0.3389 131 0.0 MINOR ENSMUSG00000061462 Obscn ENSMUST00000047441 ENSMUSP00000038264 TRANSLATION protein_coding - CCDS56775.1 5 8032.0 22.0 47.774 0.0 2829.5 0.0 -4,-2 0.4218 142 6.0 MINOR ENSMUSG00000069855 Slc47a2 ENSMUST00000134423 ENSMUSP00000120907 TRANSLATION protein_coding stop - 5 477.0 0.0 7.475 0.0 0.0 13.0 -4,-6 0.0939 - -2.0 MINOR ENSMUSG00000069855 Slc47a2 ENSMUST00000093029 ENSMUSP00000090710 TRANSLATION protein_coding - CCDS24810.1 1 573.0 0.0 7.575 0.4 0.0 13.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069855 Slc47a2 ENSMUST00000147450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047904 Sstr2 ENSMUST00000067591 ENSMUSP00000068578 TRANSLATION protein_coding - CCDS25598.1 2 346.0 0.0 1.1 0.3 214.3 7.0 -4,-5 0.3455 1 12.0 MINOR ENSMUSG00000047904 Sstr2 ENSMUST00000146390 ENSMUSP00000138101 TRANSLATION protein_coding - CCDS59571.1 5 369.0 0.0 1.0 22.7 214.3 7.0 -4,-5 1.0 2 15.454 PRINCIPAL:1 ENSMUSG00000047904 Sstr2 ENSMUST00000106630 ENSMUSP00000102241 TRANSLATION protein_coding - CCDS25598.1 1 346.0 0.0 1.1 0.3 214.3 7.0 -4,-5 0.3455 1 12.0 MINOR ENSMUSG00000107711 Or2ak7 ENSMUST00000204718 ENSMUSP00000145531 TRANSLATION protein_coding - CCDS24739.1 - 306.0 0.0 1.0 3.7 151.8 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000107711 Or2ak7 ENSMUST00000214662 ENSMUSP00000150051 TRANSLATION protein_coding - CCDS24739.1 5 306.0 0.0 1.0 3.7 151.8 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000018411 Mapt ENSMUST00000132245 ENSMUSP00000119145 TRANSLATION protein_coding stop - 3 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018411 Mapt ENSMUST00000146353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018411 Mapt ENSMUST00000138384 - NO_TRANSLATION retained_intron ENSMUSG00000018411 Mapt ENSMUST00000132977 ENSMUSP00000123260 TRANSLATION protein_coding stop - 2 123.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018411 Mapt ENSMUST00000126820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018411 Mapt ENSMUST00000145227 ENSMUSP00000114716 TRANSLATION protein_coding stop - 3 154.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000018411 Mapt ENSMUST00000144836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018411 Mapt ENSMUST00000106989 ENSMUSP00000102602 TRANSLATION protein_coding - - 5 749.0 0.0 3.55 0.4 216.4 0.0 -4,-5 0.2283 24 8.0 MINOR ENSMUSG00000018411 Mapt ENSMUST00000100347 ENSMUSP00000097919 TRANSLATION protein_coding - CCDS25527.1 1 430.0 0.0 3.55 5.7 216.4 0.0 -4,-5 1.0 19 10.0 PRINCIPAL:2 ENSMUSG00000018411 Mapt ENSMUST00000106992 ENSMUSP00000102605 TRANSLATION protein_coding - CCDS25528.1 1 372.0 0.0 3.55 3.9 216.4 0.0 -4,-5 0.7099 18 9.234 ALTERNATIVE:2 ENSMUSG00000018411 Mapt ENSMUST00000106993 ENSMUSP00000102606 TRANSLATION protein_coding - - 5 390.0 0.0 3.55 1.2 216.4 0.0 -4,-5 0.2441 16 8.086 MINOR ENSMUSG00000018411 Mapt ENSMUST00000106988 ENSMUSP00000102601 TRANSLATION protein_coding - - 5 733.0 0.0 3.55 0.0 216.4 0.0 -4,-5 0.0585 23 8.0 MINOR ENSMUSG00000020428 Gabra6 ENSMUST00000155218 ENSMUSP00000126114 TRANSLATION protein_coding - CCDS48769.1 1 453.0 0.0 6.63 3.8 284.0 4.0 4,-1 1.0 3 9.0 PRINCIPAL:2 ENSMUSG00000020428 Gabra6 ENSMUST00000109286 ENSMUSP00000104909 TRANSLATION protein_coding - - 5 452.0 0.0 6.63 0.0 284.0 4.0 -4,-5 0.2484 3 8.0 ALTERNATIVE:2 ENSMUSG00000020428 Gabra6 ENSMUST00000020703 ENSMUSP00000020703 TRANSLATION protein_coding - CCDS24554.1 1 443.0 0.0 6.3 2.4 252.6 4.0 4,-1 0.5397 3 6.84 MINOR ENSMUSG00000040548 Tex2 ENSMUST00000042780 ENSMUSP00000041985 TRANSLATION protein_coding - CCDS25557.1 1 1128.0 0.0 0.0 11.0 0.0 2.0 -4,-7 1.0 21 3.0 PRINCIPAL:1 ENSMUSG00000040548 Tex2 ENSMUST00000103070 ENSMUSP00000099359 TRANSLATION protein_coding - - 1 844.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0707 17 0.0 MINOR ENSMUSG00000040548 Tex2 ENSMUST00000207249 ENSMUSP00000146465 TRANSLATION protein_coding start - 1 629.0 0.0 0.0 0.0 0.0 0.0 1,-4 0.0761 11 -2.0 MINOR ENSMUSG00000040548 Tex2 ENSMUST00000153870 ENSMUSP00000119568 TRANSLATION protein_coding stop - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0254 - -2.0 MINOR ENSMUSG00000040548 Tex2 ENSMUST00000128933 ENSMUSP00000120781 TRANSLATION protein_coding stop - 2 168.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0169 1 -2.0 MINOR ENSMUSG00000020397 Med7 ENSMUST00000109231 ENSMUSP00000104854 TRANSLATION protein_coding stop - 3 173.0 0.0 4.25 0.0 153.8 0.0 -4,-5 0.0149 1 -2.0 MINOR ENSMUSG00000020397 Med7 ENSMUST00000128940 ENSMUSP00000116997 TRANSLATION protein_coding stop - 1 157.0 0.0 3.75 0.0 149.7 0.0 -4,-5 0.0051 1 -2.0 MINOR ENSMUSG00000020397 Med7 ENSMUST00000109232 ENSMUSP00000104855 TRANSLATION protein_coding - CCDS36134.1 1 233.0 0.0 4.25 24.9 153.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000020397 Med7 ENSMUST00000020665 ENSMUSP00000020665 TRANSLATION protein_coding - CCDS36134.1 1 233.0 0.0 4.25 24.9 153.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000020397 Med7 ENSMUST00000140027 ENSMUSP00000120077 TRANSLATION protein_coding stop - 3 61.0 0.0 1.0 0.0 28.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020397 Med7 ENSMUST00000133635 ENSMUSP00000120617 TRANSLATION protein_coding stop - 1 133.0 0.0 3.0 0.0 128.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020397 Med7 ENSMUST00000170928 ENSMUSP00000131852 TRANSLATION protein_coding - CCDS36134.1 1 233.0 0.0 4.25 24.9 153.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000020397 Med7 ENSMUST00000156073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020397 Med7 ENSMUST00000152119 ENSMUSP00000122182 TRANSLATION protein_coding stop - 2 93.0 0.0 2.0 0.0 66.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000050201 Otop2 ENSMUST00000055490 ENSMUSP00000062109 TRANSLATION protein_coding - CCDS25628.1 1 563.0 0.0 2.35 8.1 183.6 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050201 Otop2 ENSMUST00000139466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050201 Otop2 ENSMUST00000131050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050201 Otop2 ENSMUST00000106544 ENSMUSP00000102154 TRANSLATION protein_coding - CCDS25628.1 1 563.0 0.0 2.35 8.1 183.6 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035992 Fnip1 ENSMUST00000143650 ENSMUSP00000121399 TRANSLATION protein_coding stop - 1 631.0 0.0 2.01 0.0 390.9 0.0 -4,-5 0.0331 7 -2.0 MINOR ENSMUSG00000035992 Fnip1 ENSMUST00000046835 ENSMUSP00000049026 TRANSLATION protein_coding - CCDS24698.1 1 1165.0 0.0 2.01 9.2 615.9 0.0 -4,-1 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000020766 Galk1 ENSMUST00000021114 ENSMUSP00000021114 TRANSLATION protein_coding - CCDS25654.1 1 392.0 16.0 7.75 12.5 170.9 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000094488 Or1e33 ENSMUST00000213365 ENSMUSP00000150031 TRANSLATION protein_coding - CCDS25018.1 5 312.0 0.0 1.0 10.5 191.0 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094488 Or1e33 ENSMUST00000102523 ENSMUSP00000099582 TRANSLATION protein_coding - CCDS25018.1 - 312.0 0.0 1.0 10.5 191.0 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056158 Car10 ENSMUST00000042943 ENSMUSP00000035585 TRANSLATION protein_coding - CCDS25244.1 1 328.0 0.0 7.25 35.5 225.8 0.0 -1,-4 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000056158 Car10 ENSMUST00000092780 - NO_TRANSLATION retained_intron ENSMUSG00000056158 Car10 ENSMUST00000107858 ENSMUSP00000103490 TRANSLATION protein_coding - - 1 304.0 0.0 6.5 0.0 193.6 0.0 -1,-4 0.0018 6 8.568 MINOR ENSMUSG00000056158 Car10 ENSMUST00000149611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056158 Car10 ENSMUST00000107859 ENSMUSP00000103491 TRANSLATION protein_coding - - 1 103.0 0.0 1.75 0.0 27.9 0.0 -1,-4 0.0 2 0.0 MINOR ENSMUSG00000056158 Car10 ENSMUST00000107863 ENSMUSP00000103495 TRANSLATION protein_coding - CCDS25244.1 1 328.0 0.0 7.25 35.5 225.8 0.0 -1,-4 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000056158 Car10 ENSMUST00000107861 ENSMUSP00000103493 TRANSLATION protein_coding - - 1 169.0 0.0 3.5 0.0 84.0 0.0 -1,-4 0.0 3 0.0 MINOR ENSMUSG00000020918 Kat2a ENSMUST00000153526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020918 Kat2a ENSMUST00000103118 ENSMUSP00000099407 TRANSLATION protein_coding - CCDS25433.1 1 830.0 26.0 12.4 0.7 504.1 0.0 -4,-7 0.9946 3 14.0 ALTERNATIVE:2 ENSMUSG00000020918 Kat2a ENSMUST00000126299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020918 Kat2a ENSMUST00000006973 ENSMUSP00000006973 TRANSLATION protein_coding - CCDS25432.1 1 829.0 26.0 12.4 0.7 504.1 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:4 ENSMUSG00000078249 Hmga1b ENSMUST00000105046 ENSMUSP00000100667 TRANSLATION protein_coding - CCDS49010.1 - 107.0 0.0 0.4 9.8 0.0 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000078249 Hmga1b ENSMUST00000178955 ENSMUSP00000137252 TRANSLATION protein_coding - - - 39.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0198 - 0.0 MINOR ENSMUSG00000051748 Wfdc21 ENSMUST00000070832 ENSMUSP00000064479 TRANSLATION protein_coding - CCDS36258.1 1 63.0 0.0 1.0 1.1 22.1 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000040850 Psme4 ENSMUST00000154757 ENSMUSP00000119133 TRANSLATION protein_coding start/stop - 3 219.0 0.0 3.25 0.0 0.0 0.0 -2,0 0.0004 4 -2.0 MINOR ENSMUSG00000040850 Psme4 ENSMUST00000150219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040850 Psme4 ENSMUST00000041231 ENSMUSP00000045460 TRANSLATION protein_coding - CCDS36124.1 1 1843.0 0.0 41.41 5.3 507.5 0.0 -4,-5 1.0 34 14.0 PRINCIPAL:1 ENSMUSG00000040850 Psme4 ENSMUST00000133430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040850 Psme4 ENSMUST00000142217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040850 Psme4 ENSMUST00000155719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040850 Psme4 ENSMUST00000129824 ENSMUSP00000114537 TRANSLATION protein_coding start - 3 107.0 0.0 1.41 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000020843 Timm22 ENSMUST00000164102 ENSMUSP00000132836 TRANSLATION nonsense_mediated_decay - - 3 90.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020843 Timm22 ENSMUST00000152183 ENSMUSP00000123281 TRANSLATION protein_coding stop - 2 116.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020843 Timm22 ENSMUST00000021203 ENSMUSP00000021203 TRANSLATION protein_coding - CCDS25065.1 1 194.0 0.0 2.95 12.1 101.1 1.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020843 Timm22 ENSMUST00000120699 ENSMUSP00000113238 TRANSLATION protein_coding - CCDS70245.1 3 141.0 0.0 1.9995 0.0 95.8 1.0 0,-3 0.06 1 9.75 MINOR ENSMUSG00000112920 Spata22 ENSMUST00000092926 ENSMUSP00000090602 TRANSLATION protein_coding - CCDS36219.1 1 358.0 0.0 3.0 11.0 0.0 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000020932 Gfap ENSMUST00000077902 ENSMUSP00000077061 TRANSLATION protein_coding - CCDS48950.1 1 428.0 0.0 5.15 3.6 393.1 0.0 -4,0 0.5917 25 12.897 MINOR ENSMUSG00000020932 Gfap ENSMUST00000067444 ENSMUSP00000064691 TRANSLATION protein_coding - CCDS25507.1 1 430.0 0.0 5.15 9.7 393.1 0.0 -4,0 1.0 24 15.0 PRINCIPAL:1 ENSMUSG00000020932 Gfap ENSMUST00000127909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048763 Hoxb3 ENSMUST00000055334 ENSMUSP00000053426 TRANSLATION protein_coding - CCDS25299.1 1 433.0 0.0 0.4 11.1 192.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048763 Hoxb3 ENSMUST00000123091 ENSMUSP00000134435 TRANSLATION protein_coding stop - 2 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048763 Hoxb3 ENSMUST00000143462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048763 Hoxb3 ENSMUST00000093944 ENSMUSP00000091476 TRANSLATION protein_coding - CCDS25299.1 5 433.0 0.0 0.4 11.1 192.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070378 Or1a1 ENSMUST00000206247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070378 Or1a1 ENSMUST00000076675 ENSMUSP00000075971 TRANSLATION protein_coding - CCDS25027.1 - 313.0 0.0 1.0 9.6 197.9 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070378 Or1a1 ENSMUST00000206114 ENSMUSP00000145741 TRANSLATION protein_coding - CCDS25027.1 3 313.0 0.0 1.0 9.6 197.9 4.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020914 Top2a ENSMUST00000129777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020914 Top2a ENSMUST00000139460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020914 Top2a ENSMUST00000144318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020914 Top2a ENSMUST00000139730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020914 Top2a ENSMUST00000068031 ENSMUSP00000068896 TRANSLATION protein_coding - CCDS25370.1 1 1528.0 22.0 24.6 5.3 867.3 0.0 -4,-5 1.0 27 20.0 PRINCIPAL:1 ENSMUSG00000020914 Top2a ENSMUST00000151997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020914 Top2a ENSMUST00000154332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025575 Cant1 ENSMUST00000106287 ENSMUSP00000101894 TRANSLATION protein_coding - CCDS25702.1 1 403.0 6.0 3.0 21.5 439.8 1.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025575 Cant1 ENSMUST00000106288 ENSMUSP00000101895 TRANSLATION protein_coding - CCDS25702.1 5 403.0 6.0 3.0 21.5 439.8 1.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025575 Cant1 ENSMUST00000106289 ENSMUSP00000101896 TRANSLATION protein_coding - CCDS59572.1 1 440.0 6.0 2.0 0.0 420.2 1.0 -4,-7 0.0367 13 14.826 MINOR ENSMUSG00000025575 Cant1 ENSMUST00000164927 ENSMUSP00000126919 TRANSLATION protein_coding - CCDS25702.1 1 403.0 6.0 3.0 21.5 439.8 1.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025575 Cant1 ENSMUST00000017620 ENSMUSP00000017620 TRANSLATION protein_coding - CCDS25702.1 1 403.0 6.0 3.0 21.5 439.8 1.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025575 Cant1 ENSMUST00000092378 ENSMUSP00000090032 TRANSLATION protein_coding - CCDS25702.1 1 403.0 6.0 3.0 21.5 439.8 1.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000020381 Mrnip ENSMUST00000123164 ENSMUSP00000115263 TRANSLATION nonsense_mediated_decay start - 3 103.0 4.0 2.25 0.0 98.8 0.0 -4,-2 0.0079 1 -2.0 MINOR ENSMUSG00000020381 Mrnip ENSMUST00000143480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020381 Mrnip ENSMUST00000020647 ENSMUSP00000020647 TRANSLATION protein_coding - CCDS48784.1 1 335.0 4.0 2.865 0.4 104.5 0.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000044034 Npb ENSMUST00000106194 ENSMUSP00000101800 TRANSLATION protein_coding - CCDS83944.1 2 115.0 0.0 1.5 0.0 139.1 0.0 4,-1 0.3445 - 7.334 ALTERNATIVE:2 ENSMUSG00000044034 Npb ENSMUST00000061309 ENSMUSP00000050092 TRANSLATION protein_coding - CCDS83945.1 3 107.0 0.0 1.0 0.1 101.7 0.0 4,-1 0.0482 - 4.002 MINOR ENSMUSG00000044034 Npb ENSMUST00000106195 ENSMUSP00000101801 TRANSLATION protein_coding - CCDS25746.1 1 119.0 0.0 1.5 0.1 150.3 0.0 4,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000040950 Mgl2 ENSMUST00000132645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040950 Mgl2 ENSMUST00000165951 ENSMUSP00000131344 TRANSLATION protein_coding - - 1 381.0 13.0 6.85 0.0 181.7 1.0 -4,-6 0.0345 10 11.598 MINOR ENSMUSG00000040950 Mgl2 ENSMUST00000147502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040950 Mgl2 ENSMUST00000041550 ENSMUSP00000048568 TRANSLATION protein_coding - CCDS24935.1 1 332.0 13.0 7.05 0.0 191.2 1.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000040950 Mgl2 ENSMUST00000108584 ENSMUSP00000104225 TRANSLATION protein_coding start - 1 374.0 13.0 7.05 0.0 181.8 1.0 -4,-5 0.0494 9 -2.0 MINOR ENSMUSG00000034274 Thoc5 ENSMUST00000101615 ENSMUSP00000099137 TRANSLATION protein_coding - - 5 635.0 0.0 9.855 0.0 434.0 0.0 -4,-5 0.0237 10 11.34 MINOR ENSMUSG00000034274 Thoc5 ENSMUST00000142543 ENSMUSP00000118940 TRANSLATION protein_coding stop - 5 300.0 0.0 2.775 0.0 316.8 0.0 -4,-5 0.0011 4 -2.0 MINOR ENSMUSG00000034274 Thoc5 ENSMUST00000144371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034274 Thoc5 ENSMUST00000155872 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034274 Thoc5 ENSMUST00000148117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034274 Thoc5 ENSMUST00000038237 ENSMUSP00000045580 TRANSLATION protein_coding - CCDS24393.1 1 683.0 0.0 10.185 33.8 434.0 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000020878 Lrrc46 ENSMUST00000021251 ENSMUSP00000021251 TRANSLATION protein_coding - CCDS25311.1 1 323.0 0.0 4.17 2.3 0.0 0.0 -4,-5 1.0 6 7.0 PRINCIPAL:1 ENSMUSG00000001552 Jup ENSMUST00000149798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001552 Jup ENSMUST00000151476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001552 Jup ENSMUST00000124659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001552 Jup ENSMUST00000123903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001552 Jup ENSMUST00000107403 ENSMUSP00000103026 TRANSLATION protein_coding - CCDS25420.1 5 745.0 0.0 8.6 12.5 92.6 0.0 -4,-5 1.0 25 15.0 PRINCIPAL:1 ENSMUSG00000001552 Jup ENSMUST00000128268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001552 Jup ENSMUST00000152774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001552 Jup ENSMUST00000001592 ENSMUSP00000001592 TRANSLATION protein_coding - CCDS25420.1 1 745.0 0.0 8.6 12.5 92.6 0.0 -4,-5 1.0 25 15.0 PRINCIPAL:1 ENSMUSG00000001552 Jup ENSMUST00000155746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049470 Aff4 ENSMUST00000153821 ENSMUSP00000120613 TRANSLATION protein_coding stop - 5 122.0 0.0 1.0 0.0 162.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000049470 Aff4 ENSMUST00000139054 - NO_TRANSLATION retained_intron ENSMUSG00000049470 Aff4 ENSMUST00000129019 - NO_TRANSLATION retained_intron ENSMUSG00000049470 Aff4 ENSMUST00000130152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049470 Aff4 ENSMUST00000136470 - NO_TRANSLATION retained_intron ENSMUSG00000049470 Aff4 ENSMUST00000060945 ENSMUSP00000051479 TRANSLATION protein_coding - CCDS24676.1 1 1160.0 0.0 6.765 5.1 1366.2 0.0 -4,-6 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000049470 Aff4 ENSMUST00000154499 - NO_TRANSLATION retained_intron ENSMUSG00000049470 Aff4 ENSMUST00000152616 ENSMUSP00000118866 TRANSLATION protein_coding start/stop - 5 159.0 0.0 0.5 0.0 95.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025163 Cd7 ENSMUST00000163465 - NO_TRANSLATION retained_intron ENSMUSG00000025163 Cd7 ENSMUST00000026159 ENSMUSP00000026159 TRANSLATION protein_coding - CCDS25764.1 1 210.0 0.0 0.48 0.0 35.5 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000014198 Zfp385c ENSMUST00000151589 ENSMUSP00000119259 TRANSLATION protein_coding start/stop - 5 251.0 8.0 0.0 0.0 50.7 0.0 -4,-5 0.0029 - -2.0 MINOR ENSMUSG00000014198 Zfp385c ENSMUST00000153494 ENSMUSP00000115268 TRANSLATION protein_coding stop - 3 115.0 4.0 0.0 0.0 23.9 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000014198 Zfp385c ENSMUST00000103119 ENSMUSP00000099408 TRANSLATION protein_coding - CCDS25430.1 1 429.0 7.0 0.0 1.1 80.7 0.0 -3,-6 1.0 - 12.25 PRINCIPAL:1 ENSMUSG00000014198 Zfp385c ENSMUST00000148560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034175 Rhbdd3 ENSMUST00000134267 ENSMUSP00000118085 TRANSLATION protein_coding stop - 3 49.0 0.0 0.0 0.0 0.0 2.0 -1,-4 0.0005 - -2.0 MINOR ENSMUSG00000034175 Rhbdd3 ENSMUST00000129016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034175 Rhbdd3 ENSMUST00000036320 ENSMUSP00000044703 TRANSLATION protein_coding - CCDS70133.1 1 375.0 0.0 0.3 0.0 48.6 5.0 -1,-4 0.1771 2 8.148 MINOR ENSMUSG00000034175 Rhbdd3 ENSMUST00000101610 ENSMUSP00000099131 TRANSLATION protein_coding - CCDS24397.1 1 385.0 0.0 0.7 7.5 52.3 7.0 -1,-4 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000034175 Rhbdd3 ENSMUST00000146879 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034175 Rhbdd3 ENSMUST00000109878 ENSMUSP00000105504 TRANSLATION protein_coding - CCDS24397.1 1 385.0 0.0 0.7 7.5 52.3 7.0 -1,-4 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000034175 Rhbdd3 ENSMUST00000150632 ENSMUSP00000119972 TRANSLATION protein_coding stop - 3 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034175 Rhbdd3 ENSMUST00000139742 ENSMUSP00000116703 TRANSLATION protein_coding stop - 2 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034175 Rhbdd3 ENSMUST00000137370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034175 Rhbdd3 ENSMUST00000148761 ENSMUSP00000120264 TRANSLATION protein_coding stop - 5 192.0 0.0 0.7 0.0 27.4 7.0 -1,-4 0.0587 1 -2.0 MINOR ENSMUSG00000025135 Anapc11 ENSMUST00000148114 - NO_TRANSLATION retained_intron ENSMUSG00000025135 Anapc11 ENSMUST00000129263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025135 Anapc11 ENSMUST00000026128 ENSMUSP00000026128 TRANSLATION protein_coding - CCDS25745.1 1 84.0 10.0 2.0 33.9 150.3 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000025135 Anapc11 ENSMUST00000093140 ENSMUSP00000097714 TRANSLATION protein_coding - CCDS25745.1 1 84.0 10.0 2.0 33.9 150.3 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000018923 Med11 ENSMUST00000151013 ENSMUSP00000134323 TRANSLATION protein_coding - - 2 127.0 0.0 1.92 1.4 37.9 0.0 -4,-5 0.0267 1 9.638 MINOR ENSMUSG00000018923 Med11 ENSMUST00000019067 ENSMUSP00000019067 TRANSLATION protein_coding - CCDS24947.1 1 117.0 0.0 2.25 14.8 51.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000018923 Med11 ENSMUST00000152348 - NO_TRANSLATION retained_intron ENSMUSG00000043999 Gpr75 ENSMUST00000109430 ENSMUSP00000105057 TRANSLATION protein_coding - CCDS24508.1 1 540.0 0.0 0.0 11.4 63.3 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000032691 Nlrp3 ENSMUST00000149126 ENSMUSP00000114231 TRANSLATION protein_coding stop - 2 173.0 2.0 1.0 0.0 111.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032691 Nlrp3 ENSMUST00000101148 ENSMUSP00000098707 TRANSLATION protein_coding - CCDS24771.1 1 1033.0 9.0 6.95 5.4 379.9 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000032691 Nlrp3 ENSMUST00000079476 ENSMUSP00000078440 TRANSLATION protein_coding - CCDS24771.1 1 1033.0 9.0 6.95 5.4 379.9 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000070335 Krtap9-1 ENSMUST00000093936 ENSMUSP00000091468 TRANSLATION protein_coding - CCDS25399.1 - 186.0 0.0 0.0 0.4 32.2 0.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000020715 Ern1 ENSMUST00000106800 ENSMUSP00000102412 TRANSLATION protein_coding - - 3 118.0 0.0 2.08 0.0 0.0 0.0 3,-2 0.0011 - 0.0 MINOR ENSMUSG00000020715 Ern1 ENSMUST00000131895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020715 Ern1 ENSMUST00000106801 ENSMUSP00000102413 TRANSLATION protein_coding - - 1 408.0 0.0 4.745 0.0 0.0 0.0 3,-2 0.0018 6 0.0 MINOR ENSMUSG00000020715 Ern1 ENSMUST00000001059 ENSMUSP00000001059 TRANSLATION protein_coding - CCDS25556.1 1 977.0 20.0 13.495 0.1 288.2 0.0 3,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000020715 Ern1 ENSMUST00000106799 ENSMUSP00000102411 TRANSLATION protein_coding - - 1 66.0 0.0 1.0 0.0 0.0 0.0 3,-2 0.0011 - 0.0 MINOR ENSMUSG00000020521 Rnft1 ENSMUST00000125675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020521 Rnft1 ENSMUST00000131246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020521 Rnft1 ENSMUST00000020827 ENSMUSP00000020827 TRANSLATION protein_coding - CCDS25200.1 1 395.0 8.0 1.975 12.3 37.2 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000020272 Stk10 ENSMUST00000102821 ENSMUSP00000099885 TRANSLATION protein_coding - CCDS24529.1 1 966.0 19.0 7.0 7.1 460.5 0.0 -4,-1 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000020272 Stk10 ENSMUST00000143397 - NO_TRANSLATION retained_intron ENSMUSG00000034329 Brip1 ENSMUST00000123366 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034329 Brip1 ENSMUST00000044423 ENSMUSP00000043108 TRANSLATION protein_coding - CCDS25197.1 1 1174.0 0.0 2.623 0.0 359.5 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000034329 Brip1 ENSMUST00000149748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035530 Eif1 ENSMUST00000049385 ENSMUSP00000041538 TRANSLATION protein_coding - CCDS25417.1 1 113.0 0.0 3.58 36.2 100.7 0.0 -4,-5 1.0 2 15.982 PRINCIPAL:1 ENSMUSG00000035530 Eif1 ENSMUST00000152521 ENSMUSP00000136642 TRANSLATION protein_coding start - 2 90.0 0.0 2.45 0.0 101.0 0.0 -4,-5 0.0025 - -2.0 MINOR ENSMUSG00000035530 Eif1 ENSMUST00000151513 ENSMUSP00000137558 TRANSLATION protein_coding stop - 3 110.0 0.0 2.0 0.0 67.0 0.0 -4,0 0.0116 - -2.0 MINOR ENSMUSG00000035530 Eif1 ENSMUST00000139846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035530 Eif1 ENSMUST00000132618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038893 Fam117a ENSMUST00000129290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038893 Fam117a ENSMUST00000037502 ENSMUSP00000049162 TRANSLATION protein_coding - CCDS25276.1 1 451.0 0.0 0.0 0.0 377.4 0.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000038893 Fam117a ENSMUST00000129553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038893 Fam117a ENSMUST00000143482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038893 Fam117a ENSMUST00000132357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038893 Fam117a ENSMUST00000155999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025156 Gps1 ENSMUST00000208737 ENSMUSP00000147152 TRANSLATION protein_coding - - 5 486.0 0.0 9.65 22.6 309.3 0.0 -4,-6 0.8376 12 11.7 ALTERNATIVE:1 ENSMUSG00000025156 Gps1 ENSMUST00000132422 - NO_TRANSLATION retained_intron ENSMUSG00000025156 Gps1 ENSMUST00000100134 ENSMUSP00000097711 TRANSLATION protein_coding - CCDS83950.1 2 490.0 0.0 9.8 22.6 309.9 0.0 -4,-6 0.9854 12 12.0 ALTERNATIVE:1 ENSMUSG00000025156 Gps1 ENSMUST00000144519 - NO_TRANSLATION retained_intron ENSMUSG00000025156 Gps1 ENSMUST00000172809 ENSMUSP00000133855 TRANSLATION protein_coding - CCDS25758.2 1 526.0 0.0 9.8 5.8 309.9 0.0 -4,-1 0.505 14 8.888 MINOR ENSMUSG00000025156 Gps1 ENSMUST00000116305 ENSMUSP00000112007 TRANSLATION protein_coding - CCDS49011.1 1 487.0 0.0 9.8 22.6 309.9 0.0 -4,-6 1.0 13 12.0 PRINCIPAL:3 ENSMUSG00000025156 Gps1 ENSMUST00000153678 ENSMUSP00000123512 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000025156 Gps1 ENSMUST00000156723 - NO_TRANSLATION retained_intron ENSMUSG00000040592 Cd79b ENSMUST00000167143 ENSMUSP00000129029 TRANSLATION protein_coding - CCDS48960.1 1 228.0 0.0 2.02 6.6 53.5 2.0 2,-3 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000040592 Cd79b ENSMUST00000044228 ENSMUSP00000048239 TRANSLATION protein_coding - - 1 288.0 0.0 2.02 0.0 52.8 2.0 -4,-7 0.0441 1 11.922 MINOR ENSMUSG00000045065 9930022D16Rik ENSMUST00000055404 ENSMUSP00000062888 TRANSLATION protein_coding - - 1 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000058287 Gm12253 ENSMUST00000108825 ENSMUSP00000104453 TRANSLATION protein_coding - CCDS36164.1 5 229.0 0.0 3.2 0.0 0.0 0.0 0,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000040483 Xaf1 ENSMUST00000142921 - NO_TRANSLATION retained_intron ENSMUSG00000040483 Xaf1 ENSMUST00000140842 ENSMUSP00000121472 TRANSLATION protein_coding - CCDS70236.1 3 178.0 8.0 1.266 0.0 0.0 0.0 -4,-6 0.1168 3 4.302 MINOR ENSMUSG00000040483 Xaf1 ENSMUST00000146233 ENSMUSP00000123011 TRANSLATION protein_coding - CCDS24984.2 5 273.0 20.0 1.766 0.0 0.0 0.0 -4,-6 0.9075 3 12.0 PRINCIPAL:1 ENSMUSG00000040483 Xaf1 ENSMUST00000094041 ENSMUSP00000091583 TRANSLATION nonsense_mediated_decay - - 1 75.0 8.0 0.666 0.0 0.0 0.0 -4,-6 0.0105 1 -2.0 MINOR ENSMUSG00000040483 Xaf1 ENSMUST00000151440 ENSMUSP00000121483 TRANSLATION protein_coding stop - 3 207.0 8.0 0.866 0.0 0.0 0.0 -4,-6 0.0248 2 -2.0 MINOR ENSMUSG00000020689 Itgb3 ENSMUST00000021028 ENSMUSP00000021028 TRANSLATION protein_coding - CCDS25536.1 1 787.0 11.0 13.5 7.7 616.3 0.0 3,-2 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000020689 Itgb3 ENSMUST00000127140 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020182 Ddc ENSMUST00000066237 ENSMUSP00000068525 TRANSLATION protein_coding - CCDS24439.1 5 480.0 13.0 11.66 15.6 570.7 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000020182 Ddc ENSMUST00000136810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020182 Ddc ENSMUST00000122971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020182 Ddc ENSMUST00000134401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020182 Ddc ENSMUST00000134121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020182 Ddc ENSMUST00000178704 ENSMUSP00000136467 TRANSLATION protein_coding - CCDS24439.1 1 480.0 13.0 11.66 15.6 570.7 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000020182 Ddc ENSMUST00000155690 ENSMUSP00000121096 TRANSLATION protein_coding stop - 5 253.0 7.0 5.5 0.0 304.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020182 Ddc ENSMUST00000109659 ENSMUSP00000105286 TRANSLATION protein_coding - CCDS24439.1 1 480.0 13.0 11.66 15.6 570.7 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000020182 Ddc ENSMUST00000146359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020182 Ddc ENSMUST00000145033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017639 Rab11fip4 ENSMUST00000017783 ENSMUSP00000017783 TRANSLATION protein_coding - CCDS25123.1 1 635.0 8.0 1.4 1.0 66.1 0.0 -4,0 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000017639 Rab11fip4 ENSMUST00000155381 ENSMUSP00000114971 TRANSLATION protein_coding stop - 2 137.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020385 Clk4 ENSMUST00000130641 ENSMUSP00000123133 TRANSLATION protein_coding stop - 3 183.0 8.0 1.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000020385 Clk4 ENSMUST00000153414 ENSMUSP00000115894 TRANSLATION nonsense_mediated_decay - - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020385 Clk4 ENSMUST00000133200 - NO_TRANSLATION retained_intron ENSMUSG00000020385 Clk4 ENSMUST00000148053 ENSMUSP00000120822 TRANSLATION nonsense_mediated_decay - - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020385 Clk4 ENSMUST00000148467 - NO_TRANSLATION retained_intron ENSMUSG00000020385 Clk4 ENSMUST00000143468 - NO_TRANSLATION retained_intron ENSMUSG00000020385 Clk4 ENSMUST00000146776 - NO_TRANSLATION retained_intron ENSMUSG00000020385 Clk4 ENSMUST00000126131 ENSMUSP00000118972 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000020385 Clk4 ENSMUST00000140628 - NO_TRANSLATION retained_intron ENSMUSG00000020385 Clk4 ENSMUST00000109113 ENSMUSP00000104741 TRANSLATION protein_coding - CCDS78942.1 1 301.0 13.0 7.5 15.5 159.1 0.0 -4,-6 0.7521 2 11.684 MINOR ENSMUSG00000020385 Clk4 ENSMUST00000109111 ENSMUSP00000104739 TRANSLATION protein_coding - CCDS78942.1 2 301.0 13.0 7.5 15.5 159.1 0.0 -4,-6 0.7521 2 11.684 MINOR ENSMUSG00000020385 Clk4 ENSMUST00000093132 ENSMUSP00000090820 TRANSLATION protein_coding - CCDS24651.1 1 481.0 21.0 9.25 16.5 179.5 0.0 -4,-6 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000020385 Clk4 ENSMUST00000147007 - NO_TRANSLATION retained_intron ENSMUSG00000020385 Clk4 ENSMUST00000136587 - NO_TRANSLATION retained_intron ENSMUSG00000020923 Ubtf ENSMUST00000107119 ENSMUSP00000102736 TRANSLATION protein_coding - CCDS36343.1 1 727.0 0.0 10.95 0.4 333.7 0.0 -4,-5 0.1971 20 9.18 MINOR ENSMUSG00000020923 Ubtf ENSMUST00000174400 - NO_TRANSLATION retained_intron ENSMUSG00000020923 Ubtf ENSMUST00000107117 ENSMUSP00000102734 TRANSLATION protein_coding - CCDS36343.1 5 727.0 0.0 10.95 0.4 333.7 0.0 -4,-5 0.1971 20 9.18 MINOR ENSMUSG00000020923 Ubtf ENSMUST00000006754 ENSMUSP00000006754 TRANSLATION protein_coding - CCDS79056.1 1 752.0 0.0 10.95 0.0 333.7 0.0 -4,-5 0.2843 20 9.18 MINOR ENSMUSG00000020923 Ubtf ENSMUST00000107115 ENSMUSP00000102732 TRANSLATION protein_coding - CCDS36343.1 5 727.0 0.0 10.95 0.4 333.7 0.0 -4,-5 0.1971 20 9.18 MINOR ENSMUSG00000020923 Ubtf ENSMUST00000107123 ENSMUSP00000102740 TRANSLATION protein_coding - CCDS25495.1 5 764.0 0.0 11.35 0.4 367.4 0.0 -4,-5 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000020923 Ubtf ENSMUST00000173870 ENSMUSP00000133611 TRANSLATION protein_coding - CCDS25495.1 5 764.0 0.0 11.35 0.4 367.4 0.0 -4,-5 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000020923 Ubtf ENSMUST00000146896 ENSMUSP00000134665 TRANSLATION protein_coding stop - 5 151.0 0.0 1.75 0.0 68.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000020923 Ubtf ENSMUST00000174726 - NO_TRANSLATION retained_intron ENSMUSG00000020923 Ubtf ENSMUST00000128016 ENSMUSP00000131930 TRANSLATION protein_coding - - 2 169.0 0.0 1.0 0.0 48.0 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000020923 Ubtf ENSMUST00000174302 ENSMUSP00000133844 TRANSLATION protein_coding - CCDS25495.1 5 764.0 0.0 11.35 0.4 367.4 0.0 -4,-5 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000020923 Ubtf ENSMUST00000079589 ENSMUSP00000078539 TRANSLATION protein_coding - CCDS25495.1 5 764.0 0.0 11.35 0.4 367.4 0.0 -4,-5 1.0 20 12.0 PRINCIPAL:1 ENSMUSG00000020923 Ubtf ENSMUST00000178839 ENSMUSP00000136310 TRANSLATION protein_coding - CCDS36343.1 1 727.0 0.0 10.95 0.4 333.7 0.0 -4,-5 0.1971 20 9.18 MINOR ENSMUSG00000044811 Cd300c2 ENSMUST00000092464 ENSMUSP00000090121 TRANSLATION protein_coding - CCDS25616.1 1 228.0 0.0 1.6 0.1 44.9 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044811 Cd300c2 ENSMUST00000249132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044811 Cd300c2 ENSMUST00000141188 ENSMUSP00000124035 TRANSLATION nonsense_mediated_decay - - 1 80.0 0.0 0.0 0.0 0.0 0.0 0,-2 0.0 - -2.0 MINOR ENSMUSG00000038067 Csf3 ENSMUST00000038886 ENSMUSP00000037762 TRANSLATION protein_coding - CCDS25360.1 1 208.0 0.0 3.6 2.7 302.4 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051427 Ccdc157 ENSMUST00000101626 ENSMUSP00000099148 TRANSLATION protein_coding - CCDS24379.1 1 616.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.1737 3 0.0 ALTERNATIVE:2 ENSMUSG00000051427 Ccdc157 ENSMUST00000132712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051427 Ccdc157 ENSMUST00000137060 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051427 Ccdc157 ENSMUST00000133962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051427 Ccdc157 ENSMUST00000093381 ENSMUSP00000091074 TRANSLATION protein_coding - CCDS48743.1 1 718.0 0.0 0.0 3.2 0.0 0.0 -4,-5 1.0 3 1.0 PRINCIPAL:2 ENSMUSG00000051427 Ccdc157 ENSMUST00000139099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018848 Rars ENSMUST00000166122 - NO_TRANSLATION retained_intron ENSMUSG00000018848 Rars ENSMUST00000143205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018848 Rars ENSMUST00000137815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018848 Rars ENSMUST00000165817 - NO_TRANSLATION retained_intron ENSMUSG00000018848 Rars ENSMUST00000018992 ENSMUSP00000018992 TRANSLATION protein_coding - CCDS24544.1 1 660.0 11.0 14.5 22.6 735.3 0.0 -4,-5 1.0 36 22.0 PRINCIPAL:1 ENSMUSG00000052921 Arhgef15 ENSMUST00000151520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052921 Arhgef15 ENSMUST00000065040 ENSMUSP00000067684 TRANSLATION protein_coding - CCDS24873.1 5 849.0 0.0 4.89 0.4 110.8 0.0 -4,-2 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000052921 Arhgef15 ENSMUST00000131686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052921 Arhgef15 ENSMUST00000108671 ENSMUSP00000104311 TRANSLATION protein_coding - CCDS24873.1 5 849.0 0.0 4.89 0.4 110.8 0.0 -4,-2 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000052921 Arhgef15 ENSMUST00000108670 - NO_TRANSLATION retained_intron ENSMUSG00000052921 Arhgef15 ENSMUST00000141747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041329 Atp1b2 ENSMUST00000153198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041329 Atp1b2 ENSMUST00000130394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041329 Atp1b2 ENSMUST00000047889 ENSMUSP00000047353 TRANSLATION protein_coding - CCDS24898.1 1 290.0 0.0 6.5 15.6 370.9 0.0 -4,-7 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000041329 Atp1b2 ENSMUST00000138694 ENSMUSP00000116290 TRANSLATION protein_coding start - 2 136.0 0.0 3.099 0.0 134.1 0.0 -4,-6 0.0001 3 -2.0 MINOR ENSMUSG00000041329 Atp1b2 ENSMUST00000144425 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020682 Mmp28 ENSMUST00000021020 ENSMUSP00000021020 TRANSLATION protein_coding - CCDS25166.1 1 510.0 19.0 2.68 0.7 248.7 0.0 3,-1 0.1641 - 15.882 MINOR ENSMUSG00000020682 Mmp28 ENSMUST00000108137 ENSMUSP00000103772 TRANSLATION protein_coding - CCDS83860.1 1 520.0 19.0 2.878 4.9 277.1 0.0 3,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000020682 Mmp28 ENSMUST00000119346 ENSMUSP00000112566 TRANSLATION protein_coding - - 1 407.0 18.0 2.678 0.0 224.5 0.0 3,-1 0.0051 - 13.764 MINOR ENSMUSG00000020682 Mmp28 ENSMUST00000103209 ENSMUSP00000099498 TRANSLATION protein_coding - CCDS25167.1 1 496.0 19.0 2.48 0.7 248.7 0.0 3,-1 0.0887 - 15.468 MINOR ENSMUSG00000020682 Mmp28 ENSMUST00000138780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001755 Coasy ENSMUST00000107308 ENSMUSP00000102929 TRANSLATION protein_coding - CCDS25446.1 1 563.0 26.0 5.73 4.0 179.9 0.0 3,-4 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000001755 Coasy ENSMUST00000001806 ENSMUSP00000001806 TRANSLATION protein_coding - CCDS25446.1 1 563.0 26.0 5.73 4.0 179.9 0.0 3,-4 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000001755 Coasy ENSMUST00000151056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001755 Coasy ENSMUST00000151686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020936 Nmt1 ENSMUST00000148795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020936 Nmt1 ENSMUST00000021314 ENSMUSP00000021314 TRANSLATION protein_coding - CCDS25511.1 1 496.0 33.0 9.33 16.4 527.7 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000020936 Nmt1 ENSMUST00000135332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010803 Gabra1 ENSMUST00000020707 ENSMUSP00000020707 TRANSLATION protein_coding - CCDS24553.1 1 455.0 0.0 7.16 22.9 282.3 3.0 2,-1 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000010803 Gabra1 ENSMUST00000206105 ENSMUSP00000145949 TRANSLATION protein_coding stop - 5 302.0 0.0 6.16 0.0 230.4 2.0 2,-1 0.0045 4 -2.0 MINOR ENSMUSG00000010803 Gabra1 ENSMUST00000206085 ENSMUSP00000146285 TRANSLATION protein_coding stop - 5 114.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000010803 Gabra1 ENSMUST00000169305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010803 Gabra1 ENSMUST00000205546 ENSMUSP00000146133 TRANSLATION protein_coding - CCDS24553.1 5 455.0 0.0 7.16 22.9 282.3 3.0 2,-1 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000010803 Gabra1 ENSMUST00000153147 ENSMUSP00000129056 TRANSLATION protein_coding stop - 5 91.0 0.0 1.83 0.0 29.9 0.0 2,-1 0.0008 - -2.0 MINOR ENSMUSG00000010803 Gabra1 ENSMUST00000132971 ENSMUSP00000126611 TRANSLATION protein_coding stop - 5 132.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000010803 Gabra1 ENSMUST00000207274 ENSMUSP00000147186 TRANSLATION protein_coding stop - 5 167.0 0.0 3.16 0.0 110.1 0.0 2,-1 0.0008 1 -2.0 MINOR ENSMUSG00000020722 Cacng1 ENSMUST00000021065 ENSMUSP00000021065 TRANSLATION protein_coding - CCDS25570.1 1 223.0 0.0 1.08 28.8 133.9 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000072915 Gm12258 ENSMUST00000093768 ENSMUSP00000091282 TRANSLATION protein_coding start - - 149.0 20.0 1.0 0.0 117.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000072915 Gm12258 ENSMUST00000143407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072915 Gm12258 ENSMUST00000139337 ENSMUSP00000117644 TRANSLATION protein_coding - - 2 627.0 32.0 1.32 0.0 250.4 0.0 -4,-5 0.8355 - 18.0 PRINCIPAL:1 ENSMUSG00000023764 Sfi1 ENSMUST00000144778 - NO_TRANSLATION retained_intron ENSMUSG00000023764 Sfi1 ENSMUST00000133882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023764 Sfi1 ENSMUST00000144359 - NO_TRANSLATION retained_intron ENSMUSG00000023764 Sfi1 ENSMUST00000132893 ENSMUSP00000118419 TRANSLATION nonsense_mediated_decay - - 5 365.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.1486 - -2.0 MINOR ENSMUSG00000023764 Sfi1 ENSMUST00000140846 ENSMUSP00000119905 TRANSLATION protein_coding - - 5 1124.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.2802 2 0.0 ALTERNATIVE:2 ENSMUSG00000023764 Sfi1 ENSMUST00000142315 ENSMUSP00000118364 TRANSLATION protein_coding stop - 5 85.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0419 - -2.0 MINOR ENSMUSG00000023764 Sfi1 ENSMUST00000118627 ENSMUSP00000113559 TRANSLATION protein_coding - - 1 90.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.56 - 0.0 ALTERNATIVE:2 ENSMUSG00000023764 Sfi1 ENSMUST00000141422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023764 Sfi1 ENSMUST00000081318 ENSMUSP00000080066 TRANSLATION protein_coding - CCDS36094.1 1 1216.0 0.0 0.0 0.7 0.0 0.0 -4,-6 0.5048 2 0.0 PRINCIPAL:3 ENSMUSG00000023764 Sfi1 ENSMUST00000153425 ENSMUSP00000121719 TRANSLATION protein_coding - - 5 1174.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.2854 2 0.0 ALTERNATIVE:2 ENSMUSG00000023764 Sfi1 ENSMUST00000143442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023764 Sfi1 ENSMUST00000101655 ENSMUSP00000099178 TRANSLATION protein_coding - - 5 1205.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.2977 2 0.0 ALTERNATIVE:2 ENSMUSG00000023764 Sfi1 ENSMUST00000144447 - NO_TRANSLATION retained_intron ENSMUSG00000023764 Sfi1 ENSMUST00000155763 ENSMUSP00000116369 TRANSLATION protein_coding start/stop - 5 151.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0436 - -2.0 MINOR ENSMUSG00000023764 Sfi1 ENSMUST00000126746 ENSMUSP00000122002 TRANSLATION nonsense_mediated_decay start - 5 376.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.1719 - -2.0 MINOR ENSMUSG00000023764 Sfi1 ENSMUST00000137633 - NO_TRANSLATION retained_intron ENSMUSG00000023764 Sfi1 ENSMUST00000146888 - NO_TRANSLATION retained_intron ENSMUSG00000023764 Sfi1 ENSMUST00000156655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023764 Sfi1 ENSMUST00000138126 - NO_TRANSLATION retained_intron ENSMUSG00000023764 Sfi1 ENSMUST00000066391 ENSMUSP00000067261 TRANSLATION protein_coding - - 5 1184.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.2871 2 0.0 ALTERNATIVE:2 ENSMUSG00000063564 Col23a1 ENSMUST00000151098 ENSMUSP00000119825 TRANSLATION protein_coding start - 5 95.0 0.0 0.92 0.0 39.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063564 Col23a1 ENSMUST00000102765 ENSMUSP00000099826 TRANSLATION protein_coding - CCDS24652.1 5 532.0 0.0 8.543 0.0 185.9 0.0 -3,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046442 Ppm1e ENSMUST00000055438 ENSMUSP00000061278 TRANSLATION protein_coding - CCDS25211.1 1 749.0 7.0 2.5 1.5 218.4 0.0 -4,-5 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000046442 Ppm1e ENSMUST00000155154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014177 Tvp23b ENSMUST00000014321 ENSMUSP00000014321 TRANSLATION protein_coding - CCDS24834.1 1 205.0 0.0 3.4 11.5 187.0 0.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000014177 Tvp23b ENSMUST00000140377 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014177 Tvp23b ENSMUST00000154176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014177 Tvp23b ENSMUST00000128698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069609 Cd300ld4 ENSMUST00000100240 ENSMUSP00000097811 TRANSLATION protein_coding - CCDS36368.1 1 245.0 0.0 1.0 0.0 52.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000018547 Pip4k2b ENSMUST00000018691 ENSMUSP00000018691 TRANSLATION protein_coding - CCDS25329.1 1 416.0 4.0 6.75 25.1 258.6 0.0 -4,-7 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000018547 Pip4k2b ENSMUST00000144012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020476 Dbnl ENSMUST00000020769 ENSMUSP00000020769 TRANSLATION protein_coding - CCDS48746.1 1 436.0 0.0 5.4 5.8 106.5 0.0 -4,-6 0.9252 16 9.845 MINOR ENSMUSG00000020476 Dbnl ENSMUST00000109845 ENSMUSP00000105471 TRANSLATION protein_coding - CCDS48747.1 1 432.0 0.0 5.4 8.8 106.5 0.0 -4,-6 0.9988 16 11.0 ALTERNATIVE:1 ENSMUSG00000020476 Dbnl ENSMUST00000102928 ENSMUSP00000099992 TRANSLATION protein_coding - CCDS24403.1 1 433.0 0.0 5.4 8.8 106.5 0.0 -4,-6 1.0 16 11.0 PRINCIPAL:4 ENSMUSG00000002052 Supt6 ENSMUST00000002121 ENSMUSP00000002121 TRANSLATION protein_coding - CCDS25095.1 1 1726.0 0.0 12.55 13.8 992.7 0.0 -4,-5 1.0 40 16.0 PRINCIPAL:1 ENSMUSG00000002052 Supt6 ENSMUST00000108314 - NO_TRANSLATION retained_intron ENSMUSG00000059504 Or2t44 ENSMUST00000076393 ENSMUSP00000075729 TRANSLATION protein_coding - CCDS24745.1 - 330.0 0.0 1.0 0.4 169.8 4.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059504 Or2t44 ENSMUST00000205189 ENSMUSP00000145387 TRANSLATION protein_coding - CCDS24745.1 3 330.0 0.0 1.0 0.4 169.8 4.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000070388 Fbxo39 ENSMUST00000108504 ENSMUSP00000104144 TRANSLATION protein_coding - CCDS36214.1 5 443.0 0.0 0.132 16.5 29.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057654 Or2t47 ENSMUST00000108824 ENSMUSP00000104452 TRANSLATION protein_coding - CCDS24734.1 3 310.0 0.0 1.0 0.4 152.0 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057654 Or2t47 ENSMUST00000216725 ENSMUSP00000150086 TRANSLATION protein_coding - CCDS24734.1 5 310.0 0.0 1.0 0.4 152.0 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057654 Or2t47 ENSMUST00000215717 ENSMUSP00000149506 TRANSLATION protein_coding - CCDS24734.1 5 310.0 0.0 1.0 0.4 152.0 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057654 Or2t47 ENSMUST00000073933 ENSMUSP00000073588 TRANSLATION protein_coding - CCDS24734.1 - 310.0 0.0 1.0 0.4 152.0 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000017550 Atad5 ENSMUST00000151815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017550 Atad5 ENSMUST00000154168 - NO_TRANSLATION retained_intron ENSMUSG00000017550 Atad5 ENSMUST00000017694 ENSMUSP00000017694 TRANSLATION protein_coding - CCDS25127.1 1 1826.0 14.0 0.73 0.0 26.2 0.0 -4,-7 1.0 13 12.0 PRINCIPAL:2 ENSMUSG00000017550 Atad5 ENSMUST00000108239 ENSMUSP00000103874 TRANSLATION protein_coding - - 5 1823.0 14.0 0.73 0.0 26.2 0.0 -4,-7 0.6073 13 12.0 ALTERNATIVE:2 ENSMUSG00000057098 Ebf1 ENSMUST00000081265 ENSMUSP00000080020 TRANSLATION protein_coding - CCDS24566.1 1 591.0 4.0 10.665 28.6 635.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:4 ENSMUSG00000057098 Ebf1 ENSMUST00000135993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057098 Ebf1 ENSMUST00000140822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057098 Ebf1 ENSMUST00000138452 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057098 Ebf1 ENSMUST00000149997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057098 Ebf1 ENSMUST00000109268 ENSMUSP00000104891 TRANSLATION protein_coding - - 5 584.0 4.0 10.5 25.6 635.3 0.0 -4,-5 0.8202 4 15.234 ALTERNATIVE:1 ENSMUSG00000057098 Ebf1 ENSMUST00000101326 ENSMUSP00000099857 TRANSLATION protein_coding - CCDS70165.1 1 592.0 4.0 10.665 25.6 635.3 0.0 -4,-5 0.9935 4 15.564 ALTERNATIVE:1 ENSMUSG00000000805 Car4 ENSMUST00000108076 ENSMUSP00000103711 TRANSLATION protein_coding start - 3 164.0 0.0 3.5 0.0 129.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000000805 Car4 ENSMUST00000103194 ENSMUSP00000099483 TRANSLATION protein_coding - CCDS25190.1 1 305.0 3.0 6.5 1.1 273.2 0.0 1,-2 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000000805 Car4 ENSMUST00000139416 - NO_TRANSLATION retained_intron ENSMUSG00000000805 Car4 ENSMUST00000138331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000805 Car4 ENSMUST00000150596 ENSMUSP00000121381 TRANSLATION nonsense_mediated_decay - - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000000805 Car4 ENSMUST00000127827 ENSMUSP00000115878 TRANSLATION nonsense_mediated_decay - - 2 38.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034520 Gjc1 ENSMUST00000131164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034520 Gjc1 ENSMUST00000107075 ENSMUSP00000102690 TRANSLATION protein_coding - CCDS25504.1 1 396.0 0.0 0.2 22.9 331.7 2.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000034520 Gjc1 ENSMUST00000092567 ENSMUSP00000090228 TRANSLATION protein_coding - CCDS25504.1 1 396.0 0.0 0.2 22.9 331.7 2.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000034520 Gjc1 ENSMUST00000155089 - NO_TRANSLATION retained_intron ENSMUSG00000034520 Gjc1 ENSMUST00000068933 ENSMUSP00000066901 TRANSLATION protein_coding - CCDS25504.1 1 396.0 0.0 0.2 22.9 331.7 2.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020755 Sap30bp ENSMUST00000021101 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020755 Sap30bp ENSMUST00000140991 ENSMUSP00000114844 TRANSLATION protein_coding - CCDS25651.1 1 308.0 0.0 2.9 20.2 117.0 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000020755 Sap30bp ENSMUST00000131737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020755 Sap30bp ENSMUST00000146209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090266 Mettl23 ENSMUST00000176799 - NO_TRANSLATION retained_intron ENSMUSG00000090266 Mettl23 ENSMUST00000106370 ENSMUSP00000101978 TRANSLATION protein_coding - CCDS25679.2 1 253.0 15.0 4.15 0.0 64.0 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000090266 Mettl23 ENSMUST00000132593 ENSMUSP00000135469 TRANSLATION nonsense_mediated_decay start - 3 46.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000090266 Mettl23 ENSMUST00000143184 ENSMUSP00000119131 TRANSLATION protein_coding start - 2 110.0 14.0 1.0 0.0 30.5 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000090266 Mettl23 ENSMUST00000176765 - NO_TRANSLATION retained_intron ENSMUSG00000090266 Mettl23 ENSMUST00000128784 - NO_TRANSLATION retained_intron ENSMUSG00000090266 Mettl23 ENSMUST00000140869 ENSMUSP00000135321 TRANSLATION nonsense_mediated_decay start - 5 76.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000090266 Mettl23 ENSMUST00000175930 - NO_TRANSLATION retained_intron ENSMUSG00000043448 Gjc2 ENSMUST00000108793 ENSMUSP00000104421 TRANSLATION protein_coding - CCDS24760.1 1 440.0 0.0 0.04 1.1 328.2 4.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000043448 Gjc2 ENSMUST00000108790 ENSMUSP00000104418 TRANSLATION protein_coding - CCDS24760.1 1 440.0 0.0 0.04 1.1 328.2 4.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000038178 Slc43a2 ENSMUST00000042561 ENSMUSP00000046074 TRANSLATION protein_coding - CCDS25051.1 1 568.0 0.0 0.0 17.4 51.2 15.0 -3,-6 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000038178 Slc43a2 ENSMUST00000108433 ENSMUSP00000104071 TRANSLATION protein_coding - CCDS25051.1 1 568.0 0.0 0.0 17.4 51.2 15.0 -3,-6 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000038178 Slc43a2 ENSMUST00000134112 - NO_TRANSLATION retained_intron ENSMUSG00000038178 Slc43a2 ENSMUST00000127226 ENSMUSP00000117264 TRANSLATION protein_coding stop - 5 167.0 0.0 0.0 0.0 0.0 8.0 -3,-6 0.0042 - -2.0 MINOR ENSMUSG00000038178 Slc43a2 ENSMUST00000149727 ENSMUSP00000116255 TRANSLATION protein_coding stop - 2 108.0 0.0 0.0 0.0 0.0 4.0 -3,-6 0.0024 - -2.0 MINOR ENSMUSG00000038178 Slc43a2 ENSMUST00000145901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038178 Slc43a2 ENSMUST00000155981 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038178 Slc43a2 ENSMUST00000143035 ENSMUSP00000123101 TRANSLATION protein_coding stop - 3 149.0 0.0 0.0 0.0 0.0 6.0 -3,-6 0.0024 - -2.0 MINOR ENSMUSG00000038178 Slc43a2 ENSMUST00000152775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038178 Slc43a2 ENSMUST00000151891 - NO_TRANSLATION retained_intron ENSMUSG00000038178 Slc43a2 ENSMUST00000169547 ENSMUSP00000126838 TRANSLATION protein_coding - CCDS25051.1 1 568.0 0.0 0.0 17.4 51.2 15.0 -3,-6 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000020893 Per1 ENSMUST00000142392 ENSMUSP00000121713 TRANSLATION nonsense_mediated_decay - - 5 572.0 0.0 7.03 0.0 43.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020893 Per1 ENSMUST00000101004 ENSMUSP00000098566 TRANSLATION protein_coding - - 1 827.0 0.0 7.03 0.0 43.9 0.0 -4,-5 0.0046 9 2.802 MINOR ENSMUSG00000020893 Per1 ENSMUST00000166748 ENSMUSP00000132635 TRANSLATION protein_coding - CCDS24882.1 1 1291.0 0.0 8.63 3.2 299.2 0.0 -4,-5 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000020893 Per1 ENSMUST00000132462 ENSMUSP00000122164 TRANSLATION protein_coding stop - 3 106.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020893 Per1 ENSMUST00000102605 ENSMUSP00000099665 TRANSLATION protein_coding - - 1 1271.0 0.0 7.88 0.0 299.2 0.0 -4,-5 0.2216 9 10.5 MINOR ENSMUSG00000020893 Per1 ENSMUST00000021271 ENSMUSP00000021271 TRANSLATION protein_coding - CCDS24882.1 1 1291.0 0.0 8.63 3.2 299.2 0.0 -4,-5 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000018470 Kcnab3 ENSMUST00000134561 - NO_TRANSLATION retained_intron ENSMUSG00000018470 Kcnab3 ENSMUST00000142328 - NO_TRANSLATION retained_intron ENSMUSG00000018470 Kcnab3 ENSMUST00000018614 ENSMUSP00000018614 TRANSLATION protein_coding - CCDS24890.1 1 404.0 29.0 9.25 13.5 230.4 0.0 -4,-6 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000020804 Aanat ENSMUST00000123507 ENSMUSP00000115999 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020804 Aanat ENSMUST00000021160 ENSMUSP00000021160 TRANSLATION nonsense_mediated_decay - - 1 105.0 1.0 1.8 0.1 0.0 0.0 -4,-5 0.0014 - -2.0 MINOR ENSMUSG00000020804 Aanat ENSMUST00000142978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020804 Aanat ENSMUST00000153476 ENSMUSP00000122895 TRANSLATION protein_coding - CCDS25671.1 1 205.0 24.0 2.8 3.7 52.9 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000020804 Aanat ENSMUST00000132601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038692 Hoxb4 ENSMUST00000049241 ENSMUSP00000048002 TRANSLATION protein_coding - CCDS25297.1 1 250.0 0.0 1.0 0.8 77.0 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000085486 Ccdc200 ENSMUST00000154147 ENSMUSP00000147360 TRANSLATION protein_coding - - 3 149.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.1104 4 6.0 ALTERNATIVE:2 ENSMUSG00000085486 Ccdc200 ENSMUST00000209862 ENSMUSP00000148108 TRANSLATION protein_coding - - 5 172.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.691 4 6.0 PRINCIPAL:2 ENSMUSG00000020838 Slc6a4 ENSMUST00000021195 ENSMUSP00000021195 TRANSLATION protein_coding - CCDS25074.1 1 630.0 10.0 12.35 12.5 849.3 12.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000020838 Slc6a4 ENSMUST00000137819 - NO_TRANSLATION retained_intron ENSMUSG00000020838 Slc6a4 ENSMUST00000129572 ENSMUSP00000115264 TRANSLATION protein_coding stop - 5 158.0 5.0 1.6 0.0 238.2 3.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020838 Slc6a4 ENSMUST00000108402 ENSMUSP00000104039 TRANSLATION protein_coding - CCDS25074.1 5 630.0 10.0 12.35 12.5 849.3 12.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000034993 Vat1 ENSMUST00000040430 ENSMUSP00000048350 TRANSLATION protein_coding - CCDS25472.1 1 406.0 19.0 5.75 1.7 72.0 0.0 -4,-5 1.0 17 19.0 PRINCIPAL:1 ENSMUSG00000025150 Cbr2 ENSMUST00000149450 - NO_TRANSLATION retained_intron ENSMUSG00000025150 Cbr2 ENSMUST00000154565 ENSMUSP00000117739 TRANSLATION protein_coding start/stop - 5 154.0 19.0 4.58 0.0 78.8 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000025150 Cbr2 ENSMUST00000026148 ENSMUSP00000026148 TRANSLATION protein_coding - CCDS25756.1 1 244.0 28.0 6.74 9.3 181.9 0.0 -4,-2 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000025150 Cbr2 ENSMUST00000154479 - NO_TRANSLATION retained_intron ENSMUSG00000038453 Srcin1 ENSMUST00000142123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038453 Srcin1 ENSMUST00000238342 ENSMUSP00000158676 TRANSLATION protein_coding - - - 1357.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.2767 51 6.0 ALTERNATIVE:2 ENSMUSG00000038453 Srcin1 ENSMUST00000238314 ENSMUSP00000158711 TRANSLATION protein_coding - - - 1225.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.3725 54 6.0 ALTERNATIVE:2 ENSMUSG00000038453 Srcin1 ENSMUST00000107596 ENSMUSP00000103222 TRANSLATION protein_coding - CCDS36294.1 1 1217.0 0.0 1.5 0.0 0.0 0.0 -4,-5 1.0 52 6.0 PRINCIPAL:2 ENSMUSG00000038453 Srcin1 ENSMUST00000238233 ENSMUSP00000158656 TRANSLATION protein_coding - - - 1055.0 0.0 1.5 0.0 0.0 0.0 -4,-2 0.2341 48 6.0 ALTERNATIVE:2 ENSMUSG00000038453 Srcin1 ENSMUST00000107590 ENSMUSP00000103216 TRANSLATION protein_coding - - 5 1198.0 0.0 1.5 0.1 0.0 0.0 -4,-2 0.3414 51 6.0 ALTERNATIVE:2 ENSMUSG00000038453 Srcin1 ENSMUST00000107593 ENSMUSP00000103219 TRANSLATION protein_coding - - 5 1174.0 0.0 1.5 0.0 0.0 0.0 -4,-2 0.2975 51 6.0 ALTERNATIVE:2 ENSMUSG00000038453 Srcin1 ENSMUST00000126287 ENSMUSP00000116444 TRANSLATION protein_coding stop - 5 473.0 0.0 1.5 0.0 0.0 0.0 -4,-2 0.1064 16 -2.0 MINOR ENSMUSG00000038453 Srcin1 ENSMUST00000238597 ENSMUSP00000158716 TRANSLATION protein_coding - - - 1205.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.337 51 6.0 ALTERNATIVE:2 ENSMUSG00000038453 Srcin1 ENSMUST00000145845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038453 Srcin1 ENSMUST00000207653 ENSMUSP00000146591 TRANSLATION protein_coding stop - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0302 1 -2.0 MINOR ENSMUSG00000048852 Gm12185 ENSMUST00000059930 ENSMUSP00000054351 TRANSLATION protein_coding - CCDS36142.1 1 835.0 26.0 0.8 0.1 903.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000048852 Gm12185 ENSMUST00000129318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048852 Gm12185 ENSMUST00000094476 ENSMUSP00000092049 TRANSLATION protein_coding - CCDS36142.1 5 835.0 26.0 0.8 0.1 903.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000048076 Arf1 ENSMUST00000163300 ENSMUSP00000126120 TRANSLATION protein_coding - CCDS24765.1 1 181.0 19.0 4.0 36.9 263.9 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000048076 Arf1 ENSMUST00000061242 ENSMUSP00000079905 TRANSLATION protein_coding - CCDS24765.1 1 181.0 19.0 4.0 36.9 263.9 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000017221 Psmd3 ENSMUST00000123676 ENSMUSP00000116968 TRANSLATION protein_coding start/stop - 5 222.0 0.0 3.91 0.0 33.1 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000017221 Psmd3 ENSMUST00000149489 - NO_TRANSLATION retained_intron ENSMUSG00000017221 Psmd3 ENSMUST00000142790 - NO_TRANSLATION retained_intron ENSMUSG00000017221 Psmd3 ENSMUST00000152102 - NO_TRANSLATION retained_intron ENSMUSG00000017221 Psmd3 ENSMUST00000017365 ENSMUSP00000017365 TRANSLATION protein_coding - CCDS25359.1 1 530.0 0.0 11.83 11.0 183.7 0.0 -4,-5 1.0 24 15.0 PRINCIPAL:1 ENSMUSG00000035849 Krt222 ENSMUST00000038214 ENSMUSP00000044561 TRANSLATION protein_coding - - 1 254.0 0.0 2.375 5.9 89.0 0.0 -4,-5 0.3372 4 9.744 MINOR ENSMUSG00000035849 Krt222 ENSMUST00000103132 ENSMUSP00000099421 TRANSLATION protein_coding - CCDS25375.1 1 294.0 0.0 3.705 11.0 106.8 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000035849 Krt222 ENSMUST00000154622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004393 Ddx56 ENSMUST00000151446 ENSMUSP00000122368 TRANSLATION protein_coding stop - 2 237.0 14.0 4.15 0.0 113.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000004393 Ddx56 ENSMUST00000155874 - NO_TRANSLATION retained_intron ENSMUSG00000004393 Ddx56 ENSMUST00000004507 ENSMUSP00000004507 TRANSLATION protein_coding - CCDS24414.1 1 546.0 14.0 6.05 9.4 235.9 0.0 -4,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000004393 Ddx56 ENSMUST00000139073 - NO_TRANSLATION retained_intron ENSMUSG00000038517 Tbkbp1 ENSMUST00000066078 ENSMUSP00000065461 TRANSLATION protein_coding - - 5 611.0 4.0 0.5 4.6 62.0 0.0 -4,-5 0.8307 2 14.0 ALTERNATIVE:1 ENSMUSG00000038517 Tbkbp1 ENSMUST00000107613 ENSMUSP00000103238 TRANSLATION nonsense_mediated_decay - - 1 153.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0318 - -2.0 MINOR ENSMUSG00000038517 Tbkbp1 ENSMUST00000107615 ENSMUSP00000103240 TRANSLATION protein_coding - CCDS48895.1 5 610.0 4.0 0.5 4.6 62.0 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:4 ENSMUSG00000038517 Tbkbp1 ENSMUST00000118375 ENSMUSP00000112396 TRANSLATION protein_coding - CCDS48895.1 5 610.0 4.0 0.5 4.6 62.0 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:4 ENSMUSG00000038517 Tbkbp1 ENSMUST00000146374 ENSMUSP00000114460 TRANSLATION protein_coding stop - 3 151.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0318 - -2.0 MINOR ENSMUSG00000038517 Tbkbp1 ENSMUST00000107614 ENSMUSP00000103239 TRANSLATION protein_coding - - 5 611.0 4.0 0.5 4.6 62.0 0.0 -4,-5 0.8307 2 14.0 ALTERNATIVE:1 ENSMUSG00000019505 Ubb ENSMUST00000136938 ENSMUSP00000117361 TRANSLATION protein_coding stop - 2 236.0 0.0 1.0 0.0 348.9 0.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000019505 Ubb ENSMUST00000019649 ENSMUSP00000019649 TRANSLATION protein_coding - CCDS24826.1 1 305.0 0.0 2.0 10.5 463.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000017286 Glod4 ENSMUST00000168055 ENSMUSP00000130675 TRANSLATION protein_coding start/stop - 5 97.0 0.0 3.33 0.0 0.0 0.0 -4,-5 0.001 3 -2.0 MINOR ENSMUSG00000017286 Glod4 ENSMUST00000167883 - NO_TRANSLATION retained_intron ENSMUSG00000017286 Glod4 ENSMUST00000170590 ENSMUSP00000129009 TRANSLATION nonsense_mediated_decay - - 5 66.0 0.0 1.49 0.0 0.0 0.0 -4,0 0.0088 4 -2.0 MINOR ENSMUSG00000017286 Glod4 ENSMUST00000169532 - NO_TRANSLATION retained_intron ENSMUSG00000017286 Glod4 ENSMUST00000170710 ENSMUSP00000131788 TRANSLATION protein_coding - - 1 279.0 0.0 8.0825 0.0 0.0 0.0 -4,-5 0.0112 16 4.182 MINOR ENSMUSG00000017286 Glod4 ENSMUST00000017430 ENSMUSP00000017430 TRANSLATION protein_coding - CCDS25063.1 1 298.0 0.0 8.99 22.7 0.0 0.0 -4,0 1.0 19 10.0 PRINCIPAL:1 ENSMUSG00000017286 Glod4 ENSMUST00000170017 ENSMUSP00000132496 TRANSLATION nonsense_mediated_decay - - 5 61.0 0.0 1.49 0.0 0.0 0.0 -4,0 0.0088 4 -2.0 MINOR ENSMUSG00000017286 Glod4 ENSMUST00000164022 ENSMUSP00000126699 TRANSLATION protein_coding start/stop - 5 212.0 0.0 6.33 0.0 0.0 0.0 -4,-5 0.0062 13 -2.0 MINOR ENSMUSG00000017286 Glod4 ENSMUST00000169701 ENSMUSP00000131174 TRANSLATION protein_coding - - 2 279.0 0.0 8.24 0.0 0.0 0.0 -4,0 0.0228 17 4.5 MINOR ENSMUSG00000053783 Liat1 ENSMUST00000066408 ENSMUSP00000063358 TRANSLATION protein_coding - CCDS25059.1 1 228.0 0.0 0.0 2.3 0.0 0.0 -4,-5 0.8935 - 1.0 PRINCIPAL:1 ENSMUSG00000018659 Pnpo ENSMUST00000107629 ENSMUSP00000103255 TRANSLATION protein_coding - - 3 102.0 1.0 1.2 0.0 0.0 0.0 -4,-1 0.0 2 0.0 MINOR ENSMUSG00000018659 Pnpo ENSMUST00000153896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018659 Pnpo ENSMUST00000018803 ENSMUSP00000018803 TRANSLATION protein_coding - CCDS25308.1 1 261.0 20.0 5.45 8.7 153.7 0.0 -4,-1 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000020888 Dvl2 ENSMUST00000130820 - NO_TRANSLATION retained_intron ENSMUSG00000020888 Dvl2 ENSMUST00000019362 ENSMUSP00000019362 TRANSLATION protein_coding - CCDS24930.1 1 736.0 0.0 6.7 1.5 677.3 0.0 -4,-5 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000020888 Dvl2 ENSMUST00000135422 - NO_TRANSLATION retained_intron ENSMUSG00000020888 Dvl2 ENSMUST00000152732 - NO_TRANSLATION retained_intron ENSMUSG00000020888 Dvl2 ENSMUST00000102575 ENSMUSP00000099635 TRANSLATION nonsense_mediated_decay - CCDS24930.1 1 736.0 0.0 6.7 1.5 677.3 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000020888 Dvl2 ENSMUST00000190940 ENSMUSP00000140073 TRANSLATION protein_coding - CCDS24930.1 1 736.0 0.0 6.7 1.5 677.3 0.0 -4,-5 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000020888 Dvl2 ENSMUST00000149477 - NO_TRANSLATION retained_intron ENSMUSG00000020928 Higd1b ENSMUST00000107072 ENSMUSP00000102687 TRANSLATION protein_coding - CCDS36345.1 5 98.0 0.0 2.5 14.7 57.1 2.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020928 Higd1b ENSMUST00000107073 ENSMUSP00000102688 TRANSLATION protein_coding - CCDS36345.1 2 98.0 0.0 2.5 14.7 57.1 2.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020928 Higd1b ENSMUST00000021302 ENSMUSP00000021302 TRANSLATION protein_coding - CCDS36345.1 1 98.0 0.0 2.5 14.7 57.1 2.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000018846 Pank3 ENSMUST00000018990 ENSMUSP00000018990 TRANSLATION protein_coding - CCDS24543.1 1 370.0 19.0 5.5 25.2 388.7 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000018858 Mrpl58 ENSMUST00000155134 - NO_TRANSLATION retained_intron ENSMUSG00000018858 Mrpl58 ENSMUST00000133192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018858 Mrpl58 ENSMUST00000153983 ENSMUSP00000116746 TRANSLATION protein_coding - CCDS83928.1 1 206.0 0.0 4.25 12.5 68.4 0.0 0,3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000018858 Mrpl58 ENSMUST00000128632 - NO_TRANSLATION retained_intron ENSMUSG00000018858 Mrpl58 ENSMUST00000021079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018858 Mrpl58 ENSMUST00000106539 ENSMUSP00000102149 TRANSLATION protein_coding - - 1 186.0 0.0 3.75 1.5 23.7 0.0 0,3 0.0561 6 7.203 MINOR ENSMUSG00000018858 Mrpl58 ENSMUST00000134386 - NO_TRANSLATION retained_intron ENSMUSG00000018858 Mrpl58 ENSMUST00000103036 ENSMUSP00000099325 TRANSLATION protein_coding - CCDS25632.1 1 177.0 0.0 3.5 4.6 68.4 0.0 0,3 0.3302 5 11.439 MINOR ENSMUSG00000018858 Mrpl58 ENSMUST00000122946 ENSMUSP00000116245 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 0.75 0.0 0.0 0.0 0,3 0.0004 2 -2.0 MINOR ENSMUSG00000018858 Mrpl58 ENSMUST00000135619 - NO_TRANSLATION retained_intron ENSMUSG00000070337 Gpr179 ENSMUST00000093942 ENSMUSP00000091474 TRANSLATION protein_coding - CCDS36292.1 5 2293.0 0.0 2.048 0.0 141.1 0.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000070337 Gpr179 ENSMUST00000162544 - NO_TRANSLATION retained_intron ENSMUSG00000047205 Dusp18 ENSMUST00000109996 ENSMUSP00000105624 TRANSLATION protein_coding - CCDS24369.1 5 188.0 8.0 1.0 14.7 111.4 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000047205 Dusp18 ENSMUST00000055931 ENSMUSP00000057346 TRANSLATION protein_coding - CCDS24369.1 1 188.0 8.0 1.0 14.7 111.4 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000057219 Armc7 ENSMUST00000136985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057219 Armc7 ENSMUST00000126533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057219 Armc7 ENSMUST00000140181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057219 Armc7 ENSMUST00000035240 ENSMUSP00000046120 TRANSLATION protein_coding - CCDS25636.1 1 198.0 0.0 3.0 7.8 26.3 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000020374 Rasgef1c ENSMUST00000063444 ENSMUSP00000065619 TRANSLATION protein_coding - CCDS83798.1 1 469.0 0.0 4.47 18.8 225.3 0.0 -4,-6 0.9823 2 12.0 ALTERNATIVE:1 ENSMUSG00000020374 Rasgef1c ENSMUST00000109172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020374 Rasgef1c ENSMUST00000093141 ENSMUSP00000090828 TRANSLATION protein_coding - - 1 425.0 0.0 4.17 0.0 178.7 0.0 -4,-6 0.005 2 5.4 MINOR ENSMUSG00000020374 Rasgef1c ENSMUST00000093142 ENSMUSP00000090829 TRANSLATION protein_coding - CCDS24625.1 1 466.0 0.0 4.47 18.8 225.3 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000078131 Krtap1-3 ENSMUST00000104930 ENSMUSP00000100535 TRANSLATION protein_coding - CCDS36310.1 - 173.0 0.0 0.0 2.9 188.1 0.0 -3,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000020401 Garin3 ENSMUST00000139280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020401 Garin3 ENSMUST00000063166 ENSMUSP00000055079 TRANSLATION protein_coding - CCDS24576.1 1 665.0 0.0 0.32 0.0 100.7 0.0 -4,-7 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000046731 Kctd11 ENSMUST00000238978 ENSMUSP00000159163 TRANSLATION protein_coding - CCDS24918.1 - 232.0 0.0 0.48 8.8 37.9 0.0 -4,-5 1.0 - 8.478 MINOR ENSMUSG00000046731 Kctd11 ENSMUST00000050555 ENSMUSP00000059107 TRANSLATION protein_coding - - - 271.0 0.0 1.28 0.0 70.5 0.0 -4,-7 0.6106 - 12.0 PRINCIPAL:1 ENSMUSG00000025161 Slc16a3 ENSMUST00000140467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025161 Slc16a3 ENSMUST00000168579 ENSMUSP00000125846 TRANSLATION protein_coding - CCDS25761.1 1 470.0 0.0 4.64 8.1 105.4 11.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000025161 Slc16a3 ENSMUST00000100130 ENSMUSP00000097706 TRANSLATION protein_coding - CCDS25761.1 1 470.0 0.0 4.64 8.1 105.4 11.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000025161 Slc16a3 ENSMUST00000070653 ENSMUSP00000068854 TRANSLATION protein_coding - CCDS25761.1 1 470.0 0.0 4.64 8.1 105.4 11.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000025161 Slc16a3 ENSMUST00000134540 - NO_TRANSLATION retained_intron ENSMUSG00000025161 Slc16a3 ENSMUST00000154187 ENSMUSP00000122784 TRANSLATION protein_coding stop - 2 253.0 0.0 2.64 0.0 79.4 5.0 -4,-7 0.0035 - -2.0 MINOR ENSMUSG00000025161 Slc16a3 ENSMUST00000133029 ENSMUSP00000115047 TRANSLATION protein_coding stop - 3 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000025161 Slc16a3 ENSMUST00000129473 ENSMUSP00000117275 TRANSLATION protein_coding stop - 3 291.0 0.0 3.44 0.0 88.8 9.0 -4,-7 0.0065 1 -2.0 MINOR ENSMUSG00000020270 Smim23 ENSMUST00000020508 ENSMUSP00000020508 TRANSLATION protein_coding - CCDS48767.1 1 136.0 0.0 1.0 0.0 225.4 1.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020270 Smim23 ENSMUST00000109365 ENSMUSP00000104989 TRANSLATION protein_coding - - 5 76.0 0.0 0.0 0.0 102.6 1.0 -4,-7 0.0024 - 0.0 MINOR ENSMUSG00000041695 Kcnj2 ENSMUST00000042970 ENSMUSP00000037192 TRANSLATION protein_coding - CCDS25594.1 1 428.0 0.0 1.0 33.9 608.0 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000048807 Slc35e4 ENSMUST00000109995 ENSMUSP00000105622 TRANSLATION protein_coding - - 5 351.0 0.0 2.0 11.0 74.9 8.0 -4,-5 0.7914 - 11.0 ALTERNATIVE:1 ENSMUSG00000048807 Slc35e4 ENSMUST00000051207 ENSMUSP00000050978 TRANSLATION protein_coding - CCDS24370.1 1 350.0 0.0 2.0 11.0 76.2 8.0 -4,-5 1.0 1 11.0 PRINCIPAL:4 ENSMUSG00000020159 Gabrp ENSMUST00000020366 ENSMUSP00000020366 TRANSLATION protein_coding - CCDS24535.1 1 440.0 0.0 5.3 10.2 239.0 0.0 1,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020159 Gabrp ENSMUST00000135350 ENSMUSP00000120500 TRANSLATION protein_coding stop - 2 58.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0019 - -2.0 MINOR ENSMUSG00000000317 Bcl6b ENSMUST00000153449 ENSMUSP00000121365 TRANSLATION protein_coding stop - 5 116.0 0.0 1.8 0.0 69.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000317 Bcl6b ENSMUST00000140542 - NO_TRANSLATION retained_intron ENSMUSG00000000317 Bcl6b ENSMUST00000000326 ENSMUSP00000000326 TRANSLATION protein_coding - CCDS24939.1 1 474.0 19.0 4.7 9.4 131.1 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000020116 Pno1 ENSMUST00000123754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020116 Pno1 ENSMUST00000020317 ENSMUSP00000020317 TRANSLATION protein_coding - CCDS24449.1 1 248.0 0.0 5.0 3.5 0.0 0.0 -4,-5 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000020737 Jpt1 ENSMUST00000142238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020737 Jpt1 ENSMUST00000145104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020737 Jpt1 ENSMUST00000155399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020737 Jpt1 ENSMUST00000139980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020737 Jpt1 ENSMUST00000021083 ENSMUSP00000021083 TRANSLATION protein_coding - CCDS25638.1 1 154.0 0.0 0.0 17.8 0.0 0.0 -4,-7 1.0 5 4.0 PRINCIPAL:1 ENSMUSG00000094805 Or9e1 ENSMUST00000071625 ENSMUSP00000071553 TRANSLATION protein_coding - CCDS24750.1 - 308.0 0.0 1.0 9.4 174.6 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094805 Or9e1 ENSMUST00000216473 ENSMUSP00000150870 TRANSLATION protein_coding - CCDS24750.1 5 308.0 0.0 1.0 9.4 174.6 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094805 Or9e1 ENSMUST00000214776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018509 Cenpv ENSMUST00000156349 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018509 Cenpv ENSMUST00000018653 ENSMUSP00000018653 TRANSLATION protein_coding - CCDS48818.1 1 252.0 4.0 4.55 1.5 0.0 0.0 -4,-1 1.0 6 11.0 PRINCIPAL:1 ENSMUSG00000018509 Cenpv ENSMUST00000135497 - NO_TRANSLATION retained_intron ENSMUSG00000018509 Cenpv ENSMUST00000138772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018509 Cenpv ENSMUST00000123181 ENSMUSP00000124585 TRANSLATION nonsense_mediated_decay start - 3 96.0 2.0 1.8 0.0 0.0 0.0 -4,-5 0.0045 1 -2.0 MINOR ENSMUSG00000018509 Cenpv ENSMUST00000123542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018862 Otop3 ENSMUST00000019006 ENSMUSP00000019006 TRANSLATION protein_coding - CCDS25629.1 2 596.0 0.0 2.73 0.0 137.7 12.0 -4,-5 0.1431 1 10.242 MINOR ENSMUSG00000018862 Otop3 ENSMUST00000106543 ENSMUSP00000102153 TRANSLATION protein_coding - CCDS83926.1 1 577.0 0.0 3.23 2.2 150.3 12.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000048442 Smim5 ENSMUST00000152171 ENSMUSP00000139148 TRANSLATION protein_coding - CCDS70347.1 1 78.0 0.0 0.0 15.6 80.7 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000048442 Smim5 ENSMUST00000131566 ENSMUSP00000139287 TRANSLATION protein_coding - - 2 51.0 0.0 0.0 0.0 45.5 0.0 -4,-5 0.0 - 3.384 MINOR ENSMUSG00000048442 Smim5 ENSMUST00000142089 ENSMUSP00000138928 TRANSLATION protein_coding - CCDS70347.1 1 78.0 0.0 0.0 15.6 80.7 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000045377 Tmem88 ENSMUST00000050140 ENSMUSP00000055528 TRANSLATION protein_coding - CCDS24894.1 1 159.0 0.0 0.8 8.9 0.0 0.0 -4,-7 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000051452 Gm11437 ENSMUST00000050771 ENSMUSP00000056084 TRANSLATION protein_coding - CCDS25184.1 1 290.0 0.0 1.0 2.3 320.4 0.0 -4,-6 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000050343 Or1ad6 ENSMUST00000213259 ENSMUSP00000149432 TRANSLATION protein_coding - CCDS24644.1 5 315.0 0.0 1.0 6.6 182.0 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050343 Or1ad6 ENSMUST00000052285 ENSMUSP00000058119 TRANSLATION protein_coding - CCDS24644.1 - 315.0 0.0 1.0 6.6 182.0 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000017132 Cyth1 ENSMUST00000151165 ENSMUSP00000114792 TRANSLATION protein_coding - - 2 399.0 12.0 10.25 28.4 333.3 0.0 -4,-5 0.8392 7 17.58 ALTERNATIVE:1 ENSMUSG00000017132 Cyth1 ENSMUST00000100181 ENSMUSP00000097756 TRANSLATION protein_coding start - 1 460.0 12.0 9.62 0.0 331.2 0.0 -4,-5 0.0199 6 -2.0 MINOR ENSMUSG00000017132 Cyth1 ENSMUST00000141243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017132 Cyth1 ENSMUST00000017276 ENSMUSP00000017276 TRANSLATION protein_coding - CCDS48997.1 1 397.0 12.0 10.25 31.6 333.3 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:4 ENSMUSG00000017132 Cyth1 ENSMUST00000131115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048895 Cdk5r1 ENSMUST00000147694 ENSMUSP00000120964 TRANSLATION protein_coding stop - 1 138.0 0.0 0.0 0.0 25.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000048895 Cdk5r1 ENSMUST00000053413 ENSMUSP00000099514 TRANSLATION protein_coding - CCDS25134.1 - 307.0 0.0 1.0 30.7 353.6 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000049041 Or1r1 ENSMUST00000053874 ENSMUSP00000059548 TRANSLATION protein_coding - CCDS25022.1 - 314.0 0.0 1.0 5.7 169.2 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049041 Or1r1 ENSMUST00000214334 ENSMUSP00000149170 TRANSLATION protein_coding - CCDS25022.1 5 314.0 0.0 1.0 5.7 169.2 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049041 Or1r1 ENSMUST00000117510 ENSMUSP00000113005 TRANSLATION protein_coding - CCDS25022.1 3 314.0 0.0 1.0 5.7 169.2 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038217 Tlcd2 ENSMUST00000043598 ENSMUSP00000042958 TRANSLATION protein_coding - CCDS48850.1 1 310.0 0.0 4.5 0.0 62.5 3.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000038217 Tlcd2 ENSMUST00000153236 - NO_TRANSLATION retained_intron ENSMUSG00000038217 Tlcd2 ENSMUST00000108435 ENSMUSP00000104074 TRANSLATION protein_coding - CCDS70238.1 1 188.0 0.0 3.65 0.0 58.0 2.0 -4,-2 0.0399 - 9.87 MINOR ENSMUSG00000038217 Tlcd2 ENSMUST00000124718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025137 Pcyt2 ENSMUST00000106187 - NO_TRANSLATION retained_intron ENSMUSG00000025137 Pcyt2 ENSMUST00000134671 - NO_TRANSLATION retained_intron ENSMUSG00000025137 Pcyt2 ENSMUST00000026129 ENSMUSP00000026129 TRANSLATION protein_coding - CCDS25747.1 1 404.0 5.0 7.88 4.3 157.3 0.0 -4,-7 0.5716 14 16.998 MINOR ENSMUSG00000025137 Pcyt2 ENSMUST00000143502 - NO_TRANSLATION retained_intron ENSMUSG00000025137 Pcyt2 ENSMUST00000106188 ENSMUSP00000101794 TRANSLATION protein_coding - CCDS83946.1 1 386.0 5.0 8.38 7.6 157.3 0.0 -4,-7 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000025137 Pcyt2 ENSMUST00000124504 - NO_TRANSLATION retained_intron ENSMUSG00000025137 Pcyt2 ENSMUST00000126148 - NO_TRANSLATION retained_intron ENSMUSG00000025137 Pcyt2 ENSMUST00000142049 - NO_TRANSLATION retained_intron ENSMUSG00000025137 Pcyt2 ENSMUST00000160059 - NO_TRANSLATION retained_intron ENSMUSG00000025137 Pcyt2 ENSMUST00000145356 - NO_TRANSLATION retained_intron ENSMUSG00000025137 Pcyt2 ENSMUST00000126723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025137 Pcyt2 ENSMUST00000124468 - NO_TRANSLATION retained_intron ENSMUSG00000001983 Taco1 ENSMUST00000002048 ENSMUSP00000002048 TRANSLATION protein_coding - CCDS25547.1 1 294.0 0.0 4.5 6.4 212.6 0.0 -3,1 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000005237 Dnah2 ENSMUST00000208777 ENSMUSP00000146424 TRANSLATION protein_coding start/stop - 5 232.0 0.0 2.075 0.0 196.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000005237 Dnah2 ENSMUST00000151811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005237 Dnah2 ENSMUST00000035539 ENSMUSP00000047329 TRANSLATION protein_coding - - 5 4456.0 62.0 56.019 0.0 3009.0 0.0 -4,-7 0.7844 16 13.34 ALTERNATIVE:2 ENSMUSG00000005237 Dnah2 ENSMUST00000108659 ENSMUSP00000104299 TRANSLATION protein_coding - CCDS36192.1 5 4462.0 62.0 56.349 0.0 3009.0 0.0 -4,-7 1.0 16 14.0 PRINCIPAL:4 ENSMUSG00000005237 Dnah2 ENSMUST00000149991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005237 Dnah2 ENSMUST00000154985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020747 Tmem94 ENSMUST00000093912 ENSMUSP00000091440 TRANSLATION protein_coding - CCDS25646.1 1 1360.0 0.0 0.0 8.7 0.0 16.0 -4,-5 1.0 9 3.0 PRINCIPAL:2 ENSMUSG00000020747 Tmem94 ENSMUST00000141871 ENSMUSP00000118396 TRANSLATION protein_coding stop - 3 94.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0167 1 -2.0 MINOR ENSMUSG00000020747 Tmem94 ENSMUST00000103034 ENSMUSP00000099323 TRANSLATION protein_coding stop - 3 77.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0138 1 -2.0 MINOR ENSMUSG00000020747 Tmem94 ENSMUST00000136720 ENSMUSP00000122111 TRANSLATION protein_coding stop - 2 90.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0167 1 -2.0 MINOR ENSMUSG00000020747 Tmem94 ENSMUST00000134948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020747 Tmem94 ENSMUST00000239299 ENSMUSP00000159201 TRANSLATION protein_coding - - - 1371.0 0.0 0.0 5.9 0.0 16.0 -4,-5 0.6922 8 1.908 ALTERNATIVE:1 ENSMUSG00000020747 Tmem94 ENSMUST00000125918 ENSMUSP00000116666 TRANSLATION protein_coding start/stop - 3 299.0 0.0 0.0 0.0 0.0 2.0 -3,-6 0.0358 1 -2.0 MINOR ENSMUSG00000020747 Tmem94 ENSMUST00000103033 ENSMUSP00000099322 TRANSLATION protein_coding - CCDS25646.1 2 1360.0 0.0 0.0 8.7 0.0 16.0 -4,-5 1.0 9 3.0 PRINCIPAL:2 ENSMUSG00000037791 Phf12 ENSMUST00000153428 ENSMUSP00000119390 TRANSLATION protein_coding start - 1 278.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0011 1 -2.0 MINOR ENSMUSG00000037791 Phf12 ENSMUST00000131680 ENSMUSP00000127391 TRANSLATION nonsense_mediated_decay start - 5 50.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000037791 Phf12 ENSMUST00000108360 ENSMUSP00000103997 TRANSLATION protein_coding - - 1 788.0 15.0 2.275 0.0 132.5 0.0 -4,-5 0.0508 3 18.0 MINOR ENSMUSG00000037791 Phf12 ENSMUST00000123662 ENSMUSP00000131016 TRANSLATION nonsense_mediated_decay start - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000037791 Phf12 ENSMUST00000141620 - NO_TRANSLATION retained_intron ENSMUSG00000037791 Phf12 ENSMUST00000153747 ENSMUSP00000130741 TRANSLATION nonsense_mediated_decay start - 3 73.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000037791 Phf12 ENSMUST00000049167 ENSMUSP00000044990 TRANSLATION protein_coding - CCDS48855.1 1 1003.0 15.0 2.275 9.2 132.5 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000037791 Phf12 ENSMUST00000125079 - NO_TRANSLATION retained_intron ENSMUSG00000020346 Mgat1 ENSMUST00000129541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020346 Mgat1 ENSMUST00000167400 ENSMUSP00000126303 TRANSLATION protein_coding - CCDS24602.1 5 447.0 10.0 1.8 13.7 676.4 1.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020346 Mgat1 ENSMUST00000101293 ENSMUSP00000098851 TRANSLATION protein_coding - CCDS24602.1 1 447.0 10.0 1.8 13.7 676.4 1.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020346 Mgat1 ENSMUST00000152451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020346 Mgat1 ENSMUST00000135314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020346 Mgat1 ENSMUST00000129588 ENSMUSP00000114965 TRANSLATION protein_coding stop - 3 200.0 6.0 0.8 0.0 206.1 1.0 -1,-5 0.0015 3 -2.0 MINOR ENSMUSG00000020346 Mgat1 ENSMUST00000149406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020346 Mgat1 ENSMUST00000109194 ENSMUSP00000104817 TRANSLATION protein_coding - CCDS24602.1 1 447.0 10.0 1.8 13.7 676.4 1.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020346 Mgat1 ENSMUST00000156607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020346 Mgat1 ENSMUST00000148962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020346 Mgat1 ENSMUST00000135489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020346 Mgat1 ENSMUST00000155806 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020346 Mgat1 ENSMUST00000081794 ENSMUSP00000080484 TRANSLATION protein_coding - CCDS24602.1 1 447.0 10.0 1.8 13.7 676.4 1.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000025155 Dus1l ENSMUST00000106133 ENSMUSP00000101739 TRANSLATION protein_coding - - 5 482.0 18.0 4.76 4.0 247.5 0.0 -4,-2 0.63 5 19.197 MINOR ENSMUSG00000025155 Dus1l ENSMUST00000026151 ENSMUSP00000026151 TRANSLATION protein_coding - - 5 482.0 18.0 4.76 4.0 247.5 0.0 -4,-2 0.63 5 19.197 MINOR ENSMUSG00000025155 Dus1l ENSMUST00000106135 ENSMUSP00000101741 TRANSLATION protein_coding - - 5 482.0 18.0 4.76 4.0 247.5 0.0 -4,-2 0.63 5 19.197 MINOR ENSMUSG00000025155 Dus1l ENSMUST00000167023 ENSMUSP00000132516 TRANSLATION protein_coding - CCDS49012.1 1 475.0 18.0 4.76 8.4 247.8 0.0 -4,-2 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000025155 Dus1l ENSMUST00000146008 - NO_TRANSLATION retained_intron ENSMUSG00000025155 Dus1l ENSMUST00000125156 - NO_TRANSLATION retained_intron ENSMUSG00000025155 Dus1l ENSMUST00000142418 - NO_TRANSLATION retained_intron ENSMUSG00000025155 Dus1l ENSMUST00000129955 ENSMUSP00000116619 TRANSLATION protein_coding stop - 3 166.0 10.0 2.68 0.0 132.5 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000025155 Dus1l ENSMUST00000143139 ENSMUSP00000118773 TRANSLATION protein_coding stop - 3 193.0 10.0 3.18 0.0 154.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000059796 Eif4a1 ENSMUST00000128519 - NO_TRANSLATION retained_intron ENSMUSG00000059796 Eif4a1 ENSMUST00000139299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059796 Eif4a1 ENSMUST00000142214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059796 Eif4a1 ENSMUST00000140186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059796 Eif4a1 ENSMUST00000140310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059796 Eif4a1 ENSMUST00000127677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059796 Eif4a1 ENSMUST00000129295 - NO_TRANSLATION retained_intron ENSMUSG00000059796 Eif4a1 ENSMUST00000163666 ENSMUSP00000127034 TRANSLATION protein_coding - CCDS24904.1 1 406.0 12.0 9.248 36.9 256.8 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000059796 Eif4a1 ENSMUST00000145289 - NO_TRANSLATION retained_intron ENSMUSG00000059796 Eif4a1 ENSMUST00000142348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059796 Eif4a1 ENSMUST00000133067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059796 Eif4a1 ENSMUST00000123995 - NO_TRANSLATION retained_intron ENSMUSG00000059796 Eif4a1 ENSMUST00000102589 ENSMUSP00000099649 TRANSLATION nonsense_mediated_decay - - 1 50.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000054146 Krt15 ENSMUST00000148502 - NO_TRANSLATION retained_intron ENSMUSG00000054146 Krt15 ENSMUST00000107411 ENSMUSP00000103034 TRANSLATION protein_coding - CCDS25410.2 1 456.0 0.0 4.45 0.1 395.6 0.0 -4,-2 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000059552 Trp53 ENSMUST00000005371 ENSMUSP00000005371 TRANSLATION protein_coding - - 1 387.0 4.0 7.364 4.8 461.1 0.0 -4,-5 0.8608 1 14.0 ALTERNATIVE:1 ENSMUSG00000059552 Trp53 ENSMUST00000108657 ENSMUSP00000104297 TRANSLATION protein_coding - - 1 378.0 4.0 7.364 0.1 461.1 0.0 -4,-5 0.1675 1 12.0 MINOR ENSMUSG00000059552 Trp53 ENSMUST00000130540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059552 Trp53 ENSMUST00000147512 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059552 Trp53 ENSMUST00000171247 ENSMUSP00000127130 TRANSLATION protein_coding - CCDS48826.1 1 381.0 4.0 7.364 0.1 461.1 0.0 -4,-5 0.3375 1 12.0 MINOR ENSMUSG00000059552 Trp53 ENSMUST00000108658 ENSMUSP00000104298 TRANSLATION protein_coding - CCDS36193.1 1 390.0 4.0 7.364 4.8 461.1 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:4 ENSMUSG00000020289 Nprl3 ENSMUST00000124640 ENSMUSP00000122085 TRANSLATION nonsense_mediated_decay - - 1 69.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.0058 - -2.0 MINOR ENSMUSG00000020289 Nprl3 ENSMUST00000109390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020289 Nprl3 ENSMUST00000020530 ENSMUSP00000020530 TRANSLATION protein_coding - CCDS24521.1 1 569.0 0.0 10.5025 21.1 0.0 0.0 -4,-7 1.0 6 9.91 PRINCIPAL:1 ENSMUSG00000020289 Nprl3 ENSMUST00000132856 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020289 Nprl3 ENSMUST00000109389 ENSMUSP00000105016 TRANSLATION protein_coding - - 5 544.0 0.0 10.5475 2.8 0.0 0.0 -4,-7 0.2429 6 6.36 MINOR ENSMUSG00000020289 Nprl3 ENSMUST00000127657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020289 Nprl3 ENSMUST00000149526 ENSMUSP00000122231 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 2.33 0.0 0.0 0.0 -4,-6 0.001 2 -2.0 MINOR ENSMUSG00000020289 Nprl3 ENSMUST00000137950 ENSMUSP00000115594 TRANSLATION nonsense_mediated_decay - - 5 69.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.0058 - -2.0 MINOR ENSMUSG00000020289 Nprl3 ENSMUST00000129010 ENSMUSP00000123219 TRANSLATION protein_coding stop - 3 182.0 0.0 4.285 0.0 0.0 0.0 -4,-7 0.004 3 -2.0 MINOR ENSMUSG00000020289 Nprl3 ENSMUST00000123411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020289 Nprl3 ENSMUST00000148636 - NO_TRANSLATION retained_intron ENSMUSG00000020289 Nprl3 ENSMUST00000125256 - NO_TRANSLATION retained_intron ENSMUSG00000020289 Nprl3 ENSMUST00000129573 - NO_TRANSLATION retained_intron ENSMUSG00000020289 Nprl3 ENSMUST00000146890 - NO_TRANSLATION retained_intron ENSMUSG00000020289 Nprl3 ENSMUST00000136903 ENSMUSP00000114781 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0044 - -2.0 MINOR ENSMUSG00000020289 Nprl3 ENSMUST00000141859 ENSMUSP00000120341 TRANSLATION nonsense_mediated_decay - - 1 77.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.0058 - -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000148895 ENSMUSP00000134083 TRANSLATION protein_coding start - 5 209.0 0.0 5.83 0.0 66.7 0.0 -4,-6 0.0017 14 -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000173060 ENSMUSP00000133509 TRANSLATION nonsense_mediated_decay start - 5 100.0 0.0 3.08 0.0 0.0 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000173186 ENSMUSP00000133572 TRANSLATION nonsense_mediated_decay start - 5 67.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000173938 ENSMUSP00000133571 TRANSLATION protein_coding - CCDS25133.1 1 422.0 0.0 12.65 31.8 75.1 0.0 -4,-5 1.0 27 15.76 PRINCIPAL:1 ENSMUSG00000017428 Psmd11 ENSMUST00000172641 - NO_TRANSLATION retained_intron ENSMUSG00000017428 Psmd11 ENSMUST00000172615 ENSMUSP00000134129 TRANSLATION nonsense_mediated_decay - - 5 116.0 0.0 3.41 0.0 0.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000172847 ENSMUSP00000134136 TRANSLATION nonsense_mediated_decay start - 5 100.0 0.0 3.08 0.0 0.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000129500 ENSMUSP00000133452 TRANSLATION protein_coding start - 3 158.0 0.0 4.08 0.0 43.8 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000147898 - NO_TRANSLATION retained_intron ENSMUSG00000017428 Psmd11 ENSMUST00000172773 ENSMUSP00000134096 TRANSLATION nonsense_mediated_decay - - 5 113.0 0.0 3.575 0.0 0.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000173565 ENSMUSP00000134326 TRANSLATION protein_coding stop - 3 114.0 0.0 3.99 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000017572 ENSMUSP00000017572 TRANSLATION protein_coding - CCDS25133.1 1 422.0 0.0 12.65 31.8 75.1 0.0 -4,-5 1.0 27 15.76 PRINCIPAL:1 ENSMUSG00000017428 Psmd11 ENSMUST00000125591 ENSMUSP00000134320 TRANSLATION nonsense_mediated_decay start - 2 95.0 0.0 2.0 0.0 37.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000173797 ENSMUSP00000133739 TRANSLATION protein_coding start - 5 160.0 0.0 4.25 0.0 78.2 0.0 -4,-6 0.0017 10 -2.0 MINOR ENSMUSG00000017428 Psmd11 ENSMUST00000174743 ENSMUSP00000133442 TRANSLATION nonsense_mediated_decay start - 5 89.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000020788 Atp2a3 ENSMUST00000163326 ENSMUSP00000127036 TRANSLATION protein_coding - CCDS48842.1 5 1026.0 14.0 18.83 1.0 476.7 2.0 -4,-6 0.4262 23 18.0 MINOR ENSMUSG00000020788 Atp2a3 ENSMUST00000149493 - NO_TRANSLATION retained_intron ENSMUSG00000020788 Atp2a3 ENSMUST00000108485 ENSMUSP00000104125 TRANSLATION protein_coding - CCDS48843.1 1 999.0 14.0 18.83 16.7 476.7 2.0 -4,-6 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000020788 Atp2a3 ENSMUST00000021142 ENSMUSP00000021142 TRANSLATION protein_coding - CCDS24991.1 1 1038.0 14.0 18.83 5.2 476.7 2.0 -4,-6 0.4894 23 19.072 MINOR ENSMUSG00000020788 Atp2a3 ENSMUST00000135234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020788 Atp2a3 ENSMUST00000108486 ENSMUSP00000104126 TRANSLATION protein_coding - - 5 1020.0 14.0 18.33 0.0 476.7 2.0 -4,-6 0.1744 23 16.998 MINOR ENSMUSG00000020788 Atp2a3 ENSMUST00000108484 ENSMUSP00000104124 TRANSLATION protein_coding - - 5 981.0 14.0 18.33 0.0 476.7 2.0 -4,-6 0.144 22 16.998 MINOR ENSMUSG00000024414 Mrpl27 ENSMUST00000132813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024414 Mrpl27 ENSMUST00000129498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024414 Mrpl27 ENSMUST00000125148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024414 Mrpl27 ENSMUST00000025278 ENSMUSP00000025278 TRANSLATION protein_coding - CCDS25263.1 1 148.0 0.0 2.75 16.3 0.0 0.0 1,4 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000040919 4930505A04Rik ENSMUST00000041763 ENSMUSP00000045288 TRANSLATION protein_coding - CCDS48764.1 2 233.0 0.0 0.0 0.8 299.9 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000040919 4930505A04Rik ENSMUST00000152718 ENSMUSP00000117004 TRANSLATION nonsense_mediated_decay - - 2 105.0 0.0 0.0 0.0 46.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047564 Krtap3-1 ENSMUST00000055502 ENSMUSP00000053940 TRANSLATION protein_coding - CCDS48907.1 - 98.0 0.0 0.0 11.0 165.3 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000039850 Endov ENSMUST00000064513 ENSMUSP00000068849 TRANSLATION protein_coding - - 5 200.0 0.0 5.33 0.0 0.0 0.0 -4,-7 0.0125 1 1.284 MINOR ENSMUSG00000039850 Endov ENSMUST00000154370 ENSMUSP00000132873 TRANSLATION nonsense_mediated_decay - - 3 88.0 4.0 1.25 0.0 0.0 0.0 -4,-7 0.0161 - -2.0 MINOR ENSMUSG00000039850 Endov ENSMUST00000106244 ENSMUSP00000101851 TRANSLATION protein_coding - CCDS48999.1 1 338.0 0.0 7.688 0.0 0.0 0.0 -4,-5 0.9714 4 6.0 PRINCIPAL:1 ENSMUSG00000039850 Endov ENSMUST00000129327 ENSMUSP00000119599 TRANSLATION protein_coding - CCDS25718.1 5 255.0 0.0 5.33 0.0 0.0 0.0 -4,-7 0.1387 2 1.284 MINOR ENSMUSG00000039850 Endov ENSMUST00000132015 - NO_TRANSLATION retained_intron ENSMUSG00000039850 Endov ENSMUST00000106245 ENSMUSP00000132755 TRANSLATION protein_coding - CCDS25718.1 1 255.0 0.0 5.33 0.0 0.0 0.0 -4,-7 0.1387 2 1.284 MINOR ENSMUSG00000039850 Endov ENSMUST00000143817 ENSMUSP00000131108 TRANSLATION nonsense_mediated_decay - - 5 152.0 4.0 1.698 0.0 0.0 0.0 -4,-5 0.0052 1 -2.0 MINOR ENSMUSG00000039850 Endov ENSMUST00000140323 ENSMUSP00000118226 TRANSLATION protein_coding start/stop - 5 271.0 0.0 5.91 0.0 0.0 0.0 -4,-5 0.0137 3 -2.0 MINOR ENSMUSG00000039850 Endov ENSMUST00000153204 ENSMUSP00000128455 TRANSLATION nonsense_mediated_decay - - 5 88.0 4.0 1.25 0.0 0.0 0.0 -4,-7 0.0161 1 -2.0 MINOR ENSMUSG00000039850 Endov ENSMUST00000143670 - NO_TRANSLATION retained_intron ENSMUSG00000039850 Endov ENSMUST00000134873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017165 Gast ENSMUST00000017309 ENSMUSP00000017309 TRANSLATION protein_coding - CCDS25418.1 1 101.0 0.0 0.0 3.5 26.3 0.0 4,-1 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000078261 Gm11596 ENSMUST00000105058 ENSMUSP00000100679 TRANSLATION protein_coding - CCDS48918.1 - 205.0 0.0 0.0 0.1 77.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000020474 Polm ENSMUST00000143478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020474 Polm ENSMUST00000153987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020474 Polm ENSMUST00000124564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020474 Polm ENSMUST00000109837 ENSMUSP00000105463 TRANSLATION protein_coding - - 5 511.0 5.0 8.37 0.0 148.5 0.0 -4,0 0.02 2 9.962 MINOR ENSMUSG00000020474 Polm ENSMUST00000156913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020474 Polm ENSMUST00000020767 ENSMUSP00000020767 TRANSLATION protein_coding - CCDS24405.1 1 496.0 5.0 9.75 3.5 219.8 0.0 -4,0 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000018599 Mief2 ENSMUST00000146159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018599 Mief2 ENSMUST00000018743 ENSMUSP00000018743 TRANSLATION protein_coding - CCDS24796.1 1 454.0 0.0 1.0 7.3 38.4 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000018599 Mief2 ENSMUST00000154890 - NO_TRANSLATION retained_intron ENSMUSG00000052373 Mpp3 ENSMUST00000141403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052373 Mpp3 ENSMUST00000100400 ENSMUSP00000097969 TRANSLATION protein_coding - CCDS36338.1 1 585.0 15.0 8.052 17.6 302.4 0.0 -4,-6 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000052373 Mpp3 ENSMUST00000132094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052373 Mpp3 ENSMUST00000062801 ENSMUSP00000055469 TRANSLATION protein_coding - CCDS36338.1 1 585.0 15.0 8.052 17.6 302.4 0.0 -4,-6 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000052373 Mpp3 ENSMUST00000127053 - NO_TRANSLATION retained_intron ENSMUSG00000052373 Mpp3 ENSMUST00000155751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052373 Mpp3 ENSMUST00000107168 ENSMUSP00000102786 TRANSLATION protein_coding - CCDS36338.1 5 585.0 15.0 8.052 17.6 302.4 0.0 -4,-6 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000052373 Mpp3 ENSMUST00000107167 ENSMUSP00000102785 TRANSLATION protein_coding - - 1 231.0 0.0 3.882 0.0 128.4 0.0 -4,-6 0.0 6 0.0 MINOR ENSMUSG00000052373 Mpp3 ENSMUST00000147838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000080712 H2bc26-ps ENSMUST00000117558 ENSMUSP00001091675 TRANSLATION protein_coding - - - 126.0 0.0 1.0 12.5 90.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020361 Hspa4 ENSMUST00000020630 ENSMUSP00000020630 TRANSLATION protein_coding - CCDS24674.1 1 842.0 21.0 13.9 25.5 722.4 0.0 -4,-6 1.0 43 22.0 PRINCIPAL:1 ENSMUSG00000020361 Hspa4 ENSMUST00000151854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020361 Hspa4 ENSMUST00000139322 - NO_TRANSLATION retained_intron ENSMUSG00000018882 Mrpl45 ENSMUST00000132168 ENSMUSP00000116306 TRANSLATION protein_coding start - 2 129.0 0.0 1.8 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000018882 Mrpl45 ENSMUST00000019026 ENSMUSP00000019026 TRANSLATION protein_coding - CCDS25318.1 1 306.0 0.0 6.05 8.4 109.7 0.0 -4,0 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000020375 Rufy1 ENSMUST00000135508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020375 Rufy1 ENSMUST00000020643 ENSMUSP00000020643 TRANSLATION protein_coding - CCDS24635.1 1 712.0 8.0 6.68 0.4 175.7 0.0 -4,-6 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000020375 Rufy1 ENSMUST00000129304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010080 Epn3 ENSMUST00000150526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010080 Epn3 ENSMUST00000127305 ENSMUSP00000121390 TRANSLATION protein_coding - CCDS25257.1 1 636.0 9.0 1.0 3.3 198.8 0.0 -4,-7 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000010080 Epn3 ENSMUST00000010224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010080 Epn3 ENSMUST00000142992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020773 Trim47 ENSMUST00000134691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020773 Trim47 ENSMUST00000021120 ENSMUSP00000021120 TRANSLATION protein_coding - CCDS56823.1 1 642.0 8.0 1.75 4.3 108.3 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:4 ENSMUSG00000020773 Trim47 ENSMUST00000141531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020773 Trim47 ENSMUST00000127235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020773 Trim47 ENSMUST00000106441 ENSMUSP00000102049 TRANSLATION protein_coding - CCDS56822.1 1 641.0 8.0 1.63 4.3 108.3 0.0 -4,-5 0.8319 14 15.586 ALTERNATIVE:2 ENSMUSG00000020773 Trim47 ENSMUST00000133039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020773 Trim47 ENSMUST00000149957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101605 Ace3 ENSMUST00000190995 ENSMUSP00000140827 TRANSLATION protein_coding - CCDS59570.1 1 737.0 4.0 12.0 0.1 807.5 0.0 0,-3 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000040610 Tlx3 ENSMUST00000037746 ENSMUSP00000047457 TRANSLATION protein_coding - CCDS24533.1 1 291.0 0.0 1.8 9.2 72.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000009090 Ap1b1 ENSMUST00000145704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009090 Ap1b1 ENSMUST00000137292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009090 Ap1b1 ENSMUST00000133007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009090 Ap1b1 ENSMUST00000144426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009090 Ap1b1 ENSMUST00000101613 ENSMUSP00000099134 TRANSLATION protein_coding - - 5 923.0 0.0 16.75 0.0 577.1 0.0 -4,-5 0.0431 21 4.5 MINOR ENSMUSG00000009090 Ap1b1 ENSMUST00000009234 ENSMUSP00000009234 TRANSLATION protein_coding - CCDS36100.1 1 943.0 0.0 17.5 19.5 706.4 0.0 -4,-5 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000009090 Ap1b1 ENSMUST00000109897 ENSMUSP00000105523 TRANSLATION protein_coding - - 5 916.0 0.0 16.75 0.0 577.1 0.0 -4,-5 0.043 21 4.5 MINOR ENSMUSG00000009090 Ap1b1 ENSMUST00000142325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009090 Ap1b1 ENSMUST00000133014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038756 Ttll6 ENSMUST00000167258 ENSMUSP00000127778 TRANSLATION protein_coding - CCDS25290.2 5 822.0 21.0 8.58 0.0 294.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000038756 Ttll6 ENSMUST00000107680 ENSMUSP00000103307 TRANSLATION protein_coding - - 5 718.0 21.0 7.08 0.0 294.5 0.0 -4,-6 0.0616 - 15.0 MINOR ENSMUSG00000057054 Inca1 ENSMUST00000126114 ENSMUSP00000118761 TRANSLATION protein_coding - CCDS24964.1 1 231.0 0.0 0.7 3.3 290.5 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057054 Inca1 ENSMUST00000108542 ENSMUSP00000104182 TRANSLATION protein_coding - CCDS24964.1 1 231.0 0.0 0.7 3.3 290.5 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057054 Inca1 ENSMUST00000108543 ENSMUSP00000104183 TRANSLATION protein_coding - CCDS56789.1 1 196.0 0.0 0.7 2.2 250.6 0.0 -4,-5 0.3936 - 10.128 MINOR ENSMUSG00000057054 Inca1 ENSMUST00000108541 ENSMUSP00000104181 TRANSLATION protein_coding - CCDS24964.1 1 231.0 0.0 0.7 3.3 290.5 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057054 Inca1 ENSMUST00000073625 ENSMUSP00000073311 TRANSLATION protein_coding - CCDS24964.1 1 231.0 0.0 0.7 3.3 290.5 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000040767 Snrnp25 ENSMUST00000149043 ENSMUSP00000119306 TRANSLATION protein_coding stop - 3 96.0 0.0 3.0 0.0 0.0 0.0 -4,-7 0.0048 - -2.0 MINOR ENSMUSG00000040767 Snrnp25 ENSMUST00000155736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040767 Snrnp25 ENSMUST00000249622 ENSMUSP00000159831 TRANSLATION protein_coding - - - 160.0 0.0 4.16 0.0 0.0 0.0 -4,-5 0.029 1 6.0 ALTERNATIVE:2 ENSMUSG00000040767 Snrnp25 ENSMUST00000125837 - NO_TRANSLATION retained_intron ENSMUSG00000040767 Snrnp25 ENSMUST00000121182 ENSMUSP00000112483 TRANSLATION protein_coding - - 3 119.0 0.0 2.25 0.0 0.0 0.0 -4,-7 0.0405 1 2.178 MINOR ENSMUSG00000040767 Snrnp25 ENSMUST00000039601 ENSMUSP00000046654 TRANSLATION protein_coding - CCDS24518.1 1 123.0 0.0 3.66 7.6 0.0 0.0 -4,-7 1.0 1 6.998 PRINCIPAL:2 ENSMUSG00000018924 Alox15 ENSMUST00000130000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018924 Alox15 ENSMUST00000019068 ENSMUSP00000019068 TRANSLATION protein_coding - CCDS24944.1 1 663.0 4.0 13.5 10.1 82.1 0.0 -4,-5 1.0 20 19.0 PRINCIPAL:1 ENSMUSG00000060600 Eno3 ENSMUST00000134087 ENSMUSP00000121640 TRANSLATION protein_coding stop - 5 80.0 1.0 2.41 0.0 112.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000060600 Eno3 ENSMUST00000179738 - NO_TRANSLATION retained_intron ENSMUSG00000060600 Eno3 ENSMUST00000126241 ENSMUSP00000123688 TRANSLATION protein_coding stop - 2 70.0 1.0 2.08 0.0 104.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000060600 Eno3 ENSMUST00000179055 ENSMUSP00000137559 TRANSLATION protein_coding start/stop - 3 190.0 5.0 4.75 0.0 326.3 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000060600 Eno3 ENSMUST00000157027 ENSMUSP00000115726 TRANSLATION protein_coding stop - 2 196.0 1.0 5.49 0.0 294.4 0.0 -4,-5 0.0007 11 -2.0 MINOR ENSMUSG00000060600 Eno3 ENSMUST00000072841 ENSMUSP00000072620 TRANSLATION protein_coding - CCDS24961.1 1 434.0 6.0 11.66 36.9 713.8 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000060600 Eno3 ENSMUST00000108548 ENSMUSP00000104188 TRANSLATION protein_coding - CCDS24961.1 5 434.0 6.0 11.66 36.9 713.8 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000060600 Eno3 ENSMUST00000170716 ENSMUSP00000128714 TRANSLATION protein_coding - CCDS24961.1 1 434.0 6.0 11.66 36.9 713.8 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000072708 Or1e22 ENSMUST00000119863 ENSMUSP00000113846 TRANSLATION protein_coding - CCDS25011.1 3 311.0 0.0 1.0 7.6 192.1 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000072708 Or1e22 ENSMUST00000214623 ENSMUSP00000148899 TRANSLATION protein_coding - CCDS25011.1 5 311.0 0.0 1.0 7.6 192.1 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000072708 Or1e22 ENSMUST00000078358 ENSMUSP00000077467 TRANSLATION protein_coding - CCDS25011.1 - 311.0 0.0 1.0 7.6 192.1 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000072708 Or1e22 ENSMUST00000215358 ENSMUSP00000149355 TRANSLATION protein_coding - CCDS25011.1 5 311.0 0.0 1.0 7.6 192.1 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000055670 Zzef1 ENSMUST00000125122 - NO_TRANSLATION retained_intron ENSMUSG00000055670 Zzef1 ENSMUST00000150551 - NO_TRANSLATION retained_intron ENSMUSG00000055670 Zzef1 ENSMUST00000069395 ENSMUSP00000068790 TRANSLATION protein_coding - CCDS36218.1 5 2891.0 4.0 1.17 0.0 115.5 0.0 -4,-5 0.9144 60 12.0 ALTERNATIVE:2 ENSMUSG00000055670 Zzef1 ENSMUST00000152063 - NO_TRANSLATION retained_intron ENSMUSG00000055670 Zzef1 ENSMUST00000152481 - NO_TRANSLATION retained_intron ENSMUSG00000055670 Zzef1 ENSMUST00000207107 ENSMUSP00000147028 TRANSLATION protein_coding - - 5 2953.0 4.0 1.17 1.0 115.5 0.0 -4,-5 1.0 61 12.0 PRINCIPAL:3 ENSMUSG00000055670 Zzef1 ENSMUST00000145393 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055670 Zzef1 ENSMUST00000172220 ENSMUSP00000130515 TRANSLATION protein_coding - - 5 2924.0 4.0 1.17 0.0 115.5 0.0 -4,-5 0.5569 60 12.0 ALTERNATIVE:2 ENSMUSG00000053580 Tanc2 ENSMUST00000147975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053580 Tanc2 ENSMUST00000146162 ENSMUSP00000123674 TRANSLATION protein_coding start - 5 1137.0 0.0 5.8 0.0 192.1 0.0 -4,-7 0.2056 18 -2.0 MINOR ENSMUSG00000053580 Tanc2 ENSMUST00000089485 ENSMUSP00000086912 TRANSLATION protein_coding start - 1 370.0 0.0 4.7 0.0 116.4 0.0 -4,-5 0.0002 9 -2.0 MINOR ENSMUSG00000053580 Tanc2 ENSMUST00000167695 ENSMUSP00000126201 TRANSLATION protein_coding start - 5 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0217 - -2.0 MINOR ENSMUSG00000053580 Tanc2 ENSMUST00000207807 ENSMUSP00000147168 TRANSLATION protein_coding start/stop - 5 152.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053580 Tanc2 ENSMUST00000100330 ENSMUSP00000097904 TRANSLATION protein_coding - CCDS36357.1 5 1994.0 16.0 5.8 6.5 187.6 0.0 -4,-2 1.0 37 19.73 PRINCIPAL:1 ENSMUSG00000053580 Tanc2 ENSMUST00000168598 ENSMUSP00000129877 TRANSLATION protein_coding stop - 3 117.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000053580 Tanc2 ENSMUST00000124367 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020368 Canx ENSMUST00000146979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020368 Canx ENSMUST00000020637 ENSMUSP00000020637 TRANSLATION protein_coding - CCDS24633.1 1 591.0 4.0 8.75 10.3 558.1 1.0 4,-1 1.0 27 19.0 PRINCIPAL:1 ENSMUSG00000020368 Canx ENSMUST00000153068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020368 Canx ENSMUST00000155801 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020368 Canx ENSMUST00000179865 ENSMUSP00000137440 TRANSLATION protein_coding - CCDS24633.1 1 591.0 4.0 8.75 10.3 558.1 1.0 4,-1 1.0 27 19.0 PRINCIPAL:1 ENSMUSG00000089669 Tnfsf13 ENSMUST00000108648 ENSMUSP00000104288 TRANSLATION protein_coding - - 5 224.0 0.0 3.0 0.4 43.6 1.0 -2,-3 0.017 - 5.202 ALTERNATIVE:2 ENSMUSG00000089669 Tnfsf13 ENSMUST00000018896 ENSMUSP00000018896 TRANSLATION protein_coding - CCDS48827.1 1 240.0 0.0 3.4 0.4 43.6 1.0 -2,-3 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000018474 Chd3 ENSMUST00000128981 ENSMUSP00000122137 TRANSLATION protein_coding start/stop - 5 1886.0 16.0 21.828 0.0 1104.7 0.0 -4,-5 0.5056 11 -2.0 MINOR ENSMUSG00000018474 Chd3 ENSMUST00000122992 - NO_TRANSLATION retained_intron ENSMUSG00000018474 Chd3 ENSMUST00000151436 ENSMUSP00000118172 TRANSLATION protein_coding start/stop - 5 197.0 0.0 4.18 0.0 85.2 0.0 -4,-5 0.0002 1 -2.0 MINOR ENSMUSG00000018474 Chd3 ENSMUST00000144332 - NO_TRANSLATION retained_intron ENSMUSG00000018474 Chd3 ENSMUST00000108661 ENSMUSP00000104301 TRANSLATION protein_coding - CCDS48825.2 5 2055.0 16.0 21.828 0.0 1104.7 0.0 -4,-5 0.7487 12 14.0 ALTERNATIVE:2 ENSMUSG00000018474 Chd3 ENSMUST00000135909 - NO_TRANSLATION retained_intron ENSMUSG00000018474 Chd3 ENSMUST00000092971 ENSMUSP00000090649 TRANSLATION protein_coding - - 5 2021.0 16.0 21.828 0.0 1104.7 0.0 -4,-5 1.0 11 14.0 PRINCIPAL:2 ENSMUSG00000018474 Chd3 ENSMUST00000238797 ENSMUSP00000159107 TRANSLATION protein_coding start - - 385.0 0.0 3.0 0.0 216.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018474 Chd3 ENSMUST00000146930 - NO_TRANSLATION retained_intron ENSMUSG00000018474 Chd3 ENSMUST00000154046 ENSMUSP00000121192 TRANSLATION protein_coding start/stop - 2 151.0 9.0 1.948 0.0 45.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000018474 Chd3 ENSMUST00000144701 ENSMUSP00000114520 TRANSLATION protein_coding start/stop - 3 143.0 9.0 1.75 0.0 45.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000004748 Mtfp1 ENSMUST00000123607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004748 Mtfp1 ENSMUST00000004868 ENSMUSP00000004868 TRANSLATION protein_coding - CCDS24376.1 1 166.0 0.0 2.75 8.8 0.0 0.0 -4,-5 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000040430 Pitpnc1 ENSMUST00000146680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040430 Pitpnc1 ENSMUST00000040380 ENSMUSP00000046337 TRANSLATION protein_coding - - 1 309.0 0.0 6.18 4.7 319.8 0.0 -4,-5 0.0971 8 7.762 MINOR ENSMUSG00000040430 Pitpnc1 ENSMUST00000103064 ENSMUSP00000099353 TRANSLATION protein_coding - CCDS25567.1 1 268.0 0.0 7.01 21.8 374.6 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000040430 Pitpnc1 ENSMUST00000134763 ENSMUSP00000122609 TRANSLATION protein_coding stop - 5 195.0 0.0 5.25 0.0 271.7 0.0 -4,-5 0.0021 5 -2.0 MINOR ENSMUSG00000025170 Rab40b ENSMUST00000106107 ENSMUSP00000101713 TRANSLATION protein_coding - - 1 278.0 15.0 3.65 33.8 166.7 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000025170 Rab40b ENSMUST00000124639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025170 Rab40b ENSMUST00000149948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025170 Rab40b ENSMUST00000135290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017837 Nkiras2 ENSMUST00000107376 ENSMUSP00000102999 TRANSLATION protein_coding - CCDS25429.1 5 191.0 22.0 4.0 36.9 91.0 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000017837 Nkiras2 ENSMUST00000142993 ENSMUSP00000114456 TRANSLATION protein_coding stop - 1 153.0 22.0 3.0 0.0 85.6 0.0 -4,-5 0.0041 6 -2.0 MINOR ENSMUSG00000017837 Nkiras2 ENSMUST00000127547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017837 Nkiras2 ENSMUST00000017981 ENSMUSP00000017981 TRANSLATION protein_coding - CCDS25429.1 1 191.0 22.0 4.0 36.9 91.0 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000017837 Nkiras2 ENSMUST00000155840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017837 Nkiras2 ENSMUST00000051947 ENSMUSP00000059559 TRANSLATION protein_coding - CCDS25429.1 1 191.0 22.0 4.0 36.9 91.0 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000009350 Mpo ENSMUST00000121303 ENSMUSP00000112837 TRANSLATION protein_coding - CCDS25217.1 1 718.0 24.0 11.74 4.3 604.4 0.0 1,-2 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000009350 Mpo ENSMUST00000107930 ENSMUSP00000103563 TRANSLATION nonsense_mediated_decay start - 2 99.0 0.0 2.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000009350 Mpo ENSMUST00000020779 ENSMUSP00000020779 TRANSLATION protein_coding - CCDS25217.1 1 718.0 24.0 11.74 4.3 604.4 0.0 1,-2 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000009350 Mpo ENSMUST00000146650 ENSMUSP00000128484 TRANSLATION protein_coding start - 2 138.0 0.0 2.0 0.0 110.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000009350 Mpo ENSMUST00000143021 ENSMUSP00000123371 TRANSLATION protein_coding stop - 5 166.0 0.0 3.33 0.0 0.0 0.0 1,-2 0.0037 1 -2.0 MINOR ENSMUSG00000009350 Mpo ENSMUST00000167903 - NO_TRANSLATION retained_intron ENSMUSG00000037124 Trim58 ENSMUST00000075084 ENSMUSP00000074594 TRANSLATION protein_coding - CCDS24738.1 1 485.0 16.0 2.898 2.5 218.1 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000041797 Abca9 ENSMUST00000126499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041797 Abca9 ENSMUST00000044850 ENSMUSP00000036338 TRANSLATION protein_coding - CCDS25589.1 1 1623.0 20.0 9.447 6.9 339.8 0.0 -4,-1 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000057003 Myh4 ENSMUST00000170942 ENSMUSP00000127514 TRANSLATION protein_coding - CCDS24856.1 1 1939.0 16.0 36.63 24.9 1539.2 0.0 -4,-5 1.0 38 22.0 PRINCIPAL:1 ENSMUSG00000057003 Myh4 ENSMUST00000018632 ENSMUSP00000018632 TRANSLATION protein_coding - CCDS24856.1 5 1939.0 16.0 36.63 24.9 1539.2 0.0 -4,-5 1.0 38 22.0 PRINCIPAL:1 ENSMUSG00000037533 Rapgef6 ENSMUST00000149372 - NO_TRANSLATION retained_intron ENSMUSG00000037533 Rapgef6 ENSMUST00000218995 ENSMUSP00000151509 TRANSLATION protein_coding stop - 1 599.0 0.0 5.482 0.0 128.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000037533 Rapgef6 ENSMUST00000155132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037533 Rapgef6 ENSMUST00000101206 ENSMUSP00000098766 TRANSLATION protein_coding - - 5 1609.0 0.0 7.582 8.4 351.9 0.0 -4,-6 0.7824 17 10.643 ALTERNATIVE:1 ENSMUSG00000037533 Rapgef6 ENSMUST00000108894 ENSMUSP00000104522 TRANSLATION protein_coding - - 5 1131.0 0.0 7.082 0.0 351.9 0.0 -4,-7 0.1394 11 6.998 MINOR ENSMUSG00000037533 Rapgef6 ENSMUST00000207429 ENSMUSP00000147135 TRANSLATION protein_coding - CCDS83809.1 1 1606.0 0.0 7.582 2.1 351.9 0.0 -4,-6 0.6685 17 8.393 MINOR ENSMUSG00000037533 Rapgef6 ENSMUST00000239168 ENSMUSP00000159106 TRANSLATION protein_coding - - - 1267.0 0.0 5.332 0.0 316.7 0.0 -3,-6 0.023 16 2.9 MINOR ENSMUSG00000037533 Rapgef6 ENSMUST00000139360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037533 Rapgef6 ENSMUST00000108895 ENSMUSP00000104523 TRANSLATION protein_coding - - 1 544.0 0.0 4.35 0.0 81.8 0.0 -4,-6 0.0 1 0.4 MINOR ENSMUSG00000037533 Rapgef6 ENSMUST00000136494 ENSMUSP00000114574 TRANSLATION protein_coding start - 3 111.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037533 Rapgef6 ENSMUST00000102743 ENSMUSP00000099804 TRANSLATION protein_coding - CCDS24699.1 5 1601.0 0.0 7.582 9.4 351.9 0.0 -4,-6 1.0 17 11.0 PRINCIPAL:4 ENSMUSG00000037533 Rapgef6 ENSMUST00000220269 - NO_TRANSLATION retained_intron ENSMUSG00000037533 Rapgef6 ENSMUST00000094536 ENSMUSP00000092114 TRANSLATION protein_coding - - 5 1123.0 0.0 7.082 0.0 351.9 0.0 -4,-7 0.1394 11 6.998 MINOR ENSMUSG00000020805 Slc13a5 ENSMUST00000137701 ENSMUSP00000119417 TRANSLATION protein_coding - - 5 526.0 0.0 8.0575 6.1 331.7 17.0 -1,-4 0.3802 4 7.713 MINOR ENSMUSG00000020805 Slc13a5 ENSMUST00000140167 ENSMUSP00000119822 TRANSLATION protein_coding stop - 5 168.0 0.0 2.83 0.0 88.3 5.0 -1,-4 0.0037 - -2.0 MINOR ENSMUSG00000020805 Slc13a5 ENSMUST00000208056 ENSMUSP00000146922 TRANSLATION protein_coding - - 5 555.0 0.0 8.5575 3.3 361.7 17.0 -1,-4 0.1781 4 9.576 MINOR ENSMUSG00000020805 Slc13a5 ENSMUST00000208912 ENSMUSP00000146762 TRANSLATION protein_coding - - 5 529.0 0.0 7.7275 4.3 353.6 15.0 -1,-4 0.2952 4 7.767 MINOR ENSMUSG00000020805 Slc13a5 ENSMUST00000021161 ENSMUSP00000021161 TRANSLATION protein_coding - CCDS24983.1 1 572.0 0.0 9.0575 10.0 398.2 17.0 -1,-4 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020805 Slc13a5 ENSMUST00000207990 - NO_TRANSLATION retained_intron ENSMUSG00000043099 Hic1 ENSMUST00000055619 ENSMUSP00000053483 TRANSLATION protein_coding - - 1 714.0 20.0 0.0 5.9 169.1 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:4 ENSMUSG00000043099 Hic1 ENSMUST00000131720 ENSMUSP00001091661 TRANSLATION protein_coding - - 2 733.0 20.0 0.0 5.3 169.1 0.0 -4,-5 0.8728 7 9.756 ALTERNATIVE:1 ENSMUSG00000001588 Acap1 ENSMUST00000108622 - NO_TRANSLATION retained_intron ENSMUSG00000001588 Acap1 ENSMUST00000127238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001588 Acap1 ENSMUST00000001631 ENSMUSP00000001631 TRANSLATION protein_coding - CCDS24919.1 1 740.0 4.0 17.09 10.3 442.4 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000001588 Acap1 ENSMUST00000148037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069825 Gm49340 ENSMUST00000117445 ENSMUSP00000113799 TRANSLATION protein_coding,RT - - 2 311.0 0.0 2.5 0.0 0.0 0.0 -4,-2 0.6868 - -2.0 PRINCIPAL:1 ENSMUSG00000018841 Rad51d ENSMUST00000146053 ENSMUSP00000117401 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000018841 Rad51d ENSMUST00000135963 ENSMUSP00000122477 TRANSLATION nonsense_mediated_decay - - 1 233.0 8.0 4.23 0.0 65.7 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000018841 Rad51d ENSMUST00000100718 ENSMUSP00000098284 TRANSLATION nonsense_mediated_decay - - 1 109.0 0.0 2.5 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000018841 Rad51d ENSMUST00000021033 ENSMUSP00000021033 TRANSLATION protein_coding - CCDS70268.1 1 275.0 8.0 4.562 1.2 55.9 0.0 -4,-7 0.0138 3 13.917 MINOR ENSMUSG00000018841 Rad51d ENSMUST00000018985 ENSMUSP00000018985 TRANSLATION protein_coding - CCDS36250.1 1 329.0 8.0 5.437 12.8 92.7 0.0 -4,-7 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000018841 Rad51d ENSMUST00000092844 ENSMUSP00000090520 TRANSLATION protein_coding - CCDS70267.1 1 284.0 7.0 5.237 1.1 58.3 0.0 -4,-7 0.0833 5 14.646 MINOR ENSMUSG00000020941 Map3k14 ENSMUST00000152677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020941 Map3k14 ENSMUST00000146163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020941 Map3k14 ENSMUST00000021324 ENSMUSP00000021324 TRANSLATION protein_coding - CCDS25516.1 1 942.0 19.0 6.666 3.7 142.5 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000020941 Map3k14 ENSMUST00000152300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020719 Ddx5 ENSMUST00000123339 ENSMUSP00000121733 TRANSLATION protein_coding stop - 5 167.0 13.0 3.55 0.0 36.0 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000020719 Ddx5 ENSMUST00000130172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020719 Ddx5 ENSMUST00000106779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020719 Ddx5 ENSMUST00000106778 - NO_TRANSLATION retained_intron ENSMUSG00000020719 Ddx5 ENSMUST00000127481 ENSMUSP00000138184 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000020719 Ddx5 ENSMUST00000021062 ENSMUSP00000021062 TRANSLATION protein_coding - CCDS25562.1 1 615.0 20.0 10.65 12.5 388.3 0.0 -4,-6 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000020719 Ddx5 ENSMUST00000129585 ENSMUSP00000116859 TRANSLATION protein_coding stop - 3 182.0 14.0 4.05 0.0 58.4 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000020719 Ddx5 ENSMUST00000133426 ENSMUSP00000138237 TRANSLATION nonsense_mediated_decay - - 1 406.0 20.0 9.55 0.0 216.8 0.0 -4,-6 0.0306 15 -2.0 MINOR ENSMUSG00000020719 Ddx5 ENSMUST00000151741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000263 Glra1 ENSMUST00000075603 ENSMUSP00000075032 TRANSLATION protein_coding - CCDS70190.1 1 457.0 0.0 6.665 22.5 298.3 3.0 -3,-5 1.0 4 12.0 PRINCIPAL:4 ENSMUSG00000000263 Glra1 ENSMUST00000102716 ENSMUSP00000099777 TRANSLATION protein_coding - CCDS24715.1 1 449.0 0.0 6.5 22.3 296.3 3.0 -3,-5 0.9704 4 11.634 ALTERNATIVE:1 ENSMUSG00000000263 Glra1 ENSMUST00000108853 ENSMUSP00000104481 TRANSLATION protein_coding - - 5 366.0 0.0 4.75 4.2 260.0 3.0 -4,-5 0.0904 3 2.768 MINOR ENSMUSG00000025144 Cenpx ENSMUST00000026137 ENSMUSP00000026137 TRANSLATION protein_coding - CCDS83948.1 2 107.0 0.0 1.33 0.0 55.9 0.0 -4,-2 0.0262 1 7.764 MINOR ENSMUSG00000025144 Cenpx ENSMUST00000128543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025144 Cenpx ENSMUST00000106155 ENSMUSP00000101761 TRANSLATION protein_coding - - 1 121.0 0.0 0.33 0.0 0.0 0.0 -4,-1 0.0 - 0.954 MINOR ENSMUSG00000025144 Cenpx ENSMUST00000055424 ENSMUSP00000050335 TRANSLATION protein_coding - CCDS49009.1 1 78.0 0.0 2.08 10.3 85.4 0.0 -4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000025144 Cenpx ENSMUST00000106154 ENSMUSP00000101760 TRANSLATION protein_coding - CCDS83947.1 2 114.0 0.0 1.75 0.0 82.6 0.0 -4,-6 0.0569 1 10.848 MINOR ENSMUSG00000020283 Pex13 ENSMUST00000130811 ENSMUSP00000115020 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020283 Pex13 ENSMUST00000124839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020283 Pex13 ENSMUST00000146533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020283 Pex13 ENSMUST00000020523 ENSMUSP00000020523 TRANSLATION protein_coding - CCDS24478.1 1 405.0 0.0 2.13 8.4 197.6 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000020859 Spag9 ENSMUST00000127066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020859 Spag9 ENSMUST00000132079 ENSMUSP00000118850 TRANSLATION protein_coding stop - 5 706.0 0.0 0.0 0.0 0.0 1.0 -1,-5 0.0085 12 -2.0 MINOR ENSMUSG00000020859 Spag9 ENSMUST00000132772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020859 Spag9 ENSMUST00000075695 ENSMUSP00000075115 TRANSLATION protein_coding - CCDS56797.1 1 1168.0 0.0 1.83 7.1 101.2 1.0 -1,-5 0.6607 27 8.409 MINOR ENSMUSG00000020859 Spag9 ENSMUST00000156019 ENSMUSP00000115864 TRANSLATION protein_coding start/stop - 5 775.0 0.0 1.83 0.0 101.5 0.0 -4,-5 0.0251 18 -2.0 MINOR ENSMUSG00000020859 Spag9 ENSMUST00000103168 ENSMUSP00000099457 TRANSLATION protein_coding - CCDS25249.1 1 1164.0 0.0 1.83 7.1 101.5 1.0 -1,-5 0.6607 27 8.409 MINOR ENSMUSG00000020859 Spag9 ENSMUST00000138154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020859 Spag9 ENSMUST00000092777 ENSMUSP00000090452 TRANSLATION protein_coding - CCDS36282.1 1 1169.0 0.0 1.83 7.1 102.5 1.0 -1,-5 0.6588 27 8.409 MINOR ENSMUSG00000020859 Spag9 ENSMUST00000041956 ENSMUSP00000042271 TRANSLATION protein_coding - CCDS25248.1 1 1307.0 0.0 1.83 8.6 297.1 0.0 -4,-5 1.0 31 15.0 PRINCIPAL:1 ENSMUSG00000020859 Spag9 ENSMUST00000153076 ENSMUSP00000117502 TRANSLATION protein_coding start - 1 901.0 0.0 1.0 0.0 36.8 0.0 -4,-5 0.0079 21 -2.0 MINOR ENSMUSG00000020859 Spag9 ENSMUST00000132605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020303 Stc2 ENSMUST00000149467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020303 Stc2 ENSMUST00000139991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020303 Stc2 ENSMUST00000134199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020303 Stc2 ENSMUST00000020546 ENSMUSP00000020546 TRANSLATION protein_coding - CCDS24512.1 1 296.0 0.0 2.8 10.1 304.9 0.0 3,-1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000020303 Stc2 ENSMUST00000152094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020273 Papolg ENSMUST00000020513 ENSMUSP00000020513 TRANSLATION protein_coding - CCDS24481.1 1 739.0 4.0 12.264 8.4 507.2 1.0 -4,-5 1.0 10 18.994 PRINCIPAL:1 ENSMUSG00000020273 Papolg ENSMUST00000102863 ENSMUSP00000099927 TRANSLATION protein_coding - - 1 429.0 4.0 11.0 0.0 507.3 1.0 -4,-5 0.0594 4 13.474 MINOR ENSMUSG00000020273 Papolg ENSMUST00000150711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020273 Papolg ENSMUST00000145013 ENSMUSP00000115518 TRANSLATION protein_coding start - 1 256.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020712 Tcam1 ENSMUST00000044462 ENSMUSP00000044757 TRANSLATION protein_coding - CCDS48959.1 1 548.0 0.0 3.4 4.4 95.3 0.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000020712 Tcam1 ENSMUST00000142472 ENSMUSP00000115544 TRANSLATION nonsense_mediated_decay - - 1 399.0 0.0 2.92 0.0 95.3 0.0 3,-2 0.0613 1 -2.0 MINOR ENSMUSG00000014609 Chrne ENSMUST00000134836 - NO_TRANSLATION retained_intron ENSMUSG00000014609 Chrne ENSMUST00000102556 ENSMUSP00000099616 TRANSLATION protein_coding - CCDS24956.1 1 493.0 0.0 7.6 0.0 405.8 3.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000014609 Chrne ENSMUST00000014753 ENSMUSP00000014753 TRANSLATION protein_coding - - 5 494.0 0.0 7.35 0.0 403.4 3.0 4,-1 0.3705 - 7.502 ALTERNATIVE:2 ENSMUSG00000014609 Chrne ENSMUST00000135920 - NO_TRANSLATION retained_intron ENSMUSG00000025142 Aspscr1 ENSMUST00000166838 ENSMUSP00000127202 TRANSLATION nonsense_mediated_decay start - 5 183.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000106160 ENSMUSP00000101766 TRANSLATION protein_coding - CCDS49008.1 1 452.0 0.0 5.21 0.0 0.0 0.0 -4,-6 0.0117 9 0.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000168714 ENSMUSP00000129462 TRANSLATION protein_coding stop - 5 107.0 0.0 1.83 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000153346 ENSMUSP00000120669 TRANSLATION protein_coding stop - 3 67.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000149389 ENSMUSP00000122216 TRANSLATION protein_coding stop - 3 225.0 0.0 1.75 0.0 60.7 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000171700 - NO_TRANSLATION retained_intron ENSMUSG00000025142 Aspscr1 ENSMUST00000168097 ENSMUSP00000130303 TRANSLATION nonsense_mediated_decay - - 5 48.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000151531 - NO_TRANSLATION retained_intron ENSMUSG00000025142 Aspscr1 ENSMUST00000103016 ENSMUSP00000099305 TRANSLATION protein_coding - CCDS25752.1 5 473.0 0.0 5.96 5.1 24.2 0.0 -4,-6 0.8025 11 4.172 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000135346 ENSMUSP00000120072 TRANSLATION protein_coding stop - 2 178.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000152990 - NO_TRANSLATION retained_intron ENSMUSG00000025142 Aspscr1 ENSMUST00000143844 ENSMUSP00000129320 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000169964 - NO_TRANSLATION retained_intron ENSMUSG00000025142 Aspscr1 ENSMUST00000106159 ENSMUSP00000101765 TRANSLATION protein_coding - CCDS25752.1 5 473.0 0.0 5.96 5.1 24.2 0.0 -4,-6 0.8025 11 4.172 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000151160 ENSMUSP00000116447 TRANSLATION protein_coding stop - 3 220.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000026135 ENSMUSP00000026135 TRANSLATION protein_coding - CCDS25751.1 1 550.0 0.0 8.21 1.8 113.0 0.0 -4,-2 1.0 15 12.39 PRINCIPAL:1 ENSMUSG00000025142 Aspscr1 ENSMUST00000131727 ENSMUSP00000117654 TRANSLATION protein_coding stop - 3 177.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000129644 ENSMUSP00000117353 TRANSLATION protein_coding stop - 5 22.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000127269 ENSMUSP00000123650 TRANSLATION protein_coding stop - 3 25.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000168947 ENSMUSP00000125851 TRANSLATION nonsense_mediated_decay start - 3 25.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000106158 ENSMUSP00000101764 TRANSLATION protein_coding - CCDS49008.1 5 452.0 0.0 5.21 0.0 0.0 0.0 -4,-6 0.0117 9 0.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000172392 - NO_TRANSLATION retained_intron ENSMUSG00000025142 Aspscr1 ENSMUST00000168510 ENSMUSP00000125931 TRANSLATION protein_coding start/stop - 5 136.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000025142 Aspscr1 ENSMUST00000167678 ENSMUSP00000128940 TRANSLATION protein_coding start - 5 178.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020739 Nup85 ENSMUST00000021085 ENSMUSP00000021085 TRANSLATION protein_coding - CCDS25640.1 1 656.0 0.0 8.641 26.2 594.5 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000020739 Nup85 ENSMUST00000128745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020739 Nup85 ENSMUST00000135893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020739 Nup85 ENSMUST00000144473 ENSMUSP00000116069 TRANSLATION protein_coding start/stop - 5 274.0 0.0 4.7 0.0 267.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000020739 Nup85 ENSMUST00000140986 ENSMUSP00000117333 TRANSLATION protein_coding start/stop - 5 280.0 0.0 4.575 0.0 288.9 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000020739 Nup85 ENSMUST00000127126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020739 Nup85 ENSMUST00000134209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020739 Nup85 ENSMUST00000138998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020739 Nup85 ENSMUST00000143351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020532 Acaca ENSMUST00000020843 ENSMUSP00000020843 TRANSLATION protein_coding - CCDS25185.1 1 2345.0 19.0 45.31 12.2 1993.6 0.0 -4,-5 1.0 92 21.0 PRINCIPAL:1 ENSMUSG00000020532 Acaca ENSMUST00000133811 ENSMUSP00000116174 TRANSLATION protein_coding stop - 1 157.0 0.0 1.0 0.0 0.0 0.0 0,2 0.0019 2 -2.0 MINOR ENSMUSG00000020532 Acaca ENSMUST00000130012 ENSMUSP00000117972 TRANSLATION protein_coding stop - 5 312.0 0.0 6.25 0.0 111.5 0.0 -4,-5 0.0017 12 -2.0 MINOR ENSMUSG00000020532 Acaca ENSMUST00000184534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020532 Acaca ENSMUST00000136463 ENSMUSP00000116295 TRANSLATION protein_coding stop - 5 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020532 Acaca ENSMUST00000103201 ENSMUSP00000099490 TRANSLATION protein_coding - CCDS25185.1 5 2345.0 19.0 45.31 12.2 1993.6 0.0 -4,-5 1.0 92 21.0 PRINCIPAL:1 ENSMUSG00000020532 Acaca ENSMUST00000183548 - NO_TRANSLATION retained_intron ENSMUSG00000020532 Acaca ENSMUST00000183887 ENSMUSP00000139378 TRANSLATION protein_coding start/stop - 3 228.0 0.0 0.795 0.0 196.1 0.0 -4,-6 0.0 11 -2.0 MINOR ENSMUSG00000020532 Acaca ENSMUST00000137500 ENSMUSP00000121274 TRANSLATION protein_coding stop - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038811 Gngt2 ENSMUST00000100532 ENSMUSP00000098101 TRANSLATION protein_coding - CCDS25284.1 1 69.0 0.0 1.75 27.1 51.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038811 Gngt2 ENSMUST00000107709 ENSMUSP00000103337 TRANSLATION protein_coding - CCDS25284.1 2 69.0 0.0 1.75 27.1 51.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038811 Gngt2 ENSMUST00000036088 ENSMUSP00000047586 TRANSLATION protein_coding - CCDS25284.1 1 69.0 0.0 1.75 27.1 51.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038811 Gngt2 ENSMUST00000107711 ENSMUSP00000103339 TRANSLATION protein_coding - CCDS25284.1 2 69.0 0.0 1.75 27.1 51.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038811 Gngt2 ENSMUST00000107714 ENSMUSP00000103342 TRANSLATION protein_coding - CCDS25284.1 3 69.0 0.0 1.75 27.1 51.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038811 Gngt2 ENSMUST00000107708 ENSMUSP00000103336 TRANSLATION protein_coding - CCDS25284.1 2 69.0 0.0 1.75 27.1 51.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038811 Gngt2 ENSMUST00000107712 ENSMUSP00000103340 TRANSLATION protein_coding - CCDS25284.1 2 69.0 0.0 1.75 27.1 51.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000049904 Tmem17 ENSMUST00000059319 ENSMUSP00000051414 TRANSLATION protein_coding - CCDS24470.1 1 198.0 0.0 3.0 11.0 104.4 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000000804 Usp32 ENSMUST00000172595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000804 Usp32 ENSMUST00000174602 ENSMUSP00000134476 TRANSLATION protein_coding start/stop - 3 257.0 0.0 1.5075 0.0 106.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000804 Usp32 ENSMUST00000000821 ENSMUSP00000000821 TRANSLATION nonsense_mediated_decay start - 5 287.0 2.0 4.6 0.0 170.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000000804 Usp32 ENSMUST00000173271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000804 Usp32 ENSMUST00000108075 ENSMUSP00000103710 TRANSLATION protein_coding - CCDS36264.1 2 1604.0 2.0 7.9575 9.9 429.9 0.0 -4,-5 1.0 20 17.0 PRINCIPAL:1 ENSMUSG00000000804 Usp32 ENSMUST00000172515 ENSMUSP00000133781 TRANSLATION nonsense_mediated_decay start - 5 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000804 Usp32 ENSMUST00000173156 ENSMUSP00000133531 TRANSLATION protein_coding start - 3 174.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000000804 Usp32 ENSMUST00000172950 - NO_TRANSLATION retained_intron ENSMUSG00000000804 Usp32 ENSMUST00000174809 - NO_TRANSLATION retained_intron ENSMUSG00000050910 Cdr2l ENSMUST00000053288 ENSMUSP00000052096 TRANSLATION protein_coding - CCDS36371.1 1 465.0 0.0 0.0 12.2 0.0 0.0 -4,-5 1.0 5 3.0 PRINCIPAL:1 ENSMUSG00000040620 Dhx33 ENSMUST00000049048 ENSMUSP00000038018 TRANSLATION nonsense_mediated_decay start - 5 82.0 2.0 0.4 0.0 0.0 0.0 -3,-1 0.0 3 -2.0 MINOR ENSMUSG00000040620 Dhx33 ENSMUST00000108527 ENSMUSP00000104167 TRANSLATION protein_coding - CCDS24971.1 1 698.0 10.0 13.98 3.5 217.0 0.0 -4,-7 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000040620 Dhx33 ENSMUST00000155044 ENSMUSP00000136782 TRANSLATION nonsense_mediated_decay start - 3 47.0 0.0 0.1 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000040620 Dhx33 ENSMUST00000123860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040620 Dhx33 ENSMUST00000124464 ENSMUSP00000136051 TRANSLATION protein_coding - - 5 474.0 2.0 7.75 0.0 139.4 0.0 -4,-7 0.0 5 2.01 MINOR ENSMUSG00000040620 Dhx33 ENSMUST00000178111 - NO_TRANSLATION retained_intron ENSMUSG00000040620 Dhx33 ENSMUST00000146203 ENSMUSP00000136913 TRANSLATION nonsense_mediated_decay start - 1 106.0 0.0 2.4 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000040620 Dhx33 ENSMUST00000178218 - NO_TRANSLATION retained_intron ENSMUSG00000040620 Dhx33 ENSMUST00000179635 - NO_TRANSLATION retained_intron ENSMUSG00000032892 Rangrf ENSMUST00000150017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032892 Rangrf ENSMUST00000144271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032892 Rangrf ENSMUST00000156178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032892 Rangrf ENSMUST00000138362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032892 Rangrf ENSMUST00000132093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032892 Rangrf ENSMUST00000038644 ENSMUSP00000038485 TRANSLATION protein_coding - CCDS24875.1 1 185.0 0.0 4.5 9.9 131.2 0.0 -3,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000032892 Rangrf ENSMUST00000143444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032892 Rangrf ENSMUST00000133099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054406 Or3a1d ENSMUST00000080365 ENSMUSP00000079235 TRANSLATION protein_coding - CCDS48846.1 - 315.0 0.0 3.0 11.0 194.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054406 Or3a1d ENSMUST00000141134 ENSMUSP00000145878 TRANSLATION protein_coding stop - 3 110.0 0.0 1.0 0.0 59.2 3.0 -4,-1 0.0022 - -2.0 MINOR ENSMUSG00000054406 Or3a1d ENSMUST00000214769 ENSMUSP00000149978 TRANSLATION protein_coding - CCDS48846.1 5 315.0 0.0 3.0 11.0 194.7 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020546 Stxbp4 ENSMUST00000020858 ENSMUSP00000020858 TRANSLATION protein_coding stop - 1 533.0 0.0 2.7 0.0 38.4 0.0 -4,-7 0.0165 7 -2.0 MINOR ENSMUSG00000020546 Stxbp4 ENSMUST00000107875 ENSMUSP00000103507 TRANSLATION protein_coding - - 1 258.0 0.0 2.7 0.0 38.4 0.0 -4,-7 0.0003 2 6.624 MINOR ENSMUSG00000020546 Stxbp4 ENSMUST00000107872 ENSMUSP00000103504 TRANSLATION protein_coding - - 1 226.0 0.0 2.7 0.0 38.4 0.0 -4,-7 0.0003 2 6.624 MINOR ENSMUSG00000020546 Stxbp4 ENSMUST00000132078 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020546 Stxbp4 ENSMUST00000123260 ENSMUSP00000122365 TRANSLATION protein_coding start - 1 154.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020546 Stxbp4 ENSMUST00000143203 ENSMUSP00000116191 TRANSLATION protein_coding - CCDS25242.1 1 557.0 0.0 3.8 7.6 81.5 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000020546 Stxbp4 ENSMUST00000132905 ENSMUSP00000117910 TRANSLATION protein_coding stop - 3 30.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000000126 Wnt9a ENSMUST00000000128 ENSMUSP00000000128 TRANSLATION protein_coding - - 5 365.0 0.0 1.54 20.1 316.0 0.0 2,-2 0.8337 1 12.0 ALTERNATIVE:1 ENSMUSG00000000126 Wnt9a ENSMUST00000108783 ENSMUSP00000104411 TRANSLATION protein_coding - CCDS36169.1 1 365.0 0.0 1.54 20.1 321.0 0.0 2,-2 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000095187 Or2y11 ENSMUST00000167248 ENSMUSP00000126003 TRANSLATION protein_coding - CCDS24616.1 - 311.0 0.0 1.0 10.7 162.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095187 Or2y11 ENSMUST00000213256 ENSMUSP00000149881 TRANSLATION protein_coding - CCDS24616.1 5 311.0 0.0 1.0 10.7 162.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000009073 Nf2 ENSMUST00000109908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009073 Nf2 ENSMUST00000172305 ENSMUSP00000130263 TRANSLATION protein_coding stop - 3 131.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000009073 Nf2 ENSMUST00000152656 ENSMUSP00000128494 TRANSLATION nonsense_mediated_decay start - 5 140.0 0.0 3.75 0.0 89.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000009073 Nf2 ENSMUST00000141342 - NO_TRANSLATION retained_intron ENSMUSG00000009073 Nf2 ENSMUST00000056290 ENSMUSP00000055061 TRANSLATION protein_coding - CCDS56757.1 1 591.0 0.0 13.46 17.4 440.1 0.0 -4,-1 0.8364 11 11.812 MINOR ENSMUSG00000009073 Nf2 ENSMUST00000093374 ENSMUSP00000091066 TRANSLATION protein_coding start - 5 521.0 0.0 11.46 0.0 396.8 0.0 -4,-5 0.0011 11 -2.0 MINOR ENSMUSG00000009073 Nf2 ENSMUST00000053079 ENSMUSP00000055033 TRANSLATION protein_coding - CCDS56757.1 1 591.0 0.0 13.46 17.4 440.1 0.0 -4,-1 0.8364 11 11.812 MINOR ENSMUSG00000009073 Nf2 ENSMUST00000137926 ENSMUSP00000116505 TRANSLATION protein_coding start/stop - 3 159.0 0.0 4.75 0.0 117.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000009073 Nf2 ENSMUST00000124878 ENSMUSP00000132184 TRANSLATION nonsense_mediated_decay start - 5 83.0 0.0 2.33 0.0 33.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000009073 Nf2 ENSMUST00000109910 ENSMUSP00000105536 TRANSLATION protein_coding - CCDS24391.1 1 596.0 0.0 13.96 27.9 467.2 0.0 -4,-1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000009073 Nf2 ENSMUST00000167480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009073 Nf2 ENSMUST00000155600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009073 Nf2 ENSMUST00000164190 ENSMUSP00000129388 TRANSLATION protein_coding stop - 5 251.0 0.0 7.33 0.0 155.0 0.0 -4,-1 0.0 6 -2.0 MINOR ENSMUSG00000070380 Or3a1b ENSMUST00000079827 ENSMUSP00000078756 TRANSLATION protein_coding - CCDS25025.1 - 315.0 0.0 1.0 12.5 171.3 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070380 Or3a1b ENSMUST00000213754 ENSMUSP00000149542 TRANSLATION protein_coding - CCDS25025.1 5 315.0 0.0 1.0 12.5 171.3 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020821 Kif1c ENSMUST00000094499 ENSMUSP00000092075 TRANSLATION protein_coding - CCDS24965.1 1 1100.0 11.0 13.9 0.0 628.7 0.0 -4,-1 0.8016 15 14.0 ALTERNATIVE:2 ENSMUSG00000020821 Kif1c ENSMUST00000072187 ENSMUSP00000072048 TRANSLATION protein_coding - - 1 1112.0 11.0 13.9 0.0 628.7 0.0 -4,-1 0.9901 15 14.0 PRINCIPAL:4 ENSMUSG00000020821 Kif1c ENSMUST00000137119 ENSMUSP00000123242 TRANSLATION protein_coding - CCDS24965.1 5 1100.0 11.0 13.9 0.0 628.7 0.0 -4,-1 0.8016 15 14.0 ALTERNATIVE:2 ENSMUSG00000020821 Kif1c ENSMUST00000152618 ENSMUSP00000136258 TRANSLATION protein_coding - - 1 425.0 11.0 9.3 0.0 423.9 0.0 -4,-1 0.0037 5 6.4 MINOR ENSMUSG00000020821 Kif1c ENSMUST00000102554 ENSMUSP00000099614 TRANSLATION protein_coding - CCDS24965.1 5 1100.0 11.0 13.9 0.0 628.7 0.0 -4,-1 0.8016 15 14.0 ALTERNATIVE:2 ENSMUSG00000011256 Adam19 ENSMUST00000011400 ENSMUSP00000011400 TRANSLATION protein_coding - CCDS24571.1 1 920.0 18.0 8.178 2.3 495.6 0.0 3,-2 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000011256 Adam19 ENSMUST00000153410 - NO_TRANSLATION retained_intron ENSMUSG00000011256 Adam19 ENSMUST00000137014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011256 Adam19 ENSMUST00000151565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042298 Ttc19 ENSMUST00000162385 ENSMUSP00000125618 TRANSLATION protein_coding start - 5 202.0 0.0 5.25 0.0 48.9 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000042298 Ttc19 ENSMUST00000136477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042298 Ttc19 ENSMUST00000154976 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042298 Ttc19 ENSMUST00000101075 ENSMUSP00000098636 TRANSLATION protein_coding - CCDS48817.1 1 352.0 0.0 7.3 0.1 68.4 0.0 -3,0 0.1983 6 10.998 MINOR ENSMUSG00000042298 Ttc19 ENSMUST00000050646 ENSMUSP00000054367 TRANSLATION protein_coding - CCDS36177.1 1 365.0 0.0 7.8 1.4 68.4 0.0 -3,0 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000020311 Erlec1 ENSMUST00000152770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020311 Erlec1 ENSMUST00000143126 ENSMUSP00000126490 TRANSLATION nonsense_mediated_decay start - 5 80.0 2.0 0.75 0.0 39.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020311 Erlec1 ENSMUST00000155304 - NO_TRANSLATION retained_intron ENSMUSG00000020311 Erlec1 ENSMUST00000073192 ENSMUSP00000072929 TRANSLATION protein_coding - CCDS24509.1 1 483.0 8.0 1.76 7.4 157.5 0.0 -2,-5 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000020311 Erlec1 ENSMUST00000129593 ENSMUSP00000129078 TRANSLATION nonsense_mediated_decay start - 5 238.0 2.0 0.95 0.0 75.7 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000069835 Sat2 ENSMUST00000092969 ENSMUSP00000090647 TRANSLATION protein_coding - CCDS36194.1 1 170.0 22.0 4.5 9.1 68.5 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000069835 Sat2 ENSMUST00000151255 - NO_TRANSLATION retained_intron ENSMUSG00000069835 Sat2 ENSMUST00000108656 ENSMUSP00000104296 TRANSLATION protein_coding - CCDS36194.1 1 170.0 22.0 4.5 9.1 68.5 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000020743 Mif4gd ENSMUST00000127132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020743 Mif4gd ENSMUST00000139556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020743 Mif4gd ENSMUST00000137304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020743 Mif4gd ENSMUST00000146244 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020743 Mif4gd ENSMUST00000106507 ENSMUSP00000102116 TRANSLATION protein_coding - CCDS25643.1 1 222.0 0.0 5.75 31.3 48.5 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000020743 Mif4gd ENSMUST00000148574 ENSMUSP00000119643 TRANSLATION protein_coding stop - 3 162.0 0.0 4.25 0.0 25.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020743 Mif4gd ENSMUST00000124407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020743 Mif4gd ENSMUST00000142637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020743 Mif4gd ENSMUST00000021087 ENSMUSP00000021087 TRANSLATION protein_coding - CCDS25643.1 1 222.0 0.0 5.75 31.3 48.5 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000020743 Mif4gd ENSMUST00000106506 ENSMUSP00000102115 TRANSLATION protein_coding - CCDS56818.1 3 203.0 0.0 5.25 0.1 28.8 0.0 -4,-5 0.0508 5 8.562 MINOR ENSMUSG00000042826 Fgf11 ENSMUST00000102585 ENSMUSP00000099645 TRANSLATION protein_coding - CCDS24911.1 1 225.0 0.0 4.5 11.0 132.6 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042826 Fgf11 ENSMUST00000011285 ENSMUSP00000011285 TRANSLATION protein_coding - CCDS70218.1 1 197.0 0.0 3.75 4.1 60.5 0.0 -4,-2 0.1068 - 7.104 MINOR ENSMUSG00000020419 Hormad2 ENSMUST00000109948 ENSMUSP00000105574 TRANSLATION protein_coding - CCDS36096.1 5 306.0 0.0 0.94712 7.7 204.6 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020419 Hormad2 ENSMUST00000020689 ENSMUSP00000020689 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 0.4 0.0 39.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020419 Hormad2 ENSMUST00000109949 ENSMUSP00000105575 TRANSLATION protein_coding - CCDS36096.1 1 306.0 0.0 0.94712 7.7 204.6 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020419 Hormad2 ENSMUST00000130174 ENSMUSP00000121715 TRANSLATION protein_coding stop - 3 105.0 0.0 0.7 0.0 82.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020419 Hormad2 ENSMUST00000149443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020419 Hormad2 ENSMUST00000124249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049588 Ccdc69 ENSMUST00000055040 ENSMUSP00000054840 TRANSLATION protein_coding - CCDS36155.1 1 202.0 0.0 5.35 0.4 0.0 0.0 -4,-7 0.9942 2 6.0 PRINCIPAL:1 ENSMUSG00000049588 Ccdc69 ENSMUST00000108880 ENSMUSP00000104508 TRANSLATION protein_coding - - 1 176.0 0.0 4.6 0.0 0.0 0.0 -4,-7 0.0117 2 4.5 MINOR ENSMUSG00000020930 Ccdc103 ENSMUST00000159834 ENSMUSP00000125214 TRANSLATION protein_coding - - 1 105.0 0.0 0.9 0.0 101.2 0.0 -4,-5 0.029 - 8.424 MINOR ENSMUSG00000020930 Ccdc103 ENSMUST00000021307 ENSMUSP00000021307 TRANSLATION protein_coding - CCDS25506.1 1 237.0 0.0 0.9 4.2 160.8 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000048277 Syngr2 ENSMUST00000176936 - NO_TRANSLATION retained_intron ENSMUSG00000048277 Syngr2 ENSMUST00000143852 ENSMUSP00000135529 TRANSLATION protein_coding stop - 1 119.0 0.0 2.83 0.0 57.7 5.0 0,-3 0.0063 - -2.0 MINOR ENSMUSG00000048277 Syngr2 ENSMUST00000120928 ENSMUSP00000113941 TRANSLATION protein_coding - - 2 194.0 0.0 4.18 0.0 58.6 6.0 -4,-2 0.0055 1 8.448 MINOR ENSMUSG00000048277 Syngr2 ENSMUST00000177131 ENSMUSP00000134789 TRANSLATION protein_coding - - 3 177.0 0.0 4.18 0.0 79.1 8.0 -4,-7 0.0232 1 10.002 MINOR ENSMUSG00000048277 Syngr2 ENSMUST00000026649 ENSMUSP00000026649 TRANSLATION protein_coding - CCDS25691.1 1 224.0 0.0 5.18 20.0 78.2 8.0 -4,-7 1.0 1 15.934 PRINCIPAL:1 ENSMUSG00000048277 Syngr2 ENSMUST00000177241 ENSMUSP00000135171 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000048277 Syngr2 ENSMUST00000175737 ENSMUSP00000134879 TRANSLATION protein_coding start - 3 147.0 0.0 2.6 0.0 43.5 5.0 -3,-1 0.0029 1 -2.0 MINOR ENSMUSG00000020429 Igfbp1 ENSMUST00000020704 ENSMUSP00000020704 TRANSLATION protein_coding - CCDS24427.1 1 272.0 0.0 2.6 2.5 115.3 0.0 3,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000049154 Fam183b ENSMUST00000094156 ENSMUSP00000091708 TRANSLATION protein_coding - - 1 135.0 0.0 3.75 11.9 109.0 0.0 -4,-6 0.8611 1 11.0 ALTERNATIVE:1 ENSMUSG00000049154 Fam183b ENSMUST00000238886 ENSMUSP00000159184 TRANSLATION protein_coding - CCDS48807.1 - 117.0 0.0 3.0 1.8 51.2 0.0 -4,-6 0.0553 1 4.719 MINOR ENSMUSG00000049154 Fam183b ENSMUST00000239007 ENSMUSP00000159142 TRANSLATION protein_coding - CCDS48808.1 - 137.0 0.0 3.75 11.9 109.0 0.0 -4,-6 1.0 1 11.0 PRINCIPAL:4 ENSMUSG00000049154 Fam183b ENSMUST00000060581 ENSMUSP00000051960 TRANSLATION protein_coding - - 1 115.0 0.0 3.0 1.8 51.2 0.0 -4,-6 0.0332 1 4.719 MINOR ENSMUSG00000020297 Nsg2 ENSMUST00000109409 ENSMUSP00000105036 TRANSLATION protein_coding - - 2 92.0 0.0 0.0 0.0 99.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000020297 Nsg2 ENSMUST00000020537 ENSMUSP00000020537 TRANSLATION protein_coding - CCDS24516.1 1 171.0 0.0 1.0 10.3 238.9 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020297 Nsg2 ENSMUST00000093219 ENSMUSP00000090907 TRANSLATION protein_coding - - 1 100.0 0.0 0.0 0.0 97.3 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000019189 Rnf145 ENSMUST00000019333 ENSMUSP00000019333 TRANSLATION protein_coding - CCDS24565.1 1 663.0 8.0 0.332 5.4 552.0 8.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000019189 Rnf145 ENSMUST00000124959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019189 Rnf145 ENSMUST00000101327 ENSMUSP00000098881 TRANSLATION protein_coding - CCDS48775.1 1 266.0 0.0 0.0 0.0 177.3 4.0 -4,-7 0.0347 - 0.0 MINOR ENSMUSG00000019189 Rnf145 ENSMUST00000127907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019189 Rnf145 ENSMUST00000150257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019189 Rnf145 ENSMUST00000129676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045980 Tmem104 ENSMUST00000061450 ENSMUSP00000056805 TRANSLATION protein_coding - CCDS25623.1 1 496.0 0.0 0.0 31.7 79.4 7.0 -4,-6 1.0 4 4.0 PRINCIPAL:4 ENSMUSG00000045980 Tmem104 ENSMUST00000156230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045980 Tmem104 ENSMUST00000100235 ENSMUSP00000097807 TRANSLATION protein_coding - - 1 495.0 0.0 0.0 31.7 76.5 7.0 -4,-6 0.832 4 4.0 ALTERNATIVE:1 ENSMUSG00000045980 Tmem104 ENSMUST00000135536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039110 Mycbpap ENSMUST00000139432 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039110 Mycbpap ENSMUST00000093945 ENSMUSP00000091477 TRANSLATION protein_coding - CCDS48887.1 5 932.0 0.0 0.0 0.0 480.3 0.0 -4,-5 0.6383 1 2.0 ALTERNATIVE:2 ENSMUSG00000039110 Mycbpap ENSMUST00000151993 - NO_TRANSLATION retained_intron ENSMUSG00000039110 Mycbpap ENSMUST00000239238 ENSMUSP00000159222 TRANSLATION protein_coding - - - 942.0 0.0 0.0 0.1 480.3 0.0 -4,-5 0.8069 1 2.0 PRINCIPAL:4 ENSMUSG00000039110 Mycbpap ENSMUST00000149872 - NO_TRANSLATION retained_intron ENSMUSG00000039110 Mycbpap ENSMUST00000040692 ENSMUSP00000047579 TRANSLATION protein_coding - - 1 414.0 0.0 0.0 0.0 73.0 0.0 -4,-5 0.0024 1 0.0 MINOR ENSMUSG00000039110 Mycbpap ENSMUST00000123496 - NO_TRANSLATION retained_intron ENSMUSG00000020264 Slc36a2 ENSMUST00000125560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020264 Slc36a2 ENSMUST00000039305 ENSMUSP00000045613 TRANSLATION protein_coding - CCDS24709.1 1 478.0 0.0 6.03 9.1 245.7 0.0 -4,-7 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000078259 Gm11554 ENSMUST00000105056 ENSMUSP00000100677 TRANSLATION protein_coding - CCDS48920.1 - 190.0 0.0 0.0 0.9 138.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000020142 Slc1a4 ENSMUST00000109594 ENSMUSP00000105223 TRANSLATION protein_coding - CCDS24457.1 1 532.0 0.0 6.5 9.7 398.7 10.0 -4,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000020142 Slc1a4 ENSMUST00000004634 ENSMUSP00000004634 TRANSLATION protein_coding - - 1 452.0 0.0 6.0 0.9 381.7 9.0 2,-3 0.031 4 9.978 MINOR ENSMUSG00000001445 Mrpl10 ENSMUST00000054252 ENSMUSP00000103244 TRANSLATION protein_coding - - 5 184.0 0.0 3.5 0.0 0.0 0.0 -4,0 0.0091 2 1.998 MINOR ENSMUSG00000001445 Mrpl10 ENSMUST00000001485 ENSMUSP00000001485 TRANSLATION protein_coding - CCDS25312.1 1 262.0 0.0 5.5 5.1 0.0 0.0 -4,0 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000020937 Plcd3 ENSMUST00000143012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020937 Plcd3 ENSMUST00000142970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020937 Plcd3 ENSMUST00000124740 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020937 Plcd3 ENSMUST00000128650 ENSMUSP00000117455 TRANSLATION protein_coding start - 1 471.0 14.0 7.85 0.0 400.6 0.0 -4,-2 0.0013 9 -2.0 MINOR ENSMUSG00000020937 Plcd3 ENSMUST00000103077 ENSMUSP00000099366 TRANSLATION protein_coding - CCDS25512.1 1 785.0 14.0 11.85 6.2 487.9 0.0 -3,0 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000057135 Scimp ENSMUST00000108534 ENSMUSP00000104174 TRANSLATION protein_coding - CCDS24967.1 1 150.0 0.0 1.0 3.5 223.2 2.0 0,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000057135 Scimp ENSMUST00000074572 ENSMUSP00000074157 TRANSLATION protein_coding - - 1 81.0 0.0 1.0 0.0 71.4 2.0 -1,-5 0.0263 - 6.0 MINOR ENSMUSG00000078676 Casc3 ENSMUST00000147065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078676 Casc3 ENSMUST00000017384 ENSMUSP00000017384 TRANSLATION protein_coding - CCDS36302.1 2 698.0 0.0 1.0 7.5 84.6 0.0 -4,-6 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000078676 Casc3 ENSMUST00000144220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078676 Casc3 ENSMUST00000169695 ENSMUSP00000130926 TRANSLATION protein_coding - CCDS36302.1 1 698.0 0.0 1.0 7.5 84.6 0.0 -4,-6 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000048329 Mfsd6l ENSMUST00000053211 ENSMUSP00000061601 TRANSLATION protein_coding - CCDS24867.1 - 586.0 0.0 0.0 1.0 130.8 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000001494 Sost ENSMUST00000001534 ENSMUSP00000001534 TRANSLATION protein_coding - CCDS25481.1 1 211.0 0.0 2.0 9.2 325.8 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000020453 Patz1 ENSMUST00000101644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020453 Patz1 ENSMUST00000057089 ENSMUSP00000050684 TRANSLATION protein_coding - CCDS24356.1 1 641.0 28.0 2.73 9.0 296.1 0.0 -4,-5 0.8183 7 14.748 MINOR ENSMUSG00000020453 Patz1 ENSMUST00000110043 ENSMUSP00000105670 TRANSLATION protein_coding - - 5 687.0 31.0 3.6285 11.0 327.1 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000020453 Patz1 ENSMUST00000136285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020453 Patz1 ENSMUST00000094471 ENSMUSP00000092043 TRANSLATION protein_coding - - 1 537.0 15.0 1.558 9.0 149.4 0.0 -4,-5 0.5126 5 4.26 MINOR ENSMUSG00000020453 Patz1 ENSMUST00000134089 ENSMUSP00000138522 TRANSLATION protein_coding - - 1 102.0 8.0 1.729 0.0 0.0 0.0 -4,-6 0.0 - 2.202 MINOR ENSMUSG00000020453 Patz1 ENSMUST00000123983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020453 Patz1 ENSMUST00000154319 ENSMUSP00000122832 TRANSLATION protein_coding stop - 5 70.0 7.0 1.396 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020453 Patz1 ENSMUST00000144396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020453 Patz1 ENSMUST00000153603 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020453 Patz1 ENSMUST00000093402 ENSMUSP00000091103 TRANSLATION protein_coding - CCDS56754.1 2 537.0 25.0 2.465 9.0 175.4 0.0 -4,-5 0.567 6 8.07 MINOR ENSMUSG00000020453 Patz1 ENSMUST00000142561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011254 Thg1l ENSMUST00000131182 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011254 Thg1l ENSMUST00000109254 ENSMUSP00000104877 TRANSLATION protein_coding - CCDS70167.1 1 238.0 8.0 4.75 3.2 283.2 0.0 -4,-6 0.1143 3 10.22 MINOR ENSMUSG00000011254 Thg1l ENSMUST00000011398 ENSMUSP00000011398 TRANSLATION protein_coding - CCDS36132.1 1 298.0 14.0 5.55 7.1 331.5 0.0 -2,1 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000011254 Thg1l ENSMUST00000133238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011254 Thg1l ENSMUST00000133851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047197 Gjd3 ENSMUST00000062931 ENSMUSP00000055246 TRANSLATION protein_coding stop CCDS25369.1 - 278.0 0.0 0.4 0.4 261.3 0.0 -1,-3 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000025132 Arhgdia ENSMUST00000106197 ENSMUSP00000101803 TRANSLATION protein_coding - CCDS25743.1 1 204.0 0.0 4.25 34.9 273.7 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000025132 Arhgdia ENSMUST00000067936 ENSMUSP00000063714 TRANSLATION protein_coding - CCDS25743.1 1 204.0 0.0 4.25 34.9 273.7 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000045667 Smtnl2 ENSMUST00000125807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045667 Smtnl2 ENSMUST00000050226 ENSMUSP00000059043 TRANSLATION protein_coding - CCDS24985.1 1 456.0 0.0 2.6 6.1 78.8 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000045667 Smtnl2 ENSMUST00000108500 ENSMUSP00000104140 TRANSLATION protein_coding - - 1 422.0 0.0 2.6 0.0 78.8 0.0 -4,-1 0.0525 5 12.0 MINOR ENSMUSG00000045667 Smtnl2 ENSMUST00000143345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000690 Hoxb6 ENSMUST00000173432 ENSMUSP00000133281 TRANSLATION protein_coding - CCDS25295.1 5 224.0 0.0 1.0 17.8 75.7 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000000690 Hoxb6 ENSMUST00000000704 ENSMUSP00000000704 TRANSLATION protein_coding - CCDS25295.1 1 224.0 0.0 1.0 17.8 75.7 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000043372 Hexim2 ENSMUST00000062530 ENSMUSP00000053678 TRANSLATION protein_coding - CCDS25514.1 1 313.0 0.0 0.6 0.4 157.5 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000043372 Hexim2 ENSMUST00000150275 ENSMUSP00000122591 TRANSLATION protein_coding stop - 5 125.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000043372 Hexim2 ENSMUST00000130341 ENSMUSP00000114405 TRANSLATION protein_coding stop - 1 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043372 Hexim2 ENSMUST00000124928 ENSMUSP00000116991 TRANSLATION protein_coding stop - 1 174.0 0.0 0.0 0.0 101.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000043372 Hexim2 ENSMUST00000107037 ENSMUSP00000102652 TRANSLATION protein_coding - CCDS25514.1 2 313.0 0.0 0.6 0.4 157.5 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000005947 Itgae ENSMUST00000006101 ENSMUSP00000006101 TRANSLATION protein_coding - CCDS24995.1 1 1167.0 16.0 8.7745 0.4 292.2 0.0 0,-3 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000005947 Itgae ENSMUST00000102537 - NO_TRANSLATION retained_intron ENSMUSG00000017390 Aldoc ENSMUST00000124090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017390 Aldoc ENSMUST00000102478 ENSMUSP00000099536 TRANSLATION protein_coding - CCDS25099.1 1 363.0 14.0 7.25 36.9 605.5 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000017390 Aldoc ENSMUST00000148689 - NO_TRANSLATION retained_intron ENSMUSG00000017390 Aldoc ENSMUST00000128032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017390 Aldoc ENSMUST00000017534 ENSMUSP00000017534 TRANSLATION protein_coding - CCDS25099.1 1 363.0 14.0 7.25 36.9 605.5 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000017390 Aldoc ENSMUST00000156039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000301 Pemt ENSMUST00000000310 ENSMUSP00000000310 TRANSLATION protein_coding - CCDS24782.1 3 199.0 0.0 5.49 13.1 114.6 11.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000000301 Pemt ENSMUST00000150954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000301 Pemt ENSMUST00000102692 ENSMUSP00000099753 TRANSLATION protein_coding - CCDS24782.1 1 199.0 0.0 5.49 13.1 114.6 11.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000000301 Pemt ENSMUST00000143646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000301 Pemt ENSMUST00000102693 ENSMUSP00000099754 TRANSLATION protein_coding - CCDS78957.1 1 236.0 0.0 5.49 1.1 114.6 11.0 -4,-5 0.3211 - 12.032 MINOR ENSMUSG00000000301 Pemt ENSMUST00000146461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000301 Pemt ENSMUST00000133028 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000301 Pemt ENSMUST00000136660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000301 Pemt ENSMUST00000148512 ENSMUSP00000120364 TRANSLATION protein_coding stop - 5 128.0 0.0 2.33 0.0 27.3 6.0 -4,-6 0.0036 - -2.0 MINOR ENSMUSG00000000301 Pemt ENSMUST00000147422 ENSMUSP00000116314 TRANSLATION protein_coding stop - 3 105.0 0.0 2.75 0.0 26.5 7.0 -4,-6 0.0036 - -2.0 MINOR ENSMUSG00000078253 Krtap16-1 ENSMUST00000105050 ENSMUSP00000100671 TRANSLATION protein_coding - CCDS56804.1 - 502.0 0.0 0.0 0.1 72.3 0.0 -4,-7 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000032740 Ccdc88a ENSMUST00000109477 ENSMUSP00000105103 TRANSLATION protein_coding - - 2 117.0 0.0 0.505 0.0 0.0 0.0 -4,-7 0.0 - 2.238 MINOR ENSMUSG00000032740 Ccdc88a ENSMUST00000123561 ENSMUSP00000119173 TRANSLATION protein_coding start/stop - 5 737.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0071 18 -2.0 MINOR ENSMUSG00000032740 Ccdc88a ENSMUST00000239407 ENSMUSP00000159356 TRANSLATION protein_coding - - - 2016.0 0.0 1.355 0.1 114.7 0.0 -4,-7 0.3134 38 12.0 MINOR ENSMUSG00000032740 Ccdc88a ENSMUST00000155854 ENSMUSP00000115117 TRANSLATION protein_coding start/stop - 5 405.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0019 7 -2.0 MINOR ENSMUSG00000032740 Ccdc88a ENSMUST00000040182 ENSMUSP00000048978 TRANSLATION protein_coding - CCDS24494.1 5 1845.0 0.0 1.355 8.5 114.7 0.0 -4,-7 1.0 39 15.0 PRINCIPAL:1 ENSMUSG00000032740 Ccdc88a ENSMUST00000140194 ENSMUSP00000114942 TRANSLATION protein_coding start/stop - 5 354.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 6 -2.0 MINOR ENSMUSG00000032740 Ccdc88a ENSMUST00000137227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032740 Ccdc88a ENSMUST00000144450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016559 H3f3b ENSMUST00000139623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016559 H3f3b ENSMUST00000139378 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016559 H3f3b ENSMUST00000106454 ENSMUSP00000102062 TRANSLATION protein_coding - CCDS36377.1 5 136.0 0.0 3.0 36.9 181.4 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000016559 H3f3b ENSMUST00000016703 ENSMUSP00000016703 TRANSLATION protein_coding - CCDS36377.1 1 136.0 0.0 3.0 36.9 181.4 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037750 Fam222b ENSMUST00000073705 ENSMUSP00000073384 TRANSLATION protein_coding - CCDS25089.1 1 562.0 0.0 0.0 11.0 853.3 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000037750 Fam222b ENSMUST00000100782 ENSMUSP00000126620 TRANSLATION protein_coding - CCDS83851.1 1 434.0 0.0 0.0 8.9 602.3 0.0 -4,-7 0.6103 1 2.37 MINOR ENSMUSG00000037750 Fam222b ENSMUST00000155571 ENSMUSP00000121832 TRANSLATION protein_coding - CCDS25089.1 1 562.0 0.0 0.0 11.0 853.3 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000020271 Fbxw11 ENSMUST00000076383 ENSMUSP00000075721 TRANSLATION protein_coding - CCDS36125.1 1 563.0 0.0 9.75 24.3 268.6 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000020271 Fbxw11 ENSMUST00000093205 ENSMUSP00000090893 TRANSLATION protein_coding - CCDS70157.1 1 542.0 0.0 9.75 8.5 268.6 0.0 -4,-5 0.5836 5 9.288 MINOR ENSMUSG00000020271 Fbxw11 ENSMUST00000109366 ENSMUSP00000104991 TRANSLATION protein_coding - CCDS70158.1 1 529.0 0.0 9.75 22.3 268.6 0.0 -4,-5 0.962 6 11.656 ALTERNATIVE:1 ENSMUSG00000020271 Fbxw11 ENSMUST00000143290 ENSMUSP00000116834 TRANSLATION nonsense_mediated_decay start - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020271 Fbxw11 ENSMUST00000137898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090225 Gm11559 ENSMUST00000092694 ENSMUSP00000090367 TRANSLATION protein_coding - CCDS48923.1 - 191.0 0.0 0.0 0.3 63.6 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000020155 Kcnmb1 ENSMUST00000020362 ENSMUSP00000020362 TRANSLATION protein_coding - CCDS24538.1 1 191.0 0.0 1.664 11.0 208.9 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000033987 Dnah17 ENSMUST00000217584 - NO_TRANSLATION retained_intron ENSMUSG00000033987 Dnah17 ENSMUST00000084803 ENSMUSP00000081864 TRANSLATION protein_coding - CCDS48994.1 5 4453.0 63.0 58.103 0.0 4347.7 0.0 -4,-5 0.713 23 16.512 MINOR ENSMUSG00000033987 Dnah17 ENSMUST00000132685 ENSMUSP00000120542 TRANSLATION protein_coding - - 5 4459.0 63.0 58.433 4.1 4361.5 0.0 -4,-5 1.0 23 20.0 PRINCIPAL:1 ENSMUSG00000033987 Dnah17 ENSMUST00000018719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006169 Clint1 ENSMUST00000109260 ENSMUSP00000104883 TRANSLATION protein_coding - CCDS36130.1 1 623.0 0.0 4.0 9.6 154.3 0.0 -4,-5 1.0 19 11.0 ALTERNATIVE:1 ENSMUSG00000006169 Clint1 ENSMUST00000109261 ENSMUSP00000104884 TRANSLATION protein_coding - CCDS83796.1 5 641.0 0.0 4.0 9.6 154.3 0.0 -4,-5 0.9506 20 11.0 PRINCIPAL:3 ENSMUSG00000006169 Clint1 ENSMUST00000133715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020484 Xbp1 ENSMUST00000063084 ENSMUSP00000054852 TRANSLATION protein_coding - CCDS24400.1 1 267.0 0.0 1.4 0.0 43.1 0.0 -2,0 0.3004 - 8.0 ALTERNATIVE:2 ENSMUSG00000020484 Xbp1 ENSMUST00000149159 ENSMUSP00000134088 TRANSLATION protein_coding start - 2 127.0 0.0 1.4 0.0 39.0 0.0 -4,-7 0.0337 - -2.0 MINOR ENSMUSG00000020484 Xbp1 ENSMUST00000149623 ENSMUSP00000135768 TRANSLATION protein_coding - - 2 214.0 0.0 1.4 0.0 39.4 0.0 -4,-5 0.0236 - 6.666 MINOR ENSMUSG00000020484 Xbp1 ENSMUST00000239150 ENSMUSP00000158915 TRANSLATION protein_coding - - - 371.0 0.0 1.4 2.1 43.1 0.0 -2,0 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000020484 Xbp1 ENSMUST00000145588 - NO_TRANSLATION retained_intron ENSMUSG00000020884 Asgr1 ENSMUST00000018699 ENSMUSP00000018699 TRANSLATION protein_coding - CCDS24933.1 1 284.0 8.0 6.38 7.2 258.7 2.0 -4,-6 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000020884 Asgr1 ENSMUST00000108585 ENSMUSP00000104226 TRANSLATION protein_coding - CCDS70224.1 5 255.0 8.0 5.63 0.0 213.3 2.0 -4,-6 0.0138 4 13.776 MINOR ENSMUSG00000020884 Asgr1 ENSMUST00000123369 ENSMUSP00000137469 TRANSLATION protein_coding stop - 5 132.0 1.0 3.25 0.0 108.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000020884 Asgr1 ENSMUST00000092959 ENSMUSP00000090637 TRANSLATION protein_coding - CCDS24933.1 2 284.0 8.0 6.38 7.2 258.7 2.0 -4,-6 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000020884 Asgr1 ENSMUST00000146411 ENSMUSP00000121842 TRANSLATION protein_coding - CCDS24933.1 1 284.0 8.0 6.38 7.2 258.7 2.0 -4,-6 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000000120 Ngfr ENSMUST00000000122 ENSMUSP00000000122 TRANSLATION protein_coding - CCDS25279.1 1 427.0 0.0 3.6 6.0 118.7 0.0 3,-2 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000035592 Krt33a ENSMUST00000018399 ENSMUSP00000018399 TRANSLATION protein_coding - CCDS25403.1 1 404.0 0.0 4.35 11.0 358.1 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000035592 Krt33a ENSMUST00000138756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058728 Cd300c ENSMUST00000106580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058728 Cd300c ENSMUST00000092466 ENSMUSP00000090123 TRANSLATION protein_coding - - 5 229.0 0.0 1.25 0.1 52.3 0.0 2,-2 0.8302 - 12.0 PRINCIPAL:1 ENSMUSG00000038195 Rilp ENSMUST00000156923 - NO_TRANSLATION retained_intron ENSMUSG00000038195 Rilp ENSMUST00000042972 ENSMUSP00000037238 TRANSLATION protein_coding - CCDS25049.1 1 369.0 0.0 2.0 2.5 117.9 0.0 -4,-1 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000018849 Wwc1 ENSMUST00000018993 ENSMUSP00000018993 TRANSLATION protein_coding - CCDS24545.1 1 1104.0 0.0 6.2 6.6 93.7 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000018849 Wwc1 ENSMUST00000127086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018849 Wwc1 ENSMUST00000131001 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020740 Gga3 ENSMUST00000128437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020740 Gga3 ENSMUST00000123485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020740 Gga3 ENSMUST00000148782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020740 Gga3 ENSMUST00000125097 ENSMUSP00000118024 TRANSLATION protein_coding stop - 2 117.0 0.0 3.08 0.0 130.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020740 Gga3 ENSMUST00000019135 ENSMUSP00000019135 TRANSLATION protein_coding - CCDS25641.1 1 718.0 5.0 12.78 0.1 327.8 0.0 -4,-5 0.2432 10 13.0 ALTERNATIVE:2 ENSMUSG00000020740 Gga3 ENSMUST00000156173 ENSMUSP00000138597 TRANSLATION nonsense_mediated_decay - - 1 595.0 0.0 8.95 0.0 230.4 0.0 -4,-5 0.0019 6 -2.0 MINOR ENSMUSG00000020740 Gga3 ENSMUST00000123831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020740 Gga3 ENSMUST00000136790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020740 Gga3 ENSMUST00000132503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020740 Gga3 ENSMUST00000154832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020740 Gga3 ENSMUST00000106508 ENSMUSP00000102117 TRANSLATION protein_coding - CCDS56817.1 1 640.0 5.0 12.78 0.0 327.8 0.0 -4,-5 1.0 10 13.0 PRINCIPAL:2 ENSMUSG00000020740 Gga3 ENSMUST00000149814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038485 Socs7 ENSMUST00000045540 ENSMUSP00000040896 TRANSLATION protein_coding - CCDS25319.1 1 579.0 0.0 2.24 4.7 70.2 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:2 ENSMUSG00000038485 Socs7 ENSMUST00000149212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038485 Socs7 ENSMUST00000238729 ENSMUSP00000158611 TRANSLATION protein_coding - - - 648.0 0.0 2.24 3.1 70.2 0.0 -4,-5 0.5463 1 9.136 ALTERNATIVE:2 ENSMUSG00000019301 Hsd17b1 ENSMUST00000019445 ENSMUSP00000019445 TRANSLATION protein_coding - CCDS25445.1 1 344.0 27.0 5.8 0.4 124.0 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000020716 Nf1 ENSMUST00000122917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020716 Nf1 ENSMUST00000108251 ENSMUSP00000103886 TRANSLATION protein_coding - - 5 2820.0 0.0 9.2 7.1 151.4 0.0 -4,-6 0.7702 57 9.761 ALTERNATIVE:1 ENSMUSG00000020716 Nf1 ENSMUST00000130979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020716 Nf1 ENSMUST00000131800 - NO_TRANSLATION retained_intron ENSMUSG00000020716 Nf1 ENSMUST00000145839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020716 Nf1 ENSMUST00000071325 ENSMUSP00000071289 TRANSLATION protein_coding - CCDS25119.1 2 2841.0 0.0 9.0125 11.4 142.6 0.0 -4,-6 1.0 57 10.628 PRINCIPAL:4 ENSMUSG00000020716 Nf1 ENSMUST00000137997 ENSMUSP00000120982 TRANSLATION protein_coding start - 1 826.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0073 21 -2.0 MINOR ENSMUSG00000020716 Nf1 ENSMUST00000146699 - NO_TRANSLATION retained_intron ENSMUSG00000020716 Nf1 ENSMUST00000219057 ENSMUSP00000151975 TRANSLATION protein_coding stop - 5 1382.0 0.0 3.8 0.0 0.0 0.0 -4,-6 0.0161 24 -2.0 MINOR ENSMUSG00000025375 Aatk ENSMUST00000103020 ENSMUSP00000099309 TRANSLATION protein_coding - CCDS25725.1 1 1317.0 19.0 6.43 0.1 208.8 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:2 ENSMUSG00000025375 Aatk ENSMUST00000142959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025375 Aatk ENSMUST00000150730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025375 Aatk ENSMUST00000134319 ENSMUSP00000159266 TRANSLATION protein_coding stop - 3 95.0 1.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000025375 Aatk ENSMUST00000128836 - NO_TRANSLATION retained_intron ENSMUSG00000025375 Aatk ENSMUST00000064307 ENSMUSP00000067181 TRANSLATION protein_coding - CCDS56826.1 1 1374.0 19.0 6.43 0.1 208.8 0.0 -2,-5 0.5448 14 14.0 ALTERNATIVE:2 ENSMUSG00000025375 Aatk ENSMUST00000103019 ENSMUSP00000099308 TRANSLATION protein_coding - CCDS25725.1 1 1317.0 19.0 6.43 0.1 208.8 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:2 ENSMUSG00000025375 Aatk ENSMUST00000132575 ENSMUSP00000159258 TRANSLATION protein_coding stop - 3 99.0 9.0 2.58 0.0 75.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025375 Aatk ENSMUST00000136386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025158 Rfng ENSMUST00000123273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025158 Rfng ENSMUST00000026156 ENSMUSP00000026156 TRANSLATION protein_coding - CCDS25757.1 1 332.0 9.0 6.5 0.1 377.5 0.0 1,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000057058 Skap1 ENSMUST00000123814 - NO_TRANSLATION retained_intron ENSMUSG00000057058 Skap1 ENSMUST00000136836 - NO_TRANSLATION retained_intron ENSMUSG00000057058 Skap1 ENSMUST00000149988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057058 Skap1 ENSMUST00000100519 ENSMUSP00000098088 TRANSLATION protein_coding - - 1 78.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000057058 Skap1 ENSMUST00000100521 ENSMUSP00000098090 TRANSLATION protein_coding - CCDS48892.1 1 345.0 7.0 5.348 0.0 71.2 0.0 -4,-5 0.0903 4 12.0 MINOR ENSMUSG00000057058 Skap1 ENSMUST00000127639 - NO_TRANSLATION retained_intron ENSMUSG00000057058 Skap1 ENSMUST00000103154 ENSMUSP00000099443 TRANSLATION protein_coding - CCDS25301.1 1 355.0 7.0 5.948 0.4 108.6 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000057058 Skap1 ENSMUST00000107662 ENSMUSP00000103289 TRANSLATION protein_coding - - 1 165.0 0.0 1.198 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000057058 Skap1 ENSMUST00000071510 ENSMUSP00000071445 TRANSLATION protein_coding - CCDS48891.1 1 339.0 7.0 5.948 0.1 108.6 0.0 -4,-5 0.2339 4 14.0 ALTERNATIVE:2 ENSMUSG00000057058 Skap1 ENSMUST00000107663 ENSMUSP00000103290 TRANSLATION protein_coding - - 3 126.0 0.0 1.198 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000019122 Ccl9 ENSMUST00000136131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019122 Ccl9 ENSMUST00000019266 ENSMUSP00000019266 TRANSLATION protein_coding - CCDS25170.1 1 122.0 0.0 2.0 0.1 61.0 0.0 2,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000018347 Zkscan6 ENSMUST00000071465 ENSMUSP00000071406 TRANSLATION protein_coding - CCDS24845.1 1 556.0 20.0 0.6 3.0 259.0 0.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000018347 Zkscan6 ENSMUST00000018491 ENSMUSP00000018491 TRANSLATION protein_coding - CCDS24845.1 1 556.0 20.0 0.6 3.0 259.0 0.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000020300 Cpeb4 ENSMUST00000155278 ENSMUSP00000116753 TRANSLATION protein_coding start - 1 392.0 8.0 5.8 0.0 192.3 0.0 -4,-2 0.0706 2 -2.0 MINOR ENSMUSG00000020300 Cpeb4 ENSMUST00000020543 ENSMUSP00000020543 TRANSLATION protein_coding - CCDS24514.1 1 729.0 8.0 5.8 10.0 192.3 0.0 -4,-6 1.0 5 19.876 MINOR ENSMUSG00000020300 Cpeb4 ENSMUST00000109412 ENSMUSP00000105039 TRANSLATION protein_coding - - 5 712.0 8.0 5.8 20.2 192.3 0.0 -4,-6 0.9931 4 22.0 PRINCIPAL:1 ENSMUSG00000078252 Krtap17-1 ENSMUST00000105049 ENSMUSP00000100670 TRANSLATION protein_coding - CCDS36330.1 - 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000100923 Or2y1b ENSMUST00000217290 ENSMUSP00000149724 TRANSLATION protein_coding - CCDS24605.1 5 311.0 0.0 1.0 9.3 162.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000100923 Or2y1b ENSMUST00000187570 ENSMUSP00000139744 TRANSLATION protein_coding - CCDS24605.1 - 311.0 0.0 1.0 9.3 162.0 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000006575 Rundc3a ENSMUST00000150982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006575 Rundc3a ENSMUST00000146330 - NO_TRANSLATION retained_intron ENSMUSG00000006575 Rundc3a ENSMUST00000131219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006575 Rundc3a ENSMUST00000006750 ENSMUSP00000006750 TRANSLATION protein_coding - CCDS25497.1 1 446.0 0.0 2.66 16.4 82.8 0.0 -4,-2 1.0 10 15.898 PRINCIPAL:1 ENSMUSG00000006575 Rundc3a ENSMUST00000107103 ENSMUSP00000102720 TRANSLATION protein_coding - - 5 400.0 0.0 2.66 7.1 84.2 0.0 -4,-2 0.594 7 13.584 MINOR ENSMUSG00000006575 Rundc3a ENSMUST00000107105 ENSMUSP00000102722 TRANSLATION protein_coding - CCDS56812.1 1 413.0 0.0 2.66 7.1 82.8 0.0 -4,-2 0.6258 8 13.482 MINOR ENSMUSG00000006575 Rundc3a ENSMUST00000107102 ENSMUSP00000102719 TRANSLATION protein_coding - - 5 405.0 0.0 2.66 7.1 82.8 0.0 -4,-2 0.4745 8 13.482 MINOR ENSMUSG00000006575 Rundc3a ENSMUST00000132876 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006575 Rundc3a ENSMUST00000128331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006575 Rundc3a ENSMUST00000142157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069476 Zfp616 ENSMUST00000116546 ENSMUSP00000112245 TRANSLATION protein_coding - - 1 98.0 0.0 1.6 0.0 87.6 0.0 -4,-5 0.0531 - 6.0 MINOR ENSMUSG00000069476 Zfp616 ENSMUST00000178159 ENSMUSP00000136549 TRANSLATION protein_coding - CCDS56793.1 - 987.0 75.0 1.0 0.0 403.6 0.0 -4,-5 1.0 - 15.75 PRINCIPAL:1 ENSMUSG00000069476 Zfp616 ENSMUST00000108463 ENSMUSP00000104103 TRANSLATION protein_coding stop - 5 485.0 0.0 1.6 0.0 87.6 0.0 -4,-5 0.0554 - -2.0 MINOR ENSMUSG00000069476 Zfp616 ENSMUST00000074813 ENSMUSP00000074365 TRANSLATION protein_coding - - 1 98.0 0.0 1.6 0.0 87.6 0.0 -4,-5 0.0531 - 6.0 MINOR ENSMUSG00000069476 Zfp616 ENSMUST00000137407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001240 Ramp2 ENSMUST00000107282 ENSMUSP00000102903 TRANSLATION protein_coding start/stop - 3 141.0 0.0 2.1 0.0 133.1 1.0 -4,-5 0.0477 2 -2.0 MINOR ENSMUSG00000001240 Ramp2 ENSMUST00000149585 ENSMUSP00000116331 TRANSLATION nonsense_mediated_decay - - 3 75.0 0.0 0.1 0.0 0.0 0.0 1,2 0.003 - -2.0 MINOR ENSMUSG00000001240 Ramp2 ENSMUST00000138229 - NO_TRANSLATION retained_intron ENSMUSG00000001240 Ramp2 ENSMUST00000122006 ENSMUSP00000114061 TRANSLATION protein_coding - - 2 105.0 0.0 1.1 0.0 0.0 0.0 1,2 0.0047 1 3.144 MINOR ENSMUSG00000001240 Ramp2 ENSMUST00000128260 ENSMUSP00000127718 TRANSLATION nonsense_mediated_decay - - 2 103.0 0.0 0.1 0.0 0.0 0.0 1,2 0.003 - -2.0 MINOR ENSMUSG00000001240 Ramp2 ENSMUST00000129680 ENSMUSP00000122072 TRANSLATION protein_coding - CCDS25457.1 1 189.0 0.0 2.1 0.1 133.1 1.0 1,2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000001240 Ramp2 ENSMUST00000149006 - NO_TRANSLATION retained_intron ENSMUSG00000001240 Ramp2 ENSMUST00000151830 ENSMUSP00000123150 TRANSLATION protein_coding stop - 3 81.0 0.0 0.6 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039096 Rsad1 ENSMUST00000040487 ENSMUSP00000037361 TRANSLATION protein_coding - CCDS25258.1 1 442.0 11.0 7.45 2.2 95.2 0.0 -4,-1 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000039096 Rsad1 ENSMUST00000148888 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039096 Rsad1 ENSMUST00000132274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039096 Rsad1 ENSMUST00000143299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020393 Kremen1 ENSMUST00000151978 ENSMUSP00000121252 TRANSLATION protein_coding start - 1 115.0 0.0 2.5 0.0 69.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020393 Kremen1 ENSMUST00000020662 ENSMUSP00000020662 TRANSLATION protein_coding - CCDS24399.1 1 473.0 0.0 5.459 0.4 196.8 0.0 2,-3 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000042302 Ehbp1 ENSMUST00000180360 ENSMUSP00000136697 TRANSLATION protein_coding - CCDS24469.1 5 1206.0 0.0 5.25 0.0 312.8 0.0 -4,-2 1.0 19 8.0 PRINCIPAL:2 ENSMUSG00000042302 Ehbp1 ENSMUST00000109563 ENSMUSP00000105191 TRANSLATION protein_coding - CCDS56762.1 1 1231.0 0.0 5.25 0.0 312.8 0.0 -4,-2 0.6773 20 8.0 ALTERNATIVE:2 ENSMUSG00000042302 Ehbp1 ENSMUST00000152372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042302 Ehbp1 ENSMUST00000045167 ENSMUSP00000037489 TRANSLATION protein_coding - CCDS24469.1 1 1206.0 0.0 5.25 0.0 312.8 0.0 -4,-2 1.0 19 8.0 PRINCIPAL:2 ENSMUSG00000042302 Ehbp1 ENSMUST00000136762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042302 Ehbp1 ENSMUST00000134293 ENSMUSP00000118583 TRANSLATION protein_coding stop - 5 308.0 0.0 0.0 0.0 94.4 0.0 -4,-2 0.0024 4 -2.0 MINOR ENSMUSG00000042302 Ehbp1 ENSMUST00000137594 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020692 Nle1 ENSMUST00000147915 - NO_TRANSLATION retained_intron ENSMUSG00000020692 Nle1 ENSMUST00000103213 ENSMUSP00000099502 TRANSLATION protein_coding - CCDS25152.1 1 485.0 0.0 11.83 1.8 270.7 0.0 -4,-5 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000020692 Nle1 ENSMUST00000124109 - NO_TRANSLATION retained_intron ENSMUSG00000020692 Nle1 ENSMUST00000140318 - NO_TRANSLATION retained_intron ENSMUSG00000020692 Nle1 ENSMUST00000126202 ENSMUSP00000130605 TRANSLATION nonsense_mediated_decay start - 5 57.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020692 Nle1 ENSMUST00000167196 ENSMUSP00000128341 TRANSLATION nonsense_mediated_decay start - 3 42.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020692 Nle1 ENSMUST00000170815 - NO_TRANSLATION retained_intron ENSMUSG00000015542 Nat9 ENSMUST00000103041 ENSMUSP00000099330 TRANSLATION protein_coding - CCDS25622.1 5 241.0 22.0 5.5 0.1 32.2 0.0 -4,-6 0.9871 7 18.0 PRINCIPAL:1 ENSMUSG00000015542 Nat9 ENSMUST00000153796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015542 Nat9 ENSMUST00000103040 ENSMUSP00000099329 TRANSLATION protein_coding - CCDS25622.1 1 241.0 22.0 5.5 0.1 32.2 0.0 -4,-6 0.9871 7 18.0 PRINCIPAL:1 ENSMUSG00000015542 Nat9 ENSMUST00000137843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015542 Nat9 ENSMUST00000103039 ENSMUSP00000099328 TRANSLATION protein_coding - CCDS25622.1 5 241.0 22.0 5.5 0.1 32.2 0.0 -4,-6 0.9871 7 18.0 PRINCIPAL:1 ENSMUSG00000015542 Nat9 ENSMUST00000134769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015542 Nat9 ENSMUST00000127419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015542 Nat9 ENSMUST00000103038 ENSMUSP00000099327 TRANSLATION protein_coding - CCDS25622.1 1 241.0 22.0 5.5 0.1 32.2 0.0 -4,-6 0.9871 7 18.0 PRINCIPAL:1 ENSMUSG00000015542 Nat9 ENSMUST00000134399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019437 Tlcd1 ENSMUST00000098545 ENSMUSP00000096145 TRANSLATION protein_coding - - 1 220.0 0.0 4.5 0.0 57.0 12.0 -2,-6 0.0081 1 9.33 MINOR ENSMUSG00000019437 Tlcd1 ENSMUST00000108338 ENSMUSP00000103975 TRANSLATION protein_coding - - 1 127.0 0.0 2.5 0.0 42.1 5.0 -2,-6 0.0059 - 4.068 MINOR ENSMUSG00000019437 Tlcd1 ENSMUST00000145507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019437 Tlcd1 ENSMUST00000092880 ENSMUSP00000090556 TRANSLATION protein_coding - CCDS70257.1 1 230.0 0.0 4.25 0.0 59.2 11.0 -4,-2 0.0384 3 9.018 MINOR ENSMUSG00000019437 Tlcd1 ENSMUST00000141578 - NO_TRANSLATION retained_intron ENSMUSG00000019437 Tlcd1 ENSMUST00000127587 ENSMUSP00000114202 TRANSLATION protein_coding - CCDS25092.1 1 247.0 0.0 5.25 1.1 70.8 14.0 -2,-6 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000019437 Tlcd1 ENSMUST00000147819 ENSMUSP00000126593 TRANSLATION protein_coding stop - 3 103.0 0.0 1.5 0.0 26.0 2.0 -4,-2 0.0025 - -2.0 MINOR ENSMUSG00000019437 Tlcd1 ENSMUST00000140379 - NO_TRANSLATION retained_intron ENSMUSG00000020267 Hint1 ENSMUST00000020504 ENSMUSP00000020504 TRANSLATION protein_coding - CCDS24702.1 1 126.0 18.0 3.0 0.0 107.2 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000020267 Hint1 ENSMUST00000117710 ENSMUSP00000114037 TRANSLATION protein_coding - - 2 119.0 15.0 2.1 0.0 54.5 0.0 -4,-5 0.0007 2 11.04 MINOR ENSMUSG00000019373 Cops3 ENSMUST00000133652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019373 Cops3 ENSMUST00000141415 ENSMUSP00000120305 TRANSLATION protein_coding stop - 2 106.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019373 Cops3 ENSMUST00000124101 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019373 Cops3 ENSMUST00000126489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019373 Cops3 ENSMUST00000019517 ENSMUSP00000019517 TRANSLATION protein_coding - CCDS24778.1 1 423.0 0.0 10.53 33.1 69.7 0.0 -4,-6 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000019373 Cops3 ENSMUST00000130027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019373 Cops3 ENSMUST00000156837 ENSMUSP00000117288 TRANSLATION protein_coding start/stop - 5 244.0 0.0 5.58 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000019373 Cops3 ENSMUST00000136901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005267 Zfp287 ENSMUST00000127732 - NO_TRANSLATION retained_intron ENSMUSG00000005267 Zfp287 ENSMUST00000185656 ENSMUSP00000141046 TRANSLATION protein_coding - CCDS24830.1 1 759.0 56.0 2.825 0.0 523.2 0.0 -4,-2 0.6549 - 14.0 ALTERNATIVE:2 ENSMUSG00000005267 Zfp287 ENSMUST00000150336 ENSMUSP00000121717 TRANSLATION protein_coding - - 1 297.0 0.0 1.825 0.0 197.0 0.0 -4,-2 0.0 - 3.876 MINOR ENSMUSG00000005267 Zfp287 ENSMUST00000149228 ENSMUSP00000114531 TRANSLATION nonsense_mediated_decay - CCDS24830.1 1 759.0 56.0 2.825 0.0 523.2 0.0 -4,-2 0.6549 - -2.0 MINOR ENSMUSG00000005267 Zfp287 ENSMUST00000128370 ENSMUSP00000117179 TRANSLATION protein_coding - - 1 274.0 0.0 1.825 0.0 197.0 0.0 -4,-5 0.0 - 3.876 MINOR ENSMUSG00000005267 Zfp287 ENSMUST00000005399 ENSMUSP00000005399 TRANSLATION protein_coding - - 1 748.0 56.0 2.825 0.0 523.2 0.0 -4,-5 0.8475 - 14.0 PRINCIPAL:4 ENSMUSG00000034121 Mks1 ENSMUST00000153729 - NO_TRANSLATION retained_intron ENSMUSG00000034121 Mks1 ENSMUST00000135369 - NO_TRANSLATION retained_intron ENSMUSG00000034121 Mks1 ENSMUST00000130135 - NO_TRANSLATION retained_intron ENSMUSG00000034121 Mks1 ENSMUST00000149256 - NO_TRANSLATION retained_intron ENSMUSG00000034121 Mks1 ENSMUST00000038196 ENSMUSP00000043790 TRANSLATION protein_coding - CCDS36271.1 1 561.0 0.0 1.5625 11.0 157.7 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000018776 Slc35g3 ENSMUST00000102586 ENSMUSP00000099646 TRANSLATION protein_coding - - 1 340.0 0.0 1.0 3.8 0.0 8.0 -4,-6 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000018776 Slc35g3 ENSMUST00000231829 ENSMUSP00000156297 TRANSLATION protein_coding - CCDS24908.1 - 362.0 0.0 1.0 0.3 0.0 8.0 -4,-5 0.4254 - 6.0 ALTERNATIVE:2 ENSMUSG00000017309 Cd300lg ENSMUST00000123895 ENSMUSP00000120921 TRANSLATION protein_coding stop - 5 251.0 0.0 1.0 0.0 47.1 2.0 1,-3 0.129 3 -2.0 MINOR ENSMUSG00000017309 Cd300lg ENSMUST00000017453 ENSMUSP00000017453 TRANSLATION protein_coding - CCDS25484.1 1 287.0 0.0 1.0 1.4 47.1 2.0 1,-3 1.0 3 8.454 PRINCIPAL:2 ENSMUSG00000017309 Cd300lg ENSMUST00000107163 ENSMUSP00000102781 TRANSLATION protein_coding - CCDS48940.1 1 371.0 0.0 1.1 0.1 47.1 2.0 1,-3 0.5736 3 8.0 ALTERNATIVE:2 ENSMUSG00000017309 Cd300lg ENSMUST00000107164 ENSMUSP00000102782 TRANSLATION protein_coding - CCDS48939.1 1 415.0 0.0 1.1 0.1 47.1 2.0 1,-3 0.5727 3 8.0 ALTERNATIVE:2 ENSMUSG00000017167 Cntnap1 ENSMUST00000103109 ENSMUSP00000099398 TRANSLATION protein_coding - CCDS25455.1 1 1385.0 0.0 6.176 7.8 365.5 0.0 3,-2 1.0 31 14.0 PRINCIPAL:1 ENSMUSG00000017167 Cntnap1 ENSMUST00000138942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004668 Abca13 ENSMUST00000151522 ENSMUSP00000116819 TRANSLATION protein_coding stop - 5 137.0 0.0 1.1 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000004668 Abca13 ENSMUST00000141233 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004668 Abca13 ENSMUST00000042740 ENSMUSP00000040465 TRANSLATION protein_coding - CCDS36110.1 5 5034.0 21.0 18.037 0.0 351.4 0.0 -4,-7 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000059729 Or2y1 ENSMUST00000071807 ENSMUSP00000071710 TRANSLATION protein_coding - CCDS24612.1 - 309.0 0.0 1.0 8.6 157.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059729 Or2y1 ENSMUST00000216450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059729 Or2y1 ENSMUST00000214948 ENSMUSP00000150035 TRANSLATION protein_coding - CCDS24612.1 5 309.0 0.0 1.0 8.6 157.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018907 Alox12e ENSMUST00000123752 - NO_TRANSLATION retained_intron ENSMUSG00000018907 Alox12e ENSMUST00000019051 ENSMUSP00000019051 TRANSLATION protein_coding - CCDS24943.1 1 662.0 4.0 13.5 11.0 68.5 0.0 -4,-7 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000018907 Alox12e ENSMUST00000149060 - NO_TRANSLATION retained_intron ENSMUSG00000018907 Alox12e ENSMUST00000139899 - NO_TRANSLATION retained_intron ENSMUSG00000020295 Hbq1a ENSMUST00000020535 ENSMUSP00000020535 TRANSLATION protein_coding - CCDS24525.1 1 145.0 20.0 2.8 0.0 80.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000018217 Pmp22 ENSMUST00000108700 ENSMUSP00000104340 TRANSLATION protein_coding - CCDS24837.1 1 160.0 0.0 3.35 23.4 163.2 3.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000018217 Pmp22 ENSMUST00000108702 ENSMUSP00000104342 TRANSLATION protein_coding - CCDS24837.1 3 160.0 0.0 3.35 23.4 163.2 3.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000018217 Pmp22 ENSMUST00000108701 ENSMUSP00000104341 TRANSLATION protein_coding - CCDS24837.1 3 160.0 0.0 3.35 23.4 163.2 3.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000018217 Pmp22 ENSMUST00000140648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018217 Pmp22 ENSMUST00000018361 ENSMUSP00000018361 TRANSLATION protein_coding - CCDS24837.1 1 160.0 0.0 3.35 23.4 163.2 3.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000000976 Heatr6 ENSMUST00000136572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000976 Heatr6 ENSMUST00000125831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000976 Heatr6 ENSMUST00000001002 ENSMUSP00000001002 TRANSLATION protein_coding - CCDS36259.1 1 1184.0 0.0 0.0 3.8 235.5 0.0 -4,-7 1.0 17 7.0 PRINCIPAL:1 ENSMUSG00000000976 Heatr6 ENSMUST00000127428 - NO_TRANSLATION retained_intron ENSMUSG00000000976 Heatr6 ENSMUST00000125602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020354 Sgcd ENSMUST00000109220 ENSMUSP00000104843 TRANSLATION protein_coding - - 5 192.0 0.0 4.55 0.0 167.7 1.0 -4,-7 0.0015 7 3.12 MINOR ENSMUSG00000020354 Sgcd ENSMUST00000154578 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020354 Sgcd ENSMUST00000077221 ENSMUSP00000076459 TRANSLATION protein_coding - CCDS24584.1 1 289.0 0.0 6.15 34.9 262.4 1.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000020354 Sgcd ENSMUST00000128558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020827 Mink1 ENSMUST00000152857 - NO_TRANSLATION retained_intron ENSMUSG00000020827 Mink1 ENSMUST00000102558 ENSMUSP00000099618 TRANSLATION protein_coding - CCDS24954.1 1 1300.0 19.0 14.93 6.6 402.5 0.0 -4,-5 0.9387 16 15.672 ALTERNATIVE:1 ENSMUSG00000020827 Mink1 ENSMUST00000142650 - NO_TRANSLATION retained_intron ENSMUSG00000020827 Mink1 ENSMUST00000072873 ENSMUSP00000072649 TRANSLATION protein_coding - CCDS36205.1 5 1337.0 19.0 14.93 6.6 402.5 0.0 -4,-5 0.9396 18 15.672 ALTERNATIVE:1 ENSMUSG00000020827 Mink1 ENSMUST00000178764 ENSMUSP00000136149 TRANSLATION protein_coding start/stop - 3 259.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 5 -2.0 MINOR ENSMUSG00000020827 Mink1 ENSMUST00000132208 - NO_TRANSLATION retained_intron ENSMUSG00000020827 Mink1 ENSMUST00000102559 ENSMUSP00000099619 TRANSLATION protein_coding - CCDS24955.1 1 1308.0 19.0 14.93 7.7 402.5 0.0 -4,-5 1.0 17 16.0 ALTERNATIVE:1 ENSMUSG00000020827 Mink1 ENSMUST00000072237 ENSMUSP00000072091 TRANSLATION protein_coding - CCDS48837.1 5 1344.0 19.0 14.93 6.7 402.5 0.0 -4,-5 0.92 19 15.702 PRINCIPAL:3 ENSMUSG00000020827 Mink1 ENSMUST00000133310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020827 Mink1 ENSMUST00000153503 - NO_TRANSLATION retained_intron ENSMUSG00000020827 Mink1 ENSMUST00000149845 ENSMUSP00000137075 TRANSLATION nonsense_mediated_decay start - 5 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020827 Mink1 ENSMUST00000136663 ENSMUSP00000117959 TRANSLATION protein_coding start - 1 1198.0 4.0 10.95 0.0 298.0 0.0 -4,-5 0.0151 18 -2.0 MINOR ENSMUSG00000020827 Mink1 ENSMUST00000079244 ENSMUSP00000078234 TRANSLATION protein_coding - - 1 1334.0 19.0 14.93 5.5 402.5 0.0 -4,-5 0.7351 18 15.344 ALTERNATIVE:1 ENSMUSG00000020873 Slc35b1 ENSMUST00000141284 - NO_TRANSLATION retained_intron ENSMUSG00000020873 Slc35b1 ENSMUST00000131193 ENSMUSP00000125307 TRANSLATION nonsense_mediated_decay - - 1 156.0 0.0 0.68 0.0 0.0 2.0 -4,-7 0.0029 1 -2.0 MINOR ENSMUSG00000020873 Slc35b1 ENSMUST00000021243 ENSMUSP00000021243 TRANSLATION protein_coding - CCDS25277.1 1 322.0 0.0 4.075 1.1 189.6 8.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000020873 Slc35b1 ENSMUST00000146556 ENSMUSP00000125597 TRANSLATION protein_coding stop - 3 153.0 0.0 1.53 0.0 70.9 2.0 -4,-6 0.0026 - -2.0 MINOR ENSMUSG00000020873 Slc35b1 ENSMUST00000143090 - NO_TRANSLATION retained_intron ENSMUSG00000020700 Map3k3 ENSMUST00000129793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020700 Map3k3 ENSMUST00000002044 ENSMUSP00000002044 TRANSLATION protein_coding - CCDS25548.1 1 626.0 20.0 5.82 11.4 272.9 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000020700 Map3k3 ENSMUST00000124449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051790 Nlgn2 ENSMUST00000108634 ENSMUSP00000104274 TRANSLATION protein_coding - CCDS24914.1 1 836.0 6.0 6.205 6.2 641.5 1.0 2,-3 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000051790 Nlgn2 ENSMUST00000140477 - NO_TRANSLATION retained_intron ENSMUSG00000051790 Nlgn2 ENSMUST00000139893 ENSMUSP00000120428 TRANSLATION protein_coding start/stop - 2 262.0 4.0 4.0 0.0 371.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000051790 Nlgn2 ENSMUST00000056484 ENSMUSP00000053097 TRANSLATION protein_coding - CCDS24914.1 1 836.0 6.0 6.205 6.2 641.5 1.0 2,-3 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000017607 Tns4 ENSMUST00000153351 - NO_TRANSLATION retained_intron ENSMUSG00000017607 Tns4 ENSMUST00000123303 - NO_TRANSLATION retained_intron ENSMUSG00000017607 Tns4 ENSMUST00000107465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017607 Tns4 ENSMUST00000017751 ENSMUSP00000017751 TRANSLATION protein_coding - CCDS25372.1 1 696.0 0.0 6.016 0.3 132.9 0.0 -4,-6 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000020553 Pctp ENSMUST00000020864 ENSMUSP00000020864 TRANSLATION protein_coding - CCDS25238.1 1 214.0 0.0 5.25 9.9 141.5 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000097487 Ptges3l ENSMUST00000103102 ENSMUSP00000099391 TRANSLATION protein_coding - CCDS25468.1 1 131.0 0.0 3.83 0.0 0.0 0.0 -4,-6 0.0774 - 4.998 MINOR ENSMUSG00000097487 Ptges3l ENSMUST00000150957 - NO_TRANSLATION retained_intron ENSMUSG00000097487 Ptges3l ENSMUST00000093933 ENSMUSP00000091465 TRANSLATION protein_coding - - 1 140.0 0.0 3.83 0.0 0.0 0.0 -4,-6 0.007 - 4.998 MINOR ENSMUSG00000097487 Ptges3l ENSMUST00000107252 ENSMUSP00000102873 TRANSLATION protein_coding - - 1 149.0 0.0 4.33 4.0 0.0 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000097487 Ptges3l ENSMUST00000149706 ENSMUSP00000116399 TRANSLATION protein_coding start - 5 67.0 0.0 1.816 0.0 0.0 0.0 -4,-7 0.0094 - -2.0 MINOR ENSMUSG00000000581 C1d ENSMUST00000130330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000581 C1d ENSMUST00000156784 ENSMUSP00000121134 TRANSLATION protein_coding stop - 2 118.0 0.0 3.25 0.0 66.5 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000000581 C1d ENSMUST00000135568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000581 C1d ENSMUST00000000594 ENSMUSP00000000594 TRANSLATION protein_coding - CCDS24451.1 1 141.0 0.0 4.0 17.5 66.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000000581 C1d ENSMUST00000131227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020435 Osbp2 ENSMUST00000135250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020435 Osbp2 ENSMUST00000155197 ENSMUSP00000116490 TRANSLATION protein_coding stop - 2 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020435 Osbp2 ENSMUST00000070552 ENSMUSP00000068652 TRANSLATION protein_coding - CCDS24367.1 5 908.0 0.0 5.62 0.0 522.5 0.0 -3,0 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000020435 Osbp2 ENSMUST00000102950 ENSMUSP00000100015 TRANSLATION protein_coding - CCDS78912.1 1 455.0 0.0 5.22 2.2 475.5 0.0 -4,-5 0.5792 6 9.382 MINOR ENSMUSG00000020435 Osbp2 ENSMUST00000127371 ENSMUSP00000116361 TRANSLATION protein_coding stop - 3 155.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020435 Osbp2 ENSMUST00000101632 ENSMUSP00000099156 TRANSLATION protein_coding - - 5 497.0 0.0 5.22 0.0 475.5 0.0 -4,-6 0.03 6 8.382 MINOR ENSMUSG00000015869 Prpsap1 ENSMUST00000140917 - NO_TRANSLATION retained_intron ENSMUSG00000015869 Prpsap1 ENSMUST00000130835 - NO_TRANSLATION retained_intron ENSMUSG00000015869 Prpsap1 ENSMUST00000106391 ENSMUSP00000101999 TRANSLATION protein_coding - CCDS48985.1 1 385.0 13.0 6.46 12.8 464.8 0.0 -1,2 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000015869 Prpsap1 ENSMUST00000142480 - NO_TRANSLATION retained_intron ENSMUSG00000015869 Prpsap1 ENSMUST00000135196 ENSMUSP00000119576 TRANSLATION protein_coding stop - 3 195.0 3.0 3.85 0.0 128.5 0.0 -1,2 0.0001 5 -2.0 MINOR ENSMUSG00000015869 Prpsap1 ENSMUST00000152874 ENSMUSP00000159518 TRANSLATION nonsense_mediated_decay - - 1 165.0 1.0 2.982 0.0 131.0 0.0 -1,2 0.0 5 -2.0 MINOR ENSMUSG00000015869 Prpsap1 ENSMUST00000152496 ENSMUSP00000115982 TRANSLATION protein_coding - - 3 349.0 13.0 6.01 2.2 450.8 0.0 -4,-7 0.0824 8 16.566 MINOR ENSMUSG00000015869 Prpsap1 ENSMUST00000147858 - NO_TRANSLATION retained_intron ENSMUSG00000015869 Prpsap1 ENSMUST00000144154 - NO_TRANSLATION retained_intron ENSMUSG00000046275 Trarg1 ENSMUST00000062024 ENSMUSP00000061634 TRANSLATION protein_coding - CCDS25069.1 1 173.0 0.0 0.0 7.0 75.3 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000046909 Tefm ENSMUST00000050207 ENSMUSP00000059304 TRANSLATION protein_coding - CCDS36241.1 1 364.0 0.0 3.63 0.4 35.6 0.0 -4,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000046909 Tefm ENSMUST00000136996 ENSMUSP00000122596 TRANSLATION protein_coding start - 3 56.0 0.0 0.5 0.0 0.0 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000046909 Tefm ENSMUST00000131601 ENSMUSP00000114770 TRANSLATION protein_coding stop - 5 221.0 0.0 2.3 0.0 35.6 0.0 -4,-7 0.0111 5 -2.0 MINOR ENSMUSG00000008855 Hdac5 ENSMUST00000124077 ENSMUSP00000116672 TRANSLATION nonsense_mediated_decay - - 1 64.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008855 Hdac5 ENSMUST00000131254 ENSMUSP00000118108 TRANSLATION protein_coding stop - 3 158.0 0.0 1.2 0.0 114.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000008855 Hdac5 ENSMUST00000156337 ENSMUSP00000116646 TRANSLATION protein_coding stop - 5 175.0 0.0 1.2 0.0 114.4 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000008855 Hdac5 ENSMUST00000107150 ENSMUSP00000102768 TRANSLATION protein_coding - CCDS70321.1 1 1102.0 12.0 11.83 0.0 380.7 0.0 -4,-5 0.3831 17 18.0 MINOR ENSMUSG00000008855 Hdac5 ENSMUST00000150965 - NO_TRANSLATION retained_intron ENSMUSG00000008855 Hdac5 ENSMUST00000136304 - NO_TRANSLATION retained_intron ENSMUSG00000008855 Hdac5 ENSMUST00000140962 ENSMUSP00000115435 TRANSLATION protein_coding start/stop - 5 142.0 0.0 1.88 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000008855 Hdac5 ENSMUST00000155065 - NO_TRANSLATION retained_intron ENSMUSG00000008855 Hdac5 ENSMUST00000125072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008855 Hdac5 ENSMUST00000126453 - NO_TRANSLATION retained_intron ENSMUSG00000008855 Hdac5 ENSMUST00000149087 - NO_TRANSLATION retained_intron ENSMUSG00000008855 Hdac5 ENSMUST00000140481 - NO_TRANSLATION retained_intron ENSMUSG00000008855 Hdac5 ENSMUST00000107151 ENSMUSP00000102769 TRANSLATION protein_coding - - 5 1030.0 9.0 9.83 0.0 355.7 0.0 -4,-5 0.0114 14 10.5 MINOR ENSMUSG00000008855 Hdac5 ENSMUST00000128686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008855 Hdac5 ENSMUST00000137787 - NO_TRANSLATION retained_intron ENSMUSG00000008855 Hdac5 ENSMUST00000145540 - NO_TRANSLATION retained_intron ENSMUSG00000008855 Hdac5 ENSMUST00000107152 ENSMUSP00000102770 TRANSLATION protein_coding - CCDS36341.1 1 1115.0 12.0 11.83 8.1 380.7 0.0 -4,-5 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000008855 Hdac5 ENSMUST00000008999 ENSMUSP00000008999 TRANSLATION protein_coding - CCDS70320.1 1 1121.0 12.0 11.83 3.9 380.7 0.0 -4,-6 0.7832 17 19.224 MINOR ENSMUSG00000008855 Hdac5 ENSMUST00000133651 - NO_TRANSLATION retained_intron ENSMUSG00000008855 Hdac5 ENSMUST00000150683 - NO_TRANSLATION retained_intron ENSMUSG00000070374 Or1p1 ENSMUST00000143976 ENSMUSP00000119877 TRANSLATION protein_coding - CCDS25029.1 3 323.0 0.0 2.0 1.2 197.7 8.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000070374 Or1p1 ENSMUST00000214048 ENSMUSP00000148959 TRANSLATION protein_coding - CCDS25029.1 2 323.0 0.0 2.0 1.2 197.7 8.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000070374 Or1p1 ENSMUST00000205790 ENSMUSP00000146212 TRANSLATION protein_coding stop - 3 183.0 0.0 1.0 0.0 101.8 6.0 -4,-6 0.0058 - -2.0 MINOR ENSMUSG00000070374 Or1p1 ENSMUST00000206659 ENSMUSP00000146176 TRANSLATION protein_coding stop - 3 182.0 0.0 1.0 0.0 101.8 6.0 -4,-6 0.0058 - -2.0 MINOR ENSMUSG00000020315 Sptbn1 ENSMUST00000006629 ENSMUSP00000006629 TRANSLATION protein_coding - CCDS36123.1 5 2363.0 0.0 24.538 24.8 1406.4 0.0 -4,-5 1.0 133 16.0 PRINCIPAL:1 ENSMUSG00000020315 Sptbn1 ENSMUST00000127209 - NO_TRANSLATION retained_intron ENSMUSG00000020315 Sptbn1 ENSMUST00000102838 ENSMUSP00000099902 TRANSLATION protein_coding - CCDS24506.1 1 2154.0 0.0 21.938 9.5 1328.8 0.0 -4,-5 0.4436 120 3.57 MINOR ENSMUSG00000020315 Sptbn1 ENSMUST00000133466 - NO_TRANSLATION retained_intron ENSMUSG00000020315 Sptbn1 ENSMUST00000145315 - NO_TRANSLATION retained_intron ENSMUSG00000020315 Sptbn1 ENSMUST00000011877 ENSMUSP00000011877 TRANSLATION protein_coding - CCDS36123.1 1 2363.0 0.0 24.538 24.8 1406.4 0.0 -4,-5 1.0 133 16.0 PRINCIPAL:1 ENSMUSG00000020315 Sptbn1 ENSMUST00000124231 ENSMUSP00000114841 TRANSLATION protein_coding stop - 1 2092.0 0.0 22.338 0.0 1328.4 0.0 -4,-5 0.1773 117 -2.0 MINOR ENSMUSG00000020315 Sptbn1 ENSMUST00000149117 - NO_TRANSLATION retained_intron ENSMUSG00000018921 Pelp1 ENSMUST00000135148 ENSMUSP00000134014 TRANSLATION protein_coding - - 1 164.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 1 0.0 MINOR ENSMUSG00000018921 Pelp1 ENSMUST00000019065 ENSMUSP00000019065 TRANSLATION protein_coding - CCDS24945.1 1 1123.0 0.0 0.0 0.0 241.9 0.0 -2,-5 1.0 17 6.0 PRINCIPAL:1 ENSMUSG00000078605 E030025P04Rik ENSMUST00000106710 ENSMUSP00000102321 TRANSLATION protein_coding - - 1 185.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5824 - 0.0 PRINCIPAL:1 ENSMUSG00000057948 Unc13d ENSMUST00000106450 ENSMUSP00000102058 TRANSLATION protein_coding - - 5 1085.0 11.0 4.9215 4.1 138.2 0.0 -4,0 0.8379 17 14.0 ALTERNATIVE:2 ENSMUSG00000057948 Unc13d ENSMUST00000106451 ENSMUSP00000102059 TRANSLATION protein_coding - - 5 1085.0 11.0 4.9215 4.1 138.2 0.0 -4,0 0.8379 17 14.0 ALTERNATIVE:2 ENSMUSG00000057948 Unc13d ENSMUST00000173943 - NO_TRANSLATION retained_intron ENSMUSG00000057948 Unc13d ENSMUST00000156545 ENSMUSP00000118266 TRANSLATION protein_coding stop - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 1 -2.0 MINOR ENSMUSG00000057948 Unc13d ENSMUST00000075036 ENSMUSP00000074549 TRANSLATION protein_coding - CCDS25656.1 5 1083.0 11.0 4.9215 4.1 138.2 0.0 -4,0 1.0 17 14.0 PRINCIPAL:4 ENSMUSG00000057948 Unc13d ENSMUST00000173345 ENSMUSP00000133679 TRANSLATION nonsense_mediated_decay - - 1 834.0 5.0 2.5965 0.0 42.8 0.0 -4,0 0.0067 14 -2.0 MINOR ENSMUSG00000057948 Unc13d ENSMUST00000174822 ENSMUSP00000134260 TRANSLATION protein_coding - CCDS25656.1 1 1083.0 11.0 4.9215 4.1 138.2 0.0 -4,0 1.0 17 14.0 PRINCIPAL:4 ENSMUSG00000057948 Unc13d ENSMUST00000153408 ENSMUSP00000115327 TRANSLATION protein_coding stop - 3 117.0 0.0 0.273 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057948 Unc13d ENSMUST00000155120 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025576 Rbfox3 ENSMUST00000128863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025576 Rbfox3 ENSMUST00000069343 ENSMUSP00000069598 TRANSLATION protein_coding - CCDS70358.1 1 329.0 0.0 2.45 0.0 155.2 0.0 -4,-5 0.0216 4 4.002 MINOR ENSMUSG00000025576 Rbfox3 ENSMUST00000017576 ENSMUSP00000017576 TRANSLATION protein_coding - CCDS25706.1 1 374.0 0.0 3.45 0.0 202.9 0.0 -4,-5 0.1444 6 7.2 MINOR ENSMUSG00000025576 Rbfox3 ENSMUST00000117731 ENSMUSP00000113636 TRANSLATION protein_coding - CCDS70360.1 1 360.0 0.0 3.45 0.0 202.9 0.0 -4,-5 0.1435 6 7.2 MINOR ENSMUSG00000025576 Rbfox3 ENSMUST00000103023 ENSMUSP00000099312 TRANSLATION protein_coding - CCDS25705.1 1 313.0 0.0 3.45 3.0 207.3 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:2 ENSMUSG00000025576 Rbfox3 ENSMUST00000136551 ENSMUSP00000119255 TRANSLATION protein_coding stop - 5 169.0 0.0 2.5 0.0 69.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025576 Rbfox3 ENSMUST00000120061 ENSMUSP00000113987 TRANSLATION protein_coding - - 5 327.0 0.0 3.45 3.0 207.3 0.0 -4,-5 0.6602 5 9.0 ALTERNATIVE:2 ENSMUSG00000025576 Rbfox3 ENSMUST00000106278 ENSMUSP00000101885 TRANSLATION protein_coding - CCDS25705.1 1 313.0 0.0 3.45 3.0 207.3 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:2 ENSMUSG00000025576 Rbfox3 ENSMUST00000154746 ENSMUSP00000118332 TRANSLATION protein_coding stop - 3 145.0 0.0 2.45 0.0 127.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025576 Rbfox3 ENSMUST00000134774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017561 Crlf3 ENSMUST00000147164 - NO_TRANSLATION retained_intron ENSMUSG00000017561 Crlf3 ENSMUST00000178280 - NO_TRANSLATION retained_intron ENSMUSG00000017561 Crlf3 ENSMUST00000178893 ENSMUSP00000137371 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.011 1 -2.0 MINOR ENSMUSG00000017561 Crlf3 ENSMUST00000061283 ENSMUSP00000060028 TRANSLATION protein_coding - CCDS25126.1 1 442.0 0.0 5.5 5.5 0.0 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000017561 Crlf3 ENSMUST00000103233 ENSMUSP00000099523 TRANSLATION protein_coding - CCDS70260.1 1 344.0 2.0 3.67 0.1 0.0 0.0 -4,-5 0.0869 3 4.34 MINOR ENSMUSG00000017561 Crlf3 ENSMUST00000092858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017561 Crlf3 ENSMUST00000179855 ENSMUSP00000137124 TRANSLATION nonsense_mediated_decay start - 3 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0146 1 -2.0 MINOR ENSMUSG00000017561 Crlf3 ENSMUST00000177825 ENSMUSP00000136473 TRANSLATION nonsense_mediated_decay - - 5 168.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0366 2 -2.0 MINOR ENSMUSG00000018446 C1qbp ENSMUST00000155371 - NO_TRANSLATION retained_intron ENSMUSG00000018446 C1qbp ENSMUST00000078528 ENSMUSP00000077612 TRANSLATION protein_coding - CCDS24970.1 1 279.0 0.0 2.5 10.1 145.3 0.0 -2,1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000018446 C1qbp ENSMUST00000179291 - NO_TRANSLATION retained_intron ENSMUSG00000007646 Rad51c ENSMUST00000153073 ENSMUSP00000122811 TRANSLATION nonsense_mediated_decay - - 1 338.0 6.0 3.7 0.0 131.6 0.0 -4,-7 0.0035 2 -2.0 MINOR ENSMUSG00000007646 Rad51c ENSMUST00000129400 ENSMUSP00000121928 TRANSLATION nonsense_mediated_decay - - 5 125.0 6.0 1.0 0.7 29.8 0.0 -4,-7 0.0223 - -2.0 MINOR ENSMUSG00000007646 Rad51c ENSMUST00000007790 ENSMUSP00000007790 TRANSLATION protein_coding - CCDS79013.1 1 384.0 6.0 3.5 0.0 148.5 0.0 -3,-1 0.095 4 16.998 MINOR ENSMUSG00000007646 Rad51c ENSMUST00000067692 ENSMUSP00000064079 TRANSLATION protein_coding - CCDS25212.1 1 366.0 6.0 4.0 3.7 148.5 0.0 -4,-7 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000101750 Or2y1f ENSMUST00000215861 ENSMUSP00000150526 TRANSLATION protein_coding - CCDS24604.1 5 311.0 0.0 1.0 10.4 152.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101750 Or2y1f ENSMUST00000189851 ENSMUSP00000140904 TRANSLATION protein_coding - CCDS24604.1 - 311.0 0.0 1.0 10.4 152.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101750 Or2y1f ENSMUST00000214170 ENSMUSP00000149127 TRANSLATION protein_coding - CCDS24604.1 5 311.0 0.0 1.0 10.4 152.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101750 Or2y1f ENSMUST00000214598 ENSMUSP00000150516 TRANSLATION protein_coding - CCDS24604.1 5 311.0 0.0 1.0 10.4 152.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000101750 Or2y1f ENSMUST00000213684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101750 Or2y1f ENSMUST00000214516 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101750 Or2y1f ENSMUST00000217275 ENSMUSP00000149746 TRANSLATION protein_coding - CCDS24604.1 5 311.0 0.0 1.0 10.4 152.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020492 Ska2 ENSMUST00000131202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020492 Ska2 ENSMUST00000020794 ENSMUSP00000020794 TRANSLATION protein_coding - CCDS25209.1 1 120.0 0.0 2.83 10.2 121.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020492 Ska2 ENSMUST00000142263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000107677 Or2ak4 ENSMUST00000215071 ENSMUSP00000151136 TRANSLATION protein_coding - CCDS24743.1 5 306.0 0.0 1.0 3.0 154.7 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000107677 Or2ak4 ENSMUST00000203731 ENSMUSP00000145187 TRANSLATION protein_coding - CCDS24743.1 - 306.0 0.0 1.0 3.0 154.7 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000087279 4930544D05Rik ENSMUST00000180052 ENSMUSP00000137259 TRANSLATION protein_coding - - 5 214.0 0.0 0.0 0.4 0.0 0.0 -4,-6 0.6124 - 0.0 PRINCIPAL:2 ENSMUSG00000087279 4930544D05Rik ENSMUST00000144960 ENSMUSP00000136077 TRANSLATION protein_coding - CCDS56785.1 5 171.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.1826 1 0.0 ALTERNATIVE:2 ENSMUSG00000087279 4930544D05Rik ENSMUST00000135865 ENSMUSP00000135933 TRANSLATION nonsense_mediated_decay - - 3 125.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.028 - -2.0 MINOR ENSMUSG00000087279 4930544D05Rik ENSMUST00000125387 - NO_TRANSLATION retained_intron ENSMUSG00000075570 Krt26 ENSMUST00000148770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075570 Krt26 ENSMUST00000100482 ENSMUSP00000098051 TRANSLATION protein_coding - CCDS25378.1 1 462.0 0.0 3.85 10.7 305.8 0.0 -3,1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000063251 Krtap4-1 ENSMUST00000081007 ENSMUSP00000079799 TRANSLATION protein_coding - CCDS36316.1 - 169.0 0.0 0.0 0.8 50.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000034341 Wbp2 ENSMUST00000129532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034341 Wbp2 ENSMUST00000074628 ENSMUSP00000074204 TRANSLATION protein_coding - CCDS25657.1 1 261.0 0.0 4.15 21.0 55.9 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000034341 Wbp2 ENSMUST00000145278 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034341 Wbp2 ENSMUST00000106444 ENSMUSP00000102052 TRANSLATION protein_coding - CCDS83934.1 2 216.0 0.0 3.75 6.0 55.9 0.0 -4,-5 0.266 6 12.202 MINOR ENSMUSG00000034341 Wbp2 ENSMUST00000146339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020377 Ltc4s ENSMUST00000101265 ENSMUSP00000098823 TRANSLATION protein_coding - CCDS83799.1 1 113.0 6.0 3.33 0.1 59.6 0.0 -2,-4 0.0884 1 16.002 MINOR ENSMUSG00000020377 Ltc4s ENSMUST00000221081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020377 Ltc4s ENSMUST00000221391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020377 Ltc4s ENSMUST00000125555 ENSMUSP00000121584 TRANSLATION protein_coding stop - 1 178.0 0.0 0.75 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000020377 Ltc4s ENSMUST00000222076 - NO_TRANSLATION retained_intron ENSMUSG00000020377 Ltc4s ENSMUST00000221525 ENSMUSP00000152524 TRANSLATION protein_coding stop - 3 141.0 0.0 0.75 0.0 0.0 0.0 -3,-4 0.0004 - -2.0 MINOR ENSMUSG00000020377 Ltc4s ENSMUST00000102772 ENSMUSP00000099833 TRANSLATION protein_coding - CCDS24631.1 1 150.0 6.0 4.33 7.9 57.1 1.0 -2,-4 1.0 1 19.748 PRINCIPAL:1 ENSMUSG00000025145 Lrrc45 ENSMUST00000155187 - NO_TRANSLATION retained_intron ENSMUSG00000025145 Lrrc45 ENSMUST00000151852 ENSMUSP00000115298 TRANSLATION protein_coding stop - 5 162.0 0.0 3.5 0.0 34.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025145 Lrrc45 ENSMUST00000145781 ENSMUSP00000123038 TRANSLATION nonsense_mediated_decay - - 5 423.0 0.0 10.25 0.0 56.4 0.0 -4,-5 0.0253 9 -2.0 MINOR ENSMUSG00000025145 Lrrc45 ENSMUST00000026139 ENSMUSP00000026139 TRANSLATION protein_coding - CCDS25753.1 1 670.0 0.0 10.25 9.4 56.4 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000025145 Lrrc45 ENSMUST00000150225 - NO_TRANSLATION retained_intron ENSMUSG00000025571 Tnrc6c ENSMUST00000141115 - NO_TRANSLATION retained_intron ENSMUSG00000025571 Tnrc6c ENSMUST00000140347 - NO_TRANSLATION retained_intron ENSMUSG00000025571 Tnrc6c ENSMUST00000026658 ENSMUSP00000026658 TRANSLATION protein_coding - CCDS36381.1 5 1900.0 0.0 3.95 0.0 707.5 0.0 -4,-5 1.0 23 11.91 PRINCIPAL:1 ENSMUSG00000025571 Tnrc6c ENSMUST00000141287 - NO_TRANSLATION retained_intron ENSMUSG00000025571 Tnrc6c ENSMUST00000138299 ENSMUSP00000115221 TRANSLATION protein_coding start - 1 1732.0 0.0 3.95 0.0 709.0 0.0 -4,-5 0.4095 23 -2.0 MINOR ENSMUSG00000025571 Tnrc6c ENSMUST00000106344 ENSMUSP00000101951 TRANSLATION protein_coding - CCDS36381.1 5 1900.0 0.0 3.95 0.0 707.5 0.0 -4,-5 1.0 23 11.91 PRINCIPAL:1 ENSMUSG00000036309 Skp1 ENSMUST00000109072 ENSMUSP00000104700 TRANSLATION protein_coding - CCDS24669.1 5 163.0 0.0 4.49 36.9 207.7 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000036309 Skp1 ENSMUST00000037324 ENSMUSP00000038744 TRANSLATION protein_coding - CCDS24669.1 1 163.0 0.0 4.49 36.9 207.7 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000036309 Skp1 ENSMUST00000093121 - NO_TRANSLATION retained_intron ENSMUSG00000036309 Skp1 ENSMUST00000166537 ENSMUSP00000131833 TRANSLATION protein_coding stop - 3 96.0 0.0 2.83 0.0 151.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036309 Skp1 ENSMUST00000147684 ENSMUSP00000129711 TRANSLATION nonsense_mediated_decay - - 3 56.0 0.0 1.11 0.0 48.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036309 Skp1 ENSMUST00000116595 ENSMUSP00000112294 TRANSLATION nonsense_mediated_decay start - 3 50.0 0.0 0.75 0.0 32.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020814 Mxra7 ENSMUST00000150015 ENSMUSP00000134412 TRANSLATION nonsense_mediated_decay - CCDS83937.1 3 151.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.2461 - -2.0 MINOR ENSMUSG00000020814 Mxra7 ENSMUST00000047715 ENSMUSP00000038213 TRANSLATION protein_coding - CCDS83937.1 1 151.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.2461 1 0.0 ALTERNATIVE:2 ENSMUSG00000020814 Mxra7 ENSMUST00000021170 ENSMUSP00000021170 TRANSLATION protein_coding - CCDS25677.1 1 178.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.8991 2 0.0 PRINCIPAL:2 ENSMUSG00000020436 Gabrg2 ENSMUST00000070725 ENSMUSP00000064739 TRANSLATION protein_coding - CCDS24552.2 1 466.0 0.0 6.3 24.8 306.6 2.0 -2,-4 1.0 7 11.604 PRINCIPAL:4 ENSMUSG00000020436 Gabrg2 ENSMUST00000109290 ENSMUSP00000104913 TRANSLATION protein_coding - - 1 384.0 0.0 6.432 0.0 300.3 1.0 -2,-4 0.0404 6 7.868 MINOR ENSMUSG00000020436 Gabrg2 ENSMUST00000070735 ENSMUSP00000063812 TRANSLATION protein_coding - CCDS24551.1 1 474.0 0.0 6.498 24.6 302.1 2.0 -2,-4 0.9865 7 11.968 ALTERNATIVE:1 ENSMUSG00000020436 Gabrg2 ENSMUST00000146198 - NO_TRANSLATION retained_intron ENSMUSG00000013643 Lypd8 ENSMUST00000013787 ENSMUSP00000013787 TRANSLATION protein_coding - CCDS36163.1 1 255.0 0.0 0.5 0.0 33.5 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000013643 Lypd8 ENSMUST00000108826 ENSMUSP00000104454 TRANSLATION protein_coding - CCDS36163.1 1 255.0 0.0 0.5 0.0 33.5 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000053797 Krt16 ENSMUST00000007280 ENSMUSP00000007280 TRANSLATION protein_coding - CCDS25414.1 1 469.0 0.0 4.15 0.0 384.4 0.0 -4,-2 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000047861 Foxi1 ENSMUST00000060271 ENSMUSP00000058651 TRANSLATION protein_coding - CCDS24539.1 1 372.0 0.0 0.6 9.5 131.5 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045421 Or2y17 ENSMUST00000215014 ENSMUSP00000151059 TRANSLATION protein_coding - CCDS24607.1 5 311.0 0.0 1.0 10.4 153.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045421 Or2y17 ENSMUST00000062719 ENSMUSP00000053611 TRANSLATION protein_coding - CCDS24607.1 - 311.0 0.0 1.0 10.4 153.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042650 Alkbh5 ENSMUST00000044250 ENSMUSP00000049116 TRANSLATION protein_coding - CCDS24794.1 1 395.0 15.0 1.95 10.3 0.0 0.0 -2,0 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000042650 Alkbh5 ENSMUST00000134770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020143 Dock2 ENSMUST00000154178 - NO_TRANSLATION retained_intron ENSMUSG00000020143 Dock2 ENSMUST00000157036 - NO_TRANSLATION retained_intron ENSMUSG00000020143 Dock2 ENSMUST00000101365 ENSMUSP00000098916 TRANSLATION protein_coding - - 1 1175.0 0.0 14.18 0.0 605.3 0.0 -4,-6 0.0117 33 0.0 MINOR ENSMUSG00000020143 Dock2 ENSMUST00000127846 - NO_TRANSLATION retained_intron ENSMUSG00000020143 Dock2 ENSMUST00000143540 ENSMUSP00000116893 TRANSLATION nonsense_mediated_decay - - 2 732.0 0.0 9.0 0.0 605.3 0.0 -4,-6 0.0095 23 -2.0 MINOR ENSMUSG00000020143 Dock2 ENSMUST00000101364 ENSMUSP00000098915 TRANSLATION protein_coding - - 1 295.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 7 0.0 MINOR ENSMUSG00000020143 Dock2 ENSMUST00000093193 ENSMUSP00000090884 TRANSLATION protein_coding - CCDS83791.1 1 1828.0 0.0 26.68 10.7 924.7 0.0 -4,-6 1.0 49 15.0 PRINCIPAL:1 ENSMUSG00000019303 Psmc3ip ENSMUST00000142545 ENSMUSP00000117100 TRANSLATION nonsense_mediated_decay - - 5 85.0 0.0 2.1 0.0 100.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000019303 Psmc3ip ENSMUST00000019447 ENSMUSP00000019447 TRANSLATION protein_coding - CCDS25448.1 1 217.0 0.0 5.85 18.2 222.0 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000019303 Psmc3ip ENSMUST00000126386 - NO_TRANSLATION retained_intron ENSMUSG00000019303 Psmc3ip ENSMUST00000134520 - NO_TRANSLATION retained_intron ENSMUSG00000018925 Heatr9 ENSMUST00000019069 ENSMUSP00000019069 TRANSLATION protein_coding - CCDS36253.1 5 569.0 0.0 7.95 0.3 0.0 0.0 -4,-5 0.9915 - 6.0 PRINCIPAL:1 ENSMUSG00000020707 Rnf135 ENSMUST00000017839 ENSMUSP00000017839 TRANSLATION protein_coding - CCDS25129.1 1 417.0 8.0 1.4 0.0 77.8 0.0 -4,-6 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000020707 Rnf135 ENSMUST00000134909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078132 Gm11939 ENSMUST00000104931 ENSMUSP00000100536 TRANSLATION protein_coding - - - 99.0 0.0 0.0 2.3 139.9 0.0 -4,-6 0.7216 - 7.0 PRINCIPAL:1 ENSMUSG00000020407 Upp1 ENSMUST00000166455 ENSMUSP00000129276 TRANSLATION protein_coding start/stop - 5 143.0 5.0 3.806 0.0 28.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000020407 Upp1 ENSMUST00000130522 ENSMUSP00000123285 TRANSLATION protein_coding stop - 2 137.0 2.0 3.08 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000020407 Upp1 ENSMUST00000101525 ENSMUSP00000099063 TRANSLATION protein_coding - CCDS24432.1 1 311.0 7.0 6.74 10.2 101.0 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000020407 Upp1 ENSMUST00000146696 - NO_TRANSLATION retained_intron ENSMUSG00000020407 Upp1 ENSMUST00000172452 ENSMUSP00000129787 TRANSLATION protein_coding stop - 5 114.0 2.0 2.33 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000020407 Upp1 ENSMUST00000020677 ENSMUSP00000020677 TRANSLATION protein_coding - CCDS24432.1 1 311.0 7.0 6.74 10.2 101.0 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000020407 Upp1 ENSMUST00000170444 ENSMUSP00000125934 TRANSLATION protein_coding stop - 5 149.0 5.0 3.41 0.0 31.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020407 Upp1 ENSMUST00000164791 ENSMUSP00000127473 TRANSLATION protein_coding - CCDS24432.1 1 311.0 7.0 6.74 10.2 101.0 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000020407 Upp1 ENSMUST00000168121 - NO_TRANSLATION retained_intron ENSMUSG00000020469 Myl7 ENSMUST00000102921 ENSMUSP00000099985 TRANSLATION protein_coding - CCDS24408.1 1 175.0 6.0 4.8 30.6 37.0 0.0 -4,0 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000020744 Slc25a19 ENSMUST00000178003 ENSMUSP00000137534 TRANSLATION protein_coding - CCDS25644.1 5 318.0 0.0 4.952 12.0 219.0 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000020744 Slc25a19 ENSMUST00000144083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020744 Slc25a19 ENSMUST00000021089 ENSMUSP00000021089 TRANSLATION protein_coding - CCDS25644.1 1 318.0 0.0 4.952 12.0 219.0 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000020744 Slc25a19 ENSMUST00000129194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020744 Slc25a19 ENSMUST00000135552 ENSMUSP00000114566 TRANSLATION protein_coding stop - 3 225.0 0.0 3.14 0.0 151.9 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000020744 Slc25a19 ENSMUST00000141614 ENSMUSP00000120390 TRANSLATION protein_coding stop - 3 44.0 0.0 1.13 0.0 23.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020744 Slc25a19 ENSMUST00000150898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020744 Slc25a19 ENSMUST00000106503 ENSMUSP00000102112 TRANSLATION protein_coding - CCDS56819.1 1 227.0 0.0 2.53 0.0 95.5 0.0 -4,-6 0.0055 3 1.158 MINOR ENSMUSG00000020744 Slc25a19 ENSMUST00000134171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020744 Slc25a19 ENSMUST00000140539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020744 Slc25a19 ENSMUST00000155709 ENSMUSP00000115742 TRANSLATION protein_coding stop - 3 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020744 Slc25a19 ENSMUST00000154623 ENSMUSP00000116005 TRANSLATION protein_coding stop - 2 37.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000089724 Krtap4-8 ENSMUST00000107439 ENSMUSP00000103063 TRANSLATION protein_coding - CCDS48916.1 - 209.0 0.0 0.0 0.0 84.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000040978 Gm11992 ENSMUST00000043285 ENSMUSP00000039806 TRANSLATION protein_coding - CCDS24431.1 1 291.0 0.0 0.0 6.2 0.0 0.0 -4,-6 1.0 6 2.0 PRINCIPAL:1 ENSMUSG00000049928 Glp2r ENSMUST00000051765 ENSMUSP00000061560 TRANSLATION protein_coding - CCDS24860.1 1 512.0 0.0 9.53 0.0 313.4 5.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049928 Glp2r ENSMUST00000021289 ENSMUSP00000021289 TRANSLATION protein_coding - - 1 304.0 0.0 5.2 0.0 181.2 4.0 -4,-6 0.0072 - 0.0 MINOR ENSMUSG00000000384 Tbrg4 ENSMUST00000131815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000384 Tbrg4 ENSMUST00000189268 ENSMUSP00000140835 TRANSLATION protein_coding - CCDS24423.1 1 630.0 0.0 2.672 9.9 196.5 0.0 -4,0 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000000384 Tbrg4 ENSMUST00000156969 ENSMUSP00000114256 TRANSLATION nonsense_mediated_decay - CCDS24423.1 1 630.0 0.0 2.672 9.9 196.5 0.0 -4,0 1.0 14 -2.0 MINOR ENSMUSG00000000384 Tbrg4 ENSMUST00000136682 ENSMUSP00000114174 TRANSLATION protein_coding stop - 3 158.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 4 -2.0 MINOR ENSMUSG00000000384 Tbrg4 ENSMUST00000134016 - NO_TRANSLATION retained_intron ENSMUSG00000000384 Tbrg4 ENSMUST00000151008 - NO_TRANSLATION retained_intron ENSMUSG00000000384 Tbrg4 ENSMUST00000131313 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000384 Tbrg4 ENSMUST00000144463 ENSMUSP00000120103 TRANSLATION protein_coding stop - 3 112.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 3 -2.0 MINOR ENSMUSG00000000384 Tbrg4 ENSMUST00000150697 ENSMUSP00000123131 TRANSLATION nonsense_mediated_decay - - 1 365.0 0.0 0.852 0.0 0.0 0.0 -4,0 0.0004 10 -2.0 MINOR ENSMUSG00000000384 Tbrg4 ENSMUST00000131477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000384 Tbrg4 ENSMUST00000000394 ENSMUSP00000000394 TRANSLATION protein_coding - CCDS24423.1 1 630.0 0.0 2.672 9.9 196.5 0.0 -4,0 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000000384 Tbrg4 ENSMUST00000132446 - NO_TRANSLATION retained_intron ENSMUSG00000017830 Dhx58 ENSMUST00000017974 ENSMUSP00000017974 TRANSLATION protein_coding - CCDS25431.1 1 678.0 13.0 11.4 13.2 239.8 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000017830 Dhx58 ENSMUST00000132930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017830 Dhx58 ENSMUST00000150656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017830 Dhx58 ENSMUST00000126167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017830 Dhx58 ENSMUST00000140543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017830 Dhx58 ENSMUST00000149869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047181 Samd14 ENSMUST00000124735 ENSMUSP00000123361 TRANSLATION protein_coding stop - 3 132.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000047181 Samd14 ENSMUST00000055947 ENSMUSP00000062231 TRANSLATION protein_coding - CCDS25269.1 1 417.0 0.0 2.0 9.4 44.5 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000047181 Samd14 ENSMUST00000128512 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044788 Fads6 ENSMUST00000056153 ENSMUSP00000058783 TRANSLATION protein_coding - CCDS25626.1 1 342.0 0.0 6.0 4.5 46.3 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000044788 Fads6 ENSMUST00000141006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037601 Nme1 ENSMUST00000021220 ENSMUSP00000021220 TRANSLATION protein_coding stop - 1 127.0 10.0 3.75 0.0 167.0 0.0 -4,-5 0.0004 6 -2.0 MINOR ENSMUSG00000037601 Nme1 ENSMUST00000107844 ENSMUSP00000103475 TRANSLATION protein_coding - - 3 117.0 7.0 2.55 0.0 97.3 0.0 -4,-5 0.0 4 6.81 MINOR ENSMUSG00000037601 Nme1 ENSMUST00000135884 ENSMUSP00000117022 TRANSLATION protein_coding - CCDS25247.1 1 152.0 10.0 4.5 33.9 185.5 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000020889 Nr1d1 ENSMUST00000064941 ENSMUSP00000069505 TRANSLATION protein_coding - CCDS25363.1 1 615.0 8.0 4.75 11.3 203.2 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000020889 Nr1d1 ENSMUST00000139220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063827 Or2y12 ENSMUST00000213899 ENSMUSP00000148935 TRANSLATION protein_coding - CCDS24615.1 5 311.0 0.0 1.0 10.7 163.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063827 Or2y12 ENSMUST00000074543 ENSMUSP00000074130 TRANSLATION protein_coding - CCDS24615.1 - 311.0 0.0 1.0 10.7 163.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063827 Or2y12 ENSMUST00000213707 ENSMUSP00000150149 TRANSLATION protein_coding - CCDS24615.1 5 311.0 0.0 1.0 10.7 163.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063827 Or2y12 ENSMUST00000217564 ENSMUSP00000149221 TRANSLATION protein_coding - CCDS24615.1 5 311.0 0.0 1.0 10.7 163.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063827 Or2y12 ENSMUST00000213152 ENSMUSP00000150805 TRANSLATION protein_coding - CCDS24615.1 5 311.0 0.0 1.0 10.7 163.8 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000016940 Kctd2 ENSMUST00000143775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016940 Kctd2 ENSMUST00000103035 ENSMUSP00000099324 TRANSLATION protein_coding - CCDS25634.1 1 263.0 0.0 4.6 7.5 79.6 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000016940 Kctd2 ENSMUST00000106533 ENSMUSP00000102143 TRANSLATION protein_coding - - 1 338.0 0.0 4.6 0.0 79.6 0.0 -4,-5 0.0234 3 12.0 MINOR ENSMUSG00000016940 Kctd2 ENSMUST00000143856 - NO_TRANSLATION retained_intron ENSMUSG00000016940 Kctd2 ENSMUST00000123345 ENSMUSP00000115862 TRANSLATION protein_coding start - 3 278.0 0.0 4.6 0.0 79.6 0.0 -4,-5 0.0145 3 -2.0 MINOR ENSMUSG00000035042 Ccl5 ENSMUST00000035938 ENSMUSP00000039600 TRANSLATION protein_coding - CCDS36254.1 1 91.0 0.0 1.87 18.7 75.2 0.0 3,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035042 Ccl5 ENSMUST00000125015 - NO_TRANSLATION retained_intron ENSMUSG00000017776 Crk ENSMUST00000108425 ENSMUSP00000104063 TRANSLATION protein_coding - CCDS70241.1 1 204.0 0.0 3.0 11.8 124.8 0.0 -4,-6 0.6828 11 8.616 MINOR ENSMUSG00000017776 Crk ENSMUST00000093115 ENSMUSP00000090803 TRANSLATION protein_coding - - 1 261.0 0.0 3.0 0.0 124.8 0.0 -4,-6 0.002 11 5.616 MINOR ENSMUSG00000017776 Crk ENSMUST00000147718 ENSMUSP00000116527 TRANSLATION protein_coding start - 3 224.0 0.0 3.0 0.0 80.5 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000017776 Crk ENSMUST00000108426 ENSMUSP00000104064 TRANSLATION protein_coding - CCDS70242.1 3 82.0 0.0 2.0 0.7 65.7 0.0 -4,-6 0.0114 3 0.072 MINOR ENSMUSG00000017776 Crk ENSMUST00000017920 ENSMUSP00000017920 TRANSLATION protein_coding - CCDS25055.1 1 304.0 0.0 5.0 10.7 164.5 0.0 -4,-6 1.0 14 14.694 PRINCIPAL:1 ENSMUSG00000036620 Mgat4b ENSMUST00000133714 - NO_TRANSLATION retained_intron ENSMUSG00000036620 Mgat4b ENSMUST00000147468 ENSMUSP00000119786 TRANSLATION protein_coding stop - 3 148.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000036620 Mgat4b ENSMUST00000041725 ENSMUSP00000043346 TRANSLATION protein_coding - CCDS24630.1 1 548.0 0.0 9.712 27.7 448.8 0.0 0,-4 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000036620 Mgat4b ENSMUST00000122977 - NO_TRANSLATION retained_intron ENSMUSG00000036620 Mgat4b ENSMUST00000151803 ENSMUSP00000116802 TRANSLATION nonsense_mediated_decay start - 5 252.0 0.0 4.5 0.0 288.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020430 Pes1 ENSMUST00000020705 ENSMUSP00000020705 TRANSLATION protein_coding - CCDS24372.1 1 584.0 0.0 7.297 3.9 473.2 0.0 -4,-5 1.0 8 9.0 PRINCIPAL:2 ENSMUSG00000020430 Pes1 ENSMUST00000130973 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020430 Pes1 ENSMUST00000137544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020430 Pes1 ENSMUST00000109985 ENSMUSP00000105612 TRANSLATION protein_coding - - 5 588.0 0.0 7.297 3.2 464.5 0.0 -4,-5 0.6656 8 8.093 ALTERNATIVE:2 ENSMUSG00000017376 Nlk ENSMUST00000142739 ENSMUSP00000119345 TRANSLATION protein_coding - CCDS25113.2 1 527.0 18.0 5.09 25.8 214.3 0.0 -4,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000017376 Nlk ENSMUST00000170394 ENSMUSP00000130555 TRANSLATION protein_coding start - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000017376 Nlk ENSMUST00000165475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017376 Nlk ENSMUST00000165271 - NO_TRANSLATION retained_intron ENSMUSG00000070334 Krtap31-1 ENSMUST00000093935 ENSMUSP00000091467 TRANSLATION protein_coding - CCDS25400.1 - 177.0 0.0 0.0 0.0 50.1 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000020905 Usp43 ENSMUST00000108677 ENSMUSP00000104317 TRANSLATION protein_coding - CCDS70212.1 1 1127.0 4.0 3.238 0.1 163.1 0.0 -4,-7 0.3679 12 14.338 MINOR ENSMUSG00000020905 Usp43 ENSMUST00000021288 ENSMUSP00000021288 TRANSLATION protein_coding - CCDS24861.2 1 1132.0 4.0 3.238 0.1 190.8 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000020905 Usp43 ENSMUST00000152120 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020905 Usp43 ENSMUST00000129961 - NO_TRANSLATION retained_intron ENSMUSG00000018415 Gid4 ENSMUST00000139477 ENSMUSP00000135441 TRANSLATION nonsense_mediated_decay - CCDS24790.1 2 217.0 0.0 5.3 21.3 209.6 0.0 -4,-5 1.0 3 -2.0 MINOR ENSMUSG00000018415 Gid4 ENSMUST00000070681 ENSMUSP00000064926 TRANSLATION protein_coding - CCDS24790.1 1 217.0 0.0 5.3 21.3 209.6 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000001027 Scn4a ENSMUST00000174877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001027 Scn4a ENSMUST00000021056 ENSMUSP00000021056 TRANSLATION protein_coding - CCDS48961.1 1 1841.0 0.0 11.932 0.1 1053.7 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000020299 4930524B15Rik ENSMUST00000102829 ENSMUSP00000099893 TRANSLATION protein_coding - CCDS24515.1 1 165.0 0.0 1.33 0.4 224.6 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037857 Nufip2 ENSMUST00000181023 ENSMUSP00000137922 TRANSLATION protein_coding - - 1 710.0 0.0 0.33 0.0 933.9 0.0 -4,-6 0.0906 19 6.894 MINOR ENSMUSG00000037857 Nufip2 ENSMUST00000155238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037857 Nufip2 ENSMUST00000126942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037857 Nufip2 ENSMUST00000100802 ENSMUSP00000098365 TRANSLATION protein_coding - CCDS25083.1 1 692.0 0.0 0.83 7.6 958.8 0.0 -4,-6 1.0 19 14.0 PRINCIPAL:1 ENSMUSG00000020817 Rabep1 ENSMUST00000108533 ENSMUSP00000104173 TRANSLATION protein_coding - - 1 864.0 0.0 5.12 13.5 1453.3 0.0 -4,-5 0.8294 29 11.4 ALTERNATIVE:1 ENSMUSG00000020817 Rabep1 ENSMUST00000177731 ENSMUSP00000136069 TRANSLATION protein_coding - CCDS78985.1 1 778.0 0.0 5.12 4.5 1321.4 0.0 -4,-5 0.3677 28 7.952 MINOR ENSMUSG00000020817 Rabep1 ENSMUST00000178245 ENSMUSP00000137267 TRANSLATION protein_coding - CCDS70232.1 1 819.0 0.0 5.12 5.3 1372.2 0.0 -4,-5 0.4533 29 8.172 MINOR ENSMUSG00000020817 Rabep1 ENSMUST00000142220 - NO_TRANSLATION retained_intron ENSMUSG00000020817 Rabep1 ENSMUST00000076270 ENSMUSP00000075619 TRANSLATION protein_coding - CCDS24968.1 1 862.0 0.0 5.12 15.7 1460.0 0.0 -4,-5 1.0 30 12.0 PRINCIPAL:3 ENSMUSG00000020817 Rabep1 ENSMUST00000100928 ENSMUSP00000098488 TRANSLATION protein_coding - - 5 827.0 0.0 4.12 0.0 1390.6 0.0 -4,-5 0.0718 27 5.002 MINOR ENSMUSG00000020817 Rabep1 ENSMUST00000081362 ENSMUSP00000080102 TRANSLATION protein_coding - CCDS78984.1 1 822.0 0.0 5.12 0.0 1028.8 0.0 -4,-5 0.229 29 7.0 MINOR ENSMUSG00000020817 Rabep1 ENSMUST00000179114 ENSMUSP00000136369 TRANSLATION protein_coding - - 1 243.0 0.0 0.0 0.0 411.7 0.0 -4,-5 0.0 8 0.0 MINOR ENSMUSG00000063549 Or2w3 ENSMUST00000213232 ENSMUSP00000150953 TRANSLATION protein_coding - CCDS36165.1 5 327.0 0.0 1.0 0.0 162.8 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063549 Or2w3 ENSMUST00000216442 ENSMUSP00000150410 TRANSLATION nonsense_mediated_decay - CCDS36165.1 5 327.0 0.0 1.0 0.0 162.8 5.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000063549 Or2w3 ENSMUST00000214400 ENSMUSP00000150916 TRANSLATION nonsense_mediated_decay - CCDS36165.1 5 327.0 0.0 1.0 0.0 162.8 5.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000063549 Or2w3 ENSMUST00000217399 ENSMUSP00000149062 TRANSLATION nonsense_mediated_decay - CCDS36165.1 5 327.0 0.0 1.0 0.0 162.8 5.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000063549 Or2w3 ENSMUST00000072030 ENSMUSP00000071913 TRANSLATION protein_coding - CCDS36165.1 - 327.0 0.0 1.0 0.0 162.8 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063549 Or2w3 ENSMUST00000214392 ENSMUSP00000150990 TRANSLATION protein_coding - CCDS36165.1 5 327.0 0.0 1.0 0.0 162.8 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063549 Or2w3 ENSMUST00000213793 ENSMUSP00000150004 TRANSLATION nonsense_mediated_decay - CCDS36165.1 5 327.0 0.0 1.0 0.0 162.8 5.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000003948 Mmd ENSMUST00000004050 ENSMUSP00000004050 TRANSLATION protein_coding - CCDS25240.1 1 238.0 0.0 5.25 21.9 65.5 5.0 -4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000003948 Mmd ENSMUST00000107887 ENSMUSP00000103519 TRANSLATION protein_coding - - 1 187.0 0.0 4.25 0.0 47.6 4.0 -4,-1 0.0058 - 8.364 MINOR ENSMUSG00000020520 Galnt10 ENSMUST00000108846 ENSMUSP00000104474 TRANSLATION protein_coding - - 1 134.0 0.0 2.0 0.0 0.0 0.0 0,-3 0.0 5 0.0 MINOR ENSMUSG00000020520 Galnt10 ENSMUST00000066987 ENSMUSP00000065096 TRANSLATION protein_coding - CCDS24719.1 1 603.0 21.0 11.0 17.8 218.5 0.0 0,-3 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000034493 4930556J24Rik ENSMUST00000042344 ENSMUSP00000048953 TRANSLATION protein_coding - - 1 146.0 7.0 0.0 0.0 0.0 0.0 -4,-1 0.5867 - 6.0 PRINCIPAL:1 ENSMUSG00000044066 Cep68 ENSMUST00000109596 ENSMUSP00000105225 TRANSLATION protein_coding - - 1 660.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0595 7 3.426 MINOR ENSMUSG00000044066 Cep68 ENSMUST00000161218 - NO_TRANSLATION retained_intron ENSMUSG00000044066 Cep68 ENSMUST00000162811 ENSMUSP00000125113 TRANSLATION protein_coding - - 1 633.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0702 6 0.0 MINOR ENSMUSG00000044066 Cep68 ENSMUST00000050611 ENSMUSP00000054943 TRANSLATION protein_coding - CCDS24456.1 1 733.0 0.0 1.4 0.1 0.0 0.0 -4,-5 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000038216 Pnmt ENSMUST00000041301 ENSMUSP00000035549 TRANSLATION protein_coding - CCDS25347.1 1 295.0 24.0 3.0 0.0 306.0 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000038216 Pnmt ENSMUST00000124527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060180 Myh13 ENSMUST00000181027 ENSMUSP00000137888 TRANSLATION protein_coding start/stop - 3 223.0 0.0 3.8 0.0 58.3 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000060180 Myh13 ENSMUST00000108684 ENSMUSP00000104324 TRANSLATION protein_coding - CCDS36185.1 5 1938.0 16.0 35.63 17.5 1511.1 0.0 -4,-5 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000060180 Myh13 ENSMUST00000180845 ENSMUSP00000137731 TRANSLATION protein_coding - CCDS36185.1 5 1938.0 16.0 35.63 17.5 1511.1 0.0 -4,-5 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000060180 Myh13 ENSMUST00000081911 ENSMUSP00000080584 TRANSLATION protein_coding - CCDS36185.1 5 1938.0 16.0 35.63 17.5 1511.1 0.0 -4,-5 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000018844 Fndc8 ENSMUST00000018988 ENSMUSP00000018988 TRANSLATION protein_coding - CCDS25151.1 1 321.0 0.0 0.0 1.3 28.4 0.0 -4,-5 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000000538 Tom1l2 ENSMUST00000102682 ENSMUSP00000099743 TRANSLATION protein_coding - CCDS24787.1 1 440.0 0.0 6.04 0.0 251.1 0.0 -4,-5 0.0614 13 6.5 MINOR ENSMUSG00000000538 Tom1l2 ENSMUST00000151284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000538 Tom1l2 ENSMUST00000153920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000538 Tom1l2 ENSMUST00000064019 ENSMUSP00000063414 TRANSLATION protein_coding - - 1 450.0 0.0 6.04 0.0 251.1 0.0 -4,-5 0.0114 13 6.5 MINOR ENSMUSG00000000538 Tom1l2 ENSMUST00000102683 ENSMUSP00000099744 TRANSLATION protein_coding - CCDS24786.1 1 507.0 0.0 6.79 22.9 251.1 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:3 ENSMUSG00000000538 Tom1l2 ENSMUST00000142225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000538 Tom1l2 ENSMUST00000143124 ENSMUSP00000121936 TRANSLATION protein_coding start - 3 179.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000000538 Tom1l2 ENSMUST00000093048 ENSMUSP00000090736 TRANSLATION protein_coding - - 5 462.0 0.0 5.79 4.3 221.7 0.0 -4,-5 0.1092 12 5.606 MINOR ENSMUSG00000000538 Tom1l2 ENSMUST00000093046 ENSMUSP00000090734 TRANSLATION protein_coding - - 5 457.0 0.0 5.79 2.7 155.8 0.0 -4,-5 0.0309 12 5.314 MINOR ENSMUSG00000000538 Tom1l2 ENSMUST00000095254 ENSMUSP00000092884 TRANSLATION protein_coding - CCDS36171.1 1 487.0 0.0 6.79 19.0 251.1 0.0 -4,-5 0.9713 16 11.288 ALTERNATIVE:1 ENSMUSG00000000538 Tom1l2 ENSMUST00000133420 ENSMUSP00000117623 TRANSLATION protein_coding start - 3 199.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000033909 Usp36 ENSMUST00000148998 - NO_TRANSLATION retained_intron ENSMUSG00000033909 Usp36 ENSMUST00000141647 - NO_TRANSLATION retained_intron ENSMUSG00000033909 Usp36 ENSMUST00000151433 - NO_TRANSLATION retained_intron ENSMUSG00000033909 Usp36 ENSMUST00000092382 ENSMUSP00000090036 TRANSLATION protein_coding - CCDS48998.1 5 1098.0 4.0 8.58 0.1 164.3 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000033909 Usp36 ENSMUST00000106296 ENSMUSP00000101903 TRANSLATION protein_coding - CCDS48998.1 5 1098.0 4.0 8.58 0.1 164.3 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000033909 Usp36 ENSMUST00000144153 ENSMUSP00000122761 TRANSLATION protein_coding stop - 5 890.0 4.0 7.25 0.0 119.3 0.0 -4,-7 0.0123 7 -2.0 MINOR ENSMUSG00000042200 Cdrt4 ENSMUST00000035854 ENSMUSP00000048844 TRANSLATION protein_coding - CCDS24835.1 1 179.0 0.0 0.4 0.0 196.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025129 Ppp1r27 ENSMUST00000026121 ENSMUSP00000026121 TRANSLATION protein_coding - CCDS36392.1 1 154.0 0.0 2.8 7.5 55.9 0.0 -4,-1 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000109833 Gm40193 ENSMUST00000209971 ENSMUSP00000148188 TRANSLATION protein_coding - - 5 78.0 0.0 0.0 1.0 0.0 0.0 -4,-2 0.5895 - 0.0 PRINCIPAL:1 ENSMUSG00000014351 Gip ENSMUST00000103156 ENSMUSP00000099445 TRANSLATION protein_coding - CCDS25287.1 5 144.0 0.0 1.4 5.0 39.4 0.0 4,-1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000014351 Gip ENSMUST00000103157 ENSMUSP00000099446 TRANSLATION protein_coding - CCDS25287.1 1 144.0 0.0 1.4 5.0 39.4 0.0 4,-1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000034936 Arl4d ENSMUST00000039388 ENSMUSP00000035918 TRANSLATION protein_coding - CCDS36336.1 1 201.0 18.0 1.0 36.9 194.3 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000035172 Plekhh3 ENSMUST00000123864 ENSMUSP00000120865 TRANSLATION protein_coding stop - 3 247.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000035172 Plekhh3 ENSMUST00000043397 ENSMUSP00000046044 TRANSLATION protein_coding - CCDS25453.1 1 796.0 0.0 4.9925 7.6 129.9 0.0 0,-5 1.0 12 10.0 PRINCIPAL:3 ENSMUSG00000035172 Plekhh3 ENSMUST00000164474 ENSMUSP00000127088 TRANSLATION protein_coding - CCDS83899.1 1 793.0 0.0 4.9925 7.6 133.5 0.0 0,-5 0.9735 11 10.0 ALTERNATIVE:1 ENSMUSG00000035172 Plekhh3 ENSMUST00000139200 ENSMUSP00000137793 TRANSLATION nonsense_mediated_decay start - 1 320.0 0.0 2.365 0.0 60.3 0.0 -4,-2 0.0008 3 -2.0 MINOR ENSMUSG00000035172 Plekhh3 ENSMUST00000156320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035172 Plekhh3 ENSMUST00000129895 ENSMUSP00000137841 TRANSLATION nonsense_mediated_decay - - 5 705.0 0.0 4.49 1.0 131.1 0.0 0,-5 0.0965 12 -2.0 MINOR ENSMUSG00000034255 Arhgap27 ENSMUST00000150122 - NO_TRANSLATION retained_intron ENSMUSG00000034255 Arhgap27 ENSMUST00000092557 ENSMUSP00000102637 TRANSLATION protein_coding - CCDS36350.1 2 243.0 0.0 0.0 0.0 30.9 0.0 -4,-5 0.0325 3 0.0 MINOR ENSMUSG00000034255 Arhgap27 ENSMUST00000107023 ENSMUSP00000102638 TRANSLATION protein_coding stop - 2 123.0 0.0 0.4 0.0 38.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034255 Arhgap27 ENSMUST00000144194 - NO_TRANSLATION retained_intron ENSMUSG00000034255 Arhgap27 ENSMUST00000163250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034255 Arhgap27 ENSMUST00000124490 - NO_TRANSLATION retained_intron ENSMUSG00000034255 Arhgap27 ENSMUST00000116102 - NO_TRANSLATION retained_intron ENSMUSG00000034255 Arhgap27 ENSMUST00000136491 ENSMUSP00000128051 TRANSLATION protein_coding stop - 3 91.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000034255 Arhgap27 ENSMUST00000041385 ENSMUSP00000039427 TRANSLATION protein_coding - CCDS25517.1 1 670.0 5.0 8.8 4.4 272.6 0.0 -4,-2 1.0 8 14.4 PRINCIPAL:1 ENSMUSG00000034255 Arhgap27 ENSMUST00000107024 ENSMUSP00000102639 TRANSLATION protein_coding - CCDS56815.1 5 869.0 5.0 8.8 0.0 303.5 0.0 -4,-5 0.2657 11 13.0 MINOR ENSMUSG00000034255 Arhgap27 ENSMUST00000139830 - NO_TRANSLATION retained_intron ENSMUSG00000034394 Lif ENSMUST00000066283 ENSMUSP00000067066 TRANSLATION protein_coding - CCDS24383.1 5 203.0 0.0 2.75 11.4 224.4 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034394 Lif ENSMUST00000040750 ENSMUSP00000036853 TRANSLATION protein_coding - CCDS24384.1 1 158.0 0.0 1.75 2.0 221.5 0.0 -4,-6 0.1327 - 9.93 MINOR ENSMUSG00000034394 Lif ENSMUST00000154927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061111 Mcrip1 ENSMUST00000034913 ENSMUSP00000034913 TRANSLATION protein_coding - CCDS36391.1 1 97.0 0.0 0.0 26.4 80.9 0.0 -4,-1 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000061111 Mcrip1 ENSMUST00000135515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046490 Rnf222 ENSMUST00000065213 ENSMUSP00000067364 TRANSLATION protein_coding - CCDS24871.1 1 211.0 8.0 0.0 6.4 39.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000056342 Usp34 ENSMUST00000148927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056342 Usp34 ENSMUST00000125701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056342 Usp34 ENSMUST00000180046 ENSMUSP00000137430 TRANSLATION protein_coding - CCDS56763.1 5 3582.0 3.0 5.325 0.1 146.3 0.0 -4,-5 1.0 43 15.0 PRINCIPAL:1 ENSMUSG00000056342 Usp34 ENSMUST00000130131 ENSMUSP00000115168 TRANSLATION protein_coding start - 5 810.0 3.0 5.325 0.0 146.3 0.0 -4,-6 0.0772 5 -2.0 MINOR ENSMUSG00000056342 Usp34 ENSMUST00000155984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056342 Usp34 ENSMUST00000129368 ENSMUSP00000121426 TRANSLATION protein_coding start/stop - 5 288.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0015 4 -2.0 MINOR ENSMUSG00000056342 Usp34 ENSMUST00000129521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056342 Usp34 ENSMUST00000137823 ENSMUSP00000120747 TRANSLATION protein_coding start - 5 3602.0 3.0 5.325 0.0 146.3 0.0 -4,-7 0.416 43 -2.0 MINOR ENSMUSG00000039230 Tbcd ENSMUST00000147470 - NO_TRANSLATION retained_intron ENSMUSG00000039230 Tbcd ENSMUST00000147560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039230 Tbcd ENSMUST00000125167 ENSMUSP00000124735 TRANSLATION nonsense_mediated_decay start - 5 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039230 Tbcd ENSMUST00000151666 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039230 Tbcd ENSMUST00000106093 ENSMUSP00000101699 TRANSLATION protein_coding stop - 3 84.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000039230 Tbcd ENSMUST00000155666 - NO_TRANSLATION retained_intron ENSMUSG00000039230 Tbcd ENSMUST00000139414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039230 Tbcd ENSMUST00000103013 ENSMUSP00000099302 TRANSLATION protein_coding - CCDS25778.1 1 1196.0 0.0 0.0 3.7 236.7 0.0 -4,-5 1.0 28 7.0 PRINCIPAL:1 ENSMUSG00000033857 Engase ENSMUST00000171769 ENSMUSP00000132734 TRANSLATION nonsense_mediated_decay - - 1 96.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000033857 Engase ENSMUST00000168689 ENSMUSP00000125886 TRANSLATION protein_coding start - 5 373.0 0.0 1.1596 0.0 0.0 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000033857 Engase ENSMUST00000135383 ENSMUSP00000117538 TRANSLATION protein_coding - CCDS25704.1 1 734.0 0.0 3.9611 0.4 331.4 0.0 -4,-7 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000033857 Engase ENSMUST00000139813 - NO_TRANSLATION retained_intron ENSMUSG00000033857 Engase ENSMUST00000139917 ENSMUSP00000129698 TRANSLATION nonsense_mediated_decay - - 2 96.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000033857 Engase ENSMUST00000168785 - NO_TRANSLATION retained_intron ENSMUSG00000033857 Engase ENSMUST00000043447 ENSMUSP00000126050 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000033857 Engase ENSMUST00000166995 ENSMUSP00000127862 TRANSLATION nonsense_mediated_decay - - 5 151.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000033857 Engase ENSMUST00000172279 ENSMUSP00000130097 TRANSLATION nonsense_mediated_decay - - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000072983 4933414I15Rik ENSMUST00000109123 ENSMUSP00000104751 TRANSLATION protein_coding - - 1 133.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5673 - 0.0 PRINCIPAL:1 ENSMUSG00000072983 4933414I15Rik ENSMUST00000156329 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041598 Cdc42ep4 ENSMUST00000053536 ENSMUSP00000060227 TRANSLATION protein_coding - CCDS25604.1 1 349.0 0.0 0.5 0.1 125.6 0.0 -4,-1 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000041598 Cdc42ep4 ENSMUST00000153453 ENSMUSP00000120316 TRANSLATION protein_coding stop - 2 86.0 0.0 0.5 0.0 48.3 0.0 -4,0 0.0479 5 -2.0 MINOR ENSMUSG00000041598 Cdc42ep4 ENSMUST00000131488 ENSMUSP00000114599 TRANSLATION protein_coding stop - 5 193.0 0.0 0.5 0.0 48.3 0.0 -4,-1 0.0331 6 -2.0 MINOR ENSMUSG00000041598 Cdc42ep4 ENSMUST00000106616 ENSMUSP00000102227 TRANSLATION protein_coding - CCDS25604.1 1 349.0 0.0 0.5 0.1 125.6 0.0 -4,-1 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000069744 Psmb3 ENSMUST00000129197 - NO_TRANSLATION retained_intron ENSMUSG00000069744 Psmb3 ENSMUST00000103147 ENSMUSP00000099436 TRANSLATION protein_coding - CCDS25328.1 1 205.0 0.0 4.5 34.9 146.9 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000069744 Psmb3 ENSMUST00000138265 - NO_TRANSLATION retained_intron ENSMUSG00000041654 Slc39a11 ENSMUST00000071539 ENSMUSP00000071469 TRANSLATION protein_coding - CCDS36363.1 1 335.0 0.0 0.7225 17.5 107.8 13.0 -2,-5 1.0 4 11.668 PRINCIPAL:4 ENSMUSG00000041654 Slc39a11 ENSMUST00000125890 ENSMUSP00000115472 TRANSLATION protein_coding stop - 5 200.0 0.0 0.0 1.0 35.8 9.0 -2,-5 0.013 2 -2.0 MINOR ENSMUSG00000041654 Slc39a11 ENSMUST00000136392 ENSMUSP00000117641 TRANSLATION protein_coding stop - 5 42.0 0.0 0.0 0.0 0.0 1.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000041654 Slc39a11 ENSMUST00000123153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041654 Slc39a11 ENSMUST00000149034 ENSMUSP00000120929 TRANSLATION protein_coding stop - 3 149.0 0.0 0.0 0.0 0.0 9.0 -2,-5 0.0024 1 -2.0 MINOR ENSMUSG00000041654 Slc39a11 ENSMUST00000042657 ENSMUSP00000037331 TRANSLATION protein_coding - - 2 370.0 0.0 0.7225 0.0 98.5 13.0 -2,-5 0.0509 4 6.0 MINOR ENSMUSG00000041654 Slc39a11 ENSMUST00000146031 ENSMUSP00000121286 TRANSLATION protein_coding stop - 5 61.0 0.0 0.0 0.0 0.0 5.0 -2,-5 0.0024 - -2.0 MINOR ENSMUSG00000041654 Slc39a11 ENSMUST00000106633 ENSMUSP00000102244 TRANSLATION protein_coding - CCDS48975.1 1 342.0 0.0 0.7225 19.0 104.7 13.0 -2,-5 0.9987 4 12.0 ALTERNATIVE:1 ENSMUSG00000020871 Dlx4 ENSMUST00000021241 ENSMUSP00000021241 TRANSLATION protein_coding - CCDS25273.1 1 240.0 0.0 1.5 4.7 72.5 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020871 Dlx4 ENSMUST00000146838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018765 Fxr2 ENSMUST00000155513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018765 Fxr2 ENSMUST00000132742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018765 Fxr2 ENSMUST00000125586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018765 Fxr2 ENSMUST00000247847 ENSMUSP00000159533 TRANSLATION protein_coding - - - 749.0 0.0 9.3 0.0 331.7 0.0 -4,-5 0.0518 16 12.0 MINOR ENSMUSG00000018765 Fxr2 ENSMUST00000018909 ENSMUSP00000018909 TRANSLATION protein_coding - CCDS24901.1 1 674.0 0.0 9.3 8.0 331.7 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000018765 Fxr2 ENSMUST00000139605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018765 Fxr2 ENSMUST00000125989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001510 Dlx3 ENSMUST00000092768 ENSMUSP00000090443 TRANSLATION protein_coding - CCDS25272.1 1 287.0 0.0 1.2 14.6 160.5 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000061086 Myl4 ENSMUST00000153761 ENSMUSP00000114345 TRANSLATION protein_coding stop - 5 191.0 9.0 3.82 8.3 0.0 0.0 -4,-5 0.8207 12 -2.0 MINOR ENSMUSG00000061086 Myl4 ENSMUST00000155271 - NO_TRANSLATION retained_intron ENSMUSG00000061086 Myl4 ENSMUST00000123074 - NO_TRANSLATION retained_intron ENSMUSG00000061086 Myl4 ENSMUST00000106956 ENSMUSP00000102569 TRANSLATION protein_coding - CCDS25535.1 1 193.0 9.0 3.82 8.3 0.0 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000061086 Myl4 ENSMUST00000136244 ENSMUSP00000118284 TRANSLATION protein_coding start - 3 26.0 5.0 0.83 0.0 0.0 0.0 -4,-5 0.0052 - -2.0 MINOR ENSMUSG00000061086 Myl4 ENSMUST00000018800 ENSMUSP00000018800 TRANSLATION protein_coding - CCDS25535.1 1 193.0 9.0 3.82 8.3 0.0 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000061086 Myl4 ENSMUST00000106957 ENSMUSP00000102570 TRANSLATION protein_coding - CCDS25535.1 3 193.0 9.0 3.82 8.3 0.0 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000061086 Myl4 ENSMUST00000130588 ENSMUSP00000122748 TRANSLATION nonsense_mediated_decay - - 3 74.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0044 3 -2.0 MINOR ENSMUSG00000034227 Foxj1 ENSMUST00000036215 ENSMUSP00000038351 TRANSLATION protein_coding - CCDS25665.1 1 421.0 0.0 0.7 11.6 127.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000010086 Rnf112 ENSMUST00000102661 ENSMUSP00000099722 TRANSLATION protein_coding - CCDS78960.1 1 631.0 16.0 3.32 7.9 88.5 0.0 -4,-1 1.0 8 19.52 PRINCIPAL:1 ENSMUSG00000010086 Rnf112 ENSMUST00000054927 ENSMUSP00000056464 TRANSLATION protein_coding - CCDS24812.1 1 654.0 16.0 3.32 0.3 88.5 0.0 -4,0 0.137 9 17.52 MINOR ENSMUSG00000010086 Rnf112 ENSMUST00000152137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010086 Rnf112 ENSMUST00000060255 ENSMUSP00000059903 TRANSLATION protein_coding - - 1 679.0 16.0 3.56 0.0 88.5 0.0 -4,0 0.0677 9 18.0 MINOR ENSMUSG00000010086 Rnf112 ENSMUST00000130648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010086 Rnf112 ENSMUST00000126859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010086 Rnf112 ENSMUST00000136966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020432 Tcn2 ENSMUST00000109990 ENSMUSP00000105617 TRANSLATION protein_coding - CCDS24371.1 1 430.0 0.0 7.5 2.8 412.1 0.0 4,-1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000020432 Tcn2 ENSMUST00000020710 ENSMUSP00000020710 TRANSLATION protein_coding - CCDS24371.1 5 430.0 0.0 7.5 2.8 412.1 0.0 4,-1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000020432 Tcn2 ENSMUST00000109993 ENSMUSP00000105620 TRANSLATION protein_coding - CCDS24371.1 1 430.0 0.0 7.5 2.8 412.1 0.0 4,-1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000020432 Tcn2 ENSMUST00000109989 ENSMUSP00000105616 TRANSLATION protein_coding - CCDS24371.1 1 430.0 0.0 7.5 2.8 412.1 0.0 4,-1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000020432 Tcn2 ENSMUST00000109988 ENSMUSP00000105615 TRANSLATION protein_coding - CCDS24371.1 5 430.0 0.0 7.5 2.8 412.1 0.0 4,-1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000020432 Tcn2 ENSMUST00000109991 ENSMUSP00000105618 TRANSLATION protein_coding - CCDS24371.1 5 430.0 0.0 7.5 2.8 412.1 0.0 4,-1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000020432 Tcn2 ENSMUST00000109992 ENSMUSP00000105619 TRANSLATION protein_coding - CCDS24371.1 5 430.0 0.0 7.5 2.8 412.1 0.0 4,-1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000000278 Scpep1 ENSMUST00000000287 ENSMUSP00000000287 TRANSLATION protein_coding - CCDS25230.1 1 452.0 5.0 8.28 4.3 326.8 0.0 3,-2 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000049957 Ccdc137 ENSMUST00000176120 ENSMUSP00000135801 TRANSLATION protein_coding start - 5 241.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0596 2 -2.0 MINOR ENSMUSG00000049957 Ccdc137 ENSMUST00000175970 ENSMUSP00000134921 TRANSLATION protein_coding stop - 2 111.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.038 - -2.0 MINOR ENSMUSG00000049957 Ccdc137 ENSMUST00000058370 ENSMUSP00000062540 TRANSLATION protein_coding - CCDS25736.1 1 290.0 0.0 0.0 0.4 0.0 0.0 -4,-1 0.9022 5 0.0 PRINCIPAL:1 ENSMUSG00000049957 Ccdc137 ENSMUST00000148849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049957 Ccdc137 ENSMUST00000150400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049957 Ccdc137 ENSMUST00000140308 - NO_TRANSLATION retained_intron ENSMUSG00000049957 Ccdc137 ENSMUST00000145702 - NO_TRANSLATION retained_intron ENSMUSG00000049957 Ccdc137 ENSMUST00000176717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040489 Sox30 ENSMUST00000049038 ENSMUSP00000037519 TRANSLATION protein_coding - CCDS24570.1 1 782.0 0.0 1.4 0.0 80.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000053184 Spaca3 ENSMUST00000103222 ENSMUSP00000099511 TRANSLATION protein_coding - CCDS25136.1 1 163.0 5.0 3.5 7.6 142.6 0.0 1,-4 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000053184 Spaca3 ENSMUST00000103223 ENSMUSP00000099512 TRANSLATION protein_coding - CCDS25136.1 1 163.0 5.0 3.5 7.6 142.6 0.0 1,-4 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000044629 Cnrip1 ENSMUST00000058159 ENSMUSP00000050036 TRANSLATION protein_coding - CCDS24447.1 1 164.0 0.0 3.0 34.7 229.0 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000044629 Cnrip1 ENSMUST00000135637 - NO_TRANSLATION retained_intron ENSMUSG00000044629 Cnrip1 ENSMUST00000131515 ENSMUSP00000122150 TRANSLATION protein_coding stop - 1 184.0 0.0 2.0 0.0 177.9 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000040699 Limd2 ENSMUST00000106875 ENSMUSP00000102488 TRANSLATION protein_coding - CCDS25549.1 3 128.0 8.0 2.132 24.9 42.9 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000040699 Limd2 ENSMUST00000064545 ENSMUSP00000067070 TRANSLATION protein_coding - CCDS25549.1 2 128.0 8.0 2.132 24.9 42.9 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000040699 Limd2 ENSMUST00000045923 ENSMUSP00000045357 TRANSLATION protein_coding - CCDS25549.1 1 128.0 8.0 2.132 24.9 42.9 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000040699 Limd2 ENSMUST00000138094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063652 Slc22a21 ENSMUST00000076493 ENSMUSP00000075814 TRANSLATION protein_coding - CCDS24688.1 1 564.0 0.0 8.03 0.0 102.6 13.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000063652 Slc22a21 ENSMUST00000129301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063652 Slc22a21 ENSMUST00000143352 ENSMUSP00000114966 TRANSLATION nonsense_mediated_decay start - 3 36.0 0.0 1.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000063652 Slc22a21 ENSMUST00000124221 ENSMUSP00000123180 TRANSLATION nonsense_mediated_decay - - 5 174.0 0.0 2.0 0.0 0.0 3.0 -4,-7 0.0028 1 -2.0 MINOR ENSMUSG00000020526 Znhit3 ENSMUST00000103195 ENSMUSP00000099484 TRANSLATION protein_coding - CCDS25189.1 1 151.0 8.0 2.68 6.8 37.3 0.0 -4,-7 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000020526 Znhit3 ENSMUST00000156046 - NO_TRANSLATION retained_intron ENSMUSG00000020526 Znhit3 ENSMUST00000127838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020526 Znhit3 ENSMUST00000144552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020526 Znhit3 ENSMUST00000136656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020799 Tekt1 ENSMUST00000108502 ENSMUSP00000104142 TRANSLATION protein_coding - CCDS36215.1 1 418.0 0.0 7.0 10.3 491.7 0.0 -4,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000020799 Tekt1 ENSMUST00000021155 ENSMUSP00000021155 TRANSLATION protein_coding - CCDS36215.1 1 418.0 0.0 7.0 10.3 491.7 0.0 -4,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000020799 Tekt1 ENSMUST00000108503 ENSMUSP00000104143 TRANSLATION protein_coding - CCDS36215.1 1 418.0 0.0 7.0 10.3 491.7 0.0 -4,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000019302 Atp6v0a1 ENSMUST00000139857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019302 Atp6v0a1 ENSMUST00000139619 ENSMUSP00000121247 TRANSLATION protein_coding stop - 3 79.0 0.0 2.25 0.0 66.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000019302 Atp6v0a1 ENSMUST00000154896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019302 Atp6v0a1 ENSMUST00000151554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019302 Atp6v0a1 ENSMUST00000134919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019302 Atp6v0a1 ENSMUST00000044721 ENSMUSP00000044838 TRANSLATION protein_coding - CCDS25443.1 1 838.0 0.0 17.16 22.0 1136.2 7.0 -4,-5 1.0 21 9.8 PRINCIPAL:4 ENSMUSG00000019302 Atp6v0a1 ENSMUST00000103110 ENSMUSP00000099399 TRANSLATION protein_coding - CCDS56808.1 5 839.0 0.0 16.5 23.1 1139.7 7.0 -4,-5 0.999 21 8.68 MINOR ENSMUSG00000019302 Atp6v0a1 ENSMUST00000092663 ENSMUSP00000090333 TRANSLATION protein_coding - CCDS56809.1 1 832.0 0.0 16.83 22.0 1133.2 7.0 -4,-5 0.9922 21 9.14 ALTERNATIVE:1 ENSMUSG00000019302 Atp6v0a1 ENSMUST00000127810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020357 Flt4 ENSMUST00000152253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020357 Flt4 ENSMUST00000020617 ENSMUSP00000020617 TRANSLATION protein_coding - CCDS24618.1 1 1363.0 20.0 15.43 3.1 455.2 0.0 3,-2 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000019326 Aoc3 ENSMUST00000017316 ENSMUSP00000017316 TRANSLATION protein_coding start - 1 470.0 11.0 4.0 0.0 339.7 0.0 -4,-7 0.0 12 -2.0 MINOR ENSMUSG00000019326 Aoc3 ENSMUST00000103105 ENSMUSP00000099394 TRANSLATION protein_coding - CCDS25465.1 1 765.0 18.0 6.0 7.4 586.4 0.0 0,-4 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000020908 Myh3 ENSMUST00000108689 ENSMUSP00000104329 TRANSLATION protein_coding - CCDS36184.1 5 1940.0 16.0 36.83 15.5 1537.1 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000020444 Guk1 ENSMUST00000170895 ENSMUSP00000130214 TRANSLATION protein_coding - CCDS48809.1 5 207.0 24.0 5.33 0.7 242.7 0.0 -4,-7 0.3277 7 18.0 MINOR ENSMUSG00000020444 Guk1 ENSMUST00000151211 - NO_TRANSLATION retained_intron ENSMUSG00000020444 Guk1 ENSMUST00000154386 - NO_TRANSLATION retained_intron ENSMUSG00000020444 Guk1 ENSMUST00000130815 - NO_TRANSLATION retained_intron ENSMUSG00000020444 Guk1 ENSMUST00000240589 ENSMUSP00000159496 TRANSLATION protein_coding - - - 198.0 24.0 5.33 12.6 242.7 0.0 -4,-2 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000020444 Guk1 ENSMUST00000170202 ENSMUSP00000127566 TRANSLATION protein_coding - CCDS24762.2 1 219.0 24.0 5.33 3.3 242.7 0.0 -1,1 0.3784 8 18.594 MINOR ENSMUSG00000020444 Guk1 ENSMUST00000172714 ENSMUSP00000134236 TRANSLATION protein_coding - - 3 198.0 24.0 5.33 12.6 242.7 0.0 -4,-2 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000044966 Fbxo48 ENSMUST00000061327 ENSMUSP00000057901 TRANSLATION protein_coding - CCDS24445.1 1 161.0 0.0 2.0 1.2 42.0 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000044966 Fbxo48 ENSMUST00000109635 ENSMUSP00000105263 TRANSLATION protein_coding - CCDS24445.1 1 161.0 0.0 2.0 1.2 42.0 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000020910 Adprm ENSMUST00000127407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020910 Adprm ENSMUST00000148379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020910 Adprm ENSMUST00000146648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020910 Adprm ENSMUST00000146338 ENSMUSP00000137768 TRANSLATION nonsense_mediated_decay - - 2 205.0 5.0 1.0 0.0 31.0 0.0 -4,-5 0.0003 3 -2.0 MINOR ENSMUSG00000020910 Adprm ENSMUST00000136013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020910 Adprm ENSMUST00000116363 ENSMUSP00000112064 TRANSLATION protein_coding - CCDS48820.1 1 340.0 8.0 3.0 7.7 44.2 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000055805 Fmnl1 ENSMUST00000021322 - NO_TRANSLATION retained_intron ENSMUSG00000055805 Fmnl1 ENSMUST00000042286 ENSMUSP00000046296 TRANSLATION protein_coding - CCDS36348.1 1 1094.0 0.0 13.825 0.1 573.7 0.0 -4,-6 1.0 18 8.0 PRINCIPAL:2 ENSMUSG00000055805 Fmnl1 ENSMUST00000129726 ENSMUSP00000133299 TRANSLATION protein_coding start/stop - 3 150.0 0.0 1.875 0.0 31.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000055805 Fmnl1 ENSMUST00000218163 ENSMUSP00000151439 TRANSLATION protein_coding - - 5 1100.0 0.0 13.495 0.1 573.6 0.0 -4,-6 0.3308 18 7.34 ALTERNATIVE:2 ENSMUSG00000055805 Fmnl1 ENSMUST00000154871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055805 Fmnl1 ENSMUST00000126425 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055805 Fmnl1 ENSMUST00000107027 ENSMUSP00000102642 TRANSLATION protein_coding - CCDS36349.1 5 1090.0 0.0 13.825 0.1 573.7 0.0 -4,-6 0.6836 17 8.0 ALTERNATIVE:2 ENSMUSG00000018569 Cldn7 ENSMUST00000151515 ENSMUSP00000137627 TRANSLATION protein_coding stop - 2 107.0 0.0 2.55 0.0 98.2 4.0 2,-3 0.0048 - -2.0 MINOR ENSMUSG00000018569 Cldn7 ENSMUST00000108597 ENSMUSP00000104238 TRANSLATION protein_coding - CCDS24925.1 2 211.0 0.0 3.83 31.9 180.2 6.0 0,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000018569 Cldn7 ENSMUST00000018713 ENSMUSP00000018713 TRANSLATION protein_coding - CCDS24925.1 1 211.0 0.0 3.83 31.9 180.2 6.0 0,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000018569 Cldn7 ENSMUST00000108596 ENSMUSP00000104237 TRANSLATION protein_coding - - 3 128.0 0.0 2.5 2.0 98.2 4.0 2,-3 0.0385 - 4.55 MINOR ENSMUSG00000018569 Cldn7 ENSMUST00000060651 ENSMUSP00000090725 TRANSLATION protein_coding stop - 5 83.0 0.0 1.33 0.0 73.0 1.0 0,-4 0.0015 2 -2.0 MINOR ENSMUSG00000056938 Acbd4 ENSMUST00000146176 - NO_TRANSLATION retained_intron ENSMUSG00000056938 Acbd4 ENSMUST00000142630 - NO_TRANSLATION retained_intron ENSMUSG00000056938 Acbd4 ENSMUST00000161013 ENSMUSP00000159576 TRANSLATION protein_coding start - 1 57.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000056938 Acbd4 ENSMUST00000092559 ENSMUSP00000090220 TRANSLATION nonsense_mediated_decay - - 1 86.0 7.0 1.85 0.0 68.5 0.0 -4,-5 0.0079 1 -2.0 MINOR ENSMUSG00000056938 Acbd4 ENSMUST00000162338 - NO_TRANSLATION retained_intron ENSMUSG00000056938 Acbd4 ENSMUST00000152971 ENSMUSP00000118886 TRANSLATION protein_coding stop - 3 109.0 2.0 2.78 0.0 0.0 0.0 -4,-5 0.0431 1 -2.0 MINOR ENSMUSG00000056938 Acbd4 ENSMUST00000129870 ENSMUSP00000116755 TRANSLATION nonsense_mediated_decay - - 5 86.0 7.0 1.85 0.0 68.5 0.0 -4,-5 0.0079 - -2.0 MINOR ENSMUSG00000056938 Acbd4 ENSMUST00000150780 - NO_TRANSLATION retained_intron ENSMUSG00000056938 Acbd4 ENSMUST00000124965 ENSMUSP00000159577 TRANSLATION protein_coding start - 1 115.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000056938 Acbd4 ENSMUST00000147701 - NO_TRANSLATION retained_intron ENSMUSG00000056938 Acbd4 ENSMUST00000140372 ENSMUSP00000115521 TRANSLATION protein_coding stop - 5 172.0 2.0 2.78 0.0 0.0 0.0 -4,-5 0.0369 2 -2.0 MINOR ENSMUSG00000056938 Acbd4 ENSMUST00000134884 ENSMUSP00000120031 TRANSLATION protein_coding stop - 5 54.0 2.0 1.58 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000056938 Acbd4 ENSMUST00000107040 ENSMUSP00000102655 TRANSLATION protein_coding - - 2 287.0 2.0 2.78 0.0 0.0 0.0 -4,-5 0.43 3 7.716 PRINCIPAL:1 ENSMUSG00000056938 Acbd4 ENSMUST00000139374 ENSMUSP00000159574 TRANSLATION nonsense_mediated_decay - - 3 86.0 7.0 1.85 0.0 68.5 0.0 -4,-5 0.0079 - -2.0 MINOR ENSMUSG00000056938 Acbd4 ENSMUST00000130749 ENSMUSP00000159575 TRANSLATION protein_coding stop - 5 72.0 7.0 1.75 0.0 66.3 0.0 -4,-5 0.0077 1 -2.0 MINOR ENSMUSG00000050818 Or2t48 ENSMUST00000134055 ENSMUSP00000145126 TRANSLATION protein_coding - CCDS24733.1 - 315.0 0.0 1.0 2.1 157.4 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000050818 Or2t48 ENSMUST00000213188 ENSMUSP00000149073 TRANSLATION protein_coding - CCDS24733.1 2 315.0 0.0 1.0 2.1 157.4 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000059845 Gm11567 ENSMUST00000078442 ENSMUSP00000098043 TRANSLATION protein_coding - CCDS48924.1 - 195.0 0.0 0.0 0.3 45.6 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000020836 Coro6 ENSMUST00000079770 ENSMUSP00000078703 TRANSLATION protein_coding - CCDS25078.1 1 431.0 0.0 8.0 13.1 241.7 0.0 -4,-1 0.4727 2 7.394 MINOR ENSMUSG00000020836 Coro6 ENSMUST00000021190 ENSMUSP00000021190 TRANSLATION protein_coding - CCDS25077.1 1 471.0 0.0 9.0 35.8 241.7 0.0 -4,-1 1.0 2 12.0 PRINCIPAL:5 ENSMUSG00000020836 Coro6 ENSMUST00000108391 ENSMUSP00000104028 TRANSLATION protein_coding - CCDS25079.1 1 471.0 0.0 9.0 35.8 241.7 0.0 -4,-1 1.0 2 12.0 ALTERNATIVE:1 ENSMUSG00000020836 Coro6 ENSMUST00000130255 ENSMUSP00000120232 TRANSLATION protein_coding stop - 3 14.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020836 Coro6 ENSMUST00000102493 ENSMUSP00000099551 TRANSLATION protein_coding - CCDS25079.1 5 471.0 0.0 9.0 35.8 241.7 0.0 -4,-1 1.0 2 12.0 ALTERNATIVE:1 ENSMUSG00000020836 Coro6 ENSMUST00000052515 ENSMUSP00000056862 TRANSLATION protein_coding - - 1 432.0 0.0 8.0 13.1 241.7 0.0 -4,-1 0.3425 2 7.394 MINOR ENSMUSG00000038188 Scarf1 ENSMUST00000118243 ENSMUSP00000114090 TRANSLATION protein_coding - - 1 478.0 0.0 6.25 0.0 42.7 2.0 4,-1 0.837 6 6.0 ALTERNATIVE:2 ENSMUSG00000038188 Scarf1 ENSMUST00000042808 ENSMUSP00000044248 TRANSLATION protein_coding - CCDS25050.1 1 820.0 0.0 6.25 0.0 42.7 2.0 4,-1 0.7098 9 6.0 PRINCIPAL:3 ENSMUSG00000038188 Scarf1 ENSMUST00000123819 ENSMUSP00000120097 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.5 0.0 0.0 0.0 4,-1 0.0014 - -2.0 MINOR ENSMUSG00000045288 Ush1g ENSMUST00000103037 ENSMUSP00000099326 TRANSLATION protein_coding - CCDS25627.1 1 461.0 0.0 0.84 9.4 95.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000070345 Hsf5 ENSMUST00000093956 ENSMUSP00000091488 TRANSLATION protein_coding - CCDS36269.1 5 624.0 0.0 0.16 4.3 56.4 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047511 Or2v2 ENSMUST00000215553 ENSMUSP00000150961 TRANSLATION protein_coding - CCDS24596.2 5 315.0 0.0 1.0 9.9 156.6 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047511 Or2v2 ENSMUST00000203007 ENSMUSP00000145057 TRANSLATION protein_coding - CCDS24596.2 - 315.0 0.0 1.0 9.9 156.6 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047511 Or2v2 ENSMUST00000060398 ENSMUSP00000056876 TRANSLATION protein_coding - CCDS24596.2 5 315.0 0.0 1.0 9.9 156.6 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047511 Or2v2 ENSMUST00000109201 ENSMUSP00000104824 TRANSLATION protein_coding - CCDS24596.2 3 315.0 0.0 1.0 9.9 156.6 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020288 Ahsa2 ENSMUST00000020529 ENSMUSP00000020529 TRANSLATION protein_coding - CCDS24476.1 1 331.0 0.0 5.95 4.2 186.4 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000020288 Ahsa2 ENSMUST00000124801 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020288 Ahsa2 ENSMUST00000128372 ENSMUSP00000121255 TRANSLATION protein_coding start - 1 317.0 0.0 5.95 0.0 186.4 0.0 -4,-5 0.0328 5 -2.0 MINOR ENSMUSG00000020288 Ahsa2 ENSMUST00000122864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020288 Ahsa2 ENSMUST00000153409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020288 Ahsa2 ENSMUST00000128559 ENSMUSP00000115134 TRANSLATION protein_coding stop - 2 199.0 0.0 3.05 0.0 113.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020288 Ahsa2 ENSMUST00000109539 ENSMUSP00000105166 TRANSLATION protein_coding - CCDS70149.1 1 283.0 0.0 5.35 0.4 163.3 0.0 -4,-5 0.0244 5 9.414 MINOR ENSMUSG00000020288 Ahsa2 ENSMUST00000147157 ENSMUSP00000121920 TRANSLATION protein_coding stop - 3 200.0 0.0 3.1 0.0 59.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020392 Cdkn2aipnl ENSMUST00000127136 ENSMUSP00000120062 TRANSLATION nonsense_mediated_decay start - 3 51.0 0.0 0.75 0.0 30.7 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000020392 Cdkn2aipnl ENSMUST00000102763 ENSMUSP00000099824 TRANSLATION protein_coding - CCDS24663.1 1 116.0 0.0 2.75 11.0 103.1 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000020321 Mdh1 ENSMUST00000146146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020321 Mdh1 ENSMUST00000102874 ENSMUSP00000099938 TRANSLATION protein_coding - CCDS24466.1 1 334.0 24.0 8.33 34.9 296.4 0.0 -4,-7 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000020321 Mdh1 ENSMUST00000239073 ENSMUSP00000159017 TRANSLATION protein_coding - CCDS24466.1 - 334.0 24.0 8.33 34.9 296.4 0.0 -4,-7 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000020321 Mdh1 ENSMUST00000125302 ENSMUSP00000119816 TRANSLATION protein_coding stop - 3 155.0 17.0 4.0 0.0 139.1 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000020321 Mdh1 ENSMUST00000144978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020321 Mdh1 ENSMUST00000238916 ENSMUSP00000159049 TRANSLATION protein_coding - - - 355.0 24.0 8.33 4.4 296.4 0.0 -4,-7 0.2148 - -2.0 MINOR ENSMUSG00000046974 BC053393 ENSMUST00000050937 ENSMUSP00000050057 TRANSLATION protein_coding - CCDS24580.1 1 192.0 0.0 1.0 0.0 44.5 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050270 Tmem220 ENSMUST00000061786 ENSMUSP00000057366 TRANSLATION protein_coding - CCDS70209.1 1 167.0 0.0 4.83 6.3 101.7 3.0 1,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050270 Tmem220 ENSMUST00000079077 ENSMUSP00000078084 TRANSLATION protein_coding - CCDS24850.1 1 191.0 0.0 4.08 0.0 85.8 3.0 0,-3 0.0398 - 9.546 MINOR ENSMUSG00000034412 Tbc1d10a ENSMUST00000180088 ENSMUSP00000136453 TRANSLATION protein_coding - CCDS56756.1 1 500.0 0.0 6.75 5.0 179.7 0.0 -4,-6 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000034412 Tbc1d10a ENSMUST00000041042 ENSMUSP00000036861 TRANSLATION protein_coding - - 1 534.0 0.0 6.75 0.0 179.7 0.0 -4,-2 0.0677 8 12.0 MINOR ENSMUSG00000034412 Tbc1d10a ENSMUST00000149465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034412 Tbc1d10a ENSMUST00000147485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034412 Tbc1d10a ENSMUST00000135089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034412 Tbc1d10a ENSMUST00000151672 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009185 Ccl8 ENSMUST00000009329 ENSMUSP00000009329 TRANSLATION protein_coding - CCDS36248.1 1 97.0 0.0 2.375 3.4 70.8 0.0 4,-1 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000020279 Il9r ENSMUST00000145401 ENSMUSP00000118204 TRANSLATION protein_coding - CCDS24517.1 1 468.0 0.0 1.5 0.1 0.0 2.0 -3,-6 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000020279 Il9r ENSMUST00000128311 ENSMUSP00000119557 TRANSLATION protein_coding - CCDS48765.1 1 469.0 0.0 1.265 0.1 0.0 2.0 -3,-6 0.5703 - 5.058 ALTERNATIVE:2 ENSMUSG00000020279 Il9r ENSMUST00000142396 ENSMUSP00000119185 TRANSLATION protein_coding - - 1 474.0 0.0 1.265 0.1 0.0 2.0 -3,-4 0.177 - 5.058 ALTERNATIVE:2 ENSMUSG00000020279 Il9r ENSMUST00000131979 - NO_TRANSLATION retained_intron ENSMUSG00000020279 Il9r ENSMUST00000020518 ENSMUSP00000020518 TRANSLATION nonsense_mediated_decay - - 5 98.0 0.0 0.5 0.0 0.0 0.0 -3,-6 0.0142 - -2.0 MINOR ENSMUSG00000042363 Lgalsl ENSMUST00000132928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042363 Lgalsl ENSMUST00000144441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042363 Lgalsl ENSMUST00000047028 ENSMUSP00000044342 TRANSLATION protein_coding - CCDS24461.1 1 172.0 0.0 3.15 25.2 99.6 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000042363 Lgalsl ENSMUST00000154300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069763 Tmem100 ENSMUST00000092788 ENSMUSP00000090464 TRANSLATION protein_coding - CCDS25239.1 1 134.0 0.0 0.6 23.7 201.1 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000078652 Psme3 ENSMUST00000127998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078652 Psme3 ENSMUST00000151385 ENSMUSP00000116996 TRANSLATION protein_coding stop - 5 203.0 0.0 3.71 0.0 206.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000078652 Psme3 ENSMUST00000019470 ENSMUSP00000019470 TRANSLATION protein_coding - CCDS25463.1 1 254.0 0.0 5.64 31.9 306.6 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000078652 Psme3 ENSMUST00000142640 ENSMUSP00000118279 TRANSLATION protein_coding stop - 3 154.0 0.0 2.03 0.0 87.5 0.0 -4,-5 0.0001 6 -2.0 MINOR ENSMUSG00000078652 Psme3 ENSMUST00000131170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044847 Lsm11 ENSMUST00000129820 ENSMUSP00000117531 TRANSLATION protein_coding - CCDS36131.1 1 361.0 0.0 1.666 5.8 0.0 0.0 -4,-7 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000044847 Lsm11 ENSMUST00000062458 ENSMUSP00000057343 TRANSLATION nonsense_mediated_decay - CCDS36131.1 1 361.0 0.0 1.666 5.8 0.0 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000019761 Krt10 ENSMUST00000103131 ENSMUSP00000099420 TRANSLATION protein_coding - CCDS25380.1 1 561.0 0.0 4.25 0.0 389.4 0.0 -4,-2 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000019761 Krt10 ENSMUST00000211768 ENSMUSP00000148044 TRANSLATION protein_coding start - 3 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000064165 Krt39 ENSMUST00000076948 ENSMUSP00000076216 TRANSLATION protein_coding - CCDS25383.1 1 482.0 0.0 3.4 1.1 316.2 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000064165 Krt39 ENSMUST00000107445 ENSMUSP00000103069 TRANSLATION protein_coding - CCDS25383.1 5 482.0 0.0 3.4 1.1 316.2 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000018486 Wnt9b ENSMUST00000018630 ENSMUSP00000018630 TRANSLATION protein_coding - CCDS25522.1 1 359.0 0.0 1.64 0.0 319.4 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020907 Rcvrn ENSMUST00000021290 ENSMUSP00000021290 TRANSLATION protein_coding - CCDS24859.1 1 202.0 12.0 3.0 16.0 63.2 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000025140 Pycr1 ENSMUST00000151876 ENSMUSP00000120558 TRANSLATION protein_coding stop - 5 164.0 16.0 3.75 0.0 76.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025140 Pycr1 ENSMUST00000026133 ENSMUSP00000026133 TRANSLATION protein_coding - CCDS25749.1 1 309.0 21.0 7.33 0.1 210.1 0.0 -1,-4 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000025140 Pycr1 ENSMUST00000170556 ENSMUSP00000131199 TRANSLATION protein_coding - CCDS25749.1 1 309.0 21.0 7.33 0.1 210.1 0.0 -1,-4 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000025140 Pycr1 ENSMUST00000139706 ENSMUSP00000117737 TRANSLATION protein_coding stop - 3 158.0 21.0 3.58 0.0 81.8 0.0 -1,-4 0.0 6 -2.0 MINOR ENSMUSG00000025140 Pycr1 ENSMUST00000141254 ENSMUSP00000114863 TRANSLATION protein_coding stop - 5 238.0 21.0 6.08 0.0 174.6 0.0 -1,-4 0.0 7 -2.0 MINOR ENSMUSG00000025140 Pycr1 ENSMUST00000133908 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000123192 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000178369 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000108530 ENSMUSP00000104170 TRANSLATION protein_coding - CCDS36207.1 1 742.0 0.0 0.0 10.3 1026.5 0.0 -4,-5 1.0 11 9.0 PRINCIPAL:1 ENSMUSG00000040667 Nup88 ENSMUST00000129615 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000123917 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000128193 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000141179 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000148168 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000178253 ENSMUSP00000137024 TRANSLATION nonsense_mediated_decay start - 1 122.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000040667 Nup88 ENSMUST00000180225 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000035283 ENSMUSP00000048101 TRANSLATION protein_coding - CCDS36206.1 1 753.0 0.0 0.0 0.0 1009.0 0.0 -4,-5 0.203 11 4.95 MINOR ENSMUSG00000040667 Nup88 ENSMUST00000133188 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000138634 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000145336 - NO_TRANSLATION retained_intron ENSMUSG00000040667 Nup88 ENSMUST00000108531 ENSMUSP00000104171 TRANSLATION protein_coding - CCDS70233.1 1 747.0 0.0 0.0 6.9 1020.5 0.0 -4,-5 0.71 11 7.542 MINOR ENSMUSG00000000753 Serpinf1 ENSMUST00000167281 ENSMUSP00000133230 TRANSLATION nonsense_mediated_decay start - 3 125.0 0.0 2.75 0.0 53.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000000753 Serpinf1 ENSMUST00000138661 ENSMUSP00000121180 TRANSLATION protein_coding stop - 3 206.0 0.0 4.65 0.0 95.2 0.0 3,-1 0.0 6 -2.0 MINOR ENSMUSG00000000753 Serpinf1 ENSMUST00000000769 ENSMUSP00000000769 TRANSLATION protein_coding - CCDS25045.1 1 417.0 0.0 7.65 14.5 280.3 0.0 3,-1 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000000753 Serpinf1 ENSMUST00000139403 - NO_TRANSLATION retained_intron ENSMUSG00000000753 Serpinf1 ENSMUST00000168902 ENSMUSP00000131043 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.15 0.0 0.0 0.0 3,-1 0.0007 - -2.0 MINOR ENSMUSG00000000753 Serpinf1 ENSMUST00000125982 ENSMUSP00000126807 TRANSLATION protein_coding - - 1 147.0 0.0 2.9 0.0 57.7 0.0 3,-1 0.0006 4 0.0 MINOR ENSMUSG00000000753 Serpinf1 ENSMUST00000137103 ENSMUSP00000114761 TRANSLATION protein_coding stop - 3 213.0 0.0 4.65 0.0 98.6 0.0 3,-1 0.0 6 -2.0 MINOR ENSMUSG00000000753 Serpinf1 ENSMUST00000155009 ENSMUSP00000131531 TRANSLATION protein_coding stop - 2 64.0 0.0 1.15 0.0 0.0 0.0 3,-1 0.0022 - -2.0 MINOR ENSMUSG00000013483 Card14 ENSMUST00000147167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013483 Card14 ENSMUST00000151052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013483 Card14 ENSMUST00000106250 ENSMUSP00000101857 TRANSLATION protein_coding - CCDS25715.1 5 999.0 0.0 3.195 6.8 80.0 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000013483 Card14 ENSMUST00000053245 ENSMUSP00000053665 TRANSLATION protein_coding - CCDS25715.1 1 999.0 0.0 3.195 6.8 80.0 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000020830 Vmo1 ENSMUST00000021179 ENSMUSP00000021179 TRANSLATION protein_coding - CCDS24951.1 2 201.0 0.0 1.5 2.4 207.7 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000016984 Etaa1 ENSMUST00000076661 ENSMUSP00000075957 TRANSLATION protein_coding - CCDS24452.1 1 877.0 0.0 0.0 0.0 1078.4 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000034177 Rnf43 ENSMUST00000124625 - NO_TRANSLATION retained_intron ENSMUSG00000034177 Rnf43 ENSMUST00000134684 - NO_TRANSLATION retained_intron ENSMUSG00000034177 Rnf43 ENSMUST00000092800 ENSMUSP00000090476 TRANSLATION protein_coding - CCDS25215.2 5 784.0 8.0 5.0 5.3 44.4 1.0 1,-3 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000034177 Rnf43 ENSMUST00000040089 ENSMUSP00000044241 TRANSLATION protein_coding - - 1 657.0 8.0 3.2 2.3 44.4 1.0 -4,-5 0.2795 - 15.004 MINOR ENSMUSG00000034177 Rnf43 ENSMUST00000165679 ENSMUSP00000130685 TRANSLATION protein_coding - CCDS25215.2 5 784.0 8.0 5.0 5.3 44.4 1.0 1,-3 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000034177 Rnf43 ENSMUST00000150866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034177 Rnf43 ENSMUST00000123658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034177 Rnf43 ENSMUST00000121782 ENSMUSP00000112748 TRANSLATION protein_coding - - 5 743.0 8.0 4.0 0.0 44.4 1.0 1,-3 0.0693 - 16.002 MINOR ENSMUSG00000034177 Rnf43 ENSMUST00000162740 - NO_TRANSLATION retained_intron ENSMUSG00000098650 Commd1b ENSMUST00000160826 ENSMUSP00000125609 TRANSLATION protein_coding,RT start - 5 99.0 0.0 1.0 0.0 98.3 0.0 -4,-5 0.7815 - -2.0 PRINCIPAL:1 ENSMUSG00000018425 Dhx40 ENSMUST00000136977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018425 Dhx40 ENSMUST00000148263 ENSMUSP00000114918 TRANSLATION protein_coding start/stop - 5 304.0 0.0 6.2 0.0 56.9 0.0 -4,-5 0.0009 5 -2.0 MINOR ENSMUSG00000018425 Dhx40 ENSMUST00000131798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018425 Dhx40 ENSMUST00000018569 ENSMUSP00000018569 TRANSLATION protein_coding - CCDS36268.1 1 779.0 12.0 11.345 8.9 191.6 0.0 -4,-2 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000007850 Hnrnph1 ENSMUST00000141668 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000127964 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000123371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000132715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000109142 ENSMUSP00000104770 TRANSLATION protein_coding - CCDS24634.1 1 449.0 0.0 7.25 12.5 188.6 0.0 -4,-5 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000007850 Hnrnph1 ENSMUST00000069304 ENSMUSP00000070503 TRANSLATION protein_coding - CCDS24634.1 1 449.0 0.0 7.25 12.5 188.6 0.0 -4,-5 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000007850 Hnrnph1 ENSMUST00000156642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000150153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000077817 ENSMUSP00000076989 TRANSLATION protein_coding - CCDS83800.1 1 472.0 0.0 7.25 11.4 188.6 0.0 -4,-5 0.9514 5 10.712 ALTERNATIVE:1 ENSMUSG00000007850 Hnrnph1 ENSMUST00000126737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000129631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000128220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000133435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000140056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000150657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000151537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000134230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007850 Hnrnph1 ENSMUST00000143301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020891 Alox8 ENSMUST00000144787 - NO_TRANSLATION retained_intron ENSMUSG00000020891 Alox8 ENSMUST00000156157 - NO_TRANSLATION retained_intron ENSMUSG00000020891 Alox8 ENSMUST00000021262 ENSMUSP00000021262 TRANSLATION protein_coding - CCDS24886.1 1 677.0 5.0 13.5 5.9 82.4 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000020891 Alox8 ENSMUST00000094078 ENSMUSP00000091621 TRANSLATION protein_coding - - 5 648.0 5.0 12.75 1.7 82.4 0.0 -4,-6 0.1999 - 15.786 MINOR ENSMUSG00000020732 Rab37 ENSMUST00000067754 ENSMUSP00000065016 TRANSLATION protein_coding - CCDS48979.1 1 216.0 23.0 5.13 8.4 199.3 0.0 -4,-5 0.9992 5 17.0 ALTERNATIVE:1 ENSMUSG00000020732 Rab37 ENSMUST00000131046 - NO_TRANSLATION retained_intron ENSMUSG00000020732 Rab37 ENSMUST00000021076 ENSMUSP00000021076 TRANSLATION protein_coding - CCDS25620.1 1 223.0 23.0 5.03 6.2 201.3 0.0 -4,-5 1.0 6 15.911 PRINCIPAL:3 ENSMUSG00000020732 Rab37 ENSMUST00000156383 - NO_TRANSLATION retained_intron ENSMUSG00000000751 Rpa1 ENSMUST00000135770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000751 Rpa1 ENSMUST00000092907 ENSMUSP00000090585 TRANSLATION protein_coding - CCDS25044.1 1 623.0 5.0 12.93 2.8 450.4 0.0 -4,-5 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000000751 Rpa1 ENSMUST00000154894 - NO_TRANSLATION retained_intron ENSMUSG00000000751 Rpa1 ENSMUST00000149365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000751 Rpa1 ENSMUST00000000767 ENSMUSP00000000767 TRANSLATION protein_coding - CCDS48847.1 1 644.0 5.0 12.18 0.0 432.4 0.0 -4,-5 0.0737 20 14.42 MINOR ENSMUSG00000040405 Havcr1 ENSMUST00000047568 ENSMUSP00000043827 TRANSLATION protein_coding - CCDS24583.1 1 305.0 4.0 1.0 0.0 58.7 2.0 3,-2 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000040405 Havcr1 ENSMUST00000109224 ENSMUSP00000104847 TRANSLATION protein_coding stop - 3 168.0 4.0 1.0 0.0 60.5 0.0 3,-2 0.1642 - -2.0 MINOR ENSMUSG00000040405 Havcr1 ENSMUST00000081819 ENSMUSP00000080503 TRANSLATION protein_coding - CCDS48778.1 1 282.0 4.0 1.0 0.0 58.7 2.0 3,-2 0.4458 - 12.0 ALTERNATIVE:2 ENSMUSG00000040405 Havcr1 ENSMUST00000109223 ENSMUSP00000104846 TRANSLATION protein_coding - CCDS48778.1 1 282.0 4.0 1.0 0.0 58.7 2.0 3,-2 0.4458 - 12.0 ALTERNATIVE:2 ENSMUSG00000047284 Neurl4 ENSMUST00000177138 ENSMUSP00000135277 TRANSLATION protein_coding - CCDS70221.1 1 1539.0 0.0 8.06 0.1 840.7 0.0 -4,-5 0.5934 16 6.0 ALTERNATIVE:2 ENSMUSG00000047284 Neurl4 ENSMUST00000175742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047284 Neurl4 ENSMUST00000143861 - NO_TRANSLATION retained_intron ENSMUSG00000047284 Neurl4 ENSMUST00000132183 ENSMUSP00000118868 TRANSLATION protein_coding start - 5 216.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 4 -2.0 MINOR ENSMUSG00000047284 Neurl4 ENSMUST00000133203 ENSMUSP00000117917 TRANSLATION nonsense_mediated_decay start - 5 972.0 0.0 6.06 0.0 654.0 0.0 -4,-5 0.0249 7 -2.0 MINOR ENSMUSG00000047284 Neurl4 ENSMUST00000177160 - NO_TRANSLATION retained_intron ENSMUSG00000047284 Neurl4 ENSMUST00000061837 ENSMUSP00000053235 TRANSLATION protein_coding - CCDS24921.1 5 1563.0 0.0 8.06 0.1 845.0 0.0 -4,-5 1.0 16 6.0 PRINCIPAL:4 ENSMUSG00000047284 Neurl4 ENSMUST00000129475 ENSMUSP00000135733 TRANSLATION nonsense_mediated_decay start - 5 249.0 0.0 3.51 0.0 178.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000047284 Neurl4 ENSMUST00000153041 - NO_TRANSLATION retained_intron ENSMUSG00000047284 Neurl4 ENSMUST00000175761 - NO_TRANSLATION retained_intron ENSMUSG00000047284 Neurl4 ENSMUST00000176614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047284 Neurl4 ENSMUST00000177476 ENSMUSP00000135185 TRANSLATION protein_coding - CCDS70220.1 1 1561.0 0.0 8.06 0.1 840.7 0.0 -4,-5 0.8928 16 6.0 ALTERNATIVE:2 ENSMUSG00000047284 Neurl4 ENSMUST00000108617 ENSMUSP00000104257 TRANSLATION protein_coding - - 5 1541.0 0.0 8.06 0.1 845.0 0.0 -4,-5 0.4404 16 6.0 ALTERNATIVE:2 ENSMUSG00000020734 Grin2c ENSMUST00000106554 ENSMUSP00000102164 TRANSLATION protein_coding - CCDS25624.1 5 1239.0 14.0 9.2 0.1 309.3 3.0 2,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000020734 Grin2c ENSMUST00000003351 ENSMUSP00000003351 TRANSLATION protein_coding - CCDS25624.1 5 1239.0 14.0 9.2 0.1 309.3 3.0 2,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000050675 Gp1ba ENSMUST00000055184 ENSMUSP00000057563 TRANSLATION protein_coding - CCDS24957.1 5 734.0 0.0 0.6 0.0 71.6 1.0 4,-1 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000050675 Gp1ba ENSMUST00000108551 ENSMUSP00000104191 TRANSLATION protein_coding - CCDS24957.1 1 734.0 0.0 0.6 0.0 71.6 1.0 4,-1 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000039670 Oxld1 ENSMUST00000137632 ENSMUSP00000135197 TRANSLATION protein_coding start/stop - 1 124.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0297 - -2.0 MINOR ENSMUSG00000039670 Oxld1 ENSMUST00000044007 ENSMUSP00000036860 TRANSLATION protein_coding - CCDS25735.1 1 201.0 0.0 1.0 0.1 0.0 0.0 -3,0 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070375 Or1p1c ENSMUST00000133561 ENSMUSP00000125963 TRANSLATION protein_coding - CCDS36222.1 - 323.0 0.0 1.0 2.4 189.1 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000070375 Or1p1c ENSMUST00000214303 ENSMUSP00000150802 TRANSLATION protein_coding - CCDS36222.1 5 323.0 0.0 1.0 2.4 189.1 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000070375 Or1p1c ENSMUST00000217016 ENSMUSP00000148929 TRANSLATION protein_coding - CCDS36222.1 5 323.0 0.0 1.0 2.4 189.1 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000009210 Prr29 ENSMUST00000185986 ENSMUSP00000140365 TRANSLATION protein_coding - - 5 180.0 0.0 1.2 4.0 72.6 0.0 -4,-7 0.5467 - 12.896 MINOR ENSMUSG00000009210 Prr29 ENSMUST00000188561 ENSMUSP00000140194 TRANSLATION protein_coding - - 5 107.0 0.0 1.2 1.0 63.1 0.0 -4,-7 0.0819 - 11.214 MINOR ENSMUSG00000009210 Prr29 ENSMUST00000106816 ENSMUSP00000102429 TRANSLATION protein_coding - CCDS48962.1 1 187.0 0.0 1.2 7.7 72.6 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000009210 Prr29 ENSMUST00000190795 ENSMUSP00000140541 TRANSLATION protein_coding - - 5 137.0 0.0 1.0 1.0 52.8 0.0 -4,-6 0.0134 - 9.36 MINOR ENSMUSG00000009210 Prr29 ENSMUST00000009354 ENSMUSP00000009354 TRANSLATION protein_coding - - 1 137.0 0.0 1.0 1.0 52.8 0.0 -4,-6 0.0134 - 9.36 MINOR ENSMUSG00000009210 Prr29 ENSMUST00000190268 ENSMUSP00000139960 TRANSLATION protein_coding - - 5 241.0 0.0 1.2 0.0 72.6 0.0 -4,-7 0.036 - 12.0 MINOR ENSMUSG00000020290 Xpo1 ENSMUST00000102870 ENSMUSP00000099934 TRANSLATION protein_coding - CCDS24475.1 5 1071.0 0.0 23.25 36.2 634.3 0.0 -4,-6 1.0 35 16.0 PRINCIPAL:1 ENSMUSG00000020290 Xpo1 ENSMUST00000136235 ENSMUSP00000123634 TRANSLATION protein_coding stop - 3 59.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020290 Xpo1 ENSMUST00000102869 ENSMUSP00000099933 TRANSLATION protein_coding - CCDS24475.1 1 1071.0 0.0 23.25 36.2 634.3 0.0 -4,-6 1.0 35 16.0 PRINCIPAL:1 ENSMUSG00000020290 Xpo1 ENSMUST00000149371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020290 Xpo1 ENSMUST00000150750 ENSMUSP00000117846 TRANSLATION protein_coding start/stop - 5 233.0 0.0 4.75 0.0 65.7 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000010554 Mettl16 ENSMUST00000092912 ENSMUSP00000090590 TRANSLATION nonsense_mediated_decay - - 1 215.0 21.0 4.33 0.0 314.1 0.0 -4,-7 0.0007 4 -2.0 MINOR ENSMUSG00000010554 Mettl16 ENSMUST00000144692 - NO_TRANSLATION retained_intron ENSMUSG00000010554 Mettl16 ENSMUST00000128504 ENSMUSP00000122272 TRANSLATION protein_coding stop - 2 33.0 0.0 1.0 0.0 38.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000010554 Mettl16 ENSMUST00000010698 ENSMUSP00000010698 TRANSLATION protein_coding - - 1 593.0 22.0 7.08 0.0 431.8 0.0 -4,-7 0.0081 11 14.832 MINOR ENSMUSG00000010554 Mettl16 ENSMUST00000134571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010554 Mettl16 ENSMUST00000141755 ENSMUSP00000114682 TRANSLATION protein_coding - CCDS25036.1 1 553.0 22.0 8.08 8.1 451.3 0.0 -4,-7 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000078255 Krtap9-5 ENSMUST00000105052 ENSMUSP00000100673 TRANSLATION protein_coding - CCDS48926.1 - 358.0 0.0 0.0 0.0 119.8 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044950 Pwwp2a ENSMUST00000148461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044950 Pwwp2a ENSMUST00000129229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044950 Pwwp2a ENSMUST00000094294 ENSMUSP00000091852 TRANSLATION protein_coding - CCDS48773.1 5 533.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0405 2 2.0 MINOR ENSMUSG00000044950 Pwwp2a ENSMUST00000130467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044950 Pwwp2a ENSMUST00000061070 ENSMUSP00000054154 TRANSLATION protein_coding - CCDS48774.1 1 730.0 2.0 0.8 0.0 43.4 0.0 -4,-5 1.0 2 10.0 PRINCIPAL:2 ENSMUSG00000044950 Pwwp2a ENSMUST00000109280 ENSMUSP00000104903 TRANSLATION protein_coding - - 2 455.0 2.0 0.8 0.0 43.4 0.0 -4,-5 0.0745 - 10.0 ALTERNATIVE:2 ENSMUSG00000017747 Ghdc ENSMUST00000147682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017747 Ghdc ENSMUST00000139341 ENSMUSP00000114260 TRANSLATION protein_coding stop - 2 118.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0017 2 -2.0 MINOR ENSMUSG00000017747 Ghdc ENSMUST00000017891 ENSMUSP00000017891 TRANSLATION protein_coding - CCDS25437.1 1 532.0 8.0 1.97 0.0 203.3 0.0 3,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000017499 Cdc6 ENSMUST00000093937 ENSMUSP00000091469 TRANSLATION protein_coding - CCDS25367.1 1 589.0 17.0 5.575 0.0 110.5 0.0 -4,-6 0.1202 1 18.0 MINOR ENSMUSG00000017499 Cdc6 ENSMUST00000092706 ENSMUSP00000090382 TRANSLATION protein_coding - CCDS25368.1 1 562.0 17.0 5.575 7.3 110.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000017499 Cdc6 ENSMUST00000135862 - NO_TRANSLATION retained_intron ENSMUSG00000017499 Cdc6 ENSMUST00000133779 ENSMUSP00000118421 TRANSLATION nonsense_mediated_decay - - 1 417.0 17.0 4.5 0.0 47.1 0.0 -4,-5 0.0002 1 -2.0 MINOR ENSMUSG00000037335 Hand1 ENSMUST00000108845 ENSMUSP00000104473 TRANSLATION protein_coding stop - 5 31.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000037335 Hand1 ENSMUST00000160392 ENSMUSP00000124951 TRANSLATION protein_coding - CCDS24721.1 1 216.0 0.0 0.6 11.0 60.3 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037335 Hand1 ENSMUST00000036917 ENSMUSP00000046999 TRANSLATION protein_coding - CCDS24721.1 1 216.0 0.0 0.6 11.0 60.3 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062278 Gm11562 ENSMUST00000073853 ENSMUSP00000073519 TRANSLATION protein_coding - CCDS56800.1 - 136.0 0.0 0.0 6.9 27.8 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000020903 Stx8 ENSMUST00000148642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020903 Stx8 ENSMUST00000021286 ENSMUSP00000021286 TRANSLATION protein_coding - - 1 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 1 0.0 MINOR ENSMUSG00000020903 Stx8 ENSMUST00000108675 ENSMUSP00000104315 TRANSLATION protein_coding - - 1 126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - 0.0 MINOR ENSMUSG00000020903 Stx8 ENSMUST00000142649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020903 Stx8 ENSMUST00000129992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020903 Stx8 ENSMUST00000021285 ENSMUSP00000021285 TRANSLATION protein_coding - CCDS24863.1 1 236.0 0.0 2.0 29.9 35.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000017288 Vps53 ENSMUST00000129256 ENSMUSP00000126125 TRANSLATION protein_coding - - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000017288 Vps53 ENSMUST00000140886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017288 Vps53 ENSMUST00000169734 ENSMUSP00000130499 TRANSLATION nonsense_mediated_decay - - 5 334.0 0.0 0.0 0.0 456.8 0.0 -4,-5 0.0002 3 -2.0 MINOR ENSMUSG00000017288 Vps53 ENSMUST00000166084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017288 Vps53 ENSMUST00000167114 ENSMUSP00000131663 TRANSLATION protein_coding stop - 5 419.0 0.0 0.0 0.0 115.4 0.0 -4,-5 0.0012 7 -2.0 MINOR ENSMUSG00000017288 Vps53 ENSMUST00000166436 ENSMUSP00000131387 TRANSLATION protein_coding start/stop - 5 204.0 0.0 0.0 0.0 294.2 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000017288 Vps53 ENSMUST00000108419 ENSMUSP00000104057 TRANSLATION protein_coding - - 1 655.0 0.0 0.0 0.0 325.5 0.0 -4,-5 0.0026 15 0.0 MINOR ENSMUSG00000017288 Vps53 ENSMUST00000166752 ENSMUSP00000129159 TRANSLATION nonsense_mediated_decay - - 5 547.0 0.0 0.0 0.0 482.2 0.0 -4,-5 0.0068 7 -2.0 MINOR ENSMUSG00000017288 Vps53 ENSMUST00000141773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017288 Vps53 ENSMUST00000143163 - NO_TRANSLATION retained_intron ENSMUSG00000017288 Vps53 ENSMUST00000143459 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017288 Vps53 ENSMUST00000094015 ENSMUSP00000091554 TRANSLATION protein_coding - - 5 803.0 0.0 0.0 0.0 440.7 0.0 -4,-5 0.0321 17 0.0 MINOR ENSMUSG00000017288 Vps53 ENSMUST00000056601 ENSMUSP00000061317 TRANSLATION protein_coding - CCDS25060.1 1 832.0 0.0 0.0 10.1 575.9 0.0 -4,-5 1.0 18 9.0 PRINCIPAL:1 ENSMUSG00000017288 Vps53 ENSMUST00000170143 - NO_TRANSLATION retained_intron ENSMUSG00000017288 Vps53 ENSMUST00000163878 ENSMUSP00000128856 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017288 Vps53 ENSMUST00000170730 ENSMUSP00000127364 TRANSLATION protein_coding stop - 5 123.0 0.0 0.0 0.0 106.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000061952 Or1ad1 ENSMUST00000075177 ENSMUSP00000074672 TRANSLATION protein_coding - CCDS24645.1 - 307.0 0.0 1.0 5.4 173.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061952 Or1ad1 ENSMUST00000216101 ENSMUSP00000151087 TRANSLATION protein_coding - CCDS24645.1 3 307.0 0.0 1.0 5.4 173.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061952 Or1ad1 ENSMUST00000213291 ENSMUSP00000149125 TRANSLATION protein_coding - CCDS24645.1 5 307.0 0.0 1.0 5.4 173.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020610 Amz2 ENSMUST00000155036 - NO_TRANSLATION retained_intron ENSMUSG00000020610 Amz2 ENSMUST00000103061 ENSMUSP00000099350 TRANSLATION protein_coding - - 1 359.0 8.0 0.35 15.3 49.2 0.0 -4,-5 1.0 6 21.94 PRINCIPAL:1 ENSMUSG00000020610 Amz2 ENSMUST00000154875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020610 Amz2 ENSMUST00000131181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020610 Amz2 ENSMUST00000020929 ENSMUSP00000020929 TRANSLATION protein_coding - - 2 322.0 8.0 0.35 0.0 49.7 0.0 -4,-5 0.0569 5 18.0 MINOR ENSMUSG00000020610 Amz2 ENSMUST00000092500 ENSMUSP00000090157 TRANSLATION protein_coding - CCDS25579.1 1 363.0 8.0 0.35 0.0 49.2 0.0 -4,-5 0.2976 6 17.94 MINOR ENSMUSG00000020610 Amz2 ENSMUST00000238825 ENSMUSP00000159063 TRANSLATION protein_coding - CCDS25579.1 - 363.0 8.0 0.35 0.0 49.2 0.0 -4,-5 0.2976 6 17.94 MINOR ENSMUSG00000020610 Amz2 ENSMUST00000125108 - NO_TRANSLATION retained_intron ENSMUSG00000020610 Amz2 ENSMUST00000141739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020388 Pdlim4 ENSMUST00000018755 ENSMUSP00000018755 TRANSLATION protein_coding - CCDS24690.1 1 330.0 7.0 4.45 9.6 160.4 0.0 -4,-1 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000020388 Pdlim4 ENSMUST00000144477 ENSMUSP00000121248 TRANSLATION protein_coding stop - 5 121.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020388 Pdlim4 ENSMUST00000127271 - NO_TRANSLATION retained_intron ENSMUSG00000020388 Pdlim4 ENSMUST00000151948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020388 Pdlim4 ENSMUST00000093109 ENSMUSP00000090797 TRANSLATION protein_coding - - 5 246.0 0.0 2.5 6.5 106.3 0.0 -4,-1 0.2377 9 6.774 MINOR ENSMUSG00000001493 Meox1 ENSMUST00000057054 ENSMUSP00000051158 TRANSLATION protein_coding - CCDS25480.1 1 253.0 0.0 2.0 11.1 79.4 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044052 Ccr10 ENSMUST00000062759 ENSMUSP00000062588 TRANSLATION protein_coding - CCDS25454.1 1 362.0 0.0 0.6 9.7 142.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057594 Arl16 ENSMUST00000150688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057594 Arl16 ENSMUST00000125806 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057594 Arl16 ENSMUST00000137639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057594 Arl16 ENSMUST00000143233 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057594 Arl16 ENSMUST00000141654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057594 Arl16 ENSMUST00000128824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057594 Arl16 ENSMUST00000124970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057594 Arl16 ENSMUST00000122973 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057594 Arl16 ENSMUST00000076921 ENSMUSP00000076188 TRANSLATION protein_coding - CCDS36390.1 1 173.0 14.0 4.25 17.6 79.5 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000057594 Arl16 ENSMUST00000154136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057594 Arl16 ENSMUST00000152641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020359 Phykpl ENSMUST00000020625 ENSMUSP00000020625 TRANSLATION protein_coding - - 1 468.0 14.0 10.5 0.0 269.2 0.0 -4,-2 0.7888 10 14.0 PRINCIPAL:4 ENSMUSG00000020359 Phykpl ENSMUST00000156128 - NO_TRANSLATION retained_intron ENSMUSG00000020359 Phykpl ENSMUST00000167797 ENSMUSP00000132190 TRANSLATION protein_coding - CCDS24653.1 1 467.0 14.0 10.5 0.0 269.2 0.0 -4,-2 0.763 10 14.0 ALTERNATIVE:2 ENSMUSG00000020359 Phykpl ENSMUST00000109105 - NO_TRANSLATION retained_intron ENSMUSG00000020359 Phykpl ENSMUST00000169995 - NO_TRANSLATION retained_intron ENSMUSG00000020359 Phykpl ENSMUST00000101250 ENSMUSP00000098808 TRANSLATION nonsense_mediated_decay - - 1 231.0 8.0 5.25 0.0 92.5 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000020359 Phykpl ENSMUST00000164864 - NO_TRANSLATION retained_intron ENSMUSG00000020359 Phykpl ENSMUST00000169823 - NO_TRANSLATION retained_intron ENSMUSG00000078627 Marchf10 ENSMUST00000049995 ENSMUSP00000063198 TRANSLATION protein_coding - CCDS48955.1 5 788.0 8.0 2.4 0.4 46.5 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000078627 Marchf10 ENSMUST00000138977 ENSMUSP00000121919 TRANSLATION protein_coding - CCDS48955.1 5 788.0 8.0 2.4 0.4 46.5 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000078627 Marchf10 ENSMUST00000151305 ENSMUSP00000118401 TRANSLATION protein_coding start/stop - 3 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078627 Marchf10 ENSMUST00000100332 ENSMUSP00000097906 TRANSLATION protein_coding - CCDS25540.1 1 237.0 0.0 0.0 3.6 0.0 0.0 -4,-5 0.6104 1 1.0 MINOR ENSMUSG00000078627 Marchf10 ENSMUST00000130685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064010 Dppa1 ENSMUST00000109227 ENSMUSP00000104850 TRANSLATION protein_coding - CCDS24581.1 2 116.0 0.0 0.0 0.1 0.0 1.0 4,-1 0.9445 - 0.0 PRINCIPAL:1 ENSMUSG00000064010 Dppa1 ENSMUST00000077173 ENSMUSP00000076416 TRANSLATION protein_coding - CCDS24581.1 1 116.0 0.0 0.0 0.1 0.0 1.0 4,-1 0.9445 - 0.0 PRINCIPAL:1 ENSMUSG00000078789 Dph1 ENSMUST00000156489 - NO_TRANSLATION retained_intron ENSMUSG00000078789 Dph1 ENSMUST00000148944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078789 Dph1 ENSMUST00000044949 ENSMUSP00000042162 TRANSLATION protein_coding - CCDS25042.1 1 438.0 9.0 9.35 6.9 393.1 0.0 -4,-7 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000078789 Dph1 ENSMUST00000139958 ENSMUSP00000116537 TRANSLATION protein_coding stop - 3 275.0 7.0 6.3 0.0 267.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000078789 Dph1 ENSMUST00000150910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007877 Tcap ENSMUST00000008021 ENSMUSP00000008021 TRANSLATION protein_coding - CCDS25346.1 1 167.0 0.0 1.8 11.6 244.6 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000035152 Ap2b1 ENSMUST00000132178 - NO_TRANSLATION retained_intron ENSMUSG00000035152 Ap2b1 ENSMUST00000018875 ENSMUSP00000018875 TRANSLATION protein_coding - CCDS25161.1 1 951.0 0.0 18.65 31.9 711.2 0.0 -4,-5 1.0 24 16.0 PRINCIPAL:1 ENSMUSG00000035152 Ap2b1 ENSMUST00000142680 ENSMUSP00000116562 TRANSLATION protein_coding stop - 2 44.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035152 Ap2b1 ENSMUST00000176430 ENSMUSP00000134779 TRANSLATION protein_coding - - 1 942.0 0.0 17.9 0.0 685.9 0.0 -4,-5 0.0917 20 8.982 MINOR ENSMUSG00000035152 Ap2b1 ENSMUST00000176944 ENSMUSP00000134798 TRANSLATION protein_coding stop - 3 199.0 0.0 5.25 0.0 214.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000035152 Ap2b1 ENSMUST00000176523 ENSMUSP00000135445 TRANSLATION protein_coding - - 5 913.0 0.0 17.9 0.0 556.6 0.0 -4,-5 0.0432 24 4.5 MINOR ENSMUSG00000035152 Ap2b1 ENSMUST00000065692 ENSMUSP00000070714 TRANSLATION protein_coding - CCDS25162.1 1 937.0 0.0 18.65 19.5 711.2 0.0 -4,-5 0.9432 24 14.396 MINOR ENSMUSG00000121577 ENSMUSG00000121577 ENSMUST00000249250 ENSMUSP00000159630 TRANSLATION protein_coding - - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5648 - 0.0 PRINCIPAL:1 ENSMUSG00000018168 Ikzf3 ENSMUST00000140876 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018168 Ikzf3 ENSMUST00000152400 - NO_TRANSLATION retained_intron ENSMUSG00000018168 Ikzf3 ENSMUST00000103141 ENSMUSP00000099430 TRANSLATION protein_coding - CCDS25352.1 5 507.0 18.0 3.25 13.8 44.9 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000018168 Ikzf3 ENSMUST00000153902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055415 Atp10b ENSMUST00000238415 ENSMUSP00000158770 TRANSLATION protein_coding - - - 1446.0 3.0 10.815 0.0 377.9 10.0 -4,-5 0.6036 9 10.64 PRINCIPAL:3 ENSMUSG00000055415 Atp10b ENSMUST00000077659 ENSMUSP00000076844 TRANSLATION protein_coding - CCDS36129.1 5 1474.0 3.0 10.995 0.4 384.3 9.0 -4,-7 0.8161 8 10.5 ALTERNATIVE:2 ENSMUSG00000055415 Atp10b ENSMUST00000148911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025173 Wdr45b ENSMUST00000127373 - NO_TRANSLATION retained_intron ENSMUSG00000025173 Wdr45b ENSMUST00000136797 ENSMUSP00000119591 TRANSLATION protein_coding stop - 3 172.0 0.0 4.25 0.0 0.0 0.0 -4,-5 0.001 3 -2.0 MINOR ENSMUSG00000025173 Wdr45b ENSMUST00000137230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025173 Wdr45b ENSMUST00000106110 ENSMUSP00000101716 TRANSLATION protein_coding stop - 5 218.0 0.0 5.25 0.0 0.0 0.0 -4,-5 0.0056 4 -2.0 MINOR ENSMUSG00000025173 Wdr45b ENSMUST00000026173 ENSMUSP00000026173 TRANSLATION protein_coding - CCDS25773.1 1 344.0 0.0 9.0 28.9 0.0 0.0 -4,-5 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000034566 Atp5pd ENSMUST00000141474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034566 Atp5pd ENSMUST00000106537 ENSMUSP00000102147 TRANSLATION protein_coding - CCDS25633.1 5 161.0 0.0 5.0 30.2 219.2 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000034566 Atp5pd ENSMUST00000137563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034566 Atp5pd ENSMUST00000180072 ENSMUSP00000137071 TRANSLATION protein_coding - CCDS25633.1 2 161.0 0.0 5.0 30.2 219.2 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000034566 Atp5pd ENSMUST00000138779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034566 Atp5pd ENSMUST00000073791 ENSMUSP00000086072 TRANSLATION protein_coding - CCDS25633.1 5 161.0 0.0 5.0 30.2 219.2 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000034566 Atp5pd ENSMUST00000137754 ENSMUSP00000121240 TRANSLATION protein_coding stop - 3 138.0 0.0 4.25 0.0 189.2 0.0 -4,-7 0.0006 10 -2.0 MINOR ENSMUSG00000034566 Atp5pd ENSMUST00000043931 ENSMUSP00000046256 TRANSLATION protein_coding - CCDS25633.1 1 161.0 0.0 5.0 30.2 219.2 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000056648 Hoxb8 ENSMUST00000125410 ENSMUSP00000120351 TRANSLATION protein_coding stop - 5 191.0 0.0 1.0 0.0 44.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000056648 Hoxb8 ENSMUST00000052650 ENSMUSP00000052496 TRANSLATION protein_coding - CCDS25293.1 1 243.0 0.0 1.6 25.5 75.7 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025380 Fscn2 ENSMUST00000026445 ENSMUSP00000026445 TRANSLATION protein_coding - CCDS25731.1 1 492.0 0.0 5.0 35.8 371.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025380 Fscn2 ENSMUST00000152556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025380 Fscn2 ENSMUST00000130476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020477 Mrps24 ENSMUST00000020770 - NO_TRANSLATION retained_intron ENSMUSG00000020477 Mrps24 ENSMUST00000123697 - NO_TRANSLATION retained_intron ENSMUSG00000020477 Mrps24 ENSMUST00000154330 ENSMUSP00000119535 TRANSLATION protein_coding - CCDS24402.1 1 167.0 0.0 2.0 6.6 195.9 0.0 -4,0 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000020477 Mrps24 ENSMUST00000149980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020477 Mrps24 ENSMUST00000132874 - NO_TRANSLATION retained_intron ENSMUSG00000020945 Lyzl6 ENSMUST00000107014 ENSMUSP00000102628 TRANSLATION protein_coding - CCDS25519.1 1 148.0 2.0 3.5 11.0 134.2 0.0 1,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000020945 Lyzl6 ENSMUST00000021328 ENSMUSP00000021328 TRANSLATION protein_coding - CCDS25519.1 1 148.0 2.0 3.5 11.0 134.2 0.0 1,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000020945 Lyzl6 ENSMUST00000140430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018927 Ccl6 ENSMUST00000019071 ENSMUSP00000019071 TRANSLATION protein_coding - CCDS25171.1 1 116.0 0.0 2.0 0.4 58.7 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000018927 Ccl6 ENSMUST00000150243 - NO_TRANSLATION retained_intron ENSMUSG00000018927 Ccl6 ENSMUST00000138145 - NO_TRANSLATION retained_intron ENSMUSG00000000142 Axin2 ENSMUST00000144511 ENSMUSP00000119915 TRANSLATION protein_coding stop - 2 69.0 0.0 0.0 0.0 82.4 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000000142 Axin2 ENSMUST00000152909 ENSMUSP00000116956 TRANSLATION protein_coding stop - 3 103.0 0.0 1.0 0.0 88.9 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000000142 Axin2 ENSMUST00000140821 ENSMUSP00000120664 TRANSLATION protein_coding stop - 2 98.0 0.0 0.75 0.0 88.9 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000000142 Axin2 ENSMUST00000052915 ENSMUSP00000051331 TRANSLATION protein_coding - CCDS25575.1 1 840.0 0.0 3.4 4.9 317.5 0.0 -1,-4 1.0 - 10.0 PRINCIPAL:2 ENSMUSG00000000142 Axin2 ENSMUST00000144130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000142 Axin2 ENSMUST00000139682 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000142 Axin2 ENSMUST00000106711 ENSMUSP00000102322 TRANSLATION protein_coding - - 5 775.0 0.0 3.4 4.9 317.5 0.0 -1,-4 0.6815 - 10.0 ALTERNATIVE:1 ENSMUSG00000018395 Kif3a ENSMUST00000118353 ENSMUSP00000113848 TRANSLATION protein_coding - - 5 725.0 11.0 6.58 22.0 402.5 0.0 -4,-5 0.8088 16 17.208 ALTERNATIVE:1 ENSMUSG00000018395 Kif3a ENSMUST00000132496 ENSMUSP00000115161 TRANSLATION protein_coding stop - 5 178.0 10.0 2.88 0.0 159.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000018395 Kif3a ENSMUST00000120613 ENSMUSP00000112782 TRANSLATION protein_coding - CCDS48795.1 1 701.0 11.0 6.58 27.2 402.5 0.0 -4,-5 1.0 16 18.0 PRINCIPAL:4 ENSMUSG00000018395 Kif3a ENSMUST00000057330 ENSMUSP00000056197 TRANSLATION protein_coding - CCDS70185.1 1 698.0 11.0 6.58 27.2 402.5 0.0 -4,-5 0.9846 16 18.0 ALTERNATIVE:1 ENSMUSG00000018395 Kif3a ENSMUST00000132653 ENSMUSP00000120388 TRANSLATION nonsense_mediated_decay start - 5 25.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018395 Kif3a ENSMUST00000130037 ENSMUSP00000116509 TRANSLATION protein_coding start - 3 185.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000018395 Kif3a ENSMUST00000140359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018395 Kif3a ENSMUST00000173744 ENSMUSP00000133432 TRANSLATION protein_coding - CCDS78947.1 1 694.0 11.0 6.58 14.2 402.5 0.0 -4,-5 0.9053 16 16.016 MINOR ENSMUSG00000020604 Arsg ENSMUST00000136336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020604 Arsg ENSMUST00000106696 ENSMUSP00000102307 TRANSLATION protein_coding - CCDS48971.1 1 202.0 2.0 2.68 0.0 122.0 0.0 -4,-7 0.0015 4 0.666 MINOR ENSMUSG00000020604 Arsg ENSMUST00000106697 ENSMUSP00000102308 TRANSLATION protein_coding - CCDS25581.1 5 525.0 10.0 6.58 9.4 314.4 0.0 1,-3 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000020604 Arsg ENSMUST00000020928 ENSMUSP00000020928 TRANSLATION protein_coding - CCDS25581.1 1 525.0 10.0 6.58 9.4 314.4 0.0 1,-3 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000020604 Arsg ENSMUST00000152252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020305 Asb3 ENSMUST00000148163 - NO_TRANSLATION retained_intron ENSMUSG00000020305 Asb3 ENSMUST00000148808 - NO_TRANSLATION retained_intron ENSMUSG00000020305 Asb3 ENSMUST00000020551 ENSMUSP00000020551 TRANSLATION protein_coding - CCDS24511.1 1 525.0 0.0 9.75 7.9 206.4 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000020305 Asb3 ENSMUST00000137306 ENSMUSP00000114692 TRANSLATION nonsense_mediated_decay - - 5 124.0 0.0 1.35 0.0 31.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020305 Asb3 ENSMUST00000203878 ENSMUSP00000144900 TRANSLATION protein_coding - - 5 564.0 0.0 9.75 0.0 206.4 0.0 -4,0 0.1073 3 12.0 MINOR ENSMUSG00000020305 Asb3 ENSMUST00000117883 ENSMUSP00000113072 TRANSLATION protein_coding - - 1 463.0 0.0 8.75 1.2 160.7 0.0 -4,-5 0.0584 2 7.318 MINOR ENSMUSG00000046879 Irgm1 ENSMUST00000097271 ENSMUSP00000094870 TRANSLATION protein_coding - - 1 393.0 15.0 1.0 1.0 551.5 0.0 -4,-7 0.823 13 14.0 PRINCIPAL:2 ENSMUSG00000046879 Irgm1 ENSMUST00000049519 ENSMUSP00000050446 TRANSLATION protein_coding - CCDS24588.1 1 409.0 15.0 1.0 0.4 551.5 0.0 -4,-5 0.3942 13 14.0 ALTERNATIVE:2 ENSMUSG00000046879 Irgm1 ENSMUST00000147151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057897 Camk2b ENSMUST00000130427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057897 Camk2b ENSMUST00000129098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057897 Camk2b ENSMUST00000090443 ENSMUSP00000087925 TRANSLATION protein_coding - CCDS48748.1 1 545.0 21.0 13.61 0.0 447.3 1.0 -4,-5 0.0839 11 13.202 MINOR ENSMUSG00000057897 Camk2b ENSMUST00000002817 ENSMUSP00000002817 TRANSLATION protein_coding - - 5 503.0 21.0 13.61 19.8 447.3 1.0 -4,-5 0.8792 8 16.486 MINOR ENSMUSG00000057897 Camk2b ENSMUST00000109812 ENSMUSP00000105437 TRANSLATION protein_coding - CCDS48749.1 1 529.0 21.0 13.53 0.0 429.6 0.0 -4,-5 0.1088 9 13.04 MINOR ENSMUSG00000057897 Camk2b ENSMUST00000155755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057897 Camk2b ENSMUST00000019133 ENSMUSP00000019133 TRANSLATION protein_coding - - 5 666.0 21.0 14.01 3.1 447.3 1.0 -4,-5 0.2446 17 14.368 MINOR ENSMUSG00000057897 Camk2b ENSMUST00000066431 ENSMUSP00000065101 TRANSLATION protein_coding - - 5 479.0 21.0 13.25 15.6 447.3 1.0 -4,-5 0.7812 8 15.034 MINOR ENSMUSG00000057897 Camk2b ENSMUST00000093355 ENSMUSP00000091046 TRANSLATION protein_coding - - 5 589.0 21.0 13.61 1.1 447.3 1.0 -4,-5 0.1588 13 13.218 MINOR ENSMUSG00000057897 Camk2b ENSMUST00000101585 ENSMUSP00000099119 TRANSLATION protein_coding - - 5 518.0 21.0 13.65 11.0 447.3 1.0 -4,-5 0.7674 9 15.028 MINOR ENSMUSG00000057897 Camk2b ENSMUST00000109813 ENSMUSP00000105438 TRANSLATION protein_coding - CCDS24411.1 1 542.0 21.0 14.01 17.9 447.3 1.0 -4,-5 1.0 10 16.952 PRINCIPAL:3 ENSMUSG00000057897 Camk2b ENSMUST00000101586 ENSMUSP00000099120 TRANSLATION protein_coding - - 5 518.0 21.0 13.86 23.9 447.3 1.0 -4,-5 0.936 9 17.7 ALTERNATIVE:1 ENSMUSG00000057897 Camk2b ENSMUST00000123391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057897 Camk2b ENSMUST00000154197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038994 H1f9 ENSMUST00000038928 ENSMUSP00000039866 TRANSLATION protein_coding - CCDS25267.1 - 170.0 0.0 0.6 0.0 35.2 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000039055 Eme1 ENSMUST00000039949 ENSMUSP00000036361 TRANSLATION protein_coding - CCDS25262.1 1 570.0 0.0 4.15 0.4 65.9 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000039055 Eme1 ENSMUST00000128643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039055 Eme1 ENSMUST00000128447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039055 Eme1 ENSMUST00000127158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020134 Peli1 ENSMUST00000093290 ENSMUSP00000090979 TRANSLATION protein_coding - CCDS24462.1 1 418.0 6.0 2.7 36.9 742.4 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000020134 Peli1 ENSMUST00000156122 - NO_TRANSLATION retained_intron ENSMUSG00000020134 Peli1 ENSMUST00000149675 - NO_TRANSLATION retained_intron ENSMUSG00000020134 Peli1 ENSMUST00000101477 ENSMUSP00000099018 TRANSLATION protein_coding - CCDS24462.1 1 418.0 6.0 2.7 36.9 742.4 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000020898 Ctc1 ENSMUST00000152979 ENSMUSP00000125028 TRANSLATION nonsense_mediated_decay - - 1 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020898 Ctc1 ENSMUST00000123871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020898 Ctc1 ENSMUST00000161271 - NO_TRANSLATION retained_intron ENSMUSG00000020898 Ctc1 ENSMUST00000161455 ENSMUSP00000124702 TRANSLATION protein_coding - CCDS70214.1 2 965.0 0.0 12.05 0.0 1657.0 0.0 -4,-6 0.3318 12 6.0 MINOR ENSMUSG00000020898 Ctc1 ENSMUST00000161384 - NO_TRANSLATION retained_intron ENSMUSG00000020898 Ctc1 ENSMUST00000021278 ENSMUSP00000021278 TRANSLATION protein_coding - CCDS48824.1 1 1211.0 0.0 11.46 1.3 2016.5 0.0 -4,-5 0.9237 12 7.818 ALTERNATIVE:2 ENSMUSG00000020898 Ctc1 ENSMUST00000146621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020898 Ctc1 ENSMUST00000143404 - NO_TRANSLATION retained_intron ENSMUSG00000020898 Ctc1 ENSMUST00000154126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020898 Ctc1 ENSMUST00000135611 - NO_TRANSLATION retained_intron ENSMUSG00000020898 Ctc1 ENSMUST00000162256 - NO_TRANSLATION retained_intron ENSMUSG00000020898 Ctc1 ENSMUST00000116359 ENSMUSP00000112063 TRANSLATION protein_coding - CCDS36189.2 1 1212.0 0.0 11.46 1.3 2018.9 0.0 -4,-5 1.0 12 7.818 PRINCIPAL:4 ENSMUSG00000053654 Krt42 ENSMUST00000017270 ENSMUSP00000017270 TRANSLATION protein_coding - CCDS25416.1 1 452.0 0.0 4.45 7.1 412.1 0.0 -4,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000053654 Krt42 ENSMUST00000107406 - NO_TRANSLATION retained_intron ENSMUSG00000020818 Mfsd11 ENSMUST00000139954 ENSMUSP00000118112 TRANSLATION nonsense_mediated_decay - - 5 114.0 0.0 1.25 0.0 82.5 6.0 -2,-5 0.0021 - -2.0 MINOR ENSMUSG00000020818 Mfsd11 ENSMUST00000126661 - NO_TRANSLATION retained_intron ENSMUSG00000020818 Mfsd11 ENSMUST00000021173 ENSMUSP00000021173 TRANSLATION protein_coding - CCDS25681.1 1 449.0 0.0 5.3275 22.2 184.1 20.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020818 Mfsd11 ENSMUST00000125920 - NO_TRANSLATION retained_intron ENSMUSG00000020818 Mfsd11 ENSMUST00000147404 - NO_TRANSLATION retained_intron ENSMUSG00000020818 Mfsd11 ENSMUST00000153084 ENSMUSP00000123368 TRANSLATION protein_coding - - 5 397.0 0.0 4.51 1.0 106.5 18.0 -2,-5 0.0124 - 5.712 MINOR ENSMUSG00000020818 Mfsd11 ENSMUST00000151944 - NO_TRANSLATION retained_intron ENSMUSG00000020818 Mfsd11 ENSMUST00000106365 ENSMUSP00000101973 TRANSLATION nonsense_mediated_decay - - 1 114.0 0.0 1.25 0.0 82.5 6.0 -2,-5 0.0021 - -2.0 MINOR ENSMUSG00000020818 Mfsd11 ENSMUST00000134106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020818 Mfsd11 ENSMUST00000135135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020818 Mfsd11 ENSMUST00000136012 ENSMUSP00000118203 TRANSLATION nonsense_mediated_decay - - 2 114.0 0.0 1.25 0.0 82.5 6.0 -2,-5 0.0021 - -2.0 MINOR ENSMUSG00000020818 Mfsd11 ENSMUST00000106363 ENSMUSP00000101971 TRANSLATION nonsense_mediated_decay - - 1 110.0 0.0 1.25 0.0 82.3 6.0 -2,-5 0.0021 - -2.0 MINOR ENSMUSG00000005204 Senp3 ENSMUST00000066760 ENSMUSP00000066581 TRANSLATION protein_coding - CCDS24905.1 1 568.0 5.0 7.25 10.6 157.8 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000005204 Senp3 ENSMUST00000153516 - NO_TRANSLATION retained_intron ENSMUSG00000005204 Senp3 ENSMUST00000130440 - NO_TRANSLATION retained_intron ENSMUSG00000005204 Senp3 ENSMUST00000135372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005204 Senp3 ENSMUST00000123084 - NO_TRANSLATION retained_intron ENSMUSG00000005204 Senp3 ENSMUST00000005336 ENSMUSP00000005336 TRANSLATION protein_coding - CCDS24905.1 1 568.0 5.0 7.25 10.6 157.8 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000005204 Senp3 ENSMUST00000134942 ENSMUSP00000114791 TRANSLATION protein_coding start - 3 169.0 4.0 4.5 0.0 118.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000005204 Senp3 ENSMUST00000142206 - NO_TRANSLATION retained_intron ENSMUSG00000005204 Senp3 ENSMUST00000128355 - NO_TRANSLATION retained_intron ENSMUSG00000080152 H3f4 ENSMUST00000122447 ENSMUSP00001091671 TRANSLATION protein_coding - - - 136.0 0.0 1.0 20.5 181.5 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000069919 Hba-a1 ENSMUST00000093209 ENSMUSP00000090897 TRANSLATION protein_coding - CCDS24523.1 1 142.0 32.0 3.0 33.9 99.8 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000069919 Hba-a1 ENSMUST00000142555 - NO_TRANSLATION retained_intron ENSMUSG00000019173 Rab5c ENSMUST00000107364 ENSMUSP00000102987 TRANSLATION protein_coding - CCDS36333.1 1 216.0 23.0 5.65 36.9 209.8 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000019173 Rab5c ENSMUST00000019317 ENSMUSP00000019317 TRANSLATION protein_coding - CCDS79048.1 1 234.0 23.0 5.4 0.0 190.8 0.0 -4,-7 0.0429 5 16.362 MINOR ENSMUSG00000019173 Rab5c ENSMUST00000155500 ENSMUSP00000117656 TRANSLATION protein_coding stop - 3 34.0 5.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019173 Rab5c ENSMUST00000155843 ENSMUSP00000123581 TRANSLATION protein_coding stop - 3 83.0 16.0 2.5 0.0 83.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000069873 4930438A08Rik ENSMUST00000108834 ENSMUSP00000104462 TRANSLATION protein_coding - - 5 536.0 35.0 7.08 0.4 244.2 0.0 2,-3 0.88 1 18.0 PRINCIPAL:1 ENSMUSG00000069873 4930438A08Rik ENSMUST00000208022 ENSMUSP00000147249 TRANSLATION protein_coding - - 5 305.0 17.0 4.75 0.0 91.4 0.0 2,-3 0.0042 - 1.338 MINOR ENSMUSG00000018554 Ybx2 ENSMUST00000149194 ENSMUSP00000136684 TRANSLATION protein_coding - - 5 164.0 0.0 0.0 0.7 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000018554 Ybx2 ENSMUST00000108601 ENSMUSP00000104242 TRANSLATION protein_coding - CCDS83830.1 1 282.0 0.0 3.28 0.0 90.4 0.0 -4,0 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000018554 Ybx2 ENSMUST00000148395 - NO_TRANSLATION retained_intron ENSMUSG00000018554 Ybx2 ENSMUST00000018698 ENSMUSP00000018698 TRANSLATION protein_coding - CCDS36200.1 1 359.0 0.0 3.08 0.4 90.4 0.0 -3,-5 0.1437 6 7.598 ALTERNATIVE:2 ENSMUSG00000018554 Ybx2 ENSMUST00000130377 - NO_TRANSLATION retained_intron ENSMUSG00000075610 Tmem92 ENSMUST00000100554 ENSMUSP00000128300 TRANSLATION protein_coding - CCDS36285.1 1 114.0 0.0 0.0 0.0 0.0 2.0 1,-3 0.0952 - 0.0 MINOR ENSMUSG00000075610 Tmem92 ENSMUST00000143620 ENSMUSP00000129874 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0075 - -2.0 MINOR ENSMUSG00000075610 Tmem92 ENSMUST00000162809 ENSMUSP00000125159 TRANSLATION protein_coding - CCDS48890.1 1 162.0 0.0 0.0 0.0 28.9 1.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046491 C1qtnf2 ENSMUST00000057679 ENSMUSP00000051652 TRANSLATION protein_coding - CCDS24558.1 1 294.0 0.0 1.0 0.4 172.3 0.0 4,-1 0.5836 1 8.0 ALTERNATIVE:2 ENSMUSG00000046491 C1qtnf2 ENSMUST00000151912 ENSMUSP00000133616 TRANSLATION protein_coding stop - 1 137.0 0.0 1.0 0.0 37.7 0.0 4,-1 0.0819 - -2.0 MINOR ENSMUSG00000046491 C1qtnf2 ENSMUST00000173002 ENSMUSP00000134705 TRANSLATION protein_coding - - 5 324.0 0.0 1.0 0.0 172.3 0.0 -2,0 0.8232 1 8.0 PRINCIPAL:4 ENSMUSG00000034708 Grn ENSMUST00000135517 - NO_TRANSLATION retained_intron ENSMUSG00000034708 Grn ENSMUST00000125819 ENSMUSP00000134948 TRANSLATION protein_coding start - 3 247.0 0.0 2.55 0.0 135.0 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000034708 Grn ENSMUST00000177428 ENSMUSP00000134893 TRANSLATION protein_coding start - 3 335.0 0.0 2.4 0.0 113.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000034708 Grn ENSMUST00000148580 - NO_TRANSLATION retained_intron ENSMUSG00000034708 Grn ENSMUST00000239431 ENSMUSP00000159379 TRANSLATION protein_coding - - - 589.0 0.0 6.3 8.2 384.8 0.0 3,-2 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000034708 Grn ENSMUST00000138451 - NO_TRANSLATION retained_intron ENSMUSG00000034708 Grn ENSMUST00000049460 ENSMUSP00000046340 TRANSLATION protein_coding - CCDS48943.1 1 602.0 0.0 6.3 0.0 384.8 0.0 0,-3 0.3753 21 12.0 MINOR ENSMUSG00000034708 Grn ENSMUST00000176953 - NO_TRANSLATION retained_intron ENSMUSG00000034708 Grn ENSMUST00000123500 - NO_TRANSLATION retained_intron ENSMUSG00000034708 Grn ENSMUST00000129997 ENSMUSP00000135739 TRANSLATION protein_coding stop - 5 214.0 0.0 1.5 0.0 102.1 0.0 3,-2 0.0 4 -2.0 MINOR ENSMUSG00000034708 Grn ENSMUST00000127530 - NO_TRANSLATION retained_intron ENSMUSG00000017291 Taok1 ENSMUST00000058496 ENSMUSP00000055470 TRANSLATION protein_coding - CCDS36235.1 1 1001.0 23.0 15.2 22.2 218.9 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000017291 Taok1 ENSMUST00000017435 ENSMUSP00000017435 TRANSLATION protein_coding - CCDS36235.1 1 1001.0 23.0 15.2 22.2 218.9 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000049604 Hoxb13 ENSMUST00000062709 ENSMUSP00000056315 TRANSLATION protein_coding - CCDS25291.1 1 286.0 0.0 1.0 11.4 159.7 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000060335 Or1e25 ENSMUST00000072993 ENSMUSP00000072758 TRANSLATION protein_coding - CCDS25014.1 - 312.0 0.0 1.0 11.5 203.4 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060335 Or1e25 ENSMUST00000214228 ENSMUSP00000148997 TRANSLATION protein_coding - CCDS25014.1 5 312.0 0.0 1.0 11.5 203.4 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004394 Tmed4 ENSMUST00000130621 - NO_TRANSLATION retained_intron ENSMUSG00000004394 Tmed4 ENSMUST00000004508 ENSMUSP00000004508 TRANSLATION protein_coding - CCDS24415.1 1 227.0 0.0 3.88 5.9 178.2 2.0 1,-2 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000004394 Tmed4 ENSMUST00000132147 ENSMUSP00000121643 TRANSLATION protein_coding stop - 5 170.0 0.0 2.88 0.0 86.3 1.0 1,-2 0.0031 6 -2.0 MINOR ENSMUSG00000089753 Cd300ld2 ENSMUST00000106578 ENSMUSP00000102188 TRANSLATION protein_coding - - 5 305.0 0.0 1.0 0.0 52.5 0.0 4,-1 0.8424 - 12.0 PRINCIPAL:1 ENSMUSG00000050965 Prkca ENSMUST00000134910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050965 Prkca ENSMUST00000059595 ENSMUSP00000062392 TRANSLATION protein_coding - CCDS25573.1 1 672.0 32.0 13.3 28.5 460.5 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000050965 Prkca ENSMUST00000100302 ENSMUSP00000097875 TRANSLATION protein_coding - - 1 248.0 6.0 5.6 0.0 169.6 0.0 -4,-2 0.0 2 0.0 MINOR ENSMUSG00000050965 Prkca ENSMUST00000134725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046095 Krt32 ENSMUST00000107419 ENSMUSP00000103042 TRANSLATION protein_coding - CCDS56805.1 1 453.0 0.0 3.866 3.8 349.4 0.0 -4,-1 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000046095 Krt32 ENSMUST00000139873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001034 Mapk7 ENSMUST00000126495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001034 Mapk7 ENSMUST00000139932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001034 Mapk7 ENSMUST00000153441 ENSMUSP00000116084 TRANSLATION protein_coding start/stop - 3 203.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000001034 Mapk7 ENSMUST00000101085 ENSMUSP00000098646 TRANSLATION protein_coding - CCDS78963.1 1 703.0 12.0 2.565 0.0 197.8 0.0 -4,-6 0.0232 8 11.832 MINOR ENSMUSG00000001034 Mapk7 ENSMUST00000128478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001034 Mapk7 ENSMUST00000140779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001034 Mapk7 ENSMUST00000135521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001034 Mapk7 ENSMUST00000123360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001034 Mapk7 ENSMUST00000152755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001034 Mapk7 ENSMUST00000108714 ENSMUSP00000104354 TRANSLATION protein_coding - CCDS70205.1 1 737.0 12.0 2.4 0.3 198.1 0.0 -4,-2 0.0717 10 11.52 MINOR ENSMUSG00000001034 Mapk7 ENSMUST00000079080 ENSMUSP00000078087 TRANSLATION protein_coding - CCDS24814.1 1 806.0 17.0 3.2 2.1 223.8 0.0 -4,-5 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000001034 Mapk7 ENSMUST00000129272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001034 Mapk7 ENSMUST00000125840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001034 Mapk7 ENSMUST00000139663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034427 Myo15b ENSMUST00000151507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034427 Myo15b ENSMUST00000167507 ENSMUSP00000129226 TRANSLATION protein_coding start - 5 511.0 0.0 5.405 0.0 135.7 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000034427 Myo15b ENSMUST00000093911 ENSMUSP00000091439 TRANSLATION protein_coding - - 5 3033.0 15.0 23.945 0.0 762.3 0.0 -4,-2 1.0 29 18.0 PRINCIPAL:1 ENSMUSG00000034427 Myo15b ENSMUST00000132447 - NO_TRANSLATION retained_intron ENSMUSG00000034427 Myo15b ENSMUST00000040703 ENSMUSP00000048072 TRANSLATION protein_coding start - 1 868.0 0.0 3.3625 0.0 39.5 0.0 -4,-5 0.0065 16 -2.0 MINOR ENSMUSG00000034427 Myo15b ENSMUST00000222123 ENSMUSP00000152405 TRANSLATION protein_coding - - 5 1611.0 0.0 10.57 0.0 252.2 0.0 -4,-5 0.045 29 0.0 MINOR ENSMUSG00000034427 Myo15b ENSMUST00000125835 ENSMUSP00000144423 TRANSLATION protein_coding start - 3 165.0 0.0 2.7 0.0 39.5 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000034427 Myo15b ENSMUST00000141947 - NO_TRANSLATION retained_intron ENSMUSG00000017146 Brca1 ENSMUST00000142086 ENSMUSP00000139813 TRANSLATION nonsense_mediated_decay - - 1 75.0 9.0 2.0 0.0 42.7 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000017146 Brca1 ENSMUST00000017290 ENSMUSP00000017290 TRANSLATION protein_coding - CCDS25474.1 1 1812.0 9.0 9.025 0.0 329.6 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000017146 Brca1 ENSMUST00000191198 ENSMUSP00000139737 TRANSLATION protein_coding start/stop - 3 177.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017146 Brca1 ENSMUST00000188168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017146 Brca1 ENSMUST00000131460 - NO_TRANSLATION retained_intron ENSMUSG00000017146 Brca1 ENSMUST00000190862 ENSMUSP00000139599 TRANSLATION protein_coding stop - 5 79.0 2.0 2.125 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000017146 Brca1 ENSMUST00000156843 - NO_TRANSLATION retained_intron ENSMUSG00000069893 9930111J21Rik1 ENSMUST00000093153 ENSMUSP00000090840 TRANSLATION protein_coding - - 1 467.0 15.0 1.44 0.0 413.6 0.0 -4,-5 0.0 - 3.858 MINOR ENSMUSG00000069893 9930111J21Rik1 ENSMUST00000097494 ENSMUSP00000095102 TRANSLATION protein_coding - CCDS48780.1 5 844.0 28.0 2.24 0.4 917.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000069893 9930111J21Rik1 ENSMUST00000141200 ENSMUSP00000121432 TRANSLATION protein_coding stop - 1 125.0 8.0 0.8 0.0 99.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045287 Rtn4rl1 ENSMUST00000102514 ENSMUSP00000099572 TRANSLATION protein_coding - CCDS25043.1 1 445.0 0.0 1.0 10.6 122.8 0.0 3,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000062825 Actg1 ENSMUST00000089616 ENSMUSP00000087043 TRANSLATION protein_coding start - 5 105.0 10.0 2.5 0.0 91.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062825 Actg1 ENSMUST00000141406 - NO_TRANSLATION retained_intron ENSMUSG00000062825 Actg1 ENSMUST00000156343 - NO_TRANSLATION retained_intron ENSMUSG00000062825 Actg1 ENSMUST00000131103 ENSMUSP00000134070 TRANSLATION nonsense_mediated_decay - - 5 132.0 7.0 2.0 0.0 147.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062825 Actg1 ENSMUST00000128055 ENSMUSP00000134296 TRANSLATION protein_coding stop - 2 268.0 18.0 3.0 0.0 264.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000062825 Actg1 ENSMUST00000106215 ENSMUSP00000101822 TRANSLATION protein_coding - CCDS25730.1 1 375.0 35.0 7.25 35.8 504.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000062825 Actg1 ENSMUST00000071555 ENSMUSP00000071486 TRANSLATION protein_coding - CCDS25730.1 1 375.0 35.0 7.25 35.8 504.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000062825 Actg1 ENSMUST00000144868 - NO_TRANSLATION retained_intron ENSMUSG00000062825 Actg1 ENSMUST00000062147 ENSMUSP00000101821 TRANSLATION protein_coding - - 3 153.0 22.0 3.5 0.0 208.9 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000051455 Meioc ENSMUST00000100378 ENSMUSP00000097947 TRANSLATION protein_coding - CCDS48945.1 5 965.0 0.0 1.25 2.2 284.4 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000051455 Meioc ENSMUST00000156590 ENSMUSP00000116246 TRANSLATION protein_coding stop - 1 527.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0037 1 -2.0 MINOR ENSMUSG00000051455 Meioc ENSMUST00000155813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020696 Rffl ENSMUST00000126660 ENSMUSP00000115846 TRANSLATION protein_coding stop - 2 142.0 8.0 0.9 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000020696 Rffl ENSMUST00000108173 ENSMUSP00000103808 TRANSLATION protein_coding - CCDS25148.1 1 363.0 16.0 2.1 12.2 46.9 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000020696 Rffl ENSMUST00000093975 ENSMUSP00000091510 TRANSLATION protein_coding - CCDS48867.1 1 377.0 16.0 2.1 0.0 46.9 0.0 -4,-7 0.1418 3 18.0 MINOR ENSMUSG00000020696 Rffl ENSMUST00000074515 ENSMUSP00000074108 TRANSLATION protein_coding - CCDS25148.1 5 363.0 16.0 2.1 12.2 46.9 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000020696 Rffl ENSMUST00000021036 ENSMUSP00000021036 TRANSLATION protein_coding - CCDS25149.1 1 335.0 16.0 2.1 4.9 46.9 0.0 -4,-5 0.4792 3 19.044 MINOR ENSMUSG00000020696 Rffl ENSMUST00000103218 ENSMUSP00000099507 TRANSLATION protein_coding - - 1 293.0 8.0 1.5 0.0 0.0 0.0 -4,-5 0.0 2 4.95 MINOR ENSMUSG00000020696 Rffl ENSMUST00000071152 ENSMUSP00000071150 TRANSLATION protein_coding - CCDS48868.1 1 398.0 16.0 2.1 3.3 46.9 0.0 -4,-7 0.3147 3 18.615 MINOR ENSMUSG00000020405 Fabp6 ENSMUST00000020672 ENSMUSP00000020672 TRANSLATION protein_coding - CCDS24560.1 1 128.0 0.0 3.25 34.6 267.0 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020811 Wscd1 ENSMUST00000150531 ENSMUSP00000123659 TRANSLATION protein_coding stop - 2 88.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000020811 Wscd1 ENSMUST00000132095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020811 Wscd1 ENSMUST00000021168 ENSMUSP00000021168 TRANSLATION protein_coding - CCDS24975.1 1 572.0 16.0 1.06 10.3 138.0 0.0 -3,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000020811 Wscd1 ENSMUST00000108510 ENSMUSP00000104150 TRANSLATION protein_coding - CCDS24975.1 5 572.0 16.0 1.06 10.3 138.0 0.0 -3,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000020811 Wscd1 ENSMUST00000138339 - NO_TRANSLATION retained_intron ENSMUSG00000020811 Wscd1 ENSMUST00000108511 ENSMUSP00000104151 TRANSLATION protein_coding - CCDS24975.1 5 572.0 16.0 1.06 10.3 138.0 0.0 -3,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000053838 Nudcd3 ENSMUST00000109805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053838 Nudcd3 ENSMUST00000135631 ENSMUSP00000123108 TRANSLATION protein_coding start - 3 251.0 0.0 1.6 0.0 0.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000053838 Nudcd3 ENSMUST00000140700 - NO_TRANSLATION retained_intron ENSMUSG00000053838 Nudcd3 ENSMUST00000066496 ENSMUSP00000064668 TRANSLATION protein_coding - CCDS24412.1 1 363.0 0.0 2.6 7.8 136.1 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000020380 Rad50 ENSMUST00000128483 ENSMUSP00000120869 TRANSLATION nonsense_mediated_decay - - 1 551.0 14.0 3.27 0.0 119.6 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000020380 Rad50 ENSMUST00000152598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020380 Rad50 ENSMUST00000124352 ENSMUSP00000119618 TRANSLATION protein_coding stop - 1 657.0 14.0 6.1 0.0 167.8 0.0 -4,-5 0.0168 11 -2.0 MINOR ENSMUSG00000020380 Rad50 ENSMUST00000020649 ENSMUSP00000020649 TRANSLATION protein_coding - CCDS24684.1 1 1312.0 14.0 11.4 36.2 167.8 0.0 -4,-5 1.0 27 22.0 PRINCIPAL:1 ENSMUSG00000020380 Rad50 ENSMUST00000126121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045109 Krtap4-7 ENSMUST00000055121 ENSMUSP00000053711 TRANSLATION protein_coding - CCDS25393.1 - 168.0 0.0 0.0 2.0 41.6 0.0 -4,-5 0.9582 - 7.0 PRINCIPAL:1 ENSMUSG00000020400 Tnip1 ENSMUST00000108886 ENSMUSP00000104514 TRANSLATION protein_coding - CCDS56769.1 1 594.0 0.0 4.2 0.3 0.0 0.0 -4,-5 0.2955 12 6.0 ALTERNATIVE:2 ENSMUSG00000020400 Tnip1 ENSMUST00000151736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020400 Tnip1 ENSMUST00000124304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020400 Tnip1 ENSMUST00000018482 ENSMUSP00000018482 TRANSLATION protein_coding - CCDS24704.1 1 647.0 0.0 4.2 0.4 0.0 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:4 ENSMUSG00000020400 Tnip1 ENSMUST00000155316 ENSMUSP00000116721 TRANSLATION protein_coding stop - 5 214.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0349 1 -2.0 MINOR ENSMUSG00000020400 Tnip1 ENSMUST00000102731 ENSMUSP00000099792 TRANSLATION protein_coding - CCDS24704.1 5 647.0 0.0 4.2 0.4 0.0 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:4 ENSMUSG00000020400 Tnip1 ENSMUST00000132224 - NO_TRANSLATION retained_intron ENSMUSG00000020400 Tnip1 ENSMUST00000102730 ENSMUSP00000099791 TRANSLATION protein_coding - CCDS70188.1 1 646.0 0.0 4.2 0.4 0.0 0.0 -4,-5 0.9293 12 6.0 ALTERNATIVE:2 ENSMUSG00000020400 Tnip1 ENSMUST00000126703 ENSMUSP00000122836 TRANSLATION protein_coding stop - 5 272.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0239 7 -2.0 MINOR ENSMUSG00000020400 Tnip1 ENSMUST00000108889 ENSMUSP00000104517 TRANSLATION protein_coding - CCDS24704.1 1 647.0 0.0 4.2 0.4 0.0 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:4 ENSMUSG00000020400 Tnip1 ENSMUST00000132776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020400 Tnip1 ENSMUST00000108885 ENSMUSP00000104513 TRANSLATION protein_coding - CCDS56769.1 1 594.0 0.0 4.2 0.3 0.0 0.0 -4,-5 0.2955 12 6.0 ALTERNATIVE:2 ENSMUSG00000075595 Zfp652 ENSMUST00000107717 ENSMUSP00000103345 TRANSLATION protein_coding - CCDS36287.1 5 608.0 32.0 2.86 10.8 138.8 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000075595 Zfp652 ENSMUST00000148945 ENSMUSP00000115393 TRANSLATION nonsense_mediated_decay - - 5 428.0 26.0 2.76 1.1 100.6 0.0 -4,-5 0.0984 3 -2.0 MINOR ENSMUSG00000075595 Zfp652 ENSMUST00000091565 ENSMUSP00000089153 TRANSLATION protein_coding - CCDS36287.1 1 608.0 32.0 2.86 10.8 138.8 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000075595 Zfp652 ENSMUST00000133070 ENSMUSP00000122280 TRANSLATION nonsense_mediated_decay - - 2 451.0 25.0 2.79 0.0 97.2 0.0 -4,-5 0.0174 3 -2.0 MINOR ENSMUSG00000036644 Tbc1d9b ENSMUST00000148887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036644 Tbc1d9b ENSMUST00000137852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036644 Tbc1d9b ENSMUST00000126758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036644 Tbc1d9b ENSMUST00000093138 ENSMUSP00000090825 TRANSLATION protein_coding - CCDS36146.1 1 1246.0 4.0 4.97 2.5 306.5 0.0 -4,-7 1.0 19 13.0 PRINCIPAL:2 ENSMUSG00000036644 Tbc1d9b ENSMUST00000147628 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036644 Tbc1d9b ENSMUST00000101270 ENSMUSP00000098828 TRANSLATION protein_coding - CCDS70175.1 5 1263.0 4.0 4.97 1.3 306.5 0.0 -4,-7 0.6718 19 12.2 ALTERNATIVE:2 ENSMUSG00000036644 Tbc1d9b ENSMUST00000141520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036644 Tbc1d9b ENSMUST00000124605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069823 Or1e16 ENSMUST00000131253 ENSMUSP00000120899 TRANSLATION protein_coding stop - 3 196.0 0.0 1.0 0.0 115.3 4.0 -3,-5 0.0044 - -2.0 MINOR ENSMUSG00000069823 Or1e16 ENSMUST00000120303 ENSMUSP00000113707 TRANSLATION protein_coding - CCDS25008.1 1 314.0 0.0 2.0 8.9 198.2 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020372 Rack1 ENSMUST00000125166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020372 Rack1 ENSMUST00000139959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020372 Rack1 ENSMUST00000142269 - NO_TRANSLATION retained_intron ENSMUSG00000020372 Rack1 ENSMUST00000136703 - NO_TRANSLATION retained_intron ENSMUSG00000020372 Rack1 ENSMUST00000136849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020372 Rack1 ENSMUST00000020640 ENSMUSP00000020640 TRANSLATION protein_coding - CCDS24585.1 1 317.0 0.0 7.75 33.7 179.7 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000038020 Rapgefl1 ENSMUST00000037640 - NO_TRANSLATION retained_intron ENSMUSG00000038020 Rapgefl1 ENSMUST00000139889 - NO_TRANSLATION retained_intron ENSMUSG00000038020 Rapgefl1 ENSMUST00000107479 ENSMUSP00000103103 TRANSLATION protein_coding - CCDS36303.1 5 662.0 0.0 8.89 11.1 155.1 0.0 -4,-7 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000018428 Akap1 ENSMUST00000153961 - NO_TRANSLATION retained_intron ENSMUSG00000018428 Akap1 ENSMUST00000018572 ENSMUSP00000018572 TRANSLATION protein_coding - CCDS25229.1 1 857.0 0.0 2.65 0.4 139.4 2.0 -3,-6 1.0 21 8.0 PRINCIPAL:2 ENSMUSG00000018428 Akap1 ENSMUST00000107904 ENSMUSP00000103537 TRANSLATION protein_coding - - 5 890.0 0.0 2.65 0.0 139.4 2.0 -4,-2 0.1932 21 8.0 ALTERNATIVE:2 ENSMUSG00000018428 Akap1 ENSMUST00000153787 ENSMUSP00000123018 TRANSLATION nonsense_mediated_decay start - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018428 Akap1 ENSMUST00000107903 ENSMUSP00000103536 TRANSLATION protein_coding - CCDS25229.1 1 857.0 0.0 2.65 0.4 139.4 2.0 -3,-6 1.0 21 8.0 PRINCIPAL:2 ENSMUSG00000018428 Akap1 ENSMUST00000143720 ENSMUSP00000122295 TRANSLATION nonsense_mediated_decay - - 1 547.0 0.0 0.0 0.1 19.1 2.0 -3,-6 0.0063 18 -2.0 MINOR ENSMUSG00000034652 Cd300a ENSMUST00000153245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034652 Cd300a ENSMUST00000045151 ENSMUSP00000036773 TRANSLATION protein_coding - CCDS83923.1 1 314.0 0.0 1.0 0.0 74.3 1.0 3,-2 0.713 4 6.0 ALTERNATIVE:2 ENSMUSG00000034652 Cd300a ENSMUST00000106582 ENSMUSP00000102192 TRANSLATION protein_coding - CCDS25613.1 1 318.0 0.0 1.0 0.1 74.1 1.0 3,-2 1.0 4 6.0 PRINCIPAL:2 ENSMUSG00000051355 Commd1 ENSMUST00000057843 ENSMUSP00000053606 TRANSLATION protein_coding - - 1 243.0 0.0 1.8 0.0 116.6 0.0 -4,-6 0.0 4 3.708 MINOR ENSMUSG00000051355 Commd1 ENSMUST00000071068 ENSMUSP00000065079 TRANSLATION protein_coding start - 2 93.0 0.0 2.55 0.1 68.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000051355 Commd1 ENSMUST00000159081 ENSMUSP00000124719 TRANSLATION protein_coding - CCDS24472.1 1 188.0 0.0 3.55 15.2 196.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000051355 Commd1 ENSMUST00000162924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051355 Commd1 ENSMUST00000161944 - NO_TRANSLATION retained_intron ENSMUSG00000051355 Commd1 ENSMUST00000093270 ENSMUSP00000090958 TRANSLATION protein_coding start - 3 140.0 0.0 2.0 0.0 145.5 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000089722 Cd300ld5 ENSMUST00000100239 ENSMUSP00000097810 TRANSLATION protein_coding - CCDS36369.1 1 245.0 0.0 1.0 0.0 52.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000034570 Inpp5j ENSMUST00000110019 ENSMUSP00000105646 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034570 Inpp5j ENSMUST00000148939 ENSMUSP00000139214 TRANSLATION protein_coding start - 1 548.0 3.0 5.105 0.0 29.4 0.0 -4,-2 0.0687 9 -2.0 MINOR ENSMUSG00000034570 Inpp5j ENSMUST00000154756 ENSMUSP00000139302 TRANSLATION non_stop_decay stop - 1 899.0 3.0 5.105 0.0 29.4 0.0 -4,-7 0.0801 17 -2.0 MINOR ENSMUSG00000034570 Inpp5j ENSMUST00000110018 ENSMUSP00000105645 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000034570 Inpp5j ENSMUST00000044507 ENSMUSP00000046625 TRANSLATION protein_coding - CCDS24364.1 1 1003.0 3.0 5.105 3.6 29.4 0.0 -4,-7 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000034570 Inpp5j ENSMUST00000183684 ENSMUSP00000139000 TRANSLATION nonsense_mediated_decay - - 2 41.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000041895 Wipi1 ENSMUST00000153738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041895 Wipi1 ENSMUST00000103060 ENSMUSP00000099349 TRANSLATION protein_coding - CCDS25582.1 1 446.0 0.0 6.025 13.9 0.0 0.0 -4,-5 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000041895 Wipi1 ENSMUST00000106689 ENSMUSP00000102300 TRANSLATION protein_coding - - 1 295.0 0.0 5.4 0.0 0.0 0.0 -4,-5 0.0072 4 4.752 MINOR ENSMUSG00000041895 Wipi1 ENSMUST00000047186 ENSMUSP00000038635 TRANSLATION protein_coding - - 1 437.0 0.0 6.025 1.1 0.0 0.0 -4,-5 0.2177 6 6.032 MINOR ENSMUSG00000049892 Rasd1 ENSMUST00000062405 ENSMUSP00000051959 TRANSLATION protein_coding - CCDS24781.1 1 280.0 19.0 0.92 19.1 124.7 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000020850 Prpf8 ENSMUST00000131283 ENSMUSP00000115635 TRANSLATION protein_coding stop - 1 1044.0 0.0 18.5 0.0 162.7 0.0 -4,-5 0.0063 27 -2.0 MINOR ENSMUSG00000020850 Prpf8 ENSMUST00000133995 - NO_TRANSLATION retained_intron ENSMUSG00000020850 Prpf8 ENSMUST00000018449 ENSMUSP00000018449 TRANSLATION protein_coding - CCDS25048.1 1 2335.0 0.0 41.0 28.2 951.9 0.0 -4,-6 1.0 77 16.0 PRINCIPAL:1 ENSMUSG00000020850 Prpf8 ENSMUST00000102510 ENSMUSP00000099568 TRANSLATION protein_coding - CCDS25048.1 5 2335.0 0.0 41.0 28.2 951.9 0.0 -4,-6 1.0 77 16.0 PRINCIPAL:1 ENSMUSG00000062421 Arf2 ENSMUST00000153092 - NO_TRANSLATION retained_intron ENSMUSG00000062421 Arf2 ENSMUST00000063347 ENSMUSP00000102622 TRANSLATION protein_coding - CCDS25525.1 1 181.0 19.0 4.5 35.4 265.0 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000062421 Arf2 ENSMUST00000154089 ENSMUSP00000120473 TRANSLATION protein_coding stop - 3 101.0 4.0 1.66 0.0 67.8 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000062421 Arf2 ENSMUST00000057921 ENSMUSP00000051814 TRANSLATION protein_coding - CCDS25525.1 1 181.0 19.0 4.5 35.4 265.0 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000020434 4921536K21Rik ENSMUST00000020712 ENSMUSP00000020712 TRANSLATION protein_coding - CCDS24368.1 1 168.0 0.0 2.0 0.1 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000017344 Vtn ENSMUST00000153628 - NO_TRANSLATION retained_intron ENSMUSG00000017344 Vtn ENSMUST00000146997 - NO_TRANSLATION retained_intron ENSMUSG00000017344 Vtn ENSMUST00000017488 ENSMUSP00000017488 TRANSLATION protein_coding - CCDS25106.1 1 478.0 4.0 3.16 1.1 221.3 0.0 3,-2 1.0 8 17.0 PRINCIPAL:1 ENSMUSG00000017344 Vtn ENSMUST00000128479 - NO_TRANSLATION retained_intron ENSMUSG00000010021 Kif19a ENSMUST00000137326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010021 Kif19a ENSMUST00000131782 - NO_TRANSLATION retained_intron ENSMUSG00000010021 Kif19a ENSMUST00000126555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010021 Kif19a ENSMUST00000138804 ENSMUSP00000115663 TRANSLATION protein_coding stop - 5 709.0 11.0 6.95 0.0 196.8 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000010021 Kif19a ENSMUST00000138340 ENSMUSP00000122743 TRANSLATION protein_coding start - 5 269.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000010021 Kif19a ENSMUST00000084368 ENSMUSP00000081398 TRANSLATION protein_coding - CCDS36367.1 1 997.0 11.0 7.95 7.4 366.4 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000010021 Kif19a ENSMUST00000134165 - NO_TRANSLATION retained_intron ENSMUSG00000018566 Slc2a4 ENSMUST00000135437 ENSMUSP00000137092 TRANSLATION protein_coding stop - 5 57.0 0.0 1.75 0.0 43.9 1.0 -2,-5 0.0003 - -2.0 MINOR ENSMUSG00000018566 Slc2a4 ENSMUST00000179298 ENSMUSP00000136726 TRANSLATION protein_coding stop - 3 242.0 0.0 6.16 0.0 218.2 8.0 -4,-5 0.0021 1 -2.0 MINOR ENSMUSG00000018566 Slc2a4 ENSMUST00000178809 - NO_TRANSLATION retained_intron ENSMUSG00000018566 Slc2a4 ENSMUST00000141837 ENSMUSP00000136806 TRANSLATION protein_coding - - 1 480.0 0.0 10.16 0.0 465.3 15.0 -4,-5 0.0127 3 7.176 MINOR ENSMUSG00000018566 Slc2a4 ENSMUST00000152487 ENSMUSP00000136504 TRANSLATION nonsense_mediated_decay start - 5 75.0 0.0 1.15 0.0 0.0 3.0 -4,-6 0.0002 - -2.0 MINOR ENSMUSG00000018566 Slc2a4 ENSMUST00000178363 ENSMUSP00000136455 TRANSLATION nonsense_mediated_decay - - 5 51.0 0.0 1.0 0.0 0.0 3.0 -4,-6 0.0002 - -2.0 MINOR ENSMUSG00000018566 Slc2a4 ENSMUST00000018710 ENSMUSP00000018710 TRANSLATION protein_coding - CCDS36201.1 1 509.0 0.0 11.16 15.7 512.4 16.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000018566 Slc2a4 ENSMUST00000142500 ENSMUSP00000137463 TRANSLATION protein_coding stop - 2 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0069 - -2.0 MINOR ENSMUSG00000041346 Wrap53 ENSMUST00000048139 ENSMUSP00000047825 TRANSLATION protein_coding - CCDS24897.1 1 532.0 0.0 3.45 2.5 39.3 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000041346 Wrap53 ENSMUST00000132548 ENSMUSP00000121040 TRANSLATION protein_coding stop - 5 170.0 0.0 0.18 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041346 Wrap53 ENSMUST00000155894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020617 1700012B07Rik ENSMUST00000143578 ENSMUSP00000115395 TRANSLATION protein_coding stop - 3 187.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0212 - -2.0 MINOR ENSMUSG00000020617 1700012B07Rik ENSMUST00000106674 ENSMUSP00000102285 TRANSLATION protein_coding - CCDS48973.1 1 276.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2765 - 0.0 ALTERNATIVE:2 ENSMUSG00000020617 1700012B07Rik ENSMUST00000020941 ENSMUSP00000020941 TRANSLATION protein_coding - CCDS48972.1 1 263.0 0.0 0.0 0.1 0.0 0.0 -4,-7 0.8666 - 0.0 PRINCIPAL:2 ENSMUSG00000020782 Llgl2 ENSMUST00000132999 - NO_TRANSLATION retained_intron ENSMUSG00000020782 Llgl2 ENSMUST00000128826 ENSMUSP00000118304 TRANSLATION protein_coding start - 3 161.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020782 Llgl2 ENSMUST00000137951 - NO_TRANSLATION retained_intron ENSMUSG00000020782 Llgl2 ENSMUST00000172552 ENSMUSP00000133803 TRANSLATION protein_coding stop - 3 101.0 0.0 3.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020782 Llgl2 ENSMUST00000103032 ENSMUSP00000099321 TRANSLATION protein_coding - CCDS25649.1 1 1027.0 0.0 14.83 0.0 139.2 0.0 -4,-7 1.0 19 8.0 PRINCIPAL:2 ENSMUSG00000020782 Llgl2 ENSMUST00000173289 ENSMUSP00000133790 TRANSLATION protein_coding stop - 5 148.0 0.0 4.25 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020782 Llgl2 ENSMUST00000177736 ENSMUSP00000136054 TRANSLATION protein_coding - CCDS56820.1 2 1051.0 0.0 14.83 0.0 139.2 0.0 -4,-7 0.5513 18 8.0 ALTERNATIVE:2 ENSMUSG00000020782 Llgl2 ENSMUST00000133250 ENSMUSP00000118344 TRANSLATION protein_coding stop - 5 146.0 0.0 4.25 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020782 Llgl2 ENSMUST00000130518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020782 Llgl2 ENSMUST00000137900 ENSMUSP00000119675 TRANSLATION protein_coding stop - 2 158.0 0.0 4.58 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020782 Llgl2 ENSMUST00000155878 ENSMUSP00000117649 TRANSLATION protein_coding stop - 3 128.0 0.0 3.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020782 Llgl2 ENSMUST00000147878 - NO_TRANSLATION retained_intron ENSMUSG00000018727 Cpsf4l ENSMUST00000106617 ENSMUSP00000102228 TRANSLATION protein_coding - - 1 153.0 17.0 3.4 0.0 21.5 0.0 -4,-5 0.0 - 9.002 MINOR ENSMUSG00000018727 Cpsf4l ENSMUST00000018871 ENSMUSP00000018871 TRANSLATION protein_coding - CCDS25602.1 1 190.0 17.0 3.15 0.0 0.0 0.0 -4,-5 0.0061 - 6.504 MINOR ENSMUSG00000018727 Cpsf4l ENSMUST00000100248 ENSMUSP00000097819 TRANSLATION protein_coding - CCDS48977.1 5 280.0 20.0 4.9 0.0 54.8 0.0 -4,-5 0.1484 - 14.0 ALTERNATIVE:2 ENSMUSG00000018727 Cpsf4l ENSMUST00000151396 - NO_TRANSLATION retained_intron ENSMUSG00000018727 Cpsf4l ENSMUST00000173655 ENSMUSP00000133451 TRANSLATION protein_coding - CCDS25603.2 1 228.0 20.0 4.9 0.1 55.7 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000036391 Sec24a ENSMUST00000109092 ENSMUSP00000104720 TRANSLATION protein_coding - - 1 591.0 4.0 6.0 0.0 149.4 0.0 -4,-1 0.0009 7 4.2 MINOR ENSMUSG00000036391 Sec24a ENSMUST00000064297 ENSMUSP00000068065 TRANSLATION protein_coding - - 1 592.0 4.0 6.0 0.0 149.4 0.0 -4,-1 0.0009 7 4.2 MINOR ENSMUSG00000036391 Sec24a ENSMUST00000154325 - NO_TRANSLATION retained_intron ENSMUSG00000036391 Sec24a ENSMUST00000038210 ENSMUSP00000044370 TRANSLATION protein_coding - CCDS70181.1 2 1089.0 4.0 17.5 4.0 536.8 0.0 -4,-1 0.9981 19 14.0 ALTERNATIVE:2 ENSMUSG00000036391 Sec24a ENSMUST00000109097 ENSMUSP00000104725 TRANSLATION protein_coding - CCDS24660.2 1 1090.0 4.0 17.5 4.0 536.8 0.0 -4,-1 1.0 19 14.0 PRINCIPAL:4 ENSMUSG00000036391 Sec24a ENSMUST00000147255 - NO_TRANSLATION retained_intron ENSMUSG00000020451 Limk2 ENSMUST00000110029 ENSMUSP00000105656 TRANSLATION protein_coding - CCDS24360.1 1 451.0 17.0 7.65 0.0 209.4 0.0 -4,-6 0.0047 8 6.006 MINOR ENSMUSG00000020451 Limk2 ENSMUST00000148091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020451 Limk2 ENSMUST00000134576 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020451 Limk2 ENSMUST00000145223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020451 Limk2 ENSMUST00000101640 ENSMUSP00000099163 TRANSLATION protein_coding - - 5 623.0 17.0 10.648 14.7 297.6 0.0 -4,-6 0.7646 12 17.334 ALTERNATIVE:1 ENSMUSG00000020451 Limk2 ENSMUST00000123689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020451 Limk2 ENSMUST00000132479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020451 Limk2 ENSMUST00000101638 ENSMUSP00000099162 TRANSLATION protein_coding - CCDS24358.1 1 638.0 17.0 10.45 14.5 321.9 0.0 -4,-6 1.0 13 17.544 PRINCIPAL:3 ENSMUSG00000020451 Limk2 ENSMUST00000148771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020451 Limk2 ENSMUST00000125832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020451 Limk2 ENSMUST00000101642 ENSMUSP00000099165 TRANSLATION protein_coding - CCDS24359.1 1 617.0 17.0 10.45 14.7 297.7 0.0 -4,-6 0.8968 12 16.938 MINOR ENSMUSG00000020451 Limk2 ENSMUST00000142926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020451 Limk2 ENSMUST00000147344 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018412 Kansl1 ENSMUST00000106971 ENSMUSP00000102584 TRANSLATION protein_coding - - 5 1099.0 0.0 0.0 10.3 137.8 0.0 -4,-5 0.7856 13 3.0 PRINCIPAL:3 ENSMUSG00000018412 Kansl1 ENSMUST00000106972 ENSMUSP00000102585 TRANSLATION protein_coding - - 5 1099.0 0.0 0.0 10.3 137.8 0.0 -4,-5 0.7856 13 3.0 PRINCIPAL:3 ENSMUSG00000018412 Kansl1 ENSMUST00000106977 ENSMUSP00000102590 TRANSLATION protein_coding - CCDS48953.1 1 1036.0 0.0 0.0 10.3 137.8 0.0 -4,-5 1.0 12 3.0 ALTERNATIVE:1 ENSMUSG00000018412 Kansl1 ENSMUST00000134266 ENSMUSP00000116367 TRANSLATION protein_coding stop - 3 91.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018412 Kansl1 ENSMUST00000069188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018412 Kansl1 ENSMUST00000018556 ENSMUSP00000018556 TRANSLATION protein_coding - CCDS48953.1 1 1036.0 0.0 0.0 10.3 137.8 0.0 -4,-5 1.0 12 3.0 ALTERNATIVE:1 ENSMUSG00000035355 Kcnh4 ENSMUST00000107363 ENSMUSP00000102986 TRANSLATION protein_coding - CCDS36334.1 5 1018.0 0.0 7.82 6.0 178.6 5.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000035355 Kcnh4 ENSMUST00000107361 ENSMUSP00000102984 TRANSLATION protein_coding - CCDS36334.1 5 1018.0 0.0 7.82 6.0 178.6 5.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000069717 Gm11568 ENSMUST00000107434 ENSMUSP00000103057 TRANSLATION protein_coding - CCDS56803.1 - 211.0 0.0 0.0 0.0 44.5 0.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000018574 Acadvl ENSMUST00000018718 ENSMUSP00000018718 TRANSLATION protein_coding - - 5 634.0 29.0 15.0 3.9 295.9 0.0 -4,0 0.3234 38 18.906 MINOR ENSMUSG00000018574 Acadvl ENSMUST00000146129 - NO_TRANSLATION retained_intron ENSMUSG00000018574 Acadvl ENSMUST00000134516 - NO_TRANSLATION retained_intron ENSMUSG00000018574 Acadvl ENSMUST00000102574 ENSMUSP00000099634 TRANSLATION protein_coding - CCDS24931.1 1 656.0 29.0 15.0 10.6 295.9 0.0 -4,0 1.0 39 21.0 PRINCIPAL:1 ENSMUSG00000018574 Acadvl ENSMUST00000156733 - NO_TRANSLATION retained_intron ENSMUSG00000018574 Acadvl ENSMUST00000137187 - NO_TRANSLATION retained_intron ENSMUSG00000018574 Acadvl ENSMUST00000145478 - NO_TRANSLATION retained_intron ENSMUSG00000035007 Rundc1 ENSMUST00000040561 ENSMUSP00000042151 TRANSLATION protein_coding - CCDS25469.1 1 615.0 0.0 0.0 4.5 114.3 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000020334 Slc22a4 ENSMUST00000020586 ENSMUSP00000020586 TRANSLATION protein_coding - CCDS24689.1 1 553.0 0.0 7.5 19.8 99.5 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000020334 Slc22a4 ENSMUST00000146351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020334 Slc22a4 ENSMUST00000154369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000085683 Tmem238l ENSMUST00000211300 ENSMUSP00000147820 TRANSLATION protein_coding - - 3 79.0 0.0 1.0 2.5 92.1 3.0 -1,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000085683 Tmem238l ENSMUST00000127166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000085683 Tmem238l ENSMUST00000150220 ENSMUSP00000147625 TRANSLATION protein_coding start - 3 76.0 0.0 1.0 0.0 92.1 3.0 -1,-5 0.1301 - -2.0 MINOR ENSMUSG00000017316 Ppy ENSMUST00000170554 ENSMUSP00000126798 TRANSLATION protein_coding - CCDS25486.1 1 100.0 0.0 0.8 0.4 57.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000017316 Ppy ENSMUST00000017460 ENSMUSP00000017460 TRANSLATION protein_coding - CCDS25486.1 1 100.0 0.0 0.8 0.4 57.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020513 Tubd1 ENSMUST00000069503 ENSMUSP00000064383 TRANSLATION protein_coding - CCDS25202.1 1 455.0 21.0 3.43 24.2 198.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000020513 Tubd1 ENSMUST00000108030 ENSMUSP00000103665 TRANSLATION protein_coding - CCDS56794.1 1 486.0 21.0 2.43 0.0 198.3 0.0 -4,-5 0.0448 - 16.002 MINOR ENSMUSG00000020513 Tubd1 ENSMUST00000020821 ENSMUSP00000020821 TRANSLATION protein_coding - CCDS56794.1 1 486.0 21.0 2.43 0.0 198.3 0.0 -4,-5 0.0448 - 16.002 MINOR ENSMUSG00000020513 Tubd1 ENSMUST00000164931 ENSMUSP00000130621 TRANSLATION protein_coding start - 3 189.0 4.0 1.28 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020513 Tubd1 ENSMUST00000167178 ENSMUSP00000130909 TRANSLATION protein_coding - CCDS25202.1 1 455.0 21.0 3.43 24.2 198.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000050830 Vwc2 ENSMUST00000154155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050830 Vwc2 ENSMUST00000129670 ENSMUSP00000128761 TRANSLATION nonsense_mediated_decay - CCDS36111.1 1 324.0 0.0 2.4 7.9 35.3 0.0 0,-3 1.0 - -2.0 MINOR ENSMUSG00000050830 Vwc2 ENSMUST00000109681 ENSMUSP00000105303 TRANSLATION protein_coding - CCDS36111.1 1 324.0 0.0 2.4 7.9 35.3 0.0 0,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000050830 Vwc2 ENSMUST00000056344 ENSMUSP00000049692 TRANSLATION protein_coding - CCDS36111.1 1 324.0 0.0 2.4 7.9 35.3 0.0 0,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000062312 Erbb2 ENSMUST00000138066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062312 Erbb2 ENSMUST00000136032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062312 Erbb2 ENSMUST00000058295 ENSMUSP00000053897 TRANSLATION protein_coding - CCDS25349.1 1 1256.0 0.0 21.55 9.2 692.0 0.0 3,-2 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000039275 Foxk2 ENSMUST00000106113 ENSMUSP00000101719 TRANSLATION protein_coding - CCDS36393.2 1 651.0 0.0 2.0 0.0 176.5 0.0 -3,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000039275 Foxk2 ENSMUST00000153579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039275 Foxk2 ENSMUST00000151492 - NO_TRANSLATION retained_intron ENSMUSG00000042988 Notum ENSMUST00000150458 ENSMUSP00000122788 TRANSLATION protein_coding stop - 3 215.0 0.0 3.73 0.0 137.3 0.0 2,-2 0.0013 - -2.0 MINOR ENSMUSG00000042988 Notum ENSMUST00000055439 - NO_TRANSLATION retained_intron ENSMUSG00000042988 Notum ENSMUST00000106177 ENSMUSP00000101783 TRANSLATION protein_coding - CCDS49007.1 5 503.0 0.0 8.98 4.3 300.5 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042988 Notum ENSMUST00000106178 ENSMUSP00000101784 TRANSLATION protein_coding - CCDS49007.1 1 503.0 0.0 8.98 4.3 300.5 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000004296 Il12b ENSMUST00000102796 ENSMUSP00000099860 TRANSLATION protein_coding - CCDS24563.1 1 335.0 0.0 5.1 0.1 76.9 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000004296 Il12b ENSMUST00000170513 ENSMUSP00000125867 TRANSLATION protein_coding - CCDS24563.1 5 335.0 0.0 5.1 0.1 76.9 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078622 Ccdc47 ENSMUST00000153982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078622 Ccdc47 ENSMUST00000125383 ENSMUSP00000122736 TRANSLATION protein_coding start - 2 224.0 0.0 0.0 0.0 168.2 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000078622 Ccdc47 ENSMUST00000137915 ENSMUSP00000117127 TRANSLATION protein_coding stop - 2 138.0 0.0 0.0 0.0 94.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000078622 Ccdc47 ENSMUST00000106865 ENSMUSP00000102478 TRANSLATION protein_coding - - 1 167.0 0.0 0.0 0.0 114.7 0.0 -4,-5 0.0 6 0.0 MINOR ENSMUSG00000078622 Ccdc47 ENSMUST00000002043 ENSMUSP00000002043 TRANSLATION protein_coding - CCDS25551.1 1 483.0 0.0 0.0 22.0 315.2 0.0 3,-1 1.0 14 10.0 PRINCIPAL:1 ENSMUSG00000018239 Zcchc10 ENSMUST00000018383 ENSMUSP00000018383 TRANSLATION protein_coding - CCDS24675.1 1 178.0 4.0 1.83 0.0 65.1 0.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000018239 Zcchc10 ENSMUST00000141585 ENSMUSP00000130089 TRANSLATION nonsense_mediated_decay start - 5 29.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000060938 Rpl26 ENSMUST00000138973 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060938 Rpl26 ENSMUST00000073471 ENSMUSP00000073175 TRANSLATION protein_coding - CCDS36187.1 1 145.0 0.0 3.0 36.9 181.2 0.0 -4,-2 1.0 10 12.0 PRINCIPAL:3 ENSMUSG00000060938 Rpl26 ENSMUST00000128952 ENSMUSP00000119329 TRANSLATION protein_coding stop - 2 103.0 0.0 2.0 0.0 145.2 0.0 -4,-2 0.0 9 -2.0 MINOR ENSMUSG00000060938 Rpl26 ENSMUST00000167436 ENSMUSP00000129072 TRANSLATION protein_coding - CCDS36187.1 1 145.0 0.0 3.0 36.9 181.2 0.0 -4,-2 1.0 10 12.0 PRINCIPAL:3 ENSMUSG00000060938 Rpl26 ENSMUST00000101014 ENSMUSP00000098576 TRANSLATION protein_coding - - 5 143.0 0.0 3.0 36.9 172.8 0.0 -4,-2 0.8088 8 11.334 ALTERNATIVE:1 ENSMUSG00000060938 Rpl26 ENSMUST00000134403 - NO_TRANSLATION retained_intron ENSMUSG00000010841 Cfap97d1 ENSMUST00000010985 ENSMUSP00000010985 TRANSLATION protein_coding - CCDS48938.1 1 164.0 0.0 4.18 12.5 74.9 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000010841 Cfap97d1 ENSMUST00000175972 ENSMUSP00000135566 TRANSLATION protein_coding stop - 5 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010841 Cfap97d1 ENSMUST00000176722 ENSMUSP00000134890 TRANSLATION protein_coding - - 3 113.0 0.0 3.25 0.7 53.4 0.0 -4,-5 0.0124 1 8.418 MINOR ENSMUSG00000043485 Krt34 ENSMUST00000056362 ENSMUSP00000056622 TRANSLATION protein_coding - CCDS25404.1 1 392.0 0.0 4.35 2.5 360.6 0.0 -4,-6 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000047342 Zfp286 ENSMUST00000207474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047342 Zfp286 ENSMUST00000138105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047342 Zfp286 ENSMUST00000054654 ENSMUSP00000055517 TRANSLATION protein_coding - CCDS24831.1 1 519.0 40.0 1.9 0.8 319.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000047342 Zfp286 ENSMUST00000140072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047342 Zfp286 ENSMUST00000152602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047342 Zfp286 ENSMUST00000149215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047342 Zfp286 ENSMUST00000207597 ENSMUSP00000147022 TRANSLATION protein_coding - - 5 201.0 0.0 0.9 0.0 60.1 0.0 -4,-5 0.0 - 2.844 MINOR ENSMUSG00000047342 Zfp286 ENSMUST00000149230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047342 Zfp286 ENSMUST00000139798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047342 Zfp286 ENSMUST00000108705 ENSMUSP00000104345 TRANSLATION protein_coding - - 1 156.0 0.0 0.9 0.0 60.1 0.0 -4,-5 0.0 - 2.844 MINOR ENSMUSG00000047342 Zfp286 ENSMUST00000145474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036264 Fstl4 ENSMUST00000036796 ENSMUSP00000042007 TRANSLATION protein_coding - CCDS24673.1 1 841.0 0.0 3.727 10.5 120.7 0.0 2,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000020846 Rflnb ENSMUST00000021207 ENSMUSP00000021207 TRANSLATION protein_coding - CCDS48851.1 1 216.0 0.0 1.8 7.7 308.8 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000046207 Pik3r6 ENSMUST00000060441 ENSMUSP00000052522 TRANSLATION protein_coding - CCDS36186.1 1 756.0 0.0 0.0 0.4 177.9 0.0 -4,-5 0.3094 5 5.736 MINOR ENSMUSG00000046207 Pik3r6 ENSMUST00000153671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046207 Pik3r6 ENSMUST00000131669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046207 Pik3r6 ENSMUST00000102613 ENSMUSP00000099673 TRANSLATION protein_coding - CCDS24866.1 1 752.0 0.0 0.0 5.7 182.3 0.0 -4,-5 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000046207 Pik3r6 ENSMUST00000126069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025162 Csnk1d ENSMUST00000146837 ENSMUSP00000115055 TRANSLATION nonsense_mediated_decay start - 3 68.0 10.0 1.55 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025162 Csnk1d ENSMUST00000154483 ENSMUSP00000117472 TRANSLATION protein_coding start/stop - 3 218.0 12.0 3.75 0.0 71.4 0.0 -4,-7 0.0008 1 -2.0 MINOR ENSMUSG00000025162 Csnk1d ENSMUST00000018274 ENSMUSP00000018274 TRANSLATION protein_coding - CCDS25762.1 1 415.0 20.0 6.58 26.3 96.3 0.0 -4,-7 0.9801 5 15.476 PRINCIPAL:3 ENSMUSG00000025162 Csnk1d ENSMUST00000139267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025162 Csnk1d ENSMUST00000131375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025162 Csnk1d ENSMUST00000070575 ENSMUSP00000070721 TRANSLATION protein_coding - CCDS25763.1 1 409.0 20.0 6.58 30.1 96.3 0.0 -4,-7 1.0 4 16.0 ALTERNATIVE:1 ENSMUSG00000025162 Csnk1d ENSMUST00000141071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025162 Csnk1d ENSMUST00000155070 - NO_TRANSLATION retained_intron ENSMUSG00000025162 Csnk1d ENSMUST00000239115 ENSMUSP00000158953 TRANSLATION protein_coding - - - 428.0 20.0 6.58 7.7 96.3 0.0 -4,-7 0.379 4 12.92 MINOR ENSMUSG00000038013 Wipf2 ENSMUST00000037480 ENSMUSP00000046991 TRANSLATION protein_coding - CCDS25366.1 1 440.0 0.0 0.8 0.0 35.4 0.0 -4,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000038013 Wipf2 ENSMUST00000132006 - NO_TRANSLATION retained_intron ENSMUSG00000038013 Wipf2 ENSMUST00000142414 ENSMUSP00000123244 TRANSLATION protein_coding stop - 2 183.0 0.0 0.8 0.0 35.4 0.0 -4,-5 0.0572 5 -2.0 MINOR ENSMUSG00000038013 Wipf2 ENSMUST00000148439 - NO_TRANSLATION retained_intron ENSMUSG00000020441 2310033P09Rik ENSMUST00000020719 ENSMUSP00000020719 TRANSLATION protein_coding - CCDS24764.1 1 260.0 0.0 0.8 4.7 106.8 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000020894 Vamp2 ENSMUST00000149780 - NO_TRANSLATION retained_intron ENSMUSG00000020894 Vamp2 ENSMUST00000117780 ENSMUSP00000112611 TRANSLATION protein_coding - - 2 163.0 0.0 2.5 0.0 115.5 0.0 -4,-7 0.0282 2 11.748 MINOR ENSMUSG00000020894 Vamp2 ENSMUST00000021273 ENSMUSP00000021273 TRANSLATION protein_coding - CCDS24881.1 1 116.0 0.0 2.5 14.5 119.7 1.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000020894 Vamp2 ENSMUST00000249656 ENSMUSP00000159835 TRANSLATION nonsense_mediated_decay - - - 43.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020894 Vamp2 ENSMUST00000146847 - NO_TRANSLATION retained_intron ENSMUSG00000020894 Vamp2 ENSMUST00000149559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020309 Chac2 ENSMUST00000020553 ENSMUSP00000020553 TRANSLATION protein_coding - CCDS70154.1 1 166.0 0.0 2.0 0.8 188.4 0.0 -4,-6 0.0255 3 8.406 MINOR ENSMUSG00000020309 Chac2 ENSMUST00000101394 ENSMUSP00000098942 TRANSLATION protein_coding - CCDS24510.1 1 178.0 0.0 2.5 4.8 228.3 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000041828 Abca8a ENSMUST00000100287 ENSMUSP00000097860 TRANSLATION protein_coding - - 5 1620.0 18.0 10.0805 0.0 334.1 11.0 -4,-7 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000041828 Abca8a ENSMUST00000141279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041828 Abca8a ENSMUST00000154849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041828 Abca8a ENSMUST00000146635 ENSMUSP00000114393 TRANSLATION protein_coding start/stop - 5 211.0 9.0 2.8585 0.0 66.1 1.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000041828 Abca8a ENSMUST00000129810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041828 Abca8a ENSMUST00000106662 ENSMUSP00000102273 TRANSLATION protein_coding stop - 5 134.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000034156 Tspoap1 ENSMUST00000148814 - NO_TRANSLATION retained_intron ENSMUSG00000034156 Tspoap1 ENSMUST00000148422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034156 Tspoap1 ENSMUST00000144502 ENSMUSP00000122665 TRANSLATION protein_coding start/stop - 5 251.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034156 Tspoap1 ENSMUST00000142329 ENSMUSP00000118819 TRANSLATION protein_coding start - 1 384.0 0.0 5.083 0.0 98.8 0.0 -4,-5 0.0017 2 -2.0 MINOR ENSMUSG00000034156 Tspoap1 ENSMUST00000133645 ENSMUSP00000117356 TRANSLATION protein_coding start/stop - 5 169.0 0.0 2.583 0.0 48.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034156 Tspoap1 ENSMUST00000100644 ENSMUSP00000098209 TRANSLATION protein_coding - - 5 1786.0 0.0 9.962 0.0 138.5 0.0 -4,-5 1.0 11 8.0 PRINCIPAL:4 ENSMUSG00000034156 Tspoap1 ENSMUST00000039627 ENSMUSP00000048063 TRANSLATION protein_coding - CCDS48879.1 5 1846.0 0.0 9.962 0.4 138.5 0.0 -4,-5 0.7746 11 8.0 ALTERNATIVE:2 ENSMUSG00000034156 Tspoap1 ENSMUST00000135957 - NO_TRANSLATION retained_intron ENSMUSG00000034156 Tspoap1 ENSMUST00000153578 - NO_TRANSLATION retained_intron ENSMUSG00000034156 Tspoap1 ENSMUST00000154758 - NO_TRANSLATION retained_intron ENSMUSG00000020895 Tmem107 ENSMUST00000152142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020895 Tmem107 ENSMUST00000146646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020895 Tmem107 ENSMUST00000123821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020895 Tmem107 ENSMUST00000123038 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020895 Tmem107 ENSMUST00000125215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020895 Tmem107 ENSMUST00000128323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020895 Tmem107 ENSMUST00000094081 ENSMUSP00000091624 TRANSLATION protein_coding - CCDS24880.1 1 143.0 0.0 3.5 0.0 146.2 3.0 -1,-5 0.071 - 9.9 MINOR ENSMUSG00000020895 Tmem107 ENSMUST00000075980 ENSMUSP00000075363 TRANSLATION protein_coding - CCDS24879.1 1 140.0 0.0 4.25 32.9 156.2 4.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000001100 Poldip2 ENSMUST00000147930 - NO_TRANSLATION retained_intron ENSMUSG00000001100 Poldip2 ENSMUST00000156754 - NO_TRANSLATION retained_intron ENSMUSG00000001100 Poldip2 ENSMUST00000151499 - NO_TRANSLATION retained_intron ENSMUSG00000001100 Poldip2 ENSMUST00000136284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001100 Poldip2 ENSMUST00000133601 ENSMUSP00000127708 TRANSLATION nonsense_mediated_decay start - 5 284.0 0.0 1.8125 0.0 100.9 0.0 -4,0 0.0 11 -2.0 MINOR ENSMUSG00000001100 Poldip2 ENSMUST00000001127 ENSMUSP00000001127 TRANSLATION protein_coding - CCDS25109.1 1 368.0 0.0 3.5625 10.7 142.3 0.0 -2,2 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000018932 Map2k3 ENSMUST00000130269 ENSMUSP00000114430 TRANSLATION nonsense_mediated_decay - - 1 173.0 15.0 3.3 0.0 46.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000018932 Map2k3 ENSMUST00000126043 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018932 Map2k3 ENSMUST00000137609 - NO_TRANSLATION retained_intron ENSMUSG00000018932 Map2k3 ENSMUST00000145828 - NO_TRANSLATION retained_intron ENSMUSG00000018932 Map2k3 ENSMUST00000019076 ENSMUSP00000019076 TRANSLATION protein_coding - CCDS24804.1 1 347.0 22.0 7.8 9.2 193.8 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000018932 Map2k3 ENSMUST00000137739 - NO_TRANSLATION retained_intron ENSMUSG00000018433 Nol11 ENSMUST00000018577 ENSMUSP00000018577 TRANSLATION protein_coding - CCDS25566.1 1 723.0 0.0 0.0 2.5 79.3 0.0 -4,-5 1.0 10 3.0 PRINCIPAL:2 ENSMUSG00000018433 Nol11 ENSMUST00000106757 ENSMUSP00000102368 TRANSLATION protein_coding - CCDS48965.1 1 703.0 0.0 0.0 0.3 79.3 0.0 -4,-5 0.3127 9 2.0 ALTERNATIVE:2 ENSMUSG00000018433 Nol11 ENSMUST00000122966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018433 Nol11 ENSMUST00000139168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018433 Nol11 ENSMUST00000136917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018507 Trpv2 ENSMUST00000153486 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018507 Trpv2 ENSMUST00000018651 ENSMUSP00000018651 TRANSLATION protein_coding - CCDS24827.1 2 756.0 7.0 11.0 2.9 103.9 5.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000018507 Trpv2 ENSMUST00000102643 ENSMUSP00000099703 TRANSLATION protein_coding - CCDS24827.1 5 756.0 7.0 11.0 2.9 103.9 5.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000018507 Trpv2 ENSMUST00000151195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018507 Trpv2 ENSMUST00000130569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017466 Timp2 ENSMUST00000249109 ENSMUSP00000159584 TRANSLATION protein_coding - - - 143.0 0.0 3.0 2.0 165.0 0.0 -4,-5 0.0246 4 3.592 MINOR ENSMUSG00000017466 Timp2 ENSMUST00000017610 ENSMUSP00000017610 TRANSLATION protein_coding - CCDS25699.1 1 220.0 0.0 4.8 19.1 248.8 0.0 3,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000017466 Timp2 ENSMUST00000249110 ENSMUSP00000159585 TRANSLATION protein_coding - - - 143.0 0.0 3.0 2.0 165.0 0.0 -4,-5 0.0246 4 3.592 MINOR ENSMUSG00000017466 Timp2 ENSMUST00000155707 ENSMUSP00000122642 TRANSLATION protein_coding stop - 3 143.0 0.0 3.0 2.0 165.0 0.0 -4,-5 0.0246 4 -2.0 MINOR ENSMUSG00000059995 Atxn7l3 ENSMUST00000145484 - NO_TRANSLATION retained_intron ENSMUSG00000059995 Atxn7l3 ENSMUST00000137387 ENSMUSP00000122610 TRANSLATION protein_coding start - 5 350.0 9.0 4.48 0.0 93.6 0.0 -4,-5 0.0903 2 -2.0 MINOR ENSMUSG00000059995 Atxn7l3 ENSMUST00000107132 ENSMUSP00000102750 TRANSLATION protein_coding - CCDS48942.1 5 354.0 9.0 4.48 9.1 93.6 0.0 -4,-5 0.9531 2 16.532 ALTERNATIVE:1 ENSMUSG00000059995 Atxn7l3 ENSMUST00000073234 ENSMUSP00000072967 TRANSLATION protein_coding - CCDS48941.1 1 347.0 9.0 4.48 10.6 93.6 0.0 -4,-5 1.0 2 17.0 PRINCIPAL:4 ENSMUSG00000059995 Atxn7l3 ENSMUST00000141516 ENSMUSP00000121917 TRANSLATION protein_coding start - 5 258.0 5.0 2.18 0.0 29.6 0.0 -4,-7 0.0192 1 -2.0 MINOR ENSMUSG00000059995 Atxn7l3 ENSMUST00000107134 ENSMUSP00000102752 TRANSLATION protein_coding - CCDS48941.1 5 347.0 9.0 4.48 10.6 93.6 0.0 -4,-5 1.0 2 17.0 PRINCIPAL:4 ENSMUSG00000001444 Tbx21 ENSMUST00000001484 ENSMUSP00000001484 TRANSLATION protein_coding - CCDS25315.1 1 530.0 0.0 3.95 8.0 262.8 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000020694 Tlk2 ENSMUST00000106941 ENSMUSP00000102554 TRANSLATION protein_coding - CCDS48954.1 1 750.0 17.0 4.578 10.9 210.9 0.0 -4,-5 1.0 11 17.0 PRINCIPAL:3 ENSMUSG00000020694 Tlk2 ENSMUST00000092537 ENSMUSP00000090198 TRANSLATION protein_coding - CCDS79062.1 1 697.0 17.0 3.698 0.0 175.0 0.0 -4,-5 0.0083 8 10.242 MINOR ENSMUSG00000020694 Tlk2 ENSMUST00000015107 ENSMUSP00000015107 TRANSLATION protein_coding - CCDS36356.2 5 718.0 17.0 4.578 8.0 210.9 0.0 -4,-5 0.8932 10 16.121 ALTERNATIVE:1 ENSMUSG00000020694 Tlk2 ENSMUST00000126054 - NO_TRANSLATION retained_intron ENSMUSG00000020694 Tlk2 ENSMUST00000106939 ENSMUSP00000102552 TRANSLATION protein_coding - CCDS36356.2 1 718.0 17.0 4.578 8.0 210.9 0.0 -4,-5 0.8932 10 16.121 ALTERNATIVE:1 ENSMUSG00000020694 Tlk2 ENSMUST00000126175 ENSMUSP00000120944 TRANSLATION nonsense_mediated_decay - - 1 112.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020694 Tlk2 ENSMUST00000145048 ENSMUSP00000118520 TRANSLATION protein_coding - CCDS79063.1 1 633.0 17.0 3.698 0.0 175.0 0.0 -4,-5 0.0028 5 10.242 MINOR ENSMUSG00000020694 Tlk2 ENSMUST00000146910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020694 Tlk2 ENSMUST00000123050 - NO_TRANSLATION retained_intron ENSMUSG00000020694 Tlk2 ENSMUST00000152404 ENSMUSP00000123179 TRANSLATION protein_coding start/stop - 5 234.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 7 -2.0 MINOR ENSMUSG00000020694 Tlk2 ENSMUST00000134419 - NO_TRANSLATION retained_intron ENSMUSG00000020694 Tlk2 ENSMUST00000149459 ENSMUSP00000121897 TRANSLATION protein_coding stop - 5 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018672 Copz2 ENSMUST00000018816 ENSMUSP00000018816 TRANSLATION protein_coding - CCDS25305.1 1 205.0 0.0 4.43 8.5 122.3 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000018672 Copz2 ENSMUST00000155696 - NO_TRANSLATION retained_intron ENSMUSG00000018672 Copz2 ENSMUST00000147710 ENSMUSP00000118356 TRANSLATION nonsense_mediated_decay start - 3 51.0 0.0 0.83 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000018672 Copz2 ENSMUST00000145633 ENSMUSP00000119593 TRANSLATION nonsense_mediated_decay - - 5 68.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000018672 Copz2 ENSMUST00000154191 - NO_TRANSLATION retained_intron ENSMUSG00000042436 Mfap4 ENSMUST00000126308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042436 Mfap4 ENSMUST00000040522 ENSMUSP00000038971 TRANSLATION protein_coding - CCDS83820.1 2 281.0 8.0 3.0625 0.0 220.9 0.0 4,-1 0.0654 1 15.978 MINOR ENSMUSG00000042436 Mfap4 ENSMUST00000064783 ENSMUSP00000070848 TRANSLATION protein_coding - CCDS24813.1 1 257.0 8.0 3.625 2.2 235.8 0.0 4,-1 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000042436 Mfap4 ENSMUST00000127073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073063 Hbq1b ENSMUST00000151724 - NO_TRANSLATION retained_intron ENSMUSG00000073063 Hbq1b ENSMUST00000101387 ENSMUSP00000098936 TRANSLATION protein_coding - CCDS24524.1 1 142.0 21.0 3.0 16.5 83.7 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000018362 Kpna2 ENSMUST00000140362 ENSMUSP00000118679 TRANSLATION protein_coding start/stop - 3 189.0 0.0 4.08 0.0 145.6 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000018362 Kpna2 ENSMUST00000144834 ENSMUSP00000121655 TRANSLATION protein_coding stop - 3 163.0 0.0 3.75 0.0 145.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000018362 Kpna2 ENSMUST00000124541 ENSMUSP00000114636 TRANSLATION protein_coding stop - 2 170.0 0.0 4.08 0.0 145.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000018362 Kpna2 ENSMUST00000106768 ENSMUSP00000102379 TRANSLATION protein_coding - - 2 80.0 0.0 1.75 0.0 80.1 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000018362 Kpna2 ENSMUST00000145331 ENSMUSP00000122983 TRANSLATION nonsense_mediated_decay - - 1 75.0 0.0 1.75 0.0 80.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000018362 Kpna2 ENSMUST00000156495 - NO_TRANSLATION retained_intron ENSMUSG00000018362 Kpna2 ENSMUST00000018506 ENSMUSP00000018506 TRANSLATION protein_coding - CCDS25565.1 1 529.0 0.0 9.83 27.9 478.0 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000020808 Pimreg ENSMUST00000122871 ENSMUSP00000123099 TRANSLATION protein_coding stop - 2 77.0 0.0 0.0 0.0 110.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020808 Pimreg ENSMUST00000127369 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020808 Pimreg ENSMUST00000125655 ENSMUSP00000119424 TRANSLATION protein_coding stop - 2 116.0 0.0 0.0 0.0 193.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020808 Pimreg ENSMUST00000021164 ENSMUSP00000021164 TRANSLATION protein_coding - CCDS48840.1 1 231.0 0.0 0.0 4.7 336.8 0.0 -4,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000020808 Pimreg ENSMUST00000133880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020925 Ccdc43 ENSMUST00000153157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020925 Ccdc43 ENSMUST00000092569 ENSMUSP00000090230 TRANSLATION protein_coding - CCDS25502.1 1 222.0 0.0 0.0 7.3 0.0 0.0 -4,-5 1.0 2 2.0 PRINCIPAL:1 ENSMUSG00000020925 Ccdc43 ENSMUST00000124869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020925 Ccdc43 ENSMUST00000138147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042371 Slc5a10 ENSMUST00000151780 ENSMUSP00000118196 TRANSLATION protein_coding start - 5 567.0 0.0 10.4375 1.0 258.4 14.0 -4,-7 0.0505 1 -2.0 MINOR ENSMUSG00000042371 Slc5a10 ENSMUST00000051552 ENSMUSP00000054407 TRANSLATION protein_coding - CCDS24818.1 1 596.0 0.0 11.1875 5.9 456.9 14.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000042371 Slc5a10 ENSMUST00000128196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042371 Slc5a10 ENSMUST00000148584 ENSMUSP00000114523 TRANSLATION protein_coding - CCDS24818.1 1 596.0 0.0 11.1875 5.9 456.9 14.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000020697 Lig3 ENSMUST00000092849 ENSMUSP00000090525 TRANSLATION protein_coding - CCDS25147.1 1 1012.0 18.0 14.21 5.0 561.9 0.0 -4,-7 1.0 23 16.0 ALTERNATIVE:1 ENSMUSG00000020697 Lig3 ENSMUST00000173727 ENSMUSP00000133849 TRANSLATION protein_coding - CCDS70266.1 1 1011.0 18.0 14.07 5.0 561.9 0.0 -4,-7 0.9931 24 15.718 PRINCIPAL:3 ENSMUSG00000020697 Lig3 ENSMUST00000173347 ENSMUSP00000134300 TRANSLATION protein_coding - CCDS70266.1 1 1011.0 18.0 14.07 5.0 561.9 0.0 -4,-7 0.9931 24 15.718 PRINCIPAL:3 ENSMUSG00000020697 Lig3 ENSMUST00000080461 ENSMUSP00000079317 TRANSLATION protein_coding - - 5 953.0 18.0 12.46 3.4 471.3 0.0 -4,-7 0.2234 21 11.416 MINOR ENSMUSG00000020697 Lig3 ENSMUST00000155818 - NO_TRANSLATION retained_intron ENSMUSG00000020697 Lig3 ENSMUST00000172837 ENSMUSP00000134101 TRANSLATION protein_coding start - 3 174.0 0.0 1.5 0.0 64.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020697 Lig3 ENSMUST00000172609 - NO_TRANSLATION retained_intron ENSMUSG00000020697 Lig3 ENSMUST00000131537 ENSMUSP00000133672 TRANSLATION protein_coding - - 1 431.0 4.0 4.79 0.0 188.6 0.0 -4,-7 0.0 7 1.142 MINOR ENSMUSG00000020697 Lig3 ENSMUST00000173722 ENSMUSP00000133805 TRANSLATION protein_coding - CCDS25147.1 5 1012.0 18.0 14.21 5.0 561.9 0.0 -4,-7 1.0 23 16.0 ALTERNATIVE:1 ENSMUSG00000020697 Lig3 ENSMUST00000154887 - NO_TRANSLATION retained_intron ENSMUSG00000020697 Lig3 ENSMUST00000173009 ENSMUSP00000133348 TRANSLATION protein_coding - - 1 431.0 4.0 4.79 0.0 188.6 0.0 -4,-7 0.0 7 1.142 MINOR ENSMUSG00000046756 Mrps7 ENSMUST00000058109 ENSMUSP00000053033 TRANSLATION protein_coding - CCDS25642.1 1 242.0 0.0 3.75 11.2 131.6 0.0 -1,1 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000046756 Mrps7 ENSMUST00000141556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043648 Pld6 ENSMUST00000125307 ENSMUSP00000115503 TRANSLATION protein_coding - CCDS70199.1 1 221.0 4.0 1.64 2.9 95.9 0.0 1,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000043648 Pld6 ENSMUST00000051493 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001441 Npepps ENSMUST00000168743 ENSMUSP00000127127 TRANSLATION protein_coding start/stop - 3 247.0 0.0 5.46 0.0 0.0 0.0 -4,0 0.0005 8 -2.0 MINOR ENSMUSG00000001441 Npepps ENSMUST00000154917 ENSMUSP00000127631 TRANSLATION nonsense_mediated_decay - - 3 119.0 0.0 1.63 0.0 0.0 0.0 -2,0 0.0004 1 -2.0 MINOR ENSMUSG00000001441 Npepps ENSMUST00000152546 ENSMUSP00000129623 TRANSLATION nonsense_mediated_decay start - 2 15.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0054 - -2.0 MINOR ENSMUSG00000001441 Npepps ENSMUST00000165489 - NO_TRANSLATION retained_intron ENSMUSG00000001441 Npepps ENSMUST00000172108 ENSMUSP00000127801 TRANSLATION protein_coding - - 5 889.0 12.0 20.2 0.0 581.8 0.0 -2,0 0.0651 35 13.812 MINOR ENSMUSG00000001441 Npepps ENSMUST00000154372 ENSMUSP00000119644 TRANSLATION nonsense_mediated_decay start - 5 81.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001441 Npepps ENSMUST00000147287 - NO_TRANSLATION retained_intron ENSMUSG00000001441 Npepps ENSMUST00000109294 - NO_TRANSLATION retained_intron ENSMUSG00000001441 Npepps ENSMUST00000133907 - NO_TRANSLATION retained_intron ENSMUSG00000001441 Npepps ENSMUST00000146833 - NO_TRANSLATION retained_intron ENSMUSG00000001441 Npepps ENSMUST00000001480 ENSMUSP00000001480 TRANSLATION protein_coding - CCDS25317.1 1 920.0 12.0 21.2 6.6 618.3 0.0 -2,0 1.0 40 20.0 PRINCIPAL:1 ENSMUSG00000001441 Npepps ENSMUST00000152820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001441 Npepps ENSMUST00000171320 - NO_TRANSLATION retained_intron ENSMUSG00000001441 Npepps ENSMUST00000165216 ENSMUSP00000128169 TRANSLATION protein_coding start - 5 876.0 12.0 20.2 0.0 618.3 0.0 -4,0 0.1016 34 -2.0 MINOR ENSMUSG00000001441 Npepps ENSMUST00000163164 ENSMUSP00000129361 TRANSLATION protein_coding start/stop - 3 218.0 10.0 5.91 0.0 231.6 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000001441 Npepps ENSMUST00000167806 ENSMUSP00000130445 TRANSLATION protein_coding - - 5 674.0 12.0 16.45 0.0 331.9 0.0 -2,0 0.0033 25 6.0 MINOR ENSMUSG00000001441 Npepps ENSMUST00000170506 - NO_TRANSLATION retained_intron ENSMUSG00000001441 Npepps ENSMUST00000163950 - NO_TRANSLATION retained_intron ENSMUSG00000001441 Npepps ENSMUST00000107608 - NO_TRANSLATION retained_intron ENSMUSG00000034354 Mtmr3 ENSMUST00000144242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034354 Mtmr3 ENSMUST00000130716 ENSMUSP00000137687 TRANSLATION nonsense_mediated_decay - - 1 1075.0 7.0 4.525 0.0 461.0 0.0 -4,-5 0.0244 24 -2.0 MINOR ENSMUSG00000034354 Mtmr3 ENSMUST00000040448 ENSMUSP00000049079 TRANSLATION protein_coding - CCDS48744.1 5 1159.0 7.0 5.825 2.7 526.6 0.0 -4,-5 1.0 26 18.682 PRINCIPAL:1 ENSMUSG00000034354 Mtmr3 ENSMUST00000128256 ENSMUSP00000116315 TRANSLATION protein_coding start - 5 1167.0 7.0 5.495 1.5 509.0 0.0 -4,-5 0.2568 26 -2.0 MINOR ENSMUSG00000034354 Mtmr3 ENSMUST00000123506 ENSMUSP00000122422 TRANSLATION protein_coding start - 5 1195.0 7.0 5.985 2.7 526.6 0.0 -4,-5 0.6827 26 -2.0 MINOR ENSMUSG00000034354 Mtmr3 ENSMUST00000155566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034354 Mtmr3 ENSMUST00000109943 ENSMUSP00000105569 TRANSLATION protein_coding - CCDS48744.1 1 1159.0 7.0 5.825 2.7 526.6 0.0 -4,-5 1.0 26 18.682 PRINCIPAL:1 ENSMUSG00000075702 Selenom ENSMUST00000131865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075702 Selenom ENSMUST00000123677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075702 Selenom ENSMUST00000094469 ENSMUSP00000092041 TRANSLATION protein_coding - CCDS24365.1 1 145.0 0.0 3.55 0.0 93.7 0.0 3,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000078276 Gm14190 ENSMUST00000105073 ENSMUSP00000100694 TRANSLATION protein_coding - - - 50.0 0.0 0.0 0.0 0.0 0.0 -2,-4 0.5754 - 0.0 PRINCIPAL:1 ENSMUSG00000045140 Pigw ENSMUST00000108080 ENSMUSP00000103715 TRANSLATION protein_coding - CCDS36263.1 1 503.0 0.0 0.0 11.3 121.5 11.0 -4,-7 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000045140 Pigw ENSMUST00000067058 ENSMUSP00000064547 TRANSLATION protein_coding - CCDS36263.1 1 503.0 0.0 0.0 11.3 121.5 11.0 -4,-7 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000069818 Or1e30 ENSMUST00000215161 ENSMUSP00000148992 TRANSLATION protein_coding - CCDS25016.1 5 311.0 0.0 2.0 8.9 206.3 8.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069818 Or1e30 ENSMUST00000092919 ENSMUSP00000090598 TRANSLATION protein_coding - CCDS25016.1 - 311.0 0.0 2.0 8.9 206.3 8.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069818 Or1e30 ENSMUST00000206815 ENSMUSP00000146162 TRANSLATION protein_coding stop - 3 155.0 0.0 1.0 0.0 90.4 4.0 -3,-5 0.0037 - -2.0 MINOR ENSMUSG00000069818 Or1e30 ENSMUST00000120081 ENSMUSP00000113472 TRANSLATION protein_coding - CCDS25016.1 2 311.0 0.0 2.0 8.9 206.3 8.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108167 Or2y1c ENSMUST00000071905 ENSMUSP00000071801 TRANSLATION protein_coding - CCDS24611.1 - 309.0 0.0 1.0 10.4 167.6 6.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108167 Or2y1c ENSMUST00000204518 ENSMUSP00000145320 TRANSLATION protein_coding - CCDS24611.1 3 309.0 0.0 1.0 10.4 167.6 6.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108167 Or2y1c ENSMUST00000213674 ENSMUSP00000150448 TRANSLATION protein_coding - CCDS24611.1 5 309.0 0.0 1.0 10.4 167.6 6.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034614 Pik3ip1 ENSMUST00000136536 ENSMUSP00000122407 TRANSLATION protein_coding stop - 5 257.0 0.0 2.914 0.0 41.8 3.0 2,-3 0.1335 7 -2.0 MINOR ENSMUSG00000034614 Pik3ip1 ENSMUST00000130747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034614 Pik3ip1 ENSMUST00000139139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034614 Pik3ip1 ENSMUST00000149253 - NO_TRANSLATION retained_intron ENSMUSG00000034614 Pik3ip1 ENSMUST00000093399 ENSMUSP00000091100 TRANSLATION protein_coding - - 1 213.0 0.0 2.05 0.0 41.8 3.0 2,-3 0.0569 7 10.224 MINOR ENSMUSG00000034614 Pik3ip1 ENSMUST00000136474 ENSMUSP00000119106 TRANSLATION protein_coding stop - 2 152.0 0.0 1.45 0.0 0.0 3.0 -4,-5 0.0018 3 -2.0 MINOR ENSMUSG00000034614 Pik3ip1 ENSMUST00000142961 - NO_TRANSLATION retained_intron ENSMUSG00000034614 Pik3ip1 ENSMUST00000153733 - NO_TRANSLATION retained_intron ENSMUSG00000034614 Pik3ip1 ENSMUST00000138907 ENSMUSP00000121277 TRANSLATION protein_coding start - 3 176.0 0.0 1.45 0.0 28.3 3.0 -4,-5 0.0011 4 -2.0 MINOR ENSMUSG00000034614 Pik3ip1 ENSMUST00000045153 ENSMUSP00000036921 TRANSLATION protein_coding - CCDS24357.1 1 264.0 0.0 2.65 6.5 41.8 3.0 2,-3 1.0 7 13.454 PRINCIPAL:1 ENSMUSG00000044352 Sowaha ENSMUST00000104955 ENSMUSP00000100561 TRANSLATION protein_coding - CCDS24681.2 - 548.0 0.0 0.0 0.0 42.6 0.0 1,-3 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000050763 Or2t26 ENSMUST00000059379 ENSMUSP00000050142 TRANSLATION protein_coding - CCDS24598.1 - 317.0 0.0 1.0 7.2 171.2 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050763 Or2t26 ENSMUST00000203377 ENSMUSP00000145357 TRANSLATION protein_coding - CCDS24598.1 3 317.0 0.0 1.0 7.2 171.2 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050763 Or2t26 ENSMUST00000214195 ENSMUSP00000150679 TRANSLATION protein_coding - CCDS24598.1 5 317.0 0.0 1.0 7.2 171.2 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048981 Krt31 ENSMUST00000007318 ENSMUSP00000007318 TRANSLATION protein_coding - CCDS25405.1 1 416.0 0.0 4.35 11.1 366.3 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000001555 Fkbp10 ENSMUST00000125616 - NO_TRANSLATION retained_intron ENSMUSG00000001555 Fkbp10 ENSMUST00000134815 ENSMUSP00000123577 TRANSLATION nonsense_mediated_decay start - 5 66.0 0.0 1.0 0.0 23.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000001555 Fkbp10 ENSMUST00000139084 - NO_TRANSLATION retained_intron ENSMUSG00000001555 Fkbp10 ENSMUST00000107400 ENSMUSP00000103023 TRANSLATION protein_coding - - 5 469.0 0.0 8.0 0.0 307.2 0.0 1,1 0.0026 10 2.472 MINOR ENSMUSG00000001555 Fkbp10 ENSMUST00000001595 ENSMUSP00000001595 TRANSLATION protein_coding - CCDS25422.1 1 581.0 0.0 10.0 4.5 399.3 0.0 1,1 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000045007 Tubg2 ENSMUST00000043654 ENSMUSP00000045901 TRANSLATION protein_coding - CCDS25452.1 1 451.0 16.0 8.75 33.6 392.5 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000020679 Hnf1b ENSMUST00000135975 ENSMUSP00000117036 TRANSLATION protein_coding stop - 3 56.0 0.0 1.0 0.0 113.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020679 Hnf1b ENSMUST00000146786 ENSMUSP00000123297 TRANSLATION protein_coding stop - 3 199.0 0.0 3.0 0.0 167.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020679 Hnf1b ENSMUST00000108113 ENSMUSP00000103748 TRANSLATION protein_coding - CCDS70272.1 1 435.0 0.0 2.25 5.3 542.1 0.0 -4,-5 0.1729 2 4.222 MINOR ENSMUSG00000020679 Hnf1b ENSMUST00000021016 ENSMUSP00000021016 TRANSLATION protein_coding - CCDS25179.1 1 558.0 0.0 2.98 15.6 645.8 0.0 -4,-7 0.8846 3 14.5 MINOR ENSMUSG00000020679 Hnf1b ENSMUST00000108114 ENSMUSP00000103749 TRANSLATION protein_coding - CCDS70271.1 1 532.0 0.0 3.73 15.6 645.8 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000034586 Hid1 ENSMUST00000152977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034586 Hid1 ENSMUST00000044152 ENSMUSP00000043789 TRANSLATION protein_coding - CCDS83927.1 1 787.0 0.0 2.75 14.2 959.3 0.0 -4,-6 1.0 18 15.91 PRINCIPAL:1 ENSMUSG00000034586 Hid1 ENSMUST00000106542 ENSMUSP00000102152 TRANSLATION protein_coding - CCDS25630.1 1 788.0 0.0 2.75 10.2 960.8 0.0 -4,-6 0.9515 18 14.788 MINOR ENSMUSG00000034586 Hid1 ENSMUST00000153447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034586 Hid1 ENSMUST00000123428 ENSMUSP00000121914 TRANSLATION protein_coding start/stop - 5 273.0 0.0 0.0 0.0 264.6 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000034586 Hid1 ENSMUST00000145316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034586 Hid1 ENSMUST00000130073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034586 Hid1 ENSMUST00000146256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040158 Tax1bp3 ENSMUST00000040687 ENSMUSP00000047410 TRANSLATION protein_coding - CCDS25000.1 1 124.0 0.0 3.25 27.4 71.1 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000040158 Tax1bp3 ENSMUST00000108477 ENSMUSP00000104117 TRANSLATION protein_coding - - 5 98.0 0.0 2.5 2.9 0.0 0.0 -4,-6 0.0311 - 4.788 MINOR ENSMUSG00000040158 Tax1bp3 ENSMUST00000133922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040158 Tax1bp3 ENSMUST00000150407 - NO_TRANSLATION retained_intron ENSMUSG00000044649 Krtap4-2 ENSMUST00000058987 ENSMUSP00000056162 TRANSLATION protein_coding - CCDS25392.1 - 167.0 0.0 0.0 0.8 85.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043029 Trpv3 ENSMUST00000049676 ENSMUSP00000053755 TRANSLATION protein_coding - CCDS25004.1 1 791.0 7.0 13.0 9.9 69.5 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000017176 Nt5c3b ENSMUST00000107397 ENSMUSP00000103020 TRANSLATION protein_coding - - 1 292.0 8.0 6.83 2.1 409.6 0.0 -4,-1 0.3361 6 18.35 MINOR ENSMUSG00000017176 Nt5c3b ENSMUST00000140034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017176 Nt5c3b ENSMUST00000154692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017176 Nt5c3b ENSMUST00000135557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017176 Nt5c3b ENSMUST00000155025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017176 Nt5c3b ENSMUST00000107399 ENSMUSP00000103022 TRANSLATION protein_coding - CCDS48930.1 1 261.0 8.0 5.83 0.0 357.0 0.0 -4,-7 0.0101 5 12.846 MINOR ENSMUSG00000017176 Nt5c3b ENSMUST00000140381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017176 Nt5c3b ENSMUST00000107398 ENSMUSP00000103021 TRANSLATION protein_coding - CCDS48930.1 1 261.0 8.0 5.83 0.0 357.0 0.0 -4,-7 0.0101 5 12.846 MINOR ENSMUSG00000017176 Nt5c3b ENSMUST00000092688 ENSMUSP00000090360 TRANSLATION protein_coding - CCDS48931.1 1 300.0 8.0 6.83 7.3 409.6 0.0 -4,-7 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000017176 Nt5c3b ENSMUST00000092689 ENSMUSP00000090361 TRANSLATION protein_coding - - 1 257.0 5.0 5.75 2.7 409.6 0.0 -4,-2 0.2015 5 14.13 MINOR ENSMUSG00000017176 Nt5c3b ENSMUST00000130666 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020777 Acox1 ENSMUST00000124684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020777 Acox1 ENSMUST00000128793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020777 Acox1 ENSMUST00000130229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020777 Acox1 ENSMUST00000072948 ENSMUSP00000072717 TRANSLATION protein_coding - CCDS70354.1 1 661.0 31.0 12.9 25.1 380.2 0.0 -4,-5 0.9708 27 18.0 PRINCIPAL:3 ENSMUSG00000020777 Acox1 ENSMUST00000150549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020777 Acox1 ENSMUST00000066587 ENSMUSP00000063325 TRANSLATION protein_coding - CCDS25660.1 1 661.0 31.0 12.9 25.1 385.0 0.0 -4,-5 1.0 26 18.0 ALTERNATIVE:1 ENSMUSG00000020777 Acox1 ENSMUST00000148601 ENSMUSP00000122185 TRANSLATION protein_coding start - 2 625.0 31.0 10.9 0.0 304.7 0.0 -4,-7 0.0046 23 -2.0 MINOR ENSMUSG00000020176 Grb10 ENSMUST00000143915 ENSMUSP00000115160 TRANSLATION protein_coding stop - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020176 Grb10 ENSMUST00000093321 ENSMUSP00000091011 TRANSLATION protein_coding - CCDS24440.1 1 596.0 0.0 9.698 0.1 225.4 0.0 -4,-5 0.9521 7 8.0 PRINCIPAL:2 ENSMUSG00000020176 Grb10 ENSMUST00000150972 ENSMUSP00000119344 TRANSLATION protein_coding stop - 5 116.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020176 Grb10 ENSMUST00000109653 ENSMUSP00000105280 TRANSLATION protein_coding - - 5 550.0 0.0 8.698 0.0 189.7 0.0 -4,-5 0.0032 7 5.602 MINOR ENSMUSG00000020176 Grb10 ENSMUST00000124587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020176 Grb10 ENSMUST00000148254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020176 Grb10 ENSMUST00000143386 ENSMUSP00000118350 TRANSLATION protein_coding stop - 3 171.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020176 Grb10 ENSMUST00000142877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020176 Grb10 ENSMUST00000109654 ENSMUSP00000105281 TRANSLATION protein_coding - CCDS48754.1 1 541.0 0.0 9.698 0.7 226.7 0.0 -4,-5 0.2464 6 8.0 ALTERNATIVE:2 ENSMUSG00000032985 5730522E02Rik ENSMUST00000144503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032985 5730522E02Rik ENSMUST00000135168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032985 5730522E02Rik ENSMUST00000144841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032985 5730522E02Rik ENSMUST00000125987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032985 5730522E02Rik ENSMUST00000153834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032985 5730522E02Rik ENSMUST00000125773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032985 5730522E02Rik ENSMUST00000179180 ENSMUSP00000137096 TRANSLATION protein_coding start/stop - 5 150.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0294 - -2.0 MINOR ENSMUSG00000032985 5730522E02Rik ENSMUST00000109511 ENSMUSP00000105137 TRANSLATION protein_coding - - 1 163.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5818 - 0.0 PRINCIPAL:1 ENSMUSG00000048217 Nags ENSMUST00000129799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048217 Nags ENSMUST00000055409 ENSMUSP00000050258 TRANSLATION protein_coding - CCDS25488.1 1 527.0 5.0 4.3 4.1 161.4 0.0 -2,2 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000048217 Nags ENSMUST00000147252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020794 Ube2g1 ENSMUST00000138247 ENSMUSP00000117588 TRANSLATION protein_coding - - 1 99.0 0.0 2.25 0.0 88.4 0.0 -4,-5 0.0159 3 2.46 MINOR ENSMUSG00000020794 Ube2g1 ENSMUST00000126046 - NO_TRANSLATION retained_intron ENSMUSG00000020794 Ube2g1 ENSMUST00000021148 ENSMUSP00000021148 TRANSLATION protein_coding - CCDS36217.1 1 170.0 0.0 4.5 31.9 172.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000078257 2300003K06Rik ENSMUST00000105054 ENSMUSP00000100675 TRANSLATION protein_coding - CCDS70307.1 - 262.0 0.0 0.0 0.0 80.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000057522 Spop ENSMUST00000150884 ENSMUSP00000119650 TRANSLATION protein_coding stop - 3 94.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000057522 Spop ENSMUST00000107724 ENSMUSP00000103352 TRANSLATION protein_coding - CCDS36286.1 1 374.0 0.0 8.08 34.9 142.7 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000057522 Spop ENSMUST00000107722 ENSMUSP00000103350 TRANSLATION protein_coding - CCDS36286.1 1 374.0 0.0 8.08 34.9 142.7 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000057522 Spop ENSMUST00000150922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057522 Spop ENSMUST00000127713 ENSMUSP00000118922 TRANSLATION protein_coding stop - 3 76.0 0.0 1.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000069911 Insyn2b ENSMUST00000165963 ENSMUSP00000129183 TRANSLATION protein_coding - CCDS36127.1 5 535.0 0.0 1.35 9.6 557.8 0.0 -4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004018 Fancl ENSMUST00000134445 ENSMUSP00000119873 TRANSLATION protein_coding start - 3 145.0 6.0 3.0 0.0 131.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004018 Fancl ENSMUST00000136830 ENSMUSP00000117073 TRANSLATION protein_coding stop - 3 123.0 0.0 3.35 0.0 61.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004018 Fancl ENSMUST00000109509 ENSMUSP00000105135 TRANSLATION protein_coding - CCDS70152.1 1 370.0 8.0 10.43 18.9 434.9 0.0 -4,-5 0.8882 - 20.524 MINOR ENSMUSG00000004018 Fancl ENSMUST00000004120 ENSMUSP00000004120 TRANSLATION protein_coding - CCDS24485.1 1 375.0 8.0 10.43 18.9 459.5 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000004018 Fancl ENSMUST00000143471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025572 Tmc6 ENSMUST00000131606 ENSMUSP00000123264 TRANSLATION nonsense_mediated_decay - - 1 152.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000025572 Tmc6 ENSMUST00000143406 ENSMUSP00000117566 TRANSLATION protein_coding stop - 5 253.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 1 -2.0 MINOR ENSMUSG00000025572 Tmc6 ENSMUST00000026659 ENSMUSP00000026659 TRANSLATION protein_coding - CCDS25687.1 1 810.0 0.0 0.0 0.0 127.6 6.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000025572 Tmc6 ENSMUST00000149589 ENSMUSP00000116521 TRANSLATION nonsense_mediated_decay start - 3 111.0 0.0 0.0 0.0 36.0 2.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025572 Tmc6 ENSMUST00000152304 ENSMUSP00000122495 TRANSLATION protein_coding stop - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025572 Tmc6 ENSMUST00000103025 - NO_TRANSLATION retained_intron ENSMUSG00000025572 Tmc6 ENSMUST00000148220 - NO_TRANSLATION retained_intron ENSMUSG00000025572 Tmc6 ENSMUST00000127227 ENSMUSP00000116613 TRANSLATION protein_coding stop - 3 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0221 - -2.0 MINOR ENSMUSG00000025572 Tmc6 ENSMUST00000136729 ENSMUSP00000118068 TRANSLATION protein_coding stop - 2 77.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000093938 Evi2b ENSMUST00000179322 ENSMUSP00000136153 TRANSLATION protein_coding - CCDS25121.1 1 444.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 1 0.0 PRINCIPAL:1 ENSMUSG00000069844 Sco1 ENSMUST00000092996 ENSMUSP00000090673 TRANSLATION protein_coding - CCDS36183.1 1 284.0 7.0 5.0 0.4 28.5 1.0 -4,0 0.4573 3 14.0 ALTERNATIVE:2 ENSMUSG00000069844 Sco1 ENSMUST00000108690 ENSMUSP00000104330 TRANSLATION protein_coding - - 1 289.0 7.0 5.0 0.4 28.5 1.0 -4,0 0.7446 3 14.0 PRINCIPAL:2 ENSMUSG00000069844 Sco1 ENSMUST00000136984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069844 Sco1 ENSMUST00000137779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017686 Rhot1 ENSMUST00000134148 - NO_TRANSLATION retained_intron ENSMUSG00000017686 Rhot1 ENSMUST00000151518 - NO_TRANSLATION retained_intron ENSMUSG00000017686 Rhot1 ENSMUST00000092857 ENSMUSP00000090533 TRANSLATION protein_coding - CCDS25130.1 1 631.0 29.0 15.45 8.4 315.9 2.0 -4,-2 0.9465 15 16.676 ALTERNATIVE:1 ENSMUSG00000017686 Rhot1 ENSMUST00000237515 ENSMUSP00000158504 TRANSLATION protein_coding start - - 214.0 5.0 1.0 0.0 0.0 2.0 -4,-5 0.0023 6 -2.0 MINOR ENSMUSG00000017686 Rhot1 ENSMUST00000135947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017686 Rhot1 ENSMUST00000154362 - NO_TRANSLATION retained_intron ENSMUSG00000017686 Rhot1 ENSMUST00000055056 ENSMUSP00000057669 TRANSLATION protein_coding - CCDS48862.1 1 672.0 29.0 15.45 8.4 315.0 2.0 -4,-2 1.0 16 16.676 ALTERNATIVE:1 ENSMUSG00000017686 Rhot1 ENSMUST00000017831 ENSMUSP00000017831 TRANSLATION protein_coding - CCDS48861.1 1 663.0 29.0 15.45 7.2 315.9 2.0 -4,-2 0.8795 15 16.241 ALTERNATIVE:1 ENSMUSG00000017686 Rhot1 ENSMUST00000134894 ENSMUSP00000117941 TRANSLATION protein_coding start - 1 434.0 17.0 8.75 0.0 237.2 2.0 -4,-5 0.0008 12 -2.0 MINOR ENSMUSG00000017686 Rhot1 ENSMUST00000236882 - NO_TRANSLATION retained_intron ENSMUSG00000017686 Rhot1 ENSMUST00000077451 ENSMUSP00000076664 TRANSLATION protein_coding - - 5 704.0 29.0 15.45 9.3 315.0 2.0 -4,-2 0.8988 17 17.0 PRINCIPAL:3 ENSMUSG00000020709 Adap2 ENSMUST00000021050 ENSMUSP00000021050 TRANSLATION protein_coding - CCDS25128.1 1 381.0 6.0 9.0 11.2 183.3 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000020709 Adap2 ENSMUST00000134118 ENSMUSP00000130731 TRANSLATION nonsense_mediated_decay - - 2 133.0 6.0 3.75 0.0 114.0 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000005951 Shpk ENSMUST00000131927 ENSMUSP00000123639 TRANSLATION nonsense_mediated_decay - - 1 138.0 0.0 2.0 0.0 44.7 0.0 -2,-4 0.0 3 -2.0 MINOR ENSMUSG00000005951 Shpk ENSMUST00000006105 ENSMUSP00000006105 TRANSLATION protein_coding - CCDS25002.1 1 476.0 0.0 7.0 9.1 80.5 0.0 -2,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000020807 4933427D14Rik ENSMUST00000238653 ENSMUSP00000158687 TRANSLATION protein_coding - CCDS24979.1 - 959.0 0.0 0.0 0.1 1641.8 0.0 -4,-6 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000020807 4933427D14Rik ENSMUST00000142530 ENSMUSP00000115276 TRANSLATION nonsense_mediated_decay - - 1 366.0 0.0 0.0 0.0 680.9 0.0 -4,-6 0.046 2 -2.0 MINOR ENSMUSG00000020807 4933427D14Rik ENSMUST00000151411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020807 4933427D14Rik ENSMUST00000156696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020807 4933427D14Rik ENSMUST00000144553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020807 4933427D14Rik ENSMUST00000131546 ENSMUSP00000122273 TRANSLATION nonsense_mediated_decay - - 1 661.0 0.0 0.0 0.0 1107.9 0.0 -4,-6 0.0858 3 -2.0 MINOR ENSMUSG00000020807 4933427D14Rik ENSMUST00000154093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020807 4933427D14Rik ENSMUST00000108505 ENSMUSP00000104145 TRANSLATION protein_coding - - 1 309.0 0.0 0.0 0.0 455.2 0.0 -4,-6 0.0019 1 0.0 MINOR ENSMUSG00000043419 Rnf227 ENSMUST00000129321 ENSMUSP00000146712 TRANSLATION protein_coding - - 1 190.0 8.0 0.165 9.1 173.6 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000043419 Rnf227 ENSMUST00000218008 ENSMUSP00000151352 TRANSLATION protein_coding - - 1 74.0 0.0 0.0 0.0 139.6 0.0 -4,-5 0.0014 - 3.96 MINOR ENSMUSG00000043419 Rnf227 ENSMUST00000151617 ENSMUSP00000147159 TRANSLATION protein_coding - - 3 48.0 0.0 0.0 0.0 32.2 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000060923 Acyp2 ENSMUST00000074613 ENSMUSP00000074195 TRANSLATION protein_coding - CCDS24507.1 1 106.0 8.0 2.75 0.0 84.0 0.0 -4,-6 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000020841 Cpd ENSMUST00000132796 - NO_TRANSLATION retained_intron ENSMUSG00000020841 Cpd ENSMUST00000151584 - NO_TRANSLATION retained_intron ENSMUSG00000020841 Cpd ENSMUST00000021201 ENSMUSP00000021201 TRANSLATION protein_coding - CCDS25071.1 1 1377.0 15.0 10.352 4.5 867.8 0.0 2,-3 1.0 22 20.0 PRINCIPAL:1 ENSMUSG00000020475 Pgam2 ENSMUST00000020768 ENSMUSP00000020768 TRANSLATION protein_coding - CCDS24404.1 1 253.0 14.0 3.0 36.9 0.0 0.0 -4,-6 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000078921 Tgtp2 ENSMUST00000046745 ENSMUSP00000045025 TRANSLATION protein_coding - CCDS48781.1 1 415.0 13.0 0.8 0.3 585.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078921 Tgtp2 ENSMUST00000128411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025792 Slc25a10 ENSMUST00000144706 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025792 Slc25a10 ENSMUST00000138874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025792 Slc25a10 ENSMUST00000123373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025792 Slc25a10 ENSMUST00000026899 ENSMUSP00000026899 TRANSLATION protein_coding - CCDS25738.1 1 287.0 0.0 6.85 25.1 183.2 0.0 -3,-6 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000025792 Slc25a10 ENSMUST00000127349 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025792 Slc25a10 ENSMUST00000152187 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020877 Scrn2 ENSMUST00000021249 ENSMUSP00000021249 TRANSLATION protein_coding - CCDS25310.1 1 425.0 0.0 7.0 10.2 0.0 0.0 -4,-5 1.0 15 9.0 PRINCIPAL:1 ENSMUSG00000020877 Scrn2 ENSMUST00000133054 - NO_TRANSLATION retained_intron ENSMUSG00000020877 Scrn2 ENSMUST00000126874 - NO_TRANSLATION retained_intron ENSMUSG00000020877 Scrn2 ENSMUST00000153482 ENSMUSP00000116606 TRANSLATION protein_coding stop - 3 181.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0011 5 -2.0 MINOR ENSMUSG00000056895 H2bc27 ENSMUST00000078267 ENSMUSP00000076397 TRANSLATION protein_coding - CCDS24754.1 - 126.0 0.0 1.0 12.5 89.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069792 Wfdc17 ENSMUST00000092836 ENSMUSP00000090511 TRANSLATION protein_coding - CCDS36257.1 1 76.0 0.0 1.75 0.4 45.9 0.0 1,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000020829 Slc46a1 ENSMUST00000001126 ENSMUSP00000001126 TRANSLATION protein_coding - CCDS25104.1 1 459.0 0.0 1.98 5.3 51.0 0.0 -4,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000020829 Slc46a1 ENSMUST00000180786 - NO_TRANSLATION retained_intron ENSMUSG00000020829 Slc46a1 ENSMUST00000146431 ENSMUSP00000119800 TRANSLATION nonsense_mediated_decay - - 3 98.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020623 Map2k6 ENSMUST00000133920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020623 Map2k6 ENSMUST00000146540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020623 Map2k6 ENSMUST00000100260 ENSMUSP00000097831 TRANSLATION protein_coding - - 1 293.0 19.0 6.35 0.0 160.8 0.0 -4,-5 0.0002 10 13.776 MINOR ENSMUSG00000020623 Map2k6 ENSMUST00000146084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020623 Map2k6 ENSMUST00000020949 ENSMUSP00000020949 TRANSLATION protein_coding - CCDS25592.1 1 334.0 19.0 7.6 26.2 189.5 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000020481 Ankrd36 ENSMUST00000118112 ENSMUSP00000122397 TRANSLATION protein_coding stop - 5 1261.0 0.0 5.1 0.0 86.7 0.0 -4,-7 0.3954 3 -2.0 MINOR ENSMUSG00000020481 Ankrd36 ENSMUST00000146773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020481 Ankrd36 ENSMUST00000109855 ENSMUSP00000105481 TRANSLATION protein_coding - - 1 300.0 0.0 5.1 0.0 89.4 0.0 -4,-7 0.7389 - 8.0 ALTERNATIVE:2 ENSMUSG00000020481 Ankrd36 ENSMUST00000137933 ENSMUSP00000120499 TRANSLATION protein_coding start - 1 498.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0056 3 -2.0 MINOR ENSMUSG00000020481 Ankrd36 ENSMUST00000109856 ENSMUSP00000105482 TRANSLATION protein_coding - CCDS36103.1 2 1415.0 0.0 5.1 0.0 89.4 0.0 -4,-7 0.8797 3 8.0 PRINCIPAL:3 ENSMUSG00000020541 Tom1l1 ENSMUST00000127034 - NO_TRANSLATION retained_intron ENSMUSG00000020541 Tom1l1 ENSMUST00000107868 ENSMUSP00000103500 TRANSLATION protein_coding - CCDS36280.1 1 397.0 0.0 4.048 3.2 94.0 0.0 -4,-5 0.0822 6 4.176 MINOR ENSMUSG00000020541 Tom1l1 ENSMUST00000107869 ENSMUSP00000103501 TRANSLATION protein_coding - - 1 398.0 0.0 5.298 0.0 149.8 0.0 -4,-5 0.0023 3 9.084 MINOR ENSMUSG00000020541 Tom1l1 ENSMUST00000154599 ENSMUSP00000123329 TRANSLATION protein_coding stop - 3 191.0 0.0 4.25 0.0 103.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020541 Tom1l1 ENSMUST00000147329 - NO_TRANSLATION retained_intron ENSMUSG00000020541 Tom1l1 ENSMUST00000020849 ENSMUSP00000020849 TRANSLATION protein_coding - - 1 474.0 0.0 6.298 8.0 165.1 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000020541 Tom1l1 ENSMUST00000131055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020541 Tom1l1 ENSMUST00000107867 ENSMUSP00000103499 TRANSLATION protein_coding - - 1 227.0 0.0 0.8 0.1 34.5 0.0 -4,-5 0.0003 - 0.0 MINOR ENSMUSG00000054517 Trim65 ENSMUST00000106440 ENSMUSP00000102048 TRANSLATION protein_coding - - 5 396.0 12.0 3.9 0.0 39.2 0.0 -4,-5 0.0 9 13.818 MINOR ENSMUSG00000054517 Trim65 ENSMUST00000067632 ENSMUSP00000063410 TRANSLATION protein_coding - CCDS48981.1 1 522.0 12.0 4.57 2.7 74.5 0.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000054517 Trim65 ENSMUST00000154061 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035575 Utp6 ENSMUST00000108241 ENSMUSP00000103876 TRANSLATION protein_coding - CCDS25124.1 1 597.0 0.0 2.94375 30.1 88.6 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000035575 Utp6 ENSMUST00000131921 - NO_TRANSLATION retained_intron ENSMUSG00000035575 Utp6 ENSMUST00000043152 ENSMUSP00000046643 TRANSLATION protein_coding - CCDS25124.1 1 597.0 0.0 2.94375 30.1 88.6 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000035575 Utp6 ENSMUST00000146127 - NO_TRANSLATION retained_intron ENSMUSG00000038057 Dbil5 ENSMUST00000040806 ENSMUSP00000039763 TRANSLATION protein_coding - CCDS25062.1 1 87.0 8.0 1.0 30.9 81.5 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000020872 Tac4 ENSMUST00000021242 ENSMUSP00000021242 TRANSLATION protein_coding - CCDS25274.1 1 128.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.9495 - 0.0 PRINCIPAL:1 ENSMUSG00000020801 Med31 ENSMUST00000129264 - NO_TRANSLATION retained_intron ENSMUSG00000020801 Med31 ENSMUST00000021157 ENSMUSP00000021157 TRANSLATION protein_coding - CCDS24981.1 1 131.0 0.0 2.75 14.4 136.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000017677 Wsb1 ENSMUST00000137890 - NO_TRANSLATION retained_intron ENSMUSG00000017677 Wsb1 ENSMUST00000131848 ENSMUSP00000128181 TRANSLATION nonsense_mediated_decay - - 3 78.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000017677 Wsb1 ENSMUST00000131818 ENSMUSP00000131290 TRANSLATION nonsense_mediated_decay start - 5 175.0 0.0 2.827 0.0 43.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000017677 Wsb1 ENSMUST00000153585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017677 Wsb1 ENSMUST00000145772 ENSMUSP00000137999 TRANSLATION nonsense_mediated_decay - - 3 74.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000017677 Wsb1 ENSMUST00000017821 ENSMUSP00000017821 TRANSLATION protein_coding - CCDS25118.1 1 421.0 0.0 4.762 24.1 150.3 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000017677 Wsb1 ENSMUST00000150416 - NO_TRANSLATION retained_intron ENSMUSG00000020745 Pafah1b1 ENSMUST00000155493 ENSMUSP00000118231 TRANSLATION protein_coding stop - 2 97.0 0.0 2.43 0.0 36.7 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000020745 Pafah1b1 ENSMUST00000156794 - NO_TRANSLATION retained_intron ENSMUSG00000020745 Pafah1b1 ENSMUST00000021091 ENSMUSP00000021091 TRANSLATION protein_coding - CCDS25035.1 1 410.0 0.0 8.78 0.0 250.9 0.0 -4,-7 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000020745 Pafah1b1 ENSMUST00000126341 - NO_TRANSLATION retained_intron ENSMUSG00000020745 Pafah1b1 ENSMUST00000102520 ENSMUSP00000099578 TRANSLATION protein_coding - CCDS25035.1 1 410.0 0.0 8.78 0.0 250.9 0.0 -4,-7 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000107877 4933427D14Rik ENSMUST00000108506 ENSMUSP00000104146 TRANSLATION protein_coding - CCDS24979.1 1 959.0 0.0 0.0 0.1 1641.8 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000107877 4933427D14Rik ENSMUST00000204457 ENSMUSP00000144817 TRANSLATION protein_coding - - - 962.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.1127 10 0.0 MINOR ENSMUSG00000037573 Tob1 ENSMUST00000041589 ENSMUSP00000036039 TRANSLATION protein_coding - CCDS25250.1 1 362.0 0.0 0.6 0.8 128.8 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000020803 Txndc17 ENSMUST00000128648 - NO_TRANSLATION retained_intron ENSMUSG00000020803 Txndc17 ENSMUST00000021158 ENSMUSP00000021158 TRANSLATION protein_coding - CCDS24980.1 1 123.0 11.0 3.25 28.2 172.2 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000020940 Efcab15 ENSMUST00000174567 ENSMUSP00000134292 TRANSLATION protein_coding stop - 5 196.0 3.0 1.2 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020940 Efcab15 ENSMUST00000021323 ENSMUSP00000021323 TRANSLATION protein_coding - CCDS56814.1 5 382.0 3.0 1.5 1.1 41.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020940 Efcab15 ENSMUST00000172850 ENSMUSP00000139837 TRANSLATION nonsense_mediated_decay - - 5 191.0 3.0 1.5 0.0 41.0 0.0 -4,-5 0.0478 - -2.0 MINOR ENSMUSG00000020940 Efcab15 ENSMUST00000140559 - NO_TRANSLATION retained_intron ENSMUSG00000017311 Pyy ENSMUST00000177304 ENSMUSP00000135292 TRANSLATION protein_coding - CCDS83905.1 2 100.0 0.0 1.15 25.6 71.6 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000017311 Pyy ENSMUST00000017455 ENSMUSP00000017455 TRANSLATION protein_coding - CCDS36339.1 1 98.0 0.0 1.15 9.9 71.6 0.0 4,-1 0.657 1 13.448 MINOR ENSMUSG00000017311 Pyy ENSMUST00000177149 - NO_TRANSLATION retained_intron ENSMUSG00000017311 Pyy ENSMUST00000127381 ENSMUSP00000134812 TRANSLATION protein_coding - CCDS83905.1 2 100.0 0.0 1.15 25.6 71.6 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000070332 Trim80 ENSMUST00000093914 ENSMUSP00000091442 TRANSLATION protein_coding - CCDS36372.1 1 624.0 12.0 2.105 0.3 115.9 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039364 Sectm1b ENSMUST00000081499 ENSMUSP00000080217 TRANSLATION protein_coding - CCDS25765.1 5 212.0 0.0 1.0 0.0 0.0 1.0 4,-1 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000039364 Sectm1b ENSMUST00000039309 ENSMUSP00000045748 TRANSLATION protein_coding - CCDS25765.1 1 212.0 0.0 1.0 0.0 0.0 1.0 4,-1 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000039364 Sectm1b ENSMUST00000132117 - NO_TRANSLATION retained_intron ENSMUSG00000039364 Sectm1b ENSMUST00000150577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039364 Sectm1b ENSMUST00000168459 ENSMUSP00000125965 TRANSLATION protein_coding - CCDS25765.1 1 212.0 0.0 1.0 0.0 0.0 1.0 4,-1 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000039364 Sectm1b ENSMUST00000130786 ENSMUSP00000116010 TRANSLATION protein_coding stop - 1 185.0 0.0 1.0 0.0 0.0 1.0 4,-1 0.1776 2 -2.0 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000092821 ENSMUSP00000090496 TRANSLATION protein_coding - CCDS48873.1 1 913.0 0.0 0.5 4.5 96.5 0.0 -4,-7 1.0 21 9.59 PRINCIPAL:1 ENSMUSG00000059439 Bcas3 ENSMUST00000145281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059439 Bcas3 ENSMUST00000140215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059439 Bcas3 ENSMUST00000074875 ENSMUSP00000074416 TRANSLATION protein_coding - CCDS25195.1 5 928.0 0.0 0.5 5.4 90.2 0.0 -4,-7 0.9081 22 8.0 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000144276 ENSMUSP00000114415 TRANSLATION protein_coding start - 3 165.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0347 3 -2.0 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000154396 ENSMUSP00000122154 TRANSLATION protein_coding start - 5 693.0 0.0 0.5 0.0 96.5 0.0 -4,-7 0.0717 17 -2.0 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000130343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059439 Bcas3 ENSMUST00000108061 ENSMUSP00000103696 TRANSLATION protein_coding - - 5 943.0 0.0 0.5 3.5 90.2 0.0 -4,-7 0.5494 20 7.136 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000138423 ENSMUSP00000117559 TRANSLATION protein_coding stop - 5 120.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000092822 ENSMUSP00000090497 TRANSLATION protein_coding start - 5 458.0 0.0 0.0 0.0 96.5 0.0 -4,-7 0.0466 9 -2.0 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000142596 ENSMUSP00000122571 TRANSLATION protein_coding start - 5 477.0 0.0 0.0 0.0 90.2 0.0 -4,-7 0.0199 10 -2.0 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000133194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059439 Bcas3 ENSMUST00000108062 ENSMUSP00000103697 TRANSLATION protein_coding - - 5 943.0 0.0 0.5 3.5 90.2 0.0 -4,-7 0.5494 20 7.136 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000149662 ENSMUSP00000120891 TRANSLATION protein_coding start - 1 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000108056 ENSMUSP00000103691 TRANSLATION protein_coding - - 1 527.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0351 11 6.0 MINOR ENSMUSG00000059439 Bcas3 ENSMUST00000140562 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051043 Gprc5c ENSMUST00000152314 ENSMUSP00000118667 TRANSLATION protein_coding start - 5 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000051043 Gprc5c ENSMUST00000142262 ENSMUSP00000121524 TRANSLATION protein_coding stop - 5 133.0 0.0 1.664 0.0 34.1 7.0 4,-1 0.0033 - -2.0 MINOR ENSMUSG00000051043 Gprc5c ENSMUST00000122967 ENSMUSP00000114335 TRANSLATION protein_coding - - 5 104.0 0.0 0.664 0.0 0.0 5.0 4,-1 0.0057 - 1.71 MINOR ENSMUSG00000051043 Gprc5c ENSMUST00000021071 ENSMUSP00000021071 TRANSLATION protein_coding - CCDS25612.1 1 440.0 0.0 2.328 6.0 110.9 15.0 4,-1 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000051043 Gprc5c ENSMUST00000136785 ENSMUSP00000116786 TRANSLATION protein_coding stop - 3 283.0 0.0 1.928 0.0 99.3 14.0 4,-1 0.0155 - -2.0 MINOR ENSMUSG00000051043 Gprc5c ENSMUST00000133245 ENSMUSP00000121572 TRANSLATION protein_coding stop - 3 78.0 0.0 0.0 0.0 0.0 5.0 4,-1 0.0061 - -2.0 MINOR ENSMUSG00000051043 Gprc5c ENSMUST00000177952 ENSMUSP00000136702 TRANSLATION protein_coding - CCDS25612.1 1 440.0 0.0 2.328 6.0 110.9 15.0 4,-1 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000051043 Gprc5c ENSMUST00000053361 ENSMUSP00000061760 TRANSLATION protein_coding - CCDS48978.1 1 441.0 0.0 2.328 5.3 110.9 15.0 4,-1 0.9877 5 9.72 ALTERNATIVE:1 ENSMUSG00000070331 Qrich2 ENSMUST00000093909 ENSMUSP00000091437 TRANSLATION protein_coding - CCDS25667.1 1 592.0 0.0 1.375 0.0 227.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000070331 Qrich2 ENSMUST00000134182 - NO_TRANSLATION retained_intron ENSMUSG00000070331 Qrich2 ENSMUST00000208602 ENSMUSP00000147009 TRANSLATION protein_coding - - 5 2337.0 0.0 1.375 0.0 227.0 0.0 -4,-7 0.4658 6 8.0 ALTERNATIVE:2 ENSMUSG00000070331 Qrich2 ENSMUST00000140697 - NO_TRANSLATION retained_intron ENSMUSG00000039208 Metrnl ENSMUST00000125580 ENSMUSP00000122949 TRANSLATION protein_coding start/stop - 1 217.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0364 3 -2.0 MINOR ENSMUSG00000039208 Metrnl ENSMUST00000036742 ENSMUSP00000038126 TRANSLATION protein_coding - CCDS25781.1 1 311.0 0.0 0.0 4.2 0.0 0.0 1,2 0.7518 3 1.6 ALTERNATIVE:2 ENSMUSG00000039208 Metrnl ENSMUST00000106089 ENSMUSP00000101695 TRANSLATION protein_coding - - 5 229.0 0.0 0.0 5.0 0.0 0.0 -4,-7 1.0 3 2.0 PRINCIPAL:4 ENSMUSG00000050106 Tmc8 ENSMUST00000106334 ENSMUSP00000101941 TRANSLATION protein_coding - CCDS56824.1 1 723.0 0.0 0.0 1.8 134.9 9.0 -4,-7 0.9978 6 3.0 PRINCIPAL:3 ENSMUSG00000050106 Tmc8 ENSMUST00000050874 ENSMUSP00000051878 TRANSLATION protein_coding - CCDS25689.1 1 722.0 0.0 0.0 1.8 134.9 9.0 -4,-7 1.0 5 3.0 ALTERNATIVE:2 ENSMUSG00000050106 Tmc8 ENSMUST00000156458 - NO_TRANSLATION retained_intron ENSMUSG00000050106 Tmc8 ENSMUST00000127080 ENSMUSP00000115270 TRANSLATION protein_coding stop - 3 166.0 0.0 0.0 0.0 0.0 3.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000050106 Tmc8 ENSMUST00000117781 ENSMUSP00000113570 TRANSLATION protein_coding - CCDS56825.1 1 722.0 0.0 0.0 1.8 134.9 9.0 -4,-7 1.0 5 3.0 ALTERNATIVE:2 ENSMUSG00000050106 Tmc8 ENSMUST00000119455 ENSMUSP00000113628 TRANSLATION protein_coding - CCDS56824.1 1 723.0 0.0 0.0 1.8 134.9 9.0 -4,-7 0.9978 6 3.0 PRINCIPAL:3 ENSMUSG00000049809 Krtap9-3 ENSMUST00000062683 ENSMUSP00000057445 TRANSLATION protein_coding - CCDS36311.1 - 136.0 0.0 0.0 0.3 136.6 0.0 -3,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038352 Arl5c ENSMUST00000042971 ENSMUSP00000037214 TRANSLATION protein_coding - CCDS25334.1 1 179.0 17.0 4.4 34.9 204.2 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000038352 Arl5c ENSMUST00000107563 ENSMUSP00000103188 TRANSLATION protein_coding - - 1 98.0 10.0 2.15 0.0 95.0 0.0 -4,-7 0.0 - 2.832 MINOR ENSMUSG00000046010 Zfp830 ENSMUST00000056677 ENSMUSP00000056154 TRANSLATION protein_coding - CCDS25146.1 - 363.0 4.0 0.0 5.1 0.0 0.0 -4,-2 0.9858 7 6.0 PRINCIPAL:1 ENSMUSG00000064224 Gsdma3 ENSMUST00000107508 ENSMUSP00000103132 TRANSLATION protein_coding - - 5 455.0 0.0 8.15 0.0 428.3 0.0 -4,-5 0.0897 - 5.826 MINOR ENSMUSG00000064224 Gsdma3 ENSMUST00000073295 ENSMUSP00000073022 TRANSLATION protein_coding - CCDS25356.1 1 464.0 0.0 8.23712 0.0 433.3 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000040528 Milr1 ENSMUST00000106794 ENSMUSP00000102406 TRANSLATION protein_coding - CCDS70334.1 1 245.0 0.0 0.0 0.3 30.5 2.0 -4,-7 0.5616 1 2.0 ALTERNATIVE:2 ENSMUSG00000040528 Milr1 ENSMUST00000086353 ENSMUSP00000083538 TRANSLATION protein_coding - CCDS25560.1 1 246.0 0.0 0.0 0.3 30.5 2.0 -4,-7 1.0 1 2.0 PRINCIPAL:4 ENSMUSG00000040528 Milr1 ENSMUST00000182896 ENSMUSP00000138617 TRANSLATION protein_coding - CCDS70333.1 1 246.0 0.0 0.0 0.0 30.5 0.0 -4,-7 0.999 - 2.0 ALTERNATIVE:2 ENSMUSG00000040528 Milr1 ENSMUST00000182023 ENSMUSP00000138286 TRANSLATION nonsense_mediated_decay - - 2 178.0 0.0 0.0 0.0 30.5 0.0 -4,-7 0.0466 - -2.0 MINOR ENSMUSG00000040528 Milr1 ENSMUST00000182479 ENSMUSP00000138386 TRANSLATION protein_coding start - 5 143.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0069 1 -2.0 MINOR ENSMUSG00000040528 Milr1 ENSMUST00000147326 ENSMUSP00000138742 TRANSLATION protein_coding - CCDS25560.1 5 246.0 0.0 0.0 0.3 30.5 2.0 -4,-7 1.0 1 2.0 PRINCIPAL:4 ENSMUSG00000040528 Milr1 ENSMUST00000182908 ENSMUSP00000138678 TRANSLATION protein_coding - CCDS70335.1 1 208.0 0.0 0.0 0.3 30.5 0.0 -4,-7 0.2261 1 2.0 ALTERNATIVE:2 ENSMUSG00000040528 Milr1 ENSMUST00000183111 ENSMUSP00000138513 TRANSLATION protein_coding - CCDS70335.1 1 208.0 0.0 0.0 0.3 30.5 0.0 -4,-7 0.2261 1 2.0 ALTERNATIVE:2 ENSMUSG00000020261 Slc36a1 ENSMUST00000020499 ENSMUSP00000020499 TRANSLATION protein_coding - CCDS36156.1 1 475.0 0.0 6.49 20.7 253.4 10.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020261 Slc36a1 ENSMUST00000152336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020261 Slc36a1 ENSMUST00000108872 ENSMUSP00000104500 TRANSLATION protein_coding - CCDS36156.1 5 475.0 0.0 6.49 20.7 253.4 10.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020261 Slc36a1 ENSMUST00000108867 ENSMUSP00000104495 TRANSLATION protein_coding - CCDS36156.1 1 475.0 0.0 6.49 20.7 253.4 10.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020261 Slc36a1 ENSMUST00000147506 ENSMUSP00000121398 TRANSLATION protein_coding stop - 5 164.0 0.0 3.05 0.0 77.2 4.0 -4,-5 0.0037 2 -2.0 MINOR ENSMUSG00000001054 Rmnd5b ENSMUST00000132854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001054 Rmnd5b ENSMUST00000136020 ENSMUSP00000120636 TRANSLATION nonsense_mediated_decay - - 5 242.0 0.0 5.0 0.0 57.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001054 Rmnd5b ENSMUST00000001081 ENSMUSP00000001081 TRANSLATION protein_coding - CCDS24656.1 1 393.0 4.0 8.83 35.8 139.4 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000001054 Rmnd5b ENSMUST00000147009 ENSMUSP00000118594 TRANSLATION protein_coding start - 3 185.0 4.0 3.08 0.0 58.3 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000017453 Pipox ENSMUST00000017597 ENSMUSP00000017597 TRANSLATION protein_coding - CCDS25086.1 1 390.0 35.0 6.39 13.6 168.5 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000017453 Pipox ENSMUST00000155401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017453 Pipox ENSMUST00000151383 - NO_TRANSLATION retained_intron ENSMUSG00000060787 Or4d1 ENSMUST00000216461 ENSMUSP00000149777 TRANSLATION protein_coding - CCDS25223.1 5 313.0 0.0 1.0 0.0 142.9 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060787 Or4d1 ENSMUST00000217112 ENSMUSP00000149264 TRANSLATION protein_coding - CCDS25223.1 5 313.0 0.0 1.0 0.0 142.9 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060787 Or4d1 ENSMUST00000215062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060787 Or4d1 ENSMUST00000074874 ENSMUSP00000074415 TRANSLATION protein_coding - CCDS25223.1 - 313.0 0.0 1.0 0.0 142.9 5.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060787 Or4d1 ENSMUST00000214754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001029 Icam2 ENSMUST00000001055 ENSMUSP00000001055 TRANSLATION protein_coding - CCDS25555.1 1 277.0 0.0 5.33 3.9 143.0 0.0 4,-1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000001029 Icam2 ENSMUST00000173795 ENSMUSP00000133315 TRANSLATION protein_coding start/stop - 2 180.0 0.0 3.48 0.0 67.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001029 Icam2 ENSMUST00000106809 - NO_TRANSLATION retained_intron ENSMUSG00000001029 Icam2 ENSMUST00000141146 ENSMUSP00000118043 TRANSLATION protein_coding stop - 3 138.0 0.0 2.0 0.0 121.4 0.0 3,-2 0.0014 5 -2.0 MINOR ENSMUSG00000001029 Icam2 ENSMUST00000106813 ENSMUSP00000102426 TRANSLATION protein_coding stop - 2 162.0 0.0 3.33 0.0 143.0 0.0 4,-1 0.042 6 -2.0 MINOR ENSMUSG00000018160 Med1 ENSMUST00000129557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018160 Med1 ENSMUST00000092735 ENSMUSP00000090411 TRANSLATION protein_coding - - 1 629.0 0.0 0.0 0.0 221.5 0.0 -4,-5 0.0638 11 0.0 ALTERNATIVE:2 ENSMUSG00000018160 Med1 ENSMUST00000135479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018160 Med1 ENSMUST00000147933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018160 Med1 ENSMUST00000018304 ENSMUSP00000018304 TRANSLATION protein_coding - CCDS25341.1 1 1560.0 0.0 0.0 0.1 221.5 0.0 -4,-2 0.5653 23 0.0 ALTERNATIVE:2 ENSMUSG00000018160 Med1 ENSMUST00000107545 ENSMUSP00000103169 TRANSLATION protein_coding - CCDS36300.1 1 1575.0 0.0 0.0 2.2 221.5 0.0 -4,-5 1.0 23 1.0 PRINCIPAL:2 ENSMUSG00000018160 Med1 ENSMUST00000126483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018565 Elp5 ENSMUST00000138562 - NO_TRANSLATION retained_intron ENSMUSG00000018565 Elp5 ENSMUST00000142788 ENSMUSP00000136063 TRANSLATION nonsense_mediated_decay - - 3 63.0 0.0 1.28 0.0 0.0 0.0 -4,-7 0.0172 - -2.0 MINOR ENSMUSG00000018565 Elp5 ENSMUST00000123701 - NO_TRANSLATION retained_intron ENSMUSG00000018565 Elp5 ENSMUST00000147437 ENSMUSP00000117394 TRANSLATION protein_coding stop - 3 115.0 0.0 1.68 0.0 0.0 0.0 -4,-7 0.0161 1 -2.0 MINOR ENSMUSG00000018565 Elp5 ENSMUST00000151766 - NO_TRANSLATION retained_intron ENSMUSG00000018565 Elp5 ENSMUST00000127437 ENSMUSP00000136578 TRANSLATION nonsense_mediated_decay start - 3 49.0 0.0 0.85 0.0 0.0 0.0 -4,-5 0.0053 - -2.0 MINOR ENSMUSG00000018565 Elp5 ENSMUST00000143175 ENSMUSP00000136484 TRANSLATION protein_coding stop - 2 23.0 0.0 0.1 0.0 0.0 0.0 -3,-6 0.0141 - -2.0 MINOR ENSMUSG00000018565 Elp5 ENSMUST00000108595 ENSMUSP00000104236 TRANSLATION protein_coding stop - 5 140.0 0.0 1.98 0.0 0.0 0.0 -4,-7 0.0117 1 -2.0 MINOR ENSMUSG00000018565 Elp5 ENSMUST00000108594 ENSMUSP00000104235 TRANSLATION protein_coding - CCDS24926.1 1 300.0 0.0 2.54 0.7 0.0 0.0 -4,-7 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000018565 Elp5 ENSMUST00000143788 - NO_TRANSLATION retained_intron ENSMUSG00000020496 Rnf187 ENSMUST00000094151 ENSMUSP00000091703 TRANSLATION protein_coding start CCDS78953.1 1 236.0 8.0 0.652 2.2 34.7 0.0 -4,-6 1.0 4 -2.0 PRINCIPAL:1 ENSMUSG00000078619 Smarcd2 ENSMUST00000106843 ENSMUSP00000102456 TRANSLATION protein_coding - CCDS48957.1 1 484.0 0.0 3.6 0.0 68.2 0.0 -4,-2 0.2407 13 11.1 MINOR ENSMUSG00000078619 Smarcd2 ENSMUST00000155243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078619 Smarcd2 ENSMUST00000174017 - NO_TRANSLATION retained_intron ENSMUSG00000078619 Smarcd2 ENSMUST00000140255 ENSMUSP00000133629 TRANSLATION protein_coding start - 5 247.0 0.0 4.05 0.0 68.2 0.0 -4,-5 0.0162 6 -2.0 MINOR ENSMUSG00000078619 Smarcd2 ENSMUST00000132278 - NO_TRANSLATION retained_intron ENSMUSG00000078619 Smarcd2 ENSMUST00000174253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078619 Smarcd2 ENSMUST00000021052 ENSMUSP00000021052 TRANSLATION protein_coding - CCDS48958.1 1 531.0 0.0 3.6 10.5 68.2 0.0 -2,-5 1.0 13 14.1 PRINCIPAL:1 ENSMUSG00000078619 Smarcd2 ENSMUST00000155514 - NO_TRANSLATION retained_intron ENSMUSG00000078619 Smarcd2 ENSMUST00000106841 - NO_TRANSLATION retained_intron ENSMUSG00000018427 Ypel2 ENSMUST00000238921 ENSMUSP00000158888 TRANSLATION protein_coding - - - 152.0 4.0 3.25 0.0 48.0 0.0 -4,-7 0.0118 - 16.0 MINOR ENSMUSG00000018427 Ypel2 ENSMUST00000018571 ENSMUSP00000018571 TRANSLATION protein_coding - CCDS25205.1 1 119.0 4.0 3.25 36.9 48.0 0.0 -4,0 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000040350 Trim7 ENSMUST00000216796 - NO_TRANSLATION retained_intron ENSMUSG00000040350 Trim7 ENSMUST00000131270 - NO_TRANSLATION retained_intron ENSMUSG00000040350 Trim7 ENSMUST00000109213 ENSMUSP00000104836 TRANSLATION protein_coding - CCDS48779.1 1 303.0 0.0 3.515 4.4 123.9 0.0 -4,-5 0.304 2 6.336 MINOR ENSMUSG00000040350 Trim7 ENSMUST00000129674 ENSMUSP00000116067 TRANSLATION protein_coding stop - 3 54.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040350 Trim7 ENSMUST00000149049 ENSMUSP00000114958 TRANSLATION protein_coding stop - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040350 Trim7 ENSMUST00000046903 ENSMUSP00000039011 TRANSLATION protein_coding - CCDS83797.1 5 510.0 16.0 4.315 7.7 208.5 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000040350 Trim7 ENSMUST00000155478 ENSMUSP00000118669 TRANSLATION nonsense_mediated_decay - - 5 243.0 16.0 1.0 0.0 84.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020869 Lrrc59 ENSMUST00000021239 ENSMUSP00000021239 TRANSLATION protein_coding - CCDS25261.1 1 307.0 0.0 3.525 20.5 42.2 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000020869 Lrrc59 ENSMUST00000138782 - NO_TRANSLATION retained_intron ENSMUSG00000053113 Socs3 ENSMUST00000123255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053113 Socs3 ENSMUST00000054002 ENSMUSP00000059129 TRANSLATION protein_coding - CCDS25697.1 1 225.0 0.0 1.0 8.3 63.1 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053113 Socs3 ENSMUST00000132295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050813 Or2av9 ENSMUST00000180165 ENSMUSP00000136008 TRANSLATION protein_coding - CCDS56772.1 2 344.0 0.0 3.0 0.0 160.0 0.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050813 Or2av9 ENSMUST00000203744 ENSMUSP00000144797 TRANSLATION protein_coding stop - 3 33.0 0.0 1.0 0.0 27.1 0.0 0,-3 0.0045 - -2.0 MINOR ENSMUSG00000018593 Sparc ENSMUST00000213866 ENSMUSP00000149604 TRANSLATION protein_coding - - 5 332.0 10.0 5.93 0.0 228.5 0.0 1,2 0.0852 10 14.0 MINOR ENSMUSG00000018593 Sparc ENSMUST00000018737 ENSMUSP00000018737 TRANSLATION protein_coding - CCDS24712.1 1 302.0 10.0 5.93 28.7 228.5 0.0 4,-1 1.0 10 18.0 PRINCIPAL:4 ENSMUSG00000018593 Sparc ENSMUST00000130642 - NO_TRANSLATION retained_intron ENSMUSG00000018593 Sparc ENSMUST00000123775 - NO_TRANSLATION retained_intron ENSMUSG00000018593 Sparc ENSMUST00000216313 ENSMUSP00000149918 TRANSLATION protein_coding - - 5 332.0 10.0 5.93 0.0 228.5 0.0 1,2 0.0852 10 14.0 MINOR ENSMUSG00000018593 Sparc ENSMUST00000141530 ENSMUSP00000119475 TRANSLATION protein_coding stop - 5 172.0 0.0 2.85 0.0 93.5 0.0 4,-1 0.0 3 -2.0 MINOR ENSMUSG00000018593 Sparc ENSMUST00000108858 ENSMUSP00000104486 TRANSLATION protein_coding - CCDS70189.1 1 301.0 10.0 5.93 26.9 228.5 0.0 4,-1 0.9872 10 17.74 ALTERNATIVE:1 ENSMUSG00000018593 Sparc ENSMUST00000214685 ENSMUSP00000151000 TRANSLATION protein_coding - CCDS24712.1 5 302.0 10.0 5.93 28.7 228.5 0.0 4,-1 1.0 10 18.0 PRINCIPAL:4 ENSMUSG00000018593 Sparc ENSMUST00000125787 - NO_TRANSLATION retained_intron ENSMUSG00000013415 Igf2bp1 ENSMUST00000141515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013415 Igf2bp1 ENSMUST00000146586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013415 Igf2bp1 ENSMUST00000138513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013415 Igf2bp1 ENSMUST00000152896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013415 Igf2bp1 ENSMUST00000013559 ENSMUSP00000013559 TRANSLATION protein_coding - CCDS25286.1 1 577.0 0.0 12.15 17.3 252.7 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000044061 Or2w25 ENSMUST00000213169 ENSMUSP00000149203 TRANSLATION protein_coding_LoF stop - 5 316.0 0.0 1.0 4.0 158.1 0.0 -4,-7 0.922 - -2.0 PRINCIPAL:1 ENSMUSG00000038335 Tsr1 ENSMUST00000155702 ENSMUSP00000119868 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038335 Tsr1 ENSMUST00000153316 ENSMUSP00000114183 TRANSLATION nonsense_mediated_decay start - 3 40.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038335 Tsr1 ENSMUST00000130910 - NO_TRANSLATION retained_intron ENSMUSG00000038335 Tsr1 ENSMUST00000045807 ENSMUSP00000039027 TRANSLATION protein_coding - CCDS36225.1 1 803.0 0.0 11.76 9.8 501.9 0.0 -4,-6 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000038335 Tsr1 ENSMUST00000144019 - NO_TRANSLATION retained_intron ENSMUSG00000038335 Tsr1 ENSMUST00000155785 - NO_TRANSLATION retained_intron ENSMUSG00000038335 Tsr1 ENSMUST00000128230 ENSMUSP00000121384 TRANSLATION nonsense_mediated_decay - - 5 90.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018750 Zbtb4 ENSMUST00000108640 ENSMUSP00000104280 TRANSLATION protein_coding - CCDS36197.2 1 982.0 19.0 1.4 0.1 107.3 0.0 -4,-5 1.0 5 16.734 PRINCIPAL:1 ENSMUSG00000018750 Zbtb4 ENSMUST00000153943 ENSMUSP00000118027 TRANSLATION protein_coding stop - 5 50.0 0.0 0.8 0.0 31.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018750 Zbtb4 ENSMUST00000108639 ENSMUSP00000104279 TRANSLATION protein_coding - CCDS36197.2 1 982.0 19.0 1.4 0.1 107.3 0.0 -4,-5 1.0 5 16.734 PRINCIPAL:1 ENSMUSG00000018750 Zbtb4 ENSMUST00000132528 ENSMUSP00000121694 TRANSLATION protein_coding stop - 2 56.0 0.0 0.8 0.0 43.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018750 Zbtb4 ENSMUST00000108638 ENSMUSP00000104278 TRANSLATION protein_coding - - 1 364.0 8.0 1.775 0.0 91.4 0.0 -4,-5 0.0824 3 11.046 MINOR ENSMUSG00000018750 Zbtb4 ENSMUST00000156932 ENSMUSP00000115687 TRANSLATION protein_coding stop - 3 136.0 0.0 0.8 0.0 26.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018750 Zbtb4 ENSMUST00000108642 ENSMUSP00000104282 TRANSLATION protein_coding - - 5 219.0 0.0 0.8 0.0 58.2 0.0 -4,-5 0.0 2 5.76 MINOR ENSMUSG00000025175 Fn3k ENSMUST00000092302 ENSMUSP00000089955 TRANSLATION protein_coding - - 1 176.0 1.0 3.198 0.0 63.5 0.0 -4,-7 0.0 3 2.998 MINOR ENSMUSG00000025175 Fn3k ENSMUST00000103014 ENSMUSP00000099303 TRANSLATION protein_coding - CCDS25777.1 1 208.0 1.0 3.198 0.0 62.9 0.0 -4,-7 0.0016 3 2.998 MINOR ENSMUSG00000025175 Fn3k ENSMUST00000026175 ENSMUSP00000026175 TRANSLATION protein_coding - CCDS25776.1 1 309.0 2.0 5.198 33.2 249.0 0.0 -4,-7 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000041231 Ublcp1 ENSMUST00000156551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041231 Ublcp1 ENSMUST00000129054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041231 Ublcp1 ENSMUST00000102795 ENSMUSP00000099859 TRANSLATION protein_coding - CCDS24564.1 1 318.0 4.0 7.83 33.9 135.5 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000041231 Ublcp1 ENSMUST00000150032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041231 Ublcp1 ENSMUST00000136709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041231 Ublcp1 ENSMUST00000151875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002580 Mien1 ENSMUST00000002655 ENSMUSP00000002655 TRANSLATION protein_coding - CCDS25350.1 1 115.0 0.0 3.5 12.5 64.1 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000020701 Tmem132e ENSMUST00000132477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020701 Tmem132e ENSMUST00000092852 ENSMUSP00000090528 TRANSLATION protein_coding - - 2 982.0 0.0 0.0 0.1 718.1 1.0 0,-5 0.1441 13 5.904 MINOR ENSMUSG00000020701 Tmem132e ENSMUST00000054245 ENSMUSP00000052484 TRANSLATION protein_coding - CCDS25144.2 1 1074.0 0.0 0.0 5.0 719.7 1.0 0,-5 1.0 16 8.0 PRINCIPAL:1 ENSMUSG00000020701 Tmem132e ENSMUST00000202598 - NO_TRANSLATION retained_intron ENSMUSG00000020319 Wdpcp ENSMUST00000143608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020319 Wdpcp ENSMUST00000131135 ENSMUSP00000120122 TRANSLATION protein_coding stop - 3 97.0 0.0 0.0 0.0 66.9 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000020319 Wdpcp ENSMUST00000156624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020319 Wdpcp ENSMUST00000020568 ENSMUSP00000020568 TRANSLATION protein_coding - CCDS24467.1 1 722.0 0.0 0.0 3.6 912.0 0.0 -4,-7 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000020319 Wdpcp ENSMUST00000128794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020319 Wdpcp ENSMUST00000149757 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018012 Rac3 ENSMUST00000142229 ENSMUSP00000119523 TRANSLATION protein_coding stop - 3 185.0 24.0 4.5 35.7 168.6 0.0 -4,-7 0.6931 2 -2.0 MINOR ENSMUSG00000018012 Rac3 ENSMUST00000018156 ENSMUSP00000018156 TRANSLATION protein_coding - CCDS25754.1 1 192.0 24.0 4.83 36.9 183.7 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000018012 Rac3 ENSMUST00000134322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040481 Bptf ENSMUST00000149486 ENSMUSP00000122575 TRANSLATION protein_coding start/stop - 5 289.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0022 5 -2.0 MINOR ENSMUSG00000040481 Bptf ENSMUST00000147816 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040481 Bptf ENSMUST00000208369 ENSMUSP00000146600 TRANSLATION protein_coding start - 1 329.0 16.0 3.15 0.0 172.2 0.0 -4,-5 0.0596 1 -2.0 MINOR ENSMUSG00000040481 Bptf ENSMUST00000057892 ENSMUSP00000052303 TRANSLATION protein_coding - CCDS48964.1 5 2921.0 8.0 2.816 0.0 270.1 0.0 -4,-2 0.56 30 8.0 ALTERNATIVE:2 ENSMUSG00000040481 Bptf ENSMUST00000138443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040481 Bptf ENSMUST00000106762 ENSMUSP00000102373 TRANSLATION protein_coding - - 5 2973.0 8.0 2.816 0.0 270.1 0.0 -4,-2 0.4186 30 8.0 ALTERNATIVE:2 ENSMUSG00000040481 Bptf ENSMUST00000106763 ENSMUSP00000102374 TRANSLATION protein_coding - - 5 3036.0 8.0 2.816 0.0 270.1 0.0 -4,-2 0.8792 30 8.0 PRINCIPAL:2 ENSMUSG00000040481 Bptf ENSMUST00000133317 ENSMUSP00000118875 TRANSLATION protein_coding start - 2 158.0 2.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000020491 2810021J22Rik ENSMUST00000073924 ENSMUSP00000073579 TRANSLATION protein_coding - CCDS24751.1 1 539.0 28.0 1.6 0.0 206.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000020491 2810021J22Rik ENSMUST00000132570 ENSMUSP00000120692 TRANSLATION protein_coding stop - 3 68.0 0.0 1.375 0.0 75.9 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000014606 Slc25a11 ENSMUST00000134804 - NO_TRANSLATION retained_intron ENSMUSG00000014606 Slc25a11 ENSMUST00000014750 ENSMUSP00000014750 TRANSLATION protein_coding - CCDS24958.1 1 314.0 0.0 7.82 11.0 203.3 0.0 -4,-6 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000014606 Slc25a11 ENSMUST00000139638 ENSMUSP00000114685 TRANSLATION protein_coding stop - 3 193.0 0.0 5.25 0.0 121.9 0.0 -4,-7 0.0 11 -2.0 MINOR ENSMUSG00000014606 Slc25a11 ENSMUST00000136383 ENSMUSP00000120900 TRANSLATION protein_coding stop - 3 76.0 0.0 1.75 0.0 61.3 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000014606 Slc25a11 ENSMUST00000157076 - NO_TRANSLATION retained_intron ENSMUSG00000089876 Tmem102 ENSMUST00000051025 ENSMUSP00000132164 TRANSLATION protein_coding - CCDS36198.1 1 509.0 0.0 0.32 0.3 41.6 0.0 -4,-7 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000038224 Serpinf2 ENSMUST00000108437 ENSMUSP00000104076 TRANSLATION protein_coding - CCDS25046.1 1 491.0 0.0 5.85 2.8 301.0 0.0 1,-2 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000038224 Serpinf2 ENSMUST00000128330 ENSMUSP00000114450 TRANSLATION protein_coding stop - 3 280.0 0.0 4.6 0.0 164.7 0.0 1,-2 0.0018 11 -2.0 MINOR ENSMUSG00000038224 Serpinf2 ENSMUST00000142094 ENSMUSP00000120812 TRANSLATION nonsense_mediated_decay - - 2 61.0 0.0 0.6 0.0 0.0 0.0 1,-2 0.0017 1 -2.0 MINOR ENSMUSG00000038224 Serpinf2 ENSMUST00000043696 ENSMUSP00000048704 TRANSLATION protein_coding - CCDS25046.1 1 491.0 0.0 5.85 2.8 301.0 0.0 1,-2 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000045471 Hcrt ENSMUST00000055083 ENSMUSP00000057578 TRANSLATION protein_coding - CCDS25436.1 1 130.0 0.0 1.2 8.6 245.7 0.0 3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000045471 Hcrt ENSMUST00000107360 ENSMUSP00000102983 TRANSLATION protein_coding - - 5 106.0 0.0 0.8 0.0 177.0 0.0 3,-2 0.0025 - 5.88 MINOR ENSMUSG00000002057 Foxn1 ENSMUST00000108294 ENSMUSP00000103929 TRANSLATION protein_coding - CCDS25102.1 1 648.0 0.0 2.0 11.0 109.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020611 Gna13 ENSMUST00000106702 ENSMUSP00000102313 TRANSLATION protein_coding - - 1 173.0 9.0 2.0 0.0 101.6 0.0 -2,-5 0.0 8 3.0 MINOR ENSMUSG00000020611 Gna13 ENSMUST00000020930 ENSMUSP00000020930 TRANSLATION protein_coding - CCDS25577.1 1 377.0 23.0 3.5 31.0 362.7 0.0 -2,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000018752 Tnfsfm13 ENSMUST00000108649 ENSMUSP00000104289 TRANSLATION protein_coding,RT - - 5 329.0 0.0 4.625 1.0 63.5 0.0 -4,-6 0.4317 - -2.0 ALTERNATIVE:2 ENSMUSG00000018752 Tnfsfm13 ENSMUST00000180587 ENSMUSP00000137973 TRANSLATION protein_coding,RT - CCDS24906.1 2 410.0 2.0 4.825 0.0 73.2 0.0 -4,-6 0.2421 - -2.0 PRINCIPAL:5 ENSMUSG00000018752 Tnfsfm13 ENSMUST00000174159 ENSMUSP00000133951 TRANSLATION protein_coding,RT - CCDS48828.1 2 408.0 2.0 4.825 0.0 73.2 0.0 -4,-6 0.2396 - -2.0 ALTERNATIVE:2 ENSMUSG00000025371 Chmp6 ENSMUST00000148232 ENSMUSP00000117678 TRANSLATION protein_coding stop - 5 37.0 0.0 1.08 0.0 28.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025371 Chmp6 ENSMUST00000137055 - NO_TRANSLATION retained_intron ENSMUSG00000025371 Chmp6 ENSMUST00000132197 ENSMUSP00000114645 TRANSLATION protein_coding stop - 3 78.0 0.0 2.33 0.0 64.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025371 Chmp6 ENSMUST00000026434 ENSMUSP00000026434 TRANSLATION protein_coding - CCDS36385.1 1 200.0 0.0 4.88 24.2 137.0 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000025371 Chmp6 ENSMUST00000124199 ENSMUSP00000116677 TRANSLATION protein_coding stop - 3 24.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025371 Chmp6 ENSMUST00000139814 - NO_TRANSLATION retained_intron ENSMUSG00000018570 2810408A11Rik ENSMUST00000108621 ENSMUSP00000104261 TRANSLATION protein_coding - - 5 420.0 0.0 0.0 0.0 98.4 0.0 -4,-5 0.1165 4 2.0 ALTERNATIVE:2 ENSMUSG00000018570 2810408A11Rik ENSMUST00000129234 ENSMUSP00000136835 TRANSLATION nonsense_mediated_decay - - 1 155.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018570 2810408A11Rik ENSMUST00000144431 ENSMUSP00000135926 TRANSLATION nonsense_mediated_decay - - 1 155.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018570 2810408A11Rik ENSMUST00000100969 ENSMUSP00000098529 TRANSLATION protein_coding - CCDS83827.1 1 403.0 0.0 0.0 0.0 90.6 0.0 -4,-5 0.0832 3 0.0 MINOR ENSMUSG00000018570 2810408A11Rik ENSMUST00000018714 ENSMUSP00000018714 TRANSLATION protein_coding - CCDS83828.1 1 408.0 0.0 0.0 0.0 98.4 0.0 -4,-5 0.234 4 2.0 ALTERNATIVE:2 ENSMUSG00000018570 2810408A11Rik ENSMUST00000128046 ENSMUSP00000137547 TRANSLATION protein_coding stop - 3 77.0 0.0 0.0 0.0 64.8 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000018570 2810408A11Rik ENSMUST00000102580 ENSMUSP00000099640 TRANSLATION protein_coding - CCDS24920.1 1 435.0 0.0 0.0 0.0 98.4 0.0 -4,-5 1.0 4 2.0 PRINCIPAL:2 ENSMUSG00000018570 2810408A11Rik ENSMUST00000137122 - NO_TRANSLATION retained_intron ENSMUSG00000018570 2810408A11Rik ENSMUST00000142121 - NO_TRANSLATION retained_intron ENSMUSG00000042678 Myo15a ENSMUST00000094135 ENSMUSP00000091686 TRANSLATION protein_coding - CCDS48811.1 5 3493.0 15.0 23.9285 0.0 1066.9 0.0 -4,-5 0.6614 - 13.598 ALTERNATIVE:2 ENSMUSG00000042678 Myo15a ENSMUST00000071880 ENSMUSP00000071777 TRANSLATION protein_coding - CCDS24792.1 5 3511.0 15.0 24.1285 0.0 1066.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000042678 Myo15a ENSMUST00000238401 ENSMUSP00000158855 TRANSLATION protein_coding stop - - 77.0 0.0 0.0 0.0 0.0 0.0 -3,0 0.0 - -2.0 MINOR ENSMUSG00000042678 Myo15a ENSMUST00000122825 - NO_TRANSLATION retained_intron ENSMUSG00000042678 Myo15a ENSMUST00000126522 ENSMUSP00000120839 TRANSLATION protein_coding start/stop - 1 1784.0 15.0 19.40875 0.0 951.3 0.0 -4,-6 0.1301 - -2.0 MINOR ENSMUSG00000042678 Myo15a ENSMUST00000081823 ENSMUSP00000080507 TRANSLATION protein_coding - CCDS24793.1 5 2306.0 15.0 23.9285 0.0 1066.9 0.0 -4,-7 0.545 - 13.598 ALTERNATIVE:2 ENSMUSG00000078269 Gm14180 ENSMUST00000105066 ENSMUSP00000100687 TRANSLATION protein_coding - - - 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000020120 Plek ENSMUST00000020321 ENSMUSP00000020321 TRANSLATION protein_coding - - 1 327.0 12.0 7.5 0.9 167.9 0.0 -4,-5 0.011 7 14.904 MINOR ENSMUSG00000020120 Plek ENSMUST00000102881 ENSMUSP00000099945 TRANSLATION protein_coding - CCDS24446.1 1 350.0 12.0 8.33 32.9 191.8 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000020120 Plek ENSMUST00000156101 ENSMUSP00000122225 TRANSLATION protein_coding stop - 3 46.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000059248 Septin9 ENSMUST00000155331 - NO_TRANSLATION retained_intron ENSMUSG00000059248 Septin9 ENSMUST00000106354 ENSMUSP00000101961 TRANSLATION protein_coding - - 5 565.0 19.0 8.15 6.5 370.3 0.0 -4,-5 0.5491 30 15.572 MINOR ENSMUSG00000059248 Septin9 ENSMUST00000129387 - NO_TRANSLATION retained_intron ENSMUSG00000059248 Septin9 ENSMUST00000019038 ENSMUSP00000019038 TRANSLATION protein_coding - CCDS48991.1 1 576.0 19.0 8.15 8.0 370.3 0.0 -4,-5 0.6512 30 16.001 ALTERNATIVE:1 ENSMUSG00000059248 Septin9 ENSMUST00000134852 - NO_TRANSLATION retained_intron ENSMUSG00000059248 Septin9 ENSMUST00000100193 ENSMUSP00000097767 TRANSLATION protein_coding - CCDS25684.1 1 334.0 19.0 8.15 11.5 370.3 0.0 -4,-5 1.0 19 17.0 PRINCIPAL:2 ENSMUSG00000059248 Septin9 ENSMUST00000093907 ENSMUSP00000091435 TRANSLATION protein_coding - CCDS48990.1 1 583.0 19.0 8.15 4.6 370.3 0.0 -4,-1 0.4896 32 15.029 MINOR ENSMUSG00000059248 Septin9 ENSMUST00000106349 ENSMUSP00000101956 TRANSLATION protein_coding - CCDS25684.1 1 334.0 19.0 8.15 11.5 370.3 0.0 -4,-5 1.0 19 17.0 PRINCIPAL:2 ENSMUSG00000059248 Septin9 ENSMUST00000127383 ENSMUSP00000120065 TRANSLATION protein_coding stop - 5 242.0 16.0 5.15 0.0 255.8 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000059248 Septin9 ENSMUST00000153668 ENSMUSP00000120382 TRANSLATION protein_coding stop - 2 74.0 7.0 1.15 0.0 38.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000078632 Lrrc37a ENSMUST00000153273 ENSMUSP00000121903 TRANSLATION protein_coding - - 5 3298.0 0.0 5.5 0.0 1065.7 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000034282 Evpl ENSMUST00000037007 ENSMUSP00000037850 TRANSLATION protein_coding - CCDS25661.1 2 2035.0 0.0 5.87 6.4 98.9 0.0 -4,-6 1.0 55 14.0 PRINCIPAL:1 ENSMUSG00000019461 Plscr3 ENSMUST00000108632 ENSMUSP00000104272 TRANSLATION protein_coding - CCDS24916.1 1 296.0 0.0 0.323 7.6 285.3 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000019461 Plscr3 ENSMUST00000019605 ENSMUSP00000019605 TRANSLATION protein_coding - CCDS24916.1 1 296.0 0.0 0.323 7.6 285.3 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000019461 Plscr3 ENSMUST00000108633 ENSMUSP00000104273 TRANSLATION protein_coding - CCDS24916.1 1 296.0 0.0 0.323 7.6 285.3 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000019461 Plscr3 ENSMUST00000152566 ENSMUSP00000123549 TRANSLATION protein_coding stop - 3 224.0 0.0 0.323 0.0 181.8 0.0 -4,-7 0.0197 2 -2.0 MINOR ENSMUSG00000041164 Zmiz2 ENSMUST00000109787 ENSMUSP00000105410 TRANSLATION protein_coding - CCDS24418.1 5 920.0 4.0 2.17 9.9 81.3 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000041164 Zmiz2 ENSMUST00000102914 ENSMUSP00000099978 TRANSLATION protein_coding - CCDS24417.1 1 888.0 4.0 2.17 3.5 81.3 0.0 -4,-5 0.5394 2 16.843 MINOR ENSMUSG00000041164 Zmiz2 ENSMUST00000109786 ENSMUSP00000105409 TRANSLATION protein_coding - CCDS24418.1 5 920.0 4.0 2.17 9.9 81.3 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000041164 Zmiz2 ENSMUST00000124588 - NO_TRANSLATION retained_intron ENSMUSG00000041164 Zmiz2 ENSMUST00000109785 ENSMUSP00000105408 TRANSLATION protein_coding - - 5 894.0 4.0 2.17 5.7 81.3 0.0 -4,-5 0.6992 2 17.584 MINOR ENSMUSG00000041164 Zmiz2 ENSMUST00000012612 ENSMUSP00000012612 TRANSLATION protein_coding - CCDS24418.1 5 920.0 4.0 2.17 9.9 81.3 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000060756 Krtap2-4 ENSMUST00000074926 ENSMUSP00000074461 TRANSLATION protein_coding - CCDS48911.1 - 131.0 0.0 0.0 6.9 38.2 0.0 -3,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000094845 Tmem95 ENSMUST00000178597 ENSMUSP00000137492 TRANSLATION protein_coding - CCDS56783.1 5 176.0 0.0 3.41 5.3 264.6 0.0 3,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000005952 Trpv1 ENSMUST00000108470 ENSMUSP00000104110 TRANSLATION protein_coding - - 5 471.0 0.0 8.0 0.0 56.3 6.0 -4,-6 0.0063 1 3.852 MINOR ENSMUSG00000005952 Trpv1 ENSMUST00000138853 ENSMUSP00000116400 TRANSLATION protein_coding stop - 5 474.0 0.0 9.0 0.0 56.3 6.0 -4,-5 0.0062 - -2.0 MINOR ENSMUSG00000005952 Trpv1 ENSMUST00000006106 ENSMUSP00000006106 TRANSLATION protein_coding - - 5 779.0 7.0 12.0 0.0 87.7 6.0 -4,-5 0.0419 3 16.002 MINOR ENSMUSG00000005952 Trpv1 ENSMUST00000128113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005952 Trpv1 ENSMUST00000102526 ENSMUSP00000099585 TRANSLATION protein_coding - CCDS25003.1 1 839.0 7.0 13.0 6.7 87.7 6.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000025574 Tk1 ENSMUST00000153872 - NO_TRANSLATION retained_intron ENSMUSG00000025574 Tk1 ENSMUST00000141939 - NO_TRANSLATION retained_intron ENSMUSG00000025574 Tk1 ENSMUST00000150027 - NO_TRANSLATION retained_intron ENSMUSG00000025574 Tk1 ENSMUST00000153298 - NO_TRANSLATION retained_intron ENSMUSG00000025574 Tk1 ENSMUST00000154790 - NO_TRANSLATION retained_intron ENSMUSG00000025574 Tk1 ENSMUST00000026661 ENSMUSP00000026661 TRANSLATION protein_coding - CCDS25692.1 1 233.0 25.0 5.23 12.7 237.1 0.0 -4,-7 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000025574 Tk1 ENSMUST00000129852 - NO_TRANSLATION retained_intron ENSMUSG00000020409 Slu7 ENSMUST00000151880 ENSMUSP00000116609 TRANSLATION protein_coding stop - 1 497.0 0.0 3.565 0.0 365.2 0.0 -4,-5 0.0412 7 -2.0 MINOR ENSMUSG00000020409 Slu7 ENSMUST00000136541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020409 Slu7 ENSMUST00000178622 ENSMUSP00000137281 TRANSLATION protein_coding - CCDS24557.1 2 585.0 0.0 3.565 12.8 365.2 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000020409 Slu7 ENSMUST00000126128 ENSMUSP00000122142 TRANSLATION protein_coding stop - 5 108.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020409 Slu7 ENSMUST00000020681 ENSMUSP00000020681 TRANSLATION protein_coding - CCDS24557.1 1 585.0 0.0 3.565 12.8 365.2 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000020409 Slu7 ENSMUST00000149402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009900 Wnt3a ENSMUST00000010044 ENSMUSP00000010044 TRANSLATION protein_coding - CCDS24766.1 1 352.0 0.0 3.0 16.5 402.9 0.0 2,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000045374 Wdr81 ENSMUST00000173320 ENSMUSP00000134266 TRANSLATION protein_coding - CCDS48849.1 5 1934.0 0.0 1.252 4.6 158.0 0.0 -4,-1 1.0 27 14.0 PRINCIPAL:1 ENSMUSG00000045374 Wdr81 ENSMUST00000135804 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045374 Wdr81 ENSMUST00000117392 ENSMUSP00000113939 TRANSLATION protein_coding start - 5 1934.0 0.0 1.252 4.6 158.0 0.0 -4,-1 0.8343 27 -2.0 MINOR ENSMUSG00000045374 Wdr81 ENSMUST00000132442 ENSMUSP00000120605 TRANSLATION protein_coding start - 1 756.0 0.0 0.652 0.0 25.9 0.0 -4,-5 0.007 14 -2.0 MINOR ENSMUSG00000025578 Cbx8 ENSMUST00000026663 ENSMUSP00000026663 TRANSLATION protein_coding - CCDS25709.1 1 362.0 0.0 2.6 1.0 108.8 0.0 -4,-7 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000025578 Cbx8 ENSMUST00000143831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025578 Cbx8 ENSMUST00000128019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017404 Rpl19 ENSMUST00000134435 - NO_TRANSLATION retained_intron ENSMUSG00000017404 Rpl19 ENSMUST00000017548 ENSMUSP00000017548 TRANSLATION protein_coding - CCDS25337.1 1 196.0 0.0 5.0 34.9 225.4 0.0 -4,-2 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000017404 Rpl19 ENSMUST00000092425 ENSMUSP00000103181 TRANSLATION protein_coding - CCDS48900.1 3 194.0 0.0 5.0 34.9 225.4 0.0 -4,-7 0.9824 6 12.0 ALTERNATIVE:1 ENSMUSG00000020358 Hnrnpab ENSMUST00000109103 ENSMUSP00000104731 TRANSLATION protein_coding - CCDS48787.1 1 332.0 0.0 3.2 2.0 186.9 0.0 -4,-5 1.0 10 9.0 PRINCIPAL:2 ENSMUSG00000020358 Hnrnpab ENSMUST00000074669 ENSMUSP00000074238 TRANSLATION protein_coding - CCDS24654.1 1 285.0 0.0 3.2 1.1 186.9 0.0 -4,-5 0.4689 10 8.1 ALTERNATIVE:2 ENSMUSG00000020358 Hnrnpab ENSMUST00000101249 ENSMUSP00000098807 TRANSLATION protein_coding - - 1 311.0 0.0 3.2 0.0 186.9 0.0 -4,-5 0.0287 10 8.0 ALTERNATIVE:2 ENSMUSG00000045775 Slc16a5 ENSMUST00000146500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045775 Slc16a5 ENSMUST00000133636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045775 Slc16a5 ENSMUST00000139318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045775 Slc16a5 ENSMUST00000140567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045775 Slc16a5 ENSMUST00000153466 ENSMUSP00000117727 TRANSLATION protein_coding stop - 3 137.0 0.0 1.4 0.0 0.0 3.0 1,-3 0.0054 - -2.0 MINOR ENSMUSG00000045775 Slc16a5 ENSMUST00000125251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045775 Slc16a5 ENSMUST00000106532 ENSMUSP00000102142 TRANSLATION protein_coding - - 1 149.0 0.0 0.8 0.0 0.0 2.0 1,-4 0.2347 - 2.526 PRINCIPAL:1 ENSMUSG00000045775 Slc16a5 ENSMUST00000140739 - NO_TRANSLATION retained_intron ENSMUSG00000045775 Slc16a5 ENSMUST00000092445 ENSMUSP00000090102 TRANSLATION protein_coding stop CCDS36373.1 5 468.0 0.0 1.9 6.3 140.6 12.0 1,-3 1.0 - -2.0 MINOR ENSMUSG00000023723 Mrps23 ENSMUST00000024486 ENSMUSP00000024486 TRANSLATION protein_coding - CCDS25227.1 1 177.0 0.0 3.25 0.8 168.9 0.0 -4,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000023723 Mrps23 ENSMUST00000107915 ENSMUSP00000103548 TRANSLATION protein_coding - - 5 100.0 0.0 2.25 0.0 134.2 0.0 -4,-2 0.0 4 7.92 MINOR ENSMUSG00000023723 Mrps23 ENSMUST00000144070 ENSMUSP00000122963 TRANSLATION protein_coding start - 2 120.0 0.0 1.75 0.0 52.8 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000023723 Mrps23 ENSMUST00000139170 ENSMUSP00000117416 TRANSLATION protein_coding stop - 3 121.0 0.0 2.75 0.0 136.9 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000023723 Mrps23 ENSMUST00000118784 ENSMUSP00000113512 TRANSLATION protein_coding - CCDS70279.1 1 158.0 0.0 2.75 0.0 136.9 0.0 -4,-6 0.0149 4 9.078 MINOR ENSMUSG00000018479 Chct1 ENSMUST00000018623 ENSMUSP00000018623 TRANSLATION protein_coding - CCDS48872.1 1 236.0 0.0 2.0 8.6 64.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018479 Chct1 ENSMUST00000100681 ENSMUSP00000098248 TRANSLATION protein_coding - - 1 126.0 0.0 1.0 0.1 0.0 0.0 -4,-2 0.0013 - 3.0 MINOR ENSMUSG00000011877 Git1 ENSMUST00000037285 ENSMUSP00000037210 TRANSLATION protein_coding - CCDS25080.1 1 770.0 4.0 11.397 9.8 485.3 0.0 -4,-5 1.0 20 15.0 PRINCIPAL:3 ENSMUSG00000011877 Git1 ENSMUST00000128796 - NO_TRANSLATION retained_intron ENSMUSG00000011877 Git1 ENSMUST00000152428 - NO_TRANSLATION retained_intron ENSMUSG00000011877 Git1 ENSMUST00000100812 ENSMUSP00000098375 TRANSLATION protein_coding - - 5 761.0 4.0 11.265 8.9 485.3 0.0 -4,-5 0.7933 18 14.43 ALTERNATIVE:1 ENSMUSG00000011877 Git1 ENSMUST00000139410 - NO_TRANSLATION retained_intron ENSMUSG00000011877 Git1 ENSMUST00000127302 - NO_TRANSLATION retained_intron ENSMUSG00000018774 Cd68 ENSMUST00000108654 ENSMUSP00000104294 TRANSLATION protein_coding - - 5 335.0 0.0 4.348 0.0 262.3 1.0 1,-2 0.5352 2 6.0 ALTERNATIVE:2 ENSMUSG00000018774 Cd68 ENSMUST00000018918 ENSMUSP00000018918 TRANSLATION protein_coding - CCDS70216.1 1 326.0 0.0 4.15 0.0 274.5 1.0 1,-2 0.6166 2 5.604 PRINCIPAL:4 ENSMUSG00000018774 Cd68 ENSMUST00000154124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018287 Spag7 ENSMUST00000129434 ENSMUSP00000115098 TRANSLATION protein_coding stop - 3 155.0 0.0 2.75 0.0 40.8 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000018287 Spag7 ENSMUST00000018431 ENSMUSP00000018431 TRANSLATION protein_coding - CCDS24962.1 1 227.0 0.0 3.08 13.5 53.2 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000018287 Spag7 ENSMUST00000124691 - NO_TRANSLATION retained_intron ENSMUSG00000018287 Spag7 ENSMUST00000137691 - NO_TRANSLATION retained_intron ENSMUSG00000034793 G6pc3 ENSMUST00000131382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034793 G6pc3 ENSMUST00000124594 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034793 G6pc3 ENSMUST00000153178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034793 G6pc3 ENSMUST00000070334 ENSMUSP00000064276 TRANSLATION protein_coding - CCDS25491.1 1 346.0 3.0 6.0 14.5 71.8 6.0 -4,-7 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000034793 G6pc3 ENSMUST00000078975 ENSMUSP00000077995 TRANSLATION protein_coding - CCDS25491.1 1 346.0 3.0 6.0 14.5 71.8 6.0 -4,-7 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000034793 G6pc3 ENSMUST00000139995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034793 G6pc3 ENSMUST00000145490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018919 Tm4sf5 ENSMUST00000179986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018919 Tm4sf5 ENSMUST00000019063 ENSMUSP00000019063 TRANSLATION protein_coding - CCDS24950.1 1 196.0 0.0 3.75 8.7 230.3 0.0 1,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000018919 Tm4sf5 ENSMUST00000141924 - NO_TRANSLATION retained_intron ENSMUSG00000058546 Rpl23a ENSMUST00000127270 - NO_TRANSLATION retained_intron ENSMUSG00000058546 Rpl23a ENSMUST00000144561 - NO_TRANSLATION retained_intron ENSMUSG00000058546 Rpl23a ENSMUST00000102483 ENSMUSP00000099541 TRANSLATION protein_coding - CCDS25093.1 1 156.0 0.0 2.55 33.9 97.5 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000040711 Sh3pxd2b ENSMUST00000239041 ENSMUSP00000158896 TRANSLATION protein_coding - - - 936.0 0.0 6.65 1.4 214.4 0.0 -4,-2 0.8894 13 9.0 PRINCIPAL:4 ENSMUSG00000040711 Sh3pxd2b ENSMUST00000038753 ENSMUSP00000044276 TRANSLATION protein_coding - CCDS24526.1 1 908.0 0.0 6.65 0.0 214.4 0.0 -4,-2 0.7095 13 8.0 ALTERNATIVE:2 ENSMUSG00000040711 Sh3pxd2b ENSMUST00000138771 - NO_TRANSLATION retained_intron ENSMUSG00000076435 Acsf2 ENSMUST00000131808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076435 Acsf2 ENSMUST00000103164 ENSMUSP00000099453 TRANSLATION protein_coding - CCDS25259.1 1 615.0 22.0 8.96 7.1 397.4 0.0 -4,0 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000076435 Acsf2 ENSMUST00000155122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076435 Acsf2 ENSMUST00000144615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014349 Ube2z ENSMUST00000100528 ENSMUSP00000098097 TRANSLATION protein_coding - CCDS36289.1 1 356.0 0.0 6.15 4.6 102.1 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000039253 Fn3krp ENSMUST00000038096 ENSMUSP00000038061 TRANSLATION protein_coding - CCDS25775.1 1 309.0 2.0 5.2475 33.2 259.8 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000018501 Ncor1 ENSMUST00000141447 ENSMUSP00000123822 TRANSLATION protein_coding stop - 5 163.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000161432 - NO_TRANSLATION retained_intron ENSMUSG00000018501 Ncor1 ENSMUST00000018645 ENSMUSP00000018645 TRANSLATION protein_coding - CCDS56781.1 5 2454.0 4.0 6.266 0.0 173.1 0.0 -4,-2 0.9083 42 12.0 PRINCIPAL:3 ENSMUSG00000018501 Ncor1 ENSMUST00000161281 - NO_TRANSLATION retained_intron ENSMUSG00000018501 Ncor1 ENSMUST00000155712 ENSMUSP00000122654 TRANSLATION protein_coding start - 5 1724.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0437 30 -2.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000101068 - NO_TRANSLATION retained_intron ENSMUSG00000018501 Ncor1 ENSMUST00000037575 ENSMUSP00000038900 TRANSLATION protein_coding - - 1 1399.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0363 31 0.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000161767 - NO_TRANSLATION retained_intron ENSMUSG00000018501 Ncor1 ENSMUST00000159224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018501 Ncor1 ENSMUST00000161699 ENSMUSP00000124120 TRANSLATION protein_coding start/stop - 3 254.0 0.0 1.866 0.0 50.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000161288 ENSMUSP00000124045 TRANSLATION protein_coding start/stop - 5 216.0 0.0 1.866 0.0 50.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000101067 ENSMUSP00000098628 TRANSLATION protein_coding - - 5 2386.0 4.0 6.266 0.0 173.1 0.0 -4,-2 1.0 41 12.0 ALTERNATIVE:2 ENSMUSG00000018501 Ncor1 ENSMUST00000156740 ENSMUSP00000125458 TRANSLATION protein_coding start - 5 1389.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0336 30 -2.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000101066 ENSMUSP00000098627 TRANSLATION protein_coding - CCDS56781.1 5 2454.0 4.0 6.266 0.0 173.1 0.0 -4,-2 0.9083 42 12.0 PRINCIPAL:3 ENSMUSG00000018501 Ncor1 ENSMUST00000161116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018501 Ncor1 ENSMUST00000069456 ENSMUSP00000068974 TRANSLATION protein_coding - CCDS56782.1 1 291.0 0.0 1.5 0.7 122.7 0.0 -4,-2 0.0239 5 1.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000162077 - NO_TRANSLATION retained_intron ENSMUSG00000018501 Ncor1 ENSMUST00000160171 - NO_TRANSLATION retained_intron ENSMUSG00000018501 Ncor1 ENSMUST00000151498 ENSMUSP00000125317 TRANSLATION protein_coding start/stop - 1 993.0 4.0 4.366 0.0 50.4 0.0 -4,-6 0.0102 13 -2.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000127471 ENSMUSP00000121806 TRANSLATION protein_coding stop - 5 791.0 4.0 5.866 0.0 173.1 0.0 -4,-2 0.0831 9 -2.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000155486 ENSMUSP00000122647 TRANSLATION protein_coding stop - 5 541.0 4.0 4.0 0.0 122.7 0.0 -4,-2 0.0008 9 -2.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000162236 ENSMUSP00000124698 TRANSLATION protein_coding start/stop - 3 261.0 0.0 1.866 0.0 50.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000131911 - NO_TRANSLATION retained_intron ENSMUSG00000018501 Ncor1 ENSMUST00000159315 ENSMUSP00000124175 TRANSLATION protein_coding start - 2 157.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000018501 Ncor1 ENSMUST00000124027 - NO_TRANSLATION retained_intron ENSMUSG00000070354 Evi2 ENSMUST00000093983 ENSMUSP00000091519 TRANSLATION nonsense_mediated_decay,RT - - 1 77.0 0.0 0.0 0.0 62.6 0.0 -2,-4 0.7004 - -2.0 PRINCIPAL:1 ENSMUSG00000050087 Cby3 ENSMUST00000052596 ENSMUSP00000052281 TRANSLATION protein_coding - - 1 140.0 0.0 0.0 2.0 96.1 0.0 -4,-6 0.7561 - 7.0 PRINCIPAL:1 ENSMUSG00000020834 Dhrs13 ENSMUST00000021187 ENSMUSP00000021187 TRANSLATION protein_coding - CCDS36236.1 1 376.0 31.0 4.13 0.0 105.6 0.0 -2,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000020834 Dhrs13 ENSMUST00000122342 ENSMUSP00000112553 TRANSLATION protein_coding - - 1 326.0 26.0 3.3 0.0 62.6 0.0 -4,0 0.0075 9 10.422 MINOR ENSMUSG00000020834 Dhrs13 ENSMUST00000092881 ENSMUSP00000090557 TRANSLATION protein_coding stop - 3 116.0 10.0 2.23 0.0 35.8 0.0 -2,-5 0.0 4 -2.0 MINOR ENSMUSG00000020834 Dhrs13 ENSMUST00000144028 ENSMUSP00000114674 TRANSLATION nonsense_mediated_decay - - 1 47.0 0.0 0.5 0.0 0.0 0.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000042506 Usp22 ENSMUST00000173525 - NO_TRANSLATION retained_intron ENSMUSG00000042506 Usp22 ENSMUST00000174220 - NO_TRANSLATION retained_intron ENSMUSG00000042506 Usp22 ENSMUST00000041683 ENSMUSP00000041263 TRANSLATION protein_coding - CCDS24807.1 1 525.0 20.0 5.892 4.9 246.1 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000042506 Usp22 ENSMUST00000174035 - NO_TRANSLATION retained_intron ENSMUSG00000042506 Usp22 ENSMUST00000174301 ENSMUSP00000135872 TRANSLATION nonsense_mediated_decay start - 5 21.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078651 Aoc2 ENSMUST00000107264 ENSMUSP00000102885 TRANSLATION protein_coding - - 5 730.0 18.0 4.0 1.0 414.7 0.0 1,-3 0.0549 - 10.5 MINOR ENSMUSG00000078651 Aoc2 ENSMUST00000041095 ENSMUSP00000040255 TRANSLATION protein_coding - CCDS25464.1 1 757.0 18.0 4.75 8.9 521.2 0.0 1,-3 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000020482 Ccdc117 ENSMUST00000020776 ENSMUSP00000020776 TRANSLATION protein_coding - CCDS24401.1 1 277.0 0.0 0.0 9.9 178.5 0.0 -4,-7 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000020867 Spata20 ENSMUST00000151707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020867 Spata20 ENSMUST00000041705 ENSMUSP00000042572 TRANSLATION protein_coding - CCDS25256.1 1 790.0 0.0 13.85 6.5 240.2 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000020867 Spata20 ENSMUST00000125310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020867 Spata20 ENSMUST00000136362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020867 Spata20 ENSMUST00000134332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049800 Sertad2 ENSMUST00000145328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049800 Sertad2 ENSMUST00000109585 ENSMUSP00000105214 TRANSLATION protein_coding - CCDS24458.1 1 309.0 0.0 0.0 3.4 60.9 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000049800 Sertad2 ENSMUST00000109586 ENSMUSP00000105215 TRANSLATION protein_coding - CCDS24458.1 1 309.0 0.0 0.0 3.4 60.9 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000049800 Sertad2 ENSMUST00000093292 ENSMUSP00000090981 TRANSLATION protein_coding - CCDS24458.1 1 309.0 0.0 0.0 3.4 60.9 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000020831 0610010K14Rik ENSMUST00000100950 ENSMUSP00000098510 TRANSLATION protein_coding - - 2 155.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0082 7 4.512 MINOR ENSMUSG00000020831 0610010K14Rik ENSMUST00000108576 ENSMUSP00000104216 TRANSLATION protein_coding - CCDS48834.1 2 191.0 0.0 1.33 18.8 0.0 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000020831 0610010K14Rik ENSMUST00000108577 ENSMUSP00000104218 TRANSLATION protein_coding - - 5 102.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0375 6 6.0 MINOR ENSMUSG00000020831 0610010K14Rik ENSMUST00000108575 ENSMUSP00000104215 TRANSLATION protein_coding - CCDS48831.1 2 109.0 0.0 1.33 0.1 0.0 0.0 -4,-5 0.1742 6 6.0 MINOR ENSMUSG00000020831 0610010K14Rik ENSMUST00000135390 ENSMUSP00000134994 TRANSLATION protein_coding start - 2 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0133 4 -2.0 MINOR ENSMUSG00000020831 0610010K14Rik ENSMUST00000021180 ENSMUSP00000021180 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0421 3 -2.0 MINOR ENSMUSG00000020831 0610010K14Rik ENSMUST00000150504 - NO_TRANSLATION retained_intron ENSMUSG00000020831 0610010K14Rik ENSMUST00000148878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020831 0610010K14Rik ENSMUST00000138658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020831 0610010K14Rik ENSMUST00000021181 ENSMUSP00000021181 TRANSLATION protein_coding - CCDS48833.1 1 156.0 0.0 1.33 5.2 0.0 0.0 -4,-5 0.3616 7 6.944 MINOR ENSMUSG00000020831 0610010K14Rik ENSMUST00000102569 ENSMUSP00000099629 TRANSLATION protein_coding - CCDS24940.1 1 137.0 0.0 1.33 8.0 0.0 0.0 -4,-5 0.6036 6 7.572 MINOR ENSMUSG00000020831 0610010K14Rik ENSMUST00000134700 ENSMUSP00000119483 TRANSLATION protein_coding start - 5 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0102 4 -2.0 MINOR ENSMUSG00000020831 0610010K14Rik ENSMUST00000108578 ENSMUSP00000104219 TRANSLATION protein_coding - CCDS48835.1 1 171.0 0.0 1.33 10.9 0.0 0.0 -4,-5 0.8376 7 8.224 MINOR ENSMUSG00000020831 0610010K14Rik ENSMUST00000108579 ENSMUSP00000104220 TRANSLATION protein_coding - CCDS48832.1 1 122.0 0.0 1.33 1.8 0.0 0.0 -4,-5 0.288 6 6.18 MINOR ENSMUSG00000044041 Krt13 ENSMUST00000007275 ENSMUSP00000007275 TRANSLATION protein_coding - CCDS25409.1 1 437.0 0.0 4.608 1.1 396.9 0.0 -4,-2 1.0 19 13.0 PRINCIPAL:1 ENSMUSG00000044041 Krt13 ENSMUST00000128934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044041 Krt13 ENSMUST00000134282 - NO_TRANSLATION retained_intron ENSMUSG00000048878 Hexim1 ENSMUST00000053063 ENSMUSP00000057339 TRANSLATION protein_coding - CCDS25513.1 - 356.0 0.0 0.5 7.2 185.4 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000020173 Cobl ENSMUST00000172919 ENSMUSP00000133669 TRANSLATION protein_coding - - 1 349.0 0.0 1.0 0.0 149.1 0.0 -4,-7 0.0004 5 3.102 MINOR ENSMUSG00000020173 Cobl ENSMUST00000136549 ENSMUSP00000114779 TRANSLATION protein_coding start - 2 159.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000020173 Cobl ENSMUST00000174874 ENSMUSP00000133470 TRANSLATION protein_coding - CCDS70142.1 1 1330.0 0.0 2.4 0.1 198.8 0.0 -4,-5 0.6808 30 8.0 ALTERNATIVE:2 ENSMUSG00000020173 Cobl ENSMUST00000172956 ENSMUSP00000134372 TRANSLATION nonsense_mediated_decay - - 1 410.0 0.0 1.0 0.0 149.1 0.0 -4,-7 0.0004 7 -2.0 MINOR ENSMUSG00000020173 Cobl ENSMUST00000046755 ENSMUSP00000045693 TRANSLATION protein_coding - CCDS36113.1 1 1337.0 0.0 2.4 0.1 198.8 0.0 -4,-7 1.0 30 8.0 PRINCIPAL:2 ENSMUSG00000020173 Cobl ENSMUST00000146067 ENSMUSP00000119008 TRANSLATION protein_coding start/stop - 5 216.0 0.0 1.0 0.0 145.1 0.0 -4,-5 0.0002 4 -2.0 MINOR ENSMUSG00000020173 Cobl ENSMUST00000109650 ENSMUSP00000105277 TRANSLATION protein_coding - - 5 1255.0 0.0 2.4 0.1 198.8 0.0 -4,-7 0.2856 29 8.0 ALTERNATIVE:2 ENSMUSG00000020173 Cobl ENSMUST00000172827 ENSMUSP00000133368 TRANSLATION protein_coding start/stop - 3 208.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 5 -2.0 MINOR ENSMUSG00000020173 Cobl ENSMUST00000130572 - NO_TRANSLATION retained_intron ENSMUSG00000020173 Cobl ENSMUST00000109651 ENSMUSP00000105278 TRANSLATION protein_coding - CCDS70144.1 1 1312.0 0.0 2.4 0.1 198.8 0.0 -4,-7 0.6296 29 8.0 ALTERNATIVE:2 ENSMUSG00000020287 Mpg ENSMUST00000142964 ENSMUSP00000118208 TRANSLATION nonsense_mediated_decay - - 1 146.0 0.0 0.6 0.0 0.0 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000020287 Mpg ENSMUST00000144903 - NO_TRANSLATION retained_intron ENSMUSG00000020287 Mpg ENSMUST00000020528 ENSMUSP00000020528 TRANSLATION protein_coding - CCDS24520.1 1 333.0 0.0 2.6 0.0 203.7 0.0 -4,-2 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000020287 Mpg ENSMUST00000138050 ENSMUSP00000121960 TRANSLATION nonsense_mediated_decay - - 1 146.0 0.0 0.6 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020363 Gfpt2 ENSMUST00000130129 - NO_TRANSLATION retained_intron ENSMUSG00000020363 Gfpt2 ENSMUST00000020629 ENSMUSP00000020629 TRANSLATION protein_coding - CCDS24622.1 1 682.0 38.0 13.85 34.0 221.2 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000036545 Adamts2 ENSMUST00000142118 ENSMUSP00000159176 TRANSLATION protein_coding - - 1 1095.0 11.0 6.895 0.0 401.6 0.0 1,-2 0.2559 8 14.0 ALTERNATIVE:2 ENSMUSG00000036545 Adamts2 ENSMUST00000040523 ENSMUSP00000040171 TRANSLATION protein_coding - CCDS24636.1 1 1213.0 11.0 6.895 3.5 401.6 0.0 1,-2 1.0 11 15.0 PRINCIPAL:2 ENSMUSG00000036545 Adamts2 ENSMUST00000127534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036545 Adamts2 ENSMUST00000125988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045532 C1ql1 ENSMUST00000057849 ENSMUSP00000050469 TRANSLATION protein_coding - CCDS25509.1 1 258.0 0.0 1.6 13.4 154.4 0.0 3,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000005198 Polr2a ENSMUST00000071213 ENSMUSP00000071200 TRANSLATION protein_coding - - 5 1932.0 11.0 26.6 0.0 1917.1 0.0 -4,-6 0.334 44 18.0 MINOR ENSMUSG00000005198 Polr2a ENSMUST00000058470 ENSMUSP00000050771 TRANSLATION protein_coding - CCDS70217.1 1 1970.0 11.0 26.6 9.8 1916.4 0.0 -4,-6 1.0 44 20.958 PRINCIPAL:1 ENSMUSG00000005198 Polr2a ENSMUST00000156588 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005198 Polr2a ENSMUST00000151586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018449 Rpain ENSMUST00000018593 ENSMUSP00000018593 TRANSLATION protein_coding - CCDS24969.1 1 219.0 4.0 0.0 7.6 178.7 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000018449 Rpain ENSMUST00000129531 - NO_TRANSLATION retained_intron ENSMUSG00000018449 Rpain ENSMUST00000171254 ENSMUSP00000133243 TRANSLATION nonsense_mediated_decay - - 1 107.0 0.0 0.0 2.0 93.7 0.0 -4,-7 0.0517 - -2.0 MINOR ENSMUSG00000018449 Rpain ENSMUST00000108529 ENSMUSP00000104169 TRANSLATION protein_coding - - 1 93.0 0.0 0.0 0.0 67.9 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000018449 Rpain ENSMUST00000129540 - NO_TRANSLATION retained_intron ENSMUSG00000018449 Rpain ENSMUST00000154430 ENSMUSP00000137113 TRANSLATION nonsense_mediated_decay - - 3 51.0 0.0 0.0 0.0 30.1 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000018449 Rpain ENSMUST00000136665 - NO_TRANSLATION retained_intron ENSMUSG00000018449 Rpain ENSMUST00000167509 ENSMUSP00000127315 TRANSLATION protein_coding - CCDS56791.1 1 172.0 4.0 0.0 2.0 113.3 0.0 -4,-7 0.0602 - 6.38 MINOR ENSMUSG00000018449 Rpain ENSMUST00000126815 - NO_TRANSLATION retained_intron ENSMUSG00000018449 Rpain ENSMUST00000146788 - NO_TRANSLATION retained_intron ENSMUSG00000018449 Rpain ENSMUST00000169965 ENSMUSP00000128903 TRANSLATION protein_coding - CCDS56792.1 1 106.0 0.0 0.0 2.0 94.1 0.0 -4,-7 0.0592 - 1.228 MINOR ENSMUSG00000018449 Rpain ENSMUST00000178822 ENSMUSP00000136592 TRANSLATION protein_coding - CCDS56790.1 1 174.0 4.0 0.0 0.0 113.3 0.0 -4,-7 0.0244 - 6.076 MINOR ENSMUSG00000018449 Rpain ENSMUST00000151608 - NO_TRANSLATION retained_intron ENSMUSG00000000318 Clec10a ENSMUST00000150966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000318 Clec10a ENSMUST00000143298 - NO_TRANSLATION retained_intron ENSMUSG00000000318 Clec10a ENSMUST00000102571 ENSMUSP00000099631 TRANSLATION protein_coding - CCDS24936.1 1 304.0 13.0 7.87 3.2 247.5 2.0 -4,-7 1.0 7 15.0 ALTERNATIVE:2 ENSMUSG00000000318 Clec10a ENSMUST00000178567 ENSMUSP00000136322 TRANSLATION protein_coding stop - 3 57.0 0.0 0.0 0.0 57.2 2.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000318 Clec10a ENSMUST00000144935 ENSMUSP00000136500 TRANSLATION protein_coding stop - 5 214.0 4.0 5.41 0.0 112.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000000318 Clec10a ENSMUST00000000327 ENSMUSP00000000327 TRANSLATION protein_coding - CCDS56784.1 1 305.0 13.0 7.87 3.2 245.2 2.0 -4,-7 0.8905 8 15.0 PRINCIPAL:3 ENSMUSG00000000318 Clec10a ENSMUST00000153959 ENSMUSP00000117772 TRANSLATION protein_coding start - 3 103.0 1.0 2.415 0.0 70.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000318 Clec10a ENSMUST00000180106 - NO_TRANSLATION retained_intron ENSMUSG00000000318 Clec10a ENSMUST00000152635 ENSMUSP00000115739 TRANSLATION protein_coding stop - 3 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000318 Clec10a ENSMUST00000178945 ENSMUSP00000137447 TRANSLATION protein_coding - - 1 308.0 7.0 6.87 0.0 219.9 2.0 -4,-7 0.031 8 6.0 MINOR ENSMUSG00000020849 Ywhae ENSMUST00000153038 - NO_TRANSLATION retained_intron ENSMUSG00000020849 Ywhae ENSMUST00000155057 - NO_TRANSLATION retained_intron ENSMUSG00000020849 Ywhae ENSMUST00000067664 ENSMUSP00000070993 TRANSLATION protein_coding - CCDS25056.1 1 255.0 0.0 5.83 32.9 358.4 0.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000020849 Ywhae ENSMUST00000131398 ENSMUSP00000123504 TRANSLATION protein_coding start/stop - 5 154.0 0.0 2.58 0.0 175.1 0.0 -4,-7 0.0 12 -2.0 MINOR ENSMUSG00000020849 Ywhae ENSMUST00000134745 ENSMUSP00000117877 TRANSLATION nonsense_mediated_decay - - 1 130.0 0.0 2.5 0.0 139.4 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000018800 Abca5 ENSMUST00000043961 ENSMUSP00000047927 TRANSLATION protein_coding - CCDS25591.1 1 1642.0 26.0 10.375 10.3 299.3 19.0 -4,-2 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000018800 Abca5 ENSMUST00000134721 ENSMUSP00000118328 TRANSLATION protein_coding stop - 5 181.0 0.0 0.0 0.0 0.0 2.0 -4,-2 0.0002 2 -2.0 MINOR ENSMUSG00000018800 Abca5 ENSMUST00000127318 - NO_TRANSLATION retained_intron ENSMUSG00000018800 Abca5 ENSMUST00000124714 ENSMUSP00000120708 TRANSLATION protein_coding stop - 1 1194.0 16.0 6.205 0.0 208.0 18.0 -4,-2 0.011 8 -2.0 MINOR ENSMUSG00000018800 Abca5 ENSMUST00000148984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042208 Sanbr ENSMUST00000131612 ENSMUSP00000123000 TRANSLATION protein_coding stop - 5 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042208 Sanbr ENSMUST00000093267 ENSMUSP00000090955 TRANSLATION protein_coding - - 5 572.0 7.0 0.0 9.6 123.4 0.0 -4,-5 0.5656 7 13.86 MINOR ENSMUSG00000042208 Sanbr ENSMUST00000180260 ENSMUSP00000136118 TRANSLATION protein_coding - CCDS36119.1 1 718.0 7.0 0.0 19.5 123.4 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000042208 Sanbr ENSMUST00000043356 ENSMUSP00000044265 TRANSLATION protein_coding - CCDS36119.1 5 718.0 7.0 0.0 19.5 123.4 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000042208 Sanbr ENSMUST00000155903 ENSMUSP00000137799 TRANSLATION nonsense_mediated_decay - - 1 713.0 7.0 0.0 0.0 123.4 0.0 -4,-5 0.1766 7 -2.0 MINOR ENSMUSG00000042208 Sanbr ENSMUST00000141353 ENSMUSP00000121553 TRANSLATION protein_coding stop - 1 189.0 0.0 0.0 0.0 123.4 0.0 -4,-5 0.0262 4 -2.0 MINOR ENSMUSG00000042208 Sanbr ENSMUST00000123909 ENSMUSP00000117103 TRANSLATION protein_coding start - 3 213.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000040365 Trim41 ENSMUST00000140800 ENSMUSP00000121705 TRANSLATION protein_coding stop - 3 161.0 8.0 2.25 0.0 42.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000040365 Trim41 ENSMUST00000131888 ENSMUSP00000119707 TRANSLATION protein_coding start - 3 126.0 0.0 1.948 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040365 Trim41 ENSMUST00000138019 ENSMUSP00000118789 TRANSLATION protein_coding start/stop - 3 157.0 10.0 1.2 0.0 42.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040365 Trim41 ENSMUST00000047145 ENSMUSP00000037055 TRANSLATION protein_coding - CCDS36138.1 1 630.0 16.0 3.948 3.6 202.0 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000037275 Gemin5 ENSMUST00000172035 ENSMUSP00000131842 TRANSLATION protein_coding - CCDS48802.1 1 1503.0 0.0 18.83 0.1 127.1 0.0 -4,-6 0.998 27 8.0 PRINCIPAL:3 ENSMUSG00000037275 Gemin5 ENSMUST00000134953 ENSMUSP00000116600 TRANSLATION protein_coding start - 2 177.0 0.0 3.5 0.0 15.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000037275 Gemin5 ENSMUST00000102711 ENSMUSP00000099772 TRANSLATION protein_coding - - 5 1501.0 0.0 18.83 0.1 127.1 0.0 -4,-6 0.6923 26 8.0 ALTERNATIVE:2 ENSMUSG00000037275 Gemin5 ENSMUST00000035604 ENSMUSP00000036603 TRANSLATION protein_coding - CCDS24723.1 1 1502.0 0.0 18.83 0.1 127.1 0.0 -4,-6 1.0 26 8.0 ALTERNATIVE:2 ENSMUSG00000037275 Gemin5 ENSMUST00000134733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041073 Nacad ENSMUST00000177050 ENSMUSP00000134974 TRANSLATION nonsense_mediated_decay start - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0083 - -2.0 MINOR ENSMUSG00000041073 Nacad ENSMUST00000045713 ENSMUSP00000049490 TRANSLATION protein_coding - CCDS36108.1 1 1504.0 0.0 1.0 0.0 76.7 0.0 -4,0 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000041073 Nacad ENSMUST00000177391 ENSMUSP00000135338 TRANSLATION nonsense_mediated_decay start - 5 258.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 3 -2.0 MINOR ENSMUSG00000007739 Cct4 ENSMUST00000174689 - NO_TRANSLATION retained_intron ENSMUSG00000007739 Cct4 ENSMUST00000173867 ENSMUSP00000133523 TRANSLATION protein_coding - CCDS24474.1 1 539.0 23.0 13.0 27.0 524.5 0.0 -4,-7 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000007739 Cct4 ENSMUST00000174659 ENSMUSP00000133667 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000007739 Cct4 ENSMUST00000145912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007739 Cct4 ENSMUST00000174244 - NO_TRANSLATION retained_intron ENSMUSG00000007739 Cct4 ENSMUST00000174047 ENSMUSP00000134248 TRANSLATION nonsense_mediated_decay - - 5 120.0 5.0 2.5 0.0 71.7 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000007739 Cct4 ENSMUST00000174746 - NO_TRANSLATION retained_intron ENSMUSG00000007739 Cct4 ENSMUST00000020562 ENSMUSP00000020562 TRANSLATION protein_coding - - 5 509.0 22.0 12.0 1.0 436.6 0.0 -4,-7 0.0169 21 10.062 MINOR ENSMUSG00000007739 Cct4 ENSMUST00000173853 ENSMUSP00000133677 TRANSLATION nonsense_mediated_decay - - 3 59.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000049287 Iba57 ENSMUST00000054523 ENSMUSP00000049823 TRANSLATION protein_coding - CCDS24758.1 1 358.0 0.0 2.8 0.0 29.1 0.0 -3,1 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000049287 Iba57 ENSMUST00000137433 ENSMUSP00000114501 TRANSLATION protein_coding stop - 3 215.0 0.0 0.8 0.0 0.0 0.0 -3,1 0.0007 2 -2.0 MINOR ENSMUSG00000049287 Iba57 ENSMUST00000069631 ENSMUSP00000065882 TRANSLATION protein_coding - - 1 172.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000044795 Cyb5d1 ENSMUST00000108660 ENSMUSP00000104300 TRANSLATION protein_coding - - 5 175.0 0.0 2.75 0.0 33.1 0.0 -4,-7 0.0033 2 7.002 MINOR ENSMUSG00000044795 Cyb5d1 ENSMUST00000134903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044795 Cyb5d1 ENSMUST00000051620 ENSMUSP00000059709 TRANSLATION protein_coding - CCDS24892.1 1 228.0 0.0 5.25 7.7 33.1 0.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000001440 Kpnb1 ENSMUST00000001479 ENSMUSP00000001479 TRANSLATION protein_coding - CCDS25316.1 1 876.0 0.0 19.25 29.9 86.2 0.0 -4,-5 1.0 32 16.0 PRINCIPAL:1 ENSMUSG00000001440 Kpnb1 ENSMUST00000132633 - NO_TRANSLATION retained_intron ENSMUSG00000001440 Kpnb1 ENSMUST00000153727 - NO_TRANSLATION retained_intron ENSMUSG00000020330 Hmmr ENSMUST00000020579 ENSMUSP00000020579 TRANSLATION protein_coding - CCDS24548.1 1 794.0 0.0 0.0 0.0 672.5 0.0 -4,-7 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000020330 Hmmr ENSMUST00000156399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020330 Hmmr ENSMUST00000127705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020330 Hmmr ENSMUST00000152749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020280 Pus10 ENSMUST00000109525 ENSMUSP00000105151 TRANSLATION protein_coding - CCDS24479.1 1 527.0 4.0 10.1225 9.5 0.0 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000020280 Pus10 ENSMUST00000143117 ENSMUSP00000117934 TRANSLATION protein_coding stop - 3 139.0 4.0 0.5 0.0 0.0 0.0 -4,-5 0.0068 3 -2.0 MINOR ENSMUSG00000020280 Pus10 ENSMUST00000058163 ENSMUSP00000050395 TRANSLATION protein_coding - CCDS24479.1 1 527.0 4.0 10.1225 9.5 0.0 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000020280 Pus10 ENSMUST00000142287 - NO_TRANSLATION retained_intron ENSMUSG00000020280 Pus10 ENSMUST00000020520 ENSMUSP00000020520 TRANSLATION protein_coding - CCDS24479.1 1 527.0 4.0 10.1225 9.5 0.0 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000020280 Pus10 ENSMUST00000139646 - NO_TRANSLATION retained_intron ENSMUSG00000020280 Pus10 ENSMUST00000136365 - NO_TRANSLATION retained_intron ENSMUSG00000020840 Blmh ENSMUST00000145732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020840 Blmh ENSMUST00000155053 ENSMUSP00000128505 TRANSLATION protein_coding stop - 5 129.0 0.0 4.08 0.0 197.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000020840 Blmh ENSMUST00000155867 - NO_TRANSLATION retained_intron ENSMUSG00000020840 Blmh ENSMUST00000140781 ENSMUSP00000132608 TRANSLATION protein_coding stop - 5 57.0 0.0 1.75 0.0 79.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020840 Blmh ENSMUST00000140193 - NO_TRANSLATION retained_intron ENSMUSG00000020840 Blmh ENSMUST00000146197 ENSMUSP00000118243 TRANSLATION protein_coding stop - 3 209.0 1.0 3.91 0.0 232.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020840 Blmh ENSMUST00000168124 ENSMUSP00000130370 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 1.0 0.0 44.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020840 Blmh ENSMUST00000125145 ENSMUSP00000132739 TRANSLATION protein_coding stop - 3 179.0 0.0 4.33 0.0 269.8 0.0 -4,-5 0.0007 13 -2.0 MINOR ENSMUSG00000020840 Blmh ENSMUST00000021197 ENSMUSP00000021197 TRANSLATION protein_coding - CCDS25073.1 1 455.0 2.0 10.91 27.8 691.9 0.0 -4,-5 1.0 26 18.0 PRINCIPAL:1 ENSMUSG00000004798 Ulk2 ENSMUST00000157049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004798 Ulk2 ENSMUST00000004920 ENSMUSP00000004920 TRANSLATION protein_coding - CCDS24820.1 1 1037.0 16.0 8.38 9.1 317.7 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000004798 Ulk2 ENSMUST00000129025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044949 Ubtd2 ENSMUST00000051053 ENSMUSP00000056765 TRANSLATION protein_coding - CCDS24527.1 1 234.0 0.0 2.6 22.7 181.4 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000055609 Hba-x ENSMUST00000020531 ENSMUSP00000020531 TRANSLATION protein_coding - CCDS24522.1 1 142.0 20.0 3.0 27.7 91.2 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000055609 Hba-x ENSMUST00000145569 ENSMUSP00000118167 TRANSLATION protein_coding start - 3 156.0 20.0 2.1 0.0 69.6 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000040554 Aipl1 ENSMUST00000048207 ENSMUSP00000036279 TRANSLATION protein_coding - CCDS24976.1 1 328.0 0.0 5.8 17.6 28.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040554 Aipl1 ENSMUST00000059082 ENSMUSP00000061957 TRANSLATION nonsense_mediated_decay - - 2 179.0 0.0 3.0 0.0 28.4 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000020332 Meikin ENSMUST00000094193 ENSMUSP00000091745 TRANSLATION protein_coding - CCDS48798.1 1 434.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:1 ENSMUSG00000020332 Meikin ENSMUST00000143919 - NO_TRANSLATION retained_intron ENSMUSG00000033389 Arhgap44 ENSMUST00000093001 ENSMUSP00000090680 TRANSLATION protein_coding - - 2 211.0 0.0 1.857 0.0 150.4 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000033389 Arhgap44 ENSMUST00000047463 ENSMUSP00000039139 TRANSLATION protein_coding - CCDS36180.1 1 764.0 0.0 6.572 5.8 377.9 0.0 -4,-2 0.9764 11 10.001 ALTERNATIVE:1 ENSMUSG00000033389 Arhgap44 ENSMUST00000130420 ENSMUSP00000115612 TRANSLATION protein_coding start - 5 645.0 0.0 5.065 0.0 248.8 0.0 -4,-5 0.0007 9 -2.0 MINOR ENSMUSG00000033389 Arhgap44 ENSMUST00000093002 ENSMUSP00000090681 TRANSLATION protein_coding - - 5 814.0 0.0 6.572 8.2 377.9 0.0 -4,-2 1.0 11 11.0 PRINCIPAL:4 ENSMUSG00000020916 Krt36 ENSMUST00000107416 ENSMUSP00000103039 TRANSLATION protein_coding - CCDS48929.1 5 473.0 0.0 3.91 4.0 366.2 0.0 -4,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000038290 Smg6 ENSMUST00000135522 - NO_TRANSLATION retained_intron ENSMUSG00000038290 Smg6 ENSMUST00000130145 ENSMUSP00000120229 TRANSLATION nonsense_mediated_decay start - 1 356.0 0.0 5.37 0.0 164.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000038290 Smg6 ENSMUST00000045281 ENSMUSP00000043555 TRANSLATION protein_coding - CCDS25039.1 1 1418.0 0.0 13.1975 10.2 353.9 0.0 -4,-6 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000038290 Smg6 ENSMUST00000142038 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038290 Smg6 ENSMUST00000153226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038290 Smg6 ENSMUST00000140197 ENSMUSP00000120060 TRANSLATION protein_coding start/stop - 5 238.0 0.0 3.5 0.0 45.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000061984 Or1e32 ENSMUST00000144724 ENSMUSP00000123649 TRANSLATION protein_coding - CCDS25017.1 2 312.0 0.0 1.0 10.5 196.8 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061984 Or1e32 ENSMUST00000118463 ENSMUSP00000113118 TRANSLATION protein_coding - CCDS25017.1 2 312.0 0.0 1.0 10.5 196.8 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018697 Aatf ENSMUST00000127042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018697 Aatf ENSMUST00000141093 - NO_TRANSLATION retained_intron ENSMUSG00000018697 Aatf ENSMUST00000018841 ENSMUSP00000018841 TRANSLATION protein_coding - CCDS25186.1 1 526.0 0.0 0.0 0.1 230.2 0.0 -4,-5 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000018697 Aatf ENSMUST00000148434 - NO_TRANSLATION retained_intron ENSMUSG00000061650 Med9 ENSMUST00000081980 ENSMUSP00000080641 TRANSLATION protein_coding - CCDS24780.1 1 142.0 0.0 1.2 7.9 77.5 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000110344 Smim36 ENSMUST00000124877 ENSMUSP00000147478 TRANSLATION protein_coding - - 1 93.0 0.0 0.6 1.0 0.0 1.0 -3,-5 0.6717 - 6.0 PRINCIPAL:1 ENSMUSG00000110344 Smim36 ENSMUST00000134929 ENSMUSP00000147615 TRANSLATION protein_coding,RT - - 1 93.0 0.0 0.6 1.0 0.0 1.0 -3,-5 0.6717 - -2.0 MINOR ENSMUSG00000110344 Smim36 ENSMUST00000153734 ENSMUSP00000148024 TRANSLATION protein_coding,RT - - 5 93.0 0.0 0.6 1.0 0.0 1.0 -3,-5 0.6717 - -2.0 MINOR ENSMUSG00000034947 Tmem106a ENSMUST00000100403 ENSMUSP00000097971 TRANSLATION protein_coding - CCDS25476.1 5 261.0 3.0 4.5 9.6 366.9 1.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000034947 Tmem106a ENSMUST00000128659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034947 Tmem106a ENSMUST00000039581 ENSMUSP00000045832 TRANSLATION protein_coding - CCDS25476.1 1 261.0 3.0 4.5 9.6 366.9 1.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000034947 Tmem106a ENSMUST00000143045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034947 Tmem106a ENSMUST00000107194 ENSMUSP00000102812 TRANSLATION protein_coding stop - 2 171.0 3.0 2.0 0.0 235.9 1.0 -4,-6 0.0015 1 -2.0 MINOR ENSMUSG00000034947 Tmem106a ENSMUST00000128614 ENSMUSP00000122218 TRANSLATION protein_coding stop - 3 156.0 3.0 1.5 0.0 213.3 1.0 -4,-6 0.0015 1 -2.0 MINOR ENSMUSG00000025141 Myadml2 ENSMUST00000145047 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025141 Myadml2 ENSMUST00000026134 ENSMUSP00000026134 TRANSLATION protein_coding - CCDS56828.1 1 153.0 0.0 0.4 0.0 38.4 2.0 -4,-7 0.0267 - 5.616 MINOR ENSMUSG00000025141 Myadml2 ENSMUST00000239158 ENSMUSP00000158986 TRANSLATION protein_coding - - - 307.0 0.0 0.8 10.5 88.1 7.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000038721 Hoxb7 ENSMUST00000049352 ENSMUSP00000040121 TRANSLATION protein_coding - CCDS25294.1 1 217.0 0.0 1.0 6.0 75.3 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038721 Hoxb7 ENSMUST00000151596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038807 Rap1gap2 ENSMUST00000238457 ENSMUSP00000158689 TRANSLATION protein_coding - - - 772.0 0.0 8.15 6.8 216.9 0.0 -4,-1 0.6953 17 10.289 ALTERNATIVE:1 ENSMUSG00000038807 Rap1gap2 ENSMUST00000208896 ENSMUSP00000146728 TRANSLATION protein_coding stop - 3 173.0 0.0 0.6 0.0 0.0 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000038807 Rap1gap2 ENSMUST00000102521 ENSMUSP00000099580 TRANSLATION protein_coding - CCDS25032.1 5 712.0 0.0 8.15 8.6 216.9 0.0 -4,-6 1.0 17 11.0 PRINCIPAL:2 ENSMUSG00000038807 Rap1gap2 ENSMUST00000123440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038807 Rap1gap2 ENSMUST00000145524 ENSMUSP00000117290 TRANSLATION protein_coding stop - 5 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038807 Rap1gap2 ENSMUST00000047488 ENSMUSP00000040180 TRANSLATION nonsense_mediated_decay - - 1 758.0 0.0 8.15 0.0 216.9 0.0 -4,-1 0.0921 16 -2.0 MINOR ENSMUSG00000018906 P4ha2 ENSMUST00000135653 ENSMUSP00000119861 TRANSLATION protein_coding stop - 2 112.0 0.0 2.48 0.0 77.7 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000018906 P4ha2 ENSMUST00000125132 ENSMUSP00000121543 TRANSLATION nonsense_mediated_decay - - 3 42.0 0.0 0.4 0.0 0.0 0.0 4,-1 0.0018 - -2.0 MINOR ENSMUSG00000018906 P4ha2 ENSMUST00000151218 ENSMUSP00000118384 TRANSLATION protein_coding stop - 5 128.0 0.0 2.98 0.0 84.0 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000018906 P4ha2 ENSMUST00000174616 ENSMUSP00000133275 TRANSLATION protein_coding - CCDS48797.1 5 535.0 7.0 11.98 6.8 186.3 0.0 4,-1 0.9745 10 15.4 ALTERNATIVE:1 ENSMUSG00000018906 P4ha2 ENSMUST00000138477 ENSMUSP00000121119 TRANSLATION protein_coding stop - 5 158.0 0.0 3.73 0.0 132.0 0.0 4,-1 0.0 2 -2.0 MINOR ENSMUSG00000018906 P4ha2 ENSMUST00000141258 ENSMUSP00000118608 TRANSLATION nonsense_mediated_decay start - 5 25.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018906 P4ha2 ENSMUST00000093107 ENSMUSP00000091749 TRANSLATION protein_coding - CCDS48797.1 1 535.0 7.0 11.98 6.8 186.3 0.0 4,-1 0.9745 10 15.4 ALTERNATIVE:1 ENSMUSG00000018906 P4ha2 ENSMUST00000126840 ENSMUSP00000121955 TRANSLATION protein_coding stop - 5 108.0 0.0 2.48 0.0 76.4 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000018906 P4ha2 ENSMUST00000135596 - NO_TRANSLATION retained_intron ENSMUSG00000018906 P4ha2 ENSMUST00000155299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018906 P4ha2 ENSMUST00000125651 - NO_TRANSLATION retained_intron ENSMUSG00000018906 P4ha2 ENSMUST00000142583 - NO_TRANSLATION retained_intron ENSMUSG00000018906 P4ha2 ENSMUST00000139315 - NO_TRANSLATION retained_intron ENSMUSG00000018906 P4ha2 ENSMUST00000129499 ENSMUSP00000115245 TRANSLATION protein_coding stop - 5 52.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0 - -2.0 MINOR ENSMUSG00000018906 P4ha2 ENSMUST00000019050 ENSMUSP00000019050 TRANSLATION protein_coding - CCDS24691.1 5 537.0 7.0 12.28 5.3 187.0 0.0 4,-1 1.0 10 15.482 PRINCIPAL:4 ENSMUSG00000035557 Krt17 ENSMUST00000080893 ENSMUSP00000079699 TRANSLATION protein_coding - CCDS25415.1 1 433.0 0.0 4.25 6.3 399.3 0.0 -4,-2 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000006574 Slc4a1 ENSMUST00000151050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006574 Slc4a1 ENSMUST00000145636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006574 Slc4a1 ENSMUST00000128405 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006574 Slc4a1 ENSMUST00000006749 ENSMUSP00000006749 TRANSLATION protein_coding - CCDS25496.1 1 929.0 0.0 12.58 1.9 916.1 0.0 -4,-5 1.0 15 13.0 PRINCIPAL:1 ENSMUSG00000006574 Slc4a1 ENSMUST00000149993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000869 Il4 ENSMUST00000000889 ENSMUSP00000000889 TRANSLATION protein_coding - CCDS24682.1 1 140.0 0.0 3.15 0.0 136.0 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000000869 Il4 ENSMUST00000150568 ENSMUSP00000134414 TRANSLATION protein_coding - - 1 45.0 0.0 1.25 0.0 53.1 0.0 -4,-7 0.0 - 3.228 MINOR ENSMUSG00000000869 Il4 ENSMUST00000140684 ENSMUSP00000133617 TRANSLATION protein_coding - - 2 45.0 0.0 1.25 0.0 53.1 0.0 -4,-7 0.0 - 3.228 MINOR ENSMUSG00000000869 Il4 ENSMUST00000127858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044084 Spem2 ENSMUST00000056941 ENSMUSP00000051204 TRANSLATION protein_coding - CCDS24912.1 1 503.0 0.0 1.15 0.1 391.9 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000086545 Lrrc3c ENSMUST00000142268 ENSMUSP00000147537 TRANSLATION protein_coding - CCDS83891.1 3 255.0 0.0 0.6 0.0 61.1 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000034187 Nsf ENSMUST00000127813 - NO_TRANSLATION retained_intron ENSMUSG00000034187 Nsf ENSMUST00000133774 ENSMUSP00000133591 TRANSLATION protein_coding stop - 5 210.0 3.0 4.65 0.0 70.7 0.0 -4,-2 0.0 12 -2.0 MINOR ENSMUSG00000034187 Nsf ENSMUST00000150516 - NO_TRANSLATION retained_intron ENSMUSG00000034187 Nsf ENSMUST00000145126 - NO_TRANSLATION retained_intron ENSMUSG00000034187 Nsf ENSMUST00000140394 - NO_TRANSLATION retained_intron ENSMUSG00000034187 Nsf ENSMUST00000149642 ENSMUSP00000133603 TRANSLATION protein_coding stop - 5 76.0 0.0 2.25 0.0 48.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000034187 Nsf ENSMUST00000107009 - NO_TRANSLATION retained_intron ENSMUSG00000034187 Nsf ENSMUST00000040443 - NO_TRANSLATION retained_intron ENSMUSG00000034187 Nsf ENSMUST00000146036 - NO_TRANSLATION retained_intron ENSMUSG00000034187 Nsf ENSMUST00000103075 ENSMUSP00000099364 TRANSLATION protein_coding - CCDS25524.1 1 744.0 27.0 16.48 14.5 281.6 0.0 -4,-6 1.0 43 22.0 PRINCIPAL:1 ENSMUSG00000054079 Utp18 ENSMUST00000134807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054079 Utp18 ENSMUST00000130797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054079 Utp18 ENSMUST00000066888 ENSMUSP00000068103 TRANSLATION protein_coding - CCDS25245.1 1 552.0 0.0 7.39 0.1 0.0 0.0 -4,-7 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000060170 Or2y6 ENSMUST00000075844 ENSMUSP00000075241 TRANSLATION protein_coding - CCDS24668.1 - 311.0 0.0 1.0 10.7 161.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018442 Derl2 ENSMUST00000171041 ENSMUSP00000127568 TRANSLATION protein_coding - CCDS70235.1 1 165.0 0.0 3.705 1.7 162.9 2.0 -3,-6 0.0247 - 2.754 MINOR ENSMUSG00000018442 Derl2 ENSMUST00000132198 ENSMUSP00000136401 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000018442 Derl2 ENSMUST00000140712 - NO_TRANSLATION retained_intron ENSMUSG00000018442 Derl2 ENSMUST00000018586 ENSMUSP00000136261 TRANSLATION nonsense_mediated_decay - - 3 83.0 0.0 2.0 0.0 83.4 2.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000018442 Derl2 ENSMUST00000143850 ENSMUSP00000117052 TRANSLATION protein_coding - CCDS24972.1 1 239.0 0.0 5.705 34.9 251.7 4.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000018442 Derl2 ENSMUST00000108523 ENSMUSP00000104163 TRANSLATION protein_coding - - 1 239.0 0.0 5.705 4.0 251.7 4.0 -4,-7 0.3964 1 12.352 MINOR ENSMUSG00000018442 Derl2 ENSMUST00000131340 ENSMUSP00000135984 TRANSLATION nonsense_mediated_decay start - 3 65.0 0.0 0.75 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000049291 Prss38 ENSMUST00000061481 ENSMUSP00000052010 TRANSLATION protein_coding - CCDS36170.1 1 322.0 3.0 2.8 0.4 198.3 0.0 2,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000046474 Krtap4-16 ENSMUST00000107437 ENSMUSP00000103060 TRANSLATION protein_coding - CCDS36326.1 - 202.0 0.0 0.0 0.0 102.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000032807 Alox12b ENSMUST00000036424 ENSMUSP00000035250 TRANSLATION protein_coding - CCDS24885.1 1 701.0 5.0 11.34 10.2 78.9 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000009079 Ewsr1 ENSMUST00000079949 ENSMUSP00000078867 TRANSLATION protein_coding - CCDS24396.1 1 655.0 4.0 4.7396 3.6 86.0 0.0 -4,-5 1.0 10 12.885 PRINCIPAL:2 ENSMUSG00000009079 Ewsr1 ENSMUST00000130118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009079 Ewsr1 ENSMUST00000144238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009079 Ewsr1 ENSMUST00000139886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009079 Ewsr1 ENSMUST00000093365 ENSMUSP00000091057 TRANSLATION protein_coding - - 5 354.0 0.0 0.0 9.8 0.0 0.0 -4,-5 0.8832 1 3.0 MINOR ENSMUSG00000009079 Ewsr1 ENSMUST00000063232 ENSMUSP00000066827 TRANSLATION protein_coding - - 1 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000009079 Ewsr1 ENSMUST00000151847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009079 Ewsr1 ENSMUST00000141002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009079 Ewsr1 ENSMUST00000150168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009079 Ewsr1 ENSMUST00000102930 ENSMUSP00000099994 TRANSLATION protein_coding - - 5 661.0 4.0 4.7396 2.5 86.0 0.0 -4,-5 0.4903 10 12.51 ALTERNATIVE:2 ENSMUSG00000009079 Ewsr1 ENSMUST00000073308 ENSMUSP00000073034 TRANSLATION protein_coding - CCDS70131.1 1 618.0 4.0 4.2 0.0 86.0 0.0 -4,-5 0.0828 10 10.92 MINOR ENSMUSG00000009079 Ewsr1 ENSMUST00000151497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009079 Ewsr1 ENSMUST00000130060 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020447 Npc1l1 ENSMUST00000004505 ENSMUSP00000004505 TRANSLATION protein_coding - CCDS24413.1 1 1333.0 0.0 15.62 2.1 525.0 0.0 4,-1 1.0 21 13.0 PRINCIPAL:1 ENSMUSG00000020427 Igfbp3 ENSMUST00000020702 ENSMUSP00000020702 TRANSLATION protein_coding - CCDS24428.1 1 292.0 0.0 2.04 6.5 106.9 0.0 2,-3 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000020427 Igfbp3 ENSMUST00000135887 ENSMUSP00000131670 TRANSLATION protein_coding - CCDS24428.1 1 292.0 0.0 2.04 6.5 106.9 0.0 2,-3 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000059279 Or2t43 ENSMUST00000215322 ENSMUSP00000150143 TRANSLATION protein_coding - CCDS48805.1 5 314.0 0.0 1.0 1.1 161.2 7.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000059279 Or2t43 ENSMUST00000217009 ENSMUSP00000150268 TRANSLATION protein_coding - CCDS48805.1 5 314.0 0.0 1.0 1.1 161.2 7.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000059279 Or2t43 ENSMUST00000081102 ENSMUSP00000079881 TRANSLATION protein_coding - CCDS48805.1 - 314.0 0.0 1.0 1.1 161.2 7.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000059279 Or2t43 ENSMUST00000216758 ENSMUSP00000150140 TRANSLATION protein_coding - CCDS48805.1 5 314.0 0.0 1.0 1.1 161.2 7.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000070394 Tmem256 ENSMUST00000128281 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070394 Tmem256 ENSMUST00000133967 ENSMUSP00000114883 TRANSLATION protein_coding start - 2 105.0 0.0 2.08 0.0 54.9 3.0 -4,-2 0.0082 1 -2.0 MINOR ENSMUSG00000070394 Tmem256 ENSMUST00000139085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000070394 Tmem256 ENSMUST00000094065 ENSMUSP00000091608 TRANSLATION protein_coding - CCDS24915.1 1 113.0 0.0 2.83 7.1 61.7 3.0 0,3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000070394 Tmem256 ENSMUST00000156556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063116 Or3a1 ENSMUST00000213831 ENSMUSP00000150765 TRANSLATION protein_coding - CCDS25030.1 5 315.0 0.0 1.0 12.5 178.6 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063116 Or3a1 ENSMUST00000214490 ENSMUSP00000150291 TRANSLATION protein_coding - CCDS25030.1 5 315.0 0.0 1.0 12.5 178.6 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063116 Or3a1 ENSMUST00000052254 ENSMUSP00000050456 TRANSLATION protein_coding - CCDS25030.1 - 315.0 0.0 1.0 12.5 178.6 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000004837 Grap ENSMUST00000155380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004837 Grap ENSMUST00000004959 ENSMUSP00000004959 TRANSLATION protein_coding - CCDS24817.1 1 217.0 0.0 4.55 36.9 195.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020483 Dynll2 ENSMUST00000146941 ENSMUSP00000119655 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 1.0 0.0 49.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020483 Dynll2 ENSMUST00000178105 ENSMUSP00000136241 TRANSLATION protein_coding - CCDS36272.1 1 89.0 0.0 2.0 36.9 148.1 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020483 Dynll2 ENSMUST00000107923 ENSMUSP00000103556 TRANSLATION protein_coding - CCDS36272.1 3 89.0 0.0 2.0 36.9 148.1 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020483 Dynll2 ENSMUST00000020775 ENSMUSP00000020775 TRANSLATION protein_coding - CCDS36272.1 1 89.0 0.0 2.0 36.9 148.1 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000040328 Or2v1 ENSMUST00000203149 ENSMUSP00000145429 TRANSLATION protein_coding - - 1 315.0 0.0 1.6 9.9 171.1 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040328 Or2v1 ENSMUST00000102785 ENSMUSP00000099846 TRANSLATION protein_coding - CCDS24597.1 1 283.0 0.0 1.0 0.0 171.1 6.0 1,-3 0.2535 - 9.75 MINOR ENSMUSG00000040328 Or2v1 ENSMUST00000239127 ENSMUSP00000159088 TRANSLATION protein_coding - CCDS24597.1 - 283.0 0.0 1.0 0.0 171.1 6.0 1,-3 0.2535 - 9.75 MINOR ENSMUSG00000040328 Or2v1 ENSMUST00000203412 - NO_TRANSLATION retained_intron ENSMUSG00000040328 Or2v1 ENSMUST00000238881 ENSMUSP00000158965 TRANSLATION protein_coding - - - 315.0 0.0 1.6 9.9 171.1 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040328 Or2v1 ENSMUST00000203810 ENSMUSP00000144951 TRANSLATION protein_coding - - 5 315.0 0.0 1.6 9.9 171.1 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033044 Dhrs7c ENSMUST00000123862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033044 Dhrs7c ENSMUST00000142686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033044 Dhrs7c ENSMUST00000168612 ENSMUSP00000130924 TRANSLATION protein_coding - CCDS48822.1 5 311.0 30.0 4.8 26.5 136.4 0.0 1,-3 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000033044 Dhrs7c ENSMUST00000149722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033044 Dhrs7c ENSMUST00000135830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020128 Vps54 ENSMUST00000006221 ENSMUSP00000006221 TRANSLATION protein_coding - CCDS24463.1 1 977.0 0.0 4.35 22.2 203.6 0.0 -4,-7 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000020128 Vps54 ENSMUST00000132017 ENSMUSP00000116739 TRANSLATION protein_coding start - 5 815.0 0.0 4.35 0.0 203.6 0.0 -4,-5 0.0569 6 -2.0 MINOR ENSMUSG00000020128 Vps54 ENSMUST00000109578 ENSMUSP00000105206 TRANSLATION protein_coding - CCDS70147.1 1 965.0 0.0 4.35 9.4 203.6 0.0 -4,-7 0.7975 9 13.584 MINOR ENSMUSG00000020128 Vps54 ENSMUST00000153411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020128 Vps54 ENSMUST00000132146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020128 Vps54 ENSMUST00000153159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020128 Vps54 ENSMUST00000143932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035085 1700020L24Rik ENSMUST00000188702 ENSMUSP00000140664 TRANSLATION protein_coding start - 3 111.0 0.0 0.0 0.0 140.9 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000035085 1700020L24Rik ENSMUST00000037378 ENSMUSP00000042098 TRANSLATION protein_coding - CCDS25165.1 1 189.0 2.0 0.0 0.4 285.5 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000055546 Timd4 ENSMUST00000068877 ENSMUSP00000069456 TRANSLATION protein_coding - CCDS36137.1 1 343.0 3.0 1.0 0.0 50.9 0.0 3,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000000204 Slfn4 ENSMUST00000215472 ENSMUSP00000150793 TRANSLATION protein_coding - - 1 209.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0015 - 0.0 MINOR ENSMUSG00000000204 Slfn4 ENSMUST00000167596 ENSMUSP00000132595 TRANSLATION protein_coding - CCDS25158.1 1 602.0 0.0 0.48 0.0 39.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000000204 Slfn4 ENSMUST00000000208 ENSMUSP00000000208 TRANSLATION protein_coding - CCDS25158.1 1 602.0 0.0 0.48 0.0 39.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000003581 Rnf215 ENSMUST00000127165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003581 Rnf215 ENSMUST00000145705 ENSMUSP00000117540 TRANSLATION protein_coding stop - 5 217.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0011 - -2.0 MINOR ENSMUSG00000003581 Rnf215 ENSMUST00000003677 ENSMUSP00000003677 TRANSLATION protein_coding - CCDS24378.1 1 379.0 8.0 1.466 0.4 40.4 1.0 -1,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000003581 Rnf215 ENSMUST00000124670 ENSMUSP00000114532 TRANSLATION protein_coding start/stop - 5 148.0 0.0 0.0 0.0 0.0 0.0 -1,-2 0.0 - -2.0 MINOR ENSMUSG00000017615 Tnfaip1 ENSMUST00000017759 ENSMUSP00000017759 TRANSLATION protein_coding - CCDS25110.1 1 316.0 0.0 5.0 16.9 73.4 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000017615 Tnfaip1 ENSMUST00000108277 ENSMUSP00000103912 TRANSLATION protein_coding - CCDS25110.1 1 316.0 0.0 5.0 16.9 73.4 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000043880 Or11l3 ENSMUST00000203173 ENSMUSP00000145459 TRANSLATION protein_coding start/stop - 1 137.0 0.0 1.0 0.0 0.0 1.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000043880 Or11l3 ENSMUST00000214132 ENSMUSP00000151137 TRANSLATION protein_coding - CCDS24737.1 5 323.0 0.0 3.0 5.4 183.8 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043880 Or11l3 ENSMUST00000070804 ENSMUSP00000068147 TRANSLATION protein_coding - CCDS24737.1 - 323.0 0.0 3.0 5.4 183.8 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020349 Ppp2ca ENSMUST00000142939 - NO_TRANSLATION retained_intron ENSMUSG00000020349 Ppp2ca ENSMUST00000020608 ENSMUSP00000020608 TRANSLATION protein_coding - CCDS24666.1 1 309.0 10.0 6.75 34.9 119.9 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000020752 Recql5 ENSMUST00000140174 ENSMUSP00000136506 TRANSLATION nonsense_mediated_decay - - 1 294.0 14.0 4.0 0.0 74.9 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000020752 Recql5 ENSMUST00000131578 ENSMUSP00000136178 TRANSLATION nonsense_mediated_decay start - 5 220.0 4.0 3.54 0.0 42.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020752 Recql5 ENSMUST00000147172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020752 Recql5 ENSMUST00000134208 ENSMUSP00000137157 TRANSLATION nonsense_mediated_decay - - 1 305.0 15.0 6.998 0.0 83.7 0.0 -4,-7 0.0015 4 -2.0 MINOR ENSMUSG00000020752 Recql5 ENSMUST00000021097 ENSMUSP00000021097 TRANSLATION protein_coding - CCDS25650.1 1 982.0 19.0 12.35 0.1 477.7 0.0 -4,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000020752 Recql5 ENSMUST00000136774 - NO_TRANSLATION retained_intron ENSMUSG00000020752 Recql5 ENSMUST00000144824 - NO_TRANSLATION retained_intron ENSMUSG00000020752 Recql5 ENSMUST00000156776 - NO_TRANSLATION retained_intron ENSMUSG00000037145 Lypd8l ENSMUST00000048801 ENSMUSP00000039283 TRANSLATION protein_coding - CCDS24736.1 1 220.0 0.0 4.0 0.0 27.2 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000037145 Lypd8l ENSMUST00000108821 ENSMUSP00000104449 TRANSLATION protein_coding - CCDS24736.1 5 220.0 0.0 4.0 0.0 27.2 0.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000037145 Lypd8l ENSMUST00000126695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039084 Chad ENSMUST00000040418 ENSMUSP00000047844 TRANSLATION protein_coding - CCDS25260.1 1 358.0 0.0 3.0 4.1 191.3 0.0 3,-2 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000020733 Nherf1 ENSMUST00000021077 ENSMUSP00000021077 TRANSLATION protein_coding - CCDS36370.1 1 355.0 0.0 5.5 6.6 255.5 0.0 -4,-5 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000002059 Rab34 ENSMUST00000148603 - NO_TRANSLATION retained_intron ENSMUSG00000002059 Rab34 ENSMUST00000207728 ENSMUSP00000146997 TRANSLATION protein_coding - - 2 188.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 2 0.0 MINOR ENSMUSG00000002059 Rab34 ENSMUST00000002128 ENSMUSP00000002128 TRANSLATION protein_coding - CCDS25094.1 1 259.0 24.0 7.58 29.2 153.2 0.0 -4,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000002059 Rab34 ENSMUST00000108322 ENSMUSP00000103958 TRANSLATION protein_coding - CCDS25094.1 1 259.0 24.0 7.58 29.2 153.2 0.0 -4,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000002059 Rab34 ENSMUST00000154542 - NO_TRANSLATION retained_intron ENSMUSG00000002059 Rab34 ENSMUST00000156435 ENSMUSP00000122848 TRANSLATION protein_coding start - 3 199.0 24.0 5.58 0.0 144.3 0.0 -4,-6 0.0036 6 -2.0 MINOR ENSMUSG00000002059 Rab34 ENSMUST00000126864 - NO_TRANSLATION retained_intron ENSMUSG00000002059 Rab34 ENSMUST00000150941 ENSMUSP00000123033 TRANSLATION protein_coding start/stop - 5 265.0 24.0 6.8925 0.0 153.2 0.0 -4,-1 0.0853 7 -2.0 MINOR ENSMUSG00000002059 Rab34 ENSMUST00000056241 ENSMUSP00000059769 TRANSLATION protein_coding - - 5 251.0 21.0 7.25 29.2 133.2 0.0 -4,-2 0.7355 7 18.142 MINOR ENSMUSG00000038845 Phb ENSMUST00000127031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038845 Phb ENSMUST00000123001 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038845 Phb ENSMUST00000036374 ENSMUSP00000047536 TRANSLATION protein_coding stop - 5 207.0 0.0 5.0 0.0 95.8 0.0 -2,-5 0.0029 11 -2.0 MINOR ENSMUSG00000038845 Phb ENSMUST00000123071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038845 Phb ENSMUST00000125172 ENSMUSP00000119603 TRANSLATION protein_coding - CCDS25280.1 1 272.0 0.0 6.0 34.9 95.8 0.0 -2,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000018339 Gpx3 ENSMUST00000149324 ENSMUSP00000119882 TRANSLATION protein_coding stop - 3 217.0 0.0 3.25 0.0 133.0 0.0 4,-1 0.0257 4 -2.0 MINOR ENSMUSG00000018339 Gpx3 ENSMUST00000125094 ENSMUSP00000119165 TRANSLATION protein_coding stop - 3 199.0 0.0 4.5 0.0 144.4 0.0 4,-1 0.0418 4 -2.0 MINOR ENSMUSG00000018339 Gpx3 ENSMUST00000082430 ENSMUSP00000081011 TRANSLATION protein_coding - CCDS24703.1 1 226.0 0.0 5.25 10.3 144.4 0.0 4,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000020395 Itk ENSMUST00000109237 ENSMUSP00000104860 TRANSLATION protein_coding - CCDS70169.1 1 625.0 35.0 13.45 14.4 528.0 0.0 -4,-7 0.9846 1 18.0 ALTERNATIVE:1 ENSMUSG00000020395 Itk ENSMUST00000155991 - NO_TRANSLATION retained_intron ENSMUSG00000020395 Itk ENSMUST00000101306 ENSMUSP00000098864 TRANSLATION protein_coding - CCDS70168.1 1 264.0 17.0 6.5 0.0 149.3 0.0 -4,-7 0.0022 1 1.4 MINOR ENSMUSG00000020395 Itk ENSMUST00000020664 ENSMUSP00000020664 TRANSLATION protein_coding - CCDS24575.2 1 619.0 35.0 13.45 14.4 534.2 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:4 ENSMUSG00000020912 Krt12 ENSMUST00000017741 ENSMUSP00000017741 TRANSLATION protein_coding - CCDS36306.1 1 487.0 0.0 4.316 2.9 360.5 0.0 -4,0 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000003934 Efnb3 ENSMUST00000004036 ENSMUSP00000004036 TRANSLATION protein_coding - CCDS24896.1 1 340.0 0.0 2.6 10.7 145.5 0.0 1,-3 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000056752 Dnah9 ENSMUST00000080665 ENSMUSP00000079494 TRANSLATION protein_coding - CCDS36182.1 5 4484.0 60.0 51.078 3.3 4396.8 0.0 -4,-5 1.0 16 19.0 PRINCIPAL:1 ENSMUSG00000056752 Dnah9 ENSMUST00000142836 - NO_TRANSLATION retained_intron ENSMUSG00000056752 Dnah9 ENSMUST00000152386 ENSMUSP00000116499 TRANSLATION protein_coding start - 5 1958.0 31.0 25.01 0.0 2701.8 0.0 -4,-2 0.1006 6 -2.0 MINOR ENSMUSG00000056752 Dnah9 ENSMUST00000130739 ENSMUSP00000116227 TRANSLATION protein_coding start/stop - 5 279.0 0.0 2.84 0.0 432.9 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000056752 Dnah9 ENSMUST00000108691 ENSMUSP00000104331 TRANSLATION protein_coding - - 1 457.0 0.0 4.795 0.0 416.5 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000056752 Dnah9 ENSMUST00000136124 - NO_TRANSLATION retained_intron ENSMUSG00000055333 Fat2 ENSMUST00000108864 ENSMUSP00000104492 TRANSLATION protein_coding - CCDS36157.1 5 4351.0 212.0 8.063 5.8 1566.6 0.0 4,-1 1.0 31 20.0 PRINCIPAL:1 ENSMUSG00000055333 Fat2 ENSMUST00000068853 ENSMUSP00000067556 TRANSLATION protein_coding - CCDS36157.1 5 4351.0 212.0 8.063 5.8 1566.6 0.0 4,-1 1.0 31 20.0 PRINCIPAL:1 ENSMUSG00000018666 Cbx1 ENSMUST00000018810 ENSMUSP00000018810 TRANSLATION protein_coding - - 1 138.0 0.0 3.0 0.0 97.8 0.0 -4,-5 0.0003 2 5.532 MINOR ENSMUSG00000018666 Cbx1 ENSMUST00000134585 ENSMUSP00000137834 TRANSLATION nonsense_mediated_decay - - 1 138.0 0.0 3.0 0.0 97.8 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000018666 Cbx1 ENSMUST00000093943 ENSMUSP00000091475 TRANSLATION protein_coding - CCDS25303.1 1 185.0 0.0 4.0 19.2 172.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000018666 Cbx1 ENSMUST00000079702 ENSMUSP00000078640 TRANSLATION protein_coding - - 1 150.0 0.0 3.05 0.0 102.2 0.0 -4,-5 0.0 2 5.892 MINOR ENSMUSG00000018666 Cbx1 ENSMUST00000141257 - NO_TRANSLATION retained_intron ENSMUSG00000020921 Tmem101 ENSMUST00000143986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020921 Tmem101 ENSMUST00000136434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020921 Tmem101 ENSMUST00000021296 ENSMUSP00000021296 TRANSLATION protein_coding - CCDS25489.1 1 257.0 0.0 4.0 17.5 393.3 0.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048378 Or2o1 ENSMUST00000052668 ENSMUSP00000063062 TRANSLATION protein_coding - CCDS24599.1 - 312.0 0.0 1.0 6.0 178.4 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048378 Or2o1 ENSMUST00000216273 ENSMUSP00000149520 TRANSLATION protein_coding - CCDS24599.1 5 312.0 0.0 1.0 6.0 178.4 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000041798 Gck ENSMUST00000125434 ENSMUSP00000123016 TRANSLATION protein_coding start - 2 97.0 2.0 1.0 0.0 23.5 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000041798 Gck ENSMUST00000109822 ENSMUSP00000105447 TRANSLATION protein_coding - CCDS70135.1 1 465.0 31.0 9.25 6.9 516.6 0.0 -4,-5 0.6101 8 18.882 MINOR ENSMUSG00000041798 Gck ENSMUST00000109823 ENSMUSP00000105448 TRANSLATION protein_coding - CCDS70135.1 5 465.0 31.0 9.25 6.9 516.6 0.0 -4,-5 0.6101 8 18.882 MINOR ENSMUSG00000041798 Gck ENSMUST00000102920 ENSMUSP00000099984 TRANSLATION protein_coding - CCDS24409.1 1 465.0 31.0 9.5 18.1 516.6 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000097328 Tnfsf12 ENSMUST00000181810 ENSMUSP00000137972 TRANSLATION protein_coding - CCDS24907.1 1 249.0 0.0 1.875 8.3 55.1 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000097328 Tnfsf12 ENSMUST00000181261 ENSMUSP00000137916 TRANSLATION protein_coding stop - 3 98.0 0.0 0.455 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032633 Flcn ENSMUST00000091246 ENSMUSP00000091696 TRANSLATION protein_coding - CCDS24777.1 1 579.0 0.0 6.2 20.9 479.1 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000032633 Flcn ENSMUST00000047706 ENSMUSP00000037675 TRANSLATION protein_coding stop - 2 82.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000032633 Flcn ENSMUST00000148151 - NO_TRANSLATION retained_intron ENSMUSG00000032633 Flcn ENSMUST00000133647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032633 Flcn ENSMUST00000102697 ENSMUSP00000099758 TRANSLATION protein_coding - CCDS24777.1 1 579.0 0.0 6.2 20.9 479.1 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000032633 Flcn ENSMUST00000151453 - NO_TRANSLATION retained_intron ENSMUSG00000010392 Gosr1 ENSMUST00000010536 ENSMUSP00000010536 TRANSLATION protein_coding - CCDS25070.1 1 250.0 0.0 0.0 31.4 79.9 0.0 -4,-5 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000010392 Gosr1 ENSMUST00000137767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001056 Nhp2 ENSMUST00000001083 - NO_TRANSLATION retained_intron ENSMUSG00000001056 Nhp2 ENSMUST00000127405 ENSMUSP00000120014 TRANSLATION protein_coding - CCDS24655.1 1 153.0 0.0 3.35 20.7 82.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000018654 Ikzf1 ENSMUST00000240543 ENSMUSP00000159476 TRANSLATION protein_coding - - - 387.0 14.0 2.83 6.2 45.6 0.0 -4,-5 0.2115 6 5.561 MINOR ENSMUSG00000018654 Ikzf1 ENSMUST00000240544 ENSMUSP00000159477 TRANSLATION protein_coding - - - 327.0 10.0 1.88 0.0 20.5 0.0 -4,-5 0.0 5 0.8 MINOR ENSMUSG00000018654 Ikzf1 ENSMUST00000048122 ENSMUSP00000046974 TRANSLATION protein_coding - - 1 198.0 12.0 3.698 0.0 66.1 0.0 -4,-5 0.0042 2 5.636 MINOR ENSMUSG00000018654 Ikzf1 ENSMUST00000240541 ENSMUSP00000159474 TRANSLATION protein_coding stop - - 26.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018654 Ikzf1 ENSMUST00000141436 ENSMUSP00000117958 TRANSLATION protein_coding stop - 5 18.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018654 Ikzf1 ENSMUST00000240540 ENSMUSP00000159473 TRANSLATION protein_coding - CCDS24436.1 - 515.0 22.0 4.43 10.8 81.9 0.0 -4,-5 1.0 8 16.7 PRINCIPAL:4 ENSMUSG00000018654 Ikzf1 ENSMUST00000126058 ENSMUSP00000119960 TRANSLATION protein_coding stop - 3 79.0 3.0 1.498 0.0 26.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018654 Ikzf1 ENSMUST00000076700 ENSMUSP00000075992 TRANSLATION protein_coding - CCDS24436.1 1 515.0 22.0 4.43 10.8 81.9 0.0 -4,-5 1.0 8 16.7 PRINCIPAL:4 ENSMUSG00000018654 Ikzf1 ENSMUST00000018798 ENSMUSP00000018798 TRANSLATION protein_coding - CCDS24437.1 1 428.0 18.0 3.83 10.8 66.1 0.0 -4,-5 0.6725 7 12.236 MINOR ENSMUSG00000018654 Ikzf1 ENSMUST00000065433 ENSMUSP00000067372 TRANSLATION protein_coding - - 5 535.0 22.0 4.58 9.9 81.9 0.0 -4,-5 0.9064 8 16.724 ALTERNATIVE:1 ENSMUSG00000018654 Ikzf1 ENSMUST00000240542 ENSMUSP00000159475 TRANSLATION protein_coding - - - 240.0 16.0 4.098 0.0 81.9 0.0 -4,-5 0.0108 2 9.032 MINOR ENSMUSG00000020454 Eif4enif1 ENSMUST00000125224 - NO_TRANSLATION retained_intron ENSMUSG00000020454 Eif4enif1 ENSMUST00000131693 - NO_TRANSLATION retained_intron ENSMUSG00000020454 Eif4enif1 ENSMUST00000125637 ENSMUSP00000118527 TRANSLATION protein_coding stop - 3 194.0 0.0 0.0 0.0 160.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020454 Eif4enif1 ENSMUST00000110048 ENSMUSP00000105675 TRANSLATION protein_coding - CCDS48739.1 5 959.0 0.0 1.2 3.7 561.7 0.0 -4,-5 0.6457 11 12.654 MINOR ENSMUSG00000020454 Eif4enif1 ENSMUST00000127950 - NO_TRANSLATION retained_intron ENSMUSG00000020454 Eif4enif1 ENSMUST00000120721 ENSMUSP00000112550 TRANSLATION protein_coding - - 5 808.0 0.0 0.6 1.0 337.7 0.0 -4,-5 0.0209 11 3.0 MINOR ENSMUSG00000020454 Eif4enif1 ENSMUST00000110049 ENSMUSP00000105676 TRANSLATION protein_coding - CCDS24354.1 1 983.0 0.0 1.2 8.1 569.8 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000020454 Eif4enif1 ENSMUST00000179770 ENSMUSP00000136768 TRANSLATION protein_coding - CCDS24354.1 1 983.0 0.0 1.2 8.1 569.8 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000020454 Eif4enif1 ENSMUST00000132425 - NO_TRANSLATION retained_intron ENSMUSG00000020454 Eif4enif1 ENSMUST00000143770 - NO_TRANSLATION retained_intron ENSMUSG00000020454 Eif4enif1 ENSMUST00000020734 ENSMUSP00000020734 TRANSLATION protein_coding - CCDS48739.1 1 959.0 0.0 1.2 3.7 561.7 0.0 -4,-5 0.6457 11 12.654 MINOR ENSMUSG00000020454 Eif4enif1 ENSMUST00000147534 - NO_TRANSLATION retained_intron ENSMUSG00000020454 Eif4enif1 ENSMUST00000135223 ENSMUSP00000122912 TRANSLATION protein_coding start/stop - 3 239.0 0.0 0.0 0.0 115.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000048294 Krtap4-13 ENSMUST00000050106 ENSMUSP00000053810 TRANSLATION protein_coding - CCDS48921.1 - 165.0 0.0 0.0 0.0 119.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000097239 Gm27029 ENSMUST00000107257 ENSMUSP00000102878 TRANSLATION protein_coding,RT - - 5 525.0 3.0 13.75 1.0 61.7 0.0 -4,-5 0.7308 - -2.0 ALTERNATIVE:2 ENSMUSG00000097239 Gm27029 ENSMUST00000107259 ENSMUSP00000102880 TRANSLATION protein_coding,RT - - 5 543.0 3.0 14.25 0.0 61.7 0.0 -4,-6 0.0752 - -2.0 PRINCIPAL:5 ENSMUSG00000091228 Gm20390 ENSMUST00000170303 ENSMUSP00000132590 TRANSLATION protein_coding,RT - - 5 267.0 15.0 5.33 1.0 328.7 0.0 -4,-5 0.7719 - -2.0 PRINCIPAL:1 ENSMUSG00000037926 Ssh2 ENSMUST00000180554 - NO_TRANSLATION retained_intron ENSMUSG00000037926 Ssh2 ENSMUST00000180394 - NO_TRANSLATION retained_intron ENSMUSG00000037926 Ssh2 ENSMUST00000037912 ENSMUSP00000042625 TRANSLATION protein_coding - CCDS25076.1 1 1423.0 7.0 3.0 4.9 155.0 0.0 -4,-7 1.0 27 16.0 PRINCIPAL:3 ENSMUSG00000037926 Ssh2 ENSMUST00000156488 ENSMUSP00000119681 TRANSLATION protein_coding stop - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000037926 Ssh2 ENSMUST00000180545 - NO_TRANSLATION retained_intron ENSMUSG00000037926 Ssh2 ENSMUST00000181283 ENSMUSP00000137933 TRANSLATION protein_coding - CCDS70248.1 1 1429.0 7.0 3.0 3.9 155.0 0.0 -4,-6 0.9092 26 15.488 ALTERNATIVE:2 ENSMUSG00000037926 Ssh2 ENSMUST00000127890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018736 Ndel1 ENSMUST00000143899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018736 Ndel1 ENSMUST00000127469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018736 Ndel1 ENSMUST00000101017 ENSMUSP00000098579 TRANSLATION protein_coding - - 1 315.0 0.0 5.6 4.4 157.9 0.0 -4,-5 0.1964 8 12.508 MINOR ENSMUSG00000018736 Ndel1 ENSMUST00000018880 ENSMUSP00000018880 TRANSLATION protein_coding - CCDS24870.1 1 345.0 0.0 5.6 27.8 157.9 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000018736 Ndel1 ENSMUST00000108672 ENSMUSP00000104312 TRANSLATION protein_coding - - 1 315.0 0.0 5.6 4.4 157.9 0.0 -4,-5 0.1964 8 12.508 MINOR ENSMUSG00000018736 Ndel1 ENSMUST00000144300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059397 Or1x2 ENSMUST00000072152 ENSMUSP00000072016 TRANSLATION protein_coding - CCDS24647.1 - 313.0 0.0 1.0 7.4 192.6 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059397 Or1x2 ENSMUST00000215409 ENSMUSP00000148863 TRANSLATION protein_coding - CCDS24647.1 5 313.0 0.0 1.0 7.4 192.6 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059397 Or1x2 ENSMUST00000217480 ENSMUSP00000150809 TRANSLATION protein_coding - CCDS24647.1 5 313.0 0.0 1.0 7.4 192.6 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020839 Tmigd1 ENSMUST00000102495 ENSMUSP00000099553 TRANSLATION protein_coding - CCDS25072.1 1 261.0 0.0 4.37 0.0 54.6 1.0 2,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000020839 Tmigd1 ENSMUST00000142166 ENSMUSP00000121222 TRANSLATION protein_coding stop - 2 140.0 0.0 1.87 0.0 0.0 0.0 2,-2 0.0038 - -2.0 MINOR ENSMUSG00000020839 Tmigd1 ENSMUST00000072633 ENSMUSP00000072427 TRANSLATION protein_coding - CCDS25072.1 1 261.0 0.0 4.37 0.0 54.6 1.0 2,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000020839 Tmigd1 ENSMUST00000136899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038967 Pdk2 ENSMUST00000141712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038967 Pdk2 ENSMUST00000126730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038967 Pdk2 ENSMUST00000155857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038967 Pdk2 ENSMUST00000038431 ENSMUSP00000041447 TRANSLATION protein_coding - CCDS25270.1 1 407.0 25.0 10.25 34.7 230.3 0.0 -4,-1 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000038967 Pdk2 ENSMUST00000129262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042148 Cox10 ENSMUST00000049091 ENSMUSP00000040138 TRANSLATION protein_coding - CCDS24839.1 1 443.0 0.0 3.75 7.0 190.8 0.0 -4,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000042148 Cox10 ENSMUST00000125702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039450 Dcxr ENSMUST00000122883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039450 Dcxr ENSMUST00000106148 ENSMUSP00000101754 TRANSLATION protein_coding - CCDS83949.1 2 236.0 27.0 6.3 1.8 116.7 0.0 -4,-1 0.1074 6 14.164 MINOR ENSMUSG00000039450 Dcxr ENSMUST00000125242 - NO_TRANSLATION retained_intron ENSMUSG00000039450 Dcxr ENSMUST00000026144 ENSMUSP00000026144 TRANSLATION protein_coding - CCDS25755.1 1 244.0 27.0 6.75 29.5 167.5 0.0 -4,-1 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000041046 Ramp3 ENSMUST00000139540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041046 Ramp3 ENSMUST00000045374 ENSMUSP00000047518 TRANSLATION protein_coding - CCDS24425.1 1 147.0 0.0 2.0 0.1 143.8 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000051617 Krt9 ENSMUST00000059707 ENSMUSP00000055255 TRANSLATION protein_coding - CCDS25412.1 1 743.0 0.0 3.216 0.0 304.4 0.0 -4,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000005202 Shbg ENSMUST00000137159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005202 Shbg ENSMUST00000005334 ENSMUSP00000005334 TRANSLATION protein_coding - CCDS24899.1 1 403.0 0.0 4.5 0.1 102.0 0.0 3,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000020463 Ppp4r3b ENSMUST00000020755 ENSMUSP00000020755 TRANSLATION protein_coding - CCDS24492.1 1 820.0 0.0 2.5 22.2 271.8 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000020463 Ppp4r3b ENSMUST00000102856 ENSMUSP00000099920 TRANSLATION protein_coding - - 1 616.0 0.0 2.5 0.0 271.8 0.0 -4,-6 0.0432 4 12.0 MINOR ENSMUSG00000020463 Ppp4r3b ENSMUST00000156280 ENSMUSP00000119241 TRANSLATION protein_coding stop - 3 194.0 0.0 1.5 0.0 87.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020463 Ppp4r3b ENSMUST00000148759 ENSMUSP00000137716 TRANSLATION nonsense_mediated_decay start - 2 89.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 2 -2.0 MINOR ENSMUSG00000020463 Ppp4r3b ENSMUST00000127621 ENSMUSP00000117918 TRANSLATION protein_coding start/stop - 5 192.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000020463 Ppp4r3b ENSMUST00000139283 - NO_TRANSLATION retained_intron ENSMUSG00000020463 Ppp4r3b ENSMUST00000127818 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004040 Stat3 ENSMUST00000138438 ENSMUSP00000121677 TRANSLATION protein_coding - - 5 744.0 0.0 16.91 1.0 597.1 0.0 -4,-5 0.0844 29 5.834 MINOR ENSMUSG00000004040 Stat3 ENSMUST00000152601 - NO_TRANSLATION retained_intron ENSMUSG00000004040 Stat3 ENSMUST00000146971 - NO_TRANSLATION retained_intron ENSMUSG00000004040 Stat3 ENSMUST00000127638 ENSMUSP00000120152 TRANSLATION protein_coding - CCDS25440.1 1 770.0 0.0 17.66 24.2 629.6 0.0 -4,-5 0.9922 31 12.0 ALTERNATIVE:1 ENSMUSG00000004040 Stat3 ENSMUST00000154170 - NO_TRANSLATION retained_intron ENSMUSG00000004040 Stat3 ENSMUST00000151544 - NO_TRANSLATION retained_intron ENSMUSG00000004040 Stat3 ENSMUST00000137093 - NO_TRANSLATION retained_intron ENSMUSG00000004040 Stat3 ENSMUST00000152623 - NO_TRANSLATION retained_intron ENSMUSG00000004040 Stat3 ENSMUST00000130686 - NO_TRANSLATION retained_intron ENSMUSG00000004040 Stat3 ENSMUST00000156645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004040 Stat3 ENSMUST00000103114 ENSMUSP00000099403 TRANSLATION protein_coding - CCDS25441.1 1 722.0 0.0 17.66 10.7 629.6 0.0 -4,-5 0.7645 31 9.672 MINOR ENSMUSG00000004040 Stat3 ENSMUST00000137367 - NO_TRANSLATION retained_intron ENSMUSG00000004040 Stat3 ENSMUST00000092671 ENSMUSP00000090342 TRANSLATION protein_coding - CCDS48934.1 1 769.0 0.0 17.66 24.2 629.6 0.0 -4,-5 1.0 31 12.0 PRINCIPAL:4 ENSMUSG00000004040 Stat3 ENSMUST00000155972 - NO_TRANSLATION retained_intron ENSMUSG00000075566 Krtap4-6 ENSMUST00000100476 ENSMUSP00000098045 TRANSLATION protein_coding - CCDS48914.1 - 195.0 0.0 0.0 0.0 106.6 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000078771 Evi2a ENSMUST00000133148 ENSMUSP00000159581 TRANSLATION protein_coding - CCDS25122.1 2 223.0 0.0 0.5 0.1 343.5 1.0 -1,-4 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000078771 Evi2a ENSMUST00000146611 ENSMUSP00000115683 TRANSLATION protein_coding stop - 3 59.0 0.0 0.0 0.0 29.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000078771 Evi2a ENSMUST00000103236 ENSMUSP00000099526 TRANSLATION protein_coding - CCDS25122.1 1 223.0 0.0 0.5 0.1 343.5 1.0 -1,-4 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000078771 Evi2a ENSMUST00000154415 ENSMUSP00000137045 TRANSLATION protein_coding start - 2 78.0 0.0 0.0 0.0 59.4 0.0 0,-3 0.0049 - -2.0 MINOR ENSMUSG00000020778 Ten1 ENSMUST00000135460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020778 Ten1 ENSMUST00000021130 ENSMUSP00000021130 TRANSLATION protein_coding - CCDS48982.1 1 161.0 0.0 3.0 0.0 137.6 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000020778 Ten1 ENSMUST00000146066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020778 Ten1 ENSMUST00000124663 - NO_TRANSLATION retained_intron ENSMUSG00000034621 Gpatch8 ENSMUST00000125754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034621 Gpatch8 ENSMUST00000127018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034621 Gpatch8 ENSMUST00000131573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034621 Gpatch8 ENSMUST00000143842 ENSMUSP00000120649 TRANSLATION protein_coding - CCDS48944.1 5 1505.0 3.0 2.0 0.0 76.7 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000034621 Gpatch8 ENSMUST00000069673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034621 Gpatch8 ENSMUST00000126804 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035441 Myo1d ENSMUST00000125944 - NO_TRANSLATION retained_intron ENSMUSG00000035441 Myo1d ENSMUST00000070997 ENSMUSP00000066948 TRANSLATION protein_coding - - 1 944.0 15.0 12.922 0.0 900.9 0.0 -4,-5 0.114 35 13.656 MINOR ENSMUSG00000035441 Myo1d ENSMUST00000041065 ENSMUSP00000037819 TRANSLATION protein_coding - CCDS36242.1 5 1006.0 15.0 12.822 34.9 973.3 0.0 -4,-5 1.0 42 21.802 PRINCIPAL:1 ENSMUSG00000020366 Mapk9 ENSMUST00000178543 ENSMUSP00000136977 TRANSLATION protein_coding - CCDS48782.1 5 423.0 21.0 8.85 25.7 216.1 0.0 -4,-5 1.0 8 16.0 ALTERNATIVE:1 ENSMUSG00000020366 Mapk9 ENSMUST00000144857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020366 Mapk9 ENSMUST00000151695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020366 Mapk9 ENSMUST00000109179 ENSMUSP00000104808 TRANSLATION protein_coding - CCDS24624.1 5 381.0 21.0 8.85 23.7 216.1 0.0 -4,-5 0.9336 6 15.676 ALTERNATIVE:1 ENSMUSG00000020366 Mapk9 ENSMUST00000109178 ENSMUSP00000104807 TRANSLATION protein_coding - CCDS48783.1 1 381.0 21.0 8.85 23.7 215.4 0.0 -4,-5 0.8456 7 15.676 ALTERNATIVE:1 ENSMUSG00000020366 Mapk9 ENSMUST00000164643 ENSMUSP00000132864 TRANSLATION protein_coding - CCDS48783.1 5 381.0 21.0 8.85 23.7 215.4 0.0 -4,-5 0.8456 7 15.676 ALTERNATIVE:1 ENSMUSG00000020366 Mapk9 ENSMUST00000148274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020366 Mapk9 ENSMUST00000102778 ENSMUSP00000099839 TRANSLATION protein_coding - CCDS24624.1 1 381.0 21.0 8.85 23.7 216.1 0.0 -4,-5 0.9336 6 15.676 ALTERNATIVE:1 ENSMUSG00000020366 Mapk9 ENSMUST00000043321 ENSMUSP00000042744 TRANSLATION protein_coding - CCDS48782.1 1 423.0 21.0 8.85 25.7 216.1 0.0 -4,-5 1.0 8 16.0 ALTERNATIVE:1 ENSMUSG00000020366 Mapk9 ENSMUST00000020634 ENSMUSP00000020634 TRANSLATION protein_coding - CCDS24623.1 1 423.0 21.0 8.85 25.7 215.4 0.0 -4,-5 0.9333 9 16.0 PRINCIPAL:3 ENSMUSG00000017405 Nek8 ENSMUST00000017549 ENSMUSP00000017549 TRANSLATION protein_coding - CCDS25091.1 1 698.0 18.0 9.15 15.2 390.0 0.0 -4,-7 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000017405 Nek8 ENSMUST00000141444 - NO_TRANSLATION retained_intron ENSMUSG00000017405 Nek8 ENSMUST00000131015 - NO_TRANSLATION retained_intron ENSMUSG00000017405 Nek8 ENSMUST00000142812 - NO_TRANSLATION retained_intron ENSMUSG00000017405 Nek8 ENSMUST00000147798 - NO_TRANSLATION retained_intron ENSMUSG00000017405 Nek8 ENSMUST00000125528 - NO_TRANSLATION retained_intron ENSMUSG00000017405 Nek8 ENSMUST00000152611 - NO_TRANSLATION retained_intron ENSMUSG00000017405 Nek8 ENSMUST00000148154 ENSMUSP00000127554 TRANSLATION protein_coding stop - 5 103.0 1.0 2.55 0.0 71.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000035831 Krt25 ENSMUST00000038004 ENSMUSP00000048439 TRANSLATION protein_coding - CCDS25377.1 1 446.0 0.0 3.75 11.5 327.6 0.0 -4,0 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000000282 Mnt ENSMUST00000133217 - NO_TRANSLATION retained_intron ENSMUSG00000000282 Mnt ENSMUST00000000291 ENSMUSP00000000291 TRANSLATION protein_coding - CCDS25037.1 1 591.0 0.0 1.7 7.1 48.0 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000000282 Mnt ENSMUST00000132150 ENSMUSP00000118435 TRANSLATION protein_coding start/stop - 5 207.0 0.0 1.2 0.0 34.9 0.0 -4,-6 0.0033 1 -2.0 MINOR ENSMUSG00000020781 Tsen54 ENSMUST00000141748 - NO_TRANSLATION retained_intron ENSMUSG00000020781 Tsen54 ENSMUST00000021134 ENSMUSP00000021134 TRANSLATION protein_coding - CCDS25648.1 1 525.0 0.0 1.15 6.8 68.1 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000020781 Tsen54 ENSMUST00000129765 - NO_TRANSLATION retained_intron ENSMUSG00000020781 Tsen54 ENSMUST00000157061 ENSMUSP00000118342 TRANSLATION protein_coding start/stop - 2 165.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020781 Tsen54 ENSMUST00000128266 - NO_TRANSLATION retained_intron ENSMUSG00000020781 Tsen54 ENSMUST00000106481 ENSMUSP00000102090 TRANSLATION protein_coding - - 1 486.0 0.0 1.15 0.0 68.1 0.0 -4,-5 0.0489 6 12.0 MINOR ENSMUSG00000020781 Tsen54 ENSMUST00000136343 ENSMUSP00000120506 TRANSLATION protein_coding start/stop - 3 275.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000020781 Tsen54 ENSMUST00000154304 ENSMUSP00000116955 TRANSLATION protein_coding start - 3 153.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040985 Sun3 ENSMUST00000102909 ENSMUSP00000099973 TRANSLATION protein_coding - CCDS24430.1 1 260.0 0.0 4.6 0.8 157.5 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000040985 Sun3 ENSMUST00000043377 ENSMUSP00000045199 TRANSLATION protein_coding - CCDS70140.1 1 320.0 0.0 4.6 0.4 157.5 0.0 -1,-5 0.3381 - 8.0 ALTERNATIVE:2 ENSMUSG00000019590 Cyb561 ENSMUST00000143251 ENSMUSP00000121990 TRANSLATION protein_coding stop - 3 209.0 0.0 4.08 0.0 139.9 9.0 -4,0 0.0045 - -2.0 MINOR ENSMUSG00000019590 Cyb561 ENSMUST00000019734 ENSMUSP00000019734 TRANSLATION protein_coding - CCDS25542.1 1 250.0 0.0 6.24 5.6 153.5 11.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000019590 Cyb561 ENSMUST00000184269 ENSMUSP00000138889 TRANSLATION protein_coding stop - 5 181.0 0.0 2.75 0.0 90.0 7.0 -4,-2 0.0022 - -2.0 MINOR ENSMUSG00000019590 Cyb561 ENSMUST00000150563 ENSMUSP00000138838 TRANSLATION protein_coding stop - 3 99.0 0.0 2.0 0.0 49.6 4.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000019590 Cyb561 ENSMUST00000184086 ENSMUSP00000138931 TRANSLATION protein_coding - - 5 192.0 0.0 3.4 0.0 101.4 7.0 -4,-5 0.0029 - 3.192 MINOR ENSMUSG00000019590 Cyb561 ENSMUST00000146607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019590 Cyb561 ENSMUST00000183493 ENSMUSP00000139125 TRANSLATION protein_coding start - 5 106.0 0.0 2.0 0.0 53.8 5.0 1,-3 0.0055 - -2.0 MINOR ENSMUSG00000025580 Eif4a3 ENSMUST00000135294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025580 Eif4a3 ENSMUST00000106253 ENSMUSP00000101860 TRANSLATION protein_coding stop - 5 299.0 13.0 7.25 0.0 132.8 0.0 -4,-7 0.0009 2 -2.0 MINOR ENSMUSG00000025580 Eif4a3 ENSMUST00000138849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025580 Eif4a3 ENSMUST00000129044 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025580 Eif4a3 ENSMUST00000134743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025580 Eif4a3 ENSMUST00000026667 ENSMUSP00000026667 TRANSLATION protein_coding - CCDS25714.1 1 411.0 13.0 10.33 20.9 251.0 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000096806 Or5af1 ENSMUST00000078217 ENSMUSP00000077344 TRANSLATION protein_coding - CCDS24749.1 - 308.0 0.0 1.0 9.4 178.6 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096806 Or5af1 ENSMUST00000216407 ENSMUSP00000149697 TRANSLATION protein_coding - CCDS24749.1 5 308.0 0.0 1.0 9.4 178.6 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020464 Pnpt1 ENSMUST00000131527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020464 Pnpt1 ENSMUST00000154924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020464 Pnpt1 ENSMUST00000148173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020464 Pnpt1 ENSMUST00000020756 ENSMUSP00000020756 TRANSLATION protein_coding - CCDS24490.1 1 783.0 10.0 18.85 2.0 227.7 0.0 -1,2 1.0 22 19.0 PRINCIPAL:1 ENSMUSG00000018698 Lhx1 ENSMUST00000018842 ENSMUSP00000018842 TRANSLATION protein_coding - CCDS25187.1 1 406.0 16.0 4.0 30.4 190.3 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000018698 Lhx1 ENSMUST00000092827 ENSMUSP00000090503 TRANSLATION protein_coding stop - 3 112.0 8.0 1.85 0.0 67.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000018698 Lhx1 ENSMUST00000176503 - NO_TRANSLATION retained_intron ENSMUSG00000018698 Lhx1 ENSMUST00000184646 ENSMUSP00000138899 TRANSLATION protein_coding - - 5 315.0 3.0 2.0 2.0 70.2 0.0 -4,-5 0.0317 - 2.134 MINOR ENSMUSG00000041958 Pigs ENSMUST00000048073 ENSMUSP00000044871 TRANSLATION protein_coding - CCDS25100.1 1 555.0 0.0 0.0 10.3 474.2 0.0 -2,-5 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000020774 Aspa ENSMUST00000132774 - NO_TRANSLATION retained_intron ENSMUSG00000020774 Aspa ENSMUST00000021119 ENSMUSP00000021119 TRANSLATION protein_coding - CCDS25005.1 1 312.0 7.0 6.5 16.6 234.6 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020774 Aspa ENSMUST00000155630 ENSMUSP00000139131 TRANSLATION protein_coding stop - 5 196.0 7.0 4.0 0.0 162.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000020774 Aspa ENSMUST00000134079 ENSMUSP00000121135 TRANSLATION protein_coding stop - 3 163.0 7.0 2.75 0.0 137.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000020774 Aspa ENSMUST00000184572 ENSMUSP00000139318 TRANSLATION protein_coding - CCDS25005.1 5 312.0 7.0 6.5 16.6 234.6 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020774 Aspa ENSMUST00000141898 ENSMUSP00000118109 TRANSLATION nonsense_mediated_decay - - 3 106.0 6.0 1.0 0.0 72.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000001558 Klhl10 ENSMUST00000001599 ENSMUSP00000001599 TRANSLATION protein_coding - CCDS25423.1 1 608.0 0.0 5.0 15.2 474.0 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000001558 Klhl10 ENSMUST00000107395 ENSMUSP00000103018 TRANSLATION protein_coding - - 1 270.0 0.0 2.2 0.0 198.3 0.0 -4,-6 0.0 2 0.402 MINOR ENSMUSG00000006056 Calcoco2 ENSMUST00000068686 ENSMUSP00000087407 TRANSLATION protein_coding - CCDS59567.1 1 331.0 0.0 3.6 0.0 108.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000002812 Flii ENSMUST00000154465 - NO_TRANSLATION retained_intron ENSMUSG00000002812 Flii ENSMUST00000154141 - NO_TRANSLATION retained_intron ENSMUSG00000002812 Flii ENSMUST00000002889 ENSMUSP00000002889 TRANSLATION protein_coding - CCDS24795.1 1 1271.0 3.0 14.655 16.0 310.2 0.0 -4,-5 1.0 29 19.0 PRINCIPAL:1 ENSMUSG00000002812 Flii ENSMUST00000137226 - NO_TRANSLATION retained_intron ENSMUSG00000020902 Ntn1 ENSMUST00000108674 ENSMUSP00000104314 TRANSLATION protein_coding - CCDS24864.1 5 604.0 6.0 4.1 17.7 512.1 0.0 3,-1 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020902 Ntn1 ENSMUST00000135141 ENSMUSP00000121193 TRANSLATION protein_coding stop - 2 159.0 4.0 1.0 0.0 124.8 0.0 3,-1 0.0 3 -2.0 MINOR ENSMUSG00000020902 Ntn1 ENSMUST00000021284 ENSMUSP00000021284 TRANSLATION protein_coding - CCDS24864.1 5 604.0 6.0 4.1 17.7 512.1 0.0 3,-1 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000040463 Mybbp1a ENSMUST00000162048 - NO_TRANSLATION retained_intron ENSMUSG00000040463 Mybbp1a ENSMUST00000144923 - NO_TRANSLATION retained_intron ENSMUSG00000040463 Mybbp1a ENSMUST00000045633 ENSMUSP00000044827 TRANSLATION protein_coding - CCDS24986.1 1 1344.0 0.0 0.0 0.3 630.3 0.0 -4,-5 1.0 37 6.0 PRINCIPAL:1 ENSMUSG00000040463 Mybbp1a ENSMUST00000155995 - NO_TRANSLATION retained_intron ENSMUSG00000040463 Mybbp1a ENSMUST00000144374 - NO_TRANSLATION retained_intron ENSMUSG00000040463 Mybbp1a ENSMUST00000134119 - NO_TRANSLATION retained_intron ENSMUSG00000040463 Mybbp1a ENSMUST00000156833 - NO_TRANSLATION retained_intron ENSMUSG00000040463 Mybbp1a ENSMUST00000152894 - NO_TRANSLATION retained_intron ENSMUSG00000035086 Becn1 ENSMUST00000139997 - NO_TRANSLATION retained_intron ENSMUSG00000035086 Becn1 ENSMUST00000140706 ENSMUSP00000122412 TRANSLATION protein_coding stop - 2 110.0 2.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 1 -2.0 MINOR ENSMUSG00000035086 Becn1 ENSMUST00000167818 ENSMUSP00000131629 TRANSLATION nonsense_mediated_decay - - 5 46.0 2.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 - -2.0 MINOR ENSMUSG00000035086 Becn1 ENSMUST00000135805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035086 Becn1 ENSMUST00000164036 - NO_TRANSLATION retained_intron ENSMUSG00000035086 Becn1 ENSMUST00000130916 ENSMUSP00000119369 TRANSLATION protein_coding - CCDS25462.1 1 448.0 2.0 7.61 31.9 496.0 0.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000035086 Becn1 ENSMUST00000167667 ENSMUSP00000130951 TRANSLATION nonsense_mediated_decay - - 5 46.0 2.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 1 -2.0 MINOR ENSMUSG00000035086 Becn1 ENSMUST00000170502 ENSMUSP00000128413 TRANSLATION protein_coding - - 1 105.0 2.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 1 2.0 MINOR ENSMUSG00000035086 Becn1 ENSMUST00000137614 - NO_TRANSLATION retained_intron ENSMUSG00000035086 Becn1 ENSMUST00000122817 - NO_TRANSLATION retained_intron ENSMUSG00000035086 Becn1 ENSMUST00000126195 ENSMUSP00000122168 TRANSLATION nonsense_mediated_decay start - 3 168.0 0.0 1.95 0.0 114.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000035086 Becn1 ENSMUST00000140286 - NO_TRANSLATION retained_intron ENSMUSG00000035086 Becn1 ENSMUST00000172233 ENSMUSP00000129156 TRANSLATION protein_coding - - 5 277.0 2.0 4.33 1.0 241.4 0.0 -4,-7 0.006 4 2.0 MINOR ENSMUSG00000035086 Becn1 ENSMUST00000129863 ENSMUSP00000116580 TRANSLATION protein_coding start/stop - 5 125.0 0.0 2.33 0.0 184.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035086 Becn1 ENSMUST00000139669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035086 Becn1 ENSMUST00000041403 ENSMUSP00000040094 TRANSLATION nonsense_mediated_decay - - 1 105.0 2.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 1 -2.0 MINOR ENSMUSG00000035086 Becn1 ENSMUST00000136535 - NO_TRANSLATION retained_intron ENSMUSG00000107645 Or2y10 ENSMUST00000215360 ENSMUSP00000151039 TRANSLATION protein_coding - CCDS24617.1 5 311.0 0.0 1.0 0.0 159.0 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000107645 Or2y10 ENSMUST00000204300 ENSMUSP00000145428 TRANSLATION protein_coding - CCDS24617.1 - 311.0 0.0 1.0 0.0 159.0 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038976 Ppp1r9b ENSMUST00000151771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038976 Ppp1r9b ENSMUST00000107748 ENSMUSP00000103377 TRANSLATION protein_coding - - 1 393.0 0.0 4.0 0.0 50.3 0.0 -4,-6 0.0295 9 12.0 MINOR ENSMUSG00000038976 Ppp1r9b ENSMUST00000038696 ENSMUSP00000041732 TRANSLATION protein_coding - CCDS25268.1 1 817.0 0.0 4.0 5.3 50.3 0.0 -4,-7 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000020282 Rhbdf1 ENSMUST00000146179 ENSMUSP00000118985 TRANSLATION nonsense_mediated_decay - - 1 168.0 0.0 0.0 0.0 106.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000020282 Rhbdf1 ENSMUST00000150381 ENSMUSP00000118769 TRANSLATION protein_coding stop - 3 136.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020282 Rhbdf1 ENSMUST00000143988 ENSMUSP00000117471 TRANSLATION protein_coding start - 5 231.0 0.0 3.58 0.0 73.4 5.0 -4,-5 0.0021 1 -2.0 MINOR ENSMUSG00000020282 Rhbdf1 ENSMUST00000143036 - NO_TRANSLATION retained_intron ENSMUSG00000020282 Rhbdf1 ENSMUST00000132578 ENSMUSP00000120543 TRANSLATION nonsense_mediated_decay - - 5 168.0 0.0 0.0 0.0 106.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020282 Rhbdf1 ENSMUST00000142274 - NO_TRANSLATION retained_intron ENSMUSG00000020282 Rhbdf1 ENSMUST00000020524 ENSMUSP00000020524 TRANSLATION protein_coding - CCDS24519.1 1 856.0 0.0 9.66 21.7 475.0 7.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000020282 Rhbdf1 ENSMUST00000137125 - NO_TRANSLATION retained_intron ENSMUSG00000020282 Rhbdf1 ENSMUST00000144902 ENSMUSP00000122533 TRANSLATION protein_coding stop - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000020828 Pld2 ENSMUST00000179806 - NO_TRANSLATION retained_intron ENSMUSG00000020828 Pld2 ENSMUST00000157075 ENSMUSP00000137247 TRANSLATION protein_coding stop - 2 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020828 Pld2 ENSMUST00000108556 ENSMUSP00000104196 TRANSLATION protein_coding - CCDS78980.1 1 337.0 0.0 0.8 0.9 97.9 0.0 -4,-5 0.0291 5 2.25 MINOR ENSMUSG00000020828 Pld2 ENSMUST00000018429 ENSMUSP00000018429 TRANSLATION protein_coding - CCDS24953.1 1 933.0 3.0 12.82 7.8 160.4 0.0 -4,-5 1.0 12 17.0 PRINCIPAL:1 ENSMUSG00000020828 Pld2 ENSMUST00000130678 ENSMUSP00000136566 TRANSLATION protein_coding start - 5 132.0 1.0 3.0 0.0 32.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020828 Pld2 ENSMUST00000108557 ENSMUSP00000104197 TRANSLATION protein_coding - CCDS78979.1 1 944.0 3.0 12.49 0.0 159.4 0.0 -4,-5 0.274 12 14.28 MINOR ENSMUSG00000020828 Pld2 ENSMUST00000146248 - NO_TRANSLATION retained_intron ENSMUSG00000017204 Gsdma ENSMUST00000017348 ENSMUSP00000017348 TRANSLATION protein_coding - CCDS25358.1 1 446.0 0.0 8.248 10.6 482.1 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000017211 Gsdma2 ENSMUST00000131549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017211 Gsdma2 ENSMUST00000093938 ENSMUSP00000091470 TRANSLATION protein_coding - CCDS36301.1 1 443.0 0.0 8.6 7.0 470.0 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000017211 Gsdma2 ENSMUST00000136111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017211 Gsdma2 ENSMUST00000017355 ENSMUSP00000017355 TRANSLATION protein_coding - - 1 276.0 0.0 5.35 0.0 241.1 0.0 -3,-6 0.0 - 0.0 MINOR ENSMUSG00000017211 Gsdma2 ENSMUST00000138686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017211 Gsdma2 ENSMUST00000129186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017211 Gsdma2 ENSMUST00000127692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038366 Lasp1 ENSMUST00000129828 ENSMUSP00000115308 TRANSLATION protein_coding stop - 3 129.0 2.0 1.808 0.0 85.7 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000143571 ENSMUSP00000116102 TRANSLATION protein_coding stop - 5 28.0 3.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000107569 - NO_TRANSLATION retained_intron ENSMUSG00000038366 Lasp1 ENSMUST00000127033 ENSMUSP00000127792 TRANSLATION protein_coding stop - 3 70.0 2.0 1.31 0.0 44.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000138919 ENSMUSP00000114407 TRANSLATION protein_coding stop - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000129558 ENSMUSP00000123165 TRANSLATION protein_coding stop - 2 103.0 2.0 1.808 0.0 85.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000148280 ENSMUSP00000123050 TRANSLATION protein_coding stop - 3 186.0 2.0 2.572 0.0 85.7 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000107568 - NO_TRANSLATION retained_intron ENSMUSG00000038366 Lasp1 ENSMUST00000153520 ENSMUSP00000120458 TRANSLATION protein_coding stop - 1 47.0 2.0 1.31 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000136723 ENSMUSP00000114306 TRANSLATION protein_coding stop - 5 69.0 2.0 1.31 0.0 44.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000146572 ENSMUSP00000121907 TRANSLATION protein_coding stop - 5 89.0 2.0 1.808 0.0 75.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000127575 - NO_TRANSLATION retained_intron ENSMUSG00000038366 Lasp1 ENSMUST00000152962 ENSMUSP00000120645 TRANSLATION protein_coding stop - 3 99.0 2.0 1.808 0.0 85.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000134428 ENSMUSP00000119797 TRANSLATION protein_coding stop - 3 18.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000155762 ENSMUSP00000119538 TRANSLATION protein_coding stop - 3 56.0 0.0 0.45 0.0 44.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000038366 Lasp1 ENSMUST00000043843 ENSMUSP00000042123 TRANSLATION protein_coding - CCDS25332.1 1 263.0 8.0 4.0895 20.0 186.5 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000019102 Aldh3a1 ENSMUST00000147792 ENSMUSP00000118613 TRANSLATION protein_coding stop - 3 34.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000019102 Aldh3a1 ENSMUST00000108716 ENSMUSP00000104356 TRANSLATION protein_coding - CCDS24808.1 1 453.0 30.0 9.5 9.3 316.8 0.0 -4,-2 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000019102 Aldh3a1 ENSMUST00000019246 ENSMUSP00000019246 TRANSLATION protein_coding - CCDS24808.1 1 453.0 30.0 9.5 9.3 316.8 0.0 -4,-2 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000040543 Pitpnm3 ENSMUST00000132781 - NO_TRANSLATION retained_intron ENSMUSG00000040543 Pitpnm3 ENSMUST00000142471 - NO_TRANSLATION retained_intron ENSMUSG00000040543 Pitpnm3 ENSMUST00000108508 ENSMUSP00000104148 TRANSLATION protein_coding - CCDS36213.1 1 958.0 7.0 0.0 3.3 147.8 0.0 -4,-7 0.8679 11 9.394 ALTERNATIVE:2 ENSMUSG00000040543 Pitpnm3 ENSMUST00000134210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040543 Pitpnm3 ENSMUST00000075258 ENSMUSP00000074737 TRANSLATION protein_coding - CCDS24978.1 1 974.0 7.0 0.0 4.3 147.8 0.0 -4,-6 1.0 12 10.0 PRINCIPAL:3 ENSMUSG00000020823 Sec14l1 ENSMUST00000127090 - NO_TRANSLATION retained_intron ENSMUSG00000020823 Sec14l1 ENSMUST00000146585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020823 Sec14l1 ENSMUST00000153437 - NO_TRANSLATION retained_intron ENSMUSG00000020823 Sec14l1 ENSMUST00000090433 ENSMUSP00000087916 TRANSLATION protein_coding - CCDS48989.1 1 715.0 0.0 6.265 4.6 340.5 0.0 -4,-7 0.7831 17 13.188 MINOR ENSMUSG00000020823 Sec14l1 ENSMUST00000103026 ENSMUSP00000099315 TRANSLATION protein_coding - CCDS48988.1 5 716.0 0.0 6.265 0.0 340.5 0.0 -4,-7 0.4534 16 12.0 MINOR ENSMUSG00000020823 Sec14l1 ENSMUST00000021177 ENSMUSP00000021177 TRANSLATION protein_coding - CCDS25683.1 1 719.0 0.0 6.265 10.1 340.5 0.0 -4,-7 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000020868 Xylt2 ENSMUST00000153485 ENSMUSP00000122581 TRANSLATION nonsense_mediated_decay - - 5 607.0 0.0 6.45 0.0 251.7 0.0 -1,-4 0.0 5 -2.0 MINOR ENSMUSG00000020868 Xylt2 ENSMUST00000116349 ENSMUSP00000112052 TRANSLATION protein_coding - CCDS48888.1 1 865.0 0.0 10.198 12.7 425.1 0.0 -1,-4 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000020868 Xylt2 ENSMUST00000154830 - NO_TRANSLATION retained_intron ENSMUSG00000020868 Xylt2 ENSMUST00000150377 ENSMUSP00000134495 TRANSLATION protein_coding start/stop - 5 145.0 0.0 2.75 0.0 85.7 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020868 Xylt2 ENSMUST00000146693 ENSMUSP00000122728 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000020868 Xylt2 ENSMUST00000174178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020723 Cacng4 ENSMUST00000134076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020723 Cacng4 ENSMUST00000021066 ENSMUSP00000021066 TRANSLATION protein_coding - CCDS25571.1 1 327.0 0.0 2.58 26.3 135.8 0.0 -2,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000044367 Slc16a13 ENSMUST00000141290 ENSMUSP00000116316 TRANSLATION protein_coding stop - 3 80.0 0.0 1.33 0.0 0.0 2.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000044367 Slc16a13 ENSMUST00000190533 ENSMUSP00000139873 TRANSLATION protein_coding stop - 5 41.0 0.0 1.0 0.0 0.0 2.0 -4,-1 0.0002 - -2.0 MINOR ENSMUSG00000044367 Slc16a13 ENSMUST00000159867 ENSMUSP00000124687 TRANSLATION protein_coding stop - 3 76.0 0.0 1.0 0.0 0.0 2.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000044367 Slc16a13 ENSMUST00000060010 ENSMUSP00000053218 TRANSLATION protein_coding - CCDS24938.1 1 428.0 0.0 6.66 8.8 74.9 13.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000020455 Trim11 ENSMUST00000108810 ENSMUSP00000104438 TRANSLATION protein_coding - CCDS70195.1 1 483.0 12.0 3.83 0.0 213.8 0.0 -4,-5 0.1452 6 18.0 MINOR ENSMUSG00000020455 Trim11 ENSMUST00000108809 ENSMUSP00000104437 TRANSLATION protein_coding - - 1 253.0 12.0 2.23 0.0 84.3 0.0 -4,-5 0.0 3 8.802 MINOR ENSMUSG00000020455 Trim11 ENSMUST00000093061 ENSMUSP00000090749 TRANSLATION protein_coding - CCDS36168.1 1 467.0 12.0 3.53 8.3 213.8 0.0 -4,-5 1.0 7 20.4 PRINCIPAL:1 ENSMUSG00000020519 Sap30l ENSMUST00000020826 ENSMUSP00000020826 TRANSLATION protein_coding - CCDS36160.1 1 182.0 4.0 3.8 29.4 212.9 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000069804 Gm10277 ENSMUST00000092883 ENSMUSP00000090559 TRANSLATION protein_coding - - - 214.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5844 - 0.0 PRINCIPAL:1 ENSMUSG00000007777 Trappc2b ENSMUST00000007921 ENSMUSP00000007921 TRANSLATION protein_coding - CCDS36149.1 1 140.0 0.0 1.0 35.8 166.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000007777 Trappc2b ENSMUST00000109098 ENSMUSP00000104726 TRANSLATION protein_coding - CCDS36149.1 3 140.0 0.0 1.0 35.8 166.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000108265 Or2ak5 ENSMUST00000189911 ENSMUSP00000139574 TRANSLATION protein_coding - CCDS24741.1 - 306.0 0.0 1.0 3.7 159.0 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000108265 Or2ak5 ENSMUST00000214728 ENSMUSP00000149053 TRANSLATION protein_coding - CCDS24741.1 5 306.0 0.0 1.0 3.7 159.0 5.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000108265 Or2ak5 ENSMUST00000213944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018899 Irf1 ENSMUST00000123376 ENSMUSP00000122101 TRANSLATION protein_coding stop - 5 182.0 0.0 3.5 0.0 142.2 0.0 -4,-7 0.0141 - -2.0 MINOR ENSMUSG00000018899 Irf1 ENSMUST00000133291 ENSMUSP00000116656 TRANSLATION protein_coding stop - 3 132.0 0.0 3.5 0.0 142.2 0.0 -4,-7 0.0178 - -2.0 MINOR ENSMUSG00000018899 Irf1 ENSMUST00000108922 ENSMUSP00000104550 TRANSLATION protein_coding - CCDS48796.1 1 304.0 0.0 3.5 0.0 142.2 0.0 -4,-7 0.1624 1 12.0 MINOR ENSMUSG00000018899 Irf1 ENSMUST00000128336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018899 Irf1 ENSMUST00000108920 ENSMUSP00000104548 TRANSLATION protein_coding - CCDS24686.1 1 329.0 0.0 3.5 9.6 142.2 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000018899 Irf1 ENSMUST00000019043 ENSMUSP00000019043 TRANSLATION protein_coding - CCDS24686.1 1 329.0 0.0 3.5 9.6 142.2 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000018899 Irf1 ENSMUST00000142221 ENSMUSP00000118795 TRANSLATION nonsense_mediated_decay - - 2 51.0 0.0 0.75 0.0 25.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000018899 Irf1 ENSMUST00000153054 - NO_TRANSLATION retained_intron ENSMUSG00000018899 Irf1 ENSMUST00000138913 ENSMUSP00000118314 TRANSLATION protein_coding stop - 5 62.0 0.0 1.75 0.0 70.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000018899 Irf1 ENSMUST00000140866 ENSMUSP00000114315 TRANSLATION protein_coding stop - 5 199.0 0.0 3.5 0.0 142.2 0.0 -4,-7 0.0141 - -2.0 MINOR ENSMUSG00000059278 Naa38 ENSMUST00000124932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059278 Naa38 ENSMUST00000142126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059278 Naa38 ENSMUST00000144531 ENSMUSP00000123155 TRANSLATION protein_coding - CCDS24893.1 1 125.0 0.0 1.1 11.3 49.2 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000059278 Naa38 ENSMUST00000082283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020785 Camkk1 ENSMUST00000092937 ENSMUSP00000090613 TRANSLATION protein_coding - CCDS24993.1 1 505.0 17.0 7.462 9.4 207.0 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000020785 Camkk1 ENSMUST00000145834 ENSMUSP00000123441 TRANSLATION protein_coding start - 5 342.0 17.0 6.862 0.0 201.5 0.0 -4,-5 0.0059 9 -2.0 MINOR ENSMUSG00000020785 Camkk1 ENSMUST00000155720 - NO_TRANSLATION retained_intron ENSMUSG00000060918 Or1ad8 ENSMUST00000076514 ENSMUSP00000075832 TRANSLATION protein_coding - CCDS24646.1 - 307.0 0.0 1.0 4.3 169.5 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060918 Or1ad8 ENSMUST00000213415 ENSMUSP00000151005 TRANSLATION protein_coding - CCDS24646.1 5 307.0 0.0 1.0 4.3 169.5 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020439 Smtn ENSMUST00000154861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020439 Smtn ENSMUST00000156201 ENSMUSP00000118750 TRANSLATION protein_coding stop - 5 140.0 0.0 0.0 0.0 104.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020439 Smtn ENSMUST00000110011 ENSMUSP00000105638 TRANSLATION protein_coding - - 5 946.0 0.0 3.71 0.0 254.0 0.0 -4,-5 0.1184 33 7.4 ALTERNATIVE:2 ENSMUSG00000020439 Smtn ENSMUST00000136243 ENSMUSP00000117307 TRANSLATION protein_coding stop - 5 122.0 0.0 0.0 0.0 104.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020439 Smtn ENSMUST00000144635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020439 Smtn ENSMUST00000020718 ENSMUSP00000020718 TRANSLATION protein_coding - - 1 436.0 0.0 2.96 0.0 156.6 0.0 -4,-5 0.0004 10 5.7 MINOR ENSMUSG00000020439 Smtn ENSMUST00000151804 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020439 Smtn ENSMUST00000020721 ENSMUSP00000020721 TRANSLATION protein_coding - CCDS24366.1 1 921.0 0.0 3.46 0.8 261.5 0.0 -4,-5 1.0 34 7.502 PRINCIPAL:2 ENSMUSG00000020439 Smtn ENSMUST00000170588 ENSMUSP00000133155 TRANSLATION protein_coding - CCDS24366.1 1 921.0 0.0 3.46 0.8 261.5 0.0 -4,-5 1.0 34 7.502 PRINCIPAL:2 ENSMUSG00000020439 Smtn ENSMUST00000075118 ENSMUSP00000074621 TRANSLATION protein_coding - CCDS70129.1 1 923.0 0.0 2.96 0.8 256.7 0.0 -4,-5 0.539 33 6.3 MINOR ENSMUSG00000046605 B3gntl1 ENSMUST00000067399 ENSMUSP00000068590 TRANSLATION protein_coding - CCDS25780.1 1 357.0 16.0 9.9 3.1 77.7 0.0 -4,-6 1.0 - 18.91 PRINCIPAL:1 ENSMUSG00000046605 B3gntl1 ENSMUST00000062654 ENSMUSP00000049890 TRANSLATION protein_coding - - 1 260.0 16.0 6.65 0.0 78.9 0.0 -4,-6 0.0129 - 12.0 MINOR ENSMUSG00000038437 Mllt6 ENSMUST00000044730 ENSMUSP00000045445 TRANSLATION protein_coding - CCDS25323.1 1 1079.0 9.0 6.182 0.4 151.4 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:2 ENSMUSG00000038437 Mllt6 ENSMUST00000134158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038437 Mllt6 ENSMUST00000143220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038437 Mllt6 ENSMUST00000155835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038437 Mllt6 ENSMUST00000107586 ENSMUSP00000103212 TRANSLATION protein_coding - - 5 1109.0 9.0 6.182 0.4 151.4 0.0 -4,-5 0.3089 9 14.0 ALTERNATIVE:2 ENSMUSG00000038437 Mllt6 ENSMUST00000151729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000320 Alox12 ENSMUST00000000329 ENSMUSP00000000329 TRANSLATION protein_coding - CCDS24942.1 1 663.0 5.0 13.5 12.5 74.8 0.0 -1,-1 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000000320 Alox12 ENSMUST00000108574 ENSMUSP00000104214 TRANSLATION protein_coding - - 1 390.0 2.0 7.75 0.0 74.8 0.0 -1,-1 0.0304 6 8.0 MINOR ENSMUSG00000019368 Sec14l4 ENSMUST00000125351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019368 Sec14l4 ENSMUST00000019512 ENSMUSP00000019512 TRANSLATION protein_coding - CCDS24374.1 1 403.0 0.0 10.0 9.8 135.6 0.0 -4,-6 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000019368 Sec14l4 ENSMUST00000136222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019368 Sec14l4 ENSMUST00000134482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019368 Sec14l4 ENSMUST00000131171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019368 Sec14l4 ENSMUST00000137324 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019368 Sec14l4 ENSMUST00000126423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019368 Sec14l4 ENSMUST00000129689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038208 Pgap3 ENSMUST00000041218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038208 Pgap3 ENSMUST00000128897 ENSMUSP00000119668 TRANSLATION protein_coding - - 5 269.0 0.0 6.25 4.1 232.2 5.0 4,-1 0.1985 - 6.3 MINOR ENSMUSG00000038208 Pgap3 ENSMUST00000090827 ENSMUSP00000088337 TRANSLATION protein_coding - CCDS25348.1 1 320.0 0.0 7.25 9.2 312.8 7.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038208 Pgap3 ENSMUST00000128058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038208 Pgap3 ENSMUST00000125348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020516 Rps6kb1 ENSMUST00000058286 ENSMUSP00000053188 TRANSLATION protein_coding - CCDS25201.1 1 316.0 14.0 3.25 0.0 67.9 0.0 -4,-7 0.0018 2 3.336 MINOR ENSMUSG00000020516 Rps6kb1 ENSMUST00000131194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020516 Rps6kb1 ENSMUST00000020824 - NO_TRANSLATION retained_intron ENSMUSG00000020516 Rps6kb1 ENSMUST00000149392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020516 Rps6kb1 ENSMUST00000138810 ENSMUSP00000122756 TRANSLATION protein_coding stop - 3 74.0 9.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020516 Rps6kb1 ENSMUST00000154617 ENSMUSP00000119715 TRANSLATION protein_coding - CCDS48875.1 1 525.0 18.0 10.35 11.1 274.1 0.0 -4,-7 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000020516 Rps6kb1 ENSMUST00000151748 - NO_TRANSLATION retained_intron ENSMUSG00000034677 Gpr142 ENSMUST00000106584 ENSMUSP00000102194 TRANSLATION protein_coding - CCDS83922.1 1 371.0 0.0 0.53 0.0 51.5 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000034677 Gpr142 ENSMUST00000045319 ENSMUSP00000045029 TRANSLATION protein_coding - CCDS25611.1 1 365.0 0.0 0.2 0.0 50.1 7.0 -4,-5 0.2893 - 8.1 MINOR ENSMUSG00000041189 Chrnb1 ENSMUST00000129381 - NO_TRANSLATION retained_intron ENSMUSG00000041189 Chrnb1 ENSMUST00000045971 ENSMUSP00000047270 TRANSLATION protein_coding - CCDS24910.1 1 501.0 0.0 7.48 1.0 460.7 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041189 Chrnb1 ENSMUST00000154816 - NO_TRANSLATION retained_intron ENSMUSG00000041189 Chrnb1 ENSMUST00000147791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078256 Gm11565 ENSMUST00000105053 ENSMUSP00000100674 TRANSLATION protein_coding - CCDS48925.1 - 156.0 0.0 0.0 0.0 44.2 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038534 Osbpl7 ENSMUST00000142406 - NO_TRANSLATION retained_intron ENSMUSG00000038534 Osbpl7 ENSMUST00000090020 ENSMUSP00000087474 TRANSLATION protein_coding - - 1 837.0 0.0 8.664 8.0 469.3 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000038534 Osbpl7 ENSMUST00000154084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038534 Osbpl7 ENSMUST00000143360 - NO_TRANSLATION retained_intron ENSMUSG00000038534 Osbpl7 ENSMUST00000142399 - NO_TRANSLATION retained_intron ENSMUSG00000044787 Spata32 ENSMUST00000103076 ENSMUSP00000099365 TRANSLATION protein_coding - CCDS25515.1 1 334.0 0.0 0.0 0.0 280.3 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000046215 Rprml ENSMUST00000057870 ENSMUSP00000053993 TRANSLATION protein_coding - CCDS25520.1 - 117.0 0.0 0.4 11.0 0.0 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000017713 Tha1 ENSMUST00000153989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017713 Tha1 ENSMUST00000138354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017713 Tha1 ENSMUST00000033230 ENSMUSP00000033230 TRANSLATION protein_coding - CCDS48993.1 1 400.0 12.0 6.5 0.0 297.8 0.0 -3,0 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000009076 Zmat5 ENSMUST00000009220 ENSMUSP00000009220 TRANSLATION protein_coding - CCDS24389.1 1 170.0 8.0 3.0 19.6 62.5 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000009076 Zmat5 ENSMUST00000154341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009076 Zmat5 ENSMUST00000141970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044056 Efcab9 ENSMUST00000054327 ENSMUSP00000060205 TRANSLATION protein_coding - CCDS24528.1 1 216.0 5.0 4.5 0.4 0.0 0.0 -4,-5 0.9353 - 11.0 PRINCIPAL:1 ENSMUSG00000044056 Efcab9 ENSMUST00000109377 ENSMUSP00000105002 TRANSLATION protein_coding - - 3 112.0 3.0 2.0 0.0 0.0 0.0 -4,-7 0.0132 - 4.002 MINOR ENSMUSG00000000094 Tbx4 ENSMUST00000108047 ENSMUSP00000103682 TRANSLATION protein_coding - CCDS25196.1 5 552.0 5.0 5.0 9.9 272.8 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000000094 Tbx4 ENSMUST00000000096 ENSMUSP00000000096 TRANSLATION protein_coding - CCDS25196.1 1 552.0 5.0 5.0 9.9 272.8 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000000094 Tbx4 ENSMUST00000108045 ENSMUSP00000103680 TRANSLATION protein_coding - CCDS48874.1 1 452.0 2.0 4.0 2.4 217.1 0.0 -4,-7 0.0925 - 9.131 MINOR ENSMUSG00000017493 Igfbp4 ENSMUST00000017637 ENSMUSP00000017637 TRANSLATION protein_coding - CCDS25371.1 1 254.0 0.0 4.066 5.9 108.6 0.0 2,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000017493 Igfbp4 ENSMUST00000177105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017493 Igfbp4 ENSMUST00000130530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017493 Igfbp4 ENSMUST00000123946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017493 Igfbp4 ENSMUST00000177092 ENSMUSP00000135112 TRANSLATION protein_coding start - 3 122.0 0.0 2.066 0.0 28.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017493 Igfbp4 ENSMUST00000140772 ENSMUSP00000135727 TRANSLATION protein_coding - - 2 161.0 0.0 2.066 0.0 70.8 0.0 -4,-7 0.0009 2 5.73 MINOR ENSMUSG00000078970 Dnaaf10 ENSMUST00000151431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078970 Dnaaf10 ENSMUST00000046955 ENSMUSP00000040938 TRANSLATION protein_coding - CCDS24450.1 1 357.0 0.0 8.0 25.0 20.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000020792 Exoc7 ENSMUST00000136417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020792 Exoc7 ENSMUST00000124281 ENSMUSP00000115737 TRANSLATION protein_coding stop - 5 60.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020792 Exoc7 ENSMUST00000106413 ENSMUSP00000102021 TRANSLATION protein_coding - CCDS83935.1 5 684.0 0.0 12.435 20.3 266.9 0.0 -4,-5 0.9456 25 9.998 PRINCIPAL:3 ENSMUSG00000020792 Exoc7 ENSMUST00000133468 ENSMUSP00000121150 TRANSLATION protein_coding stop - 2 105.0 0.0 1.35 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020792 Exoc7 ENSMUST00000126731 ENSMUSP00000121794 TRANSLATION protein_coding start/stop - 5 288.0 0.0 2.81 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000020792 Exoc7 ENSMUST00000141938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020792 Exoc7 ENSMUST00000021147 ENSMUSP00000021147 TRANSLATION protein_coding - CCDS25664.1 1 697.0 0.0 12.535 16.5 270.2 0.0 -4,-5 0.9333 25 10.414 MINOR ENSMUSG00000020792 Exoc7 ENSMUST00000106411 ENSMUSP00000102019 TRANSLATION protein_coding - CCDS48983.1 1 653.0 0.0 12.935 19.4 266.9 0.0 -4,-5 1.0 24 10.812 ALTERNATIVE:1 ENSMUSG00000020792 Exoc7 ENSMUST00000139699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020792 Exoc7 ENSMUST00000155288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017631 Abr ENSMUST00000130364 ENSMUSP00000135174 TRANSLATION nonsense_mediated_decay start - 5 146.0 0.0 2.5 0.0 39.4 0.0 -2,-6 0.0 2 -2.0 MINOR ENSMUSG00000017631 Abr ENSMUST00000131059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017631 Abr ENSMUST00000065028 ENSMUSP00000068982 TRANSLATION protein_coding - CCDS70246.1 1 641.0 0.0 6.35 23.3 268.7 0.0 -2,-6 0.8027 13 3.14 MINOR ENSMUSG00000017631 Abr ENSMUST00000137261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017631 Abr ENSMUST00000072740 ENSMUSP00000072522 TRANSLATION protein_coding - CCDS25066.1 5 859.0 0.0 10.63 29.4 340.8 0.0 -4,-6 1.0 22 10.198 MINOR ENSMUSG00000017631 Abr ENSMUST00000151526 ENSMUSP00000135544 TRANSLATION protein_coding stop - 3 161.0 0.0 4.45 0.0 81.8 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000017631 Abr ENSMUST00000176179 ENSMUSP00000135515 TRANSLATION protein_coding stop - 2 128.0 0.0 2.83 0.0 36.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000017631 Abr ENSMUST00000094012 ENSMUSP00000091551 TRANSLATION protein_coding - CCDS36231.1 1 871.0 0.0 10.63 0.0 340.8 0.0 -4,-2 0.2778 22 6.198 MINOR ENSMUSG00000017631 Abr ENSMUST00000108408 ENSMUSP00000104045 TRANSLATION protein_coding - CCDS83843.1 5 822.0 0.0 10.63 18.2 340.8 0.0 -4,-5 0.824 21 8.622 MINOR ENSMUSG00000017631 Abr ENSMUST00000176024 ENSMUSP00000135691 TRANSLATION protein_coding stop - 5 91.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000017631 Abr ENSMUST00000108407 ENSMUSP00000104044 TRANSLATION protein_coding - CCDS25067.1 1 813.0 0.0 10.63 14.8 340.8 0.0 -4,-5 0.7995 22 8.142 MINOR ENSMUSG00000017631 Abr ENSMUST00000141442 - NO_TRANSLATION retained_intron ENSMUSG00000017631 Abr ENSMUST00000238684 ENSMUSP00000158745 TRANSLATION protein_coding - - - 1185.0 0.0 10.63 0.1 437.5 0.0 -4,-5 0.6794 23 12.0 PRINCIPAL:1 ENSMUSG00000094091 Ankrd40cl ENSMUST00000208510 ENSMUSP00000153501 TRANSLATION protein_coding - - 5 145.0 0.0 2.5 5.2 0.0 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000094091 Ankrd40cl ENSMUST00000249221 ENSMUSP00000159610 TRANSLATION protein_coding - - - 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0137 - 0.0 MINOR ENSMUSG00000020362 Cnot6 ENSMUST00000145353 ENSMUSP00000121239 TRANSLATION protein_coding - CCDS70172.1 5 557.0 0.0 6.705 33.3 113.0 0.0 -4,-5 0.9909 5 12.0 PRINCIPAL:3 ENSMUSG00000020362 Cnot6 ENSMUST00000145424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020362 Cnot6 ENSMUST00000109183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020362 Cnot6 ENSMUST00000020624 ENSMUSP00000020624 TRANSLATION protein_coding - CCDS24621.1 1 552.0 0.0 6.705 33.3 113.0 0.0 -4,-5 1.0 4 12.0 ALTERNATIVE:1 ENSMUSG00000020362 Cnot6 ENSMUST00000151090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013646 Sh3bp5l ENSMUST00000149701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013646 Sh3bp5l ENSMUST00000073128 ENSMUSP00000072872 TRANSLATION protein_coding - CCDS24728.1 1 392.0 0.0 4.25 9.5 318.1 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000013646 Sh3bp5l ENSMUST00000116376 ENSMUSP00000112077 TRANSLATION protein_coding - CCDS24728.1 1 392.0 0.0 4.25 9.5 318.1 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000013646 Sh3bp5l ENSMUST00000127119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013646 Sh3bp5l ENSMUST00000154278 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006930 Hap1 ENSMUST00000174635 ENSMUSP00000133831 TRANSLATION protein_coding start/stop - 3 155.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000006930 Hap1 ENSMUST00000173630 ENSMUSP00000134050 TRANSLATION protein_coding start/stop - 3 326.0 0.0 0.0 0.0 148.9 0.0 -4,-5 0.0008 6 -2.0 MINOR ENSMUSG00000006930 Hap1 ENSMUST00000138603 ENSMUSP00000133356 TRANSLATION protein_coding - CCDS56806.1 5 628.0 0.0 0.0 0.1 353.3 0.0 -4,-5 0.3152 14 0.0 ALTERNATIVE:2 ENSMUSG00000006930 Hap1 ENSMUST00000146878 ENSMUSP00000134625 TRANSLATION protein_coding stop - 5 181.0 0.0 0.0 0.0 208.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000006930 Hap1 ENSMUST00000103124 ENSMUSP00000099413 TRANSLATION protein_coding - CCDS25419.1 1 598.0 0.0 0.0 0.1 353.3 0.0 -4,-5 1.0 13 0.0 PRINCIPAL:2 ENSMUSG00000087512 Ccdc201 ENSMUST00000122910 ENSMUSP00000147806 TRANSLATION protein_coding - - 5 206.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.6876 - 6.0 PRINCIPAL:1 ENSMUSG00000020886 Dlg4 ENSMUST00000108589 ENSMUSP00000104230 TRANSLATION protein_coding - - 5 767.0 14.0 18.41 3.6 634.8 0.0 0,-3 0.2983 26 14.406 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000134376 ENSMUSP00000115206 TRANSLATION protein_coding stop - 5 238.0 0.0 6.532 0.0 181.2 0.0 -4,-5 0.0001 3 -2.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000018700 ENSMUSP00000018700 TRANSLATION protein_coding - - 1 664.0 14.0 16.73 13.0 592.3 0.0 -4,-5 0.648 26 14.178 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000232659 ENSMUSP00000156267 TRANSLATION protein_coding start/stop - - 130.0 0.0 3.122 0.0 103.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000232115 ENSMUSP00000156246 TRANSLATION protein_coding stop - - 198.0 0.0 6.32 0.0 158.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000138004 - NO_TRANSLATION retained_intron ENSMUSG00000020886 Dlg4 ENSMUST00000124568 ENSMUSP00000121053 TRANSLATION protein_coding stop - 3 130.0 0.0 3.61 0.0 99.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000123687 ENSMUSP00000134545 TRANSLATION nonsense_mediated_decay - - 5 668.0 10.0 15.66 0.0 526.4 0.0 0,-3 0.0301 20 -2.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000231628 ENSMUSP00000156059 TRANSLATION protein_coding - - - 664.0 14.0 16.73 13.0 592.3 0.0 -4,-5 0.648 26 14.178 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000231415 ENSMUSP00000156345 TRANSLATION protein_coding - CCDS48829.1 - 721.0 14.0 18.64 10.2 641.7 0.0 -4,-5 1.0 26 17.068 PRINCIPAL:4 ENSMUSG00000020886 Dlg4 ENSMUST00000232266 ENSMUSP00000156189 TRANSLATION protein_coding stop - - 205.0 0.0 6.4 0.0 201.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000133140 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020886 Dlg4 ENSMUST00000108588 ENSMUSP00000104229 TRANSLATION protein_coding - CCDS36202.1 1 724.0 14.0 18.64 8.2 634.8 0.0 -4,-5 0.9098 26 16.4 ALTERNATIVE:1 ENSMUSG00000020886 Dlg4 ENSMUST00000231506 ENSMUSP00000155973 TRANSLATION protein_coding - - - 764.0 14.0 18.41 3.6 641.7 0.0 0,-3 0.3255 26 14.406 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000108586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020886 Dlg4 ENSMUST00000232002 ENSMUSP00000156019 TRANSLATION protein_coding - - - 254.0 0.0 7.48 0.0 199.5 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000231221 ENSMUSP00000155975 TRANSLATION protein_coding - - - 273.0 0.0 8.23 0.0 208.2 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000132597 ENSMUSP00000114165 TRANSLATION protein_coding stop - 5 242.0 0.0 7.48 0.0 231.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000231452 ENSMUSP00000155942 TRANSLATION protein_coding - - - 664.0 14.0 16.73 13.0 592.3 0.0 -4,-5 0.648 26 14.178 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000143920 ENSMUSP00000136419 TRANSLATION protein_coding stop - 2 115.0 0.0 3.49 0.0 82.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000135916 ENSMUSP00000135994 TRANSLATION protein_coding stop - 2 51.0 0.0 1.33 0.0 38.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020886 Dlg4 ENSMUST00000131497 - NO_TRANSLATION retained_intron ENSMUSG00000078695 Cisd3 ENSMUST00000107585 ENSMUSP00000103211 TRANSLATION protein_coding - - 1 134.0 19.0 2.0 0.0 73.2 0.0 -1,1 0.715 4 12.0 PRINCIPAL:2 ENSMUSG00000078695 Cisd3 ENSMUST00000107584 ENSMUSP00000103210 TRANSLATION protein_coding - - 1 115.0 19.0 2.0 0.0 73.6 0.0 -4,-2 0.0661 4 12.0 ALTERNATIVE:2 ENSMUSG00000078695 Cisd3 ENSMUST00000107583 ENSMUSP00000103209 TRANSLATION protein_coding - CCDS48896.1 1 137.0 19.0 2.0 0.7 73.2 0.0 -4,-2 0.3966 4 12.0 ALTERNATIVE:2 ENSMUSG00000078695 Cisd3 ENSMUST00000145623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020473 Aebp1 ENSMUST00000109829 ENSMUSP00000105454 TRANSLATION protein_coding - - 1 748.0 0.0 6.91 0.0 385.0 0.0 -4,-6 0.0617 20 7.598 ALTERNATIVE:2 ENSMUSG00000020473 Aebp1 ENSMUST00000102923 ENSMUSP00000099987 TRANSLATION protein_coding - CCDS24406.1 1 1128.0 0.0 7.11 0.1 385.0 0.0 1,-2 1.0 23 8.0 PRINCIPAL:2 ENSMUSG00000020473 Aebp1 ENSMUST00000138103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078157 Fem1al ENSMUST00000104962 ENSMUSP00000100568 TRANSLATION protein_coding - CCDS78924.1 - 654.0 0.0 0.64 0.4 173.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000001036 Epn2 ENSMUST00000137525 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001036 Epn2 ENSMUST00000179936 ENSMUSP00000136950 TRANSLATION protein_coding - CCDS56780.1 1 640.0 9.0 3.1 0.4 176.7 0.0 -4,-7 0.4336 13 14.0 MINOR ENSMUSG00000001036 Epn2 ENSMUST00000108713 ENSMUSP00000104353 TRANSLATION protein_coding - CCDS56779.1 1 583.0 9.0 3.1 0.4 176.7 0.0 -4,-7 0.3354 12 14.0 MINOR ENSMUSG00000001036 Epn2 ENSMUST00000148956 ENSMUSP00000122514 TRANSLATION protein_coding start/stop - 5 274.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000001036 Epn2 ENSMUST00000108712 ENSMUSP00000104352 TRANSLATION protein_coding - - 5 634.0 9.0 3.1 7.0 176.7 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:3 ENSMUSG00000001036 Epn2 ENSMUST00000153984 ENSMUSP00000122666 TRANSLATION protein_coding start/stop - 3 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001036 Epn2 ENSMUST00000147501 ENSMUSP00000117389 TRANSLATION protein_coding stop - 3 79.0 9.0 1.5 0.0 96.3 0.0 -4,-7 0.0005 1 -2.0 MINOR ENSMUSG00000001036 Epn2 ENSMUST00000146455 ENSMUSP00000123675 TRANSLATION protein_coding stop - 3 17.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000001036 Epn2 ENSMUST00000108711 ENSMUSP00000104351 TRANSLATION protein_coding - - 5 577.0 9.0 3.1 6.8 176.7 0.0 -4,-7 0.8242 12 15.934 ALTERNATIVE:1 ENSMUSG00000001036 Epn2 ENSMUST00000151545 - NO_TRANSLATION retained_intron ENSMUSG00000001036 Epn2 ENSMUST00000001063 ENSMUSP00000001063 TRANSLATION protein_coding - CCDS24816.1 1 595.0 9.0 3.1 0.4 176.7 0.0 -4,-7 0.3384 13 14.0 MINOR ENSMUSG00000001036 Epn2 ENSMUST00000178202 ENSMUSP00000136553 TRANSLATION protein_coding - CCDS24816.1 5 595.0 9.0 3.1 0.4 176.7 0.0 -4,-7 0.3384 13 14.0 MINOR ENSMUSG00000001036 Epn2 ENSMUST00000141335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037907 Ankrd13b ENSMUST00000037593 ENSMUSP00000073584 TRANSLATION protein_coding - - 1 626.0 0.0 2.38 3.9 382.0 0.0 -4,-7 1.0 2 7.0 PRINCIPAL:2 ENSMUSG00000037907 Ankrd13b ENSMUST00000092892 ENSMUSP00000090568 TRANSLATION protein_coding - CCDS36233.1 5 696.0 0.0 2.38 0.0 382.0 0.0 -4,-7 0.3137 2 6.0 ALTERNATIVE:2 ENSMUSG00000037907 Ankrd13b ENSMUST00000127291 ENSMUSP00000118247 TRANSLATION protein_coding start/stop - 5 213.0 0.0 0.0 0.0 78.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037907 Ankrd13b ENSMUST00000143872 - NO_TRANSLATION retained_intron ENSMUSG00000037907 Ankrd13b ENSMUST00000135227 - NO_TRANSLATION retained_intron ENSMUSG00000037907 Ankrd13b ENSMUST00000145934 ENSMUSP00000119633 TRANSLATION protein_coding start - 2 345.0 0.0 0.0 0.0 275.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000047444 Or3a10 ENSMUST00000050678 ENSMUSP00000049558 TRANSLATION protein_coding - CCDS25023.1 - 315.0 0.0 1.0 11.0 187.7 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047444 Or3a10 ENSMUST00000206280 ENSMUSP00000146141 TRANSLATION protein_coding - CCDS25023.1 3 315.0 0.0 1.0 11.0 187.7 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047444 Or3a10 ENSMUST00000214111 ENSMUSP00000148999 TRANSLATION protein_coding - CCDS25023.1 5 315.0 0.0 1.0 11.0 187.7 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047444 Or3a10 ENSMUST00000125093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036117 Il5 ENSMUST00000048605 ENSMUSP00000043369 TRANSLATION protein_coding - CCDS24685.1 1 133.0 0.0 3.33 3.8 203.5 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000020702 Ccl1 ENSMUST00000108189 ENSMUSP00000103824 TRANSLATION protein_coding - CCDS36249.1 1 92.0 0.0 1.9 0.8 62.2 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020702 Ccl1 ENSMUST00000021043 ENSMUSP00000021043 TRANSLATION protein_coding - - 1 85.0 0.0 1.15 0.0 29.7 0.0 3,-1 0.0043 - 6.492 MINOR ENSMUSG00000020702 Ccl1 ENSMUST00000138333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018068 Ints2 ENSMUST00000134883 - NO_TRANSLATION retained_intron ENSMUSG00000018068 Ints2 ENSMUST00000146421 - NO_TRANSLATION retained_intron ENSMUSG00000018068 Ints2 ENSMUST00000141756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018068 Ints2 ENSMUST00000130614 - NO_TRANSLATION retained_intron ENSMUSG00000018068 Ints2 ENSMUST00000018212 ENSMUSP00000018212 TRANSLATION protein_coding - CCDS25198.1 1 1198.0 0.0 15.78 12.2 1587.1 0.0 -4,-7 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000018068 Ints2 ENSMUST00000108039 ENSMUSP00000103674 TRANSLATION protein_coding - CCDS25198.1 1 1198.0 0.0 15.78 12.2 1587.1 0.0 -4,-7 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000018068 Ints2 ENSMUST00000134828 ENSMUSP00000135300 TRANSLATION nonsense_mediated_decay start - 3 67.0 0.0 1.5 0.0 48.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000018068 Ints2 ENSMUST00000132024 ENSMUSP00000114859 TRANSLATION protein_coding stop - 3 140.0 0.0 2.0 0.0 162.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000018068 Ints2 ENSMUST00000127745 - NO_TRANSLATION retained_intron ENSMUSG00000018068 Ints2 ENSMUST00000139285 ENSMUSP00000119084 TRANSLATION protein_coding stop - 3 189.0 0.0 1.58 0.0 232.9 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000018068 Ints2 ENSMUST00000136469 ENSMUSP00000116633 TRANSLATION protein_coding stop - 2 97.0 0.0 1.0 0.0 101.8 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000037001 Zfp39 ENSMUST00000102703 ENSMUSP00000099764 TRANSLATION protein_coding - CCDS24752.1 1 718.0 54.0 0.6 0.4 306.7 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000057113 Npm1 ENSMUST00000146759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057113 Npm1 ENSMUST00000093201 ENSMUSP00000090891 TRANSLATION protein_coding - - 5 264.0 0.0 5.6 1.0 275.9 0.0 -4,-5 0.2045 8 12.0 MINOR ENSMUSG00000057113 Npm1 ENSMUST00000141881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057113 Npm1 ENSMUST00000109354 ENSMUSP00000104978 TRANSLATION protein_coding - CCDS56765.1 1 257.0 0.0 4.35 3.5 159.4 0.0 -4,-5 0.1165 8 4.246 MINOR ENSMUSG00000057113 Npm1 ENSMUST00000075641 ENSMUSP00000075067 TRANSLATION protein_coding - CCDS24532.1 1 292.0 0.0 5.6 14.4 275.9 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000057113 Npm1 ENSMUST00000101375 ENSMUSP00000098926 TRANSLATION protein_coding - - 1 285.0 0.0 4.35 0.0 159.4 0.0 -4,-5 0.0131 8 3.498 MINOR ENSMUSG00000010025 Aldh3a2 ENSMUST00000141368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010025 Aldh3a2 ENSMUST00000108715 ENSMUSP00000104355 TRANSLATION protein_coding - - 1 487.0 30.0 8.83 8.0 299.2 0.0 -4,0 0.7503 13 19.984 MINOR ENSMUSG00000010025 Aldh3a2 ENSMUST00000074127 ENSMUSP00000073764 TRANSLATION protein_coding - CCDS24809.1 1 484.0 30.0 8.83 15.1 299.2 0.0 -4,0 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000010025 Aldh3a2 ENSMUST00000149298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010025 Aldh3a2 ENSMUST00000066277 ENSMUSP00000067767 TRANSLATION protein_coding - - 2 532.0 30.0 8.83 0.0 299.2 0.0 -4,0 0.0859 13 18.0 MINOR ENSMUSG00000010025 Aldh3a2 ENSMUST00000128991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010025 Aldh3a2 ENSMUST00000208086 ENSMUSP00000147199 TRANSLATION protein_coding start - 5 128.0 1.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010025 Aldh3a2 ENSMUST00000147291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072553 Gm525 ENSMUST00000100619 ENSMUSP00000098184 TRANSLATION protein_coding - CCDS36279.1 1 90.0 0.0 0.0 18.8 157.8 0.0 3,-2 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000072553 Gm525 ENSMUST00000127186 ENSMUSP00000121160 TRANSLATION protein_coding start - 5 65.0 0.0 0.0 0.0 139.3 0.0 -4,-6 0.0063 - -2.0 MINOR ENSMUSG00000018651 Tada2a ENSMUST00000156151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018651 Tada2a ENSMUST00000018795 ENSMUSP00000018795 TRANSLATION protein_coding - CCDS25183.1 1 443.0 8.0 5.45 28.9 74.7 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000018651 Tada2a ENSMUST00000125566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018651 Tada2a ENSMUST00000134994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018651 Tada2a ENSMUST00000141852 ENSMUSP00000119022 TRANSLATION protein_coding stop - 3 235.0 0.0 2.25 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020857 Nme2 ENSMUST00000021217 ENSMUSP00000021217 TRANSLATION protein_coding - CCDS25246.1 1 152.0 10.0 4.0 0.0 190.6 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000020857 Nme2 ENSMUST00000072566 ENSMUSP00000103476 TRANSLATION protein_coding - CCDS25246.1 1 152.0 10.0 4.0 0.0 190.6 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000042331 Specc1 ENSMUST00000202744 ENSMUSP00000144483 TRANSLATION protein_coding - - 3 121.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000202179 ENSMUSP00000144300 TRANSLATION protein_coding - CCDS78966.1 1 978.0 0.0 3.0 8.0 75.7 0.0 -4,-5 0.9225 17 10.562 ALTERNATIVE:1 ENSMUSG00000042331 Specc1 ENSMUST00000202389 ENSMUSP00000144055 TRANSLATION protein_coding - - 5 1067.0 0.0 3.0 2.4 75.7 0.0 -4,-7 0.4352 21 8.513 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000201671 ENSMUSP00000144030 TRANSLATION protein_coding - - 5 790.0 0.0 0.0 2.0 0.0 0.0 -4,-7 0.0843 17 0.366 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000108709 ENSMUSP00000104349 TRANSLATION protein_coding - - 5 1067.0 0.0 3.0 2.4 75.7 0.0 -4,-7 0.4352 21 8.513 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000201866 - NO_TRANSLATION retained_intron ENSMUSG00000042331 Specc1 ENSMUST00000200742 - NO_TRANSLATION retained_intron ENSMUSG00000042331 Specc1 ENSMUST00000092415 ENSMUSP00000090071 TRANSLATION protein_coding - - 5 987.0 0.0 3.0 2.4 75.7 0.0 -4,-5 0.3498 17 8.513 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000201624 ENSMUSP00000144659 TRANSLATION protein_coding - - 5 790.0 0.0 0.0 2.0 0.0 0.0 -4,-7 0.0843 17 0.366 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000202905 ENSMUSP00000144311 TRANSLATION protein_coding - - 5 1067.0 0.0 3.0 2.4 75.7 0.0 -4,-7 0.4352 21 8.513 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000049836 ENSMUSP00000063102 TRANSLATION protein_coding - - 5 790.0 0.0 0.0 2.0 0.0 0.0 -4,-7 0.0843 17 0.366 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000136971 - NO_TRANSLATION retained_intron ENSMUSG00000042331 Specc1 ENSMUST00000201723 ENSMUSP00000144542 TRANSLATION protein_coding - - 5 710.0 0.0 0.0 2.0 0.0 0.0 -4,-5 0.0751 13 0.366 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000202869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042331 Specc1 ENSMUST00000202178 ENSMUSP00000144161 TRANSLATION protein_coding - CCDS78964.1 5 781.0 0.0 0.0 8.5 0.0 0.0 -4,-7 0.644 17 2.745 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000201015 ENSMUSP00000144174 TRANSLATION protein_coding - - 5 407.0 0.0 3.0 1.0 75.7 0.0 -4,-5 0.2488 8 8.0 MINOR ENSMUSG00000042331 Specc1 ENSMUST00000201364 ENSMUSP00000143853 TRANSLATION protein_coding - CCDS78965.1 5 1058.0 0.0 3.0 9.2 75.7 0.0 -4,-7 1.0 21 11.0 PRINCIPAL:3 ENSMUSG00000000983 Wfdc18 ENSMUST00000001009 ENSMUSP00000001009 TRANSLATION protein_coding - CCDS25175.1 1 74.0 0.0 1.75 0.4 44.7 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000000983 Wfdc18 ENSMUST00000135654 ENSMUSP00000137823 TRANSLATION nonsense_mediated_decay start - 3 73.0 0.0 1.75 0.1 44.7 0.0 4,-1 0.2454 1 -2.0 MINOR ENSMUSG00000000983 Wfdc18 ENSMUST00000139762 - NO_TRANSLATION retained_intron ENSMUSG00000020713 Gh ENSMUST00000103071 ENSMUSP00000099360 TRANSLATION protein_coding - CCDS25554.1 1 216.0 0.0 3.8 10.9 154.5 0.0 3,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003518 Dusp3 ENSMUST00000125794 ENSMUSP00000135343 TRANSLATION protein_coding start - 3 118.0 7.0 2.5 0.0 97.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000003518 Dusp3 ENSMUST00000107173 ENSMUSP00000102791 TRANSLATION protein_coding - - 2 210.0 8.0 5.0 0.4 131.7 0.0 -4,-6 0.0818 7 18.0 MINOR ENSMUSG00000003518 Dusp3 ENSMUST00000176261 ENSMUSP00000135443 TRANSLATION protein_coding - - 3 145.0 1.0 3.325 0.0 46.5 0.0 -4,-5 0.0 5 4.29 MINOR ENSMUSG00000003518 Dusp3 ENSMUST00000143177 ENSMUSP00000135821 TRANSLATION protein_coding - - 3 82.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000003518 Dusp3 ENSMUST00000151678 ENSMUSP00000135384 TRANSLATION protein_coding - - 1 117.0 8.0 3.25 0.0 112.8 0.0 -4,-5 0.0012 4 13.368 MINOR ENSMUSG00000003518 Dusp3 ENSMUST00000107172 ENSMUSP00000102790 TRANSLATION protein_coding - CCDS25482.1 3 185.0 8.0 5.0 22.1 131.7 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000003518 Dusp3 ENSMUST00000003612 ENSMUSP00000003612 TRANSLATION protein_coding - CCDS25482.1 1 185.0 8.0 5.0 22.1 131.7 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000018567 Gabarap ENSMUST00000139007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018567 Gabarap ENSMUST00000144443 - NO_TRANSLATION retained_intron ENSMUSG00000018567 Gabarap ENSMUST00000018711 ENSMUSP00000018711 TRANSLATION protein_coding - CCDS24928.1 1 117.0 0.0 3.83 36.9 163.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000018567 Gabarap ENSMUST00000108592 ENSMUSP00000104233 TRANSLATION protein_coding - - 3 106.0 0.0 2.197 0.0 69.8 0.0 -4,-5 0.0004 1 3.114 MINOR ENSMUSG00000064252 Or2t29 ENSMUST00000108822 ENSMUSP00000104450 TRANSLATION protein_coding - - 3 331.0 0.0 1.0 1.1 162.4 8.0 -4,-6 0.2549 - 12.038 MINOR ENSMUSG00000064252 Or2t29 ENSMUST00000108823 ENSMUSP00000104451 TRANSLATION protein_coding - CCDS83813.1 - 318.0 0.0 1.0 6.3 162.4 8.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000064252 Or2t29 ENSMUST00000219448 ENSMUSP00000151648 TRANSLATION protein_coding - CCDS83813.1 5 318.0 0.0 1.0 6.3 162.4 8.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020527 Myo19 ENSMUST00000141173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020527 Myo19 ENSMUST00000123515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020527 Myo19 ENSMUST00000124152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020527 Myo19 ENSMUST00000124475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020527 Myo19 ENSMUST00000020837 ENSMUSP00000020837 TRANSLATION protein_coding - - 1 206.0 14.0 2.2995 0.0 134.8 0.0 -4,-5 0.0 4 4.002 MINOR ENSMUSG00000020527 Myo19 ENSMUST00000093969 ENSMUSP00000091502 TRANSLATION protein_coding - CCDS48871.1 5 963.0 17.0 12.78 4.1 660.6 0.0 -4,-5 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000020527 Myo19 ENSMUST00000141705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078853 Igtp ENSMUST00000094169 ENSMUSP00000091721 TRANSLATION protein_coding - - 1 53.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 0.0 MINOR ENSMUSG00000078853 Igtp ENSMUST00000168280 ENSMUSP00000130878 TRANSLATION protein_coding - - 1 72.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0 1 0.51 MINOR ENSMUSG00000078853 Igtp ENSMUST00000035266 ENSMUSP00000047356 TRANSLATION protein_coding - CCDS24725.1 1 423.0 15.0 2.34 0.0 528.6 0.0 -4,-6 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000017724 Etv4 ENSMUST00000107176 ENSMUSP00000102794 TRANSLATION protein_coding - CCDS83902.1 1 480.0 0.0 2.6 7.5 504.2 0.0 -4,-7 0.7815 - 10.241 MINOR ENSMUSG00000017724 Etv4 ENSMUST00000149099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017724 Etv4 ENSMUST00000131862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017724 Etv4 ENSMUST00000132040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017724 Etv4 ENSMUST00000129160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017724 Etv4 ENSMUST00000140970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017724 Etv4 ENSMUST00000137179 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017724 Etv4 ENSMUST00000154512 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017724 Etv4 ENSMUST00000131117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017724 Etv4 ENSMUST00000129995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017724 Etv4 ENSMUST00000017868 ENSMUSP00000017868 TRANSLATION protein_coding - CCDS83903.1 5 486.0 0.0 2.6 9.7 520.2 0.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000017724 Etv4 ENSMUST00000164750 ENSMUSP00000129261 TRANSLATION protein_coding - CCDS48937.1 1 485.0 0.0 2.6 9.7 512.4 0.0 -4,-7 0.9576 - 11.0 ALTERNATIVE:1 ENSMUSG00000001039 B9d1 ENSMUST00000138057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001039 B9d1 ENSMUST00000146562 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001039 B9d1 ENSMUST00000155176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001039 B9d1 ENSMUST00000140548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001039 B9d1 ENSMUST00000102657 ENSMUSP00000099717 TRANSLATION protein_coding - CCDS24815.1 1 204.0 0.0 2.925 12.7 183.1 0.0 1,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000001039 B9d1 ENSMUST00000127889 ENSMUSP00000117524 TRANSLATION protein_coding start - 5 118.0 0.0 1.2775 0.0 67.8 0.0 -4,-2 0.0001 2 -2.0 MINOR ENSMUSG00000078924 Gm12169 ENSMUST00000109228 ENSMUSP00000104851 TRANSLATION protein_coding - CCDS48777.1 5 250.0 0.0 1.3 0.4 56.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000018378 Cuedc1 ENSMUST00000018522 ENSMUSP00000018522 TRANSLATION protein_coding - CCDS25226.1 1 388.0 0.0 0.8 1.1 52.1 0.0 -4,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000018378 Cuedc1 ENSMUST00000142564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018378 Cuedc1 ENSMUST00000132377 - NO_TRANSLATION retained_intron ENSMUSG00000018378 Cuedc1 ENSMUST00000133149 - NO_TRANSLATION retained_intron ENSMUSG00000018378 Cuedc1 ENSMUST00000131964 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018378 Cuedc1 ENSMUST00000154812 ENSMUSP00000120867 TRANSLATION nonsense_mediated_decay - - 1 316.0 0.0 0.8 0.0 52.1 0.0 -4,-2 0.1051 3 -2.0 MINOR ENSMUSG00000018378 Cuedc1 ENSMUST00000125297 - NO_TRANSLATION retained_intron ENSMUSG00000049323 Smcr8 ENSMUST00000102667 ENSMUSP00000099728 TRANSLATION protein_coding - CCDS24798.1 - 785.0 0.0 0.16 0.0 33.3 0.0 -4,-5 0.2257 15 7.2 MINOR ENSMUSG00000049323 Smcr8 ENSMUST00000056907 ENSMUSP00000055926 TRANSLATION protein_coding - CCDS48814.1 1 935.0 0.0 0.8 11.0 32.9 0.0 -4,-5 1.0 18 14.928 PRINCIPAL:1 ENSMUSG00000034685 Fam171a2 ENSMUST00000152015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034685 Fam171a2 ENSMUST00000049057 ENSMUSP00000038486 TRANSLATION protein_coding - CCDS36344.1 1 822.0 0.0 0.0 2.5 1046.0 0.0 1,-2 1.0 9 7.0 PRINCIPAL:1 ENSMUSG00000034685 Fam171a2 ENSMUST00000145190 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040963 Asgr2 ENSMUST00000179757 - NO_TRANSLATION retained_intron ENSMUSG00000040963 Asgr2 ENSMUST00000143772 ENSMUSP00000136505 TRANSLATION protein_coding stop - 5 192.0 11.0 4.714 0.0 169.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040963 Asgr2 ENSMUST00000124721 ENSMUSP00000121189 TRANSLATION protein_coding stop - 5 226.0 2.0 4.214 0.0 216.8 1.0 -4,-6 0.0018 - -2.0 MINOR ENSMUSG00000040963 Asgr2 ENSMUST00000102572 ENSMUSP00000099632 TRANSLATION protein_coding - CCDS24934.1 1 301.0 11.0 5.964 8.7 284.7 1.0 -4,-6 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000071866 Ppia ENSMUST00000132846 ENSMUSP00000117987 TRANSLATION protein_coding - CCDS24419.1 1 164.0 8.0 3.83 30.1 160.4 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000071866 Ppia ENSMUST00000213200 ENSMUSP00000150020 TRANSLATION protein_coding - - 5 156.0 8.0 3.08 0.0 148.8 0.0 -4,-7 0.0055 9 15.804 MINOR ENSMUSG00000071866 Ppia ENSMUST00000155824 - NO_TRANSLATION retained_intron ENSMUSG00000071866 Ppia ENSMUST00000135789 - NO_TRANSLATION retained_intron ENSMUSG00000071866 Ppia ENSMUST00000137829 - NO_TRANSLATION retained_intron ENSMUSG00000071866 Ppia ENSMUST00000090749 ENSMUSP00000149662 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020935 Dcakd ENSMUST00000152965 - NO_TRANSLATION retained_intron ENSMUSG00000020935 Dcakd ENSMUST00000021313 ENSMUSP00000021313 TRANSLATION protein_coding - CCDS25510.1 1 231.0 8.0 3.75 20.0 206.7 0.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000020935 Dcakd ENSMUST00000134335 - NO_TRANSLATION retained_intron ENSMUSG00000020935 Dcakd ENSMUST00000155490 ENSMUSP00000118827 TRANSLATION protein_coding stop - 3 105.0 7.0 2.0 0.0 125.7 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000020935 Dcakd ENSMUST00000126365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020875 Hoxb9 ENSMUST00000000010 ENSMUSP00000000010 TRANSLATION protein_coding - CCDS25292.1 1 250.0 0.0 2.0 26.6 265.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000020875 Hoxb9 ENSMUST00000174042 ENSMUSP00000133919 TRANSLATION protein_coding - - 1 136.0 0.0 0.0 0.0 136.8 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000002741 Ykt6 ENSMUST00000002818 ENSMUSP00000002818 TRANSLATION protein_coding - CCDS24410.1 1 198.0 0.0 5.83 35.8 100.2 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000002741 Ykt6 ENSMUST00000143834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020790 Ankfy1 ENSMUST00000127610 ENSMUSP00000118252 TRANSLATION nonsense_mediated_decay - - 1 439.0 0.0 4.93 0.0 105.3 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000020790 Ankfy1 ENSMUST00000102548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020790 Ankfy1 ENSMUST00000150172 - NO_TRANSLATION retained_intron ENSMUSG00000020790 Ankfy1 ENSMUST00000147195 - NO_TRANSLATION retained_intron ENSMUSG00000020790 Ankfy1 ENSMUST00000155998 ENSMUSP00000118751 TRANSLATION protein_coding - CCDS24989.1 1 1169.0 8.0 17.0 16.6 343.4 0.0 -4,-5 1.0 27 22.0 PRINCIPAL:1 ENSMUSG00000020790 Ankfy1 ENSMUST00000132889 - NO_TRANSLATION retained_intron ENSMUSG00000078763 Slfn1 ENSMUST00000037994 ENSMUSP00000047782 TRANSLATION protein_coding - CCDS25157.1 1 337.0 0.0 0.3 0.1 52.6 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000034931 Dhx8 ENSMUST00000125409 - NO_TRANSLATION retained_intron ENSMUSG00000034931 Dhx8 ENSMUST00000141461 - NO_TRANSLATION retained_intron ENSMUSG00000034931 Dhx8 ENSMUST00000129741 ENSMUSP00000119430 TRANSLATION protein_coding stop - 5 1174.0 9.0 13.9 0.0 280.7 0.0 -2,-5 0.2736 21 -2.0 MINOR ENSMUSG00000034931 Dhx8 ENSMUST00000039152 ENSMUSP00000037251 TRANSLATION protein_coding - CCDS25479.1 1 1244.0 9.0 14.1 0.0 280.7 0.0 -2,-5 1.0 24 18.0 PRINCIPAL:1 ENSMUSG00000034931 Dhx8 ENSMUST00000156842 - NO_TRANSLATION retained_intron ENSMUSG00000020929 Eftud2 ENSMUST00000172611 ENSMUSP00000134316 TRANSLATION protein_coding start - 3 98.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020929 Eftud2 ENSMUST00000147368 - NO_TRANSLATION retained_intron ENSMUSG00000020929 Eftud2 ENSMUST00000148209 - NO_TRANSLATION retained_intron ENSMUSG00000020929 Eftud2 ENSMUST00000021306 ENSMUSP00000021306 TRANSLATION protein_coding - CCDS48948.1 5 972.0 15.0 23.99 27.2 528.8 0.0 -4,-5 0.9918 31 17.388 ALTERNATIVE:1 ENSMUSG00000020929 Eftud2 ENSMUST00000143323 - NO_TRANSLATION retained_intron ENSMUSG00000020929 Eftud2 ENSMUST00000173974 - NO_TRANSLATION retained_intron ENSMUSG00000020929 Eftud2 ENSMUST00000141273 - NO_TRANSLATION retained_intron ENSMUSG00000020929 Eftud2 ENSMUST00000138483 ENSMUSP00000134725 TRANSLATION nonsense_mediated_decay start - 5 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020929 Eftud2 ENSMUST00000107060 ENSMUSP00000102675 TRANSLATION protein_coding - CCDS48947.1 1 971.0 15.0 23.99 30.2 528.1 0.0 -4,-5 1.0 33 18.0 PRINCIPAL:3 ENSMUSG00000020929 Eftud2 ENSMUST00000131678 - NO_TRANSLATION retained_intron ENSMUSG00000020929 Eftud2 ENSMUST00000132543 ENSMUSP00000133732 TRANSLATION nonsense_mediated_decay start - 3 85.0 0.0 2.05 0.0 57.2 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000020929 Eftud2 ENSMUST00000173679 ENSMUSP00000134327 TRANSLATION protein_coding - - 5 962.0 15.0 23.66 1.0 502.7 0.0 -4,-5 0.1587 30 13.14 MINOR ENSMUSG00000020929 Eftud2 ENSMUST00000123833 - NO_TRANSLATION retained_intron ENSMUSG00000046755 Kif2b ENSMUST00000061019 ENSMUSP00000058084 TRANSLATION protein_coding - CCDS36281.1 - 668.0 11.0 0.8 3.5 305.4 0.0 -4,-7 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000020892 Aloxe3 ENSMUST00000176087 - NO_TRANSLATION retained_intron ENSMUSG00000020892 Aloxe3 ENSMUST00000021268 ENSMUSP00000021268 TRANSLATION protein_coding - CCDS24884.1 1 711.0 5.0 13.1 10.3 86.9 0.0 -4,-6 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000020892 Aloxe3 ENSMUST00000139257 - NO_TRANSLATION retained_intron ENSMUSG00000020892 Aloxe3 ENSMUST00000156874 - NO_TRANSLATION retained_intron ENSMUSG00000020892 Aloxe3 ENSMUST00000155324 - NO_TRANSLATION retained_intron ENSMUSG00000020892 Aloxe3 ENSMUST00000175661 ENSMUSP00000134814 TRANSLATION nonsense_mediated_decay - - 5 380.0 0.0 6.15 0.1 86.9 0.0 -4,-6 0.0427 3 -2.0 MINOR ENSMUSG00000055775 Myh8 ENSMUST00000108686 - NO_TRANSLATION retained_intron ENSMUSG00000055775 Myh8 ENSMUST00000108685 ENSMUSP00000104325 TRANSLATION protein_coding - - 5 195.0 8.0 3.12 0.0 158.9 0.0 -4,-5 0.0 5 0.666 MINOR ENSMUSG00000055775 Myh8 ENSMUST00000139052 - NO_TRANSLATION retained_intron ENSMUSG00000055775 Myh8 ENSMUST00000019625 ENSMUSP00000019625 TRANSLATION protein_coding - CCDS24857.1 1 1937.0 16.0 36.43 18.7 1540.9 0.0 -4,-5 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000020691 Mettl2 ENSMUST00000021030 ENSMUSP00000021030 TRANSLATION protein_coding - CCDS25538.1 1 389.0 17.0 6.0 0.0 62.0 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000020691 Mettl2 ENSMUST00000136214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020691 Mettl2 ENSMUST00000155460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020691 Mettl2 ENSMUST00000129012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020691 Mettl2 ENSMUST00000132185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020783 Ncbp3 ENSMUST00000151823 - NO_TRANSLATION retained_intron ENSMUSG00000020783 Ncbp3 ENSMUST00000021135 ENSMUSP00000021135 TRANSLATION protein_coding - CCDS24994.1 1 615.0 0.0 0.0 1.8 72.9 0.0 -4,-7 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000020783 Ncbp3 ENSMUST00000144262 - NO_TRANSLATION retained_intron ENSMUSG00000000049 Apoh ENSMUST00000133383 ENSMUSP00000115516 TRANSLATION protein_coding stop - 3 51.0 0.0 0.83 0.0 23.5 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000000049 Apoh ENSMUST00000152958 ENSMUSP00000114214 TRANSLATION protein_coding stop - 5 154.0 0.0 3.83 0.0 76.6 0.0 4,-1 0.0 8 -2.0 MINOR ENSMUSG00000000049 Apoh ENSMUST00000000049 ENSMUSP00000000049 TRANSLATION protein_coding - CCDS25574.1 1 345.0 0.0 7.33 8.7 277.7 0.0 4,-1 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000000049 Apoh ENSMUST00000146050 ENSMUSP00000123486 TRANSLATION protein_coding stop - 2 33.0 0.0 0.33 0.0 0.0 0.0 4,-1 0.0007 - -2.0 MINOR ENSMUSG00000038150 Ormdl3 ENSMUST00000052919 ENSMUSP00000053056 TRANSLATION protein_coding - CCDS25355.1 1 153.0 0.0 3.0 36.9 181.5 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020899 Pfas ENSMUST00000149703 ENSMUSP00000133984 TRANSLATION protein_coding start/stop - 5 117.0 0.0 1.86 0.0 46.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020899 Pfas ENSMUST00000152964 ENSMUSP00000121808 TRANSLATION protein_coding start - 3 473.0 3.0 3.598 0.0 356.6 0.0 -4,-5 0.0013 7 -2.0 MINOR ENSMUSG00000020899 Pfas ENSMUST00000173410 - NO_TRANSLATION retained_intron ENSMUSG00000020899 Pfas ENSMUST00000172915 - NO_TRANSLATION retained_intron ENSMUSG00000020899 Pfas ENSMUST00000021282 ENSMUSP00000021282 TRANSLATION protein_coding - CCDS48823.1 5 1337.0 3.0 14.458 9.6 442.5 0.0 -4,-2 1.0 31 18.0 PRINCIPAL:1 ENSMUSG00000020899 Pfas ENSMUST00000172987 - NO_TRANSLATION retained_intron ENSMUSG00000020899 Pfas ENSMUST00000146490 - NO_TRANSLATION retained_intron ENSMUSG00000044328 Trp53i13 ENSMUST00000124690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044328 Trp53i13 ENSMUST00000060417 ENSMUSP00000057592 TRANSLATION protein_coding - CCDS25081.1 1 385.0 0.0 0.6 0.0 0.0 0.0 3,-1 0.9415 - 4.5 PRINCIPAL:1 ENSMUSG00000044328 Trp53i13 ENSMUST00000136101 ENSMUSP00000122898 TRANSLATION protein_coding start/stop - 5 198.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0837 - -2.0 MINOR ENSMUSG00000044328 Trp53i13 ENSMUST00000139195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044328 Trp53i13 ENSMUST00000126857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020847 Rph3al ENSMUST00000066504 ENSMUSP00000064202 TRANSLATION protein_coding - CCDS25058.1 1 302.0 8.0 3.8 5.2 128.6 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000020847 Rph3al ENSMUST00000152035 ENSMUSP00000121304 TRANSLATION protein_coding stop - 3 99.0 1.0 1.75 0.0 46.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020847 Rph3al ENSMUST00000108420 ENSMUSP00000104058 TRANSLATION protein_coding - CCDS70243.1 3 141.0 4.0 2.25 0.0 68.2 0.0 -4,-6 0.0017 - 8.274 MINOR ENSMUSG00000020847 Rph3al ENSMUST00000121287 ENSMUSP00000113869 TRANSLATION protein_coding - CCDS25058.1 5 302.0 8.0 3.8 5.2 128.6 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000020847 Rph3al ENSMUST00000021208 ENSMUSP00000021208 TRANSLATION protein_coding - CCDS70243.1 1 141.0 4.0 2.25 0.0 68.2 0.0 -4,-6 0.0017 - 8.274 MINOR ENSMUSG00000020687 Cdc27 ENSMUST00000106961 ENSMUSP00000102574 TRANSLATION protein_coding - - 1 399.0 0.0 4.68 0.0 83.4 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000020687 Cdc27 ENSMUST00000127506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020687 Cdc27 ENSMUST00000093923 ENSMUSP00000091452 TRANSLATION protein_coding - CCDS36354.1 1 825.0 0.0 11.805 20.5 175.8 0.0 -4,-5 1.0 15 12.0 PRINCIPAL:4 ENSMUSG00000020687 Cdc27 ENSMUST00000106962 ENSMUSP00000102575 TRANSLATION protein_coding - - 5 831.0 0.0 11.805 16.5 175.8 0.0 -4,-5 0.8286 15 11.18 ALTERNATIVE:1 ENSMUSG00000020687 Cdc27 ENSMUST00000135303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018648 Dusp14 ENSMUST00000100705 ENSMUSP00000098271 TRANSLATION protein_coding - CCDS25182.1 1 198.0 9.0 2.0 20.5 126.7 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000018648 Dusp14 ENSMUST00000138208 ENSMUSP00000120773 TRANSLATION protein_coding stop - 2 78.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000018648 Dusp14 ENSMUST00000164891 ENSMUSP00000130624 TRANSLATION protein_coding - CCDS25182.1 1 198.0 9.0 2.0 20.5 126.7 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000018648 Dusp14 ENSMUST00000108101 ENSMUSP00000103736 TRANSLATION protein_coding - CCDS25182.1 1 198.0 9.0 2.0 20.5 126.7 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000018648 Dusp14 ENSMUST00000018792 ENSMUSP00000018792 TRANSLATION protein_coding - CCDS25182.1 2 198.0 9.0 2.0 20.5 126.7 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000009356 Lpo ENSMUST00000103177 ENSMUSP00000099466 TRANSLATION protein_coding - CCDS25218.1 1 710.0 24.0 9.648 8.4 588.6 0.0 3,-2 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000009356 Lpo ENSMUST00000157004 - NO_TRANSLATION retained_intron ENSMUSG00000009356 Lpo ENSMUST00000136446 ENSMUSP00000117763 TRANSLATION protein_coding stop - 2 145.0 0.0 1.648 0.0 0.0 0.0 3,-2 0.0017 2 -2.0 MINOR ENSMUSG00000018381 Abi3 ENSMUST00000143492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018381 Abi3 ENSMUST00000131049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018381 Abi3 ENSMUST00000137645 ENSMUSP00000119990 TRANSLATION protein_coding start/stop - 5 244.0 0.0 2.2 0.0 98.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000018381 Abi3 ENSMUST00000059026 ENSMUSP00000061893 TRANSLATION protein_coding - CCDS25283.1 1 367.0 0.0 4.55 1.5 144.2 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000018340 Anxa6 ENSMUST00000108883 ENSMUSP00000104511 TRANSLATION protein_coding - CCDS24705.1 1 673.0 14.0 19.58 14.3 655.2 0.0 -4,-5 1.0 43 18.0 ALTERNATIVE:1 ENSMUSG00000018340 Anxa6 ENSMUST00000102727 ENSMUSP00000099788 TRANSLATION protein_coding - CCDS48799.1 1 667.0 14.0 19.25 14.3 650.8 0.0 -4,-5 0.9451 44 17.14 PRINCIPAL:3 ENSMUSG00000018340 Anxa6 ENSMUST00000148298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020122 Egfr ENSMUST00000139722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020122 Egfr ENSMUST00000125984 ENSMUSP00000122632 TRANSLATION protein_coding start - 1 136.0 13.0 3.0 0.0 159.8 0.0 -4,-5 0.0005 3 -2.0 MINOR ENSMUSG00000020122 Egfr ENSMUST00000138518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020122 Egfr ENSMUST00000020329 ENSMUSP00000020329 TRANSLATION protein_coding - CCDS24443.1 1 1210.0 13.0 22.88 6.7 757.6 0.0 2,-2 1.0 27 20.0 PRINCIPAL:1 ENSMUSG00000020122 Egfr ENSMUST00000102884 ENSMUSP00000099948 TRANSLATION protein_coding - CCDS24444.1 1 655.0 13.0 14.63 0.0 462.3 0.0 2,-2 0.0393 20 6.0 MINOR ENSMUSG00000017421 Zfp207 ENSMUST00000165565 ENSMUSP00000132968 TRANSLATION protein_coding - CCDS48865.1 1 479.0 7.0 2.5 2.2 0.0 0.0 -4,-5 0.3483 2 12.308 MINOR ENSMUSG00000017421 Zfp207 ENSMUST00000123726 ENSMUSP00000137795 TRANSLATION nonsense_mediated_decay start - 5 342.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0343 1 -2.0 MINOR ENSMUSG00000017421 Zfp207 ENSMUST00000108216 ENSMUSP00000103851 TRANSLATION protein_coding - - 2 329.0 7.0 2.5 0.0 0.0 0.0 -4,-5 0.0303 1 12.0 MINOR ENSMUSG00000017421 Zfp207 ENSMUST00000153824 ENSMUSP00000115924 TRANSLATION protein_coding stop - 2 227.0 6.0 2.2 0.0 0.0 0.0 -4,-5 0.0087 1 -2.0 MINOR ENSMUSG00000017421 Zfp207 ENSMUST00000053740 ENSMUSP00000054168 TRANSLATION protein_coding - CCDS48863.1 1 495.0 7.0 2.5 14.4 0.0 0.0 -4,-5 0.9086 2 15.46 ALTERNATIVE:1 ENSMUSG00000017421 Zfp207 ENSMUST00000188489 ENSMUSP00000139653 TRANSLATION protein_coding - CCDS48864.1 2 464.0 7.0 2.5 16.5 0.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:4 ENSMUSG00000017421 Zfp207 ENSMUST00000178665 ENSMUSP00000136727 TRANSLATION nonsense_mediated_decay - CCDS48864.1 2 464.0 7.0 2.5 16.5 0.0 0.0 -4,-5 1.0 2 -2.0 MINOR ENSMUSG00000017421 Zfp207 ENSMUST00000017567 ENSMUSP00000017567 TRANSLATION protein_coding - CCDS48864.1 1 464.0 7.0 2.5 16.5 0.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:4 ENSMUSG00000047798 Cd300lf ENSMUST00000106561 ENSMUSP00000102171 TRANSLATION protein_coding - CCDS48980.1 1 337.0 0.0 1.764 0.0 177.2 2.0 3,-2 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000047798 Cd300lf ENSMUST00000127927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047798 Cd300lf ENSMUST00000146254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047798 Cd300lf ENSMUST00000124083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047798 Cd300lf ENSMUST00000106562 ENSMUSP00000102172 TRANSLATION protein_coding - CCDS83925.1 1 296.0 0.0 1.0 0.0 177.2 2.0 3,-2 0.2778 1 5.402 MINOR ENSMUSG00000047798 Cd300lf ENSMUST00000149335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047798 Cd300lf ENSMUST00000051264 ENSMUSP00000053983 TRANSLATION protein_coding - CCDS25619.1 1 330.0 0.0 1.5 0.0 177.2 2.0 3,-2 0.4212 1 7.1 ALTERNATIVE:2 ENSMUSG00000020901 Pik3r5 ENSMUST00000155887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020901 Pik3r5 ENSMUST00000021283 ENSMUSP00000021283 TRANSLATION protein_coding - CCDS24865.1 1 871.0 0.0 0.0 6.1 1249.1 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000020901 Pik3r5 ENSMUST00000126876 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020901 Pik3r5 ENSMUST00000141716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020901 Pik3r5 ENSMUST00000154220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057286 St6galnac2 ENSMUST00000129236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057286 St6galnac2 ENSMUST00000123236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057286 St6galnac2 ENSMUST00000145441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057286 St6galnac2 ENSMUST00000079545 ENSMUSP00000078501 TRANSLATION protein_coding - CCDS36379.1 1 373.0 10.0 7.05 4.4 229.1 0.0 0,-4 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000057286 St6galnac2 ENSMUST00000135771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037243 Zfp692 ENSMUST00000049353 ENSMUSP00000131896 TRANSLATION protein_coding - CCDS36162.1 1 531.0 20.0 3.99 0.1 39.5 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000037243 Zfp692 ENSMUST00000153510 ENSMUSP00000126674 TRANSLATION protein_coding - CCDS36162.1 5 531.0 20.0 3.99 0.1 39.5 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000020471 Pold2 ENSMUST00000136714 - NO_TRANSLATION retained_intron ENSMUSG00000020471 Pold2 ENSMUST00000134957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020471 Pold2 ENSMUST00000141907 - NO_TRANSLATION retained_intron ENSMUSG00000020471 Pold2 ENSMUST00000153995 ENSMUSP00000122906 TRANSLATION protein_coding stop - 3 241.0 0.0 3.93 0.0 0.0 0.0 -4,-2 0.0004 7 -2.0 MINOR ENSMUSG00000020471 Pold2 ENSMUST00000102922 ENSMUSP00000099986 TRANSLATION protein_coding - CCDS24407.1 1 469.0 0.0 8.2275 5.2 168.1 0.0 -4,-2 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000043692 Or3a4 ENSMUST00000059440 ENSMUSP00000056508 TRANSLATION protein_coding - CCDS25024.1 - 311.0 0.0 1.0 9.0 184.3 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043692 Or3a4 ENSMUST00000215915 ENSMUSP00000149917 TRANSLATION protein_coding - CCDS25024.1 5 311.0 0.0 1.0 9.0 184.3 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018387 Shroom1 ENSMUST00000109010 - NO_TRANSLATION retained_intron ENSMUSG00000018387 Shroom1 ENSMUST00000018531 ENSMUSP00000018531 TRANSLATION protein_coding - CCDS70182.1 1 760.0 0.0 1.1 0.0 297.1 0.0 -4,-7 0.4443 13 8.0 ALTERNATIVE:2 ENSMUSG00000018387 Shroom1 ENSMUST00000093114 ENSMUSP00000090802 TRANSLATION protein_coding - - 2 715.0 0.0 0.6 0.0 195.2 0.0 -4,-7 0.0045 14 3.27 MINOR ENSMUSG00000018387 Shroom1 ENSMUST00000155297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018387 Shroom1 ENSMUST00000109013 ENSMUSP00000104641 TRANSLATION protein_coding - CCDS24680.2 1 823.0 0.0 1.1 0.0 297.1 0.0 -4,-7 1.0 15 8.0 PRINCIPAL:2 ENSMUSG00000018387 Shroom1 ENSMUST00000146001 - NO_TRANSLATION retained_intron ENSMUSG00000085684 4930469K13Rik ENSMUST00000224226 ENSMUSP00000153619 TRANSLATION protein_coding - - - 80.0 0.0 1.8 2.1 0.0 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000085684 4930469K13Rik ENSMUST00000141450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000085684 4930469K13Rik ENSMUST00000223852 ENSMUSP00000153341 TRANSLATION protein_coding - - - 92.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0438 - 6.0 ALTERNATIVE:2 ENSMUSG00000060630 Zfp735 ENSMUST00000080407 ENSMUSP00000079269 TRANSLATION protein_coding - CCDS48845.1 1 734.0 34.0 0.5 0.0 260.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000060630 Zfp735 ENSMUST00000149560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060630 Zfp735 ENSMUST00000145996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020390 Ube2b ENSMUST00000147833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020390 Ube2b ENSMUST00000124699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020390 Ube2b ENSMUST00000109086 ENSMUSP00000104714 TRANSLATION protein_coding - CCDS24664.1 2 152.0 0.0 4.33 34.9 180.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000020390 Ube2b ENSMUST00000020657 ENSMUSP00000020657 TRANSLATION protein_coding - CCDS24664.1 1 152.0 0.0 4.33 34.9 180.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000025134 Alyref ENSMUST00000155325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025134 Alyref ENSMUST00000026125 ENSMUSP00000026125 TRANSLATION protein_coding - CCDS25744.1 1 255.0 0.0 2.29 9.0 91.6 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000025134 Alyref ENSMUST00000156685 - NO_TRANSLATION retained_intron ENSMUSG00000049721 Gal3st1 ENSMUST00000109981 ENSMUSP00000105608 TRANSLATION protein_coding - CCDS24373.1 1 423.0 0.0 1.0 4.4 603.3 0.0 -1,-4 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000049721 Gal3st1 ENSMUST00000063004 ENSMUSP00000058348 TRANSLATION protein_coding - CCDS24373.1 1 423.0 0.0 1.0 4.4 603.3 0.0 -1,-4 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000049721 Gal3st1 ENSMUST00000078757 ENSMUSP00000077815 TRANSLATION protein_coding - CCDS24373.1 1 423.0 0.0 1.0 4.4 603.3 0.0 -1,-4 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000018733 Pex12 ENSMUST00000153487 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018733 Pex12 ENSMUST00000176518 ENSMUSP00000135632 TRANSLATION protein_coding - CCDS25160.1 1 359.0 4.0 0.0 18.7 161.7 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000018733 Pex12 ENSMUST00000175741 ENSMUSP00000135145 TRANSLATION protein_coding - CCDS25160.1 1 359.0 4.0 0.0 18.7 161.7 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000018733 Pex12 ENSMUST00000136369 ENSMUSP00000118829 TRANSLATION protein_coding stop - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018733 Pex12 ENSMUST00000018877 ENSMUSP00000018877 TRANSLATION protein_coding - CCDS25160.1 1 359.0 4.0 0.0 18.7 161.7 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000018733 Pex12 ENSMUST00000176374 ENSMUSP00000134965 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018733 Pex12 ENSMUST00000108146 ENSMUSP00000103781 TRANSLATION protein_coding - CCDS25160.1 1 359.0 4.0 0.0 18.7 161.7 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000040712 Camta2 ENSMUST00000108544 ENSMUSP00000104184 TRANSLATION protein_coding - CCDS56788.1 1 1203.0 0.0 1.825 5.8 177.8 0.0 -4,-5 1.0 9 10.0 PRINCIPAL:4 ENSMUSG00000040712 Camta2 ENSMUST00000150224 - NO_TRANSLATION retained_intron ENSMUSG00000040712 Camta2 ENSMUST00000036299 ENSMUSP00000043792 TRANSLATION protein_coding - CCDS24963.1 1 1208.0 0.0 1.825 5.8 168.9 0.0 -4,-5 0.8921 9 9.666 ALTERNATIVE:1 ENSMUSG00000040712 Camta2 ENSMUST00000100933 ENSMUSP00000098493 TRANSLATION protein_coding - - 5 1198.0 0.0 1.825 2.1 177.8 0.0 -4,-6 0.4812 9 8.458 MINOR ENSMUSG00000040712 Camta2 ENSMUST00000119120 ENSMUSP00000113847 TRANSLATION protein_coding - CCDS56787.1 1 1196.0 0.0 1.825 5.2 177.8 0.0 -4,-5 0.9327 9 9.75 ALTERNATIVE:1 ENSMUSG00000040712 Camta2 ENSMUST00000108545 ENSMUSP00000104185 TRANSLATION protein_coding - CCDS56786.1 1 1172.0 0.0 1.825 3.4 114.8 0.0 -4,-5 0.5689 9 8.0 MINOR ENSMUSG00000040712 Camta2 ENSMUST00000120261 ENSMUSP00000113667 TRANSLATION protein_coding - - 5 1179.0 0.0 1.825 3.4 114.8 0.0 -4,-5 0.4614 9 8.0 MINOR ENSMUSG00000040712 Camta2 ENSMUST00000145823 ENSMUSP00000123602 TRANSLATION nonsense_mediated_decay - - 1 181.0 0.0 0.0 0.0 86.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040712 Camta2 ENSMUST00000125687 - NO_TRANSLATION retained_intron ENSMUSG00000042709 Atpaf2 ENSMUST00000154387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042709 Atpaf2 ENSMUST00000156966 - NO_TRANSLATION retained_intron ENSMUSG00000042709 Atpaf2 ENSMUST00000141987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042709 Atpaf2 ENSMUST00000145532 ENSMUSP00000135761 TRANSLATION nonsense_mediated_decay - - 5 145.0 0.0 2.5 0.0 101.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000042709 Atpaf2 ENSMUST00000138696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042709 Atpaf2 ENSMUST00000108721 ENSMUSP00000104361 TRANSLATION protein_coding - - 1 289.0 0.0 6.25 7.1 133.8 0.0 -4,-2 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000014195 Dnajc7 ENSMUST00000239499 ENSMUSP00000159331 TRANSLATION nonsense_mediated_decay - - - 115.0 0.0 2.75 0.0 30.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000239426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014195 Dnajc7 ENSMUST00000239482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014195 Dnajc7 ENSMUST00000239490 ENSMUSP00000159332 TRANSLATION protein_coding - - - 484.0 0.0 11.96 0.0 179.5 0.0 -4,-6 0.0495 18 11.1 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000132886 ENSMUSP00000159289 TRANSLATION protein_coding - - 2 156.0 0.0 4.18 0.0 30.9 0.0 -4,-5 0.0 6 0.0 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000239494 ENSMUSP00000159285 TRANSLATION nonsense_mediated_decay start - - 104.0 0.0 2.33 0.0 44.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000146840 ENSMUSP00000115438 TRANSLATION protein_coding - - 5 478.0 0.0 11.908 4.9 179.5 0.0 -4,-7 0.2685 18 11.89 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000239389 ENSMUSP00000159319 TRANSLATION protein_coding - - - 438.0 0.0 10.71 6.6 148.6 0.0 -4,-2 0.1865 14 8.024 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000154972 ENSMUSP00000159367 TRANSLATION protein_coding - - 3 159.0 0.0 4.33 0.0 30.9 0.0 -4,-5 0.0 6 0.0 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000155152 ENSMUSP00000116793 TRANSLATION protein_coding stop - 5 268.0 0.0 6.86 0.0 69.0 0.0 -4,-5 0.0 15 -2.0 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000239410 ENSMUSP00000159311 TRANSLATION protein_coding - - - 579.0 0.0 12.41 0.1 175.6 0.0 -4,-7 0.0617 18 11.766 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000128414 - NO_TRANSLATION retained_intron ENSMUSG00000014195 Dnajc7 ENSMUST00000137688 ENSMUSP00000159334 TRANSLATION protein_coding start/stop - 5 315.0 0.0 8.11 0.0 69.0 0.0 -4,-5 0.0007 15 -2.0 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000129346 - NO_TRANSLATION retained_intron ENSMUSG00000014195 Dnajc7 ENSMUST00000239479 ENSMUSP00000159325 TRANSLATION protein_coding - - - 115.0 0.0 2.75 0.0 30.9 0.0 -4,-5 0.0 6 0.0 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000014339 ENSMUSP00000014339 TRANSLATION protein_coding - CCDS25428.1 1 494.0 0.0 12.16 18.5 179.5 0.0 -4,-5 1.0 18 15.502 PRINCIPAL:1 ENSMUSG00000014195 Dnajc7 ENSMUST00000136199 - NO_TRANSLATION retained_intron ENSMUSG00000014195 Dnajc7 ENSMUST00000239418 ENSMUSP00000159323 TRANSLATION nonsense_mediated_decay - - - 347.0 0.0 9.11 0.0 83.5 0.0 -4,-5 0.0006 15 -2.0 MINOR ENSMUSG00000014195 Dnajc7 ENSMUST00000239453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014195 Dnajc7 ENSMUST00000239491 - NO_TRANSLATION retained_intron ENSMUSG00000014195 Dnajc7 ENSMUST00000148098 - NO_TRANSLATION retained_intron ENSMUSG00000014195 Dnajc7 ENSMUST00000239391 - NO_TRANSLATION retained_intron ENSMUSG00000050860 Phospho1 ENSMUST00000054173 ENSMUSP00000057858 TRANSLATION protein_coding - CCDS36288.1 2 267.0 7.0 2.75 16.8 334.1 0.0 -4,-1 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000050860 Phospho1 ENSMUST00000150134 ENSMUSP00000117244 TRANSLATION protein_coding stop - 2 47.0 4.0 1.0 0.0 44.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000050860 Phospho1 ENSMUST00000176538 ENSMUSP00000135721 TRANSLATION protein_coding start - 3 191.0 3.0 1.0 0.0 240.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000078668 Gm11595 ENSMUST00000107440 ENSMUSP00000103064 TRANSLATION protein_coding - CCDS48915.1 - 289.0 0.0 0.0 0.0 170.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000070382 Or1e31 ENSMUST00000214485 ENSMUSP00000151029 TRANSLATION protein_coding - CCDS83838.1 2 312.0 0.0 1.0 9.4 183.3 0.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020684 Rasl10b ENSMUST00000175848 ENSMUSP00000135803 TRANSLATION protein_coding - - 1 146.0 13.0 2.32 0.0 42.4 0.0 -4,-1 0.0 - 11.7 MINOR ENSMUSG00000020684 Rasl10b ENSMUST00000164425 ENSMUSP00000132696 TRANSLATION protein_coding - CCDS25163.1 1 203.0 16.0 3.0 25.2 83.2 0.0 -4,-1 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000020684 Rasl10b ENSMUST00000108140 ENSMUSP00000103775 TRANSLATION protein_coding - CCDS25163.1 2 203.0 16.0 3.0 25.2 83.2 0.0 -4,-1 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000020684 Rasl10b ENSMUST00000021022 ENSMUSP00000021022 TRANSLATION protein_coding - CCDS25163.1 1 203.0 16.0 3.0 25.2 83.2 0.0 -4,-1 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000069830 Nlrp1a ENSMUST00000048514 ENSMUSP00000038186 TRANSLATION protein_coding - - 1 1300.0 6.0 9.632 0.0 554.8 0.0 -4,-5 0.8329 1 14.0 PRINCIPAL:4 ENSMUSG00000069830 Nlrp1a ENSMUST00000108518 ENSMUSP00000104158 TRANSLATION protein_coding - CCDS48838.1 5 1182.0 6.0 9.5 0.0 557.1 0.0 -4,-5 0.6136 1 13.736 ALTERNATIVE:2 ENSMUSG00000004044 Cavin1 ENSMUST00000060792 ENSMUSP00000058321 TRANSLATION protein_coding - CCDS25442.1 1 392.0 0.0 1.0 8.7 330.2 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000004044 Cavin1 ENSMUST00000132934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056328 Myh1 ENSMUST00000018637 ENSMUSP00000018637 TRANSLATION protein_coding - CCDS24855.1 5 1942.0 16.0 36.93 24.9 1549.6 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000056328 Myh1 ENSMUST00000124516 ENSMUSP00000117569 TRANSLATION protein_coding - CCDS24855.1 1 1942.0 16.0 36.93 24.9 1549.6 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000056328 Myh1 ENSMUST00000129018 ENSMUSP00000115583 TRANSLATION protein_coding stop - 1 95.0 0.0 1.75 0.0 51.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000056328 Myh1 ENSMUST00000075734 ENSMUSP00000075147 TRANSLATION protein_coding - CCDS24855.1 1 1942.0 16.0 36.93 24.9 1549.6 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000018537 Pcgf2 ENSMUST00000103149 ENSMUSP00000099438 TRANSLATION protein_coding - - 5 158.0 0.0 0.948 0.0 38.0 0.0 -4,-5 0.0 - 1.188 MINOR ENSMUSG00000018537 Pcgf2 ENSMUST00000018681 ENSMUSP00000018681 TRANSLATION protein_coding - CCDS25327.1 1 342.0 8.0 4.7355 10.2 118.2 0.0 -4,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000018537 Pcgf2 ENSMUST00000169807 ENSMUSP00000126967 TRANSLATION protein_coding - CCDS25327.1 1 342.0 8.0 4.7355 10.2 118.2 0.0 -4,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000018537 Pcgf2 ENSMUST00000126185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018537 Pcgf2 ENSMUST00000134003 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018537 Pcgf2 ENSMUST00000179765 ENSMUSP00000137517 TRANSLATION protein_coding - CCDS25327.1 1 342.0 8.0 4.7355 10.2 118.2 0.0 -4,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000018537 Pcgf2 ENSMUST00000103148 ENSMUSP00000099437 TRANSLATION protein_coding - CCDS25327.1 5 342.0 8.0 4.7355 10.2 118.2 0.0 -4,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000078920 Ifi47 ENSMUST00000109202 ENSMUSP00000104825 TRANSLATION protein_coding - CCDS24595.1 2 420.0 14.0 1.4 0.8 582.7 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000078920 Ifi47 ENSMUST00000046704 ENSMUSP00000041975 TRANSLATION protein_coding - CCDS24595.1 1 420.0 14.0 1.4 0.8 582.7 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000078920 Ifi47 ENSMUST00000213728 ENSMUSP00000150940 TRANSLATION protein_coding - CCDS24595.1 5 420.0 14.0 1.4 0.8 582.7 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000078920 Ifi47 ENSMUST00000152914 ENSMUSP00000150066 TRANSLATION protein_coding stop - 5 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078920 Ifi47 ENSMUST00000214804 ENSMUSP00000149108 TRANSLATION protein_coding stop - 3 197.0 12.0 0.8 0.0 274.7 0.0 -4,-5 0.0013 6 -2.0 MINOR ENSMUSG00000002699 Lcp2 ENSMUST00000052413 ENSMUSP00000056621 TRANSLATION protein_coding - CCDS48768.1 1 533.0 0.0 5.31 8.0 90.8 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000002699 Lcp2 ENSMUST00000109329 ENSMUSP00000104952 TRANSLATION protein_coding - - 1 523.0 0.0 4.51 0.0 87.6 0.0 -4,-5 0.0207 9 10.188 MINOR ENSMUSG00000002699 Lcp2 ENSMUST00000133120 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002699 Lcp2 ENSMUST00000146318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048834 Vstm2a ENSMUST00000207256 ENSMUSP00000147108 TRANSLATION protein_coding start - 1 26.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048834 Vstm2a ENSMUST00000208926 ENSMUSP00000146349 TRANSLATION protein_coding start - 5 234.0 0.0 0.61 0.0 38.6 0.0 -4,-6 0.1119 2 -2.0 MINOR ENSMUSG00000048834 Vstm2a ENSMUST00000208440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048834 Vstm2a ENSMUST00000109647 ENSMUSP00000105274 TRANSLATION protein_coding - - 1 282.0 0.0 0.61 0.0 38.6 0.0 0,-4 0.0845 2 12.0 MINOR ENSMUSG00000048834 Vstm2a ENSMUST00000109645 ENSMUSP00000105272 TRANSLATION protein_coding - CCDS24441.2 1 236.0 0.0 0.61 19.4 38.6 0.0 0,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000032673 Prorsd1 ENSMUST00000133103 ENSMUSP00000117933 TRANSLATION protein_coding - CCDS48762.1 1 62.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0814 - 2.574 MINOR ENSMUSG00000032673 Prorsd1 ENSMUST00000039900 ENSMUSP00000048099 TRANSLATION protein_coding - CCDS24495.1 1 169.0 0.0 1.75 21.9 0.0 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000048919 Or2aa1 ENSMUST00000215626 ENSMUSP00000149991 TRANSLATION protein_coding - CCDS24773.1 5 319.0 0.0 1.0 0.4 171.1 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048919 Or2aa1 ENSMUST00000061293 ENSMUSP00000054824 TRANSLATION protein_coding - CCDS24773.1 - 319.0 0.0 1.0 0.4 171.1 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020522 Mfap3 ENSMUST00000108848 ENSMUSP00000104476 TRANSLATION protein_coding stop - 3 110.0 0.0 0.365 0.0 0.0 0.0 4,-1 0.0039 - -2.0 MINOR ENSMUSG00000020522 Mfap3 ENSMUST00000020830 ENSMUSP00000020830 TRANSLATION protein_coding - CCDS24718.1 1 349.0 0.0 0.6 0.1 30.5 1.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000020522 Mfap3 ENSMUST00000108849 ENSMUSP00000104477 TRANSLATION protein_coding - CCDS24718.1 1 349.0 0.0 0.6 0.1 30.5 1.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000020522 Mfap3 ENSMUST00000128971 - NO_TRANSLATION retained_intron ENSMUSG00000052642 Lypd9 ENSMUST00000064614 ENSMUSP00000063665 TRANSLATION protein_coding - CCDS24731.1 1 145.0 0.0 2.0 1.1 20.7 0.0 0,-3 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000048013 Krt35 ENSMUST00000173988 - NO_TRANSLATION retained_intron ENSMUSG00000048013 Krt35 ENSMUST00000103127 ENSMUSP00000099416 TRANSLATION protein_coding - CCDS25407.2 1 455.0 0.0 4.11 11.8 366.7 0.0 -4,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000051650 B3gnt2 ENSMUST00000062844 ENSMUSP00000060247 TRANSLATION protein_coding - CCDS24471.1 1 397.0 0.0 1.8 36.9 140.4 1.0 -3,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000051650 B3gnt2 ENSMUST00000055549 ENSMUSP00000053528 TRANSLATION protein_coding - CCDS24471.1 1 397.0 0.0 1.8 36.9 140.4 1.0 -3,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000051650 B3gnt2 ENSMUST00000173660 ENSMUSP00000133306 TRANSLATION protein_coding stop - 3 201.0 0.0 0.8 0.0 0.0 1.0 -3,-5 0.0015 1 -2.0 MINOR ENSMUSG00000051650 B3gnt2 ENSMUST00000189990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060765 Or2t46 ENSMUST00000169428 ENSMUSP00000131257 TRANSLATION protein_coding - CCDS48806.1 - 326.0 0.0 1.0 1.1 156.9 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060765 Or2t46 ENSMUST00000203418 ENSMUSP00000145386 TRANSLATION protein_coding - CCDS48806.1 3 326.0 0.0 1.0 1.1 156.9 7.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000020698 Cct6b ENSMUST00000021040 ENSMUSP00000021040 TRANSLATION protein_coding - CCDS25145.1 1 531.0 23.0 13.0 33.9 531.9 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000020698 Cct6b ENSMUST00000100722 ENSMUSP00000098288 TRANSLATION protein_coding - CCDS70265.1 1 492.0 19.0 12.264 0.0 501.9 0.0 -4,-5 0.031 5 12.066 MINOR ENSMUSG00000017195 Zpbp2 ENSMUST00000107513 ENSMUSP00000103137 TRANSLATION protein_coding - - 5 304.0 0.0 6.0 0.0 298.4 0.0 1,-3 0.1109 6 10.8 MINOR ENSMUSG00000017195 Zpbp2 ENSMUST00000017339 ENSMUSP00000017339 TRANSLATION protein_coding - CCDS25353.1 1 326.0 0.0 6.6 8.9 298.4 0.0 4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000017195 Zpbp2 ENSMUST00000107509 ENSMUSP00000103133 TRANSLATION protein_coding - CCDS48903.1 1 272.0 0.0 5.5 6.5 298.4 0.0 -4,-5 0.7414 5 11.886 MINOR ENSMUSG00000017195 Zpbp2 ENSMUST00000081033 ENSMUSP00000079822 TRANSLATION protein_coding - CCDS25354.1 1 253.0 0.0 5.6 2.9 211.9 0.0 4,-1 0.098 4 5.535 MINOR ENSMUSG00000017195 Zpbp2 ENSMUST00000126236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017195 Zpbp2 ENSMUST00000107511 ENSMUSP00000103135 TRANSLATION protein_coding - CCDS48903.1 1 272.0 0.0 5.5 6.5 298.4 0.0 -4,-5 0.7414 5 11.886 MINOR ENSMUSG00000095095 Or1e26 ENSMUST00000071553 ENSMUSP00000071484 TRANSLATION protein_coding - CCDS25013.1 - 312.0 0.0 1.0 11.5 185.0 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095095 Or1e26 ENSMUST00000215689 ENSMUSP00000149293 TRANSLATION protein_coding - CCDS25013.1 5 312.0 0.0 1.0 11.5 185.0 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020523 Fam114a2 ENSMUST00000130596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020523 Fam114a2 ENSMUST00000129596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020523 Fam114a2 ENSMUST00000020831 ENSMUSP00000020831 TRANSLATION protein_coding - CCDS24717.1 1 490.0 0.0 -0.47 0.3 226.7 0.0 -4,-5 1.0 17 0.0 PRINCIPAL:2 ENSMUSG00000020523 Fam114a2 ENSMUST00000108850 ENSMUSP00000104478 TRANSLATION protein_coding - CCDS48801.1 1 497.0 0.0 -0.47 0.3 226.7 0.0 -4,-5 0.5287 15 0.0 ALTERNATIVE:2 ENSMUSG00000005917 Otx1 ENSMUST00000172395 - NO_TRANSLATION retained_intron ENSMUSG00000005917 Otx1 ENSMUST00000147486 ENSMUSP00000134704 TRANSLATION protein_coding stop - 5 150.0 0.0 1.5 0.0 78.8 0.0 -4,-6 0.0255 - -2.0 MINOR ENSMUSG00000005917 Otx1 ENSMUST00000006071 ENSMUSP00000006071 TRANSLATION protein_coding - CCDS24468.1 1 355.0 0.0 1.5 9.9 202.4 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018286 Psmb6 ENSMUST00000018430 ENSMUSP00000018430 TRANSLATION protein_coding - CCDS48836.1 1 238.0 0.0 5.15 7.9 157.2 0.0 -4,-2 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000018286 Psmb6 ENSMUST00000145503 - NO_TRANSLATION retained_intron ENSMUSG00000018286 Psmb6 ENSMUST00000128870 - NO_TRANSLATION retained_intron ENSMUSG00000018286 Psmb6 ENSMUST00000148535 - NO_TRANSLATION retained_intron ENSMUSG00000001506 Col1a1 ENSMUST00000139974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001506 Col1a1 ENSMUST00000001547 ENSMUSP00000001547 TRANSLATION protein_coding - CCDS25265.1 1 1453.0 0.0 33.55 14.5 666.2 0.0 4,-1 1.0 46 16.0 PRINCIPAL:1 ENSMUSG00000001506 Col1a1 ENSMUST00000148593 - NO_TRANSLATION retained_intron ENSMUSG00000001506 Col1a1 ENSMUST00000148046 - NO_TRANSLATION retained_intron ENSMUSG00000020486 Septin4 ENSMUST00000123081 - NO_TRANSLATION retained_intron ENSMUSG00000020486 Septin4 ENSMUST00000127414 - NO_TRANSLATION retained_intron ENSMUSG00000020486 Septin4 ENSMUST00000132723 - NO_TRANSLATION retained_intron ENSMUSG00000020486 Septin4 ENSMUST00000133638 - NO_TRANSLATION retained_intron ENSMUSG00000020486 Septin4 ENSMUST00000133202 ENSMUSP00000115790 TRANSLATION protein_coding stop - 5 280.0 9.0 4.5 0.0 236.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000020486 Septin4 ENSMUST00000107961 ENSMUSP00000103595 TRANSLATION protein_coding stop - 3 232.0 16.0 6.0 0.0 291.5 0.0 -4,-5 0.0013 7 -2.0 MINOR ENSMUSG00000020486 Septin4 ENSMUST00000148216 - NO_TRANSLATION retained_intron ENSMUSG00000020486 Septin4 ENSMUST00000107960 ENSMUSP00000103594 TRANSLATION protein_coding - CCDS70276.1 1 431.0 16.0 8.0 0.4 428.9 0.0 -4,-5 0.0323 13 10.338 MINOR ENSMUSG00000020486 Septin4 ENSMUST00000122067 ENSMUSP00000112960 TRANSLATION protein_coding - CCDS70275.1 1 313.0 16.0 8.0 0.0 428.9 0.0 -4,-5 0.029 10 10.338 MINOR ENSMUSG00000020486 Septin4 ENSMUST00000107962 ENSMUSP00000103596 TRANSLATION protein_coding - - 5 459.0 16.0 8.83 7.7 428.9 0.0 -4,-5 0.8556 14 14.715 MINOR ENSMUSG00000020486 Septin4 ENSMUST00000136229 - NO_TRANSLATION retained_intron ENSMUSG00000020486 Septin4 ENSMUST00000060360 ENSMUSP00000053087 TRANSLATION protein_coding - - 5 536.0 0.0 0.0 0.0 539.5 0.0 -4,-7 0.0156 2 0.0 MINOR ENSMUSG00000020486 Septin4 ENSMUST00000143950 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020486 Septin4 ENSMUST00000135175 - NO_TRANSLATION retained_intron ENSMUSG00000020486 Septin4 ENSMUST00000018544 ENSMUSP00000018544 TRANSLATION protein_coding - CCDS25213.1 1 478.0 16.0 8.83 8.4 428.9 0.0 -4,-5 1.0 14 15.0 MINOR ENSMUSG00000020486 Septin4 ENSMUST00000140398 - NO_TRANSLATION retained_intron ENSMUSG00000020486 Septin4 ENSMUST00000122945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020486 Septin4 ENSMUST00000134923 - NO_TRANSLATION retained_intron ENSMUSG00000020486 Septin4 ENSMUST00000239011 ENSMUSP00000158869 TRANSLATION protein_coding - - - 971.0 16.0 8.83 0.0 968.4 0.0 -4,-7 0.8688 16 18.0 PRINCIPAL:1 ENSMUSG00000020486 Septin4 ENSMUST00000063156 ENSMUSP00000060127 TRANSLATION protein_coding - CCDS70277.1 1 379.0 16.0 8.83 6.8 428.9 0.0 -4,-5 0.8965 11 14.352 MINOR ENSMUSG00000017119 Nbr1 ENSMUST00000103098 ENSMUSP00000099387 TRANSLATION protein_coding - CCDS25475.1 1 988.0 8.0 6.55 0.1 176.7 0.0 -4,-5 0.5334 7 14.0 ALTERNATIVE:2 ENSMUSG00000017119 Nbr1 ENSMUST00000107218 ENSMUSP00000102836 TRANSLATION protein_coding - CCDS25475.1 5 988.0 8.0 6.55 0.1 176.7 0.0 -4,-5 0.5334 7 14.0 ALTERNATIVE:2 ENSMUSG00000017119 Nbr1 ENSMUST00000141170 - NO_TRANSLATION retained_intron ENSMUSG00000017119 Nbr1 ENSMUST00000144517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017119 Nbr1 ENSMUST00000146452 - NO_TRANSLATION retained_intron ENSMUSG00000017119 Nbr1 ENSMUST00000149170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017119 Nbr1 ENSMUST00000123558 ENSMUSP00000133619 TRANSLATION nonsense_mediated_decay - - 1 888.0 8.0 5.22 0.0 176.7 0.0 -4,-5 0.0437 6 -2.0 MINOR ENSMUSG00000017119 Nbr1 ENSMUST00000107208 ENSMUSP00000102826 TRANSLATION protein_coding - CCDS56810.1 1 906.0 8.0 5.22 0.1 176.7 0.0 -4,-5 0.1626 6 11.342 MINOR ENSMUSG00000017119 Nbr1 ENSMUST00000147239 ENSMUSP00000122097 TRANSLATION protein_coding stop - 5 43.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017119 Nbr1 ENSMUST00000127871 - NO_TRANSLATION retained_intron ENSMUSG00000017119 Nbr1 ENSMUST00000107212 ENSMUSP00000102830 TRANSLATION protein_coding - - 5 963.0 8.0 6.55 3.3 176.7 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:2 ENSMUSG00000017119 Nbr1 ENSMUST00000107213 ENSMUSP00000102831 TRANSLATION protein_coding - CCDS56811.1 1 951.0 8.0 6.55 0.1 176.7 0.0 -4,-5 0.5244 7 14.0 ALTERNATIVE:2 ENSMUSG00000017119 Nbr1 ENSMUST00000071537 ENSMUSP00000071467 TRANSLATION protein_coding - - 5 988.0 8.0 6.22 0.1 161.8 0.0 -4,-5 0.1077 7 13.34 MINOR ENSMUSG00000017119 Nbr1 ENSMUST00000103099 ENSMUSP00000099388 TRANSLATION protein_coding - CCDS25475.1 1 988.0 8.0 6.55 0.1 176.7 0.0 -4,-5 0.5334 7 14.0 ALTERNATIVE:2 ENSMUSG00000017119 Nbr1 ENSMUST00000136185 ENSMUSP00000134500 TRANSLATION nonsense_mediated_decay - - 3 41.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017119 Nbr1 ENSMUST00020183200 - NO_TRANSLATION misc_RNA ENSMUSG00000017119 Nbr1 ENSMUST00000174013 - NO_TRANSLATION retained_intron ENSMUSG00000017119 Nbr1 ENSMUST00000149019 ENSMUSP00000119900 TRANSLATION protein_coding start - 1 712.0 2.0 3.33 0.0 106.1 0.0 -4,-5 0.001 5 -2.0 MINOR ENSMUSG00000017119 Nbr1 ENSMUST00000172744 - NO_TRANSLATION retained_intron ENSMUSG00000017119 Nbr1 ENSMUST00000127421 ENSMUSP00000121628 TRANSLATION protein_coding stop - 3 43.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017119 Nbr1 ENSMUST00000148805 - NO_TRANSLATION retained_intron ENSMUSG00000049755 Zfp672 ENSMUST00000057836 ENSMUSP00000060088 TRANSLATION protein_coding - CCDS24727.1 1 468.0 48.0 2.6 0.4 209.7 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000049755 Zfp672 ENSMUST00000155662 ENSMUSP00000114561 TRANSLATION protein_coding stop - 2 55.0 6.0 0.8 0.0 20.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000049755 Zfp672 ENSMUST00000108829 ENSMUSP00000104457 TRANSLATION protein_coding - CCDS24727.1 1 468.0 48.0 2.6 0.4 209.7 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000049755 Zfp672 ENSMUST00000186859 ENSMUSP00000140236 TRANSLATION protein_coding stop - 2 89.0 11.0 1.8 0.0 36.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000049755 Zfp672 ENSMUST00000135097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049755 Zfp672 ENSMUST00000130217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049755 Zfp672 ENSMUST00000065533 ENSMUSP00000070680 TRANSLATION protein_coding - - - 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000049755 Zfp672 ENSMUST00000185661 - NO_TRANSLATION retained_intron ENSMUSG00000049755 Zfp672 ENSMUST00000064786 ENSMUSP00000070567 TRANSLATION protein_coding - CCDS24727.1 1 468.0 48.0 2.6 0.4 209.7 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000020415 Pttg1 ENSMUST00000118368 ENSMUSP00000112834 TRANSLATION protein_coding - CCDS48771.1 5 199.0 0.0 1.2 12.5 129.1 0.0 -4,-5 1.0 1 14.904 PRINCIPAL:1 ENSMUSG00000020415 Pttg1 ENSMUST00000121638 ENSMUSP00000112815 TRANSLATION protein_coding - CCDS48771.1 1 199.0 0.0 1.2 12.5 129.1 0.0 -4,-5 1.0 1 14.904 PRINCIPAL:1 ENSMUSG00000020415 Pttg1 ENSMUST00000152115 ENSMUSP00000119554 TRANSLATION nonsense_mediated_decay - - 1 122.0 0.0 0.2 0.0 74.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020415 Pttg1 ENSMUST00000117446 ENSMUSP00000112841 TRANSLATION protein_coding - CCDS24556.1 1 188.0 0.0 1.2 0.0 130.7 0.0 -4,-5 0.1889 1 12.0 MINOR ENSMUSG00000020415 Pttg1 ENSMUST00000020685 ENSMUSP00000020685 TRANSLATION protein_coding - CCDS24556.1 2 188.0 0.0 1.2 0.0 130.7 0.0 -4,-5 0.1889 1 12.0 MINOR ENSMUSG00000020415 Pttg1 ENSMUST00000140434 ENSMUSP00000122019 TRANSLATION protein_coding start - 5 99.0 0.0 1.2 0.0 74.9 0.0 -4,-5 0.0164 - -2.0 MINOR ENSMUSG00000020415 Pttg1 ENSMUST00000101340 ENSMUSP00000098894 TRANSLATION protein_coding - CCDS48771.1 5 199.0 0.0 1.2 12.5 129.1 0.0 -4,-5 1.0 1 14.904 PRINCIPAL:1 ENSMUSG00000020415 Pttg1 ENSMUST00000148130 - NO_TRANSLATION retained_intron ENSMUSG00000020415 Pttg1 ENSMUST00000150726 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020415 Pttg1 ENSMUST00000020687 ENSMUSP00000020687 TRANSLATION protein_coding - CCDS48771.1 1 199.0 0.0 1.2 12.5 129.1 0.0 -4,-5 1.0 1 14.904 PRINCIPAL:1 ENSMUSG00000070407 Hs3st3b1 ENSMUST00000094103 ENSMUSP00000091647 TRANSLATION protein_coding - CCDS24838.1 1 390.0 21.0 1.5 9.9 154.7 0.0 -4,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000020770 Unk ENSMUST00000175702 - NO_TRANSLATION retained_intron ENSMUSG00000020770 Unk ENSMUST00000140683 - NO_TRANSLATION retained_intron ENSMUSG00000020770 Unk ENSMUST00000106452 ENSMUSP00000102060 TRANSLATION protein_coding - CCDS70351.1 1 797.0 23.0 4.95 0.0 21.7 0.0 -3,-1 0.3508 14 14.0 ALTERNATIVE:2 ENSMUSG00000020770 Unk ENSMUST00000150759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020770 Unk ENSMUST00000021116 ENSMUSP00000021116 TRANSLATION protein_coding - CCDS25655.1 1 810.0 23.0 4.95 2.1 21.7 0.0 -3,-1 1.0 14 15.0 PRINCIPAL:2 ENSMUSG00000020770 Unk ENSMUST00000176212 - NO_TRANSLATION retained_intron ENSMUSG00000020770 Unk ENSMUST00000176788 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040283 Btnl9 ENSMUST00000131363 - NO_TRANSLATION retained_intron ENSMUSG00000040283 Btnl9 ENSMUST00000066531 ENSMUSP00000066598 TRANSLATION protein_coding - - 1 621.0 0.0 3.228 0.0 133.2 2.0 -2,-5 0.0197 12 9.552 MINOR ENSMUSG00000040283 Btnl9 ENSMUST00000153999 ENSMUSP00000120530 TRANSLATION protein_coding stop - 5 205.0 0.0 1.3 0.0 44.2 2.0 -2,-5 0.0031 5 -2.0 MINOR ENSMUSG00000040283 Btnl9 ENSMUST00000046522 ENSMUSP00000046229 TRANSLATION protein_coding - CCDS24600.1 1 536.0 0.0 3.888 0.0 152.0 2.0 -2,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000040283 Btnl9 ENSMUST00000128462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025372 Baiap2 ENSMUST00000103021 ENSMUSP00000099310 TRANSLATION protein_coding - CCDS25723.1 1 482.0 0.0 8.05 2.6 366.3 0.0 -4,-5 0.4183 24 8.462 MINOR ENSMUSG00000025372 Baiap2 ENSMUST00000106231 ENSMUSP00000101838 TRANSLATION protein_coding - - 1 513.0 0.0 8.05 0.0 366.3 0.0 -4,-5 0.0405 25 8.0 MINOR ENSMUSG00000025372 Baiap2 ENSMUST00000106233 ENSMUSP00000101840 TRANSLATION protein_coding - - 5 521.0 0.0 8.05 9.8 366.3 0.0 -4,-5 0.7755 26 10.538 PRINCIPAL:3 ENSMUSG00000025372 Baiap2 ENSMUST00000152523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025372 Baiap2 ENSMUST00000131580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025372 Baiap2 ENSMUST00000146960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025372 Baiap2 ENSMUST00000146566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025372 Baiap2 ENSMUST00000075180 ENSMUSP00000074674 TRANSLATION protein_coding - CCDS25724.1 1 522.0 0.0 8.05 10.5 366.3 0.0 -4,-5 0.9694 25 10.739 ALTERNATIVE:1 ENSMUSG00000025372 Baiap2 ENSMUST00000026436 ENSMUSP00000026436 TRANSLATION protein_coding - CCDS25722.1 1 535.0 0.0 8.05 11.4 366.3 0.0 -4,-5 1.0 25 11.0 ALTERNATIVE:1 ENSMUSG00000020340 Cyfip2 ENSMUST00000142017 ENSMUSP00000119801 TRANSLATION protein_coding start - 5 948.0 0.0 16.23 0.0 1294.7 0.0 -4,-5 0.0633 25 -2.0 MINOR ENSMUSG00000020340 Cyfip2 ENSMUST00000093166 ENSMUSP00000090854 TRANSLATION protein_coding - CCDS24573.1 1 1253.0 0.0 22.73 34.6 1356.3 0.0 -4,-5 1.0 26 16.0 PRINCIPAL:1 ENSMUSG00000020340 Cyfip2 ENSMUST00000165599 ENSMUSP00000127586 TRANSLATION protein_coding - CCDS24573.1 1 1253.0 0.0 22.73 34.6 1356.3 0.0 -4,-5 1.0 26 16.0 PRINCIPAL:1 ENSMUSG00000020340 Cyfip2 ENSMUST00000093165 ENSMUSP00000090853 TRANSLATION protein_coding - CCDS24573.1 1 1253.0 0.0 22.73 34.6 1356.3 0.0 -4,-5 1.0 26 16.0 PRINCIPAL:1 ENSMUSG00000020340 Cyfip2 ENSMUST00000129474 ENSMUSP00000116715 TRANSLATION protein_coding stop - 2 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0068 - -2.0 MINOR ENSMUSG00000035208 Slfn8 ENSMUST00000130822 ENSMUSP00000114417 TRANSLATION protein_coding stop - 5 641.0 9.0 1.33 0.0 56.1 0.0 -4,-5 0.0987 2 -2.0 MINOR ENSMUSG00000035208 Slfn8 ENSMUST00000215239 ENSMUSP00000149800 TRANSLATION protein_coding - CCDS48869.1 5 407.0 0.0 1.33 0.0 57.2 0.0 -4,-5 0.3778 2 12.0 MINOR ENSMUSG00000035208 Slfn8 ENSMUST00000108152 ENSMUSP00000103787 TRANSLATION protein_coding - CCDS48869.1 1 407.0 0.0 1.33 0.0 57.2 0.0 -4,-5 0.3778 2 12.0 MINOR ENSMUSG00000035208 Slfn8 ENSMUST00000038141 ENSMUSP00000040060 TRANSLATION protein_coding - CCDS25155.1 1 910.0 12.0 1.33 0.0 56.1 0.0 -4,-5 1.0 2 17.886 PRINCIPAL:1 ENSMUSG00000035208 Slfn8 ENSMUST00000131883 ENSMUSP00000121831 TRANSLATION protein_coding start/stop - 5 417.0 9.0 1.0 0.0 57.2 0.0 -4,-5 0.0371 - -2.0 MINOR ENSMUSG00000035208 Slfn8 ENSMUST00000092838 ENSMUSP00000090513 TRANSLATION protein_coding - CCDS25155.1 5 910.0 12.0 1.33 0.0 56.1 0.0 -4,-5 1.0 2 17.886 PRINCIPAL:1 ENSMUSG00000049506 Sppl2c ENSMUST00000107000 ENSMUSP00000102613 TRANSLATION protein_coding - CCDS36352.1 - 690.0 0.0 0.0 0.0 245.5 8.0 4,-1 0.4129 1 2.0 ALTERNATIVE:2 ENSMUSG00000049506 Sppl2c ENSMUST00000059448 ENSMUSP00000091453 TRANSLATION protein_coding - CCDS36351.1 1 581.0 0.0 0.0 0.0 245.5 8.0 4,-1 1.0 1 2.0 PRINCIPAL:2 ENSMUSG00000025384 Faap100 ENSMUST00000134771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025384 Faap100 ENSMUST00000153015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025384 Faap100 ENSMUST00000152346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025384 Faap100 ENSMUST00000148520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025384 Faap100 ENSMUST00000129203 - NO_TRANSLATION retained_intron ENSMUSG00000025384 Faap100 ENSMUST00000026448 ENSMUSP00000026448 TRANSLATION protein_coding - CCDS49004.1 1 879.0 0.0 0.0 4.1 641.3 0.0 -4,-7 1.0 12 8.0 PRINCIPAL:1 ENSMUSG00000025384 Faap100 ENSMUST00000135635 - NO_TRANSLATION retained_intron ENSMUSG00000025384 Faap100 ENSMUST00000154826 - NO_TRANSLATION retained_intron ENSMUSG00000018930 Ccl4 ENSMUST00000019074 ENSMUSP00000019074 TRANSLATION protein_coding - CCDS36256.1 1 92.0 0.0 2.05 16.7 83.6 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020919 Stat5b ENSMUST00000126266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020919 Stat5b ENSMUST00000004143 ENSMUSP00000004143 TRANSLATION protein_coding - CCDS25438.1 1 786.0 0.0 13.55 23.5 720.7 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000020919 Stat5b ENSMUST00000107358 ENSMUSP00000102981 TRANSLATION protein_coding - CCDS25438.1 1 786.0 0.0 13.55 23.5 720.7 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000062511 4930512M02Rik ENSMUST00000149910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062511 4930512M02Rik ENSMUST00000081896 ENSMUSP00000080571 TRANSLATION protein_coding - CCDS78919.1 1 218.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.8957 - 0.0 PRINCIPAL:1 ENSMUSG00000037278 Tmem97 ENSMUST00000103242 ENSMUSP00000099532 TRANSLATION protein_coding - CCDS25112.1 1 176.0 0.0 3.0 5.0 164.2 0.0 -3,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000004788 Eif2b2 ENSMUST00000150935 - NO_TRANSLATION retained_intron ENSMUSG00000004788 Eif2b2 ENSMUST00000136495 ENSMUSP00000122720 TRANSLATION protein_coding stop - 5 302.0 0.0 6.07 3.2 164.9 0.0 -4,-5 0.0406 6 -2.0 MINOR ENSMUSG00000004788 Eif2b2 ENSMUST00000004910 ENSMUSP00000004910 TRANSLATION protein_coding - CCDS26053.1 1 351.0 0.0 7.07 29.2 305.3 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000004788 Eif2b2 ENSMUST00000151925 - NO_TRANSLATION retained_intron ENSMUSG00000004788 Eif2b2 ENSMUST00000140900 ENSMUSP00000122954 TRANSLATION protein_coding stop - 5 228.0 0.0 4.32 0.0 165.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000004788 Eif2b2 ENSMUST00000130760 - NO_TRANSLATION retained_intron ENSMUSG00000004788 Eif2b2 ENSMUST00000128709 - NO_TRANSLATION retained_intron ENSMUSG00000018707 Dync1h1 ENSMUST00000172218 - NO_TRANSLATION retained_intron ENSMUSG00000018707 Dync1h1 ENSMUST00000171535 - NO_TRANSLATION retained_intron ENSMUSG00000018707 Dync1h1 ENSMUST00000018851 ENSMUSP00000018851 TRANSLATION protein_coding - CCDS36559.1 1 4644.0 63.0 60.5725 0.0 2321.9 0.0 -4,-5 1.0 190 18.0 PRINCIPAL:1 ENSMUSG00000018707 Dync1h1 ENSMUST00000170024 - NO_TRANSLATION retained_intron ENSMUSG00000018707 Dync1h1 ENSMUST00000167395 ENSMUSP00000126117 TRANSLATION protein_coding start/stop - 3 252.0 0.0 5.0 0.0 131.8 0.0 -4,-6 0.0 10 -2.0 MINOR ENSMUSG00000018707 Dync1h1 ENSMUST00000166185 - NO_TRANSLATION retained_intron ENSMUSG00000018707 Dync1h1 ENSMUST00000166323 - NO_TRANSLATION retained_intron ENSMUSG00000018707 Dync1h1 ENSMUST00000107660 - NO_TRANSLATION retained_intron ENSMUSG00000020590 Snx13 ENSMUST00000221870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020590 Snx13 ENSMUST00000221272 ENSMUSP00000152167 TRANSLATION nonsense_mediated_decay - - 1 43.0 0.0 0.0 0.0 0.0 3.0 -2,-5 0.0002 - -2.0 MINOR ENSMUSG00000020590 Snx13 ENSMUST00000222101 - NO_TRANSLATION retained_intron ENSMUSG00000020590 Snx13 ENSMUST00000221831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020590 Snx13 ENSMUST00000221876 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020590 Snx13 ENSMUST00000163677 ENSMUSP00000130182 TRANSLATION protein_coding - - 1 777.0 0.0 3.18 0.0 301.9 5.0 -1,-5 0.0747 13 6.204 MINOR ENSMUSG00000020590 Snx13 ENSMUST00000048519 ENSMUSP00000038430 TRANSLATION protein_coding - - 1 957.0 0.0 3.18 15.0 398.5 5.0 -1,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000020564 Atxn7l1 ENSMUST00000090597 ENSMUSP00000088085 TRANSLATION protein_coding - CCDS25875.1 1 739.0 5.0 1.25 0.0 95.8 0.0 -4,-1 0.4686 4 11.75 MINOR ENSMUSG00000020564 Atxn7l1 ENSMUST00000133549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020564 Atxn7l1 ENSMUST00000110824 ENSMUSP00000106448 TRANSLATION protein_coding - CCDS25874.2 1 146.0 3.0 0.0 8.7 0.0 0.0 -4,-6 1.0 - 5.25 MINOR ENSMUSG00000020564 Atxn7l1 ENSMUST00000130740 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020564 Atxn7l1 ENSMUST00000154742 ENSMUSP00000122982 TRANSLATION protein_coding - - 1 741.0 5.0 1.25 0.0 95.8 0.0 -4,-1 0.1691 4 11.75 MINOR ENSMUSG00000020564 Atxn7l1 ENSMUST00000136644 ENSMUSP00000151520 TRANSLATION protein_coding - - 1 142.0 3.0 0.0 0.0 0.0 0.0 -4,-7 0.0006 1 2.25 MINOR ENSMUSG00000020564 Atxn7l1 ENSMUST00000142184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020564 Atxn7l1 ENSMUST00000155386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020564 Atxn7l1 ENSMUST00000126275 - NO_TRANSLATION retained_intron ENSMUSG00000020564 Atxn7l1 ENSMUST00000077456 ENSMUSP00000076668 TRANSLATION protein_coding - - 1 123.0 3.0 0.0 0.0 0.0 0.0 -4,-6 0.0006 - 2.25 MINOR ENSMUSG00000020564 Atxn7l1 ENSMUST00000146040 ENSMUSP00000122156 TRANSLATION protein_coding - - 5 927.0 8.0 1.25 0.0 95.8 0.0 -4,-6 0.757 4 14.0 PRINCIPAL:2 ENSMUSG00000020564 Atxn7l1 ENSMUST00000125192 ENSMUSP00000118777 TRANSLATION protein_coding - - 5 824.0 8.0 1.25 0.0 95.8 0.0 -4,-6 0.1295 4 14.0 ALTERNATIVE:2 ENSMUSG00000020564 Atxn7l1 ENSMUST00000144586 ENSMUSP00000151570 TRANSLATION protein_coding - - 1 52.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000020564 Atxn7l1 ENSMUST00000145589 - NO_TRANSLATION retained_intron ENSMUSG00000054204 Alkal2 ENSMUST00000067087 ENSMUSP00000070037 TRANSLATION protein_coding - CCDS49044.1 1 151.0 0.0 0.0 2.2 187.5 0.0 3,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000072825 Cep170b ENSMUST00000221125 - NO_TRANSLATION retained_intron ENSMUSG00000072825 Cep170b ENSMUST00000223104 - NO_TRANSLATION retained_intron ENSMUSG00000072825 Cep170b ENSMUST00000222711 ENSMUSP00000152451 TRANSLATION protein_coding - CCDS56867.1 5 1574.0 0.0 3.6 0.4 1059.3 0.0 -4,0 1.0 47 12.0 PRINCIPAL:1 ENSMUSG00000072825 Cep170b ENSMUST00000220627 ENSMUSP00000152143 TRANSLATION protein_coding - - 1 1539.0 0.0 3.6 0.4 537.5 0.0 -4,0 0.1696 47 6.0 MINOR ENSMUSG00000072825 Cep170b ENSMUST00000222612 - NO_TRANSLATION retained_intron ENSMUSG00000072825 Cep170b ENSMUST00000222532 - NO_TRANSLATION retained_intron ENSMUSG00000072825 Cep170b ENSMUST00000101018 ENSMUSP00000098580 TRANSLATION protein_coding - CCDS56867.1 1 1574.0 0.0 3.6 0.4 1059.3 0.0 -4,0 1.0 47 12.0 PRINCIPAL:1 ENSMUSG00000072825 Cep170b ENSMUST00000221853 - NO_TRANSLATION retained_intron ENSMUSG00000072825 Cep170b ENSMUST00000220942 ENSMUSP00000152673 TRANSLATION protein_coding stop - 2 21.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0146 - -2.0 MINOR ENSMUSG00000072825 Cep170b ENSMUST00000221570 - NO_TRANSLATION retained_intron ENSMUSG00000017843 Ppp2r5c ENSMUST00000222276 ENSMUSP00000152369 TRANSLATION protein_coding - - 2 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000017843 Ppp2r5c ENSMUST00000084985 ENSMUSP00000082053 TRANSLATION protein_coding - CCDS36557.1 2 524.0 0.0 10.15 0.0 662.7 0.0 -4,-5 0.1722 12 12.0 MINOR ENSMUSG00000017843 Ppp2r5c ENSMUST00000220509 ENSMUSP00000152095 TRANSLATION protein_coding stop - 5 283.0 0.0 4.7 0.0 308.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000017843 Ppp2r5c ENSMUST00000109832 ENSMUSP00000105458 TRANSLATION protein_coding - CCDS36558.1 2 485.0 0.0 9.95 23.4 662.7 0.0 -4,-5 1.0 12 15.598 PRINCIPAL:1 ENSMUSG00000017843 Ppp2r5c ENSMUST00000221715 ENSMUSP00000152865 TRANSLATION protein_coding - - 1 452.0 0.0 9.95 4.3 662.7 0.0 -4,-5 0.1892 9 12.186 MINOR ENSMUSG00000017843 Ppp2r5c ENSMUST00000223168 - NO_TRANSLATION retained_intron ENSMUSG00000017843 Ppp2r5c ENSMUST00000221074 ENSMUSP00000152282 TRANSLATION protein_coding - - 5 496.0 0.0 10.15 2.9 662.7 0.0 -4,-5 0.2997 9 12.34 MINOR ENSMUSG00000020963 Tshr ENSMUST00000221216 ENSMUSP00000152158 TRANSLATION protein_coding - - 5 207.0 0.0 4.55 0.0 0.0 0.0 -4,-5 0.0 2 0.042 MINOR ENSMUSG00000020963 Tshr ENSMUST00000021343 ENSMUSP00000021343 TRANSLATION protein_coding - CCDS49135.1 1 245.0 0.0 6.25 0.0 29.0 0.0 3,-2 0.0391 2 3.516 MINOR ENSMUSG00000020963 Tshr ENSMUST00000186437 ENSMUSP00000139632 TRANSLATION protein_coding start - 3 127.0 0.0 0.32 0.0 24.2 3.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000020963 Tshr ENSMUST00000222686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020963 Tshr ENSMUST00000021346 ENSMUSP00000021346 TRANSLATION protein_coding - CCDS26088.1 1 764.0 0.0 7.53 0.0 127.7 8.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000096576 Oog1 ENSMUST00000222332 ENSMUSP00000152464 TRANSLATION protein_coding - - 5 326.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0275 - 3.888 MINOR ENSMUSG00000096576 Oog1 ENSMUST00000222112 ENSMUSP00000152182 TRANSLATION protein_coding - - 1 306.0 0.0 1.56 0.0 0.0 0.0 -4,-5 0.0247 - 4.332 MINOR ENSMUSG00000096576 Oog1 ENSMUST00000095509 ENSMUSP00000093165 TRANSLATION protein_coding - CCDS49123.1 1 496.0 0.0 2.16 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000076670 Ighv3-5 ENSMUST00000195619 ENSMUSP00000141480 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 0.0 53.0 0.0 3,-2 0.8311 - -2.0 PRINCIPAL:5 ENSMUSG00000076670 Ighv3-5 ENSMUST00000103479 ENSMUSP00000100260 TRANSLATION IG_V_gene start/stop - - 99.0 3.0 1.0 0.0 53.0 0.0 -4,-5 0.0588 - -2.0 ALTERNATIVE:2 ENSMUSG00000103203 Gm37327 ENSMUST00000193012 ENSMUSP00000142226 TRANSLATION IG_D_gene start/stop - - 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000025321 Itgb8 ENSMUST00000026360 ENSMUSP00000026360 TRANSLATION protein_coding - CCDS36580.1 1 767.0 10.0 8.75 10.4 418.3 0.0 -1,-4 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000025321 Itgb8 ENSMUST00000151023 - NO_TRANSLATION retained_intron ENSMUSG00000025321 Itgb8 ENSMUST00000137804 - NO_TRANSLATION retained_intron ENSMUSG00000021118 Plek2 ENSMUST00000021544 ENSMUSP00000021544 TRANSLATION protein_coding - CCDS26004.1 1 353.0 0.0 6.68 14.4 168.0 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000071234 Syndig1l ENSMUST00000221905 ENSMUSP00000152304 TRANSLATION protein_coding stop - 2 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071234 Syndig1l ENSMUST00000221793 - NO_TRANSLATION retained_intron ENSMUSG00000071234 Syndig1l ENSMUST00000222422 ENSMUSP00000152374 TRANSLATION protein_coding - CCDS26049.1 1 237.0 0.0 0.8 11.4 59.1 2.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000071234 Syndig1l ENSMUST00000095550 ENSMUSP00000093206 TRANSLATION protein_coding - CCDS26049.1 1 237.0 0.0 0.8 11.4 59.1 2.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000020673 Tpo ENSMUST00000155263 ENSMUSP00000133853 TRANSLATION protein_coding - - 1 164.0 0.0 0.838 0.0 0.0 1.0 -1,-5 0.0 2 0.0 MINOR ENSMUSG00000020673 Tpo ENSMUST00000140875 - NO_TRANSLATION retained_intron ENSMUSG00000020673 Tpo ENSMUST00000021005 ENSMUSP00000021005 TRANSLATION protein_coding - CCDS25857.1 1 914.0 24.0 7.478 0.4 668.7 2.0 -1,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000049036 Tmem121 ENSMUST00000058491 ENSMUSP00000055994 TRANSLATION protein_coding - CCDS26206.1 1 318.0 0.0 0.0 31.2 194.8 0.0 -3,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000021113 Snapc1 ENSMUST00000220882 ENSMUSP00000152248 TRANSLATION protein_coding start - 5 195.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021113 Snapc1 ENSMUST00000221556 ENSMUSP00000152102 TRANSLATION nonsense_mediated_decay start - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021113 Snapc1 ENSMUST00000222025 ENSMUSP00000152584 TRANSLATION nonsense_mediated_decay - - 2 72.0 0.0 0.4 0.0 42.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021113 Snapc1 ENSMUST00000021532 ENSMUSP00000021532 TRANSLATION protein_coding - CCDS25978.1 1 389.0 0.0 0.965 0.4 206.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021113 Snapc1 ENSMUST00000220909 ENSMUSP00000152587 TRANSLATION protein_coding start - 3 129.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019256 Ahr ENSMUST00000110811 ENSMUSP00000106434 TRANSLATION nonsense_mediated_decay - - 1 114.0 0.0 1.0 0.0 28.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000019256 Ahr ENSMUST00000173414 - NO_TRANSLATION retained_intron ENSMUSG00000019256 Ahr ENSMUST00000116436 ENSMUSP00000112137 TRANSLATION protein_coding - CCDS36434.1 1 805.0 0.0 5.24 0.0 128.0 0.0 -4,-6 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000095197 Ighv1-59 ENSMUST00000195359 ENSMUSP00000141949 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 59.6 0.0 3,-2 0.8326 1 -2.0 PRINCIPAL:1 ENSMUSG00000020654 Adcy3 ENSMUST00000134680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020654 Adcy3 ENSMUST00000127110 - NO_TRANSLATION retained_intron ENSMUSG00000020654 Adcy3 ENSMUST00000150944 - NO_TRANSLATION retained_intron ENSMUSG00000020654 Adcy3 ENSMUST00000020984 ENSMUSP00000020984 TRANSLATION protein_coding - CCDS25787.1 1 1145.0 7.0 8.0 11.0 531.2 8.0 -4,-5 1.0 13 15.0 PRINCIPAL:4 ENSMUSG00000020654 Adcy3 ENSMUST00000127756 ENSMUSP00000115406 TRANSLATION protein_coding - CCDS25787.1 5 1145.0 7.0 8.0 11.0 531.2 8.0 -4,-5 1.0 13 15.0 PRINCIPAL:4 ENSMUSG00000020654 Adcy3 ENSMUST00000152065 ENSMUSP00000115644 TRANSLATION protein_coding - CCDS49017.1 1 1144.0 7.0 8.0 11.0 531.2 8.0 -4,-5 0.9995 13 15.0 ALTERNATIVE:1 ENSMUSG00000020654 Adcy3 ENSMUST00000124505 ENSMUSP00000122073 TRANSLATION protein_coding - CCDS49017.1 1 1144.0 7.0 8.0 11.0 531.2 8.0 -4,-5 0.9995 13 15.0 ALTERNATIVE:1 ENSMUSG00000020654 Adcy3 ENSMUST00000152792 - NO_TRANSLATION retained_intron ENSMUSG00000037686 Aspg ENSMUST00000223457 - NO_TRANSLATION retained_intron ENSMUSG00000037686 Aspg ENSMUST00000079400 ENSMUSP00000078369 TRANSLATION protein_coding - CCDS36567.1 1 564.0 9.0 12.445 1.5 248.6 0.0 -4,-7 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000037686 Aspg ENSMUST00000220719 ENSMUSP00000152630 TRANSLATION nonsense_mediated_decay start - 3 68.0 2.0 1.75 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000037686 Aspg ENSMUST00000222645 - NO_TRANSLATION retained_intron ENSMUSG00000037686 Aspg ENSMUST00000223412 ENSMUSP00000152155 TRANSLATION protein_coding start/stop - 3 179.0 5.0 4.91 0.0 99.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000037686 Aspg ENSMUST00000222970 ENSMUSP00000152762 TRANSLATION protein_coding start - 1 156.0 0.0 2.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037686 Aspg ENSMUST00000223184 ENSMUSP00000152728 TRANSLATION nonsense_mediated_decay start - 3 103.0 3.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037686 Aspg ENSMUST00000221091 - NO_TRANSLATION retained_intron ENSMUSG00000051235 Gen1 ENSMUST00000219600 ENSMUSP00000151650 TRANSLATION protein_coding stop - 3 114.0 2.0 2.39 0.0 58.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051235 Gen1 ENSMUST00000166117 ENSMUSP00000132098 TRANSLATION protein_coding - CCDS36403.1 1 908.0 7.0 5.38 0.1 148.5 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000051235 Gen1 ENSMUST00000218259 ENSMUSP00000151740 TRANSLATION nonsense_mediated_decay - - 3 61.0 1.0 1.0 0.0 31.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051235 Gen1 ENSMUST00000218487 ENSMUSP00000151310 TRANSLATION protein_coding stop - 1 739.0 6.0 4.05 0.0 90.4 0.0 -4,-5 0.0095 2 -2.0 MINOR ENSMUSG00000051235 Gen1 ENSMUST00000219537 - NO_TRANSLATION retained_intron ENSMUSG00000051235 Gen1 ENSMUST00000218262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051235 Gen1 ENSMUST00000220261 - NO_TRANSLATION retained_intron ENSMUSG00000051235 Gen1 ENSMUST00000218547 ENSMUSP00000151898 TRANSLATION nonsense_mediated_decay - - 1 358.0 6.0 4.05 0.0 90.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014905 Dnajb9 ENSMUST00000015049 ENSMUSP00000015049 TRANSLATION protein_coding - CCDS25897.1 1 222.0 0.0 1.95 24.9 93.0 0.0 2,-3 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000014905 Dnajb9 ENSMUST00000220421 ENSMUSP00000152011 TRANSLATION protein_coding stop - 2 52.0 0.0 1.0 0.0 33.6 0.0 2,-3 0.0027 1 -2.0 MINOR ENSMUSG00000021263 Degs2 ENSMUST00000021691 ENSMUSP00000021691 TRANSLATION protein_coding - CCDS26162.1 1 323.0 0.0 3.75 32.1 148.3 4.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021263 Degs2 ENSMUST00000167978 ENSMUSP00000125891 TRANSLATION protein_coding - CCDS49170.1 1 286.0 0.0 2.75 0.0 142.6 4.0 -4,-6 0.0497 - 9.66 MINOR ENSMUSG00000021263 Degs2 ENSMUST00000222255 ENSMUSP00000152122 TRANSLATION protein_coding start - 3 98.0 0.0 1.0 0.0 42.5 2.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000002020 Ltbp2 ENSMUST00000168699 - NO_TRANSLATION retained_intron ENSMUSG00000002020 Ltbp2 ENSMUST00000163189 ENSMUSP00000127693 TRANSLATION protein_coding - - 1 1766.0 100.0 16.496 0.3 732.3 0.0 2,2 0.4391 14 8.76 MINOR ENSMUSG00000002020 Ltbp2 ENSMUST00000002073 ENSMUSP00000002073 TRANSLATION protein_coding - - 5 1809.0 109.0 17.296 0.3 759.6 0.0 2,2 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000002020 Ltbp2 ENSMUST00000163214 ENSMUSP00000132067 TRANSLATION protein_coding start/stop - 5 307.0 34.0 5.125 0.0 205.8 0.0 -4,-5 0.0027 1 -2.0 MINOR ENSMUSG00000002020 Ltbp2 ENSMUST00000110254 ENSMUSP00000105883 TRANSLATION protein_coding - CCDS49112.1 1 1786.0 100.0 16.496 0.0 732.3 0.0 -3,1 0.5996 14 8.76 MINOR ENSMUSG00000002020 Ltbp2 ENSMUST00000166383 ENSMUSP00000127255 TRANSLATION protein_coding start/stop - 3 204.0 7.0 1.98 0.0 83.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002020 Ltbp2 ENSMUST00000165141 ENSMUSP00000132690 TRANSLATION protein_coding start/stop - 5 183.0 32.0 4.19 0.0 172.1 0.0 -4,-5 0.001 2 -2.0 MINOR ENSMUSG00000021226 Acot2 ENSMUST00000021649 ENSMUSP00000021649 TRANSLATION protein_coding - CCDS26034.1 1 453.0 3.0 3.0 2.7 422.4 0.0 -4,-1 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000036231 Agr3 ENSMUST00000042101 ENSMUSP00000049212 TRANSLATION protein_coding - CCDS25880.1 1 165.0 7.0 4.2 24.6 83.1 0.0 3,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000036231 Agr3 ENSMUST00000154042 ENSMUSP00000121230 TRANSLATION protein_coding stop - 2 35.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000096074 Ighv1-72 ENSMUST00000103541 ENSMUSP00000100322 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.1 1.0 58.5 0.0 4,-1 0.8297 - -2.0 PRINCIPAL:1 ENSMUSG00000052160 Pld4 ENSMUST00000221115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052160 Pld4 ENSMUST00000222886 - NO_TRANSLATION retained_intron ENSMUSG00000052160 Pld4 ENSMUST00000221811 - NO_TRANSLATION retained_intron ENSMUSG00000052160 Pld4 ENSMUST00000220826 - NO_TRANSLATION retained_intron ENSMUSG00000052160 Pld4 ENSMUST00000063888 ENSMUSP00000067002 TRANSLATION protein_coding - CCDS26195.1 1 503.0 0.0 8.0 0.7 102.6 0.0 -4,-7 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000073079 Srp54a ENSMUST00000223111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073079 Srp54a ENSMUST00000221479 - NO_TRANSLATION retained_intron ENSMUSG00000073079 Srp54a ENSMUST00000220578 ENSMUSP00000152764 TRANSLATION protein_coding - CCDS36449.1 1 504.0 12.0 13.01 35.3 443.7 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000073079 Srp54a ENSMUST00000021407 ENSMUSP00000021407 TRANSLATION protein_coding - CCDS36449.1 5 504.0 12.0 13.01 35.3 443.7 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000073079 Srp54a ENSMUST00000222027 ENSMUSP00000152541 TRANSLATION protein_coding start - 3 89.0 0.0 2.2896 0.0 74.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073079 Srp54a ENSMUST00000221655 ENSMUSP00000152448 TRANSLATION protein_coding stop - 3 110.0 0.0 3.33 0.0 78.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000044067 Gpr22 ENSMUST00000236002 ENSMUSP00000158030 TRANSLATION protein_coding - CCDS25866.2 - 469.0 0.0 0.4 0.1 80.5 7.0 -4,-5 0.3014 1 12.0 MINOR ENSMUSG00000044067 Gpr22 ENSMUST00000176710 ENSMUSP00000134839 TRANSLATION protein_coding - - 5 432.0 0.0 0.4 26.8 80.5 7.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000044067 Gpr22 ENSMUST00000174480 ENSMUSP00000134674 TRANSLATION protein_coding stop - 5 187.0 0.0 0.4 0.0 35.4 5.0 -4,-7 0.0358 - -2.0 MINOR ENSMUSG00000044067 Gpr22 ENSMUST00000057783 ENSMUSP00000056125 TRANSLATION protein_coding - - 1 432.0 0.0 0.4 26.8 80.5 7.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000076617 Ighm ENSMUST00000103426 ENSMUSP00000100222 TRANSLATION IG_C_gene start - - 455.0 0.0 4.3 0.0 201.1 0.0 -4,-5 0.0688 18 -2.0 PRINCIPAL:3 ENSMUSG00000076617 Ighm ENSMUST00000177715 ENSMUSP00000136807 TRANSLATION IG_C_gene start - - 476.0 0.0 3.8 0.0 201.1 0.0 -4,-5 0.678 17 -2.0 ALTERNATIVE:2 ENSMUSG00000072949 Acot1 ENSMUST00000222591 - NO_TRANSLATION retained_intron ENSMUSG00000072949 Acot1 ENSMUST00000168120 ENSMUSP00000126448 TRANSLATION protein_coding - CCDS36487.1 1 419.0 3.0 4.5 7.3 426.2 0.0 -4,-5 1.0 2 17.0 PRINCIPAL:1 ENSMUSG00000072949 Acot1 ENSMUST00000220901 ENSMUSP00000152857 TRANSLATION protein_coding start - 2 152.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000072949 Acot1 ENSMUST00000222862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095595 Fam177a ENSMUST00000177768 ENSMUSP00000137299 TRANSLATION protein_coding - CCDS25913.1 1 207.0 0.0 1.3 2.9 154.2 0.0 -4,-5 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000096649 Ighv1-31 ENSMUST00000103511 ENSMUSP00000100292 TRANSLATION IG_V_gene start/stop - - 98.0 3.0 1.0 0.0 55.7 0.0 -4,-5 0.0232 - -2.0 ALTERNATIVE:2 ENSMUSG00000096649 Ighv1-31 ENSMUST00000195735 ENSMUSP00000141586 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.25 1.0 55.7 0.0 3,-2 0.8527 - -2.0 PRINCIPAL:5 ENSMUSG00000007411 Mark3 ENSMUST00000221753 ENSMUSP00000152727 TRANSLATION protein_coding - - 5 797.0 19.0 9.16 11.6 350.3 0.0 -4,-5 0.7532 15 16.556 MINOR ENSMUSG00000007411 Mark3 ENSMUST00000221448 ENSMUSP00000152377 TRANSLATION nonsense_mediated_decay - - 2 111.0 8.0 1.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000007411 Mark3 ENSMUST00000221390 - NO_TRANSLATION retained_intron ENSMUSG00000007411 Mark3 ENSMUST00000221923 - NO_TRANSLATION retained_intron ENSMUSG00000007411 Mark3 ENSMUST00000075281 ENSMUSP00000074757 TRANSLATION protein_coding - CCDS26182.1 1 729.0 19.0 9.16 11.4 350.3 0.0 -4,-5 0.9466 15 16.508 MINOR ENSMUSG00000007411 Mark3 ENSMUST00000221009 - NO_TRANSLATION retained_intron ENSMUSG00000007411 Mark3 ENSMUST00000221459 ENSMUSP00000152483 TRANSLATION protein_coding - - 5 753.0 19.0 9.16 17.6 350.3 0.0 -4,-5 0.9019 15 18.0 ALTERNATIVE:1 ENSMUSG00000007411 Mark3 ENSMUST00000222870 ENSMUSP00000152833 TRANSLATION nonsense_mediated_decay start - 3 54.0 1.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007411 Mark3 ENSMUST00000221841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007411 Mark3 ENSMUST00000222080 - NO_TRANSLATION retained_intron ENSMUSG00000007411 Mark3 ENSMUST00000084953 ENSMUSP00000082017 TRANSLATION protein_coding - CCDS26181.1 1 744.0 19.0 9.16 13.4 350.3 0.0 -4,-5 1.0 15 16.988 PRINCIPAL:4 ENSMUSG00000007411 Mark3 ENSMUST00000221631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021254 Gpatch2l ENSMUST00000220646 - NO_TRANSLATION retained_intron ENSMUSG00000021254 Gpatch2l ENSMUST00000071106 ENSMUSP00000065858 TRANSLATION protein_coding - - 1 408.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.606 3 0.0 PRINCIPAL:2 ENSMUSG00000021254 Gpatch2l ENSMUST00000221368 ENSMUSP00000152284 TRANSLATION protein_coding - CCDS26065.1 1 482.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.229 3 0.0 ALTERNATIVE:2 ENSMUSG00000021254 Gpatch2l ENSMUST00000222299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021254 Gpatch2l ENSMUST00000220810 - NO_TRANSLATION retained_intron ENSMUSG00000076731 Ighv8-12 ENSMUST00000199266 ENSMUSP00000142333 TRANSLATION IG_V_gene stop - - 119.0 6.0 1.0 0.0 54.8 0.0 3,-2 0.8258 1 -2.0 PRINCIPAL:1 ENSMUSG00000020580 Rock2 ENSMUST00000221463 ENSMUSP00000152414 TRANSLATION protein_coding start - 1 262.0 7.0 3.5 0.0 25.4 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000020580 Rock2 ENSMUST00000220542 - NO_TRANSLATION retained_intron ENSMUSG00000020580 Rock2 ENSMUST00000220688 ENSMUSP00000152813 TRANSLATION protein_coding stop - 1 1444.0 25.0 12.4 2.3 321.8 0.0 -4,-5 0.3802 42 -2.0 MINOR ENSMUSG00000020580 Rock2 ENSMUST00000020904 ENSMUSP00000020904 TRANSLATION protein_coding - CCDS36410.1 5 1388.0 25.0 12.4 5.8 321.8 0.0 -4,-5 1.0 43 20.0 PRINCIPAL:1 ENSMUSG00000048483 Zdhhc22 ENSMUST00000095521 ENSMUSP00000093177 TRANSLATION protein_coding - CCDS36500.1 1 263.0 2.0 0.4 13.2 84.3 4.0 -1,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000048483 Zdhhc22 ENSMUST00000223336 - NO_TRANSLATION retained_intron ENSMUSG00000048483 Zdhhc22 ENSMUST00000222543 ENSMUSP00000152660 TRANSLATION protein_coding - CCDS36500.1 3 263.0 2.0 0.4 13.2 84.3 4.0 -1,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000021131 Erh ENSMUST00000166931 ENSMUSP00000129620 TRANSLATION protein_coding - CCDS83973.1 2 123.0 0.0 3.0 0.1 154.3 0.0 -4,-5 0.1471 1 12.0 MINOR ENSMUSG00000021131 Erh ENSMUST00000218364 ENSMUSP00000151797 TRANSLATION protein_coding - - 3 89.0 0.0 2.066 0.0 115.8 0.0 -4,-6 0.0 - 7.824 MINOR ENSMUSG00000021131 Erh ENSMUST00000021559 ENSMUSP00000021559 TRANSLATION protein_coding - CCDS36483.1 1 104.0 0.0 3.0 33.1 154.3 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021131 Erh ENSMUST00000218336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021131 Erh ENSMUST00000218740 ENSMUSP00000151676 TRANSLATION protein_coding - - 2 71.0 0.0 2.0 0.0 112.9 0.0 -4,-6 0.0074 - 7.518 MINOR ENSMUSG00000072919 Noxred1 ENSMUST00000222480 ENSMUSP00000152486 TRANSLATION protein_coding - CCDS36502.1 1 366.0 17.0 0.7 0.1 34.3 0.0 -4,-5 0.9625 1 17.652 PRINCIPAL:1 ENSMUSG00000072919 Noxred1 ENSMUST00000221768 ENSMUSP00000152360 TRANSLATION protein_coding stop - 5 183.0 17.0 0.7 0.0 36.4 0.0 -4,-5 0.0775 1 -2.0 MINOR ENSMUSG00000072919 Noxred1 ENSMUST00000021423 ENSMUSP00000021423 TRANSLATION protein_coding - CCDS36502.1 5 366.0 17.0 0.7 0.1 34.3 0.0 -4,-5 0.9625 1 17.652 PRINCIPAL:1 ENSMUSG00000020576 Nbas ENSMUST00000042953 ENSMUSP00000036082 TRANSLATION protein_coding - CCDS49031.1 5 2356.0 0.0 0.0 0.1 662.4 0.0 -4,-5 1.0 47 6.0 PRINCIPAL:1 ENSMUSG00000020576 Nbas ENSMUST00000223081 - NO_TRANSLATION retained_intron ENSMUSG00000020576 Nbas ENSMUST00000221212 - NO_TRANSLATION retained_intron ENSMUSG00000020576 Nbas ENSMUST00000223424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020576 Nbas ENSMUST00000221714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076615 Ighg3 ENSMUST00000103423 ENSMUSP00000100219 TRANSLATION IG_C_gene start - - 330.0 6.0 3.3 0.0 212.7 0.0 -4,-7 0.0518 8 -2.0 ALTERNATIVE:2 ENSMUSG00000076615 Ighg3 ENSMUST00000223179 ENSMUSP00000152559 TRANSLATION IG_C_gene start - - 399.0 6.0 3.3 0.0 212.7 0.0 -4,-7 0.7536 8 -2.0 PRINCIPAL:5 ENSMUSG00000057265 Bbof1 ENSMUST00000153540 ENSMUSP00000114625 TRANSLATION nonsense_mediated_decay start - 3 108.0 0.0 1.725 0.0 59.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057265 Bbof1 ENSMUST00000151789 ENSMUSP00000115708 TRANSLATION protein_coding start/stop - 3 147.0 0.0 2.175 0.0 93.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057265 Bbof1 ENSMUST00000081828 ENSMUSP00000080512 TRANSLATION protein_coding - CCDS36492.1 1 533.0 0.0 3.975 0.1 141.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057265 Bbof1 ENSMUST00000221969 ENSMUSP00000152383 TRANSLATION protein_coding start - 1 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043319 Cox8c ENSMUST00000053611 ENSMUSP00000056155 TRANSLATION protein_coding - CCDS56857.1 1 72.0 0.0 1.0 0.1 40.5 0.0 -2,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047022 Mipol1 ENSMUST00000153755 - NO_TRANSLATION retained_intron ENSMUSG00000047022 Mipol1 ENSMUST00000130447 ENSMUSP00000119918 TRANSLATION protein_coding - - 5 400.0 0.0 0.0 1.8 0.0 0.0 -4,-5 1.0 2 1.0 PRINCIPAL:2 ENSMUSG00000047022 Mipol1 ENSMUST00000148418 - NO_TRANSLATION retained_intron ENSMUSG00000047022 Mipol1 ENSMUST00000153439 - NO_TRANSLATION retained_intron ENSMUSG00000047022 Mipol1 ENSMUST00000136006 - NO_TRANSLATION retained_intron ENSMUSG00000047022 Mipol1 ENSMUST00000153137 ENSMUSP00000117005 TRANSLATION protein_coding - - 5 419.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0932 2 0.0 ALTERNATIVE:2 ENSMUSG00000047022 Mipol1 ENSMUST00000150292 - NO_TRANSLATION retained_intron ENSMUSG00000047022 Mipol1 ENSMUST00000128945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047022 Mipol1 ENSMUST00000145003 ENSMUSP00000121617 TRANSLATION protein_coding - CCDS49070.1 1 379.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.3971 2 0.125 ALTERNATIVE:2 ENSMUSG00000047022 Mipol1 ENSMUST00000123498 ENSMUSP00000119636 TRANSLATION protein_coding - - 5 400.0 0.0 0.0 1.8 0.0 0.0 -4,-5 1.0 2 1.0 PRINCIPAL:2 ENSMUSG00000021094 Dhrs7 ENSMUST00000221674 - NO_TRANSLATION retained_intron ENSMUSG00000021094 Dhrs7 ENSMUST00000021512 ENSMUSP00000021512 TRANSLATION protein_coding - CCDS49086.1 1 338.0 27.0 6.5 10.2 170.9 0.0 2,-2 1.0 12 20.1 PRINCIPAL:1 ENSMUSG00000021094 Dhrs7 ENSMUST00000220821 ENSMUSP00000152329 TRANSLATION nonsense_mediated_decay - - 5 96.0 8.0 2.0 0.0 30.2 0.0 2,-2 0.0018 - -2.0 MINOR ENSMUSG00000021094 Dhrs7 ENSMUST00000221750 ENSMUSP00000152198 TRANSLATION protein_coding start - 5 362.0 27.0 6.95 0.0 161.3 0.0 2,-2 0.0579 11 -2.0 MINOR ENSMUSG00000043487 Acot6 ENSMUST00000222921 ENSMUSP00000152129 TRANSLATION protein_coding - - - 176.0 0.0 1.0 0.0 147.9 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000043487 Acot6 ENSMUST00000056822 ENSMUSP00000056131 TRANSLATION protein_coding - CCDS26038.1 1 419.0 3.0 3.0 13.9 407.7 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000071177 Serpina1d ENSMUST00000078869 ENSMUSP00000077909 TRANSLATION protein_coding - CCDS26139.1 1 413.0 0.0 4.0 6.0 398.0 0.0 4,-1 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000066441 Rdh11 ENSMUST00000159500 ENSMUSP00000123829 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.45 0.0 0.0 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000066441 Rdh11 ENSMUST00000161204 ENSMUSP00000124066 TRANSLATION protein_coding - CCDS36480.1 1 316.0 27.0 6.95 3.9 118.7 0.0 2,-2 1.0 6 13.0 PRINCIPAL:2 ENSMUSG00000066441 Rdh11 ENSMUST00000085254 ENSMUSP00000082352 TRANSLATION protein_coding - - 1 300.0 27.0 6.83 3.0 118.7 0.0 -4,-7 0.6234 6 12.45 ALTERNATIVE:2 ENSMUSG00000073197 5730507C01Rik ENSMUST00000063216 ENSMUSP00000099112 TRANSLATION protein_coding - CCDS49035.1 1 392.0 31.0 1.575 0.0 184.5 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000073197 5730507C01Rik ENSMUST00000177778 ENSMUSP00000137525 TRANSLATION protein_coding - CCDS56831.1 1 416.0 31.0 1.575 0.0 184.5 0.0 -4,-5 0.2893 - 14.0 ALTERNATIVE:2 ENSMUSG00000021000 Mia2 ENSMUST00000175837 ENSMUSP00000134828 TRANSLATION nonsense_mediated_decay start - 5 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000176727 ENSMUSP00000135694 TRANSLATION nonsense_mediated_decay - - 1 65.0 0.0 0.0 0.0 0.0 1.0 -4,-6 0.0037 - -2.0 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000177222 - NO_TRANSLATION retained_intron ENSMUSG00000021000 Mia2 ENSMUST00000176464 ENSMUSP00000135390 TRANSLATION protein_coding - - 5 796.0 0.0 2.42175 1.1 0.0 1.0 -4,-2 0.1047 37 4.41 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000176617 ENSMUSP00000135105 TRANSLATION nonsense_mediated_decay start - 1 269.0 0.0 1.023 0.0 0.0 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000175803 - NO_TRANSLATION retained_intron ENSMUSG00000021000 Mia2 ENSMUST00000069430 ENSMUSP00000070572 TRANSLATION protein_coding - CCDS36458.2 1 794.0 0.0 2.42175 2.2 0.0 1.0 -4,-7 0.5045 36 4.803 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000175659 - NO_TRANSLATION retained_intron ENSMUSG00000021000 Mia2 ENSMUST00000176322 ENSMUSP00000135100 TRANSLATION protein_coding - - 5 805.0 0.0 2.42175 1.1 0.0 1.0 -4,-2 0.1047 37 4.41 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000176892 ENSMUSP00000135245 TRANSLATION protein_coding - CCDS56840.1 1 761.0 0.0 1.97175 0.8 0.0 1.0 -4,-7 0.148 35 3.474 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000175912 ENSMUSP00000135251 TRANSLATION protein_coding - - 5 785.0 0.0 2.42175 3.8 0.0 1.0 -4,-7 0.6726 36 5.374 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000219140 ENSMUSP00000151482 TRANSLATION protein_coding - - 5 1397.0 0.0 3.23425 0.0 39.5 1.0 2,-4 1.0 39 12.0 PRINCIPAL:1 ENSMUSG00000021000 Mia2 ENSMUST00000177460 ENSMUSP00000134887 TRANSLATION protein_coding stop - 3 136.0 0.0 1.15 0.0 0.0 1.0 -4,-7 0.0037 1 -2.0 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000170992 ENSMUSP00000126538 TRANSLATION protein_coding - CCDS49071.1 1 772.0 0.0 1.97175 0.0 0.0 1.0 -4,-2 0.0926 36 3.474 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000176336 ENSMUSP00000134872 TRANSLATION nonsense_mediated_decay start - 5 514.0 0.0 2.42175 0.0 0.0 1.0 -2,-5 0.0066 24 -2.0 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000177162 ENSMUSP00000135001 TRANSLATION protein_coding - - 5 753.0 0.0 2.42175 1.1 0.0 1.0 -4,-2 0.1047 34 4.41 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000175685 - NO_TRANSLATION retained_intron ENSMUSG00000021000 Mia2 ENSMUST00000175877 ENSMUSP00000135440 TRANSLATION protein_coding - - 5 701.0 0.0 1.97175 1.0 0.0 1.0 -4,-5 0.101 32 3.474 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000176752 ENSMUSP00000134972 TRANSLATION nonsense_mediated_decay - - 5 65.0 0.0 0.0 0.0 0.0 1.0 -4,-6 0.0037 - -2.0 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000176223 - NO_TRANSLATION retained_intron ENSMUSG00000021000 Mia2 ENSMUST00000177225 ENSMUSP00000135618 TRANSLATION protein_coding - - 5 725.0 0.0 2.42175 2.0 0.0 1.0 -4,-5 0.4112 33 4.731 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000177370 ENSMUSP00000135179 TRANSLATION protein_coding stop - 3 185.0 0.0 0.94875 0.0 0.0 1.0 -4,-7 0.0037 5 -2.0 MINOR ENSMUSG00000021000 Mia2 ENSMUST00000221093 - NO_TRANSLATION retained_intron ENSMUSG00000096884 Ighd5-4 ENSMUST00000177646 ENSMUSP00000141852 TRANSLATION IG_D_gene start/stop - - 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000095117 Ighv8-9 ENSMUST00000197803 ENSMUSP00000142895 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.0 0.0 44.6 0.0 2,-3 0.8266 - -2.0 PRINCIPAL:5 ENSMUSG00000095117 Ighv8-9 ENSMUST00000103533 ENSMUSP00000100314 TRANSLATION IG_V_gene start/stop - - 100.0 3.0 1.0 0.0 44.6 0.0 -4,-6 0.0588 - -2.0 ALTERNATIVE:2 ENSMUSG00000037638 Zbtb42 ENSMUST00000173942 ENSMUSP00000133987 TRANSLATION protein_coding stop - 3 110.0 0.0 0.6 0.0 20.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037638 Zbtb42 ENSMUST00000174780 ENSMUSP00000134028 TRANSLATION protein_coding - - 2 60.0 0.0 0.6 0.0 20.9 0.0 -4,-5 0.0 - 1.956 MINOR ENSMUSG00000037638 Zbtb42 ENSMUST00000169593 ENSMUSP00000133152 TRANSLATION protein_coding - CCDS49190.1 2 420.0 15.0 1.84 4.3 145.2 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000020628 Trappc12 ENSMUST00000223447 - NO_TRANSLATION retained_intron ENSMUSG00000020628 Trappc12 ENSMUST00000020954 ENSMUSP00000020954 TRANSLATION protein_coding - CCDS25854.1 1 797.0 0.0 8.25 4.0 27.9 0.0 -4,-5 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000020628 Trappc12 ENSMUST00000168129 ENSMUSP00000127752 TRANSLATION protein_coding - CCDS25854.1 1 797.0 0.0 8.25 4.0 27.9 0.0 -4,-5 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000020628 Trappc12 ENSMUST00000221335 - NO_TRANSLATION retained_intron ENSMUSG00000020628 Trappc12 ENSMUST00000223552 - NO_TRANSLATION retained_intron ENSMUSG00000020628 Trappc12 ENSMUST00000221783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020628 Trappc12 ENSMUST00000170994 ENSMUSP00000132009 TRANSLATION protein_coding - CCDS49040.1 1 580.0 0.0 4.165 0.0 0.0 0.0 -4,-5 0.0132 11 0.0 MINOR ENSMUSG00000020948 Klhl28 ENSMUST00000221957 - NO_TRANSLATION retained_intron ENSMUSG00000020948 Klhl28 ENSMUST00000222508 ENSMUSP00000152602 TRANSLATION protein_coding - CCDS25938.1 1 571.0 0.0 4.0 36.9 449.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020948 Klhl28 ENSMUST00000021331 ENSMUSP00000021331 TRANSLATION protein_coding - CCDS25938.1 1 571.0 0.0 4.0 36.9 449.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000045064 Zc2hc1c ENSMUST00000239335 ENSMUSP00000159225 TRANSLATION protein_coding - - - 442.0 3.0 0.0 0.0 30.9 0.0 -4,-5 0.003 - 5.91 MINOR ENSMUSG00000045064 Zc2hc1c ENSMUST00000059341 ENSMUSP00000051664 TRANSLATION protein_coding - CCDS26056.1 1 527.0 3.0 0.198 0.1 63.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045064 Zc2hc1c ENSMUST00000239352 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020671 Rab10 ENSMUST00000021001 ENSMUSP00000021001 TRANSLATION protein_coding - CCDS25782.1 1 200.0 21.0 5.05 34.2 219.1 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000043673 Kcns3 ENSMUST00000055673 ENSMUSP00000060706 TRANSLATION protein_coding - CCDS25813.1 1 491.0 0.0 0.5 18.7 264.2 3.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000043673 Kcns3 ENSMUST00000164495 ENSMUSP00000129412 TRANSLATION protein_coding - CCDS25813.1 1 491.0 0.0 0.5 18.7 264.2 3.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000043673 Kcns3 ENSMUST00000217974 ENSMUSP00000152026 TRANSLATION protein_coding - CCDS25813.1 5 491.0 0.0 0.5 18.7 264.2 3.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000079055 Slc8a3 ENSMUST00000182366 ENSMUSP00000138803 TRANSLATION protein_coding stop - 3 122.0 1.0 1.53 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079055 Slc8a3 ENSMUST00000183102 - NO_TRANSLATION retained_intron ENSMUSG00000079055 Slc8a3 ENSMUST00000182208 ENSMUSP00000138735 TRANSLATION protein_coding - CCDS36485.1 1 928.0 16.0 3.126 18.4 597.9 10.0 2,-3 1.0 3 15.84 MINOR ENSMUSG00000079055 Slc8a3 ENSMUST00000085238 ENSMUSP00000082334 TRANSLATION protein_coding - CCDS49103.1 1 921.0 19.0 3.14 18.4 605.8 10.0 2,-3 0.9706 3 17.868 PRINCIPAL:4 ENSMUSG00000079055 Slc8a3 ENSMUST00000064594 ENSMUSP00000063258 TRANSLATION protein_coding - - 5 927.0 19.0 3.206 18.4 605.8 10.0 2,-3 0.9 3 18.0 ALTERNATIVE:1 ENSMUSG00000021039 Snw1 ENSMUST00000222579 - NO_TRANSLATION retained_intron ENSMUSG00000021039 Snw1 ENSMUST00000223119 - NO_TRANSLATION retained_intron ENSMUSG00000021039 Snw1 ENSMUST00000021428 ENSMUSP00000021428 TRANSLATION protein_coding - CCDS49121.1 1 536.0 0.0 7.9 36.9 251.3 0.0 -4,-5 1.0 22 16.0 PRINCIPAL:1 ENSMUSG00000034435 Tmem30b ENSMUST00000042975 ENSMUSP00000037476 TRANSLATION protein_coding - CCDS25975.1 - 353.0 0.0 1.0 4.8 303.8 0.0 -4,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000035293 G2e3 ENSMUST00000121521 ENSMUSP00000113191 TRANSLATION protein_coding - CCDS49062.1 1 622.0 16.0 4.13 0.0 109.3 0.0 -4,-5 0.1444 - 14.0 ALTERNATIVE:2 ENSMUSG00000035293 G2e3 ENSMUST00000144767 - NO_TRANSLATION retained_intron ENSMUSG00000035293 G2e3 ENSMUST00000119211 ENSMUSP00000113270 TRANSLATION protein_coding - CCDS49061.1 1 739.0 16.0 4.13 0.3 109.8 0.0 -4,-5 0.3002 - 14.0 ALTERNATIVE:2 ENSMUSG00000035293 G2e3 ENSMUST00000054308 ENSMUSP00000054474 TRANSLATION protein_coding - CCDS25900.1 1 716.0 16.0 4.13 0.1 109.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000035293 G2e3 ENSMUST00000152236 - NO_TRANSLATION retained_intron ENSMUSG00000094194 Ighv5-16 ENSMUST00000193652 ENSMUSP00000141639 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.0 0.0 44.1 0.0 4,-1 0.8181 3 -2.0 PRINCIPAL:5 ENSMUSG00000094194 Ighv5-16 ENSMUST00000103458 ENSMUSP00000100239 TRANSLATION IG_V_gene stop - - 116.0 6.0 1.0 0.0 44.1 0.0 3,-2 0.3185 3 -2.0 ALTERNATIVE:2 ENSMUSG00000041550 Serpina5 ENSMUST00000021495 ENSMUSP00000021495 TRANSLATION protein_coding - CCDS26146.1 1 405.0 0.0 4.0 1.2 363.7 0.0 2,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000020600 Slc7a15 ENSMUST00000095863 ENSMUSP00000093548 TRANSLATION protein_coding - CCDS25800.1 1 488.0 0.0 6.08 7.6 69.1 12.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000020600 Slc7a15 ENSMUST00000036938 ENSMUSP00000047873 TRANSLATION protein_coding - CCDS25801.1 1 228.0 0.0 4.75 1.0 24.8 8.0 -2,-3 0.0218 - 5.496 MINOR ENSMUSG00000020600 Slc7a15 ENSMUST00000129465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020600 Slc7a15 ENSMUST00000165657 ENSMUSP00000129806 TRANSLATION protein_coding - CCDS25801.1 1 228.0 0.0 4.75 1.0 24.8 8.0 -2,-3 0.0218 - 5.496 MINOR ENSMUSG00000094561 Ighv1-22 ENSMUST00000103507 ENSMUSP00000100288 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 1.0 58.7 0.0 3,-2 0.8338 1 -2.0 PRINCIPAL:1 ENSMUSG00000021070 Bdkrb2 ENSMUST00000001652 ENSMUSP00000001652 TRANSLATION protein_coding - CCDS49160.1 1 392.0 0.0 1.0 1.5 184.6 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000062198 2700097O09Rik ENSMUST00000156852 - NO_TRANSLATION retained_intron ENSMUSG00000062198 2700097O09Rik ENSMUST00000222572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062198 2700097O09Rik ENSMUST00000136281 - NO_TRANSLATION retained_intron ENSMUSG00000062198 2700097O09Rik ENSMUST00000021406 ENSMUSP00000021406 TRANSLATION protein_coding - CCDS25912.1 1 301.0 16.0 6.93 21.6 0.0 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000021055 Esr2 ENSMUST00000101291 ENSMUSP00000098849 TRANSLATION protein_coding - - 1 548.0 30.0 6.75 0.0 409.8 0.0 -4,-5 0.2222 - 12.998 MINOR ENSMUSG00000021055 Esr2 ENSMUST00000076634 ENSMUSP00000075932 TRANSLATION protein_coding - CCDS25987.1 1 549.0 30.0 7.25 4.8 410.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:2 ENSMUSG00000021055 Esr2 ENSMUST00000218621 ENSMUSP00000151463 TRANSLATION protein_coding - CCDS25988.1 1 567.0 30.0 6.75 1.1 409.8 0.0 -4,-5 0.211 - 13.05 MINOR ENSMUSG00000021055 Esr2 ENSMUST00000133564 ENSMUSP00000138637 TRANSLATION nonsense_mediated_decay - - 1 343.0 16.0 3.0 0.0 288.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021055 Esr2 ENSMUST00000110421 ENSMUSP00000106051 TRANSLATION protein_coding - - 1 530.0 30.0 7.25 4.2 410.7 0.0 -4,-5 0.6582 - 15.684 ALTERNATIVE:2 ENSMUSG00000020571 Pdia6 ENSMUST00000057288 ENSMUSP00000052912 TRANSLATION protein_coding - - 1 440.0 8.0 7.15 17.8 209.3 0.0 3,-2 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000020571 Pdia6 ENSMUST00000161853 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020571 Pdia6 ENSMUST00000239402 ENSMUSP00000159304 TRANSLATION protein_coding - CCDS25826.1 - 445.0 8.0 7.15 4.4 209.3 0.0 2,-3 0.5752 15 18.808 MINOR ENSMUSG00000020571 Pdia6 ENSMUST00000159434 - NO_TRANSLATION retained_intron ENSMUSG00000020571 Pdia6 ENSMUST00000162936 - NO_TRANSLATION retained_intron ENSMUSG00000020571 Pdia6 ENSMUST00000163000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021245 Mlh3 ENSMUST00000220854 ENSMUSP00000152840 TRANSLATION protein_coding - - 5 1443.0 12.0 0.27 0.0 115.7 0.0 -4,-6 0.3599 - 9.24 ALTERNATIVE:2 ENSMUSG00000021245 Mlh3 ENSMUST00000166821 ENSMUSP00000129900 TRANSLATION protein_coding - CCDS36497.1 1 1411.0 12.0 0.27 0.0 115.7 0.0 -4,-6 1.0 - 9.24 PRINCIPAL:2 ENSMUSG00000021245 Mlh3 ENSMUST00000019378 ENSMUSP00000019378 TRANSLATION protein_coding - CCDS36497.1 1 1411.0 12.0 0.27 0.0 115.7 0.0 -4,-6 1.0 - 9.24 PRINCIPAL:2 ENSMUSG00000021245 Mlh3 ENSMUST00000223230 ENSMUSP00000152686 TRANSLATION nonsense_mediated_decay start - 1 197.0 0.0 0.5 0.0 24.8 0.0 -4,-7 0.0478 - -2.0 MINOR ENSMUSG00000021245 Mlh3 ENSMUST00000223005 - NO_TRANSLATION retained_intron ENSMUSG00000020608 Smc6 ENSMUST00000218319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020608 Smc6 ENSMUST00000218958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020608 Smc6 ENSMUST00000219776 ENSMUSP00000152041 TRANSLATION nonsense_mediated_decay - - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020608 Smc6 ENSMUST00000217906 ENSMUSP00000151382 TRANSLATION nonsense_mediated_decay - - 3 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020608 Smc6 ENSMUST00000218866 ENSMUSP00000151976 TRANSLATION protein_coding - - 1 326.0 9.0 2.23545 0.0 58.9 0.0 -4,-5 0.0086 5 13.884 MINOR ENSMUSG00000020608 Smc6 ENSMUST00000220289 - NO_TRANSLATION retained_intron ENSMUSG00000020608 Smc6 ENSMUST00000020931 ENSMUSP00000020931 TRANSLATION protein_coding - CCDS25815.1 1 1097.0 9.0 4.29295 13.1 57.2 0.0 -4,-5 1.0 13 21.826 PRINCIPAL:1 ENSMUSG00000020608 Smc6 ENSMUST00000217930 ENSMUSP00000151232 TRANSLATION protein_coding start - 5 100.0 0.0 0.549 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020608 Smc6 ENSMUST00000219041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020608 Smc6 ENSMUST00000217991 ENSMUSP00000151378 TRANSLATION protein_coding start/stop - 3 179.0 0.0 0.85 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020608 Smc6 ENSMUST00000218022 ENSMUSP00000151643 TRANSLATION nonsense_mediated_decay - - 1 91.0 2.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020608 Smc6 ENSMUST00000218815 ENSMUSP00000151435 TRANSLATION protein_coding start - 3 103.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000094103 Fam177a2 ENSMUST00000177978 ENSMUSP00000137377 TRANSLATION protein_coding - CCDS49066.1 1 207.0 0.0 1.3 2.9 154.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000079014 Serpina3i ENSMUST00000109960 - NO_TRANSLATION retained_intron ENSMUSG00000079014 Serpina3i ENSMUST00000109958 ENSMUSP00000105584 TRANSLATION protein_coding - CCDS49157.1 5 408.0 0.0 4.0 0.1 392.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000005078 Jkamp ENSMUST00000057257 ENSMUSP00000061370 TRANSLATION protein_coding - CCDS25967.1 1 311.0 0.0 0.0 30.0 382.4 9.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000005078 Jkamp ENSMUST00000125764 ENSMUSP00000117251 TRANSLATION protein_coding stop - 5 214.0 0.0 0.0 5.3 279.4 6.0 -4,-7 0.1022 - -2.0 MINOR ENSMUSG00000005078 Jkamp ENSMUST00000134041 - NO_TRANSLATION retained_intron ENSMUSG00000005078 Jkamp ENSMUST00000145752 - NO_TRANSLATION retained_intron ENSMUSG00000005078 Jkamp ENSMUST00000152381 - NO_TRANSLATION retained_intron ENSMUSG00000005078 Jkamp ENSMUST00000117449 ENSMUSP00000113744 TRANSLATION protein_coding - CCDS56844.1 1 305.0 0.0 0.0 13.8 382.4 9.0 -4,-7 0.7869 - 7.764 MINOR ENSMUSG00000005078 Jkamp ENSMUST00000132371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076680 Ighv6-6 ENSMUST00000103489 ENSMUSP00000100270 TRANSLATION IG_V_gene stop - - 119.0 6.0 1.0 0.0 53.6 0.0 2,-2 0.8288 2 -2.0 PRINCIPAL:1 ENSMUSG00000090843 Heatr4 ENSMUST00000164935 ENSMUSP00000129832 TRANSLATION protein_coding - - 5 955.0 0.0 0.944 0.0 29.2 0.0 -4,-7 0.8672 - 12.0 PRINCIPAL:1 ENSMUSG00000076613 Ighg2b ENSMUST00000103418 ENSMUSP00000100214 TRANSLATION IG_C_gene start - - 336.0 6.0 3.15 0.0 218.3 0.0 -4,-6 0.0522 11 -2.0 ALTERNATIVE:2 ENSMUSG00000076613 Ighg2b ENSMUST00000192188 ENSMUSP00000141198 TRANSLATION IG_C_gene start - - 405.0 6.0 3.15 0.0 218.3 0.0 -4,-6 0.7607 11 -2.0 PRINCIPAL:5 ENSMUSG00000094057 Ighd2-7 ENSMUST00000177965 ENSMUSP00000141374 TRANSLATION IG_D_gene start/stop - - 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021061 Sptb ENSMUST00000021458 ENSMUSP00000021458 TRANSLATION protein_coding - CCDS36477.1 1 2329.0 0.0 23.785 9.2 1257.8 0.0 -4,-5 1.0 96 15.0 PRINCIPAL:1 ENSMUSG00000021061 Sptb ENSMUST00000170532 - NO_TRANSLATION retained_intron ENSMUSG00000021061 Sptb ENSMUST00000166101 ENSMUSP00000129782 TRANSLATION protein_coding - - 5 2137.0 0.0 22.085 2.2 1197.7 0.0 -4,-5 0.2512 88 5.43 MINOR ENSMUSG00000020646 Mboat2 ENSMUST00000078902 ENSMUSP00000077937 TRANSLATION protein_coding - - 5 386.0 0.0 5.13 4.6 110.9 4.0 -4,-5 0.4048 8 9.942 MINOR ENSMUSG00000020646 Mboat2 ENSMUST00000222994 ENSMUSP00000152712 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.375 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020646 Mboat2 ENSMUST00000221952 ENSMUSP00000152348 TRANSLATION protein_coding - CCDS36423.1 1 487.0 0.0 6.36 0.4 107.8 7.0 -4,-5 0.1865 8 11.016 MINOR ENSMUSG00000020646 Mboat2 ENSMUST00000110942 ENSMUSP00000106567 TRANSLATION protein_coding - CCDS25845.1 1 519.0 0.0 6.76 10.0 104.1 7.0 -4,-5 1.0 8 14.592 PRINCIPAL:1 ENSMUSG00000020646 Mboat2 ENSMUST00000222198 ENSMUSP00000152150 TRANSLATION protein_coding stop - 5 129.0 0.0 1.255 0.0 0.0 3.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000020646 Mboat2 ENSMUST00000220497 - NO_TRANSLATION retained_intron ENSMUSG00000042724 Map3k9 ENSMUST00000223292 - NO_TRANSLATION retained_intron ENSMUSG00000042724 Map3k9 ENSMUST00000222322 ENSMUSP00000152201 TRANSLATION protein_coding - - 5 1100.0 19.0 4.12 0.4 266.5 0.0 -2,-4 0.3921 5 14.0 ALTERNATIVE:2 ENSMUSG00000042724 Map3k9 ENSMUST00000035987 ENSMUSP00000041819 TRANSLATION protein_coding - CCDS49104.1 1 1077.0 19.0 4.12 2.3 266.5 0.0 -2,-4 1.0 5 15.0 PRINCIPAL:2 ENSMUSG00000076695 Ighv1-18 ENSMUST00000194350 ENSMUSP00000142064 TRANSLATION IG_V_gene stop - - 117.0 5.0 1.25 1.0 52.8 0.0 3,-2 0.8298 3 -2.0 PRINCIPAL:1 ENSMUSG00000021280 Exoc3l4 ENSMUST00000220537 ENSMUSP00000152091 TRANSLATION protein_coding stop - 2 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021280 Exoc3l4 ENSMUST00000220636 - NO_TRANSLATION retained_intron ENSMUSG00000021280 Exoc3l4 ENSMUST00000221144 ENSMUSP00000152063 TRANSLATION protein_coding stop - 3 88.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021280 Exoc3l4 ENSMUST00000220852 ENSMUSP00000152326 TRANSLATION protein_coding stop - 3 177.0 0.0 0.075 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000021280 Exoc3l4 ENSMUST00000222437 ENSMUSP00000152094 TRANSLATION protein_coding stop - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021280 Exoc3l4 ENSMUST00000223431 ENSMUSP00000152629 TRANSLATION protein_coding stop - 2 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021280 Exoc3l4 ENSMUST00000072646 ENSMUSP00000072438 TRANSLATION protein_coding - CCDS26177.1 1 721.0 0.0 3.71 2.4 359.7 0.0 -4,-6 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000021280 Exoc3l4 ENSMUST00000222262 - NO_TRANSLATION retained_intron ENSMUSG00000021280 Exoc3l4 ENSMUST00000222897 ENSMUSP00000152844 TRANSLATION protein_coding - CCDS26177.1 1 721.0 0.0 3.71 2.4 359.7 0.0 -4,-6 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000021280 Exoc3l4 ENSMUST00000222126 - NO_TRANSLATION retained_intron ENSMUSG00000021280 Exoc3l4 ENSMUST00000223369 - NO_TRANSLATION retained_intron ENSMUSG00000021280 Exoc3l4 ENSMUST00000223050 ENSMUSP00000152337 TRANSLATION protein_coding - CCDS26177.1 1 721.0 0.0 3.71 2.4 359.7 0.0 -4,-6 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000054459 Vsnl1 ENSMUST00000072299 ENSMUSP00000072145 TRANSLATION protein_coding - CCDS25816.1 1 191.0 20.0 3.0 36.9 90.0 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000054459 Vsnl1 ENSMUST00000220506 ENSMUSP00000152711 TRANSLATION protein_coding - CCDS25816.1 5 191.0 20.0 3.0 36.9 90.0 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000034168 Irf2bpl ENSMUST00000038422 ENSMUSP00000041070 TRANSLATION protein_coding - CCDS26068.1 - 775.0 8.0 0.0 2.2 119.9 0.0 -4,-2 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000046157 Tmem229b ENSMUST00000174721 ENSMUSP00000134605 TRANSLATION protein_coding stop - 3 102.0 0.0 1.0 0.0 0.0 4.0 -4,-7 0.0247 - -2.0 MINOR ENSMUSG00000046157 Tmem229b ENSMUST00000174072 ENSMUSP00000134376 TRANSLATION protein_coding - CCDS26005.1 1 167.0 0.0 2.0 9.8 0.0 5.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000046157 Tmem229b ENSMUST00000174344 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046157 Tmem229b ENSMUST00000174697 ENSMUSP00000134348 TRANSLATION protein_coding - CCDS26005.1 5 167.0 0.0 2.0 9.8 0.0 5.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000046157 Tmem229b ENSMUST00000070174 ENSMUSP00000070637 TRANSLATION protein_coding - CCDS26005.1 1 167.0 0.0 2.0 9.8 0.0 5.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000046157 Tmem229b ENSMUST00000056660 ENSMUSP00000053835 TRANSLATION protein_coding - CCDS26005.1 1 167.0 0.0 2.0 9.8 0.0 5.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000046157 Tmem229b ENSMUST00000173095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093818 Ighd3-1 ENSMUST00000180266 ENSMUSP00000141755 TRANSLATION IG_D_gene start/stop - - 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000043398 Gpr135 ENSMUST00000050649 ENSMUSP00000058762 TRANSLATION protein_coding - CCDS25965.1 - 457.0 0.0 0.2 0.4 142.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057469 E2f6 ENSMUST00000222582 - NO_TRANSLATION retained_intron ENSMUSG00000057469 E2f6 ENSMUST00000221541 ENSMUSP00000152314 TRANSLATION nonsense_mediated_decay - - 1 46.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000057469 E2f6 ENSMUST00000221600 - NO_TRANSLATION retained_intron ENSMUSG00000057469 E2f6 ENSMUST00000220707 - NO_TRANSLATION retained_intron ENSMUSG00000057469 E2f6 ENSMUST00000020908 ENSMUSP00000020908 TRANSLATION protein_coding - CCDS36409.1 1 272.0 0.0 2.5 0.4 190.9 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057469 E2f6 ENSMUST00000220794 ENSMUSP00000152576 TRANSLATION nonsense_mediated_decay - - 1 51.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000057469 E2f6 ENSMUST00000221934 ENSMUSP00000152882 TRANSLATION nonsense_mediated_decay - - 5 63.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021242 Npc2 ENSMUST00000223200 - NO_TRANSLATION retained_intron ENSMUSG00000021242 Npc2 ENSMUST00000221056 - NO_TRANSLATION retained_intron ENSMUSG00000021242 Npc2 ENSMUST00000021668 ENSMUSP00000021668 TRANSLATION protein_coding - CCDS26050.1 1 149.0 0.0 3.125 19.5 105.4 0.0 4,-1 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000095210 Ighv5-9-1 ENSMUST00000192264 ENSMUSP00000141243 TRANSLATION IG_V_gene stop - - 126.0 3.0 1.0 0.0 51.7 0.0 2,-2 0.8342 2 -2.0 PRINCIPAL:1 ENSMUSG00000002688 Prkd1 ENSMUST00000002765 ENSMUSP00000002765 TRANSLATION protein_coding - CCDS49059.1 1 918.0 17.0 8.93 6.9 377.1 0.0 -1,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000094029 Ighv3-3 ENSMUST00000191693 ENSMUSP00000141593 TRANSLATION IG_V_gene stop - - 116.0 3.0 1.0 0.0 51.4 0.0 3,-2 0.8311 1 -2.0 PRINCIPAL:5 ENSMUSG00000094029 Ighv3-3 ENSMUST00000103476 ENSMUSP00000100257 TRANSLATION IG_V_gene start/stop - - 98.0 3.0 1.0 0.0 51.4 0.0 -4,-5 0.0592 1 -2.0 ALTERNATIVE:2 ENSMUSG00000118552 Rplp2-ps1 ENSMUST00000238938 ENSMUSP00000158993 TRANSLATION protein_coding - - - 115.0 0.0 1.0 29.2 89.8 0.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000094787 Ighv1-54 ENSMUST00000103525 ENSMUSP00000100306 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 54.1 0.0 4,-1 0.8349 2 -2.0 PRINCIPAL:1 ENSMUSG00000021290 Atp5mj ENSMUST00000021719 ENSMUSP00000021719 TRANSLATION protein_coding - CCDS36566.1 1 58.0 0.0 1.66 12.5 116.3 1.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000021290 Atp5mj ENSMUST00000223435 - NO_TRANSLATION retained_intron ENSMUSG00000021290 Atp5mj ENSMUST00000222405 - NO_TRANSLATION retained_intron ENSMUSG00000021290 Atp5mj ENSMUST00000222874 ENSMUSP00000152618 TRANSLATION protein_coding - CCDS36566.1 2 58.0 0.0 1.66 12.5 116.3 1.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000021290 Atp5mj ENSMUST00000223191 ENSMUSP00000152566 TRANSLATION protein_coding stop - 2 57.0 0.0 1.66 12.5 112.6 1.0 -4,-7 0.7851 1 -2.0 MINOR ENSMUSG00000094940 Ighv1-84 ENSMUST00000103551 ENSMUSP00000100332 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 58.5 0.0 3,-2 0.8326 - -2.0 PRINCIPAL:1 ENSMUSG00000002799 Jag2 ENSMUST00000223140 ENSMUSP00000152342 TRANSLATION protein_coding start/stop - 3 247.0 15.0 3.704 0.0 159.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002799 Jag2 ENSMUST00000075827 ENSMUSP00000075224 TRANSLATION protein_coding - CCDS26200.1 1 1247.0 26.0 15.452 3.5 558.3 0.0 3,-4 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000002799 Jag2 ENSMUST00000221320 - NO_TRANSLATION retained_intron ENSMUSG00000002799 Jag2 ENSMUST00000222402 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002799 Jag2 ENSMUST00000221696 - NO_TRANSLATION retained_intron ENSMUSG00000002799 Jag2 ENSMUST00000220855 - NO_TRANSLATION retained_intron ENSMUSG00000002799 Jag2 ENSMUST00000223304 - NO_TRANSLATION retained_intron ENSMUSG00000002799 Jag2 ENSMUST00000220771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002799 Jag2 ENSMUST00000221454 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002799 Jag2 ENSMUST00000221647 - NO_TRANSLATION retained_intron ENSMUSG00000033530 Ttc7b ENSMUST00000223110 ENSMUSP00000152637 TRANSLATION protein_coding start - 5 329.0 0.0 2.7 0.0 45.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000033530 Ttc7b ENSMUST00000223020 ENSMUSP00000152299 TRANSLATION protein_coding - - 5 860.0 0.0 13.03 16.4 106.9 0.0 -4,-6 0.7951 19 10.408 ALTERNATIVE:1 ENSMUSG00000033530 Ttc7b ENSMUST00000222036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033530 Ttc7b ENSMUST00000221975 - NO_TRANSLATION retained_intron ENSMUSG00000033530 Ttc7b ENSMUST00000062957 ENSMUSP00000052107 TRANSLATION protein_coding - CCDS49141.1 1 843.0 0.0 12.68 26.6 106.9 0.0 -4,-6 1.0 20 11.298 PRINCIPAL:3 ENSMUSG00000033530 Ttc7b ENSMUST00000220480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033530 Ttc7b ENSMUST00000220614 - NO_TRANSLATION retained_intron ENSMUSG00000033530 Ttc7b ENSMUST00000223444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033530 Ttc7b ENSMUST00000223514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033530 Ttc7b ENSMUST00000223255 - NO_TRANSLATION retained_intron ENSMUSG00000096672 Ighv1-63 ENSMUST00000103534 ENSMUSP00000100315 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 56.3 0.0 4,-1 0.8343 - -2.0 PRINCIPAL:1 ENSMUSG00000041886 Macc1 ENSMUST00000222784 ENSMUSP00000152677 TRANSLATION protein_coding - CCDS49199.1 5 851.0 0.0 0.0 7.8 57.8 0.0 -4,-6 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000041886 Macc1 ENSMUST00000048880 ENSMUSP00000042955 TRANSLATION protein_coding - CCDS49199.1 5 851.0 0.0 0.0 7.8 57.8 0.0 -4,-6 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000041886 Macc1 ENSMUST00000221866 ENSMUSP00000152883 TRANSLATION protein_coding - CCDS49199.1 5 851.0 0.0 0.0 7.8 57.8 0.0 -4,-6 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000041886 Macc1 ENSMUST00000221917 ENSMUSP00000152808 TRANSLATION protein_coding - CCDS49199.1 5 851.0 0.0 0.0 7.8 57.8 0.0 -4,-6 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000041886 Macc1 ENSMUST00000222058 ENSMUSP00000152123 TRANSLATION protein_coding - CCDS49199.1 5 851.0 0.0 0.0 7.8 57.8 0.0 -4,-6 1.0 6 8.0 PRINCIPAL:1 ENSMUSG00000113902 Ndufb1 ENSMUST00000221191 ENSMUSP00000159028 TRANSLATION protein_coding - - 2 57.0 0.0 1.33 21.6 114.0 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000113902 Ndufb1 ENSMUST00000222608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000113902 Ndufb1 ENSMUST00000221422 ENSMUSP00000159138 TRANSLATION protein_coding - - 1 57.0 0.0 1.33 21.6 114.0 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000113902 Ndufb1 ENSMUST00000221227 ENSMUSP00000158975 TRANSLATION protein_coding - - 3 57.0 0.0 1.33 21.6 114.0 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000064326 Siva1 ENSMUST00000222353 - NO_TRANSLATION retained_intron ENSMUSG00000064326 Siva1 ENSMUST00000222729 - NO_TRANSLATION retained_intron ENSMUSG00000064326 Siva1 ENSMUST00000021728 ENSMUSP00000021728 TRANSLATION protein_coding - CCDS26193.1 1 175.0 3.0 0.0 7.1 288.3 0.0 -4,-6 1.0 1 11.0 PRINCIPAL:1 ENSMUSG00000064326 Siva1 ENSMUST00000109755 ENSMUSP00000105377 TRANSLATION protein_coding - CCDS49189.1 1 110.0 3.0 0.0 1.0 167.0 0.0 -4,-5 0.0578 - 3.0 MINOR ENSMUSG00000064326 Siva1 ENSMUST00000222368 - NO_TRANSLATION retained_intron ENSMUSG00000021176 Efcab11 ENSMUST00000220875 ENSMUSP00000152256 TRANSLATION nonsense_mediated_decay start - 3 36.0 6.0 1.0 0.0 15.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021176 Efcab11 ENSMUST00000221929 ENSMUSP00000152099 TRANSLATION protein_coding start - 1 163.0 6.0 4.035 0.0 33.6 0.0 -3,-6 0.0363 - -2.0 MINOR ENSMUSG00000021176 Efcab11 ENSMUST00000221197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021176 Efcab11 ENSMUST00000221801 - NO_TRANSLATION retained_intron ENSMUSG00000021176 Efcab11 ENSMUST00000046485 ENSMUSP00000044808 TRANSLATION protein_coding - CCDS26104.1 1 162.0 11.0 4.785 9.6 59.4 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000021176 Efcab11 ENSMUST00000223108 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021176 Efcab11 ENSMUST00000223114 ENSMUSP00000152734 TRANSLATION protein_coding - CCDS26104.1 5 162.0 11.0 4.785 9.6 59.4 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000079017 Ifi27l2a ENSMUST00000055071 ENSMUSP00000054698 TRANSLATION protein_coding - CCDS49153.1 1 90.0 0.0 1.6 0.9 96.3 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021028 Mbip ENSMUST00000218118 ENSMUSP00000151594 TRANSLATION nonsense_mediated_decay - - 2 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.011 - -2.0 MINOR ENSMUSG00000021028 Mbip ENSMUST00000218321 - NO_TRANSLATION retained_intron ENSMUSG00000021028 Mbip ENSMUST00000021416 ENSMUSP00000021416 TRANSLATION protein_coding - CCDS25920.1 1 341.0 0.0 0.0 12.5 0.0 0.0 -4,-5 1.0 3 3.0 PRINCIPAL:1 ENSMUSG00000094075 Ighv1-80 ENSMUST00000103547 ENSMUSP00000100328 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 57.6 0.0 3,-2 0.8326 - -2.0 PRINCIPAL:1 ENSMUSG00000020658 Efr3b ENSMUST00000219331 ENSMUSP00000151581 TRANSLATION nonsense_mediated_decay start - 3 86.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.015 1 -2.0 MINOR ENSMUSG00000020658 Efr3b ENSMUST00000217677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020658 Efr3b ENSMUST00000218545 - NO_TRANSLATION retained_intron ENSMUSG00000020658 Efr3b ENSMUST00000219797 - NO_TRANSLATION retained_intron ENSMUSG00000020658 Efr3b ENSMUST00000218166 ENSMUSP00000151788 TRANSLATION protein_coding start - 1 657.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0397 16 -2.0 MINOR ENSMUSG00000020658 Efr3b ENSMUST00000111178 ENSMUSP00000106809 TRANSLATION protein_coding - CCDS49016.1 1 817.0 0.0 1.12 27.9 0.0 0.0 -4,-6 1.0 19 10.0 PRINCIPAL:1 ENSMUSG00000021186 Fbln5 ENSMUST00000222587 ENSMUSP00000152680 TRANSLATION protein_coding - - 5 461.0 38.0 7.4 5.8 183.1 0.0 0,-4 0.6994 11 19.308 MINOR ENSMUSG00000021186 Fbln5 ENSMUST00000221373 - NO_TRANSLATION retained_intron ENSMUSG00000021186 Fbln5 ENSMUST00000021603 ENSMUSP00000021603 TRANSLATION protein_coding - CCDS36525.1 1 448.0 38.0 7.4 12.0 183.1 0.0 4,-1 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000054309 Cpsf3 ENSMUST00000222883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054309 Cpsf3 ENSMUST00000221042 ENSMUSP00000152222 TRANSLATION nonsense_mediated_decay start - 1 241.0 6.0 6.1 0.0 82.1 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000054309 Cpsf3 ENSMUST00000221145 ENSMUSP00000152325 TRANSLATION protein_coding stop - 5 247.0 6.0 6.58 0.0 71.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000054309 Cpsf3 ENSMUST00000220940 - NO_TRANSLATION retained_intron ENSMUSG00000054309 Cpsf3 ENSMUST00000221992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054309 Cpsf3 ENSMUST00000067284 ENSMUSP00000068148 TRANSLATION protein_coding - CCDS25834.1 1 684.0 8.0 15.91 10.6 445.9 0.0 -4,-5 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000054309 Cpsf3 ENSMUST00000220665 - NO_TRANSLATION retained_intron ENSMUSG00000054309 Cpsf3 ENSMUST00000222474 ENSMUSP00000152447 TRANSLATION protein_coding stop - 3 28.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054309 Cpsf3 ENSMUST00000222968 ENSMUSP00000152703 TRANSLATION protein_coding - - 1 512.0 8.0 12.061 0.0 263.3 0.0 -4,-5 0.0013 13 6.0 MINOR ENSMUSG00000054309 Cpsf3 ENSMUST00000221507 ENSMUSP00000152651 TRANSLATION protein_coding stop - 3 156.0 4.0 3.58 0.0 52.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000054309 Cpsf3 ENSMUST00000221711 ENSMUSP00000152601 TRANSLATION protein_coding stop - 3 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062929 Cfl2 ENSMUST00000223095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062929 Cfl2 ENSMUST00000221374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062929 Cfl2 ENSMUST00000223320 - NO_TRANSLATION retained_intron ENSMUSG00000062929 Cfl2 ENSMUST00000223450 ENSMUSP00000152320 TRANSLATION nonsense_mediated_decay - - 2 58.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000062929 Cfl2 ENSMUST00000078124 ENSMUSP00000077262 TRANSLATION protein_coding - CCDS36448.1 1 166.0 0.0 3.75 34.9 103.5 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000062929 Cfl2 ENSMUST00000221088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021056 Tex21 ENSMUST00000218426 ENSMUSP00000151515 TRANSLATION protein_coding - - 1 527.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.6096 - 0.0 PRINCIPAL:2 ENSMUSG00000021056 Tex21 ENSMUST00000021453 ENSMUSP00000021453 TRANSLATION protein_coding - CCDS25989.1 1 575.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2733 - 0.0 ALTERNATIVE:2 ENSMUSG00000021056 Tex21 ENSMUST00000220068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021056 Tex21 ENSMUST00000219327 ENSMUSP00000151892 TRANSLATION protein_coding stop - 3 157.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0308 - -2.0 MINOR ENSMUSG00000057963 Itpk1 ENSMUST00000179210 ENSMUSP00000136931 TRANSLATION protein_coding stop - 3 21.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057963 Itpk1 ENSMUST00000179417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057963 Itpk1 ENSMUST00000046518 ENSMUSP00000046027 TRANSLATION protein_coding - CCDS26121.1 1 419.0 21.0 8.06 7.8 463.1 0.0 -4,-7 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000057963 Itpk1 ENSMUST00000191320 ENSMUSP00000139394 TRANSLATION protein_coding stop - 5 44.0 2.0 1.33 0.0 40.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057963 Itpk1 ENSMUST00000178697 ENSMUSP00000137275 TRANSLATION protein_coding stop - 5 85.0 0.0 1.08 0.0 45.3 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000042540 Acot5 ENSMUST00000072505 ENSMUSP00000072322 TRANSLATION protein_coding - CCDS83986.1 1 331.0 1.0 3.0 0.0 245.5 0.0 -4,-5 0.0014 1 0.999 MINOR ENSMUSG00000042540 Acot5 ENSMUST00000046422 ENSMUSP00000042019 TRANSLATION protein_coding - CCDS26037.1 1 421.0 3.0 6.0 10.3 428.1 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000079029 Eif1ad7 ENSMUST00000101168 ENSMUSP00000098728 TRANSLATION protein_coding - CCDS49133.1 1 144.0 0.0 1.0 3.7 71.1 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000097929 Tunar ENSMUST00000222718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000097929 Tunar ENSMUST00000180503 ENSMUSP00000147289 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 1.0 0.0 0.0 1.0 -4,-6 0.6701 - -2.0 MINOR ENSMUSG00000097929 Tunar ENSMUST00000180458 ENSMUSP00000147361 TRANSLATION protein_coding - - 1 48.0 0.0 1.0 0.0 0.0 1.0 -4,-6 0.6701 - 6.0 PRINCIPAL:1 ENSMUSG00000034290 Nek9 ENSMUST00000040992 ENSMUSP00000049056 TRANSLATION protein_coding - CCDS26057.1 1 984.0 16.0 7.79 6.9 347.4 0.0 -4,-5 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000020648 Dus4l ENSMUST00000020977 ENSMUSP00000020977 TRANSLATION protein_coding - CCDS25865.1 1 324.0 18.0 6.0 0.0 245.5 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000020648 Dus4l ENSMUST00000219855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020648 Dus4l ENSMUST00000219098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021054 Sgpp1 ENSMUST00000220285 ENSMUSP00000151268 TRANSLATION protein_coding - - 1 268.0 3.0 0.4 0.0 37.0 4.0 -4,0 0.0509 2 13.086 MINOR ENSMUSG00000021054 Sgpp1 ENSMUST00000021450 ENSMUSP00000021450 TRANSLATION protein_coding - CCDS25986.1 1 430.0 4.0 0.4 0.4 54.3 6.0 -4,0 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000087642 Ighe ENSMUST00000137336 ENSMUSP00000118012 TRANSLATION IG_C_gene start - - 422.0 6.0 2.4 0.0 216.8 0.0 -4,-6 0.0492 3 -2.0 PRINCIPAL:3 ENSMUSG00000087642 Ighe ENSMUST00000223335 ENSMUSP00000152628 TRANSLATION IG_C_gene start - - 486.0 6.0 2.4 0.0 216.8 0.0 -4,-6 0.7553 2 -2.0 ALTERNATIVE:2 ENSMUSG00000095565 Ighv2-9-1 ENSMUST00000180013 ENSMUSP00000136606 TRANSLATION IG_V_gene stop - - 116.0 6.0 1.0 0.0 52.8 0.0 3,-2 0.8258 1 -2.0 PRINCIPAL:1 ENSMUSG00000059114 Lrrc74a ENSMUST00000223308 ENSMUSP00000152661 TRANSLATION protein_coding - - 5 494.0 0.0 7.8 0.0 103.6 0.0 -4,-5 0.7591 1 8.0 PRINCIPAL:2 ENSMUSG00000059114 Lrrc74a ENSMUST00000222180 ENSMUSP00000152776 TRANSLATION nonsense_mediated_decay - - 5 139.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059114 Lrrc74a ENSMUST00000095527 ENSMUSP00000093183 TRANSLATION protein_coding - CCDS56848.1 5 487.0 0.0 7.8 0.0 103.6 0.0 -4,-5 0.5065 1 8.0 ALTERNATIVE:2 ENSMUSG00000059114 Lrrc74a ENSMUST00000223197 ENSMUSP00000152674 TRANSLATION nonsense_mediated_decay start - 3 66.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020594 Pum2 ENSMUST00000171608 - NO_TRANSLATION retained_intron ENSMUSG00000020594 Pum2 ENSMUST00000171418 ENSMUSP00000126616 TRANSLATION protein_coding start/stop - 3 235.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000020594 Pum2 ENSMUST00000165293 ENSMUSP00000132170 TRANSLATION nonsense_mediated_decay - - 1 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020594 Pum2 ENSMUST00000169750 ENSMUSP00000126876 TRANSLATION protein_coding stop - 5 262.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 6 -2.0 MINOR ENSMUSG00000020594 Pum2 ENSMUST00000111122 ENSMUSP00000106751 TRANSLATION protein_coding - CCDS49025.1 1 1064.0 0.0 7.8 10.3 243.0 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:3 ENSMUSG00000020594 Pum2 ENSMUST00000166965 ENSMUSP00000130320 TRANSLATION protein_coding stop - 3 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020594 Pum2 ENSMUST00000169089 ENSMUSP00000132122 TRANSLATION protein_coding - CCDS49026.1 5 985.0 0.0 7.8 10.3 243.0 0.0 -4,-5 0.9192 12 11.0 ALTERNATIVE:1 ENSMUSG00000020594 Pum2 ENSMUST00000163730 ENSMUSP00000131914 TRANSLATION protein_coding stop - 5 185.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000020594 Pum2 ENSMUST00000178015 ENSMUSP00000137020 TRANSLATION protein_coding - CCDS49026.1 5 985.0 0.0 7.8 10.3 243.0 0.0 -4,-5 0.9192 12 11.0 ALTERNATIVE:1 ENSMUSG00000020594 Pum2 ENSMUST00000169177 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020594 Pum2 ENSMUST00000111123 ENSMUSP00000106752 TRANSLATION protein_coding - CCDS49025.1 1 1064.0 0.0 7.8 10.3 243.0 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:3 ENSMUSG00000020594 Pum2 ENSMUST00000168361 ENSMUSP00000128292 TRANSLATION protein_coding - CCDS25802.1 5 1066.0 0.0 7.8 10.3 241.2 0.0 -4,-5 0.9913 13 10.8 ALTERNATIVE:1 ENSMUSG00000020594 Pum2 ENSMUST00000163569 ENSMUSP00000131074 TRANSLATION protein_coding - CCDS25802.1 1 1066.0 0.0 7.8 10.3 241.2 0.0 -4,-5 0.9913 13 10.8 ALTERNATIVE:1 ENSMUSG00000020594 Pum2 ENSMUST00000164818 ENSMUSP00000129243 TRANSLATION protein_coding start/stop - 5 222.0 0.0 3.8 0.0 134.5 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000020594 Pum2 ENSMUST00000020915 ENSMUSP00000020915 TRANSLATION protein_coding - CCDS79105.1 1 980.0 0.0 7.8 7.0 243.0 0.0 -4,-5 0.8051 12 9.935 ALTERNATIVE:1 ENSMUSG00000020594 Pum2 ENSMUST00000170037 ENSMUSP00000127786 TRANSLATION nonsense_mediated_decay - - 5 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000096108 Ighv11-2 ENSMUST00000103468 ENSMUSP00000100249 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 0.0 50.3 0.0 2,-2 0.8342 - -2.0 PRINCIPAL:1 ENSMUSG00000020601 Trib2 ENSMUST00000151100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020601 Trib2 ENSMUST00000020922 ENSMUSP00000020922 TRANSLATION protein_coding - CCDS25821.1 1 343.0 0.0 3.93 27.9 121.6 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020601 Trib2 ENSMUST00000221215 ENSMUSP00000152685 TRANSLATION protein_coding stop - 5 122.0 0.0 0.93 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000020601 Trib2 ENSMUST00000221518 ENSMUSP00000152535 TRANSLATION protein_coding - - 5 207.0 0.0 2.0 6.8 109.2 0.0 -4,-7 0.1741 - 8.262 MINOR ENSMUSG00000021023 Prorp ENSMUST00000184766 ENSMUSP00000139204 TRANSLATION protein_coding - CCDS49068.1 5 584.0 4.0 4.65 7.5 345.8 0.0 -4,-7 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000021023 Prorp ENSMUST00000183475 ENSMUSP00000139252 TRANSLATION protein_coding - - 5 568.0 4.0 4.15 2.1 340.1 0.0 -4,-7 0.2046 6 14.994 MINOR ENSMUSG00000021023 Prorp ENSMUST00000184980 ENSMUSP00000139123 TRANSLATION protein_coding - - 5 271.0 4.0 4.05 0.0 345.8 0.0 -4,-5 0.0208 1 14.8 MINOR ENSMUSG00000021023 Prorp ENSMUST00000184249 - NO_TRANSLATION retained_intron ENSMUSG00000021023 Prorp ENSMUST00000021411 ENSMUSP00000021411 TRANSLATION protein_coding - CCDS49068.1 1 584.0 4.0 4.65 7.5 345.8 0.0 -4,-7 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000021023 Prorp ENSMUST00000183654 ENSMUSP00000138821 TRANSLATION protein_coding - - 1 215.0 2.0 2.8 3.2 300.9 0.0 -4,-5 0.1472 1 8.28 MINOR ENSMUSG00000021114 Atp6v1d ENSMUST00000219891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021114 Atp6v1d ENSMUST00000219377 - NO_TRANSLATION retained_intron ENSMUSG00000021114 Atp6v1d ENSMUST00000219316 - NO_TRANSLATION retained_intron ENSMUSG00000021114 Atp6v1d ENSMUST00000021536 ENSMUSP00000021536 TRANSLATION protein_coding - CCDS26002.1 1 247.0 0.0 7.0 32.2 254.4 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000056770 Setd3 ENSMUST00000147466 ENSMUSP00000121406 TRANSLATION nonsense_mediated_decay - - 1 81.0 0.0 1.8 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000056770 Setd3 ENSMUST00000169951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056770 Setd3 ENSMUST00000125210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056770 Setd3 ENSMUST00000148119 - NO_TRANSLATION retained_intron ENSMUSG00000056770 Setd3 ENSMUST00000109879 ENSMUSP00000105505 TRANSLATION protein_coding - - 3 290.0 11.0 6.71 0.0 33.9 0.0 -4,-7 0.0 11 3.336 MINOR ENSMUSG00000056770 Setd3 ENSMUST00000125916 ENSMUSP00000122520 TRANSLATION protein_coding stop - 3 155.0 4.0 3.96 0.0 0.0 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000056770 Setd3 ENSMUST00000071095 ENSMUSP00000066413 TRANSLATION protein_coding - CCDS26159.1 1 594.0 15.0 11.01 14.6 163.0 0.0 -4,-7 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000056770 Setd3 ENSMUST00000132682 ENSMUSP00000123159 TRANSLATION nonsense_mediated_decay - - 1 81.0 0.0 1.8 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000096326 Ighv1-78 ENSMUST00000163670 ENSMUSP00000128082 TRANSLATION IG_V_gene start/stop - - 98.0 8.0 1.0 0.0 60.2 0.0 -4,-5 0.0599 1 -2.0 ALTERNATIVE:2 ENSMUSG00000096326 Ighv1-78 ENSMUST00000199373 ENSMUSP00000143632 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 60.2 0.0 4,-1 0.854 1 -2.0 PRINCIPAL:5 ENSMUSG00000091803 Cox16 ENSMUST00000169124 ENSMUSP00000128281 TRANSLATION protein_coding - - 2 69.0 0.0 1.2 0.0 48.0 1.0 -1,1 0.0015 1 7.758 MINOR ENSMUSG00000091803 Cox16 ENSMUST00000166723 ENSMUSP00000130935 TRANSLATION protein_coding - CCDS83977.1 2 81.0 0.0 1.2 0.0 48.1 1.0 -1,1 0.0188 1 7.764 MINOR ENSMUSG00000091803 Cox16 ENSMUST00000171237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091803 Cox16 ENSMUST00000169912 - NO_TRANSLATION retained_intron ENSMUSG00000091803 Cox16 ENSMUST00000168463 ENSMUSP00000127295 TRANSLATION protein_coding - CCDS83978.1 2 79.0 0.0 1.365 0.0 49.0 1.0 -1,1 0.0194 1 8.382 MINOR ENSMUSG00000091803 Cox16 ENSMUST00000002757 ENSMUSP00000002757 TRANSLATION protein_coding - CCDS26020.1 1 106.0 0.0 1.8 11.4 76.7 1.0 -1,1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000091803 Cox16 ENSMUST00000110340 ENSMUSP00000105969 TRANSLATION protein_coding - CCDS83976.1 1 77.0 0.0 1.2 0.0 51.8 1.0 -1,1 0.0191 1 8.052 MINOR ENSMUSG00000091803 Cox16 ENSMUST00000167819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091803 Cox16 ENSMUST00000163282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004698 Hdac9 ENSMUST00000239340 ENSMUSP00000159264 TRANSLATION protein_coding - - - 575.0 0.0 1.05 0.1 120.7 0.0 -4,-5 0.0133 4 1.5 MINOR ENSMUSG00000004698 Hdac9 ENSMUST00000239321 ENSMUSP00000159253 TRANSLATION protein_coding - - - 565.0 0.0 1.05 4.2 110.2 0.0 -4,-6 0.3102 4 2.622 MINOR ENSMUSG00000004698 Hdac9 ENSMUST00000211632 - NO_TRANSLATION retained_intron ENSMUSG00000004698 Hdac9 ENSMUST00000110819 ENSMUSP00000106443 TRANSLATION protein_coding - CCDS36432.1 1 588.0 0.0 1.05 6.7 110.2 0.0 -4,-5 0.5668 5 3.5 MINOR ENSMUSG00000004698 Hdac9 ENSMUST00000209990 ENSMUSP00000147395 TRANSLATION protein_coding - - 5 1023.0 12.0 11.26 4.3 392.2 0.0 -4,-5 0.7683 5 15.158 ALTERNATIVE:2 ENSMUSG00000004698 Hdac9 ENSMUST00000209750 ENSMUSP00000148029 TRANSLATION protein_coding - - 5 1067.0 12.0 11.26 4.3 392.2 0.0 -4,-5 1.0 6 15.158 PRINCIPAL:4 ENSMUSG00000004698 Hdac9 ENSMUST00000209463 ENSMUSP00000148007 TRANSLATION protein_coding stop - 3 114.0 0.0 1.05 0.0 101.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000004698 Hdac9 ENSMUST00000209667 ENSMUSP00000147755 TRANSLATION protein_coding - - 1 544.0 0.0 1.05 6.7 110.2 0.0 -4,-5 0.5309 4 3.5 MINOR ENSMUSG00000004698 Hdac9 ENSMUST00000211752 ENSMUSP00000148224 TRANSLATION nonsense_mediated_decay - - 1 975.0 10.0 9.3 0.0 365.0 0.0 -4,-6 0.0133 6 -2.0 MINOR ENSMUSG00000004698 Hdac9 ENSMUST00000210724 ENSMUSP00000147903 TRANSLATION protein_coding - - 5 936.0 12.0 11.155 0.0 381.7 0.0 -4,-5 0.0834 6 13.79 MINOR ENSMUSG00000004698 Hdac9 ENSMUST00000211107 ENSMUSP00000147869 TRANSLATION protein_coding - - 5 560.0 0.0 1.05 1.7 120.7 0.0 -4,-5 0.0854 5 1.746 MINOR ENSMUSG00000004698 Hdac9 ENSMUST00000209902 ENSMUSP00000147519 TRANSLATION protein_coding - - 5 1064.0 12.0 11.26 4.3 381.7 0.0 -4,-5 0.8622 6 15.158 ALTERNATIVE:2 ENSMUSG00000021096 Ppm1a ENSMUST00000222920 - NO_TRANSLATION retained_intron ENSMUSG00000021096 Ppm1a ENSMUST00000221628 ENSMUSP00000152372 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021096 Ppm1a ENSMUST00000021514 ENSMUSP00000021514 TRANSLATION protein_coding - CCDS25970.1 1 382.0 11.0 5.33 36.2 414.5 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000021096 Ppm1a ENSMUST00000223221 - NO_TRANSLATION retained_intron ENSMUSG00000021096 Ppm1a ENSMUST00000221502 ENSMUSP00000152650 TRANSLATION protein_coding stop - 5 69.0 4.0 1.75 0.0 36.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021096 Ppm1a ENSMUST00000222790 ENSMUSP00000152472 TRANSLATION protein_coding stop - 3 27.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021096 Ppm1a ENSMUST00000222896 ENSMUSP00000152116 TRANSLATION protein_coding - - 1 323.0 11.0 3.75 1.7 349.7 0.0 -4,-5 0.0247 11 11.03 MINOR ENSMUSG00000021096 Ppm1a ENSMUST00000223410 - NO_TRANSLATION retained_intron ENSMUSG00000090946 Ccdc71l ENSMUST00000172332 ENSMUSP00000129581 TRANSLATION protein_coding - CCDS49047.1 - 218.0 0.0 0.0 0.0 69.4 0.0 -4,-7 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000021012 Zc3h14 ENSMUST00000110105 ENSMUSP00000105732 TRANSLATION protein_coding - CCDS26100.1 1 735.0 20.0 1.51 8.6 89.9 0.0 -4,-5 1.0 15 17.0 PRINCIPAL:2 ENSMUSG00000021012 Zc3h14 ENSMUST00000223083 ENSMUSP00000152816 TRANSLATION protein_coding stop - 2 269.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 2 -2.0 MINOR ENSMUSG00000021012 Zc3h14 ENSMUST00000110104 ENSMUSP00000105731 TRANSLATION protein_coding - CCDS26099.1 5 604.0 20.0 1.51 6.5 89.9 0.0 -4,-5 0.7246 14 16.172 ALTERNATIVE:1 ENSMUSG00000021012 Zc3h14 ENSMUST00000220660 ENSMUSP00000152841 TRANSLATION nonsense_mediated_decay start - 5 70.0 8.0 0.31 0.0 27.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021012 Zc3h14 ENSMUST00000222461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021012 Zc3h14 ENSMUST00000057000 ENSMUSP00000055879 TRANSLATION protein_coding - CCDS49138.1 1 579.0 20.0 1.51 5.6 89.9 0.0 -4,-5 0.6787 14 15.815 MINOR ENSMUSG00000021012 Zc3h14 ENSMUST00000222146 - NO_TRANSLATION retained_intron ENSMUSG00000021012 Zc3h14 ENSMUST00000221558 - NO_TRANSLATION retained_intron ENSMUSG00000021012 Zc3h14 ENSMUST00000221532 ENSMUSP00000152746 TRANSLATION protein_coding start - 5 238.0 20.0 1.51 0.0 89.9 0.0 -4,-6 0.0461 6 -2.0 MINOR ENSMUSG00000021012 Zc3h14 ENSMUST00000222632 - NO_TRANSLATION retained_intron ENSMUSG00000021012 Zc3h14 ENSMUST00000223451 ENSMUSP00000152382 TRANSLATION nonsense_mediated_decay start - 5 180.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000021012 Zc3h14 ENSMUST00000221576 - NO_TRANSLATION retained_intron ENSMUSG00000021012 Zc3h14 ENSMUST00000021399 ENSMUSP00000021399 TRANSLATION protein_coding - CCDS49139.1 1 309.0 20.0 1.51 7.2 89.9 0.0 -4,-7 0.7361 3 16.448 ALTERNATIVE:1 ENSMUSG00000021288 Klc1 ENSMUST00000124197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021288 Klc1 ENSMUST00000239017 ENSMUSP00000159193 TRANSLATION protein_coding - - - 637.0 0.0 7.0 18.2 183.1 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000021288 Klc1 ENSMUST00000141435 - NO_TRANSLATION retained_intron ENSMUSG00000021288 Klc1 ENSMUST00000120544 ENSMUSP00000113237 TRANSLATION protein_coding - CCDS70423.1 5 560.0 0.0 7.0 7.5 183.1 0.0 -4,-5 0.654 19 13.512 MINOR ENSMUSG00000021288 Klc1 ENSMUST00000134578 ENSMUSP00000120491 TRANSLATION protein_coding start - 3 172.0 0.0 3.25 0.0 41.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021288 Klc1 ENSMUST00000140792 - NO_TRANSLATION retained_intron ENSMUSG00000021288 Klc1 ENSMUST00000118471 ENSMUSP00000113171 TRANSLATION protein_coding - CCDS49182.1 1 542.0 0.0 7.0 7.8 183.1 0.0 -4,-5 0.7959 19 13.58 MINOR ENSMUSG00000021288 Klc1 ENSMUST00000084941 ENSMUSP00000082004 TRANSLATION protein_coding - CCDS36565.1 1 616.0 0.0 7.0 7.6 183.1 0.0 -4,-5 0.8933 19 13.536 MINOR ENSMUSG00000021288 Klc1 ENSMUST00000122300 ENSMUSP00000113997 TRANSLATION protein_coding - CCDS49183.1 1 608.0 0.0 7.0 2.2 179.8 0.0 -4,-5 0.441 19 12.082 MINOR ENSMUSG00000021288 Klc1 ENSMUST00000147203 - NO_TRANSLATION retained_intron ENSMUSG00000021288 Klc1 ENSMUST00000238980 - NO_TRANSLATION retained_intron ENSMUSG00000043945 Adam6a ENSMUST00000053086 ENSMUSP00000059315 TRANSLATION protein_coding - CCDS26208.1 - 754.0 10.0 0.0 0.0 265.8 0.0 3,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000072972 Adam4 ENSMUST00000085319 ENSMUSP00000082427 TRANSLATION protein_coding - CCDS26019.1 - 763.0 8.0 0.16 0.0 280.6 0.0 3,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000096407 Ighv6-5 ENSMUST00000179796 ENSMUSP00000136790 TRANSLATION IG_V_gene start/stop - - 99.0 3.0 1.0 0.0 47.5 0.0 -4,-5 0.0599 1 -2.0 ALTERNATIVE:2 ENSMUSG00000096407 Ighv6-5 ENSMUST00000193936 ENSMUSP00000141679 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.0 0.0 47.1 0.0 -2,-3 0.7019 1 -2.0 PRINCIPAL:5 ENSMUSG00000021071 Trim9 ENSMUST00000223518 - NO_TRANSLATION retained_intron ENSMUSG00000021071 Trim9 ENSMUST00000222603 ENSMUSP00000159335 TRANSLATION protein_coding - - 2 550.0 26.0 3.7 3.0 90.2 0.0 -4,-5 0.0531 17 9.298 MINOR ENSMUSG00000021071 Trim9 ENSMUST00000221294 ENSMUSP00000152691 TRANSLATION protein_coding start - 1 772.0 21.0 5.265 0.0 90.6 0.0 -4,-5 0.0069 15 -2.0 MINOR ENSMUSG00000021071 Trim9 ENSMUST00000110522 ENSMUSP00000106151 TRANSLATION protein_coding - CCDS49078.1 1 788.0 26.0 6.615 0.4 120.7 0.0 -4,-5 0.0841 19 16.02 MINOR ENSMUSG00000021071 Trim9 ENSMUST00000220557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021071 Trim9 ENSMUST00000110520 ENSMUSP00000106149 TRANSLATION protein_coding - CCDS49077.1 1 714.0 26.0 6.615 3.0 120.9 0.0 -4,-5 0.2753 17 16.468 MINOR ENSMUSG00000021071 Trim9 ENSMUST00000167755 ENSMUSP00000127081 TRANSLATION protein_coding - CCDS49079.1 1 547.0 26.0 3.7 0.0 90.2 0.0 -4,-5 0.0052 16 8.862 MINOR ENSMUSG00000021071 Trim9 ENSMUST00000221370 ENSMUSP00000152692 TRANSLATION protein_coding - - 1 536.0 26.0 3.7 0.0 90.2 0.0 -4,-5 0.0026 15 8.862 MINOR ENSMUSG00000021071 Trim9 ENSMUST00000223160 ENSMUSP00000152887 TRANSLATION protein_coding - - 5 710.0 26.0 6.95 19.4 142.5 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000021071 Trim9 ENSMUST00000221041 ENSMUSP00000152496 TRANSLATION protein_coding - - 1 565.0 26.0 3.7 0.0 90.2 0.0 -4,-5 0.0026 16 8.862 MINOR ENSMUSG00000021071 Trim9 ENSMUST00000221306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021071 Trim9 ENSMUST00000222316 ENSMUSP00000152147 TRANSLATION protein_coding - - 2 817.0 26.0 6.365 0.0 140.4 0.0 -4,-5 0.026 18 16.704 MINOR ENSMUSG00000094509 Ighv14-1 ENSMUST00000103463 ENSMUSP00000100244 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.0 0.0 52.1 0.0 4,-1 0.8275 - -2.0 PRINCIPAL:1 ENSMUSG00000021256 Vash1 ENSMUST00000021681 ENSMUSP00000021681 TRANSLATION protein_coding - CCDS49118.1 1 375.0 0.0 4.05 1.1 395.1 0.0 -2,0 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000021033 Gstz1 ENSMUST00000220468 - NO_TRANSLATION retained_intron ENSMUSG00000021033 Gstz1 ENSMUST00000222885 ENSMUSP00000152343 TRANSLATION protein_coding - - 1 161.0 9.0 4.25 21.1 54.3 0.0 -4,-7 0.4805 8 8.836 MINOR ENSMUSG00000021033 Gstz1 ENSMUST00000063117 ENSMUSP00000053540 TRANSLATION protein_coding - CCDS26071.1 1 216.0 15.0 5.83 20.1 93.8 0.0 -4,-2 1.0 10 17.8 PRINCIPAL:4 ENSMUSG00000021033 Gstz1 ENSMUST00000222222 ENSMUSP00000152707 TRANSLATION protein_coding - - 2 215.0 15.0 5.83 19.0 93.8 0.0 -4,-7 0.8584 10 17.584 ALTERNATIVE:1 ENSMUSG00000021033 Gstz1 ENSMUST00000220574 ENSMUSP00000152321 TRANSLATION protein_coding - - 2 161.0 9.0 4.25 21.1 54.3 0.0 -4,-7 0.4805 8 8.836 MINOR ENSMUSG00000058669 Nkx2-9 ENSMUST00000072631 ENSMUSP00000072425 TRANSLATION protein_coding - CCDS25923.1 1 235.0 0.0 0.6 9.2 68.6 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000085793 Lin52 ENSMUST00000221172 - NO_TRANSLATION retained_intron ENSMUSG00000085793 Lin52 ENSMUST00000221033 ENSMUSP00000152849 TRANSLATION protein_coding start - 2 114.0 0.0 1.35 0.0 103.4 0.0 -4,-5 0.0147 2 -2.0 MINOR ENSMUSG00000085793 Lin52 ENSMUST00000222741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000085793 Lin52 ENSMUST00000137170 ENSMUSP00000133045 TRANSLATION protein_coding - - 1 112.0 0.0 1.85 20.4 133.1 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000102301 Ighv8-2 ENSMUST00000195037 ENSMUSP00000141405 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.0 0.0 40.8 0.0 4,-1 0.8292 - -2.0 PRINCIPAL:1 ENSMUSG00000063632 Sox11 ENSMUST00000079063 ENSMUSP00000078070 TRANSLATION protein_coding - CCDS25849.1 - 395.0 0.0 0.4 0.4 90.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021144 Mta1 ENSMUST00000130926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021144 Mta1 ENSMUST00000069690 ENSMUSP00000064338 TRANSLATION protein_coding - - 5 698.0 7.0 5.732 15.4 231.0 0.0 -4,-5 0.8501 14 21.946 PRINCIPAL:1 ENSMUSG00000021144 Mta1 ENSMUST00000109727 ENSMUSP00000105349 TRANSLATION protein_coding - CCDS84004.1 1 703.0 7.0 5.232 3.9 231.9 0.0 -4,-5 0.4581 13 17.802 MINOR ENSMUSG00000021144 Mta1 ENSMUST00000009099 ENSMUSP00000009099 TRANSLATION protein_coding - - 5 715.0 7.0 5.232 6.1 231.9 0.0 -4,-5 0.4073 14 18.414 MINOR ENSMUSG00000021144 Mta1 ENSMUST00000109726 ENSMUSP00000105348 TRANSLATION protein_coding - CCDS36574.1 1 698.0 7.0 5.732 15.4 231.0 0.0 -4,-5 1.0 14 21.946 PRINCIPAL:1 ENSMUSG00000021144 Mta1 ENSMUST00000156030 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021144 Mta1 ENSMUST00000134488 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021144 Mta1 ENSMUST00000109723 ENSMUSP00000105345 TRANSLATION protein_coding - - 5 703.0 7.0 5.232 3.9 231.9 0.0 -4,-5 0.3217 13 17.802 MINOR ENSMUSG00000041702 Btbd7 ENSMUST00000045652 ENSMUSP00000046951 TRANSLATION protein_coding - CCDS26125.1 1 1130.0 0.0 0.0 15.4 120.1 0.0 -4,-7 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000041702 Btbd7 ENSMUST00000221914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041702 Btbd7 ENSMUST00000221376 - NO_TRANSLATION retained_intron ENSMUSG00000041702 Btbd7 ENSMUST00000223554 ENSMUSP00000152426 TRANSLATION protein_coding - CCDS26125.1 1 1130.0 0.0 0.0 15.4 120.1 0.0 -4,-7 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000041702 Btbd7 ENSMUST00000221925 - NO_TRANSLATION retained_intron ENSMUSG00000041702 Btbd7 ENSMUST00000220596 - NO_TRANSLATION retained_intron ENSMUSG00000066637 Ttc32 ENSMUST00000085741 ENSMUSP00000082891 TRANSLATION protein_coding - CCDS25808.1 1 148.0 0.0 3.0 0.4 35.6 0.0 -4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000066637 Ttc32 ENSMUST00000219488 ENSMUSP00000152004 TRANSLATION protein_coding - - 3 138.0 0.0 2.0 0.0 0.0 0.0 -4,-2 0.0 3 4.002 MINOR ENSMUSG00000066637 Ttc32 ENSMUST00000219470 ENSMUSP00000151803 TRANSLATION protein_coding - - 1 119.0 0.0 2.0 0.0 0.0 0.0 -4,-2 0.0 3 4.002 MINOR ENSMUSG00000035451 Foxa1 ENSMUST00000044380 ENSMUSP00000041118 TRANSLATION protein_coding - CCDS25926.1 1 468.0 0.0 0.4 8.7 325.3 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000035451 Foxa1 ENSMUST00000218398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021185 Dglucy ENSMUST00000167322 ENSMUSP00000129876 TRANSLATION protein_coding - CCDS26108.1 1 617.0 0.0 10.33 2.2 583.6 0.0 -4,0 1.0 22 9.0 PRINCIPAL:2 ENSMUSG00000021185 Dglucy ENSMUST00000133970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021185 Dglucy ENSMUST00000154603 ENSMUSP00000119832 TRANSLATION nonsense_mediated_decay - - 5 50.0 0.0 0.2 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000021185 Dglucy ENSMUST00000110069 ENSMUSP00000105696 TRANSLATION protein_coding - CCDS26108.1 1 617.0 0.0 10.33 2.2 583.6 0.0 -4,0 1.0 22 9.0 PRINCIPAL:2 ENSMUSG00000021185 Dglucy ENSMUST00000110073 ENSMUSP00000105700 TRANSLATION protein_coding - - 5 647.0 0.0 10.33 0.0 583.6 0.0 -4,-7 0.0721 22 8.0 ALTERNATIVE:2 ENSMUSG00000021185 Dglucy ENSMUST00000110070 ENSMUSP00000105697 TRANSLATION nonsense_mediated_decay - - 1 570.0 0.0 9.53 0.0 525.5 0.0 -4,0 0.0139 19 -2.0 MINOR ENSMUSG00000021185 Dglucy ENSMUST00000124957 ENSMUSP00000122512 TRANSLATION protein_coding start - 3 72.0 0.0 1.28 0.0 52.8 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000021185 Dglucy ENSMUST00000222484 - NO_TRANSLATION retained_intron ENSMUSG00000021185 Dglucy ENSMUST00000069782 ENSMUSP00000067830 TRANSLATION protein_coding - CCDS26108.1 1 617.0 0.0 10.33 2.2 583.6 0.0 -4,0 1.0 22 9.0 PRINCIPAL:2 ENSMUSG00000021040 Slirp ENSMUST00000161023 ENSMUSP00000125341 TRANSLATION protein_coding - CCDS36503.1 1 112.0 0.0 3.01 4.8 52.1 0.0 -4,0 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000021040 Slirp ENSMUST00000160488 ENSMUSP00000124174 TRANSLATION protein_coding - - 1 99.0 0.0 2.575 0.0 52.1 0.0 -4,0 0.004 5 11.13 MINOR ENSMUSG00000021040 Slirp ENSMUST00000160880 ENSMUSP00000125727 TRANSLATION protein_coding start - 5 79.0 0.0 1.73 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000021040 Slirp ENSMUST00000077462 ENSMUSP00000076673 TRANSLATION protein_coding start - 5 102.0 0.0 2.68 3.8 29.2 0.0 -4,0 0.319 2 -2.0 MINOR ENSMUSG00000011171 Vipr2 ENSMUST00000177199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011171 Vipr2 ENSMUST00000176433 ENSMUSP00000135149 TRANSLATION protein_coding start - 5 123.0 0.0 3.58 0.0 111.8 4.0 -4,-7 0.0042 1 -2.0 MINOR ENSMUSG00000011171 Vipr2 ENSMUST00000011315 ENSMUSP00000011315 TRANSLATION protein_coding - CCDS26210.1 1 437.0 0.0 9.844 2.0 355.1 8.0 4,-1 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000011171 Vipr2 ENSMUST00000176078 - NO_TRANSLATION retained_intron ENSMUSG00000011171 Vipr2 ENSMUST00000175785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011171 Vipr2 ENSMUST00000100988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076709 Ighv1-47 ENSMUST00000194865 ENSMUSP00000142265 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.0 1.0 53.1 0.0 3,-2 0.8528 3 -2.0 PRINCIPAL:5 ENSMUSG00000076709 Ighv1-47 ENSMUST00000103518 ENSMUSP00000100299 TRANSLATION IG_V_gene start/stop - - 98.0 6.0 1.0 0.0 53.1 0.0 -4,-5 0.0589 3 -2.0 ALTERNATIVE:2 ENSMUSG00000021239 Vsx2 ENSMUST00000021665 ENSMUSP00000021665 TRANSLATION protein_coding - CCDS36493.1 1 361.0 0.0 1.8 9.8 111.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021239 Vsx2 ENSMUST00000169934 ENSMUSP00000131009 TRANSLATION protein_coding - CCDS79136.1 1 380.0 0.0 1.8 3.5 111.5 0.0 -4,-5 0.5182 - 12.852 MINOR ENSMUSG00000076620 Ighj2 ENSMUST00000103429 - NO_TRANSLATION processed_transcript ENSMUSG00000076620 Ighj2 ENSMUST00000192746 ENSMUSP00000141579 TRANSLATION IG_J_gene start/stop - - 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000054013 Tmem179 ENSMUST00000066791 ENSMUSP00000068004 TRANSLATION protein_coding - CCDS36570.1 1 233.0 0.0 2.94 27.5 0.0 5.0 -1,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000054013 Tmem179 ENSMUST00000222836 ENSMUSP00000152792 TRANSLATION protein_coding - - 5 100.0 0.0 1.5 0.0 0.0 2.0 -4,-5 0.0096 - 3.06 MINOR ENSMUSG00000048562 Sp8 ENSMUST00000223305 ENSMUSP00000152523 TRANSLATION protein_coding stop - 3 181.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000048562 Sp8 ENSMUST00000063918 ENSMUSP00000065746 TRANSLATION protein_coding - CCDS26213.1 1 486.0 12.0 0.4 0.0 67.2 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000020982 Nemf ENSMUST00000021368 ENSMUSP00000021368 TRANSLATION protein_coding - CCDS25951.1 5 1064.0 0.0 0.5905 0.4 184.4 0.0 -4,-7 1.0 20 9.546 PRINCIPAL:1 ENSMUSG00000020982 Nemf ENSMUST00000220674 - NO_TRANSLATION retained_intron ENSMUSG00000020982 Nemf ENSMUST00000222065 ENSMUSP00000152476 TRANSLATION protein_coding stop - 5 149.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0533 6 -2.0 MINOR ENSMUSG00000020982 Nemf ENSMUST00000221278 - NO_TRANSLATION retained_intron ENSMUSG00000020982 Nemf ENSMUST00000221112 - NO_TRANSLATION retained_intron ENSMUSG00000020982 Nemf ENSMUST00000221794 - NO_TRANSLATION retained_intron ENSMUSG00000020982 Nemf ENSMUST00000221193 - NO_TRANSLATION retained_intron ENSMUSG00000020982 Nemf ENSMUST00000222674 - NO_TRANSLATION retained_intron ENSMUSG00000020982 Nemf ENSMUST00000220959 - NO_TRANSLATION retained_intron ENSMUSG00000020982 Nemf ENSMUST00000220484 ENSMUSP00000152242 TRANSLATION nonsense_mediated_decay - - 3 122.0 0.0 0.898 0.0 0.0 0.0 -4,-7 0.0104 4 -2.0 MINOR ENSMUSG00000020982 Nemf ENSMUST00000221722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020982 Nemf ENSMUST00000222763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011179 Odc1 ENSMUST00000221613 ENSMUSP00000152363 TRANSLATION nonsense_mediated_decay start - 5 197.0 10.0 4.65 0.0 227.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000011179 Odc1 ENSMUST00000221701 - NO_TRANSLATION retained_intron ENSMUSG00000011179 Odc1 ENSMUST00000220849 - NO_TRANSLATION retained_intron ENSMUSG00000011179 Odc1 ENSMUST00000221354 - NO_TRANSLATION retained_intron ENSMUSG00000011179 Odc1 ENSMUST00000222250 - NO_TRANSLATION retained_intron ENSMUSG00000011179 Odc1 ENSMUST00000171737 ENSMUSP00000128661 TRANSLATION protein_coding - CCDS25829.1 1 461.0 15.0 9.33 22.9 404.8 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000011179 Odc1 ENSMUST00000220947 - NO_TRANSLATION retained_intron ENSMUSG00000011179 Odc1 ENSMUST00000222617 ENSMUSP00000152699 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021243 Fcf1 ENSMUST00000171040 ENSMUSP00000131190 TRANSLATION protein_coding - - 3 186.0 3.0 4.0 11.1 135.4 0.0 -4,-5 0.3448 3 16.304 MINOR ENSMUSG00000021243 Fcf1 ENSMUST00000021669 ENSMUSP00000021669 TRANSLATION protein_coding - CCDS49113.1 1 198.0 3.0 4.0 32.0 135.4 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000021243 Fcf1 ENSMUST00000172241 - NO_TRANSLATION retained_intron ENSMUSG00000071235 Vrtn ENSMUST00000166772 ENSMUSP00000128808 TRANSLATION protein_coding - CCDS26048.1 3 740.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9418 - 0.0 PRINCIPAL:1 ENSMUSG00000071235 Vrtn ENSMUST00000222319 ENSMUSP00000152810 TRANSLATION protein_coding stop - 3 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0241 - -2.0 MINOR ENSMUSG00000071235 Vrtn ENSMUST00000221915 ENSMUSP00000152493 TRANSLATION protein_coding stop - 3 132.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0209 - -2.0 MINOR ENSMUSG00000071235 Vrtn ENSMUST00000167227 ENSMUSP00000132050 TRANSLATION protein_coding - CCDS26048.1 3 740.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9418 - 0.0 PRINCIPAL:1 ENSMUSG00000071235 Vrtn ENSMUST00000095551 ENSMUSP00000093207 TRANSLATION protein_coding - CCDS26048.1 1 740.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9418 - 0.0 PRINCIPAL:1 ENSMUSG00000021065 Fut8 ENSMUST00000171770 ENSMUSP00000130845 TRANSLATION protein_coding - CCDS25999.1 1 575.0 7.0 7.0 22.9 39.1 0.0 -1,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000021065 Fut8 ENSMUST00000219299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021065 Fut8 ENSMUST00000062804 ENSMUSP00000054530 TRANSLATION protein_coding - CCDS25999.1 1 575.0 7.0 7.0 22.9 39.1 0.0 -1,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000021065 Fut8 ENSMUST00000218851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021065 Fut8 ENSMUST00000217879 - NO_TRANSLATION retained_intron ENSMUSG00000021065 Fut8 ENSMUST00000177595 ENSMUSP00000136327 TRANSLATION protein_coding - CCDS25999.1 1 575.0 7.0 7.0 22.9 39.1 0.0 -1,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000021065 Fut8 ENSMUST00000219289 - NO_TRANSLATION retained_intron ENSMUSG00000020609 Apob ENSMUST00000037520 ENSMUSP00000035761 TRANSLATION protein_coding stop - 5 4456.0 0.0 0.797 0.0 761.1 0.0 4,-1 0.4878 99 -2.0 MINOR ENSMUSG00000020609 Apob ENSMUST00000171239 ENSMUSP00000129496 TRANSLATION protein_coding start - 1 411.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020609 Apob ENSMUST00000171271 ENSMUSP00000127147 TRANSLATION protein_coding stop - 1 329.0 0.0 0.0 0.0 157.9 0.0 4,-1 0.0005 12 -2.0 MINOR ENSMUSG00000020609 Apob ENSMUST00000037811 ENSMUSP00000036044 TRANSLATION protein_coding - CCDS49022.1 1 4505.0 0.0 0.797 0.1 761.1 0.0 4,-1 1.0 102 12.0 PRINCIPAL:1 ENSMUSG00000059970 Hspa2 ENSMUST00000219555 ENSMUSP00000151408 TRANSLATION protein_coding - CCDS25993.1 - 633.0 20.0 1.0 12.7 867.5 0.0 -4,-5 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000059970 Hspa2 ENSMUST00000080449 ENSMUSP00000079306 TRANSLATION protein_coding - CCDS25993.1 1 633.0 20.0 1.0 12.7 867.5 0.0 -4,-5 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000059060 Rad51b ENSMUST00000079533 ENSMUSP00000078490 TRANSLATION protein_coding - CCDS56845.1 1 258.0 7.0 5.816 0.0 135.0 0.0 -4,-2 0.0118 1 15.15 MINOR ENSMUSG00000059060 Rad51b ENSMUST00000171210 ENSMUSP00000128357 TRANSLATION protein_coding - - 1 350.0 7.0 6.3 8.3 166.4 0.0 -4,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000059060 Rad51b ENSMUST00000221257 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059060 Rad51b ENSMUST00000218039 ENSMUSP00000152105 TRANSLATION protein_coding - - 5 350.0 7.0 6.3 8.3 166.4 0.0 -4,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000041415 Dicer1 ENSMUST00000221293 - NO_TRANSLATION retained_intron ENSMUSG00000041415 Dicer1 ENSMUST00000222519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041415 Dicer1 ENSMUST00000222115 - NO_TRANSLATION retained_intron ENSMUSG00000041415 Dicer1 ENSMUST00020183809 ENSMUSP00001091668 TRANSLATION protein_coding_LoF start/stop - - 57.0 2.0 0.132 0.0 0.0 0.0 -4,-7 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000041415 Dicer1 ENSMUST00020183808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041415 Dicer1 ENSMUST00020183813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041415 Dicer1 ENSMUST00000222002 ENSMUSP00000152413 TRANSLATION protein_coding_LoF start/stop - 1 421.0 9.0 5.962 0.0 44.7 0.0 -4,-7 0.0 7 -2.0 ALTERNATIVE:2 ENSMUSG00000041415 Dicer1 ENSMUST00000222528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041415 Dicer1 ENSMUST00000041987 ENSMUSP00000043676 TRANSLATION protein_coding_LoF start - 1 1916.0 12.0 19.012 5.7 556.0 0.0 -4,-7 1.0 30 -2.0 PRINCIPAL:3 ENSMUSG00000094028 Ighd4-1 ENSMUST00000179520 ENSMUSP00000142153 TRANSLATION IG_D_gene start/stop - - 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000020547 Bzw2 ENSMUST00000223474 ENSMUSP00000152263 TRANSLATION protein_coding stop - 5 208.0 0.0 4.5 0.0 0.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000020547 Bzw2 ENSMUST00000220828 ENSMUSP00000152148 TRANSLATION protein_coding stop - 3 177.0 0.0 3.75 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000020547 Bzw2 ENSMUST00000220763 ENSMUSP00000152765 TRANSLATION protein_coding stop - 3 74.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020547 Bzw2 ENSMUST00000223382 ENSMUSP00000152800 TRANSLATION protein_coding stop - 2 113.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000020547 Bzw2 ENSMUST00000222055 - NO_TRANSLATION retained_intron ENSMUSG00000020547 Bzw2 ENSMUST00000222842 - NO_TRANSLATION retained_intron ENSMUSG00000020547 Bzw2 ENSMUST00000020856 ENSMUSP00000020856 TRANSLATION protein_coding - CCDS25884.1 1 419.0 0.0 9.33 9.2 76.1 0.0 -4,-6 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000020547 Bzw2 ENSMUST00000221388 ENSMUSP00000152232 TRANSLATION protein_coding stop - 5 200.0 0.0 4.83 0.0 0.0 0.0 -4,-5 0.0004 7 -2.0 MINOR ENSMUSG00000020547 Bzw2 ENSMUST00000221521 - NO_TRANSLATION retained_intron ENSMUSG00000020547 Bzw2 ENSMUST00000222279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021179 Nrde2 ENSMUST00000223314 - NO_TRANSLATION retained_intron ENSMUSG00000021179 Nrde2 ENSMUST00000021596 ENSMUSP00000021596 TRANSLATION protein_coding - CCDS70414.1 5 1172.0 0.0 1.4 0.0 348.6 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000021179 Nrde2 ENSMUST00000221954 ENSMUSP00000152698 TRANSLATION protein_coding stop - 2 228.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0008 1 -2.0 MINOR ENSMUSG00000021027 Ralgapa1 ENSMUST00000220017 - NO_TRANSLATION retained_intron ENSMUSG00000021027 Ralgapa1 ENSMUST00000219451 ENSMUSP00000151363 TRANSLATION nonsense_mediated_decay start - 3 49.0 0.0 0.32 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021027 Ralgapa1 ENSMUST00000219323 ENSMUSP00000151705 TRANSLATION protein_coding start - 3 111.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000021027 Ralgapa1 ENSMUST00000219516 - NO_TRANSLATION retained_intron ENSMUSG00000021027 Ralgapa1 ENSMUST00000219542 - NO_TRANSLATION retained_intron ENSMUSG00000021027 Ralgapa1 ENSMUST00000220367 ENSMUSP00000151498 TRANSLATION protein_coding - - 5 2082.0 0.0 2.598 12.8 155.6 0.0 -4,-5 0.8961 32 11.0 ALTERNATIVE:1 ENSMUSG00000021027 Ralgapa1 ENSMUST00000219566 ENSMUSP00000151846 TRANSLATION nonsense_mediated_decay start - 3 172.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 4 -2.0 MINOR ENSMUSG00000021027 Ralgapa1 ENSMUST00000085385 ENSMUSP00000082503 TRANSLATION protein_coding - CCDS36452.1 1 2035.0 0.0 2.598 10.2 155.6 0.0 -4,-5 1.0 32 10.34 PRINCIPAL:4 ENSMUSG00000021027 Ralgapa1 ENSMUST00000219529 - NO_TRANSLATION retained_intron ENSMUSG00000021027 Ralgapa1 ENSMUST00000226244 ENSMUSP00000154749 TRANSLATION protein_coding - - - 2538.0 0.0 2.598 5.2 155.6 0.0 -4,-5 0.4459 36 9.068 MINOR ENSMUSG00000021027 Ralgapa1 ENSMUST00000219432 ENSMUSP00000151857 TRANSLATION protein_coding - - 5 2082.0 0.0 2.598 3.8 155.6 0.0 -4,-5 0.6095 33 8.711 MINOR ENSMUSG00000096078 Ighv1-62-2 ENSMUST00000194581 ENSMUSP00000142208 TRANSLATION IG_V_gene stop - - 119.0 8.0 1.0 1.0 58.4 0.0 3,-2 0.8525 - -2.0 PRINCIPAL:5 ENSMUSG00000096078 Ighv1-62-2 ENSMUST00000163467 ENSMUSP00000129665 TRANSLATION IG_V_gene start/stop - - 100.0 8.0 1.0 0.0 58.4 0.0 -4,-5 0.0599 - -2.0 ALTERNATIVE:2 ENSMUSG00000090765 Gm54637 ENSMUST00000095364 ENSMUSP00000093010 TRANSLATION IG_LV_gene start/stop - - 98.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.5813 - -2.0 PRINCIPAL:1 ENSMUSG00000076630 Ighd1-1 ENSMUST00000103439 ENSMUSP00000141687 TRANSLATION IG_D_gene start/stop - - 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000035329 Fbxo33 ENSMUST00000043204 ENSMUSP00000035948 TRANSLATION protein_coding - CCDS49072.1 1 562.0 0.0 -0.538 7.0 36.7 0.0 -4,0 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000035329 Fbxo33 ENSMUST00000161351 ENSMUSP00000125666 TRANSLATION protein_coding stop - 3 126.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0332 1 -2.0 MINOR ENSMUSG00000035329 Fbxo33 ENSMUST00000160204 - NO_TRANSLATION retained_intron ENSMUSG00000035329 Fbxo33 ENSMUST00000162855 ENSMUSP00000125231 TRANSLATION protein_coding start - 3 114.0 0.0 0.132 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000096805 Ighv9-1 ENSMUST00000103471 ENSMUSP00000100252 TRANSLATION IG_V_gene start/stop - - 98.0 0.0 1.0 0.0 56.9 0.0 -4,-5 0.06 1 -2.0 ALTERNATIVE:2 ENSMUSG00000096805 Ighv9-1 ENSMUST00000195884 ENSMUSP00000141346 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 1.0 56.9 0.0 4,-1 0.848 1 -2.0 PRINCIPAL:5 ENSMUSG00000094124 Ighv1-74 ENSMUST00000196587 ENSMUSP00000143597 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 57.9 0.0 4,-1 0.8343 1 -2.0 PRINCIPAL:1 ENSMUSG00000021244 Ylpm1 ENSMUST00000166605 - NO_TRANSLATION retained_intron ENSMUSG00000021244 Ylpm1 ENSMUST00000168977 ENSMUSP00000128962 TRANSLATION protein_coding - - 5 1433.0 8.0 3.375 0.0 36.0 0.0 -4,-7 0.9955 23 12.0 PRINCIPAL:2 ENSMUSG00000021244 Ylpm1 ENSMUST00000164558 ENSMUSP00000126347 TRANSLATION nonsense_mediated_decay start - 5 1577.0 8.0 3.375 0.0 36.0 0.0 -4,-5 0.4179 29 -2.0 MINOR ENSMUSG00000021244 Ylpm1 ENSMUST00000165803 - NO_TRANSLATION retained_intron ENSMUSG00000021244 Ylpm1 ENSMUST00000169150 - NO_TRANSLATION retained_intron ENSMUSG00000021244 Ylpm1 ENSMUST00000101202 ENSMUSP00000098763 TRANSLATION protein_coding - - 5 1386.0 8.0 3.375 0.0 36.0 0.0 -4,-7 0.4487 22 12.0 ALTERNATIVE:2 ENSMUSG00000021244 Ylpm1 ENSMUST00000021670 ENSMUSP00000021670 TRANSLATION protein_coding - CCDS49114.1 5 2139.0 8.0 3.375 0.0 36.0 0.0 -4,-7 0.7152 37 12.0 ALTERNATIVE:2 ENSMUSG00000021244 Ylpm1 ENSMUST00000167838 - NO_TRANSLATION retained_intron ENSMUSG00000095724 Eif1ad19 ENSMUST00000164517 ENSMUSP00000126351 TRANSLATION protein_coding - CCDS56850.1 1 144.0 0.0 1.0 3.7 69.7 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000034402 Kcnh5 ENSMUST00000042299 ENSMUSP00000046864 TRANSLATION protein_coding - CCDS25980.1 1 988.0 0.0 9.75 17.9 229.1 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000043153 Crppa ENSMUST00000221177 ENSMUSP00000152823 TRANSLATION protein_coding - - 1 348.0 9.0 6.8 2.2 0.0 0.0 -4,-2 0.4038 9 5.126 MINOR ENSMUSG00000043153 Crppa ENSMUST00000223205 ENSMUSP00000152872 TRANSLATION protein_coding - - 1 397.0 18.0 6.6 2.7 0.0 0.0 -4,-6 0.3568 9 11.032 MINOR ENSMUSG00000043153 Crppa ENSMUST00000221452 ENSMUSP00000152115 TRANSLATION protein_coding - - 1 419.0 18.0 6.6 1.0 0.0 0.0 -4,-6 0.1204 7 10.002 MINOR ENSMUSG00000043153 Crppa ENSMUST00000062041 ENSMUSP00000061646 TRANSLATION protein_coding - CCDS49051.1 1 447.0 18.0 7.6 4.3 0.0 0.0 -4,-6 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000043153 Crppa ENSMUST00000223068 ENSMUSP00000152318 TRANSLATION protein_coding - - 1 187.0 9.0 3.5 0.0 0.0 0.0 -4,-2 0.0157 3 0.0 MINOR ENSMUSG00000043153 Crppa ENSMUST00000221895 ENSMUSP00000152392 TRANSLATION protein_coding - - 1 324.0 18.0 5.18 0.0 0.0 0.0 -4,-6 0.0206 5 7.158 MINOR ENSMUSG00000043153 Crppa ENSMUST00000220519 ENSMUSP00000152423 TRANSLATION protein_coding - - 1 286.0 18.0 4.3 0.0 0.0 0.0 -4,-6 0.0182 3 6.0 MINOR ENSMUSG00000021124 Vti1b ENSMUST00000162789 ENSMUSP00000124260 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021124 Vti1b ENSMUST00000163031 ENSMUSP00000124464 TRANSLATION nonsense_mediated_decay start - 5 74.0 0.0 1.63 0.0 44.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021124 Vti1b ENSMUST00000055262 ENSMUSP00000057462 TRANSLATION protein_coding - CCDS26008.1 1 232.0 0.0 5.88 10.7 141.2 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000021124 Vti1b ENSMUST00000162569 ENSMUSP00000124741 TRANSLATION protein_coding start - 3 182.0 0.0 2.3 0.0 78.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000036257 Pnpla8 ENSMUST00000043082 ENSMUSP00000043286 TRANSLATION protein_coding - CCDS36436.1 1 776.0 0.0 1.437 3.5 88.1 0.0 -4,-6 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000036257 Pnpla8 ENSMUST00000218954 ENSMUSP00000151660 TRANSLATION protein_coding stop - 2 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036257 Pnpla8 ENSMUST00000143771 ENSMUSP00000122560 TRANSLATION protein_coding - - 5 711.0 0.0 1.272 0.3 55.0 0.0 -4,-6 0.0208 12 5.31 MINOR ENSMUSG00000036257 Pnpla8 ENSMUST00000122902 ENSMUSP00000120877 TRANSLATION protein_coding - - 1 558.0 0.0 1.437 0.0 88.1 0.0 -4,-5 0.0572 11 8.0 ALTERNATIVE:2 ENSMUSG00000036257 Pnpla8 ENSMUST00000156082 ENSMUSP00000116922 TRANSLATION protein_coding start - 1 137.0 0.0 0.528 0.0 29.1 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000036257 Pnpla8 ENSMUST00000218803 ENSMUSP00000151351 TRANSLATION protein_coding start - 3 160.0 0.0 0.829 0.0 37.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000036257 Pnpla8 ENSMUST00000125757 ENSMUSP00000117126 TRANSLATION protein_coding stop - 2 74.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000034892 Rps29 ENSMUST00000094291 - NO_TRANSLATION retained_intron ENSMUSG00000034892 Rps29 ENSMUST00000037023 ENSMUSP00000038352 TRANSLATION protein_coding - CCDS36461.1 1 56.0 4.0 1.75 33.9 55.8 0.0 -4,-2 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000021223 Papln ENSMUST00000121733 ENSMUSP00000113806 TRANSLATION protein_coding - CCDS56847.1 1 1302.0 3.0 8.468 0.0 624.1 0.0 4,-1 0.7182 30 11.0 ALTERNATIVE:2 ENSMUSG00000021223 Papln ENSMUST00000021646 ENSMUSP00000021646 TRANSLATION protein_coding - CCDS26031.1 1 1280.0 3.0 8.468 0.0 624.1 0.0 4,-1 1.0 30 11.0 PRINCIPAL:2 ENSMUSG00000021223 Papln ENSMUST00000152904 - NO_TRANSLATION retained_intron ENSMUSG00000004789 Dlst ENSMUST00000221357 ENSMUSP00000152664 TRANSLATION nonsense_mediated_decay - CCDS26052.1 1 454.0 6.0 7.455 18.6 344.6 0.0 -4,0 1.0 - -2.0 MINOR ENSMUSG00000004789 Dlst ENSMUST00000223409 - NO_TRANSLATION retained_intron ENSMUSG00000004789 Dlst ENSMUST00000220559 - NO_TRANSLATION retained_intron ENSMUSG00000004789 Dlst ENSMUST00000221842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004789 Dlst ENSMUST00000223332 ENSMUSP00000152235 TRANSLATION nonsense_mediated_decay - - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000004789 Dlst ENSMUST00000223415 - NO_TRANSLATION retained_intron ENSMUSG00000004789 Dlst ENSMUST00000221288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004789 Dlst ENSMUST00000222472 - NO_TRANSLATION retained_intron ENSMUSG00000004789 Dlst ENSMUST00000053811 ENSMUSP00000060346 TRANSLATION protein_coding - CCDS26052.1 1 454.0 6.0 7.455 18.6 344.6 0.0 -4,0 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000004789 Dlst ENSMUST00000220633 - NO_TRANSLATION retained_intron ENSMUSG00000004789 Dlst ENSMUST00000223438 - NO_TRANSLATION retained_intron ENSMUSG00000004789 Dlst ENSMUST00000222998 - NO_TRANSLATION retained_intron ENSMUSG00000004789 Dlst ENSMUST00000223413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021265 Slc25a29 ENSMUST00000137023 - NO_TRANSLATION retained_intron ENSMUSG00000021265 Slc25a29 ENSMUST00000139714 - NO_TRANSLATION retained_intron ENSMUSG00000021265 Slc25a29 ENSMUST00000021693 ENSMUSP00000021693 TRANSLATION protein_coding - CCDS26164.1 1 306.0 0.0 2.75 9.6 218.2 0.0 -3,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000091402 Rd3l ENSMUST00000190680 ENSMUSP00000140569 TRANSLATION protein_coding start - 2 132.0 0.0 0.8 0.0 83.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000091402 Rd3l ENSMUST00000170525 ENSMUSP00000130014 TRANSLATION protein_coding - CCDS49185.1 2 197.0 0.0 1.4 0.0 169.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091402 Rd3l ENSMUST00000185354 ENSMUSP00000140987 TRANSLATION protein_coding - - 1 100.0 0.0 1.2 0.0 120.9 0.0 -4,-2 0.0004 - 8.25 MINOR ENSMUSG00000091402 Rd3l ENSMUST00000190536 ENSMUSP00000140410 TRANSLATION protein_coding - CCDS49185.1 1 197.0 0.0 1.4 0.0 169.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091402 Rd3l ENSMUST00000189759 ENSMUSP00000140454 TRANSLATION protein_coding - CCDS49185.1 1 197.0 0.0 1.4 0.0 169.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000104213 Ighd ENSMUST00000194162 ENSMUSP00000141353 TRANSLATION IG_C_gene start - - 291.0 0.0 1.6 0.0 47.8 0.0 -4,-5 0.7747 5 -2.0 PRINCIPAL:5 ENSMUSG00000104213 Ighd ENSMUST00000192250 ENSMUSP00000141946 TRANSLATION IG_C_gene start - - 258.0 0.0 1.6 0.0 47.8 0.0 -4,-5 0.074 5 -2.0 ALTERNATIVE:2 ENSMUSG00000072905 Eif1ad3 ENSMUST00000110147 ENSMUSP00000105774 TRANSLATION protein_coding - CCDS49128.1 1 144.0 0.0 1.0 3.7 68.9 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000041567 Serpina12 ENSMUST00000043915 ENSMUSP00000045572 TRANSLATION protein_coding - CCDS26145.1 1 413.0 0.0 4.0 2.9 374.2 0.0 0,-4 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000076614 Ighg1 ENSMUST00000194304 ENSMUSP00000141658 TRANSLATION IG_C_gene start - - 393.0 5.0 3.5 0.0 220.0 0.0 -4,-6 0.7561 11 -2.0 PRINCIPAL:5 ENSMUSG00000076614 Ighg1 ENSMUST00000103420 ENSMUSP00000100216 TRANSLATION IG_C_gene start - - 324.0 5.0 3.5 0.0 220.0 0.0 -4,-6 0.0477 11 -2.0 ALTERNATIVE:2 ENSMUSG00000094174 Ighv6-4 ENSMUST00000177949 ENSMUSP00000136881 TRANSLATION IG_V_gene start/stop - - 99.0 6.0 1.0 0.0 50.3 0.0 -4,-5 0.0598 - -2.0 ALTERNATIVE:2 ENSMUSG00000094174 Ighv6-4 ENSMUST00000191918 ENSMUSP00000141798 TRANSLATION IG_V_gene stop - - 119.0 6.0 1.0 0.0 50.3 0.0 2,-2 0.8286 - -2.0 PRINCIPAL:5 ENSMUSG00000050671 Ism2 ENSMUST00000145714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050671 Ism2 ENSMUST00000051601 ENSMUSP00000053451 TRANSLATION protein_coding start - 5 449.0 0.0 1.0 0.0 114.9 0.0 -4,-5 0.0779 - -2.0 MINOR ENSMUSG00000050671 Ism2 ENSMUST00000125733 ENSMUSP00000117108 TRANSLATION protein_coding - CCDS70410.1 5 493.0 0.0 1.0 0.4 114.9 0.0 3,3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020974 Pole2 ENSMUST00000021359 ENSMUSP00000021359 TRANSLATION protein_coding - CCDS36463.1 1 527.0 0.0 13.25 23.5 283.1 0.0 -4,0 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000020974 Pole2 ENSMUST00000221411 ENSMUSP00000152262 TRANSLATION protein_coding - - 1 502.0 0.0 12.0 0.0 281.2 0.0 -4,0 0.0213 5 9.384 MINOR ENSMUSG00000020974 Pole2 ENSMUST00000221986 - NO_TRANSLATION retained_intron ENSMUSG00000020974 Pole2 ENSMUST00000221806 - NO_TRANSLATION retained_intron ENSMUSG00000012076 Brms1l ENSMUST00000220400 - NO_TRANSLATION retained_intron ENSMUSG00000012076 Brms1l ENSMUST00000218779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012076 Brms1l ENSMUST00000219575 - NO_TRANSLATION retained_intron ENSMUSG00000012076 Brms1l ENSMUST00000219419 ENSMUSP00000151316 TRANSLATION nonsense_mediated_decay - - 1 178.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0376 1 -2.0 MINOR ENSMUSG00000012076 Brms1l ENSMUST00000217721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012076 Brms1l ENSMUST00000059250 ENSMUSP00000082500 TRANSLATION protein_coding - CCDS36453.1 1 323.0 0.0 1.4 36.9 0.0 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000012076 Brms1l ENSMUST00000219337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021208 Ifi27l2b ENSMUST00000044687 ENSMUSP00000041712 TRANSLATION protein_coding - CCDS26133.1 1 283.0 0.0 1.0 0.0 186.1 0.0 -1,-3 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000021081 Serpina1f ENSMUST00000021490 ENSMUSP00000021490 TRANSLATION protein_coding - CCDS26137.1 1 411.0 0.0 3.4 0.4 261.7 0.0 1,-4 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000021081 Serpina1f ENSMUST00000118101 ENSMUSP00000113736 TRANSLATION protein_coding - CCDS26137.1 1 411.0 0.0 3.4 0.4 261.7 0.0 1,-4 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000021081 Serpina1f ENSMUST00000117053 ENSMUSP00000112533 TRANSLATION protein_coding - CCDS49155.1 1 356.0 0.0 2.8 0.1 130.8 0.0 1,-4 0.0323 7 4.8 MINOR ENSMUSG00000045690 Wdr89 ENSMUST00000062370 ENSMUSP00000050532 TRANSLATION protein_coding - CCDS49090.1 1 386.0 0.0 1.0 16.7 47.3 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000045690 Wdr89 ENSMUST00000187307 ENSMUSP00000140172 TRANSLATION protein_coding - CCDS49090.1 1 386.0 0.0 1.0 16.7 47.3 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000121570 ENSMUSG00000121570 ENSMUST00000249241 ENSMUSP00000159621 TRANSLATION protein_coding - - - 97.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000020990 Cdkl1 ENSMUST00000021377 ENSMUSP00000021377 TRANSLATION protein_coding - CCDS25955.1 1 352.0 18.0 6.8 30.3 279.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000020990 Cdkl1 ENSMUST00000221646 ENSMUSP00000152086 TRANSLATION protein_coding stop - 2 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0297 - -2.0 MINOR ENSMUSG00000020647 Ncoa1 ENSMUST00000220434 ENSMUSP00000151358 TRANSLATION protein_coding - - 1 1447.0 0.0 7.16 0.0 531.8 0.0 -4,-5 0.2555 22 12.0 MINOR ENSMUSG00000020647 Ncoa1 ENSMUST00000219715 ENSMUSP00000151302 TRANSLATION protein_coding stop - 3 54.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020647 Ncoa1 ENSMUST00000218191 ENSMUSP00000151744 TRANSLATION protein_coding start - 1 430.0 0.0 0.0 0.0 110.3 0.0 -4,-5 0.0012 3 -2.0 MINOR ENSMUSG00000020647 Ncoa1 ENSMUST00000217674 ENSMUSP00000151610 TRANSLATION protein_coding stop - 5 922.0 0.0 6.11 0.0 398.0 0.0 -4,-6 0.0064 16 -2.0 MINOR ENSMUSG00000020647 Ncoa1 ENSMUST00000219275 ENSMUSP00000151904 TRANSLATION protein_coding start - 3 99.0 0.0 1.8 0.0 54.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000020647 Ncoa1 ENSMUST00000217794 ENSMUSP00000151716 TRANSLATION nonsense_mediated_decay - - 1 1330.0 0.0 7.16 0.0 531.8 0.0 -4,-5 0.2462 21 -2.0 MINOR ENSMUSG00000020647 Ncoa1 ENSMUST00000219373 ENSMUSP00000151608 TRANSLATION protein_coding start - 2 154.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000020647 Ncoa1 ENSMUST00000217822 - NO_TRANSLATION retained_intron ENSMUSG00000020647 Ncoa1 ENSMUST00000085814 ENSMUSP00000082971 TRANSLATION protein_coding - CCDS25789.1 1 1405.0 0.0 7.16 9.2 531.8 0.0 -4,-5 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000021236 Entpd5 ENSMUST00000122194 ENSMUSP00000113106 TRANSLATION protein_coding - CCDS26045.1 1 427.0 0.0 10.1 11.5 252.1 0.0 2,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000021236 Entpd5 ENSMUST00000110272 ENSMUSP00000105901 TRANSLATION protein_coding - CCDS26045.1 1 427.0 0.0 10.1 11.5 252.1 0.0 2,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000021236 Entpd5 ENSMUST00000136511 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021236 Entpd5 ENSMUST00000117286 ENSMUSP00000114011 TRANSLATION protein_coding - CCDS26045.1 1 427.0 0.0 10.1 11.5 252.1 0.0 2,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000021236 Entpd5 ENSMUST00000072061 ENSMUSP00000071939 TRANSLATION protein_coding - CCDS36491.1 5 452.0 0.0 10.1 2.7 252.1 0.0 -4,-6 0.4164 7 12.486 MINOR ENSMUSG00000021236 Entpd5 ENSMUST00000120942 ENSMUSP00000112516 TRANSLATION protein_coding - CCDS26045.1 1 427.0 0.0 10.1 11.5 252.1 0.0 2,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000021236 Entpd5 ENSMUST00000021662 ENSMUSP00000021662 TRANSLATION protein_coding - CCDS26045.1 1 427.0 0.0 10.1 11.5 252.1 0.0 2,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000021236 Entpd5 ENSMUST00000135061 - NO_TRANSLATION retained_intron ENSMUSG00000052812 Atad2b ENSMUST00000045664 ENSMUSP00000047445 TRANSLATION protein_coding - - 5 1460.0 19.0 9.62 0.0 200.0 0.0 -4,-2 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000052812 Atad2b ENSMUST00000218303 - NO_TRANSLATION retained_intron ENSMUSG00000052812 Atad2b ENSMUST00000220408 - NO_TRANSLATION retained_intron ENSMUSG00000052812 Atad2b ENSMUST00000219187 - NO_TRANSLATION retained_intron ENSMUSG00000052812 Atad2b ENSMUST00000218859 ENSMUSP00000151695 TRANSLATION nonsense_mediated_decay start - 1 259.0 10.0 1.2 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000044573 Acp1 ENSMUST00000218615 - NO_TRANSLATION retained_intron ENSMUSG00000044573 Acp1 ENSMUST00000074038 ENSMUSP00000073686 TRANSLATION protein_coding - CCDS49045.1 1 158.0 10.0 5.0 35.5 168.3 0.0 -4,-6 0.9826 4 18.0 ALTERNATIVE:1 ENSMUSG00000044573 Acp1 ENSMUST00000222791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044573 Acp1 ENSMUST00000062740 ENSMUSP00000106509 TRANSLATION protein_coding - CCDS36427.1 1 158.0 10.0 4.75 35.5 170.9 0.0 -4,-6 1.0 6 17.502 PRINCIPAL:3 ENSMUSG00000044573 Acp1 ENSMUST00000218696 - NO_TRANSLATION retained_intron ENSMUSG00000044573 Acp1 ENSMUST00000219697 ENSMUSP00000151833 TRANSLATION nonsense_mediated_decay - - 5 114.0 8.0 2.35 1.7 86.5 0.0 -4,-7 0.0242 4 -2.0 MINOR ENSMUSG00000021078 Tomm20l ENSMUST00000021482 ENSMUSP00000021482 TRANSLATION protein_coding - CCDS49080.1 1 152.0 0.0 1.45 7.0 109.1 2.0 -1,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000021078 Tomm20l ENSMUST00000221962 - NO_TRANSLATION retained_intron ENSMUSG00000021078 Tomm20l ENSMUST00000220834 ENSMUSP00000152608 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 31.5 2.0 0,-4 0.005 - -2.0 MINOR ENSMUSG00000048982 Gphb5 ENSMUST00000051079 ENSMUSP00000061488 TRANSLATION protein_coding - CCDS25982.1 1 130.0 0.0 2.0 16.7 66.5 0.0 3,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000002679 Med6 ENSMUST00000161598 ENSMUSP00000124361 TRANSLATION protein_coding - CCDS83982.1 5 181.0 0.0 4.08 4.7 148.8 0.0 -4,-5 0.2739 1 12.532 MINOR ENSMUSG00000002679 Med6 ENSMUST00000160739 - NO_TRANSLATION retained_intron ENSMUSG00000002679 Med6 ENSMUST00000161211 ENSMUSP00000125156 TRANSLATION protein_coding - CCDS83983.1 1 246.0 0.0 4.08 28.9 148.8 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000002679 Med6 ENSMUST00000159187 - NO_TRANSLATION retained_intron ENSMUSG00000002679 Med6 ENSMUST00000161902 ENSMUSP00000125103 TRANSLATION protein_coding stop - 3 132.0 0.0 3.08 0.0 98.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000002679 Med6 ENSMUST00000002756 ENSMUSP00000002756 TRANSLATION protein_coding - CCDS26023.1 1 195.0 0.0 3.08 3.7 98.3 0.0 -4,-6 0.0304 4 7.36 MINOR ENSMUSG00000094862 Ighv1-56 ENSMUST00000194071 ENSMUSP00000141979 TRANSLATION IG_V_gene stop - - 117.0 9.0 1.1 1.0 55.6 0.0 4,-1 0.8542 1 -2.0 PRINCIPAL:5 ENSMUSG00000094862 Ighv1-56 ENSMUST00000103527 ENSMUSP00000100308 TRANSLATION IG_V_gene start/stop - - 98.0 9.0 1.0 0.0 55.6 0.0 -4,-7 0.0378 1 -2.0 ALTERNATIVE:2 ENSMUSG00000021143 Pacs2 ENSMUST00000222406 ENSMUSP00000152250 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021143 Pacs2 ENSMUST00000223502 ENSMUSP00000152439 TRANSLATION protein_coding - - 1 894.0 0.0 1.4 6.6 679.6 0.0 -4,-6 0.8168 12 10.367 ALTERNATIVE:1 ENSMUSG00000021143 Pacs2 ENSMUST00000221475 - NO_TRANSLATION retained_intron ENSMUSG00000021143 Pacs2 ENSMUST00000220715 - NO_TRANSLATION retained_intron ENSMUSG00000021143 Pacs2 ENSMUST00000084891 ENSMUSP00000081953 TRANSLATION protein_coding - CCDS36573.1 5 892.0 0.0 1.4 8.1 679.6 0.0 -4,-6 1.0 12 11.0 PRINCIPAL:4 ENSMUSG00000021143 Pacs2 ENSMUST00000220541 ENSMUSP00000152145 TRANSLATION protein_coding - - 1 862.0 0.0 1.4 0.0 679.6 0.0 -4,-5 0.173 12 8.0 MINOR ENSMUSG00000021143 Pacs2 ENSMUST00000221382 - NO_TRANSLATION retained_intron ENSMUSG00000037660 Gdf7 ENSMUST00000220073 ENSMUSP00000151234 TRANSLATION protein_coding - - 1 453.0 0.0 0.5 0.0 151.4 0.0 1,-2 0.5233 2 8.0 ALTERNATIVE:2 ENSMUSG00000037660 Gdf7 ENSMUST00000037313 ENSMUSP00000038301 TRANSLATION protein_coding - CCDS83954.1 5 461.0 0.0 0.5 0.0 159.6 0.0 1,-2 0.8354 2 8.0 PRINCIPAL:2 ENSMUSG00000055917 Zfp277 ENSMUST00000221604 - NO_TRANSLATION retained_intron ENSMUSG00000055917 Zfp277 ENSMUST00000222394 - NO_TRANSLATION retained_intron ENSMUSG00000055917 Zfp277 ENSMUST00000221847 - NO_TRANSLATION retained_intron ENSMUSG00000055917 Zfp277 ENSMUST00000069692 ENSMUSP00000064226 TRANSLATION protein_coding - CCDS36435.1 1 583.0 15.0 3.2 0.0 170.0 0.0 -4,-5 0.1263 4 18.0 MINOR ENSMUSG00000055917 Zfp277 ENSMUST00000069637 ENSMUSP00000068032 TRANSLATION protein_coding - CCDS25894.1 1 457.0 15.0 3.2 5.7 170.0 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000066440 Zfyve26 ENSMUST00000219842 - NO_TRANSLATION retained_intron ENSMUSG00000066440 Zfyve26 ENSMUST00000218433 - NO_TRANSLATION retained_intron ENSMUSG00000066440 Zfyve26 ENSMUST00000220390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066440 Zfyve26 ENSMUST00000219571 - NO_TRANSLATION retained_intron ENSMUSG00000066440 Zfyve26 ENSMUST00000218377 ENSMUSP00000151280 TRANSLATION protein_coding - - 5 567.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0056 1 0.0 MINOR ENSMUSG00000066440 Zfyve26 ENSMUST00000220262 - NO_TRANSLATION retained_intron ENSMUSG00000066440 Zfyve26 ENSMUST00000219912 ENSMUSP00000151290 TRANSLATION protein_coding start - 1 487.0 8.0 1.565 0.0 61.0 0.0 -4,-5 0.0929 5 -2.0 MINOR ENSMUSG00000066440 Zfyve26 ENSMUST00000220092 - NO_TRANSLATION retained_intron ENSMUSG00000066440 Zfyve26 ENSMUST00000218510 - NO_TRANSLATION retained_intron ENSMUSG00000066440 Zfyve26 ENSMUST00000218447 - NO_TRANSLATION retained_intron ENSMUSG00000066440 Zfyve26 ENSMUST00000220003 - NO_TRANSLATION retained_intron ENSMUSG00000066440 Zfyve26 ENSMUST00000219105 - NO_TRANSLATION retained_intron ENSMUSG00000066440 Zfyve26 ENSMUST00000021547 ENSMUSP00000021547 TRANSLATION protein_coding - CCDS36481.1 1 2529.0 8.0 1.365 0.0 61.0 0.0 -4,-5 1.0 27 17.232 PRINCIPAL:1 ENSMUSG00000066440 Zfyve26 ENSMUST00000217723 - NO_TRANSLATION retained_intron ENSMUSG00000020633 Dcdc2c ENSMUST00000189735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020633 Dcdc2c ENSMUST00000249337 ENSMUSP00000159704 TRANSLATION protein_coding - - - 377.0 0.0 1.8 0.0 116.8 0.0 -4,-7 0.3683 1 8.0 ALTERNATIVE:2 ENSMUSG00000020633 Dcdc2c ENSMUST00000185916 ENSMUSP00000152188 TRANSLATION protein_coding - - 5 689.0 0.0 1.8 0.0 116.8 0.0 -4,-7 0.1043 1 8.0 ALTERNATIVE:2 ENSMUSG00000020633 Dcdc2c ENSMUST00000249338 ENSMUSP00000159705 TRANSLATION protein_coding - - - 392.0 0.0 1.8 0.0 116.8 0.0 -4,-7 0.103 1 8.0 ALTERNATIVE:2 ENSMUSG00000020633 Dcdc2c ENSMUST00000186301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020633 Dcdc2c ENSMUST00000249339 ENSMUSP00000159706 TRANSLATION protein_coding stop - - 386.0 0.0 1.8 0.0 116.8 0.0 -4,-7 0.1493 1 -2.0 MINOR ENSMUSG00000020633 Dcdc2c ENSMUST00000221349 ENSMUSP00000152233 TRANSLATION protein_coding - - 5 376.0 0.0 1.8 0.4 116.8 0.0 -4,-7 0.7856 1 8.0 PRINCIPAL:2 ENSMUSG00000020633 Dcdc2c ENSMUST00000189747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020562 Efcab10 ENSMUST00000020878 ENSMUSP00000020878 TRANSLATION protein_coding - CCDS49048.1 1 132.0 0.0 3.08 7.0 0.0 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000087582 Ighv6-7 ENSMUST00000193397 ENSMUSP00000141701 TRANSLATION IG_V_gene stop - - 119.0 6.0 1.0 0.0 56.5 0.0 4,-1 0.8269 - -2.0 PRINCIPAL:1 ENSMUSG00000021298 Gpr132 ENSMUST00000021729 ENSMUSP00000021729 TRANSLATION protein_coding - CCDS26199.1 1 382.0 0.0 1.198 1.0 109.7 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000021298 Gpr132 ENSMUST00000222776 ENSMUSP00000152509 TRANSLATION protein_coding stop - 5 19.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021189 Atxn3 ENSMUST00000021606 ENSMUSP00000021606 TRANSLATION protein_coding - CCDS26115.1 1 355.0 0.0 6.75 6.2 330.0 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000021189 Atxn3 ENSMUST00000161011 ENSMUSP00000125378 TRANSLATION protein_coding - CCDS49144.1 1 291.0 0.0 6.75 1.8 279.7 0.0 -4,-5 0.2301 3 9.29 MINOR ENSMUSG00000021189 Atxn3 ENSMUST00000160186 ENSMUSP00000124178 TRANSLATION nonsense_mediated_decay start - 5 69.0 0.0 1.0 0.0 95.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021189 Atxn3 ENSMUST00000159883 ENSMUSP00000124419 TRANSLATION protein_coding start - 5 287.0 0.0 6.5 1.8 277.7 0.0 -4,-5 0.0986 3 -2.0 MINOR ENSMUSG00000021189 Atxn3 ENSMUST00000160251 ENSMUSP00000125082 TRANSLATION protein_coding - - 1 296.0 0.0 6.75 0.0 225.5 0.0 -4,-5 0.0282 1 6.0 MINOR ENSMUSG00000094910 D430019H16Rik ENSMUST00000178224 ENSMUSP00000137376 TRANSLATION protein_coding - CCDS56861.1 1 83.0 0.0 0.6 23.6 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000020952 Scfd1 ENSMUST00000218138 ENSMUSP00000151379 TRANSLATION nonsense_mediated_decay start - 3 159.0 0.0 1.483 0.0 43.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000020952 Scfd1 ENSMUST00000219686 - NO_TRANSLATION retained_intron ENSMUSG00000020952 Scfd1 ENSMUST00000218131 - NO_TRANSLATION retained_intron ENSMUSG00000020952 Scfd1 ENSMUST00000219264 - NO_TRANSLATION retained_intron ENSMUSG00000020952 Scfd1 ENSMUST00000219799 - NO_TRANSLATION retained_intron ENSMUSG00000020952 Scfd1 ENSMUST00000021335 ENSMUSP00000021335 TRANSLATION protein_coding - CCDS36439.1 1 639.0 0.0 11.138 6.5 432.2 0.0 -4,-1 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000020952 Scfd1 ENSMUST00000219434 ENSMUSP00000151347 TRANSLATION protein_coding - - 1 390.0 0.0 7.576 0.0 278.7 0.0 -4,-1 0.0 11 0.0 MINOR ENSMUSG00000034258 Flvcr2 ENSMUST00000040461 ENSMUSP00000035569 TRANSLATION protein_coding - CCDS26062.1 1 551.0 0.0 0.0 2.4 101.2 0.0 -4,-5 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000034258 Flvcr2 ENSMUST00000221585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021248 Tmed10 ENSMUST00000222529 - NO_TRANSLATION retained_intron ENSMUSG00000021248 Tmed10 ENSMUST00000040766 ENSMUSP00000037583 TRANSLATION protein_coding - CCDS36498.1 1 219.0 0.0 4.83 9.8 162.3 1.0 3,-1 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000021248 Tmed10 ENSMUST00000223375 - NO_TRANSLATION retained_intron ENSMUSG00000021248 Tmed10 ENSMUST00000222585 ENSMUSP00000152811 TRANSLATION protein_coding - - 3 116.0 0.0 3.08 0.0 110.1 1.0 -4,-5 0.0015 5 5.37 MINOR ENSMUSG00000076653 Ighv7-2 ENSMUST00000193133 ENSMUSP00000141892 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.0 0.0 51.4 0.0 -4,-7 0.7734 1 -2.0 PRINCIPAL:1 ENSMUSG00000041846 Ppp4r3a ENSMUST00000223161 - NO_TRANSLATION retained_intron ENSMUSG00000041846 Ppp4r3a ENSMUST00000163095 ENSMUSP00000129654 TRANSLATION protein_coding - CCDS49142.1 5 833.0 0.0 2.5 11.8 270.3 0.0 -4,-6 0.8793 11 13.864 MINOR ENSMUSG00000041846 Ppp4r3a ENSMUST00000222302 - NO_TRANSLATION retained_intron ENSMUSG00000041846 Ppp4r3a ENSMUST00000223091 ENSMUSP00000152738 TRANSLATION nonsense_mediated_decay start - 5 77.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000041846 Ppp4r3a ENSMUST00000048305 ENSMUSP00000041667 TRANSLATION protein_coding - CCDS26111.1 1 820.0 0.0 2.5 24.2 270.3 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000041846 Ppp4r3a ENSMUST00000223459 ENSMUSP00000152417 TRANSLATION protein_coding start/stop - 2 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000041846 Ppp4r3a ENSMUST00000221912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041846 Ppp4r3a ENSMUST00000222956 - NO_TRANSLATION retained_intron ENSMUSG00000044912 Syt16 ENSMUST00000221073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044912 Syt16 ENSMUST00000110451 ENSMUSP00000106081 TRANSLATION nonsense_mediated_decay - - 1 68.0 0.0 0.0 0.0 0.0 1.0 -2,-5 0.0009 - -2.0 MINOR ENSMUSG00000044912 Syt16 ENSMUST00000238790 ENSMUSP00000158983 TRANSLATION protein_coding - - - 639.0 0.0 2.0 6.9 76.0 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000044912 Syt16 ENSMUST00000221220 ENSMUSP00000152623 TRANSLATION protein_coding - CCDS49089.1 1 549.0 0.0 2.0 0.0 76.0 1.0 -2,-5 0.2634 1 12.0 MINOR ENSMUSG00000044912 Syt16 ENSMUST00000221973 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021136 Smoc1 ENSMUST00000110347 ENSMUSP00000105976 TRANSLATION protein_coding - CCDS49102.1 1 463.0 4.0 2.9625 5.5 280.4 0.0 4,-2 0.8974 13 13.4 ALTERNATIVE:1 ENSMUSG00000021136 Smoc1 ENSMUST00000129362 ENSMUSP00000122858 TRANSLATION protein_coding - - 5 434.0 4.0 2.88 4.3 287.0 0.0 4,-2 0.6492 11 13.298 ALTERNATIVE:2 ENSMUSG00000021136 Smoc1 ENSMUST00000021564 ENSMUSP00000021564 TRANSLATION protein_coding - CCDS26017.1 1 452.0 4.0 2.88 5.5 287.0 0.0 4,-2 1.0 13 13.832 PRINCIPAL:4 ENSMUSG00000096355 Ighv8-4 ENSMUST00000178949 ENSMUSP00000136226 TRANSLATION IG_V_gene start/stop - - 98.0 3.0 1.0 0.0 51.2 0.0 -4,-2 0.0643 - -2.0 ALTERNATIVE:2 ENSMUSG00000096355 Ighv8-4 ENSMUST00000192298 ENSMUSP00000141366 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 0.0 51.2 0.0 2,-3 0.8297 - -2.0 PRINCIPAL:5 ENSMUSG00000004151 Etv1 ENSMUST00000161980 ENSMUSP00000124736 TRANSLATION protein_coding - - 5 419.0 0.0 2.8 5.0 457.8 0.0 -4,-6 0.1821 - 6.716 MINOR ENSMUSG00000004151 Etv1 ENSMUST00000159334 ENSMUSP00000125676 TRANSLATION protein_coding - CCDS49054.1 1 437.0 0.0 2.8 19.3 494.7 0.0 -4,-5 0.7415 - 9.268 MINOR ENSMUSG00000004151 Etv1 ENSMUST00000161513 ENSMUSP00000124166 TRANSLATION protein_coding stop - 5 249.0 0.0 0.0 0.0 292.7 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000004151 Etv1 ENSMUST00000161164 ENSMUSP00000124650 TRANSLATION protein_coding stop - 5 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004151 Etv1 ENSMUST00000161591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004151 Etv1 ENSMUST00000160244 ENSMUSP00000125733 TRANSLATION protein_coding - - 5 454.0 0.0 2.8 4.0 567.2 0.0 -4,-5 0.139 - 9.62 MINOR ENSMUSG00000004151 Etv1 ENSMUST00000160701 ENSMUSP00000124019 TRANSLATION protein_coding - - 5 374.0 0.0 2.8 1.0 438.2 0.0 -4,-5 0.0808 - 6.0 MINOR ENSMUSG00000004151 Etv1 ENSMUST00000162563 ENSMUSP00000125157 TRANSLATION protein_coding - CCDS49053.1 5 477.0 0.0 2.8 23.4 615.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000004151 Etv1 ENSMUST00000160856 ENSMUSP00000125692 TRANSLATION protein_coding - CCDS83959.1 5 459.0 0.0 2.8 6.1 544.6 0.0 -4,-5 0.4415 - 8.64 MINOR ENSMUSG00000004151 Etv1 ENSMUST00000160996 ENSMUSP00000124705 TRANSLATION protein_coding stop - 3 230.0 0.0 0.0 0.0 266.2 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000004151 Etv1 ENSMUST00000220492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004151 Etv1 ENSMUST00000095767 ENSMUSP00000093442 TRANSLATION protein_coding - CCDS49053.1 1 477.0 0.0 2.8 23.4 615.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000004151 Etv1 ENSMUST00000162730 - NO_TRANSLATION retained_intron ENSMUSG00000021257 Angel1 ENSMUST00000167813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021257 Angel1 ENSMUST00000167272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021257 Angel1 ENSMUST00000021682 ENSMUSP00000021682 TRANSLATION protein_coding - CCDS26067.1 1 667.0 0.0 2.63 11.8 124.9 0.0 -2,-1 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000021257 Angel1 ENSMUST00000171293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021257 Angel1 ENSMUST00000163388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021257 Angel1 ENSMUST00000165332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094164 Ighv2-3 ENSMUST00000178229 ENSMUSP00000136577 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.0 0.0 51.2 0.0 4,-1 0.833 - -2.0 PRINCIPAL:1 ENSMUSG00000056987 Garin2 ENSMUST00000218697 ENSMUSP00000151640 TRANSLATION protein_coding stop - 5 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056987 Garin2 ENSMUST00000219551 ENSMUSP00000151845 TRANSLATION protein_coding - - 1 393.0 0.0 1.066 0.0 78.7 0.0 -4,-7 0.785 - 8.0 PRINCIPAL:2 ENSMUSG00000056987 Garin2 ENSMUST00000220212 ENSMUSP00000151962 TRANSLATION nonsense_mediated_decay start - 3 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056987 Garin2 ENSMUST00000219314 - NO_TRANSLATION retained_intron ENSMUSG00000056987 Garin2 ENSMUST00000220101 ENSMUSP00000151673 TRANSLATION nonsense_mediated_decay start - 3 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056987 Garin2 ENSMUST00000220396 ENSMUSP00000151336 TRANSLATION protein_coding stop - 5 91.0 0.0 0.566 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000056987 Garin2 ENSMUST00000219507 ENSMUSP00000151719 TRANSLATION protein_coding start - 2 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056987 Garin2 ENSMUST00000077968 ENSMUSP00000077119 TRANSLATION protein_coding - CCDS49096.1 1 440.0 0.0 1.066 0.0 78.7 0.0 -4,-7 0.4593 - 8.0 ALTERNATIVE:2 ENSMUSG00000056987 Garin2 ENSMUST00000219572 - NO_TRANSLATION retained_intron ENSMUSG00000042350 Arel1 ENSMUST00000167448 ENSMUSP00000127426 TRANSLATION protein_coding stop - 3 64.0 0.0 0.0 0.0 0.0 1.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000042350 Arel1 ENSMUST00000163372 ENSMUSP00000130259 TRANSLATION nonsense_mediated_decay - - 3 99.0 0.0 0.0 0.0 0.0 1.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000042350 Arel1 ENSMUST00000163231 ENSMUSP00000129213 TRANSLATION nonsense_mediated_decay - - 1 502.0 0.0 1.75 0.1 37.3 1.0 -2,-5 0.0025 3 -2.0 MINOR ENSMUSG00000042350 Arel1 ENSMUST00000165886 ENSMUSP00000126508 TRANSLATION protein_coding stop - 3 61.0 0.0 0.0 0.0 0.0 1.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000042350 Arel1 ENSMUST00000169161 ENSMUSP00000126523 TRANSLATION protein_coding stop - 2 160.0 0.0 0.0 0.0 37.3 1.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000042350 Arel1 ENSMUST00000168713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042350 Arel1 ENSMUST00000043169 ENSMUSP00000048780 TRANSLATION protein_coding - CCDS26051.1 1 823.0 0.0 9.25 18.5 302.6 1.0 -2,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000042350 Arel1 ENSMUST00000165093 ENSMUSP00000129147 TRANSLATION protein_coding stop - 3 71.0 0.0 0.0 0.0 0.0 1.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000095863 Ighv1-67 ENSMUST00000198646 ENSMUSP00000143248 TRANSLATION IG_V_gene start/stop - - 117.0 3.0 1.0 1.0 46.4 0.0 4,-1 0.8561 1 -2.0 PRINCIPAL:5 ENSMUSG00000095863 Ighv1-67 ENSMUST00000103538 ENSMUSP00000100319 TRANSLATION IG_V_gene start/stop - - 98.0 3.0 1.0 0.0 46.4 0.0 -4,-6 0.0588 1 -2.0 ALTERNATIVE:2 ENSMUSG00000076661 Ighv16-1 ENSMUST00000103470 ENSMUSP00000100251 TRANSLATION IG_V_gene start/stop - - 99.0 3.0 1.0 0.0 45.9 0.0 -4,-5 0.0231 - -2.0 ALTERNATIVE:2 ENSMUSG00000076661 Ighv16-1 ENSMUST00000195641 ENSMUSP00000141383 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.2 0.0 45.9 0.0 1,-2 0.8282 - -2.0 PRINCIPAL:5 ENSMUSG00000021044 Adck1 ENSMUST00000221630 - NO_TRANSLATION retained_intron ENSMUSG00000021044 Adck1 ENSMUST00000223538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021044 Adck1 ENSMUST00000166940 ENSMUSP00000127254 TRANSLATION protein_coding - CCDS26087.1 1 525.0 0.0 8.75 12.3 134.9 0.0 1,-3 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000021044 Adck1 ENSMUST00000101165 ENSMUSP00000098724 TRANSLATION protein_coding - CCDS26087.1 1 525.0 0.0 8.75 12.3 134.9 0.0 1,-3 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000021044 Adck1 ENSMUST00000222695 ENSMUSP00000152821 TRANSLATION protein_coding - CCDS26087.1 1 525.0 0.0 8.75 12.3 134.9 0.0 1,-3 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000096250 Ighd2-6 ENSMUST00000178230 ENSMUSP00000141615 TRANSLATION IG_D_gene start/stop - - 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000064215 Ifi27 ENSMUST00000148824 - NO_TRANSLATION retained_intron ENSMUSG00000064215 Ifi27 ENSMUST00000140838 ENSMUSP00000117403 TRANSLATION protein_coding stop - 1 105.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0 2 -2.0 MINOR ENSMUSG00000064215 Ifi27 ENSMUST00000153670 - NO_TRANSLATION retained_intron ENSMUSG00000064215 Ifi27 ENSMUST00000122905 - NO_TRANSLATION retained_intron ENSMUSG00000064215 Ifi27 ENSMUST00000076702 ENSMUSP00000075994 TRANSLATION protein_coding - CCDS26131.1 1 205.0 0.0 1.2 0.0 93.0 0.0 -3,-1 0.3513 2 8.0 ALTERNATIVE:2 ENSMUSG00000064215 Ifi27 ENSMUST00000079294 ENSMUSP00000078275 TRANSLATION protein_coding - CCDS36530.1 1 250.0 0.0 1.2 0.0 92.5 0.0 -3,-1 0.3031 2 8.0 ALTERNATIVE:2 ENSMUSG00000064215 Ifi27 ENSMUST00000066701 ENSMUSP00000068729 TRANSLATION protein_coding - CCDS26130.1 1 215.0 0.0 1.2 0.0 92.5 0.0 -3,-1 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000064215 Ifi27 ENSMUST00000085065 ENSMUSP00000082142 TRANSLATION protein_coding - CCDS36529.1 1 260.0 0.0 1.2 0.0 92.5 0.0 -3,-1 0.3138 2 8.0 ALTERNATIVE:2 ENSMUSG00000064215 Ifi27 ENSMUST00000076788 ENSMUSP00000076068 TRANSLATION protein_coding - CCDS26132.1 1 165.0 0.0 1.2 0.0 92.5 0.0 -4,-2 0.3164 1 8.0 ALTERNATIVE:2 ENSMUSG00000002565 Scin ENSMUST00000078481 ENSMUSP00000077573 TRANSLATION protein_coding - CCDS25891.1 1 615.0 21.0 13.25 0.0 284.3 0.0 -4,-5 0.0478 18 10.314 MINOR ENSMUSG00000002565 Scin ENSMUST00000002640 ENSMUSP00000002640 TRANSLATION protein_coding - CCDS49055.1 1 715.0 24.0 15.25 12.3 312.4 0.0 -4,-5 1.0 23 21.0 PRINCIPAL:1 ENSMUSG00000020642 Rnf144a ENSMUST00000221994 - NO_TRANSLATION retained_intron ENSMUSG00000020642 Rnf144a ENSMUST00000222082 ENSMUSP00000152807 TRANSLATION protein_coding stop - 3 132.0 10.0 3.25 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000020642 Rnf144a ENSMUST00000020971 ENSMUSP00000020971 TRANSLATION protein_coding - CCDS36425.1 1 292.0 22.0 4.21 32.9 83.3 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000020642 Rnf144a ENSMUST00000222505 - NO_TRANSLATION retained_intron ENSMUSG00000020642 Rnf144a ENSMUST00000220742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020642 Rnf144a ENSMUST00000062149 ENSMUSP00000056073 TRANSLATION protein_coding - CCDS36425.1 1 292.0 22.0 4.21 32.9 83.3 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000020642 Rnf144a ENSMUST00000223137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020570 Sypl ENSMUST00000020885 ENSMUSP00000020885 TRANSLATION protein_coding - CCDS25873.1 1 243.0 0.0 4.45 7.1 149.6 3.0 -4,-7 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000020570 Sypl ENSMUST00000218816 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020570 Sypl ENSMUST00000076698 ENSMUSP00000075990 TRANSLATION protein_coding - CCDS25872.1 1 261.0 0.0 4.375 5.8 149.6 3.0 -4,0 0.7468 5 7.424 ALTERNATIVE:1 ENSMUSG00000020570 Sypl ENSMUST00000122861 ENSMUSP00000122695 TRANSLATION nonsense_mediated_decay - - 3 79.0 0.0 1.45 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000020570 Sypl ENSMUST00000139339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020570 Sypl ENSMUST00000131562 - NO_TRANSLATION retained_intron ENSMUSG00000020570 Sypl ENSMUST00000129592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061603 Akap6 ENSMUST00000219786 ENSMUSP00000151871 TRANSLATION protein_coding - - 1 1224.0 0.0 0.0 0.0 25.4 0.0 -4,-6 0.891 11 2.0 PRINCIPAL:2 ENSMUSG00000061603 Akap6 ENSMUST00000095737 ENSMUSP00000093406 TRANSLATION protein_coding - CCDS36444.1 1 2307.0 0.0 0.0 0.1 25.4 0.0 -4,-6 0.62 21 2.0 ALTERNATIVE:2 ENSMUSG00000037896 Rcor1 ENSMUST00000116388 ENSMUSP00000112089 TRANSLATION protein_coding - CCDS49179.1 1 382.0 0.0 5.0475 2.1 114.2 0.0 -4,-7 0.706 7 12.612 MINOR ENSMUSG00000037896 Rcor1 ENSMUST00000084968 ENSMUSP00000082034 TRANSLATION protein_coding - - 1 480.0 0.0 5.0475 4.6 114.2 0.0 -1,1 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000034460 Six4 ENSMUST00000043208 ENSMUSP00000036150 TRANSLATION protein_coding - CCDS25974.1 1 775.0 0.0 0.8 3.8 203.4 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:2 ENSMUSG00000034460 Six4 ENSMUST00000175693 ENSMUSP00000135699 TRANSLATION protein_coding - - 5 518.0 0.0 0.8 0.0 203.4 0.0 -4,-5 0.0655 1 8.0 ALTERNATIVE:2 ENSMUSG00000021037 Ahsa1 ENSMUST00000021425 ENSMUSP00000021425 TRANSLATION protein_coding - CCDS26075.1 1 338.0 0.0 7.5 31.0 218.1 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000021037 Ahsa1 ENSMUST00000222728 - NO_TRANSLATION retained_intron ENSMUSG00000021037 Ahsa1 ENSMUST00000223239 - NO_TRANSLATION retained_intron ENSMUSG00000021037 Ahsa1 ENSMUST00000223002 - NO_TRANSLATION retained_intron ENSMUSG00000021037 Ahsa1 ENSMUST00000223352 ENSMUSP00000152471 TRANSLATION protein_coding stop - 3 78.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021238 Aldh6a1 ENSMUST00000085192 ENSMUSP00000082288 TRANSLATION protein_coding - CCDS26046.1 1 535.0 27.0 10.625 2.0 460.2 0.0 -4,0 1.0 30 19.0 PRINCIPAL:1 ENSMUSG00000021238 Aldh6a1 ENSMUST00000222062 - NO_TRANSLATION retained_intron ENSMUSG00000021238 Aldh6a1 ENSMUST00000220491 ENSMUSP00000152269 TRANSLATION protein_coding stop - 5 135.0 0.0 2.875 0.0 76.1 0.0 -4,0 0.0 4 -2.0 MINOR ENSMUSG00000021238 Aldh6a1 ENSMUST00000222656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021238 Aldh6a1 ENSMUST00000222641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000103290 Ighv1-23 ENSMUST00000194625 ENSMUSP00000141293 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.033 1.0 44.4 0.0 4,-1 0.831 - -2.0 PRINCIPAL:1 ENSMUSG00000042050 Dync2i1 ENSMUST00000222539 - NO_TRANSLATION retained_intron ENSMUSG00000042050 Dync2i1 ENSMUST00000222764 - NO_TRANSLATION retained_intron ENSMUSG00000042050 Dync2i1 ENSMUST00000221748 - NO_TRANSLATION retained_intron ENSMUSG00000042050 Dync2i1 ENSMUST00000223039 - NO_TRANSLATION retained_intron ENSMUSG00000042050 Dync2i1 ENSMUST00000221029 - NO_TRANSLATION retained_intron ENSMUSG00000042050 Dync2i1 ENSMUST00000222679 ENSMUSP00000152429 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000042050 Dync2i1 ENSMUST00000220761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042050 Dync2i1 ENSMUST00000039349 ENSMUSP00000047334 TRANSLATION protein_coding - CCDS36575.1 1 999.0 0.0 8.275 0.4 14.5 0.0 -4,-5 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000034912 Mdga2 ENSMUST00000101379 ENSMUSP00000098930 TRANSLATION nonsense_mediated_decay start - 1 134.0 0.0 1.3 0.0 0.0 0.0 -2,-4 0.0 - -2.0 MINOR ENSMUSG00000034912 Mdga2 ENSMUST00000179729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034912 Mdga2 ENSMUST00000037181 ENSMUSP00000046761 TRANSLATION protein_coding - - 1 1025.0 0.0 11.44 7.9 391.0 1.0 -3,-1 0.6236 18 14.244 MINOR ENSMUSG00000034912 Mdga2 ENSMUST00000179577 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034912 Mdga2 ENSMUST00000178724 - NO_TRANSLATION retained_intron ENSMUSG00000034912 Mdga2 ENSMUST00000177690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034912 Mdga2 ENSMUST00000178814 ENSMUSP00000137608 TRANSLATION protein_coding start - 2 1009.0 0.0 11.44 0.0 391.0 1.0 -2,-4 0.1738 18 -2.0 MINOR ENSMUSG00000034912 Mdga2 ENSMUST00000223289 - NO_TRANSLATION retained_intron ENSMUSG00000034912 Mdga2 ENSMUST00000113942 ENSMUSP00000109575 TRANSLATION protein_coding start - - 140.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000034912 Mdga2 ENSMUST00000223141 ENSMUSP00000152613 TRANSLATION protein_coding - CCDS25945.1 2 949.0 0.0 11.44 13.3 391.0 1.0 3,-1 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000034912 Mdga2 ENSMUST00000222987 ENSMUSP00000152049 TRANSLATION protein_coding - - 5 319.0 0.0 2.57 0.0 167.7 0.0 -4,-5 0.0007 5 0.0 MINOR ENSMUSG00000034912 Mdga2 ENSMUST00000222623 ENSMUSP00000152548 TRANSLATION protein_coding - - 5 297.0 0.0 2.57 0.0 167.7 1.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000034912 Mdga2 ENSMUST00000179025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051804 Adam6b ENSMUST00000063317 ENSMUSP00000065529 TRANSLATION protein_coding - CCDS26207.1 - 756.0 10.0 0.16 0.0 266.8 0.0 3,-2 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000020638 Cmpk2 ENSMUST00000220466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020638 Cmpk2 ENSMUST00000020969 ENSMUSP00000020969 TRANSLATION protein_coding - CCDS49039.1 1 447.0 10.0 0.935 3.0 59.6 0.0 -4,0 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000020638 Cmpk2 ENSMUST00000221060 - NO_TRANSLATION retained_intron ENSMUSG00000020638 Cmpk2 ENSMUST00000221826 - NO_TRANSLATION retained_intron ENSMUSG00000076621 Ighj1 ENSMUST00000103430 ENSMUSP00000141217 TRANSLATION IG_J_gene start/stop - - 18.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000048251 Bcl11b ENSMUST00000066060 ENSMUSP00000068258 TRANSLATION protein_coding - CCDS36553.1 1 884.0 22.0 0.0 0.4 110.4 0.0 -4,-7 0.2908 14 8.0 ALTERNATIVE:2 ENSMUSG00000048251 Bcl11b ENSMUST00000109887 ENSMUSP00000105513 TRANSLATION protein_coding - CCDS70419.1 1 690.0 22.0 0.0 0.0 110.4 0.0 -4,-2 0.2627 13 8.0 ALTERNATIVE:2 ENSMUSG00000048251 Bcl11b ENSMUST00000109891 ENSMUSP00000105517 TRANSLATION protein_coding - CCDS36552.1 1 812.0 22.0 0.0 0.4 110.4 0.0 -4,-7 1.0 15 8.0 PRINCIPAL:2 ENSMUSG00000066643 Wdr35 ENSMUST00000161019 - NO_TRANSLATION retained_intron ENSMUSG00000066643 Wdr35 ENSMUST00000159126 - NO_TRANSLATION retained_intron ENSMUSG00000066643 Wdr35 ENSMUST00000085745 ENSMUSP00000082895 TRANSLATION protein_coding - CCDS25807.1 1 1181.0 0.0 1.825 29.9 39.7 0.0 -4,-5 1.0 25 10.0 ALTERNATIVE:1 ENSMUSG00000066643 Wdr35 ENSMUST00000160873 - NO_TRANSLATION retained_intron ENSMUSG00000066643 Wdr35 ENSMUST00000159735 - NO_TRANSLATION retained_intron ENSMUSG00000066643 Wdr35 ENSMUST00000160329 ENSMUSP00000124285 TRANSLATION nonsense_mediated_decay - - 1 186.0 0.0 1.825 0.0 13.1 0.0 -4,-5 0.0166 2 -2.0 MINOR ENSMUSG00000066643 Wdr35 ENSMUST00000111113 ENSMUSP00000106742 TRANSLATION protein_coding - CCDS49027.1 1 1170.0 0.0 1.825 23.8 39.7 0.0 -4,-5 0.9679 26 9.156 PRINCIPAL:3 ENSMUSG00000021279 Cdc42bpb ENSMUST00000220619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021279 Cdc42bpb ENSMUST00000221897 - NO_TRANSLATION retained_intron ENSMUSG00000021279 Cdc42bpb ENSMUST00000220657 ENSMUSP00000152591 TRANSLATION protein_coding start - 3 232.0 0.0 0.0 0.0 21.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021279 Cdc42bpb ENSMUST00000222483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021279 Cdc42bpb ENSMUST00000222196 ENSMUSP00000152832 TRANSLATION protein_coding stop - 3 175.0 9.0 4.15 0.0 33.7 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000021279 Cdc42bpb ENSMUST00000222724 ENSMUSP00000152475 TRANSLATION protein_coding start/stop - 3 249.0 0.0 0.3875 0.0 195.6 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000021279 Cdc42bpb ENSMUST00000041965 ENSMUSP00000042565 TRANSLATION protein_coding - CCDS26176.1 1 1713.0 17.0 8.5275 14.8 674.0 0.0 -4,-6 1.0 39 22.0 PRINCIPAL:1 ENSMUSG00000093894 Ighv1-53 ENSMUST00000103523 ENSMUSP00000100304 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.0 1.0 60.0 0.0 4,-1 0.8327 1 -2.0 PRINCIPAL:1 ENSMUSG00000102364 Ighv8-5 ENSMUST00000194257 ENSMUSP00000142292 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.0 0.0 54.9 0.0 4,-1 0.833 - -2.0 PRINCIPAL:1 ENSMUSG00000021177 Tdp1 ENSMUST00000021594 ENSMUSP00000021594 TRANSLATION protein_coding - CCDS26105.2 1 609.0 0.0 11.25 8.2 460.9 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000021177 Tdp1 ENSMUST00000137653 ENSMUSP00000123269 TRANSLATION protein_coding stop - 1 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021177 Tdp1 ENSMUST00000220685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021177 Tdp1 ENSMUST00000128739 - NO_TRANSLATION retained_intron ENSMUSG00000021177 Tdp1 ENSMUST00000221396 - NO_TRANSLATION retained_intron ENSMUSG00000021177 Tdp1 ENSMUST00000151019 - NO_TRANSLATION retained_intron ENSMUSG00000021177 Tdp1 ENSMUST00000125639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021177 Tdp1 ENSMUST00000153627 ENSMUSP00000118656 TRANSLATION protein_coding - CCDS26105.2 1 609.0 0.0 11.25 8.2 460.9 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000021177 Tdp1 ENSMUST00000126424 - NO_TRANSLATION retained_intron ENSMUSG00000093955 Ighv1-34 ENSMUST00000103512 ENSMUSP00000100293 TRANSLATION IG_V_gene stop - - 117.0 5.0 1.1 1.0 62.5 0.0 3,-2 0.8292 1 -2.0 PRINCIPAL:1 ENSMUSG00000095642 Ighv14-3 ENSMUST00000103469 ENSMUSP00000100250 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.0 1.0 53.0 0.0 4,-1 0.8333 - -2.0 PRINCIPAL:1 ENSMUSG00000021222 Dcaf4 ENSMUST00000021645 ENSMUSP00000021645 TRANSLATION protein_coding - CCDS26027.1 5 519.0 0.0 1.266 0.1 0.0 0.0 -4,-2 0.5966 5 6.0 ALTERNATIVE:2 ENSMUSG00000021222 Dcaf4 ENSMUST00000221944 - NO_TRANSLATION retained_intron ENSMUSG00000021222 Dcaf4 ENSMUST00000223291 ENSMUSP00000152717 TRANSLATION protein_coding - - 1 532.0 0.0 1.266 0.0 0.0 0.0 -4,-7 0.6894 5 6.0 PRINCIPAL:4 ENSMUSG00000021222 Dcaf4 ENSMUST00000221769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021222 Dcaf4 ENSMUST00000222725 - NO_TRANSLATION retained_intron ENSMUSG00000021222 Dcaf4 ENSMUST00000222502 ENSMUSP00000152108 TRANSLATION protein_coding stop - 2 84.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0425 1 -2.0 MINOR ENSMUSG00000021222 Dcaf4 ENSMUST00000222607 - NO_TRANSLATION retained_intron ENSMUSG00000021222 Dcaf4 ENSMUST00000222833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045440 Insm2 ENSMUST00000051857 ENSMUSP00000061046 TRANSLATION protein_coding - CCDS25919.1 - 493.0 20.0 0.0 0.4 44.9 0.0 -4,-1 0.9865 - 12.0 PRINCIPAL:1 ENSMUSG00000035860 Cdhr3 ENSMUST00000095774 ENSMUSP00000093449 TRANSLATION protein_coding - CCDS36430.1 1 831.0 36.0 7.205 0.1 98.3 0.0 3,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000035860 Cdhr3 ENSMUST00000219158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035860 Cdhr3 ENSMUST00000219453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035860 Cdhr3 ENSMUST00000219065 - NO_TRANSLATION retained_intron ENSMUSG00000094088 Ighv1-64 ENSMUST00000103535 ENSMUSP00000100316 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.3 1.0 60.3 0.0 4,-1 0.8313 - -2.0 PRINCIPAL:1 ENSMUSG00000095416 Ighv1-12 ENSMUST00000195469 ENSMUSP00000142024 TRANSLATION IG_V_gene stop - - 117.0 5.0 2.0 1.0 58.2 0.0 4,-3 0.8421 1 -2.0 PRINCIPAL:5 ENSMUSG00000095416 Ighv1-12 ENSMUST00000109711 ENSMUSP00000105333 TRANSLATION IG_V_gene stop - - 60.0 1.0 1.0 0.0 27.0 0.0 3,-3 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000095416 Ighv1-12 ENSMUST00000103500 ENSMUSP00000100281 TRANSLATION IG_V_gene start/stop - - 98.0 5.0 2.0 0.0 58.2 0.0 -4,-7 0.022 1 -2.0 ALTERNATIVE:2 ENSMUSG00000095170 Ighv8-11 ENSMUST00000103536 ENSMUSP00000100317 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.0 0.0 48.1 0.0 4,-1 0.8332 - -2.0 PRINCIPAL:1 ENSMUSG00000047414 Flrt2 ENSMUST00000057324 ENSMUSP00000062171 TRANSLATION protein_coding - CCDS26094.1 1 660.0 0.0 0.8 24.9 159.0 2.0 1,-3 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000047414 Flrt2 ENSMUST00000110117 ENSMUSP00000105744 TRANSLATION protein_coding - CCDS26094.1 1 660.0 0.0 0.8 24.9 159.0 2.0 1,-3 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000060807 Serpina6 ENSMUST00000044159 ENSMUSP00000044033 TRANSLATION protein_coding - CCDS26135.1 1 397.0 0.0 4.2 1.2 319.1 0.0 2,-2 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000060807 Serpina6 ENSMUST00000152517 ENSMUSP00000119290 TRANSLATION protein_coding stop - 3 38.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0029 - -2.0 MINOR ENSMUSG00000021264 Yy1 ENSMUST00000126912 - NO_TRANSLATION retained_intron ENSMUSG00000021264 Yy1 ENSMUST00000021692 ENSMUSP00000021692 TRANSLATION protein_coding - CCDS26163.1 1 414.0 16.0 2.65 3.9 61.4 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000021278 Amn ENSMUST00000021707 ENSMUSP00000021707 TRANSLATION protein_coding - CCDS36564.1 1 458.0 0.0 7.85 0.4 470.4 0.0 4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000021278 Amn ENSMUST00000220551 - NO_TRANSLATION retained_intron ENSMUSG00000021278 Amn ENSMUST00000220903 - NO_TRANSLATION retained_intron ENSMUSG00000052593 Adam17 ENSMUST00000132339 - NO_TRANSLATION retained_intron ENSMUSG00000052593 Adam17 ENSMUST00000145118 ENSMUSP00000136407 TRANSLATION nonsense_mediated_decay - - 1 655.0 10.0 8.35 0.0 266.4 0.0 4,-2 0.0585 9 -2.0 MINOR ENSMUSG00000052593 Adam17 ENSMUST00000142092 ENSMUSP00000136255 TRANSLATION nonsense_mediated_decay - - 3 94.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0021 1 -2.0 MINOR ENSMUSG00000052593 Adam17 ENSMUST00000064536 ENSMUSP00000067953 TRANSLATION protein_coding - CCDS25836.1 1 827.0 10.0 8.614 10.9 275.2 1.0 4,-2 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000052593 Adam17 ENSMUST00000101551 ENSMUSP00000099087 TRANSLATION protein_coding - CCDS70376.1 1 846.0 10.0 8.614 0.0 272.5 1.0 4,-2 0.2872 13 17.838 MINOR ENSMUSG00000052593 Adam17 ENSMUST00000127974 ENSMUSP00000136677 TRANSLATION nonsense_mediated_decay - - 1 222.0 0.0 0.0 0.0 35.1 0.0 4,-2 0.0004 3 -2.0 MINOR ENSMUSG00000052593 Adam17 ENSMUST00000232107 ENSMUSP00000155990 TRANSLATION protein_coding - - - 123.0 0.0 0.0 0.0 0.0 0.0 4,-2 0.0021 2 0.0 MINOR ENSMUSG00000052593 Adam17 ENSMUST00000141799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052593 Adam17 ENSMUST00000232526 ENSMUSP00000155953 TRANSLATION nonsense_mediated_decay - - - 38.0 0.0 0.0 0.0 0.0 0.0 4,-2 0.0011 - -2.0 MINOR ENSMUSG00000052593 Adam17 ENSMUST00000155115 - NO_TRANSLATION retained_intron ENSMUSG00000021130 Galnt16 ENSMUST00000219993 ENSMUSP00000151829 TRANSLATION protein_coding - CCDS36482.1 1 558.0 21.0 11.814 10.1 148.6 1.0 -2,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000021130 Galnt16 ENSMUST00000217926 ENSMUSP00000151370 TRANSLATION protein_coding start - 2 125.0 0.0 1.7 0.0 36.7 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000021130 Galnt16 ENSMUST00000021558 ENSMUSP00000021558 TRANSLATION protein_coding - CCDS36482.1 1 558.0 21.0 11.814 10.1 148.6 1.0 -2,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000021130 Galnt16 ENSMUST00000219267 ENSMUSP00000151800 TRANSLATION nonsense_mediated_decay start - 3 59.0 0.0 1.0 0.0 39.9 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021130 Galnt16 ENSMUST00000218943 ENSMUSP00000151619 TRANSLATION protein_coding - CCDS36482.1 1 558.0 21.0 11.814 10.1 148.6 1.0 -2,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000021130 Galnt16 ENSMUST00000218648 - NO_TRANSLATION retained_intron ENSMUSG00000036613 Eipr1 ENSMUST00000221574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036613 Eipr1 ENSMUST00000035657 ENSMUSP00000038845 TRANSLATION nonsense_mediated_decay - - 5 135.0 0.0 0.575 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000036613 Eipr1 ENSMUST00000221877 ENSMUSP00000152220 TRANSLATION protein_coding - CCDS25855.1 1 386.0 0.0 2.9125 34.9 53.9 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000036613 Eipr1 ENSMUST00000222407 ENSMUSP00000152103 TRANSLATION protein_coding - - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000036613 Eipr1 ENSMUST00000220878 - NO_TRANSLATION retained_intron ENSMUSG00000036613 Eipr1 ENSMUST00000220933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036613 Eipr1 ENSMUST00000221555 ENSMUSP00000152219 TRANSLATION protein_coding stop - 3 172.0 0.0 0.875 0.0 27.3 0.0 -4,-5 0.0009 6 -2.0 MINOR ENSMUSG00000006356 Crip2 ENSMUST00000200380 ENSMUSP00000143334 TRANSLATION protein_coding - CCDS84005.1 3 84.0 9.0 2.25 3.4 57.0 0.0 -4,-7 0.0202 3 7.178 MINOR ENSMUSG00000006356 Crip2 ENSMUST00000197396 - NO_TRANSLATION retained_intron ENSMUSG00000006356 Crip2 ENSMUST00000199976 - NO_TRANSLATION retained_intron ENSMUSG00000006356 Crip2 ENSMUST00000084882 ENSMUSP00000081943 TRANSLATION protein_coding - CCDS26204.1 1 208.0 16.0 4.047 31.0 105.0 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000006356 Crip2 ENSMUST00000196015 ENSMUSP00000143009 TRANSLATION protein_coding - CCDS84005.1 3 84.0 9.0 2.25 3.4 57.0 0.0 -4,-7 0.0202 3 7.178 MINOR ENSMUSG00000006356 Crip2 ENSMUST00000200177 - NO_TRANSLATION retained_intron ENSMUSG00000095859 Ighv1-43 ENSMUST00000195417 ENSMUSP00000142065 TRANSLATION IG_V_gene stop - - 117.0 5.0 1.0 1.0 53.3 0.0 4,-1 0.8565 - -2.0 PRINCIPAL:5 ENSMUSG00000095859 Ighv1-43 ENSMUST00000103517 ENSMUSP00000100298 TRANSLATION IG_V_gene start/stop - - 98.0 5.0 1.0 0.0 53.3 0.0 -4,-5 0.0577 - -2.0 ALTERNATIVE:2 ENSMUSG00000056899 Immp2l ENSMUST00000140790 - NO_TRANSLATION retained_intron ENSMUSG00000056899 Immp2l ENSMUST00000134965 ENSMUSP00000116441 TRANSLATION protein_coding - CCDS83961.1 5 175.0 0.0 4.75 20.0 0.0 0.0 -2,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000056899 Immp2l ENSMUST00000080160 ENSMUSP00000079055 TRANSLATION protein_coding stop - 3 79.0 0.0 2.0 6.5 0.0 0.0 -2,-5 0.1976 2 -2.0 MINOR ENSMUSG00000056899 Immp2l ENSMUST00000153184 - NO_TRANSLATION retained_intron ENSMUSG00000056899 Immp2l ENSMUST00000132121 ENSMUSP00000118779 TRANSLATION protein_coding - CCDS83961.1 5 175.0 0.0 4.75 20.0 0.0 0.0 -2,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000062054 Iah1 ENSMUST00000223345 ENSMUSP00000152708 TRANSLATION protein_coding - - 1 158.0 3.0 3.43 0.0 67.7 0.0 -4,-7 0.0 8 8.946 MINOR ENSMUSG00000062054 Iah1 ENSMUST00000076813 ENSMUSP00000076090 TRANSLATION protein_coding - CCDS25835.1 1 249.0 5.0 5.43 10.9 101.9 0.0 -4,-7 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000062054 Iah1 ENSMUST00000221693 ENSMUSP00000152822 TRANSLATION protein_coding stop - 3 185.0 2.0 3.666 0.0 54.5 0.0 -2,-5 0.0003 8 -2.0 MINOR ENSMUSG00000062054 Iah1 ENSMUST00000222344 ENSMUSP00000152779 TRANSLATION protein_coding start/stop - 3 164.0 3.0 3.43 0.0 67.7 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000113951 Ubl5c ENSMUST00000223236 ENSMUSP00000152093 TRANSLATION protein_coding - - - 73.0 0.0 1.0 31.9 25.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000066366 Serpina1a ENSMUST00000085056 ENSMUSP00000082132 TRANSLATION protein_coding - CCDS26140.1 1 413.0 0.0 4.8 6.9 395.0 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000066366 Serpina1a ENSMUST00000072876 ENSMUSP00000072652 TRANSLATION protein_coding - CCDS79152.1 1 436.0 0.0 4.8 0.0 395.0 0.0 -2,2 0.2295 - 12.0 MINOR ENSMUSG00000066366 Serpina1a ENSMUST00000124717 ENSMUSP00000120398 TRANSLATION protein_coding stop - 3 96.0 0.0 0.8 0.0 52.2 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000048387 Osr1 ENSMUST00000217975 ENSMUSP00000151780 TRANSLATION protein_coding stop - 3 161.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048387 Osr1 ENSMUST00000057021 ENSMUSP00000055486 TRANSLATION protein_coding - CCDS25809.1 1 266.0 12.0 2.0 22.7 62.5 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000063129 Aldoart2 ENSMUST00000080123 ENSMUSP00000079022 TRANSLATION protein_coding - CCDS70384.1 - 364.0 14.0 1.0 36.9 619.5 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000035933 Cog5 ENSMUST00000219672 - NO_TRANSLATION retained_intron ENSMUSG00000035933 Cog5 ENSMUST00000219837 ENSMUSP00000151902 TRANSLATION nonsense_mediated_decay start - 5 21.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035933 Cog5 ENSMUST00000218428 ENSMUSP00000151730 TRANSLATION protein_coding start - 3 99.0 0.0 1.49 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000035933 Cog5 ENSMUST00000036862 ENSMUSP00000044797 TRANSLATION protein_coding - CCDS49046.1 1 829.0 0.0 2.2695 4.1 116.4 0.0 -4,-5 1.0 22 14.0 PRINCIPAL:1 ENSMUSG00000050545 Fam228b ENSMUST00000218905 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050545 Fam228b ENSMUST00000218422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050545 Fam228b ENSMUST00000218575 ENSMUSP00000151270 TRANSLATION protein_coding - - 2 181.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.0029 - 4.398 MINOR ENSMUSG00000050545 Fam228b ENSMUST00000053458 ENSMUSP00000050881 TRANSLATION protein_coding - CCDS36400.1 1 232.0 0.0 4.3 2.2 0.0 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000050545 Fam228b ENSMUST00000217684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050545 Fam228b ENSMUST00000219898 ENSMUSP00000151706 TRANSLATION protein_coding - - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0132 - 0.0 MINOR ENSMUSG00000050545 Fam228b ENSMUST00000218199 ENSMUSP00000151649 TRANSLATION nonsense_mediated_decay - - 1 191.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0036 - -2.0 MINOR ENSMUSG00000050545 Fam228b ENSMUST00000223500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050545 Fam228b ENSMUST00000218856 ENSMUSP00000151222 TRANSLATION protein_coding start - 2 103.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0029 - -2.0 MINOR ENSMUSG00000020598 Nrcam ENSMUST00000219939 ENSMUSP00000152002 TRANSLATION nonsense_mediated_decay start - 5 30.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020598 Nrcam ENSMUST00000217796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020598 Nrcam ENSMUST00000218540 ENSMUSP00000151732 TRANSLATION protein_coding stop - 3 81.0 0.0 1.48 0.0 34.3 0.0 0,-2 0.0009 1 -2.0 MINOR ENSMUSG00000020598 Nrcam ENSMUST00000220123 ENSMUSP00000151844 TRANSLATION nonsense_mediated_decay - - 1 1134.0 0.0 19.0 0.0 459.6 3.0 0,-2 0.1793 26 -2.0 MINOR ENSMUSG00000020598 Nrcam ENSMUST00000218431 ENSMUSP00000151873 TRANSLATION protein_coding stop - 3 232.0 0.0 4.48 0.0 50.9 0.0 0,-2 0.0009 4 -2.0 MINOR ENSMUSG00000020598 Nrcam ENSMUST00000219592 - NO_TRANSLATION retained_intron ENSMUSG00000020598 Nrcam ENSMUST00000110748 ENSMUSP00000106376 TRANSLATION protein_coding - CCDS49057.1 1 1186.0 0.0 18.37 6.8 527.3 3.0 0,-2 1.0 25 8.74 PRINCIPAL:2 ENSMUSG00000020598 Nrcam ENSMUST00000218062 ENSMUSP00000151475 TRANSLATION protein_coding start - 1 168.0 0.0 0.0 0.0 96.0 3.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000020598 Nrcam ENSMUST00000220082 ENSMUSP00000151824 TRANSLATION protein_coding start - 1 220.0 0.0 0.7 0.0 97.7 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020598 Nrcam ENSMUST00000218940 - NO_TRANSLATION retained_intron ENSMUSG00000020598 Nrcam ENSMUST00000218805 - NO_TRANSLATION retained_intron ENSMUSG00000020598 Nrcam ENSMUST00000020939 ENSMUSP00000020939 TRANSLATION protein_coding - CCDS49056.1 1 1256.0 0.0 19.0 0.8 527.3 3.0 0,-2 0.5529 26 8.0 ALTERNATIVE:2 ENSMUSG00000020598 Nrcam ENSMUST00000220126 ENSMUSP00000151296 TRANSLATION protein_coding stop - 5 175.0 0.0 3.48 0.0 50.9 0.0 0,-2 0.0009 2 -2.0 MINOR ENSMUSG00000020598 Nrcam ENSMUST00000220130 - NO_TRANSLATION retained_intron ENSMUSG00000020598 Nrcam ENSMUST00000219928 - NO_TRANSLATION retained_intron ENSMUSG00000020598 Nrcam ENSMUST00000217907 ENSMUSP00000151419 TRANSLATION nonsense_mediated_decay start - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000020598 Nrcam ENSMUST00000219906 ENSMUSP00000151243 TRANSLATION nonsense_mediated_decay start - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021198 Unc79 ENSMUST00000178001 ENSMUSP00000137132 TRANSLATION protein_coding start/stop - 5 188.0 0.0 0.0 0.0 125.7 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000021198 Unc79 ENSMUST00000178467 ENSMUSP00000136293 TRANSLATION nonsense_mediated_decay start - 5 85.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000021198 Unc79 ENSMUST00000178846 - NO_TRANSLATION retained_intron ENSMUSG00000021198 Unc79 ENSMUST00000178076 ENSMUSP00000136888 TRANSLATION protein_coding start - 5 2461.0 0.0 0.0 0.0 494.6 0.0 -4,-2 0.0777 20 -2.0 MINOR ENSMUSG00000021198 Unc79 ENSMUST00000101099 ENSMUSP00000098659 TRANSLATION protein_coding - CCDS49149.2 1 2596.0 0.0 0.0 2.8 598.9 0.0 -4,-5 0.8411 21 6.692 MINOR ENSMUSG00000021198 Unc79 ENSMUST00000179002 ENSMUSP00000136332 TRANSLATION protein_coding - - 1 2654.0 0.0 0.0 6.2 598.9 0.0 -4,-5 1.0 22 8.0 PRINCIPAL:1 ENSMUSG00000021198 Unc79 ENSMUST00000085079 ENSMUSP00000082156 TRANSLATION protein_coding - - 2 2458.0 0.0 0.0 1.0 519.1 0.0 -4,-6 0.1426 20 1.212 MINOR ENSMUSG00000021198 Unc79 ENSMUST00000179039 - NO_TRANSLATION retained_intron ENSMUSG00000021198 Unc79 ENSMUST00000177984 ENSMUSP00000137320 TRANSLATION protein_coding start/stop - 5 231.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.001 1 -2.0 MINOR ENSMUSG00000096803 Eif1ad16 ENSMUST00000178301 ENSMUSP00000137317 TRANSLATION protein_coding - - - 144.0 0.0 1.0 3.7 62.3 0.0 -4,-5 0.8152 - 13.0 PRINCIPAL:1 ENSMUSG00000015143 Actn1 ENSMUST00000219382 - NO_TRANSLATION retained_intron ENSMUSG00000015143 Actn1 ENSMUST00000219634 - NO_TRANSLATION retained_intron ENSMUSG00000015143 Actn1 ENSMUST00000217984 - NO_TRANSLATION retained_intron ENSMUSG00000015143 Actn1 ENSMUST00000220351 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015143 Actn1 ENSMUST00000021554 ENSMUSP00000021554 TRANSLATION protein_coding - CCDS26011.1 1 892.0 5.0 19.5 23.0 519.1 0.0 -4,-5 1.0 32 21.0 PRINCIPAL:1 ENSMUSG00000015143 Actn1 ENSMUST00000167327 ENSMUSP00000127176 TRANSLATION protein_coding - CCDS83972.1 1 887.0 0.0 19.5 23.0 519.1 0.0 -4,-5 0.9833 33 16.0 MINOR ENSMUSG00000015143 Actn1 ENSMUST00000218874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041536 Serpina3a ENSMUST00000109965 ENSMUSP00000105591 TRANSLATION protein_coding - CCDS79153.1 1 232.0 0.0 2.6 0.0 176.6 0.0 -1,-7 0.0093 - 4.002 MINOR ENSMUSG00000041536 Serpina3a ENSMUST00000021496 ENSMUSP00000021496 TRANSLATION protein_coding - CCDS49156.1 5 422.0 0.0 3.6 0.4 351.1 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041536 Serpina3a ENSMUST00000185595 ENSMUSP00000140024 TRANSLATION protein_coding - CCDS49156.1 1 422.0 0.0 3.6 0.4 351.1 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071454 Dtnb ENSMUST00000174414 - NO_TRANSLATION retained_intron ENSMUSG00000071454 Dtnb ENSMUST00000174547 ENSMUSP00000133927 TRANSLATION protein_coding - - 5 596.0 8.0 6.605 5.6 265.0 0.0 -4,-5 0.4309 13 19.228 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000077930 ENSMUSP00000077085 TRANSLATION protein_coding - CCDS36396.2 1 602.0 8.0 6.605 9.7 265.0 0.0 -4,-5 1.0 15 20.32 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000164607 ENSMUSP00000128230 TRANSLATION nonsense_mediated_decay - - 1 608.0 8.0 6.605 0.0 265.0 0.0 -4,-5 0.0734 15 -2.0 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000172735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071454 Dtnb ENSMUST00000173240 ENSMUSP00000133722 TRANSLATION protein_coding - - 5 566.0 8.0 6.605 4.5 265.0 0.0 -4,-5 0.288 12 18.932 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000174293 - NO_TRANSLATION retained_intron ENSMUSG00000071454 Dtnb ENSMUST00000174290 ENSMUSP00000133697 TRANSLATION nonsense_mediated_decay - - 5 149.0 0.0 2.875 0.0 124.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000174663 ENSMUSP00000134146 TRANSLATION protein_coding - - 5 626.0 8.0 6.605 16.0 265.0 0.0 -4,-5 0.9583 15 22.0 PRINCIPAL:1 ENSMUSG00000071454 Dtnb ENSMUST00000173498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071454 Dtnb ENSMUST00000173542 ENSMUSP00000134036 TRANSLATION protein_coding start - 3 107.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000173074 - NO_TRANSLATION retained_intron ENSMUSG00000071454 Dtnb ENSMUST00000173998 ENSMUSP00000133774 TRANSLATION protein_coding stop - 3 90.0 0.0 1.375 0.0 49.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000172598 ENSMUSP00000134124 TRANSLATION protein_coding start - 5 490.0 8.0 2.48 0.0 79.3 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000173483 ENSMUSP00000134390 TRANSLATION nonsense_mediated_decay - - 5 63.0 0.0 1.125 0.0 32.9 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000168806 - NO_TRANSLATION retained_intron ENSMUSG00000071454 Dtnb ENSMUST00000173199 ENSMUSP00000134392 TRANSLATION protein_coding - - 5 609.0 8.0 6.605 9.7 265.0 0.0 -4,-5 0.8285 15 20.32 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000164578 ENSMUSP00000126194 TRANSLATION protein_coding - CCDS49015.1 1 659.0 8.0 6.605 0.0 265.0 0.0 -4,-5 0.1516 15 18.0 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000174109 ENSMUSP00000134151 TRANSLATION nonsense_mediated_decay - - 5 138.0 0.0 2.125 0.0 103.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000101637 ENSMUSP00000099161 TRANSLATION nonsense_mediated_decay - - 1 615.0 8.0 6.605 0.0 265.0 0.0 -4,-5 0.1065 15 -2.0 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000172504 - NO_TRANSLATION retained_intron ENSMUSG00000071454 Dtnb ENSMUST00000174479 ENSMUSP00000133702 TRANSLATION protein_coding - - 1 265.0 0.0 5.605 0.0 231.3 0.0 -4,-5 0.0083 6 7.98 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000174639 ENSMUSP00000133601 TRANSLATION nonsense_mediated_decay - - 5 123.0 0.0 2.125 0.0 104.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000071454 Dtnb ENSMUST00000173524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071454 Dtnb ENSMUST00000173736 ENSMUSP00000134519 TRANSLATION protein_coding - - 5 559.0 8.0 6.605 4.5 265.0 0.0 -4,-5 0.2871 12 18.932 MINOR ENSMUSG00000002803 Btbd6 ENSMUST00000165079 ENSMUSP00000127286 TRANSLATION protein_coding - CCDS49194.1 3 488.0 0.0 4.75 2.6 274.8 0.0 -4,-5 0.6835 - 12.864 MINOR ENSMUSG00000002803 Btbd6 ENSMUST00000223287 ENSMUSP00000152389 TRANSLATION nonsense_mediated_decay - - 2 95.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002803 Btbd6 ENSMUST00000221104 ENSMUSP00000152889 TRANSLATION protein_coding - CCDS49194.1 1 488.0 0.0 4.75 2.6 274.8 0.0 -4,-5 0.6835 - 12.864 MINOR ENSMUSG00000002803 Btbd6 ENSMUST00000220567 - NO_TRANSLATION retained_intron ENSMUSG00000002803 Btbd6 ENSMUST00000002880 ENSMUSP00000002880 TRANSLATION protein_coding - CCDS49193.1 1 539.0 0.0 4.75 4.7 274.8 0.0 -2,0 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000002803 Btbd6 ENSMUST00000223368 ENSMUSP00000152748 TRANSLATION protein_coding start - 2 123.0 0.0 2.75 0.0 43.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002803 Btbd6 ENSMUST00000221500 ENSMUSP00000152193 TRANSLATION protein_coding stop - 5 88.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002803 Btbd6 ENSMUST00000222209 ENSMUSP00000152636 TRANSLATION protein_coding - - 3 95.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000002803 Btbd6 ENSMUST00000223508 ENSMUSP00000152335 TRANSLATION protein_coding start/stop - 3 241.0 0.0 3.75 0.0 96.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000112449 Srp54b ENSMUST00000218128 - NO_TRANSLATION retained_intron ENSMUSG00000112449 Srp54b ENSMUST00000217670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000112449 Srp54b ENSMUST00000110708 ENSMUSP00000106336 TRANSLATION protein_coding - CCDS49065.1 1 504.0 12.0 12.93 35.3 439.2 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000112449 Srp54b ENSMUST00000218889 ENSMUSP00000151868 TRANSLATION protein_coding start - 3 89.0 0.0 2.2896 0.0 74.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000113971 Eif1ad4 ENSMUST00000220585 ENSMUSP00000152354 TRANSLATION protein_coding - - - 144.0 0.0 1.0 3.7 67.1 0.0 -4,-5 0.8152 - 13.0 PRINCIPAL:1 ENSMUSG00000058070 Eml1 ENSMUST00000138456 - NO_TRANSLATION retained_intron ENSMUSG00000058070 Eml1 ENSMUST00000109860 ENSMUSP00000105486 TRANSLATION protein_coding - CCDS36555.1 1 814.0 0.0 17.33 24.3 197.5 0.0 -4,-5 1.0 24 16.0 PRINCIPAL:1 ENSMUSG00000058070 Eml1 ENSMUST00000109857 ENSMUSP00000105483 TRANSLATION protein_coding - CCDS70420.1 1 800.0 0.0 17.33 1.8 197.5 0.0 -4,-5 0.445 23 12.136 MINOR ENSMUSG00000058070 Eml1 ENSMUST00000054955 ENSMUSP00000057209 TRANSLATION protein_coding - CCDS36556.1 1 783.0 0.0 17.33 1.5 197.5 0.0 -4,-5 0.4183 24 12.084 MINOR ENSMUSG00000058070 Eml1 ENSMUST00000155544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058070 Eml1 ENSMUST00000148186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058070 Eml1 ENSMUST00000130999 ENSMUSP00000118325 TRANSLATION nonsense_mediated_decay - - 2 699.0 0.0 13.58 0.0 157.9 0.0 -4,-5 0.0015 21 -2.0 MINOR ENSMUSG00000058070 Eml1 ENSMUST00000123035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047446 Arl4a ENSMUST00000138572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047446 Arl4a ENSMUST00000136441 ENSMUSP00000122987 TRANSLATION nonsense_mediated_decay - - 1 64.0 11.0 1.0 0.0 62.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047446 Arl4a ENSMUST00000101472 ENSMUSP00000099013 TRANSLATION protein_coding - CCDS25890.1 1 200.0 21.0 2.0 34.9 225.5 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000047446 Arl4a ENSMUST00000144910 ENSMUSP00000122126 TRANSLATION nonsense_mediated_decay - - 1 64.0 11.0 1.0 0.0 62.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000047446 Arl4a ENSMUST00000146905 ENSMUSP00000114458 TRANSLATION protein_coding - CCDS25890.1 1 200.0 21.0 2.0 34.9 225.5 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000094957 Ighd5-5 ENSMUST00000178815 ENSMUSP00000141414 TRANSLATION IG_D_gene start/stop - - 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021192 Golga5 ENSMUST00000222744 ENSMUSP00000152653 TRANSLATION protein_coding start - 3 234.0 0.0 0.0 0.0 273.5 0.0 -4,-5 0.0022 9 -2.0 MINOR ENSMUSG00000021192 Golga5 ENSMUST00000179218 ENSMUSP00000137305 TRANSLATION protein_coding - CCDS36526.1 1 729.0 0.0 0.0 10.0 457.7 1.0 -4,-5 1.0 33 9.0 PRINCIPAL:1 ENSMUSG00000021192 Golga5 ENSMUST00000021609 ENSMUSP00000021609 TRANSLATION protein_coding - CCDS36526.1 1 729.0 0.0 0.0 10.0 457.7 1.0 -4,-5 1.0 33 9.0 PRINCIPAL:1 ENSMUSG00000051890 Klhdc1 ENSMUST00000146389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051890 Klhdc1 ENSMUST00000127791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051890 Klhdc1 ENSMUST00000173419 ENSMUSP00000134180 TRANSLATION nonsense_mediated_decay - - 5 303.0 0.0 8.5 0.1 88.0 0.0 -4,-5 0.0423 - -2.0 MINOR ENSMUSG00000051890 Klhdc1 ENSMUST00000063445 ENSMUSP00000068046 TRANSLATION protein_coding - CCDS25949.1 1 406.0 0.0 10.75 5.5 86.1 0.0 -4,-5 1.0 1 13.868 PRINCIPAL:1 ENSMUSG00000002997 Prkar2b ENSMUST00000146865 ENSMUSP00000135290 TRANSLATION protein_coding - - 1 256.0 26.0 6.5 0.1 126.2 0.0 -4,-5 0.0017 7 9.894 MINOR ENSMUSG00000002997 Prkar2b ENSMUST00000003079 ENSMUSP00000003079 TRANSLATION protein_coding - CCDS25869.1 1 416.0 26.0 8.75 10.2 186.3 0.0 -4,-7 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000002997 Prkar2b ENSMUST00000036497 ENSMUSP00000039797 TRANSLATION protein_coding - CCDS25869.1 1 416.0 26.0 8.75 10.2 186.3 0.0 -4,-7 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000079012 Serpina3m ENSMUST00000168797 ENSMUSP00000130979 TRANSLATION protein_coding - CCDS36538.1 1 418.0 0.0 4.0 1.3 410.5 0.0 3,-1 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000079012 Serpina3m ENSMUST00000101078 ENSMUSP00000098639 TRANSLATION protein_coding - CCDS36538.1 1 418.0 0.0 4.0 1.3 410.5 0.0 3,-1 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000066359 Tcl1b1 ENSMUST00000222342 ENSMUSP00000152806 TRANSLATION protein_coding - - 2 129.0 0.0 0.165 0.0 102.6 0.0 -4,-7 0.0014 - 7.428 MINOR ENSMUSG00000066359 Tcl1b1 ENSMUST00000085043 ENSMUSP00000082118 TRANSLATION protein_coding - CCDS36545.1 1 116.0 0.0 0.415 0.0 118.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021253 Tgfb3 ENSMUST00000003687 ENSMUSP00000003687 TRANSLATION protein_coding - CCDS49116.1 1 412.0 0.0 3.4 24.2 210.0 0.0 3,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000096276 Gm2042 ENSMUST00000180706 ENSMUSP00000137784 TRANSLATION protein_coding - CCDS59578.1 1 175.0 0.0 1.7795 0.0 0.0 0.0 -4,-5 0.1296 - 0.0 MINOR ENSMUSG00000096276 Gm2042 ENSMUST00000181300 ENSMUSP00000138047 TRANSLATION protein_coding stop - 3 189.0 0.0 1.7795 0.0 0.0 0.0 -4,-5 0.0024 - -2.0 MINOR ENSMUSG00000096276 Gm2042 ENSMUST00000180707 ENSMUSP00000137804 TRANSLATION protein_coding stop - 3 47.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0033 - -2.0 MINOR ENSMUSG00000096276 Gm2042 ENSMUST00000181347 ENSMUSP00000138012 TRANSLATION protein_coding stop - 2 136.0 0.0 1.98 0.0 0.0 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000096276 Gm2042 ENSMUST00000180803 ENSMUSP00000137832 TRANSLATION protein_coding stop - 3 183.0 0.0 2.3495 0.0 0.0 0.0 -4,-6 0.0036 - -2.0 MINOR ENSMUSG00000096276 Gm2042 ENSMUST00000181326 ENSMUSP00000137729 TRANSLATION protein_coding - - 1 306.0 0.0 3.7595 0.0 0.0 0.0 -4,-5 0.018 - 3.798 MINOR ENSMUSG00000096276 Gm2042 ENSMUST00000110145 ENSMUSP00000105772 TRANSLATION protein_coding - CCDS56852.1 1 496.0 0.0 4.8595 0.0 0.0 0.0 -4,-5 0.996 - 6.0 PRINCIPAL:1 ENSMUSG00000096276 Gm2042 ENSMUST00000181394 ENSMUSP00000137988 TRANSLATION protein_coding stop - 5 199.0 0.0 1.8495 0.0 0.0 0.0 -4,-5 0.0056 - -2.0 MINOR ENSMUSG00000096276 Gm2042 ENSMUST00000181843 ENSMUSP00000137699 TRANSLATION protein_coding stop - 2 73.0 0.0 1.229 0.0 0.0 0.0 -4,-6 0.0078 - -2.0 MINOR ENSMUSG00000096276 Gm2042 ENSMUST00000181031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052221 Ppp1r36 ENSMUST00000218732 - NO_TRANSLATION retained_intron ENSMUSG00000052221 Ppp1r36 ENSMUST00000063977 ENSMUSP00000069849 TRANSLATION protein_coding - CCDS49093.1 5 411.0 0.0 0.0 0.1 352.0 0.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000052221 Ppp1r36 ENSMUST00000219251 - NO_TRANSLATION retained_intron ENSMUSG00000052221 Ppp1r36 ENSMUST00000220187 ENSMUSP00000152006 TRANSLATION protein_coding - - 3 150.0 0.0 0.0 0.0 74.6 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000020566 Atp6v1c2 ENSMUST00000222103 ENSMUSP00000152450 TRANSLATION nonsense_mediated_decay - - 3 102.0 0.0 2.1 0.0 74.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000020566 Atp6v1c2 ENSMUST00000020884 ENSMUSP00000020884 TRANSLATION protein_coding - CCDS49034.1 1 437.0 0.0 9.764 6.0 510.9 0.0 -4,-5 0.2373 6 8.788 MINOR ENSMUSG00000020566 Atp6v1c2 ENSMUST00000095820 ENSMUSP00000093500 TRANSLATION protein_coding - CCDS25827.1 1 427.0 0.0 10.094 8.4 522.2 0.0 -4,-5 0.3758 6 10.398 MINOR ENSMUSG00000020566 Atp6v1c2 ENSMUST00000153090 ENSMUSP00000119686 TRANSLATION protein_coding stop - 5 134.0 0.0 4.128 0.0 158.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020566 Atp6v1c2 ENSMUST00000140751 ENSMUSP00000123415 TRANSLATION nonsense_mediated_decay - - 1 187.0 0.0 3.93 0.0 147.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000020566 Atp6v1c2 ENSMUST00000143131 ENSMUSP00000117993 TRANSLATION protein_coding stop - 5 70.0 0.0 2.1 0.0 80.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020566 Atp6v1c2 ENSMUST00000221129 ENSMUSP00000152515 TRANSLATION protein_coding - - 5 381.0 0.0 11.094 36.2 529.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000020566 Atp6v1c2 ENSMUST00000127185 ENSMUSP00000118635 TRANSLATION protein_coding stop - 3 63.0 0.0 1.85 0.0 69.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020566 Atp6v1c2 ENSMUST00000156727 ENSMUSP00000117139 TRANSLATION protein_coding - - 1 357.0 0.0 7.994 0.0 425.0 0.0 -4,-5 0.0012 4 0.0 MINOR ENSMUSG00000076612 Ighg2c ENSMUST00000103416 ENSMUSP00000100212 TRANSLATION IG_C_gene start - - 404.0 6.0 3.3 0.0 215.5 0.0 -4,-7 0.7536 7 -2.0 PRINCIPAL:5 ENSMUSG00000076612 Ighg2c ENSMUST00000195192 ENSMUSP00000142282 TRANSLATION IG_C_gene start - - 335.0 6.0 3.3 0.0 215.5 0.0 -4,-7 0.0518 7 -2.0 ALTERNATIVE:2 ENSMUSG00000021069 Pygl ENSMUST00000166609 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021069 Pygl ENSMUST00000071250 ENSMUSP00000071231 TRANSLATION protein_coding - CCDS25957.1 1 850.0 57.0 18.83 7.3 1151.9 0.0 -4,-6 1.0 31 20.0 PRINCIPAL:1 ENSMUSG00000021069 Pygl ENSMUST00000161840 - NO_TRANSLATION retained_intron ENSMUSG00000021069 Pygl ENSMUST00000222093 - NO_TRANSLATION retained_intron ENSMUSG00000021069 Pygl ENSMUST00000162613 - NO_TRANSLATION retained_intron ENSMUSG00000021069 Pygl ENSMUST00000161083 ENSMUSP00000125585 TRANSLATION protein_coding - - 1 759.0 48.0 17.5 1.1 1151.9 0.0 -4,-6 0.1791 28 9.374 MINOR ENSMUSG00000094533 Ighv11-1 ENSMUST00000103466 ENSMUSP00000100247 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 0.0 49.9 0.0 2,-2 0.8342 - -2.0 PRINCIPAL:1 ENSMUSG00000021048 Mthfd1 ENSMUST00000218331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021048 Mthfd1 ENSMUST00000218010 - NO_TRANSLATION retained_intron ENSMUSG00000021048 Mthfd1 ENSMUST00000218513 - NO_TRANSLATION retained_intron ENSMUSG00000021048 Mthfd1 ENSMUST00000021443 ENSMUSP00000021443 TRANSLATION protein_coding - CCDS25990.1 1 935.0 29.0 24.25 35.7 1208.0 0.0 -4,-2 1.0 39 22.0 PRINCIPAL:1 ENSMUSG00000021048 Mthfd1 ENSMUST00000220321 ENSMUSP00000151668 TRANSLATION protein_coding stop - 2 160.0 0.0 3.5 0.0 195.4 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000021048 Mthfd1 ENSMUST00000218110 - NO_TRANSLATION retained_intron ENSMUSG00000021048 Mthfd1 ENSMUST00000220046 ENSMUSP00000151500 TRANSLATION protein_coding - - 1 755.0 20.0 19.0 1.1 1015.9 0.0 -4,-5 0.0626 32 0.012 MINOR ENSMUSG00000094652 Ighv1-42 ENSMUST00000191868 ENSMUSP00000142261 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 1.0 52.7 0.0 4,-1 0.8581 1 -2.0 PRINCIPAL:5 ENSMUSG00000094652 Ighv1-42 ENSMUST00000103516 ENSMUSP00000100297 TRANSLATION IG_V_gene start/stop - - 98.0 3.0 1.0 0.0 52.7 0.0 -4,-5 0.0588 1 -2.0 ALTERNATIVE:2 ENSMUSG00000095470 Gm21863 ENSMUST00000179133 ENSMUSP00000135963 TRANSLATION protein_coding - - - 111.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.6805 - 6.0 PRINCIPAL:1 ENSMUSG00000020621 Rdh14 ENSMUST00000020947 ENSMUSP00000020947 TRANSLATION protein_coding - CCDS25811.1 1 334.0 27.0 1.4 2.1 110.1 0.0 1,-3 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000021076 Actr10 ENSMUST00000220770 - NO_TRANSLATION retained_intron ENSMUSG00000021076 Actr10 ENSMUST00000021479 ENSMUSP00000021479 TRANSLATION protein_coding - CCDS25960.1 1 417.0 19.0 10.91 36.9 161.8 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000021076 Actr10 ENSMUST00000221583 - NO_TRANSLATION retained_intron ENSMUSG00000021076 Actr10 ENSMUST00000221165 - NO_TRANSLATION retained_intron ENSMUSG00000021076 Actr10 ENSMUST00000220452 - NO_TRANSLATION retained_intron ENSMUSG00000021076 Actr10 ENSMUST00000223549 ENSMUSP00000152334 TRANSLATION protein_coding stop - 3 145.0 5.0 4.08 0.0 59.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021076 Actr10 ENSMUST00000220582 ENSMUSP00000152759 TRANSLATION nonsense_mediated_decay - - 2 43.0 2.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021076 Actr10 ENSMUST00000222291 - NO_TRANSLATION retained_intron ENSMUSG00000052392 Acot4 ENSMUST00000128162 ENSMUSP00000152805 TRANSLATION protein_coding start - 2 162.0 0.0 2.0 0.0 78.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000052392 Acot4 ENSMUST00000021652 ENSMUSP00000021652 TRANSLATION protein_coding - CCDS26035.1 1 421.0 3.0 4.0 7.3 423.4 0.0 -4,-5 1.0 7 17.0 PRINCIPAL:1 ENSMUSG00000052392 Acot4 ENSMUST00000221860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076677 Ighv6-3 ENSMUST00000103486 ENSMUSP00000100267 TRANSLATION IG_V_gene stop - - 118.0 6.0 1.0 0.0 58.9 0.0 1,-2 0.8282 3 -2.0 PRINCIPAL:1 ENSMUSG00000071342 Lsmem1 ENSMUST00000095760 ENSMUSP00000093434 TRANSLATION protein_coding - CCDS25892.1 1 128.0 0.0 2.0 11.6 233.4 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000071342 Lsmem1 ENSMUST00000220951 ENSMUSP00000152529 TRANSLATION protein_coding - - 1 85.0 0.0 1.0 0.0 79.5 0.0 -4,-5 0.0 2 3.0 MINOR ENSMUSG00000061477 Rps7 ENSMUST00000222808 - NO_TRANSLATION retained_intron ENSMUSG00000061477 Rps7 ENSMUST00000223153 - NO_TRANSLATION retained_intron ENSMUSG00000061477 Rps7 ENSMUST00000222228 - NO_TRANSLATION retained_intron ENSMUSG00000061477 Rps7 ENSMUST00000223318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061477 Rps7 ENSMUST00000074267 ENSMUSP00000073880 TRANSLATION protein_coding - CCDS25851.1 1 194.0 0.0 5.0 35.5 312.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000061477 Rps7 ENSMUST00000220860 - NO_TRANSLATION retained_intron ENSMUSG00000061477 Rps7 ENSMUST00000221871 ENSMUSP00000152456 TRANSLATION protein_coding - CCDS25851.1 1 194.0 0.0 5.0 35.5 312.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000066027 Pramel51 ENSMUST00000220521 ENSMUSP00000152292 TRANSLATION protein_coding - - 1 325.0 0.0 1.9 0.0 0.0 0.0 -4,-5 0.0237 - 4.284 MINOR ENSMUSG00000066027 Pramel51 ENSMUST00000071580 ENSMUSP00000071508 TRANSLATION protein_coding - CCDS49132.1 1 520.0 0.0 2.66 0.0 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000066027 Pramel51 ENSMUST00000222081 ENSMUSP00000152194 TRANSLATION protein_coding start - 1 323.0 0.0 1.56 0.0 0.0 0.0 -4,-6 0.0323 - -2.0 MINOR ENSMUSG00000066027 Pramel51 ENSMUST00000222556 ENSMUSP00000152744 TRANSLATION protein_coding start - 1 192.0 0.0 0.76 0.0 0.0 0.0 -4,-6 0.0121 - -2.0 MINOR ENSMUSG00000066027 Pramel51 ENSMUST00000221884 ENSMUSP00000152775 TRANSLATION nonsense_mediated_decay start - 5 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0363 - -2.0 MINOR ENSMUSG00000066027 Pramel51 ENSMUST00000223172 ENSMUSP00000152572 TRANSLATION nonsense_mediated_decay start - 5 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0259 - -2.0 MINOR ENSMUSG00000066027 Pramel51 ENSMUST00000222391 ENSMUSP00000152474 TRANSLATION nonsense_mediated_decay start - 3 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.023 - -2.0 MINOR ENSMUSG00000041347 Bdkrb1 ENSMUST00000041229 ENSMUSP00000045335 TRANSLATION protein_coding - CCDS26155.1 - 334.0 0.0 1.28 0.1 152.6 9.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041347 Bdkrb1 ENSMUST00000183086 ENSMUSP00000138216 TRANSLATION protein_coding stop - 5 268.0 0.0 0.5 0.0 113.0 7.0 -4,-7 0.0067 - -2.0 MINOR ENSMUSG00000041347 Bdkrb1 ENSMUST00000182899 ENSMUSP00000138118 TRANSLATION protein_coding - CCDS26155.1 5 334.0 0.0 1.28 0.1 152.6 9.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000001729 Akt1 ENSMUST00000159815 - NO_TRANSLATION retained_intron ENSMUSG00000001729 Akt1 ENSMUST00000128300 ENSMUSP00000122222 TRANSLATION protein_coding - - 5 437.0 22.0 10.694 4.0 279.6 0.0 -4,-6 0.0505 7 6.578 MINOR ENSMUSG00000001729 Akt1 ENSMUST00000123563 - NO_TRANSLATION retained_intron ENSMUSG00000001729 Akt1 ENSMUST00000144550 ENSMUSP00000123689 TRANSLATION protein_coding stop - 5 202.0 16.0 5.264 0.0 93.2 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000001729 Akt1 ENSMUST00000001780 ENSMUSP00000001780 TRANSLATION protein_coding - CCDS26194.1 1 480.0 29.0 11.694 35.8 364.6 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000001729 Akt1 ENSMUST00000139388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001729 Akt1 ENSMUST00000130342 ENSMUSP00000118190 TRANSLATION protein_coding stop - 3 134.0 8.0 3.5 0.0 63.7 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000001729 Akt1 ENSMUST00000127902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001729 Akt1 ENSMUST00000127588 - NO_TRANSLATION retained_intron ENSMUSG00000043060 Fscb ENSMUST00000059833 ENSMUSP00000051554 TRANSLATION protein_coding - CCDS49073.1 - 1062.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9917 6 0.0 PRINCIPAL:1 ENSMUSG00000095923 Ighv1-37 ENSMUST00000193950 ENSMUSP00000141375 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 1.0 44.5 0.0 3,-2 0.8307 - -2.0 PRINCIPAL:1 ENSMUSG00000034883 Lrr1 ENSMUST00000222382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034883 Lrr1 ENSMUST00000110621 ENSMUSP00000106251 TRANSLATION protein_coding - CCDS36462.1 1 422.0 0.0 1.9 11.5 36.0 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000034883 Lrr1 ENSMUST00000222520 ENSMUSP00000152301 TRANSLATION protein_coding - - 1 107.0 0.0 0.1 0.1 0.0 0.0 -4,-6 0.0021 - 0.318 MINOR ENSMUSG00000041359 Tcl1 ENSMUST00000177521 ENSMUSP00000134903 TRANSLATION nonsense_mediated_decay - - 3 107.0 0.0 2.5 1.1 124.5 0.0 -4,-2 0.0186 - -2.0 MINOR ENSMUSG00000041359 Tcl1 ENSMUST00000176952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041359 Tcl1 ENSMUST00000041316 ENSMUSP00000036066 TRANSLATION protein_coding - CCDS36549.1 1 116.0 0.0 3.16 0.4 139.3 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041359 Tcl1 ENSMUST00000175652 ENSMUSP00000134811 TRANSLATION protein_coding - - 2 59.0 0.0 1.66 0.0 49.3 0.0 -4,-2 0.0 - 3.6 MINOR ENSMUSG00000041359 Tcl1 ENSMUST00000101071 ENSMUSP00000098632 TRANSLATION protein_coding - CCDS70418.1 1 193.0 0.0 2.5 0.0 121.9 0.0 -4,-2 0.0151 - 9.636 MINOR ENSMUSG00000041359 Tcl1 ENSMUST00000176579 ENSMUSP00000135069 TRANSLATION protein_coding - CCDS83999.1 2 91.0 0.0 1.9175 0.0 90.6 0.0 -4,-2 0.0061 - 6.594 MINOR ENSMUSG00000032705 Exd2 ENSMUST00000220239 - NO_TRANSLATION retained_intron ENSMUSG00000032705 Exd2 ENSMUST00000219272 ENSMUSP00000151717 TRANSLATION protein_coding stop - 2 112.0 0.0 1.83 0.0 28.8 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000032705 Exd2 ENSMUST00000219757 - NO_TRANSLATION retained_intron ENSMUSG00000032705 Exd2 ENSMUST00000219039 ENSMUSP00000151990 TRANSLATION nonsense_mediated_decay start - 5 20.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032705 Exd2 ENSMUST00000038185 ENSMUSP00000043049 TRANSLATION protein_coding - CCDS49098.1 1 650.0 3.0 3.065 0.1 57.2 0.0 1,-3 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000032705 Exd2 ENSMUST00000218565 - NO_TRANSLATION retained_intron ENSMUSG00000032705 Exd2 ENSMUST00000219477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043122 A530016L24Rik ENSMUST00000057465 ENSMUSP00000056220 TRANSLATION protein_coding - CCDS49188.1 1 165.0 0.0 0.0 0.0 187.2 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000043122 A530016L24Rik ENSMUST00000223266 ENSMUSP00000152594 TRANSLATION protein_coding - - 1 95.0 0.0 0.0 0.0 98.3 0.0 -4,-2 0.0 - 0.666 MINOR ENSMUSG00000060073 Psma3 ENSMUST00000162898 ENSMUSP00000125490 TRANSLATION protein_coding start - 5 55.0 0.0 1.5 0.0 36.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060073 Psma3 ENSMUST00000160683 - NO_TRANSLATION retained_intron ENSMUSG00000060073 Psma3 ENSMUST00000071704 ENSMUSP00000071624 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 1.08 0.0 56.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060073 Psma3 ENSMUST00000163035 - NO_TRANSLATION retained_intron ENSMUSG00000060073 Psma3 ENSMUST00000160864 ENSMUSP00000124894 TRANSLATION protein_coding - CCDS79119.1 5 180.0 0.0 5.41 1.8 123.0 0.0 -4,-5 0.0285 3 1.986 MINOR ENSMUSG00000060073 Psma3 ENSMUST00000162851 ENSMUSP00000124082 TRANSLATION nonsense_mediated_decay - - 3 52.0 0.0 1.08 0.0 56.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060073 Psma3 ENSMUST00000162626 ENSMUSP00000125739 TRANSLATION nonsense_mediated_decay - - 1 35.0 0.0 1.08 0.0 56.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060073 Psma3 ENSMUST00000161041 - NO_TRANSLATION retained_intron ENSMUSG00000060073 Psma3 ENSMUST00000160027 ENSMUSP00000125548 TRANSLATION protein_coding - CCDS25961.1 1 255.0 0.0 7.49 23.5 231.4 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000021139 Gm20498 ENSMUST00000110339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021139 Gm20498 ENSMUST00000170958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021139 Gm20498 ENSMUST00000166664 ENSMUSP00000131728 TRANSLATION protein_coding,RT - CCDS83981.1 2 182.0 0.0 4.1 1.7 135.3 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000021139 Gm20498 ENSMUST00000171459 ENSMUSP00000133042 TRANSLATION nonsense_mediated_decay,RT - - 3 40.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000021139 Gm20498 ENSMUST00000168961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021139 Gm20498 ENSMUST00000164386 ENSMUSP00000132941 TRANSLATION protein_coding,RT - CCDS83980.1 2 153.0 0.0 3.5 0.0 109.9 0.0 -4,-5 0.0086 - -2.0 ALTERNATIVE:2 ENSMUSG00000007682 Dio2 ENSMUST00000082432 ENSMUSP00000081013 TRANSLATION protein_coding - - 1 262.0 0.0 0.264 23.2 388.5 0.0 -3,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000112187 Gm6993 ENSMUST00000219110 ENSMUSP00000151468 TRANSLATION protein_coding - - - 69.0 0.0 1.0 7.1 33.3 0.0 -1,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000019718 L3hypdh ENSMUST00000138029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019718 L3hypdh ENSMUST00000019862 ENSMUSP00000019862 TRANSLATION protein_coding - CCDS25966.1 1 354.0 7.0 5.0 12.9 394.8 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000019718 L3hypdh ENSMUST00000124405 - NO_TRANSLATION retained_intron ENSMUSG00000095700 Ighv10-3 ENSMUST00000103495 ENSMUSP00000100276 TRANSLATION IG_V_gene stop - - 119.0 6.0 1.15 0.0 50.8 0.0 3,-2 0.8228 3 -2.0 PRINCIPAL:1 ENSMUSG00000021270 Hsp90aa1 ENSMUST00000145255 - NO_TRANSLATION retained_intron ENSMUSG00000021270 Hsp90aa1 ENSMUST00000129005 - NO_TRANSLATION retained_intron ENSMUSG00000021270 Hsp90aa1 ENSMUST00000155242 ENSMUSP00000118189 TRANSLATION protein_coding stop - 3 201.0 15.0 3.75 0.0 56.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021270 Hsp90aa1 ENSMUST00000124156 ENSMUSP00000121138 TRANSLATION protein_coding stop - 2 103.0 6.0 2.0 0.0 30.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021270 Hsp90aa1 ENSMUST00000094361 ENSMUSP00000091921 TRANSLATION protein_coding - CCDS26172.1 1 733.0 16.0 9.85 34.9 860.8 0.0 -4,-5 1.0 31 22.0 PRINCIPAL:1 ENSMUSG00000021270 Hsp90aa1 ENSMUST00000149189 ENSMUSP00000114201 TRANSLATION protein_coding stop - 2 98.0 6.0 2.0 0.0 24.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021270 Hsp90aa1 ENSMUST00000134967 - NO_TRANSLATION retained_intron ENSMUSG00000021270 Hsp90aa1 ENSMUST00000021698 ENSMUSP00000021698 TRANSLATION protein_coding - CCDS26172.1 5 733.0 16.0 9.85 34.9 860.8 0.0 -4,-5 1.0 31 22.0 PRINCIPAL:1 ENSMUSG00000095583 Ighv14-2 ENSMUST00000103467 ENSMUSP00000100248 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.0 1.0 53.8 0.0 4,-1 0.8333 1 -2.0 PRINCIPAL:1 ENSMUSG00000021276 Cinp ENSMUST00000223407 - NO_TRANSLATION retained_intron ENSMUSG00000021276 Cinp ENSMUST00000221102 ENSMUSP00000152445 TRANSLATION protein_coding - - 2 118.0 0.0 0.0 1.8 0.0 0.0 -4,-7 0.1413 2 0.2 MINOR ENSMUSG00000021276 Cinp ENSMUST00000220607 ENSMUSP00000152272 TRANSLATION protein_coding - - 1 262.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0304 3 0.0 MINOR ENSMUSG00000021276 Cinp ENSMUST00000221414 ENSMUSP00000152521 TRANSLATION protein_coding start - 3 84.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0194 - -2.0 MINOR ENSMUSG00000021276 Cinp ENSMUST00000223170 ENSMUSP00000152777 TRANSLATION nonsense_mediated_decay start - 3 116.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0208 2 -2.0 MINOR ENSMUSG00000021276 Cinp ENSMUST00000223079 ENSMUSP00000152278 TRANSLATION nonsense_mediated_decay - - 3 71.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0155 2 -2.0 MINOR ENSMUSG00000021276 Cinp ENSMUST00000043716 ENSMUSP00000035245 TRANSLATION protein_coding - CCDS36561.1 1 212.0 0.0 0.0 17.0 0.0 0.0 -4,-7 1.0 3 4.0 PRINCIPAL:1 ENSMUSG00000021276 Cinp ENSMUST00000221963 - NO_TRANSLATION retained_intron ENSMUSG00000021276 Cinp ENSMUST00000221901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021276 Cinp ENSMUST00000220631 - NO_TRANSLATION retained_intron ENSMUSG00000021276 Cinp ENSMUST00000221182 ENSMUSP00000152089 TRANSLATION protein_coding - - 3 139.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0087 1 0.0 MINOR ENSMUSG00000021276 Cinp ENSMUST00000222457 ENSMUSP00000152359 TRANSLATION protein_coding - - 2 145.0 0.0 0.0 0.1 0.0 0.0 -4,-7 0.032 2 0.0 MINOR ENSMUSG00000042523 Dnal1 ENSMUST00000046340 ENSMUSP00000037076 TRANSLATION protein_coding - CCDS83987.1 1 151.0 0.0 4.49 5.8 0.0 0.0 -4,-5 1.0 4 5.498 PRINCIPAL:2 ENSMUSG00000042523 Dnal1 ENSMUST00000143753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042523 Dnal1 ENSMUST00000140812 ENSMUSP00000121131 TRANSLATION protein_coding start - 5 81.0 0.0 1.33 0.0 0.0 0.0 -4,-7 0.0119 - -2.0 MINOR ENSMUSG00000042523 Dnal1 ENSMUST00000156138 ENSMUSP00000118584 TRANSLATION nonsense_mediated_decay - - 5 73.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000042523 Dnal1 ENSMUST00000143711 - NO_TRANSLATION retained_intron ENSMUSG00000042523 Dnal1 ENSMUST00000123491 ENSMUSP00000121038 TRANSLATION protein_coding - CCDS26039.2 2 190.0 0.0 5.74 0.0 0.0 0.0 -4,-5 0.6996 5 6.0 ALTERNATIVE:2 ENSMUSG00000042523 Dnal1 ENSMUST00000136159 ENSMUSP00000123497 TRANSLATION protein_coding - - 5 103.0 0.0 3.11 0.0 0.0 0.0 -4,-5 0.0015 4 0.738 MINOR ENSMUSG00000020545 Lrrc72 ENSMUST00000222145 - NO_TRANSLATION retained_intron ENSMUSG00000020545 Lrrc72 ENSMUST00000221155 ENSMUSP00000152732 TRANSLATION protein_coding - - 5 288.0 0.0 5.545 1.4 0.0 0.0 -4,-2 0.6974 - 7.0 PRINCIPAL:1 ENSMUSG00000020545 Lrrc72 ENSMUST00000221665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020545 Lrrc72 ENSMUST00000020853 ENSMUSP00000020853 TRANSLATION protein_coding - CCDS25886.1 1 106.0 0.0 0.8 0.4 0.0 0.0 -4,-5 0.1668 - 0.0 MINOR ENSMUSG00000035560 Wdr20rt ENSMUST00000046331 ENSMUSP00000036682 TRANSLATION protein_coding - CCDS25943.1 1 567.0 0.0 3.4 4.7 38.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035560 Wdr20rt ENSMUST00000221658 ENSMUSP00000152408 TRANSLATION protein_coding - - 5 366.0 0.0 3.0 0.0 38.8 0.0 -4,-5 0.0092 - 11.202 MINOR ENSMUSG00000035560 Wdr20rt ENSMUST00000222822 ENSMUSP00000152487 TRANSLATION protein_coding start - 1 466.0 0.0 2.4 0.0 38.8 0.0 -4,-6 0.01 - -2.0 MINOR ENSMUSG00000035560 Wdr20rt ENSMUST00000221980 ENSMUSP00000152626 TRANSLATION protein_coding - - 5 420.0 0.0 1.4 0.0 38.8 0.0 -4,-5 0.0226 - 7.998 MINOR ENSMUSG00000034111 Tmed8 ENSMUST00000037418 ENSMUSP00000043742 TRANSLATION protein_coding - CCDS26072.1 1 326.0 0.0 0.26 6.8 234.7 0.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000001496 Nkx2-1 ENSMUST00000001536 ENSMUSP00000001536 TRANSLATION protein_coding - CCDS25922.1 1 372.0 0.0 0.5 6.8 71.7 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000001496 Nkx2-1 ENSMUST00000178477 ENSMUSP00000136103 TRANSLATION protein_coding - CCDS25922.1 1 372.0 0.0 0.5 6.8 71.7 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000037957 Wdr20 ENSMUST00000191611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037957 Wdr20 ENSMUST00000191983 - NO_TRANSLATION retained_intron ENSMUSG00000037957 Wdr20 ENSMUST00000194118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037957 Wdr20 ENSMUST00000195886 ENSMUSP00000142157 TRANSLATION protein_coding start - 3 122.0 0.0 1.915 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037957 Wdr20 ENSMUST00000095410 ENSMUSP00000093059 TRANSLATION protein_coding - CCDS26173.1 1 569.0 0.0 3.15 6.9 37.3 0.0 -4,-5 1.0 6 14.01 PRINCIPAL:1 ENSMUSG00000037957 Wdr20 ENSMUST00000193053 ENSMUSP00000141678 TRANSLATION protein_coding - CCDS84002.1 1 161.0 0.0 2.75 9.8 0.0 0.0 -4,-5 0.7346 1 8.202 MINOR ENSMUSG00000037957 Wdr20 ENSMUST00000192870 ENSMUSP00000141887 TRANSLATION nonsense_mediated_decay - - 3 146.0 0.0 2.75 2.0 0.0 0.0 -4,-5 0.0537 1 -2.0 MINOR ENSMUSG00000020641 Rsad2 ENSMUST00000142732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020641 Rsad2 ENSMUST00000020970 ENSMUSP00000020970 TRANSLATION protein_coding - CCDS25848.1 1 362.0 15.0 5.13 4.9 59.0 1.0 1,-2 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000020641 Rsad2 ENSMUST00000137792 ENSMUSP00000121791 TRANSLATION nonsense_mediated_decay - - 1 187.0 15.0 1.8 0.0 39.2 1.0 1,-2 0.0039 - -2.0 MINOR ENSMUSG00000021262 Evl ENSMUST00000172409 ENSMUSP00000133072 TRANSLATION protein_coding - CCDS49169.1 1 401.0 0.0 3.245 4.9 167.4 0.0 -4,-5 0.3815 8 11.386 MINOR ENSMUSG00000021262 Evl ENSMUST00000222048 - NO_TRANSLATION retained_intron ENSMUSG00000021262 Evl ENSMUST00000077735 ENSMUSP00000076916 TRANSLATION protein_coding - CCDS26161.1 1 393.0 0.0 3.575 5.3 183.4 0.0 -4,-5 0.5622 10 13.11 MINOR ENSMUSG00000021262 Evl ENSMUST00000223109 ENSMUSP00000152364 TRANSLATION protein_coding stop - 1 426.0 0.0 3.08 0.0 149.8 0.0 -4,-5 0.0003 7 -2.0 MINOR ENSMUSG00000021262 Evl ENSMUST00000223548 ENSMUSP00000152440 TRANSLATION protein_coding start - 3 39.0 0.0 0.495 0.0 61.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021262 Evl ENSMUST00000109854 ENSMUSP00000105480 TRANSLATION protein_coding - CCDS49168.1 1 399.0 0.0 3.575 16.4 183.5 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000021262 Evl ENSMUST00000021689 ENSMUSP00000021689 TRANSLATION protein_coding - CCDS49167.1 1 414.0 0.0 3.575 6.2 183.4 0.0 -4,-5 0.5784 10 13.346 MINOR ENSMUSG00000036655 Colec11 ENSMUST00000220836 ENSMUSP00000152876 TRANSLATION protein_coding - - 1 278.0 9.0 2.63 24.6 89.5 0.0 3,-2 0.9221 3 17.82 ALTERNATIVE:1 ENSMUSG00000036655 Colec11 ENSMUST00000220655 ENSMUSP00000152207 TRANSLATION nonsense_mediated_decay - - 5 91.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0026 - -2.0 MINOR ENSMUSG00000036655 Colec11 ENSMUST00000036136 ENSMUSP00000049285 TRANSLATION protein_coding - CCDS36426.1 1 272.0 9.0 2.3 25.7 89.5 0.0 3,-2 1.0 3 17.25 PRINCIPAL:4 ENSMUSG00000021234 Fam161b ENSMUST00000133230 - NO_TRANSLATION retained_intron ENSMUSG00000021234 Fam161b ENSMUST00000126752 - NO_TRANSLATION retained_intron ENSMUSG00000021234 Fam161b ENSMUST00000065536 ENSMUSP00000070407 TRANSLATION protein_coding - CCDS26043.1 1 589.0 0.0 1.1 0.0 362.8 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000021234 Fam161b ENSMUST00000021659 ENSMUSP00000021659 TRANSLATION protein_coding - CCDS26043.1 1 589.0 0.0 1.1 0.0 362.8 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000093847 Eif1ad15 ENSMUST00000218054 ENSMUSP00000151971 TRANSLATION protein_coding - - 2 144.0 0.0 1.0 3.7 70.6 0.0 -4,-5 0.8152 - 13.0 PRINCIPAL:1 ENSMUSG00000034126 Pomt2 ENSMUST00000037788 ENSMUSP00000035260 TRANSLATION protein_coding - CCDS26070.1 1 820.0 0.0 18.6 5.0 563.2 10.0 -4,0 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000034126 Pomt2 ENSMUST00000222634 ENSMUSP00000152370 TRANSLATION nonsense_mediated_decay - - 2 603.0 0.0 14.798 0.0 429.4 6.0 -4,-1 0.0053 5 -2.0 MINOR ENSMUSG00000034126 Pomt2 ENSMUST00000222147 - NO_TRANSLATION retained_intron ENSMUSG00000034126 Pomt2 ENSMUST00000221252 - NO_TRANSLATION retained_intron ENSMUSG00000021057 Akap5 ENSMUST00000172992 ENSMUSP00000134127 TRANSLATION protein_coding - - 3 752.0 0.0 0.0 0.0 43.2 0.0 -4,-5 0.7606 21 2.0 PRINCIPAL:4 ENSMUSG00000021057 Akap5 ENSMUST00000095610 ENSMUSP00000093270 TRANSLATION protein_coding - - 1 752.0 0.0 0.0 0.0 43.2 0.0 -4,-5 0.7606 21 2.0 PRINCIPAL:4 ENSMUSG00000021057 Akap5 ENSMUST00000154078 ENSMUSP00000114495 TRANSLATION protein_coding - CCDS49092.1 1 745.0 0.0 0.0 0.0 43.2 0.0 -4,-5 0.5831 21 2.0 ALTERNATIVE:2 ENSMUSG00000041645 Ddx24 ENSMUST00000044923 ENSMUSP00000040890 TRANSLATION protein_coding - CCDS26129.1 1 857.0 13.0 3.475 1.1 218.2 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:2 ENSMUSG00000041645 Ddx24 ENSMUST00000222782 ENSMUSP00000152745 TRANSLATION protein_coding start/stop - 5 176.0 0.0 2.15 0.0 73.4 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000041645 Ddx24 ENSMUST00000223233 ENSMUSP00000152058 TRANSLATION protein_coding stop - 3 119.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041645 Ddx24 ENSMUST00000110001 ENSMUSP00000105628 TRANSLATION protein_coding - CCDS49152.1 1 903.0 13.0 3.475 0.0 218.2 0.0 -4,-7 0.3608 14 14.0 ALTERNATIVE:2 ENSMUSG00000041645 Ddx24 ENSMUST00000220705 - NO_TRANSLATION retained_intron ENSMUSG00000041645 Ddx24 ENSMUST00000221211 ENSMUSP00000152206 TRANSLATION protein_coding - - 1 791.0 13.0 3.475 0.0 218.2 0.0 -4,-5 0.0891 12 14.0 ALTERNATIVE:2 ENSMUSG00000041645 Ddx24 ENSMUST00000220481 - NO_TRANSLATION retained_intron ENSMUSG00000041645 Ddx24 ENSMUST00000222715 - NO_TRANSLATION retained_intron ENSMUSG00000041645 Ddx24 ENSMUST00000220975 ENSMUSP00000152366 TRANSLATION non_stop_decay stop - 1 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000090935 Synj2bp ENSMUST00000164431 ENSMUSP00000129053 TRANSLATION protein_coding - - 1 40.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - 1.524 MINOR ENSMUSG00000090935 Synj2bp ENSMUST00000019829 - NO_TRANSLATION retained_intron ENSMUSG00000090935 Synj2bp ENSMUST00000114201 ENSMUSP00000109839 TRANSLATION protein_coding - - 1 101.0 0.0 2.1 0.0 75.1 0.0 -4,-5 0.001 5 9.96 MINOR ENSMUSG00000090935 Synj2bp ENSMUST00000169158 ENSMUSP00000130691 TRANSLATION protein_coding - CCDS83979.1 1 118.0 0.0 2.85 0.0 79.2 0.0 -4,-5 0.096 6 11.796 MINOR ENSMUSG00000090935 Synj2bp ENSMUST00000163402 ENSMUSP00000129224 TRANSLATION protein_coding - CCDS26021.1 1 145.0 0.0 2.95 17.6 79.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000036523 Greb1 ENSMUST00000160575 - NO_TRANSLATION retained_intron ENSMUSG00000036523 Greb1 ENSMUST00000161998 ENSMUSP00000124275 TRANSLATION protein_coding stop - 3 151.0 0.0 0.0 0.0 286.2 0.0 -4,-7 0.0011 1 -2.0 MINOR ENSMUSG00000036523 Greb1 ENSMUST00000161036 - NO_TRANSLATION retained_intron ENSMUSG00000036523 Greb1 ENSMUST00000160347 ENSMUSP00000124897 TRANSLATION protein_coding start/stop - 5 121.0 0.0 0.0 0.0 194.4 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000036523 Greb1 ENSMUST00000160755 - NO_TRANSLATION retained_intron ENSMUSG00000036523 Greb1 ENSMUST00000159120 ENSMUSP00000125339 TRANSLATION protein_coding - CCDS56830.1 1 1926.0 10.0 0.0 0.0 3222.3 0.0 -4,-7 0.305 10 7.092 MINOR ENSMUSG00000036523 Greb1 ENSMUST00000162112 ENSMUSP00000124348 TRANSLATION protein_coding - CCDS36408.1 5 1954.0 10.0 0.0 2.2 3304.1 0.0 -4,-7 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000036523 Greb1 ENSMUST00000160851 - NO_TRANSLATION retained_intron ENSMUSG00000036523 Greb1 ENSMUST00000159573 - NO_TRANSLATION retained_intron ENSMUSG00000036523 Greb1 ENSMUST00000048064 ENSMUSP00000044454 TRANSLATION protein_coding - CCDS36408.1 1 1954.0 10.0 0.0 2.2 3304.1 0.0 -4,-7 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000036523 Greb1 ENSMUST00000160627 ENSMUSP00000124922 TRANSLATION nonsense_mediated_decay start - 3 123.0 0.0 0.0 0.0 129.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036523 Greb1 ENSMUST00000159044 - NO_TRANSLATION retained_intron ENSMUSG00000037594 Clba1 ENSMUST00000177808 ENSMUSP00000137263 TRANSLATION protein_coding - CCDS49192.1 1 321.0 0.0 0.0 2.1 126.4 0.0 -4,-5 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000037594 Clba1 ENSMUST00000037014 ENSMUSP00000038002 TRANSLATION protein_coding - CCDS49192.1 1 321.0 0.0 0.0 2.1 126.4 0.0 -4,-5 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000061911 Myt1l ENSMUST00000219231 - NO_TRANSLATION retained_intron ENSMUSG00000061911 Myt1l ENSMUST00000218198 ENSMUSP00000151919 TRANSLATION protein_coding - - 1 328.0 0.0 0.9 0.0 402.5 0.0 -4,-7 0.0004 5 0.0 MINOR ENSMUSG00000061911 Myt1l ENSMUST00000219899 - NO_TRANSLATION retained_intron ENSMUSG00000061911 Myt1l ENSMUST00000218583 ENSMUSP00000151588 TRANSLATION protein_coding - CCDS49041.1 1 1185.0 4.0 8.53 0.1 717.6 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000061911 Myt1l ENSMUST00000220072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061911 Myt1l ENSMUST00000049784 ENSMUSP00000058264 TRANSLATION protein_coding - CCDS49042.1 1 1187.0 4.0 8.53 0.1 717.6 0.0 -4,-5 0.8983 13 12.0 ALTERNATIVE:2 ENSMUSG00000061911 Myt1l ENSMUST00000219060 - NO_TRANSLATION retained_intron ENSMUSG00000061911 Myt1l ENSMUST00000217961 - NO_TRANSLATION retained_intron ENSMUSG00000061911 Myt1l ENSMUST00000219744 ENSMUSP00000151977 TRANSLATION protein_coding start - 3 189.0 4.0 3.5 0.0 89.2 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000061911 Myt1l ENSMUST00000219463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061911 Myt1l ENSMUST00000021009 ENSMUSP00000021009 TRANSLATION protein_coding - CCDS49041.1 1 1185.0 4.0 8.53 0.1 717.6 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000048856 Slc25a47 ENSMUST00000223296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048856 Slc25a47 ENSMUST00000057026 ENSMUSP00000050329 TRANSLATION protein_coding - CCDS26165.1 1 310.0 0.0 2.91 7.2 206.5 0.0 -3,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048856 Slc25a47 ENSMUST00000221453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048856 Slc25a47 ENSMUST00000221080 ENSMUSP00000152260 TRANSLATION protein_coding - - 1 219.0 0.0 1.91 0.0 129.1 0.0 -3,-6 0.0 - 5.292 MINOR ENSMUSG00000048856 Slc25a47 ENSMUST00000221787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095866 Ighv2-4 ENSMUST00000103447 ENSMUSP00000100228 TRANSLATION IG_V_gene stop - - 116.0 3.0 1.0 0.0 50.2 0.0 4,-1 0.833 - -2.0 PRINCIPAL:1 ENSMUSG00000054302 Eapp ENSMUST00000161592 ENSMUSP00000123698 TRANSLATION protein_coding - CCDS25910.1 1 281.0 0.0 0.0 9.4 182.2 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000054302 Eapp ENSMUST00000160085 ENSMUSP00000124699 TRANSLATION protein_coding - - 3 156.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000054302 Eapp ENSMUST00000067272 ENSMUSP00000069381 TRANSLATION protein_coding - - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000054302 Eapp ENSMUST00000110713 ENSMUSP00000106341 TRANSLATION protein_coding - - 1 243.0 0.0 0.0 1.2 99.2 0.0 -4,-5 0.0434 2 1.092 MINOR ENSMUSG00000054302 Eapp ENSMUST00000162106 ENSMUSP00000124232 TRANSLATION protein_coding stop - 5 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054894 Dmac2l ENSMUST00000222950 ENSMUSP00000152704 TRANSLATION protein_coding stop - 5 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0129 - -2.0 MINOR ENSMUSG00000054894 Dmac2l ENSMUST00000220539 ENSMUSP00000152071 TRANSLATION protein_coding stop - 3 34.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0013 1 -2.0 MINOR ENSMUSG00000054894 Dmac2l ENSMUST00000220460 ENSMUSP00000152757 TRANSLATION protein_coding stop - 5 135.0 3.0 2.68 0.0 0.0 0.0 -4,-7 0.0053 3 -2.0 MINOR ENSMUSG00000054894 Dmac2l ENSMUST00000220916 ENSMUSP00000152430 TRANSLATION protein_coding - CCDS25954.1 1 200.0 3.0 4.43 16.3 0.0 0.0 -4,-7 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000054894 Dmac2l ENSMUST00000021372 ENSMUSP00000021372 TRANSLATION protein_coding - CCDS25954.1 1 200.0 3.0 4.43 16.3 0.0 0.0 -4,-7 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000041712 Ubr7 ENSMUST00000046404 ENSMUSP00000041247 TRANSLATION protein_coding - CCDS26124.1 1 425.0 7.0 0.9 11.4 47.6 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000035954 Dock4 ENSMUST00000220912 ENSMUSP00000152420 TRANSLATION protein_coding - - 1 1940.0 0.0 15.939 1.1 919.5 0.0 -4,-5 0.4243 38 8.25 ALTERNATIVE:2 ENSMUSG00000035954 Dock4 ENSMUST00000222287 - NO_TRANSLATION retained_intron ENSMUSG00000035954 Dock4 ENSMUST00000223290 - NO_TRANSLATION retained_intron ENSMUSG00000035954 Dock4 ENSMUST00000037488 ENSMUSP00000047387 TRANSLATION protein_coding - CCDS25895.1 1 1978.0 0.0 15.939 1.4 919.5 0.0 -4,-5 1.0 39 9.0 PRINCIPAL:2 ENSMUSG00000035954 Dock4 ENSMUST00000222798 - NO_TRANSLATION retained_intron ENSMUSG00000035954 Dock4 ENSMUST00000221731 - NO_TRANSLATION retained_intron ENSMUSG00000035954 Dock4 ENSMUST00000220783 - NO_TRANSLATION retained_intron ENSMUSG00000035954 Dock4 ENSMUST00000222860 - NO_TRANSLATION retained_intron ENSMUSG00000035954 Dock4 ENSMUST00000221758 - NO_TRANSLATION retained_intron ENSMUSG00000035954 Dock4 ENSMUST00000220850 - NO_TRANSLATION retained_intron ENSMUSG00000035954 Dock4 ENSMUST00000221664 - NO_TRANSLATION retained_intron ENSMUSG00000095200 Ighv1-7 ENSMUST00000103496 ENSMUSP00000100277 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.033 1.0 62.4 0.0 4,-1 0.8329 - -2.0 PRINCIPAL:1 ENSMUSG00000041669 Prima1 ENSMUST00000156176 ENSMUSP00000123331 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000041669 Prima1 ENSMUST00000127843 ENSMUSP00000114309 TRANSLATION nonsense_mediated_decay - - 5 124.0 0.0 0.75 5.2 134.1 1.0 -1,-3 0.2728 - -2.0 MINOR ENSMUSG00000041669 Prima1 ENSMUST00000155547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041669 Prima1 ENSMUST00000123655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041669 Prima1 ENSMUST00000074416 ENSMUSP00000074017 TRANSLATION protein_coding - CCDS26127.1 1 153.0 0.0 0.75 12.3 202.0 1.0 -1,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000098530 Gm28051 ENSMUST00000179306 ENSMUSP00000136193 TRANSLATION protein_coding,RT - - 2 81.0 0.0 1.0 0.0 82.4 0.0 -4,-5 0.7741 - -2.0 PRINCIPAL:1 ENSMUSG00000035105 Egln3 ENSMUST00000039516 ENSMUSP00000041874 TRANSLATION protein_coding - CCDS25908.1 1 239.0 3.0 3.814 17.4 70.5 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000021203 Otub2 ENSMUST00000141055 - NO_TRANSLATION retained_intron ENSMUSG00000021203 Otub2 ENSMUST00000179684 ENSMUSP00000137162 TRANSLATION protein_coding - CCDS49150.1 5 323.0 0.0 4.75 0.0 252.8 0.0 -4,0 0.2091 5 11.91 MINOR ENSMUSG00000021203 Otub2 ENSMUST00000148371 ENSMUSP00000115673 TRANSLATION protein_coding start/stop - 3 142.0 0.0 2.75 0.0 92.9 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000021203 Otub2 ENSMUST00000021620 ENSMUSP00000021620 TRANSLATION protein_coding - CCDS36528.1 1 234.0 0.0 4.75 10.6 254.3 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000021203 Otub2 ENSMUST00000101094 ENSMUSP00000098655 TRANSLATION protein_coding - CCDS49150.1 1 323.0 0.0 4.75 0.0 252.8 0.0 -4,0 0.2091 5 11.91 MINOR ENSMUSG00000058207 Serpina3k ENSMUST00000043058 ENSMUSP00000042095 TRANSLATION protein_coding - CCDS36537.1 1 418.0 0.0 3.8 1.3 400.8 0.0 3,-2 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000035247 Hectd1 ENSMUST00000217804 - NO_TRANSLATION retained_intron ENSMUSG00000035247 Hectd1 ENSMUST00000042052 ENSMUSP00000046766 TRANSLATION protein_coding - CCDS49064.1 5 2610.0 0.0 8.446 10.7 438.8 0.0 -4,-7 1.0 60 15.0 PRINCIPAL:1 ENSMUSG00000035247 Hectd1 ENSMUST00000220098 - NO_TRANSLATION retained_intron ENSMUSG00000035247 Hectd1 ENSMUST00000218626 - NO_TRANSLATION retained_intron ENSMUSG00000113489 Ubl5b ENSMUST00000220528 ENSMUSP00000152141 TRANSLATION protein_coding - CCDS49125.1 - 73.0 0.0 1.0 31.9 25.3 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000096020 Ighv1-75 ENSMUST00000103544 ENSMUSP00000100325 TRANSLATION IG_V_gene stop - - 117.0 9.0 1.0 1.0 57.0 0.0 3,-2 0.8351 - -2.0 PRINCIPAL:1 ENSMUSG00000021258 Ccnk ENSMUST00000221167 ENSMUSP00000152784 TRANSLATION protein_coding - CCDS49165.1 1 582.0 0.0 5.65 10.4 81.5 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000021258 Ccnk ENSMUST00000101055 ENSMUSP00000098616 TRANSLATION protein_coding - CCDS49165.1 5 582.0 0.0 5.65 10.4 81.5 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000021258 Ccnk ENSMUST00000223363 - NO_TRANSLATION retained_intron ENSMUSG00000034271 Jdp2 ENSMUST00000177587 ENSMUSP00000136823 TRANSLATION protein_coding - CCDS26060.1 1 163.0 0.0 2.0 23.7 39.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000034271 Jdp2 ENSMUST00000222689 ENSMUSP00000152652 TRANSLATION protein_coding stop - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000034271 Jdp2 ENSMUST00000050687 ENSMUSP00000059724 TRANSLATION protein_coding - CCDS26060.1 1 163.0 0.0 2.0 23.7 39.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000034271 Jdp2 ENSMUST00000171754 ENSMUSP00000129985 TRANSLATION protein_coding - CCDS26060.1 1 163.0 0.0 2.0 23.7 39.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020622 Nt5c1b ENSMUST00000147323 ENSMUSP00000117869 TRANSLATION nonsense_mediated_decay - - 1 474.0 2.0 5.33 0.0 192.8 0.0 -4,-5 0.0004 6 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000219049 ENSMUSP00000151771 TRANSLATION nonsense_mediated_decay - - 5 269.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0019 3 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000217944 ENSMUSP00000151734 TRANSLATION protein_coding - - 5 615.0 4.0 6.33 0.0 344.6 0.0 -4,-6 0.0683 6 12.0 ALTERNATIVE:2 ENSMUSG00000020622 Nt5c1b ENSMUST00000220611 ENSMUSP00000152344 TRANSLATION nonsense_mediated_decay - - 5 452.0 2.0 5.33 0.0 192.8 0.0 -4,-5 0.0004 6 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000220257 ENSMUSP00000151627 TRANSLATION nonsense_mediated_decay - - 5 382.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000118657 ENSMUSP00000112694 TRANSLATION protein_coding - CCDS79106.1 1 555.0 4.0 6.33 0.0 344.6 0.0 -4,-5 0.3398 7 12.0 ALTERNATIVE:2 ENSMUSG00000020622 Nt5c1b ENSMUST00000218026 ENSMUSP00000151761 TRANSLATION nonsense_mediated_decay - - 5 280.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0019 3 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000002456 ENSMUSP00000002456 TRANSLATION protein_coding - CCDS25810.1 1 573.0 4.0 6.33 0.4 344.6 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:2 ENSMUSG00000020622 Nt5c1b ENSMUST00000223534 ENSMUSP00000152838 TRANSLATION protein_coding - - 5 557.0 4.0 6.33 0.0 344.6 0.0 -4,-5 0.1213 7 12.0 ALTERNATIVE:2 ENSMUSG00000020622 Nt5c1b ENSMUST00000218288 ENSMUSP00000151785 TRANSLATION protein_coding start - 5 495.0 4.0 6.33 0.0 344.6 0.0 -4,-1 0.1396 6 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000219826 ENSMUSP00000151401 TRANSLATION protein_coding - - 5 631.0 4.0 6.33 0.4 344.6 0.0 -4,-6 0.0763 6 12.0 ALTERNATIVE:2 ENSMUSG00000020622 Nt5c1b ENSMUST00000218339 ENSMUSP00000151618 TRANSLATION protein_coding - - 5 571.0 4.0 6.33 0.4 344.6 0.0 -4,-5 0.2867 7 12.0 ALTERNATIVE:2 ENSMUSG00000020622 Nt5c1b ENSMUST00000143739 ENSMUSP00000123105 TRANSLATION protein_coding - - 2 271.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0019 3 0.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000218327 ENSMUSP00000151288 TRANSLATION nonsense_mediated_decay - - 5 302.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0017 4 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000219292 ENSMUSP00000151376 TRANSLATION nonsense_mediated_decay - - 5 320.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0013 4 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000218551 ENSMUSP00000151779 TRANSLATION nonsense_mediated_decay - - 5 391.0 0.0 3.75 0.0 113.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000218287 ENSMUSP00000151984 TRANSLATION nonsense_mediated_decay - - 5 378.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000218417 ENSMUSP00000151433 TRANSLATION nonsense_mediated_decay - - 5 362.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000219630 ENSMUSP00000151584 TRANSLATION protein_coding start - 5 430.0 2.0 5.5 0.0 167.0 0.0 -4,-5 0.0013 2 -2.0 MINOR ENSMUSG00000020622 Nt5c1b ENSMUST00000218148 - NO_TRANSLATION retained_intron ENSMUSG00000076672 Ighv3-6 ENSMUST00000195124 ENSMUSP00000141343 TRANSLATION IG_V_gene stop - - 116.0 3.0 1.0 0.0 54.2 0.0 4,-1 0.833 - -2.0 PRINCIPAL:1 ENSMUSG00000036169 Sostdc1 ENSMUST00000041407 ENSMUSP00000040230 TRANSLATION protein_coding - CCDS25887.1 1 206.0 0.0 1.14 16.8 363.1 0.0 3,-1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021003 Galc ENSMUST00000222703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021003 Galc ENSMUST00000220501 - NO_TRANSLATION retained_intron ENSMUSG00000021003 Galc ENSMUST00000222042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021003 Galc ENSMUST00000221063 ENSMUSP00000152540 TRANSLATION protein_coding start - 1 491.0 3.0 10.75 0.0 288.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000021003 Galc ENSMUST00000021390 ENSMUSP00000021390 TRANSLATION protein_coding - CCDS36517.1 1 684.0 6.0 15.1 7.7 640.4 0.0 0,2 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000021003 Galc ENSMUST00000222379 - NO_TRANSLATION retained_intron ENSMUSG00000021003 Galc ENSMUST00000221322 - NO_TRANSLATION retained_intron ENSMUSG00000021266 Wars1 ENSMUST00000109848 ENSMUSP00000105474 TRANSLATION protein_coding - CCDS49171.1 1 475.0 20.0 8.6 22.8 148.5 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000021266 Wars1 ENSMUST00000161154 ENSMUSP00000124625 TRANSLATION protein_coding - CCDS26166.1 1 481.0 20.0 8.6 1.1 148.5 0.0 -4,-5 0.3185 24 18.02 MINOR ENSMUSG00000021266 Wars1 ENSMUST00000160974 - NO_TRANSLATION retained_intron ENSMUSG00000021266 Wars1 ENSMUST00000162748 ENSMUSP00000125102 TRANSLATION nonsense_mediated_decay - - 3 59.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021266 Wars1 ENSMUST00000160477 ENSMUSP00000124649 TRANSLATION nonsense_mediated_decay - - 1 39.0 0.0 1.0 0.0 29.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021266 Wars1 ENSMUST00000162952 - NO_TRANSLATION retained_intron ENSMUSG00000021266 Wars1 ENSMUST00000161410 ENSMUSP00000125320 TRANSLATION protein_coding - CCDS49171.1 1 475.0 20.0 8.6 22.8 148.5 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000036333 Kidins220 ENSMUST00000221050 - NO_TRANSLATION retained_intron ENSMUSG00000036333 Kidins220 ENSMUST00000220459 ENSMUSP00000152726 TRANSLATION protein_coding - - 1 1672.0 0.0 8.08 2.0 566.8 6.0 -4,-5 0.4116 34 10.386 MINOR ENSMUSG00000036333 Kidins220 ENSMUST00000221423 - NO_TRANSLATION retained_intron ENSMUSG00000036333 Kidins220 ENSMUST00000221622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036333 Kidins220 ENSMUST00000222481 ENSMUSP00000152752 TRANSLATION protein_coding start - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000036333 Kidins220 ENSMUST00000222013 ENSMUSP00000152399 TRANSLATION protein_coding start - 1 1182.0 0.0 4.68 0.0 480.8 6.0 -4,-6 0.023 27 -2.0 MINOR ENSMUSG00000036333 Kidins220 ENSMUST00000066652 ENSMUSP00000063999 TRANSLATION protein_coding - CCDS36424.1 5 1793.0 0.0 8.81 1.9 580.5 6.0 -4,-5 0.9403 34 12.6 MINOR ENSMUSG00000036333 Kidins220 ENSMUST00000220622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036333 Kidins220 ENSMUST00000222941 ENSMUSP00000152683 TRANSLATION protein_coding - - 5 1763.0 0.0 8.81 4.0 580.5 6.0 -4,-5 1.0 34 14.0 PRINCIPAL:1 ENSMUSG00000036333 Kidins220 ENSMUST00000221378 - NO_TRANSLATION retained_intron ENSMUSG00000046518 Ferd3l ENSMUST00000061035 ENSMUSP00000058994 TRANSLATION protein_coding - CCDS25878.1 - 168.0 0.0 0.8 9.4 61.5 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079007 Tcl1b4 ENSMUST00000000718 ENSMUSP00000000718 TRANSLATION protein_coding - CCDS36548.1 1 120.0 0.0 0.9 0.0 139.7 0.0 -4,-7 0.6534 - 8.0 ALTERNATIVE:2 ENSMUSG00000079007 Tcl1b4 ENSMUST00000222867 ENSMUSP00000152596 TRANSLATION protein_coding - - 1 121.0 0.0 0.9 0.0 139.7 0.0 -4,-7 0.7865 - 8.0 PRINCIPAL:4 ENSMUSG00000095981 Ighv10-1 ENSMUST00000103492 ENSMUSP00000100273 TRANSLATION IG_V_gene stop - - 119.0 6.0 1.0 0.0 49.3 0.0 3,-2 0.8261 3 -2.0 PRINCIPAL:1 ENSMUSG00000020657 Dnajc27 ENSMUST00000049584 ENSMUSP00000106803 TRANSLATION protein_coding - CCDS25786.1 2 273.0 17.0 6.25 29.8 188.2 0.0 -4,-6 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000020657 Dnajc27 ENSMUST00000219923 ENSMUSP00000151848 TRANSLATION nonsense_mediated_decay - CCDS25786.1 2 273.0 17.0 6.25 29.8 188.2 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000020657 Dnajc27 ENSMUST00000020986 ENSMUSP00000020986 TRANSLATION protein_coding - CCDS25786.1 1 273.0 17.0 6.25 29.8 188.2 0.0 -4,-6 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000020657 Dnajc27 ENSMUST00000220273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079034 Eif1ad8 ENSMUST00000110152 ENSMUSP00000105780 TRANSLATION protein_coding - CCDS49122.1 1 144.0 0.0 1.0 3.7 68.9 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000035431 Sstr1 ENSMUST00000110671 ENSMUSP00000106299 TRANSLATION protein_coding - CCDS36456.1 2 391.0 0.0 1.0 11.0 213.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058260 Serpina9 ENSMUST00000058464 ENSMUSP00000058535 TRANSLATION protein_coding - CCDS26144.1 1 418.0 0.0 3.73 1.4 383.4 0.0 -1,-4 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000058260 Serpina9 ENSMUST00000164023 ENSMUSP00000130064 TRANSLATION protein_coding stop - 3 205.0 0.0 0.8 0.0 151.0 0.0 -1,-4 0.0 4 -2.0 MINOR ENSMUSG00000056458 Mok ENSMUST00000177224 ENSMUSP00000135791 TRANSLATION protein_coding - - 1 99.0 7.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000056458 Mok ENSMUST00000084974 ENSMUSP00000082041 TRANSLATION protein_coding - - 1 236.0 4.0 3.05 0.0 119.5 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000056458 Mok ENSMUST00000021701 - NO_TRANSLATION retained_intron ENSMUSG00000056458 Mok ENSMUST00000070565 ENSMUSP00000068904 TRANSLATION protein_coding - CCDS49176.1 1 420.0 16.0 7.8 11.2 221.1 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000061458 Nol10 ENSMUST00000046011 ENSMUSP00000035930 TRANSLATION protein_coding - CCDS25828.1 1 687.0 0.0 0.0 20.2 46.4 0.0 -4,-5 1.0 13 10.0 PRINCIPAL:1 ENSMUSG00000094552 Ighd3-2 ENSMUST00000179883 ENSMUSP00000141970 TRANSLATION IG_D_gene start/stop - - 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000056553 Ptprn2 ENSMUST00000190247 ENSMUSP00000139978 TRANSLATION nonsense_mediated_decay - - 1 934.0 2.0 5.0 0.0 322.6 1.0 3,-2 0.0122 12 -2.0 MINOR ENSMUSG00000056553 Ptprn2 ENSMUST00000185505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056553 Ptprn2 ENSMUST00000070733 ENSMUSP00000064046 TRANSLATION protein_coding - CCDS36576.1 1 1001.0 11.0 7.25 0.0 392.8 1.0 3,-2 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000056553 Ptprn2 ENSMUST00000189009 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056553 Ptprn2 ENSMUST00000191106 - NO_TRANSLATION retained_intron ENSMUSG00000037361 Sf3b6 ENSMUST00000218650 - NO_TRANSLATION retained_intron ENSMUSG00000037361 Sf3b6 ENSMUST00000219128 ENSMUSP00000151723 TRANSLATION protein_coding start/stop - 3 111.0 0.0 2.3 0.0 57.5 0.0 -4,-5 0.0017 5 -2.0 MINOR ENSMUSG00000037361 Sf3b6 ENSMUST00000046207 ENSMUSP00000043662 TRANSLATION protein_coding - CCDS25791.1 1 125.0 0.0 2.948 35.1 57.5 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000037361 Sf3b6 ENSMUST00000219359 - NO_TRANSLATION retained_intron ENSMUSG00000037361 Sf3b6 ENSMUST00000218705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095612 Ighv5-4 ENSMUST00000103444 ENSMUSP00000100225 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.0 0.0 54.0 0.0 4,-1 0.8275 - -2.0 PRINCIPAL:1 ENSMUSG00000047832 Cdca4 ENSMUST00000223432 - NO_TRANSLATION retained_intron ENSMUSG00000047832 Cdca4 ENSMUST00000220899 ENSMUSP00000152315 TRANSLATION protein_coding - CCDS26198.1 1 237.0 0.0 0.4 5.6 62.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047832 Cdca4 ENSMUST00000062092 ENSMUSP00000058901 TRANSLATION protein_coding - CCDS26198.1 1 237.0 0.0 0.4 5.6 62.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047454 Gphn ENSMUST00000219629 - NO_TRANSLATION retained_intron ENSMUSG00000047454 Gphn ENSMUST00000110388 ENSMUSP00000106018 TRANSLATION protein_coding - CCDS49095.1 1 772.0 0.0 16.7 18.9 453.1 0.0 -4,-5 1.0 26 16.0 PRINCIPAL:1 ENSMUSG00000047454 Gphn ENSMUST00000052472 ENSMUSP00000054064 TRANSLATION protein_coding - CCDS26000.1 1 769.0 0.0 16.7 9.4 453.1 0.0 -4,-5 0.8773 27 13.876 MINOR ENSMUSG00000021036 Sptlc2 ENSMUST00000021424 ENSMUSP00000021424 TRANSLATION protein_coding - CCDS26076.1 1 560.0 12.0 11.0 11.8 195.4 0.0 -4,-6 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000021036 Sptlc2 ENSMUST00000170110 - NO_TRANSLATION retained_intron ENSMUSG00000021036 Sptlc2 ENSMUST00000169845 - NO_TRANSLATION retained_intron ENSMUSG00000021036 Sptlc2 ENSMUST00000170720 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021036 Sptlc2 ENSMUST00000167911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021127 Zfp36l1 ENSMUST00000218835 ENSMUSP00000151269 TRANSLATION protein_coding - - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000021127 Zfp36l1 ENSMUST00000219642 ENSMUSP00000151682 TRANSLATION protein_coding - - 3 84.0 0.0 0.0 0.0 24.4 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000021127 Zfp36l1 ENSMUST00000021552 ENSMUSP00000021552 TRANSLATION protein_coding - CCDS26010.1 1 338.0 8.0 0.5 15.4 188.7 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000103033 Ighv5-12-4 ENSMUST00000195381 ENSMUSP00000141539 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.25 0.0 52.9 0.0 1,-3 0.8286 - -2.0 PRINCIPAL:1 ENSMUSG00000095442 Ighv1-4 ENSMUST00000103493 ENSMUSP00000100274 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0825 1.0 58.0 0.0 4,-1 0.8313 - -2.0 PRINCIPAL:1 ENSMUSG00000021087 Rtn1 ENSMUST00000221756 - NO_TRANSLATION retained_intron ENSMUSG00000021087 Rtn1 ENSMUST00000078505 ENSMUSP00000077594 TRANSLATION protein_coding - CCDS25968.1 1 780.0 0.0 4.5 4.2 153.7 1.0 -4,-5 0.4955 18 12.452 MINOR ENSMUSG00000021087 Rtn1 ENSMUST00000137990 ENSMUSP00000120033 TRANSLATION protein_coding start - 1 253.0 0.0 4.5 0.0 153.7 1.0 -4,0 0.0425 6 -2.0 MINOR ENSMUSG00000021087 Rtn1 ENSMUST00000150156 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021087 Rtn1 ENSMUST00000021497 ENSMUSP00000021497 TRANSLATION protein_coding - CCDS25969.1 1 208.0 0.0 4.5 29.4 153.7 1.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000021087 Rtn1 ENSMUST00000144181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096410 Ighv1-19 ENSMUST00000193855 ENSMUSP00000141737 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.1 1.0 57.7 0.0 3,-2 0.8308 1 -2.0 PRINCIPAL:1 ENSMUSG00000020954 Strn3 ENSMUST00000169503 ENSMUSP00000130184 TRANSLATION protein_coding - CCDS49063.1 1 712.0 0.0 7.45 8.2 283.8 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000020954 Strn3 ENSMUST00000218212 - NO_TRANSLATION retained_intron ENSMUSG00000020954 Strn3 ENSMUST00000013130 ENSMUSP00000013130 TRANSLATION protein_coding - CCDS36440.1 1 796.0 0.0 7.45 6.5 283.8 0.0 -4,-5 0.8609 14 10.292 ALTERNATIVE:1 ENSMUSG00000020664 Dld ENSMUST00000219213 - NO_TRANSLATION retained_intron ENSMUSG00000020664 Dld ENSMUST00000110857 ENSMUSP00000106481 TRANSLATION protein_coding - CCDS36428.1 1 509.0 51.0 11.15 33.1 224.1 0.0 -4,0 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000020664 Dld ENSMUST00000218624 - NO_TRANSLATION retained_intron ENSMUSG00000020664 Dld ENSMUST00000220415 - NO_TRANSLATION retained_intron ENSMUSG00000021135 Slc10a1 ENSMUST00000095572 ENSMUSP00000093229 TRANSLATION protein_coding - CCDS49101.1 1 362.0 0.0 6.0 0.4 151.6 8.0 -4,-7 0.4584 2 8.0 ALTERNATIVE:2 ENSMUSG00000021135 Slc10a1 ENSMUST00000218162 ENSMUSP00000151555 TRANSLATION protein_coding - CCDS49101.1 1 362.0 0.0 6.0 0.4 151.6 8.0 -4,-7 0.4584 2 8.0 ALTERNATIVE:2 ENSMUSG00000021135 Slc10a1 ENSMUST00000220266 ENSMUSP00000151510 TRANSLATION nonsense_mediated_decay - - 3 66.0 0.0 1.0 0.0 0.0 2.0 -4,-7 0.0003 - -2.0 MINOR ENSMUSG00000021135 Slc10a1 ENSMUST00000218342 ENSMUSP00000151215 TRANSLATION protein_coding - - 1 317.0 0.0 6.0 0.0 151.6 8.0 -4,-7 0.7746 - 8.0 PRINCIPAL:2 ENSMUSG00000021287 Xrcc3 ENSMUST00000132177 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021287 Xrcc3 ENSMUST00000129258 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021287 Xrcc3 ENSMUST00000145109 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021287 Xrcc3 ENSMUST00000146491 - NO_TRANSLATION retained_intron ENSMUSG00000021287 Xrcc3 ENSMUST00000127281 ENSMUSP00000118040 TRANSLATION nonsense_mediated_decay - - 1 215.0 7.0 1.8375 0.0 68.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021287 Xrcc3 ENSMUST00000021715 ENSMUSP00000021715 TRANSLATION protein_coding - CCDS26187.1 1 349.0 7.0 3.216 4.4 131.1 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000021287 Xrcc3 ENSMUST00000133679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021287 Xrcc3 ENSMUST00000124064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004791 Pgf ENSMUST00000222850 - NO_TRANSLATION retained_intron ENSMUSG00000004791 Pgf ENSMUST00000223220 ENSMUSP00000152165 TRANSLATION protein_coding - - 1 162.0 0.0 2.032 0.0 88.4 0.0 0,-4 0.7554 1 8.0 PRINCIPAL:4 ENSMUSG00000004791 Pgf ENSMUST00000220985 - NO_TRANSLATION retained_intron ENSMUSG00000004791 Pgf ENSMUST00000004913 ENSMUSP00000004913 TRANSLATION protein_coding - CCDS49115.1 1 158.0 0.0 2.032 0.1 88.4 0.0 1,-3 0.6119 1 8.0 ALTERNATIVE:2 ENSMUSG00000095589 Ighv1-55 ENSMUST00000103526 ENSMUSP00000100307 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 59.4 0.0 4,-1 0.8343 1 -2.0 PRINCIPAL:1 ENSMUSG00000021102 Glrx5 ENSMUST00000223244 ENSMUSP00000152267 TRANSLATION protein_coding - - 5 118.0 9.0 1.3 0.0 35.7 0.0 -3,1 0.0 5 11.106 MINOR ENSMUSG00000021102 Glrx5 ENSMUST00000021522 ENSMUSP00000021522 TRANSLATION protein_coding - CCDS26154.1 1 152.0 12.0 2.0 10.4 66.8 0.0 -3,1 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000021102 Glrx5 ENSMUST00000220494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096568 Ighd2-3 ENSMUST00000177839 ENSMUSP00000142229 TRANSLATION IG_D_gene start/stop - - 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000047227 Gm527 ENSMUST00000220928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047227 Gm527 ENSMUST00000223388 ENSMUSP00000152061 TRANSLATION protein_coding stop - 5 249.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0333 - -2.0 MINOR ENSMUSG00000047227 Gm527 ENSMUST00000220993 ENSMUSP00000152672 TRANSLATION protein_coding - - 5 280.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.1127 - 0.024 MINOR ENSMUSG00000047227 Gm527 ENSMUST00000058135 ENSMUSP00000059435 TRANSLATION protein_coding - CCDS56841.1 1 310.0 0.0 0.0 16.9 0.0 0.0 -4,-5 1.0 - 4.0 PRINCIPAL:1 ENSMUSG00000021221 Dpf3 ENSMUST00000178756 ENSMUSP00000136280 TRANSLATION protein_coding - CCDS59574.1 1 378.0 22.0 6.3 28.6 170.5 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000021221 Dpf3 ENSMUST00000144237 ENSMUSP00000122004 TRANSLATION protein_coding start - 5 293.0 10.0 2.8 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000021221 Dpf3 ENSMUST00000147469 ENSMUSP00000122598 TRANSLATION protein_coding start - 5 314.0 22.0 5.3 0.0 44.5 0.0 -4,-7 0.001 5 -2.0 MINOR ENSMUSG00000021221 Dpf3 ENSMUST00000177959 ENSMUSP00000137477 TRANSLATION protein_coding - CCDS56846.1 1 356.0 10.0 3.8 4.9 126.0 0.0 -4,-5 0.1533 4 4.896 MINOR ENSMUSG00000021221 Dpf3 ENSMUST00000140327 ENSMUSP00000120700 TRANSLATION protein_coding start - 5 81.0 6.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021221 Dpf3 ENSMUST00000133282 ENSMUSP00000121199 TRANSLATION protein_coding start - 5 292.0 10.0 2.8 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000079177 Fam228a ENSMUST00000220075 - NO_TRANSLATION retained_intron ENSMUSG00000079177 Fam228a ENSMUST00000222363 ENSMUSP00000152506 TRANSLATION protein_coding - CCDS49018.1 1 299.0 0.0 1.9 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000079177 Fam228a ENSMUST00000220978 ENSMUSP00000152184 TRANSLATION protein_coding - - 5 286.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0799 - 4.422 MINOR ENSMUSG00000079177 Fam228a ENSMUST00000111154 ENSMUSP00000106784 TRANSLATION protein_coding - CCDS49018.1 1 299.0 0.0 1.9 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096824 Ighv2-7 ENSMUST00000103456 ENSMUSP00000100237 TRANSLATION IG_V_gene stop - - 116.0 3.0 1.0 0.0 46.7 0.0 4,-1 0.8309 - -2.0 PRINCIPAL:1 ENSMUSG00000002900 Lamb1 ENSMUST00000239496 ENSMUSP00000159366 TRANSLATION protein_coding - CCDS25862.1 - 1834.0 0.0 18.888 0.4 717.9 0.0 -4,-7 0.5518 45 12.0 MINOR ENSMUSG00000002900 Lamb1 ENSMUST00000172134 - NO_TRANSLATION retained_intron ENSMUSG00000002900 Lamb1 ENSMUST00000169088 ENSMUSP00000132778 TRANSLATION protein_coding - - 5 1786.0 0.0 18.888 17.3 717.9 0.0 4,-1 1.0 45 16.0 PRINCIPAL:1 ENSMUSG00000002900 Lamb1 ENSMUST00000169065 - NO_TRANSLATION retained_intron ENSMUSG00000002900 Lamb1 ENSMUST00000164009 - NO_TRANSLATION retained_intron ENSMUSG00000002900 Lamb1 ENSMUST00000164228 - NO_TRANSLATION retained_intron ENSMUSG00000002900 Lamb1 ENSMUST00000002979 ENSMUSP00000002979 TRANSLATION protein_coding - - 1 1786.0 0.0 18.888 17.3 717.9 0.0 4,-1 1.0 45 16.0 PRINCIPAL:1 ENSMUSG00000002900 Lamb1 ENSMUST00000170495 ENSMUSP00000132001 TRANSLATION protein_coding stop - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020973 Dnaaf2 ENSMUST00000021356 ENSMUSP00000021356 TRANSLATION protein_coding - CCDS25948.1 1 814.0 0.0 0.0 0.1 324.8 0.0 -4,-5 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000059436 Max ENSMUST00000219538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059436 Max ENSMUST00000218597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059436 Max ENSMUST00000110395 ENSMUSP00000106025 TRANSLATION protein_coding - CCDS36479.1 1 160.0 0.0 3.362 29.7 65.3 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000059436 Max ENSMUST00000218653 ENSMUSP00000151467 TRANSLATION nonsense_mediated_decay start - 1 14.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059436 Max ENSMUST00000217914 - NO_TRANSLATION retained_intron ENSMUSG00000059436 Max ENSMUST00000218640 ENSMUSP00000151710 TRANSLATION protein_coding - - 1 124.0 0.0 2.362 1.1 0.0 0.0 -4,-5 0.002 4 4.014 MINOR ENSMUSG00000059436 Max ENSMUST00000082136 ENSMUSP00000080778 TRANSLATION protein_coding - CCDS49094.1 1 151.0 0.0 3.23 29.7 65.3 0.0 -4,-5 0.9423 6 11.736 ALTERNATIVE:1 ENSMUSG00000001627 Ifrd1 ENSMUST00000164047 ENSMUSP00000127553 TRANSLATION protein_coding start - 3 86.0 0.0 2.5 0.0 119.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000001627 Ifrd1 ENSMUST00000165027 ENSMUSP00000133028 TRANSLATION protein_coding - - 5 401.0 0.0 9.35 10.9 455.4 0.0 -4,-5 0.7634 5 10.19 ALTERNATIVE:1 ENSMUSG00000001627 Ifrd1 ENSMUST00000164354 ENSMUSP00000130846 TRANSLATION protein_coding stop - 3 86.0 0.0 1.6 0.0 90.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000001627 Ifrd1 ENSMUST00000001672 ENSMUSP00000001672 TRANSLATION protein_coding - CCDS25893.1 1 449.0 0.0 9.35 11.4 465.5 0.0 -4,-7 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000001627 Ifrd1 ENSMUST00000169319 ENSMUSP00000130824 TRANSLATION protein_coding stop - 3 100.0 0.0 2.1 0.0 109.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000001627 Ifrd1 ENSMUST00000171530 ENSMUSP00000128635 TRANSLATION nonsense_mediated_decay - - 5 148.0 0.0 1.6 0.0 100.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000001627 Ifrd1 ENSMUST00000171553 - NO_TRANSLATION retained_intron ENSMUSG00000001627 Ifrd1 ENSMUST00000169926 ENSMUSP00000127673 TRANSLATION protein_coding stop - 5 138.0 0.0 3.1 0.0 161.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001627 Ifrd1 ENSMUST00000170752 - NO_TRANSLATION retained_intron ENSMUSG00000001627 Ifrd1 ENSMUST00000170119 - NO_TRANSLATION retained_intron ENSMUSG00000095285 Ighv5-9 ENSMUST00000103448 ENSMUSP00000100229 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.0 1.0 51.6 0.0 4,-1 0.8333 2 -2.0 PRINCIPAL:1 ENSMUSG00000021275 Tecpr2 ENSMUST00000169597 ENSMUSP00000126749 TRANSLATION protein_coding - CCDS36562.1 1 1423.0 0.0 0.85 0.4 103.3 0.0 -4,-7 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000021275 Tecpr2 ENSMUST00000223246 - NO_TRANSLATION retained_intron ENSMUSG00000021275 Tecpr2 ENSMUST00000221605 - NO_TRANSLATION retained_intron ENSMUSG00000021275 Tecpr2 ENSMUST00000223210 ENSMUSP00000152826 TRANSLATION nonsense_mediated_decay - - 1 363.0 0.0 0.85 0.0 0.0 0.0 -4,-7 0.0487 9 -2.0 MINOR ENSMUSG00000021275 Tecpr2 ENSMUST00000165978 ENSMUSP00000127949 TRANSLATION protein_coding - CCDS36562.1 1 1423.0 0.0 0.85 0.4 103.3 0.0 -4,-7 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000021294 Kif26a ENSMUST00000128402 ENSMUSP00000119482 TRANSLATION protein_coding - CCDS49186.1 1 1881.0 10.0 2.85 0.4 179.9 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000021294 Kif26a ENSMUST00000183816 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094102 Ighv9-2 ENSMUST00000103472 ENSMUSP00000100253 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 1.0 49.7 0.0 4,-1 0.8325 - -2.0 PRINCIPAL:1 ENSMUSG00000044147 Arf6 ENSMUST00000050063 ENSMUSP00000055862 TRANSLATION protein_coding - CCDS25952.1 1 175.0 19.0 1.0 36.9 262.1 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000040867 Begain ENSMUST00000209829 ENSMUSP00000148247 TRANSLATION protein_coding - - 5 824.0 0.0 3.5 0.0 0.0 0.0 -4,-7 0.1136 17 6.0 ALTERNATIVE:2 ENSMUSG00000040867 Begain ENSMUST00000190647 ENSMUSP00000140393 TRANSLATION protein_coding - CCDS56862.1 1 619.0 0.0 3.5 0.3 0.0 0.0 -4,-2 1.0 17 6.0 PRINCIPAL:2 ENSMUSG00000040867 Begain ENSMUST00000187230 - NO_TRANSLATION retained_intron ENSMUSG00000040867 Begain ENSMUST00000185745 ENSMUSP00000159014 TRANSLATION protein_coding stop - 3 98.0 0.0 1.75 0.0 0.0 0.0 -3,-5 0.0042 2 -2.0 MINOR ENSMUSG00000040867 Begain ENSMUST00000238841 ENSMUSP00000158999 TRANSLATION protein_coding - - - 600.0 0.0 3.5 0.3 0.0 0.0 -4,-5 0.1224 17 6.0 ALTERNATIVE:2 ENSMUSG00000040867 Begain ENSMUST00000239108 ENSMUSP00000159072 TRANSLATION protein_coding - - - 613.0 0.0 3.5 0.3 0.0 0.0 -4,-5 0.1852 17 6.0 ALTERNATIVE:2 ENSMUSG00000066438 Plekhd1 ENSMUST00000152465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066438 Plekhd1 ENSMUST00000140770 ENSMUSP00000119711 TRANSLATION protein_coding - CCDS49100.1 1 505.0 12.0 5.575 12.5 42.5 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000066438 Plekhd1 ENSMUST00000153762 - NO_TRANSLATION retained_intron ENSMUSG00000066438 Plekhd1 ENSMUST00000142760 ENSMUSP00000121812 TRANSLATION nonsense_mediated_decay start - 3 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0209 - -2.0 MINOR ENSMUSG00000076733 Ighv8-13 ENSMUST00000164041 ENSMUSP00000129008 TRANSLATION IG_V_gene start/stop - - 99.0 3.0 1.0 0.0 53.0 0.0 -4,-5 0.1606 - -2.0 ALTERNATIVE:2 ENSMUSG00000076733 Ighv8-13 ENSMUST00000103542 ENSMUSP00000100323 TRANSLATION IG_V_gene start/stop - - 101.0 3.0 1.0 0.0 53.0 0.0 -4,-5 0.7723 - -2.0 PRINCIPAL:5 ENSMUSG00000094134 Ighv5-15 ENSMUST00000192877 ENSMUSP00000141493 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 44.2 0.0 4,-1 0.8285 1 -2.0 PRINCIPAL:1 ENSMUSG00000102888 Ighv1-11 ENSMUST00000191801 ENSMUSP00000141570 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 1.0 42.9 0.0 3,-2 0.8307 2 -2.0 PRINCIPAL:1 ENSMUSG00000042734 Ttc9 ENSMUST00000036116 ENSMUSP00000048590 TRANSLATION protein_coding - CCDS26024.1 1 219.0 0.0 0.696 5.5 27.9 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000042734 Ttc9 ENSMUST00000218362 ENSMUSP00000152038 TRANSLATION protein_coding - CCDS26024.1 1 219.0 0.0 0.696 5.5 27.9 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000092305 Prps1l1 ENSMUST00000134550 ENSMUSP00000133931 TRANSLATION protein_coding - CCDS56836.1 - 318.0 12.0 1.0 36.9 281.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000020573 Pik3cg ENSMUST00000156904 ENSMUSP00000123539 TRANSLATION nonsense_mediated_decay - CCDS25870.1 1 1102.0 21.0 9.08 19.5 571.4 0.0 -4,-5 1.0 9 -2.0 MINOR ENSMUSG00000020573 Pik3cg ENSMUST00000126814 - NO_TRANSLATION retained_intron ENSMUSG00000020573 Pik3cg ENSMUST00000217915 ENSMUSP00000152007 TRANSLATION protein_coding - - 1 1024.0 21.0 8.245 0.0 544.3 0.0 -4,-5 0.017 8 14.706 MINOR ENSMUSG00000020573 Pik3cg ENSMUST00000053215 ENSMUSP00000062864 TRANSLATION protein_coding - CCDS25870.1 1 1102.0 21.0 9.08 19.5 571.4 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020573 Pik3cg ENSMUST00000085469 ENSMUSP00000082596 TRANSLATION protein_coding - CCDS25870.1 1 1102.0 21.0 9.08 19.5 571.4 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020573 Pik3cg ENSMUST00000220366 ENSMUSP00000151400 TRANSLATION protein_coding - CCDS25870.1 1 1102.0 21.0 9.08 19.5 571.4 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000020573 Pik3cg ENSMUST00000218848 - NO_TRANSLATION retained_intron ENSMUSG00000049882 Vcpkmt ENSMUST00000058639 ENSMUSP00000055002 TRANSLATION protein_coding - CCDS36464.1 1 228.0 11.0 4.5 9.0 187.0 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000049882 Vcpkmt ENSMUST00000238784 ENSMUSP00000158802 TRANSLATION nonsense_mediated_decay - - - 123.0 6.0 1.75 0.0 106.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000049882 Vcpkmt ENSMUST00000238563 - NO_TRANSLATION retained_intron ENSMUSG00000049882 Vcpkmt ENSMUST00000238319 - NO_TRANSLATION retained_intron ENSMUSG00000049882 Vcpkmt ENSMUST00000238220 ENSMUSP00000158858 TRANSLATION nonsense_mediated_decay - - - 93.0 4.0 1.0 0.0 69.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000047415 Gpr68 ENSMUST00000128306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047415 Gpr68 ENSMUST00000110065 ENSMUSP00000105692 TRANSLATION protein_coding - CCDS26109.1 1 365.0 0.0 1.0 3.2 138.2 6.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000047415 Gpr68 ENSMUST00000053668 ENSMUSP00000057510 TRANSLATION protein_coding - CCDS26109.1 2 365.0 0.0 1.0 3.2 138.2 6.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000047415 Gpr68 ENSMUST00000124459 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047415 Gpr68 ENSMUST00000135684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047415 Gpr68 ENSMUST00000110066 ENSMUSP00000105693 TRANSLATION protein_coding - CCDS26109.1 3 365.0 0.0 1.0 3.2 138.2 6.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000047415 Gpr68 ENSMUST00000222453 - NO_TRANSLATION retained_intron ENSMUSG00000035021 Baz1a ENSMUST00000174225 ENSMUSP00000133324 TRANSLATION nonsense_mediated_decay start - 2 79.0 0.0 0.0 0.0 29.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035021 Baz1a ENSMUST00000173433 ENSMUSP00000133478 TRANSLATION protein_coding - CCDS56838.1 5 1552.0 8.0 3.5 5.7 421.6 0.0 -4,-7 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000035021 Baz1a ENSMUST00000173177 ENSMUSP00000133796 TRANSLATION protein_coding stop - 2 86.0 0.0 0.0 0.0 82.8 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000035021 Baz1a ENSMUST00000173529 ENSMUSP00000134445 TRANSLATION protein_coding stop - 2 81.0 0.0 0.0 0.0 76.8 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000035021 Baz1a ENSMUST00000173453 - NO_TRANSLATION retained_intron ENSMUSG00000035021 Baz1a ENSMUST00000172875 ENSMUSP00000134384 TRANSLATION protein_coding stop - 3 172.0 0.0 0.0 0.0 119.1 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000035021 Baz1a ENSMUST00000173176 ENSMUSP00000134207 TRANSLATION nonsense_mediated_decay start - 3 91.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079015 Serpina1c ENSMUST00000074051 ENSMUSP00000073695 TRANSLATION protein_coding - CCDS26141.1 1 413.0 0.0 4.0 6.9 397.4 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000021125 Arg2 ENSMUST00000021550 ENSMUSP00000021550 TRANSLATION protein_coding - CCDS26007.1 1 354.0 6.0 7.35 17.0 259.9 0.0 -4,0 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000095799 Eif1ad10 ENSMUST00000179468 ENSMUSP00000136709 TRANSLATION protein_coding - - - 144.0 0.0 1.0 3.7 68.9 0.0 -4,-5 0.8152 - 13.0 PRINCIPAL:1 ENSMUSG00000020591 Ntsr2 ENSMUST00000221049 ENSMUSP00000152592 TRANSLATION protein_coding start - 1 236.0 0.0 2.2 0.0 75.0 5.0 -4,-7 0.0051 1 -2.0 MINOR ENSMUSG00000020591 Ntsr2 ENSMUST00000221596 ENSMUSP00000152110 TRANSLATION protein_coding stop - 5 281.0 0.0 2.95 0.0 96.4 6.0 -4,-7 0.0033 1 -2.0 MINOR ENSMUSG00000020591 Ntsr2 ENSMUST00000222957 - NO_TRANSLATION retained_intron ENSMUSG00000020591 Ntsr2 ENSMUST00000220892 ENSMUSP00000152290 TRANSLATION protein_coding - - 3 281.0 0.0 2.4 0.1 100.3 8.0 -4,-7 0.0074 1 4.482 MINOR ENSMUSG00000020591 Ntsr2 ENSMUST00000111064 ENSMUSP00000106693 TRANSLATION protein_coding - CCDS36407.1 1 416.0 0.0 5.05 2.3 137.3 10.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000035653 Lrfn5 ENSMUST00000130887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035653 Lrfn5 ENSMUST00000189933 - NO_TRANSLATION retained_intron ENSMUSG00000035653 Lrfn5 ENSMUST00000055815 ENSMUSP00000051546 TRANSLATION protein_coding - CCDS25936.1 1 746.0 0.0 1.0 0.0 138.5 1.0 4,-1 0.4148 10 12.0 MINOR ENSMUSG00000035653 Lrfn5 ENSMUST00000138980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035653 Lrfn5 ENSMUST00000119481 ENSMUSP00000113123 TRANSLATION protein_coding - CCDS79117.1 1 719.0 0.0 1.0 11.8 138.5 1.0 4,-1 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000020949 Fkbp3 ENSMUST00000221710 - NO_TRANSLATION retained_intron ENSMUSG00000020949 Fkbp3 ENSMUST00000021332 ENSMUSP00000021332 TRANSLATION protein_coding - CCDS25940.1 1 224.0 0.0 7.07 27.8 107.0 0.0 -4,-6 1.0 12 15.964 PRINCIPAL:1 ENSMUSG00000020949 Fkbp3 ENSMUST00000220730 ENSMUSP00000152500 TRANSLATION protein_coding - - 5 188.0 0.0 6.07 0.0 107.6 0.0 -4,-6 0.0026 10 10.002 MINOR ENSMUSG00000020949 Fkbp3 ENSMUST00000223167 - NO_TRANSLATION retained_intron ENSMUSG00000020949 Fkbp3 ENSMUST00000221608 ENSMUSP00000152312 TRANSLATION protein_coding start - 3 88.0 0.0 2.91 0.0 84.1 0.0 -4,-5 0.0008 6 -2.0 MINOR ENSMUSG00000020949 Fkbp3 ENSMUST00000221913 ENSMUSP00000152380 TRANSLATION nonsense_mediated_decay start - 3 82.0 0.0 0.0 0.0 0.0 0.0 -3,1 0.0004 - -2.0 MINOR ENSMUSG00000020949 Fkbp3 ENSMUST00000221166 ENSMUSP00000152766 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 2.08 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000020949 Fkbp3 ENSMUST00000222684 - NO_TRANSLATION retained_intron ENSMUSG00000020949 Fkbp3 ENSMUST00000222467 - NO_TRANSLATION retained_intron ENSMUSG00000020949 Fkbp3 ENSMUST00000221706 - NO_TRANSLATION retained_intron ENSMUSG00000020949 Fkbp3 ENSMUST00000220957 - NO_TRANSLATION retained_intron ENSMUSG00000020949 Fkbp3 ENSMUST00000220983 ENSMUSP00000152733 TRANSLATION protein_coding start - 5 149.0 0.0 4.41 0.0 56.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000020978 Klhdc2 ENSMUST00000151571 - NO_TRANSLATION retained_intron ENSMUSG00000020978 Klhdc2 ENSMUST00000154667 - NO_TRANSLATION retained_intron ENSMUSG00000020978 Klhdc2 ENSMUST00000138585 - NO_TRANSLATION retained_intron ENSMUSG00000020978 Klhdc2 ENSMUST00000021362 ENSMUSP00000021362 TRANSLATION protein_coding - CCDS25950.1 1 406.0 0.0 10.55 16.5 57.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000076618 Ighj4 ENSMUST00000103427 ENSMUSP00000141935 TRANSLATION IG_J_gene start/stop - - 18.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000084883 Ccdc85c ENSMUST00000136175 ENSMUSP00000125757 TRANSLATION protein_coding - - 5 433.0 0.0 0.6 1.9 318.6 0.0 -3,-6 0.3844 5 12.418 MINOR ENSMUSG00000084883 Ccdc85c ENSMUST00000222310 ENSMUSP00000152421 TRANSLATION protein_coding - CCDS49166.1 5 420.0 0.0 0.6 5.3 318.6 0.0 -3,-6 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000021277 Traf3 ENSMUST00000143395 - NO_TRANSLATION retained_intron ENSMUSG00000021277 Traf3 ENSMUST00000117269 ENSMUSP00000112517 TRANSLATION protein_coding - CCDS36563.1 1 542.0 12.0 4.4 5.7 82.2 0.0 -4,-5 0.5857 18 19.234 MINOR ENSMUSG00000021277 Traf3 ENSMUST00000060274 ENSMUSP00000058361 TRANSLATION protein_coding - CCDS36563.1 5 542.0 12.0 4.4 5.7 82.2 0.0 -4,-5 0.5857 18 19.234 MINOR ENSMUSG00000021277 Traf3 ENSMUST00000139162 ENSMUSP00000119010 TRANSLATION protein_coding stop - 3 97.0 9.0 1.3 0.0 25.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021277 Traf3 ENSMUST00000021706 ENSMUSP00000021706 TRANSLATION protein_coding - CCDS26175.1 1 567.0 12.0 4.52375 13.7 82.2 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000063450 Syne2 ENSMUST00000131480 ENSMUSP00000114364 TRANSLATION protein_coding stop - 2 269.0 0.0 0.0 0.0 55.9 0.0 -4,-5 0.0006 4 -2.0 MINOR ENSMUSG00000063450 Syne2 ENSMUST00000133623 - NO_TRANSLATION retained_intron ENSMUSG00000063450 Syne2 ENSMUST00000132161 ENSMUSP00000122781 TRANSLATION nonsense_mediated_decay start - 1 733.0 0.0 0.0 0.0 97.0 0.0 -4,-5 0.0085 10 -2.0 MINOR ENSMUSG00000063450 Syne2 ENSMUST00000085280 ENSMUSP00000082383 TRANSLATION protein_coding start - 1 2152.0 0.0 0.6 0.0 224.2 1.0 -4,-7 0.0631 45 -2.0 MINOR ENSMUSG00000063450 Syne2 ENSMUST00000150317 ENSMUSP00000118142 TRANSLATION protein_coding stop - 5 528.0 0.0 5.03 0.0 149.1 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000063450 Syne2 ENSMUST00000154762 - NO_TRANSLATION retained_intron ENSMUSG00000063450 Syne2 ENSMUST00000142864 ENSMUSP00000119268 TRANSLATION protein_coding stop - 3 112.0 0.0 2.48 0.0 44.3 0.0 -4,-5 0.0069 1 -2.0 MINOR ENSMUSG00000063450 Syne2 ENSMUST00000124685 - NO_TRANSLATION retained_intron ENSMUSG00000063450 Syne2 ENSMUST00000148825 ENSMUSP00000120371 TRANSLATION protein_coding start/stop - 3 195.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000063450 Syne2 ENSMUST00000044217 ENSMUSP00000047697 TRANSLATION protein_coding - CCDS49091.1 5 6874.0 0.0 9.43 0.0 373.3 1.0 -4,-5 1.0 140 8.0 PRINCIPAL:2 ENSMUSG00000063450 Syne2 ENSMUST00000157033 - NO_TRANSLATION retained_intron ENSMUSG00000063450 Syne2 ENSMUST00000154509 ENSMUSP00000116718 TRANSLATION protein_coding stop - 5 125.0 0.0 0.0 0.0 42.0 0.0 -4,-6 0.0008 1 -2.0 MINOR ENSMUSG00000063450 Syne2 ENSMUST00000148324 ENSMUSP00000121517 TRANSLATION protein_coding stop - 3 82.0 0.0 1.55 0.0 32.9 0.0 -4,-5 0.017 1 -2.0 MINOR ENSMUSG00000063450 Syne2 ENSMUST00000151286 - NO_TRANSLATION retained_intron ENSMUSG00000063450 Syne2 ENSMUST00000126903 ENSMUSP00000115053 TRANSLATION nonsense_mediated_decay - - 3 74.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.02 - -2.0 MINOR ENSMUSG00000063450 Syne2 ENSMUST00000139204 ENSMUSP00000118921 TRANSLATION protein_coding start - 5 1644.0 0.0 0.6 0.0 224.2 1.0 -4,-5 0.0283 32 -2.0 MINOR ENSMUSG00000063450 Syne2 ENSMUST00000143031 ENSMUSP00000119120 TRANSLATION protein_coding - - 5 6870.0 0.0 9.43 0.0 373.3 1.0 -4,-5 0.7103 141 8.0 ALTERNATIVE:2 ENSMUSG00000076668 Ighv7-4 ENSMUST00000192499 ENSMUSP00000142041 TRANSLATION IG_V_gene stop - - 121.0 3.0 1.0 0.0 58.4 0.0 4,-1 0.8323 5 -2.0 PRINCIPAL:1 ENSMUSG00000002996 Hbp1 ENSMUST00000167458 ENSMUSP00000131983 TRANSLATION protein_coding - CCDS25868.2 1 474.0 0.0 5.95 0.0 114.6 0.0 -4,-5 0.0066 2 6.738 MINOR ENSMUSG00000002996 Hbp1 ENSMUST00000172314 ENSMUSP00000131158 TRANSLATION protein_coding - CCDS25867.2 1 526.0 0.0 6.95 13.3 169.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000002996 Hbp1 ENSMUST00000176103 ENSMUSP00000135508 TRANSLATION protein_coding - - 1 271.0 0.0 1.85 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000002996 Hbp1 ENSMUST00000175666 - NO_TRANSLATION retained_intron ENSMUSG00000002996 Hbp1 ENSMUST00000176643 ENSMUSP00000135537 TRANSLATION protein_coding start/stop - 3 256.0 0.0 3.1 0.0 97.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002996 Hbp1 ENSMUST00000176138 - NO_TRANSLATION retained_intron ENSMUSG00000002996 Hbp1 ENSMUST00000175686 ENSMUSP00000135080 TRANSLATION protein_coding - - 1 375.0 0.0 4.35 0.0 114.6 0.0 -4,-6 0.0003 - 3.534 MINOR ENSMUSG00000002996 Hbp1 ENSMUST00000176520 ENSMUSP00000135155 TRANSLATION protein_coding stop - 5 288.0 0.0 2.85 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000002996 Hbp1 ENSMUST00000176084 ENSMUSP00000135489 TRANSLATION protein_coding stop - 3 230.0 0.0 1.1 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048118 Arid4a ENSMUST00000134718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048118 Arid4a ENSMUST00000125125 ENSMUSP00000121109 TRANSLATION protein_coding stop - 1 295.0 0.0 7.8 0.0 117.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000048118 Arid4a ENSMUST00000046305 ENSMUSP00000035512 TRANSLATION protein_coding - CCDS36471.1 5 1261.0 0.0 12.715 7.5 236.3 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000048118 Arid4a ENSMUST00000135709 ENSMUSP00000121319 TRANSLATION protein_coding stop - 1 531.0 0.0 4.15 0.0 100.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021133 Susd6 ENSMUST00000068519 ENSMUSP00000064961 TRANSLATION protein_coding - CCDS26016.1 1 302.0 0.0 0.0 14.7 34.9 1.0 -1,-5 1.0 1 7.588 MINOR ENSMUSG00000021133 Susd6 ENSMUST00000219720 - NO_TRANSLATION retained_intron ENSMUSG00000021133 Susd6 ENSMUST00000220238 ENSMUSP00000151831 TRANSLATION protein_coding - - 1 323.0 0.0 0.6 0.1 58.4 1.0 -4,-7 0.5334 1 12.0 PRINCIPAL:1 ENSMUSG00000020674 Pxdn ENSMUST00000220271 ENSMUSP00000151320 TRANSLATION protein_coding - - 5 1295.0 25.0 8.502 5.1 967.3 0.0 -4,-6 0.5612 31 10.202 MINOR ENSMUSG00000020674 Pxdn ENSMUST00000122328 ENSMUSP00000113703 TRANSLATION protein_coding - CCDS25856.1 1 1475.0 25.0 12.602 4.2 1030.6 0.0 2,-3 1.0 33 19.56 PRINCIPAL:1 ENSMUSG00000020674 Pxdn ENSMUST00000155190 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020674 Pxdn ENSMUST00000155318 - NO_TRANSLATION retained_intron ENSMUSG00000020674 Pxdn ENSMUST00000137316 - NO_TRANSLATION retained_intron ENSMUSG00000020674 Pxdn ENSMUST00000218620 - NO_TRANSLATION retained_intron ENSMUSG00000020674 Pxdn ENSMUST00000118321 ENSMUSP00000113477 TRANSLATION protein_coding - - 1 307.0 0.0 5.54 0.0 132.3 0.0 2,-3 0.0019 5 0.0 MINOR ENSMUSG00000020674 Pxdn ENSMUST00000126233 - NO_TRANSLATION retained_intron ENSMUSG00000089922 Gm43517 ENSMUST00000110746 ENSMUSP00000106374 TRANSLATION protein_coding,RT start - 2 339.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.6895 - -2.0 PRINCIPAL:1 ENSMUSG00000035472 Slc25a21 ENSMUST00000110680 ENSMUSP00000106308 TRANSLATION protein_coding - CCDS49069.1 5 305.0 0.0 6.75 0.0 184.9 0.0 -4,-5 0.0853 8 10.566 MINOR ENSMUSG00000035472 Slc25a21 ENSMUST00000044634 ENSMUSP00000039289 TRANSLATION protein_coding - CCDS25925.1 1 298.0 0.0 7.125 25.8 196.3 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000035472 Slc25a21 ENSMUST00000160892 - NO_TRANSLATION retained_intron ENSMUSG00000035472 Slc25a21 ENSMUST00000160709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035472 Slc25a21 ENSMUST00000217690 ENSMUSP00000151751 TRANSLATION protein_coding - CCDS49069.1 1 305.0 0.0 6.75 0.0 184.9 0.0 -4,-5 0.0853 8 10.566 MINOR ENSMUSG00000051166 Eml5 ENSMUST00000222593 - NO_TRANSLATION retained_intron ENSMUSG00000051166 Eml5 ENSMUST00000222097 ENSMUSP00000152624 TRANSLATION nonsense_mediated_decay start - 5 125.0 0.0 0.85 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000051166 Eml5 ENSMUST00000221511 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051166 Eml5 ENSMUST00000222717 - NO_TRANSLATION retained_intron ENSMUSG00000051166 Eml5 ENSMUST00000222128 ENSMUSP00000152401 TRANSLATION protein_coding start/stop - 2 184.0 0.0 1.594 0.0 39.7 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000051166 Eml5 ENSMUST00000220676 - NO_TRANSLATION retained_intron ENSMUSG00000051166 Eml5 ENSMUST00000065716 ENSMUSP00000065643 TRANSLATION protein_coding - - 5 1930.0 0.0 18.8852 0.0 402.9 0.0 -4,-1 0.2542 14 11.25 MINOR ENSMUSG00000051166 Eml5 ENSMUST00000221107 - NO_TRANSLATION retained_intron ENSMUSG00000051166 Eml5 ENSMUST00000223282 ENSMUSP00000152709 TRANSLATION protein_coding - CCDS36519.1 5 1977.0 0.0 19.25912 32.3 401.8 0.0 -4,-1 1.0 14 15.934 PRINCIPAL:1 ENSMUSG00000051166 Eml5 ENSMUST00000220848 - NO_TRANSLATION retained_intron ENSMUSG00000092019 Eif1ad6 ENSMUST00000164838 ENSMUSP00000132993 TRANSLATION protein_coding - CCDS49124.1 1 144.0 0.0 1.0 3.7 68.3 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000021240 Abcd4 ENSMUST00000220678 - NO_TRANSLATION retained_intron ENSMUSG00000021240 Abcd4 ENSMUST00000222942 - NO_TRANSLATION retained_intron ENSMUSG00000021240 Abcd4 ENSMUST00000222581 ENSMUSP00000152556 TRANSLATION nonsense_mediated_decay - - 1 194.0 0.0 4.6 0.0 152.9 4.0 -4,0 0.0039 1 -2.0 MINOR ENSMUSG00000021240 Abcd4 ENSMUST00000221070 ENSMUSP00000152881 TRANSLATION protein_coding stop - 5 130.0 0.0 3.5 0.0 44.5 4.0 -4,-1 0.0023 - -2.0 MINOR ENSMUSG00000021240 Abcd4 ENSMUST00000220553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021240 Abcd4 ENSMUST00000223107 ENSMUSP00000152694 TRANSLATION protein_coding - - 1 558.0 8.0 13.55 0.0 324.0 5.0 -4,-1 0.0172 7 13.416 MINOR ENSMUSG00000021240 Abcd4 ENSMUST00000021666 ENSMUSP00000021666 TRANSLATION protein_coding - CCDS26047.1 1 606.0 10.0 14.8 6.9 336.5 5.0 -4,0 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000021240 Abcd4 ENSMUST00000220952 - NO_TRANSLATION retained_intron ENSMUSG00000021240 Abcd4 ENSMUST00000222889 ENSMUSP00000152519 TRANSLATION nonsense_mediated_decay start - 5 150.0 0.0 2.95 0.0 89.5 4.0 -1,-5 0.0023 1 -2.0 MINOR ENSMUSG00000021240 Abcd4 ENSMUST00000221948 - NO_TRANSLATION retained_intron ENSMUSG00000109482 Dhrs7l ENSMUST00000208039 ENSMUSP00000146943 TRANSLATION protein_coding - - 5 335.0 38.0 6.366 0.0 161.9 0.0 1,-4 0.8077 3 18.0 PRINCIPAL:1 ENSMUSG00000109482 Dhrs7l ENSMUST00000209162 - NO_TRANSLATION retained_intron ENSMUSG00000109482 Dhrs7l ENSMUST00000222413 ENSMUSP00000152376 TRANSLATION protein_coding start - 5 242.0 36.0 4.2 0.0 134.9 0.0 0,-4 0.004 1 -2.0 MINOR ENSMUSG00000109482 Dhrs7l ENSMUST00000209092 ENSMUSP00000146711 TRANSLATION nonsense_mediated_decay - - 5 47.0 10.0 1.066 0.0 0.0 0.0 1,-4 0.0031 - -2.0 MINOR ENSMUSG00000109482 Dhrs7l ENSMUST00000209038 ENSMUSP00000147067 TRANSLATION protein_coding - - 5 209.0 32.0 3.466 0.0 95.3 0.0 1,-4 0.0034 1 4.2 MINOR ENSMUSG00000109482 Dhrs7l ENSMUST00000208307 ENSMUSP00000147204 TRANSLATION protein_coding - - 3 226.0 19.0 3.8 0.0 122.1 0.0 -4,-6 0.0 3 4.482 MINOR ENSMUSG00000109482 Dhrs7l ENSMUST00000207585 ENSMUSP00000146963 TRANSLATION protein_coding - - 5 171.0 25.0 3.366 0.0 95.3 0.0 1,-4 0.0023 1 2.004 MINOR ENSMUSG00000054150 Syne3 ENSMUST00000109927 ENSMUSP00000105553 TRANSLATION protein_coding - CCDS36543.1 5 888.0 0.0 0.6 0.4 133.8 1.0 -4,-2 0.4727 20 12.0 MINOR ENSMUSG00000054150 Syne3 ENSMUST00000095439 ENSMUSP00000093090 TRANSLATION protein_coding - CCDS36542.1 1 975.0 0.0 0.6 4.7 133.8 1.0 -4,-5 1.0 23 14.0 PRINCIPAL:1 ENSMUSG00000054150 Syne3 ENSMUST00000067005 ENSMUSP00000065771 TRANSLATION protein_coding - CCDS36543.1 1 888.0 0.0 0.6 0.4 133.8 1.0 -4,-2 0.4727 20 12.0 MINOR ENSMUSG00000037336 Mfsd2b ENSMUST00000143446 - NO_TRANSLATION retained_intron ENSMUSG00000037336 Mfsd2b ENSMUST00000153676 - NO_TRANSLATION retained_intron ENSMUSG00000037336 Mfsd2b ENSMUST00000137337 ENSMUSP00000117057 TRANSLATION protein_coding - - 2 391.0 0.0 0.7 0.0 214.8 15.0 1,-3 0.0108 1 4.632 MINOR ENSMUSG00000037336 Mfsd2b ENSMUST00000085790 ENSMUSP00000082945 TRANSLATION nonsense_mediated_decay - - 2 347.0 0.0 1.6 0.0 203.0 9.0 -4,-5 0.0414 1 -2.0 MINOR ENSMUSG00000037336 Mfsd2b ENSMUST00000147241 ENSMUSP00000114977 TRANSLATION nonsense_mediated_decay - - 3 117.0 0.0 0.9 0.0 52.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037336 Mfsd2b ENSMUST00000125344 - NO_TRANSLATION retained_intron ENSMUSG00000037336 Mfsd2b ENSMUST00000045921 ENSMUSP00000045315 TRANSLATION protein_coding - CCDS36401.2 1 494.0 0.0 1.6 2.1 281.3 15.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000037336 Mfsd2b ENSMUST00000150764 - NO_TRANSLATION retained_intron ENSMUSG00000113475 Gm49366 ENSMUST00000221229 ENSMUSP00000152794 TRANSLATION protein_coding,RT - - 3 421.0 0.0 3.0 11.4 436.0 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000042700 Sipa1l1 ENSMUST00000222714 ENSMUSP00000152212 TRANSLATION protein_coding - CCDS26026.1 1 1782.0 0.0 3.086 9.4 506.6 0.0 -4,-2 1.0 53 15.0 PRINCIPAL:1 ENSMUSG00000042700 Sipa1l1 ENSMUST00000222312 - NO_TRANSLATION retained_intron ENSMUSG00000042700 Sipa1l1 ENSMUST00000053969 ENSMUSP00000061014 TRANSLATION protein_coding - CCDS26026.1 5 1782.0 0.0 3.086 9.4 506.6 0.0 -4,-2 1.0 53 15.0 PRINCIPAL:1 ENSMUSG00000042700 Sipa1l1 ENSMUST00000220766 - NO_TRANSLATION retained_intron ENSMUSG00000042700 Sipa1l1 ENSMUST00000166429 ENSMUSP00000131030 TRANSLATION protein_coding - CCDS26026.1 1 1782.0 0.0 3.086 9.4 506.6 0.0 -4,-2 1.0 53 15.0 PRINCIPAL:1 ENSMUSG00000042700 Sipa1l1 ENSMUST00000221327 - NO_TRANSLATION retained_intron ENSMUSG00000042700 Sipa1l1 ENSMUST00000220550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042700 Sipa1l1 ENSMUST00000220963 ENSMUSP00000152681 TRANSLATION protein_coding - - 1 1713.0 0.0 3.086 0.0 484.8 0.0 -4,-2 0.1332 50 10.692 MINOR ENSMUSG00000042700 Sipa1l1 ENSMUST00000222298 ENSMUSP00000152356 TRANSLATION protein_coding - CCDS49105.1 1 1751.0 0.0 3.086 0.0 506.6 0.0 -4,-2 0.535 52 12.0 MINOR ENSMUSG00000042700 Sipa1l1 ENSMUST00000222849 - NO_TRANSLATION retained_intron ENSMUSG00000042700 Sipa1l1 ENSMUST00000221169 ENSMUSP00000152485 TRANSLATION nonsense_mediated_decay start - 3 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021175 Cdca7l ENSMUST00000021592 ENSMUSP00000021592 TRANSLATION protein_coding - CCDS49197.1 1 438.0 7.0 1.13 0.1 128.0 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000021175 Cdca7l ENSMUST00000176499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021175 Cdca7l ENSMUST00000177339 ENSMUSP00000135053 TRANSLATION protein_coding stop - 5 308.0 2.0 0.33 0.0 0.0 0.0 -4,-6 0.0016 2 -2.0 MINOR ENSMUSG00000021175 Cdca7l ENSMUST00000176735 ENSMUSP00000135142 TRANSLATION protein_coding stop - 5 226.0 0.0 1.13 0.0 0.0 0.0 -4,-5 0.0482 - -2.0 MINOR ENSMUSG00000063232 Serpina11 ENSMUST00000151709 ENSMUSP00000115400 TRANSLATION protein_coding stop - 5 236.0 0.0 0.93 0.0 157.4 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000063232 Serpina11 ENSMUST00000074693 ENSMUSP00000074258 TRANSLATION protein_coding - CCDS26143.2 1 427.0 0.0 4.22 5.4 340.1 0.0 4,-1 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000063232 Serpina11 ENSMUST00000139777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063232 Serpina11 ENSMUST00000120251 ENSMUSP00000112420 TRANSLATION protein_coding - CCDS56860.1 1 425.0 0.0 4.22 5.4 340.1 0.0 4,-1 0.9437 - 10.0 ALTERNATIVE:1 ENSMUSG00000063232 Serpina11 ENSMUST00000176246 ENSMUSP00000135138 TRANSLATION protein_coding stop - 5 258.0 0.0 1.55 0.0 181.2 0.0 4,-1 0.0004 - -2.0 MINOR ENSMUSG00000086022 Rad51ap2 ENSMUST00000124065 ENSMUSP00000128854 TRANSLATION protein_coding - CCDS49029.1 2 976.0 0.0 0.0 0.0 61.8 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061533 Cep128 ENSMUST00000154836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061533 Cep128 ENSMUST00000140674 ENSMUSP00000119394 TRANSLATION protein_coding start/stop - 5 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0095 - -2.0 MINOR ENSMUSG00000061533 Cep128 ENSMUST00000127802 - NO_TRANSLATION retained_intron ENSMUSG00000061533 Cep128 ENSMUST00000145094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061533 Cep128 ENSMUST00000126048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061533 Cep128 ENSMUST00000127866 - NO_TRANSLATION retained_intron ENSMUSG00000061533 Cep128 ENSMUST00000133329 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061533 Cep128 ENSMUST00000123161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061533 Cep128 ENSMUST00000143415 ENSMUSP00000122627 TRANSLATION nonsense_mediated_decay start - 2 573.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0435 7 -2.0 MINOR ENSMUSG00000061533 Cep128 ENSMUST00000123400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061533 Cep128 ENSMUST00000138935 - NO_TRANSLATION retained_intron ENSMUSG00000061533 Cep128 ENSMUST00000129111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061533 Cep128 ENSMUST00000141429 ENSMUSP00000115679 TRANSLATION protein_coding - CCDS36515.2 1 1102.0 0.0 0.0 4.1 0.0 0.0 -4,-6 1.0 14 2.0 PRINCIPAL:1 ENSMUSG00000062563 Cys1 ENSMUST00000074163 ENSMUSP00000073796 TRANSLATION nonsense_mediated_decay - CCDS36422.1 1 145.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.8458 - -2.0 MINOR ENSMUSG00000062563 Cys1 ENSMUST00000189849 ENSMUSP00000141121 TRANSLATION protein_coding - CCDS36422.1 1 145.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.8458 3 0.0 PRINCIPAL:1 ENSMUSG00000062563 Cys1 ENSMUST00000163514 ENSMUSP00000126787 TRANSLATION nonsense_mediated_decay - CCDS36422.1 1 145.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.8458 - -2.0 MINOR ENSMUSG00000062563 Cys1 ENSMUST00000186602 ENSMUSP00000140759 TRANSLATION protein_coding - CCDS36422.1 1 145.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.8458 3 0.0 PRINCIPAL:1 ENSMUSG00000062563 Cys1 ENSMUST00000173145 ENSMUSP00000133902 TRANSLATION nonsense_mediated_decay - CCDS36422.1 1 145.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.8458 - -2.0 MINOR ENSMUSG00000062563 Cys1 ENSMUST00000156453 ENSMUSP00000134522 TRANSLATION protein_coding - CCDS36422.1 2 145.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.8458 3 0.0 PRINCIPAL:1 ENSMUSG00000062563 Cys1 ENSMUST00000172771 ENSMUSP00000134701 TRANSLATION protein_coding start - 3 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0155 - -2.0 MINOR ENSMUSG00000062563 Cys1 ENSMUST00000148477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051367 Six1 ENSMUST00000175677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051367 Six1 ENSMUST00000176310 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051367 Six1 ENSMUST00000050029 ENSMUSP00000059026 TRANSLATION protein_coding - CCDS25973.1 1 284.0 2.0 1.0 34.9 217.3 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000051367 Six1 ENSMUST00000176091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043998 Mgat2 ENSMUST00000060579 ENSMUSP00000057905 TRANSLATION protein_coding - CCDS25947.1 - 442.0 1.0 1.0 11.0 511.5 0.0 -1,-6 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000044408 Sptssa ENSMUST00000218147 ENSMUSP00000151214 TRANSLATION nonsense_mediated_decay - - 5 74.0 0.0 1.0 0.0 45.2 1.0 -2,-5 0.0122 - -2.0 MINOR ENSMUSG00000044408 Sptssa ENSMUST00000220090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044408 Sptssa ENSMUST00000056228 ENSMUSP00000053671 TRANSLATION protein_coding - CCDS36445.1 1 71.0 0.0 2.0 24.2 73.5 2.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095656 Ighd2-8 ENSMUST00000180001 ENSMUSP00000141399 TRANSLATION IG_D_gene start/stop - - 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000091931 Gon7 ENSMUST00000173969 ENSMUSP00000136425 TRANSLATION protein_coding - CCDS49148.1 1 98.0 0.0 1.0 8.8 126.5 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000091931 Gon7 ENSMUST00000179263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041323 Ak7 ENSMUST00000040876 ENSMUSP00000043145 TRANSLATION protein_coding - CCDS49162.1 1 723.0 9.0 1.85 8.3 103.5 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000041323 Ak7 ENSMUST00000221981 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041323 Ak7 ENSMUST00000220702 - NO_TRANSLATION retained_intron ENSMUSG00000020640 Itsn2 ENSMUST00000218084 - NO_TRANSLATION retained_intron ENSMUSG00000020640 Itsn2 ENSMUST00000220311 ENSMUSP00000151896 TRANSLATION protein_coding - - 1 1685.0 10.0 23.03 0.0 706.7 0.0 -4,-6 0.4707 35 14.0 ALTERNATIVE:2 ENSMUSG00000020640 Itsn2 ENSMUST00000217981 - NO_TRANSLATION retained_intron ENSMUSG00000020640 Itsn2 ENSMUST00000218402 ENSMUSP00000151663 TRANSLATION protein_coding stop - 2 175.0 5.0 3.08 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000020640 Itsn2 ENSMUST00000219182 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020640 Itsn2 ENSMUST00000217672 ENSMUSP00000151561 TRANSLATION protein_coding start - 1 712.0 0.0 6.9 0.0 240.5 0.0 -4,-6 0.0024 17 -2.0 MINOR ENSMUSG00000020640 Itsn2 ENSMUST00000218072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020640 Itsn2 ENSMUST00000219308 - NO_TRANSLATION retained_intron ENSMUSG00000020640 Itsn2 ENSMUST00000062580 ENSMUSP00000052758 TRANSLATION protein_coding - CCDS36398.1 5 1658.0 10.0 23.03 1.1 706.7 0.0 -4,-6 1.0 35 15.0 PRINCIPAL:2 ENSMUSG00000020640 Itsn2 ENSMUST00000219832 - NO_TRANSLATION retained_intron ENSMUSG00000020640 Itsn2 ENSMUST00000218923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020640 Itsn2 ENSMUST00000218211 - NO_TRANSLATION retained_intron ENSMUSG00000020640 Itsn2 ENSMUST00000219007 ENSMUSP00000151900 TRANSLATION protein_coding - CCDS36398.1 1 1658.0 10.0 23.03 1.1 706.7 0.0 -4,-6 1.0 35 15.0 PRINCIPAL:2 ENSMUSG00000020640 Itsn2 ENSMUST00000217942 - NO_TRANSLATION retained_intron ENSMUSG00000020640 Itsn2 ENSMUST00000218985 - NO_TRANSLATION retained_intron ENSMUSG00000021009 Ptpn21 ENSMUST00000221932 ENSMUSP00000152639 TRANSLATION protein_coding stop - 1 850.0 0.0 4.725 0.0 200.3 0.0 -4,0 0.007 10 -2.0 MINOR ENSMUSG00000021009 Ptpn21 ENSMUST00000223321 - NO_TRANSLATION retained_intron ENSMUSG00000021009 Ptpn21 ENSMUST00000085116 ENSMUSP00000082197 TRANSLATION protein_coding - CCDS26098.1 1 1176.0 11.0 10.555 3.2 443.2 0.0 -4,0 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000021009 Ptpn21 ENSMUST00000170188 ENSMUSP00000126975 TRANSLATION protein_coding - CCDS26098.1 1 1176.0 11.0 10.555 3.2 443.2 0.0 -4,0 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000021009 Ptpn21 ENSMUST00000221535 ENSMUSP00000152067 TRANSLATION nonsense_mediated_decay - - 5 450.0 0.0 4.725 0.0 202.2 0.0 -4,0 0.0009 2 -2.0 MINOR ENSMUSG00000021009 Ptpn21 ENSMUST00000221148 ENSMUSP00000152695 TRANSLATION nonsense_mediated_decay - - 1 374.0 0.0 4.725 0.0 202.2 0.0 -4,0 0.0009 2 -2.0 MINOR ENSMUSG00000021009 Ptpn21 ENSMUST00000222071 - NO_TRANSLATION retained_intron ENSMUSG00000021285 Ppp1r13b ENSMUST00000163747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021285 Ppp1r13b ENSMUST00000220927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021285 Ppp1r13b ENSMUST00000220486 ENSMUSP00000152424 TRANSLATION protein_coding start - 5 964.0 0.0 4.4 0.0 108.0 0.0 -4,-6 0.0471 15 -2.0 MINOR ENSMUSG00000021285 Ppp1r13b ENSMUST00000054815 ENSMUSP00000062464 TRANSLATION protein_coding - CCDS56866.1 1 1087.0 0.0 6.0 6.9 108.0 0.0 -4,-7 1.0 19 14.0 PRINCIPAL:1 ENSMUSG00000034266 Batf ENSMUST00000222781 - NO_TRANSLATION retained_intron ENSMUSG00000034266 Batf ENSMUST00000040536 ENSMUSP00000040706 TRANSLATION protein_coding - CCDS26061.1 1 125.0 0.0 2.0 10.1 47.9 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021099 Six6 ENSMUST00000021519 ENSMUSP00000021519 TRANSLATION protein_coding - CCDS25972.1 1 246.0 0.0 1.2 30.9 204.9 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020635 Fkbp1b ENSMUST00000020964 ENSMUSP00000020964 TRANSLATION protein_coding - CCDS25792.1 1 108.0 0.0 3.0 0.0 115.1 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000020635 Fkbp1b ENSMUST00000219880 ENSMUSP00000151687 TRANSLATION protein_coding - - 1 80.0 0.0 2.3 7.5 59.2 0.0 -4,-5 0.7553 - 9.248 MINOR ENSMUSG00000062961 Ccdc177 ENSMUST00000073251 ENSMUSP00000072982 TRANSLATION protein_coding - CCDS26015.1 1 706.0 0.0 0.0 2.1 374.4 0.0 -4,-5 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000093896 Ighv1-76 ENSMUST00000197537 ENSMUSP00000143144 TRANSLATION IG_V_gene stop - - 117.0 9.0 1.0 1.0 59.7 0.0 3,-2 0.8529 2 -2.0 PRINCIPAL:5 ENSMUSG00000093896 Ighv1-76 ENSMUST00000169155 ENSMUSP00000133037 TRANSLATION IG_V_gene start/stop - - 98.0 9.0 1.0 0.0 59.7 0.0 -4,-6 0.0628 2 -2.0 ALTERNATIVE:2 ENSMUSG00000076432 Ywhaq ENSMUST00000103002 ENSMUSP00000100067 TRANSLATION protein_coding - CCDS25837.1 1 245.0 0.0 4.4 36.9 363.7 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000076432 Ywhaq ENSMUST00000155480 ENSMUSP00000117118 TRANSLATION protein_coding - - 1 243.0 0.0 4.08 0.0 354.6 0.0 -4,-5 0.0662 10 10.812 MINOR ENSMUSG00000076432 Ywhaq ENSMUST00000140710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076432 Ywhaq ENSMUST00000146206 - NO_TRANSLATION retained_intron ENSMUSG00000076432 Ywhaq ENSMUST00000135088 ENSMUSP00000123605 TRANSLATION protein_coding - CCDS25837.1 1 245.0 0.0 4.4 36.9 363.7 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000037904 Ankrd9 ENSMUST00000142012 ENSMUSP00000121536 TRANSLATION protein_coding - - 5 359.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0868 2 0.0 ALTERNATIVE:2 ENSMUSG00000037904 Ankrd9 ENSMUST00000135131 ENSMUSP00000119339 TRANSLATION protein_coding - CCDS26174.1 1 326.0 0.0 0.0 0.8 0.0 0.0 -4,-7 0.9206 2 0.0 PRINCIPAL:2 ENSMUSG00000037904 Ankrd9 ENSMUST00000128353 ENSMUSP00000120816 TRANSLATION protein_coding - CCDS26174.1 1 326.0 0.0 0.0 0.8 0.0 0.0 -4,-7 0.9206 2 0.0 PRINCIPAL:2 ENSMUSG00000037904 Ankrd9 ENSMUST00000043459 ENSMUSP00000048823 TRANSLATION protein_coding - CCDS26174.1 1 326.0 0.0 0.0 0.8 0.0 0.0 -4,-7 0.9206 2 0.0 PRINCIPAL:2 ENSMUSG00000037904 Ankrd9 ENSMUST00000144882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037904 Ankrd9 ENSMUST00000140788 ENSMUSP00000121279 TRANSLATION protein_coding - CCDS26174.1 3 326.0 0.0 0.0 0.8 0.0 0.0 -4,-7 0.9206 2 0.0 PRINCIPAL:2 ENSMUSG00000037904 Ankrd9 ENSMUST00000148765 ENSMUSP00000123239 TRANSLATION protein_coding - CCDS26174.1 2 326.0 0.0 0.0 0.8 0.0 0.0 -4,-7 0.9206 2 0.0 PRINCIPAL:2 ENSMUSG00000020964 Sel1l ENSMUST00000169843 - NO_TRANSLATION retained_intron ENSMUSG00000020964 Sel1l ENSMUST00000165282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020964 Sel1l ENSMUST00000167466 ENSMUSP00000129384 TRANSLATION protein_coding - CCDS49137.1 1 740.0 0.0 9.628 0.0 179.1 0.0 3,-2 0.1698 17 6.216 MINOR ENSMUSG00000020964 Sel1l ENSMUST00000167594 - NO_TRANSLATION retained_intron ENSMUSG00000020964 Sel1l ENSMUST00000021347 ENSMUSP00000021347 TRANSLATION protein_coding - CCDS26091.1 1 790.0 5.0 10.628 1.0 242.2 0.0 3,-2 1.0 18 17.0 PRINCIPAL:1 ENSMUSG00000020964 Sel1l ENSMUST00000171959 - NO_TRANSLATION retained_intron ENSMUSG00000020964 Sel1l ENSMUST00000172246 - NO_TRANSLATION retained_intron ENSMUSG00000020964 Sel1l ENSMUST00000171465 - NO_TRANSLATION retained_intron ENSMUSG00000020964 Sel1l ENSMUST00000166691 - NO_TRANSLATION retained_intron ENSMUSG00000044548 Dact1 ENSMUST00000150639 ENSMUSP00000117169 TRANSLATION protein_coding - CCDS49083.1 3 815.0 0.0 0.0 0.4 789.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044548 Dact1 ENSMUST00000061273 ENSMUSP00000058943 TRANSLATION protein_coding - CCDS25963.1 1 778.0 0.0 0.0 0.4 512.9 0.0 -4,-5 0.1358 - 0.0 MINOR ENSMUSG00000008822 Acyp1 ENSMUST00000117138 ENSMUSP00000113161 TRANSLATION protein_coding - CCDS26055.1 2 99.0 7.0 1.75 33.2 79.3 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000008822 Acyp1 ENSMUST00000008966 ENSMUSP00000008966 TRANSLATION protein_coding - CCDS26055.1 1 99.0 7.0 1.75 33.2 79.3 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000008822 Acyp1 ENSMUST00000121930 ENSMUSP00000112609 TRANSLATION protein_coding - - 2 157.0 7.0 1.75 3.4 79.3 0.0 -4,-7 0.1675 5 18.3 MINOR ENSMUSG00000008822 Acyp1 ENSMUST00000065913 ENSMUSP00000070555 TRANSLATION protein_coding - - 1 108.0 7.0 0.75 0.0 0.0 0.0 -4,-5 0.0008 - 8.574 MINOR ENSMUSG00000076632 Gm16968 ENSMUST00000103441 ENSMUSP00000141206 TRANSLATION IG_D_gene start/stop - - 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000020649 Rrm2 ENSMUST00000020980 ENSMUSP00000020980 TRANSLATION protein_coding - CCDS25844.1 1 390.0 6.0 8.98 19.0 426.5 0.0 -4,-6 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000020649 Rrm2 ENSMUST00000153058 ENSMUSP00000120893 TRANSLATION protein_coding stop - 2 225.0 4.0 5.5 0.0 284.7 0.0 0,-3 0.0019 4 -2.0 MINOR ENSMUSG00000020649 Rrm2 ENSMUST00000147789 - NO_TRANSLATION retained_intron ENSMUSG00000020649 Rrm2 ENSMUST00000154588 ENSMUSP00000119502 TRANSLATION protein_coding start - 5 243.0 5.0 5.83 0.0 287.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000071178 Serpina1b ENSMUST00000164454 ENSMUSP00000127266 TRANSLATION protein_coding - CCDS26138.1 1 413.0 0.0 4.0 6.2 395.3 0.0 4,-1 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000071178 Serpina1b ENSMUST00000186166 ENSMUSP00000139941 TRANSLATION protein_coding - CCDS26138.1 5 413.0 0.0 4.0 6.2 395.3 0.0 4,-1 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000071178 Serpina1b ENSMUST00000187220 ENSMUSP00000141006 TRANSLATION protein_coding stop - 3 36.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000071178 Serpina1b ENSMUST00000095450 ENSMUSP00000093101 TRANSLATION protein_coding - CCDS26138.1 1 413.0 0.0 4.0 6.2 395.3 0.0 4,-1 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000045679 Slc66a3 ENSMUST00000137960 ENSMUSP00000152643 TRANSLATION protein_coding stop - 3 34.0 0.0 0.33 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000045679 Slc66a3 ENSMUST00000067572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045679 Slc66a3 ENSMUST00000141232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045679 Slc66a3 ENSMUST00000222203 ENSMUSP00000152715 TRANSLATION protein_coding - - 5 120.0 0.0 2.99 3.1 32.9 0.0 1,-2 0.1899 1 7.904 MINOR ENSMUSG00000045679 Slc66a3 ENSMUST00000134938 ENSMUSP00000152138 TRANSLATION protein_coding stop - 3 12.0 0.0 0.33 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000045679 Slc66a3 ENSMUST00000054536 ENSMUSP00000054462 TRANSLATION protein_coding - CCDS25824.1 1 202.0 0.0 5.24 21.8 32.9 0.0 1,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000045679 Slc66a3 ENSMUST00000140933 - NO_TRANSLATION retained_intron ENSMUSG00000045679 Slc66a3 ENSMUST00000156360 ENSMUSP00000115895 TRANSLATION nonsense_mediated_decay - - 1 104.0 0.0 2.33 1.0 32.9 0.0 1,-2 0.1098 1 -2.0 MINOR ENSMUSG00000076671 Ighv13-2 ENSMUST00000183954 ENSMUSP00000139850 TRANSLATION IG_V_gene start/stop - - 100.0 3.0 1.0 0.0 58.0 0.0 -4,-7 0.0412 4 -2.0 ALTERNATIVE:2 ENSMUSG00000076671 Ighv13-2 ENSMUST00000125484 ENSMUSP00000141621 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.06 0.0 58.0 0.0 4,-1 0.8289 4 -2.0 PRINCIPAL:5 ENSMUSG00000021091 Serpina3n ENSMUST00000021506 ENSMUSP00000021506 TRANSLATION protein_coding - CCDS26152.1 1 418.0 0.0 4.0 2.8 395.1 0.0 4,-1 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000045930 Clec14a ENSMUST00000062254 ENSMUSP00000054451 TRANSLATION protein_coding - CCDS25930.1 - 459.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.9709 1 0.0 PRINCIPAL:1 ENSMUSG00000035133 Arhgap5 ENSMUST00000218755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035133 Arhgap5 ENSMUST00000217820 ENSMUSP00000151267 TRANSLATION protein_coding - - 5 241.0 0.0 4.5 0.0 172.6 0.0 -4,-5 0.0002 2 4.5 MINOR ENSMUSG00000035133 Arhgap5 ENSMUST00000110725 ENSMUSP00000106353 TRANSLATION protein_coding - CCDS36443.1 1 1503.0 17.0 5.25 18.5 331.0 0.0 -4,-5 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000035133 Arhgap5 ENSMUST00000219443 ENSMUSP00000151809 TRANSLATION protein_coding - CCDS36443.1 5 1503.0 17.0 5.25 18.5 331.0 0.0 -4,-5 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000021013 Ttc8 ENSMUST00000223356 - NO_TRANSLATION retained_intron ENSMUSG00000021013 Ttc8 ENSMUST00000132878 ENSMUSP00000115828 TRANSLATION protein_coding stop - 5 207.0 0.0 2.955 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021013 Ttc8 ENSMUST00000085109 ENSMUSP00000082190 TRANSLATION protein_coding - CCDS26101.1 1 505.0 0.0 9.955 25.5 37.8 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000021013 Ttc8 ENSMUST00000223277 - NO_TRANSLATION retained_intron ENSMUSG00000021013 Ttc8 ENSMUST00000223023 - NO_TRANSLATION retained_intron ENSMUSG00000021013 Ttc8 ENSMUST00000124514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021013 Ttc8 ENSMUST00000168255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021013 Ttc8 ENSMUST00000079146 ENSMUSP00000078148 TRANSLATION protein_coding - CCDS26102.1 1 515.0 0.0 9.625 15.0 37.8 0.0 -4,-7 0.8972 7 13.624 MINOR ENSMUSG00000021013 Ttc8 ENSMUST00000139298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072946 Ptgr2 ENSMUST00000146377 ENSMUSP00000119981 TRANSLATION protein_coding - CCDS36490.1 1 351.0 25.0 7.5 20.9 151.1 0.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000072946 Ptgr2 ENSMUST00000128541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072946 Ptgr2 ENSMUST00000128158 - NO_TRANSLATION retained_intron ENSMUSG00000072946 Ptgr2 ENSMUST00000135001 ENSMUSP00000114559 TRANSLATION protein_coding - - 5 315.0 21.0 6.25 0.0 151.1 0.0 -4,-7 0.0179 10 12.834 MINOR ENSMUSG00000072946 Ptgr2 ENSMUST00000123614 ENSMUSP00000115704 TRANSLATION protein_coding - CCDS36490.1 1 351.0 25.0 7.5 20.9 151.1 0.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000072946 Ptgr2 ENSMUST00000147363 ENSMUSP00000114766 TRANSLATION protein_coding - - 1 316.0 21.0 6.25 0.0 151.1 0.0 -4,-7 0.0179 10 12.834 MINOR ENSMUSG00000072946 Ptgr2 ENSMUST00000150720 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072946 Ptgr2 ENSMUST00000138733 - NO_TRANSLATION retained_intron ENSMUSG00000072946 Ptgr2 ENSMUST00000123693 ENSMUSP00000115506 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 1.5 0.0 42.5 0.0 -4,-7 0.0243 2 -2.0 MINOR ENSMUSG00000001175 Calm1 ENSMUST00000001204 ENSMUSP00000001204 TRANSLATION protein_coding - - 1 113.0 30.0 3.08 14.1 108.8 0.0 -4,-5 0.1859 - 10.904 MINOR ENSMUSG00000001175 Calm1 ENSMUST00000153524 - NO_TRANSLATION retained_intron ENSMUSG00000001175 Calm1 ENSMUST00000127300 - NO_TRANSLATION retained_intron ENSMUSG00000001175 Calm1 ENSMUST00000110082 ENSMUSP00000105709 TRANSLATION protein_coding - CCDS36523.1 1 149.0 38.0 4.16 36.9 126.5 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000096049 Eif1ad17 ENSMUST00000180285 ENSMUSP00000136486 TRANSLATION protein_coding - - - 144.0 0.0 1.0 3.7 69.4 0.0 -4,-5 0.8152 - 13.0 PRINCIPAL:1 ENSMUSG00000020630 Rnaseh1 ENSMUST00000020959 ENSMUSP00000020959 TRANSLATION protein_coding - CCDS25852.1 1 285.0 7.0 5.6 7.4 154.4 0.0 -4,0 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000020630 Rnaseh1 ENSMUST00000221496 - NO_TRANSLATION retained_intron ENSMUSG00000020630 Rnaseh1 ENSMUST00000223322 ENSMUSP00000152845 TRANSLATION nonsense_mediated_decay - - 1 198.0 2.0 2.63 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000020630 Rnaseh1 ENSMUST00000222767 - NO_TRANSLATION retained_intron ENSMUSG00000033854 Kcnk10 ENSMUST00000221906 - NO_TRANSLATION retained_intron ENSMUSG00000033854 Kcnk10 ENSMUST00000221305 ENSMUSP00000152656 TRANSLATION protein_coding - - 1 241.0 0.0 3.2 0.0 67.5 4.0 -4,-5 0.0038 1 3.318 MINOR ENSMUSG00000033854 Kcnk10 ENSMUST00000221240 ENSMUSP00000152473 TRANSLATION protein_coding - CCDS36518.1 1 535.0 0.0 5.5 4.7 135.5 6.0 0,-3 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000033854 Kcnk10 ENSMUST00000110113 ENSMUSP00000105740 TRANSLATION protein_coding - - 1 521.0 0.0 5.5 2.6 135.5 6.0 -4,-7 0.6049 4 12.864 MINOR ENSMUSG00000021259 Cyp46a1 ENSMUST00000222902 - NO_TRANSLATION retained_intron ENSMUSG00000021259 Cyp46a1 ENSMUST00000221708 ENSMUSP00000152489 TRANSLATION nonsense_mediated_decay start - 5 112.0 0.0 2.9 0.0 26.7 0.0 1,2 0.0014 3 -2.0 MINOR ENSMUSG00000021259 Cyp46a1 ENSMUST00000021684 ENSMUSP00000021684 TRANSLATION protein_coding - CCDS26160.1 1 500.0 31.0 12.914 7.2 286.6 0.0 1,-2 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000021259 Cyp46a1 ENSMUST00000222240 - NO_TRANSLATION retained_intron ENSMUSG00000002804 Nudt14 ENSMUST00000221497 ENSMUSP00000152398 TRANSLATION protein_coding - - 2 66.0 3.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - 1.668 MINOR ENSMUSG00000002804 Nudt14 ENSMUST00000222793 - NO_TRANSLATION retained_intron ENSMUSG00000002804 Nudt14 ENSMUST00000222932 - NO_TRANSLATION retained_intron ENSMUSG00000002804 Nudt14 ENSMUST00000221397 ENSMUSP00000152599 TRANSLATION protein_coding - CCDS26201.1 1 222.0 11.0 4.5 11.1 26.7 0.0 -4,-6 1.0 3 20.64 PRINCIPAL:1 ENSMUSG00000002804 Nudt14 ENSMUST00000002881 ENSMUSP00000002881 TRANSLATION protein_coding - - 2 210.0 11.0 4.0 1.1 28.4 0.0 -4,-6 0.1032 2 17.028 MINOR ENSMUSG00000021022 Ppp2r3c ENSMUST00000219809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021022 Ppp2r3c ENSMUST00000218116 - NO_TRANSLATION retained_intron ENSMUSG00000021022 Ppp2r3c ENSMUST00000021410 ENSMUSP00000021410 TRANSLATION protein_coding - CCDS36450.1 1 453.0 4.0 9.75 18.2 0.0 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000012609 Ttll5 ENSMUST00000153570 ENSMUSP00000135139 TRANSLATION nonsense_mediated_decay - - 3 91.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000177114 ENSMUSP00000135395 TRANSLATION nonsense_mediated_decay - - 5 432.0 21.0 6.458 0.0 311.8 0.0 -4,-5 0.0273 - -2.0 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000175899 - NO_TRANSLATION retained_intron ENSMUSG00000012609 Ttll5 ENSMUST00000095536 ENSMUSP00000093192 TRANSLATION protein_coding - - 2 438.0 21.0 6.458 0.0 311.8 0.0 -4,-5 0.0273 - 16.422 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000142411 ENSMUSP00000122530 TRANSLATION protein_coding stop - 5 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000155448 ENSMUSP00000134971 TRANSLATION nonsense_mediated_decay - - 2 563.0 21.0 7.248 0.1 311.8 0.0 -4,-5 0.1592 - -2.0 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000176937 ENSMUSP00000135730 TRANSLATION protein_coding start/stop - 5 408.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.002 1 -2.0 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000177525 ENSMUSP00000135712 TRANSLATION protein_coding start - 1 395.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.002 1 -2.0 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000177188 ENSMUSP00000134928 TRANSLATION protein_coding stop - 5 176.0 2.0 1.738 0.0 45.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000220906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012609 Ttll5 ENSMUST00000176695 ENSMUSP00000135852 TRANSLATION nonsense_mediated_decay - - 5 432.0 21.0 6.458 0.0 311.8 0.0 -4,-5 0.0273 - -2.0 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000040273 ENSMUSP00000039939 TRANSLATION protein_coding - CCDS83991.1 5 1295.0 21.0 7.248 1.3 311.8 0.0 -4,-5 0.5341 1 18.154 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000124701 - NO_TRANSLATION retained_intron ENSMUSG00000012609 Ttll5 ENSMUST00000176008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012609 Ttll5 ENSMUST00000110224 ENSMUSP00000105853 TRANSLATION protein_coding - - 5 1281.0 21.0 7.248 2.6 311.8 0.0 -4,-5 0.5799 1 18.82 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000040179 ENSMUSP00000048809 TRANSLATION protein_coding - CCDS36499.2 1 1328.0 21.0 7.248 4.9 311.8 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000012609 Ttll5 ENSMUST00000110220 ENSMUSP00000105849 TRANSLATION protein_coding - - 1 348.0 16.0 5.258 0.0 235.1 0.0 -4,-5 0.0004 - 6.084 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000175844 ENSMUSP00000134934 TRANSLATION nonsense_mediated_decay start - 1 297.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0012 1 -2.0 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000176460 ENSMUSP00000135279 TRANSLATION protein_coding start/stop - 5 301.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0022 - -2.0 MINOR ENSMUSG00000012609 Ttll5 ENSMUST00000177168 ENSMUSP00000134874 TRANSLATION protein_coding start - 1 795.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0089 1 -2.0 MINOR ENSMUSG00000021007 Spata7 ENSMUST00000221273 - NO_TRANSLATION retained_intron ENSMUSG00000021007 Spata7 ENSMUST00000130136 - NO_TRANSLATION retained_intron ENSMUSG00000021007 Spata7 ENSMUST00000101144 ENSMUSP00000098704 TRANSLATION protein_coding - CCDS79145.1 1 415.0 0.0 0.0 0.0 220.5 0.0 -4,0 0.0462 2 0.0 MINOR ENSMUSG00000021007 Spata7 ENSMUST00000048402 ENSMUSP00000045827 TRANSLATION protein_coding - CCDS26097.1 1 582.0 0.0 0.0 0.1 623.0 0.0 -4,0 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000021007 Spata7 ENSMUST00000222378 - NO_TRANSLATION retained_intron ENSMUSG00000021007 Spata7 ENSMUST00000222195 - NO_TRANSLATION retained_intron ENSMUSG00000021007 Spata7 ENSMUST00000101146 ENSMUSP00000098705 TRANSLATION protein_coding - CCDS70413.1 1 550.0 0.0 0.0 0.1 497.6 0.0 -4,0 0.0842 4 0.0 MINOR ENSMUSG00000021007 Spata7 ENSMUST00000152482 - NO_TRANSLATION retained_intron ENSMUSG00000021007 Spata7 ENSMUST00000155899 - NO_TRANSLATION retained_intron ENSMUSG00000051721 Wdcp ENSMUST00000223551 ENSMUSP00000152571 TRANSLATION protein_coding - - 5 710.0 0.0 0.0 0.3 973.3 0.0 -4,-7 0.8398 11 6.0 PRINCIPAL:1 ENSMUSG00000051721 Wdcp ENSMUST00000220170 ENSMUSP00000151965 TRANSLATION protein_coding stop - 1 540.0 0.0 0.0 0.0 781.3 0.0 -4,-7 0.0669 9 -2.0 MINOR ENSMUSG00000051721 Wdcp ENSMUST00000053034 ENSMUSP00000054102 TRANSLATION protein_coding - CCDS25793.1 1 635.0 0.0 0.0 0.0 855.9 0.0 -4,-7 0.1365 9 0.0 MINOR ENSMUSG00000051721 Wdcp ENSMUST00000085793 ENSMUSP00000082948 TRANSLATION protein_coding - CCDS49019.1 2 663.0 0.0 0.0 0.0 920.7 0.0 -4,-7 0.1617 10 2.844 MINOR ENSMUSG00000051721 Wdcp ENSMUST00000219069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051721 Wdcp ENSMUST00000220215 ENSMUSP00000151585 TRANSLATION protein_coding - CCDS49019.1 1 663.0 0.0 0.0 0.0 920.7 0.0 -4,-7 0.1617 10 2.844 MINOR ENSMUSG00000095889 Ighv1-58 ENSMUST00000103529 ENSMUSP00000100310 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.1 1.0 57.7 0.0 3,-2 0.828 1 -2.0 PRINCIPAL:1 ENSMUSG00000079013 Serpina3j ENSMUST00000109957 ENSMUSP00000105583 TRANSLATION protein_coding - CCDS49158.1 5 420.0 0.0 3.8 0.1 360.6 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000020672 Sntg2 ENSMUST00000133324 ENSMUSP00000114245 TRANSLATION nonsense_mediated_decay - - 1 93.0 0.0 0.066 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020672 Sntg2 ENSMUST00000125530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020672 Sntg2 ENSMUST00000142046 ENSMUSP00000115942 TRANSLATION nonsense_mediated_decay - - 1 99.0 0.0 0.066 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020672 Sntg2 ENSMUST00000156953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020672 Sntg2 ENSMUST00000218489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020672 Sntg2 ENSMUST00000218723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020672 Sntg2 ENSMUST00000130062 - NO_TRANSLATION retained_intron ENSMUSG00000020672 Sntg2 ENSMUST00000149710 ENSMUSP00000123332 TRANSLATION nonsense_mediated_decay - - 1 223.0 0.0 3.59975 0.0 55.6 0.0 -4,-1 0.0266 1 -2.0 MINOR ENSMUSG00000020672 Sntg2 ENSMUST00000021004 ENSMUSP00000021004 TRANSLATION protein_coding - CCDS25858.1 1 539.0 0.0 3.626 12.1 55.6 0.0 -4,-1 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000062352 Itgb1bp1 ENSMUST00000173729 ENSMUSP00000134627 TRANSLATION protein_coding - CCDS25833.1 1 200.0 0.0 3.83 34.7 414.5 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000062352 Itgb1bp1 ENSMUST00000172962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062352 Itgb1bp1 ENSMUST00000173688 ENSMUSP00000133557 TRANSLATION protein_coding start - 3 84.0 0.0 1.75 0.0 144.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062352 Itgb1bp1 ENSMUST00000232072 ENSMUSP00000156312 TRANSLATION protein_coding - CCDS25833.1 - 200.0 0.0 3.83 34.7 414.5 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000062352 Itgb1bp1 ENSMUST00000173614 - NO_TRANSLATION retained_intron ENSMUSG00000062352 Itgb1bp1 ENSMUST00000172834 ENSMUSP00000134508 TRANSLATION protein_coding - - 1 188.0 0.0 3.08 0.0 371.2 0.0 -4,-2 0.0034 3 7.902 MINOR ENSMUSG00000062352 Itgb1bp1 ENSMUST00000076260 ENSMUSP00000075609 TRANSLATION protein_coding - CCDS25833.1 1 200.0 0.0 3.83 34.7 414.5 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020634 Ubxn2a ENSMUST00000141360 ENSMUSP00000116832 TRANSLATION nonsense_mediated_decay - - 3 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020634 Ubxn2a ENSMUST00000142867 ENSMUSP00000118834 TRANSLATION protein_coding - CCDS25795.1 1 258.0 0.0 3.064 9.6 124.6 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000020634 Ubxn2a ENSMUST00000020962 ENSMUSP00000020962 TRANSLATION protein_coding - CCDS25795.1 1 258.0 0.0 3.064 9.6 124.6 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000037787 Coa8 ENSMUST00000040519 ENSMUSP00000038865 TRANSLATION protein_coding - CCDS26186.1 1 192.0 0.0 3.75 4.2 175.2 0.0 -4,0 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000037787 Coa8 ENSMUST00000162316 ENSMUSP00000125711 TRANSLATION protein_coding - - 1 130.0 0.0 1.75 1.0 104.6 0.0 -4,0 0.0299 1 3.762 MINOR ENSMUSG00000037787 Coa8 ENSMUST00000163220 ENSMUSP00000131169 TRANSLATION protein_coding - CCDS49181.1 2 194.0 0.0 2.75 0.0 146.6 0.0 -4,0 0.0597 1 8.286 MINOR ENSMUSG00000037787 Coa8 ENSMUST00000159557 ENSMUSP00000124919 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000096753 Fam181a ENSMUST00000179363 ENSMUSP00000136681 TRANSLATION protein_coding - CCDS56858.1 2 292.0 0.0 0.2 9.9 374.9 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096753 Fam181a ENSMUST00000189885 ENSMUSP00000139607 TRANSLATION protein_coding stop - 2 160.0 0.0 0.2 0.0 241.8 0.0 -4,-6 0.0162 - -2.0 MINOR ENSMUSG00000096753 Fam181a ENSMUST00000191218 ENSMUSP00000140842 TRANSLATION protein_coding - CCDS56858.1 5 292.0 0.0 0.2 9.9 374.9 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000020585 Laptm4a ENSMUST00000020909 ENSMUSP00000020909 TRANSLATION protein_coding - - 1 233.0 0.0 3.0 4.7 0.0 0.0 -4,-1 0.7873 1 8.0 PRINCIPAL:1 ENSMUSG00000021180 Rps6ka5 ENSMUST00000043599 ENSMUSP00000042987 TRANSLATION protein_coding - CCDS26107.1 1 863.0 38.0 14.135 0.0 490.7 0.0 -4,-5 0.2077 21 16.89 MINOR ENSMUSG00000021180 Rps6ka5 ENSMUST00000222347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021180 Rps6ka5 ENSMUST00000221356 ENSMUSP00000152293 TRANSLATION protein_coding start/stop - 3 207.0 18.0 4.08 0.0 150.1 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000021180 Rps6ka5 ENSMUST00000221323 - NO_TRANSLATION retained_intron ENSMUSG00000021180 Rps6ka5 ENSMUST00000221307 - NO_TRANSLATION retained_intron ENSMUSG00000021180 Rps6ka5 ENSMUST00000222731 ENSMUSP00000152481 TRANSLATION protein_coding - - 1 798.0 38.0 14.135 2.8 509.2 0.0 -4,-5 1.0 21 19.0 PRINCIPAL:1 ENSMUSG00000021180 Rps6ka5 ENSMUST00000222403 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021180 Rps6ka5 ENSMUST00000221379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021180 Rps6ka5 ENSMUST00000221246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048285 Frmd6 ENSMUST00000057859 ENSMUSP00000052202 TRANSLATION protein_coding - CCDS25959.1 1 622.0 0.0 4.41 13.2 151.2 0.0 -4,-1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000048285 Frmd6 ENSMUST00000222045 - NO_TRANSLATION retained_intron ENSMUSG00000048285 Frmd6 ENSMUST00000220515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048285 Frmd6 ENSMUST00000222802 - NO_TRANSLATION retained_intron ENSMUSG00000061947 Serpina10 ENSMUST00000121625 ENSMUSP00000113644 TRANSLATION protein_coding - CCDS79150.1 1 394.0 0.0 4.0 0.0 140.6 0.0 3,-2 0.0408 6 4.002 MINOR ENSMUSG00000061947 Serpina10 ENSMUST00000044231 ENSMUSP00000048357 TRANSLATION protein_coding - CCDS26134.1 1 448.0 0.0 5.0 0.0 339.0 0.0 3,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000049792 Bag5 ENSMUST00000160825 ENSMUSP00000123839 TRANSLATION protein_coding stop - 3 59.0 0.0 1.75 0.0 34.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000049792 Bag5 ENSMUST00000160576 ENSMUSP00000125183 TRANSLATION protein_coding - CCDS26185.1 1 447.0 0.0 2.15 0.0 175.7 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000049792 Bag5 ENSMUST00000162953 ENSMUSP00000124861 TRANSLATION protein_coding stop - 3 37.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049792 Bag5 ENSMUST00000054636 ENSMUSP00000051049 TRANSLATION protein_coding - CCDS26185.1 1 447.0 0.0 2.15 0.0 175.7 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000005656 Snx6 ENSMUST00000219781 ENSMUSP00000151460 TRANSLATION nonsense_mediated_decay - - 5 90.0 0.0 2.0 0.0 30.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005656 Snx6 ENSMUST00000219302 - NO_TRANSLATION retained_intron ENSMUSG00000005656 Snx6 ENSMUST00000218934 ENSMUSP00000151488 TRANSLATION protein_coding - - 5 290.0 0.0 7.75 9.7 73.5 0.0 -4,-5 0.1513 12 4.804 MINOR ENSMUSG00000005656 Snx6 ENSMUST00000219865 - NO_TRANSLATION retained_intron ENSMUSG00000005656 Snx6 ENSMUST00000218066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005656 Snx6 ENSMUST00000218337 - NO_TRANSLATION retained_intron ENSMUSG00000005656 Snx6 ENSMUST00000219722 - NO_TRANSLATION retained_intron ENSMUSG00000005656 Snx6 ENSMUST00000005798 ENSMUSP00000005798 TRANSLATION protein_coding - CCDS36447.1 1 406.0 0.0 10.5 32.1 120.4 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000096458 Moap1 ENSMUST00000178384 ENSMUSP00000137010 TRANSLATION protein_coding - CCDS26122.1 2 352.0 0.0 1.0 5.4 416.2 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000096458 Moap1 ENSMUST00000173760 ENSMUSP00000133459 TRANSLATION protein_coding - CCDS26122.1 2 352.0 0.0 1.0 5.4 416.2 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000018581 Dnah11 ENSMUST00000176756 ENSMUSP00000135748 TRANSLATION nonsense_mediated_decay start - 5 1688.0 52.0 28.228 0.0 1974.8 0.0 -4,-6 0.1269 3 -2.0 MINOR ENSMUSG00000018581 Dnah11 ENSMUST00000084806 ENSMUSP00000081867 TRANSLATION protein_coding - CCDS36578.1 1 4488.0 63.0 58.351 0.4 3941.2 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000018581 Dnah11 ENSMUST00000175662 - NO_TRANSLATION retained_intron ENSMUSG00000018581 Dnah11 ENSMUST00000176239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096452 Ighv1-77 ENSMUST00000170551 ENSMUSP00000126332 TRANSLATION IG_V_gene start/stop - - 98.0 9.0 1.0 0.0 55.1 0.0 -4,-5 0.0267 1 -2.0 ALTERNATIVE:2 ENSMUSG00000096452 Ighv1-77 ENSMUST00000198777 ENSMUSP00000143684 TRANSLATION IG_V_gene stop - - 117.0 9.0 1.1 1.0 55.1 0.0 4,-1 0.8526 1 -2.0 PRINCIPAL:5 ENSMUSG00000021188 Trip11 ENSMUST00000177183 ENSMUSP00000134976 TRANSLATION protein_coding start - 5 1691.0 0.0 4.45 0.0 0.0 0.0 -4,-5 0.1653 55 -2.0 MINOR ENSMUSG00000021188 Trip11 ENSMUST00000176728 ENSMUSP00000134992 TRANSLATION protein_coding stop - 1 291.0 0.0 1.4 0.0 0.0 0.0 -2,-5 0.0211 7 -2.0 MINOR ENSMUSG00000021188 Trip11 ENSMUST00000085086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021188 Trip11 ENSMUST00000177480 ENSMUSP00000135128 TRANSLATION nonsense_mediated_decay start - 3 139.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0197 5 -2.0 MINOR ENSMUSG00000021188 Trip11 ENSMUST00000177536 ENSMUSP00000135669 TRANSLATION protein_coding stop - 1 527.0 0.0 1.4 0.0 0.0 0.0 -2,-5 0.0414 16 -2.0 MINOR ENSMUSG00000021188 Trip11 ENSMUST00000021605 ENSMUSP00000021605 TRANSLATION protein_coding - CCDS49143.1 1 1976.0 0.0 5.85 0.0 0.0 0.0 -2,-5 1.0 65 6.0 PRINCIPAL:1 ENSMUSG00000050103 Agmo ENSMUST00000160768 ENSMUSP00000124044 TRANSLATION protein_coding - - 1 114.0 0.0 2.0 0.0 0.0 1.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000050103 Agmo ENSMUST00000049874 ENSMUSP00000051441 TRANSLATION protein_coding - CCDS49052.1 1 447.0 0.0 11.75 9.9 94.3 7.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000050103 Agmo ENSMUST00000160390 ENSMUSP00000125639 TRANSLATION protein_coding - - 1 435.0 0.0 11.0 0.0 94.3 6.0 -4,-7 0.0623 2 10.5 MINOR ENSMUSG00000050103 Agmo ENSMUST00000221949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050103 Agmo ENSMUST00000159998 ENSMUSP00000123801 TRANSLATION nonsense_mediated_decay - - 1 433.0 0.0 11.0 0.0 94.3 6.0 -4,-7 0.07 2 -2.0 MINOR ENSMUSG00000050103 Agmo ENSMUST00000160158 - NO_TRANSLATION retained_intron ENSMUSG00000020961 Ston2 ENSMUST00000170984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020961 Ston2 ENSMUST00000166967 ENSMUSP00000128561 TRANSLATION protein_coding stop - 2 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020961 Ston2 ENSMUST00000170077 ENSMUSP00000126429 TRANSLATION protein_coding stop - 3 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020961 Ston2 ENSMUST00000111609 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020961 Ston2 ENSMUST00000052969 ENSMUSP00000053908 TRANSLATION protein_coding - CCDS26090.1 1 895.0 0.0 0.4 8.8 211.7 0.0 -4,-5 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000020961 Ston2 ENSMUST00000164713 ENSMUSP00000131098 TRANSLATION protein_coding - - 5 898.0 0.0 0.4 0.0 210.3 0.0 -4,-5 0.1861 14 11.916 MINOR ENSMUSG00000020961 Ston2 ENSMUST00000166008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020652 Cenpo ENSMUST00000140975 ENSMUSP00000119136 TRANSLATION protein_coding - CCDS25788.1 1 298.0 0.0 0.0 9.1 25.8 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000020652 Cenpo ENSMUST00000111169 ENSMUSP00000106799 TRANSLATION protein_coding - - 1 205.0 0.0 0.0 0.0 24.5 0.0 -4,-5 0.0187 3 5.7 MINOR ENSMUSG00000020652 Cenpo ENSMUST00000020981 ENSMUSP00000020981 TRANSLATION protein_coding - - 1 177.0 0.0 0.0 0.0 25.8 0.0 -4,-5 0.0202 4 6.0 MINOR ENSMUSG00000020652 Cenpo ENSMUST00000126017 - NO_TRANSLATION retained_intron ENSMUSG00000020652 Cenpo ENSMUST00000146261 ENSMUSP00000116539 TRANSLATION protein_coding start - 3 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000020652 Cenpo ENSMUST00000128466 ENSMUSP00000121258 TRANSLATION protein_coding stop - 3 221.0 0.0 0.0 0.0 24.9 0.0 -2,-5 0.0258 3 -2.0 MINOR ENSMUSG00000020652 Cenpo ENSMUST00000146523 - NO_TRANSLATION retained_intron ENSMUSG00000021281 Tnfaip2 ENSMUST00000156003 - NO_TRANSLATION retained_intron ENSMUSG00000021281 Tnfaip2 ENSMUST00000102745 ENSMUSP00000099806 TRANSLATION protein_coding - CCDS26178.2 1 691.0 0.0 10.83 1.4 373.2 0.0 -4,-2 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000021281 Tnfaip2 ENSMUST00000174298 ENSMUSP00000133317 TRANSLATION nonsense_mediated_decay start - 5 128.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021281 Tnfaip2 ENSMUST00000173581 ENSMUSP00000133807 TRANSLATION nonsense_mediated_decay start - 5 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021281 Tnfaip2 ENSMUST00000174692 ENSMUSP00000133512 TRANSLATION nonsense_mediated_decay start - 5 21.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021281 Tnfaip2 ENSMUST00000129467 ENSMUSP00000133274 TRANSLATION protein_coding stop - 5 115.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000021281 Tnfaip2 ENSMUST00000133865 - NO_TRANSLATION retained_intron ENSMUSG00000021281 Tnfaip2 ENSMUST00000172783 ENSMUSP00000133635 TRANSLATION nonsense_mediated_decay - - 5 151.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000021281 Tnfaip2 ENSMUST00000127028 - NO_TRANSLATION retained_intron ENSMUSG00000021281 Tnfaip2 ENSMUST00000127207 - NO_TRANSLATION retained_intron ENSMUSG00000021281 Tnfaip2 ENSMUST00000109792 ENSMUSP00000105415 TRANSLATION protein_coding - - 1 708.0 0.0 10.83 0.0 351.1 0.0 -4,-2 0.1188 7 10.674 MINOR ENSMUSG00000021095 Gsc ENSMUST00000021513 ENSMUSP00000021513 TRANSLATION protein_coding - CCDS26153.1 1 256.0 0.0 1.6 11.3 79.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000011158 Brf1 ENSMUST00000222247 - NO_TRANSLATION retained_intron ENSMUSG00000011158 Brf1 ENSMUST00000223037 - NO_TRANSLATION retained_intron ENSMUSG00000011158 Brf1 ENSMUST00000221537 - NO_TRANSLATION retained_intron ENSMUSG00000011158 Brf1 ENSMUST00000221415 - NO_TRANSLATION retained_intron ENSMUSG00000011158 Brf1 ENSMUST00000221409 - NO_TRANSLATION retained_intron ENSMUSG00000011158 Brf1 ENSMUST00000221680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011158 Brf1 ENSMUST00000011302 ENSMUSP00000011302 TRANSLATION protein_coding - CCDS49195.1 5 676.0 4.0 3.895 7.5 255.0 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000011158 Brf1 ENSMUST00000221754 - NO_TRANSLATION retained_intron ENSMUSG00000011158 Brf1 ENSMUST00000223506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020956 Dtd2 ENSMUST00000021339 ENSMUSP00000021339 TRANSLATION protein_coding - CCDS25903.1 1 168.0 0.0 3.25 25.9 120.8 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020956 Dtd2 ENSMUST00000085404 ENSMUSP00000082525 TRANSLATION protein_coding - CCDS83962.1 1 166.0 0.0 2.75 0.0 99.8 0.0 -4,-1 0.0639 4 9.738 MINOR ENSMUSG00000010608 Rbm25 ENSMUST00000182618 ENSMUSP00000138665 TRANSLATION protein_coding stop - 2 174.0 0.0 2.0 0.0 36.6 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000010608 Rbm25 ENSMUST00000183154 ENSMUSP00000138669 TRANSLATION protein_coding stop - 2 102.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000010608 Rbm25 ENSMUST00000183039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010608 Rbm25 ENSMUST00000182633 ENSMUSP00000138625 TRANSLATION nonsense_mediated_decay - - 5 194.0 0.0 0.8 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000010608 Rbm25 ENSMUST00000181983 ENSMUSP00000138572 TRANSLATION protein_coding stop - 1 585.0 0.0 2.55 0.0 38.4 0.0 -4,-2 0.0 10 -2.0 MINOR ENSMUSG00000010608 Rbm25 ENSMUST00000182840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010608 Rbm25 ENSMUST00000182255 - NO_TRANSLATION retained_intron ENSMUSG00000010608 Rbm25 ENSMUST00000182881 - NO_TRANSLATION retained_intron ENSMUSG00000010608 Rbm25 ENSMUST00000182032 - NO_TRANSLATION retained_intron ENSMUSG00000010608 Rbm25 ENSMUST00000183242 - NO_TRANSLATION retained_intron ENSMUSG00000010608 Rbm25 ENSMUST00000182036 ENSMUSP00000138565 TRANSLATION protein_coding stop - 3 194.0 0.0 2.55 0.0 38.4 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000010608 Rbm25 ENSMUST00000183181 - NO_TRANSLATION retained_intron ENSMUSG00000010608 Rbm25 ENSMUST00000048155 ENSMUSP00000048470 TRANSLATION protein_coding - CCDS49107.1 5 838.0 0.0 5.65 2.0 89.8 0.0 -4,-2 1.0 16 13.0 PRINCIPAL:1 ENSMUSG00000010608 Rbm25 ENSMUST00000183128 - NO_TRANSLATION retained_intron ENSMUSG00000010608 Rbm25 ENSMUST00000182450 ENSMUSP00000138416 TRANSLATION nonsense_mediated_decay - - 5 163.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000010608 Rbm25 ENSMUST00000182347 ENSMUSP00000138410 TRANSLATION protein_coding stop - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000010608 Rbm25 ENSMUST00000183282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010608 Rbm25 ENSMUST00000182004 ENSMUSP00000138573 TRANSLATION protein_coding stop - 3 84.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000020593 Lpin1 ENSMUST00000221146 ENSMUSP00000152209 TRANSLATION protein_coding stop - 3 158.0 0.0 0.66 0.0 155.7 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000020593 Lpin1 ENSMUST00000238839 ENSMUSP00000158955 TRANSLATION protein_coding - - - 973.0 8.0 3.185 5.5 610.8 0.0 -4,-5 0.6098 21 15.428 ALTERNATIVE:1 ENSMUSG00000020593 Lpin1 ENSMUST00000222989 ENSMUSP00000152276 TRANSLATION protein_coding - CCDS25823.1 1 891.0 8.0 3.185 7.3 610.8 0.0 -4,-6 1.0 20 16.0 ALTERNATIVE:1 ENSMUSG00000020593 Lpin1 ENSMUST00000067124 ENSMUSP00000070583 TRANSLATION protein_coding - CCDS25822.1 1 924.0 8.0 3.185 7.0 610.8 0.0 -4,-6 0.8931 21 15.904 PRINCIPAL:3 ENSMUSG00000020593 Lpin1 ENSMUST00000223129 - NO_TRANSLATION retained_intron ENSMUSG00000020593 Lpin1 ENSMUST00000239165 ENSMUSP00000159076 TRANSLATION protein_coding - - - 950.0 8.0 3.185 2.8 599.8 0.0 -4,-6 0.2253 21 14.0 MINOR ENSMUSG00000020593 Lpin1 ENSMUST00000221789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020593 Lpin1 ENSMUST00000221297 ENSMUSP00000152285 TRANSLATION protein_coding - CCDS25822.1 5 924.0 8.0 3.185 7.0 610.8 0.0 -4,-6 0.8931 21 15.904 PRINCIPAL:3 ENSMUSG00000020593 Lpin1 ENSMUST00000221230 ENSMUSP00000152466 TRANSLATION protein_coding - CCDS25823.1 1 891.0 8.0 3.185 7.3 610.8 0.0 -4,-6 1.0 20 16.0 ALTERNATIVE:1 ENSMUSG00000020593 Lpin1 ENSMUST00000111067 ENSMUSP00000106696 TRANSLATION protein_coding - CCDS25822.1 1 924.0 8.0 3.185 7.0 610.8 0.0 -4,-6 0.8931 21 15.904 PRINCIPAL:3 ENSMUSG00000076652 Ighv7-3 ENSMUST00000103461 ENSMUSP00000100242 TRANSLATION IG_V_gene stop - - 120.0 6.0 1.1 0.0 57.9 0.0 4,-1 0.8239 3 -2.0 PRINCIPAL:1 ENSMUSG00000021286 Zfyve21 ENSMUST00000222843 ENSMUSP00000152136 TRANSLATION protein_coding - - 3 181.0 8.0 2.85 0.0 155.9 0.0 -4,-1 0.0004 2 10.74 MINOR ENSMUSG00000021286 Zfyve21 ENSMUST00000220616 ENSMUSP00000152084 TRANSLATION protein_coding stop - 3 108.0 7.0 2.15 0.0 115.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000021286 Zfyve21 ENSMUST00000021714 ENSMUSP00000021714 TRANSLATION protein_coding - CCDS56865.1 1 234.0 8.0 4.18 7.1 232.6 0.0 -4,-1 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000021286 Zfyve21 ENSMUST00000221313 - NO_TRANSLATION retained_intron ENSMUSG00000021286 Zfyve21 ENSMUST00000223211 ENSMUSP00000152558 TRANSLATION protein_coding start - 3 263.0 8.0 3.68 0.0 223.6 0.0 -4,-7 0.0066 6 -2.0 MINOR ENSMUSG00000021286 Zfyve21 ENSMUST00000221375 ENSMUSP00000152422 TRANSLATION protein_coding - - 1 253.0 8.0 3.68 6.2 223.5 0.0 -4,-1 0.6136 6 18.156 MINOR ENSMUSG00000021286 Zfyve21 ENSMUST00000221488 - NO_TRANSLATION retained_intron ENSMUSG00000021024 Psma6 ENSMUST00000021412 ENSMUSP00000021412 TRANSLATION protein_coding - CCDS25917.1 1 246.0 0.0 6.0 34.9 236.6 0.0 -4,-7 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000021024 Psma6 ENSMUST00000163070 ENSMUSP00000124781 TRANSLATION protein_coding - CCDS79114.1 5 227.0 0.0 5.25 5.5 182.4 0.0 -4,-2 0.1272 14 7.78 MINOR ENSMUSG00000021024 Psma6 ENSMUST00000162972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021024 Psma6 ENSMUST00000162711 ENSMUSP00000123914 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 0.75 0.0 37.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000046791 Riox1 ENSMUST00000053744 ENSMUSP00000057984 TRANSLATION protein_coding - CCDS26033.1 - 603.0 3.0 1.0 0.1 275.5 0.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000042063 Zfp386 ENSMUST00000073551 ENSMUSP00000073241 TRANSLATION protein_coding - CCDS59580.1 1 591.0 36.0 0.6 0.1 285.3 0.0 -4,-5 0.2851 - 14.0 ALTERNATIVE:2 ENSMUSG00000042063 Zfp386 ENSMUST00000182566 - NO_TRANSLATION retained_intron ENSMUSG00000042063 Zfp386 ENSMUST00000183125 ENSMUSP00000138305 TRANSLATION protein_coding - CCDS26209.1 1 626.0 36.0 0.6 0.0 288.5 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000042063 Zfp386 ENSMUST00000182883 - NO_TRANSLATION retained_intron ENSMUSG00000036188 Ankmy2 ENSMUST00000220580 - NO_TRANSLATION retained_intron ENSMUSG00000036188 Ankmy2 ENSMUST00000220788 - NO_TRANSLATION retained_intron ENSMUSG00000036188 Ankmy2 ENSMUST00000041640 ENSMUSP00000039484 TRANSLATION protein_coding - CCDS25885.1 1 440.0 8.0 8.5 8.4 85.8 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000094051 Ighv1-36 ENSMUST00000191862 ENSMUSP00000142128 TRANSLATION IG_V_gene stop - - 117.0 5.0 1.1 1.0 56.7 0.0 3,-2 0.8292 - -2.0 PRINCIPAL:1 ENSMUSG00000041481 Serpina3g ENSMUST00000171065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041481 Serpina3g ENSMUST00000171916 ENSMUSP00000129633 TRANSLATION protein_coding stop - 3 100.0 0.0 1.33 0.0 105.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041481 Serpina3g ENSMUST00000170628 ENSMUSP00000126548 TRANSLATION protein_coding stop - 3 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0246 - -2.0 MINOR ENSMUSG00000041481 Serpina3g ENSMUST00000043315 ENSMUSP00000041250 TRANSLATION protein_coding - - 1 248.0 0.0 3.13 0.0 230.7 0.0 -4,-5 0.7527 - 12.0 PRINCIPAL:1 ENSMUSG00000020659 Cbll1 ENSMUST00000188326 ENSMUSP00000139809 TRANSLATION protein_coding - CCDS56835.1 2 332.0 12.0 2.3 0.0 0.0 0.0 -4,-5 0.1211 7 12.0 MINOR ENSMUSG00000020659 Cbll1 ENSMUST00000185739 ENSMUSP00000141007 TRANSLATION protein_coding - - 1 490.0 12.0 2.3 11.7 0.0 0.0 -4,-5 0.8653 9 15.0 ALTERNATIVE:1 ENSMUSG00000020659 Cbll1 ENSMUST00000064240 ENSMUSP00000063266 TRANSLATION protein_coding - - 5 488.0 12.0 2.3 11.7 0.0 0.0 -4,-5 0.8514 9 15.0 ALTERNATIVE:1 ENSMUSG00000020659 Cbll1 ENSMUST00000101499 ENSMUSP00000099038 TRANSLATION protein_coding - CCDS56834.1 1 491.0 12.0 2.3 11.7 0.0 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:4 ENSMUSG00000012211 Tex22 ENSMUST00000012355 ENSMUSP00000012355 TRANSLATION protein_coding - CCDS26203.1 1 189.0 0.0 0.0 0.4 0.0 0.0 -4,-2 0.885 1 0.0 PRINCIPAL:1 ENSMUSG00000012211 Tex22 ENSMUST00000109729 ENSMUSP00000105351 TRANSLATION protein_coding - CCDS26203.1 1 189.0 0.0 0.0 0.4 0.0 0.0 -4,-2 0.885 1 0.0 PRINCIPAL:1 ENSMUSG00000012211 Tex22 ENSMUST00000146107 ENSMUSP00000116272 TRANSLATION protein_coding - CCDS26203.1 2 189.0 0.0 0.0 0.4 0.0 0.0 -4,-2 0.885 1 0.0 PRINCIPAL:1 ENSMUSG00000012211 Tex22 ENSMUST00000155492 ENSMUSP00000120443 TRANSLATION protein_coding stop - 3 30.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0286 1 -2.0 MINOR ENSMUSG00000051726 Kcnf1 ENSMUST00000170580 ENSMUSP00000131480 TRANSLATION protein_coding - - - 493.0 0.0 0.5 12.5 230.1 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000094241 Ighv1-24 ENSMUST00000103509 ENSMUSP00000100290 TRANSLATION IG_V_gene start/stop - - 98.0 3.0 1.0 0.0 37.9 0.0 -4,-7 0.0634 - -2.0 ALTERNATIVE:2 ENSMUSG00000094241 Ighv1-24 ENSMUST00000191861 ENSMUSP00000142245 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 1.0 37.9 0.0 4,-1 0.8569 - -2.0 PRINCIPAL:5 ENSMUSG00000021047 Nova1 ENSMUST00000219886 ENSMUSP00000151337 TRANSLATION protein_coding start - 5 66.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021047 Nova1 ENSMUST00000220258 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021047 Nova1 ENSMUST00000219330 ENSMUSP00000151364 TRANSLATION protein_coding start - 3 112.0 0.0 1.75 0.0 22.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021047 Nova1 ENSMUST00000218829 - NO_TRANSLATION retained_intron ENSMUSG00000021047 Nova1 ENSMUST00000021438 ENSMUSP00000021438 TRANSLATION protein_coding - CCDS49058.1 1 507.0 0.0 2.9 20.5 159.8 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000103939 Ighv3-4 ENSMUST00000193408 ENSMUSP00000141962 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 0.0 55.3 0.0 4,-1 0.833 - -2.0 PRINCIPAL:1 ENSMUSG00000042472 Zfp410 ENSMUST00000223130 - NO_TRANSLATION retained_intron ENSMUSG00000042472 Zfp410 ENSMUST00000221656 ENSMUSP00000152814 TRANSLATION nonsense_mediated_decay - - 2 130.0 0.0 0.36 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042472 Zfp410 ENSMUST00000220832 - NO_TRANSLATION retained_intron ENSMUSG00000042472 Zfp410 ENSMUST00000045931 ENSMUSP00000045550 TRANSLATION protein_coding - CCDS26042.1 1 478.0 20.0 5.687 11.0 81.7 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000042472 Zfp410 ENSMUST00000221490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042472 Zfp410 ENSMUST00000220955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042472 Zfp410 ENSMUST00000222471 ENSMUSP00000152157 TRANSLATION protein_coding start - 3 154.0 4.0 1.627 0.0 20.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042472 Zfp410 ENSMUST00000222506 ENSMUSP00000152295 TRANSLATION nonsense_mediated_decay start - 3 44.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042472 Zfp410 ENSMUST00000222450 ENSMUSP00000152225 TRANSLATION protein_coding start - 3 71.0 6.0 1.5 0.0 15.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042472 Zfp410 ENSMUST00000223355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042472 Zfp410 ENSMUST00000222258 ENSMUSP00000152441 TRANSLATION protein_coding - - 1 347.0 16.0 4.525 0.0 61.0 0.0 -4,-5 0.0034 2 11.496 MINOR ENSMUSG00000042472 Zfp410 ENSMUST00000221867 - NO_TRANSLATION retained_intron ENSMUSG00000042472 Zfp410 ENSMUST00000220931 ENSMUSP00000152098 TRANSLATION protein_coding - - 1 345.0 16.0 4.357 0.0 61.0 0.0 -4,-5 0.0034 2 11.16 MINOR ENSMUSG00000042472 Zfp410 ENSMUST00000222773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042472 Zfp410 ENSMUST00000222606 ENSMUSP00000152160 TRANSLATION nonsense_mediated_decay - - 1 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042472 Zfp410 ENSMUST00000222431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042472 Zfp410 ENSMUST00000222832 ENSMUSP00000152817 TRANSLATION protein_coding - - 2 278.0 12.0 3.375 0.0 45.1 0.0 -4,-5 0.0009 2 5.352 MINOR ENSMUSG00000042472 Zfp410 ENSMUST00000222875 - NO_TRANSLATION retained_intron ENSMUSG00000056459 Zbtb25 ENSMUST00000176102 ENSMUSP00000135853 TRANSLATION protein_coding - CCDS25991.2 5 439.0 8.0 2.18 10.3 88.2 0.0 -4,-7 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000056459 Zbtb25 ENSMUST00000176278 ENSMUSP00000134748 TRANSLATION protein_coding - CCDS25991.2 1 439.0 8.0 2.18 10.3 88.2 0.0 -4,-7 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000056459 Zbtb25 ENSMUST00000176967 ENSMUSP00000135434 TRANSLATION protein_coding stop - 2 101.0 0.0 1.78 0.0 72.8 0.0 -4,-7 0.0018 - -2.0 MINOR ENSMUSG00000056459 Zbtb25 ENSMUST00000176509 ENSMUSP00000135817 TRANSLATION protein_coding - - 2 67.0 0.0 1.198 0.0 49.4 0.0 -4,-6 0.0 - 6.66 MINOR ENSMUSG00000056459 Zbtb25 ENSMUST00000167011 ENSMUSP00000128471 TRANSLATION protein_coding - CCDS25991.2 2 439.0 8.0 2.18 10.3 88.2 0.0 -4,-7 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000056459 Zbtb25 ENSMUST00000176187 ENSMUSP00000135458 TRANSLATION protein_coding stop - 3 140.0 0.0 2.18 0.0 74.1 0.0 -4,-7 0.0249 - -2.0 MINOR ENSMUSG00000008438 Adam21 ENSMUST00000008582 ENSMUSP00000008582 TRANSLATION protein_coding - CCDS26022.1 1 729.0 18.0 0.32 0.1 397.3 0.0 -1,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000044712 Slc38a6 ENSMUST00000101313 ENSMUSP00000098871 TRANSLATION protein_coding - - 1 70.0 0.0 0.9 0.0 42.0 5.0 -1,-4 0.0021 - 0.0 MINOR ENSMUSG00000044712 Slc38a6 ENSMUST00000058139 ENSMUSP00000057153 TRANSLATION nonsense_mediated_decay - - 1 131.0 0.0 0.6 0.0 43.2 7.0 -4,-6 0.0037 - -2.0 MINOR ENSMUSG00000044712 Slc38a6 ENSMUST00000134247 - NO_TRANSLATION retained_intron ENSMUSG00000044712 Slc38a6 ENSMUST00000122920 ENSMUSP00000124386 TRANSLATION protein_coding stop - 5 114.0 0.0 0.6 0.0 43.2 7.0 -4,-6 0.0021 - -2.0 MINOR ENSMUSG00000044712 Slc38a6 ENSMUST00000153941 ENSMUSP00000114870 TRANSLATION protein_coding - - 1 125.0 0.0 0.9 0.0 48.0 7.0 -4,-6 0.0037 - 0.0 MINOR ENSMUSG00000044712 Slc38a6 ENSMUST00000150996 - NO_TRANSLATION retained_intron ENSMUSG00000044712 Slc38a6 ENSMUST00000140523 ENSMUSP00000120810 TRANSLATION protein_coding - CCDS49088.1 1 457.0 0.0 4.192 12.2 252.2 16.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044712 Slc38a6 ENSMUST00000126488 ENSMUSP00000118374 TRANSLATION protein_coding - - 5 131.0 0.0 0.6 0.0 43.2 7.0 -4,-6 0.0037 - 0.0 MINOR ENSMUSG00000020653 Klf11 ENSMUST00000139940 ENSMUSP00000118623 TRANSLATION protein_coding stop - 2 81.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020653 Klf11 ENSMUST00000020982 ENSMUSP00000020982 TRANSLATION protein_coding - CCDS25842.1 1 502.0 12.0 1.0 0.4 65.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000020653 Klf11 ENSMUST00000146894 ENSMUSP00000115340 TRANSLATION protein_coding stop - 3 181.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020653 Klf11 ENSMUST00000144046 ENSMUSP00000121730 TRANSLATION protein_coding stop - 3 179.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048004 Tmem196 ENSMUST00000183694 ENSMUSP00000138921 TRANSLATION protein_coding - CCDS79159.1 3 182.0 0.0 0.0 0.0 0.0 8.0 1,-3 0.2617 - 0.0 MINOR ENSMUSG00000048004 Tmem196 ENSMUST00000184820 ENSMUSP00000138937 TRANSLATION protein_coding start - 3 151.0 0.0 0.0 0.0 0.0 6.0 -4,-5 0.0292 1 -2.0 MINOR ENSMUSG00000048004 Tmem196 ENSMUST00000184209 ENSMUSP00000139033 TRANSLATION nonsense_mediated_decay - - 3 52.0 0.0 0.0 0.0 0.0 2.0 1,-3 0.0663 - -2.0 MINOR ENSMUSG00000048004 Tmem196 ENSMUST00000058644 ENSMUSP00000054994 TRANSLATION protein_coding - CCDS49200.1 5 176.0 0.0 0.0 26.2 0.0 8.0 1,-3 1.0 - 4.0 PRINCIPAL:1 ENSMUSG00000048004 Tmem196 ENSMUST00000184069 ENSMUSP00000139022 TRANSLATION protein_coding start - 5 153.0 0.0 0.0 0.0 0.0 6.0 -4,-5 0.0295 1 -2.0 MINOR ENSMUSG00000048004 Tmem196 ENSMUST00000223374 - NO_TRANSLATION retained_intron ENSMUSG00000076619 Ighj3 ENSMUST00000103428 ENSMUSP00000141736 TRANSLATION IG_J_gene start/stop - - 16.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.5813 - -2.0 PRINCIPAL:1 ENSMUSG00000037486 Asxl2 ENSMUST00000140046 - NO_TRANSLATION retained_intron ENSMUSG00000037486 Asxl2 ENSMUST00000092003 ENSMUSP00000089629 TRANSLATION protein_coding - - 5 597.0 0.0 2.14 0.0 123.1 0.0 -4,-6 0.0429 3 8.0 MINOR ENSMUSG00000037486 Asxl2 ENSMUST00000111215 ENSMUSP00000106846 TRANSLATION protein_coding - - 5 1370.0 8.0 2.14 0.0 209.1 0.0 -4,-6 0.712 12 14.0 ALTERNATIVE:2 ENSMUSG00000037486 Asxl2 ENSMUST00000138740 ENSMUSP00000133639 TRANSLATION nonsense_mediated_decay start - 5 104.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037486 Asxl2 ENSMUST00000153102 ENSMUSP00000117384 TRANSLATION protein_coding - CCDS36395.2 5 1370.0 8.0 2.14 0.0 209.1 0.0 -4,-6 1.0 12 14.0 PRINCIPAL:2 ENSMUSG00000037486 Asxl2 ENSMUST00000219208 - NO_TRANSLATION retained_intron ENSMUSG00000037486 Asxl2 ENSMUST00000144247 ENSMUSP00000116048 TRANSLATION protein_coding stop - 5 403.0 0.0 2.14 0.0 124.3 0.0 -4,-6 0.0423 3 -2.0 MINOR ENSMUSG00000037486 Asxl2 ENSMUST00000152196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034761 Map4k5 ENSMUST00000133688 - NO_TRANSLATION retained_intron ENSMUSG00000034761 Map4k5 ENSMUST00000110570 ENSMUSP00000106199 TRANSLATION protein_coding - - 5 847.0 18.0 8.999 12.1 466.1 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000034761 Map4k5 ENSMUST00000126584 - NO_TRANSLATION retained_intron ENSMUSG00000034761 Map4k5 ENSMUST00000153712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034761 Map4k5 ENSMUST00000124715 - NO_TRANSLATION retained_intron ENSMUSG00000034761 Map4k5 ENSMUST00000147451 - NO_TRANSLATION retained_intron ENSMUSG00000034761 Map4k5 ENSMUST00000153550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034761 Map4k5 ENSMUST00000110567 ENSMUSP00000106196 TRANSLATION protein_coding - - 5 828.0 18.0 8.899 0.0 466.1 0.0 -4,-5 0.1567 15 17.802 MINOR ENSMUSG00000060716 Plekhh1 ENSMUST00000217954 ENSMUSP00000151944 TRANSLATION protein_coding stop - 3 75.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060716 Plekhh1 ENSMUST00000039928 ENSMUSP00000049460 TRANSLATION protein_coding - CCDS49097.1 1 1356.0 0.0 6.817 0.4 231.3 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000060716 Plekhh1 ENSMUST00000219956 ENSMUSP00000151747 TRANSLATION protein_coding - CCDS49097.1 1 1356.0 0.0 6.817 0.4 231.3 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000060716 Plekhh1 ENSMUST00000219946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041992 Rapgef5 ENSMUST00000222105 ENSMUSP00000152875 TRANSLATION protein_coding - - 1 612.0 0.0 11.07 0.0 221.3 0.0 -4,-7 0.0024 4 4.344 MINOR ENSMUSG00000041992 Rapgef5 ENSMUST00000221225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041992 Rapgef5 ENSMUST00000223040 - NO_TRANSLATION retained_intron ENSMUSG00000041992 Rapgef5 ENSMUST00000220781 ENSMUSP00000152479 TRANSLATION protein_coding stop - 1 359.0 0.0 2.125 0.0 56.8 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000041992 Rapgef5 ENSMUST00000222035 - NO_TRANSLATION retained_intron ENSMUSG00000041992 Rapgef5 ENSMUST00000109691 ENSMUSP00000105313 TRANSLATION protein_coding - CCDS36577.1 1 814.0 0.0 13.195 0.0 278.1 0.0 -4,-7 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000041992 Rapgef5 ENSMUST00000222185 ENSMUSP00000152339 TRANSLATION protein_coding - - 1 580.0 0.0 11.32 2.1 221.3 0.0 -4,-7 0.2784 4 5.842 MINOR ENSMUSG00000079108 Srp54c ENSMUST00000218879 ENSMUSP00000151681 TRANSLATION protein_coding - CCDS49067.1 1 504.0 12.0 12.85 35.3 437.9 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000079108 Srp54c ENSMUST00000164243 ENSMUSP00000132835 TRANSLATION protein_coding - CCDS49067.1 5 504.0 12.0 12.85 35.3 437.9 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000034801 Sos2 ENSMUST00000035773 ENSMUSP00000044866 TRANSLATION protein_coding - CCDS59573.1 5 1332.0 0.0 17.9 18.4 400.2 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:4 ENSMUSG00000034801 Sos2 ENSMUST00000183306 - NO_TRANSLATION retained_intron ENSMUSG00000034801 Sos2 ENSMUST00000182646 - NO_TRANSLATION retained_intron ENSMUSG00000034801 Sos2 ENSMUST00000183277 ENSMUSP00000138793 TRANSLATION protein_coding - - 5 1333.0 0.0 17.9 18.4 406.5 0.0 -4,-5 0.8716 11 12.0 ALTERNATIVE:1 ENSMUSG00000034801 Sos2 ENSMUST00000182396 ENSMUSP00000138589 TRANSLATION protein_coding - - 5 1300.0 0.0 16.9 2.2 382.4 0.0 -4,-5 0.1626 11 5.612 MINOR ENSMUSG00000034801 Sos2 ENSMUST00000182838 - NO_TRANSLATION retained_intron ENSMUSG00000034801 Sos2 ENSMUST00000182123 - NO_TRANSLATION retained_intron ENSMUSG00000021111 Papola ENSMUST00000172089 ENSMUSP00000131729 TRANSLATION protein_coding start - 2 120.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000021111 Papola ENSMUST00000166471 ENSMUSP00000132353 TRANSLATION protein_coding start - 5 419.0 0.0 4.514 0.0 132.6 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000021111 Papola ENSMUST00000164798 ENSMUSP00000125898 TRANSLATION protein_coding start/stop - 5 322.0 0.0 4.014 0.0 90.9 0.0 -4,-5 0.0007 5 -2.0 MINOR ENSMUSG00000021111 Papola ENSMUST00000166735 ENSMUSP00000128908 TRANSLATION protein_coding - - 1 293.0 8.0 7.58 0.0 313.7 1.0 -4,-2 0.0004 4 6.0 MINOR ENSMUSG00000021111 Papola ENSMUST00000166329 ENSMUSP00000131725 TRANSLATION nonsense_mediated_decay - - 5 111.0 3.0 2.83 0.0 56.3 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000021111 Papola ENSMUST00000109901 ENSMUSP00000105527 TRANSLATION protein_coding - CCDS49163.1 1 739.0 8.0 13.174 17.9 510.1 1.0 -4,-2 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000021111 Papola ENSMUST00000169938 ENSMUSP00000130687 TRANSLATION nonsense_mediated_decay - - 1 168.0 6.0 4.33 0.0 103.6 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000021111 Papola ENSMUST00000165584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021111 Papola ENSMUST00000170831 - NO_TRANSLATION retained_intron ENSMUSG00000021111 Papola ENSMUST00000172040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021111 Papola ENSMUST00000021535 ENSMUSP00000021535 TRANSLATION nonsense_mediated_decay - CCDS49163.1 1 739.0 8.0 13.174 17.9 510.1 1.0 -4,-2 1.0 - -2.0 MINOR ENSMUSG00000021111 Papola ENSMUST00000168186 ENSMUSP00000128402 TRANSLATION protein_coding - - 1 732.0 8.0 13.174 0.0 510.1 1.0 -4,-2 0.168 10 18.0 MINOR ENSMUSG00000021111 Papola ENSMUST00000169524 ENSMUSP00000130798 TRANSLATION nonsense_mediated_decay start - 3 95.0 1.0 2.5 0.0 185.5 1.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021111 Papola ENSMUST00000166498 - NO_TRANSLATION retained_intron ENSMUSG00000021111 Papola ENSMUST00000170540 ENSMUSP00000130714 TRANSLATION protein_coding stop - 2 23.0 0.0 0.75 0.0 38.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021111 Papola ENSMUST00000170189 - NO_TRANSLATION retained_intron ENSMUSG00000021111 Papola ENSMUST00000170002 ENSMUSP00000126275 TRANSLATION protein_coding - CCDS84000.1 5 718.0 8.0 13.174 8.4 510.1 1.0 -4,-2 0.8403 11 19.752 MINOR ENSMUSG00000021111 Papola ENSMUST00000163473 ENSMUSP00000131668 TRANSLATION protein_coding - - 5 693.0 8.0 13.174 4.3 510.1 1.0 -4,-2 0.314 11 18.78 MINOR ENSMUSG00000021111 Papola ENSMUST00000163805 - NO_TRANSLATION retained_intron ENSMUSG00000021111 Papola ENSMUST00000164326 ENSMUSP00000125818 TRANSLATION nonsense_mediated_decay - - 3 66.0 0.0 1.0 0.0 34.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000019235 Rps6kl1 ENSMUST00000222232 - NO_TRANSLATION retained_intron ENSMUSG00000019235 Rps6kl1 ENSMUST00000221972 ENSMUSP00000152336 TRANSLATION protein_coding - CCDS36496.1 1 544.0 0.0 2.8 5.4 144.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000019235 Rps6kl1 ENSMUST00000019379 ENSMUSP00000019379 TRANSLATION protein_coding - - 1 442.0 0.0 0.6 0.0 40.8 0.0 -4,-5 0.0 - 1.284 MINOR ENSMUSG00000019235 Rps6kl1 ENSMUST00000223399 - NO_TRANSLATION retained_intron ENSMUSG00000096499 Ighv1-5 ENSMUST00000191803 ENSMUSP00000141537 TRANSLATION IG_V_gene stop - - 117.0 5.0 1.1 1.0 58.1 0.0 -2,-4 0.7994 2 -2.0 PRINCIPAL:5 ENSMUSG00000096499 Ighv1-5 ENSMUST00000103494 ENSMUSP00000100275 TRANSLATION IG_V_gene start/stop - - 98.0 5.0 1.0 0.0 58.1 0.0 -4,-7 0.0337 2 -2.0 ALTERNATIVE:2 ENSMUSG00000001497 Pax9 ENSMUST00000153250 ENSMUSP00000117928 TRANSLATION protein_coding - CCDS25924.1 5 342.0 0.0 1.0 20.9 238.0 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000001497 Pax9 ENSMUST00000152848 - NO_TRANSLATION retained_intron ENSMUSG00000001497 Pax9 ENSMUST00000001538 ENSMUSP00000001538 TRANSLATION protein_coding - CCDS25924.1 1 342.0 0.0 1.0 20.9 238.0 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000060121 Gemin2 ENSMUST00000182188 - NO_TRANSLATION retained_intron ENSMUSG00000060121 Gemin2 ENSMUST00000182710 - NO_TRANSLATION retained_intron ENSMUSG00000060121 Gemin2 ENSMUST00000021379 ENSMUSP00000021379 TRANSLATION protein_coding - CCDS36457.1 1 269.0 0.0 7.0 5.8 263.8 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000044715 Gskip ENSMUST00000051934 ENSMUSP00000057939 TRANSLATION protein_coding - CCDS49161.1 1 144.0 0.0 2.0 0.4 115.2 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000044715 Gskip ENSMUST00000222841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044715 Gskip ENSMUST00000222284 ENSMUSP00000152722 TRANSLATION protein_coding - - 1 97.0 0.0 1.198 0.0 59.0 0.0 -4,-5 0.0 1 6.222 MINOR ENSMUSG00000033713 Foxn3 ENSMUST00000222261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033713 Foxn3 ENSMUST00000176829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033713 Foxn3 ENSMUST00000177451 ENSMUSP00000135082 TRANSLATION protein_coding - CCDS26103.1 1 457.0 0.0 1.68 1.8 116.4 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000033713 Foxn3 ENSMUST00000177269 ENSMUSP00000135814 TRANSLATION protein_coding stop - 5 191.0 0.0 0.93 0.0 110.1 0.0 -4,-7 0.0063 1 -2.0 MINOR ENSMUSG00000033713 Foxn3 ENSMUST00000176928 ENSMUSP00000135749 TRANSLATION protein_coding stop - 2 186.0 0.0 0.6 0.0 101.3 0.0 -4,-7 0.0034 1 -2.0 MINOR ENSMUSG00000033713 Foxn3 ENSMUST00000222458 ENSMUSP00000152082 TRANSLATION nonsense_mediated_decay start - 5 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033713 Foxn3 ENSMUST00000222918 - NO_TRANSLATION retained_intron ENSMUSG00000033713 Foxn3 ENSMUST00000223484 ENSMUSP00000152328 TRANSLATION protein_coding stop - 5 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0362 - -2.0 MINOR ENSMUSG00000033713 Foxn3 ENSMUST00000176959 - NO_TRANSLATION retained_intron ENSMUSG00000033713 Foxn3 ENSMUST00000046859 ENSMUSP00000036035 TRANSLATION protein_coding - CCDS26103.1 1 457.0 0.0 1.68 1.8 116.4 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000033713 Foxn3 ENSMUST00000085108 ENSMUSP00000082189 TRANSLATION protein_coding - CCDS26103.1 5 457.0 0.0 1.68 1.8 116.4 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000033713 Foxn3 ENSMUST00000176311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033713 Foxn3 ENSMUST00000221283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033713 Foxn3 ENSMUST00000177287 - NO_TRANSLATION retained_intron ENSMUSG00000094505 Ighv8-6 ENSMUST00000193145 ENSMUSP00000141906 TRANSLATION IG_V_gene stop - - 118.0 3.0 1.0 0.0 46.7 0.0 2,-3 0.8266 - -2.0 PRINCIPAL:5 ENSMUSG00000094505 Ighv8-6 ENSMUST00000103524 ENSMUSP00000100305 TRANSLATION IG_V_gene start/stop - - 100.0 3.0 1.0 0.0 46.7 0.0 -4,-5 0.0605 - -2.0 ALTERNATIVE:2 ENSMUSG00000113786 Gm49384 ENSMUST00000222699 ENSMUSP00000152361 TRANSLATION nonsense_mediated_decay,RT start - 5 103.0 0.0 1.75 0.0 41.5 0.0 -4,-7 0.7456 - -2.0 PRINCIPAL:1 ENSMUSG00000093876 Ighd5-3 ENSMUST00000179262 ENSMUSP00000141703 TRANSLATION IG_D_gene start/stop - - 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021051 Ppp2r5e ENSMUST00000218012 ENSMUSP00000151624 TRANSLATION nonsense_mediated_decay - - 1 63.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021051 Ppp2r5e ENSMUST00000218930 - NO_TRANSLATION retained_intron ENSMUSG00000021051 Ppp2r5e ENSMUST00000218716 ENSMUSP00000151905 TRANSLATION protein_coding stop - 5 50.0 0.0 1.33 0.0 45.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021051 Ppp2r5e ENSMUST00000220035 ENSMUSP00000151427 TRANSLATION protein_coding - - 1 433.0 0.0 10.5 0.0 494.5 0.0 -4,-6 0.011 7 3.84 MINOR ENSMUSG00000021051 Ppp2r5e ENSMUST00000021447 ENSMUSP00000021447 TRANSLATION protein_coding - CCDS25983.1 1 467.0 0.0 11.58 32.2 645.6 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000021112 Pals1 ENSMUST00000219180 - NO_TRANSLATION retained_intron ENSMUSG00000021112 Pals1 ENSMUST00000082024 ENSMUSP00000080683 TRANSLATION protein_coding - CCDS26001.1 1 675.0 14.0 9.2 26.9 381.8 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000021112 Pals1 ENSMUST00000219667 ENSMUSP00000151872 TRANSLATION protein_coding stop - 5 93.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000021112 Pals1 ENSMUST00000219197 ENSMUSP00000151349 TRANSLATION nonsense_mediated_decay - - 1 285.0 0.0 2.75 0.0 115.3 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021112 Pals1 ENSMUST00000218726 - NO_TRANSLATION retained_intron ENSMUSG00000096150 Ighv1-85 ENSMUST00000103552 ENSMUSP00000100333 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.1 1.0 60.4 0.0 3,-2 0.8296 1 -2.0 PRINCIPAL:1 ENSMUSG00000021097 Clmn ENSMUST00000223342 ENSMUSP00000152070 TRANSLATION nonsense_mediated_decay - - 1 927.0 0.0 5.515 0.0 141.2 0.0 -4,-5 0.1018 - -2.0 MINOR ENSMUSG00000021097 Clmn ENSMUST00000222412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021097 Clmn ENSMUST00000223177 ENSMUSP00000152097 TRANSLATION nonsense_mediated_decay - - 1 927.0 0.0 5.515 0.0 141.2 0.0 -4,-5 0.1018 - -2.0 MINOR ENSMUSG00000021097 Clmn ENSMUST00000223103 ENSMUSP00000152228 TRANSLATION nonsense_mediated_decay - - 1 927.0 0.0 5.515 0.0 141.2 0.0 -4,-5 0.1018 20 -2.0 MINOR ENSMUSG00000021097 Clmn ENSMUST00000222323 ENSMUSP00000152467 TRANSLATION protein_coding start - 3 139.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021097 Clmn ENSMUST00000109937 ENSMUSP00000105563 TRANSLATION protein_coding - CCDS36541.1 1 1052.0 0.0 5.515 0.4 141.2 1.0 -4,-5 0.5627 22 8.0 ALTERNATIVE:2 ENSMUSG00000021097 Clmn ENSMUST00000109936 ENSMUSP00000105562 TRANSLATION protein_coding - CCDS36540.1 1 1021.0 0.0 5.515 0.4 141.2 1.0 -4,-5 1.0 22 8.0 PRINCIPAL:2 ENSMUSG00000035614 Togaram1 ENSMUST00000223311 - NO_TRANSLATION retained_intron ENSMUSG00000035614 Togaram1 ENSMUST00000222425 - NO_TRANSLATION retained_intron ENSMUSG00000035614 Togaram1 ENSMUST00000221836 ENSMUSP00000152271 TRANSLATION nonsense_mediated_decay start - 1 677.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.1212 5 -2.0 MINOR ENSMUSG00000035614 Togaram1 ENSMUST00000222473 - NO_TRANSLATION retained_intron ENSMUSG00000035614 Togaram1 ENSMUST00000220487 - NO_TRANSLATION retained_intron ENSMUSG00000035614 Togaram1 ENSMUST00000066296 ENSMUSP00000070382 TRANSLATION protein_coding - CCDS49075.1 1 1776.0 0.0 0.6 0.4 0.0 0.0 -4,-7 0.7936 14 6.0 ALTERNATIVE:2 ENSMUSG00000035614 Togaram1 ENSMUST00000223166 ENSMUSP00000152616 TRANSLATION protein_coding - - 1 1826.0 0.0 0.6 0.4 0.0 0.0 -4,-7 0.8522 14 6.0 PRINCIPAL:4 ENSMUSG00000035614 Togaram1 ENSMUST00000221400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037169 Mycn ENSMUST00000151534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037169 Mycn ENSMUST00000130990 ENSMUSP00000114225 TRANSLATION protein_coding - CCDS25818.1 1 462.0 0.0 0.8 4.3 541.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000037169 Mycn ENSMUST00000043396 ENSMUSP00000045993 TRANSLATION protein_coding - CCDS25818.1 1 462.0 0.0 0.8 4.3 541.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040877 Wdr25 ENSMUST00000221510 ENSMUSP00000152632 TRANSLATION protein_coding - - 1 183.0 0.0 1.498 0.0 14.0 0.0 -4,-5 0.0009 - 4.386 MINOR ENSMUSG00000040877 Wdr25 ENSMUST00000167816 ENSMUSP00000129855 TRANSLATION protein_coding - CCDS49172.1 5 535.0 0.0 3.1 3.8 52.8 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000040877 Wdr25 ENSMUST00000220667 ENSMUSP00000152191 TRANSLATION protein_coding stop - 2 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040877 Wdr25 ENSMUST00000223054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040877 Wdr25 ENSMUST00000047115 ENSMUSP00000035553 TRANSLATION protein_coding - CCDS49172.1 1 535.0 0.0 3.1 3.8 52.8 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000040877 Wdr25 ENSMUST00000220495 ENSMUSP00000152825 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040877 Wdr25 ENSMUST00000221377 ENSMUSP00000152858 TRANSLATION protein_coding stop - 3 144.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036295 Lrrn3 ENSMUST00000043884 ENSMUSP00000043818 TRANSLATION protein_coding - CCDS25896.1 1 707.0 0.0 0.8 22.7 193.6 0.0 1,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021190 Lgmn ENSMUST00000021607 ENSMUSP00000021607 TRANSLATION protein_coding - CCDS26119.1 1 435.0 0.0 10.8 13.7 387.9 0.0 3,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000021190 Lgmn ENSMUST00000110020 ENSMUSP00000105647 TRANSLATION protein_coding - CCDS26119.1 1 435.0 0.0 10.8 13.7 387.9 0.0 3,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000021190 Lgmn ENSMUST00000146499 - NO_TRANSLATION retained_intron ENSMUSG00000095079 Igha ENSMUST00000194738 ENSMUSP00000142171 TRANSLATION IG_C_gene start - - 389.0 6.0 3.0 0.0 155.6 0.0 -4,-7 0.6765 10 -2.0 ALTERNATIVE:2 ENSMUSG00000095079 Igha ENSMUST00000178282 ENSMUSP00000137226 TRANSLATION IG_C_gene start - - 344.0 6.0 3.5 0.0 155.6 0.0 -4,-7 0.0511 11 -2.0 PRINCIPAL:3 ENSMUSG00000021250 Fos ENSMUST00000136122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021250 Fos ENSMUST00000134311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021250 Fos ENSMUST00000140525 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021250 Fos ENSMUST00000021674 ENSMUSP00000021674 TRANSLATION protein_coding - CCDS26059.1 1 380.0 0.0 1.4 11.3 35.0 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000021282 Eif5 ENSMUST00000221292 ENSMUSP00000152507 TRANSLATION nonsense_mediated_decay - - 3 90.0 0.0 0.75 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000021282 Eif5 ENSMUST00000222757 ENSMUSP00000152300 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 1.58 0.0 42.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000021282 Eif5 ENSMUST00000221243 - NO_TRANSLATION retained_intron ENSMUSG00000021282 Eif5 ENSMUST00000222441 ENSMUSP00000152534 TRANSLATION protein_coding stop - 3 146.0 4.0 3.66 0.0 146.1 0.0 -4,-7 0.0003 8 -2.0 MINOR ENSMUSG00000021282 Eif5 ENSMUST00000222375 ENSMUSP00000152791 TRANSLATION protein_coding - CCDS26180.1 1 429.0 4.0 9.04 16.5 224.9 0.0 -4,-7 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000021282 Eif5 ENSMUST00000221101 ENSMUSP00000152135 TRANSLATION nonsense_mediated_decay start - 3 36.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021282 Eif5 ENSMUST00000221648 - NO_TRANSLATION retained_intron ENSMUSG00000021282 Eif5 ENSMUST00000223135 - NO_TRANSLATION retained_intron ENSMUSG00000021282 Eif5 ENSMUST00000166123 ENSMUSP00000126825 TRANSLATION protein_coding - CCDS26180.1 1 429.0 4.0 9.04 16.5 224.9 0.0 -4,-7 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000021282 Eif5 ENSMUST00000223437 - NO_TRANSLATION retained_intron ENSMUSG00000021282 Eif5 ENSMUST00000221872 - NO_TRANSLATION retained_intron ENSMUSG00000021282 Eif5 ENSMUST00000221363 - NO_TRANSLATION retained_intron ENSMUSG00000021282 Eif5 ENSMUST00000220803 ENSMUSP00000152531 TRANSLATION protein_coding stop - 3 34.0 0.0 1.08 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021282 Eif5 ENSMUST00000220918 - NO_TRANSLATION retained_intron ENSMUSG00000021282 Eif5 ENSMUST00000222388 ENSMUSP00000152221 TRANSLATION protein_coding - - 1 375.0 4.0 7.21 0.0 224.9 0.0 -4,-7 0.0123 15 12.34 MINOR ENSMUSG00000021282 Eif5 ENSMUST00000222234 ENSMUSP00000152459 TRANSLATION protein_coding stop - 1 159.0 4.0 4.16 0.0 146.1 0.0 -4,-7 0.0003 10 -2.0 MINOR ENSMUSG00000021282 Eif5 ENSMUST00000050993 ENSMUSP00000061616 TRANSLATION protein_coding - CCDS26180.1 1 429.0 4.0 9.04 16.5 224.9 0.0 -4,-7 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000055884 Fancm ENSMUST00000222086 - NO_TRANSLATION retained_intron ENSMUSG00000055884 Fancm ENSMUST00000223401 - NO_TRANSLATION retained_intron ENSMUSG00000055884 Fancm ENSMUST00000223051 - NO_TRANSLATION retained_intron ENSMUSG00000055884 Fancm ENSMUST00000221838 ENSMUSP00000152396 TRANSLATION protein_coding start/stop - 3 167.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055884 Fancm ENSMUST00000221175 ENSMUSP00000152223 TRANSLATION protein_coding start - 5 121.0 0.0 1.0 0.0 28.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000055884 Fancm ENSMUST00000221937 ENSMUSP00000152885 TRANSLATION protein_coding start/stop - 5 109.0 0.0 0.8546 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000055884 Fancm ENSMUST00000222521 - NO_TRANSLATION retained_intron ENSMUSG00000055884 Fancm ENSMUST00000058889 ENSMUSP00000054797 TRANSLATION protein_coding - CCDS25941.1 1 2021.0 8.0 10.4946 0.0 324.6 0.0 -4,-1 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000055884 Fancm ENSMUST00000222540 ENSMUSP00000152854 TRANSLATION nonsense_mediated_decay - - 1 664.0 8.0 5.9646 0.0 134.4 0.0 -4,-1 0.0014 1 -2.0 MINOR ENSMUSG00000021178 Psmc1 ENSMUST00000221308 - NO_TRANSLATION retained_intron ENSMUSG00000021178 Psmc1 ENSMUST00000222374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021178 Psmc1 ENSMUST00000021595 ENSMUSP00000021595 TRANSLATION protein_coding - CCDS36522.1 1 440.0 12.0 8.0 34.2 146.0 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000021178 Psmc1 ENSMUST00000223078 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094087 Ighv1-61 ENSMUST00000103531 ENSMUSP00000100312 TRANSLATION IG_V_gene stop - - 117.0 9.0 1.0 1.0 58.9 0.0 4,-1 0.8368 1 -2.0 PRINCIPAL:1 ENSMUSG00000020993 Trappc6b ENSMUST00000218150 - NO_TRANSLATION retained_intron ENSMUSG00000020993 Trappc6b ENSMUST00000021380 ENSMUSP00000021380 TRANSLATION protein_coding - CCDS25932.1 1 158.0 0.0 4.25 29.7 149.5 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000020993 Trappc6b ENSMUST00000217873 - NO_TRANSLATION retained_intron ENSMUSG00000020993 Trappc6b ENSMUST00000217660 ENSMUSP00000151733 TRANSLATION nonsense_mediated_decay - - 1 66.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020993 Trappc6b ENSMUST00000217863 ENSMUSP00000151772 TRANSLATION protein_coding - - 2 121.0 0.0 3.25 0.8 109.0 0.0 -4,-7 0.0105 2 7.572 MINOR ENSMUSG00000020993 Trappc6b ENSMUST00000218686 ENSMUSP00000151224 TRANSLATION protein_coding - - 3 96.0 0.0 2.5 0.0 51.1 0.0 -4,-7 0.0 3 2.598 MINOR ENSMUSG00000020993 Trappc6b ENSMUST00000218799 ENSMUSP00000151903 TRANSLATION nonsense_mediated_decay - - 3 50.0 0.0 1.5 0.0 26.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000020993 Trappc6b ENSMUST00000219652 - NO_TRANSLATION retained_intron ENSMUSG00000020993 Trappc6b ENSMUST00000218523 - NO_TRANSLATION retained_intron ENSMUSG00000020993 Trappc6b ENSMUST00000218936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076710 Ighv1-49 ENSMUST00000103519 ENSMUSP00000100300 TRANSLATION IG_V_gene start/stop - - 98.0 3.0 1.0 0.0 48.1 0.0 -4,-7 0.0628 - -2.0 ALTERNATIVE:2 ENSMUSG00000076710 Ighv1-49 ENSMUST00000192724 ENSMUSP00000141739 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 1.0 48.1 0.0 2,-2 0.8604 - -2.0 PRINCIPAL:5 ENSMUSG00000020561 Polr1f ENSMUST00000218748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020561 Polr1f ENSMUST00000020877 ENSMUSP00000020877 TRANSLATION protein_coding - CCDS25877.1 1 330.0 0.0 3.0 2.1 37.2 0.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000020561 Polr1f ENSMUST00000219758 - NO_TRANSLATION retained_intron ENSMUSG00000020561 Polr1f ENSMUST00000219769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020988 L2hgdh ENSMUST00000222972 - NO_TRANSLATION retained_intron ENSMUSG00000020988 L2hgdh ENSMUST00000021370 ENSMUSP00000021370 TRANSLATION protein_coding - CCDS25953.1 1 464.0 38.0 6.363 10.3 233.6 0.0 -4,-1 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000020988 L2hgdh ENSMUST00000223387 ENSMUSP00000152394 TRANSLATION nonsense_mediated_decay start - 3 50.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000010529 Gm266 ENSMUST00000010673 ENSMUSP00000010673 TRANSLATION protein_coding - CCDS26179.1 - 200.0 15.0 1.0 1.5 133.2 0.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000021032 Ngb ENSMUST00000110176 ENSMUSP00000105805 TRANSLATION protein_coding - - 3 92.0 10.0 2.0 0.0 31.4 0.0 -4,-7 0.0 1 1.998 MINOR ENSMUSG00000021032 Ngb ENSMUST00000110177 ENSMUSP00000105806 TRANSLATION protein_coding - CCDS79141.1 1 155.0 21.0 4.0 15.3 49.6 0.0 -4,-7 0.9435 3 16.666 MINOR ENSMUSG00000021032 Ngb ENSMUST00000021420 ENSMUSP00000021420 TRANSLATION protein_coding - CCDS36501.1 1 151.0 21.0 4.0 15.3 52.8 0.0 -4,-7 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000021224 Numb ENSMUST00000155112 ENSMUSP00000116863 TRANSLATION protein_coding stop - 5 163.0 0.0 4.33 0.0 118.3 0.0 -4,-7 0.0005 4 -2.0 MINOR ENSMUSG00000021224 Numb ENSMUST00000110298 ENSMUSP00000105927 TRANSLATION nonsense_mediated_decay - - 5 76.0 0.0 1.75 0.0 23.8 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000021224 Numb ENSMUST00000129335 ENSMUSP00000119303 TRANSLATION protein_coding - CCDS49108.1 1 653.0 0.0 5.33 10.7 222.1 0.0 -4,-7 1.0 12 11.0 PRINCIPAL:3 ENSMUSG00000021224 Numb ENSMUST00000117217 ENSMUSP00000113591 TRANSLATION protein_coding - CCDS70400.1 1 593.0 0.0 5.0 9.6 203.7 0.0 -4,-7 0.7752 11 8.001 MINOR ENSMUSG00000021224 Numb ENSMUST00000021647 ENSMUSP00000021647 TRANSLATION protein_coding - CCDS26032.1 1 604.0 0.0 5.33 8.5 222.1 0.0 -4,-7 0.8731 11 10.319 ALTERNATIVE:1 ENSMUSG00000021224 Numb ENSMUST00000126943 ENSMUSP00000122960 TRANSLATION protein_coding stop - 3 65.0 0.0 1.5 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000021224 Numb ENSMUST00000135962 ENSMUSP00000122977 TRANSLATION protein_coding stop - 5 148.0 0.0 3.83 0.0 104.2 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000021224 Numb ENSMUST00000222439 ENSMUSP00000152499 TRANSLATION protein_coding stop - 3 36.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021224 Numb ENSMUST00000125089 - NO_TRANSLATION retained_intron ENSMUSG00000021224 Numb ENSMUST00000154043 ENSMUSP00000117899 TRANSLATION protein_coding - CCDS70401.1 1 642.0 0.0 5.0 10.7 203.7 0.0 -4,-7 0.8904 12 8.34 MINOR ENSMUSG00000021224 Numb ENSMUST00000136848 ENSMUSP00000122597 TRANSLATION protein_coding stop - 3 113.0 0.0 2.75 0.0 54.5 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000021224 Numb ENSMUST00000085215 ENSMUSP00000082311 TRANSLATION nonsense_mediated_decay - - 1 322.0 0.0 5.33 0.0 211.7 0.0 -4,-7 0.0293 10 -2.0 MINOR ENSMUSG00000113149 Gm49383 ENSMUST00000223192 ENSMUSP00000152161 TRANSLATION protein_coding,RT start - 1 259.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5953 - -2.0 PRINCIPAL:1 ENSMUSG00000047002 Msgn1 ENSMUST00000049877 ENSMUSP00000055001 TRANSLATION protein_coding - CCDS25814.1 - 188.0 0.0 0.6 7.6 45.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000020589 Cyria ENSMUST00000221782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020589 Cyria ENSMUST00000069005 ENSMUSP00000068125 TRANSLATION protein_coding - CCDS25817.1 1 323.0 0.0 8.6 34.7 490.4 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000020589 Cyria ENSMUST00000069066 ENSMUSP00000065613 TRANSLATION protein_coding - CCDS25817.1 1 323.0 0.0 8.6 34.7 490.4 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000020589 Cyria ENSMUST00000223061 ENSMUSP00000152252 TRANSLATION protein_coding - CCDS25817.1 5 323.0 0.0 8.6 34.7 490.4 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000020589 Cyria ENSMUST00000222357 - NO_TRANSLATION retained_intron ENSMUSG00000095519 Ighv1-66 ENSMUST00000103537 ENSMUSP00000100318 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.1 1.0 60.0 0.0 3,-2 0.8296 - -2.0 PRINCIPAL:1 ENSMUSG00000099418 Gm6657 ENSMUST00000185497 ENSMUSP00000147287 TRANSLATION nonsense_mediated_decay start - 5 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 - -2.0 MINOR ENSMUSG00000099418 Gm6657 ENSMUST00000211288 ENSMUSP00000147546 TRANSLATION protein_coding - - 5 277.0 0.0 1.6 0.0 0.0 0.0 -4,-5 0.6754 - 6.0 PRINCIPAL:2 ENSMUSG00000099418 Gm6657 ENSMUST00000188791 ENSMUSP00000147743 TRANSLATION protein_coding - - 5 176.0 0.0 1.6 0.1 0.0 0.0 -4,-5 0.073 - 6.0 ALTERNATIVE:2 ENSMUSG00000099418 Gm6657 ENSMUST00000187283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021025 Nfkbia ENSMUST00000021413 ENSMUSP00000021413 TRANSLATION protein_coding - CCDS25918.1 1 314.0 0.0 3.8 13.6 74.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000021025 Nfkbia ENSMUST00000219869 - NO_TRANSLATION retained_intron ENSMUSG00000046782 Ttc6 ENSMUST00000172939 ENSMUSP00000134273 TRANSLATION protein_coding - CCDS83963.1 5 1857.0 0.0 13.065 0.0 79.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046782 Ttc6 ENSMUST00000101398 ENSMUSP00000098946 TRANSLATION protein_coding - - 1 441.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0025 - 0.0 MINOR ENSMUSG00000046782 Ttc6 ENSMUST00000172852 ENSMUSP00000133313 TRANSLATION protein_coding start - 3 48.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021194 Chga ENSMUST00000021610 ENSMUSP00000021610 TRANSLATION protein_coding - CCDS26120.1 1 463.0 0.0 0.95 0.0 391.2 0.0 4,-1 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000021194 Chga ENSMUST00000223100 - NO_TRANSLATION retained_intron ENSMUSG00000021194 Chga ENSMUST00000220839 - NO_TRANSLATION retained_intron ENSMUSG00000047534 Mis18bp1 ENSMUST00000221296 ENSMUSP00000152132 TRANSLATION protein_coding stop - 5 168.0 0.0 0.0 0.0 94.3 0.0 -4,-7 0.0027 - -2.0 MINOR ENSMUSG00000047534 Mis18bp1 ENSMUST00000222244 ENSMUSP00000152490 TRANSLATION protein_coding - - 1 434.0 0.0 0.0 0.0 94.3 0.0 -4,-7 0.0043 2 4.5 MINOR ENSMUSG00000047534 Mis18bp1 ENSMUST00000149986 - NO_TRANSLATION retained_intron ENSMUSG00000047534 Mis18bp1 ENSMUST00000124201 ENSMUSP00000152203 TRANSLATION protein_coding - - 3 54.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000047534 Mis18bp1 ENSMUST00000131753 - NO_TRANSLATION retained_intron ENSMUSG00000047534 Mis18bp1 ENSMUST00000140391 - NO_TRANSLATION retained_intron ENSMUSG00000047534 Mis18bp1 ENSMUST00000052201 ENSMUSP00000052109 TRANSLATION protein_coding - CCDS25942.1 1 998.0 0.0 1.0 0.0 119.3 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000047534 Mis18bp1 ENSMUST00000141456 - NO_TRANSLATION retained_intron ENSMUSG00000021066 Atl1 ENSMUST00000223456 ENSMUSP00000152131 TRANSLATION protein_coding stop - 2 133.0 12.0 2.0 0.0 88.7 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000021066 Atl1 ENSMUST00000220935 - NO_TRANSLATION retained_intron ENSMUSG00000021066 Atl1 ENSMUST00000222246 - NO_TRANSLATION retained_intron ENSMUSG00000021066 Atl1 ENSMUST00000021466 ENSMUSP00000021466 TRANSLATION protein_coding - CCDS36465.1 1 558.0 20.0 9.58 28.4 336.1 0.0 -4,-7 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000021066 Atl1 ENSMUST00000222141 - NO_TRANSLATION retained_intron ENSMUSG00000035142 Nubpl ENSMUST00000159567 ENSMUSP00000125177 TRANSLATION nonsense_mediated_decay start - 3 138.0 0.0 2.5 0.0 80.2 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000035142 Nubpl ENSMUST00000159708 - NO_TRANSLATION retained_intron ENSMUSG00000035142 Nubpl ENSMUST00000159485 - NO_TRANSLATION retained_intron ENSMUSG00000035142 Nubpl ENSMUST00000162111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035142 Nubpl ENSMUST00000040090 ENSMUSP00000044292 TRANSLATION protein_coding - CCDS36442.2 1 319.0 11.0 8.08 7.7 331.5 0.0 1,3 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000114075 Eif1ad18 ENSMUST00000222340 ENSMUSP00000152416 TRANSLATION protein_coding - - - 144.0 0.0 1.0 3.7 64.4 0.0 -4,-5 0.8152 - 13.0 PRINCIPAL:1 ENSMUSG00000090812 Samd15 ENSMUST00000182869 ENSMUSP00000138551 TRANSLATION protein_coding - CCDS70409.1 5 620.0 0.0 3.0 0.0 41.9 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000090812 Samd15 ENSMUST00000183118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090812 Samd15 ENSMUST00000169669 ENSMUSP00000126421 TRANSLATION protein_coding start/stop - - 398.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0036 1 -2.0 MINOR ENSMUSG00000090812 Samd15 ENSMUST00000183251 - NO_TRANSLATION retained_intron ENSMUSG00000075707 Dio3 ENSMUST00000173014 ENSMUSP00000133920 TRANSLATION protein_coding - CCDS26171.2 - 304.0 0.0 1.6 8.2 412.3 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000075707 Dio3 ENSMUST00000097228 ENSMUSP00000094864 TRANSLATION protein_coding - - - 131.0 0.0 1.0 0.0 221.5 0.0 -4,-7 0.0 - 3.75 MINOR ENSMUSG00000021255 Esrrb ENSMUST00000021680 ENSMUSP00000021680 TRANSLATION protein_coding - - 5 433.0 28.0 5.3 25.3 206.9 0.0 -4,-5 0.8286 1 17.628 ALTERNATIVE:1 ENSMUSG00000021255 Esrrb ENSMUST00000116402 ENSMUSP00000112103 TRANSLATION protein_coding - CCDS49117.1 1 438.0 28.0 5.3 13.8 206.9 0.0 -4,-7 0.8561 1 15.912 MINOR ENSMUSG00000021255 Esrrb ENSMUST00000167891 ENSMUSP00000131335 TRANSLATION protein_coding - - 1 433.0 28.0 5.3 25.3 206.9 0.0 -4,-5 0.8286 1 17.628 ALTERNATIVE:1 ENSMUSG00000021255 Esrrb ENSMUST00000136464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021255 Esrrb ENSMUST00000110204 ENSMUSP00000105833 TRANSLATION protein_coding - CCDS26066.2 1 454.0 28.0 5.3 27.8 206.9 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:4 ENSMUSG00000021255 Esrrb ENSMUST00000110203 ENSMUSP00000105832 TRANSLATION protein_coding - - 1 378.0 25.0 4.3 0.0 174.3 0.0 -4,-5 0.0 1 10.004 MINOR ENSMUSG00000042628 Zfyve1 ENSMUST00000222448 ENSMUSP00000152864 TRANSLATION protein_coding stop - 3 175.0 4.0 0.132 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000042628 Zfyve1 ENSMUST00000221228 - NO_TRANSLATION retained_intron ENSMUSG00000042628 Zfyve1 ENSMUST00000223380 - NO_TRANSLATION retained_intron ENSMUSG00000042628 Zfyve1 ENSMUST00000048319 ENSMUSP00000042224 TRANSLATION protein_coding - CCDS26028.1 1 777.0 36.0 2.032 23.7 114.3 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000042628 Zfyve1 ENSMUST00000223222 - NO_TRANSLATION retained_intron ENSMUSG00000042628 Zfyve1 ENSMUST00000221919 ENSMUSP00000152501 TRANSLATION protein_coding - CCDS26028.1 1 777.0 36.0 2.032 23.7 114.3 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000020660 Pomc ENSMUST00000218089 ENSMUSP00000151367 TRANSLATION protein_coding - CCDS25785.1 1 235.0 0.0 0.2 0.1 231.0 0.0 2,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000020660 Pomc ENSMUST00000219543 ENSMUSP00000151504 TRANSLATION protein_coding - CCDS25785.1 1 235.0 0.0 0.2 0.1 231.0 0.0 2,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000020660 Pomc ENSMUST00000218169 ENSMUSP00000151769 TRANSLATION protein_coding stop - 2 79.0 0.0 0.0 0.0 83.5 0.0 2,-2 0.0018 - -2.0 MINOR ENSMUSG00000020660 Pomc ENSMUST00000020990 ENSMUSP00000020990 TRANSLATION protein_coding - CCDS25785.1 1 235.0 0.0 0.2 0.1 231.0 0.0 2,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000020660 Pomc ENSMUST00000220006 ENSMUSP00000151450 TRANSLATION protein_coding stop - 3 44.0 0.0 0.0 0.0 24.1 0.0 2,-2 0.0018 - -2.0 MINOR ENSMUSG00000071379 Hpcal1 ENSMUST00000071858 ENSMUSP00000071756 TRANSLATION protein_coding - CCDS25830.1 1 193.0 22.0 3.08 36.9 96.0 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000071379 Hpcal1 ENSMUST00000222944 ENSMUSP00000152772 TRANSLATION protein_coding stop - 5 168.0 21.0 2.33 0.0 90.1 0.0 -4,-5 0.0146 6 -2.0 MINOR ENSMUSG00000037466 Tedc1 ENSMUST00000196505 - NO_TRANSLATION retained_intron ENSMUSG00000037466 Tedc1 ENSMUST00000199382 - NO_TRANSLATION retained_intron ENSMUSG00000037466 Tedc1 ENSMUST00000198072 - NO_TRANSLATION retained_intron ENSMUSG00000037466 Tedc1 ENSMUST00000049271 ENSMUSP00000035351 TRANSLATION protein_coding - CCDS49196.1 1 420.0 0.0 0.0 1.4 442.2 0.0 -4,0 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000037466 Tedc1 ENSMUST00000196755 ENSMUSP00000143431 TRANSLATION nonsense_mediated_decay start - 5 139.0 0.0 0.0 0.0 108.9 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000037466 Tedc1 ENSMUST00000200522 ENSMUSP00000143367 TRANSLATION nonsense_mediated_decay start - 3 80.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000054364 Rhob ENSMUST00000067384 ENSMUSP00000067013 TRANSLATION protein_coding - CCDS25799.1 - 196.0 24.0 1.0 32.4 192.5 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000071398 2410004P03Rik ENSMUST00000095823 ENSMUSP00000093503 TRANSLATION protein_coding - CCDS49033.1 1 149.0 0.0 2.9 1.5 29.9 0.0 -4,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000071398 2410004P03Rik ENSMUST00000190691 ENSMUSP00000140390 TRANSLATION protein_coding - CCDS79107.1 2 205.0 0.0 0.4 0.0 0.0 0.0 -4,-1 0.0612 1 0.828 MINOR ENSMUSG00000071398 2410004P03Rik ENSMUST00000189479 ENSMUSP00000140028 TRANSLATION protein_coding stop - 5 118.0 0.0 1.9 0.0 29.9 0.0 -4,-2 0.0083 1 -2.0 MINOR ENSMUSG00000072849 Serpina1e ENSMUST00000085054 ENSMUSP00000082130 TRANSLATION protein_coding - CCDS26142.1 1 413.0 0.0 4.0 6.2 390.3 0.0 4,-1 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000072849 Serpina1e ENSMUST00000122229 ENSMUSP00000113606 TRANSLATION protein_coding - CCDS26142.1 1 413.0 0.0 4.0 6.2 390.3 0.0 4,-1 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000020650 Bcap29 ENSMUST00000177962 ENSMUSP00000137260 TRANSLATION protein_coding - CCDS25864.1 1 240.0 0.0 6.33 19.9 224.5 3.0 -2,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020650 Bcap29 ENSMUST00000218543 - NO_TRANSLATION retained_intron ENSMUSG00000020650 Bcap29 ENSMUST00000218942 - NO_TRANSLATION retained_intron ENSMUSG00000020650 Bcap29 ENSMUST00000020979 ENSMUSP00000020979 TRANSLATION protein_coding - CCDS25864.1 1 240.0 0.0 6.33 19.9 224.5 3.0 -2,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000042507 Mideas ENSMUST00000130038 - NO_TRANSLATION retained_intron ENSMUSG00000042507 Mideas ENSMUST00000220974 ENSMUSP00000152853 TRANSLATION protein_coding stop - 1 1071.0 4.0 4.698 0.0 29.4 0.0 -4,-7 0.3196 18 -2.0 MINOR ENSMUSG00000042507 Mideas ENSMUST00000046266 ENSMUSP00000048120 TRANSLATION protein_coding - CCDS49109.1 1 1089.0 4.0 4.698 1.1 29.4 0.0 -4,-7 1.0 18 17.0 PRINCIPAL:1 ENSMUSG00000042507 Mideas ENSMUST00000110294 ENSMUSP00000105923 TRANSLATION protein_coding - CCDS49109.1 5 1089.0 4.0 4.698 1.1 29.4 0.0 -4,-7 1.0 18 17.0 PRINCIPAL:1 ENSMUSG00000042507 Mideas ENSMUST00000137562 - NO_TRANSLATION retained_intron ENSMUSG00000034501 Pcnx4 ENSMUST00000044352 ENSMUSP00000038916 TRANSLATION protein_coding - CCDS36473.1 1 1177.0 0.0 0.0 2.0 90.3 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000021260 Hhipl1 ENSMUST00000223395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021260 Hhipl1 ENSMUST00000021685 ENSMUSP00000021685 TRANSLATION protein_coding - CCDS36554.1 1 791.0 0.0 7.7 0.4 169.0 0.0 1,-4 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000033454 Zbtb1 ENSMUST00000042779 ENSMUSP00000041955 TRANSLATION protein_coding - CCDS25992.1 1 713.0 19.0 0.0 11.6 69.6 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000036144 Meox2 ENSMUST00000041183 ENSMUSP00000043587 TRANSLATION protein_coding - CCDS25888.1 1 303.0 0.0 1.5 22.4 79.0 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021187 Tc2n ENSMUST00000160830 ENSMUSP00000124287 TRANSLATION protein_coding - CCDS36524.1 1 489.0 0.0 2.15 18.7 40.3 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021187 Tc2n ENSMUST00000110047 ENSMUSP00000105674 TRANSLATION nonsense_mediated_decay - CCDS36524.1 2 489.0 0.0 2.15 18.7 40.3 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000021187 Tc2n ENSMUST00000160715 ENSMUSP00000125099 TRANSLATION protein_coding - - 5 425.0 0.0 1.9 1.0 26.8 0.0 -4,-5 0.0122 5 9.294 MINOR ENSMUSG00000021187 Tc2n ENSMUST00000162735 ENSMUSP00000125288 TRANSLATION protein_coding - CCDS36524.1 1 489.0 0.0 2.15 18.7 40.3 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000093838 Ighv3-1 ENSMUST00000103478 ENSMUSP00000100259 TRANSLATION IG_V_gene stop - - 116.0 6.0 1.0 0.0 51.5 0.0 4,-1 0.8275 - -2.0 PRINCIPAL:1 ENSMUSG00000060950 Trmt61a ENSMUST00000168338 ENSMUSP00000133128 TRANSLATION protein_coding - CCDS26184.1 5 290.0 17.0 3.75 9.9 357.6 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000060950 Trmt61a ENSMUST00000222737 ENSMUSP00000152056 TRANSLATION protein_coding stop - 2 92.0 0.0 1.0 0.0 51.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000060950 Trmt61a ENSMUST00000221089 ENSMUSP00000152280 TRANSLATION protein_coding stop - 3 171.0 15.0 2.5 0.0 203.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000060950 Trmt61a ENSMUST00000084947 ENSMUSP00000082011 TRANSLATION protein_coding - CCDS26184.1 1 290.0 17.0 3.75 9.9 357.6 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000037149 Ddx1 ENSMUST00000221623 ENSMUSP00000152513 TRANSLATION protein_coding stop - 3 190.0 7.0 4.78 0.0 115.3 0.0 -4,-5 0.0004 7 -2.0 MINOR ENSMUSG00000037149 Ddx1 ENSMUST00000071103 ENSMUSP00000065987 TRANSLATION protein_coding - CCDS25819.1 1 740.0 13.0 12.901 34.4 451.4 0.0 -4,-6 1.0 38 22.0 PRINCIPAL:1 ENSMUSG00000037149 Ddx1 ENSMUST00000221028 - NO_TRANSLATION retained_intron ENSMUSG00000020986 Sec23a ENSMUST00000154399 - NO_TRANSLATION retained_intron ENSMUSG00000020986 Sec23a ENSMUST00000165134 ENSMUSP00000126011 TRANSLATION protein_coding - - 5 736.0 4.0 14.815 0.0 575.5 0.0 -4,-6 0.0456 26 14.074 MINOR ENSMUSG00000020986 Sec23a ENSMUST00000169976 - NO_TRANSLATION retained_intron ENSMUSG00000020986 Sec23a ENSMUST00000021375 ENSMUSP00000021375 TRANSLATION protein_coding - CCDS25931.1 1 765.0 4.0 15.565 36.9 582.6 0.0 -4,-5 1.0 26 20.0 PRINCIPAL:1 ENSMUSG00000020986 Sec23a ENSMUST00000134223 - NO_TRANSLATION retained_intron ENSMUSG00000042029 Ncapg2 ENSMUST00000220608 - NO_TRANSLATION retained_intron ENSMUSG00000042029 Ncapg2 ENSMUST00000084828 ENSMUSP00000081889 TRANSLATION protein_coding - CCDS26212.1 5 1138.0 0.0 0.0 11.5 196.3 0.0 -4,-5 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000042029 Ncapg2 ENSMUST00000222761 - NO_TRANSLATION retained_intron ENSMUSG00000042029 Ncapg2 ENSMUST00000221970 ENSMUSP00000152831 TRANSLATION protein_coding stop - 3 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042029 Ncapg2 ENSMUST00000221114 ENSMUSP00000152505 TRANSLATION protein_coding stop - 3 107.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042029 Ncapg2 ENSMUST00000222469 ENSMUSP00000152384 TRANSLATION protein_coding stop - 3 111.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060863 Tcl1b2 ENSMUST00000081379 ENSMUSP00000080115 TRANSLATION protein_coding - CCDS36544.1 1 117.0 0.0 0.0 0.0 115.2 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060863 Tcl1b2 ENSMUST00000146174 ENSMUSP00000121354 TRANSLATION nonsense_mediated_decay - CCDS36544.1 1 117.0 0.0 0.0 0.0 115.2 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000060863 Tcl1b2 ENSMUST00000142230 ENSMUSP00000120367 TRANSLATION protein_coding - - 5 85.0 0.0 0.0 0.0 84.6 0.0 -4,-5 0.0 - 4.164 MINOR ENSMUSG00000045404 Kcnk13 ENSMUST00000162221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045404 Kcnk13 ENSMUST00000177549 ENSMUSP00000136882 TRANSLATION protein_coding - CCDS26106.1 5 405.0 0.0 0.6 9.3 115.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045404 Kcnk13 ENSMUST00000160413 ENSMUSP00000123916 TRANSLATION protein_coding - CCDS26106.1 1 405.0 0.0 0.6 9.3 115.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045404 Kcnk13 ENSMUST00000049788 ENSMUSP00000051846 TRANSLATION protein_coding - CCDS26106.1 1 405.0 0.0 0.6 9.3 115.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037679 Inf2 ENSMUST00000220786 ENSMUSP00000152590 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000037679 Inf2 ENSMUST00000101029 ENSMUSP00000098591 TRANSLATION protein_coding - CCDS36571.1 1 1271.0 0.0 10.54 0.0 478.8 0.0 -4,-5 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000037679 Inf2 ENSMUST00000222275 ENSMUSP00000152851 TRANSLATION protein_coding start - 1 720.0 0.0 6.08 0.0 273.0 0.0 -4,-6 0.0039 12 -2.0 MINOR ENSMUSG00000076633 Ighv5-2 ENSMUST00000195468 ENSMUSP00000141310 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 46.0 0.0 4,-1 0.8285 - -2.0 PRINCIPAL:1 ENSMUSG00000021219 Rgs6 ENSMUST00000191311 ENSMUSP00000140723 TRANSLATION protein_coding stop - 5 495.0 0.0 11.3275 0.0 229.5 0.0 -4,-5 0.081 9 -2.0 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000200861 ENSMUSP00000144118 TRANSLATION protein_coding stop - 3 109.0 0.0 2.979 0.0 57.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000186458 ENSMUSP00000139735 TRANSLATION protein_coding - CCDS79132.1 1 472.0 0.0 11.1475 14.2 229.5 0.0 -4,-5 0.908 9 13.868 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000161801 ENSMUSP00000125256 TRANSLATION protein_coding - - 1 368.0 0.0 7.6675 0.0 110.4 0.0 -4,-5 0.0003 7 0.0 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000186081 ENSMUSP00000140188 TRANSLATION nonsense_mediated_decay - - 5 465.0 0.0 11.1295 11.1 229.5 0.0 -4,-5 0.6337 9 -2.0 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000200911 ENSMUSP00000143801 TRANSLATION protein_coding - CCDS79132.1 1 472.0 0.0 11.1475 14.2 229.5 0.0 -4,-5 0.908 9 13.868 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000186848 ENSMUSP00000141044 TRANSLATION protein_coding - - 5 437.0 0.0 10.5085 5.0 229.5 0.0 -4,-5 0.2139 8 10.826 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000201512 - NO_TRANSLATION retained_intron ENSMUSG00000021219 Rgs6 ENSMUST00000185665 ENSMUSP00000139566 TRANSLATION protein_coding - CCDS79131.1 5 490.0 0.0 11.4775 21.9 229.5 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000021219 Rgs6 ENSMUST00000191352 ENSMUSP00000139718 TRANSLATION protein_coding stop - 5 502.0 0.0 11.3275 0.0 229.5 0.0 -4,-5 0.058 9 -2.0 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000201767 ENSMUSP00000143829 TRANSLATION protein_coding start - 5 221.0 0.0 3.33 0.0 119.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000186309 ENSMUSP00000140701 TRANSLATION protein_coding - CCDS79131.1 5 490.0 0.0 11.4775 21.9 229.5 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000021219 Rgs6 ENSMUST00000186323 ENSMUSP00000141079 TRANSLATION protein_coding - - 5 435.0 0.0 10.1475 2.0 183.8 0.0 -4,-5 0.0365 9 6.792 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000191107 ENSMUSP00000139725 TRANSLATION protein_coding - - 5 505.0 0.0 11.3275 0.1 229.5 0.0 -4,-5 0.0499 9 11.7 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000202210 ENSMUSP00000143961 TRANSLATION protein_coding - CCDS79132.1 5 472.0 0.0 11.1475 14.2 229.5 0.0 -4,-5 0.908 9 13.868 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000201271 ENSMUSP00000144139 TRANSLATION protein_coding stop - 5 206.0 0.0 5.729 0.0 64.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000201602 ENSMUSP00000144044 TRANSLATION protein_coding stop - 5 72.0 0.0 1.569 0.0 24.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000185674 ENSMUSP00000139940 TRANSLATION protein_coding - - 5 453.0 0.0 10.4775 2.0 183.8 0.0 -4,-5 0.037 9 7.452 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000201861 ENSMUSP00000144395 TRANSLATION protein_coding stop - 5 88.0 0.0 2.229 0.0 42.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000101234 ENSMUSP00000098793 TRANSLATION protein_coding stop - 5 456.0 0.0 10.9975 3.0 229.5 0.0 -4,-5 0.1415 9 -2.0 MINOR ENSMUSG00000021219 Rgs6 ENSMUST00000190964 - NO_TRANSLATION retained_intron ENSMUSG00000021219 Rgs6 ENSMUST00000193448 - NO_TRANSLATION retained_intron ENSMUSG00000034157 Cipc ENSMUST00000188046 ENSMUSP00000139742 TRANSLATION nonsense_mediated_decay - - 3 81.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000034157 Cipc ENSMUST00000185434 ENSMUSP00000140769 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034157 Cipc ENSMUST00000187814 ENSMUSP00000141049 TRANSLATION protein_coding - - 1 432.0 0.0 0.4 0.0 347.3 0.0 -4,0 0.8212 1 6.0 PRINCIPAL:2 ENSMUSG00000034157 Cipc ENSMUST00000190588 ENSMUSP00000140595 TRANSLATION nonsense_mediated_decay - - 5 82.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034157 Cipc ENSMUST00000191463 ENSMUSP00000140683 TRANSLATION protein_coding - - 1 429.0 0.0 0.4 0.0 347.3 0.0 -4,-2 0.339 1 6.0 ALTERNATIVE:2 ENSMUSG00000034157 Cipc ENSMUST00000185783 ENSMUSP00000140830 TRANSLATION nonsense_mediated_decay start - 3 79.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000034157 Cipc ENSMUST00000191032 ENSMUSP00000140097 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034157 Cipc ENSMUST00000186499 ENSMUSP00000139553 TRANSLATION protein_coding start/stop - 3 131.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000034157 Cipc ENSMUST00000038369 ENSMUSP00000038630 TRANSLATION protein_coding - CCDS56849.1 1 411.0 0.0 0.4 0.1 347.3 0.0 -4,-2 0.5349 1 6.0 ALTERNATIVE:2 ENSMUSG00000034157 Cipc ENSMUST00000189246 ENSMUSP00000140266 TRANSLATION protein_coding - CCDS56849.1 2 411.0 0.0 0.4 0.1 347.3 0.0 -4,-2 0.5349 1 6.0 ALTERNATIVE:2 ENSMUSG00000034157 Cipc ENSMUST00000188901 - NO_TRANSLATION retained_intron ENSMUSG00000079036 Alkbh1 ENSMUST00000185301 ENSMUSP00000140233 TRANSLATION protein_coding - - - 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0086 - 0.0 MINOR ENSMUSG00000079036 Alkbh1 ENSMUST00000161712 ENSMUSP00000124933 TRANSLATION nonsense_mediated_decay - - 1 68.0 0.0 1.0 0.0 0.0 0.0 -2,0 0.0149 - -2.0 MINOR ENSMUSG00000079036 Alkbh1 ENSMUST00000162247 ENSMUSP00000124360 TRANSLATION nonsense_mediated_decay - - 1 200.0 0.0 4.35 0.1 0.0 0.0 -2,0 0.0394 1 -2.0 MINOR ENSMUSG00000079036 Alkbh1 ENSMUST00000160850 - NO_TRANSLATION retained_intron ENSMUSG00000079036 Alkbh1 ENSMUST00000091090 - NO_TRANSLATION retained_intron ENSMUSG00000079036 Alkbh1 ENSMUST00000176758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079036 Alkbh1 ENSMUST00000160687 ENSMUSP00000124892 TRANSLATION protein_coding start/stop - 3 180.0 10.0 4.5 0.0 0.0 0.0 -4,-7 0.0079 1 -2.0 MINOR ENSMUSG00000079036 Alkbh1 ENSMUST00000162986 ENSMUSP00000125372 TRANSLATION nonsense_mediated_decay - - 3 78.0 0.0 1.066 0.0 0.0 0.0 -2,0 0.0142 - -2.0 MINOR ENSMUSG00000079036 Alkbh1 ENSMUST00000162961 ENSMUSP00000124565 TRANSLATION protein_coding - CCDS49120.1 1 389.0 14.0 8.0 10.9 0.0 0.0 -2,0 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000079036 Alkbh1 ENSMUST00000159079 ENSMUSP00000124445 TRANSLATION nonsense_mediated_decay - - 5 101.0 0.0 2.0 0.0 0.0 0.0 -2,0 0.012 1 -2.0 MINOR ENSMUSG00000079036 Alkbh1 ENSMUST00000160919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079036 Alkbh1 ENSMUST00000160113 ENSMUSP00000124691 TRANSLATION nonsense_mediated_decay - - 1 68.0 0.0 1.0 0.0 0.0 0.0 -2,0 0.0149 - -2.0 MINOR ENSMUSG00000035181 Heatr5a ENSMUST00000218254 - NO_TRANSLATION retained_intron ENSMUSG00000035181 Heatr5a ENSMUST00000217966 ENSMUSP00000151713 TRANSLATION protein_coding start/stop - 3 260.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0332 3 -2.0 MINOR ENSMUSG00000035181 Heatr5a ENSMUST00000219641 - NO_TRANSLATION retained_intron ENSMUSG00000035181 Heatr5a ENSMUST00000040583 ENSMUSP00000043115 TRANSLATION protein_coding - CCDS25902.1 5 2038.0 0.0 0.0 4.3 0.0 0.0 -4,-5 1.0 28 2.0 PRINCIPAL:1 ENSMUSG00000035181 Heatr5a ENSMUST00000220369 - NO_TRANSLATION retained_intron ENSMUSG00000035181 Heatr5a ENSMUST00000218186 - NO_TRANSLATION retained_intron ENSMUSG00000035181 Heatr5a ENSMUST00000219277 - NO_TRANSLATION retained_intron ENSMUSG00000035181 Heatr5a ENSMUST00000218847 - NO_TRANSLATION retained_intron ENSMUSG00000021108 Prkch ENSMUST00000021527 ENSMUSP00000021527 TRANSLATION protein_coding - CCDS25976.1 1 683.0 20.0 9.15 18.1 426.4 0.0 -4,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000021108 Prkch ENSMUST00000221153 ENSMUSP00000152346 TRANSLATION nonsense_mediated_decay - - 1 123.0 0.0 1.0 0.0 56.3 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000021108 Prkch ENSMUST00000119092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021108 Prkch ENSMUST00000220898 - NO_TRANSLATION retained_intron ENSMUSG00000046768 Rhoj ENSMUST00000118602 ENSMUSP00000112379 TRANSLATION protein_coding - - 1 171.0 16.0 3.5 0.0 140.5 0.0 -4,-5 0.0017 - 12.588 MINOR ENSMUSG00000046768 Rhoj ENSMUST00000146096 - NO_TRANSLATION retained_intron ENSMUSG00000046768 Rhoj ENSMUST00000118966 ENSMUSP00000113165 TRANSLATION protein_coding - - 1 167.0 16.0 3.5 0.0 139.8 0.0 -4,-5 0.0017 - 12.546 MINOR ENSMUSG00000046768 Rhoj ENSMUST00000055390 ENSMUSP00000059498 TRANSLATION protein_coding - CCDS25981.1 1 214.0 19.0 4.5 14.4 164.1 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000046768 Rhoj ENSMUST00000172981 ENSMUSP00000134552 TRANSLATION nonsense_mediated_decay start - 2 96.0 9.0 1.0 0.0 42.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000046675 Lyset ENSMUST00000057416 ENSMUSP00000054611 TRANSLATION protein_coding - CCDS49146.1 1 163.0 0.0 0.0 9.6 230.7 0.0 -4,-7 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000096577 Ighv1-71 ENSMUST00000196690 ENSMUSP00000143217 TRANSLATION IG_V_gene stop - - 119.0 8.0 1.0 1.0 58.4 0.0 3,-2 0.8525 - -2.0 PRINCIPAL:5 ENSMUSG00000096577 Ighv1-71 ENSMUST00000166645 ENSMUSP00000128289 TRANSLATION IG_V_gene start/stop - - 100.0 8.0 1.0 0.0 58.4 0.0 -4,-5 0.0599 - -2.0 ALTERNATIVE:2 ENSMUSG00000041781 Cpsf2 ENSMUST00000047357 ENSMUSP00000047797 TRANSLATION protein_coding - CCDS26116.1 1 782.0 3.0 7.8 30.9 305.2 0.0 -4,-7 1.0 20 19.0 PRINCIPAL:1 ENSMUSG00000113201 Eif1ad13 ENSMUST00000221442 ENSMUSP00000152437 TRANSLATION protein_coding - - - 144.0 0.0 1.0 3.7 68.9 0.0 -4,-5 0.8152 - 13.0 PRINCIPAL:1 ENSMUSG00000094268 Ighd5-8 ENSMUST00000178909 ENSMUSP00000141376 TRANSLATION IG_D_gene start/stop - - 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000066363 Serpina3f ENSMUST00000101080 ENSMUSP00000098641 TRANSLATION protein_coding - CCDS26149.1 1 445.0 0.0 3.6 0.0 393.3 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000066363 Serpina3f ENSMUST00000167049 ENSMUSP00000126520 TRANSLATION protein_coding - CCDS26149.1 1 445.0 0.0 3.6 0.0 393.3 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000066363 Serpina3f ENSMUST00000121337 ENSMUSP00000113945 TRANSLATION protein_coding - CCDS26149.1 1 445.0 0.0 3.6 0.0 393.3 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000020572 Nampt ENSMUST00000220200 ENSMUSP00000152015 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000020572 Nampt ENSMUST00000218491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020572 Nampt ENSMUST00000020886 ENSMUSP00000020886 TRANSLATION protein_coding - CCDS25871.1 1 491.0 18.0 11.25 15.6 247.2 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000021120 Pigh ENSMUST00000217998 ENSMUSP00000151930 TRANSLATION protein_coding - - 1 167.0 0.0 2.35 0.0 74.5 2.0 -4,-6 0.0071 1 10.002 MINOR ENSMUSG00000021120 Pigh ENSMUST00000217979 - NO_TRANSLATION retained_intron ENSMUSG00000021120 Pigh ENSMUST00000072154 ENSMUSP00000072018 TRANSLATION protein_coding - CCDS26006.1 1 188.0 0.0 3.35 14.4 74.5 2.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021140 Pcnx ENSMUST00000222468 ENSMUSP00000152168 TRANSLATION nonsense_mediated_decay start - 3 75.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021140 Pcnx ENSMUST00000221721 ENSMUSP00000152104 TRANSLATION protein_coding - - 5 2338.0 0.0 0.0 6.3 389.9 6.0 -4,-5 0.8439 17 4.0 ALTERNATIVE:1 ENSMUSG00000021140 Pcnx ENSMUST00000221675 ENSMUSP00000152385 TRANSLATION protein_coding start - 1 1473.0 0.0 0.0 0.0 389.9 4.0 -4,-5 0.2133 8 -2.0 MINOR ENSMUSG00000021140 Pcnx ENSMUST00000222908 - NO_TRANSLATION retained_intron ENSMUSG00000021140 Pcnx ENSMUST00000021567 ENSMUSP00000021567 TRANSLATION protein_coding - CCDS26025.1 2 2344.0 0.0 0.0 6.3 389.9 6.0 -4,-5 1.0 17 4.0 PRINCIPAL:4 ENSMUSG00000021140 Pcnx ENSMUST00000222828 - NO_TRANSLATION retained_intron ENSMUSG00000021140 Pcnx ENSMUST00000221472 - NO_TRANSLATION retained_intron ENSMUSG00000021140 Pcnx ENSMUST00000222005 ENSMUSP00000152302 TRANSLATION nonsense_mediated_decay - - 5 818.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0083 9 -2.0 MINOR ENSMUSG00000085925 Rtl1 ENSMUST00000149046 ENSMUSP00000115957 TRANSLATION protein_coding - CCDS26170.1 1 1744.0 0.0 0.0 0.0 42.3 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000020962 Gtf2a1 ENSMUST00000163693 - NO_TRANSLATION retained_intron ENSMUSG00000020962 Gtf2a1 ENSMUST00000063314 ENSMUSP00000068562 TRANSLATION protein_coding - CCDS49136.1 1 339.0 0.0 2.5 9.3 177.4 0.0 -4,-5 0.4707 1 6.336 MINOR ENSMUSG00000020962 Gtf2a1 ENSMUST00000021345 ENSMUSP00000021345 TRANSLATION protein_coding - CCDS26089.1 1 378.0 0.0 3.58 14.3 307.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000020656 Grhl1 ENSMUST00000085553 ENSMUSP00000082689 TRANSLATION protein_coding - CCDS49038.1 1 618.0 0.0 3.83 10.4 266.5 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000020656 Grhl1 ENSMUST00000223442 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020656 Grhl1 ENSMUST00000020985 ENSMUSP00000020985 TRANSLATION protein_coding - CCDS36420.1 1 536.0 0.0 3.83 0.0 266.5 0.0 -4,-5 0.1865 9 12.0 MINOR ENSMUSG00000020656 Grhl1 ENSMUST00000221426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021134 Srsf5 ENSMUST00000094693 ENSMUSP00000131323 TRANSLATION protein_coding - CCDS36484.1 1 269.0 0.0 4.5 2.7 104.3 0.0 -4,-7 1.0 6 9.0 PRINCIPAL:4 ENSMUSG00000021134 Srsf5 ENSMUST00000151968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021134 Srsf5 ENSMUST00000110356 ENSMUSP00000105985 TRANSLATION protein_coding - CCDS36484.1 5 269.0 0.0 4.5 2.7 104.3 0.0 -4,-7 1.0 6 9.0 PRINCIPAL:4 ENSMUSG00000021134 Srsf5 ENSMUST00000153056 - NO_TRANSLATION retained_intron ENSMUSG00000021134 Srsf5 ENSMUST00000110354 ENSMUSP00000105983 TRANSLATION protein_coding - CCDS83974.1 5 270.0 0.0 4.5 2.7 104.3 0.0 -4,-7 0.9357 6 9.0 ALTERNATIVE:2 ENSMUSG00000021134 Srsf5 ENSMUST00000152662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021134 Srsf5 ENSMUST00000138434 ENSMUSP00000138632 TRANSLATION nonsense_mediated_decay - - 3 46.0 0.0 1.0 0.0 34.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021134 Srsf5 ENSMUST00000125814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021134 Srsf5 ENSMUST00000110351 ENSMUSP00000105980 TRANSLATION protein_coding - CCDS83974.1 1 270.0 0.0 4.5 2.7 104.3 0.0 -4,-7 0.9357 6 9.0 ALTERNATIVE:2 ENSMUSG00000021134 Srsf5 ENSMUST00000110352 ENSMUSP00000105981 TRANSLATION protein_coding - CCDS36484.1 1 269.0 0.0 4.5 2.7 104.3 0.0 -4,-7 1.0 6 9.0 PRINCIPAL:4 ENSMUSG00000021134 Srsf5 ENSMUST00000151036 - NO_TRANSLATION retained_intron ENSMUSG00000021134 Srsf5 ENSMUST00000133783 - NO_TRANSLATION retained_intron ENSMUSG00000041716 Gm20604 ENSMUST00000174651 ENSMUSP00000133604 TRANSLATION protein_coding,RT - CCDS49147.1 2 75.0 0.0 1.0 0.1 83.7 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000073158 9030624G23Rik ENSMUST00000101538 ENSMUSP00000099077 TRANSLATION protein_coding - CCDS56833.1 1 155.0 2.0 2.75 0.0 73.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095554 Ighv1-16 ENSMUST00000103501 ENSMUSP00000100282 TRANSLATION IG_V_gene start/stop - - 98.0 3.0 1.0 0.0 34.6 0.0 -4,-6 0.7637 - -2.0 PRINCIPAL:1 ENSMUSG00000020592 Sdc1 ENSMUST00000160348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020592 Sdc1 ENSMUST00000161883 ENSMUSP00000123896 TRANSLATION protein_coding stop - 3 206.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000020592 Sdc1 ENSMUST00000020911 ENSMUSP00000020911 TRANSLATION protein_coding - CCDS25803.1 1 311.0 0.0 1.0 6.6 92.6 0.0 3,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000020592 Sdc1 ENSMUST00000159821 - NO_TRANSLATION retained_intron ENSMUSG00000006360 Crip1 ENSMUST00000198909 - NO_TRANSLATION retained_intron ENSMUSG00000006360 Crip1 ENSMUST00000200553 ENSMUSP00000143680 TRANSLATION protein_coding - CCDS26205.1 2 77.0 9.0 2.75 32.9 57.2 0.0 -4,-5 1.0 2 21.724 PRINCIPAL:1 ENSMUSG00000006360 Crip1 ENSMUST00000199089 ENSMUSP00000142803 TRANSLATION protein_coding - - 3 128.0 9.0 2.882 0.0 57.2 0.0 -4,-5 0.0176 2 18.0 MINOR ENSMUSG00000006360 Crip1 ENSMUST00000196932 - NO_TRANSLATION retained_intron ENSMUSG00000006360 Crip1 ENSMUST00000198597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006360 Crip1 ENSMUST00000006523 ENSMUSP00000006523 TRANSLATION protein_coding - CCDS26205.1 1 77.0 9.0 2.75 32.9 57.2 0.0 -4,-5 1.0 2 21.724 PRINCIPAL:1 ENSMUSG00000096396 Ighd5-2 ENSMUST00000179166 ENSMUSP00000142199 TRANSLATION IG_D_gene start/stop - - 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000087075 Lbhd2 ENSMUST00000150384 ENSMUSP00000128648 TRANSLATION protein_coding - CCDS49180.1 1 114.0 0.0 0.0 0.1 41.6 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000094951 Ighv5-6 ENSMUST00000103446 ENSMUSP00000100227 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.25 0.0 53.6 0.0 4,-1 0.8245 - -2.0 PRINCIPAL:1 ENSMUSG00000090121 Abhd12b ENSMUST00000162570 - NO_TRANSLATION retained_intron ENSMUSG00000090121 Abhd12b ENSMUST00000182927 ENSMUSP00000138681 TRANSLATION protein_coding - - 5 282.0 10.0 6.844 2.0 54.3 0.0 -4,-5 0.3459 - 16.225 MINOR ENSMUSG00000090121 Abhd12b ENSMUST00000182782 ENSMUSP00000138423 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090121 Abhd12b ENSMUST00000182512 ENSMUSP00000138185 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090121 Abhd12b ENSMUST00000161541 - NO_TRANSLATION retained_intron ENSMUSG00000090121 Abhd12b ENSMUST00000169156 ENSMUSP00000134568 TRANSLATION protein_coding - CCDS56843.1 5 359.0 10.0 7.924 3.6 52.8 0.0 -4,-5 1.0 - 18.832 PRINCIPAL:1 ENSMUSG00000036095 Dgkb ENSMUST00000222337 ENSMUSP00000152460 TRANSLATION protein_coding stop - 5 23.0 0.0 0.0 0.0 23.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036095 Dgkb ENSMUST00000221540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036095 Dgkb ENSMUST00000220990 ENSMUSP00000152378 TRANSLATION protein_coding - CCDS25889.1 1 795.0 9.0 5.005 13.1 562.7 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000036095 Dgkb ENSMUST00000221686 - NO_TRANSLATION retained_intron ENSMUSG00000036095 Dgkb ENSMUST00000221176 ENSMUSP00000152446 TRANSLATION protein_coding - - 1 282.0 9.0 4.894 0.0 203.2 0.0 -4,-5 0.0145 6 11.778 MINOR ENSMUSG00000036095 Dgkb ENSMUST00000040500 ENSMUSP00000037900 TRANSLATION protein_coding - CCDS25889.1 1 795.0 9.0 5.005 13.1 562.7 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000036095 Dgkb ENSMUST00000221098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036095 Dgkb ENSMUST00000220606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095761 Ighv1-20 ENSMUST00000194968 ENSMUSP00000141859 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.1 1.0 47.1 0.0 3,-2 0.8294 - -2.0 PRINCIPAL:1 ENSMUSG00000094502 Ighv1-69 ENSMUST00000199933 ENSMUSP00000143287 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 57.7 0.0 3,-2 0.8326 - -2.0 PRINCIPAL:1 ENSMUSG00000021200 Asb2 ENSMUST00000021617 ENSMUSP00000021617 TRANSLATION protein_coding - CCDS26128.1 1 634.0 0.0 3.12 9.2 193.9 0.0 -4,-6 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000021200 Asb2 ENSMUST00000149431 ENSMUSP00000117595 TRANSLATION protein_coding - - 1 586.0 0.0 3.12 2.3 193.9 0.0 -4,-2 0.3306 12 12.477 MINOR ENSMUSG00000021200 Asb2 ENSMUST00000127447 - NO_TRANSLATION retained_intron ENSMUSG00000021200 Asb2 ENSMUST00000135694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025323 Sp4 ENSMUST00000222314 ENSMUSP00000152603 TRANSLATION protein_coding - CCDS36579.1 1 782.0 12.0 1.8 11.0 61.9 0.0 -4,-5 1.0 4 17.0 PRINCIPAL:4 ENSMUSG00000025323 Sp4 ENSMUST00000026367 ENSMUSP00000026367 TRANSLATION protein_coding - - 1 780.0 12.0 1.8 11.0 62.4 0.0 -4,-5 0.8559 4 17.0 ALTERNATIVE:1 ENSMUSG00000025323 Sp4 ENSMUST00000221844 ENSMUSP00000152330 TRANSLATION protein_coding stop - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000020651 Slc26a4 ENSMUST00000001253 ENSMUSP00000001253 TRANSLATION protein_coding - CCDS36429.1 1 780.0 0.0 9.57 12.0 482.5 0.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000020651 Slc26a4 ENSMUST00000218992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020950 Foxg1 ENSMUST00000135006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020950 Foxg1 ENSMUST00000179669 ENSMUSP00000136372 TRANSLATION protein_coding - CCDS25899.1 - 481.0 0.0 0.4 2.5 135.0 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000020950 Foxg1 ENSMUST00000154930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020950 Foxg1 ENSMUST00000021333 ENSMUSP00000021333 TRANSLATION protein_coding - CCDS25899.1 1 481.0 0.0 0.4 2.5 135.0 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000021235 Coq6 ENSMUST00000150391 - NO_TRANSLATION retained_intron ENSMUSG00000021235 Coq6 ENSMUST00000140961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021235 Coq6 ENSMUST00000110278 ENSMUSP00000105907 TRANSLATION protein_coding - - 5 432.0 33.0 4.67 0.0 0.0 0.0 0,1 0.0807 7 11.202 MINOR ENSMUSG00000021235 Coq6 ENSMUST00000153450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021235 Coq6 ENSMUST00000021661 ENSMUSP00000021661 TRANSLATION protein_coding - CCDS26044.1 1 476.0 33.0 5.07 2.2 0.0 0.0 0,1 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000021235 Coq6 ENSMUST00000110276 ENSMUSP00000105905 TRANSLATION protein_coding - CCDS26044.1 5 476.0 33.0 5.07 2.2 0.0 0.0 0,1 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000021235 Coq6 ENSMUST00000126913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021235 Coq6 ENSMUST00000124257 - NO_TRANSLATION retained_intron ENSMUSG00000021235 Coq6 ENSMUST00000152913 ENSMUSP00000115676 TRANSLATION nonsense_mediated_decay - - 1 282.0 23.0 2.67 0.0 0.0 0.0 0,1 0.0683 7 -2.0 MINOR ENSMUSG00000021235 Coq6 ENSMUST00000156592 - NO_TRANSLATION retained_intron ENSMUSG00000021235 Coq6 ENSMUST00000145522 ENSMUSP00000117609 TRANSLATION protein_coding start - 2 200.0 18.0 1.29 0.0 0.0 0.0 -2,0 0.0286 4 -2.0 MINOR ENSMUSG00000020955 Ap4s1 ENSMUST00000021338 ENSMUSP00000021338 TRANSLATION protein_coding - CCDS36441.1 1 144.0 0.0 3.5 36.0 149.0 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020955 Ap4s1 ENSMUST00000218820 ENSMUSP00000151472 TRANSLATION protein_coding stop - 5 134.0 0.0 2.65 0.0 107.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000076655 Ighv4-1 ENSMUST00000103464 ENSMUSP00000100245 TRANSLATION IG_V_gene stop - - 116.0 3.0 1.0 0.0 41.0 0.0 3,-1 0.8324 3 -2.0 PRINCIPAL:1 ENSMUSG00000113805 Eif1ad12 ENSMUST00000220499 ENSMUSP00000152828 TRANSLATION protein_coding - - - 144.0 0.0 1.0 3.7 68.9 0.0 -4,-5 0.8152 - 13.0 PRINCIPAL:1 ENSMUSG00000020639 Pfn4 ENSMUST00000020967 ENSMUSP00000020967 TRANSLATION protein_coding - CCDS25790.1 1 129.0 0.0 3.66 16.8 111.0 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020639 Pfn4 ENSMUST00000219503 ENSMUSP00000151411 TRANSLATION protein_coding - - 1 126.0 0.0 3.33 0.0 99.4 0.0 -4,-6 0.062 - 10.644 MINOR ENSMUSG00000020639 Pfn4 ENSMUST00000178879 ENSMUSP00000136765 TRANSLATION protein_coding - CCDS25790.1 1 129.0 0.0 3.66 16.8 111.0 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020639 Pfn4 ENSMUST00000219438 ENSMUSP00000151865 TRANSLATION protein_coding stop - 3 76.0 0.0 2.0 0.0 47.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000076666 Ighv14-4 ENSMUST00000195706 ENSMUSP00000141226 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.0 0.0 51.4 0.0 3,-2 0.8256 - -2.0 PRINCIPAL:5 ENSMUSG00000076666 Ighv14-4 ENSMUST00000103475 ENSMUSP00000100256 TRANSLATION IG_V_gene stop - - 111.0 6.0 1.0 0.0 50.0 0.0 -4,-5 0.0965 - -2.0 ALTERNATIVE:2 ENSMUSG00000034574 Daam1 ENSMUST00000085299 ENSMUSP00000082406 TRANSLATION protein_coding - CCDS25964.1 1 1077.0 0.0 13.083 7.2 775.3 0.0 -4,-1 1.0 23 9.302 PRINCIPAL:3 ENSMUSG00000034574 Daam1 ENSMUST00000222327 - NO_TRANSLATION retained_intron ENSMUSG00000034574 Daam1 ENSMUST00000221971 - NO_TRANSLATION retained_intron ENSMUSG00000034574 Daam1 ENSMUST00000221317 ENSMUSP00000152532 TRANSLATION protein_coding - - 1 1068.0 0.0 12.885 7.3 784.2 0.0 -4,-1 0.9757 22 9.604 ALTERNATIVE:1 ENSMUSG00000034574 Daam1 ENSMUST00000223272 ENSMUSP00000152564 TRANSLATION protein_coding - CCDS25964.1 1 1077.0 0.0 13.083 7.2 775.3 0.0 -4,-1 1.0 23 9.302 PRINCIPAL:3 ENSMUSG00000020581 Agr2 ENSMUST00000020898 ENSMUSP00000020898 TRANSLATION protein_coding - CCDS25881.1 1 175.0 7.0 4.2 21.0 84.1 0.0 4,-1 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000020581 Agr2 ENSMUST00000147861 - NO_TRANSLATION retained_intron ENSMUSG00000021079 Timm9 ENSMUST00000220482 ENSMUSP00000152114 TRANSLATION protein_coding - CCDS25962.1 3 89.0 0.0 2.75 36.9 57.9 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021079 Timm9 ENSMUST00000221367 ENSMUSP00000152574 TRANSLATION protein_coding - CCDS25962.1 5 89.0 0.0 2.75 36.9 57.9 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021079 Timm9 ENSMUST00000221178 ENSMUSP00000152544 TRANSLATION protein_coding - - 3 46.0 0.0 1.5 0.0 30.0 0.0 -4,-5 0.0 2 6.378 MINOR ENSMUSG00000021079 Timm9 ENSMUST00000221892 ENSMUSP00000152204 TRANSLATION protein_coding - - 5 61.0 0.0 2.0 2.8 30.4 0.0 -4,-5 0.0258 3 7.712 MINOR ENSMUSG00000021079 Timm9 ENSMUST00000021486 ENSMUSP00000021486 TRANSLATION protein_coding - CCDS25962.1 1 89.0 0.0 2.75 36.9 57.9 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021079 Timm9 ENSMUST00000220841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021079 Timm9 ENSMUST00000221559 ENSMUSP00000152455 TRANSLATION protein_coding - CCDS25962.1 1 89.0 0.0 2.75 36.9 57.9 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021079 Timm9 ENSMUST00000221797 ENSMUSP00000152255 TRANSLATION protein_coding - - 1 46.0 0.0 1.5 0.0 30.0 0.0 -4,-5 0.0 2 6.378 MINOR ENSMUSG00000021079 Timm9 ENSMUST00000166120 ENSMUSP00000126298 TRANSLATION protein_coding - CCDS25962.1 1 89.0 0.0 2.75 36.9 57.9 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021079 Timm9 ENSMUST00000221815 ENSMUSP00000152577 TRANSLATION protein_coding - - 1 46.0 0.0 1.5 0.0 30.0 0.0 -4,-5 0.0 2 6.378 MINOR ENSMUSG00000021079 Timm9 ENSMUST00000223544 - NO_TRANSLATION retained_intron ENSMUSG00000021010 Npas3 ENSMUST00000223057 ENSMUSP00000152452 TRANSLATION protein_coding - - 5 907.0 0.0 4.15 0.1 107.5 0.0 -4,-2 0.3106 2 7.25 ALTERNATIVE:2 ENSMUSG00000021010 Npas3 ENSMUST00000223358 ENSMUSP00000152411 TRANSLATION protein_coding - - 1 923.0 0.0 4.525 0.1 107.5 0.0 -4,-6 0.7837 3 8.0 ALTERNATIVE:2 ENSMUSG00000021010 Npas3 ENSMUST00000220986 ENSMUSP00000152696 TRANSLATION protein_coding stop - 1 64.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021010 Npas3 ENSMUST00000101432 ENSMUSP00000098975 TRANSLATION protein_coding - CCDS25907.1 1 925.0 0.0 4.525 0.0 107.5 0.0 -4,-7 1.0 3 8.0 PRINCIPAL:4 ENSMUSG00000066392 Nrxn3 ENSMUST00000110130 ENSMUSP00000105757 TRANSLATION protein_coding - CCDS79143.1 2 567.0 4.0 3.4 1.1 112.6 3.0 -2,-6 0.075 11 0.694 MINOR ENSMUSG00000066392 Nrxn3 ENSMUST00000057634 ENSMUSP00000050075 TRANSLATION protein_coding - CCDS49134.1 1 1100.0 12.0 12.202 0.0 395.3 3.0 -4,-5 0.0423 29 7.518 MINOR ENSMUSG00000066392 Nrxn3 ENSMUST00000190030 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066392 Nrxn3 ENSMUST00000164072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066392 Nrxn3 ENSMUST00000167103 ENSMUSP00000127407 TRANSLATION protein_coding - - 5 1391.0 12.0 14.31 4.1 542.9 0.0 2,-3 0.2689 27 17.23 MINOR ENSMUSG00000066392 Nrxn3 ENSMUST00000167734 - NO_TRANSLATION retained_intron ENSMUSG00000066392 Nrxn3 ENSMUST00000190626 ENSMUSP00000139879 TRANSLATION protein_coding - - 1 1009.0 12.0 11.802 0.0 366.4 0.0 -4,-5 0.0057 26 6.72 MINOR ENSMUSG00000066392 Nrxn3 ENSMUST00000167887 ENSMUSP00000127926 TRANSLATION protein_coding - CCDS49134.1 5 1100.0 12.0 12.202 0.0 395.3 3.0 -4,-5 0.0423 29 7.518 MINOR ENSMUSG00000066392 Nrxn3 ENSMUST00000110138 - NO_TRANSLATION retained_intron ENSMUSG00000066392 Nrxn3 ENSMUST00000163944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066392 Nrxn3 ENSMUST00000163134 ENSMUSP00000129678 TRANSLATION protein_coding - CCDS56856.1 5 1571.0 12.0 14.442 14.7 566.4 3.0 2,-3 1.0 31 22.0 PRINCIPAL:1 ENSMUSG00000066392 Nrxn3 ENSMUST00000238943 ENSMUSP00000159078 TRANSLATION protein_coding - - - 635.0 4.0 3.0 12.0 115.6 3.0 -2,-6 0.5401 10 3.878 MINOR ENSMUSG00000066392 Nrxn3 ENSMUST00000110133 ENSMUSP00000105760 TRANSLATION protein_coding - - 5 430.0 4.0 3.0 13.1 115.6 3.0 -2,-6 0.5533 9 4.198 MINOR ENSMUSG00000066392 Nrxn3 ENSMUST00000170533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118667 Ahnak2 ENSMUST00000239525 ENSMUSP00000159404 TRANSLATION protein_coding - - - 3501.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.8542 41 6.0 PRINCIPAL:1 ENSMUSG00000066361 Serpina3c ENSMUST00000085050 ENSMUSP00000082125 TRANSLATION protein_coding - CCDS26148.1 1 417.0 0.0 4.0 1.3 393.6 0.0 3,-1 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000095130 Ighv1-39 ENSMUST00000103515 ENSMUSP00000100296 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 1.0 55.2 0.0 3,-2 0.8345 2 -2.0 PRINCIPAL:1 ENSMUSG00000076674 Ighv3-8 ENSMUST00000103483 ENSMUSP00000100264 TRANSLATION IG_V_gene stop - - 131.0 7.0 1.0 0.0 46.6 0.0 3,-2 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000090395 Gm54608 ENSMUST00000166255 ENSMUSP00000128354 TRANSLATION IG_LV_gene start/stop - - 92.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - -2.0 PRINCIPAL:1 ENSMUSG00000076646 Ighv2-6-8 ENSMUST00000192911 ENSMUSP00000141760 TRANSLATION IG_V_gene stop - - 116.0 6.0 1.0 0.0 50.8 0.0 3,-2 0.8059 - -2.0 PRINCIPAL:5 ENSMUSG00000076646 Ighv2-6-8 ENSMUST00000103455 ENSMUSP00000100236 TRANSLATION IG_V_gene stop - - 114.0 6.0 1.0 0.0 50.8 0.0 4,-1 0.312 - -2.0 ALTERNATIVE:2 ENSMUSG00000021271 Zfp839 ENSMUST00000221549 ENSMUSP00000152270 TRANSLATION protein_coding stop - 3 145.0 0.0 0.0 0.0 76.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021271 Zfp839 ENSMUST00000222460 ENSMUSP00000152386 TRANSLATION protein_coding stop - 1 791.0 3.0 0.0 0.0 558.7 0.0 -4,-5 0.0184 - -2.0 MINOR ENSMUSG00000021271 Zfp839 ENSMUST00000170060 ENSMUSP00000131841 TRANSLATION protein_coding - CCDS49177.1 1 921.0 3.0 0.0 0.0 1073.4 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000096619 Eif1ad14 ENSMUST00000180053 ENSMUSP00000137146 TRANSLATION protein_coding - - - 144.0 0.0 1.0 3.7 66.0 0.0 -4,-5 0.8152 - 13.0 PRINCIPAL:1 ENSMUSG00000021171 Esyt2 ENSMUST00000220720 ENSMUSP00000152786 TRANSLATION nonsense_mediated_decay - - 1 326.0 0.0 5.5 0.0 407.5 2.0 -4,-7 0.0006 6 -2.0 MINOR ENSMUSG00000021171 Esyt2 ENSMUST00000221584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021171 Esyt2 ENSMUST00000220816 ENSMUSP00000152444 TRANSLATION protein_coding - CCDS26211.1 1 845.0 5.0 16.48 1.4 586.4 2.0 -4,-7 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000021171 Esyt2 ENSMUST00000220754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021171 Esyt2 ENSMUST00000220804 ENSMUSP00000152311 TRANSLATION nonsense_mediated_decay start - 1 89.0 0.0 2.0 0.0 104.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021171 Esyt2 ENSMUST00000223150 - NO_TRANSLATION retained_intron ENSMUSG00000021171 Esyt2 ENSMUST00000223181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021171 Esyt2 ENSMUST00000100986 ENSMUSP00000098548 TRANSLATION protein_coding - CCDS26211.1 1 845.0 5.0 16.48 1.4 586.4 2.0 -4,-7 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000095127 Ighv1-82 ENSMUST00000196991 ENSMUSP00000142912 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 58.6 0.0 2,-2 0.855 3 -2.0 PRINCIPAL:5 ENSMUSG00000095127 Ighv1-82 ENSMUST00000103549 ENSMUSP00000100330 TRANSLATION IG_V_gene start/stop - - 98.0 8.0 1.0 0.0 58.6 0.0 -4,-6 0.0583 3 -2.0 ALTERNATIVE:2 ENSMUSG00000021228 Acot3 ENSMUST00000021653 ENSMUSP00000021653 TRANSLATION protein_coding - CCDS26036.1 1 432.0 3.0 5.066 0.4 439.8 0.0 -4,-6 0.2989 4 15.0 MINOR ENSMUSG00000021228 Acot3 ENSMUST00000223080 ENSMUSP00000152164 TRANSLATION protein_coding - - 1 282.0 0.0 2.066 0.0 150.3 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000021228 Acot3 ENSMUST00000120927 ENSMUSP00000112678 TRANSLATION protein_coding - CCDS83985.1 1 421.0 3.0 5.0 11.4 439.8 0.0 -4,-5 1.0 4 17.868 PRINCIPAL:1 ENSMUSG00000021116 Eif2s1 ENSMUST00000219754 - NO_TRANSLATION retained_intron ENSMUSG00000021116 Eif2s1 ENSMUST00000071230 ENSMUSP00000071214 TRANSLATION protein_coding - CCDS26003.1 1 315.0 0.0 6.75 34.2 182.3 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000021116 Eif2s1 ENSMUST00000220382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059669 Taf1b ENSMUST00000075954 ENSMUSP00000075339 TRANSLATION protein_coding - CCDS36419.1 1 586.0 4.0 0.0 5.5 39.5 0.0 -4,-5 1.0 2 11.352 PRINCIPAL:1 ENSMUSG00000059669 Taf1b ENSMUST00000223503 - NO_TRANSLATION retained_intron ENSMUSG00000059669 Taf1b ENSMUST00000222710 ENSMUSP00000152862 TRANSLATION protein_coding - - 1 69.0 4.0 0.0 0.0 44.3 0.0 -4,-5 0.0274 - 10.0 MINOR ENSMUSG00000059669 Taf1b ENSMUST00000221372 ENSMUSP00000152701 TRANSLATION nonsense_mediated_decay - - 1 69.0 4.0 0.0 0.0 44.3 0.0 -4,-5 0.0274 - -2.0 MINOR ENSMUSG00000095429 Ighv5-12 ENSMUST00000103450 ENSMUSP00000100231 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.0 0.0 57.1 0.0 4,-1 0.8269 1 -2.0 PRINCIPAL:1 ENSMUSG00000076688 Ighv15-2 ENSMUST00000195337 ENSMUSP00000141867 TRANSLATION IG_V_gene stop - - 118.0 0.0 1.0 1.0 39.9 0.0 0,-3 0.7918 - -2.0 PRINCIPAL:1 ENSMUSG00000020629 Adi1 ENSMUST00000138081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020629 Adi1 ENSMUST00000135772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020629 Adi1 ENSMUST00000020957 ENSMUSP00000020957 TRANSLATION protein_coding - CCDS25853.1 1 179.0 4.0 4.0 30.4 205.4 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000035597 Prpf39 ENSMUST00000223105 - NO_TRANSLATION retained_intron ENSMUSG00000035597 Prpf39 ENSMUST00000220798 - NO_TRANSLATION retained_intron ENSMUSG00000035597 Prpf39 ENSMUST00000223341 ENSMUSP00000152756 TRANSLATION nonsense_mediated_decay start - 5 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0146 - -2.0 MINOR ENSMUSG00000035597 Prpf39 ENSMUST00000120580 ENSMUSP00000112953 TRANSLATION protein_coding - CCDS25939.2 2 665.0 0.0 10.01 12.5 0.0 0.0 -4,-5 1.0 9 9.0 PRINCIPAL:1 ENSMUSG00000035597 Prpf39 ENSMUST00000222154 - NO_TRANSLATION retained_intron ENSMUSG00000035597 Prpf39 ENSMUST00000221221 - NO_TRANSLATION retained_intron ENSMUSG00000035597 Prpf39 ENSMUST00000129956 ENSMUSP00000114713 TRANSLATION nonsense_mediated_decay - - 1 150.0 0.0 2.1 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000035597 Prpf39 ENSMUST00000220729 - NO_TRANSLATION retained_intron ENSMUSG00000035597 Prpf39 ENSMUST00000220462 - NO_TRANSLATION retained_intron ENSMUSG00000035597 Prpf39 ENSMUST00000223315 ENSMUSP00000152508 TRANSLATION protein_coding stop - 3 208.0 0.0 2.83 0.0 0.0 0.0 -4,-5 0.0041 4 -2.0 MINOR ENSMUSG00000021062 Rab15 ENSMUST00000143863 - NO_TRANSLATION retained_intron ENSMUSG00000021062 Rab15 ENSMUST00000154765 ENSMUSP00000122067 TRANSLATION protein_coding stop - 3 138.0 11.0 4.5 0.0 148.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021062 Rab15 ENSMUST00000141622 ENSMUSP00000115720 TRANSLATION protein_coding stop - 3 114.0 11.0 3.75 0.0 140.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021062 Rab15 ENSMUST00000122419 ENSMUSP00000112457 TRANSLATION protein_coding - - 5 183.0 11.0 5.55 0.0 153.0 0.0 -4,-6 0.0002 2 7.254 MINOR ENSMUSG00000021062 Rab15 ENSMUST00000121716 ENSMUSP00000113299 TRANSLATION protein_coding - CCDS83970.1 3 166.0 11.0 5.25 9.3 148.0 0.0 -4,-5 0.1413 2 7.418 MINOR ENSMUSG00000021062 Rab15 ENSMUST00000021459 ENSMUSP00000021459 TRANSLATION protein_coding - CCDS25997.1 1 212.0 21.0 6.25 32.2 208.8 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000021062 Rab15 ENSMUST00000118604 ENSMUSP00000112789 TRANSLATION protein_coding - CCDS83970.1 3 166.0 11.0 5.25 9.3 148.0 0.0 -4,-5 0.1413 2 7.418 MINOR ENSMUSG00000021062 Rab15 ENSMUST00000134124 - NO_TRANSLATION retained_intron ENSMUSG00000095717 Eif1ad11 ENSMUST00000178852 ENSMUSP00000137563 TRANSLATION protein_coding - - - 144.0 0.0 1.0 3.7 65.6 0.0 -4,-5 0.8152 1 13.0 PRINCIPAL:1 ENSMUSG00000079031 Eif1ad2 ENSMUST00000110149 ENSMUSP00000105776 TRANSLATION protein_coding - CCDS49126.1 1 144.0 0.0 1.0 3.7 68.3 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000098134 Rnf113a2 ENSMUST00000183146 ENSMUSP00000138536 TRANSLATION protein_coding - CCDS59575.1 - 337.0 12.0 0.5 1.8 66.7 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000020669 Sh3yl1 ENSMUST00000110880 ENSMUSP00000106504 TRANSLATION protein_coding - CCDS79110.1 1 302.0 0.0 1.25 0.0 193.6 0.0 -4,-6 0.2218 2 12.0 MINOR ENSMUSG00000020669 Sh3yl1 ENSMUST00000142693 - NO_TRANSLATION retained_intron ENSMUSG00000020669 Sh3yl1 ENSMUST00000020997 ENSMUSP00000020997 TRANSLATION protein_coding - CCDS25859.1 1 340.0 0.0 1.25 16.8 193.6 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000020669 Sh3yl1 ENSMUST00000128814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056508 1700001K19Rik ENSMUST00000222915 ENSMUSP00000152785 TRANSLATION protein_coding stop - 3 84.0 0.0 0.5 0.0 0.0 0.0 -4,0 0.0899 - -2.0 MINOR ENSMUSG00000056508 1700001K19Rik ENSMUST00000070659 ENSMUSP00000068238 TRANSLATION protein_coding - CCDS49175.1 1 219.0 0.0 0.5 0.4 0.0 0.0 -4,0 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094694 Ighv1-9 ENSMUST00000193893 ENSMUSP00000141381 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 52.7 0.0 4,-1 0.8349 - -2.0 PRINCIPAL:1 ENSMUSG00000020577 Tspan13 ENSMUST00000020896 ENSMUSP00000020896 TRANSLATION protein_coding - CCDS25882.1 1 204.0 0.0 5.75 31.9 74.4 5.0 -2,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000020577 Tspan13 ENSMUST00000222584 ENSMUSP00000152258 TRANSLATION protein_coding stop - 2 133.0 0.0 3.25 0.0 56.1 3.0 -4,-7 0.0019 2 -2.0 MINOR ENSMUSG00000020577 Tspan13 ENSMUST00000220641 ENSMUSP00000152769 TRANSLATION nonsense_mediated_decay - - 3 65.0 0.0 0.75 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000020668 Kif3c ENSMUST00000218952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000020668 Kif3c ENSMUST00000220210 ENSMUSP00000151286 TRANSLATION protein_coding - CCDS25783.1 1 796.0 11.0 0.5 8.7 376.3 0.0 -4,-7 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000020668 Kif3c ENSMUST00000020999 ENSMUSP00000020999 TRANSLATION protein_coding - CCDS25783.1 1 796.0 11.0 0.5 8.7 376.3 0.0 -4,-7 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000020668 Kif3c ENSMUST00000219895 ENSMUSP00000151953 TRANSLATION protein_coding - - 1 278.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 4 0.0 MINOR ENSMUSG00000020668 Kif3c ENSMUST00000217891 - NO_TRANSLATION retained_intron ENSMUSG00000001270 Ckb ENSMUST00000222705 - NO_TRANSLATION retained_intron ENSMUSG00000001270 Ckb ENSMUST00000222513 - NO_TRANSLATION retained_intron ENSMUSG00000001270 Ckb ENSMUST00000220888 - NO_TRANSLATION retained_intron ENSMUSG00000001270 Ckb ENSMUST00000223099 - NO_TRANSLATION retained_intron ENSMUSG00000001270 Ckb ENSMUST00000001304 ENSMUSP00000001304 TRANSLATION protein_coding - CCDS26183.1 1 381.0 23.0 7.0 36.9 388.0 0.0 -4,-6 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000020994 Pnn ENSMUST00000021381 ENSMUSP00000021381 TRANSLATION protein_coding - CCDS25933.1 1 726.0 0.0 0.0 4.6 313.5 0.0 -4,-5 1.0 13 8.0 PRINCIPAL:1 ENSMUSG00000020994 Pnn ENSMUST00000217676 - NO_TRANSLATION retained_intron ENSMUSG00000020994 Pnn ENSMUST00000217773 - NO_TRANSLATION retained_intron ENSMUSG00000020994 Pnn ENSMUST00000219176 ENSMUSP00000151381 TRANSLATION nonsense_mediated_decay - - 5 59.0 0.0 0.0 0.0 90.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021241 Isca2 ENSMUST00000220726 - NO_TRANSLATION retained_intron ENSMUSG00000021241 Isca2 ENSMUST00000021667 ENSMUSP00000021667 TRANSLATION protein_coding - CCDS49111.1 1 154.0 4.0 2.45 11.0 0.0 0.0 -4,0 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000021241 Isca2 ENSMUST00000222818 - NO_TRANSLATION retained_intron ENSMUSG00000021241 Isca2 ENSMUST00000222982 ENSMUSP00000152679 TRANSLATION protein_coding start - 3 146.0 4.0 2.45 6.7 0.0 0.0 -4,0 0.6271 8 -2.0 MINOR ENSMUSG00000021241 Isca2 ENSMUST00000223089 - NO_TRANSLATION retained_intron ENSMUSG00000021241 Isca2 ENSMUST00000222166 - NO_TRANSLATION retained_intron ENSMUSG00000021241 Isca2 ENSMUST00000222449 ENSMUSP00000152379 TRANSLATION protein_coding - - 2 53.0 0.0 0.45 2.0 0.0 0.0 -4,0 0.1464 - 1.404 MINOR ENSMUSG00000021241 Isca2 ENSMUST00000222136 - NO_TRANSLATION retained_intron ENSMUSG00000021241 Isca2 ENSMUST00000222022 ENSMUSP00000152880 TRANSLATION protein_coding start - 2 52.0 0.0 0.45 0.0 0.0 0.0 -4,0 0.0116 - -2.0 MINOR ENSMUSG00000068940 Tcl1b3 ENSMUST00000090990 ENSMUSP00000088512 TRANSLATION protein_coding - CCDS36547.1 1 122.0 0.0 0.566 0.0 139.7 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047014 Catsperb ENSMUST00000221965 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047014 Catsperb ENSMUST00000221241 ENSMUSP00000152678 TRANSLATION nonsense_mediated_decay - - 1 430.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0053 2 -2.0 MINOR ENSMUSG00000047014 Catsperb ENSMUST00000055156 ENSMUSP00000052089 TRANSLATION protein_coding - CCDS26112.1 1 1109.0 0.0 0.0 0.3 845.9 0.0 2,-3 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000047014 Catsperb ENSMUST00000220474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047014 Catsperb ENSMUST00000220820 ENSMUSP00000152610 TRANSLATION nonsense_mediated_decay start - 1 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066364 Serpina3b ENSMUST00000085052 ENSMUSP00000082127 TRANSLATION protein_coding - CCDS26147.1 1 420.0 0.0 3.6 0.4 358.9 0.0 2,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000095571 Ighv5-17 ENSMUST00000103459 ENSMUSP00000100240 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 0.0 49.3 0.0 4,-1 0.8364 1 -2.0 PRINCIPAL:1 ENSMUSG00000079104 Prps1l3 ENSMUST00000139049 ENSMUSP00000133736 TRANSLATION protein_coding - CCDS56839.1 1 318.0 12.0 1.0 36.9 288.8 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000020627 Klhl29 ENSMUST00000218384 ENSMUSP00000151284 TRANSLATION protein_coding - - 1 814.0 0.0 5.4 0.7 300.3 0.0 -4,-7 0.1321 6 11.04 MINOR ENSMUSG00000020627 Klhl29 ENSMUST00000020958 ENSMUSP00000020958 TRANSLATION protein_coding - CCDS49021.1 1 875.0 0.0 5.88 9.9 300.3 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000096670 Ighv2-6 ENSMUST00000179657 ENSMUSP00000137454 TRANSLATION IG_V_gene stop - - 116.0 3.0 1.0 0.0 58.1 0.0 4,-1 0.8323 1 -2.0 PRINCIPAL:1 ENSMUSG00000048833 Slc39a9 ENSMUST00000218440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048833 Slc39a9 ENSMUST00000219706 ENSMUSP00000151451 TRANSLATION protein_coding - - 1 263.0 0.0 0.58 0.0 77.6 5.0 -2,-5 0.0059 - 8.928 MINOR ENSMUSG00000048833 Slc39a9 ENSMUST00000219689 ENSMUSP00000151869 TRANSLATION protein_coding start - 3 115.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000048833 Slc39a9 ENSMUST00000217889 ENSMUSP00000151396 TRANSLATION protein_coding - - 1 261.0 0.0 0.48 0.0 56.7 7.0 -2,-5 0.0022 - 6.924 MINOR ENSMUSG00000048833 Slc39a9 ENSMUST00000217679 - NO_TRANSLATION retained_intron ENSMUSG00000048833 Slc39a9 ENSMUST00000085245 ENSMUSP00000082343 TRANSLATION protein_coding - CCDS49099.1 1 308.0 0.0 0.83 24.8 98.4 9.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000048833 Slc39a9 ENSMUST00000219405 ENSMUSP00000151781 TRANSLATION protein_coding stop - 3 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048833 Slc39a9 ENSMUST00000217805 - NO_TRANSLATION retained_intron ENSMUSG00000007867 Ift43 ENSMUST00000223269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007867 Ift43 ENSMUST00000222905 ENSMUSP00000152281 TRANSLATION protein_coding stop - 3 143.0 0.0 1.25 0.0 125.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000007867 Ift43 ENSMUST00000222821 ENSMUSP00000152079 TRANSLATION protein_coding - - 1 206.0 0.0 2.25 4.7 168.9 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000007867 Ift43 ENSMUST00000221194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007867 Ift43 ENSMUST00000221161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007867 Ift43 ENSMUST00000220711 - NO_TRANSLATION retained_intron ENSMUSG00000007867 Ift43 ENSMUST00000054565 ENSMUSP00000061891 TRANSLATION protein_coding - CCDS26064.1 1 195.0 0.0 2.25 0.9 165.8 0.0 -4,-5 0.301 3 11.814 MINOR ENSMUSG00000021182 Ccdc88c ENSMUST00000223235 ENSMUSP00000152316 TRANSLATION protein_coding start/stop - 5 235.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000021182 Ccdc88c ENSMUST00000233416 ENSMUSP00000156712 TRANSLATION protein_coding start - - 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000021182 Ccdc88c ENSMUST00000222204 - NO_TRANSLATION retained_intron ENSMUSG00000021182 Ccdc88c ENSMUST00000223416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021182 Ccdc88c ENSMUST00000085096 ENSMUSP00000082177 TRANSLATION protein_coding - - 5 2016.0 0.0 1.975 0.0 130.7 0.0 -4,-6 0.3196 27 6.0 ALTERNATIVE:2 ENSMUSG00000021182 Ccdc88c ENSMUST00000223509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021182 Ccdc88c ENSMUST00000223097 ENSMUSP00000152163 TRANSLATION protein_coding - - 1 172.0 0.0 1.975 0.0 90.0 0.0 -4,-6 0.4274 2 6.0 MINOR ENSMUSG00000021182 Ccdc88c ENSMUST00000068411 ENSMUSP00000068629 TRANSLATION protein_coding - CCDS26110.1 1 2009.0 0.0 1.975 0.1 132.0 0.0 -4,-6 0.9293 27 6.0 PRINCIPAL:2 ENSMUSG00000095204 Ighv1-52 ENSMUST00000192554 ENSMUSP00000141930 TRANSLATION IG_V_gene stop - - 117.0 9.0 1.0 1.0 54.3 0.0 4,-1 0.8374 - -2.0 PRINCIPAL:1 ENSMUSG00000052632 Asap2 ENSMUST00000090834 ENSMUSP00000088344 TRANSLATION protein_coding - - 5 809.0 0.0 11.725 0.0 175.8 0.0 -4,-5 0.0042 15 1.0 MINOR ENSMUSG00000052632 Asap2 ENSMUST00000174530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052632 Asap2 ENSMUST00000064595 ENSMUSP00000063217 TRANSLATION protein_coding - CCDS49037.1 5 1000.0 4.0 15.025 2.4 329.6 0.0 -4,-5 0.6443 19 12.778 MINOR ENSMUSG00000052632 Asap2 ENSMUST00000050990 ENSMUSP00000054631 TRANSLATION protein_coding - CCDS49036.1 5 955.0 4.0 15.025 4.6 333.0 0.0 -4,-5 0.9293 18 14.0 ALTERNATIVE:1 ENSMUSG00000052632 Asap2 ENSMUST00000101562 ENSMUSP00000099098 TRANSLATION protein_coding - CCDS56832.1 1 958.0 4.0 15.025 4.6 333.0 0.0 -4,-5 1.0 18 14.0 PRINCIPAL:4 ENSMUSG00000021090 Lrrc9 ENSMUST00000161284 ENSMUSP00000124602 TRANSLATION protein_coding - CCDS36472.2 1 1155.0 2.0 9.044 0.1 57.4 0.0 -4,-5 0.0543 - 5.474 MINOR ENSMUSG00000021090 Lrrc9 ENSMUST00000162179 - NO_TRANSLATION retained_intron ENSMUSG00000021090 Lrrc9 ENSMUST00000160394 - NO_TRANSLATION retained_intron ENSMUSG00000021090 Lrrc9 ENSMUST00000161547 - NO_TRANSLATION retained_intron ENSMUSG00000021090 Lrrc9 ENSMUST00000162159 ENSMUSP00000124394 TRANSLATION protein_coding - CCDS49085.1 1 1456.0 2.0 12.189 0.0 99.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000021090 Lrrc9 ENSMUST00000221360 ENSMUSP00000152125 TRANSLATION nonsense_mediated_decay - - 5 1324.0 2.0 11.064 0.0 99.1 0.0 -4,-5 0.2139 - -2.0 MINOR ENSMUSG00000021090 Lrrc9 ENSMUST00000161195 - NO_TRANSLATION retained_intron ENSMUSG00000021090 Lrrc9 ENSMUST00000220791 ENSMUSP00000152689 TRANSLATION protein_coding start - 5 294.0 0.0 3.934 0.0 41.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021090 Lrrc9 ENSMUST00000221282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021090 Lrrc9 ENSMUST00000161957 - NO_TRANSLATION retained_intron ENSMUSG00000021115 Vrk1 ENSMUST00000021539 ENSMUSP00000021539 TRANSLATION protein_coding - CCDS36551.1 1 440.0 0.0 10.24 0.0 55.5 0.0 -4,-2 0.1733 11 12.0 MINOR ENSMUSG00000021115 Vrk1 ENSMUST00000072040 ENSMUSP00000071922 TRANSLATION protein_coding - CCDS26158.1 1 396.0 0.0 10.24 10.1 55.5 0.0 -4,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000021115 Vrk1 ENSMUST00000085026 ENSMUSP00000082101 TRANSLATION protein_coding - CCDS26157.1 1 416.0 0.0 10.24 0.0 55.5 0.0 -4,-2 0.2509 10 12.0 MINOR ENSMUSG00000021115 Vrk1 ENSMUST00000220629 ENSMUSP00000152109 TRANSLATION protein_coding - CCDS36551.1 1 440.0 0.0 10.24 0.0 55.5 0.0 -4,-2 0.1733 11 12.0 MINOR ENSMUSG00000021115 Vrk1 ENSMUST00000221312 ENSMUSP00000152721 TRANSLATION nonsense_mediated_decay - - 1 413.0 0.0 9.91 0.0 55.5 0.0 -4,-2 0.0553 9 -2.0 MINOR ENSMUSG00000021115 Vrk1 ENSMUST00000221485 ENSMUSP00000152249 TRANSLATION protein_coding stop - 3 63.0 0.0 1.33 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000094689 Ighv1-81 ENSMUST00000103548 ENSMUSP00000100329 TRANSLATION IG_V_gene stop - - 117.0 9.0 1.0 1.0 56.5 0.0 3,-2 0.8351 3 -2.0 PRINCIPAL:1 ENSMUSG00000033373 Fntb ENSMUST00000137826 ENSMUSP00000120713 TRANSLATION protein_coding - - 5 471.0 7.0 12.33 0.0 333.9 0.0 -4,-5 0.6901 4 18.0 PRINCIPAL:1 ENSMUSG00000033373 Fntb ENSMUST00000130605 - NO_TRANSLATION retained_intron ENSMUSG00000033373 Fntb ENSMUST00000136939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033373 Fntb ENSMUST00000123887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033373 Fntb ENSMUST00000125842 ENSMUSP00000116906 TRANSLATION nonsense_mediated_decay - - 5 74.0 4.0 1.5 0.0 89.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033373 Fntb ENSMUST00000154743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033373 Fntb ENSMUST00000041008 ENSMUSP00000035498 TRANSLATION protein_coding - CCDS25998.1 1 437.0 4.0 11.08 9.8 202.0 0.0 -4,-7 1.0 4 9.924 MINOR ENSMUSG00000033373 Fntb ENSMUST00000151864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043061 Tmem18 ENSMUST00000057151 ENSMUSP00000050729 TRANSLATION protein_coding - CCDS49043.1 1 140.0 0.0 3.5 4.0 156.8 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000043061 Tmem18 ENSMUST00000218826 - NO_TRANSLATION retained_intron ENSMUSG00000060499 Rpl10l ENSMUST00000081908 ENSMUSP00000100795 TRANSLATION protein_coding - CCDS49076.1 - 214.0 0.0 1.0 32.9 150.3 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021067 Sav1 ENSMUST00000220735 - NO_TRANSLATION retained_intron ENSMUSG00000021067 Sav1 ENSMUST00000021467 ENSMUSP00000021467 TRANSLATION protein_coding - CCDS25956.1 1 386.0 0.0 3.0 15.5 39.5 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000021067 Sav1 ENSMUST00000222827 - NO_TRANSLATION retained_intron ENSMUSG00000042808 Gpx2 ENSMUST00000082431 ENSMUSP00000081012 TRANSLATION protein_coding - CCDS25996.1 1 190.0 0.0 2.0 30.9 147.8 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000042808 Gpx2 ENSMUST00000221421 - NO_TRANSLATION retained_intron ENSMUSG00000040856 Dlk1 ENSMUST00000109842 ENSMUSP00000105468 TRANSLATION protein_coding - CCDS56863.1 1 312.0 14.0 3.85 2.1 97.8 6.0 3,-2 0.1767 3 16.622 MINOR ENSMUSG00000040856 Dlk1 ENSMUST00000109843 ENSMUSP00000105469 TRANSLATION protein_coding - CCDS49173.1 1 290.0 11.0 3.35 0.0 97.8 6.0 3,-2 0.038 3 13.092 MINOR ENSMUSG00000040856 Dlk1 ENSMUST00000109841 ENSMUSP00000105467 TRANSLATION protein_coding - - 5 292.0 11.0 3.35 0.0 97.8 6.0 3,-2 0.0083 3 13.092 MINOR ENSMUSG00000040856 Dlk1 ENSMUST00000109846 ENSMUSP00000105472 TRANSLATION protein_coding - CCDS49174.1 1 334.0 14.0 3.85 1.0 97.8 6.0 3,-2 0.1648 3 16.086 MINOR ENSMUSG00000040856 Dlk1 ENSMUST00000056110 ENSMUSP00000063104 TRANSLATION protein_coding - CCDS26168.1 1 385.0 14.0 4.05 5.1 123.0 6.0 3,-2 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000040856 Dlk1 ENSMUST00000173539 ENSMUSP00000133430 TRANSLATION protein_coding - - 5 310.0 14.0 3.85 2.1 97.8 6.0 3,-2 0.1138 3 16.622 MINOR ENSMUSG00000040856 Dlk1 ENSMUST00000124293 ENSMUSP00000133530 TRANSLATION protein_coding stop - 1 185.0 11.0 2.88 0.0 65.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040856 Dlk1 ENSMUST00000109844 ENSMUSP00000105470 TRANSLATION protein_coding - CCDS26168.1 1 385.0 14.0 4.05 5.1 123.0 6.0 3,-2 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000040856 Dlk1 ENSMUST00000174539 - NO_TRANSLATION retained_intron ENSMUSG00000040856 Dlk1 ENSMUST00000173812 ENSMUSP00000134308 TRANSLATION protein_coding start - 3 122.0 3.0 0.5 0.0 0.0 6.0 -4,-6 0.0047 - -2.0 MINOR ENSMUSG00000054383 Pnma1 ENSMUST00000061425 ENSMUSP00000060783 TRANSLATION protein_coding - CCDS26040.1 - 353.0 0.0 0.6 11.0 441.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035148 Gpr33 ENSMUST00000040161 ENSMUSP00000048059 TRANSLATION protein_coding - CCDS25904.1 1 339.0 0.0 0.5 7.1 108.0 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000054003 Tdrd9 ENSMUST00000193586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054003 Tdrd9 ENSMUST00000079009 ENSMUSP00000078022 TRANSLATION protein_coding - CCDS49184.1 1 1383.0 12.0 11.475 2.5 185.7 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000054003 Tdrd9 ENSMUST00000192125 ENSMUSP00000142236 TRANSLATION nonsense_mediated_decay start - 1 217.0 7.0 2.58 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000054003 Tdrd9 ENSMUST00000193630 - NO_TRANSLATION retained_intron ENSMUSG00000054003 Tdrd9 ENSMUST00000191808 ENSMUSP00000141719 TRANSLATION nonsense_mediated_decay start - 1 540.0 7.0 8.495 0.0 98.4 0.0 -4,-7 0.0004 - -2.0 MINOR ENSMUSG00000054003 Tdrd9 ENSMUST00000194800 - NO_TRANSLATION retained_intron ENSMUSG00000019969 Psen1 ENSMUST00000221072 - NO_TRANSLATION retained_intron ENSMUSG00000019969 Psen1 ENSMUST00000101225 ENSMUSP00000098786 TRANSLATION protein_coding - CCDS26030.1 5 467.0 0.0 8.3 13.8 549.9 6.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000019969 Psen1 ENSMUST00000221993 - NO_TRANSLATION retained_intron ENSMUSG00000019969 Psen1 ENSMUST00000223542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019969 Psen1 ENSMUST00000041806 ENSMUSP00000048363 TRANSLATION protein_coding - CCDS26030.1 1 467.0 0.0 8.3 13.8 549.9 6.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000096420 Ighd5-6 ENSMUST00000179932 - NO_TRANSLATION processed_transcript ENSMUSG00000096420 Ighd5-6 ENSMUST00000195858 ENSMUSP00000142162 TRANSLATION IG_D_gene start/stop - - 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000071179 Serpina16 ENSMUST00000095451 ENSMUSP00000093103 TRANSLATION protein_coding - CCDS79151.1 5 418.0 0.0 3.8 0.0 249.7 0.0 4,-1 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000071179 Serpina16 ENSMUST00000164148 ENSMUSP00000126933 TRANSLATION protein_coding - CCDS79151.1 5 418.0 0.0 3.8 0.0 249.7 0.0 4,-1 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000094546 Ighv1-26 ENSMUST00000103510 ENSMUSP00000100291 TRANSLATION IG_V_gene stop - - 117.0 5.0 1.0 1.0 55.7 0.0 3,-2 0.8322 1 -2.0 PRINCIPAL:1 ENSMUSG00000104452 Ighv8-8 ENSMUST00000192591 ENSMUSP00000142082 TRANSLATION IG_V_gene stop - - 119.0 3.0 1.0 0.0 49.6 0.0 4,-1 0.8332 1 -2.0 PRINCIPAL:1 ENSMUSG00000021109 Hif1a ENSMUST00000157041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021109 Hif1a ENSMUST00000149740 - NO_TRANSLATION retained_intron ENSMUSG00000021109 Hif1a ENSMUST00000110464 ENSMUSP00000106091 TRANSLATION protein_coding - - 1 258.0 0.0 2.95 0.0 28.1 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000021109 Hif1a ENSMUST00000021530 ENSMUSP00000021530 TRANSLATION protein_coding - CCDS25977.1 1 836.0 0.0 5.95 0.0 234.8 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000021109 Hif1a ENSMUST00000110461 ENSMUSP00000106088 TRANSLATION protein_coding - CCDS83968.1 1 810.0 0.0 5.95 0.1 234.8 0.0 -4,-5 0.4328 - 8.0 ALTERNATIVE:2 ENSMUSG00000021086 Ccdc175 ENSMUST00000021494 ENSMUSP00000021494 TRANSLATION protein_coding - CCDS49084.1 5 822.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.9298 - 0.0 PRINCIPAL:1 ENSMUSG00000020644 Id2 ENSMUST00000222667 ENSMUSP00000152069 TRANSLATION protein_coding - - - 155.0 0.0 0.8 0.0 47.2 0.0 -4,-1 0.0464 - 12.0 MINOR ENSMUSG00000020644 Id2 ENSMUST00000020974 ENSMUSP00000020974 TRANSLATION protein_coding - CCDS25846.1 1 134.0 0.0 0.8 32.3 47.2 0.0 -4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000020644 Id2 ENSMUST00000221761 ENSMUSP00000152052 TRANSLATION protein_coding - CCDS25846.1 5 134.0 0.0 0.8 32.3 47.2 0.0 -4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021209 Ppp4r4 ENSMUST00000189871 ENSMUSP00000139786 TRANSLATION nonsense_mediated_decay - - 1 790.0 0.0 2.2935 0.0 18.6 0.0 -4,-5 0.0899 12 -2.0 MINOR ENSMUSG00000021209 Ppp4r4 ENSMUST00000021631 ENSMUSP00000021631 TRANSLATION protein_coding - CCDS36532.1 1 875.0 0.0 2.2935 7.0 18.6 0.0 -4,-5 0.9749 14 10.07 ALTERNATIVE:1 ENSMUSG00000021209 Ppp4r4 ENSMUST00000187155 ENSMUSP00000140874 TRANSLATION protein_coding - - 5 766.0 0.0 2.2935 9.7 18.6 0.0 -2,-4 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000021209 Ppp4r4 ENSMUST00000190151 ENSMUSP00000139815 TRANSLATION protein_coding start/stop - 5 115.0 0.0 0.58 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000021209 Ppp4r4 ENSMUST00000190664 ENSMUSP00000140295 TRANSLATION protein_coding start/stop - 5 232.0 0.0 1.286 0.0 18.6 0.0 -4,-5 0.0153 4 -2.0 MINOR ENSMUSG00000096638 Ighv2-9 ENSMUST00000103451 ENSMUSP00000100232 TRANSLATION IG_V_gene stop - - 116.0 3.0 1.0 0.0 51.8 0.0 4,-1 0.833 1 -2.0 PRINCIPAL:1 ENSMUSG00000046314 Stxbp6 ENSMUST00000053768 ENSMUSP00000052639 TRANSLATION protein_coding - CCDS25898.1 5 210.0 0.0 1.4 34.7 111.2 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000046314 Stxbp6 ENSMUST00000130202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046314 Stxbp6 ENSMUST00000120531 ENSMUSP00000112551 TRANSLATION protein_coding - CCDS25898.1 1 210.0 0.0 1.4 34.7 111.2 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000046314 Stxbp6 ENSMUST00000143376 ENSMUSP00000117366 TRANSLATION protein_coding stop - 3 89.0 0.0 0.0 0.0 39.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000046314 Stxbp6 ENSMUST00000218249 - NO_TRANSLATION retained_intron ENSMUSG00000046314 Stxbp6 ENSMUST00000139750 ENSMUSP00000119307 TRANSLATION nonsense_mediated_decay - - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021068 Nin ENSMUST00000221141 - NO_TRANSLATION retained_intron ENSMUSG00000021068 Nin ENSMUST00000221579 ENSMUSP00000152553 TRANSLATION protein_coding start - 3 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0188 1 -2.0 MINOR ENSMUSG00000021068 Nin ENSMUST00000223469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021068 Nin ENSMUST00000221486 - NO_TRANSLATION retained_intron ENSMUSG00000021068 Nin ENSMUST00000085314 ENSMUSP00000082422 TRANSLATION protein_coding - CCDS36468.1 1 2113.0 3.0 0.0 0.1 0.0 0.0 -4,-5 0.4434 15 3.0 ALTERNATIVE:2 ENSMUSG00000021068 Nin ENSMUST00000223316 - NO_TRANSLATION retained_intron ENSMUSG00000021068 Nin ENSMUST00000222137 - NO_TRANSLATION retained_intron ENSMUSG00000021068 Nin ENSMUST00000222237 ENSMUSP00000152240 TRANSLATION protein_coding - CCDS36468.1 5 2113.0 3.0 0.0 0.1 0.0 0.0 -4,-5 0.4434 15 3.0 ALTERNATIVE:2 ENSMUSG00000021068 Nin ENSMUST00000220689 ENSMUSP00000152530 TRANSLATION protein_coding - - 1 1272.0 3.0 0.0 1.0 0.0 0.0 -4,-5 0.7268 8 3.0 PRINCIPAL:2 ENSMUSG00000021068 Nin ENSMUST00000095666 ENSMUSP00000093327 TRANSLATION protein_coding - CCDS36469.1 5 2035.0 3.0 0.0 0.1 0.0 0.0 -4,-5 0.4401 15 3.0 ALTERNATIVE:2 ENSMUSG00000021068 Nin ENSMUST00000222466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021068 Nin ENSMUST00000221275 ENSMUSP00000152096 TRANSLATION protein_coding stop - 3 178.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0186 1 -2.0 MINOR ENSMUSG00000021068 Nin ENSMUST00000222835 ENSMUSP00000152395 TRANSLATION protein_coding stop - 1 996.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.1606 5 -2.0 MINOR ENSMUSG00000021068 Nin ENSMUST00000021468 ENSMUSP00000021468 TRANSLATION protein_coding - CCDS36469.1 1 2035.0 3.0 0.0 0.1 0.0 0.0 -4,-5 0.4401 15 3.0 ALTERNATIVE:2 ENSMUSG00000021068 Nin ENSMUST00000239242 ENSMUSP00000159203 TRANSLATION protein_coding start/stop - - 114.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0204 1 -2.0 MINOR ENSMUSG00000021068 Nin ENSMUST00000169074 ENSMUSP00000129648 TRANSLATION protein_coding - CCDS36469.1 1 2035.0 3.0 0.0 0.1 0.0 0.0 -4,-5 0.4401 15 3.0 ALTERNATIVE:2 ENSMUSG00000021068 Nin ENSMUST00000223048 - NO_TRANSLATION retained_intron ENSMUSG00000021068 Nin ENSMUST00000223257 ENSMUSP00000152350 TRANSLATION protein_coding - - 1 1979.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.2476 14 3.0 ALTERNATIVE:2 ENSMUSG00000020607 Lratd1 ENSMUST00000221405 ENSMUSP00000152642 TRANSLATION protein_coding stop - 5 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0111 - -2.0 MINOR ENSMUSG00000020607 Lratd1 ENSMUST00000020926 ENSMUSP00000020926 TRANSLATION protein_coding - CCDS25820.1 1 292.0 0.0 0.4 7.4 0.0 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000072791 Abcb5 ENSMUST00000035515 ENSMUSP00000046177 TRANSLATION protein_coding - CCDS49198.1 1 1255.0 0.0 20.28 7.7 685.9 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000072791 Abcb5 ENSMUST00000177311 - NO_TRANSLATION retained_intron ENSMUSG00000072791 Abcb5 ENSMUST00000100982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041771 Slc24a4 ENSMUST00000159329 ENSMUSP00000124513 TRANSLATION protein_coding - - 1 564.0 0.0 1.592 0.0 182.7 11.0 -4,-2 0.0464 3 11.028 MINOR ENSMUSG00000041771 Slc24a4 ENSMUST00000161325 ENSMUSP00000125012 TRANSLATION protein_coding start - 1 603.0 0.0 1.592 6.9 198.9 12.0 -4,-2 0.9609 3 -2.0 MINOR ENSMUSG00000041771 Slc24a4 ENSMUST00000079020 ENSMUSP00000078030 TRANSLATION protein_coding - - 1 622.0 0.0 1.467 5.8 198.9 12.0 -4,-2 1.0 3 13.154 PRINCIPAL:1 ENSMUSG00000041771 Slc24a4 ENSMUST00000235018 ENSMUSP00000157352 TRANSLATION protein_coding - CCDS26117.1 - 605.0 0.0 1.467 1.1 198.9 12.0 0,-4 0.459 3 11.56 MINOR ENSMUSG00000021072 Tmx1 ENSMUST00000021471 ENSMUSP00000021471 TRANSLATION protein_coding - CCDS25958.1 1 278.0 8.0 5.88 7.7 73.1 1.0 4,-1 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000021072 Tmx1 ENSMUST00000160865 - NO_TRANSLATION retained_intron ENSMUSG00000021072 Tmx1 ENSMUST00000162277 ENSMUSP00000123893 TRANSLATION nonsense_mediated_decay start - 3 124.0 3.0 2.9 0.0 35.0 1.0 -4,-5 0.0015 4 -2.0 MINOR ENSMUSG00000036136 Fam110c ENSMUST00000041133 ENSMUSP00000041563 TRANSLATION protein_coding - CCDS25860.1 1 421.0 0.0 0.0 0.0 119.7 0.0 -4,-7 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000044456 Rin3 ENSMUST00000133820 ENSMUSP00000122646 TRANSLATION protein_coding - CCDS49145.1 1 900.0 0.0 1.0 0.1 96.0 0.0 -4,-7 0.4505 17 8.0 ALTERNATIVE:2 ENSMUSG00000044456 Rin3 ENSMUST00000056950 ENSMUSP00000060771 TRANSLATION protein_coding - CCDS26118.1 1 980.0 0.0 1.0 0.4 96.0 0.0 -4,-5 1.0 19 8.0 PRINCIPAL:2 ENSMUSG00000044456 Rin3 ENSMUST00000131076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044456 Rin3 ENSMUST00000137249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044456 Rin3 ENSMUST00000139686 - NO_TRANSLATION retained_intron ENSMUSG00000044456 Rin3 ENSMUST00000150795 ENSMUSP00000123268 TRANSLATION protein_coding - - 1 127.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000044456 Rin3 ENSMUST00000101114 ENSMUSP00000098673 TRANSLATION protein_coding - - 1 198.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000041341 Atg2b ENSMUST00000220960 - NO_TRANSLATION retained_intron ENSMUSG00000041341 Atg2b ENSMUST00000222395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041341 Atg2b ENSMUST00000041055 ENSMUSP00000037441 TRANSLATION protein_coding - CCDS36550.1 1 2075.0 0.0 0.0 19.9 166.8 0.0 -4,-7 1.0 42 10.0 PRINCIPAL:1 ENSMUSG00000041341 Atg2b ENSMUST00000221015 ENSMUSP00000152527 TRANSLATION protein_coding start - 1 916.0 0.0 0.0 0.0 107.8 0.0 -4,-5 0.0079 18 -2.0 MINOR ENSMUSG00000041341 Atg2b ENSMUST00000221568 - NO_TRANSLATION retained_intron ENSMUSG00000096199 Ptrhd1 ENSMUST00000179139 ENSMUSP00000137070 TRANSLATION protein_coding - CCDS56829.1 1 140.0 0.0 2.0 8.5 85.6 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000034145 Tmem63c ENSMUST00000154801 ENSMUSP00000119898 TRANSLATION nonsense_mediated_decay - - 1 179.0 0.0 0.78 0.0 0.0 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000034145 Tmem63c ENSMUST00000131878 ENSMUSP00000117023 TRANSLATION protein_coding - CCDS26069.1 5 802.0 0.0 3.1135 4.0 359.4 7.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000034145 Tmem63c ENSMUST00000146292 ENSMUSP00000119872 TRANSLATION protein_coding - CCDS26069.1 1 802.0 0.0 3.1135 4.0 359.4 7.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000034145 Tmem63c ENSMUST00000110187 ENSMUSP00000105816 TRANSLATION protein_coding - CCDS26069.1 1 802.0 0.0 3.1135 4.0 359.4 7.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000034145 Tmem63c ENSMUST00000156162 ENSMUSP00000122346 TRANSLATION protein_coding stop - 3 88.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000094198 Ighv1-50 ENSMUST00000103521 ENSMUSP00000100302 TRANSLATION IG_V_gene stop - - 117.0 8.0 1.0 1.0 57.8 0.0 4,-1 0.8343 - -2.0 PRINCIPAL:1 ENSMUSG00000021098 4930447C04Rik ENSMUST00000132067 ENSMUSP00000118104 TRANSLATION protein_coding stop - 1 143.0 0.0 1.15 0.0 115.4 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000021098 4930447C04Rik ENSMUST00000131033 ENSMUSP00000119777 TRANSLATION nonsense_mediated_decay - - 1 203.0 0.0 1.65 0.0 280.8 0.0 -4,-7 0.0372 - -2.0 MINOR ENSMUSG00000021098 4930447C04Rik ENSMUST00000136075 ENSMUSP00000121857 TRANSLATION protein_coding - - 1 88.0 0.0 0.45 0.0 0.0 0.0 -3,-6 0.0 - 1.638 MINOR ENSMUSG00000021098 4930447C04Rik ENSMUST00000044000 ENSMUSP00000035376 TRANSLATION protein_coding - CCDS25971.1 1 574.0 0.0 1.65 0.1 905.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021098 4930447C04Rik ENSMUST00000143960 ENSMUSP00000116391 TRANSLATION nonsense_mediated_decay start - 3 71.0 0.0 0.0 0.0 74.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021098 4930447C04Rik ENSMUST00000132901 - NO_TRANSLATION retained_intron ENSMUSG00000021098 4930447C04Rik ENSMUST00000130635 ENSMUSP00000120109 TRANSLATION protein_coding stop - 1 107.0 0.0 1.05 0.0 120.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021098 4930447C04Rik ENSMUST00000132016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021252 Erg28 ENSMUST00000148323 - NO_TRANSLATION retained_intron ENSMUSG00000021252 Erg28 ENSMUST00000021676 ENSMUSP00000021676 TRANSLATION protein_coding - CCDS26063.1 1 140.0 0.0 3.83 33.9 134.4 4.0 0,-4 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000021252 Erg28 ENSMUST00000142331 ENSMUSP00000114987 TRANSLATION protein_coding stop - 3 54.0 0.0 1.33 0.0 41.7 2.0 0,-4 0.0015 1 -2.0 MINOR ENSMUSG00000021252 Erg28 ENSMUST00000124311 - NO_TRANSLATION retained_intron ENSMUSG00000021252 Erg28 ENSMUST00000131681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000701 Tcl1b5 ENSMUST00000000717 ENSMUSP00000000717 TRANSLATION protein_coding - CCDS36546.1 1 121.0 0.0 0.6 0.0 130.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000076665 Ighv7-1 ENSMUST00000103474 ENSMUSP00000100255 TRANSLATION IG_V_gene stop - - 121.0 6.0 1.25 0.0 49.5 0.0 4,-1 0.8248 5 -2.0 PRINCIPAL:1 ENSMUSG00000021886 Gpr65 ENSMUST00000075072 ENSMUSP00000074581 TRANSLATION protein_coding - CCDS26096.1 1 337.0 0.0 0.6 8.7 139.4 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021038 Vipas39 ENSMUST00000222350 - NO_TRANSLATION retained_intron ENSMUSG00000021038 Vipas39 ENSMUST00000021426 ENSMUSP00000021426 TRANSLATION protein_coding - CCDS26074.1 1 472.0 0.0 9.91 0.0 27.8 0.0 -4,-5 0.1073 15 11.202 MINOR ENSMUSG00000021038 Vipas39 ENSMUST00000221707 - NO_TRANSLATION retained_intron ENSMUSG00000021038 Vipas39 ENSMUST00000179379 ENSMUSP00000137190 TRANSLATION protein_coding - CCDS26074.1 1 472.0 0.0 9.91 0.0 27.8 0.0 -4,-5 0.1073 15 11.202 MINOR ENSMUSG00000021038 Vipas39 ENSMUST00000220858 - NO_TRANSLATION retained_intron ENSMUSG00000021038 Vipas39 ENSMUST00000072744 ENSMUSP00000072527 TRANSLATION protein_coding - CCDS49119.1 1 491.0 0.0 10.31 20.0 27.8 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000096459 Ighv9-3 ENSMUST00000103473 ENSMUSP00000100254 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 1.0 49.9 0.0 4,-1 0.8362 2 -2.0 PRINCIPAL:1 ENSMUSG00000049106 Dcaf5 ENSMUST00000218728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049106 Dcaf5 ENSMUST00000054145 ENSMUSP00000052755 TRANSLATION protein_coding - CCDS26013.1 1 946.0 0.0 3.6 6.6 54.6 0.0 -3,1 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000049106 Dcaf5 ENSMUST00000218498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052609 Plekhg3 ENSMUST00000219426 - NO_TRANSLATION retained_intron ENSMUSG00000052609 Plekhg3 ENSMUST00000075249 ENSMUSP00000074729 TRANSLATION protein_coding - CCDS25994.1 1 1341.0 0.0 8.53 1.3 184.0 0.0 -4,-2 1.0 14 9.0 PRINCIPAL:2 ENSMUSG00000052609 Plekhg3 ENSMUST00000218461 - NO_TRANSLATION retained_intron ENSMUSG00000052609 Plekhg3 ENSMUST00000217730 ENSMUSP00000151564 TRANSLATION protein_coding stop - 2 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0286 - -2.0 MINOR ENSMUSG00000052609 Plekhg3 ENSMUST00000218427 - NO_TRANSLATION retained_intron ENSMUSG00000052609 Plekhg3 ENSMUST00000219063 ENSMUSP00000151851 TRANSLATION protein_coding - - 5 1340.0 0.0 8.53 1.0 184.0 0.0 -4,-2 0.6906 15 8.0 ALTERNATIVE:2 ENSMUSG00000052609 Plekhg3 ENSMUST00000219751 ENSMUSP00000151704 TRANSLATION protein_coding stop - 3 143.0 0.0 1.5 0.0 37.3 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000052609 Plekhg3 ENSMUST00000218357 - NO_TRANSLATION retained_intron ENSMUSG00000052609 Plekhg3 ENSMUST00000218380 ENSMUSP00000151867 TRANSLATION protein_coding stop - 3 91.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000021123 Rdh12 ENSMUST00000140823 ENSMUSP00000118851 TRANSLATION protein_coding stop - 3 136.0 16.0 3.514 0.0 74.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021123 Rdh12 ENSMUST00000122227 ENSMUSP00000112543 TRANSLATION protein_coding - CCDS83971.1 1 304.0 29.0 6.2 0.0 85.6 0.0 2,-2 0.0547 4 14.142 MINOR ENSMUSG00000021123 Rdh12 ENSMUST00000151980 - NO_TRANSLATION retained_intron ENSMUSG00000021123 Rdh12 ENSMUST00000021548 ENSMUSP00000021548 TRANSLATION protein_coding - CCDS26009.1 1 316.0 30.0 6.7 18.5 122.1 0.0 2,-2 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000035799 Twist1 ENSMUST00000049089 ENSMUSP00000040089 TRANSLATION protein_coding - CCDS25879.1 1 206.0 0.0 0.8 5.7 62.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000034442 Trmt5 ENSMUST00000220701 ENSMUSP00000152289 TRANSLATION protein_coding start - 3 66.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0034 - -2.0 MINOR ENSMUSG00000034442 Trmt5 ENSMUST00000116420 ENSMUSP00000112121 TRANSLATION protein_coding - CCDS36474.1 1 501.0 18.0 4.0 4.1 0.0 0.0 -4,-1 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000034442 Trmt5 ENSMUST00000221189 ENSMUSP00000152619 TRANSLATION protein_coding stop - 5 144.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0041 3 -2.0 MINOR ENSMUSG00000011148 Adssl1 ENSMUST00000021726 ENSMUSP00000021726 TRANSLATION protein_coding - CCDS26192.1 1 457.0 17.0 11.25 20.3 603.8 0.0 -4,-7 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000011148 Adssl1 ENSMUST00000223044 - NO_TRANSLATION retained_intron ENSMUSG00000011148 Adssl1 ENSMUST00000221720 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011148 Adssl1 ENSMUST00000180015 ENSMUSP00000136572 TRANSLATION protein_coding - - 1 480.0 17.0 10.5 0.0 579.5 0.0 -4,-7 0.0257 21 15.042 MINOR ENSMUSG00000095897 Ighd2-5 ENSMUST00000178549 ENSMUSP00000141697 TRANSLATION IG_D_gene start/stop - - 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000037669 Ldah ENSMUST00000037383 ENSMUSP00000042285 TRANSLATION protein_coding - CCDS25798.1 1 326.0 2.0 7.25 1.8 269.2 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000037669 Ldah ENSMUST00000219058 ENSMUSP00000151541 TRANSLATION nonsense_mediated_decay - - 1 66.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037669 Ldah ENSMUST00000218883 ENSMUSP00000151802 TRANSLATION protein_coding stop - 3 190.0 1.0 4.75 0.0 166.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000037669 Ldah ENSMUST00000217872 ENSMUSP00000151257 TRANSLATION protein_coding start - 2 116.0 0.0 2.25 0.0 75.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000037669 Ldah ENSMUST00000220274 ENSMUSP00000151309 TRANSLATION protein_coding stop - 3 117.0 0.0 3.0 0.0 62.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000037669 Ldah ENSMUST00000169104 ENSMUSP00000129424 TRANSLATION protein_coding - CCDS49023.1 1 236.0 1.0 5.5 1.0 184.2 0.0 -4,-5 0.048 7 4.402 MINOR ENSMUSG00000037669 Ldah ENSMUST00000220345 ENSMUSP00000151631 TRANSLATION nonsense_mediated_decay - - 5 66.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037669 Ldah ENSMUST00000218086 ENSMUSP00000151612 TRANSLATION protein_coding - - 1 272.0 1.0 6.25 0.0 208.7 0.0 -4,-5 0.0005 8 7.372 MINOR ENSMUSG00000037669 Ldah ENSMUST00000219043 ENSMUSP00000151289 TRANSLATION nonsense_mediated_decay - - 1 114.0 0.0 2.7 0.0 52.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000037669 Ldah ENSMUST00000217999 ENSMUSP00000151852 TRANSLATION protein_coding stop - 5 208.0 1.0 4.75 0.0 148.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000037669 Ldah ENSMUST00000219357 ENSMUSP00000151362 TRANSLATION nonsense_mediated_decay - - 3 114.0 0.0 2.7 0.0 52.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037669 Ldah ENSMUST00000219532 ENSMUSP00000151941 TRANSLATION protein_coding start - 2 61.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000037669 Ldah ENSMUST00000217763 - NO_TRANSLATION retained_intron ENSMUSG00000037669 Ldah ENSMUST00000218305 ENSMUSP00000151881 TRANSLATION nonsense_mediated_decay - - 1 66.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000001225 Slc26a3 ENSMUST00000167432 ENSMUSP00000130676 TRANSLATION protein_coding stop - 3 235.0 0.0 3.15 0.0 149.4 2.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000001225 Slc26a3 ENSMUST00000109275 - NO_TRANSLATION retained_intron ENSMUSG00000001225 Slc26a3 ENSMUST00000165816 - NO_TRANSLATION retained_intron ENSMUSG00000001225 Slc26a3 ENSMUST00000001254 ENSMUSP00000001254 TRANSLATION protein_coding - CCDS25863.1 1 757.0 0.0 11.1 15.1 506.8 7.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000001225 Slc26a3 ENSMUST00000168209 - NO_TRANSLATION retained_intron ENSMUSG00000001225 Slc26a3 ENSMUST00000110854 ENSMUSP00000106478 TRANSLATION nonsense_mediated_decay - - 2 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001225 Slc26a3 ENSMUST00000171616 ENSMUSP00000128722 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042320 Prox2 ENSMUST00000221003 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042320 Prox2 ENSMUST00000110249 ENSMUSP00000105878 TRANSLATION protein_coding - CCDS36495.1 1 593.0 0.0 3.0 0.4 262.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042320 Prox2 ENSMUST00000177289 ENSMUSP00000135881 TRANSLATION protein_coding - CCDS36495.1 1 593.0 0.0 3.0 0.4 262.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042320 Prox2 ENSMUST00000191324 - NO_TRANSLATION retained_intron ENSMUSG00000049751 Rpl36al ENSMUST00000054544 ENSMUSP00000059766 TRANSLATION protein_coding - CCDS25946.1 1 106.0 2.0 1.0 36.9 137.7 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000049751 Rpl36al ENSMUST00000110620 ENSMUSP00000106250 TRANSLATION protein_coding - CCDS25946.1 2 106.0 2.0 1.0 36.9 137.7 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000049751 Rpl36al ENSMUST00000110619 ENSMUSP00000106249 TRANSLATION protein_coding - CCDS25946.1 - 106.0 2.0 1.0 36.9 137.7 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000103254 Ighv1-15 ENSMUST00000192077 ENSMUSP00000141908 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 1.0 51.9 0.0 4,-1 0.8362 2 -2.0 PRINCIPAL:1 ENSMUSG00000096767 Ighv1-62-3 ENSMUST00000103532 ENSMUSP00000100313 TRANSLATION IG_V_gene stop - - 117.0 6.0 1.1 1.0 50.2 0.0 3,-2 0.8286 - -2.0 PRINCIPAL:1 ENSMUSG00000020636 Allc ENSMUST00000110917 ENSMUSP00000106542 TRANSLATION protein_coding - CCDS25850.1 1 414.0 0.0 10.0 7.2 293.7 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000020636 Allc ENSMUST00000020965 ENSMUSP00000020965 TRANSLATION protein_coding - CCDS25850.1 1 414.0 0.0 10.0 7.2 293.7 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000090258 Churc1 ENSMUST00000110399 ENSMUSP00000106029 TRANSLATION protein_coding - - 1 70.0 5.0 1.5 0.7 90.4 0.0 -4,-5 0.0013 - 4.332 MINOR ENSMUSG00000090258 Churc1 ENSMUST00000126408 ENSMUSP00000122587 TRANSLATION protein_coding - - 2 35.0 2.0 1.0 0.0 48.7 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000090258 Churc1 ENSMUST00000041262 ENSMUSP00000047015 TRANSLATION protein_coding - CCDS36478.1 1 112.0 12.0 3.0 29.2 191.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000090258 Churc1 ENSMUST00000152917 - NO_TRANSLATION retained_intron ENSMUSG00000096464 Ighv2-2 ENSMUST00000103443 ENSMUSP00000100224 TRANSLATION IG_V_gene stop - - 116.0 3.0 1.0 0.0 48.7 0.0 4,-1 0.8332 1 -2.0 PRINCIPAL:1 ENSMUSG00000020953 Coch ENSMUST00000218382 - NO_TRANSLATION retained_intron ENSMUSG00000020953 Coch ENSMUST00000164782 ENSMUSP00000128127 TRANSLATION protein_coding - CCDS25901.1 1 552.0 9.0 5.8 6.3 331.8 0.0 3,-2 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000020953 Coch ENSMUST00000220173 - NO_TRANSLATION retained_intron ENSMUSG00000020953 Coch ENSMUST00000085412 ENSMUSP00000082533 TRANSLATION protein_coding - CCDS25901.1 1 552.0 9.0 5.8 6.3 331.8 0.0 3,-2 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000094322 Ighv9-4 ENSMUST00000194159 ENSMUSP00000141555 TRANSLATION IG_V_gene stop - - 117.0 4.0 1.0 1.0 47.2 0.0 3,-2 0.8545 1 -2.0 PRINCIPAL:5 ENSMUSG00000094322 Ighv9-4 ENSMUST00000103482 ENSMUSP00000100263 TRANSLATION IG_V_gene start/stop - - 98.0 4.0 1.0 0.0 47.2 0.0 -4,-5 0.0588 1 -2.0 ALTERNATIVE:2 ENSMUSG00000076676 Ighv12-3 ENSMUST00000103485 ENSMUSP00000100266 TRANSLATION IG_V_gene stop - - 117.0 3.0 1.0 0.0 41.0 0.0 4,-1 0.8292 - -2.0 PRINCIPAL:1 ENSMUSG00000020583 Matn3 ENSMUST00000020899 ENSMUSP00000020899 TRANSLATION protein_coding - CCDS25806.1 1 481.0 14.0 5.0 0.0 296.4 0.0 3,-2 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000095592 Ighd5-7 ENSMUST00000178483 ENSMUSP00000141202 TRANSLATION IG_D_gene start/stop - - 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000020661 Dnmt3a ENSMUST00000172913 ENSMUSP00000134496 TRANSLATION protein_coding start - 3 72.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020661 Dnmt3a ENSMUST00000174272 - NO_TRANSLATION retained_intron ENSMUSG00000020661 Dnmt3a ENSMUST00000085826 - NO_TRANSLATION retained_intron ENSMUSG00000020661 Dnmt3a ENSMUST00000174774 ENSMUSP00000134529 TRANSLATION protein_coding stop - 5 181.0 0.0 3.33 0.0 49.2 0.0 -4,-5 0.0064 3 -2.0 MINOR ENSMUSG00000020661 Dnmt3a ENSMUST00000173700 - NO_TRANSLATION retained_intron ENSMUSG00000020661 Dnmt3a ENSMUST00000172719 ENSMUSP00000133501 TRANSLATION protein_coding stop - 5 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020661 Dnmt3a ENSMUST00000172816 ENSMUSP00000134632 TRANSLATION protein_coding stop - 2 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020661 Dnmt3a ENSMUST00000172509 ENSMUSP00000133869 TRANSLATION protein_coding stop - 5 332.0 0.0 3.33 0.0 49.2 0.0 -4,-5 0.013 5 -2.0 MINOR ENSMUSG00000020661 Dnmt3a ENSMUST00000173197 ENSMUSP00000133567 TRANSLATION protein_coding start - 3 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000020661 Dnmt3a ENSMUST00000174733 ENSMUSP00000134492 TRANSLATION nonsense_mediated_decay start - 5 107.0 14.0 2.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000020661 Dnmt3a ENSMUST00000174483 ENSMUSP00000133938 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020661 Dnmt3a ENSMUST00000172879 ENSMUSP00000134689 TRANSLATION protein_coding stop - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000020661 Dnmt3a ENSMUST00000174102 ENSMUSP00000134480 TRANSLATION protein_coding stop - 3 140.0 0.0 1.0 0.0 28.9 0.0 -4,-5 0.0008 1 -2.0 MINOR ENSMUSG00000020661 Dnmt3a ENSMUST00000174817 ENSMUSP00000134009 TRANSLATION protein_coding - CCDS36397.1 1 908.0 26.0 14.91 12.2 49.2 0.0 -4,-5 1.0 13 17.0 PRINCIPAL:3 ENSMUSG00000020661 Dnmt3a ENSMUST00000172689 ENSMUSP00000133543 TRANSLATION protein_coding - CCDS25784.1 1 689.0 26.0 14.91 11.0 49.2 0.0 -4,-5 0.8685 10 16.679 ALTERNATIVE:1 ENSMUSG00000020661 Dnmt3a ENSMUST00000020991 ENSMUSP00000020991 TRANSLATION protein_coding - CCDS36397.1 1 908.0 26.0 14.91 12.2 49.2 0.0 -4,-5 1.0 13 17.0 PRINCIPAL:3 ENSMUSG00000020661 Dnmt3a ENSMUST00000172749 ENSMUSP00000134567 TRANSLATION protein_coding start/stop - 3 184.0 0.0 3.16 0.0 44.2 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000072974 Gm4787 ENSMUST00000062182 ENSMUSP00000077390 TRANSLATION protein_coding - CCDS26018.1 - 748.0 9.0 0.16 0.1 285.8 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000020605 Hs1bp3 ENSMUST00000020927 ENSMUSP00000020927 TRANSLATION protein_coding - CCDS49024.1 1 395.0 0.0 0.0 1.1 56.1 0.0 -4,-2 0.9886 12 6.892 PRINCIPAL:1 ENSMUSG00000020605 Hs1bp3 ENSMUST00000220199 ENSMUSP00000151262 TRANSLATION protein_coding stop - 2 109.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000020605 Hs1bp3 ENSMUST00000220300 ENSMUSP00000151390 TRANSLATION protein_coding stop - 3 157.0 0.0 0.0 0.0 57.1 0.0 -4,-7 0.0478 7 -2.0 MINOR ENSMUSG00000095444 Ighd2-4 ENSMUST00000179560 ENSMUSP00000141415 TRANSLATION IG_D_gene start/stop - - 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000034601 2700049A03Rik ENSMUST00000134748 ENSMUSP00000114210 TRANSLATION nonsense_mediated_decay start - 3 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000034601 2700049A03Rik ENSMUST00000045907 ENSMUSP00000044701 TRANSLATION protein_coding - CCDS49082.1 1 1432.0 0.0 0.0 0.0 1910.8 0.0 -4,-7 0.5371 15 2.0 ALTERNATIVE:2 ENSMUSG00000034601 2700049A03Rik ENSMUST00000149564 ENSMUSP00000118956 TRANSLATION protein_coding - CCDS49081.1 1 1520.0 0.0 0.0 0.0 1910.8 0.0 -4,-7 1.0 15 2.0 PRINCIPAL:2 ENSMUSG00000021103 Mnat1 ENSMUST00000187549 ENSMUSP00000141036 TRANSLATION protein_coding - - 5 249.0 9.0 6.0 0.0 232.5 0.0 -4,-6 0.0015 4 13.494 MINOR ENSMUSG00000021103 Mnat1 ENSMUST00000189644 ENSMUSP00000141146 TRANSLATION nonsense_mediated_decay - - 1 93.0 9.0 2.0 0.0 74.5 0.0 -4,-6 0.0005 2 -2.0 MINOR ENSMUSG00000021103 Mnat1 ENSMUST00000021523 ENSMUSP00000021523 TRANSLATION protein_coding - CCDS49087.1 1 309.0 9.0 8.0 34.2 240.9 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000102313 Ighv1-62-1 ENSMUST00000171270 ENSMUSP00000132101 TRANSLATION IG_V_gene start/stop - - 30.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 ALTERNATIVE:2 ENSMUSG00000102313 Ighv1-62-1 ENSMUST00000103503 ENSMUSP00000100284 TRANSLATION IG_V_gene stop - - 116.0 7.0 2.0 0.0 52.3 0.0 1,-2 0.8079 1 -2.0 PRINCIPAL:5 ENSMUSG00000096498 Ighv2-5 ENSMUST00000195707 ENSMUSP00000142302 TRANSLATION IG_V_gene stop - - 116.0 3.0 1.0 0.0 50.4 0.0 4,-1 0.7061 1 -2.0 PRINCIPAL:5 ENSMUSG00000096498 Ighv2-5 ENSMUST00000103449 ENSMUSP00000100230 TRANSLATION IG_V_gene stop - - 115.0 3.0 1.25 0.0 50.4 0.0 4,-1 0.3507 1 -2.0 ALTERNATIVE:2 ENSMUSG00000095029 Gm36079 ENSMUST00000177659 ENSMUSP00000137272 TRANSLATION protein_coding - - - 190.0 0.0 0.0 0.0 214.3 0.0 -4,-5 0.7313 - 6.0 PRINCIPAL:1 ENSMUSG00000046573 Lyrm4 ENSMUST00000053265 ENSMUSP00000060779 TRANSLATION protein_coding - CCDS36633.1 1 91.0 0.0 2.5 24.2 84.9 0.0 -4,-1 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000048996 Or1f12 ENSMUST00000218154 ENSMUSP00000151506 TRANSLATION protein_coding - CCDS26279.2 - 328.0 0.0 1.0 0.0 198.9 7.0 -4,-6 0.3288 - 12.0 MINOR ENSMUSG00000048996 Or1f12 ENSMUST00000175637 ENSMUSP00000135446 TRANSLATION protein_coding - - 3 313.0 0.0 1.0 9.4 198.9 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048996 Or1f12 ENSMUST00000168629 ENSMUSP00000132776 TRANSLATION protein_coding - - - 313.0 0.0 1.0 9.4 198.9 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048996 Or1f12 ENSMUST00000205976 ENSMUSP00000146107 TRANSLATION protein_coding - - 5 313.0 0.0 1.0 9.4 198.9 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021555 Naa35 ENSMUST00000166923 ENSMUSP00000128097 TRANSLATION protein_coding stop - 5 236.0 0.0 0.5525 0.0 0.0 0.0 -4,-5 0.0117 5 -2.0 MINOR ENSMUSG00000021555 Naa35 ENSMUST00000172419 ENSMUSP00000126079 TRANSLATION protein_coding start/stop - 5 402.0 0.0 0.8165 0.0 0.0 0.0 -4,-5 0.0147 10 -2.0 MINOR ENSMUSG00000021555 Naa35 ENSMUST00000164011 ENSMUSP00000127270 TRANSLATION nonsense_mediated_decay start - 5 152.0 0.0 0.614 0.0 0.0 0.0 -4,-6 0.0058 3 -2.0 MINOR ENSMUSG00000021555 Naa35 ENSMUST00000168367 ENSMUSP00000127466 TRANSLATION protein_coding stop - 5 111.0 0.0 0.39 0.0 0.0 0.0 -4,-5 0.0045 3 -2.0 MINOR ENSMUSG00000021555 Naa35 ENSMUST00000168242 - NO_TRANSLATION retained_intron ENSMUSG00000021555 Naa35 ENSMUST00000225670 - NO_TRANSLATION retained_intron ENSMUSG00000021555 Naa35 ENSMUST00000165253 ENSMUSP00000129049 TRANSLATION protein_coding start/stop - 3 147.0 0.0 0.45 0.0 0.0 0.0 -4,-6 0.0075 1 -2.0 MINOR ENSMUSG00000021555 Naa35 ENSMUST00000163395 - NO_TRANSLATION retained_intron ENSMUSG00000021555 Naa35 ENSMUST00000165841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021555 Naa35 ENSMUST00000165129 - NO_TRANSLATION retained_intron ENSMUSG00000021555 Naa35 ENSMUST00000168633 - NO_TRANSLATION retained_intron ENSMUSG00000021555 Naa35 ENSMUST00000163521 - NO_TRANSLATION retained_intron ENSMUSG00000021555 Naa35 ENSMUST00000172118 - NO_TRANSLATION retained_intron ENSMUSG00000021555 Naa35 ENSMUST00000224194 - NO_TRANSLATION retained_intron ENSMUSG00000021555 Naa35 ENSMUST00000022038 ENSMUSP00000022038 TRANSLATION protein_coding - CCDS26575.1 1 725.0 0.0 1.2665 33.5 0.0 0.0 -4,-5 1.0 15 10.0 PRINCIPAL:1 ENSMUSG00000021555 Naa35 ENSMUST00000171391 - NO_TRANSLATION retained_intron ENSMUSG00000021555 Naa35 ENSMUST00000172166 ENSMUSP00000132674 TRANSLATION protein_coding start/stop - 3 213.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0191 5 -2.0 MINOR ENSMUSG00000060404 Or2w1b ENSMUST00000213326 ENSMUSP00000150565 TRANSLATION protein_coding - - 5 317.0 0.0 1.0 11.4 156.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060404 Or2w1b ENSMUST00000215941 ENSMUSP00000151041 TRANSLATION protein_coding - - 5 317.0 0.0 1.0 11.4 156.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060404 Or2w1b ENSMUST00000213922 ENSMUSP00000150327 TRANSLATION protein_coding - - 5 317.0 0.0 1.0 11.4 156.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060404 Or2w1b ENSMUST00000215207 ENSMUSP00000150616 TRANSLATION protein_coding - - 5 317.0 0.0 1.0 11.4 156.8 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021577 Sdha ENSMUST00000160667 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021577 Sdha ENSMUST00000022062 ENSMUSP00000022062 TRANSLATION protein_coding - CCDS26643.1 1 664.0 47.0 12.75 16.5 560.6 0.0 -4,0 1.0 33 22.0 PRINCIPAL:1 ENSMUSG00000021577 Sdha ENSMUST00000161086 - NO_TRANSLATION retained_intron ENSMUSG00000021577 Sdha ENSMUST00000161434 - NO_TRANSLATION retained_intron ENSMUSG00000021577 Sdha ENSMUST00000160400 - NO_TRANSLATION retained_intron ENSMUSG00000021577 Sdha ENSMUST00000161456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021577 Sdha ENSMUST00000221594 ENSMUSP00000152298 TRANSLATION protein_coding start - 3 233.0 22.0 3.75 0.0 147.5 0.0 -4,0 0.0 8 -2.0 MINOR ENSMUSG00000021577 Sdha ENSMUST00000162137 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021577 Sdha ENSMUST00000160900 - NO_TRANSLATION retained_intron ENSMUSG00000006191 Cdkal1 ENSMUST00000140278 ENSMUSP00000122249 TRANSLATION nonsense_mediated_decay - - 1 520.0 0.0 12.0 0.0 171.4 0.0 -4,-5 0.042 8 -2.0 MINOR ENSMUSG00000006191 Cdkal1 ENSMUST00000153086 - NO_TRANSLATION retained_intron ENSMUSG00000006191 Cdkal1 ENSMUST00000006353 ENSMUSP00000006353 TRANSLATION protein_coding - CCDS26412.1 1 578.0 0.0 12.0 0.0 171.4 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000006191 Cdkal1 ENSMUST00000137225 ENSMUSP00000117404 TRANSLATION nonsense_mediated_decay - - 1 218.0 0.0 4.25 0.0 77.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000006191 Cdkal1 ENSMUST00000124532 ENSMUSP00000118815 TRANSLATION protein_coding stop - 3 96.0 0.0 1.0 0.0 24.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006191 Cdkal1 ENSMUST00000154209 ENSMUSP00000121792 TRANSLATION protein_coding start - 2 107.0 0.0 3.066 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006191 Cdkal1 ENSMUST00000131792 - NO_TRANSLATION retained_intron ENSMUSG00000006191 Cdkal1 ENSMUST00000129231 ENSMUSP00000120432 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 1.0 0.0 23.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006191 Cdkal1 ENSMUST00000110323 ENSMUSP00000105952 TRANSLATION protein_coding start - 3 80.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000006191 Cdkal1 ENSMUST00000123641 - NO_TRANSLATION retained_intron ENSMUSG00000006191 Cdkal1 ENSMUST00000091674 ENSMUSP00000089262 TRANSLATION protein_coding - CCDS84016.1 1 136.0 0.0 1.0 0.0 24.8 0.0 -4,-5 0.0283 2 0.0 MINOR ENSMUSG00000074847 Gm10775 ENSMUST00000099425 ENSMUSP00000097022 TRANSLATION protein_coding - - 1 127.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000021622 Ckmt2 ENSMUST00000022122 ENSMUSP00000022122 TRANSLATION protein_coding - CCDS26679.1 1 419.0 22.0 7.95 33.9 376.5 0.0 -1,0 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000047889 Serpinb6d ENSMUST00000059637 ENSMUSP00000063025 TRANSLATION protein_coding - CCDS36631.1 1 375.0 0.0 4.8 8.8 391.8 0.0 -4,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000047889 Serpinb6d ENSMUST00000221681 ENSMUSP00000152621 TRANSLATION protein_coding - CCDS36631.1 1 375.0 0.0 4.8 8.8 391.8 0.0 -4,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000037851 Iars ENSMUST00000164260 ENSMUSP00000126806 TRANSLATION protein_coding - CCDS36659.1 5 1262.0 16.0 21.45 28.7 890.8 0.0 -4,-5 1.0 42 22.0 PRINCIPAL:1 ENSMUSG00000037851 Iars ENSMUST00000172254 ENSMUSP00000130058 TRANSLATION protein_coding stop - 2 92.0 6.0 2.0 0.0 104.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037851 Iars ENSMUST00000164275 - NO_TRANSLATION retained_intron ENSMUSG00000037851 Iars ENSMUST00000165270 - NO_TRANSLATION retained_intron ENSMUSG00000037851 Iars ENSMUST00000171510 ENSMUSP00000130204 TRANSLATION nonsense_mediated_decay start - 3 96.0 0.0 1.9 0.0 89.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037851 Iars ENSMUST00000165316 ENSMUSP00000132082 TRANSLATION protein_coding - CCDS36659.1 1 1262.0 16.0 21.45 28.7 890.8 0.0 -4,-5 1.0 42 22.0 PRINCIPAL:1 ENSMUSG00000037851 Iars ENSMUST00000165063 - NO_TRANSLATION retained_intron ENSMUSG00000037851 Iars ENSMUST00000165656 - NO_TRANSLATION retained_intron ENSMUSG00000063200 Nol7 ENSMUST00000222754 ENSMUSP00000152886 TRANSLATION protein_coding start - 3 82.0 0.0 0.0 0.0 94.8 0.0 -4,-5 0.0059 1 -2.0 MINOR ENSMUSG00000063200 Nol7 ENSMUST00000222305 - NO_TRANSLATION retained_intron ENSMUSG00000063200 Nol7 ENSMUST00000223188 - NO_TRANSLATION retained_intron ENSMUSG00000063200 Nol7 ENSMUST00000222416 - NO_TRANSLATION retained_intron ENSMUSG00000063200 Nol7 ENSMUST00000222499 ENSMUSP00000152581 TRANSLATION protein_coding - - 1 243.0 0.0 0.0 0.0 106.6 0.0 -4,-7 0.0771 1 2.0 ALTERNATIVE:2 ENSMUSG00000063200 Nol7 ENSMUST00000220997 - NO_TRANSLATION retained_intron ENSMUSG00000063200 Nol7 ENSMUST00000071926 ENSMUSP00000071818 TRANSLATION protein_coding - CCDS36644.1 1 254.0 0.0 0.0 2.3 106.6 0.0 -4,-7 1.0 2 3.0 PRINCIPAL:2 ENSMUSG00000021322 Aoah ENSMUST00000223364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021322 Aoah ENSMUST00000222135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021322 Aoah ENSMUST00000021757 ENSMUSP00000021757 TRANSLATION protein_coding - CCDS26266.1 1 574.0 0.0 15.8 9.9 91.9 0.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000021322 Aoah ENSMUST00000221982 ENSMUSP00000152286 TRANSLATION protein_coding - - 1 145.0 0.0 2.95 0.0 22.7 0.0 3,-2 0.0 1 1.482 MINOR ENSMUSG00000015937 Macroh2a1 ENSMUST00000016081 ENSMUSP00000016081 TRANSLATION protein_coding - CCDS26557.1 1 372.0 0.0 7.4 32.8 215.4 0.0 -4,-7 0.9581 14 12.0 PRINCIPAL:3 ENSMUSG00000015937 Macroh2a1 ENSMUST00000139511 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015937 Macroh2a1 ENSMUST00000154564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015937 Macroh2a1 ENSMUST00000141589 - NO_TRANSLATION retained_intron ENSMUSG00000015937 Macroh2a1 ENSMUST00000154778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015937 Macroh2a1 ENSMUST00000141031 - NO_TRANSLATION retained_intron ENSMUSG00000015937 Macroh2a1 ENSMUST00000137835 - NO_TRANSLATION retained_intron ENSMUSG00000015937 Macroh2a1 ENSMUST00000045788 ENSMUSP00000038221 TRANSLATION protein_coding - CCDS49278.1 1 369.0 0.0 7.4 32.8 222.1 0.0 -4,-7 1.0 13 12.0 ALTERNATIVE:1 ENSMUSG00000045410 Akr1e1 ENSMUST00000220936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045410 Akr1e1 ENSMUST00000131982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045410 Akr1e1 ENSMUST00000110691 ENSMUSP00000106319 TRANSLATION protein_coding - - 1 245.0 24.0 7.0 0.0 127.5 0.0 -4,-5 0.0002 3 10.692 MINOR ENSMUSG00000045410 Akr1e1 ENSMUST00000091848 ENSMUSP00000089459 TRANSLATION protein_coding - CCDS26226.1 1 301.0 28.0 8.0 7.3 171.6 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000096099 Vmn1r220 ENSMUST00000227950 ENSMUSP00000153769 TRANSLATION protein_coding - CCDS26335.1 - 298.0 0.0 0.0 0.7 125.8 4.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096099 Vmn1r220 ENSMUST00000228854 ENSMUSP00000154302 TRANSLATION protein_coding - CCDS26335.1 - 298.0 0.0 0.0 0.7 125.8 4.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096099 Vmn1r220 ENSMUST00000227679 ENSMUSP00000154136 TRANSLATION protein_coding - CCDS26335.1 - 298.0 0.0 0.0 0.7 125.8 4.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096099 Vmn1r220 ENSMUST00000228239 ENSMUSP00000154380 TRANSLATION protein_coding - CCDS26335.1 - 298.0 0.0 0.0 0.7 125.8 4.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096099 Vmn1r220 ENSMUST00000226651 ENSMUSP00000154123 TRANSLATION protein_coding - CCDS26335.1 - 298.0 0.0 0.0 0.7 125.8 4.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096099 Vmn1r220 ENSMUST00000072385 ENSMUSP00000072222 TRANSLATION protein_coding - CCDS26335.1 - 298.0 0.0 0.0 0.7 125.8 4.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000021336 Slc17a4 ENSMUST00000021769 ENSMUSP00000021769 TRANSLATION protein_coding - CCDS49221.1 5 492.0 0.0 6.1 5.4 156.7 19.0 -4,-5 1.0 - 13.112 PRINCIPAL:1 ENSMUSG00000021336 Slc17a4 ENSMUST00000225763 - NO_TRANSLATION retained_intron ENSMUSG00000021336 Slc17a4 ENSMUST00000225797 ENSMUSP00000153087 TRANSLATION nonsense_mediated_decay - - - 254.0 0.0 0.6 0.0 44.3 4.0 -4,-5 0.0041 - -2.0 MINOR ENSMUSG00000021336 Slc17a4 ENSMUST00000110407 ENSMUSP00000106037 TRANSLATION protein_coding - - 1 452.0 0.0 5.25 0.0 171.5 18.0 -4,-5 0.027 - 10.302 MINOR ENSMUSG00000021336 Slc17a4 ENSMUST00000224360 - NO_TRANSLATION retained_intron ENSMUSG00000074886 Grk6 ENSMUST00000224118 ENSMUSP00000152968 TRANSLATION protein_coding - - - 576.0 20.0 14.5 24.0 298.4 0.0 -4,-5 0.9646 8 22.0 PRINCIPAL:1 ENSMUSG00000074886 Grk6 ENSMUST00000224653 ENSMUSP00000153623 TRANSLATION protein_coding - - - 557.0 20.0 13.5 2.0 298.4 0.0 -4,-5 0.2226 9 16.174 MINOR ENSMUSG00000074886 Grk6 ENSMUST00000099482 ENSMUSP00000097081 TRANSLATION protein_coding - CCDS36676.1 1 560.0 20.0 14.5 13.6 298.4 0.0 -4,-5 1.0 8 20.192 MINOR ENSMUSG00000074886 Grk6 ENSMUST00000225925 ENSMUSP00000153668 TRANSLATION protein_coding - - - 542.0 15.0 13.5 0.0 254.5 0.0 -4,-5 0.0026 7 10.032 MINOR ENSMUSG00000074886 Grk6 ENSMUST00000224995 ENSMUSP00000153344 TRANSLATION protein_coding - - - 584.0 19.0 14.5 1.1 285.6 0.0 -4,-5 0.1766 10 16.582 MINOR ENSMUSG00000074886 Grk6 ENSMUST00000224532 - NO_TRANSLATION retained_intron ENSMUSG00000074886 Grk6 ENSMUST00000001115 ENSMUSP00000001115 TRANSLATION protein_coding - CCDS49272.1 1 589.0 20.0 14.5 2.2 298.4 0.0 -4,-5 0.4083 10 18.208 MINOR ENSMUSG00000038175 Mylip ENSMUST00000222178 ENSMUSP00000152597 TRANSLATION protein_coding - - 1 380.0 8.0 5.1 6.6 118.8 0.0 -4,-7 0.1152 2 12.25 MINOR ENSMUSG00000038175 Mylip ENSMUST00000038275 ENSMUSP00000047403 TRANSLATION protein_coding - CCDS36648.1 1 445.0 8.0 6.85 21.7 174.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000044566 Cage1 ENSMUST00000110233 ENSMUSP00000105862 TRANSLATION protein_coding - CCDS26460.1 5 849.0 0.0 0.0 0.1 837.3 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000044566 Cage1 ENSMUST00000131066 ENSMUSP00000122393 TRANSLATION protein_coding stop - 1 318.0 0.0 0.0 0.0 434.6 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000044566 Cage1 ENSMUST00000074969 ENSMUSP00000074499 TRANSLATION protein_coding - CCDS26460.1 5 849.0 0.0 0.0 0.1 837.3 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000044566 Cage1 ENSMUST00000089840 ENSMUSP00000087278 TRANSLATION protein_coding - - 1 515.0 0.0 0.0 0.0 657.3 0.0 -4,-5 0.0301 - 0.0 MINOR ENSMUSG00000098905 Zfp953 ENSMUST00000081582 ENSMUSP00000076700 TRANSLATION protein_coding - - 1 301.0 32.0 1.16 0.0 169.4 0.0 -4,-7 0.8014 - 18.0 PRINCIPAL:1 ENSMUSG00000001542 Ell2 ENSMUST00000222194 ENSMUSP00000152557 TRANSLATION protein_coding - - 3 111.0 0.0 0.0 0.0 112.4 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000001542 Ell2 ENSMUST00000220572 ENSMUSP00000152827 TRANSLATION nonsense_mediated_decay - - 5 90.0 0.0 0.0 0.0 56.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000001542 Ell2 ENSMUST00000222564 - NO_TRANSLATION retained_intron ENSMUSG00000001542 Ell2 ENSMUST00000221979 - NO_TRANSLATION retained_intron ENSMUSG00000001542 Ell2 ENSMUST00000222892 ENSMUSP00000152107 TRANSLATION protein_coding start/stop - 3 169.0 0.0 3.1 0.0 162.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000001542 Ell2 ENSMUST00000001583 ENSMUSP00000001583 TRANSLATION protein_coding - CCDS36734.1 1 639.0 0.0 5.975 7.6 482.2 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000001542 Ell2 ENSMUST00000221432 - NO_TRANSLATION retained_intron ENSMUSG00000001542 Ell2 ENSMUST00000223535 ENSMUSP00000152085 TRANSLATION protein_coding start/stop - 3 181.0 0.0 1.0 0.0 201.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000001542 Ell2 ENSMUST00000222853 ENSMUSP00000152427 TRANSLATION protein_coding stop - 5 172.0 0.0 3.2 0.0 201.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000043183 Simc1 ENSMUST00000118072 ENSMUSP00000112376 TRANSLATION protein_coding - - 5 453.0 0.0 0.0 0.7 0.0 0.0 -4,-5 0.6074 2 0.0 ALTERNATIVE:2 ENSMUSG00000043183 Simc1 ENSMUST00000123852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043183 Simc1 ENSMUST00000138869 ENSMUSP00000124474 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 - -2.0 MINOR ENSMUSG00000043183 Simc1 ENSMUST00000150011 - NO_TRANSLATION retained_intron ENSMUSG00000043183 Simc1 ENSMUST00000159721 ENSMUSP00000124921 TRANSLATION protein_coding stop - 2 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0209 - -2.0 MINOR ENSMUSG00000043183 Simc1 ENSMUST00000121401 ENSMUSP00000113676 TRANSLATION protein_coding - CCDS26528.2 5 1354.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5148 9 0.0 PRINCIPAL:3 ENSMUSG00000043183 Simc1 ENSMUST00000126506 - NO_TRANSLATION retained_intron ENSMUSG00000057649 Brd9 ENSMUST00000220488 - NO_TRANSLATION retained_intron ENSMUSG00000057649 Brd9 ENSMUST00000223525 ENSMUSP00000152308 TRANSLATION protein_coding start/stop - 5 370.0 0.0 4.4 0.0 284.0 0.0 -4,-5 0.0191 8 -2.0 MINOR ENSMUSG00000057649 Brd9 ENSMUST00000222399 ENSMUSP00000152390 TRANSLATION protein_coding - - 1 596.0 0.0 3.65 9.9 358.0 0.0 -4,-5 0.8412 10 9.5 ALTERNATIVE:1 ENSMUSG00000057649 Brd9 ENSMUST00000223455 - NO_TRANSLATION retained_intron ENSMUSG00000057649 Brd9 ENSMUST00000099384 ENSMUSP00000096982 TRANSLATION protein_coding - CCDS36728.1 1 597.0 0.0 3.65 9.9 358.0 0.0 -4,-5 1.0 10 9.5 PRINCIPAL:4 ENSMUSG00000057649 Brd9 ENSMUST00000223063 - NO_TRANSLATION retained_intron ENSMUSG00000057649 Brd9 ENSMUST00000222749 ENSMUSP00000152257 TRANSLATION protein_coding stop - 3 210.0 0.0 2.25 0.0 38.4 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000057649 Brd9 ENSMUST00000223446 - NO_TRANSLATION retained_intron ENSMUSG00000057649 Brd9 ENSMUST00000220968 - NO_TRANSLATION retained_intron ENSMUSG00000057649 Brd9 ENSMUST00000222191 - NO_TRANSLATION retained_intron ENSMUSG00000057649 Brd9 ENSMUST00000221324 - NO_TRANSLATION retained_intron ENSMUSG00000057649 Brd9 ENSMUST00000223238 ENSMUSP00000152627 TRANSLATION nonsense_mediated_decay start - 3 52.0 0.0 0.75 0.0 26.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000050345 4930486L24Rik ENSMUST00000091569 ENSMUSP00000089157 TRANSLATION protein_coding - CCDS26583.1 1 333.0 3.0 6.8 18.2 308.7 0.0 1,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000045835 Hdgfl1 ENSMUST00000055915 ENSMUSP00000057557 TRANSLATION protein_coding - CCDS26388.1 - 283.0 0.0 0.6 0.0 39.0 0.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000021360 Gcnt2 ENSMUST00000225759 ENSMUSP00000153207 TRANSLATION protein_coding - - - 356.0 9.0 2.0 0.0 187.2 1.0 -1,-5 0.007 5 9.696 MINOR ENSMUSG00000021360 Gcnt2 ENSMUST00000069958 ENSMUSP00000070942 TRANSLATION protein_coding - CCDS26468.1 1 401.0 10.0 2.75 5.1 193.0 1.0 -1,-5 0.9195 1 16.0 ALTERNATIVE:1 ENSMUSG00000021360 Gcnt2 ENSMUST00000223570 ENSMUSP00000153363 TRANSLATION protein_coding - - - 45.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - 2.184 MINOR ENSMUSG00000021360 Gcnt2 ENSMUST00000067778 ENSMUSP00000066467 TRANSLATION protein_coding - CCDS26469.1 1 401.0 10.0 2.75 0.1 196.3 1.0 -1,-5 0.4598 5 14.0 MINOR ENSMUSG00000021360 Gcnt2 ENSMUST00000110191 ENSMUSP00000105820 TRANSLATION protein_coding - CCDS36637.1 1 401.0 9.0 2.75 5.1 200.0 1.0 -2,-5 1.0 5 15.334 PRINCIPAL:3 ENSMUSG00000021360 Gcnt2 ENSMUST00000225996 - NO_TRANSLATION retained_intron ENSMUSG00000021415 Tex56 ENSMUST00000160905 ENSMUSP00000125206 TRANSLATION nonsense_mediated_decay - CCDS49233.1 1 227.0 0.0 0.0 0.0 287.1 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000021415 Tex56 ENSMUST00000160279 ENSMUSP00000125324 TRANSLATION protein_coding - CCDS49233.1 1 227.0 0.0 0.0 0.0 287.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074849 Spata31d1c ENSMUST00000099427 ENSMUSP00000097024 TRANSLATION protein_coding - CCDS49293.1 1 853.0 0.0 0.0 0.0 498.4 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078995 Zfp456 ENSMUST00000225787 ENSMUSP00000153162 TRANSLATION protein_coding stop - - 51.0 0.0 1.33 0.0 82.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000078995 Zfp456 ENSMUST00000172266 ENSMUSP00000130928 TRANSLATION protein_coding - - 3 114.0 0.0 1.78 0.0 82.2 0.0 -4,-7 0.0 - 4.14 MINOR ENSMUSG00000078995 Zfp456 ENSMUST00000057070 ENSMUSP00000059686 TRANSLATION protein_coding - CCDS36713.1 1 458.0 43.0 2.58 0.0 270.8 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000069267 H3c2 ENSMUST00000091703 ENSMUSP00000089295 TRANSLATION protein_coding - CCDS26365.1 - 136.0 0.0 1.0 31.8 181.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038212 Mfsd14b ENSMUST00000220824 - NO_TRANSLATION retained_intron ENSMUSG00000038212 Mfsd14b ENSMUST00000155487 ENSMUSP00000118180 TRANSLATION protein_coding - CCDS26603.2 1 507.0 0.0 2.042 2.2 109.8 11.0 -4,-6 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000038212 Mfsd14b ENSMUST00000148779 - NO_TRANSLATION retained_intron ENSMUSG00000038212 Mfsd14b ENSMUST00000054730 ENSMUSP00000062566 TRANSLATION protein_coding - CCDS26603.2 5 507.0 0.0 2.042 2.2 109.8 11.0 -4,-6 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000057446 Cts8 ENSMUST00000021891 ENSMUSP00000021891 TRANSLATION protein_coding - CCDS26587.1 1 333.0 4.0 6.4 3.2 301.8 0.0 1,-2 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000097565 Gm26965 ENSMUST00000167914 ENSMUSP00000137830 TRANSLATION nonsense_mediated_decay,RT - - 2 86.0 2.0 1.8 0.0 85.7 0.0 -4,-5 0.7471 - -2.0 PRINCIPAL:1 ENSMUSG00000036658 Or2b6 ENSMUST00000205631 ENSMUSP00000146091 TRANSLATION protein_coding - CCDS26283.1 3 313.0 0.0 1.0 11.4 169.5 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036658 Or2b6 ENSMUST00000043081 ENSMUSP00000043099 TRANSLATION protein_coding - CCDS26283.1 - 313.0 0.0 1.0 11.4 169.5 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041685 Fcho2 ENSMUST00000040340 ENSMUSP00000042959 TRANSLATION protein_coding - CCDS56897.1 1 809.0 0.0 13.66 13.4 297.8 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000041685 Fcho2 ENSMUST00000225840 ENSMUSP00000153040 TRANSLATION protein_coding stop - - 281.0 0.0 7.58 0.0 68.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000041685 Fcho2 ENSMUST00000109403 ENSMUSP00000105030 TRANSLATION protein_coding stop - 5 394.0 0.0 7.58 0.0 68.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000041685 Fcho2 ENSMUST00000224992 ENSMUSP00000153477 TRANSLATION protein_coding - - - 395.0 0.0 7.58 0.0 68.7 0.0 -4,-5 0.0 8 0.0 MINOR ENSMUSG00000041685 Fcho2 ENSMUST00000224231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041685 Fcho2 ENSMUST00000223634 - NO_TRANSLATION retained_intron ENSMUSG00000041685 Fcho2 ENSMUST00000099277 ENSMUSP00000096883 TRANSLATION nonsense_mediated_decay - - 5 356.0 0.0 7.58 0.0 68.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000041685 Fcho2 ENSMUST00000225318 - NO_TRANSLATION retained_intron ENSMUSG00000041685 Fcho2 ENSMUST00000224416 - NO_TRANSLATION retained_intron ENSMUSG00000041685 Fcho2 ENSMUST00000225094 - NO_TRANSLATION retained_intron ENSMUSG00000041685 Fcho2 ENSMUST00000225945 - NO_TRANSLATION retained_intron ENSMUSG00000116057 Vmn1r216 ENSMUST00000080253 ENSMUSP00000079139 TRANSLATION protein_coding - CCDS26331.1 - 298.0 0.0 0.0 0.0 116.2 0.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000021686 Ap3b1 ENSMUST00000231916 ENSMUSP00000155984 TRANSLATION protein_coding start - - 484.0 0.0 0.0 0.0 283.9 0.0 -4,-5 0.0011 6 -2.0 MINOR ENSMUSG00000021686 Ap3b1 ENSMUST00000222383 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021686 Ap3b1 ENSMUST00000022196 ENSMUSP00000022196 TRANSLATION protein_coding - CCDS26693.1 1 1105.0 0.0 6.908 0.0 839.9 0.0 -4,-5 1.0 25 12.0 PRINCIPAL:1 ENSMUSG00000021686 Ap3b1 ENSMUST00000221206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021686 Ap3b1 ENSMUST00000220505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021660 Btf3 ENSMUST00000133826 - NO_TRANSLATION retained_intron ENSMUSG00000021660 Btf3 ENSMUST00000134542 ENSMUSP00000115500 TRANSLATION protein_coding - CCDS49340.1 2 162.0 0.0 2.0 33.0 92.4 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000021660 Btf3 ENSMUST00000152704 ENSMUSP00000118093 TRANSLATION protein_coding - CCDS49340.1 1 162.0 0.0 2.0 33.0 92.4 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000021660 Btf3 ENSMUST00000133461 - NO_TRANSLATION retained_intron ENSMUSG00000021660 Btf3 ENSMUST00000022163 ENSMUSP00000022163 TRANSLATION protein_coding - CCDS26714.1 1 204.0 0.0 2.0 8.0 92.4 0.0 -4,-7 0.3899 8 12.876 MINOR ENSMUSG00000021306 Gpr137b ENSMUST00000222482 - NO_TRANSLATION retained_intron ENSMUSG00000021306 Gpr137b ENSMUST00000221498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021306 Gpr137b ENSMUST00000221340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021306 Gpr137b ENSMUST00000021738 ENSMUSP00000021738 TRANSLATION protein_coding - CCDS26243.1 1 385.0 0.0 0.0 8.2 0.0 8.0 -4,-7 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000021306 Gpr137b ENSMUST00000222958 ENSMUSP00000152888 TRANSLATION nonsense_mediated_decay - - 1 139.0 0.0 0.0 0.0 0.0 4.0 -4,-7 0.0279 - -2.0 MINOR ENSMUSG00000021306 Gpr137b ENSMUST00000220628 ENSMUSP00000152494 TRANSLATION protein_coding - - 1 393.0 0.0 0.0 0.1 0.0 8.0 -4,-7 0.1327 1 0.0 MINOR ENSMUSG00000021306 Gpr137b ENSMUST00000223093 ENSMUSP00000152434 TRANSLATION nonsense_mediated_decay - - 1 393.0 0.0 0.0 0.1 0.0 8.0 -4,-7 0.1327 1 -2.0 MINOR ENSMUSG00000038402 Foxf2 ENSMUST00000042054 ENSMUSP00000046789 TRANSLATION protein_coding - CCDS26424.1 1 446.0 0.0 0.4 0.4 125.3 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000036376 Abt1 ENSMUST00000041782 ENSMUSP00000045888 TRANSLATION protein_coding - CCDS26338.1 1 269.0 0.0 1.33 0.4 0.0 0.0 -4,-5 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000021432 Slc35b3 ENSMUST00000225461 ENSMUSP00000153411 TRANSLATION nonsense_mediated_decay - - - 132.0 0.0 1.732 0.0 53.6 4.0 -4,-2 0.0037 1 -2.0 MINOR ENSMUSG00000021432 Slc35b3 ENSMUST00000224854 - NO_TRANSLATION retained_intron ENSMUSG00000021432 Slc35b3 ENSMUST00000225568 ENSMUSP00000153485 TRANSLATION protein_coding stop - - 232.0 0.0 6.702 0.0 243.9 15.0 -4,-7 0.0034 1 -2.0 MINOR ENSMUSG00000021432 Slc35b3 ENSMUST00000021870 ENSMUSP00000021870 TRANSLATION protein_coding - CCDS49240.1 1 413.0 0.0 8.902 0.1 310.3 20.0 -4,-5 0.2131 3 12.0 MINOR ENSMUSG00000021432 Slc35b3 ENSMUST00000225714 ENSMUSP00000153154 TRANSLATION nonsense_mediated_decay - - - 132.0 0.0 1.732 0.0 53.6 4.0 -4,-2 0.0037 - -2.0 MINOR ENSMUSG00000021432 Slc35b3 ENSMUST00000167513 ENSMUSP00000126016 TRANSLATION protein_coding - CCDS26466.1 1 369.0 0.0 8.902 20.0 310.3 20.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000021432 Slc35b3 ENSMUST00000225331 ENSMUSP00000153151 TRANSLATION protein_coding stop - - 119.0 0.0 2.062 0.0 65.9 4.0 -4,-2 0.0037 1 -2.0 MINOR ENSMUSG00000021432 Slc35b3 ENSMUST00000225432 ENSMUSP00000153046 TRANSLATION protein_coding - CCDS26466.1 - 369.0 0.0 8.902 20.0 310.3 20.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000021432 Slc35b3 ENSMUST00000223619 - NO_TRANSLATION retained_intron ENSMUSG00000021432 Slc35b3 ENSMUST00000224429 ENSMUSP00000153010 TRANSLATION nonsense_mediated_decay - - - 45.0 0.0 0.83 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000021432 Slc35b3 ENSMUST00000225396 ENSMUSP00000153305 TRANSLATION protein_coding start - - 156.0 0.0 4.91 0.0 140.5 11.0 2,-2 0.004 - -2.0 MINOR ENSMUSG00000021432 Slc35b3 ENSMUST00000224645 ENSMUSP00000153644 TRANSLATION protein_coding stop - - 149.0 0.0 4.58 0.0 133.7 10.0 -2,-4 0.0021 - -2.0 MINOR ENSMUSG00000036181 H1f2 ENSMUST00000040914 ENSMUSP00000045816 TRANSLATION protein_coding - CCDS26361.1 - 212.0 0.0 0.6 1.1 81.5 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000021493 Pdlim7 ENSMUST00000153426 ENSMUSP00000118867 TRANSLATION protein_coding stop - 3 58.0 0.0 1.75 0.0 35.9 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000021493 Pdlim7 ENSMUST00000131306 ENSMUSP00000119753 TRANSLATION protein_coding - - 2 219.0 0.0 2.698 0.0 50.8 0.0 -4,-6 0.0 6 0.0 MINOR ENSMUSG00000021493 Pdlim7 ENSMUST00000069929 ENSMUSP00000064219 TRANSLATION protein_coding - CCDS26547.1 1 188.0 0.0 4.198 2.2 50.8 0.0 -4,-6 0.0583 10 2.775 MINOR ENSMUSG00000021493 Pdlim7 ENSMUST00000153230 - NO_TRANSLATION retained_intron ENSMUSG00000021493 Pdlim7 ENSMUST00000128910 - NO_TRANSLATION retained_intron ENSMUSG00000021493 Pdlim7 ENSMUST00000155098 ENSMUSP00000120465 TRANSLATION nonsense_mediated_decay - CCDS49275.1 1 457.0 23.0 5.988 8.2 197.8 0.0 -4,-6 1.0 15 -2.0 MINOR ENSMUSG00000021493 Pdlim7 ENSMUST00000128911 - NO_TRANSLATION retained_intron ENSMUSG00000021493 Pdlim7 ENSMUST00000046246 ENSMUSP00000047173 TRANSLATION protein_coding - CCDS49275.1 1 457.0 23.0 5.988 8.2 197.8 0.0 -4,-6 1.0 15 20.139 PRINCIPAL:1 ENSMUSG00000021493 Pdlim7 ENSMUST00000136583 - NO_TRANSLATION retained_intron ENSMUSG00000021493 Pdlim7 ENSMUST00000144288 ENSMUSP00000121614 TRANSLATION protein_coding stop - 5 124.0 0.0 2.698 0.0 50.8 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000021493 Pdlim7 ENSMUST00000069968 ENSMUSP00000070153 TRANSLATION protein_coding - CCDS49276.1 1 222.0 0.0 4.198 11.1 50.8 0.0 -4,-6 0.7622 13 5.418 MINOR ENSMUSG00000041817 Fam169a ENSMUST00000169863 ENSMUSP00000126209 TRANSLATION protein_coding - CCDS49337.1 1 665.0 0.0 5.75 9.5 0.0 0.0 -4,-5 1.0 9 9.0 PRINCIPAL:1 ENSMUSG00000041817 Fam169a ENSMUST00000042517 ENSMUSP00000043738 TRANSLATION protein_coding - CCDS49337.1 1 665.0 0.0 5.75 9.5 0.0 0.0 -4,-5 1.0 9 9.0 PRINCIPAL:1 ENSMUSG00000034751 Mast4 ENSMUST00000167058 ENSMUSP00000128464 TRANSLATION protein_coding - CCDS49349.1 1 2618.0 18.0 5.155 0.0 680.4 0.0 -4,-5 1.0 33 14.0 PRINCIPAL:2 ENSMUSG00000034751 Mast4 ENSMUST00000194446 ENSMUSP00000141977 TRANSLATION protein_coding - - 5 2431.0 18.0 5.155 0.0 680.4 0.0 -4,-7 0.397 31 14.0 ALTERNATIVE:2 ENSMUSG00000034751 Mast4 ENSMUST00000169605 - NO_TRANSLATION retained_intron ENSMUSG00000034751 Mast4 ENSMUST00000168226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034751 Mast4 ENSMUST00000166867 - NO_TRANSLATION retained_intron ENSMUSG00000034751 Mast4 ENSMUST00000191417 - NO_TRANSLATION retained_intron ENSMUSG00000034751 Mast4 ENSMUST00000164211 - NO_TRANSLATION retained_intron ENSMUSG00000034751 Mast4 ENSMUST00000167462 ENSMUSP00000131910 TRANSLATION protein_coding stop - 5 993.0 18.0 5.155 0.0 680.4 0.0 -4,-6 0.2791 5 -2.0 MINOR ENSMUSG00000034751 Mast4 ENSMUST00000171358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034751 Mast4 ENSMUST00000239261 ENSMUSP00000159269 TRANSLATION protein_coding - - - 2444.0 18.0 5.155 0.0 680.4 0.0 -4,-7 0.397 31 14.0 ALTERNATIVE:2 ENSMUSG00000034751 Mast4 ENSMUST00000187024 - NO_TRANSLATION retained_intron ENSMUSG00000034751 Mast4 ENSMUST00000099202 ENSMUSP00000096808 TRANSLATION protein_coding - - 5 2441.0 18.0 5.155 0.0 684.8 0.0 -4,-7 0.4761 32 14.0 ALTERNATIVE:2 ENSMUSG00000034751 Mast4 ENSMUST00000166336 ENSMUSP00000126516 TRANSLATION protein_coding stop - 3 198.0 0.0 0.0 0.0 212.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034751 Mast4 ENSMUST00000166726 ENSMUSP00000132263 TRANSLATION protein_coding - - 5 1210.0 18.0 5.155 0.0 680.4 0.0 -4,-5 0.3419 7 14.0 ALTERNATIVE:2 ENSMUSG00000034751 Mast4 ENSMUST00000172264 ENSMUSP00000128129 TRANSLATION protein_coding stop - 5 868.0 18.0 5.155 0.0 648.7 0.0 -4,-7 0.1682 5 -2.0 MINOR ENSMUSG00000034751 Mast4 ENSMUST00000211607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034751 Mast4 ENSMUST00000171791 ENSMUSP00000131651 TRANSLATION protein_coding - - 5 2426.0 18.0 5.155 0.0 680.4 0.0 -4,-6 0.3908 31 14.0 ALTERNATIVE:2 ENSMUSG00000034751 Mast4 ENSMUST00000185314 - NO_TRANSLATION retained_intron ENSMUSG00000034751 Mast4 ENSMUST00000164111 ENSMUSP00000126625 TRANSLATION protein_coding - - 2 254.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 2 0.0 MINOR ENSMUSG00000034751 Mast4 ENSMUST00000185947 - NO_TRANSLATION retained_intron ENSMUSG00000046899 Prl7a2 ENSMUST00000006660 ENSMUSP00000006660 TRANSLATION protein_coding - CCDS26404.1 1 253.0 0.0 3.7 0.1 145.9 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021313 Ryr2 ENSMUST00000222386 - NO_TRANSLATION retained_intron ENSMUSG00000021313 Ryr2 ENSMUST00000222113 - NO_TRANSLATION retained_intron ENSMUSG00000021313 Ryr2 ENSMUST00000222788 - NO_TRANSLATION retained_intron ENSMUSG00000021313 Ryr2 ENSMUST00000221527 ENSMUSP00000152510 TRANSLATION protein_coding start/stop - 5 1028.0 4.0 8.52 0.0 447.0 0.0 -4,-2 0.0056 16 -2.0 MINOR ENSMUSG00000021313 Ryr2 ENSMUST00000220597 ENSMUSP00000152051 TRANSLATION protein_coding - - 1 1020.0 0.0 22.4 0.0 854.3 0.0 -4,-5 0.05 17 0.0 MINOR ENSMUSG00000021313 Ryr2 ENSMUST00000221018 - NO_TRANSLATION retained_intron ENSMUSG00000021313 Ryr2 ENSMUST00000220712 ENSMUSP00000152669 TRANSLATION protein_coding start/stop - 5 369.0 0.0 1.8425 0.0 0.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000021313 Ryr2 ENSMUST00000221890 - NO_TRANSLATION retained_intron ENSMUSG00000021313 Ryr2 ENSMUST00000221916 - NO_TRANSLATION retained_intron ENSMUSG00000021313 Ryr2 ENSMUST00000221341 - NO_TRANSLATION retained_intron ENSMUSG00000021313 Ryr2 ENSMUST00000021750 ENSMUSP00000021750 TRANSLATION protein_coding - CCDS49206.1 1 4966.0 4.0 43.495 3.0 2011.5 0.0 -4,-5 1.0 99 17.0 PRINCIPAL:1 ENSMUSG00000021313 Ryr2 ENSMUST00000221609 - NO_TRANSLATION retained_intron ENSMUSG00000021313 Ryr2 ENSMUST00000221941 - NO_TRANSLATION retained_intron ENSMUSG00000062822 4833420G17Rik ENSMUST00000026519 ENSMUSP00000026519 TRANSLATION protein_coding - CCDS49373.1 1 639.0 0.0 0.0 10.3 310.4 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000062822 4833420G17Rik ENSMUST00000224312 ENSMUSP00000153150 TRANSLATION protein_coding - CCDS49373.1 - 639.0 0.0 0.0 10.3 310.4 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000062822 4833420G17Rik ENSMUST00000224081 ENSMUSP00000153273 TRANSLATION protein_coding stop - - 200.0 0.0 0.0 0.0 197.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062822 4833420G17Rik ENSMUST00000225186 ENSMUSP00000153079 TRANSLATION protein_coding - CCDS49373.1 - 639.0 0.0 0.0 10.3 310.4 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000062822 4833420G17Rik ENSMUST00000225292 - NO_TRANSLATION retained_intron ENSMUSG00000062822 4833420G17Rik ENSMUST00000225726 ENSMUSP00000153338 TRANSLATION nonsense_mediated_decay - - - 390.0 0.0 0.0 0.0 197.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000037989 Wnk2 ENSMUST00000159196 ENSMUSP00000124598 TRANSLATION protein_coding start - 1 708.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0109 13 -2.0 MINOR ENSMUSG00000037989 Wnk2 ENSMUST00000159633 ENSMUSP00000125522 TRANSLATION nonsense_mediated_decay start - 3 138.0 0.0 2.05 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000037989 Wnk2 ENSMUST00000049265 ENSMUSP00000049327 TRANSLATION protein_coding - - 5 2101.0 0.0 7.85 0.0 271.6 0.0 -4,-5 0.5323 28 8.0 ALTERNATIVE:2 ENSMUSG00000037989 Wnk2 ENSMUST00000160087 ENSMUSP00000124614 TRANSLATION protein_coding start - 1 1332.0 0.0 2.05 0.0 0.0 0.0 -4,-2 0.0334 20 -2.0 MINOR ENSMUSG00000037989 Wnk2 ENSMUST00000162581 ENSMUSP00000125448 TRANSLATION protein_coding - - 5 2065.0 0.0 7.85 0.0 271.6 0.0 -4,-5 0.4654 25 8.0 ALTERNATIVE:2 ENSMUSG00000037989 Wnk2 ENSMUST00000162403 ENSMUSP00000125539 TRANSLATION protein_coding - - 5 1991.0 0.0 7.85 0.0 271.6 0.0 -4,-5 0.4454 28 8.0 ALTERNATIVE:2 ENSMUSG00000037989 Wnk2 ENSMUST00000159559 ENSMUSP00000123915 TRANSLATION protein_coding - - 5 2137.0 0.0 7.85 0.0 271.6 0.0 -4,-5 1.0 28 8.0 PRINCIPAL:4 ENSMUSG00000037989 Wnk2 ENSMUST00000110097 ENSMUSP00000105724 TRANSLATION protein_coding - CCDS70455.1 5 2149.0 0.0 7.85 0.1 271.6 0.0 -4,-5 0.9993 28 8.0 ALTERNATIVE:2 ENSMUSG00000037989 Wnk2 ENSMUST00000110096 ENSMUSP00000105723 TRANSLATION protein_coding - - 5 2092.0 0.0 7.85 0.0 271.6 0.0 -4,-5 0.5171 28 8.0 ALTERNATIVE:2 ENSMUSG00000037989 Wnk2 ENSMUST00000091623 ENSMUSP00000089212 TRANSLATION protein_coding - CCDS70454.1 5 2213.0 0.0 7.85 0.1 271.6 0.0 -4,-5 0.8463 28 8.0 ALTERNATIVE:2 ENSMUSG00000021367 Edn1 ENSMUST00000021796 ENSMUSP00000021796 TRANSLATION protein_coding - CCDS26474.1 1 202.0 0.0 0.6 8.3 0.0 0.0 0,-3 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000052293 Taf9 ENSMUST00000185767 ENSMUSP00000140423 TRANSLATION protein_coding stop - 2 155.0 0.0 1.0 0.0 173.9 0.0 -4,-5 0.0625 - -2.0 MINOR ENSMUSG00000052293 Taf9 ENSMUST00000187792 ENSMUSP00000140051 TRANSLATION protein_coding stop - 2 170.0 0.0 1.0 0.0 173.9 0.0 -4,-5 0.0625 - -2.0 MINOR ENSMUSG00000052293 Taf9 ENSMUST00000190165 ENSMUSP00000139407 TRANSLATION protein_coding stop - 2 181.0 0.0 1.0 0.0 173.9 0.0 -4,-5 0.0643 - -2.0 MINOR ENSMUSG00000052293 Taf9 ENSMUST00000167256 ENSMUSP00000132143 TRANSLATION protein_coding - CCDS26735.1 2 264.0 0.0 1.0 1.2 173.9 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000052293 Taf9 ENSMUST00000190594 ENSMUSP00000140244 TRANSLATION protein_coding - CCDS26735.1 1 264.0 0.0 1.0 1.2 173.9 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000021621 Zcchc9 ENSMUST00000022121 ENSMUSP00000022121 TRANSLATION protein_coding - CCDS36742.1 1 271.0 16.0 0.9 16.6 45.1 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000021621 Zcchc9 ENSMUST00000178084 - NO_TRANSLATION retained_intron ENSMUSG00000021621 Zcchc9 ENSMUST00000179368 - NO_TRANSLATION retained_intron ENSMUSG00000021621 Zcchc9 ENSMUST00000070886 ENSMUSP00000065158 TRANSLATION protein_coding start - 5 108.0 8.0 0.4 0.0 27.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021621 Zcchc9 ENSMUST00000178637 - NO_TRANSLATION retained_intron ENSMUSG00000021596 Mctp1 ENSMUST00000126960 ENSMUSP00000120673 TRANSLATION protein_coding - - 1 319.0 16.0 3.496 0.0 149.9 0.0 -4,-5 0.0009 5 2.664 MINOR ENSMUSG00000021596 Mctp1 ENSMUST00000122843 - NO_TRANSLATION retained_intron ENSMUSG00000021596 Mctp1 ENSMUST00000149028 - NO_TRANSLATION retained_intron ENSMUSG00000021596 Mctp1 ENSMUST00000137052 - NO_TRANSLATION retained_intron ENSMUSG00000021596 Mctp1 ENSMUST00000109589 ENSMUSP00000105218 TRANSLATION protein_coding - - 1 187.0 6.0 2.43 1.1 76.0 0.0 -4,-5 0.0578 1 0.711 MINOR ENSMUSG00000021596 Mctp1 ENSMUST00000155275 - NO_TRANSLATION retained_intron ENSMUSG00000021596 Mctp1 ENSMUST00000109583 ENSMUSP00000105212 TRANSLATION protein_coding - CCDS26656.1 5 694.0 22.0 7.73 2.9 239.5 4.0 -4,-7 0.7926 8 14.462 ALTERNATIVE:2 ENSMUSG00000021596 Mctp1 ENSMUST00000125209 ENSMUSP00000118958 TRANSLATION protein_coding - - 1 951.0 22.0 7.93 3.2 239.5 4.0 -4,-7 1.0 14 15.0 PRINCIPAL:3 ENSMUSG00000114559 Gm47429 ENSMUST00000225905 ENSMUSP00000153091 TRANSLATION protein_coding - - - 80.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.6805 - 6.0 PRINCIPAL:1 ENSMUSG00000021710 Nln ENSMUST00000225478 - NO_TRANSLATION retained_intron ENSMUSG00000021710 Nln ENSMUST00000225324 ENSMUSP00000153299 TRANSLATION protein_coding start/stop - - 151.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021710 Nln ENSMUST00000225704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021710 Nln ENSMUST00000224475 - NO_TRANSLATION retained_intron ENSMUSG00000021710 Nln ENSMUST00000109315 ENSMUSP00000104938 TRANSLATION protein_coding - CCDS36772.1 1 704.0 4.0 12.0 14.5 520.5 0.0 -3,1 1.0 23 20.0 PRINCIPAL:1 ENSMUSG00000021710 Nln ENSMUST00000224945 ENSMUSP00000153227 TRANSLATION protein_coding - - - 683.0 4.0 11.0 0.0 472.8 0.0 -3,1 0.0346 20 11.14 MINOR ENSMUSG00000021710 Nln ENSMUST00000224086 - NO_TRANSLATION retained_intron ENSMUSG00000021710 Nln ENSMUST00000224058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042348 Arl15 ENSMUST00000091201 ENSMUSP00000088740 TRANSLATION protein_coding - CCDS36785.1 1 204.0 14.0 3.75 14.4 121.4 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000042348 Arl15 ENSMUST00000224068 ENSMUSP00000153127 TRANSLATION protein_coding - - - 184.0 14.0 3.0 0.0 78.5 0.0 -4,-6 0.0009 2 13.926 MINOR ENSMUSG00000042348 Arl15 ENSMUST00000224858 ENSMUSP00000153570 TRANSLATION nonsense_mediated_decay - - - 56.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000078942 Naip6 ENSMUST00000118574 ENSMUSP00000112867 TRANSLATION protein_coding - CCDS26728.1 1 1403.0 7.0 9.1 2.1 313.7 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000078942 Naip6 ENSMUST00000042220 ENSMUSP00000041766 TRANSLATION protein_coding - CCDS26728.1 1 1403.0 7.0 9.1 2.1 313.7 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000076750 Trgv3 ENSMUST00000198663 ENSMUSP00000142927 TRANSLATION TR_V_gene stop - - 117.0 0.0 0.75 0.0 59.0 0.0 1,-3 0.8299 - -2.0 PRINCIPAL:1 ENSMUSG00000048978 Nrsn1 ENSMUST00000226054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048978 Nrsn1 ENSMUST00000167305 ENSMUSP00000128979 TRANSLATION protein_coding - CCDS26387.1 1 196.0 0.0 1.0 33.2 170.5 2.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000048978 Nrsn1 ENSMUST00000156448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048978 Nrsn1 ENSMUST00000126348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048978 Nrsn1 ENSMUST00000057866 ENSMUSP00000055048 TRANSLATION protein_coding - CCDS26387.1 1 196.0 0.0 1.0 33.2 170.5 2.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021327 Zkscan3 ENSMUST00000223831 ENSMUSP00000153241 TRANSLATION protein_coding - - - 386.0 28.0 0.8 0.0 203.2 0.0 -4,-5 0.0599 4 8.04 MINOR ENSMUSG00000021327 Zkscan3 ENSMUST00000116433 ENSMUSP00000112134 TRANSLATION protein_coding - - 1 298.0 0.0 1.55 0.0 167.3 0.0 -4,-5 0.0018 4 3.96 MINOR ENSMUSG00000021327 Zkscan3 ENSMUST00000116434 ENSMUSP00000112135 TRANSLATION protein_coding - CCDS26274.1 1 553.0 28.0 2.35 0.4 346.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000021327 Zkscan3 ENSMUST00000117721 ENSMUSP00000112862 TRANSLATION protein_coding - - 1 257.0 0.0 1.55 0.0 170.9 0.0 -4,-5 0.0 4 3.96 MINOR ENSMUSG00000021327 Zkscan3 ENSMUST00000145631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021327 Zkscan3 ENSMUST00000151467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021327 Zkscan3 ENSMUST00000224820 ENSMUSP00000153231 TRANSLATION protein_coding - - - 281.0 0.0 0.8 0.0 141.6 0.0 -4,-5 0.0 4 2.04 MINOR ENSMUSG00000021327 Zkscan3 ENSMUST00000070785 ENSMUSP00000068424 TRANSLATION protein_coding - CCDS26274.1 1 553.0 28.0 2.35 0.4 346.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000100210 H3c7 ENSMUST00000075558 ENSMUSP00000074994 TRANSLATION protein_coding - CCDS26344.1 - 136.0 0.0 1.0 31.8 181.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000015672 Mrpl32 ENSMUST00000220621 ENSMUSP00000152345 TRANSLATION protein_coding - CCDS26249.1 1 187.0 3.0 1.8 8.0 0.0 0.0 0,1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000015672 Mrpl32 ENSMUST00000015816 ENSMUSP00000015816 TRANSLATION nonsense_mediated_decay start - 3 39.0 0.0 0.0 0.0 0.0 0.0 0,1 0.0275 - -2.0 MINOR ENSMUSG00000015672 Mrpl32 ENSMUST00000223530 - NO_TRANSLATION retained_intron ENSMUSG00000015672 Mrpl32 ENSMUST00000221699 ENSMUSP00000152859 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.056 - -2.0 MINOR ENSMUSG00000042379 Esm1 ENSMUST00000038144 ENSMUSP00000040187 TRANSLATION protein_coding - CCDS26784.1 1 184.0 0.0 2.0 16.2 34.2 0.0 3,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000062727 H2bc12 ENSMUST00000110455 ENSMUSP00000106085 TRANSLATION protein_coding - CCDS26305.1 - 126.0 0.0 1.0 12.5 92.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060738 Prl7c1 ENSMUST00000072943 ENSMUSP00000072712 TRANSLATION protein_coding - CCDS26406.1 1 251.0 0.0 4.3 0.1 194.7 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021604 Irx4 ENSMUST00000176684 ENSMUSP00000134738 TRANSLATION protein_coding - CCDS26629.1 5 515.0 0.0 1.0 2.7 56.4 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000021604 Irx4 ENSMUST00000022095 ENSMUSP00000022095 TRANSLATION protein_coding - CCDS26629.1 1 515.0 0.0 1.0 2.7 56.4 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000035248 Tut7 ENSMUST00000225179 ENSMUSP00000153353 TRANSLATION protein_coding stop - - 149.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000035248 Tut7 ENSMUST00000224845 - NO_TRANSLATION retained_intron ENSMUSG00000035248 Tut7 ENSMUST00000225607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035248 Tut7 ENSMUST00000224480 ENSMUSP00000153376 TRANSLATION protein_coding start - - 1089.0 15.0 14.02 0.0 314.6 0.0 -4,-5 0.1862 18 -2.0 MINOR ENSMUSG00000035248 Tut7 ENSMUST00000071703 ENSMUSP00000071623 TRANSLATION protein_coding - CCDS36689.1 1 1474.0 15.0 18.02 0.0 314.6 0.0 -4,-5 1.0 27 18.0 PRINCIPAL:1 ENSMUSG00000035248 Tut7 ENSMUST00000225944 - NO_TRANSLATION retained_intron ENSMUSG00000035248 Tut7 ENSMUST00000224320 - NO_TRANSLATION retained_intron ENSMUSG00000035248 Tut7 ENSMUST00000225987 ENSMUSP00000153202 TRANSLATION protein_coding stop - - 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000035248 Tut7 ENSMUST00000225241 ENSMUSP00000153412 TRANSLATION nonsense_mediated_decay start - - 148.0 1.0 2.5 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000035248 Tut7 ENSMUST00000225576 ENSMUSP00000153310 TRANSLATION protein_coding - - - 210.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 5 0.0 MINOR ENSMUSG00000037933 Bicd2 ENSMUST00000220723 ENSMUSP00000152090 TRANSLATION protein_coding start - 5 87.0 0.0 1.0 0.0 56.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037933 Bicd2 ENSMUST00000110085 ENSMUSP00000105712 TRANSLATION protein_coding - CCDS36656.1 1 820.0 0.0 3.83 12.5 1224.1 0.0 -4,-5 0.937 17 11.708 ALTERNATIVE:1 ENSMUSG00000037933 Bicd2 ENSMUST00000048544 ENSMUSP00000039394 TRANSLATION protein_coding - CCDS36657.1 1 851.0 0.0 3.83 13.4 1224.1 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:4 ENSMUSG00000037933 Bicd2 ENSMUST00000110084 ENSMUSP00000105711 TRANSLATION protein_coding - CCDS49261.1 1 746.0 0.0 2.83 0.0 1224.1 0.0 -4,-5 0.159 15 6.002 MINOR ENSMUSG00000021711 Trappc13 ENSMUST00000144060 ENSMUSP00000114406 TRANSLATION protein_coding - CCDS49351.1 1 412.0 0.0 0.0 27.2 280.1 0.0 -4,-5 0.9183 5 5.588 ALTERNATIVE:1 ENSMUSG00000021711 Trappc13 ENSMUST00000141557 ENSMUSP00000118316 TRANSLATION protein_coding - CCDS49352.1 1 417.0 0.0 0.0 30.2 285.1 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:4 ENSMUSG00000021711 Trappc13 ENSMUST00000179891 ENSMUSP00000136986 TRANSLATION protein_coding - - 5 418.0 0.0 0.0 27.2 282.1 0.0 -4,-5 0.814 5 5.588 ALTERNATIVE:1 ENSMUSG00000021711 Trappc13 ENSMUST00000022224 ENSMUSP00000022224 TRANSLATION protein_coding - CCDS49353.1 1 418.0 0.0 0.0 27.2 285.1 0.0 -4,-5 0.9921 5 5.588 ALTERNATIVE:1 ENSMUSG00000021711 Trappc13 ENSMUST00000142745 - NO_TRANSLATION retained_intron ENSMUSG00000091311 Spata31d1b ENSMUST00000165133 ENSMUSP00000130813 TRANSLATION protein_coding - CCDS49285.1 1 1361.0 0.0 0.0 0.0 391.5 0.0 -4,-7 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000046169 Adamts6 ENSMUST00000224504 ENSMUSP00000153194 TRANSLATION nonsense_mediated_decay start - - 96.0 1.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046169 Adamts6 ENSMUST00000224784 ENSMUSP00000153665 TRANSLATION nonsense_mediated_decay - - - 468.0 6.0 3.193 0.0 215.9 0.0 0,-3 0.0008 - -2.0 MINOR ENSMUSG00000046169 Adamts6 ENSMUST00000223562 ENSMUSP00000153504 TRANSLATION nonsense_mediated_decay - - - 468.0 6.0 3.193 0.0 215.9 0.0 0,-3 0.0008 - -2.0 MINOR ENSMUSG00000046169 Adamts6 ENSMUST00000224303 ENSMUSP00000153431 TRANSLATION nonsense_mediated_decay - - - 292.0 1.0 0.5 1.5 139.0 0.0 0,-3 0.049 - -2.0 MINOR ENSMUSG00000046169 Adamts6 ENSMUST00000224742 ENSMUSP00000152936 TRANSLATION nonsense_mediated_decay - - - 292.0 1.0 0.5 1.5 139.0 0.0 0,-3 0.049 - -2.0 MINOR ENSMUSG00000046169 Adamts6 ENSMUST00000065766 ENSMUSP00000064570 TRANSLATION protein_coding - CCDS36773.1 5 1117.0 11.0 8.433 23.7 500.6 0.0 0,-3 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000046169 Adamts6 ENSMUST00000224208 ENSMUSP00000153359 TRANSLATION protein_coding - CCDS36773.1 - 1117.0 11.0 8.433 23.7 500.6 0.0 0,-3 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000036006 Ripor2 ENSMUST00000038477 ENSMUSP00000043663 TRANSLATION protein_coding - CCDS36623.1 1 672.0 0.0 0.0 0.0 569.8 0.0 -4,-1 0.2258 8 2.0 ALTERNATIVE:2 ENSMUSG00000036006 Ripor2 ENSMUST00000058009 ENSMUSP00000051342 TRANSLATION protein_coding - - 2 389.0 0.0 0.0 0.0 568.9 0.0 -4,-1 0.0529 6 1.334 MINOR ENSMUSG00000036006 Ripor2 ENSMUST00000175986 - NO_TRANSLATION retained_intron ENSMUSG00000036006 Ripor2 ENSMUST00000238974 ENSMUSP00000159186 TRANSLATION protein_coding - - - 639.0 0.0 0.0 1.9 568.8 0.0 -4,0 0.6009 8 2.474 ALTERNATIVE:2 ENSMUSG00000036006 Ripor2 ENSMUST00000110383 ENSMUSP00000106012 TRANSLATION protein_coding - CCDS70438.1 1 1053.0 0.0 0.0 0.8 569.8 0.0 -4,-1 0.4712 14 2.0 ALTERNATIVE:2 ENSMUSG00000036006 Ripor2 ENSMUST00000177298 - NO_TRANSLATION retained_intron ENSMUSG00000036006 Ripor2 ENSMUST00000176303 - NO_TRANSLATION retained_intron ENSMUSG00000036006 Ripor2 ENSMUST00000110384 ENSMUSP00000106013 TRANSLATION protein_coding - CCDS36622.1 1 1078.0 0.0 0.0 0.1 569.8 0.0 -4,-1 0.3971 15 2.0 ALTERNATIVE:2 ENSMUSG00000036006 Ripor2 ENSMUST00000091694 ENSMUSP00000089286 TRANSLATION protein_coding - CCDS26377.2 1 633.0 0.0 0.0 2.9 568.8 0.0 -4,-5 1.0 8 3.0 PRINCIPAL:2 ENSMUSG00000036006 Ripor2 ENSMUST00000138547 - NO_TRANSLATION retained_intron ENSMUSG00000036006 Ripor2 ENSMUST00000177174 - NO_TRANSLATION retained_intron ENSMUSG00000036006 Ripor2 ENSMUST00000134370 - NO_TRANSLATION retained_intron ENSMUSG00000036006 Ripor2 ENSMUST00000132689 ENSMUSP00000115689 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036006 Ripor2 ENSMUST00000177489 - NO_TRANSLATION retained_intron ENSMUSG00000041773 Enc1 ENSMUST00000041623 ENSMUSP00000038783 TRANSLATION protein_coding - CCDS26710.1 1 589.0 0.0 0.5 36.9 348.9 0.0 -4,-2 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000076752 Trgc2 ENSMUST00000103561 ENSMUSP00000100340 TRANSLATION TR_C_gene start - - 167.0 0.0 2.33 0.0 38.9 0.0 -4,-5 0.7341 - -2.0 PRINCIPAL:1 ENSMUSG00000057726 Serpinb9g ENSMUST00000081927 ENSMUSP00000080597 TRANSLATION protein_coding - CCDS26438.1 1 377.0 0.0 5.0 12.5 419.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021585 Cast ENSMUST00000221873 - NO_TRANSLATION retained_intron ENSMUSG00000021585 Cast ENSMUST00000223309 ENSMUSP00000152657 TRANSLATION protein_coding - - 1 431.0 0.0 0.8 0.0 286.1 0.0 -4,-5 0.0 17 3.966 MINOR ENSMUSG00000021585 Cast ENSMUST00000222588 ENSMUSP00000152306 TRANSLATION protein_coding - - 1 686.0 0.0 0.71 0.0 392.0 0.0 -4,-5 0.2186 27 9.522 MINOR ENSMUSG00000021585 Cast ENSMUST00000222373 - NO_TRANSLATION retained_intron ENSMUSG00000021585 Cast ENSMUST00000231578 ENSMUSP00000155983 TRANSLATION protein_coding stop - - 520.0 0.0 0.39 0.0 201.5 0.0 -4,-2 0.0028 21 -2.0 MINOR ENSMUSG00000021585 Cast ENSMUST00000223126 ENSMUSP00000152550 TRANSLATION protein_coding - - 1 674.0 0.0 1.21 0.0 389.1 0.0 -4,-5 0.6227 25 11.826 PRINCIPAL:1 ENSMUSG00000021585 Cast ENSMUST00000220738 ENSMUSP00000152504 TRANSLATION protein_coding - - 1 445.0 0.0 0.8 0.0 287.7 0.0 -4,-5 0.0 17 3.966 MINOR ENSMUSG00000021585 Cast ENSMUST00000223206 ENSMUSP00000152174 TRANSLATION protein_coding - - 5 788.0 0.0 0.71 0.0 390.8 0.0 -4,-2 0.106 29 9.45 MINOR ENSMUSG00000021585 Cast ENSMUST00000221208 - NO_TRANSLATION retained_intron ENSMUSG00000021585 Cast ENSMUST00000065629 ENSMUSP00000065275 TRANSLATION protein_coding - CCDS26648.1 1 754.0 0.0 0.71 0.0 390.8 0.0 -4,-5 0.3154 29 9.45 MINOR ENSMUSG00000021585 Cast ENSMUST00000220868 - NO_TRANSLATION retained_intron ENSMUSG00000021585 Cast ENSMUST00000223123 - NO_TRANSLATION retained_intron ENSMUSG00000021585 Cast ENSMUST00000223033 ENSMUSP00000152118 TRANSLATION protein_coding - - 1 704.0 0.0 0.71 0.0 391.9 0.0 -4,-5 0.1177 27 9.516 MINOR ENSMUSG00000038991 Txndc5 ENSMUST00000035988 ENSMUSP00000041839 TRANSLATION protein_coding - CCDS26463.1 1 417.0 12.0 9.45 0.1 291.9 0.0 3,-1 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000038991 Txndc5 ENSMUST00000160653 ENSMUSP00000124401 TRANSLATION protein_coding - CCDS79179.1 1 344.0 12.0 8.85 0.0 270.7 0.0 -4,-5 0.0455 14 15.528 MINOR ENSMUSG00000038991 Txndc5 ENSMUST00000160046 - NO_TRANSLATION retained_intron ENSMUSG00000038991 Txndc5 ENSMUST00000162075 ENSMUSP00000124516 TRANSLATION protein_coding - CCDS79178.1 1 323.0 8.0 8.1 13.8 244.0 0.0 -4,-5 0.9834 13 13.762 MINOR ENSMUSG00000045022 H2bl1 ENSMUST00000054425 ENSMUSP00000053046 TRANSLATION protein_coding - CCDS49342.1 - 123.0 0.0 1.0 5.4 78.5 0.0 -4,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000044231 Nhlrc1 ENSMUST00000052747 ENSMUSP00000054990 TRANSLATION protein_coding - CCDS26487.1 - 401.0 8.0 0.16 6.6 30.0 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000058331 Zfp85 ENSMUST00000091520 ENSMUSP00000089105 TRANSLATION nonsense_mediated_decay - - 2 48.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058331 Zfp85 ENSMUST00000144183 ENSMUSP00000121202 TRANSLATION protein_coding - CCDS36717.1 1 473.0 56.0 1.5 0.0 357.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000069265 H3c1 ENSMUST00000091701 ENSMUSP00000089293 TRANSLATION protein_coding - CCDS26368.1 - 136.0 0.0 1.0 20.2 183.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038246 Fam50b ENSMUST00000221037 ENSMUSP00000152187 TRANSLATION protein_coding - CCDS49232.1 1 334.0 0.0 0.0 11.4 282.2 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000038246 Fam50b ENSMUST00000039605 ENSMUSP00000046980 TRANSLATION protein_coding - CCDS49232.1 1 334.0 0.0 0.0 11.4 282.2 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000033499 Larp4b ENSMUST00000188211 ENSMUSP00000140993 TRANSLATION protein_coding - CCDS36588.1 1 741.0 0.0 4.57 6.3 52.9 0.0 -4,-5 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000033499 Larp4b ENSMUST00000188939 ENSMUSP00000139578 TRANSLATION protein_coding - - 1 663.0 0.0 4.57 0.0 52.9 0.0 -4,-5 0.0328 13 12.0 MINOR ENSMUSG00000033499 Larp4b ENSMUST00000188523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033499 Larp4b ENSMUST00000091829 ENSMUSP00000089437 TRANSLATION protein_coding - CCDS79162.1 1 657.0 0.0 4.57 1.3 52.9 0.0 -4,-5 0.3856 16 12.114 MINOR ENSMUSG00000033499 Larp4b ENSMUST00000189330 - NO_TRANSLATION retained_intron ENSMUSG00000033499 Larp4b ENSMUST00000190041 ENSMUSP00000139927 TRANSLATION protein_coding stop - 3 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033499 Larp4b ENSMUST00000190331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000706 Btn1a1 ENSMUST00000110434 ENSMUSP00000106064 TRANSLATION protein_coding - - 1 179.0 0.0 1.0 0.0 52.7 0.0 3,-1 0.0 - 0.474 MINOR ENSMUSG00000000706 Btn1a1 ENSMUST00000041674 ENSMUSP00000041013 TRANSLATION protein_coding - CCDS26339.1 1 524.0 0.0 3.762 5.6 232.5 0.0 3,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000000706 Btn1a1 ENSMUST00000225831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021614 Vcan ENSMUST00000159910 ENSMUSP00000125446 TRANSLATION protein_coding - CCDS49323.1 5 2394.0 21.0 9.62 0.0 445.3 0.0 1,-3 0.3981 22 17.88 MINOR ENSMUSG00000021614 Vcan ENSMUST00000109546 ENSMUSP00000105173 TRANSLATION protein_coding - CCDS36740.1 1 3354.0 21.0 9.62 0.0 445.3 0.0 1,-3 0.3981 26 17.88 MINOR ENSMUSG00000021614 Vcan ENSMUST00000109544 ENSMUSP00000105171 TRANSLATION protein_coding - CCDS49324.1 5 1615.0 21.0 9.62 0.1 447.3 0.0 1,-3 0.4736 20 18.0 MINOR ENSMUSG00000021614 Vcan ENSMUST00000159285 ENSMUSP00000125674 TRANSLATION protein_coding start/stop - 5 98.0 13.0 2.564 0.0 43.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000021614 Vcan ENSMUST00000162715 ENSMUSP00000125521 TRANSLATION protein_coding stop - 3 100.0 0.0 0.55 0.0 29.7 0.0 1,-3 0.0008 2 -2.0 MINOR ENSMUSG00000021614 Vcan ENSMUST00000159337 ENSMUSP00000125432 TRANSLATION protein_coding - CCDS49321.1 1 368.0 0.0 3.79 0.0 284.9 0.0 1,-3 0.025 9 0.0 MINOR ENSMUSG00000021614 Vcan ENSMUST00000160740 ENSMUSP00000125694 TRANSLATION protein_coding start - 2 141.0 12.0 2.33 0.0 63.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021614 Vcan ENSMUST00000109543 ENSMUSP00000105170 TRANSLATION protein_coding - CCDS49322.1 1 655.0 21.0 9.62 5.3 447.3 0.0 1,-3 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000021614 Vcan ENSMUST00000160029 - NO_TRANSLATION retained_intron ENSMUSG00000014850 Msh3 ENSMUST00000187831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014850 Msh3 ENSMUST00000190393 ENSMUSP00000141163 TRANSLATION nonsense_mediated_decay - - 1 360.0 0.0 1.4 0.0 39.6 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000014850 Msh3 ENSMUST00000191242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014850 Msh3 ENSMUST00000190761 ENSMUSP00000140402 TRANSLATION protein_coding start - 5 129.0 0.0 2.58 0.0 122.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000014850 Msh3 ENSMUST00000191509 ENSMUSP00000141158 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000014850 Msh3 ENSMUST00000185852 ENSMUSP00000140002 TRANSLATION protein_coding - CCDS49326.1 1 1095.0 11.0 18.81 0.0 590.0 0.0 -4,-1 1.0 14 14.0 PRINCIPAL:4 ENSMUSG00000014850 Msh3 ENSMUST00000189376 - NO_TRANSLATION retained_intron ENSMUSG00000014850 Msh3 ENSMUST00000187424 ENSMUSP00000139622 TRANSLATION protein_coding - - 2 167.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 2 0.0 MINOR ENSMUSG00000014850 Msh3 ENSMUST00000186878 - NO_TRANSLATION retained_intron ENSMUSG00000014850 Msh3 ENSMUST00000191550 ENSMUSP00000140659 TRANSLATION nonsense_mediated_decay - - 1 159.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000014850 Msh3 ENSMUST00000191304 - NO_TRANSLATION retained_intron ENSMUSG00000014850 Msh3 ENSMUST00000186392 - NO_TRANSLATION retained_intron ENSMUSG00000014850 Msh3 ENSMUST00000190462 - NO_TRANSLATION retained_intron ENSMUSG00000014850 Msh3 ENSMUST00000022220 ENSMUSP00000022220 TRANSLATION protein_coding - CCDS79222.1 1 1094.0 11.0 18.81 0.0 590.0 0.0 -4,-1 0.9972 14 14.0 ALTERNATIVE:2 ENSMUSG00000014850 Msh3 ENSMUST00000187874 ENSMUSP00000139620 TRANSLATION nonsense_mediated_decay - - 5 101.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0006 1 -2.0 MINOR ENSMUSG00000061474 Mrps36 ENSMUST00000078573 ENSMUSP00000104954 TRANSLATION protein_coding - CCDS49347.1 1 100.0 0.0 0.5 11.8 26.9 0.0 -4,-2 0.8921 4 14.79 MINOR ENSMUSG00000061474 Mrps36 ENSMUST00000150113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061474 Mrps36 ENSMUST00000076037 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061474 Mrps36 ENSMUST00000125206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061474 Mrps36 ENSMUST00000132955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061474 Mrps36 ENSMUST00000109333 ENSMUSP00000104957 TRANSLATION protein_coding - CCDS36767.1 1 102.0 0.0 0.5 16.0 27.3 0.0 -4,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000046876 Atxn1 ENSMUST00000180110 ENSMUSP00000137439 TRANSLATION protein_coding - CCDS56877.1 1 799.0 0.0 0.27 0.3 176.7 0.0 -4,-5 0.1903 12 8.382 MINOR ENSMUSG00000046876 Atxn1 ENSMUST00000222610 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046876 Atxn1 ENSMUST00000167708 ENSMUSP00000129890 TRANSLATION protein_coding - CCDS26483.1 1 791.0 0.0 0.6 3.7 182.0 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000046876 Atxn1 ENSMUST00000221082 - NO_TRANSLATION retained_intron ENSMUSG00000046876 Atxn1 ENSMUST00000222943 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046876 Atxn1 ENSMUST00000091628 ENSMUSP00000089217 TRANSLATION protein_coding - CCDS26483.1 1 791.0 0.0 0.6 3.7 182.0 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000033114 Slc35d2 ENSMUST00000223461 ENSMUSP00000152713 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 0.6 0.0 0.0 2.0 -4,-7 0.0003 - -2.0 MINOR ENSMUSG00000033114 Slc35d2 ENSMUST00000222866 ENSMUSP00000152570 TRANSLATION protein_coding stop - 2 124.0 0.0 3.1 0.0 33.3 6.0 -4,-7 0.0036 - -2.0 MINOR ENSMUSG00000033114 Slc35d2 ENSMUST00000220792 ENSMUSP00000152341 TRANSLATION protein_coding - - 1 283.0 0.0 7.13 0.1 67.9 12.0 -4,-7 0.0111 - 9.018 MINOR ENSMUSG00000033114 Slc35d2 ENSMUST00000221572 - NO_TRANSLATION retained_intron ENSMUSG00000033114 Slc35d2 ENSMUST00000099441 ENSMUSP00000097040 TRANSLATION protein_coding - CCDS26595.1 1 326.0 0.0 8.18 0.4 79.6 14.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033114 Slc35d2 ENSMUST00000222692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033114 Slc35d2 ENSMUST00000222794 ENSMUSP00000152555 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 0.6 0.0 0.0 2.0 -4,-7 0.0003 - -2.0 MINOR ENSMUSG00000033114 Slc35d2 ENSMUST00000222168 ENSMUSP00000152615 TRANSLATION protein_coding - - 3 129.0 0.0 1.53 0.0 0.0 4.0 -4,-7 0.0064 - 0.0 MINOR ENSMUSG00000055137 Sugct ENSMUST00000068545 ENSMUSP00000070759 TRANSLATION protein_coding - CCDS26252.1 1 436.0 22.0 11.25 6.7 0.0 0.0 -4,0 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000055137 Sugct ENSMUST00000221138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055137 Sugct ENSMUST00000221467 - NO_TRANSLATION retained_intron ENSMUSG00000055137 Sugct ENSMUST00000221598 ENSMUSP00000152375 TRANSLATION protein_coding stop - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0181 - -2.0 MINOR ENSMUSG00000055137 Sugct ENSMUST00000220514 ENSMUSP00000152307 TRANSLATION protein_coding - - 1 47.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0181 - 0.0 MINOR ENSMUSG00000050919 Zfp366 ENSMUST00000056558 ENSMUSP00000060040 TRANSLATION protein_coding - CCDS26720.1 1 746.0 43.0 2.8 0.0 187.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000054757 Akr1c20 ENSMUST00000221564 ENSMUSP00000152648 TRANSLATION protein_coding start/stop - 3 277.0 46.0 6.75 0.0 138.0 0.0 -4,-5 0.0014 3 -2.0 MINOR ENSMUSG00000054757 Akr1c20 ENSMUST00000080361 ENSMUSP00000079232 TRANSLATION protein_coding - CCDS79161.1 1 323.0 48.0 8.0 8.8 180.4 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000054757 Akr1c20 ENSMUST00000078239 ENSMUSP00000077363 TRANSLATION protein_coding - - 1 262.0 45.0 6.0 0.0 126.0 0.0 -4,-5 0.0014 3 8.736 MINOR ENSMUSG00000014164 Klhl3 ENSMUST00000160860 ENSMUSP00000123701 TRANSLATION protein_coding - - 5 587.0 0.0 12.93 14.5 515.8 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000014164 Klhl3 ENSMUST00000091583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094338 H2bc13 ENSMUST00000091756 ENSMUSP00000089350 TRANSLATION protein_coding - CCDS26287.1 - 126.0 0.0 1.0 12.5 92.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000009470 Tnpo1 ENSMUST00000109399 ENSMUSP00000105026 TRANSLATION protein_coding - CCDS36760.1 1 890.0 0.0 20.58 35.1 105.8 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000009470 Tnpo1 ENSMUST00000224099 - NO_TRANSLATION retained_intron ENSMUSG00000009470 Tnpo1 ENSMUST00000224022 - NO_TRANSLATION retained_intron ENSMUSG00000009470 Tnpo1 ENSMUST00000179271 ENSMUSP00000136496 TRANSLATION protein_coding stop - 5 178.0 0.0 4.75 0.0 59.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000009470 Tnpo1 ENSMUST00000109401 ENSMUSP00000105028 TRANSLATION protein_coding - CCDS26717.2 1 898.0 0.0 20.58 8.6 105.8 0.0 -4,-5 0.6114 18 12.892 MINOR ENSMUSG00000009470 Tnpo1 ENSMUST00000179301 ENSMUSP00000136917 TRANSLATION protein_coding stop - 1 807.0 0.0 18.08 0.0 105.8 0.0 -4,-5 0.0282 15 -2.0 MINOR ENSMUSG00000076431 Sox4 ENSMUST00000067230 ENSMUSP00000100013 TRANSLATION protein_coding - CCDS26411.1 - 440.0 0.0 0.2 0.4 90.1 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000021645 Smn1 ENSMUST00000140745 ENSMUSP00000118509 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021645 Smn1 ENSMUST00000125572 - NO_TRANSLATION retained_intron ENSMUSG00000021645 Smn1 ENSMUST00000022147 ENSMUSP00000022147 TRANSLATION protein_coding - CCDS26725.1 1 288.0 5.0 2.75 2.4 357.2 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000021645 Smn1 ENSMUST00000091321 ENSMUSP00000088871 TRANSLATION protein_coding - - 1 39.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - 0.438 MINOR ENSMUSG00000021645 Smn1 ENSMUST00000147306 - NO_TRANSLATION retained_intron ENSMUSG00000021645 Smn1 ENSMUST00000143937 ENSMUSP00000119381 TRANSLATION protein_coding start/stop - 5 161.0 5.0 1.0 0.0 147.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021645 Smn1 ENSMUST00000135355 - NO_TRANSLATION retained_intron ENSMUSG00000021645 Smn1 ENSMUST00000134514 - NO_TRANSLATION retained_intron ENSMUSG00000021645 Smn1 ENSMUST00000151389 - NO_TRANSLATION retained_intron ENSMUSG00000001504 Irx2 ENSMUST00000074372 ENSMUSP00000073976 TRANSLATION protein_coding - CCDS26628.1 1 474.0 0.0 1.0 8.5 60.7 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000001504 Irx2 ENSMUST00000163393 - NO_TRANSLATION retained_intron ENSMUSG00000001504 Irx2 ENSMUST00000167067 ENSMUSP00000127963 TRANSLATION protein_coding stop - 3 93.0 0.0 1.0 0.0 60.7 0.0 -4,-6 0.0336 - -2.0 MINOR ENSMUSG00000001504 Irx2 ENSMUST00000169028 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001504 Irx2 ENSMUST00000172353 ENSMUSP00000126691 TRANSLATION protein_coding start - 3 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051111 Sv2c ENSMUST00000182180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051111 Sv2c ENSMUST00000182289 ENSMUSP00000138317 TRANSLATION protein_coding - - 1 667.0 0.0 5.16 0.0 101.4 11.0 -4,-5 0.0239 4 9.684 MINOR ENSMUSG00000051111 Sv2c ENSMUST00000220740 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051111 Sv2c ENSMUST00000161263 ENSMUSP00000124473 TRANSLATION protein_coding - CCDS49333.1 5 727.0 0.0 5.16 21.7 140.0 13.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000048280 Zfp738 ENSMUST00000175678 ENSMUSP00000134865 TRANSLATION protein_coding - - 2 114.0 0.0 2.0396 0.0 82.5 0.0 -4,-5 0.0 - 0.402 MINOR ENSMUSG00000048280 Zfp738 ENSMUST00000220552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048280 Zfp738 ENSMUST00000175821 ENSMUSP00000135050 TRANSLATION protein_coding stop - 3 191.0 14.0 3.8 0.0 121.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048280 Zfp738 ENSMUST00000137496 ENSMUSP00000121275 TRANSLATION protein_coding - CCDS36716.2 1 793.0 89.0 4.8396 0.0 383.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000048280 Zfp738 ENSMUST00000223721 - NO_TRANSLATION retained_intron ENSMUSG00000048280 Zfp738 ENSMUST00000110973 ENSMUSP00000106600 TRANSLATION protein_coding stop - 3 126.0 5.0 2.8 0.0 82.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048280 Zfp738 ENSMUST00000125495 ENSMUSP00000135683 TRANSLATION protein_coding - - 1 104.0 0.0 2.0 0.0 82.5 0.0 -4,-5 0.0 - 0.318 MINOR ENSMUSG00000053216 Btn2a2 ENSMUST00000110433 ENSMUSP00000106063 TRANSLATION protein_coding - CCDS36619.1 1 514.0 0.0 6.788 0.3 186.7 2.0 3,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000053216 Btn2a2 ENSMUST00000041541 ENSMUSP00000048251 TRANSLATION protein_coding - - 2 417.0 0.0 5.006 0.0 137.0 2.0 3,-2 0.0054 - 4.15 MINOR ENSMUSG00000053216 Btn2a2 ENSMUST00000110432 ENSMUSP00000106062 TRANSLATION protein_coding - CCDS36619.1 1 514.0 0.0 6.788 0.3 186.7 2.0 3,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000053216 Btn2a2 ENSMUST00000223877 ENSMUSP00000153680 TRANSLATION protein_coding - - - 505.0 0.0 6.59 0.0 186.7 2.0 3,-2 0.2751 - 7.604 ALTERNATIVE:2 ENSMUSG00000052075 1700029F12Rik ENSMUST00000091377 ENSMUSP00000088938 TRANSLATION protein_coding - CCDS36755.1 1 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8666 - 0.0 PRINCIPAL:1 ENSMUSG00000052075 1700029F12Rik ENSMUST00000222360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052075 1700029F12Rik ENSMUST00000221277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033991 Skic3 ENSMUST00000091466 ENSMUSP00000089045 TRANSLATION protein_coding - CCDS36735.1 5 1563.0 0.0 7.014 20.7 94.3 0.0 -4,-5 1.0 38 16.0 PRINCIPAL:1 ENSMUSG00000033991 Skic3 ENSMUST00000225147 ENSMUSP00000153556 TRANSLATION protein_coding start - - 66.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000033991 Skic3 ENSMUST00000223902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033991 Skic3 ENSMUST00000225341 - NO_TRANSLATION retained_intron ENSMUSG00000033991 Skic3 ENSMUST00000224790 ENSMUSP00000153156 TRANSLATION protein_coding start/stop - - 273.0 0.0 0.94 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000033991 Skic3 ENSMUST00000224914 - NO_TRANSLATION retained_intron ENSMUSG00000033991 Skic3 ENSMUST00000224289 - NO_TRANSLATION retained_intron ENSMUSG00000033991 Skic3 ENSMUST00000223635 - NO_TRANSLATION retained_intron ENSMUSG00000033991 Skic3 ENSMUST00000225220 ENSMUSP00000153309 TRANSLATION nonsense_mediated_decay start - - 117.0 0.0 1.462 0.0 18.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033991 Skic3 ENSMUST00000224386 ENSMUSP00000153521 TRANSLATION protein_coding - CCDS36735.1 - 1563.0 0.0 7.014 20.7 94.3 0.0 -4,-5 1.0 38 16.0 PRINCIPAL:1 ENSMUSG00000021207 Akr1c21 ENSMUST00000137279 - NO_TRANSLATION retained_intron ENSMUSG00000021207 Akr1c21 ENSMUST00000021628 ENSMUSP00000021628 TRANSLATION protein_coding - CCDS26225.1 1 323.0 46.0 7.75 10.3 180.8 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000021207 Akr1c21 ENSMUST00000223285 ENSMUSP00000152465 TRANSLATION nonsense_mediated_decay - - 5 193.0 19.0 4.5 0.0 112.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021492 F12 ENSMUST00000021948 ENSMUSP00000021948 TRANSLATION protein_coding - CCDS36675.1 1 597.0 5.0 4.73 0.0 447.9 0.0 4,-1 1.0 7 17.0 PRINCIPAL:1 ENSMUSG00000021492 F12 ENSMUST00000170921 ENSMUSP00000125771 TRANSLATION protein_coding - - 3 143.0 3.0 2.0 0.0 94.4 0.0 4,-1 0.0 1 3.54 MINOR ENSMUSG00000037960 Card19 ENSMUST00000222733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037960 Card19 ENSMUST00000048946 ENSMUSP00000047569 TRANSLATION protein_coding - CCDS49260.1 1 183.0 0.0 2.0 12.0 24.4 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000037960 Card19 ENSMUST00000223496 - NO_TRANSLATION retained_intron ENSMUSG00000037960 Card19 ENSMUST00000221443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037960 Card19 ENSMUST00000223159 - NO_TRANSLATION retained_intron ENSMUSG00000042082 Arsb ENSMUST00000220652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042082 Arsb ENSMUST00000091403 ENSMUSP00000088964 TRANSLATION protein_coding - CCDS36749.1 1 534.0 5.0 6.87 1.0 254.3 0.0 0,-2 1.0 7 17.0 PRINCIPAL:1 ENSMUSG00000090641 Zfp712 ENSMUST00000167565 ENSMUSP00000126665 TRANSLATION protein_coding - CCDS49297.1 1 705.0 84.0 1.0 0.4 466.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000025875 Tspan17 ENSMUST00000131692 ENSMUSP00000115287 TRANSLATION protein_coding stop - 1 285.0 0.0 4.75 6.1 216.9 11.0 -4,-5 0.2995 - -2.0 MINOR ENSMUSG00000025875 Tspan17 ENSMUST00000099503 ENSMUSP00000097102 TRANSLATION protein_coding - - 5 273.0 0.0 4.75 36.2 217.2 11.0 -4,-5 0.8498 - 10.0 ALTERNATIVE:1 ENSMUSG00000025875 Tspan17 ENSMUST00000026993 ENSMUSP00000026993 TRANSLATION protein_coding - CCDS26536.1 1 270.0 0.0 4.75 36.2 216.9 11.0 -4,-5 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000025875 Tspan17 ENSMUST00000139574 - NO_TRANSLATION retained_intron ENSMUSG00000025875 Tspan17 ENSMUST00000163796 ENSMUSP00000131671 TRANSLATION protein_coding stop - 3 193.0 0.0 3.684 0.0 139.3 7.0 -4,-7 0.0034 - -2.0 MINOR ENSMUSG00000025875 Tspan17 ENSMUST00000145574 ENSMUSP00000119687 TRANSLATION protein_coding start - 3 192.0 0.0 3.446 0.0 145.9 6.0 4,-1 0.0034 - -2.0 MINOR ENSMUSG00000025875 Tspan17 ENSMUST00000130568 ENSMUSP00000123607 TRANSLATION protein_coding start - 5 187.0 0.0 2.56 0.0 147.3 7.0 -4,-6 0.0044 - -2.0 MINOR ENSMUSG00000025875 Tspan17 ENSMUST00000171859 ENSMUSP00000128568 TRANSLATION protein_coding start/stop - 3 145.0 0.0 2.38 0.0 101.3 5.0 0,-4 0.0044 - -2.0 MINOR ENSMUSG00000025875 Tspan17 ENSMUST00000163915 ENSMUSP00000130765 TRANSLATION protein_coding - - 5 152.0 0.0 2.61 0.0 64.3 6.0 -4,-7 0.0044 - 1.722 MINOR ENSMUSG00000035834 Polr3g ENSMUST00000048993 ENSMUSP00000035289 TRANSLATION protein_coding - CCDS36738.1 1 223.0 0.0 3.25 12.5 117.1 0.0 -4,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000035834 Polr3g ENSMUST00000162535 - NO_TRANSLATION retained_intron ENSMUSG00000035834 Polr3g ENSMUST00000161093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035834 Polr3g ENSMUST00000161920 ENSMUSP00000125054 TRANSLATION protein_coding - - 1 160.0 0.0 2.0 0.0 53.8 0.0 -4,-2 0.0 2 5.7 MINOR ENSMUSG00000035834 Polr3g ENSMUST00000160331 - NO_TRANSLATION retained_intron ENSMUSG00000069268 H2bc7 ENSMUST00000105106 ENSMUSP00000100738 TRANSLATION protein_coding - CCDS26350.1 - 126.0 0.0 1.0 12.5 92.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034918 Cdhr2 ENSMUST00000037145 ENSMUSP00000043596 TRANSLATION protein_coding - CCDS36669.1 1 1308.0 59.0 12.95 3.6 301.9 0.0 4,-1 1.0 23 19.0 PRINCIPAL:1 ENSMUSG00000033834 Tpbpa ENSMUST00000225936 ENSMUSP00000152958 TRANSLATION nonsense_mediated_decay - - - 60.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0933 - -2.0 MINOR ENSMUSG00000033834 Tpbpa ENSMUST00000225275 ENSMUSP00000153002 TRANSLATION protein_coding - - - 125.0 0.0 0.6 0.0 0.0 0.0 4,-1 0.2257 - 3.132 MINOR ENSMUSG00000033834 Tpbpa ENSMUST00000021885 ENSMUSP00000021885 TRANSLATION protein_coding - CCDS36693.1 1 124.0 0.0 1.15 0.1 0.0 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000021213 Akr1c13 ENSMUST00000128892 ENSMUSP00000122246 TRANSLATION nonsense_mediated_decay - - 5 41.0 5.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021213 Akr1c13 ENSMUST00000140971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021213 Akr1c13 ENSMUST00000021634 ENSMUSP00000021634 TRANSLATION protein_coding - CCDS26220.1 1 323.0 48.0 7.75 9.9 205.2 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000006490 Prl8a9 ENSMUST00000006662 ENSMUSP00000006662 TRANSLATION protein_coding - CCDS26400.1 1 241.0 0.0 4.3 0.1 173.5 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021514 Zfp369 ENSMUST00000126879 ENSMUSP00000119114 TRANSLATION protein_coding - CCDS26605.2 1 845.0 20.0 3.15 0.0 362.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000021514 Zfp369 ENSMUST00000155732 ENSMUSP00000119796 TRANSLATION protein_coding stop - 3 70.0 0.0 1.25 0.0 67.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021514 Zfp369 ENSMUST00000130799 ENSMUSP00000116221 TRANSLATION protein_coding - - 1 382.0 0.0 2.75 0.0 266.5 0.0 -4,-5 0.0052 - 5.442 MINOR ENSMUSG00000021514 Zfp369 ENSMUST00000125510 - NO_TRANSLATION retained_intron ENSMUSG00000021514 Zfp369 ENSMUST00000222364 - NO_TRANSLATION retained_intron ENSMUSG00000037816 Fbxw17 ENSMUST00000177233 - NO_TRANSLATION retained_intron ENSMUSG00000037816 Fbxw17 ENSMUST00000176424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037816 Fbxw17 ENSMUST00000177245 - NO_TRANSLATION retained_intron ENSMUSG00000037816 Fbxw17 ENSMUST00000176508 - NO_TRANSLATION retained_intron ENSMUSG00000037816 Fbxw17 ENSMUST00000176479 ENSMUSP00000135527 TRANSLATION nonsense_mediated_decay - - 1 43.0 0.0 0.0 0.0 37.4 0.0 -4,-5 0.0188 - -2.0 MINOR ENSMUSG00000037816 Fbxw17 ENSMUST00000176543 ENSMUSP00000134899 TRANSLATION protein_coding start - 3 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037816 Fbxw17 ENSMUST00000176976 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037816 Fbxw17 ENSMUST00000176913 ENSMUSP00000135671 TRANSLATION nonsense_mediated_decay - - 2 43.0 0.0 0.0 0.0 37.4 0.0 -4,-5 0.0188 1 -2.0 MINOR ENSMUSG00000037816 Fbxw17 ENSMUST00000176772 ENSMUSP00000135878 TRANSLATION protein_coding start - 3 91.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000037816 Fbxw17 ENSMUST00000177541 - NO_TRANSLATION retained_intron ENSMUSG00000037816 Fbxw17 ENSMUST00000176298 - NO_TRANSLATION retained_intron ENSMUSG00000037816 Fbxw17 ENSMUST00000176470 - NO_TRANSLATION retained_intron ENSMUSG00000037816 Fbxw17 ENSMUST00000046974 ENSMUSP00000041750 TRANSLATION protein_coding - CCDS36661.1 1 466.0 0.0 0.0 2.2 38.1 0.0 -4,-5 1.0 8 7.0 PRINCIPAL:1 ENSMUSG00000044164 Rnf182 ENSMUST00000161817 ENSMUSP00000125601 TRANSLATION protein_coding stop - 3 30.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000044164 Rnf182 ENSMUST00000059986 ENSMUSP00000062005 TRANSLATION protein_coding - CCDS26480.1 1 247.0 8.0 0.7 23.7 29.9 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000064140 Trim38 ENSMUST00000074067 ENSMUSP00000073709 TRANSLATION protein_coding - CCDS26370.1 1 471.0 16.0 2.758 0.0 170.5 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000064140 Trim38 ENSMUST00000226039 ENSMUSP00000153240 TRANSLATION protein_coding - CCDS26370.1 - 471.0 16.0 2.758 0.0 170.5 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000064140 Trim38 ENSMUST00000223911 ENSMUSP00000153540 TRANSLATION nonsense_mediated_decay - - - 249.0 16.0 1.6 0.0 70.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000049517 Rps23 ENSMUST00000051955 ENSMUSP00000054490 TRANSLATION protein_coding - CCDS26674.1 1 143.0 0.0 3.0 34.9 176.0 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000049517 Rps23 ENSMUST00000224463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049517 Rps23 ENSMUST00000224430 - NO_TRANSLATION retained_intron ENSMUSG00000021694 Ercc8 ENSMUST00000054835 ENSMUSP00000059211 TRANSLATION protein_coding - CCDS26761.1 1 397.0 0.0 9.58 20.6 77.5 0.0 -4,0 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021694 Ercc8 ENSMUST00000133957 ENSMUSP00000116226 TRANSLATION nonsense_mediated_decay start - 5 54.0 0.0 1.75 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021694 Ercc8 ENSMUST00000120672 ENSMUSP00000112746 TRANSLATION protein_coding - - 1 200.0 0.0 5.43 0.0 13.4 0.0 -4,0 0.0 - 1.038 MINOR ENSMUSG00000021694 Ercc8 ENSMUST00000142931 ENSMUSP00000118154 TRANSLATION nonsense_mediated_decay - - 5 194.0 0.0 5.205 0.0 13.4 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000021694 Ercc8 ENSMUST00000129117 ENSMUSP00000116507 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 1.75 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000021694 Ercc8 ENSMUST00000137425 - NO_TRANSLATION retained_intron ENSMUSG00000021694 Ercc8 ENSMUST00000123657 ENSMUSP00000117492 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 1.75 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000021694 Ercc8 ENSMUST00000123182 ENSMUSP00000121777 TRANSLATION nonsense_mediated_decay - - 3 57.0 0.0 1.75 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000021694 Ercc8 ENSMUST00000123138 ENSMUSP00000119212 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 1.75 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021694 Ercc8 ENSMUST00000152634 ENSMUSP00000122802 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 1.75 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000084136 Vmn1r207 ENSMUST00000237024 ENSMUSP00000157896 TRANSLATION protein_coding - - - 312.0 0.0 0.0 0.0 116.8 4.0 -2,-5 0.7366 - 6.0 PRINCIPAL:1 ENSMUSG00000084136 Vmn1r207 ENSMUST00000119931 ENSMUSP00000158190 TRANSLATION protein_coding - - - 312.0 0.0 0.0 0.0 116.8 4.0 -2,-5 0.7366 - 6.0 PRINCIPAL:1 ENSMUSG00000084136 Vmn1r207 ENSMUST00000236800 ENSMUSP00000157931 TRANSLATION protein_coding - - - 312.0 0.0 0.0 0.0 116.8 4.0 -2,-5 0.7366 - 6.0 PRINCIPAL:1 ENSMUSG00000095916 Vmn1r191 ENSMUST00000235950 ENSMUSP00000158274 TRANSLATION nonsense_mediated_decay - CCDS49218.1 - 298.0 0.0 0.0 1.4 108.9 3.0 1,-4 1.0 - -2.0 MINOR ENSMUSG00000095916 Vmn1r191 ENSMUST00000237107 ENSMUSP00000158004 TRANSLATION protein_coding - CCDS49218.1 - 298.0 0.0 0.0 1.4 108.9 3.0 1,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000095916 Vmn1r191 ENSMUST00000072369 ENSMUSP00000072206 TRANSLATION protein_coding - CCDS49218.1 - 298.0 0.0 0.0 1.4 108.9 3.0 1,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000052727 Map1b ENSMUST00000223725 ENSMUSP00000153390 TRANSLATION protein_coding - - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000052727 Map1b ENSMUST00000224702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052727 Map1b ENSMUST00000064762 ENSMUSP00000068374 TRANSLATION protein_coding - CCDS26723.1 1 2464.0 0.0 2.0 0.1 154.7 0.0 -4,-5 1.0 84 12.0 PRINCIPAL:1 ENSMUSG00000052727 Map1b ENSMUST00000223693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052727 Map1b ENSMUST00000224605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052727 Map1b ENSMUST00000223820 - NO_TRANSLATION retained_intron ENSMUSG00000090659 Zfp493 ENSMUST00000181319 ENSMUSP00000137936 TRANSLATION protein_coding - - 1 110.0 0.0 2.0 0.0 76.6 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000090659 Zfp493 ENSMUST00000220570 ENSMUSP00000152847 TRANSLATION protein_coding stop - 3 85.0 6.0 2.0 0.0 99.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090659 Zfp493 ENSMUST00000164936 ENSMUSP00000132282 TRANSLATION protein_coding - CCDS49304.1 1 384.0 44.0 4.0 0.0 268.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000090659 Zfp493 ENSMUST00000223540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090659 Zfp493 ENSMUST00000180507 - NO_TRANSLATION retained_intron ENSMUSG00000004341 Gpx6 ENSMUST00000136668 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004341 Gpx6 ENSMUST00000004453 ENSMUSP00000004453 TRANSLATION protein_coding - CCDS26271.1 1 221.0 0.0 4.0 7.0 141.3 0.0 4,-1 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000021534 Cfap90 ENSMUST00000222604 ENSMUSP00000152877 TRANSLATION protein_coding - CCDS49306.1 1 182.0 0.0 2.5 0.1 131.8 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000021534 Cfap90 ENSMUST00000022007 ENSMUSP00000022007 TRANSLATION protein_coding - CCDS49306.1 1 182.0 0.0 2.5 0.1 131.8 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000038883 Prl3a1 ENSMUST00000049463 ENSMUSP00000046522 TRANSLATION protein_coding - CCDS26394.1 1 227.0 0.0 2.9 0.1 193.1 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000038883 Prl3a1 ENSMUST00000223739 - NO_TRANSLATION retained_intron ENSMUSG00000021420 Fars2 ENSMUST00000225525 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021420 Fars2 ENSMUST00000224357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021420 Fars2 ENSMUST00000224916 ENSMUSP00000153019 TRANSLATION nonsense_mediated_decay - - - 470.0 18.0 5.5 0.0 211.1 0.0 -4,-2 0.0155 8 -2.0 MINOR ENSMUSG00000021420 Fars2 ENSMUST00000224611 ENSMUSP00000153658 TRANSLATION protein_coding - CCDS26453.1 - 451.0 18.0 6.5 8.8 249.3 0.0 -4,-2 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000021420 Fars2 ENSMUST00000223796 ENSMUSP00000153209 TRANSLATION protein_coding stop - - 202.0 6.0 1.0 0.0 64.3 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000021420 Fars2 ENSMUST00000223905 - NO_TRANSLATION retained_intron ENSMUSG00000021420 Fars2 ENSMUST00000224540 - NO_TRANSLATION retained_intron ENSMUSG00000021420 Fars2 ENSMUST00000224241 ENSMUSP00000153628 TRANSLATION protein_coding - CCDS26453.1 - 451.0 18.0 6.5 8.8 249.3 0.0 -4,-2 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000021420 Fars2 ENSMUST00000225948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021420 Fars2 ENSMUST00000099582 ENSMUSP00000097177 TRANSLATION protein_coding - CCDS26454.1 1 219.0 12.0 4.75 2.7 187.1 0.0 -4,-5 0.0519 6 7.422 MINOR ENSMUSG00000021420 Fars2 ENSMUST00000225048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021420 Fars2 ENSMUST00000224619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021420 Fars2 ENSMUST00000021857 ENSMUSP00000021857 TRANSLATION protein_coding - CCDS26453.1 1 451.0 18.0 6.5 8.8 249.3 0.0 -4,-2 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000021418 Rpp40 ENSMUST00000174231 ENSMUSP00000134210 TRANSLATION protein_coding start - 2 84.0 0.0 1.5 0.0 58.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021418 Rpp40 ENSMUST00000174230 ENSMUSP00000134228 TRANSLATION protein_coding - - 5 340.0 0.0 7.5 1.0 258.4 0.0 -4,-2 0.0374 4 7.164 MINOR ENSMUSG00000021418 Rpp40 ENSMUST00000171686 ENSMUSP00000130290 TRANSLATION protein_coding - CCDS26451.2 1 363.0 0.0 8.25 20.7 314.0 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000021418 Rpp40 ENSMUST00000174852 - NO_TRANSLATION retained_intron ENSMUSG00000060969 Irx1 ENSMUST00000223460 ENSMUSP00000152128 TRANSLATION protein_coding start/stop - 3 273.0 0.0 0.4 0.0 58.0 0.0 -4,-5 0.0407 - -2.0 MINOR ENSMUSG00000060969 Irx1 ENSMUST00000223379 ENSMUSP00000152247 TRANSLATION protein_coding start - 2 86.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000060969 Irx1 ENSMUST00000077337 ENSMUSP00000076562 TRANSLATION protein_coding - CCDS26627.1 1 480.0 0.0 0.4 4.6 58.0 0.0 -2,-4 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000021624 Cd180 ENSMUST00000022124 ENSMUSP00000022124 TRANSLATION protein_coding - CCDS26741.1 1 661.0 0.0 4.2 10.3 118.3 0.0 3,-2 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000021624 Cd180 ENSMUST00000172138 ENSMUSP00000131402 TRANSLATION protein_coding - - 2 41.0 0.0 0.2 0.0 0.0 0.0 3,-2 0.0007 - 0.0 MINOR ENSMUSG00000021624 Cd180 ENSMUST00000167144 ENSMUSP00000133015 TRANSLATION protein_coding - - 2 69.0 0.0 0.2 0.0 0.0 0.0 3,-2 0.0007 - 0.0 MINOR ENSMUSG00000021624 Cd180 ENSMUST00000170878 ENSMUSP00000127880 TRANSLATION protein_coding - - 3 105.0 0.0 1.035 0.0 0.0 0.0 3,-2 0.0007 - 0.0 MINOR ENSMUSG00000021624 Cd180 ENSMUST00000171267 ENSMUSP00000129096 TRANSLATION protein_coding - - 1 86.0 0.0 1.2 0.0 0.0 0.0 3,-2 0.0007 - 0.0 MINOR ENSMUSG00000022228 Zscan26 ENSMUST00000110485 ENSMUSP00000106111 TRANSLATION protein_coding - CCDS84009.1 5 466.0 28.0 0.8 0.4 275.4 0.0 -4,-6 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000022228 Zscan26 ENSMUST00000032820 ENSMUSP00000032820 TRANSLATION protein_coding - CCDS49211.1 3 340.0 28.0 0.8 2.3 149.8 0.0 -4,-7 0.5778 6 13.0 MINOR ENSMUSG00000021504 B4galt7 ENSMUST00000133176 ENSMUSP00000123292 TRANSLATION protein_coding stop - 3 220.0 3.0 3.75 0.0 178.8 0.0 -4,-6 0.0023 - -2.0 MINOR ENSMUSG00000021504 B4galt7 ENSMUST00000100764 ENSMUSP00000098327 TRANSLATION protein_coding - CCDS79190.1 1 292.0 3.0 3.75 0.0 167.9 1.0 -4,0 0.0267 - 12.348 MINOR ENSMUSG00000021504 B4galt7 ENSMUST00000142654 - NO_TRANSLATION retained_intron ENSMUSG00000021504 B4galt7 ENSMUST00000064701 ENSMUSP00000068532 TRANSLATION protein_coding - CCDS26550.1 1 327.0 3.0 4.75 14.2 178.8 1.0 -4,0 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000042275 Pelo ENSMUST00000109226 ENSMUSP00000104849 TRANSLATION protein_coding - CCDS26788.1 1 385.0 0.0 1.48 27.5 394.1 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000049539 H1f1 ENSMUST00000055770 ENSMUSP00000062030 TRANSLATION protein_coding - CCDS26369.1 - 213.0 0.0 0.6 1.2 77.6 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000063998 Vmn1r211 ENSMUST00000073728 ENSMUSP00000073405 TRANSLATION protein_coding - CCDS26326.1 - 298.0 0.0 0.0 1.4 133.9 6.0 -3,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000063998 Vmn1r211 ENSMUST00000228645 ENSMUSP00000154146 TRANSLATION protein_coding - CCDS26326.1 - 298.0 0.0 0.0 1.4 133.9 6.0 -3,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000049658 Bdp1 ENSMUST00000167203 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049658 Bdp1 ENSMUST00000038104 ENSMUSP00000038321 TRANSLATION protein_coding - CCDS49343.1 5 2467.0 0.0 3.3 0.0 95.5 0.0 -4,-1 1.0 9 8.0 PRINCIPAL:2 ENSMUSG00000049658 Bdp1 ENSMUST00000163097 ENSMUSP00000126435 TRANSLATION nonsense_mediated_decay - - 3 128.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0005 - -2.0 MINOR ENSMUSG00000049658 Bdp1 ENSMUST00000105697 - NO_TRANSLATION retained_intron ENSMUSG00000049658 Bdp1 ENSMUST00000109379 ENSMUSP00000105005 TRANSLATION protein_coding - - 5 2471.0 0.0 3.3 0.0 95.5 0.0 -4,-1 0.7371 9 8.0 ALTERNATIVE:2 ENSMUSG00000049658 Bdp1 ENSMUST00000099262 ENSMUSP00000096868 TRANSLATION nonsense_mediated_decay start - 1 325.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000049658 Bdp1 ENSMUST00000167815 - NO_TRANSLATION retained_intron ENSMUSG00000076746 Trgv6 ENSMUST00000198330 ENSMUSP00000142811 TRANSLATION TR_V_gene stop - - 121.0 0.0 1.0 0.0 55.5 0.0 0,-5 0.7835 - -2.0 PRINCIPAL:1 ENSMUSG00000049115 Agtr1a ENSMUST00000222503 ENSMUSP00000152873 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049115 Agtr1a ENSMUST00000222370 ENSMUSP00000152133 TRANSLATION protein_coding stop - 3 60.0 0.0 2.06 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000049115 Agtr1a ENSMUST00000223201 ENSMUSP00000152265 TRANSLATION protein_coding stop - 3 20.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049115 Agtr1a ENSMUST00000143181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049115 Agtr1a ENSMUST00000066412 ENSMUSP00000070958 TRANSLATION protein_coding - CCDS26415.1 1 359.0 0.0 3.06 16.0 173.8 8.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000049115 Agtr1a ENSMUST00000221743 ENSMUSP00000152634 TRANSLATION protein_coding stop - 2 51.0 0.0 1.73 0.0 0.0 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025868 Higd2a ENSMUST00000026986 ENSMUSP00000026986 TRANSLATION protein_coding - CCDS26532.1 1 106.0 0.0 1.0 11.1 82.0 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000021431 Snrnp48 ENSMUST00000223893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021431 Snrnp48 ENSMUST00000223814 - NO_TRANSLATION retained_intron ENSMUSG00000021431 Snrnp48 ENSMUST00000224192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021431 Snrnp48 ENSMUST00000223680 - NO_TRANSLATION retained_intron ENSMUSG00000021431 Snrnp48 ENSMUST00000223557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021431 Snrnp48 ENSMUST00000091641 ENSMUSP00000089230 TRANSLATION protein_coding - CCDS36635.1 1 337.0 5.0 1.0 7.9 38.2 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000021764 Ndufs4 ENSMUST00000225701 - NO_TRANSLATION retained_intron ENSMUSG00000021764 Ndufs4 ENSMUST00000225978 ENSMUSP00000155936 TRANSLATION protein_coding start - - 55.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000021764 Ndufs4 ENSMUST00000022286 ENSMUSP00000022286 TRANSLATION protein_coding - CCDS49368.1 1 175.0 0.0 3.2 14.0 132.5 0.0 -4,0 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000021764 Ndufs4 ENSMUST00000225707 ENSMUSP00000153059 TRANSLATION nonsense_mediated_decay start - - 35.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000021764 Ndufs4 ENSMUST00000232101 ENSMUSP00000156276 TRANSLATION protein_coding start - - 118.0 0.0 1.45 2.0 60.4 0.0 -4,0 0.0291 3 -2.0 MINOR ENSMUSG00000021764 Ndufs4 ENSMUST00000225035 ENSMUSP00000153334 TRANSLATION nonsense_mediated_decay - - - 37.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000021381 Barx1 ENSMUST00000021813 ENSMUSP00000021813 TRANSLATION protein_coding - CCDS49258.1 1 254.0 0.0 1.35 11.2 73.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021216 Tubal3 ENSMUST00000223035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021216 Tubal3 ENSMUST00000021639 ENSMUSP00000021639 TRANSLATION protein_coding - CCDS49202.1 1 446.0 27.0 2.5 3.3 376.8 0.0 -4,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000069189 Zdhhc11 ENSMUST00000091493 ENSMUSP00000089075 TRANSLATION protein_coding - CCDS36729.1 1 347.0 7.0 6.198 0.0 104.0 6.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000069189 Zdhhc11 ENSMUST00000222487 ENSMUSP00000152197 TRANSLATION nonsense_mediated_decay - - 1 323.0 7.0 6.16 0.0 104.0 6.0 -4,-5 0.094 - -2.0 MINOR ENSMUSG00000069189 Zdhhc11 ENSMUST00000222951 ENSMUSP00000152788 TRANSLATION nonsense_mediated_decay - - 1 151.0 1.0 2.0 0.0 0.0 3.0 -4,-5 0.003 - -2.0 MINOR ENSMUSG00000021610 Clptm1l ENSMUST00000222343 - NO_TRANSLATION retained_intron ENSMUSG00000021610 Clptm1l ENSMUST00000221417 - NO_TRANSLATION retained_intron ENSMUSG00000021610 Clptm1l ENSMUST00000022102 ENSMUSP00000022102 TRANSLATION protein_coding - CCDS56894.1 1 539.0 0.0 0.0 16.3 458.4 0.0 0,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000021610 Clptm1l ENSMUST00000221130 - NO_TRANSLATION retained_intron ENSMUSG00000114073 Spata31e1 ENSMUST00000223497 ENSMUSP00000152580 TRANSLATION protein_coding stop - 3 129.0 0.0 0.0 0.0 50.5 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000114073 Spata31e1 ENSMUST00000220773 ENSMUSP00000152227 TRANSLATION protein_coding - - 5 1110.0 0.0 1.0 0.0 78.8 0.0 -4,-5 0.9877 4 12.0 PRINCIPAL:1 ENSMUSG00000114073 Spata31e1 ENSMUST00000220663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069305 H4c18 ENSMUST00000102979 ENSMUSP00000100044 TRANSLATION protein_coding - CCDS26300.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039242 B3galnt2 ENSMUST00000220681 ENSMUSP00000152239 TRANSLATION protein_coding start - 3 251.0 0.0 5.9 0.0 87.3 0.0 -4,-5 0.0024 2 -2.0 MINOR ENSMUSG00000039242 B3galnt2 ENSMUST00000222420 ENSMUSP00000152723 TRANSLATION protein_coding start - 3 124.0 0.0 2.5 0.0 37.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039242 B3galnt2 ENSMUST00000222110 ENSMUSP00000152720 TRANSLATION nonsense_mediated_decay - - 5 123.0 0.0 2.0 0.0 0.0 0.0 1,-3 0.0015 - -2.0 MINOR ENSMUSG00000039242 B3galnt2 ENSMUST00000221974 ENSMUSP00000152397 TRANSLATION protein_coding - CCDS26246.1 1 504.0 0.0 9.97 11.4 87.3 0.0 1,-3 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000039242 B3galnt2 ENSMUST00000223307 - NO_TRANSLATION retained_intron ENSMUSG00000039242 B3galnt2 ENSMUST00000223389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039242 B3galnt2 ENSMUST00000221300 ENSMUSP00000152755 TRANSLATION protein_coding - CCDS26246.1 1 504.0 0.0 9.97 11.4 87.3 0.0 1,-3 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000039242 B3galnt2 ENSMUST00000099747 ENSMUSP00000097336 TRANSLATION protein_coding - CCDS26246.1 1 504.0 0.0 9.97 11.4 87.3 0.0 1,-3 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000039242 B3galnt2 ENSMUST00000220932 - NO_TRANSLATION retained_intron ENSMUSG00000039242 B3galnt2 ENSMUST00000221333 ENSMUSP00000152671 TRANSLATION protein_coding start/stop - 5 201.0 0.0 4.19 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039242 B3galnt2 ENSMUST00000223483 ENSMUSP00000152457 TRANSLATION nonsense_mediated_decay - - 1 143.0 0.0 2.0 0.0 0.0 0.0 1,-3 0.0015 - -2.0 MINOR ENSMUSG00000039242 B3galnt2 ENSMUST00000221764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074870 Cts3 ENSMUST00000054702 ENSMUSP00000058359 TRANSLATION protein_coding - CCDS36695.1 1 332.0 4.0 6.83 8.5 276.7 0.0 2,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000074870 Cts3 ENSMUST00000224855 ENSMUSP00000153683 TRANSLATION nonsense_mediated_decay - - - 142.0 0.0 2.532 0.0 56.1 0.0 2,-2 0.0018 - -2.0 MINOR ENSMUSG00000074870 Cts3 ENSMUST00000225515 - NO_TRANSLATION retained_intron ENSMUSG00000074870 Cts3 ENSMUST00000224050 - NO_TRANSLATION retained_intron ENSMUSG00000074870 Cts3 ENSMUST00000223815 ENSMUSP00000153399 TRANSLATION protein_coding - CCDS36695.1 - 332.0 4.0 6.83 8.5 276.7 0.0 2,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000074870 Cts3 ENSMUST00000224967 - NO_TRANSLATION retained_intron ENSMUSG00000091387 Gcnt4 ENSMUST00000171324 ENSMUSP00000130496 TRANSLATION protein_coding - CCDS49336.1 1 455.0 17.0 1.0 1.5 169.8 0.0 -2,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000021215 Net1 ENSMUST00000222504 ENSMUSP00000152173 TRANSLATION protein_coding - - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000021215 Net1 ENSMUST00000220887 - NO_TRANSLATION retained_intron ENSMUSG00000021215 Net1 ENSMUST00000222017 - NO_TRANSLATION retained_intron ENSMUSG00000021215 Net1 ENSMUST00000223258 ENSMUSP00000152333 TRANSLATION protein_coding - - 1 72.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000021215 Net1 ENSMUST00000222442 - NO_TRANSLATION retained_intron ENSMUSG00000021215 Net1 ENSMUST00000099946 ENSMUSP00000097529 TRANSLATION protein_coding - CCDS36583.1 1 541.0 0.0 6.4 13.3 150.3 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000021215 Net1 ENSMUST00000091853 ENSMUSP00000089464 TRANSLATION protein_coding - CCDS26216.1 1 595.0 0.0 6.4 7.5 150.3 0.0 -4,-7 0.7292 1 14.112 MINOR ENSMUSG00000096284 Tcstv1 ENSMUST00000178510 ENSMUSP00000137348 TRANSLATION protein_coding - CCDS56905.1 - 171.0 0.0 0.0 0.0 296.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096284 Tcstv1 ENSMUST00000190512 ENSMUSP00000140041 TRANSLATION protein_coding - CCDS56905.1 1 171.0 0.0 0.0 0.0 296.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000021384 Susd3 ENSMUST00000141408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021384 Susd3 ENSMUST00000058196 ENSMUSP00000061423 TRANSLATION protein_coding - CCDS26498.1 1 269.0 0.0 2.76 0.4 27.6 2.0 -4,-2 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000021384 Susd3 ENSMUST00000131880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021384 Susd3 ENSMUST00000119721 ENSMUSP00000113631 TRANSLATION protein_coding - - 1 170.0 0.0 2.16 0.0 27.6 2.0 -4,-2 0.017 - 6.698 MINOR ENSMUSG00000021384 Susd3 ENSMUST00000135784 ENSMUSP00000115888 TRANSLATION protein_coding stop - 3 139.0 0.0 1.6 0.0 0.0 2.0 -4,-6 0.0034 1 -2.0 MINOR ENSMUSG00000021384 Susd3 ENSMUST00000021816 ENSMUSP00000021816 TRANSLATION protein_coding - CCDS56880.1 1 257.0 0.0 2.6 0.0 27.6 2.0 -2,0 0.2191 1 7.652 ALTERNATIVE:2 ENSMUSG00000023132 Gzma ENSMUST00000023897 ENSMUSP00000023897 TRANSLATION protein_coding - CCDS26782.1 1 260.0 13.0 4.0 6.6 200.2 0.0 3,-1 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000023132 Gzma ENSMUST00000224282 ENSMUSP00000153593 TRANSLATION protein_coding - - - 257.0 13.0 4.0 0.0 200.2 0.0 -4,-5 0.0875 7 18.0 MINOR ENSMUSG00000021149 Gtpbp4 ENSMUST00000221534 - NO_TRANSLATION retained_intron ENSMUSG00000021149 Gtpbp4 ENSMUST00000222098 ENSMUSP00000152412 TRANSLATION protein_coding - CCDS26236.1 1 634.0 13.0 11.9 35.5 204.3 0.0 -4,-6 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000021149 Gtpbp4 ENSMUST00000021574 ENSMUSP00000021574 TRANSLATION nonsense_mediated_decay - - 1 164.0 6.0 4.3 0.0 36.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021149 Gtpbp4 ENSMUST00000220546 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021149 Gtpbp4 ENSMUST00000222975 - NO_TRANSLATION retained_intron ENSMUSG00000021679 S100z ENSMUST00000022186 ENSMUSP00000022186 TRANSLATION protein_coding - CCDS36752.1 1 99.0 15.0 2.0 33.6 65.4 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000021675 F2rl2 ENSMUST00000022182 ENSMUSP00000022182 TRANSLATION protein_coding - CCDS26702.1 1 369.0 0.0 0.6 1.1 133.7 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000118537 Shld3 ENSMUST00000133280 ENSMUSP00000159139 TRANSLATION protein_coding - - 1 255.0 0.0 0.2 1.1 0.0 0.0 -4,-5 0.6769 - 7.0 PRINCIPAL:1 ENSMUSG00000025871 4833439L19Rik ENSMUST00000143144 ENSMUSP00000120615 TRANSLATION protein_coding stop - 5 133.0 0.0 0.0 0.0 162.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000025871 4833439L19Rik ENSMUST00000126295 ENSMUSP00000121916 TRANSLATION protein_coding stop - 3 45.0 0.0 0.0 0.0 62.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025871 4833439L19Rik ENSMUST00000147318 - NO_TRANSLATION retained_intron ENSMUSG00000025871 4833439L19Rik ENSMUST00000153065 ENSMUSP00000119874 TRANSLATION protein_coding - CCDS56882.1 5 284.0 0.0 0.0 10.6 425.9 0.0 -4,-5 0.8438 6 8.31 MINOR ENSMUSG00000025871 4833439L19Rik ENSMUST00000150938 - NO_TRANSLATION retained_intron ENSMUSG00000025871 4833439L19Rik ENSMUST00000132136 ENSMUSP00000121083 TRANSLATION protein_coding stop - 2 69.0 0.0 0.0 0.0 73.9 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000025871 4833439L19Rik ENSMUST00000143173 - NO_TRANSLATION retained_intron ENSMUSG00000025871 4833439L19Rik ENSMUST00000026989 ENSMUSP00000026989 TRANSLATION protein_coding - CCDS26529.1 1 303.0 0.0 0.0 15.1 432.8 0.0 -4,-6 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000025871 4833439L19Rik ENSMUST00000153708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091183 Gm5141 ENSMUST00000201047 ENSMUSP00000144368 TRANSLATION protein_coding - CCDS79203.1 1 581.0 63.0 1.0 0.8 421.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000091183 Gm5141 ENSMUST00000202582 - NO_TRANSLATION retained_intron ENSMUSG00000091183 Gm5141 ENSMUST00000167516 ENSMUSP00000126604 TRANSLATION protein_coding start - 5 580.0 63.0 1.0 0.8 421.2 0.0 -4,-5 0.5741 - -2.0 MINOR ENSMUSG00000021701 Plk2 ENSMUST00000223756 - NO_TRANSLATION retained_intron ENSMUSG00000021701 Plk2 ENSMUST00000022212 ENSMUSP00000022212 TRANSLATION protein_coding - CCDS26767.1 1 682.0 19.0 10.75 10.3 352.1 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000021701 Plk2 ENSMUST00000225340 - NO_TRANSLATION retained_intron ENSMUSG00000021701 Plk2 ENSMUST00000225156 - NO_TRANSLATION retained_intron ENSMUSG00000021701 Plk2 ENSMUST00000224489 - NO_TRANSLATION retained_intron ENSMUSG00000021650 Ptcd2 ENSMUST00000022153 ENSMUSP00000022153 TRANSLATION protein_coding - CCDS26721.1 1 381.0 0.0 1.616 5.9 46.6 0.0 -4,0 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000045034 Ankrd34b ENSMUST00000061594 ENSMUSP00000054330 TRANSLATION protein_coding - CCDS26681.1 1 508.0 0.0 1.5 7.6 71.5 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000045034 Ankrd34b ENSMUST00000165225 ENSMUSP00000128171 TRANSLATION protein_coding stop - 3 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045034 Ankrd34b ENSMUST00000168871 ENSMUSP00000126289 TRANSLATION protein_coding - CCDS26681.1 1 508.0 0.0 1.5 7.6 71.5 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000021500 Ddx46 ENSMUST00000223736 ENSMUSP00000153328 TRANSLATION protein_coding - CCDS70464.1 - 1032.0 17.0 9.85 7.7 261.6 0.0 -4,-6 1.0 38 20.0 PRINCIPAL:1 ENSMUSG00000021500 Ddx46 ENSMUST00000231097 ENSMUSP00000155176 TRANSLATION protein_coding start/stop - - 144.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021500 Ddx46 ENSMUST00000224551 - NO_TRANSLATION retained_intron ENSMUSG00000021702 Thbs4 ENSMUST00000022213 ENSMUSP00000022213 TRANSLATION protein_coding - CCDS26684.1 1 963.0 115.0 14.55 5.0 667.3 0.0 3,-1 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000021702 Thbs4 ENSMUST00000168299 - NO_TRANSLATION retained_intron ENSMUSG00000042043 Tbca ENSMUST00000220825 ENSMUSP00000152268 TRANSLATION protein_coding - - 3 84.0 0.0 2.25 2.1 80.5 0.0 -4,-5 0.0178 9 8.756 MINOR ENSMUSG00000042043 Tbca ENSMUST00000220819 ENSMUSP00000152391 TRANSLATION nonsense_mediated_decay - - 3 36.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042043 Tbca ENSMUST00000220561 - NO_TRANSLATION retained_intron ENSMUSG00000042043 Tbca ENSMUST00000046644 ENSMUSP00000038781 TRANSLATION protein_coding - CCDS26694.1 1 108.0 0.0 3.08 32.2 109.2 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000021715 Cwc27 ENSMUST00000147514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021715 Cwc27 ENSMUST00000022228 ENSMUSP00000022228 TRANSLATION protein_coding - CCDS26752.1 1 469.0 9.0 5.1 15.2 151.1 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000021715 Cwc27 ENSMUST00000141495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021715 Cwc27 ENSMUST00000154165 ENSMUSP00000119076 TRANSLATION protein_coding stop - 3 83.0 4.0 2.5 0.0 77.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000093668 Pou5f2 ENSMUST00000175955 ENSMUSP00000135597 TRANSLATION protein_coding - CCDS56895.1 - 329.0 0.0 0.8 2.5 145.5 0.0 -4,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000045509 Gpr150 ENSMUST00000056130 ENSMUSP00000049592 TRANSLATION protein_coding - CCDS26655.1 - 427.0 0.0 0.1 2.0 74.8 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000046932 Vmn1r193 ENSMUST00000227562 ENSMUSP00000154007 TRANSLATION protein_coding - CCDS26312.1 - 319.0 0.0 0.0 0.0 119.2 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046932 Vmn1r193 ENSMUST00000057516 ENSMUSP00000058480 TRANSLATION protein_coding - CCDS26312.1 - 319.0 0.0 0.0 0.0 119.2 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046932 Vmn1r193 ENSMUST00000227457 ENSMUSP00000154364 TRANSLATION protein_coding - CCDS26312.1 - 319.0 0.0 0.0 0.0 119.2 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046932 Vmn1r193 ENSMUST00000228303 ENSMUSP00000154019 TRANSLATION protein_coding - CCDS26312.1 - 319.0 0.0 0.0 0.0 119.2 4.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000021765 Fst ENSMUST00000231498 - NO_TRANSLATION retained_intron ENSMUSG00000021765 Fst ENSMUST00000223640 ENSMUSP00000153365 TRANSLATION protein_coding - - - 317.0 0.0 5.0 15.9 185.2 0.0 3,-1 0.7625 8 10.636 MINOR ENSMUSG00000021765 Fst ENSMUST00000231252 ENSMUSP00000156375 TRANSLATION protein_coding - CCDS36787.1 - 343.0 0.0 5.15 21.3 185.2 0.0 3,-1 1.0 8 12.0 PRINCIPAL:4 ENSMUSG00000021765 Fst ENSMUST00000223865 - NO_TRANSLATION retained_intron ENSMUSG00000021765 Fst ENSMUST00000022287 ENSMUSP00000022287 TRANSLATION protein_coding - - 1 344.0 0.0 5.15 21.3 185.2 0.0 3,-1 0.877 8 12.0 ALTERNATIVE:1 ENSMUSG00000021765 Fst ENSMUST00000225068 ENSMUSP00000153451 TRANSLATION protein_coding start - - 112.0 0.0 2.0 0.0 79.3 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000021395 Spin1 ENSMUST00000223152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021395 Spin1 ENSMUST00000095797 ENSMUSP00000093473 TRANSLATION protein_coding - CCDS26510.1 1 262.0 0.0 2.5 36.2 252.8 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000021665 Hexb ENSMUST00000222700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021665 Hexb ENSMUST00000022169 ENSMUSP00000022169 TRANSLATION protein_coding - CCDS26709.1 1 536.0 2.0 11.65 0.1 384.2 0.0 1,-2 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000021337 Scgn ENSMUST00000021770 ENSMUSP00000021770 TRANSLATION protein_coding - CCDS26375.1 1 276.0 14.0 7.45 12.9 52.9 0.0 -4,-7 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000021337 Scgn ENSMUST00000142826 ENSMUSP00000153251 TRANSLATION protein_coding - - 5 119.0 9.0 3.5 0.0 32.4 0.0 -4,-5 0.0 4 6.336 MINOR ENSMUSG00000021337 Scgn ENSMUST00000226031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021392 Nol8 ENSMUST00000221142 ENSMUSP00000152552 TRANSLATION protein_coding - - 1 1147.0 0.0 1.3 0.0 33.8 0.0 -4,-6 0.9846 17 8.0 PRINCIPAL:4 ENSMUSG00000021392 Nol8 ENSMUST00000221083 ENSMUSP00000152186 TRANSLATION protein_coding stop - 3 225.0 0.0 1.3 0.0 33.8 0.0 -4,-6 0.0755 3 -2.0 MINOR ENSMUSG00000021392 Nol8 ENSMUST00000021824 ENSMUSP00000021824 TRANSLATION protein_coding - CCDS36658.1 5 1165.0 0.0 1.3 0.0 33.8 0.0 -4,-5 0.9285 17 8.0 ALTERNATIVE:2 ENSMUSG00000021392 Nol8 ENSMUST00000222197 ENSMUSP00000152536 TRANSLATION protein_coding - CCDS36658.1 1 1165.0 0.0 1.3 0.0 33.8 0.0 -4,-5 0.9285 17 8.0 ALTERNATIVE:2 ENSMUSG00000021392 Nol8 ENSMUST00000221328 - NO_TRANSLATION retained_intron ENSMUSG00000021392 Nol8 ENSMUST00000223264 ENSMUSP00000152517 TRANSLATION protein_coding stop - 2 93.0 0.0 1.3 0.0 33.8 0.0 -4,-6 0.0743 2 -2.0 MINOR ENSMUSG00000021392 Nol8 ENSMUST00000222333 ENSMUSP00000152324 TRANSLATION protein_coding stop - 3 145.0 0.0 1.3 0.0 33.8 0.0 -4,-5 0.0741 3 -2.0 MINOR ENSMUSG00000021392 Nol8 ENSMUST00000223467 ENSMUSP00000152878 TRANSLATION protein_coding - - 1 1147.0 0.0 1.3 0.0 33.8 0.0 -4,-6 0.9846 17 8.0 PRINCIPAL:4 ENSMUSG00000021392 Nol8 ENSMUST00000223346 - NO_TRANSLATION retained_intron ENSMUSG00000069303 H2bc24 ENSMUST00000110467 ENSMUSP00000106093 TRANSLATION nonsense_mediated_decay - CCDS84011.1 5 126.0 0.0 1.0 12.5 92.7 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000069303 H2bc24 ENSMUST00000180288 ENSMUSP00000136792 TRANSLATION protein_coding - CCDS49215.1 1 134.0 0.0 1.165 0.0 92.7 0.0 -4,-5 0.6768 - 12.0 PRINCIPAL:1 ENSMUSG00000071522 Or2w1 ENSMUST00000215804 ENSMUSP00000149892 TRANSLATION protein_coding - CCDS26268.1 5 317.0 0.0 1.0 11.4 157.6 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071522 Or2w1 ENSMUST00000096006 ENSMUSP00000093705 TRANSLATION protein_coding - CCDS26268.1 - 317.0 0.0 1.0 11.4 157.6 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021553 Slc28a3 ENSMUST00000148396 ENSMUSP00000122865 TRANSLATION nonsense_mediated_decay - - 1 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021553 Slc28a3 ENSMUST00000140760 ENSMUSP00000123681 TRANSLATION nonsense_mediated_decay start - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021553 Slc28a3 ENSMUST00000022036 ENSMUSP00000022036 TRANSLATION protein_coding - CCDS26572.1 1 703.0 9.0 11.3 0.4 387.8 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000021553 Slc28a3 ENSMUST00000151675 - NO_TRANSLATION retained_intron ENSMUSG00000021553 Slc28a3 ENSMUST00000224906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071493 Vmn1r208 ENSMUST00000124841 ENSMUSP00000128942 TRANSLATION protein_coding - CCDS36616.1 - 308.0 0.0 0.0 0.0 112.6 5.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000071493 Vmn1r208 ENSMUST00000227136 ENSMUSP00000153904 TRANSLATION protein_coding - CCDS36616.1 - 308.0 0.0 0.0 0.0 112.6 5.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000116016 Gm49496 ENSMUST00000231096 ENSMUSP00000155119 TRANSLATION protein_coding,RT stop - - 246.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5969 - -2.0 PRINCIPAL:1 ENSMUSG00000048904 Neurog1 ENSMUST00000058475 ENSMUSP00000050484 TRANSLATION protein_coding - CCDS26559.1 - 244.0 0.0 0.6 8.1 57.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050876 Spata31d1a ENSMUST00000224982 ENSMUSP00000152919 TRANSLATION protein_coding - CCDS49284.1 - 1336.0 0.0 0.0 0.0 433.7 1.0 -4,-7 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000050876 Spata31d1a ENSMUST00000225362 - NO_TRANSLATION retained_intron ENSMUSG00000050876 Spata31d1a ENSMUST00000066510 ENSMUSP00000128533 TRANSLATION protein_coding - CCDS49284.1 2 1336.0 0.0 0.0 0.0 433.7 1.0 -4,-7 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000050876 Spata31d1a ENSMUST00000224469 ENSMUSP00000152949 TRANSLATION protein_coding - - - 131.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000044258 Ctla2a ENSMUST00000021880 ENSMUSP00000021880 TRANSLATION protein_coding - CCDS49290.1 1 137.0 0.0 2.25 0.0 55.3 0.0 2,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000044258 Ctla2a ENSMUST00000224054 ENSMUSP00000152927 TRANSLATION nonsense_mediated_decay - - - 38.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000044258 Ctla2a ENSMUST00000225385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044258 Ctla2a ENSMUST00000223750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044258 Ctla2a ENSMUST00000225498 - NO_TRANSLATION retained_intron ENSMUSG00000044258 Ctla2a ENSMUST00000225856 - NO_TRANSLATION retained_intron ENSMUSG00000044258 Ctla2a ENSMUST00000225966 - NO_TRANSLATION retained_intron ENSMUSG00000044258 Ctla2a ENSMUST00000226023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044258 Ctla2a ENSMUST00000225762 - NO_TRANSLATION retained_intron ENSMUSG00000021720 Rnf180 ENSMUST00000224011 ENSMUSP00000153678 TRANSLATION protein_coding - CCDS36775.1 - 575.0 12.0 0.4 0.0 31.4 0.0 -4,-5 0.2601 3 14.0 ALTERNATIVE:2 ENSMUSG00000021720 Rnf180 ENSMUST00000224662 ENSMUSP00000153506 TRANSLATION protein_coding - - - 592.0 12.0 0.4 3.5 31.4 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:4 ENSMUSG00000021720 Rnf180 ENSMUST00000069686 ENSMUSP00000064624 TRANSLATION protein_coding - CCDS36775.1 5 575.0 12.0 0.4 0.0 31.4 0.0 -4,-5 0.2601 3 14.0 ALTERNATIVE:2 ENSMUSG00000021720 Rnf180 ENSMUST00000224749 ENSMUSP00000153051 TRANSLATION protein_coding stop - - 317.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.003 1 -2.0 MINOR ENSMUSG00000021720 Rnf180 ENSMUST00000226044 ENSMUSP00000153478 TRANSLATION protein_coding - - - 591.0 12.0 0.4 3.5 31.4 0.0 -4,-5 0.9832 3 15.0 ALTERNATIVE:2 ENSMUSG00000021569 Trip13 ENSMUST00000223017 ENSMUSP00000152604 TRANSLATION nonsense_mediated_decay start - 1 80.0 0.0 0.55 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021569 Trip13 ENSMUST00000222156 ENSMUSP00000152724 TRANSLATION nonsense_mediated_decay start - 1 23.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021569 Trip13 ENSMUST00000022053 ENSMUSP00000022053 TRANSLATION protein_coding - CCDS26637.1 1 432.0 12.0 10.38 20.1 106.8 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000063894 Zkscan8 ENSMUST00000110481 ENSMUSP00000106107 TRANSLATION protein_coding - CCDS56871.1 2 148.0 0.0 0.6 0.0 127.4 0.0 -4,-6 0.027 - 2.25 MINOR ENSMUSG00000063894 Zkscan8 ENSMUST00000224362 ENSMUSP00000153171 TRANSLATION protein_coding - - - 516.0 36.0 1.6 0.3 348.8 0.0 -4,-6 0.1342 1 15.858 MINOR ENSMUSG00000063894 Zkscan8 ENSMUST00000045228 ENSMUSP00000040248 TRANSLATION protein_coding - CCDS26278.1 1 588.0 36.0 1.6 0.4 384.5 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000063894 Zkscan8 ENSMUST00000156674 ENSMUSP00000116058 TRANSLATION protein_coding stop - 5 253.0 0.0 0.6 0.0 127.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038372 Gmds ENSMUST00000178313 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038372 Gmds ENSMUST00000179717 ENSMUSP00000136223 TRANSLATION nonsense_mediated_decay - - 5 50.0 5.0 1.1 0.0 31.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038372 Gmds ENSMUST00000178294 - NO_TRANSLATION retained_intron ENSMUSG00000038372 Gmds ENSMUST00000041859 ENSMUSP00000036696 TRANSLATION protein_coding - CCDS26426.1 1 372.0 45.0 9.35 12.8 548.4 0.0 -4,-5 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000021597 Slf1 ENSMUST00000151524 ENSMUSP00000118312 TRANSLATION protein_coding - CCDS26657.2 5 1054.0 0.0 3.24 0.4 96.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021597 Slf1 ENSMUST00000159462 ENSMUSP00000124543 TRANSLATION protein_coding stop - 1 266.0 0.0 1.08 0.0 41.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021597 Slf1 ENSMUST00000162005 - NO_TRANSLATION retained_intron ENSMUSG00000021597 Slf1 ENSMUST00000162944 ENSMUSP00000123982 TRANSLATION nonsense_mediated_decay - - 1 175.0 0.0 0.88 0.0 42.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021597 Slf1 ENSMUST00000159300 ENSMUSP00000124865 TRANSLATION protein_coding stop - 3 289.0 0.0 1.08 0.0 42.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021597 Slf1 ENSMUST00000162320 - NO_TRANSLATION retained_intron ENSMUSG00000021597 Slf1 ENSMUST00000162921 ENSMUSP00000124946 TRANSLATION nonsense_mediated_decay - - 5 175.0 0.0 0.88 0.0 42.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071490 Vmn1r212 ENSMUST00000095960 ENSMUSP00000093655 TRANSLATION protein_coding - CCDS26327.1 - 357.0 0.0 0.0 0.0 119.1 0.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000021666 Gfm2 ENSMUST00000161639 ENSMUSP00000125656 TRANSLATION protein_coding - CCDS26708.2 1 779.0 20.0 11.958 10.4 439.7 0.0 -4,-2 0.9741 20 16.43 ALTERNATIVE:1 ENSMUSG00000021666 Gfm2 ENSMUST00000042084 ENSMUSP00000048373 TRANSLATION protein_coding - CCDS70490.1 1 752.0 20.0 11.658 0.9 439.4 0.0 -4,-2 0.2528 20 13.4 MINOR ENSMUSG00000021666 Gfm2 ENSMUST00000159321 - NO_TRANSLATION retained_intron ENSMUSG00000021666 Gfm2 ENSMUST00000161843 - NO_TRANSLATION retained_intron ENSMUSG00000021666 Gfm2 ENSMUST00000160981 ENSMUSP00000125682 TRANSLATION nonsense_mediated_decay start - 3 31.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021666 Gfm2 ENSMUST00000161929 ENSMUSP00000125306 TRANSLATION protein_coding stop - 3 94.0 7.0 0.85 0.0 34.4 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000021666 Gfm2 ENSMUST00000161518 - NO_TRANSLATION retained_intron ENSMUSG00000021666 Gfm2 ENSMUST00000160139 ENSMUSP00000124426 TRANSLATION protein_coding stop - 5 244.0 12.0 5.128 0.0 192.2 0.0 -4,-2 0.0 7 -2.0 MINOR ENSMUSG00000021666 Gfm2 ENSMUST00000161825 ENSMUSP00000125088 TRANSLATION protein_coding - CCDS49338.1 2 741.0 20.0 11.458 0.0 403.7 0.0 -4,-2 0.0941 19 12.332 MINOR ENSMUSG00000021666 Gfm2 ENSMUST00000022170 ENSMUSP00000022170 TRANSLATION protein_coding - CCDS70491.1 2 777.0 20.0 11.958 12.6 439.7 0.0 -4,-1 1.0 20 17.0 PRINCIPAL:4 ENSMUSG00000021666 Gfm2 ENSMUST00000161913 ENSMUSP00000124253 TRANSLATION protein_coding - - 2 543.0 16.0 8.858 0.0 270.0 0.0 -4,-2 0.0 13 3.336 MINOR ENSMUSG00000021666 Gfm2 ENSMUST00000160989 - NO_TRANSLATION retained_intron ENSMUSG00000063529 Stmnd1 ENSMUST00000076622 ENSMUSP00000075923 TRANSLATION protein_coding - CCDS36650.1 1 279.0 0.0 0.0 7.8 27.9 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000074874 Ctla2b ENSMUST00000021884 ENSMUSP00000021884 TRANSLATION protein_coding - CCDS49289.1 1 113.0 0.0 2.5 0.1 55.4 0.0 -4,-5 0.4658 - 8.0 ALTERNATIVE:2 ENSMUSG00000074874 Ctla2b ENSMUST00000225732 ENSMUSP00000153260 TRANSLATION nonsense_mediated_decay start - - 59.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074874 Ctla2b ENSMUST00000225439 ENSMUSP00000153559 TRANSLATION nonsense_mediated_decay - - - 36.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074874 Ctla2b ENSMUST00000171347 ENSMUSP00000131083 TRANSLATION protein_coding - CCDS49288.1 1 112.0 0.0 2.5 0.1 55.4 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000041747 Utp15 ENSMUST00000224842 - NO_TRANSLATION retained_intron ENSMUSG00000041747 Utp15 ENSMUST00000040972 ENSMUSP00000048204 TRANSLATION protein_coding - CCDS26712.1 1 528.0 0.0 4.8 2.4 245.4 0.0 -4,-5 1.0 12 13.0 PRINCIPAL:1 ENSMUSG00000041747 Utp15 ENSMUST00000225100 - NO_TRANSLATION retained_intron ENSMUSG00000041138 Nme8 ENSMUST00000223286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041138 Nme8 ENSMUST00000039340 ENSMUSP00000047052 TRANSLATION protein_coding - CCDS49208.1 1 470.0 4.0 6.593 0.0 155.7 0.0 -4,-5 0.0071 2 5.13 MINOR ENSMUSG00000041138 Nme8 ENSMUST00000091763 ENSMUSP00000089358 TRANSLATION protein_coding - CCDS26262.2 1 586.0 15.0 9.143 3.3 185.2 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000041138 Nme8 ENSMUST00000223466 ENSMUSP00000152780 TRANSLATION nonsense_mediated_decay start - 5 311.0 5.0 2.62 0.0 74.2 0.0 -4,-5 0.0018 1 -2.0 MINOR ENSMUSG00000041138 Nme8 ENSMUST00000144820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041138 Nme8 ENSMUST00000221343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042258 Isl1 ENSMUST00000176444 - NO_TRANSLATION retained_intron ENSMUSG00000042258 Isl1 ENSMUST00000176812 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042258 Isl1 ENSMUST00000036060 ENSMUSP00000044879 TRANSLATION protein_coding - CCDS26790.1 1 349.0 16.0 3.132 35.8 155.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000042258 Isl1 ENSMUST00000177469 - NO_TRANSLATION retained_intron ENSMUSG00000042258 Isl1 ENSMUST00000176044 ENSMUSP00000135567 TRANSLATION protein_coding - - 1 326.0 16.0 3.132 0.7 155.6 0.0 -4,-5 0.1272 - 18.0 MINOR ENSMUSG00000032999 Nlrp4f ENSMUST00000222273 ENSMUSP00000152381 TRANSLATION protein_coding stop - 5 84.0 0.0 1.75 0.0 77.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032999 Nlrp4f ENSMUST00000222559 ENSMUSP00000152824 TRANSLATION protein_coding stop - 2 181.0 7.0 1.678 0.0 98.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032999 Nlrp4f ENSMUST00000222514 ENSMUSP00000152418 TRANSLATION nonsense_mediated_decay - - 2 806.0 10.0 6.228 0.0 215.4 0.0 -4,-5 0.011 - -2.0 MINOR ENSMUSG00000032999 Nlrp4f ENSMUST00000220448 ENSMUSP00000152542 TRANSLATION protein_coding start - 3 172.0 0.0 3.778 0.0 32.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032999 Nlrp4f ENSMUST00000037372 ENSMUSP00000041908 TRANSLATION protein_coding - CCDS49294.1 5 937.0 10.0 9.706 0.1 260.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000032999 Nlrp4f ENSMUST00000223418 ENSMUSP00000152297 TRANSLATION protein_coding stop - 2 112.0 0.0 1.948 0.0 77.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032999 Nlrp4f ENSMUST00000221280 ENSMUSP00000152214 TRANSLATION protein_coding start - 3 65.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032999 Nlrp4f ENSMUST00000221659 ENSMUSP00000152151 TRANSLATION protein_coding - CCDS49294.1 5 937.0 10.0 9.706 0.1 260.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000021612 Slc6a18 ENSMUST00000221987 ENSMUSP00000152697 TRANSLATION protein_coding stop - 3 211.0 7.0 4.33 0.0 241.8 11.0 -4,-5 0.0024 - -2.0 MINOR ENSMUSG00000021612 Slc6a18 ENSMUST00000220703 ENSMUSP00000152605 TRANSLATION nonsense_mediated_decay start - 3 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021612 Slc6a18 ENSMUST00000222029 ENSMUSP00000152525 TRANSLATION protein_coding - CCDS36727.1 1 615.0 11.0 14.07 4.1 599.9 29.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000021612 Slc6a18 ENSMUST00000022105 ENSMUSP00000022105 TRANSLATION protein_coding - - 1 542.0 11.0 11.41 0.0 518.2 22.0 -4,-5 0.0088 - 7.776 MINOR ENSMUSG00000021612 Slc6a18 ENSMUST00000223074 ENSMUSP00000152146 TRANSLATION protein_coding - - 1 605.0 11.0 13.74 0.0 579.1 27.0 -4,-5 0.0725 - 16.092 MINOR ENSMUSG00000021612 Slc6a18 ENSMUST00000220650 ENSMUSP00000152403 TRANSLATION protein_coding - - 1 514.0 11.0 9.933 0.1 454.0 22.0 -4,-5 0.0063 - 6.0 MINOR ENSMUSG00000021612 Slc6a18 ENSMUST00000223026 ENSMUSP00000152516 TRANSLATION nonsense_mediated_decay - - 1 422.0 11.0 8.53 0.0 418.9 18.0 -4,-5 0.0036 - -2.0 MINOR ENSMUSG00000021612 Slc6a18 ENSMUST00000109680 ENSMUSP00000105302 TRANSLATION protein_coding - CCDS49311.1 1 577.0 11.0 12.263 0.8 518.5 27.0 -4,-5 0.0789 - 9.504 MINOR ENSMUSG00000021612 Slc6a18 ENSMUST00000221026 ENSMUSP00000152273 TRANSLATION protein_coding stop - 3 109.0 6.0 2.33 0.0 148.3 6.0 -4,-6 0.0023 - -2.0 MINOR ENSMUSG00000021612 Slc6a18 ENSMUST00000109679 ENSMUSP00000105301 TRANSLATION protein_coding - CCDS49312.1 1 552.0 11.0 11.74 0.4 538.9 24.0 -4,-5 0.0354 - 9.678 MINOR ENSMUSG00000021348 Prl7d1 ENSMUST00000145879 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021348 Prl7d1 ENSMUST00000021776 ENSMUSP00000021776 TRANSLATION protein_coding - - 1 243.0 0.0 4.5 0.1 256.4 0.0 4,-1 0.8114 - 8.0 PRINCIPAL:4 ENSMUSG00000021348 Prl7d1 ENSMUST00000224026 ENSMUSP00000153033 TRANSLATION protein_coding - CCDS26405.1 - 244.0 0.0 4.3 0.1 256.4 0.0 2,-2 0.6747 - 7.598 ALTERNATIVE:2 ENSMUSG00000012422 Tmem167 ENSMUST00000161457 ENSMUSP00000124571 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.0 0.0 72.2 0.0 1,-4 0.0565 2 -2.0 MINOR ENSMUSG00000012422 Tmem167 ENSMUST00000012566 ENSMUSP00000012566 TRANSLATION protein_coding - - 5 60.0 0.0 0.0 0.0 72.2 0.0 1,-4 0.0576 2 6.0 MINOR ENSMUSG00000012422 Tmem167 ENSMUST00000161568 ENSMUSP00000125314 TRANSLATION protein_coding - CCDS36741.1 1 72.0 0.0 0.0 34.9 72.2 0.0 1,-4 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000021708 Rasgrf2 ENSMUST00000216219 ENSMUSP00000149731 TRANSLATION protein_coding - - 5 505.0 0.0 3.395 0.0 167.2 0.0 -4,-7 0.0 8 0.0 MINOR ENSMUSG00000021708 Rasgrf2 ENSMUST00000151408 ENSMUSP00000116892 TRANSLATION protein_coding - - 1 1189.0 0.0 11.405 0.4 432.1 0.0 -4,-7 0.9768 23 12.0 PRINCIPAL:1 ENSMUSG00000021439 Ctsq ENSMUST00000021888 ENSMUSP00000021888 TRANSLATION protein_coding - CCDS26584.1 1 343.0 4.0 5.9 0.1 293.1 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021439 Ctsq ENSMUST00000144401 - NO_TRANSLATION retained_intron ENSMUSG00000021483 Cdk20 ENSMUST00000222562 ENSMUSP00000152606 TRANSLATION nonsense_mediated_decay start - 5 320.0 14.0 6.76 0.0 195.5 0.0 -4,-5 0.0024 2 -2.0 MINOR ENSMUSG00000021483 Cdk20 ENSMUST00000222576 ENSMUSP00000152425 TRANSLATION nonsense_mediated_decay start - 3 159.0 20.0 3.83 0.0 134.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021483 Cdk20 ENSMUST00000220992 - NO_TRANSLATION retained_intron ENSMUSG00000021483 Cdk20 ENSMUST00000222470 ENSMUSP00000152809 TRANSLATION nonsense_mediated_decay start - 5 71.0 6.0 1.83 0.0 87.6 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000021483 Cdk20 ENSMUST00000223279 - NO_TRANSLATION retained_intron ENSMUSG00000021483 Cdk20 ENSMUST00000223011 - NO_TRANSLATION retained_intron ENSMUSG00000021483 Cdk20 ENSMUST00000223121 ENSMUSP00000152171 TRANSLATION nonsense_mediated_decay - - 1 188.0 20.0 4.66 0.0 173.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021483 Cdk20 ENSMUST00000223419 ENSMUSP00000152554 TRANSLATION nonsense_mediated_decay start - 3 48.0 2.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021483 Cdk20 ENSMUST00000021939 ENSMUSP00000021939 TRANSLATION protein_coding - CCDS26601.1 1 346.0 20.0 7.59 19.0 221.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000057554 Lgals8 ENSMUST00000099820 ENSMUSP00000097408 TRANSLATION protein_coding - CCDS36592.1 1 316.0 18.0 7.582 16.9 248.8 0.0 -4,-5 1.0 10 21.604 PRINCIPAL:1 ENSMUSG00000057554 Lgals8 ENSMUST00000135060 - NO_TRANSLATION retained_intron ENSMUSG00000057554 Lgals8 ENSMUST00000124888 ENSMUSP00000115094 TRANSLATION protein_coding - CCDS36592.1 1 316.0 18.0 7.582 16.9 248.8 0.0 -4,-5 1.0 10 21.604 PRINCIPAL:1 ENSMUSG00000057554 Lgals8 ENSMUST00000133143 - NO_TRANSLATION retained_intron ENSMUSG00000057554 Lgals8 ENSMUST00000152478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057554 Lgals8 ENSMUST00000099821 ENSMUSP00000097409 TRANSLATION protein_coding - CCDS36592.1 1 316.0 18.0 7.582 16.9 248.8 0.0 -4,-5 1.0 10 21.604 PRINCIPAL:1 ENSMUSG00000057554 Lgals8 ENSMUST00000143693 ENSMUSP00000118925 TRANSLATION protein_coding - CCDS70430.1 1 223.0 9.0 5.082 0.7 168.9 0.0 -4,-6 0.0045 8 1.812 MINOR ENSMUSG00000057554 Lgals8 ENSMUST00000155871 - NO_TRANSLATION retained_intron ENSMUSG00000057554 Lgals8 ENSMUST00000144283 ENSMUSP00000114200 TRANSLATION protein_coding - CCDS70431.1 5 325.0 18.0 7.78 10.4 248.8 0.0 -4,-5 0.9388 9 20.364 MINOR ENSMUSG00000057554 Lgals8 ENSMUST00000135166 ENSMUSP00000120210 TRANSLATION protein_coding - CCDS70430.1 1 223.0 9.0 5.082 0.7 168.9 0.0 -4,-6 0.0045 8 1.812 MINOR ENSMUSG00000061482 H4c4 ENSMUST00000102968 ENSMUSP00000100033 TRANSLATION protein_coding - CCDS26353.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021496 Pcbd2 ENSMUST00000124968 ENSMUSP00000115392 TRANSLATION protein_coding - - 1 103.0 8.0 2.75 36.2 111.1 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000021496 Pcbd2 ENSMUST00000021958 ENSMUSP00000021958 TRANSLATION protein_coding - CCDS26554.1 1 136.0 8.0 2.75 1.5 111.1 0.0 -2,2 0.3003 4 18.056 MINOR ENSMUSG00000101355 H3c10 ENSMUST00000188775 ENSMUSP00000140394 TRANSLATION protein_coding - CCDS26289.1 - 136.0 0.0 1.0 20.2 183.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021629 Slc30a5 ENSMUST00000225922 ENSMUSP00000153587 TRANSLATION protein_coding - - - 704.0 0.0 1.95 0.0 164.4 13.0 -4,-7 0.0805 5 12.0 MINOR ENSMUSG00000021629 Slc30a5 ENSMUST00000224177 - NO_TRANSLATION retained_intron ENSMUSG00000021629 Slc30a5 ENSMUST00000225129 - NO_TRANSLATION retained_intron ENSMUSG00000021629 Slc30a5 ENSMUST00000067246 ENSMUSP00000065764 TRANSLATION protein_coding - CCDS26739.1 1 761.0 0.0 1.95 4.4 164.4 14.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000021629 Slc30a5 ENSMUST00000225086 ENSMUSP00000153319 TRANSLATION nonsense_mediated_decay start - - 153.0 0.0 0.0 0.0 0.0 6.0 -2,-4 0.0025 - -2.0 MINOR ENSMUSG00000021482 Prxl2c ENSMUST00000221118 ENSMUSP00000152675 TRANSLATION protein_coding start - 2 111.0 0.0 3.33 0.0 45.0 0.0 -4,-2 0.0019 - -2.0 MINOR ENSMUSG00000021482 Prxl2c ENSMUST00000222570 ENSMUSP00000152323 TRANSLATION protein_coding - CCDS26599.1 1 226.0 0.0 3.561 4.0 73.9 0.0 -4,-1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000021482 Prxl2c ENSMUST00000221350 ENSMUSP00000152238 TRANSLATION protein_coding start - 3 93.0 0.0 2.83 0.0 31.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021482 Prxl2c ENSMUST00000222286 - NO_TRANSLATION retained_intron ENSMUSG00000021482 Prxl2c ENSMUST00000220895 ENSMUSP00000152062 TRANSLATION protein_coding - - 1 182.0 0.0 3.396 2.1 45.9 0.0 -4,-1 0.2421 2 10.13 MINOR ENSMUSG00000021482 Prxl2c ENSMUST00000221399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021482 Prxl2c ENSMUST00000021938 ENSMUSP00000021938 TRANSLATION protein_coding start - 1 172.0 0.0 2.731 0.0 60.7 0.0 -4,0 0.0003 2 -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000022040 ENSMUSP00000022040 TRANSLATION protein_coding - CCDS36686.1 1 1218.0 8.0 5.803 0.4 44.4 0.0 -4,-7 1.0 24 12.0 PRINCIPAL:2 ENSMUSG00000021557 Agtpbp1 ENSMUST00000151827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021557 Agtpbp1 ENSMUST00000169434 ENSMUSP00000131322 TRANSLATION protein_coding stop - 2 51.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000171606 ENSMUSP00000132697 TRANSLATION protein_coding - CCDS36687.1 1 789.0 0.0 1.4 0.0 0.0 0.0 -4,-7 0.0762 18 0.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000167096 ENSMUSP00000130030 TRANSLATION protein_coding - - 1 99.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 0.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000224397 ENSMUSP00000153569 TRANSLATION protein_coding start - - 226.0 6.0 2.14 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000165370 ENSMUSP00000131627 TRANSLATION protein_coding stop - 3 332.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0018 8 -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000225133 - NO_TRANSLATION retained_intron ENSMUSG00000021557 Agtpbp1 ENSMUST00000168141 ENSMUSP00000153638 TRANSLATION nonsense_mediated_decay start - 5 98.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000165851 ENSMUSP00000153032 TRANSLATION nonsense_mediated_decay start - 2 33.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000170378 ENSMUSP00000128552 TRANSLATION protein_coding - - 3 99.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 0.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000165598 ENSMUSP00000129846 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000163149 ENSMUSP00000126238 TRANSLATION protein_coding start - 5 685.0 0.0 1.4 0.0 0.0 0.0 -4,-6 0.0021 14 -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000166276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021557 Agtpbp1 ENSMUST00000165477 ENSMUSP00000127600 TRANSLATION nonsense_mediated_decay - - 2 246.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0011 - -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000167593 ENSMUSP00000129135 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000166585 ENSMUSP00000129686 TRANSLATION protein_coding stop - 5 103.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000109830 ENSMUSP00000105456 TRANSLATION protein_coding - CCDS36687.1 1 789.0 0.0 1.4 0.0 0.0 0.0 -4,-7 0.0762 18 0.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000169745 ENSMUSP00000132854 TRANSLATION nonsense_mediated_decay - - 1 246.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0011 7 -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000168821 ENSMUSP00000127460 TRANSLATION protein_coding - - 1 99.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 0.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000170555 ENSMUSP00000128589 TRANSLATION nonsense_mediated_decay - - 2 795.0 0.0 1.4 0.0 0.0 0.0 -4,-7 0.013 18 -2.0 MINOR ENSMUSG00000021557 Agtpbp1 ENSMUST00000163284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021557 Agtpbp1 ENSMUST00000164215 ENSMUSP00000130939 TRANSLATION protein_coding - CCDS70470.1 1 1174.0 8.0 5.803 0.1 44.4 0.0 -4,-7 0.5101 24 12.0 ALTERNATIVE:2 ENSMUSG00000021557 Agtpbp1 ENSMUST00000170520 ENSMUSP00000130037 TRANSLATION protein_coding stop - 5 86.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000056749 Nfil3 ENSMUST00000071065 ENSMUSP00000065363 TRANSLATION protein_coding - CCDS26519.1 1 462.0 0.0 0.2 21.1 676.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000072066 Zfp1008 ENSMUST00000223338 ENSMUSP00000152670 TRANSLATION protein_coding stop - 5 127.0 2.0 2.39 0.0 82.6 0.0 -4,-5 0.0147 - -2.0 MINOR ENSMUSG00000072066 Zfp1008 ENSMUST00000201563 ENSMUSP00000144207 TRANSLATION protein_coding - CCDS79202.1 1 106.0 0.0 1.64 0.0 82.6 0.0 -4,-5 0.9957 - 10.116 PRINCIPAL:1 ENSMUSG00000072066 Zfp1008 ENSMUST00000091563 ENSMUSP00000089151 TRANSLATION protein_coding start - 5 105.0 0.0 1.64 0.0 82.6 0.0 -4,-5 0.1651 - -2.0 MINOR ENSMUSG00000021706 Zfyve16 ENSMUST00000156586 - NO_TRANSLATION retained_intron ENSMUSG00000021706 Zfyve16 ENSMUST00000022217 ENSMUSP00000022217 TRANSLATION protein_coding - CCDS26682.1 1 1528.0 8.0 6.7225 0.0 613.9 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000021706 Zfyve16 ENSMUST00000154850 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021706 Zfyve16 ENSMUST00000136135 - NO_TRANSLATION retained_intron ENSMUSG00000069295 Vmn1r196 ENSMUST00000091735 ENSMUSP00000089329 TRANSLATION protein_coding - CCDS49219.1 - 301.0 0.0 0.0 0.3 115.6 10.0 -1,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000069295 Vmn1r196 ENSMUST00000226245 ENSMUSP00000154048 TRANSLATION protein_coding - - - 224.0 0.0 0.0 0.0 103.7 8.0 -4,-2 0.0119 - 0.0 MINOR ENSMUSG00000069295 Vmn1r196 ENSMUST00000228557 ENSMUSP00000154145 TRANSLATION protein_coding - CCDS49219.1 - 301.0 0.0 0.0 0.3 115.6 10.0 -1,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000069295 Vmn1r196 ENSMUST00000227516 ENSMUSP00000154355 TRANSLATION protein_coding - - - 116.0 0.0 0.0 0.0 51.6 6.0 -4,-7 0.0068 - 0.0 MINOR ENSMUSG00000069295 Vmn1r196 ENSMUST00000228382 ENSMUSP00000154358 TRANSLATION protein_coding - CCDS49219.1 - 301.0 0.0 0.0 0.3 115.6 10.0 -1,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000041236 Vps41 ENSMUST00000222102 - NO_TRANSLATION retained_intron ENSMUSG00000041236 Vps41 ENSMUST00000222813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041236 Vps41 ENSMUST00000222269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041236 Vps41 ENSMUST00000222010 - NO_TRANSLATION retained_intron ENSMUSG00000041236 Vps41 ENSMUST00000072961 ENSMUSP00000072729 TRANSLATION protein_coding - CCDS26257.1 1 853.0 8.0 21.5 22.2 94.4 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000056728 Ctsll3 ENSMUST00000223578 - NO_TRANSLATION retained_intron ENSMUSG00000056728 Ctsll3 ENSMUST00000043754 ENSMUSP00000036801 TRANSLATION protein_coding - CCDS36691.1 1 331.0 4.0 6.6 24.2 325.1 0.0 4,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000021552 Gkap1 ENSMUST00000225034 ENSMUSP00000153571 TRANSLATION protein_coding stop - - 72.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0132 1 -2.0 MINOR ENSMUSG00000021552 Gkap1 ENSMUST00000225098 ENSMUSP00000153655 TRANSLATION protein_coding start - - 136.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0113 1 -2.0 MINOR ENSMUSG00000021552 Gkap1 ENSMUST00000091579 ENSMUSP00000089169 TRANSLATION protein_coding - CCDS36684.1 1 366.0 0.0 0.0 14.9 0.0 0.0 -2,-5 1.0 8 4.0 PRINCIPAL:1 ENSMUSG00000021552 Gkap1 ENSMUST00000224505 ENSMUSP00000153405 TRANSLATION protein_coding stop - - 81.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0132 2 -2.0 MINOR ENSMUSG00000021552 Gkap1 ENSMUST00000224273 - NO_TRANSLATION retained_intron ENSMUSG00000021552 Gkap1 ENSMUST00000224114 - NO_TRANSLATION retained_intron ENSMUSG00000021552 Gkap1 ENSMUST00000223811 ENSMUSP00000153234 TRANSLATION protein_coding stop - - 67.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0132 1 -2.0 MINOR ENSMUSG00000069170 Adgrv1 ENSMUST00000109565 ENSMUSP00000105193 TRANSLATION protein_coding - - 1 2238.0 42.0 15.6 0.0 466.9 0.0 -4,-6 0.0728 - 0.0 MINOR ENSMUSG00000069170 Adgrv1 ENSMUST00000095585 ENSMUSP00000093245 TRANSLATION protein_coding - CCDS36737.1 1 6298.0 113.0 26.857 0.1 982.1 4.0 -1,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000069170 Adgrv1 ENSMUST00000129725 - NO_TRANSLATION retained_intron ENSMUSG00000069170 Adgrv1 ENSMUST00000125698 ENSMUSP00000120136 TRANSLATION nonsense_mediated_decay start - 1 533.0 10.0 1.99 0.0 81.5 0.0 -4,-5 0.0014 - -2.0 MINOR ENSMUSG00000069170 Adgrv1 ENSMUST00000126444 ENSMUSP00000123552 TRANSLATION protein_coding - - 1 1218.0 35.0 14.41 0.0 188.3 0.0 -1,-4 0.0164 - 0.0 MINOR ENSMUSG00000069170 Adgrv1 ENSMUST00000224088 ENSMUSP00000153419 TRANSLATION protein_coding - - - 318.0 0.0 0.78 0.0 22.6 4.0 -4,-5 0.0044 - 0.0 MINOR ENSMUSG00000069170 Adgrv1 ENSMUST00000132045 - NO_TRANSLATION retained_intron ENSMUSG00000069170 Adgrv1 ENSMUST00000146749 ENSMUSP00000114579 TRANSLATION protein_coding - - 1 416.0 21.0 2.41 0.0 80.1 0.0 -1,-4 0.0 - 0.0 MINOR ENSMUSG00000069170 Adgrv1 ENSMUST00000125663 - NO_TRANSLATION retained_intron ENSMUSG00000069170 Adgrv1 ENSMUST00000128120 ENSMUSP00000122358 TRANSLATION protein_coding - - 1 318.0 0.0 0.78 0.0 22.6 4.0 -4,-5 0.0044 - 0.0 MINOR ENSMUSG00000069170 Adgrv1 ENSMUST00000156627 - NO_TRANSLATION retained_intron ENSMUSG00000069170 Adgrv1 ENSMUST00000156631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069170 Adgrv1 ENSMUST00000146141 - NO_TRANSLATION retained_intron ENSMUSG00000069170 Adgrv1 ENSMUST00000128585 ENSMUSP00000121899 TRANSLATION protein_coding - - 1 616.0 21.0 4.41 0.0 94.3 0.0 -1,-4 0.0 - 0.0 MINOR ENSMUSG00000021506 Pitx1 ENSMUST00000021968 ENSMUSP00000021968 TRANSLATION protein_coding - CCDS26556.1 1 315.0 0.0 1.33 6.8 107.7 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000021506 Pitx1 ENSMUST00000173618 ENSMUSP00000134609 TRANSLATION protein_coding stop - 3 123.0 0.0 1.0 0.0 36.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000049806 Or9s18 ENSMUST00000058907 ENSMUSP00000062692 TRANSLATION protein_coding - CCDS26604.1 - 308.0 0.0 1.0 5.8 158.0 4.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049806 Or9s18 ENSMUST00000214214 ENSMUSP00000149328 TRANSLATION protein_coding - CCDS26604.1 5 308.0 0.0 1.0 5.8 158.0 4.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000021385 Ippk ENSMUST00000021817 ENSMUSP00000021817 TRANSLATION protein_coding - - 1 538.0 23.0 7.88 0.0 298.9 0.0 -3,-1 0.0041 - 10.23 MINOR ENSMUSG00000021385 Ippk ENSMUST00000220447 ENSMUSP00000152331 TRANSLATION protein_coding - CCDS26500.1 1 489.0 31.0 8.63 19.2 314.5 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000021385 Ippk ENSMUST00000220856 ENSMUSP00000152655 TRANSLATION nonsense_mediated_decay - - 1 68.0 8.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057069 Ero1b ENSMUST00000221560 ENSMUSP00000152393 TRANSLATION protein_coding - - 1 493.0 18.0 6.01 0.0 415.5 0.0 1,-3 0.0254 12 16.452 MINOR ENSMUSG00000057069 Ero1b ENSMUST00000221739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057069 Ero1b ENSMUST00000220811 ENSMUSP00000152543 TRANSLATION protein_coding - - 1 485.0 18.0 6.17 0.0 415.7 0.0 1,-3 0.0482 12 16.788 MINOR ENSMUSG00000057069 Ero1b ENSMUST00000071973 ENSMUSP00000071864 TRANSLATION protein_coding - CCDS36594.1 1 467.0 18.0 6.51 9.4 424.6 0.0 1,-3 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000021573 Tppp ENSMUST00000022057 ENSMUSP00000022057 TRANSLATION protein_coding - CCDS26638.1 1 218.0 0.0 3.0 17.3 224.0 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000021573 Tppp ENSMUST00000140217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021518 Ptdss1 ENSMUST00000225024 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021518 Ptdss1 ENSMUST00000224290 ENSMUSP00000153371 TRANSLATION nonsense_mediated_decay - - - 106.0 0.0 0.88 0.0 0.0 4.0 -4,-7 0.0023 1 -2.0 MINOR ENSMUSG00000021518 Ptdss1 ENSMUST00000224244 ENSMUSP00000153610 TRANSLATION nonsense_mediated_decay - - - 95.0 0.0 0.0 0.0 0.0 3.0 -4,-2 0.0002 1 -2.0 MINOR ENSMUSG00000021518 Ptdss1 ENSMUST00000021990 ENSMUSP00000021990 TRANSLATION protein_coding - CCDS26612.1 1 473.0 0.0 4.428 18.7 354.4 10.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000021518 Ptdss1 ENSMUST00000225347 ENSMUSP00000153296 TRANSLATION nonsense_mediated_decay start - - 51.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021518 Ptdss1 ENSMUST00000224175 - NO_TRANSLATION retained_intron ENSMUSG00000060093 H4c1 ENSMUST00000102964 ENSMUSP00000100029 TRANSLATION protein_coding - CCDS26367.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000015396 Cd83 ENSMUST00000015540 ENSMUSP00000015540 TRANSLATION protein_coding - CCDS26481.1 1 196.0 0.0 0.5 1.1 28.3 0.0 2,-1 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000015396 Cd83 ENSMUST00000221359 - NO_TRANSLATION retained_intron ENSMUSG00000095609 Gm21188 ENSMUST00000224713 ENSMUSP00000153701 TRANSLATION protein_coding - CCDS79248.1 - 190.0 0.0 0.0 0.0 214.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095609 Gm21188 ENSMUST00000225638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095609 Gm21188 ENSMUST00000224147 - NO_TRANSLATION retained_intron ENSMUSG00000038518 Jarid2 ENSMUST00000174086 ENSMUSP00000133812 TRANSLATION protein_coding stop - 5 23.0 0.0 0.165 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000038518 Jarid2 ENSMUST00000172924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038518 Jarid2 ENSMUST00000173704 ENSMUSP00000134675 TRANSLATION protein_coding - CCDS36646.1 1 1234.0 0.0 5.685 1.5 250.2 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000038518 Jarid2 ENSMUST00000172708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038518 Jarid2 ENSMUST00000174394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038518 Jarid2 ENSMUST00000173906 ENSMUSP00000134630 TRANSLATION protein_coding stop - 1 1029.0 0.0 4.725 0.0 217.3 0.0 -4,-6 0.0323 6 -2.0 MINOR ENSMUSG00000038518 Jarid2 ENSMUST00000174683 - NO_TRANSLATION retained_intron ENSMUSG00000038518 Jarid2 ENSMUST00000044608 ENSMUSP00000037774 TRANSLATION protein_coding - CCDS36646.1 1 1234.0 0.0 5.685 1.5 250.2 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000038518 Jarid2 ENSMUST00000173246 ENSMUSP00000134205 TRANSLATION protein_coding - CCDS36646.1 1 1234.0 0.0 5.685 1.5 250.2 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000038518 Jarid2 ENSMUST00000172830 ENSMUSP00000133653 TRANSLATION protein_coding stop - 3 58.0 0.0 1.165 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038518 Jarid2 ENSMUST00000172977 ENSMUSP00000134276 TRANSLATION nonsense_mediated_decay - - 5 82.0 0.0 1.165 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038518 Jarid2 ENSMUST00000174557 - NO_TRANSLATION retained_intron ENSMUSG00000038518 Jarid2 ENSMUST00000174068 ENSMUSP00000134593 TRANSLATION protein_coding stop - 5 80.0 0.0 1.165 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038518 Jarid2 ENSMUST00000173003 ENSMUSP00000134302 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038518 Jarid2 ENSMUST00000172581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038518 Jarid2 ENSMUST00000173367 ENSMUSP00000134658 TRANSLATION protein_coding stop - 5 507.0 0.0 0.0 0.0 49.4 0.0 -4,-6 0.0029 4 -2.0 MINOR ENSMUSG00000053101 Gpr141 ENSMUST00000065335 ENSMUSP00000066921 TRANSLATION protein_coding - CCDS26264.1 1 305.0 0.0 0.82 9.0 34.4 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053101 Gpr141 ENSMUST00000222772 - NO_TRANSLATION retained_intron ENSMUSG00000053101 Gpr141 ENSMUST00000222664 ENSMUSP00000152482 TRANSLATION protein_coding stop - 2 113.0 0.0 0.5 0.0 0.0 2.0 -4,-6 0.0017 - -2.0 MINOR ENSMUSG00000053101 Gpr141 ENSMUST00000221268 - NO_TRANSLATION retained_intron ENSMUSG00000021668 Polk ENSMUST00000222268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021668 Polk ENSMUST00000220977 ENSMUSP00000152322 TRANSLATION nonsense_mediated_decay - - 1 453.0 8.0 9.41 0.0 182.6 0.0 -4,-5 0.001 1 -2.0 MINOR ENSMUSG00000021668 Polk ENSMUST00000221899 ENSMUSP00000152647 TRANSLATION protein_coding - - 1 772.0 8.0 10.11 0.0 196.7 0.0 -4,-5 0.027 5 15.996 MINOR ENSMUSG00000021668 Polk ENSMUST00000222389 ENSMUSP00000152192 TRANSLATION protein_coding - - 1 467.0 8.0 9.91 0.0 185.0 0.0 -4,-5 0.0052 3 14.892 MINOR ENSMUSG00000021668 Polk ENSMUST00000222075 ENSMUSP00000152139 TRANSLATION nonsense_mediated_decay - - 1 237.0 6.0 5.33 0.0 118.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021668 Polk ENSMUST00000223475 ENSMUSP00000152658 TRANSLATION protein_coding stop - 5 169.0 2.0 4.0 0.0 74.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021668 Polk ENSMUST00000022172 ENSMUSP00000022172 TRANSLATION protein_coding - CCDS26704.1 1 852.0 8.0 10.44 0.4 219.1 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000021668 Polk ENSMUST00000091387 ENSMUSP00000088950 TRANSLATION protein_coding - CCDS84053.1 1 793.0 8.0 10.14 0.0 187.4 0.0 -4,-5 0.1461 5 15.498 MINOR ENSMUSG00000021668 Polk ENSMUST00000222100 - NO_TRANSLATION retained_intron ENSMUSG00000021668 Polk ENSMUST00000221645 ENSMUSP00000152178 TRANSLATION protein_coding - - 1 547.0 8.0 10.24 0.0 207.4 0.0 -4,-5 0.0477 4 16.896 MINOR ENSMUSG00000021668 Polk ENSMUST00000222143 ENSMUSP00000152468 TRANSLATION nonsense_mediated_decay - - 1 275.0 8.0 6.33 0.0 130.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000113255 Tes3-ps ENSMUST00000222404 ENSMUSP00000152773 TRANSLATION protein_coding - - - 259.0 0.0 1.0 31.9 168.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021680 Crhbp ENSMUST00000221025 ENSMUSP00000152083 TRANSLATION protein_coding - CCDS26698.1 1 322.0 0.0 0.0 26.3 584.2 0.0 0,-3 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000021680 Crhbp ENSMUST00000045583 ENSMUSP00000042578 TRANSLATION protein_coding - - 1 329.0 0.0 0.0 21.1 576.6 0.0 0,-3 0.7581 4 8.72 MINOR ENSMUSG00000021639 Gtf2h2 ENSMUST00000145266 ENSMUSP00000138108 TRANSLATION nonsense_mediated_decay - - 1 398.0 15.0 11.83 15.9 361.2 0.0 -4,-5 0.7988 8 -2.0 MINOR ENSMUSG00000021639 Gtf2h2 ENSMUST00000066940 - NO_TRANSLATION retained_intron ENSMUSG00000021639 Gtf2h2 ENSMUST00000142182 - NO_TRANSLATION retained_intron ENSMUSG00000021639 Gtf2h2 ENSMUST00000124644 - NO_TRANSLATION retained_intron ENSMUSG00000021639 Gtf2h2 ENSMUST00000152049 - NO_TRANSLATION retained_intron ENSMUSG00000021639 Gtf2h2 ENSMUST00000066984 ENSMUSP00000065228 TRANSLATION protein_coding - CCDS26730.1 1 396.0 15.0 11.83 23.9 361.2 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000021639 Gtf2h2 ENSMUST00000124698 - NO_TRANSLATION retained_intron ENSMUSG00000021639 Gtf2h2 ENSMUST00000232450 ENSMUSP00000156100 TRANSLATION protein_coding start - - 120.0 15.0 3.5 0.0 42.3 0.0 -3,-4 0.0005 2 -2.0 MINOR ENSMUSG00000021639 Gtf2h2 ENSMUST00000134842 ENSMUSP00000138748 TRANSLATION nonsense_mediated_decay - - 1 159.0 0.0 3.5 0.0 86.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021639 Gtf2h2 ENSMUST00000232447 - NO_TRANSLATION retained_intron ENSMUSG00000021639 Gtf2h2 ENSMUST00000231227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021639 Gtf2h2 ENSMUST00000147229 - NO_TRANSLATION retained_intron ENSMUSG00000054931 Zkscan4 ENSMUST00000248787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054931 Zkscan4 ENSMUST00000062609 ENSMUSP00000054604 TRANSLATION protein_coding - CCDS26277.1 2 480.0 28.0 0.96 0.1 309.6 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000054931 Zkscan4 ENSMUST00000249089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054931 Zkscan4 ENSMUST00000225845 ENSMUSP00000153278 TRANSLATION protein_coding - - - 451.0 28.0 0.96 0.0 280.3 0.0 -4,-5 0.1024 1 16.242 MINOR ENSMUSG00000012429 Mplkip ENSMUST00000221480 ENSMUSP00000152130 TRANSLATION protein_coding - - 5 48.0 0.0 0.6 0.0 73.4 0.0 -4,-5 0.0202 - 11.742 MINOR ENSMUSG00000012429 Mplkip ENSMUST00000222292 - NO_TRANSLATION retained_intron ENSMUSG00000012429 Mplkip ENSMUST00000049744 ENSMUSP00000059154 TRANSLATION protein_coding - CCDS26253.1 1 178.0 0.0 0.6 3.4 76.7 0.0 -4,-6 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000062342 Serpinb9e ENSMUST00000071873 ENSMUSP00000071769 TRANSLATION protein_coding - CCDS26435.1 1 377.0 0.0 4.8 12.5 418.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000000078 Klf6 ENSMUST00000221734 - NO_TRANSLATION retained_intron ENSMUSG00000000078 Klf6 ENSMUST00000222857 ENSMUSP00000152088 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000000078 Klf6 ENSMUST00000000080 ENSMUSP00000000080 TRANSLATION protein_coding - CCDS26229.1 1 318.0 12.0 1.9 2.7 60.8 0.0 -4,-7 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000007617 Homer1 ENSMUST00000109497 ENSMUSP00000105123 TRANSLATION protein_coding - - 5 180.0 0.0 2.65 0.0 0.0 0.0 -4,-5 0.0 9 0.0 MINOR ENSMUSG00000007617 Homer1 ENSMUST00000109496 ENSMUSP00000105122 TRANSLATION protein_coding - - 5 224.0 8.0 4.15 1.0 140.8 0.0 -4,-6 0.0763 11 15.0 MINOR ENSMUSG00000007617 Homer1 ENSMUST00000109492 ENSMUSP00000105118 TRANSLATION protein_coding - CCDS84048.1 1 203.0 8.0 3.0 0.0 120.6 0.0 -4,-6 0.0168 6 11.49 MINOR ENSMUSG00000007617 Homer1 ENSMUST00000220609 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007617 Homer1 ENSMUST00000109495 ENSMUSP00000105121 TRANSLATION protein_coding - - 5 191.0 8.0 3.0 0.0 120.6 0.0 -4,-6 0.0036 6 11.49 MINOR ENSMUSG00000007617 Homer1 ENSMUST00000079086 ENSMUSP00000078093 TRANSLATION protein_coding - CCDS36746.1 1 370.0 8.0 5.65 0.0 119.2 0.0 -4,-2 0.1424 16 16.704 MINOR ENSMUSG00000007617 Homer1 ENSMUST00000060490 ENSMUSP00000050471 TRANSLATION protein_coding - CCDS70484.1 1 354.0 8.0 5.65 30.7 120.6 0.0 -4,-6 1.0 16 20.788 PRINCIPAL:1 ENSMUSG00000007617 Homer1 ENSMUST00000109498 ENSMUSP00000105124 TRANSLATION protein_coding - - 5 192.0 0.0 2.65 0.0 0.0 0.0 -4,-6 0.0 9 0.0 MINOR ENSMUSG00000007617 Homer1 ENSMUST00000102752 ENSMUSP00000099813 TRANSLATION protein_coding - CCDS26687.1 1 186.0 8.0 3.0 0.0 120.6 0.0 -4,-6 0.0155 6 11.49 MINOR ENSMUSG00000007617 Homer1 ENSMUST00000080127 ENSMUSP00000079026 TRANSLATION protein_coding - CCDS36745.1 1 366.0 8.0 5.65 3.4 120.6 0.0 -4,-6 0.2981 16 17.112 MINOR ENSMUSG00000007617 Homer1 ENSMUST00000109493 ENSMUSP00000105119 TRANSLATION protein_coding - - 5 233.0 8.0 3.0 0.0 120.6 0.0 -4,-6 0.0036 6 11.49 MINOR ENSMUSG00000007617 Homer1 ENSMUST00000109494 ENSMUSP00000105120 TRANSLATION protein_coding - - 1 193.0 8.0 3.0 0.0 120.6 0.0 -4,-6 0.0036 7 11.49 MINOR ENSMUSG00000058093 Zfp729b ENSMUST00000223599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058093 Zfp729b ENSMUST00000138725 ENSMUSP00000115783 TRANSLATION protein_coding stop - 3 248.0 16.0 1.32 0.0 155.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058093 Zfp729b ENSMUST00000012873 ENSMUSP00000012873 TRANSLATION protein_coding - CCDS56892.1 1 1045.0 120.0 1.72 0.0 542.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000062705 Tpbpb ENSMUST00000223698 ENSMUSP00000153438 TRANSLATION protein_coding - CCDS36692.1 - 121.0 0.0 0.0 0.1 0.0 0.0 4,-1 0.9444 - 0.0 PRINCIPAL:2 ENSMUSG00000062705 Tpbpb ENSMUST00000223978 ENSMUSP00000153262 TRANSLATION protein_coding - - - 120.0 0.0 0.0 0.1 0.0 0.0 4,-1 0.268 - 0.0 ALTERNATIVE:2 ENSMUSG00000062705 Tpbpb ENSMUST00000080766 ENSMUSP00000079588 TRANSLATION protein_coding - CCDS36692.1 1 121.0 0.0 0.0 0.1 0.0 0.0 4,-1 0.9444 - 0.0 PRINCIPAL:2 ENSMUSG00000045312 Lhfpl2 ENSMUST00000054274 ENSMUSP00000062239 TRANSLATION protein_coding - CCDS26692.1 1 222.0 0.0 1.2 23.8 190.7 5.0 2,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000045312 Lhfpl2 ENSMUST00000120051 ENSMUSP00000113786 TRANSLATION protein_coding stop - 5 34.0 0.0 0.25 0.0 28.0 1.0 2,-3 0.0028 - -2.0 MINOR ENSMUSG00000045312 Lhfpl2 ENSMUST00000156071 ENSMUSP00000117113 TRANSLATION protein_coding stop - 3 139.0 0.0 0.8 0.0 114.0 3.0 2,-3 0.0029 2 -2.0 MINOR ENSMUSG00000045312 Lhfpl2 ENSMUST00000131595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045312 Lhfpl2 ENSMUST00000121618 ENSMUSP00000113468 TRANSLATION protein_coding - CCDS26692.1 1 222.0 0.0 1.2 23.8 190.7 5.0 2,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000045312 Lhfpl2 ENSMUST00000221096 ENSMUSP00000152453 TRANSLATION protein_coding stop - 3 19.0 0.0 0.25 0.0 0.0 0.0 -2,-7 0.0 - -2.0 MINOR ENSMUSG00000045312 Lhfpl2 ENSMUST00000223423 ENSMUSP00000152241 TRANSLATION protein_coding stop - 3 141.0 0.0 0.8 0.0 114.6 3.0 2,-3 0.0029 2 -2.0 MINOR ENSMUSG00000045312 Lhfpl2 ENSMUST00000144838 - NO_TRANSLATION retained_intron ENSMUSG00000045312 Lhfpl2 ENSMUST00000118195 ENSMUSP00000112655 TRANSLATION protein_coding - CCDS26692.1 1 222.0 0.0 1.2 23.8 190.7 5.0 2,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021690 Jmy ENSMUST00000065537 ENSMUSP00000070339 TRANSLATION protein_coding - CCDS26688.1 1 983.0 0.0 1.3 0.1 659.8 0.0 -4,-5 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000021690 Jmy ENSMUST00000220513 ENSMUSP00000152402 TRANSLATION protein_coding - - 1 446.0 0.0 0.0 0.0 453.0 0.0 -4,-5 0.0011 6 0.0 MINOR ENSMUSG00000036083 Slc17a3 ENSMUST00000166467 ENSMUSP00000131308 TRANSLATION protein_coding - CCDS26371.1 5 498.0 0.0 5.75 4.7 156.2 14.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000036083 Slc17a3 ENSMUST00000225076 - NO_TRANSLATION retained_intron ENSMUSG00000036083 Slc17a3 ENSMUST00000110422 ENSMUSP00000106052 TRANSLATION protein_coding - CCDS49220.1 5 462.0 0.0 5.75 0.1 156.2 14.0 -4,-6 0.3366 3 12.0 MINOR ENSMUSG00000036083 Slc17a3 ENSMUST00000039721 ENSMUSP00000039062 TRANSLATION protein_coding - CCDS26371.1 1 498.0 0.0 5.75 4.7 156.2 14.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000036083 Slc17a3 ENSMUST00000091698 ENSMUSP00000089290 TRANSLATION protein_coding - - 5 420.0 0.0 5.15 1.1 84.3 13.0 -4,-5 0.0401 3 6.54 MINOR ENSMUSG00000090658 Prss47 ENSMUST00000203968 ENSMUSP00000145196 TRANSLATION protein_coding - - 5 395.0 6.0 3.0 0.0 210.8 0.0 -2,-4 0.7646 - 14.0 PRINCIPAL:2 ENSMUSG00000090658 Prss47 ENSMUST00000220767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090658 Prss47 ENSMUST00000222769 ENSMUSP00000152310 TRANSLATION protein_coding - - 5 301.0 6.0 2.7 0.0 210.8 0.0 -4,-7 0.0192 - 13.4 ALTERNATIVE:2 ENSMUSG00000094237 AF067063 ENSMUST00000179455 ENSMUSP00000136704 TRANSLATION protein_coding - CCDS56904.1 - 163.0 0.0 0.0 0.0 289.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094237 AF067063 ENSMUST00000195234 ENSMUSP00000141964 TRANSLATION protein_coding - CCDS56904.1 1 163.0 0.0 0.0 0.0 289.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069272 H2ac8 ENSMUST00000102969 ENSMUSP00000100034 TRANSLATION protein_coding - CCDS26348.1 - 130.0 0.0 1.0 11.0 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062382 Ftl1-ps1 ENSMUST00000222435 ENSMUSP00000152609 TRANSLATION protein_coding - - - 183.0 9.0 2.0 14.5 104.2 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000062382 Ftl1-ps1 ENSMUST00000221435 ENSMUSP00000152633 TRANSLATION protein_coding stop - 3 30.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042015 Wdr41 ENSMUST00000160801 ENSMUSP00000124033 TRANSLATION protein_coding - CCDS56896.2 5 460.0 0.0 8.2 11.6 33.6 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000042015 Wdr41 ENSMUST00000160115 ENSMUSP00000138543 TRANSLATION protein_coding - - 5 467.0 0.0 5.6 0.0 17.0 0.0 -4,-5 0.0297 3 3.834 MINOR ENSMUSG00000042015 Wdr41 ENSMUST00000159647 ENSMUSP00000138501 TRANSLATION protein_coding - - 5 329.0 0.0 5.6 0.0 17.0 0.0 -4,-5 0.0015 3 3.834 MINOR ENSMUSG00000042015 Wdr41 ENSMUST00000223422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042015 Wdr41 ENSMUST00000222948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042015 Wdr41 ENSMUST00000160409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042284 Itga1 ENSMUST00000224493 - NO_TRANSLATION retained_intron ENSMUSG00000042284 Itga1 ENSMUST00000224541 - NO_TRANSLATION retained_intron ENSMUSG00000042284 Itga1 ENSMUST00000224119 - NO_TRANSLATION retained_intron ENSMUSG00000042284 Itga1 ENSMUST00000224268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042284 Itga1 ENSMUST00000224865 - NO_TRANSLATION retained_intron ENSMUSG00000042284 Itga1 ENSMUST00000061673 ENSMUSP00000077132 TRANSLATION protein_coding - CCDS36788.1 1 1179.0 13.0 12.431 10.7 402.8 0.0 0,-4 1.0 29 21.0 PRINCIPAL:1 ENSMUSG00000021457 Syk ENSMUST00000118756 ENSMUSP00000112914 TRANSLATION protein_coding - - 1 583.0 3.0 8.948 0.0 426.0 0.0 -4,-5 0.0055 12 12.648 MINOR ENSMUSG00000021457 Syk ENSMUST00000055087 ENSMUSP00000060828 TRANSLATION protein_coding - CCDS26517.1 1 629.0 3.0 9.698 6.3 440.2 0.0 -4,-5 1.0 13 17.0 PRINCIPAL:1 ENSMUSG00000021457 Syk ENSMUST00000150672 - NO_TRANSLATION retained_intron ENSMUSG00000021457 Syk ENSMUST00000120135 ENSMUSP00000113852 TRANSLATION protein_coding - CCDS26517.1 1 629.0 3.0 9.698 6.3 440.2 0.0 -4,-5 1.0 13 17.0 PRINCIPAL:1 ENSMUSG00000021457 Syk ENSMUST00000140339 - NO_TRANSLATION retained_intron ENSMUSG00000079092 Prl2c2 ENSMUST00000110594 ENSMUSP00000106224 TRANSLATION protein_coding - CCDS36596.1 1 224.0 0.0 2.7 0.1 246.8 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079092 Prl2c2 ENSMUST00000220558 ENSMUSP00000152202 TRANSLATION protein_coding stop - 5 117.0 0.0 1.55 0.0 112.6 0.0 2,-3 0.0 - -2.0 MINOR ENSMUSG00000079092 Prl2c2 ENSMUST00000221627 ENSMUSP00000152254 TRANSLATION protein_coding stop - 3 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079092 Prl2c2 ENSMUST00000223124 - NO_TRANSLATION retained_intron ENSMUSG00000079092 Prl2c2 ENSMUST00000221612 ENSMUSP00000152538 TRANSLATION protein_coding - - 1 188.0 0.0 1.9 0.0 187.3 0.0 3,-2 0.0041 - 6.654 MINOR ENSMUSG00000021607 Mrpl36 ENSMUST00000222030 ENSMUSP00000152607 TRANSLATION protein_coding - CCDS26631.1 3 102.0 0.0 0.6 3.1 60.5 0.0 -4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000021607 Mrpl36 ENSMUST00000221730 ENSMUSP00000152226 TRANSLATION protein_coding - CCDS26631.1 3 102.0 0.0 0.6 3.1 60.5 0.0 -4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000021607 Mrpl36 ENSMUST00000022098 ENSMUSP00000022098 TRANSLATION protein_coding - CCDS26631.1 1 102.0 0.0 0.6 3.1 60.5 0.0 -4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000108674 Or2b2 ENSMUST00000077843 ENSMUSP00000077010 TRANSLATION protein_coding - CCDS26286.1 - 313.0 0.0 1.0 9.2 186.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108674 Or2b2 ENSMUST00000214435 ENSMUSP00000150106 TRANSLATION protein_coding - CCDS26286.1 2 313.0 0.0 1.0 9.2 186.0 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108674 Or2b2 ENSMUST00000214006 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094918 Gm8765 ENSMUST00000099518 ENSMUSP00000097118 TRANSLATION protein_coding - CCDS70456.1 1 1017.0 0.0 1.0 0.0 49.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021371 Mcur1 ENSMUST00000021800 ENSMUSP00000021800 TRANSLATION protein_coding - CCDS36645.1 1 340.0 0.0 5.65 0.4 184.7 0.0 -4,-7 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000021371 Mcur1 ENSMUST00000223353 - NO_TRANSLATION retained_intron ENSMUSG00000021371 Mcur1 ENSMUST00000223347 - NO_TRANSLATION retained_intron ENSMUSG00000021453 Gadd45g ENSMUST00000132480 - NO_TRANSLATION retained_intron ENSMUSG00000021453 Gadd45g ENSMUST00000021903 ENSMUSP00000021903 TRANSLATION protein_coding - CCDS26515.1 1 159.0 0.0 3.4 34.9 46.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000033063 Cntnap3 ENSMUST00000091554 ENSMUSP00000089140 TRANSLATION protein_coding - CCDS36703.1 5 1287.0 0.0 5.186 1.3 355.7 0.0 3,-2 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000033063 Cntnap3 ENSMUST00000222618 - NO_TRANSLATION retained_intron ENSMUSG00000078139 AK157302 ENSMUST00000104942 ENSMUSP00000100547 TRANSLATION protein_coding - - - 129.0 4.0 1.0 30.4 0.0 0.0 -4,0 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000021704 Mtx3 ENSMUST00000224368 ENSMUSP00000153602 TRANSLATION nonsense_mediated_decay start - - 68.0 0.0 1.5 0.0 26.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021704 Mtx3 ENSMUST00000076169 ENSMUSP00000075526 TRANSLATION protein_coding - CCDS49328.1 5 312.0 0.0 5.75 17.6 188.7 0.0 -3,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000021704 Mtx3 ENSMUST00000223719 - NO_TRANSLATION retained_intron ENSMUSG00000033122 Hsd17b3 ENSMUST00000166224 ENSMUSP00000132011 TRANSLATION protein_coding - CCDS26594.1 2 305.0 31.0 8.75 0.4 159.5 0.0 0,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033122 Hsd17b3 ENSMUST00000222810 ENSMUSP00000152274 TRANSLATION protein_coding stop - 3 193.0 23.0 5.375 0.0 86.8 0.0 0,-3 0.0021 - -2.0 MINOR ENSMUSG00000033122 Hsd17b3 ENSMUST00000222783 ENSMUSP00000152848 TRANSLATION protein_coding - CCDS26594.1 5 305.0 31.0 8.75 0.4 159.5 0.0 0,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033122 Hsd17b3 ENSMUST00000221513 ENSMUSP00000152478 TRANSLATION protein_coding start - 5 123.0 10.0 3.25 0.0 40.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000059395 Nkapl ENSMUST00000068235 ENSMUSP00000065168 TRANSLATION protein_coding - CCDS26276.1 - 395.0 0.0 0.4 0.4 167.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021368 Tbc1d7 ENSMUST00000223076 - NO_TRANSLATION retained_intron ENSMUSG00000021368 Tbc1d7 ENSMUST00000223000 ENSMUSP00000152737 TRANSLATION protein_coding start - 3 192.0 0.0 3.75 0.0 36.4 0.0 -4,-5 0.0011 2 -2.0 MINOR ENSMUSG00000021368 Tbc1d7 ENSMUST00000220579 ENSMUSP00000152072 TRANSLATION protein_coding start - 5 74.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021368 Tbc1d7 ENSMUST00000220787 ENSMUSP00000152358 TRANSLATION protein_coding - - 1 255.0 0.0 6.54 0.0 28.4 0.0 -4,-5 0.0011 6 8.178 MINOR ENSMUSG00000021368 Tbc1d7 ENSMUST00000179852 ENSMUSP00000137280 TRANSLATION protein_coding - CCDS26476.1 1 293.0 0.0 7.79 36.2 36.4 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000021368 Tbc1d7 ENSMUST00000221352 ENSMUSP00000152443 TRANSLATION nonsense_mediated_decay - - 5 74.0 0.0 1.55 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021368 Tbc1d7 ENSMUST00000221095 - NO_TRANSLATION retained_intron ENSMUSG00000021368 Tbc1d7 ENSMUST00000221795 ENSMUSP00000152162 TRANSLATION nonsense_mediated_decay - - 3 58.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021368 Tbc1d7 ENSMUST00000222160 ENSMUSP00000152208 TRANSLATION protein_coding stop - 5 242.0 0.0 6.21 0.0 31.7 0.0 -4,-5 0.008 6 -2.0 MINOR ENSMUSG00000021368 Tbc1d7 ENSMUST00000021797 ENSMUSP00000021797 TRANSLATION protein_coding - CCDS26476.1 1 293.0 0.0 7.79 36.2 36.4 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000056457 Prl2c3 ENSMUST00000222139 ENSMUSP00000152614 TRANSLATION protein_coding stop - 2 159.0 0.0 2.35 0.0 168.1 0.0 2,-3 0.0004 - -2.0 MINOR ENSMUSG00000056457 Prl2c3 ENSMUST00000099805 ENSMUSP00000097393 TRANSLATION protein_coding - CCDS36595.1 1 224.0 0.0 2.75 0.1 246.5 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000056457 Prl2c3 ENSMUST00000222621 - NO_TRANSLATION retained_intron ENSMUSG00000056457 Prl2c3 ENSMUST00000223180 - NO_TRANSLATION retained_intron ENSMUSG00000056457 Prl2c3 ENSMUST00000223098 ENSMUSP00000152309 TRANSLATION protein_coding stop - 3 132.0 0.0 1.75 0.0 124.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003992 Ssbp2 ENSMUST00000042122 ENSMUSP00000037115 TRANSLATION protein_coding - CCDS26676.1 1 331.0 0.0 3.0 15.5 216.3 0.0 -4,-7 0.7271 3 13.176 MINOR ENSMUSG00000003992 Ssbp2 ENSMUST00000144659 - NO_TRANSLATION retained_intron ENSMUSG00000003992 Ssbp2 ENSMUST00000133984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003992 Ssbp2 ENSMUST00000137493 - NO_TRANSLATION retained_intron ENSMUSG00000003992 Ssbp2 ENSMUST00000138488 ENSMUSP00000115548 TRANSLATION nonsense_mediated_decay - - 3 49.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000003992 Ssbp2 ENSMUST00000137658 - NO_TRANSLATION retained_intron ENSMUSG00000003992 Ssbp2 ENSMUST00000231481 ENSMUSP00000156076 TRANSLATION protein_coding stop - - 244.0 0.0 3.4 0.0 93.9 0.0 -4,-7 0.0143 2 -2.0 MINOR ENSMUSG00000003992 Ssbp2 ENSMUST00000004094 ENSMUSP00000004094 TRANSLATION protein_coding - CCDS26677.1 1 361.0 0.0 3.4 29.1 217.8 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000003992 Ssbp2 ENSMUST00000156547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003992 Ssbp2 ENSMUST00000141381 - NO_TRANSLATION retained_intron ENSMUSG00000100235 Gm28557 ENSMUST00000185856 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000100235 Gm28557 ENSMUST00000186303 ENSMUSP00000140296 TRANSLATION nonsense_mediated_decay,RT - - 2 336.0 38.0 1.2 0.0 205.6 0.0 -4,-7 0.8071 - -2.0 PRINCIPAL:1 ENSMUSG00000100235 Gm28557 ENSMUST00000187652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000100235 Gm28557 ENSMUST00000185954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000100235 Gm28557 ENSMUST00000225558 - NO_TRANSLATION retained_intron ENSMUSG00000006179 Prss16 ENSMUST00000006341 ENSMUSP00000006341 TRANSLATION protein_coding - CCDS26303.1 1 509.0 0.0 9.55 1.3 512.3 0.0 2,-3 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000006179 Prss16 ENSMUST00000150547 ENSMUSP00000152943 TRANSLATION protein_coding - - 3 169.0 0.0 3.5 0.0 181.6 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000006179 Prss16 ENSMUST00000223857 - NO_TRANSLATION retained_intron ENSMUSG00000006179 Prss16 ENSMUST00000130585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006179 Prss16 ENSMUST00000129665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000097333 Zfp87 ENSMUST00000181341 ENSMUSP00000137689 TRANSLATION protein_coding - - 3 81.0 0.0 1.8 1.0 87.9 0.0 -4,-5 0.0092 - 3.858 MINOR ENSMUSG00000097333 Zfp87 ENSMUST00000181767 ENSMUSP00000138087 TRANSLATION protein_coding - CCDS59588.1 1 540.0 60.0 2.8 0.4 430.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000097333 Zfp87 ENSMUST00000181573 ENSMUSP00000138011 TRANSLATION protein_coding - - 1 51.0 0.0 1.066 0.0 87.9 0.0 -4,-5 0.0 - 2.286 MINOR ENSMUSG00000097333 Zfp87 ENSMUST00000180536 ENSMUSP00000137812 TRANSLATION nonsense_mediated_decay - - 5 51.0 0.0 1.066 0.0 87.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021466 Ptch1 ENSMUST00000192155 ENSMUSP00000141489 TRANSLATION protein_coding - - 5 1297.0 0.0 15.442 13.8 255.5 21.0 -4,-5 1.0 - 7.398 PRINCIPAL:4 ENSMUSG00000021466 Ptch1 ENSMUST00000195258 ENSMUSP00000141309 TRANSLATION nonsense_mediated_decay start - 5 456.0 0.0 9.83 0.0 104.1 13.0 -4,-1 0.0035 - -2.0 MINOR ENSMUSG00000021466 Ptch1 ENSMUST00000220588 - NO_TRANSLATION retained_intron ENSMUSG00000021466 Ptch1 ENSMUST00000021921 ENSMUSP00000021921 TRANSLATION protein_coding - CCDS26592.1 1 1434.0 0.0 17.742 0.4 255.5 22.0 -4,-1 0.9604 - 8.0 ALTERNATIVE:2 ENSMUSG00000021466 Ptch1 ENSMUST00000195106 ENSMUSP00000141298 TRANSLATION protein_coding stop - 5 326.0 0.0 5.58 0.0 0.0 1.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021466 Ptch1 ENSMUST00000195756 ENSMUSP00000141990 TRANSLATION protein_coding stop - 1 174.0 0.0 4.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021466 Ptch1 ENSMUST00000193953 ENSMUSP00000142036 TRANSLATION protein_coding stop - 1 174.0 0.0 4.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021466 Ptch1 ENSMUST00000223515 - NO_TRANSLATION retained_intron ENSMUSG00000021466 Ptch1 ENSMUST00000222040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021466 Ptch1 ENSMUST00000194663 ENSMUSP00000141766 TRANSLATION nonsense_mediated_decay - - 2 581.0 0.0 12.68 0.0 148.7 15.0 -4,-1 0.0037 - -2.0 MINOR ENSMUSG00000091264 Smim13 ENSMUST00000165561 ENSMUSP00000130956 TRANSLATION protein_coding - CCDS49246.1 1 88.0 0.0 1.35 23.2 73.2 0.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000114133 Btf3l4b ENSMUST00000220449 ENSMUSP00000152074 TRANSLATION protein_coding - - - 158.0 0.0 1.0 36.9 89.0 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000046082 Tmem174 ENSMUST00000050389 ENSMUSP00000057581 TRANSLATION protein_coding - CCDS26715.1 1 243.0 0.0 0.0 11.9 393.5 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000104962 Trgj1 ENSMUST00000200495 ENSMUSP00000143192 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000021318 Gli3 ENSMUST00000130065 ENSMUSP00000115989 TRANSLATION protein_coding stop - 1 596.0 15.0 2.6 0.0 57.8 0.0 -4,-5 0.0027 3 -2.0 MINOR ENSMUSG00000021318 Gli3 ENSMUST00000130535 - NO_TRANSLATION retained_intron ENSMUSG00000021318 Gli3 ENSMUST00000141194 ENSMUSP00000152092 TRANSLATION protein_coding - - 2 77.0 0.0 0.0 0.0 0.0 0.0 1,-4 0.002 - 0.0 MINOR ENSMUSG00000021318 Gli3 ENSMUST00000110510 ENSMUSP00000106137 TRANSLATION protein_coding - CCDS36603.1 1 1583.0 20.0 3.53 3.8 94.5 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000071516 H2ac13 ENSMUST00000070124 ENSMUSP00000088285 TRANSLATION protein_coding - CCDS26288.1 - 130.0 0.0 1.0 11.0 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000115791 Vmn1r217 ENSMUST00000091721 ENSMUSP00000089314 TRANSLATION protein_coding - CCDS26332.1 - 298.0 0.0 0.0 0.7 122.0 4.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115791 Vmn1r217 ENSMUST00000227110 ENSMUSP00000154137 TRANSLATION protein_coding - CCDS26332.1 - 298.0 0.0 0.0 0.7 122.0 4.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000115791 Vmn1r217 ENSMUST00000228656 ENSMUSP00000154563 TRANSLATION protein_coding - CCDS26332.1 - 298.0 0.0 0.0 0.7 122.0 4.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000021461 Fancc ENSMUST00000220684 ENSMUSP00000152119 TRANSLATION protein_coding - - 5 412.0 0.0 0.0 0.0 652.3 0.0 -4,-5 0.0137 - 0.0 MINOR ENSMUSG00000021461 Fancc ENSMUST00000160735 ENSMUSP00000125710 TRANSLATION protein_coding start/stop - 3 117.0 0.0 0.0 0.0 114.8 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000021461 Fancc ENSMUST00000161656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021461 Fancc ENSMUST00000221054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021461 Fancc ENSMUST00000159056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021461 Fancc ENSMUST00000162375 ENSMUSP00000124759 TRANSLATION protein_coding stop - 5 212.0 0.0 0.0 0.0 337.8 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000021461 Fancc ENSMUST00000160931 ENSMUSP00000124165 TRANSLATION protein_coding stop - 3 43.0 0.0 0.0 0.0 52.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021461 Fancc ENSMUST00000160166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021461 Fancc ENSMUST00000160333 - NO_TRANSLATION retained_intron ENSMUSG00000021461 Fancc ENSMUST00000163091 ENSMUSP00000124406 TRANSLATION protein_coding - CCDS84029.1 5 591.0 0.0 0.0 0.0 779.4 0.0 -4,-5 0.0969 - 3.582 MINOR ENSMUSG00000021461 Fancc ENSMUST00000160336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021461 Fancc ENSMUST00000099444 ENSMUSP00000097043 TRANSLATION protein_coding - CCDS70472.1 5 461.0 0.0 0.0 0.1 640.4 0.0 -4,-7 0.0494 - 0.0 MINOR ENSMUSG00000021461 Fancc ENSMUST00000161507 - NO_TRANSLATION retained_intron ENSMUSG00000021461 Fancc ENSMUST00000073029 ENSMUSP00000072788 TRANSLATION protein_coding - CCDS36700.1 1 558.0 0.0 0.0 5.1 819.7 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000021461 Fancc ENSMUST00000160617 ENSMUSP00000123767 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021461 Fancc ENSMUST00000161977 ENSMUSP00000123817 TRANSLATION protein_coding - CCDS36700.1 1 558.0 0.0 0.0 5.1 819.7 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000021461 Fancc ENSMUST00000162971 ENSMUSP00000123972 TRANSLATION protein_coding stop - 5 229.0 0.0 0.0 0.0 368.4 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000021461 Fancc ENSMUST00000159024 ENSMUSP00000124325 TRANSLATION protein_coding stop - 5 216.0 0.0 0.0 0.0 314.7 0.0 -4,-6 0.0008 - -2.0 MINOR ENSMUSG00000021461 Fancc ENSMUST00000160151 - NO_TRANSLATION retained_intron ENSMUSG00000060639 H4c9 ENSMUST00000102977 ENSMUSP00000100042 TRANSLATION protein_coding - CCDS26306.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095821 Tcstv3 ENSMUST00000223967 ENSMUSP00000153496 TRANSLATION protein_coding - CCDS56911.1 - 169.0 0.0 0.0 0.0 307.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095821 Tcstv3 ENSMUST00000178349 ENSMUSP00000137396 TRANSLATION protein_coding - CCDS56911.1 - 169.0 0.0 0.0 0.0 307.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000098781 Gm28044 ENSMUST00000170543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000098781 Gm28044 ENSMUST00000044819 ENSMUSP00000049225 TRANSLATION nonsense_mediated_decay,RT - - 3 119.0 0.0 1.8 0.0 67.6 0.0 -4,-6 0.7415 - -2.0 PRINCIPAL:1 ENSMUSG00000076430 Hus1b ENSMUST00000102943 ENSMUSP00000100007 TRANSLATION protein_coding - CCDS26421.1 - 276.0 0.0 1.0 12.7 249.9 0.0 -4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067586 S1pr3 ENSMUST00000087978 ENSMUSP00000085293 TRANSLATION protein_coding - CCDS26512.1 1 378.0 0.0 0.6 5.3 126.5 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000039004 Bmp6 ENSMUST00000171970 ENSMUSP00000126999 TRANSLATION protein_coding - CCDS26462.1 1 510.0 0.0 2.816 1.4 462.8 0.0 0,-4 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000039004 Bmp6 ENSMUST00000224452 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039004 Bmp6 ENSMUST00000223628 ENSMUSP00000152947 TRANSLATION protein_coding stop - - 71.0 0.0 0.1 0.0 40.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021594 Srd5a1 ENSMUST00000091514 ENSMUSP00000089097 TRANSLATION protein_coding - CCDS26624.1 1 255.0 0.0 4.75 7.1 221.3 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000021594 Srd5a1 ENSMUST00000220731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021594 Srd5a1 ENSMUST00000059235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036721 Zscan12 ENSMUST00000099720 ENSMUSP00000097308 TRANSLATION protein_coding - CCDS26273.1 1 501.0 28.0 0.64 0.1 263.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036721 Zscan12 ENSMUST00000225545 ENSMUSP00000153548 TRANSLATION protein_coding - CCDS26273.1 - 501.0 28.0 0.64 0.1 263.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036721 Zscan12 ENSMUST00000053293 ENSMUSP00000058904 TRANSLATION protein_coding - CCDS26273.1 1 501.0 28.0 0.64 0.1 263.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000061615 H2ac4 ENSMUST00000078369 ENSMUSP00000077477 TRANSLATION protein_coding - CCDS26364.1 - 130.0 0.0 1.0 11.0 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021391 Cenpp ENSMUST00000221751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021391 Cenpp ENSMUST00000021818 ENSMUSP00000021818 TRANSLATION protein_coding - CCDS26501.1 1 286.0 0.0 0.0 3.0 285.5 0.0 -4,-5 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000060176 Kif27 ENSMUST00000225388 ENSMUSP00000153598 TRANSLATION protein_coding - CCDS26570.1 - 1394.0 12.0 2.5 0.4 371.8 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000060176 Kif27 ENSMUST00000043605 ENSMUSP00000043304 TRANSLATION protein_coding - CCDS26570.1 5 1394.0 12.0 2.5 0.4 371.8 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000060176 Kif27 ENSMUST00000224694 ENSMUSP00000153268 TRANSLATION nonsense_mediated_decay - - - 144.0 11.0 1.0 0.0 82.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000060176 Kif27 ENSMUST00000225680 - NO_TRANSLATION retained_intron ENSMUSG00000034525 Ice1 ENSMUST00000220637 ENSMUSP00000152818 TRANSLATION nonsense_mediated_decay start - 1 130.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0471 3 -2.0 MINOR ENSMUSG00000034525 Ice1 ENSMUST00000222627 ENSMUSP00000152729 TRANSLATION nonsense_mediated_decay start - 3 29.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.091 - -2.0 MINOR ENSMUSG00000034525 Ice1 ENSMUST00000223102 ENSMUSP00000152065 TRANSLATION protein_coding start - 3 117.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0363 - -2.0 MINOR ENSMUSG00000034525 Ice1 ENSMUST00000222568 ENSMUSP00000152787 TRANSLATION nonsense_mediated_decay - - 1 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0321 - -2.0 MINOR ENSMUSG00000034525 Ice1 ENSMUST00000222274 ENSMUSP00000152860 TRANSLATION nonsense_mediated_decay start - 3 107.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0239 - -2.0 MINOR ENSMUSG00000034525 Ice1 ENSMUST00000222738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034525 Ice1 ENSMUST00000043493 ENSMUSP00000036482 TRANSLATION protein_coding - CCDS49309.1 5 2241.0 0.0 0.0 0.0 0.0 0.0 -4,-5 1.0 13 0.0 PRINCIPAL:1 ENSMUSG00000021411 Pxdc1 ENSMUST00000053459 ENSMUSP00000051246 TRANSLATION protein_coding - CCDS36632.1 1 231.0 0.0 2.75 31.0 24.0 0.0 -4,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021411 Pxdc1 ENSMUST00000021847 ENSMUSP00000021847 TRANSLATION nonsense_mediated_decay - - 1 224.0 0.0 2.75 0.0 24.0 0.0 -4,-2 0.0565 2 -2.0 MINOR ENSMUSG00000021411 Pxdc1 ENSMUST00000152392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021411 Pxdc1 ENSMUST00000125037 ENSMUSP00000117791 TRANSLATION nonsense_mediated_decay - - 1 118.0 0.0 1.75 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000030446 Zfp273 ENSMUST00000181246 - NO_TRANSLATION retained_intron ENSMUSG00000030446 Zfp273 ENSMUST00000012725 ENSMUSP00000012725 TRANSLATION protein_coding - - 1 468.0 60.0 1.4 0.0 314.3 0.0 -4,-7 0.1388 - 13.848 MINOR ENSMUSG00000030446 Zfp273 ENSMUST00000181391 ENSMUSP00000137903 TRANSLATION protein_coding - CCDS49305.1 1 501.0 60.0 1.4 0.0 383.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000060678 H4c3 ENSMUST00000102967 ENSMUSP00000100032 TRANSLATION protein_coding - CCDS26359.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021676 Iqgap2 ENSMUST00000238392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021676 Iqgap2 ENSMUST00000238263 - NO_TRANSLATION retained_intron ENSMUSG00000021676 Iqgap2 ENSMUST00000238404 - NO_TRANSLATION retained_intron ENSMUSG00000021676 Iqgap2 ENSMUST00000238783 - NO_TRANSLATION retained_intron ENSMUSG00000021676 Iqgap2 ENSMUST00000238496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021676 Iqgap2 ENSMUST00000238595 - NO_TRANSLATION retained_intron ENSMUSG00000021676 Iqgap2 ENSMUST00000238515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021676 Iqgap2 ENSMUST00000238261 - NO_TRANSLATION retained_intron ENSMUSG00000021676 Iqgap2 ENSMUST00000068603 ENSMUSP00000067685 TRANSLATION protein_coding - CCDS36753.1 1 1575.0 0.0 15.6 10.5 420.7 0.0 -4,-5 1.0 52 15.0 PRINCIPAL:1 ENSMUSG00000021214 Akr1c18 ENSMUST00000110704 ENSMUSP00000106332 TRANSLATION protein_coding - CCDS84006.1 1 297.0 48.0 7.0 3.3 162.5 0.0 -4,-5 0.1489 4 16.395 MINOR ENSMUSG00000021214 Akr1c18 ENSMUST00000021635 ENSMUSP00000021635 TRANSLATION protein_coding - CCDS26219.1 1 323.0 48.0 7.75 10.3 176.6 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000021696 Elovl7 ENSMUST00000022207 ENSMUSP00000022207 TRANSLATION protein_coding - CCDS36779.1 1 281.0 0.0 6.2 26.7 221.3 7.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000021696 Elovl7 ENSMUST00000225550 ENSMUSP00000152997 TRANSLATION nonsense_mediated_decay - - - 71.0 0.0 1.45 0.0 22.9 2.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000038014 Fam120a ENSMUST00000060805 ENSMUSP00000053877 TRANSLATION protein_coding - CCDS49259.1 1 1112.0 0.0 0.0 15.8 0.0 0.0 -4,-5 1.0 32 4.0 PRINCIPAL:1 ENSMUSG00000021390 Ogn ENSMUST00000021822 ENSMUSP00000021822 TRANSLATION protein_coding - CCDS26505.1 1 298.0 0.0 4.4 12.3 40.6 0.0 3,-2 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000021363 Mak ENSMUST00000165087 ENSMUSP00000129615 TRANSLATION protein_coding - CCDS49245.1 1 646.0 18.0 5.95 9.3 267.6 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:4 ENSMUSG00000021363 Mak ENSMUST00000021792 ENSMUSP00000021792 TRANSLATION protein_coding - CCDS26471.1 1 622.0 18.0 5.95 8.6 267.6 0.0 -4,-5 0.9471 2 14.748 ALTERNATIVE:1 ENSMUSG00000021363 Mak ENSMUST00000225789 - NO_TRANSLATION retained_intron ENSMUSG00000021363 Mak ENSMUST00000224423 ENSMUSP00000152961 TRANSLATION protein_coding stop - - 194.0 18.0 4.6 0.0 214.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021363 Mak ENSMUST00000224740 ENSMUSP00000153314 TRANSLATION protein_coding - - - 621.0 18.0 5.95 8.6 267.6 0.0 -4,-5 0.7744 2 14.748 ALTERNATIVE:1 ENSMUSG00000021363 Mak ENSMUST00000070193 ENSMUSP00000064750 TRANSLATION protein_coding - CCDS49244.1 1 550.0 18.0 5.35 0.7 204.7 0.0 -4,-5 0.019 2 10.8 MINOR ENSMUSG00000021363 Mak ENSMUST00000225084 ENSMUSP00000152946 TRANSLATION protein_coding - CCDS49245.1 - 646.0 18.0 5.95 9.3 267.6 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:4 ENSMUSG00000021363 Mak ENSMUST00000225906 ENSMUSP00000153176 TRANSLATION protein_coding start - - 168.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000038042 Ptpdc1 ENSMUST00000035824 ENSMUSP00000047374 TRANSLATION protein_coding - CCDS26495.1 1 747.0 11.0 1.19 0.0 44.6 0.0 -4,-5 0.4089 15 12.0 ALTERNATIVE:2 ENSMUSG00000038042 Ptpdc1 ENSMUST00000221887 - NO_TRANSLATION retained_intron ENSMUSG00000038042 Ptpdc1 ENSMUST00000222028 ENSMUSP00000152771 TRANSLATION protein_coding - - 1 808.0 11.0 1.19 0.0 44.6 0.0 -4,-5 0.8192 15 12.0 PRINCIPAL:2 ENSMUSG00000038042 Ptpdc1 ENSMUST00000238995 ENSMUSP00000158961 TRANSLATION protein_coding - - - 795.0 11.0 1.19 0.0 44.6 0.0 -4,0 0.3279 15 12.0 ALTERNATIVE:2 ENSMUSG00000038042 Ptpdc1 ENSMUST00000223025 ENSMUSP00000152409 TRANSLATION nonsense_mediated_decay - - 1 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071252 2210408I21Rik ENSMUST00000225605 ENSMUSP00000153096 TRANSLATION protein_coding - - - 324.0 0.0 0.0 3.5 0.0 0.0 -4,-5 0.4779 1 1.666 MINOR ENSMUSG00000071252 2210408I21Rik ENSMUST00000225960 ENSMUSP00000153525 TRANSLATION nonsense_mediated_decay - - - 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071252 2210408I21Rik ENSMUST00000225760 ENSMUSP00000153269 TRANSLATION protein_coding start/stop - - 198.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000071252 2210408I21Rik ENSMUST00000168779 ENSMUSP00000127449 TRANSLATION protein_coding - CCDS49316.1 1 1272.0 0.0 0.0 4.0 455.2 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000071252 2210408I21Rik ENSMUST00000225992 - NO_TRANSLATION retained_intron ENSMUSG00000021609 Slc6a3 ENSMUST00000022100 ENSMUSP00000022100 TRANSLATION protein_coding - CCDS26632.1 1 619.0 0.0 12.48 15.4 779.5 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000015536 Mocs2 ENSMUST00000170985 - NO_TRANSLATION retained_intron ENSMUSG00000015536 Mocs2 ENSMUST00000184245 ENSMUSP00000139355 TRANSLATION protein_coding - CCDS49369.1 5 88.0 0.0 2.25 2.9 62.2 0.0 -4,-6 0.0585 4 4.359 MINOR ENSMUSG00000015536 Mocs2 ENSMUST00000183407 ENSMUSP00000139011 TRANSLATION protein_coding - CCDS49369.1 5 88.0 0.0 2.25 2.9 62.2 0.0 -4,-6 0.0585 4 4.359 MINOR ENSMUSG00000015536 Mocs2 ENSMUST00000015680 ENSMUSP00000015680 TRANSLATION protein_coding - CCDS49371.1 1 189.0 0.0 4.25 9.0 134.7 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000015536 Mocs2 ENSMUST00000166176 ENSMUSP00000125797 TRANSLATION protein_coding - CCDS49371.1 1 189.0 0.0 4.25 9.0 134.7 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000015536 Mocs2 ENSMUST00000184335 ENSMUSP00000139064 TRANSLATION protein_coding - CCDS49369.1 5 88.0 0.0 2.25 2.9 62.2 0.0 -4,-6 0.0585 4 4.359 MINOR ENSMUSG00000015536 Mocs2 ENSMUST00000184046 ENSMUSP00000138936 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015536 Mocs2 ENSMUST00000184672 ENSMUSP00000139298 TRANSLATION protein_coding - CCDS49371.1 5 189.0 0.0 4.25 9.0 134.7 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000015536 Mocs2 ENSMUST00000164737 ENSMUSP00000133069 TRANSLATION protein_coding - CCDS49370.1 3 157.0 0.0 3.25 0.0 42.5 0.0 -4,-5 0.0014 3 4.47 MINOR ENSMUSG00000015536 Mocs2 ENSMUST00000184282 - NO_TRANSLATION retained_intron ENSMUSG00000015536 Mocs2 ENSMUST00000184781 ENSMUSP00000138856 TRANSLATION protein_coding - CCDS49369.1 5 88.0 0.0 2.25 2.9 62.2 0.0 -4,-6 0.0585 4 4.359 MINOR ENSMUSG00000015536 Mocs2 ENSMUST00000050131 - NO_TRANSLATION retained_intron ENSMUSG00000015536 Mocs2 ENSMUST00000184214 ENSMUSP00000139285 TRANSLATION protein_coding - CCDS49369.1 3 88.0 0.0 2.25 2.9 62.2 0.0 -4,-6 0.0585 4 4.359 MINOR ENSMUSG00000015536 Mocs2 ENSMUST00000165669 - NO_TRANSLATION retained_intron ENSMUSG00000015536 Mocs2 ENSMUST00000164871 ENSMUSP00000131816 TRANSLATION protein_coding stop - 5 82.0 0.0 1.0 0.0 25.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000015536 Mocs2 ENSMUST00000165022 ENSMUSP00000128965 TRANSLATION protein_coding - CCDS49369.1 1 88.0 0.0 2.25 2.9 62.2 0.0 -4,-6 0.0585 4 4.359 MINOR ENSMUSG00000015536 Mocs2 ENSMUST00000166104 ENSMUSP00000129021 TRANSLATION protein_coding - CCDS49369.1 1 88.0 0.0 2.25 2.9 62.2 0.0 -4,-6 0.0585 4 4.359 MINOR ENSMUSG00000034987 Hrh2 ENSMUST00000038101 ENSMUSP00000038170 TRANSLATION protein_coding - CCDS26526.1 1 397.0 0.0 0.6 0.0 231.3 8.0 -4,-5 0.3381 - 12.0 MINOR ENSMUSG00000034987 Hrh2 ENSMUST00000209846 ENSMUSP00000148117 TRANSLATION protein_coding - - 5 421.0 0.0 0.6 4.9 231.3 8.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000034987 Hrh2 ENSMUST00000211742 ENSMUSP00000147413 TRANSLATION nonsense_mediated_decay - - 5 371.0 0.0 0.6 0.0 231.3 8.0 -4,-5 0.1133 - -2.0 MINOR ENSMUSG00000099787 Vmn1r192 ENSMUST00000072632 ENSMUSP00000072426 TRANSLATION protein_coding - CCDS26311.1 - 300.0 0.0 0.0 2.6 117.5 5.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000099787 Vmn1r192 ENSMUST00000238109 ENSMUSP00000157643 TRANSLATION protein_coding - CCDS26311.1 - 300.0 0.0 0.0 2.6 117.5 5.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000062201 Prl3d3 ENSMUST00000223958 ENSMUSP00000153035 TRANSLATION protein_coding - - - 224.0 0.0 2.4 0.4 233.5 0.0 3,-1 0.3142 - 8.0 ALTERNATIVE:2 ENSMUSG00000062201 Prl3d3 ENSMUST00000073601 ENSMUSP00000073286 TRANSLATION protein_coding - CCDS26391.1 1 223.0 0.0 2.4 0.4 233.5 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000021484 Lman2 ENSMUST00000021940 ENSMUSP00000021940 TRANSLATION protein_coding - CCDS26544.1 1 358.0 11.0 6.15 7.4 337.0 0.0 0,-2 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000021484 Lman2 ENSMUST00000225066 - NO_TRANSLATION retained_intron ENSMUSG00000021484 Lman2 ENSMUST00000224517 - NO_TRANSLATION retained_intron ENSMUSG00000021484 Lman2 ENSMUST00000225366 - NO_TRANSLATION retained_intron ENSMUSG00000056223 Spata31 ENSMUST00000221202 ENSMUSP00000152205 TRANSLATION protein_coding - - 5 66.0 0.0 0.6 0.0 0.0 1.0 -4,-5 0.0464 - 6.0 MINOR ENSMUSG00000056223 Spata31 ENSMUST00000070216 ENSMUSP00000097025 TRANSLATION protein_coding - CCDS26602.1 1 1014.0 0.0 0.6 0.0 301.0 1.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025873 Faf2 ENSMUST00000026991 ENSMUSP00000026991 TRANSLATION protein_coding - - 1 426.0 0.0 9.51 3.4 61.5 2.0 -4,-5 0.2131 8 12.296 MINOR ENSMUSG00000025873 Faf2 ENSMUST00000126071 ENSMUSP00000121182 TRANSLATION protein_coding - CCDS36668.1 1 445.0 0.0 9.51 33.5 61.5 2.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000025873 Faf2 ENSMUST00000135015 ENSMUSP00000117945 TRANSLATION nonsense_mediated_decay - - 3 49.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025873 Faf2 ENSMUST00000220453 - NO_TRANSLATION retained_intron ENSMUSG00000025873 Faf2 ENSMUST00000124752 ENSMUSP00000121606 TRANSLATION protein_coding stop - 5 263.0 0.0 5.68 0.0 22.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000025873 Faf2 ENSMUST00000141915 - NO_TRANSLATION retained_intron ENSMUSG00000025873 Faf2 ENSMUST00000135232 ENSMUSP00000123026 TRANSLATION protein_coding stop - 3 132.0 0.0 2.1 0.0 22.5 2.0 -4,-5 0.0042 2 -2.0 MINOR ENSMUSG00000025873 Faf2 ENSMUST00000153894 ENSMUSP00000120594 TRANSLATION nonsense_mediated_decay start - 5 69.0 0.0 0.0 0.0 0.0 2.0 -2,-5 0.0012 - -2.0 MINOR ENSMUSG00000025873 Faf2 ENSMUST00000137413 ENSMUSP00000116612 TRANSLATION protein_coding stop - 5 76.0 0.0 1.1 0.0 22.5 2.0 -4,-5 0.0027 1 -2.0 MINOR ENSMUSG00000096323 Gm20767 ENSMUST00000225683 ENSMUSP00000152988 TRANSLATION protein_coding - CCDS56908.1 - 169.0 0.0 0.16 0.0 299.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096323 Gm20767 ENSMUST00000179071 ENSMUSP00000137504 TRANSLATION protein_coding - CCDS56908.1 - 169.0 0.0 0.16 0.0 299.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039109 F13a1 ENSMUST00000224783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039109 F13a1 ENSMUST00000037491 ENSMUSP00000048667 TRANSLATION protein_coding - CCDS26456.1 1 732.0 11.0 13.75 11.6 322.1 0.0 -4,-6 1.0 25 21.0 PRINCIPAL:1 ENSMUSG00000039109 F13a1 ENSMUST00000164727 ENSMUSP00000128316 TRANSLATION protein_coding - CCDS26456.1 1 732.0 11.0 13.75 11.6 322.1 0.0 -4,-6 1.0 25 21.0 PRINCIPAL:1 ENSMUSG00000039109 F13a1 ENSMUST00000225168 - NO_TRANSLATION retained_intron ENSMUSG00000039109 F13a1 ENSMUST00000224446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074651 Mcidas ENSMUST00000092089 ENSMUSP00000089721 TRANSLATION protein_coding - CCDS36783.1 1 379.0 0.0 1.6 0.1 60.8 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000069270 H2ac6 ENSMUST00000171127 ENSMUSP00000127684 TRANSLATION protein_coding - CCDS26356.1 - 130.0 0.0 1.0 11.0 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021356 Irf4 ENSMUST00000021784 ENSMUSP00000021784 TRANSLATION protein_coding - CCDS26419.1 1 450.0 0.0 5.53 13.0 362.2 0.0 -4,-5 0.9864 8 11.428 ALTERNATIVE:1 ENSMUSG00000021356 Irf4 ENSMUST00000222125 ENSMUSP00000152134 TRANSLATION protein_coding stop - 2 63.0 0.0 1.0 0.0 55.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021356 Irf4 ENSMUST00000110307 ENSMUSP00000105936 TRANSLATION protein_coding - CCDS84017.1 1 449.0 0.0 5.53 15.0 362.2 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:4 ENSMUSG00000021620 Acot12 ENSMUST00000159214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021620 Acot12 ENSMUST00000022120 ENSMUSP00000022120 TRANSLATION protein_coding - CCDS26678.1 1 556.0 0.0 11.85 0.4 161.2 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000021620 Acot12 ENSMUST00000161337 - NO_TRANSLATION retained_intron ENSMUSG00000045136 Tubb2b ENSMUST00000075774 ENSMUSP00000075178 TRANSLATION protein_coding - CCDS26445.1 1 445.0 16.0 3.5 24.8 379.5 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000045136 Tubb2b ENSMUST00000220744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041632 Mrps27 ENSMUST00000052249 ENSMUSP00000062326 TRANSLATION protein_coding - CCDS26722.1 1 415.0 0.0 8.0 4.2 508.1 0.0 -4,0 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000041632 Mrps27 ENSMUST00000225973 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041632 Mrps27 ENSMUST00000224660 ENSMUSP00000156296 TRANSLATION protein_coding stop - - 289.0 0.0 5.5 0.0 342.9 0.0 -4,0 0.0001 6 -2.0 MINOR ENSMUSG00000021474 Sfxn1 ENSMUST00000223504 - NO_TRANSLATION retained_intron ENSMUSG00000021474 Sfxn1 ENSMUST00000222285 - NO_TRANSLATION retained_intron ENSMUSG00000021474 Sfxn1 ENSMUST00000021930 ENSMUSP00000021930 TRANSLATION protein_coding - CCDS26525.1 1 322.0 0.0 5.109 36.9 501.8 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000069266 H4c2 ENSMUST00000102965 ENSMUSP00000100030 TRANSLATION protein_coding - CCDS26366.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049985 Ankrd55 ENSMUST00000056047 ENSMUSP00000058891 TRANSLATION protein_coding - CCDS49363.1 1 221.0 0.0 4.346 0.0 30.9 0.0 -4,-5 0.008 - 0.834 MINOR ENSMUSG00000049985 Ankrd55 ENSMUST00000168684 ENSMUSP00000129726 TRANSLATION protein_coding - CCDS49364.1 1 273.0 0.0 6.412 0.0 75.8 0.0 -4,-5 0.0124 - 7.662 MINOR ENSMUSG00000049985 Ankrd55 ENSMUST00000165593 ENSMUSP00000126199 TRANSLATION protein_coding - CCDS49365.1 5 598.0 0.0 6.75 0.0 109.3 0.0 -4,-5 0.141 2 10.344 MINOR ENSMUSG00000049985 Ankrd55 ENSMUST00000225329 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049985 Ankrd55 ENSMUST00000223871 ENSMUSP00000153075 TRANSLATION protein_coding - - - 134.0 0.0 3.75 0.0 31.3 0.0 -4,-5 0.0 - 0.594 MINOR ENSMUSG00000049985 Ankrd55 ENSMUST00000022275 ENSMUSP00000022275 TRANSLATION protein_coding - CCDS26772.1 1 626.0 0.0 7.214 0.0 121.4 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000021590 Spata9 ENSMUST00000223744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021590 Spata9 ENSMUST00000022081 ENSMUSP00000022081 TRANSLATION protein_coding - CCDS26653.1 1 252.0 0.0 0.6 9.8 453.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021590 Spata9 ENSMUST00000225553 ENSMUSP00000153343 TRANSLATION protein_coding stop - - 103.0 0.0 0.0 0.0 171.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000082316 Vmn1r221 ENSMUST00000122275 ENSMUSP00000157477 TRANSLATION protein_coding - - - 312.0 0.0 0.0 1.4 121.6 5.0 0,-5 0.7422 - 7.0 PRINCIPAL:1 ENSMUSG00000082316 Vmn1r221 ENSMUST00000236177 ENSMUSP00000157606 TRANSLATION protein_coding - - - 312.0 0.0 0.0 1.4 121.6 5.0 0,-5 0.7422 - 7.0 PRINCIPAL:1 ENSMUSG00000057762 Gm6169 ENSMUST00000071118 ENSMUSP00000132645 TRANSLATION protein_coding - - - 152.0 0.0 0.6 9.9 45.5 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000045767 B230219D22Rik ENSMUST00000057844 ENSMUSP00000055271 TRANSLATION protein_coding - CCDS26552.1 1 188.0 0.0 0.0 20.0 0.0 0.0 -4,-5 1.0 4 4.0 PRINCIPAL:1 ENSMUSG00000047462 Gpr141b ENSMUST00000151029 ENSMUSP00000158601 TRANSLATION protein_coding - - 1 299.0 0.0 0.2 3.5 26.2 0.0 -4,-7 0.8839 - 13.0 PRINCIPAL:1 ENSMUSG00000113450 Zfp935 ENSMUST00000223247 ENSMUSP00000152739 TRANSLATION protein_coding - - 1 150.0 0.0 1.8 0.0 78.3 0.0 -4,-5 0.0 - 2.85 MINOR ENSMUSG00000113450 Zfp935 ENSMUST00000221747 ENSMUSP00000152662 TRANSLATION protein_coding - CCDS36697.1 1 353.0 35.0 3.375 0.3 262.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000113450 Zfp935 ENSMUST00000221951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000114279 H2bc14 ENSMUST00000224651 ENSMUSP00000153457 TRANSLATION protein_coding - CCDS26290.1 - 126.0 0.0 1.0 11.0 91.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034686 Prr7 ENSMUST00000046533 ENSMUSP00000046776 TRANSLATION protein_coding - CCDS26546.1 1 269.0 0.0 0.6 8.1 0.0 0.0 -2,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000060147 Serpinb6a ENSMUST00000168400 ENSMUSP00000126450 TRANSLATION protein_coding stop - 5 120.0 0.0 3.25 0.0 99.9 2.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000060147 Serpinb6a ENSMUST00000167260 ENSMUSP00000127768 TRANSLATION protein_coding stop - 5 193.0 0.0 5.05 0.0 213.5 2.0 -4,-6 0.0003 11 -2.0 MINOR ENSMUSG00000060147 Serpinb6a ENSMUST00000017188 ENSMUSP00000017188 TRANSLATION protein_coding - CCDS49228.1 1 399.0 0.0 7.45 0.1 431.7 2.0 -4,-2 0.3538 22 12.0 MINOR ENSMUSG00000060147 Serpinb6a ENSMUST00000170620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060147 Serpinb6a ENSMUST00000076532 ENSMUSP00000075848 TRANSLATION protein_coding - CCDS26441.1 5 378.0 0.0 7.25 9.9 431.7 2.0 -4,-6 1.0 21 14.598 PRINCIPAL:1 ENSMUSG00000060147 Serpinb6a ENSMUST00000166354 ENSMUSP00000126287 TRANSLATION protein_coding stop - 2 68.0 0.0 1.8 0.0 58.6 2.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000060147 Serpinb6a ENSMUST00000171034 ENSMUSP00000132433 TRANSLATION protein_coding stop - 5 228.0 0.0 5.85 0.0 242.9 2.0 -4,-6 0.0022 13 -2.0 MINOR ENSMUSG00000060147 Serpinb6a ENSMUST00000167163 ENSMUSP00000131115 TRANSLATION protein_coding - CCDS26441.1 5 378.0 0.0 7.25 9.9 431.7 2.0 -4,-6 1.0 21 14.598 PRINCIPAL:1 ENSMUSG00000060147 Serpinb6a ENSMUST00000171985 - NO_TRANSLATION retained_intron ENSMUSG00000060147 Serpinb6a ENSMUST00000167597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060147 Serpinb6a ENSMUST00000170991 ENSMUSP00000131900 TRANSLATION protein_coding stop - 3 72.0 0.0 1.75 0.0 58.6 2.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000060147 Serpinb6a ENSMUST00000167237 ENSMUSP00000128267 TRANSLATION protein_coding stop - 3 18.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060147 Serpinb6a ENSMUST00000171252 ENSMUSP00000126162 TRANSLATION protein_coding stop - 5 187.0 0.0 5.05 0.0 206.4 2.0 -4,-6 0.0003 11 -2.0 MINOR ENSMUSG00000060147 Serpinb6a ENSMUST00000168350 ENSMUSP00000130356 TRANSLATION protein_coding stop - 3 162.0 0.0 4.3 0.0 155.5 2.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000060147 Serpinb6a ENSMUST00000043552 ENSMUSP00000041016 TRANSLATION protein_coding - CCDS26441.1 1 378.0 0.0 7.25 9.9 431.7 2.0 -4,-6 1.0 21 14.598 PRINCIPAL:1 ENSMUSG00000060147 Serpinb6a ENSMUST00000164627 ENSMUSP00000127224 TRANSLATION protein_coding stop - 2 144.0 0.0 3.9 0.0 134.7 2.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000060147 Serpinb6a ENSMUST00000171951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035762 Tmem161b ENSMUST00000224501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035762 Tmem161b ENSMUST00000225708 ENSMUSP00000152964 TRANSLATION nonsense_mediated_decay start - - 139.0 0.0 0.0 0.0 194.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000035762 Tmem161b ENSMUST00000223827 ENSMUSP00000153673 TRANSLATION nonsense_mediated_decay - - - 267.0 0.0 0.0 0.0 394.3 6.0 0,-3 0.0049 3 -2.0 MINOR ENSMUSG00000035762 Tmem161b ENSMUST00000225069 ENSMUSP00000152891 TRANSLATION protein_coding - - - 305.0 0.0 0.0 9.4 415.2 7.0 -4,-7 0.1956 4 1.204 MINOR ENSMUSG00000035762 Tmem161b ENSMUST00000225212 - NO_TRANSLATION retained_intron ENSMUSG00000035762 Tmem161b ENSMUST00000223862 ENSMUSP00000153435 TRANSLATION nonsense_mediated_decay - - - 222.0 0.0 0.0 0.0 297.2 4.0 0,-3 0.0057 1 -2.0 MINOR ENSMUSG00000035762 Tmem161b ENSMUST00000057495 ENSMUSP00000055208 TRANSLATION protein_coding - CCDS36739.1 1 487.0 0.0 0.0 28.9 699.5 11.0 0,-3 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000035762 Tmem161b ENSMUST00000225126 - NO_TRANSLATION retained_intron ENSMUSG00000035762 Tmem161b ENSMUST00000224525 ENSMUSP00000152993 TRANSLATION protein_coding stop - - 23.0 0.0 0.0 0.0 28.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038267 Slc22a23 ENSMUST00000128392 - NO_TRANSLATION retained_intron ENSMUSG00000038267 Slc22a23 ENSMUST00000148390 ENSMUSP00000122283 TRANSLATION protein_coding start - 5 566.0 0.0 4.455 0.0 90.7 12.0 -4,-5 0.0463 8 -2.0 MINOR ENSMUSG00000038267 Slc22a23 ENSMUST00000145038 ENSMUSP00000122376 TRANSLATION nonsense_mediated_decay start - 5 182.0 0.0 0.54 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000038267 Slc22a23 ENSMUST00000040336 ENSMUSP00000042742 TRANSLATION protein_coding - CCDS26446.1 1 689.0 0.0 5.285 2.3 85.5 12.0 -4,-7 1.0 9 12.658 PRINCIPAL:1 ENSMUSG00000038267 Slc22a23 ENSMUST00000143353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047419 Cmya5 ENSMUST00000062122 ENSMUSP00000050408 TRANSLATION protein_coding - CCDS49329.1 1 3676.0 4.0 3.0 0.0 50.5 0.0 -4,-5 1.0 72 16.0 PRINCIPAL:1 ENSMUSG00000018102 H2bc4 ENSMUST00000018246 ENSMUSP00000018246 TRANSLATION protein_coding - CCDS26357.1 1 126.0 0.0 1.0 12.5 91.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074863 Platr25 ENSMUST00000220733 ENSMUSP00000152199 TRANSLATION protein_coding - - 5 466.0 42.0 4.0 0.1 270.9 0.0 -4,-5 0.3221 - 13.4 ALTERNATIVE:2 ENSMUSG00000074863 Platr25 ENSMUST00000222602 ENSMUSP00000152625 TRANSLATION protein_coding - - - 312.0 40.0 1.0 0.0 223.7 0.0 -4,-5 0.0057 - 6.668 MINOR ENSMUSG00000074863 Platr25 ENSMUST00000143260 ENSMUSP00000152687 TRANSLATION protein_coding - - 1 95.0 0.0 1.5 0.0 79.1 0.0 -4,-6 0.0006 - 1.002 MINOR ENSMUSG00000074863 Platr25 ENSMUST00000221996 ENSMUSP00000152117 TRANSLATION protein_coding - - 2 464.0 42.0 4.0 0.1 270.9 0.0 -4,-5 0.7951 - 13.4 PRINCIPAL:2 ENSMUSG00000074863 Platr25 ENSMUST00000222477 ENSMUSP00000152582 TRANSLATION protein_coding - - 5 432.0 42.0 3.25 0.4 188.9 0.0 -4,-5 0.0651 - 11.3 MINOR ENSMUSG00000074863 Platr25 ENSMUST00000223219 ENSMUSP00000152347 TRANSLATION nonsense_mediated_decay - - 5 51.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000074863 Platr25 ENSMUST00000221999 ENSMUSP00000152406 TRANSLATION protein_coding stop - 2 177.0 2.0 3.0 0.0 82.0 0.0 -4,-5 0.0055 - -2.0 MINOR ENSMUSG00000074863 Platr25 ENSMUST00000223528 ENSMUSP00000152470 TRANSLATION nonsense_mediated_decay - - 3 98.0 0.0 1.5 0.0 79.1 0.0 -4,-6 0.0006 - -2.0 MINOR ENSMUSG00000074863 Platr25 ENSMUST00000222303 ENSMUSP00000152463 TRANSLATION protein_coding - - 5 95.0 0.0 1.5 0.0 79.1 0.0 -4,-6 0.0006 - 1.002 MINOR ENSMUSG00000074863 Platr25 ENSMUST00000220864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096537 Fam240b ENSMUST00000180282 ENSMUSP00000136210 TRANSLATION protein_coding - CCDS56887.1 1 78.0 0.0 2.0 10.3 0.0 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000056222 Spock1 ENSMUST00000186271 ENSMUSP00000140755 TRANSLATION protein_coding - CCDS49279.1 1 439.0 8.0 2.53 7.3 223.8 0.0 1,-2 0.9157 8 16.277 ALTERNATIVE:1 ENSMUSG00000056222 Spock1 ENSMUST00000172326 ENSMUSP00000128840 TRANSLATION protein_coding - CCDS49279.1 5 439.0 8.0 2.53 7.3 223.8 0.0 1,-2 0.9157 8 16.277 ALTERNATIVE:1 ENSMUSG00000056222 Spock1 ENSMUST00000185502 ENSMUSP00000140409 TRANSLATION protein_coding - CCDS79195.1 5 442.0 8.0 2.53 9.3 223.8 0.0 1,-2 1.0 8 17.0 PRINCIPAL:4 ENSMUSG00000056222 Spock1 ENSMUST00000189373 ENSMUSP00000139863 TRANSLATION protein_coding - CCDS79194.1 5 367.0 8.0 1.73 0.0 158.0 0.0 1,-2 0.0221 7 11.438 MINOR ENSMUSG00000056222 Spock1 ENSMUST00000185905 ENSMUSP00000153001 TRANSLATION protein_coding - - 1 343.0 8.0 1.73 0.0 158.0 0.0 1,-2 0.002 7 11.438 MINOR ENSMUSG00000056222 Spock1 ENSMUST00000187852 ENSMUSP00000141130 TRANSLATION protein_coding - CCDS79193.1 1 364.0 8.0 1.73 0.0 158.0 0.0 1,-2 0.0219 7 11.438 MINOR ENSMUSG00000048376 F2r ENSMUST00000059193 ENSMUSP00000061754 TRANSLATION protein_coding - CCDS26701.1 1 430.0 0.0 0.8 9.9 134.1 0.0 3,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000071451 Psmg4 ENSMUST00000124996 ENSMUSP00000120336 TRANSLATION protein_coding - CCDS49231.1 1 82.0 0.0 1.3 0.8 33.6 0.0 -4,-5 0.0082 3 4.986 MINOR ENSMUSG00000071451 Psmg4 ENSMUST00000147632 ENSMUSP00000115881 TRANSLATION protein_coding - CCDS49230.1 1 123.0 0.0 3.0 15.9 84.5 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000034617 Mtrr ENSMUST00000223055 - NO_TRANSLATION retained_intron ENSMUSG00000034617 Mtrr ENSMUST00000223398 ENSMUSP00000152387 TRANSLATION protein_coding - CCDS26620.1 1 696.0 57.0 11.135 9.6 330.4 0.0 -4,-2 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000034617 Mtrr ENSMUST00000222107 ENSMUSP00000152837 TRANSLATION nonsense_mediated_decay - - 5 58.0 6.0 0.5 0.0 31.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034617 Mtrr ENSMUST00000221800 - NO_TRANSLATION retained_intron ENSMUSG00000034617 Mtrr ENSMUST00000223101 ENSMUSP00000152884 TRANSLATION nonsense_mediated_decay - - 1 157.0 20.0 2.605 0.0 105.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034617 Mtrr ENSMUST00000221259 ENSMUSP00000152593 TRANSLATION protein_coding stop - 3 68.0 12.0 0.98 0.0 52.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034617 Mtrr ENSMUST00000220544 ENSMUSP00000152659 TRANSLATION protein_coding start - 3 190.0 23.0 2.745 0.0 59.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000034617 Mtrr ENSMUST00000045827 ENSMUSP00000039810 TRANSLATION protein_coding - CCDS26620.1 1 696.0 57.0 11.135 9.6 330.4 0.0 -4,-2 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000034617 Mtrr ENSMUST00000220973 ENSMUSP00000152561 TRANSLATION protein_coding stop - 2 93.0 12.0 1.28 0.0 57.6 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021218 Gdi2 ENSMUST00000222906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021218 Gdi2 ENSMUST00000223501 - NO_TRANSLATION retained_intron ENSMUSG00000021218 Gdi2 ENSMUST00000223396 ENSMUSP00000152454 TRANSLATION protein_coding - CCDS36581.1 1 445.0 0.0 11.08 34.9 783.5 0.0 -4,-5 1.0 27 16.0 PRINCIPAL:1 ENSMUSG00000021218 Gdi2 ENSMUST00000221575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021218 Gdi2 ENSMUST00000059515 ENSMUSP00000062996 TRANSLATION protein_coding - - 1 409.0 0.0 10.08 0.0 678.2 0.0 -4,-5 0.031 25 4.002 MINOR ENSMUSG00000021218 Gdi2 ENSMUST00000222365 ENSMUSP00000152075 TRANSLATION protein_coding stop - 5 318.0 0.0 8.0 0.0 568.3 0.0 -4,-5 0.0036 16 -2.0 MINOR ENSMUSG00000021218 Gdi2 ENSMUST00000221875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021218 Gdi2 ENSMUST00000221348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021218 Gdi2 ENSMUST00000222926 - NO_TRANSLATION retained_intron ENSMUSG00000021218 Gdi2 ENSMUST00000221581 ENSMUSP00000152175 TRANSLATION protein_coding start - 2 104.0 0.0 2.5 0.0 156.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000055313 Pgbd1 ENSMUST00000122872 ENSMUSP00000120175 TRANSLATION protein_coding - CCDS49209.1 1 378.0 0.0 0.0 0.0 144.8 0.0 -4,-7 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000055313 Pgbd1 ENSMUST00000145494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055313 Pgbd1 ENSMUST00000239222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055313 Pgbd1 ENSMUST00000148071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055313 Pgbd1 ENSMUST00000239296 - NO_TRANSLATION transcribed_unitary_pseudogene ENSMUSG00000055313 Pgbd1 ENSMUST00000151743 ENSMUSP00000117669 TRANSLATION protein_coding - CCDS49210.1 1 415.0 0.0 0.0 0.0 144.8 0.0 -4,-7 0.2592 - 0.0 ALTERNATIVE:2 ENSMUSG00000055313 Pgbd1 ENSMUST00000099719 ENSMUSP00000097307 TRANSLATION protein_coding - CCDS49210.1 1 415.0 0.0 0.0 0.0 144.8 0.0 -4,-7 0.2592 - 0.0 ALTERNATIVE:2 ENSMUSG00000055313 Pgbd1 ENSMUST00000239246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075054 Yae1d1 ENSMUST00000222796 ENSMUSP00000152693 TRANSLATION protein_coding - - 5 78.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000075054 Yae1d1 ENSMUST00000222595 - NO_TRANSLATION retained_intron ENSMUSG00000075054 Yae1d1 ENSMUST00000099735 ENSMUSP00000097324 TRANSLATION protein_coding - CCDS26256.1 1 216.0 0.0 2.6 1.9 46.1 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000075054 Yae1d1 ENSMUST00000222308 - NO_TRANSLATION retained_intron ENSMUSG00000038683 Pak1ip1 ENSMUST00000174472 - NO_TRANSLATION retained_intron ENSMUSG00000038683 Pak1ip1 ENSMUST00000173238 - NO_TRANSLATION retained_intron ENSMUSG00000038683 Pak1ip1 ENSMUST00000174527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038683 Pak1ip1 ENSMUST00000046951 ENSMUSP00000040846 TRANSLATION protein_coding - CCDS36638.1 1 382.0 0.0 6.975 0.4 79.0 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000038683 Pak1ip1 ENSMUST00000174551 - NO_TRANSLATION retained_intron ENSMUSG00000069206 Zfp874a ENSMUST00000225479 ENSMUSP00000153515 TRANSLATION protein_coding - - - 141.0 0.0 2.6 0.0 73.2 0.0 -4,-5 0.0 - 0.498 MINOR ENSMUSG00000069206 Zfp874a ENSMUST00000225778 ENSMUSP00000153239 TRANSLATION protein_coding start - - 158.0 0.0 2.6 0.0 73.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000069206 Zfp874a ENSMUST00000224239 - NO_TRANSLATION retained_intron ENSMUSG00000069206 Zfp874a ENSMUST00000223682 ENSMUSP00000153092 TRANSLATION nonsense_mediated_decay - - - 81.0 0.0 1.8 2.3 73.2 0.0 -4,-5 0.3845 - -2.0 MINOR ENSMUSG00000069206 Zfp874a ENSMUST00000180580 ENSMUSP00000137953 TRANSLATION nonsense_mediated_decay - - 1 78.0 0.0 1.8 1.3 73.2 0.0 -4,-5 0.0739 - -2.0 MINOR ENSMUSG00000069206 Zfp874a ENSMUST00000075255 ENSMUSP00000074735 TRANSLATION protein_coding - CCDS56891.1 1 447.0 43.0 5.35 0.1 268.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000069206 Zfp874a ENSMUST00000057241 ENSMUSP00000077307 TRANSLATION protein_coding - - 1 143.0 0.0 1.8 0.0 73.2 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000069206 Zfp874a ENSMUST00000225414 - NO_TRANSLATION retained_intron ENSMUSG00000069206 Zfp874a ENSMUST00000225389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076754 Trgv2 ENSMUST00000103563 ENSMUSP00000100341 TRANSLATION TR_V_gene stop - - 116.0 0.0 1.25 0.0 56.6 0.0 2,-3 0.8251 - -2.0 PRINCIPAL:1 ENSMUSG00000034675 Dbn1 ENSMUST00000127867 - NO_TRANSLATION retained_intron ENSMUSG00000034675 Dbn1 ENSMUST00000124480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034675 Dbn1 ENSMUST00000139275 ENSMUSP00000122574 TRANSLATION protein_coding stop - 3 169.0 0.0 2.3 0.0 37.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000034675 Dbn1 ENSMUST00000109921 ENSMUSP00000105547 TRANSLATION protein_coding - CCDS49273.1 1 661.0 0.0 4.05 0.3 64.2 0.0 -4,-5 0.938 16 8.0 ALTERNATIVE:2 ENSMUSG00000034675 Dbn1 ENSMUST00000021950 ENSMUSP00000021950 TRANSLATION protein_coding - CCDS49274.1 1 706.0 0.0 4.05 0.3 64.2 0.0 -4,-5 0.3013 19 8.0 ALTERNATIVE:2 ENSMUSG00000034675 Dbn1 ENSMUST00000135705 - NO_TRANSLATION retained_intron ENSMUSG00000034675 Dbn1 ENSMUST00000175813 - NO_TRANSLATION retained_intron ENSMUSG00000034675 Dbn1 ENSMUST00000139516 - NO_TRANSLATION retained_intron ENSMUSG00000034675 Dbn1 ENSMUST00000109923 ENSMUSP00000105549 TRANSLATION protein_coding - CCDS36677.1 1 660.0 0.0 4.05 0.3 64.2 0.0 -4,-5 1.0 16 8.0 PRINCIPAL:4 ENSMUSG00000114904 Gm49352 ENSMUST00000225902 ENSMUSP00000152924 TRANSLATION protein_coding,RT start/stop - - 167.0 0.0 2.6 0.0 144.4 0.0 -4,-6 0.7426 - -2.0 PRINCIPAL:1 ENSMUSG00000041431 Ccnb1 ENSMUST00000128279 - NO_TRANSLATION retained_intron ENSMUSG00000041431 Ccnb1 ENSMUST00000072119 ENSMUSP00000071989 TRANSLATION protein_coding - CCDS36768.1 1 430.0 0.0 5.6 5.5 264.4 0.0 -4,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000041431 Ccnb1 ENSMUST00000134080 - NO_TRANSLATION retained_intron ENSMUSG00000041431 Ccnb1 ENSMUST00000091295 ENSMUSP00000088841 TRANSLATION protein_coding - - 1 369.0 0.0 5.0 0.0 254.6 0.0 -4,-2 0.0065 3 10.212 MINOR ENSMUSG00000041431 Ccnb1 ENSMUST00000147790 - NO_TRANSLATION retained_intron ENSMUSG00000041431 Ccnb1 ENSMUST00000174038 ENSMUSP00000133962 TRANSLATION protein_coding - - 5 393.0 0.0 4.6 0.0 220.3 0.0 -4,-2 0.001 3 7.356 MINOR ENSMUSG00000041431 Ccnb1 ENSMUST00000142056 - NO_TRANSLATION retained_intron ENSMUSG00000021404 Serpinb9c ENSMUST00000110284 ENSMUSP00000105913 TRANSLATION protein_coding - CCDS36629.1 1 359.0 0.0 5.2 0.0 387.5 0.0 -4,-7 0.0487 - 9.966 MINOR ENSMUSG00000021404 Serpinb9c ENSMUST00000021837 ENSMUSP00000021837 TRANSLATION protein_coding - CCDS49226.1 1 387.0 0.0 5.815 0.0 400.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021404 Serpinb9c ENSMUST00000135897 ENSMUSP00000116267 TRANSLATION protein_coding stop - 3 88.0 0.0 1.6 0.0 63.2 0.0 -4,-7 0.0004 - -2.0 MINOR ENSMUSG00000078537 B020031M17Rik ENSMUST00000080505 ENSMUSP00000111142 TRANSLATION protein_coding - CCDS56906.1 - 173.0 0.0 0.0 0.0 297.9 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000078537 B020031M17Rik ENSMUST00000180768 ENSMUSP00000137705 TRANSLATION protein_coding - CCDS56906.1 1 173.0 0.0 0.0 0.0 297.9 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047547 Cltb ENSMUST00000146301 - NO_TRANSLATION retained_intron ENSMUSG00000047547 Cltb ENSMUST00000049575 ENSMUSP00000053371 TRANSLATION protein_coding - CCDS84024.1 1 229.0 0.0 3.83 24.7 189.7 0.0 -4,-5 1.0 10 10.0 PRINCIPAL:3 ENSMUSG00000047547 Cltb ENSMUST00000091609 ENSMUSP00000089198 TRANSLATION protein_coding - CCDS26533.1 1 211.0 0.0 3.33 24.7 196.7 0.0 -4,-5 0.9492 9 8.998 ALTERNATIVE:1 ENSMUSG00000047547 Cltb ENSMUST00000140142 ENSMUSP00000122336 TRANSLATION protein_coding start - 5 123.0 0.0 2.0 0.0 72.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000052981 Ube2ql1 ENSMUST00000065118 ENSMUSP00000070906 TRANSLATION protein_coding - CCDS49307.1 1 304.0 0.0 1.8 3.6 43.9 0.0 -4,-6 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000069300 H2bc11 ENSMUST00000110452 ENSMUSP00000106082 TRANSLATION protein_coding - CCDS26308.1 - 126.0 0.0 1.0 12.5 92.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035840 Lysmd3 ENSMUST00000224300 ENSMUSP00000152940 TRANSLATION protein_coding - CCDS26660.1 - 305.0 0.0 0.0 9.5 20.3 0.0 -4,-2 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000035840 Lysmd3 ENSMUST00000049055 ENSMUSP00000038275 TRANSLATION protein_coding - - 1 91.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 1 0.0 MINOR ENSMUSG00000035840 Lysmd3 ENSMUST00000224592 ENSMUSP00000153026 TRANSLATION protein_coding stop - - 73.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 1 -2.0 MINOR ENSMUSG00000035840 Lysmd3 ENSMUST00000224420 ENSMUSP00000152945 TRANSLATION protein_coding start - - 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042869 Or2p2 ENSMUST00000215806 ENSMUSP00000149341 TRANSLATION protein_coding - CCDS26267.1 5 316.0 0.0 1.0 5.6 182.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042869 Or2p2 ENSMUST00000215357 ENSMUSP00000149738 TRANSLATION protein_coding - CCDS26267.1 5 316.0 0.0 1.0 5.6 182.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042869 Or2p2 ENSMUST00000058168 ENSMUSP00000054533 TRANSLATION protein_coding - CCDS26267.1 - 316.0 0.0 1.0 5.6 182.5 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042869 Or2p2 ENSMUST00000213848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064063 BC048507 ENSMUST00000078471 ENSMUSP00000077564 TRANSLATION protein_coding - CCDS36718.1 - 89.0 0.0 1.0 36.9 139.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042118 Bhmt2 ENSMUST00000015941 ENSMUSP00000015941 TRANSLATION protein_coding - CCDS26689.1 1 363.0 0.0 6.816 9.8 150.5 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000038462 Uqcrfs1 ENSMUST00000042834 ENSMUSP00000045284 TRANSLATION protein_coding - CCDS26416.1 1 274.0 10.0 2.0 29.0 246.1 0.0 -3,1 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025870 Arl10 ENSMUST00000156024 ENSMUSP00000116506 TRANSLATION protein_coding stop - 2 202.0 11.0 2.08 0.0 103.3 1.0 0,-3 0.0082 3 -2.0 MINOR ENSMUSG00000025870 Arl10 ENSMUST00000026988 ENSMUSP00000026988 TRANSLATION protein_coding - CCDS26530.1 1 243.0 14.0 2.43 9.2 124.8 1.0 0,-3 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000025870 Arl10 ENSMUST00000135354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025870 Arl10 ENSMUST00000142246 ENSMUSP00000114680 TRANSLATION protein_coding start - 3 54.0 0.0 1.0 0.0 45.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000021697 Depdc1b ENSMUST00000168037 - NO_TRANSLATION retained_intron ENSMUSG00000021697 Depdc1b ENSMUST00000163307 ENSMUSP00000131707 TRANSLATION nonsense_mediated_decay - CCDS26762.1 1 529.0 0.0 2.0 23.0 96.0 0.0 -4,-2 1.0 - -2.0 MINOR ENSMUSG00000021697 Depdc1b ENSMUST00000172402 - NO_TRANSLATION retained_intron ENSMUSG00000021697 Depdc1b ENSMUST00000051594 ENSMUSP00000059291 TRANSLATION protein_coding - CCDS26762.1 1 529.0 0.0 2.0 23.0 96.0 0.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000021697 Depdc1b ENSMUST00000171178 ENSMUSP00000132972 TRANSLATION protein_coding - - 5 467.0 0.0 2.0 2.1 96.0 0.0 -4,-2 0.2987 1 12.2 MINOR ENSMUSG00000021697 Depdc1b ENSMUST00000167413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035711 Dok3 ENSMUST00000047877 ENSMUSP00000046695 TRANSLATION protein_coding - CCDS26548.1 1 444.0 0.0 1.544 5.1 108.5 0.0 -4,-5 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000035711 Dok3 ENSMUST00000223563 ENSMUSP00000153308 TRANSLATION protein_coding - CCDS26548.1 - 444.0 0.0 1.544 5.1 108.5 0.0 -4,-5 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000035711 Dok3 ENSMUST00000223944 - NO_TRANSLATION retained_intron ENSMUSG00000021539 Lect2 ENSMUST00000062806 ENSMUSP00000060495 TRANSLATION protein_coding - CCDS26564.1 1 151.0 3.0 3.33 10.2 26.3 0.0 4,-1 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000021539 Lect2 ENSMUST00000225183 ENSMUSP00000153699 TRANSLATION protein_coding - - - 132.0 2.0 2.0 0.0 0.0 0.0 4,-1 0.0036 1 5.343 MINOR ENSMUSG00000032621 Srek1 ENSMUST00000074616 ENSMUSP00000074196 TRANSLATION protein_coding - - 5 610.0 0.0 0.84 0.0 78.0 0.0 -4,-6 0.8037 9 12.0 PRINCIPAL:1 ENSMUSG00000032621 Srek1 ENSMUST00000211322 ENSMUSP00000148039 TRANSLATION protein_coding stop - 5 314.0 0.0 0.84 0.0 51.4 0.0 -3,-6 0.05 5 -2.0 MINOR ENSMUSG00000032621 Srek1 ENSMUST00000209961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032621 Srek1 ENSMUST00000210836 ENSMUSP00000147868 TRANSLATION nonsense_mediated_decay - - 1 198.0 0.0 0.84 0.0 51.4 0.0 -3,-6 0.0483 4 -2.0 MINOR ENSMUSG00000032621 Srek1 ENSMUST00000211139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032621 Srek1 ENSMUST00000211030 - NO_TRANSLATION retained_intron ENSMUSG00000032621 Srek1 ENSMUST00000210489 ENSMUSP00000147737 TRANSLATION protein_coding - CCDS26743.1 1 494.0 0.0 0.84 0.1 51.4 0.0 -3,-6 0.2184 6 9.954 MINOR ENSMUSG00000032621 Srek1 ENSMUST00000210269 - NO_TRANSLATION retained_intron ENSMUSG00000032621 Srek1 ENSMUST00000211491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032621 Srek1 ENSMUST00000210643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038080 Kdm1b ENSMUST00000131120 - NO_TRANSLATION retained_intron ENSMUSG00000038080 Kdm1b ENSMUST00000143518 ENSMUSP00000114999 TRANSLATION protein_coding start - 1 443.0 37.0 10.05 0.0 309.4 0.0 -4,-5 0.0093 4 -2.0 MINOR ENSMUSG00000038080 Kdm1b ENSMUST00000037025 ENSMUSP00000038373 TRANSLATION protein_coding - CCDS26489.1 1 826.0 49.0 16.55 4.5 363.2 0.0 -4,-2 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000038080 Kdm1b ENSMUST00000128977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038080 Kdm1b ENSMUST00000143868 ENSMUSP00000117793 TRANSLATION protein_coding stop - 3 176.0 11.0 4.0 0.0 36.1 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000025876 Unc5a ENSMUST00000136852 ENSMUSP00000116585 TRANSLATION protein_coding start/stop - 3 167.0 0.0 1.5 0.0 0.0 2.0 -4,-7 0.0009 2 -2.0 MINOR ENSMUSG00000025876 Unc5a ENSMUST00000142906 - NO_TRANSLATION retained_intron ENSMUSG00000025876 Unc5a ENSMUST00000137967 ENSMUSP00000115531 TRANSLATION protein_coding start - 2 128.0 0.0 1.8 0.0 94.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025876 Unc5a ENSMUST00000026994 ENSMUSP00000026994 TRANSLATION protein_coding - CCDS26537.1 1 898.0 0.0 13.63 6.4 459.1 2.0 3,-2 1.0 12 13.714 PRINCIPAL:1 ENSMUSG00000025876 Unc5a ENSMUST00000109994 ENSMUSP00000105621 TRANSLATION protein_coding - CCDS79188.1 1 842.0 0.0 12.63 7.3 424.2 2.0 3,-2 0.609 11 9.908 MINOR ENSMUSG00000078926 Cdc20b ENSMUST00000180543 ENSMUSP00000137651 TRANSLATION protein_coding start - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078926 Cdc20b ENSMUST00000109244 ENSMUSP00000104867 TRANSLATION protein_coding - CCDS59591.1 5 519.0 0.0 5.6 5.4 60.4 0.0 -4,-7 1.0 - 9.334 PRINCIPAL:4 ENSMUSG00000078926 Cdc20b ENSMUST00000181117 ENSMUSP00000137915 TRANSLATION protein_coding - - 5 515.0 0.0 5.6 5.4 61.5 0.0 -4,-7 0.8859 - 10.0 ALTERNATIVE:1 ENSMUSG00000078926 Cdc20b ENSMUST00000181568 ENSMUSP00000137849 TRANSLATION protein_coding - - 5 477.0 0.0 4.8 3.2 60.4 0.0 -4,-7 0.5073 - 6.732 MINOR ENSMUSG00000078926 Cdc20b ENSMUST00000181741 ENSMUSP00000137759 TRANSLATION protein_coding start - 3 42.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000006715 Gmnn ENSMUST00000177253 ENSMUSP00000134986 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006715 Gmnn ENSMUST00000006898 ENSMUSP00000006898 TRANSLATION protein_coding - CCDS26378.1 1 206.0 0.0 2.65 9.2 258.2 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000006715 Gmnn ENSMUST00000110382 ENSMUSP00000106011 TRANSLATION protein_coding - CCDS26378.1 1 206.0 0.0 2.65 9.2 258.2 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000006715 Gmnn ENSMUST00000176890 ENSMUSP00000135006 TRANSLATION protein_coding stop - 5 167.0 0.0 2.65 0.0 247.3 0.0 -4,-6 0.0205 1 -2.0 MINOR ENSMUSG00000006715 Gmnn ENSMUST00000175689 ENSMUSP00000135823 TRANSLATION protein_coding stop - 5 199.0 0.0 2.65 0.0 258.2 0.0 -4,-6 0.0371 1 -2.0 MINOR ENSMUSG00000038651 Sycp2l ENSMUST00000141292 ENSMUSP00000121296 TRANSLATION protein_coding start/stop - 3 253.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0417 - -2.0 MINOR ENSMUSG00000038651 Sycp2l ENSMUST00000124093 ENSMUSP00000115127 TRANSLATION protein_coding - - 5 842.0 0.0 9.78 0.0 0.0 0.0 -4,-5 0.6825 - 6.0 PRINCIPAL:1 ENSMUSG00000038651 Sycp2l ENSMUST00000145810 - NO_TRANSLATION retained_intron ENSMUSG00000021376 Tpmt ENSMUST00000154802 ENSMUSP00000121827 TRANSLATION protein_coding stop - 3 182.0 18.0 4.83 0.0 199.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000021376 Tpmt ENSMUST00000136864 ENSMUSP00000120081 TRANSLATION protein_coding stop - 5 188.0 18.0 5.16 0.0 206.7 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000021376 Tpmt ENSMUST00000224970 ENSMUSP00000152893 TRANSLATION protein_coding start - - 83.0 0.0 0.0 0.0 0.0 0.0 0,-2 0.0036 - -2.0 MINOR ENSMUSG00000021376 Tpmt ENSMUST00000151509 ENSMUSP00000120564 TRANSLATION protein_coding start - 5 188.0 18.0 4.05445 0.0 175.7 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000021376 Tpmt ENSMUST00000133100 - NO_TRANSLATION retained_intron ENSMUSG00000021376 Tpmt ENSMUST00000124948 ENSMUSP00000115361 TRANSLATION protein_coding stop - 3 93.0 7.0 1.75 0.0 57.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021376 Tpmt ENSMUST00000110118 ENSMUSP00000105745 TRANSLATION protein_coding - - 1 205.0 18.0 5.82 0.0 235.0 0.0 -4,-5 0.0012 11 13.872 MINOR ENSMUSG00000021376 Tpmt ENSMUST00000021806 ENSMUSP00000021806 TRANSLATION protein_coding - CCDS26488.1 1 240.0 18.0 6.82 0.1 270.5 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000021716 Srek1ip1 ENSMUST00000147061 - NO_TRANSLATION retained_intron ENSMUSG00000021716 Srek1ip1 ENSMUST00000145661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021716 Srek1ip1 ENSMUST00000156105 ENSMUSP00000122592 TRANSLATION nonsense_mediated_decay - - 1 79.0 4.0 0.0 0.0 32.0 0.0 -4,-5 0.0403 1 -2.0 MINOR ENSMUSG00000021716 Srek1ip1 ENSMUST00000137278 - NO_TRANSLATION retained_intron ENSMUSG00000021716 Srek1ip1 ENSMUST00000022230 ENSMUSP00000022230 TRANSLATION protein_coding - CCDS26753.1 1 153.0 4.0 0.0 0.4 30.2 0.0 -4,-5 0.834 1 9.664 PRINCIPAL:1 ENSMUSG00000094248 H2ac23 ENSMUST00000091745 ENSMUSP00000089339 TRANSLATION protein_coding - CCDS49214.1 - 130.0 0.0 1.0 11.0 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034891 Sncb ENSMUST00000134110 ENSMUSP00000116296 TRANSLATION protein_coding - CCDS36670.1 3 133.0 0.0 2.628 11.3 155.4 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000034891 Sncb ENSMUST00000153829 - NO_TRANSLATION retained_intron ENSMUSG00000034891 Sncb ENSMUST00000036825 ENSMUSP00000043074 TRANSLATION protein_coding - CCDS36670.1 1 133.0 0.0 2.628 11.3 155.4 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000034891 Sncb ENSMUST00000138067 - NO_TRANSLATION retained_intron ENSMUSG00000052565 H1f3 ENSMUST00000045301 ENSMUSP00000044395 TRANSLATION protein_coding - CCDS26346.1 - 221.0 0.0 0.6 0.0 81.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042364 Snx18 ENSMUST00000109241 ENSMUSP00000104864 TRANSLATION protein_coding - CCDS36784.1 1 615.0 0.0 1.5 3.1 481.2 0.0 -4,-6 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000042364 Snx18 ENSMUST00000223993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042364 Snx18 ENSMUST00000224883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057170 Prl3d1 ENSMUST00000082079 ENSMUSP00000080731 TRANSLATION protein_coding - - 1 223.0 0.0 2.4 0.4 237.7 0.0 4,-1 0.8273 - 8.0 ALTERNATIVE:2 ENSMUSG00000057170 Prl3d1 ENSMUST00000225330 ENSMUSP00000152890 TRANSLATION protein_coding - CCDS56874.1 - 224.0 0.0 2.4 0.4 237.7 0.0 3,-1 0.8411 - 8.0 PRINCIPAL:4 ENSMUSG00000050377 Il31ra ENSMUST00000225397 ENSMUSP00000153298 TRANSLATION protein_coding stop - - 165.0 0.0 3.75 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000050377 Il31ra ENSMUST00000051756 ENSMUSP00000058045 TRANSLATION protein_coding - CCDS36781.1 1 716.0 0.0 11.5 0.4 30.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050377 Il31ra ENSMUST00000223752 ENSMUSP00000153660 TRANSLATION nonsense_mediated_decay - - - 57.0 0.0 1.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000050377 Il31ra ENSMUST00000223819 ENSMUSP00000152979 TRANSLATION nonsense_mediated_decay - - - 662.0 0.0 11.5 0.0 30.3 0.0 -3,-6 0.0497 - -2.0 MINOR ENSMUSG00000050377 Il31ra ENSMUST00000224576 ENSMUSP00000153425 TRANSLATION nonsense_mediated_decay - - - 57.0 0.0 1.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000050377 Il31ra ENSMUST00000223577 - NO_TRANSLATION retained_intron ENSMUSG00000050377 Il31ra ENSMUST00000224070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050377 Il31ra ENSMUST00000224510 ENSMUSP00000153382 TRANSLATION protein_coding - - - 635.0 0.0 9.75 0.0 30.3 0.0 -4,-5 0.0289 - 8.502 MINOR ENSMUSG00000021598 Med10 ENSMUST00000022089 ENSMUSP00000022089 TRANSLATION protein_coding - CCDS26625.1 1 135.0 0.0 3.75 34.2 126.4 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021598 Med10 ENSMUST00000222387 ENSMUSP00000152879 TRANSLATION protein_coding stop - 3 83.0 0.0 2.25 0.0 78.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021598 Med10 ENSMUST00000221893 ENSMUSP00000152144 TRANSLATION protein_coding - - 2 154.0 0.0 2.75 0.0 101.0 0.0 -4,-5 0.0003 4 8.478 MINOR ENSMUSG00000021598 Med10 ENSMUST00000220649 - NO_TRANSLATION retained_intron ENSMUSG00000021598 Med10 ENSMUST00000223376 ENSMUSP00000152842 TRANSLATION protein_coding stop - 3 100.0 0.0 2.75 0.0 100.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021598 Med10 ENSMUST00000221045 - NO_TRANSLATION retained_intron ENSMUSG00000021640 Naip1 ENSMUST00000221727 ENSMUSP00000152253 TRANSLATION protein_coding - - 1 401.0 12.0 5.5 0.0 194.4 0.0 -4,-5 0.0009 1 1.332 MINOR ENSMUSG00000021640 Naip1 ENSMUST00000022142 ENSMUSP00000022142 TRANSLATION protein_coding - CCDS26729.1 1 1403.0 19.0 12.25 1.8 308.8 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000021640 Naip1 ENSMUST00000221943 ENSMUSP00000152120 TRANSLATION nonsense_mediated_decay - - 1 388.0 12.0 5.5 0.0 194.4 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000021640 Naip1 ENSMUST00000222155 ENSMUSP00000152583 TRANSLATION protein_coding - CCDS26729.1 1 1403.0 19.0 12.25 1.8 308.8 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000055341 Zfp457 ENSMUST00000225338 ENSMUSP00000153259 TRANSLATION protein_coding start - - 69.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000055341 Zfp457 ENSMUST00000192242 - NO_TRANSLATION retained_intron ENSMUSG00000055341 Zfp457 ENSMUST00000224325 ENSMUSP00000153220 TRANSLATION protein_coding start - - 519.0 60.0 1.0 0.0 187.8 0.0 -4,-7 0.0047 - -2.0 MINOR ENSMUSG00000055341 Zfp457 ENSMUST00000225090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055341 Zfp457 ENSMUST00000049705 ENSMUSP00000053879 TRANSLATION protein_coding - CCDS36711.1 5 647.0 67.0 2.4 0.0 289.3 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000052957 Gas1 ENSMUST00000065086 ENSMUSP00000064555 TRANSLATION protein_coding - - - 343.0 0.0 0.0 0.0 23.2 0.0 1,-4 0.7449 5 2.0 PRINCIPAL:2 ENSMUSG00000052957 Gas1 ENSMUST00000223933 ENSMUSP00000153311 TRANSLATION protein_coding - CCDS26579.1 - 384.0 0.0 0.0 0.4 23.2 0.0 -4,-7 0.2625 5 2.0 ALTERNATIVE:2 ENSMUSG00000057531 Dtnbp1 ENSMUST00000222583 ENSMUSP00000152812 TRANSLATION nonsense_mediated_decay - - 5 271.0 0.0 3.66 2.1 209.7 0.0 -4,-5 0.503 2 -2.0 MINOR ENSMUSG00000057531 Dtnbp1 ENSMUST00000222990 ENSMUSP00000152407 TRANSLATION nonsense_mediated_decay - - 5 66.0 0.0 0.95 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000057531 Dtnbp1 ENSMUST00000072329 ENSMUSP00000072170 TRANSLATION protein_coding - CCDS36647.1 1 352.0 0.0 4.94 2.1 209.7 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:2 ENSMUSG00000057531 Dtnbp1 ENSMUST00000223524 ENSMUSP00000152855 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057531 Dtnbp1 ENSMUST00000221413 ENSMUSP00000152863 TRANSLATION nonsense_mediated_decay - - 5 247.0 0.0 4.94 0.0 74.4 0.0 -4,-5 0.0152 4 -2.0 MINOR ENSMUSG00000057531 Dtnbp1 ENSMUST00000223265 ENSMUSP00000152362 TRANSLATION nonsense_mediated_decay start - 5 54.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057531 Dtnbp1 ENSMUST00000221393 - NO_TRANSLATION retained_intron ENSMUSG00000057531 Dtnbp1 ENSMUST00000220555 ENSMUSP00000152195 TRANSLATION protein_coding - - 5 342.0 0.0 4.94 0.0 209.7 0.0 -4,-5 0.0622 4 8.0 ALTERNATIVE:2 ENSMUSG00000057531 Dtnbp1 ENSMUST00000222321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057531 Dtnbp1 ENSMUST00000222805 ENSMUSP00000152706 TRANSLATION protein_coding - - 1 178.0 0.0 3.94 0.0 0.0 0.0 -4,-5 0.0 4 4.002 MINOR ENSMUSG00000021559 Dapk1 ENSMUST00000224340 - NO_TRANSLATION retained_intron ENSMUSG00000021559 Dapk1 ENSMUST00000044083 ENSMUSP00000040825 TRANSLATION protein_coding - CCDS26581.1 1 1430.0 29.0 12.3 25.8 475.3 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000021559 Dapk1 ENSMUST00000224789 ENSMUSP00000153205 TRANSLATION nonsense_mediated_decay start - - 15.0 1.0 0.5 0.0 0.0 0.0 -4,-5 0.0162 - -2.0 MINOR ENSMUSG00000021559 Dapk1 ENSMUST00000226059 ENSMUSP00000153607 TRANSLATION protein_coding - - - 1442.0 29.0 12.3 2.2 475.3 0.0 -4,-5 0.3587 16 18.192 MINOR ENSMUSG00000021559 Dapk1 ENSMUST00000225952 - NO_TRANSLATION retained_intron ENSMUSG00000021559 Dapk1 ENSMUST00000077453 ENSMUSP00000076666 TRANSLATION protein_coding - CCDS26581.1 1 1430.0 29.0 12.3 25.8 475.3 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000021559 Dapk1 ENSMUST00000225632 - NO_TRANSLATION retained_intron ENSMUSG00000058385 H2bc8 ENSMUST00000079251 ENSMUSP00000078239 TRANSLATION protein_coding - CCDS26349.1 - 126.0 0.0 1.0 12.5 91.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021712 Trim23 ENSMUST00000069174 ENSMUSP00000069371 TRANSLATION protein_coding - - 1 554.0 23.0 5.2 2.2 296.6 0.0 -4,-7 0.2312 1 16.182 MINOR ENSMUSG00000021712 Trim23 ENSMUST00000069187 ENSMUSP00000070767 TRANSLATION protein_coding - - 1 513.0 23.0 6.2 0.0 296.6 0.0 -4,-7 0.0649 - 18.0 MINOR ENSMUSG00000021712 Trim23 ENSMUST00000022225 ENSMUSP00000022225 TRANSLATION protein_coding - - 1 574.0 23.0 5.2 27.5 296.6 0.0 -4,-7 1.0 1 20.002 PRINCIPAL:1 ENSMUSG00000099917 Vmn1r215 ENSMUST00000228092 ENSMUSP00000154763 TRANSLATION protein_coding - CCDS26330.1 - 300.0 0.0 0.0 2.6 123.5 5.0 -3,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000099917 Vmn1r215 ENSMUST00000072972 ENSMUSP00000072739 TRANSLATION protein_coding - CCDS26330.1 - 300.0 0.0 0.0 2.6 123.5 5.0 -3,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000045474 Or2ad1 ENSMUST00000055298 ENSMUSP00000050942 TRANSLATION protein_coding - CCDS26269.1 - 314.0 0.0 1.0 7.9 165.7 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000045474 Or2ad1 ENSMUST00000216039 ENSMUSP00000149549 TRANSLATION protein_coding - CCDS26269.1 3 314.0 0.0 1.0 7.9 165.7 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000069308 H2bc22 ENSMUST00000110473 ENSMUSP00000106099 TRANSLATION protein_coding - CCDS26298.2 1 138.0 0.0 1.5 0.1 92.1 0.0 -4,-5 0.2028 - 6.0 ALTERNATIVE:2 ENSMUSG00000069308 H2bc22 ENSMUST00000102982 ENSMUSP00000100047 TRANSLATION protein_coding - CCDS79168.1 - 126.0 0.0 1.0 12.5 92.1 0.0 -4,-5 1.0 - 7.002 PRINCIPAL:2 ENSMUSG00000021339 Mrs2 ENSMUST00000021772 ENSMUSP00000021772 TRANSLATION protein_coding - CCDS26385.2 5 434.0 0.0 1.302 0.1 0.0 0.0 -2,2 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000021339 Mrs2 ENSMUST00000225296 - NO_TRANSLATION retained_intron ENSMUSG00000021339 Mrs2 ENSMUST00000224894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021339 Mrs2 ENSMUST00000224170 - NO_TRANSLATION retained_intron ENSMUSG00000037966 Ninj1 ENSMUST00000131280 ENSMUSP00000121186 TRANSLATION nonsense_mediated_decay - - 5 110.0 0.0 0.5 0.0 87.9 1.0 -4,-5 0.0174 1 -2.0 MINOR ENSMUSG00000037966 Ninj1 ENSMUST00000150555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037966 Ninj1 ENSMUST00000153819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037966 Ninj1 ENSMUST00000049022 ENSMUSP00000036740 TRANSLATION protein_coding - CCDS26497.1 1 152.0 0.0 0.5 10.0 124.6 2.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000037966 Ninj1 ENSMUST00000120733 ENSMUSP00000114130 TRANSLATION protein_coding - - 5 210.0 0.0 0.5 0.0 124.6 2.0 -4,-5 0.0576 2 12.0 MINOR ENSMUSG00000069248 Serpinb6e ENSMUST00000145221 ENSMUSP00000117577 TRANSLATION protein_coding stop - 3 101.0 0.0 0.4 0.0 30.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000069248 Serpinb6e ENSMUST00000110275 ENSMUSP00000105904 TRANSLATION protein_coding - CCDS26440.2 5 429.0 0.0 4.2 0.0 394.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000069297 Vmn1r194 ENSMUST00000091737 ENSMUSP00000089331 TRANSLATION protein_coding - CCDS36614.1 - 296.0 0.0 0.0 1.0 123.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033520 Idi2 ENSMUST00000038598 ENSMUSP00000036621 TRANSLATION protein_coding - CCDS26235.1 1 227.0 13.0 4.0 22.6 63.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000094637 Vmn1r204 ENSMUST00000091728 ENSMUSP00000089321 TRANSLATION protein_coding - CCDS36615.1 - 302.0 0.0 0.0 1.0 134.3 4.0 1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094637 Vmn1r204 ENSMUST00000228195 ENSMUSP00000154519 TRANSLATION protein_coding - CCDS36615.1 - 302.0 0.0 0.0 1.0 134.3 4.0 1,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038025 Phf2 ENSMUST00000035540 ENSMUSP00000047308 TRANSLATION protein_coding - CCDS26496.1 1 1096.0 24.0 10.5 1.2 83.0 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000009734 Pou6f2 ENSMUST00000139064 ENSMUSP00000114173 TRANSLATION protein_coding start - 1 637.0 0.0 1.75 0.0 145.5 0.0 -4,-6 0.0765 - -2.0 MINOR ENSMUSG00000009734 Pou6f2 ENSMUST00000175768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009734 Pou6f2 ENSMUST00000222900 - NO_TRANSLATION retained_intron ENSMUSG00000009734 Pou6f2 ENSMUST00000175703 ENSMUSP00000139282 TRANSLATION protein_coding start - 5 601.0 0.0 2.75 0.0 162.3 0.0 -4,-6 0.1708 - -2.0 MINOR ENSMUSG00000009734 Pou6f2 ENSMUST00000184299 ENSMUSP00000138840 TRANSLATION protein_coding - - 1 172.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.3659 - 0.0 PRINCIPAL:1 ENSMUSG00000009734 Pou6f2 ENSMUST00000176898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009734 Pou6f2 ENSMUST00000176795 ENSMUSP00000134780 TRANSLATION nonsense_mediated_decay start - 5 142.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0007 - -2.0 MINOR ENSMUSG00000009734 Pou6f2 ENSMUST00000223058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021509 Slc25a48 ENSMUST00000021971 ENSMUSP00000021971 TRANSLATION protein_coding - CCDS26561.1 1 306.0 8.0 4.18 12.4 197.2 0.0 -4,-7 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000021481 Zfp346 ENSMUST00000161315 ENSMUSP00000124397 TRANSLATION protein_coding stop - 2 151.0 4.0 2.0 0.0 26.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021481 Zfp346 ENSMUST00000161077 ENSMUSP00000125204 TRANSLATION protein_coding start - 3 238.0 12.0 4.33 0.0 87.5 0.0 -4,-5 0.0227 4 -2.0 MINOR ENSMUSG00000021481 Zfp346 ENSMUST00000160310 - NO_TRANSLATION retained_intron ENSMUSG00000021481 Zfp346 ENSMUST00000159278 ENSMUSP00000125078 TRANSLATION protein_coding - - 5 309.0 16.0 4.33 6.3 105.5 0.0 -4,-5 0.7102 6 15.938 ALTERNATIVE:1 ENSMUSG00000021481 Zfp346 ENSMUST00000159147 ENSMUSP00000124107 TRANSLATION protein_coding - - 5 262.0 15.0 2.33 1.9 95.9 0.0 -4,-5 0.0995 7 9.662 MINOR ENSMUSG00000021481 Zfp346 ENSMUST00000161018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021481 Zfp346 ENSMUST00000021937 ENSMUSP00000021937 TRANSLATION protein_coding - CCDS26539.1 1 294.0 16.0 4.33 9.2 105.5 0.0 -4,-5 1.0 7 17.0 PRINCIPAL:2 ENSMUSG00000021481 Zfp346 ENSMUST00000162288 - NO_TRANSLATION retained_intron ENSMUSG00000021481 Zfp346 ENSMUST00000162476 ENSMUSP00000125743 TRANSLATION nonsense_mediated_decay - - 3 132.0 4.0 2.0 0.0 26.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021481 Zfp346 ENSMUST00000162653 - NO_TRANSLATION retained_intron ENSMUSG00000021481 Zfp346 ENSMUST00000162428 ENSMUSP00000125389 TRANSLATION nonsense_mediated_decay - - 5 132.0 4.0 2.0 0.0 26.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021481 Zfp346 ENSMUST00000160660 ENSMUSP00000124034 TRANSLATION nonsense_mediated_decay - - 3 135.0 4.0 2.0 0.0 26.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021481 Zfp346 ENSMUST00000161551 ENSMUSP00000124180 TRANSLATION nonsense_mediated_decay - - 5 101.0 3.0 1.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000071203 Naip5 ENSMUST00000049789 ENSMUSP00000058611 TRANSLATION protein_coding - CCDS26727.1 1 1403.0 7.0 9.1 2.1 312.5 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000021572 Cep72 ENSMUST00000222609 ENSMUSP00000152641 TRANSLATION protein_coding start - 1 470.0 0.0 2.7 0.0 0.0 0.0 -4,-5 0.0203 2 -2.0 MINOR ENSMUSG00000021572 Cep72 ENSMUST00000220483 ENSMUSP00000152600 TRANSLATION nonsense_mediated_decay - - 3 51.0 0.0 0.465 0.0 0.0 0.0 -4,-6 0.0107 - -2.0 MINOR ENSMUSG00000021572 Cep72 ENSMUST00000223031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021572 Cep72 ENSMUST00000221122 ENSMUSP00000152484 TRANSLATION protein_coding start - 1 295.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0374 1 -2.0 MINOR ENSMUSG00000021572 Cep72 ENSMUST00000223028 ENSMUSP00000152137 TRANSLATION nonsense_mediated_decay start - 2 141.0 0.0 2.465 0.0 0.0 0.0 -4,-6 0.0041 - -2.0 MINOR ENSMUSG00000021572 Cep72 ENSMUST00000223417 - NO_TRANSLATION retained_intron ENSMUSG00000021572 Cep72 ENSMUST00000036456 ENSMUSP00000037788 TRANSLATION protein_coding - CCDS26639.1 1 646.0 0.0 2.865 0.4 0.0 0.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000071452 Serpinb9h ENSMUST00000050276 ENSMUSP00000049819 TRANSLATION protein_coding - - 5 377.0 0.0 5.0 12.5 416.6 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021684 Pde8b ENSMUST00000162670 ENSMUSP00000125237 TRANSLATION protein_coding start - 1 196.0 1.0 3.425 0.0 184.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021684 Pde8b ENSMUST00000162292 ENSMUSP00000124068 TRANSLATION protein_coding - CCDS49331.1 1 788.0 6.0 7.15 1.4 406.0 0.0 -4,-5 0.5031 10 13.39 MINOR ENSMUSG00000021684 Pde8b ENSMUST00000159598 ENSMUSP00000124447 TRANSLATION protein_coding stop - 5 102.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021684 Pde8b ENSMUST00000160412 - NO_TRANSLATION retained_intron ENSMUSG00000021684 Pde8b ENSMUST00000162412 ENSMUSP00000124409 TRANSLATION protein_coding - CCDS49332.1 1 730.0 6.0 7.15 0.0 338.3 0.0 -4,-7 0.1691 7 12.0 MINOR ENSMUSG00000021684 Pde8b ENSMUST00000162882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021684 Pde8b ENSMUST00000022192 ENSMUSP00000022192 TRANSLATION protein_coding - - 5 838.0 6.0 7.15 1.0 406.0 0.0 -4,-5 0.1415 10 13.2 MINOR ENSMUSG00000021684 Pde8b ENSMUST00000162153 ENSMUSP00000124704 TRANSLATION protein_coding - CCDS84052.1 1 780.0 6.0 7.15 5.2 358.8 0.0 -4,-7 1.0 7 14.8 MINOR ENSMUSG00000021684 Pde8b ENSMUST00000162328 - NO_TRANSLATION retained_intron ENSMUSG00000021684 Pde8b ENSMUST00000172104 ENSMUSP00000128987 TRANSLATION protein_coding - - 5 830.0 6.0 7.15 1.0 459.5 0.0 -4,-5 0.3311 10 14.0 ALTERNATIVE:2 ENSMUSG00000021684 Pde8b ENSMUST00000159608 ENSMUSP00000125191 TRANSLATION protein_coding - - 5 674.0 5.0 3.915 0.0 237.7 0.0 -4,-5 0.0011 9 6.198 MINOR ENSMUSG00000021684 Pde8b ENSMUST00000162716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021684 Pde8b ENSMUST00000067082 ENSMUSP00000070465 TRANSLATION protein_coding - - 5 865.0 6.0 7.15 1.7 459.5 0.0 -4,-5 0.4084 10 14.334 PRINCIPAL:4 ENSMUSG00000021684 Pde8b ENSMUST00000160957 ENSMUSP00000125115 TRANSLATION protein_coding stop - 5 329.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0017 4 -2.0 MINOR ENSMUSG00000047789 Slc38a9 ENSMUST00000225367 - NO_TRANSLATION retained_intron ENSMUSG00000047789 Slc38a9 ENSMUST00000223581 ENSMUSP00000152914 TRANSLATION nonsense_mediated_decay - - - 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047789 Slc38a9 ENSMUST00000223839 - NO_TRANSLATION retained_intron ENSMUSG00000047789 Slc38a9 ENSMUST00000224703 - NO_TRANSLATION retained_intron ENSMUSG00000047789 Slc38a9 ENSMUST00000052514 ENSMUSP00000052172 TRANSLATION protein_coding - CCDS26775.1 1 560.0 0.0 7.35 16.5 106.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000047789 Slc38a9 ENSMUST00000223674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047789 Slc38a9 ENSMUST00000224252 - NO_TRANSLATION retained_intron ENSMUSG00000047789 Slc38a9 ENSMUST00000225649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101073 Vmn1r200 ENSMUST00000227326 ENSMUSP00000153883 TRANSLATION protein_coding - - - 303.0 0.0 0.0 0.0 123.0 4.0 -4,-5 0.1563 - 2.0 ALTERNATIVE:2 ENSMUSG00000101073 Vmn1r200 ENSMUST00000226901 - NO_TRANSLATION retained_intron ENSMUSG00000101073 Vmn1r200 ENSMUST00000226157 ENSMUSP00000154259 TRANSLATION protein_coding - CCDS26318.1 - 312.0 0.0 0.0 1.4 123.0 4.0 -4,-5 1.0 - 3.0 PRINCIPAL:2 ENSMUSG00000101073 Vmn1r200 ENSMUST00000228726 ENSMUSP00000154179 TRANSLATION protein_coding - CCDS26318.1 - 312.0 0.0 0.0 1.4 123.0 4.0 -4,-5 1.0 - 3.0 PRINCIPAL:2 ENSMUSG00000101073 Vmn1r200 ENSMUST00000074324 ENSMUSP00000073934 TRANSLATION protein_coding - CCDS26318.1 - 312.0 0.0 0.0 1.4 123.0 4.0 -4,-5 1.0 - 3.0 PRINCIPAL:2 ENSMUSG00000044444 Pfn3 ENSMUST00000054146 ENSMUSP00000054053 TRANSLATION protein_coding - CCDS26545.1 - 137.0 0.0 1.0 24.0 68.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000055194 Actbl2 ENSMUST00000054716 ENSMUSP00000052086 TRANSLATION protein_coding - CCDS26768.1 - 376.0 35.0 1.0 36.9 486.8 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000038415 Foxq1 ENSMUST00000042118 ENSMUSP00000036952 TRANSLATION protein_coding - CCDS26423.1 - 400.0 0.0 0.4 2.1 103.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000069302 H2ac12 ENSMUST00000091742 ENSMUSP00000089336 TRANSLATION protein_coding - CCDS26304.1 - 128.0 0.0 1.0 11.0 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000017756 Slc12a7 ENSMUST00000221813 - NO_TRANSLATION retained_intron ENSMUSG00000017756 Slc12a7 ENSMUST00000017900 ENSMUSP00000017900 TRANSLATION protein_coding - CCDS26635.1 1 1083.0 0.0 19.05 7.3 365.1 0.0 -4,-5 1.0 19 14.0 PRINCIPAL:1 ENSMUSG00000017756 Slc12a7 ENSMUST00000222309 - NO_TRANSLATION retained_intron ENSMUSG00000017756 Slc12a7 ENSMUST00000221196 - NO_TRANSLATION retained_intron ENSMUSG00000017756 Slc12a7 ENSMUST00000222742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017756 Slc12a7 ENSMUST00000220535 ENSMUSP00000152846 TRANSLATION nonsense_mediated_decay - - 1 151.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000017756 Slc12a7 ENSMUST00000220522 - NO_TRANSLATION retained_intron ENSMUSG00000017756 Slc12a7 ENSMUST00000220686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017756 Slc12a7 ENSMUST00000223454 - NO_TRANSLATION retained_intron ENSMUSG00000017756 Slc12a7 ENSMUST00000222253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017756 Slc12a7 ENSMUST00000223008 - NO_TRANSLATION retained_intron ENSMUSG00000058900 Rsl1 ENSMUST00000021997 ENSMUSP00000021997 TRANSLATION protein_coding - CCDS26613.1 1 485.0 50.0 1.16 0.0 306.2 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000058900 Rsl1 ENSMUST00000225334 ENSMUSP00000153578 TRANSLATION nonsense_mediated_decay - - - 40.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058900 Rsl1 ENSMUST00000249257 ENSMUSP00000159637 TRANSLATION protein_coding - - - 472.0 50.0 1.16 0.1 306.2 0.0 -4,-7 0.2129 - 14.0 ALTERNATIVE:2 ENSMUSG00000021340 Gpld1 ENSMUST00000128315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021340 Gpld1 ENSMUST00000021773 ENSMUSP00000021773 TRANSLATION protein_coding - CCDS26384.1 5 842.0 17.0 1.66 7.7 197.7 0.0 1,-3 1.0 22 20.0 PRINCIPAL:1 ENSMUSG00000021340 Gpld1 ENSMUST00000223873 - NO_TRANSLATION retained_intron ENSMUSG00000045273 Cenph ENSMUST00000136694 - NO_TRANSLATION retained_intron ENSMUSG00000045273 Cenph ENSMUST00000075550 ENSMUSP00000074988 TRANSLATION protein_coding - CCDS26738.1 1 241.0 0.0 5.9 2.9 89.8 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000108534 Or2b2b ENSMUST00000216083 ENSMUSP00000149423 TRANSLATION protein_coding - CCDS36610.1 5 313.0 0.0 1.0 9.2 186.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108534 Or2b2b ENSMUST00000205788 ENSMUSP00000146159 TRANSLATION protein_coding - CCDS36610.1 5 313.0 0.0 1.0 9.2 186.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000108534 Or2b2b ENSMUST00000079135 ENSMUSP00000074361 TRANSLATION protein_coding - CCDS36610.1 - 313.0 0.0 1.0 9.2 186.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063130 Calml3 ENSMUST00000222976 ENSMUSP00000152735 TRANSLATION protein_coding start - 5 115.0 23.0 1.0495 0.0 80.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000063130 Calml3 ENSMUST00000077698 ENSMUSP00000076880 TRANSLATION protein_coding - CCDS26214.1 - 149.0 37.0 2.5 36.9 117.3 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000015671 Psma2 ENSMUST00000221168 ENSMUSP00000152327 TRANSLATION protein_coding start - 2 183.0 0.0 5.0 0.0 175.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000015671 Psma2 ENSMUST00000170836 ENSMUSP00000129767 TRANSLATION protein_coding - CCDS36602.1 1 234.0 0.0 6.58 36.9 241.1 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000021499 Catsper3 ENSMUST00000021961 ENSMUSP00000021961 TRANSLATION protein_coding - CCDS56885.1 1 395.0 0.0 3.0 1.7 110.6 4.0 -4,-1 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000021499 Catsper3 ENSMUST00000109898 ENSMUSP00000105524 TRANSLATION protein_coding - CCDS26555.1 1 382.0 0.0 2.6 0.0 98.4 3.0 -4,-2 0.0618 1 10.47 MINOR ENSMUSG00000021685 Otp ENSMUST00000022195 ENSMUSP00000022195 TRANSLATION protein_coding - CCDS26695.1 1 325.0 0.0 0.5 18.6 117.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021685 Otp ENSMUST00000184985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094898 Vmn1r201 ENSMUST00000226330 ENSMUSP00000154490 TRANSLATION protein_coding - CCDS26319.1 - 300.0 0.0 0.0 1.9 134.5 5.0 0,-3 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000094898 Vmn1r201 ENSMUST00000091730 ENSMUSP00000089324 TRANSLATION protein_coding - CCDS26319.1 - 300.0 0.0 0.0 1.9 134.5 5.0 0,-3 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000094898 Vmn1r201 ENSMUST00000226965 ENSMUSP00000154790 TRANSLATION protein_coding - CCDS26319.1 - 300.0 0.0 0.0 1.9 134.5 5.0 0,-3 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000042243 BC051665 ENSMUST00000026078 ENSMUSP00000026078 TRANSLATION protein_coding - CCDS26582.1 1 330.0 4.0 6.6 14.5 319.5 0.0 3,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000025453 Nnt ENSMUST00000144599 - NO_TRANSLATION retained_intron ENSMUSG00000025453 Nnt ENSMUST00000099149 ENSMUSP00000096753 TRANSLATION protein_coding - CCDS84067.1 1 835.0 45.0 14.5 0.0 867.9 15.0 -3,-1 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000025453 Nnt ENSMUST00000133627 - NO_TRANSLATION retained_intron ENSMUSG00000025453 Nnt ENSMUST00000109204 ENSMUSP00000104827 TRANSLATION protein_coding - - 5 713.0 24.0 11.5 0.0 615.8 15.0 -3,-1 0.0147 20 0.0 MINOR ENSMUSG00000025453 Nnt ENSMUST00000069902 ENSMUSP00000070564 TRANSLATION protein_coding - - 1 721.0 44.0 12.5 0.0 823.2 9.0 -3,-1 0.0684 21 10.65 MINOR ENSMUSG00000060739 Nsa2 ENSMUST00000224980 - NO_TRANSLATION retained_intron ENSMUSG00000060739 Nsa2 ENSMUST00000073456 ENSMUSP00000073161 TRANSLATION protein_coding - CCDS36756.1 1 260.0 0.0 4.5 35.5 164.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000060739 Nsa2 ENSMUST00000225410 ENSMUSP00000153113 TRANSLATION protein_coding - - - 233.0 0.0 3.75 0.0 105.1 0.0 -4,-5 0.0002 4 6.924 MINOR ENSMUSG00000041112 Elmo1 ENSMUST00000221595 ENSMUSP00000152200 TRANSLATION protein_coding start/stop - 5 193.0 0.0 4.25 0.0 111.9 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000041112 Elmo1 ENSMUST00000220751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041112 Elmo1 ENSMUST00000180767 - NO_TRANSLATION retained_intron ENSMUSG00000041112 Elmo1 ENSMUST00000180626 ENSMUSP00000152595 TRANSLATION protein_coding - - 1 420.0 0.0 9.25 0.0 266.2 0.0 -4,-5 0.0006 7 0.0 MINOR ENSMUSG00000041112 Elmo1 ENSMUST00000181429 - NO_TRANSLATION retained_intron ENSMUSG00000041112 Elmo1 ENSMUST00000221067 ENSMUSP00000152261 TRANSLATION protein_coding stop - 3 25.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000041112 Elmo1 ENSMUST00000072519 ENSMUSP00000072334 TRANSLATION protein_coding - CCDS26265.1 1 727.0 0.0 17.0 34.7 485.7 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000021714 Cenpk ENSMUST00000224098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021714 Cenpk ENSMUST00000224179 - NO_TRANSLATION retained_intron ENSMUSG00000021714 Cenpk ENSMUST00000022227 ENSMUSP00000022227 TRANSLATION protein_coding - CCDS26749.1 1 306.0 0.0 0.0 0.0 404.2 0.0 -4,-7 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000021714 Cenpk ENSMUST00000225557 ENSMUSP00000153237 TRANSLATION protein_coding stop - - 94.0 0.0 0.0 0.0 96.2 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000021714 Cenpk ENSMUST00000224857 ENSMUSP00000152995 TRANSLATION nonsense_mediated_decay - - - 91.0 0.0 0.0 0.0 94.9 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000021714 Cenpk ENSMUST00000225939 - NO_TRANSLATION retained_intron ENSMUSG00000021714 Cenpk ENSMUST00000070761 ENSMUSP00000070910 TRANSLATION protein_coding - CCDS26750.1 1 253.0 0.0 0.0 0.0 278.3 0.0 -4,-5 0.041 2 0.0 MINOR ENSMUSG00000021714 Cenpk ENSMUST00000224500 ENSMUSP00000153688 TRANSLATION nonsense_mediated_decay - - - 91.0 0.0 0.0 0.0 94.9 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000021458 Aopep ENSMUST00000223185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000220485 ENSMUSP00000152277 TRANSLATION nonsense_mediated_decay start - 3 19.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021458 Aopep ENSMUST00000221164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000222907 ENSMUSP00000152666 TRANSLATION nonsense_mediated_decay start - 3 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021458 Aopep ENSMUST00000091560 ENSMUSP00000089148 TRANSLATION protein_coding - CCDS36699.1 1 823.0 3.0 7.1075 7.1 146.1 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000021458 Aopep ENSMUST00000220884 ENSMUSP00000152100 TRANSLATION nonsense_mediated_decay start - 5 155.0 0.0 1.7795 0.0 70.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021458 Aopep ENSMUST00000221501 - NO_TRANSLATION retained_intron ENSMUSG00000021458 Aopep ENSMUST00000222181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000223007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000221364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000220457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000223204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000221820 ENSMUSP00000152578 TRANSLATION protein_coding start/stop - 5 110.0 0.0 0.8495 0.0 32.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021458 Aopep ENSMUST00000221108 - NO_TRANSLATION retained_intron ENSMUSG00000021458 Aopep ENSMUST00000222846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000221676 ENSMUSP00000152622 TRANSLATION nonsense_mediated_decay start - 3 69.0 0.0 0.5 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000021458 Aopep ENSMUST00000159152 ENSMUSP00000124560 TRANSLATION protein_coding start - 1 167.0 0.0 1.7795 0.0 70.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021458 Aopep ENSMUST00000220863 ENSMUSP00000152528 TRANSLATION protein_coding start - 1 715.0 3.0 7.1075 0.0 146.1 0.0 -4,-5 0.0376 - -2.0 MINOR ENSMUSG00000021458 Aopep ENSMUST00000222929 ENSMUSP00000152296 TRANSLATION protein_coding start - 1 182.0 0.0 1.7795 0.0 70.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021458 Aopep ENSMUST00000220563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000220885 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000222282 ENSMUSP00000152404 TRANSLATION protein_coding start - 2 170.0 0.0 2.935 0.0 70.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021458 Aopep ENSMUST00000222680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000221938 - NO_TRANSLATION retained_intron ENSMUSG00000021458 Aopep ENSMUST00000222721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000220670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021458 Aopep ENSMUST00000223073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021485 Mxd3 ENSMUST00000225561 - NO_TRANSLATION retained_intron ENSMUSG00000021485 Mxd3 ENSMUST00000141644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021485 Mxd3 ENSMUST00000146181 - NO_TRANSLATION retained_intron ENSMUSG00000021485 Mxd3 ENSMUST00000021941 ENSMUSP00000021941 TRANSLATION protein_coding - CCDS26543.1 1 206.0 0.0 2.48 10.6 39.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069294 Vmn1r197 ENSMUST00000227017 ENSMUSP00000154632 TRANSLATION protein_coding - CCDS26315.1 - 298.0 0.0 0.0 1.4 134.2 7.0 -3,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000069294 Vmn1r197 ENSMUST00000226225 ENSMUSP00000153747 TRANSLATION protein_coding - CCDS26315.1 - 298.0 0.0 0.0 1.4 134.2 7.0 -3,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000069294 Vmn1r197 ENSMUST00000091734 ENSMUSP00000089328 TRANSLATION protein_coding - CCDS26315.1 - 298.0 0.0 0.0 1.4 134.2 7.0 -3,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000021448 Shc3 ENSMUST00000021898 ENSMUSP00000021898 TRANSLATION protein_coding - CCDS49265.1 1 474.0 0.0 7.23 0.0 228.6 0.0 -4,-7 0.2772 9 8.0 ALTERNATIVE:2 ENSMUSG00000021448 Shc3 ENSMUST00000221850 - NO_TRANSLATION retained_intron ENSMUSG00000021448 Shc3 ENSMUST00000239056 ENSMUSP00000158865 TRANSLATION protein_coding - - - 594.0 0.0 7.23 2.1 228.6 0.0 -4,-7 1.0 12 9.0 PRINCIPAL:2 ENSMUSG00000021448 Shc3 ENSMUST00000223543 ENSMUSP00000152080 TRANSLATION protein_coding - - 1 461.0 0.0 5.1 0.0 166.5 0.0 -4,-7 0.0 8 1.74 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000135275 ENSMUSP00000119583 TRANSLATION protein_coding start - 5 700.0 6.0 8.8675 0.0 312.3 0.0 -1,-3 0.1053 6 -2.0 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000079975 ENSMUSP00000078891 TRANSLATION protein_coding - - 1 698.0 6.0 8.8675 7.9 312.3 0.0 -4,-7 0.7965 6 14.705 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000120671 ENSMUSP00000112991 TRANSLATION protein_coding - - 5 803.0 6.0 8.8675 5.3 312.3 0.0 -4,-5 0.4537 7 14.015 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000117879 ENSMUSP00000112774 TRANSLATION protein_coding - - 1 504.0 6.0 8.1 8.0 312.3 0.0 -4,-2 0.5696 1 13.199 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000155459 ENSMUSP00000114945 TRANSLATION protein_coding start - 3 207.0 5.0 3.5 0.0 74.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000151429 - NO_TRANSLATION retained_intron ENSMUSG00000021699 Pde4d ENSMUST00000133929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021699 Pde4d ENSMUST00000129374 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021699 Pde4d ENSMUST00000117420 ENSMUSP00000113610 TRANSLATION protein_coding - - 1 517.0 6.0 8.1 11.3 312.3 0.0 -4,-6 0.8502 1 14.078 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000177907 ENSMUSP00000136485 TRANSLATION protein_coding - CCDS49359.1 1 747.0 6.0 8.8675 9.6 312.3 0.0 -4,-5 0.8577 6 15.155 ALTERNATIVE:1 ENSMUSG00000021699 Pde4d ENSMUST00000138938 - NO_TRANSLATION retained_intron ENSMUSG00000021699 Pde4d ENSMUST00000119672 ENSMUSP00000113567 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000120664 ENSMUSP00000113024 TRANSLATION protein_coding - - 1 584.0 6.0 9.43 1.7 312.3 0.0 -4,-5 0.2756 1 14.186 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000074103 ENSMUSP00000073742 TRANSLATION protein_coding - - 1 678.0 6.0 8.8675 12.3 312.3 0.0 -4,-2 1.0 6 15.872 PRINCIPAL:4 ENSMUSG00000021699 Pde4d ENSMUST00000153234 ENSMUSP00000121592 TRANSLATION protein_coding start - 5 754.0 6.0 8.8675 0.0 312.3 0.0 -4,-6 0.0315 8 -2.0 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000134973 - NO_TRANSLATION retained_intron ENSMUSG00000021699 Pde4d ENSMUST00000119507 ENSMUSP00000114089 TRANSLATION protein_coding - - 5 703.0 6.0 8.8675 0.3 312.3 0.0 -4,-5 0.0949 6 12.872 MINOR ENSMUSG00000021699 Pde4d ENSMUST00000152630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021699 Pde4d ENSMUST00000151111 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021699 Pde4d ENSMUST00000122041 ENSMUSP00000113488 TRANSLATION protein_coding - CCDS49359.1 1 747.0 6.0 8.8675 9.6 312.3 0.0 -4,-5 0.8577 6 15.155 ALTERNATIVE:1 ENSMUSG00000002808 Epdr1 ENSMUST00000220944 ENSMUSP00000152124 TRANSLATION protein_coding - - 3 122.0 0.0 2.0 0.0 113.9 0.0 -4,-5 0.0041 4 8.052 MINOR ENSMUSG00000002808 Epdr1 ENSMUST00000221014 ENSMUSP00000152111 TRANSLATION protein_coding - - 1 90.0 0.0 1.0 1.0 0.0 0.0 0,-3 0.0301 2 1.002 MINOR ENSMUSG00000002808 Epdr1 ENSMUST00000002885 ENSMUSP00000002885 TRANSLATION protein_coding - CCDS26260.1 1 224.0 0.0 3.5 4.9 129.7 0.0 0,-3 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000002808 Epdr1 ENSMUST00000220755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038068 Rnf144b ENSMUST00000068891 ENSMUSP00000071017 TRANSLATION protein_coding - CCDS26491.1 1 301.0 19.0 2.93 12.5 80.0 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000038068 Rnf144b ENSMUST00000110111 ENSMUSP00000105738 TRANSLATION protein_coding - CCDS26491.1 1 301.0 19.0 2.93 12.5 80.0 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000046006 Gapt ENSMUST00000224534 ENSMUSP00000153170 TRANSLATION protein_coding - CCDS26766.1 - 157.0 0.0 0.0 3.2 245.3 1.0 -2,-5 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000046006 Gapt ENSMUST00000058806 ENSMUSP00000053775 TRANSLATION protein_coding - CCDS26766.1 1 157.0 0.0 0.0 3.2 245.3 1.0 -2,-5 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000042417 Ccno ENSMUST00000225555 - NO_TRANSLATION retained_intron ENSMUSG00000042417 Ccno ENSMUST00000224100 - NO_TRANSLATION retained_intron ENSMUSG00000042417 Ccno ENSMUST00000038404 ENSMUSP00000040083 TRANSLATION protein_coding - CCDS36782.1 1 352.0 0.0 2.4 3.9 128.6 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000054890 Or2b7 ENSMUST00000217519 ENSMUSP00000149589 TRANSLATION protein_coding - CCDS26280.1 5 326.0 0.0 0.8 0.0 155.7 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054890 Or2b7 ENSMUST00000068163 ENSMUSP00000064142 TRANSLATION protein_coding - CCDS26280.1 - 326.0 0.0 0.8 0.0 155.7 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033799 Tasor2 ENSMUST00000221629 - NO_TRANSLATION retained_intron ENSMUSG00000033799 Tasor2 ENSMUST00000223327 ENSMUSP00000152567 TRANSLATION protein_coding stop - 5 51.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033799 Tasor2 ENSMUST00000222615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033799 Tasor2 ENSMUST00000222909 ENSMUSP00000152081 TRANSLATION protein_coding start - 1 1701.0 0.0 0.0 0.0 90.1 0.0 -4,-5 0.0362 13 -2.0 MINOR ENSMUSG00000033799 Tasor2 ENSMUST00000096069 ENSMUSP00000093774 TRANSLATION protein_coding - CCDS49201.1 1 2382.0 0.0 0.0 0.0 185.2 0.0 -4,-7 1.0 19 6.0 PRINCIPAL:1 ENSMUSG00000033799 Tasor2 ENSMUST00000222325 - NO_TRANSLATION retained_intron ENSMUSG00000033799 Tasor2 ENSMUST00000222041 - NO_TRANSLATION retained_intron ENSMUSG00000033799 Tasor2 ENSMUST00000221059 - NO_TRANSLATION retained_intron ENSMUSG00000062551 Prl2c1 ENSMUST00000110335 ENSMUSP00000105964 TRANSLATION protein_coding - - 5 228.0 0.0 2.7 0.4 252.1 0.0 3,-2 0.8316 - 8.0 PRINCIPAL:4 ENSMUSG00000062551 Prl2c1 ENSMUST00000054932 ENSMUSP00000053446 TRANSLATION protein_coding - CCDS36626.1 5 226.0 0.0 2.7 0.1 250.0 0.0 3,-2 0.6457 - 7.334 ALTERNATIVE:2 ENSMUSG00000079049 Serpinb1c ENSMUST00000021834 ENSMUSP00000021834 TRANSLATION protein_coding - CCDS26429.1 5 375.0 0.0 6.46 29.0 424.4 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000079049 Serpinb1c ENSMUST00000221019 ENSMUSP00000152644 TRANSLATION nonsense_mediated_decay - - 3 39.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000074867 Zfp808 ENSMUST00000223094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074867 Zfp808 ENSMUST00000222809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074867 Zfp808 ENSMUST00000221542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074867 Zfp808 ENSMUST00000221772 ENSMUSP00000152319 TRANSLATION protein_coding - - 5 136.0 0.0 1.6 0.0 80.1 0.0 -4,-5 0.0 - 3.69 MINOR ENSMUSG00000074867 Zfp808 ENSMUST00000222947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074867 Zfp808 ENSMUST00000221618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074867 Zfp808 ENSMUST00000099449 ENSMUSP00000097048 TRANSLATION protein_coding - CCDS36696.1 1 753.0 88.0 2.6 0.0 537.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078945 Naip2 ENSMUST00000167986 ENSMUSP00000125852 TRANSLATION protein_coding - - 5 1391.0 7.0 9.2 0.0 308.3 0.0 -4,-5 0.2424 10 16.002 MINOR ENSMUSG00000078945 Naip2 ENSMUST00000117913 ENSMUSP00000113890 TRANSLATION protein_coding - CCDS26726.1 1 1447.0 7.0 10.2 0.0 308.3 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000078945 Naip2 ENSMUST00000067975 ENSMUSP00000070827 TRANSLATION protein_coding - CCDS26726.1 1 1447.0 7.0 10.2 0.0 308.3 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000021728 Emb ENSMUST00000225460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021728 Emb ENSMUST00000022242 ENSMUSP00000022242 TRANSLATION protein_coding - CCDS26791.1 1 330.0 0.0 5.2 1.0 31.3 0.0 2,-1 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000021728 Emb ENSMUST00000225981 ENSMUSP00000153512 TRANSLATION protein_coding stop - - 101.0 2.0 1.35 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000021728 Emb ENSMUST00000225648 - NO_TRANSLATION retained_intron ENSMUSG00000021728 Emb ENSMUST00000224455 - NO_TRANSLATION retained_intron ENSMUSG00000021728 Emb ENSMUST00000224821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021486 Prelid1 ENSMUST00000021942 ENSMUSP00000021942 TRANSLATION protein_coding - CCDS26542.1 1 217.0 0.0 3.95 20.5 195.8 0.0 -4,-1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021486 Prelid1 ENSMUST00000224220 - NO_TRANSLATION retained_intron ENSMUSG00000025869 Nop16 ENSMUST00000026987 ENSMUSP00000026987 TRANSLATION protein_coding - CCDS26531.1 1 178.0 0.0 0.0 26.5 58.5 0.0 -4,-7 1.0 7 9.982 PRINCIPAL:1 ENSMUSG00000025869 Nop16 ENSMUST00000149462 ENSMUSP00000114954 TRANSLATION nonsense_mediated_decay - - 2 36.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025869 Nop16 ENSMUST00000148222 ENSMUSP00000122180 TRANSLATION protein_coding - - 5 181.0 0.0 0.0 0.0 58.7 0.0 -4,-7 0.1763 6 6.0 MINOR ENSMUSG00000069292 Vmn1r199 ENSMUST00000091732 ENSMUSP00000089326 TRANSLATION protein_coding - CCDS26317.1 - 367.0 0.0 0.0 0.0 110.4 5.0 -4,-7 0.3142 - 2.0 ALTERNATIVE:2 ENSMUSG00000069292 Vmn1r199 ENSMUST00000227689 ENSMUSP00000154112 TRANSLATION protein_coding - - - 324.0 0.0 0.0 0.3 110.4 5.0 0,-5 0.7482 - 2.0 PRINCIPAL:2 ENSMUSG00000069292 Vmn1r199 ENSMUST00000227846 ENSMUSP00000153996 TRANSLATION protein_coding - - - 324.0 0.0 0.0 0.3 110.4 5.0 0,-5 0.7482 - 2.0 PRINCIPAL:2 ENSMUSG00000069292 Vmn1r199 ENSMUST00000227685 ENSMUSP00000153918 TRANSLATION protein_coding - CCDS26317.1 - 367.0 0.0 0.0 0.0 110.4 5.0 -4,-7 0.3142 - 2.0 ALTERNATIVE:2 ENSMUSG00000099583 H3c4 ENSMUST00000105105 ENSMUSP00000100737 TRANSLATION protein_coding - CCDS26352.1 - 136.0 0.0 1.0 31.8 181.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021638 Ocln ENSMUST00000159515 ENSMUSP00000125595 TRANSLATION protein_coding stop - 5 107.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 1 -2.0 MINOR ENSMUSG00000021638 Ocln ENSMUST00000069756 ENSMUSP00000065284 TRANSLATION protein_coding - CCDS26731.1 1 521.0 0.0 2.5 8.7 186.4 4.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000021638 Ocln ENSMUST00000022140 ENSMUSP00000022140 TRANSLATION protein_coding - CCDS26731.1 1 521.0 0.0 2.5 8.7 186.4 4.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000021638 Ocln ENSMUST00000160859 ENSMUSP00000124849 TRANSLATION protein_coding - CCDS26731.1 1 521.0 0.0 2.5 8.7 186.4 4.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000021638 Ocln ENSMUST00000159459 ENSMUSP00000125642 TRANSLATION protein_coding - - 1 272.0 0.0 2.5 1.7 92.8 0.0 -1,-6 0.1136 6 6.657 MINOR ENSMUSG00000021364 Elovl2 ENSMUST00000021793 ENSMUSP00000021793 TRANSLATION protein_coding - CCDS36639.1 1 292.0 0.0 5.98 19.4 213.1 5.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000021364 Elovl2 ENSMUST00000117096 ENSMUSP00000114112 TRANSLATION protein_coding - CCDS79180.1 1 275.0 0.0 5.48 9.5 213.1 5.0 -4,-5 0.7319 1 12.846 MINOR ENSMUSG00000074768 Bhmt ENSMUST00000124193 - NO_TRANSLATION retained_intron ENSMUSG00000074768 Bhmt ENSMUST00000099309 ENSMUSP00000096912 TRANSLATION protein_coding - CCDS36748.1 1 407.0 0.0 7.066 22.3 170.6 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000006720 Zfp184 ENSMUST00000176003 - NO_TRANSLATION retained_intron ENSMUSG00000006720 Zfp184 ENSMUST00000176580 ENSMUSP00000135404 TRANSLATION nonsense_mediated_decay - - 1 84.0 0.0 1.0 0.0 81.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000006720 Zfp184 ENSMUST00000176511 ENSMUSP00000135173 TRANSLATION protein_coding - CCDS26302.1 1 737.0 75.0 2.33 0.1 479.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000006720 Zfp184 ENSMUST00000006903 ENSMUSP00000006903 TRANSLATION protein_coding - CCDS26302.1 5 737.0 75.0 2.33 0.1 479.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000006720 Zfp184 ENSMUST00000102978 ENSMUSP00000100043 TRANSLATION protein_coding - CCDS26302.1 5 737.0 75.0 2.33 0.1 479.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000006720 Zfp184 ENSMUST00000152258 ENSMUSP00000135102 TRANSLATION protein_coding stop - 5 99.0 0.0 1.93 0.0 82.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021763 Cspg4b ENSMUST00000136755 ENSMUSP00000119993 TRANSLATION protein_coding - - 5 2391.0 9.0 0.5 0.3 826.3 0.0 1,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000021763 Cspg4b ENSMUST00000135096 ENSMUSP00000131959 TRANSLATION protein_coding start - 1 158.0 0.0 0.0 0.0 37.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000114456 H2bc9 ENSMUST00000224359 ENSMUSP00000153277 TRANSLATION protein_coding - CCDS26343.1 - 126.0 0.0 1.0 12.5 89.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036123 Slc9a3 ENSMUST00000036208 ENSMUSP00000038142 TRANSLATION protein_coding - CCDS36731.1 2 829.0 0.0 7.35 0.4 284.7 10.0 4,-1 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000036123 Slc9a3 ENSMUST00000225423 ENSMUSP00000153255 TRANSLATION protein_coding - - - 862.0 0.0 7.35 0.1 284.7 10.0 4,-1 0.304 2 8.0 ALTERNATIVE:2 ENSMUSG00000036123 Slc9a3 ENSMUST00000221410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036123 Slc9a3 ENSMUST00000221703 ENSMUSP00000152682 TRANSLATION protein_coding - - 5 829.0 0.0 7.35 0.4 284.7 10.0 4,-1 0.6746 3 8.0 PRINCIPAL:2 ENSMUSG00000050423 Ppp1r3g ENSMUST00000172766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050423 Ppp1r3g ENSMUST00000225537 ENSMUSP00000153702 TRANSLATION protein_coding - CCDS49237.1 - 347.0 0.0 0.1 0.4 90.6 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000050423 Ppp1r3g ENSMUST00000132661 ENSMUSP00000122712 TRANSLATION protein_coding - CCDS49237.1 1 347.0 0.0 0.1 0.4 90.6 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000048264 Dip2c ENSMUST00000169960 ENSMUSP00000131238 TRANSLATION protein_coding - - 1 1527.0 0.0 8.749 0.0 403.0 0.0 -4,-5 0.0494 27 6.864 MINOR ENSMUSG00000048264 Dip2c ENSMUST00000166299 ENSMUSP00000126827 TRANSLATION protein_coding - - 5 1557.0 0.0 9.583 0.0 458.6 0.0 -4,-5 0.5145 26 11.868 MINOR ENSMUSG00000048264 Dip2c ENSMUST00000222280 ENSMUSP00000152159 TRANSLATION protein_coding start - 1 660.0 0.0 5.525 0.0 256.7 0.0 -4,-5 0.0005 6 -2.0 MINOR ENSMUSG00000048264 Dip2c ENSMUST00000174552 ENSMUSP00000133806 TRANSLATION protein_coding - CCDS36589.2 1 1556.0 0.0 9.649 24.5 457.0 0.0 -4,-5 1.0 27 15.904 PRINCIPAL:1 ENSMUSG00000021494 Ddx41 ENSMUST00000224765 ENSMUSP00000153348 TRANSLATION protein_coding - - - 633.0 13.0 10.625 0.0 254.0 0.0 -4,-5 0.0862 16 18.0 MINOR ENSMUSG00000021494 Ddx41 ENSMUST00000225783 - NO_TRANSLATION retained_intron ENSMUSG00000021494 Ddx41 ENSMUST00000224686 - NO_TRANSLATION retained_intron ENSMUSG00000021494 Ddx41 ENSMUST00000021956 ENSMUSP00000021956 TRANSLATION protein_coding - CCDS26549.1 1 622.0 13.0 10.625 17.3 254.0 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000021494 Ddx41 ENSMUST00000224125 - NO_TRANSLATION retained_intron ENSMUSG00000021468 Sptlc1 ENSMUST00000021920 ENSMUSP00000021920 TRANSLATION protein_coding - CCDS26521.1 1 473.0 3.0 13.5 14.3 142.4 0.0 -4,-7 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000021468 Sptlc1 ENSMUST00000221709 - NO_TRANSLATION retained_intron ENSMUSG00000021468 Sptlc1 ENSMUST00000221265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101578 Vmn1r206 ENSMUST00000187140 ENSMUSP00000139772 TRANSLATION protein_coding - CCDS26323.1 - 312.0 0.0 0.0 0.0 118.8 3.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000101578 Vmn1r206 ENSMUST00000227244 ENSMUSP00000154713 TRANSLATION protein_coding - CCDS26323.1 - 312.0 0.0 0.0 0.0 118.8 3.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000042167 Tent2 ENSMUST00000225868 ENSMUSP00000153703 TRANSLATION protein_coding - - - 480.0 14.0 9.125 11.0 54.4 0.0 -4,-2 0.8133 3 15.0 ALTERNATIVE:1 ENSMUSG00000042167 Tent2 ENSMUST00000226081 ENSMUSP00000153685 TRANSLATION protein_coding start - - 99.0 6.0 2.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000042167 Tent2 ENSMUST00000224545 ENSMUSP00000153339 TRANSLATION nonsense_mediated_decay - - - 158.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000042167 Tent2 ENSMUST00000224464 ENSMUSP00000153060 TRANSLATION protein_coding stop - - 155.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000042167 Tent2 ENSMUST00000223975 - NO_TRANSLATION retained_intron ENSMUSG00000042167 Tent2 ENSMUST00000048702 ENSMUSP00000048124 TRANSLATION protein_coding - CCDS26686.1 1 484.0 14.0 9.125 11.0 54.4 0.0 -4,-2 1.0 3 15.0 PRINCIPAL:4 ENSMUSG00000105830 Trgj2 ENSMUST00000197113 ENSMUSP00000143727 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000021414 Fam217a ENSMUST00000225242 ENSMUSP00000153128 TRANSLATION protein_coding - - - 419.0 0.0 0.0 0.0 173.6 0.0 -4,-6 0.0625 - 0.0 ALTERNATIVE:2 ENSMUSG00000021414 Fam217a ENSMUST00000021851 ENSMUSP00000021851 TRANSLATION protein_coding - CCDS56875.1 1 510.0 0.0 0.0 0.1 173.6 0.0 -4,-7 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000021414 Fam217a ENSMUST00000223834 ENSMUSP00000153297 TRANSLATION protein_coding - - - 662.0 0.0 0.0 0.0 173.6 0.0 -4,-2 0.1077 - 0.0 ALTERNATIVE:2 ENSMUSG00000021414 Fam217a ENSMUST00000224613 - NO_TRANSLATION retained_intron ENSMUSG00000047117 Ankdd1b ENSMUST00000181276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047117 Ankdd1b ENSMUST00000055607 ENSMUSP00000061643 TRANSLATION protein_coding - - 1 554.0 0.0 10.244 1.1 186.9 0.0 -4,-2 0.7611 - 13.0 PRINCIPAL:1 ENSMUSG00000047117 Ankdd1b ENSMUST00000181822 - NO_TRANSLATION retained_intron ENSMUSG00000047117 Ankdd1b ENSMUST00000181613 ENSMUSP00000159018 TRANSLATION protein_coding stop - 5 205.0 0.0 3.9 0.0 82.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000047117 Ankdd1b ENSMUST00000239026 ENSMUSP00000159079 TRANSLATION protein_coding - - - 521.0 0.0 9.244 0.0 173.4 0.0 -4,-2 0.0134 - 9.192 MINOR ENSMUSG00000047117 Ankdd1b ENSMUST00000181074 - NO_TRANSLATION retained_intron ENSMUSG00000047117 Ankdd1b ENSMUST00000181761 ENSMUSP00000158897 TRANSLATION protein_coding start - 1 97.0 0.0 1.804 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000047117 Ankdd1b ENSMUST00000238922 ENSMUSP00000158973 TRANSLATION nonsense_mediated_decay - - - 80.0 0.0 0.2 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000047117 Ankdd1b ENSMUST00000239137 ENSMUSP00000158881 TRANSLATION nonsense_mediated_decay - - - 70.0 0.0 0.2 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021671 Poc5 ENSMUST00000222640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021671 Poc5 ENSMUST00000223478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021671 Poc5 ENSMUST00000099295 ENSMUSP00000096898 TRANSLATION protein_coding - CCDS26703.1 1 558.0 0.0 4.0 0.4 0.0 0.0 -4,-5 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000021671 Poc5 ENSMUST00000222792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021671 Poc5 ENSMUST00000221039 - NO_TRANSLATION retained_intron ENSMUSG00000114487 Gm49393 ENSMUST00000225382 ENSMUSP00000153109 TRANSLATION nonsense_mediated_decay,RT start - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021707 Dhfr ENSMUST00000022218 ENSMUSP00000022218 TRANSLATION protein_coding - CCDS26680.1 1 187.0 35.0 5.0 26.4 0.0 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000021451 Sema4d ENSMUST00000139018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021451 Sema4d ENSMUST00000139858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021451 Sema4d ENSMUST00000146922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021451 Sema4d ENSMUST00000138228 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021451 Sema4d ENSMUST00000110039 ENSMUSP00000105666 TRANSLATION protein_coding - CCDS26514.1 1 861.0 0.0 12.05 4.0 565.4 0.0 4,-1 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000021451 Sema4d ENSMUST00000021900 ENSMUSP00000021900 TRANSLATION protein_coding - CCDS26514.1 1 861.0 0.0 12.05 4.0 565.4 0.0 4,-1 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000021451 Sema4d ENSMUST00000155896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021451 Sema4d ENSMUST00000110042 ENSMUSP00000105669 TRANSLATION protein_coding start - 5 185.0 0.0 0.33 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021451 Sema4d ENSMUST00000146238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021451 Sema4d ENSMUST00000150662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021451 Sema4d ENSMUST00000143396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021451 Sema4d ENSMUST00000110040 ENSMUSP00000105667 TRANSLATION protein_coding - CCDS26514.1 1 861.0 0.0 12.05 4.0 565.4 0.0 4,-1 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000021451 Sema4d ENSMUST00000139865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021451 Sema4d ENSMUST00000125511 - NO_TRANSLATION retained_intron ENSMUSG00000100622 Gm20379 ENSMUST00000188317 ENSMUSP00000140453 TRANSLATION protein_coding start - - 119.0 0.0 0.0 0.0 74.4 0.0 -4,-2 0.6926 - -2.0 PRINCIPAL:1 ENSMUSG00000039114 Nrn1 ENSMUST00000223611 ENSMUSP00000153395 TRANSLATION protein_coding - - - 94.0 0.0 1.5 0.0 93.2 0.0 -4,-5 0.0 - 7.122 MINOR ENSMUSG00000039114 Nrn1 ENSMUST00000224323 ENSMUSP00000153099 TRANSLATION protein_coding - - - 151.0 0.0 2.25 0.0 131.1 0.0 -4,-5 0.0033 2 11.094 MINOR ENSMUSG00000039114 Nrn1 ENSMUST00000224960 ENSMUSP00000153173 TRANSLATION protein_coding stop - - 140.0 0.0 2.65 20.3 131.1 0.0 3,-2 0.8291 2 -2.0 MINOR ENSMUSG00000039114 Nrn1 ENSMUST00000122286 ENSMUSP00000113721 TRANSLATION protein_coding - - 3 158.0 0.0 2.25 0.0 131.1 0.0 -4,-5 0.0029 2 11.094 MINOR ENSMUSG00000039114 Nrn1 ENSMUST00000037623 ENSMUSP00000040900 TRANSLATION protein_coding - CCDS26455.1 1 142.0 0.0 2.65 20.3 131.1 0.0 3,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000069309 H2ac22 ENSMUST00000091751 ENSMUSP00000089345 TRANSLATION protein_coding - CCDS26297.1 - 130.0 0.0 1.0 11.0 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035139 Secisbp2 ENSMUST00000110044 ENSMUSP00000105671 TRANSLATION protein_coding - - 2 414.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0032 9 0.0 MINOR ENSMUSG00000035139 Secisbp2 ENSMUST00000040117 ENSMUSP00000045740 TRANSLATION protein_coding - CCDS36665.1 1 858.0 0.0 0.0 1.0 73.6 0.0 -4,-5 1.0 17 6.0 PRINCIPAL:1 ENSMUSG00000035139 Secisbp2 ENSMUST00000146011 - NO_TRANSLATION retained_intron ENSMUSG00000035139 Secisbp2 ENSMUST00000154202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035139 Secisbp2 ENSMUST00000153877 - NO_TRANSLATION retained_intron ENSMUSG00000035139 Secisbp2 ENSMUST00000127360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045827 Serpinb9 ENSMUST00000063191 ENSMUSP00000099002 TRANSLATION protein_coding - CCDS26431.1 5 374.0 0.0 5.6 12.5 428.2 0.0 -4,-7 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000045827 Serpinb9 ENSMUST00000006391 ENSMUSP00000006391 TRANSLATION protein_coding - CCDS26431.1 1 374.0 0.0 5.6 12.5 428.2 0.0 -4,-7 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000021670 Hmgcr ENSMUST00000022176 ENSMUSP00000022176 TRANSLATION protein_coding - CCDS26706.1 1 887.0 18.0 11.937 15.8 554.2 9.0 -3,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000021670 Hmgcr ENSMUST00000169945 ENSMUSP00000128642 TRANSLATION protein_coding start - 5 165.0 3.0 3.66 0.0 118.1 1.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021670 Hmgcr ENSMUST00000169202 ENSMUSP00000132155 TRANSLATION protein_coding start/stop - 5 218.0 11.0 5.33 0.0 212.1 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000021670 Hmgcr ENSMUST00000168374 - NO_TRANSLATION retained_intron ENSMUSG00000021670 Hmgcr ENSMUST00000170287 ENSMUSP00000128939 TRANSLATION protein_coding - - 1 819.0 16.0 10.937 0.0 484.8 8.0 -3,-7 0.0164 7 10.506 MINOR ENSMUSG00000021670 Hmgcr ENSMUST00000168855 ENSMUSP00000126087 TRANSLATION nonsense_mediated_decay - - 5 52.0 0.0 0.0 0.0 0.0 2.0 -3,-7 0.0005 - -2.0 MINOR ENSMUSG00000021670 Hmgcr ENSMUST00000171537 ENSMUSP00000126959 TRANSLATION protein_coding stop - 3 100.0 0.0 0.48 0.0 0.0 4.0 -4,-7 0.0023 - -2.0 MINOR ENSMUSG00000021670 Hmgcr ENSMUST00000169966 ENSMUSP00000128294 TRANSLATION protein_coding stop - 3 91.0 0.0 0.48 0.0 0.0 4.0 -3,-6 0.0023 - -2.0 MINOR ENSMUSG00000021670 Hmgcr ENSMUST00000169196 ENSMUSP00000132749 TRANSLATION protein_coding stop - 3 210.0 0.0 1.505 0.0 50.0 7.0 -3,-7 0.0022 1 -2.0 MINOR ENSMUSG00000021670 Hmgcr ENSMUST00000163201 - NO_TRANSLATION retained_intron ENSMUSG00000021670 Hmgcr ENSMUST00000172440 - NO_TRANSLATION retained_intron ENSMUSG00000021709 Erbin ENSMUST00000189323 - NO_TRANSLATION retained_intron ENSMUSG00000021709 Erbin ENSMUST00000053927 ENSMUSP00000057956 TRANSLATION protein_coding - - 5 1376.0 0.0 12.25 1.4 179.3 0.0 -4,-2 0.4214 31 8.25 ALTERNATIVE:2 ENSMUSG00000021709 Erbin ENSMUST00000169083 ENSMUSP00000127607 TRANSLATION protein_coding - CCDS79234.1 1 1411.0 0.0 12.25 0.1 179.3 0.0 -4,-2 0.5036 31 8.0 ALTERNATIVE:2 ENSMUSG00000021709 Erbin ENSMUST00000091269 ENSMUSP00000088813 TRANSLATION protein_coding - CCDS79233.1 1 1402.0 0.0 12.25 0.4 179.3 0.0 -4,-2 0.561 31 8.0 ALTERNATIVE:2 ENSMUSG00000021709 Erbin ENSMUST00000191275 ENSMUSP00000140536 TRANSLATION protein_coding - CCDS26744.1 1 1450.0 0.0 12.25 0.4 179.3 0.0 -4,-2 0.5814 32 8.0 ALTERNATIVE:2 ENSMUSG00000021709 Erbin ENSMUST00000188997 ENSMUSP00000140931 TRANSLATION protein_coding - CCDS79232.1 1 1294.0 0.0 12.05 2.6 179.3 0.0 -4,-2 1.0 29 8.598 PRINCIPAL:2 ENSMUSG00000021709 Erbin ENSMUST00000022222 ENSMUSP00000022222 TRANSLATION protein_coding - - 5 1376.0 0.0 12.25 1.4 179.3 0.0 -4,-2 0.4214 31 8.25 ALTERNATIVE:2 ENSMUSG00000041324 Inhba ENSMUST00000042603 ENSMUSP00000047894 TRANSLATION protein_coding - CCDS26251.1 1 424.0 0.0 1.6 17.9 142.0 0.0 3,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000041324 Inhba ENSMUST00000164993 ENSMUSP00000132085 TRANSLATION protein_coding - CCDS26251.1 1 424.0 0.0 1.6 17.9 142.0 0.0 3,-2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000005312 Ubqln1 ENSMUST00000225818 - NO_TRANSLATION retained_intron ENSMUSG00000005312 Ubqln1 ENSMUST00000058735 ENSMUSP00000050191 TRANSLATION protein_coding - CCDS49281.1 1 582.0 0.0 3.0 2.4 98.8 0.0 -4,-5 0.8125 10 9.0 PRINCIPAL:3 ENSMUSG00000005312 Ubqln1 ENSMUST00000076454 ENSMUSP00000075782 TRANSLATION protein_coding - CCDS26569.1 1 554.0 0.0 3.0 2.4 98.8 0.0 -4,-5 1.0 9 9.0 ALTERNATIVE:2 ENSMUSG00000005312 Ubqln1 ENSMUST00000225645 ENSMUSP00000153666 TRANSLATION protein_coding start - - 190.0 0.0 1.0 0.0 32.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021346 Prl8a8 ENSMUST00000223621 ENSMUSP00000153520 TRANSLATION protein_coding stop - - 217.0 0.0 3.3 0.0 115.0 0.0 -4,-7 0.0006 - -2.0 MINOR ENSMUSG00000021346 Prl8a8 ENSMUST00000110350 ENSMUSP00000105979 TRANSLATION protein_coding - CCDS79173.1 1 241.0 0.0 4.3 0.4 183.1 0.0 2,-2 0.6712 - 8.0 ALTERNATIVE:2 ENSMUSG00000021346 Prl8a8 ENSMUST00000018389 ENSMUSP00000018389 TRANSLATION protein_coding - CCDS26399.1 1 240.0 0.0 4.3 0.4 183.1 0.0 3,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000021346 Prl8a8 ENSMUST00000224072 ENSMUSP00000153131 TRANSLATION protein_coding - - - 278.0 0.0 4.3 0.0 183.1 0.0 -4,-7 0.0323 - 8.0 ALTERNATIVE:2 ENSMUSG00000064138 Fam172a ENSMUST00000225709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064138 Fam172a ENSMUST00000224013 - NO_TRANSLATION retained_intron ENSMUSG00000064138 Fam172a ENSMUST00000225623 ENSMUSP00000153070 TRANSLATION protein_coding stop - - 181.0 0.0 1.546 0.0 0.0 0.0 -4,-6 0.0047 1 -2.0 MINOR ENSMUSG00000064138 Fam172a ENSMUST00000224888 - NO_TRANSLATION retained_intron ENSMUSG00000064138 Fam172a ENSMUST00000224908 ENSMUSP00000153065 TRANSLATION protein_coding stop - - 141.0 0.0 1.396 0.0 0.0 0.0 -4,-5 0.0024 - -2.0 MINOR ENSMUSG00000064138 Fam172a ENSMUST00000224889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064138 Fam172a ENSMUST00000091459 ENSMUSP00000089038 TRANSLATION protein_coding - CCDS49318.1 1 371.0 0.0 3.816 10.2 0.0 0.0 -4,-5 0.8941 4 8.4 ALTERNATIVE:1 ENSMUSG00000064138 Fam172a ENSMUST00000163257 ENSMUSP00000133140 TRANSLATION protein_coding - CCDS49317.1 5 417.0 0.0 3.816 12.5 0.0 0.0 0,-3 1.0 4 9.0 PRINCIPAL:4 ENSMUSG00000064138 Fam172a ENSMUST00000224217 ENSMUSP00000153656 TRANSLATION nonsense_mediated_decay - - - 62.0 0.0 0.26 0.0 0.0 0.0 -4,-5 0.0047 1 -2.0 MINOR ENSMUSG00000064138 Fam172a ENSMUST00000099358 ENSMUSP00000096960 TRANSLATION protein_coding - CCDS49319.1 1 307.0 0.0 2.816 3.9 0.0 0.0 -4,-5 0.2172 3 4.758 MINOR ENSMUSG00000021619 Atg10 ENSMUST00000022119 ENSMUSP00000022119 TRANSLATION protein_coding - CCDS26675.1 1 211.0 0.0 1.18 8.1 67.6 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000021619 Atg10 ENSMUST00000223729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021619 Atg10 ENSMUST00000224449 ENSMUSP00000153331 TRANSLATION nonsense_mediated_decay - - - 71.0 0.0 0.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000016477 E2f3 ENSMUST00000222730 ENSMUSP00000152368 TRANSLATION protein_coding - - 1 334.0 0.0 3.2 16.2 206.0 0.0 -4,-5 0.942 - 12.0 ALTERNATIVE:1 ENSMUSG00000016477 E2f3 ENSMUST00000221536 ENSMUSP00000152782 TRANSLATION protein_coding - - 1 340.0 0.0 3.2 16.2 206.0 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000016477 E2f3 ENSMUST00000146092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016477 E2f3 ENSMUST00000102948 ENSMUSP00000100012 TRANSLATION protein_coding - CCDS26413.1 1 457.0 0.0 3.2 8.2 206.0 0.0 -4,-5 0.8657 - 9.896 MINOR ENSMUSG00000059839 Zfp874b ENSMUST00000224308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059839 Zfp874b ENSMUST00000225027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059839 Zfp874b ENSMUST00000223868 ENSMUSP00000153242 TRANSLATION protein_coding stop - - 176.0 6.0 2.6 0.0 90.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000059839 Zfp874b ENSMUST00000223711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059839 Zfp874b ENSMUST00000019572 ENSMUSP00000019572 TRANSLATION protein_coding - CCDS49302.1 3 447.0 43.0 3.6 0.1 265.2 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000043986 Spata31d1d ENSMUST00000052978 ENSMUSP00000128200 TRANSLATION protein_coding - CCDS49286.1 2 1247.0 0.0 0.0 0.0 385.0 0.0 -4,-6 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000006611 Hfe ENSMUST00000151243 ENSMUSP00000116569 TRANSLATION protein_coding start - 1 35.0 0.0 0.6 0.0 0.0 0.0 2,-3 0.0 - -2.0 MINOR ENSMUSG00000006611 Hfe ENSMUST00000006787 ENSMUSP00000006787 TRANSLATION protein_coding - - 5 171.0 0.0 2.6 0.1 52.1 2.0 2,-2 0.0028 1 1.998 MINOR ENSMUSG00000006611 Hfe ENSMUST00000091706 ENSMUSP00000089298 TRANSLATION protein_coding - CCDS26360.1 1 359.0 0.0 4.6 0.1 201.0 2.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000006611 Hfe ENSMUST00000091707 ENSMUSP00000089299 TRANSLATION protein_coding - CCDS84012.1 5 271.0 0.0 3.6 0.0 132.7 2.0 2,-2 0.0339 3 5.904 MINOR ENSMUSG00000021687 Scamp1 ENSMUST00000153558 ENSMUSP00000120053 TRANSLATION protein_coding - CCDS84049.1 1 286.0 0.0 6.33 3.1 249.4 7.0 -4,-5 0.3729 7 12.3 MINOR ENSMUSG00000021687 Scamp1 ENSMUST00000152555 ENSMUSP00000123135 TRANSLATION protein_coding - CCDS84049.1 1 286.0 0.0 6.33 3.1 249.4 7.0 -4,-5 0.3729 7 12.3 MINOR ENSMUSG00000021687 Scamp1 ENSMUST00000022197 ENSMUSP00000022197 TRANSLATION protein_coding - CCDS36750.1 1 338.0 0.0 6.33 28.9 249.4 7.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000021687 Scamp1 ENSMUST00000138255 ENSMUSP00000121039 TRANSLATION protein_coding stop - 5 116.0 0.0 2.33 0.0 75.1 1.0 -4,-5 0.0015 5 -2.0 MINOR ENSMUSG00000021643 Serf1 ENSMUST00000022145 ENSMUSP00000022145 TRANSLATION protein_coding - CCDS36765.1 1 62.0 0.0 1.239 18.5 46.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021643 Serf1 ENSMUST00000152286 ENSMUSP00000119193 TRANSLATION protein_coding - - 3 48.0 0.0 0.975 0.0 0.0 0.0 -4,-5 0.0 - 4.722 MINOR ENSMUSG00000021643 Serf1 ENSMUST00000151821 ENSMUSP00000119853 TRANSLATION protein_coding - - 2 48.0 0.0 0.975 0.0 0.0 0.0 -4,-5 0.0 - 4.722 MINOR ENSMUSG00000021643 Serf1 ENSMUST00000132053 ENSMUSP00000121609 TRANSLATION protein_coding - - 1 39.0 0.0 0.864 0.0 46.5 0.0 -4,-5 0.1048 - 10.182 MINOR ENSMUSG00000021643 Serf1 ENSMUST00000129014 ENSMUSP00000121421 TRANSLATION protein_coding - CCDS36765.1 3 62.0 0.0 1.239 18.5 46.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000051335 Gfod1 ENSMUST00000055341 ENSMUSP00000062662 TRANSLATION protein_coding - CCDS26477.1 1 390.0 0.0 3.0 36.9 42.0 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000051335 Gfod1 ENSMUST00000222779 ENSMUSP00000152216 TRANSLATION protein_coding start - 1 70.0 0.0 1.0 0.0 24.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021732 Fgf10 ENSMUST00000022246 ENSMUSP00000022246 TRANSLATION protein_coding - CCDS26795.1 1 209.0 0.0 2.6 12.7 163.8 0.0 1,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021732 Fgf10 ENSMUST00000128103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021732 Fgf10 ENSMUST00000146674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074715 Ccl28 ENSMUST00000099241 ENSMUSP00000096847 TRANSLATION protein_coding - CCDS56900.1 1 130.0 0.0 1.8 0.4 33.2 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074715 Ccl28 ENSMUST00000225880 - NO_TRANSLATION retained_intron ENSMUSG00000048924 Ccdc125 ENSMUST00000057325 ENSMUSP00000058484 TRANSLATION protein_coding - CCDS26736.1 1 500.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.8918 2 0.0 PRINCIPAL:2 ENSMUSG00000048924 Ccdc125 ENSMUST00000170347 ENSMUSP00000130107 TRANSLATION protein_coding - CCDS49346.1 1 330.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.2191 2 0.0 ALTERNATIVE:2 ENSMUSG00000021758 Ddx4 ENSMUST00000075748 ENSMUSP00000075157 TRANSLATION protein_coding - CCDS26774.1 1 702.0 18.0 8.8 1.8 270.9 0.0 -4,-5 0.4144 14 18.276 MINOR ENSMUSG00000021758 Ddx4 ENSMUST00000099166 ENSMUSP00000096769 TRANSLATION protein_coding - CCDS49366.1 1 728.0 18.0 8.8 9.7 270.9 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000021541 Trpc7 ENSMUST00000151918 ENSMUSP00000119809 TRANSLATION nonsense_mediated_decay - - 1 451.0 0.0 3.0 0.0 120.8 1.0 -4,-2 0.0016 - -2.0 MINOR ENSMUSG00000021541 Trpc7 ENSMUST00000173466 ENSMUSP00000134285 TRANSLATION nonsense_mediated_decay start - 5 380.0 0.0 3.0 0.0 120.8 1.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000021541 Trpc7 ENSMUST00000173817 ENSMUSP00000133411 TRANSLATION protein_coding - - 5 801.0 0.0 8.46 2.2 233.6 9.0 -4,-2 0.2462 - 6.354 MINOR ENSMUSG00000021541 Trpc7 ENSMUST00000174457 ENSMUSP00000133305 TRANSLATION protein_coding - - 5 807.0 0.0 8.46 2.7 233.6 8.0 -4,-2 0.249 - 6.502 MINOR ENSMUSG00000021541 Trpc7 ENSMUST00000173513 ENSMUSP00000134662 TRANSLATION protein_coding start - 5 746.0 0.0 7.46 3.9 233.6 8.0 -4,-7 0.4738 - -2.0 MINOR ENSMUSG00000021541 Trpc7 ENSMUST00000022023 ENSMUSP00000022023 TRANSLATION protein_coding - CCDS26566.1 1 862.0 0.0 9.46 7.8 233.6 9.0 -4,-2 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000021541 Trpc7 ENSMUST00000109871 ENSMUSP00000105497 TRANSLATION protein_coding - CCDS79192.1 1 861.0 0.0 9.085 7.8 233.6 9.0 -4,-2 0.9813 - 9.25 ALTERNATIVE:1 ENSMUSG00000021541 Trpc7 ENSMUST00000173067 ENSMUSP00000134481 TRANSLATION nonsense_mediated_decay start - 5 261.0 0.0 1.0 0.0 120.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000019756 Prl8a1 ENSMUST00000006664 ENSMUSP00000006664 TRANSLATION protein_coding - CCDS26401.1 1 240.0 0.0 4.3 0.4 194.7 0.0 1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000019756 Prl8a1 ENSMUST00000095926 ENSMUSP00000093616 TRANSLATION protein_coding - - 1 209.0 0.0 3.7 0.0 135.4 0.0 1,-4 0.0043 - 7.242 MINOR ENSMUSG00000001707 Eef1e1 ENSMUST00000001757 ENSMUSP00000001757 TRANSLATION protein_coding - CCDS26465.1 1 174.0 0.0 3.75 22.9 29.2 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000001707 Eef1e1 ENSMUST00000224487 - NO_TRANSLATION retained_intron ENSMUSG00000001707 Eef1e1 ENSMUST00000223823 - NO_TRANSLATION retained_intron ENSMUSG00000021662 Arhgef28 ENSMUST00000225663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021662 Arhgef28 ENSMUST00000238746 ENSMUSP00000158740 TRANSLATION protein_coding - - - 1387.0 9.0 6.75 2.2 140.9 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:2 ENSMUSG00000021662 Arhgef28 ENSMUST00000223849 ENSMUSP00000153000 TRANSLATION protein_coding stop - - 643.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0045 1 -2.0 MINOR ENSMUSG00000021662 Arhgef28 ENSMUST00000225269 - NO_TRANSLATION retained_intron ENSMUSG00000021662 Arhgef28 ENSMUST00000225884 ENSMUSP00000153423 TRANSLATION nonsense_mediated_decay - - - 1324.0 9.0 6.75 0.0 140.9 0.0 -4,-5 0.312 7 -2.0 MINOR ENSMUSG00000021662 Arhgef28 ENSMUST00000109426 ENSMUSP00000105053 TRANSLATION protein_coding - CCDS36758.1 1 1700.0 9.0 6.75 0.1 140.9 0.0 -4,-5 0.5882 10 14.0 ALTERNATIVE:2 ENSMUSG00000021662 Arhgef28 ENSMUST00000224866 ENSMUSP00000153114 TRANSLATION protein_coding stop - - 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0285 - -2.0 MINOR ENSMUSG00000021345 Prl8a6 ENSMUST00000080762 ENSMUSP00000079584 TRANSLATION protein_coding - CCDS70441.1 1 205.0 0.0 3.1 0.1 168.8 0.0 2,-2 0.0298 - 4.002 MINOR ENSMUSG00000021345 Prl8a6 ENSMUST00000018392 ENSMUSP00000018392 TRANSLATION protein_coding - CCDS26398.1 1 239.0 0.0 4.1 0.4 191.2 0.0 3,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000021345 Prl8a6 ENSMUST00000110355 ENSMUSP00000105984 TRANSLATION protein_coding - CCDS70442.1 1 240.0 0.0 4.1 0.4 191.2 0.0 2,-2 0.6664 - 8.0 ALTERNATIVE:2 ENSMUSG00000021536 Adcy2 ENSMUST00000022013 ENSMUSP00000022013 TRANSLATION protein_coding - CCDS36721.1 1 1095.0 7.0 8.94 6.3 639.8 0.0 -4,-1 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000045508 Or2b28 ENSMUST00000059216 ENSMUSP00000055870 TRANSLATION protein_coding - CCDS26272.1 - 316.0 0.0 1.0 6.6 182.9 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043190 Rfesd ENSMUST00000179078 ENSMUSP00000136314 TRANSLATION protein_coding - CCDS26654.1 1 157.0 10.0 2.33 10.3 40.0 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000043190 Rfesd ENSMUST00000224093 - NO_TRANSLATION retained_intron ENSMUSG00000043190 Rfesd ENSMUST00000167271 ENSMUSP00000130366 TRANSLATION protein_coding - CCDS26654.1 2 157.0 10.0 2.33 10.3 40.0 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000043190 Rfesd ENSMUST00000050997 ENSMUSP00000055763 TRANSLATION protein_coding - CCDS26654.1 1 157.0 10.0 2.33 10.3 40.0 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000021147 Wdr37 ENSMUST00000175958 ENSMUSP00000135182 TRANSLATION protein_coding stop - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000021147 Wdr37 ENSMUST00000054251 ENSMUSP00000062174 TRANSLATION protein_coding - CCDS26232.1 5 496.0 0.0 6.804 33.2 104.7 0.0 -4,-7 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000021147 Wdr37 ENSMUST00000176429 ENSMUSP00000134916 TRANSLATION protein_coding start/stop - 5 193.0 0.0 3.91 0.0 71.8 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000021147 Wdr37 ENSMUST00000176922 ENSMUSP00000135742 TRANSLATION protein_coding - CCDS49204.1 1 170.0 0.0 0.864 0.0 0.0 0.0 -4,-7 0.0218 2 0.0 MINOR ENSMUSG00000021147 Wdr37 ENSMUST00000021572 ENSMUSP00000021572 TRANSLATION protein_coding - CCDS26232.1 1 496.0 0.0 6.804 33.2 104.7 0.0 -4,-7 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000021147 Wdr37 ENSMUST00000177409 - NO_TRANSLATION retained_intron ENSMUSG00000021147 Wdr37 ENSMUST00000177404 ENSMUSP00000135785 TRANSLATION protein_coding stop - 3 30.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021147 Wdr37 ENSMUST00000164183 ENSMUSP00000131469 TRANSLATION protein_coding - CCDS49204.1 1 170.0 0.0 0.864 0.0 0.0 0.0 -4,-7 0.0218 2 0.0 MINOR ENSMUSG00000021147 Wdr37 ENSMUST00000176715 ENSMUSP00000134987 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000021147 Wdr37 ENSMUST00000177112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021147 Wdr37 ENSMUST00000175687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021147 Wdr37 ENSMUST00000176098 ENSMUSP00000135094 TRANSLATION nonsense_mediated_decay start - 5 78.0 0.0 2.258 0.0 31.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021147 Wdr37 ENSMUST00000177537 ENSMUSP00000135577 TRANSLATION nonsense_mediated_decay start - 5 66.0 0.0 1.428 0.0 26.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021147 Wdr37 ENSMUST00000176329 ENSMUSP00000135101 TRANSLATION protein_coding stop - 5 185.0 0.0 3.424 0.0 49.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021147 Wdr37 ENSMUST00000176587 ENSMUSP00000135271 TRANSLATION protein_coding start - 3 133.0 0.0 0.864 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000021147 Wdr37 ENSMUST00000221401 - NO_TRANSLATION retained_intron ENSMUSG00000021147 Wdr37 ENSMUST00000176813 ENSMUSP00000135097 TRANSLATION protein_coding stop - 5 179.0 0.0 1.594 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000050295 Foxc1 ENSMUST00000062292 ENSMUSP00000052196 TRANSLATION protein_coding - CCDS26425.1 - 553.0 0.0 0.2 0.4 137.8 0.0 -4,-7 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000094777 H2ac24 ENSMUST00000081342 ENSMUSP00000080088 TRANSLATION protein_coding - CCDS26301.1 - 130.0 0.0 1.0 11.0 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021196 Pfkp ENSMUST00000133041 ENSMUSP00000123662 TRANSLATION nonsense_mediated_decay start - 5 82.0 4.0 1.66 0.0 59.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021196 Pfkp ENSMUST00000135761 - NO_TRANSLATION retained_intron ENSMUSG00000021196 Pfkp ENSMUST00000144053 - NO_TRANSLATION retained_intron ENSMUSG00000021196 Pfkp ENSMUST00000131648 - NO_TRANSLATION retained_intron ENSMUSG00000021196 Pfkp ENSMUST00000148999 - NO_TRANSLATION retained_intron ENSMUSG00000021196 Pfkp ENSMUST00000136585 ENSMUSP00000115313 TRANSLATION protein_coding stop - 3 167.0 20.0 3.5 0.0 180.2 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000021196 Pfkp ENSMUST00000151894 - NO_TRANSLATION retained_intron ENSMUSG00000021196 Pfkp ENSMUST00000021614 ENSMUSP00000021614 TRANSLATION protein_coding - CCDS70427.1 1 784.0 42.0 20.16 0.0 691.8 0.0 -4,-5 1.0 27 12.674 MINOR ENSMUSG00000021196 Pfkp ENSMUST00000142972 ENSMUSP00000114439 TRANSLATION protein_coding start/stop - 3 183.0 5.0 3.75 0.0 0.0 0.0 -4,-5 0.0002 7 -2.0 MINOR ENSMUSG00000021196 Pfkp ENSMUST00000142372 - NO_TRANSLATION retained_intron ENSMUSG00000021196 Pfkp ENSMUST00000138703 ENSMUSP00000117030 TRANSLATION protein_coding - CCDS26230.1 1 784.0 43.0 20.49 0.0 687.8 0.0 -4,-5 0.8894 27 14.0 PRINCIPAL:1 ENSMUSG00000021196 Pfkp ENSMUST00000154100 ENSMUSP00000116523 TRANSLATION nonsense_mediated_decay start - 5 8.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0371 - -2.0 MINOR ENSMUSG00000021196 Pfkp ENSMUST00000137327 - NO_TRANSLATION retained_intron ENSMUSG00000100296 Vmn1r205 ENSMUST00000185475 ENSMUSP00000139977 TRANSLATION protein_coding - CCDS26322.1 - 316.0 0.0 0.0 0.0 119.1 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095653 Gm21818 ENSMUST00000225144 ENSMUSP00000153413 TRANSLATION protein_coding - - - 170.0 0.0 0.0 0.0 305.9 0.0 -4,-5 0.7527 - 6.0 PRINCIPAL:1 ENSMUSG00000021347 Prl7b1 ENSMUST00000080595 ENSMUSP00000079431 TRANSLATION protein_coding - CCDS26402.1 1 251.0 0.0 4.3 0.1 196.1 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021366 Hivep1 ENSMUST00000222854 ENSMUSP00000152442 TRANSLATION protein_coding start/stop - 3 241.0 4.0 1.75 0.0 21.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021366 Hivep1 ENSMUST00000220801 ENSMUSP00000152185 TRANSLATION nonsense_mediated_decay start - 3 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021366 Hivep1 ENSMUST00000220525 ENSMUSP00000152436 TRANSLATION protein_coding stop - 3 115.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021366 Hivep1 ENSMUST00000060148 ENSMUSP00000056147 TRANSLATION protein_coding - CCDS36643.1 5 2688.0 15.0 2.75 0.0 79.7 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000021366 Hivep1 ENSMUST00000222491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060081 H2ac1 ENSMUST00000072391 ENSMUSP00000072227 TRANSLATION protein_coding - CCDS26374.1 - 129.0 0.0 1.0 22.7 140.1 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000041995 Zbed3 ENSMUST00000221807 ENSMUSP00000152153 TRANSLATION protein_coding - CCDS26696.1 1 228.0 4.0 0.4 0.0 0.0 0.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000041995 Zbed3 ENSMUST00000222456 ENSMUSP00000152059 TRANSLATION protein_coding stop - 2 152.0 4.0 0.4 0.0 0.0 0.0 -4,-5 0.0655 3 -2.0 MINOR ENSMUSG00000041995 Zbed3 ENSMUST00000045909 ENSMUSP00000044774 TRANSLATION protein_coding - CCDS26696.1 1 228.0 4.0 0.4 0.0 0.0 0.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000094027 Gm21762 ENSMUST00000177561 ENSMUSP00000136809 TRANSLATION protein_coding - - - 151.0 0.0 0.0 0.0 264.8 0.0 -4,-5 0.7445 - 6.0 PRINCIPAL:1 ENSMUSG00000094027 Gm21762 ENSMUST00000225881 ENSMUSP00000153466 TRANSLATION protein_coding - - - 151.0 0.0 0.0 0.0 264.8 0.0 -4,-5 0.7445 - 6.0 PRINCIPAL:1 ENSMUSG00000098692 Gm28041 ENSMUST00000166080 ENSMUSP00000126669 TRANSLATION nonsense_mediated_decay,RT - - 1 114.0 0.0 1.8 0.0 79.1 0.0 -4,-7 0.7476 - -2.0 PRINCIPAL:1 ENSMUSG00000021314 Amph ENSMUST00000200466 ENSMUSP00000142766 TRANSLATION protein_coding - CCDS79165.1 1 690.0 0.0 8.75 3.9 220.1 0.0 -4,-6 1.0 16 9.0 PRINCIPAL:2 ENSMUSG00000021314 Amph ENSMUST00000239207 ENSMUSP00000159202 TRANSLATION protein_coding - - - 820.0 0.0 8.75 0.0 220.1 0.0 -4,-6 0.0588 17 8.0 ALTERNATIVE:2 ENSMUSG00000021314 Amph ENSMUST00000200273 - NO_TRANSLATION retained_intron ENSMUSG00000021314 Amph ENSMUST00000197545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021314 Amph ENSMUST00000222698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021314 Amph ENSMUST00000003345 ENSMUSP00000003345 TRANSLATION protein_coding - CCDS26258.1 1 686.0 0.0 8.75 0.4 220.1 0.0 -4,-6 0.3987 16 8.0 ALTERNATIVE:2 ENSMUSG00000021719 Rgs7bp ENSMUST00000063551 ENSMUSP00000066614 TRANSLATION protein_coding - CCDS36774.1 1 257.0 0.0 0.0 32.7 0.0 0.0 -4,-7 1.0 4 4.0 PRINCIPAL:1 ENSMUSG00000071551 Akr1c19 ENSMUST00000118663 ENSMUSP00000112666 TRANSLATION protein_coding - CCDS26221.1 5 323.0 48.0 7.75 8.8 214.2 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000071551 Akr1c19 ENSMUST00000129751 ENSMUSP00000152741 TRANSLATION protein_coding start - 3 61.0 1.0 1.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000071551 Akr1c19 ENSMUST00000081326 ENSMUSP00000080074 TRANSLATION protein_coding - CCDS26221.1 1 323.0 48.0 7.75 8.8 214.2 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000021379 Id4 ENSMUST00000021810 ENSMUSP00000021810 TRANSLATION protein_coding - CCDS26492.1 1 161.0 0.0 0.8 9.1 49.8 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000021423 Ly86 ENSMUST00000021860 ENSMUSP00000021860 TRANSLATION protein_coding - CCDS26457.1 1 162.0 0.0 3.8 9.7 23.4 0.0 2,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021423 Ly86 ENSMUST00000225716 - NO_TRANSLATION retained_intron ENSMUSG00000021661 Ankra2 ENSMUST00000150916 ENSMUSP00000116590 TRANSLATION protein_coding - - 1 154.0 0.0 4.03 0.0 81.5 0.0 -4,-5 0.0042 - 10.218 MINOR ENSMUSG00000021661 Ankra2 ENSMUST00000223606 - NO_TRANSLATION retained_intron ENSMUSG00000021661 Ankra2 ENSMUST00000022164 ENSMUSP00000022164 TRANSLATION protein_coding - CCDS26713.1 1 312.0 0.0 4.91 22.0 81.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021661 Ankra2 ENSMUST00000150352 ENSMUSP00000117508 TRANSLATION protein_coding - CCDS70492.1 1 309.0 0.0 4.66 0.0 81.7 0.0 -4,-5 0.1772 - 11.496 MINOR ENSMUSG00000021661 Ankra2 ENSMUST00000091356 ENSMUSP00000088915 TRANSLATION protein_coding - CCDS70494.1 1 144.0 0.0 4.028 0.0 81.5 0.0 -4,-5 0.0342 - 10.212 MINOR ENSMUSG00000021661 Ankra2 ENSMUST00000226100 ENSMUSP00000153417 TRANSLATION protein_coding - - - 152.0 0.0 4.33 3.6 81.5 0.0 -4,-5 0.1036 - 11.314 MINOR ENSMUSG00000021661 Ankra2 ENSMUST00000155629 - NO_TRANSLATION retained_intron ENSMUSG00000021661 Ankra2 ENSMUST00000123924 ENSMUSP00000122701 TRANSLATION protein_coding - CCDS70493.1 1 304.0 0.0 4.608 1.2 81.8 0.0 -4,-5 0.2498 - 11.434 MINOR ENSMUSG00000114432 Gm49391 ENSMUST00000225802 ENSMUSP00000153043 TRANSLATION nonsense_mediated_decay,RT start - - 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000114432 Gm49391 ENSMUST00000225859 ENSMUSP00000153232 TRANSLATION protein_coding,RT - - - 136.0 0.0 2.25 0.0 54.8 0.0 2,-2 0.5114 - -2.0 ALTERNATIVE:2 ENSMUSG00000114432 Gm49391 ENSMUST00000225167 ENSMUSP00000153401 TRANSLATION protein_coding,RT - - - 136.0 0.0 2.5 0.0 55.3 0.0 2,-2 0.8103 - -2.0 PRINCIPAL:5 ENSMUSG00000069089 Cdk7 ENSMUST00000091299 ENSMUSP00000088845 TRANSLATION protein_coding - CCDS36766.1 1 346.0 18.0 9.05 30.0 249.4 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000069089 Cdk7 ENSMUST00000225990 ENSMUSP00000153369 TRANSLATION protein_coding - - - 309.0 17.0 8.05 3.1 190.8 0.0 -4,-5 0.0449 5 12.108 MINOR ENSMUSG00000069089 Cdk7 ENSMUST00000225056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069089 Cdk7 ENSMUST00000225578 - NO_TRANSLATION retained_intron ENSMUSG00000069089 Cdk7 ENSMUST00000225946 - NO_TRANSLATION retained_intron ENSMUSG00000061022 Vmn1r222 ENSMUST00000235574 ENSMUSP00000157499 TRANSLATION protein_coding - CCDS26336.1 - 308.0 0.0 0.0 0.7 129.5 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061022 Vmn1r222 ENSMUST00000077116 ENSMUSP00000076365 TRANSLATION protein_coding - CCDS26336.1 - 308.0 0.0 0.0 0.7 129.5 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061022 Vmn1r222 ENSMUST00000226672 ENSMUSP00000157644 TRANSLATION protein_coding - CCDS26336.1 - 308.0 0.0 0.0 0.7 129.5 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000005397 Nid1 ENSMUST00000222436 - NO_TRANSLATION retained_intron ENSMUSG00000005397 Nid1 ENSMUST00000005532 ENSMUSP00000005532 TRANSLATION protein_coding - CCDS26244.1 1 1245.0 4.0 14.49 4.2 648.7 0.0 3,-2 1.0 42 18.0 PRINCIPAL:1 ENSMUSG00000005397 Nid1 ENSMUST00000222142 - NO_TRANSLATION retained_intron ENSMUSG00000034928 Rnf44 ENSMUST00000122935 ENSMUSP00000117050 TRANSLATION protein_coding stop - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034928 Rnf44 ENSMUST00000146931 ENSMUSP00000121611 TRANSLATION protein_coding stop - 2 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000034928 Rnf44 ENSMUST00000134862 ENSMUSP00000114259 TRANSLATION protein_coding - CCDS49267.1 5 351.0 8.0 2.825 13.2 49.6 0.0 -4,-5 0.9961 - 18.0 ALTERNATIVE:1 ENSMUSG00000034928 Rnf44 ENSMUST00000123333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034928 Rnf44 ENSMUST00000145215 - NO_TRANSLATION retained_intron ENSMUSG00000034928 Rnf44 ENSMUST00000126717 ENSMUSP00000116043 TRANSLATION protein_coding stop - 3 210.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0011 - -2.0 MINOR ENSMUSG00000034928 Rnf44 ENSMUST00000129881 ENSMUSP00000122161 TRANSLATION protein_coding stop - 3 103.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034928 Rnf44 ENSMUST00000145397 ENSMUSP00000118186 TRANSLATION protein_coding stop - 2 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034928 Rnf44 ENSMUST00000150626 ENSMUSP00000119466 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000034928 Rnf44 ENSMUST00000177950 ENSMUSP00000136732 TRANSLATION protein_coding - CCDS49266.1 1 350.0 8.0 2.825 13.2 49.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000034928 Rnf44 ENSMUST00000128038 - NO_TRANSLATION retained_intron ENSMUSG00000034928 Rnf44 ENSMUST00000150806 ENSMUSP00000123198 TRANSLATION protein_coding - CCDS49267.1 1 351.0 8.0 2.825 13.2 49.6 0.0 -4,-5 0.9961 - 18.0 ALTERNATIVE:1 ENSMUSG00000034928 Rnf44 ENSMUST00000128257 ENSMUSP00000116850 TRANSLATION protein_coding - CCDS49266.1 5 350.0 8.0 2.825 13.2 49.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000034928 Rnf44 ENSMUST00000125927 ENSMUSP00000122292 TRANSLATION protein_coding stop - 3 150.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000034928 Rnf44 ENSMUST00000134177 ENSMUSP00000118244 TRANSLATION protein_coding stop - 5 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034928 Rnf44 ENSMUST00000125871 ENSMUSP00000118474 TRANSLATION protein_coding - CCDS49268.1 1 432.0 8.0 2.825 8.9 49.6 0.0 -4,0 0.7024 - 16.592 MINOR ENSMUSG00000034928 Rnf44 ENSMUST00000037422 ENSMUSP00000043974 TRANSLATION protein_coding - CCDS49266.1 1 350.0 8.0 2.825 13.2 49.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000034928 Rnf44 ENSMUST00000144052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071180 Smim15 ENSMUST00000224361 ENSMUSP00000153283 TRANSLATION protein_coding - CCDS36777.1 - 74.0 0.0 1.0 36.9 111.1 1.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000071180 Smim15 ENSMUST00000224390 ENSMUSP00000152900 TRANSLATION protein_coding - CCDS36777.1 - 74.0 0.0 1.0 36.9 111.1 1.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000071180 Smim15 ENSMUST00000225972 ENSMUSP00000153282 TRANSLATION protein_coding - CCDS36777.1 - 74.0 0.0 1.0 36.9 111.1 1.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000071180 Smim15 ENSMUST00000223808 ENSMUSP00000153155 TRANSLATION protein_coding - CCDS36777.1 - 74.0 0.0 1.0 36.9 111.1 1.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000071180 Smim15 ENSMUST00000226042 ENSMUSP00000153340 TRANSLATION protein_coding - CCDS36777.1 - 74.0 0.0 1.0 36.9 111.1 1.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000071180 Smim15 ENSMUST00000095458 ENSMUSP00000093110 TRANSLATION protein_coding - CCDS36777.1 1 74.0 0.0 1.0 36.9 111.1 1.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021713 Ppwd1 ENSMUST00000022226 ENSMUSP00000022226 TRANSLATION protein_coding - CCDS26748.1 1 646.0 8.0 5.38 12.5 200.6 0.0 -4,-6 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000021713 Ppwd1 ENSMUST00000223755 - NO_TRANSLATION retained_intron ENSMUSG00000021713 Ppwd1 ENSMUST00000225798 - NO_TRANSLATION retained_intron ENSMUSG00000021703 Serinc5 ENSMUST00000049488 ENSMUSP00000047547 TRANSLATION protein_coding - CCDS36744.1 1 461.0 0.0 1.56 26.7 505.6 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000021703 Serinc5 ENSMUST00000224250 - NO_TRANSLATION retained_intron ENSMUSG00000021703 Serinc5 ENSMUST00000224458 - NO_TRANSLATION retained_intron ENSMUSG00000068184 Ndufaf2 ENSMUST00000225830 ENSMUSP00000153552 TRANSLATION protein_coding start/stop - - 83.0 0.0 2.0 0.0 31.9 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000068184 Ndufaf2 ENSMUST00000225702 ENSMUSP00000153468 TRANSLATION nonsense_mediated_decay - - - 45.0 0.0 0.95 0.0 0.0 0.0 -3,-2 0.0 2 -2.0 MINOR ENSMUSG00000068184 Ndufaf2 ENSMUST00000163558 ENSMUSP00000130532 TRANSLATION protein_coding - CCDS49357.1 1 168.0 0.0 3.25 8.3 46.1 0.0 -4,-2 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000068184 Ndufaf2 ENSMUST00000223734 ENSMUSP00000153480 TRANSLATION protein_coding - - - 77.0 0.0 1.95 0.1 27.0 0.0 -4,-2 0.0024 2 6.918 MINOR ENSMUSG00000044934 Zfp367 ENSMUST00000152644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044934 Zfp367 ENSMUST00000134136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044934 Zfp367 ENSMUST00000059817 ENSMUSP00000050854 TRANSLATION protein_coding - CCDS26596.1 1 340.0 10.0 1.92 4.3 51.8 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000044934 Zfp367 ENSMUST00000117241 ENSMUSP00000113331 TRANSLATION protein_coding - - 1 267.0 10.0 1.92 0.0 51.8 0.0 -4,-7 0.0246 1 18.0 MINOR ENSMUSG00000050799 H2bc1 ENSMUST00000052776 ENSMUSP00000056604 TRANSLATION protein_coding - CCDS26373.1 - 127.0 0.0 1.0 14.7 88.6 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000051258 Or2w4 ENSMUST00000051874 ENSMUSP00000061660 TRANSLATION protein_coding - CCDS26282.1 - 308.0 0.0 1.0 8.0 172.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039219 Arid4b ENSMUST00000129488 ENSMUSP00000118687 TRANSLATION protein_coding stop - 1 540.0 0.0 9.157 0.0 199.3 0.0 -4,-5 0.0008 8 -2.0 MINOR ENSMUSG00000039219 Arid4b ENSMUST00000222346 - NO_TRANSLATION retained_intron ENSMUSG00000039219 Arid4b ENSMUST00000148941 - NO_TRANSLATION retained_intron ENSMUSG00000039219 Arid4b ENSMUST00000155553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039219 Arid4b ENSMUST00000110533 ENSMUSP00000106162 TRANSLATION protein_coding - - 1 473.0 0.0 9.157 0.0 199.3 0.0 -4,-5 0.0008 8 6.99 MINOR ENSMUSG00000039219 Arid4b ENSMUST00000110536 ENSMUSP00000106165 TRANSLATION protein_coding - CCDS36600.1 5 1227.0 0.0 9.607 9.9 199.3 0.0 -4,-5 0.7207 12 10.89 MINOR ENSMUSG00000039219 Arid4b ENSMUST00000110534 ENSMUSP00000106163 TRANSLATION protein_coding - CCDS36599.1 1 1314.0 0.0 10.407 9.6 241.1 0.0 -4,-5 1.0 12 14.898 PRINCIPAL:1 ENSMUSG00000039219 Arid4b ENSMUST00000149579 - NO_TRANSLATION retained_intron ENSMUSG00000039219 Arid4b ENSMUST00000151151 ENSMUSP00000152798 TRANSLATION nonsense_mediated_decay start - 3 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039219 Arid4b ENSMUST00000151182 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039219 Arid4b ENSMUST00000039538 ENSMUSP00000043889 TRANSLATION protein_coding - CCDS36600.1 5 1227.0 0.0 9.607 9.9 199.3 0.0 -4,-5 0.7207 12 10.89 MINOR ENSMUSG00000039219 Arid4b ENSMUST00000222928 ENSMUSP00000152177 TRANSLATION nonsense_mediated_decay - - 5 128.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000071281 Zfp65 ENSMUST00000127979 ENSMUSP00000117218 TRANSLATION protein_coding stop - 3 182.0 13.0 2.6 0.0 121.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071281 Zfp65 ENSMUST00000130891 ENSMUSP00000123380 TRANSLATION protein_coding stop - 5 333.0 33.0 4.6 0.0 206.4 0.0 -4,-5 0.0091 - -2.0 MINOR ENSMUSG00000071281 Zfp65 ENSMUST00000223829 ENSMUSP00000153058 TRANSLATION protein_coding stop - - 226.0 19.0 3.6 0.0 145.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071281 Zfp65 ENSMUST00000073157 ENSMUSP00000072900 TRANSLATION protein_coding - CCDS49303.1 1 390.0 42.0 5.6 0.0 265.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000019726 Lyst ENSMUST00000221587 - NO_TRANSLATION retained_intron ENSMUSG00000019726 Lyst ENSMUST00000223053 - NO_TRANSLATION retained_intron ENSMUSG00000019726 Lyst ENSMUST00000220937 - NO_TRANSLATION retained_intron ENSMUSG00000019726 Lyst ENSMUST00000231064 ENSMUSP00000155251 TRANSLATION protein_coding start/stop - - 60.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0083 - -2.0 MINOR ENSMUSG00000019726 Lyst ENSMUST00000110559 ENSMUSP00000106188 TRANSLATION protein_coding - CCDS36597.1 1 3787.0 0.0 6.73 0.4 468.5 0.0 -4,-5 1.0 54 12.0 PRINCIPAL:1 ENSMUSG00000019726 Lyst ENSMUST00000221717 - NO_TRANSLATION retained_intron ENSMUSG00000019726 Lyst ENSMUST00000223527 - NO_TRANSLATION retained_intron ENSMUSG00000019726 Lyst ENSMUST00000221483 - NO_TRANSLATION retained_intron ENSMUSG00000058022 Adtrp ENSMUST00000220680 ENSMUSP00000152611 TRANSLATION nonsense_mediated_decay - - 5 185.0 0.0 3.73 0.0 123.1 8.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000058022 Adtrp ENSMUST00000121404 ENSMUSP00000113661 TRANSLATION protein_coding - CCDS49250.1 1 230.0 0.0 6.174 6.2 214.5 14.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058022 Adtrp ENSMUST00000137905 ENSMUSP00000122312 TRANSLATION protein_coding stop - 2 167.0 0.0 4.58 1.0 162.7 11.0 -4,-5 0.0144 - -2.0 MINOR ENSMUSG00000058022 Adtrp ENSMUST00000223337 ENSMUSP00000152218 TRANSLATION protein_coding stop - 3 89.0 0.0 2.91 0.0 105.6 5.0 2,-3 0.0057 - -2.0 MINOR ENSMUSG00000058022 Adtrp ENSMUST00000072012 ENSMUSP00000071899 TRANSLATION protein_coding - CCDS36642.1 1 262.0 0.0 6.174 0.0 214.5 14.0 -4,0 0.2515 - 12.0 MINOR ENSMUSG00000058022 Adtrp ENSMUST00000220949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058022 Adtrp ENSMUST00000221691 ENSMUSP00000152742 TRANSLATION protein_coding stop - 3 80.0 0.0 1.75 0.0 33.3 3.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000021700 Rab3c ENSMUST00000223922 ENSMUSP00000153347 TRANSLATION protein_coding - - - 225.0 21.0 4.0 26.9 202.9 0.0 -4,-5 0.8957 5 18.0 ALTERNATIVE:1 ENSMUSG00000021700 Rab3c ENSMUST00000224180 ENSMUSP00000153136 TRANSLATION protein_coding - - - 169.0 18.0 3.0 0.0 171.4 0.0 -4,-6 0.0003 4 8.004 MINOR ENSMUSG00000021700 Rab3c ENSMUST00000167824 ENSMUSP00000132945 TRANSLATION protein_coding - CCDS26764.1 1 227.0 21.0 4.0 22.9 202.9 0.0 -4,-6 1.0 7 17.384 PRINCIPAL:3 ENSMUSG00000021700 Rab3c ENSMUST00000226040 - NO_TRANSLATION retained_intron ENSMUSG00000021700 Rab3c ENSMUST00000224287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094379 Vmn1r202 ENSMUST00000078642 ENSMUSP00000077711 TRANSLATION protein_coding - CCDS26320.1 - 302.0 0.0 0.0 0.7 144.6 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094379 Vmn1r202 ENSMUST00000228020 ENSMUSP00000154314 TRANSLATION protein_coding - CCDS26320.1 - 302.0 0.0 0.0 0.7 144.6 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000021692 Dimt1 ENSMUST00000223851 - NO_TRANSLATION retained_intron ENSMUSG00000021692 Dimt1 ENSMUST00000022203 ENSMUSP00000022203 TRANSLATION protein_coding - CCDS26758.1 1 313.0 16.0 8.75 29.9 30.5 0.0 -4,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000021692 Dimt1 ENSMUST00000223870 - NO_TRANSLATION retained_intron ENSMUSG00000021692 Dimt1 ENSMUST00000224052 ENSMUSP00000152938 TRANSLATION nonsense_mediated_decay - - - 71.0 2.0 0.75 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000047246 H2bc6 ENSMUST00000091704 ENSMUSP00000089296 TRANSLATION protein_coding - CCDS26354.1 1 126.0 0.0 1.0 12.5 91.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047246 H2bc6 ENSMUST00000051091 ENSMUSP00000061247 TRANSLATION protein_coding - CCDS26354.1 1 126.0 0.0 1.0 12.5 91.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047246 H2bc6 ENSMUST00000129312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058773 H1f5 ENSMUST00000080511 ENSMUSP00000079356 TRANSLATION protein_coding - CCDS26295.1 - 223.0 0.0 0.6 0.0 80.6 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000021587 Pcsk1 ENSMUST00000135349 - NO_TRANSLATION retained_intron ENSMUSG00000021587 Pcsk1 ENSMUST00000022075 ENSMUSP00000022075 TRANSLATION protein_coding - CCDS26649.1 1 753.0 6.0 13.25 12.3 428.5 0.0 0,-3 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000021587 Pcsk1 ENSMUST00000222727 ENSMUSP00000152702 TRANSLATION protein_coding start/stop - 5 155.0 1.0 3.0 0.0 42.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021635 Rad17 ENSMUST00000225428 - NO_TRANSLATION retained_intron ENSMUSG00000021635 Rad17 ENSMUST00000226050 ENSMUSP00000152977 TRANSLATION nonsense_mediated_decay - - - 229.0 3.0 0.0495 0.0 58.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021635 Rad17 ENSMUST00000177848 ENSMUSP00000136292 TRANSLATION protein_coding - CCDS26733.1 1 688.0 15.0 2.3895 1.5 728.8 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000021635 Rad17 ENSMUST00000022136 ENSMUSP00000022136 TRANSLATION protein_coding - CCDS26733.1 1 688.0 15.0 2.3895 1.5 728.8 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000021635 Rad17 ENSMUST00000225155 - NO_TRANSLATION retained_intron ENSMUSG00000016982 Pom121l2 ENSMUST00000117882 ENSMUSP00000113688 TRANSLATION protein_coding - CCDS49216.1 1 469.0 0.0 0.0 0.3 77.1 0.0 -4,-2 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000016982 Pom121l2 ENSMUST00000017126 ENSMUSP00000017126 TRANSLATION protein_coding - CCDS49217.1 - 972.0 0.0 0.0 0.0 75.3 0.0 -4,-2 0.3744 - 0.0 ALTERNATIVE:2 ENSMUSG00000046159 Chrm3 ENSMUST00000187510 ENSMUSP00000140131 TRANSLATION protein_coding - CCDS26238.1 1 589.0 0.0 0.6 12.5 270.2 6.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000046159 Chrm3 ENSMUST00000190395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046159 Chrm3 ENSMUST00000063093 ENSMUSP00000055579 TRANSLATION protein_coding - CCDS26238.1 - 589.0 0.0 0.6 12.5 270.2 6.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000046159 Chrm3 ENSMUST00000223242 - NO_TRANSLATION retained_intron ENSMUSG00000078994 Zfp429 ENSMUST00000224825 ENSMUSP00000153005 TRANSLATION protein_coding stop - - 110.0 0.0 2.6 0.0 80.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000078994 Zfp429 ENSMUST00000109732 ENSMUSP00000105354 TRANSLATION protein_coding - CCDS36714.1 1 485.0 46.0 3.6 0.0 270.7 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000078994 Zfp429 ENSMUST00000224684 ENSMUSP00000152989 TRANSLATION protein_coding - - - 140.0 1.0 2.65 0.0 80.6 0.0 -4,-6 0.0 1 4.098 MINOR ENSMUSG00000078994 Zfp429 ENSMUST00000181071 ENSMUSP00000137755 TRANSLATION protein_coding - - 1 115.0 0.0 1.8 0.0 80.6 0.0 -4,-5 0.0 - 2.4 MINOR ENSMUSG00000071291 Zfp58 ENSMUST00000091523 ENSMUSP00000089108 TRANSLATION protein_coding stop - 3 241.0 20.0 3.05 0.0 198.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000071291 Zfp58 ENSMUST00000171518 ENSMUSP00000132285 TRANSLATION protein_coding - CCDS26616.1 1 489.0 56.0 4.05 0.4 378.9 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000071291 Zfp58 ENSMUST00000076123 ENSMUSP00000075487 TRANSLATION protein_coding - CCDS26616.1 1 489.0 56.0 4.05 0.4 378.9 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000071291 Zfp58 ENSMUST00000163534 ENSMUSP00000129177 TRANSLATION protein_coding stop - 3 169.0 8.0 2.05 0.0 122.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032727 Mier3 ENSMUST00000109272 ENSMUSP00000104895 TRANSLATION protein_coding - CCDS26770.2 1 551.0 4.0 2.0195 15.3 63.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:4 ENSMUSG00000032727 Mier3 ENSMUST00000146726 - NO_TRANSLATION retained_intron ENSMUSG00000032727 Mier3 ENSMUST00000137268 ENSMUSP00000117483 TRANSLATION nonsense_mediated_decay - - 5 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032727 Mier3 ENSMUST00000047412 ENSMUSP00000036809 TRANSLATION protein_coding - - 1 523.0 4.0 2.0195 12.4 63.5 0.0 -4,-5 0.7866 1 15.188 ALTERNATIVE:1 ENSMUSG00000032727 Mier3 ENSMUST00000232560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032727 Mier3 ENSMUST00000231273 ENSMUSP00000155930 TRANSLATION protein_coding stop - - 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032727 Mier3 ENSMUST00000232398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032727 Mier3 ENSMUST00000109271 ENSMUSP00000104894 TRANSLATION protein_coding start - 5 549.0 4.0 2.0195 15.3 63.5 0.0 -4,-5 0.8513 1 -2.0 MINOR ENSMUSG00000032727 Mier3 ENSMUST00000231466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032727 Mier3 ENSMUST00000231713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032727 Mier3 ENSMUST00000231979 ENSMUSP00000156206 TRANSLATION protein_coding stop - - 145.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021578 Ccdc127 ENSMUST00000160021 ENSMUSP00000124193 TRANSLATION protein_coding - CCDS49314.1 1 163.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.073 5 2.184 MINOR ENSMUSG00000021578 Ccdc127 ENSMUST00000162376 ENSMUSP00000123805 TRANSLATION protein_coding stop - 1 238.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0079 8 -2.0 MINOR ENSMUSG00000021578 Ccdc127 ENSMUST00000159931 ENSMUSP00000124009 TRANSLATION nonsense_mediated_decay - - 5 171.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0035 5 -2.0 MINOR ENSMUSG00000021578 Ccdc127 ENSMUST00000223491 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021578 Ccdc127 ENSMUST00000022063 ENSMUSP00000022063 TRANSLATION protein_coding - CCDS26644.1 1 260.0 0.0 2.75 18.5 0.0 0.0 -4,-5 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000021578 Ccdc127 ENSMUST00000162672 ENSMUSP00000125027 TRANSLATION protein_coding - - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0105 - 0.0 MINOR ENSMUSG00000041417 Pik3r1 ENSMUST00000185795 ENSMUSP00000140312 TRANSLATION protein_coding stop - 1 112.0 0.0 2.7 0.0 69.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000041417 Pik3r1 ENSMUST00000185701 - NO_TRANSLATION retained_intron ENSMUSG00000041417 Pik3r1 ENSMUST00000187009 ENSMUSP00000140256 TRANSLATION protein_coding stop - 5 174.0 0.0 5.0 0.0 150.5 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000041417 Pik3r1 ENSMUST00000189426 - NO_TRANSLATION retained_intron ENSMUSG00000041417 Pik3r1 ENSMUST00000190171 - NO_TRANSLATION retained_intron ENSMUSG00000041417 Pik3r1 ENSMUST00000055518 ENSMUSP00000056774 TRANSLATION protein_coding - CCDS36769.1 1 724.0 0.0 15.2 31.7 453.5 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000041417 Pik3r1 ENSMUST00000035532 ENSMUSP00000047004 TRANSLATION protein_coding - CCDS26740.1 1 454.0 0.0 9.7 24.1 348.9 0.0 -4,-5 0.5741 12 3.008 MINOR ENSMUSG00000021579 Lrrc14b ENSMUST00000022064 ENSMUSP00000022064 TRANSLATION protein_coding - CCDS26645.1 1 510.0 0.0 1.44 9.8 0.0 0.0 -4,-7 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000007836 Hnrnpa0 ENSMUST00000007980 ENSMUSP00000007980 TRANSLATION protein_coding - CCDS49280.1 - 305.0 0.0 1.0 0.0 106.2 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000021550 Qng1 ENSMUST00000022032 ENSMUSP00000022032 TRANSLATION protein_coding - CCDS49282.1 1 338.0 0.0 4.0 9.2 388.6 0.0 -4,-7 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000042102 Dmgdh ENSMUST00000048001 ENSMUSP00000039663 TRANSLATION protein_coding - CCDS26690.1 1 869.0 34.0 14.849 0.0 570.1 0.0 -4,0 1.0 28 18.0 PRINCIPAL:1 ENSMUSG00000042102 Dmgdh ENSMUST00000126196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021303 Gng4 ENSMUST00000220727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021303 Gng4 ENSMUST00000021734 ENSMUSP00000021734 TRANSLATION protein_coding - CCDS36598.1 1 75.0 0.0 2.0 33.8 58.4 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021303 Gng4 ENSMUST00000138783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021693 Kif2a ENSMUST00000122233 ENSMUSP00000112715 TRANSLATION protein_coding - CCDS26759.1 1 716.0 11.0 10.0 8.1 311.7 0.0 -4,-5 0.8759 17 15.832 MINOR ENSMUSG00000021693 Kif2a ENSMUST00000022204 ENSMUSP00000022204 TRANSLATION protein_coding - CCDS49356.1 1 705.0 11.0 10.0 16.5 311.7 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:4 ENSMUSG00000021693 Kif2a ENSMUST00000162845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021693 Kif2a ENSMUST00000117539 ENSMUSP00000113361 TRANSLATION protein_coding start - 1 671.0 11.0 10.0 0.0 311.7 0.0 -4,-5 0.0335 16 -2.0 MINOR ENSMUSG00000021693 Kif2a ENSMUST00000146395 ENSMUSP00000116070 TRANSLATION protein_coding start/stop - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021693 Kif2a ENSMUST00000117423 ENSMUSP00000113921 TRANSLATION protein_coding - - 5 659.0 11.0 10.0 7.0 311.7 0.0 -4,-5 0.5578 17 15.548 MINOR ENSMUSG00000021693 Kif2a ENSMUST00000159772 ENSMUSP00000125644 TRANSLATION protein_coding - - 5 743.0 11.0 10.0 15.1 311.7 0.0 -4,-5 0.8036 17 17.64 ALTERNATIVE:1 ENSMUSG00000021583 Erap1 ENSMUST00000169114 ENSMUSP00000133166 TRANSLATION protein_coding - CCDS26647.1 1 930.0 16.0 18.925 0.1 527.3 0.0 3,-1 1.0 34 18.0 PRINCIPAL:1 ENSMUSG00000021583 Erap1 ENSMUST00000221822 ENSMUSP00000152705 TRANSLATION protein_coding stop - 3 95.0 0.0 2.5 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000021583 Erap1 ENSMUST00000221606 - NO_TRANSLATION retained_intron ENSMUSG00000021583 Erap1 ENSMUST00000221526 ENSMUSP00000152462 TRANSLATION protein_coding stop - 2 78.0 0.0 0.8 0.0 0.0 0.0 3,-1 0.0012 1 -2.0 MINOR ENSMUSG00000021583 Erap1 ENSMUST00000222127 ENSMUSP00000152076 TRANSLATION protein_coding start/stop - 3 220.0 0.0 4.625 0.0 74.9 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000021583 Erap1 ENSMUST00000220594 - NO_TRANSLATION retained_intron ENSMUSG00000021669 Cert1 ENSMUST00000077672 ENSMUSP00000076856 TRANSLATION protein_coding - CCDS26705.1 1 624.0 11.0 8.8025 23.5 165.4 0.0 -4,-5 0.9578 16 17.156 ALTERNATIVE:1 ENSMUSG00000021669 Cert1 ENSMUST00000109444 ENSMUSP00000105070 TRANSLATION protein_coding - CCDS49335.1 1 598.0 11.0 8.8025 29.5 165.4 0.0 -4,-5 1.0 16 18.0 PRINCIPAL:4 ENSMUSG00000021669 Cert1 ENSMUST00000222434 - NO_TRANSLATION retained_intron ENSMUSG00000021669 Cert1 ENSMUST00000223471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021669 Cert1 ENSMUST00000220464 - NO_TRANSLATION retained_intron ENSMUSG00000021669 Cert1 ENSMUST00000221394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078941 Ak6 ENSMUST00000022135 ENSMUSP00000022135 TRANSLATION protein_coding - CCDS26734.1 1 172.0 7.0 3.83 31.1 105.5 0.0 -4,-5 1.0 2 18.022 PRINCIPAL:1 ENSMUSG00000078941 Ak6 ENSMUST00000185901 - NO_TRANSLATION retained_intron ENSMUSG00000078941 Ak6 ENSMUST00000190729 ENSMUSP00000140648 TRANSLATION protein_coding - - 1 41.0 7.0 1.33 0.0 37.5 0.0 -4,-5 0.0006 2 7.002 MINOR ENSMUSG00000078941 Ak6 ENSMUST00000084721 ENSMUSP00000081772 TRANSLATION protein_coding - CCDS26735.1 1 264.0 0.0 0.8 1.2 171.8 0.0 -4,-5 0.2437 4 6.028 MINOR ENSMUSG00000078941 Ak6 ENSMUST00000190210 - NO_TRANSLATION retained_intron ENSMUSG00000021759 Plpp1 ENSMUST00000016144 ENSMUSP00000016144 TRANSLATION protein_coding - CCDS26776.1 1 284.0 5.0 3.75 18.6 95.4 6.0 -2,-5 0.9702 6 14.202 ALTERNATIVE:1 ENSMUSG00000021759 Plpp1 ENSMUST00000070951 ENSMUSP00000064423 TRANSLATION protein_coding - CCDS26777.1 1 283.0 5.0 4.15 18.6 95.4 6.0 -2,-5 1.0 6 15.0 PRINCIPAL:4 ENSMUSG00000109228 Fam81b ENSMUST00000208586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109228 Fam81b ENSMUST00000208418 ENSMUSP00000146649 TRANSLATION protein_coding - - 5 432.0 0.0 7.0 0.0 0.0 0.0 -4,-5 0.6571 3 6.0 PRINCIPAL:1 ENSMUSG00000021302 Ggps1 ENSMUST00000170957 ENSMUSP00000126603 TRANSLATION protein_coding - CCDS26248.1 1 300.0 19.0 6.66 22.7 222.8 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000021302 Ggps1 ENSMUST00000222747 ENSMUSP00000152789 TRANSLATION nonsense_mediated_decay - - 5 236.0 19.0 5.7689 0.0 213.2 0.0 -4,-5 0.0055 6 -2.0 MINOR ENSMUSG00000021302 Ggps1 ENSMUST00000223090 ENSMUSP00000152512 TRANSLATION nonsense_mediated_decay start - 2 106.0 9.0 2.16 0.0 106.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021302 Ggps1 ENSMUST00000223174 ENSMUSP00000152645 TRANSLATION protein_coding stop - 2 181.0 15.0 4.41 0.0 153.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021302 Ggps1 ENSMUST00000223329 ENSMUSP00000152754 TRANSLATION protein_coding start - 3 101.0 7.0 2.6089 0.0 84.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021302 Ggps1 ENSMUST00000221713 ENSMUSP00000152305 TRANSLATION protein_coding - - 3 26.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000021302 Ggps1 ENSMUST00000221953 ENSMUSP00000152753 TRANSLATION protein_coding stop - 3 116.0 10.0 2.5 0.0 97.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021302 Ggps1 ENSMUST00000221338 ENSMUSP00000152649 TRANSLATION protein_coding stop - 3 126.0 11.0 2.83 0.0 107.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021302 Ggps1 ENSMUST00000222687 ENSMUSP00000152355 TRANSLATION protein_coding stop - 2 155.0 16.0 3.66 0.0 154.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021302 Ggps1 ENSMUST00000222164 ENSMUSP00000152428 TRANSLATION nonsense_mediated_decay - - 1 236.0 19.0 5.7689 0.0 213.2 0.0 -4,-5 0.0055 - -2.0 MINOR ENSMUSG00000021302 Ggps1 ENSMUST00000221406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000114635 Gm49392 ENSMUST00000225690 ENSMUSP00000153567 TRANSLATION nonsense_mediated_decay,RT - - - 74.0 0.0 1.75 0.0 48.4 0.0 -4,-5 0.7488 - -2.0 PRINCIPAL:1 ENSMUSG00000038327 Serpinb9f ENSMUST00000075515 ENSMUSP00000074958 TRANSLATION protein_coding - CCDS26436.1 1 377.0 0.0 5.0 12.5 419.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000019132 BC005537 ENSMUST00000019276 ENSMUSP00000019276 TRANSLATION protein_coding - CCDS26379.1 1 229.0 0.0 0.0 36.9 457.8 0.0 -4,-7 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000019132 BC005537 ENSMUST00000155575 ENSMUSP00000123652 TRANSLATION protein_coding stop - 3 167.0 0.0 0.0 0.0 308.4 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000025451 Paip1 ENSMUST00000026520 ENSMUSP00000026520 TRANSLATION protein_coding - CCDS26796.1 1 400.0 0.0 7.83 10.0 156.7 0.0 -4,-5 0.9082 7 10.307 PRINCIPAL:3 ENSMUSG00000025451 Paip1 ENSMUST00000174533 ENSMUSP00000134365 TRANSLATION protein_coding start/stop - 5 189.0 0.0 3.75 0.0 26.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025451 Paip1 ENSMUST00000109203 ENSMUSP00000104826 TRANSLATION protein_coding - CCDS36791.1 5 367.0 0.0 7.83 12.7 156.7 0.0 -3,-6 1.0 5 11.0 ALTERNATIVE:1 ENSMUSG00000025451 Paip1 ENSMUST00000173627 ENSMUSP00000134051 TRANSLATION protein_coding - - 5 410.0 0.0 7.83 0.0 156.7 0.0 -4,-5 0.0224 7 8.0 MINOR ENSMUSG00000025451 Paip1 ENSMUST00000132304 ENSMUSP00000134617 TRANSLATION nonsense_mediated_decay start - 5 276.0 0.0 3.3 0.0 81.6 0.0 -4,-7 0.0003 4 -2.0 MINOR ENSMUSG00000025451 Paip1 ENSMUST00000173339 - NO_TRANSLATION retained_intron ENSMUSG00000025451 Paip1 ENSMUST00000174691 ENSMUSP00000134502 TRANSLATION protein_coding start/stop - 5 207.0 0.0 4.25 0.0 110.3 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000025451 Paip1 ENSMUST00000126957 ENSMUSP00000117256 TRANSLATION protein_coding - - 5 484.0 0.0 7.83 2.3 156.7 0.0 -4,-6 0.2315 9 8.333 MINOR ENSMUSG00000076757 Trgc4 ENSMUST00000179181 ENSMUSP00000138488 TRANSLATION TR_C_gene start - - 190.0 0.0 0.8 0.0 38.8 0.0 -4,-5 0.7715 - -2.0 PRINCIPAL:1 ENSMUSG00000021400 Wrnip1 ENSMUST00000221066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021400 Wrnip1 ENSMUST00000220560 - NO_TRANSLATION retained_intron ENSMUSG00000021400 Wrnip1 ENSMUST00000021832 ENSMUSP00000021832 TRANSLATION protein_coding - CCDS26427.1 1 660.0 12.0 3.15 4.3 145.2 0.0 -4,-5 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000021400 Wrnip1 ENSMUST00000230949 - NO_TRANSLATION retained_intron ENSMUSG00000021400 Wrnip1 ENSMUST00000229351 ENSMUSP00000154988 TRANSLATION nonsense_mediated_decay start - - 25.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095930 Nim1k ENSMUST00000178973 - NO_TRANSLATION retained_intron ENSMUSG00000095930 Nim1k ENSMUST00000178142 ENSMUSP00000136377 TRANSLATION protein_coding - CCDS56902.1 1 436.0 17.0 3.0 27.9 237.9 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000021613 Hapln1 ENSMUST00000225678 - NO_TRANSLATION retained_intron ENSMUSG00000021613 Hapln1 ENSMUST00000022108 ENSMUSP00000022108 TRANSLATION protein_coding - CCDS26671.1 1 356.0 0.0 3.0 24.7 244.6 0.0 4,-1 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000021756 Il6st ENSMUST00000184276 ENSMUSP00000139060 TRANSLATION nonsense_mediated_decay - - 5 346.0 0.0 6.08 0.0 166.1 0.0 3,-2 0.0039 4 -2.0 MINOR ENSMUSG00000021756 Il6st ENSMUST00000070731 ENSMUSP00000064205 TRANSLATION protein_coding - CCDS26773.1 5 917.0 0.0 12.91 4.7 200.4 1.0 3,-2 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000021756 Il6st ENSMUST00000183829 ENSMUSP00000138987 TRANSLATION protein_coding - - 5 203.0 0.0 3.08 0.0 67.4 0.0 3,-2 0.0 2 0.0 MINOR ENSMUSG00000021756 Il6st ENSMUST00000184445 ENSMUSP00000139311 TRANSLATION protein_coding - - 5 327.0 0.0 6.08 0.0 166.1 0.0 3,-2 0.0039 4 3.942 MINOR ENSMUSG00000021756 Il6st ENSMUST00000183663 ENSMUSP00000138836 TRANSLATION protein_coding - CCDS26773.1 1 917.0 0.0 12.91 4.7 200.4 1.0 3,-2 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000021756 Il6st ENSMUST00000184311 ENSMUSP00000139227 TRANSLATION protein_coding - CCDS26773.1 5 917.0 0.0 12.91 4.7 200.4 1.0 3,-2 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000021756 Il6st ENSMUST00000183886 ENSMUSP00000138820 TRANSLATION protein_coding - - 1 164.0 0.0 3.08 0.0 100.6 0.0 3,-2 0.0 1 0.012 MINOR ENSMUSG00000021756 Il6st ENSMUST00000183513 ENSMUSP00000139016 TRANSLATION protein_coding - - 5 66.0 0.0 0.0 0.0 0.0 0.0 3,-1 0.0012 - 0.0 MINOR ENSMUSG00000021756 Il6st ENSMUST00000184949 ENSMUSP00000138915 TRANSLATION protein_coding - - 5 856.0 0.0 11.91 0.0 200.4 1.0 3,-2 0.0837 12 10.002 MINOR ENSMUSG00000021756 Il6st ENSMUST00000183868 ENSMUSP00000139180 TRANSLATION protein_coding stop - 5 45.0 0.0 0.75 0.0 0.0 0.0 3,-2 0.0018 - -2.0 MINOR ENSMUSG00000046016 Or2w2 ENSMUST00000213912 ENSMUSP00000149964 TRANSLATION protein_coding - CCDS26281.1 5 314.0 0.0 1.0 0.0 164.4 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046016 Or2w2 ENSMUST00000206526 ENSMUSP00000145658 TRANSLATION protein_coding - CCDS26281.1 3 314.0 0.0 1.0 0.0 164.4 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046016 Or2w2 ENSMUST00000057453 ENSMUSP00000059544 TRANSLATION protein_coding - CCDS26281.1 - 314.0 0.0 1.0 0.0 164.4 5.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046016 Or2w2 ENSMUST00000216898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021575 Ahrr ENSMUST00000222032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021575 Ahrr ENSMUST00000022059 ENSMUSP00000022059 TRANSLATION protein_coding - CCDS26641.1 1 701.0 0.0 4.0 0.4 62.0 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021575 Ahrr ENSMUST00000123058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021575 Ahrr ENSMUST00000137538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021575 Ahrr ENSMUST00000148438 - NO_TRANSLATION retained_intron ENSMUSG00000021575 Ahrr ENSMUST00000109640 ENSMUSP00000105268 TRANSLATION protein_coding - CCDS84037.1 1 573.0 0.0 2.3 0.3 0.0 0.0 -4,-6 0.0141 - 2.598 MINOR ENSMUSG00000021575 Ahrr ENSMUST00000222649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021636 Marveld2 ENSMUST00000163163 ENSMUSP00000129990 TRANSLATION protein_coding - CCDS49345.1 1 278.0 0.0 2.5 0.0 105.5 0.0 -4,-7 0.1025 4 8.148 MINOR ENSMUSG00000021636 Marveld2 ENSMUST00000225754 ENSMUSP00000153294 TRANSLATION protein_coding - CCDS26732.1 - 555.0 0.0 2.5 7.1 169.7 4.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000021636 Marveld2 ENSMUST00000022137 ENSMUSP00000022137 TRANSLATION protein_coding - CCDS26732.1 1 555.0 0.0 2.5 7.1 169.7 4.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000021488 Nsd1 ENSMUST00000225194 - NO_TRANSLATION retained_intron ENSMUSG00000021488 Nsd1 ENSMUST00000225405 - NO_TRANSLATION retained_intron ENSMUSG00000021488 Nsd1 ENSMUST00000224338 - NO_TRANSLATION retained_intron ENSMUSG00000021488 Nsd1 ENSMUST00000224918 ENSMUSP00000153511 TRANSLATION protein_coding - - - 158.0 0.0 1.4 0.0 58.5 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000021488 Nsd1 ENSMUST00000224693 ENSMUSP00000152939 TRANSLATION protein_coding - - - 158.0 0.0 1.4 0.0 58.5 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000021488 Nsd1 ENSMUST00000223894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021488 Nsd1 ENSMUST00000225169 ENSMUSP00000153503 TRANSLATION protein_coding stop - - 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0185 - -2.0 MINOR ENSMUSG00000021488 Nsd1 ENSMUST00000225982 - NO_TRANSLATION retained_intron ENSMUSG00000021488 Nsd1 ENSMUST00000224156 ENSMUSP00000153366 TRANSLATION protein_coding - - - 158.0 0.0 1.4 0.0 58.5 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000021488 Nsd1 ENSMUST00000099490 ENSMUSP00000097089 TRANSLATION protein_coding - CCDS36673.1 5 2691.0 27.0 8.9 0.3 191.6 0.0 -4,-5 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000021488 Nsd1 ENSMUST00000224973 ENSMUSP00000153677 TRANSLATION protein_coding - - - 2588.0 27.0 7.5 0.0 139.0 0.0 -4,-5 0.1102 23 12.042 MINOR ENSMUSG00000046949 Nqo2 ENSMUST00000223479 ENSMUSP00000152598 TRANSLATION protein_coding stop - 3 187.0 16.0 5.0 0.0 172.6 0.0 -4,-5 0.0001 10 -2.0 MINOR ENSMUSG00000046949 Nqo2 ENSMUST00000058978 ENSMUSP00000053809 TRANSLATION protein_coding - CCDS26442.1 1 231.0 20.0 6.0 15.1 180.3 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000046949 Nqo2 ENSMUST00000222740 ENSMUSP00000152294 TRANSLATION protein_coding - CCDS26442.1 1 231.0 20.0 6.0 15.1 180.3 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000046949 Nqo2 ENSMUST00000021843 ENSMUSP00000021843 TRANSLATION protein_coding - CCDS26442.1 1 231.0 20.0 6.0 15.1 180.3 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000046949 Nqo2 ENSMUST00000220844 ENSMUSP00000152068 TRANSLATION protein_coding - - 1 187.0 14.0 5.0 3.4 130.2 0.0 -4,-6 0.0383 10 9.674 MINOR ENSMUSG00000021548 Ccnh ENSMUST00000163600 ENSMUSP00000129349 TRANSLATION protein_coding - CCDS84047.1 5 287.0 0.0 6.45375 0.0 35.5 0.0 -4,-7 0.0085 5 4.638 MINOR ENSMUSG00000021548 Ccnh ENSMUST00000022030 ENSMUSP00000022030 TRANSLATION protein_coding - CCDS26666.1 1 323.0 0.0 7.53375 20.6 122.2 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000021548 Ccnh ENSMUST00000166932 - NO_TRANSLATION retained_intron ENSMUSG00000021548 Ccnh ENSMUST00000172029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021548 Ccnh ENSMUST00000164127 ENSMUSP00000131136 TRANSLATION protein_coding - - 1 327.0 0.0 7.53375 1.1 122.2 0.0 -4,-7 0.2449 8 12.02 MINOR ENSMUSG00000021548 Ccnh ENSMUST00000165077 ENSMUSP00000130839 TRANSLATION protein_coding stop - 1 142.0 0.0 3.83 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000021548 Ccnh ENSMUST00000163713 ENSMUSP00000130820 TRANSLATION protein_coding start - 2 121.0 0.0 2.70375 0.0 48.1 0.0 -3,-6 0.0 3 -2.0 MINOR ENSMUSG00000060981 H4c8 ENSMUST00000102972 ENSMUSP00000100037 TRANSLATION protein_coding - CCDS26340.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021519 Mterf3 ENSMUST00000173407 ENSMUSP00000133594 TRANSLATION nonsense_mediated_decay - - 5 150.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021519 Mterf3 ENSMUST00000173773 ENSMUSP00000133596 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021519 Mterf3 ENSMUST00000174011 - NO_TRANSLATION retained_intron ENSMUSG00000021519 Mterf3 ENSMUST00000173158 ENSMUSP00000134032 TRANSLATION nonsense_mediated_decay - - 1 150.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021519 Mterf3 ENSMUST00000172597 ENSMUSP00000133433 TRANSLATION protein_coding stop - 5 204.0 0.0 1.5 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021519 Mterf3 ENSMUST00000224085 ENSMUSP00000152951 TRANSLATION nonsense_mediated_decay - - - 158.0 0.0 0.5 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021519 Mterf3 ENSMUST00000173062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021519 Mterf3 ENSMUST00000174339 ENSMUSP00000134286 TRANSLATION protein_coding stop - 2 123.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021519 Mterf3 ENSMUST00000172807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021519 Mterf3 ENSMUST00000223875 - NO_TRANSLATION retained_intron ENSMUSG00000021519 Mterf3 ENSMUST00000173910 ENSMUSP00000133456 TRANSLATION nonsense_mediated_decay - - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000021519 Mterf3 ENSMUST00000021991 ENSMUSP00000021991 TRANSLATION protein_coding - CCDS26611.1 1 412.0 0.0 5.83 8.8 99.3 0.0 -4,-1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000021519 Mterf3 ENSMUST00000173891 ENSMUSP00000133330 TRANSLATION protein_coding start - 5 90.0 0.0 1.33 0.0 32.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021519 Mterf3 ENSMUST00000174134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044951 Mylk4 ENSMUST00000132206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044951 Mylk4 ENSMUST00000229922 - NO_TRANSLATION retained_intron ENSMUSG00000044951 Mylk4 ENSMUST00000057428 ENSMUSP00000060149 TRANSLATION protein_coding - CCDS49225.1 5 387.0 18.0 7.78 0.9 248.0 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:2 ENSMUSG00000044951 Mylk4 ENSMUST00000238977 ENSMUSP00000159085 TRANSLATION protein_coding - - - 667.0 18.0 7.78 0.0 248.0 0.0 -4,-5 0.1038 3 14.0 ALTERNATIVE:2 ENSMUSG00000044951 Mylk4 ENSMUST00000230119 ENSMUSP00000155702 TRANSLATION protein_coding stop - - 476.0 17.0 4.5 0.0 128.3 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000055679 Ctsr ENSMUST00000021889 ENSMUSP00000021889 TRANSLATION protein_coding - CCDS26585.1 1 334.0 4.0 6.2 11.3 297.6 0.0 4,-1 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000021647 Cartpt ENSMUST00000224142 ENSMUSP00000152981 TRANSLATION protein_coding - - - 116.0 0.0 1.3 17.2 133.1 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000021647 Cartpt ENSMUST00000022150 ENSMUSP00000022150 TRANSLATION protein_coding - CCDS36763.1 1 129.0 0.0 1.3 0.1 122.6 0.0 4,-1 0.1794 3 11.37 MINOR ENSMUSG00000021361 Tmem14c ENSMUST00000021790 ENSMUSP00000021790 TRANSLATION protein_coding - CCDS26470.1 1 114.0 0.0 3.0 11.0 100.9 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000038732 Mboat1 ENSMUST00000153269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038732 Mboat1 ENSMUST00000222095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038732 Mboat1 ENSMUST00000047311 ENSMUSP00000045441 TRANSLATION protein_coding - CCDS26414.1 1 492.0 0.0 6.307 9.8 93.5 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000038732 Mboat1 ENSMUST00000152798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038732 Mboat1 ENSMUST00000220870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038982 Bloc1s5 ENSMUST00000224115 ENSMUSP00000153650 TRANSLATION protein_coding - - - 149.0 0.0 2.25 0.0 124.0 0.0 -4,-5 0.0 3 6.924 MINOR ENSMUSG00000038982 Bloc1s5 ENSMUST00000224902 ENSMUSP00000153368 TRANSLATION protein_coding - - - 169.0 0.0 2.25 0.0 124.0 0.0 -4,-5 0.0004 3 6.924 MINOR ENSMUSG00000038982 Bloc1s5 ENSMUST00000035899 ENSMUSP00000036614 TRANSLATION protein_coding - CCDS26464.1 1 185.0 0.0 3.25 12.5 175.3 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000095105 Edaradd ENSMUST00000179308 ENSMUSP00000136158 TRANSLATION protein_coding - CCDS36593.1 1 208.0 0.0 1.0 6.9 39.4 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000021592 Arsk ENSMUST00000224632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021592 Arsk ENSMUST00000223579 ENSMUSP00000153634 TRANSLATION nonsense_mediated_decay - - - 51.0 0.0 0.0 0.0 0.0 0.0 3,-3 0.0 - -2.0 MINOR ENSMUSG00000021592 Arsk ENSMUST00000224262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021592 Arsk ENSMUST00000239063 ENSMUSP00000158928 TRANSLATION protein_coding - - - 553.0 3.0 6.93 0.0 160.2 0.0 3,-3 0.3052 4 9.0 ALTERNATIVE:2 ENSMUSG00000021592 Arsk ENSMUST00000225642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021592 Arsk ENSMUST00000224884 - NO_TRANSLATION retained_intron ENSMUSG00000021592 Arsk ENSMUST00000120573 ENSMUSP00000113274 TRANSLATION protein_coding - CCDS49315.1 1 556.0 3.0 6.93 0.0 160.2 0.0 4,-1 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000069208 Zfp825 ENSMUST00000202645 ENSMUSP00000144128 TRANSLATION protein_coding - CCDS79212.1 1 274.0 27.0 1.24 0.0 191.1 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000069208 Zfp825 ENSMUST00000074369 ENSMUSP00000073973 TRANSLATION protein_coding start - 5 273.0 27.0 1.24 0.0 191.1 0.0 -4,-5 0.3031 1 -2.0 MINOR ENSMUSG00000069208 Zfp825 ENSMUST00000221173 ENSMUSP00000152719 TRANSLATION protein_coding - - 3 292.0 27.0 1.24 0.0 191.1 0.0 -4,-5 0.1053 1 14.0 ALTERNATIVE:2 ENSMUSG00000021210 Akr1c6 ENSMUST00000156277 ENSMUSP00000117624 TRANSLATION protein_coding stop - 5 174.0 23.0 5.08 0.0 119.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021210 Akr1c6 ENSMUST00000220941 ENSMUSP00000152575 TRANSLATION nonsense_mediated_decay - - 5 103.0 12.0 2.74 0.0 36.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021210 Akr1c6 ENSMUST00000021630 ENSMUSP00000021630 TRANSLATION protein_coding - CCDS26223.1 1 323.0 48.0 8.83 10.3 190.7 0.0 -4,-5 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000021210 Akr1c6 ENSMUST00000128695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021210 Akr1c6 ENSMUST00000223118 ENSMUSP00000152778 TRANSLATION protein_coding start - 5 135.0 31.0 3.25 0.0 67.9 0.0 -4,-5 0.0006 3 -2.0 MINOR ENSMUSG00000047842 Diras2 ENSMUST00000057442 ENSMUSP00000055416 TRANSLATION protein_coding - CCDS26516.1 1 199.0 20.0 1.0 36.9 166.2 0.0 -4,-6 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000044734 Serpinb1a ENSMUST00000076352 ENSMUSP00000075690 TRANSLATION protein_coding - CCDS26428.1 1 379.0 0.0 5.8 28.0 444.2 1.0 -4,-6 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000044734 Serpinb1a ENSMUST00000223016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044734 Serpinb1a ENSMUST00000091668 ENSMUSP00000089257 TRANSLATION protein_coding stop - 3 188.0 0.0 4.0 0.0 211.3 1.0 -4,-6 0.0015 8 -2.0 MINOR ENSMUSG00000044734 Serpinb1a ENSMUST00000221967 - NO_TRANSLATION retained_intron ENSMUSG00000055298 Ctsj ENSMUST00000224306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055298 Ctsj ENSMUST00000071526 ENSMUSP00000071457 TRANSLATION protein_coding - CCDS49291.1 1 333.0 4.0 6.3 1.1 308.9 0.0 4,-1 1.0 - 13.0 PRINCIPAL:2 ENSMUSG00000055298 Ctsj ENSMUST00000224224 ENSMUSP00000153389 TRANSLATION protein_coding - - - 334.0 4.0 6.3 1.1 312.6 0.0 3,-1 0.5103 - 13.0 ALTERNATIVE:2 ENSMUSG00000044988 Ucn3 ENSMUST00000058610 ENSMUSP00000049678 TRANSLATION protein_coding - CCDS26217.1 1 164.0 0.0 0.4 4.3 46.9 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038286 Bphl ENSMUST00000040656 ENSMUSP00000046168 TRANSLATION protein_coding - CCDS49229.1 1 291.0 0.0 6.316 3.4 73.1 0.0 -4,0 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000038286 Bphl ENSMUST00000221124 - NO_TRANSLATION retained_intron ENSMUSG00000038286 Bphl ENSMUST00000222658 ENSMUSP00000152050 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000038286 Bphl ENSMUST00000223251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038286 Bphl ENSMUST00000220717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038286 Bphl ENSMUST00000222691 ENSMUSP00000152684 TRANSLATION nonsense_mediated_decay - - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000052374 Actn2 ENSMUST00000064204 ENSMUSP00000067708 TRANSLATION protein_coding - CCDS26239.1 1 894.0 7.0 20.33 35.1 530.9 0.0 -4,-5 1.0 39 22.0 PRINCIPAL:1 ENSMUSG00000052374 Actn2 ENSMUST00000222034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052374 Actn2 ENSMUST00000110616 - NO_TRANSLATION retained_intron ENSMUSG00000052374 Actn2 ENSMUST00000221162 ENSMUSP00000152121 TRANSLATION protein_coding start/stop - 5 192.0 0.0 4.08 0.0 63.3 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000052374 Actn2 ENSMUST00000168193 ENSMUSP00000129609 TRANSLATION protein_coding - CCDS26239.1 5 894.0 7.0 20.33 35.1 530.9 0.0 -4,-5 1.0 39 22.0 PRINCIPAL:1 ENSMUSG00000006717 Acot13 ENSMUST00000224839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006717 Acot13 ENSMUST00000006900 ENSMUSP00000006900 TRANSLATION protein_coding - CCDS26380.1 1 140.0 8.0 2.75 23.5 64.1 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000041297 Cdk13 ENSMUST00000222359 - NO_TRANSLATION retained_intron ENSMUSG00000041297 Cdk13 ENSMUST00000220714 - NO_TRANSLATION retained_intron ENSMUSG00000041297 Cdk13 ENSMUST00000223490 ENSMUSP00000152820 TRANSLATION protein_coding - - 1 1451.0 17.0 7.85 5.8 249.0 0.0 -4,-5 0.9104 17 14.0 ALTERNATIVE:1 ENSMUSG00000041297 Cdk13 ENSMUST00000042365 ENSMUSP00000036013 TRANSLATION protein_coding - CCDS36604.1 1 1511.0 17.0 7.85 5.8 249.0 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:3 ENSMUSG00000041297 Cdk13 ENSMUST00000221775 ENSMUSP00000152546 TRANSLATION protein_coding start/stop - 5 221.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000041297 Cdk13 ENSMUST00000222848 - NO_TRANSLATION retained_intron ENSMUSG00000041297 Cdk13 ENSMUST00000222800 ENSMUSP00000152539 TRANSLATION protein_coding - - 1 837.0 17.0 7.85 0.0 249.0 0.0 -4,-5 0.0903 14 12.0 MINOR ENSMUSG00000071909 Nutm2 ENSMUST00000096633 ENSMUSP00000094390 TRANSLATION protein_coding - CCDS26507.1 1 733.0 0.0 2.0 0.0 910.0 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000110086 Smim32 ENSMUST00000210744 ENSMUSP00000147916 TRANSLATION protein_coding - - - 103.0 0.0 0.0 5.3 0.0 0.0 -4,-7 0.7009 - 2.0 PRINCIPAL:1 ENSMUSG00000058258 Idi1 ENSMUST00000177447 ENSMUSP00000135861 TRANSLATION protein_coding - - 5 134.0 14.0 3.3 0.0 43.9 0.0 -4,-5 0.0 4 8.904 MINOR ENSMUSG00000058258 Idi1 ENSMUST00000177397 ENSMUSP00000135349 TRANSLATION protein_coding - - 3 134.0 14.0 3.3 0.0 43.9 0.0 -4,-5 0.0 4 8.904 MINOR ENSMUSG00000058258 Idi1 ENSMUST00000177400 ENSMUSP00000135770 TRANSLATION protein_coding - - 5 151.0 15.0 3.75 0.0 47.4 0.0 -4,-5 0.0004 5 10.728 MINOR ENSMUSG00000058258 Idi1 ENSMUST00000169314 ENSMUSP00000132780 TRANSLATION protein_coding - CCDS26233.2 1 283.0 19.0 4.75 0.1 83.9 0.0 -4,-2 0.1826 10 18.0 MINOR ENSMUSG00000058258 Idi1 ENSMUST00000176851 - NO_TRANSLATION retained_intron ENSMUSG00000058258 Idi1 ENSMUST00000240539 ENSMUSP00000159471 TRANSLATION protein_coding - - - 227.0 19.0 4.75 24.7 83.9 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000054728 Phactr1 ENSMUST00000137434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054728 Phactr1 ENSMUST00000132050 - NO_TRANSLATION retained_intron ENSMUSG00000054728 Phactr1 ENSMUST00000136576 ENSMUSP00000158985 TRANSLATION protein_coding - - 1 128.0 0.0 3.0 0.0 68.9 0.0 -4,-2 0.0 2 3.302 MINOR ENSMUSG00000054728 Phactr1 ENSMUST00000149235 ENSMUSP00000115207 TRANSLATION protein_coding - CCDS79181.1 5 580.0 0.0 4.75 8.6 126.5 0.0 -4,-5 1.0 11 11.0 PRINCIPAL:3 ENSMUSG00000054728 Phactr1 ENSMUST00000128646 ENSMUSP00000122232 TRANSLATION protein_coding - CCDS79181.1 1 580.0 0.0 4.75 8.6 126.5 0.0 -4,-5 1.0 11 11.0 PRINCIPAL:3 ENSMUSG00000054728 Phactr1 ENSMUST00000138640 ENSMUSP00000158964 TRANSLATION nonsense_mediated_decay - - 5 124.0 0.0 3.0 0.0 68.9 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000054728 Phactr1 ENSMUST00000161201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054728 Phactr1 ENSMUST00000123987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054728 Phactr1 ENSMUST00000136951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054728 Phactr1 ENSMUST00000239286 ENSMUSP00000159214 TRANSLATION protein_coding stop - - 205.0 2.0 0.75 0.0 35.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054728 Phactr1 ENSMUST00000066928 ENSMUSP00000066663 TRANSLATION protein_coding - - 1 573.0 0.0 4.75 0.0 126.5 0.0 -2,0 0.1435 9 8.0 MINOR ENSMUSG00000054728 Phactr1 ENSMUST00000127859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054728 Phactr1 ENSMUST00000148891 ENSMUSP00000115228 TRANSLATION protein_coding - CCDS49251.1 1 642.0 0.0 4.75 0.0 126.5 0.0 -2,0 0.2336 10 8.0 MINOR ENSMUSG00000054728 Phactr1 ENSMUST00000131942 ENSMUSP00000123346 TRANSLATION protein_coding - CCDS79182.1 1 557.0 0.0 4.75 7.8 126.5 0.0 -4,-7 0.868 7 10.685 ALTERNATIVE:1 ENSMUSG00000054728 Phactr1 ENSMUST00000150620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054728 Phactr1 ENSMUST00000140651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054728 Phactr1 ENSMUST00000110161 ENSMUSP00000105790 TRANSLATION protein_coding - - 5 649.0 0.0 4.75 7.9 126.5 0.0 -4,-5 0.742 12 10.724 ALTERNATIVE:1 ENSMUSG00000015533 Itga2 ENSMUST00000056117 ENSMUSP00000053891 TRANSLATION protein_coding - CCDS26787.1 1 1178.0 13.0 12.582 7.9 357.8 0.0 4,-1 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000015533 Itga2 ENSMUST00000224204 ENSMUSP00000153056 TRANSLATION protein_coding stop - - 154.0 0.0 2.31 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021377 Dek ENSMUST00000224150 ENSMUSP00000153538 TRANSLATION nonsense_mediated_decay start - - 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021377 Dek ENSMUST00000138401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021377 Dek ENSMUST00000021807 ENSMUSP00000021807 TRANSLATION protein_coding - CCDS26490.1 1 380.0 0.0 4.75 9.6 63.2 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000021377 Dek ENSMUST00000135278 ENSMUSP00000121663 TRANSLATION protein_coding stop - 1 202.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000021377 Dek ENSMUST00000143933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021377 Dek ENSMUST00000129352 ENSMUSP00000114392 TRANSLATION protein_coding stop - 2 258.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000021377 Dek ENSMUST00000150652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021359 Tfap2a ENSMUST00000021787 ENSMUSP00000021787 TRANSLATION protein_coding - CCDS49243.1 1 431.0 0.0 4.0 22.8 289.5 0.0 -4,-7 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000021359 Tfap2a ENSMUST00000110193 ENSMUSP00000105822 TRANSLATION protein_coding - CCDS26467.1 1 437.0 0.0 4.0 22.0 289.5 0.0 -4,-5 0.9859 2 11.852 ALTERNATIVE:1 ENSMUSG00000021359 Tfap2a ENSMUST00000224999 ENSMUSP00000153522 TRANSLATION protein_coding - - - 439.0 0.0 4.0 22.0 289.5 0.0 -4,-5 0.833 2 11.852 ALTERNATIVE:1 ENSMUSG00000021359 Tfap2a ENSMUST00000223869 ENSMUSP00000153149 TRANSLATION protein_coding - - - 433.0 0.0 4.0 21.2 289.5 0.0 -4,-5 0.8409 2 11.708 ALTERNATIVE:1 ENSMUSG00000021359 Tfap2a ENSMUST00000224665 ENSMUSP00000153667 TRANSLATION protein_coding - - - 439.0 0.0 4.0 22.0 289.5 0.0 -4,-5 0.833 2 11.852 ALTERNATIVE:1 ENSMUSG00000021359 Tfap2a ENSMUST00000224319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021359 Tfap2a ENSMUST00000223908 - NO_TRANSLATION retained_intron ENSMUSG00000021359 Tfap2a ENSMUST00000225180 ENSMUSP00000153271 TRANSLATION protein_coding - - - 466.0 0.0 4.0 0.0 289.5 0.0 -4,-6 0.0323 2 8.0 MINOR ENSMUSG00000021359 Tfap2a ENSMUST00000224700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055228 Gm49359 ENSMUST00000076195 ENSMUSP00000075552 TRANSLATION protein_coding,RT - - 1 150.0 0.0 1.8 0.0 78.3 0.0 -4,-5 0.7459 - -2.0 PRINCIPAL:1 ENSMUSG00000046957 Spz1 ENSMUST00000050658 ENSMUSP00000054083 TRANSLATION protein_coding - CCDS26683.1 - 378.0 0.0 0.0 0.3 0.0 0.0 -4,-5 0.8888 - 0.0 PRINCIPAL:1 ENSMUSG00000021520 Uqcrb ENSMUST00000021993 ENSMUSP00000021993 TRANSLATION protein_coding - CCDS26610.1 1 111.0 0.0 2.83 29.2 138.9 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000021520 Uqcrb ENSMUST00000174606 - NO_TRANSLATION retained_intron ENSMUSG00000049538 Adamts16 ENSMUST00000080145 ENSMUSP00000079041 TRANSLATION protein_coding - CCDS36723.1 1 1222.0 20.0 7.695 0.1 522.7 0.0 0,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000049538 Adamts16 ENSMUST00000130726 - NO_TRANSLATION retained_intron ENSMUSG00000049538 Adamts16 ENSMUST00000109694 ENSMUSP00000105316 TRANSLATION protein_coding - - 1 900.0 17.0 7.695 0.0 394.1 0.0 0,-3 0.0824 - 10.002 MINOR ENSMUSG00000049538 Adamts16 ENSMUST00000123552 ENSMUSP00000122031 TRANSLATION nonsense_mediated_decay - - 5 684.0 17.0 5.695 0.0 273.1 0.0 0,-3 0.0008 - -2.0 MINOR ENSMUSG00000048368 Omd ENSMUST00000065494 ENSMUSP00000065706 TRANSLATION protein_coding - CCDS26504.1 1 423.0 0.0 2.0 4.5 121.6 0.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000048368 Omd ENSMUST00000221170 ENSMUSP00000152066 TRANSLATION protein_coding - CCDS26504.1 1 423.0 0.0 2.0 4.5 121.6 0.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000069805 Fbp1 ENSMUST00000134814 ENSMUSP00000115703 TRANSLATION nonsense_mediated_decay - - 5 57.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0028 2 -2.0 MINOR ENSMUSG00000069805 Fbp1 ENSMUST00000092888 ENSMUSP00000090564 TRANSLATION protein_coding - CCDS26590.1 1 338.0 21.0 7.08 36.9 0.0 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000069805 Fbp1 ENSMUST00000150013 ENSMUSP00000117146 TRANSLATION protein_coding start - 5 133.0 7.0 2.75 0.0 0.0 0.0 -4,-5 0.0021 6 -2.0 MINOR ENSMUSG00000049902 4921517D22Rik ENSMUST00000061597 ENSMUSP00000061773 TRANSLATION protein_coding - CCDS36688.1 1 269.0 0.0 0.0 0.1 0.0 0.0 -4,-1 0.8974 - 0.0 PRINCIPAL:1 ENSMUSG00000049902 4921517D22Rik ENSMUST00000225373 ENSMUSP00000153380 TRANSLATION nonsense_mediated_decay - - - 125.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0405 - -2.0 MINOR ENSMUSG00000021148 Idi2l ENSMUST00000021573 ENSMUSP00000021573 TRANSLATION protein_coding - - 5 227.0 13.0 4.0 22.6 63.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000021148 Idi2l ENSMUST00000187196 ENSMUSP00000139705 TRANSLATION protein_coding - - 1 227.0 13.0 4.0 22.6 63.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000049737 Or2w6 ENSMUST00000055615 ENSMUSP00000062356 TRANSLATION protein_coding - CCDS26284.1 - 317.0 0.0 1.0 5.3 174.9 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049737 Or2w6 ENSMUST00000214321 ENSMUSP00000150315 TRANSLATION protein_coding - CCDS26284.1 5 317.0 0.0 1.0 5.3 174.9 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000022886 Prl2a1 ENSMUST00000023602 ENSMUSP00000023602 TRANSLATION protein_coding - CCDS26407.1 1 228.0 0.0 2.7 0.4 218.0 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000052087 Rgs14 ENSMUST00000063771 ENSMUSP00000068731 TRANSLATION protein_coding - CCDS36674.1 1 547.0 0.0 8.05 0.4 233.9 0.0 -4,-6 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000052087 Rgs14 ENSMUST00000135851 - NO_TRANSLATION retained_intron ENSMUSG00000052087 Rgs14 ENSMUST00000149858 ENSMUSP00000121508 TRANSLATION nonsense_mediated_decay - - 3 82.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000052087 Rgs14 ENSMUST00000224185 - NO_TRANSLATION retained_intron ENSMUSG00000021396 Nxnl2 ENSMUST00000021828 ENSMUSP00000021828 TRANSLATION protein_coding - CCDS26511.1 1 156.0 0.0 2.0 33.0 96.2 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021396 Nxnl2 ENSMUST00000221339 - NO_TRANSLATION retained_intron ENSMUSG00000021417 Eci2 ENSMUST00000171258 ENSMUSP00000129164 TRANSLATION protein_coding stop - 5 170.0 16.0 4.35 0.0 151.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021417 Eci2 ENSMUST00000220713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021417 Eci2 ENSMUST00000170989 ENSMUSP00000129477 TRANSLATION protein_coding stop - 5 202.0 18.0 5.18 0.0 153.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021417 Eci2 ENSMUST00000163280 ENSMUSP00000126500 TRANSLATION protein_coding stop - 3 216.0 20.0 5.68 0.0 165.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021417 Eci2 ENSMUST00000164421 - NO_TRANSLATION retained_intron ENSMUSG00000021417 Eci2 ENSMUST00000166109 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021417 Eci2 ENSMUST00000178421 ENSMUSP00000137411 TRANSLATION protein_coding - CCDS26450.1 1 358.0 25.0 9.18 4.4 245.6 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:4 ENSMUSG00000021417 Eci2 ENSMUST00000110251 ENSMUSP00000105880 TRANSLATION protein_coding - - 1 378.0 25.0 9.18 0.0 245.6 0.0 -4,-2 0.0834 9 14.0 MINOR ENSMUSG00000021417 Eci2 ENSMUST00000167036 ENSMUSP00000130076 TRANSLATION protein_coding stop - 5 199.0 18.0 5.18 0.0 153.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021417 Eci2 ENSMUST00000021854 ENSMUSP00000021854 TRANSLATION protein_coding - CCDS26450.1 1 358.0 25.0 9.18 4.4 245.6 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:4 ENSMUSG00000021417 Eci2 ENSMUST00000171229 ENSMUSP00000131735 TRANSLATION protein_coding - CCDS49234.1 1 391.0 25.0 9.18 3.5 245.6 0.0 -4,0 0.8063 9 15.47 ALTERNATIVE:2 ENSMUSG00000021417 Eci2 ENSMUST00000170538 ENSMUSP00000129428 TRANSLATION protein_coding stop - 3 229.0 22.0 6.18 0.0 168.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021417 Eci2 ENSMUST00000169759 ENSMUSP00000130283 TRANSLATION protein_coding stop - 2 119.0 8.0 2.8 0.0 107.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021417 Eci2 ENSMUST00000084345 - NO_TRANSLATION retained_intron ENSMUSG00000021373 Cap2 ENSMUST00000225824 ENSMUSP00000153125 TRANSLATION protein_coding - - - 421.0 0.0 8.03 1.0 567.1 0.0 -4,-5 0.0393 15 9.21 MINOR ENSMUSG00000021373 Cap2 ENSMUST00000119341 ENSMUSP00000112952 TRANSLATION protein_coding - - 1 364.0 0.0 5.68 1.0 368.2 0.0 -4,-5 0.006 13 0.498 MINOR ENSMUSG00000021373 Cap2 ENSMUST00000225444 - NO_TRANSLATION retained_intron ENSMUSG00000021373 Cap2 ENSMUST00000126687 ENSMUSP00000153072 TRANSLATION nonsense_mediated_decay start - 3 28.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021373 Cap2 ENSMUST00000021802 ENSMUSP00000021802 TRANSLATION protein_coding - CCDS26484.1 1 476.0 0.0 8.43 11.4 600.3 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000033715 Akr1c14 ENSMUST00000147180 ENSMUSP00000152562 TRANSLATION nonsense_mediated_decay start - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033715 Akr1c14 ENSMUST00000118717 ENSMUSP00000112664 TRANSLATION protein_coding - CCDS26218.1 5 323.0 48.0 8.0 8.7 165.8 0.0 -4,-6 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000033715 Akr1c14 ENSMUST00000041768 ENSMUSP00000045394 TRANSLATION protein_coding - CCDS26218.1 1 323.0 48.0 8.0 8.7 165.8 0.0 -4,-6 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000058569 Tmed9 ENSMUST00000225888 - NO_TRANSLATION retained_intron ENSMUSG00000058569 Tmed9 ENSMUST00000225723 - NO_TRANSLATION retained_intron ENSMUSG00000058569 Tmed9 ENSMUST00000224741 ENSMUSP00000153554 TRANSLATION protein_coding - - - 209.0 0.0 3.6 0.0 156.1 1.0 -4,-7 0.0003 7 9.072 MINOR ENSMUSG00000058569 Tmed9 ENSMUST00000224634 - NO_TRANSLATION retained_intron ENSMUSG00000058569 Tmed9 ENSMUST00000109905 ENSMUSP00000105531 TRANSLATION protein_coding - CCDS49277.1 1 235.0 0.0 4.2 9.4 184.9 1.0 3,2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000025877 Hk3 ENSMUST00000153665 ENSMUSP00000115227 TRANSLATION protein_coding - CCDS56883.1 1 867.0 40.0 18.16 0.7 907.7 0.0 -4,-6 0.1819 19 15.3 MINOR ENSMUSG00000025877 Hk3 ENSMUST00000126234 ENSMUSP00000123233 TRANSLATION protein_coding - CCDS26538.1 1 922.0 40.0 18.91 5.9 927.7 0.0 -4,-5 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000025877 Hk3 ENSMUST00000123097 ENSMUSP00000116717 TRANSLATION protein_coding - CCDS56884.1 1 877.0 40.0 17.91 0.0 897.7 0.0 -4,-5 0.1186 19 14.202 MINOR ENSMUSG00000025877 Hk3 ENSMUST00000052949 ENSMUSP00000051215 TRANSLATION protein_coding - CCDS26538.1 1 922.0 40.0 18.91 5.9 927.7 0.0 -4,-5 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000025877 Hk3 ENSMUST00000132309 ENSMUSP00000117254 TRANSLATION nonsense_mediated_decay - - 1 167.0 0.0 3.594 0.0 95.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025877 Hk3 ENSMUST00000135983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025877 Hk3 ENSMUST00000148221 ENSMUSP00000119357 TRANSLATION protein_coding stop - 2 65.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025877 Hk3 ENSMUST00000149644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021608 Lpcat1 ENSMUST00000022099 ENSMUSP00000022099 TRANSLATION protein_coding - CCDS36726.1 1 534.0 10.0 11.2 5.7 102.7 0.0 -3,1 0.7433 7 15.317 ALTERNATIVE:1 ENSMUSG00000021608 Lpcat1 ENSMUST00000140431 - NO_TRANSLATION retained_intron ENSMUSG00000021608 Lpcat1 ENSMUST00000133791 - NO_TRANSLATION retained_intron ENSMUSG00000021608 Lpcat1 ENSMUST00000147566 ENSMUSP00000117238 TRANSLATION nonsense_mediated_decay - - 1 46.0 0.0 0.4 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021608 Lpcat1 ENSMUST00000222881 - NO_TRANSLATION retained_intron ENSMUSG00000021608 Lpcat1 ENSMUST00000123766 ENSMUSP00000117965 TRANSLATION nonsense_mediated_decay - - 5 77.0 0.0 0.4 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021608 Lpcat1 ENSMUST00000223060 ENSMUSP00000152190 TRANSLATION protein_coding - - 1 486.0 10.0 10.8 11.7 102.7 0.0 3,-2 1.0 7 16.202 PRINCIPAL:2 ENSMUSG00000021608 Lpcat1 ENSMUST00000124627 - NO_TRANSLATION retained_intron ENSMUSG00000095432 Zfp748 ENSMUST00000181892 ENSMUSP00000137928 TRANSLATION protein_coding - CCDS59589.1 1 888.0 104.0 0.6 0.1 503.4 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000095432 Zfp748 ENSMUST00000053289 - NO_TRANSLATION retained_intron ENSMUSG00000069273 H3c6 ENSMUST00000105107 ENSMUSP00000100739 TRANSLATION protein_coding - CCDS26347.1 - 136.0 0.0 1.0 31.8 181.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000032745 Gpbp1 ENSMUST00000143331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032745 Gpbp1 ENSMUST00000129638 - NO_TRANSLATION retained_intron ENSMUSG00000032745 Gpbp1 ENSMUST00000047627 ENSMUSP00000048240 TRANSLATION protein_coding - CCDS26769.1 1 493.0 0.0 0.0 0.1 143.7 0.0 -4,-5 1.0 5 2.0 PRINCIPAL:2 ENSMUSG00000032745 Gpbp1 ENSMUST00000136471 ENSMUSP00000123249 TRANSLATION nonsense_mediated_decay - - 5 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032745 Gpbp1 ENSMUST00000091236 ENSMUSP00000088777 TRANSLATION protein_coding - CCDS49362.1 1 473.0 0.0 0.0 0.1 143.7 0.0 -4,-5 0.3072 4 2.0 ALTERNATIVE:2 ENSMUSG00000032745 Gpbp1 ENSMUST00000156221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052180 Serpinb6c ENSMUST00000172184 ENSMUSP00000127619 TRANSLATION protein_coding - CCDS49227.1 1 379.0 0.0 5.24 9.9 430.8 1.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000052180 Serpinb6c ENSMUST00000222216 ENSMUSP00000152676 TRANSLATION protein_coding stop - 2 194.0 0.0 3.44 0.0 212.5 1.0 -4,-7 0.0015 2 -2.0 MINOR ENSMUSG00000052180 Serpinb6c ENSMUST00000110273 ENSMUSP00000105902 TRANSLATION protein_coding - CCDS49227.1 5 379.0 0.0 5.24 9.9 430.8 1.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000116207 Nnt ENSMUST00000223268 ENSMUSP00000152868 TRANSLATION protein_coding - CCDS84067.1 1 835.0 45.0 14.3 0.0 867.2 0.0 -3,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000021156 Zmynd11 ENSMUST00000222927 - NO_TRANSLATION retained_intron ENSMUSG00000021156 Zmynd11 ENSMUST00000140180 ENSMUSP00000152332 TRANSLATION nonsense_mediated_decay start - 5 155.0 8.0 1.074 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000110636 ENSMUSP00000106266 TRANSLATION protein_coding - CCDS56870.1 1 602.0 15.0 10.034 20.5 83.5 0.0 -4,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000021156 Zmynd11 ENSMUST00000222038 - NO_TRANSLATION retained_intron ENSMUSG00000021156 Zmynd11 ENSMUST00000157035 ENSMUSP00000152861 TRANSLATION nonsense_mediated_decay - - 5 51.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000110635 ENSMUSP00000106265 TRANSLATION protein_coding - - 5 571.0 15.0 9.234 2.0 69.1 0.0 -4,-2 0.0602 7 15.57 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000222475 ENSMUSP00000152716 TRANSLATION protein_coding stop - 5 516.0 7.0 8.16 2.0 69.1 0.0 -4,-2 0.0403 6 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000110638 ENSMUSP00000106268 TRANSLATION protein_coding - CCDS84007.1 5 604.0 8.0 8.96 0.4 83.5 0.0 -4,-2 0.2322 7 11.184 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000222148 - NO_TRANSLATION retained_intron ENSMUSG00000021156 Zmynd11 ENSMUST00000110637 ENSMUSP00000106267 TRANSLATION protein_coding - CCDS36590.1 5 548.0 8.0 8.96 19.0 83.5 0.0 -4,-2 0.8595 7 14.876 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000154994 ENSMUSP00000116635 TRANSLATION protein_coding stop - 5 249.0 8.0 4.204 0.0 42.5 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000144642 ENSMUSP00000117375 TRANSLATION protein_coding stop - 3 162.0 8.0 1.574 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000110634 ENSMUSP00000106264 TRANSLATION protein_coding - CCDS56870.1 5 602.0 15.0 10.034 20.5 83.5 0.0 -4,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000021156 Zmynd11 ENSMUST00000220996 ENSMUSP00000152774 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000152725 ENSMUSP00000118002 TRANSLATION protein_coding stop - 2 203.0 8.0 2.704 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000128658 ENSMUSP00000121574 TRANSLATION protein_coding stop - 3 149.0 0.0 1.63 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000137813 - NO_TRANSLATION retained_intron ENSMUSG00000021156 Zmynd11 ENSMUST00000146039 ENSMUSP00000116299 TRANSLATION protein_coding stop - 3 96.0 6.0 1.05 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000146059 ENSMUSP00000122133 TRANSLATION protein_coding stop - 5 89.0 0.0 1.028 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000062658 ENSMUSP00000059767 TRANSLATION protein_coding - CCDS36590.1 1 548.0 8.0 8.96 19.0 83.5 0.0 -4,-2 0.8595 7 14.876 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000110633 ENSMUSP00000106263 TRANSLATION protein_coding - - 5 618.0 15.0 10.034 0.0 83.5 0.0 -4,-7 0.07 8 18.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000222358 ENSMUSP00000152106 TRANSLATION protein_coding - - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000223421 ENSMUSP00000152352 TRANSLATION protein_coding stop - 5 472.0 8.0 7.284 0.0 77.6 0.0 -4,-2 0.0149 7 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000130151 ENSMUSP00000118964 TRANSLATION protein_coding stop - 5 286.0 8.0 4.954 0.0 42.5 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000021156 Zmynd11 ENSMUST00000137932 - NO_TRANSLATION retained_intron ENSMUSG00000021156 Zmynd11 ENSMUST00000138039 - NO_TRANSLATION retained_intron ENSMUSG00000047094 Ofcc1 ENSMUST00000224909 ENSMUSP00000153016 TRANSLATION nonsense_mediated_decay - - - 186.0 0.0 0.0 0.0 184.6 0.0 -4,-5 0.0483 - -2.0 MINOR ENSMUSG00000047094 Ofcc1 ENSMUST00000054635 ENSMUSP00000062217 TRANSLATION protein_coding - CCDS49241.1 1 926.0 0.0 0.0 0.0 184.6 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047094 Ofcc1 ENSMUST00000224813 ENSMUSP00000153579 TRANSLATION protein_coding - - - 166.0 0.0 0.0 0.0 138.8 0.0 -4,-5 0.0 - 3.252 MINOR ENSMUSG00000005891 Prl4a1 ENSMUST00000021779 ENSMUSP00000021779 TRANSLATION protein_coding - CCDS26409.1 1 227.0 0.0 3.8 0.4 232.8 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059288 Cdyl ENSMUST00000225602 ENSMUSP00000153274 TRANSLATION nonsense_mediated_decay - - - 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059288 Cdyl ENSMUST00000163595 ENSMUSP00000131784 TRANSLATION protein_coding - CCDS49236.1 1 544.0 0.0 5.33 19.5 179.5 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000059288 Cdyl ENSMUST00000226071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059288 Cdyl ENSMUST00000075220 ENSMUSP00000074707 TRANSLATION protein_coding - CCDS49235.1 1 593.0 0.0 5.0 1.0 178.3 0.0 -4,-5 0.1544 8 11.268 MINOR ENSMUSG00000051098 Mblac2 ENSMUST00000224299 ENSMUSP00000152971 TRANSLATION protein_coding start - - 99.0 4.0 1.0 0.0 35.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000051098 Mblac2 ENSMUST00000057598 ENSMUSP00000051644 TRANSLATION protein_coding - CCDS26662.1 1 279.0 7.0 3.0 26.8 73.0 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000025878 Uimc1 ENSMUST00000127195 ENSMUSP00000122196 TRANSLATION protein_coding - - 5 727.0 8.0 1.8 0.4 0.0 0.0 -4,-5 0.6161 12 11.682 ALTERNATIVE:2 ENSMUSG00000025878 Uimc1 ENSMUST00000026997 ENSMUSP00000026997 TRANSLATION protein_coding - CCDS36671.1 1 727.0 8.0 1.9 0.4 0.0 0.0 -4,-5 0.9991 13 12.0 PRINCIPAL:2 ENSMUSG00000025878 Uimc1 ENSMUST00000128641 - NO_TRANSLATION retained_intron ENSMUSG00000025878 Uimc1 ENSMUST00000133187 - NO_TRANSLATION retained_intron ENSMUSG00000025878 Uimc1 ENSMUST00000124561 - NO_TRANSLATION retained_intron ENSMUSG00000025878 Uimc1 ENSMUST00000148702 ENSMUSP00000120935 TRANSLATION nonsense_mediated_decay - - 5 406.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0272 2 -2.0 MINOR ENSMUSG00000025878 Uimc1 ENSMUST00000099496 ENSMUSP00000097095 TRANSLATION protein_coding - CCDS79189.1 1 446.0 8.0 1.0 0.3 0.0 0.0 -4,-5 0.1504 11 9.156 MINOR ENSMUSG00000046351 Zfp322a ENSMUST00000050101 ENSMUSP00000061524 TRANSLATION protein_coding - CCDS26337.1 1 410.0 38.0 2.6 0.0 166.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000046351 Zfp322a ENSMUST00000223795 - NO_TRANSLATION retained_intron ENSMUSG00000046351 Zfp322a ENSMUST00000145451 ENSMUSP00000119883 TRANSLATION protein_coding stop - 2 179.0 14.0 1.6 0.0 55.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000046351 Zfp322a ENSMUST00000224779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046351 Zfp322a ENSMUST00000152557 ENSMUSP00000118754 TRANSLATION protein_coding stop - 2 180.0 14.0 1.6 0.0 55.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000046351 Zfp322a ENSMUST00000125328 ENSMUSP00000120804 TRANSLATION protein_coding stop - 2 126.0 6.0 0.6 0.0 28.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000069258 Prl2b1 ENSMUST00000102954 ENSMUSP00000100019 TRANSLATION protein_coding - CCDS26397.1 1 228.0 0.0 3.8 0.4 187.5 0.0 1,-3 0.5478 - 7.004 ALTERNATIVE:2 ENSMUSG00000069258 Prl2b1 ENSMUST00000091678 ENSMUSP00000089267 TRANSLATION protein_coding - - 1 235.0 0.0 3.965 0.1 184.7 0.0 1,-3 0.5723 - 8.0 PRINCIPAL:4 ENSMUSG00000021646 Mccc2 ENSMUST00000222083 ENSMUSP00000152781 TRANSLATION protein_coding start - 1 276.0 0.0 7.5 0.0 248.5 0.0 -4,-5 0.0 16 -2.0 MINOR ENSMUSG00000021646 Mccc2 ENSMUST00000221846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021646 Mccc2 ENSMUST00000022148 ENSMUSP00000022148 TRANSLATION protein_coding - CCDS36764.1 1 563.0 2.0 14.93 11.4 512.0 0.0 -3,0 1.0 26 17.0 PRINCIPAL:1 ENSMUSG00000021646 Mccc2 ENSMUST00000223013 - NO_TRANSLATION retained_intron ENSMUSG00000021646 Mccc2 ENSMUST00000221344 ENSMUSP00000152799 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.6 0.0 0.0 0.0 -3,0 0.0004 - -2.0 MINOR ENSMUSG00000021646 Mccc2 ENSMUST00000221034 - NO_TRANSLATION retained_intron ENSMUSG00000021326 Trim27 ENSMUST00000139287 ENSMUSP00000115397 TRANSLATION nonsense_mediated_decay start - 5 61.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021326 Trim27 ENSMUST00000124794 - NO_TRANSLATION retained_intron ENSMUSG00000021326 Trim27 ENSMUST00000221464 ENSMUSP00000152230 TRANSLATION protein_coding - - 5 337.0 0.0 2.726 0.1 153.6 0.0 -4,-5 0.0035 2 4.698 MINOR ENSMUSG00000021326 Trim27 ENSMUST00000021761 ENSMUSP00000021761 TRANSLATION protein_coding - CCDS36607.1 1 513.0 16.0 3.806 8.2 239.3 0.0 -4,-6 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000021326 Trim27 ENSMUST00000124052 - NO_TRANSLATION retained_intron ENSMUSG00000021326 Trim27 ENSMUST00000222544 ENSMUSP00000152730 TRANSLATION protein_coding - CCDS36607.1 5 513.0 16.0 3.806 8.2 239.3 0.0 -4,-6 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000021326 Trim27 ENSMUST00000223065 ENSMUSP00000152179 TRANSLATION protein_coding - - 1 314.0 16.0 2.775 0.0 85.7 0.0 -4,-6 0.0007 3 9.936 MINOR ENSMUSG00000021211 Akr1c12 ENSMUST00000021632 ENSMUSP00000021632 TRANSLATION protein_coding - CCDS26222.1 1 323.0 48.0 7.75 9.9 208.0 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000032846 Zswim6 ENSMUST00000224719 - NO_TRANSLATION retained_intron ENSMUSG00000032846 Zswim6 ENSMUST00000225197 ENSMUSP00000159397 TRANSLATION protein_coding - - - 1207.0 0.0 0.0 1.4 0.0 0.0 -4,-7 0.719 - 1.0 PRINCIPAL:2 ENSMUSG00000032846 Zswim6 ENSMUST00000225822 ENSMUSP00000159396 TRANSLATION protein_coding - - - 1158.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2886 - 0.0 ALTERNATIVE:2 ENSMUSG00000051037 Zfp455 ENSMUST00000120861 ENSMUSP00000112546 TRANSLATION protein_coding - CCDS49300.1 2 461.0 47.0 1.3 0.0 294.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000051037 Zfp455 ENSMUST00000117110 ENSMUSP00000113356 TRANSLATION protein_coding - - 1 396.0 47.0 1.3 0.0 216.2 0.0 -4,-5 0.1249 - 13.284 MINOR ENSMUSG00000060024 Vmn1r213 ENSMUST00000227573 ENSMUSP00000153732 TRANSLATION protein_coding - - - 298.0 0.0 0.0 1.4 103.0 5.0 -1,-5 0.7442 - 3.0 PRINCIPAL:2 ENSMUSG00000060024 Vmn1r213 ENSMUST00000076897 ENSMUSP00000076163 TRANSLATION protein_coding - CCDS26328.1 - 384.0 0.0 0.0 0.0 103.0 5.0 -3,-5 0.2822 - 2.0 ALTERNATIVE:2 ENSMUSG00000060024 Vmn1r213 ENSMUST00000228758 ENSMUSP00000153766 TRANSLATION protein_coding - CCDS26328.1 - 384.0 0.0 0.0 0.0 103.0 5.0 -3,-5 0.2822 - 2.0 ALTERNATIVE:2 ENSMUSG00000060024 Vmn1r213 ENSMUST00000228031 ENSMUSP00000154625 TRANSLATION protein_coding - - - 298.0 0.0 0.0 1.4 103.0 5.0 -1,-5 0.7442 - 3.0 PRINCIPAL:2 ENSMUSG00000021490 Slc34a1 ENSMUST00000225538 - NO_TRANSLATION retained_intron ENSMUSG00000021490 Slc34a1 ENSMUST00000224925 ENSMUSP00000152974 TRANSLATION protein_coding start/stop - - 309.0 0.0 0.0 0.0 0.0 2.0 -4,-6 0.0034 - -2.0 MINOR ENSMUSG00000021490 Slc34a1 ENSMUST00000057167 ENSMUSP00000059138 TRANSLATION protein_coding - CCDS49271.1 1 637.0 0.0 0.0 10.0 137.9 6.0 -4,-1 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000021490 Slc34a1 ENSMUST00000225259 ENSMUSP00000153038 TRANSLATION protein_coding - CCDS49271.1 - 637.0 0.0 0.0 10.0 137.9 6.0 -4,-1 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000021490 Slc34a1 ENSMUST00000224043 - NO_TRANSLATION retained_intron ENSMUSG00000021490 Slc34a1 ENSMUST00000223954 - NO_TRANSLATION retained_intron ENSMUSG00000021760 Gpx8 ENSMUST00000022282 ENSMUSP00000022282 TRANSLATION protein_coding - CCDS26781.1 1 209.0 0.0 3.75 28.8 118.2 1.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021760 Gpx8 ENSMUST00000231962 ENSMUSP00000156385 TRANSLATION protein_coding - - - 90.0 0.0 1.0 0.0 0.0 1.0 -4,-5 0.0015 1 0.498 MINOR ENSMUSG00000055480 Zfp458 ENSMUST00000225772 ENSMUSP00000153284 TRANSLATION protein_coding - - - 749.0 83.0 3.2 0.1 377.7 0.0 -4,-7 0.8388 - 18.0 PRINCIPAL:1 ENSMUSG00000055480 Zfp458 ENSMUST00000223990 ENSMUSP00000153563 TRANSLATION protein_coding stop - - 205.0 15.0 2.4 0.0 146.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000055480 Zfp458 ENSMUST00000045969 ENSMUSP00000047222 TRANSLATION protein_coding - CCDS36710.1 1 752.0 83.0 2.2 0.0 377.7 0.0 -4,-7 0.4797 - 16.002 MINOR ENSMUSG00000055480 Zfp458 ENSMUST00000224648 - NO_TRANSLATION retained_intron ENSMUSG00000035936 Aldh5a1 ENSMUST00000037615 ENSMUSP00000040591 TRANSLATION protein_coding - CCDS26383.1 1 523.0 34.0 9.5 2.4 553.4 0.0 -4,0 1.0 19 19.0 PRINCIPAL:1 ENSMUSG00000067455 H4c11 ENSMUST00000087714 ENSMUSP00000085006 TRANSLATION protein_coding - CCDS26291.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021508 Cxcl14 ENSMUST00000021970 ENSMUSP00000021970 TRANSLATION protein_coding - CCDS36679.1 1 99.0 0.0 2.75 12.2 23.7 0.0 3,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021508 Cxcl14 ENSMUST00000224801 ENSMUSP00000153440 TRANSLATION protein_coding - - - 61.0 0.0 1.75 0.0 0.0 0.0 3,-2 0.0017 - 3.816 MINOR ENSMUSG00000052485 Tmem171 ENSMUST00000148950 ENSMUSP00000121382 TRANSLATION protein_coding stop - 2 109.0 0.0 0.0 0.0 179.6 2.0 -4,-7 0.0018 - -2.0 MINOR ENSMUSG00000052485 Tmem171 ENSMUST00000064347 ENSMUSP00000070369 TRANSLATION protein_coding - CCDS26716.1 1 322.0 0.0 0.0 3.5 546.4 4.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000035509 Fbxl21 ENSMUST00000045428 ENSMUSP00000035248 TRANSLATION protein_coding - CCDS26563.1 1 434.0 0.0 4.0 8.9 49.7 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035509 Fbxl21 ENSMUST00000128668 ENSMUSP00000115636 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035509 Fbxl21 ENSMUST00000124981 ENSMUSP00000114329 TRANSLATION nonsense_mediated_decay - - 1 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035509 Fbxl21 ENSMUST00000121871 ENSMUSP00000112518 TRANSLATION protein_coding - CCDS84026.1 1 460.0 0.0 4.0 3.3 49.7 0.0 -4,-6 0.4887 - 12.873 MINOR ENSMUSG00000035509 Fbxl21 ENSMUST00000121095 ENSMUSP00000112714 TRANSLATION protein_coding - - 1 154.0 0.0 1.33 0.0 49.7 0.0 -4,-6 0.0106 - 6.66 MINOR ENSMUSG00000021540 Smad5 ENSMUST00000136702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021540 Smad5 ENSMUST00000069557 ENSMUSP00000065798 TRANSLATION protein_coding - CCDS26565.1 1 465.0 4.0 4.0 24.9 394.1 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000021540 Smad5 ENSMUST00000109874 ENSMUSP00000105500 TRANSLATION protein_coding - CCDS26565.1 1 465.0 4.0 4.0 24.9 394.1 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000021540 Smad5 ENSMUST00000138677 - NO_TRANSLATION retained_intron ENSMUSG00000021540 Smad5 ENSMUST00000109876 ENSMUSP00000105502 TRANSLATION protein_coding - CCDS26565.1 1 465.0 4.0 4.0 24.9 394.1 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000021540 Smad5 ENSMUST00000132302 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021408 Ripk1 ENSMUST00000171137 ENSMUSP00000128511 TRANSLATION protein_coding start - 5 597.0 0.0 5.07 0.0 227.0 0.0 -4,-5 0.0006 12 -2.0 MINOR ENSMUSG00000021408 Ripk1 ENSMUST00000222176 - NO_TRANSLATION retained_intron ENSMUSG00000021408 Ripk1 ENSMUST00000021844 ENSMUSP00000021844 TRANSLATION protein_coding - CCDS26443.1 1 656.0 0.0 6.47 0.4 279.7 0.0 -4,-5 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000021408 Ripk1 ENSMUST00000163418 - NO_TRANSLATION retained_intron ENSMUSG00000021408 Ripk1 ENSMUST00000167374 ENSMUSP00000129831 TRANSLATION protein_coding - CCDS26443.1 1 656.0 0.0 6.47 0.4 279.7 0.0 -4,-5 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000098799 Trgj4 ENSMUST00000184430 ENSMUSP00000143068 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000079941 Cox5b-ps ENSMUST00000044043 ENSMUSP00000038961 TRANSLATION protein_coding - - - 129.0 4.0 1.0 31.9 131.5 0.0 -2,2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000042842 Serpinb6b ENSMUST00000017184 ENSMUSP00000017184 TRANSLATION nonsense_mediated_decay - - 1 210.0 0.0 3.79 0.0 212.7 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000042842 Serpinb6b ENSMUST00000110293 ENSMUSP00000105922 TRANSLATION protein_coding - CCDS26430.1 1 377.0 0.0 5.37 9.9 425.5 0.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000042842 Serpinb6b ENSMUST00000164541 ENSMUSP00000152419 TRANSLATION protein_coding - - 1 258.0 0.0 3.53 0.0 307.1 0.0 -4,-5 0.0 5 2.322 MINOR ENSMUSG00000042842 Serpinb6b ENSMUST00000222967 - NO_TRANSLATION retained_intron ENSMUSG00000021365 Nedd9 ENSMUST00000224083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021365 Nedd9 ENSMUST00000225053 - NO_TRANSLATION retained_intron ENSMUSG00000021365 Nedd9 ENSMUST00000225297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021365 Nedd9 ENSMUST00000163623 ENSMUSP00000125773 TRANSLATION protein_coding - CCDS36640.2 1 833.0 0.0 2.0 8.7 511.8 0.0 -4,-5 1.0 7 11.0 ALTERNATIVE:1 ENSMUSG00000021365 Nedd9 ENSMUST00000021794 ENSMUSP00000021794 TRANSLATION protein_coding - CCDS49247.1 1 833.0 0.0 2.0 8.7 511.8 0.0 -4,-5 1.0 7 11.0 PRINCIPAL:5 ENSMUSG00000021365 Nedd9 ENSMUST00000224803 ENSMUSP00000152937 TRANSLATION protein_coding stop - - 194.0 0.0 0.6 0.0 50.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021589 Rhobtb3 ENSMUST00000109606 ENSMUSP00000105235 TRANSLATION protein_coding - - 1 260.0 0.0 1.0 0.0 26.7 0.0 -4,-5 0.0 1 2.034 MINOR ENSMUSG00000021589 Rhobtb3 ENSMUST00000022078 ENSMUSP00000022078 TRANSLATION protein_coding - CCDS26652.1 1 611.0 0.0 3.88 16.6 89.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021589 Rhobtb3 ENSMUST00000220939 ENSMUSP00000152801 TRANSLATION nonsense_mediated_decay start - 3 100.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000021589 Rhobtb3 ENSMUST00000222923 ENSMUSP00000152589 TRANSLATION protein_coding start - 1 88.0 0.0 0.93 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021589 Rhobtb3 ENSMUST00000123353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000085861 Armh2 ENSMUST00000136906 ENSMUSP00000153199 TRANSLATION protein_coding - - 1 238.0 0.0 0.0 0.1 0.0 0.0 -4,-6 0.5908 - 0.0 PRINCIPAL:1 ENSMUSG00000076747 Trgv5 ENSMUST00000103556 ENSMUSP00000100337 TRANSLATION TR_V_gene start/stop - - 97.0 0.0 1.0 0.0 48.2 0.0 -4,-7 0.0624 - -2.0 ALTERNATIVE:2 ENSMUSG00000076747 Trgv5 ENSMUST00000199017 ENSMUSP00000143714 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.0 0.0 48.2 0.0 4,-1 0.8259 - -2.0 PRINCIPAL:5 ENSMUSG00000006488 Prl7a1 ENSMUST00000224852 ENSMUSP00000153047 TRANSLATION protein_coding - - - 204.0 0.0 2.9 0.0 68.2 0.0 4,-1 0.0009 - 4.2 MINOR ENSMUSG00000006488 Prl7a1 ENSMUST00000006659 ENSMUSP00000006659 TRANSLATION protein_coding - CCDS26403.1 1 265.0 0.0 3.8 0.0 126.2 0.0 4,-1 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000006488 Prl7a1 ENSMUST00000095924 ENSMUSP00000093614 TRANSLATION protein_coding - CCDS49224.1 1 266.0 0.0 3.8 0.0 126.2 0.0 4,-1 0.6627 - 6.0 ALTERNATIVE:2 ENSMUSG00000096175 Gm21761 ENSMUST00000187530 ENSMUSP00000141043 TRANSLATION protein_coding - CCDS79246.1 1 171.0 0.0 0.0 0.0 312.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096175 Gm21761 ENSMUST00000179502 ENSMUSP00000136787 TRANSLATION protein_coding - CCDS79246.1 - 171.0 0.0 0.0 0.0 312.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033765 Calm4 ENSMUST00000042219 ENSMUSP00000041636 TRANSLATION protein_coding - CCDS26215.1 - 148.0 19.0 0.8 8.8 109.0 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000008859 Rala ENSMUST00000223147 ENSMUSP00000152365 TRANSLATION protein_coding stop - 5 137.0 22.0 2.75 0.0 142.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000008859 Rala ENSMUST00000009003 ENSMUSP00000009003 TRANSLATION protein_coding - CCDS26255.1 1 206.0 25.0 4.75 36.9 188.9 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000069184 Zfp72 ENSMUST00000223163 ENSMUSP00000152502 TRANSLATION protein_coding - CCDS36732.1 5 435.0 51.0 1.4 0.0 265.6 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000069184 Zfp72 ENSMUST00000091481 ENSMUSP00000089063 TRANSLATION protein_coding - CCDS36732.1 1 435.0 51.0 1.4 0.0 265.6 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000035910 Dcdc2a ENSMUST00000160363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035910 Dcdc2a ENSMUST00000069614 ENSMUSP00000063650 TRANSLATION protein_coding - CCDS26386.2 1 475.0 0.0 2.95 6.1 127.2 0.0 -4,0 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000035910 Dcdc2a ENSMUST00000036932 ENSMUSP00000047641 TRANSLATION protein_coding - CCDS56873.1 1 368.0 0.0 2.95 0.0 127.2 0.0 -4,0 0.1967 6 12.0 MINOR ENSMUSG00000035910 Dcdc2a ENSMUST00000159129 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021477 Ctsl ENSMUST00000220737 ENSMUSP00000152551 TRANSLATION protein_coding stop - 5 163.0 2.0 4.38 0.0 120.6 0.0 4,-1 0.0 2 -2.0 MINOR ENSMUSG00000021477 Ctsl ENSMUST00000222462 ENSMUSP00000152497 TRANSLATION protein_coding stop - 5 205.0 0.0 4.88 0.0 108.7 0.0 4,-1 0.0 3 -2.0 MINOR ENSMUSG00000021477 Ctsl ENSMUST00000021933 ENSMUSP00000021933 TRANSLATION protein_coding - CCDS26600.1 1 334.0 4.0 8.88 26.7 338.3 0.0 4,-1 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000021477 Ctsl ENSMUST00000220617 - NO_TRANSLATION retained_intron ENSMUSG00000021477 Ctsl ENSMUST00000222517 ENSMUSP00000152169 TRANSLATION protein_coding - CCDS26600.1 5 334.0 4.0 8.88 26.7 338.3 0.0 4,-1 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000021477 Ctsl ENSMUST00000222971 ENSMUSP00000152819 TRANSLATION protein_coding start - 1 157.0 1.0 4.0 0.0 172.8 0.0 -4,-5 0.0003 5 -2.0 MINOR ENSMUSG00000021477 Ctsl ENSMUST00000223494 ENSMUSP00000152357 TRANSLATION nonsense_mediated_decay - - 5 94.0 0.0 1.932 0.0 48.4 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000021721 Htr1a ENSMUST00000022235 ENSMUSP00000022235 TRANSLATION protein_coding - CCDS26756.1 - 421.0 0.0 0.8 11.0 296.6 0.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000018259 Prl8a2 ENSMUST00000223918 ENSMUSP00000153595 TRANSLATION protein_coding start - - 101.0 0.0 2.0 0.0 36.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000018259 Prl8a2 ENSMUST00000018403 ENSMUSP00000018403 TRANSLATION protein_coding - CCDS26396.1 1 240.0 0.0 4.13 0.4 162.2 0.0 3,-2 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000018259 Prl8a2 ENSMUST00000110363 ENSMUSP00000105992 TRANSLATION protein_coding - CCDS70440.1 1 239.0 0.0 4.13 0.4 162.2 0.0 3,-2 0.6745 1 8.0 ALTERNATIVE:2 ENSMUSG00000021556 Golm1 ENSMUST00000224160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021556 Golm1 ENSMUST00000095739 ENSMUSP00000093410 TRANSLATION protein_coding - CCDS26576.1 1 393.0 0.0 4.5 0.0 0.0 0.0 -3,-4 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000021556 Golm1 ENSMUST00000022039 ENSMUSP00000022039 TRANSLATION protein_coding - CCDS26576.1 1 393.0 0.0 4.5 0.0 0.0 0.0 -3,-4 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000021556 Golm1 ENSMUST00000225333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069237 Fam8a1 ENSMUST00000150376 - NO_TRANSLATION retained_intron ENSMUSG00000069237 Fam8a1 ENSMUST00000099547 ENSMUSP00000097144 TRANSLATION protein_coding - CCDS26485.1 1 399.0 0.0 1.6 0.0 0.0 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000069280 Vmn1r223 ENSMUST00000238002 ENSMUSP00000158015 TRANSLATION protein_coding - CCDS36618.1 - 361.0 0.0 0.0 0.0 130.3 5.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069280 Vmn1r223 ENSMUST00000235331 ENSMUSP00000157467 TRANSLATION protein_coding - CCDS36618.1 - 361.0 0.0 0.0 0.0 130.3 5.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069280 Vmn1r223 ENSMUST00000091719 ENSMUSP00000089312 TRANSLATION protein_coding - CCDS36618.1 - 361.0 0.0 0.0 0.0 130.3 5.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069280 Vmn1r223 ENSMUST00000236495 ENSMUSP00000158339 TRANSLATION protein_coding - CCDS36618.1 - 361.0 0.0 0.0 0.0 130.3 5.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061296 Vmn1r210 ENSMUST00000226294 ENSMUSP00000153776 TRANSLATION protein_coding - CCDS26325.1 - 306.0 0.0 0.0 1.4 125.0 4.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000061296 Vmn1r210 ENSMUST00000226180 ENSMUSP00000154333 TRANSLATION protein_coding - CCDS26325.1 - 306.0 0.0 0.0 1.4 125.0 4.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000061296 Vmn1r210 ENSMUST00000072044 ENSMUSP00000071925 TRANSLATION protein_coding - CCDS26325.1 - 306.0 0.0 0.0 1.4 125.0 4.0 -2,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000062248 Cks2 ENSMUST00000075853 ENSMUSP00000075250 TRANSLATION protein_coding - CCDS36664.1 1 79.0 0.0 2.25 36.2 127.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000021470 Ercc6l2 ENSMUST00000021926 ENSMUSP00000021926 TRANSLATION protein_coding - - 1 405.0 0.0 4.764 0.0 170.7 0.0 -4,-7 0.0005 - 0.0 MINOR ENSMUSG00000021470 Ercc6l2 ENSMUST00000144763 ENSMUSP00000152142 TRANSLATION protein_coding - - 1 273.0 9.0 2.875 0.0 69.7 0.0 -4,-5 0.0 - 6.0 MINOR ENSMUSG00000021470 Ercc6l2 ENSMUST00000143449 - NO_TRANSLATION retained_intron ENSMUSG00000021470 Ercc6l2 ENSMUST00000095724 ENSMUSP00000093392 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000021470 Ercc6l2 ENSMUST00000109776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021470 Ercc6l2 ENSMUST00000222300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021470 Ercc6l2 ENSMUST00000159957 ENSMUSP00000124912 TRANSLATION nonsense_mediated_decay - - 5 205.0 9.0 2.573 0.0 34.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021470 Ercc6l2 ENSMUST00000162086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021470 Ercc6l2 ENSMUST00000238465 ENSMUSP00000158755 TRANSLATION protein_coding - - - 1537.0 9.0 8.939 0.1 257.1 0.0 -4,-5 0.3456 1 14.0 ALTERNATIVE:2 ENSMUSG00000021470 Ercc6l2 ENSMUST00000021925 ENSMUSP00000021925 TRANSLATION protein_coding stop - 5 589.0 9.0 7.339 0.0 231.8 0.0 -4,-5 0.0028 - -2.0 MINOR ENSMUSG00000021470 Ercc6l2 ENSMUST00000142827 ENSMUSP00000115796 TRANSLATION nonsense_mediated_decay start - 3 152.0 8.0 2.075 0.0 71.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021470 Ercc6l2 ENSMUST00000222855 - NO_TRANSLATION retained_intron ENSMUSG00000021470 Ercc6l2 ENSMUST00000067821 ENSMUSP00000069488 TRANSLATION protein_coding - CCDS36701.1 5 699.0 9.0 8.939 3.0 257.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:2 ENSMUSG00000034152 Exoc3 ENSMUST00000220679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034152 Exoc3 ENSMUST00000220548 - NO_TRANSLATION retained_intron ENSMUSG00000034152 Exoc3 ENSMUST00000222248 - NO_TRANSLATION retained_intron ENSMUSG00000034152 Exoc3 ENSMUST00000223045 ENSMUSP00000152217 TRANSLATION protein_coding stop - 3 106.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000034152 Exoc3 ENSMUST00000035934 ENSMUSP00000039416 TRANSLATION protein_coding - CCDS26640.1 1 755.0 0.0 11.08 0.1 536.6 0.0 -4,-5 1.0 25 12.0 PRINCIPAL:1 ENSMUSG00000034152 Exoc3 ENSMUST00000222213 ENSMUSP00000152783 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021495 Fam193b ENSMUST00000224572 - NO_TRANSLATION retained_intron ENSMUSG00000021495 Fam193b ENSMUST00000224275 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021495 Fam193b ENSMUST00000225240 ENSMUSP00000153687 TRANSLATION protein_coding - - - 812.0 0.0 0.0 0.0 98.4 0.0 -4,-2 0.1665 11 2.0 ALTERNATIVE:2 ENSMUSG00000021495 Fam193b ENSMUST00000224486 - NO_TRANSLATION retained_intron ENSMUSG00000021495 Fam193b ENSMUST00000224249 ENSMUSP00000153620 TRANSLATION protein_coding start/stop - - 242.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 5 -2.0 MINOR ENSMUSG00000021495 Fam193b ENSMUST00000225703 - NO_TRANSLATION retained_intron ENSMUSG00000021495 Fam193b ENSMUST00000225262 - NO_TRANSLATION retained_intron ENSMUSG00000021495 Fam193b ENSMUST00000021957 ENSMUSP00000021957 TRANSLATION protein_coding - CCDS36678.1 1 778.0 0.0 0.0 0.4 98.4 0.0 -4,-7 1.0 11 2.0 PRINCIPAL:2 ENSMUSG00000099611 Vmn1r189 ENSMUST00000228428 ENSMUSP00000154722 TRANSLATION protein_coding - CCDS26310.1 - 312.0 0.0 0.0 1.4 115.3 4.0 0,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000099611 Vmn1r189 ENSMUST00000227357 ENSMUSP00000153757 TRANSLATION protein_coding - CCDS26310.1 - 312.0 0.0 0.0 1.4 115.3 4.0 0,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000099611 Vmn1r189 ENSMUST00000186062 ENSMUSP00000140924 TRANSLATION protein_coding - CCDS26310.1 - 312.0 0.0 0.0 1.4 115.3 4.0 0,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000074634 Tmem267 ENSMUST00000223912 ENSMUSP00000153654 TRANSLATION protein_coding - - - 238.0 0.0 2.0 0.1 0.0 2.0 3,-2 0.6495 - 6.0 PRINCIPAL:1 ENSMUSG00000074634 Tmem267 ENSMUST00000176171 ENSMUSP00000135685 TRANSLATION protein_coding - CCDS56899.1 2 238.0 0.0 2.0 0.1 0.0 2.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074634 Tmem267 ENSMUST00000177361 - NO_TRANSLATION retained_intron ENSMUSG00000074634 Tmem267 ENSMUST00000099147 ENSMUSP00000096751 TRANSLATION protein_coding - CCDS56899.1 5 238.0 0.0 2.0 0.1 0.0 2.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000074634 Tmem267 ENSMUST00000178948 ENSMUSP00000137012 TRANSLATION protein_coding - - 1 238.0 0.0 2.0 0.1 0.0 2.0 3,-2 0.6495 - 6.0 PRINCIPAL:1 ENSMUSG00000069296 Vmn1r195 ENSMUST00000228711 ENSMUSP00000154274 TRANSLATION protein_coding - CCDS26314.1 - 316.0 0.0 0.0 0.0 135.4 5.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069296 Vmn1r195 ENSMUST00000091736 ENSMUSP00000089330 TRANSLATION protein_coding - CCDS26314.1 - 316.0 0.0 0.0 0.0 135.4 5.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000021476 Habp4 ENSMUST00000223328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021476 Habp4 ENSMUST00000221904 ENSMUSP00000152612 TRANSLATION nonsense_mediated_decay - - 1 342.0 0.0 0.0 0.0 249.7 0.0 -3,-4 0.0496 13 -2.0 MINOR ENSMUSG00000021476 Habp4 ENSMUST00000221264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021476 Habp4 ENSMUST00000021929 ENSMUSP00000021929 TRANSLATION protein_coding - CCDS36702.1 1 412.0 0.0 0.0 4.8 249.7 0.0 -3,-4 1.0 15 8.0 PRINCIPAL:1 ENSMUSG00000021476 Habp4 ENSMUST00000222806 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021476 Habp4 ENSMUST00000223377 - NO_TRANSLATION retained_intron ENSMUSG00000025872 Thoc3 ENSMUST00000026990 ENSMUSP00000026990 TRANSLATION protein_coding - CCDS26527.1 1 351.0 0.0 5.44 8.9 96.8 0.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000025872 Thoc3 ENSMUST00000135404 - NO_TRANSLATION retained_intron ENSMUSG00000025872 Thoc3 ENSMUST00000151158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021388 Aspn ENSMUST00000021820 ENSMUSP00000021820 TRANSLATION protein_coding - CCDS26503.1 1 373.0 0.0 6.4 16.5 148.6 0.0 3,-2 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000021388 Aspn ENSMUST00000177948 ENSMUSP00000136728 TRANSLATION protein_coding - CCDS26503.1 1 373.0 0.0 6.4 16.5 148.6 0.0 3,-2 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000064288 H4c12 ENSMUST00000102983 ENSMUSP00000100048 TRANSLATION protein_coding - CCDS26292.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069255 Dusp22 ENSMUST00000221725 ENSMUSP00000152283 TRANSLATION nonsense_mediated_decay - - 5 54.0 0.0 1.778 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000069255 Dusp22 ENSMUST00000091672 ENSMUSP00000089260 TRANSLATION protein_coding - CCDS26417.1 1 184.0 8.0 4.91 7.6 114.6 0.0 -4,-6 0.4471 3 19.484 MINOR ENSMUSG00000069255 Dusp22 ENSMUST00000095914 ENSMUSP00000093603 TRANSLATION protein_coding - CCDS26418.1 1 205.0 8.0 4.66 18.8 114.6 0.0 -4,-6 1.0 2 21.502 PRINCIPAL:1 ENSMUSG00000069255 Dusp22 ENSMUST00000220748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069255 Dusp22 ENSMUST00000110310 ENSMUSP00000105939 TRANSLATION protein_coding - - 2 90.0 0.0 2.91 0.0 42.7 0.0 -4,-5 0.0 1 3.684 MINOR ENSMUSG00000021441 Cts6 ENSMUST00000021890 ENSMUSP00000021890 TRANSLATION protein_coding - CCDS26586.1 1 334.0 4.0 6.3 10.3 303.0 0.0 4,-1 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000042385 Gzmk ENSMUST00000038212 ENSMUSP00000044512 TRANSLATION protein_coding - CCDS26783.1 1 263.0 13.0 4.5 5.3 231.3 0.0 0,-3 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000042385 Gzmk ENSMUST00000122399 ENSMUSP00000113530 TRANSLATION protein_coding - - 1 224.0 13.0 4.0 0.9 211.9 0.0 -4,-7 0.0365 1 15.834 MINOR ENSMUSG00000042385 Gzmk ENSMUST00000140324 ENSMUSP00000114250 TRANSLATION nonsense_mediated_decay - - 5 69.0 3.0 1.5 0.0 63.3 0.0 0,-3 0.0018 - -2.0 MINOR ENSMUSG00000063905 Zfp1000 ENSMUST00000081471 ENSMUSP00000080191 TRANSLATION protein_coding start/stop - - 57.0 8.0 1.0 0.0 47.0 0.0 -4,-5 0.7645 - -2.0 PRINCIPAL:1 ENSMUSG00000021576 Pdcd6 ENSMUST00000022060 ENSMUSP00000022060 TRANSLATION protein_coding - CCDS26642.1 1 191.0 29.0 5.05 13.6 61.9 0.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000021576 Pdcd6 ENSMUST00000220861 - NO_TRANSLATION retained_intron ENSMUSG00000021576 Pdcd6 ENSMUST00000222759 ENSMUSP00000152458 TRANSLATION protein_coding - - 2 189.0 29.0 5.05 10.6 58.7 0.0 -4,-7 0.7433 7 20.736 MINOR ENSMUSG00000021576 Pdcd6 ENSMUST00000222993 - NO_TRANSLATION retained_intron ENSMUSG00000021576 Pdcd6 ENSMUST00000223386 - NO_TRANSLATION retained_intron ENSMUSG00000021678 F2rl1 ENSMUST00000022185 ENSMUSP00000022185 TRANSLATION protein_coding - CCDS26700.1 1 399.0 0.0 1.2 0.0 142.0 0.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000069171 Nr2f1 ENSMUST00000135284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069171 Nr2f1 ENSMUST00000127137 ENSMUSP00000133704 TRANSLATION protein_coding - CCDS84039.1 5 263.0 0.0 2.04 8.9 136.9 0.0 -4,-5 0.2275 1 5.504 MINOR ENSMUSG00000069171 Nr2f1 ENSMUST00000125176 ENSMUSP00000122618 TRANSLATION protein_coding - CCDS84040.1 5 273.0 0.0 2.04 10.2 136.9 0.0 -4,-7 0.2642 1 5.7 MINOR ENSMUSG00000069171 Nr2f1 ENSMUST00000091458 ENSMUSP00000089036 TRANSLATION protein_coding - CCDS26658.1 1 420.0 8.0 2.84 27.4 244.7 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000069171 Nr2f1 ENSMUST00000150498 ENSMUSP00000118161 TRANSLATION protein_coding - CCDS84039.1 1 263.0 0.0 2.04 8.9 136.9 0.0 -4,-5 0.2275 1 5.504 MINOR ENSMUSG00000069171 Nr2f1 ENSMUST00000224798 ENSMUSP00000153321 TRANSLATION protein_coding stop - - 95.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000051456 Hspb3 ENSMUST00000054650 ENSMUSP00000054193 TRANSLATION protein_coding - CCDS26785.1 - 154.0 0.0 0.8 11.9 55.7 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000021615 Xrcc4 ENSMUST00000159199 ENSMUSP00000123934 TRANSLATION nonsense_mediated_decay - - 1 314.0 0.0 4.83 1.1 465.0 0.0 -4,-6 0.1068 3 -2.0 MINOR ENSMUSG00000021615 Xrcc4 ENSMUST00000160232 ENSMUSP00000125486 TRANSLATION protein_coding stop - 5 94.0 0.0 2.33 0.0 145.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021615 Xrcc4 ENSMUST00000161396 ENSMUSP00000124573 TRANSLATION protein_coding stop - 3 83.0 0.0 2.0 0.0 132.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021615 Xrcc4 ENSMUST00000022115 ENSMUSP00000022115 TRANSLATION protein_coding - CCDS26673.1 1 326.0 0.0 4.83 9.9 499.6 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000021464 Ror2 ENSMUST00000130235 ENSMUSP00000123362 TRANSLATION protein_coding - - 1 932.0 19.0 1.0 0.0 477.1 1.0 -4,-7 0.2113 12 14.0 ALTERNATIVE:2 ENSMUSG00000021464 Ror2 ENSMUST00000021918 ENSMUSP00000021918 TRANSLATION protein_coding - CCDS26520.1 1 944.0 19.0 1.0 3.2 477.1 1.0 2,-2 1.0 12 15.0 PRINCIPAL:2 ENSMUSG00000021464 Ror2 ENSMUST00000149299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051029 Serpinb1b ENSMUST00000222973 ENSMUSP00000152793 TRANSLATION protein_coding stop - 5 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0168 - -2.0 MINOR ENSMUSG00000051029 Serpinb1b ENSMUST00000016951 ENSMUSP00000016951 TRANSLATION protein_coding - CCDS26433.1 1 382.0 0.0 5.8 28.4 436.4 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000069227 Gprin1 ENSMUST00000099506 ENSMUSP00000097106 TRANSLATION protein_coding - CCDS26534.1 1 932.0 0.0 0.0 0.0 137.9 0.0 -4,-6 1.0 37 6.0 PRINCIPAL:1 ENSMUSG00000069227 Gprin1 ENSMUST00000135343 ENSMUSP00000115539 TRANSLATION protein_coding - CCDS26534.1 1 932.0 0.0 0.0 0.0 137.9 0.0 -4,-6 1.0 37 6.0 PRINCIPAL:1 ENSMUSG00000058672 Tubb2a ENSMUST00000056427 ENSMUSP00000060246 TRANSLATION protein_coding - CCDS26444.1 1 445.0 16.0 3.5 24.8 377.1 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000071478 H2ac7 ENSMUST00000090776 ENSMUSP00000088281 TRANSLATION protein_coding - CCDS26351.1 - 130.0 0.0 1.0 11.0 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021357 Exoc2 ENSMUST00000221678 - NO_TRANSLATION retained_intron ENSMUSG00000021357 Exoc2 ENSMUST00000102946 ENSMUSP00000100010 TRANSLATION protein_coding - CCDS26420.1 1 924.0 0.0 3.33 23.3 219.6 0.0 -4,-6 1.0 26 16.0 PRINCIPAL:1 ENSMUSG00000021357 Exoc2 ENSMUST00000223216 - NO_TRANSLATION retained_intron ENSMUSG00000021357 Exoc2 ENSMUST00000021785 ENSMUSP00000021785 TRANSLATION protein_coding - CCDS26420.1 1 924.0 0.0 3.33 23.3 219.6 0.0 -4,-6 1.0 26 16.0 PRINCIPAL:1 ENSMUSG00000021357 Exoc2 ENSMUST00000222133 - NO_TRANSLATION retained_intron ENSMUSG00000021357 Exoc2 ENSMUST00000220532 - NO_TRANSLATION retained_intron ENSMUSG00000021357 Exoc2 ENSMUST00000220490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021606 Ndufs6 ENSMUST00000222930 ENSMUSP00000152495 TRANSLATION protein_coding - - 3 124.0 3.0 2.885 3.4 49.3 0.0 -2,1 0.0903 7 13.938 MINOR ENSMUSG00000021606 Ndufs6 ENSMUST00000022097 ENSMUSP00000022097 TRANSLATION protein_coding - CCDS26630.1 1 116.0 3.0 3.05 11.9 64.2 0.0 -2,1 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000021606 Ndufs6 ENSMUST00000223293 ENSMUSP00000152073 TRANSLATION protein_coding - - 2 98.0 1.0 2.3 0.0 36.4 0.0 -2,1 0.0018 6 8.901 MINOR ENSMUSG00000021606 Ndufs6 ENSMUST00000147407 ENSMUSP00000119457 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 0.8 0.0 0.0 0.0 -1,1 0.0004 1 -2.0 MINOR ENSMUSG00000071491 Vmn1r209 ENSMUST00000095961 ENSMUSP00000093657 TRANSLATION protein_coding - CCDS36617.1 - 312.0 0.0 0.0 0.0 119.9 3.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000071491 Vmn1r209 ENSMUST00000227265 ENSMUSP00000153997 TRANSLATION protein_coding - CCDS36617.1 - 312.0 0.0 0.0 0.0 119.9 3.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000071491 Vmn1r209 ENSMUST00000227038 ENSMUSP00000154503 TRANSLATION protein_coding - CCDS36617.1 - 312.0 0.0 0.0 0.0 119.9 3.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091682 Trgc3 ENSMUST00000198163 ENSMUSP00000143383 TRANSLATION TR_C_gene start - - 148.0 0.0 1.0 0.0 38.9 0.0 -4,-5 0.771 - -2.0 PRINCIPAL:1 ENSMUSG00000016756 Cmah ENSMUST00000224953 ENSMUSP00000153652 TRANSLATION protein_coding - CCDS26376.1 - 577.0 5.0 12.5 5.6 26.0 0.0 -4,-6 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000016756 Cmah ENSMUST00000224657 ENSMUSP00000153495 TRANSLATION protein_coding - CCDS26376.1 - 577.0 5.0 12.5 5.6 26.0 0.0 -4,-6 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000016756 Cmah ENSMUST00000144621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016756 Cmah ENSMUST00000142882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016756 Cmah ENSMUST00000167746 ENSMUSP00000129007 TRANSLATION protein_coding - CCDS26376.1 1 577.0 5.0 12.5 5.6 26.0 0.0 -4,-6 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000016756 Cmah ENSMUST00000131691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016756 Cmah ENSMUST00000225046 - NO_TRANSLATION retained_intron ENSMUSG00000016756 Cmah ENSMUST00000050859 ENSMUSP00000061045 TRANSLATION protein_coding - CCDS26376.1 5 577.0 5.0 12.5 5.6 26.0 0.0 -4,-6 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000016756 Cmah ENSMUST00000224819 ENSMUSP00000153248 TRANSLATION protein_coding - - - 432.0 4.0 9.5 0.0 0.0 0.0 -4,-5 0.0009 8 4.0 MINOR ENSMUSG00000016756 Cmah ENSMUST00000110391 ENSMUSP00000106021 TRANSLATION protein_coding - CCDS26376.1 1 577.0 5.0 12.5 5.6 26.0 0.0 -4,-6 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000017778 Cox7c ENSMUST00000017922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017778 Cox7c ENSMUST00000131011 ENSMUSP00000115419 TRANSLATION protein_coding - CCDS26668.1 1 63.0 0.0 2.0 33.9 88.6 1.0 -4,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000017778 Cox7c ENSMUST00000132233 ENSMUSP00000117385 TRANSLATION protein_coding - - 2 49.0 0.0 1.25 0.0 59.7 1.0 -3,-6 0.0026 1 7.794 MINOR ENSMUSG00000017778 Cox7c ENSMUST00000078764 ENSMUSP00000119276 TRANSLATION protein_coding - - 2 24.0 0.0 0.75 0.0 33.9 0.0 -4,-7 0.0 - 4.548 MINOR ENSMUSG00000094942 Gm3604 ENSMUST00000187656 ENSMUSP00000139845 TRANSLATION protein_coding - CCDS79201.1 1 559.0 59.0 3.3 0.1 394.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000094942 Gm3604 ENSMUST00000202194 ENSMUSP00000144048 TRANSLATION protein_coding - - 3 122.0 0.0 1.8 0.0 79.9 0.0 -4,-5 0.0 - 3.0 MINOR ENSMUSG00000094942 Gm3604 ENSMUST00000107989 ENSMUSP00000103623 TRANSLATION protein_coding start - 5 558.0 59.0 3.3 0.1 394.0 0.0 -4,-5 0.5697 - -2.0 MINOR ENSMUSG00000095125 Vmn1r198 ENSMUST00000226786 ENSMUSP00000154486 TRANSLATION protein_coding - CCDS26316.1 - 300.0 0.0 0.0 2.6 128.9 4.0 -1,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000095125 Vmn1r198 ENSMUST00000227167 ENSMUSP00000154434 TRANSLATION protein_coding - - - 211.0 0.0 0.0 0.0 106.0 3.0 4,-1 0.0066 - 4.626 MINOR ENSMUSG00000095125 Vmn1r198 ENSMUST00000091733 ENSMUSP00000089327 TRANSLATION protein_coding - CCDS26316.1 - 300.0 0.0 0.0 2.6 128.9 4.0 -1,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000095125 Vmn1r198 ENSMUST00000226909 ENSMUSP00000153942 TRANSLATION protein_coding - CCDS26316.1 - 300.0 0.0 0.0 2.6 128.9 4.0 -1,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000050954 Zfp169 ENSMUST00000177530 ENSMUSP00000135414 TRANSLATION protein_coding - CCDS26493.2 1 731.0 68.0 2.8 0.4 442.0 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000050954 Zfp169 ENSMUST00000176949 ENSMUSP00000135695 TRANSLATION protein_coding stop - 3 107.0 0.0 1.8 0.0 83.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000050954 Zfp169 ENSMUST00000176176 ENSMUSP00000134793 TRANSLATION protein_coding - CCDS49256.1 1 136.0 0.0 1.8 0.0 83.3 0.0 -4,-7 0.0188 - 3.858 MINOR ENSMUSG00000050954 Zfp169 ENSMUST00000167682 ENSMUSP00000127591 TRANSLATION protein_coding - CCDS49256.1 5 136.0 0.0 1.8 0.0 83.3 0.0 -4,-7 0.0188 - 3.858 MINOR ENSMUSG00000050954 Zfp169 ENSMUST00000110110 ENSMUSP00000105737 TRANSLATION protein_coding - CCDS26493.2 5 731.0 68.0 2.8 0.4 442.0 0.0 -4,-6 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000050954 Zfp169 ENSMUST00000176996 ENSMUSP00000135520 TRANSLATION protein_coding stop - 2 132.0 0.0 1.8 0.0 83.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000050954 Zfp169 ENSMUST00000177474 - NO_TRANSLATION retained_intron ENSMUSG00000074794 Arrdc3 ENSMUST00000159856 - NO_TRANSLATION retained_intron ENSMUSG00000074794 Arrdc3 ENSMUST00000159690 ENSMUSP00000124418 TRANSLATION nonsense_mediated_decay - - 1 365.0 0.0 5.66 0.7 187.2 0.0 -4,-5 0.1554 - -2.0 MINOR ENSMUSG00000074794 Arrdc3 ENSMUST00000162904 - NO_TRANSLATION retained_intron ENSMUSG00000074794 Arrdc3 ENSMUST00000159090 - NO_TRANSLATION retained_intron ENSMUSG00000074794 Arrdc3 ENSMUST00000161441 ENSMUSP00000125455 TRANSLATION protein_coding - - 1 194.0 0.0 1.8 13.6 33.1 0.0 -4,-5 0.3582 - 1.752 MINOR ENSMUSG00000074794 Arrdc3 ENSMUST00000099356 ENSMUSP00000096957 TRANSLATION protein_coding - CCDS36736.1 1 414.0 0.0 5.66 29.8 187.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021754 Map3k1 ENSMUST00000130594 - NO_TRANSLATION retained_intron ENSMUSG00000021754 Map3k1 ENSMUST00000145055 ENSMUSP00000117863 TRANSLATION protein_coding stop - 3 263.0 0.0 0.0 0.0 24.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021754 Map3k1 ENSMUST00000109267 ENSMUSP00000104890 TRANSLATION protein_coding - CCDS26771.1 2 1493.0 20.0 5.52 0.0 246.0 0.0 -4,-7 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000021754 Map3k1 ENSMUST00000175936 - NO_TRANSLATION retained_intron ENSMUSG00000021754 Map3k1 ENSMUST00000133364 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021193 Pitrm1 ENSMUST00000222061 - NO_TRANSLATION retained_intron ENSMUSG00000021193 Pitrm1 ENSMUST00000221120 ENSMUSP00000152183 TRANSLATION nonsense_mediated_decay start - 5 65.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000021193 Pitrm1 ENSMUST00000222485 ENSMUSP00000152229 TRANSLATION protein_coding - CCDS36585.1 1 1036.0 4.0 25.0 13.9 423.7 0.0 -4,0 1.0 39 20.0 PRINCIPAL:1 ENSMUSG00000021193 Pitrm1 ENSMUST00000223492 - NO_TRANSLATION retained_intron ENSMUSG00000021193 Pitrm1 ENSMUST00000021611 ENSMUSP00000021611 TRANSLATION protein_coding - - 1 997.0 4.0 24.0 0.0 407.4 0.0 -4,0 0.0717 37 13.024 MINOR ENSMUSG00000021193 Pitrm1 ENSMUST00000220454 ENSMUSP00000152176 TRANSLATION nonsense_mediated_decay start - 5 46.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000021193 Pitrm1 ENSMUST00000221431 - NO_TRANSLATION retained_intron ENSMUSG00000021193 Pitrm1 ENSMUST00000221911 ENSMUSP00000152053 TRANSLATION nonsense_mediated_decay - - 3 93.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000038546 Ranbp9 ENSMUST00000222239 ENSMUSP00000152113 TRANSLATION nonsense_mediated_decay start - 5 96.0 0.0 2.16 0.0 53.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038546 Ranbp9 ENSMUST00000220529 - NO_TRANSLATION retained_intron ENSMUSG00000038546 Ranbp9 ENSMUST00000222023 ENSMUSP00000152077 TRANSLATION protein_coding stop - 5 64.0 0.0 1.5 0.0 39.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038546 Ranbp9 ENSMUST00000220500 ENSMUSP00000152415 TRANSLATION nonsense_mediated_decay start - 3 148.0 0.0 2.528 0.0 0.0 0.0 -2,-4 0.0 3 -2.0 MINOR ENSMUSG00000038546 Ranbp9 ENSMUST00000144326 ENSMUSP00000130636 TRANSLATION protein_coding - CCDS49252.1 5 710.0 0.0 7.47 0.0 279.9 0.0 -3,-6 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000038546 Ranbp9 ENSMUST00000220601 - NO_TRANSLATION retained_intron ENSMUSG00000038546 Ranbp9 ENSMUST00000222651 ENSMUSP00000152620 TRANSLATION protein_coding - - 1 546.0 0.0 6.602 0.0 279.9 0.0 -4,-6 0.0249 13 10.266 MINOR ENSMUSG00000038546 Ranbp9 ENSMUST00000221092 ENSMUSP00000152869 TRANSLATION protein_coding start - 5 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003062 Stard3nl ENSMUST00000196712 - NO_TRANSLATION retained_intron ENSMUSG00000003062 Stard3nl ENSMUST00000039694 ENSMUSP00000037991 TRANSLATION protein_coding - CCDS26259.1 1 235.0 0.0 1.5 19.3 213.6 5.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000003062 Stard3nl ENSMUST00000199278 - NO_TRANSLATION retained_intron ENSMUSG00000003062 Stard3nl ENSMUST00000196537 - NO_TRANSLATION retained_intron ENSMUSG00000003062 Stard3nl ENSMUST00000222869 ENSMUSP00000152373 TRANSLATION protein_coding - - 5 225.0 0.0 1.5 0.0 137.6 5.0 -4,-6 0.0429 1 7.44 MINOR ENSMUSG00000003062 Stard3nl ENSMUST00000197565 ENSMUSP00000152747 TRANSLATION protein_coding - CCDS26259.1 5 235.0 0.0 1.5 19.3 213.6 5.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000003062 Stard3nl ENSMUST00000196268 - NO_TRANSLATION retained_intron ENSMUSG00000003062 Stard3nl ENSMUST00000221380 ENSMUSP00000152371 TRANSLATION protein_coding - - 5 265.0 0.0 1.5 0.0 213.6 5.0 -4,-6 0.0775 2 12.0 MINOR ENSMUSG00000003062 Stard3nl ENSMUST00000200323 ENSMUSP00000142680 TRANSLATION protein_coding - CCDS84008.1 1 263.0 0.0 1.5 0.0 213.6 5.0 -4,-6 0.2655 2 12.0 MINOR ENSMUSG00000003062 Stard3nl ENSMUST00000199924 ENSMUSP00000143262 TRANSLATION protein_coding stop - 5 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035493 Tgfbi ENSMUST00000045173 ENSMUSP00000037719 TRANSLATION protein_coding - CCDS36680.1 1 683.0 0.0 13.798 1.1 369.5 0.0 4,-1 1.0 22 13.0 PRINCIPAL:1 ENSMUSG00000035493 Tgfbi ENSMUST00000225300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035493 Tgfbi ENSMUST00000226024 - NO_TRANSLATION retained_intron ENSMUSG00000035493 Tgfbi ENSMUST00000223661 - NO_TRANSLATION retained_intron ENSMUSG00000035493 Tgfbi ENSMUST00000225600 ENSMUSP00000153546 TRANSLATION nonsense_mediated_decay - - - 651.0 0.0 13.55 0.0 369.5 0.0 4,-1 0.2135 21 -2.0 MINOR ENSMUSG00000034575 Tent4a ENSMUST00000198607 ENSMUSP00000142516 TRANSLATION protein_coding - - 1 785.0 17.0 7.83 1.1 121.1 0.0 -4,-5 0.2305 2 18.036 MINOR ENSMUSG00000034575 Tent4a ENSMUST00000223344 ENSMUSP00000152244 TRANSLATION protein_coding - CCDS26622.1 3 542.0 17.0 7.5 9.2 121.1 0.0 -4,-6 1.0 1 20.34 PRINCIPAL:1 ENSMUSG00000034575 Tent4a ENSMUST00000222497 - NO_TRANSLATION retained_intron ENSMUSG00000021538 Il9 ENSMUST00000022019 ENSMUSP00000022019 TRANSLATION protein_coding - CCDS26562.1 1 144.0 0.0 3.63 2.8 147.0 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000021428 Riok1 ENSMUST00000225816 - NO_TRANSLATION retained_intron ENSMUSG00000021428 Riok1 ENSMUST00000224962 - NO_TRANSLATION retained_intron ENSMUSG00000021428 Riok1 ENSMUST00000225174 - NO_TRANSLATION retained_intron ENSMUSG00000021428 Riok1 ENSMUST00000226006 - NO_TRANSLATION retained_intron ENSMUSG00000021428 Riok1 ENSMUST00000225418 - NO_TRANSLATION retained_intron ENSMUSG00000021428 Riok1 ENSMUST00000226056 - NO_TRANSLATION retained_intron ENSMUSG00000021428 Riok1 ENSMUST00000223656 ENSMUSP00000153494 TRANSLATION nonsense_mediated_decay - - - 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021428 Riok1 ENSMUST00000226110 ENSMUSP00000153217 TRANSLATION protein_coding stop - - 113.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021428 Riok1 ENSMUST00000021866 ENSMUSP00000021866 TRANSLATION protein_coding - CCDS26461.1 1 567.0 21.0 11.754 0.4 254.6 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000021428 Riok1 ENSMUST00000224683 - NO_TRANSLATION retained_intron ENSMUSG00000021428 Riok1 ENSMUST00000224956 ENSMUSP00000152922 TRANSLATION protein_coding start/stop - - 206.0 10.0 5.49 0.0 73.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021428 Riok1 ENSMUST00000225954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021428 Riok1 ENSMUST00000223910 - NO_TRANSLATION retained_intron ENSMUSG00000021428 Riok1 ENSMUST00000224477 ENSMUSP00000153030 TRANSLATION nonsense_mediated_decay - - - 152.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039087 Rreb1 ENSMUST00000110238 ENSMUSP00000105867 TRANSLATION protein_coding - CCDS36634.1 1 1291.0 44.0 2.975 0.0 127.5 0.0 -4,-5 0.0787 15 6.966 MINOR ENSMUSG00000039087 Rreb1 ENSMUST00000162849 ENSMUSP00000124802 TRANSLATION protein_coding start - 2 320.0 8.0 0.42 0.0 20.2 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000039087 Rreb1 ENSMUST00000138043 ENSMUSP00000124745 TRANSLATION protein_coding stop - 2 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0439 - -2.0 MINOR ENSMUSG00000039087 Rreb1 ENSMUST00000149745 ENSMUSP00000121211 TRANSLATION protein_coding - CCDS36634.1 1 1291.0 44.0 2.975 0.0 127.5 0.0 -4,-5 0.0787 15 6.966 MINOR ENSMUSG00000039087 Rreb1 ENSMUST00000128570 ENSMUSP00000115599 TRANSLATION protein_coding - CCDS49238.1 5 1754.0 59.0 4.095 0.1 174.1 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000039087 Rreb1 ENSMUST00000122842 ENSMUSP00000117048 TRANSLATION protein_coding stop - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0308 - -2.0 MINOR ENSMUSG00000039087 Rreb1 ENSMUST00000124268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039087 Rreb1 ENSMUST00000110237 ENSMUSP00000105866 TRANSLATION protein_coding - CCDS36634.1 1 1291.0 44.0 2.975 0.0 127.5 0.0 -4,-5 0.0787 15 6.966 MINOR ENSMUSG00000039087 Rreb1 ENSMUST00000037232 ENSMUSP00000049265 TRANSLATION protein_coding - CCDS49238.1 5 1754.0 59.0 4.095 0.1 174.1 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000039087 Rreb1 ENSMUST00000138110 ENSMUSP00000116557 TRANSLATION protein_coding stop - 3 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000039087 Rreb1 ENSMUST00000124373 ENSMUSP00000118420 TRANSLATION nonsense_mediated_decay - - 5 67.0 0.0 0.075 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074824 Rslcan18 ENSMUST00000189620 - NO_TRANSLATION retained_intron ENSMUSG00000074824 Rslcan18 ENSMUST00000091526 ENSMUSP00000089111 TRANSLATION protein_coding - CCDS56890.1 5 460.0 38.0 1.2 0.0 268.7 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000108426 Or14p1 ENSMUST00000206324 ENSMUSP00000146183 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 1.6 131.7 0.0 -4,-7 0.8815 - 13.0 PRINCIPAL:1 ENSMUSG00000069310 H3c3 ENSMUST00000091752 ENSMUSP00000089346 TRANSLATION protein_coding - CCDS26362.1 - 136.0 0.0 1.0 31.8 181.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000094870 Zfp131 ENSMUST00000223797 ENSMUSP00000153017 TRANSLATION protein_coding start - - 103.0 8.0 0.7 0.0 25.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000094870 Zfp131 ENSMUST00000178271 ENSMUSP00000136019 TRANSLATION protein_coding - CCDS56903.1 1 585.0 18.0 2.86 8.0 132.3 0.0 -4,-5 0.8881 1 17.529 MINOR ENSMUSG00000094870 Zfp131 ENSMUST00000223812 ENSMUSP00000153596 TRANSLATION protein_coding - - - 112.0 0.0 1.4 0.0 54.6 0.0 -4,-5 0.0 - 3.216 MINOR ENSMUSG00000094870 Zfp131 ENSMUST00000225484 ENSMUSP00000153572 TRANSLATION nonsense_mediated_decay start - - 62.0 0.0 0.6 0.0 24.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000094870 Zfp131 ENSMUST00000224946 ENSMUSP00000153517 TRANSLATION protein_coding - - - 353.0 11.0 3.3 0.0 112.1 0.0 -4,-5 0.0105 1 10.47 MINOR ENSMUSG00000094870 Zfp131 ENSMUST00000223722 ENSMUSP00000153044 TRANSLATION protein_coding - CCDS79245.1 - 619.0 21.0 3.46 8.7 132.3 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000094870 Zfp131 ENSMUST00000224969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094870 Zfp131 ENSMUST00000177916 ENSMUSP00000136867 TRANSLATION protein_coding - CCDS79245.1 1 619.0 21.0 3.46 8.7 132.3 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000094870 Zfp131 ENSMUST00000223813 ENSMUSP00000152941 TRANSLATION protein_coding - CCDS56903.1 - 585.0 18.0 2.86 8.0 132.3 0.0 -4,-5 0.8881 1 17.529 MINOR ENSMUSG00000063846 Gm21731 ENSMUST00000223770 ENSMUSP00000153383 TRANSLATION protein_coding - - - 180.0 0.0 0.0 0.0 289.3 0.0 -4,-5 0.7487 - 6.0 PRINCIPAL:1 ENSMUSG00000078958 Atp6ap1l ENSMUST00000183162 ENSMUSP00000138517 TRANSLATION protein_coding start - 5 144.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078958 Atp6ap1l ENSMUST00000109541 ENSMUSP00000105168 TRANSLATION protein_coding - CCDS49325.1 1 336.0 0.0 3.65 9.0 126.1 0.0 2,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078958 Atp6ap1l ENSMUST00000182104 ENSMUSP00000138331 TRANSLATION protein_coding start - 5 87.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000078958 Atp6ap1l ENSMUST00000182932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078958 Atp6ap1l ENSMUST00000182446 ENSMUSP00000138791 TRANSLATION nonsense_mediated_decay - - 5 35.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0019 - -2.0 MINOR ENSMUSG00000069306 H4c17 ENSMUST00000104941 ENSMUSP00000100546 TRANSLATION protein_coding - CCDS56872.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021403 Serpinb9b ENSMUST00000220566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021403 Serpinb9b ENSMUST00000006392 ENSMUSP00000006392 TRANSLATION protein_coding - CCDS26432.1 1 377.0 0.0 5.04 12.5 417.2 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000039233 Tbce ENSMUST00000039894 ENSMUSP00000047880 TRANSLATION protein_coding - CCDS26247.1 1 524.0 0.0 7.4 20.9 94.4 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000039233 Tbce ENSMUST00000160510 - NO_TRANSLATION retained_intron ENSMUSG00000039233 Tbce ENSMUST00000160304 - NO_TRANSLATION retained_intron ENSMUSG00000039233 Tbce ENSMUST00000159966 - NO_TRANSLATION retained_intron ENSMUSG00000039233 Tbce ENSMUST00000162326 ENSMUSP00000125613 TRANSLATION nonsense_mediated_decay - - 1 428.0 0.0 4.45 0.0 70.3 0.0 -4,-5 0.0026 13 -2.0 MINOR ENSMUSG00000039233 Tbce ENSMUST00000162241 - NO_TRANSLATION retained_intron ENSMUSG00000039233 Tbce ENSMUST00000159239 - NO_TRANSLATION retained_intron ENSMUSG00000039233 Tbce ENSMUST00000160553 - NO_TRANSLATION retained_intron ENSMUSG00000039233 Tbce ENSMUST00000160776 - NO_TRANSLATION retained_intron ENSMUSG00000039233 Tbce ENSMUST00000161554 - NO_TRANSLATION retained_intron ENSMUSG00000039233 Tbce ENSMUST00000159893 ENSMUSP00000125244 TRANSLATION nonsense_mediated_decay - - 5 75.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039233 Tbce ENSMUST00000162440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039233 Tbce ENSMUST00000159427 - NO_TRANSLATION retained_intron ENSMUSG00000021478 Drd1 ENSMUST00000221470 ENSMUSP00000152768 TRANSLATION protein_coding - - 1 439.0 0.0 0.5 0.0 237.6 7.0 -4,-6 0.1398 5 12.0 MINOR ENSMUSG00000021478 Drd1 ENSMUST00000222706 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021478 Drd1 ENSMUST00000021932 ENSMUSP00000021932 TRANSLATION protein_coding - CCDS26524.1 1 446.0 0.0 0.5 12.4 237.6 7.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000021335 Slc17a1 ENSMUST00000006785 ENSMUSP00000006785 TRANSLATION protein_coding - CCDS26372.1 1 465.0 0.0 5.45 6.3 160.0 11.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000021335 Slc17a1 ENSMUST00000129042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021335 Slc17a1 ENSMUST00000130211 ENSMUSP00000120824 TRANSLATION protein_coding stop - 3 65.0 0.0 0.4 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000021335 Slc17a1 ENSMUST00000110413 ENSMUSP00000106043 TRANSLATION protein_coding - CCDS26372.1 1 465.0 0.0 5.45 6.3 160.0 11.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050002 Idnk ENSMUST00000109868 ENSMUSP00000105494 TRANSLATION protein_coding - CCDS36683.1 1 84.0 8.0 1.364 0.1 37.3 0.0 -4,-7 0.0254 2 13.716 MINOR ENSMUSG00000050002 Idnk ENSMUST00000051490 ENSMUSP00000060218 TRANSLATION protein_coding - CCDS36682.1 1 184.0 9.0 2.334 8.1 45.9 0.0 -4,-7 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000050002 Idnk ENSMUST00000226010 ENSMUSP00000153324 TRANSLATION protein_coding - - - 75.0 8.0 1.364 0.0 37.3 0.0 -4,-7 0.0003 2 13.716 MINOR ENSMUSG00000050002 Idnk ENSMUST00000225236 ENSMUSP00000152973 TRANSLATION nonsense_mediated_decay - - - 48.0 6.0 0.5 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000021549 Rasa1 ENSMUST00000146792 - NO_TRANSLATION retained_intron ENSMUSG00000021549 Rasa1 ENSMUST00000149799 - NO_TRANSLATION retained_intron ENSMUSG00000021549 Rasa1 ENSMUST00000223598 ENSMUSP00000153378 TRANSLATION protein_coding start - - 497.0 0.0 8.514 0.0 115.4 0.0 -4,-5 0.0 19 -2.0 MINOR ENSMUSG00000021549 Rasa1 ENSMUST00000132711 - NO_TRANSLATION retained_intron ENSMUSG00000021549 Rasa1 ENSMUST00000148014 - NO_TRANSLATION retained_intron ENSMUSG00000021549 Rasa1 ENSMUST00000153231 - NO_TRANSLATION retained_intron ENSMUSG00000021549 Rasa1 ENSMUST00000152466 - NO_TRANSLATION retained_intron ENSMUSG00000021549 Rasa1 ENSMUST00000109552 ENSMUSP00000105179 TRANSLATION protein_coding - CCDS26667.2 1 1038.0 0.0 15.724 4.4 358.7 0.0 -4,-5 1.0 25 14.0 PRINCIPAL:1 ENSMUSG00000021549 Rasa1 ENSMUST00000141879 - NO_TRANSLATION retained_intron ENSMUSG00000021549 Rasa1 ENSMUST00000142285 - NO_TRANSLATION retained_intron ENSMUSG00000021718 Nt5el ENSMUST00000022232 ENSMUSP00000022232 TRANSLATION protein_coding - CCDS26755.1 1 585.0 14.0 2.605 0.0 173.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000094796 BC147527 ENSMUST00000081558 ENSMUSP00000111141 TRANSLATION protein_coding - CCDS56910.1 - 167.0 0.0 0.0 0.0 291.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094796 BC147527 ENSMUST00000225029 ENSMUSP00000153422 TRANSLATION protein_coding - CCDS56910.1 - 167.0 0.0 0.0 0.0 291.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000099517 H3c8 ENSMUST00000080859 ENSMUSP00000079670 TRANSLATION protein_coding - CCDS26342.1 - 136.0 0.0 1.0 20.2 183.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095300 Gm906 ENSMUST00000099521 ENSMUSP00000097121 TRANSLATION protein_coding - CCDS49262.1 1 1017.0 0.0 1.0 0.0 48.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042743 Sgtb ENSMUST00000159574 ENSMUSP00000124895 TRANSLATION protein_coding stop - 5 244.0 0.0 4.33825 0.0 97.8 0.0 -4,-7 0.0008 6 -2.0 MINOR ENSMUSG00000042743 Sgtb ENSMUST00000160322 ENSMUSP00000125569 TRANSLATION protein_coding stop - 3 176.0 0.0 4.689 0.0 120.1 0.0 -4,-6 0.0021 5 -2.0 MINOR ENSMUSG00000042743 Sgtb ENSMUST00000044385 ENSMUSP00000041307 TRANSLATION protein_coding - CCDS26746.1 1 304.0 0.0 5.99975 27.2 157.7 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000021374 Nup153 ENSMUST00000183299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021374 Nup153 ENSMUST00000224062 ENSMUSP00000153069 TRANSLATION protein_coding start/stop - - 256.0 0.0 0.0 0.0 381.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021374 Nup153 ENSMUST00000182156 - NO_TRANSLATION retained_intron ENSMUSG00000021374 Nup153 ENSMUST00000224203 ENSMUSP00000153686 TRANSLATION protein_coding start/stop - - 303.0 14.0 0.2 0.0 122.9 0.0 -4,-5 0.0013 8 -2.0 MINOR ENSMUSG00000021374 Nup153 ENSMUST00000182914 - NO_TRANSLATION retained_intron ENSMUSG00000021374 Nup153 ENSMUST00000225894 ENSMUSP00000153196 TRANSLATION protein_coding start/stop - - 203.0 0.0 0.0 0.0 172.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021374 Nup153 ENSMUST00000224186 - NO_TRANSLATION retained_intron ENSMUSG00000021374 Nup153 ENSMUST00000021803 ENSMUSP00000021803 TRANSLATION protein_coding - CCDS26486.1 1 1462.0 18.0 1.0 0.0 978.6 0.0 -4,-5 1.0 36 18.0 PRINCIPAL:1 ENSMUSG00000021374 Nup153 ENSMUST00000182358 - NO_TRANSLATION retained_intron ENSMUSG00000021427 Ssr1 ENSMUST00000224399 ENSMUSP00000153346 TRANSLATION protein_coding stop - - 115.0 0.0 2.0 0.0 107.8 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000021427 Ssr1 ENSMUST00000021864 ENSMUSP00000021864 TRANSLATION protein_coding - CCDS26459.1 1 286.0 0.0 5.3 4.6 404.4 2.0 2,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000021427 Ssr1 ENSMUST00000225246 ENSMUSP00000153120 TRANSLATION protein_coding - - - 298.0 0.0 5.3 0.0 394.9 2.0 2,-2 0.0955 4 11.43 MINOR ENSMUSG00000021427 Ssr1 ENSMUST00000225319 ENSMUSP00000152975 TRANSLATION protein_coding - - - 318.0 0.0 5.3 0.0 371.5 2.0 2,-2 0.062 4 10.026 MINOR ENSMUSG00000061376 Vmn1r219 ENSMUST00000228666 ENSMUSP00000154240 TRANSLATION protein_coding - CCDS26334.1 - 312.0 0.0 0.0 0.0 106.8 5.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061376 Vmn1r219 ENSMUST00000226845 ENSMUSP00000154796 TRANSLATION protein_coding - CCDS26334.1 - 312.0 0.0 0.0 0.0 106.8 5.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061376 Vmn1r219 ENSMUST00000228113 ENSMUSP00000154069 TRANSLATION protein_coding - CCDS26334.1 - 312.0 0.0 0.0 0.0 106.8 5.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061376 Vmn1r219 ENSMUST00000076180 ENSMUSP00000075537 TRANSLATION protein_coding - CCDS26334.1 - 312.0 0.0 0.0 0.0 106.8 5.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061376 Vmn1r219 ENSMUST00000227388 ENSMUSP00000154415 TRANSLATION protein_coding - CCDS26334.1 - 312.0 0.0 0.0 0.0 106.8 5.0 -1,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000035958 Tdp2 ENSMUST00000223804 ENSMUSP00000153306 TRANSLATION protein_coding - - - 94.0 0.0 0.7 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000035958 Tdp2 ENSMUST00000225138 ENSMUSP00000153301 TRANSLATION nonsense_mediated_decay - - - 94.0 0.0 0.7 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035958 Tdp2 ENSMUST00000224542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035958 Tdp2 ENSMUST00000225490 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035958 Tdp2 ENSMUST00000226055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035958 Tdp2 ENSMUST00000038039 ENSMUSP00000035660 TRANSLATION protein_coding - CCDS26381.1 1 370.0 0.0 5.7 0.4 29.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000035958 Tdp2 ENSMUST00000130788 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000115020 Vmn1r218 ENSMUST00000228348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000115020 Vmn1r218 ENSMUST00000227050 ENSMUSP00000154543 TRANSLATION protein_coding - CCDS26333.1 - 298.0 0.0 0.0 1.9 135.5 6.0 1,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000115020 Vmn1r218 ENSMUST00000227160 ENSMUSP00000154769 TRANSLATION protein_coding - - - 218.0 0.0 0.0 0.0 114.4 5.0 4,-3 0.0102 - 4.734 MINOR ENSMUSG00000115020 Vmn1r218 ENSMUST00000226692 ENSMUSP00000154191 TRANSLATION protein_coding - CCDS26333.1 - 298.0 0.0 0.0 1.9 135.5 6.0 1,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000115020 Vmn1r218 ENSMUST00000227741 ENSMUSP00000154303 TRANSLATION protein_coding - - - 218.0 0.0 0.0 0.0 114.4 5.0 4,-3 0.0102 - 4.734 MINOR ENSMUSG00000115020 Vmn1r218 ENSMUST00000074992 ENSMUSP00000074519 TRANSLATION protein_coding - CCDS26333.1 - 298.0 0.0 0.0 1.9 135.5 6.0 1,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000055254 Ntrk2 ENSMUST00000109838 ENSMUSP00000105464 TRANSLATION protein_coding - CCDS36685.1 1 476.0 0.0 5.69 11.5 167.5 1.0 4,-1 0.6787 5 3.0 MINOR ENSMUSG00000055254 Ntrk2 ENSMUST00000225583 ENSMUSP00000153337 TRANSLATION protein_coding - - - 466.0 0.0 5.69 0.0 167.5 1.0 4,-1 0.0254 5 0.0 MINOR ENSMUSG00000055254 Ntrk2 ENSMUST00000223636 ENSMUSP00000152907 TRANSLATION nonsense_mediated_decay start - - 51.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000055254 Ntrk2 ENSMUST00000224259 ENSMUSP00000153270 TRANSLATION protein_coding - CCDS36685.1 - 476.0 0.0 5.69 11.5 167.5 1.0 4,-1 0.6787 5 3.0 MINOR ENSMUSG00000055254 Ntrk2 ENSMUST00000224402 ENSMUSP00000153333 TRANSLATION protein_coding - - - 492.0 0.0 5.69 0.0 167.5 1.0 4,-1 0.0049 5 0.0 MINOR ENSMUSG00000055254 Ntrk2 ENSMUST00000225119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055254 Ntrk2 ENSMUST00000225950 ENSMUSP00000153152 TRANSLATION protein_coding - - - 489.0 0.0 5.69 0.0 167.5 1.0 4,-1 0.0049 5 0.0 MINOR ENSMUSG00000055254 Ntrk2 ENSMUST00000226021 - NO_TRANSLATION retained_intron ENSMUSG00000055254 Ntrk2 ENSMUST00000225488 ENSMUSP00000153553 TRANSLATION protein_coding - CCDS26573.1 - 821.0 19.0 10.69 10.8 489.8 1.0 4,-1 1.0 9 20.799 PRINCIPAL:1 ENSMUSG00000055254 Ntrk2 ENSMUST00000079828 ENSMUSP00000078757 TRANSLATION protein_coding - CCDS26573.1 1 821.0 19.0 10.69 10.8 489.8 1.0 4,-1 1.0 9 20.799 PRINCIPAL:1 ENSMUSG00000076744 Trgv7 ENSMUST00000103553 ENSMUSP00000100334 TRANSLATION TR_V_gene stop - - 116.0 0.0 1.2 0.0 37.5 0.0 2,-2 0.8207 - -2.0 PRINCIPAL:1 ENSMUSG00000025867 Cplx2 ENSMUST00000026985 ENSMUSP00000026985 TRANSLATION protein_coding - CCDS36667.1 2 134.0 0.0 1.2 36.9 145.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000021537 Cetn3 ENSMUST00000224705 ENSMUSP00000153322 TRANSLATION protein_coding start - - 137.0 18.0 3.212 0.0 82.4 0.0 -4,-5 0.0013 2 -2.0 MINOR ENSMUSG00000021537 Cetn3 ENSMUST00000224433 ENSMUSP00000153163 TRANSLATION nonsense_mediated_decay - - - 62.0 5.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021537 Cetn3 ENSMUST00000022009 ENSMUSP00000022009 TRANSLATION protein_coding - CCDS26663.1 1 167.0 25.0 4.03 27.2 95.3 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000021537 Cetn3 ENSMUST00000226007 ENSMUSP00000153539 TRANSLATION protein_coding stop - - 100.0 15.0 2.33 0.0 41.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021537 Cetn3 ENSMUST00000223858 - NO_TRANSLATION retained_intron ENSMUSG00000021537 Cetn3 ENSMUST00000224574 ENSMUSP00000153229 TRANSLATION protein_coding stop - - 97.0 12.0 2.33 0.0 35.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021537 Cetn3 ENSMUST00000223793 ENSMUSP00000153541 TRANSLATION protein_coding stop - - 100.0 15.0 2.33 0.0 41.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021537 Cetn3 ENSMUST00000224168 ENSMUSP00000152896 TRANSLATION protein_coding start - - 87.0 10.0 1.12 0.0 42.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000058246 Gm10037 ENSMUST00000221266 ENSMUSP00000152830 TRANSLATION protein_coding - - 2 91.0 0.0 1.698 0.0 82.6 0.0 -4,-5 0.7729 - 8.0 PRINCIPAL:2 ENSMUSG00000058246 Gm10037 ENSMUST00000221620 ENSMUSP00000152317 TRANSLATION protein_coding - - 3 91.0 0.0 1.698 0.0 82.6 0.0 -4,-5 0.7729 - 8.0 PRINCIPAL:2 ENSMUSG00000058246 Gm10037 ENSMUST00000222626 ENSMUSP00000152101 TRANSLATION protein_coding - - 3 74.0 0.0 1.698 0.0 82.6 0.0 -4,-5 0.0584 - 8.0 ALTERNATIVE:2 ENSMUSG00000058246 Gm10037 ENSMUST00000231606 ENSMUSP00000156286 TRANSLATION protein_coding start - - 29.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057842 Zfp595 ENSMUST00000168892 ENSMUSP00000126862 TRANSLATION protein_coding - CCDS36712.1 1 625.0 75.0 1.0 0.0 315.8 0.0 -4,-7 0.655 - 14.0 ALTERNATIVE:2 ENSMUSG00000057842 Zfp595 ENSMUST00000171466 ENSMUSP00000127010 TRANSLATION protein_coding - - 1 622.0 75.0 1.0 0.0 315.8 0.0 -4,-7 0.8444 - 14.0 PRINCIPAL:4 ENSMUSG00000057842 Zfp595 ENSMUST00000169142 ENSMUSP00000129905 TRANSLATION nonsense_mediated_decay - CCDS36712.1 1 625.0 75.0 1.0 0.0 315.8 0.0 -4,-7 0.655 - -2.0 MINOR ENSMUSG00000057842 Zfp595 ENSMUST00000109735 ENSMUSP00000105357 TRANSLATION protein_coding - CCDS36712.1 1 625.0 75.0 1.0 0.0 315.8 0.0 -4,-7 0.655 - 14.0 ALTERNATIVE:2 ENSMUSG00000057842 Zfp595 ENSMUST00000133177 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017064 Prl5a1 ENSMUST00000017208 ENSMUSP00000017208 TRANSLATION protein_coding - CCDS26410.1 1 230.0 0.0 2.1 0.3 162.8 0.0 3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000104630 Trgj3 ENSMUST00000103562 ENSMUSP00000142784 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021413 Prpf4b ENSMUST00000077853 ENSMUSP00000077019 TRANSLATION protein_coding - CCDS26448.1 1 1007.0 4.0 7.13 4.0 169.9 0.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000021413 Prpf4b ENSMUST00000221077 ENSMUSP00000152545 TRANSLATION nonsense_mediated_decay start - 3 70.0 3.0 0.02 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021413 Prpf4b ENSMUST00000221087 - NO_TRANSLATION retained_intron ENSMUSG00000021413 Prpf4b ENSMUST00000221156 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021413 Prpf4b ENSMUST00000223228 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021413 Prpf4b ENSMUST00000222509 ENSMUSP00000152654 TRANSLATION nonsense_mediated_decay - CCDS26448.1 2 1007.0 4.0 7.13 4.0 169.9 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000021413 Prpf4b ENSMUST00000220965 ENSMUSP00000152349 TRANSLATION nonsense_mediated_decay start - 2 393.0 4.0 4.38 0.0 103.1 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000021413 Prpf4b ENSMUST00000222834 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021413 Prpf4b ENSMUST00000221639 - NO_TRANSLATION retained_intron ENSMUSG00000021413 Prpf4b ENSMUST00000221784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042590 Ipo11 ENSMUST00000191312 - NO_TRANSLATION retained_intron ENSMUSG00000042590 Ipo11 ENSMUST00000186033 ENSMUSP00000140046 TRANSLATION protein_coding - - 5 984.0 0.0 7.3605 33.3 66.1 0.0 -3,-6 0.8273 13 11.02 ALTERNATIVE:1 ENSMUSG00000042590 Ipo11 ENSMUST00000186005 - NO_TRANSLATION retained_intron ENSMUSG00000042590 Ipo11 ENSMUST00000190794 - NO_TRANSLATION retained_intron ENSMUSG00000042590 Ipo11 ENSMUST00000185993 - NO_TRANSLATION retained_intron ENSMUSG00000042590 Ipo11 ENSMUST00000080856 ENSMUSP00000079667 TRANSLATION protein_coding - CCDS36776.1 1 975.0 0.0 7.6905 36.1 66.1 0.0 -3,-6 1.0 14 12.0 PRINCIPAL:3 ENSMUSG00000042590 Ipo11 ENSMUST00000190801 ENSMUSP00000140839 TRANSLATION nonsense_mediated_decay start - 5 88.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021510 Zfp729a ENSMUST00000225511 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021510 Zfp729a ENSMUST00000225608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021510 Zfp729a ENSMUST00000012314 ENSMUSP00000012314 TRANSLATION protein_coding - CCDS26617.1 1 973.0 114.0 0.6 0.0 525.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000021510 Zfp729a ENSMUST00000224548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052551 Adarb2 ENSMUST00000223223 - NO_TRANSLATION retained_intron ENSMUSG00000052551 Adarb2 ENSMUST00000123187 ENSMUSP00000120757 TRANSLATION protein_coding - CCDS70428.1 1 701.0 14.0 6.264 0.0 390.9 0.0 -4,-2 0.0224 - 10.044 MINOR ENSMUSG00000052551 Adarb2 ENSMUST00000139438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052551 Adarb2 ENSMUST00000064473 ENSMUSP00000064775 TRANSLATION protein_coding - CCDS26231.1 1 745.0 20.0 7.014 7.2 431.8 0.0 -4,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000052551 Adarb2 ENSMUST00000223148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052551 Adarb2 ENSMUST00000135574 ENSMUSP00000115148 TRANSLATION nonsense_mediated_decay - CCDS26231.1 5 745.0 20.0 7.014 7.2 431.8 0.0 -4,-2 1.0 - -2.0 MINOR ENSMUSG00000069259 Prl6a1 ENSMUST00000091680 ENSMUSP00000089269 TRANSLATION protein_coding - CCDS26395.1 1 230.0 0.0 2.44 0.3 211.0 0.0 0,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000069259 Prl6a1 ENSMUST00000091679 ENSMUSP00000089268 TRANSLATION protein_coding - - 5 235.0 0.0 2.44 0.0 211.0 0.0 -4,-6 0.0901 - 8.0 ALTERNATIVE:2 ENSMUSG00000074832 Zfp998 ENSMUST00000173583 ENSMUSP00000134048 TRANSLATION protein_coding - CCDS70474.1 1 95.0 2.0 1.75 0.0 76.9 0.0 -4,-5 0.0091 - 3.816 MINOR ENSMUSG00000074832 Zfp998 ENSMUST00000091541 ENSMUSP00000089126 TRANSLATION protein_coding - - 5 95.0 2.0 1.75 0.0 76.9 0.0 -4,-5 0.0 - 3.816 MINOR ENSMUSG00000074832 Zfp998 ENSMUST00000172688 ENSMUSP00000153674 TRANSLATION protein_coding start - 1 42.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000074832 Zfp998 ENSMUST00000172579 ENSMUSP00000134352 TRANSLATION protein_coding - CCDS84031.1 3 464.0 56.0 2.75 0.1 327.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000042426 Dhx29 ENSMUST00000038574 ENSMUSP00000035244 TRANSLATION protein_coding - CCDS26779.1 1 1365.0 9.0 10.325 9.1 199.7 0.0 -4,-1 1.0 34 21.0 PRINCIPAL:1 ENSMUSG00000042426 Dhx29 ENSMUST00000226022 - NO_TRANSLATION retained_intron ENSMUSG00000042426 Dhx29 ENSMUST00000223866 - NO_TRANSLATION retained_intron ENSMUSG00000042426 Dhx29 ENSMUST00000224176 ENSMUSP00000153182 TRANSLATION nonsense_mediated_decay - - - 272.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0016 6 -2.0 MINOR ENSMUSG00000055360 Prl2c5 ENSMUST00000151144 ENSMUSP00000117522 TRANSLATION protein_coding - - 2 179.0 0.0 2.2 0.0 173.2 0.0 3,-2 0.0036 - 5.544 MINOR ENSMUSG00000055360 Prl2c5 ENSMUST00000021778 ENSMUSP00000021778 TRANSLATION protein_coding - CCDS26242.1 1 222.0 0.0 2.38 0.1 239.5 0.0 3,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000055360 Prl2c5 ENSMUST00000126540 ENSMUSP00000115024 TRANSLATION protein_coding - CCDS79164.1 1 225.0 0.0 2.38 0.0 239.5 0.0 1,-3 0.5233 - 8.0 ALTERNATIVE:2 ENSMUSG00000055360 Prl2c5 ENSMUST00000143335 - NO_TRANSLATION retained_intron ENSMUSG00000074865 Zfp934 ENSMUST00000222746 ENSMUSP00000152804 TRANSLATION protein_coding - - 1 159.0 0.0 2.98 0.0 75.9 0.0 -4,-5 0.0 - 2.178 MINOR ENSMUSG00000074865 Zfp934 ENSMUST00000221303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074865 Zfp934 ENSMUST00000222429 ENSMUSP00000152461 TRANSLATION protein_coding - - 3 100.0 0.0 1.15 0.0 82.3 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000074865 Zfp934 ENSMUST00000221279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074865 Zfp934 ENSMUST00000220648 ENSMUSP00000152492 TRANSLATION protein_coding - - 5 441.0 50.0 3.89 0.1 270.9 0.0 -4,-5 0.0681 - 11.454 MINOR ENSMUSG00000074865 Zfp934 ENSMUST00000101547 ENSMUSP00000099083 TRANSLATION protein_coding - - 5 473.0 50.0 4.89 0.1 346.7 0.0 -4,-5 0.8005 - 18.0 PRINCIPAL:1 ENSMUSG00000074865 Zfp934 ENSMUST00000222852 ENSMUSP00000152181 TRANSLATION protein_coding stop - 3 125.0 2.0 2.956 0.0 75.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074865 Zfp934 ENSMUST00000221250 ENSMUSP00000152631 TRANSLATION nonsense_mediated_decay - - 5 61.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000074865 Zfp934 ENSMUST00000221494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021416 Eci3 ENSMUST00000021853 ENSMUSP00000021853 TRANSLATION protein_coding - CCDS26449.1 1 317.0 17.0 7.3 0.0 164.8 0.0 -4,-7 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000021416 Eci3 ENSMUST00000164155 ENSMUSP00000132701 TRANSLATION protein_coding stop - 5 260.0 17.0 6.3 0.0 155.3 0.0 -4,-7 0.0061 5 -2.0 MINOR ENSMUSG00000061829 Vmn1r214 ENSMUST00000074252 ENSMUSP00000073868 TRANSLATION protein_coding - CCDS26329.1 - 367.0 0.0 0.0 0.0 106.0 3.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061829 Vmn1r214 ENSMUST00000227652 ENSMUSP00000153823 TRANSLATION protein_coding - CCDS26329.1 - 367.0 0.0 0.0 0.0 106.0 3.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061829 Vmn1r214 ENSMUST00000227236 ENSMUSP00000153728 TRANSLATION protein_coding - CCDS26329.1 - 367.0 0.0 0.0 0.0 106.0 3.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000051627 H1f4 ENSMUST00000062045 ENSMUSP00000057308 TRANSLATION protein_coding - CCDS26355.1 - 219.0 0.0 0.6 0.0 81.9 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000062737 Prl3d2 ENSMUST00000164964 ENSMUSP00000130458 TRANSLATION protein_coding - - 1 224.0 0.0 2.4 0.4 234.6 0.0 4,-1 0.8273 - 8.0 ALTERNATIVE:2 ENSMUSG00000062737 Prl3d2 ENSMUST00000080755 ENSMUSP00000079579 TRANSLATION protein_coding - CCDS49222.1 5 223.0 0.0 2.4 0.4 234.6 0.0 4,-1 0.859 - 8.0 PRINCIPAL:4 ENSMUSG00000055560 Zfp459 ENSMUST00000224113 ENSMUSP00000153407 TRANSLATION protein_coding stop - - 166.0 8.0 4.25 0.0 125.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055560 Zfp459 ENSMUST00000223644 ENSMUSP00000153490 TRANSLATION protein_coding stop - - 111.0 6.0 2.5 0.0 19.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055560 Zfp459 ENSMUST00000056470 ENSMUSP00000063027 TRANSLATION protein_coding - CCDS26615.1 1 267.0 15.0 5.05 0.0 169.0 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000055560 Zfp459 ENSMUST00000224496 - NO_TRANSLATION retained_intron ENSMUSG00000109561 Ankrd31 ENSMUST00000207464 ENSMUSP00000146751 TRANSLATION protein_coding - - 5 1545.0 0.0 4.332 0.0 106.6 0.0 -4,-5 0.3122 - 6.002 MINOR ENSMUSG00000109561 Ankrd31 ENSMUST00000208004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109561 Ankrd31 ENSMUST00000208758 ENSMUSP00000146720 TRANSLATION protein_coding - - 5 1765.0 0.0 5.332 0.0 89.5 0.0 -4,-5 0.5334 - 7.2 PRINCIPAL:1 ENSMUSG00000044792 Isca1 ENSMUST00000224636 - NO_TRANSLATION retained_intron ENSMUSG00000044792 Isca1 ENSMUST00000225877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044792 Isca1 ENSMUST00000225795 - NO_TRANSLATION retained_intron ENSMUSG00000044792 Isca1 ENSMUST00000160628 - NO_TRANSLATION retained_intron ENSMUSG00000044792 Isca1 ENSMUST00000225284 - NO_TRANSLATION retained_intron ENSMUSG00000044792 Isca1 ENSMUST00000057115 ENSMUSP00000054858 TRANSLATION protein_coding - CCDS26578.1 1 129.0 4.0 2.5 30.4 0.0 0.0 -4,0 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044792 Isca1 ENSMUST00000225850 ENSMUSP00000153175 TRANSLATION nonsense_mediated_decay - - - 49.0 0.0 0.5 0.0 0.0 0.0 -4,0 0.0115 - -2.0 MINOR ENSMUSG00000021319 Sfrp4 ENSMUST00000222992 ENSMUSP00000152850 TRANSLATION protein_coding - - 5 193.0 0.0 0.0 0.0 54.8 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000021319 Sfrp4 ENSMUST00000221810 ENSMUSP00000152511 TRANSLATION protein_coding start - 5 202.0 0.0 0.75 0.0 52.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021319 Sfrp4 ENSMUST00000222464 ENSMUSP00000152498 TRANSLATION protein_coding - - 1 365.0 0.0 1.75 0.0 153.5 0.0 4,-2 0.1057 1 11.88 MINOR ENSMUSG00000021319 Sfrp4 ENSMUST00000002883 ENSMUSP00000002883 TRANSLATION protein_coding - CCDS26261.1 1 351.0 0.0 1.75 8.4 155.5 0.0 4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000069117 Rps18-ps6 ENSMUST00000074072 ENSMUSP00000126892 TRANSLATION protein_coding - - - 152.0 0.0 1.0 26.7 185.3 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000074871 Ctsm ENSMUST00000099451 ENSMUSP00000097050 TRANSLATION protein_coding - CCDS36694.1 1 333.0 4.0 7.38 10.7 285.8 0.0 2,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000074871 Ctsm ENSMUST00000223778 ENSMUSP00000153101 TRANSLATION protein_coding - CCDS36694.1 - 333.0 4.0 7.38 10.7 285.8 0.0 2,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000074871 Ctsm ENSMUST00000225268 ENSMUSP00000153564 TRANSLATION protein_coding start - - 39.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000074871 Ctsm ENSMUST00000225965 ENSMUSP00000152912 TRANSLATION protein_coding start - - 87.0 0.0 2.284 0.0 46.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034488 Edil3 ENSMUST00000133761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034488 Edil3 ENSMUST00000140625 - NO_TRANSLATION retained_intron ENSMUSG00000034488 Edil3 ENSMUST00000137921 - NO_TRANSLATION retained_intron ENSMUSG00000034488 Edil3 ENSMUST00000081769 ENSMUSP00000080462 TRANSLATION protein_coding - CCDS26669.1 1 480.0 18.0 8.97 19.2 297.7 0.0 1,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000034488 Edil3 ENSMUST00000118731 ENSMUSP00000112829 TRANSLATION protein_coding - - 1 384.0 18.0 6.97 0.0 186.9 0.0 1,-2 0.0068 4 7.998 MINOR ENSMUSG00000034488 Edil3 ENSMUST00000043111 ENSMUSP00000044652 TRANSLATION protein_coding - CCDS26670.1 1 470.0 18.0 8.64 12.8 297.7 0.0 1,-2 0.9168 9 19.932 MINOR ENSMUSG00000034488 Edil3 ENSMUST00000134241 - NO_TRANSLATION retained_intron ENSMUSG00000034488 Edil3 ENSMUST00000153974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005320 Fgfr4 ENSMUST00000005452 ENSMUSP00000005452 TRANSLATION protein_coding - CCDS26540.1 1 799.0 19.0 11.55 0.4 430.1 0.0 3,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000005320 Fgfr4 ENSMUST00000162167 - NO_TRANSLATION retained_intron ENSMUSG00000005320 Fgfr4 ENSMUST00000162967 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021342 Prl ENSMUST00000110369 ENSMUSP00000105998 TRANSLATION protein_coding - CCDS26389.1 1 228.0 0.0 3.64 11.4 190.4 0.0 1,-2 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000021342 Prl ENSMUST00000018061 ENSMUSP00000018061 TRANSLATION protein_coding - - 1 225.0 0.0 3.64 8.2 190.4 0.0 2,-2 0.7555 - 10.076 ALTERNATIVE:1 ENSMUSG00000021342 Prl ENSMUST00000224228 ENSMUSP00000153245 TRANSLATION protein_coding - - - 226.0 0.0 3.64 9.4 190.4 0.0 2,-2 0.7906 - 10.424 ALTERNATIVE:1 ENSMUSG00000021342 Prl ENSMUST00000224627 - NO_TRANSLATION retained_intron ENSMUSG00000039182 AW209491 ENSMUST00000178289 ENSMUSP00000136376 TRANSLATION protein_coding - CCDS26250.1 1 421.0 0.0 0.0 12.3 384.4 0.0 -4,-6 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000039182 AW209491 ENSMUST00000222052 ENSMUSP00000152180 TRANSLATION protein_coding stop - 2 117.0 0.0 0.0 0.0 74.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039182 AW209491 ENSMUST00000038690 ENSMUSP00000041523 TRANSLATION protein_coding - CCDS26250.1 1 421.0 0.0 0.0 12.3 384.4 0.0 -4,-6 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000021591 Glrx ENSMUST00000022082 ENSMUSP00000022082 TRANSLATION protein_coding - CCDS26651.1 1 107.0 12.0 2.33 28.6 61.1 0.0 -4,-5 1.0 5 21.91 PRINCIPAL:1 ENSMUSG00000021591 Glrx ENSMUST00000222530 - NO_TRANSLATION retained_intron ENSMUSG00000021591 Glrx ENSMUST00000223120 ENSMUSP00000152802 TRANSLATION protein_coding - CCDS26651.1 5 107.0 12.0 2.33 28.6 61.1 0.0 -4,-5 1.0 5 21.91 PRINCIPAL:1 ENSMUSG00000021591 Glrx ENSMUST00000220523 ENSMUSP00000152829 TRANSLATION protein_coding - - 3 84.0 10.0 1.495 0.0 62.0 0.0 -4,-5 0.0126 3 14.52 MINOR ENSMUSG00000021338 Carmil1 ENSMUST00000147261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021338 Carmil1 ENSMUST00000125901 ENSMUSP00000126522 TRANSLATION nonsense_mediated_decay start - 1 932.0 0.0 9.35 0.0 351.9 0.0 -4,-7 0.0208 20 -2.0 MINOR ENSMUSG00000021338 Carmil1 ENSMUST00000110398 ENSMUSP00000106028 TRANSLATION protein_coding - CCDS79171.1 1 1332.0 0.0 22.0 1.5 379.1 0.0 -4,-5 0.5656 28 12.2 MINOR ENSMUSG00000021338 Carmil1 ENSMUST00000142171 - NO_TRANSLATION retained_intron ENSMUSG00000021338 Carmil1 ENSMUST00000136517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021338 Carmil1 ENSMUST00000144159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021338 Carmil1 ENSMUST00000125420 - NO_TRANSLATION retained_intron ENSMUSG00000021338 Carmil1 ENSMUST00000140042 ENSMUSP00000127121 TRANSLATION protein_coding stop - 3 57.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021338 Carmil1 ENSMUST00000123076 ENSMUSP00000130100 TRANSLATION protein_coding stop - 3 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0071 - -2.0 MINOR ENSMUSG00000021338 Carmil1 ENSMUST00000151566 ENSMUSP00000120971 TRANSLATION protein_coding start - 1 173.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021338 Carmil1 ENSMUST00000072889 ENSMUSP00000072662 TRANSLATION protein_coding - CCDS36621.1 1 1374.0 0.0 22.0 6.0 379.1 0.0 -4,-5 1.0 29 14.0 PRINCIPAL:1 ENSMUSG00000021338 Carmil1 ENSMUST00000128416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074826 Ramacl ENSMUST00000099412 ENSMUSP00000133648 TRANSLATION protein_coding - CCDS56889.1 1 103.0 0.0 0.6 0.0 73.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074826 Ramacl ENSMUST00000168767 ENSMUSP00000133647 TRANSLATION protein_coding - CCDS56889.1 1 103.0 0.0 0.6 0.0 73.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000004344 Gpx5 ENSMUST00000110491 ENSMUSP00000106117 TRANSLATION protein_coding - CCDS26270.1 1 221.0 0.0 4.0 8.1 144.3 0.0 3,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000058883 Zfp708 ENSMUST00000190566 ENSMUSP00000139928 TRANSLATION protein_coding - CCDS79206.1 1 496.0 64.0 1.32 0.0 342.3 0.0 -4,-7 0.3126 - 13.4 MINOR ENSMUSG00000058883 Zfp708 ENSMUST00000109742 ENSMUSP00000105364 TRANSLATION protein_coding - CCDS49298.1 1 529.0 64.0 1.32 0.1 413.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000058883 Zfp708 ENSMUST00000109743 ENSMUSP00000105365 TRANSLATION protein_coding - - 2 541.0 64.0 1.32 0.1 413.9 0.0 -4,-5 0.23 - 14.0 ALTERNATIVE:2 ENSMUSG00000050244 Heatr1 ENSMUST00000223324 ENSMUSP00000152797 TRANSLATION protein_coding stop - 3 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0304 - -2.0 MINOR ENSMUSG00000050244 Heatr1 ENSMUST00000222091 ENSMUSP00000152435 TRANSLATION nonsense_mediated_decay start - 2 744.0 0.0 1.646 0.0 146.9 0.0 0,-4 0.0073 9 -2.0 MINOR ENSMUSG00000050244 Heatr1 ENSMUST00000059270 ENSMUSP00000054084 TRANSLATION protein_coding - CCDS26240.1 5 2143.0 0.0 4.796 9.6 238.5 0.0 -4,-7 1.0 31 15.0 PRINCIPAL:1 ENSMUSG00000050244 Heatr1 ENSMUST00000221046 ENSMUSP00000152410 TRANSLATION nonsense_mediated_decay - - 1 344.0 0.0 2.3 0.0 51.4 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000050244 Heatr1 ENSMUST00000221746 - NO_TRANSLATION retained_intron ENSMUSG00000050244 Heatr1 ENSMUST00000221051 - NO_TRANSLATION retained_intron ENSMUSG00000050244 Heatr1 ENSMUST00000221616 - NO_TRANSLATION retained_intron ENSMUSG00000050244 Heatr1 ENSMUST00000222817 - NO_TRANSLATION retained_intron ENSMUSG00000021730 Hcn1 ENSMUST00000006991 ENSMUSP00000006991 TRANSLATION protein_coding - CCDS26793.1 1 910.0 13.0 6.6 0.1 211.1 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000021730 Hcn1 ENSMUST00000207599 - NO_TRANSLATION retained_intron ENSMUSG00000034334 Fam151b ENSMUST00000040106 ENSMUSP00000045024 TRANSLATION protein_coding - CCDS49327.1 1 279.0 0.0 5.698 0.0 329.7 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000034334 Fam151b ENSMUST00000225299 ENSMUSP00000153204 TRANSLATION nonsense_mediated_decay - - - 64.0 0.0 1.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078302 Foxd1 ENSMUST00000105098 ENSMUSP00000100725 TRANSLATION protein_coding - CCDS36759.1 - 456.0 0.0 0.4 0.0 130.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000101972 H3c11 ENSMUST00000189457 ENSMUSP00000139663 TRANSLATION protein_coding - CCDS26296.1 - 136.0 0.0 1.0 20.2 183.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021440 Cts7 ENSMUST00000224773 ENSMUSP00000153003 TRANSLATION nonsense_mediated_decay - - - 87.0 0.0 1.4 0.0 33.9 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000021440 Cts7 ENSMUST00000225321 ENSMUSP00000153508 TRANSLATION protein_coding - - - 302.0 4.0 4.84 0.0 236.4 0.0 4,-1 0.0112 - 11.284 MINOR ENSMUSG00000021440 Cts7 ENSMUST00000021892 ENSMUSP00000021892 TRANSLATION protein_coding - CCDS26588.1 1 331.0 4.0 5.84 1.4 281.7 0.0 4,-1 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000021440 Cts7 ENSMUST00000224986 ENSMUSP00000153603 TRANSLATION protein_coding - CCDS26588.1 - 331.0 4.0 5.84 1.4 281.7 0.0 4,-1 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000021375 Kif13a ENSMUST00000056978 ENSMUSP00000055304 TRANSLATION protein_coding - CCDS36652.1 1 1749.0 11.0 14.46 0.0 646.7 0.0 -4,-6 1.0 28 18.0 PRINCIPAL:1 ENSMUSG00000021375 Kif13a ENSMUST00000224457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021375 Kif13a ENSMUST00000225591 ENSMUSP00000153614 TRANSLATION protein_coding stop - - 1041.0 8.0 13.23 0.0 548.8 0.0 -4,-5 0.0124 18 -2.0 MINOR ENSMUSG00000021375 Kif13a ENSMUST00000223881 ENSMUSP00000153657 TRANSLATION protein_coding start - - 801.0 0.0 0.0 0.0 105.5 0.0 -4,-7 0.0117 10 -2.0 MINOR ENSMUSG00000021375 Kif13a ENSMUST00000238722 ENSMUSP00000158831 TRANSLATION protein_coding start/stop - - 167.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021375 Kif13a ENSMUST00000224756 ENSMUSP00000153385 TRANSLATION protein_coding start/stop - - 229.0 0.0 0.0 0.0 32.2 0.0 -4,-5 0.0002 3 -2.0 MINOR ENSMUSG00000021375 Kif13a ENSMUST00000225836 ENSMUSP00000153536 TRANSLATION protein_coding start - - 164.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021375 Kif13a ENSMUST00000225904 - NO_TRANSLATION retained_intron ENSMUSG00000021375 Kif13a ENSMUST00000224923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021375 Kif13a ENSMUST00000223856 ENSMUSP00000152982 TRANSLATION protein_coding start/stop - - 125.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000076749 Trgc1 ENSMUST00000103558 ENSMUSP00000100338 TRANSLATION TR_C_gene start - - 172.0 0.0 1.75 0.0 38.0 0.0 -4,-5 0.7438 - -2.0 PRINCIPAL:1 ENSMUSG00000069299 Vmn1r188 ENSMUST00000091739 ENSMUSP00000089333 TRANSLATION protein_coding - CCDS26309.1 - 308.0 0.0 0.0 0.7 127.4 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069299 Vmn1r188 ENSMUST00000228243 ENSMUSP00000154654 TRANSLATION protein_coding - CCDS26309.1 - 308.0 0.0 0.0 0.7 127.4 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069299 Vmn1r188 ENSMUST00000226680 ENSMUSP00000153995 TRANSLATION protein_coding - CCDS26309.1 - 308.0 0.0 0.0 0.7 127.4 5.0 -2,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069307 H2bc23 ENSMUST00000091749 ENSMUSP00000089343 TRANSLATION protein_coding - CCDS49213.1 1 134.0 0.0 1.165 0.0 92.7 0.0 -4,-5 0.6768 - 12.0 PRINCIPAL:1 ENSMUSG00000069307 H2bc23 ENSMUST00000110469 ENSMUSP00000106095 TRANSLATION nonsense_mediated_decay - CCDS84010.1 5 126.0 0.0 1.0 12.5 92.7 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000049625 Tifab ENSMUST00000225063 ENSMUSP00000152976 TRANSLATION protein_coding - CCDS26558.1 - 147.0 0.0 1.0 0.1 24.4 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000049625 Tifab ENSMUST00000169652 ENSMUSP00000131162 TRANSLATION protein_coding - CCDS26558.1 1 147.0 0.0 1.0 0.1 24.4 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000095909 Zfp997 ENSMUST00000238623 ENSMUSP00000158820 TRANSLATION protein_coding - - - 604.0 76.0 2.24 0.1 424.2 0.0 -4,-5 0.8109 - 18.0 PRINCIPAL:1 ENSMUSG00000095909 Zfp997 ENSMUST00000238355 ENSMUSP00000158641 TRANSLATION protein_coding - - - 64.0 0.0 1.75 0.4 79.5 0.0 -4,-5 0.0 - 4.686 MINOR ENSMUSG00000061991 H2ac10 ENSMUST00000073261 ENSMUSP00000072989 TRANSLATION protein_coding - CCDS26341.1 - 130.0 0.0 1.0 12.5 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054021 Sirt5 ENSMUST00000222489 - NO_TRANSLATION retained_intron ENSMUSG00000054021 Sirt5 ENSMUST00000220576 ENSMUSP00000152740 TRANSLATION protein_coding - - 5 289.0 29.0 6.75 0.9 162.2 0.0 -4,0 0.1159 10 15.168 MINOR ENSMUSG00000054021 Sirt5 ENSMUST00000221515 ENSMUSP00000152526 TRANSLATION protein_coding - - 5 350.0 31.0 6.75 0.0 162.2 0.0 -4,0 0.0311 10 16.5 MINOR ENSMUSG00000054021 Sirt5 ENSMUST00000066804 ENSMUSP00000071048 TRANSLATION protein_coding - CCDS26478.1 1 310.0 31.0 7.5 9.8 162.2 0.0 -4,0 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000054021 Sirt5 ENSMUST00000220874 - NO_TRANSLATION retained_intron ENSMUSG00000054021 Sirt5 ENSMUST00000222106 ENSMUSP00000152763 TRANSLATION protein_coding start - 5 135.0 14.0 3.764 0.0 46.3 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000054021 Sirt5 ENSMUST00000221955 - NO_TRANSLATION retained_intron ENSMUSG00000054021 Sirt5 ENSMUST00000223194 ENSMUSP00000152796 TRANSLATION protein_coding - CCDS26478.1 1 310.0 31.0 7.5 9.8 162.2 0.0 -4,0 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000054021 Sirt5 ENSMUST00000220645 ENSMUSP00000152760 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000054021 Sirt5 ENSMUST00000221481 ENSMUSP00000152640 TRANSLATION protein_coding - - 5 289.0 29.0 6.75 0.9 162.2 0.0 -4,0 0.1159 10 15.168 MINOR ENSMUSG00000054021 Sirt5 ENSMUST00000220458 ENSMUSP00000152668 TRANSLATION protein_coding stop - 3 95.0 12.0 1.5 0.0 35.4 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000021725 Parp8 ENSMUST00000223833 - NO_TRANSLATION retained_intron ENSMUSG00000021725 Parp8 ENSMUST00000223949 ENSMUSP00000152911 TRANSLATION protein_coding - - - 852.0 0.0 6.31 18.5 50.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000021725 Parp8 ENSMUST00000225344 ENSMUSP00000153307 TRANSLATION nonsense_mediated_decay - - - 108.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000021725 Parp8 ENSMUST00000226107 ENSMUSP00000153188 TRANSLATION nonsense_mediated_decay - - - 253.0 0.0 2.63 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021725 Parp8 ENSMUST00000224157 - NO_TRANSLATION retained_intron ENSMUSG00000021725 Parp8 ENSMUST00000225974 ENSMUSP00000153169 TRANSLATION nonsense_mediated_decay - - - 97.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000021725 Parp8 ENSMUST00000022239 ENSMUSP00000022239 TRANSLATION protein_coding - CCDS36790.1 5 891.0 0.0 6.31 1.6 50.0 0.0 -4,-7 0.5575 1 12.136 MINOR ENSMUSG00000054266 Serpinb9d ENSMUST00000067198 ENSMUSP00000067710 TRANSLATION protein_coding - CCDS26434.1 1 377.0 0.0 5.2 12.5 426.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069301 H2ac11 ENSMUST00000091741 ENSMUSP00000089335 TRANSLATION protein_coding - CCDS26307.1 - 130.0 0.0 1.0 11.0 135.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033781 Asb13 ENSMUST00000141147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033781 Asb13 ENSMUST00000156595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033781 Asb13 ENSMUST00000141967 - NO_TRANSLATION retained_intron ENSMUSG00000033781 Asb13 ENSMUST00000042288 ENSMUSP00000046476 TRANSLATION protein_coding - CCDS36582.1 1 278.0 0.0 5.2 21.2 153.9 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021567 Nkd2 ENSMUST00000222004 ENSMUSP00000152231 TRANSLATION protein_coding stop - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0155 - -2.0 MINOR ENSMUSG00000021567 Nkd2 ENSMUST00000022051 ENSMUSP00000022051 TRANSLATION protein_coding - CCDS26636.1 1 461.0 5.0 1.0 0.0 0.0 0.0 -4,-7 1.0 - 11.0 PRINCIPAL:2 ENSMUSG00000021567 Nkd2 ENSMUST00000138899 - NO_TRANSLATION retained_intron ENSMUSG00000021567 Nkd2 ENSMUST00000221679 - NO_TRANSLATION retained_intron ENSMUSG00000021567 Nkd2 ENSMUST00000118096 ENSMUSP00000113794 TRANSLATION protein_coding - CCDS84036.1 1 449.0 5.0 1.0 0.0 0.0 0.0 -4,-7 0.4691 - 11.0 ALTERNATIVE:2 ENSMUSG00000043631 Ecm2 ENSMUST00000222592 - NO_TRANSLATION retained_intron ENSMUSG00000043631 Ecm2 ENSMUST00000051504 ENSMUSP00000060402 TRANSLATION protein_coding - CCDS26502.1 1 670.0 0.0 7.0 0.0 167.5 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000095514 D13Ertd608e ENSMUST00000179131 ENSMUSP00000136381 TRANSLATION protein_coding start/stop - 5 139.0 0.0 0.0 0.0 251.3 0.0 -4,-5 0.0079 - -2.0 MINOR ENSMUSG00000095514 D13Ertd608e ENSMUST00000195797 ENSMUSP00000142107 TRANSLATION protein_coding - - 1 151.0 0.0 0.0 0.0 264.8 0.0 -4,-5 0.7445 - 6.0 PRINCIPAL:1 ENSMUSG00000021460 Auh ENSMUST00000119311 ENSMUSP00000113659 TRANSLATION protein_coding - - 1 115.0 4.0 2.23 0.0 30.1 0.0 -1,3 0.0 1 0.0 MINOR ENSMUSG00000021460 Auh ENSMUST00000132598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021460 Auh ENSMUST00000137064 ENSMUSP00000121852 TRANSLATION nonsense_mediated_decay start - 5 239.0 17.0 6.2 0.0 169.0 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000021460 Auh ENSMUST00000133906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021460 Auh ENSMUST00000142515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021460 Auh ENSMUST00000021913 ENSMUSP00000021913 TRANSLATION protein_coding - CCDS26518.1 1 314.0 20.0 7.23 0.3 199.0 0.0 -1,3 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000021460 Auh ENSMUST00000110031 ENSMUSP00000105658 TRANSLATION protein_coding - - 1 158.0 4.0 2.23 0.0 30.1 0.0 -1,3 0.0 1 0.0 MINOR ENSMUSG00000021460 Auh ENSMUST00000153329 - NO_TRANSLATION retained_intron ENSMUSG00000021460 Auh ENSMUST00000123599 ENSMUSP00000116179 TRANSLATION protein_coding start/stop - 3 219.0 20.0 5.08 0.0 158.6 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000021460 Auh ENSMUST00000128544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021460 Auh ENSMUST00000151469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021460 Auh ENSMUST00000120535 ENSMUSP00000112427 TRANSLATION protein_coding - - 1 144.0 11.0 2.98 0.0 46.8 0.0 -1,3 0.0 4 0.0 MINOR ENSMUSG00000021460 Auh ENSMUST00000128380 - NO_TRANSLATION retained_intron ENSMUSG00000021460 Auh ENSMUST00000230563 ENSMUSP00000155837 TRANSLATION protein_coding start - - 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000042655 Shisal2b ENSMUST00000223913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042655 Shisal2b ENSMUST00000225969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042655 Shisal2b ENSMUST00000043061 ENSMUSP00000042302 TRANSLATION protein_coding - CCDS26754.1 1 158.0 0.0 2.0 7.9 32.3 0.0 -4,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000021595 Nsun2 ENSMUST00000176485 ENSMUSP00000135455 TRANSLATION protein_coding - - 5 722.0 17.0 3.79 0.0 129.7 0.0 -4,-7 0.1051 18 11.802 ALTERNATIVE:2 ENSMUSG00000021595 Nsun2 ENSMUST00000022087 ENSMUSP00000022087 TRANSLATION protein_coding - - 1 691.0 17.0 3.89 0.0 129.7 0.0 -4,-5 0.7747 17 12.0 PRINCIPAL:2 ENSMUSG00000021595 Nsun2 ENSMUST00000148115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021595 Nsun2 ENSMUST00000136891 - NO_TRANSLATION retained_intron ENSMUSG00000021595 Nsun2 ENSMUST00000143716 ENSMUSP00000134962 TRANSLATION protein_coding stop - 3 72.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021595 Nsun2 ENSMUST00000136932 - NO_TRANSLATION retained_intron ENSMUSG00000021595 Nsun2 ENSMUST00000109699 ENSMUSP00000105321 TRANSLATION protein_coding - CCDS36722.2 1 757.0 17.0 3.89 0.3 129.7 0.0 -4,-7 0.3067 19 12.0 ALTERNATIVE:2 ENSMUSG00000021595 Nsun2 ENSMUST00000127854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076755 Trgv1 ENSMUST00000103564 ENSMUSP00000100342 TRANSLATION TR_V_gene stop - - 115.0 0.0 0.75 0.0 54.6 0.0 2,-3 0.8292 - -2.0 PRINCIPAL:1 ENSMUSG00000021311 Mtr ENSMUST00000099856 ENSMUSP00000097442 TRANSLATION protein_coding - CCDS36591.1 1 1253.0 27.0 26.4 1.5 843.1 0.0 -4,-5 1.0 31 19.0 PRINCIPAL:1 ENSMUSG00000021311 Mtr ENSMUST00000221290 ENSMUSP00000152579 TRANSLATION nonsense_mediated_decay - - 1 222.0 0.0 2.2 0.0 68.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021311 Mtr ENSMUST00000220473 - NO_TRANSLATION retained_intron ENSMUSG00000021311 Mtr ENSMUST00000221190 - NO_TRANSLATION retained_intron ENSMUSG00000099269 Calm5 ENSMUST00000183198 ENSMUSP00000139172 TRANSLATION protein_coding - - - 117.0 13.0 0.6 0.0 83.6 0.0 -4,-5 0.0021 - 11.592 MINOR ENSMUSG00000099269 Calm5 ENSMUST00000184271 ENSMUSP00000139342 TRANSLATION protein_coding - CCDS59581.1 1 140.0 18.0 1.1 0.0 88.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000069289 Vmn1r203 ENSMUST00000228889 ENSMUSP00000154399 TRANSLATION protein_coding - CCDS26321.1 - 311.0 0.0 0.0 0.0 115.7 5.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069289 Vmn1r203 ENSMUST00000091729 ENSMUSP00000089322 TRANSLATION protein_coding - CCDS26321.1 - 311.0 0.0 0.0 0.0 115.7 5.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000069289 Vmn1r203 ENSMUST00000227520 ENSMUSP00000153892 TRANSLATION protein_coding - CCDS26321.1 - 311.0 0.0 0.0 0.0 115.7 5.0 -3,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000021681 Aggf1 ENSMUST00000022189 ENSMUSP00000022189 TRANSLATION protein_coding - CCDS26697.1 1 711.0 0.0 1.166 0.0 98.2 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000021681 Aggf1 ENSMUST00000161671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005583 Mef2c ENSMUST00000197146 ENSMUSP00000143227 TRANSLATION protein_coding - CCDS84043.1 1 442.0 0.0 3.18 18.2 57.2 0.0 -4,-6 0.7345 4 9.98 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000197722 ENSMUSP00000142456 TRANSLATION protein_coding - - 5 400.0 0.0 3.18 0.0 57.2 0.0 -4,-6 0.0012 4 7.1 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000197681 ENSMUSP00000143420 TRANSLATION protein_coding - CCDS84043.1 5 442.0 0.0 3.18 18.2 57.2 0.0 -4,-6 0.7345 4 9.98 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000196207 ENSMUSP00000143221 TRANSLATION protein_coding stop - 5 120.0 0.0 3.03 0.0 27.5 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000200138 ENSMUSP00000142715 TRANSLATION protein_coding start - 5 249.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000198360 ENSMUSP00000143058 TRANSLATION nonsense_mediated_decay start - 2 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000199262 - NO_TRANSLATION retained_intron ENSMUSG00000005583 Mef2c ENSMUST00000200394 ENSMUSP00000143598 TRANSLATION protein_coding stop - 5 161.0 0.0 3.18 0.0 57.2 0.0 -4,-6 0.0004 1 -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000200123 ENSMUSP00000142833 TRANSLATION protein_coding stop - 3 23.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000163888 ENSMUSP00000132547 TRANSLATION protein_coding - - 5 484.0 0.0 3.63 17.3 75.3 0.0 -4,-6 0.8137 4 10.728 ALTERNATIVE:1 ENSMUSG00000005583 Mef2c ENSMUST00000195904 ENSMUSP00000143339 TRANSLATION protein_coding stop - 3 169.0 0.0 3.18 0.0 57.2 0.0 -4,-6 0.0004 1 -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000197022 - NO_TRANSLATION retained_intron ENSMUSG00000005583 Mef2c ENSMUST00000005722 ENSMUSP00000005722 TRANSLATION protein_coding - - 5 464.0 0.0 3.03 24.9 75.3 0.0 -4,-7 0.898 4 10.8 ALTERNATIVE:1 ENSMUSG00000005583 Mef2c ENSMUST00000199105 ENSMUSP00000143212 TRANSLATION protein_coding - CCDS84042.1 5 474.0 0.0 3.18 18.2 57.2 0.0 -4,-6 0.7688 4 9.98 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000197938 ENSMUSP00000143187 TRANSLATION protein_coding stop - 5 242.0 0.0 3.03 0.0 75.3 0.0 -4,-7 0.0064 1 -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000198069 ENSMUSP00000143286 TRANSLATION protein_coding stop - 5 108.0 0.0 3.03 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000196730 ENSMUSP00000143338 TRANSLATION protein_coding stop - 5 205.0 0.0 3.03 0.0 75.3 0.0 -4,-7 0.0047 - -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000185052 ENSMUSP00000138826 TRANSLATION protein_coding - CCDS84045.1 1 472.0 0.0 3.03 22.7 75.3 0.0 -4,-7 1.0 3 10.432 ALTERNATIVE:1 ENSMUSG00000005583 Mef2c ENSMUST00000199450 ENSMUSP00000143315 TRANSLATION protein_coding - CCDS49320.1 1 466.0 0.0 3.18 18.5 57.2 0.0 -4,-6 0.7889 5 10.028 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000195984 ENSMUSP00000143611 TRANSLATION protein_coding stop - 3 194.0 0.0 3.18 0.0 57.2 0.0 -4,-6 0.0004 1 -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000199019 ENSMUSP00000143401 TRANSLATION protein_coding - CCDS84042.1 5 474.0 0.0 3.18 18.2 57.2 0.0 -4,-6 0.7688 4 9.98 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000196832 - NO_TRANSLATION retained_intron ENSMUSG00000005583 Mef2c ENSMUST00000199210 ENSMUSP00000142595 TRANSLATION protein_coding - - 5 394.0 0.0 2.58 3.4 0.0 0.0 -4,-6 0.0679 3 4.3 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000198217 ENSMUSP00000142487 TRANSLATION protein_coding - - 5 418.0 0.0 2.58 3.4 0.0 0.0 -4,-6 0.0775 4 4.3 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000199167 ENSMUSP00000142884 TRANSLATION protein_coding stop - 5 227.0 0.0 3.03 0.0 75.3 0.0 -4,-7 0.0058 - -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000199432 ENSMUSP00000142714 TRANSLATION protein_coding - CCDS84044.1 1 434.0 0.0 3.18 22.7 57.2 0.0 -4,-6 0.8074 5 10.732 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000198064 ENSMUSP00000142399 TRANSLATION protein_coding stop - 5 126.0 0.0 3.18 0.0 25.7 0.0 -4,-6 0.0002 - -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000197145 ENSMUSP00000142619 TRANSLATION protein_coding start - 5 152.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000198916 ENSMUSP00000143235 TRANSLATION protein_coding stop - 3 29.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005583 Mef2c ENSMUST00000198199 ENSMUSP00000143742 TRANSLATION protein_coding - CCDS26664.1 1 432.0 0.0 3.03 21.8 75.3 0.0 -4,-7 0.95 4 10.28 PRINCIPAL:4 ENSMUSG00000005583 Mef2c ENSMUST00000196493 ENSMUSP00000142897 TRANSLATION protein_coding stop - 5 129.0 0.0 3.18 0.0 29.8 0.0 -4,-6 0.0009 - -2.0 MINOR ENSMUSG00000021469 Msx2 ENSMUST00000021922 ENSMUSP00000021922 TRANSLATION protein_coding - CCDS26522.1 1 267.0 0.0 1.0 10.3 75.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021469 Msx2 ENSMUST00000188606 - NO_TRANSLATION retained_intron ENSMUSG00000006711 D130043K22Rik ENSMUST00000171262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006711 D130043K22Rik ENSMUST00000169411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006711 D130043K22Rik ENSMUST00000141572 ENSMUSP00000116004 TRANSLATION nonsense_mediated_decay - - 1 782.0 4.0 10.0 0.0 23.2 0.0 3,-2 0.1358 2 -2.0 MINOR ENSMUSG00000006711 D130043K22Rik ENSMUST00000006893 ENSMUSP00000006893 TRANSLATION protein_coding - CCDS36624.1 1 1081.0 4.0 14.77 0.4 22.4 0.0 3,-2 1.0 3 15.796 PRINCIPAL:1 ENSMUSG00000087370 Tmem170b ENSMUST00000221694 ENSMUSP00000152170 TRANSLATION protein_coding - - 3 75.0 0.0 1.0 0.4 64.5 1.0 -4,-7 0.0029 - 4.644 MINOR ENSMUSG00000087370 Tmem170b ENSMUST00000129449 ENSMUSP00000131144 TRANSLATION protein_coding - CCDS49248.1 5 132.0 0.0 2.0 15.8 137.1 3.0 -3,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000114470 Gm49395 ENSMUST00000225486 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000114470 Gm49395 ENSMUST00000224495 ENSMUSP00000152908 TRANSLATION nonsense_mediated_decay,RT - - - 57.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.6281 - -2.0 PRINCIPAL:1 ENSMUSG00000114470 Gm49395 ENSMUST00000225093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000114470 Gm49395 ENSMUST00000224997 ENSMUSP00000153073 TRANSLATION protein_coding,RT - - - 57.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.6281 - -2.0 PRINCIPAL:1 ENSMUSG00000093930 Hmgcs1 ENSMUST00000224188 ENSMUSP00000153064 TRANSLATION protein_coding - CCDS56901.1 - 520.0 29.0 8.25 0.0 796.2 0.0 -4,-5 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000093930 Hmgcs1 ENSMUST00000225543 ENSMUSP00000153212 TRANSLATION protein_coding stop - - 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000093930 Hmgcs1 ENSMUST00000179869 ENSMUSP00000136944 TRANSLATION protein_coding - CCDS56901.1 1 520.0 29.0 8.25 0.0 796.2 0.0 -4,-5 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000093930 Hmgcs1 ENSMUST00000226092 - NO_TRANSLATION retained_intron ENSMUSG00000036110 Slc17a2 ENSMUST00000006786 ENSMUSP00000006786 TRANSLATION protein_coding - CCDS36620.1 1 447.0 0.0 5.5 1.1 150.7 9.0 -4,-7 0.288 - 11.337 MINOR ENSMUSG00000036110 Slc17a2 ENSMUST00000141717 - NO_TRANSLATION retained_intron ENSMUSG00000036110 Slc17a2 ENSMUST00000139572 - NO_TRANSLATION retained_intron ENSMUSG00000036110 Slc17a2 ENSMUST00000099697 ENSMUSP00000097288 TRANSLATION protein_coding - - 5 478.0 0.0 5.85 8.9 150.7 10.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000000253 Gmpr ENSMUST00000222227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000253 Gmpr ENSMUST00000129176 - NO_TRANSLATION retained_intron ENSMUSG00000000253 Gmpr ENSMUST00000128873 ENSMUSP00000120825 TRANSLATION protein_coding start/stop - 5 290.0 32.0 6.405 0.0 211.6 0.0 -4,-5 0.001 7 -2.0 MINOR ENSMUSG00000000253 Gmpr ENSMUST00000000260 ENSMUSP00000000260 TRANSLATION protein_coding - CCDS26482.1 1 345.0 38.0 8.08 34.9 272.9 0.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000037946 Fgd3 ENSMUST00000110086 ENSMUSP00000105713 TRANSLATION protein_coding - - 1 532.0 0.0 4.94 0.0 204.3 0.0 -4,-5 0.0 10 4.134 MINOR ENSMUSG00000037946 Fgd3 ENSMUST00000048716 ENSMUSP00000048692 TRANSLATION protein_coding - CCDS26499.1 1 733.0 5.0 7.66 0.4 244.7 0.0 -4,-5 1.0 12 17.0 PRINCIPAL:1 ENSMUSG00000037946 Fgd3 ENSMUST00000110087 ENSMUSP00000105714 TRANSLATION protein_coding - CCDS26499.1 1 733.0 5.0 7.66 0.4 244.7 0.0 -4,-5 1.0 12 17.0 PRINCIPAL:1 ENSMUSG00000057396 Zfp759 ENSMUST00000224346 ENSMUSP00000153653 TRANSLATION protein_coding stop - - 124.0 3.0 2.8 0.0 67.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000057396 Zfp759 ENSMUST00000224426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057396 Zfp759 ENSMUST00000052716 ENSMUSP00000049650 TRANSLATION protein_coding - CCDS49299.1 1 721.0 81.0 3.6 0.0 383.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000021456 Fbp2 ENSMUST00000021907 ENSMUSP00000021907 TRANSLATION protein_coding - CCDS36698.1 1 339.0 20.0 7.0 36.9 20.6 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000021456 Fbp2 ENSMUST00000222000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021301 Hecw1 ENSMUST00000223189 ENSMUSP00000152279 TRANSLATION protein_coding stop - 3 132.0 0.0 1.25 0.0 99.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000021301 Hecw1 ENSMUST00000222904 - NO_TRANSLATION retained_intron ENSMUSG00000021301 Hecw1 ENSMUST00000220718 ENSMUSP00000152215 TRANSLATION protein_coding start - 1 1177.0 0.0 11.68 0.0 394.6 0.0 -4,-5 0.011 9 -2.0 MINOR ENSMUSG00000021301 Hecw1 ENSMUST00000222241 - NO_TRANSLATION retained_intron ENSMUSG00000021301 Hecw1 ENSMUST00000221274 ENSMUSP00000152351 TRANSLATION protein_coding stop - 3 74.0 0.0 0.0 0.0 29.1 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000021301 Hecw1 ENSMUST00000223317 - NO_TRANSLATION retained_intron ENSMUSG00000021301 Hecw1 ENSMUST00000223550 ENSMUSP00000152688 TRANSLATION protein_coding stop - 2 23.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0092 - -2.0 MINOR ENSMUSG00000021301 Hecw1 ENSMUST00000110516 ENSMUSP00000106145 TRANSLATION protein_coding - CCDS49207.1 5 1604.0 0.0 14.53 0.4 632.2 0.0 -4,-2 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000021301 Hecw1 ENSMUST00000221863 - NO_TRANSLATION retained_intron ENSMUSG00000021301 Hecw1 ENSMUST00000223283 - NO_TRANSLATION retained_intron ENSMUSG00000021731 Mrps30 ENSMUST00000225170 - NO_TRANSLATION retained_intron ENSMUSG00000021731 Mrps30 ENSMUST00000022245 ENSMUSP00000022245 TRANSLATION protein_coding - CCDS26794.1 1 442.0 0.0 5.0 0.0 589.8 0.0 -4,0 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000021611 Tert ENSMUST00000221522 ENSMUSP00000152750 TRANSLATION nonsense_mediated_decay - - 1 187.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0005 - -2.0 MINOR ENSMUSG00000021611 Tert ENSMUST00000223196 - NO_TRANSLATION retained_intron ENSMUSG00000021611 Tert ENSMUST00000022104 ENSMUSP00000022104 TRANSLATION protein_coding - CCDS26633.1 1 1122.0 0.0 6.879 0.4 142.4 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021611 Tert ENSMUST00000223325 - NO_TRANSLATION retained_intron ENSMUSG00000021611 Tert ENSMUST00000222251 ENSMUSP00000152835 TRANSLATION nonsense_mediated_decay start - 1 49.0 0.0 0.264 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021611 Tert ENSMUST00000222912 - NO_TRANSLATION retained_intron ENSMUSG00000021611 Tert ENSMUST00000223303 ENSMUSP00000152646 TRANSLATION nonsense_mediated_decay - - 1 187.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0005 - -2.0 MINOR ENSMUSG00000021532 Fastkd3 ENSMUST00000223319 ENSMUSP00000152635 TRANSLATION nonsense_mediated_decay - - 1 571.0 0.0 4.75 0.3 131.8 0.0 -3,-2 0.0017 1 -2.0 MINOR ENSMUSG00000021532 Fastkd3 ENSMUST00000222631 ENSMUSP00000152438 TRANSLATION protein_coding stop - 3 77.0 0.0 0.0 0.0 0.0 0.0 -3,-2 0.0 - -2.0 MINOR ENSMUSG00000021532 Fastkd3 ENSMUST00000221640 ENSMUSP00000152563 TRANSLATION protein_coding start - 2 80.0 0.0 1.0 0.0 29.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021532 Fastkd3 ENSMUST00000222685 ENSMUSP00000152259 TRANSLATION nonsense_mediated_decay start - 3 101.0 0.0 1.75 0.0 53.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021532 Fastkd3 ENSMUST00000222068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021532 Fastkd3 ENSMUST00000222660 ENSMUSP00000152488 TRANSLATION protein_coding stop - 3 83.0 0.0 0.0 0.0 0.0 0.0 -3,-2 0.0 - -2.0 MINOR ENSMUSG00000021532 Fastkd3 ENSMUST00000223187 ENSMUSP00000152573 TRANSLATION protein_coding stop - 2 135.0 0.0 0.0 0.0 0.0 0.0 -3,-2 0.0 - -2.0 MINOR ENSMUSG00000021532 Fastkd3 ENSMUST00000221006 - NO_TRANSLATION retained_intron ENSMUSG00000021532 Fastkd3 ENSMUST00000051784 ENSMUSP00000061737 TRANSLATION protein_coding - CCDS36719.1 1 661.0 0.0 7.83 10.3 209.3 0.0 -3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000021501 Caml ENSMUST00000021963 ENSMUSP00000021963 TRANSLATION protein_coding - CCDS26551.1 1 294.0 0.0 2.55 7.2 462.9 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000021501 Caml ENSMUST00000165154 - NO_TRANSLATION retained_intron ENSMUSG00000021501 Caml ENSMUST00000169228 - NO_TRANSLATION retained_intron ENSMUSG00000021497 Txndc15 ENSMUST00000021959 ENSMUSP00000021959 TRANSLATION protein_coding - CCDS26553.1 1 344.0 0.0 3.0 5.9 34.9 0.0 3,-1 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000021497 Txndc15 ENSMUST00000223649 - NO_TRANSLATION retained_intron ENSMUSG00000035367 Rmi1 ENSMUST00000225828 ENSMUSP00000153675 TRANSLATION protein_coding - CCDS26571.1 - 616.0 0.0 0.5 0.4 329.2 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000035367 Rmi1 ENSMUST00000225815 ENSMUSP00000153621 TRANSLATION protein_coding - CCDS26571.1 - 616.0 0.0 0.5 0.4 329.2 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000035367 Rmi1 ENSMUST00000224479 ENSMUSP00000153050 TRANSLATION protein_coding - CCDS26571.1 - 616.0 0.0 0.5 0.4 329.2 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000035367 Rmi1 ENSMUST00000224758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035367 Rmi1 ENSMUST00000042450 ENSMUSP00000041035 TRANSLATION protein_coding - CCDS26571.1 1 616.0 0.0 0.5 0.4 329.2 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000016018 Mtrex ENSMUST00000225037 - NO_TRANSLATION retained_intron ENSMUSG00000016018 Mtrex ENSMUST00000022281 ENSMUSP00000022281 TRANSLATION protein_coding - CCDS26778.1 1 1040.0 13.0 22.28 15.0 593.8 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000016018 Mtrex ENSMUST00000223559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016018 Mtrex ENSMUST00000225997 - NO_TRANSLATION retained_intron ENSMUSG00000016018 Mtrex ENSMUST00000224639 - NO_TRANSLATION retained_intron ENSMUSG00000016018 Mtrex ENSMUST00000224266 - NO_TRANSLATION retained_intron ENSMUSG00000063021 H2ac15 ENSMUST00000074752 ENSMUSP00000074310 TRANSLATION protein_coding - CCDS26293.1 - 130.0 0.0 1.0 11.0 134.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069274 H4c6 ENSMUST00000102971 ENSMUSP00000100036 TRANSLATION protein_coding - CCDS26345.1 - 103.0 0.0 1.0 9.3 34.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033102 Cdc14b ENSMUST00000222713 ENSMUSP00000152246 TRANSLATION protein_coding start - 3 153.0 1.0 1.75 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000033102 Cdc14b ENSMUST00000222766 ENSMUSP00000152870 TRANSLATION protein_coding start - 3 124.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033102 Cdc14b ENSMUST00000109770 ENSMUSP00000105392 TRANSLATION protein_coding - CCDS26598.1 1 485.0 13.0 9.7 5.6 236.0 0.0 -4,0 0.7284 1 15.46 ALTERNATIVE:1 ENSMUSG00000033102 Cdc14b ENSMUST00000039318 ENSMUSP00000046003 TRANSLATION protein_coding - CCDS26598.1 1 485.0 13.0 9.7 5.6 236.0 0.0 -4,0 0.7284 1 15.46 ALTERNATIVE:1 ENSMUSG00000033102 Cdc14b ENSMUST00000221634 ENSMUSP00000152388 TRANSLATION protein_coding - - 1 492.0 13.0 9.7 3.2 236.0 0.0 -4,0 0.4207 1 14.698 MINOR ENSMUSG00000033102 Cdc14b ENSMUST00000221217 ENSMUSP00000152736 TRANSLATION nonsense_mediated_decay start - 3 63.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000033102 Cdc14b ENSMUST00000109769 ENSMUSP00000105391 TRANSLATION protein_coding - CCDS49292.1 1 448.0 13.0 9.6 7.3 239.6 0.0 -4,-7 1.0 1 15.802 PRINCIPAL:2 ENSMUSG00000033102 Cdc14b ENSMUST00000221788 - NO_TRANSLATION retained_intron ENSMUSG00000033102 Cdc14b ENSMUST00000221139 ENSMUSP00000152843 TRANSLATION nonsense_mediated_decay - CCDS26598.1 1 485.0 13.0 9.7 5.6 236.0 0.0 -4,0 0.7284 - -2.0 MINOR ENSMUSG00000033102 Cdc14b ENSMUST00000223116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033102 Cdc14b ENSMUST00000221437 - NO_TRANSLATION retained_intron ENSMUSG00000054889 Dsp ENSMUST00000145151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054889 Dsp ENSMUST00000127906 ENSMUSP00000117252 TRANSLATION protein_coding - - 5 2284.0 0.0 13.78 1.1 356.8 0.0 -4,-7 0.366 93 8.077 ALTERNATIVE:2 ENSMUSG00000054889 Dsp ENSMUST00000124830 ENSMUSP00000115062 TRANSLATION protein_coding - CCDS49239.1 5 2883.0 0.0 13.78 2.3 356.8 0.0 -4,-7 1.0 114 9.0 PRINCIPAL:2 ENSMUSG00000021362 Gcm2 ENSMUST00000225271 ENSMUSP00000153244 TRANSLATION protein_coding stop - - 183.0 8.0 3.8 0.0 236.6 0.0 -4,-5 0.0202 - -2.0 MINOR ENSMUSG00000021362 Gcm2 ENSMUST00000021791 ENSMUSP00000021791 TRANSLATION protein_coding - CCDS26472.1 1 504.0 8.0 3.866 8.3 236.6 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000021362 Gcm2 ENSMUST00000225420 - NO_TRANSLATION retained_intron ENSMUSG00000075031 H2bc3 ENSMUST00000099703 ENSMUSP00000097294 TRANSLATION protein_coding - CCDS26363.1 - 126.0 0.0 1.0 12.5 91.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000017922 Prl3c1 ENSMUST00000110364 ENSMUSP00000105993 TRANSLATION protein_coding - CCDS49223.1 1 192.0 0.0 1.975 0.0 99.4 0.0 -4,-6 0.2338 - 6.0 MINOR ENSMUSG00000017922 Prl3c1 ENSMUST00000018066 ENSMUSP00000018066 TRANSLATION protein_coding - CCDS26392.1 1 212.0 0.0 1.975 0.1 102.3 0.0 3,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000017922 Prl3c1 ENSMUST00000178072 ENSMUSP00000136890 TRANSLATION protein_coding - CCDS49223.1 5 192.0 0.0 1.975 0.0 99.4 0.0 -4,-6 0.2338 - 6.0 MINOR ENSMUSG00000038891 Prl3b1 ENSMUST00000225089 ENSMUSP00000153139 TRANSLATION protein_coding stop - - 150.0 0.0 1.7 0.0 109.0 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000038891 Prl3b1 ENSMUST00000035273 ENSMUSP00000047680 TRANSLATION protein_coding - CCDS26393.1 1 222.0 0.0 2.898 0.4 181.3 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036211 H1f6 ENSMUST00000041052 ENSMUSP00000037304 TRANSLATION protein_coding - CCDS26358.1 - 209.0 0.0 0.6 6.4 75.5 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000021546 Hnrnpk ENSMUST00000177060 ENSMUSP00000135407 TRANSLATION protein_coding stop - 5 178.0 0.0 3.154 0.0 166.8 0.0 -4,-5 0.0008 13 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000224182 ENSMUSP00000153253 TRANSLATION protein_coding - CCDS79199.1 - 464.0 0.0 5.739 11.8 256.4 0.0 -4,-5 1.0 21 10.868 ALTERNATIVE:1 ENSMUSG00000021546 Hnrnpk ENSMUST00000176269 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000176257 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000225031 ENSMUSP00000153320 TRANSLATION nonsense_mediated_decay - - - 77.0 0.0 0.56 0.0 122.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000224342 ENSMUSP00000153651 TRANSLATION protein_coding stop - - 150.0 0.0 1.317 0.0 140.7 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000225866 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000177019 ENSMUSP00000135647 TRANSLATION protein_coding - CCDS79198.1 1 440.0 0.0 5.664 9.7 256.4 0.0 -4,-5 0.9595 22 10.136 ALTERNATIVE:1 ENSMUSG00000021546 Hnrnpk ENSMUST00000176888 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000175939 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000176797 ENSMUSP00000135867 TRANSLATION protein_coding start - 3 210.0 0.0 0.948 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000224836 ENSMUSP00000153523 TRANSLATION nonsense_mediated_decay - - - 77.0 0.0 0.56 0.0 122.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000043269 ENSMUSP00000039269 TRANSLATION protein_coding - CCDS49283.1 1 463.0 0.0 5.805 10.6 256.4 0.0 -4,-5 0.996 21 10.667 ALTERNATIVE:1 ENSMUSG00000021546 Hnrnpk ENSMUST00000226015 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000176359 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000116403 ENSMUSP00000112104 TRANSLATION protein_coding - CCDS79199.1 1 464.0 0.0 5.739 11.8 256.4 0.0 -4,-5 1.0 21 10.868 ALTERNATIVE:1 ENSMUSG00000021546 Hnrnpk ENSMUST00000224030 ENSMUSP00000153416 TRANSLATION protein_coding stop - - 143.0 0.0 1.251 0.0 140.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000225674 ENSMUSP00000152935 TRANSLATION protein_coding - CCDS79199.1 - 464.0 0.0 5.739 11.8 256.4 0.0 -4,-5 1.0 21 10.868 ALTERNATIVE:1 ENSMUSG00000021546 Hnrnpk ENSMUST00000177117 ENSMUSP00000135109 TRANSLATION protein_coding stop - 3 87.0 0.0 1.894 0.0 29.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000224524 ENSMUSP00000153054 TRANSLATION protein_coding stop - - 192.0 0.0 2.829 0.0 170.7 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000176207 ENSMUSP00000135354 TRANSLATION protein_coding - CCDS79197.1 1 439.0 0.0 5.73 9.7 256.4 0.0 -4,-5 0.9684 22 10.268 PRINCIPAL:4 ENSMUSG00000021546 Hnrnpk ENSMUST00000225176 ENSMUSP00000153487 TRANSLATION protein_coding stop - - 230.0 0.0 3.225 0.0 184.9 0.0 -4,-5 0.0008 13 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000177377 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000176849 ENSMUSP00000135342 TRANSLATION protein_coding stop - 5 299.0 0.0 3.15 0.0 184.9 0.0 -4,-5 0.0017 17 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000224531 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000223822 ENSMUSP00000153705 TRANSLATION protein_coding stop - - 52.0 0.0 0.16 0.0 98.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000224782 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000176725 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000176609 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000176305 ENSMUSP00000135305 TRANSLATION protein_coding stop - 5 256.0 0.0 3.225 0.0 184.9 0.0 -4,-5 0.0008 13 -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000175847 ENSMUSP00000134837 TRANSLATION nonsense_mediated_decay - - 3 77.0 0.0 0.56 0.0 122.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000177051 - NO_TRANSLATION retained_intron ENSMUSG00000021546 Hnrnpk ENSMUST00000176558 ENSMUSP00000135623 TRANSLATION protein_coding - - 2 97.0 0.0 0.81 0.0 134.5 0.0 -4,-5 0.0 6 0.4 MINOR ENSMUSG00000021546 Hnrnpk ENSMUST00000177497 ENSMUSP00000135833 TRANSLATION protein_coding - - 1 394.0 0.0 5.245 0.0 117.0 0.0 -4,-5 0.0005 15 5.878 MINOR ENSMUSG00000091347 Zfp999 ENSMUST00000167981 ENSMUSP00000126511 TRANSLATION protein_coding start/stop - - 85.0 12.0 1.0 0.0 60.0 0.0 -4,-5 0.7697 - -2.0 PRINCIPAL:1 ENSMUSG00000074895 Eif4e1b ENSMUST00000142158 ENSMUSP00000117092 TRANSLATION protein_coding stop - 2 243.0 0.0 5.16 0.0 177.0 0.0 -4,-5 0.2247 - -2.0 MINOR ENSMUSG00000074895 Eif4e1b ENSMUST00000132728 ENSMUSP00000123294 TRANSLATION protein_coding - CCDS49269.1 1 244.0 0.0 5.16 0.0 177.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000074895 Eif4e1b ENSMUST00000110003 ENSMUSP00000105630 TRANSLATION protein_coding - CCDS49269.1 2 244.0 0.0 5.16 0.0 177.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000074895 Eif4e1b ENSMUST00000132005 ENSMUSP00000116681 TRANSLATION protein_coding - CCDS70459.1 2 188.0 0.0 2.995 0.0 110.7 0.0 -4,-5 0.001 - 1.668 MINOR ENSMUSG00000074895 Eif4e1b ENSMUST00000141398 ENSMUSP00000114217 TRANSLATION protein_coding stop - 1 103.0 0.0 3.41 0.0 60.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074895 Eif4e1b ENSMUST00000139184 ENSMUSP00000119305 TRANSLATION protein_coding stop - 1 134.0 0.0 2.08 0.0 83.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074895 Eif4e1b ENSMUST00000152204 ENSMUSP00000120619 TRANSLATION protein_coding - CCDS49270.1 1 183.0 0.0 2.995 0.0 110.7 0.0 -4,-5 0.002 - 1.668 MINOR ENSMUSG00000074895 Eif4e1b ENSMUST00000126785 ENSMUSP00000118697 TRANSLATION protein_coding - CCDS70460.1 3 250.0 0.0 5.16 0.3 177.0 0.0 -4,-5 0.3965 - 8.0 ALTERNATIVE:2 ENSMUSG00000074895 Eif4e1b ENSMUST00000132415 ENSMUSP00000120733 TRANSLATION protein_coding stop - 1 162.0 0.0 2.83 0.0 111.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074895 Eif4e1b ENSMUST00000126525 ENSMUSP00000121625 TRANSLATION nonsense_mediated_decay - - 1 156.0 0.0 1.2175 0.0 29.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095071 AF067061 ENSMUST00000181748 ENSMUSP00000137949 TRANSLATION protein_coding - CCDS84071.1 1 171.0 0.0 0.0 0.0 307.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095071 AF067061 ENSMUST00000179905 ENSMUSP00000136309 TRANSLATION protein_coding - CCDS84071.1 - 171.0 0.0 0.0 0.0 307.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038132 Rbm24 ENSMUST00000225727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038132 Rbm24 ENSMUST00000225221 - NO_TRANSLATION retained_intron ENSMUSG00000038132 Rbm24 ENSMUST00000225890 - NO_TRANSLATION retained_intron ENSMUSG00000038132 Rbm24 ENSMUST00000037923 ENSMUSP00000043120 TRANSLATION protein_coding - CCDS36651.1 2 236.0 0.0 2.2 24.4 63.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038132 Rbm24 ENSMUST00000224638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021565 Slc6a19 ENSMUST00000124406 ENSMUSP00000119313 TRANSLATION nonsense_mediated_decay - - 3 83.0 5.0 1.0 0.0 58.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021565 Slc6a19 ENSMUST00000132085 - NO_TRANSLATION retained_intron ENSMUSG00000021565 Slc6a19 ENSMUST00000139087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021565 Slc6a19 ENSMUST00000022048 ENSMUSP00000022048 TRANSLATION protein_coding - CCDS26634.1 1 634.0 10.0 12.25 23.7 593.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000021565 Slc6a19 ENSMUST00000123997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021565 Slc6a19 ENSMUST00000140878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021565 Slc6a19 ENSMUST00000120322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095217 H2bc15 ENSMUST00000091709 ENSMUSP00000089301 TRANSLATION protein_coding - CCDS26294.1 - 126.0 0.0 1.0 12.5 92.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051054 1700014D04Rik ENSMUST00000180139 ENSMUSP00000136424 TRANSLATION protein_coding - - 2 983.0 0.0 0.2 0.0 328.1 0.0 -4,-5 0.9435 - 12.0 PRINCIPAL:1 ENSMUSG00000051054 1700014D04Rik ENSMUST00000055343 ENSMUSP00000052403 TRANSLATION protein_coding stop - - 265.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0495 - -2.0 MINOR ENSMUSG00000051054 1700014D04Rik ENSMUST00000178508 ENSMUSP00000136897 TRANSLATION protein_coding stop - 3 99.0 0.0 0.0 0.0 49.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034789 Rab24 ENSMUST00000224936 - NO_TRANSLATION retained_intron ENSMUSG00000034789 Rab24 ENSMUST00000035242 ENSMUSP00000046188 TRANSLATION protein_coding - CCDS26541.1 1 203.0 18.0 5.8 30.2 153.0 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000034789 Rab24 ENSMUST00000223672 - NO_TRANSLATION retained_intron ENSMUSG00000034789 Rab24 ENSMUST00000224685 ENSMUSP00000153246 TRANSLATION protein_coding start - - 116.0 3.0 1.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034789 Rab24 ENSMUST00000225289 - NO_TRANSLATION retained_intron ENSMUSG00000115697 Vmn1r216 ENSMUST00000228389 ENSMUSP00000153724 TRANSLATION protein_coding,RT - CCDS26331.1 - 298.0 0.0 0.0 0.0 116.2 5.0 -2,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000115697 Vmn1r216 ENSMUST00000228802 ENSMUSP00000153991 TRANSLATION nonsense_mediated_decay,RT - CCDS26331.1 - 298.0 0.0 0.0 0.0 116.2 5.0 -2,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000115697 Vmn1r216 ENSMUST00000227317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041765 Ubac2 ENSMUST00000226998 ENSMUSP00000154341 TRANSLATION nonsense_mediated_decay - - - 77.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041765 Ubac2 ENSMUST00000227684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041765 Ubac2 ENSMUST00000227936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041765 Ubac2 ENSMUST00000039803 ENSMUSP00000043245 TRANSLATION protein_coding - CCDS37019.1 1 345.0 0.0 0.8 23.1 44.9 0.0 -2,-3 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000091756 Gm3095 ENSMUST00000249387 ENSMUSP00000159744 TRANSLATION protein_coding - - - 227.0 0.0 3.0 0.0 74.2 0.0 -4,-5 0.7384 - 12.0 PRINCIPAL:1 ENSMUSG00000050335 Lgals3 ENSMUST00000150290 ENSMUSP00000114350 TRANSLATION protein_coding - CCDS26986.1 1 264.0 11.0 3.43 0.1 129.7 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000050335 Lgals3 ENSMUST00000151405 ENSMUSP00000118660 TRANSLATION protein_coding stop - 3 139.0 1.0 0.93 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050335 Lgals3 ENSMUST00000142734 ENSMUSP00000118169 TRANSLATION protein_coding - CCDS26986.1 1 264.0 11.0 3.43 0.1 129.7 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000050335 Lgals3 ENSMUST00000144794 ENSMUSP00000114177 TRANSLATION protein_coding stop - 3 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050335 Lgals3 ENSMUST00000226585 ENSMUSP00000154551 TRANSLATION protein_coding stop - - 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050335 Lgals3 ENSMUST00000146468 ENSMUSP00000119275 TRANSLATION protein_coding - CCDS26986.1 1 264.0 11.0 3.43 0.1 129.7 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000094914 Trav9d-2 ENSMUST00000178824 ENSMUSP00000136004 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.1 0.0 59.7 0.0 4,-1 0.3388 - -2.0 ALTERNATIVE:2 ENSMUSG00000094914 Trav9d-2 ENSMUST00000199746 ENSMUSP00000142463 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.1 0.0 59.7 0.0 3,-1 0.8103 - -2.0 PRINCIPAL:5 ENSMUSG00000021891 Mettl6 ENSMUST00000227595 ENSMUSP00000154580 TRANSLATION protein_coding - - - 237.0 9.0 4.83 0.0 0.0 0.0 -4,-6 0.0007 4 4.002 MINOR ENSMUSG00000021891 Mettl6 ENSMUST00000228181 ENSMUSP00000153931 TRANSLATION protein_coding stop - - 186.0 18.0 3.5 0.0 47.6 0.0 -4,-6 0.0208 3 -2.0 MINOR ENSMUSG00000021891 Mettl6 ENSMUST00000227095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021891 Mettl6 ENSMUST00000226986 ENSMUSP00000154173 TRANSLATION protein_coding start - - 78.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000021891 Mettl6 ENSMUST00000055303 ENSMUSP00000077138 TRANSLATION protein_coding - CCDS26913.1 1 282.0 18.0 5.83 0.0 57.8 0.0 -4,-6 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000021891 Mettl6 ENSMUST00000227852 - NO_TRANSLATION retained_intron ENSMUSG00000021891 Mettl6 ENSMUST00000228727 ENSMUSP00000154679 TRANSLATION protein_coding - - - 232.0 18.0 4.5 0.0 57.8 0.0 -4,-6 0.1127 4 15.342 MINOR ENSMUSG00000021891 Mettl6 ENSMUST00000227777 ENSMUSP00000154767 TRANSLATION protein_coding - - - 255.0 18.0 4.5 0.0 57.8 0.0 -4,-6 0.0272 4 15.342 MINOR ENSMUSG00000021891 Mettl6 ENSMUST00000228943 ENSMUSP00000154487 TRANSLATION protein_coding stop - - 53.0 9.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021891 Mettl6 ENSMUST00000228309 - NO_TRANSLATION retained_intron ENSMUSG00000045871 Slitrk6 ENSMUST00000078386 ENSMUSP00000077492 TRANSLATION protein_coding - CCDS27326.1 1 840.0 0.0 0.1 19.4 101.2 0.0 -1,-4 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000042682 Selenok ENSMUST00000223998 ENSMUSP00000153053 TRANSLATION nonsense_mediated_decay - - - 40.0 0.0 0.0 0.0 47.8 1.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000042682 Selenok ENSMUST00000112268 ENSMUSP00000107887 TRANSLATION protein_coding - CCDS36844.1 1 94.0 0.0 0.0 21.2 101.2 2.0 -4,-7 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000042682 Selenok ENSMUST00000133229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035095 Fam167a ENSMUST00000121288 ENSMUSP00000113962 TRANSLATION protein_coding - CCDS27201.1 1 215.0 0.0 0.8 13.0 133.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000035095 Fam167a ENSMUST00000128313 - NO_TRANSLATION retained_intron ENSMUSG00000121603 ENSMUSG00000121603 ENSMUST00000249660 ENSMUSP00000159839 TRANSLATION protein_coding - - - 34.0 0.0 0.0 1.0 0.0 0.0 -,- 0.5854 - 0.0 PRINCIPAL:1 ENSMUSG00000096678 Trav9-4 ENSMUST00000103662 ENSMUSP00000100439 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.1 0.0 56.5 0.0 3,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000076802 Trav6n-6 ENSMUST00000181793 ENSMUSP00000137708 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.1 0.0 47.7 0.0 2,-1 0.8259 - -2.0 PRINCIPAL:5 ENSMUSG00000076802 Trav6n-6 ENSMUST00000103613 ENSMUSP00000100390 TRANSLATION TR_V_gene start/stop - - 95.0 0.0 1.0 0.0 47.7 0.0 -4,-5 0.0225 - -2.0 ALTERNATIVE:2 ENSMUSG00000006288 Ttc5 ENSMUST00000006451 ENSMUSP00000006451 TRANSLATION protein_coding - CCDS36905.1 1 440.0 0.0 9.99 13.0 137.7 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000006288 Ttc5 ENSMUST00000226768 ENSMUSP00000154412 TRANSLATION protein_coding - - - 185.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000006288 Ttc5 ENSMUST00000227327 - NO_TRANSLATION retained_intron ENSMUSG00000006288 Ttc5 ENSMUST00000227934 - NO_TRANSLATION retained_intron ENSMUSG00000006288 Ttc5 ENSMUST00000228440 ENSMUSP00000154731 TRANSLATION nonsense_mediated_decay - - - 195.0 0.0 3.5 0.1 0.0 0.0 -4,-5 0.0019 2 -2.0 MINOR ENSMUSG00000006288 Ttc5 ENSMUST00000227751 ENSMUSP00000154085 TRANSLATION nonsense_mediated_decay start - - 75.0 0.0 1.264 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000076760 Trav3-1 ENSMUST00000103569 ENSMUSP00000100346 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.3 0.0 52.0 0.0 1,-2 0.8252 - -2.0 PRINCIPAL:1 ENSMUSG00000076867 Trdv4 ENSMUST00000103679 ENSMUSP00000100456 TRANSLATION TR_V_gene stop - - 115.0 0.0 0.7 0.0 46.7 0.0 1,-3 0.8271 - -2.0 PRINCIPAL:1 ENSMUSG00000021929 Kpna3 ENSMUST00000022496 ENSMUSP00000022496 TRANSLATION protein_coding - CCDS36942.1 1 521.0 0.0 11.93 31.0 449.3 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000021929 Kpna3 ENSMUST00000225207 - NO_TRANSLATION retained_intron ENSMUSG00000021986 Amer2 ENSMUST00000225247 ENSMUSP00000153031 TRANSLATION protein_coding - - - 546.0 0.0 0.0 0.1 490.2 0.0 -4,-7 0.0141 8 0.0 MINOR ENSMUSG00000021986 Amer2 ENSMUST00000239079 ENSMUSP00000159188 TRANSLATION protein_coding - CCDS27177.1 - 635.0 0.0 0.0 0.0 651.7 0.0 -4,-5 0.3354 11 0.0 ALTERNATIVE:2 ENSMUSG00000021986 Amer2 ENSMUST00000022561 ENSMUSP00000022561 TRANSLATION protein_coding - - - 672.0 0.0 0.0 0.1 651.7 0.0 -4,-7 0.7987 11 0.0 PRINCIPAL:2 ENSMUSG00000021986 Amer2 ENSMUST00000224957 ENSMUSP00000152965 TRANSLATION protein_coding stop - - 254.0 0.0 0.0 0.0 178.5 0.0 -4,-7 0.0002 7 -2.0 MINOR ENSMUSG00000051212 Gpr183 ENSMUST00000049872 ENSMUSP00000052404 TRANSLATION protein_coding - CCDS27343.1 1 357.0 0.0 2.0 6.2 157.7 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000051212 Gpr183 ENSMUST00000227267 ENSMUSP00000154545 TRANSLATION protein_coding stop - - 40.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000096397 Trav17 ENSMUST00000186545 ENSMUSP00000140087 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.1 0.0 50.6 0.0 2,-2 0.3253 - -2.0 ALTERNATIVE:2 ENSMUSG00000096397 Trav17 ENSMUST00000103672 ENSMUSP00000100449 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.1 0.0 50.6 0.0 3,-2 0.821 - -2.0 PRINCIPAL:5 ENSMUSG00000014725 Adam28 ENSMUST00000022642 ENSMUSP00000022642 TRANSLATION protein_coding - CCDS36965.1 1 793.0 19.0 8.645 0.0 484.0 2.0 4,-1 0.583 10 14.0 ALTERNATIVE:2 ENSMUSG00000014725 Adam28 ENSMUST00000230006 - NO_TRANSLATION retained_intron ENSMUSG00000014725 Adam28 ENSMUST00000111072 ENSMUSP00000106701 TRANSLATION protein_coding - CCDS36964.1 1 774.0 19.0 8.645 0.3 484.0 2.0 4,-1 1.0 10 14.0 PRINCIPAL:2 ENSMUSG00000014725 Adam28 ENSMUST00000224039 ENSMUSP00000153354 TRANSLATION protein_coding - - - 768.0 19.0 8.645 0.0 484.0 2.0 4,-1 0.4059 10 14.0 ALTERNATIVE:2 ENSMUSG00000014725 Adam28 ENSMUST00000224131 - NO_TRANSLATION retained_intron ENSMUSG00000014725 Adam28 ENSMUST00000225767 ENSMUSP00000155362 TRANSLATION protein_coding - - - 41.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0 - 0.0 MINOR ENSMUSG00000021904 Sema3g ENSMUST00000090180 ENSMUSP00000087643 TRANSLATION protein_coding - CCDS26908.1 1 780.0 0.0 9.42 4.0 476.6 0.0 1,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000021958 Pinx1 ENSMUST00000022528 ENSMUSP00000022528 TRANSLATION protein_coding - CCDS27205.1 1 332.0 0.0 0.0 0.4 57.3 0.0 -4,-7 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000021958 Pinx1 ENSMUST00000225644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021958 Pinx1 ENSMUST00000225564 - NO_TRANSLATION retained_intron ENSMUSG00000096478 Trav9d-1 ENSMUST00000178426 ENSMUSP00000136741 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 53.9 0.0 3,-2 0.824 - -2.0 PRINCIPAL:1 ENSMUSG00000021898 Asb14 ENSMUST00000167365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021898 Asb14 ENSMUST00000167929 ENSMUSP00000130428 TRANSLATION nonsense_mediated_decay - - 3 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021898 Asb14 ENSMUST00000239004 ENSMUSP00000159012 TRANSLATION protein_coding - - - 541.0 0.0 4.265 0.0 132.1 0.0 -4,-5 0.0055 3 8.208 MINOR ENSMUSG00000021898 Asb14 ENSMUST00000238987 ENSMUSP00000159151 TRANSLATION protein_coding - - - 587.0 0.0 4.865 13.7 175.3 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000021898 Asb14 ENSMUST00000165305 ENSMUSP00000131669 TRANSLATION nonsense_mediated_decay start - 5 118.0 0.0 1.358 0.0 54.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025555 Farp1 ENSMUST00000137971 - NO_TRANSLATION retained_intron ENSMUSG00000025555 Farp1 ENSMUST00000135010 ENSMUSP00000116985 TRANSLATION protein_coding stop - 5 211.0 0.0 4.98 0.0 84.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025555 Farp1 ENSMUST00000153607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025555 Farp1 ENSMUST00000026635 ENSMUSP00000026635 TRANSLATION protein_coding - CCDS37015.1 5 1048.0 0.0 17.467 18.5 449.8 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000021963 Sap18 ENSMUST00000111268 ENSMUSP00000106899 TRANSLATION protein_coding - - 2 92.0 0.0 2.0 0.0 70.3 0.0 -4,-5 0.0052 - 3.402 MINOR ENSMUSG00000021963 Sap18 ENSMUST00000111267 ENSMUSP00000106898 TRANSLATION protein_coding - - 2 92.0 0.0 2.0 0.0 70.3 0.0 -4,-5 0.0052 - 3.402 MINOR ENSMUSG00000021963 Sap18 ENSMUST00000128764 ENSMUSP00000120071 TRANSLATION protein_coding - CCDS27159.2 1 172.0 0.0 4.0 10.7 146.9 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021963 Sap18 ENSMUST00000131455 - NO_TRANSLATION retained_intron ENSMUSG00000021963 Sap18 ENSMUST00000143600 ENSMUSP00000121525 TRANSLATION protein_coding - - 1 111.0 0.0 2.5 0.0 103.9 0.0 -4,-5 0.0281 - 6.42 MINOR ENSMUSG00000021963 Sap18 ENSMUST00000111269 ENSMUSP00000106900 TRANSLATION protein_coding - - 2 107.0 0.0 2.0 0.0 61.3 0.0 -4,-2 0.0 - 2.862 MINOR ENSMUSG00000002332 Dhrs1 ENSMUST00000128802 - NO_TRANSLATION retained_intron ENSMUSG00000002332 Dhrs1 ENSMUST00000002403 ENSMUSP00000002403 TRANSLATION protein_coding - CCDS36934.1 1 313.0 27.0 7.25 13.6 136.0 0.0 -4,-2 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000002332 Dhrs1 ENSMUST00000155969 - NO_TRANSLATION retained_intron ENSMUSG00000002332 Dhrs1 ENSMUST00000142043 - NO_TRANSLATION retained_intron ENSMUSG00000091725 Gm8220 ENSMUST00000164663 ENSMUSP00000159806 TRANSLATION protein_coding - - 5 211.0 0.0 3.0 0.0 89.4 0.0 -4,-2 0.7598 - 12.0 PRINCIPAL:1 ENSMUSG00000076916 Traj13 ENSMUST00000103728 ENSMUSP00000142869 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000076871 Trdj2 ENSMUST00000103683 ENSMUSP00000143329 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000094176 Trav6d-6 ENSMUST00000197754 ENSMUSP00000143439 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.1 0.0 47.8 0.0 1,-1 0.8264 - -2.0 PRINCIPAL:1 ENSMUSG00000021768 Dusp13 ENSMUST00000183698 ENSMUSP00000139058 TRANSLATION protein_coding - - 5 221.0 8.0 3.0 0.0 86.1 0.0 -4,-5 0.0086 1 18.0 MINOR ENSMUSG00000021768 Dusp13 ENSMUST00000120956 ENSMUSP00000113305 TRANSLATION protein_coding - CCDS26864.1 1 263.0 8.0 3.0 0.0 86.1 0.0 -4,-1 0.1752 1 18.0 MINOR ENSMUSG00000021768 Dusp13 ENSMUST00000119866 ENSMUSP00000112552 TRANSLATION protein_coding - - 5 316.0 8.0 3.0 4.1 86.1 0.0 -4,-2 0.4272 1 19.032 MINOR ENSMUSG00000021768 Dusp13 ENSMUST00000120984 ENSMUSP00000113985 TRANSLATION protein_coding - - 1 198.0 8.0 3.0 10.0 86.1 0.0 -4,-7 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000021768 Dusp13 ENSMUST00000184703 ENSMUSP00000138972 TRANSLATION protein_coding - - 5 198.0 8.0 3.0 10.0 86.1 0.0 -4,-7 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000095975 Cphx1 ENSMUST00000183557 - NO_TRANSLATION retained_intron ENSMUSG00000095975 Cphx1 ENSMUST00000184016 ENSMUSP00000139237 TRANSLATION protein_coding - CCDS26877.1 1 182.0 0.0 2.0 0.0 49.2 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095975 Cphx1 ENSMUST00000061593 - NO_TRANSLATION retained_intron ENSMUSG00000095975 Cphx1 ENSMUST00000183436 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021933 Gucy1b2 ENSMUST00000165651 ENSMUSP00000128114 TRANSLATION protein_coding - CCDS56962.1 1 809.0 8.0 8.73 0.0 569.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000021933 Gucy1b2 ENSMUST00000128573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021933 Gucy1b2 ENSMUST00000022501 ENSMUSP00000022501 TRANSLATION protein_coding - CCDS27190.1 1 824.0 8.0 8.605 0.0 569.7 0.0 -4,-5 0.3818 - 13.748 ALTERNATIVE:2 ENSMUSG00000059606 Rnase2b ENSMUST00000075648 ENSMUSP00000075074 TRANSLATION protein_coding - CCDS27039.1 - 155.0 5.0 1.0 1.1 120.3 0.0 4,-1 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000022033 Pbk ENSMUST00000139644 ENSMUSP00000114484 TRANSLATION protein_coding stop - 3 120.0 1.0 2.75 0.0 33.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022033 Pbk ENSMUST00000022612 ENSMUSP00000022612 TRANSLATION protein_coding - CCDS27215.1 1 330.0 3.0 6.75 0.0 135.8 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000022033 Pbk ENSMUST00000152130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044186 Nkx2-6 ENSMUST00000062437 ENSMUSP00000049898 TRANSLATION protein_coding - CCDS56968.1 1 289.0 0.0 0.6 0.0 71.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079391 Gm2974 ENSMUST00000164512 ENSMUSP00000130084 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 75.5 0.0 -4,-5 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000053465 Hs6st3 ENSMUST00000065904 ENSMUSP00000070394 TRANSLATION protein_coding - CCDS27339.1 1 470.0 0.0 1.48 7.6 270.1 0.0 -2,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000090166 Ear10 ENSMUST00000159175 ENSMUSP00000123872 TRANSLATION protein_coding - CCDS26965.1 1 156.0 5.0 1.0 0.0 113.6 0.0 4,-1 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000090166 Ear10 ENSMUST00000163652 ENSMUSP00000130933 TRANSLATION protein_coding - CCDS26965.1 - 156.0 5.0 1.0 0.0 113.6 0.0 4,-1 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000076883 Traj48 ENSMUST00000103695 - NO_TRANSLATION processed_transcript ENSMUSG00000076883 Traj48 ENSMUST00000200046 ENSMUSP00000143469 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000079364 Gm3558 ENSMUST00000163790 ENSMUSP00000130601 TRANSLATION protein_coding - CCDS56936.1 1 205.0 0.0 3.0 0.0 75.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000092167 Gm3696 ENSMUST00000167923 ENSMUSP00000132868 TRANSLATION protein_coding - CCDS49397.1 5 203.0 0.0 3.0 0.0 74.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000076926 Traj2 ENSMUST00000103738 ENSMUSP00000142337 TRANSLATION TR_J_gene start/stop - - 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021905 Dph3 ENSMUST00000112000 - NO_TRANSLATION retained_intron ENSMUSG00000021905 Dph3 ENSMUST00000112001 ENSMUSP00000127944 TRANSLATION nonsense_mediated_decay - - 1 54.0 3.0 1.2 0.0 47.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021905 Dph3 ENSMUST00000022461 ENSMUSP00000022461 TRANSLATION protein_coding - CCDS36861.1 1 82.0 4.0 2.5 28.9 85.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000021905 Dph3 ENSMUST00000067955 ENSMUSP00000068491 TRANSLATION protein_coding - CCDS36861.1 1 82.0 4.0 2.5 28.9 85.5 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000021905 Dph3 ENSMUST00000144149 - NO_TRANSLATION retained_intron ENSMUSG00000021905 Dph3 ENSMUST00000124303 ENSMUSP00000120583 TRANSLATION protein_coding - CCDS36860.1 2 57.0 2.0 1.75 6.1 47.5 0.0 -4,-5 0.1076 - 10.268 MINOR ENSMUSG00000021905 Dph3 ENSMUST00000167796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022175 Lrp10 ENSMUST00000226472 - NO_TRANSLATION retained_intron ENSMUSG00000022175 Lrp10 ENSMUST00000022782 ENSMUSP00000022782 TRANSLATION protein_coding - CCDS27089.1 1 713.0 13.0 1.531 2.8 109.1 0.0 4,-1 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000022175 Lrp10 ENSMUST00000228407 ENSMUSP00000154017 TRANSLATION protein_coding start - - 131.0 5.0 0.8 0.0 42.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022175 Lrp10 ENSMUST00000227760 ENSMUSP00000154451 TRANSLATION nonsense_mediated_decay start - - 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022048 Dpysl2 ENSMUST00000022629 ENSMUSP00000022629 TRANSLATION protein_coding - CCDS27224.1 1 572.0 2.0 11.55 31.9 177.7 0.0 -4,-5 1.0 30 18.0 PRINCIPAL:1 ENSMUSG00000022090 Pdlim2 ENSMUST00000153735 ENSMUSP00000116200 TRANSLATION protein_coding - CCDS27248.1 5 349.0 9.0 3.6 5.2 137.0 0.0 -4,-6 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000022090 Pdlim2 ENSMUST00000141363 - NO_TRANSLATION retained_intron ENSMUSG00000022090 Pdlim2 ENSMUST00000022681 ENSMUSP00000022681 TRANSLATION protein_coding - CCDS27248.1 1 349.0 9.0 3.6 5.2 137.0 0.0 -4,-6 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000022090 Pdlim2 ENSMUST00000129174 ENSMUSP00000139820 TRANSLATION protein_coding - - 2 128.0 9.0 1.3 0.0 36.5 0.0 -4,-1 0.0009 6 7.398 MINOR ENSMUSG00000022090 Pdlim2 ENSMUST00000143393 ENSMUSP00000119222 TRANSLATION protein_coding stop - 5 217.0 0.0 2.3 0.0 61.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000022090 Pdlim2 ENSMUST00000125300 ENSMUSP00000116694 TRANSLATION protein_coding start - 3 151.0 9.0 1.3 0.0 75.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022090 Pdlim2 ENSMUST00000138792 - NO_TRANSLATION retained_intron ENSMUSG00000022090 Pdlim2 ENSMUST00000123125 - NO_TRANSLATION retained_intron ENSMUSG00000022090 Pdlim2 ENSMUST00000135944 - NO_TRANSLATION retained_intron ENSMUSG00000022090 Pdlim2 ENSMUST00000127836 ENSMUSP00000141050 TRANSLATION protein_coding - - 5 128.0 9.0 1.3 0.0 36.5 0.0 -4,-1 0.0009 6 7.398 MINOR ENSMUSG00000022194 Pabpn1 ENSMUST00000172557 ENSMUSP00000133405 TRANSLATION protein_coding - - 3 178.0 0.0 3.86 4.9 56.1 0.0 -4,-5 1.0 6 13.172 PRINCIPAL:1 ENSMUSG00000022194 Pabpn1 ENSMUST00000146271 - NO_TRANSLATION retained_intron ENSMUSG00000022194 Pabpn1 ENSMUST00000140691 ENSMUSP00000115294 TRANSLATION protein_coding stop - 2 164.0 0.0 3.964 0.0 56.1 0.0 -4,-5 0.002 7 -2.0 MINOR ENSMUSG00000022194 Pabpn1 ENSMUST00000022808 ENSMUSP00000022808 TRANSLATION protein_coding - CCDS27104.1 1 302.0 0.0 4.124 0.1 56.1 0.0 -1,2 0.318 7 11.7 MINOR ENSMUSG00000022194 Pabpn1 ENSMUST00000172695 ENSMUSP00000133579 TRANSLATION nonsense_mediated_decay - - 5 73.0 0.0 0.0 0.0 0.0 0.0 -1,2 0.0005 - -2.0 MINOR ENSMUSG00000022194 Pabpn1 ENSMUST00000150975 ENSMUSP00000133937 TRANSLATION protein_coding - - 1 319.0 0.0 4.2725 0.0 56.1 0.0 -1,2 0.1135 7 12.0 MINOR ENSMUSG00000022194 Pabpn1 ENSMUST00000139985 ENSMUSP00000122432 TRANSLATION protein_coding - - 2 168.0 0.0 3.86 0.0 56.1 0.0 -4,-5 0.0056 6 11.172 MINOR ENSMUSG00000022194 Pabpn1 ENSMUST00000141446 ENSMUSP00000123305 TRANSLATION protein_coding - - 3 168.0 0.0 3.86 0.0 56.1 0.0 -4,-5 0.0056 6 11.172 MINOR ENSMUSG00000022194 Pabpn1 ENSMUST00000116476 ENSMUSP00000112177 TRANSLATION protein_coding - - 1 292.0 0.0 4.124 0.0 56.1 0.0 -1,2 0.0843 7 11.7 MINOR ENSMUSG00000063787 Chchd1 ENSMUST00000224633 ENSMUSP00000152969 TRANSLATION protein_coding - - - 70.0 0.0 2.0 0.0 28.5 0.0 -4,-5 0.0075 2 8.358 MINOR ENSMUSG00000063787 Chchd1 ENSMUST00000224132 - NO_TRANSLATION retained_intron ENSMUSG00000063787 Chchd1 ENSMUST00000071215 ENSMUSP00000071202 TRANSLATION protein_coding - CCDS26852.1 1 118.0 0.0 3.33 14.5 34.1 0.0 -4,-1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000063787 Chchd1 ENSMUST00000225527 - NO_TRANSLATION retained_intron ENSMUSG00000063787 Chchd1 ENSMUST00000226072 ENSMUSP00000153514 TRANSLATION nonsense_mediated_decay - - - 55.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000047977 Synb ENSMUST00000059362 ENSMUSP00000061107 TRANSLATION protein_coding - CCDS27239.1 1 618.0 0.0 0.0 0.4 0.0 0.0 4,-1 0.9675 - 0.0 PRINCIPAL:1 ENSMUSG00000076826 Trav4-2 ENSMUST00000103637 ENSMUSP00000100414 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.2 0.0 45.7 0.0 3,-1 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000037572 Wdhd1 ENSMUST00000139124 - NO_TRANSLATION retained_intron ENSMUSG00000037572 Wdhd1 ENSMUST00000228810 - NO_TRANSLATION retained_intron ENSMUSG00000037572 Wdhd1 ENSMUST00000187531 ENSMUSP00000141182 TRANSLATION protein_coding - - 5 1118.0 0.0 17.84 1.1 444.0 0.0 -4,-5 0.9252 13 13.0 PRINCIPAL:1 ENSMUSG00000037572 Wdhd1 ENSMUST00000227041 ENSMUSP00000154026 TRANSLATION protein_coding start/stop - - 67.0 0.0 1.0 0.0 38.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037572 Wdhd1 ENSMUST00000111790 ENSMUSP00000107420 TRANSLATION protein_coding - - 2 641.0 0.0 12.09 0.0 332.3 0.0 -4,-5 0.0003 6 0.0 MINOR ENSMUSG00000037572 Wdhd1 ENSMUST00000111792 ENSMUSP00000107422 TRANSLATION protein_coding - - 5 1081.0 0.0 17.2375 0.0 444.0 0.0 -4,-5 0.3049 13 10.794 MINOR ENSMUSG00000022179 4931414P19Rik ENSMUST00000022786 ENSMUSP00000022786 TRANSLATION protein_coding - CCDS27094.1 1 541.0 0.0 0.0 11.4 863.1 0.0 -2,-3 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000022179 4931414P19Rik ENSMUST00000227280 ENSMUSP00000154754 TRANSLATION protein_coding start - - 39.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000022179 4931414P19Rik ENSMUST00000228422 - NO_TRANSLATION retained_intron ENSMUSG00000040651 Tasor ENSMUST00000223688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040651 Tasor ENSMUST00000225139 ENSMUSP00000153529 TRANSLATION protein_coding start - - 293.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0015 2 -2.0 MINOR ENSMUSG00000040651 Tasor ENSMUST00000223970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040651 Tasor ENSMUST00000022450 ENSMUSP00000022450 TRANSLATION protein_coding - CCDS49432.1 5 1498.0 0.0 5.11 0.0 180.0 0.0 -4,-5 1.0 31 12.0 PRINCIPAL:1 ENSMUSG00000091792 Gm3573 ENSMUST00000168673 ENSMUSP00000127488 TRANSLATION protein_coding - - 5 184.0 0.0 3.15 0.0 67.3 0.0 -4,-6 0.7377 - 12.0 PRINCIPAL:1 ENSMUSG00000042485 Mustn1 ENSMUST00000040715 ENSMUSP00000048427 TRANSLATION protein_coding - CCDS36849.1 1 82.0 0.0 1.4 8.7 131.7 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000071470 Ccnb1ip1 ENSMUST00000227614 ENSMUSP00000153980 TRANSLATION protein_coding stop - - 16.0 1.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000071470 Ccnb1ip1 ENSMUST00000095932 ENSMUSP00000093622 TRANSLATION protein_coding - CCDS49477.1 5 276.0 8.0 2.5 15.7 30.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000015437 Gzmb ENSMUST00000015581 ENSMUSP00000015581 TRANSLATION protein_coding - CCDS27147.1 1 247.0 6.0 4.0 1.1 227.7 0.0 4,-1 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000008813 Tppp2 ENSMUST00000008957 ENSMUSP00000008957 TRANSLATION protein_coding - CCDS49487.1 1 170.0 0.0 3.0 15.3 230.3 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000008813 Tppp2 ENSMUST00000177625 ENSMUSP00000136454 TRANSLATION protein_coding - CCDS49487.1 3 170.0 0.0 3.0 15.3 230.3 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000035932 Or6s1 ENSMUST00000048478 ENSMUSP00000036596 TRANSLATION protein_coding - CCDS27033.1 - 331.0 0.0 1.0 8.0 163.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035932 Or6s1 ENSMUST00000216202 ENSMUSP00000150180 TRANSLATION protein_coding - CCDS27033.1 5 331.0 0.0 1.0 8.0 163.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000076824 Trav14n-3 ENSMUST00000103652 ENSMUSP00000100429 TRANSLATION TR_V_gene stop - - 120.0 0.0 1.53 0.0 68.9 0.0 4,-1 0.8208 - -2.0 PRINCIPAL:5 ENSMUSG00000076824 Trav14n-3 ENSMUST00000103635 ENSMUSP00000100412 TRANSLATION TR_V_gene start/stop - - 93.0 0.0 1.0 0.0 68.9 0.0 -4,-5 0.0227 - -2.0 ALTERNATIVE:2 ENSMUSG00000094692 Or11g1 ENSMUST00000214320 ENSMUSP00000150067 TRANSLATION protein_coding - CCDS27014.1 5 311.0 0.0 1.0 9.4 169.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094692 Or11g1 ENSMUST00000214853 ENSMUSP00000150351 TRANSLATION protein_coding - CCDS27014.1 5 311.0 0.0 1.0 9.4 169.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094692 Or11g1 ENSMUST00000058972 ENSMUSP00000059540 TRANSLATION protein_coding - CCDS27014.1 - 311.0 0.0 1.0 9.4 169.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037712 Fermt2 ENSMUST00000150660 ENSMUSP00000120918 TRANSLATION protein_coding stop - 5 258.0 0.0 1.67 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000037712 Fermt2 ENSMUST00000141424 ENSMUSP00000118214 TRANSLATION protein_coding stop - 3 180.0 0.0 3.55 0.0 75.9 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000037712 Fermt2 ENSMUST00000045905 ENSMUSP00000044554 TRANSLATION protein_coding - CCDS26977.1 1 680.0 0.0 13.6 32.7 196.8 0.0 -4,-5 1.0 26 16.0 PRINCIPAL:1 ENSMUSG00000037712 Fermt2 ENSMUST00000149723 ENSMUSP00000153760 TRANSLATION protein_coding stop - 2 72.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037712 Fermt2 ENSMUST00000228208 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037712 Fermt2 ENSMUST00000228769 - NO_TRANSLATION retained_intron ENSMUSG00000023156 Rpp14 ENSMUST00000023924 ENSMUSP00000023924 TRANSLATION protein_coding - CCDS26809.1 1 122.0 0.0 3.5 7.8 35.4 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000023156 Rpp14 ENSMUST00000180369 ENSMUSP00000136494 TRANSLATION protein_coding - - - 158.0 4.0 1.0 0.1 65.8 0.0 -4,0 0.0604 4 5.002 MINOR ENSMUSG00000040618 Pck2 ENSMUST00000228921 ENSMUSP00000154072 TRANSLATION nonsense_mediated_decay start - - 108.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0005 1 -2.0 MINOR ENSMUSG00000040618 Pck2 ENSMUST00000228283 - NO_TRANSLATION retained_intron ENSMUSG00000040618 Pck2 ENSMUST00000226270 - NO_TRANSLATION retained_intron ENSMUSG00000040618 Pck2 ENSMUST00000228240 ENSMUSP00000154736 TRANSLATION protein_coding start - - 489.0 29.0 9.816 0.0 359.8 0.0 -4,-1 0.0022 16 -2.0 MINOR ENSMUSG00000040618 Pck2 ENSMUST00000226664 - NO_TRANSLATION retained_intron ENSMUSG00000040618 Pck2 ENSMUST00000226231 ENSMUSP00000154015 TRANSLATION protein_coding start/stop - - 160.0 6.0 2.9 0.0 37.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000040618 Pck2 ENSMUST00000048781 ENSMUSP00000038555 TRANSLATION protein_coding - CCDS27114.1 1 667.0 36.0 12.08 0.0 563.8 0.0 -4,0 0.2097 23 18.0 MINOR ENSMUSG00000040618 Pck2 ENSMUST00000226295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040618 Pck2 ENSMUST00000226650 ENSMUSP00000154245 TRANSLATION protein_coding start - - 599.0 35.0 11.08 0.0 486.7 0.0 -4,-1 0.0138 21 -2.0 MINOR ENSMUSG00000040618 Pck2 ENSMUST00000226519 ENSMUSP00000153733 TRANSLATION protein_coding - - - 640.0 36.0 12.08 14.2 563.8 0.0 -4,0 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000040618 Pck2 ENSMUST00000226352 ENSMUSP00000154762 TRANSLATION protein_coding - - - 609.0 36.0 11.08 0.0 542.5 0.0 -4,0 0.0239 21 14.724 MINOR ENSMUSG00000040618 Pck2 ENSMUST00000226514 - NO_TRANSLATION retained_intron ENSMUSG00000040618 Pck2 ENSMUST00000226770 - NO_TRANSLATION retained_intron ENSMUSG00000022039 Adam2 ENSMUST00000022618 ENSMUSP00000022618 TRANSLATION protein_coding - CCDS36959.1 1 735.0 14.0 5.87 0.4 469.5 0.0 1,-2 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000022039 Adam2 ENSMUST00000225667 - NO_TRANSLATION retained_intron ENSMUSG00000060523 Or4k15c ENSMUST00000215105 ENSMUSP00000150599 TRANSLATION protein_coding - CCDS27002.1 5 321.0 0.0 1.0 9.2 159.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060523 Or4k15c ENSMUST00000213345 ENSMUSP00000148885 TRANSLATION protein_coding - CCDS27002.1 2 321.0 0.0 1.0 9.2 159.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060523 Or4k15c ENSMUST00000217422 ENSMUSP00000149373 TRANSLATION protein_coding - CCDS27002.1 5 321.0 0.0 1.0 9.2 159.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060523 Or4k15c ENSMUST00000217025 ENSMUSP00000150116 TRANSLATION protein_coding - CCDS27002.1 5 321.0 0.0 1.0 9.2 159.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060523 Or4k15c ENSMUST00000072370 ENSMUSP00000072207 TRANSLATION protein_coding - CCDS27002.1 - 321.0 0.0 1.0 9.2 159.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060523 Or4k15c ENSMUST00000217319 ENSMUSP00000150594 TRANSLATION protein_coding - CCDS27002.1 5 321.0 0.0 1.0 9.2 159.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060523 Or4k15c ENSMUST00000206834 ENSMUSP00000145832 TRANSLATION protein_coding - CCDS27002.1 3 321.0 0.0 1.0 9.2 159.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060523 Or4k15c ENSMUST00000215278 ENSMUSP00000150634 TRANSLATION protein_coding - CCDS27002.1 3 321.0 0.0 1.0 9.2 159.1 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000072494 Ppp1r3e ENSMUST00000182700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072494 Ppp1r3e ENSMUST00000177403 ENSMUSP00000134894 TRANSLATION protein_coding - CCDS56958.1 5 279.0 0.0 1.0 9.8 77.4 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000072494 Ppp1r3e ENSMUST00000168622 ENSMUSP00000134915 TRANSLATION protein_coding - CCDS56958.1 5 279.0 0.0 1.0 9.8 77.4 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000072494 Ppp1r3e ENSMUST00000194094 - NO_TRANSLATION retained_intron ENSMUSG00000061524 Zic2 ENSMUST00000137059 - NO_TRANSLATION retained_intron ENSMUSG00000061524 Zic2 ENSMUST00000075888 ENSMUSP00000075283 TRANSLATION protein_coding - CCDS27349.1 1 529.0 21.0 1.5 8.4 66.6 0.0 -4,-2 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000094779 Trav13n-2 ENSMUST00000103622 ENSMUSP00000100399 TRANSLATION TR_V_gene start/stop - - 88.0 0.0 1.0 0.0 50.4 0.0 -4,-5 0.0771 - -2.0 ALTERNATIVE:2 ENSMUSG00000094779 Trav13n-2 ENSMUST00000196941 ENSMUSP00000143076 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.0 0.0 50.7 0.0 4,-1 0.8253 - -2.0 PRINCIPAL:5 ENSMUSG00000090716 Gm3371 ENSMUST00000249417 ENSMUSP00000159754 TRANSLATION protein_coding - - - 262.0 0.0 3.08 0.0 79.2 0.0 -4,-2 0.7648 - 12.0 PRINCIPAL:1 ENSMUSG00000096901 Gm3029 ENSMUST00000168306 ENSMUSP00000128438 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 73.1 0.0 -4,-5 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000059648 Rnase11 ENSMUST00000076106 ENSMUSP00000075472 TRANSLATION protein_coding - CCDS27031.1 - 192.0 0.0 0.0 0.1 0.0 0.0 3,-2 0.9519 - 0.0 PRINCIPAL:1 ENSMUSG00000094828 Trav3-3 ENSMUST00000183835 ENSMUSP00000139346 TRANSLATION TR_V_gene start/stop - - 92.0 0.0 1.0 0.0 58.6 0.0 -4,-5 0.0225 - -2.0 ALTERNATIVE:2 ENSMUSG00000094828 Trav3-3 ENSMUST00000181768 ENSMUSP00000137883 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.25 0.0 58.6 0.0 0,-3 0.8177 - -2.0 PRINCIPAL:5 ENSMUSG00000041068 4930596D02Rik ENSMUST00000043266 ENSMUSP00000039186 TRANSLATION protein_coding - CCDS49447.1 1 216.0 0.0 2.0 0.1 58.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021852 Slc35f4 ENSMUST00000138884 ENSMUSP00000119007 TRANSLATION protein_coding - - 1 335.0 0.0 5.0 0.0 22.7 12.0 -4,-6 0.0282 - 10.002 MINOR ENSMUSG00000021852 Slc35f4 ENSMUST00000123534 ENSMUSP00000122405 TRANSLATION protein_coding - - 1 313.0 0.0 2.6 0.0 0.0 9.0 -4,-5 0.0068 1 0.0 MINOR ENSMUSG00000021852 Slc35f4 ENSMUST00000146164 ENSMUSP00000154089 TRANSLATION protein_coding - - 1 196.0 0.0 1.6 0.0 0.0 4.0 -4,-5 0.0038 1 0.0 MINOR ENSMUSG00000021852 Slc35f4 ENSMUST00000074368 ENSMUSP00000073972 TRANSLATION protein_coding - CCDS26997.1 1 485.0 0.0 6.0 16.6 22.4 16.0 -4,-5 1.0 1 15.922 PRINCIPAL:1 ENSMUSG00000021852 Slc35f4 ENSMUST00000135254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021852 Slc35f4 ENSMUST00000227634 - NO_TRANSLATION retained_intron ENSMUSG00000053453 Thoc7 ENSMUST00000225317 - NO_TRANSLATION retained_intron ENSMUSG00000053453 Thoc7 ENSMUST00000225891 ENSMUSP00000153560 TRANSLATION protein_coding stop - - 169.0 0.0 4.25 0.0 117.8 0.0 -4,-5 0.0013 5 -2.0 MINOR ENSMUSG00000053453 Thoc7 ENSMUST00000223832 - NO_TRANSLATION retained_intron ENSMUSG00000053453 Thoc7 ENSMUST00000225325 ENSMUSP00000153123 TRANSLATION protein_coding - - - 200.0 0.0 5.03 4.5 135.5 0.0 -4,-5 0.2524 6 12.788 MINOR ENSMUSG00000053453 Thoc7 ENSMUST00000225202 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053453 Thoc7 ENSMUST00000224392 - NO_TRANSLATION retained_intron ENSMUSG00000053453 Thoc7 ENSMUST00000225559 ENSMUSP00000153618 TRANSLATION nonsense_mediated_decay start - - 122.0 0.0 3.33 0.0 120.6 0.0 -4,-5 0.0006 5 -2.0 MINOR ENSMUSG00000053453 Thoc7 ENSMUST00000226008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053453 Thoc7 ENSMUST00000225590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053453 Thoc7 ENSMUST00000224652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053453 Thoc7 ENSMUST00000224764 - NO_TRANSLATION retained_intron ENSMUSG00000053453 Thoc7 ENSMUST00000065865 ENSMUSP00000065819 TRANSLATION protein_coding - CCDS49403.1 1 204.0 0.0 5.03 18.8 135.5 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000053453 Thoc7 ENSMUST00000225401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053453 Thoc7 ENSMUST00000224015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037628 Cdkn3 ENSMUST00000228106 ENSMUSP00000154120 TRANSLATION nonsense_mediated_decay - - - 197.0 1.0 2.375 0.0 316.9 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000037628 Cdkn3 ENSMUST00000227149 ENSMUSP00000153781 TRANSLATION protein_coding - - - 197.0 1.0 2.375 0.0 316.9 0.0 -4,-5 0.0008 1 3.78 MINOR ENSMUSG00000037628 Cdkn3 ENSMUST00000226621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037628 Cdkn3 ENSMUST00000067426 ENSMUSP00000070575 TRANSLATION protein_coding - CCDS49466.1 1 211.0 10.0 4.455 3.7 384.6 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000047153 Khnyn ENSMUST00000227462 - NO_TRANSLATION retained_intron ENSMUSG00000047153 Khnyn ENSMUST00000228462 ENSMUSP00000153796 TRANSLATION nonsense_mediated_decay - - - 555.0 0.0 2.78 0.0 169.9 0.0 -4,-6 0.0 10 -2.0 MINOR ENSMUSG00000047153 Khnyn ENSMUST00000022831 ENSMUSP00000022831 TRANSLATION protein_coding - CCDS27134.1 1 671.0 0.0 4.78 2.0 208.5 0.0 -4,-6 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000089682 Bcl2l2 ENSMUST00000227108 ENSMUSP00000154395 TRANSLATION protein_coding stop - - 117.0 0.0 1.0 0.0 107.8 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000089682 Bcl2l2 ENSMUST00000022806 ENSMUSP00000022806 TRANSLATION protein_coding - CCDS27103.1 1 193.0 0.0 2.75 12.2 145.6 2.0 -4,-6 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000089682 Bcl2l2 ENSMUST00000172844 ENSMUSP00000133286 TRANSLATION protein_coding - - 5 79.0 0.0 1.75 0.0 0.0 2.0 -4,-7 0.0024 1 3.816 MINOR ENSMUSG00000089682 Bcl2l2 ENSMUST00000133397 ENSMUSP00000116385 TRANSLATION protein_coding - - 1 178.0 0.0 1.95 0.0 145.6 0.0 -4,-6 0.0037 5 10.254 MINOR ENSMUSG00000089682 Bcl2l2 ENSMUST00000131243 - NO_TRANSLATION retained_intron ENSMUSG00000043418 Lrit2 ENSMUST00000057176 ENSMUSP00000056642 TRANSLATION protein_coding - CCDS26951.1 1 549.0 0.0 0.72 2.0 134.6 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000043418 Lrit2 ENSMUST00000224104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071347 C1qtnf9 ENSMUST00000025940 ENSMUSP00000025940 TRANSLATION protein_coding - CCDS27178.1 1 333.0 0.0 0.8375 12.2 200.7 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000068697 Myoz1 ENSMUST00000225231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068697 Myoz1 ENSMUST00000090469 ENSMUSP00000087955 TRANSLATION protein_coding - CCDS36819.1 1 296.0 0.0 0.8 10.6 341.3 0.0 -4,-7 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000068697 Myoz1 ENSMUST00000224472 - NO_TRANSLATION retained_intron ENSMUSG00000068697 Myoz1 ENSMUST00000224436 - NO_TRANSLATION retained_intron ENSMUSG00000050961 AY358078 ENSMUST00000053821 ENSMUSP00000078129 TRANSLATION protein_coding - CCDS49485.1 1 465.0 0.0 3.0 0.0 80.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096656 Trav12-2 ENSMUST00000180972 ENSMUSP00000137851 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.1 0.0 45.4 0.0 1,-2 0.8207 - -2.0 PRINCIPAL:1 ENSMUSG00000021990 Spata13 ENSMUST00000159729 ENSMUSP00000125702 TRANSLATION protein_coding stop - 2 138.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021990 Spata13 ENSMUST00000162939 - NO_TRANSLATION retained_intron ENSMUSG00000021990 Spata13 ENSMUST00000160095 ENSMUSP00000123744 TRANSLATION protein_coding start/stop - 3 240.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 - -2.0 MINOR ENSMUSG00000021990 Spata13 ENSMUST00000022566 ENSMUSP00000022566 TRANSLATION protein_coding - CCDS49516.1 5 1244.0 0.0 6.95 0.4 230.4 0.0 -4,-5 0.509 11 12.0 MINOR ENSMUSG00000021990 Spata13 ENSMUST00000162945 ENSMUSP00000123888 TRANSLATION protein_coding - CCDS79328.1 1 574.0 0.0 6.95 21.9 230.4 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000021990 Spata13 ENSMUST00000159169 ENSMUSP00000125163 TRANSLATION protein_coding stop - 2 124.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021990 Spata13 ENSMUST00000160973 ENSMUSP00000123928 TRANSLATION protein_coding - CCDS49516.1 1 1244.0 0.0 6.95 0.4 230.4 0.0 -4,-5 0.509 11 12.0 MINOR ENSMUSG00000021990 Spata13 ENSMUST00000159135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021990 Spata13 ENSMUST00000162131 ENSMUSP00000124586 TRANSLATION protein_coding stop - 2 369.0 0.0 2.5 0.0 40.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025557 Slc15a1 ENSMUST00000227372 - NO_TRANSLATION retained_intron ENSMUSG00000025557 Slc15a1 ENSMUST00000088386 ENSMUSP00000085728 TRANSLATION protein_coding - CCDS37017.1 1 709.0 0.0 18.08 7.4 498.2 0.0 -4,-7 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000096003 Gm3500 ENSMUST00000177986 ENSMUSP00000137355 TRANSLATION protein_coding - CCDS56924.1 5 205.0 0.0 3.0 0.0 75.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022208 Jph4 ENSMUST00000132992 - NO_TRANSLATION retained_intron ENSMUSG00000022208 Jph4 ENSMUST00000133954 - NO_TRANSLATION retained_intron ENSMUSG00000022208 Jph4 ENSMUST00000124493 ENSMUSP00000121893 TRANSLATION protein_coding - CCDS27109.1 1 628.0 0.0 0.6 9.1 126.3 1.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000022208 Jph4 ENSMUST00000022819 ENSMUSP00000022819 TRANSLATION protein_coding - CCDS27109.1 1 628.0 0.0 0.6 9.1 126.3 1.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000045776 Lrtm1 ENSMUST00000055662 ENSMUSP00000061828 TRANSLATION protein_coding - CCDS26889.1 1 356.0 0.0 1.2 0.0 56.7 1.0 1,-3 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000045776 Lrtm1 ENSMUST00000224708 ENSMUSP00000153518 TRANSLATION protein_coding - - - 383.0 0.0 1.2 0.0 56.7 1.0 -4,-5 0.0947 1 8.0 ALTERNATIVE:2 ENSMUSG00000045776 Lrtm1 ENSMUST00000224760 ENSMUSP00000153372 TRANSLATION protein_coding - - - 234.0 0.0 0.96 0.0 56.7 0.0 1,-3 0.069 - 6.8 MINOR ENSMUSG00000015443 Gzmn ENSMUST00000225535 ENSMUSP00000153137 TRANSLATION protein_coding - - - 213.0 9.0 3.364 0.0 145.7 0.0 4,-1 0.0034 3 11.484 MINOR ENSMUSG00000015443 Gzmn ENSMUST00000015587 ENSMUSP00000015587 TRANSLATION protein_coding - CCDS27145.1 1 248.0 12.0 4.1 1.4 196.5 0.0 4,-1 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000021835 Bmp4 ENSMUST00000074077 ENSMUSP00000073720 TRANSLATION protein_coding - CCDS36897.1 1 408.0 0.0 0.6 16.7 296.7 0.0 3,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021835 Bmp4 ENSMUST00000135408 - NO_TRANSLATION retained_intron ENSMUSG00000021835 Bmp4 ENSMUST00000100676 ENSMUSP00000098242 TRANSLATION protein_coding - CCDS36897.1 1 408.0 0.0 0.6 16.7 296.7 0.0 3,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021835 Bmp4 ENSMUST00000226759 - NO_TRANSLATION retained_intron ENSMUSG00000121604 ENSMUSG00000121604 ENSMUST00000249662 ENSMUSP00000159841 TRANSLATION protein_coding - - - 27.0 0.0 0.0 0.0 0.0 0.0 -,- 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000091110 Gm2832 ENSMUST00000249370 ENSMUSP00000159728 TRANSLATION protein_coding - - - 156.0 0.0 3.0 0.0 80.0 0.0 -4,-2 0.05 - 8.0 ALTERNATIVE:2 ENSMUSG00000091110 Gm2832 ENSMUST00000249366 ENSMUSP00000159724 TRANSLATION protein_coding - - - 156.0 0.0 3.0 0.0 80.0 0.0 -4,-2 0.05 - 8.0 ALTERNATIVE:2 ENSMUSG00000091110 Gm2832 ENSMUST00000249369 ENSMUSP00000159727 TRANSLATION protein_coding - - - 175.0 0.0 3.0 0.0 80.0 0.0 -4,-1 0.0585 - 8.0 ALTERNATIVE:2 ENSMUSG00000091110 Gm2832 ENSMUST00000249372 ENSMUSP00000159730 TRANSLATION protein_coding - - - 156.0 0.0 3.0 0.0 80.0 0.0 -4,-2 0.05 - 8.0 ALTERNATIVE:2 ENSMUSG00000091110 Gm2832 ENSMUST00000249368 ENSMUSP00000159726 TRANSLATION protein_coding - - - 148.0 0.0 3.0 0.0 80.0 0.0 -4,-5 0.0148 - 8.0 ALTERNATIVE:2 ENSMUSG00000091110 Gm2832 ENSMUST00000249373 ENSMUSP00000159731 TRANSLATION protein_coding - - - 240.0 0.0 3.0 0.0 80.0 0.0 -4,-5 0.7308 - 8.0 PRINCIPAL:2 ENSMUSG00000091110 Gm2832 ENSMUST00000249367 ENSMUSP00000159725 TRANSLATION protein_coding - - - 166.0 0.0 2.6 0.0 80.0 0.0 -4,-2 0.0106 - 7.202 ALTERNATIVE:2 ENSMUSG00000091110 Gm2832 ENSMUST00000249371 ENSMUSP00000159729 TRANSLATION protein_coding - - - 172.0 0.0 3.0 0.0 80.0 0.0 -4,-6 0.0148 - 8.0 ALTERNATIVE:2 ENSMUSG00000075574 Defb48 ENSMUST00000100493 ENSMUSP00000098062 TRANSLATION protein_coding - CCDS36944.1 1 87.0 0.0 0.6 1.0 24.2 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000002324 Rec8 ENSMUST00000227922 - NO_TRANSLATION retained_intron ENSMUSG00000002324 Rec8 ENSMUST00000141425 - NO_TRANSLATION retained_intron ENSMUSG00000002324 Rec8 ENSMUST00000002395 ENSMUSP00000002395 TRANSLATION protein_coding - CCDS27120.1 1 591.0 0.0 0.325 0.8 153.3 0.0 -4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000002324 Rec8 ENSMUST00000155193 - NO_TRANSLATION retained_intron ENSMUSG00000072473 1700024G13Rik ENSMUST00000100723 ENSMUSP00000098289 TRANSLATION protein_coding - CCDS36867.1 1 93.0 0.0 2.75 29.2 139.4 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000093801 Trav14n-2 ENSMUST00000103623 ENSMUSP00000100400 TRANSLATION TR_V_gene start/stop - - 92.0 0.0 1.0 0.0 63.3 0.0 -4,-5 0.0225 - -2.0 ALTERNATIVE:2 ENSMUSG00000093801 Trav14n-2 ENSMUST00000197614 ENSMUSP00000143134 TRANSLATION TR_V_gene stop - - 121.0 0.0 1.43 0.0 63.3 0.0 3,-1 0.8217 - -2.0 PRINCIPAL:5 ENSMUSG00000022098 Bmp1 ENSMUST00000227944 ENSMUSP00000154121 TRANSLATION nonsense_mediated_decay start - - 57.0 0.0 1.5 0.0 43.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000022098 Bmp1 ENSMUST00000226906 ENSMUSP00000154610 TRANSLATION nonsense_mediated_decay - - - 194.0 0.0 2.0 0.0 45.8 0.0 3,-2 0.0 1 -2.0 MINOR ENSMUSG00000022098 Bmp1 ENSMUST00000226539 - NO_TRANSLATION retained_intron ENSMUSG00000022098 Bmp1 ENSMUST00000226601 - NO_TRANSLATION retained_intron ENSMUSG00000022098 Bmp1 ENSMUST00000226246 ENSMUSP00000154104 TRANSLATION nonsense_mediated_decay - - - 194.0 0.0 2.0 0.0 45.8 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000022098 Bmp1 ENSMUST00000228501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022098 Bmp1 ENSMUST00000022693 ENSMUSP00000022693 TRANSLATION protein_coding - CCDS36972.1 1 991.0 26.0 18.0 3.8 935.5 0.0 3,-2 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000037824 Tspan14 ENSMUST00000047652 ENSMUSP00000035263 TRANSLATION protein_coding - CCDS26956.1 1 270.0 0.0 3.28 36.0 206.9 4.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000037824 Tspan14 ENSMUST00000224209 ENSMUSP00000153208 TRANSLATION protein_coding - CCDS26956.1 - 270.0 0.0 3.28 36.0 206.9 4.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000037824 Tspan14 ENSMUST00000224349 - NO_TRANSLATION retained_intron ENSMUSG00000002319 Ipo4 ENSMUST00000228754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002319 Ipo4 ENSMUST00000146528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002319 Ipo4 ENSMUST00000148942 - NO_TRANSLATION retained_intron ENSMUSG00000002319 Ipo4 ENSMUST00000148351 ENSMUSP00000117543 TRANSLATION nonsense_mediated_decay - - 1 98.0 0.0 1.24 0.0 41.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000002319 Ipo4 ENSMUST00000125133 ENSMUSP00000154717 TRANSLATION protein_coding stop - 2 188.0 0.0 1.506 0.0 41.3 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000002319 Ipo4 ENSMUST00000141848 - NO_TRANSLATION retained_intron ENSMUSG00000002319 Ipo4 ENSMUST00000141499 ENSMUSP00000154260 TRANSLATION protein_coding start - 3 74.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002319 Ipo4 ENSMUST00000155464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002319 Ipo4 ENSMUST00000047131 ENSMUSP00000036555 TRANSLATION protein_coding - CCDS27121.1 1 1082.0 0.0 16.082 11.6 93.3 0.0 -4,-6 1.0 30 15.0 PRINCIPAL:1 ENSMUSG00000002319 Ipo4 ENSMUST00000150951 - NO_TRANSLATION retained_intron ENSMUSG00000002319 Ipo4 ENSMUST00000127773 - NO_TRANSLATION retained_intron ENSMUSG00000002319 Ipo4 ENSMUST00000135221 ENSMUSP00000123692 TRANSLATION nonsense_mediated_decay - - 1 818.0 0.0 9.832 0.0 63.4 0.0 -4,-6 0.0073 20 -2.0 MINOR ENSMUSG00000002319 Ipo4 ENSMUST00000126064 - NO_TRANSLATION retained_intron ENSMUSG00000052382 Rnase9 ENSMUST00000064214 ENSMUSP00000066637 TRANSLATION protein_coding - CCDS36909.1 1 184.0 0.0 1.0 0.4 73.7 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000021807 Rtraf ENSMUST00000225615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021807 Rtraf ENSMUST00000022341 ENSMUSP00000022341 TRANSLATION protein_coding - CCDS26839.1 1 244.0 0.0 0.0 33.2 306.8 0.0 -4,-5 1.0 14 10.0 PRINCIPAL:1 ENSMUSG00000022022 Mtrf1 ENSMUST00000022600 ENSMUSP00000022600 TRANSLATION protein_coding - CCDS27297.1 1 446.0 0.0 6.025 9.9 294.0 0.0 -4,0 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000022022 Mtrf1 ENSMUST00000227610 - NO_TRANSLATION retained_intron ENSMUSG00000096685 Gm3642 ENSMUST00000166895 ENSMUSP00000127087 TRANSLATION protein_coding - - 5 267.0 0.0 4.0 0.0 81.1 0.0 -4,-5 0.7383 - 12.0 PRINCIPAL:1 ENSMUSG00000063106 Or10g1 ENSMUST00000215928 ENSMUSP00000150294 TRANSLATION protein_coding - CCDS27058.1 3 318.0 0.0 0.8 9.7 166.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063106 Or10g1 ENSMUST00000079459 ENSMUSP00000078424 TRANSLATION protein_coding - CCDS27058.1 - 318.0 0.0 0.8 9.7 166.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022111 Uchl3 ENSMUST00000226521 - NO_TRANSLATION retained_intron ENSMUSG00000022111 Uchl3 ENSMUST00000002289 ENSMUSP00000002289 TRANSLATION protein_coding - CCDS27313.1 1 230.0 4.0 6.25 34.0 229.8 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000022111 Uchl3 ENSMUST00000228773 - NO_TRANSLATION retained_intron ENSMUSG00000022111 Uchl3 ENSMUST00000226340 ENSMUSP00000154032 TRANSLATION protein_coding start - - 265.0 4.0 5.25 0.0 177.8 0.0 -4,-7 0.0003 7 -2.0 MINOR ENSMUSG00000022111 Uchl3 ENSMUST00000227815 - NO_TRANSLATION retained_intron ENSMUSG00000068399 Gm7247 ENSMUST00000162998 ENSMUSP00000125409 TRANSLATION protein_coding - - 5 187.0 0.0 3.5 0.0 79.3 0.0 -4,-7 0.7346 - 12.0 PRINCIPAL:1 ENSMUSG00000022105 Rb1 ENSMUST00000163932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022105 Rb1 ENSMUST00000168495 - NO_TRANSLATION retained_intron ENSMUSG00000022105 Rb1 ENSMUST00000164624 ENSMUSP00000125967 TRANSLATION nonsense_mediated_decay - - 5 47.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000022105 Rb1 ENSMUST00000022701 ENSMUSP00000022701 TRANSLATION protein_coding - CCDS27267.1 1 921.0 0.0 15.87 4.4 681.2 0.0 -4,-7 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000022105 Rb1 ENSMUST00000170967 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022105 Rb1 ENSMUST00000169002 - NO_TRANSLATION retained_intron ENSMUSG00000021928 Ebpl ENSMUST00000223560 - NO_TRANSLATION retained_intron ENSMUSG00000021928 Ebpl ENSMUST00000022494 ENSMUSP00000022494 TRANSLATION protein_coding - CCDS27183.1 1 206.0 0.0 3.75 5.1 207.0 0.0 2,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000021928 Ebpl ENSMUST00000225112 - NO_TRANSLATION retained_intron ENSMUSG00000032925 Itgbl1 ENSMUST00000132026 ENSMUSP00000115455 TRANSLATION protein_coding start - 1 370.0 0.0 4.348 0.0 84.2 0.0 -4,-5 0.0014 5 -2.0 MINOR ENSMUSG00000032925 Itgbl1 ENSMUST00000142161 ENSMUSP00000121659 TRANSLATION nonsense_mediated_decay - - 1 210.0 0.0 2.25 0.0 23.1 0.0 2,-2 0.0008 3 -2.0 MINOR ENSMUSG00000032925 Itgbl1 ENSMUST00000049681 ENSMUSP00000059019 TRANSLATION protein_coding - CCDS27354.1 1 494.0 0.0 5.148 20.6 111.0 0.0 2,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000095463 Entpd4 ENSMUST00000183648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095463 Entpd4 ENSMUST00000064831 ENSMUSP00000065046 TRANSLATION protein_coding - CCDS27240.1 5 613.0 0.0 8.5 21.4 358.5 2.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000095463 Entpd4 ENSMUST00000184165 - NO_TRANSLATION retained_intron ENSMUSG00000095463 Entpd4 ENSMUST00000184973 ENSMUSP00000138944 TRANSLATION protein_coding - CCDS27240.1 1 613.0 0.0 8.5 21.4 358.5 2.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000095463 Entpd4 ENSMUST00000184234 - NO_TRANSLATION retained_intron ENSMUSG00000095463 Entpd4 ENSMUST00000184314 ENSMUSP00000138892 TRANSLATION protein_coding - - 1 102.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000022085 Pebp4 ENSMUST00000022678 ENSMUSP00000022678 TRANSLATION protein_coding - CCDS27245.1 1 242.0 8.0 4.7 0.1 0.0 0.0 2,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000094825 Gm3194 ENSMUST00000180867 ENSMUSP00000137682 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 75.5 0.0 -4,-5 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000079184 Mphosph8 ENSMUST00000130246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079184 Mphosph8 ENSMUST00000116468 ENSMUSP00000112170 TRANSLATION protein_coding - CCDS49504.1 1 858.0 0.0 8.15 3.4 119.4 0.0 -3,-4 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000079184 Mphosph8 ENSMUST00000152370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079184 Mphosph8 ENSMUST00000152606 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079184 Mphosph8 ENSMUST00000138174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021959 Lats2 ENSMUST00000173990 ENSMUSP00000133976 TRANSLATION protein_coding - - 1 895.0 18.0 2.8 0.0 188.0 0.0 -4,-2 0.014 3 16.122 MINOR ENSMUSG00000021959 Lats2 ENSMUST00000022531 ENSMUSP00000022531 TRANSLATION protein_coding - CCDS27158.1 1 1042.0 18.0 3.3 0.4 202.6 0.0 -4,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000021959 Lats2 ENSMUST00000173964 ENSMUSP00000134142 TRANSLATION protein_coding start/stop - 3 288.0 9.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021959 Lats2 ENSMUST00000174213 ENSMUSP00000134321 TRANSLATION nonsense_mediated_decay - - 1 119.0 0.0 0.4 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000021959 Lats2 ENSMUST00000038381 ENSMUSP00000038982 TRANSLATION protein_coding - - 1 225.0 0.0 0.4 0.0 0.0 0.0 -4,-2 0.0 2 0.198 MINOR ENSMUSG00000021959 Lats2 ENSMUST00000173077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021959 Lats2 ENSMUST00000174166 ENSMUSP00000133379 TRANSLATION protein_coding stop - 5 114.0 0.0 0.4 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000021959 Lats2 ENSMUST00000173732 ENSMUSP00000133857 TRANSLATION protein_coding stop - 3 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0185 - -2.0 MINOR ENSMUSG00000021959 Lats2 ENSMUST00000077981 ENSMUSP00000077130 TRANSLATION protein_coding - CCDS49508.1 1 176.0 0.0 0.4 0.0 0.0 0.0 -4,-2 0.0355 2 0.198 MINOR ENSMUSG00000034959 Rubcnl ENSMUST00000036072 ENSMUSP00000045566 TRANSLATION protein_coding - CCDS36977.1 1 675.0 13.0 5.7 0.0 213.0 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000034959 Rubcnl ENSMUST00000228689 - NO_TRANSLATION retained_intron ENSMUSG00000021767 Kat6b ENSMUST00000182732 - NO_TRANSLATION retained_intron ENSMUSG00000021767 Kat6b ENSMUST00000183055 - NO_TRANSLATION retained_intron ENSMUSG00000021767 Kat6b ENSMUST00000182964 ENSMUSP00000138421 TRANSLATION protein_coding - - 5 1872.0 44.0 9.25 0.0 340.3 0.0 -4,-5 0.3512 4 14.0 ALTERNATIVE:2 ENSMUSG00000021767 Kat6b ENSMUST00000226589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021767 Kat6b ENSMUST00000069648 ENSMUSP00000066693 TRANSLATION protein_coding - - 5 1872.0 44.0 9.25 0.0 340.3 0.0 -4,-5 0.3512 4 14.0 ALTERNATIVE:2 ENSMUSG00000021767 Kat6b ENSMUST00000182996 ENSMUSP00000138746 TRANSLATION protein_coding stop - 2 79.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021767 Kat6b ENSMUST00000183201 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021767 Kat6b ENSMUST00000182859 - NO_TRANSLATION retained_intron ENSMUSG00000021767 Kat6b ENSMUST00000182405 ENSMUSP00000138377 TRANSLATION protein_coding - CCDS59615.1 1 1763.0 44.0 9.25 0.0 340.3 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000021767 Kat6b ENSMUST00000096222 - NO_TRANSLATION retained_intron ENSMUSG00000021767 Kat6b ENSMUST00000238837 ENSMUSP00000159058 TRANSLATION protein_coding - - - 2054.0 44.0 9.25 0.0 340.3 0.0 -4,-5 0.3651 5 14.0 ALTERNATIVE:2 ENSMUSG00000021767 Kat6b ENSMUST00000183228 - NO_TRANSLATION retained_intron ENSMUSG00000021767 Kat6b ENSMUST00000182855 ENSMUSP00000138511 TRANSLATION protein_coding - CCDS59615.1 1 1763.0 44.0 9.25 0.0 340.3 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000061244 Exoc5 ENSMUST00000162175 ENSMUSP00000125434 TRANSLATION protein_coding - CCDS49474.1 1 708.0 0.0 10.442 27.1 502.2 0.0 -4,-5 1.0 24 16.0 PRINCIPAL:1 ENSMUSG00000061244 Exoc5 ENSMUST00000160386 ENSMUSP00000123825 TRANSLATION nonsense_mediated_decay start - 3 49.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000061244 Exoc5 ENSMUST00000160723 - NO_TRANSLATION retained_intron ENSMUSG00000061244 Exoc5 ENSMUST00000161504 ENSMUSP00000124012 TRANSLATION protein_coding - - 5 643.0 0.0 9.86 0.0 445.5 0.0 -4,-5 0.0077 20 7.434 MINOR ENSMUSG00000061244 Exoc5 ENSMUST00000159651 - NO_TRANSLATION retained_intron ENSMUSG00000061244 Exoc5 ENSMUST00000160833 - NO_TRANSLATION retained_intron ENSMUSG00000061244 Exoc5 ENSMUST00000160453 - NO_TRANSLATION retained_intron ENSMUSG00000100486 Gm4131 ENSMUST00000209021 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000100486 Gm4131 ENSMUST00000186010 ENSMUSP00000147049 TRANSLATION protein_coding - - 5 318.0 0.0 0.0 6.1 0.0 0.0 -4,-2 0.8505 - 2.0 PRINCIPAL:1 ENSMUSG00000022034 Esco2 ENSMUST00000022613 ENSMUSP00000022613 TRANSLATION protein_coding - CCDS27216.1 1 592.0 11.0 4.8 0.1 154.5 0.0 -4,-6 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000022034 Esco2 ENSMUST00000136920 - NO_TRANSLATION retained_intron ENSMUSG00000022034 Esco2 ENSMUST00000225853 ENSMUSP00000153210 TRANSLATION protein_coding stop - - 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022034 Esco2 ENSMUST00000131729 - NO_TRANSLATION retained_intron ENSMUSG00000022034 Esco2 ENSMUST00000224162 - NO_TRANSLATION retained_intron ENSMUSG00000076821 Trav8n-2 ENSMUST00000103632 ENSMUSP00000100409 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.3 0.0 60.5 0.0 4,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000090740 Gm17079 ENSMUST00000167231 ENSMUSP00000125788 TRANSLATION protein_coding - - 5 211.0 0.0 3.0 0.0 87.1 0.0 -4,-1 0.762 - 12.0 PRINCIPAL:1 ENSMUSG00000022180 Slc7a8 ENSMUST00000226646 - NO_TRANSLATION retained_intron ENSMUSG00000022180 Slc7a8 ENSMUST00000022787 ENSMUSP00000022787 TRANSLATION protein_coding - CCDS27101.1 1 531.0 0.0 10.0 17.0 131.7 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000095736 Trav7n-4 ENSMUST00000103609 ENSMUSP00000100386 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.5 0.0 69.8 0.0 3,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000063821 Dusp29 ENSMUST00000224735 ENSMUSP00000153223 TRANSLATION protein_coding - - - 168.0 1.0 2.0 0.0 0.0 0.0 -4,-5 0.0 4 4.752 MINOR ENSMUSG00000063821 Dusp29 ENSMUST00000073870 ENSMUSP00000073534 TRANSLATION protein_coding - CCDS26863.1 1 215.0 8.0 3.0 1.8 93.5 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000022156 Gzme ENSMUST00000089549 ENSMUSP00000086978 TRANSLATION protein_coding - CCDS27143.1 1 248.0 11.0 4.0 1.4 190.3 0.0 3,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000044286 Or5au1 ENSMUST00000216188 ENSMUSP00000149854 TRANSLATION protein_coding - CCDS27050.1 5 311.0 0.0 1.0 13.8 172.0 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000044286 Or5au1 ENSMUST00000214071 ENSMUSP00000150675 TRANSLATION protein_coding - CCDS27050.1 5 311.0 0.0 1.0 13.8 172.0 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000044286 Or5au1 ENSMUST00000214342 ENSMUSP00000150231 TRANSLATION protein_coding - CCDS27050.1 - 311.0 0.0 1.0 13.8 172.0 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000044286 Or5au1 ENSMUST00000216907 ENSMUSP00000151163 TRANSLATION protein_coding - CCDS27050.1 5 311.0 0.0 1.0 13.8 172.0 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000044286 Or5au1 ENSMUST00000052560 ENSMUSP00000063109 TRANSLATION protein_coding - CCDS27050.1 5 311.0 0.0 1.0 13.8 172.0 5.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000014453 Blk ENSMUST00000014597 ENSMUSP00000014597 TRANSLATION protein_coding - CCDS27200.1 1 499.0 16.0 9.63 15.2 445.4 0.0 -4,-7 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000014453 Blk ENSMUST00000224965 - NO_TRANSLATION retained_intron ENSMUSG00000072738 Gm16440 ENSMUST00000100900 ENSMUSP00000098460 TRANSLATION protein_coding - - 5 218.0 0.0 3.5 0.0 71.5 0.0 -4,-5 0.7384 - 12.0 PRINCIPAL:1 ENSMUSG00000053815 Or11g2 ENSMUST00000066457 ENSMUSP00000066496 TRANSLATION protein_coding - CCDS27019.1 - 323.0 0.0 1.0 1.5 163.1 7.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000053815 Or11g2 ENSMUST00000216690 ENSMUSP00000148954 TRANSLATION protein_coding - CCDS27019.1 5 323.0 0.0 1.0 1.5 163.1 7.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000053815 Or11g2 ENSMUST00000213668 ENSMUSP00000149164 TRANSLATION protein_coding - CCDS27019.1 5 323.0 0.0 1.0 1.5 163.1 7.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022064 Pibf1 ENSMUST00000226935 - NO_TRANSLATION retained_intron ENSMUSG00000022064 Pibf1 ENSMUST00000228246 - NO_TRANSLATION retained_intron ENSMUSG00000022064 Pibf1 ENSMUST00000228598 - NO_TRANSLATION retained_intron ENSMUSG00000022064 Pibf1 ENSMUST00000228288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022064 Pibf1 ENSMUST00000228354 - NO_TRANSLATION retained_intron ENSMUSG00000022064 Pibf1 ENSMUST00000227969 - NO_TRANSLATION retained_intron ENSMUSG00000022064 Pibf1 ENSMUST00000228279 - NO_TRANSLATION retained_intron ENSMUSG00000022064 Pibf1 ENSMUST00000022650 ENSMUSP00000022650 TRANSLATION protein_coding - CCDS36997.1 5 756.0 0.0 0.0 17.3 0.0 0.0 -4,-5 1.0 8 4.0 PRINCIPAL:1 ENSMUSG00000025279 Dnase1l3 ENSMUST00000026315 ENSMUSP00000026315 TRANSLATION protein_coding - CCDS26807.1 1 310.0 8.0 8.0 0.0 48.9 0.0 4,-1 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000025279 Dnase1l3 ENSMUST00000145234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075573 Defb47 ENSMUST00000100492 ENSMUSP00000098061 TRANSLATION protein_coding - CCDS36945.1 1 79.0 0.0 1.0 5.6 0.0 0.0 3,-2 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000091144 Phf11c ENSMUST00000166912 ENSMUSP00000131536 TRANSLATION protein_coding - CCDS49512.1 1 339.0 12.0 1.3 0.0 54.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000076893 Traj37 ENSMUST00000103705 ENSMUSP00000143604 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000021876 Rnase4 ENSMUST00000022428 ENSMUSP00000022428 TRANSLATION protein_coding - CCDS27035.1 1 148.0 5.0 1.0 9.4 138.5 0.0 3,-2 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000021876 Rnase4 ENSMUST00000169895 ENSMUSP00000127274 TRANSLATION protein_coding - CCDS27035.1 1 148.0 5.0 1.0 9.4 138.5 0.0 3,-2 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000022159 Rab2b ENSMUST00000174020 ENSMUSP00000134726 TRANSLATION nonsense_mediated_decay - - 5 71.0 12.0 2.08 0.0 67.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022159 Rab2b ENSMUST00000167116 ENSMUSP00000131145 TRANSLATION protein_coding - CCDS27052.1 1 216.0 23.0 6.01 20.7 206.3 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000022159 Rab2b ENSMUST00000172634 ENSMUSP00000134315 TRANSLATION nonsense_mediated_decay start - 5 45.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022159 Rab2b ENSMUST00000100631 ENSMUSP00000098197 TRANSLATION protein_coding - - 1 193.0 23.0 5.26 3.5 200.5 0.0 -4,-6 0.1048 1 16.66 MINOR ENSMUSG00000022159 Rab2b ENSMUST00000174585 - NO_TRANSLATION retained_intron ENSMUSG00000022159 Rab2b ENSMUST00000172488 ENSMUSP00000133787 TRANSLATION nonsense_mediated_decay - - 5 62.0 12.0 2.08 0.0 67.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022159 Rab2b ENSMUST00000022765 ENSMUSP00000022765 TRANSLATION protein_coding - CCDS27052.1 1 216.0 23.0 6.01 20.7 206.3 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000022159 Rab2b ENSMUST00000173046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037544 Dlgap5 ENSMUST00000043296 ENSMUSP00000040416 TRANSLATION protein_coding - CCDS26987.1 1 808.0 0.0 1.335 0.0 112.4 0.0 -4,0 1.0 10 6.0 PRINCIPAL:2 ENSMUSG00000037544 Dlgap5 ENSMUST00000177822 ENSMUSP00000137382 TRANSLATION protein_coding start - 2 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037544 Dlgap5 ENSMUST00000179392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037544 Dlgap5 ENSMUST00000180299 ENSMUSP00000153953 TRANSLATION protein_coding - - 2 758.0 0.0 1.335 0.0 112.4 0.0 -4,0 0.1456 9 6.0 ALTERNATIVE:2 ENSMUSG00000037544 Dlgap5 ENSMUST00000178773 - NO_TRANSLATION retained_intron ENSMUSG00000037544 Dlgap5 ENSMUST00000178661 ENSMUSP00000154283 TRANSLATION nonsense_mediated_decay - - 2 606.0 0.0 1.335 0.0 112.4 0.0 -4,0 0.1189 8 -2.0 MINOR ENSMUSG00000037544 Dlgap5 ENSMUST00000227174 - NO_TRANSLATION retained_intron ENSMUSG00000037544 Dlgap5 ENSMUST00000179465 - NO_TRANSLATION retained_intron ENSMUSG00000037544 Dlgap5 ENSMUST00000111778 ENSMUSP00000107408 TRANSLATION protein_coding start/stop - 5 303.0 0.0 0.96 0.0 82.2 0.0 -4,-2 0.0014 6 -2.0 MINOR ENSMUSG00000076922 Traj6 ENSMUST00000103734 ENSMUSP00000142705 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000091477 Gm5799 ENSMUST00000249498 ENSMUSP00000159779 TRANSLATION protein_coding - - - 248.0 0.0 4.2 0.0 83.1 0.0 -4,-7 0.0713 - 8.0 ALTERNATIVE:2 ENSMUSG00000091477 Gm5799 ENSMUST00000249493 ENSMUSP00000159774 TRANSLATION protein_coding - - - 256.0 0.0 4.2 0.0 83.1 0.0 -4,-7 0.7286 - 8.0 PRINCIPAL:2 ENSMUSG00000091477 Gm5799 ENSMUST00000249496 ENSMUSP00000159777 TRANSLATION protein_coding - - - 201.0 0.0 3.2 0.0 83.1 0.0 -4,-5 0.0003 - 6.002 MINOR ENSMUSG00000091477 Gm5799 ENSMUST00000249497 ENSMUSP00000159778 TRANSLATION protein_coding - - - 259.0 0.0 4.0 0.0 83.1 0.0 -4,-7 0.1336 - 7.598 ALTERNATIVE:2 ENSMUSG00000091477 Gm5799 ENSMUST00000249494 ENSMUSP00000159775 TRANSLATION protein_coding - - - 139.0 0.0 3.0 0.0 66.9 0.0 -4,-5 0.0005 - 3.6 MINOR ENSMUSG00000091477 Gm5799 ENSMUST00000249492 ENSMUSP00000159773 TRANSLATION protein_coding - - - 163.0 0.0 3.2 0.0 83.1 0.0 -4,-2 0.0138 - 6.002 MINOR ENSMUSG00000091477 Gm5799 ENSMUST00000249499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091477 Gm5799 ENSMUST00000249495 ENSMUSP00000159776 TRANSLATION protein_coding - - - 139.0 0.0 3.0 0.0 66.9 0.0 -4,-5 0.0005 - 3.6 MINOR ENSMUSG00000093985 Gm10406 ENSMUST00000100895 ENSMUSP00000098455 TRANSLATION protein_coding - CCDS49396.1 5 205.0 0.0 3.0 0.0 75.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000093985 Gm10406 ENSMUST00000170738 ENSMUSP00000130661 TRANSLATION protein_coding - CCDS49396.1 5 205.0 0.0 3.0 0.0 75.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072595 4930503E14Rik ENSMUST00000226475 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072595 4930503E14Rik ENSMUST00000100688 ENSMUSP00000098254 TRANSLATION protein_coding - CCDS36890.1 1 177.0 0.0 3.33 0.0 84.5 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072595 4930503E14Rik ENSMUST00000226164 ENSMUSP00000154312 TRANSLATION protein_coding stop - - 113.0 0.0 1.0 0.0 40.7 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000022044 Stmn4 ENSMUST00000120229 ENSMUSP00000113759 TRANSLATION protein_coding - CCDS79339.1 2 216.0 0.0 2.6 10.3 198.2 0.0 -4,-6 0.4783 2 13.436 MINOR ENSMUSG00000022044 Stmn4 ENSMUST00000134440 ENSMUSP00000123092 TRANSLATION protein_coding stop - 2 81.0 0.0 0.3 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022044 Stmn4 ENSMUST00000121955 ENSMUSP00000113788 TRANSLATION protein_coding - - 5 203.0 0.0 2.166 8.5 182.3 0.0 -4,-6 0.2285 2 11.204 MINOR ENSMUSG00000022044 Stmn4 ENSMUST00000118426 ENSMUSP00000113629 TRANSLATION protein_coding - CCDS79340.1 1 176.0 0.0 2.166 14.8 182.3 0.0 -4,-6 0.7369 2 12.176 MINOR ENSMUSG00000022044 Stmn4 ENSMUST00000074523 ENSMUSP00000074113 TRANSLATION protein_coding - CCDS27222.1 1 189.0 0.0 2.6 26.9 198.2 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022044 Stmn4 ENSMUST00000152093 ENSMUSP00000117000 TRANSLATION protein_coding stop - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022044 Stmn4 ENSMUST00000136192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022044 Stmn4 ENSMUST00000147477 - NO_TRANSLATION retained_intron ENSMUSG00000022044 Stmn4 ENSMUST00000123435 - NO_TRANSLATION retained_intron ENSMUSG00000021880 Rnase6 ENSMUST00000095923 ENSMUSP00000093613 TRANSLATION protein_coding - CCDS27037.1 1 153.0 5.0 1.0 2.3 139.7 0.0 -2,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000021880 Rnase6 ENSMUST00000226194 ENSMUSP00000154125 TRANSLATION protein_coding - CCDS27037.1 - 153.0 5.0 1.0 2.3 139.7 0.0 -2,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000021880 Rnase6 ENSMUST00000226210 ENSMUSP00000154794 TRANSLATION protein_coding stop - - 33.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000021880 Rnase6 ENSMUST00000228752 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022212 Cpne6 ENSMUST00000074225 ENSMUSP00000073847 TRANSLATION protein_coding - CCDS27112.1 1 557.0 4.0 11.6 11.0 391.8 0.0 -4,-5 1.0 16 15.0 PRINCIPAL:4 ENSMUSG00000022212 Cpne6 ENSMUST00000170155 - NO_TRANSLATION retained_intron ENSMUSG00000022212 Cpne6 ENSMUST00000171643 ENSMUSP00000128555 TRANSLATION protein_coding - CCDS27112.1 5 557.0 4.0 11.6 11.0 391.8 0.0 -4,-5 1.0 16 15.0 PRINCIPAL:4 ENSMUSG00000022212 Cpne6 ENSMUST00000165262 ENSMUSP00000132999 TRANSLATION protein_coding - CCDS49493.1 1 556.0 4.0 11.6 9.9 390.1 0.0 -4,-5 0.9893 16 14.67 ALTERNATIVE:1 ENSMUSG00000022212 Cpne6 ENSMUST00000165725 ENSMUSP00000130799 TRANSLATION nonsense_mediated_decay - - 5 126.0 0.0 1.4 0.0 35.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022212 Cpne6 ENSMUST00000163767 ENSMUSP00000126493 TRANSLATION protein_coding - CCDS27112.1 1 557.0 4.0 11.6 11.0 391.8 0.0 -4,-5 1.0 16 15.0 PRINCIPAL:4 ENSMUSG00000022212 Cpne6 ENSMUST00000169869 - NO_TRANSLATION retained_intron ENSMUSG00000022053 Ebf2 ENSMUST00000022637 ENSMUSP00000022637 TRANSLATION protein_coding - CCDS27228.1 1 575.0 4.0 10.1 22.2 613.3 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000022053 Ebf2 ENSMUST00000176161 ENSMUSP00000135500 TRANSLATION protein_coding - CCDS27228.1 1 575.0 4.0 10.1 22.2 613.3 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000022053 Ebf2 ENSMUST00000176029 ENSMUSP00000135782 TRANSLATION protein_coding - CCDS27228.1 1 575.0 4.0 10.1 22.2 613.3 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000022053 Ebf2 ENSMUST00000177231 - NO_TRANSLATION retained_intron ENSMUSG00000044703 Phf11a ENSMUST00000062307 ENSMUSP00000053146 TRANSLATION protein_coding - CCDS27169.1 1 293.0 8.0 1.5 0.1 67.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000090643 Gm3453 ENSMUST00000170686 ENSMUSP00000131479 TRANSLATION protein_coding - - 5 263.0 0.0 4.0 0.0 71.9 0.0 -4,-5 0.7338 - 12.0 PRINCIPAL:1 ENSMUSG00000021823 Vcl ENSMUST00000224380 ENSMUSP00000153447 TRANSLATION protein_coding start/stop - - 149.0 0.0 2.0 0.0 86.5 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000021823 Vcl ENSMUST00000022369 ENSMUSP00000022369 TRANSLATION protein_coding - CCDS26860.1 1 1066.0 0.0 20.75 27.6 992.6 0.0 -4,-5 1.0 61 16.0 PRINCIPAL:1 ENSMUSG00000021823 Vcl ENSMUST00000226113 - NO_TRANSLATION retained_intron ENSMUSG00000094607 Trav12d-3 ENSMUST00000177703 ENSMUSP00000137153 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.1 0.0 44.5 0.0 4,-1 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000091649 Phf11b ENSMUST00000166121 ENSMUSP00000127857 TRANSLATION protein_coding - CCDS49510.1 1 276.0 12.0 1.78 0.0 75.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000091296 Gm4181 ENSMUST00000170249 ENSMUSP00000130101 TRANSLATION protein_coding - - 1 184.0 0.0 3.15 0.0 79.8 0.0 -4,-6 0.7377 - 12.0 PRINCIPAL:1 ENSMUSG00000091296 Gm4181 ENSMUST00000226595 ENSMUSP00000153949 TRANSLATION nonsense_mediated_decay - - - 59.0 0.0 1.0 0.0 47.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021870 Slmap ENSMUST00000136635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021870 Slmap ENSMUST00000139075 ENSMUSP00000117816 TRANSLATION protein_coding - CCDS79284.1 1 845.0 0.0 6.38 10.3 59.8 1.0 -4,-7 1.0 37 11.0 PRINCIPAL:4 ENSMUSG00000021870 Slmap ENSMUST00000142679 ENSMUSP00000123072 TRANSLATION protein_coding start - 5 433.0 0.0 2.43 0.0 0.0 1.0 -4,-5 0.0023 27 -2.0 MINOR ENSMUSG00000021870 Slmap ENSMUST00000144737 - NO_TRANSLATION retained_intron ENSMUSG00000021870 Slmap ENSMUST00000125437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021870 Slmap ENSMUST00000136625 - NO_TRANSLATION retained_intron ENSMUSG00000021870 Slmap ENSMUST00000129920 - NO_TRANSLATION retained_intron ENSMUSG00000021870 Slmap ENSMUST00000145738 ENSMUSP00000117276 TRANSLATION protein_coding start - 1 477.0 0.0 2.43 0.0 0.0 1.0 -4,-5 0.0023 27 -2.0 MINOR ENSMUSG00000021870 Slmap ENSMUST00000127078 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021870 Slmap ENSMUST00000090359 ENSMUSP00000087836 TRANSLATION protein_coding - - 5 828.0 0.0 6.38 10.3 59.8 1.0 -4,-7 0.8023 37 11.0 ALTERNATIVE:1 ENSMUSG00000021870 Slmap ENSMUST00000102956 ENSMUSP00000100021 TRANSLATION protein_coding - CCDS26880.1 5 821.0 0.0 6.38 9.6 59.8 1.0 -4,-7 0.9588 36 10.775 ALTERNATIVE:1 ENSMUSG00000021870 Slmap ENSMUST00000112331 ENSMUSP00000107950 TRANSLATION protein_coding start - 5 690.0 0.0 4.38 0.0 0.0 1.0 -4,-6 0.0028 34 -2.0 MINOR ENSMUSG00000021870 Slmap ENSMUST00000038522 ENSMUSP00000046956 TRANSLATION protein_coding - CCDS26880.1 1 821.0 0.0 6.38 9.6 59.8 1.0 -4,-7 0.9588 36 10.775 ALTERNATIVE:1 ENSMUSG00000021870 Slmap ENSMUST00000134117 - NO_TRANSLATION retained_intron ENSMUSG00000021870 Slmap ENSMUST00000112330 ENSMUSP00000107949 TRANSLATION protein_coding - CCDS84099.1 5 790.0 0.0 6.38 10.3 59.8 1.0 -4,-7 0.913 36 11.0 ALTERNATIVE:1 ENSMUSG00000021870 Slmap ENSMUST00000146438 ENSMUSP00000123344 TRANSLATION protein_coding start/stop - 5 184.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000040123 Zmym5 ENSMUST00000039812 ENSMUSP00000043625 TRANSLATION protein_coding - CCDS49505.1 1 627.0 8.0 0.6 0.4 62.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000040123 Zmym5 ENSMUST00000173954 ENSMUSP00000134057 TRANSLATION protein_coding - CCDS49505.1 1 627.0 8.0 0.6 0.4 62.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000040123 Zmym5 ENSMUST00000224498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040123 Zmym5 ENSMUST00000225699 ENSMUSP00000153263 TRANSLATION nonsense_mediated_decay - - - 311.0 4.0 0.6 0.0 33.6 0.0 -4,-5 0.0492 2 -2.0 MINOR ENSMUSG00000040123 Zmym5 ENSMUST00000111285 ENSMUSP00000106916 TRANSLATION protein_coding - CCDS49505.1 5 627.0 8.0 0.6 0.4 62.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000021782 Dlg5 ENSMUST00000073687 ENSMUSP00000073367 TRANSLATION protein_coding - CCDS49416.1 1 1898.0 0.0 13.658 2.2 362.4 0.0 -4,-6 0.6043 17 12.38 MINOR ENSMUSG00000021782 Dlg5 ENSMUST00000166007 ENSMUSP00000127054 TRANSLATION protein_coding start - 1 228.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000021782 Dlg5 ENSMUST00000170112 ENSMUSP00000128735 TRANSLATION nonsense_mediated_decay start - 3 72.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021782 Dlg5 ENSMUST00000169880 ENSMUSP00000131986 TRANSLATION protein_coding start/stop - 3 205.0 0.0 1.9 0.0 112.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021782 Dlg5 ENSMUST00000167343 - NO_TRANSLATION retained_intron ENSMUSG00000021782 Dlg5 ENSMUST00000042009 ENSMUSP00000044852 TRANSLATION protein_coding start - 1 1572.0 0.0 11.758 0.0 248.6 0.0 -4,-7 0.0206 16 -2.0 MINOR ENSMUSG00000021782 Dlg5 ENSMUST00000090398 ENSMUSP00000087879 TRANSLATION protein_coding - CCDS49417.1 1 1921.0 0.0 13.658 7.3 362.4 0.0 -4,-6 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000021782 Dlg5 ENSMUST00000164638 - NO_TRANSLATION retained_intron ENSMUSG00000058690 Ccser2 ENSMUST00000067700 ENSMUSP00000068550 TRANSLATION protein_coding - CCDS84113.1 5 1038.0 0.0 0.0 3.6 0.0 0.0 -4,-5 0.4156 15 1.068 MINOR ENSMUSG00000058690 Ccser2 ENSMUST00000182558 - NO_TRANSLATION retained_intron ENSMUSG00000058690 Ccser2 ENSMUST00000182576 ENSMUSP00000138318 TRANSLATION protein_coding start - 5 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0088 1 -2.0 MINOR ENSMUSG00000058690 Ccser2 ENSMUST00000183007 ENSMUSP00000153624 TRANSLATION protein_coding - - 5 375.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0433 6 0.0 MINOR ENSMUSG00000058690 Ccser2 ENSMUST00000183316 ENSMUSP00000138100 TRANSLATION protein_coding start - 5 204.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0179 3 -2.0 MINOR ENSMUSG00000058690 Ccser2 ENSMUST00000182635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058690 Ccser2 ENSMUST00000090024 ENSMUSP00000087478 TRANSLATION protein_coding - CCDS26948.1 1 833.0 0.0 0.0 8.3 0.0 0.0 -4,-5 1.0 10 3.0 PRINCIPAL:2 ENSMUSG00000058690 Ccser2 ENSMUST00000182042 ENSMUSP00000138453 TRANSLATION protein_coding - CCDS84112.1 5 261.0 0.0 0.0 6.2 0.0 0.0 -4,-7 0.7197 3 2.136 ALTERNATIVE:1 ENSMUSG00000058690 Ccser2 ENSMUST00000182797 ENSMUSP00000138787 TRANSLATION protein_coding - - 5 277.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0514 3 0.0 MINOR ENSMUSG00000058690 Ccser2 ENSMUST00000183038 ENSMUSP00000138718 TRANSLATION protein_coding - CCDS26947.1 1 485.0 0.0 0.0 4.3 0.0 0.0 -4,-5 0.4847 8 1.356 MINOR ENSMUSG00000040726 Hesx1 ENSMUST00000035433 ENSMUSP00000041999 TRANSLATION protein_coding - CCDS26884.1 1 185.0 0.0 2.2 9.5 82.7 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040726 Hesx1 ENSMUST00000224331 ENSMUSP00000152952 TRANSLATION protein_coding - CCDS26884.1 - 185.0 0.0 2.2 9.5 82.7 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033166 Dis3 ENSMUST00000042471 ENSMUSP00000041906 TRANSLATION protein_coding - CCDS49555.1 5 958.0 4.0 17.473 3.3 402.8 0.0 -4,-2 1.0 25 17.0 PRINCIPAL:1 ENSMUSG00000033166 Dis3 ENSMUST00000228643 ENSMUSP00000154479 TRANSLATION nonsense_mediated_decay - - - 566.0 4.0 9.775 0.0 173.8 0.0 -4,-2 0.0011 12 -2.0 MINOR ENSMUSG00000033166 Dis3 ENSMUST00000227022 ENSMUSP00000154489 TRANSLATION nonsense_mediated_decay - - - 116.0 3.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000033166 Dis3 ENSMUST00000227001 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033166 Dis3 ENSMUST00000228756 - NO_TRANSLATION retained_intron ENSMUSG00000033166 Dis3 ENSMUST00000228449 - NO_TRANSLATION retained_intron ENSMUSG00000105216 Traj47 ENSMUST00000197949 ENSMUSP00000142372 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000040760 Appl1 ENSMUST00000142261 - NO_TRANSLATION retained_intron ENSMUSG00000040760 Appl1 ENSMUST00000224406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040760 Appl1 ENSMUST00000141599 - NO_TRANSLATION retained_intron ENSMUSG00000040760 Appl1 ENSMUST00000142645 - NO_TRANSLATION retained_intron ENSMUSG00000040760 Appl1 ENSMUST00000036570 ENSMUSP00000042875 TRANSLATION protein_coding - CCDS26883.1 1 707.0 0.0 13.08 29.3 281.2 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000035960 Apex1 ENSMUST00000128395 ENSMUSP00000116319 TRANSLATION protein_coding start - 5 289.0 0.0 4.33 0.0 74.4 0.0 -4,-5 0.0033 12 -2.0 MINOR ENSMUSG00000035960 Apex1 ENSMUST00000049411 ENSMUSP00000042602 TRANSLATION protein_coding - CCDS27027.1 1 317.0 0.0 5.08 20.2 77.7 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000035960 Apex1 ENSMUST00000154288 ENSMUSP00000122343 TRANSLATION protein_coding stop - 2 214.0 0.0 4.08 0.0 53.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000035960 Apex1 ENSMUST00000136753 ENSMUSP00000123148 TRANSLATION protein_coding stop - 2 177.0 0.0 3.08 0.0 33.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000095495 Trav9d-3 ENSMUST00000178252 ENSMUSP00000136492 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.0 0.0 52.8 0.0 3,-1 0.8257 - -2.0 PRINCIPAL:1 ENSMUSG00000045306 Or4m1 ENSMUST00000050928 ENSMUSP00000057376 TRANSLATION protein_coding - CCDS27010.1 - 313.0 0.0 1.0 11.4 134.7 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045306 Or4m1 ENSMUST00000216732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045306 Or4m1 ENSMUST00000217152 ENSMUSP00000150732 TRANSLATION protein_coding - CCDS27010.1 5 313.0 0.0 1.0 11.4 134.7 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096615 Trav11 ENSMUST00000103585 ENSMUSP00000100362 TRANSLATION TR_V_gene stop - - 114.0 3.0 1.25 0.0 49.3 0.0 4,-1 0.8302 - -2.0 PRINCIPAL:1 ENSMUSG00000068417 Pnp2 ENSMUST00000228593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068417 Pnp2 ENSMUST00000095925 ENSMUSP00000093615 TRANSLATION protein_coding - CCDS49479.1 1 305.0 12.0 5.0 0.0 180.2 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000096600 Trav6d-3 ENSMUST00000184883 ENSMUSP00000139137 TRANSLATION TR_V_gene start/stop - - 102.0 0.0 1.0 0.0 40.0 0.0 -4,-5 0.0698 - -2.0 ALTERNATIVE:2 ENSMUSG00000096600 Trav6d-3 ENSMUST00000181483 ENSMUSP00000137760 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 40.0 0.0 3,-1 0.8219 - -2.0 PRINCIPAL:5 ENSMUSG00000061517 Sox21 ENSMUST00000170662 ENSMUSP00000127396 TRANSLATION protein_coding - CCDS27334.1 - 276.0 0.0 0.6 4.3 125.7 0.0 -4,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000109649 Gm45521 ENSMUST00000211339 ENSMUSP00000147554 TRANSLATION protein_coding - - 5 198.0 0.0 0.0 0.1 0.0 0.0 -4,-6 0.574 - 0.0 PRINCIPAL:1 ENSMUSG00000040818 Dennd6a ENSMUST00000224378 ENSMUSP00000153200 TRANSLATION protein_coding - - - 255.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 3 0.0 MINOR ENSMUSG00000040818 Dennd6a ENSMUST00000224111 ENSMUSP00000153187 TRANSLATION protein_coding - - - 381.0 0.0 0.0 1.0 0.0 0.0 -4,-7 0.0636 6 0.0 MINOR ENSMUSG00000040818 Dennd6a ENSMUST00000203874 ENSMUSP00000144906 TRANSLATION protein_coding - CCDS84101.1 1 559.0 0.0 0.0 0.0 33.5 0.0 -4,-6 0.1342 6 6.0 MINOR ENSMUSG00000040818 Dennd6a ENSMUST00000037585 ENSMUSP00000039361 TRANSLATION protein_coding - CCDS49430.1 1 605.0 0.0 0.0 11.0 33.5 0.0 -4,-6 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000040818 Dennd6a ENSMUST00000225206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040818 Dennd6a ENSMUST00000224248 ENSMUSP00000152966 TRANSLATION protein_coding - - - 381.0 0.0 0.0 1.0 0.0 0.0 -4,-7 0.0636 6 0.0 MINOR ENSMUSG00000096900 Trav9-1 ENSMUST00000103581 ENSMUSP00000100358 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 54.8 0.0 3,-2 0.824 - -2.0 PRINCIPAL:1 ENSMUSG00000033214 Slitrk5 ENSMUST00000227891 ENSMUSP00000154387 TRANSLATION protein_coding stop - - 132.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000033214 Slitrk5 ENSMUST00000042767 ENSMUSP00000041499 TRANSLATION protein_coding - CCDS27328.1 2 957.0 0.0 0.7 8.6 111.4 0.0 -4,-7 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000023243 Kcnk5 ENSMUST00000024011 ENSMUSP00000024011 TRANSLATION protein_coding - CCDS26841.1 1 502.0 0.0 4.4 9.2 108.7 0.0 -2,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000023243 Kcnk5 ENSMUST00000225552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035067 Xkr6 ENSMUST00000176862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035067 Xkr6 ENSMUST00000177500 ENSMUSP00000135609 TRANSLATION nonsense_mediated_decay start - 5 92.0 0.0 0.0 0.0 27.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000035067 Xkr6 ENSMUST00000176510 ENSMUSP00000134975 TRANSLATION nonsense_mediated_decay start - 5 209.0 0.0 0.0 0.0 83.9 1.0 -4,-7 0.002 3 -2.0 MINOR ENSMUSG00000035067 Xkr6 ENSMUST00000119973 ENSMUSP00000113708 TRANSLATION protein_coding - CCDS27204.2 1 638.0 0.0 0.0 5.0 409.8 7.0 -4,-5 1.0 6 7.305 PRINCIPAL:1 ENSMUSG00000035067 Xkr6 ENSMUST00000120820 ENSMUSP00000112691 TRANSLATION protein_coding - - 1 382.0 0.0 0.0 10.2 298.6 6.0 -4,-2 0.7115 2 3.0 MINOR ENSMUSG00000060579 Fhit ENSMUST00000161179 - NO_TRANSLATION retained_intron ENSMUSG00000060579 Fhit ENSMUST00000160956 ENSMUSP00000123820 TRANSLATION protein_coding stop - 3 57.0 8.0 1.75 0.0 34.3 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000060579 Fhit ENSMUST00000161895 ENSMUSP00000124957 TRANSLATION protein_coding stop - 3 124.0 15.0 3.99 0.0 90.9 0.0 -4,-2 0.012 5 -2.0 MINOR ENSMUSG00000060579 Fhit ENSMUST00000160340 ENSMUSP00000124017 TRANSLATION protein_coding - CCDS79263.1 5 213.0 15.0 4.74 0.0 90.9 0.0 -4,-7 0.0851 6 18.0 MINOR ENSMUSG00000060579 Fhit ENSMUST00000161302 ENSMUSP00000123874 TRANSLATION protein_coding - CCDS49400.1 1 150.0 15.0 4.74 25.3 90.9 0.0 -4,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000060579 Fhit ENSMUST00000162278 ENSMUSP00000124073 TRANSLATION protein_coding - CCDS49400.1 1 150.0 15.0 4.74 25.3 90.9 0.0 -4,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000060579 Fhit ENSMUST00000179394 ENSMUSP00000136011 TRANSLATION protein_coding - CCDS49400.1 5 150.0 15.0 4.74 25.3 90.9 0.0 -4,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000060579 Fhit ENSMUST00000162817 ENSMUSP00000124500 TRANSLATION protein_coding stop - 5 100.0 15.0 3.16 0.0 86.1 0.0 -4,-2 0.013 3 -2.0 MINOR ENSMUSG00000053754 Chd8 ENSMUST00000147827 - NO_TRANSLATION retained_intron ENSMUSG00000053754 Chd8 ENSMUST00000089752 ENSMUSP00000087184 TRANSLATION protein_coding - CCDS36919.1 1 2582.0 0.0 10.46 8.1 422.9 0.0 -4,-5 1.0 24 15.0 PRINCIPAL:1 ENSMUSG00000053754 Chd8 ENSMUST00000149694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053754 Chd8 ENSMUST00000227897 ENSMUSP00000154595 TRANSLATION protein_coding start/stop - - 138.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000053754 Chd8 ENSMUST00000226625 - NO_TRANSLATION retained_intron ENSMUSG00000053754 Chd8 ENSMUST00000147309 - NO_TRANSLATION retained_intron ENSMUSG00000053754 Chd8 ENSMUST00000145404 - NO_TRANSLATION retained_intron ENSMUSG00000053754 Chd8 ENSMUST00000199135 - NO_TRANSLATION retained_intron ENSMUSG00000053754 Chd8 ENSMUST00000226307 ENSMUSP00000154509 TRANSLATION protein_coding stop - - 22.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0222 - -2.0 MINOR ENSMUSG00000053754 Chd8 ENSMUST00000226681 - NO_TRANSLATION retained_intron ENSMUSG00000053754 Chd8 ENSMUST00000122823 - NO_TRANSLATION retained_intron ENSMUSG00000053754 Chd8 ENSMUST00000136528 - NO_TRANSLATION retained_intron ENSMUSG00000053754 Chd8 ENSMUST00000155614 - NO_TRANSLATION retained_intron ENSMUSG00000053754 Chd8 ENSMUST00000149975 ENSMUSP00000122995 TRANSLATION protein_coding start/stop - 5 1031.0 0.0 1.5 0.0 58.8 0.0 -4,-6 0.0087 8 -2.0 MINOR ENSMUSG00000053754 Chd8 ENSMUST00000200169 ENSMUSP00000142890 TRANSLATION protein_coding - CCDS36919.1 5 2582.0 0.0 10.46 8.1 422.9 0.0 -4,-5 1.0 24 15.0 PRINCIPAL:1 ENSMUSG00000053754 Chd8 ENSMUST00000134329 - NO_TRANSLATION retained_intron ENSMUSG00000049092 Gpr137c ENSMUST00000227056 ENSMUSP00000153906 TRANSLATION protein_coding start - - 147.0 0.0 0.0 0.0 0.0 9.0 -3,-6 0.0253 - -2.0 MINOR ENSMUSG00000049092 Gpr137c ENSMUST00000227009 ENSMUSP00000153737 TRANSLATION protein_coding - - - 154.0 0.0 0.0 0.0 0.0 9.0 -4,-2 0.0388 - 0.0 MINOR ENSMUSG00000049092 Gpr137c ENSMUST00000227086 ENSMUSP00000154316 TRANSLATION protein_coding - - - 204.0 0.0 0.0 0.0 0.0 9.0 -4,-2 0.0473 - 0.0 MINOR ENSMUSG00000049092 Gpr137c ENSMUST00000226915 ENSMUSP00000154462 TRANSLATION protein_coding start - - 112.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0167 - -2.0 MINOR ENSMUSG00000049092 Gpr137c ENSMUST00000146150 ENSMUSP00000120015 TRANSLATION protein_coding - CCDS49464.1 5 423.0 0.0 0.0 5.3 0.0 12.0 -4,-2 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000049092 Gpr137c ENSMUST00000151749 ENSMUSP00000154701 TRANSLATION nonsense_mediated_decay start - 3 52.0 0.0 0.0 0.0 0.0 0.0 0,-5 0.0403 - -2.0 MINOR ENSMUSG00000049092 Gpr137c ENSMUST00000147957 ENSMUSP00000153745 TRANSLATION protein_coding - - 1 173.0 0.0 0.0 0.0 0.0 9.0 -4,-2 0.0383 - 0.0 MINOR ENSMUSG00000068289 Cma2 ENSMUST00000228263 ENSMUSP00000154424 TRANSLATION protein_coding - - - 190.0 9.0 3.2 0.0 140.1 0.0 -4,-5 0.0004 - 11.85 MINOR ENSMUSG00000068289 Cma2 ENSMUST00000089555 ENSMUSP00000086984 TRANSLATION protein_coding - CCDS27136.1 1 246.0 11.0 4.0 0.1 193.7 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000048153 Or6e1 ENSMUST00000216214 ENSMUSP00000149840 TRANSLATION protein_coding - CCDS27085.1 5 313.0 0.0 1.0 9.7 169.6 4.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048153 Or6e1 ENSMUST00000059996 ENSMUSP00000054361 TRANSLATION protein_coding - CCDS27085.1 - 313.0 0.0 1.0 9.7 169.6 4.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022092 Ppp3cc ENSMUST00000078434 ENSMUSP00000077532 TRANSLATION protein_coding - CCDS36968.1 1 513.0 10.0 8.07 2.4 124.1 0.0 -4,-2 0.8505 4 15.538 MINOR ENSMUSG00000022092 Ppp3cc ENSMUST00000228911 ENSMUSP00000153725 TRANSLATION protein_coding - - - 522.0 10.0 9.65 3.0 124.1 0.0 -4,-2 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000022092 Ppp3cc ENSMUST00000228265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079402 Gm3020 ENSMUST00000167430 ENSMUSP00000127384 TRANSLATION protein_coding - - 1 150.0 0.0 3.0 0.0 68.4 0.0 -4,-5 0.7361 - 12.0 PRINCIPAL:1 ENSMUSG00000000197 Nalcn ENSMUST00000000201 ENSMUSP00000000201 TRANSLATION protein_coding - CCDS37023.1 5 1739.0 0.0 20.47 25.6 474.5 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000000197 Nalcn ENSMUST00000227541 - NO_TRANSLATION retained_intron ENSMUSG00000000197 Nalcn ENSMUST00000228789 - NO_TRANSLATION retained_intron ENSMUSG00000000197 Nalcn ENSMUST00000226617 - NO_TRANSLATION retained_intron ENSMUSG00000000197 Nalcn ENSMUST00000228766 - NO_TRANSLATION retained_intron ENSMUSG00000000197 Nalcn ENSMUST00000228860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000197 Nalcn ENSMUST00000227818 - NO_TRANSLATION retained_intron ENSMUSG00000021947 Cryl1 ENSMUST00000223986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021947 Cryl1 ENSMUST00000022517 ENSMUSP00000022517 TRANSLATION protein_coding - CCDS27155.1 1 319.0 24.0 7.5 14.4 229.4 0.0 -2,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000021947 Cryl1 ENSMUST00000225765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021947 Cryl1 ENSMUST00000224292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021917 Spcs1 ENSMUST00000227838 - NO_TRANSLATION retained_intron ENSMUSG00000021917 Spcs1 ENSMUST00000228767 ENSMUSP00000154167 TRANSLATION protein_coding - - - 108.0 0.0 0.81 0.0 0.0 1.0 -4,-7 0.0007 2 2.172 MINOR ENSMUSG00000021917 Spcs1 ENSMUST00000226782 ENSMUSP00000154282 TRANSLATION protein_coding - CCDS26903.2 - 161.0 0.0 2.24 0.0 105.0 3.0 -4,-7 0.2327 3 12.0 MINOR ENSMUSG00000021917 Spcs1 ENSMUST00000186131 ENSMUSP00000139654 TRANSLATION protein_coding - CCDS26903.2 1 161.0 0.0 2.24 0.0 105.0 3.0 -4,-7 0.2327 3 12.0 MINOR ENSMUSG00000021917 Spcs1 ENSMUST00000228736 ENSMUSP00000154732 TRANSLATION protein_coding - - - 102.0 0.0 2.24 19.9 105.0 3.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021917 Spcs1 ENSMUST00000226374 ENSMUSP00000154169 TRANSLATION protein_coding - - - 134.0 0.0 1.64 0.0 59.3 2.0 -4,-7 0.0018 1 7.65 MINOR ENSMUSG00000021917 Spcs1 ENSMUST00000226290 - NO_TRANSLATION retained_intron ENSMUSG00000076909 Traj20 ENSMUST00000103721 ENSMUSP00000143213 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000022131 Gpr180 ENSMUST00000022728 ENSMUSP00000022728 TRANSLATION protein_coding - CCDS27333.1 1 441.0 0.0 1.49 12.4 282.9 0.0 1,2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000041594 Tmtc4 ENSMUST00000126867 ENSMUSP00000116379 TRANSLATION protein_coding - CCDS27352.1 5 741.0 0.0 10.6 22.9 237.6 11.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000041594 Tmtc4 ENSMUST00000135917 - NO_TRANSLATION retained_intron ENSMUSG00000041594 Tmtc4 ENSMUST00000037726 ENSMUSP00000046368 TRANSLATION protein_coding - CCDS27352.1 1 741.0 0.0 10.6 22.9 237.6 11.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000041594 Tmtc4 ENSMUST00000143189 ENSMUSP00000116480 TRANSLATION nonsense_mediated_decay - - 1 306.0 0.0 3.585 0.0 0.0 7.0 -4,-6 0.0048 - -2.0 MINOR ENSMUSG00000041594 Tmtc4 ENSMUST00000126494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041594 Tmtc4 ENSMUST00000228661 - NO_TRANSLATION retained_intron ENSMUSG00000041594 Tmtc4 ENSMUST00000153496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041594 Tmtc4 ENSMUST00000148661 ENSMUSP00000121523 TRANSLATION protein_coding - CCDS27352.1 1 741.0 0.0 10.6 22.9 237.6 11.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000041594 Tmtc4 ENSMUST00000141478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041594 Tmtc4 ENSMUST00000128969 ENSMUSP00000118814 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041594 Tmtc4 ENSMUST00000125900 - NO_TRANSLATION retained_intron ENSMUSG00000041594 Tmtc4 ENSMUST00000228552 - NO_TRANSLATION retained_intron ENSMUSG00000041594 Tmtc4 ENSMUST00000227430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072739 Gm10408 ENSMUST00000096168 ENSMUSP00000093882 TRANSLATION protein_coding - CCDS56913.1 5 218.0 0.0 3.5 0.0 68.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079386 Gm3173 ENSMUST00000112776 ENSMUSP00000108396 TRANSLATION protein_coding - - 5 172.0 0.0 3.0 0.0 67.3 0.0 -4,-5 0.7366 - 12.0 PRINCIPAL:1 ENSMUSG00000076908 Traj21 ENSMUST00000103720 ENSMUSP00000143434 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000076898 Traj31 ENSMUST00000103710 ENSMUSP00000142343 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000046523 Kctd4 ENSMUST00000050120 ENSMUSP00000061734 TRANSLATION protein_coding - CCDS27282.1 1 259.0 0.0 1.0 20.9 65.4 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000039081 Zfp503 ENSMUST00000043409 ENSMUSP00000046641 TRANSLATION protein_coding - CCDS36822.1 1 652.0 4.0 0.0 2.5 99.1 0.0 -4,-6 1.0 7 11.0 PRINCIPAL:1 ENSMUSG00000096746 Trav7d-3 ENSMUST00000179789 ENSMUSP00000136195 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.5 0.0 71.9 0.0 3,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000022219 Cideb ENSMUST00000136270 - NO_TRANSLATION retained_intron ENSMUSG00000022219 Cideb ENSMUST00000001497 ENSMUSP00000001497 TRANSLATION protein_coding - CCDS27127.1 1 219.0 0.0 4.1 8.9 96.2 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000040040 Ift88 ENSMUST00000171682 ENSMUSP00000130475 TRANSLATION nonsense_mediated_decay start - 5 175.0 0.0 0.936 0.0 36.9 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000040040 Ift88 ENSMUST00000150296 ENSMUSP00000120286 TRANSLATION nonsense_mediated_decay - - 5 54.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040040 Ift88 ENSMUST00000154492 - NO_TRANSLATION retained_intron ENSMUSG00000040040 Ift88 ENSMUST00000122063 ENSMUSP00000113768 TRANSLATION protein_coding - CCDS36937.2 1 825.0 0.0 3.795 23.9 100.4 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000040040 Ift88 ENSMUST00000139943 - NO_TRANSLATION retained_intron ENSMUSG00000090487 Gm2888 ENSMUST00000170521 ENSMUSP00000132602 TRANSLATION protein_coding - - 5 267.0 0.0 4.0 0.0 71.9 0.0 -4,-5 0.7383 - 12.0 PRINCIPAL:1 ENSMUSG00000021877 Arf4 ENSMUST00000022429 ENSMUSP00000022429 TRANSLATION protein_coding - CCDS26881.1 1 180.0 23.0 5.41 36.9 250.3 0.0 -4,-1 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000021877 Arf4 ENSMUST00000224138 - NO_TRANSLATION retained_intron ENSMUSG00000021877 Arf4 ENSMUST00000171207 - NO_TRANSLATION retained_intron ENSMUSG00000021877 Arf4 ENSMUST00000112318 ENSMUSP00000107937 TRANSLATION protein_coding - - 5 153.0 17.0 4.66 0.0 180.4 0.0 -4,-1 0.0002 3 8.304 MINOR ENSMUSG00000021877 Arf4 ENSMUST00000166075 ENSMUSP00000132159 TRANSLATION nonsense_mediated_decay - - 5 64.0 11.0 1.995 0.0 56.0 0.0 -4,0 0.0003 - -2.0 MINOR ENSMUSG00000021877 Arf4 ENSMUST00000171282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021877 Arf4 ENSMUST00000167376 ENSMUSP00000127272 TRANSLATION nonsense_mediated_decay start - 5 60.0 4.0 1.5 0.0 51.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022120 Obi1 ENSMUST00000228210 ENSMUSP00000153932 TRANSLATION nonsense_mediated_decay - - - 59.0 2.0 0.45 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000022120 Obi1 ENSMUST00000227640 ENSMUSP00000154694 TRANSLATION protein_coding - - - 235.0 7.0 1.575 0.0 31.4 0.0 -3,-6 0.0351 2 18.0 MINOR ENSMUSG00000022120 Obi1 ENSMUST00000022716 ENSMUSP00000022716 TRANSLATION protein_coding - CCDS27320.1 3 722.0 7.0 1.575 11.5 31.4 0.0 -3,-6 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000022120 Obi1 ENSMUST00000228448 ENSMUSP00000154655 TRANSLATION protein_coding - - - 214.0 7.0 1.575 0.0 31.4 0.0 -3,-6 0.0351 2 18.0 MINOR ENSMUSG00000022032 Scara5 ENSMUST00000154373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022032 Scara5 ENSMUST00000069226 ENSMUSP00000063391 TRANSLATION protein_coding - CCDS49523.1 1 387.0 0.0 0.0 0.0 35.4 1.0 -4,-5 0.0296 8 0.0 MINOR ENSMUSG00000022032 Scara5 ENSMUST00000022610 ENSMUSP00000022610 TRANSLATION protein_coding - CCDS27214.1 1 491.0 3.0 2.0 19.5 143.2 1.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000022109 Med4 ENSMUST00000226256 - NO_TRANSLATION retained_intron ENSMUSG00000022109 Med4 ENSMUST00000022705 ENSMUSP00000022705 TRANSLATION protein_coding - CCDS49538.1 1 270.0 0.0 3.79 0.1 107.8 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000022109 Med4 ENSMUST00000228141 - NO_TRANSLATION retained_intron ENSMUSG00000021938 Pspc1 ENSMUST00000168575 ENSMUSP00000125780 TRANSLATION nonsense_mediated_decay start - 3 59.0 0.0 1.1 0.0 45.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021938 Pspc1 ENSMUST00000022507 ENSMUSP00000022507 TRANSLATION protein_coding - CCDS27151.1 1 523.0 0.0 6.15 11.0 208.6 0.0 -4,-2 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000021938 Pspc1 ENSMUST00000168524 - NO_TRANSLATION retained_intron ENSMUSG00000021938 Pspc1 ENSMUST00000163924 ENSMUSP00000133038 TRANSLATION protein_coding - - 1 466.0 0.0 6.15 0.1 208.6 0.0 -4,-2 0.1348 11 12.0 MINOR ENSMUSG00000076895 Traj34 ENSMUST00000103707 ENSMUSP00000143621 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000021791 Dydc2 ENSMUST00000022316 ENSMUSP00000022316 TRANSLATION protein_coding - CCDS26958.1 1 139.0 0.0 2.0 0.4 66.3 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000048279 Sacs ENSMUST00000121091 ENSMUSP00000113925 TRANSLATION protein_coding - - 1 745.0 10.0 5.0 0.0 0.0 0.0 -4,-1 0.0625 12 11.67 MINOR ENSMUSG00000048279 Sacs ENSMUST00000150222 - NO_TRANSLATION retained_intron ENSMUSG00000048279 Sacs ENSMUST00000119943 ENSMUSP00000113377 TRANSLATION protein_coding - - 5 4582.0 10.0 5.165 10.8 0.0 0.0 -4,-5 1.0 95 15.0 PRINCIPAL:1 ENSMUSG00000048279 Sacs ENSMUST00000119509 ENSMUSP00000113007 TRANSLATION protein_coding - - 5 744.0 10.0 5.165 0.0 0.0 0.0 -4,-5 0.0637 13 12.0 MINOR ENSMUSG00000048279 Sacs ENSMUST00000089394 ENSMUSP00000086816 TRANSLATION protein_coding - CCDS27180.1 1 768.0 10.0 5.165 0.0 0.0 0.0 -4,-5 0.1971 12 12.0 MINOR ENSMUSG00000048279 Sacs ENSMUST00000229692 ENSMUSP00000155783 TRANSLATION protein_coding start/stop - - 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0739 1 -2.0 MINOR ENSMUSG00000048279 Sacs ENSMUST00000227570 ENSMUSP00000154300 TRANSLATION nonsense_mediated_decay - - - 137.0 0.0 2.415 0.0 0.0 0.0 -4,-5 0.0156 1 -2.0 MINOR ENSMUSG00000022003 Slc25a30 ENSMUST00000228528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022003 Slc25a30 ENSMUST00000228379 - NO_TRANSLATION retained_intron ENSMUSG00000022003 Slc25a30 ENSMUST00000227621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022003 Slc25a30 ENSMUST00000226574 - NO_TRANSLATION retained_intron ENSMUSG00000022003 Slc25a30 ENSMUST00000022580 ENSMUSP00000022580 TRANSLATION protein_coding - CCDS27281.1 1 291.0 18.0 6.689 31.9 223.4 0.0 -4,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000022003 Slc25a30 ENSMUST00000227894 ENSMUSP00000153810 TRANSLATION protein_coding stop - - 90.0 0.0 2.33 0.0 67.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021910 Nisch ENSMUST00000170436 ENSMUSP00000131861 TRANSLATION nonsense_mediated_decay start - 3 45.0 0.0 0.32 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021910 Nisch ENSMUST00000170253 ENSMUSP00000129547 TRANSLATION protein_coding start - 2 149.0 0.0 3.298 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021910 Nisch ENSMUST00000165981 ENSMUSP00000130210 TRANSLATION protein_coding - - 1 472.0 0.0 9.36 0.0 100.1 0.0 -4,-5 0.0093 13 9.96 MINOR ENSMUSG00000021910 Nisch ENSMUST00000022469 ENSMUSP00000022469 TRANSLATION protein_coding - CCDS36853.1 2 1593.0 0.0 10.38 0.0 94.2 0.0 -4,-5 0.3489 26 11.646 MINOR ENSMUSG00000021910 Nisch ENSMUST00000164000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021910 Nisch ENSMUST00000164956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021910 Nisch ENSMUST00000169149 ENSMUSP00000131623 TRANSLATION nonsense_mediated_decay start - 3 58.0 0.0 0.95 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021910 Nisch ENSMUST00000172142 ENSMUSP00000132413 TRANSLATION protein_coding - CCDS84107.1 1 516.0 0.0 10.38 6.9 100.1 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000021910 Nisch ENSMUST00000163552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021910 Nisch ENSMUST00000170343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021910 Nisch ENSMUST00000167449 ENSMUSP00000126001 TRANSLATION protein_coding start - 2 166.0 0.0 0.0 0.0 0.0 0.0 -2,-6 0.0 4 -2.0 MINOR ENSMUSG00000021910 Nisch ENSMUST00000164989 ENSMUSP00000126982 TRANSLATION nonsense_mediated_decay - - 1 334.0 0.0 6.16 0.0 70.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021910 Nisch ENSMUST00000172370 - NO_TRANSLATION retained_intron ENSMUSG00000021910 Nisch ENSMUST00000168451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021910 Nisch ENSMUST00000169628 ENSMUSP00000131465 TRANSLATION protein_coding start - 3 333.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 6 -2.0 MINOR ENSMUSG00000021910 Nisch ENSMUST00000171735 ENSMUSP00000127132 TRANSLATION protein_coding - - 1 153.0 0.0 3.3 0.0 70.3 0.0 -4,-5 0.0009 1 4.212 MINOR ENSMUSG00000021910 Nisch ENSMUST00000164617 - NO_TRANSLATION retained_intron ENSMUSG00000021910 Nisch ENSMUST00000167602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021910 Nisch ENSMUST00000167223 - NO_TRANSLATION retained_intron ENSMUSG00000021910 Nisch ENSMUST00000167979 - NO_TRANSLATION retained_intron ENSMUSG00000021910 Nisch ENSMUST00000163846 - NO_TRANSLATION retained_intron ENSMUSG00000021910 Nisch ENSMUST00000168206 ENSMUSP00000132842 TRANSLATION protein_coding - - 1 1348.0 0.0 5.385 0.0 29.8 0.0 -4,-5 0.0411 21 1.782 MINOR ENSMUSG00000021910 Nisch ENSMUST00000169906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022025 Cnmd ENSMUST00000172331 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022025 Cnmd ENSMUST00000167524 - NO_TRANSLATION retained_intron ENSMUSG00000022025 Cnmd ENSMUST00000165835 ENSMUSP00000126958 TRANSLATION protein_coding - CCDS79348.1 1 338.0 0.0 0.0 9.2 68.8 1.0 -4,-5 0.9096 2 4.196 ALTERNATIVE:1 ENSMUSG00000022025 Cnmd ENSMUST00000022603 ENSMUSP00000022603 TRANSLATION protein_coding - CCDS27302.1 1 334.0 0.0 0.0 12.2 68.8 1.0 -4,-5 1.0 2 5.0 PRINCIPAL:4 ENSMUSG00000022025 Cnmd ENSMUST00000165204 - NO_TRANSLATION retained_intron ENSMUSG00000044447 Dock5 ENSMUST00000224823 - NO_TRANSLATION retained_intron ENSMUSG00000044447 Dock5 ENSMUST00000226033 - NO_TRANSLATION retained_intron ENSMUSG00000044447 Dock5 ENSMUST00000039135 ENSMUSP00000036674 TRANSLATION protein_coding - CCDS36963.1 1 1868.0 0.0 24.114 11.1 918.3 0.0 -4,-7 1.0 36 15.0 PRINCIPAL:1 ENSMUSG00000053093 Myh7 ENSMUST00000227401 - NO_TRANSLATION retained_intron ENSMUSG00000053093 Myh7 ENSMUST00000227518 ENSMUSP00000154332 TRANSLATION protein_coding stop - - 87.0 0.0 2.83 0.0 59.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053093 Myh7 ENSMUST00000168485 ENSMUSP00000126840 TRANSLATION protein_coding - CCDS27106.1 1 1935.0 16.0 37.54 30.7 1593.3 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000053093 Myh7 ENSMUST00000226424 ENSMUSP00000154631 TRANSLATION protein_coding stop - - 36.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000053093 Myh7 ENSMUST00000228837 ENSMUSP00000154569 TRANSLATION protein_coding stop - - 94.0 0.0 3.16 0.0 59.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053093 Myh7 ENSMUST00000149852 - NO_TRANSLATION retained_intron ENSMUSG00000053093 Myh7 ENSMUST00000153783 ENSMUSP00000116595 TRANSLATION protein_coding stop - 2 60.0 0.0 1.75 0.0 39.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053093 Myh7 ENSMUST00000102803 ENSMUSP00000099867 TRANSLATION protein_coding - CCDS27106.1 1 1935.0 16.0 37.54 30.7 1593.3 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000034623 Prss55 ENSMUST00000089338 ENSMUSP00000086752 TRANSLATION protein_coding - CCDS36952.1 1 321.0 6.0 2.22 0.4 203.9 0.0 1,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000034623 Prss55 ENSMUST00000169113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034623 Prss55 ENSMUST00000171503 ENSMUSP00000128485 TRANSLATION protein_coding - - 1 225.0 3.0 1.72 0.0 139.4 0.0 1,-2 0.0018 1 9.78 MINOR ENSMUSG00000076822 Trav16n ENSMUST00000103633 ENSMUSP00000100410 TRANSLATION TR_V_gene stop - - 117.0 0.0 1.3 0.0 60.6 0.0 2,-1 0.8251 - -2.0 PRINCIPAL:5 ENSMUSG00000076822 Trav16n ENSMUST00000199280 ENSMUSP00000143456 TRANSLATION TR_V_gene stop - - 116.0 0.0 1.3 0.0 60.6 0.0 2,-1 0.3443 - -2.0 ALTERNATIVE:2 ENSMUSG00000095088 Trav11d ENSMUST00000103648 ENSMUSP00000100425 TRANSLATION TR_V_gene stop - - 114.0 3.0 1.25 0.0 49.3 0.0 4,-1 0.8302 - -2.0 PRINCIPAL:1 ENSMUSG00000016831 Tox4 ENSMUST00000173361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016831 Tox4 ENSMUST00000137753 - NO_TRANSLATION retained_intron ENSMUSG00000016831 Tox4 ENSMUST00000172655 - NO_TRANSLATION retained_intron ENSMUSG00000016831 Tox4 ENSMUST00000022766 ENSMUSP00000022766 TRANSLATION protein_coding - CCDS36920.1 5 619.0 0.0 1.75 10.3 64.5 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000016831 Tox4 ENSMUST00000152493 - NO_TRANSLATION retained_intron ENSMUSG00000021919 Chat ENSMUST00000227675 - NO_TRANSLATION retained_intron ENSMUSG00000021919 Chat ENSMUST00000226365 ENSMUSP00000153721 TRANSLATION protein_coding stop - - 219.0 4.0 4.875 0.0 196.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021919 Chat ENSMUST00000226351 ENSMUSP00000153857 TRANSLATION protein_coding stop - - 36.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021919 Chat ENSMUST00000228256 ENSMUSP00000154480 TRANSLATION protein_coding stop - - 36.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021919 Chat ENSMUST00000228420 ENSMUSP00000153964 TRANSLATION protein_coding stop - - 36.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021919 Chat ENSMUST00000228511 ENSMUSP00000153837 TRANSLATION protein_coding stop - - 36.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021919 Chat ENSMUST00000227579 ENSMUSP00000153738 TRANSLATION protein_coding stop - - 219.0 4.0 4.875 0.0 196.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000021919 Chat ENSMUST00000070125 ENSMUSP00000070865 TRANSLATION protein_coding - CCDS26920.1 1 645.0 28.0 13.625 0.0 652.7 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000035121 Neil2 ENSMUST00000225157 ENSMUSP00000153633 TRANSLATION protein_coding stop - - 132.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0008 2 -2.0 MINOR ENSMUSG00000035121 Neil2 ENSMUST00000226002 ENSMUSP00000152963 TRANSLATION protein_coding stop - - 306.0 1.0 3.4 0.0 0.0 0.0 -4,-7 0.019 4 -2.0 MINOR ENSMUSG00000035121 Neil2 ENSMUST00000038229 ENSMUSP00000045200 TRANSLATION protein_coding - CCDS36949.1 1 329.0 7.0 4.2 2.1 0.0 0.0 -4,-7 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000035121 Neil2 ENSMUST00000225841 ENSMUSP00000153441 TRANSLATION nonsense_mediated_decay - - - 277.0 1.0 3.4 0.0 0.0 0.0 -4,-7 0.0134 4 -2.0 MINOR ENSMUSG00000035121 Neil2 ENSMUST00000223723 - NO_TRANSLATION retained_intron ENSMUSG00000093939 Trav4d-3 ENSMUST00000103592 ENSMUSP00000100369 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.3 0.0 46.7 0.0 1,-2 0.8235 - -2.0 PRINCIPAL:1 ENSMUSG00000019297 Nop9 ENSMUST00000019441 ENSMUSP00000019441 TRANSLATION protein_coding - CCDS27126.1 1 636.0 0.0 2.615 8.4 0.0 0.0 -4,-2 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000019297 Nop9 ENSMUST00000227300 - NO_TRANSLATION retained_intron ENSMUSG00000076917 Traj12 ENSMUST00000103729 ENSMUSP00000142357 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000076901 Traj28 ENSMUST00000103713 ENSMUSP00000143330 TRANSLATION TR_J_gene start/stop - - 22.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5648 - -2.0 PRINCIPAL:1 ENSMUSG00000021922 Itih4 ENSMUST00000078490 ENSMUSP00000077580 TRANSLATION protein_coding - CCDS49433.1 1 941.0 4.0 9.52 0.0 242.6 0.0 3,-1 0.9956 26 12.0 ALTERNATIVE:2 ENSMUSG00000021922 Itih4 ENSMUST00000120269 ENSMUSP00000112798 TRANSLATION protein_coding - CCDS26901.1 1 942.0 4.0 9.52 0.0 242.6 0.0 3,-1 1.0 26 12.0 PRINCIPAL:4 ENSMUSG00000021922 Itih4 ENSMUST00000168782 ENSMUSP00000125920 TRANSLATION protein_coding - CCDS70558.1 1 925.0 4.0 9.52 0.0 242.6 0.0 3,-1 0.6373 25 12.0 ALTERNATIVE:2 ENSMUSG00000021922 Itih4 ENSMUST00000006703 ENSMUSP00000006703 TRANSLATION protein_coding - CCDS79286.1 1 902.0 4.0 9.52 0.0 242.6 0.0 3,-1 0.5327 25 12.0 ALTERNATIVE:2 ENSMUSG00000021922 Itih4 ENSMUST00000227899 - NO_TRANSLATION retained_intron ENSMUSG00000021967 Mrpl57 ENSMUST00000022538 ENSMUSP00000022538 TRANSLATION protein_coding - CCDS27161.1 1 102.0 0.0 1.0 36.9 130.0 0.0 -4,0 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000021967 Mrpl57 ENSMUST00000224313 - NO_TRANSLATION retained_intron ENSMUSG00000076904 Traj25 ENSMUST00000103716 ENSMUSP00000143257 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000022026 Olfm4 ENSMUST00000088735 ENSMUSP00000086112 TRANSLATION protein_coding - CCDS36989.1 2 538.0 0.0 0.9 0.0 248.4 0.0 2,-3 0.3642 6 9.27 MINOR ENSMUSG00000022026 Olfm4 ENSMUST00000228749 ENSMUSP00000154285 TRANSLATION protein_coding - - - 505.0 0.0 1.65 0.9 248.4 0.0 2,-3 0.8793 6 12.0 PRINCIPAL:1 ENSMUSG00000022026 Olfm4 ENSMUST00000226541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021872 Rnase10 ENSMUST00000022424 ENSMUSP00000022424 TRANSLATION protein_coding - CCDS27030.1 1 245.0 0.0 0.8 0.1 66.9 0.0 -4,-6 0.2968 2 6.0 ALTERNATIVE:2 ENSMUSG00000021872 Rnase10 ENSMUST00000164632 ENSMUSP00000131065 TRANSLATION protein_coding - CCDS49480.1 1 208.0 0.0 0.8 1.0 66.9 0.0 2,-3 1.0 2 6.0 PRINCIPAL:2 ENSMUSG00000095533 Gm10413 ENSMUST00000112728 ENSMUSP00000108348 TRANSLATION protein_coding start - 1 225.0 0.0 3.0 0.0 76.2 0.0 -1,-4 0.7649 - -2.0 PRINCIPAL:1 ENSMUSG00000041408 Wapl ENSMUST00000151285 ENSMUSP00000117282 TRANSLATION protein_coding start - 5 430.0 0.0 8.21 0.0 257.8 0.0 -4,-6 0.0 12 -2.0 MINOR ENSMUSG00000041408 Wapl ENSMUST00000169910 ENSMUSP00000130547 TRANSLATION protein_coding - CCDS36880.1 1 1200.0 0.0 9.71 9.0 396.4 0.0 -4,-6 1.0 25 9.0 PRINCIPAL:4 ENSMUSG00000041408 Wapl ENSMUST00000172658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041408 Wapl ENSMUST00000111895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041408 Wapl ENSMUST00000048263 ENSMUSP00000040232 TRANSLATION protein_coding - CCDS36880.1 1 1200.0 0.0 9.71 9.0 396.4 0.0 -4,-6 1.0 25 9.0 PRINCIPAL:4 ENSMUSG00000041408 Wapl ENSMUST00000090027 ENSMUSP00000087481 TRANSLATION protein_coding - CCDS79296.1 5 1194.0 0.0 9.71 8.0 396.4 0.0 -4,-6 0.9149 25 8.625 ALTERNATIVE:1 ENSMUSG00000041408 Wapl ENSMUST00000174559 ENSMUSP00000133779 TRANSLATION protein_coding start/stop - 5 160.0 0.0 0.5 0.0 56.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021850 ccdc198 ENSMUST00000228936 ENSMUSP00000154726 TRANSLATION protein_coding - CCDS26996.1 - 294.0 0.0 1.8 8.7 498.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021850 ccdc198 ENSMUST00000022398 ENSMUSP00000022398 TRANSLATION protein_coding - - 1 303.0 0.0 1.8 0.0 492.9 0.0 -4,-2 0.1048 - 11.688 MINOR ENSMUSG00000021850 ccdc198 ENSMUST00000227113 ENSMUSP00000153946 TRANSLATION protein_coding stop - - 251.0 0.0 1.8 0.0 353.2 0.0 -4,-7 0.0205 - -2.0 MINOR ENSMUSG00000021850 ccdc198 ENSMUST00000130853 ENSMUSP00000117775 TRANSLATION protein_coding stop - 5 216.0 0.0 1.8 0.0 349.4 0.0 -4,-7 0.0214 - -2.0 MINOR ENSMUSG00000021850 ccdc198 ENSMUST00000148109 ENSMUSP00000114834 TRANSLATION nonsense_mediated_decay - - 3 65.0 0.0 0.0 0.0 93.9 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000022215 Fitm1 ENSMUST00000022826 ENSMUSP00000022826 TRANSLATION protein_coding - CCDS27116.1 1 292.0 0.0 0.6 10.3 0.0 0.0 -2,-3 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000034194 R3hcc1 ENSMUST00000128747 - NO_TRANSLATION retained_intron ENSMUSG00000034194 R3hcc1 ENSMUST00000138326 - NO_TRANSLATION retained_intron ENSMUSG00000034194 R3hcc1 ENSMUST00000118374 ENSMUSP00000113450 TRANSLATION protein_coding - CCDS49533.2 1 488.0 0.0 2.65 0.0 56.6 0.0 -3,-6 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000034194 R3hcc1 ENSMUST00000121142 ENSMUSP00000113898 TRANSLATION protein_coding - CCDS49533.2 1 488.0 0.0 2.65 0.0 56.6 0.0 -3,-6 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000034194 R3hcc1 ENSMUST00000147609 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022211 Carmil3 ENSMUST00000227312 - NO_TRANSLATION retained_intron ENSMUSG00000022211 Carmil3 ENSMUST00000228877 ENSMUSP00000153889 TRANSLATION nonsense_mediated_decay - - - 121.0 0.0 1.95 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000022211 Carmil3 ENSMUST00000227088 - NO_TRANSLATION retained_intron ENSMUSG00000022211 Carmil3 ENSMUST00000228760 - NO_TRANSLATION retained_intron ENSMUSG00000022211 Carmil3 ENSMUST00000226653 - NO_TRANSLATION retained_intron ENSMUSG00000022211 Carmil3 ENSMUST00000226446 ENSMUSP00000154051 TRANSLATION nonsense_mediated_decay start - - 145.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022211 Carmil3 ENSMUST00000228497 - NO_TRANSLATION retained_intron ENSMUSG00000022211 Carmil3 ENSMUST00000226757 ENSMUSP00000154517 TRANSLATION nonsense_mediated_decay - - - 235.0 0.0 2.74 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000022211 Carmil3 ENSMUST00000227563 - NO_TRANSLATION retained_intron ENSMUSG00000022211 Carmil3 ENSMUST00000226388 - NO_TRANSLATION retained_intron ENSMUSG00000022211 Carmil3 ENSMUST00000227070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022211 Carmil3 ENSMUST00000076236 ENSMUSP00000075587 TRANSLATION protein_coding - CCDS36930.1 2 1375.0 0.0 15.358 7.8 274.6 0.0 -4,-6 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000022130 Tgds ENSMUST00000227350 ENSMUSP00000153859 TRANSLATION nonsense_mediated_decay - - - 95.0 15.0 2.475 0.0 27.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022130 Tgds ENSMUST00000228085 - NO_TRANSLATION retained_intron ENSMUSG00000022130 Tgds ENSMUST00000022727 ENSMUSP00000022727 TRANSLATION protein_coding - CCDS27332.1 1 355.0 46.0 10.35 9.0 250.7 0.0 -4,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000022130 Tgds ENSMUST00000228543 ENSMUSP00000154426 TRANSLATION protein_coding - - - 343.0 46.0 9.9 0.0 250.7 0.0 -4,-2 0.0756 - 17.1 MINOR ENSMUSG00000021809 Nudt13 ENSMUST00000224066 ENSMUSP00000153582 TRANSLATION protein_coding stop - - 137.0 1.0 2.03 0.0 25.8 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000021809 Nudt13 ENSMUST00000223566 - NO_TRANSLATION retained_intron ENSMUSG00000021809 Nudt13 ENSMUST00000224169 ENSMUSP00000153164 TRANSLATION nonsense_mediated_decay - - - 146.0 0.0 1.73 0.0 34.5 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000021809 Nudt13 ENSMUST00000223663 ENSMUSP00000153558 TRANSLATION protein_coding - CCDS36815.1 - 352.0 5.0 5.58 0.0 159.3 0.0 -4,0 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000021809 Nudt13 ENSMUST00000223941 ENSMUSP00000153437 TRANSLATION protein_coding stop - - 197.0 2.0 3.38 0.0 102.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000021809 Nudt13 ENSMUST00000225728 - NO_TRANSLATION retained_intron ENSMUSG00000021809 Nudt13 ENSMUST00000225354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021809 Nudt13 ENSMUST00000225722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021809 Nudt13 ENSMUST00000224354 - NO_TRANSLATION retained_intron ENSMUSG00000021809 Nudt13 ENSMUST00000225314 ENSMUSP00000153266 TRANSLATION nonsense_mediated_decay - - - 146.0 0.0 1.73 0.0 34.5 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000021809 Nudt13 ENSMUST00000225442 - NO_TRANSLATION retained_intron ENSMUSG00000021809 Nudt13 ENSMUST00000022343 ENSMUSP00000022343 TRANSLATION protein_coding - CCDS36815.1 1 352.0 5.0 5.58 0.0 159.3 0.0 -4,0 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000021809 Nudt13 ENSMUST00000225440 - NO_TRANSLATION retained_intron ENSMUSG00000021809 Nudt13 ENSMUST00000224377 - NO_TRANSLATION retained_intron ENSMUSG00000021809 Nudt13 ENSMUST00000224311 ENSMUSP00000153615 TRANSLATION protein_coding - - - 322.0 3.0 4.83 0.0 121.5 0.0 -4,0 0.003 4 11.232 MINOR ENSMUSG00000021809 Nudt13 ENSMUST00000224674 - NO_TRANSLATION retained_intron ENSMUSG00000022009 Nufip1 ENSMUST00000022586 ENSMUSP00000022586 TRANSLATION protein_coding - CCDS27284.1 1 484.0 8.0 1.0 0.1 96.9 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000022015 Tnfsf11 ENSMUST00000022592 ENSMUSP00000022592 TRANSLATION protein_coding - CCDS27294.1 1 316.0 0.0 2.0 12.3 122.5 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000000957 Mmp14 ENSMUST00000197874 ENSMUSP00000142665 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0019 - -2.0 MINOR ENSMUSG00000000957 Mmp14 ENSMUST00000226710 - NO_TRANSLATION retained_intron ENSMUSG00000000957 Mmp14 ENSMUST00000197947 - NO_TRANSLATION retained_intron ENSMUSG00000000957 Mmp14 ENSMUST00000089688 ENSMUSP00000087119 TRANSLATION protein_coding - CCDS36922.1 1 582.0 22.0 8.264 8.0 519.8 0.0 1,-2 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000000957 Mmp14 ENSMUST00000225641 ENSMUSP00000153679 TRANSLATION protein_coding - - - 558.0 22.0 7.664 0.0 390.4 0.0 1,-2 0.0297 13 10.8 MINOR ENSMUSG00000000957 Mmp14 ENSMUST00000196155 ENSMUSP00000143012 TRANSLATION protein_coding stop - 3 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000000957 Mmp14 ENSMUST00000198679 - NO_TRANSLATION retained_intron ENSMUSG00000025280 Polr3a ENSMUST00000223718 ENSMUSP00000153243 TRANSLATION nonsense_mediated_decay - - - 649.0 13.0 13.25 0.0 656.3 0.0 -4,-5 0.0157 10 -2.0 MINOR ENSMUSG00000025280 Polr3a ENSMUST00000225014 - NO_TRANSLATION retained_intron ENSMUSG00000025280 Polr3a ENSMUST00000223848 - NO_TRANSLATION retained_intron ENSMUSG00000025280 Polr3a ENSMUST00000225526 - NO_TRANSLATION retained_intron ENSMUSG00000025280 Polr3a ENSMUST00000026322 ENSMUSP00000026322 TRANSLATION protein_coding - CCDS36828.1 1 1390.0 13.0 30.08 31.6 1127.1 0.0 -4,-5 1.0 31 22.0 PRINCIPAL:1 ENSMUSG00000000959 Oxa1l ENSMUST00000198107 - NO_TRANSLATION retained_intron ENSMUSG00000000959 Oxa1l ENSMUST00000228719 ENSMUSP00000153955 TRANSLATION protein_coding start - - 121.0 0.0 1.15 0.0 0.0 1.0 -4,-5 0.0068 1 -2.0 MINOR ENSMUSG00000000959 Oxa1l ENSMUST00000196882 - NO_TRANSLATION retained_intron ENSMUSG00000000959 Oxa1l ENSMUST00000000985 ENSMUSP00000000985 TRANSLATION protein_coding - CCDS27086.1 1 433.0 0.0 2.39 6.5 0.0 4.0 -2,2 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000000959 Oxa1l ENSMUST00000228567 - NO_TRANSLATION retained_intron ENSMUSG00000022002 Erich6b ENSMUST00000022579 ENSMUSP00000022579 TRANSLATION protein_coding - CCDS56969.1 1 220.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.055 - 0.0 MINOR ENSMUSG00000022002 Erich6b ENSMUST00000238633 ENSMUSP00000158673 TRANSLATION protein_coding - - - 574.0 0.0 2.375 0.0 188.8 0.0 -4,-5 0.771 - 12.0 PRINCIPAL:1 ENSMUSG00000076862 Trav19 ENSMUST00000103674 ENSMUSP00000100451 TRANSLATION TR_V_gene stop - - 119.0 0.0 1.25 0.0 63.3 0.0 1,-2 0.8245 - -2.0 PRINCIPAL:1 ENSMUSG00000072707 Or2t1 ENSMUST00000206009 ENSMUSP00000146305 TRANSLATION protein_coding - CCDS26826.1 2 317.0 0.0 1.0 10.2 166.8 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000072707 Or2t1 ENSMUST00000217035 ENSMUSP00000149019 TRANSLATION protein_coding - CCDS26826.1 5 317.0 0.0 1.0 10.2 166.8 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021975 Ints9 ENSMUST00000239450 ENSMUSP00000159373 TRANSLATION protein_coding - CCDS27210.1 - 687.0 0.0 14.8 0.0 28.2 0.0 -4,-5 0.1624 15 12.0 MINOR ENSMUSG00000021975 Ints9 ENSMUST00000224593 - NO_TRANSLATION retained_intron ENSMUSG00000021975 Ints9 ENSMUST00000043914 ENSMUSP00000045552 TRANSLATION protein_coding - - 1 658.0 0.0 14.8 36.9 28.2 0.0 -4,-6 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000021975 Ints9 ENSMUST00000225790 - NO_TRANSLATION retained_intron ENSMUSG00000104620 Trav7-1 ENSMUST00000198019 ENSMUSP00000142920 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.5 0.0 71.8 0.0 4,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000046168 Kcnrg ENSMUST00000051184 ENSMUSP00000055327 TRANSLATION protein_coding - CCDS27187.1 1 264.0 0.0 0.4 6.8 63.9 0.0 -4,-7 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000046168 Kcnrg ENSMUST00000225582 ENSMUSP00000153429 TRANSLATION protein_coding - - - 191.0 0.0 0.4 0.7 63.9 0.0 -4,-7 0.1969 - 12.0 MINOR ENSMUSG00000095528 Gm10375 ENSMUST00000163970 ENSMUSP00000159544 TRANSLATION protein_coding - CCDS49460.1 1 169.0 0.0 3.33 0.0 63.1 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022094 Slc39a14 ENSMUST00000139284 ENSMUSP00000122615 TRANSLATION protein_coding stop - 2 64.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.002 - -2.0 MINOR ENSMUSG00000022094 Slc39a14 ENSMUST00000068044 ENSMUSP00000066108 TRANSLATION protein_coding - CCDS36969.1 5 489.0 0.0 2.6 8.4 230.7 4.0 1,-2 1.0 3 9.0 PRINCIPAL:4 ENSMUSG00000022094 Slc39a14 ENSMUST00000143153 ENSMUSP00000122816 TRANSLATION protein_coding stop - 5 48.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.002 - -2.0 MINOR ENSMUSG00000022094 Slc39a14 ENSMUST00000152202 - NO_TRANSLATION retained_intron ENSMUSG00000022094 Slc39a14 ENSMUST00000022688 ENSMUSP00000022688 TRANSLATION protein_coding - CCDS49536.1 1 489.0 0.0 2.6 8.4 225.9 4.0 1,-2 0.971 3 9.0 ALTERNATIVE:1 ENSMUSG00000022094 Slc39a14 ENSMUST00000142598 - NO_TRANSLATION retained_intron ENSMUSG00000022094 Slc39a14 ENSMUST00000155825 - NO_TRANSLATION retained_intron ENSMUSG00000022094 Slc39a14 ENSMUST00000145040 - NO_TRANSLATION retained_intron ENSMUSG00000022094 Slc39a14 ENSMUST00000146453 - NO_TRANSLATION retained_intron ENSMUSG00000022094 Slc39a14 ENSMUST00000152067 ENSMUSP00000119040 TRANSLATION protein_coding - CCDS49536.1 1 489.0 0.0 2.6 8.4 225.9 4.0 1,-2 0.971 3 9.0 ALTERNATIVE:1 ENSMUSG00000022094 Slc39a14 ENSMUST00000151011 ENSMUSP00000118319 TRANSLATION protein_coding stop - 2 129.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.002 1 -2.0 MINOR ENSMUSG00000022094 Slc39a14 ENSMUST00000127000 ENSMUSP00000117792 TRANSLATION protein_coding stop - 5 109.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.002 1 -2.0 MINOR ENSMUSG00000022094 Slc39a14 ENSMUST00000152442 ENSMUSP00000117010 TRANSLATION protein_coding stop - 5 164.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0029 1 -2.0 MINOR ENSMUSG00000072601 Ear1 ENSMUST00000179200 ENSMUSP00000136385 TRANSLATION protein_coding - CCDS26964.1 1 155.0 5.0 1.0 0.0 111.9 0.0 4,-1 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000072601 Ear1 ENSMUST00000100691 ENSMUSP00000098256 TRANSLATION protein_coding - CCDS26964.1 1 155.0 5.0 1.0 0.0 111.9 0.0 4,-1 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000072726 Gm5797 ENSMUST00000100886 ENSMUSP00000098446 TRANSLATION protein_coding - CCDS49399.1 1 204.0 0.0 3.0 0.0 69.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091563 Gm8108 ENSMUST00000249549 ENSMUSP00000159790 TRANSLATION protein_coding - - - 205.0 0.0 3.0 0.0 75.2 0.0 -4,-5 0.7376 - 8.0 PRINCIPAL:2 ENSMUSG00000091563 Gm8108 ENSMUST00000249552 ENSMUSP00000159793 TRANSLATION protein_coding - - - 205.0 0.0 3.0 0.0 75.2 0.0 -4,-5 0.7376 - 8.0 PRINCIPAL:2 ENSMUSG00000091563 Gm8108 ENSMUST00000249550 ENSMUSP00000159791 TRANSLATION protein_coding - - - 150.0 0.0 3.0 0.0 69.2 0.0 -4,-5 0.0258 - 7.0 ALTERNATIVE:2 ENSMUSG00000091563 Gm8108 ENSMUST00000249551 ENSMUSP00000159792 TRANSLATION protein_coding - - - 205.0 0.0 3.0 0.0 75.2 0.0 -4,-5 0.7376 - 8.0 PRINCIPAL:2 ENSMUSG00000091563 Gm8108 ENSMUST00000170207 ENSMUSP00000132118 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 75.2 0.0 -4,-5 0.7376 - 8.0 PRINCIPAL:2 ENSMUSG00000079265 Gm8257 ENSMUST00000227585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079265 Gm8257 ENSMUST00000249586 ENSMUSP00000159800 TRANSLATION protein_coding - - - 272.0 0.0 3.2 0.0 84.9 1.0 -4,-5 0.7404 - 8.0 PRINCIPAL:2 ENSMUSG00000079265 Gm8257 ENSMUST00000169583 ENSMUSP00000128723 TRANSLATION protein_coding - - 5 264.0 0.0 3.2 0.0 84.9 1.0 -4,-7 0.1116 - 8.0 ALTERNATIVE:2 ENSMUSG00000079265 Gm8257 ENSMUST00000249587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079265 Gm8257 ENSMUST00000111860 ENSMUSP00000107491 TRANSLATION protein_coding - - 5 228.0 0.0 3.2 0.0 84.9 1.0 -4,-5 0.0387 - 8.0 ALTERNATIVE:2 ENSMUSG00000079265 Gm8257 ENSMUST00000179215 ENSMUSP00000136936 TRANSLATION protein_coding stop - 5 163.0 0.0 3.0 0.0 84.9 0.0 -4,-2 0.0204 - -2.0 MINOR ENSMUSG00000079265 Gm8257 ENSMUST00000249588 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063458 Lrmda ENSMUST00000075639 ENSMUSP00000075065 TRANSLATION protein_coding - CCDS49415.1 1 229.0 0.0 4.428 14.2 0.0 0.0 -4,-6 1.0 - 9.97 PRINCIPAL:1 ENSMUSG00000063458 Lrmda ENSMUST00000159107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063458 Lrmda ENSMUST00000226003 ENSMUSP00000153387 TRANSLATION protein_coding start - - 77.0 0.0 0.33 0.0 0.0 0.0 -4,-6 0.0044 - -2.0 MINOR ENSMUSG00000063458 Lrmda ENSMUST00000161249 ENSMUSP00000124221 TRANSLATION protein_coding stop - 3 112.0 0.0 2.278 0.0 0.0 0.0 -4,-6 0.0013 - -2.0 MINOR ENSMUSG00000063458 Lrmda ENSMUST00000162337 - NO_TRANSLATION retained_intron ENSMUSG00000063458 Lrmda ENSMUST00000159777 ENSMUSP00000125751 TRANSLATION protein_coding - - 3 180.0 0.0 4.443 0.0 0.0 0.0 -4,-6 0.0252 - 6.0 MINOR ENSMUSG00000063458 Lrmda ENSMUST00000162540 ENSMUSP00000124436 TRANSLATION protein_coding - - 1 191.0 0.0 4.278 0.0 0.0 0.0 -4,-6 0.0132 - 5.67 MINOR ENSMUSG00000042104 Uggt2 ENSMUST00000148648 - NO_TRANSLATION retained_intron ENSMUSG00000042104 Uggt2 ENSMUST00000156203 ENSMUSP00000121249 TRANSLATION protein_coding - CCDS37013.2 5 1504.0 5.0 12.123 0.0 1150.1 0.0 2,-2 1.0 19 17.0 PRINCIPAL:1 ENSMUSG00000042104 Uggt2 ENSMUST00000173391 ENSMUSP00000133772 TRANSLATION protein_coding start/stop - 5 216.0 3.0 3.5 0.0 53.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042104 Uggt2 ENSMUST00000131424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042104 Uggt2 ENSMUST00000153693 ENSMUSP00000123327 TRANSLATION nonsense_mediated_decay start - 3 106.0 0.0 0.805 0.0 126.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000042104 Uggt2 ENSMUST00000148022 - NO_TRANSLATION retained_intron ENSMUSG00000042104 Uggt2 ENSMUST00000138720 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042104 Uggt2 ENSMUST00000126023 - NO_TRANSLATION retained_intron ENSMUSG00000042104 Uggt2 ENSMUST00000138923 - NO_TRANSLATION retained_intron ENSMUSG00000042104 Uggt2 ENSMUST00000154130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042104 Uggt2 ENSMUST00000127153 ENSMUSP00000117738 TRANSLATION nonsense_mediated_decay start - 1 466.0 0.0 1.02 0.0 252.4 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000042104 Uggt2 ENSMUST00000173470 - NO_TRANSLATION retained_intron ENSMUSG00000042104 Uggt2 ENSMUST00000136924 - NO_TRANSLATION retained_intron ENSMUSG00000042104 Uggt2 ENSMUST00000123350 - NO_TRANSLATION retained_intron ENSMUSG00000071540 3425401B19Rik ENSMUST00000096038 ENSMUSP00000093741 TRANSLATION protein_coding - CCDS49437.1 1 1412.0 0.0 0.0 0.0 89.4 0.0 -4,-5 1.0 11 6.0 PRINCIPAL:1 ENSMUSG00000071540 3425401B19Rik ENSMUST00000226958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022043 Trim35 ENSMUST00000121006 ENSMUSP00000112877 TRANSLATION protein_coding start - 1 358.0 12.0 2.238 0.0 65.4 0.0 -4,-5 0.0008 6 -2.0 MINOR ENSMUSG00000022043 Trim35 ENSMUST00000022623 ENSMUSP00000022623 TRANSLATION protein_coding - CCDS27221.2 1 516.0 12.0 2.538 0.3 149.9 0.0 -4,-7 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000022043 Trim35 ENSMUST00000223737 - NO_TRANSLATION retained_intron ENSMUSG00000022160 Mettl3 ENSMUST00000156611 - NO_TRANSLATION retained_intron ENSMUSG00000022160 Mettl3 ENSMUST00000127797 - NO_TRANSLATION retained_intron ENSMUSG00000022160 Mettl3 ENSMUST00000174853 ENSMUSP00000133864 TRANSLATION protein_coding stop - 3 245.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000022160 Mettl3 ENSMUST00000197394 - NO_TRANSLATION retained_intron ENSMUSG00000022160 Mettl3 ENSMUST00000174351 ENSMUSP00000134732 TRANSLATION nonsense_mediated_decay start - 5 335.0 4.0 2.5 0.0 0.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000022160 Mettl3 ENSMUST00000145875 ENSMUSP00000133573 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022160 Mettl3 ENSMUST00000173138 ENSMUSP00000134018 TRANSLATION nonsense_mediated_decay - - 5 153.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000022160 Mettl3 ENSMUST00000130550 - NO_TRANSLATION retained_intron ENSMUSG00000022160 Mettl3 ENSMUST00000173546 - NO_TRANSLATION retained_intron ENSMUSG00000022160 Mettl3 ENSMUST00000122962 ENSMUSP00000133999 TRANSLATION nonsense_mediated_decay - - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022160 Mettl3 ENSMUST00000173896 ENSMUSP00000133506 TRANSLATION nonsense_mediated_decay - - 5 153.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000022160 Mettl3 ENSMUST00000147768 ENSMUSP00000134577 TRANSLATION nonsense_mediated_decay - - 1 245.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 7 -2.0 MINOR ENSMUSG00000022160 Mettl3 ENSMUST00000174360 ENSMUSP00000134578 TRANSLATION protein_coding start - 3 104.0 0.0 3.25 0.0 77.2 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000022160 Mettl3 ENSMUST00000022767 ENSMUSP00000022767 TRANSLATION protein_coding - CCDS27053.1 1 580.0 4.0 8.33 11.8 203.8 0.0 -4,-7 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000022160 Mettl3 ENSMUST00000173656 ENSMUSP00000133759 TRANSLATION protein_coding start - 3 73.0 0.0 1.75 0.0 51.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000075478 Slitrk1 ENSMUST00000100322 ENSMUSP00000097897 TRANSLATION protein_coding - CCDS27325.1 - 696.0 0.0 0.6 24.8 90.9 0.0 3,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000021943 Gdf10 ENSMUST00000168727 ENSMUSP00000128621 TRANSLATION protein_coding - CCDS26927.1 1 476.0 0.0 1.0 2.9 98.0 0.0 1,-4 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000021822 Plau ENSMUST00000022368 ENSMUSP00000022368 TRANSLATION protein_coding - CCDS26858.1 1 433.0 5.0 8.0 3.3 292.5 0.0 3,-2 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000021822 Plau ENSMUST00000224141 ENSMUSP00000153684 TRANSLATION nonsense_mediated_decay - - - 35.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0 - -2.0 MINOR ENSMUSG00000095917 Or11g7 ENSMUST00000214792 ENSMUSP00000148916 TRANSLATION protein_coding - CCDS27016.1 5 311.0 0.0 1.0 10.9 187.8 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095917 Or11g7 ENSMUST00000089838 ENSMUSP00000087276 TRANSLATION protein_coding - CCDS27016.1 - 311.0 0.0 1.0 10.9 187.8 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000021749 Fam3d ENSMUST00000022269 ENSMUSP00000022269 TRANSLATION protein_coding - CCDS36802.1 1 223.0 0.0 4.6 20.9 96.8 1.0 -1,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000021749 Fam3d ENSMUST00000224529 ENSMUSP00000153041 TRANSLATION protein_coding stop - - 30.0 0.0 0.0 0.0 0.0 1.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000021798 Ldb3 ENSMUST00000064098 ENSMUSP00000066784 TRANSLATION protein_coding - CCDS36878.1 1 679.0 24.0 5.39 3.1 288.8 0.0 -4,-6 0.5558 21 14.388 ALTERNATIVE:2 ENSMUSG00000021798 Ldb3 ENSMUST00000090040 ENSMUSP00000087494 TRANSLATION protein_coding - CCDS36879.1 1 684.0 24.0 5.39 3.1 291.9 0.0 -4,-6 0.6242 21 14.388 ALTERNATIVE:2 ENSMUSG00000021798 Ldb3 ENSMUST00000228044 ENSMUSP00000154758 TRANSLATION protein_coding - - - 622.0 24.0 5.39 2.9 291.9 0.0 -4,-6 0.4615 21 14.352 ALTERNATIVE:2 ENSMUSG00000021798 Ldb3 ENSMUST00000226226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021798 Ldb3 ENSMUST00000227819 ENSMUSP00000154119 TRANSLATION protein_coding - - - 288.0 0.0 3.5 22.7 151.6 0.0 -4,-6 1.0 13 6.62 MINOR ENSMUSG00000021798 Ldb3 ENSMUST00000022327 ENSMUSP00000022327 TRANSLATION protein_coding - CCDS26941.1 1 723.0 24.0 5.39 3.1 274.4 0.0 -4,-6 0.4112 24 14.388 ALTERNATIVE:2 ENSMUSG00000021798 Ldb3 ENSMUST00000022330 ENSMUSP00000022330 TRANSLATION protein_coding - CCDS26942.1 1 327.0 0.0 3.5 4.1 134.1 0.0 -4,-6 0.1333 16 3.192 MINOR ENSMUSG00000021798 Ldb3 ENSMUST00000022328 ENSMUSP00000022328 TRANSLATION protein_coding - CCDS26940.1 1 661.0 24.0 5.39 4.1 274.4 0.0 -4,-6 0.7729 24 14.572 PRINCIPAL:3 ENSMUSG00000048281 Dleu7 ENSMUST00000063169 ENSMUSP00000060855 TRANSLATION protein_coding - CCDS27188.1 1 209.0 0.0 0.0 1.1 325.5 0.0 -4,-7 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000048281 Dleu7 ENSMUST00000225120 ENSMUSP00000153153 TRANSLATION nonsense_mediated_decay - - - 167.0 0.0 0.0 0.0 188.6 0.0 -4,-7 0.0007 1 -2.0 MINOR ENSMUSG00000079244 Gm5622 ENSMUST00000096170 ENSMUSP00000093884 TRANSLATION protein_coding - CCDS49483.1 1 167.0 0.0 2.0 0.0 55.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000076876 Traj57 ENSMUST00000196977 ENSMUSP00000143782 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000076876 Traj57 ENSMUST00000103688 - NO_TRANSLATION processed_transcript ENSMUSG00000022013 Dnajc15 ENSMUST00000226459 ENSMUSP00000154390 TRANSLATION protein_coding - CCDS27292.1 - 149.0 0.0 2.814 14.3 0.0 0.0 -4,-6 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000022013 Dnajc15 ENSMUST00000022590 ENSMUSP00000022590 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0147 1 -2.0 MINOR ENSMUSG00000022013 Dnajc15 ENSMUST00000227249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059887 Or4e5 ENSMUST00000206062 ENSMUSP00000146152 TRANSLATION protein_coding - CCDS27062.1 2 313.0 0.0 3.93 11.5 161.2 10.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059887 Or4e5 ENSMUST00000206931 ENSMUSP00000145728 TRANSLATION protein_coding stop - 2 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059887 Or4e5 ENSMUST00000073571 ENSMUSP00000073260 TRANSLATION protein_coding - CCDS27062.1 - 313.0 0.0 3.93 11.5 161.2 10.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059887 Or4e5 ENSMUST00000206069 ENSMUSP00000145718 TRANSLATION protein_coding stop - 2 78.0 0.0 1.33 0.0 52.9 4.0 -4,-7 0.0021 - -2.0 MINOR ENSMUSG00000059887 Or4e5 ENSMUST00000205963 ENSMUSP00000145923 TRANSLATION protein_coding stop - 2 127.0 0.0 2.0 0.0 99.2 6.0 -1,-5 0.0021 - -2.0 MINOR ENSMUSG00000037798 Mat1a ENSMUST00000047286 ENSMUSP00000044288 TRANSLATION protein_coding - CCDS26959.1 1 396.0 9.0 8.75 36.9 530.3 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000037798 Mat1a ENSMUST00000224514 ENSMUSP00000152905 TRANSLATION protein_coding stop - - 186.0 4.0 4.75 0.0 235.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000037798 Mat1a ENSMUST00000225720 ENSMUSP00000153488 TRANSLATION protein_coding - CCDS26959.1 - 396.0 9.0 8.75 36.9 530.3 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000021790 Dydc1 ENSMUST00000189865 ENSMUSP00000139412 TRANSLATION protein_coding - CCDS49451.1 1 175.0 0.0 3.6 0.0 68.8 0.0 -4,-6 0.3802 1 12.0 MINOR ENSMUSG00000021790 Dydc1 ENSMUST00000022315 ENSMUSP00000022315 TRANSLATION nonsense_mediated_decay - CCDS49451.1 1 175.0 0.0 3.6 0.0 68.8 0.0 -4,-6 0.3802 1 -2.0 MINOR ENSMUSG00000021790 Dydc1 ENSMUST00000161837 ENSMUSP00000124785 TRANSLATION protein_coding - - 5 177.0 0.0 3.6 6.2 68.8 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000095387 Trav6d-4 ENSMUST00000180717 ENSMUSP00000137863 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.1 0.0 39.7 0.0 4,-1 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000055421 Pcdh9 ENSMUST00000194056 ENSMUSP00000141602 TRANSLATION protein_coding stop - 2 873.0 57.0 1.2 0.0 460.6 1.0 0,-3 0.1117 13 -2.0 MINOR ENSMUSG00000055421 Pcdh9 ENSMUST00000192221 ENSMUSP00000142260 TRANSLATION protein_coding - CCDS79352.1 1 1038.0 55.0 1.0 0.0 599.2 1.0 -4,-5 0.1353 13 13.584 MINOR ENSMUSG00000055421 Pcdh9 ENSMUST00000193901 ENSMUSP00000141759 TRANSLATION protein_coding - CCDS79350.1 1 1203.0 57.0 1.2 21.3 633.9 1.0 0,-3 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000055421 Pcdh9 ENSMUST00000194129 ENSMUSP00000141205 TRANSLATION protein_coding start - 5 85.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000055421 Pcdh9 ENSMUST00000192817 - NO_TRANSLATION retained_intron ENSMUSG00000055421 Pcdh9 ENSMUST00000195376 ENSMUSP00000142224 TRANSLATION protein_coding - CCDS84156.1 5 1195.0 57.0 1.2 8.4 633.9 1.0 0,-3 0.7217 16 19.46 MINOR ENSMUSG00000055421 Pcdh9 ENSMUST00000195826 ENSMUSP00000141396 TRANSLATION protein_coding - CCDS36992.1 5 1237.0 57.0 1.2 10.3 633.2 1.0 0,-3 0.8481 16 19.79 MINOR ENSMUSG00000055421 Pcdh9 ENSMUST00000068992 ENSMUSP00000070935 TRANSLATION protein_coding - CCDS36992.1 1 1237.0 57.0 1.2 10.3 633.2 1.0 0,-3 0.8481 16 19.79 MINOR ENSMUSG00000095711 Trav14-2 ENSMUST00000184874 ENSMUSP00000139225 TRANSLATION TR_V_gene start/stop - - 92.0 0.0 1.0 0.0 66.2 0.0 -4,-5 0.0227 - -2.0 ALTERNATIVE:2 ENSMUSG00000095711 Trav14-2 ENSMUST00000179267 ENSMUSP00000136351 TRANSLATION TR_V_gene stop - - 121.0 0.0 1.43 0.0 66.2 0.0 3,-1 0.8217 - -2.0 PRINCIPAL:5 ENSMUSG00000095295 Gm3488 ENSMUST00000181562 ENSMUSP00000137698 TRANSLATION protein_coding - - 5 227.0 0.0 3.0 0.0 74.2 0.0 -4,-5 0.7384 - 8.0 PRINCIPAL:2 ENSMUSG00000095295 Gm3488 ENSMUST00000249433 ENSMUSP00000159759 TRANSLATION protein_coding - - - 172.0 0.0 3.0 0.0 68.1 0.0 -4,-5 0.0243 - 7.0 ALTERNATIVE:2 ENSMUSG00000095295 Gm3488 ENSMUST00000249432 ENSMUSP00000159758 TRANSLATION protein_coding - - - 172.0 0.0 3.0 0.0 68.1 0.0 -4,-5 0.0243 - 7.0 ALTERNATIVE:2 ENSMUSG00000063895 Nup58 ENSMUST00000225805 ENSMUSP00000153642 TRANSLATION nonsense_mediated_decay,RT - - - 532.0 0.0 4.85 0.0 868.7 0.0 -4,-7 0.852 - -2.0 PRINCIPAL:1 ENSMUSG00000072605 Gm10376 ENSMUST00000169756 ENSMUSP00000128599 TRANSLATION protein_coding - - 1 184.0 0.0 3.15 0.0 63.9 0.0 -4,-6 0.738 - 12.0 PRINCIPAL:1 ENSMUSG00000096908 Trav7-3 ENSMUST00000177622 ENSMUSP00000137590 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.5 0.0 71.9 0.0 3,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000006529 Itih1 ENSMUST00000227938 - NO_TRANSLATION retained_intron ENSMUSG00000006529 Itih1 ENSMUST00000163118 ENSMUSP00000126449 TRANSLATION protein_coding - CCDS49435.1 1 907.0 4.0 12.3675 5.2 385.4 0.0 2,-2 1.0 19 14.0 PRINCIPAL:4 ENSMUSG00000006529 Itih1 ENSMUST00000006704 ENSMUSP00000006704 TRANSLATION protein_coding - CCDS79287.1 1 911.0 4.0 12.3675 4.2 385.4 0.0 2,-2 0.9344 19 13.524 ALTERNATIVE:2 ENSMUSG00000104629 Trav13n-1 ENSMUST00000198359 ENSMUSP00000142913 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.0 0.0 54.6 0.0 4,-1 0.8257 - -2.0 PRINCIPAL:1 ENSMUSG00000041534 Rbp3 ENSMUST00000035695 ENSMUSP00000040249 TRANSLATION protein_coding - CCDS26929.1 1 1234.0 0.0 3.5 2.5 735.0 0.0 2,-2 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000094140 Or10g3 ENSMUST00000214980 ENSMUSP00000149717 TRANSLATION protein_coding - CCDS27056.1 5 313.0 0.0 0.8 15.6 163.6 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000094140 Or10g3 ENSMUST00000071221 ENSMUSP00000071208 TRANSLATION protein_coding - CCDS27056.1 - 313.0 0.0 0.8 15.6 163.6 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000002325 Irf9 ENSMUST00000145680 - NO_TRANSLATION retained_intron ENSMUSG00000002325 Irf9 ENSMUST00000134863 ENSMUSP00000120525 TRANSLATION protein_coding - CCDS49496.1 1 465.0 0.0 6.05 0.0 287.9 0.0 -4,-5 0.294 7 8.0 ALTERNATIVE:2 ENSMUSG00000002325 Irf9 ENSMUST00000138037 ENSMUSP00000119477 TRANSLATION protein_coding - CCDS49497.1 1 417.0 0.0 6.05 0.0 287.9 0.0 -4,-1 0.3959 7 8.0 ALTERNATIVE:2 ENSMUSG00000002325 Irf9 ENSMUST00000130697 ENSMUSP00000120359 TRANSLATION protein_coding - CCDS27119.1 1 399.0 0.0 6.05 0.4 287.9 0.0 -4,-7 1.0 7 8.0 PRINCIPAL:2 ENSMUSG00000002325 Irf9 ENSMUST00000136109 - NO_TRANSLATION retained_intron ENSMUSG00000002325 Irf9 ENSMUST00000226275 ENSMUSP00000154635 TRANSLATION protein_coding start - - 63.0 0.0 1.5 0.0 52.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002325 Irf9 ENSMUST00000126269 - NO_TRANSLATION retained_intron ENSMUSG00000045201 Lrrc3b ENSMUST00000163937 ENSMUSP00000128624 TRANSLATION protein_coding - CCDS26829.1 1 259.0 0.0 1.0 33.9 89.8 1.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000045201 Lrrc3b ENSMUST00000223700 ENSMUSP00000153616 TRANSLATION protein_coding - CCDS26829.1 - 259.0 0.0 1.0 33.9 89.8 1.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000045201 Lrrc3b ENSMUST00000055211 ENSMUSP00000059463 TRANSLATION protein_coding - CCDS26829.1 1 259.0 0.0 1.0 33.9 89.8 1.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000093969 Trav4n-4 ENSMUST00000103627 ENSMUSP00000100404 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.3 0.0 43.5 0.0 2,-2 0.8207 - -2.0 PRINCIPAL:1 ENSMUSG00000105080 Trav7n-6 ENSMUST00000178100 ENSMUSP00000136007 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.4 0.0 70.3 0.0 4,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000044772 Sntn ENSMUST00000061045 ENSMUSP00000062092 TRANSLATION protein_coding - CCDS26822.1 1 147.0 5.0 2.5 7.2 0.0 0.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000034893 Cog3 ENSMUST00000228081 - NO_TRANSLATION retained_intron ENSMUSG00000034893 Cog3 ENSMUST00000049168 ENSMUSP00000045016 TRANSLATION protein_coding - CCDS36979.1 1 828.0 0.0 0.0 6.4 177.2 0.0 -4,-5 1.0 29 8.0 PRINCIPAL:1 ENSMUSG00000034893 Cog3 ENSMUST00000226686 - NO_TRANSLATION retained_intron ENSMUSG00000076918 Traj11 ENSMUST00000103730 ENSMUSP00000142663 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000022074 Tnfrsf10b ENSMUST00000224533 - NO_TRANSLATION retained_intron ENSMUSG00000022074 Tnfrsf10b ENSMUST00000224235 - NO_TRANSLATION retained_intron ENSMUSG00000022074 Tnfrsf10b ENSMUST00000022663 ENSMUSP00000022663 TRANSLATION protein_coding - CCDS27243.1 1 381.0 0.0 1.8 0.0 126.4 0.0 -3,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000094285 Or11g27 ENSMUST00000071294 ENSMUSP00000071263 TRANSLATION protein_coding - CCDS49475.1 - 311.0 0.0 1.0 9.5 190.2 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094285 Or11g27 ENSMUST00000215793 ENSMUSP00000150946 TRANSLATION protein_coding - CCDS49475.1 5 311.0 0.0 1.0 9.5 190.2 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000000365 Rnf17 ENSMUST00000223627 ENSMUSP00000153222 TRANSLATION protein_coding - - - 626.0 7.0 0.0 0.0 26.8 0.0 -4,-5 0.0042 1 6.0 MINOR ENSMUSG00000000365 Rnf17 ENSMUST00000225621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000365 Rnf17 ENSMUST00000095793 ENSMUSP00000093469 TRANSLATION protein_coding - CCDS27149.1 1 1640.0 7.0 4.2175 0.4 272.9 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000000365 Rnf17 ENSMUST00000223646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000365 Rnf17 ENSMUST00000225737 ENSMUSP00000153573 TRANSLATION nonsense_mediated_decay start - - 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000365 Rnf17 ENSMUST00000225361 - NO_TRANSLATION retained_intron ENSMUSG00000076928 Trac ENSMUST00000103740 ENSMUSP00000100459 TRANSLATION TR_C_gene start - - 137.0 0.0 2.5 0.0 123.4 1.0 -4,-5 0.7497 3 -2.0 PRINCIPAL:1 ENSMUSG00000076928 Trac ENSMUST00000198398 ENSMUSP00000143014 TRANSLATION TR_C_gene start - - 137.0 0.0 2.5 0.0 123.4 1.0 -4,-5 0.7497 3 -2.0 PRINCIPAL:1 ENSMUSG00000076873 Trdv5 ENSMUST00000103685 ENSMUSP00000100458 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.1 0.0 69.2 0.0 2,-2 0.8226 - -2.0 PRINCIPAL:1 ENSMUSG00000021738 Atxn7 ENSMUST00000223714 ENSMUSP00000153613 TRANSLATION protein_coding - - - 920.0 8.0 1.35 0.1 92.8 0.0 -4,-6 0.1521 4 14.0 ALTERNATIVE:2 ENSMUSG00000021738 Atxn7 ENSMUST00000224370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021738 Atxn7 ENSMUST00000223880 ENSMUSP00000152934 TRANSLATION protein_coding - CCDS26823.1 - 867.0 8.0 1.35 0.0 92.8 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000021738 Atxn7 ENSMUST00000224616 - NO_TRANSLATION retained_intron ENSMUSG00000021738 Atxn7 ENSMUST00000225164 - NO_TRANSLATION retained_intron ENSMUSG00000021738 Atxn7 ENSMUST00000022257 ENSMUSP00000022257 TRANSLATION protein_coding - CCDS26823.1 1 867.0 8.0 1.35 0.0 92.8 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000021738 Atxn7 ENSMUST00000224315 ENSMUSP00000153048 TRANSLATION protein_coding start - - 106.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021738 Atxn7 ENSMUST00000223932 - NO_TRANSLATION retained_intron ENSMUSG00000021738 Atxn7 ENSMUST00000226073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094132 Gm3264 ENSMUST00000249607 ENSMUSP00000159816 TRANSLATION protein_coding - - - 243.0 0.0 3.0 0.0 75.7 0.0 -4,-5 0.7306 - 8.0 PRINCIPAL:2 ENSMUSG00000094132 Gm3264 ENSMUST00000249612 ENSMUSP00000159821 TRANSLATION protein_coding - - - 227.0 0.0 3.0 0.0 75.7 0.0 -4,-5 0.0155 - 8.0 ALTERNATIVE:2 ENSMUSG00000094132 Gm3264 ENSMUST00000249608 ENSMUSP00000159817 TRANSLATION protein_coding - - - 227.0 0.0 3.0 0.0 75.7 0.0 -4,-5 0.0155 - 8.0 ALTERNATIVE:2 ENSMUSG00000094132 Gm3264 ENSMUST00000249610 ENSMUSP00000159819 TRANSLATION protein_coding - - - 227.0 0.0 3.0 0.0 75.7 0.0 -4,-5 0.0155 - 8.0 ALTERNATIVE:2 ENSMUSG00000094132 Gm3264 ENSMUST00000249611 ENSMUSP00000159820 TRANSLATION nonsense_mediated_decay - - - 171.0 0.0 2.75 0.0 75.7 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000094132 Gm3264 ENSMUST00000249606 ENSMUSP00000159815 TRANSLATION protein_coding - - - 227.0 0.0 3.0 0.0 75.7 0.0 -4,-5 0.0155 - 8.0 ALTERNATIVE:2 ENSMUSG00000094132 Gm3264 ENSMUST00000249609 ENSMUSP00000159818 TRANSLATION protein_coding - - - 227.0 0.0 3.0 0.0 75.7 0.0 -4,-5 0.0155 - 8.0 ALTERNATIVE:2 ENSMUSG00000094132 Gm3264 ENSMUST00000249605 ENSMUSP00000159814 TRANSLATION protein_coding - - - 172.0 0.0 3.0 0.0 68.8 0.0 -4,-5 0.0265 - 7.0 ALTERNATIVE:2 ENSMUSG00000094132 Gm3264 ENSMUST00000166776 ENSMUSP00000131011 TRANSLATION protein_coding - - 5 227.0 0.0 3.0 0.0 75.7 0.0 -4,-5 0.0155 - 8.0 ALTERNATIVE:2 ENSMUSG00000094132 Gm3264 ENSMUST00000249604 ENSMUSP00000159813 TRANSLATION protein_coding - - - 227.0 0.0 3.0 0.0 75.7 0.0 -4,-5 0.0155 - 8.0 ALTERNATIVE:2 ENSMUSG00000022218 Tgm1 ENSMUST00000227958 ENSMUSP00000154784 TRANSLATION protein_coding stop - - 164.0 0.0 1.13 0.0 53.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022218 Tgm1 ENSMUST00000168729 ENSMUSP00000128090 TRANSLATION protein_coding - CCDS36932.1 5 815.0 10.0 12.12 3.2 293.9 0.0 -4,-5 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000022218 Tgm1 ENSMUST00000226907 ENSMUSP00000154239 TRANSLATION protein_coding stop - - 167.0 0.0 1.13 0.0 55.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022218 Tgm1 ENSMUST00000228123 ENSMUSP00000154744 TRANSLATION protein_coding stop - - 116.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022218 Tgm1 ENSMUST00000002389 ENSMUSP00000002389 TRANSLATION protein_coding - CCDS36932.1 1 815.0 10.0 12.12 3.2 293.9 0.0 -4,-5 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000022218 Tgm1 ENSMUST00000178034 ENSMUSP00000137642 TRANSLATION protein_coding - CCDS36932.1 1 815.0 10.0 12.12 3.2 293.9 0.0 -4,-5 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000021953 Tdh ENSMUST00000165776 ENSMUSP00000129206 TRANSLATION nonsense_mediated_decay start - 5 191.0 22.0 2.6 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000021953 Tdh ENSMUST00000167685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021953 Tdh ENSMUST00000170772 - NO_TRANSLATION retained_intron ENSMUSG00000021953 Tdh ENSMUST00000168669 ENSMUSP00000132119 TRANSLATION nonsense_mediated_decay start - 5 219.0 27.0 3.6 0.0 47.7 0.0 -4,-1 0.0013 4 -2.0 MINOR ENSMUSG00000021953 Tdh ENSMUST00000168488 ENSMUSP00000131068 TRANSLATION nonsense_mediated_decay start - 5 169.0 19.0 2.6 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000021953 Tdh ENSMUST00000022522 ENSMUSP00000022522 TRANSLATION protein_coding - CCDS27202.1 1 373.0 32.0 7.28 12.7 71.3 0.0 -4,-2 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000021982 Cdadc1 ENSMUST00000224968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021982 Cdadc1 ENSMUST00000167100 ENSMUSP00000128022 TRANSLATION protein_coding - - 1 497.0 6.0 0.828 0.0 63.8 0.0 -4,-5 0.1849 8 12.0 ALTERNATIVE:2 ENSMUSG00000021982 Cdadc1 ENSMUST00000225103 - NO_TRANSLATION retained_intron ENSMUSG00000021982 Cdadc1 ENSMUST00000171683 ENSMUSP00000128064 TRANSLATION protein_coding - CCDS49515.1 1 500.0 6.0 0.828 0.1 63.8 0.0 -4,-5 0.3273 8 12.0 ALTERNATIVE:2 ENSMUSG00000021982 Cdadc1 ENSMUST00000225839 ENSMUSP00000153357 TRANSLATION protein_coding - CCDS49514.1 - 525.0 6.0 0.828 0.8 63.8 0.0 -4,-5 0.5635 8 12.0 ALTERNATIVE:2 ENSMUSG00000021982 Cdadc1 ENSMUST00000223842 - NO_TRANSLATION retained_intron ENSMUSG00000021982 Cdadc1 ENSMUST00000056997 ENSMUSP00000052233 TRANSLATION protein_coding - CCDS36940.1 1 523.0 6.0 0.828 1.5 63.8 0.0 -4,-5 1.0 8 13.0 PRINCIPAL:2 ENSMUSG00000021982 Cdadc1 ENSMUST00000022555 ENSMUSP00000022555 TRANSLATION protein_coding - CCDS49513.1 1 499.0 6.0 0.828 0.0 63.8 0.0 -4,-5 0.4251 8 12.0 ALTERNATIVE:2 ENSMUSG00000021973 Micu2 ENSMUST00000224607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021973 Micu2 ENSMUST00000022543 ENSMUSP00000022543 TRANSLATION protein_coding - CCDS27163.1 1 432.0 7.0 8.705 7.2 23.2 0.0 -1,3 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000021973 Micu2 ENSMUST00000225961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021973 Micu2 ENSMUST00000225116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021973 Micu2 ENSMUST00000224984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093954 Gm16867 ENSMUST00000184816 ENSMUSP00000138904 TRANSLATION nonsense_mediated_decay - - 1 112.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0197 - -2.0 MINOR ENSMUSG00000093954 Gm16867 ENSMUST00000180059 ENSMUSP00000137543 TRANSLATION protein_coding stop - 5 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0194 - -2.0 MINOR ENSMUSG00000093954 Gm16867 ENSMUST00000183695 ENSMUSP00000138883 TRANSLATION nonsense_mediated_decay - - 1 112.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0197 - -2.0 MINOR ENSMUSG00000093954 Gm16867 ENSMUST00000184039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093954 Gm16867 ENSMUST00000183840 ENSMUSP00000138845 TRANSLATION nonsense_mediated_decay - - 1 108.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0197 - -2.0 MINOR ENSMUSG00000093954 Gm16867 ENSMUST00000183917 ENSMUSP00000139085 TRANSLATION nonsense_mediated_decay - - 1 78.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0881 - -2.0 MINOR ENSMUSG00000093954 Gm16867 ENSMUST00000179116 ENSMUSP00000135940 TRANSLATION protein_coding - - 1 81.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5623 - 0.0 PRINCIPAL:1 ENSMUSG00000096825 Trav12-1 ENSMUST00000200115 ENSMUSP00000143545 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.1 0.0 48.5 0.0 4,-1 0.8234 - -2.0 PRINCIPAL:1 ENSMUSG00000022052 Ppp2r2a ENSMUST00000223630 - NO_TRANSLATION retained_intron ENSMUSG00000022052 Ppp2r2a ENSMUST00000225469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022052 Ppp2r2a ENSMUST00000225251 ENSMUSP00000153452 TRANSLATION nonsense_mediated_decay - - - 50.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0034 - -2.0 MINOR ENSMUSG00000022052 Ppp2r2a ENSMUST00000089230 ENSMUSP00000086640 TRANSLATION protein_coding - CCDS56967.1 1 447.0 0.0 8.75 32.0 0.0 0.0 -4,-5 1.0 10 10.0 PRINCIPAL:1 ENSMUSG00000022052 Ppp2r2a ENSMUST00000225380 ENSMUSP00000153191 TRANSLATION protein_coding - - - 367.0 0.0 7.75 0.0 0.0 0.0 -4,-5 0.0118 7 4.002 MINOR ENSMUSG00000021792 Prxl2a ENSMUST00000153830 ENSMUSP00000117278 TRANSLATION protein_coding stop - 2 229.0 0.0 5.76 14.0 53.3 1.0 -4,-7 0.8571 12 -2.0 MINOR ENSMUSG00000021792 Prxl2a ENSMUST00000130166 ENSMUSP00000122866 TRANSLATION protein_coding stop - 3 176.0 0.0 4.18 0.0 43.0 1.0 0,-3 0.0029 10 -2.0 MINOR ENSMUSG00000021792 Prxl2a ENSMUST00000152837 ENSMUSP00000123109 TRANSLATION protein_coding stop - 3 48.0 0.0 0.0 0.0 0.0 1.0 0,-3 0.0019 2 -2.0 MINOR ENSMUSG00000021792 Prxl2a ENSMUST00000143143 ENSMUSP00000115839 TRANSLATION protein_coding stop - 2 174.0 0.0 4.18 0.0 39.4 1.0 0,-3 0.0029 10 -2.0 MINOR ENSMUSG00000021792 Prxl2a ENSMUST00000135797 - NO_TRANSLATION retained_intron ENSMUSG00000021792 Prxl2a ENSMUST00000022317 ENSMUSP00000022317 TRANSLATION protein_coding - CCDS26957.1 1 218.0 0.0 5.76 6.4 53.3 1.0 0,-3 0.727 12 13.66 MINOR ENSMUSG00000021792 Prxl2a ENSMUST00000134715 ENSMUSP00000115439 TRANSLATION protein_coding stop - 5 103.0 0.0 2.43 0.0 0.0 1.0 0,-3 0.0049 5 -2.0 MINOR ENSMUSG00000021792 Prxl2a ENSMUST00000118466 ENSMUSP00000112377 TRANSLATION protein_coding - CCDS84116.1 1 229.0 0.0 5.76 14.0 53.3 1.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000021792 Prxl2a ENSMUST00000128236 ENSMUSP00000120052 TRANSLATION protein_coding stop - 5 89.0 0.0 1.93 0.0 0.0 1.0 0,-3 0.0049 3 -2.0 MINOR ENSMUSG00000021792 Prxl2a ENSMUST00000136661 ENSMUSP00000121795 TRANSLATION protein_coding stop - 5 203.0 0.0 5.26 0.0 53.3 1.0 0,-3 0.0344 10 -2.0 MINOR ENSMUSG00000059674 Cdh24 ENSMUST00000227124 ENSMUSP00000154248 TRANSLATION protein_coding start/stop - - 253.0 14.0 2.84 0.0 0.0 1.0 -4,-6 0.0015 - -2.0 MINOR ENSMUSG00000059674 Cdh24 ENSMUST00000067784 ENSMUSP00000066005 TRANSLATION protein_coding - CCDS36923.1 5 781.0 48.0 8.72 9.0 390.9 1.0 2,-3 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000076914 Traj15 ENSMUST00000103726 ENSMUSP00000143467 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000021983 Atp8a2 ENSMUST00000080368 ENSMUSP00000079238 TRANSLATION protein_coding - CCDS27174.1 1 1148.0 3.0 26.3 13.8 462.4 10.0 -4,-6 1.0 19 19.0 PRINCIPAL:1 ENSMUSG00000021983 Atp8a2 ENSMUST00000140924 ENSMUSP00000121469 TRANSLATION protein_coding stop - 3 73.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000021983 Atp8a2 ENSMUST00000152688 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021983 Atp8a2 ENSMUST00000131670 ENSMUSP00000119395 TRANSLATION protein_coding - - 2 160.0 0.0 3.65 0.0 93.3 4.0 -4,-5 0.0021 2 0.0 MINOR ENSMUSG00000021983 Atp8a2 ENSMUST00000145071 ENSMUSP00000115592 TRANSLATION nonsense_mediated_decay - - 1 129.0 0.0 3.65 0.0 93.3 4.0 -4,-6 0.0021 2 -2.0 MINOR ENSMUSG00000021983 Atp8a2 ENSMUST00000149414 ENSMUSP00000122078 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0126 - -2.0 MINOR ENSMUSG00000021936 Mapk8 ENSMUST00000111943 ENSMUSP00000107574 TRANSLATION protein_coding - CCDS84111.1 1 384.0 17.0 9.18 16.2 214.6 0.0 -4,-6 0.8966 4 14.98 ALTERNATIVE:1 ENSMUSG00000021936 Mapk8 ENSMUST00000022504 ENSMUSP00000022504 TRANSLATION protein_coding - CCDS79293.1 1 427.0 17.0 9.18 21.4 214.6 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:4 ENSMUSG00000021936 Mapk8 ENSMUST00000111942 ENSMUSP00000107573 TRANSLATION protein_coding - - 5 308.0 17.0 7.43 1.0 152.1 0.0 -4,-6 0.0127 2 8.502 MINOR ENSMUSG00000021936 Mapk8 ENSMUST00000226798 ENSMUSP00000153833 TRANSLATION nonsense_mediated_decay - - - 40.0 4.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021936 Mapk8 ENSMUST00000111944 ENSMUSP00000107575 TRANSLATION protein_coding - CCDS79295.1 1 427.0 17.0 9.18 19.2 214.0 0.0 -4,-6 0.9898 3 15.568 ALTERNATIVE:1 ENSMUSG00000021936 Mapk8 ENSMUST00000150659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021936 Mapk8 ENSMUST00000130539 - NO_TRANSLATION retained_intron ENSMUSG00000021936 Mapk8 ENSMUST00000132379 - NO_TRANSLATION retained_intron ENSMUSG00000021936 Mapk8 ENSMUST00000127143 - NO_TRANSLATION retained_intron ENSMUSG00000021936 Mapk8 ENSMUST00000227306 - NO_TRANSLATION retained_intron ENSMUSG00000021936 Mapk8 ENSMUST00000111945 ENSMUSP00000107576 TRANSLATION protein_coding - CCDS36869.1 1 384.0 17.0 9.18 16.2 214.0 0.0 -4,-6 0.8729 3 14.98 ALTERNATIVE:1 ENSMUSG00000096574 Gm2956 ENSMUST00000249376 ENSMUSP00000159734 TRANSLATION protein_coding - - - 150.0 0.0 3.0 0.0 68.5 0.0 -4,-5 0.0258 - 7.0 ALTERNATIVE:2 ENSMUSG00000096574 Gm2956 ENSMUST00000177786 ENSMUSP00000137230 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 74.5 0.0 -4,-5 0.7376 - 8.0 PRINCIPAL:2 ENSMUSG00000096574 Gm2956 ENSMUST00000249374 ENSMUSP00000159732 TRANSLATION protein_coding - - - 150.0 0.0 3.0 0.0 68.5 0.0 -4,-5 0.0258 - 7.0 ALTERNATIVE:2 ENSMUSG00000096574 Gm2956 ENSMUST00000249377 ENSMUSP00000159735 TRANSLATION protein_coding - - - 205.0 0.0 3.0 0.0 74.5 0.0 -4,-5 0.7376 - 8.0 PRINCIPAL:2 ENSMUSG00000096574 Gm2956 ENSMUST00000249375 ENSMUSP00000159733 TRANSLATION protein_coding - - - 205.0 0.0 3.0 0.0 74.5 0.0 -4,-5 0.7376 - 8.0 PRINCIPAL:2 ENSMUSG00000050350 Gpr18 ENSMUST00000055475 ENSMUSP00000061410 TRANSLATION protein_coding - CCDS27342.1 1 331.0 0.0 0.4 13.4 117.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000043004 Gng2 ENSMUST00000159028 ENSMUSP00000125141 TRANSLATION protein_coding - CCDS26840.1 2 71.0 0.0 1.75 33.2 70.6 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000043004 Gng2 ENSMUST00000160013 ENSMUSP00000125697 TRANSLATION protein_coding - CCDS26840.1 1 71.0 0.0 1.75 33.2 70.6 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000043004 Gng2 ENSMUST00000161247 ENSMUSP00000124725 TRANSLATION protein_coding - CCDS26840.1 3 71.0 0.0 1.75 33.2 70.6 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000043004 Gng2 ENSMUST00000159073 ENSMUSP00000125000 TRANSLATION protein_coding - CCDS26840.1 2 71.0 0.0 1.75 33.2 70.6 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000043004 Gng2 ENSMUST00000162425 ENSMUSP00000124153 TRANSLATION protein_coding - CCDS26840.1 3 71.0 0.0 1.75 33.2 70.6 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000043004 Gng2 ENSMUST00000055100 ENSMUSP00000055256 TRANSLATION protein_coding - CCDS26840.1 3 71.0 0.0 1.75 33.2 70.6 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000076761 Trav5-1 ENSMUST00000103570 ENSMUSP00000100347 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.25 0.0 65.6 0.0 1,-2 0.8245 - -2.0 PRINCIPAL:1 ENSMUSG00000040759 Cmtm5 ENSMUST00000226807 - NO_TRANSLATION retained_intron ENSMUSG00000040759 Cmtm5 ENSMUST00000227441 ENSMUSP00000153874 TRANSLATION protein_coding - - - 105.0 0.0 0.78 1.7 0.0 3.0 -4,-6 0.2247 2 6.27 MINOR ENSMUSG00000040759 Cmtm5 ENSMUST00000037814 ENSMUSP00000036138 TRANSLATION protein_coding - CCDS27105.1 1 156.0 0.0 0.78 8.8 0.0 5.0 -4,-7 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000043881 Kbtbd7 ENSMUST00000061222 ENSMUSP00000060768 TRANSLATION protein_coding - CCDS27298.1 - 690.0 0.0 0.2 1.8 178.7 0.0 -4,-2 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000041014 Nrg3 ENSMUST00000173780 ENSMUSP00000134727 TRANSLATION protein_coding - - 5 689.0 0.0 0.8 0.0 37.6 2.0 -3,-5 0.1405 - 6.0 ALTERNATIVE:2 ENSMUSG00000041014 Nrg3 ENSMUST00000166968 ENSMUSP00000136884 TRANSLATION protein_coding - CCDS26954.1 1 713.0 0.0 0.8 0.0 37.6 2.0 -3,-5 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000041014 Nrg3 ENSMUST00000168810 ENSMUSP00000129783 TRANSLATION protein_coding - CCDS49450.1 1 697.0 0.0 0.8 0.0 36.2 2.0 -3,-5 0.4835 - 6.0 ALTERNATIVE:2 ENSMUSG00000041014 Nrg3 ENSMUST00000176122 - NO_TRANSLATION retained_intron ENSMUSG00000023411 Nfatc4 ENSMUST00000226869 - NO_TRANSLATION retained_intron ENSMUSG00000023411 Nfatc4 ENSMUST00000228308 ENSMUSP00000154776 TRANSLATION protein_coding start/stop - - 170.0 0.0 4.198 0.0 93.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000023411 Nfatc4 ENSMUST00000226979 ENSMUSP00000154813 TRANSLATION protein_coding stop - - 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023411 Nfatc4 ENSMUST00000226293 - NO_TRANSLATION retained_intron ENSMUSG00000023411 Nfatc4 ENSMUST00000227746 - NO_TRANSLATION retained_intron ENSMUSG00000023411 Nfatc4 ENSMUST00000024179 ENSMUSP00000024179 TRANSLATION protein_coding - CCDS27132.1 1 901.0 0.0 7.165 3.3 147.6 0.0 -4,-5 1.0 8 9.0 PRINCIPAL:2 ENSMUSG00000023411 Nfatc4 ENSMUST00000226357 ENSMUSP00000154682 TRANSLATION protein_coding - - - 831.0 0.0 7.165 0.8 147.6 0.0 -4,-6 0.2564 8 8.0 ALTERNATIVE:2 ENSMUSG00000023411 Nfatc4 ENSMUST00000172271 ENSMUSP00000132763 TRANSLATION protein_coding - CCDS49500.1 1 890.0 0.0 7.165 0.0 147.6 0.0 -4,-5 0.3726 8 8.0 ALTERNATIVE:2 ENSMUSG00000023411 Nfatc4 ENSMUST00000226834 - NO_TRANSLATION retained_intron ENSMUSG00000023411 Nfatc4 ENSMUST00000226536 - NO_TRANSLATION retained_intron ENSMUSG00000023411 Nfatc4 ENSMUST00000226716 - NO_TRANSLATION retained_intron ENSMUSG00000041471 Shld2 ENSMUST00000227006 ENSMUSP00000154637 TRANSLATION protein_coding stop - - 75.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000041471 Shld2 ENSMUST00000227375 ENSMUSP00000154555 TRANSLATION protein_coding stop - - 129.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000041471 Shld2 ENSMUST00000228337 ENSMUSP00000153771 TRANSLATION protein_coding stop - - 114.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000041471 Shld2 ENSMUST00000111917 ENSMUSP00000107548 TRANSLATION protein_coding - CCDS36874.1 1 891.0 3.0 0.0 0.0 268.2 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000041471 Shld2 ENSMUST00000228626 ENSMUSP00000154080 TRANSLATION protein_coding - - - 488.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0035 - 0.0 MINOR ENSMUSG00000041471 Shld2 ENSMUST00000228132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041471 Shld2 ENSMUST00000228704 ENSMUSP00000154214 TRANSLATION protein_coding stop - - 216.0 4.0 0.0 0.0 103.4 0.0 -4,-6 0.0006 - -2.0 MINOR ENSMUSG00000022176 Rem2 ENSMUST00000164766 ENSMUSP00000127199 TRANSLATION protein_coding - CCDS27090.2 1 341.0 14.0 3.85 8.5 100.8 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000022176 Rem2 ENSMUST00000170337 - NO_TRANSLATION retained_intron ENSMUSG00000022176 Rem2 ENSMUST00000168930 ENSMUSP00000131989 TRANSLATION protein_coding start - 5 140.0 7.0 1.25 0.0 23.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022176 Rem2 ENSMUST00000164697 ENSMUSP00000132998 TRANSLATION protein_coding - - 5 180.0 7.0 0.5 0.0 0.0 0.0 -4,-5 0.0 3 1.332 MINOR ENSMUSG00000064128 Cenpj ENSMUST00000224748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064128 Cenpj ENSMUST00000229861 ENSMUSP00000155215 TRANSLATION protein_coding start/stop - - 439.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000064128 Cenpj ENSMUST00000065302 ENSMUSP00000065949 TRANSLATION protein_coding - CCDS27150.1 1 1344.0 0.0 4.15 0.0 288.9 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000064128 Cenpj ENSMUST00000226026 - NO_TRANSLATION retained_intron ENSMUSG00000064128 Cenpj ENSMUST00000225951 ENSMUSP00000153013 TRANSLATION protein_coding - CCDS27150.1 - 1344.0 0.0 4.15 0.0 288.9 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000092165 Gm5624 ENSMUST00000249477 ENSMUSP00000159772 TRANSLATION nonsense_mediated_decay - - - 69.0 0.0 1.165 0.0 56.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000092165 Gm5624 ENSMUST00000228629 ENSMUSP00000153804 TRANSLATION nonsense_mediated_decay - - - 43.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000092165 Gm5624 ENSMUST00000226458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000092165 Gm5624 ENSMUST00000227882 ENSMUSP00000154449 TRANSLATION protein_coding - - - 162.0 0.0 3.58 0.0 83.6 0.0 -4,-5 0.7389 - 12.0 PRINCIPAL:1 ENSMUSG00000092232 Gm20521 ENSMUST00000134077 ENSMUSP00000117229 TRANSLATION protein_coding,RT - - 5 333.0 0.0 4.8 1.7 195.7 0.0 -4,-6 0.8342 - -2.0 PRINCIPAL:1 ENSMUSG00000093979 Gm2237 ENSMUST00000112595 ENSMUSP00000108214 TRANSLATION protein_coding - - 1 156.0 0.0 3.0 0.0 69.4 0.0 -4,-5 0.0258 - 7.0 ALTERNATIVE:2 ENSMUSG00000093979 Gm2237 ENSMUST00000170694 ENSMUSP00000133164 TRANSLATION protein_coding - - 5 211.0 0.0 3.0 0.0 75.4 0.0 -4,-5 0.739 - 8.0 PRINCIPAL:2 ENSMUSG00000076921 Traj7 ENSMUST00000103733 ENSMUSP00000143149 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021952 Xpo4 ENSMUST00000172539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021952 Xpo4 ENSMUST00000172647 - NO_TRANSLATION retained_intron ENSMUSG00000021952 Xpo4 ENSMUST00000173172 - NO_TRANSLATION retained_intron ENSMUSG00000021952 Xpo4 ENSMUST00000173638 - NO_TRANSLATION retained_intron ENSMUSG00000021952 Xpo4 ENSMUST00000172524 ENSMUSP00000134219 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000021952 Xpo4 ENSMUST00000174545 ENSMUSP00000133280 TRANSLATION protein_coding - CCDS56961.1 1 1151.0 0.0 13.51 23.6 21.5 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000021952 Xpo4 ENSMUST00000174152 ENSMUSP00000133497 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0004 1 -2.0 MINOR ENSMUSG00000021952 Xpo4 ENSMUST00000173940 - NO_TRANSLATION retained_intron ENSMUSG00000094877 Trav3n-3 ENSMUST00000197557 ENSMUSP00000142822 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.25 0.0 56.9 0.0 0,-3 0.8177 - -2.0 PRINCIPAL:5 ENSMUSG00000094877 Trav3n-3 ENSMUST00000103625 ENSMUSP00000100402 TRANSLATION TR_V_gene start/stop - - 92.0 0.0 1.0 0.0 56.9 0.0 -4,-5 0.0225 - -2.0 ALTERNATIVE:2 ENSMUSG00000041703 Zic5 ENSMUST00000143084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041703 Zic5 ENSMUST00000039118 ENSMUSP00000035754 TRANSLATION protein_coding - CCDS27348.1 1 622.0 21.0 0.7 0.1 64.9 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000048379 Socs4 ENSMUST00000227413 ENSMUSP00000154000 TRANSLATION protein_coding stop - - 129.0 0.0 0.8 0.0 67.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048379 Socs4 ENSMUST00000065562 ENSMUSP00000066031 TRANSLATION protein_coding - CCDS26985.1 1 436.0 0.0 1.8 7.2 142.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000000776 Polr3d ENSMUST00000226549 - NO_TRANSLATION retained_intron ENSMUSG00000000776 Polr3d ENSMUST00000226523 - NO_TRANSLATION retained_intron ENSMUSG00000000776 Polr3d ENSMUST00000227748 - NO_TRANSLATION retained_intron ENSMUSG00000000776 Polr3d ENSMUST00000227985 - NO_TRANSLATION retained_intron ENSMUSG00000000776 Polr3d ENSMUST00000000793 ENSMUSP00000000793 TRANSLATION protein_coding - CCDS27253.1 1 398.0 0.0 1.5 18.7 102.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000000776 Polr3d ENSMUST00000180358 ENSMUSP00000137614 TRANSLATION protein_coding - CCDS27253.1 1 398.0 0.0 1.5 18.7 102.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000096138 Trav7-6 ENSMUST00000184687 ENSMUSP00000139015 TRANSLATION TR_V_gene start/stop - - 91.0 0.0 1.0 0.0 72.1 0.0 -4,-5 0.0227 - -2.0 ALTERNATIVE:2 ENSMUSG00000096138 Trav7-6 ENSMUST00000103641 ENSMUSP00000100418 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.4 0.0 72.1 0.0 4,-1 0.8208 - -2.0 PRINCIPAL:5 ENSMUSG00000051969 Tlr11 ENSMUST00000185091 ENSMUSP00000138814 TRANSLATION protein_coding - CCDS27012.2 2 931.0 0.0 0.1 0.1 89.3 1.0 -2,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000051969 Tlr11 ENSMUST00000063570 ENSMUSP00000068906 TRANSLATION protein_coding - - - 926.0 0.0 0.1 0.0 89.3 1.0 0,-5 0.3461 - 8.0 ALTERNATIVE:2 ENSMUSG00000090440 1700049E17Rik2 ENSMUST00000163912 ENSMUSP00000130091 TRANSLATION protein_coding - - 5 198.0 0.0 3.0 0.0 85.7 0.0 -4,-2 0.7582 - 8.0 PRINCIPAL:2 ENSMUSG00000090440 1700049E17Rik2 ENSMUST00000111874 ENSMUSP00000107505 TRANSLATION protein_coding - - 5 163.0 0.0 3.0 0.0 85.7 0.0 -4,-7 0.0176 - 8.0 ALTERNATIVE:2 ENSMUSG00000079197 Psme2 ENSMUST00000159282 - NO_TRANSLATION retained_intron ENSMUSG00000079197 Psme2 ENSMUST00000159687 ENSMUSP00000125596 TRANSLATION protein_coding stop - 3 165.0 0.0 4.51 0.0 175.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000079197 Psme2 ENSMUST00000162496 - NO_TRANSLATION retained_intron ENSMUSG00000079197 Psme2 ENSMUST00000161807 ENSMUSP00000123798 TRANSLATION protein_coding - CCDS49494.1 1 239.0 0.0 6.84 23.9 264.8 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000079197 Psme2 ENSMUST00000161573 - NO_TRANSLATION retained_intron ENSMUSG00000079197 Psme2 ENSMUST00000159297 - NO_TRANSLATION retained_intron ENSMUSG00000079197 Psme2 ENSMUST00000162700 - NO_TRANSLATION retained_intron ENSMUSG00000079197 Psme2 ENSMUST00000111378 ENSMUSP00000107009 TRANSLATION protein_coding - CCDS49495.1 5 231.0 0.0 6.34 0.0 259.1 0.0 -4,-6 0.0819 - 10.656 MINOR ENSMUSG00000079197 Psme2 ENSMUST00000159845 - NO_TRANSLATION retained_intron ENSMUSG00000079197 Psme2 ENSMUST00000161027 - NO_TRANSLATION retained_intron ENSMUSG00000030662 Ipo5 ENSMUST00000032898 ENSMUSP00000032898 TRANSLATION protein_coding - CCDS37014.1 1 1097.0 0.0 24.5 7.5 56.4 0.0 -4,-7 1.0 33 14.0 PRINCIPAL:1 ENSMUSG00000030662 Ipo5 ENSMUST00000227270 - NO_TRANSLATION retained_intron ENSMUSG00000030662 Ipo5 ENSMUST00000228277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047441 Antxrl ENSMUST00000227979 ENSMUSP00000153806 TRANSLATION protein_coding stop - - 49.0 3.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047441 Antxrl ENSMUST00000058725 ENSMUSP00000052816 TRANSLATION protein_coding - CCDS26931.1 1 641.0 5.0 9.25 0.0 207.0 0.0 3,-2 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000047441 Antxrl ENSMUST00000226211 ENSMUSP00000153795 TRANSLATION protein_coding stop - - 120.0 3.0 2.25 0.0 39.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000021998 Lcp1 ENSMUST00000122840 ENSMUSP00000117984 TRANSLATION protein_coding stop - 5 101.0 12.0 2.5 0.0 42.8 0.0 -4,-5 0.0005 6 -2.0 MINOR ENSMUSG00000021998 Lcp1 ENSMUST00000143539 ENSMUSP00000118721 TRANSLATION protein_coding stop - 2 76.0 12.0 1.75 0.0 42.3 0.0 -4,-5 0.0005 6 -2.0 MINOR ENSMUSG00000021998 Lcp1 ENSMUST00000131802 ENSMUSP00000117137 TRANSLATION protein_coding - CCDS27276.1 1 627.0 12.0 14.1 20.8 335.7 0.0 -4,-5 1.0 34 22.0 PRINCIPAL:1 ENSMUSG00000021998 Lcp1 ENSMUST00000149883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021998 Lcp1 ENSMUST00000148609 - NO_TRANSLATION retained_intron ENSMUSG00000021998 Lcp1 ENSMUST00000145303 ENSMUSP00000116271 TRANSLATION protein_coding - CCDS27276.1 1 627.0 12.0 14.1 20.8 335.7 0.0 -4,-5 1.0 34 22.0 PRINCIPAL:1 ENSMUSG00000021998 Lcp1 ENSMUST00000124499 ENSMUSP00000121201 TRANSLATION protein_coding - CCDS27276.1 1 627.0 12.0 14.1 20.8 335.7 0.0 -4,-5 1.0 34 22.0 PRINCIPAL:1 ENSMUSG00000021998 Lcp1 ENSMUST00000125833 ENSMUSP00000116033 TRANSLATION protein_coding stop - 3 104.0 12.0 2.5 0.0 42.8 0.0 -4,-5 0.0005 6 -2.0 MINOR ENSMUSG00000021998 Lcp1 ENSMUST00000134114 ENSMUSP00000121376 TRANSLATION protein_coding stop - 3 121.0 12.0 2.6 0.0 42.8 0.0 -4,-5 0.0005 6 -2.0 MINOR ENSMUSG00000021998 Lcp1 ENSMUST00000124608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021998 Lcp1 ENSMUST00000130510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022012 Enox1 ENSMUST00000228845 - NO_TRANSLATION retained_intron ENSMUSG00000022012 Enox1 ENSMUST00000228102 - NO_TRANSLATION retained_intron ENSMUSG00000022012 Enox1 ENSMUST00000226576 - NO_TRANSLATION retained_intron ENSMUSG00000022012 Enox1 ENSMUST00000022589 ENSMUSP00000022589 TRANSLATION protein_coding - CCDS27290.1 1 643.0 0.0 3.0 4.5 35.6 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000022012 Enox1 ENSMUST00000228148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022012 Enox1 ENSMUST00000227831 ENSMUSP00000154296 TRANSLATION nonsense_mediated_decay - - - 345.0 0.0 3.0 1.1 35.6 0.0 -4,-5 0.27 - -2.0 MINOR ENSMUSG00000022012 Enox1 ENSMUST00000227662 ENSMUSP00000154512 TRANSLATION protein_coding - - - 662.0 0.0 3.0 0.1 35.6 0.0 -4,-5 0.1395 1 12.0 MINOR ENSMUSG00000022214 Dcaf11 ENSMUST00000155029 - NO_TRANSLATION retained_intron ENSMUSG00000022214 Dcaf11 ENSMUST00000117701 ENSMUSP00000113620 TRANSLATION protein_coding - - 5 509.0 0.0 4.23 0.0 61.6 0.0 -4,-2 0.0602 10 8.0 ALTERNATIVE:2 ENSMUSG00000022214 Dcaf11 ENSMUST00000143375 ENSMUSP00000121570 TRANSLATION nonsense_mediated_decay - - 5 141.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000022214 Dcaf11 ENSMUST00000150019 ENSMUSP00000117617 TRANSLATION nonsense_mediated_decay - - 1 71.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000022214 Dcaf11 ENSMUST00000117236 ENSMUSP00000113014 TRANSLATION protein_coding - CCDS27115.1 1 549.0 0.0 4.23 3.7 61.6 0.0 -4,-2 1.0 14 9.0 PRINCIPAL:2 ENSMUSG00000022214 Dcaf11 ENSMUST00000129310 - NO_TRANSLATION retained_intron ENSMUSG00000022214 Dcaf11 ENSMUST00000151245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022214 Dcaf11 ENSMUST00000145983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022214 Dcaf11 ENSMUST00000072530 ENSMUSP00000072344 TRANSLATION protein_coding - CCDS27115.1 1 549.0 0.0 4.23 3.7 61.6 0.0 -4,-2 1.0 14 9.0 PRINCIPAL:2 ENSMUSG00000022214 Dcaf11 ENSMUST00000121622 ENSMUSP00000113202 TRANSLATION protein_coding - CCDS27115.1 5 549.0 0.0 4.23 3.7 61.6 0.0 -4,-2 1.0 14 9.0 PRINCIPAL:2 ENSMUSG00000022214 Dcaf11 ENSMUST00000150481 ENSMUSP00000119001 TRANSLATION protein_coding stop - 3 203.0 0.0 0.5 0.0 0.0 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000022214 Dcaf11 ENSMUST00000143431 ENSMUSP00000118762 TRANSLATION protein_coding stop - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000022214 Dcaf11 ENSMUST00000153638 - NO_TRANSLATION retained_intron ENSMUSG00000022214 Dcaf11 ENSMUST00000152681 ENSMUSP00000120296 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000022214 Dcaf11 ENSMUST00000127991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022214 Dcaf11 ENSMUST00000128490 ENSMUSP00000114211 TRANSLATION protein_coding - CCDS27115.1 2 549.0 0.0 4.23 3.7 61.6 0.0 -4,-2 1.0 14 9.0 PRINCIPAL:2 ENSMUSG00000022214 Dcaf11 ENSMUST00000147981 ENSMUSP00000123453 TRANSLATION protein_coding stop - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000022214 Dcaf11 ENSMUST00000133256 ENSMUSP00000118404 TRANSLATION protein_coding stop - 5 65.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000036291 Ap5m1 ENSMUST00000228238 ENSMUSP00000154186 TRANSLATION protein_coding - - - 307.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0021 3 0.0 MINOR ENSMUSG00000036291 Ap5m1 ENSMUST00000227410 ENSMUSP00000154044 TRANSLATION nonsense_mediated_decay - - - 99.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000036291 Ap5m1 ENSMUST00000227066 ENSMUSP00000153926 TRANSLATION protein_coding start - - 101.0 0.0 0.0 0.0 32.4 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000036291 Ap5m1 ENSMUST00000227431 ENSMUSP00000153761 TRANSLATION protein_coding - - - 398.0 0.0 0.0 0.0 108.1 0.0 -4,-2 0.0022 5 3.474 MINOR ENSMUSG00000036291 Ap5m1 ENSMUST00000227991 ENSMUSP00000154211 TRANSLATION protein_coding start/stop - - 159.0 0.0 0.0 0.0 33.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000036291 Ap5m1 ENSMUST00000226695 ENSMUSP00000154575 TRANSLATION protein_coding start - - 60.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036291 Ap5m1 ENSMUST00000227608 ENSMUSP00000154035 TRANSLATION nonsense_mediated_decay - - - 90.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000036291 Ap5m1 ENSMUST00000037473 ENSMUSP00000046536 TRANSLATION protein_coding - CCDS26995.1 1 490.0 0.0 0.0 22.9 150.2 0.0 -4,-2 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000021806 Nid2 ENSMUST00000224057 - NO_TRANSLATION retained_intron ENSMUSG00000021806 Nid2 ENSMUST00000224263 ENSMUSP00000153102 TRANSLATION protein_coding start - - 1171.0 13.0 10.204 0.0 519.6 0.0 -4,-2 0.0896 35 -2.0 MINOR ENSMUSG00000021806 Nid2 ENSMUST00000022340 ENSMUSP00000022340 TRANSLATION protein_coding - CCDS36813.1 1 1403.0 13.0 11.965 0.1 596.8 0.0 3,-1 1.0 39 18.0 PRINCIPAL:1 ENSMUSG00000021806 Nid2 ENSMUST00000225791 - NO_TRANSLATION retained_intron ENSMUSG00000043157 Arl11 ENSMUST00000055159 ENSMUSP00000055447 TRANSLATION protein_coding - CCDS27182.1 1 176.0 17.0 1.0 3.4 183.5 0.0 -4,-6 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000043157 Arl11 ENSMUST00000224727 ENSMUSP00000153531 TRANSLATION protein_coding - CCDS27182.1 - 176.0 17.0 1.0 3.4 183.5 0.0 -4,-6 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000033060 Lmo7 ENSMUST00000159948 - NO_TRANSLATION retained_intron ENSMUSG00000033060 Lmo7 ENSMUST00000159026 ENSMUSP00000124605 TRANSLATION protein_coding stop - 1 471.0 0.0 0.0 0.0 167.1 0.0 -4,-5 0.0017 9 -2.0 MINOR ENSMUSG00000033060 Lmo7 ENSMUST00000159258 ENSMUSP00000125465 TRANSLATION nonsense_mediated_decay - - 1 422.0 0.0 0.0 0.0 50.3 0.0 -4,-5 0.0017 8 -2.0 MINOR ENSMUSG00000033060 Lmo7 ENSMUST00000100337 ENSMUSP00000097910 TRANSLATION protein_coding - CCDS37001.1 1 1699.0 8.0 6.694 0.0 319.8 0.0 -4,-5 1.0 52 18.0 PRINCIPAL:1 ENSMUSG00000033060 Lmo7 ENSMUST00000161668 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033060 Lmo7 ENSMUST00000160038 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033060 Lmo7 ENSMUST00000159597 ENSMUSP00000123706 TRANSLATION protein_coding start - 5 1604.0 8.0 4.0 0.0 267.5 0.0 -4,-6 0.0508 50 -2.0 MINOR ENSMUSG00000033060 Lmo7 ENSMUST00000159154 - NO_TRANSLATION retained_intron ENSMUSG00000033060 Lmo7 ENSMUST00000159806 ENSMUSP00000124300 TRANSLATION protein_coding start - 5 1189.0 8.0 3.4 0.0 241.0 0.0 -4,-5 0.0141 39 -2.0 MINOR ENSMUSG00000033060 Lmo7 ENSMUST00000159769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033060 Lmo7 ENSMUST00000159797 - NO_TRANSLATION retained_intron ENSMUSG00000033060 Lmo7 ENSMUST00000162091 - NO_TRANSLATION retained_intron ENSMUSG00000033060 Lmo7 ENSMUST00000159812 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033060 Lmo7 ENSMUST00000159850 ENSMUSP00000159141 TRANSLATION protein_coding start - 5 188.0 8.0 1.0 0.0 36.4 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000033060 Lmo7 ENSMUST00000159314 ENSMUSP00000124349 TRANSLATION protein_coding - CCDS84158.1 1 1453.0 0.0 2.4 0.0 231.1 0.0 -4,-5 0.0965 41 0.678 MINOR ENSMUSG00000033060 Lmo7 ENSMUST00000160876 - NO_TRANSLATION retained_intron ENSMUSG00000091698 Gm6526 ENSMUST00000249601 ENSMUSP00000159810 TRANSLATION nonsense_mediated_decay - - - 139.0 0.0 3.0 0.0 67.2 0.0 -4,-5 0.0034 - -2.0 MINOR ENSMUSG00000091698 Gm6526 ENSMUST00000100643 ENSMUSP00000098208 TRANSLATION protein_coding - - 5 198.0 0.0 3.2 0.0 82.0 0.0 -4,-7 0.7396 - 12.0 PRINCIPAL:1 ENSMUSG00000091698 Gm6526 ENSMUST00000249602 ENSMUSP00000159811 TRANSLATION nonsense_mediated_decay - - - 198.0 0.0 3.2 0.0 82.0 0.0 -4,-7 0.7396 - -2.0 MINOR ENSMUSG00000007591 Tssk4 ENSMUST00000228041 ENSMUSP00000154143 TRANSLATION protein_coding - - - 322.0 18.0 2.42375 2.2 200.6 0.0 -4,-5 0.1271 4 12.093 MINOR ENSMUSG00000007591 Tssk4 ENSMUST00000228395 ENSMUSP00000154783 TRANSLATION protein_coding - - - 338.0 18.0 2.6 8.2 199.2 0.0 -4,-5 0.9325 5 15.0 ALTERNATIVE:1 ENSMUSG00000007591 Tssk4 ENSMUST00000226591 ENSMUSP00000153752 TRANSLATION protein_coding - - - 328.0 18.0 2.6 8.1 216.1 0.0 -4,-5 1.0 5 14.958 PRINCIPAL:4 ENSMUSG00000007591 Tssk4 ENSMUST00000007735 ENSMUSP00000007735 TRANSLATION protein_coding - CCDS56959.1 1 292.0 18.0 2.0 0.1 181.2 0.0 -4,-5 0.0102 4 10.614 MINOR ENSMUSG00000007591 Tssk4 ENSMUST00000164809 ENSMUSP00000127728 TRANSLATION protein_coding - - 1 288.0 18.0 2.33 0.0 182.3 0.0 -4,-5 0.0006 4 11.376 MINOR ENSMUSG00000007591 Tssk4 ENSMUST00000227297 ENSMUSP00000154232 TRANSLATION nonsense_mediated_decay - - - 166.0 14.0 1.6 0.0 104.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000007591 Tssk4 ENSMUST00000226497 ENSMUSP00000154288 TRANSLATION protein_coding - - - 328.0 18.0 2.42375 2.2 188.2 0.0 -4,-5 0.1709 4 12.093 MINOR ENSMUSG00000096405 4930474N05Rik ENSMUST00000177985 ENSMUSP00000136756 TRANSLATION nonsense_mediated_decay - - 1 55.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000096405 4930474N05Rik ENSMUST00000226305 ENSMUSP00000153709 TRANSLATION protein_coding - CCDS49448.1 - 218.0 0.0 2.066 0.1 53.0 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096405 4930474N05Rik ENSMUST00000186722 ENSMUSP00000139748 TRANSLATION nonsense_mediated_decay - - 1 55.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000067995 Gtf2f2 ENSMUST00000088922 ENSMUSP00000086312 TRANSLATION protein_coding - CCDS36981.1 1 249.0 0.0 6.58 28.7 0.0 0.0 -4,-5 1.0 8 10.0 PRINCIPAL:1 ENSMUSG00000021772 Nkiras1 ENSMUST00000022294 ENSMUSP00000022294 TRANSLATION nonsense_mediated_decay - - 1 58.0 8.0 1.0 0.0 0.0 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000021772 Nkiras1 ENSMUST00000152735 - NO_TRANSLATION retained_intron ENSMUSG00000021772 Nkiras1 ENSMUST00000156186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021772 Nkiras1 ENSMUST00000145355 - NO_TRANSLATION retained_intron ENSMUSG00000021772 Nkiras1 ENSMUST00000132374 ENSMUSP00000121496 TRANSLATION protein_coding - CCDS26836.1 1 192.0 18.0 4.0 34.7 93.4 0.0 -3,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000021772 Nkiras1 ENSMUST00000133460 ENSMUSP00000122235 TRANSLATION protein_coding stop - 3 118.0 7.0 2.198 0.0 70.2 0.0 -4,-5 0.0008 3 -2.0 MINOR ENSMUSG00000021772 Nkiras1 ENSMUST00000150209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040997 Abhd4 ENSMUST00000041197 ENSMUSP00000044134 TRANSLATION protein_coding - - 1 342.0 8.0 5.838 9.7 86.2 0.0 -4,-5 0.7056 9 15.944 ALTERNATIVE:1 ENSMUSG00000040997 Abhd4 ENSMUST00000180359 ENSMUSP00000137214 TRANSLATION protein_coding - CCDS56955.1 1 318.0 8.0 5.338 18.9 86.2 0.0 -4,-7 1.0 9 16.998 PRINCIPAL:2 ENSMUSG00000040997 Abhd4 ENSMUST00000239403 ENSMUSP00000159351 TRANSLATION protein_coding - CCDS56954.1 - 355.0 8.0 5.838 6.8 85.7 0.0 -4,-6 0.4363 9 15.296 MINOR ENSMUSG00000040997 Abhd4 ENSMUST00000199068 ENSMUSP00000142423 TRANSLATION protein_coding start - 5 231.0 1.0 2.308 0.0 0.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000040997 Abhd4 ENSMUST00000197802 - NO_TRANSLATION retained_intron ENSMUSG00000040997 Abhd4 ENSMUST00000197605 ENSMUSP00000142722 TRANSLATION protein_coding stop - 3 189.0 7.0 4.03 0.0 86.0 0.0 -4,-7 0.0075 4 -2.0 MINOR ENSMUSG00000040997 Abhd4 ENSMUST00000197807 ENSMUSP00000142607 TRANSLATION nonsense_mediated_decay start - 5 56.0 0.0 0.698 0.0 0.0 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000040997 Abhd4 ENSMUST00000196699 ENSMUSP00000143121 TRANSLATION nonsense_mediated_decay - - 3 85.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040997 Abhd4 ENSMUST00000199338 ENSMUSP00000143600 TRANSLATION protein_coding - - 3 84.0 1.0 0.78 0.0 0.0 0.0 -4,-2 0.0 3 0.75 MINOR ENSMUSG00000032849 Abcc4 ENSMUST00000036554 ENSMUSP00000042186 TRANSLATION protein_coding - CCDS27335.1 1 1325.0 20.0 20.65 9.5 461.7 8.0 -4,-5 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000032849 Abcc4 ENSMUST00000226703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032849 Abcc4 ENSMUST00000228848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032849 Abcc4 ENSMUST00000228691 - NO_TRANSLATION retained_intron ENSMUSG00000032849 Abcc4 ENSMUST00000166646 ENSMUSP00000129677 TRANSLATION protein_coding - CCDS49565.1 1 1250.0 20.0 20.17 2.8 415.7 8.0 -4,-6 0.2969 19 14.916 MINOR ENSMUSG00000032849 Abcc4 ENSMUST00000227480 - NO_TRANSLATION retained_intron ENSMUSG00000022177 Haus4 ENSMUST00000227954 - NO_TRANSLATION retained_intron ENSMUSG00000022177 Haus4 ENSMUST00000022784 ENSMUSP00000022784 TRANSLATION protein_coding - CCDS27092.1 1 363.0 0.0 0.0 11.8 281.3 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000022177 Haus4 ENSMUST00000228043 - NO_TRANSLATION retained_intron ENSMUSG00000022177 Haus4 ENSMUST00000226832 ENSMUSP00000154345 TRANSLATION protein_coding start - - 43.0 0.0 0.0 0.0 54.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022177 Haus4 ENSMUST00000226358 ENSMUSP00000154329 TRANSLATION protein_coding stop - - 214.0 0.0 0.0 0.0 83.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022177 Haus4 ENSMUST00000228883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022177 Haus4 ENSMUST00000226250 - NO_TRANSLATION retained_intron ENSMUSG00000072294 Klf12 ENSMUST00000097079 ENSMUSP00000094844 TRANSLATION protein_coding - CCDS36998.1 1 402.0 12.0 2.0 10.3 68.7 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000072294 Klf12 ENSMUST00000226205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072294 Klf12 ENSMUST00000228612 - NO_TRANSLATION retained_intron ENSMUSG00000072294 Klf12 ENSMUST00000226774 ENSMUSP00000153987 TRANSLATION protein_coding stop - - 153.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000072294 Klf12 ENSMUST00000226544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072294 Klf12 ENSMUST00000228216 ENSMUSP00000153901 TRANSLATION protein_coding - CCDS36998.1 - 402.0 12.0 2.0 10.3 68.7 0.0 -4,-7 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000036422 Pcdh8 ENSMUST00000039568 ENSMUSP00000045333 TRANSLATION protein_coding - CCDS27303.1 1 1070.0 51.0 0.8 8.9 308.7 1.0 2,-2 1.0 12 17.0 PRINCIPAL:4 ENSMUSG00000036422 Pcdh8 ENSMUST00000195034 - NO_TRANSLATION retained_intron ENSMUSG00000036422 Pcdh8 ENSMUST00000194214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036422 Pcdh8 ENSMUST00000195355 ENSMUSP00000141417 TRANSLATION protein_coding - CCDS79349.1 1 973.0 51.0 0.8 7.8 308.7 1.0 2,-2 0.8251 12 16.583 ALTERNATIVE:1 ENSMUSG00000105721 Trav7d-6 ENSMUST00000196756 ENSMUSP00000143226 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.4 0.0 70.3 0.0 4,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000034327 Kctd9 ENSMUST00000078053 ENSMUSP00000077200 TRANSLATION protein_coding - CCDS27230.2 1 339.0 0.0 6.044 5.5 187.4 0.0 -4,-2 0.1983 7 7.524 MINOR ENSMUSG00000034327 Kctd9 ENSMUST00000125212 ENSMUSP00000116807 TRANSLATION protein_coding stop - 5 10.0 0.0 0.264 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034327 Kctd9 ENSMUST00000145542 ENSMUSP00000122956 TRANSLATION protein_coding stop - 5 40.0 0.0 1.264 0.0 27.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034327 Kctd9 ENSMUST00000249619 ENSMUSP00000159828 TRANSLATION protein_coding - - - 429.0 0.0 6.844 0.0 245.1 0.0 -4,-6 0.0331 9 12.0 MINOR ENSMUSG00000034327 Kctd9 ENSMUST00000150768 ENSMUSP00000114489 TRANSLATION protein_coding - CCDS49531.1 5 389.0 0.0 6.844 31.7 245.1 0.0 -4,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000034327 Kctd9 ENSMUST00000152243 ENSMUSP00000120440 TRANSLATION protein_coding - - 2 245.0 0.0 4.914 0.0 107.1 0.0 -4,-6 0.0 6 2.142 MINOR ENSMUSG00000034327 Kctd9 ENSMUST00000156700 ENSMUSP00000115002 TRANSLATION nonsense_mediated_decay - - 2 135.0 0.0 1.0 0.0 67.8 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000076875 Traj58 ENSMUST00000103687 ENSMUSP00000143088 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000048582 Gja3 ENSMUST00000223792 ENSMUSP00000152898 TRANSLATION protein_coding stop - - 23.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048582 Gja3 ENSMUST00000061614 ENSMUSP00000059587 TRANSLATION protein_coding - CCDS27152.1 1 417.0 0.0 1.15 0.4 334.0 0.0 -2,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021911 Parg ENSMUST00000022470 ENSMUSP00000022470 TRANSLATION protein_coding - CCDS36865.1 1 961.0 0.0 13.75 0.0 445.4 0.0 -4,-6 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000021911 Parg ENSMUST00000163350 ENSMUSP00000131566 TRANSLATION protein_coding - - 1 920.0 0.0 12.75 0.0 445.4 0.0 -4,-6 0.0888 21 10.002 MINOR ENSMUSG00000021911 Parg ENSMUST00000167699 ENSMUSP00000130178 TRANSLATION nonsense_mediated_decay - - 3 43.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021911 Parg ENSMUST00000163957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021911 Parg ENSMUST00000171279 ENSMUSP00000128629 TRANSLATION protein_coding stop - 1 186.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000021911 Parg ENSMUST00000170637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021911 Parg ENSMUST00000171871 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021911 Parg ENSMUST00000164137 ENSMUSP00000154704 TRANSLATION protein_coding - - 5 661.0 0.0 5.75 0.0 79.9 0.0 -4,-6 0.0009 14 0.0 MINOR ENSMUSG00000021911 Parg ENSMUST00000170840 ENSMUSP00000132454 TRANSLATION protein_coding - - 5 456.0 0.0 12.0 0.0 445.4 0.0 -4,-5 0.0262 12 8.502 MINOR ENSMUSG00000021911 Parg ENSMUST00000170129 ENSMUSP00000127362 TRANSLATION nonsense_mediated_decay - - 5 95.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000048502 Duxbl1 ENSMUST00000173580 ENSMUSP00000134483 TRANSLATION protein_coding stop - 3 189.0 0.0 2.965 0.0 119.8 0.0 -4,-7 0.019 - -2.0 MINOR ENSMUSG00000048502 Duxbl1 ENSMUST00000174383 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048502 Duxbl1 ENSMUST00000172667 ENSMUSP00000133570 TRANSLATION protein_coding - - 5 201.0 0.0 2.565 0.0 92.1 0.0 -4,-7 0.0052 - 9.528 MINOR ENSMUSG00000048502 Duxbl1 ENSMUST00000173155 ENSMUSP00000134001 TRANSLATION protein_coding stop - 3 76.0 0.0 1.365 0.0 54.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000048502 Duxbl1 ENSMUST00000049793 ENSMUSP00000056056 TRANSLATION protein_coding - CCDS26878.1 1 350.0 0.0 2.965 0.1 119.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048502 Duxbl1 ENSMUST00000172465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040717 Il17rd ENSMUST00000225146 ENSMUSP00000153543 TRANSLATION protein_coding - - - 594.0 0.0 0.4 1.0 213.1 2.0 -4,-5 0.0933 - 6.0 MINOR ENSMUSG00000040717 Il17rd ENSMUST00000223942 ENSMUSP00000153108 TRANSLATION protein_coding - - - 167.0 0.0 0.0 0.0 171.0 0.0 1,-4 0.0012 - 0.0 MINOR ENSMUSG00000040717 Il17rd ENSMUST00000226105 ENSMUSP00000153140 TRANSLATION protein_coding - - - 562.0 0.0 0.4 0.0 213.1 2.0 -4,-5 0.0305 - 6.0 MINOR ENSMUSG00000040717 Il17rd ENSMUST00000035336 ENSMUSP00000036076 TRANSLATION protein_coding - CCDS26885.1 1 738.0 0.0 0.4 7.1 398.7 2.0 1,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040717 Il17rd ENSMUST00000225829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040770 Il25 ENSMUST00000037863 ENSMUSP00000039641 TRANSLATION protein_coding - CCDS36926.1 1 169.0 0.0 0.4 8.7 72.7 0.0 0,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052334 1700024B05Rik ENSMUST00000064162 ENSMUSP00000064211 TRANSLATION protein_coding - - 1 167.0 0.0 3.0 0.0 82.3 0.0 -4,-5 0.7365 - 12.0 PRINCIPAL:1 ENSMUSG00000096001 Gpr15lg ENSMUST00000191317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096001 Gpr15lg ENSMUST00000179488 ENSMUSP00000136426 TRANSLATION protein_coding - CCDS56949.1 1 78.0 0.0 0.0 1.9 105.9 0.0 3,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000095689 Trav12d-1 ENSMUST00000181360 ENSMUSP00000137870 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.1 0.0 49.3 0.0 4,-1 0.8234 - -2.0 PRINCIPAL:1 ENSMUSG00000039357 Fut11 ENSMUST00000225804 - NO_TRANSLATION retained_intron ENSMUSG00000039357 Fut11 ENSMUST00000048016 ENSMUSP00000040370 TRANSLATION protein_coding - CCDS26851.1 1 489.0 9.0 3.0 5.3 158.6 0.0 1,-2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000094021 Gm3685 ENSMUST00000249455 ENSMUSP00000159762 TRANSLATION protein_coding - - - 276.0 0.0 4.0 0.0 72.6 0.0 -4,-5 0.7383 - 12.0 PRINCIPAL:1 ENSMUSG00000094021 Gm3685 ENSMUST00000169215 ENSMUSP00000126624 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 72.6 0.0 -4,-5 0.0025 - 10.002 MINOR ENSMUSG00000094021 Gm3685 ENSMUST00000249457 ENSMUSP00000159764 TRANSLATION nonsense_mediated_decay - - - 107.0 0.0 1.0 0.0 41.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000094021 Gm3685 ENSMUST00000249456 ENSMUSP00000159763 TRANSLATION protein_coding - - - 160.0 0.0 2.0 0.0 39.0 0.0 -4,-5 0.0 - 5.22 MINOR ENSMUSG00000021843 Ktn1 ENSMUST00000186761 ENSMUSP00000139521 TRANSLATION protein_coding - CCDS84125.1 5 1247.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.4714 37 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000190857 - NO_TRANSLATION retained_intron ENSMUSG00000021843 Ktn1 ENSMUST00000188330 ENSMUSP00000140845 TRANSLATION protein_coding - CCDS84133.1 5 1224.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.4618 37 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000186466 ENSMUSP00000140523 TRANSLATION protein_coding stop - 3 176.0 0.0 0.0 0.0 29.2 1.0 -3,-5 0.0382 1 -2.0 MINOR ENSMUSG00000021843 Ktn1 ENSMUST00000022391 ENSMUSP00000022391 TRANSLATION protein_coding - CCDS36900.1 1 1327.0 0.0 0.0 0.0 32.4 1.0 -3,-5 1.0 39 0.0 PRINCIPAL:2 ENSMUSG00000021843 Ktn1 ENSMUST00000190252 ENSMUSP00000140011 TRANSLATION protein_coding - CCDS79305.1 1 1270.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.515 37 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000189533 ENSMUSP00000140142 TRANSLATION protein_coding - CCDS84132.1 5 1247.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.4714 37 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000191511 ENSMUSP00000139946 TRANSLATION protein_coding - - 5 1252.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.2823 36 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000188049 - NO_TRANSLATION retained_intron ENSMUSG00000021843 Ktn1 ENSMUST00000186700 - NO_TRANSLATION retained_intron ENSMUSG00000021843 Ktn1 ENSMUST00000189986 ENSMUSP00000139970 TRANSLATION nonsense_mediated_decay - - 5 178.0 0.0 0.0 0.0 29.2 1.0 -3,-5 0.0382 1 -2.0 MINOR ENSMUSG00000021843 Ktn1 ENSMUST00000188263 - NO_TRANSLATION retained_intron ENSMUSG00000021843 Ktn1 ENSMUST00000187839 ENSMUSP00000140324 TRANSLATION protein_coding - CCDS36900.1 5 1327.0 0.0 0.0 0.0 32.4 1.0 -3,-5 1.0 39 0.0 PRINCIPAL:2 ENSMUSG00000021843 Ktn1 ENSMUST00000187262 ENSMUSP00000140206 TRANSLATION protein_coding - CCDS84123.1 5 1252.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.4835 36 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000190535 ENSMUSP00000139952 TRANSLATION protein_coding - CCDS84126.1 5 1304.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.61 39 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000191018 ENSMUSP00000139585 TRANSLATION protein_coding - - 5 1280.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.3016 38 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000190999 ENSMUSP00000139673 TRANSLATION protein_coding - - 5 1275.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.2977 39 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000190182 ENSMUSP00000140301 TRANSLATION protein_coding - CCDS84124.1 5 1275.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.5218 39 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000186627 ENSMUSP00000140873 TRANSLATION protein_coding - - 5 1228.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.2626 38 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000191446 ENSMUSP00000140748 TRANSLATION protein_coding - - 5 1275.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.2977 36 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000185343 ENSMUSP00000140186 TRANSLATION protein_coding - CCDS84130.1 5 1229.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.4641 36 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000187039 ENSMUSP00000140202 TRANSLATION protein_coding - CCDS84135.1 5 1223.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.4618 36 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000185940 ENSMUSP00000139625 TRANSLATION protein_coding - CCDS84135.1 5 1223.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.4618 36 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000189101 ENSMUSP00000140178 TRANSLATION protein_coding - CCDS84136.1 5 1200.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.4578 36 0.0 ALTERNATIVE:2 ENSMUSG00000021843 Ktn1 ENSMUST00000190164 - NO_TRANSLATION retained_intron ENSMUSG00000021843 Ktn1 ENSMUST00000188553 ENSMUSP00000140865 TRANSLATION protein_coding - CCDS84127.1 5 1253.0 0.0 0.0 0.0 32.4 1.0 -3,-5 0.4835 37 0.0 ALTERNATIVE:2 ENSMUSG00000045211 Nudt18 ENSMUST00000089049 ENSMUSP00000086450 TRANSLATION protein_coding - CCDS27258.1 1 323.0 6.0 4.0 10.7 68.1 0.0 -3,-6 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000045211 Nudt18 ENSMUST00000228554 ENSMUSP00000154027 TRANSLATION protein_coding - - - 91.0 0.0 1.0 0.0 0.0 0.0 -3,-6 0.0 1 0.0 MINOR ENSMUSG00000045211 Nudt18 ENSMUST00000228768 ENSMUSP00000154258 TRANSLATION protein_coding - - - 265.0 6.0 3.0 0.1 52.6 0.0 -4,-5 0.027 7 14.634 MINOR ENSMUSG00000063506 Arhgap22 ENSMUST00000137590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063506 Arhgap22 ENSMUST00000132659 - NO_TRANSLATION retained_intron ENSMUSG00000063506 Arhgap22 ENSMUST00000111955 ENSMUSP00000107586 TRANSLATION protein_coding - - 1 537.0 1.0 2.06 0.1 69.1 0.0 -4,-7 0.0016 8 0.906 MINOR ENSMUSG00000063506 Arhgap22 ENSMUST00000131086 ENSMUSP00000154002 TRANSLATION protein_coding stop - 2 132.0 9.0 1.825 0.0 63.7 0.0 -4,-1 0.0015 2 -2.0 MINOR ENSMUSG00000063506 Arhgap22 ENSMUST00000140711 ENSMUSP00000154670 TRANSLATION protein_coding stop - 3 147.0 0.0 1.4 0.0 89.5 0.0 -2,2 0.0 2 -2.0 MINOR ENSMUSG00000063506 Arhgap22 ENSMUST00000165792 ENSMUSP00000153801 TRANSLATION protein_coding stop - 2 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063506 Arhgap22 ENSMUST00000111956 ENSMUSP00000107587 TRANSLATION protein_coding - CCDS26926.2 1 702.0 9.0 4.94 0.1 241.2 0.0 -4,0 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000063506 Arhgap22 ENSMUST00000140166 - NO_TRANSLATION retained_intron ENSMUSG00000025545 Clybl ENSMUST00000026625 ENSMUSP00000026625 TRANSLATION protein_coding - CCDS27346.1 1 338.0 7.0 7.0 1.1 165.5 0.0 -4,0 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000025545 Clybl ENSMUST00000226136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094413 Trav15n-1 ENSMUST00000197433 ENSMUSP00000143704 TRANSLATION TR_V_gene stop - - 117.0 0.0 1.0 0.0 53.0 0.0 1,-2 0.827 - -2.0 PRINCIPAL:1 ENSMUSG00000021819 Zswim8 ENSMUST00000223782 - NO_TRANSLATION retained_intron ENSMUSG00000021819 Zswim8 ENSMUST00000223561 - NO_TRANSLATION retained_intron ENSMUSG00000021819 Zswim8 ENSMUST00000223840 ENSMUSP00000153027 TRANSLATION protein_coding - - - 1798.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.2509 18 0.033 MINOR ENSMUSG00000021819 Zswim8 ENSMUST00000225332 - NO_TRANSLATION retained_intron ENSMUSG00000021819 Zswim8 ENSMUST00000224751 ENSMUSP00000153285 TRANSLATION protein_coding - - - 1825.0 0.0 0.0 2.3 0.0 0.0 -4,-5 0.3294 18 0.438 MINOR ENSMUSG00000021819 Zswim8 ENSMUST00000225187 - NO_TRANSLATION retained_intron ENSMUSG00000021819 Zswim8 ENSMUST00000225743 - NO_TRANSLATION retained_intron ENSMUSG00000021819 Zswim8 ENSMUST00000225010 - NO_TRANSLATION retained_intron ENSMUSG00000021819 Zswim8 ENSMUST00000224485 - NO_TRANSLATION retained_intron ENSMUSG00000021819 Zswim8 ENSMUST00000225715 - NO_TRANSLATION retained_intron ENSMUSG00000021819 Zswim8 ENSMUST00000022358 ENSMUSP00000022358 TRANSLATION protein_coding - CCDS36820.1 1 1832.0 0.0 0.0 9.9 0.0 0.0 -4,-5 1.0 18 3.0 PRINCIPAL:1 ENSMUSG00000021819 Zswim8 ENSMUST00000224129 ENSMUSP00000153700 TRANSLATION nonsense_mediated_decay start - - 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0233 - -2.0 MINOR ENSMUSG00000021819 Zswim8 ENSMUST00000224165 - NO_TRANSLATION retained_intron ENSMUSG00000021819 Zswim8 ENSMUST00000225911 ENSMUSP00000153144 TRANSLATION protein_coding start - - 360.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0342 1 -2.0 MINOR ENSMUSG00000041445 Mmrn2 ENSMUST00000111908 ENSMUSP00000107539 TRANSLATION protein_coding - CCDS36876.1 1 943.0 0.0 0.5 0.0 134.4 0.0 4,-1 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000041445 Mmrn2 ENSMUST00000227130 ENSMUSP00000153972 TRANSLATION protein_coding start/stop - - 173.0 0.0 0.0 0.0 31.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000034997 Htr2a ENSMUST00000036653 ENSMUSP00000047774 TRANSLATION protein_coding - CCDS27275.1 1 471.0 0.0 2.4 14.5 231.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000036282 Naa30 ENSMUST00000153488 ENSMUSP00000121679 TRANSLATION protein_coding - CCDS84137.1 1 364.0 23.0 3.83 0.0 61.0 0.0 -4,-5 0.4534 9 12.666 ALTERNATIVE:2 ENSMUSG00000036282 Naa30 ENSMUST00000136995 ENSMUSP00000119775 TRANSLATION protein_coding start - 3 34.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036282 Naa30 ENSMUST00000138478 - NO_TRANSLATION retained_intron ENSMUSG00000036282 Naa30 ENSMUST00000037362 ENSMUSP00000041450 TRANSLATION protein_coding - - 5 366.0 23.0 3.55445 0.0 62.2 0.0 -4,-5 0.6829 9 13.448 PRINCIPAL:4 ENSMUSG00000036282 Naa30 ENSMUST00000134984 - NO_TRANSLATION retained_intron ENSMUSG00000076846 Trav13-2 ENSMUST00000103658 ENSMUSP00000100435 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.0 0.0 56.2 0.0 4,-1 0.8251 - -2.0 PRINCIPAL:1 ENSMUSG00000049235 Gm7324 ENSMUST00000228507 ENSMUSP00000154111 TRANSLATION protein_coding stop - - 30.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049235 Gm7324 ENSMUST00000094051 ENSMUSP00000154633 TRANSLATION protein_coding - - - 388.0 0.0 1.2 1.5 160.2 0.0 -4,-5 0.7649 - 13.0 PRINCIPAL:1 ENSMUSG00000037780 Mbl1 ENSMUST00000225792 ENSMUSP00000153147 TRANSLATION protein_coding - CCDS26961.1 - 239.0 11.0 1.75 2.2 95.9 0.0 3,-2 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000037780 Mbl1 ENSMUST00000047095 ENSMUSP00000048765 TRANSLATION nonsense_mediated_decay - - 1 91.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0 1 -2.0 MINOR ENSMUSG00000068015 Lrch1 ENSMUST00000228252 ENSMUSP00000154004 TRANSLATION protein_coding - - - 682.0 0.0 5.2175 0.4 112.2 0.0 -4,-7 0.0737 15 8.0 ALTERNATIVE:2 ENSMUSG00000068015 Lrch1 ENSMUST00000226799 ENSMUSP00000159358 TRANSLATION protein_coding - - - 277.0 0.0 1.25 0.0 45.6 0.0 -4,-5 0.0 5 0.572 MINOR ENSMUSG00000068015 Lrch1 ENSMUST00000229311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068015 Lrch1 ENSMUST00000230381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068015 Lrch1 ENSMUST00000230218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068015 Lrch1 ENSMUST00000227433 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068015 Lrch1 ENSMUST00000088970 ENSMUSP00000086363 TRANSLATION protein_coding - CCDS36976.1 1 709.0 0.0 5.2175 0.1 112.2 0.0 -4,-7 1.0 15 8.0 PRINCIPAL:2 ENSMUSG00000068015 Lrch1 ENSMUST00000228134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094468 Trav6-4 ENSMUST00000180711 ENSMUSP00000137807 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.1 0.0 37.2 0.0 4,-1 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000079389 Gm3149 ENSMUST00000112779 ENSMUSP00000108399 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 68.3 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000079389 Gm3149 ENSMUST00000171810 ENSMUSP00000126595 TRANSLATION protein_coding - - 5 257.0 0.0 4.0 0.0 68.3 0.0 -4,-5 0.7288 - 12.0 PRINCIPAL:1 ENSMUSG00000076800 Trav6n-5 ENSMUST00000103611 ENSMUSP00000100388 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.066 0.0 52.5 0.0 1,-2 0.824 - -2.0 PRINCIPAL:1 ENSMUSG00000095756 Trav6d-7 ENSMUST00000178650 ENSMUSP00000137604 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 45.3 0.0 2,-1 0.8254 - -2.0 PRINCIPAL:1 ENSMUSG00000076762 Trav6-1 ENSMUST00000103571 ENSMUSP00000100348 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 36.0 0.0 3,-1 0.8224 - -2.0 PRINCIPAL:1 ENSMUSG00000044350 Lacc1 ENSMUST00000139809 - NO_TRANSLATION retained_intron ENSMUSG00000044350 Lacc1 ENSMUST00000142300 ENSMUSP00000135628 TRANSLATION protein_coding stop - 3 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000044350 Lacc1 ENSMUST00000062789 ENSMUSP00000059173 TRANSLATION protein_coding - CCDS27287.1 1 430.0 0.0 1.78 12.5 193.1 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000021831 Ero1a ENSMUST00000022378 ENSMUSP00000022378 TRANSLATION protein_coding - CCDS36893.1 1 464.0 19.0 7.533 9.1 417.7 0.0 4,-1 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000021831 Ero1a ENSMUST00000227315 ENSMUSP00000154411 TRANSLATION nonsense_mediated_decay start - - 64.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000021831 Ero1a ENSMUST00000228836 - NO_TRANSLATION retained_intron ENSMUSG00000021831 Ero1a ENSMUST00000227147 ENSMUSP00000153844 TRANSLATION protein_coding start/stop - - 229.0 11.0 4.698 0.0 234.7 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000021831 Ero1a ENSMUST00000228777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021831 Ero1a ENSMUST00000228564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068506 Gm5800 ENSMUST00000095916 ENSMUSP00000093605 TRANSLATION protein_coding - CCDS27042.1 1 186.0 0.0 3.15 0.0 91.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021996 Esd ENSMUST00000176188 - NO_TRANSLATION retained_intron ENSMUSG00000021996 Esd ENSMUST00000177283 ENSMUSP00000135063 TRANSLATION protein_coding stop - 5 247.0 4.0 6.83 0.0 219.0 0.0 -4,-2 0.0024 11 -2.0 MINOR ENSMUSG00000021996 Esd ENSMUST00000022573 ENSMUSP00000022573 TRANSLATION protein_coding - CCDS36975.1 1 282.0 6.0 7.99 36.9 239.5 0.0 -4,-2 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000021996 Esd ENSMUST00000177181 ENSMUSP00000135035 TRANSLATION protein_coding - - 5 265.0 5.0 7.292 0.1 221.9 0.0 -4,-2 0.0035 11 14.544 MINOR ENSMUSG00000021996 Esd ENSMUST00000177445 - NO_TRANSLATION retained_intron ENSMUSG00000021996 Esd ENSMUST00000175887 ENSMUSP00000135244 TRANSLATION protein_coding - - 5 249.0 6.0 6.99 0.0 186.5 0.0 -4,-2 0.0011 8 12.822 MINOR ENSMUSG00000021996 Esd ENSMUST00000176726 ENSMUSP00000135708 TRANSLATION protein_coding start - 5 105.0 2.0 2.83 0.0 61.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021996 Esd ENSMUST00000175712 ENSMUSP00000134932 TRANSLATION protein_coding stop - 3 135.0 0.0 3.5 0.0 96.2 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000021996 Esd ENSMUST00000176957 ENSMUSP00000135394 TRANSLATION protein_coding - CCDS70603.1 1 295.0 6.0 7.99 0.0 239.5 0.0 -4,0 0.2002 12 18.0 MINOR ENSMUSG00000021996 Esd ENSMUST00000177137 ENSMUSP00000135818 TRANSLATION protein_coding - - 5 259.0 4.0 7.16 0.0 222.4 0.0 -4,-2 0.0027 11 13.314 MINOR ENSMUSG00000021996 Esd ENSMUST00000176484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094157 Gm7995 ENSMUST00000249540 ENSMUSP00000159784 TRANSLATION nonsense_mediated_decay - - - 134.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000094157 Gm7995 ENSMUST00000249539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094157 Gm7995 ENSMUST00000249538 ENSMUSP00000159783 TRANSLATION protein_coding - - - 177.0 0.0 3.0 0.0 83.8 0.0 -4,-5 0.7365 - 12.0 PRINCIPAL:1 ENSMUSG00000094157 Gm7995 ENSMUST00000249537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014496 Ankrd28 ENSMUST00000227937 - NO_TRANSLATION retained_intron ENSMUSG00000014496 Ankrd28 ENSMUST00000014640 ENSMUSP00000014640 TRANSLATION protein_coding - CCDS36858.1 1 1053.0 0.0 16.9385 31.3 544.4 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000014496 Ankrd28 ENSMUST00000227307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014496 Ankrd28 ENSMUST00000227083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014496 Ankrd28 ENSMUST00000226963 - NO_TRANSLATION retained_intron ENSMUSG00000014496 Ankrd28 ENSMUST00000228037 ENSMUSP00000154667 TRANSLATION protein_coding stop - - 185.0 0.0 4.448 0.0 133.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000014496 Ankrd28 ENSMUST00000227089 ENSMUSP00000154197 TRANSLATION protein_coding - - - 899.0 0.0 13.7905 7.5 476.1 0.0 -4,-7 0.2062 14 2.762 MINOR ENSMUSG00000014496 Ankrd28 ENSMUST00000227613 - NO_TRANSLATION retained_intron ENSMUSG00000014496 Ankrd28 ENSMUST00000227863 ENSMUSP00000153992 TRANSLATION protein_coding - - - 1083.0 0.0 16.7405 24.8 502.0 0.0 -4,-5 0.7433 16 12.2 MINOR ENSMUSG00000014496 Ankrd28 ENSMUST00000227878 ENSMUSP00000154187 TRANSLATION nonsense_mediated_decay start - - 38.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021993 Mipep ENSMUST00000225506 ENSMUSP00000153374 TRANSLATION nonsense_mediated_decay - - - 568.0 4.0 4.92 0.0 318.8 0.0 -4,0 0.0 11 -2.0 MINOR ENSMUSG00000021993 Mipep ENSMUST00000224635 ENSMUSP00000153502 TRANSLATION nonsense_mediated_decay - CCDS49517.1 - 711.0 5.0 6.875 2.4 476.1 0.0 -4,0 1.0 - -2.0 MINOR ENSMUSG00000021993 Mipep ENSMUST00000225043 ENSMUSP00000153184 TRANSLATION protein_coding - - - 210.0 0.0 1.215 0.0 0.0 0.0 -4,0 0.0004 2 0.0 MINOR ENSMUSG00000021993 Mipep ENSMUST00000063562 ENSMUSP00000069840 TRANSLATION protein_coding - CCDS49517.1 1 711.0 5.0 6.875 2.4 476.1 0.0 -4,0 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000021993 Mipep ENSMUST00000223709 - NO_TRANSLATION retained_intron ENSMUSG00000058351 Uqcc5 ENSMUST00000203261 ENSMUSP00000145018 TRANSLATION protein_coding - CCDS84104.1 1 102.0 0.0 0.0 0.0 85.4 2.0 -4,0 0.0309 - 4.104 MINOR ENSMUSG00000058351 Uqcc5 ENSMUST00000049732 ENSMUSP00000050634 TRANSLATION protein_coding - CCDS84105.1 2 80.0 0.0 0.0 9.8 117.0 2.0 -4,0 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000058351 Uqcc5 ENSMUST00000090205 ENSMUSP00000087673 TRANSLATION protein_coding - - 2 60.0 0.0 0.0 0.0 89.0 2.0 -4,0 0.003 - 4.32 MINOR ENSMUSG00000058351 Uqcc5 ENSMUST00000064032 ENSMUSP00000067418 TRANSLATION protein_coding - CCDS84106.1 3 86.0 0.0 0.0 0.0 117.0 2.0 -4,0 0.1264 2 6.0 MINOR ENSMUSG00000007817 Zmiz1 ENSMUST00000007961 ENSMUSP00000007961 TRANSLATION protein_coding - CCDS79280.1 1 1066.0 4.0 5.535 8.7 80.9 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:4 ENSMUSG00000007817 Zmiz1 ENSMUST00000162546 - NO_TRANSLATION retained_intron ENSMUSG00000007817 Zmiz1 ENSMUST00000160190 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007817 Zmiz1 ENSMUST00000161766 - NO_TRANSLATION retained_intron ENSMUSG00000007817 Zmiz1 ENSMUST00000160229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007817 Zmiz1 ENSMUST00000159766 - NO_TRANSLATION retained_intron ENSMUSG00000007817 Zmiz1 ENSMUST00000160680 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007817 Zmiz1 ENSMUST00000162645 ENSMUSP00000124863 TRANSLATION protein_coding - CCDS26873.1 1 1072.0 4.0 5.535 7.8 80.9 0.0 -4,-6 0.9332 4 14.649 ALTERNATIVE:1 ENSMUSG00000015966 Il17rb ENSMUST00000016110 ENSMUSP00000016110 TRANSLATION protein_coding - CCDS36845.1 1 499.0 2.0 2.5419 0.1 271.3 1.0 1,-4 1.0 1 10.0 PRINCIPAL:2 ENSMUSG00000015966 Il17rb ENSMUST00000122205 ENSMUSP00000113686 TRANSLATION protein_coding - - 5 499.0 2.0 2.5419 0.1 268.1 1.0 1,-4 0.5629 1 10.0 ALTERNATIVE:2 ENSMUSG00000015966 Il17rb ENSMUST00000135888 ENSMUSP00000121407 TRANSLATION nonsense_mediated_decay - - 5 140.0 4.0 0.9264 0.0 39.5 0.0 1,-4 0.0027 1 -2.0 MINOR ENSMUSG00000015966 Il17rb ENSMUST00000223643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015966 Il17rb ENSMUST00000225746 - NO_TRANSLATION retained_intron ENSMUSG00000015966 Il17rb ENSMUST00000136726 ENSMUSP00000117802 TRANSLATION nonsense_mediated_decay - - 5 212.0 2.0 1.8764 0.0 76.5 0.0 1,-4 0.0013 1 -2.0 MINOR ENSMUSG00000090505 Gm3486 ENSMUST00000169361 ENSMUSP00000131656 TRANSLATION protein_coding start - 1 199.0 0.0 3.15 0.0 67.1 0.0 -4,-6 0.7377 - -2.0 PRINCIPAL:1 ENSMUSG00000094715 Gm17078 ENSMUST00000167617 ENSMUSP00000137655 TRANSLATION protein_coding - - 5 211.0 0.0 3.0 0.0 89.4 0.0 -4,-7 0.7399 - 12.0 PRINCIPAL:1 ENSMUSG00000061068 Mcpt4 ENSMUST00000043249 ENSMUSP00000038103 TRANSLATION protein_coding - CCDS27140.1 1 246.0 7.0 4.0 0.1 210.7 0.0 3,-2 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000098773 Gm27179 ENSMUST00000184652 ENSMUSP00000139267 TRANSLATION protein_coding - - 1 618.0 0.0 0.0 0.4 0.0 0.0 4,-1 0.6631 - 0.0 PRINCIPAL:1 ENSMUSG00000093825 Or4l1 ENSMUST00000164157 ENSMUSP00000129254 TRANSLATION protein_coding - CCDS26999.1 - 309.0 0.0 1.0 9.4 148.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093825 Or4l1 ENSMUST00000206058 ENSMUSP00000145863 TRANSLATION protein_coding - CCDS26999.1 3 309.0 0.0 1.0 9.4 148.7 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046753 Ccdc66 ENSMUST00000050480 ENSMUSP00000052546 TRANSLATION protein_coding - - 1 779.0 0.0 0.0 0.0 151.1 0.0 -4,-5 0.7778 3 2.0 PRINCIPAL:2 ENSMUSG00000046753 Ccdc66 ENSMUST00000224837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046753 Ccdc66 ENSMUST00000223689 ENSMUSP00000153023 TRANSLATION protein_coding - CCDS36843.1 - 935.0 0.0 0.0 0.0 151.1 0.0 -4,-5 0.3837 5 2.0 ALTERNATIVE:2 ENSMUSG00000076861 Trav18 ENSMUST00000103673 ENSMUSP00000100450 TRANSLATION TR_V_gene stop - - 109.0 0.0 1.1 0.0 47.5 0.0 2,-2 0.8223 - -2.0 PRINCIPAL:1 ENSMUSG00000022055 Nefl ENSMUST00000022639 ENSMUSP00000022639 TRANSLATION protein_coding - CCDS27232.1 1 543.0 0.0 1.066 0.0 389.4 0.0 -4,-7 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000094023 Trav7d-4 ENSMUST00000178768 ENSMUSP00000136110 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.5 0.0 68.6 0.0 4,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000007989 Fzd3 ENSMUST00000127272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007989 Fzd3 ENSMUST00000131309 ENSMUSP00000115325 TRANSLATION protein_coding - CCDS27212.1 1 666.0 0.0 2.3 23.7 505.0 0.0 1,-3 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000076884 Traj46 ENSMUST00000103696 ENSMUSP00000143666 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000076863 Trav21-dv12 ENSMUST00000180938 ENSMUSP00000137998 TRANSLATION TR_V_gene stop - - 109.0 0.0 1.0 0.0 37.8 0.0 1,-2 0.8237 - -2.0 PRINCIPAL:1 ENSMUSG00000105533 Trav7d-2 ENSMUST00000200127 ENSMUSP00000143514 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.4 0.0 65.0 0.0 3,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000015441 Gzmf ENSMUST00000022757 ENSMUSP00000022757 TRANSLATION protein_coding - CCDS36936.1 1 248.0 11.0 4.0 3.5 209.1 0.0 3,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000034450 Gulo ENSMUST00000059970 ENSMUSP00000060912 TRANSLATION protein_coding - CCDS36958.1 1 440.0 36.0 10.75 20.2 414.6 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000021900 Btd ENSMUST00000128014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021900 Btd ENSMUST00000090147 ENSMUSP00000087608 TRANSLATION protein_coding - CCDS36857.1 1 529.0 0.0 1.9 2.2 53.2 0.0 1,-4 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000076896 Traj33 ENSMUST00000103708 ENSMUSP00000142562 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000021906 Oxnad1 ENSMUST00000170519 ENSMUSP00000132560 TRANSLATION nonsense_mediated_decay start - 3 86.0 13.0 2.25 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021906 Oxnad1 ENSMUST00000164396 - NO_TRANSLATION retained_intron ENSMUSG00000021906 Oxnad1 ENSMUST00000022462 ENSMUSP00000022462 TRANSLATION protein_coding - CCDS26918.1 1 311.0 32.0 8.08 0.0 53.4 0.0 -2,1 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000021906 Oxnad1 ENSMUST00000170600 ENSMUSP00000130998 TRANSLATION protein_coding stop - 3 160.0 15.0 4.0 0.0 0.0 0.0 -2,1 0.0 3 -2.0 MINOR ENSMUSG00000021906 Oxnad1 ENSMUST00000171598 ENSMUSP00000132162 TRANSLATION protein_coding stop - 3 115.0 5.0 2.5 0.0 0.0 0.0 -2,1 0.0007 2 -2.0 MINOR ENSMUSG00000021906 Oxnad1 ENSMUST00000166810 ENSMUSP00000130215 TRANSLATION protein_coding stop - 3 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021906 Oxnad1 ENSMUST00000168986 ENSMUSP00000126372 TRANSLATION protein_coding stop - 1 141.0 13.0 3.5 0.0 0.0 0.0 -2,1 0.0007 2 -2.0 MINOR ENSMUSG00000021906 Oxnad1 ENSMUST00000171849 ENSMUSP00000127884 TRANSLATION protein_coding start - 5 105.0 12.0 1.5 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021906 Oxnad1 ENSMUST00000164868 ENSMUSP00000125791 TRANSLATION nonsense_mediated_decay - - 1 157.0 13.0 3.5 0.1 0.0 0.0 -2,1 0.0007 3 -2.0 MINOR ENSMUSG00000021906 Oxnad1 ENSMUST00000165523 ENSMUSP00000129545 TRANSLATION nonsense_mediated_decay - - 2 61.0 0.0 0.75 0.0 0.0 0.0 -2,2 0.0007 - -2.0 MINOR ENSMUSG00000021906 Oxnad1 ENSMUST00000227845 ENSMUSP00000153925 TRANSLATION nonsense_mediated_decay - - - 76.0 0.0 0.75 0.0 0.0 0.0 -2,2 0.0007 - -2.0 MINOR ENSMUSG00000021906 Oxnad1 ENSMUST00000169078 - NO_TRANSLATION retained_intron ENSMUSG00000021906 Oxnad1 ENSMUST00000169649 ENSMUSP00000126731 TRANSLATION protein_coding stop - 3 71.0 4.0 1.0 0.0 0.0 0.0 -2,0 0.0007 - -2.0 MINOR ENSMUSG00000015812 Gnrh1 ENSMUST00000223929 ENSMUSP00000153349 TRANSLATION protein_coding - - - 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0074 - 0.0 MINOR ENSMUSG00000015812 Gnrh1 ENSMUST00000111095 ENSMUSP00000106724 TRANSLATION protein_coding - CCDS27231.1 1 90.0 0.0 0.6 4.1 23.1 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000015812 Gnrh1 ENSMUST00000223951 ENSMUSP00000153071 TRANSLATION protein_coding - CCDS27231.1 - 90.0 0.0 0.6 4.1 23.1 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040640 Erc2 ENSMUST00000210135 ENSMUSP00000147981 TRANSLATION protein_coding - CCDS84102.1 1 977.0 7.0 0.0 0.0 1269.0 0.0 -4,-2 0.3537 23 10.854 MINOR ENSMUSG00000040640 Erc2 ENSMUST00000210327 ENSMUSP00000148076 TRANSLATION non_stop_decay stop - 5 251.0 7.0 0.0 0.0 130.5 0.0 -4,-2 0.001 4 -2.0 MINOR ENSMUSG00000040640 Erc2 ENSMUST00000209752 - NO_TRANSLATION retained_intron ENSMUSG00000040640 Erc2 ENSMUST00000211684 ENSMUSP00000148033 TRANSLATION protein_coding - - 5 51.0 0.0 0.0 0.0 31.3 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000040640 Erc2 ENSMUST00000211627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040640 Erc2 ENSMUST00000224045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040640 Erc2 ENSMUST00000211636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040640 Erc2 ENSMUST00000211087 ENSMUSP00000147814 TRANSLATION protein_coding stop - 5 347.0 7.0 0.0 0.0 316.8 0.0 -4,-2 0.0013 6 -2.0 MINOR ENSMUSG00000040640 Erc2 ENSMUST00000210524 - NO_TRANSLATION retained_intron ENSMUSG00000040640 Erc2 ENSMUST00000210924 ENSMUSP00000147744 TRANSLATION protein_coding - - 1 623.0 0.0 0.0 0.0 945.0 0.0 -4,-7 0.0615 19 0.0 MINOR ENSMUSG00000040640 Erc2 ENSMUST00000209800 - NO_TRANSLATION retained_intron ENSMUSG00000040640 Erc2 ENSMUST00000209476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040640 Erc2 ENSMUST00000090302 ENSMUSP00000087773 TRANSLATION protein_coding - CCDS26887.1 1 1002.0 7.0 0.0 0.0 1278.4 0.0 -4,-2 0.3002 23 11.418 MINOR ENSMUSG00000040640 Erc2 ENSMUST00000211145 ENSMUSP00000147886 TRANSLATION protein_coding - - 1 957.0 7.0 0.0 6.4 1288.1 0.0 -4,-2 1.0 24 14.0 PRINCIPAL:1 ENSMUSG00000022096 Hr ENSMUST00000161468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022096 Hr ENSMUST00000159959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022096 Hr ENSMUST00000022691 ENSMUSP00000022691 TRANSLATION protein_coding - CCDS27257.1 1 1182.0 0.0 3.95 5.4 31.5 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000022096 Hr ENSMUST00000163060 ENSMUSP00000124042 TRANSLATION protein_coding - - 5 1211.0 0.0 3.95 0.0 31.5 0.0 -4,-6 0.2456 1 12.0 MINOR ENSMUSG00000022096 Hr ENSMUST00000161069 ENSMUSP00000124816 TRANSLATION protein_coding - CCDS27257.1 1 1182.0 0.0 3.95 5.4 31.5 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000021773 Comtd1 ENSMUST00000124549 ENSMUSP00000119330 TRANSLATION protein_coding - CCDS26868.1 1 262.0 15.0 6.0 9.8 0.0 0.0 -2,-3 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000021773 Comtd1 ENSMUST00000177527 ENSMUSP00000134830 TRANSLATION protein_coding - - 5 200.0 15.0 5.0 0.0 0.0 0.0 -4,-6 0.0098 3 10.002 MINOR ENSMUSG00000021773 Comtd1 ENSMUST00000152905 - NO_TRANSLATION retained_intron ENSMUSG00000021773 Comtd1 ENSMUST00000022295 - NO_TRANSLATION retained_intron ENSMUSG00000076881 Traj50 ENSMUST00000103693 ENSMUSP00000142740 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.6648 - -2.0 PRINCIPAL:1 ENSMUSG00000021913 Ogdhl ENSMUST00000022480 ENSMUSP00000022480 TRANSLATION protein_coding - CCDS36866.1 5 1029.0 19.0 12.8725 0.7 747.5 0.0 -4,0 0.4806 27 17.706 MINOR ENSMUSG00000021913 Ogdhl ENSMUST00000228529 ENSMUSP00000154185 TRANSLATION protein_coding - - - 1010.0 19.0 13.02 10.0 747.5 0.0 -4,0 1.0 28 21.0 PRINCIPAL:1 ENSMUSG00000021913 Ogdhl ENSMUST00000228286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021944 Gata4 ENSMUST00000118022 ENSMUSP00000113891 TRANSLATION protein_coding - CCDS49519.1 1 441.0 8.0 3.0 6.6 280.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:4 ENSMUSG00000021944 Gata4 ENSMUST00000067417 ENSMUSP00000066927 TRANSLATION protein_coding - CCDS79331.1 1 442.0 8.0 3.0 6.6 280.0 0.0 -4,-5 0.992 5 16.0 ALTERNATIVE:1 ENSMUSG00000021944 Gata4 ENSMUST00000121312 ENSMUSP00000113451 TRANSLATION protein_coding - - 1 236.0 8.0 3.0 2.8 107.4 0.0 -4,-5 0.2008 3 14.642 MINOR ENSMUSG00000021944 Gata4 ENSMUST00000156782 ENSMUSP00000114369 TRANSLATION protein_coding stop - 1 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021944 Gata4 ENSMUST00000132122 ENSMUSP00000121008 TRANSLATION protein_coding stop - 1 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021944 Gata4 ENSMUST00000137244 ENSMUSP00000114279 TRANSLATION protein_coding stop - 1 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000223607 ENSMUSP00000153180 TRANSLATION protein_coding - - - 1243.0 0.0 11.3 4.8 1152.0 20.0 -4,-5 0.2934 12 11.724 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000225078 - NO_TRANSLATION retained_intron ENSMUSG00000021733 Slc4a7 ENSMUST00000224750 - NO_TRANSLATION retained_intron ENSMUSG00000021733 Slc4a7 ENSMUST00000224672 ENSMUSP00000152950 TRANSLATION protein_coding - - - 1200.0 0.0 11.3 2.1 1152.1 20.0 -4,-5 0.2309 11 10.962 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000225613 - NO_TRANSLATION retained_intron ENSMUSG00000021733 Slc4a7 ENSMUST00000224197 - NO_TRANSLATION retained_intron ENSMUSG00000021733 Slc4a7 ENSMUST00000225238 ENSMUSP00000152984 TRANSLATION protein_coding - - - 1151.0 0.0 11.35 10.4 1157.8 20.0 -4,-5 0.7409 12 13.762 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000225630 ENSMUSP00000153597 TRANSLATION protein_coding - - - 1118.0 0.0 11.3 9.0 1155.5 20.0 -4,-5 0.7029 12 13.122 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000224752 ENSMUSP00000153185 TRANSLATION protein_coding - - - 1212.0 0.0 11.3 0.0 1152.0 20.0 -4,-5 0.1465 11 10.644 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000224049 ENSMUSP00000153093 TRANSLATION protein_coding - - - 1113.0 0.0 11.3 0.0 1155.5 20.0 -4,-5 0.1616 12 10.854 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000226079 ENSMUSP00000153323 TRANSLATION protein_coding - - - 1095.0 0.0 11.05 7.9 1164.6 20.0 -4,-5 0.6327 11 12.858 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000223761 ENSMUSP00000153045 TRANSLATION protein_coding - - - 1254.0 0.0 11.3 8.4 1155.3 20.0 -4,-5 0.6053 12 12.942 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000223740 ENSMUSP00000152933 TRANSLATION protein_coding - - - 1126.0 0.0 11.05 3.6 1164.6 20.0 -4,-5 0.3761 12 11.638 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000225979 ENSMUSP00000153690 TRANSLATION protein_coding - - - 1138.0 0.0 11.6 5.4 1155.9 20.0 -4,-5 0.4029 12 12.726 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000223981 ENSMUSP00000153084 TRANSLATION protein_coding - - - 1220.0 0.0 11.3 5.4 1155.3 20.0 -4,-5 0.3677 11 12.09 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000223771 ENSMUSP00000153532 TRANSLATION nonsense_mediated_decay start - - 88.0 0.0 1.75 0.0 142.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000224952 ENSMUSP00000153345 TRANSLATION protein_coding - - - 1146.0 0.0 11.35 1.7 1157.8 20.0 -4,-5 0.2883 12 11.294 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000223695 ENSMUSP00000153648 TRANSLATION protein_coding - - - 1133.0 0.0 11.6 1.7 1155.9 20.0 -4,-5 0.3907 12 11.678 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000225496 - NO_TRANSLATION retained_intron ENSMUSG00000021733 Slc4a7 ENSMUST00000224222 ENSMUSP00000153116 TRANSLATION protein_coding - - - 1248.0 0.0 11.3 3.7 1152.0 20.0 -4,-5 0.2317 12 11.408 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000225508 - NO_TRANSLATION retained_intron ENSMUSG00000021733 Slc4a7 ENSMUST00000225232 ENSMUSP00000153280 TRANSLATION protein_coding stop - - 932.0 0.0 10.97 0.0 865.8 18.0 -4,-5 0.0709 9 -2.0 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000057015 ENSMUSP00000058313 TRANSLATION protein_coding - CCDS36810.1 1 1131.0 0.0 11.05 15.1 1164.6 20.0 -4,-5 1.0 12 14.902 PRINCIPAL:1 ENSMUSG00000021733 Slc4a7 ENSMUST00000224333 ENSMUSP00000153470 TRANSLATION protein_coding - - - 1215.0 0.0 11.3 4.7 1155.3 20.0 -4,-5 0.3149 11 11.89 MINOR ENSMUSG00000021733 Slc4a7 ENSMUST00000225175 ENSMUSP00000153166 TRANSLATION protein_coding - - - 1205.0 0.0 11.3 5.4 1152.1 20.0 -4,-5 0.3477 11 11.898 MINOR ENSMUSG00000035161 Ints6 ENSMUST00000225193 - NO_TRANSLATION retained_intron ENSMUSG00000035161 Ints6 ENSMUST00000053959 ENSMUSP00000086788 TRANSLATION protein_coding - CCDS27191.1 1 883.0 3.0 10.15 12.1 172.2 0.0 -4,-7 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000035161 Ints6 ENSMUST00000225250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035161 Ints6 ENSMUST00000223585 ENSMUSP00000152954 TRANSLATION protein_coding - CCDS27191.1 - 883.0 3.0 10.15 12.1 172.2 0.0 -4,-7 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000035161 Ints6 ENSMUST00000225700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035161 Ints6 ENSMUST00000225406 - NO_TRANSLATION retained_intron ENSMUSG00000035161 Ints6 ENSMUST00000224891 - NO_TRANSLATION retained_intron ENSMUSG00000076890 Traj40 ENSMUST00000103702 ENSMUSP00000143787 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000039543 Cfap70 ENSMUST00000143940 - NO_TRANSLATION retained_intron ENSMUSG00000039543 Cfap70 ENSMUST00000022349 ENSMUSP00000022349 TRANSLATION protein_coding - CCDS49411.1 1 1124.0 0.0 2.56 0.0 38.9 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000039543 Cfap70 ENSMUST00000022348 ENSMUSP00000022348 TRANSLATION protein_coding - CCDS49412.1 1 1097.0 0.0 2.56 0.0 38.9 0.0 -4,-5 0.5815 2 8.0 ALTERNATIVE:2 ENSMUSG00000039543 Cfap70 ENSMUST00000056073 ENSMUSP00000056869 TRANSLATION protein_coding - CCDS49413.1 1 1141.0 0.0 2.56 0.1 38.9 0.0 -4,-5 0.5999 2 8.0 ALTERNATIVE:2 ENSMUSG00000039543 Cfap70 ENSMUST00000141432 - NO_TRANSLATION retained_intron ENSMUSG00000039543 Cfap70 ENSMUST00000148692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076913 Traj16 ENSMUST00000103725 ENSMUSP00000142804 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000041044 Lrit1 ENSMUST00000120052 ENSMUSP00000113964 TRANSLATION protein_coding - CCDS26950.2 1 624.0 0.0 1.32 7.8 116.5 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000039376 Synpo2l ENSMUST00000057090 ENSMUSP00000053176 TRANSLATION protein_coding - CCDS26849.1 1 975.0 0.0 1.6 1.1 32.5 0.0 -4,-5 0.5312 13 10.343 MINOR ENSMUSG00000039376 Synpo2l ENSMUST00000119483 ENSMUSP00000112760 TRANSLATION protein_coding - CCDS79268.1 1 749.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.135 13 0.0 MINOR ENSMUSG00000039376 Synpo2l ENSMUST00000117386 ENSMUSP00000112792 TRANSLATION protein_coding - CCDS79269.1 1 978.0 0.0 1.6 2.2 45.8 0.0 -4,-5 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000076878 Traj53 ENSMUST00000103690 ENSMUSP00000143627 TRANSLATION TR_J_gene start/stop - - 22.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000091923 Gm8267 ENSMUST00000169062 ENSMUSP00000129402 TRANSLATION protein_coding - CCDS49463.1 5 204.0 0.0 2.6 0.0 88.2 0.0 -4,-2 0.1384 - 7.04 ALTERNATIVE:2 ENSMUSG00000091923 Gm8267 ENSMUST00000226900 ENSMUSP00000153838 TRANSLATION protein_coding - - - 261.0 0.0 3.08 0.0 88.2 1.0 -4,-2 0.7729 - 8.0 PRINCIPAL:2 ENSMUSG00000091923 Gm8267 ENSMUST00000228619 - NO_TRANSLATION retained_intron ENSMUSG00000091923 Gm8267 ENSMUST00000165003 ENSMUSP00000129187 TRANSLATION protein_coding - - 5 261.0 0.0 3.08 0.0 88.2 1.0 -4,-2 0.7729 - 8.0 PRINCIPAL:2 ENSMUSG00000094258 Gm8159 ENSMUST00000163738 ENSMUSP00000126261 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 73.1 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000094258 Gm8159 ENSMUST00000170546 ENSMUSP00000127748 TRANSLATION protein_coding - - 5 267.0 0.0 4.0 0.0 73.1 0.0 -4,-5 0.7383 - 12.0 PRINCIPAL:1 ENSMUSG00000021751 Acox2 ENSMUST00000170534 ENSMUSP00000130543 TRANSLATION protein_coding stop - 5 201.0 9.0 3.13 0.0 95.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000021751 Acox2 ENSMUST00000171175 - NO_TRANSLATION retained_intron ENSMUSG00000021751 Acox2 ENSMUST00000164598 ENSMUSP00000126464 TRANSLATION protein_coding - CCDS36801.1 1 681.0 31.0 10.78 7.0 341.8 0.0 -4,-5 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000021751 Acox2 ENSMUST00000164412 - NO_TRANSLATION retained_intron ENSMUSG00000021751 Acox2 ENSMUST00000116361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021751 Acox2 ENSMUST00000022271 ENSMUSP00000022271 TRANSLATION protein_coding - CCDS36801.1 1 681.0 31.0 10.78 7.0 341.8 0.0 -4,-5 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000021751 Acox2 ENSMUST00000171567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021751 Acox2 ENSMUST00000165169 - NO_TRANSLATION retained_intron ENSMUSG00000022031 Elp3 ENSMUST00000224743 ENSMUSP00000153177 TRANSLATION nonsense_mediated_decay - - - 553.0 0.0 8.64 0.0 218.2 0.0 -4,-7 0.0329 15 -2.0 MINOR ENSMUSG00000022031 Elp3 ENSMUST00000225355 ENSMUSP00000153462 TRANSLATION protein_coding - - - 547.0 0.0 9.39 23.2 225.8 0.0 -4,-7 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000022031 Elp3 ENSMUST00000022609 ENSMUSP00000022609 TRANSLATION protein_coding - CCDS56965.1 1 566.0 0.0 9.39 0.1 225.8 0.0 -4,-6 0.2146 16 12.0 MINOR ENSMUSG00000072572 Slc39a2 ENSMUST00000047726 ENSMUSP00000038707 TRANSLATION protein_coding - CCDS36914.1 1 309.0 0.0 0.0 11.8 193.9 0.0 1,-3 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000072572 Slc39a2 ENSMUST00000160668 - NO_TRANSLATION retained_intron ENSMUSG00000095384 1700001F09Rik ENSMUST00000178178 ENSMUSP00000136772 TRANSLATION protein_coding - CCDS49459.1 1 184.0 0.0 3.15 0.0 67.3 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050030 Or4k1 ENSMUST00000051563 ENSMUSP00000052079 TRANSLATION protein_coding - CCDS27004.1 - 311.0 0.0 1.0 11.8 145.0 6.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050030 Or4k1 ENSMUST00000215329 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050030 Or4k1 ENSMUST00000216423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050030 Or4k1 ENSMUST00000213685 ENSMUSP00000149796 TRANSLATION protein_coding - CCDS27004.1 5 311.0 0.0 1.0 11.8 145.0 6.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050030 Or4k1 ENSMUST00000214046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093945 Gm3543 ENSMUST00000111870 ENSMUSP00000107501 TRANSLATION protein_coding - - 3 184.0 0.0 3.48 0.0 68.7 0.0 -4,-6 0.7335 - 12.0 PRINCIPAL:1 ENSMUSG00000093945 Gm3543 ENSMUST00000249434 ENSMUSP00000159760 TRANSLATION protein_coding - - - 120.0 0.0 2.15 0.0 0.0 0.0 -4,-5 0.0 - 3.342 MINOR ENSMUSG00000005148 Klf5 ENSMUST00000005279 ENSMUSP00000005279 TRANSLATION protein_coding - CCDS27311.1 1 446.0 12.0 1.75 0.1 65.5 0.0 -4,-2 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000005148 Klf5 ENSMUST00000226784 ENSMUSP00000154786 TRANSLATION protein_coding - - - 309.0 4.0 0.75 0.0 18.0 0.0 -4,-5 0.0016 4 4.89 MINOR ENSMUSG00000022139 Mbnl2 ENSMUST00000227153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022139 Mbnl2 ENSMUST00000228115 ENSMUSP00000154652 TRANSLATION protein_coding start/stop - - 253.0 8.0 1.475 0.0 31.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000022139 Mbnl2 ENSMUST00000088419 ENSMUSP00000085763 TRANSLATION protein_coding - CCDS49567.1 1 373.0 16.0 3.475 24.9 52.3 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:4 ENSMUSG00000022139 Mbnl2 ENSMUST00000227594 ENSMUSP00000154559 TRANSLATION protein_coding - CCDS49567.1 - 373.0 16.0 3.475 24.9 52.3 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:4 ENSMUSG00000022139 Mbnl2 ENSMUST00000227644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022139 Mbnl2 ENSMUST00000226800 ENSMUSP00000154734 TRANSLATION protein_coding - CCDS49568.1 - 355.0 16.0 3.475 19.7 52.3 0.0 -4,-6 0.9349 1 17.128 ALTERNATIVE:1 ENSMUSG00000022139 Mbnl2 ENSMUST00000227012 ENSMUSP00000153973 TRANSLATION protein_coding - CCDS49568.1 - 355.0 16.0 3.475 19.7 52.3 0.0 -4,-6 0.9349 1 17.128 ALTERNATIVE:1 ENSMUSG00000022139 Mbnl2 ENSMUST00000227484 - NO_TRANSLATION retained_intron ENSMUSG00000022139 Mbnl2 ENSMUST00000227508 - NO_TRANSLATION retained_intron ENSMUSG00000022139 Mbnl2 ENSMUST00000167459 ENSMUSP00000126186 TRANSLATION protein_coding - - 1 385.0 16.0 3.475 23.7 52.3 0.0 -4,-6 0.8397 2 17.8 ALTERNATIVE:1 ENSMUSG00000071262 Zfp957 ENSMUST00000162937 - NO_TRANSLATION retained_intron ENSMUSG00000071262 Zfp957 ENSMUST00000040802 ENSMUSP00000039470 TRANSLATION protein_coding - CCDS49551.1 1 567.0 7.0 0.0 0.0 38.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071262 Zfp957 ENSMUST00000161649 ENSMUSP00000124930 TRANSLATION protein_coding - CCDS49551.1 5 567.0 7.0 0.0 0.0 38.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000015759 Cnih1 ENSMUST00000146629 ENSMUSP00000116885 TRANSLATION protein_coding - - 5 160.0 0.0 3.929 35.8 155.6 3.0 1,-3 0.7165 3 10.0 MINOR ENSMUSG00000015759 Cnih1 ENSMUST00000227583 - NO_TRANSLATION retained_intron ENSMUSG00000015759 Cnih1 ENSMUST00000015903 ENSMUSP00000015903 TRANSLATION protein_coding - CCDS26980.1 1 144.0 0.0 3.83 34.2 167.1 3.0 2,-3 1.0 1 11.618 PRINCIPAL:1 ENSMUSG00000022125 Cln5 ENSMUST00000022721 ENSMUSP00000022721 TRANSLATION protein_coding - CCDS27314.1 1 341.0 0.0 3.95 0.1 552.5 0.0 1,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000022125 Cln5 ENSMUST00000227117 ENSMUSP00000154528 TRANSLATION nonsense_mediated_decay start - - 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006527 Sfmbt1 ENSMUST00000227445 - NO_TRANSLATION retained_intron ENSMUSG00000006527 Sfmbt1 ENSMUST00000228006 ENSMUSP00000153861 TRANSLATION protein_coding - CCDS26897.1 - 863.0 0.0 7.947 18.6 450.0 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000006527 Sfmbt1 ENSMUST00000227201 ENSMUSP00000154646 TRANSLATION protein_coding stop - - 636.0 0.0 6.647 0.0 412.9 0.0 -4,-5 0.0269 3 -2.0 MINOR ENSMUSG00000006527 Sfmbt1 ENSMUST00000227303 ENSMUSP00000153962 TRANSLATION protein_coding - - - 820.0 0.0 7.447 0.0 412.9 0.0 -4,-5 0.0409 3 8.772 MINOR ENSMUSG00000006527 Sfmbt1 ENSMUST00000112184 ENSMUSP00000107802 TRANSLATION protein_coding - CCDS26897.1 5 863.0 0.0 7.947 18.6 450.0 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000006527 Sfmbt1 ENSMUST00000054230 ENSMUSP00000056744 TRANSLATION protein_coding - CCDS26897.1 5 863.0 0.0 7.947 18.6 450.0 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000060548 Tnfrsf19 ENSMUST00000224371 ENSMUSP00000153577 TRANSLATION protein_coding - - - 214.0 0.0 0.375 0.0 46.8 2.0 4,-1 0.1141 - 12.0 MINOR ENSMUSG00000060548 Tnfrsf19 ENSMUST00000111234 ENSMUSP00000106865 TRANSLATION protein_coding - CCDS36941.1 1 416.0 0.0 0.375 4.9 46.8 2.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000060548 Tnfrsf19 ENSMUST00000225501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060548 Tnfrsf19 ENSMUST00000111236 ENSMUSP00000106867 TRANSLATION protein_coding - CCDS36941.1 1 416.0 0.0 0.375 4.9 46.8 2.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000060548 Tnfrsf19 ENSMUST00000225730 ENSMUSP00000152920 TRANSLATION protein_coding - - - 214.0 0.0 0.375 0.0 46.8 2.0 4,-1 0.1141 - 12.0 MINOR ENSMUSG00000096551 Trav10 ENSMUST00000103583 ENSMUSP00000100360 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.2 0.0 62.7 0.0 4,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000006289 Osgep ENSMUST00000159292 ENSMUSP00000124039 TRANSLATION protein_coding - CCDS27026.1 1 335.0 19.0 9.0 33.5 295.1 0.0 -4,-6 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000006289 Osgep ENSMUST00000160393 ENSMUSP00000125155 TRANSLATION nonsense_mediated_decay - CCDS27026.1 1 335.0 19.0 9.0 33.5 295.1 0.0 -4,-6 1.0 12 -2.0 MINOR ENSMUSG00000006289 Osgep ENSMUST00000160375 ENSMUSP00000124099 TRANSLATION protein_coding stop - 5 156.0 12.0 4.0 0.0 147.9 0.0 0,-5 0.0012 3 -2.0 MINOR ENSMUSG00000006289 Osgep ENSMUST00000160464 - NO_TRANSLATION retained_intron ENSMUSG00000006289 Osgep ENSMUST00000162850 - NO_TRANSLATION retained_intron ENSMUSG00000006289 Osgep ENSMUST00000162177 ENSMUSP00000124016 TRANSLATION protein_coding - - 1 254.0 18.0 7.0 0.1 224.1 0.0 0,-5 0.0023 8 9.072 MINOR ENSMUSG00000006289 Osgep ENSMUST00000006452 ENSMUSP00000006452 TRANSLATION nonsense_mediated_decay - - 5 186.0 13.0 4.5 0.0 178.0 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000006289 Osgep ENSMUST00000160890 ENSMUSP00000124659 TRANSLATION nonsense_mediated_decay - - 2 80.0 1.0 2.0 0.0 45.6 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000050766 Ear14 ENSMUST00000049559 ENSMUSP00000056293 TRANSLATION protein_coding start - - 155.0 10.0 1.0 0.1 108.9 0.0 4,-1 0.3818 - -2.0 MINOR ENSMUSG00000050766 Ear14 ENSMUST00000228064 ENSMUSP00000153887 TRANSLATION protein_coding - - - 153.0 10.0 1.0 0.0 108.9 0.0 4,-1 0.8476 - 18.0 PRINCIPAL:1 ENSMUSG00000096775 Gm5796 ENSMUST00000096184 ENSMUSP00000093898 TRANSLATION protein_coding - CCDS49378.1 1 205.0 0.0 3.0 0.0 74.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022097 Sftpc ENSMUST00000022692 ENSMUSP00000022692 TRANSLATION protein_coding - CCDS27254.1 1 193.0 0.0 0.85 8.9 241.7 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000022097 Sftpc ENSMUST00000227152 - NO_TRANSLATION retained_intron ENSMUSG00000022193 Psmb5 ENSMUST00000022803 ENSMUSP00000022803 TRANSLATION protein_coding - CCDS27095.1 1 264.0 0.0 2.5 7.9 164.3 0.0 -4,-7 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000022193 Psmb5 ENSMUST00000227257 ENSMUSP00000154672 TRANSLATION protein_coding - - - 177.0 0.0 1.5 0.0 56.7 0.0 -4,-7 0.0 8 3.6 MINOR ENSMUSG00000059488 Or4k15 ENSMUST00000079142 ENSMUSP00000078145 TRANSLATION protein_coding - CCDS27003.1 - 324.0 0.0 1.0 9.7 163.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059488 Or4k15 ENSMUST00000215317 ENSMUSP00000149886 TRANSLATION protein_coding - CCDS27003.1 5 324.0 0.0 1.0 9.7 163.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068245 Phf11d ENSMUST00000095157 ENSMUSP00000092779 TRANSLATION protein_coding - CCDS27170.3 1 320.0 12.0 2.2 0.0 69.8 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000068245 Phf11d ENSMUST00000161031 ENSMUSP00000125181 TRANSLATION protein_coding - - 2 337.0 12.0 2.2 0.1 69.8 0.0 -4,-5 0.0527 4 14.0 ALTERNATIVE:2 ENSMUSG00000068245 Phf11d ENSMUST00000161754 - NO_TRANSLATION retained_intron ENSMUSG00000068245 Phf11d ENSMUST00000160425 ENSMUSP00000124578 TRANSLATION protein_coding - - 5 269.0 12.0 2.2 0.0 69.8 0.0 -4,-5 0.0308 3 14.0 ALTERNATIVE:2 ENSMUSG00000021868 Ppif ENSMUST00000223872 - NO_TRANSLATION retained_intron ENSMUSG00000021868 Ppif ENSMUST00000125881 - NO_TRANSLATION retained_intron ENSMUSG00000021868 Ppif ENSMUST00000022419 ENSMUSP00000022419 TRANSLATION protein_coding - CCDS26874.1 1 206.0 8.0 4.43 13.4 163.2 0.0 -2,1 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000022123 Scel ENSMUST00000095576 ENSMUSP00000093233 TRANSLATION protein_coding - CCDS37002.1 1 652.0 8.0 2.0 0.1 0.0 0.0 -4,-7 0.9685 21 12.0 PRINCIPAL:2 ENSMUSG00000022123 Scel ENSMUST00000227322 ENSMUSP00000154402 TRANSLATION protein_coding - - - 632.0 8.0 2.0 0.3 0.0 0.0 -4,-7 0.1462 20 12.0 ALTERNATIVE:2 ENSMUSG00000022037 Clu ENSMUST00000153460 ENSMUSP00000121633 TRANSLATION protein_coding stop - 2 265.0 0.0 0.0 0.0 281.5 0.0 4,-1 0.0024 9 -2.0 MINOR ENSMUSG00000022037 Clu ENSMUST00000127387 ENSMUSP00000114720 TRANSLATION protein_coding stop - 3 233.0 0.0 0.0 0.0 257.2 0.0 4,-1 0.0024 9 -2.0 MINOR ENSMUSG00000022037 Clu ENSMUST00000144619 ENSMUSP00000117953 TRANSLATION protein_coding stop - 3 209.0 0.0 0.0 0.0 131.5 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000022037 Clu ENSMUST00000152903 - NO_TRANSLATION retained_intron ENSMUSG00000022037 Clu ENSMUST00000022616 ENSMUSP00000022616 TRANSLATION protein_coding - CCDS36957.1 1 448.0 0.0 0.0 1.5 511.7 0.0 4,-1 1.0 17 7.0 PRINCIPAL:1 ENSMUSG00000022037 Clu ENSMUST00000146990 - NO_TRANSLATION retained_intron ENSMUSG00000022037 Clu ENSMUST00000138665 ENSMUSP00000121056 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0019 - -2.0 MINOR ENSMUSG00000022037 Clu ENSMUST00000128539 ENSMUSP00000121485 TRANSLATION protein_coding stop - 2 203.0 0.0 0.0 0.0 249.8 0.0 4,-1 0.0024 8 -2.0 MINOR ENSMUSG00000022037 Clu ENSMUST00000138191 ENSMUSP00000117555 TRANSLATION protein_coding stop - 5 225.0 0.0 0.0 0.0 256.5 0.0 4,-1 0.0024 9 -2.0 MINOR ENSMUSG00000072575 Eddm3b ENSMUST00000100645 ENSMUSP00000098210 TRANSLATION protein_coding - CCDS27036.1 1 149.0 0.0 1.0 0.0 28.4 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000063277 Gm10128 ENSMUST00000171360 ENSMUSP00000129516 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 74.5 0.0 -4,-5 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000033885 Pxk ENSMUST00000036682 ENSMUSP00000035265 TRANSLATION protein_coding - - 1 581.0 0.0 12.45 11.4 129.6 0.0 -4,-6 0.8551 13 11.0 ALTERNATIVE:1 ENSMUSG00000033885 Pxk ENSMUST00000225653 ENSMUSP00000152987 TRANSLATION protein_coding - CCDS26810.1 - 582.0 0.0 12.45 11.4 129.6 0.0 -4,-6 1.0 13 11.0 PRINCIPAL:4 ENSMUSG00000033885 Pxk ENSMUST00000225827 - NO_TRANSLATION retained_intron ENSMUSG00000033885 Pxk ENSMUST00000225616 - NO_TRANSLATION retained_intron ENSMUSG00000033885 Pxk ENSMUST00000224462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033885 Pxk ENSMUST00000112689 ENSMUSP00000108309 TRANSLATION protein_coding - CCDS36799.1 1 515.0 0.0 12.45 5.5 100.4 0.0 -4,-6 0.4258 12 7.299 MINOR ENSMUSG00000040822 1700123O20Rik ENSMUST00000226235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040822 1700123O20Rik ENSMUST00000038539 ENSMUSP00000047702 TRANSLATION protein_coding - CCDS27099.1 1 142.0 0.0 0.0 6.7 114.7 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000040822 1700123O20Rik ENSMUST00000227269 ENSMUSP00000153947 TRANSLATION protein_coding - CCDS27099.1 - 142.0 0.0 0.0 6.7 114.7 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000040822 1700123O20Rik ENSMUST00000228027 ENSMUSP00000154271 TRANSLATION protein_coding stop - - 103.0 0.0 0.0 0.0 72.5 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000022209 Dhrs2 ENSMUST00000165432 ENSMUSP00000129115 TRANSLATION protein_coding - CCDS27110.1 5 282.0 29.0 6.35 2.1 169.5 0.0 -4,0 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000022209 Dhrs2 ENSMUST00000022820 ENSMUSP00000022820 TRANSLATION protein_coding - CCDS27110.1 1 282.0 29.0 6.35 2.1 169.5 0.0 -4,0 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000037833 Sh2d4b ENSMUST00000096000 ENSMUSP00000093699 TRANSLATION protein_coding - CCDS26955.1 1 431.0 0.0 1.6 8.0 53.5 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037833 Sh2d4b ENSMUST00000225854 - NO_TRANSLATION retained_intron ENSMUSG00000037833 Sh2d4b ENSMUST00000070328 ENSMUSP00000064708 TRANSLATION protein_coding - - 1 178.0 0.0 1.6 0.0 53.5 0.0 -4,-5 0.0339 - 12.0 MINOR ENSMUSG00000115022 Gm49387 ENSMUST00000167175 ENSMUSP00000128588 TRANSLATION nonsense_mediated_decay,RT - - 5 140.0 9.0 4.0 0.0 112.6 0.0 -4,-5 0.744 - -2.0 PRINCIPAL:1 ENSMUSG00000060084 Or11h23 ENSMUST00000213101 ENSMUSP00000149491 TRANSLATION protein_coding - CCDS27023.1 5 307.0 0.0 1.0 0.0 175.2 7.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060084 Or11h23 ENSMUST00000073561 ENSMUSP00000073251 TRANSLATION protein_coding - CCDS27023.1 - 307.0 0.0 1.0 0.0 175.2 7.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072624 Gm5460 ENSMUST00000100719 ENSMUSP00000098285 TRANSLATION protein_coding - CCDS49442.1 1 254.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.489 - 0.0 PRINCIPAL:1 ENSMUSG00000072624 Gm5460 ENSMUST00000227522 - NO_TRANSLATION retained_intron ENSMUSG00000072624 Gm5460 ENSMUST00000226499 ENSMUSP00000154151 TRANSLATION protein_coding start/stop - - 165.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000072624 Gm5460 ENSMUST00000227383 ENSMUSP00000154683 TRANSLATION protein_coding start - - 529.0 0.0 7.423 0.0 134.2 0.0 -4,-6 0.1651 - -2.0 MINOR ENSMUSG00000022061 Nkx3-1 ENSMUST00000022646 ENSMUSP00000022646 TRANSLATION protein_coding - CCDS27237.1 1 237.0 0.0 0.8 1.3 73.3 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000059256 Gzmd ENSMUST00000082093 ENSMUSP00000080742 TRANSLATION protein_coding - CCDS49502.1 1 252.0 11.0 4.0 2.4 190.2 0.0 3,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000095226 Gm10377 ENSMUST00000100695 ENSMUSP00000098260 TRANSLATION protein_coding - CCDS56950.1 1 184.0 0.0 3.15 0.0 63.9 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000076924 Traj4 ENSMUST00000103736 ENSMUSP00000142969 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.6648 - -2.0 PRINCIPAL:1 ENSMUSG00000059069 Or11h4 ENSMUST00000214290 ENSMUSP00000150627 TRANSLATION protein_coding - CCDS49476.1 5 313.0 0.0 1.0 10.4 176.8 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059069 Or11h4 ENSMUST00000074674 ENSMUSP00000074242 TRANSLATION protein_coding - CCDS49476.1 3 313.0 0.0 1.0 10.4 176.8 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091148 Gm3182 ENSMUST00000167902 ENSMUSP00000126316 TRANSLATION protein_coding - - 5 263.0 0.0 4.0 0.0 72.6 0.0 -4,-5 0.7338 - 12.0 PRINCIPAL:1 ENSMUSG00000091148 Gm3182 ENSMUST00000169364 ENSMUSP00000126667 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 72.6 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000056234 Ncoa4 ENSMUST00000226479 ENSMUSP00000154536 TRANSLATION nonsense_mediated_decay - - - 102.0 0.0 2.698 0.0 58.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056234 Ncoa4 ENSMUST00000228143 - NO_TRANSLATION retained_intron ENSMUSG00000056234 Ncoa4 ENSMUST00000168114 ENSMUSP00000131253 TRANSLATION protein_coding stop - 3 106.0 0.0 2.0 0.0 45.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000056234 Ncoa4 ENSMUST00000168385 ENSMUSP00000126222 TRANSLATION protein_coding stop - 3 205.0 0.0 1.83 0.0 158.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000056234 Ncoa4 ENSMUST00000169722 ENSMUSP00000129917 TRANSLATION protein_coding stop - 5 338.0 0.0 4.66 0.0 253.8 0.0 -4,-5 0.035 3 -2.0 MINOR ENSMUSG00000056234 Ncoa4 ENSMUST00000227112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056234 Ncoa4 ENSMUST00000163336 ENSMUSP00000126071 TRANSLATION protein_coding - CCDS36863.1 1 625.0 0.0 4.66 7.3 253.8 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000056234 Ncoa4 ENSMUST00000168034 ENSMUSP00000129422 TRANSLATION protein_coding stop - 3 131.0 0.0 3.58 0.0 63.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000056234 Ncoa4 ENSMUST00000111994 ENSMUSP00000107625 TRANSLATION protein_coding - CCDS36863.1 1 625.0 0.0 4.66 7.3 253.8 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000056234 Ncoa4 ENSMUST00000227498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056234 Ncoa4 ENSMUST00000228779 - NO_TRANSLATION retained_intron ENSMUSG00000056234 Ncoa4 ENSMUST00000168334 ENSMUSP00000128739 TRANSLATION nonsense_mediated_decay - - 1 96.0 0.0 2.5 0.0 56.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056234 Ncoa4 ENSMUST00000164341 ENSMUSP00000126780 TRANSLATION protein_coding stop - 5 99.0 0.0 2.5 0.0 56.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034190 Chmp7 ENSMUST00000224601 - NO_TRANSLATION retained_intron ENSMUSG00000034190 Chmp7 ENSMUST00000036381 ENSMUSP00000047700 TRANSLATION protein_coding - CCDS27242.1 1 451.0 0.0 1.8 12.1 79.0 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000034190 Chmp7 ENSMUST00000224964 - NO_TRANSLATION retained_intron ENSMUSG00000034190 Chmp7 ENSMUST00000225036 - NO_TRANSLATION retained_intron ENSMUSG00000021797 9230112D13Rik ENSMUST00000022325 ENSMUSP00000022325 TRANSLATION protein_coding - CCDS56948.1 1 137.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.881 - 0.0 PRINCIPAL:1 ENSMUSG00000021879 Dnah12 ENSMUST00000073309 ENSMUSP00000073035 TRANSLATION protein_coding start/stop - 1 203.0 12.0 3.5 0.0 268.4 0.0 -4,-6 0.0008 - -2.0 MINOR ENSMUSG00000021879 Dnah12 ENSMUST00000022433 ENSMUSP00000022433 TRANSLATION protein_coding - - 5 3960.0 46.0 41.168 9.2 2649.3 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000055538 Zcchc24 ENSMUST00000184642 - NO_TRANSLATION retained_intron ENSMUSG00000055538 Zcchc24 ENSMUST00000069180 ENSMUSP00000068677 TRANSLATION protein_coding - CCDS49419.1 1 241.0 8.0 2.6 33.0 90.1 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000045107 Saysd1 ENSMUST00000059666 ENSMUSP00000055382 TRANSLATION protein_coding - CCDS49406.1 1 188.0 0.0 0.0 0.0 100.4 0.0 -4,-1 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000045107 Saysd1 ENSMUST00000226090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022076 Klhl1 ENSMUST00000022666 ENSMUSP00000022666 TRANSLATION protein_coding - CCDS27308.1 1 751.0 0.0 9.5 10.7 494.9 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079396 Gm3411 ENSMUST00000170104 ENSMUSP00000127293 TRANSLATION protein_coding - CCDS56927.1 1 150.0 0.0 3.0 0.0 69.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000114865 Cirop ENSMUST00000227947 ENSMUSP00000153756 TRANSLATION protein_coding start/stop - - 381.0 4.0 0.025 0.0 0.0 0.0 -3,-1 0.1144 - -2.0 MINOR ENSMUSG00000114865 Cirop ENSMUST00000224691 ENSMUSP00000153646 TRANSLATION protein_coding - - - 699.0 4.0 -1.475 0.8 0.0 0.0 0,0 0.6744 - 4.0 PRINCIPAL:1 ENSMUSG00000021811 Dnajc9 ENSMUST00000223950 - NO_TRANSLATION retained_intron ENSMUSG00000021811 Dnajc9 ENSMUST00000022345 ENSMUSP00000022345 TRANSLATION protein_coding - CCDS26844.1 1 259.0 0.0 4.55 6.3 63.9 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000021811 Dnajc9 ENSMUST00000223844 - NO_TRANSLATION retained_intron ENSMUSG00000021811 Dnajc9 ENSMUST00000223889 - NO_TRANSLATION retained_intron ENSMUSG00000076874 Traj59 ENSMUST00000103686 - NO_TRANSLATION processed_transcript ENSMUSG00000076874 Traj59 ENSMUST00000197589 ENSMUSP00000142997 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000040632 Nrl ENSMUST00000178694 ENSMUSP00000136445 TRANSLATION protein_coding - CCDS27113.1 1 237.0 0.0 1.0 7.8 161.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040632 Nrl ENSMUST00000228902 ENSMUSP00000154322 TRANSLATION protein_coding stop - - 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040632 Nrl ENSMUST00000228351 - NO_TRANSLATION retained_intron ENSMUSG00000040632 Nrl ENSMUST00000111404 ENSMUSP00000107035 TRANSLATION protein_coding - CCDS27113.1 1 237.0 0.0 1.0 7.8 161.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040632 Nrl ENSMUST00000062232 ENSMUSP00000054457 TRANSLATION protein_coding - CCDS27113.1 1 237.0 0.0 1.0 7.8 161.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040632 Nrl ENSMUST00000228287 ENSMUSP00000153933 TRANSLATION protein_coding stop - - 226.0 0.0 1.0 0.0 161.6 0.0 -4,-5 0.0516 - -2.0 MINOR ENSMUSG00000040632 Nrl ENSMUST00000226858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006522 Itih3 ENSMUST00000227181 - NO_TRANSLATION retained_intron ENSMUSG00000006522 Itih3 ENSMUST00000006697 ENSMUSP00000006697 TRANSLATION protein_coding - CCDS49434.1 5 889.0 5.0 10.98 8.3 440.1 0.0 2,-2 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000006522 Itih3 ENSMUST00000228114 ENSMUSP00000154720 TRANSLATION protein_coding start/stop - - 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0211 - -2.0 MINOR ENSMUSG00000006522 Itih3 ENSMUST00000226547 ENSMUSP00000154256 TRANSLATION protein_coding start/stop - - 224.0 0.0 1.298 0.0 70.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006522 Itih3 ENSMUST00000226179 - NO_TRANSLATION retained_intron ENSMUSG00000006522 Itih3 ENSMUST00000227995 ENSMUSP00000154659 TRANSLATION protein_coding - - - 699.0 5.0 9.232 1.0 394.9 0.0 2,-2 0.0287 10 10.79 MINOR ENSMUSG00000021901 Bap1 ENSMUST00000185987 - NO_TRANSLATION retained_intron ENSMUSG00000021901 Bap1 ENSMUST00000185700 - NO_TRANSLATION retained_intron ENSMUSG00000021901 Bap1 ENSMUST00000188714 - NO_TRANSLATION retained_intron ENSMUSG00000021901 Bap1 ENSMUST00000188453 ENSMUSP00000139824 TRANSLATION nonsense_mediated_decay - - 3 146.0 2.0 2.53 0.0 140.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021901 Bap1 ENSMUST00000187156 ENSMUSP00000139903 TRANSLATION nonsense_mediated_decay start - 3 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021901 Bap1 ENSMUST00000189834 - NO_TRANSLATION retained_intron ENSMUSG00000021901 Bap1 ENSMUST00000022458 ENSMUSP00000022458 TRANSLATION protein_coding - CCDS26910.1 1 728.0 4.0 4.638 13.4 232.9 0.0 -4,-7 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000021901 Bap1 ENSMUST00000190788 - NO_TRANSLATION retained_intron ENSMUSG00000022024 Sugt1 ENSMUST00000226320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022024 Sugt1 ENSMUST00000228669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022024 Sugt1 ENSMUST00000228675 - NO_TRANSLATION retained_intron ENSMUSG00000022024 Sugt1 ENSMUST00000054908 ENSMUSP00000052942 TRANSLATION protein_coding - CCDS36988.1 1 336.0 0.0 5.698 3.3 194.9 0.0 -4,-7 1.0 17 13.0 PRINCIPAL:1 ENSMUSG00000022024 Sugt1 ENSMUST00000227497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096505 Trav4d-4 ENSMUST00000103600 ENSMUSP00000100377 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.3 0.0 43.5 0.0 2,-2 0.8207 - -2.0 PRINCIPAL:1 ENSMUSG00000036461 Elf1 ENSMUST00000227192 ENSMUSP00000153956 TRANSLATION protein_coding - - - 575.0 0.0 1.4 1.3 225.2 0.0 -4,-5 0.1425 4 9.558 MINOR ENSMUSG00000036461 Elf1 ENSMUST00000040131 ENSMUSP00000046515 TRANSLATION protein_coding - CCDS27301.1 1 612.0 0.0 1.4 6.3 267.8 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000036461 Elf1 ENSMUST00000110835 ENSMUSP00000106459 TRANSLATION protein_coding - CCDS27301.1 1 612.0 0.0 1.4 6.3 267.8 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000036461 Elf1 ENSMUST00000227104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076795 Trav8d-2 ENSMUST00000198439 ENSMUSP00000142447 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.25 0.0 62.9 0.0 4,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000095360 Gm3594 ENSMUST00000171784 ENSMUSP00000132178 TRANSLATION protein_coding - - 5 267.0 0.0 4.0 0.0 66.3 0.0 -4,-5 0.7391 - 12.0 PRINCIPAL:1 ENSMUSG00000095360 Gm3594 ENSMUST00000169152 ENSMUSP00000130337 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 66.3 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000022103 Gfra2 ENSMUST00000022699 ENSMUSP00000022699 TRANSLATION protein_coding - CCDS27263.1 1 464.0 0.0 4.2 8.0 164.5 0.0 0,-3 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000022103 Gfra2 ENSMUST00000227633 ENSMUSP00000153937 TRANSLATION protein_coding - - - 309.0 0.0 2.2 0.0 64.2 0.0 -4,-2 0.001 3 1.998 MINOR ENSMUSG00000022103 Gfra2 ENSMUST00000227697 ENSMUSP00000154391 TRANSLATION protein_coding - - - 331.0 0.0 3.2 3.6 137.3 0.0 3,-2 0.1583 7 9.483 MINOR ENSMUSG00000094758 Trav13d-2 ENSMUST00000103596 ENSMUSP00000100373 TRANSLATION TR_V_gene start/stop - - 88.0 0.0 1.0 0.0 50.4 0.0 -4,-5 0.0771 - -2.0 ALTERNATIVE:2 ENSMUSG00000094758 Trav13d-2 ENSMUST00000197954 ENSMUSP00000142721 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.0 0.0 50.7 0.0 4,-1 0.8253 - -2.0 PRINCIPAL:5 ENSMUSG00000068431 Or11g26 ENSMUST00000217437 ENSMUSP00000150814 TRANSLATION protein_coding - CCDS27018.1 5 311.0 0.0 1.0 9.5 184.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068431 Or11g26 ENSMUST00000089836 ENSMUSP00000087273 TRANSLATION protein_coding - CCDS27018.1 - 311.0 0.0 1.0 9.5 184.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068431 Or11g26 ENSMUST00000213935 ENSMUSP00000148928 TRANSLATION protein_coding - CCDS27018.1 5 311.0 0.0 1.0 9.5 184.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091155 Serpine3 ENSMUST00000171692 ENSMUSP00000125769 TRANSLATION protein_coding - CCDS49518.1 1 401.0 0.0 4.37 2.6 258.3 0.0 0,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000054733 Msra ENSMUST00000209513 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054733 Msra ENSMUST00000210428 ENSMUSP00000147689 TRANSLATION protein_coding - CCDS84147.1 1 191.0 9.0 4.5 6.2 218.3 0.0 -4,-6 0.3113 9 17.15 MINOR ENSMUSG00000054733 Msra ENSMUST00000067927 ENSMUSP00000065754 TRANSLATION protein_coding - CCDS27209.1 1 233.0 9.0 5.5 19.1 218.3 0.0 -4,0 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000054733 Msra ENSMUST00000210363 ENSMUSP00000148189 TRANSLATION protein_coding - CCDS84146.1 5 169.0 9.0 4.0 12.4 218.3 0.0 -4,-7 0.7309 9 17.52 MINOR ENSMUSG00000054733 Msra ENSMUST00000209392 - NO_TRANSLATION retained_intron ENSMUSG00000079409 Gm5795 ENSMUST00000171150 ENSMUSP00000133257 TRANSLATION protein_coding - - 5 263.0 0.0 4.0 0.0 76.5 0.0 -4,-5 0.7338 - 12.0 PRINCIPAL:1 ENSMUSG00000079409 Gm5795 ENSMUST00000100920 ENSMUSP00000098480 TRANSLATION protein_coding - CCDS56912.1 5 204.0 0.0 3.0 0.0 76.5 0.0 -4,-5 0.1075 - 10.002 MINOR ENSMUSG00000093813 Trav9n-2 ENSMUST00000180097 ENSMUSP00000137598 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.1 0.0 59.7 0.0 4,-1 0.3388 - -2.0 ALTERNATIVE:2 ENSMUSG00000093813 Trav9n-2 ENSMUST00000198913 ENSMUSP00000142448 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.1 0.0 59.7 0.0 3,-1 0.8103 - -2.0 PRINCIPAL:5 ENSMUSG00000022100 Xpo7 ENSMUST00000228346 ENSMUSP00000154350 TRANSLATION protein_coding - - - 1088.0 0.0 1.8465 9.4 49.5 0.0 -4,-5 0.7741 33 10.688 MINOR ENSMUSG00000022100 Xpo7 ENSMUST00000226448 ENSMUSP00000153855 TRANSLATION protein_coding - - - 1057.0 0.0 1.8465 0.0 49.5 0.0 -4,-5 0.2033 32 8.0 MINOR ENSMUSG00000022100 Xpo7 ENSMUST00000226607 - NO_TRANSLATION retained_intron ENSMUSG00000022100 Xpo7 ENSMUST00000167242 ENSMUSP00000129504 TRANSLATION protein_coding - - 5 1088.0 0.0 1.8465 13.5 49.5 0.0 -4,-5 0.861 32 12.0 ALTERNATIVE:1 ENSMUSG00000022100 Xpo7 ENSMUST00000022696 ENSMUSP00000022696 TRANSLATION protein_coding - CCDS36974.1 1 1087.0 0.0 1.8465 13.5 49.5 0.0 -4,-5 1.0 33 12.0 PRINCIPAL:3 ENSMUSG00000022100 Xpo7 ENSMUST00000227550 - NO_TRANSLATION retained_intron ENSMUSG00000109446 Gm9195 ENSMUST00000208955 ENSMUSP00000146536 TRANSLATION protein_coding - - 5 2805.0 0.0 0.562 0.0 0.0 0.0 -4,-7 0.8681 - 6.0 PRINCIPAL:1 ENSMUSG00000022113 Trim52 ENSMUST00000194236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022113 Trim52 ENSMUST00000022708 ENSMUSP00000022708 TRANSLATION protein_coding - CCDS27323.1 - 233.0 6.0 0.0 0.0 52.8 0.0 -4,-6 0.9946 - 12.0 PRINCIPAL:1 ENSMUSG00000072571 Tmem253 ENSMUST00000227295 ENSMUSP00000154460 TRANSLATION protein_coding - - - 170.0 0.0 0.85 0.0 0.0 2.0 -4,-7 0.0216 - 4.08 MINOR ENSMUSG00000072571 Tmem253 ENSMUST00000226268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072571 Tmem253 ENSMUST00000228408 ENSMUSP00000153729 TRANSLATION protein_coding - - - 47.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0158 - 0.0 MINOR ENSMUSG00000072571 Tmem253 ENSMUST00000100638 ENSMUSP00000098203 TRANSLATION protein_coding - CCDS27049.1 1 204.0 0.0 1.25 5.9 0.0 4.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000096176 Trdd2 ENSMUST00000177564 ENSMUSP00000142955 TRANSLATION TR_D_gene start/stop - - 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000042323 Pbrm1 ENSMUST00000146325 ENSMUSP00000122805 TRANSLATION protein_coding stop - 1 931.0 2.0 13.09 0.0 390.3 0.0 -4,0 0.0044 15 -2.0 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000112092 ENSMUSP00000107721 TRANSLATION protein_coding - - 5 1652.0 2.0 17.59 0.0 619.5 0.0 -4,-7 0.2758 25 10.0 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000112095 ENSMUSP00000107724 TRANSLATION protein_coding - - 5 1634.0 2.0 17.59 2.0 612.6 0.0 -4,-7 0.2901 24 9.805 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000112098 ENSMUSP00000107727 TRANSLATION protein_coding - CCDS36851.1 5 1704.0 2.0 17.59 8.4 619.5 0.0 -4,-7 1.0 25 13.0 PRINCIPAL:2 ENSMUSG00000042323 Pbrm1 ENSMUST00000145497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042323 Pbrm1 ENSMUST00000112094 ENSMUSP00000107723 TRANSLATION protein_coding - - 5 1602.0 2.0 17.59 1.0 612.6 0.0 -4,-7 0.2292 24 9.4 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000052239 ENSMUSP00000060476 TRANSLATION protein_coding - - 5 1582.0 2.0 16.84 1.0 553.8 0.0 -4,-7 0.1094 24 7.3 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000144009 ENSMUSP00000123518 TRANSLATION protein_coding stop - 2 84.0 0.0 0.66 0.0 0.0 0.0 -4,0 0.0004 2 -2.0 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000135704 ENSMUSP00000115505 TRANSLATION protein_coding start/stop - 5 1085.0 2.0 16.26 0.0 492.8 0.0 -4,-5 0.0179 15 -2.0 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000022474 ENSMUSP00000022474 TRANSLATION protein_coding - - 5 1597.0 2.0 17.59 0.0 611.6 0.0 -4,-7 0.1605 24 9.4 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000090214 ENSMUSP00000087682 TRANSLATION protein_coding - - 5 1689.0 2.0 17.59 6.1 619.5 0.0 -4,-7 0.7278 25 12.067 ALTERNATIVE:1 ENSMUSG00000042323 Pbrm1 ENSMUST00000123678 ENSMUSP00000120549 TRANSLATION nonsense_mediated_decay - - 5 856.0 2.0 12.09 0.0 378.7 0.0 -4,-7 0.0036 14 -2.0 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000156628 ENSMUSP00000123546 TRANSLATION protein_coding stop - 5 1460.0 2.0 17.59 0.0 612.6 0.0 -4,-7 0.1632 21 -2.0 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000156407 - NO_TRANSLATION retained_intron ENSMUSG00000042323 Pbrm1 ENSMUST00000022471 ENSMUSP00000022471 TRANSLATION protein_coding - - 5 1582.0 2.0 17.59 2.0 611.6 0.0 -4,-7 0.2686 24 9.805 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000112106 ENSMUSP00000107734 TRANSLATION protein_coding stop - 2 91.0 0.0 0.99 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000042323 Pbrm1 ENSMUST00000136237 ENSMUSP00000119722 TRANSLATION nonsense_mediated_decay - - 5 860.0 2.0 12.09 0.0 378.7 0.0 -4,-7 0.0036 14 -2.0 MINOR ENSMUSG00000096329 Trav13d-4 ENSMUST00000103607 ENSMUSP00000100384 TRANSLATION TR_V_gene start/stop - - 88.0 0.0 1.0 0.0 55.0 0.0 -4,-5 0.0767 - -2.0 ALTERNATIVE:2 ENSMUSG00000096329 Trav13d-4 ENSMUST00000196079 ENSMUSP00000143340 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.0 0.0 55.4 0.0 4,-1 0.8247 - -2.0 PRINCIPAL:5 ENSMUSG00000105953 Trav15d-2-dv6d-2 ENSMUST00000199800 ENSMUSP00000143660 TRANSLATION TR_V_gene stop - - 117.0 0.0 1.0 0.0 61.8 0.0 3,-2 0.8234 - -2.0 PRINCIPAL:1 ENSMUSG00000036023 Parp2 ENSMUST00000226880 - NO_TRANSLATION retained_intron ENSMUSG00000036023 Parp2 ENSMUST00000228872 - NO_TRANSLATION retained_intron ENSMUSG00000036023 Parp2 ENSMUST00000228672 - NO_TRANSLATION retained_intron ENSMUSG00000036023 Parp2 ENSMUST00000036126 ENSMUSP00000048877 TRANSLATION protein_coding - CCDS27025.1 1 559.0 2.0 12.75 0.1 487.0 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000036023 Parp2 ENSMUST00000228833 - NO_TRANSLATION retained_intron ENSMUSG00000036023 Parp2 ENSMUST00000227705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036023 Parp2 ENSMUST00000228624 - NO_TRANSLATION retained_intron ENSMUSG00000036023 Parp2 ENSMUST00000227810 ENSMUSP00000153963 TRANSLATION nonsense_mediated_decay start - - 42.0 0.0 0.75 0.0 30.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000091418 Gm3164 ENSMUST00000249395 ENSMUSP00000159832 TRANSLATION protein_coding - - - 227.0 0.0 3.0 0.0 75.2 0.0 -4,-5 0.7384 - 12.0 PRINCIPAL:1 ENSMUSG00000105393 Trav7d-5 ENSMUST00000197128 ENSMUSP00000143500 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.4 0.0 60.4 0.0 3,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000098557 Kctd12 ENSMUST00000184744 ENSMUSP00000139261 TRANSLATION protein_coding - CCDS70611.1 - 327.0 0.0 0.48 11.4 56.8 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000098557 Kctd12 ENSMUST00000183756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094784 Gm8122 ENSMUST00000165988 ENSMUSP00000131304 TRANSLATION protein_coding start - 5 213.0 0.0 3.0 0.0 90.0 0.0 -4,-6 0.7353 - -2.0 PRINCIPAL:1 ENSMUSG00000055717 Slain1 ENSMUST00000160805 ENSMUSP00000125128 TRANSLATION protein_coding start - 5 532.0 0.0 0.0 0.0 571.0 0.0 -4,-7 0.1315 8 -2.0 MINOR ENSMUSG00000055717 Slain1 ENSMUST00000069443 ENSMUSP00000070592 TRANSLATION protein_coding - CCDS27316.1 1 579.0 0.0 0.0 0.0 452.1 0.0 -4,-5 0.4936 7 0.0 PRINCIPAL:1 ENSMUSG00000055717 Slain1 ENSMUST00000162818 ENSMUSP00000123742 TRANSLATION protein_coding start/stop - 3 214.0 0.0 0.0 0.0 239.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000055717 Slain1 ENSMUST00000159456 ENSMUSP00000125685 TRANSLATION protein_coding start - 5 420.0 0.0 0.0 0.0 459.2 0.0 -4,-7 0.0033 5 -2.0 MINOR ENSMUSG00000096254 Or4l15 ENSMUST00000213390 ENSMUSP00000149110 TRANSLATION protein_coding - CCDS27000.1 5 309.0 0.0 1.0 8.7 144.5 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096254 Or4l15 ENSMUST00000075030 ENSMUSP00000074546 TRANSLATION protein_coding - CCDS27000.1 - 309.0 0.0 1.0 8.7 144.5 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095370 Trav6n-7 ENSMUST00000179607 ENSMUSP00000137407 TRANSLATION TR_V_gene stop - - 116.0 0.0 1.0 0.0 45.2 0.0 3,-1 0.8224 - -2.0 PRINCIPAL:1 ENSMUSG00000090512 Gm3424 ENSMUST00000164585 ENSMUSP00000127795 TRANSLATION protein_coding - - 5 263.0 0.0 4.0 0.0 72.6 0.0 -4,-5 0.7338 - 12.0 PRINCIPAL:1 ENSMUSG00000090512 Gm3424 ENSMUST00000249584 ENSMUSP00000159798 TRANSLATION protein_coding - - - 204.0 0.0 3.0 0.0 72.6 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000025277 Abhd6 ENSMUST00000166497 ENSMUSP00000129169 TRANSLATION protein_coding - CCDS26808.1 1 336.0 7.0 7.03 26.8 65.5 0.0 -3,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025277 Abhd6 ENSMUST00000225234 ENSMUSP00000153068 TRANSLATION protein_coding - - - 289.0 7.0 6.5 3.2 65.5 0.0 -4,-6 0.1415 13 17.278 MINOR ENSMUSG00000095560 Trav14d-2 ENSMUST00000196802 ENSMUSP00000142348 TRANSLATION TR_V_gene stop - - 121.0 0.0 1.43 0.0 63.3 0.0 3,-1 0.8217 - -2.0 PRINCIPAL:5 ENSMUSG00000095560 Trav14d-2 ENSMUST00000103597 ENSMUSP00000100374 TRANSLATION TR_V_gene start/stop - - 92.0 0.0 1.0 0.0 63.3 0.0 -4,-5 0.0225 - -2.0 ALTERNATIVE:2 ENSMUSG00000094811 Gm21103 ENSMUST00000112737 ENSMUSP00000108357 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 72.1 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000094811 Gm21103 ENSMUST00000170923 ENSMUSP00000131334 TRANSLATION protein_coding - - 5 267.0 0.0 4.0 0.0 72.1 0.0 -4,-5 0.7383 - 12.0 PRINCIPAL:1 ENSMUSG00000076759 Trav2 ENSMUST00000196939 ENSMUSP00000142736 TRANSLATION TR_V_gene stop - - 109.0 0.0 1.0 1.0 39.9 0.0 4,-1 0.8285 - -2.0 PRINCIPAL:1 ENSMUSG00000109835 Or4k2 ENSMUST00000215779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109835 Or4k2 ENSMUST00000051453 ENSMUSP00000060325 TRANSLATION protein_coding - CCDS27006.1 - 318.0 0.0 1.0 9.9 147.9 5.0 -4,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000109835 Or4k2 ENSMUST00000205837 ENSMUSP00000145742 TRANSLATION protein_coding - - - 317.0 0.0 1.0 9.9 147.9 5.0 -4,-5 0.8613 - 11.0 ALTERNATIVE:1 ENSMUSG00000115726 Gm30083 ENSMUST00000227795 ENSMUSP00000153809 TRANSLATION protein_coding - - - 573.0 0.0 5.34 0.0 124.7 0.0 2,-3 0.8421 - 12.0 PRINCIPAL:1 ENSMUSG00000115726 Gm30083 ENSMUST00000227523 - NO_TRANSLATION retained_intron ENSMUSG00000022112 Gpc5 ENSMUST00000022707 ENSMUSP00000022707 TRANSLATION protein_coding - CCDS27329.1 1 572.0 0.0 2.44 5.4 573.6 0.0 3,-2 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000022112 Gpc5 ENSMUST00000176912 ENSMUSP00000135085 TRANSLATION protein_coding - - 1 645.0 0.0 2.44 0.0 573.6 0.0 -4,-1 0.0852 9 12.0 MINOR ENSMUSG00000022112 Gpc5 ENSMUST00000176993 - NO_TRANSLATION retained_intron ENSMUSG00000022112 Gpc5 ENSMUST00000175665 ENSMUSP00000135857 TRANSLATION protein_coding - - 1 498.0 0.0 1.3 0.0 451.7 0.0 -4,-1 0.0012 8 3.198 MINOR ENSMUSG00000045875 Adra1a ENSMUST00000161339 ENSMUSP00000125354 TRANSLATION protein_coding - CCDS27223.1 1 466.0 0.0 0.6 13.8 266.0 9.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000045875 Adra1a ENSMUST00000159068 ENSMUSP00000124570 TRANSLATION protein_coding - CCDS27223.1 2 466.0 0.0 0.6 13.8 266.0 9.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000045875 Adra1a ENSMUST00000160647 - NO_TRANSLATION retained_intron ENSMUSG00000045875 Adra1a ENSMUST00000159365 ENSMUSP00000124322 TRANSLATION protein_coding - CCDS70600.1 1 427.0 0.0 0.6 5.3 266.0 9.0 -4,-7 0.5895 4 13.344 MINOR ENSMUSG00000045875 Adra1a ENSMUST00000054661 ENSMUSP00000053703 TRANSLATION protein_coding - CCDS27223.1 1 466.0 0.0 0.6 13.8 266.0 9.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000045875 Adra1a ENSMUST00000225182 ENSMUSP00000153103 TRANSLATION protein_coding - - - 295.0 0.0 0.4 0.0 229.4 8.0 -4,-7 0.0084 2 7.806 MINOR ENSMUSG00000040380 Cbln3 ENSMUST00000063871 ENSMUSP00000070494 TRANSLATION protein_coding - CCDS27133.1 1 197.0 0.0 2.4 0.4 89.4 0.0 3,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000096827 Trav14n-1 ENSMUST00000177578 ENSMUSP00000137036 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.1 0.0 66.6 0.0 -3,-5 0.0241 - -2.0 ALTERNATIVE:2 ENSMUSG00000096827 Trav14n-1 ENSMUST00000196639 ENSMUSP00000143569 TRANSLATION TR_V_gene stop - - 121.0 0.0 1.43 0.0 66.6 0.0 3,-1 0.8217 - -2.0 PRINCIPAL:5 ENSMUSG00000040752 Myh6 ENSMUST00000228731 ENSMUSP00000153961 TRANSLATION protein_coding start - - 162.0 0.0 3.0 0.0 74.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040752 Myh6 ENSMUST00000227905 - NO_TRANSLATION retained_intron ENSMUSG00000040752 Myh6 ENSMUST00000111456 ENSMUSP00000107083 TRANSLATION protein_coding stop - 3 63.0 0.0 1.0 0.0 41.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040752 Myh6 ENSMUST00000226297 ENSMUSP00000154634 TRANSLATION protein_coding - CCDS36927.1 - 1938.0 16.0 35.63 30.7 1570.0 0.0 -4,-5 1.0 29 22.0 PRINCIPAL:1 ENSMUSG00000040752 Myh6 ENSMUST00000124930 ENSMUSP00000115615 TRANSLATION protein_coding stop - 1 94.0 0.0 1.75 0.0 58.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040752 Myh6 ENSMUST00000081857 ENSMUSP00000080538 TRANSLATION protein_coding - CCDS36927.1 1 1938.0 16.0 35.63 30.7 1570.0 0.0 -4,-5 1.0 29 22.0 PRINCIPAL:1 ENSMUSG00000040752 Myh6 ENSMUST00000131892 - NO_TRANSLATION retained_intron ENSMUSG00000076912 Traj17 ENSMUST00000103724 ENSMUSP00000142713 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021820 Camk2g ENSMUST00000225463 ENSMUSP00000153453 TRANSLATION protein_coding start/stop - - 168.0 0.0 3.75 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000021820 Camk2g ENSMUST00000223712 ENSMUSP00000153471 TRANSLATION protein_coding start/stop - - 241.0 1.0 5.59 0.0 69.7 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000021820 Camk2g ENSMUST00000225660 - NO_TRANSLATION retained_intron ENSMUSG00000021820 Camk2g ENSMUST00000225328 ENSMUSP00000152992 TRANSLATION protein_coding start/stop - - 190.0 4.0 4.08 0.0 185.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021820 Camk2g ENSMUST00000225635 - NO_TRANSLATION retained_intron ENSMUSG00000021820 Camk2g ENSMUST00000223863 ENSMUSP00000153007 TRANSLATION nonsense_mediated_decay start - - 71.0 4.0 2.11 0.0 83.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021820 Camk2g ENSMUST00000071816 ENSMUSP00000071720 TRANSLATION protein_coding - CCDS26857.1 1 529.0 22.0 15.869 16.3 451.9 2.0 -4,-5 0.9309 8 16.232 ALTERNATIVE:1 ENSMUSG00000021820 Camk2g ENSMUST00000224245 - NO_TRANSLATION retained_intron ENSMUSG00000021820 Camk2g ENSMUST00000100837 ENSMUSP00000098398 TRANSLATION protein_coding - CCDS26856.1 1 495.0 22.0 15.62 22.6 451.9 2.0 -4,-5 1.0 8 16.902 PRINCIPAL:4 ENSMUSG00000021820 Camk2g ENSMUST00000080440 ENSMUSP00000079298 TRANSLATION protein_coding - CCDS26855.1 1 518.0 22.0 15.77 18.3 451.9 2.0 -4,-5 0.9471 8 16.406 ALTERNATIVE:1 ENSMUSG00000021820 Camk2g ENSMUST00000225609 ENSMUSP00000152903 TRANSLATION protein_coding start/stop - - 224.0 1.0 5.889 0.0 63.7 2.0 -3,-5 0.0016 6 -2.0 MINOR ENSMUSG00000021820 Camk2g ENSMUST00000224887 ENSMUSP00000153165 TRANSLATION protein_coding start/stop - - 274.0 4.0 7.19 0.0 176.9 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000021820 Camk2g ENSMUST00000224804 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021820 Camk2g ENSMUST00000225958 - NO_TRANSLATION retained_intron ENSMUSG00000021820 Camk2g ENSMUST00000225800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021820 Camk2g ENSMUST00000224566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021820 Camk2g ENSMUST00000226630 ENSMUSP00000154158 TRANSLATION protein_coding - - - 565.0 22.0 16.169 6.1 450.4 2.0 -4,-5 0.3194 11 14.944 MINOR ENSMUSG00000034689 Ccdc202 ENSMUST00000228913 ENSMUSP00000153934 TRANSLATION protein_coding - CCDS27307.1 - 274.0 0.0 1.0 0.1 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000034689 Ccdc202 ENSMUST00000045892 ENSMUSP00000044028 TRANSLATION protein_coding - CCDS27307.1 1 274.0 0.0 1.0 0.1 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000022021 Diaph3 ENSMUST00000226134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022021 Diaph3 ENSMUST00000226745 ENSMUSP00000154037 TRANSLATION protein_coding - - - 82.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 0.0 MINOR ENSMUSG00000022021 Diaph3 ENSMUST00000228000 ENSMUSP00000153711 TRANSLATION non_stop_decay stop - - 656.0 0.0 8.9 0.0 381.8 0.0 -4,-7 0.0009 6 -2.0 MINOR ENSMUSG00000022021 Diaph3 ENSMUST00000226254 ENSMUSP00000154692 TRANSLATION protein_coding - - - 82.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 0.0 MINOR ENSMUSG00000022021 Diaph3 ENSMUST00000226492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022021 Diaph3 ENSMUST00000168889 ENSMUSP00000129420 TRANSLATION protein_coding - CCDS36990.1 1 1171.0 0.0 17.5 0.1 793.3 0.0 -4,-7 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000022021 Diaph3 ENSMUST00000227638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022021 Diaph3 ENSMUST00000227666 - NO_TRANSLATION retained_intron ENSMUSG00000022019 Tdrd3 ENSMUST00000170712 ENSMUSP00000126212 TRANSLATION protein_coding start/stop - 3 212.0 0.0 2.75 0.0 76.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000022019 Tdrd3 ENSMUST00000168275 ENSMUSP00000129019 TRANSLATION protein_coding - CCDS27305.2 1 743.0 5.0 6.25 10.5 140.4 0.0 -4,-5 1.0 14 19.34 PRINCIPAL:1 ENSMUSG00000022019 Tdrd3 ENSMUST00000227304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022019 Tdrd3 ENSMUST00000170865 ENSMUSP00000126189 TRANSLATION protein_coding - - 1 737.0 5.0 5.75 0.0 140.4 0.0 -4,-5 0.0966 14 15.338 MINOR ENSMUSG00000022019 Tdrd3 ENSMUST00000169504 ENSMUSP00000131542 TRANSLATION protein_coding - CCDS56972.1 1 716.0 5.0 6.58 0.0 138.6 0.0 -4,-5 0.1873 14 16.892 MINOR ENSMUSG00000022019 Tdrd3 ENSMUST00000163714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090539 Gm9602 ENSMUST00000163325 ENSMUSP00000126151 TRANSLATION protein_coding - - 1 205.0 0.0 3.0 0.1 85.9 0.0 -4,-5 0.738 - 12.0 PRINCIPAL:1 ENSMUSG00000017485 Top2b ENSMUST00000017629 ENSMUSP00000017629 TRANSLATION protein_coding - CCDS26833.1 1 1612.0 22.0 25.74 1.5 894.7 0.0 -4,-5 1.0 37 19.0 PRINCIPAL:1 ENSMUSG00000017485 Top2b ENSMUST00000161693 ENSMUSP00000123992 TRANSLATION protein_coding start/stop - 5 348.0 0.0 2.85 0.0 40.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000017485 Top2b ENSMUST00000163032 - NO_TRANSLATION retained_intron ENSMUSG00000017485 Top2b ENSMUST00000159987 - NO_TRANSLATION retained_intron ENSMUSG00000017485 Top2b ENSMUST00000224695 - NO_TRANSLATION retained_intron ENSMUSG00000017485 Top2b ENSMUST00000159302 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000017485 Top2b ENSMUST00000160501 ENSMUSP00000124889 TRANSLATION protein_coding start/stop - 3 230.0 0.0 3.6 0.0 153.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000017485 Top2b ENSMUST00000224460 - NO_TRANSLATION retained_intron ENSMUSG00000022089 Bin3 ENSMUST00000227841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022089 Bin3 ENSMUST00000228049 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022089 Bin3 ENSMUST00000022680 ENSMUSP00000022680 TRANSLATION protein_coding - CCDS27247.1 1 253.0 0.0 6.05 34.9 87.8 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000022089 Bin3 ENSMUST00000226385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022089 Bin3 ENSMUST00000228717 ENSMUSP00000154413 TRANSLATION nonsense_mediated_decay - - - 39.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000012405 Rpl15 ENSMUST00000112598 ENSMUSP00000108217 TRANSLATION protein_coding - CCDS36812.1 1 204.0 0.0 3.0 36.9 326.7 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000012405 Rpl15 ENSMUST00000224196 - NO_TRANSLATION retained_intron ENSMUSG00000012405 Rpl15 ENSMUST00000080281 ENSMUSP00000079163 TRANSLATION protein_coding - CCDS36812.1 1 204.0 0.0 3.0 36.9 326.7 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000012405 Rpl15 ENSMUST00000100799 ENSMUSP00000098362 TRANSLATION protein_coding - CCDS36812.1 2 204.0 0.0 3.0 36.9 326.7 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000012405 Rpl15 ENSMUST00000079419 ENSMUSP00000078388 TRANSLATION protein_coding - CCDS36812.1 2 204.0 0.0 3.0 36.9 326.7 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000012405 Rpl15 ENSMUST00000147121 ENSMUSP00000119852 TRANSLATION protein_coding stop - 5 107.0 0.0 2.0 0.0 168.3 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000050222 Il17d ENSMUST00000089494 ENSMUSP00000086921 TRANSLATION protein_coding - CCDS49507.1 1 205.0 0.0 1.8 3.0 94.1 0.0 3,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000094220 Trav6-3 ENSMUST00000180549 ENSMUSP00000137964 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 40.1 0.0 3,-1 0.8219 - -2.0 PRINCIPAL:5 ENSMUSG00000094220 Trav6-3 ENSMUST00000183604 ENSMUSP00000138968 TRANSLATION TR_V_gene start/stop - - 101.0 0.0 1.0 0.0 40.1 0.0 -4,-6 0.0653 - -2.0 ALTERNATIVE:2 ENSMUSG00000096749 Trdd1 ENSMUST00000196221 ENSMUSP00000142546 TRANSLATION TR_D_gene start/stop - - 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000096749 Trdd1 ENSMUST00000179664 - NO_TRANSLATION processed_transcript ENSMUSG00000076831 Trav8-1 ENSMUST00000103643 ENSMUSP00000100420 TRANSLATION TR_V_gene stop - - 109.0 0.0 1.4 0.0 64.0 0.0 4,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000047894 Ang2 ENSMUST00000228835 ENSMUSP00000154100 TRANSLATION protein_coding - CCDS27040.1 - 145.0 5.0 1.0 3.7 117.4 0.0 4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000047894 Ang2 ENSMUST00000051274 ENSMUSP00000062902 TRANSLATION protein_coding - CCDS27040.1 - 145.0 5.0 1.0 3.7 117.4 0.0 4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033083 Tbc1d4 ENSMUST00000161304 - NO_TRANSLATION retained_intron ENSMUSG00000033083 Tbc1d4 ENSMUST00000159951 ENSMUSP00000124511 TRANSLATION protein_coding start - 5 957.0 2.0 6.32 0.0 305.7 0.0 -4,-5 0.0628 16 -2.0 MINOR ENSMUSG00000033083 Tbc1d4 ENSMUST00000159484 - NO_TRANSLATION retained_intron ENSMUSG00000033083 Tbc1d4 ENSMUST00000162617 ENSMUSP00000124909 TRANSLATION protein_coding - - 5 1306.0 2.0 6.32 3.2 332.3 0.0 -4,-5 0.6563 29 10.958 ALTERNATIVE:2 ENSMUSG00000033083 Tbc1d4 ENSMUST00000159664 ENSMUSP00000124734 TRANSLATION nonsense_mediated_decay start - 1 99.0 3.0 0.32 0.0 0.0 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000033083 Tbc1d4 ENSMUST00000100340 ENSMUSP00000097913 TRANSLATION protein_coding stop - 1 839.0 2.0 0.72 0.0 58.1 0.0 -4,-5 0.007 22 -2.0 MINOR ENSMUSG00000033083 Tbc1d4 ENSMUST00000159668 - NO_TRANSLATION retained_intron ENSMUSG00000033083 Tbc1d4 ENSMUST00000160297 - NO_TRANSLATION retained_intron ENSMUSG00000033083 Tbc1d4 ENSMUST00000161991 ENSMUSP00000125509 TRANSLATION protein_coding - CCDS49556.1 5 1243.0 2.0 6.32 3.3 332.3 0.0 -4,-5 1.0 27 11.001 PRINCIPAL:2 ENSMUSG00000033083 Tbc1d4 ENSMUST00000160473 - NO_TRANSLATION retained_intron ENSMUSG00000076877 Traj56 ENSMUST00000103689 ENSMUSP00000142565 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000022220 Adcy4 ENSMUST00000226361 - NO_TRANSLATION retained_intron ENSMUSG00000022220 Adcy4 ENSMUST00000228933 - NO_TRANSLATION retained_intron ENSMUSG00000022220 Adcy4 ENSMUST00000002398 ENSMUSP00000002398 TRANSLATION protein_coding - CCDS27130.1 1 1077.0 9.0 8.916 8.2 585.3 11.0 -4,-7 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000022220 Adcy4 ENSMUST00000170223 ENSMUSP00000130530 TRANSLATION protein_coding - CCDS27130.1 1 1077.0 9.0 8.916 8.2 585.3 11.0 -4,-7 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000022220 Adcy4 ENSMUST00000226575 - NO_TRANSLATION retained_intron ENSMUSG00000022220 Adcy4 ENSMUST00000227031 ENSMUSP00000153739 TRANSLATION protein_coding stop - - 49.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0005 - -2.0 MINOR ENSMUSG00000076796 Trav16d-dv11 ENSMUST00000103606 ENSMUSP00000100383 TRANSLATION TR_V_gene stop - - 117.0 0.0 1.1 0.0 59.1 0.0 1,-2 0.8234 - -2.0 PRINCIPAL:1 ENSMUSG00000044819 Oxgr1 ENSMUST00000058213 ENSMUSP00000055137 TRANSLATION protein_coding - CCDS27340.1 1 337.0 0.0 0.8 11.8 117.8 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022227 Mcpt1 ENSMUST00000022836 ENSMUSP00000022836 TRANSLATION protein_coding - CCDS27137.1 1 246.0 6.0 4.0 0.1 209.0 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000021916 Glt8d1 ENSMUST00000228718 - NO_TRANSLATION retained_intron ENSMUSG00000021916 Glt8d1 ENSMUST00000022476 ENSMUSP00000022476 TRANSLATION protein_coding - CCDS26904.1 1 371.0 3.0 0.096 0.0 226.2 0.0 -1,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000021916 Glt8d1 ENSMUST00000228255 - NO_TRANSLATION retained_intron ENSMUSG00000021916 Glt8d1 ENSMUST00000168584 ENSMUSP00000129323 TRANSLATION protein_coding - CCDS26904.1 1 371.0 3.0 0.096 0.0 226.2 0.0 -1,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000021916 Glt8d1 ENSMUST00000226959 - NO_TRANSLATION retained_intron ENSMUSG00000021916 Glt8d1 ENSMUST00000228914 - NO_TRANSLATION retained_intron ENSMUSG00000021916 Glt8d1 ENSMUST00000226271 - NO_TRANSLATION retained_intron ENSMUSG00000021916 Glt8d1 ENSMUST00000227783 - NO_TRANSLATION retained_intron ENSMUSG00000021916 Glt8d1 ENSMUST00000226348 - NO_TRANSLATION retained_intron ENSMUSG00000021916 Glt8d1 ENSMUST00000226378 ENSMUSP00000154591 TRANSLATION protein_coding stop - - 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000092152 Gm17026 ENSMUST00000166674 ENSMUSP00000129050 TRANSLATION protein_coding start - 1 213.0 0.0 3.0 0.0 91.0 0.0 -4,-7 0.7393 - -2.0 PRINCIPAL:1 ENSMUSG00000021895 Arhgef3 ENSMUST00000224981 ENSMUSP00000153124 TRANSLATION protein_coding - - - 524.0 0.0 6.3 12.3 129.8 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000021895 Arhgef3 ENSMUST00000225949 ENSMUSP00000153396 TRANSLATION protein_coding - - - 551.0 0.0 6.3 3.3 129.8 0.0 -4,-6 0.3093 2 12.612 MINOR ENSMUSG00000021895 Arhgef3 ENSMUST00000225494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021895 Arhgef3 ENSMUST00000049206 ENSMUSP00000046486 TRANSLATION protein_coding - CCDS26886.1 1 531.0 0.0 6.3 8.1 129.8 0.0 -4,-2 0.9982 2 13.884 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000224232 ENSMUSP00000153291 TRANSLATION protein_coding start - - 1171.0 0.0 20.896 0.9 199.5 21.0 -4,-7 0.3864 17 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000224465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063142 Kcnma1 ENSMUST00000223655 ENSMUSP00000153362 TRANSLATION protein_coding start - - 1175.0 0.0 20.896 0.0 199.5 21.0 -4,-7 0.4472 17 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000188991 ENSMUSP00000140751 TRANSLATION protein_coding - CCDS79276.1 1 1236.0 0.0 20.896 1.0 199.5 21.0 -4,-5 0.5226 17 8.0 ALTERNATIVE:2 ENSMUSG00000063142 Kcnma1 ENSMUST00000190044 ENSMUSP00000140033 TRANSLATION protein_coding - CCDS79275.1 1 1178.0 0.0 20.83 1.0 199.5 21.0 -4,-5 1.0 18 7.868 PRINCIPAL:2 ENSMUSG00000063142 Kcnma1 ENSMUST00000223727 ENSMUSP00000153158 TRANSLATION protein_coding start - - 1112.0 0.0 20.83 0.0 199.5 21.0 -4,-7 0.2408 18 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000190985 ENSMUSP00000140154 TRANSLATION nonsense_mediated_decay - - 1 634.0 0.0 15.83 0.0 203.4 21.0 -4,-7 0.0602 7 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000224285 ENSMUSP00000153316 TRANSLATION protein_coding start - - 1113.0 0.0 20.83 0.0 195.2 17.0 -4,-7 0.1405 18 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000163322 ENSMUSP00000128553 TRANSLATION protein_coding start - 5 1053.0 0.0 19.83 0.0 195.2 13.0 -4,-6 0.0548 18 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000177634 ENSMUSP00000136447 TRANSLATION protein_coding start - 5 1135.0 0.0 19.08 0.0 199.5 17.0 -4,-6 0.1584 20 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000065788 ENSMUSP00000065293 TRANSLATION protein_coding start - 5 1108.0 0.0 19.83 0.0 199.5 17.0 -4,-6 0.1619 18 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000225471 ENSMUSP00000153083 TRANSLATION protein_coding start - - 1142.0 0.0 20.83 0.0 199.5 21.0 -4,-7 0.2675 17 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000224025 ENSMUSP00000153078 TRANSLATION protein_coding start - - 1185.0 0.0 20.83 0.0 199.5 21.0 -4,-7 0.3567 18 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000224787 ENSMUSP00000152999 TRANSLATION protein_coding start - - 1115.0 0.0 20.08 0.0 199.4 19.0 -4,-5 0.1826 16 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000212576 ENSMUSP00000148692 TRANSLATION protein_coding stop - 5 332.0 0.0 7.0 0.0 54.4 11.0 -4,-6 0.0033 3 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000179836 ENSMUSP00000137141 TRANSLATION protein_coding start/stop - 5 1059.0 0.0 18.896 0.0 108.4 17.0 -4,-6 0.0207 17 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000212542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063142 Kcnma1 ENSMUST00000225305 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063142 Kcnma1 ENSMUST00000225315 ENSMUSP00000153584 TRANSLATION protein_coding start - - 1142.0 0.0 20.83 0.0 199.5 21.0 -4,-7 0.2675 17 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000223749 ENSMUSP00000153216 TRANSLATION protein_coding start - - 1113.0 0.0 20.83 0.0 199.5 21.0 -4,-7 0.2485 18 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000224468 ENSMUSP00000153312 TRANSLATION protein_coding - - - 1242.0 0.0 20.896 0.0 199.5 21.0 -4,-5 0.2637 17 8.0 ALTERNATIVE:2 ENSMUSG00000063142 Kcnma1 ENSMUST00000190339 ENSMUSP00000141143 TRANSLATION protein_coding - - 5 191.0 0.0 1.0 0.0 0.0 4.0 -4,-5 0.0036 - 0.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000145596 ENSMUSP00000153247 TRANSLATION protein_coding - CCDS79277.1 - 1209.0 0.0 20.08 1.0 199.5 21.0 -4,-5 0.5033 20 6.368 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000224933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063142 Kcnma1 ENSMUST00000225431 ENSMUSP00000153670 TRANSLATION protein_coding start - - 1165.0 0.0 20.83 0.0 199.5 21.0 -4,-7 0.3103 19 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000224077 ENSMUSP00000153214 TRANSLATION protein_coding - - - 1178.0 0.0 20.896 0.0 199.5 21.0 -4,-7 0.608 17 8.0 ALTERNATIVE:2 ENSMUSG00000063142 Kcnma1 ENSMUST00000226051 ENSMUSP00000153356 TRANSLATION protein_coding stop - - 477.0 0.0 13.5 0.0 113.8 17.0 -2,-5 0.0058 6 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000188210 ENSMUSP00000141069 TRANSLATION protein_coding start - 1 1192.0 0.0 20.08 0.0 199.5 21.0 -4,-7 0.2636 21 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000188285 ENSMUSP00000140275 TRANSLATION protein_coding - CCDS79278.1 1 1239.0 0.0 20.896 1.0 199.5 21.0 -4,-5 0.5191 17 8.0 ALTERNATIVE:2 ENSMUSG00000063142 Kcnma1 ENSMUST00000225794 ENSMUSP00000153254 TRANSLATION nonsense_mediated_decay start - - 357.0 0.0 8.25 0.0 67.7 21.0 -4,-7 0.0043 2 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000225556 ENSMUSP00000152959 TRANSLATION protein_coding start - - 1119.0 0.0 19.896 0.0 108.4 21.0 -4,-7 0.0649 17 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000223847 - NO_TRANSLATION retained_intron ENSMUSG00000063142 Kcnma1 ENSMUST00000179097 ENSMUSP00000136568 TRANSLATION protein_coding start - 5 1132.0 0.0 19.08 0.0 199.5 17.0 -4,-6 0.1559 21 -2.0 MINOR ENSMUSG00000063142 Kcnma1 ENSMUST00000224812 ENSMUSP00000153527 TRANSLATION protein_coding start - - 1146.0 0.0 20.83 0.0 199.5 21.0 -4,-7 0.2773 17 -2.0 MINOR ENSMUSG00000049295 Zfp219 ENSMUST00000228747 ENSMUSP00000154768 TRANSLATION protein_coding stop - - 141.0 8.0 2.173 0.0 39.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049295 Zfp219 ENSMUST00000226474 - NO_TRANSLATION retained_intron ENSMUSG00000049295 Zfp219 ENSMUST00000228162 ENSMUSP00000154698 TRANSLATION protein_coding stop - - 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000049295 Zfp219 ENSMUST00000067549 ENSMUSP00000068184 TRANSLATION protein_coding - CCDS36916.1 1 726.0 35.0 3.413 2.4 119.8 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:2 ENSMUSG00000049295 Zfp219 ENSMUST00000226554 ENSMUSP00000154096 TRANSLATION protein_coding stop - - 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.008 - -2.0 MINOR ENSMUSG00000049295 Zfp219 ENSMUST00000166169 ENSMUSP00000126854 TRANSLATION protein_coding - CCDS36916.1 1 726.0 35.0 3.413 2.4 119.8 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:2 ENSMUSG00000049295 Zfp219 ENSMUST00000228580 ENSMUSP00000153966 TRANSLATION protein_coding - - - 681.0 35.0 3.113 2.3 119.8 0.0 -4,-7 0.4671 9 14.329 ALTERNATIVE:2 ENSMUSG00000049295 Zfp219 ENSMUST00000228051 ENSMUSP00000153742 TRANSLATION protein_coding stop - - 95.0 6.0 1.1 0.0 19.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049295 Zfp219 ENSMUST00000226964 ENSMUSP00000154448 TRANSLATION protein_coding stop - - 201.0 13.0 2.653 0.0 39.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049295 Zfp219 ENSMUST00000226527 ENSMUSP00000154200 TRANSLATION protein_coding stop - - 131.0 8.0 1.9 0.0 39.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049295 Zfp219 ENSMUST00000227420 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049295 Zfp219 ENSMUST00000226522 ENSMUSP00000154709 TRANSLATION protein_coding - CCDS36916.1 - 726.0 35.0 3.413 2.4 119.8 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:2 ENSMUSG00000049295 Zfp219 ENSMUST00000226605 ENSMUSP00000154367 TRANSLATION protein_coding stop - - 109.0 7.0 1.6 0.0 35.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043702 Pde12 ENSMUST00000052932 ENSMUSP00000059666 TRANSLATION protein_coding - CCDS26882.1 1 608.0 0.0 2.75 9.4 62.7 0.0 -4,0 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000021994 Wnt5a ENSMUST00000146192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021994 Wnt5a ENSMUST00000134766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021994 Wnt5a ENSMUST00000151929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021994 Wnt5a ENSMUST00000063465 ENSMUSP00000064878 TRANSLATION protein_coding - CCDS26888.1 1 380.0 0.0 3.0 16.9 405.4 0.0 -3,-5 1.0 4 12.0 PRINCIPAL:4 ENSMUSG00000021994 Wnt5a ENSMUST00000134163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021994 Wnt5a ENSMUST00000112272 ENSMUSP00000107891 TRANSLATION protein_coding - CCDS56946.1 1 360.0 0.0 3.0 13.2 405.4 0.0 2,-2 0.9146 4 11.068 ALTERNATIVE:1 ENSMUSG00000022185 Acin1 ENSMUST00000136909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022185 Acin1 ENSMUST00000150371 ENSMUSP00000118069 TRANSLATION protein_coding - CCDS27098.2 1 634.0 0.0 1.0 0.7 92.1 0.0 -4,-5 0.1901 15 6.5 MINOR ENSMUSG00000022185 Acin1 ENSMUST00000022794 ENSMUSP00000022794 TRANSLATION protein_coding - - 5 580.0 0.0 1.0 5.1 92.1 0.0 -4,-5 0.8154 15 8.5 ALTERNATIVE:1 ENSMUSG00000022185 Acin1 ENSMUST00000123875 ENSMUSP00000117210 TRANSLATION protein_coding stop - 5 221.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0009 4 -2.0 MINOR ENSMUSG00000022185 Acin1 ENSMUST00000141453 ENSMUSP00000116664 TRANSLATION protein_coding - CCDS56956.1 1 552.0 0.0 1.0 0.0 92.1 0.0 -4,-5 0.1801 14 6.5 MINOR ENSMUSG00000022185 Acin1 ENSMUST00000133706 - NO_TRANSLATION retained_intron ENSMUSG00000022185 Acin1 ENSMUST00000134808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022185 Acin1 ENSMUST00000147714 ENSMUSP00000119080 TRANSLATION protein_coding start - 1 1272.0 0.0 1.0 0.0 124.9 0.0 -4,-5 0.3694 29 -2.0 MINOR ENSMUSG00000022185 Acin1 ENSMUST00000138321 ENSMUSP00000119326 TRANSLATION protein_coding start - 2 141.0 0.0 1.0 0.0 81.4 0.0 -4,-2 0.0358 - -2.0 MINOR ENSMUSG00000022185 Acin1 ENSMUST00000129700 - NO_TRANSLATION retained_intron ENSMUSG00000022185 Acin1 ENSMUST00000022793 ENSMUSP00000022793 TRANSLATION protein_coding - CCDS27097.1 1 1338.0 0.0 1.0 0.1 124.9 0.0 -4,-7 0.7246 30 8.0 ALTERNATIVE:2 ENSMUSG00000022185 Acin1 ENSMUST00000152773 - NO_TRANSLATION retained_intron ENSMUSG00000022185 Acin1 ENSMUST00000124271 - NO_TRANSLATION retained_intron ENSMUSG00000022185 Acin1 ENSMUST00000167495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022185 Acin1 ENSMUST00000137763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022185 Acin1 ENSMUST00000111484 ENSMUSP00000107109 TRANSLATION protein_coding - - 5 1298.0 0.0 1.0 0.1 124.9 0.0 -4,-7 0.458 30 8.0 ALTERNATIVE:2 ENSMUSG00000022185 Acin1 ENSMUST00000167015 ENSMUSP00000125776 TRANSLATION protein_coding - CCDS49492.1 1 581.0 0.0 1.0 5.1 92.1 0.0 -4,-5 1.0 15 8.5 PRINCIPAL:4 ENSMUSG00000022185 Acin1 ENSMUST00000170299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022185 Acin1 ENSMUST00000132242 - NO_TRANSLATION retained_intron ENSMUSG00000022185 Acin1 ENSMUST00000126166 ENSMUSP00000114546 TRANSLATION protein_coding - CCDS56957.1 1 565.0 0.0 1.0 1.4 92.1 0.0 -4,-5 0.4111 15 6.696 MINOR ENSMUSG00000022185 Acin1 ENSMUST00000141993 - NO_TRANSLATION retained_intron ENSMUSG00000022185 Acin1 ENSMUST00000125265 ENSMUSP00000120445 TRANSLATION protein_coding stop - 5 256.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 3 -2.0 MINOR ENSMUSG00000022185 Acin1 ENSMUST00000125767 - NO_TRANSLATION retained_intron ENSMUSG00000022185 Acin1 ENSMUST00000151487 - NO_TRANSLATION retained_intron ENSMUSG00000022185 Acin1 ENSMUST00000149713 - NO_TRANSLATION retained_intron ENSMUSG00000022185 Acin1 ENSMUST00000148754 ENSMUSP00000122003 TRANSLATION protein_coding - CCDS49492.1 5 581.0 0.0 1.0 5.1 92.1 0.0 -4,-5 1.0 15 8.5 PRINCIPAL:4 ENSMUSG00000021795 Sftpd ENSMUST00000225892 - NO_TRANSLATION retained_intron ENSMUSG00000021795 Sftpd ENSMUST00000077136 ENSMUSP00000076383 TRANSLATION protein_coding - CCDS26962.1 1 374.0 13.0 4.35 2.3 236.9 0.0 3,-2 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000021961 4930578I06Rik ENSMUST00000224600 ENSMUSP00000152904 TRANSLATION nonsense_mediated_decay - CCDS36950.1 - 298.0 0.0 3.1 2.7 33.4 0.0 -4,-7 1.0 2 -2.0 MINOR ENSMUSG00000021961 4930578I06Rik ENSMUST00000022532 ENSMUSP00000022532 TRANSLATION protein_coding - CCDS36950.1 1 298.0 0.0 3.1 2.7 33.4 0.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000021961 4930578I06Rik ENSMUST00000225544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025544 Tm9sf2 ENSMUST00000171318 ENSMUSP00000131227 TRANSLATION protein_coding - - 5 497.0 0.0 0.0 0.0 542.0 11.0 1,-3 0.0134 5 0.0 MINOR ENSMUSG00000025544 Tm9sf2 ENSMUST00000026624 ENSMUSP00000026624 TRANSLATION protein_coding - CCDS27345.1 1 662.0 0.0 0.0 7.1 707.6 11.0 1,-3 1.0 10 8.0 PRINCIPAL:1 ENSMUSG00000025544 Tm9sf2 ENSMUST00000170007 ENSMUSP00000128894 TRANSLATION nonsense_mediated_decay - - 3 57.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0021 - -2.0 MINOR ENSMUSG00000021824 Ap3m1 ENSMUST00000022371 ENSMUSP00000022371 TRANSLATION protein_coding - - 5 364.0 0.0 7.33 1.0 253.6 0.0 -4,-6 0.0125 9 8.148 MINOR ENSMUSG00000021824 Ap3m1 ENSMUST00000224016 ENSMUSP00000153649 TRANSLATION protein_coding - - - 204.0 0.0 4.33 0.0 183.9 0.0 -4,-5 0.0 7 0.0 MINOR ENSMUSG00000021824 Ap3m1 ENSMUST00000154460 ENSMUSP00000117346 TRANSLATION protein_coding - CCDS26861.1 1 418.0 0.0 8.33 36.9 284.5 0.0 -4,-6 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000021824 Ap3m1 ENSMUST00000126536 ENSMUSP00000116046 TRANSLATION nonsense_mediated_decay - - 3 114.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021824 Ap3m1 ENSMUST00000156716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021824 Ap3m1 ENSMUST00000130291 ENSMUSP00000118259 TRANSLATION protein_coding stop - 2 174.0 0.0 2.75 0.0 30.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021824 Ap3m1 ENSMUST00000148886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021824 Ap3m1 ENSMUST00000130370 ENSMUSP00000115157 TRANSLATION protein_coding stop - 2 148.0 0.0 2.0 0.0 30.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022174 Dad1 ENSMUST00000022781 ENSMUSP00000022781 TRANSLATION protein_coding - CCDS27084.1 1 113.0 0.0 2.0 20.0 161.0 3.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022174 Dad1 ENSMUST00000128231 ENSMUSP00000122366 TRANSLATION protein_coding - CCDS27084.1 1 113.0 0.0 2.0 20.0 161.0 3.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000021752 Kctd6 ENSMUST00000022272 ENSMUSP00000022272 TRANSLATION protein_coding - CCDS26812.1 1 237.0 0.0 1.132 31.8 73.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000021752 Kctd6 ENSMUST00000170111 ENSMUSP00000129059 TRANSLATION protein_coding - CCDS26812.1 1 237.0 0.0 1.132 31.8 73.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000022129 Dct ENSMUST00000227850 - NO_TRANSLATION retained_intron ENSMUSG00000022129 Dct ENSMUST00000228925 - NO_TRANSLATION retained_intron ENSMUSG00000022129 Dct ENSMUST00000022725 ENSMUSP00000022725 TRANSLATION protein_coding - CCDS27331.1 1 517.0 5.0 6.08 7.8 115.0 0.0 3,-2 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000022129 Dct ENSMUST00000228548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021748 Pdhb ENSMUST00000225747 - NO_TRANSLATION retained_intron ENSMUSG00000021748 Pdhb ENSMUST00000225274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021748 Pdhb ENSMUST00000224864 - NO_TRANSLATION retained_intron ENSMUSG00000021748 Pdhb ENSMUST00000022268 ENSMUSP00000022268 TRANSLATION protein_coding - CCDS36800.1 1 359.0 1.0 7.45 24.1 287.5 0.0 -4,0 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000021748 Pdhb ENSMUST00000225735 - NO_TRANSLATION retained_intron ENSMUSG00000021748 Pdhb ENSMUST00000224466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021748 Pdhb ENSMUST00000224690 - NO_TRANSLATION retained_intron ENSMUSG00000059456 Ptk2b ENSMUST00000178730 ENSMUSP00000137008 TRANSLATION protein_coding - CCDS49526.1 1 1009.0 18.0 19.13 10.3 538.5 0.0 -4,-7 0.984 35 17.0 PRINCIPAL:4 ENSMUSG00000059456 Ptk2b ENSMUST00000148104 - NO_TRANSLATION retained_intron ENSMUSG00000059456 Ptk2b ENSMUST00000136216 - NO_TRANSLATION retained_intron ENSMUSG00000059456 Ptk2b ENSMUST00000111121 ENSMUSP00000106750 TRANSLATION protein_coding - CCDS49525.1 1 1005.0 18.0 19.13 10.3 538.5 0.0 -4,-7 1.0 34 17.0 ALTERNATIVE:1 ENSMUSG00000059456 Ptk2b ENSMUST00000022622 ENSMUSP00000022622 TRANSLATION protein_coding - CCDS49526.1 5 1009.0 18.0 19.13 10.3 538.5 0.0 -4,-7 0.984 35 17.0 PRINCIPAL:4 ENSMUSG00000059456 Ptk2b ENSMUST00000127083 - NO_TRANSLATION retained_intron ENSMUSG00000059456 Ptk2b ENSMUST00000089250 ENSMUSP00000086661 TRANSLATION protein_coding - CCDS27220.1 1 967.0 18.0 19.13 9.2 538.5 0.0 -4,-7 0.9284 35 16.646 ALTERNATIVE:1 ENSMUSG00000059456 Ptk2b ENSMUST00000154865 ENSMUSP00000122683 TRANSLATION protein_coding start - 1 382.0 0.0 4.75 0.0 268.4 0.0 -4,-6 0.0 18 -2.0 MINOR ENSMUSG00000035469 Rcbtb1 ENSMUST00000172810 ENSMUSP00000134284 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035469 Rcbtb1 ENSMUST00000140136 ENSMUSP00000134515 TRANSLATION protein_coding stop - 3 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0298 - -2.0 MINOR ENSMUSG00000035469 Rcbtb1 ENSMUST00000043227 ENSMUSP00000037030 TRANSLATION protein_coding - CCDS27168.1 1 531.0 0.0 12.49 27.0 289.1 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000035469 Rcbtb1 ENSMUST00000153225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035469 Rcbtb1 ENSMUST00000022551 ENSMUSP00000022551 TRANSLATION protein_coding - CCDS27168.1 1 531.0 0.0 12.49 27.0 289.1 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000035469 Rcbtb1 ENSMUST00000174830 ENSMUSP00000133421 TRANSLATION protein_coding start - 5 94.0 0.0 2.83 0.0 81.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035469 Rcbtb1 ENSMUST00000173547 ENSMUSP00000134360 TRANSLATION protein_coding stop - 5 208.0 0.0 5.74 0.0 119.6 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000035469 Rcbtb1 ENSMUST00000142326 ENSMUSP00000134542 TRANSLATION protein_coding stop - 2 33.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000035469 Rcbtb1 ENSMUST00000174009 ENSMUSP00000133369 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035469 Rcbtb1 ENSMUST00000147280 - NO_TRANSLATION retained_intron ENSMUSG00000035469 Rcbtb1 ENSMUST00000095778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090874 Or4n4b ENSMUST00000214756 ENSMUSP00000150087 TRANSLATION protein_coding - CCDS27009.1 5 308.0 0.0 1.0 14.5 139.0 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000090874 Or4n4b ENSMUST00000163469 ENSMUSP00000128332 TRANSLATION protein_coding - CCDS27009.1 - 308.0 0.0 1.0 14.5 139.0 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000090874 Or4n4b ENSMUST00000214372 ENSMUSP00000149085 TRANSLATION protein_coding - CCDS27009.1 5 308.0 0.0 1.0 14.5 139.0 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000090874 Or4n4b ENSMUST00000216195 ENSMUSP00000149807 TRANSLATION protein_coding - CCDS27009.1 5 308.0 0.0 1.0 14.5 139.0 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047222 Rnase2a ENSMUST00000061936 ENSMUSP00000056418 TRANSLATION protein_coding - CCDS27041.1 1 155.0 5.0 1.0 0.4 120.4 0.0 2,-3 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000021747 Cfap20dc ENSMUST00000225744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021747 Cfap20dc ENSMUST00000102996 ENSMUSP00000100061 TRANSLATION protein_coding - CCDS26814.1 1 674.0 0.0 1.56 0.1 138.4 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000090713 Gm8127 ENSMUST00000163655 ENSMUSP00000127788 TRANSLATION protein_coding - - 5 211.0 0.0 3.0 0.0 90.2 0.0 -4,-2 0.7598 - 12.0 PRINCIPAL:1 ENSMUSG00000096168 Trav5n-4 ENSMUST00000179997 ENSMUSP00000137359 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.3 0.0 63.5 0.0 1,-3 0.8262 - -2.0 PRINCIPAL:1 ENSMUSG00000021871 Gm49342 ENSMUST00000227052 ENSMUSP00000154171 TRANSLATION protein_coding,RT stop - - 228.0 7.0 4.33 0.0 130.6 0.0 -4,-5 0.7406 - -2.0 PRINCIPAL:1 ENSMUSG00000033730 Egr3 ENSMUST00000223747 - NO_TRANSLATION retained_intron ENSMUSG00000033730 Egr3 ENSMUST00000225200 ENSMUSP00000153491 TRANSLATION protein_coding - CCDS27246.1 - 387.0 12.0 0.5 11.1 102.8 0.0 -4,-5 1.0 1 17.0 PRINCIPAL:2 ENSMUSG00000033730 Egr3 ENSMUST00000035908 ENSMUSP00000037042 TRANSLATION protein_coding - - 1 349.0 12.0 0.5 10.1 102.8 0.0 -4,-5 0.6849 1 16.703 ALTERNATIVE:1 ENSMUSG00000033730 Egr3 ENSMUST00000223809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093915 Trav12n-3 ENSMUST00000179583 ENSMUSP00000137319 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.1 0.0 44.5 0.0 4,-1 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000021803 Cdhr1 ENSMUST00000022337 ENSMUSP00000022337 TRANSLATION protein_coding - CCDS26952.1 1 859.0 36.0 8.74 6.7 224.5 0.0 4,-2 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000089901 Gm8113 ENSMUST00000160298 ENSMUSP00000125038 TRANSLATION protein_coding - - 1 587.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.6631 - 0.0 PRINCIPAL:1 ENSMUSG00000056296 Synpr ENSMUST00000225636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056296 Synpr ENSMUST00000223580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056296 Synpr ENSMUST00000145700 - NO_TRANSLATION retained_intron ENSMUSG00000056296 Synpr ENSMUST00000153954 ENSMUSP00000116342 TRANSLATION protein_coding stop - 3 125.0 0.0 1.25 0.0 0.0 0.0 1,-2 0.0026 2 -2.0 MINOR ENSMUSG00000056296 Synpr ENSMUST00000223583 ENSMUSP00000153361 TRANSLATION protein_coding - - - 325.0 0.0 3.5 0.0 129.2 4.0 -4,-6 0.0133 4 9.156 MINOR ENSMUSG00000056296 Synpr ENSMUST00000147677 - NO_TRANSLATION retained_intron ENSMUSG00000056296 Synpr ENSMUST00000112656 ENSMUSP00000108275 TRANSLATION protein_coding - CCDS49402.1 1 265.0 0.0 4.25 18.7 128.3 4.0 1,-2 0.8759 4 14.178 MINOR ENSMUSG00000056296 Synpr ENSMUST00000070323 ENSMUSP00000064986 TRANSLATION protein_coding - CCDS26821.1 1 285.0 0.0 4.4 20.8 146.6 5.0 -2,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000056296 Synpr ENSMUST00000226094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022051 Bnip3l ENSMUST00000135703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022051 Bnip3l ENSMUST00000138160 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022051 Bnip3l ENSMUST00000142593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022051 Bnip3l ENSMUST00000111115 ENSMUSP00000106744 TRANSLATION protein_coding - - 1 204.0 0.0 1.0 0.0 257.6 1.0 -4,-5 0.0453 3 8.448 MINOR ENSMUSG00000022051 Bnip3l ENSMUST00000151059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022051 Bnip3l ENSMUST00000022634 ENSMUSP00000022634 TRANSLATION protein_coding - CCDS27227.1 1 218.0 0.0 1.5 8.4 283.5 1.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000022051 Bnip3l ENSMUST00000129605 - NO_TRANSLATION retained_intron ENSMUSG00000062014 Gmfb ENSMUST00000145958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062014 Gmfb ENSMUST00000226937 ENSMUSP00000154491 TRANSLATION protein_coding start - - 137.0 0.0 3.34 0.0 103.8 0.0 -4,-7 0.0089 3 -2.0 MINOR ENSMUSG00000062014 Gmfb ENSMUST00000228515 - NO_TRANSLATION retained_intron ENSMUSG00000062014 Gmfb ENSMUST00000228065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062014 Gmfb ENSMUST00000226842 - NO_TRANSLATION retained_intron ENSMUSG00000062014 Gmfb ENSMUST00000226333 ENSMUSP00000153896 TRANSLATION protein_coding start - - 155.0 0.0 3.875 0.0 97.6 0.0 -4,-5 0.0019 4 -2.0 MINOR ENSMUSG00000062014 Gmfb ENSMUST00000111817 ENSMUSP00000107448 TRANSLATION protein_coding - CCDS36898.1 1 142.0 0.0 4.25 36.9 118.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000055639 Dach1 ENSMUST00000156684 - NO_TRANSLATION retained_intron ENSMUSG00000055639 Dach1 ENSMUST00000069334 ENSMUSP00000064970 TRANSLATION protein_coding - CCDS36993.1 1 699.0 0.0 0.6 0.4 132.0 0.0 -4,-7 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000055639 Dach1 ENSMUST00000071533 ENSMUSP00000071464 TRANSLATION protein_coding - CCDS36994.1 1 751.0 0.0 0.6 0.4 132.0 0.0 -4,-7 0.4273 3 8.0 ALTERNATIVE:2 ENSMUSG00000021945 Zmym2 ENSMUST00000225282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021945 Zmym2 ENSMUST00000226025 - NO_TRANSLATION retained_intron ENSMUSG00000021945 Zmym2 ENSMUST00000224922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021945 Zmym2 ENSMUST00000223965 - NO_TRANSLATION retained_intron ENSMUSG00000021945 Zmym2 ENSMUST00000223669 ENSMUSP00000152925 TRANSLATION protein_coding - - - 290.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 2 0.0 MINOR ENSMUSG00000021945 Zmym2 ENSMUST00000225393 - NO_TRANSLATION retained_intron ENSMUSG00000021945 Zmym2 ENSMUST00000022511 ENSMUSP00000022511 TRANSLATION protein_coding - CCDS49506.1 1 1376.0 15.0 0.6 9.5 465.7 0.0 -4,-5 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000034795 Ccdc122 ENSMUST00000095625 ENSMUSP00000093285 TRANSLATION protein_coding - CCDS79346.1 1 118.0 0.0 1.6 0.4 0.0 0.0 -4,-5 0.141 - 1.998 MINOR ENSMUSG00000034795 Ccdc122 ENSMUST00000175810 ENSMUSP00000135167 TRANSLATION nonsense_mediated_decay - - 1 64.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0062 - -2.0 MINOR ENSMUSG00000034795 Ccdc122 ENSMUST00000137110 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034795 Ccdc122 ENSMUST00000048208 ENSMUSP00000036369 TRANSLATION protein_coding - CCDS27288.1 1 290.0 0.0 3.6 0.4 0.0 0.0 -4,-5 0.9998 - 6.0 PRINCIPAL:1 ENSMUSG00000043681 Fam25a ENSMUST00000052126 ENSMUSP00000063140 TRANSLATION protein_coding - CCDS36875.1 1 89.0 0.0 0.0 12.5 121.6 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000076770 Trav8d-1 ENSMUST00000103580 ENSMUSP00000100357 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.3 0.0 62.0 0.0 4,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000021907 Msmb ENSMUST00000130397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021907 Msmb ENSMUST00000022464 ENSMUSP00000022464 TRANSLATION protein_coding - CCDS36862.1 1 113.0 0.0 2.2 0.4 158.9 0.0 3,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000021948 Prkcd ENSMUST00000227078 - NO_TRANSLATION retained_intron ENSMUSG00000021948 Prkcd ENSMUST00000112203 ENSMUSP00000107822 TRANSLATION protein_coding - - 1 545.0 28.0 7.76 0.0 324.8 0.0 -4,-5 0.0115 11 9.078 MINOR ENSMUSG00000021948 Prkcd ENSMUST00000112207 ENSMUSP00000107826 TRANSLATION protein_coding - - 1 559.0 29.0 8.76 1.5 362.4 0.0 -4,-5 0.1728 12 13.479 MINOR ENSMUSG00000021948 Prkcd ENSMUST00000130736 - NO_TRANSLATION retained_intron ENSMUSG00000021948 Prkcd ENSMUST00000112211 ENSMUSP00000107830 TRANSLATION protein_coding - CCDS79285.1 5 700.0 29.0 10.415 0.3 362.4 0.0 -4,-5 0.1471 16 16.65 MINOR ENSMUSG00000021948 Prkcd ENSMUST00000145806 - NO_TRANSLATION retained_intron ENSMUSG00000021948 Prkcd ENSMUST00000112208 - NO_TRANSLATION retained_intron ENSMUSG00000021948 Prkcd ENSMUST00000112206 ENSMUSP00000107825 TRANSLATION protein_coding - - 1 585.0 29.0 8.085 0.0 362.4 0.0 -4,-5 0.0333 12 12.0 MINOR ENSMUSG00000021948 Prkcd ENSMUST00000022521 ENSMUSP00000022521 TRANSLATION protein_coding - CCDS79285.1 1 700.0 29.0 10.415 0.3 362.4 0.0 -4,-5 0.1471 16 16.65 MINOR ENSMUSG00000021948 Prkcd ENSMUST00000140701 - NO_TRANSLATION retained_intron ENSMUSG00000021948 Prkcd ENSMUST00000135714 - NO_TRANSLATION retained_intron ENSMUSG00000021948 Prkcd ENSMUST00000112202 ENSMUSP00000107821 TRANSLATION protein_coding - - 1 571.0 28.0 7.085 0.0 324.8 0.0 -4,-5 0.0106 11 9.078 MINOR ENSMUSG00000021948 Prkcd ENSMUST00000112210 ENSMUSP00000107829 TRANSLATION protein_coding - CCDS26895.1 1 674.0 29.0 11.09 11.6 362.4 0.0 -4,-5 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000078127 Fam170b ENSMUST00000227787 - NO_TRANSLATION retained_intron ENSMUSG00000078127 Fam170b ENSMUST00000104926 ENSMUSP00000100529 TRANSLATION protein_coding - CCDS49439.1 2 378.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.8664 3 3.0 PRINCIPAL:1 ENSMUSG00000033589 Reep4 ENSMUST00000047218 ENSMUSP00000040162 TRANSLATION protein_coding - CCDS27256.1 1 257.0 0.0 4.016 12.0 96.8 1.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000033589 Reep4 ENSMUST00000227013 - NO_TRANSLATION retained_intron ENSMUSG00000033589 Reep4 ENSMUST00000228444 - NO_TRANSLATION retained_intron ENSMUSG00000033589 Reep4 ENSMUST00000226556 - NO_TRANSLATION retained_intron ENSMUSG00000033589 Reep4 ENSMUST00000226563 ENSMUSP00000154206 TRANSLATION protein_coding - - - 293.0 0.0 3.016 0.0 87.0 1.0 3,-2 0.011 2 9.396 MINOR ENSMUSG00000033589 Reep4 ENSMUST00000226592 - NO_TRANSLATION retained_intron ENSMUSG00000076911 Traj18 ENSMUST00000103723 ENSMUSP00000143421 TRANSLATION TR_J_gene start/stop - - 22.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.6648 - -2.0 PRINCIPAL:1 ENSMUSG00000076903 Traj26 ENSMUST00000103715 ENSMUSP00000143580 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000035078 Mtmr9 ENSMUST00000225449 ENSMUSP00000153682 TRANSLATION protein_coding start - - 139.0 0.0 2.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035078 Mtmr9 ENSMUST00000058679 ENSMUSP00000059894 TRANSLATION protein_coding - CCDS27203.1 1 545.0 0.0 11.0 25.9 451.2 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000076865 Trdv2-1 ENSMUST00000197130 ENSMUSP00000143506 TRANSLATION TR_V_gene stop - - 116.0 0.0 1.0 0.0 62.8 0.0 3,-2 0.8122 - -2.0 PRINCIPAL:5 ENSMUSG00000076865 Trdv2-1 ENSMUST00000103677 ENSMUSP00000100454 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.0 0.0 62.8 0.0 1,-3 0.2766 - -2.0 ALTERNATIVE:2 ENSMUSG00000076886 Traj44 ENSMUST00000103698 ENSMUSP00000142599 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021779 Thrb ENSMUST00000022304 ENSMUSP00000022304 TRANSLATION protein_coding - CCDS26835.1 1 475.0 27.0 6.0 19.5 166.7 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000021779 Thrb ENSMUST00000022303 ENSMUSP00000022303 TRANSLATION protein_coding - CCDS49404.1 5 461.0 27.0 6.0 12.5 166.7 0.0 -4,-5 0.9164 1 20.488 MINOR ENSMUSG00000021779 Thrb ENSMUST00000091471 ENSMUSP00000089053 TRANSLATION protein_coding - CCDS49404.1 1 461.0 27.0 6.0 12.5 166.7 0.0 -4,-5 0.9164 1 20.488 MINOR ENSMUSG00000021779 Thrb ENSMUST00000224470 ENSMUSP00000153230 TRANSLATION protein_coding stop - - 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021779 Thrb ENSMUST00000224597 ENSMUSP00000153055 TRANSLATION protein_coding stop - - 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021779 Thrb ENSMUST00000224934 ENSMUSP00000153355 TRANSLATION protein_coding stop - - 212.0 8.0 3.0 0.0 104.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000021779 Thrb ENSMUST00000224438 - NO_TRANSLATION retained_intron ENSMUSG00000046204 Pnma2 ENSMUST00000122431 ENSMUSP00000112629 TRANSLATION protein_coding - CCDS27226.1 1 365.0 0.0 1.0 6.9 389.0 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000046204 Pnma2 ENSMUST00000165831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046204 Pnma2 ENSMUST00000168010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046204 Pnma2 ENSMUST00000089236 ENSMUSP00000086646 TRANSLATION protein_coding - CCDS27226.1 1 365.0 0.0 1.0 6.9 389.0 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000041650 Pcca ENSMUST00000177312 ENSMUSP00000135665 TRANSLATION nonsense_mediated_decay start - 5 183.0 17.0 5.58 0.0 229.2 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000041650 Pcca ENSMUST00000154206 ENSMUSP00000120027 TRANSLATION protein_coding stop - 3 131.0 1.0 2.37 0.0 98.6 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000041650 Pcca ENSMUST00000156755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041650 Pcca ENSMUST00000132444 ENSMUSP00000135087 TRANSLATION protein_coding start - 5 86.0 0.0 1.2 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000041650 Pcca ENSMUST00000135578 ENSMUSP00000123422 TRANSLATION protein_coding stop - 3 163.0 4.0 3.45 0.0 88.5 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000041650 Pcca ENSMUST00000152383 ENSMUSP00000135266 TRANSLATION nonsense_mediated_decay start - 1 166.0 0.0 1.72375 0.0 0.0 0.0 -1,2 0.0 5 -2.0 MINOR ENSMUSG00000041650 Pcca ENSMUST00000147018 ENSMUSP00000135557 TRANSLATION nonsense_mediated_decay start - 1 35.0 0.0 0.32175 0.0 0.0 0.0 -1,1 0.0004 1 -2.0 MINOR ENSMUSG00000041650 Pcca ENSMUST00000143240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041650 Pcca ENSMUST00000038374 ENSMUSP00000038763 TRANSLATION protein_coding - CCDS27350.1 1 724.0 27.0 15.90175 10.7 625.6 0.0 -4,0 1.0 37 21.0 PRINCIPAL:1 ENSMUSG00000041650 Pcca ENSMUST00000140517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041650 Pcca ENSMUST00000138836 - NO_TRANSLATION retained_intron ENSMUSG00000041650 Pcca ENSMUST00000148172 - NO_TRANSLATION retained_intron ENSMUSG00000041650 Pcca ENSMUST00000128893 - NO_TRANSLATION retained_intron ENSMUSG00000094212 Trav14-3 ENSMUST00000103589 ENSMUSP00000100366 TRANSLATION TR_V_gene stop - - 120.0 0.0 1.2 0.0 68.3 0.0 3,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000022216 Psme1 ENSMUST00000173544 - NO_TRANSLATION retained_intron ENSMUSG00000022216 Psme1 ENSMUST00000173113 - NO_TRANSLATION retained_intron ENSMUSG00000022216 Psme1 ENSMUST00000174484 ENSMUSP00000133883 TRANSLATION protein_coding stop - 3 238.0 0.0 6.88 0.0 275.3 0.0 -4,-5 0.0204 15 -2.0 MINOR ENSMUSG00000022216 Psme1 ENSMUST00000172941 - NO_TRANSLATION retained_intron ENSMUSG00000022216 Psme1 ENSMUST00000173388 - NO_TRANSLATION retained_intron ENSMUSG00000022216 Psme1 ENSMUST00000228834 - NO_TRANSLATION retained_intron ENSMUSG00000022216 Psme1 ENSMUST00000174419 ENSMUSP00000133791 TRANSLATION nonsense_mediated_decay start - 3 42.0 0.0 1.49 0.0 33.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022216 Psme1 ENSMUST00000089619 ENSMUSP00000087046 TRANSLATION protein_coding - - 5 236.0 0.0 6.71 1.0 252.9 0.0 -4,-5 0.024 13 8.88 MINOR ENSMUSG00000022216 Psme1 ENSMUST00000172738 ENSMUSP00000133867 TRANSLATION protein_coding - - 5 226.0 0.0 6.46 0.0 203.3 0.0 -4,-5 0.0008 14 5.406 MINOR ENSMUSG00000022216 Psme1 ENSMUST00000174791 - NO_TRANSLATION retained_intron ENSMUSG00000022216 Psme1 ENSMUST00000174148 - NO_TRANSLATION retained_intron ENSMUSG00000022216 Psme1 ENSMUST00000174563 ENSMUSP00000133366 TRANSLATION protein_coding stop - 3 173.0 0.0 4.97 0.0 145.2 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000022216 Psme1 ENSMUST00000174259 ENSMUSP00000134735 TRANSLATION protein_coding - CCDS36931.1 1 249.0 0.0 7.21 21.5 288.2 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000072423 Psmb11 ENSMUST00000228446 ENSMUSP00000154313 TRANSLATION protein_coding stop - - 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0208 - -2.0 MINOR ENSMUSG00000072423 Psmb11 ENSMUST00000097177 ENSMUSP00000132140 TRANSLATION protein_coding - CCDS49491.1 - 302.0 0.0 1.0 3.8 136.0 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000002326 Gmpr2 ENSMUST00000227696 - NO_TRANSLATION retained_intron ENSMUSG00000002326 Gmpr2 ENSMUST00000227178 ENSMUSP00000154721 TRANSLATION protein_coding stop - - 96.0 6.0 2.5 0.0 36.7 0.0 -4,-6 0.0003 - -2.0 MINOR ENSMUSG00000002326 Gmpr2 ENSMUST00000226787 - NO_TRANSLATION retained_intron ENSMUSG00000002326 Gmpr2 ENSMUST00000226735 - NO_TRANSLATION retained_intron ENSMUSG00000002326 Gmpr2 ENSMUST00000227914 ENSMUSP00000154349 TRANSLATION protein_coding stop - - 218.0 19.0 5.25 0.0 151.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002326 Gmpr2 ENSMUST00000002397 ENSMUSP00000002397 TRANSLATION protein_coding - CCDS27124.1 1 348.0 37.0 7.75 34.9 276.4 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000033004 Mycbp2 ENSMUST00000239305 ENSMUSP00000159215 TRANSLATION nonsense_mediated_decay - - - 882.0 0.0 5.37 0.0 0.0 0.0 -4,-2 0.0035 12 -2.0 MINOR ENSMUSG00000033004 Mycbp2 ENSMUST00000162762 - NO_TRANSLATION retained_intron ENSMUSG00000033004 Mycbp2 ENSMUST00000162537 - NO_TRANSLATION retained_intron ENSMUSG00000033004 Mycbp2 ENSMUST00000159855 ENSMUSP00000124710 TRANSLATION protein_coding - CCDS49559.1 1 4746.0 7.0 19.02 5.3 407.6 0.0 -4,-2 1.0 74 20.0 PRINCIPAL:1 ENSMUSG00000033004 Mycbp2 ENSMUST00000162852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033004 Mycbp2 ENSMUST00000226961 ENSMUSP00000154774 TRANSLATION protein_coding start/stop - - 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0313 - -2.0 MINOR ENSMUSG00000033004 Mycbp2 ENSMUST00000161278 ENSMUSP00000125189 TRANSLATION protein_coding start/stop - 1 871.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0077 11 -2.0 MINOR ENSMUSG00000033004 Mycbp2 ENSMUST00000161008 ENSMUSP00000124443 TRANSLATION protein_coding start - 1 1463.0 7.0 5.6 0.0 56.3 0.0 -4,-5 0.0184 24 -2.0 MINOR ENSMUSG00000033004 Mycbp2 ENSMUST00000160758 ENSMUSP00000124601 TRANSLATION protein_coding start - 5 4636.0 7.0 19.02 0.0 407.6 0.0 -3,-6 0.2717 75 -2.0 MINOR ENSMUSG00000022102 Dok2 ENSMUST00000171481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022102 Dok2 ENSMUST00000165654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022102 Dok2 ENSMUST00000169599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022102 Dok2 ENSMUST00000022698 ENSMUSP00000022698 TRANSLATION protein_coding - CCDS27262.1 1 412.0 0.0 2.95 1.1 133.3 0.0 -4,-6 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000022102 Dok2 ENSMUST00000169106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022102 Dok2 ENSMUST00000171864 - NO_TRANSLATION retained_intron ENSMUSG00000022102 Dok2 ENSMUST00000164691 - NO_TRANSLATION retained_intron ENSMUSG00000022102 Dok2 ENSMUST00000168355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002320 Tm9sf1 ENSMUST00000138085 ENSMUSP00000119435 TRANSLATION protein_coding stop - 3 172.0 0.0 0.0 0.0 89.6 0.0 0,-3 0.0 4 -2.0 MINOR ENSMUSG00000002320 Tm9sf1 ENSMUST00000132338 ENSMUSP00000118427 TRANSLATION protein_coding stop - 5 484.0 0.0 0.0 0.0 396.2 7.0 0,-3 0.0038 10 -2.0 MINOR ENSMUSG00000002320 Tm9sf1 ENSMUST00000122358 ENSMUSP00000113782 TRANSLATION protein_coding - CCDS27122.1 1 606.0 0.0 0.0 11.0 527.9 10.0 0,-3 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000002320 Tm9sf1 ENSMUST00000146588 - NO_TRANSLATION retained_intron ENSMUSG00000002320 Tm9sf1 ENSMUST00000139313 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002320 Tm9sf1 ENSMUST00000149726 ENSMUSP00000115403 TRANSLATION nonsense_mediated_decay - - 5 417.0 0.0 0.0 0.0 282.0 5.0 0,-3 0.0038 9 -2.0 MINOR ENSMUSG00000002320 Tm9sf1 ENSMUST00000133707 ENSMUSP00000123471 TRANSLATION protein_coding stop - 5 118.0 0.0 0.0 0.0 47.8 0.0 0,-3 0.0 3 -2.0 MINOR ENSMUSG00000002320 Tm9sf1 ENSMUST00000127473 - NO_TRANSLATION retained_intron ENSMUSG00000002320 Tm9sf1 ENSMUST00000002391 ENSMUSP00000002391 TRANSLATION protein_coding - CCDS27122.1 1 606.0 0.0 0.0 11.0 527.9 10.0 0,-3 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000002320 Tm9sf1 ENSMUST00000120041 ENSMUSP00000112893 TRANSLATION protein_coding - CCDS27122.1 5 606.0 0.0 0.0 11.0 527.9 10.0 0,-3 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000002320 Tm9sf1 ENSMUST00000121791 ENSMUSP00000112764 TRANSLATION protein_coding - CCDS27122.1 5 606.0 0.0 0.0 11.0 527.9 10.0 0,-3 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000002320 Tm9sf1 ENSMUST00000121937 ENSMUSP00000113143 TRANSLATION protein_coding - - 5 589.0 0.0 0.0 0.1 469.7 9.0 0,-3 0.0448 10 2.508 MINOR ENSMUSG00000002320 Tm9sf1 ENSMUST00000130167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076919 Traj9 ENSMUST00000103731 ENSMUSP00000142928 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000071489 Ptgdr ENSMUST00000095959 ENSMUSP00000093653 TRANSLATION protein_coding - CCDS26971.1 1 357.0 0.0 1.4 0.4 63.8 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000021884 Hacl1 ENSMUST00000156431 ENSMUSP00000114922 TRANSLATION nonsense_mediated_decay - CCDS26915.1 1 581.0 43.0 14.99 8.4 352.9 0.0 -4,-5 1.0 17 -2.0 MINOR ENSMUSG00000021884 Hacl1 ENSMUST00000140078 ENSMUSP00000154592 TRANSLATION protein_coding start - 3 109.0 5.0 2.33 0.0 31.7 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000021884 Hacl1 ENSMUST00000139501 - NO_TRANSLATION retained_intron ENSMUSG00000021884 Hacl1 ENSMUST00000134626 ENSMUSP00000114879 TRANSLATION nonsense_mediated_decay - - 5 74.0 4.0 2.0 0.0 36.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021884 Hacl1 ENSMUST00000165955 ENSMUSP00000129090 TRANSLATION nonsense_mediated_decay - - 5 105.0 8.0 3.25 0.0 88.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021884 Hacl1 ENSMUST00000127204 ENSMUSP00000120452 TRANSLATION protein_coding - - 5 554.0 39.0 14.24 2.2 285.8 0.0 -4,-5 0.0913 17 10.296 MINOR ENSMUSG00000021884 Hacl1 ENSMUST00000171414 ENSMUSP00000130268 TRANSLATION nonsense_mediated_decay - - 5 122.0 8.0 3.65 0.0 88.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021884 Hacl1 ENSMUST00000167066 ENSMUSP00000132913 TRANSLATION protein_coding - - 5 521.0 43.0 13.16 1.0 307.6 0.0 -4,-5 0.0155 14 11.622 MINOR ENSMUSG00000021884 Hacl1 ENSMUST00000155210 - NO_TRANSLATION retained_intron ENSMUSG00000021884 Hacl1 ENSMUST00000128629 - NO_TRANSLATION retained_intron ENSMUSG00000021884 Hacl1 ENSMUST00000022437 ENSMUSP00000022437 TRANSLATION protein_coding - CCDS26915.1 1 581.0 43.0 14.99 8.4 352.9 0.0 -4,-5 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000021884 Hacl1 ENSMUST00000135751 - NO_TRANSLATION retained_intron ENSMUSG00000021884 Hacl1 ENSMUST00000156189 - NO_TRANSLATION retained_intron ENSMUSG00000076899 Traj30 ENSMUST00000103711 ENSMUSP00000142450 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000021775 Nr1d2 ENSMUST00000090543 ENSMUSP00000088031 TRANSLATION protein_coding - CCDS36811.1 1 576.0 8.0 5.25 8.4 193.2 0.0 -4,-6 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000021775 Nr1d2 ENSMUST00000143308 - NO_TRANSLATION retained_intron ENSMUSG00000021775 Nr1d2 ENSMUST00000225308 - NO_TRANSLATION retained_intron ENSMUSG00000021775 Nr1d2 ENSMUST00000225491 ENSMUSP00000153325 TRANSLATION protein_coding stop - - 175.0 0.0 3.0 0.0 76.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000112858 Rnf212b ENSMUST00000219496 ENSMUSP00000151823 TRANSLATION nonsense_mediated_decay start - 5 79.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000112858 Rnf212b ENSMUST00000220208 ENSMUSP00000151422 TRANSLATION nonsense_mediated_decay - - 5 212.0 8.0 4.264 0.0 30.5 0.0 -4,-5 0.0352 - -2.0 MINOR ENSMUSG00000112858 Rnf212b ENSMUST00000219350 ENSMUSP00000151412 TRANSLATION nonsense_mediated_decay - - 5 212.0 8.0 4.264 0.0 30.5 0.0 -4,-5 0.0352 - -2.0 MINOR ENSMUSG00000112858 Rnf212b ENSMUST00000220403 ENSMUSP00000151858 TRANSLATION nonsense_mediated_decay - - 5 57.0 8.0 1.5 0.0 30.5 0.0 -4,-5 0.0154 - -2.0 MINOR ENSMUSG00000112858 Rnf212b ENSMUST00000220122 ENSMUSP00000151770 TRANSLATION nonsense_mediated_decay - - 5 53.0 6.0 1.0 0.0 35.3 0.0 -4,-6 0.0105 - -2.0 MINOR ENSMUSG00000112858 Rnf212b ENSMUST00000219519 ENSMUSP00000151923 TRANSLATION nonsense_mediated_decay start - 5 161.0 0.0 2.764 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000112858 Rnf212b ENSMUST00000218311 ENSMUSP00000151344 TRANSLATION protein_coding - - 5 297.0 8.0 4.264 9.1 30.5 0.0 -4,-5 1.0 - 20.184 PRINCIPAL:1 ENSMUSG00000068758 Il3ra ENSMUST00000224415 - NO_TRANSLATION retained_intron ENSMUSG00000068758 Il3ra ENSMUST00000223589 ENSMUSP00000153460 TRANSLATION protein_coding - - - 196.0 0.0 1.032 0.0 44.6 0.0 1,-3 0.0042 1 5.178 MINOR ENSMUSG00000068758 Il3ra ENSMUST00000224163 ENSMUSP00000153358 TRANSLATION protein_coding - CCDS26827.1 - 396.0 0.0 2.264 0.0 103.9 2.0 1,-3 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000068758 Il3ra ENSMUST00000225560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068758 Il3ra ENSMUST00000224877 ENSMUSP00000153086 TRANSLATION protein_coding - - - 303.0 0.0 1.832 0.0 103.9 2.0 1,-2 0.0862 1 10.854 MINOR ENSMUSG00000068758 Il3ra ENSMUST00000090591 ENSMUSP00000088079 TRANSLATION protein_coding - CCDS26827.1 1 396.0 0.0 2.264 0.0 103.9 2.0 1,-3 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000068758 Il3ra ENSMUST00000225775 ENSMUSP00000153664 TRANSLATION protein_coding stop - - 187.0 0.0 1.232 0.0 62.7 0.0 1,-3 0.0027 1 -2.0 MINOR ENSMUSG00000041730 Drgx ENSMUST00000068938 ENSMUSP00000064107 TRANSLATION protein_coding - CCDS26922.1 1 220.0 0.0 2.1 0.0 87.3 0.0 -4,-5 0.0926 - 10.164 MINOR ENSMUSG00000041730 Drgx ENSMUST00000186452 ENSMUSP00000139756 TRANSLATION protein_coding - CCDS84110.1 5 263.0 0.0 2.1 22.0 117.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000041730 Drgx ENSMUST00000187377 ENSMUSP00000140687 TRANSLATION protein_coding - CCDS26922.1 1 220.0 0.0 2.1 0.0 87.3 0.0 -4,-5 0.0926 - 10.164 MINOR ENSMUSG00000041730 Drgx ENSMUST00000228878 ENSMUSP00000154801 TRANSLATION protein_coding - - - 180.0 0.0 2.1 0.0 87.3 0.0 -4,-5 0.0179 - 10.164 MINOR ENSMUSG00000041730 Drgx ENSMUST00000189022 ENSMUSP00000140337 TRANSLATION protein_coding - CCDS84110.1 1 263.0 0.0 2.1 22.0 117.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000060615 Ang4 ENSMUST00000073860 ENSMUSP00000073525 TRANSLATION protein_coding - CCDS36911.1 1 144.0 5.0 1.0 3.7 119.6 0.0 4,-1 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000022091 Sorbs3 ENSMUST00000227653 ENSMUSP00000154195 TRANSLATION protein_coding - - - 680.0 0.0 5.15 0.4 204.3 0.0 -4,-6 0.0547 16 8.0 ALTERNATIVE:2 ENSMUSG00000022091 Sorbs3 ENSMUST00000022682 ENSMUSP00000022682 TRANSLATION protein_coding - CCDS27249.1 1 733.0 0.0 5.15 0.4 204.3 0.0 -4,-6 1.0 16 8.0 PRINCIPAL:2 ENSMUSG00000022091 Sorbs3 ENSMUST00000227929 ENSMUSP00000154773 TRANSLATION protein_coding - - - 715.0 0.0 4.65 0.0 186.8 0.0 -4,-6 0.0362 16 6.398 MINOR ENSMUSG00000022091 Sorbs3 ENSMUST00000227259 ENSMUSP00000153715 TRANSLATION protein_coding - - - 680.0 0.0 5.15 0.4 204.3 0.0 -4,-6 0.0547 16 8.0 ALTERNATIVE:2 ENSMUSG00000048933 Or4n5 ENSMUST00000213271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048933 Or4n5 ENSMUST00000053290 ENSMUSP00000059721 TRANSLATION protein_coding - CCDS26998.1 1 308.0 0.0 1.0 14.5 149.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021737 Psmd6 ENSMUST00000127228 - NO_TRANSLATION retained_intron ENSMUSG00000021737 Psmd6 ENSMUST00000224955 ENSMUSP00000153591 TRANSLATION protein_coding start/stop - - 192.0 0.0 4.0 0.0 112.5 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000021737 Psmd6 ENSMUST00000153237 - NO_TRANSLATION retained_intron ENSMUSG00000021737 Psmd6 ENSMUST00000147471 - NO_TRANSLATION retained_intron ENSMUSG00000021737 Psmd6 ENSMUST00000022256 ENSMUSP00000022256 TRANSLATION protein_coding - CCDS26824.1 1 389.0 0.0 8.83 35.8 268.5 0.0 -4,-5 1.0 25 16.0 PRINCIPAL:1 ENSMUSG00000021737 Psmd6 ENSMUST00000224076 - NO_TRANSLATION retained_intron ENSMUSG00000042156 Dzip1 ENSMUST00000047208 ENSMUSP00000039689 TRANSLATION protein_coding - CCDS37011.1 5 852.0 3.0 0.0 0.4 142.5 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000042156 Dzip1 ENSMUST00000226960 - NO_TRANSLATION retained_intron ENSMUSG00000042156 Dzip1 ENSMUST00000228540 - NO_TRANSLATION retained_intron ENSMUSG00000042156 Dzip1 ENSMUST00000226919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042156 Dzip1 ENSMUST00000004055 ENSMUSP00000004055 TRANSLATION protein_coding - CCDS37011.1 1 852.0 3.0 0.0 0.4 142.5 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000042156 Dzip1 ENSMUST00000228157 - NO_TRANSLATION retained_intron ENSMUSG00000042156 Dzip1 ENSMUST00000228687 - NO_TRANSLATION retained_intron ENSMUSG00000042156 Dzip1 ENSMUST00000227344 - NO_TRANSLATION retained_intron ENSMUSG00000042156 Dzip1 ENSMUST00000228142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042156 Dzip1 ENSMUST00000228861 - NO_TRANSLATION retained_intron ENSMUSG00000076892 Traj38 ENSMUST00000103704 ENSMUSP00000143224 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000049532 Sall2 ENSMUST00000058326 ENSMUSP00000056401 TRANSLATION protein_coding - CCDS27054.1 1 1004.0 26.0 0.0 4.7 80.6 0.0 -4,-7 1.0 4 9.85 ALTERNATIVE:1 ENSMUSG00000049532 Sall2 ENSMUST00000135523 ENSMUSP00000154331 TRANSLATION protein_coding - - 1 1002.0 26.0 0.0 5.0 80.6 0.0 -4,-5 0.8626 5 10.0 PRINCIPAL:3 ENSMUSG00000068407 Rnase12 ENSMUST00000089798 ENSMUSP00000087231 TRANSLATION protein_coding - CCDS27032.1 - 145.0 11.0 1.0 5.0 87.7 0.0 3,-2 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000068407 Rnase12 ENSMUST00000227764 ENSMUSP00000154201 TRANSLATION protein_coding - CCDS27032.1 - 145.0 11.0 1.0 5.0 87.7 0.0 3,-2 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000094792 Trav10d ENSMUST00000103646 ENSMUSP00000100423 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.2 0.0 62.7 0.0 4,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000075572 Defb43 ENSMUST00000100491 ENSMUSP00000098060 TRANSLATION protein_coding - CCDS36946.1 1 69.0 0.0 1.0 4.3 33.5 0.0 4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000091898 Tnnc1 ENSMUST00000161399 - NO_TRANSLATION retained_intron ENSMUSG00000091898 Tnnc1 ENSMUST00000169169 ENSMUSP00000131991 TRANSLATION protein_coding - CCDS36854.1 1 161.0 20.0 4.32 35.7 112.7 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000091898 Tnnc1 ENSMUST00000170268 ENSMUSP00000128765 TRANSLATION nonsense_mediated_decay - - 5 106.0 8.0 2.66 0.0 56.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000096096 Trav4-4-dv10 ENSMUST00000103663 ENSMUSP00000100440 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.3 0.0 45.4 0.0 2,-2 0.8207 - -2.0 PRINCIPAL:1 ENSMUSG00000041673 Lrrc18 ENSMUST00000120951 ENSMUSP00000113965 TRANSLATION protein_coding - - 5 309.0 0.0 2.45 0.0 40.4 0.0 -4,-5 0.0192 3 12.0 MINOR ENSMUSG00000041673 Lrrc18 ENSMUST00000120866 ENSMUSP00000113608 TRANSLATION protein_coding - CCDS49440.1 1 255.0 0.0 2.2 8.4 40.4 0.0 -4,-5 1.0 3 14.388 PRINCIPAL:1 ENSMUSG00000041673 Lrrc18 ENSMUST00000123910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041673 Lrrc18 ENSMUST00000120588 ENSMUSP00000113825 TRANSLATION protein_coding stop - 3 57.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041673 Lrrc18 ENSMUST00000123822 ENSMUSP00000123178 TRANSLATION protein_coding stop - 5 111.0 0.0 1.8 0.0 40.4 0.0 -4,-5 0.0016 - -2.0 MINOR ENSMUSG00000041673 Lrrc18 ENSMUST00000038956 ENSMUSP00000041199 TRANSLATION protein_coding - CCDS26924.1 1 262.0 0.0 2.2 2.0 40.4 0.0 -4,-5 0.2864 3 11.793 MINOR ENSMUSG00000021750 Fam107a ENSMUST00000036070 ENSMUSP00000045513 TRANSLATION protein_coding - CCDS26813.1 1 144.0 0.0 2.33 18.2 134.2 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:4 ENSMUSG00000021750 Fam107a ENSMUST00000120411 ENSMUSP00000112769 TRANSLATION protein_coding - - 1 172.0 0.0 2.33 16.1 134.2 0.0 -4,-5 0.776 4 11.512 ALTERNATIVE:1 ENSMUSG00000021750 Fam107a ENSMUST00000137133 ENSMUSP00000120854 TRANSLATION protein_coding stop - 2 99.0 0.0 1.4 0.0 100.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021750 Fam107a ENSMUST00000121887 ENSMUSP00000114015 TRANSLATION protein_coding - CCDS26813.1 1 144.0 0.0 2.33 18.2 134.2 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:4 ENSMUSG00000048922 Cdca2 ENSMUST00000132705 ENSMUSP00000115633 TRANSLATION protein_coding stop - 5 549.0 0.0 0.8 0.0 83.2 0.0 -4,-5 0.082 9 -2.0 MINOR ENSMUSG00000048922 Cdca2 ENSMUST00000124045 ENSMUSP00000116384 TRANSLATION protein_coding stop - 3 310.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0028 6 -2.0 MINOR ENSMUSG00000048922 Cdca2 ENSMUST00000150006 ENSMUSP00000117847 TRANSLATION protein_coding - CCDS36962.2 1 982.0 0.0 0.8 0.0 83.2 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000048922 Cdca2 ENSMUST00000155312 - NO_TRANSLATION retained_intron ENSMUSG00000048922 Cdca2 ENSMUST00000163100 ENSMUSP00000127571 TRANSLATION protein_coding - CCDS36962.2 5 982.0 0.0 0.8 0.0 83.2 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000048922 Cdca2 ENSMUST00000131179 ENSMUSP00000123664 TRANSLATION protein_coding start/stop - 3 226.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000048922 Cdca2 ENSMUST00000130922 ENSMUSP00000119525 TRANSLATION nonsense_mediated_decay start - 5 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022020 Naa16 ENSMUST00000165337 - NO_TRANSLATION retained_intron ENSMUSG00000022020 Naa16 ENSMUST00000171928 - NO_TRANSLATION retained_intron ENSMUSG00000022020 Naa16 ENSMUST00000022597 ENSMUSP00000022597 TRANSLATION protein_coding - CCDS27296.1 1 864.0 0.0 14.73 23.9 746.6 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000022020 Naa16 ENSMUST00000227775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022020 Naa16 ENSMUST00000163486 ENSMUSP00000131268 TRANSLATION nonsense_mediated_decay - - 5 496.0 0.0 11.75 0.0 496.3 0.0 -4,-5 0.003 3 -2.0 MINOR ENSMUSG00000022020 Naa16 ENSMUST00000169500 ENSMUSP00000127298 TRANSLATION nonsense_mediated_decay - - 3 76.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022070 Bora ENSMUST00000227744 ENSMUSP00000154660 TRANSLATION nonsense_mediated_decay - - - 273.0 0.0 2.1 0.0 224.5 0.0 -4,-5 0.0394 1 -2.0 MINOR ENSMUSG00000022070 Bora ENSMUST00000022656 ENSMUSP00000022656 TRANSLATION protein_coding - CCDS27309.1 1 525.0 0.0 2.1 0.0 224.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022070 Bora ENSMUST00000226823 - NO_TRANSLATION retained_intron ENSMUSG00000022070 Bora ENSMUST00000227128 ENSMUSP00000154817 TRANSLATION nonsense_mediated_decay - - - 115.0 0.0 1.0 0.0 94.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022070 Bora ENSMUST00000228082 - NO_TRANSLATION retained_intron ENSMUSG00000058997 Vwa8 ENSMUST00000040990 ENSMUSP00000048925 TRANSLATION protein_coding - CCDS49550.1 5 1905.0 15.0 2.255 7.4 342.2 0.0 -2,2 1.0 64 20.0 PRINCIPAL:1 ENSMUSG00000058997 Vwa8 ENSMUST00000228904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058997 Vwa8 ENSMUST00000227676 - NO_TRANSLATION retained_intron ENSMUSG00000058997 Vwa8 ENSMUST00000227255 ENSMUSP00000154270 TRANSLATION protein_coding - - - 1038.0 15.0 2.255 1.0 342.2 0.0 -2,2 0.3777 40 18.0 MINOR ENSMUSG00000058997 Vwa8 ENSMUST00000228884 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034913 Cby2 ENSMUST00000169658 ENSMUSP00000129616 TRANSLATION protein_coding - CCDS49542.1 3 419.0 0.0 0.132 2.0 45.3 0.0 -4,-5 0.6455 4 6.556 ALTERNATIVE:2 ENSMUSG00000034913 Cby2 ENSMUST00000165569 ENSMUSP00000131347 TRANSLATION protein_coding - CCDS49541.1 1 368.0 0.0 0.132 0.1 45.4 0.0 -4,-2 0.3812 4 6.0 ALTERNATIVE:2 ENSMUSG00000034913 Cby2 ENSMUST00000226623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034913 Cby2 ENSMUST00000035243 ENSMUSP00000046259 TRANSLATION protein_coding - CCDS27279.1 1 410.0 0.0 0.132 1.8 45.3 0.0 -4,-6 0.6125 4 6.444 ALTERNATIVE:2 ENSMUSG00000034913 Cby2 ENSMUST00000164082 ENSMUSP00000127439 TRANSLATION protein_coding - CCDS49543.1 2 446.0 0.0 0.132 2.8 45.3 0.0 -4,-5 1.0 4 7.0 PRINCIPAL:2 ENSMUSG00000021848 Otx2 ENSMUST00000118578 ENSMUSP00000113690 TRANSLATION protein_coding - CCDS49473.1 1 289.0 0.0 1.83 35.8 189.2 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000021848 Otx2 ENSMUST00000122009 ENSMUSP00000113930 TRANSLATION protein_coding - CCDS49473.1 1 289.0 0.0 1.83 35.8 189.2 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000021848 Otx2 ENSMUST00000133479 ENSMUSP00000122200 TRANSLATION protein_coding stop - 3 63.0 0.0 1.0 0.0 27.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021848 Otx2 ENSMUST00000226501 ENSMUSP00000154264 TRANSLATION protein_coding - CCDS49473.1 - 289.0 0.0 1.83 35.8 189.2 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000021848 Otx2 ENSMUST00000119739 ENSMUSP00000113586 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021848 Otx2 ENSMUST00000227404 ENSMUSP00000154066 TRANSLATION protein_coding - CCDS49473.1 - 289.0 0.0 1.83 35.8 189.2 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000021848 Otx2 ENSMUST00000135279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021848 Otx2 ENSMUST00000152018 ENSMUSP00000123454 TRANSLATION protein_coding stop - 2 207.0 0.0 1.83 0.0 153.5 0.0 -4,-6 0.0134 - -2.0 MINOR ENSMUSG00000021848 Otx2 ENSMUST00000228512 - NO_TRANSLATION retained_intron ENSMUSG00000021848 Otx2 ENSMUST00000144465 ENSMUSP00000116630 TRANSLATION protein_coding stop - 3 98.0 0.0 1.83 0.0 72.0 0.0 -4,-6 0.0258 - -2.0 MINOR ENSMUSG00000021848 Otx2 ENSMUST00000119070 ENSMUSP00000112532 TRANSLATION protein_coding - CCDS70575.1 1 297.0 0.0 1.83 33.8 189.2 0.0 -4,-5 0.9677 - 11.772 ALTERNATIVE:1 ENSMUSG00000095030 Or10g3b ENSMUST00000215147 ENSMUSP00000149216 TRANSLATION protein_coding - CCDS27055.1 5 313.0 0.0 0.8 15.6 165.6 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095030 Or10g3b ENSMUST00000089739 ENSMUSP00000087171 TRANSLATION protein_coding - CCDS27055.1 - 313.0 0.0 0.8 15.6 165.6 7.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000114942 Gm49361 ENSMUST00000174694 ENSMUSP00000133680 TRANSLATION nonsense_mediated_decay,RT - - 2 853.0 18.0 1.158 0.0 135.9 0.0 -4,-2 0.8833 - -2.0 PRINCIPAL:1 ENSMUSG00000022101 Fgf17 ENSMUST00000022697 ENSMUSP00000022697 TRANSLATION protein_coding - CCDS27260.1 1 216.0 9.0 3.265 10.5 137.7 0.0 3,-1 1.0 - 17.0 PRINCIPAL:4 ENSMUSG00000022101 Fgf17 ENSMUST00000227123 ENSMUSP00000154684 TRANSLATION protein_coding - - - 205.0 9.0 3.1 10.4 137.7 0.0 4,-1 0.7505 - 16.637 ALTERNATIVE:1 ENSMUSG00000076894 Traj35 ENSMUST00000103706 ENSMUSP00000143307 TRANSLATION TR_J_gene start/stop - - 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000076907 Traj22 ENSMUST00000103719 ENSMUSP00000142342 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000025558 Dock9 ENSMUST00000212181 ENSMUSP00000148834 TRANSLATION protein_coding - CCDS84161.1 1 2088.0 12.0 13.834 7.7 1049.7 0.0 -4,-5 1.0 48 20.0 PRINCIPAL:1 ENSMUSG00000025558 Dock9 ENSMUST00000239077 ENSMUSP00000159030 TRANSLATION protein_coding - - - 2055.0 12.0 13.584 3.1 1027.7 0.0 -4,-6 0.389 46 16.808 MINOR ENSMUSG00000025558 Dock9 ENSMUST00000211907 - NO_TRANSLATION retained_intron ENSMUSG00000025558 Dock9 ENSMUST00000238406 ENSMUSP00000158723 TRANSLATION protein_coding start/stop - - 133.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000025558 Dock9 ENSMUST00000212719 - NO_TRANSLATION retained_intron ENSMUSG00000025558 Dock9 ENSMUST00000212371 - NO_TRANSLATION retained_intron ENSMUSG00000025558 Dock9 ENSMUST00000212416 ENSMUSP00000148303 TRANSLATION nonsense_mediated_decay start - 5 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000025558 Dock9 ENSMUST00000211803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025558 Dock9 ENSMUST00000211993 - NO_TRANSLATION retained_intron ENSMUSG00000025558 Dock9 ENSMUST00000212376 ENSMUSP00000148328 TRANSLATION protein_coding - CCDS84162.1 5 2042.0 12.0 13.834 0.0 1042.5 0.0 -4,-6 0.4146 45 17.568 MINOR ENSMUSG00000025558 Dock9 ENSMUST00000040700 ENSMUSP00000047881 TRANSLATION protein_coding - CCDS37018.1 2 2113.0 12.0 13.084 6.6 1042.7 0.0 -4,-5 0.8017 47 17.752 MINOR ENSMUSG00000025558 Dock9 ENSMUST00000100299 ENSMUSP00000097872 TRANSLATION protein_coding - CCDS49569.1 1 2058.0 12.0 13.834 3.5 1049.7 0.0 -4,-2 0.8104 44 18.746 MINOR ENSMUSG00000106289 Trav23 ENSMUST00000199137 ENSMUSP00000143388 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.4 0.0 0.0 0.0 -1,-6 0.6821 - -2.0 PRINCIPAL:1 ENSMUSG00000021815 Mss51 ENSMUST00000022353 ENSMUSP00000022353 TRANSLATION protein_coding - CCDS49414.1 1 446.0 8.0 1.016 0.0 37.1 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000097148 Gapdhrt ENSMUST00000181173 ENSMUSP00000138396 TRANSLATION protein_coding - - 5 333.0 22.0 1.0 36.9 364.6 0.0 -4,-1 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000091873 Or4n4 ENSMUST00000071208 ENSMUSP00000071195 TRANSLATION protein_coding - CCDS27008.1 - 308.0 0.0 1.0 14.5 151.9 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091873 Or4n4 ENSMUST00000213701 ENSMUSP00000148984 TRANSLATION protein_coding - CCDS27008.1 5 308.0 0.0 1.0 14.5 151.9 5.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000104915 Trav15n-2 ENSMUST00000199112 ENSMUSP00000143056 TRANSLATION TR_V_gene stop - - 117.0 0.0 1.0 0.0 61.8 0.0 3,-2 0.8234 - -2.0 PRINCIPAL:1 ENSMUSG00000096488 Gm10409 ENSMUST00000170123 ENSMUSP00000126947 TRANSLATION protein_coding - - 1 150.0 0.0 3.0 0.0 68.4 0.0 -4,-5 0.7361 - 12.0 PRINCIPAL:1 ENSMUSG00000022221 Ripk3 ENSMUST00000022830 ENSMUSP00000022830 TRANSLATION protein_coding - CCDS27131.1 1 486.0 20.0 5.22 0.0 188.0 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000022221 Ripk3 ENSMUST00000228077 - NO_TRANSLATION retained_intron ENSMUSG00000022221 Ripk3 ENSMUST00000168716 ENSMUSP00000126306 TRANSLATION protein_coding - CCDS49499.1 5 422.0 10.0 3.89 0.0 153.3 0.0 -4,-6 0.0033 10 7.26 MINOR ENSMUSG00000022221 Ripk3 ENSMUST00000228326 ENSMUSP00000154235 TRANSLATION protein_coding stop - - 158.0 10.0 1.97 0.0 88.8 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000022221 Ripk3 ENSMUST00000227072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022221 Ripk3 ENSMUST00000228175 - NO_TRANSLATION retained_intron ENSMUSG00000022221 Ripk3 ENSMUST00000228476 ENSMUSP00000153911 TRANSLATION protein_coding start/stop - - 160.0 0.0 0.0 0.0 27.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000022221 Ripk3 ENSMUST00000178399 ENSMUSP00000137278 TRANSLATION protein_coding - CCDS49499.1 1 422.0 10.0 3.89 0.0 153.3 0.0 -4,-6 0.0033 10 7.26 MINOR ENSMUSG00000022221 Ripk3 ENSMUST00000226203 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022066 Entpd4b ENSMUST00000064846 ENSMUSP00000063726 TRANSLATION protein_coding - - 1 102.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000022066 Entpd4b ENSMUST00000185174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022066 Entpd4b ENSMUST00000184506 - NO_TRANSLATION retained_intron ENSMUSG00000022066 Entpd4b ENSMUST00000185072 ENSMUSP00000139202 TRANSLATION protein_coding - - 1 613.0 0.0 8.5 21.4 358.5 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000022066 Entpd4b ENSMUST00000183906 - NO_TRANSLATION retained_intron ENSMUSG00000022000 Zc3h13 ENSMUST00000228470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022000 Zc3h13 ENSMUST00000022577 ENSMUSP00000022577 TRANSLATION protein_coding - CCDS27278.1 5 1729.0 4.0 1.0 0.0 30.9 0.0 -4,-2 1.0 13 12.0 PRINCIPAL:2 ENSMUSG00000022000 Zc3h13 ENSMUST00000226417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022000 Zc3h13 ENSMUST00000227049 ENSMUSP00000153882 TRANSLATION protein_coding - - - 1730.0 4.0 1.0 0.0 30.9 0.0 -4,-2 0.7074 13 12.0 ALTERNATIVE:2 ENSMUSG00000040721 Zfhx2 ENSMUST00000176665 - NO_TRANSLATION retained_intron ENSMUSG00000040721 Zfhx2 ENSMUST00000188534 - NO_TRANSLATION retained_intron ENSMUSG00000040721 Zfhx2 ENSMUST00000185430 - NO_TRANSLATION retained_intron ENSMUSG00000040721 Zfhx2 ENSMUST00000036328 ENSMUSP00000045156 TRANSLATION protein_coding - CCDS27107.1 1 2562.0 33.0 0.0 0.0 218.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022057 Adamdec1 ENSMUST00000022641 ENSMUSP00000022641 TRANSLATION protein_coding - CCDS49532.1 1 467.0 10.0 6.0 2.1 281.4 0.0 2,-2 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000021902 Phf7 ENSMUST00000228140 - NO_TRANSLATION retained_intron ENSMUSG00000021902 Phf7 ENSMUST00000226310 ENSMUSP00000154614 TRANSLATION nonsense_mediated_decay - - - 226.0 4.0 1.2 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021902 Phf7 ENSMUST00000227668 - NO_TRANSLATION retained_intron ENSMUSG00000021902 Phf7 ENSMUST00000226565 ENSMUSP00000154095 TRANSLATION protein_coding - - - 268.0 23.0 3.664 0.0 64.4 0.0 -4,-6 0.034 - 14.67 MINOR ENSMUSG00000021902 Phf7 ENSMUST00000228930 ENSMUSP00000154281 TRANSLATION nonsense_mediated_decay - - - 164.0 9.0 1.8 0.0 58.5 0.0 -4,-6 0.0017 - -2.0 MINOR ENSMUSG00000021902 Phf7 ENSMUST00000022459 ENSMUSP00000022459 TRANSLATION protein_coding - CCDS26909.1 1 307.0 25.0 4.664 0.0 64.4 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000021902 Phf7 ENSMUST00000228437 ENSMUSP00000154738 TRANSLATION protein_coding - - - 212.0 14.0 3.764 0.0 0.0 0.0 -4,-6 0.0 - 4.2 MINOR ENSMUSG00000050505 Pcdh20 ENSMUST00000061628 ENSMUSP00000054774 TRANSLATION protein_coding - CCDS27306.1 1 952.0 44.0 0.6 6.9 244.9 2.0 -4,0 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000050505 Pcdh20 ENSMUST00000192557 ENSMUSP00000141860 TRANSLATION protein_coding - CCDS27306.1 1 952.0 44.0 0.6 6.9 244.9 2.0 -4,0 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000096129 Trav12d-2 ENSMUST00000197007 ENSMUSP00000142977 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 45.3 0.0 3,-1 0.8224 - -2.0 PRINCIPAL:1 ENSMUSG00000057606 Colq ENSMUST00000146302 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057606 Colq ENSMUST00000112027 ENSMUSP00000107658 TRANSLATION protein_coding - CCDS36856.2 1 457.0 8.0 4.762 7.3 63.8 0.0 -2,-4 1.0 1 16.0 PRINCIPAL:2 ENSMUSG00000057606 Colq ENSMUST00000150054 ENSMUSP00000121065 TRANSLATION protein_coding - - 5 447.0 8.0 4.762 4.0 65.2 0.0 -1,-4 0.6641 1 14.952 ALTERNATIVE:2 ENSMUSG00000057606 Colq ENSMUST00000129238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057606 Colq ENSMUST00000124014 ENSMUSP00000116916 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000091733 Gm8094 ENSMUST00000165136 ENSMUSP00000126820 TRANSLATION protein_coding - - 5 211.0 0.0 3.0 0.0 90.2 0.0 -4,-2 0.7598 - 12.0 PRINCIPAL:1 ENSMUSG00000021939 Ctsb ENSMUST00000225639 - NO_TRANSLATION retained_intron ENSMUSG00000021939 Ctsb ENSMUST00000006235 ENSMUSP00000006235 TRANSLATION protein_coding - CCDS27197.1 1 339.0 4.0 8.3 18.9 287.2 0.0 4,-1 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000021939 Ctsb ENSMUST00000225540 - NO_TRANSLATION retained_intron ENSMUSG00000096531 Trav12n-2 ENSMUST00000196674 ENSMUSP00000143168 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 45.3 0.0 3,-1 0.8224 - -2.0 PRINCIPAL:1 ENSMUSG00000068392 Rnase13 ENSMUST00000089771 ENSMUSP00000087203 TRANSLATION protein_coding - CCDS27048.1 - 153.0 0.0 1.0 5.4 96.0 0.0 4,-1 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000021957 Tkt ENSMUST00000223717 ENSMUSP00000153691 TRANSLATION protein_coding start - - 502.0 12.0 12.08 0.0 251.9 0.0 -4,-7 0.003 26 -2.0 MINOR ENSMUSG00000021957 Tkt ENSMUST00000225039 - NO_TRANSLATION retained_intron ENSMUSG00000021957 Tkt ENSMUST00000160189 - NO_TRANSLATION retained_intron ENSMUSG00000021957 Tkt ENSMUST00000160406 - NO_TRANSLATION retained_intron ENSMUSG00000021957 Tkt ENSMUST00000022529 ENSMUSP00000022529 TRANSLATION protein_coding - CCDS26894.1 1 623.0 18.0 15.58 9.9 283.7 0.0 -4,-5 1.0 37 21.0 PRINCIPAL:1 ENSMUSG00000021957 Tkt ENSMUST00000223633 - NO_TRANSLATION retained_intron ENSMUSG00000021957 Tkt ENSMUST00000162356 ENSMUSP00000124485 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 0.8325 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021957 Tkt ENSMUST00000225857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021957 Tkt ENSMUST00000160274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021771 Vdac2 ENSMUST00000173456 ENSMUSP00000134023 TRANSLATION protein_coding - - 5 283.0 0.0 7.08 36.9 281.7 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000021771 Vdac2 ENSMUST00000224373 ENSMUSP00000152916 TRANSLATION protein_coding stop - - 246.0 0.0 5.58 0.0 233.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000021771 Vdac2 ENSMUST00000130224 - NO_TRANSLATION retained_intron ENSMUSG00000021771 Vdac2 ENSMUST00000022293 ENSMUSP00000022293 TRANSLATION protein_coding - CCDS26867.1 1 295.0 0.0 7.08 6.4 281.7 0.0 -4,-5 0.5624 13 12.6 MINOR ENSMUSG00000021771 Vdac2 ENSMUST00000153320 ENSMUSP00000115560 TRANSLATION protein_coding stop - 5 201.0 0.0 4.25 0.0 190.5 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000021771 Vdac2 ENSMUST00000172727 ENSMUSP00000133525 TRANSLATION protein_coding - - 5 283.0 0.0 7.08 36.9 281.7 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000021771 Vdac2 ENSMUST00000147715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021771 Vdac2 ENSMUST00000132364 - NO_TRANSLATION retained_intron ENSMUSG00000021771 Vdac2 ENSMUST00000142084 - NO_TRANSLATION retained_intron ENSMUSG00000021771 Vdac2 ENSMUST00000152562 ENSMUSP00000123032 TRANSLATION protein_coding stop - 3 75.0 0.0 2.0 0.0 65.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000036339 Tmem260 ENSMUST00000226344 - NO_TRANSLATION retained_intron ENSMUSG00000036339 Tmem260 ENSMUST00000133744 - NO_TRANSLATION retained_intron ENSMUSG00000036339 Tmem260 ENSMUST00000153765 ENSMUSP00000116155 TRANSLATION nonsense_mediated_decay - - 1 111.0 0.0 2.33 0.0 0.0 4.0 -2,0 0.0249 - -2.0 MINOR ENSMUSG00000036339 Tmem260 ENSMUST00000226400 ENSMUSP00000154803 TRANSLATION protein_coding - - - 142.0 0.0 1.0 0.0 0.0 1.0 -2,0 0.0191 - 0.0 MINOR ENSMUSG00000036339 Tmem260 ENSMUST00000111735 ENSMUSP00000107364 TRANSLATION protein_coding - CCDS26993.2 1 703.0 0.0 15.08 6.6 0.0 20.0 -2,0 1.0 6 8.0 PRINCIPAL:2 ENSMUSG00000036339 Tmem260 ENSMUST00000227440 ENSMUSP00000154360 TRANSLATION protein_coding - - - 629.0 0.0 14.08 0.0 0.0 20.0 -2,0 0.0655 5 4.002 MINOR ENSMUSG00000036339 Tmem260 ENSMUST00000226373 - NO_TRANSLATION retained_intron ENSMUSG00000036339 Tmem260 ENSMUST00000228697 ENSMUSP00000153822 TRANSLATION protein_coding start/stop - - 243.0 0.0 5.25 0.0 0.0 14.0 -2,-5 0.0262 2 -2.0 MINOR ENSMUSG00000036339 Tmem260 ENSMUST00000226422 ENSMUSP00000154083 TRANSLATION protein_coding - - - 712.0 2.0 15.08 0.0 0.0 20.0 -2,0 0.1728 6 8.0 ALTERNATIVE:2 ENSMUSG00000036339 Tmem260 ENSMUST00000124720 ENSMUSP00000118376 TRANSLATION protein_coding - CCDS79318.1 1 551.0 0.0 11.75 2.9 0.0 11.0 -4,-7 0.4329 6 0.678 MINOR ENSMUSG00000036339 Tmem260 ENSMUST00000227942 - NO_TRANSLATION retained_intron ENSMUSG00000036339 Tmem260 ENSMUST00000156480 - NO_TRANSLATION retained_intron ENSMUSG00000022010 Tsc22d1 ENSMUST00000133224 ENSMUSP00000135561 TRANSLATION protein_coding - CCDS79345.1 2 86.0 0.0 1.0 18.6 102.4 0.0 -4,-5 0.8511 1 13.806 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000177333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022010 Tsc22d1 ENSMUST00000048371 ENSMUSP00000044517 TRANSLATION protein_coding - CCDS27285.2 1 1077.0 0.0 1.5 0.0 102.4 0.0 -4,-5 0.4356 7 12.0 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000134109 ENSMUSP00000135146 TRANSLATION protein_coding - - 2 82.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 0.0 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000175655 - NO_TRANSLATION retained_intron ENSMUSG00000022010 Tsc22d1 ENSMUST00000142683 ENSMUSP00000135493 TRANSLATION protein_coding - CCDS79345.1 3 86.0 0.0 1.0 18.6 102.4 0.0 -4,-5 0.8511 1 13.806 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000176886 ENSMUSP00000135202 TRANSLATION nonsense_mediated_decay start - 5 128.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.001 - -2.0 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000101618 ENSMUSP00000099140 TRANSLATION protein_coding - CCDS49545.1 1 107.0 0.0 1.5 0.3 102.4 0.0 -4,-5 0.2106 1 12.0 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000176581 ENSMUSP00000135789 TRANSLATION protein_coding start/stop - 5 132.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000110888 ENSMUSP00000106513 TRANSLATION protein_coding - CCDS79344.1 1 995.0 0.0 1.5 0.0 102.4 0.0 -4,-5 0.4193 7 12.0 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000177207 ENSMUSP00000135296 TRANSLATION protein_coding - CCDS79345.1 3 86.0 0.0 1.0 18.6 102.4 0.0 -4,-5 0.8511 1 13.806 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000175811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022010 Tsc22d1 ENSMUST00000177471 ENSMUSP00000134792 TRANSLATION nonsense_mediated_decay start - 5 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000022587 ENSMUSP00000022587 TRANSLATION protein_coding - CCDS27286.1 1 143.0 0.0 1.5 19.5 102.4 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022010 Tsc22d1 ENSMUST00000175984 ENSMUSP00000135307 TRANSLATION nonsense_mediated_decay start - 3 133.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000022010 Tsc22d1 ENSMUST00000140251 ENSMUSP00000135806 TRANSLATION protein_coding - CCDS79345.1 2 86.0 0.0 1.0 18.6 102.4 0.0 -4,-5 0.8511 1 13.806 MINOR ENSMUSG00000090764 Gm3127 ENSMUST00000171866 ENSMUSP00000128550 TRANSLATION protein_coding - - 5 263.0 0.0 4.0 0.0 67.8 0.0 -4,-5 0.7338 - 12.0 PRINCIPAL:1 ENSMUSG00000090764 Gm3127 ENSMUST00000167839 ENSMUSP00000126805 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 67.8 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000021774 Ube2e1 ENSMUST00000160266 - NO_TRANSLATION retained_intron ENSMUSG00000021774 Ube2e1 ENSMUST00000162831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021774 Ube2e1 ENSMUST00000225612 ENSMUSP00000153693 TRANSLATION protein_coding stop - - 148.0 0.0 3.75 0.0 157.9 0.0 -4,-6 0.0257 - -2.0 MINOR ENSMUSG00000021774 Ube2e1 ENSMUST00000161580 - NO_TRANSLATION retained_intron ENSMUSG00000021774 Ube2e1 ENSMUST00000022296 ENSMUSP00000022296 TRANSLATION protein_coding - CCDS26837.1 1 193.0 0.0 3.58 25.0 158.7 0.0 -4,-5 1.0 - 15.658 PRINCIPAL:1 ENSMUSG00000094619 Trav14d-3-dv8 ENSMUST00000103608 ENSMUSP00000100385 TRANSLATION TR_V_gene stop - - 120.0 0.0 1.1 0.0 62.8 0.0 3,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000022041 Chrna2 ENSMUST00000206455 ENSMUSP00000145896 TRANSLATION protein_coding - CCDS27219.1 5 512.0 0.0 3.7 2.1 585.2 4.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022041 Chrna2 ENSMUST00000022620 ENSMUSP00000022620 TRANSLATION protein_coding - CCDS27219.1 1 512.0 0.0 3.7 2.1 585.2 4.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022217 Emc9 ENSMUST00000022828 ENSMUSP00000022828 TRANSLATION protein_coding - CCDS27117.1 1 206.0 0.0 5.0 23.9 191.5 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000022217 Emc9 ENSMUST00000174618 - NO_TRANSLATION retained_intron ENSMUSG00000022217 Emc9 ENSMUST00000173169 - NO_TRANSLATION retained_intron ENSMUSG00000022217 Emc9 ENSMUST00000174352 ENSMUSP00000133463 TRANSLATION protein_coding start - 3 97.0 0.0 2.25 0.0 68.2 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000100241 Slc18a3 ENSMUST00000191501 ENSMUSP00000139829 TRANSLATION protein_coding - CCDS79291.1 - 530.0 0.0 0.16 5.9 107.2 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000033405 Nudt15 ENSMUST00000226903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033405 Nudt15 ENSMUST00000043813 ENSMUSP00000039537 TRANSLATION protein_coding - CCDS27270.1 1 170.0 4.0 3.0 4.0 67.1 0.0 -4,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000046210 Or4q3 ENSMUST00000049729 ENSMUSP00000056851 TRANSLATION protein_coding - CCDS27011.1 - 354.0 0.0 1.0 0.0 167.7 5.0 -4,-7 0.5588 - 8.0 ALTERNATIVE:2 ENSMUSG00000046210 Or4q3 ENSMUST00000216634 ENSMUSP00000153148 TRANSLATION protein_coding - - 3 323.0 0.0 1.0 0.0 167.7 5.0 -4,-7 0.8184 - 8.0 PRINCIPAL:2 ENSMUSG00000090827 Gm8297 ENSMUST00000171636 ENSMUSP00000131394 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 73.1 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000090827 Gm8297 ENSMUST00000171964 ENSMUSP00000127256 TRANSLATION protein_coding - - 5 267.0 0.0 4.0 0.0 73.1 0.0 -4,-5 0.7383 - 12.0 PRINCIPAL:1 ENSMUSG00000094954 Gm8011 ENSMUST00000172163 ENSMUSP00000128769 TRANSLATION protein_coding start - 5 207.0 0.0 3.0 0.0 84.3 0.0 -4,-2 0.7581 - -2.0 PRINCIPAL:1 ENSMUSG00000076864 Trdv1 ENSMUST00000103676 ENSMUSP00000100453 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 51.6 0.0 4,-1 0.8257 - -2.0 PRINCIPAL:1 ENSMUSG00000090634 Gm8126 ENSMUST00000169587 ENSMUSP00000132242 TRANSLATION protein_coding - - 2 198.0 0.0 3.0 0.0 80.9 0.0 -4,-2 0.7585 - 12.0 PRINCIPAL:1 ENSMUSG00000052417 Or2t6 ENSMUST00000035250 ENSMUSP00000046509 TRANSLATION protein_coding - CCDS26825.1 - 316.0 0.0 1.0 7.4 164.9 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000052417 Or2t6 ENSMUST00000217642 ENSMUSP00000149641 TRANSLATION protein_coding - CCDS26825.1 5 316.0 0.0 1.0 7.4 164.9 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000052417 Or2t6 ENSMUST00000216079 ENSMUSP00000149975 TRANSLATION protein_coding - CCDS26825.1 5 316.0 0.0 1.0 7.4 164.9 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000052417 Or2t6 ENSMUST00000206298 ENSMUSP00000146132 TRANSLATION protein_coding - CCDS26825.1 3 316.0 0.0 1.0 7.4 164.9 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000021918 Nek4 ENSMUST00000227199 - NO_TRANSLATION retained_intron ENSMUSG00000021918 Nek4 ENSMUST00000226833 ENSMUSP00000154606 TRANSLATION protein_coding - - - 274.0 20.0 4.7 0.0 225.0 0.0 -4,-6 0.0729 5 12.0 ALTERNATIVE:2 ENSMUSG00000021918 Nek4 ENSMUST00000227602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021918 Nek4 ENSMUST00000050171 ENSMUSP00000057915 TRANSLATION protein_coding - - 1 737.0 11.0 4.4 0.0 193.3 0.0 -1,-5 0.0296 13 5.4 MINOR ENSMUSG00000021918 Nek4 ENSMUST00000228328 ENSMUSP00000154090 TRANSLATION protein_coding - CCDS26902.1 - 792.0 20.0 4.7 1.1 225.0 0.0 -4,-6 1.0 14 13.0 PRINCIPAL:2 ENSMUSG00000021918 Nek4 ENSMUST00000226551 ENSMUSP00000154678 TRANSLATION protein_coding - - - 744.0 20.0 4.7 0.0 225.0 0.0 -4,-6 0.102 14 12.0 ALTERNATIVE:2 ENSMUSG00000021918 Nek4 ENSMUST00000228392 - NO_TRANSLATION retained_intron ENSMUSG00000021918 Nek4 ENSMUST00000226146 ENSMUSP00000153710 TRANSLATION protein_coding start - - 630.0 3.0 2.6 0.0 95.0 0.0 -4,-6 0.001 12 -2.0 MINOR ENSMUSG00000007589 Tinf2 ENSMUST00000226314 ENSMUSP00000154611 TRANSLATION protein_coding stop - - 197.0 0.0 2.771 0.0 91.3 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000007589 Tinf2 ENSMUST00000227996 - NO_TRANSLATION retained_intron ENSMUSG00000007589 Tinf2 ENSMUST00000227873 ENSMUSP00000153900 TRANSLATION protein_coding stop - - 149.0 0.0 2.771 0.0 65.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007589 Tinf2 ENSMUST00000228683 - NO_TRANSLATION retained_intron ENSMUSG00000007589 Tinf2 ENSMUST00000226641 - NO_TRANSLATION retained_intron ENSMUSG00000007589 Tinf2 ENSMUST00000226819 ENSMUSP00000154730 TRANSLATION protein_coding start - - 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007589 Tinf2 ENSMUST00000227842 ENSMUSP00000154628 TRANSLATION protein_coding - - - 419.0 0.0 3.771 0.0 131.6 0.0 -4,-1 0.2013 3 8.0 ALTERNATIVE:2 ENSMUSG00000007589 Tinf2 ENSMUST00000007733 ENSMUSP00000007733 TRANSLATION protein_coding - CCDS27125.1 1 414.0 0.0 3.771 0.0 131.6 0.0 -4,-1 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000007589 Tinf2 ENSMUST00000228264 - NO_TRANSLATION retained_intron ENSMUSG00000025290 Rps24 ENSMUST00000169826 ENSMUSP00000125977 TRANSLATION protein_coding - CCDS36830.1 1 130.0 0.0 2.66 28.6 154.6 0.0 -4,-7 0.973 6 11.956 ALTERNATIVE:1 ENSMUSG00000025290 Rps24 ENSMUST00000224549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025290 Rps24 ENSMUST00000224569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025290 Rps24 ENSMUST00000223939 - NO_TRANSLATION retained_intron ENSMUSG00000025290 Rps24 ENSMUST00000225023 ENSMUSP00000152944 TRANSLATION protein_coding - CCDS36829.1 - 133.0 0.0 2.66 28.9 154.6 0.0 -4,-7 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000025290 Rps24 ENSMUST00000224699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025290 Rps24 ENSMUST00000112384 ENSMUSP00000108003 TRANSLATION protein_coding - CCDS36830.1 5 130.0 0.0 2.66 28.6 154.6 0.0 -4,-7 0.973 6 11.956 ALTERNATIVE:1 ENSMUSG00000025290 Rps24 ENSMUST00000223999 ENSMUSP00000153659 TRANSLATION protein_coding - - - 131.0 0.0 2.66 28.6 154.6 0.0 -4,-7 0.8313 6 11.956 ALTERNATIVE:1 ENSMUSG00000025290 Rps24 ENSMUST00000225994 - NO_TRANSLATION retained_intron ENSMUSG00000025290 Rps24 ENSMUST00000225117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025290 Rps24 ENSMUST00000224568 ENSMUSP00000153637 TRANSLATION protein_coding - - - 118.0 0.0 2.33 5.1 154.6 0.0 -4,-7 0.1941 5 7.844 MINOR ENSMUSG00000025290 Rps24 ENSMUST00000223931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076889 Traj41 ENSMUST00000103701 ENSMUSP00000142973 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021786 Oxsm ENSMUST00000112625 ENSMUSP00000108244 TRANSLATION protein_coding - CCDS26831.1 1 459.0 0.0 2.0 10.1 328.7 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000021786 Oxsm ENSMUST00000022311 ENSMUSP00000022311 TRANSLATION protein_coding - CCDS26831.1 1 459.0 0.0 2.0 10.1 328.7 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000021786 Oxsm ENSMUST00000112624 ENSMUSP00000108243 TRANSLATION protein_coding - CCDS26831.1 1 459.0 0.0 2.0 10.1 328.7 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000021786 Oxsm ENSMUST00000148121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091809 Or2t35 ENSMUST00000215479 ENSMUSP00000150661 TRANSLATION protein_coding - - 5 322.0 0.0 1.0 8.5 154.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091809 Or2t35 ENSMUST00000206688 ENSMUSP00000146190 TRANSLATION protein_coding - - - 322.0 0.0 1.0 8.5 154.8 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095646 Trav10n ENSMUST00000103612 ENSMUSP00000100389 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.2 0.0 65.1 0.0 4,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000039197 Adk ENSMUST00000223861 - NO_TRANSLATION retained_intron ENSMUSG00000039197 Adk ENSMUST00000224899 ENSMUSP00000153057 TRANSLATION protein_coding stop - - 123.0 9.0 3.0 0.0 56.4 0.0 -4,-6 0.0 10 -2.0 MINOR ENSMUSG00000039197 Adk ENSMUST00000223645 ENSMUSP00000153265 TRANSLATION protein_coding start - - 41.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039197 Adk ENSMUST00000223915 ENSMUSP00000152928 TRANSLATION protein_coding start/stop - - 205.0 14.0 5.43 0.0 94.3 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000039197 Adk ENSMUST00000045376 ENSMUSP00000047665 TRANSLATION protein_coding - CCDS26862.1 1 361.0 29.0 9.85 24.8 265.2 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:4 ENSMUSG00000039197 Adk ENSMUST00000225742 - NO_TRANSLATION retained_intron ENSMUSG00000039197 Adk ENSMUST00000224069 ENSMUSP00000153089 TRANSLATION protein_coding - - - 345.0 29.0 9.75 24.8 265.2 0.0 -4,-5 0.8417 18 17.802 ALTERNATIVE:1 ENSMUSG00000039197 Adk ENSMUST00000223558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039197 Adk ENSMUST00000224974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039197 Adk ENSMUST00000223641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048349 Pou4f1 ENSMUST00000053016 ENSMUSP00000060798 TRANSLATION protein_coding - CCDS27319.1 1 421.0 0.0 0.2 5.7 166.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048349 Pou4f1 ENSMUST00000139505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039599 Fam149b ENSMUST00000224721 ENSMUSP00000153509 TRANSLATION protein_coding - CCDS49408.1 - 338.0 0.0 0.0 0.0 90.8 0.0 -4,-7 0.14 4 6.0 MINOR ENSMUSG00000039599 Fam149b ENSMUST00000225837 - NO_TRANSLATION retained_intron ENSMUSG00000039599 Fam149b ENSMUST00000051915 ENSMUSP00000056907 TRANSLATION protein_coding - - 5 449.0 0.0 0.0 0.1 90.8 0.0 -4,-7 0.0868 5 6.0 MINOR ENSMUSG00000039599 Fam149b ENSMUST00000225597 ENSMUSP00000153360 TRANSLATION nonsense_mediated_decay - - - 144.0 0.0 0.0 0.0 39.8 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000039599 Fam149b ENSMUST00000225991 ENSMUSP00000153332 TRANSLATION protein_coding stop - - 203.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000039599 Fam149b ENSMUST00000225834 ENSMUSP00000153160 TRANSLATION nonsense_mediated_decay - - - 76.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000039599 Fam149b ENSMUST00000224242 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039599 Fam149b ENSMUST00000225942 ENSMUSP00000153645 TRANSLATION protein_coding - - - 606.0 0.0 0.0 0.0 90.8 0.0 -4,-7 0.0708 5 6.0 MINOR ENSMUSG00000039599 Fam149b ENSMUST00000224079 - NO_TRANSLATION retained_intron ENSMUSG00000039599 Fam149b ENSMUST00000090503 ENSMUSP00000087989 TRANSLATION protein_coding - CCDS49410.1 1 485.0 0.0 0.0 0.0 39.8 0.0 -4,-7 0.0274 3 2.628 MINOR ENSMUSG00000039599 Fam149b ENSMUST00000223898 - NO_TRANSLATION retained_intron ENSMUSG00000039599 Fam149b ENSMUST00000090499 ENSMUSP00000087985 TRANSLATION protein_coding - CCDS49409.1 1 578.0 0.0 0.0 6.7 90.8 0.0 -4,-7 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000039599 Fam149b ENSMUST00000037698 ENSMUSP00000045247 TRANSLATION protein_coding - - 1 245.0 0.0 0.0 0.0 39.8 0.0 -4,-7 0.0001 2 2.628 MINOR ENSMUSG00000039599 Fam149b ENSMUST00000225114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039599 Fam149b ENSMUST00000224930 ENSMUSP00000153235 TRANSLATION protein_coding - - - 305.0 0.0 0.0 0.0 90.8 0.0 -4,-7 0.0387 4 6.0 MINOR ENSMUSG00000039599 Fam149b ENSMUST00000224110 ENSMUSP00000153544 TRANSLATION protein_coding stop - - 102.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000039599 Fam149b ENSMUST00000224670 - NO_TRANSLATION retained_intron ENSMUSG00000021981 Cab39l ENSMUST00000225595 ENSMUSP00000153643 TRANSLATION protein_coding - - - 296.0 0.0 7.033 0.0 373.4 0.0 -4,-5 0.0004 8 4.74 MINOR ENSMUSG00000021981 Cab39l ENSMUST00000223678 ENSMUSP00000153281 TRANSLATION protein_coding stop - - 79.0 0.0 2.0 0.0 60.5 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000021981 Cab39l ENSMUST00000225149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021981 Cab39l ENSMUST00000224893 ENSMUSP00000153449 TRANSLATION protein_coding stop - - 32.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000021981 Cab39l ENSMUST00000224281 - NO_TRANSLATION retained_intron ENSMUSG00000021981 Cab39l ENSMUST00000022553 ENSMUSP00000022553 TRANSLATION protein_coding - CCDS27171.1 1 337.0 0.0 8.0 34.2 462.2 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000076848 Trav15-2-dv6-2 ENSMUST00000103660 ENSMUSP00000100437 TRANSLATION TR_V_gene stop - - 123.0 0.0 1.0 0.0 53.8 0.0 0,-3 0.791 - -2.0 PRINCIPAL:1 ENSMUSG00000094966 Trav9-2 ENSMUST00000103654 ENSMUSP00000100431 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.1 0.0 57.5 0.0 3,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000091568 Gm8206 ENSMUST00000249567 ENSMUSP00000159796 TRANSLATION protein_coding - - - 133.0 0.0 2.75 0.0 54.9 0.0 -4,-5 0.0092 - 5.862 ALTERNATIVE:2 ENSMUSG00000091568 Gm8206 ENSMUST00000164139 ENSMUSP00000128269 TRANSLATION protein_coding - - 5 133.0 0.0 2.75 0.0 54.9 0.0 -4,-5 0.0092 - 5.862 ALTERNATIVE:2 ENSMUSG00000091568 Gm8206 ENSMUST00000249565 ENSMUSP00000159794 TRANSLATION protein_coding - - - 133.0 0.0 2.75 0.0 54.9 0.0 -4,-5 0.0092 - 5.862 ALTERNATIVE:2 ENSMUSG00000091568 Gm8206 ENSMUST00000249566 ENSMUSP00000159795 TRANSLATION protein_coding - - - 133.0 0.0 2.75 0.0 54.9 0.0 -4,-5 0.0092 - 5.862 ALTERNATIVE:2 ENSMUSG00000091568 Gm8206 ENSMUST00000249568 ENSMUSP00000159797 TRANSLATION protein_coding - - - 133.0 0.0 2.75 0.0 54.9 0.0 -4,-5 0.0092 - 5.862 ALTERNATIVE:2 ENSMUSG00000091568 Gm8206 ENSMUST00000171428 ENSMUSP00000127533 TRANSLATION protein_coding - - 5 148.0 0.0 2.816 0.0 54.9 0.0 -4,-5 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000040701 Ap1g2 ENSMUST00000151314 ENSMUSP00000122796 TRANSLATION nonsense_mediated_decay - - 1 235.0 0.0 4.0 0.0 185.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040701 Ap1g2 ENSMUST00000127870 ENSMUSP00000116698 TRANSLATION nonsense_mediated_decay - - 1 235.0 0.0 4.0 0.0 185.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040701 Ap1g2 ENSMUST00000137548 - NO_TRANSLATION retained_intron ENSMUSG00000040701 Ap1g2 ENSMUST00000036041 ENSMUSP00000043996 TRANSLATION protein_coding - CCDS36929.1 1 791.0 5.0 17.75 5.2 599.8 0.0 -4,-5 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000040701 Ap1g2 ENSMUST00000153702 - NO_TRANSLATION retained_intron ENSMUSG00000040701 Ap1g2 ENSMUST00000137481 - NO_TRANSLATION retained_intron ENSMUSG00000040701 Ap1g2 ENSMUST00000139536 - NO_TRANSLATION retained_intron ENSMUSG00000040701 Ap1g2 ENSMUST00000133004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040701 Ap1g2 ENSMUST00000131323 ENSMUSP00000115441 TRANSLATION nonsense_mediated_decay - - 2 235.0 0.0 4.0 0.0 185.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040701 Ap1g2 ENSMUST00000144197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021866 Anxa11 ENSMUST00000124704 - NO_TRANSLATION retained_intron ENSMUSG00000021866 Anxa11 ENSMUST00000133547 - NO_TRANSLATION retained_intron ENSMUSG00000021866 Anxa11 ENSMUST00000112364 ENSMUSP00000107983 TRANSLATION protein_coding - - 1 447.0 14.0 6.57 0.0 201.5 0.0 -4,-5 0.001 14 3.978 MINOR ENSMUSG00000021866 Anxa11 ENSMUST00000022416 ENSMUSP00000022416 TRANSLATION protein_coding - CCDS26875.1 1 503.0 18.0 9.25 0.1 342.8 0.0 -4,-5 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000095958 Trav12-3 ENSMUST00000103657 ENSMUSP00000100434 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.1 0.0 40.0 0.0 4,-1 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000121513 Ptprg ENSMUST00000248537 ENSMUSP00000159543 TRANSLATION protein_coding - - - 1442.0 11.0 20.24 7.9 789.9 1.0 -1,-4 1.0 21 20.0 PRINCIPAL:1 ENSMUSG00000121513 Ptprg ENSMUST00000248716 ENSMUSP00000159546 TRANSLATION protein_coding start/stop - - 130.0 0.0 0.75 0.0 0.0 1.0 -4,-7 0.0009 - -2.0 MINOR ENSMUSG00000121513 Ptprg ENSMUST00000248714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000121513 Ptprg ENSMUST00000248712 ENSMUSP00000159545 TRANSLATION nonsense_mediated_decay - - - 260.0 0.0 5.132 0.0 170.3 0.0 -1,-4 0.0 5 -2.0 MINOR ENSMUSG00000121513 Ptprg ENSMUST00000248715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000121513 Ptprg ENSMUST00000248718 - NO_TRANSLATION retained_intron ENSMUSG00000121513 Ptprg ENSMUST00000248713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000121513 Ptprg ENSMUST00000248717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079371 Gm3476 ENSMUST00000167913 ENSMUSP00000126875 TRANSLATION protein_coding - - 5 257.0 0.0 4.0 0.0 69.8 0.0 -4,-5 0.7288 - 12.0 PRINCIPAL:1 ENSMUSG00000079371 Gm3476 ENSMUST00000112742 ENSMUSP00000108362 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 69.8 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000076858 Trav3-4 ENSMUST00000103670 ENSMUSP00000100447 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.25 0.0 55.6 0.0 1,-2 0.8245 - -2.0 PRINCIPAL:1 ENSMUSG00000055128 Cgrrf1 ENSMUST00000068532 ENSMUSP00000070548 TRANSLATION protein_coding - CCDS26981.1 1 332.0 8.0 0.8 8.2 43.6 2.0 -2,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000055128 Cgrrf1 ENSMUST00000140114 ENSMUSP00000154423 TRANSLATION protein_coding - - 1 112.0 0.0 0.0 0.0 0.0 2.0 -2,-5 0.0021 1 0.0 MINOR ENSMUSG00000055128 Cgrrf1 ENSMUST00000133989 ENSMUSP00000154697 TRANSLATION protein_coding - - 1 212.0 0.0 0.0 0.0 0.0 2.0 -2,-5 0.0028 4 0.0 MINOR ENSMUSG00000055128 Cgrrf1 ENSMUST00000133790 - NO_TRANSLATION retained_intron ENSMUSG00000055128 Cgrrf1 ENSMUST00000226861 ENSMUSP00000153818 TRANSLATION nonsense_mediated_decay - - - 99.0 0.0 0.0 0.0 0.0 2.0 -2,-5 0.0021 1 -2.0 MINOR ENSMUSG00000022016 Akap11 ENSMUST00000227722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022016 Akap11 ENSMUST00000227808 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022016 Akap11 ENSMUST00000123853 ENSMUSP00000116015 TRANSLATION protein_coding - CCDS49549.1 5 1894.0 0.0 0.0 0.0 0.0 0.0 -4,0 1.0 20 0.0 PRINCIPAL:1 ENSMUSG00000022016 Akap11 ENSMUST00000226416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022106 Rcbtb2 ENSMUST00000169479 ENSMUSP00000126898 TRANSLATION protein_coding - CCDS27266.1 1 551.0 0.0 14.466 7.0 268.5 0.0 -4,-5 1.0 5 10.337 PRINCIPAL:3 ENSMUSG00000022106 Rcbtb2 ENSMUST00000110952 ENSMUSP00000106577 TRANSLATION protein_coding - CCDS27266.1 1 551.0 0.0 14.466 7.0 268.5 0.0 -4,-5 1.0 5 10.337 PRINCIPAL:3 ENSMUSG00000022106 Rcbtb2 ENSMUST00000170278 - NO_TRANSLATION retained_intron ENSMUSG00000022106 Rcbtb2 ENSMUST00000165429 ENSMUSP00000127258 TRANSLATION protein_coding stop - 5 157.0 0.0 4.896 0.0 54.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000165727 ENSMUSP00000128479 TRANSLATION protein_coding stop - 3 90.0 0.0 2.66 0.0 77.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000171163 - NO_TRANSLATION retained_intron ENSMUSG00000022106 Rcbtb2 ENSMUST00000171767 ENSMUSP00000127397 TRANSLATION protein_coding - - 1 517.0 0.0 13.216 0.0 268.5 0.0 -4,-5 0.0688 5 5.498 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000167021 ENSMUSP00000131496 TRANSLATION protein_coding stop - 5 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000165646 - NO_TRANSLATION retained_intron ENSMUSG00000022106 Rcbtb2 ENSMUST00000170677 ENSMUSP00000126510 TRANSLATION protein_coding - - 1 527.0 0.0 14.466 8.7 268.5 0.0 -4,-5 0.9419 4 11.0 ALTERNATIVE:1 ENSMUSG00000022106 Rcbtb2 ENSMUST00000163546 - NO_TRANSLATION retained_intron ENSMUSG00000022106 Rcbtb2 ENSMUST00000170368 ENSMUSP00000126276 TRANSLATION protein_coding stop - 5 86.0 0.0 1.566 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000167401 ENSMUSP00000128221 TRANSLATION protein_coding - - 5 72.0 0.0 1.132 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000163650 - NO_TRANSLATION retained_intron ENSMUSG00000022106 Rcbtb2 ENSMUST00000170370 ENSMUSP00000130732 TRANSLATION protein_coding stop - 3 128.0 0.0 2.896 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000163339 ENSMUSP00000131374 TRANSLATION protein_coding stop - 3 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0228 - -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000171070 ENSMUSP00000132723 TRANSLATION protein_coding stop - 5 69.0 0.0 1.066 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000163533 ENSMUSP00000130828 TRANSLATION protein_coding stop - 3 149.0 0.0 3.816 0.0 30.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000169513 ENSMUSP00000128579 TRANSLATION protein_coding - - 1 527.0 0.0 14.466 8.7 268.5 0.0 -4,-5 0.9419 4 11.0 ALTERNATIVE:1 ENSMUSG00000022106 Rcbtb2 ENSMUST00000022702 ENSMUSP00000022702 TRANSLATION protein_coding - CCDS27266.1 5 551.0 0.0 14.466 7.0 268.5 0.0 -4,-5 1.0 5 10.337 PRINCIPAL:3 ENSMUSG00000022106 Rcbtb2 ENSMUST00000165334 - NO_TRANSLATION retained_intron ENSMUSG00000022106 Rcbtb2 ENSMUST00000164822 ENSMUSP00000131588 TRANSLATION protein_coding - CCDS27266.1 1 551.0 0.0 14.466 7.0 268.5 0.0 -4,-5 1.0 5 10.337 PRINCIPAL:3 ENSMUSG00000022106 Rcbtb2 ENSMUST00000165567 ENSMUSP00000130240 TRANSLATION protein_coding stop - 5 172.0 0.0 4.566 0.0 54.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000166875 ENSMUSP00000130168 TRANSLATION protein_coding start/stop - 1 119.0 0.0 2.33 0.0 48.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000164298 ENSMUSP00000126651 TRANSLATION nonsense_mediated_decay start - 5 292.0 0.0 7.306 0.0 141.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022106 Rcbtb2 ENSMUST00000163797 ENSMUSP00000132125 TRANSLATION nonsense_mediated_decay start - 5 219.0 0.0 4.646 0.0 36.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000047911 Npm2 ENSMUST00000228473 ENSMUSP00000154427 TRANSLATION non_stop_decay stop - - 168.0 0.0 3.05 0.0 118.0 0.0 -4,-5 0.012 - -2.0 MINOR ENSMUSG00000047911 Npm2 ENSMUST00000062629 ENSMUSP00000057365 TRANSLATION protein_coding - CCDS27261.1 1 207.0 0.0 3.05 0.4 118.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000092109 Gm9376 ENSMUST00000171107 ENSMUSP00000128952 TRANSLATION protein_coding - CCDS49564.1 - 176.0 0.0 0.8 0.0 34.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040432 Ltb4r2 ENSMUST00000044554 ENSMUSP00000048358 TRANSLATION protein_coding - CCDS27128.1 1 360.0 0.0 0.4 8.2 104.1 0.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040432 Ltb4r2 ENSMUST00000228302 - NO_TRANSLATION retained_intron ENSMUSG00000035726 Supt16 ENSMUST00000046709 ENSMUSP00000042283 TRANSLATION protein_coding - CCDS27051.1 1 1047.0 4.0 17.8 12.7 555.1 0.0 -4,-6 1.0 34 19.0 PRINCIPAL:1 ENSMUSG00000035726 Supt16 ENSMUST00000227577 - NO_TRANSLATION retained_intron ENSMUSG00000036242 Armh4 ENSMUST00000036972 ENSMUSP00000036220 TRANSLATION protein_coding - CCDS36903.1 1 775.0 0.0 0.0 0.1 733.5 1.0 -1,-4 1.0 1 2.0 PRINCIPAL:4 ENSMUSG00000036242 Armh4 ENSMUST00000118129 ENSMUSP00000113609 TRANSLATION protein_coding - - 1 774.0 0.0 0.0 0.1 733.5 1.0 -1,-4 0.781 1 2.0 ALTERNATIVE:2 ENSMUSG00000036242 Armh4 ENSMUST00000177321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041707 Tmem273 ENSMUST00000228481 ENSMUSP00000154552 TRANSLATION protein_coding start - - 42.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000041707 Tmem273 ENSMUST00000039191 ENSMUSP00000132997 TRANSLATION protein_coding - CCDS49438.1 1 95.0 0.0 0.0 3.7 123.1 1.0 3,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000041707 Tmem273 ENSMUST00000228955 - NO_TRANSLATION retained_intron ENSMUSG00000041707 Tmem273 ENSMUST00000227060 ENSMUSP00000154476 TRANSLATION protein_coding - - - 51.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0045 - 0.0 MINOR ENSMUSG00000041707 Tmem273 ENSMUST00000227871 ENSMUSP00000153805 TRANSLATION nonsense_mediated_decay - CCDS49438.1 - 95.0 0.0 0.0 3.7 123.1 1.0 3,-2 1.0 - -2.0 MINOR ENSMUSG00000021789 Sftpa1 ENSMUST00000170719 ENSMUSP00000129696 TRANSLATION protein_coding - CCDS26960.1 1 248.0 6.0 1.75 4.3 74.0 0.0 3,-2 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000021789 Sftpa1 ENSMUST00000022314 ENSMUSP00000022314 TRANSLATION protein_coding - CCDS26960.1 1 248.0 6.0 1.75 4.3 74.0 0.0 3,-2 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000021930 Spryd7 ENSMUST00000022497 ENSMUSP00000022497 TRANSLATION protein_coding - CCDS27185.1 1 196.0 0.0 4.5 24.8 61.5 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000021930 Spryd7 ENSMUST00000100496 ENSMUSP00000098065 TRANSLATION protein_coding - CCDS79330.1 1 163.0 0.0 2.5 1.2 26.5 0.0 -4,-6 0.0183 7 4.616 MINOR ENSMUSG00000021962 Dcp1a ENSMUST00000224692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000225934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000022535 ENSMUSP00000022535 TRANSLATION protein_coding - CCDS36848.1 1 602.0 0.0 4.4 1.0 209.9 0.0 -4,0 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000021962 Dcp1a ENSMUST00000225521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000225655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000225518 - NO_TRANSLATION retained_intron ENSMUSG00000021962 Dcp1a ENSMUST00000224810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000225243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000223754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000225407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000224453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000223658 ENSMUSP00000153370 TRANSLATION protein_coding start/stop - - 419.0 0.0 3.25 0.0 144.1 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000021962 Dcp1a ENSMUST00000225286 ENSMUSP00000153074 TRANSLATION nonsense_mediated_decay start - - 177.0 0.0 3.25 0.0 144.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021962 Dcp1a ENSMUST00000225124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000223568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000225196 ENSMUSP00000152897 TRANSLATION nonsense_mediated_decay - CCDS36848.1 - 602.0 0.0 4.4 1.0 209.9 0.0 -4,0 1.0 12 -2.0 MINOR ENSMUSG00000021962 Dcp1a ENSMUST00000225806 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021962 Dcp1a ENSMUST00000225923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058317 Ube2e2 ENSMUST00000135381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058317 Ube2e2 ENSMUST00000176062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058317 Ube2e2 ENSMUST00000176672 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058317 Ube2e2 ENSMUST00000176843 ENSMUSP00000135622 TRANSLATION protein_coding start/stop - 5 146.0 0.0 3.91 0.0 137.0 0.0 -4,-5 0.0017 - -2.0 MINOR ENSMUSG00000058317 Ube2e2 ENSMUST00000176931 - NO_TRANSLATION retained_intron ENSMUSG00000058317 Ube2e2 ENSMUST00000144873 - NO_TRANSLATION retained_intron ENSMUSG00000058317 Ube2e2 ENSMUST00000150727 ENSMUSP00000115738 TRANSLATION protein_coding - CCDS26838.1 1 201.0 0.0 5.16 34.7 159.7 0.0 -4,-5 1.0 - 15.748 PRINCIPAL:1 ENSMUSG00000058317 Ube2e2 ENSMUST00000124353 ENSMUSP00000114162 TRANSLATION protein_coding stop - 3 108.0 0.0 1.83 0.0 35.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058317 Ube2e2 ENSMUST00000151926 ENSMUSP00000118321 TRANSLATION protein_coding stop - 3 181.0 0.0 3.58 0.0 122.1 0.0 -4,-7 0.0006 - -2.0 MINOR ENSMUSG00000058317 Ube2e2 ENSMUST00000176555 ENSMUSP00000134919 TRANSLATION nonsense_mediated_decay - - 5 92.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058317 Ube2e2 ENSMUST00000177259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058317 Ube2e2 ENSMUST00000175643 ENSMUSP00000135674 TRANSLATION protein_coding start - 3 167.0 0.0 5.285 0.0 150.8 0.0 -4,-5 0.0154 - -2.0 MINOR ENSMUSG00000058317 Ube2e2 ENSMUST00000177398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058317 Ube2e2 ENSMUST00000076133 ENSMUSP00000075495 TRANSLATION protein_coding - CCDS26838.1 3 201.0 0.0 5.16 34.7 159.7 0.0 -4,-5 1.0 - 15.748 PRINCIPAL:1 ENSMUSG00000037759 Ptger2 ENSMUST00000227198 - NO_TRANSLATION retained_intron ENSMUSG00000037759 Ptger2 ENSMUST00000046891 ENSMUSP00000038483 TRANSLATION protein_coding - CCDS26972.1 1 362.0 0.0 0.8 8.7 87.9 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095015 Gm16434 ENSMUST00000100888 ENSMUSP00000098448 TRANSLATION protein_coding - - 1 205.0 0.0 3.0 0.0 84.4 0.0 -4,-5 0.738 - 12.0 PRINCIPAL:1 ENSMUSG00000096446 Gm8104 ENSMUST00000168165 ENSMUSP00000132509 TRANSLATION protein_coding - - 5 198.0 0.0 3.0 0.0 84.8 0.0 -4,-2 0.7585 - 12.0 PRINCIPAL:1 ENSMUSG00000022122 Ednrb ENSMUST00000227824 ENSMUSP00000154806 TRANSLATION protein_coding - CCDS27317.1 - 442.0 0.0 5.4 10.7 133.2 7.0 3,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000022122 Ednrb ENSMUST00000022718 ENSMUSP00000022718 TRANSLATION protein_coding - CCDS27317.1 1 442.0 0.0 5.4 10.7 133.2 7.0 3,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000022122 Ednrb ENSMUST00000172237 ENSMUSP00000126057 TRANSLATION protein_coding - CCDS27317.1 1 442.0 0.0 5.4 10.7 133.2 7.0 3,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000022075 Rhobtb2 ENSMUST00000022665 ENSMUSP00000022665 TRANSLATION protein_coding - CCDS27244.1 1 728.0 16.0 5.228 3.5 150.6 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000022075 Rhobtb2 ENSMUST00000223603 - NO_TRANSLATION retained_intron ENSMUSG00000022075 Rhobtb2 ENSMUST00000224535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022075 Rhobtb2 ENSMUST00000225088 - NO_TRANSLATION retained_intron ENSMUSG00000091700 Gm7876 ENSMUST00000249500 ENSMUSP00000159780 TRANSLATION protein_coding - - - 204.0 0.0 3.0 0.0 72.6 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000091700 Gm7876 ENSMUST00000171305 ENSMUSP00000129841 TRANSLATION protein_coding - - 5 263.0 0.0 4.0 0.0 72.6 0.0 -4,-5 0.7338 - 12.0 PRINCIPAL:1 ENSMUSG00000091700 Gm7876 ENSMUST00000249502 ENSMUSP00000159782 TRANSLATION nonsense_mediated_decay - - - 107.0 0.0 1.0 0.0 41.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000091700 Gm7876 ENSMUST00000169465 ENSMUSP00000127177 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 72.6 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000091700 Gm7876 ENSMUST00000249501 ENSMUSP00000159781 TRANSLATION protein_coding - - - 204.0 0.0 3.0 0.0 72.6 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000087666 Trav13-5 ENSMUST00000103671 ENSMUSP00000100448 TRANSLATION TR_V_gene stop - - 109.0 0.0 1.25 0.0 51.2 0.0 3,-1 0.8228 - -2.0 PRINCIPAL:1 ENSMUSG00000004561 Mettl17 ENSMUST00000165100 ENSMUSP00000132354 TRANSLATION nonsense_mediated_decay - - 1 236.0 10.0 5.58 0.0 59.1 0.0 -2,2 0.0 - -2.0 MINOR ENSMUSG00000004561 Mettl17 ENSMUST00000164801 - NO_TRANSLATION retained_intron ENSMUSG00000004561 Mettl17 ENSMUST00000169019 - NO_TRANSLATION retained_intron ENSMUSG00000004561 Mettl17 ENSMUST00000167984 ENSMUSP00000126425 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004561 Mettl17 ENSMUST00000168409 - NO_TRANSLATION retained_intron ENSMUSG00000004561 Mettl17 ENSMUST00000166408 - NO_TRANSLATION retained_intron ENSMUSG00000004561 Mettl17 ENSMUST00000047899 ENSMUSP00000047720 TRANSLATION protein_coding - CCDS36913.1 1 461.0 22.0 11.58 7.1 206.9 0.0 -2,2 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000004561 Mettl17 ENSMUST00000165150 - NO_TRANSLATION retained_intron ENSMUSG00000004561 Mettl17 ENSMUST00000164902 ENSMUSP00000130200 TRANSLATION protein_coding - - 5 486.0 22.0 10.83 0.0 197.0 0.0 -2,2 0.0287 4 15.906 MINOR ENSMUSG00000004561 Mettl17 ENSMUST00000168217 ENSMUSP00000130565 TRANSLATION nonsense_mediated_decay - - 5 78.0 0.0 1.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000004561 Mettl17 ENSMUST00000168413 - NO_TRANSLATION retained_intron ENSMUSG00000004561 Mettl17 ENSMUST00000077846 - NO_TRANSLATION retained_intron ENSMUSG00000004561 Mettl17 ENSMUST00000164252 ENSMUSP00000130038 TRANSLATION nonsense_mediated_decay - - 1 236.0 10.0 5.58 0.0 59.1 0.0 -2,2 0.0 2 -2.0 MINOR ENSMUSG00000004561 Mettl17 ENSMUST00000165568 ENSMUSP00000129973 TRANSLATION protein_coding start/stop - 5 280.0 22.0 7.0175 0.0 118.2 0.0 -4,-5 0.0002 3 -2.0 MINOR ENSMUSG00000004561 Mettl17 ENSMUST00000163603 - NO_TRANSLATION retained_intron ENSMUSG00000004561 Mettl17 ENSMUST00000170887 - NO_TRANSLATION retained_intron ENSMUSG00000095862 Trav6-6 ENSMUST00000103584 ENSMUSP00000100361 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.1 0.0 47.8 0.0 1,-1 0.8264 - -2.0 PRINCIPAL:1 ENSMUSG00000072596 Ear2 ENSMUST00000074839 ENSMUSP00000074386 TRANSLATION protein_coding - CCDS26968.1 1 156.0 5.0 1.0 0.1 115.1 0.0 4,-1 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000002329 Mdp1 ENSMUST00000228093 - NO_TRANSLATION retained_intron ENSMUSG00000002329 Mdp1 ENSMUST00000226659 - NO_TRANSLATION retained_intron ENSMUSG00000002329 Mdp1 ENSMUST00000002400 ENSMUSP00000002400 TRANSLATION protein_coding - CCDS27123.1 1 164.0 4.0 4.75 11.2 197.8 0.0 -4,-6 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000021965 Ska3 ENSMUST00000022536 ENSMUSP00000022536 TRANSLATION protein_coding - CCDS27160.1 1 411.0 0.0 2.75 0.1 0.0 0.0 -4,-6 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000021965 Ska3 ENSMUST00000223726 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021965 Ska3 ENSMUST00000224108 - NO_TRANSLATION retained_intron ENSMUSG00000021965 Ska3 ENSMUST00000225646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021965 Ska3 ENSMUST00000225753 - NO_TRANSLATION retained_intron ENSMUSG00000035184 Fam124a ENSMUST00000161899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035184 Fam124a ENSMUST00000162987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035184 Fam124a ENSMUST00000039064 ENSMUSP00000047681 TRANSLATION protein_coding - CCDS56963.1 5 536.0 0.0 0.0 0.4 349.0 0.0 -4,-5 1.0 7 6.0 PRINCIPAL:1 ENSMUSG00000035184 Fam124a ENSMUST00000160745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021966 Prss52 ENSMUST00000022537 ENSMUSP00000022537 TRANSLATION protein_coding - CCDS36953.1 1 321.0 5.0 2.26 0.0 203.7 0.0 3,-3 1.0 6 17.0 PRINCIPAL:1 ENSMUSG00000040284 Gzmg ENSMUST00000015578 ENSMUSP00000015578 TRANSLATION protein_coding - CCDS27144.1 1 248.0 11.0 4.0 3.5 200.4 0.0 3,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000052435 Cebpe ENSMUST00000064290 ENSMUSP00000068927 TRANSLATION protein_coding - CCDS27100.1 1 281.0 0.0 1.0 10.3 57.1 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000076855 Trav16 ENSMUST00000103667 ENSMUSP00000100444 TRANSLATION TR_V_gene stop - - 116.0 0.0 1.3 0.0 61.2 0.0 2,-1 0.8251 - -2.0 PRINCIPAL:1 ENSMUSG00000054509 Parp4 ENSMUST00000161553 ENSMUSP00000124258 TRANSLATION protein_coding - CCDS49503.1 5 1969.0 7.0 4.378 0.0 435.6 0.0 -4,-6 1.0 34 18.0 PRINCIPAL:1 ENSMUSG00000054509 Parp4 ENSMUST00000162312 - NO_TRANSLATION retained_intron ENSMUSG00000021794 Glud1 ENSMUST00000159784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021794 Glud1 ENSMUST00000162912 - NO_TRANSLATION retained_intron ENSMUSG00000021794 Glud1 ENSMUST00000161593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021794 Glud1 ENSMUST00000163955 ENSMUSP00000130934 TRANSLATION protein_coding start/stop - 5 144.0 13.0 3.58 0.0 0.0 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000021794 Glud1 ENSMUST00000022322 ENSMUSP00000022322 TRANSLATION protein_coding - CCDS26935.1 1 558.0 27.0 11.58 13.4 203.3 0.0 -2,1 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000057156 Homez ENSMUST00000142283 ENSMUSP00000117828 TRANSLATION protein_coding - CCDS27102.1 1 518.0 0.0 0.9 0.0 121.1 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000057156 Homez ENSMUST00000146642 ENSMUSP00000114619 TRANSLATION protein_coding stop - 2 114.0 0.0 0.4 0.0 21.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000057156 Homez ENSMUST00000081162 ENSMUSP00000079929 TRANSLATION protein_coding - CCDS27102.1 1 518.0 0.0 0.9 0.0 121.1 0.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000057156 Homez ENSMUST00000176259 ENSMUSP00000135648 TRANSLATION protein_coding start - 2 162.0 0.0 0.5 0.0 99.3 0.0 -4,-5 0.0021 2 -2.0 MINOR ENSMUSG00000060126 Tpt1 ENSMUST00000151751 - NO_TRANSLATION retained_intron ENSMUSG00000060126 Tpt1 ENSMUST00000142061 ENSMUSP00000121225 TRANSLATION protein_coding - - 5 138.0 0.0 3.0 5.2 210.8 0.0 -4,-5 0.0796 5 6.608 MINOR ENSMUSG00000060126 Tpt1 ENSMUST00000128889 - NO_TRANSLATION retained_intron ENSMUSG00000060126 Tpt1 ENSMUST00000154533 - NO_TRANSLATION retained_intron ENSMUSG00000060126 Tpt1 ENSMUST00000134040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060126 Tpt1 ENSMUST00000125146 - NO_TRANSLATION retained_intron ENSMUSG00000060126 Tpt1 ENSMUST00000150047 - NO_TRANSLATION retained_intron ENSMUSG00000060126 Tpt1 ENSMUST00000110894 ENSMUSP00000106519 TRANSLATION protein_coding - CCDS36980.1 1 172.0 0.0 4.08 33.8 273.2 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000072625 Gdf2 ENSMUST00000100720 ENSMUSP00000098286 TRANSLATION protein_coding - CCDS26928.1 1 428.0 0.0 1.5 6.1 163.0 0.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094766 Trav7-4 ENSMUST00000181728 ENSMUSP00000137912 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.4 0.0 68.6 0.0 3,-1 0.8213 - -2.0 PRINCIPAL:1 ENSMUSG00000062148 Ear6 ENSMUST00000074477 ENSMUSP00000074075 TRANSLATION protein_coding - CCDS27045.1 1 155.0 5.0 1.0 1.1 121.1 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000062148 Ear6 ENSMUST00000169070 ENSMUSP00000127152 TRANSLATION protein_coding - CCDS27045.1 - 155.0 5.0 1.0 1.1 121.1 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000022225 Cma1 ENSMUST00000022834 ENSMUSP00000022834 TRANSLATION protein_coding - CCDS27135.1 1 260.0 9.0 4.0 0.0 180.8 0.0 2,-2 0.5082 7 14.0 ALTERNATIVE:2 ENSMUSG00000022225 Cma1 ENSMUST00000226280 ENSMUSP00000154406 TRANSLATION protein_coding - - - 247.0 9.0 4.0 0.0 180.8 0.0 3,-2 0.7815 7 14.0 PRINCIPAL:2 ENSMUSG00000021799 Opn4 ENSMUST00000226806 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021799 Opn4 ENSMUST00000168444 ENSMUSP00000126136 TRANSLATION protein_coding - CCDS49446.1 1 466.0 14.0 6.6 0.3 194.0 7.0 -4,-5 0.2781 - 14.0 ALTERNATIVE:2 ENSMUSG00000021799 Opn4 ENSMUST00000022331 ENSMUSP00000022331 TRANSLATION protein_coding - CCDS26943.1 1 521.0 14.0 6.6 0.0 194.0 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000022157 Mcpt8 ENSMUST00000015594 ENSMUSP00000015594 TRANSLATION protein_coding - CCDS27141.1 1 247.0 6.0 4.0 0.0 187.1 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000022157 Mcpt8 ENSMUST00000225107 ENSMUSP00000153507 TRANSLATION nonsense_mediated_decay - - - 68.0 2.0 1.0 0.0 39.6 0.0 3,-2 0.0031 1 -2.0 MINOR ENSMUSG00000096149 Trav6-5 ENSMUST00000181210 ENSMUSP00000137814 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.25 0.0 52.5 0.0 1,-2 0.8252 - -2.0 PRINCIPAL:5 ENSMUSG00000096149 Trav6-5 ENSMUST00000183488 ENSMUSP00000139176 TRANSLATION TR_V_gene stop - - 111.0 0.0 1.25 0.0 52.5 0.0 1,-2 0.3434 - -2.0 ALTERNATIVE:2 ENSMUSG00000033644 Piwil2 ENSMUST00000226426 ENSMUSP00000154541 TRANSLATION protein_coding stop - - 63.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000033644 Piwil2 ENSMUST00000226229 ENSMUSP00000154615 TRANSLATION protein_coding stop - - 285.0 0.0 1.2 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000033644 Piwil2 ENSMUST00000048129 ENSMUSP00000047385 TRANSLATION protein_coding - CCDS27252.1 1 971.0 8.0 12.48 9.2 433.7 0.0 -4,-7 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000044461 Shisa2 ENSMUST00000053949 ENSMUSP00000059391 TRANSLATION protein_coding - CCDS27173.1 1 295.0 0.0 0.8 8.3 193.8 0.0 2,-4 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000044461 Shisa2 ENSMUST00000224155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022099 Dmtn ENSMUST00000228295 ENSMUSP00000154373 TRANSLATION protein_coding - - - 380.0 0.0 2.07 7.9 259.0 0.0 -4,-5 0.6617 14 8.505 MINOR ENSMUSG00000022099 Dmtn ENSMUST00000226543 ENSMUSP00000154775 TRANSLATION protein_coding stop - - 21.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022099 Dmtn ENSMUST00000228009 ENSMUSP00000153828 TRANSLATION protein_coding - CCDS27259.1 - 383.0 0.0 1.95 6.9 347.4 0.0 -4,-2 0.905 14 13.125 MINOR ENSMUSG00000022099 Dmtn ENSMUST00000227453 - NO_TRANSLATION retained_intron ENSMUSG00000022099 Dmtn ENSMUST00000227331 ENSMUSP00000154695 TRANSLATION nonsense_mediated_decay start - - 106.0 0.0 0.0 0.0 40.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022099 Dmtn ENSMUST00000022694 ENSMUSP00000022694 TRANSLATION protein_coding - - 5 405.0 0.0 2.07 9.9 356.0 0.0 -4,-2 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000022099 Dmtn ENSMUST00000110984 ENSMUSP00000106612 TRANSLATION protein_coding - CCDS27259.1 5 383.0 0.0 1.95 6.9 347.4 0.0 -4,-2 0.905 14 13.125 MINOR ENSMUSG00000022099 Dmtn ENSMUST00000228824 ENSMUSP00000154045 TRANSLATION protein_coding - - - 358.0 0.0 1.95 5.3 250.4 0.0 -4,-5 0.4032 12 7.101 MINOR ENSMUSG00000022099 Dmtn ENSMUST00000228001 ENSMUSP00000153945 TRANSLATION protein_coding - - - 358.0 0.0 1.95 5.3 250.4 0.0 -4,-5 0.4032 12 7.101 MINOR ENSMUSG00000057564 Or4e1 ENSMUST00000206520 ENSMUSP00000145649 TRANSLATION protein_coding - CCDS27061.1 2 310.0 0.0 2.75 6.9 162.7 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000057564 Or4e1 ENSMUST00000205811 ENSMUSP00000145829 TRANSLATION protein_coding stop - 3 128.0 0.0 1.0 0.0 102.5 3.0 -1,-5 0.0016 - -2.0 MINOR ENSMUSG00000090379 Gm8229 ENSMUST00000168161 ENSMUSP00000132728 TRANSLATION protein_coding - - 5 211.0 0.0 3.0 0.0 91.9 0.0 -4,-2 0.7598 - 12.0 PRINCIPAL:1 ENSMUSG00000035626 Or4e2 ENSMUST00000206437 ENSMUSP00000146274 TRANSLATION protein_coding stop - 3 156.0 0.0 2.0 0.0 96.3 6.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000035626 Or4e2 ENSMUST00000206100 ENSMUSP00000146173 TRANSLATION protein_coding - CCDS27060.1 3 308.0 0.0 3.0 9.7 170.9 10.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035626 Or4e2 ENSMUST00000215030 ENSMUSP00000150016 TRANSLATION protein_coding - CCDS27060.1 5 308.0 0.0 3.0 9.7 170.9 10.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035626 Or4e2 ENSMUST00000206718 ENSMUSP00000145551 TRANSLATION protein_coding stop - 3 125.0 0.0 1.0 0.0 76.6 5.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000035626 Or4e2 ENSMUST00000045066 ENSMUSP00000046688 TRANSLATION protein_coding - CCDS27060.1 - 308.0 0.0 3.0 9.7 170.9 10.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035626 Or4e2 ENSMUST00000205900 ENSMUSP00000145819 TRANSLATION protein_coding - CCDS27060.1 3 308.0 0.0 3.0 9.7 170.9 10.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033712 Ccar2 ENSMUST00000035612 ENSMUSP00000036924 TRANSLATION protein_coding - CCDS49534.1 1 922.0 0.0 0.0 7.9 232.6 0.0 -4,-1 1.0 17 8.0 PRINCIPAL:1 ENSMUSG00000033712 Ccar2 ENSMUST00000227589 - NO_TRANSLATION retained_intron ENSMUSG00000021987 Mtmr6 ENSMUST00000224366 ENSMUSP00000153403 TRANSLATION protein_coding - - - 655.0 7.0 9.93 6.6 460.9 0.0 -4,-5 1.0 17 12.002 MINOR ENSMUSG00000021987 Mtmr6 ENSMUST00000225574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021987 Mtmr6 ENSMUST00000224164 - NO_TRANSLATION retained_intron ENSMUSG00000021987 Mtmr6 ENSMUST00000022563 ENSMUSP00000022563 TRANSLATION protein_coding - CCDS27176.1 1 617.0 7.0 10.93 0.0 477.4 0.0 -4,-5 0.935 17 14.0 PRINCIPAL:1 ENSMUSG00000021743 Fezf2 ENSMUST00000224023 ENSMUSP00000153647 TRANSLATION protein_coding - - - 373.0 14.0 2.0 0.0 73.7 0.0 -4,-7 0.0 - 7.698 MINOR ENSMUSG00000021743 Fezf2 ENSMUST00000022262 ENSMUSP00000022262 TRANSLATION protein_coding - CCDS26818.1 1 455.0 24.0 3.0 10.7 112.1 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000021743 Fezf2 ENSMUST00000224714 ENSMUSP00000153090 TRANSLATION protein_coding - CCDS26818.1 - 455.0 24.0 3.0 10.7 112.1 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000022108 Itm2b ENSMUST00000228637 ENSMUSP00000154011 TRANSLATION protein_coding - - - 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000022108 Itm2b ENSMUST00000227454 ENSMUSP00000153948 TRANSLATION protein_coding stop - - 144.0 0.0 0.0 0.0 53.1 0.0 1,-3 0.0039 5 -2.0 MINOR ENSMUSG00000022108 Itm2b ENSMUST00000228707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022108 Itm2b ENSMUST00000022704 ENSMUSP00000022704 TRANSLATION protein_coding - CCDS27269.1 1 266.0 0.0 0.0 17.0 72.8 0.0 -4,-7 1.0 10 10.0 PRINCIPAL:1 ENSMUSG00000022108 Itm2b ENSMUST00000226722 - NO_TRANSLATION retained_intron ENSMUSG00000094706 Gm10338 ENSMUST00000096148 ENSMUSP00000093862 TRANSLATION protein_coding - - 2 204.0 0.0 3.0 0.0 76.5 0.0 -4,-5 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000094016 Trav15-1-dv6-1 ENSMUST00000200101 ENSMUSP00000143712 TRANSLATION TR_V_gene stop - - 117.0 0.0 1.0 0.0 51.3 0.0 2,-2 0.827 - -2.0 PRINCIPAL:1 ENSMUSG00000091122 Gm8247 ENSMUST00000170094 ENSMUSP00000132825 TRANSLATION protein_coding - - 5 211.0 0.0 3.0 0.0 87.3 0.0 -4,-2 0.7598 - 12.0 PRINCIPAL:1 ENSMUSG00000121906 Dusp13a ENSMUST00000075040 ENSMUSP00000074553 TRANSLATION protein_coding - CCDS36821.1 1 188.0 7.0 3.33 5.5 101.8 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000121906 Dusp13a ENSMUST00000127051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000121906 Dusp13a ENSMUST00000153071 ENSMUSP00000139140 TRANSLATION protein_coding start - 3 55.0 0.0 1.0 0.0 45.8 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000079378 Gm8279 ENSMUST00000112767 ENSMUSP00000108387 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 76.5 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000079378 Gm8279 ENSMUST00000165713 ENSMUSP00000131107 TRANSLATION protein_coding - - 5 263.0 0.0 4.0 0.0 76.5 0.0 -4,-5 0.7338 - 12.0 PRINCIPAL:1 ENSMUSG00000033186 Mzt1 ENSMUST00000227948 ENSMUSP00000154225 TRANSLATION protein_coding - - - 41.0 0.0 1.33 0.0 51.4 0.0 -4,-5 0.0 1 6.582 MINOR ENSMUSG00000033186 Mzt1 ENSMUST00000042662 ENSMUSP00000037557 TRANSLATION protein_coding - CCDS49554.1 1 78.0 0.0 2.58 0.1 88.4 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000033186 Mzt1 ENSMUST00000227197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033186 Mzt1 ENSMUST00000228445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021950 Anxa8 ENSMUST00000120077 ENSMUSP00000113662 TRANSLATION protein_coding - CCDS70565.1 1 301.0 10.0 8.995 0.0 272.8 0.0 -4,-5 0.015 11 10.908 MINOR ENSMUSG00000021950 Anxa8 ENSMUST00000022519 ENSMUSP00000022519 TRANSLATION protein_coding - CCDS26932.1 1 327.0 14.0 9.745 12.2 321.6 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000021974 Fgf9 ENSMUST00000022545 ENSMUSP00000022545 TRANSLATION protein_coding - CCDS27164.1 1 208.0 7.0 3.63 29.7 160.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000021974 Fgf9 ENSMUST00000166770 ENSMUSP00000130066 TRANSLATION protein_coding stop - 3 30.0 0.0 1.08 0.0 37.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021974 Fgf9 ENSMUST00000074654 ENSMUSP00000088143 TRANSLATION protein_coding - - 1 91.0 6.0 2.08 2.0 82.6 0.0 -4,-5 0.0209 - 9.536 MINOR ENSMUSG00000021974 Fgf9 ENSMUST00000165526 ENSMUSP00000131358 TRANSLATION protein_coding - - 1 91.0 6.0 2.08 2.0 82.6 0.0 -4,-5 0.0209 - 9.536 MINOR ENSMUSG00000010406 Mrpl52 ENSMUST00000196273 ENSMUSP00000142643 TRANSLATION protein_coding start - 5 68.0 0.0 1.25 0.0 0.0 0.0 -4,-2 0.0127 - -2.0 MINOR ENSMUSG00000010406 Mrpl52 ENSMUST00000199153 - NO_TRANSLATION retained_intron ENSMUSG00000010406 Mrpl52 ENSMUST00000199689 - NO_TRANSLATION retained_intron ENSMUSG00000010406 Mrpl52 ENSMUST00000010550 ENSMUSP00000010550 TRANSLATION protein_coding - CCDS27088.1 1 121.0 0.0 3.58 9.3 0.0 0.0 -3,1 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000010406 Mrpl52 ENSMUST00000200217 - NO_TRANSLATION retained_intron ENSMUSG00000010406 Mrpl52 ENSMUST00000228871 - NO_TRANSLATION retained_intron ENSMUSG00000010406 Mrpl52 ENSMUST00000199195 ENSMUSP00000142555 TRANSLATION protein_coding - - 1 63.0 0.0 2.0 4.2 0.0 0.0 -4,-2 0.3524 1 3.996 MINOR ENSMUSG00000091722 Siah3 ENSMUST00000164848 ENSMUSP00000130827 TRANSLATION protein_coding - CCDS49540.1 1 268.0 5.0 1.0 7.8 147.9 0.0 -4,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000035566 Pcdh17 ENSMUST00000071370 ENSMUSP00000071325 TRANSLATION protein_coding - CCDS27304.1 1 1157.0 46.0 0.64 7.9 325.2 0.0 2,-2 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000035566 Pcdh17 ENSMUST00000226362 - NO_TRANSLATION retained_intron ENSMUSG00000114378 Gm49355 ENSMUST00000225871 ENSMUSP00000153106 TRANSLATION protein_coding,RT - - - 122.0 0.0 1.75 0.0 61.5 0.0 -4,-5 0.7472 - -2.0 PRINCIPAL:1 ENSMUSG00000090868 Trav9d-4 ENSMUST00000167409 ENSMUSP00000132136 TRANSLATION TR_V_gene stop - - 102.0 0.0 0.64 0.0 45.2 0.0 4,-1 0.3427 - -2.0 ALTERNATIVE:2 ENSMUSG00000090868 Trav9d-4 ENSMUST00000200548 ENSMUSP00000143411 TRANSLATION TR_V_gene stop - - 103.0 0.0 0.64 0.0 45.2 0.0 3,-1 0.8106 - -2.0 PRINCIPAL:5 ENSMUSG00000021838 Samd4 ENSMUST00000140571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021838 Samd4 ENSMUST00000125688 ENSMUSP00000115569 TRANSLATION protein_coding - CCDS79301.1 1 302.0 0.0 0.0 3.2 0.0 0.0 -4,-7 0.2169 7 0.758 MINOR ENSMUSG00000021838 Samd4 ENSMUST00000100672 ENSMUSP00000098237 TRANSLATION protein_coding - CCDS26983.1 1 623.0 0.0 1.95 6.8 33.0 0.0 -4,-6 0.8296 13 9.334 ALTERNATIVE:1 ENSMUSG00000021838 Samd4 ENSMUST00000228404 ENSMUSP00000153846 TRANSLATION protein_coding - - - 522.0 0.0 1.95 1.0 33.0 0.0 -4,-5 0.1684 12 7.334 MINOR ENSMUSG00000021838 Samd4 ENSMUST00000137543 ENSMUSP00000114621 TRANSLATION protein_coding - CCDS26983.1 1 623.0 0.0 1.95 6.8 33.0 0.0 -4,-6 0.8296 13 9.334 ALTERNATIVE:1 ENSMUSG00000021838 Samd4 ENSMUST00000130046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021838 Samd4 ENSMUST00000227848 ENSMUSP00000154727 TRANSLATION nonsense_mediated_decay start - - 114.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021838 Samd4 ENSMUST00000141767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021838 Samd4 ENSMUST00000022386 ENSMUSP00000022386 TRANSLATION protein_coding - CCDS26982.1 1 711.0 0.0 1.95 6.8 35.2 0.0 -4,-6 1.0 14 10.0 PRINCIPAL:3 ENSMUSG00000021838 Samd4 ENSMUST00000226684 - NO_TRANSLATION retained_intron ENSMUSG00000021838 Samd4 ENSMUST00000125113 ENSMUSP00000122833 TRANSLATION protein_coding - CCDS49468.1 1 610.0 0.0 1.95 3.6 35.2 0.0 -4,-5 0.6355 13 8.896 MINOR ENSMUSG00000033446 Lpar6 ENSMUST00000044405 ENSMUSP00000042327 TRANSLATION protein_coding - CCDS27268.1 - 344.0 0.0 1.0 18.9 171.0 0.0 -3,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000022018 Rgcc ENSMUST00000022595 ENSMUSP00000022595 TRANSLATION protein_coding - CCDS49552.1 1 137.0 0.0 0.0 5.6 221.7 0.0 -2,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000096039 D830030K20Rik ENSMUST00000225885 ENSMUSP00000153088 TRANSLATION protein_coding - CCDS36793.1 - 146.0 0.0 3.25 0.0 48.4 0.0 -4,-5 0.006 - 8.622 MINOR ENSMUSG00000096039 D830030K20Rik ENSMUST00000223972 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096039 D830030K20Rik ENSMUST00000112797 ENSMUSP00000108417 TRANSLATION protein_coding - - 1 218.0 0.0 4.0 0.0 70.5 0.0 -4,-5 0.7384 - 12.0 PRINCIPAL:1 ENSMUSG00000071361 Mcpt9 ENSMUST00000095798 ENSMUSP00000093476 TRANSLATION protein_coding - CCDS27138.1 1 246.0 11.0 4.0 0.1 192.0 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000049960 Mrps16 ENSMUST00000224286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049960 Mrps16 ENSMUST00000061444 ENSMUSP00000055619 TRANSLATION protein_coding - CCDS36817.1 1 135.0 0.0 2.0 11.9 80.1 0.0 -4,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000095643 Trav13d-3 ENSMUST00000179512 ENSMUSP00000136474 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 56.7 0.0 4,-1 0.8251 - -2.0 PRINCIPAL:1 ENSMUSG00000075502 Kbtbd6 ENSMUST00000226192 ENSMUSP00000154099 TRANSLATION protein_coding - CCDS27299.2 - 486.0 0.0 0.2 0.1 148.1 0.0 -4,-2 0.5176 - 8.0 ALTERNATIVE:2 ENSMUSG00000075502 Kbtbd6 ENSMUST00000100359 ENSMUSP00000097929 TRANSLATION protein_coding - - - 549.0 0.0 0.2 0.0 148.1 0.0 -4,-2 0.8347 - 8.0 PRINCIPAL:2 ENSMUSG00000060373 Hnrnpc ENSMUST00000228045 - NO_TRANSLATION retained_intron ENSMUSG00000060373 Hnrnpc ENSMUST00000226993 ENSMUSP00000154182 TRANSLATION protein_coding stop - - 80.0 0.0 1.75 0.0 52.5 0.0 -4,-7 0.0088 4 -2.0 MINOR ENSMUSG00000060373 Hnrnpc ENSMUST00000228198 ENSMUSP00000154212 TRANSLATION protein_coding - - - 306.0 0.0 3.75 15.1 51.4 0.0 -4,-7 0.9289 13 12.0 ALTERNATIVE:1 ENSMUSG00000060373 Hnrnpc ENSMUST00000228748 ENSMUSP00000154166 TRANSLATION protein_coding - - - 293.0 0.0 3.75 12.2 51.4 0.0 -4,-7 0.8479 14 11.176 ALTERNATIVE:1 ENSMUSG00000060373 Hnrnpc ENSMUST00000228232 ENSMUSP00000154619 TRANSLATION protein_coding - - - 293.0 0.0 3.75 12.2 51.4 0.0 -4,-7 0.8479 14 11.176 ALTERNATIVE:1 ENSMUSG00000060373 Hnrnpc ENSMUST00000227242 ENSMUSP00000154757 TRANSLATION protein_coding - - - 300.0 0.0 3.75 10.2 51.4 0.0 -4,-7 0.8137 15 10.608 MINOR ENSMUSG00000060373 Hnrnpc ENSMUST00000111610 ENSMUSP00000107237 TRANSLATION protein_coding - CCDS36917.1 1 313.0 0.0 3.75 9.1 51.4 0.0 -4,-7 1.0 14 10.296 MINOR ENSMUSG00000060373 Hnrnpc ENSMUST00000227195 ENSMUSP00000154537 TRANSLATION protein_coding stop - - 117.0 0.0 2.665 0.0 51.4 0.0 -4,-7 0.0044 6 -2.0 MINOR ENSMUSG00000060373 Hnrnpc ENSMUST00000228815 ENSMUSP00000154347 TRANSLATION protein_coding stop - - 28.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000060373 Hnrnpc ENSMUST00000228786 - NO_TRANSLATION retained_intron ENSMUSG00000060373 Hnrnpc ENSMUST00000227458 ENSMUSP00000154238 TRANSLATION protein_coding - - - 292.0 0.0 3.75 13.1 51.4 0.0 -4,-7 0.8547 14 11.432 PRINCIPAL:4 ENSMUSG00000060373 Hnrnpc ENSMUST00000227536 ENSMUSP00000154737 TRANSLATION protein_coding - - - 300.0 0.0 3.75 10.2 51.4 0.0 -4,-7 0.8137 15 10.608 MINOR ENSMUSG00000057179 Or11h4b ENSMUST00000205373 ENSMUSP00000145625 TRANSLATION protein_coding - CCDS27022.1 5 313.0 0.0 1.5 8.9 178.0 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057179 Or11h4b ENSMUST00000213238 ENSMUSP00000149081 TRANSLATION protein_coding - CCDS27022.1 3 313.0 0.0 1.5 8.9 178.0 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057179 Or11h4b ENSMUST00000078075 ENSMUSP00000077220 TRANSLATION protein_coding - CCDS27022.1 - 313.0 0.0 1.5 8.9 178.0 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057179 Or11h4b ENSMUST00000205897 ENSMUSP00000145956 TRANSLATION protein_coding stop - 5 17.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047098 Rnf31 ENSMUST00000140178 ENSMUSP00000118215 TRANSLATION protein_coding start - 5 912.0 21.0 14.8 0.0 132.1 0.0 -4,-7 0.0087 16 -2.0 MINOR ENSMUSG00000047098 Rnf31 ENSMUST00000126544 - NO_TRANSLATION retained_intron ENSMUSG00000047098 Rnf31 ENSMUST00000227664 - NO_TRANSLATION retained_intron ENSMUSG00000047098 Rnf31 ENSMUST00000019443 ENSMUSP00000019443 TRANSLATION protein_coding - CCDS27118.1 1 1066.0 21.0 17.8 5.1 256.4 0.0 -4,-5 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000047098 Rnf31 ENSMUST00000227708 ENSMUSP00000154756 TRANSLATION nonsense_mediated_decay start - - 103.0 7.0 2.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000047098 Rnf31 ENSMUST00000133903 - NO_TRANSLATION retained_intron ENSMUSG00000047098 Rnf31 ENSMUST00000137296 - NO_TRANSLATION retained_intron ENSMUSG00000034248 Slc25a37 ENSMUST00000183882 ENSMUSP00000139178 TRANSLATION protein_coding stop - 3 100.0 0.0 0.32 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034248 Slc25a37 ENSMUST00000184914 ENSMUSP00000139104 TRANSLATION nonsense_mediated_decay - - 1 182.0 0.0 1.32 0.0 74.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034248 Slc25a37 ENSMUST00000037064 ENSMUSP00000039990 TRANSLATION protein_coding - CCDS27238.1 1 338.0 0.0 2.82 11.2 213.3 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000034248 Slc25a37 ENSMUST00000184497 - NO_TRANSLATION retained_intron ENSMUSG00000010376 Nedd8 ENSMUST00000010520 ENSMUSP00000010520 TRANSLATION protein_coding - CCDS49498.1 1 81.0 0.0 2.58 13.9 95.5 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000010376 Nedd8 ENSMUST00000227157 - NO_TRANSLATION retained_intron ENSMUSG00000010376 Nedd8 ENSMUST00000228414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010376 Nedd8 ENSMUST00000227250 ENSMUSP00000154561 TRANSLATION protein_coding start - - 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022008 Gpalpp1 ENSMUST00000022585 ENSMUSP00000022585 TRANSLATION protein_coding - CCDS27283.1 1 346.0 0.0 0.3 13.8 94.1 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000058126 Tpm3-rs7 ENSMUST00000072359 ENSMUSP00000072197 TRANSLATION protein_coding - - - 248.0 0.0 1.0 27.0 290.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022056 Adam7 ENSMUST00000022640 ENSMUSP00000022640 TRANSLATION protein_coding - CCDS27234.1 1 789.0 19.0 7.475 0.1 484.6 0.0 -4,-6 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000022056 Adam7 ENSMUST00000128069 - NO_TRANSLATION retained_intron ENSMUSG00000022056 Adam7 ENSMUST00000225673 - NO_TRANSLATION retained_intron ENSMUSG00000046049 Rp1l1 ENSMUST00000224314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046049 Rp1l1 ENSMUST00000058229 ENSMUSP00000055449 TRANSLATION protein_coding - CCDS36951.1 1 1859.0 0.0 0.2 0.0 98.9 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000035896 Rnase1 ENSMUST00000080126 ENSMUSP00000079025 TRANSLATION protein_coding - CCDS27038.1 1 149.0 5.0 1.0 2.9 145.6 0.0 3,-2 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000079410 Gm2897 ENSMUST00000166494 ENSMUSP00000126277 TRANSLATION protein_coding - CCDS49374.1 1 172.0 0.0 3.0 0.0 69.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035296 Sgcg ENSMUST00000121148 ENSMUSP00000112576 TRANSLATION protein_coding - CCDS27181.1 1 291.0 0.0 6.15 25.9 261.0 1.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000035296 Sgcg ENSMUST00000077954 ENSMUSP00000077106 TRANSLATION protein_coding - CCDS27181.1 1 291.0 0.0 6.15 25.9 261.0 1.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000035296 Sgcg ENSMUST00000129886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095912 Gm3317 ENSMUST00000179659 ENSMUSP00000137175 TRANSLATION protein_coding - - 1 172.0 0.0 3.0 0.0 68.1 0.0 -4,-5 0.7361 - 12.0 PRINCIPAL:1 ENSMUSG00000022226 Mcpt2 ENSMUST00000015576 ENSMUSP00000015576 TRANSLATION protein_coding - CCDS27139.1 1 244.0 10.0 4.0 0.1 201.4 0.0 3,-2 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000039367 Sec24c ENSMUST00000224793 - NO_TRANSLATION retained_intron ENSMUSG00000039367 Sec24c ENSMUST00000224876 ENSMUSP00000153317 TRANSLATION nonsense_mediated_decay - - - 90.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000039367 Sec24c ENSMUST00000224061 - NO_TRANSLATION retained_intron ENSMUSG00000039367 Sec24c ENSMUST00000224963 - NO_TRANSLATION retained_intron ENSMUSG00000039367 Sec24c ENSMUST00000224791 ENSMUSP00000153039 TRANSLATION nonsense_mediated_decay start - - 174.0 0.0 3.93 0.0 177.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000039367 Sec24c ENSMUST00000225903 - NO_TRANSLATION retained_intron ENSMUSG00000039367 Sec24c ENSMUST00000228545 ENSMUSP00000154291 TRANSLATION protein_coding start/stop - - 239.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000039367 Sec24c ENSMUST00000048657 ENSMUSP00000045955 TRANSLATION protein_coding - CCDS26850.1 1 1096.0 4.0 18.08 11.0 556.1 0.0 -4,-5 1.0 25 18.7 PRINCIPAL:1 ENSMUSG00000039367 Sec24c ENSMUST00000224492 ENSMUSP00000153455 TRANSLATION protein_coding stop - - 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039367 Sec24c ENSMUST00000223751 ENSMUSP00000153434 TRANSLATION protein_coding - - - 1020.0 4.0 18.23 0.0 556.1 0.0 -4,-5 0.1743 26 16.0 MINOR ENSMUSG00000039367 Sec24c ENSMUST00000224722 - NO_TRANSLATION retained_intron ENSMUSG00000039367 Sec24c ENSMUST00000224754 ENSMUSP00000152990 TRANSLATION protein_coding stop - - 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039367 Sec24c ENSMUST00000224718 - NO_TRANSLATION retained_intron ENSMUSG00000039367 Sec24c ENSMUST00000225108 ENSMUSP00000152917 TRANSLATION protein_coding stop - - 168.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039367 Sec24c ENSMUST00000225566 - NO_TRANSLATION retained_intron ENSMUSG00000042286 Stab1 ENSMUST00000036618 ENSMUSP00000046199 TRANSLATION protein_coding - CCDS26906.1 1 2571.0 0.0 13.692 4.6 524.1 0.0 3,-2 1.0 46 14.0 PRINCIPAL:1 ENSMUSG00000042286 Stab1 ENSMUST00000161464 - NO_TRANSLATION retained_intron ENSMUSG00000042286 Stab1 ENSMUST00000159480 - NO_TRANSLATION retained_intron ENSMUSG00000042286 Stab1 ENSMUST00000159532 - NO_TRANSLATION retained_intron ENSMUSG00000042286 Stab1 ENSMUST00000161129 - NO_TRANSLATION retained_intron ENSMUSG00000042286 Stab1 ENSMUST00000162169 - NO_TRANSLATION retained_intron ENSMUSG00000042286 Stab1 ENSMUST00000160720 - NO_TRANSLATION retained_intron ENSMUSG00000042286 Stab1 ENSMUST00000159757 - NO_TRANSLATION retained_intron ENSMUSG00000042286 Stab1 ENSMUST00000159249 ENSMUSP00000125542 TRANSLATION protein_coding start/stop - 5 197.0 0.0 1.54 0.0 21.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000042286 Stab1 ENSMUST00000162763 - NO_TRANSLATION retained_intron ENSMUSG00000042286 Stab1 ENSMUST00000159208 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042286 Stab1 ENSMUST00000160024 ENSMUSP00000125239 TRANSLATION protein_coding start - 3 92.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042286 Stab1 ENSMUST00000161631 - NO_TRANSLATION retained_intron ENSMUSG00000017491 Rarb ENSMUST00000063750 ENSMUSP00000067694 TRANSLATION protein_coding - CCDS26834.1 1 448.0 53.0 8.08 18.1 199.2 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000017491 Rarb ENSMUST00000225594 ENSMUSP00000153178 TRANSLATION nonsense_mediated_decay - - - 164.0 9.0 2.33 0.0 114.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000017491 Rarb ENSMUST00000223576 ENSMUSP00000153098 TRANSLATION nonsense_mediated_decay - - - 61.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000017491 Rarb ENSMUST00000223976 ENSMUSP00000153519 TRANSLATION protein_coding stop - - 139.0 4.0 1.0 0.0 42.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000017491 Rarb ENSMUST00000225921 ENSMUSP00000152980 TRANSLATION protein_coding - - - 402.0 37.0 7.08 1.3 155.2 0.0 -4,-6 0.0238 - 7.434 MINOR ENSMUSG00000017491 Rarb ENSMUST00000225245 ENSMUSP00000153454 TRANSLATION protein_coding stop - - 74.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000017491 Rarb ENSMUST00000225356 - NO_TRANSLATION retained_intron ENSMUSG00000094370 Gm3373 ENSMUST00000249419 ENSMUSP00000159756 TRANSLATION protein_coding - - - 89.0 0.0 2.0 0.0 71.6 0.0 -4,-5 0.0011 - 9.69 MINOR ENSMUSG00000094370 Gm3373 ENSMUST00000177556 ENSMUSP00000135906 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 75.5 0.0 -4,-5 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000094370 Gm3373 ENSMUST00000249418 ENSMUSP00000159755 TRANSLATION protein_coding - - - 205.0 0.0 3.0 0.0 75.5 0.0 -4,-5 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000075571 Defb30 ENSMUST00000111208 ENSMUSP00000106839 TRANSLATION protein_coding - - 1 76.0 0.0 1.0 0.0 39.2 0.0 -3,-5 0.115 - 9.426 MINOR ENSMUSG00000075571 Defb30 ENSMUST00000100490 ENSMUSP00000098059 TRANSLATION protein_coding - CCDS36947.1 1 75.0 0.0 1.75 1.2 39.2 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000075571 Defb30 ENSMUST00000111209 ENSMUSP00000106840 TRANSLATION protein_coding - - 1 76.0 0.0 1.0 0.0 39.2 0.0 -3,-5 0.115 - 9.426 MINOR ENSMUSG00000075571 Defb30 ENSMUST00000111207 ENSMUSP00000106838 TRANSLATION protein_coding - CCDS36947.1 1 75.0 0.0 1.75 1.2 39.2 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000042354 Gnl3 ENSMUST00000227467 ENSMUSP00000154745 TRANSLATION protein_coding stop - - 146.0 0.0 0.0 0.0 80.5 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000042354 Gnl3 ENSMUST00000037739 ENSMUSP00000047119 TRANSLATION protein_coding - CCDS26905.1 1 538.0 12.0 3.43 2.2 119.4 0.0 -4,-5 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000042354 Gnl3 ENSMUST00000227869 - NO_TRANSLATION retained_intron ENSMUSG00000042354 Gnl3 ENSMUST00000227170 - NO_TRANSLATION retained_intron ENSMUSG00000042354 Gnl3 ENSMUST00000227087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042354 Gnl3 ENSMUST00000228713 - NO_TRANSLATION retained_intron ENSMUSG00000042354 Gnl3 ENSMUST00000228341 ENSMUSP00000153981 TRANSLATION protein_coding stop - - 156.0 4.0 1.65 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000042354 Gnl3 ENSMUST00000228774 - NO_TRANSLATION retained_intron ENSMUSG00000042354 Gnl3 ENSMUST00000226740 ENSMUSP00000154477 TRANSLATION nonsense_mediated_decay - - - 136.0 0.0 0.0 0.0 80.5 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000042354 Gnl3 ENSMUST00000228739 - NO_TRANSLATION retained_intron ENSMUSG00000042354 Gnl3 ENSMUST00000228427 - NO_TRANSLATION retained_intron ENSMUSG00000042354 Gnl3 ENSMUST00000226379 ENSMUSP00000154428 TRANSLATION protein_coding start - - 159.0 0.0 0.8 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000042354 Gnl3 ENSMUST00000227389 - NO_TRANSLATION retained_intron ENSMUSG00000042354 Gnl3 ENSMUST00000226220 - NO_TRANSLATION retained_intron ENSMUSG00000054423 Cadps ENSMUST00000112658 ENSMUSP00000108277 TRANSLATION protein_coding - CCDS36807.1 1 1355.0 0.0 5.986 0.4 153.0 0.0 -4,-5 0.8785 41 7.472 PRINCIPAL:3 ENSMUSG00000054423 Cadps ENSMUST00000067491 ENSMUSP00000064706 TRANSLATION protein_coding - CCDS36806.1 1 1361.0 0.0 6.25 0.4 156.2 0.0 -4,-5 1.0 39 7.0 ALTERNATIVE:2 ENSMUSG00000054423 Cadps ENSMUST00000224882 ENSMUSP00000153426 TRANSLATION nonsense_mediated_decay - - - 867.0 0.0 2.75 0.0 34.7 0.0 -4,-5 0.007 22 -2.0 MINOR ENSMUSG00000054423 Cadps ENSMUST00000224704 - NO_TRANSLATION retained_intron ENSMUSG00000054423 Cadps ENSMUST00000224140 - NO_TRANSLATION retained_intron ENSMUSG00000054423 Cadps ENSMUST00000223637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054423 Cadps ENSMUST00000224106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054423 Cadps ENSMUST00000224581 ENSMUSP00000153630 TRANSLATION protein_coding start/stop - - 402.0 0.0 3.5 0.0 114.8 0.0 -4,-5 0.0 16 -2.0 MINOR ENSMUSG00000054423 Cadps ENSMUST00000225807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054423 Cadps ENSMUST00000225606 - NO_TRANSLATION retained_intron ENSMUSG00000076900 Traj29 ENSMUST00000103712 ENSMUSP00000143317 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000096653 Trav15d-1-dv6d-1 ENSMUST00000103616 ENSMUSP00000100393 TRANSLATION TR_V_gene stop - - 124.0 0.0 1.0 0.0 52.7 0.0 0,-3 0.791 - -2.0 PRINCIPAL:1 ENSMUSG00000090691 Gm3667 ENSMUST00000249454 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090691 Gm3667 ENSMUST00000249453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090691 Gm3667 ENSMUST00000171906 ENSMUSP00000133107 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 75.5 0.0 -4,-5 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000090691 Gm3667 ENSMUST00000249452 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022119 Rbm26 ENSMUST00000022715 ENSMUSP00000022715 TRANSLATION protein_coding - - 5 1007.0 4.0 0.0 9.9 37.7 0.0 -4,-5 0.8261 22 9.0 PRINCIPAL:4 ENSMUSG00000022119 Rbm26 ENSMUST00000172122 ENSMUSP00000126804 TRANSLATION protein_coding start - 2 210.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 7 -2.0 MINOR ENSMUSG00000022119 Rbm26 ENSMUST00000163499 ENSMUSP00000128197 TRANSLATION protein_coding - - 1 1001.0 4.0 0.0 0.0 37.7 0.0 -4,-5 0.1863 22 6.0 MINOR ENSMUSG00000022119 Rbm26 ENSMUST00000163545 ENSMUSP00000126414 TRANSLATION protein_coding - - 5 1009.0 4.0 0.0 9.9 37.7 0.0 -4,-5 0.8125 22 9.0 ALTERNATIVE:1 ENSMUSG00000022119 Rbm26 ENSMUST00000100327 ENSMUSP00000097901 TRANSLATION protein_coding - CCDS37003.1 1 983.0 4.0 0.0 9.9 37.7 0.0 -4,-5 1.0 21 9.0 ALTERNATIVE:1 ENSMUSG00000076778 Trav13d-1 ENSMUST00000103588 ENSMUSP00000100365 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.0 0.0 54.5 0.0 4,-1 0.8257 - -2.0 PRINCIPAL:1 ENSMUSG00000021940 Ptpn20 ENSMUST00000226512 ENSMUSP00000153829 TRANSLATION nonsense_mediated_decay - - - 133.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021940 Ptpn20 ENSMUST00000022508 ENSMUSP00000022508 TRANSLATION protein_coding - CCDS36870.1 1 426.0 11.0 5.5 0.1 267.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000021940 Ptpn20 ENSMUST00000227887 ENSMUSP00000154272 TRANSLATION nonsense_mediated_decay - - - 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045691 Thtpa ENSMUST00000050575 ENSMUSP00000056026 TRANSLATION protein_coding - CCDS27108.1 1 224.0 0.0 2.0 1.5 143.9 0.0 -4,-5 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000076888 Traj42 ENSMUST00000103700 ENSMUSP00000143239 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000096038 Trav13n-3 ENSMUST00000179580 ENSMUSP00000136279 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.0 0.0 56.7 0.0 4,-1 0.8251 - -2.0 PRINCIPAL:1 ENSMUSG00000051506 Wdfy4 ENSMUST00000061753 ENSMUSP00000057556 TRANSLATION protein_coding - CCDS49441.1 5 3024.0 0.0 8.2525 0.0 465.2 0.0 -4,-5 0.8257 41 8.0 ALTERNATIVE:2 ENSMUSG00000051506 Wdfy4 ENSMUST00000132153 ENSMUSP00000120118 TRANSLATION protein_coding start - 3 60.0 0.0 0.4125 0.0 0.0 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000051506 Wdfy4 ENSMUST00000159606 ENSMUSP00000124728 TRANSLATION protein_coding stop - 3 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000051506 Wdfy4 ENSMUST00000130509 ENSMUSP00000117068 TRANSLATION protein_coding - - 5 3183.0 0.0 8.2525 0.1 465.2 0.0 -4,-5 1.0 43 8.0 PRINCIPAL:3 ENSMUSG00000014813 Stc1 ENSMUST00000014957 ENSMUSP00000014957 TRANSLATION protein_coding - CCDS27236.1 1 247.0 0.0 2.8 14.5 337.4 0.0 2,-2 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000021830 Txndc16 ENSMUST00000226879 ENSMUSP00000153939 TRANSLATION nonsense_mediated_decay - - - 88.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000021830 Txndc16 ENSMUST00000153383 ENSMUSP00000154550 TRANSLATION protein_coding - - 1 88.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 1 0.0 MINOR ENSMUSG00000021830 Txndc16 ENSMUST00000022377 ENSMUSP00000022377 TRANSLATION protein_coding - CCDS26973.1 1 819.0 0.0 2.1325 6.3 139.2 0.0 -3,-5 1.0 10 10.0 PRINCIPAL:4 ENSMUSG00000021830 Txndc16 ENSMUST00000123118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021830 Txndc16 ENSMUST00000150648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021830 Txndc16 ENSMUST00000128484 ENSMUSP00000154808 TRANSLATION protein_coding - - 1 268.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0007 4 0.0 MINOR ENSMUSG00000021830 Txndc16 ENSMUST00000123879 ENSMUSP00000123023 TRANSLATION protein_coding - CCDS79300.1 1 820.0 0.0 2.1325 6.3 139.2 0.0 -3,-5 0.9985 10 10.0 ALTERNATIVE:1 ENSMUSG00000021830 Txndc16 ENSMUST00000143609 ENSMUSP00000122128 TRANSLATION protein_coding stop - 3 100.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 1 -2.0 MINOR ENSMUSG00000021830 Txndc16 ENSMUST00000147853 ENSMUSP00000154077 TRANSLATION protein_coding - - 1 268.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0007 4 0.0 MINOR ENSMUSG00000021830 Txndc16 ENSMUST00000139526 ENSMUSP00000120287 TRANSLATION protein_coding - CCDS79300.1 1 820.0 0.0 2.1325 6.3 139.2 0.0 -3,-5 0.9985 10 10.0 ALTERNATIVE:1 ENSMUSG00000021830 Txndc16 ENSMUST00000156600 ENSMUSP00000154370 TRANSLATION protein_coding start - 2 119.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000021830 Txndc16 ENSMUST00000227333 ENSMUSP00000153716 TRANSLATION protein_coding start - - 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000091472 Gm3739 ENSMUST00000249472 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091472 Gm3739 ENSMUST00000249469 ENSMUSP00000159766 TRANSLATION protein_coding - - - 148.0 0.0 3.0 0.0 69.6 0.0 -4,-5 0.0267 - 7.0 ALTERNATIVE:2 ENSMUSG00000091472 Gm3739 ENSMUST00000249471 ENSMUSP00000159768 TRANSLATION protein_coding - - - 227.0 0.0 3.0 0.0 74.0 0.0 -4,-5 0.7384 - 8.0 PRINCIPAL:2 ENSMUSG00000091472 Gm3739 ENSMUST00000249470 ENSMUSP00000159767 TRANSLATION protein_coding - - - 203.0 0.0 3.0 0.0 74.0 0.0 -4,-5 0.0135 - 8.0 ALTERNATIVE:2 ENSMUSG00000091472 Gm3739 ENSMUST00000165744 ENSMUSP00000127597 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 74.0 0.0 -4,-5 0.0149 - 8.0 ALTERNATIVE:2 ENSMUSG00000021832 Psmc6 ENSMUST00000228870 - NO_TRANSLATION retained_intron ENSMUSG00000021832 Psmc6 ENSMUST00000226739 - NO_TRANSLATION retained_intron ENSMUSG00000021832 Psmc6 ENSMUST00000228026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021832 Psmc6 ENSMUST00000227385 - NO_TRANSLATION retained_intron ENSMUSG00000021832 Psmc6 ENSMUST00000228300 ENSMUSP00000153960 TRANSLATION nonsense_mediated_decay - - - 60.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021832 Psmc6 ENSMUST00000226431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021832 Psmc6 ENSMUST00000022380 ENSMUSP00000022380 TRANSLATION protein_coding - CCDS26974.1 1 389.0 12.0 11.25 24.7 148.4 0.0 -4,-5 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000021832 Psmc6 ENSMUST00000228479 ENSMUSP00000153924 TRANSLATION nonsense_mediated_decay start - - 45.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000021832 Psmc6 ENSMUST00000228831 - NO_TRANSLATION retained_intron ENSMUSG00000021832 Psmc6 ENSMUST00000227148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079267 Gm5930 ENSMUST00000178002 ENSMUSP00000136583 TRANSLATION protein_coding stop - 5 163.0 0.0 3.0 0.0 87.1 0.0 -4,-2 0.0344 - -2.0 MINOR ENSMUSG00000079267 Gm5930 ENSMUST00000111863 ENSMUSP00000107494 TRANSLATION protein_coding - - 5 264.0 0.0 3.132 0.0 87.1 0.0 -4,-2 0.7721 - 12.0 PRINCIPAL:1 ENSMUSG00000115232 Gm49378 ENSMUST00000156420 ENSMUSP00000154468 TRANSLATION nonsense_mediated_decay,RT start - 5 143.0 0.0 0.0 0.0 120.6 0.0 -3,-5 0.7191 - -2.0 PRINCIPAL:1 ENSMUSG00000050666 Vstm4 ENSMUST00000053175 ENSMUSP00000055178 TRANSLATION protein_coding - CCDS26923.1 1 319.0 0.0 0.0 2.0 27.2 0.0 1,-2 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000076905 Traj24 ENSMUST00000103717 ENSMUSP00000142923 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000015968 Cacna1d ENSMUST00000223573 - NO_TRANSLATION retained_intron ENSMUSG00000015968 Cacna1d ENSMUST00000224395 ENSMUSP00000152953 TRANSLATION nonsense_mediated_decay - - - 513.0 0.0 6.53875 0.0 234.3 3.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000015968 Cacna1d ENSMUST00000225353 - NO_TRANSLATION retained_intron ENSMUSG00000015968 Cacna1d ENSMUST00000238690 ENSMUSP00000158696 TRANSLATION protein_coding start/stop - - 284.0 0.0 6.95 0.0 162.5 9.0 -4,-6 0.0042 1 -2.0 MINOR ENSMUSG00000015968 Cacna1d ENSMUST00000224785 ENSMUSP00000153293 TRANSLATION protein_coding - - - 2159.0 0.0 28.19275 0.1 1331.4 23.0 -4,-7 0.8969 6 8.0 ALTERNATIVE:2 ENSMUSG00000015968 Cacna1d ENSMUST00000238524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015968 Cacna1d ENSMUST00000223803 ENSMUSP00000153586 TRANSLATION protein_coding - - - 2135.0 0.0 27.99275 0.1 1327.9 23.0 -4,-7 0.4536 6 7.598 ALTERNATIVE:2 ENSMUSG00000015968 Cacna1d ENSMUST00000112250 ENSMUSP00000107869 TRANSLATION protein_coding - CCDS36846.1 1 2166.0 0.0 27.79275 0.7 1330.5 25.0 -4,-7 0.9521 6 7.202 PRINCIPAL:4 ENSMUSG00000015968 Cacna1d ENSMUST00000112249 ENSMUSP00000107868 TRANSLATION protein_coding - - 1 2187.0 0.0 27.99275 0.0 1329.1 25.0 -4,-7 0.5379 6 7.598 ALTERNATIVE:2 ENSMUSG00000015968 Cacna1d ENSMUST00000238675 ENSMUSP00000158846 TRANSLATION protein_coding - - - 1647.0 0.0 27.99275 0.0 1103.8 25.0 -4,-7 0.4374 4 7.598 MINOR ENSMUSG00000015968 Cacna1d ENSMUST00000224198 ENSMUSP00000153250 TRANSLATION protein_coding - CCDS36847.1 - 2144.0 0.0 27.79275 0.1 1330.5 25.0 -4,-7 0.8543 6 7.202 ALTERNATIVE:2 ENSMUSG00000015968 Cacna1d ENSMUST00000238336 ENSMUSP00000158801 TRANSLATION protein_coding start/stop - - 72.0 0.0 0.37375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015968 Cacna1d ENSMUST00000238735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015968 Cacna1d ENSMUST00000224073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015968 Cacna1d ENSMUST00000238571 ENSMUSP00000158698 TRANSLATION protein_coding start/stop - - 223.0 0.0 5.5 0.0 127.7 8.0 -4,-7 0.0042 - -2.0 MINOR ENSMUSG00000015968 Cacna1d ENSMUST00000238568 ENSMUSP00000158773 TRANSLATION protein_coding start - - 1643.0 0.0 27.89275 0.0 1098.6 25.0 -4,-5 0.3006 4 -2.0 MINOR ENSMUSG00000015968 Cacna1d ENSMUST00000238504 ENSMUSP00000158632 TRANSLATION protein_coding - - - 2179.0 0.0 28.09275 0.1 1333.4 25.0 -4,-7 0.6903 6 7.802 ALTERNATIVE:2 ENSMUSG00000015968 Cacna1d ENSMUST00000225717 - NO_TRANSLATION retained_intron ENSMUSG00000015968 Cacna1d ENSMUST00000223985 - NO_TRANSLATION retained_intron ENSMUSG00000015968 Cacna1d ENSMUST00000224912 ENSMUSP00000153689 TRANSLATION nonsense_mediated_decay start - - 180.0 0.0 4.75 0.0 104.6 8.0 -3,-5 0.0042 1 -2.0 MINOR ENSMUSG00000003469 Phyhip ENSMUST00000159180 ENSMUSP00000125254 TRANSLATION protein_coding stop - 3 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.011 3 -2.0 MINOR ENSMUSG00000003469 Phyhip ENSMUST00000003561 ENSMUSP00000003561 TRANSLATION protein_coding - CCDS36971.1 1 330.0 0.0 0.0 30.7 0.0 0.0 -4,-5 1.0 11 4.0 PRINCIPAL:1 ENSMUSG00000035953 Pip4p1 ENSMUST00000160835 ENSMUSP00000124782 TRANSLATION protein_coding - CCDS27028.1 1 284.0 12.0 0.0 16.9 419.2 2.0 -4,-5 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000035953 Pip4p1 ENSMUST00000049312 ENSMUSP00000038276 TRANSLATION protein_coding - CCDS79324.1 1 277.0 12.0 0.0 14.5 419.2 2.0 -4,-5 0.9505 5 9.396 ALTERNATIVE:1 ENSMUSG00000035953 Pip4p1 ENSMUST00000159047 - NO_TRANSLATION retained_intron ENSMUSG00000035953 Pip4p1 ENSMUST00000161166 ENSMUSP00000125414 TRANSLATION protein_coding - CCDS79323.1 1 231.0 7.0 0.0 2.1 193.5 0.0 -4,-5 0.0349 2 2.94 MINOR ENSMUSG00000035953 Pip4p1 ENSMUST00000159745 - NO_TRANSLATION retained_intron ENSMUSG00000035953 Pip4p1 ENSMUST00000163088 - NO_TRANSLATION retained_intron ENSMUSG00000035953 Pip4p1 ENSMUST00000161669 ENSMUSP00000125281 TRANSLATION protein_coding start - 1 98.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035953 Pip4p1 ENSMUST00000162935 - NO_TRANSLATION retained_intron ENSMUSG00000035953 Pip4p1 ENSMUST00000163043 - NO_TRANSLATION retained_intron ENSMUSG00000035953 Pip4p1 ENSMUST00000160538 ENSMUSP00000124259 TRANSLATION protein_coding stop - 5 283.0 10.0 0.0 0.0 264.1 0.0 -4,-5 0.0393 3 -2.0 MINOR ENSMUSG00000035953 Pip4p1 ENSMUST00000162957 ENSMUSP00000123697 TRANSLATION protein_coding - CCDS79322.1 1 238.0 7.0 0.0 2.1 193.2 0.0 -4,-5 0.0349 2 2.94 MINOR ENSMUSG00000071531 Gprin2 ENSMUST00000226613 ENSMUSP00000154640 TRANSLATION protein_coding - CCDS49443.1 - 455.0 0.0 0.0 6.7 93.1 0.0 -4,-7 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000071531 Gprin2 ENSMUST00000226511 ENSMUSP00000154257 TRANSLATION protein_coding stop - - 132.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000071531 Gprin2 ENSMUST00000096019 ENSMUSP00000093718 TRANSLATION protein_coding stop - 2 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000076823 Trav13n-4 ENSMUST00000196105 ENSMUSP00000143372 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.0 0.0 47.9 0.0 4,-1 0.8259 - -2.0 PRINCIPAL:5 ENSMUSG00000076823 Trav13n-4 ENSMUST00000103634 ENSMUSP00000100411 TRANSLATION TR_V_gene start/stop - - 89.0 0.0 1.0 0.0 47.9 0.0 -4,-5 0.0621 - -2.0 ALTERNATIVE:2 ENSMUSG00000079269 Gm3676 ENSMUST00000249603 ENSMUSP00000159812 TRANSLATION protein_coding - - - 120.0 0.0 2.15 0.0 0.0 0.0 -4,-5 0.0 - 3.342 MINOR ENSMUSG00000079269 Gm3676 ENSMUST00000111869 ENSMUSP00000107500 TRANSLATION protein_coding - - 3 184.0 0.0 3.48 0.0 67.3 0.0 -4,-6 0.7335 - 12.0 PRINCIPAL:1 ENSMUSG00000046352 Gjb2 ENSMUST00000055698 ENSMUSP00000054343 TRANSLATION protein_coding - CCDS27153.1 1 226.0 0.0 1.0 16.5 290.4 0.0 -3,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000021890 Eaf1 ENSMUST00000228952 - NO_TRANSLATION retained_intron ENSMUSG00000021890 Eaf1 ENSMUST00000226564 - NO_TRANSLATION retained_intron ENSMUSG00000021890 Eaf1 ENSMUST00000227551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021890 Eaf1 ENSMUST00000022446 ENSMUSP00000022446 TRANSLATION protein_coding - CCDS26914.1 1 268.0 0.0 3.0 6.8 82.0 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000034731 Dgkh ENSMUST00000227767 ENSMUSP00000154031 TRANSLATION protein_coding - - - 1032.0 16.0 2.85 0.0 343.5 0.0 -4,-5 0.0234 17 5.504 MINOR ENSMUSG00000034731 Dgkh ENSMUST00000227820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034731 Dgkh ENSMUST00000226342 ENSMUSP00000154036 TRANSLATION protein_coding - - - 1180.0 22.0 4.148 2.4 395.2 0.0 -4,-5 0.5472 19 13.017 ALTERNATIVE:2 ENSMUSG00000034731 Dgkh ENSMUST00000228362 ENSMUSP00000154554 TRANSLATION protein_coding - - - 1078.0 16.0 4.798 3.2 407.7 0.0 -4,-5 0.826 18 10.813 MINOR ENSMUSG00000034731 Dgkh ENSMUST00000074729 ENSMUSP00000074290 TRANSLATION protein_coding - CCDS36986.1 5 1156.0 22.0 4.148 3.7 395.2 0.0 -2,-5 1.0 19 13.498 PRINCIPAL:2 ENSMUSG00000034731 Dgkh ENSMUST00000227537 ENSMUSP00000154107 TRANSLATION nonsense_mediated_decay - - - 443.0 17.0 3.048 0.0 168.2 0.0 -4,-1 0.0 7 -2.0 MINOR ENSMUSG00000022204 Ngdn ENSMUST00000226258 - NO_TRANSLATION retained_intron ENSMUSG00000022204 Ngdn ENSMUST00000022815 ENSMUSP00000022815 TRANSLATION protein_coding - CCDS36928.1 1 315.0 0.0 0.0 4.3 57.4 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000022204 Ngdn ENSMUST00000226658 - NO_TRANSLATION retained_intron ENSMUSG00000022204 Ngdn ENSMUST00000227833 - NO_TRANSLATION retained_intron ENSMUSG00000054763 Defb42 ENSMUST00000142140 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054763 Defb42 ENSMUST00000186438 ENSMUSP00000140494 TRANSLATION protein_coding start - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.016 - -2.0 MINOR ENSMUSG00000054763 Defb42 ENSMUST00000111203 ENSMUSP00000106834 TRANSLATION protein_coding - CCDS36948.1 3 75.0 0.0 1.75 1.0 0.0 0.0 2,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000054763 Defb42 ENSMUST00000067990 ENSMUSP00000070629 TRANSLATION protein_coding - CCDS36948.1 1 75.0 0.0 1.75 1.0 0.0 0.0 2,-2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000054763 Defb42 ENSMUST00000138708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095854 Trav14d-1 ENSMUST00000187138 ENSMUSP00000141168 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.1 0.0 66.6 0.0 -3,-5 0.0241 - -2.0 ALTERNATIVE:2 ENSMUSG00000095854 Trav14d-1 ENSMUST00000181038 ENSMUSP00000137691 TRANSLATION TR_V_gene stop - - 121.0 0.0 1.43 0.0 66.6 0.0 3,-1 0.8217 - -2.0 PRINCIPAL:5 ENSMUSG00000095686 Gm3099 ENSMUST00000112787 ENSMUSP00000108407 TRANSLATION protein_coding - - 1 205.0 0.0 3.0 0.0 82.6 0.0 -4,-5 0.738 - 12.0 PRINCIPAL:1 ENSMUSG00000023387 Kcnk16 ENSMUST00000024155 ENSMUSP00000024155 TRANSLATION protein_coding - CCDS49407.1 5 292.0 0.0 5.75 10.3 118.7 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000023387 Kcnk16 ENSMUST00000225596 ENSMUSP00000153256 TRANSLATION protein_coding - - - 162.0 0.0 3.0 0.0 54.1 3.0 -4,-6 0.0015 - 2.622 MINOR ENSMUSG00000058571 Gpc6 ENSMUST00000088483 ENSMUSP00000085835 TRANSLATION protein_coding - CCDS27330.1 5 555.0 0.0 5.09 13.6 831.4 0.0 3,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000058571 Gpc6 ENSMUST00000078849 ENSMUSP00000077893 TRANSLATION protein_coding - CCDS27330.1 1 555.0 0.0 5.09 13.6 831.4 0.0 3,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000058571 Gpc6 ENSMUST00000123239 - NO_TRANSLATION retained_intron ENSMUSG00000058571 Gpc6 ENSMUST00000125435 ENSMUSP00000120362 TRANSLATION protein_coding - CCDS37008.1 1 565.0 0.0 4.925 5.7 815.0 0.0 3,-2 0.6258 8 12.178 MINOR ENSMUSG00000048337 Npy4r ENSMUST00000052164 ENSMUSP00000056576 TRANSLATION protein_coding - CCDS26933.1 1 375.0 0.0 0.8 13.3 161.7 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000022136 Dnajc3 ENSMUST00000022734 ENSMUSP00000022734 TRANSLATION protein_coding - CCDS37012.1 1 504.0 0.0 10.35 28.1 152.2 0.0 0,-3 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000040472 Rabggta ENSMUST00000226209 - NO_TRANSLATION retained_intron ENSMUSG00000040472 Rabggta ENSMUST00000228604 - NO_TRANSLATION retained_intron ENSMUSG00000040472 Rabggta ENSMUST00000227617 - NO_TRANSLATION retained_intron ENSMUSG00000040472 Rabggta ENSMUST00000228826 - NO_TRANSLATION retained_intron ENSMUSG00000040472 Rabggta ENSMUST00000228899 - NO_TRANSLATION retained_intron ENSMUSG00000040472 Rabggta ENSMUST00000163889 ENSMUSP00000128668 TRANSLATION protein_coding - CCDS36933.1 1 567.0 5.0 13.75 15.2 278.6 0.0 -4,-5 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000040472 Rabggta ENSMUST00000227132 - NO_TRANSLATION retained_intron ENSMUSG00000040472 Rabggta ENSMUST00000227061 ENSMUSP00000154725 TRANSLATION protein_coding - CCDS36933.1 - 567.0 5.0 13.75 15.2 278.6 0.0 -4,-5 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000040472 Rabggta ENSMUST00000169237 ENSMUSP00000133032 TRANSLATION protein_coding - CCDS36933.1 1 567.0 5.0 13.75 15.2 278.6 0.0 -4,-5 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000040472 Rabggta ENSMUST00000062861 ENSMUSP00000061498 TRANSLATION protein_coding - - 1 297.0 0.0 8.25 0.0 107.7 0.0 -4,-7 0.0 12 0.0 MINOR ENSMUSG00000105629 Trav7n-5 ENSMUST00000199753 ENSMUSP00000143681 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.4 0.0 60.4 0.0 3,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000093953 Trav3d-3 ENSMUST00000103599 ENSMUSP00000100376 TRANSLATION TR_V_gene start/stop - - 92.0 0.0 1.0 0.0 56.9 0.0 -4,-5 0.0225 - -2.0 ALTERNATIVE:2 ENSMUSG00000093953 Trav3d-3 ENSMUST00000196023 ENSMUSP00000143158 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.25 0.0 56.9 0.0 0,-3 0.8177 - -2.0 PRINCIPAL:5 ENSMUSG00000021770 Samd8 ENSMUST00000022292 ENSMUSP00000022292 TRANSLATION protein_coding - CCDS26866.1 1 478.0 0.0 3.44 7.0 128.5 6.0 -4,0 0.7587 - 13.656 MINOR ENSMUSG00000021770 Samd8 ENSMUST00000144061 ENSMUSP00000117603 TRANSLATION nonsense_mediated_decay - - 1 64.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000021770 Samd8 ENSMUST00000142023 - NO_TRANSLATION retained_intron ENSMUSG00000021770 Samd8 ENSMUST00000119430 ENSMUSP00000112803 TRANSLATION protein_coding - - 1 415.0 0.0 3.44 15.5 128.5 6.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037536 Fbxo34 ENSMUST00000227601 ENSMUSP00000154798 TRANSLATION nonsense_mediated_decay start - - 44.0 0.0 0.0 0.0 0.0 0.0 -2,0 0.0019 - -2.0 MINOR ENSMUSG00000037536 Fbxo34 ENSMUST00000228668 ENSMUSP00000154110 TRANSLATION protein_coding stop - - 108.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000037536 Fbxo34 ENSMUST00000228740 ENSMUSP00000154437 TRANSLATION protein_coding stop - - 28.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000037536 Fbxo34 ENSMUST00000226954 ENSMUSP00000154472 TRANSLATION nonsense_mediated_decay start - - 51.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0005 - -2.0 MINOR ENSMUSG00000037536 Fbxo34 ENSMUST00000095941 ENSMUSP00000093634 TRANSLATION protein_coding - CCDS49471.1 1 695.0 4.0 0.0 0.0 19.8 0.0 -4,-7 0.2619 - 6.0 ALTERNATIVE:2 ENSMUSG00000037536 Fbxo34 ENSMUST00000228634 - NO_TRANSLATION retained_intron ENSMUSG00000037536 Fbxo34 ENSMUST00000227162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037536 Fbxo34 ENSMUST00000226432 ENSMUSP00000154565 TRANSLATION protein_coding stop - - 93.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000037536 Fbxo34 ENSMUST00000043112 ENSMUSP00000044675 TRANSLATION protein_coding - CCDS26988.1 1 746.0 4.0 0.0 0.0 19.8 0.0 -2,2 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000037536 Fbxo34 ENSMUST00000168833 ENSMUSP00000132271 TRANSLATION protein_coding - CCDS49471.1 1 695.0 4.0 0.0 0.0 19.8 0.0 -4,-7 0.2619 - 6.0 ALTERNATIVE:2 ENSMUSG00000037536 Fbxo34 ENSMUST00000228019 ENSMUSP00000153736 TRANSLATION nonsense_mediated_decay start - - 45.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0011 - -2.0 MINOR ENSMUSG00000037536 Fbxo34 ENSMUST00000226395 ENSMUSP00000154340 TRANSLATION protein_coding stop - - 88.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037536 Fbxo34 ENSMUST00000163324 ENSMUSP00000131708 TRANSLATION protein_coding - CCDS49471.1 2 695.0 4.0 0.0 0.0 19.8 0.0 -4,-7 0.2619 - 6.0 ALTERNATIVE:2 ENSMUSG00000037536 Fbxo34 ENSMUST00000165714 ENSMUSP00000130036 TRANSLATION protein_coding - CCDS49471.1 1 695.0 4.0 0.0 0.0 19.8 0.0 -4,-7 0.2619 - 6.0 ALTERNATIVE:2 ENSMUSG00000093966 Trav4-3 ENSMUST00000103655 ENSMUSP00000100432 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.3 0.0 46.0 0.0 2,-2 0.8207 - -2.0 PRINCIPAL:1 ENSMUSG00000095195 Gm3005 ENSMUST00000249383 ENSMUSP00000159741 TRANSLATION protein_coding - - - 205.0 0.0 3.0 0.0 74.5 0.0 -4,-5 0.0141 - 8.0 ALTERNATIVE:2 ENSMUSG00000095195 Gm3005 ENSMUST00000178728 ENSMUSP00000136856 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 74.5 0.0 -4,-5 0.0141 - 8.0 ALTERNATIVE:2 ENSMUSG00000095195 Gm3005 ENSMUST00000249384 ENSMUSP00000159742 TRANSLATION protein_coding - - - 150.0 0.0 3.0 0.0 68.5 0.0 -4,-5 0.0265 - 7.0 ALTERNATIVE:2 ENSMUSG00000095195 Gm3005 ENSMUST00000249381 ENSMUSP00000159739 TRANSLATION protein_coding - - - 221.0 0.0 3.0 0.0 74.5 0.0 -4,-5 0.7384 - 8.0 PRINCIPAL:2 ENSMUSG00000095195 Gm3005 ENSMUST00000249382 ENSMUSP00000159740 TRANSLATION protein_coding - - - 205.0 0.0 3.0 0.0 74.5 0.0 -4,-5 0.0141 - 8.0 ALTERNATIVE:2 ENSMUSG00000071350 Setdb2 ENSMUST00000160904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071350 Setdb2 ENSMUST00000095775 ENSMUSP00000093450 TRANSLATION protein_coding - - 5 713.0 31.0 5.266 0.0 160.6 0.0 -4,-5 0.1922 6 14.0 ALTERNATIVE:2 ENSMUSG00000071350 Setdb2 ENSMUST00000111253 ENSMUSP00000106884 TRANSLATION protein_coding - - 2 140.0 0.0 2.08 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000071350 Setdb2 ENSMUST00000161459 ENSMUSP00000124696 TRANSLATION protein_coding - CCDS84142.1 1 697.0 31.0 5.266 0.0 160.6 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:2 ENSMUSG00000071350 Setdb2 ENSMUST00000159640 - NO_TRANSLATION retained_intron ENSMUSG00000076897 Traj32 ENSMUST00000103709 ENSMUSP00000143024 TRANSLATION TR_J_gene start/stop - - 22.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000022223 Sdr39u1 ENSMUST00000228151 - NO_TRANSLATION retained_intron ENSMUSG00000022223 Sdr39u1 ENSMUST00000227268 - NO_TRANSLATION retained_intron ENSMUSG00000022223 Sdr39u1 ENSMUST00000228209 - NO_TRANSLATION retained_intron ENSMUSG00000022223 Sdr39u1 ENSMUST00000227139 - NO_TRANSLATION retained_intron ENSMUSG00000022223 Sdr39u1 ENSMUST00000226746 - NO_TRANSLATION retained_intron ENSMUSG00000022223 Sdr39u1 ENSMUST00000227712 - NO_TRANSLATION retained_intron ENSMUSG00000022223 Sdr39u1 ENSMUST00000227163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022223 Sdr39u1 ENSMUST00000226427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022223 Sdr39u1 ENSMUST00000111325 ENSMUSP00000106957 TRANSLATION protein_coding - CCDS36935.1 1 293.0 30.0 7.16 16.7 86.5 0.0 -4,-1 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000022223 Sdr39u1 ENSMUST00000227032 ENSMUSP00000154624 TRANSLATION nonsense_mediated_decay - - - 147.0 24.0 3.99 0.0 22.5 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000022223 Sdr39u1 ENSMUST00000226338 - NO_TRANSLATION retained_intron ENSMUSG00000022223 Sdr39u1 ENSMUST00000227211 ENSMUSP00000153845 TRANSLATION protein_coding start - - 137.0 20.0 4.146 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000022223 Sdr39u1 ENSMUST00000227965 - NO_TRANSLATION retained_intron ENSMUSG00000022223 Sdr39u1 ENSMUST00000226273 ENSMUSP00000154028 TRANSLATION nonsense_mediated_decay - - - 64.0 11.0 1.68 0.0 22.5 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000022223 Sdr39u1 ENSMUST00000227387 ENSMUSP00000154325 TRANSLATION protein_coding start/stop - - 139.0 22.0 4.5 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000022223 Sdr39u1 ENSMUST00000227677 - NO_TRANSLATION retained_intron ENSMUSG00000022223 Sdr39u1 ENSMUST00000227499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096106 Trav5d-4 ENSMUST00000179701 ENSMUSP00000136664 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.3 0.0 63.5 0.0 1,-3 0.8262 - -2.0 PRINCIPAL:1 ENSMUSG00000013701 Timm23 ENSMUST00000168813 - NO_TRANSLATION retained_intron ENSMUSG00000013701 Timm23 ENSMUST00000172052 - NO_TRANSLATION retained_intron ENSMUSG00000013701 Timm23 ENSMUST00000163379 ENSMUSP00000129688 TRANSLATION nonsense_mediated_decay - - 3 61.0 0.0 0.36 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000013701 Timm23 ENSMUST00000170331 ENSMUSP00000126977 TRANSLATION protein_coding - - 3 78.0 0.0 0.36 0.0 0.0 0.0 -4,-6 0.0 - 0.888 MINOR ENSMUSG00000013701 Timm23 ENSMUST00000168139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013701 Timm23 ENSMUST00000226683 ENSMUSP00000154804 TRANSLATION protein_coding - - - 197.0 0.0 2.165 0.0 53.1 0.0 -4,-6 0.0011 3 10.176 MINOR ENSMUSG00000013701 Timm23 ENSMUST00000170233 - NO_TRANSLATION retained_intron ENSMUSG00000013701 Timm23 ENSMUST00000013845 ENSMUSP00000013845 TRANSLATION protein_coding - CCDS36864.1 1 209.0 0.0 2.429 15.3 66.0 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000040055 Gjb6 ENSMUST00000224544 - NO_TRANSLATION retained_intron ENSMUSG00000040055 Gjb6 ENSMUST00000160703 ENSMUSP00000124927 TRANSLATION protein_coding stop - 3 173.0 0.0 1.0 0.0 204.2 3.0 -3,-7 0.0022 1 -2.0 MINOR ENSMUSG00000040055 Gjb6 ENSMUST00000039380 ENSMUSP00000035630 TRANSLATION protein_coding - CCDS27154.1 1 261.0 0.0 1.8 22.7 278.4 4.0 -3,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040055 Gjb6 ENSMUST00000162931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076891 Traj39 ENSMUST00000103703 ENSMUSP00000142544 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000052584 Serp2 ENSMUST00000227076 ENSMUSP00000154122 TRANSLATION nonsense_mediated_decay - - - 53.0 0.0 0.75 0.0 86.6 0.0 -4,-2 0.0048 - -2.0 MINOR ENSMUSG00000052584 Serp2 ENSMUST00000227957 - NO_TRANSLATION retained_intron ENSMUSG00000052584 Serp2 ENSMUST00000228055 ENSMUSP00000154499 TRANSLATION protein_coding - - - 36.0 0.0 0.0 0.0 34.0 0.0 -4,-2 0.0 - 1.68 MINOR ENSMUSG00000052584 Serp2 ENSMUST00000228524 ENSMUSP00000154586 TRANSLATION protein_coding stop - - 53.0 0.0 0.0 0.0 32.1 0.0 -4,-2 0.0004 - -2.0 MINOR ENSMUSG00000052584 Serp2 ENSMUST00000064517 ENSMUSP00000068508 TRANSLATION protein_coding - CCDS49546.1 1 65.0 0.0 1.08 33.0 106.0 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000072676 Tmem254 ENSMUST00000184129 - NO_TRANSLATION retained_intron ENSMUSG00000072676 Tmem254 ENSMUST00000100813 ENSMUSP00000098376 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 1.75 0.0 40.7 1.0 -1,-6 0.0015 1 -2.0 MINOR ENSMUSG00000072676 Tmem254 ENSMUST00000100811 ENSMUSP00000098374 TRANSLATION protein_coding - CCDS26876.1 1 129.0 0.0 3.15 5.5 123.4 2.0 -4,-7 0.369 1 12.438 MINOR ENSMUSG00000072676 Tmem254 ENSMUST00000185006 ENSMUSP00000139270 TRANSLATION protein_coding - CCDS49420.1 1 123.0 0.0 3.5 16.8 123.1 2.0 -1,-5 1.0 1 15.982 PRINCIPAL:1 ENSMUSG00000040314 Ctsg ENSMUST00000015583 ENSMUSP00000015583 TRANSLATION protein_coding - CCDS27142.1 1 261.0 6.0 4.0 0.0 221.7 0.0 3,-2 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000040314 Ctsg ENSMUST00000225312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021810 Ecd ENSMUST00000223955 ENSMUSP00000153021 TRANSLATION nonsense_mediated_decay - - - 78.0 0.0 0.0 0.0 53.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021810 Ecd ENSMUST00000225487 - NO_TRANSLATION retained_intron ENSMUSG00000021810 Ecd ENSMUST00000224412 ENSMUSP00000153408 TRANSLATION protein_coding stop - - 33.0 0.0 0.0 0.0 58.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021810 Ecd ENSMUST00000022344 ENSMUSP00000022344 TRANSLATION protein_coding - CCDS26842.1 1 641.0 0.0 0.0 1.1 796.5 0.0 -4,-5 1.0 8 7.0 PRINCIPAL:1 ENSMUSG00000115338 Pnp ENSMUST00000226871 ENSMUSP00000154805 TRANSLATION protein_coding stop - - 136.0 8.0 3.0 0.0 67.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000115338 Pnp ENSMUST00000228712 - NO_TRANSLATION retained_intron ENSMUSG00000115338 Pnp ENSMUST00000048615 ENSMUSP00000043926 TRANSLATION protein_coding - CCDS27029.1 1 289.0 12.0 5.5 9.2 180.1 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000115338 Pnp ENSMUST00000228631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071229 Timm8a2 ENSMUST00000045976 ENSMUSP00000047497 TRANSLATION protein_coding - CCDS37020.1 1 97.0 0.0 1.0 9.4 77.4 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000041078 Grid1 ENSMUST00000043349 ENSMUSP00000044009 TRANSLATION protein_coding - CCDS26944.1 1 1009.0 12.0 12.675 26.6 475.4 0.0 1,-2 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000041078 Grid1 ENSMUST00000227253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041078 Grid1 ENSMUST00000173307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046908 Ltb4r1 ENSMUST00000057569 ENSMUSP00000051368 TRANSLATION protein_coding - CCDS27129.1 1 351.0 0.0 0.8 5.5 145.7 0.0 0,-3 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000037526 Atg14 ENSMUST00000042988 ENSMUSP00000039047 TRANSLATION protein_coding - CCDS26989.1 1 492.0 4.0 0.0 16.7 257.1 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000037526 Atg14 ENSMUST00000226299 ENSMUSP00000153718 TRANSLATION protein_coding - CCDS26989.1 - 492.0 4.0 0.0 16.7 257.1 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000037526 Atg14 ENSMUST00000228784 ENSMUSP00000154124 TRANSLATION protein_coding start - - 125.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0008 3 -2.0 MINOR ENSMUSG00000037526 Atg14 ENSMUST00000227971 - NO_TRANSLATION retained_intron ENSMUSG00000095318 Gm8024 ENSMUST00000249545 ENSMUSP00000159786 TRANSLATION nonsense_mediated_decay - - - 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095318 Gm8024 ENSMUST00000249544 ENSMUSP00000159785 TRANSLATION protein_coding - - - 178.0 0.0 4.08 0.0 91.3 0.0 -4,-5 0.7406 - 12.0 PRINCIPAL:1 ENSMUSG00000095318 Gm8024 ENSMUST00000249546 ENSMUSP00000159787 TRANSLATION protein_coding - - - 178.0 0.0 4.08 0.0 91.3 0.0 -4,-5 0.7406 - 12.0 PRINCIPAL:1 ENSMUSG00000095318 Gm8024 ENSMUST00000249547 ENSMUSP00000159788 TRANSLATION protein_coding - - - 100.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - 1.842 MINOR ENSMUSG00000095318 Gm8024 ENSMUST00000249548 ENSMUSP00000159789 TRANSLATION nonsense_mediated_decay - - - 77.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000076882 Traj49 ENSMUST00000199452 ENSMUSP00000142947 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000076882 Traj49 ENSMUST00000103694 - NO_TRANSLATION processed_transcript ENSMUSG00000022040 Ephx2 ENSMUST00000225309 ENSMUSP00000152894 TRANSLATION protein_coding - - - 488.0 6.0 13.16 2.2 125.7 0.0 -4,-6 0.0612 18 11.25 MINOR ENSMUSG00000022040 Ephx2 ENSMUST00000224698 ENSMUSP00000153161 TRANSLATION protein_coding - - - 536.0 6.0 13.36 0.0 125.7 0.0 0,-3 0.0226 18 11.208 MINOR ENSMUSG00000022040 Ephx2 ENSMUST00000070515 ENSMUSP00000069209 TRANSLATION protein_coding - CCDS27218.1 1 554.0 9.0 14.91 9.2 153.9 0.0 -4,-7 1.0 24 21.0 PRINCIPAL:1 ENSMUSG00000021893 Capn7 ENSMUST00000143472 ENSMUSP00000118596 TRANSLATION nonsense_mediated_decay - - 5 508.0 0.0 2.185 0.0 207.4 0.0 -4,-5 0.0009 7 -2.0 MINOR ENSMUSG00000021893 Capn7 ENSMUST00000152182 ENSMUSP00000119214 TRANSLATION nonsense_mediated_decay - - 1 508.0 0.0 2.185 0.0 207.4 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000021893 Capn7 ENSMUST00000022451 ENSMUSP00000022451 TRANSLATION protein_coding - CCDS26911.1 1 813.0 0.0 5.955 28.0 284.1 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000021893 Capn7 ENSMUST00000228237 - NO_TRANSLATION retained_intron ENSMUSG00000096629 Gm3383 ENSMUST00000112758 ENSMUSP00000108378 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 75.5 0.0 -4,-5 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000022014 Epsti1 ENSMUST00000227903 ENSMUSP00000154502 TRANSLATION protein_coding - - - 229.0 0.0 4.75 0.0 0.0 0.0 -4,-2 0.0599 5 6.0 ALTERNATIVE:2 ENSMUSG00000022014 Epsti1 ENSMUST00000022591 ENSMUSP00000022591 TRANSLATION protein_coding - CCDS56971.1 1 314.0 0.0 4.75 2.5 0.0 0.0 -4,-2 1.0 7 7.0 PRINCIPAL:2 ENSMUSG00000096024 Gm17174 ENSMUST00000178962 ENSMUSP00000137954 TRANSLATION protein_coding - - 5 211.0 0.0 3.0 0.0 87.5 0.0 -4,-1 0.762 - 12.0 PRINCIPAL:1 ENSMUSG00000079357 Gm11100 ENSMUST00000238865 ENSMUSP00000159145 TRANSLATION protein_coding stop - - 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0189 - -2.0 MINOR ENSMUSG00000079357 Gm11100 ENSMUST00000112652 ENSMUSP00000159083 TRANSLATION protein_coding - - 5 295.0 0.0 1.3 5.6 0.0 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000079357 Gm11100 ENSMUST00000159275 ENSMUSP00000158967 TRANSLATION protein_coding - - 1 84.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0542 - 6.0 MINOR ENSMUSG00000021892 Sh3bp5 ENSMUST00000091903 ENSMUSP00000089517 TRANSLATION protein_coding - CCDS36855.1 1 458.0 0.0 5.25 8.5 309.2 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000021892 Sh3bp5 ENSMUST00000100730 ENSMUSP00000098296 TRANSLATION protein_coding - CCDS84108.1 1 456.0 0.0 4.5 0.0 253.8 0.0 -2,0 0.0974 4 7.176 MINOR ENSMUSG00000021892 Sh3bp5 ENSMUST00000140002 ENSMUSP00000117152 TRANSLATION nonsense_mediated_decay - - 1 463.0 0.0 5.25 0.0 309.2 0.0 -4,-5 0.1058 6 -2.0 MINOR ENSMUSG00000021892 Sh3bp5 ENSMUST00000147586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094151 Gm7233 ENSMUST00000249598 ENSMUSP00000159808 TRANSLATION protein_coding - - - 163.0 0.0 3.2 0.0 85.7 0.0 -4,-7 0.7396 - 12.0 PRINCIPAL:1 ENSMUSG00000094151 Gm7233 ENSMUST00000249597 ENSMUSP00000159807 TRANSLATION protein_coding - - - 163.0 0.0 3.2 0.0 85.7 0.0 -4,-7 0.7396 - 12.0 PRINCIPAL:1 ENSMUSG00000094151 Gm7233 ENSMUST00000249600 ENSMUSP00000159809 TRANSLATION protein_coding - - - 139.0 0.0 3.0 0.0 69.6 0.0 -4,-5 0.0034 - 10.47 MINOR ENSMUSG00000094151 Gm7233 ENSMUST00000249599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094151 Gm7233 ENSMUST00000168619 ENSMUSP00000130326 TRANSLATION protein_coding - - 5 163.0 0.0 3.2 0.0 85.7 0.0 -4,-7 0.7396 - 12.0 PRINCIPAL:1 ENSMUSG00000058188 Or11h7 ENSMUST00000080616 ENSMUSP00000079451 TRANSLATION protein_coding - CCDS27021.1 - 314.0 0.0 1.0 10.4 173.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058188 Or11h7 ENSMUST00000218546 ENSMUSP00000151399 TRANSLATION protein_coding - CCDS27021.1 5 314.0 0.0 1.0 10.4 173.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000023110 Prmt5 ENSMUST00000132801 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023110 Prmt5 ENSMUST00000147214 ENSMUSP00000154584 TRANSLATION nonsense_mediated_decay - - 3 37.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000023110 Prmt5 ENSMUST00000139964 ENSMUSP00000121502 TRANSLATION protein_coding start/stop - 3 203.0 8.0 5.0 0.0 155.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000023110 Prmt5 ENSMUST00000138367 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023110 Prmt5 ENSMUST00000132227 ENSMUSP00000138549 TRANSLATION nonsense_mediated_decay - - 5 63.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000023110 Prmt5 ENSMUST00000133552 - NO_TRANSLATION retained_intron ENSMUSG00000023110 Prmt5 ENSMUST00000023873 ENSMUSP00000023873 TRANSLATION protein_coding - CCDS27091.1 1 637.0 15.0 16.33 6.0 242.7 0.0 -4,-7 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000021972 Hmbox1 ENSMUST00000176657 - NO_TRANSLATION retained_intron ENSMUSG00000021972 Hmbox1 ENSMUST00000022544 ENSMUSP00000022544 TRANSLATION protein_coding - CCDS84149.1 1 404.0 0.0 3.625 0.1 254.8 0.0 -4,-7 0.2625 5 6.0 MINOR ENSMUSG00000021972 Hmbox1 ENSMUST00000176386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021972 Hmbox1 ENSMUST00000175905 ENSMUSP00000135657 TRANSLATION protein_coding - - 5 416.0 0.0 3.625 0.0 254.8 0.0 -4,-7 0.1275 5 6.0 MINOR ENSMUSG00000021972 Hmbox1 ENSMUST00000176489 ENSMUSP00000134824 TRANSLATION protein_coding stop - 5 364.0 0.0 2.625 0.0 240.6 0.0 -4,-7 0.0033 4 -2.0 MINOR ENSMUSG00000021972 Hmbox1 ENSMUST00000175744 ENSMUSP00000135272 TRANSLATION protein_coding - - 1 405.0 0.0 3.625 9.4 254.8 0.0 -4,-7 0.7392 5 8.8 MINOR ENSMUSG00000021972 Hmbox1 ENSMUST00000176128 ENSMUSP00000135448 TRANSLATION protein_coding - CCDS84150.1 5 420.0 0.0 3.625 13.0 254.8 0.0 -4,-7 0.9953 5 10.0 ALTERNATIVE:1 ENSMUSG00000021972 Hmbox1 ENSMUST00000176832 ENSMUSP00000135211 TRANSLATION protein_coding - - 5 408.0 0.0 3.625 0.0 254.8 0.0 -4,-7 0.068 5 6.0 MINOR ENSMUSG00000021972 Hmbox1 ENSMUST00000067843 ENSMUSP00000066905 TRANSLATION protein_coding - CCDS36955.1 1 419.0 0.0 3.625 13.0 254.8 0.0 -4,-7 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000021972 Hmbox1 ENSMUST00000177326 ENSMUSP00000135372 TRANSLATION protein_coding start - 5 445.0 0.0 3.625 11.8 254.8 0.0 -3,-6 0.7831 5 -2.0 MINOR ENSMUSG00000096793 Gm3002 ENSMUST00000249380 ENSMUSP00000159738 TRANSLATION protein_coding - - - 150.0 0.0 3.0 0.0 69.5 0.0 -4,-5 0.0292 - 7.0 ALTERNATIVE:2 ENSMUSG00000096793 Gm3002 ENSMUST00000249379 ENSMUSP00000159737 TRANSLATION protein_coding - - - 280.0 0.0 3.0 0.0 75.4 0.0 -4,-1 0.7667 - 8.0 PRINCIPAL:2 ENSMUSG00000096793 Gm3002 ENSMUST00000170480 ENSMUSP00000126836 TRANSLATION protein_coding - - 5 216.0 0.0 3.0 0.0 75.4 0.0 -4,-7 0.0207 - 8.0 ALTERNATIVE:2 ENSMUSG00000096793 Gm3002 ENSMUST00000249378 ENSMUSP00000159736 TRANSLATION nonsense_mediated_decay - - - 62.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000021903 Galnt15 ENSMUST00000164208 ENSMUSP00000131978 TRANSLATION protein_coding - - 1 514.0 1.0 4.5 0.0 74.9 0.0 -1,-5 0.0 - 2.997 MINOR ENSMUSG00000021903 Galnt15 ENSMUST00000022460 ENSMUSP00000022460 TRANSLATION protein_coding - CCDS36859.1 1 638.0 3.0 6.5 7.7 179.0 0.0 -1,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000060012 Kif13b ENSMUST00000100473 ENSMUSP00000098041 TRANSLATION protein_coding - CCDS36954.1 5 1843.0 11.0 15.86 0.3 740.7 0.0 -4,-7 0.995 36 14.0 ALTERNATIVE:2 ENSMUSG00000060012 Kif13b ENSMUST00000224503 ENSMUSP00000153168 TRANSLATION protein_coding - - - 1847.0 11.0 15.86 0.3 740.7 0.0 -4,-7 1.0 37 14.0 PRINCIPAL:3 ENSMUSG00000060012 Kif13b ENSMUST00000224126 ENSMUSP00000153252 TRANSLATION protein_coding stop - - 151.0 7.0 3.83 0.0 169.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000060012 Kif13b ENSMUST00000224677 - NO_TRANSLATION retained_intron ENSMUSG00000060012 Kif13b ENSMUST00000231130 - NO_TRANSLATION retained_intron ENSMUSG00000060012 Kif13b ENSMUST00000224507 - NO_TRANSLATION retained_intron ENSMUSG00000034205 Loxl2 ENSMUST00000100420 ENSMUSP00000097987 TRANSLATION protein_coding - CCDS27241.1 1 776.0 0.0 9.8 9.8 659.2 0.0 4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000034205 Loxl2 ENSMUST00000022660 ENSMUSP00000022660 TRANSLATION protein_coding - CCDS27241.1 1 776.0 0.0 9.8 9.8 659.2 0.0 4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000034235 Usp54 ENSMUST00000143267 - NO_TRANSLATION retained_intron ENSMUSG00000034235 Usp54 ENSMUST00000035340 ENSMUSP00000036214 TRANSLATION protein_coding - CCDS26847.2 5 1588.0 4.0 9.1 1.3 75.9 0.0 -4,0 1.0 16 17.0 PRINCIPAL:1 ENSMUSG00000034235 Usp54 ENSMUST00000022356 ENSMUSP00000022356 TRANSLATION protein_coding - CCDS26847.2 5 1588.0 4.0 9.1 1.3 75.9 0.0 -4,0 1.0 16 17.0 PRINCIPAL:1 ENSMUSG00000034235 Usp54 ENSMUST00000127342 - NO_TRANSLATION retained_intron ENSMUSG00000034235 Usp54 ENSMUST00000123287 ENSMUSP00000117503 TRANSLATION protein_coding start/stop - 3 222.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000091142 Gm17175 ENSMUST00000172117 ENSMUSP00000127078 TRANSLATION protein_coding - - 5 179.0 0.0 3.0 0.0 86.4 0.0 -4,-5 0.7375 - 12.0 PRINCIPAL:1 ENSMUSG00000095493 A630023A22Rik ENSMUST00000178958 ENSMUSP00000137109 TRANSLATION protein_coding - CCDS56947.1 1 199.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8767 - 0.0 PRINCIPAL:1 ENSMUSG00000095493 A630023A22Rik ENSMUST00000215823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075592 Nynrin ENSMUST00000227465 ENSMUSP00000154673 TRANSLATION protein_coding stop - - 128.0 0.0 0.96 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000075592 Nynrin ENSMUST00000168479 ENSMUSP00000129557 TRANSLATION protein_coding - CCDS49501.1 5 1840.0 4.0 3.9 0.0 175.3 0.0 -4,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000076839 Trav13-1 ENSMUST00000103651 ENSMUSP00000100428 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.0 0.0 53.7 0.0 3,-1 0.8257 - -2.0 PRINCIPAL:1 ENSMUSG00000090799 Klhl33 ENSMUST00000226765 - NO_TRANSLATION retained_intron ENSMUSG00000090799 Klhl33 ENSMUST00000164415 ENSMUSP00000129810 TRANSLATION protein_coding - CCDS56952.1 5 533.0 0.0 3.0 2.4 185.2 0.0 -4,-2 0.5147 1 6.268 MINOR ENSMUSG00000090799 Klhl33 ENSMUST00000227271 ENSMUSP00000154785 TRANSLATION protein_coding - - - 793.0 0.0 4.2 0.1 257.4 0.0 -4,-5 0.8585 2 12.0 PRINCIPAL:1 ENSMUSG00000090799 Klhl33 ENSMUST00000170855 ENSMUSP00000131456 TRANSLATION protein_coding - - 1 218.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000061356 Nuggc ENSMUST00000150897 ENSMUSP00000118402 TRANSLATION protein_coding - - 5 796.0 9.0 0.0 5.5 50.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061356 Nuggc ENSMUST00000079469 ENSMUSP00000078434 TRANSLATION protein_coding - CCDS56966.1 5 812.0 9.0 0.0 0.0 50.6 0.0 -4,-5 0.2894 - 12.0 MINOR ENSMUSG00000022054 Nefm ENSMUST00000111089 ENSMUSP00000106718 TRANSLATION protein_coding - - 1 470.0 0.0 1.066 0.0 399.8 0.0 -4,-2 0.0582 21 7.2 ALTERNATIVE:2 ENSMUSG00000022054 Nefm ENSMUST00000022638 ENSMUSP00000022638 TRANSLATION protein_coding - CCDS27233.1 1 848.0 0.0 1.066 0.0 415.8 0.0 -4,-2 1.0 34 8.0 PRINCIPAL:2 ENSMUSG00000095797 Gm8246 ENSMUST00000180788 ENSMUSP00000138067 TRANSLATION protein_coding - - 5 263.0 0.0 4.0 0.0 72.3 0.0 -4,-5 0.7338 - 12.0 PRINCIPAL:1 ENSMUSG00000095797 Gm8246 ENSMUST00000249585 ENSMUSP00000159799 TRANSLATION protein_coding - - - 160.0 0.0 2.0 0.1 39.7 0.0 -4,-5 0.0 - 5.292 MINOR ENSMUSG00000045731 Pnoc ENSMUST00000059339 ENSMUSP00000054210 TRANSLATION protein_coding - CCDS27213.1 1 187.0 0.0 0.0 0.1 63.4 0.0 4,-1 1.0 3 2.0 PRINCIPAL:2 ENSMUSG00000045731 Pnoc ENSMUST00000224594 ENSMUSP00000153589 TRANSLATION protein_coding - - - 212.0 0.0 0.0 0.1 63.4 0.0 4,-1 0.1176 3 2.0 ALTERNATIVE:2 ENSMUSG00000022229 Atp12a ENSMUST00000007340 ENSMUSP00000007340 TRANSLATION protein_coding - CCDS27148.1 1 1035.0 3.0 19.68 8.5 455.0 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000022229 Atp12a ENSMUST00000225698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094590 Gm3629 ENSMUST00000181786 ENSMUSP00000137842 TRANSLATION protein_coding - - 1 127.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000096055 Trav12n-1 ENSMUST00000198682 ENSMUSP00000143191 TRANSLATION TR_V_gene stop - - 115.0 0.0 1.1 0.0 49.3 0.0 4,-1 0.8234 - -2.0 PRINCIPAL:1 ENSMUSG00000095368 Gm3012 ENSMUST00000112802 ENSMUSP00000108421 TRANSLATION protein_coding start - 1 225.0 0.0 3.0 0.0 76.2 0.0 -1,-4 0.7649 - -2.0 PRINCIPAL:1 ENSMUSG00000068437 Or4k15b ENSMUST00000089844 ENSMUSP00000087282 TRANSLATION protein_coding - CCDS36904.1 - 321.0 0.0 1.0 9.2 155.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068437 Or4k15b ENSMUST00000206920 ENSMUSP00000145828 TRANSLATION protein_coding - CCDS36904.1 2 321.0 0.0 1.0 9.2 155.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000072145 BC061237 ENSMUST00000096899 ENSMUSP00000094662 TRANSLATION protein_coding - CCDS49462.1 1 184.0 0.0 3.15 0.0 80.3 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072145 BC061237 ENSMUST00000227102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095056 Gm3159 ENSMUST00000164038 ENSMUSP00000126043 TRANSLATION protein_coding - - 5 204.0 0.0 3.0 0.0 69.0 0.0 -4,-5 0.0024 - 10.002 MINOR ENSMUSG00000095056 Gm3159 ENSMUST00000167245 ENSMUSP00000133201 TRANSLATION protein_coding - - 5 267.0 0.0 4.0 0.0 69.0 0.0 -4,-5 0.7383 - 12.0 PRINCIPAL:1 ENSMUSG00000106620 Trav7-5 ENSMUST00000200609 ENSMUSP00000143345 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.4 0.0 66.9 0.0 3,-2 0.8201 - -2.0 PRINCIPAL:1 ENSMUSG00000079271 1700049E17Rik1 ENSMUST00000095985 ENSMUSP00000093683 TRANSLATION protein_coding - - 2 198.0 0.0 3.0 0.0 85.0 0.0 -4,-2 0.7585 - 12.0 PRINCIPAL:1 ENSMUSG00000039308 Ndst2 ENSMUST00000224829 ENSMUSP00000153393 TRANSLATION protein_coding start - - 198.0 4.0 2.55 0.0 90.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039308 Ndst2 ENSMUST00000047490 ENSMUSP00000040227 TRANSLATION protein_coding - CCDS26854.1 1 883.0 18.0 6.5 16.5 955.9 0.0 -2,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000039308 Ndst2 ENSMUST00000225419 ENSMUSP00000153275 TRANSLATION nonsense_mediated_decay - - - 513.0 0.0 0.0 0.0 730.7 0.0 -2,-5 0.0331 3 -2.0 MINOR ENSMUSG00000039308 Ndst2 ENSMUST00000223679 ENSMUSP00000153036 TRANSLATION protein_coding - CCDS26854.1 - 883.0 18.0 6.5 16.5 955.9 0.0 -2,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000039308 Ndst2 ENSMUST00000224234 - NO_TRANSLATION retained_intron ENSMUSG00000039308 Ndst2 ENSMUST00000225000 ENSMUSP00000153141 TRANSLATION protein_coding - CCDS26854.1 - 883.0 18.0 6.5 16.5 955.9 0.0 -2,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000039308 Ndst2 ENSMUST00000225320 - NO_TRANSLATION retained_intron ENSMUSG00000021977 1700129C05Rik ENSMUST00000022548 ENSMUSP00000022548 TRANSLATION protein_coding - CCDS27166.1 1 218.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.9052 - 0.0 PRINCIPAL:2 ENSMUSG00000021977 1700129C05Rik ENSMUST00000162271 ENSMUSP00000125240 TRANSLATION protein_coding - - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0286 - 0.0 ALTERNATIVE:2 ENSMUSG00000021977 1700129C05Rik ENSMUST00000162674 ENSMUSP00000125379 TRANSLATION protein_coding - - 3 117.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.028 - 0.0 ALTERNATIVE:2 ENSMUSG00000021977 1700129C05Rik ENSMUST00000159858 ENSMUSP00000125361 TRANSLATION protein_coding - - 5 191.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0515 - 0.0 ALTERNATIVE:2 ENSMUSG00000053253 Ndfip2 ENSMUST00000127286 - NO_TRANSLATION retained_intron ENSMUSG00000053253 Ndfip2 ENSMUST00000149358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053253 Ndfip2 ENSMUST00000181969 ENSMUSP00000137875 TRANSLATION protein_coding - CCDS49560.2 1 338.0 0.0 0.0 6.2 26.3 2.0 -1,3 1.0 2 7.91 PRINCIPAL:1 ENSMUSG00000053253 Ndfip2 ENSMUST00000138283 ENSMUSP00000121854 TRANSLATION protein_coding start - 1 312.0 0.0 0.0 0.0 26.7 2.0 -4,-5 0.0502 2 -2.0 MINOR ENSMUSG00000053253 Ndfip2 ENSMUST00000149781 - NO_TRANSLATION retained_intron ENSMUSG00000053253 Ndfip2 ENSMUST00000155351 - NO_TRANSLATION retained_intron ENSMUSG00000094460 Gm21560 ENSMUST00000168480 ENSMUSP00000133183 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.1 83.4 0.0 -4,-5 0.738 - 12.0 PRINCIPAL:1 ENSMUSG00000022126 Acod1 ENSMUST00000022722 ENSMUSP00000022722 TRANSLATION protein_coding - CCDS49558.1 1 488.0 0.0 4.0 0.4 406.5 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035235 Trim13 ENSMUST00000165015 ENSMUSP00000128509 TRANSLATION protein_coding - CCDS27186.1 1 407.0 16.0 0.1 11.3 74.4 1.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000035235 Trim13 ENSMUST00000039562 ENSMUSP00000045009 TRANSLATION protein_coding - CCDS27186.1 1 407.0 16.0 0.1 11.3 74.4 1.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000006526 Stimate ENSMUST00000226788 - NO_TRANSLATION retained_intron ENSMUSG00000006526 Stimate ENSMUST00000227776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006526 Stimate ENSMUST00000228046 - NO_TRANSLATION retained_intron ENSMUSG00000006526 Stimate ENSMUST00000227246 ENSMUSP00000154178 TRANSLATION nonsense_mediated_decay - - - 77.0 0.0 1.1 0.0 0.0 2.0 -4,-2 0.0005 - -2.0 MINOR ENSMUSG00000006526 Stimate ENSMUST00000228066 ENSMUSP00000154699 TRANSLATION nonsense_mediated_decay - - - 72.0 0.0 0.6 0.0 0.0 1.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000006526 Stimate ENSMUST00000006701 ENSMUSP00000006701 TRANSLATION protein_coding - CCDS26899.1 1 288.0 0.0 5.35 6.9 112.8 6.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000034522 Zfp395 ENSMUST00000224687 ENSMUSP00000153406 TRANSLATION protein_coding stop - - 93.0 0.0 0.0 0.0 73.8 0.0 -1,2 0.0003 - -2.0 MINOR ENSMUSG00000034522 Zfp395 ENSMUST00000224623 ENSMUSP00000153350 TRANSLATION protein_coding stop - - 101.0 0.0 0.0 0.0 88.8 0.0 -1,2 0.0064 - -2.0 MINOR ENSMUSG00000034522 Zfp395 ENSMUST00000066994 ENSMUSP00000064422 TRANSLATION protein_coding - CCDS49522.1 1 508.0 4.0 0.0 3.6 98.9 0.0 -1,2 1.0 2 11.0 PRINCIPAL:1 ENSMUSG00000034522 Zfp395 ENSMUST00000225512 - NO_TRANSLATION retained_intron ENSMUSG00000034522 Zfp395 ENSMUST00000225865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021846 Peli2 ENSMUST00000226828 ENSMUSP00000154648 TRANSLATION nonsense_mediated_decay - - - 45.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021846 Peli2 ENSMUST00000081029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021846 Peli2 ENSMUST00000228519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021846 Peli2 ENSMUST00000073150 ENSMUSP00000072894 TRANSLATION protein_coding - CCDS36901.1 1 419.0 6.0 3.305 36.9 730.5 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000021846 Peli2 ENSMUST00000226260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021846 Peli2 ENSMUST00000228456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021846 Peli2 ENSMUST00000227362 ENSMUSP00000154661 TRANSLATION protein_coding start - - 225.0 0.0 2.58 0.0 318.0 0.0 -4,-2 0.0007 2 -2.0 MINOR ENSMUSG00000021846 Peli2 ENSMUST00000247875 ENSMUSP00000159539 TRANSLATION protein_coding - - - 472.0 6.0 3.305 0.0 730.5 0.0 -4,-6 0.0922 6 18.0 MINOR ENSMUSG00000021846 Peli2 ENSMUST00000226513 ENSMUSP00000154335 TRANSLATION protein_coding - - - 155.0 0.0 0.725 0.0 69.1 0.0 -4,-5 0.0 1 0.84 MINOR ENSMUSG00000090472 Gm3047 ENSMUST00000164069 ENSMUSP00000132165 TRANSLATION protein_coding - - 5 267.0 0.0 4.0 0.0 72.3 0.0 -4,-5 0.7383 - 12.0 PRINCIPAL:1 ENSMUSG00000022178 Ajuba ENSMUST00000054487 ENSMUSP00000056977 TRANSLATION protein_coding - CCDS27093.1 1 547.0 23.0 4.865 10.5 108.5 0.0 -4,-6 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000022178 Ajuba ENSMUST00000226463 - NO_TRANSLATION retained_intron ENSMUSG00000019027 Dnah1 ENSMUST00000048603 ENSMUSP00000043281 TRANSLATION protein_coding - CCDS49436.1 5 4250.0 48.0 41.509 0.4 2685.0 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000019027 Dnah1 ENSMUST00000228429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054051 Ercc6 ENSMUST00000066807 ENSMUSP00000066256 TRANSLATION protein_coding - CCDS36868.1 5 1481.0 4.0 10.95 0.0 311.6 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000054051 Ercc6 ENSMUST00000228035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054051 Ercc6 ENSMUST00000226285 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054051 Ercc6 ENSMUST00000228017 - NO_TRANSLATION retained_intron ENSMUSG00000054051 Ercc6 ENSMUST00000227434 - NO_TRANSLATION retained_intron ENSMUSG00000054051 Ercc6 ENSMUST00000228549 ENSMUSP00000154246 TRANSLATION nonsense_mediated_decay start - - 48.0 0.0 0.8 0.0 40.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021951 Eef1akmt1 ENSMUST00000225504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021951 Eef1akmt1 ENSMUST00000022518 ENSMUSP00000022518 TRANSLATION protein_coding - CCDS27157.1 1 224.0 0.0 2.85 0.1 187.6 0.0 -4,-5 0.254 6 12.0 MINOR ENSMUSG00000021951 Eef1akmt1 ENSMUST00000239099 ENSMUSP00000159159 TRANSLATION protein_coding - - - 214.0 0.0 2.85 12.5 187.6 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000021796 Bmpr1a ENSMUST00000171343 ENSMUSP00000126852 TRANSLATION protein_coding stop - 5 108.0 0.0 2.0 0.0 34.2 0.0 2,-2 0.0 - -2.0 MINOR ENSMUSG00000021796 Bmpr1a ENSMUST00000165280 ENSMUSP00000131984 TRANSLATION protein_coding - - 1 500.0 21.0 8.2 0.0 221.4 2.0 2,-2 0.0197 3 15.366 MINOR ENSMUSG00000021796 Bmpr1a ENSMUST00000049005 ENSMUSP00000035900 TRANSLATION protein_coding - CCDS26938.1 1 532.0 21.0 9.2 24.3 232.0 2.0 2,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000021796 Bmpr1a ENSMUST00000171551 ENSMUSP00000129927 TRANSLATION protein_coding stop - 5 38.0 0.0 0.0 0.0 0.0 0.0 3,-1 0.0011 - -2.0 MINOR ENSMUSG00000076870 Trdj1 ENSMUST00000103682 ENSMUSP00000143430 TRANSLATION TR_J_gene start/stop - - 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000053961 Ang5 ENSMUST00000226667 ENSMUSP00000159551 TRANSLATION protein_coding - CCDS56951.1 - 145.0 5.0 1.0 3.7 120.4 0.0 4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000015971 Actr8 ENSMUST00000225811 ENSMUSP00000153459 TRANSLATION protein_coding stop - - 160.0 0.0 3.5 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000015971 Actr8 ENSMUST00000225793 - NO_TRANSLATION retained_intron ENSMUSG00000015971 Actr8 ENSMUST00000016115 ENSMUSP00000016115 TRANSLATION protein_coding - CCDS26891.1 1 624.0 12.0 10.15 0.0 108.6 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000015971 Actr8 ENSMUST00000225161 - NO_TRANSLATION retained_intron ENSMUSG00000015971 Actr8 ENSMUST00000224797 ENSMUSP00000153076 TRANSLATION protein_coding - CCDS26891.1 - 624.0 12.0 10.15 0.0 108.6 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000015971 Actr8 ENSMUST00000224343 - NO_TRANSLATION retained_intron ENSMUSG00000015971 Actr8 ENSMUST00000224846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015971 Actr8 ENSMUST00000224067 - NO_TRANSLATION retained_intron ENSMUSG00000015971 Actr8 ENSMUST00000225368 - NO_TRANSLATION retained_intron ENSMUSG00000022132 Cldn10 ENSMUST00000100314 ENSMUSP00000097889 TRANSLATION protein_coding - CCDS37010.1 1 231.0 0.0 3.35 22.6 163.5 8.0 1,-3 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022132 Cldn10 ENSMUST00000047761 ENSMUSP00000041616 TRANSLATION protein_coding - CCDS37009.1 1 229.0 0.0 3.25 17.7 140.8 7.0 -2,-6 0.8112 3 13.532 MINOR ENSMUSG00000022132 Cldn10 ENSMUST00000071546 ENSMUSP00000071476 TRANSLATION protein_coding - CCDS49566.1 1 193.0 0.0 2.25 0.1 111.5 5.0 -2,-6 0.0311 3 6.678 MINOR ENSMUSG00000022210 Dhrs4 ENSMUST00000228353 ENSMUSP00000153847 TRANSLATION protein_coding start - - 194.0 24.0 3.9 0.0 74.1 0.0 -4,0 0.0 3 -2.0 MINOR ENSMUSG00000022210 Dhrs4 ENSMUST00000227488 ENSMUSP00000154006 TRANSLATION protein_coding stop - - 124.0 13.0 3.25 0.0 48.2 0.0 -4,0 0.0 4 -2.0 MINOR ENSMUSG00000022210 Dhrs4 ENSMUST00000226902 ENSMUSP00000154474 TRANSLATION protein_coding start/stop - - 179.0 20.0 4.5 0.0 83.6 0.0 -4,0 0.0 7 -2.0 MINOR ENSMUSG00000022210 Dhrs4 ENSMUST00000226168 ENSMUSP00000154481 TRANSLATION protein_coding - - - 216.0 25.0 4.95 0.0 122.8 0.0 -4,0 0.0 6 7.476 MINOR ENSMUSG00000022210 Dhrs4 ENSMUST00000022821 ENSMUSP00000022821 TRANSLATION protein_coding - CCDS27111.1 1 279.0 29.0 7.25 9.3 177.1 0.0 -4,0 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000022210 Dhrs4 ENSMUST00000226298 ENSMUSP00000154666 TRANSLATION protein_coding start - - 76.0 6.0 2.25 0.0 49.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022210 Dhrs4 ENSMUST00000227542 - NO_TRANSLATION retained_intron ENSMUSG00000022210 Dhrs4 ENSMUST00000227513 - NO_TRANSLATION retained_intron ENSMUSG00000049011 Or4k5 ENSMUST00000215327 ENSMUSP00000151127 TRANSLATION protein_coding - CCDS27005.1 5 323.0 0.0 1.0 9.5 155.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049011 Or4k5 ENSMUST00000061020 ENSMUSP00000051755 TRANSLATION protein_coding - CCDS27005.1 - 323.0 0.0 1.0 9.5 155.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049011 Or4k5 ENSMUST00000215451 ENSMUSP00000149189 TRANSLATION protein_coding - CCDS27005.1 5 323.0 0.0 1.0 9.5 155.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049011 Or4k5 ENSMUST00000213163 ENSMUSP00000148960 TRANSLATION protein_coding - CCDS27005.1 5 323.0 0.0 1.0 9.5 155.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022114 Spry2 ENSMUST00000022709 ENSMUSP00000022709 TRANSLATION protein_coding - CCDS27321.1 1 315.0 0.0 0.5 20.7 121.2 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000022095 Fhip2b ENSMUST00000022690 ENSMUSP00000022690 TRANSLATION protein_coding - CCDS49537.1 5 744.0 0.0 0.0 6.4 364.1 0.0 -4,-6 1.0 8 8.0 PRINCIPAL:1 ENSMUSG00000095304 Plac9 ENSMUST00000183431 ENSMUSP00000139157 TRANSLATION protein_coding - - 3 47.0 0.0 1.0 0.0 89.3 0.0 -4,-5 0.0 - 7.392 MINOR ENSMUSG00000095304 Plac9 ENSMUST00000052286 ENSMUSP00000056665 TRANSLATION protein_coding - CCDS36832.1 1 108.0 0.0 1.45 0.0 135.1 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095304 Plac9 ENSMUST00000183725 ENSMUSP00000139368 TRANSLATION protein_coding - - 3 47.0 0.0 1.0 0.0 89.3 0.0 -4,-5 0.0 - 7.392 MINOR ENSMUSG00000094231 Trav9n-4 ENSMUST00000103626 ENSMUSP00000100403 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.1 0.0 57.6 0.0 3,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000071547 Nt5dc2 ENSMUST00000090212 ENSMUSP00000087680 TRANSLATION protein_coding - CCDS36852.1 1 390.0 0.0 9.75 0.0 401.1 0.0 -4,-6 0.0221 12 2.502 MINOR ENSMUSG00000071547 Nt5dc2 ENSMUST00000227690 - NO_TRANSLATION retained_intron ENSMUSG00000071547 Nt5dc2 ENSMUST00000227096 ENSMUSP00000154475 TRANSLATION protein_coding - - - 553.0 0.0 11.5 1.5 517.3 0.0 -4,0 0.8216 14 9.0 PRINCIPAL:2 ENSMUSG00000071547 Nt5dc2 ENSMUST00000226588 ENSMUSP00000153794 TRANSLATION protein_coding stop - - 281.0 0.0 6.5 0.0 261.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000071547 Nt5dc2 ENSMUST00000226975 ENSMUSP00000154280 TRANSLATION protein_coding start - - 464.0 0.0 10.75 0.0 451.9 0.0 -4,-6 0.0243 12 -2.0 MINOR ENSMUSG00000071547 Nt5dc2 ENSMUST00000227794 ENSMUSP00000154613 TRANSLATION protein_coding - - - 493.0 0.0 11.5 0.0 517.3 0.0 -3,-6 0.0929 13 8.0 ALTERNATIVE:2 ENSMUSG00000021273 Fdft1 ENSMUST00000054963 ENSMUSP00000055313 TRANSLATION protein_coding - CCDS27198.1 1 416.0 3.0 6.8 21.0 137.0 2.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000021273 Fdft1 ENSMUST00000223810 ENSMUSP00000153238 TRANSLATION nonsense_mediated_decay - - - 135.0 3.0 2.0 0.0 31.0 0.0 -4,-5 0.0005 2 -2.0 MINOR ENSMUSG00000021273 Fdft1 ENSMUST00000224267 - NO_TRANSLATION retained_intron ENSMUSG00000021273 Fdft1 ENSMUST00000238526 ENSMUSP00000158805 TRANSLATION protein_coding - - - 460.0 3.0 6.8 2.1 137.0 2.0 -2,0 0.2634 5 15.22 MINOR ENSMUSG00000021273 Fdft1 ENSMUST00000224625 ENSMUSP00000153671 TRANSLATION protein_coding - CCDS27198.1 - 416.0 3.0 6.8 21.0 137.0 2.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000006281 Tep1 ENSMUST00000226789 - NO_TRANSLATION retained_intron ENSMUSG00000006281 Tep1 ENSMUST00000226430 ENSMUSP00000154492 TRANSLATION nonsense_mediated_decay start - - 489.0 0.0 0.0 0.0 70.6 0.0 -4,-6 0.0015 8 -2.0 MINOR ENSMUSG00000006281 Tep1 ENSMUST00000227526 ENSMUSP00000153878 TRANSLATION nonsense_mediated_decay start - - 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000006281 Tep1 ENSMUST00000227193 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006281 Tep1 ENSMUST00000226222 ENSMUSP00000154505 TRANSLATION protein_coding start - - 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006281 Tep1 ENSMUST00000006444 ENSMUSP00000006444 TRANSLATION protein_coding - CCDS36907.1 1 2629.0 0.0 7.7555 0.1 960.7 0.0 -4,-5 1.0 34 12.0 PRINCIPAL:1 ENSMUSG00000006281 Tep1 ENSMUST00000228562 - NO_TRANSLATION retained_intron ENSMUSG00000006281 Tep1 ENSMUST00000227228 - NO_TRANSLATION retained_intron ENSMUSG00000052395 Rft1 ENSMUST00000226817 ENSMUSP00000154050 TRANSLATION nonsense_mediated_decay - - - 380.0 0.0 7.95 0.0 317.5 12.0 -2,-4 0.0038 2 -2.0 MINOR ENSMUSG00000052395 Rft1 ENSMUST00000228686 ENSMUSP00000154587 TRANSLATION nonsense_mediated_decay - - - 280.0 0.0 5.8 0.0 217.3 11.0 -2,-4 0.0037 2 -2.0 MINOR ENSMUSG00000052395 Rft1 ENSMUST00000228262 - NO_TRANSLATION retained_intron ENSMUSG00000052395 Rft1 ENSMUST00000064230 ENSMUSP00000064153 TRANSLATION protein_coding - CCDS26896.1 1 541.0 0.0 11.1 21.2 457.1 17.0 -2,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000052395 Rft1 ENSMUST00000228211 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052395 Rft1 ENSMUST00000226805 - NO_TRANSLATION retained_intron ENSMUSG00000052395 Rft1 ENSMUST00000227338 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000076866 Trdv2-2 ENSMUST00000103678 ENSMUSP00000100455 TRANSLATION TR_V_gene stop - - 116.0 0.0 1.1 0.0 62.6 0.0 3,-2 0.8204 - -2.0 PRINCIPAL:1 ENSMUSG00000079388 2610042L04Rik ENSMUST00000165466 ENSMUSP00000132127 TRANSLATION protein_coding - CCDS84074.1 1 150.0 0.0 3.0 0.0 69.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021932 Rnaseh2b ENSMUST00000169728 ENSMUSP00000132267 TRANSLATION nonsense_mediated_decay start - 3 44.0 0.0 1.1 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000021932 Rnaseh2b ENSMUST00000156608 - NO_TRANSLATION retained_intron ENSMUSG00000021932 Rnaseh2b ENSMUST00000022499 ENSMUSP00000022499 TRANSLATION protein_coding - CCDS27189.1 1 308.0 0.0 6.28 4.2 184.5 0.0 -4,-2 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000021932 Rnaseh2b ENSMUST00000166879 ENSMUSP00000129165 TRANSLATION protein_coding stop - 3 65.0 0.0 2.0 0.0 59.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000096470 Gm9603 ENSMUST00000165814 ENSMUSP00000126547 TRANSLATION protein_coding - - 5 270.0 0.0 4.0 0.0 80.1 0.0 -4,-5 0.7383 - 12.0 PRINCIPAL:1 ENSMUSG00000041479 Syt15 ENSMUST00000035351 ENSMUSP00000036755 TRANSLATION protein_coding - CCDS26934.1 1 418.0 0.0 2.88 2.2 90.6 1.0 -2,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000041479 Syt15 ENSMUST00000147298 - NO_TRANSLATION retained_intron ENSMUSG00000041479 Syt15 ENSMUST00000119693 ENSMUSP00000113725 TRANSLATION protein_coding - CCDS49444.1 1 389.0 0.0 2.6 0.0 85.2 1.0 -2,-5 0.0269 3 11.058 MINOR ENSMUSG00000051615 Rap2a ENSMUST00000062117 ENSMUSP00000056433 TRANSLATION protein_coding - CCDS27341.1 1 183.0 24.0 2.0 36.9 192.1 0.0 -4,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000095607 Trav5-4 ENSMUST00000103664 ENSMUSP00000100441 TRANSLATION TR_V_gene stop - - 114.0 0.0 1.3 0.0 61.4 0.0 1,-3 0.8262 - -2.0 PRINCIPAL:1 ENSMUSG00000022203 Efs ENSMUST00000022813 ENSMUSP00000022813 TRANSLATION protein_coding - CCDS36925.1 1 560.0 0.0 2.566 9.2 214.6 0.0 -4,-6 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000022203 Efs ENSMUST00000227587 ENSMUSP00000154047 TRANSLATION nonsense_mediated_decay - - - 45.0 0.0 0.816 0.0 25.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022203 Efs ENSMUST00000227037 ENSMUSP00000154657 TRANSLATION protein_coding - - - 467.0 0.0 0.666 2.8 165.3 0.0 -4,-7 0.0598 4 5.262 MINOR ENSMUSG00000052099 Prss51 ENSMUST00000063785 ENSMUSP00000066111 TRANSLATION protein_coding - CCDS84145.1 1 222.0 4.0 1.575 0.9 106.7 0.0 -4,-5 0.0124 - 9.036 MINOR ENSMUSG00000052099 Prss51 ENSMUST00000165710 ENSMUSP00000132814 TRANSLATION protein_coding - CCDS56964.1 1 240.0 4.0 1.839 1.3 110.3 0.0 -4,-7 0.0084 - 10.78 MINOR ENSMUSG00000052099 Prss51 ENSMUST00000170709 ENSMUSP00000126778 TRANSLATION protein_coding stop - 3 94.0 1.0 0.7 0.0 42.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000052099 Prss51 ENSMUST00000224112 ENSMUSP00000153617 TRANSLATION protein_coding - - - 319.0 6.0 3.169 0.4 169.7 0.0 2,-2 0.8471 - 18.0 PRINCIPAL:1 ENSMUSG00000076923 Traj5 ENSMUST00000103735 ENSMUSP00000143114 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5648 - -2.0 PRINCIPAL:1 ENSMUSG00000076879 Traj52 ENSMUST00000103691 ENSMUSP00000143288 TRANSLATION TR_J_gene start/stop - - 22.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000095024 Gm5458 ENSMUST00000096121 ENSMUSP00000093833 TRANSLATION protein_coding - CCDS49405.1 2 204.0 0.0 3.0 0.0 74.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094562 Trav13-4-dv7 ENSMUST00000180380 ENSMUSP00000137919 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.0 0.0 52.6 0.0 3,-1 0.8253 - -2.0 PRINCIPAL:5 ENSMUSG00000094562 Trav13-4-dv7 ENSMUST00000184905 ENSMUSP00000138894 TRANSLATION TR_V_gene start/stop - - 88.0 0.0 1.0 0.0 52.3 0.0 -4,-5 0.0767 - -2.0 ALTERNATIVE:2 ENSMUSG00000096417 Trav7-2 ENSMUST00000103636 ENSMUSP00000100413 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.4 0.0 65.0 0.0 3,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000021785 Ngly1 ENSMUST00000224656 ENSMUSP00000152998 TRANSLATION protein_coding - - - 596.0 12.0 11.85 0.0 355.9 0.0 -2,-4 0.0065 18 14.088 MINOR ENSMUSG00000021785 Ngly1 ENSMUST00000224154 ENSMUSP00000153445 TRANSLATION protein_coding stop - - 111.0 0.0 2.75 0.0 79.8 0.0 -2,-4 0.0 3 -2.0 MINOR ENSMUSG00000021785 Ngly1 ENSMUST00000223879 - NO_TRANSLATION retained_intron ENSMUSG00000021785 Ngly1 ENSMUST00000022310 ENSMUSP00000022310 TRANSLATION protein_coding - CCDS26832.1 1 651.0 12.0 12.85 1.2 387.8 0.0 -2,-4 0.9953 20 19.0 PRINCIPAL:1 ENSMUSG00000021785 Ngly1 ENSMUST00000223973 ENSMUSP00000153025 TRANSLATION protein_coding start/stop - - 251.0 4.0 4.6 0.0 0.0 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000021785 Ngly1 ENSMUST00000226089 - NO_TRANSLATION retained_intron ENSMUSG00000021785 Ngly1 ENSMUST00000153109 - NO_TRANSLATION retained_intron ENSMUSG00000021785 Ngly1 ENSMUST00000143947 - NO_TRANSLATION retained_intron ENSMUSG00000076764 Trav6-2 ENSMUST00000198058 ENSMUSP00000142452 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.1 0.0 40.5 0.0 4,-1 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000044519 Zfp488 ENSMUST00000166737 ENSMUSP00000132436 TRANSLATION protein_coding - CCDS26930.2 1 337.0 7.0 0.0 0.4 0.0 0.0 -4,-6 0.8327 - 6.0 PRINCIPAL:1 ENSMUSG00000094925 Gm5798 ENSMUST00000164613 ENSMUSP00000128907 TRANSLATION protein_coding - - 5 198.0 0.0 3.0 0.0 85.0 0.0 -4,-7 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000014547 Wdfy2 ENSMUST00000014691 ENSMUSP00000014691 TRANSLATION protein_coding - CCDS27192.1 1 400.0 0.0 10.33 34.2 114.8 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000014547 Wdfy2 ENSMUST00000224948 - NO_TRANSLATION retained_intron ENSMUSG00000022023 Wbp4 ENSMUST00000228161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022023 Wbp4 ENSMUST00000228105 - NO_TRANSLATION retained_intron ENSMUSG00000022023 Wbp4 ENSMUST00000227584 ENSMUSP00000154101 TRANSLATION nonsense_mediated_decay - - - 315.0 0.0 4.25 0.0 132.3 0.0 -4,-5 0.0193 3 -2.0 MINOR ENSMUSG00000022023 Wbp4 ENSMUST00000022601 ENSMUSP00000022601 TRANSLATION protein_coding - CCDS27300.1 1 376.0 0.0 4.25 7.2 132.3 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000076887 Traj43 ENSMUST00000103699 ENSMUSP00000142598 TRANSLATION TR_J_gene start/stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000071613 Gm10340 ENSMUST00000170790 ENSMUSP00000130159 TRANSLATION protein_coding - - 5 205.0 0.0 3.0 0.0 74.5 0.0 -4,-5 0.7376 - 12.0 PRINCIPAL:1 ENSMUSG00000076906 Traj23 ENSMUST00000103718 ENSMUSP00000142485 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000114852 Gm47189 ENSMUST00000226078 ENSMUSP00000153414 TRANSLATION protein_coding - - - 184.0 0.0 3.15 0.0 63.9 0.0 -4,-6 0.738 - 12.0 PRINCIPAL:1 ENSMUSG00000022035 Ccdc25 ENSMUST00000226027 - NO_TRANSLATION retained_intron ENSMUSG00000022035 Ccdc25 ENSMUST00000022614 ENSMUSP00000022614 TRANSLATION protein_coding - CCDS27217.1 1 208.0 0.0 4.83 33.4 97.1 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022035 Ccdc25 ENSMUST00000225823 - NO_TRANSLATION retained_intron ENSMUSG00000022199 Slc22a17 ENSMUST00000226690 ENSMUSP00000154681 TRANSLATION nonsense_mediated_decay start - - 198.0 0.0 2.785 0.0 23.6 10.0 2,-3 0.008 2 -2.0 MINOR ENSMUSG00000022199 Slc22a17 ENSMUST00000228249 - NO_TRANSLATION retained_intron ENSMUSG00000022199 Slc22a17 ENSMUST00000226467 ENSMUSP00000153789 TRANSLATION nonsense_mediated_decay start - - 418.0 0.0 5.035 0.0 54.2 15.0 1,-2 0.0116 2 -2.0 MINOR ENSMUSG00000022199 Slc22a17 ENSMUST00000226718 - NO_TRANSLATION retained_intron ENSMUSG00000022199 Slc22a17 ENSMUST00000227880 ENSMUSP00000153800 TRANSLATION nonsense_mediated_decay - - - 240.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022199 Slc22a17 ENSMUST00000050772 ENSMUSP00000049676 TRANSLATION protein_coding - CCDS36924.1 1 401.0 0.0 5.035 0.0 57.2 20.0 1,-5 0.0961 4 4.002 MINOR ENSMUSG00000022199 Slc22a17 ENSMUST00000228588 ENSMUSP00000154469 TRANSLATION nonsense_mediated_decay start - - 209.0 0.0 1.445 0.0 0.0 5.0 -4,-5 0.0075 - -2.0 MINOR ENSMUSG00000022199 Slc22a17 ENSMUST00000228495 ENSMUSP00000154165 TRANSLATION protein_coding - - - 627.0 0.0 6.035 1.0 66.2 20.0 -4,-7 0.8015 5 6.0 PRINCIPAL:4 ENSMUSG00000022199 Slc22a17 ENSMUST00000226456 - NO_TRANSLATION retained_intron ENSMUSG00000022199 Slc22a17 ENSMUST00000227600 - NO_TRANSLATION retained_intron ENSMUSG00000022199 Slc22a17 ENSMUST00000228119 ENSMUSP00000154217 TRANSLATION protein_coding - - - 626.0 0.0 6.035 1.0 66.2 20.0 -4,-7 0.7385 5 6.0 ALTERNATIVE:2 ENSMUSG00000022199 Slc22a17 ENSMUST00000231305 ENSMUSP00000155879 TRANSLATION protein_coding - - - 240.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000037697 Ddhd1 ENSMUST00000141487 ENSMUSP00000133358 TRANSLATION nonsense_mediated_decay start - 1 156.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 3 -2.0 MINOR ENSMUSG00000037697 Ddhd1 ENSMUST00000226301 ENSMUSP00000154065 TRANSLATION protein_coding start/stop - - 227.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 2 -2.0 MINOR ENSMUSG00000037697 Ddhd1 ENSMUST00000111828 ENSMUSP00000107459 TRANSLATION protein_coding - CCDS36894.1 1 884.0 0.0 0.0 0.4 178.8 0.0 -4,-6 0.5125 15 0.0 ALTERNATIVE:2 ENSMUSG00000037697 Ddhd1 ENSMUST00000153547 - NO_TRANSLATION retained_intron ENSMUSG00000037697 Ddhd1 ENSMUST00000126428 - NO_TRANSLATION retained_intron ENSMUSG00000037697 Ddhd1 ENSMUST00000156758 ENSMUSP00000121837 TRANSLATION nonsense_mediated_decay start - 5 182.0 0.0 0.0 0.0 60.9 0.0 -4,-7 0.0002 4 -2.0 MINOR ENSMUSG00000037697 Ddhd1 ENSMUST00000152110 - NO_TRANSLATION retained_intron ENSMUSG00000037697 Ddhd1 ENSMUST00000051310 ENSMUSP00000050088 TRANSLATION protein_coding - CCDS26978.1 1 856.0 0.0 0.0 0.4 178.2 0.0 -4,-6 0.8514 14 0.0 PRINCIPAL:2 ENSMUSG00000037697 Ddhd1 ENSMUST00000087320 ENSMUSP00000084577 TRANSLATION protein_coding - CCDS36895.1 1 918.0 0.0 0.0 0.4 178.8 0.0 -4,-6 0.4061 17 0.0 ALTERNATIVE:2 ENSMUSG00000037697 Ddhd1 ENSMUST00000226559 - NO_TRANSLATION retained_intron ENSMUSG00000037697 Ddhd1 ENSMUST00000147551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037697 Ddhd1 ENSMUST00000149286 ENSMUSP00000118848 TRANSLATION nonsense_mediated_decay - - 1 352.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0022 1 -2.0 MINOR ENSMUSG00000037697 Ddhd1 ENSMUST00000129599 - NO_TRANSLATION retained_intron ENSMUSG00000021816 Ppp3cb ENSMUST00000162217 - NO_TRANSLATION retained_intron ENSMUSG00000021816 Ppp3cb ENSMUST00000161445 ENSMUSP00000125630 TRANSLATION protein_coding - CCDS79266.1 1 524.0 10.0 10.12 6.3 129.9 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:4 ENSMUSG00000021816 Ppp3cb ENSMUST00000159027 ENSMUSP00000125722 TRANSLATION protein_coding - CCDS26846.1 1 525.0 10.0 10.12 5.4 129.9 0.0 -4,-7 0.981 9 15.66 ALTERNATIVE:1 ENSMUSG00000021816 Ppp3cb ENSMUST00000161989 ENSMUSP00000125582 TRANSLATION protein_coding - - 1 497.0 10.0 10.0 0.0 129.9 0.0 -4,-7 0.0301 7 13.76 MINOR ENSMUSG00000021816 Ppp3cb ENSMUST00000022355 ENSMUSP00000022355 TRANSLATION protein_coding - CCDS79267.1 5 515.0 10.0 10.12 5.4 129.9 0.0 -4,-7 0.9023 9 15.66 ALTERNATIVE:1 ENSMUSG00000021816 Ppp3cb ENSMUST00000160812 - NO_TRANSLATION retained_intron ENSMUSG00000021816 Ppp3cb ENSMUST00000223854 - NO_TRANSLATION retained_intron ENSMUSG00000021816 Ppp3cb ENSMUST00000161332 - NO_TRANSLATION retained_intron ENSMUSG00000021816 Ppp3cb ENSMUST00000162107 - NO_TRANSLATION retained_intron ENSMUSG00000063410 Stk24 ENSMUST00000079817 ENSMUSP00000078746 TRANSLATION protein_coding - CCDS37016.1 1 431.0 21.0 5.9 22.5 240.7 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000063410 Stk24 ENSMUST00000227273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063410 Stk24 ENSMUST00000226161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063410 Stk24 ENSMUST00000227917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063410 Stk24 ENSMUST00000226158 - NO_TRANSLATION retained_intron ENSMUSG00000037580 Gch1 ENSMUST00000227883 - NO_TRANSLATION retained_intron ENSMUSG00000037580 Gch1 ENSMUST00000089959 ENSMUSP00000087405 TRANSLATION protein_coding - CCDS26984.1 1 241.0 10.0 4.58 2.3 255.2 0.0 -4,-7 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000021814 Anxa7 ENSMUST00000224410 - NO_TRANSLATION retained_intron ENSMUSG00000021814 Anxa7 ENSMUST00000225132 ENSMUSP00000153130 TRANSLATION protein_coding stop - - 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021814 Anxa7 ENSMUST00000224975 ENSMUSP00000153669 TRANSLATION protein_coding - CCDS26845.1 - 463.0 26.0 7.7995 1.1 328.1 0.0 -4,-5 0.3988 17 17.763 MINOR ENSMUSG00000021814 Anxa7 ENSMUST00000225118 - NO_TRANSLATION retained_intron ENSMUSG00000021814 Anxa7 ENSMUST00000225941 ENSMUSP00000153174 TRANSLATION protein_coding start - - 72.0 4.0 2.066 0.0 62.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000021814 Anxa7 ENSMUST00000100844 ENSMUSP00000098405 TRANSLATION protein_coding - - 1 485.0 26.0 7.9495 2.6 328.1 0.0 -4,-5 1.0 17 19.0 PRINCIPAL:1 ENSMUSG00000021814 Anxa7 ENSMUST00000226001 - NO_TRANSLATION retained_intron ENSMUSG00000021814 Anxa7 ENSMUST00000224344 - NO_TRANSLATION retained_intron ENSMUSG00000021814 Anxa7 ENSMUST00000065504 ENSMUSP00000066035 TRANSLATION protein_coding - CCDS26845.1 1 463.0 26.0 7.7995 1.1 328.1 0.0 -4,-5 0.3988 17 17.763 MINOR ENSMUSG00000021814 Anxa7 ENSMUST00000223681 - NO_TRANSLATION retained_intron ENSMUSG00000021814 Anxa7 ENSMUST00000223960 - NO_TRANSLATION retained_intron ENSMUSG00000057132 Rpgrip1 ENSMUST00000181297 - NO_TRANSLATION retained_intron ENSMUSG00000057132 Rpgrip1 ENSMUST00000181709 ENSMUSP00000137664 TRANSLATION nonsense_mediated_decay start - 5 191.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057132 Rpgrip1 ENSMUST00000180500 ENSMUSP00000137667 TRANSLATION protein_coding start/stop - 3 201.0 0.0 3.08 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000057132 Rpgrip1 ENSMUST00000181823 - NO_TRANSLATION retained_intron ENSMUSG00000057132 Rpgrip1 ENSMUST00000181736 ENSMUSP00000137892 TRANSLATION nonsense_mediated_decay start - 5 82.0 0.0 2.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057132 Rpgrip1 ENSMUST00000111600 ENSMUSP00000107227 TRANSLATION protein_coding - CCDS49490.1 1 1127.0 0.0 3.83 0.0 22.9 0.0 -4,-5 0.0972 - 3.8 MINOR ENSMUSG00000057132 Rpgrip1 ENSMUST00000181401 ENSMUSP00000138027 TRANSLATION protein_coding - - 1 1320.0 0.0 5.18 0.0 190.1 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:4 ENSMUSG00000057132 Rpgrip1 ENSMUST00000180433 - NO_TRANSLATION retained_intron ENSMUSG00000057132 Rpgrip1 ENSMUST00000181208 - NO_TRANSLATION retained_intron ENSMUSG00000057132 Rpgrip1 ENSMUST00000180901 - NO_TRANSLATION retained_intron ENSMUSG00000057132 Rpgrip1 ENSMUST00000181673 - NO_TRANSLATION retained_intron ENSMUSG00000057132 Rpgrip1 ENSMUST00000180484 - NO_TRANSLATION retained_intron ENSMUSG00000057132 Rpgrip1 ENSMUST00000111603 ENSMUSP00000107230 TRANSLATION protein_coding - CCDS36918.1 1 1331.0 0.0 5.18 0.0 190.1 0.0 -4,-5 0.9711 - 8.0 ALTERNATIVE:2 ENSMUSG00000057132 Rpgrip1 ENSMUST00000181627 ENSMUSP00000137840 TRANSLATION nonsense_mediated_decay start - 5 91.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057132 Rpgrip1 ENSMUST00000180388 - NO_TRANSLATION retained_intron ENSMUSG00000057132 Rpgrip1 ENSMUST00000180646 ENSMUSP00000137751 TRANSLATION nonsense_mediated_decay - - 1 289.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000057132 Rpgrip1 ENSMUST00000180513 ENSMUSP00000137991 TRANSLATION protein_coding start/stop - 5 71.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057132 Rpgrip1 ENSMUST00000181862 - NO_TRANSLATION retained_intron ENSMUSG00000057132 Rpgrip1 ENSMUST00000181017 ENSMUSP00000137900 TRANSLATION protein_coding start - 2 295.0 0.0 3.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095572 Trav4n-3 ENSMUST00000103618 ENSMUSP00000100395 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.3 0.0 46.7 0.0 1,-2 0.8235 - -2.0 PRINCIPAL:1 ENSMUSG00000090364 Gm3043 ENSMUST00000170639 ENSMUSP00000127050 TRANSLATION protein_coding - - 1 218.0 0.0 3.5 0.0 68.7 0.0 -4,-5 0.7384 - 12.0 PRINCIPAL:1 ENSMUSG00000096869 Gm6676 ENSMUST00000166493 ENSMUSP00000130300 TRANSLATION protein_coding - - 1 205.0 0.0 3.0 0.0 84.4 0.0 -4,-5 0.738 - 12.0 PRINCIPAL:1 ENSMUSG00000034532 Fbxo16 ENSMUST00000226005 ENSMUSP00000153094 TRANSLATION protein_coding - - - 289.0 0.0 2.7 1.1 37.9 0.0 -4,-5 0.1334 - 8.5 ALTERNATIVE:2 ENSMUSG00000034532 Fbxo16 ENSMUST00000224629 ENSMUSP00000153015 TRANSLATION protein_coding - CCDS36956.1 - 334.0 0.0 2.7 1.2 37.7 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000034532 Fbxo16 ENSMUST00000169656 ENSMUSP00000130805 TRANSLATION protein_coding - - 1 308.0 0.0 2.7 0.0 37.7 0.0 -4,-5 0.0558 - 8.0 ALTERNATIVE:2 ENSMUSG00000034532 Fbxo16 ENSMUST00000223608 - NO_TRANSLATION retained_intron ENSMUSG00000072115 Ang ENSMUST00000171688 ENSMUSP00000132084 TRANSLATION protein_coding - CCDS27034.1 1 145.0 5.0 1.0 3.7 122.4 0.0 4,-1 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000072115 Ang ENSMUST00000069011 ENSMUSP00000067434 TRANSLATION protein_coding - CCDS27034.1 1 145.0 5.0 1.0 3.7 122.4 0.0 4,-1 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000015970 Chdh ENSMUST00000118917 ENSMUSP00000112916 TRANSLATION protein_coding - CCDS26892.1 1 596.0 31.0 7.0 6.9 139.4 0.0 -4,0 1.0 22 20.0 PRINCIPAL:1 ENSMUSG00000015970 Chdh ENSMUST00000125796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015970 Chdh ENSMUST00000067620 ENSMUSP00000065542 TRANSLATION protein_coding - CCDS26892.1 1 596.0 31.0 7.0 6.9 139.4 0.0 -4,0 1.0 22 20.0 PRINCIPAL:1 ENSMUSG00000041028 Ghitm ENSMUST00000224769 ENSMUSP00000153458 TRANSLATION protein_coding stop - - 198.0 0.0 2.2 0.0 0.0 4.0 -4,0 0.0042 2 -2.0 MINOR ENSMUSG00000041028 Ghitm ENSMUST00000165649 ENSMUSP00000129712 TRANSLATION protein_coding - CCDS26953.1 1 346.0 0.0 4.8 23.8 137.0 7.0 -4,0 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000041028 Ghitm ENSMUST00000223921 - NO_TRANSLATION retained_intron ENSMUSG00000041028 Ghitm ENSMUST00000042564 ENSMUSP00000046212 TRANSLATION protein_coding - CCDS26953.1 1 346.0 0.0 4.8 23.8 137.0 7.0 -4,0 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000084902 Cdhr18 ENSMUST00000144914 ENSMUSP00000121887 TRANSLATION protein_coding - - 5 860.0 29.0 5.87 0.3 57.7 0.0 4,-1 0.8957 - 18.0 PRINCIPAL:1 ENSMUSG00000047716 Or11j4 ENSMUST00000058965 ENSMUSP00000062700 TRANSLATION protein_coding - CCDS27013.1 - 312.0 0.0 1.0 7.2 154.2 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047716 Or11j4 ENSMUST00000215227 ENSMUSP00000150611 TRANSLATION protein_coding - CCDS27013.1 5 312.0 0.0 1.0 7.2 154.2 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047716 Or11j4 ENSMUST00000215263 ENSMUSP00000149654 TRANSLATION protein_coding - CCDS27013.1 5 312.0 0.0 1.0 7.2 154.2 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047716 Or11j4 ENSMUST00000213755 ENSMUSP00000148975 TRANSLATION protein_coding - CCDS27013.1 5 312.0 0.0 1.0 7.2 154.2 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047716 Or11j4 ENSMUST00000213402 ENSMUSP00000150576 TRANSLATION protein_coding - CCDS27013.1 5 312.0 0.0 1.0 7.2 154.2 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000000606 Vmn2r88 ENSMUST00000232797 ENSMUSP00000156867 TRANSLATION protein_coding - - - 511.0 0.0 1.04 0.0 120.5 0.0 1,-3 0.0016 - 2.298 MINOR ENSMUSG00000000606 Vmn2r88 ENSMUST00000233394 ENSMUSP00000156456 TRANSLATION protein_coding - - - 849.0 4.0 2.718 0.4 387.5 12.0 1,-3 0.804 - 12.0 ALTERNATIVE:2 ENSMUSG00000000606 Vmn2r88 ENSMUST00000233280 ENSMUSP00000156423 TRANSLATION protein_coding - - - 850.0 4.0 2.718 0.4 387.5 12.0 1,-3 0.8147 - 12.0 PRINCIPAL:4 ENSMUSG00000000606 Vmn2r88 ENSMUST00000233126 ENSMUSP00000156772 TRANSLATION protein_coding - - - 512.0 0.0 1.04 0.0 120.5 0.0 1,-3 0.0016 - 2.298 MINOR ENSMUSG00000000606 Vmn2r88 ENSMUST00000159674 ENSMUSP00000125126 TRANSLATION protein_coding - - 1 848.0 4.0 2.52 0.4 388.0 12.0 1,-3 0.4911 - 11.562 ALTERNATIVE:2 ENSMUSG00000000606 Vmn2r88 ENSMUST00000233651 ENSMUSP00000156606 TRANSLATION protein_coding - - - 437.0 0.0 0.72 0.1 117.8 0.0 1,-3 0.0016 - 1.59 MINOR ENSMUSG00000000606 Vmn2r88 ENSMUST00000233848 ENSMUSP00000156397 TRANSLATION protein_coding - - - 848.0 4.0 2.52 0.4 388.0 12.0 1,-3 0.4911 - 11.562 ALTERNATIVE:2 ENSMUSG00000000606 Vmn2r88 ENSMUST00000233766 ENSMUSP00000156821 TRANSLATION protein_coding - - - 436.0 0.0 0.72 0.1 117.8 0.0 1,-3 0.0016 - 1.59 MINOR ENSMUSG00000000606 Vmn2r88 ENSMUST00000163019 ENSMUSP00000124837 TRANSLATION protein_coding - - 1 437.0 0.0 0.72 0.1 117.8 0.0 1,-3 0.0016 - 1.59 MINOR ENSMUSG00000000606 Vmn2r88 ENSMUST00000232951 ENSMUSP00000156671 TRANSLATION protein_coding - - - 773.0 4.0 2.2 0.4 385.3 12.0 1,-3 0.1014 - 10.854 MINOR ENSMUSG00000000606 Vmn2r88 ENSMUST00000233920 ENSMUSP00000156955 TRANSLATION protein_coding - - - 774.0 4.0 2.398 0.4 382.8 12.0 1,-3 0.0968 - 11.292 ALTERNATIVE:2 ENSMUSG00000075486 Commd6 ENSMUST00000100339 ENSMUSP00000097912 TRANSLATION protein_coding - CCDS37000.1 1 87.0 0.0 1.5 3.8 61.5 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000075486 Commd6 ENSMUST00000131022 - NO_TRANSLATION retained_intron ENSMUSG00000075486 Commd6 ENSMUST00000168587 ENSMUSP00000131634 TRANSLATION protein_coding - CCDS49557.1 1 83.0 0.0 1.5 3.8 59.9 0.0 -4,-5 0.5508 3 9.0 ALTERNATIVE:2 ENSMUSG00000075486 Commd6 ENSMUST00000227868 - NO_TRANSLATION retained_intron ENSMUSG00000053205 Styx ENSMUST00000228818 ENSMUSP00000154485 TRANSLATION protein_coding stop - - 66.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053205 Styx ENSMUST00000111835 ENSMUSP00000107466 TRANSLATION nonsense_mediated_decay - - 1 205.0 8.0 5.16 0.0 127.0 0.0 -4,-5 0.0032 3 -2.0 MINOR ENSMUSG00000053205 Styx ENSMUST00000228321 - NO_TRANSLATION retained_intron ENSMUSG00000053205 Styx ENSMUST00000226873 ENSMUSP00000153854 TRANSLATION protein_coding - CCDS26975.1 - 223.0 8.0 6.08 33.0 130.7 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000053205 Styx ENSMUST00000226785 ENSMUSP00000154662 TRANSLATION nonsense_mediated_decay - - - 55.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053205 Styx ENSMUST00000227538 - NO_TRANSLATION retained_intron ENSMUSG00000053205 Styx ENSMUST00000226303 ENSMUSP00000154228 TRANSLATION nonsense_mediated_decay - - - 52.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053205 Styx ENSMUST00000226603 ENSMUSP00000154323 TRANSLATION nonsense_mediated_decay - - - 115.0 0.0 3.33 0.0 34.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053205 Styx ENSMUST00000228311 ENSMUSP00000154148 TRANSLATION nonsense_mediated_decay - CCDS26975.1 - 223.0 8.0 6.08 33.0 130.7 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000022110 Sucla2 ENSMUST00000162723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022110 Sucla2 ENSMUST00000160507 ENSMUSP00000123765 TRANSLATION protein_coding - CCDS27271.1 1 463.0 23.0 9.65 23.1 348.9 0.0 -4,0 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000022110 Sucla2 ENSMUST00000162691 ENSMUSP00000123898 TRANSLATION protein_coding stop - 3 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0211 - -2.0 MINOR ENSMUSG00000022110 Sucla2 ENSMUST00000022706 ENSMUSP00000022706 TRANSLATION protein_coding - CCDS27271.1 1 463.0 23.0 9.65 23.1 348.9 0.0 -4,0 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000022110 Sucla2 ENSMUST00000161082 - NO_TRANSLATION retained_intron ENSMUSG00000022110 Sucla2 ENSMUST00000159165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022110 Sucla2 ENSMUST00000161829 - NO_TRANSLATION retained_intron ENSMUSG00000025278 Flnb ENSMUST00000052678 ENSMUSP00000052020 TRANSLATION protein_coding - CCDS70540.1 5 2602.0 0.0 38.0 9.3 1342.9 0.0 -4,-5 1.0 102 15.0 PRINCIPAL:1 ENSMUSG00000025278 Flnb ENSMUST00000228206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096541 Trav9n-3 ENSMUST00000177705 ENSMUSP00000136185 TRANSLATION TR_V_gene stop - - 113.0 0.0 1.0 0.0 52.8 0.0 3,-1 0.8257 - -2.0 PRINCIPAL:1 ENSMUSG00000076840 Trav14-1 ENSMUST00000198297 ENSMUSP00000143077 TRANSLATION TR_V_gene stop - - 121.0 0.0 1.1 0.0 58.7 0.0 3,-1 0.8221 - -2.0 PRINCIPAL:1 ENSMUSG00000021991 Cacna2d3 ENSMUST00000225863 ENSMUSP00000153444 TRANSLATION nonsense_mediated_decay - - - 134.0 1.0 1.9 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000021991 Cacna2d3 ENSMUST00000224950 - NO_TRANSLATION retained_intron ENSMUSG00000021991 Cacna2d3 ENSMUST00000225953 - NO_TRANSLATION retained_intron ENSMUSG00000021991 Cacna2d3 ENSMUST00000225733 ENSMUSP00000153143 TRANSLATION non_stop_decay stop - - 359.0 1.0 4.0015 0.0 32.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000021991 Cacna2d3 ENSMUST00000225668 ENSMUSP00000153037 TRANSLATION nonsense_mediated_decay - - - 100.0 0.0 0.375 0.0 25.1 0.0 -2,-3 0.0 1 -2.0 MINOR ENSMUSG00000021991 Cacna2d3 ENSMUST00000225985 ENSMUSP00000152967 TRANSLATION protein_coding - - - 264.0 0.0 0.707 0.0 70.0 0.0 -2,-3 0.0 3 0.0 MINOR ENSMUSG00000021991 Cacna2d3 ENSMUST00000224128 - NO_TRANSLATION retained_intron ENSMUSG00000021991 Cacna2d3 ENSMUST00000226048 - NO_TRANSLATION retained_intron ENSMUSG00000021991 Cacna2d3 ENSMUST00000022567 ENSMUSP00000022567 TRANSLATION protein_coding - - 1 1091.0 3.0 8.3205 5.7 305.8 0.0 0,-2 1.0 25 17.0 PRINCIPAL:1 ENSMUSG00000021840 Mapk1ip1l ENSMUST00000227554 ENSMUSP00000154689 TRANSLATION protein_coding stop - - 139.0 0.0 0.0 0.0 186.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000021840 Mapk1ip1l ENSMUST00000164235 ENSMUSP00000132875 TRANSLATION protein_coding - CCDS49469.1 1 242.0 0.0 0.0 6.7 331.9 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000021840 Mapk1ip1l ENSMUST00000227941 - NO_TRANSLATION retained_intron ENSMUSG00000021840 Mapk1ip1l ENSMUST00000228058 ENSMUSP00000154193 TRANSLATION protein_coding start - - 153.0 0.0 0.6 0.0 73.8 0.0 -4,-7 0.0197 1 -2.0 MINOR ENSMUSG00000021840 Mapk1ip1l ENSMUST00000166743 ENSMUSP00000127475 TRANSLATION protein_coding - CCDS49469.1 1 242.0 0.0 0.0 6.7 331.9 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000076902 Traj27 ENSMUST00000103714 ENSMUSP00000143220 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000096023 Gm3542 ENSMUST00000169362 ENSMUSP00000127565 TRANSLATION protein_coding - - 5 270.0 0.0 4.0 0.0 80.1 0.0 -4,-5 0.7383 - 12.0 PRINCIPAL:1 ENSMUSG00000063060 Sox7 ENSMUST00000079652 ENSMUSP00000078597 TRANSLATION protein_coding - CCDS27206.1 1 380.0 0.0 0.8 6.2 154.5 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000050028 Or11h6 ENSMUST00000062534 ENSMUSP00000050184 TRANSLATION protein_coding - CCDS27020.1 - 328.0 0.0 1.0 5.7 181.8 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050028 Or11h6 ENSMUST00000216105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050028 Or11h6 ENSMUST00000213127 ENSMUSP00000153971 TRANSLATION protein_coding - - 5 322.0 0.0 1.0 0.0 181.8 6.0 -4,-7 0.1321 - 12.0 MINOR ENSMUSG00000108841 Frmpd2 ENSMUST00000208380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000108841 Frmpd2 ENSMUST00000207581 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000108841 Frmpd2 ENSMUST00000208577 ENSMUSP00000146693 TRANSLATION protein_coding - - 5 1392.0 0.0 12.08 0.0 339.7 0.0 -2,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000108841 Frmpd2 ENSMUST00000208853 ENSMUSP00000146522 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000042567 Nek10 ENSMUST00000134866 - NO_TRANSLATION retained_intron ENSMUSG00000042567 Nek10 ENSMUST00000063220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042567 Nek10 ENSMUST00000112630 ENSMUSP00000108249 TRANSLATION protein_coding - CCDS56937.1 5 1115.0 20.0 4.41 12.3 200.6 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000042567 Nek10 ENSMUST00000112631 ENSMUSP00000108250 TRANSLATION protein_coding - - 5 1111.0 20.0 4.41 0.0 200.6 0.0 -4,-5 0.2778 - 18.0 MINOR ENSMUSG00000042567 Nek10 ENSMUST00000136826 ENSMUSP00000123151 TRANSLATION nonsense_mediated_decay start - 5 279.0 0.0 1.41 0.0 43.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042567 Nek10 ENSMUST00000224491 ENSMUSP00000153142 TRANSLATION protein_coding - CCDS56937.1 - 1115.0 20.0 4.41 12.3 200.6 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000076910 Traj19 ENSMUST00000103722 ENSMUSP00000142545 TRANSLATION TR_J_gene start/stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000021978 Extl3 ENSMUST00000223989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021978 Extl3 ENSMUST00000022550 ENSMUSP00000022550 TRANSLATION protein_coding - CCDS27211.1 5 919.0 11.0 1.8 27.9 536.2 1.0 -4,-2 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000021978 Extl3 ENSMUST00000225633 ENSMUSP00000153547 TRANSLATION protein_coding - CCDS27211.1 - 919.0 11.0 1.8 27.9 536.2 1.0 -4,-2 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000091494 Gm3269 ENSMUST00000166025 ENSMUSP00000132121 TRANSLATION protein_coding - - 5 263.0 0.0 4.0 0.0 65.5 0.0 -4,-5 0.7346 - 12.0 PRINCIPAL:1 ENSMUSG00000021969 Zdhhc20 ENSMUST00000224133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021969 Zdhhc20 ENSMUST00000226057 ENSMUSP00000153568 TRANSLATION protein_coding - - - 380.0 5.0 7.894 8.4 136.7 4.0 -1,-5 0.6128 3 18.926 MINOR ENSMUSG00000021969 Zdhhc20 ENSMUST00000089473 ENSMUSP00000086900 TRANSLATION protein_coding - CCDS27162.1 1 368.0 5.0 7.644 15.5 138.6 4.0 -1,-5 1.0 3 20.502 PRINCIPAL:1 ENSMUSG00000021969 Zdhhc20 ENSMUST00000225955 - NO_TRANSLATION retained_intron ENSMUSG00000021969 Zdhhc20 ENSMUST00000226029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057903 Or11g24 ENSMUST00000075261 ENSMUSP00000074740 TRANSLATION protein_coding - CCDS27015.1 - 309.0 0.0 1.0 5.1 179.0 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000057903 Or11g24 ENSMUST00000216949 ENSMUSP00000150559 TRANSLATION protein_coding - CCDS27015.1 5 309.0 0.0 1.0 5.1 179.0 5.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000021804 Rgr ENSMUST00000225634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021804 Rgr ENSMUST00000225229 ENSMUSP00000153565 TRANSLATION nonsense_mediated_decay - - - 89.0 0.0 0.75 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000021804 Rgr ENSMUST00000225070 ENSMUSP00000153012 TRANSLATION protein_coding - - - 261.0 0.0 7.03 0.0 79.4 10.0 -3,-4 0.0231 - 10.398 MINOR ENSMUSG00000021804 Rgr ENSMUST00000224506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000021804 Rgr ENSMUST00000022338 ENSMUSP00000022338 TRANSLATION protein_coding - CCDS26949.1 1 291.0 0.0 7.83 22.8 79.4 10.0 -3,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000021804 Rgr ENSMUST00000225403 ENSMUSP00000153006 TRANSLATION nonsense_mediated_decay - - - 112.0 0.0 2.4 0.0 25.8 3.0 -3,-4 0.0003 - -2.0 MINOR ENSMUSG00000076885 Traj45 ENSMUST00000103697 ENSMUSP00000143118 TRANSLATION TR_J_gene start/stop - - 21.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.6805 - -2.0 PRINCIPAL:1 ENSMUSG00000063867 Or10g1b ENSMUST00000214168 ENSMUSP00000149479 TRANSLATION protein_coding - CCDS27057.1 5 318.0 0.0 0.8 9.0 169.0 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063867 Or10g1b ENSMUST00000078171 ENSMUSP00000077302 TRANSLATION protein_coding - CCDS27057.1 - 318.0 0.0 0.8 9.0 169.0 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095426 Trav6d-5 ENSMUST00000180687 ENSMUSP00000137877 TRANSLATION TR_V_gene stop - - 112.0 0.0 1.25 0.0 49.5 0.0 1,-2 0.8258 - -2.0 PRINCIPAL:1 ENSMUSG00000045655 Fam216b ENSMUST00000173826 ENSMUSP00000134482 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000045655 Fam216b ENSMUST00000118785 ENSMUSP00000113562 TRANSLATION protein_coding - - 5 97.0 0.0 1.35 0.0 77.2 0.0 -4,-7 0.0 - 5.592 MINOR ENSMUSG00000045655 Fam216b ENSMUST00000066437 ENSMUSP00000064524 TRANSLATION protein_coding - CCDS27293.1 1 138.0 0.0 2.45 0.0 139.1 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025551 Fgf14 ENSMUST00000026631 ENSMUSP00000026631 TRANSLATION protein_coding - CCDS27356.1 1 247.0 9.0 3.6 33.2 138.5 0.0 -4,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000025551 Fgf14 ENSMUST00000095529 ENSMUSP00000093185 TRANSLATION protein_coding - CCDS27355.1 1 252.0 9.0 3.6 21.0 138.5 0.0 -4,-2 0.9441 - 20.484 MINOR ENSMUSG00000114797 Gm49336 ENSMUST00000041905 ENSMUSP00000038716 TRANSLATION protein_coding - CCDS27175.1 1 587.0 0.0 4.85 8.3 984.1 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000114797 Gm49336 ENSMUST00000223713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000114797 Gm49336 ENSMUST00000225311 ENSMUSP00000153117 TRANSLATION protein_coding - - - 558.0 0.0 4.85 1.1 872.3 0.0 -4,-7 0.1606 5 6.042 MINOR ENSMUSG00000114797 Gm49336 ENSMUST00000223596 - NO_TRANSLATION retained_intron ENSMUSG00000114797 Gm49336 ENSMUST00000224575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000114797 Gm49336 ENSMUST00000225572 - NO_TRANSLATION retained_intron ENSMUSG00000114797 Gm49336 ENSMUST00000225111 ENSMUSP00000153625 TRANSLATION protein_coding - - - 537.0 0.0 4.85 0.0 870.7 0.0 -4,-7 0.0974 5 6.0 MINOR ENSMUSG00000095126 Trav6-7-dv9 ENSMUST00000103638 ENSMUSP00000100415 TRANSLATION TR_V_gene stop - - 125.0 0.0 1.0 0.0 43.8 0.0 0,-4 0.782 - -2.0 PRINCIPAL:1 ENSMUSG00000079186 Gzmc ENSMUST00000015585 ENSMUSP00000015585 TRANSLATION protein_coding - CCDS27146.1 1 248.0 7.0 4.0 4.6 201.3 0.0 3,-2 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000076758 Trav1 ENSMUST00000103567 ENSMUSP00000100344 TRANSLATION TR_V_gene stop - - 110.0 0.0 1.1 0.0 44.4 0.0 4,-1 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000048080 Or4k6 ENSMUST00000213322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048080 Or4k6 ENSMUST00000059565 ENSMUSP00000050705 TRANSLATION protein_coding - CCDS27007.1 - 326.0 0.0 1.0 0.4 169.5 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048080 Or4k6 ENSMUST00000214388 ENSMUSP00000150683 TRANSLATION protein_coding - CCDS27007.1 5 326.0 0.0 1.0 0.4 169.5 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048080 Or4k6 ENSMUST00000214152 ENSMUSP00000149395 TRANSLATION protein_coding - CCDS27007.1 5 326.0 0.0 1.0 0.4 169.5 6.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000000958 Slc7a7 ENSMUST00000000984 ENSMUSP00000000984 TRANSLATION protein_coding - CCDS27087.1 1 510.0 0.0 10.38 11.1 90.2 16.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000000958 Slc7a7 ENSMUST00000227334 ENSMUSP00000154208 TRANSLATION protein_coding stop - - 156.0 0.0 1.8 0.0 0.0 7.0 -4,-5 0.0023 - -2.0 MINOR ENSMUSG00000000958 Slc7a7 ENSMUST00000197667 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000958 Slc7a7 ENSMUST00000200545 ENSMUSP00000142587 TRANSLATION protein_coding stop - 3 186.0 0.0 2.63 0.0 0.0 9.0 -4,-5 0.0023 - -2.0 MINOR ENSMUSG00000000958 Slc7a7 ENSMUST00000197440 ENSMUSP00000143743 TRANSLATION protein_coding - CCDS27087.1 1 510.0 0.0 10.38 11.1 90.2 16.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000000958 Slc7a7 ENSMUST00000195970 ENSMUSP00000143091 TRANSLATION protein_coding - CCDS27087.1 5 510.0 0.0 10.38 11.1 90.2 16.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000000958 Slc7a7 ENSMUST00000196215 ENSMUSP00000142710 TRANSLATION protein_coding stop - 3 59.0 0.0 0.8 0.0 0.0 3.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000000958 Slc7a7 ENSMUST00000195999 ENSMUSP00000142826 TRANSLATION protein_coding stop - 2 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000958 Slc7a7 ENSMUST00000228488 ENSMUSP00000154352 TRANSLATION protein_coding stop - - 209.0 0.0 3.38 0.0 35.7 10.0 -4,-5 0.0021 - -2.0 MINOR ENSMUSG00000000958 Slc7a7 ENSMUST00000227967 ENSMUSP00000153917 TRANSLATION protein_coding stop - - 167.0 0.0 2.13 0.0 0.0 7.0 -4,-5 0.0023 - -2.0 MINOR ENSMUSG00000000958 Slc7a7 ENSMUST00000226753 ENSMUSP00000154533 TRANSLATION protein_coding - CCDS27087.1 - 510.0 0.0 10.38 11.1 90.2 16.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000000958 Slc7a7 ENSMUST00000196966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033111 Cep15 ENSMUST00000224389 ENSMUSP00000153430 TRANSLATION protein_coding - CCDS26817.1 - 127.0 0.0 3.33 3.5 152.0 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000033111 Cep15 ENSMUST00000225971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033111 Cep15 ENSMUST00000225294 ENSMUSP00000153402 TRANSLATION protein_coding - CCDS26817.1 - 127.0 0.0 3.33 3.5 152.0 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000033111 Cep15 ENSMUST00000225640 ENSMUSP00000153272 TRANSLATION protein_coding stop - - 55.0 0.0 1.5 0.0 68.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033111 Cep15 ENSMUST00000223697 - NO_TRANSLATION retained_intron ENSMUSG00000033111 Cep15 ENSMUST00000225383 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033111 Cep15 ENSMUST00000224824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033111 Cep15 ENSMUST00000225052 - NO_TRANSLATION retained_intron ENSMUSG00000033111 Cep15 ENSMUST00000223631 ENSMUSP00000153352 TRANSLATION protein_coding - CCDS36805.1 - 90.0 0.0 2.33 0.0 100.4 0.0 -4,-5 0.0009 1 6.906 MINOR ENSMUSG00000033111 Cep15 ENSMUST00000223927 ENSMUSP00000153588 TRANSLATION protein_coding - CCDS36805.1 - 90.0 0.0 2.33 0.0 100.4 0.0 -4,-5 0.0009 1 6.906 MINOR ENSMUSG00000033111 Cep15 ENSMUST00000224223 - NO_TRANSLATION retained_intron ENSMUSG00000033111 Cep15 ENSMUST00000224994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033111 Cep15 ENSMUST00000225847 ENSMUSP00000153505 TRANSLATION protein_coding start - - 89.0 0.0 1.83 0.0 68.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033111 Cep15 ENSMUST00000112669 ENSMUSP00000108288 TRANSLATION protein_coding - CCDS36805.1 1 90.0 0.0 2.33 0.0 100.4 0.0 -4,-5 0.0009 1 6.906 MINOR ENSMUSG00000033111 Cep15 ENSMUST00000223702 ENSMUSP00000153330 TRANSLATION protein_coding - - - 135.0 0.0 2.83 0.0 116.2 0.0 -4,0 0.0005 1 8.85 MINOR ENSMUSG00000033111 Cep15 ENSMUST00000223762 ENSMUSP00000153287 TRANSLATION protein_coding - CCDS26817.1 - 127.0 0.0 3.33 3.5 152.0 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000033111 Cep15 ENSMUST00000225739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033111 Cep15 ENSMUST00000163392 ENSMUSP00000126960 TRANSLATION protein_coding - CCDS26817.1 1 127.0 0.0 3.33 3.5 152.0 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000033111 Cep15 ENSMUST00000225773 ENSMUSP00000153288 TRANSLATION protein_coding - - - 109.0 0.0 2.83 0.0 69.7 0.0 -4,-6 0.0062 1 6.06 MINOR ENSMUSG00000033595 Lgi3 ENSMUST00000226376 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033595 Lgi3 ENSMUST00000047331 ENSMUSP00000046705 TRANSLATION protein_coding - CCDS27255.1 1 548.0 0.0 6.8 9.1 291.3 0.0 4,-3 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000033595 Lgi3 ENSMUST00000226548 ENSMUSP00000153920 TRANSLATION protein_coding - - - 165.0 0.0 3.8 0.0 43.0 0.0 4,-3 0.0 3 0.0 MINOR ENSMUSG00000033487 Fndc3a ENSMUST00000161550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033487 Fndc3a ENSMUST00000162478 ENSMUSP00000124637 TRANSLATION protein_coding stop - 5 540.0 0.0 6.5 0.0 92.9 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000033487 Fndc3a ENSMUST00000162922 - NO_TRANSLATION retained_intron ENSMUSG00000033487 Fndc3a ENSMUST00000162825 ENSMUSP00000124218 TRANSLATION protein_coding start - 5 1154.0 0.0 15.03 0.0 248.8 1.0 -4,-7 0.1954 22 -2.0 MINOR ENSMUSG00000033487 Fndc3a ENSMUST00000089017 ENSMUSP00000086411 TRANSLATION protein_coding - CCDS27264.1 1 1198.0 0.0 15.03 12.5 248.8 1.0 -4,-6 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000033487 Fndc3a ENSMUST00000163013 - NO_TRANSLATION retained_intron ENSMUSG00000033487 Fndc3a ENSMUST00000159144 - NO_TRANSLATION retained_intron ENSMUSG00000042888 Prr30 ENSMUST00000187304 ENSMUSP00000139590 TRANSLATION protein_coding - CCDS36999.1 5 401.0 0.0 0.5 0.1 605.3 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000042888 Prr30 ENSMUST00000057718 ENSMUSP00000060206 TRANSLATION protein_coding - CCDS36999.1 3 401.0 0.0 0.5 0.1 605.3 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000033470 Cysltr2 ENSMUST00000228154 - NO_TRANSLATION retained_intron ENSMUSG00000033470 Cysltr2 ENSMUST00000226727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033470 Cysltr2 ENSMUST00000228821 - NO_TRANSLATION retained_intron ENSMUSG00000033470 Cysltr2 ENSMUST00000169168 ENSMUSP00000125958 TRANSLATION protein_coding - CCDS27265.1 1 309.0 0.0 0.8 0.1 144.7 7.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033470 Cysltr2 ENSMUST00000044664 ENSMUSP00000040715 TRANSLATION protein_coding - CCDS27265.1 1 309.0 0.0 0.8 0.1 144.7 7.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000021999 Cpb2 ENSMUST00000227817 - NO_TRANSLATION retained_intron ENSMUSG00000021999 Cpb2 ENSMUST00000022576 ENSMUSP00000022576 TRANSLATION protein_coding - CCDS27277.1 1 422.0 8.0 9.75 11.8 359.8 0.0 0,-3 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000034463 Scara3 ENSMUST00000042046 ENSMUSP00000046525 TRANSLATION protein_coding - CCDS49524.1 1 606.0 0.0 0.0 2.8 74.3 0.0 -4,-7 1.0 8 7.0 PRINCIPAL:1 ENSMUSG00000104876 Trdc ENSMUST00000196323 ENSMUSP00000142908 TRANSLATION TR_C_gene start - - 153.0 0.0 1.0 0.0 26.6 0.0 -4,-6 0.7638 2 -2.0 PRINCIPAL:1 ENSMUSG00000044551 9930012K11Rik ENSMUST00000153871 ENSMUSP00000122309 TRANSLATION protein_coding - CCDS49535.1 1 365.0 0.0 0.0 0.1 456.7 0.0 -4,-2 0.5237 1 2.0 ALTERNATIVE:2 ENSMUSG00000044551 9930012K11Rik ENSMUST00000058240 ENSMUSP00000061834 TRANSLATION protein_coding - CCDS36967.1 1 366.0 0.0 0.0 0.1 463.1 0.0 -4,-2 1.0 1 2.0 PRINCIPAL:2 ENSMUSG00000044551 9930012K11Rik ENSMUST00000140314 - NO_TRANSLATION retained_intron ENSMUSG00000044551 9930012K11Rik ENSMUST00000129767 ENSMUSP00000121604 TRANSLATION nonsense_mediated_decay start - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044551 9930012K11Rik ENSMUST00000140152 - NO_TRANSLATION retained_intron ENSMUSG00000095765 Or11g25 ENSMUST00000213903 ENSMUSP00000151020 TRANSLATION protein_coding - CCDS27017.1 5 311.0 0.0 1.0 10.4 187.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095765 Or11g25 ENSMUST00000205518 ENSMUSP00000145848 TRANSLATION protein_coding - CCDS27017.1 2 311.0 0.0 1.0 10.4 187.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095765 Or11g25 ENSMUST00000071932 ENSMUSP00000071824 TRANSLATION protein_coding - CCDS27017.1 - 311.0 0.0 1.0 10.4 187.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022124 Fbxl3 ENSMUST00000022720 ENSMUSP00000022720 TRANSLATION protein_coding - CCDS27315.1 1 428.0 0.0 5.63 24.7 32.7 0.0 -4,-5 1.0 2 15.67 PRINCIPAL:1 ENSMUSG00000022124 Fbxl3 ENSMUST00000226952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022124 Fbxl3 ENSMUST00000132004 ENSMUSP00000115843 TRANSLATION protein_coding - CCDS84159.1 1 380.0 0.0 4.63 1.0 27.0 0.0 -4,-5 0.0198 1 8.682 MINOR ENSMUSG00000022124 Fbxl3 ENSMUST00000123043 ENSMUSP00000117701 TRANSLATION protein_coding stop - 5 116.0 0.0 2.13 0.0 29.6 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000022124 Fbxl3 ENSMUST00000127113 - NO_TRANSLATION retained_intron ENSMUSG00000022124 Fbxl3 ENSMUST00000145693 ENSMUSP00000116044 TRANSLATION protein_coding - CCDS27315.1 1 428.0 0.0 5.63 24.7 32.7 0.0 -4,-5 1.0 2 15.67 PRINCIPAL:1 ENSMUSG00000022124 Fbxl3 ENSMUST00000144141 ENSMUSP00000120691 TRANSLATION protein_coding stop - 3 177.0 0.0 3.63 0.0 34.6 0.0 -4,-5 0.0014 1 -2.0 MINOR ENSMUSG00000023064 Sncg ENSMUST00000023826 ENSMUSP00000023826 TRANSLATION protein_coding - CCDS26937.1 1 123.0 0.0 2.599 7.8 185.3 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000072598 Ang6 ENSMUST00000160223 ENSMUSP00000159552 TRANSLATION protein_coding - CCDS36889.1 5 147.0 5.0 1.0 5.7 112.0 0.0 4,-1 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000076925 Traj3 ENSMUST00000103737 ENSMUSP00000143132 TRANSLATION TR_J_gene start/stop - - 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000004558 Ndrg2 ENSMUST00000004673 ENSMUSP00000004673 TRANSLATION protein_coding - CCDS27047.1 1 371.0 0.0 8.66 11.8 407.5 0.0 -4,-5 0.9549 15 10.868 PRINCIPAL:3 ENSMUSG00000004558 Ndrg2 ENSMUST00000227237 ENSMUSP00000153938 TRANSLATION protein_coding stop - - 273.0 0.0 7.66 0.0 354.2 0.0 -4,-5 0.002 9 -2.0 MINOR ENSMUSG00000004558 Ndrg2 ENSMUST00000228620 - NO_TRANSLATION retained_intron ENSMUSG00000004558 Ndrg2 ENSMUST00000228173 - NO_TRANSLATION retained_intron ENSMUSG00000004558 Ndrg2 ENSMUST00000226528 ENSMUSP00000154716 TRANSLATION protein_coding stop - - 114.0 0.0 2.5 0.0 129.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000004558 Ndrg2 ENSMUST00000226364 - NO_TRANSLATION retained_intron ENSMUSG00000004558 Ndrg2 ENSMUST00000227402 ENSMUSP00000154279 TRANSLATION protein_coding stop - - 238.0 0.0 6.16 0.0 287.3 0.0 -4,-5 0.0007 7 -2.0 MINOR ENSMUSG00000004558 Ndrg2 ENSMUST00000226698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004558 Ndrg2 ENSMUST00000226122 - NO_TRANSLATION retained_intron ENSMUSG00000004558 Ndrg2 ENSMUST00000111632 ENSMUSP00000107259 TRANSLATION protein_coding - CCDS49486.1 1 357.0 0.0 8.66 12.3 407.5 0.0 -4,-5 1.0 14 11.0 ALTERNATIVE:1 ENSMUSG00000004558 Ndrg2 ENSMUST00000226366 - NO_TRANSLATION retained_intron ENSMUSG00000004558 Ndrg2 ENSMUST00000226184 ENSMUSP00000154135 TRANSLATION protein_coding stop - - 114.0 0.0 2.0 0.0 103.8 0.0 -4,-5 0.0003 5 -2.0 MINOR ENSMUSG00000004558 Ndrg2 ENSMUST00000228164 ENSMUSP00000153830 TRANSLATION protein_coding stop - - 176.0 0.0 4.33 0.0 234.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000041625 Ggact ENSMUST00000110679 ENSMUSP00000135487 TRANSLATION protein_coding - - 1 79.0 6.0 1.0 0.0 38.8 0.0 -4,-2 0.0 2 8.736 MINOR ENSMUSG00000041625 Ggact ENSMUST00000038075 ENSMUSP00000037278 TRANSLATION protein_coding - CCDS27351.1 1 149.0 8.0 3.25 15.5 85.1 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000041625 Ggact ENSMUST00000162164 ENSMUSP00000123721 TRANSLATION protein_coding stop - 2 105.0 8.0 2.0 0.0 80.2 0.0 -4,-2 0.0064 3 -2.0 MINOR ENSMUSG00000041625 Ggact ENSMUST00000160401 ENSMUSP00000124954 TRANSLATION protein_coding stop - 3 121.0 8.0 2.5 0.0 84.8 0.0 -4,-2 0.0096 3 -2.0 MINOR ENSMUSG00000041625 Ggact ENSMUST00000227890 - NO_TRANSLATION retained_intron ENSMUSG00000041625 Ggact ENSMUST00000161322 ENSMUSP00000135481 TRANSLATION protein_coding - - 2 68.0 6.0 1.0 0.0 35.3 0.0 -4,-2 0.0 2 8.49 MINOR ENSMUSG00000037722 Gnpnat1 ENSMUST00000227468 ENSMUSP00000154084 TRANSLATION protein_coding - CCDS26976.1 - 184.0 24.0 4.49 23.7 40.5 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000037722 Gnpnat1 ENSMUST00000227865 ENSMUSP00000154777 TRANSLATION protein_coding stop - - 119.0 3.0 2.99 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037722 Gnpnat1 ENSMUST00000228003 ENSMUSP00000154780 TRANSLATION protein_coding stop - - 63.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037722 Gnpnat1 ENSMUST00000228304 ENSMUSP00000154299 TRANSLATION protein_coding stop - - 107.0 0.0 2.66 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037722 Gnpnat1 ENSMUST00000226973 - NO_TRANSLATION retained_intron ENSMUSG00000037722 Gnpnat1 ENSMUST00000226590 ENSMUSP00000154025 TRANSLATION protein_coding stop - - 51.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037722 Gnpnat1 ENSMUST00000226276 ENSMUSP00000154382 TRANSLATION protein_coding - - - 206.0 24.0 3.74 0.0 39.7 0.0 -4,-5 0.0086 4 16.38 MINOR ENSMUSG00000037722 Gnpnat1 ENSMUST00000228451 ENSMUSP00000154138 TRANSLATION protein_coding start - - 135.0 24.0 3.16 0.0 38.7 0.0 -4,-5 0.0047 3 -2.0 MINOR ENSMUSG00000037722 Gnpnat1 ENSMUST00000046191 ENSMUSP00000042860 TRANSLATION protein_coding - CCDS26976.1 1 184.0 24.0 4.49 23.7 40.5 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000037722 Gnpnat1 ENSMUST00000226856 ENSMUSP00000154590 TRANSLATION protein_coding stop - - 112.0 3.0 2.66 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000090363 Gm3512 ENSMUST00000172431 ENSMUSP00000127813 TRANSLATION protein_coding - - 5 133.0 0.0 2.75 0.0 54.9 0.0 -4,-5 0.7379 - 12.0 PRINCIPAL:1 ENSMUSG00000091617 Gm3752 ENSMUST00000249474 ENSMUSP00000159769 TRANSLATION protein_coding - - - 150.0 0.0 3.0 0.0 68.5 0.0 -4,-5 0.7361 - 12.0 PRINCIPAL:1 ENSMUSG00000091617 Gm3752 ENSMUST00000249473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091617 Gm3752 ENSMUST00000164366 ENSMUSP00000132286 TRANSLATION protein_coding - - 5 150.0 0.0 3.0 0.0 68.5 0.0 -4,-5 0.7361 - 12.0 PRINCIPAL:1 ENSMUSG00000021997 Lrrc63 ENSMUST00000022574 ENSMUSP00000022574 TRANSLATION protein_coding - CCDS49539.1 1 638.0 0.0 4.15 0.0 37.6 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000092036 Gm2244 ENSMUST00000164372 ENSMUSP00000128646 TRANSLATION protein_coding - - 1 218.0 0.0 3.5 0.0 71.5 0.0 -4,-5 0.7384 - 12.0 PRINCIPAL:1 ENSMUSG00000004562 Arhgef40 ENSMUST00000182338 ENSMUSP00000138482 TRANSLATION nonsense_mediated_decay - - 3 85.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000100639 ENSMUSP00000098204 TRANSLATION protein_coding - CCDS49489.1 1 1476.0 0.0 4.598 0.1 33.9 0.0 -4,-5 0.4725 22 12.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000182061 ENSMUSP00000138128 TRANSLATION protein_coding - CCDS59616.1 1 1469.0 0.0 4.598 3.2 33.9 0.0 -4,-5 0.6288 22 12.903 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000182905 ENSMUSP00000138797 TRANSLATION nonsense_mediated_decay - - 1 1191.0 0.0 2.65 0.0 0.0 0.0 -4,-5 0.0121 12 -2.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000182649 ENSMUSP00000138638 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000182740 - NO_TRANSLATION retained_intron ENSMUSG00000004562 Arhgef40 ENSMUST00000182412 ENSMUSP00000138405 TRANSLATION nonsense_mediated_decay start - 3 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000183213 - NO_TRANSLATION retained_intron ENSMUSG00000004562 Arhgef40 ENSMUST00000182828 ENSMUSP00000138339 TRANSLATION protein_coding start - 3 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000183208 ENSMUSP00000138354 TRANSLATION nonsense_mediated_decay - - 5 500.0 0.0 2.15 0.0 0.0 0.0 -4,-5 0.001 4 -2.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000182760 ENSMUSP00000138125 TRANSLATION protein_coding - - 5 1526.0 0.0 4.598 0.0 33.9 0.0 -4,-5 0.2921 23 12.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000182667 ENSMUSP00000138424 TRANSLATION protein_coding start - 3 179.0 0.0 0.648 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000182217 ENSMUSP00000138568 TRANSLATION protein_coding start - 5 115.0 0.0 0.198 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000182961 - NO_TRANSLATION retained_intron ENSMUSG00000004562 Arhgef40 ENSMUST00000182777 - NO_TRANSLATION retained_intron ENSMUSG00000004562 Arhgef40 ENSMUST00000182644 - NO_TRANSLATION retained_intron ENSMUSG00000004562 Arhgef40 ENSMUST00000182609 - NO_TRANSLATION retained_intron ENSMUSG00000004562 Arhgef40 ENSMUST00000183167 - NO_TRANSLATION retained_intron ENSMUSG00000004562 Arhgef40 ENSMUST00000182193 ENSMUSP00000138751 TRANSLATION protein_coding stop - 5 89.0 0.0 2.15 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000004562 Arhgef40 ENSMUST00000182909 ENSMUSP00000138635 TRANSLATION protein_coding - CCDS49488.1 5 1517.0 0.0 4.598 8.3 33.9 0.0 -4,-5 1.0 23 15.0 PRINCIPAL:1 ENSMUSG00000004562 Arhgef40 ENSMUST00000093813 ENSMUSP00000091331 TRANSLATION protein_coding - CCDS49488.1 1 1517.0 0.0 4.598 8.3 33.9 0.0 -4,-5 1.0 23 15.0 PRINCIPAL:1 ENSMUSG00000004562 Arhgef40 ENSMUST00000182504 - NO_TRANSLATION retained_intron ENSMUSG00000004562 Arhgef40 ENSMUST00000182019 - NO_TRANSLATION retained_intron ENSMUSG00000004562 Arhgef40 ENSMUST00000182931 - NO_TRANSLATION retained_intron ENSMUSG00000004562 Arhgef40 ENSMUST00000182480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004562 Arhgef40 ENSMUST00000183022 - NO_TRANSLATION retained_intron ENSMUSG00000023021 Cers5 ENSMUST00000176970 ENSMUSP00000135723 TRANSLATION protein_coding start - 5 203.0 0.0 5.33 0.0 42.5 12.0 -3,-5 0.0036 1 -2.0 MINOR ENSMUSG00000023021 Cers5 ENSMUST00000176248 ENSMUSP00000135074 TRANSLATION nonsense_mediated_decay - - 5 251.0 0.0 5.8 0.0 106.1 7.0 -1,-4 0.0048 1 -2.0 MINOR ENSMUSG00000023021 Cers5 ENSMUST00000176627 ENSMUSP00000134988 TRANSLATION protein_coding stop - 3 95.0 0.0 2.5 0.0 36.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023021 Cers5 ENSMUST00000109035 ENSMUSP00000104663 TRANSLATION protein_coding - - 1 387.0 0.0 9.13 0.0 170.0 13.0 -1,-4 0.165 2 7.34 ALTERNATIVE:2 ENSMUSG00000023021 Cers5 ENSMUST00000175876 ENSMUSP00000134845 TRANSLATION protein_coding stop - 5 241.0 0.0 6.5 0.0 144.9 10.0 -4,-7 0.0089 2 -2.0 MINOR ENSMUSG00000023021 Cers5 ENSMUST00000023762 ENSMUSP00000023762 TRANSLATION protein_coding - CCDS27830.1 1 414.0 0.0 9.46 0.1 170.0 13.0 -1,-4 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000116121 Gm49486 ENSMUST00000053926 ENSMUSP00000061125 TRANSLATION protein_coding,RT - - 1 530.0 0.0 5.375 0.0 349.1 0.0 -4,-5 0.7735 - -2.0 PRINCIPAL:1 ENSMUSG00000022353 Mtss1 ENSMUST00000080371 ENSMUSP00000079239 TRANSLATION protein_coding - CCDS27496.1 1 759.0 0.0 7.58 12.7 376.1 0.0 -4,-6 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000022353 Mtss1 ENSMUST00000227045 ENSMUSP00000154093 TRANSLATION protein_coding start/stop - - 162.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 7 -2.0 MINOR ENSMUSG00000022353 Mtss1 ENSMUST00000228067 ENSMUSP00000153850 TRANSLATION protein_coding start/stop - - 204.0 0.0 1.83 0.0 51.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022353 Mtss1 ENSMUST00000226923 - NO_TRANSLATION retained_intron ENSMUSG00000022353 Mtss1 ENSMUST00000227290 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022353 Mtss1 ENSMUST00000228655 - NO_TRANSLATION retained_intron ENSMUSG00000022353 Mtss1 ENSMUST00000226976 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022353 Mtss1 ENSMUST00000228365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022353 Mtss1 ENSMUST00000226393 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022353 Mtss1 ENSMUST00000227797 - NO_TRANSLATION retained_intron ENSMUSG00000022353 Mtss1 ENSMUST00000227238 - NO_TRANSLATION retained_intron ENSMUSG00000022353 Mtss1 ENSMUST00000227196 ENSMUSP00000154064 TRANSLATION protein_coding start/stop - - 242.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0007 4 -2.0 MINOR ENSMUSG00000015363 Trabd ENSMUST00000168863 ENSMUSP00000130292 TRANSLATION protein_coding stop - 5 234.0 0.0 0.0 0.0 69.3 0.0 -4,-5 0.0006 7 -2.0 MINOR ENSMUSG00000015363 Trabd ENSMUST00000169870 ENSMUSP00000126600 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015363 Trabd ENSMUST00000170754 - NO_TRANSLATION retained_intron ENSMUSG00000015363 Trabd ENSMUST00000165690 ENSMUSP00000131228 TRANSLATION protein_coding - CCDS49696.1 1 376.0 0.0 0.0 6.5 98.7 1.0 -4,-5 1.0 9 8.0 PRINCIPAL:1 ENSMUSG00000015363 Trabd ENSMUST00000169891 ENSMUSP00000128721 TRANSLATION protein_coding - - 1 320.0 0.0 0.0 0.0 86.9 0.0 -4,-5 0.0105 8 5.28 MINOR ENSMUSG00000015363 Trabd ENSMUST00000163696 - NO_TRANSLATION retained_intron ENSMUSG00000015363 Trabd ENSMUST00000081702 ENSMUSP00000080403 TRANSLATION protein_coding - CCDS49696.1 1 376.0 0.0 0.0 6.5 98.7 1.0 -4,-5 1.0 9 8.0 PRINCIPAL:1 ENSMUSG00000008690 Ncaph2 ENSMUST00000147207 - NO_TRANSLATION retained_intron ENSMUSG00000008690 Ncaph2 ENSMUST00000136638 - NO_TRANSLATION retained_intron ENSMUSG00000008690 Ncaph2 ENSMUST00000123889 - NO_TRANSLATION retained_intron ENSMUSG00000008690 Ncaph2 ENSMUST00000145793 - NO_TRANSLATION retained_intron ENSMUSG00000008690 Ncaph2 ENSMUST00000147733 - NO_TRANSLATION retained_intron ENSMUSG00000008690 Ncaph2 ENSMUST00000145259 ENSMUSP00000122118 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008690 Ncaph2 ENSMUST00000036987 ENSMUSP00000036900 TRANSLATION protein_coding - CCDS70660.1 1 576.0 0.0 0.0 0.3 467.1 0.0 -4,-5 0.1198 6 0.5 MINOR ENSMUSG00000008690 Ncaph2 ENSMUST00000141643 - NO_TRANSLATION retained_intron ENSMUSG00000008690 Ncaph2 ENSMUST00000151523 - NO_TRANSLATION retained_intron ENSMUSG00000008690 Ncaph2 ENSMUST00000074552 ENSMUSP00000074139 TRANSLATION protein_coding - CCDS49700.1 1 607.0 0.0 0.0 0.4 518.3 0.0 -4,-5 0.9336 6 2.0 PRINCIPAL:4 ENSMUSG00000008690 Ncaph2 ENSMUST00000134900 - NO_TRANSLATION retained_intron ENSMUSG00000008690 Ncaph2 ENSMUST00000088717 ENSMUSP00000086095 TRANSLATION protein_coding - CCDS70661.1 1 608.0 0.0 0.0 0.4 520.7 0.0 -4,-5 0.9252 6 2.0 ALTERNATIVE:2 ENSMUSG00000008690 Ncaph2 ENSMUST00000140665 - NO_TRANSLATION retained_intron ENSMUSG00000022148 Fyb ENSMUST00000159604 - NO_TRANSLATION retained_intron ENSMUSG00000022148 Fyb ENSMUST00000162430 - NO_TRANSLATION retained_intron ENSMUSG00000022148 Fyb ENSMUST00000161947 - NO_TRANSLATION retained_intron ENSMUSG00000022148 Fyb ENSMUST00000227175 ENSMUSP00000153970 TRANSLATION protein_coding stop - - 105.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000022148 Fyb ENSMUST00000160612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022148 Fyb ENSMUST00000090461 ENSMUSP00000087947 TRANSLATION protein_coding - CCDS37031.1 1 819.0 0.0 3.53 0.1 183.2 0.0 -4,-6 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000022148 Fyb ENSMUST00000226412 ENSMUSP00000154585 TRANSLATION protein_coding stop - - 125.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022148 Fyb ENSMUST00000159714 - NO_TRANSLATION retained_intron ENSMUSG00000022148 Fyb ENSMUST00000163073 ENSMUSP00000123895 TRANSLATION protein_coding start - 3 183.0 0.0 1.93 0.0 131.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022148 Fyb ENSMUST00000162154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022231 Sema5a ENSMUST00000067458 ENSMUSP00000069024 TRANSLATION protein_coding - CCDS37055.1 1 1074.0 0.0 10.93 17.4 608.9 0.0 1,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000022231 Sema5a ENSMUST00000228442 - NO_TRANSLATION retained_intron ENSMUSG00000022231 Sema5a ENSMUST00000227976 - NO_TRANSLATION retained_intron ENSMUSG00000022231 Sema5a ENSMUST00000226876 - NO_TRANSLATION retained_intron ENSMUSG00000022231 Sema5a ENSMUST00000228555 - NO_TRANSLATION retained_intron ENSMUSG00000022231 Sema5a ENSMUST00000228103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022231 Sema5a ENSMUST00000227429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022231 Sema5a ENSMUST00000228015 - NO_TRANSLATION retained_intron ENSMUSG00000022231 Sema5a ENSMUST00000227802 - NO_TRANSLATION retained_intron ENSMUSG00000001288 Rarg ENSMUST00000043172 ENSMUSP00000048838 TRANSLATION protein_coding - CCDS27875.1 1 458.0 53.0 7.3 6.6 191.4 0.0 -4,-6 0.9392 1 16.4 ALTERNATIVE:1 ENSMUSG00000001288 Rarg ENSMUST00000124224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001288 Rarg ENSMUST00000130204 ENSMUSP00000155670 TRANSLATION protein_coding stop - 1 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0212 - -2.0 MINOR ENSMUSG00000001288 Rarg ENSMUST00000135466 ENSMUSP00000118615 TRANSLATION protein_coding stop - 5 227.0 11.0 3.5 0.0 114.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000001288 Rarg ENSMUST00000230330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001288 Rarg ENSMUST00000063339 ENSMUSP00000067266 TRANSLATION protein_coding - CCDS37226.1 1 447.0 53.0 7.3 8.0 191.4 0.0 -4,-6 1.0 1 17.0 PRINCIPAL:4 ENSMUSG00000001288 Rarg ENSMUST00000155563 ENSMUSP00000155448 TRANSLATION protein_coding stop - 1 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0212 - -2.0 MINOR ENSMUSG00000022629 Kif21a ENSMUST00000230487 ENSMUSP00000154845 TRANSLATION protein_coding start/stop - - 221.0 0.0 4.5 0.0 60.9 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000022629 Kif21a ENSMUST00000109287 ENSMUSP00000104910 TRANSLATION protein_coding - CCDS49706.1 1 1567.0 11.0 14.098 0.0 445.8 0.0 -4,-6 0.3085 40 18.0 MINOR ENSMUSG00000022629 Kif21a ENSMUST00000229801 ENSMUSP00000155710 TRANSLATION protein_coding start/stop - - 250.0 0.0 2.1 0.0 29.7 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022629 Kif21a ENSMUST00000088614 ENSMUSP00000085985 TRANSLATION protein_coding - CCDS49708.1 5 1672.0 11.0 14.098 5.9 445.8 0.0 -4,-6 1.0 41 20.0 PRINCIPAL:1 ENSMUSG00000022629 Kif21a ENSMUST00000067205 ENSMUSP00000066911 TRANSLATION protein_coding - CCDS49707.1 1 1628.0 11.0 14.098 0.0 445.8 0.0 -4,-6 0.3846 41 18.0 MINOR ENSMUSG00000022629 Kif21a ENSMUST00000109288 ENSMUSP00000104911 TRANSLATION protein_coding - CCDS37179.1 1 1573.0 11.0 14.098 0.3 445.8 0.0 -4,-6 0.3674 39 18.0 MINOR ENSMUSG00000046761 Fam83h ENSMUST00000170153 ENSMUSP00000126453 TRANSLATION protein_coding - CCDS27559.1 1 1209.0 0.0 2.0 0.1 340.4 0.0 -4,-7 1.0 22 8.0 PRINCIPAL:2 ENSMUSG00000046761 Fam83h ENSMUST00000060807 ENSMUSP00000059839 TRANSLATION protein_coding - CCDS27559.1 1 1209.0 0.0 2.0 0.1 340.4 0.0 -4,-7 1.0 22 8.0 PRINCIPAL:2 ENSMUSG00000046761 Fam83h ENSMUST00000238313 ENSMUSP00000158845 TRANSLATION protein_coding - - - 1409.0 0.0 2.0 0.0 340.4 0.0 -4,-7 0.2958 23 8.0 ALTERNATIVE:2 ENSMUSG00000075590 Nrbp2 ENSMUST00000019516 ENSMUSP00000019516 TRANSLATION protein_coding - CCDS27561.1 1 258.0 0.0 0.76 2.0 0.0 0.0 -4,-6 0.3093 5 0.588 MINOR ENSMUSG00000075590 Nrbp2 ENSMUST00000228022 - NO_TRANSLATION retained_intron ENSMUSG00000075590 Nrbp2 ENSMUST00000227183 - NO_TRANSLATION retained_intron ENSMUSG00000075590 Nrbp2 ENSMUST00000227605 ENSMUSP00000154501 TRANSLATION nonsense_mediated_decay - - - 137.0 0.0 1.098 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000075590 Nrbp2 ENSMUST00000227646 - NO_TRANSLATION retained_intron ENSMUSG00000075590 Nrbp2 ENSMUST00000226356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075590 Nrbp2 ENSMUST00000228366 ENSMUSP00000154287 TRANSLATION protein_coding - - - 499.0 0.0 4.488 4.4 72.2 0.0 -4,-5 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000075590 Nrbp2 ENSMUST00000228431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075590 Nrbp2 ENSMUST00000226444 ENSMUSP00000154116 TRANSLATION nonsense_mediated_decay - - - 178.0 0.0 2.478 0.0 28.3 0.0 -4,-5 0.0005 2 -2.0 MINOR ENSMUSG00000075590 Nrbp2 ENSMUST00000228419 ENSMUSP00000154620 TRANSLATION nonsense_mediated_decay start - - 14.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000022330 Osr2 ENSMUST00000228684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022330 Osr2 ENSMUST00000022952 ENSMUSP00000022952 TRANSLATION protein_coding - CCDS27422.1 1 276.0 12.0 1.95 22.0 61.2 0.0 -4,-6 0.6638 1 10.458 MINOR ENSMUSG00000022330 Osr2 ENSMUST00000228152 ENSMUSP00000154286 TRANSLATION protein_coding - - - 312.0 20.0 3.33 25.4 109.4 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000022330 Osr2 ENSMUST00000227655 - NO_TRANSLATION retained_intron ENSMUSG00000022330 Osr2 ENSMUST00000226838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022257 Laptm4b ENSMUST00000226627 ENSMUSP00000153935 TRANSLATION protein_coding stop - - 159.0 0.0 1.165 0.0 0.0 3.0 -4,-6 0.0193 - -2.0 MINOR ENSMUSG00000022257 Laptm4b ENSMUST00000228547 ENSMUSP00000154118 TRANSLATION protein_coding start - - 89.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000022257 Laptm4b ENSMUST00000226437 ENSMUSP00000154241 TRANSLATION nonsense_mediated_decay - - - 44.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0105 - -2.0 MINOR ENSMUSG00000022257 Laptm4b ENSMUST00000022867 ENSMUSP00000022867 TRANSLATION protein_coding - CCDS27416.1 1 227.0 0.0 2.565 25.4 0.0 4.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000039704 Lmbrd2 ENSMUST00000226149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039704 Lmbrd2 ENSMUST00000227216 - NO_TRANSLATION retained_intron ENSMUSG00000039704 Lmbrd2 ENSMUST00000227556 ENSMUSP00000154020 TRANSLATION protein_coding - CCDS37039.1 - 694.0 0.0 0.0 14.5 627.8 8.0 -1,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000039704 Lmbrd2 ENSMUST00000090380 ENSMUSP00000087858 TRANSLATION protein_coding - - 1 649.0 0.0 0.0 0.0 393.0 7.0 -1,-5 0.0063 7 0.0 MINOR ENSMUSG00000032783 Troap ENSMUST00000039665 ENSMUSP00000035389 TRANSLATION protein_coding - CCDS57008.1 1 668.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.9012 - 0.0 PRINCIPAL:1 ENSMUSG00000032783 Troap ENSMUST00000230311 - NO_TRANSLATION retained_intron ENSMUSG00000032783 Troap ENSMUST00000229740 - NO_TRANSLATION retained_intron ENSMUSG00000032783 Troap ENSMUST00000230054 ENSMUSP00000155404 TRANSLATION protein_coding - CCDS57008.1 - 668.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.9012 - 0.0 PRINCIPAL:1 ENSMUSG00000032783 Troap ENSMUST00000229224 - NO_TRANSLATION retained_intron ENSMUSG00000032783 Troap ENSMUST00000230868 - NO_TRANSLATION retained_intron ENSMUSG00000005125 Ndrg1 ENSMUST00000166420 ENSMUSP00000127099 TRANSLATION protein_coding stop - 3 141.0 0.0 3.69 0.0 118.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005125 Ndrg1 ENSMUST00000170903 ENSMUSP00000127302 TRANSLATION protein_coding stop - 5 157.0 0.0 3.7 0.0 203.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005125 Ndrg1 ENSMUST00000163496 ENSMUSP00000130584 TRANSLATION protein_coding stop - 5 155.0 0.0 3.37 0.0 200.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005125 Ndrg1 ENSMUST00000171266 ENSMUSP00000129093 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005125 Ndrg1 ENSMUST00000167817 ENSMUSP00000127075 TRANSLATION protein_coding start/stop - 3 119.0 0.0 3.24 0.0 113.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000005125 Ndrg1 ENSMUST00000164675 ENSMUSP00000130150 TRANSLATION nonsense_mediated_decay - - 3 93.0 0.0 0.63 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005125 Ndrg1 ENSMUST00000171569 - NO_TRANSLATION retained_intron ENSMUSG00000005125 Ndrg1 ENSMUST00000168542 ENSMUSP00000127940 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.63 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005125 Ndrg1 ENSMUST00000165966 - NO_TRANSLATION retained_intron ENSMUSG00000005125 Ndrg1 ENSMUST00000005256 ENSMUSP00000005256 TRANSLATION protein_coding - CCDS37092.1 1 394.0 0.0 8.51 12.0 424.0 0.0 -4,-5 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000005125 Ndrg1 ENSMUST00000168979 ENSMUSP00000126985 TRANSLATION protein_coding stop - 3 174.0 0.0 4.2 0.0 234.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000005125 Ndrg1 ENSMUST00000164070 ENSMUSP00000126091 TRANSLATION protein_coding stop - 5 53.0 0.0 0.8 0.0 29.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000005125 Ndrg1 ENSMUST00000172447 ENSMUSP00000130281 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 0.63 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000048699 Krt90 ENSMUST00000023714 ENSMUSP00000023714 TRANSLATION protein_coding - CCDS27855.1 1 538.0 0.0 4.75 0.1 460.8 0.0 -4,0 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000096883 Shisa8 ENSMUST00000229543 ENSMUSP00000155616 TRANSLATION protein_coding stop - - 242.0 0.0 0.0 0.0 0.0 0.0 -3,0 0.0026 4 -2.0 MINOR ENSMUSG00000096883 Shisa8 ENSMUST00000179269 ENSMUSP00000137002 TRANSLATION protein_coding - CCDS56994.1 1 399.0 0.0 0.0 1.4 107.4 0.0 0,-4 1.0 4 7.0 PRINCIPAL:1 ENSMUSG00000023000 Dhh ENSMUST00000023737 ENSMUSP00000023737 TRANSLATION protein_coding - CCDS27810.1 1 396.0 11.0 2.5 8.0 516.2 0.0 1,-3 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000023000 Dhh ENSMUST00000229775 ENSMUSP00000155712 TRANSLATION protein_coding - - - 138.0 3.0 1.0 0.0 101.4 0.0 1,-3 0.0008 - 3.066 MINOR ENSMUSG00000037617 Spag1 ENSMUST00000171205 ENSMUSP00000132233 TRANSLATION protein_coding - CCDS37061.1 1 901.0 0.0 8.382 0.0 140.7 0.0 -4,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000037617 Spag1 ENSMUST00000227715 - NO_TRANSLATION retained_intron ENSMUSG00000037617 Spag1 ENSMUST00000227436 - NO_TRANSLATION retained_intron ENSMUSG00000037617 Spag1 ENSMUST00000227849 - NO_TRANSLATION retained_intron ENSMUSG00000037617 Spag1 ENSMUST00000047348 ENSMUSP00000047335 TRANSLATION protein_coding - CCDS37061.1 1 901.0 0.0 8.382 0.0 140.7 0.0 -4,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000037617 Spag1 ENSMUST00000227623 ENSMUSP00000153834 TRANSLATION protein_coding stop - - 77.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037617 Spag1 ENSMUST00000227524 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037617 Spag1 ENSMUST00000227582 - NO_TRANSLATION retained_intron ENSMUSG00000039168 Dap ENSMUST00000186425 ENSMUSP00000140007 TRANSLATION protein_coding - - 3 79.0 0.0 0.8 4.2 78.7 0.0 -4,-5 0.0854 3 10.714 MINOR ENSMUSG00000039168 Dap ENSMUST00000186547 ENSMUSP00000140481 TRANSLATION protein_coding - - 3 79.0 0.0 0.8 4.2 78.7 0.0 -4,-5 0.0854 3 10.714 MINOR ENSMUSG00000039168 Dap ENSMUST00000186109 ENSMUSP00000141108 TRANSLATION protein_coding stop - 5 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039168 Dap ENSMUST00000044524 ENSMUSP00000047186 TRANSLATION protein_coding - CCDS27406.1 1 102.0 0.0 0.8 30.3 107.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000039168 Dap ENSMUST00000185618 ENSMUSP00000140568 TRANSLATION protein_coding - - 3 62.0 0.0 0.8 0.0 64.7 0.0 -4,-1 0.0206 1 9.438 MINOR ENSMUSG00000042535 Gtpbp1 ENSMUST00000231095 ENSMUSP00000155592 TRANSLATION nonsense_mediated_decay start - - 137.0 5.0 2.25 0.0 49.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042535 Gtpbp1 ENSMUST00000229046 ENSMUSP00000155617 TRANSLATION protein_coding stop - - 145.0 10.0 3.08 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042535 Gtpbp1 ENSMUST00000230262 ENSMUSP00000155719 TRANSLATION protein_coding start/stop - - 174.0 3.0 4.16 0.0 30.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000042535 Gtpbp1 ENSMUST00000228991 ENSMUSP00000154947 TRANSLATION protein_coding start - - 201.0 0.0 2.83 0.0 0.0 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000042535 Gtpbp1 ENSMUST00000230023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042535 Gtpbp1 ENSMUST00000230898 ENSMUSP00000155128 TRANSLATION protein_coding stop - - 80.0 2.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042535 Gtpbp1 ENSMUST00000046463 ENSMUSP00000043575 TRANSLATION protein_coding - CCDS27648.1 1 668.0 18.0 11.89 12.6 83.2 0.0 -4,-2 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000042535 Gtpbp1 ENSMUST00000229583 ENSMUSP00000155748 TRANSLATION protein_coding start - - 196.0 0.0 2.4 0.0 0.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000042535 Gtpbp1 ENSMUST00000230496 - NO_TRANSLATION retained_intron ENSMUSG00000022583 Ly6f ENSMUST00000023247 ENSMUSP00000023247 TRANSLATION protein_coding - CCDS27543.1 5 134.0 0.0 2.0 0.1 61.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022583 Ly6f ENSMUST00000189654 ENSMUSP00000140899 TRANSLATION protein_coding - CCDS27543.1 2 134.0 0.0 2.0 0.1 61.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041935 Rimoc1 ENSMUST00000228421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041935 Rimoc1 ENSMUST00000046633 ENSMUSP00000038476 TRANSLATION protein_coding - CCDS27360.1 1 294.0 0.0 0.0 12.5 0.0 0.0 -4,-5 1.0 5 3.0 PRINCIPAL:1 ENSMUSG00000000934 Top1mt ENSMUST00000230774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000934 Top1mt ENSMUST00000230469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000934 Top1mt ENSMUST00000000958 ENSMUSP00000000958 TRANSLATION protein_coding - CCDS27547.1 1 593.0 5.0 12.75 0.0 740.8 0.0 -4,0 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000019146 Cacng2 ENSMUST00000019290 ENSMUSP00000019290 TRANSLATION protein_coding - CCDS27608.1 1 323.0 0.0 2.68 29.8 194.3 0.0 -1,-4 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000054263 Lifr ENSMUST00000226826 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054263 Lifr ENSMUST00000228723 ENSMUSP00000154715 TRANSLATION protein_coding stop - - 140.0 0.0 2.5 0.0 0.0 0.0 -2,0 0.0004 3 -2.0 MINOR ENSMUSG00000054263 Lifr ENSMUST00000227727 ENSMUSP00000154181 TRANSLATION protein_coding - CCDS49577.1 - 719.0 0.0 10.88 0.0 29.4 0.0 -2,0 0.1021 17 9.774 MINOR ENSMUSG00000054263 Lifr ENSMUST00000164529 ENSMUSP00000131434 TRANSLATION protein_coding - CCDS49577.1 1 719.0 0.0 10.88 0.0 29.4 0.0 -2,0 0.1021 17 9.774 MINOR ENSMUSG00000054263 Lifr ENSMUST00000226471 ENSMUSP00000154750 TRANSLATION protein_coding - CCDS27369.1 - 1092.0 0.0 11.992 4.3 29.4 1.0 -2,0 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000054263 Lifr ENSMUST00000226934 ENSMUSP00000153968 TRANSLATION nonsense_mediated_decay - CCDS49577.1 - 719.0 0.0 10.88 0.0 29.4 0.0 -2,0 0.1021 - -2.0 MINOR ENSMUSG00000054263 Lifr ENSMUST00000171588 ENSMUSP00000126137 TRANSLATION protein_coding - CCDS27369.1 5 1092.0 0.0 11.992 4.3 29.4 1.0 -2,0 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000054263 Lifr ENSMUST00000067190 ENSMUSP00000064551 TRANSLATION protein_coding - CCDS27369.1 1 1092.0 0.0 11.992 4.3 29.4 1.0 -2,0 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000062760 Shisal1 ENSMUST00000189994 ENSMUSP00000140712 TRANSLATION protein_coding stop - 2 157.0 0.0 1.535 0.0 0.0 2.0 3,-3 0.1218 - -2.0 MINOR ENSMUSG00000062760 Shisal1 ENSMUST00000239449 ENSMUSP00000159372 TRANSLATION protein_coding - CCDS49687.1 - 199.0 0.0 1.535 18.3 0.0 2.0 3,-4 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000062760 Shisal1 ENSMUST00000186527 ENSMUSP00000140964 TRANSLATION protein_coding stop - 3 41.0 0.0 0.0 0.0 0.0 0.0 2,-4 0.0342 - -2.0 MINOR ENSMUSG00000062760 Shisal1 ENSMUST00000080751 ENSMUSP00000079575 TRANSLATION protein_coding - - 1 198.0 0.0 1.535 18.3 0.0 2.0 3,-3 0.8756 - 10.0 ALTERNATIVE:1 ENSMUSG00000062760 Shisal1 ENSMUST00000189248 ENSMUSP00000141117 TRANSLATION protein_coding - CCDS84184.1 1 219.0 0.0 1.535 0.0 0.0 2.0 -2,2 0.235 - 6.0 MINOR ENSMUSG00000022155 Mroh2b ENSMUST00000045736 ENSMUSP00000036148 TRANSLATION protein_coding - CCDS49572.1 5 1581.0 0.0 2.4 3.0 0.0 0.0 -4,-5 1.0 10 7.0 PRINCIPAL:1 ENSMUSG00000022155 Mroh2b ENSMUST00000226277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022155 Mroh2b ENSMUST00000226849 - NO_TRANSLATION retained_intron ENSMUSG00000022155 Mroh2b ENSMUST00000228458 - NO_TRANSLATION retained_intron ENSMUSG00000022436 Sh3bp1 ENSMUST00000148893 ENSMUSP00000117839 TRANSLATION protein_coding stop - 3 55.0 0.0 0.15 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000022436 Sh3bp1 ENSMUST00000231057 - NO_TRANSLATION retained_intron ENSMUSG00000022436 Sh3bp1 ENSMUST00000132047 ENSMUSP00000138598 TRANSLATION nonsense_mediated_decay - - 1 587.0 0.0 3.39 0.0 264.9 0.0 -4,-2 0.2432 15 -2.0 MINOR ENSMUSG00000022436 Sh3bp1 ENSMUST00000229492 - NO_TRANSLATION retained_intron ENSMUSG00000022436 Sh3bp1 ENSMUST00000151146 ENSMUSP00000138780 TRANSLATION nonsense_mediated_decay - - 1 209.0 0.0 0.55 0.0 69.6 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000022436 Sh3bp1 ENSMUST00000229803 - NO_TRANSLATION retained_intron ENSMUSG00000022436 Sh3bp1 ENSMUST00000001226 ENSMUSP00000001226 TRANSLATION protein_coding - CCDS84176.1 5 680.0 0.0 3.39 0.1 264.9 0.0 -4,-2 0.4128 18 8.0 ALTERNATIVE:2 ENSMUSG00000022436 Sh3bp1 ENSMUST00000061239 ENSMUSP00000052181 TRANSLATION protein_coding - CCDS27626.1 1 582.0 0.0 3.39 0.0 264.9 0.0 -4,-2 1.0 15 8.0 PRINCIPAL:2 ENSMUSG00000022436 Sh3bp1 ENSMUST00000109698 ENSMUSP00000105320 TRANSLATION protein_coding - CCDS84177.1 1 584.0 0.0 3.39 0.0 264.9 0.0 -4,-2 0.6492 15 8.0 ALTERNATIVE:2 ENSMUSG00000063260 Syt10 ENSMUST00000029441 ENSMUSP00000029441 TRANSLATION protein_coding - CCDS27756.1 1 523.0 22.0 3.8 20.6 174.0 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000054136 Adm2 ENSMUST00000066991 ENSMUSP00000064761 TRANSLATION protein_coding - CCDS27744.1 1 150.0 0.0 0.6 1.1 27.4 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000048307 Ankrd46 ENSMUST00000228630 - NO_TRANSLATION retained_intron ENSMUSG00000048307 Ankrd46 ENSMUST00000228601 ENSMUSP00000154507 TRANSLATION protein_coding stop - - 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048307 Ankrd46 ENSMUST00000057486 ENSMUSP00000052521 TRANSLATION protein_coding - CCDS27429.1 1 228.0 0.0 1.715 34.7 49.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000048307 Ankrd46 ENSMUST00000226506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048307 Ankrd46 ENSMUST00000228941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049148 Plcxd3 ENSMUST00000061925 ENSMUSP00000053553 TRANSLATION protein_coding - CCDS27362.2 1 321.0 5.0 3.0 33.5 0.0 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000049148 Plcxd3 ENSMUST00000130332 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036158 Prickle1 ENSMUST00000048982 ENSMUSP00000049204 TRANSLATION protein_coding - CCDS27769.1 1 832.0 23.0 4.6 11.0 223.4 0.0 -4,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000036158 Prickle1 ENSMUST00000109255 ENSMUSP00000104878 TRANSLATION protein_coding - CCDS27769.1 1 832.0 23.0 4.6 11.0 223.4 0.0 -4,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000033762 Recql4 ENSMUST00000230544 ENSMUSP00000155694 TRANSLATION protein_coding - - - 1173.0 13.0 8.98 0.0 138.8 0.0 -4,-6 0.2184 4 14.898 MINOR ENSMUSG00000033762 Recql4 ENSMUST00000036852 ENSMUSP00000044363 TRANSLATION protein_coding - CCDS27588.1 1 1216.0 13.0 10.53 0.1 138.8 0.0 -4,-1 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000033762 Recql4 ENSMUST00000229360 - NO_TRANSLATION retained_intron ENSMUSG00000033762 Recql4 ENSMUST00000230724 ENSMUSP00000154957 TRANSLATION nonsense_mediated_decay - - - 195.0 0.0 1.75 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000064373 Selenop ENSMUST00000160311 ENSMUSP00000124580 TRANSLATION protein_coding stop - 2 110.0 0.0 0.0 0.0 124.5 0.0 3,-2 0.0004 1 -2.0 MINOR ENSMUSG00000064373 Selenop ENSMUST00000082424 ENSMUSP00000081004 TRANSLATION protein_coding - CCDS27357.1 5 380.0 0.0 0.0 3.8 596.7 0.0 3,-2 1.0 7 7.0 PRINCIPAL:1 ENSMUSG00000064373 Selenop ENSMUST00000159247 - NO_TRANSLATION retained_intron ENSMUSG00000064373 Selenop ENSMUST00000160787 ENSMUSP00000124852 TRANSLATION protein_coding stop - 5 177.0 0.0 0.0 0.0 295.9 0.0 3,-2 0.0012 5 -2.0 MINOR ENSMUSG00000064373 Selenop ENSMUST00000159216 ENSMUSP00000124305 TRANSLATION protein_coding - CCDS27357.1 5 380.0 0.0 0.0 3.8 596.7 0.0 3,-2 1.0 7 7.0 PRINCIPAL:1 ENSMUSG00000064373 Selenop ENSMUST00000159158 ENSMUSP00000125632 TRANSLATION protein_coding stop - 2 124.0 0.0 0.0 0.0 166.2 0.0 3,-2 0.0004 2 -2.0 MINOR ENSMUSG00000064373 Selenop ENSMUST00000160930 ENSMUSP00000125505 TRANSLATION protein_coding stop - 3 177.0 0.0 0.0 0.0 295.9 0.0 3,-2 0.0012 5 -2.0 MINOR ENSMUSG00000050310 Rictor ENSMUST00000228266 - NO_TRANSLATION retained_intron ENSMUSG00000050310 Rictor ENSMUST00000226201 - NO_TRANSLATION retained_intron ENSMUSG00000050310 Rictor ENSMUST00000061656 ENSMUSP00000051809 TRANSLATION protein_coding - CCDS37032.1 1 1708.0 0.0 25.5 9.8 838.5 0.0 -4,-2 1.0 24 15.0 PRINCIPAL:1 ENSMUSG00000050310 Rictor ENSMUST00000226181 - NO_TRANSLATION retained_intron ENSMUSG00000050310 Rictor ENSMUST00000228918 - NO_TRANSLATION retained_intron ENSMUSG00000022280 Rnf19a ENSMUST00000228358 ENSMUSP00000154617 TRANSLATION protein_coding - - - 558.0 23.0 3.04 0.0 83.6 2.0 -4,-5 0.0555 5 18.0 MINOR ENSMUSG00000022280 Rnf19a ENSMUST00000022890 ENSMUSP00000022890 TRANSLATION protein_coding - CCDS27427.1 1 840.0 23.0 3.04 9.3 83.6 2.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000022280 Rnf19a ENSMUST00000227735 - NO_TRANSLATION retained_intron ENSMUSG00000055041 Commd5 ENSMUST00000068407 ENSMUSP00000069159 TRANSLATION protein_coding - CCDS27594.1 1 224.0 0.0 0.2 14.7 58.8 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000055041 Commd5 ENSMUST00000230815 - NO_TRANSLATION retained_intron ENSMUSG00000055041 Commd5 ENSMUST00000109793 ENSMUSP00000105416 TRANSLATION protein_coding - CCDS27594.1 5 224.0 0.0 0.2 14.7 58.8 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000023755 Rhebl1 ENSMUST00000229348 ENSMUSP00000155216 TRANSLATION protein_coding - - - 188.0 24.0 5.58 21.4 137.5 0.0 -4,-7 0.8182 - 20.716 MINOR ENSMUSG00000023755 Rhebl1 ENSMUST00000229508 ENSMUSP00000155010 TRANSLATION protein_coding stop - - 151.0 25.0 4.58 0.0 136.4 0.0 -4,-7 0.002 - -2.0 MINOR ENSMUSG00000023755 Rhebl1 ENSMUST00000229876 ENSMUSP00000155149 TRANSLATION protein_coding - - - 156.0 25.0 4.248 0.0 110.0 0.0 -4,-7 0.0006 - 13.068 MINOR ENSMUSG00000023755 Rhebl1 ENSMUST00000229352 - NO_TRANSLATION retained_intron ENSMUSG00000023755 Rhebl1 ENSMUST00000024518 ENSMUSP00000024518 TRANSLATION protein_coding - CCDS27809.1 1 184.0 25.0 5.58 21.4 147.8 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000023755 Rhebl1 ENSMUST00000229556 ENSMUSP00000155126 TRANSLATION protein_coding stop - - 154.0 25.0 4.58 1.2 139.1 0.0 -4,-7 0.0205 - -2.0 MINOR ENSMUSG00000023755 Rhebl1 ENSMUST00000147015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023755 Rhebl1 ENSMUST00000230623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023755 Rhebl1 ENSMUST00000155699 - NO_TRANSLATION retained_intron ENSMUSG00000039100 Marchf6 ENSMUST00000228122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039100 Marchf6 ENSMUST00000226207 - NO_TRANSLATION retained_intron ENSMUSG00000039100 Marchf6 ENSMUST00000226868 - NO_TRANSLATION retained_intron ENSMUSG00000039100 Marchf6 ENSMUST00000090227 ENSMUSP00000087694 TRANSLATION protein_coding - CCDS37054.1 1 909.0 8.0 1.6 15.6 53.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000022350 Washc5 ENSMUST00000227725 ENSMUSP00000154441 TRANSLATION protein_coding - - - 709.0 0.0 0.0 0.0 937.9 0.0 -4,-5 0.0505 22 0.0 MINOR ENSMUSG00000022350 Washc5 ENSMUST00000022976 ENSMUSP00000022976 TRANSLATION protein_coding - CCDS37083.1 1 1159.0 0.0 0.0 36.2 1657.4 0.0 -4,-5 1.0 34 10.0 PRINCIPAL:1 ENSMUSG00000062154 Tex33 ENSMUST00000074380 ENSMUSP00000073984 TRANSLATION protein_coding - CCDS49665.1 1 266.0 0.0 0.75 0.1 233.3 0.0 -4,-6 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000062154 Tex33 ENSMUST00000169575 ENSMUSP00000130849 TRANSLATION protein_coding - CCDS49664.1 5 241.0 0.0 0.75 0.0 233.3 0.0 -4,-2 0.3643 3 8.0 ALTERNATIVE:2 ENSMUSG00000062154 Tex33 ENSMUST00000229878 ENSMUSP00000154854 TRANSLATION protein_coding stop - - 135.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000062154 Tex33 ENSMUST00000165170 ENSMUSP00000133264 TRANSLATION protein_coding - CCDS49665.1 1 266.0 0.0 0.75 0.1 233.3 0.0 -4,-6 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000075604 Cyp11b1 ENSMUST00000170259 ENSMUSP00000127888 TRANSLATION protein_coding - CCDS27535.1 1 501.0 29.0 8.75 6.6 360.1 0.0 -4,0 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000068227 Il2rb ENSMUST00000089398 ENSMUSP00000086820 TRANSLATION protein_coding - CCDS27616.1 1 539.0 5.0 4.75 0.0 0.0 1.0 3,-2 1.0 - 11.0 PRINCIPAL:1 ENSMUSG00000068227 Il2rb ENSMUST00000163494 ENSMUSP00000127006 TRANSLATION protein_coding - CCDS27616.1 1 539.0 5.0 4.75 0.0 0.0 1.0 3,-2 1.0 - 11.0 PRINCIPAL:1 ENSMUSG00000036698 Ago2 ENSMUST00000044113 ENSMUSP00000042207 TRANSLATION protein_coding - CCDS37098.1 1 860.0 5.0 16.37 8.4 822.2 0.0 -4,-6 1.0 21 20.0 PRINCIPAL:1 ENSMUSG00000036698 Ago2 ENSMUST00000230464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036698 Ago2 ENSMUST00000230158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094559 Cyp2d34 ENSMUST00000109515 ENSMUSP00000105141 TRANSLATION protein_coding - CCDS37161.1 1 504.0 30.0 9.58 8.7 466.0 1.0 -1,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000094559 Cyp2d34 ENSMUST00000229833 ENSMUSP00000155117 TRANSLATION nonsense_mediated_decay - - - 92.0 0.0 1.1485 0.0 0.0 1.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000094559 Cyp2d34 ENSMUST00000230716 - NO_TRANSLATION retained_intron ENSMUSG00000072663 Spef2 ENSMUST00000041840 ENSMUSP00000035762 TRANSLATION protein_coding - CCDS37041.1 1 875.0 11.0 1.175 0.0 114.0 0.0 -4,-7 1.0 4 14.0 PRINCIPAL:2 ENSMUSG00000072663 Spef2 ENSMUST00000160236 ENSMUSP00000124222 TRANSLATION protein_coding - - 5 1724.0 11.0 1.175 0.0 114.0 0.0 -4,-7 0.3998 7 14.0 ALTERNATIVE:2 ENSMUSG00000072663 Spef2 ENSMUST00000159093 ENSMUSP00000124891 TRANSLATION protein_coding stop - 5 622.0 7.0 0.0 0.0 80.3 0.0 -4,-7 0.0056 3 -2.0 MINOR ENSMUSG00000072663 Spef2 ENSMUST00000162780 ENSMUSP00000124393 TRANSLATION protein_coding - - 5 513.0 0.0 0.0 1.0 80.3 0.0 -4,-7 0.0089 3 2.0 MINOR ENSMUSG00000072663 Spef2 ENSMUST00000208854 ENSMUSP00000146967 TRANSLATION protein_coding - - 5 2076.0 11.0 1.175 0.0 114.0 0.0 -4,-7 0.4439 5 14.0 ALTERNATIVE:2 ENSMUSG00000072663 Spef2 ENSMUST00000159368 ENSMUSP00000124723 TRANSLATION protein_coding - CCDS84163.1 1 456.0 0.0 0.0 0.0 80.3 0.0 -4,-7 0.0485 3 2.0 MINOR ENSMUSG00000022265 Ank ENSMUST00000134004 - NO_TRANSLATION retained_intron ENSMUSG00000022265 Ank ENSMUST00000022875 ENSMUSP00000022875 TRANSLATION protein_coding - CCDS27402.1 1 492.0 0.0 0.0 28.2 730.3 0.0 -3,-5 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000049382 Krt8 ENSMUST00000023952 ENSMUSP00000023952 TRANSLATION protein_coding - CCDS27868.1 1 490.0 0.0 4.55 8.1 448.4 0.0 -4,0 1.0 36 15.0 PRINCIPAL:1 ENSMUSG00000071586 Gm10337 ENSMUST00000096145 ENSMUSP00000093859 TRANSLATION protein_coding start/stop - - 55.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - -2.0 PRINCIPAL:1 ENSMUSG00000036800 Fam135b ENSMUST00000229189 ENSMUSP00000155239 TRANSLATION protein_coding stop - - 159.0 0.0 0.0 0.0 42.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036800 Fam135b ENSMUST00000230569 - NO_TRANSLATION retained_intron ENSMUSG00000036800 Fam135b ENSMUST00000229634 - NO_TRANSLATION retained_intron ENSMUSG00000036800 Fam135b ENSMUST00000022953 ENSMUSP00000022953 TRANSLATION protein_coding - CCDS49626.1 5 1403.0 0.0 0.0 2.4 253.2 0.0 -4,-5 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000022376 Adcy8 ENSMUST00000023007 ENSMUSP00000023007 TRANSLATION protein_coding - CCDS27506.1 1 1249.0 8.0 7.65 9.1 637.0 13.0 -4,-5 1.0 11 17.0 PRINCIPAL:4 ENSMUSG00000022376 Adcy8 ENSMUST00000228014 ENSMUSP00000154029 TRANSLATION protein_coding - - - 1219.0 8.0 7.4 9.1 637.0 12.0 -4,-5 0.76 11 16.502 ALTERNATIVE:1 ENSMUSG00000022376 Adcy8 ENSMUST00000228109 - NO_TRANSLATION retained_intron ENSMUSG00000051934 Spats2 ENSMUST00000229493 - NO_TRANSLATION retained_intron ENSMUSG00000051934 Spats2 ENSMUST00000229073 ENSMUSP00000155388 TRANSLATION protein_coding stop - - 200.0 0.0 0.0 0.0 82.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000051934 Spats2 ENSMUST00000229147 ENSMUSP00000155137 TRANSLATION protein_coding stop - - 255.0 0.0 0.0 0.0 132.2 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000051934 Spats2 ENSMUST00000063517 ENSMUSP00000070549 TRANSLATION protein_coding - CCDS27816.1 1 545.0 0.0 2.75 8.8 404.9 0.0 -4,-6 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000051934 Spats2 ENSMUST00000230628 ENSMUSP00000155049 TRANSLATION protein_coding stop - - 160.0 0.0 0.0 0.0 64.9 0.0 -4,-6 0.0003 4 -2.0 MINOR ENSMUSG00000051934 Spats2 ENSMUST00000229066 ENSMUSP00000154863 TRANSLATION protein_coding stop - - 160.0 0.0 0.0 0.0 76.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000051934 Spats2 ENSMUST00000229663 ENSMUSP00000155814 TRANSLATION protein_coding stop - - 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000063268 Parp10 ENSMUST00000166151 - NO_TRANSLATION retained_intron ENSMUSG00000063268 Parp10 ENSMUST00000165738 ENSMUSP00000129765 TRANSLATION protein_coding - CCDS49650.1 1 960.0 0.0 4.93 0.0 113.6 0.0 -4,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000063268 Parp10 ENSMUST00000169255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063268 Parp10 ENSMUST00000170851 - NO_TRANSLATION retained_intron ENSMUSG00000063268 Parp10 ENSMUST00000075689 ENSMUSP00000075110 TRANSLATION protein_coding - CCDS49650.1 1 960.0 0.0 4.93 0.0 113.6 0.0 -4,-5 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000063268 Parp10 ENSMUST00000170226 ENSMUSP00000131370 TRANSLATION nonsense_mediated_decay start - 2 110.0 0.0 1.33 0.0 52.1 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000115463 Gm49356 ENSMUST00000228787 ENSMUSP00000154571 TRANSLATION nonsense_mediated_decay,RT - - - 69.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - -2.0 PRINCIPAL:1 ENSMUSG00000075524 4930407I10Rik ENSMUST00000100396 ENSMUSP00000097965 TRANSLATION protein_coding - CCDS49678.1 1 1512.0 0.0 0.0 0.0 351.2 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000033237 Arid2 ENSMUST00000176739 - NO_TRANSLATION retained_intron ENSMUSG00000033237 Arid2 ENSMUST00000175735 - NO_TRANSLATION retained_intron ENSMUSG00000033237 Arid2 ENSMUST00000096250 ENSMUSP00000093969 TRANSLATION protein_coding - CCDS37185.2 5 1828.0 6.0 2.3 6.6 174.1 0.0 -4,-6 1.0 28 20.0 PRINCIPAL:1 ENSMUSG00000033237 Arid2 ENSMUST00000134985 ENSMUSP00000135829 TRANSLATION protein_coding - - 1 145.0 0.0 2.3 0.0 91.8 0.0 -4,-6 0.0247 3 7.062 MINOR ENSMUSG00000033697 Arhgap39 ENSMUST00000239003 ENSMUSP00000158945 TRANSLATION protein_coding - CCDS49654.1 - 1109.0 0.0 4.5 4.5 204.3 0.0 -4,-5 0.739 24 9.0 ALTERNATIVE:1 ENSMUSG00000033697 Arhgap39 ENSMUST00000177255 - NO_TRANSLATION retained_intron ENSMUSG00000033697 Arhgap39 ENSMUST00000175843 ENSMUSP00000135132 TRANSLATION protein_coding stop - 3 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0122 - -2.0 MINOR ENSMUSG00000033697 Arhgap39 ENSMUST00000176724 - NO_TRANSLATION retained_intron ENSMUSG00000033697 Arhgap39 ENSMUST00000176855 ENSMUSP00000135043 TRANSLATION protein_coding stop - 3 117.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033697 Arhgap39 ENSMUST00000177026 ENSMUSP00000135896 TRANSLATION protein_coding - - 5 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000033697 Arhgap39 ENSMUST00000077821 ENSMUSP00000076993 TRANSLATION protein_coding - CCDS27592.2 1 1078.0 0.0 4.5 4.5 212.4 0.0 -4,-5 1.0 24 10.0 PRINCIPAL:4 ENSMUSG00000033697 Arhgap39 ENSMUST00000239134 ENSMUSP00000158984 TRANSLATION protein_coding - - - 1076.0 0.0 4.5 4.5 212.4 0.0 -4,-5 0.8251 24 10.0 ALTERNATIVE:1 ENSMUSG00000033697 Arhgap39 ENSMUST00000036176 ENSMUSP00000036697 TRANSLATION protein_coding - - 5 1107.0 0.0 4.5 4.5 204.3 0.0 -4,-5 0.5811 24 9.0 ALTERNATIVE:1 ENSMUSG00000033697 Arhgap39 ENSMUST00000177011 - NO_TRANSLATION retained_intron ENSMUSG00000033697 Arhgap39 ENSMUST00000176219 ENSMUSP00000135340 TRANSLATION protein_coding - - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000033697 Arhgap39 ENSMUST00000176736 ENSMUSP00000135154 TRANSLATION protein_coding stop - 3 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0217 - -2.0 MINOR ENSMUSG00000022360 Atad2 ENSMUST00000228783 ENSMUSP00000153936 TRANSLATION protein_coding - - - 1040.0 12.0 8.87 0.0 198.8 0.0 -4,-2 0.9743 7 14.0 PRINCIPAL:2 ENSMUSG00000022360 Atad2 ENSMUST00000227171 - NO_TRANSLATION retained_intron ENSMUSG00000022360 Atad2 ENSMUST00000226582 - NO_TRANSLATION retained_intron ENSMUSG00000022360 Atad2 ENSMUST00000226507 - NO_TRANSLATION retained_intron ENSMUSG00000022360 Atad2 ENSMUST00000226526 - NO_TRANSLATION retained_intron ENSMUSG00000022360 Atad2 ENSMUST00000226649 - NO_TRANSLATION retained_intron ENSMUSG00000022360 Atad2 ENSMUST00000227134 - NO_TRANSLATION retained_intron ENSMUSG00000022360 Atad2 ENSMUST00000038194 ENSMUSP00000043691 TRANSLATION protein_coding - CCDS37079.1 5 1364.0 12.0 8.87 0.0 198.8 0.0 -4,-7 0.6709 12 14.0 ALTERNATIVE:2 ENSMUSG00000022558 Mroh1 ENSMUST00000160525 - NO_TRANSLATION retained_intron ENSMUSG00000022558 Mroh1 ENSMUST00000161265 ENSMUSP00000124978 TRANSLATION nonsense_mediated_decay start - 5 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0532 - -2.0 MINOR ENSMUSG00000022558 Mroh1 ENSMUST00000161962 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022558 Mroh1 ENSMUST00000162319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022558 Mroh1 ENSMUST00000160728 ENSMUSP00000124321 TRANSLATION protein_coding stop - 2 111.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0174 - -2.0 MINOR ENSMUSG00000022558 Mroh1 ENSMUST00000161352 - NO_TRANSLATION retained_intron ENSMUSG00000022558 Mroh1 ENSMUST00000160806 - NO_TRANSLATION retained_intron ENSMUSG00000022558 Mroh1 ENSMUST00000161350 - NO_TRANSLATION retained_intron ENSMUSG00000022558 Mroh1 ENSMUST00000092595 ENSMUSP00000090256 TRANSLATION protein_coding - CCDS49652.1 1 1094.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2292 18 0.0 MINOR ENSMUSG00000022558 Mroh1 ENSMUST00000162204 - NO_TRANSLATION retained_intron ENSMUSG00000022558 Mroh1 ENSMUST00000096385 ENSMUSP00000094115 TRANSLATION protein_coding - CCDS49651.1 1 1640.0 0.0 1.9 8.3 0.0 0.0 -4,-7 1.0 27 9.0 PRINCIPAL:1 ENSMUSG00000022558 Mroh1 ENSMUST00000161683 - NO_TRANSLATION retained_intron ENSMUSG00000022558 Mroh1 ENSMUST00000161305 ENSMUSP00000154882 TRANSLATION protein_coding - CCDS49652.1 5 1094.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2292 18 0.0 MINOR ENSMUSG00000022558 Mroh1 ENSMUST00000160631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022558 Mroh1 ENSMUST00000160986 - NO_TRANSLATION retained_intron ENSMUSG00000042428 Mgat3 ENSMUST00000044970 ENSMUSP00000043077 TRANSLATION protein_coding - CCDS27660.1 1 538.0 0.0 0.0 8.2 0.0 0.0 -1,-5 1.0 3 3.0 PRINCIPAL:1 ENSMUSG00000033047 Eif3l ENSMUST00000229310 ENSMUSP00000154872 TRANSLATION protein_coding stop - - 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033047 Eif3l ENSMUST00000230032 - NO_TRANSLATION retained_intron ENSMUSG00000033047 Eif3l ENSMUST00000040518 ENSMUSP00000038839 TRANSLATION protein_coding - CCDS27632.1 1 564.0 0.0 5.5 20.3 587.0 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000033047 Eif3l ENSMUST00000229338 - NO_TRANSLATION retained_intron ENSMUSG00000022432 Smc1b ENSMUST00000227591 ENSMUSP00000154461 TRANSLATION nonsense_mediated_decay start - - 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.018 - -2.0 MINOR ENSMUSG00000022432 Smc1b ENSMUST00000023068 ENSMUSP00000023068 TRANSLATION protein_coding - CCDS27718.1 1 1248.0 7.0 10.29375 0.4 279.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000081534 Slc48a1 ENSMUST00000135073 ENSMUSP00000122485 TRANSLATION nonsense_mediated_decay - - 3 60.0 0.0 1.0 0.0 0.0 2.0 -4,-1 0.0017 - -2.0 MINOR ENSMUSG00000081534 Slc48a1 ENSMUST00000117892 ENSMUSP00000112644 TRANSLATION protein_coding - CCDS49715.1 1 146.0 0.0 3.0 25.5 97.5 6.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000081534 Slc48a1 ENSMUST00000229084 ENSMUSP00000155411 TRANSLATION protein_coding start - - 88.0 0.0 2.0 0.1 55.7 4.0 -4,-7 0.0021 - -2.0 MINOR ENSMUSG00000081534 Slc48a1 ENSMUST00000230531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003355 Fkbp11 ENSMUST00000229562 - NO_TRANSLATION retained_intron ENSMUSG00000003355 Fkbp11 ENSMUST00000003445 ENSMUSP00000003445 TRANSLATION protein_coding - CCDS27803.1 1 201.0 0.0 4.03 5.2 85.2 0.0 3,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000003355 Fkbp11 ENSMUST00000230743 - NO_TRANSLATION retained_intron ENSMUSG00000022577 Ly6h ENSMUST00000023241 ENSMUSP00000023241 TRANSLATION protein_coding - CCDS49640.1 2 139.0 0.0 2.0 6.5 67.8 0.0 3,-2 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000022577 Ly6h ENSMUST00000065417 ENSMUSP00000070646 TRANSLATION protein_coding - CCDS49640.1 2 139.0 0.0 2.0 6.5 67.8 0.0 3,-2 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000022577 Ly6h ENSMUST00000127095 ENSMUSP00000122061 TRANSLATION protein_coding - CCDS27544.1 1 160.0 0.0 2.0 3.5 67.8 0.0 0,2 0.6568 5 6.91 ALTERNATIVE:2 ENSMUSG00000022577 Ly6h ENSMUST00000228961 - NO_TRANSLATION retained_intron ENSMUSG00000022577 Ly6h ENSMUST00000150125 - NO_TRANSLATION retained_intron ENSMUSG00000022577 Ly6h ENSMUST00000156032 ENSMUSP00000122878 TRANSLATION protein_coding - CCDS27544.1 3 160.0 0.0 2.0 3.5 67.8 0.0 0,2 0.6568 5 6.91 ALTERNATIVE:2 ENSMUSG00000022577 Ly6h ENSMUST00000126129 ENSMUSP00000121951 TRANSLATION nonsense_mediated_decay - CCDS49640.1 5 139.0 0.0 2.0 6.5 67.8 0.0 3,-2 1.0 5 -2.0 MINOR ENSMUSG00000034259 Exosc4 ENSMUST00000059045 ENSMUSP00000050940 TRANSLATION protein_coding - CCDS37119.1 1 245.0 5.0 3.33 28.8 152.2 0.0 -4,-6 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000034259 Exosc4 ENSMUST00000167515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034259 Exosc4 ENSMUST00000230512 ENSMUSP00000155254 TRANSLATION nonsense_mediated_decay - - - 68.0 0.0 1.0 0.0 42.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022285 Ywhaz ENSMUST00000126184 ENSMUSP00000115928 TRANSLATION protein_coding stop - 2 88.0 0.0 2.25 0.0 108.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022285 Ywhaz ENSMUST00000022894 ENSMUSP00000022894 TRANSLATION protein_coding - CCDS27432.1 1 245.0 0.0 6.48 36.9 370.0 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000022285 Ywhaz ENSMUST00000154879 - NO_TRANSLATION retained_intron ENSMUSG00000022285 Ywhaz ENSMUST00000151635 ENSMUSP00000120610 TRANSLATION protein_coding stop - 5 44.0 0.0 1.25 0.0 45.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022285 Ywhaz ENSMUST00000110359 ENSMUSP00000105988 TRANSLATION protein_coding stop - 2 26.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022285 Ywhaz ENSMUST00000110362 ENSMUSP00000105991 TRANSLATION protein_coding - CCDS27432.1 1 245.0 0.0 6.48 36.9 370.0 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000022285 Ywhaz ENSMUST00000227067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022285 Ywhaz ENSMUST00000226851 ENSMUSP00000153983 TRANSLATION protein_coding stop - - 166.0 0.0 4.33 0.0 237.6 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000022285 Ywhaz ENSMUST00000110361 ENSMUSP00000105990 TRANSLATION protein_coding - CCDS27432.1 1 245.0 0.0 6.48 36.9 370.0 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000033006 Sox10 ENSMUST00000230261 ENSMUSP00000155639 TRANSLATION protein_coding stop - - 205.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033006 Sox10 ENSMUST00000230532 ENSMUSP00000155574 TRANSLATION protein_coding - CCDS49668.1 - 466.0 0.0 1.6 10.3 186.3 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000033006 Sox10 ENSMUST00000040019 ENSMUSP00000039466 TRANSLATION protein_coding - CCDS49668.1 1 466.0 0.0 1.6 10.3 186.3 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000033006 Sox10 ENSMUST00000230891 - NO_TRANSLATION retained_intron ENSMUSG00000022323 Rida ENSMUST00000129426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022323 Rida ENSMUST00000125286 - NO_TRANSLATION retained_intron ENSMUSG00000022323 Rida ENSMUST00000022946 ENSMUSP00000022946 TRANSLATION protein_coding - CCDS27418.1 1 135.0 8.0 4.0 24.6 148.7 0.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000022323 Rida ENSMUST00000141154 - NO_TRANSLATION retained_intron ENSMUSG00000022240 Ctnnd2 ENSMUST00000227004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022240 Ctnnd2 ENSMUST00000081728 ENSMUSP00000080427 TRANSLATION protein_coding - CCDS27405.1 1 1246.0 0.0 5.75 5.7 121.3 0.0 -4,-7 0.9861 39 12.5 MINOR ENSMUSG00000022240 Ctnnd2 ENSMUST00000228695 - NO_TRANSLATION retained_intron ENSMUSG00000022240 Ctnnd2 ENSMUST00000226116 ENSMUSP00000154324 TRANSLATION nonsense_mediated_decay - - - 103.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000022240 Ctnnd2 ENSMUST00000228753 - NO_TRANSLATION retained_intron ENSMUSG00000022240 Ctnnd2 ENSMUST00000227065 - NO_TRANSLATION retained_intron ENSMUSG00000022240 Ctnnd2 ENSMUST00000227029 - NO_TRANSLATION retained_intron ENSMUSG00000022240 Ctnnd2 ENSMUST00000227857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022240 Ctnnd2 ENSMUST00000226797 - NO_TRANSLATION retained_intron ENSMUSG00000022240 Ctnnd2 ENSMUST00000226119 ENSMUSP00000154410 TRANSLATION protein_coding - - - 1221.0 0.0 6.5 5.4 121.3 0.0 -4,-7 1.0 37 13.872 PRINCIPAL:1 ENSMUSG00000022240 Ctnnd2 ENSMUST00000228282 ENSMUSP00000154219 TRANSLATION protein_coding stop - - 145.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022240 Ctnnd2 ENSMUST00000228827 - NO_TRANSLATION retained_intron ENSMUSG00000058099 Nfam1 ENSMUST00000100377 ENSMUSP00000097946 TRANSLATION nonsense_mediated_decay - - 1 104.0 0.0 0.0 0.0 0.0 0.0 -2,-4 0.0182 - -2.0 MINOR ENSMUSG00000058099 Nfam1 ENSMUST00000231204 ENSMUSP00000155610 TRANSLATION nonsense_mediated_decay - - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0184 - -2.0 MINOR ENSMUSG00000058099 Nfam1 ENSMUST00000109503 ENSMUSP00000105129 TRANSLATION protein_coding - CCDS27694.1 1 224.0 0.0 2.11 0.0 0.0 1.0 -4,-5 0.1543 1 4.308 MINOR ENSMUSG00000058099 Nfam1 ENSMUST00000231165 ENSMUSP00000154945 TRANSLATION protein_coding - CCDS70652.1 - 264.0 0.0 2.94 0.3 0.0 1.0 -2,-4 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000058099 Nfam1 ENSMUST00000023076 ENSMUSP00000023076 TRANSLATION protein_coding - CCDS70651.1 1 213.0 0.0 2.61 0.3 0.0 1.0 -4,-5 0.1871 1 5.328 ALTERNATIVE:2 ENSMUSG00000022299 Slc25a32 ENSMUST00000228160 ENSMUSP00000154220 TRANSLATION nonsense_mediated_decay - - - 123.0 0.0 2.198 0.0 70.9 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000022299 Slc25a32 ENSMUST00000227323 ENSMUSP00000154227 TRANSLATION protein_coding stop - - 269.0 1.0 5.88 0.0 174.2 0.0 -4,-1 0.0 6 -2.0 MINOR ENSMUSG00000022299 Slc25a32 ENSMUST00000022908 ENSMUSP00000022908 TRANSLATION protein_coding - CCDS27443.1 1 316.0 5.0 7.38 9.2 231.3 0.0 -4,-1 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000022299 Slc25a32 ENSMUST00000226144 - NO_TRANSLATION retained_intron ENSMUSG00000022297 Fzd6 ENSMUST00000228922 ENSMUSP00000154443 TRANSLATION nonsense_mediated_decay - - - 80.0 0.0 0.5 0.0 0.0 0.0 4,-1 0.0008 - -2.0 MINOR ENSMUSG00000022297 Fzd6 ENSMUST00000022906 ENSMUSP00000022906 TRANSLATION protein_coding - CCDS27441.1 1 709.0 0.0 2.3 10.3 494.8 7.0 4,-1 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000022297 Fzd6 ENSMUST00000228491 ENSMUSP00000154162 TRANSLATION nonsense_mediated_decay - - - 68.0 0.0 0.5 0.0 0.0 0.0 4,-1 0.0008 - -2.0 MINOR ENSMUSG00000022297 Fzd6 ENSMUST00000179165 ENSMUSP00000136328 TRANSLATION protein_coding - CCDS27441.1 1 709.0 0.0 2.3 10.3 494.8 7.0 4,-1 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000022297 Fzd6 ENSMUST00000227606 - NO_TRANSLATION retained_intron ENSMUSG00000051786 Tubgcp6 ENSMUST00000166480 ENSMUSP00000132108 TRANSLATION nonsense_mediated_decay start - 5 128.0 0.0 1.2 0.0 54.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000051786 Tubgcp6 ENSMUST00000169069 ENSMUSP00000132786 TRANSLATION nonsense_mediated_decay start - 5 139.0 0.0 0.9675 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000051786 Tubgcp6 ENSMUST00000168256 - NO_TRANSLATION retained_intron ENSMUSG00000051786 Tubgcp6 ENSMUST00000041656 ENSMUSP00000040132 TRANSLATION protein_coding - - 5 1761.0 0.0 6.9735 0.0 308.5 0.0 -4,-6 0.4481 9 5.784 ALTERNATIVE:2 ENSMUSG00000051786 Tubgcp6 ENSMUST00000231098 - NO_TRANSLATION retained_intron ENSMUSG00000051786 Tubgcp6 ENSMUST00000164717 - NO_TRANSLATION retained_intron ENSMUSG00000051786 Tubgcp6 ENSMUST00000166994 - NO_TRANSLATION retained_intron ENSMUSG00000051786 Tubgcp6 ENSMUST00000169208 - NO_TRANSLATION retained_intron ENSMUSG00000051786 Tubgcp6 ENSMUST00000170877 ENSMUSP00000129291 TRANSLATION nonsense_mediated_decay start - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051786 Tubgcp6 ENSMUST00000163290 ENSMUSP00000131359 TRANSLATION nonsense_mediated_decay start - 5 293.0 0.0 3.098 0.0 120.0 0.0 -4,-5 0.0004 1 -2.0 MINOR ENSMUSG00000051786 Tubgcp6 ENSMUST00000109353 ENSMUSP00000104977 TRANSLATION protein_coding - CCDS49697.1 5 1769.0 0.0 7.0824 0.1 308.4 0.0 -4,-6 1.0 9 6.0 PRINCIPAL:2 ENSMUSG00000022366 Slc22a22 ENSMUST00000022995 ENSMUSP00000022995 TRANSLATION protein_coding - CCDS27481.1 1 554.0 0.0 5.107 2.0 88.2 11.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022366 Slc22a22 ENSMUST00000137764 ENSMUSP00000123667 TRANSLATION protein_coding stop - 3 173.0 0.0 1.182 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000022366 Slc22a22 ENSMUST00000110196 ENSMUSP00000105825 TRANSLATION protein_coding - CCDS27481.1 1 554.0 0.0 5.107 2.0 88.2 11.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000033088 Triobp ENSMUST00000140228 ENSMUSP00000155397 TRANSLATION protein_coding - - 1 980.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0113 3 0.0 MINOR ENSMUSG00000033088 Triobp ENSMUST00000229943 ENSMUSP00000155796 TRANSLATION protein_coding stop - - 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033088 Triobp ENSMUST00000109689 ENSMUSP00000105311 TRANSLATION protein_coding - CCDS37137.1 1 1968.0 0.0 1.53 0.0 61.4 0.0 -4,-5 0.6482 24 8.0 ALTERNATIVE:2 ENSMUSG00000033088 Triobp ENSMUST00000229535 - NO_TRANSLATION retained_intron ENSMUSG00000033088 Triobp ENSMUST00000130663 ENSMUSP00000122988 TRANSLATION protein_coding start - 5 402.0 0.0 1.53 0.0 61.4 0.0 -4,-2 0.1002 12 -2.0 MINOR ENSMUSG00000033088 Triobp ENSMUST00000109687 ENSMUSP00000105309 TRANSLATION protein_coding - CCDS37138.1 1 627.0 0.0 1.53 0.4 61.4 0.0 -4,-7 0.3219 22 8.0 ALTERNATIVE:2 ENSMUSG00000033088 Triobp ENSMUST00000229270 ENSMUSP00000155650 TRANSLATION protein_coding start/stop - - 248.0 0.0 1.53 0.0 61.4 0.0 -4,-5 0.052 4 -2.0 MINOR ENSMUSG00000033088 Triobp ENSMUST00000137934 - NO_TRANSLATION retained_intron ENSMUSG00000033088 Triobp ENSMUST00000109688 - NO_TRANSLATION retained_intron ENSMUSG00000033088 Triobp ENSMUST00000109690 ENSMUSP00000105312 TRANSLATION protein_coding - CCDS37136.1 1 2014.0 0.0 1.53 0.0 61.4 0.0 -4,-5 1.0 24 8.0 PRINCIPAL:2 ENSMUSG00000033088 Triobp ENSMUST00000129922 - NO_TRANSLATION retained_intron ENSMUSG00000033088 Triobp ENSMUST00000144151 ENSMUSP00000116765 TRANSLATION protein_coding stop - 3 98.0 0.0 1.432 0.0 59.2 0.0 -4,-5 0.0217 3 -2.0 MINOR ENSMUSG00000061633 Ndufb11b ENSMUST00000074608 ENSMUSP00000074190 TRANSLATION protein_coding - CCDS37152.1 - 150.0 0.0 1.0 6.6 145.9 0.0 1,4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000022283 Pabpc1 ENSMUST00000147116 - NO_TRANSLATION retained_intron ENSMUSG00000022283 Pabpc1 ENSMUST00000155116 ENSMUSP00000117063 TRANSLATION protein_coding start - 3 118.0 0.0 3.25 0.0 113.6 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000022283 Pabpc1 ENSMUST00000156793 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022283 Pabpc1 ENSMUST00000226830 - NO_TRANSLATION retained_intron ENSMUSG00000022283 Pabpc1 ENSMUST00000001809 ENSMUSP00000001809 TRANSLATION protein_coding - CCDS27431.1 1 636.0 0.0 12.25 32.4 416.9 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000022283 Pabpc1 ENSMUST00000146577 - NO_TRANSLATION retained_intron ENSMUSG00000022283 Pabpc1 ENSMUST00000146327 - NO_TRANSLATION retained_intron ENSMUSG00000022283 Pabpc1 ENSMUST00000142357 - NO_TRANSLATION retained_intron ENSMUSG00000022283 Pabpc1 ENSMUST00000226496 ENSMUSP00000154430 TRANSLATION protein_coding stop - - 126.0 0.0 2.0 0.0 75.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022283 Pabpc1 ENSMUST00000226867 - NO_TRANSLATION retained_intron ENSMUSG00000023044 Csad ENSMUST00000230665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023044 Csad ENSMUST00000231029 ENSMUSP00000155282 TRANSLATION protein_coding start - - 107.0 1.0 2.15 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000230895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023044 Csad ENSMUST00000230342 ENSMUSP00000155558 TRANSLATION nonsense_mediated_decay start - - 60.0 3.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000230708 ENSMUSP00000155265 TRANSLATION nonsense_mediated_decay start - - 135.0 8.0 4.0 0.0 117.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000230656 ENSMUSP00000155633 TRANSLATION protein_coding stop - - 119.0 3.0 3.58 0.0 43.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000230322 ENSMUSP00000155715 TRANSLATION nonsense_mediated_decay - - - 174.0 3.0 5.28 0.0 72.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000229345 ENSMUSP00000155560 TRANSLATION protein_coding stop - - 64.0 0.0 2.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000229938 ENSMUSP00000155645 TRANSLATION nonsense_mediated_decay - - - 45.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000230328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023044 Csad ENSMUST00000229470 ENSMUSP00000155756 TRANSLATION protein_coding stop - - 150.0 3.0 4.66 0.0 72.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000229514 ENSMUSP00000155067 TRANSLATION protein_coding stop - - 162.0 6.0 5.16 0.0 87.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000230644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023044 Csad ENSMUST00000229252 ENSMUSP00000154991 TRANSLATION protein_coding stop - - 69.0 0.0 2.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000230253 - NO_TRANSLATION retained_intron ENSMUSG00000023044 Csad ENSMUST00000229043 ENSMUSP00000155509 TRANSLATION protein_coding stop - - 189.0 6.0 6.08 0.0 93.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000231030 ENSMUSP00000155394 TRANSLATION protein_coding stop - - 150.0 3.0 4.66 0.0 72.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000230687 ENSMUSP00000155153 TRANSLATION protein_coding stop - - 210.0 7.0 6.83 0.0 109.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000231048 ENSMUSP00000155192 TRANSLATION nonsense_mediated_decay - - - 232.0 7.0 6.65375 0.0 94.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000023044 Csad ENSMUST00000230008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023044 Csad ENSMUST00000023805 ENSMUSP00000023805 TRANSLATION protein_coding - CCDS27873.1 1 493.0 17.0 14.08 17.2 371.7 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000023044 Csad ENSMUST00000230288 ENSMUSP00000155492 TRANSLATION protein_coding - - - 463.0 17.0 13.08 1.0 356.8 0.0 -4,-5 0.0252 14 15.108 MINOR ENSMUSG00000023044 Csad ENSMUST00000229770 ENSMUSP00000155075 TRANSLATION protein_coding stop - - 35.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022201 Zfr ENSMUST00000140787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022201 Zfr ENSMUST00000134277 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022201 Zfr ENSMUST00000122941 ENSMUSP00000118911 TRANSLATION protein_coding - CCDS37044.2 1 1074.0 6.0 7.7 16.7 322.0 0.0 -4,-6 1.0 31 22.0 PRINCIPAL:1 ENSMUSG00000022201 Zfr ENSMUST00000156752 ENSMUSP00000119251 TRANSLATION protein_coding start/stop - 5 299.0 4.0 6.93 0.0 223.7 0.0 -4,-5 0.0019 12 -2.0 MINOR ENSMUSG00000022201 Zfr ENSMUST00000157034 ENSMUSP00000119524 TRANSLATION nonsense_mediated_decay start - 5 44.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022201 Zfr ENSMUST00000228196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022201 Zfr ENSMUST00000124621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022201 Zfr ENSMUST00000147492 - NO_TRANSLATION retained_intron ENSMUSG00000022201 Zfr ENSMUST00000155054 ENSMUSP00000114992 TRANSLATION nonsense_mediated_decay start - 3 115.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000022201 Zfr ENSMUST00000128475 ENSMUSP00000117207 TRANSLATION non_stop_decay stop - 3 351.0 3.0 0.0 0.0 22.9 0.0 -4,-6 0.0008 5 -2.0 MINOR ENSMUSG00000022489 Pde1b ENSMUST00000226468 ENSMUSP00000153865 TRANSLATION nonsense_mediated_decay - - - 458.0 6.0 8.5 0.0 389.8 0.0 -4,-5 0.0377 12 -2.0 MINOR ENSMUSG00000022489 Pde1b ENSMUST00000227925 - NO_TRANSLATION retained_intron ENSMUSG00000022489 Pde1b ENSMUST00000227955 ENSMUSP00000153722 TRANSLATION protein_coding - - - 516.0 6.0 8.1 10.3 389.8 0.0 -4,-2 0.9584 12 16.202 ALTERNATIVE:1 ENSMUSG00000022489 Pde1b ENSMUST00000226493 ENSMUSP00000154483 TRANSLATION protein_coding stop - - 192.0 0.0 1.75 0.0 107.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000022489 Pde1b ENSMUST00000023132 ENSMUSP00000023132 TRANSLATION protein_coding - CCDS27904.1 1 535.0 6.0 8.1 8.7 389.8 0.0 -4,-5 1.0 12 15.686 PRINCIPAL:4 ENSMUSG00000015002 Efr3a ENSMUST00000172756 ENSMUSP00000134683 TRANSLATION protein_coding - - 1 174.0 0.0 0.51 0.0 0.0 0.0 -4,-2 0.0594 5 6.0 MINOR ENSMUSG00000015002 Efr3a ENSMUST00000173936 - NO_TRANSLATION retained_intron ENSMUSG00000015002 Efr3a ENSMUST00000174615 - NO_TRANSLATION retained_intron ENSMUSG00000015002 Efr3a ENSMUST00000227340 ENSMUSP00000154465 TRANSLATION protein_coding start - - 112.0 0.0 0.0 0.0 0.0 0.0 -2,-2 0.0224 2 -2.0 MINOR ENSMUSG00000015002 Efr3a ENSMUST00000096411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015002 Efr3a ENSMUST00000173858 ENSMUSP00000134385 TRANSLATION protein_coding - - 1 821.0 0.0 0.51 0.0 0.0 0.0 -4,-2 0.2276 19 6.0 MINOR ENSMUSG00000015002 Efr3a ENSMUST00000211878 ENSMUSP00000148418 TRANSLATION protein_coding - - 5 846.0 0.0 0.51 4.0 0.0 0.0 -4,-5 0.2694 19 6.416 MINOR ENSMUSG00000015002 Efr3a ENSMUST00000174601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015002 Efr3a ENSMUST00000174135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015002 Efr3a ENSMUST00000174591 - NO_TRANSLATION retained_intron ENSMUSG00000015002 Efr3a ENSMUST00000173008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015002 Efr3a ENSMUST00000015146 ENSMUSP00000015146 TRANSLATION protein_coding - CCDS27507.1 1 819.0 0.0 0.51 29.9 0.0 0.0 -4,-2 1.0 19 10.0 PRINCIPAL:1 ENSMUSG00000015002 Efr3a ENSMUST00000174856 ENSMUSP00000133493 TRANSLATION protein_coding stop - 2 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0145 - -2.0 MINOR ENSMUSG00000015002 Efr3a ENSMUST00000174749 - NO_TRANSLATION retained_intron ENSMUSG00000068101 Cenpm ENSMUST00000089155 ENSMUSP00000086558 TRANSLATION protein_coding - CCDS37156.1 1 168.0 0.0 3.5 0.3 165.9 0.0 -4,-7 0.0054 - 2.502 MINOR ENSMUSG00000068101 Cenpm ENSMUST00000089157 ENSMUSP00000086560 TRANSLATION protein_coding - CCDS27685.1 1 180.0 0.0 5.25 10.2 267.8 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068101 Cenpm ENSMUST00000230408 ENSMUSP00000155788 TRANSLATION protein_coding stop - - 116.0 0.0 3.75 0.0 175.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068101 Cenpm ENSMUST00000229041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068101 Cenpm ENSMUST00000229505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068101 Cenpm ENSMUST00000229747 ENSMUSP00000155143 TRANSLATION protein_coding stop - - 69.0 0.0 2.25 1.0 108.5 0.0 -4,-6 0.013 - -2.0 MINOR ENSMUSG00000039828 Wdr70 ENSMUST00000226928 - NO_TRANSLATION retained_intron ENSMUSG00000039828 Wdr70 ENSMUST00000227371 ENSMUSP00000154067 TRANSLATION protein_coding - - - 87.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.0484 - 0.213 MINOR ENSMUSG00000039828 Wdr70 ENSMUST00000045766 ENSMUSP00000037340 TRANSLATION protein_coding - CCDS37033.1 1 657.0 0.0 10.8 8.0 50.0 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000022382 Wnt7b ENSMUST00000230299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022382 Wnt7b ENSMUST00000023015 ENSMUSP00000023015 TRANSLATION protein_coding - - 1 356.0 0.0 2.1 0.0 345.4 0.0 -4,-7 0.0155 2 2.202 MINOR ENSMUSG00000022382 Wnt7b ENSMUST00000229495 ENSMUSP00000155817 TRANSLATION protein_coding - CCDS49691.1 - 282.0 0.0 3.0 7.5 386.9 0.0 -4,-5 0.2594 2 4.81 MINOR ENSMUSG00000022382 Wnt7b ENSMUST00000229191 ENSMUSP00000155014 TRANSLATION protein_coding - CCDS49692.1 - 353.0 0.0 4.0 30.1 416.2 0.0 -1,-4 0.9676 2 11.616 ALTERNATIVE:1 ENSMUSG00000022382 Wnt7b ENSMUST00000167968 ENSMUSP00000130627 TRANSLATION protein_coding - CCDS49691.1 1 282.0 0.0 3.0 7.5 386.9 0.0 -4,-5 0.2594 2 4.81 MINOR ENSMUSG00000022382 Wnt7b ENSMUST00000109424 ENSMUSP00000105051 TRANSLATION protein_coding - CCDS37171.1 1 349.0 0.0 4.0 33.2 416.2 0.0 -1,-5 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000022445 Cyp2d26 ENSMUST00000229512 ENSMUSP00000155850 TRANSLATION nonsense_mediated_decay - - - 95.0 0.0 2.08 0.0 42.1 1.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000022445 Cyp2d26 ENSMUST00000229387 ENSMUSP00000155717 TRANSLATION nonsense_mediated_decay - - - 92.0 0.0 1.0 0.0 0.0 1.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000022445 Cyp2d26 ENSMUST00000006094 ENSMUSP00000006094 TRANSLATION protein_coding - CCDS37163.1 1 500.0 34.0 9.91 9.1 463.1 1.0 -2,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000022445 Cyp2d26 ENSMUST00000230125 - NO_TRANSLATION retained_intron ENSMUSG00000044636 Csrnp2 ENSMUST00000061457 ENSMUSP00000052144 TRANSLATION protein_coding - CCDS27839.1 1 534.0 8.0 0.0 6.9 342.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060794 Tssk5 ENSMUST00000227223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060794 Tssk5 ENSMUST00000230436 - NO_TRANSLATION retained_intron ENSMUSG00000060794 Tssk5 ENSMUST00000071119 ENSMUSP00000071120 TRANSLATION protein_coding - CCDS37122.1 1 372.0 18.0 4.1 0.1 190.6 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033837 Foxh1 ENSMUST00000037824 ENSMUSP00000036591 TRANSLATION protein_coding - CCDS27584.1 1 401.0 0.0 1.2 0.1 85.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033837 Foxh1 ENSMUST00000230207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061397 Krt79 ENSMUST00000229195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061397 Krt79 ENSMUST00000023799 ENSMUSP00000023799 TRANSLATION protein_coding - CCDS27867.1 1 531.0 0.0 4.85 9.0 426.8 0.0 -4,0 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000061397 Krt79 ENSMUST00000230273 - NO_TRANSLATION retained_intron ENSMUSG00000061397 Krt79 ENSMUST00000230441 - NO_TRANSLATION retained_intron ENSMUSG00000032501 Trib1 ENSMUST00000118228 ENSMUSP00000112828 TRANSLATION protein_coding - - 1 218.0 0.0 1.5 0.0 34.6 0.0 -4,0 0.0 - 4.968 MINOR ENSMUSG00000032501 Trib1 ENSMUST00000067543 ENSMUSP00000068834 TRANSLATION protein_coding - CCDS27499.1 1 372.0 0.0 2.5 9.6 111.8 0.0 -4,0 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039458 Mtmr12 ENSMUST00000174418 ENSMUSP00000133285 TRANSLATION nonsense_mediated_decay - - 1 159.0 0.0 0.68 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000039458 Mtmr12 ENSMUST00000038172 ENSMUSP00000041227 TRANSLATION protein_coding - CCDS27388.1 1 747.0 0.0 3.4175 0.0 304.6 0.0 -4,-6 1.0 13 11.196 PRINCIPAL:1 ENSMUSG00000039458 Mtmr12 ENSMUST00000173071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039458 Mtmr12 ENSMUST00000071993 ENSMUSP00000071883 TRANSLATION protein_coding - - 1 437.0 0.0 2.6185 0.0 296.4 0.0 -4,-7 0.0175 8 9.108 MINOR ENSMUSG00000039458 Mtmr12 ENSMUST00000174160 ENSMUSP00000134293 TRANSLATION nonsense_mediated_decay - - 1 526.0 0.0 3.819 0.0 169.8 0.0 -4,-6 0.0455 7 -2.0 MINOR ENSMUSG00000053411 Cbx7 ENSMUST00000146719 ENSMUSP00000120748 TRANSLATION protein_coding start - 3 180.0 0.0 3.146 0.0 91.5 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000053411 Cbx7 ENSMUST00000089293 ENSMUSP00000086708 TRANSLATION protein_coding - - 1 251.0 0.0 3.896 10.1 102.4 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000053411 Cbx7 ENSMUST00000177061 - NO_TRANSLATION retained_intron ENSMUSG00000053411 Cbx7 ENSMUST00000177044 ENSMUSP00000135246 TRANSLATION protein_coding stop - 5 121.0 0.0 2.0 0.0 32.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053411 Cbx7 ENSMUST00000176639 - NO_TRANSLATION retained_intron ENSMUSG00000053411 Cbx7 ENSMUST00000109615 ENSMUSP00000105244 TRANSLATION protein_coding - CCDS37143.1 1 158.0 0.0 3.896 5.0 102.4 0.0 -4,-5 0.7542 1 13.32 MINOR ENSMUSG00000053411 Cbx7 ENSMUST00000109616 ENSMUSP00000105245 TRANSLATION protein_coding - CCDS37143.1 1 158.0 0.0 3.896 5.0 102.4 0.0 -4,-5 0.7542 1 13.32 MINOR ENSMUSG00000053411 Cbx7 ENSMUST00000132821 ENSMUSP00000118871 TRANSLATION protein_coding stop - 5 61.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053411 Cbx7 ENSMUST00000128931 ENSMUSP00000118813 TRANSLATION protein_coding stop - 5 106.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000016942 Tmprss6 ENSMUST00000230159 ENSMUSP00000155549 TRANSLATION protein_coding - - - 581.0 18.0 2.575 0.0 108.4 2.0 -4,-6 0.0016 3 3.598 MINOR ENSMUSG00000016942 Tmprss6 ENSMUST00000230473 - NO_TRANSLATION retained_intron ENSMUSG00000016942 Tmprss6 ENSMUST00000230020 ENSMUSP00000155435 TRANSLATION protein_coding start/stop - - 98.0 1.0 1.0 0.0 25.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000016942 Tmprss6 ENSMUST00000017086 ENSMUSP00000017086 TRANSLATION protein_coding - CCDS37133.1 1 811.0 24.0 7.948 0.1 356.4 2.0 -4,-6 0.5332 4 14.0 ALTERNATIVE:2 ENSMUSG00000016942 Tmprss6 ENSMUST00000230226 ENSMUSP00000155401 TRANSLATION protein_coding - - - 799.0 24.0 7.948 2.1 356.4 2.0 -4,-5 1.0 4 15.0 PRINCIPAL:2 ENSMUSG00000016942 Tmprss6 ENSMUST00000229516 ENSMUSP00000155355 TRANSLATION protein_coding - - - 594.0 18.0 2.575 0.0 108.4 2.0 -4,-6 0.0021 3 3.598 MINOR ENSMUSG00000016942 Tmprss6 ENSMUST00000229124 ENSMUSP00000155414 TRANSLATION protein_coding stop - - 121.0 11.0 1.478 0.0 33.3 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000036606 Plxnb2 ENSMUST00000230393 - NO_TRANSLATION retained_intron ENSMUSG00000036606 Plxnb2 ENSMUST00000060808 ENSMUSP00000051731 TRANSLATION protein_coding - CCDS49698.1 5 1842.0 0.0 18.972 4.7 1101.5 1.0 3,-2 1.0 40 14.0 PRINCIPAL:1 ENSMUSG00000036606 Plxnb2 ENSMUST00000131062 - NO_TRANSLATION retained_intron ENSMUSG00000036606 Plxnb2 ENSMUST00000229966 - NO_TRANSLATION retained_intron ENSMUSG00000036606 Plxnb2 ENSMUST00000109331 ENSMUSP00000104955 TRANSLATION protein_coding - CCDS49698.1 5 1842.0 0.0 18.972 4.7 1101.5 1.0 3,-2 1.0 40 14.0 PRINCIPAL:1 ENSMUSG00000036606 Plxnb2 ENSMUST00000139372 - NO_TRANSLATION retained_intron ENSMUSG00000036606 Plxnb2 ENSMUST00000143014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036606 Plxnb2 ENSMUST00000151418 - NO_TRANSLATION retained_intron ENSMUSG00000072568 Lratd2 ENSMUST00000186536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072568 Lratd2 ENSMUST00000100635 ENSMUSP00000098200 TRANSLATION protein_coding - CCDS49613.1 1 310.0 0.0 0.5 0.0 52.7 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000079018 Ly6c1 ENSMUST00000187347 ENSMUSP00000139799 TRANSLATION protein_coding - CCDS27541.1 2 131.0 0.0 2.0 0.1 55.7 0.0 2,-2 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000079018 Ly6c1 ENSMUST00000191216 ENSMUSP00000140722 TRANSLATION protein_coding stop - 5 111.0 0.0 2.0 0.0 55.7 0.0 2,-2 0.1094 1 -2.0 MINOR ENSMUSG00000079018 Ly6c1 ENSMUST00000179762 ENSMUSP00000137401 TRANSLATION protein_coding - CCDS27541.1 1 131.0 0.0 2.0 0.1 55.7 0.0 2,-2 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000079018 Ly6c1 ENSMUST00000065408 ENSMUSP00000066954 TRANSLATION protein_coding - CCDS27541.1 1 131.0 0.0 2.0 0.1 55.7 0.0 2,-2 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000079018 Ly6c1 ENSMUST00000185372 ENSMUSP00000139948 TRANSLATION protein_coding stop - 3 78.0 0.0 1.0 0.0 28.8 0.0 3,-2 0.003 - -2.0 MINOR ENSMUSG00000079018 Ly6c1 ENSMUST00000185200 ENSMUSP00000140622 TRANSLATION protein_coding - CCDS79376.1 2 81.0 0.0 1.0 0.0 28.8 0.0 3,-2 0.0512 - 3.0 MINOR ENSMUSG00000079018 Ly6c1 ENSMUST00000188845 ENSMUSP00000139559 TRANSLATION protein_coding - CCDS79375.1 3 147.0 0.0 2.0 0.0 55.7 0.0 2,-2 0.3806 1 8.0 ALTERNATIVE:2 ENSMUSG00000022340 Sybu ENSMUST00000228639 ENSMUSP00000153979 TRANSLATION protein_coding - - - 135.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000022340 Sybu ENSMUST00000090057 ENSMUSP00000087511 TRANSLATION protein_coding - CCDS37069.1 1 793.0 0.0 1.2 0.0 465.0 0.0 -4,-7 0.351 9 8.0 MINOR ENSMUSG00000022340 Sybu ENSMUST00000110267 ENSMUSP00000105896 TRANSLATION protein_coding - CCDS37071.1 1 665.0 0.0 1.2 5.2 465.0 0.0 -4,-7 1.0 9 9.714 PRINCIPAL:4 ENSMUSG00000022340 Sybu ENSMUST00000226825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022340 Sybu ENSMUST00000227081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022340 Sybu ENSMUST00000228057 ENSMUSP00000153759 TRANSLATION protein_coding - CCDS37071.1 - 665.0 0.0 1.2 5.2 465.0 0.0 -4,-7 1.0 9 9.714 PRINCIPAL:4 ENSMUSG00000022340 Sybu ENSMUST00000227305 ENSMUSP00000154372 TRANSLATION protein_coding - - - 664.0 0.0 1.2 5.9 465.0 0.0 -4,-6 0.8505 9 10.0 ALTERNATIVE:1 ENSMUSG00000022340 Sybu ENSMUST00000226214 ENSMUSP00000154431 TRANSLATION nonsense_mediated_decay - - - 119.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000022340 Sybu ENSMUST00000110269 ENSMUSP00000105898 TRANSLATION protein_coding - CCDS37070.1 1 593.0 0.0 1.2 0.0 465.0 0.0 -4,-5 0.2654 9 8.0 MINOR ENSMUSG00000023272 Creld2 ENSMUST00000024042 ENSMUSP00000024042 TRANSLATION protein_coding - CCDS27733.1 1 350.0 12.0 8.1 2.0 82.7 0.0 3,-2 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000038591 Colec10 ENSMUST00000036737 ENSMUSP00000037867 TRANSLATION protein_coding - CCDS27469.1 1 277.0 9.0 2.25 15.3 90.1 0.0 3,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000059895 Ptp4a3 ENSMUST00000230864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059895 Ptp4a3 ENSMUST00000230307 ENSMUSP00000155324 TRANSLATION protein_coding stop - - 35.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000059895 Ptp4a3 ENSMUST00000163582 ENSMUSP00000131281 TRANSLATION protein_coding - CCDS27519.1 1 173.0 10.0 4.75 32.1 29.6 0.0 -4,0 1.0 6 21.88 PRINCIPAL:1 ENSMUSG00000059895 Ptp4a3 ENSMUST00000165541 ENSMUSP00000132097 TRANSLATION protein_coding - CCDS27519.1 5 173.0 10.0 4.75 32.1 29.6 0.0 -4,0 1.0 6 21.88 PRINCIPAL:1 ENSMUSG00000059895 Ptp4a3 ENSMUST00000229339 - NO_TRANSLATION retained_intron ENSMUSG00000059895 Ptp4a3 ENSMUST00000167582 ENSMUSP00000131036 TRANSLATION protein_coding - - 5 154.0 10.0 3.85 2.2 30.2 0.0 -4,-5 0.1219 6 16.356 MINOR ENSMUSG00000059895 Ptp4a3 ENSMUST00000053232 ENSMUSP00000060956 TRANSLATION protein_coding - CCDS27519.1 1 173.0 10.0 4.75 32.1 29.6 0.0 -4,0 1.0 6 21.88 PRINCIPAL:1 ENSMUSG00000059895 Ptp4a3 ENSMUST00000230177 ENSMUSP00000154829 TRANSLATION protein_coding - CCDS27519.1 - 173.0 10.0 4.75 32.1 29.6 0.0 -4,0 1.0 6 21.88 PRINCIPAL:1 ENSMUSG00000059895 Ptp4a3 ENSMUST00000230044 ENSMUSP00000155312 TRANSLATION protein_coding stop - - 35.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000059895 Ptp4a3 ENSMUST00000231209 ENSMUSP00000155773 TRANSLATION protein_coding stop - - 35.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000023027 Atf1 ENSMUST00000165804 ENSMUSP00000127969 TRANSLATION protein_coding stop - 5 76.0 0.0 0.93 0.0 58.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023027 Atf1 ENSMUST00000166809 - NO_TRANSLATION retained_intron ENSMUSG00000023027 Atf1 ENSMUST00000169408 ENSMUSP00000129833 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023027 Atf1 ENSMUST00000171869 ENSMUSP00000131278 TRANSLATION protein_coding stop - 3 67.0 0.0 0.6 0.0 44.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023027 Atf1 ENSMUST00000023769 ENSMUSP00000023769 TRANSLATION protein_coding - CCDS27832.1 1 269.0 0.0 2.93 9.2 140.9 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000023027 Atf1 ENSMUST00000168103 ENSMUSP00000155718 TRANSLATION nonsense_mediated_decay start - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023027 Atf1 ENSMUST00000172154 ENSMUSP00000132907 TRANSLATION protein_coding stop - 3 178.0 0.0 0.93 0.0 66.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023027 Atf1 ENSMUST00000166435 ENSMUSP00000127985 TRANSLATION protein_coding start - 5 100.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023027 Atf1 ENSMUST00000163855 ENSMUSP00000126491 TRANSLATION protein_coding stop - 5 107.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000078937 Cpt1b ENSMUST00000168376 ENSMUSP00000129786 TRANSLATION protein_coding stop - 3 54.0 0.0 1.33 0.0 98.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000078937 Cpt1b ENSMUST00000168879 ENSMUSP00000128188 TRANSLATION nonsense_mediated_decay start - 3 151.0 3.0 3.248 0.0 119.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000078937 Cpt1b ENSMUST00000165419 - NO_TRANSLATION retained_intron ENSMUSG00000078937 Cpt1b ENSMUST00000109313 ENSMUSP00000104936 TRANSLATION protein_coding - CCDS27749.1 1 772.0 27.0 18.36 14.6 743.9 0.0 -4,-7 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000036197 Gxylt1 ENSMUST00000049484 ENSMUSP00000047281 TRANSLATION protein_coding - CCDS27764.1 1 372.0 5.0 4.8 0.0 32.1 0.0 0,-4 0.0842 2 15.8 MINOR ENSMUSG00000036197 Gxylt1 ENSMUST00000230063 ENSMUSP00000155854 TRANSLATION protein_coding - - - 404.0 5.0 5.4 5.7 32.1 0.0 0,-4 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000036197 Gxylt1 ENSMUST00000057896 ENSMUSP00000081947 TRANSLATION protein_coding - CCDS84189.1 5 435.0 5.0 5.4 0.0 32.1 0.0 0,-4 0.1929 3 17.0 MINOR ENSMUSG00000115798 Gm55359 ENSMUST00000226485 ENSMUSP00000154304 TRANSLATION protein_coding - - - 70.0 0.0 1.0 8.5 44.6 0.0 -4,-1 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000052414 Gm28047 ENSMUST00000184772 ENSMUSP00000138975 TRANSLATION nonsense_mediated_decay,RT - - 2 414.0 3.0 3.5 0.0 47.0 0.0 -4,-5 0.7463 - -2.0 PRINCIPAL:1 ENSMUSG00000053469 Tg ENSMUST00000166403 ENSMUSP00000155392 TRANSLATION protein_coding - - 1 367.0 0.0 6.1 0.0 178.8 0.0 -4,-7 0.0 13 0.0 MINOR ENSMUSG00000053469 Tg ENSMUST00000065916 ENSMUSP00000070239 TRANSLATION protein_coding - CCDS37091.1 1 2766.0 0.0 36.16 0.1 913.6 0.0 3,-2 1.0 81 12.0 PRINCIPAL:1 ENSMUSG00000053469 Tg ENSMUST00000171045 ENSMUSP00000126454 TRANSLATION protein_coding - - 5 1147.0 0.0 18.65 0.0 447.9 0.0 -4,-5 0.0078 31 0.0 MINOR ENSMUSG00000053469 Tg ENSMUST00000172153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053469 Tg ENSMUST00000163495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053469 Tg ENSMUST00000167512 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053469 Tg ENSMUST00000167344 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022414 Tab1 ENSMUST00000229320 ENSMUSP00000155204 TRANSLATION nonsense_mediated_decay start - - 105.0 0.0 0.0 0.0 0.0 0.0 -2,0 0.0004 - -2.0 MINOR ENSMUSG00000022414 Tab1 ENSMUST00000023050 ENSMUSP00000023050 TRANSLATION protein_coding - CCDS27659.1 1 502.0 3.0 9.05 15.9 138.0 0.0 -4,-6 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000022414 Tab1 ENSMUST00000230479 - NO_TRANSLATION retained_intron ENSMUSG00000063765 Chadl ENSMUST00000230849 - NO_TRANSLATION retained_intron ENSMUSG00000063765 Chadl ENSMUST00000173898 ENSMUSP00000133981 TRANSLATION nonsense_mediated_decay start - 1 256.0 0.0 1.765 0.0 97.8 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000063765 Chadl ENSMUST00000173598 ENSMUSP00000133834 TRANSLATION nonsense_mediated_decay start - 1 282.0 0.0 2.232 0.0 140.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000063765 Chadl ENSMUST00000072910 ENSMUSP00000072682 TRANSLATION protein_coding - CCDS49677.1 5 748.0 0.0 4.032 0.0 287.9 0.0 4,-1 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000019080 Mfsd3 ENSMUST00000229018 - NO_TRANSLATION retained_intron ENSMUSG00000019080 Mfsd3 ENSMUST00000229098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019080 Mfsd3 ENSMUST00000019224 ENSMUSP00000019224 TRANSLATION protein_coding - CCDS27587.1 1 412.0 0.0 0.0 9.0 49.5 0.0 -1,-3 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000019080 Mfsd3 ENSMUST00000230468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023046 Igfbp6 ENSMUST00000023807 ENSMUSP00000023807 TRANSLATION protein_coding - CCDS27871.1 1 238.0 0.0 2.6 0.0 61.1 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000048755 Mcat ENSMUST00000229724 ENSMUSP00000155738 TRANSLATION protein_coding stop - - 116.0 3.0 2.41 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000048755 Mcat ENSMUST00000061882 ENSMUSP00000051569 TRANSLATION protein_coding - CCDS27704.1 1 381.0 6.0 6.16 1.2 79.3 0.0 -4,0 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000048755 Mcat ENSMUST00000230094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048755 Mcat ENSMUST00000230851 ENSMUSP00000155224 TRANSLATION protein_coding start - - 71.0 2.0 2.08 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000048755 Mcat ENSMUST00000230672 ENSMUSP00000155428 TRANSLATION protein_coding start/stop - - 129.0 1.0 2.1 0.0 36.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000048755 Mcat ENSMUST00000229177 - NO_TRANSLATION retained_intron ENSMUSG00000045608 Dbx2 ENSMUST00000054244 ENSMUSP00000060424 TRANSLATION protein_coding - CCDS37183.1 1 377.0 0.0 1.4 0.1 72.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045608 Dbx2 ENSMUST00000229611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022441 Efcab6 ENSMUST00000140633 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022441 Efcab6 ENSMUST00000144169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022441 Efcab6 ENSMUST00000149563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022441 Efcab6 ENSMUST00000122836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022441 Efcab6 ENSMUST00000130551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022441 Efcab6 ENSMUST00000163773 ENSMUSP00000128002 TRANSLATION nonsense_mediated_decay start - 5 70.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022441 Efcab6 ENSMUST00000156187 ENSMUSP00000114909 TRANSLATION protein_coding - CCDS27707.2 1 1516.0 15.0 2.06 0.1 284.8 0.0 -4,-2 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000022441 Efcab6 ENSMUST00000143592 - NO_TRANSLATION retained_intron ENSMUSG00000016624 Phf21b ENSMUST00000162996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016624 Phf21b ENSMUST00000162044 ENSMUSP00000124941 TRANSLATION nonsense_mediated_decay - - 1 294.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000016624 Phf21b ENSMUST00000159939 ENSMUSP00000125355 TRANSLATION protein_coding - CCDS37169.2 1 487.0 8.0 1.315 9.7 32.6 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000016624 Phf21b ENSMUST00000016768 ENSMUSP00000016768 TRANSLATION protein_coding - - 1 475.0 8.0 1.315 4.3 32.6 0.0 -4,-2 0.6111 - 19.137 MINOR ENSMUSG00000016624 Phf21b ENSMUST00000160389 - NO_TRANSLATION retained_intron ENSMUSG00000016624 Phf21b ENSMUST00000159502 - NO_TRANSLATION retained_intron ENSMUSG00000051793 Or8s5 ENSMUST00000206647 ENSMUSP00000145864 TRANSLATION protein_coding - - - 321.0 0.0 1.0 1.1 182.0 8.0 -2,-5 0.2458 - 12.03 MINOR ENSMUSG00000051793 Or8s5 ENSMUST00000063289 ENSMUSP00000065626 TRANSLATION protein_coding - CCDS27791.1 - 305.0 0.0 1.0 11.1 182.0 8.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022490 Ppp1r1a ENSMUST00000228813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022490 Ppp1r1a ENSMUST00000023133 ENSMUSP00000023133 TRANSLATION protein_coding - CCDS37237.1 1 171.0 0.0 0.0 0.0 138.3 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000023048 Prr13 ENSMUST00000164957 ENSMUSP00000125784 TRANSLATION protein_coding - CCDS27883.1 1 137.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.839 - 0.0 PRINCIPAL:1 ENSMUSG00000023048 Prr13 ENSMUST00000164688 ENSMUSP00000130498 TRANSLATION protein_coding - CCDS27883.1 1 137.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.839 - 0.0 PRINCIPAL:1 ENSMUSG00000023048 Prr13 ENSMUST00000023810 ENSMUSP00000023810 TRANSLATION protein_coding - CCDS27883.1 1 137.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.839 - 0.0 PRINCIPAL:1 ENSMUSG00000023048 Prr13 ENSMUST00000164938 ENSMUSP00000129218 TRANSLATION protein_coding stop - 2 79.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0156 - -2.0 MINOR ENSMUSG00000023048 Prr13 ENSMUST00000171245 ENSMUSP00000132636 TRANSLATION protein_coding - CCDS27883.1 1 137.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.839 - 0.0 PRINCIPAL:1 ENSMUSG00000023047 Amhr2 ENSMUST00000161376 - NO_TRANSLATION retained_intron ENSMUSG00000023047 Amhr2 ENSMUST00000162893 ENSMUSP00000123735 TRANSLATION protein_coding start - 5 190.0 4.0 2.19 0.0 29.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000023047 Amhr2 ENSMUST00000229566 ENSMUSP00000155001 TRANSLATION protein_coding stop - - 61.0 3.0 0.0 0.0 21.2 0.0 1,-3 0.0 - -2.0 MINOR ENSMUSG00000023047 Amhr2 ENSMUST00000023809 ENSMUSP00000023809 TRANSLATION protein_coding - CCDS27882.1 1 568.0 21.0 4.45 0.0 107.0 1.0 2,-3 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000023047 Amhr2 ENSMUST00000229278 ENSMUSP00000154968 TRANSLATION protein_coding - - - 448.0 21.0 3.35 0.0 95.0 1.0 2,-3 0.0172 1 15.078 MINOR ENSMUSG00000034022 Cpsf1 ENSMUST00000229269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034022 Cpsf1 ENSMUST00000230903 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000231042 ENSMUSP00000155098 TRANSLATION nonsense_mediated_decay - - - 89.0 0.0 1.132 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034022 Cpsf1 ENSMUST00000071898 ENSMUSP00000071794 TRANSLATION protein_coding - CCDS27577.1 1 1441.0 0.0 18.251 12.1 307.2 0.0 -4,-5 1.0 30 15.0 PRINCIPAL:1 ENSMUSG00000034022 Cpsf1 ENSMUST00000229367 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000229797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034022 Cpsf1 ENSMUST00000229798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034022 Cpsf1 ENSMUST00000231191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034022 Cpsf1 ENSMUST00000229437 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000231037 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000229504 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000229982 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000230149 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000230822 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000231009 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000229015 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000230157 ENSMUSP00000155308 TRANSLATION protein_coding - - - 1450.0 0.0 17.591 0.0 307.2 0.0 -4,-5 0.2535 30 10.68 MINOR ENSMUSG00000034022 Cpsf1 ENSMUST00000230557 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000229447 - NO_TRANSLATION retained_intron ENSMUSG00000034022 Cpsf1 ENSMUST00000229287 ENSMUSP00000155746 TRANSLATION protein_coding start - - 121.0 0.0 3.16 0.0 64.7 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000023007 Prpf40b ENSMUST00000153692 - NO_TRANSLATION retained_intron ENSMUSG00000023007 Prpf40b ENSMUST00000150636 ENSMUSP00000119295 TRANSLATION protein_coding start - 3 189.0 0.0 2.2 0.0 21.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000023007 Prpf40b ENSMUST00000136980 ENSMUSP00000122649 TRANSLATION protein_coding - - 5 857.0 0.0 13.526 0.0 180.3 0.0 -4,-7 0.2115 8 7.34 ALTERNATIVE:2 ENSMUSG00000023007 Prpf40b ENSMUST00000126955 ENSMUSP00000123527 TRANSLATION protein_coding start - 5 86.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023007 Prpf40b ENSMUST00000139330 - NO_TRANSLATION retained_intron ENSMUSG00000023007 Prpf40b ENSMUST00000145482 ENSMUSP00000115869 TRANSLATION protein_coding - CCDS27818.1 1 873.0 0.0 13.606 0.0 180.3 0.0 -4,-7 0.6398 8 7.502 ALTERNATIVE:2 ENSMUSG00000023007 Prpf40b ENSMUST00000130575 - NO_TRANSLATION retained_intron ENSMUSG00000023007 Prpf40b ENSMUST00000138036 - NO_TRANSLATION retained_intron ENSMUSG00000023007 Prpf40b ENSMUST00000124275 - NO_TRANSLATION retained_intron ENSMUSG00000023007 Prpf40b ENSMUST00000140806 ENSMUSP00000121260 TRANSLATION nonsense_mediated_decay - - 5 92.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023007 Prpf40b ENSMUST00000118287 ENSMUSP00000113282 TRANSLATION protein_coding - - 1 870.0 0.0 13.856 0.0 180.3 0.0 -4,-7 0.7983 8 8.0 PRINCIPAL:4 ENSMUSG00000023007 Prpf40b ENSMUST00000150641 - NO_TRANSLATION retained_intron ENSMUSG00000023007 Prpf40b ENSMUST00000134034 ENSMUSP00000120030 TRANSLATION protein_coding start - 3 257.0 0.0 2.53 0.0 21.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000023007 Prpf40b ENSMUST00000128352 ENSMUSP00000119556 TRANSLATION protein_coding stop - 3 136.0 0.0 1.146 0.0 39.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000023007 Prpf40b ENSMUST00000023745 ENSMUSP00000023745 TRANSLATION protein_coding stop - 5 852.0 0.0 13.606 0.0 180.3 0.0 -4,-7 0.1849 8 -2.0 MINOR ENSMUSG00000037185 Krt80 ENSMUST00000230107 - NO_TRANSLATION retained_intron ENSMUSG00000037185 Krt80 ENSMUST00000229267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037185 Krt80 ENSMUST00000077196 ENSMUSP00000076437 TRANSLATION protein_coding - CCDS37216.1 1 452.0 0.0 3.26212 9.1 316.2 0.0 -4,-6 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000037185 Krt80 ENSMUST00000230909 ENSMUSP00000155346 TRANSLATION protein_coding - - - 399.0 0.0 3.26212 0.0 244.5 0.0 -4,-6 0.0244 12 7.698 MINOR ENSMUSG00000037185 Krt80 ENSMUST00000230831 ENSMUSP00000155526 TRANSLATION protein_coding - - - 221.0 0.0 1.88712 0.0 160.5 0.0 -4,-5 0.0 7 3.252 MINOR ENSMUSG00000056487 Tmt1a2 ENSMUST00000176287 ENSMUSP00000135213 TRANSLATION protein_coding - - 1 244.0 17.0 2.0 21.3 65.5 1.0 1,-3 0.8192 - 17.334 ALTERNATIVE:1 ENSMUSG00000056487 Tmt1a2 ENSMUST00000088142 ENSMUSP00000085467 TRANSLATION protein_coding - CCDS27836.1 1 244.0 17.0 2.0 21.3 75.2 1.0 1,-3 1.0 - 18.0 PRINCIPAL:4 ENSMUSG00000051225 Fam83a ENSMUST00000161231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051225 Fam83a ENSMUST00000160942 ENSMUSP00000125464 TRANSLATION protein_coding - CCDS27486.2 5 436.0 0.0 2.4 8.8 332.0 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000051225 Fam83a ENSMUST00000050374 ENSMUSP00000050051 TRANSLATION protein_coding - - 1 258.0 0.0 2.0 1.0 263.1 0.0 -4,-7 0.0439 - 6.864 MINOR ENSMUSG00000121584 Tmem276 ENSMUST00000177359 ENSMUSP00000135505 TRANSLATION protein_coding - CCDS27582.1 1 192.0 0.0 0.0 5.4 0.0 0.0 -3,-4 0.9906 1 2.0 PRINCIPAL:1 ENSMUSG00000121584 Tmem276 ENSMUST00000066677 ENSMUSP00000063317 TRANSLATION protein_coding - CCDS27582.1 1 192.0 0.0 0.0 5.4 0.0 0.0 -3,-4 0.9906 1 2.0 PRINCIPAL:1 ENSMUSG00000121584 Tmem276 ENSMUST00000230719 - NO_TRANSLATION retained_intron ENSMUSG00000121584 Tmem276 ENSMUST00000231152 ENSMUSP00000155579 TRANSLATION protein_coding - CCDS27582.1 - 192.0 0.0 0.0 5.4 0.0 0.0 -3,-4 0.9906 1 2.0 PRINCIPAL:1 ENSMUSG00000079020 Slc45a4 ENSMUST00000150409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079020 Slc45a4 ENSMUST00000144936 ENSMUSP00000122825 TRANSLATION protein_coding start - 1 721.0 0.0 2.33 0.0 0.0 19.0 -4,-6 0.0164 3 -2.0 MINOR ENSMUSG00000079020 Slc45a4 ENSMUST00000054266 ENSMUSP00000054651 TRANSLATION protein_coding - - 5 793.0 0.0 3.33 0.4 27.2 19.0 -4,-5 0.0868 3 10.332 MINOR ENSMUSG00000079020 Slc45a4 ENSMUST00000152558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079020 Slc45a4 ENSMUST00000130765 ENSMUSP00000115418 TRANSLATION protein_coding stop - 2 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079020 Slc45a4 ENSMUST00000151288 ENSMUSP00000121775 TRANSLATION protein_coding - CCDS27517.1 1 785.0 0.0 3.66 2.6 32.7 19.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000079020 Slc45a4 ENSMUST00000076224 ENSMUSP00000075577 TRANSLATION protein_coding - CCDS27517.1 1 785.0 0.0 3.66 2.6 32.7 19.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000079020 Slc45a4 ENSMUST00000132607 ENSMUSP00000115827 TRANSLATION protein_coding - CCDS49632.1 1 591.0 0.0 0.33 0.3 0.0 14.0 -4,-7 0.0515 3 0.0 MINOR ENSMUSG00000043144 Aqp6 ENSMUST00000230075 ENSMUSP00000154934 TRANSLATION protein_coding - - - 276.0 0.0 3.75 3.5 220.2 5.0 -3,-5 1.0 - 8.7 PRINCIPAL:2 ENSMUSG00000043144 Aqp6 ENSMUST00000023754 ENSMUSP00000023754 TRANSLATION protein_coding - CCDS27824.1 1 293.0 0.0 3.9 0.0 220.2 5.0 -3,-5 0.2771 - 8.0 ALTERNATIVE:2 ENSMUSG00000034161 Scx ENSMUST00000229271 - NO_TRANSLATION retained_intron ENSMUSG00000034161 Scx ENSMUST00000043089 ENSMUSP00000043668 TRANSLATION protein_coding - CCDS27571.1 1 207.0 0.0 0.6 3.5 64.2 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022336 Eif3e ENSMUST00000226281 - NO_TRANSLATION retained_intron ENSMUSG00000022336 Eif3e ENSMUST00000022960 ENSMUSP00000022960 TRANSLATION protein_coding - CCDS27452.1 1 445.0 0.0 11.5 33.5 227.5 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000022336 Eif3e ENSMUST00000226415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022336 Eif3e ENSMUST00000228892 - NO_TRANSLATION retained_intron ENSMUSG00000022454 Nell2 ENSMUST00000166170 ENSMUSP00000131665 TRANSLATION protein_coding - CCDS27775.1 5 819.0 22.0 5.48 20.9 243.9 0.0 2,-3 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000022454 Nell2 ENSMUST00000229981 ENSMUSP00000155490 TRANSLATION nonsense_mediated_decay - - - 806.0 22.0 5.48 0.0 243.9 0.0 2,-3 0.2204 15 -2.0 MINOR ENSMUSG00000022454 Nell2 ENSMUST00000229933 ENSMUSP00000155436 TRANSLATION protein_coding - - - 858.0 22.0 5.48 0.0 243.9 0.0 2,-3 0.1825 15 18.0 MINOR ENSMUSG00000022454 Nell2 ENSMUST00000075275 ENSMUSP00000074751 TRANSLATION protein_coding - CCDS27775.1 1 819.0 22.0 5.48 20.9 243.9 0.0 2,-3 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000049548 Krt82 ENSMUST00000023713 ENSMUSP00000023713 TRANSLATION protein_coding - CCDS27854.1 1 516.0 0.0 4.35 6.6 371.1 0.0 -4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000022421 Nptxr ENSMUST00000023057 ENSMUSP00000023057 TRANSLATION protein_coding - CCDS27653.1 1 493.0 0.0 3.0 1.1 104.0 0.0 -1,-4 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000022421 Nptxr ENSMUST00000125283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055748 Gsdmc4 ENSMUST00000063530 ENSMUSP00000066072 TRANSLATION protein_coding - CCDS49617.1 5 480.0 0.0 4.258 0.0 532.5 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055748 Gsdmc4 ENSMUST00000188108 ENSMUSP00000140269 TRANSLATION protein_coding - CCDS49617.1 1 480.0 0.0 4.258 0.0 532.5 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022594 Lynx1 ENSMUST00000189696 - NO_TRANSLATION retained_intron ENSMUSG00000022594 Lynx1 ENSMUST00000189128 ENSMUSP00000139494 TRANSLATION protein_coding stop - 3 34.0 0.0 0.5 0.0 0.0 0.0 4,-1 0.0024 - -2.0 MINOR ENSMUSG00000022594 Lynx1 ENSMUST00000023259 ENSMUSP00000023259 TRANSLATION protein_coding - CCDS27530.1 1 116.0 0.0 2.0 6.2 27.1 0.0 4,-1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000022150 Dab2 ENSMUST00000078019 ENSMUSP00000077166 TRANSLATION protein_coding - CCDS37030.1 1 548.0 6.0 4.564 1.3 33.4 0.0 -4,-5 0.2192 13 13.0 ALTERNATIVE:2 ENSMUSG00000022150 Dab2 ENSMUST00000161040 ENSMUSP00000124478 TRANSLATION protein_coding - - 1 235.0 6.0 4.364 0.1 35.9 0.0 -4,-5 0.0215 7 11.598 MINOR ENSMUSG00000022150 Dab2 ENSMUST00000162140 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022150 Dab2 ENSMUST00000163082 ENSMUSP00000124996 TRANSLATION protein_coding start - 5 634.0 2.0 2.314 0.0 0.0 0.0 -4,-5 0.0018 11 -2.0 MINOR ENSMUSG00000022150 Dab2 ENSMUST00000110664 ENSMUSP00000106292 TRANSLATION protein_coding - CCDS79357.1 5 745.0 6.0 4.564 1.0 33.4 0.0 -4,-5 0.5052 16 12.0 ALTERNATIVE:2 ENSMUSG00000022150 Dab2 ENSMUST00000080880 ENSMUSP00000079689 TRANSLATION protein_coding - CCDS37029.1 1 766.0 6.0 4.564 1.3 33.4 0.0 -4,-5 1.0 16 13.0 PRINCIPAL:2 ENSMUSG00000022150 Dab2 ENSMUST00000162094 ENSMUSP00000125696 TRANSLATION protein_coding stop - 5 110.0 4.0 2.25 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022150 Dab2 ENSMUST00000159552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022150 Dab2 ENSMUST00000161812 ENSMUSP00000124589 TRANSLATION protein_coding - CCDS49576.1 1 527.0 6.0 4.564 0.3 35.9 0.0 -4,-5 0.2106 13 12.0 ALTERNATIVE:2 ENSMUSG00000022150 Dab2 ENSMUST00000160134 ENSMUSP00000125021 TRANSLATION protein_coding - - 5 236.0 6.0 4.364 0.0 35.9 0.0 -4,-5 0.0218 7 11.598 MINOR ENSMUSG00000022150 Dab2 ENSMUST00000110663 ENSMUSP00000106291 TRANSLATION protein_coding - CCDS37030.1 1 548.0 6.0 4.564 1.3 33.4 0.0 -4,-5 0.2192 13 13.0 ALTERNATIVE:2 ENSMUSG00000022150 Dab2 ENSMUST00000159490 ENSMUSP00000124145 TRANSLATION protein_coding stop - 3 60.0 1.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022150 Dab2 ENSMUST00000159046 ENSMUSP00000125452 TRANSLATION protein_coding stop - 3 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0374 - -2.0 MINOR ENSMUSG00000022150 Dab2 ENSMUST00000161558 - NO_TRANSLATION retained_intron ENSMUSG00000068206 Pick1 ENSMUST00000018295 ENSMUSP00000018295 TRANSLATION protein_coding - CCDS27635.1 1 416.0 0.0 4.725 7.1 327.5 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000068206 Pick1 ENSMUST00000168513 - NO_TRANSLATION retained_intron ENSMUSG00000068206 Pick1 ENSMUST00000171365 - NO_TRANSLATION retained_intron ENSMUSG00000068206 Pick1 ENSMUST00000113954 - NO_TRANSLATION retained_intron ENSMUSG00000068206 Pick1 ENSMUST00000163571 ENSMUSP00000128126 TRANSLATION protein_coding - CCDS27635.1 5 416.0 0.0 4.725 7.1 327.5 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000068206 Pick1 ENSMUST00000171581 - NO_TRANSLATION retained_intron ENSMUSG00000068206 Pick1 ENSMUST00000165609 - NO_TRANSLATION retained_intron ENSMUSG00000068206 Pick1 ENSMUST00000166417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068206 Pick1 ENSMUST00000166155 ENSMUSP00000129468 TRANSLATION protein_coding - CCDS27635.1 1 416.0 0.0 4.725 7.1 327.5 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000068206 Pick1 ENSMUST00000172162 - NO_TRANSLATION retained_intron ENSMUSG00000068206 Pick1 ENSMUST00000169548 - NO_TRANSLATION retained_intron ENSMUSG00000068086 Cyp2d9 ENSMUST00000229793 ENSMUSP00000155726 TRANSLATION protein_coding stop - - 103.0 2.0 3.08 0.0 38.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000068086 Cyp2d9 ENSMUST00000229181 - NO_TRANSLATION retained_intron ENSMUSG00000068086 Cyp2d9 ENSMUST00000231136 ENSMUSP00000155611 TRANSLATION protein_coding stop - - 254.0 5.0 5.83 0.0 105.0 2.0 -2,-5 0.0003 2 -2.0 MINOR ENSMUSG00000068086 Cyp2d9 ENSMUST00000089129 ENSMUSP00000086530 TRANSLATION protein_coding - CCDS27691.1 1 504.0 30.0 11.74 6.7 471.2 2.0 -2,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000068086 Cyp2d9 ENSMUST00000229313 ENSMUSP00000155000 TRANSLATION protein_coding stop - - 158.0 2.0 4.33 0.0 57.9 2.0 -2,-5 0.0016 2 -2.0 MINOR ENSMUSG00000068086 Cyp2d9 ENSMUST00000229473 ENSMUSP00000154879 TRANSLATION nonsense_mediated_decay start - - 53.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000068086 Cyp2d9 ENSMUST00000230024 ENSMUSP00000155373 TRANSLATION protein_coding start - - 206.0 13.0 3.83 0.0 170.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000068086 Cyp2d9 ENSMUST00000230000 ENSMUSP00000155410 TRANSLATION protein_coding start/stop - - 208.0 8.0 5.08 0.0 145.7 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000068086 Cyp2d9 ENSMUST00000230191 ENSMUSP00000155496 TRANSLATION nonsense_mediated_decay - - - 294.0 6.0 7.094 0.1 172.4 2.0 -2,-5 0.0035 4 -2.0 MINOR ENSMUSG00000118516 Cyp2d13 ENSMUST00000238885 ENSMUSP00000159523 TRANSLATION nonsense_mediated_decay - - - 76.0 0.0 1.0 0.0 0.0 0.0 -1,-5 0.7008 - -2.0 PRINCIPAL:1 ENSMUSG00000118516 Cyp2d13 ENSMUST00000239057 - NO_TRANSLATION protein_coding_LoF ENSMUSG00000038009 Dnajc22 ENSMUST00000061295 ENSMUSP00000055482 TRANSLATION protein_coding - CCDS27815.1 1 339.0 0.0 0.965 13.7 94.9 0.0 0,-4 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000038009 Dnajc22 ENSMUST00000146173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000552 Zfp385a ENSMUST00000229373 ENSMUSP00000155498 TRANSLATION protein_coding - - - 366.0 12.0 0.0 0.0 91.6 0.0 -4,-7 0.0527 6 12.0 MINOR ENSMUSG00000000552 Zfp385a ENSMUST00000229551 ENSMUSP00000155501 TRANSLATION protein_coding - - - 347.0 12.0 0.0 2.5 91.6 0.0 -4,-2 0.2182 6 12.555 MINOR ENSMUSG00000000552 Zfp385a ENSMUST00000168828 ENSMUSP00000130176 TRANSLATION protein_coding - CCDS49743.1 1 386.0 12.0 0.0 9.1 91.6 0.0 -4,-7 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000046380 Jrk ENSMUST00000050234 ENSMUSP00000051842 TRANSLATION protein_coding - CCDS27524.1 1 557.0 0.0 0.0 0.4 288.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047034 Ankrd33 ENSMUST00000070875 ENSMUSP00000067028 TRANSLATION protein_coding - CCDS27845.1 1 337.0 0.0 3.515 0.0 53.8 0.0 -4,-7 0.9254 - 6.728 PRINCIPAL:2 ENSMUSG00000047034 Ankrd33 ENSMUST00000229842 ENSMUSP00000155417 TRANSLATION protein_coding stop - - 107.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047034 Ankrd33 ENSMUST00000229954 ENSMUSP00000155584 TRANSLATION protein_coding - - - 385.0 0.0 4.15 0.0 46.5 0.0 -4,-5 0.0756 - 6.0 ALTERNATIVE:2 ENSMUSG00000047034 Ankrd33 ENSMUST00000229263 ENSMUSP00000155792 TRANSLATION nonsense_mediated_decay - - - 79.0 0.0 0.8 0.0 0.0 1.0 -4,-6 0.0014 - -2.0 MINOR ENSMUSG00000047034 Ankrd33 ENSMUST00000231208 - NO_TRANSLATION retained_intron ENSMUSG00000047034 Ankrd33 ENSMUST00000231158 ENSMUSP00000155466 TRANSLATION protein_coding stop - - 113.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000047034 Ankrd33 ENSMUST00000229930 ENSMUSP00000155211 TRANSLATION nonsense_mediated_decay - - - 79.0 0.0 0.8 0.0 0.0 1.0 -4,-6 0.0014 - -2.0 MINOR ENSMUSG00000116376 Tmem249 ENSMUST00000229074 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000116376 Tmem249 ENSMUST00000230604 ENSMUSP00000155040 TRANSLATION protein_coding - - - 171.0 0.0 2.15 0.0 206.5 0.0 -3,-5 0.7546 1 12.0 PRINCIPAL:1 ENSMUSG00000068600 Gml2 ENSMUST00000186752 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068600 Gml2 ENSMUST00000096399 ENSMUSP00000094130 TRANSLATION protein_coding - CCDS27534.1 1 176.0 0.0 0.0 0.1 0.0 0.0 3,-2 0.3436 1 0.0 ALTERNATIVE:2 ENSMUSG00000068600 Gml2 ENSMUST00000188458 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068600 Gml2 ENSMUST00000188180 ENSMUSP00000141185 TRANSLATION protein_coding - - 1 94.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.6262 1 0.0 PRINCIPAL:2 ENSMUSG00000068220 Lgals1 ENSMUST00000089377 ENSMUSP00000086795 TRANSLATION protein_coding - CCDS27628.1 1 135.0 9.0 2.75 20.7 101.9 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000068220 Lgals1 ENSMUST00000229159 ENSMUSP00000155144 TRANSLATION nonsense_mediated_decay - - - 35.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023052 Npff ENSMUST00000184659 - NO_TRANSLATION retained_intron ENSMUSG00000023052 Npff ENSMUST00000023814 ENSMUSP00000023814 TRANSLATION protein_coding - CCDS27887.1 1 114.0 0.0 0.0 1.1 44.2 0.0 4,-1 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000050439 Enthd1 ENSMUST00000229110 ENSMUSP00000155166 TRANSLATION protein_coding - CCDS49671.1 - 618.0 9.0 1.2 0.1 152.7 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000050439 Enthd1 ENSMUST00000096347 ENSMUSP00000094072 TRANSLATION protein_coding - CCDS49671.1 1 618.0 9.0 1.2 0.1 152.7 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000035845 Alg12 ENSMUST00000162183 ENSMUSP00000123935 TRANSLATION protein_coding - CCDS49694.1 1 486.0 0.0 9.25 21.5 142.5 11.0 0,-3 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000035845 Alg12 ENSMUST00000160222 - NO_TRANSLATION retained_intron ENSMUSG00000035845 Alg12 ENSMUST00000159328 ENSMUSP00000125534 TRANSLATION protein_coding stop - 3 171.0 0.0 3.5 0.0 49.6 7.0 0,-3 0.0037 3 -2.0 MINOR ENSMUSG00000035845 Alg12 ENSMUST00000043087 ENSMUSP00000043480 TRANSLATION protein_coding - CCDS27732.1 1 385.0 0.0 7.25 0.0 45.9 11.0 0,-3 0.0208 5 2.202 MINOR ENSMUSG00000022623 Shank3 ENSMUST00000039074 ENSMUSP00000048062 TRANSLATION protein_coding start - 1 768.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0099 12 -2.0 MINOR ENSMUSG00000022623 Shank3 ENSMUST00000154240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022623 Shank3 ENSMUST00000109309 ENSMUSP00000104932 TRANSLATION protein_coding - CCDS27754.1 1 1730.0 3.0 15.26 0.0 230.5 0.0 -4,-5 1.0 39 15.0 PRINCIPAL:1 ENSMUSG00000022623 Shank3 ENSMUST00000229559 ENSMUSP00000154842 TRANSLATION nonsense_mediated_decay - - - 307.0 0.0 5.864 0.0 73.4 0.0 -4,-7 0.0013 6 -2.0 MINOR ENSMUSG00000022623 Shank3 ENSMUST00000230807 ENSMUSP00000155608 TRANSLATION protein_coding - - - 382.0 0.0 5.6 0.0 73.4 0.0 -4,-7 0.0 8 0.0 MINOR ENSMUSG00000022623 Shank3 ENSMUST00000066545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022623 Shank3 ENSMUST00000135214 ENSMUSP00000159275 TRANSLATION protein_coding stop - 3 70.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022623 Shank3 ENSMUST00000167173 ENSMUSP00000132229 TRANSLATION protein_coding stop - 5 135.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000022623 Shank3 ENSMUST00000238458 ENSMUSP00000158668 TRANSLATION protein_coding - - - 211.0 3.0 0.6 0.0 76.6 0.0 3,2 0.0006 6 3.0 MINOR ENSMUSG00000022623 Shank3 ENSMUST00000123799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035900 Gramd4 ENSMUST00000123349 ENSMUSP00000117468 TRANSLATION nonsense_mediated_decay - - 2 323.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0062 4 -2.0 MINOR ENSMUSG00000035900 Gramd4 ENSMUST00000123474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035900 Gramd4 ENSMUST00000088931 ENSMUSP00000086321 TRANSLATION protein_coding - CCDS27727.1 1 633.0 0.0 0.0 0.0 76.9 3.0 -4,-7 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000035900 Gramd4 ENSMUST00000147286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035900 Gramd4 ENSMUST00000138134 ENSMUSP00000120796 TRANSLATION protein_coding - CCDS56998.1 1 627.0 0.0 0.0 0.0 52.3 3.0 -4,-7 0.1759 9 4.08 MINOR ENSMUSG00000054036 Or11m3 ENSMUST00000205772 ENSMUSP00000145811 TRANSLATION protein_coding - CCDS27796.1 3 310.0 0.0 1.0 0.0 169.7 3.0 -3,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054036 Or11m3 ENSMUST00000050451 ENSMUSP00000061693 TRANSLATION protein_coding - CCDS27796.1 - 310.0 0.0 1.0 0.0 169.7 3.0 -3,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054036 Or11m3 ENSMUST00000216822 ENSMUSP00000150851 TRANSLATION protein_coding - CCDS27796.1 5 310.0 0.0 1.0 0.0 169.7 3.0 -3,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022346 Myc ENSMUST00000161976 ENSMUSP00000123821 TRANSLATION protein_coding - CCDS49615.1 1 439.0 0.0 1.8 6.6 493.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000022346 Myc ENSMUST00000167731 ENSMUSP00000130285 TRANSLATION protein_coding start CCDS49614.1 1 453.0 0.0 1.8 3.3 493.9 0.0 -4,-6 0.723 - -2.0 MINOR ENSMUSG00000022346 Myc ENSMUST00000159338 ENSMUSP00000125480 TRANSLATION protein_coding stop - 2 32.0 0.0 1.0 0.0 34.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022346 Myc ENSMUST00000160009 ENSMUSP00000123852 TRANSLATION protein_coding - CCDS49615.1 1 439.0 0.0 1.8 6.6 493.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000022346 Myc ENSMUST00000022971 ENSMUSP00000022971 TRANSLATION protein_coding start CCDS27504.1 1 454.0 0.0 1.8 3.3 493.9 0.0 -4,-5 0.6939 - -2.0 MINOR ENSMUSG00000022346 Myc ENSMUST00000191178 ENSMUSP00000141139 TRANSLATION protein_coding start CCDS49614.1 1 453.0 0.0 1.8 3.3 493.9 0.0 -4,-6 0.723 - -2.0 MINOR ENSMUSG00000022346 Myc ENSMUST00000159327 ENSMUSP00000124758 TRANSLATION protein_coding - CCDS49615.1 1 439.0 0.0 1.8 6.6 493.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000022610 Mapk12 ENSMUST00000230509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022610 Mapk12 ENSMUST00000231056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022610 Mapk12 ENSMUST00000229193 - NO_TRANSLATION retained_intron ENSMUSG00000022610 Mapk12 ENSMUST00000088827 ENSMUSP00000086207 TRANSLATION protein_coding - CCDS27740.1 1 367.0 20.0 9.43 12.3 236.8 0.0 -4,-7 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000022610 Mapk12 ENSMUST00000231014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022610 Mapk12 ENSMUST00000230352 - NO_TRANSLATION retained_intron ENSMUSG00000022610 Mapk12 ENSMUST00000230266 - NO_TRANSLATION retained_intron ENSMUSG00000018893 Mb ENSMUST00000166179 ENSMUSP00000128399 TRANSLATION protein_coding - CCDS27597.1 1 154.0 18.0 4.25 17.0 76.4 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000018893 Mb ENSMUST00000229125 ENSMUSP00000155252 TRANSLATION protein_coding stop - - 83.0 8.0 2.5 0.0 60.1 0.0 -4,-5 0.0006 6 -2.0 MINOR ENSMUSG00000018893 Mb ENSMUST00000019037 ENSMUSP00000019037 TRANSLATION protein_coding - CCDS27597.1 2 154.0 18.0 4.25 17.0 76.4 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000018893 Mb ENSMUST00000229423 ENSMUSP00000155115 TRANSLATION protein_coding - CCDS27597.1 - 154.0 18.0 4.25 17.0 76.4 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000018893 Mb ENSMUST00000230031 ENSMUSP00000154870 TRANSLATION protein_coding - - - 99.0 15.0 2.5 1.7 28.9 0.0 -4,-5 0.0272 8 8.948 MINOR ENSMUSG00000018893 Mb ENSMUST00000169226 ENSMUSP00000125995 TRANSLATION protein_coding - CCDS27597.1 1 154.0 18.0 4.25 17.0 76.4 0.0 -4,-5 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000075408 Smim41 ENSMUST00000191426 ENSMUSP00000153762 TRANSLATION protein_coding - - 1 89.0 0.0 0.0 2.5 0.0 0.0 -4,-7 0.6778 1 1.0 PRINCIPAL:1 ENSMUSG00000068083 Cyp2d40 ENSMUST00000055721 ENSMUSP00000060524 TRANSLATION protein_coding - CCDS37162.1 1 338.0 27.0 5.1 0.0 312.3 0.0 -2,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000068083 Cyp2d40 ENSMUST00000230433 - NO_TRANSLATION retained_intron ENSMUSG00000010601 Apol7a ENSMUST00000177135 - NO_TRANSLATION retained_intron ENSMUSG00000010601 Apol7a ENSMUST00000176074 ENSMUSP00000134864 TRANSLATION protein_coding - CCDS37125.1 1 418.0 0.0 1.2 0.0 437.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000010601 Apol7a ENSMUST00000010745 ENSMUSP00000010745 TRANSLATION protein_coding - CCDS37125.1 1 418.0 0.0 1.2 0.0 437.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000010601 Apol7a ENSMUST00000175789 ENSMUSP00000135369 TRANSLATION protein_coding stop - 3 44.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010601 Apol7a ENSMUST00000175919 ENSMUSP00000135864 TRANSLATION protein_coding - CCDS37125.1 1 418.0 0.0 1.2 0.0 437.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022191 Drosha ENSMUST00000169061 ENSMUSP00000129279 TRANSLATION protein_coding - CCDS49583.1 1 1373.0 7.0 22.5 6.0 196.6 0.0 -4,-7 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000022191 Drosha ENSMUST00000141010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022191 Drosha ENSMUST00000150211 - NO_TRANSLATION retained_intron ENSMUSG00000022191 Drosha ENSMUST00000147647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022191 Drosha ENSMUST00000156594 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022191 Drosha ENSMUST00000141706 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022191 Drosha ENSMUST00000090292 ENSMUSP00000087762 TRANSLATION protein_coding - CCDS49583.1 1 1373.0 7.0 22.5 6.0 196.6 0.0 -4,-7 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000056184 Or8s2 ENSMUST00000215830 ENSMUSP00000150348 TRANSLATION protein_coding - CCDS27792.1 5 309.0 0.0 1.0 9.0 184.2 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056184 Or8s2 ENSMUST00000057386 ENSMUSP00000051239 TRANSLATION protein_coding - CCDS27792.1 - 309.0 0.0 1.0 9.0 184.2 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022463 Srebf2 ENSMUST00000229336 ENSMUSP00000155022 TRANSLATION protein_coding - - - 1096.0 0.0 1.96 0.0 58.5 2.0 -4,-5 0.2229 11 12.0 MINOR ENSMUSG00000022463 Srebf2 ENSMUST00000231065 - NO_TRANSLATION retained_intron ENSMUSG00000022463 Srebf2 ENSMUST00000229518 - NO_TRANSLATION retained_intron ENSMUSG00000022463 Srebf2 ENSMUST00000230105 - NO_TRANSLATION retained_intron ENSMUSG00000022463 Srebf2 ENSMUST00000230955 ENSMUSP00000155331 TRANSLATION protein_coding start/stop - - 247.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0007 3 -2.0 MINOR ENSMUSG00000022463 Srebf2 ENSMUST00000023100 ENSMUSP00000023100 TRANSLATION protein_coding - CCDS27683.1 1 1130.0 0.0 1.96 4.2 58.5 2.0 -4,-5 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000022463 Srebf2 ENSMUST00000229009 ENSMUSP00000154839 TRANSLATION protein_coding stop - - 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000049521 Cdc42ep1 ENSMUST00000059619 ENSMUSP00000060930 TRANSLATION protein_coding - CCDS27624.1 1 409.0 0.0 0.2 0.0 90.4 0.0 -4,-7 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000022574 Naprt ENSMUST00000023237 ENSMUSP00000023237 TRANSLATION protein_coding - CCDS27552.1 1 538.0 0.0 12.0 5.8 0.0 0.0 -4,-6 1.0 14 8.0 PRINCIPAL:1 ENSMUSG00000022574 Naprt ENSMUST00000230739 - NO_TRANSLATION retained_intron ENSMUSG00000022574 Naprt ENSMUST00000230259 - NO_TRANSLATION retained_intron ENSMUSG00000022574 Naprt ENSMUST00000229571 ENSMUSP00000155290 TRANSLATION nonsense_mediated_decay - - - 344.0 0.0 6.75 0.0 0.0 0.0 -4,-6 0.0125 6 -2.0 MINOR ENSMUSG00000016552 Foxred2 ENSMUST00000129045 - NO_TRANSLATION retained_intron ENSMUSG00000016552 Foxred2 ENSMUST00000117725 ENSMUSP00000113403 TRANSLATION protein_coding - CCDS27607.1 1 665.0 31.0 0.72 0.4 22.6 0.0 1,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000016552 Foxred2 ENSMUST00000140096 - NO_TRANSLATION retained_intron ENSMUSG00000016552 Foxred2 ENSMUST00000016696 ENSMUSP00000016696 TRANSLATION protein_coding - CCDS27607.1 1 665.0 31.0 0.72 0.4 22.6 0.0 1,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000067594 Krt77 ENSMUST00000229995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067594 Krt77 ENSMUST00000087996 ENSMUSP00000085311 TRANSLATION protein_coding - CCDS27865.1 1 572.0 0.0 4.95 0.0 483.5 0.0 -4,0 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000056656 Apol8 ENSMUST00000070911 ENSMUSP00000064237 TRANSLATION protein_coding - CCDS56989.1 1 339.0 0.0 1.8 0.4 428.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000056656 Apol8 ENSMUST00000230332 - NO_TRANSLATION retained_intron ENSMUSG00000056656 Apol8 ENSMUST00000229445 ENSMUSP00000155102 TRANSLATION protein_coding stop - - 78.0 0.0 1.425 0.0 50.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056656 Apol8 ENSMUST00000089450 ENSMUSP00000086873 TRANSLATION protein_coding - CCDS56989.1 5 339.0 0.0 1.8 0.4 428.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000056656 Apol8 ENSMUST00000229332 ENSMUSP00000155474 TRANSLATION protein_coding stop - - 25.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048218 Amigo2 ENSMUST00000053106 ENSMUSP00000059913 TRANSLATION protein_coding - CCDS27780.1 1 519.0 0.0 0.5 15.4 86.6 1.0 -1,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000048218 Amigo2 ENSMUST00000229890 ENSMUSP00000155019 TRANSLATION protein_coding - CCDS27780.1 - 519.0 0.0 0.5 15.4 86.6 1.0 -1,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000037280 Galnt6 ENSMUST00000161514 ENSMUSP00000124793 TRANSLATION protein_coding - CCDS27843.1 1 622.0 21.0 9.8 15.0 202.9 0.0 -1,-2 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000037280 Galnt6 ENSMUST00000159715 ENSMUSP00000123848 TRANSLATION protein_coding - CCDS27843.1 1 622.0 21.0 9.8 15.0 202.9 0.0 -1,-2 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000037280 Galnt6 ENSMUST00000052069 ENSMUSP00000056705 TRANSLATION protein_coding - CCDS27843.1 1 622.0 21.0 9.8 15.0 202.9 0.0 -1,-2 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000022361 Zhx1 ENSMUST00000110168 ENSMUSP00000105797 TRANSLATION protein_coding - CCDS27488.1 5 873.0 9.0 0.7 11.9 153.0 0.0 -4,-6 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000022361 Zhx1 ENSMUST00000175805 ENSMUSP00000134844 TRANSLATION protein_coding - CCDS27488.1 5 873.0 9.0 0.7 11.9 153.0 0.0 -4,-6 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000022361 Zhx1 ENSMUST00000177276 ENSMUSP00000135230 TRANSLATION protein_coding stop - 1 623.0 9.0 0.2 0.0 79.1 0.0 -4,-6 0.0014 4 -2.0 MINOR ENSMUSG00000022361 Zhx1 ENSMUST00000176270 - NO_TRANSLATION retained_intron ENSMUSG00000022361 Zhx1 ENSMUST00000176713 - NO_TRANSLATION retained_intron ENSMUSG00000022361 Zhx1 ENSMUST00000070143 ENSMUSP00000066201 TRANSLATION protein_coding - CCDS27488.1 1 873.0 9.0 0.7 11.9 153.0 0.0 -4,-6 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000043501 Lgals2 ENSMUST00000044584 ENSMUSP00000036598 TRANSLATION protein_coding - CCDS37135.1 1 130.0 7.0 2.75 12.4 104.2 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000061527 Krt5 ENSMUST00000023709 ENSMUSP00000023709 TRANSLATION protein_coding - CCDS27861.1 1 580.0 0.0 4.75 0.0 530.3 0.0 -4,0 1.0 27 12.0 PRINCIPAL:1 ENSMUSG00000052369 Tmem106c ENSMUST00000230361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052369 Tmem106c ENSMUST00000230072 ENSMUSP00000155091 TRANSLATION protein_coding stop - - 116.0 2.0 1.0 0.0 157.8 1.0 -4,-6 0.0034 - -2.0 MINOR ENSMUSG00000052369 Tmem106c ENSMUST00000064200 ENSMUSP00000069764 TRANSLATION protein_coding - CCDS27785.1 1 260.0 2.0 5.0 0.1 339.5 1.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000052369 Tmem106c ENSMUST00000231079 - NO_TRANSLATION retained_intron ENSMUSG00000052369 Tmem106c ENSMUST00000229433 ENSMUSP00000154837 TRANSLATION protein_coding stop - - 165.0 2.0 2.5 0.0 231.7 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000052369 Tmem106c ENSMUST00000230144 - NO_TRANSLATION retained_intron ENSMUSG00000052369 Tmem106c ENSMUST00000229428 ENSMUSP00000154819 TRANSLATION protein_coding - CCDS27785.1 - 260.0 2.0 5.0 0.1 339.5 1.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000052369 Tmem106c ENSMUST00000230005 - NO_TRANSLATION retained_intron ENSMUSG00000052369 Tmem106c ENSMUST00000231144 ENSMUSP00000155384 TRANSLATION protein_coding stop - - 166.0 2.0 2.5 0.0 231.7 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000056293 Gsdmc2 ENSMUST00000089900 ENSMUSP00000087344 TRANSLATION protein_coding - CCDS37087.1 5 480.0 0.0 4.0245 0.0 515.4 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000056293 Gsdmc2 ENSMUST00000188404 ENSMUSP00000141066 TRANSLATION protein_coding - CCDS37087.1 1 480.0 0.0 4.0245 0.0 515.4 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000056293 Gsdmc2 ENSMUST00000188691 ENSMUSP00000140487 TRANSLATION protein_coding - CCDS37087.1 1 480.0 0.0 4.0245 0.0 515.4 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000041841 Rpl37 ENSMUST00000227463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041841 Rpl37 ENSMUST00000227111 - NO_TRANSLATION retained_intron ENSMUSG00000041841 Rpl37 ENSMUST00000045356 ENSMUSP00000046506 TRANSLATION protein_coding - CCDS37027.1 1 97.0 4.0 2.5 17.0 93.2 0.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000041841 Rpl37 ENSMUST00000226758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041841 Rpl37 ENSMUST00000227635 - NO_TRANSLATION retained_intron ENSMUSG00000041841 Rpl37 ENSMUST00000227674 - NO_TRANSLATION retained_intron ENSMUSG00000044678 Ly6k ENSMUST00000060301 ENSMUSP00000052599 TRANSLATION protein_coding - CCDS27532.1 1 154.0 0.0 0.706 0.0 23.1 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000044678 Ly6k ENSMUST00000168815 ENSMUSP00000132129 TRANSLATION protein_coding - CCDS27532.1 1 154.0 0.0 0.706 0.0 23.1 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000097050 Gm9918 ENSMUST00000181801 ENSMUSP00000148664 TRANSLATION protein_coding - - 1 174.0 0.0 0.0 1.0 0.0 0.0 -4,-7 0.6002 - 0.0 PRINCIPAL:1 ENSMUSG00000046434 Hnrnpa1 ENSMUST00000087351 ENSMUSP00000084609 TRANSLATION protein_coding - CCDS37233.1 1 320.0 0.0 5.16 9.8 194.8 0.0 -4,-5 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000046434 Hnrnpa1 ENSMUST00000231141 ENSMUSP00000155311 TRANSLATION protein_coding - - - 268.0 0.0 4.16 0.0 123.1 0.0 -4,-5 0.0002 16 5.7 MINOR ENSMUSG00000046434 Hnrnpa1 ENSMUST00000036004 ENSMUSP00000042658 TRANSLATION protein_coding - CCDS37232.1 1 373.0 0.0 5.16 4.8 194.8 0.0 -4,-5 0.6858 18 13.296 MINOR ENSMUSG00000046434 Hnrnpa1 ENSMUST00000230171 ENSMUSP00000155833 TRANSLATION nonsense_mediated_decay - CCDS37233.1 - 320.0 0.0 5.16 9.8 194.8 0.0 -4,-5 1.0 18 -2.0 MINOR ENSMUSG00000046434 Hnrnpa1 ENSMUST00000230489 ENSMUSP00000154865 TRANSLATION nonsense_mediated_decay - CCDS37232.1 - 373.0 0.0 5.16 4.8 194.8 0.0 -4,-5 0.6858 - -2.0 MINOR ENSMUSG00000022394 L3mbtl2 ENSMUST00000173607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022394 L3mbtl2 ENSMUST00000174274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022394 L3mbtl2 ENSMUST00000172568 ENSMUSP00000155456 TRANSLATION nonsense_mediated_decay - - 1 393.0 3.0 5.5 0.0 144.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022394 L3mbtl2 ENSMUST00000174229 ENSMUSP00000133967 TRANSLATION protein_coding - CCDS79394.1 1 739.0 3.0 9.49 0.0 321.9 0.0 -4,-5 0.1522 2 15.0 MINOR ENSMUSG00000022394 L3mbtl2 ENSMUST00000173105 - NO_TRANSLATION retained_intron ENSMUSG00000022394 L3mbtl2 ENSMUST00000172620 - NO_TRANSLATION retained_intron ENSMUSG00000022394 L3mbtl2 ENSMUST00000172748 ENSMUSP00000134333 TRANSLATION protein_coding - CCDS79395.1 1 713.0 3.0 9.49 0.0 321.9 0.0 -4,-5 0.2522 2 15.0 MINOR ENSMUSG00000022394 L3mbtl2 ENSMUST00000023029 ENSMUSP00000023029 TRANSLATION protein_coding - CCDS27669.1 1 703.0 3.0 9.49 9.1 321.9 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000022394 L3mbtl2 ENSMUST00000173761 - NO_TRANSLATION retained_intron ENSMUSG00000022394 L3mbtl2 ENSMUST00000174497 ENSMUSP00000133549 TRANSLATION protein_coding start - 3 138.0 0.0 2.75 0.0 73.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022394 L3mbtl2 ENSMUST00000174401 - NO_TRANSLATION retained_intron ENSMUSG00000013846 St3gal1 ENSMUST00000229028 ENSMUSP00000154853 TRANSLATION protein_coding - CCDS27511.1 - 337.0 17.0 4.5 16.6 267.4 0.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000013846 St3gal1 ENSMUST00000229742 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013846 St3gal1 ENSMUST00000092640 ENSMUSP00000090307 TRANSLATION protein_coding - CCDS27511.1 1 337.0 17.0 4.5 16.6 267.4 0.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000013846 St3gal1 ENSMUST00000229213 ENSMUSP00000155359 TRANSLATION protein_coding - CCDS27511.1 - 337.0 17.0 4.5 16.6 267.4 0.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000013846 St3gal1 ENSMUST00000230150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022241 Tars ENSMUST00000228814 ENSMUSP00000153826 TRANSLATION nonsense_mediated_decay - - - 119.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000022241 Tars ENSMUST00000228710 - NO_TRANSLATION retained_intron ENSMUSG00000022241 Tars ENSMUST00000226944 - NO_TRANSLATION retained_intron ENSMUSG00000022241 Tars ENSMUST00000226597 - NO_TRANSLATION retained_intron ENSMUSG00000022241 Tars ENSMUST00000228207 - NO_TRANSLATION retained_intron ENSMUSG00000022241 Tars ENSMUST00000022849 ENSMUSP00000022849 TRANSLATION protein_coding - CCDS27385.1 1 722.0 17.0 16.25 14.0 303.3 0.0 -4,-5 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000022241 Tars ENSMUST00000226904 - NO_TRANSLATION retained_intron ENSMUSG00000022429 Dmc1 ENSMUST00000230121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022429 Dmc1 ENSMUST00000023065 ENSMUSP00000023065 TRANSLATION protein_coding - CCDS27644.1 1 340.0 6.0 9.25 9.8 365.3 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000022429 Dmc1 ENSMUST00000230011 ENSMUSP00000154933 TRANSLATION nonsense_mediated_decay - - - 109.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022429 Dmc1 ENSMUST00000229408 ENSMUSP00000155228 TRANSLATION protein_coding - - - 285.0 6.0 7.5 5.4 263.9 0.0 -4,-5 0.1999 - 10.002 MINOR ENSMUSG00000022429 Dmc1 ENSMUST00000229472 - NO_TRANSLATION retained_intron ENSMUSG00000075600 Zc3h3 ENSMUST00000100538 ENSMUSP00000098106 TRANSLATION protein_coding - CCDS27550.1 1 950.0 20.0 1.8 0.1 22.9 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000075600 Zc3h3 ENSMUST00000229000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075600 Zc3h3 ENSMUST00000229970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038879 Nipal2 ENSMUST00000040791 ENSMUSP00000038922 TRANSLATION protein_coding - CCDS37058.1 1 383.0 0.0 8.0 4.0 391.2 10.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038879 Nipal2 ENSMUST00000227222 - NO_TRANSLATION retained_intron ENSMUSG00000038879 Nipal2 ENSMUST00000227336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038879 Nipal2 ENSMUST00000227126 - NO_TRANSLATION retained_intron ENSMUSG00000038879 Nipal2 ENSMUST00000228073 ENSMUSP00000153811 TRANSLATION nonsense_mediated_decay - - - 71.0 0.0 0.75 0.0 0.0 2.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000038879 Nipal2 ENSMUST00000228679 ENSMUSP00000153915 TRANSLATION nonsense_mediated_decay start - - 71.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000009575 Cbx5 ENSMUST00000108813 ENSMUSP00000104441 TRANSLATION protein_coding - CCDS37231.1 1 191.0 0.0 4.0 20.7 161.7 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000009575 Cbx5 ENSMUST00000122182 ENSMUSP00000113158 TRANSLATION protein_coding - CCDS37231.1 1 191.0 0.0 4.0 20.7 161.7 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000009575 Cbx5 ENSMUST00000127191 ENSMUSP00000120837 TRANSLATION protein_coding stop - 3 42.0 0.0 1.0 0.0 25.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009575 Cbx5 ENSMUST00000118152 ENSMUSP00000113157 TRANSLATION protein_coding - CCDS37231.1 1 191.0 0.0 4.0 20.7 161.7 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000037362 Ccn3 ENSMUST00000050027 ENSMUSP00000054389 TRANSLATION protein_coding - CCDS27471.1 1 354.0 3.0 2.0 1.3 128.0 0.0 3,-4 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000034429 Zfp707 ENSMUST00000156444 - NO_TRANSLATION retained_intron ENSMUSG00000034429 Zfp707 ENSMUST00000131496 - NO_TRANSLATION retained_intron ENSMUSG00000034429 Zfp707 ENSMUST00000145100 ENSMUSP00000120565 TRANSLATION protein_coding start/stop - 3 199.0 4.0 2.5 0.0 82.6 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034429 Zfp707 ENSMUST00000229652 ENSMUSP00000154921 TRANSLATION protein_coding - - - 317.0 28.0 2.5 0.0 113.3 0.0 -4,-5 0.0331 - 11.046 MINOR ENSMUSG00000034429 Zfp707 ENSMUST00000147641 ENSMUSP00000119705 TRANSLATION protein_coding start - 1 391.0 28.0 3.5 0.0 195.9 0.0 -4,-1 0.2448 1 -2.0 MINOR ENSMUSG00000034429 Zfp707 ENSMUST00000109966 ENSMUSP00000105592 TRANSLATION protein_coding - CCDS84174.1 1 384.0 28.0 3.5 0.1 195.9 0.0 -4,0 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000034429 Zfp707 ENSMUST00000109967 ENSMUSP00000105593 TRANSLATION protein_coding - CCDS37110.1 1 338.0 28.0 3.0 0.0 164.3 0.0 -4,-5 0.058 - 15.102 MINOR ENSMUSG00000060036 Rpl3 ENSMUST00000188025 - NO_TRANSLATION retained_intron ENSMUSG00000060036 Rpl3 ENSMUST00000187832 ENSMUSP00000139467 TRANSLATION nonsense_mediated_decay - - 5 180.0 0.0 2.0 0.0 214.1 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000060036 Rpl3 ENSMUST00000081650 ENSMUSP00000080354 TRANSLATION protein_coding - CCDS37144.1 1 403.0 0.0 9.5 36.2 641.1 0.0 -4,-1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000060036 Rpl3 ENSMUST00000185306 ENSMUSP00000140228 TRANSLATION protein_coding stop - 5 188.0 0.0 3.0 0.0 287.7 0.0 -4,-1 0.0007 4 -2.0 MINOR ENSMUSG00000060036 Rpl3 ENSMUST00000230985 ENSMUSP00000155250 TRANSLATION protein_coding start - - 134.0 0.0 3.25 0.0 162.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000060036 Rpl3 ENSMUST00000185928 - NO_TRANSLATION retained_intron ENSMUSG00000060036 Rpl3 ENSMUST00000187578 - NO_TRANSLATION retained_intron ENSMUSG00000022996 Wnt10b ENSMUST00000023732 ENSMUSP00000023732 TRANSLATION protein_coding - CCDS27806.1 5 389.0 0.0 2.394 3.8 373.7 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022996 Wnt10b ENSMUST00000228594 ENSMUSP00000153930 TRANSLATION protein_coding - CCDS27806.1 - 389.0 0.0 2.394 3.8 373.7 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022996 Wnt10b ENSMUST00000166022 ENSMUSP00000131056 TRANSLATION protein_coding - CCDS27806.1 1 389.0 0.0 2.394 3.8 373.7 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022996 Wnt10b ENSMUST00000228546 ENSMUSP00000154394 TRANSLATION protein_coding - - - 171.0 0.0 1.3 0.0 198.5 0.0 -4,-7 0.0 - 3.258 MINOR ENSMUSG00000022996 Wnt10b ENSMUST00000226655 ENSMUSP00000154384 TRANSLATION protein_coding - - - 173.0 0.0 1.744 0.0 94.8 0.0 1,-3 0.0012 - 4.368 MINOR ENSMUSG00000022996 Wnt10b ENSMUST00000226610 ENSMUSP00000153817 TRANSLATION protein_coding - CCDS27806.1 - 389.0 0.0 2.394 3.8 373.7 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022996 Wnt10b ENSMUST00000226846 ENSMUSP00000154513 TRANSLATION protein_coding - - - 293.0 0.0 2.13 0.0 198.5 0.0 1,-3 0.0022 - 5.34 MINOR ENSMUSG00000044309 Apol7c ENSMUST00000230863 ENSMUSP00000155510 TRANSLATION protein_coding stop - - 73.0 0.0 1.375 0.0 39.2 0.0 -4,-7 0.0442 - -2.0 MINOR ENSMUSG00000044309 Apol7c ENSMUST00000062562 ENSMUSP00000050745 TRANSLATION protein_coding - CCDS37127.1 1 369.0 0.0 1.375 0.4 433.9 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000047497 Adamts12 ENSMUST00000227189 - NO_TRANSLATION retained_intron ENSMUSG00000047497 Adamts12 ENSMUST00000228940 - NO_TRANSLATION retained_intron ENSMUSG00000047497 Adamts12 ENSMUST00000061318 ENSMUSP00000057796 TRANSLATION protein_coding - CCDS27384.1 1 1600.0 18.0 6.9 1.3 484.1 0.0 -2,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000022358 Fbxo32 ENSMUST00000022986 ENSMUSP00000022986 TRANSLATION protein_coding - CCDS27491.1 1 355.0 0.0 5.75 35.9 0.0 0.0 -4,-6 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000035828 Pim3 ENSMUST00000042818 ENSMUSP00000044603 TRANSLATION protein_coding - CCDS27734.1 1 326.0 19.0 4.5 5.4 197.0 0.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000035828 Pim3 ENSMUST00000229969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047641 Krt87 ENSMUST00000081945 ENSMUSP00000080613 TRANSLATION protein_coding - CCDS27852.1 1 495.0 0.0 4.47 0.4 358.1 0.0 -4,0 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022428 Cby1 ENSMUST00000230376 - NO_TRANSLATION retained_intron ENSMUSG00000022428 Cby1 ENSMUST00000023064 ENSMUSP00000023064 TRANSLATION protein_coding - CCDS27645.1 1 127.0 0.0 1.015 29.2 165.4 0.0 -4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000033055 Ankrd54 ENSMUST00000229322 - NO_TRANSLATION retained_intron ENSMUSG00000033055 Ankrd54 ENSMUST00000125523 ENSMUSP00000120492 TRANSLATION protein_coding start - 3 86.0 0.0 1.12 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033055 Ankrd54 ENSMUST00000133541 - NO_TRANSLATION retained_intron ENSMUSG00000033055 Ankrd54 ENSMUST00000151889 ENSMUSP00000114322 TRANSLATION protein_coding stop - 3 200.0 0.0 2.2675 0.0 39.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033055 Ankrd54 ENSMUST00000153003 ENSMUSP00000117852 TRANSLATION nonsense_mediated_decay - - 3 137.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033055 Ankrd54 ENSMUST00000156411 ENSMUSP00000119739 TRANSLATION protein_coding start - 2 83.0 0.0 1.65 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000033055 Ankrd54 ENSMUST00000040676 ENSMUSP00000047042 TRANSLATION protein_coding - CCDS37139.1 1 299.0 0.0 4.7 2.6 68.5 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000033055 Ankrd54 ENSMUST00000128631 - NO_TRANSLATION retained_intron ENSMUSG00000023033 Scn8a ENSMUST00000108908 ENSMUSP00000104536 TRANSLATION protein_coding - CCDS57011.1 5 1978.0 4.0 18.4925 13.2 1342.0 24.0 -4,-5 0.9489 16 17.246 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000201246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023033 Scn8a ENSMUST00000082209 ENSMUSP00000080842 TRANSLATION protein_coding - CCDS57010.1 5 1978.0 4.0 19.4925 13.2 1344.7 27.0 -4,-5 1.0 16 19.406 PRINCIPAL:1 ENSMUSG00000023033 Scn8a ENSMUST00000202971 - NO_TRANSLATION retained_intron ENSMUSG00000023033 Scn8a ENSMUST00000202071 ENSMUSP00000144501 TRANSLATION protein_coding stop - 1 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0309 - -2.0 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000202347 - NO_TRANSLATION retained_intron ENSMUSG00000023033 Scn8a ENSMUST00000200963 ENSMUSP00000144371 TRANSLATION protein_coding - - 5 1937.0 4.0 18.4925 7.5 1234.2 27.0 -4,-5 0.5693 16 10.134 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000202527 ENSMUSP00000143898 TRANSLATION protein_coding stop - 1 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0309 - -2.0 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000200959 ENSMUSP00000144223 TRANSLATION protein_coding - - 3 100.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 2 0.0 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000201518 ENSMUSP00000143879 TRANSLATION protein_coding stop - 1 804.0 0.0 9.38 0.0 552.8 13.0 -4,-5 0.0076 10 -2.0 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000108909 ENSMUSP00000104537 TRANSLATION protein_coding - - 5 1988.0 4.0 18.6245 6.0 1354.6 24.0 -4,-5 0.6477 15 15.906 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000201484 ENSMUSP00000144582 TRANSLATION protein_coding stop - 1 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0309 - -2.0 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000108910 ENSMUSP00000104538 TRANSLATION protein_coding - CCDS57011.1 1 1978.0 4.0 18.4925 13.2 1342.0 24.0 -4,-5 0.9489 16 17.246 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000201549 ENSMUSP00000144013 TRANSLATION protein_coding - CCDS57010.1 5 1978.0 4.0 19.4925 13.2 1344.7 27.0 -4,-5 1.0 16 19.406 PRINCIPAL:1 ENSMUSG00000023033 Scn8a ENSMUST00000202349 - NO_TRANSLATION retained_intron ENSMUSG00000023033 Scn8a ENSMUST00000096198 ENSMUSP00000093912 TRANSLATION protein_coding - - 1 102.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 2 0.0 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000200933 ENSMUSP00000144173 TRANSLATION protein_coding stop - 1 1.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0309 - -2.0 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000201438 ENSMUSP00000144232 TRANSLATION protein_coding start - 3 132.0 0.0 3.43 0.0 112.2 7.0 -1,-5 0.0022 1 -2.0 MINOR ENSMUSG00000023033 Scn8a ENSMUST00000202452 - NO_TRANSLATION retained_intron ENSMUSG00000023033 Scn8a ENSMUST00000202702 ENSMUSP00000143876 TRANSLATION protein_coding start/stop - 5 539.0 0.0 6.382 0.0 491.0 9.0 -4,-6 0.0076 5 -2.0 MINOR ENSMUSG00000071724 Smpd5 ENSMUST00000163991 ENSMUSP00000134687 TRANSLATION protein_coding - CCDS56988.1 1 483.0 0.0 3.448 0.4 26.2 0.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000071724 Smpd5 ENSMUST00000096370 - NO_TRANSLATION retained_intron ENSMUSG00000071724 Smpd5 ENSMUST00000171192 ENSMUSP00000133693 TRANSLATION nonsense_mediated_decay start - 3 117.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071724 Smpd5 ENSMUST00000167433 - NO_TRANSLATION retained_intron ENSMUSG00000022408 Fam83f ENSMUST00000023044 ENSMUSP00000023044 TRANSLATION protein_coding - CCDS49672.1 1 495.0 0.0 1.8 0.1 359.7 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000035944 Ttc38 ENSMUST00000124011 ENSMUSP00000118863 TRANSLATION nonsense_mediated_decay - - 2 62.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0004 3 -2.0 MINOR ENSMUSG00000035944 Ttc38 ENSMUST00000146088 ENSMUSP00000114504 TRANSLATION protein_coding - CCDS27724.2 1 465.0 0.0 11.33 8.6 0.0 0.0 -4,-5 1.0 22 9.0 PRINCIPAL:1 ENSMUSG00000035944 Ttc38 ENSMUST00000133158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000116138 C030006K11Rik ENSMUST00000230559 - NO_TRANSLATION retained_intron ENSMUSG00000116138 C030006K11Rik ENSMUST00000228990 ENSMUSP00000155349 TRANSLATION nonsense_mediated_decay - - - 143.0 0.0 0.8 0.0 36.0 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000116138 C030006K11Rik ENSMUST00000231059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000116138 C030006K11Rik ENSMUST00000036247 ENSMUSP00000039910 TRANSLATION protein_coding - CCDS27591.1 1 218.0 0.0 2.3 2.7 263.3 0.0 -4,0 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000116138 C030006K11Rik ENSMUST00000229507 - NO_TRANSLATION retained_intron ENSMUSG00000116138 C030006K11Rik ENSMUST00000230372 - NO_TRANSLATION retained_intron ENSMUSG00000025370 Cdh9 ENSMUST00000228307 ENSMUSP00000154022 TRANSLATION protein_coding - CCDS49584.1 - 788.0 46.0 9.78 21.6 435.5 1.0 -2,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000025370 Cdh9 ENSMUST00000026432 ENSMUSP00000026432 TRANSLATION protein_coding - CCDS49584.1 5 788.0 46.0 9.78 21.6 435.5 1.0 -2,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000068099 Smim45 ENSMUST00000143238 ENSMUSP00000120070 TRANSLATION protein_coding - - 1 68.0 0.0 0.0 3.0 0.0 1.0 0,-5 0.6278 - 1.0 PRINCIPAL:1 ENSMUSG00000068099 Smim45 ENSMUST00000136948 ENSMUSP00000115748 TRANSLATION protein_coding - - 3 68.0 0.0 0.0 3.0 0.0 1.0 0,-5 0.6278 - 1.0 PRINCIPAL:1 ENSMUSG00000045763 Basp1 ENSMUST00000228597 ENSMUSP00000154675 TRANSLATION protein_coding stop - - 17.0 2.0 0.0 0.0 28.2 0.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000045763 Basp1 ENSMUST00000058845 ENSMUSP00000053943 TRANSLATION protein_coding - CCDS27398.1 1 226.0 2.0 0.0 0.0 234.8 0.0 -4,-5 1.0 14 8.0 PRINCIPAL:1 ENSMUSG00000037487 Ubr5 ENSMUST00000226629 - NO_TRANSLATION retained_intron ENSMUSG00000037487 Ubr5 ENSMUST00000226137 - NO_TRANSLATION retained_intron ENSMUSG00000037487 Ubr5 ENSMUST00000228101 - NO_TRANSLATION retained_intron ENSMUSG00000037487 Ubr5 ENSMUST00000228504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037487 Ubr5 ENSMUST00000227143 ENSMUSP00000153778 TRANSLATION protein_coding start - - 142.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000037487 Ubr5 ENSMUST00000228029 - NO_TRANSLATION retained_intron ENSMUSG00000037487 Ubr5 ENSMUST00000226369 - NO_TRANSLATION retained_intron ENSMUSG00000037487 Ubr5 ENSMUST00000226414 ENSMUSP00000154293 TRANSLATION protein_coding - CCDS49595.1 - 2798.0 4.0 7.462 13.0 395.8 0.0 -4,-5 1.0 49 16.0 PRINCIPAL:4 ENSMUSG00000037487 Ubr5 ENSMUST00000228333 ENSMUSP00000154132 TRANSLATION nonsense_mediated_decay start - - 101.0 0.0 0.905 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037487 Ubr5 ENSMUST00000228174 - NO_TRANSLATION retained_intron ENSMUSG00000037487 Ubr5 ENSMUST00000228804 - NO_TRANSLATION retained_intron ENSMUSG00000037487 Ubr5 ENSMUST00000110336 ENSMUSP00000105965 TRANSLATION protein_coding - - 5 2792.0 4.0 7.462 13.0 395.8 0.0 -4,-5 0.8641 49 16.0 ALTERNATIVE:1 ENSMUSG00000037487 Ubr5 ENSMUST00000228368 - NO_TRANSLATION retained_intron ENSMUSG00000037487 Ubr5 ENSMUST00000228292 - NO_TRANSLATION retained_intron ENSMUSG00000051853 Arf3 ENSMUST00000156572 ENSMUSP00000114739 TRANSLATION protein_coding stop - 2 49.0 7.0 1.0 0.0 56.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000051853 Arf3 ENSMUST00000129354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051853 Arf3 ENSMUST00000053183 ENSMUSP00000050689 TRANSLATION protein_coding - CCDS27804.1 1 181.0 19.0 4.0 35.4 263.2 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000056605 Krt72 ENSMUST00000071104 ENSMUSP00000065922 TRANSLATION protein_coding - CCDS27863.1 2 520.0 0.0 4.75 8.3 407.8 0.0 -4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000056605 Krt72 ENSMUST00000127671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022378 Cyrib ENSMUST00000227024 ENSMUSP00000153790 TRANSLATION protein_coding stop - - 114.0 0.0 3.5 0.0 125.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022378 Cyrib ENSMUST00000226129 - NO_TRANSLATION retained_intron ENSMUSG00000022378 Cyrib ENSMUST00000228908 ENSMUSP00000154547 TRANSLATION protein_coding stop - - 190.0 0.0 5.75 0.0 263.2 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000022378 Cyrib ENSMUST00000228226 ENSMUSP00000154320 TRANSLATION protein_coding - CCDS27505.1 - 324.0 0.0 9.75 18.5 505.8 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000022378 Cyrib ENSMUST00000227118 - NO_TRANSLATION retained_intron ENSMUSG00000022378 Cyrib ENSMUST00000226675 ENSMUSP00000154205 TRANSLATION protein_coding stop - - 76.0 0.0 2.08 0.0 74.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022378 Cyrib ENSMUST00000164532 ENSMUSP00000132486 TRANSLATION protein_coding - CCDS27505.1 1 324.0 0.0 9.75 18.5 505.8 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000022378 Cyrib ENSMUST00000063838 ENSMUSP00000066359 TRANSLATION protein_coding - CCDS27505.1 1 324.0 0.0 9.75 18.5 505.8 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000118670 Muc19 ENSMUST00000239545 ENSMUSP00000159433 TRANSLATION protein_coding - - - 7524.0 0.0 9.292 0.0 373.3 0.0 4,-1 1.0 37 12.0 PRINCIPAL:1 ENSMUSG00000091119 Ccdc152 ENSMUST00000226261 ENSMUSP00000153730 TRANSLATION protein_coding - CCDS49571.1 - 254.0 0.0 0.0 9.1 0.0 0.0 -4,-5 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000091119 Ccdc152 ENSMUST00000228405 ENSMUSP00000153740 TRANSLATION protein_coding stop - - 163.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0117 - -2.0 MINOR ENSMUSG00000091119 Ccdc152 ENSMUST00000165386 ENSMUSP00000129305 TRANSLATION protein_coding - CCDS49571.1 5 254.0 0.0 0.0 9.1 0.0 0.0 -4,-5 1.0 - 3.0 PRINCIPAL:1 ENSMUSG00000048077 H1f7 ENSMUST00000060855 ENSMUSP00000127616 TRANSLATION protein_coding - CCDS49721.1 - 398.0 0.0 0.4 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000036678 Aaas ENSMUST00000230239 ENSMUSP00000155734 TRANSLATION protein_coding start/stop - - 147.0 0.0 1.298 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000036678 Aaas ENSMUST00000230812 - NO_TRANSLATION retained_intron ENSMUSG00000036678 Aaas ENSMUST00000230710 - NO_TRANSLATION retained_intron ENSMUSG00000036678 Aaas ENSMUST00000228959 ENSMUSP00000154915 TRANSLATION protein_coding start - - 97.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000036678 Aaas ENSMUST00000231061 ENSMUSP00000155757 TRANSLATION protein_coding stop - - 299.0 0.0 2.67 0.0 26.9 0.0 -4,-6 0.0058 3 -2.0 MINOR ENSMUSG00000036678 Aaas ENSMUST00000229900 ENSMUSP00000155299 TRANSLATION nonsense_mediated_decay start - - 64.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036678 Aaas ENSMUST00000231099 - NO_TRANSLATION retained_intron ENSMUSG00000036678 Aaas ENSMUST00000229315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036678 Aaas ENSMUST00000230406 ENSMUSP00000155778 TRANSLATION nonsense_mediated_decay start - - 55.0 0.0 0.6 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000036678 Aaas ENSMUST00000041208 ENSMUSP00000044604 TRANSLATION protein_coding - CCDS27880.1 1 546.0 0.0 3.895 9.1 26.9 0.0 -4,-6 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000036678 Aaas ENSMUST00000230349 - NO_TRANSLATION retained_intron ENSMUSG00000036678 Aaas ENSMUST00000229589 - NO_TRANSLATION retained_intron ENSMUSG00000036678 Aaas ENSMUST00000230481 ENSMUSP00000155527 TRANSLATION nonsense_mediated_decay start - - 183.0 0.0 0.797 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000055114 Anxa13 ENSMUST00000227274 ENSMUSP00000159441 TRANSLATION protein_coding - - - 317.0 19.0 8.5 21.1 342.7 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000054196 Cthrc1 ENSMUST00000144800 - NO_TRANSLATION retained_intron ENSMUSG00000054196 Cthrc1 ENSMUST00000067072 ENSMUSP00000070018 TRANSLATION protein_coding - CCDS27442.1 1 245.0 0.0 2.8 6.8 29.4 0.0 3,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000054196 Cthrc1 ENSMUST00000226433 ENSMUSP00000153886 TRANSLATION protein_coding - - - 171.0 0.0 2.3 0.0 0.0 0.0 3,-2 0.001 1 4.926 MINOR ENSMUSG00000054196 Cthrc1 ENSMUST00000132192 ENSMUSP00000154739 TRANSLATION protein_coding start - 3 102.0 0.0 0.8 0.0 29.4 0.0 -4,-6 0.0106 2 -2.0 MINOR ENSMUSG00000054409 Tmem74 ENSMUST00000067469 ENSMUSP00000070748 TRANSLATION protein_coding - CCDS27454.1 1 305.0 0.0 0.0 11.0 35.6 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000023030 Slc11a2 ENSMUST00000154331 ENSMUSP00000115357 TRANSLATION protein_coding stop - 1 110.0 0.0 0.132 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000023030 Slc11a2 ENSMUST00000138843 ENSMUSP00000116463 TRANSLATION protein_coding - CCDS49733.1 1 561.0 0.0 12.712 4.4 402.6 8.0 -4,-5 0.5479 2 12.963 MINOR ENSMUSG00000023030 Slc11a2 ENSMUST00000124324 ENSMUSP00000114702 TRANSLATION protein_coding start - 2 220.0 0.0 5.25 0.0 129.3 3.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000023030 Slc11a2 ENSMUST00000136168 ENSMUSP00000115283 TRANSLATION nonsense_mediated_decay - - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000023030 Slc11a2 ENSMUST00000123461 ENSMUSP00000119056 TRANSLATION protein_coding stop - 3 170.0 0.0 3.132 0.0 102.4 1.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000023030 Slc11a2 ENSMUST00000140535 - NO_TRANSLATION retained_intron ENSMUSG00000023030 Slc11a2 ENSMUST00000023774 ENSMUSP00000023774 TRANSLATION protein_coding - CCDS37211.1 1 568.0 0.0 12.712 11.6 402.6 8.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000023030 Slc11a2 ENSMUST00000154676 ENSMUSP00000115019 TRANSLATION protein_coding stop - 5 50.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022596 Slurp1 ENSMUST00000023261 ENSMUSP00000023261 TRANSLATION protein_coding - - 5 93.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0046 - 0.0 MINOR ENSMUSG00000022596 Slurp1 ENSMUST00000190433 ENSMUSP00000141013 TRANSLATION protein_coding - CCDS27528.1 1 110.0 0.0 2.33 1.1 26.0 0.0 3,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000022568 Scrib ENSMUST00000109946 ENSMUSP00000105572 TRANSLATION protein_coding - CCDS79382.1 1 1637.0 0.0 17.4 0.4 338.4 0.0 -4,-7 0.6049 35 8.0 ALTERNATIVE:2 ENSMUSG00000022568 Scrib ENSMUST00000229896 - NO_TRANSLATION retained_intron ENSMUSG00000022568 Scrib ENSMUST00000230217 - NO_TRANSLATION retained_intron ENSMUSG00000022568 Scrib ENSMUST00000231218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022568 Scrib ENSMUST00000148211 ENSMUSP00000114573 TRANSLATION protein_coding stop - 2 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022568 Scrib ENSMUST00000229940 - NO_TRANSLATION retained_intron ENSMUSG00000022568 Scrib ENSMUST00000145830 ENSMUSP00000115329 TRANSLATION protein_coding stop - 2 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022568 Scrib ENSMUST00000230104 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022568 Scrib ENSMUST00000136390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022568 Scrib ENSMUST00000002603 ENSMUSP00000002603 TRANSLATION protein_coding - CCDS27560.1 1 1665.0 0.0 17.4 0.4 338.4 0.0 -4,-7 1.0 36 8.0 PRINCIPAL:2 ENSMUSG00000022568 Scrib ENSMUST00000063747 ENSMUSP00000068056 TRANSLATION protein_coding - CCDS79381.1 1 1612.0 0.0 17.4 0.4 338.4 0.0 -4,-7 0.5455 35 8.0 ALTERNATIVE:2 ENSMUSG00000022568 Scrib ENSMUST00000230249 - NO_TRANSLATION retained_intron ENSMUSG00000116024 Gm49527 ENSMUST00000230214 ENSMUSP00000155009 TRANSLATION protein_coding,RT - - - 86.0 0.0 1.6 1.2 74.6 0.0 -4,-5 0.7411 - -2.0 PRINCIPAL:1 ENSMUSG00000116024 Gm49527 ENSMUST00000229782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036925 Mucl2 ENSMUST00000037685 ENSMUSP00000044814 TRANSLATION protein_coding - CCDS57015.1 1 138.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.9507 - 0.0 PRINCIPAL:2 ENSMUSG00000036925 Mucl2 ENSMUST00000226584 ENSMUSP00000154772 TRANSLATION protein_coding - - - 146.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.129 - 0.0 ALTERNATIVE:2 ENSMUSG00000046834 Krt1 ENSMUST00000023790 ENSMUSP00000023790 TRANSLATION protein_coding - CCDS37221.1 1 637.0 0.0 4.95 0.0 546.1 0.0 -4,0 1.0 29 12.0 PRINCIPAL:1 ENSMUSG00000046834 Krt1 ENSMUST00000230798 - NO_TRANSLATION retained_intron ENSMUSG00000046834 Krt1 ENSMUST00000231047 - NO_TRANSLATION retained_intron ENSMUSG00000037075 Rnf139 ENSMUST00000226908 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037075 Rnf139 ENSMUST00000036904 ENSMUSP00000046467 TRANSLATION protein_coding - CCDS27494.1 1 668.0 8.0 0.0 8.5 646.1 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000116461 Gm44502 ENSMUST00000052315 ENSMUSP00000154958 TRANSLATION nonsense_mediated_decay,RT - - 2 180.0 9.0 2.6 0.0 53.0 0.0 -4,-5 0.7383 - -2.0 PRINCIPAL:1 ENSMUSG00000037343 Taf2 ENSMUST00000041733 ENSMUSP00000043733 TRANSLATION protein_coding - CCDS37075.1 1 1198.0 0.0 20.8 10.4 0.0 0.0 -4,-5 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000037343 Taf2 ENSMUST00000228896 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037343 Taf2 ENSMUST00000226864 - NO_TRANSLATION retained_intron ENSMUSG00000037343 Taf2 ENSMUST00000228345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037343 Taf2 ENSMUST00000227254 - NO_TRANSLATION retained_intron ENSMUSG00000037343 Taf2 ENSMUST00000228360 - NO_TRANSLATION retained_intron ENSMUSG00000047108 Dnajb7 ENSMUST00000057236 ENSMUSP00000100712 TRANSLATION protein_coding - CCDS37148.1 - 312.0 0.0 0.4 3.1 93.4 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000006378 Gcat ENSMUST00000006544 ENSMUSP00000006544 TRANSLATION protein_coding - CCDS27630.1 1 416.0 15.0 9.25 15.8 237.8 0.0 -4,0 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000006378 Gcat ENSMUST00000229276 ENSMUSP00000155003 TRANSLATION protein_coding start/stop - - 227.0 12.0 5.58 0.0 167.1 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000055782 Abcd2 ENSMUST00000069511 ENSMUSP00000068940 TRANSLATION protein_coding - CCDS27760.1 1 741.0 12.0 5.758 9.8 421.2 0.0 -4,0 1.0 24 21.0 PRINCIPAL:1 ENSMUSG00000055782 Abcd2 ENSMUST00000230461 - NO_TRANSLATION retained_intron ENSMUSG00000055782 Abcd2 ENSMUST00000229909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022420 Dnal4 ENSMUST00000162713 ENSMUSP00000154848 TRANSLATION protein_coding - CCDS27650.1 3 105.0 0.0 2.65 22.2 96.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022420 Dnal4 ENSMUST00000230645 ENSMUSP00000154908 TRANSLATION protein_coding start - - 59.0 0.0 0.9 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022420 Dnal4 ENSMUST00000023055 ENSMUSP00000023055 TRANSLATION protein_coding - CCDS27650.1 1 105.0 0.0 2.65 22.2 96.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022420 Dnal4 ENSMUST00000229644 ENSMUSP00000155613 TRANSLATION protein_coding - - - 77.0 0.0 1.9 0.0 67.3 0.0 -4,-5 0.0 1 8.508 MINOR ENSMUSG00000022420 Dnal4 ENSMUST00000161646 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022420 Dnal4 ENSMUST00000069877 ENSMUSP00000070325 TRANSLATION protein_coding - - 5 139.0 0.0 1.9 0.0 75.7 0.0 -4,-5 0.0008 1 9.036 MINOR ENSMUSG00000056665 Them6 ENSMUST00000070923 ENSMUSP00000069692 TRANSLATION protein_coding - CCDS27527.1 1 207.0 0.0 2.0 7.5 80.4 0.0 2,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000053929 Zftraf1 ENSMUST00000229524 ENSMUSP00000155816 TRANSLATION protein_coding - - - 272.0 7.0 2.2 0.1 0.0 0.0 -4,-5 0.0494 2 12.0 ALTERNATIVE:2 ENSMUSG00000053929 Zftraf1 ENSMUST00000229541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053929 Zftraf1 ENSMUST00000229552 - NO_TRANSLATION retained_intron ENSMUSG00000053929 Zftraf1 ENSMUST00000176274 ENSMUSP00000134739 TRANSLATION protein_coding - CCDS70643.1 1 412.0 7.0 2.2 0.0 0.0 0.0 -4,-5 0.9456 2 12.0 PRINCIPAL:2 ENSMUSG00000022579 Gpihbp1 ENSMUST00000189874 ENSMUSP00000139792 TRANSLATION protein_coding - - 1 111.0 0.0 1.198 0.0 0.0 0.0 4,-1 0.002 - 3.996 MINOR ENSMUSG00000022579 Gpihbp1 ENSMUST00000023243 ENSMUSP00000023243 TRANSLATION protein_coding - CCDS27545.1 1 228.0 0.0 1.8 0.0 22.3 0.0 4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000022579 Gpihbp1 ENSMUST00000189944 ENSMUSP00000139511 TRANSLATION protein_coding - CCDS84173.1 2 123.0 0.0 1.0 0.0 0.0 0.0 4,-1 0.0541 - 3.336 MINOR ENSMUSG00000022579 Gpihbp1 ENSMUST00000190119 - NO_TRANSLATION retained_intron ENSMUSG00000022579 Gpihbp1 ENSMUST00000186934 - NO_TRANSLATION retained_intron ENSMUSG00000048230 Fbxo43 ENSMUST00000058643 ENSMUSP00000054125 TRANSLATION protein_coding - CCDS37060.1 1 641.0 3.0 1.198 0.0 26.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048230 Fbxo43 ENSMUST00000227793 ENSMUSP00000154351 TRANSLATION protein_coding stop - - 162.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000048230 Fbxo43 ENSMUST00000227781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056851 Pcbp2 ENSMUST00000230682 ENSMUSP00000155638 TRANSLATION protein_coding start/stop - - 192.0 0.0 4.38375 0.0 91.1 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000229618 ENSMUSP00000155430 TRANSLATION protein_coding - CCDS49742.1 - 331.0 0.0 8.24175 15.8 183.9 0.0 -4,-5 1.0 6 11.484 ALTERNATIVE:1 ENSMUSG00000056851 Pcbp2 ENSMUST00000230282 - NO_TRANSLATION retained_intron ENSMUSG00000056851 Pcbp2 ENSMUST00000229854 ENSMUSP00000155038 TRANSLATION protein_coding - CCDS27884.1 - 349.0 0.0 8.14175 14.8 183.9 0.0 -4,-5 0.9803 6 11.05 ALTERNATIVE:1 ENSMUSG00000056851 Pcbp2 ENSMUST00000230211 ENSMUSP00000155440 TRANSLATION protein_coding stop - - 190.0 0.0 4.20375 0.0 82.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000229102 ENSMUSP00000155096 TRANSLATION protein_coding stop - - 224.0 0.0 5.28375 0.0 117.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000230129 - NO_TRANSLATION retained_intron ENSMUSG00000056851 Pcbp2 ENSMUST00000229918 ENSMUSP00000155072 TRANSLATION protein_coding - - - 335.0 0.0 8.24175 15.8 183.9 0.0 -4,-5 0.8387 7 11.484 ALTERNATIVE:1 ENSMUSG00000056851 Pcbp2 ENSMUST00000229822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056851 Pcbp2 ENSMUST00000229533 ENSMUSP00000155219 TRANSLATION protein_coding start/stop - - 225.0 0.0 5.13375 0.0 81.2 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000229746 ENSMUSP00000155016 TRANSLATION protein_coding stop - - 205.0 0.0 4.53375 0.0 82.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000108838 ENSMUSP00000104466 TRANSLATION protein_coding - - 2 322.0 0.0 8.14175 18.0 183.9 0.0 -4,-5 0.8926 7 11.802 PRINCIPAL:4 ENSMUSG00000056851 Pcbp2 ENSMUST00000229061 ENSMUSP00000154930 TRANSLATION protein_coding start - - 184.0 0.0 2.98175 0.0 66.6 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000230918 ENSMUSP00000155569 TRANSLATION protein_coding start/stop - - 231.0 0.0 5.46375 0.0 91.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000230728 ENSMUSP00000155631 TRANSLATION protein_coding stop - - 280.0 0.0 5.71375 0.0 117.3 0.0 -4,-5 0.0011 5 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000229184 ENSMUSP00000155654 TRANSLATION protein_coding - - - 316.0 0.0 8.24175 9.2 183.9 0.0 -4,-5 0.7426 6 9.928 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000229958 ENSMUSP00000155784 TRANSLATION protein_coding stop - - 241.0 0.0 5.28375 0.0 117.3 0.0 -4,-5 0.0003 5 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000077037 ENSMUSP00000076294 TRANSLATION protein_coding - CCDS49741.1 1 362.0 0.0 8.24175 15.8 183.9 0.0 -4,-5 0.9773 6 11.484 ALTERNATIVE:1 ENSMUSG00000056851 Pcbp2 ENSMUST00000230577 ENSMUSP00000155825 TRANSLATION protein_coding start/stop - - 264.0 0.0 4.96375 0.0 91.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000230997 - NO_TRANSLATION retained_intron ENSMUSG00000056851 Pcbp2 ENSMUST00000229275 ENSMUSP00000155124 TRANSLATION protein_coding - - - 96.0 0.0 2.53 0.0 56.3 0.0 -4,-5 0.0 1 0.666 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000229219 ENSMUSP00000155730 TRANSLATION protein_coding start/stop - - 253.0 0.0 4.96375 0.0 100.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000229432 ENSMUSP00000155848 TRANSLATION protein_coding start - - 181.0 0.0 3.98175 0.0 66.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000230114 ENSMUSP00000155789 TRANSLATION protein_coding - - - 361.0 0.0 8.24175 15.8 183.9 0.0 -4,-5 0.8207 6 11.484 ALTERNATIVE:1 ENSMUSG00000056851 Pcbp2 ENSMUST00000229802 ENSMUSP00000155292 TRANSLATION protein_coding - - - 335.0 0.0 8.24175 15.8 183.9 0.0 -4,-5 0.8387 7 11.484 ALTERNATIVE:1 ENSMUSG00000056851 Pcbp2 ENSMUST00000230631 - NO_TRANSLATION retained_intron ENSMUSG00000056851 Pcbp2 ENSMUST00000229222 ENSMUSP00000155240 TRANSLATION protein_coding stop - - 168.0 0.0 5.16 0.0 117.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000231085 ENSMUSP00000155431 TRANSLATION protein_coding start - - 265.0 0.0 5.48175 0.0 127.6 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000230539 ENSMUSP00000155051 TRANSLATION protein_coding stop - - 186.0 0.0 4.20375 0.0 82.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000056851 Pcbp2 ENSMUST00000078404 ENSMUSP00000077509 TRANSLATION protein_coding - CCDS49741.1 2 362.0 0.0 8.24175 15.8 183.9 0.0 -4,-5 0.9773 6 11.484 ALTERNATIVE:1 ENSMUSG00000056851 Pcbp2 ENSMUST00000231089 ENSMUSP00000155548 TRANSLATION protein_coding stop - - 249.0 0.0 6.11375 0.0 117.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000041849 Card6 ENSMUST00000141020 ENSMUSP00000118817 TRANSLATION protein_coding stop - 2 194.0 0.0 0.6 0.0 59.8 0.0 -4,-5 0.0527 2 -2.0 MINOR ENSMUSG00000041849 Card6 ENSMUST00000118365 ENSMUSP00000112833 TRANSLATION protein_coding - CCDS49573.1 5 1175.0 0.0 0.6 0.0 59.8 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000022991 Lalba ENSMUST00000023726 ENSMUSP00000023726 TRANSLATION protein_coding - CCDS27795.1 1 143.0 6.0 3.25 10.9 180.6 0.0 3,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000000530 Acvrl1 ENSMUST00000130432 ENSMUSP00000122998 TRANSLATION protein_coding stop - 5 26.0 0.0 0.0 0.0 0.0 0.0 -1,-1 0.0 - -2.0 MINOR ENSMUSG00000000530 Acvrl1 ENSMUST00000120028 ENSMUSP00000113297 TRANSLATION protein_coding - CCDS37215.1 1 502.0 21.0 7.75 7.7 178.6 1.0 2,1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000000530 Acvrl1 ENSMUST00000119063 ENSMUSP00000113536 TRANSLATION protein_coding - CCDS37215.1 1 502.0 21.0 7.75 7.7 178.6 1.0 2,1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000000530 Acvrl1 ENSMUST00000000542 ENSMUSP00000000542 TRANSLATION protein_coding - CCDS37215.1 1 502.0 21.0 7.75 7.7 178.6 1.0 2,1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000000530 Acvrl1 ENSMUST00000124151 ENSMUSP00000114829 TRANSLATION protein_coding stop - 3 76.0 0.0 1.0 0.0 0.0 0.0 2,1 0.002 - -2.0 MINOR ENSMUSG00000000530 Acvrl1 ENSMUST00000144229 ENSMUSP00000115241 TRANSLATION protein_coding stop - 5 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0208 - -2.0 MINOR ENSMUSG00000000530 Acvrl1 ENSMUST00000128525 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000530 Acvrl1 ENSMUST00000128868 - NO_TRANSLATION retained_intron ENSMUSG00000000530 Acvrl1 ENSMUST00000121718 ENSMUSP00000114027 TRANSLATION protein_coding - CCDS37215.1 1 502.0 21.0 7.75 7.7 178.6 1.0 2,1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000000530 Acvrl1 ENSMUST00000120754 ENSMUSP00000112490 TRANSLATION protein_coding - CCDS37215.1 5 502.0 21.0 7.75 7.7 178.6 1.0 2,1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000000530 Acvrl1 ENSMUST00000117984 ENSMUSP00000113505 TRANSLATION protein_coding - CCDS37215.1 5 502.0 21.0 7.75 7.7 178.6 1.0 2,1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000033228 Scaf11 ENSMUST00000047835 ENSMUSP00000044898 TRANSLATION protein_coding - CCDS37186.1 5 1456.0 8.0 3.04 0.0 24.4 0.0 -4,-5 1.0 12 17.808 PRINCIPAL:1 ENSMUSG00000033228 Scaf11 ENSMUST00000228072 ENSMUSP00000154674 TRANSLATION protein_coding start - - 476.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000033228 Scaf11 ENSMUST00000227133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033228 Scaf11 ENSMUST00000228260 ENSMUSP00000154059 TRANSLATION nonsense_mediated_decay start - - 84.0 6.0 0.64 0.0 24.4 0.0 -4,-5 0.0071 - -2.0 MINOR ENSMUSG00000033228 Scaf11 ENSMUST00000227069 ENSMUSP00000154321 TRANSLATION nonsense_mediated_decay - - - 1389.0 8.0 0.79 0.0 24.4 0.0 -4,-5 0.1685 12 -2.0 MINOR ENSMUSG00000033228 Scaf11 ENSMUST00000228535 ENSMUSP00000154368 TRANSLATION protein_coding start/stop - - 232.0 6.0 0.64 0.0 25.2 0.0 -4,-6 0.0383 - -2.0 MINOR ENSMUSG00000067613 Krt83 ENSMUST00000023718 ENSMUSP00000023718 TRANSLATION protein_coding - CCDS49735.1 1 479.0 0.0 4.47 3.0 368.8 0.0 -4,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000067613 Krt83 ENSMUST00000159029 - NO_TRANSLATION retained_intron ENSMUSG00000022415 Syngr1 ENSMUST00000009727 ENSMUSP00000009727 TRANSLATION protein_coding - CCDS27657.1 1 234.0 0.0 3.6 11.5 111.4 6.0 -4,-7 1.0 2 11.0 PRINCIPAL:4 ENSMUSG00000022415 Syngr1 ENSMUST00000143928 ENSMUSP00000120696 TRANSLATION protein_coding stop - 3 111.0 0.0 1.816 0.0 77.2 4.0 -2,-5 0.0029 - -2.0 MINOR ENSMUSG00000022415 Syngr1 ENSMUST00000009728 ENSMUSP00000009728 TRANSLATION protein_coding - CCDS27658.1 1 191.0 0.0 3.4 10.6 108.7 6.0 -4,-7 0.8648 2 10.34 ALTERNATIVE:1 ENSMUSG00000022415 Syngr1 ENSMUST00000135727 ENSMUSP00000121716 TRANSLATION protein_coding start - 3 128.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022263 Trio ENSMUST00000226117 - NO_TRANSLATION retained_intron ENSMUSG00000022263 Trio ENSMUST00000228054 - NO_TRANSLATION retained_intron ENSMUSG00000022263 Trio ENSMUST00000226775 ENSMUSP00000154608 TRANSLATION protein_coding stop - - 178.0 0.0 0.0 0.0 33.7 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022263 Trio ENSMUST00000227999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022263 Trio ENSMUST00000227044 - NO_TRANSLATION retained_intron ENSMUSG00000022263 Trio ENSMUST00000226713 ENSMUSP00000154789 TRANSLATION protein_coding start/stop - - 184.0 0.0 2.464 0.0 76.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022263 Trio ENSMUST00000090247 ENSMUSP00000087714 TRANSLATION protein_coding - CCDS49587.1 5 3103.0 3.0 23.376 0.4 1294.1 0.0 -3,-6 1.0 51 15.0 PRINCIPAL:1 ENSMUSG00000022263 Trio ENSMUST00000226580 - NO_TRANSLATION retained_intron ENSMUSG00000022263 Trio ENSMUST00000228084 - NO_TRANSLATION retained_intron ENSMUSG00000022263 Trio ENSMUST00000227337 ENSMUSP00000154653 TRANSLATION protein_coding - - - 1849.0 0.0 10.232 0.0 719.6 0.0 -4,-5 0.0863 34 0.0 MINOR ENSMUSG00000022263 Trio ENSMUST00000228950 - NO_TRANSLATION retained_intron ENSMUSG00000022263 Trio ENSMUST00000226287 ENSMUSP00000154458 TRANSLATION protein_coding stop - - 132.0 0.0 0.0 0.0 167.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022263 Trio ENSMUST00000227642 - NO_TRANSLATION retained_intron ENSMUSG00000022263 Trio ENSMUST00000226644 ENSMUSP00000154309 TRANSLATION protein_coding start - - 1424.0 0.0 16.782 0.0 869.4 0.0 -4,-5 0.0894 25 -2.0 MINOR ENSMUSG00000022263 Trio ENSMUST00000227030 ENSMUSP00000153890 TRANSLATION nonsense_mediated_decay start - - 67.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0 1 -2.0 MINOR ENSMUSG00000022311 Csmd3 ENSMUST00000162830 ENSMUSP00000124775 TRANSLATION protein_coding - - 5 3707.0 36.0 36.2905 14.7 2009.3 0.0 -4,-6 0.8785 37 22.0 PRINCIPAL:1 ENSMUSG00000022311 Csmd3 ENSMUST00000160716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022311 Csmd3 ENSMUST00000161653 ENSMUSP00000124195 TRANSLATION protein_coding start - 1 2797.0 21.0 27.9205 0.0 1582.3 0.0 -4,-7 0.1205 32 -2.0 MINOR ENSMUSG00000022311 Csmd3 ENSMUST00000162006 - NO_TRANSLATION retained_intron ENSMUSG00000022311 Csmd3 ENSMUST00000100670 ENSMUSP00000098235 TRANSLATION protein_coding - CCDS49602.1 5 3707.0 36.0 36.253 14.7 2009.3 0.0 -4,-6 1.0 37 21.922 PRINCIPAL:1 ENSMUSG00000022311 Csmd3 ENSMUST00000161173 - NO_TRANSLATION retained_intron ENSMUSG00000022311 Csmd3 ENSMUST00000110261 - NO_TRANSLATION retained_intron ENSMUSG00000022311 Csmd3 ENSMUST00000160658 ENSMUSP00000124753 TRANSLATION protein_coding - - 5 3538.0 36.0 35.853 4.9 1978.8 0.0 -4,-6 0.3665 35 16.434 MINOR ENSMUSG00000022311 Csmd3 ENSMUST00000160655 - NO_TRANSLATION retained_intron ENSMUSG00000022468 Endou ENSMUST00000100249 ENSMUSP00000097820 TRANSLATION protein_coding - CCDS49712.1 1 412.0 0.0 5.85 9.8 401.7 0.0 3,-2 1.0 10 14.7 PRINCIPAL:1 ENSMUSG00000022468 Endou ENSMUST00000023105 ENSMUSP00000023105 TRANSLATION protein_coding - CCDS27783.1 1 454.0 0.0 6.0 0.0 363.9 0.0 -4,-7 0.1378 10 9.732 MINOR ENSMUSG00000022468 Endou ENSMUST00000230430 ENSMUSP00000155246 TRANSLATION nonsense_mediated_decay - - - 119.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000000555 Itga5 ENSMUST00000023128 ENSMUSP00000023128 TRANSLATION protein_coding - CCDS27903.1 1 1053.0 28.0 20.63 2.1 454.9 0.0 0,2 1.0 22 19.0 PRINCIPAL:1 ENSMUSG00000000555 Itga5 ENSMUST00000230460 - NO_TRANSLATION retained_intron ENSMUSG00000000555 Itga5 ENSMUST00000230775 - NO_TRANSLATION retained_intron ENSMUSG00000000555 Itga5 ENSMUST00000215331 ENSMUSP00000148865 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 0.6 0.0 0.0 0.0 0,2 0.0005 - -2.0 MINOR ENSMUSG00000022491 Glycam1 ENSMUST00000228060 ENSMUSP00000154735 TRANSLATION protein_coding - - - 149.0 0.0 0.0 0.3 186.6 0.0 4,-1 0.139 1 2.0 ALTERNATIVE:2 ENSMUSG00000022491 Glycam1 ENSMUST00000226679 - NO_TRANSLATION retained_intron ENSMUSG00000022491 Glycam1 ENSMUST00000228895 ENSMUSP00000153908 TRANSLATION protein_coding - - - 128.0 0.0 0.0 0.0 136.2 0.0 4,-1 0.0053 - 0.0 MINOR ENSMUSG00000022491 Glycam1 ENSMUST00000023134 ENSMUSP00000023134 TRANSLATION protein_coding - CCDS27905.1 1 151.0 0.0 0.0 0.3 196.4 0.0 4,-1 1.0 1 2.0 PRINCIPAL:2 ENSMUSG00000101026 Ly6g6g ENSMUST00000186014 ENSMUSP00000140350 TRANSLATION protein_coding start - 1 115.0 0.0 0.0 0.0 30.9 0.0 3,-2 0.1138 1 -2.0 MINOR ENSMUSG00000101026 Ly6g6g ENSMUST00000191407 ENSMUSP00000140804 TRANSLATION protein_coding - - 1 87.0 0.0 0.0 0.8 0.0 0.0 3,-2 0.4047 1 0.0 PRINCIPAL:1 ENSMUSG00000022244 Amacr ENSMUST00000228886 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022244 Amacr ENSMUST00000070877 ENSMUSP00000066915 TRANSLATION protein_coding - CCDS27381.1 1 381.0 0.0 5.0 15.9 0.0 0.0 -4,-7 1.0 12 10.0 PRINCIPAL:1 ENSMUSG00000022253 Nadk2 ENSMUST00000189437 ENSMUSP00000159407 TRANSLATION protein_coding start - 2 343.0 15.0 1.38375 0.0 0.0 0.0 -4,-7 0.0528 15 -2.0 MINOR ENSMUSG00000022253 Nadk2 ENSMUST00000189211 ENSMUSP00000159409 TRANSLATION protein_coding start - 5 157.0 9.0 0.87375 0.0 0.0 0.0 -4,-7 0.0236 5 -2.0 MINOR ENSMUSG00000022253 Nadk2 ENSMUST00000228453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022253 Nadk2 ENSMUST00000190591 ENSMUSP00000159405 TRANSLATION protein_coding - - 1 452.0 20.0 1.88375 1.1 0.0 0.0 -4,-1 0.6931 18 13.0 PRINCIPAL:1 ENSMUSG00000022253 Nadk2 ENSMUST00000186069 - NO_TRANSLATION retained_intron ENSMUSG00000022253 Nadk2 ENSMUST00000190874 ENSMUSP00000159408 TRANSLATION protein_coding start - 1 324.0 18.0 1.88375 0.0 0.0 0.0 -4,-7 0.0899 16 -2.0 MINOR ENSMUSG00000022253 Nadk2 ENSMUST00000227928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022253 Nadk2 ENSMUST00000188194 ENSMUSP00000140212 TRANSLATION protein_coding start - 3 38.0 2.0 0.5 0.0 0.0 0.0 -4,-6 0.0086 1 -2.0 MINOR ENSMUSG00000022253 Nadk2 ENSMUST00000227682 ENSMUSP00000159406 TRANSLATION protein_coding stop - - 102.0 5.0 0.45 0.0 0.0 0.0 -4,-7 0.0226 3 -2.0 MINOR ENSMUSG00000022253 Nadk2 ENSMUST00000228397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053137 Mapk11 ENSMUST00000088823 ENSMUSP00000086204 TRANSLATION protein_coding - CCDS27741.1 1 364.0 20.0 9.43 7.8 214.5 0.0 -4,-2 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000053137 Mapk11 ENSMUST00000230734 - NO_TRANSLATION retained_intron ENSMUSG00000053137 Mapk11 ENSMUST00000228967 - NO_TRANSLATION retained_intron ENSMUSG00000053137 Mapk11 ENSMUST00000230634 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049152 Ugt3a2 ENSMUST00000144755 - NO_TRANSLATION retained_intron ENSMUSG00000049152 Ugt3a2 ENSMUST00000072403 ENSMUSP00000072236 TRANSLATION protein_coding - CCDS27375.1 1 523.0 18.0 5.2 4.3 328.3 0.0 3,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000052253 Zfp622 ENSMUST00000227093 - NO_TRANSLATION retained_intron ENSMUSG00000052253 Zfp622 ENSMUST00000061875 ENSMUSP00000059678 TRANSLATION protein_coding - CCDS27400.1 1 476.0 7.0 0.0 2.2 100.0 0.0 -4,-7 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000052253 Zfp622 ENSMUST00000227912 - NO_TRANSLATION retained_intron ENSMUSG00000052253 Zfp622 ENSMUST00000226884 ENSMUSP00000153839 TRANSLATION protein_coding start/stop - - 241.0 4.0 0.0 0.0 43.1 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000036061 Smug1 ENSMUST00000231198 ENSMUSP00000155293 TRANSLATION protein_coding stop - - 144.0 1.0 2.0 0.0 0.0 0.0 -4,-5 0.0039 3 -2.0 MINOR ENSMUSG00000036061 Smug1 ENSMUST00000064067 ENSMUSP00000065835 TRANSLATION protein_coding - CCDS27898.1 2 279.0 1.0 3.0 0.4 0.0 0.0 -4,-5 0.9761 7 6.0 PRINCIPAL:1 ENSMUSG00000036061 Smug1 ENSMUST00000229371 ENSMUSP00000155594 TRANSLATION protein_coding - CCDS27898.1 - 279.0 1.0 3.0 0.4 0.0 0.0 -4,-5 0.9761 7 6.0 PRINCIPAL:1 ENSMUSG00000036061 Smug1 ENSMUST00000229377 ENSMUSP00000155700 TRANSLATION protein_coding - CCDS27898.1 - 279.0 1.0 3.0 0.4 0.0 0.0 -4,-5 0.9761 7 6.0 PRINCIPAL:1 ENSMUSG00000036061 Smug1 ENSMUST00000230529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036061 Smug1 ENSMUST00000229429 - NO_TRANSLATION retained_intron ENSMUSG00000002524 Puf60 ENSMUST00000227316 ENSMUSP00000154177 TRANSLATION nonsense_mediated_decay start - - 140.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000002524 Puf60 ENSMUST00000229496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002524 Puf60 ENSMUST00000002599 ENSMUSP00000002599 TRANSLATION protein_coding - CCDS37111.1 1 547.0 0.0 7.05 6.4 126.7 0.0 -4,-6 0.9084 18 9.572 PRINCIPAL:3 ENSMUSG00000002524 Puf60 ENSMUST00000100527 ENSMUSP00000098096 TRANSLATION protein_coding - CCDS37112.1 1 564.0 0.0 7.15 7.1 126.7 0.0 -4,-6 1.0 17 10.0 ALTERNATIVE:1 ENSMUSG00000002524 Puf60 ENSMUST00000229030 - NO_TRANSLATION retained_intron ENSMUSG00000002524 Puf60 ENSMUST00000230143 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002524 Puf60 ENSMUST00000227251 - NO_TRANSLATION retained_intron ENSMUSG00000002524 Puf60 ENSMUST00000229474 - NO_TRANSLATION retained_intron ENSMUSG00000002524 Puf60 ENSMUST00000228459 - NO_TRANSLATION retained_intron ENSMUSG00000002524 Puf60 ENSMUST00000230924 ENSMUSP00000155707 TRANSLATION nonsense_mediated_decay - - - 137.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000002524 Puf60 ENSMUST00000230968 - NO_TRANSLATION retained_intron ENSMUSG00000022269 Marchf11 ENSMUST00000140840 ENSMUSP00000118729 TRANSLATION protein_coding - CCDS27401.2 2 400.0 8.0 2.75 0.4 47.5 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000022269 Marchf11 ENSMUST00000152841 ENSMUSP00000120622 TRANSLATION protein_coding - CCDS79365.1 1 255.0 8.0 1.0 0.4 47.5 0.0 -4,-5 0.1209 1 14.184 MINOR ENSMUSG00000022269 Marchf11 ENSMUST00000126304 ENSMUSP00000153852 TRANSLATION protein_coding - - 1 252.0 8.0 1.36 0.0 47.5 0.0 -4,-5 0.0258 1 14.97 MINOR ENSMUSG00000022269 Marchf11 ENSMUST00000155819 - NO_TRANSLATION retained_intron ENSMUSG00000023032 Slc4a8 ENSMUST00000162483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023032 Slc4a8 ENSMUST00000023776 ENSMUSP00000023776 TRANSLATION protein_coding - CCDS37214.1 1 1089.0 0.0 11.5075 7.1 1163.1 3.0 -4,-5 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000023032 Slc4a8 ENSMUST00000161564 ENSMUSP00000123864 TRANSLATION protein_coding - - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000023032 Slc4a8 ENSMUST00000162805 - NO_TRANSLATION retained_intron ENSMUSG00000023032 Slc4a8 ENSMUST00000162744 - NO_TRANSLATION retained_intron ENSMUSG00000023032 Slc4a8 ENSMUST00000160256 - NO_TRANSLATION retained_intron ENSMUSG00000023032 Slc4a8 ENSMUST00000162049 ENSMUSP00000125090 TRANSLATION protein_coding - CCDS84193.1 1 1037.0 0.0 11.5075 3.4 1163.1 3.0 -4,-2 0.7339 11 12.786 MINOR ENSMUSG00000035805 Mlc1 ENSMUST00000109368 ENSMUSP00000104993 TRANSLATION protein_coding - - 1 388.0 0.0 0.0 0.7 0.0 2.0 -4,-5 0.1673 6 0.0 MINOR ENSMUSG00000035805 Mlc1 ENSMUST00000042594 ENSMUSP00000047667 TRANSLATION protein_coding - CCDS37173.1 1 382.0 0.0 0.0 10.9 0.0 2.0 -4,-5 1.0 6 3.0 PRINCIPAL:1 ENSMUSG00000029875 Ccdc184 ENSMUST00000031914 ENSMUSP00000031914 TRANSLATION protein_coding - CCDS49718.1 - 191.0 0.0 0.6 11.6 362.1 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000054115 Skp2 ENSMUST00000190131 ENSMUSP00000139997 TRANSLATION protein_coding - CCDS79360.1 1 389.0 0.0 7.5 0.0 51.5 0.0 -4,-5 0.1307 3 12.0 MINOR ENSMUSG00000054115 Skp2 ENSMUST00000191316 - NO_TRANSLATION retained_intron ENSMUSG00000054115 Skp2 ENSMUST00000096482 ENSMUSP00000094225 TRANSLATION protein_coding - CCDS37037.1 1 424.0 0.0 7.5 13.5 51.5 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000054115 Skp2 ENSMUST00000190406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054115 Skp2 ENSMUST00000110585 ENSMUSP00000106215 TRANSLATION protein_coding - - 1 354.0 0.0 6.5 0.0 51.5 0.0 -4,-5 0.054 2 10.002 MINOR ENSMUSG00000001281 Itgb7 ENSMUST00000127014 ENSMUSP00000123227 TRANSLATION protein_coding stop - 3 83.0 0.0 0.6 0.0 46.5 0.0 3,-1 0.0 - -2.0 MINOR ENSMUSG00000001281 Itgb7 ENSMUST00000229440 ENSMUSP00000155744 TRANSLATION protein_coding start - - 98.0 0.0 0.2 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000001281 Itgb7 ENSMUST00000001327 ENSMUSP00000001327 TRANSLATION protein_coding - CCDS49740.1 1 806.0 13.0 12.06 0.1 522.1 0.0 3,-1 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000001281 Itgb7 ENSMUST00000230550 - NO_TRANSLATION retained_intron ENSMUSG00000001281 Itgb7 ENSMUST00000230652 ENSMUSP00000155705 TRANSLATION protein_coding stop - - 10.0 1.0 0.33 0.0 0.0 0.0 -4,-5 0.0207 - -2.0 MINOR ENSMUSG00000033099 Nol12 ENSMUST00000041164 ENSMUSP00000042908 TRANSLATION protein_coding start - 3 195.0 0.0 1.96 0.0 62.4 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000033099 Nol12 ENSMUST00000123013 ENSMUSP00000121877 TRANSLATION protein_coding stop - 5 83.0 0.0 1.0 0.0 39.7 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000033099 Nol12 ENSMUST00000138880 ENSMUSP00000116103 TRANSLATION protein_coding - CCDS27629.1 1 217.0 0.0 2.96 11.0 60.7 0.0 -4,-5 1.0 1 14.838 PRINCIPAL:1 ENSMUSG00000033099 Nol12 ENSMUST00000145157 ENSMUSP00000122905 TRANSLATION protein_coding stop - 5 15.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022237 Ankrd33b ENSMUST00000227391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022237 Ankrd33b ENSMUST00000156679 ENSMUSP00000117974 TRANSLATION nonsense_mediated_decay - - 1 190.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022237 Ankrd33b ENSMUST00000044324 ENSMUSP00000037918 TRANSLATION nonsense_mediated_decay - - 1 127.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022237 Ankrd33b ENSMUST00000123325 ENSMUSP00000118984 TRANSLATION protein_coding - CCDS49589.1 1 486.0 0.0 3.06 0.4 47.9 0.0 -4,-5 0.5646 5 6.0 MINOR ENSMUSG00000022237 Ankrd33b ENSMUST00000076942 ENSMUSP00000076209 TRANSLATION protein_coding - CCDS27409.1 1 128.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0447 2 0.54 MINOR ENSMUSG00000022237 Ankrd33b ENSMUST00000110410 ENSMUSP00000106040 TRANSLATION protein_coding - CCDS27408.1 1 477.0 0.0 2.73 0.0 55.8 0.0 -4,-5 0.9437 5 7.34 PRINCIPAL:1 ENSMUSG00000022237 Ankrd33b ENSMUST00000227867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022249 Ttc23l ENSMUST00000166039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022249 Ttc23l ENSMUST00000167842 ENSMUSP00000155921 TRANSLATION protein_coding - - 3 453.0 0.0 3.53 0.1 31.2 0.0 -4,-1 0.2109 - 8.0 ALTERNATIVE:2 ENSMUSG00000022249 Ttc23l ENSMUST00000022857 ENSMUSP00000022857 TRANSLATION protein_coding - CCDS49582.1 1 458.0 0.0 3.53 0.0 31.2 0.0 -4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000022401 Xpnpep3 ENSMUST00000166831 - NO_TRANSLATION retained_intron ENSMUSG00000022401 Xpnpep3 ENSMUST00000164144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022401 Xpnpep3 ENSMUST00000163296 - NO_TRANSLATION retained_intron ENSMUSG00000022401 Xpnpep3 ENSMUST00000165258 ENSMUSP00000130255 TRANSLATION nonsense_mediated_decay - - 5 69.0 0.0 0.8 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000022401 Xpnpep3 ENSMUST00000163754 ENSMUSP00000132822 TRANSLATION protein_coding - CCDS84182.1 1 506.0 15.0 8.63 11.1 313.9 0.0 -4,0 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000022401 Xpnpep3 ENSMUST00000041609 ENSMUSP00000038331 TRANSLATION protein_coding - CCDS27668.1 1 386.0 7.0 5.3 0.0 199.9 0.0 -4,0 0.0033 4 0.666 MINOR ENSMUSG00000022401 Xpnpep3 ENSMUST00000167799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022469 Rapgef3 ENSMUST00000142196 - NO_TRANSLATION retained_intron ENSMUSG00000022469 Rapgef3 ENSMUST00000155810 - NO_TRANSLATION retained_intron ENSMUSG00000022469 Rapgef3 ENSMUST00000153464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022469 Rapgef3 ENSMUST00000175894 ENSMUSP00000135194 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022469 Rapgef3 ENSMUST00000135080 ENSMUSP00000117337 TRANSLATION protein_coding stop - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022469 Rapgef3 ENSMUST00000146620 ENSMUSP00000116673 TRANSLATION protein_coding stop - 3 150.0 0.0 2.75 0.0 63.3 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000022469 Rapgef3 ENSMUST00000134885 ENSMUSP00000135317 TRANSLATION protein_coding - - 5 216.0 0.0 3.96 0.0 139.2 0.0 -3,-6 0.0 2 0.0 MINOR ENSMUSG00000022469 Rapgef3 ENSMUST00000153241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022469 Rapgef3 ENSMUST00000177352 ENSMUSP00000135238 TRANSLATION protein_coding - - 5 884.0 16.0 17.368 4.4 338.2 0.0 -4,0 0.6201 11 15.134 ALTERNATIVE:2 ENSMUSG00000022469 Rapgef3 ENSMUST00000129223 ENSMUSP00000118148 TRANSLATION protein_coding - CCDS37187.2 1 918.0 16.0 17.17 0.3 332.6 0.0 -4,-5 0.2194 11 13.604 MINOR ENSMUSG00000022469 Rapgef3 ENSMUST00000134371 ENSMUSP00000122746 TRANSLATION nonsense_mediated_decay start - 5 70.0 2.0 1.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022469 Rapgef3 ENSMUST00000123397 - NO_TRANSLATION retained_intron ENSMUSG00000022469 Rapgef3 ENSMUST00000146214 - NO_TRANSLATION retained_intron ENSMUSG00000022469 Rapgef3 ENSMUST00000125002 - NO_TRANSLATION retained_intron ENSMUSG00000022469 Rapgef3 ENSMUST00000149419 ENSMUSP00000122285 TRANSLATION nonsense_mediated_decay - - 5 85.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000022469 Rapgef3 ENSMUST00000126854 ENSMUSP00000116426 TRANSLATION protein_coding - CCDS49714.1 1 926.0 16.0 17.368 7.0 338.2 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:2 ENSMUSG00000022469 Rapgef3 ENSMUST00000128775 ENSMUSP00000120126 TRANSLATION protein_coding - CCDS49713.1 1 909.0 16.0 16.968 0.0 313.0 0.0 -4,-5 0.1345 11 12.802 MINOR ENSMUSG00000093626 Ly6l ENSMUST00000177479 ENSMUSP00000134982 TRANSLATION protein_coding - CCDS84172.1 5 140.0 0.0 2.0 0.0 30.0 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000018169 Mfng ENSMUST00000136795 - NO_TRANSLATION retained_intron ENSMUSG00000018169 Mfng ENSMUST00000123518 - NO_TRANSLATION retained_intron ENSMUSG00000018169 Mfng ENSMUST00000128389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018169 Mfng ENSMUST00000018313 ENSMUSP00000018313 TRANSLATION protein_coding - CCDS27622.1 1 321.0 10.0 6.55 4.8 369.4 0.0 1,-4 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000022589 Cyp11b2 ENSMUST00000238900 ENSMUSP00000158954 TRANSLATION protein_coding - - - 500.0 29.0 8.75 7.5 381.6 0.0 -4,0 0.8418 - 16.0 ALTERNATIVE:1 ENSMUSG00000022589 Cyp11b2 ENSMUST00000167634 ENSMUSP00000131503 TRANSLATION protein_coding - CCDS27536.2 1 502.0 29.0 8.75 7.5 381.6 0.0 -4,0 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000115987 Vps28 ENSMUST00000229052 - NO_TRANSLATION retained_intron ENSMUSG00000115987 Vps28 ENSMUST00000229261 - NO_TRANSLATION retained_intron ENSMUSG00000115987 Vps28 ENSMUST00000229019 ENSMUSP00000155847 TRANSLATION protein_coding - - - 183.0 0.0 5.25 5.5 226.8 0.0 -4,-5 0.2071 9 10.886 MINOR ENSMUSG00000115987 Vps28 ENSMUST00000229545 - NO_TRANSLATION retained_intron ENSMUSG00000115987 Vps28 ENSMUST00000078803 ENSMUSP00000077856 TRANSLATION protein_coding - CCDS27579.1 1 221.0 0.0 6.08 33.8 226.8 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000060429 Sntb1 ENSMUST00000039769 ENSMUSP00000041294 TRANSLATION protein_coding - CCDS27479.1 1 537.0 0.0 1.0 0.0 106.7 0.0 0,2 1.0 24 12.0 PRINCIPAL:1 ENSMUSG00000060429 Sntb1 ENSMUST00000110200 ENSMUSP00000105829 TRANSLATION protein_coding - - 1 276.0 0.0 0.6 0.0 68.5 0.0 0,2 0.0007 11 7.308 MINOR ENSMUSG00000060429 Sntb1 ENSMUST00000140574 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033170 Card10 ENSMUST00000071115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033170 Card10 ENSMUST00000164826 ENSMUSP00000129513 TRANSLATION protein_coding - CCDS27623.2 1 1070.0 0.0 2.82 0.0 72.9 0.0 -4,-6 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000033170 Card10 ENSMUST00000170584 ENSMUSP00000131003 TRANSLATION protein_coding - - 5 1021.0 0.0 2.82 0.0 72.9 0.0 -4,-5 0.2348 3 8.0 ALTERNATIVE:2 ENSMUSG00000067713 Prkag1 ENSMUST00000229544 - NO_TRANSLATION retained_intron ENSMUSG00000067713 Prkag1 ENSMUST00000230560 ENSMUSP00000155433 TRANSLATION protein_coding stop - - 215.0 32.0 5.83 0.0 65.8 0.0 -4,-6 0.0006 9 -2.0 MINOR ENSMUSG00000067713 Prkag1 ENSMUST00000229853 - NO_TRANSLATION retained_intron ENSMUSG00000067713 Prkag1 ENSMUST00000229346 - NO_TRANSLATION retained_intron ENSMUSG00000067713 Prkag1 ENSMUST00000229297 ENSMUSP00000155591 TRANSLATION protein_coding stop - - 139.0 17.0 4.0 0.0 29.2 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000067713 Prkag1 ENSMUST00000168846 ENSMUSP00000132499 TRANSLATION protein_coding - CCDS49724.1 1 330.0 47.0 8.33 12.3 106.7 0.0 -4,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000052560 Cpne8 ENSMUST00000064391 ENSMUSP00000067774 TRANSLATION protein_coding - CCDS27758.1 1 577.0 11.0 14.75 14.0 398.6 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000052560 Cpne8 ENSMUST00000140171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052560 Cpne8 ENSMUST00000014777 ENSMUSP00000014777 TRANSLATION protein_coding - CCDS27759.1 1 104.0 2.0 1.0 0.0 0.0 0.0 -4,-5 0.0132 3 0.0 MINOR ENSMUSG00000052560 Cpne8 ENSMUST00000088649 ENSMUSP00000086024 TRANSLATION nonsense_mediated_decay - - 1 157.0 3.0 2.8 0.0 38.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000052560 Cpne8 ENSMUST00000154569 - NO_TRANSLATION retained_intron ENSMUSG00000113558 Tmdd1 ENSMUST00000222611 ENSMUSP00000152149 TRANSLATION protein_coding - - - 351.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.6556 - 0.0 PRINCIPAL:1 ENSMUSG00000042564 Fam227a ENSMUST00000230429 - NO_TRANSLATION retained_intron ENSMUSG00000042564 Fam227a ENSMUST00000230475 - NO_TRANSLATION retained_intron ENSMUSG00000042564 Fam227a ENSMUST00000046816 - NO_TRANSLATION retained_intron ENSMUSG00000042564 Fam227a ENSMUST00000230484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042564 Fam227a ENSMUST00000230366 ENSMUSP00000155521 TRANSLATION nonsense_mediated_decay - - - 115.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042564 Fam227a ENSMUST00000229064 ENSMUSP00000155261 TRANSLATION protein_coding - - - 621.0 0.0 0.0 0.0 177.1 0.0 -4,-5 0.2642 - 2.0 ALTERNATIVE:2 ENSMUSG00000042564 Fam227a ENSMUST00000231126 - NO_TRANSLATION retained_intron ENSMUSG00000042564 Fam227a ENSMUST00000187519 ENSMUSP00000139524 TRANSLATION protein_coding - CCDS79389.1 1 625.0 0.0 0.0 0.0 177.1 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000042564 Fam227a ENSMUST00000231122 - NO_TRANSLATION retained_intron ENSMUSG00000042564 Fam227a ENSMUST00000191401 ENSMUSP00000140661 TRANSLATION nonsense_mediated_decay - - 1 115.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022433 Csnk1e ENSMUST00000117786 ENSMUSP00000113341 TRANSLATION protein_coding - CCDS27640.1 1 416.0 23.0 6.91 32.4 95.2 0.0 -4,-6 1.0 6 21.682 PRINCIPAL:1 ENSMUSG00000022433 Csnk1e ENSMUST00000120859 ENSMUSP00000113975 TRANSLATION protein_coding - CCDS27640.1 1 416.0 23.0 6.91 32.4 95.2 0.0 -4,-6 1.0 6 21.682 PRINCIPAL:1 ENSMUSG00000022433 Csnk1e ENSMUST00000136003 - NO_TRANSLATION retained_intron ENSMUSG00000022433 Csnk1e ENSMUST00000145740 - NO_TRANSLATION retained_intron ENSMUSG00000022433 Csnk1e ENSMUST00000122044 ENSMUSP00000113096 TRANSLATION protein_coding - CCDS70646.1 1 368.0 23.0 7.07 10.0 95.2 0.0 -4,-6 0.4242 3 19.148 MINOR ENSMUSG00000022433 Csnk1e ENSMUST00000144790 ENSMUSP00000115637 TRANSLATION protein_coding stop - 2 141.0 21.0 3.91 0.0 67.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022433 Csnk1e ENSMUST00000127155 - NO_TRANSLATION retained_intron ENSMUSG00000022433 Csnk1e ENSMUST00000229510 ENSMUSP00000155186 TRANSLATION protein_coding stop - - 55.0 7.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022433 Csnk1e ENSMUST00000230599 ENSMUSP00000155317 TRANSLATION protein_coding stop - - 188.0 23.0 4.91 0.0 87.8 0.0 -4,-6 0.0031 1 -2.0 MINOR ENSMUSG00000022433 Csnk1e ENSMUST00000156043 ENSMUSP00000116593 TRANSLATION protein_coding stop - 3 60.0 10.0 1.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022433 Csnk1e ENSMUST00000230942 ENSMUSP00000155731 TRANSLATION protein_coding stop - - 112.0 17.0 2.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022433 Csnk1e ENSMUST00000156513 ENSMUSP00000159272 TRANSLATION protein_coding start - 3 327.0 5.0 3.5 0.0 29.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022433 Csnk1e ENSMUST00000135519 ENSMUSP00000122135 TRANSLATION protein_coding stop - 5 118.0 17.0 3.08 0.0 28.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000063296 Tmem117 ENSMUST00000229677 - NO_TRANSLATION retained_intron ENSMUSG00000063296 Tmem117 ENSMUST00000080141 ENSMUSP00000079038 TRANSLATION protein_coding - CCDS27774.1 1 514.0 0.0 0.0 11.1 769.7 0.0 -3,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000022621 Rabl2 ENSMUST00000165747 - NO_TRANSLATION retained_intron ENSMUSG00000022621 Rabl2 ENSMUST00000094056 ENSMUSP00000091598 TRANSLATION protein_coding - - 1 138.0 10.0 1.746 0.0 0.0 0.0 -4,-5 0.0 4 0.564 MINOR ENSMUSG00000022621 Rabl2 ENSMUST00000163376 - NO_TRANSLATION retained_intron ENSMUSG00000022621 Rabl2 ENSMUST00000171826 ENSMUSP00000129221 TRANSLATION protein_coding start/stop - 1 57.0 7.0 1.346 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022621 Rabl2 ENSMUST00000171142 - NO_TRANSLATION retained_intron ENSMUSG00000022621 Rabl2 ENSMUST00000171580 ENSMUSP00000128799 TRANSLATION nonsense_mediated_decay - - 5 64.0 8.0 0.6 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022621 Rabl2 ENSMUST00000169466 ENSMUSP00000129660 TRANSLATION nonsense_mediated_decay - - 5 61.0 8.0 0.6 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022621 Rabl2 ENSMUST00000170126 ENSMUSP00000126182 TRANSLATION nonsense_mediated_decay - - 3 74.0 11.0 1.305 0.0 38.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022621 Rabl2 ENSMUST00000023294 ENSMUSP00000023294 TRANSLATION protein_coding - CCDS49704.1 1 223.0 22.0 4.465 7.2 132.7 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000022621 Rabl2 ENSMUST00000172053 ENSMUSP00000129253 TRANSLATION nonsense_mediated_decay - - 5 103.0 15.0 2.055 0.0 81.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022621 Rabl2 ENSMUST00000172074 - NO_TRANSLATION retained_intron ENSMUSG00000037003 Tns2 ENSMUST00000229035 - NO_TRANSLATION retained_intron ENSMUSG00000037003 Tns2 ENSMUST00000169627 ENSMUSP00000129146 TRANSLATION protein_coding - CCDS37224.1 1 1400.0 18.0 16.08 0.4 289.5 0.0 -4,-1 1.0 34 14.0 PRINCIPAL:2 ENSMUSG00000037003 Tns2 ENSMUST00000229800 - NO_TRANSLATION retained_intron ENSMUSG00000037003 Tns2 ENSMUST00000230474 ENSMUSP00000155309 TRANSLATION protein_coding - - - 1392.0 18.0 16.08 0.0 289.5 0.0 -4,-7 0.4454 34 14.0 ALTERNATIVE:2 ENSMUSG00000037003 Tns2 ENSMUST00000229097 - NO_TRANSLATION retained_intron ENSMUSG00000037003 Tns2 ENSMUST00000228958 ENSMUSP00000155830 TRANSLATION protein_coding stop - - 1400.0 18.0 16.08 0.1 289.5 0.0 -4,-7 0.7725 34 -2.0 MINOR ENSMUSG00000037003 Tns2 ENSMUST00000229908 - NO_TRANSLATION retained_intron ENSMUSG00000037003 Tns2 ENSMUST00000046144 ENSMUSP00000041087 TRANSLATION protein_coding - - 5 1407.0 18.0 16.08 0.1 289.5 0.0 -4,-1 0.4921 33 14.0 ALTERNATIVE:2 ENSMUSG00000037003 Tns2 ENSMUST00000229592 ENSMUSP00000155624 TRANSLATION protein_coding stop - - 168.0 8.0 1.1 0.0 29.1 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000022149 C9 ENSMUST00000128097 ENSMUSP00000135614 TRANSLATION nonsense_mediated_decay start - 5 67.0 0.0 0.0 0.0 0.0 0.0 2,-4 0.0 - -2.0 MINOR ENSMUSG00000022149 C9 ENSMUST00000147905 ENSMUSP00000135459 TRANSLATION protein_coding start - 3 103.0 0.0 1.4 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022149 C9 ENSMUST00000239466 ENSMUSP00000159308 TRANSLATION protein_coding - CCDS27367.1 - 561.0 6.0 7.666 0.4 178.7 0.0 1,-2 0.6645 16 14.0 ALTERNATIVE:2 ENSMUSG00000022149 C9 ENSMUST00000127196 - NO_TRANSLATION retained_intron ENSMUSG00000022149 C9 ENSMUST00000022749 ENSMUSP00000022749 TRANSLATION protein_coding - - 1 548.0 6.0 7.666 0.0 178.7 0.0 4,-1 0.8596 16 14.0 PRINCIPAL:4 ENSMUSG00000023019 Gpd1 ENSMUST00000162194 ENSMUSP00000125164 TRANSLATION protein_coding - - 5 326.0 28.0 7.25 1.0 237.8 0.0 -4,-7 0.0066 24 8.502 MINOR ENSMUSG00000023019 Gpd1 ENSMUST00000023760 ENSMUSP00000023760 TRANSLATION protein_coding - CCDS27828.1 1 349.0 31.0 8.0 30.8 354.8 0.0 -4,-7 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000023019 Gpd1 ENSMUST00000161768 - NO_TRANSLATION retained_intron ENSMUSG00000022613 Miox ENSMUST00000162756 - NO_TRANSLATION retained_intron ENSMUSG00000022613 Miox ENSMUST00000023282 ENSMUSP00000023282 TRANSLATION protein_coding - CCDS27745.1 1 285.0 12.0 6.98 18.8 402.6 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000022613 Miox ENSMUST00000161437 - NO_TRANSLATION retained_intron ENSMUSG00000022613 Miox ENSMUST00000162033 ENSMUSP00000123732 TRANSLATION protein_coding start - 3 64.0 7.0 1.0 0.0 58.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022613 Miox ENSMUST00000159381 - NO_TRANSLATION retained_intron ENSMUSG00000022613 Miox ENSMUST00000160491 - NO_TRANSLATION retained_intron ENSMUSG00000022243 Slc45a2 ENSMUST00000117100 ENSMUSP00000112408 TRANSLATION protein_coding - CCDS27382.1 1 530.0 0.0 1.6 7.3 50.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000068391 Chrac1 ENSMUST00000137698 - NO_TRANSLATION retained_intron ENSMUSG00000068391 Chrac1 ENSMUST00000089765 ENSMUSP00000087197 TRANSLATION protein_coding - CCDS27516.1 1 129.0 0.0 3.0 1.9 47.5 0.0 -4,-6 1.0 3 12.85 PRINCIPAL:1 ENSMUSG00000068391 Chrac1 ENSMUST00000134353 ENSMUSP00000120833 TRANSLATION protein_coding - - 2 94.0 0.0 2.0 0.0 48.7 0.0 -4,-6 0.0016 3 10.002 MINOR ENSMUSG00000022550 Adck5 ENSMUST00000161732 ENSMUSP00000125482 TRANSLATION nonsense_mediated_decay - - 1 129.0 0.0 0.09 0.0 0.0 2.0 -4,0 0.0009 - -2.0 MINOR ENSMUSG00000022550 Adck5 ENSMUST00000160410 - NO_TRANSLATION retained_intron ENSMUSG00000022550 Adck5 ENSMUST00000160784 ENSMUSP00000124666 TRANSLATION protein_coding - - 5 567.0 0.0 7.09 0.0 122.2 2.0 -4,0 0.0977 8 12.0 MINOR ENSMUSG00000022550 Adck5 ENSMUST00000160296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022550 Adck5 ENSMUST00000161612 ENSMUSP00000124701 TRANSLATION nonsense_mediated_decay - - 5 129.0 0.0 0.09 0.0 0.0 2.0 -4,0 0.0009 - -2.0 MINOR ENSMUSG00000022550 Adck5 ENSMUST00000159049 - NO_TRANSLATION retained_intron ENSMUSG00000022550 Adck5 ENSMUST00000229007 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022550 Adck5 ENSMUST00000160094 - NO_TRANSLATION retained_intron ENSMUSG00000022550 Adck5 ENSMUST00000159005 - NO_TRANSLATION retained_intron ENSMUSG00000022550 Adck5 ENSMUST00000161783 - NO_TRANSLATION retained_intron ENSMUSG00000022550 Adck5 ENSMUST00000162254 - NO_TRANSLATION retained_intron ENSMUSG00000022550 Adck5 ENSMUST00000159949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022550 Adck5 ENSMUST00000161311 - NO_TRANSLATION retained_intron ENSMUSG00000022550 Adck5 ENSMUST00000162503 ENSMUSP00000125055 TRANSLATION protein_coding - CCDS27576.2 5 582.0 0.0 7.09 7.7 122.2 2.0 -4,0 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000022550 Adck5 ENSMUST00000162139 - NO_TRANSLATION retained_intron ENSMUSG00000053559 Smagp ENSMUST00000230517 ENSMUSP00000155534 TRANSLATION protein_coding - - - 84.0 0.0 1.38 0.0 0.0 2.0 -4,-7 0.0783 - 6.0 MINOR ENSMUSG00000053559 Smagp ENSMUST00000229965 ENSMUSP00000155300 TRANSLATION protein_coding - - - 46.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0046 - 0.654 MINOR ENSMUSG00000053559 Smagp ENSMUST00000066068 ENSMUSP00000066137 TRANSLATION protein_coding - CCDS27842.1 1 97.0 0.0 1.38 11.9 0.0 2.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000053559 Smagp ENSMUST00000172334 ENSMUSP00000126870 TRANSLATION protein_coding - CCDS27842.1 2 97.0 0.0 1.38 11.9 0.0 2.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000053559 Smagp ENSMUST00000229307 ENSMUSP00000155782 TRANSLATION protein_coding - - - 84.0 0.0 1.38 0.0 0.0 2.0 -4,-7 0.0783 - 6.0 MINOR ENSMUSG00000053559 Smagp ENSMUST00000230280 ENSMUSP00000155450 TRANSLATION protein_coding - - - 46.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0046 - 0.654 MINOR ENSMUSG00000039801 Cplane1 ENSMUST00000130748 - NO_TRANSLATION retained_intron ENSMUSG00000039801 Cplane1 ENSMUST00000154291 - NO_TRANSLATION retained_intron ENSMUSG00000039801 Cplane1 ENSMUST00000128772 - NO_TRANSLATION retained_intron ENSMUSG00000039801 Cplane1 ENSMUST00000228039 ENSMUSP00000154760 TRANSLATION protein_coding start/stop - - 31.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0307 - -2.0 MINOR ENSMUSG00000039801 Cplane1 ENSMUST00000150869 - NO_TRANSLATION retained_intron ENSMUSG00000039801 Cplane1 ENSMUST00000110617 ENSMUSP00000106247 TRANSLATION protein_coding - CCDS49578.1 5 3214.0 0.0 0.0 0.0 437.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000063522 Ly6m ENSMUST00000077004 ENSMUSP00000076264 TRANSLATION protein_coding - CCDS27537.1 1 111.0 0.0 0.0 0.4 61.9 0.0 4,-1 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000063522 Ly6m ENSMUST00000190826 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047591 Mafa ENSMUST00000062002 ENSMUSP00000054226 TRANSLATION protein_coding - CCDS27549.1 - 359.0 0.0 0.5 1.8 185.0 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000043460 Elfn2 ENSMUST00000230478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043460 Elfn2 ENSMUST00000229441 ENSMUSP00000155111 TRANSLATION protein_coding - CCDS27621.1 - 823.0 0.0 0.0 6.7 49.6 1.0 3,-1 1.0 13 8.0 PRINCIPAL:1 ENSMUSG00000043460 Elfn2 ENSMUST00000229550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043460 Elfn2 ENSMUST00000088592 ENSMUSP00000085960 TRANSLATION protein_coding - CCDS27621.1 1 823.0 0.0 0.0 6.7 49.6 1.0 3,-1 1.0 13 8.0 PRINCIPAL:1 ENSMUSG00000022564 Grina ENSMUST00000229916 - NO_TRANSLATION retained_intron ENSMUSG00000022564 Grina ENSMUST00000229772 ENSMUSP00000154982 TRANSLATION protein_coding stop - - 79.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000022564 Grina ENSMUST00000230347 ENSMUSP00000155539 TRANSLATION protein_coding stop - - 121.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022564 Grina ENSMUST00000023225 ENSMUSP00000023225 TRANSLATION protein_coding - CCDS27563.1 1 345.0 0.0 4.3 0.4 121.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022564 Grina ENSMUST00000229380 ENSMUSP00000155771 TRANSLATION protein_coding stop - - 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022488 Nckap1l ENSMUST00000229127 ENSMUSP00000154960 TRANSLATION nonsense_mediated_decay - - - 298.0 0.0 6.198 0.0 412.2 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000022488 Nckap1l ENSMUST00000230276 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022488 Nckap1l ENSMUST00000229468 - NO_TRANSLATION retained_intron ENSMUSG00000022488 Nckap1l ENSMUST00000047405 ENSMUSP00000035400 TRANSLATION protein_coding - CCDS37236.1 1 1134.0 0.0 24.658 12.6 1594.1 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000022488 Nckap1l ENSMUST00000229835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055745 Rtl6 ENSMUST00000069476 ENSMUSP00000069947 TRANSLATION protein_coding - CCDS37168.1 - 243.0 0.0 0.2 9.4 76.9 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000022357 Klhl38 ENSMUST00000022985 ENSMUSP00000022985 TRANSLATION protein_coding - CCDS27492.1 1 581.0 0.0 1.6 16.0 258.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000023055 Calcoco1 ENSMUST00000166943 - NO_TRANSLATION retained_intron ENSMUSG00000023055 Calcoco1 ENSMUST00000230374 - NO_TRANSLATION retained_intron ENSMUSG00000023055 Calcoco1 ENSMUST00000168112 ENSMUSP00000128307 TRANSLATION protein_coding start - 5 232.0 3.0 0.0 0.0 115.8 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000023055 Calcoco1 ENSMUST00000230702 - NO_TRANSLATION retained_intron ENSMUSG00000023055 Calcoco1 ENSMUST00000171838 ENSMUSP00000130170 TRANSLATION protein_coding - - 1 633.0 0.0 2.76 0.3 792.1 0.0 -4,-7 0.1966 19 12.0 MINOR ENSMUSG00000023055 Calcoco1 ENSMUST00000229231 ENSMUSP00000155767 TRANSLATION protein_coding - - - 606.0 3.0 1.6 1.0 335.3 0.0 -4,-7 0.0166 17 6.48 MINOR ENSMUSG00000023055 Calcoco1 ENSMUST00000023818 ENSMUSP00000023818 TRANSLATION protein_coding - CCDS27889.1 1 691.0 3.0 2.76 11.0 792.1 0.0 -4,-7 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000023055 Calcoco1 ENSMUST00000230035 ENSMUSP00000155446 TRANSLATION protein_coding stop - - 533.0 0.0 2.43 0.0 687.3 0.0 -4,-7 0.0331 18 -2.0 MINOR ENSMUSG00000023055 Calcoco1 ENSMUST00000229398 ENSMUSP00000155415 TRANSLATION nonsense_mediated_decay - - - 68.0 0.0 0.8 0.0 65.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000068522 Aard ENSMUST00000090025 ENSMUSP00000087479 TRANSLATION protein_coding - CCDS49603.1 1 167.0 0.0 1.8 0.4 0.0 0.0 -4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000022474 Pmm1 ENSMUST00000229120 ENSMUSP00000155029 TRANSLATION nonsense_mediated_decay start - - 228.0 14.0 5.255 0.0 195.9 0.0 -4,-1 0.0004 5 -2.0 MINOR ENSMUSG00000022474 Pmm1 ENSMUST00000147442 - NO_TRANSLATION retained_intron ENSMUSG00000022474 Pmm1 ENSMUST00000230229 ENSMUSP00000155419 TRANSLATION protein_coding - - - 165.0 14.0 4.58 0.0 196.4 0.0 -4,-6 0.0 5 0.0 MINOR ENSMUSG00000022474 Pmm1 ENSMUST00000125593 - NO_TRANSLATION retained_intron ENSMUSG00000022474 Pmm1 ENSMUST00000129406 - NO_TRANSLATION retained_intron ENSMUSG00000022474 Pmm1 ENSMUST00000023112 ENSMUSP00000023112 TRANSLATION protein_coding - CCDS27678.1 1 262.0 30.0 7.58 11.8 372.4 0.0 -4,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000022474 Pmm1 ENSMUST00000229385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022474 Pmm1 ENSMUST00000071462 ENSMUSP00000071405 TRANSLATION protein_coding - CCDS70650.1 1 202.0 27.0 5.75 0.0 282.9 0.0 -4,-6 0.0054 5 6.972 MINOR ENSMUSG00000022474 Pmm1 ENSMUST00000147645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022474 Pmm1 ENSMUST00000229957 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022474 Pmm1 ENSMUST00000155781 ENSMUSP00000115551 TRANSLATION nonsense_mediated_decay - - 3 98.0 6.0 1.755 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000059213 Ddn ENSMUST00000075444 ENSMUSP00000074895 TRANSLATION protein_coding - CCDS49723.1 1 710.0 0.0 0.5 2.7 1227.9 0.0 -4,-5 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000059213 Ddn ENSMUST00000230409 ENSMUSP00000155382 TRANSLATION protein_coding stop - - 102.0 0.0 0.5 0.0 199.6 0.0 -4,-7 0.0275 - -2.0 MINOR ENSMUSG00000022404 Slc25a17 ENSMUST00000231078 - NO_TRANSLATION retained_intron ENSMUSG00000022404 Slc25a17 ENSMUST00000023040 ENSMUSP00000023040 TRANSLATION protein_coding - CCDS27666.1 1 307.0 0.0 4.835 19.5 187.1 5.0 -3,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000022404 Slc25a17 ENSMUST00000230983 ENSMUSP00000154824 TRANSLATION nonsense_mediated_decay start - - 26.0 0.0 0.33 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022404 Slc25a17 ENSMUST00000229564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022404 Slc25a17 ENSMUST00000230309 ENSMUSP00000155849 TRANSLATION nonsense_mediated_decay start - - 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022404 Slc25a17 ENSMUST00000231140 ENSMUSP00000155823 TRANSLATION nonsense_mediated_decay - - - 186.0 0.0 2.76 0.0 89.4 3.0 -3,-6 0.0 2 -2.0 MINOR ENSMUSG00000022404 Slc25a17 ENSMUST00000229617 - NO_TRANSLATION retained_intron ENSMUSG00000103906 Tigd5 ENSMUST00000192937 ENSMUSP00000141473 TRANSLATION protein_coding - CCDS79379.1 - 642.0 0.0 0.0 0.1 144.4 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000022475 Hdac7 ENSMUST00000120683 ENSMUSP00000112446 TRANSLATION protein_coding - CCDS57003.1 1 868.0 9.0 9.015 0.0 140.2 0.0 -4,-2 0.0364 6 7.002 MINOR ENSMUSG00000022475 Hdac7 ENSMUST00000088402 ENSMUSP00000085744 TRANSLATION protein_coding - CCDS37188.1 1 938.0 12.0 10.515 0.0 261.8 0.0 -4,-5 0.2765 6 14.0 ALTERNATIVE:2 ENSMUSG00000022475 Hdac7 ENSMUST00000116409 ENSMUSP00000112110 TRANSLATION protein_coding - CCDS57006.1 1 953.0 12.0 10.515 0.0 261.8 0.0 -4,-2 0.3737 6 14.0 ALTERNATIVE:2 ENSMUSG00000022475 Hdac7 ENSMUST00000118294 ENSMUSP00000113380 TRANSLATION protein_coding - CCDS57005.1 1 946.0 12.0 10.515 2.5 261.8 0.0 -4,-2 1.0 6 15.0 PRINCIPAL:2 ENSMUSG00000022475 Hdac7 ENSMUST00000228466 - NO_TRANSLATION retained_intron ENSMUSG00000022475 Hdac7 ENSMUST00000156045 ENSMUSP00000120576 TRANSLATION nonsense_mediated_decay - - 1 636.0 4.0 2.665 0.0 0.0 0.0 -4,-5 0.0003 3 -2.0 MINOR ENSMUSG00000022475 Hdac7 ENSMUST00000151334 - NO_TRANSLATION retained_intron ENSMUSG00000022475 Hdac7 ENSMUST00000119670 ENSMUSP00000112459 TRANSLATION protein_coding - CCDS57001.1 1 892.0 12.0 10.515 0.0 261.8 0.0 -4,-2 0.2426 5 14.0 ALTERNATIVE:2 ENSMUSG00000022475 Hdac7 ENSMUST00000079838 ENSMUSP00000078766 TRANSLATION protein_coding - CCDS57007.1 1 944.0 12.0 10.515 0.0 261.8 0.0 -4,-5 0.4332 5 14.0 ALTERNATIVE:2 ENSMUSG00000022475 Hdac7 ENSMUST00000134258 ENSMUSP00000118599 TRANSLATION protein_coding start/stop - 3 257.0 4.0 2.665 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000022475 Hdac7 ENSMUST00000135651 ENSMUSP00000119970 TRANSLATION protein_coding start/stop - 3 213.0 7.0 3.495 0.0 39.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022475 Hdac7 ENSMUST00000116408 ENSMUSP00000112109 TRANSLATION protein_coding - CCDS57004.1 1 916.0 12.0 10.515 0.4 261.8 0.0 -4,-2 0.3968 6 14.0 ALTERNATIVE:2 ENSMUSG00000022475 Hdac7 ENSMUST00000121514 ENSMUSP00000112641 TRANSLATION protein_coding - CCDS57002.1 1 851.0 12.0 10.515 0.0 261.8 0.0 -4,-2 0.2303 6 14.0 ALTERNATIVE:2 ENSMUSG00000037119 Fam91a1 ENSMUST00000228576 - NO_TRANSLATION retained_intron ENSMUSG00000037119 Fam91a1 ENSMUST00000227796 - NO_TRANSLATION retained_intron ENSMUSG00000037119 Fam91a1 ENSMUST00000037270 ENSMUSP00000036524 TRANSLATION protein_coding - CCDS37080.1 1 837.0 0.0 1.8 11.5 1078.1 0.0 -4,-5 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000037119 Fam91a1 ENSMUST00000227770 - NO_TRANSLATION retained_intron ENSMUSG00000039065 Atpsckmt ENSMUST00000042702 ENSMUSP00000039094 TRANSLATION protein_coding - CCDS27412.1 1 247.0 17.0 2.47 0.0 0.0 0.0 -4,-7 0.9063 4 12.0 PRINCIPAL:2 ENSMUSG00000039065 Atpsckmt ENSMUST00000161061 ENSMUSP00000124619 TRANSLATION protein_coding - - 1 169.0 17.0 2.15 0.0 0.0 0.0 -4,-7 0.0273 2 11.22 ALTERNATIVE:2 ENSMUSG00000039065 Atpsckmt ENSMUST00000160146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022304 Dpys ENSMUST00000155859 ENSMUSP00000114708 TRANSLATION protein_coding start - 5 47.0 0.0 1.33 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000022304 Dpys ENSMUST00000150196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022304 Dpys ENSMUST00000022915 ENSMUSP00000022915 TRANSLATION protein_coding - CCDS27445.1 1 519.0 6.0 9.33 8.4 130.2 0.0 -4,-7 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000022304 Dpys ENSMUST00000110306 ENSMUSP00000105935 TRANSLATION protein_coding - CCDS27445.1 1 519.0 6.0 9.33 8.4 130.2 0.0 -4,-7 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000022388 Ttll8 ENSMUST00000177254 ENSMUSP00000134858 TRANSLATION nonsense_mediated_decay start - 1 189.0 0.0 1.4 0.0 0.0 0.0 -4,-1 0.0616 - -2.0 MINOR ENSMUSG00000022388 Ttll8 ENSMUST00000109371 ENSMUSP00000104996 TRANSLATION protein_coding - CCDS27735.2 1 832.0 3.0 1.26 0.0 241.5 0.0 -4,-2 1.0 - 14.4 PRINCIPAL:1 ENSMUSG00000022388 Ttll8 ENSMUST00000177180 ENSMUSP00000135381 TRANSLATION nonsense_mediated_decay - - 1 194.0 0.0 1.4 0.0 0.0 0.0 -4,-2 0.0671 - -2.0 MINOR ENSMUSG00000022388 Ttll8 ENSMUST00000137740 - NO_TRANSLATION retained_intron ENSMUSG00000037085 Trmt12 ENSMUST00000036937 ENSMUSP00000047831 TRANSLATION protein_coding - CCDS37081.1 - 446.0 14.0 0.16 0.0 0.0 0.0 -4,-5 0.9613 3 12.0 PRINCIPAL:1 ENSMUSG00000099083 Atf7 ENSMUST00000169033 ENSMUSP00000130130 TRANSLATION protein_coding - - 1 413.0 3.0 3.5 0.0 47.0 0.0 -4,-5 0.0194 5 15.0 MINOR ENSMUSG00000099083 Atf7 ENSMUST00000183786 - NO_TRANSLATION retained_intron ENSMUSG00000099083 Atf7 ENSMUST00000108828 ENSMUSP00000104456 TRANSLATION protein_coding - - 1 413.0 3.0 3.5 0.0 47.0 0.0 -4,-5 0.0194 5 15.0 MINOR ENSMUSG00000099083 Atf7 ENSMUST00000096143 ENSMUSP00000093857 TRANSLATION protein_coding - - - 129.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - 0.0 MINOR ENSMUSG00000099083 Atf7 ENSMUST00000184485 ENSMUSP00000139308 TRANSLATION protein_coding - CCDS84198.1 1 483.0 3.0 3.5 18.5 47.0 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000099083 Atf7 ENSMUST00000183765 ENSMUSP00000139054 TRANSLATION protein_coding stop - 5 202.0 3.0 1.5 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000099083 Atf7 ENSMUST00000183452 ENSMUSP00000139367 TRANSLATION nonsense_mediated_decay - - 5 54.0 3.0 1.5 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000099083 Atf7 ENSMUST00000185070 ENSMUSP00000139379 TRANSLATION protein_coding stop - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000099083 Atf7 ENSMUST00000184077 ENSMUSP00000139217 TRANSLATION protein_coding stop - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000099083 Atf7 ENSMUST00000184906 ENSMUSP00000139243 TRANSLATION protein_coding - CCDS84197.1 1 424.0 3.0 3.5 0.0 47.0 0.0 -4,-5 0.1111 5 15.0 MINOR ENSMUSG00000099083 Atf7 ENSMUST00000184918 - NO_TRANSLATION retained_intron ENSMUSG00000099083 Atf7 ENSMUST00000183727 - NO_TRANSLATION retained_intron ENSMUSG00000099083 Atf7 ENSMUST00000184616 ENSMUSP00000139181 TRANSLATION protein_coding - CCDS84198.1 1 483.0 3.0 3.5 18.5 47.0 0.0 -4,-5 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000022479 Vdr ENSMUST00000173611 ENSMUSP00000133351 TRANSLATION protein_coding stop - 5 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022479 Vdr ENSMUST00000174633 ENSMUSP00000133682 TRANSLATION protein_coding stop - 2 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022479 Vdr ENSMUST00000173104 ENSMUSP00000134584 TRANSLATION protein_coding stop - 2 51.0 4.0 0.75 0.0 49.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022479 Vdr ENSMUST00000126568 ENSMUSP00000116842 TRANSLATION protein_coding stop - 3 75.0 6.0 1.5 0.0 75.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022479 Vdr ENSMUST00000023119 ENSMUSP00000023119 TRANSLATION protein_coding - CCDS27784.1 1 422.0 8.0 7.4 15.7 179.7 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000022479 Vdr ENSMUST00000139656 - NO_TRANSLATION retained_intron ENSMUSG00000022351 Sqle ENSMUST00000100640 ENSMUSP00000098205 TRANSLATION protein_coding - - 1 540.0 29.0 8.75 1.1 204.7 3.0 -2,-5 0.0227 6 9.364 MINOR ENSMUSG00000022351 Sqle ENSMUST00000022977 ENSMUSP00000022977 TRANSLATION protein_coding - CCDS27497.1 1 572.0 30.0 9.75 15.5 369.0 3.0 -2,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000022351 Sqle ENSMUST00000162142 - NO_TRANSLATION retained_intron ENSMUSG00000022351 Sqle ENSMUST00000161953 - NO_TRANSLATION retained_intron ENSMUSG00000116358 Gm49450 ENSMUST00000134214 ENSMUSP00000155021 TRANSLATION protein_coding,RT stop - 5 267.0 20.0 3.0 0.0 234.2 0.0 -4,-5 0.7798 - -2.0 PRINCIPAL:1 ENSMUSG00000009035 Tmem184b ENSMUST00000231076 ENSMUSP00000155585 TRANSLATION protein_coding stop - - 222.0 0.0 0.0 0.0 183.9 5.0 -4,-6 0.0029 2 -2.0 MINOR ENSMUSG00000009035 Tmem184b ENSMUST00000074991 ENSMUSP00000074518 TRANSLATION protein_coding - CCDS27639.1 1 407.0 0.0 0.0 16.1 313.1 8.0 -4,-7 1.0 1 6.0 ALTERNATIVE:1 ENSMUSG00000009035 Tmem184b ENSMUST00000229003 - NO_TRANSLATION retained_intron ENSMUSG00000009035 Tmem184b ENSMUST00000229049 ENSMUSP00000155214 TRANSLATION protein_coding stop - - 44.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000009035 Tmem184b ENSMUST00000226929 - NO_TRANSLATION retained_intron ENSMUSG00000009035 Tmem184b ENSMUST00000228002 ENSMUSP00000154210 TRANSLATION protein_coding - - - 414.0 0.0 0.0 16.1 313.1 8.0 -4,-7 0.8409 2 6.0 PRINCIPAL:3 ENSMUSG00000009035 Tmem184b ENSMUST00000178522 ENSMUSP00000136416 TRANSLATION protein_coding - CCDS27639.1 1 407.0 0.0 0.0 16.1 313.1 8.0 -4,-7 1.0 1 6.0 ALTERNATIVE:1 ENSMUSG00000009035 Tmem184b ENSMUST00000228472 ENSMUSP00000154053 TRANSLATION protein_coding stop - - 120.0 0.0 0.0 0.0 89.6 3.0 -4,-7 0.0003 - -2.0 MINOR ENSMUSG00000003882 Il7r ENSMUST00000228673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003882 Il7r ENSMUST00000228782 ENSMUSP00000154530 TRANSLATION protein_coding - - - 286.0 0.0 4.0 0.0 28.2 1.0 3,-2 0.103 1 12.0 MINOR ENSMUSG00000003882 Il7r ENSMUST00000003981 ENSMUSP00000003981 TRANSLATION protein_coding - CCDS27376.1 1 459.0 0.0 4.0 8.3 28.2 1.0 3,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000003882 Il7r ENSMUST00000227234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000116378 Gcat ENSMUST00000171999 ENSMUSP00000131649 TRANSLATION protein_coding,RT - CCDS49666.1 1 382.0 15.0 8.0 0.0 212.8 0.0 -4,0 0.9234 - -2.0 PRINCIPAL:1 ENSMUSG00000046034 Otulin ENSMUST00000059662 ENSMUSP00000057893 TRANSLATION protein_coding - CCDS49586.1 1 352.0 0.0 5.08 10.0 416.5 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000046034 Otulin ENSMUST00000228179 ENSMUSP00000154705 TRANSLATION protein_coding start - - 154.0 0.0 1.0 0.0 130.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000046034 Otulin ENSMUST00000228439 ENSMUSP00000154117 TRANSLATION nonsense_mediated_decay - - - 58.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000022634 Yaf2 ENSMUST00000080299 ENSMUSP00000079179 TRANSLATION protein_coding - CCDS27765.1 1 179.0 4.0 1.6 28.2 102.7 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000022634 Yaf2 ENSMUST00000133736 ENSMUSP00000155669 TRANSLATION nonsense_mediated_decay - - 1 68.0 4.0 1.0 0.0 35.8 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000078907 Fam186b ENSMUST00000230608 ENSMUSP00000155427 TRANSLATION protein_coding stop - - 77.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0178 - -2.0 MINOR ENSMUSG00000078907 Fam186b ENSMUST00000109100 ENSMUSP00000104728 TRANSLATION protein_coding - CCDS37200.1 5 943.0 0.0 0.6 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000036529 Sbf1 ENSMUST00000176028 - NO_TRANSLATION retained_intron ENSMUSG00000036529 Sbf1 ENSMUST00000175778 ENSMUSP00000135351 TRANSLATION protein_coding start - 5 415.0 8.0 4.482 0.0 165.4 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000036529 Sbf1 ENSMUST00000146637 ENSMUSP00000122386 TRANSLATION protein_coding start/stop - 5 257.0 0.0 1.582 0.0 162.0 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000036529 Sbf1 ENSMUST00000155146 - NO_TRANSLATION retained_intron ENSMUSG00000036529 Sbf1 ENSMUST00000124576 ENSMUSP00000115740 TRANSLATION nonsense_mediated_decay - - 1 403.0 0.0 1.43 0.0 243.1 0.0 -4,-7 0.0 11 -2.0 MINOR ENSMUSG00000036529 Sbf1 ENSMUST00000124398 - NO_TRANSLATION retained_intron ENSMUSG00000036529 Sbf1 ENSMUST00000147020 - NO_TRANSLATION retained_intron ENSMUSG00000036529 Sbf1 ENSMUST00000177388 - NO_TRANSLATION retained_intron ENSMUSG00000036529 Sbf1 ENSMUST00000144585 ENSMUSP00000118107 TRANSLATION protein_coding - CCDS49699.1 1 1893.0 8.0 8.092 6.9 999.7 0.0 -4,-7 1.0 47 16.0 PRINCIPAL:3 ENSMUSG00000036529 Sbf1 ENSMUST00000150539 - NO_TRANSLATION retained_intron ENSMUSG00000036529 Sbf1 ENSMUST00000123791 ENSMUSP00000120725 TRANSLATION protein_coding - CCDS37175.2 1 1867.0 8.0 7.842 5.7 1001.2 0.0 -4,-7 0.9252 46 15.096 ALTERNATIVE:1 ENSMUSG00000036529 Sbf1 ENSMUST00000176277 - NO_TRANSLATION retained_intron ENSMUSG00000036529 Sbf1 ENSMUST00000124642 ENSMUSP00000119943 TRANSLATION nonsense_mediated_decay start - 3 176.0 0.0 0.0 0.0 112.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000063971 Krt88 ENSMUST00000023781 ENSMUSP00000023781 TRANSLATION protein_coding - CCDS37217.1 1 171.0 0.0 2.13 0.1 79.6 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000023020 Cox14 ENSMUST00000238530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023020 Cox14 ENSMUST00000023761 ENSMUSP00000023761 TRANSLATION protein_coding - CCDS37205.1 1 57.0 0.0 1.0 17.2 44.7 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036273 Lrrk2 ENSMUST00000172797 - NO_TRANSLATION retained_intron ENSMUSG00000036273 Lrrk2 ENSMUST00000137657 - NO_TRANSLATION retained_intron ENSMUSG00000036273 Lrrk2 ENSMUST00000133743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036273 Lrrk2 ENSMUST00000060642 ENSMUSP00000052584 TRANSLATION protein_coding - CCDS37180.1 1 2527.0 12.0 21.0025 8.8 324.9 0.0 -4,-5 1.0 36 21.0 PRINCIPAL:1 ENSMUSG00000036273 Lrrk2 ENSMUST00000140734 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036273 Lrrk2 ENSMUST00000156900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022403 St13 ENSMUST00000163382 ENSMUSP00000131502 TRANSLATION protein_coding stop - 5 79.0 0.0 1.4 0.0 0.0 0.0 -4,-6 0.0024 2 -2.0 MINOR ENSMUSG00000022403 St13 ENSMUST00000230906 - NO_TRANSLATION retained_intron ENSMUSG00000022403 St13 ENSMUST00000165582 ENSMUSP00000129966 TRANSLATION protein_coding stop - 5 129.0 0.0 2.88 0.0 0.0 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000022403 St13 ENSMUST00000169204 ENSMUSP00000130525 TRANSLATION protein_coding stop - 1 17.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0128 - -2.0 MINOR ENSMUSG00000022403 St13 ENSMUST00000172107 ENSMUSP00000130195 TRANSLATION protein_coding - CCDS27667.1 1 371.0 0.0 8.3 14.0 0.0 0.0 -4,-6 1.0 9 10.0 PRINCIPAL:1 ENSMUSG00000022403 St13 ENSMUST00000229847 - NO_TRANSLATION retained_intron ENSMUSG00000022403 St13 ENSMUST00000023039 ENSMUSP00000023039 TRANSLATION protein_coding - - 5 362.0 0.0 8.3 1.0 0.0 0.0 -4,-6 0.2245 9 6.0 MINOR ENSMUSG00000043556 Fbxl7 ENSMUST00000059204 ENSMUSP00000061305 TRANSLATION protein_coding - CCDS37052.1 1 491.0 0.0 2.0 27.5 119.0 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000043556 Fbxl7 ENSMUST00000226377 - NO_TRANSLATION retained_intron ENSMUSG00000022389 Tef ENSMUST00000168632 - NO_TRANSLATION retained_intron ENSMUSG00000022389 Tef ENSMUST00000164673 - NO_TRANSLATION retained_intron ENSMUSG00000022389 Tef ENSMUST00000172208 ENSMUSP00000129748 TRANSLATION protein_coding stop - 2 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022389 Tef ENSMUST00000170027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022389 Tef ENSMUST00000023024 ENSMUSP00000023024 TRANSLATION protein_coding - CCDS27672.1 1 301.0 0.0 2.0 9.6 57.6 0.0 -4,-5 0.9446 2 10.457 PRINCIPAL:3 ENSMUSG00000022389 Tef ENSMUST00000168200 ENSMUSP00000132026 TRANSLATION protein_coding stop - 5 106.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022389 Tef ENSMUST00000109553 ENSMUSP00000105180 TRANSLATION protein_coding - CCDS27671.2 1 285.0 0.0 2.0 11.5 57.6 0.0 -4,-5 1.0 - 11.0 ALTERNATIVE:1 ENSMUSG00000022389 Tef ENSMUST00000169952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022389 Tef ENSMUST00000166302 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022389 Tef ENSMUST00000167138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022986 Krt75 ENSMUST00000042957 ENSMUSP00000036246 TRANSLATION protein_coding - CCDS27856.1 1 551.0 0.0 4.75 6.9 496.1 0.0 -4,0 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000096607 7530416G11Rik ENSMUST00000178942 ENSMUSP00000136090 TRANSLATION protein_coding - CCDS56996.1 1 159.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.8408 - 0.0 PRINCIPAL:1 ENSMUSG00000005268 Prlr ENSMUST00000148257 ENSMUSP00000118355 TRANSLATION protein_coding - CCDS56975.1 5 303.0 0.0 6.08 0.0 91.4 3.0 4,-1 0.6383 1 8.0 ALTERNATIVE:2 ENSMUSG00000005268 Prlr ENSMUST00000134410 ENSMUSP00000120417 TRANSLATION protein_coding stop - 3 155.0 0.0 3.33 0.0 91.4 1.0 4,-1 0.0798 1 -2.0 MINOR ENSMUSG00000005268 Prlr ENSMUST00000132361 - NO_TRANSLATION retained_intron ENSMUSG00000005268 Prlr ENSMUST00000127467 ENSMUSP00000116211 TRANSLATION protein_coding stop - 2 185.0 0.0 3.5 0.0 91.4 1.0 -4,-7 0.0121 1 -2.0 MINOR ENSMUSG00000005268 Prlr ENSMUST00000128921 ENSMUSP00000121280 TRANSLATION protein_coding - CCDS56976.1 1 310.0 0.0 6.08 0.1 91.4 3.0 4,-1 0.5955 1 8.0 ALTERNATIVE:2 ENSMUSG00000005268 Prlr ENSMUST00000124470 ENSMUSP00000122219 TRANSLATION protein_coding - CCDS27377.1 1 608.0 0.0 6.08 0.1 91.4 3.0 4,-1 0.6935 3 8.0 PRINCIPAL:3 ENSMUSG00000005268 Prlr ENSMUST00000137867 ENSMUSP00000121935 TRANSLATION nonsense_mediated_decay - - 2 292.0 0.0 6.08 0.0 91.4 3.0 4,-1 0.8309 1 -2.0 MINOR ENSMUSG00000005268 Prlr ENSMUST00000005400 - NO_TRANSLATION retained_intron ENSMUSG00000005268 Prlr ENSMUST00000145428 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005268 Prlr ENSMUST00000138135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005268 Prlr ENSMUST00000128450 ENSMUSP00000122209 TRANSLATION protein_coding - - 1 292.0 0.0 6.08 0.0 91.4 3.0 4,-1 0.8309 1 8.0 ALTERNATIVE:2 ENSMUSG00000005268 Prlr ENSMUST00000130720 ENSMUSP00000117084 TRANSLATION protein_coding stop - 3 119.0 0.0 2.25 0.0 91.4 1.0 4,-1 0.0805 1 -2.0 MINOR ENSMUSG00000039385 Cdh6 ENSMUST00000226917 - NO_TRANSLATION retained_intron ENSMUSG00000039385 Cdh6 ENSMUST00000036439 ENSMUSP00000037113 TRANSLATION protein_coding - CCDS27393.1 5 790.0 48.0 10.08 22.7 442.1 0.0 0,-4 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000044216 Kcnj4 ENSMUST00000057801 ENSMUSP00000094075 TRANSLATION protein_coding - CCDS27641.1 1 445.0 0.0 0.8 11.0 508.9 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000023009 Nckap5l ENSMUST00000161004 ENSMUSP00000125080 TRANSLATION protein_coding start/stop - 3 112.0 0.0 0.0 0.0 70.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000023009 Nckap5l ENSMUST00000160500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023009 Nckap5l ENSMUST00000161948 ENSMUSP00000123858 TRANSLATION protein_coding stop - 3 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023009 Nckap5l ENSMUST00000023747 ENSMUSP00000023747 TRANSLATION protein_coding - CCDS27820.1 1 1323.0 0.0 0.0 1.1 288.0 0.0 -4,-5 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000071714 Csf2rb2 ENSMUST00000230932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071714 Csf2rb2 ENSMUST00000096356 ENSMUSP00000094083 TRANSLATION protein_coding - CCDS27611.1 1 878.0 0.0 9.55 0.0 53.0 1.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000071714 Csf2rb2 ENSMUST00000230115 ENSMUSP00000155013 TRANSLATION protein_coding - - - 769.0 0.0 7.55 0.0 53.0 1.0 4,-1 0.1189 1 7.998 MINOR ENSMUSG00000071714 Csf2rb2 ENSMUST00000230753 ENSMUSP00000155336 TRANSLATION nonsense_mediated_decay start - - 23.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022622 Acr ENSMUST00000230978 ENSMUSP00000155369 TRANSLATION protein_coding start - - 224.0 3.0 3.535 0.0 157.2 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000022622 Acr ENSMUST00000230538 ENSMUSP00000155444 TRANSLATION protein_coding start/stop - - 194.0 6.0 2.75 0.0 164.2 0.0 0,-3 0.0007 2 -2.0 MINOR ENSMUSG00000022622 Acr ENSMUST00000023295 ENSMUSP00000023295 TRANSLATION protein_coding - CCDS27755.1 1 436.0 6.0 4.78 0.4 249.1 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000022622 Acr ENSMUST00000231216 ENSMUSP00000154827 TRANSLATION nonsense_mediated_decay start - - 38.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0017 - -2.0 MINOR ENSMUSG00000042895 Abra ENSMUST00000054742 ENSMUSP00000051973 TRANSLATION protein_coding - CCDS27449.1 1 375.0 0.0 1.0 7.1 112.5 0.0 -4,-6 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000062906 Hdac10 ENSMUST00000109347 ENSMUSP00000104971 TRANSLATION protein_coding - - 5 470.0 2.0 9.44 0.0 202.3 0.0 -4,-5 0.0006 3 3.759 MINOR ENSMUSG00000062906 Hdac10 ENSMUST00000082197 ENSMUSP00000080832 TRANSLATION protein_coding - CCDS27739.1 1 666.0 3.0 12.49 3.4 273.0 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000062906 Hdac10 ENSMUST00000143465 - NO_TRANSLATION retained_intron ENSMUSG00000062906 Hdac10 ENSMUST00000129398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062906 Hdac10 ENSMUST00000134111 - NO_TRANSLATION retained_intron ENSMUSG00000062906 Hdac10 ENSMUST00000128908 - NO_TRANSLATION retained_intron ENSMUSG00000062906 Hdac10 ENSMUST00000138245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062906 Hdac10 ENSMUST00000153195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051920 Rspo2 ENSMUST00000063492 ENSMUSP00000067325 TRANSLATION protein_coding - CCDS27451.1 1 243.0 0.0 3.0 32.5 161.3 0.0 0,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000051920 Rspo2 ENSMUST00000226402 - NO_TRANSLATION retained_intron ENSMUSG00000051920 Rspo2 ENSMUST00000226810 ENSMUSP00000154600 TRANSLATION protein_coding - CCDS27451.1 - 243.0 0.0 3.0 32.5 161.3 0.0 0,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000061731 Ext1 ENSMUST00000133362 ENSMUSP00000117921 TRANSLATION nonsense_mediated_decay - - 5 44.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0019 - -2.0 MINOR ENSMUSG00000061731 Ext1 ENSMUST00000140798 - NO_TRANSLATION retained_intron ENSMUSG00000061731 Ext1 ENSMUST00000077273 ENSMUSP00000076505 TRANSLATION protein_coding - CCDS27466.1 1 746.0 3.0 2.184 24.8 563.3 0.0 -2,-7 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000061731 Ext1 ENSMUST00000110244 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042632 Pla2g6 ENSMUST00000173601 - NO_TRANSLATION retained_intron ENSMUSG00000042632 Pla2g6 ENSMUST00000174021 ENSMUSP00000134672 TRANSLATION protein_coding - CCDS56991.1 1 807.0 0.0 11.198 8.2 151.6 0.0 -4,-2 0.8153 15 9.666 ALTERNATIVE:1 ENSMUSG00000042632 Pla2g6 ENSMUST00000172936 ENSMUSP00000133578 TRANSLATION protein_coding stop - 3 33.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000042632 Pla2g6 ENSMUST00000047816 ENSMUSP00000044234 TRANSLATION protein_coding - CCDS27637.1 1 752.0 0.0 11.098 7.9 169.0 0.0 -4,-2 1.0 16 10.676 PRINCIPAL:3 ENSMUSG00000042632 Pla2g6 ENSMUST00000173632 ENSMUSP00000133998 TRANSLATION protein_coding stop - 5 204.0 0.0 1.0 0.0 38.8 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000042632 Pla2g6 ENSMUST00000166977 ENSMUSP00000132071 TRANSLATION protein_coding - CCDS27637.1 1 752.0 0.0 11.098 7.9 169.0 0.0 -4,-2 1.0 16 10.676 PRINCIPAL:3 ENSMUSG00000042632 Pla2g6 ENSMUST00000174375 - NO_TRANSLATION retained_intron ENSMUSG00000042632 Pla2g6 ENSMUST00000173109 ENSMUSP00000133554 TRANSLATION protein_coding stop - 3 199.0 0.0 1.0 0.0 36.9 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000042632 Pla2g6 ENSMUST00000172403 ENSMUSP00000131081 TRANSLATION protein_coding - CCDS27637.1 1 752.0 0.0 11.098 7.9 169.0 0.0 -4,-2 1.0 16 10.676 PRINCIPAL:3 ENSMUSG00000042632 Pla2g6 ENSMUST00000174089 - NO_TRANSLATION retained_intron ENSMUSG00000042632 Pla2g6 ENSMUST00000173163 ENSMUSP00000134456 TRANSLATION protein_coding - CCDS27637.1 5 752.0 0.0 11.098 7.9 169.0 0.0 -4,-2 1.0 16 10.676 PRINCIPAL:3 ENSMUSG00000042632 Pla2g6 ENSMUST00000229011 - NO_TRANSLATION retained_intron ENSMUSG00000042632 Pla2g6 ENSMUST00000173412 - NO_TRANSLATION retained_intron ENSMUSG00000022560 Slc52a2 ENSMUST00000230994 - NO_TRANSLATION retained_intron ENSMUSG00000022560 Slc52a2 ENSMUST00000023220 ENSMUSP00000023220 TRANSLATION protein_coding - CCDS27575.1 1 450.0 0.0 0.0 6.4 120.4 0.0 3,-2 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000042351 Grap2 ENSMUST00000230910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042351 Grap2 ENSMUST00000230856 ENSMUSP00000154860 TRANSLATION nonsense_mediated_decay - - - 85.0 0.0 0.75 0.0 27.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042351 Grap2 ENSMUST00000230573 ENSMUSP00000155135 TRANSLATION nonsense_mediated_decay - - - 53.0 0.0 0.816 0.0 26.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042351 Grap2 ENSMUST00000043149 ENSMUSP00000046532 TRANSLATION protein_coding - CCDS27663.1 1 322.0 0.0 4.25 4.7 178.0 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000042351 Grap2 ENSMUST00000229980 ENSMUSP00000155681 TRANSLATION protein_coding - CCDS27663.1 - 322.0 0.0 4.25 4.7 178.0 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000037646 Vps13b ENSMUST00000226579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037646 Vps13b ENSMUST00000228738 - NO_TRANSLATION retained_intron ENSMUSG00000037646 Vps13b ENSMUST00000227309 - NO_TRANSLATION retained_intron ENSMUSG00000037646 Vps13b ENSMUST00000228338 - NO_TRANSLATION retained_intron ENSMUSG00000037646 Vps13b ENSMUST00000227455 ENSMUSP00000153856 TRANSLATION protein_coding stop - - 46.0 0.0 0.6 0.0 41.8 0.0 -4,-5 0.0391 2 -2.0 MINOR ENSMUSG00000037646 Vps13b ENSMUST00000048646 ENSMUSP00000045490 TRANSLATION protein_coding - CCDS49592.1 5 3993.0 0.0 0.0649999999999999 6.8 215.4 0.0 -4,-5 1.0 57 8.648 PRINCIPAL:1 ENSMUSG00000037646 Vps13b ENSMUST00000227567 - NO_TRANSLATION retained_intron ENSMUSG00000060992 Copz1 ENSMUST00000100162 ENSMUSP00000097738 TRANSLATION protein_coding - CCDS27901.1 1 177.0 0.0 4.88 31.4 155.7 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000060992 Copz1 ENSMUST00000230893 ENSMUSP00000155674 TRANSLATION protein_coding - - - 163.0 0.0 4.88 0.0 155.7 0.0 -4,-6 0.0115 3 12.0 MINOR ENSMUSG00000060992 Copz1 ENSMUST00000229549 ENSMUSP00000154922 TRANSLATION nonsense_mediated_decay - - - 84.0 0.0 1.83 0.0 38.2 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000060992 Copz1 ENSMUST00000230417 - NO_TRANSLATION retained_intron ENSMUSG00000093550 Higd1c ENSMUST00000175683 ENSMUSP00000134927 TRANSLATION protein_coding - CCDS37210.1 3 96.0 0.0 2.015 8.9 60.5 2.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093550 Higd1c ENSMUST00000177211 ENSMUSP00000134848 TRANSLATION protein_coding - CCDS37210.1 1 96.0 0.0 2.015 8.9 60.5 2.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022270 Retreg1 ENSMUST00000228306 ENSMUSP00000154070 TRANSLATION protein_coding - - - 346.0 0.0 2.17 2.0 0.0 3.0 -4,-7 0.2506 5 6.336 MINOR ENSMUSG00000022270 Retreg1 ENSMUST00000226438 ENSMUSP00000154765 TRANSLATION protein_coding - - - 364.0 0.0 2.17 0.0 0.0 3.0 -1,-4 0.1359 5 6.0 MINOR ENSMUSG00000022270 Retreg1 ENSMUST00000227275 ENSMUSP00000154471 TRANSLATION protein_coding - CCDS37051.1 - 356.0 0.0 2.17 9.9 0.0 3.0 -4,-7 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000022270 Retreg1 ENSMUST00000022881 ENSMUSP00000022881 TRANSLATION protein_coding - CCDS37050.1 5 480.0 0.0 2.17 0.4 0.0 4.0 -4,-5 0.269 6 6.0 MINOR ENSMUSG00000022270 Retreg1 ENSMUST00000110438 ENSMUSP00000106068 TRANSLATION protein_coding - CCDS37051.1 1 356.0 0.0 2.17 9.9 0.0 3.0 -4,-7 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000022270 Retreg1 ENSMUST00000228327 ENSMUSP00000154377 TRANSLATION protein_coding stop - - 145.0 0.0 2.17 0.0 0.0 3.0 -4,-6 0.0499 2 -2.0 MINOR ENSMUSG00000022270 Retreg1 ENSMUST00000228600 ENSMUSP00000154407 TRANSLATION protein_coding stop - - 40.0 0.0 1.2 0.0 0.0 3.0 -4,-7 0.022 - -2.0 MINOR ENSMUSG00000022270 Retreg1 ENSMUST00000226750 ENSMUSP00000154791 TRANSLATION protein_coding stop - - 54.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0028 1 -2.0 MINOR ENSMUSG00000038760 Trhr ENSMUST00000038856 ENSMUSP00000036320 TRANSLATION protein_coding - CCDS37068.1 1 393.0 0.0 1.95 7.9 164.9 5.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000038760 Trhr ENSMUST00000227505 ENSMUSP00000154140 TRANSLATION nonsense_mediated_decay - - - 83.0 0.0 0.6 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000038760 Trhr ENSMUST00000110289 ENSMUSP00000105918 TRANSLATION protein_coding - CCDS37068.1 2 393.0 0.0 1.95 7.9 164.9 5.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000038760 Trhr ENSMUST00000226626 ENSMUSP00000154650 TRANSLATION nonsense_mediated_decay - CCDS37068.1 - 393.0 0.0 1.95 7.9 164.9 5.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000022449 Adamts20 ENSMUST00000129195 - NO_TRANSLATION retained_intron ENSMUSG00000022449 Adamts20 ENSMUST00000035342 ENSMUSP00000036330 TRANSLATION protein_coding - CCDS27770.1 1 1906.0 18.0 10.7 1.5 821.1 0.0 1,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000022449 Adamts20 ENSMUST00000155907 ENSMUSP00000121696 TRANSLATION protein_coding - CCDS49711.1 1 1425.0 18.0 10.7 0.0 506.1 0.0 1,-3 0.3252 - 12.0 MINOR ENSMUSG00000022449 Adamts20 ENSMUST00000128797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015377 Dennd6b ENSMUST00000078953 ENSMUSP00000077978 TRANSLATION protein_coding - CCDS57000.1 1 585.0 0.0 0.0 7.7 26.8 0.0 -4,-2 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000015377 Dennd6b ENSMUST00000230111 - NO_TRANSLATION retained_intron ENSMUSG00000015377 Dennd6b ENSMUST00000229935 - NO_TRANSLATION retained_intron ENSMUSG00000015377 Dennd6b ENSMUST00000230823 - NO_TRANSLATION retained_intron ENSMUSG00000015377 Dennd6b ENSMUST00000229416 - NO_TRANSLATION retained_intron ENSMUSG00000015377 Dennd6b ENSMUST00000229755 ENSMUSP00000155612 TRANSLATION nonsense_mediated_decay - - - 64.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 1 -2.0 MINOR ENSMUSG00000062373 Tmem65 ENSMUST00000226578 - NO_TRANSLATION retained_intron ENSMUSG00000062373 Tmem65 ENSMUST00000072113 ENSMUSP00000071984 TRANSLATION protein_coding - CCDS27493.1 1 234.0 0.0 4.85 0.0 157.4 0.0 -3,1 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000042303 Sgsm3 ENSMUST00000154904 ENSMUSP00000118050 TRANSLATION protein_coding start/stop - 2 216.0 0.0 2.9 0.0 46.4 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000042303 Sgsm3 ENSMUST00000134511 - NO_TRANSLATION retained_intron ENSMUSG00000042303 Sgsm3 ENSMUST00000134559 - NO_TRANSLATION retained_intron ENSMUSG00000042303 Sgsm3 ENSMUST00000156783 - NO_TRANSLATION retained_intron ENSMUSG00000042303 Sgsm3 ENSMUST00000156064 - NO_TRANSLATION retained_intron ENSMUSG00000042303 Sgsm3 ENSMUST00000149345 - NO_TRANSLATION retained_intron ENSMUSG00000042303 Sgsm3 ENSMUST00000124845 ENSMUSP00000155794 TRANSLATION protein_coding start - 1 651.0 0.0 6.082 0.0 324.6 2.0 -4,-5 0.0177 10 -2.0 MINOR ENSMUSG00000042303 Sgsm3 ENSMUST00000139517 ENSMUSP00000122543 TRANSLATION protein_coding - CCDS49673.2 1 750.0 0.0 6.782 22.1 334.3 2.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000042303 Sgsm3 ENSMUST00000228971 ENSMUSP00000155256 TRANSLATION protein_coding stop - - 95.0 0.0 0.682 0.0 0.0 0.0 -4,-6 0.0162 - -2.0 MINOR ENSMUSG00000042303 Sgsm3 ENSMUST00000229727 ENSMUSP00000155753 TRANSLATION protein_coding stop - - 82.0 0.0 0.55 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042303 Sgsm3 ENSMUST00000143147 ENSMUSP00000115920 TRANSLATION nonsense_mediated_decay - - 2 36.0 0.0 0.3 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042303 Sgsm3 ENSMUST00000137004 ENSMUSP00000155595 TRANSLATION protein_coding - - 1 67.0 0.0 0.45 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000042303 Sgsm3 ENSMUST00000137255 ENSMUSP00000122110 TRANSLATION protein_coding stop - 3 83.0 0.0 0.55 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042303 Sgsm3 ENSMUST00000138550 - NO_TRANSLATION retained_intron ENSMUSG00000042303 Sgsm3 ENSMUST00000132039 - NO_TRANSLATION retained_intron ENSMUSG00000022452 Smdt1 ENSMUST00000162705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022452 Smdt1 ENSMUST00000023086 ENSMUSP00000023086 TRANSLATION protein_coding - CCDS27688.1 1 107.0 0.0 2.0 0.0 125.9 2.0 -4,0 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000022452 Smdt1 ENSMUST00000160994 ENSMUSP00000155174 TRANSLATION protein_coding - - 3 45.0 0.0 1.5 0.0 90.3 2.0 -2,-5 0.0062 2 8.364 MINOR ENSMUSG00000022452 Smdt1 ENSMUST00000161892 ENSMUSP00000125120 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000022452 Smdt1 ENSMUST00000159054 ENSMUSP00000125429 TRANSLATION protein_coding - - 5 71.0 0.0 1.5 0.0 94.3 2.0 -4,-1 0.0062 2 8.604 MINOR ENSMUSG00000022452 Smdt1 ENSMUST00000230165 - NO_TRANSLATION retained_intron ENSMUSG00000042524 Sun2 ENSMUST00000162064 - NO_TRANSLATION retained_intron ENSMUSG00000042524 Sun2 ENSMUST00000100439 ENSMUSP00000098006 TRANSLATION protein_coding - CCDS56992.1 1 729.0 0.0 6.75 6.1 161.2 4.0 -4,-7 1.0 25 10.0 PRINCIPAL:4 ENSMUSG00000042524 Sun2 ENSMUST00000231189 - NO_TRANSLATION retained_intron ENSMUSG00000042524 Sun2 ENSMUST00000162392 - NO_TRANSLATION retained_intron ENSMUSG00000042524 Sun2 ENSMUST00000046259 ENSMUSP00000047864 TRANSLATION protein_coding - CCDS56993.1 1 731.0 0.0 6.75 5.0 161.2 4.0 -4,-7 0.9677 25 9.568 ALTERNATIVE:1 ENSMUSG00000042524 Sun2 ENSMUST00000160355 ENSMUSP00000124495 TRANSLATION protein_coding stop - 3 2.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0307 - -2.0 MINOR ENSMUSG00000042524 Sun2 ENSMUST00000089311 ENSMUSP00000086724 TRANSLATION protein_coding - CCDS27649.1 1 699.0 0.0 6.75 0.0 161.2 3.0 -4,-7 0.2687 24 8.0 MINOR ENSMUSG00000042524 Sun2 ENSMUST00000159660 ENSMUSP00000124504 TRANSLATION protein_coding stop - 5 109.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000042524 Sun2 ENSMUST00000162499 ENSMUSP00000124515 TRANSLATION protein_coding stop - 2 38.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000042524 Sun2 ENSMUST00000159762 - NO_TRANSLATION retained_intron ENSMUSG00000055024 Ep300 ENSMUST00000206431 - NO_TRANSLATION retained_intron ENSMUSG00000055024 Ep300 ENSMUST00000205816 - NO_TRANSLATION retained_intron ENSMUSG00000055024 Ep300 ENSMUST00000189338 - NO_TRANSLATION retained_intron ENSMUSG00000055024 Ep300 ENSMUST00000206936 ENSMUSP00000145639 TRANSLATION protein_coding start/stop - 5 133.0 0.0 0.8 0.0 25.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055024 Ep300 ENSMUST00000185375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055024 Ep300 ENSMUST00000068387 ENSMUSP00000066789 TRANSLATION protein_coding - CCDS37149.1 1 2412.0 12.0 17.19 0.4 794.5 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000055024 Ep300 ENSMUST00000206833 ENSMUSP00000146251 TRANSLATION protein_coding start - - 46.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.001 - -2.0 MINOR ENSMUSG00000055024 Ep300 ENSMUST00000187776 - NO_TRANSLATION retained_intron ENSMUSG00000055024 Ep300 ENSMUST00000185967 ENSMUSP00000139889 TRANSLATION protein_coding start/stop - 3 187.0 0.0 1.84 0.0 99.7 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000055024 Ep300 ENSMUST00000190035 - NO_TRANSLATION retained_intron ENSMUSG00000037579 Kcnh3 ENSMUST00000228983 - NO_TRANSLATION retained_intron ENSMUSG00000037579 Kcnh3 ENSMUST00000230973 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037579 Kcnh3 ENSMUST00000230552 - NO_TRANSLATION retained_intron ENSMUSG00000037579 Kcnh3 ENSMUST00000041415 ENSMUSP00000040548 TRANSLATION protein_coding - CCDS27817.1 1 1095.0 0.0 7.87 1.1 208.7 0.0 -4,-7 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000036561 Ppp6r2 ENSMUST00000226967 - NO_TRANSLATION retained_intron ENSMUSG00000036561 Ppp6r2 ENSMUST00000228284 ENSMUSP00000154087 TRANSLATION protein_coding - CCDS27743.1 - 923.0 0.0 0.0 1.1 238.2 0.0 -4,-5 0.5332 21 1.0 ALTERNATIVE:2 ENSMUSG00000036561 Ppp6r2 ENSMUST00000226875 - NO_TRANSLATION retained_intron ENSMUSG00000036561 Ppp6r2 ENSMUST00000238818 ENSMUSP00000159040 TRANSLATION protein_coding - - - 950.0 0.0 0.0 1.1 238.2 0.0 -4,-5 0.7997 21 1.0 PRINCIPAL:2 ENSMUSG00000036561 Ppp6r2 ENSMUST00000227951 ENSMUSP00000154743 TRANSLATION protein_coding stop - - 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0246 - -2.0 MINOR ENSMUSG00000036561 Ppp6r2 ENSMUST00000226779 - NO_TRANSLATION retained_intron ENSMUSG00000036561 Ppp6r2 ENSMUST00000227011 - NO_TRANSLATION retained_intron ENSMUSG00000036561 Ppp6r2 ENSMUST00000088788 ENSMUSP00000086167 TRANSLATION protein_coding - CCDS27743.1 5 923.0 0.0 0.0 1.1 238.2 0.0 -4,-5 0.5332 21 1.0 ALTERNATIVE:2 ENSMUSG00000036561 Ppp6r2 ENSMUST00000226221 ENSMUSP00000154297 TRANSLATION protein_coding - - - 170.0 0.0 0.0 0.0 58.2 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000033669 Zfp7 ENSMUST00000229729 - NO_TRANSLATION retained_intron ENSMUSG00000033669 Zfp7 ENSMUST00000229831 ENSMUSP00000155815 TRANSLATION protein_coding stop - - 103.0 0.0 1.0 0.0 74.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033669 Zfp7 ENSMUST00000023179 ENSMUSP00000023179 TRANSLATION protein_coding - CCDS37124.1 1 685.0 64.0 2.4 0.0 366.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033669 Zfp7 ENSMUST00000230954 - NO_TRANSLATION retained_intron ENSMUSG00000033669 Zfp7 ENSMUST00000230106 ENSMUSP00000155599 TRANSLATION protein_coding - CCDS37124.1 - 685.0 64.0 2.4 0.0 366.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033669 Zfp7 ENSMUST00000229990 ENSMUSP00000154942 TRANSLATION protein_coding - - - 131.0 0.0 1.6 0.0 73.4 0.0 -4,-5 0.0 - 4.002 MINOR ENSMUSG00000022993 Tex49 ENSMUST00000023728 ENSMUSP00000023728 TRANSLATION protein_coding - CCDS49722.1 1 131.0 0.0 2.1 3.9 0.0 0.0 -4,-2 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000063234 Gpr84 ENSMUST00000079824 ENSMUSP00000078753 TRANSLATION protein_coding - CCDS27902.1 1 396.0 0.0 0.32 9.2 126.4 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036661 Dennd3 ENSMUST00000160267 ENSMUSP00000124538 TRANSLATION nonsense_mediated_decay start - 3 134.0 0.0 0.85 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000036661 Dennd3 ENSMUST00000159322 - NO_TRANSLATION retained_intron ENSMUSG00000036661 Dennd3 ENSMUST00000043414 ENSMUSP00000046774 TRANSLATION protein_coding - CCDS37100.1 1 1274.0 0.0 4.182 0.0 170.8 0.0 -3,-6 1.0 12 10.998 PRINCIPAL:1 ENSMUSG00000036661 Dennd3 ENSMUST00000173292 ENSMUSP00000134002 TRANSLATION nonsense_mediated_decay - - 1 1139.0 0.0 4.682 0.0 170.8 0.0 -3,-6 0.3188 11 -2.0 MINOR ENSMUSG00000036661 Dennd3 ENSMUST00000162488 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036661 Dennd3 ENSMUST00000162824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036661 Dennd3 ENSMUST00000160727 - NO_TRANSLATION retained_intron ENSMUSG00000108748 Gm44579 ENSMUST00000142443 ENSMUSP00000153744 TRANSLATION protein_coding,RT - - 5 318.0 0.0 1.0 0.0 161.3 0.0 -4,-7 0.7963 - -2.0 PRINCIPAL:1 ENSMUSG00000022439 Parvg ENSMUST00000139235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022439 Parvg ENSMUST00000145809 ENSMUSP00000154741 TRANSLATION protein_coding stop - 3 56.0 0.0 0.0 0.0 28.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022439 Parvg ENSMUST00000125928 ENSMUSP00000115109 TRANSLATION protein_coding stop - 2 122.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022439 Parvg ENSMUST00000023074 ENSMUSP00000023074 TRANSLATION protein_coding - CCDS27710.1 1 331.0 0.0 3.5 5.8 101.2 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000022439 Parvg ENSMUST00000151072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022439 Parvg ENSMUST00000127551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022439 Parvg ENSMUST00000163667 ENSMUSP00000131443 TRANSLATION protein_coding - CCDS49686.1 5 384.0 0.0 3.5 0.0 101.2 0.0 -4,-5 0.1508 5 12.0 MINOR ENSMUSG00000062037 Or8s16 ENSMUST00000079736 ENSMUSP00000078672 TRANSLATION protein_coding - CCDS27790.1 - 319.0 0.0 1.0 0.8 158.2 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062037 Or8s16 ENSMUST00000216901 ENSMUSP00000150788 TRANSLATION protein_coding - CCDS27790.1 5 319.0 0.0 1.0 0.8 158.2 5.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079025 Gsdmc ENSMUST00000173503 ENSMUSP00000133683 TRANSLATION protein_coding - - 5 459.0 0.0 3.977 0.0 522.6 0.0 -4,-5 0.0573 7 9.708 MINOR ENSMUSG00000079025 Gsdmc ENSMUST00000110125 ENSMUSP00000105752 TRANSLATION protein_coding - CCDS37086.1 1 468.0 0.0 4.109 0.0 556.4 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000054277 Arfgap3 ENSMUST00000067215 ENSMUSP00000064893 TRANSLATION protein_coding - CCDS49683.1 1 524.0 4.0 3.8 4.8 108.9 0.0 -4,-5 1.0 24 14.0 PRINCIPAL:4 ENSMUSG00000054277 Arfgap3 ENSMUST00000226124 ENSMUSP00000154712 TRANSLATION protein_coding - - - 523.0 4.0 3.8 4.8 108.9 0.0 -4,-5 0.8037 24 14.0 ALTERNATIVE:1 ENSMUSG00000054277 Arfgap3 ENSMUST00000227511 - NO_TRANSLATION retained_intron ENSMUSG00000054277 Arfgap3 ENSMUST00000226411 - NO_TRANSLATION retained_intron ENSMUSG00000054277 Arfgap3 ENSMUST00000226816 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054277 Arfgap3 ENSMUST00000226764 ENSMUSP00000154365 TRANSLATION protein_coding start - - 105.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 4 -2.0 MINOR ENSMUSG00000022342 Kcnv1 ENSMUST00000228536 - NO_TRANSLATION retained_intron ENSMUSG00000022342 Kcnv1 ENSMUST00000022967 ENSMUSP00000022967 TRANSLATION protein_coding - CCDS27459.1 1 503.0 0.0 1.032 7.8 258.1 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000058586 Serhl ENSMUST00000165371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058586 Serhl ENSMUST00000172101 - NO_TRANSLATION retained_intron ENSMUSG00000058586 Serhl ENSMUST00000169814 ENSMUSP00000127495 TRANSLATION nonsense_mediated_decay start - 3 59.0 0.0 1.48 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000058586 Serhl ENSMUST00000167645 - NO_TRANSLATION retained_intron ENSMUSG00000058586 Serhl ENSMUST00000169461 - NO_TRANSLATION retained_intron ENSMUSG00000058586 Serhl ENSMUST00000164817 - NO_TRANSLATION retained_intron ENSMUSG00000058586 Serhl ENSMUST00000170891 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058586 Serhl ENSMUST00000167750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058586 Serhl ENSMUST00000168029 ENSMUSP00000128802 TRANSLATION protein_coding stop - 3 99.0 2.0 3.08 0.0 40.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058586 Serhl ENSMUST00000171488 - NO_TRANSLATION retained_intron ENSMUSG00000058586 Serhl ENSMUST00000167862 ENSMUSP00000132086 TRANSLATION protein_coding stop - 3 38.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058586 Serhl ENSMUST00000167635 - NO_TRANSLATION retained_intron ENSMUSG00000058586 Serhl ENSMUST00000166427 ENSMUSP00000132686 TRANSLATION protein_coding - - 1 321.0 5.0 8.61 0.0 66.1 0.0 -4,-5 0.0977 9 11.0 ALTERNATIVE:2 ENSMUSG00000058586 Serhl ENSMUST00000078218 ENSMUSP00000077345 TRANSLATION protein_coding - CCDS49682.1 1 311.0 5.0 8.31 1.1 66.2 0.0 -4,-7 1.0 9 11.4 PRINCIPAL:2 ENSMUSG00000058586 Serhl ENSMUST00000142265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058586 Serhl ENSMUST00000169702 - NO_TRANSLATION retained_intron ENSMUSG00000058586 Serhl ENSMUST00000171212 - NO_TRANSLATION retained_intron ENSMUSG00000058586 Serhl ENSMUST00000167389 ENSMUSP00000128251 TRANSLATION protein_coding stop - 5 53.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047295 Smgc ENSMUST00000136172 ENSMUSP00000119575 TRANSLATION protein_coding start - 1 320.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0508 3 -2.0 MINOR ENSMUSG00000047295 Smgc ENSMUST00000088555 ENSMUSP00000085915 TRANSLATION protein_coding - CCDS27762.1 1 733.0 0.0 0.0 0.0 0.0 0.0 4,-2 0.507 5 0.0 ALTERNATIVE:2 ENSMUSG00000047295 Smgc ENSMUST00000109276 ENSMUSP00000104899 TRANSLATION protein_coding - - 1 157.0 0.0 0.0 0.0 0.0 0.0 3,-1 0.0879 2 0.0 ALTERNATIVE:2 ENSMUSG00000047295 Smgc ENSMUST00000126508 ENSMUSP00000120826 TRANSLATION protein_coding stop - 3 186.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.076 2 -2.0 MINOR ENSMUSG00000047295 Smgc ENSMUST00000123935 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047295 Smgc ENSMUST00000109277 ENSMUSP00000104900 TRANSLATION protein_coding - - 1 128.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.082 2 0.0 ALTERNATIVE:2 ENSMUSG00000047295 Smgc ENSMUST00000143271 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047295 Smgc ENSMUST00000132674 ENSMUSP00000120578 TRANSLATION protein_coding start - 5 350.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0505 2 -2.0 MINOR ENSMUSG00000047295 Smgc ENSMUST00000130014 ENSMUSP00000118530 TRANSLATION protein_coding start - 1 385.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0466 5 -2.0 MINOR ENSMUSG00000047295 Smgc ENSMUST00000100293 ENSMUSP00000097866 TRANSLATION protein_coding - - 1 700.0 0.0 0.0 0.0 0.0 0.0 4,-2 0.6811 5 0.0 PRINCIPAL:4 ENSMUSG00000035891 Cerk ENSMUST00000044332 ENSMUSP00000038203 TRANSLATION protein_coding - CCDS27728.1 1 531.0 10.0 2.899 0.4 101.4 0.0 -4,0 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000035891 Cerk ENSMUST00000156546 ENSMUSP00000119472 TRANSLATION protein_coding - - 1 226.0 0.0 -0.236 0.0 0.0 0.0 -4,-5 0.0012 3 0.0 MINOR ENSMUSG00000035891 Cerk ENSMUST00000150767 - NO_TRANSLATION retained_intron ENSMUSG00000060284 Sp7 ENSMUST00000231100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060284 Sp7 ENSMUST00000078508 ENSMUSP00000077596 TRANSLATION protein_coding - CCDS37228.1 1 428.0 12.0 0.2 9.8 67.3 0.0 -4,-5 1.0 1 17.0 PRINCIPAL:2 ENSMUSG00000060284 Sp7 ENSMUST00000229464 ENSMUSP00000154859 TRANSLATION protein_coding - - - 410.0 12.0 0.2 6.8 67.3 0.0 -4,-6 0.7248 1 15.977 ALTERNATIVE:1 ENSMUSG00000022314 Rad21 ENSMUST00000022927 ENSMUSP00000022927 TRANSLATION protein_coding - CCDS27463.1 1 635.0 0.0 3.2 16.5 218.3 0.0 -4,-2 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000022314 Rad21 ENSMUST00000226529 ENSMUSP00000154815 TRANSLATION protein_coding stop - - 160.0 0.0 2.0 0.0 140.9 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000033065 Pfkm ENSMUST00000163507 ENSMUSP00000132803 TRANSLATION protein_coding - CCDS27786.1 5 780.0 41.0 20.25 15.1 683.3 0.0 -4,-5 1.0 27 22.0 PRINCIPAL:1 ENSMUSG00000033065 Pfkm ENSMUST00000230445 ENSMUSP00000155809 TRANSLATION protein_coding - CCDS27786.1 - 780.0 41.0 20.25 15.1 683.3 0.0 -4,-5 1.0 27 22.0 PRINCIPAL:1 ENSMUSG00000033065 Pfkm ENSMUST00000051226 ENSMUSP00000059801 TRANSLATION protein_coding - CCDS27786.1 1 780.0 41.0 20.25 15.1 683.3 0.0 -4,-5 1.0 27 22.0 PRINCIPAL:1 ENSMUSG00000033065 Pfkm ENSMUST00000229280 ENSMUSP00000154896 TRANSLATION protein_coding stop - - 117.0 9.0 3.25 0.0 117.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000033065 Pfkm ENSMUST00000229344 ENSMUSP00000155453 TRANSLATION protein_coding stop - - 197.0 15.0 4.32 0.0 141.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000023484 Prph ENSMUST00000047104 ENSMUSP00000049303 TRANSLATION protein_coding - CCDS27813.1 1 507.0 0.0 5.4 0.3 412.4 0.0 -4,0 0.226 19 6.5 MINOR ENSMUSG00000023484 Prph ENSMUST00000024249 ENSMUSP00000024249 TRANSLATION protein_coding - CCDS49727.1 1 475.0 0.0 5.4 0.3 423.7 0.0 -4,0 1.0 20 8.0 PRINCIPAL:1 ENSMUSG00000023484 Prph ENSMUST00000230021 ENSMUSP00000155294 TRANSLATION protein_coding - - - 506.0 0.0 5.4 0.3 412.4 0.0 -4,0 0.0669 19 6.5 MINOR ENSMUSG00000023484 Prph ENSMUST00000229268 ENSMUSP00000155819 TRANSLATION protein_coding stop - - 48.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000091680 Klhdc7b ENSMUST00000166926 ENSMUSP00000130884 TRANSLATION protein_coding - CCDS49702.1 - 605.0 0.0 0.0 0.0 66.2 0.0 -4,-2 0.2919 - 2.0 ALTERNATIVE:2 ENSMUSG00000091680 Klhdc7b ENSMUST00000225666 ENSMUSP00000153286 TRANSLATION protein_coding - - - 1263.0 0.0 0.0 0.0 66.2 0.0 -4,-7 0.902 - 2.0 PRINCIPAL:2 ENSMUSG00000055762 Eef1d ENSMUST00000055220 - NO_TRANSLATION retained_intron ENSMUSG00000055762 Eef1d ENSMUST00000116440 ENSMUSP00000112141 TRANSLATION protein_coding - CCDS70638.1 3 257.0 2.0 4.58 4.2 174.5 0.0 -4,-5 0.3945 10 11.044 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000151066 ENSMUSP00000118889 TRANSLATION protein_coding - - 5 190.0 2.0 4.58 0.0 174.5 0.0 -4,-5 0.0164 6 10.0 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000137426 ENSMUSP00000114753 TRANSLATION protein_coding start - 5 552.0 2.0 4.58 0.0 174.5 0.0 -4,-6 0.0404 15 -2.0 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000109972 ENSMUSP00000105599 TRANSLATION protein_coding - CCDS70638.1 1 257.0 2.0 4.58 4.2 174.5 0.0 -4,-5 0.3945 10 11.044 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000134222 - NO_TRANSLATION retained_intron ENSMUSG00000055762 Eef1d ENSMUST00000123712 ENSMUSP00000122155 TRANSLATION protein_coding stop - 2 129.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000145764 ENSMUSP00000117782 TRANSLATION protein_coding stop - 3 101.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000129800 - NO_TRANSLATION retained_intron ENSMUSG00000055762 Eef1d ENSMUST00000089680 ENSMUSP00000087109 TRANSLATION protein_coding - CCDS70639.1 1 276.0 2.0 4.58 7.5 174.5 0.0 -4,-5 0.8719 9 12.121 ALTERNATIVE:1 ENSMUSG00000055762 Eef1d ENSMUST00000141475 ENSMUSP00000123388 TRANSLATION protein_coding stop - 2 228.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.001 3 -2.0 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000154584 ENSMUSP00000116360 TRANSLATION protein_coding - CCDS27554.1 1 281.0 2.0 4.58 10.2 174.5 0.0 -4,-5 1.0 11 13.0 PRINCIPAL:3 ENSMUSG00000055762 Eef1d ENSMUST00000141268 ENSMUSP00000115553 TRANSLATION protein_coding stop - 3 210.0 0.0 2.0 0.0 49.2 0.0 -4,-5 0.0003 7 -2.0 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000089681 ENSMUSP00000087110 TRANSLATION protein_coding - CCDS27553.1 1 660.0 2.0 4.58 0.0 174.5 0.0 -4,-6 0.2267 17 10.0 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000127550 ENSMUSP00000120735 TRANSLATION protein_coding stop - 1 182.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000144614 ENSMUSP00000123005 TRANSLATION protein_coding stop - 5 193.0 0.0 2.0 0.0 49.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000055762 Eef1d ENSMUST00000023235 ENSMUSP00000023235 TRANSLATION protein_coding stop - 3 245.0 1.0 3.33 0.0 115.6 0.0 -4,-5 0.0004 9 -2.0 MINOR ENSMUSG00000050697 Prkaa1 ENSMUST00000051186 ENSMUSP00000063166 TRANSLATION protein_coding - CCDS49574.1 1 559.0 18.0 7.882 12.5 250.0 0.0 -4,-7 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000050697 Prkaa1 ENSMUST00000228218 ENSMUSP00000154562 TRANSLATION protein_coding - - - 550.0 18.0 7.75 9.2 250.0 0.0 -4,-5 0.8013 14 19.875 MINOR ENSMUSG00000022186 Oxct1 ENSMUST00000131240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022186 Oxct1 ENSMUST00000124591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022186 Oxct1 ENSMUST00000138927 ENSMUSP00000116343 TRANSLATION protein_coding - - 1 486.0 16.0 13.0 0.0 395.5 0.0 -4,0 0.0075 15 14.796 MINOR ENSMUSG00000022186 Oxct1 ENSMUST00000110690 ENSMUSP00000106318 TRANSLATION protein_coding - CCDS27361.1 1 520.0 16.0 14.0 22.6 415.6 0.0 -4,0 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000022186 Oxct1 ENSMUST00000133130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022372 Sla ENSMUST00000164939 - NO_TRANSLATION retained_intron ENSMUSG00000022372 Sla ENSMUST00000168522 ENSMUSP00000131865 TRANSLATION protein_coding - CCDS49622.1 1 297.0 0.0 4.65 3.5 94.5 0.0 -4,-7 0.3882 2 12.774 MINOR ENSMUSG00000022372 Sla ENSMUST00000100572 ENSMUSP00000098138 TRANSLATION protein_coding - CCDS27509.1 1 281.0 0.0 4.65 10.7 94.5 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000022372 Sla ENSMUST00000168589 ENSMUSP00000130222 TRANSLATION protein_coding - CCDS27509.1 1 281.0 0.0 4.65 10.7 94.5 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000022372 Sla ENSMUST00000164163 ENSMUSP00000127901 TRANSLATION protein_coding - CCDS27509.1 5 281.0 0.0 4.65 10.7 94.5 0.0 -4,-6 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000061360 Phf5a ENSMUST00000160415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061360 Phf5a ENSMUST00000023117 ENSMUSP00000023117 TRANSLATION protein_coding - CCDS27674.1 1 110.0 12.0 2.58 31.9 167.0 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000061360 Phf5a ENSMUST00000230134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060311 Mucl1 ENSMUST00000226484 ENSMUSP00000154525 TRANSLATION protein_coding - - - 175.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.6273 - 0.0 PRINCIPAL:1 ENSMUSG00000023051 Tarbp2 ENSMUST00000229805 ENSMUSP00000155826 TRANSLATION protein_coding stop - - 42.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023051 Tarbp2 ENSMUST00000149200 ENSMUSP00000123213 TRANSLATION nonsense_mediated_decay - - 3 58.0 0.0 1.0 0.0 27.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023051 Tarbp2 ENSMUST00000136968 - NO_TRANSLATION retained_intron ENSMUSG00000023051 Tarbp2 ENSMUST00000141266 - NO_TRANSLATION retained_intron ENSMUSG00000023051 Tarbp2 ENSMUST00000134033 - NO_TRANSLATION retained_intron ENSMUSG00000023051 Tarbp2 ENSMUST00000153171 - NO_TRANSLATION retained_intron ENSMUSG00000023051 Tarbp2 ENSMUST00000142194 ENSMUSP00000123339 TRANSLATION protein_coding stop - 3 243.0 0.0 4.9975 0.0 113.3 0.0 -4,-5 0.002 6 -2.0 MINOR ENSMUSG00000023051 Tarbp2 ENSMUST00000150393 ENSMUSP00000120315 TRANSLATION protein_coding stop - 5 89.0 0.0 1.7475 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023051 Tarbp2 ENSMUST00000154451 - NO_TRANSLATION retained_intron ENSMUSG00000023051 Tarbp2 ENSMUST00000100168 ENSMUSP00000097744 TRANSLATION protein_coding - CCDS57013.1 1 274.0 0.0 5.2995 0.4 56.8 0.0 -4,-5 0.0075 4 4.716 MINOR ENSMUSG00000023051 Tarbp2 ENSMUST00000023813 ENSMUSP00000023813 TRANSLATION protein_coding - CCDS27886.1 1 365.0 0.0 7.2475 9.1 113.3 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000023051 Tarbp2 ENSMUST00000146756 ENSMUSP00000121748 TRANSLATION protein_coding stop - 3 225.0 0.0 4.9975 0.0 113.3 0.0 -4,-5 0.0025 5 -2.0 MINOR ENSMUSG00000023051 Tarbp2 ENSMUST00000154948 ENSMUSP00000154902 TRANSLATION nonsense_mediated_decay start - 3 111.0 0.0 2.198 0.0 56.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023051 Tarbp2 ENSMUST00000249596 ENSMUSP00000159805 TRANSLATION protein_coding - - - 374.0 0.0 7.2475 0.0 113.3 0.0 -4,-5 0.0759 7 12.0 MINOR ENSMUSG00000023051 Tarbp2 ENSMUST00000131184 ENSMUSP00000117964 TRANSLATION nonsense_mediated_decay - - 1 79.0 0.0 1.25 0.0 27.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022184 Fbxo4 ENSMUST00000148169 - NO_TRANSLATION retained_intron ENSMUSG00000022184 Fbxo4 ENSMUST00000022791 ENSMUSP00000022791 TRANSLATION protein_coding - CCDS27359.1 1 385.0 0.0 3.3 8.4 27.5 0.0 -4,-7 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000022184 Fbxo4 ENSMUST00000148817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079022 Col22a1 ENSMUST00000162081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079022 Col22a1 ENSMUST00000159993 ENSMUSP00000125069 TRANSLATION protein_coding - CCDS49627.1 5 1613.0 5.0 19.2645 3.3 493.0 0.0 2,-1 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000079022 Col22a1 ENSMUST00000160513 ENSMUSP00000124270 TRANSLATION protein_coding start - 3 203.0 0.0 4.84 0.0 77.9 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000079022 Col22a1 ENSMUST00000229585 ENSMUSP00000155641 TRANSLATION protein_coding - - - 1058.0 0.0 15.1165 0.1 340.4 0.0 -4,-5 0.0635 1 0.0 MINOR ENSMUSG00000022426 Josd1 ENSMUST00000023061 ENSMUSP00000023061 TRANSLATION protein_coding - CCDS27647.1 1 202.0 0.0 3.4 22.7 94.9 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000022559 Fbxl6 ENSMUST00000228994 - NO_TRANSLATION retained_intron ENSMUSG00000022559 Fbxl6 ENSMUST00000229813 - NO_TRANSLATION retained_intron ENSMUSG00000022559 Fbxl6 ENSMUST00000230938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022559 Fbxl6 ENSMUST00000023219 ENSMUSP00000023219 TRANSLATION protein_coding - CCDS49653.1 1 535.0 0.0 3.265 0.4 43.6 0.0 -4,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000022559 Fbxl6 ENSMUST00000229273 - NO_TRANSLATION retained_intron ENSMUSG00000022559 Fbxl6 ENSMUST00000230513 - NO_TRANSLATION retained_intron ENSMUSG00000063780 Or8s10 ENSMUST00000215320 ENSMUSP00000151156 TRANSLATION protein_coding - CCDS27793.1 5 308.0 0.0 3.0 7.2 182.8 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063780 Or8s10 ENSMUST00000213608 ENSMUSP00000149792 TRANSLATION protein_coding - CCDS27793.1 5 308.0 0.0 3.0 7.2 182.8 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063780 Or8s10 ENSMUST00000075851 ENSMUSP00000075248 TRANSLATION protein_coding - CCDS27793.1 - 308.0 0.0 3.0 7.2 182.8 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063780 Or8s10 ENSMUST00000205491 ENSMUSP00000145796 TRANSLATION protein_coding stop - 5 31.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022595 Lypd2 ENSMUST00000188716 - NO_TRANSLATION retained_intron ENSMUSG00000022595 Lypd2 ENSMUST00000023260 ENSMUSP00000023260 TRANSLATION protein_coding - CCDS27529.1 1 127.0 0.0 1.3 0.4 27.6 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037386 Rims2 ENSMUST00000042917 ENSMUSP00000048719 TRANSLATION protein_coding - CCDS56982.1 1 1572.0 11.0 11.4 4.2 183.6 0.0 -4,-2 0.7729 25 14.844 PRINCIPAL:3 ENSMUSG00000037386 Rims2 ENSMUST00000082054 ENSMUSP00000080711 TRANSLATION protein_coding - CCDS37067.1 2 1530.0 11.0 11.4 7.2 167.2 0.0 -4,-2 1.0 23 15.298 ALTERNATIVE:1 ENSMUSG00000037386 Rims2 ENSMUST00000227243 ENSMUSP00000154153 TRANSLATION protein_coding - - - 1550.0 11.0 11.4 6.2 183.6 0.0 -4,-2 0.8051 24 15.368 ALTERNATIVE:1 ENSMUSG00000037386 Rims2 ENSMUST00000227381 ENSMUSP00000154531 TRANSLATION protein_coding start - - 1297.0 3.0 10.0 0.0 128.4 0.0 -4,-7 0.0268 19 -2.0 MINOR ENSMUSG00000037386 Rims2 ENSMUST00000228269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037386 Rims2 ENSMUST00000228867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037386 Rims2 ENSMUST00000228460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037386 Rims2 ENSMUST00000227469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037386 Rims2 ENSMUST00000227830 - NO_TRANSLATION retained_intron ENSMUSG00000037386 Rims2 ENSMUST00000228839 ENSMUSP00000154645 TRANSLATION protein_coding stop - - 352.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0015 5 -2.0 MINOR ENSMUSG00000037386 Rims2 ENSMUST00000226243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037386 Rims2 ENSMUST00000226410 ENSMUSP00000153868 TRANSLATION protein_coding - - - 285.0 3.0 3.8 16.2 58.8 0.0 -4,-1 0.7803 4 5.332 MINOR ENSMUSG00000005360 Slc1a3 ENSMUST00000129325 - NO_TRANSLATION retained_intron ENSMUSG00000005360 Slc1a3 ENSMUST00000126747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005360 Slc1a3 ENSMUST00000005493 ENSMUSP00000005493 TRANSLATION protein_coding - CCDS27373.1 1 543.0 0.0 5.95 23.8 446.0 7.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000005360 Slc1a3 ENSMUST00000133309 - NO_TRANSLATION retained_intron ENSMUSG00000005360 Slc1a3 ENSMUST00000157065 ENSMUSP00000118902 TRANSLATION protein_coding - - 1 129.0 0.0 1.6 1.5 35.0 2.0 -4,-6 0.0309 - 0.088 MINOR ENSMUSG00000005360 Slc1a3 ENSMUST00000153455 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005360 Slc1a3 ENSMUST00000125997 - NO_TRANSLATION retained_intron ENSMUSG00000005360 Slc1a3 ENSMUST00000128879 - NO_TRANSLATION retained_intron ENSMUSG00000022584 Ly6c2 ENSMUST00000187864 - NO_TRANSLATION retained_intron ENSMUSG00000022584 Ly6c2 ENSMUST00000188214 ENSMUSP00000140825 TRANSLATION protein_coding - CCDS49638.1 1 131.0 0.0 2.0 0.1 55.3 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022584 Ly6c2 ENSMUST00000100542 ENSMUSP00000098110 TRANSLATION protein_coding - CCDS49638.1 1 131.0 0.0 2.0 0.1 55.3 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022584 Ly6c2 ENSMUST00000191451 ENSMUSP00000139556 TRANSLATION protein_coding - CCDS49638.1 2 131.0 0.0 2.0 0.1 55.3 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022552 Sharpin ENSMUST00000023211 ENSMUSP00000023211 TRANSLATION protein_coding - CCDS37121.1 1 380.0 4.0 6.165 0.7 167.2 0.0 -3,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000022552 Sharpin ENSMUST00000123112 - NO_TRANSLATION retained_intron ENSMUSG00000022552 Sharpin ENSMUST00000144816 - NO_TRANSLATION retained_intron ENSMUSG00000022552 Sharpin ENSMUST00000159429 ENSMUSP00000124755 TRANSLATION protein_coding start - 3 83.0 4.0 1.165 0.0 27.7 0.0 -4,-6 0.0008 1 -2.0 MINOR ENSMUSG00000022552 Sharpin ENSMUST00000137106 - NO_TRANSLATION retained_intron ENSMUSG00000022552 Sharpin ENSMUST00000230016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022552 Sharpin ENSMUST00000147001 - NO_TRANSLATION retained_intron ENSMUSG00000022552 Sharpin ENSMUST00000152151 - NO_TRANSLATION retained_intron ENSMUSG00000022552 Sharpin ENSMUST00000160560 ENSMUSP00000125382 TRANSLATION nonsense_mediated_decay - - 3 157.0 0.0 1.0 0.0 62.1 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000022552 Sharpin ENSMUST00000230314 ENSMUSP00000155231 TRANSLATION nonsense_mediated_decay - - - 157.0 0.0 1.0 0.0 62.1 0.0 -3,-6 0.0 1 -2.0 MINOR ENSMUSG00000022552 Sharpin ENSMUST00000229536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022552 Sharpin ENSMUST00000154477 - NO_TRANSLATION retained_intron ENSMUSG00000022552 Sharpin ENSMUST00000133993 - NO_TRANSLATION retained_intron ENSMUSG00000015001 Oc90 ENSMUST00000147776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015001 Oc90 ENSMUST00000156996 ENSMUSP00000121227 TRANSLATION protein_coding start - 1 454.0 3.0 3.41 0.0 179.4 0.0 -4,-5 0.0242 - -2.0 MINOR ENSMUSG00000015001 Oc90 ENSMUST00000079776 ENSMUSP00000078709 TRANSLATION protein_coding - CCDS84171.1 1 453.0 3.0 3.41 0.0 179.4 0.0 3,-2 0.3047 - 11.0 ALTERNATIVE:2 ENSMUSG00000015001 Oc90 ENSMUST00000135442 ENSMUSP00000114254 TRANSLATION protein_coding start/stop - 3 299.0 3.0 2.58 0.0 90.8 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000015001 Oc90 ENSMUST00000060522 ENSMUSP00000062865 TRANSLATION protein_coding - CCDS27508.1 1 485.0 3.0 3.41 2.2 179.4 0.0 3,-2 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000001285 Myg1 ENSMUST00000170078 - NO_TRANSLATION retained_intron ENSMUSG00000001285 Myg1 ENSMUST00000164019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001285 Myg1 ENSMUST00000113682 ENSMUSP00000109312 TRANSLATION protein_coding - CCDS27879.1 1 380.0 0.0 7.55 3.4 468.8 0.0 -1,0 1.0 15 13.0 PRINCIPAL:1 ENSMUSG00000001285 Myg1 ENSMUST00000168547 - NO_TRANSLATION retained_intron ENSMUSG00000001285 Myg1 ENSMUST00000171733 - NO_TRANSLATION retained_intron ENSMUSG00000001285 Myg1 ENSMUST00000171244 ENSMUSP00000129494 TRANSLATION protein_coding start/stop - 3 306.0 0.0 5.8 0.0 248.2 0.0 -4,-1 0.001 9 -2.0 MINOR ENSMUSG00000001285 Myg1 ENSMUST00000170281 - NO_TRANSLATION retained_intron ENSMUSG00000001285 Myg1 ENSMUST00000001331 ENSMUSP00000001331 TRANSLATION protein_coding start - 5 326.0 0.0 6.55 0.7 383.7 0.0 -2,0 0.0153 13 -2.0 MINOR ENSMUSG00000001285 Myg1 ENSMUST00000164961 - NO_TRANSLATION retained_intron ENSMUSG00000001285 Myg1 ENSMUST00000170713 - NO_TRANSLATION retained_intron ENSMUSG00000022391 Rangap1 ENSMUST00000229705 - NO_TRANSLATION retained_intron ENSMUSG00000022391 Rangap1 ENSMUST00000230287 - NO_TRANSLATION retained_intron ENSMUSG00000022391 Rangap1 ENSMUST00000171115 ENSMUSP00000130046 TRANSLATION protein_coding - CCDS27670.1 1 589.0 0.0 9.845 14.5 275.0 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000022391 Rangap1 ENSMUST00000052374 ENSMUSP00000057771 TRANSLATION protein_coding - CCDS27670.1 1 589.0 0.0 9.845 14.5 275.0 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000022391 Rangap1 ENSMUST00000170134 ENSMUSP00000126849 TRANSLATION protein_coding - CCDS27670.1 1 589.0 0.0 9.845 14.5 275.0 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000022391 Rangap1 ENSMUST00000230302 ENSMUSP00000155198 TRANSLATION protein_coding stop - - 257.0 0.0 4.07 0.0 13.3 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000022391 Rangap1 ENSMUST00000230726 ENSMUSP00000155851 TRANSLATION protein_coding stop - - 144.0 0.0 2.17 0.0 13.3 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000022144 Gdnf ENSMUST00000022744 ENSMUSP00000022744 TRANSLATION protein_coding - CCDS27371.1 1 240.0 0.0 1.0 0.0 45.3 0.0 -1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047728 Ly6g2 ENSMUST00000229521 ENSMUSP00000155184 TRANSLATION protein_coding - - - 134.0 0.0 2.0 0.1 48.1 0.0 4,-1 0.1609 1 8.0 ALTERNATIVE:2 ENSMUSG00000047728 Ly6g2 ENSMUST00000185307 ENSMUSP00000140330 TRANSLATION protein_coding - - 2 134.0 0.0 2.0 0.1 48.1 0.0 4,-1 0.1609 1 8.0 ALTERNATIVE:2 ENSMUSG00000047728 Ly6g2 ENSMUST00000055719 ENSMUSP00000053396 TRANSLATION protein_coding - - 1 124.0 0.0 2.0 0.0 48.1 0.0 4,-1 0.808 1 8.0 PRINCIPAL:2 ENSMUSG00000022206 Npr3 ENSMUST00000226878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022206 Npr3 ENSMUST00000226139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022206 Npr3 ENSMUST00000228489 ENSMUSP00000153895 TRANSLATION protein_coding - - - 281.0 0.0 5.0 2.1 84.2 1.0 -4,-7 0.0574 2 5.166 MINOR ENSMUSG00000022206 Npr3 ENSMUST00000066529 ENSMUSP00000066737 TRANSLATION protein_coding - CCDS27386.1 1 536.0 0.0 5.4375 9.0 175.9 1.0 1,-4 1.0 12 10.628 PRINCIPAL:4 ENSMUSG00000022206 Npr3 ENSMUST00000228603 ENSMUSP00000154180 TRANSLATION protein_coding - - - 535.0 0.0 5.625 9.0 175.9 1.0 1,-4 0.8494 12 11.0 ALTERNATIVE:1 ENSMUSG00000022587 Ly6e ENSMUST00000185861 ENSMUSP00000141145 TRANSLATION protein_coding - - 2 130.0 0.0 1.03 0.0 58.2 0.0 3,-2 0.822 2 12.0 PRINCIPAL:1 ENSMUSG00000022587 Ly6e ENSMUST00000190810 ENSMUSP00000139482 TRANSLATION protein_coding - - 1 130.0 0.0 1.03 0.0 58.2 0.0 3,-2 0.822 2 12.0 PRINCIPAL:1 ENSMUSG00000022587 Ly6e ENSMUST00000187284 ENSMUSP00000140553 TRANSLATION protein_coding - - 5 130.0 0.0 1.03 0.0 58.2 0.0 3,-2 0.822 2 12.0 PRINCIPAL:1 ENSMUSG00000022587 Ly6e ENSMUST00000191439 - NO_TRANSLATION retained_intron ENSMUSG00000022587 Ly6e ENSMUST00000188503 - NO_TRANSLATION retained_intron ENSMUSG00000022587 Ly6e ENSMUST00000191436 ENSMUSP00000139549 TRANSLATION protein_coding - - 1 130.0 0.0 1.03 0.0 58.2 0.0 3,-2 0.822 2 12.0 PRINCIPAL:1 ENSMUSG00000022587 Ly6e ENSMUST00000187606 ENSMUSP00000139471 TRANSLATION protein_coding - - 2 130.0 0.0 1.03 0.0 58.2 0.0 3,-2 0.822 2 12.0 PRINCIPAL:1 ENSMUSG00000022587 Ly6e ENSMUST00000189186 ENSMUSP00000139477 TRANSLATION protein_coding stop - 1 57.0 0.0 0.0 0.0 29.0 0.0 3,-2 0.005 1 -2.0 MINOR ENSMUSG00000022587 Ly6e ENSMUST00000188042 ENSMUSP00000141059 TRANSLATION protein_coding - - 3 130.0 0.0 1.03 0.0 58.2 0.0 3,-2 0.822 2 12.0 PRINCIPAL:1 ENSMUSG00000022587 Ly6e ENSMUST00000191127 ENSMUSP00000139966 TRANSLATION protein_coding - - 3 130.0 0.0 1.03 0.0 58.2 0.0 3,-2 0.822 2 12.0 PRINCIPAL:1 ENSMUSG00000022587 Ly6e ENSMUST00000188866 ENSMUSP00000140145 TRANSLATION protein_coding - - 3 130.0 0.0 1.03 0.0 58.2 0.0 3,-2 0.822 2 12.0 PRINCIPAL:1 ENSMUSG00000022587 Ly6e ENSMUST00000185863 ENSMUSP00000140060 TRANSLATION protein_coding stop - 3 113.0 0.0 0.7 0.0 48.2 0.0 1,-2 0.0111 2 -2.0 MINOR ENSMUSG00000022587 Ly6e ENSMUST00000186927 - NO_TRANSLATION retained_intron ENSMUSG00000022587 Ly6e ENSMUST00000191145 ENSMUSP00000140829 TRANSLATION protein_coding stop - 3 117.0 0.0 0.7 0.0 54.4 0.0 1,-2 0.0355 2 -2.0 MINOR ENSMUSG00000033128 Gga1 ENSMUST00000229353 - NO_TRANSLATION retained_intron ENSMUSG00000033128 Gga1 ENSMUST00000230243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033128 Gga1 ENSMUST00000041587 ENSMUSP00000035992 TRANSLATION protein_coding - CCDS27625.1 1 635.0 5.0 11.4 9.0 313.5 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000033128 Gga1 ENSMUST00000230772 - NO_TRANSLATION retained_intron ENSMUSG00000033128 Gga1 ENSMUST00000230192 ENSMUSP00000155780 TRANSLATION nonsense_mediated_decay - - - 363.0 0.0 8.0 0.0 220.9 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000005124 Ccn4 ENSMUST00000118823 ENSMUSP00000113144 TRANSLATION protein_coding - - 5 153.0 0.0 0.0 1.0 41.0 0.0 2,-2 0.0174 - 0.438 MINOR ENSMUSG00000005124 Ccn4 ENSMUST00000005255 ENSMUSP00000005255 TRANSLATION protein_coding - CCDS27510.1 1 367.0 0.0 1.4 12.3 133.7 0.0 2,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000005124 Ccn4 ENSMUST00000230535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005124 Ccn4 ENSMUST00000229246 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005124 Ccn4 ENSMUST00000133863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005124 Ccn4 ENSMUST00000147079 ENSMUSP00000117402 TRANSLATION nonsense_mediated_decay - - 1 52.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0019 - -2.0 MINOR ENSMUSG00000036966 Spryd3 ENSMUST00000154032 ENSMUSP00000121493 TRANSLATION protein_coding - CCDS49738.1 5 442.0 0.0 5.83 9.9 81.3 0.0 -4,0 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000036966 Spryd3 ENSMUST00000128884 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036966 Spryd3 ENSMUST00000139279 - NO_TRANSLATION retained_intron ENSMUSG00000036966 Spryd3 ENSMUST00000156475 - NO_TRANSLATION retained_intron ENSMUSG00000001289 Pfdn5 ENSMUST00000169637 ENSMUSP00000128263 TRANSLATION protein_coding stop - 5 60.0 0.0 1.83 0.0 60.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001289 Pfdn5 ENSMUST00000170627 ENSMUSP00000131245 TRANSLATION protein_coding - - 5 109.0 0.0 3.41 2.0 66.5 0.0 -4,-5 0.0211 6 7.546 MINOR ENSMUSG00000001289 Pfdn5 ENSMUST00000168805 - NO_TRANSLATION retained_intron ENSMUSG00000001289 Pfdn5 ENSMUST00000062492 ENSMUSP00000126970 TRANSLATION protein_coding - - 3 85.0 0.0 2.66 0.1 65.0 0.0 -4,-5 0.0 6 5.748 MINOR ENSMUSG00000001289 Pfdn5 ENSMUST00000165717 ENSMUSP00000132441 TRANSLATION protein_coding stop - 2 72.0 0.0 2.16 0.0 65.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000001289 Pfdn5 ENSMUST00000166658 ENSMUSP00000129178 TRANSLATION protein_coding - CCDS37227.1 1 154.0 0.0 4.74 20.4 99.9 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000001289 Pfdn5 ENSMUST00000001335 ENSMUSP00000001335 TRANSLATION nonsense_mediated_decay - - 3 73.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000001289 Pfdn5 ENSMUST00000165671 ENSMUSP00000128526 TRANSLATION protein_coding - - 2 85.0 0.0 2.66 0.1 65.0 0.0 -4,-5 0.0 6 5.748 MINOR ENSMUSG00000022312 Eif3h ENSMUST00000228583 - NO_TRANSLATION retained_intron ENSMUSG00000022312 Eif3h ENSMUST00000226756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022312 Eif3h ENSMUST00000228625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022312 Eif3h ENSMUST00000022925 ENSMUSP00000022925 TRANSLATION protein_coding - CCDS27461.1 1 352.0 0.0 7.6 13.0 83.9 0.0 -4,-7 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000091780 Sco2 ENSMUST00000228977 ENSMUSP00000155150 TRANSLATION protein_coding - CCDS49701.1 - 255.0 7.0 1.0 0.0 0.0 1.0 -4,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000091780 Sco2 ENSMUST00000167643 ENSMUSP00000131943 TRANSLATION protein_coding - CCDS49701.1 1 255.0 7.0 1.0 0.0 0.0 1.0 -4,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000045281 Gpr20 ENSMUST00000064166 ENSMUSP00000063910 TRANSLATION protein_coding - CCDS27518.1 1 358.0 0.0 1.0 2.8 107.0 0.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000022570 Gfus ENSMUST00000229668 - NO_TRANSLATION retained_intron ENSMUSG00000022570 Gfus ENSMUST00000229289 ENSMUSP00000154964 TRANSLATION protein_coding - - - 292.0 37.0 8.028 0.0 127.6 0.0 -4,-7 0.0012 9 9.0 MINOR ENSMUSG00000022570 Gfus ENSMUST00000230485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022570 Gfus ENSMUST00000229951 ENSMUSP00000155711 TRANSLATION protein_coding - - - 351.0 35.0 8.406 0.0 133.5 0.0 -4,-7 0.0012 10 8.772 MINOR ENSMUSG00000022570 Gfus ENSMUST00000230364 ENSMUSP00000155636 TRANSLATION nonsense_mediated_decay - - - 128.0 16.0 2.33 0.0 52.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022570 Gfus ENSMUST00000230736 ENSMUSP00000155200 TRANSLATION protein_coding - - - 327.0 34.0 8.326 0.0 135.7 0.0 -4,-7 0.0198 9 8.076 MINOR ENSMUSG00000022570 Gfus ENSMUST00000230884 - NO_TRANSLATION retained_intron ENSMUSG00000022570 Gfus ENSMUST00000230610 ENSMUSP00000155677 TRANSLATION nonsense_mediated_decay - - - 128.0 16.0 2.33 0.0 52.7 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000022570 Gfus ENSMUST00000229085 ENSMUSP00000155151 TRANSLATION nonsense_mediated_decay - - - 62.0 12.0 1.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000022570 Gfus ENSMUST00000229997 - NO_TRANSLATION retained_intron ENSMUSG00000022570 Gfus ENSMUST00000230454 - NO_TRANSLATION retained_intron ENSMUSG00000022570 Gfus ENSMUST00000229641 ENSMUSP00000155139 TRANSLATION protein_coding - CCDS27555.1 - 321.0 41.0 9.16 16.5 195.5 0.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000022570 Gfus ENSMUST00000023231 ENSMUSP00000023231 TRANSLATION protein_coding - CCDS27555.1 1 321.0 41.0 9.16 16.5 195.5 0.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000022570 Gfus ENSMUST00000229786 - NO_TRANSLATION retained_intron ENSMUSG00000016757 Ttll12 ENSMUST00000136066 ENSMUSP00000117161 TRANSLATION nonsense_mediated_decay - - 1 210.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 1 -2.0 MINOR ENSMUSG00000016757 Ttll12 ENSMUST00000134334 - NO_TRANSLATION retained_intron ENSMUSG00000016757 Ttll12 ENSMUST00000016901 ENSMUSP00000016901 TRANSLATION protein_coding - CCDS27706.1 1 639.0 21.0 2.001 3.1 253.7 0.0 -4,-7 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000041708 Mpped1 ENSMUST00000046168 ENSMUSP00000041981 TRANSLATION protein_coding - CCDS37164.1 1 326.0 15.0 7.99 8.0 43.9 0.0 -2,-4 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000041708 Mpped1 ENSMUST00000172398 ENSMUSP00000131333 TRANSLATION protein_coding - - 3 202.0 4.0 2.48 0.0 0.0 0.0 -2,-4 0.0 1 0.0 MINOR ENSMUSG00000041708 Mpped1 ENSMUST00000125739 ENSMUSP00000131463 TRANSLATION protein_coding stop - 3 152.0 10.0 4.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041708 Mpped1 ENSMUST00000109470 ENSMUSP00000105096 TRANSLATION protein_coding - CCDS37164.1 1 326.0 15.0 7.99 8.0 43.9 0.0 -2,-4 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000041708 Mpped1 ENSMUST00000171560 ENSMUSP00000125835 TRANSLATION nonsense_mediated_decay start - 1 154.0 5.0 3.08 0.0 30.3 0.0 -4,-6 0.0003 3 -2.0 MINOR ENSMUSG00000041708 Mpped1 ENSMUST00000172115 ENSMUSP00000132518 TRANSLATION protein_coding - - 3 209.0 4.0 2.66 0.0 0.0 0.0 -2,-4 0.0 1 0.0 MINOR ENSMUSG00000041708 Mpped1 ENSMUST00000109469 ENSMUSP00000105095 TRANSLATION protein_coding stop - 3 32.0 0.0 0.0 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000041708 Mpped1 ENSMUST00000163723 ENSMUSP00000126242 TRANSLATION protein_coding - - 5 168.0 10.0 4.58 0.4 0.0 0.0 -4,-5 0.0079 1 2.664 MINOR ENSMUSG00000041708 Mpped1 ENSMUST00000150489 ENSMUSP00000128786 TRANSLATION protein_coding start/stop - 3 220.0 6.0 3.91 0.0 29.2 0.0 -4,-7 0.0006 3 -2.0 MINOR ENSMUSG00000041708 Mpped1 ENSMUST00000123387 ENSMUSP00000123230 TRANSLATION nonsense_mediated_decay - - 5 163.0 3.0 2.66 0.1 0.0 0.0 -2,-4 0.001 1 -2.0 MINOR ENSMUSG00000041708 Mpped1 ENSMUST00000148868 ENSMUSP00000131679 TRANSLATION protein_coding stop - 3 203.0 9.0 4.08 0.0 24.7 0.0 -4,-7 0.0004 1 -2.0 MINOR ENSMUSG00000051518 Rps19bp1 ENSMUST00000230189 ENSMUSP00000155546 TRANSLATION nonsense_mediated_decay start - - 64.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000051518 Rps19bp1 ENSMUST00000229962 - NO_TRANSLATION retained_intron ENSMUSG00000051518 Rps19bp1 ENSMUST00000052499 ENSMUSP00000061167 TRANSLATION protein_coding - CCDS27662.1 1 143.0 0.0 1.13 12.9 131.7 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000063661 Krt73 ENSMUST00000063292 ENSMUSP00000065349 TRANSLATION protein_coding - CCDS27864.1 1 539.0 0.0 4.85 9.8 420.6 0.0 -4,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000022438 Parvb ENSMUST00000131158 - NO_TRANSLATION retained_intron ENSMUSG00000022438 Parvb ENSMUST00000146020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022438 Parvb ENSMUST00000122818 ENSMUSP00000117594 TRANSLATION nonsense_mediated_decay - - 3 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022438 Parvb ENSMUST00000023072 ENSMUSP00000023072 TRANSLATION protein_coding - CCDS37167.1 1 365.0 0.0 4.264 20.0 115.0 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000023041 Krt6b ENSMUST00000023786 ENSMUSP00000023786 TRANSLATION protein_coding - CCDS27859.1 1 554.0 0.0 4.75 0.1 503.1 0.0 -4,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000022255 Mtdh ENSMUST00000170050 ENSMUSP00000128288 TRANSLATION protein_coding start/stop - 5 382.0 0.0 0.6 0.0 303.7 0.0 -4,-5 0.0203 11 -2.0 MINOR ENSMUSG00000022255 Mtdh ENSMUST00000168991 ENSMUSP00000129500 TRANSLATION nonsense_mediated_decay - - 5 164.0 0.0 0.0 0.0 178.5 1.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000022255 Mtdh ENSMUST00000172082 - NO_TRANSLATION retained_intron ENSMUSG00000022255 Mtdh ENSMUST00000163697 - NO_TRANSLATION retained_intron ENSMUSG00000022255 Mtdh ENSMUST00000170553 ENSMUSP00000126167 TRANSLATION protein_coding start/stop - 5 220.0 0.0 0.0 0.0 154.2 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000022255 Mtdh ENSMUST00000226992 ENSMUSP00000154553 TRANSLATION nonsense_mediated_decay start - - 91.0 0.0 0.6 0.0 44.6 0.0 -4,-5 0.0225 1 -2.0 MINOR ENSMUSG00000022255 Mtdh ENSMUST00000163333 ENSMUSP00000130190 TRANSLATION protein_coding start - 5 393.0 0.0 0.6 0.0 283.4 0.0 -4,-5 0.0219 16 -2.0 MINOR ENSMUSG00000022255 Mtdh ENSMUST00000226331 - NO_TRANSLATION retained_intron ENSMUSG00000022255 Mtdh ENSMUST00000169905 ENSMUSP00000131814 TRANSLATION protein_coding start/stop - 5 356.0 0.0 0.6 0.0 139.6 0.0 -4,-6 0.0239 16 -2.0 MINOR ENSMUSG00000022255 Mtdh ENSMUST00000171711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022255 Mtdh ENSMUST00000172083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022255 Mtdh ENSMUST00000022865 ENSMUSP00000022865 TRANSLATION protein_coding - CCDS27415.1 1 579.0 0.0 0.6 7.8 470.6 1.0 -4,-6 1.0 22 14.0 PRINCIPAL:1 ENSMUSG00000090129 Or10ad1 ENSMUST00000170618 ENSMUSP00000129271 TRANSLATION protein_coding - CCDS49720.1 2 322.0 0.0 1.0 3.4 169.2 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000090129 Or10ad1 ENSMUST00000206224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090129 Or10ad1 ENSMUST00000145768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090129 Or10ad1 ENSMUST00000155603 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090129 Or10ad1 ENSMUST00000132068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022614 Lmf2 ENSMUST00000229111 ENSMUSP00000155618 TRANSLATION protein_coding stop - - 81.0 0.0 0.6 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000022614 Lmf2 ENSMUST00000230523 - NO_TRANSLATION retained_intron ENSMUSG00000022614 Lmf2 ENSMUST00000023283 ENSMUSP00000023283 TRANSLATION protein_coding - CCDS27746.1 1 702.0 0.0 5.194 6.0 548.8 0.0 -3,-4 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000022614 Lmf2 ENSMUST00000231067 - NO_TRANSLATION retained_intron ENSMUSG00000022614 Lmf2 ENSMUST00000229291 - NO_TRANSLATION retained_intron ENSMUSG00000022614 Lmf2 ENSMUST00000229436 - NO_TRANSLATION retained_intron ENSMUSG00000022614 Lmf2 ENSMUST00000230112 - NO_TRANSLATION retained_intron ENSMUSG00000022614 Lmf2 ENSMUST00000229308 - NO_TRANSLATION retained_intron ENSMUSG00000022614 Lmf2 ENSMUST00000231107 - NO_TRANSLATION retained_intron ENSMUSG00000050982 Apol10a ENSMUST00000060551 ENSMUSP00000060650 TRANSLATION protein_coding - CCDS27601.1 1 318.0 0.0 0.4 0.0 202.2 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000022485 Hoxc5 ENSMUST00000174869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022485 Hoxc5 ENSMUST00000001709 ENSMUSP00000001709 TRANSLATION protein_coding - CCDS27896.1 1 222.0 0.0 1.0 12.3 75.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000055737 Ghr ENSMUST00000162993 - NO_TRANSLATION retained_intron ENSMUSG00000055737 Ghr ENSMUST00000160343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055737 Ghr ENSMUST00000161770 ENSMUSP00000125044 TRANSLATION protein_coding stop - 3 183.0 0.0 1.95 0.0 41.6 0.0 1,-2 0.0012 2 -2.0 MINOR ENSMUSG00000055737 Ghr ENSMUST00000159912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055737 Ghr ENSMUST00000159508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055737 Ghr ENSMUST00000161180 - NO_TRANSLATION retained_intron ENSMUSG00000055737 Ghr ENSMUST00000110697 ENSMUSP00000106325 TRANSLATION protein_coding - CCDS37024.1 5 297.0 0.0 3.95 0.0 41.6 0.0 1,-2 0.0423 5 4.002 MINOR ENSMUSG00000055737 Ghr ENSMUST00000110698 ENSMUSP00000106326 TRANSLATION protein_coding - CCDS37024.1 1 297.0 0.0 3.95 0.0 41.6 0.0 1,-2 0.0423 5 4.002 MINOR ENSMUSG00000055737 Ghr ENSMUST00000161561 ENSMUSP00000124064 TRANSLATION protein_coding - CCDS27358.1 1 650.0 0.0 4.95 0.0 474.9 1.0 1,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000055737 Ghr ENSMUST00000069451 ENSMUSP00000069457 TRANSLATION protein_coding - CCDS27358.1 1 650.0 0.0 4.95 0.0 474.9 1.0 1,-2 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000022620 Arsa ENSMUST00000165199 ENSMUSP00000127646 TRANSLATION protein_coding - CCDS27753.1 1 506.0 10.0 8.25 3.3 350.6 0.0 3,-2 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000022620 Arsa ENSMUST00000168270 ENSMUSP00000130574 TRANSLATION protein_coding start - 3 103.0 0.0 2.5 0.0 28.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000022620 Arsa ENSMUST00000168052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022620 Arsa ENSMUST00000023292 - NO_TRANSLATION retained_intron ENSMUSG00000041815 Poldip3 ENSMUST00000100375 ENSMUSP00000097944 TRANSLATION protein_coding - CCDS84183.1 1 391.0 3.0 2.5 4.3 39.3 0.0 -4,-5 0.4674 6 15.999 MINOR ENSMUSG00000041815 Poldip3 ENSMUST00000149802 - NO_TRANSLATION retained_intron ENSMUSG00000041815 Poldip3 ENSMUST00000150926 - NO_TRANSLATION retained_intron ENSMUSG00000041815 Poldip3 ENSMUST00000129372 ENSMUSP00000120859 TRANSLATION protein_coding stop - 2 202.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000041815 Poldip3 ENSMUST00000058793 ENSMUSP00000054548 TRANSLATION protein_coding - CCDS27697.1 1 420.0 3.0 2.5 10.9 39.3 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000041815 Poldip3 ENSMUST00000135013 - NO_TRANSLATION retained_intron ENSMUSG00000036944 Tmem71 ENSMUST00000048372 ENSMUSP00000044493 TRANSLATION protein_coding - CCDS37090.1 1 287.0 0.0 0.0 2.5 268.7 0.0 -4,-5 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000022315 Slc30a8 ENSMUST00000037240 ENSMUSP00000035257 TRANSLATION protein_coding - CCDS27464.1 1 367.0 0.0 5.3 10.0 152.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022442 Ttll1 ENSMUST00000016897 ENSMUSP00000016897 TRANSLATION protein_coding - CCDS27702.1 1 423.0 19.0 3.8 32.1 378.6 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000022442 Ttll1 ENSMUST00000109479 ENSMUSP00000105105 TRANSLATION protein_coding - - 1 297.0 14.0 2.85 0.0 276.0 0.0 -4,-5 0.0 3 6.762 MINOR ENSMUSG00000022442 Ttll1 ENSMUST00000109480 ENSMUSP00000105106 TRANSLATION protein_coding - CCDS27702.1 5 423.0 19.0 3.8 32.1 378.6 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000022442 Ttll1 ENSMUST00000154401 ENSMUSP00000117790 TRANSLATION protein_coding stop - 3 89.0 1.0 0.6 0.0 27.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000001280 Sp1 ENSMUST00000170884 ENSMUSP00000129638 TRANSLATION protein_coding stop - 1 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000001280 Sp1 ENSMUST00000163709 ENSMUSP00000130747 TRANSLATION protein_coding - - 1 467.0 12.0 1.9 0.0 66.4 0.0 -4,-5 0.0287 4 18.0 MINOR ENSMUSG00000001280 Sp1 ENSMUST00000001326 ENSMUSP00000001326 TRANSLATION protein_coding - CCDS37229.1 1 781.0 12.0 1.9 7.3 66.4 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000001280 Sp1 ENSMUST00000165837 ENSMUSP00000126143 TRANSLATION protein_coding stop - 3 183.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001280 Sp1 ENSMUST00000169619 ENSMUSP00000127714 TRANSLATION protein_coding stop - 1 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000001280 Sp1 ENSMUST00000168802 ENSMUSP00000127445 TRANSLATION protein_coding stop - 1 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000018865 Sult4a1 ENSMUST00000082365 ENSMUSP00000080973 TRANSLATION protein_coding - CCDS27708.1 1 284.0 18.0 6.15 31.2 197.8 0.0 -4,-5 1.0 9 21.334 PRINCIPAL:1 ENSMUSG00000018865 Sult4a1 ENSMUST00000229826 ENSMUSP00000155695 TRANSLATION protein_coding - - - 280.0 19.0 5.35 0.4 176.9 0.0 -4,-5 0.0228 8 15.144 MINOR ENSMUSG00000051864 Tbc1d22a ENSMUST00000229242 ENSMUSP00000155727 TRANSLATION protein_coding start/stop - - 245.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000051864 Tbc1d22a ENSMUST00000063414 ENSMUSP00000065721 TRANSLATION protein_coding - CCDS27729.1 1 516.0 0.0 8.93 9.0 163.9 0.0 -4,-7 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000023025 Larp4 ENSMUST00000100206 ENSMUSP00000097780 TRANSLATION protein_coding - CCDS37208.1 1 719.0 0.0 4.75 9.2 62.5 0.0 -4,-5 1.0 15 11.0 PRINCIPAL:4 ENSMUSG00000023025 Larp4 ENSMUST00000229891 - NO_TRANSLATION retained_intron ENSMUSG00000023025 Larp4 ENSMUST00000057632 ENSMUSP00000086964 TRANSLATION protein_coding - CCDS49730.1 1 718.0 0.0 4.75 9.2 62.5 0.0 -4,-5 0.9996 15 11.0 ALTERNATIVE:1 ENSMUSG00000023025 Larp4 ENSMUST00000229553 - NO_TRANSLATION retained_intron ENSMUSG00000023025 Larp4 ENSMUST00000230521 ENSMUSP00000155529 TRANSLATION nonsense_mediated_decay - - - 107.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023025 Larp4 ENSMUST00000231160 ENSMUSP00000155661 TRANSLATION protein_coding - - - 660.0 0.0 4.75 4.5 62.5 0.0 -4,-5 0.5307 15 9.281 MINOR ENSMUSG00000023025 Larp4 ENSMUST00000230956 ENSMUSP00000155601 TRANSLATION protein_coding - - - 610.0 0.0 4.75 0.0 62.5 0.0 -4,-5 0.027 13 8.0 MINOR ENSMUSG00000023025 Larp4 ENSMUST00000231128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023025 Larp4 ENSMUST00000229426 - NO_TRANSLATION retained_intron ENSMUSG00000001661 Hoxc6 ENSMUST00000001711 ENSMUSP00000001711 TRANSLATION protein_coding - CCDS27895.1 1 235.0 0.0 1.0 13.0 73.3 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000001661 Hoxc6 ENSMUST00000173210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001661 Hoxc6 ENSMUST00000173421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022307 Oxr1 ENSMUST00000229511 ENSMUSP00000155004 TRANSLATION protein_coding stop - - 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000022918 ENSMUSP00000022918 TRANSLATION protein_coding - CCDS27448.1 1 778.0 0.0 5.58 2.0 170.2 0.0 -4,-5 0.5367 27 8.296 ALTERNATIVE:2 ENSMUSG00000022307 Oxr1 ENSMUST00000230126 - NO_TRANSLATION retained_intron ENSMUSG00000022307 Oxr1 ENSMUST00000229836 ENSMUSP00000155473 TRANSLATION protein_coding stop - - 106.0 0.0 1.4 0.0 35.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000090095 ENSMUSP00000087553 TRANSLATION protein_coding - CCDS49600.1 1 751.0 0.0 5.58 0.8 170.2 0.0 -4,-5 0.5874 24 8.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000230778 ENSMUSP00000155161 TRANSLATION protein_coding - - - 574.0 0.0 0.9 0.0 35.7 0.0 -4,-5 0.0384 19 1.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000230127 ENSMUSP00000155043 TRANSLATION protein_coding stop - - 109.0 0.0 1.6 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000231215 ENSMUSP00000155381 TRANSLATION nonsense_mediated_decay - - - 77.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000090096 ENSMUSP00000087554 TRANSLATION protein_coding - CCDS49600.1 5 751.0 0.0 5.58 0.8 170.2 0.0 -4,-5 0.5874 24 8.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000170127 ENSMUSP00000126266 TRANSLATION protein_coding - CCDS49599.1 1 832.0 0.0 5.58 1.2 170.2 0.0 -4,-7 0.5534 25 8.06 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000229769 ENSMUSP00000155630 TRANSLATION protein_coding stop - - 399.0 0.0 0.9 0.0 35.7 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000230203 ENSMUSP00000155237 TRANSLATION protein_coding - - - 839.0 0.0 5.58 0.0 170.2 0.0 -4,-6 0.1433 28 8.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000166917 ENSMUSP00000130456 TRANSLATION protein_coding - CCDS49601.1 2 216.0 0.0 4.68 14.5 134.5 0.0 -4,-7 1.0 5 9.2 PRINCIPAL:2 ENSMUSG00000022307 Oxr1 ENSMUST00000179393 ENSMUSP00000136923 TRANSLATION protein_coding - CCDS49600.1 1 751.0 0.0 5.58 0.8 170.2 0.0 -4,-5 0.5874 24 8.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000110297 ENSMUSP00000105926 TRANSLATION protein_coding - CCDS49598.1 1 866.0 0.0 5.58 0.8 170.2 0.0 -4,-6 0.6362 31 8.0 MINOR ENSMUSG00000022307 Oxr1 ENSMUST00000230131 ENSMUSP00000155424 TRANSLATION protein_coding stop - - 198.0 0.0 3.68 0.0 78.7 0.0 -4,-2 0.0005 7 -2.0 MINOR ENSMUSG00000009733 Tfcp2 ENSMUST00000230039 - NO_TRANSLATION retained_intron ENSMUSG00000009733 Tfcp2 ENSMUST00000229581 ENSMUSP00000155581 TRANSLATION protein_coding - - - 505.0 0.0 2.16 0.0 191.4 0.0 -4,-7 0.1372 9 12.0 MINOR ENSMUSG00000009733 Tfcp2 ENSMUST00000231174 ENSMUSP00000155598 TRANSLATION protein_coding start - - 153.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000009733 Tfcp2 ENSMUST00000229696 ENSMUSP00000155683 TRANSLATION protein_coding - CCDS27840.1 - 502.0 0.0 2.16 22.3 191.4 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000009733 Tfcp2 ENSMUST00000229265 ENSMUSP00000155770 TRANSLATION protein_coding stop - - 41.0 0.0 0.0 0.0 33.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009733 Tfcp2 ENSMUST00000009877 ENSMUSP00000009877 TRANSLATION protein_coding - - 1 500.0 0.0 2.16 9.4 191.4 0.0 -4,-7 0.6659 8 13.576 MINOR ENSMUSG00000009733 Tfcp2 ENSMUST00000230363 - NO_TRANSLATION retained_intron ENSMUSG00000009733 Tfcp2 ENSMUST00000231138 ENSMUSP00000155196 TRANSLATION protein_coding stop - - 40.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000009733 Tfcp2 ENSMUST00000230254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047003 Zfp41 ENSMUST00000161555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047003 Zfp41 ENSMUST00000161785 ENSMUSP00000124626 TRANSLATION protein_coding - CCDS37108.1 1 198.0 16.0 1.8 3.9 86.9 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000047003 Zfp41 ENSMUST00000161752 ENSMUSP00000124887 TRANSLATION protein_coding stop - 3 148.0 9.0 0.8 0.0 45.1 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000047003 Zfp41 ENSMUST00000054555 ENSMUSP00000056510 TRANSLATION protein_coding - CCDS37108.1 1 198.0 16.0 1.8 3.9 86.9 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000022195 6030458C11Rik ENSMUST00000227821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022195 6030458C11Rik ENSMUST00000227299 ENSMUSP00000154605 TRANSLATION protein_coding - - - 358.0 0.0 0.0 3.1 113.5 0.0 -2,-5 0.0718 5 0.84 MINOR ENSMUSG00000022195 6030458C11Rik ENSMUST00000057256 ENSMUSP00000055656 TRANSLATION protein_coding - CCDS27392.1 1 442.0 4.0 0.0 8.5 224.1 0.0 -4,-7 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000022195 6030458C11Rik ENSMUST00000228177 ENSMUSP00000154147 TRANSLATION protein_coding - - - 341.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0015 4 0.0 MINOR ENSMUSG00000022195 6030458C11Rik ENSMUST00000228888 - NO_TRANSLATION retained_intron ENSMUSG00000071757 Zhx2 ENSMUST00000160990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071757 Zhx2 ENSMUST00000096430 ENSMUSP00000094164 TRANSLATION protein_coding - CCDS27483.1 1 836.0 9.0 0.0 9.0 79.0 0.0 -4,-7 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000041852 Tcf20 ENSMUST00000229439 ENSMUSP00000155508 TRANSLATION protein_coding stop - - 39.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0009 1 -2.0 MINOR ENSMUSG00000041852 Tcf20 ENSMUST00000229547 ENSMUSP00000154966 TRANSLATION protein_coding stop - - 152.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 5 -2.0 MINOR ENSMUSG00000041852 Tcf20 ENSMUST00000109510 ENSMUSP00000105136 TRANSLATION protein_coding - CCDS49681.1 1 1987.0 7.0 0.74 0.4 32.7 0.0 -4,-7 0.6353 25 14.0 ALTERNATIVE:2 ENSMUSG00000041852 Tcf20 ENSMUST00000230403 ENSMUSP00000155055 TRANSLATION protein_coding stop - - 113.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 5 -2.0 MINOR ENSMUSG00000041852 Tcf20 ENSMUST00000048966 ENSMUSP00000048486 TRANSLATION protein_coding - CCDS27693.1 1 1965.0 7.0 0.74 0.4 32.7 0.0 -4,-7 1.0 25 14.0 PRINCIPAL:2 ENSMUSG00000044250 Pced1b ENSMUST00000226495 ENSMUSP00000154203 TRANSLATION protein_coding stop - - 89.0 0.0 1.0 0.0 27.7 0.0 -4,-7 0.0245 1 -2.0 MINOR ENSMUSG00000044250 Pced1b ENSMUST00000226615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044250 Pced1b ENSMUST00000059433 ENSMUSP00000055485 TRANSLATION protein_coding - CCDS27781.1 1 433.0 0.0 1.6 0.4 27.7 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000044250 Pced1b ENSMUST00000228521 ENSMUSP00000154814 TRANSLATION protein_coding - CCDS27781.1 - 433.0 0.0 1.6 0.4 27.7 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000063727 Tnfrsf11b ENSMUST00000079772 ENSMUSP00000078705 TRANSLATION protein_coding - CCDS27468.1 1 401.0 3.0 2.066 18.0 115.3 0.0 2,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000095440 Fignl2 ENSMUST00000178140 ENSMUSP00000137256 TRANSLATION protein_coding - CCDS57012.1 - 644.0 12.0 0.2 0.1 69.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095440 Fignl2 ENSMUST00000213610 ENSMUSP00000150618 TRANSLATION protein_coding - CCDS57012.1 5 644.0 12.0 0.2 0.1 69.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000053508 Gtsf2 ENSMUST00000065978 ENSMUSP00000068158 TRANSLATION protein_coding - CCDS37235.1 1 154.0 8.0 2.0 3.3 72.5 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000053508 Gtsf2 ENSMUST00000229158 ENSMUSP00000154981 TRANSLATION nonsense_mediated_decay - - - 83.0 5.0 1.0 0.0 45.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022617 Chkb ENSMUST00000112664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022617 Chkb ENSMUST00000166267 - NO_TRANSLATION retained_intron ENSMUSG00000022617 Chkb ENSMUST00000115278 - NO_TRANSLATION retained_intron ENSMUSG00000022617 Chkb ENSMUST00000170460 ENSMUSP00000128026 TRANSLATION protein_coding start/stop - 3 176.0 17.0 5.18 0.0 211.3 0.0 -3,-6 0.0034 4 -2.0 MINOR ENSMUSG00000022617 Chkb ENSMUST00000165623 - NO_TRANSLATION retained_intron ENSMUSG00000022617 Chkb ENSMUST00000171666 ENSMUSP00000127191 TRANSLATION nonsense_mediated_decay start - 3 164.0 12.0 4.9 0.0 162.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000022617 Chkb ENSMUST00000023289 ENSMUSP00000023289 TRANSLATION protein_coding - CCDS27750.1 1 394.0 26.0 10.53 4.0 247.3 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000022617 Chkb ENSMUST00000171140 - NO_TRANSLATION retained_intron ENSMUSG00000022617 Chkb ENSMUST00000170334 - NO_TRANSLATION retained_intron ENSMUSG00000022309 Angpt1 ENSMUST00000227738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022309 Angpt1 ENSMUST00000022921 ENSMUSP00000022921 TRANSLATION protein_coding - CCDS27450.1 1 498.0 9.0 5.41 22.0 234.9 0.0 1,-2 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000001657 Hoxc8 ENSMUST00000189484 - NO_TRANSLATION retained_intron ENSMUSG00000001657 Hoxc8 ENSMUST00000001703 ENSMUSP00000001703 TRANSLATION protein_coding - CCDS27894.1 1 242.0 0.0 1.0 14.2 75.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000018126 Baiap2l2 ENSMUST00000170254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018126 Baiap2l2 ENSMUST00000167970 - NO_TRANSLATION retained_intron ENSMUSG00000018126 Baiap2l2 ENSMUST00000170955 ENSMUSP00000125946 TRANSLATION protein_coding - - 1 238.0 0.0 5.5 0.0 267.4 0.0 -4,-5 0.0011 3 5.34 MINOR ENSMUSG00000018126 Baiap2l2 ENSMUST00000169462 - NO_TRANSLATION retained_intron ENSMUSG00000018126 Baiap2l2 ENSMUST00000165408 ENSMUSP00000127816 TRANSLATION protein_coding - CCDS37140.1 1 522.0 0.0 6.9 2.5 331.7 0.0 -4,-5 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000018868 Pnpla5 ENSMUST00000230566 ENSMUSP00000155268 TRANSLATION protein_coding - - - 433.0 0.0 2.75 0.3 44.8 0.0 -4,-5 0.3262 - 6.0 ALTERNATIVE:2 ENSMUSG00000018868 Pnpla5 ENSMUST00000019012 ENSMUSP00000019012 TRANSLATION protein_coding - CCDS49685.1 1 432.0 0.0 2.75 0.0 44.8 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000022471 Xrcc6 ENSMUST00000164920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022471 Xrcc6 ENSMUST00000166311 - NO_TRANSLATION retained_intron ENSMUSG00000022471 Xrcc6 ENSMUST00000168581 ENSMUSP00000129628 TRANSLATION protein_coding stop - 5 27.0 0.0 0.75 0.0 25.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022471 Xrcc6 ENSMUST00000170630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022471 Xrcc6 ENSMUST00000164975 - NO_TRANSLATION retained_intron ENSMUSG00000022471 Xrcc6 ENSMUST00000164779 ENSMUSP00000127927 TRANSLATION protein_coding stop - 3 97.0 0.0 2.08 0.0 96.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022471 Xrcc6 ENSMUST00000230729 ENSMUSP00000155606 TRANSLATION protein_coding - - - 263.0 0.0 6.0 1.0 233.7 0.0 -4,-7 0.0075 5 0.0 MINOR ENSMUSG00000022471 Xrcc6 ENSMUST00000164775 - NO_TRANSLATION retained_intron ENSMUSG00000022471 Xrcc6 ENSMUST00000165777 ENSMUSP00000131212 TRANSLATION protein_coding stop - 5 106.0 0.0 2.0 0.0 85.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022471 Xrcc6 ENSMUST00000100399 ENSMUSP00000097968 TRANSLATION protein_coding - CCDS37153.1 1 608.0 0.0 12.83 24.0 559.8 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000022471 Xrcc6 ENSMUST00000170907 - NO_TRANSLATION retained_intron ENSMUSG00000022471 Xrcc6 ENSMUST00000069530 ENSMUSP00000068559 TRANSLATION protein_coding - CCDS37153.1 1 608.0 0.0 12.83 24.0 559.8 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000016664 Pacsin2 ENSMUST00000231043 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016664 Pacsin2 ENSMUST00000230030 ENSMUSP00000155333 TRANSLATION protein_coding start - - 272.0 0.0 4.43 0.0 59.3 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000016664 Pacsin2 ENSMUST00000229337 ENSMUSP00000155845 TRANSLATION protein_coding stop - - 124.0 6.0 2.45 0.0 63.2 0.0 -4,-5 0.0005 6 -2.0 MINOR ENSMUSG00000016664 Pacsin2 ENSMUST00000231184 ENSMUSP00000155334 TRANSLATION protein_coding - CCDS27701.1 - 486.0 6.0 8.38 21.2 122.5 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000016664 Pacsin2 ENSMUST00000230816 ENSMUSP00000155068 TRANSLATION protein_coding stop - - 191.0 6.0 4.45 0.0 63.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000016664 Pacsin2 ENSMUST00000165095 ENSMUSP00000130098 TRANSLATION protein_coding - CCDS27701.1 1 486.0 6.0 8.38 21.2 122.5 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000016664 Pacsin2 ENSMUST00000171436 ENSMUSP00000131504 TRANSLATION protein_coding - CCDS27701.1 5 486.0 6.0 8.38 21.2 122.5 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000016664 Pacsin2 ENSMUST00000230679 ENSMUSP00000155481 TRANSLATION protein_coding - CCDS27701.1 - 486.0 6.0 8.38 21.2 122.5 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000016664 Pacsin2 ENSMUST00000230960 - NO_TRANSLATION retained_intron ENSMUSG00000016664 Pacsin2 ENSMUST00000231946 ENSMUSP00000155925 TRANSLATION protein_coding start - - 180.0 0.0 2.6 0.0 59.3 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000047878 A4galt ENSMUST00000229454 - NO_TRANSLATION retained_intron ENSMUSG00000047878 A4galt ENSMUST00000049530 ENSMUSP00000057999 TRANSLATION protein_coding - CCDS27699.1 1 359.0 0.0 1.0 0.1 249.5 1.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000047878 A4galt ENSMUST00000164614 ENSMUSP00000129719 TRANSLATION protein_coding - CCDS27699.1 1 359.0 0.0 1.0 0.1 249.5 1.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000047878 A4galt ENSMUST00000229687 ENSMUSP00000155672 TRANSLATION protein_coding stop - - 82.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000068105 Tnfrsf13c ENSMUST00000089161 ENSMUSP00000086564 TRANSLATION protein_coding - CCDS27684.1 1 175.0 0.0 0.75 0.0 65.5 2.0 -4,-1 0.4175 1 8.0 ALTERNATIVE:2 ENSMUSG00000068105 Tnfrsf13c ENSMUST00000231049 ENSMUSP00000154899 TRANSLATION protein_coding - - - 164.0 0.0 0.75 0.0 65.5 2.0 -4,-1 0.1056 1 8.0 ALTERNATIVE:2 ENSMUSG00000068105 Tnfrsf13c ENSMUST00000109535 ENSMUSP00000105161 TRANSLATION protein_coding - - 1 200.0 0.0 0.75 0.0 65.5 2.0 -4,-1 0.7291 1 8.0 PRINCIPAL:2 ENSMUSG00000068105 Tnfrsf13c ENSMUST00000229984 ENSMUSP00000155840 TRANSLATION nonsense_mediated_decay start - - 45.0 0.0 0.45 0.0 25.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000033020 Polr2f ENSMUST00000230271 ENSMUSP00000155332 TRANSLATION protein_coding - CCDS27634.1 - 127.0 0.0 3.83 34.9 57.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000033020 Polr2f ENSMUST00000040077 ENSMUSP00000043566 TRANSLATION protein_coding - - 1 112.0 0.0 3.33 0.0 0.0 0.0 -4,-5 0.0003 - 4.998 MINOR ENSMUSG00000033020 Polr2f ENSMUST00000229973 ENSMUSP00000155409 TRANSLATION nonsense_mediated_decay - - - 98.0 0.0 3.08 0.0 50.1 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000033020 Polr2f ENSMUST00000229762 - NO_TRANSLATION retained_intron ENSMUSG00000033020 Polr2f ENSMUST00000229978 - NO_TRANSLATION retained_intron ENSMUSG00000022383 Ppara ENSMUST00000109422 ENSMUSP00000105049 TRANSLATION protein_coding - CCDS27721.1 1 468.0 8.0 4.8 17.6 147.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000022383 Ppara ENSMUST00000136453 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022383 Ppara ENSMUST00000109423 ENSMUSP00000105050 TRANSLATION protein_coding - CCDS27721.1 1 468.0 8.0 4.8 17.6 147.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000022383 Ppara ENSMUST00000138813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022383 Ppara ENSMUST00000057979 ENSMUSP00000059719 TRANSLATION protein_coding - CCDS27721.1 1 468.0 8.0 4.8 17.6 147.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000022383 Ppara ENSMUST00000134880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033728 Lrrc14 ENSMUST00000137649 ENSMUSP00000121982 TRANSLATION protein_coding - CCDS27589.1 1 493.0 0.0 2.409 9.4 13.1 0.0 -2,0 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000033728 Lrrc14 ENSMUST00000036423 ENSMUSP00000049466 TRANSLATION protein_coding - CCDS27589.1 1 493.0 0.0 2.409 9.4 13.1 0.0 -2,0 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000033728 Lrrc14 ENSMUST00000138132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033728 Lrrc14 ENSMUST00000142610 ENSMUSP00000117780 TRANSLATION nonsense_mediated_decay - - 1 111.0 0.0 0.664 0.0 0.0 0.0 -2,0 0.0007 2 -2.0 MINOR ENSMUSG00000033728 Lrrc14 ENSMUST00000142506 - NO_TRANSLATION retained_intron ENSMUSG00000033728 Lrrc14 ENSMUST00000127208 ENSMUSP00000114921 TRANSLATION protein_coding - CCDS27589.1 1 493.0 0.0 2.409 9.4 13.1 0.0 -2,0 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000033728 Lrrc14 ENSMUST00000154531 - NO_TRANSLATION retained_intron ENSMUSG00000033728 Lrrc14 ENSMUST00000136840 ENSMUSP00000119670 TRANSLATION protein_coding stop - 3 166.0 0.0 0.829 0.0 0.0 0.0 -2,0 0.0007 3 -2.0 MINOR ENSMUSG00000033728 Lrrc14 ENSMUST00000155735 ENSMUSP00000115446 TRANSLATION protein_coding - CCDS27589.1 5 493.0 0.0 2.409 9.4 13.1 0.0 -2,0 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000033728 Lrrc14 ENSMUST00000155225 ENSMUSP00000122845 TRANSLATION protein_coding stop - 3 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000109179 Wdr97 ENSMUST00000208833 ENSMUSP00000146420 TRANSLATION protein_coding - - 5 1664.0 0.0 0.6 0.0 36.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000118671 Eppk1 ENSMUST00000239552 ENSMUSP00000159440 TRANSLATION protein_coding - - - 3458.0 0.0 0.2 0.0 1072.8 0.0 -4,-7 1.0 80 12.0 PRINCIPAL:1 ENSMUSG00000022437 Samm50 ENSMUST00000230498 - NO_TRANSLATION retained_intron ENSMUSG00000022437 Samm50 ENSMUST00000230830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022437 Samm50 ENSMUST00000230659 - NO_TRANSLATION retained_intron ENSMUSG00000022437 Samm50 ENSMUST00000023071 ENSMUSP00000023071 TRANSLATION protein_coding - CCDS37166.1 1 469.0 0.0 11.25 29.2 219.3 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000022437 Samm50 ENSMUST00000229751 - NO_TRANSLATION retained_intron ENSMUSG00000022437 Samm50 ENSMUST00000230668 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022437 Samm50 ENSMUST00000229608 - NO_TRANSLATION retained_intron ENSMUSG00000075402 Krt76 ENSMUST00000100179 ENSMUSP00000097754 TRANSLATION protein_coding - CCDS27866.1 1 594.0 0.0 4.85 0.0 502.3 0.0 -4,0 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000016758 Bik ENSMUST00000230912 ENSMUSP00000155083 TRANSLATION protein_coding - CCDS27703.1 - 150.0 0.0 0.0 0.1 229.8 1.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000016758 Bik ENSMUST00000229165 ENSMUSP00000155439 TRANSLATION protein_coding stop - - 143.0 0.0 0.0 0.0 219.6 0.0 -4,-5 0.0263 - -2.0 MINOR ENSMUSG00000016758 Bik ENSMUST00000016902 ENSMUSP00000016902 TRANSLATION protein_coding - CCDS27703.1 1 150.0 0.0 0.0 0.1 229.8 1.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000016758 Bik ENSMUST00000229964 ENSMUSP00000155777 TRANSLATION protein_coding - - - 106.0 0.0 0.0 0.0 174.7 1.0 -4,-7 0.006 - 2.694 MINOR ENSMUSG00000037353 Letmd1 ENSMUST00000229372 - NO_TRANSLATION retained_intron ENSMUSG00000037353 Letmd1 ENSMUST00000229648 ENSMUSP00000155084 TRANSLATION protein_coding - - - 271.0 0.0 6.5 2.8 225.7 1.0 -4,-7 0.1726 9 12.045 MINOR ENSMUSG00000037353 Letmd1 ENSMUST00000231001 - NO_TRANSLATION retained_intron ENSMUSG00000037353 Letmd1 ENSMUST00000229012 ENSMUSP00000155243 TRANSLATION nonsense_mediated_decay - - - 123.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0 2 -2.0 MINOR ENSMUSG00000037353 Letmd1 ENSMUST00000229457 - NO_TRANSLATION retained_intron ENSMUSG00000037353 Letmd1 ENSMUST00000037001 ENSMUSP00000037546 TRANSLATION protein_coding - CCDS27838.1 1 360.0 0.0 6.5 9.6 235.4 1.0 -2,2 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000037353 Letmd1 ENSMUST00000230339 - NO_TRANSLATION retained_intron ENSMUSG00000037353 Letmd1 ENSMUST00000230294 ENSMUSP00000155807 TRANSLATION protein_coding - - - 203.0 0.0 4.75 4.1 153.4 0.0 -4,-2 0.1119 8 4.662 MINOR ENSMUSG00000037353 Letmd1 ENSMUST00000230579 - NO_TRANSLATION retained_intron ENSMUSG00000037353 Letmd1 ENSMUST00000229596 - NO_TRANSLATION retained_intron ENSMUSG00000023022 Lima1 ENSMUST00000109024 ENSMUSP00000104652 TRANSLATION protein_coding - CCDS37206.1 1 593.0 8.0 1.0 2.0 44.9 0.0 -4,-5 0.5169 14 14.435 ALTERNATIVE:2 ENSMUSG00000023022 Lima1 ENSMUST00000172119 - NO_TRANSLATION retained_intron ENSMUSG00000023022 Lima1 ENSMUST00000231121 ENSMUSP00000155772 TRANSLATION protein_coding stop - - 109.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000023022 Lima1 ENSMUST00000073691 ENSMUSP00000073371 TRANSLATION protein_coding - CCDS49729.1 1 753.0 8.0 1.0 3.3 44.9 0.0 -4,-1 1.0 18 15.0 PRINCIPAL:2 ENSMUSG00000023022 Lima1 ENSMUST00000171450 - NO_TRANSLATION retained_intron ENSMUSG00000023022 Lima1 ENSMUST00000230033 - NO_TRANSLATION retained_intron ENSMUSG00000050328 Hoxc12 ENSMUST00000055562 ENSMUSP00000051003 TRANSLATION protein_coding - CCDS27891.1 1 280.0 0.0 1.0 9.2 64.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078954 Arhgap8 ENSMUST00000100464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078954 Arhgap8 ENSMUST00000006029 ENSMUSP00000006029 TRANSLATION protein_coding - CCDS27712.1 5 425.0 0.0 6.4375 0.4 276.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000078954 Arhgap8 ENSMUST00000167499 - NO_TRANSLATION retained_intron ENSMUSG00000078954 Arhgap8 ENSMUST00000169075 - NO_TRANSLATION retained_intron ENSMUSG00000078954 Arhgap8 ENSMUST00000163312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078954 Arhgap8 ENSMUST00000168811 ENSMUSP00000130977 TRANSLATION protein_coding - CCDS27712.1 1 425.0 0.0 6.4375 0.4 276.7 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000078938 Syce3 ENSMUST00000167959 ENSMUSP00000131766 TRANSLATION protein_coding - CCDS49703.1 1 88.0 0.0 2.0 12.0 134.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078938 Syce3 ENSMUST00000109314 ENSMUSP00000104937 TRANSLATION protein_coding - CCDS49703.1 1 88.0 0.0 2.0 12.0 134.9 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000098112 Bin2 ENSMUST00000182068 ENSMUSP00000138316 TRANSLATION protein_coding stop - 5 160.0 0.0 2.1 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000098112 Bin2 ENSMUST00000238935 ENSMUSP00000159169 TRANSLATION protein_coding - - - 518.0 0.0 7.1 0.0 125.4 0.0 -4,-6 0.7516 15 8.0 PRINCIPAL:2 ENSMUSG00000098112 Bin2 ENSMUST00000182494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000098112 Bin2 ENSMUST00000182574 ENSMUSP00000138102 TRANSLATION protein_coding stop - 5 210.0 0.0 4.6 0.0 59.4 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000098112 Bin2 ENSMUST00000182775 ENSMUSP00000138673 TRANSLATION protein_coding - - 5 473.0 0.0 6.1 0.0 102.8 0.0 -4,-6 0.0037 12 4.002 MINOR ENSMUSG00000098112 Bin2 ENSMUST00000183193 - NO_TRANSLATION retained_intron ENSMUSG00000098112 Bin2 ENSMUST00000183211 ENSMUSP00000138523 TRANSLATION protein_coding - CCDS59622.1 5 505.0 0.0 7.1 0.0 125.4 0.0 -4,-6 0.4743 15 8.0 ALTERNATIVE:2 ENSMUSG00000098112 Bin2 ENSMUST00000182814 ENSMUSP00000138158 TRANSLATION protein_coding - - 5 478.0 0.0 6.35 0.0 86.2 0.0 -4,-5 0.0005 13 4.5 MINOR ENSMUSG00000033287 Kctd17 ENSMUST00000229290 ENSMUSP00000155643 TRANSLATION protein_coding - - - 118.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0 2 0.9 MINOR ENSMUSG00000033287 Kctd17 ENSMUST00000162808 ENSMUSP00000125421 TRANSLATION protein_coding start - 5 210.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.0179 2 -2.0 MINOR ENSMUSG00000033287 Kctd17 ENSMUST00000162321 ENSMUSP00000125680 TRANSLATION nonsense_mediated_decay start - 5 206.0 0.0 4.75 0.0 58.2 0.0 -4,-5 0.0028 3 -2.0 MINOR ENSMUSG00000033287 Kctd17 ENSMUST00000166142 ENSMUSP00000133210 TRANSLATION protein_coding - - 1 218.0 0.0 5.55 0.0 81.5 0.0 -4,-5 0.7569 5 8.0 PRINCIPAL:2 ENSMUSG00000033287 Kctd17 ENSMUST00000159771 ENSMUSP00000125574 TRANSLATION protein_coding - - 2 213.0 0.0 5.55 0.0 81.5 0.0 -4,-5 0.1025 5 8.0 ALTERNATIVE:2 ENSMUSG00000033287 Kctd17 ENSMUST00000160916 - NO_TRANSLATION retained_intron ENSMUSG00000033287 Kctd17 ENSMUST00000162517 ENSMUSP00000124290 TRANSLATION protein_coding - - 1 243.0 0.0 5.55 0.0 81.5 0.0 -4,-5 0.019 5 8.0 ALTERNATIVE:2 ENSMUSG00000033287 Kctd17 ENSMUST00000161016 - NO_TRANSLATION retained_intron ENSMUSG00000033287 Kctd17 ENSMUST00000089414 ENSMUSP00000086835 TRANSLATION protein_coding - - 5 289.0 0.0 5.55 0.0 81.5 0.0 -4,-5 0.0294 5 8.0 ALTERNATIVE:2 ENSMUSG00000033287 Kctd17 ENSMUST00000162605 - NO_TRANSLATION retained_intron ENSMUSG00000033287 Kctd17 ENSMUST00000229622 ENSMUSP00000155227 TRANSLATION protein_coding start - - 173.0 0.0 4.0 0.0 39.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000016619 Nup50 ENSMUST00000230411 ENSMUSP00000155656 TRANSLATION protein_coding - CCDS27714.1 - 466.0 0.0 4.1 5.8 111.0 0.0 -4,-5 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000016619 Nup50 ENSMUST00000165443 ENSMUSP00000131457 TRANSLATION protein_coding - CCDS27714.1 1 466.0 0.0 4.1 5.8 111.0 0.0 -4,-5 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000022313 Utp23 ENSMUST00000136129 ENSMUSP00000124832 TRANSLATION protein_coding - - 1 143.0 0.0 2.43 0.0 38.6 0.0 -4,-5 0.0 3 2.784 MINOR ENSMUSG00000022313 Utp23 ENSMUST00000137116 ENSMUSP00000119261 TRANSLATION protein_coding - CCDS27462.1 1 249.0 0.0 5.18 15.5 100.5 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000022313 Utp23 ENSMUST00000161651 ENSMUSP00000124157 TRANSLATION protein_coding - - 5 120.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 1 0.0 MINOR ENSMUSG00000022313 Utp23 ENSMUST00000059599 ENSMUSP00000050603 TRANSLATION protein_coding - - 1 68.0 0.0 1.75 0.0 0.0 0.0 -4,-7 0.0 2 0.0 MINOR ENSMUSG00000022472 Desi1 ENSMUST00000089187 ENSMUSP00000086591 TRANSLATION nonsense_mediated_decay - - 5 41.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022472 Desi1 ENSMUST00000135988 ENSMUSP00000117613 TRANSLATION nonsense_mediated_decay - - 1 106.0 0.0 3.41 0.0 77.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022472 Desi1 ENSMUST00000146628 ENSMUSP00000114888 TRANSLATION nonsense_mediated_decay - - 1 95.0 0.0 1.855 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022472 Desi1 ENSMUST00000129039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022472 Desi1 ENSMUST00000023110 ENSMUSP00000023110 TRANSLATION nonsense_mediated_decay - - 3 57.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022472 Desi1 ENSMUST00000152227 ENSMUSP00000121504 TRANSLATION protein_coding - CCDS27681.1 1 168.0 0.0 5.66 20.6 149.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022248 Rad1 ENSMUST00000100775 ENSMUSP00000098338 TRANSLATION protein_coding - CCDS70618.1 1 272.0 0.0 5.83 0.0 221.0 0.0 -4,-5 0.0388 - 6.774 MINOR ENSMUSG00000022248 Rad1 ENSMUST00000170531 - NO_TRANSLATION retained_intron ENSMUSG00000022248 Rad1 ENSMUST00000170100 ENSMUSP00000128601 TRANSLATION nonsense_mediated_decay start - 2 163.0 0.0 3.75 0.0 167.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022248 Rad1 ENSMUST00000168408 ENSMUSP00000132747 TRANSLATION nonsense_mediated_decay - - 5 68.0 0.0 2.0 0.0 51.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022248 Rad1 ENSMUST00000169519 ENSMUSP00000126645 TRANSLATION protein_coding stop - 1 133.0 0.0 3.75 0.0 118.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022248 Rad1 ENSMUST00000022856 ENSMUSP00000022856 TRANSLATION protein_coding - CCDS27379.1 1 280.0 0.0 6.83 33.1 274.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022247 Brix1 ENSMUST00000168761 ENSMUSP00000130602 TRANSLATION nonsense_mediated_decay start - 5 88.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022247 Brix1 ENSMUST00000168690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022247 Brix1 ENSMUST00000169050 ENSMUSP00000127437 TRANSLATION protein_coding stop - 3 154.0 0.0 2.5 0.0 43.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000022247 Brix1 ENSMUST00000022855 ENSMUSP00000022855 TRANSLATION protein_coding - CCDS37042.1 1 353.0 0.0 7.25 8.8 135.3 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000022236 Ropn1l ENSMUST00000110408 ENSMUSP00000106038 TRANSLATION protein_coding - CCDS37053.1 1 218.0 0.0 0.932 14.1 0.0 0.0 -4,-5 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000044986 Tst ENSMUST00000058659 ENSMUSP00000055743 TRANSLATION protein_coding - CCDS27614.1 1 297.0 3.0 2.0 22.3 97.1 0.0 -4,-1 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000044986 Tst ENSMUST00000231525 - NO_TRANSLATION retained_intron ENSMUSG00000022607 Ptk2 ENSMUST00000226893 ENSMUSP00000154733 TRANSLATION protein_coding stop - - 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0143 - -2.0 MINOR ENSMUSG00000022607 Ptk2 ENSMUST00000226988 ENSMUSP00000154242 TRANSLATION protein_coding - - - 1055.0 18.0 20.57 4.3 541.5 0.0 -4,-5 0.448 26 18.651 MINOR ENSMUSG00000022607 Ptk2 ENSMUST00000227569 - NO_TRANSLATION retained_intron ENSMUSG00000022607 Ptk2 ENSMUST00000227686 ENSMUSP00000153821 TRANSLATION protein_coding stop - - 114.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022607 Ptk2 ENSMUST00000110036 ENSMUSP00000105663 TRANSLATION protein_coding - CCDS37099.1 1 1052.0 18.0 20.57 4.3 541.5 0.0 -4,-5 0.6034 26 18.651 MINOR ENSMUSG00000022607 Ptk2 ENSMUST00000226466 ENSMUSP00000154075 TRANSLATION protein_coding stop - - 126.0 0.0 2.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022607 Ptk2 ENSMUST00000227435 - NO_TRANSLATION retained_intron ENSMUSG00000022607 Ptk2 ENSMUST00000226742 - NO_TRANSLATION retained_intron ENSMUSG00000022607 Ptk2 ENSMUST00000226791 ENSMUSP00000154578 TRANSLATION protein_coding stop - - 119.0 0.0 3.83 0.0 28.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022607 Ptk2 ENSMUST00000226454 - NO_TRANSLATION retained_intron ENSMUSG00000022607 Ptk2 ENSMUST00000228180 ENSMUSP00000155470 TRANSLATION protein_coding - - - 198.0 0.0 5.33 0.0 0.0 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000022607 Ptk2 ENSMUST00000228457 - NO_TRANSLATION retained_intron ENSMUSG00000022607 Ptk2 ENSMUST00000239146 ENSMUSP00000159174 TRANSLATION protein_coding - - - 1093.0 18.0 20.735 11.1 541.5 0.0 -4,-5 1.0 27 21.0 PRINCIPAL:1 ENSMUSG00000022607 Ptk2 ENSMUST00000226848 ENSMUSP00000153989 TRANSLATION protein_coding stop - - 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0143 - -2.0 MINOR ENSMUSG00000022607 Ptk2 ENSMUST00000228628 - NO_TRANSLATION retained_intron ENSMUSG00000022607 Ptk2 ENSMUST00000227395 ENSMUSP00000154445 TRANSLATION protein_coding stop - - 81.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000022571 Pycrl ENSMUST00000053918 ENSMUSP00000049605 TRANSLATION protein_coding - CCDS37109.1 1 274.0 20.0 5.75 8.4 176.5 0.0 -4,-2 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000033565 Rbfox2 ENSMUST00000111581 ENSMUSP00000129372 TRANSLATION protein_coding - - 1 349.0 0.0 3.33 0.0 145.2 0.0 -4,-5 0.0179 - 7.0 MINOR ENSMUSG00000033565 Rbfox2 ENSMUST00000228558 ENSMUSP00000154522 TRANSLATION protein_coding stop - - 275.0 0.0 3.33 0.0 66.0 0.0 -4,-5 0.0245 1 -2.0 MINOR ENSMUSG00000033565 Rbfox2 ENSMUST00000227314 ENSMUSP00000154233 TRANSLATION protein_coding - CCDS49657.1 - 378.0 0.0 3.33 12.8 203.3 0.0 -4,-5 1.0 2 11.0 PRINCIPAL:4 ENSMUSG00000033565 Rbfox2 ENSMUST00000227930 ENSMUSP00000154810 TRANSLATION protein_coding - - - 283.0 0.0 0.83 0.0 150.3 0.0 -4,-5 0.0003 2 2.002 MINOR ENSMUSG00000033565 Rbfox2 ENSMUST00000228253 ENSMUSP00000154021 TRANSLATION protein_coding start - - 47.0 0.0 0.0 0.0 26.9 0.0 -3,-1 0.0 - -2.0 MINOR ENSMUSG00000033565 Rbfox2 ENSMUST00000228361 ENSMUSP00000154719 TRANSLATION protein_coding start/stop - - 300.0 0.0 3.33 0.0 114.0 0.0 -4,-5 0.0159 1 -2.0 MINOR ENSMUSG00000033565 Rbfox2 ENSMUST00000171751 ENSMUSP00000130739 TRANSLATION protein_coding - CCDS49659.1 1 449.0 0.0 3.33 3.2 216.3 0.0 -4,-6 0.4793 3 8.558 MINOR ENSMUSG00000033565 Rbfox2 ENSMUST00000226877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033565 Rbfox2 ENSMUST00000048145 ENSMUSP00000048056 TRANSLATION protein_coding - CCDS27598.1 1 435.0 0.0 3.33 5.2 145.2 0.0 -4,-6 0.3138 1 8.068 MINOR ENSMUSG00000033565 Rbfox2 ENSMUST00000227533 ENSMUSP00000154209 TRANSLATION protein_coding - - - 346.0 0.0 2.33 0.0 159.0 0.0 -4,-5 0.0007 2 5.002 MINOR ENSMUSG00000033565 Rbfox2 ENSMUST00000230194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033565 Rbfox2 ENSMUST00000228087 ENSMUSP00000153751 TRANSLATION protein_coding - - - 377.0 0.0 3.33 12.8 215.4 0.0 -4,-5 0.875 2 11.0 ALTERNATIVE:1 ENSMUSG00000033565 Rbfox2 ENSMUST00000228582 ENSMUSP00000154408 TRANSLATION protein_coding stop - - 201.0 0.0 1.5 0.0 21.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000033565 Rbfox2 ENSMUST00000228190 - NO_TRANSLATION retained_intron ENSMUSG00000047921 Trappc9 ENSMUST00000230270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047921 Trappc9 ENSMUST00000240670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047921 Trappc9 ENSMUST00000228960 ENSMUSP00000155105 TRANSLATION protein_coding - - - 494.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0397 15 0.0 MINOR ENSMUSG00000047921 Trappc9 ENSMUST00000089770 ENSMUSP00000087202 TRANSLATION protein_coding - CCDS37095.1 1 1139.0 0.0 0.0 9.6 0.0 0.0 -4,-7 1.0 30 3.0 PRINCIPAL:1 ENSMUSG00000047921 Trappc9 ENSMUST00000170633 ENSMUSP00000131997 TRANSLATION protein_coding - CCDS49630.1 1 940.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1856 25 0.0 MINOR ENSMUSG00000047921 Trappc9 ENSMUST00000240671 ENSMUSP00000159497 TRANSLATION protein_coding - - - 297.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0227 5 0.0 MINOR ENSMUSG00000047921 Trappc9 ENSMUST00000023276 ENSMUSP00000023276 TRANSLATION protein_coding - CCDS37096.1 1 960.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2065 23 0.0 MINOR ENSMUSG00000047921 Trappc9 ENSMUST00000230025 - NO_TRANSLATION retained_intron ENSMUSG00000045267 Tas2r119 ENSMUST00000057633 ENSMUSP00000050277 TRANSLATION protein_coding - CCDS49590.1 - 334.0 0.0 0.0 0.1 297.9 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054863 Tafa5 ENSMUST00000068088 ENSMUSP00000064808 TRANSLATION protein_coding - CCDS49693.1 1 125.0 0.0 2.6 19.9 150.4 0.0 4,-1 1.0 - 11.42 PRINCIPAL:4 ENSMUSG00000054863 Tafa5 ENSMUST00000230414 ENSMUSP00000155322 TRANSLATION protein_coding - - - 132.0 0.0 2.6 23.1 150.4 0.0 -3,-5 0.9221 - 12.0 ALTERNATIVE:1 ENSMUSG00000098176 Ccdc166 ENSMUST00000182172 ENSMUSP00000138510 TRANSLATION protein_coding - CCDS59620.1 - 211.0 0.0 1.0 0.0 25.8 0.0 -4,-6 0.0206 - 4.206 MINOR ENSMUSG00000098176 Ccdc166 ENSMUST00000183130 ENSMUSP00000138115 TRANSLATION protein_coding - CCDS59621.1 2 449.0 0.0 2.6 0.0 81.7 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000011960 Ccnt1 ENSMUST00000012104 ENSMUSP00000012104 TRANSLATION protein_coding - CCDS27797.1 1 724.0 0.0 6.5 0.0 70.0 0.0 -4,-5 1.0 11 11.64 PRINCIPAL:1 ENSMUSG00000011960 Ccnt1 ENSMUST00000170452 - NO_TRANSLATION retained_intron ENSMUSG00000011960 Ccnt1 ENSMUST00000130921 - NO_TRANSLATION retained_intron ENSMUSG00000011960 Ccnt1 ENSMUST00000163180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011960 Ccnt1 ENSMUST00000168928 ENSMUSP00000130286 TRANSLATION nonsense_mediated_decay - - 5 184.0 0.0 4.75 1.0 74.5 0.0 -4,-5 0.1129 3 -2.0 MINOR ENSMUSG00000011960 Ccnt1 ENSMUST00000169707 ENSMUSP00000126874 TRANSLATION protein_coding - CCDS27797.1 1 724.0 0.0 6.5 0.0 70.0 0.0 -4,-5 1.0 11 11.64 PRINCIPAL:1 ENSMUSG00000011960 Ccnt1 ENSMUST00000164565 - NO_TRANSLATION retained_intron ENSMUSG00000011960 Ccnt1 ENSMUST00000169674 - NO_TRANSLATION retained_intron ENSMUSG00000011960 Ccnt1 ENSMUST00000164294 - NO_TRANSLATION retained_intron ENSMUSG00000022425 Enpp2 ENSMUST00000173516 ENSMUSP00000133877 TRANSLATION protein_coding - CCDS70629.1 1 910.0 14.0 20.08 9.5 365.4 1.0 0,-3 0.8754 13 18.654 MINOR ENSMUSG00000022425 Enpp2 ENSMUST00000227057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022425 Enpp2 ENSMUST00000167541 ENSMUSP00000132640 TRANSLATION protein_coding - CCDS70628.1 1 887.0 14.0 19.83 8.4 377.5 1.0 0,-3 0.8851 14 18.576 MINOR ENSMUSG00000022425 Enpp2 ENSMUST00000226339 ENSMUSP00000154729 TRANSLATION protein_coding stop - - 118.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000022425 Enpp2 ENSMUST00000171545 ENSMUSP00000128941 TRANSLATION protein_coding - CCDS49607.1 1 914.0 14.0 20.08 9.5 365.4 1.0 0,-3 0.8727 13 18.654 MINOR ENSMUSG00000022425 Enpp2 ENSMUST00000228222 ENSMUSP00000154470 TRANSLATION protein_coding stop - - 62.0 2.0 2.0 0.0 89.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022425 Enpp2 ENSMUST00000228823 - NO_TRANSLATION retained_intron ENSMUSG00000022425 Enpp2 ENSMUST00000041591 ENSMUSP00000036180 TRANSLATION protein_coding - CCDS27472.1 1 862.0 14.0 20.58 11.7 377.5 1.0 0,-3 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000022425 Enpp2 ENSMUST00000227483 - NO_TRANSLATION retained_intron ENSMUSG00000108728 OR5BS1P ENSMUST00000216180 ENSMUSP00000153483 TRANSLATION protein_coding - - 5 308.0 0.0 2.0 4.6 152.6 0.0 -3,-5 0.872 - 14.0 PRINCIPAL:1 ENSMUSG00000022272 Myo10 ENSMUST00000110457 ENSMUSP00000106087 TRANSLATION protein_coding - CCDS37049.1 1 2062.0 15.0 35.838 2.4 1199.4 0.0 -4,-5 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000022272 Myo10 ENSMUST00000131834 ENSMUSP00000119200 TRANSLATION protein_coding stop - 2 25.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0145 1 -2.0 MINOR ENSMUSG00000022272 Myo10 ENSMUST00000125667 ENSMUSP00000120566 TRANSLATION protein_coding stop - 5 237.0 0.0 5.58 0.0 136.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022272 Myo10 ENSMUST00000130517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022272 Myo10 ENSMUST00000145587 - NO_TRANSLATION retained_intron ENSMUSG00000022272 Myo10 ENSMUST00000135173 ENSMUSP00000118744 TRANSLATION protein_coding stop - 2 179.0 0.0 4.18 0.0 137.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022272 Myo10 ENSMUST00000151360 ENSMUSP00000119367 TRANSLATION protein_coding stop - 5 51.0 0.0 1.58 0.0 51.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022272 Myo10 ENSMUST00000126076 - NO_TRANSLATION retained_intron ENSMUSG00000022272 Myo10 ENSMUST00000127486 - NO_TRANSLATION retained_intron ENSMUSG00000022272 Myo10 ENSMUST00000124966 ENSMUSP00000120817 TRANSLATION protein_coding stop - 3 104.0 0.0 1.6 0.0 59.4 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000022272 Myo10 ENSMUST00000137601 ENSMUSP00000118280 TRANSLATION protein_coding stop - 1 786.0 15.0 19.444 0.0 849.5 0.0 -4,-5 0.0468 7 -2.0 MINOR ENSMUSG00000022272 Myo10 ENSMUST00000135981 ENSMUSP00000123057 TRANSLATION protein_coding start/stop - 5 242.0 0.0 5.5 0.0 164.7 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000022272 Myo10 ENSMUST00000022882 ENSMUSP00000022882 TRANSLATION protein_coding - - 1 1316.0 0.0 16.494 0.0 409.3 0.0 -4,-1 0.0734 11 0.0 MINOR ENSMUSG00000022181 C6 ENSMUST00000162350 ENSMUSP00000125693 TRANSLATION protein_coding - - 5 934.0 23.0 17.15 1.5 336.6 0.0 4,-1 0.86 14 19.0 PRINCIPAL:1 ENSMUSG00000022181 C6 ENSMUST00000162729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022181 C6 ENSMUST00000161997 ENSMUSP00000125358 TRANSLATION protein_coding stop - 1 261.0 13.0 5.3 0.0 104.4 0.0 4,-1 0.0008 4 -2.0 MINOR ENSMUSG00000022181 C6 ENSMUST00000022788 ENSMUSP00000022788 TRANSLATION protein_coding - CCDS37025.1 5 769.0 23.0 14.15 0.0 336.6 0.0 4,-1 0.2599 16 12.0 MINOR ENSMUSG00000022181 C6 ENSMUST00000162585 ENSMUSP00000124417 TRANSLATION protein_coding - CCDS37025.1 1 769.0 23.0 14.15 0.0 336.6 0.0 4,-1 0.2599 16 12.0 MINOR ENSMUSG00000003360 Ddx23 ENSMUST00000003450 ENSMUSP00000003450 TRANSLATION protein_coding - CCDS37193.1 5 819.0 12.0 8.0 14.5 285.4 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000003360 Ddx23 ENSMUST00000160506 - NO_TRANSLATION retained_intron ENSMUSG00000003360 Ddx23 ENSMUST00000161030 - NO_TRANSLATION retained_intron ENSMUSG00000003360 Ddx23 ENSMUST00000159423 - NO_TRANSLATION retained_intron ENSMUSG00000003360 Ddx23 ENSMUST00000159170 - NO_TRANSLATION retained_intron ENSMUSG00000003360 Ddx23 ENSMUST00000162384 ENSMUSP00000125168 TRANSLATION protein_coding stop - 5 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003360 Ddx23 ENSMUST00000228973 - NO_TRANSLATION retained_intron ENSMUSG00000022306 Zfpm2 ENSMUST00000053467 ENSMUSP00000051335 TRANSLATION protein_coding - CCDS27447.1 1 1151.0 20.0 1.03 19.1 28.0 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000022306 Zfpm2 ENSMUST00000229777 - NO_TRANSLATION retained_intron ENSMUSG00000022306 Zfpm2 ENSMUST00000230723 - NO_TRANSLATION retained_intron ENSMUSG00000022306 Zfpm2 ENSMUST00000230319 ENSMUSP00000155094 TRANSLATION protein_coding - - - 1019.0 20.0 0.72 4.9 28.0 0.0 -4,-5 0.2916 2 17.054 MINOR ENSMUSG00000039007 Cpq ENSMUST00000228737 ENSMUSP00000154802 TRANSLATION protein_coding stop - - 198.0 0.0 2.75 0.0 0.0 0.0 3,-2 0.0007 5 -2.0 MINOR ENSMUSG00000039007 Cpq ENSMUST00000228916 ENSMUSP00000154400 TRANSLATION protein_coding - CCDS27414.1 - 470.0 6.0 8.25 14.5 92.9 0.0 3,-2 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000039007 Cpq ENSMUST00000042167 ENSMUSP00000039046 TRANSLATION protein_coding - CCDS27414.1 1 470.0 6.0 8.25 14.5 92.9 0.0 3,-2 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000039007 Cpq ENSMUST00000226483 ENSMUSP00000153768 TRANSLATION protein_coding stop - - 115.0 0.0 1.0 0.0 0.0 0.0 3,-2 0.0007 3 -2.0 MINOR ENSMUSG00000039007 Cpq ENSMUST00000226814 - NO_TRANSLATION retained_intron ENSMUSG00000039007 Cpq ENSMUST00000227018 - NO_TRANSLATION retained_intron ENSMUSG00000039007 Cpq ENSMUST00000226896 - NO_TRANSLATION retained_intron ENSMUSG00000072487 Mroh5 ENSMUST00000151999 ENSMUSP00000118236 TRANSLATION nonsense_mediated_decay - - 1 1007.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.1879 - -2.0 MINOR ENSMUSG00000072487 Mroh5 ENSMUST00000238402 ENSMUSP00000158590 TRANSLATION protein_coding - - - 1293.0 0.0 1.87 0.1 0.0 0.0 -4,-1 0.8496 - 6.0 PRINCIPAL:1 ENSMUSG00000072487 Mroh5 ENSMUST00000110021 ENSMUSP00000105648 TRANSLATION protein_coding - - 1 427.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0488 - 0.0 MINOR ENSMUSG00000072487 Mroh5 ENSMUST00000136698 - NO_TRANSLATION retained_intron ENSMUSG00000072487 Mroh5 ENSMUST00000071419 ENSMUSP00000071366 TRANSLATION protein_coding - CCDS27520.1 1 424.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.2293 - 0.0 MINOR ENSMUSG00000091694 Apol11b ENSMUST00000181467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091694 Apol11b ENSMUST00000166623 ENSMUSP00000129476 TRANSLATION protein_coding - CCDS49662.1 3 337.0 0.0 0.375 0.0 251.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091694 Apol11b ENSMUST00000181154 ENSMUSP00000137798 TRANSLATION protein_coding stop - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000091694 Apol11b ENSMUST00000180949 ENSMUSP00000137890 TRANSLATION protein_coding - CCDS49662.1 1 337.0 0.0 0.375 0.0 251.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000001076 C1ql4 ENSMUST00000064462 ENSMUSP00000068402 TRANSLATION protein_coding - CCDS27814.1 1 238.0 0.0 1.6 8.5 120.2 0.0 2,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000089837 Npcd ENSMUST00000089299 ENSMUSP00000086714 TRANSLATION protein_coding,RT - CCDS27652.1 1 469.0 0.0 5.6 0.7 161.9 0.0 -4,-5 0.2905 - -2.0 PRINCIPAL:5 ENSMUSG00000089837 Npcd ENSMUST00000023060 ENSMUSP00000023060 TRANSLATION protein_coding,RT - CCDS27651.1 1 372.0 0.0 5.6 0.7 161.9 0.0 -4,-5 1.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000022419 Deptor ENSMUST00000100660 ENSMUSP00000098225 TRANSLATION protein_coding - - 1 401.0 0.0 2.92 0.0 156.2 0.0 -4,-5 0.0555 8 6.8 MINOR ENSMUSG00000022419 Deptor ENSMUST00000226687 ENSMUSP00000154546 TRANSLATION nonsense_mediated_decay - - - 100.0 0.0 0.8 0.0 68.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000022419 Deptor ENSMUST00000023056 ENSMUSP00000023056 TRANSLATION protein_coding - CCDS27475.1 1 397.0 0.0 3.52 2.2 156.2 0.0 -4,-7 0.801 8 8.48 ALTERNATIVE:2 ENSMUSG00000022419 Deptor ENSMUST00000096433 ENSMUSP00000094167 TRANSLATION protein_coding - CCDS27474.1 1 409.0 0.0 3.52 3.5 156.2 0.0 -4,-5 1.0 9 9.0 PRINCIPAL:3 ENSMUSG00000024479 Mal2 ENSMUST00000025356 ENSMUSP00000025356 TRANSLATION protein_coding - CCDS27470.1 1 175.0 0.0 1.97 15.5 64.0 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000045350 Fam186a ENSMUST00000100209 ENSMUSP00000097783 TRANSLATION protein_coding - - 5 3035.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.8688 1 6.0 PRINCIPAL:1 ENSMUSG00000045350 Fam186a ENSMUST00000062631 ENSMUSP00000053434 TRANSLATION protein_coding - CCDS37207.1 1 104.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2239 - 0.0 MINOR ENSMUSG00000036106 Prr5 ENSMUST00000065499 ENSMUSP00000066396 TRANSLATION protein_coding - CCDS27711.1 1 387.0 0.0 5.2 4.6 0.0 0.0 -4,-2 0.8901 3 7.532 ALTERNATIVE:1 ENSMUSG00000036106 Prr5 ENSMUST00000171460 ENSMUSP00000127890 TRANSLATION protein_coding - CCDS84185.1 1 378.0 0.0 5.2 5.7 0.0 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:4 ENSMUSG00000003354 Ccdc65 ENSMUST00000229471 ENSMUSP00000155191 TRANSLATION protein_coding - - - 104.0 0.0 0.0 0.0 75.3 0.0 -4,-5 0.0004 1 4.53 MINOR ENSMUSG00000003354 Ccdc65 ENSMUST00000003444 ENSMUSP00000003444 TRANSLATION protein_coding - CCDS27802.1 1 493.0 0.0 0.0 0.9 99.7 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000101892 9130401M01Rik ENSMUST00000187062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101892 9130401M01Rik ENSMUST00000189159 ENSMUSP00000141147 TRANSLATION nonsense_mediated_decay start - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0156 - -2.0 MINOR ENSMUSG00000101892 9130401M01Rik ENSMUST00000100655 ENSMUSP00000098220 TRANSLATION protein_coding - CCDS37078.1 1 372.0 0.0 0.0 2.3 0.0 0.0 -4,-5 1.0 3 1.0 PRINCIPAL:1 ENSMUSG00000101892 9130401M01Rik ENSMUST00000185553 ENSMUSP00000140805 TRANSLATION protein_coding stop - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0156 1 -2.0 MINOR ENSMUSG00000015365 Mov10l1 ENSMUST00000015509 ENSMUSP00000015509 TRANSLATION protein_coding - CCDS27737.1 5 1187.0 12.0 4.184 0.0 249.3 0.0 -4,-5 0.5835 - 11.802 ALTERNATIVE:2 ENSMUSG00000015365 Mov10l1 ENSMUST00000156949 - NO_TRANSLATION retained_intron ENSMUSG00000015365 Mov10l1 ENSMUST00000143030 ENSMUSP00000134200 TRANSLATION protein_coding start - 5 310.0 4.0 2.344 0.0 192.7 0.0 -4,-5 0.0019 - -2.0 MINOR ENSMUSG00000015365 Mov10l1 ENSMUST00000148198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015365 Mov10l1 ENSMUST00000146993 ENSMUSP00000118437 TRANSLATION protein_coding - - 5 1239.0 12.0 4.284 0.0 249.3 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000022565 Plec ENSMUST00000169438 ENSMUSP00000127261 TRANSLATION protein_coding - CCDS37117.2 1 4386.0 0.0 24.23 0.1 849.6 0.0 -4,-5 0.3127 223 0.8 MINOR ENSMUSG00000022565 Plec ENSMUST00000169714 ENSMUSP00000126526 TRANSLATION protein_coding - CCDS49644.1 1 4543.0 0.0 28.63 3.1 928.9 0.0 -2,-3 0.961 226 7.914 MINOR ENSMUSG00000022565 Plec ENSMUST00000170915 ENSMUSP00000131946 TRANSLATION protein_coding stop - 1 53.0 0.0 1.55 0.0 0.0 0.0 -4,-5 0.015 - -2.0 MINOR ENSMUSG00000022565 Plec ENSMUST00000171634 ENSMUSP00000126936 TRANSLATION protein_coding stop - 1 964.0 0.0 19.93 0.0 304.6 0.0 -4,-6 0.0077 34 -2.0 MINOR ENSMUSG00000022565 Plec ENSMUST00000080857 ENSMUSP00000079668 TRANSLATION protein_coding - CCDS37117.2 5 4386.0 0.0 24.23 0.1 849.6 0.0 -4,-5 0.3127 223 0.8 MINOR ENSMUSG00000022565 Plec ENSMUST00000089610 ENSMUSP00000087037 TRANSLATION protein_coding - CCDS49649.1 5 4589.0 0.0 28.28 2.1 924.0 0.0 -4,-5 0.8127 227 5.988 MINOR ENSMUSG00000022565 Plec ENSMUST00000165135 - NO_TRANSLATION retained_intron ENSMUSG00000022565 Plec ENSMUST00000169108 ENSMUSP00000126068 TRANSLATION protein_coding - CCDS49646.1 1 4511.0 0.0 28.428 3.1 928.9 0.0 -4,-5 0.8698 226 7.506 MINOR ENSMUSG00000022565 Plec ENSMUST00000073418 ENSMUSP00000073124 TRANSLATION protein_coding - CCDS49647.1 5 4691.0 0.0 28.83 2.1 1050.1 0.0 -4,-6 0.8006 228 8.286 MINOR ENSMUSG00000022565 Plec ENSMUST00000169289 ENSMUSP00000126912 TRANSLATION protein_coding stop - 1 499.0 0.0 11.25 0.0 79.9 0.0 -4,-5 0.0002 24 -2.0 MINOR ENSMUSG00000022565 Plec ENSMUST00000023226 ENSMUSP00000023226 TRANSLATION protein_coding - CCDS37116.1 1 4543.0 0.0 29.03 4.2 928.9 0.0 -4,-6 0.9934 230 9.4 MINOR ENSMUSG00000022565 Plec ENSMUST00000171562 ENSMUSP00000129543 TRANSLATION protein_coding - CCDS37117.2 1 4386.0 0.0 24.23 0.1 849.6 0.0 -4,-5 0.3127 223 0.8 MINOR ENSMUSG00000022565 Plec ENSMUST00000165453 ENSMUSP00000127253 TRANSLATION protein_coding stop - 1 661.0 0.0 15.65 0.0 156.6 0.0 -2,-3 0.0022 27 -2.0 MINOR ENSMUSG00000022565 Plec ENSMUST00000074834 ENSMUSP00000074383 TRANSLATION protein_coding - CCDS37113.1 1 4534.0 0.0 28.38 2.1 928.9 0.0 -4,-5 0.869 226 6.786 MINOR ENSMUSG00000022565 Plec ENSMUST00000165210 ENSMUSP00000156565 TRANSLATION protein_coding start/stop - 5 1646.0 0.0 11.25 0.0 325.5 0.0 -4,-6 0.0233 83 -2.0 MINOR ENSMUSG00000022565 Plec ENSMUST00000071869 ENSMUSP00000071765 TRANSLATION protein_coding - CCDS49648.1 1 4521.0 0.0 28.53 2.8 928.9 0.0 -4,-5 0.8571 226 7.522 MINOR ENSMUSG00000022565 Plec ENSMUST00000170728 ENSMUSP00000130948 TRANSLATION protein_coding stop - 1 43.0 0.0 1.448 0.0 0.0 0.0 -4,-5 0.024 - -2.0 MINOR ENSMUSG00000022565 Plec ENSMUST00000054449 ENSMUSP00000057158 TRANSLATION protein_coding - CCDS49645.1 5 4548.0 0.0 28.63 4.2 926.3 0.0 -2,-3 1.0 226 8.602 MINOR ENSMUSG00000022565 Plec ENSMUST00000076442 ENSMUSP00000075772 TRANSLATION protein_coding - CCDS37114.1 1 4686.0 0.0 28.83 2.8 1052.7 0.0 -4,-6 0.8761 228 8.722 PRINCIPAL:1 ENSMUSG00000022565 Plec ENSMUST00000167754 ENSMUSP00000127867 TRANSLATION protein_coding stop - 5 702.0 0.0 15.3 0.0 154.3 0.0 -4,-5 0.0014 28 -2.0 MINOR ENSMUSG00000022565 Plec ENSMUST00000072692 ENSMUSP00000072478 TRANSLATION protein_coding - CCDS37115.1 1 4550.0 0.0 28.23 1.1 928.9 0.0 -4,-6 0.7421 226 5.86 MINOR ENSMUSG00000022565 Plec ENSMUST00000166428 ENSMUSP00000130915 TRANSLATION protein_coding stop - 2 676.0 0.0 14.55 0.0 154.3 0.0 -4,-5 0.0014 27 -2.0 MINOR ENSMUSG00000093789 Methig1 ENSMUST00000075675 ENSMUSP00000075098 TRANSLATION protein_coding,RT - CCDS27835.1 1 264.0 17.0 3.675 1.3 123.8 1.0 1,-3 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000093789 Methig1 ENSMUST00000175929 ENSMUSP00000135002 TRANSLATION nonsense_mediated_decay,RT - - 1 181.0 17.0 1.0 0.0 66.3 1.0 1,-3 0.0048 - -2.0 ALTERNATIVE:2 ENSMUSG00000022598 Psca ENSMUST00000023265 ENSMUSP00000023265 TRANSLATION protein_coding - CCDS27526.1 1 123.0 0.0 2.0 5.1 43.6 0.0 3,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000023045 Soat2 ENSMUST00000160465 ENSMUSP00000124628 TRANSLATION nonsense_mediated_decay start - 5 284.0 0.0 3.9 0.0 0.0 3.0 -4,-5 0.0017 5 -2.0 MINOR ENSMUSG00000023045 Soat2 ENSMUST00000023806 ENSMUSP00000023806 TRANSLATION protein_coding - CCDS27872.1 1 525.0 0.0 10.4 6.0 197.0 6.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000042109 Csdc2 ENSMUST00000135663 ENSMUSP00000121080 TRANSLATION protein_coding stop - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042109 Csdc2 ENSMUST00000038757 ENSMUSP00000044441 TRANSLATION protein_coding - CCDS27677.1 1 154.0 0.0 3.25 25.9 50.7 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000042109 Csdc2 ENSMUST00000152678 - NO_TRANSLATION retained_intron ENSMUSG00000042109 Csdc2 ENSMUST00000140209 ENSMUSP00000154905 TRANSLATION protein_coding stop - 5 44.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042109 Csdc2 ENSMUST00000230633 ENSMUSP00000155106 TRANSLATION protein_coding stop - - 30.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022551 Cyc1 ENSMUST00000229710 - NO_TRANSLATION retained_intron ENSMUSG00000022551 Cyc1 ENSMUST00000229013 ENSMUSP00000155655 TRANSLATION nonsense_mediated_decay - - - 92.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 1 -2.0 MINOR ENSMUSG00000022551 Cyc1 ENSMUST00000229946 - NO_TRANSLATION retained_intron ENSMUSG00000022551 Cyc1 ENSMUST00000231045 ENSMUSP00000155170 TRANSLATION protein_coding stop - - 165.0 18.0 3.5 0.0 201.5 0.0 0,-2 0.0012 5 -2.0 MINOR ENSMUSG00000022551 Cyc1 ENSMUST00000230706 ENSMUSP00000155129 TRANSLATION protein_coding stop - - 30.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0 - -2.0 MINOR ENSMUSG00000022551 Cyc1 ENSMUST00000229292 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022551 Cyc1 ENSMUST00000023210 ENSMUSP00000023210 TRANSLATION protein_coding - CCDS27567.1 1 325.0 26.0 6.5 5.8 324.4 0.0 -2,2 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000022262 Dnah5 ENSMUST00000067048 ENSMUSP00000069751 TRANSLATION protein_coding - CCDS27404.1 5 4621.0 47.0 44.704 3.2 3033.7 0.0 -4,-1 1.0 30 19.0 PRINCIPAL:1 ENSMUSG00000051879 Krt71 ENSMUST00000023710 ENSMUSP00000023710 TRANSLATION protein_coding - CCDS27862.1 1 524.0 0.0 4.85 11.0 408.5 0.0 -4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000058914 C1qtnf3 ENSMUST00000022853 ENSMUSP00000022853 TRANSLATION protein_coding - CCDS27380.1 1 246.0 0.0 3.8 13.7 157.7 0.0 4,-1 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000058914 C1qtnf3 ENSMUST00000110523 ENSMUSP00000106152 TRANSLATION protein_coding - CCDS56977.1 5 319.0 0.0 3.8 13.7 157.7 0.0 4,-1 0.9003 2 12.0 ALTERNATIVE:1 ENSMUSG00000023169 Slc38a1 ENSMUST00000230767 ENSMUSP00000155160 TRANSLATION protein_coding - - - 72.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000023169 Slc38a1 ENSMUST00000100262 ENSMUSP00000097833 TRANSLATION protein_coding - CCDS27777.1 1 485.0 0.0 4.724 16.9 268.0 8.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000023169 Slc38a1 ENSMUST00000230756 - NO_TRANSLATION retained_intron ENSMUSG00000023169 Slc38a1 ENSMUST00000088454 ENSMUSP00000085801 TRANSLATION protein_coding - CCDS27777.1 1 485.0 0.0 4.724 16.9 268.0 8.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000023169 Slc38a1 ENSMUST00000229253 - NO_TRANSLATION retained_intron ENSMUSG00000023169 Slc38a1 ENSMUST00000088452 ENSMUSP00000085799 TRANSLATION protein_coding - CCDS27777.1 1 485.0 0.0 4.724 16.9 268.0 8.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000023169 Slc38a1 ENSMUST00000230607 - NO_TRANSLATION retained_intron ENSMUSG00000033075 Senp1 ENSMUST00000181349 - NO_TRANSLATION retained_intron ENSMUSG00000033075 Senp1 ENSMUST00000180461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033075 Senp1 ENSMUST00000180657 ENSMUSP00000138056 TRANSLATION protein_coding - - 1 666.0 5.0 5.45 0.0 159.6 0.0 -4,-5 0.0386 7 17.0 MINOR ENSMUSG00000033075 Senp1 ENSMUST00000180716 ENSMUSP00000138032 TRANSLATION nonsense_mediated_decay - - 5 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033075 Senp1 ENSMUST00000181855 - NO_TRANSLATION retained_intron ENSMUSG00000033075 Senp1 ENSMUST00000180531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033075 Senp1 ENSMUST00000182611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033075 Senp1 ENSMUST00000044189 ENSMUSP00000046598 TRANSLATION protein_coding - CCDS49717.1 1 640.0 5.0 5.45 7.8 159.6 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000033075 Senp1 ENSMUST00000183105 ENSMUSP00000138394 TRANSLATION protein_coding stop - 3 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044224 Dnajc21 ENSMUST00000150878 - NO_TRANSLATION retained_intron ENSMUSG00000044224 Dnajc21 ENSMUST00000145719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044224 Dnajc21 ENSMUST00000146323 - NO_TRANSLATION retained_intron ENSMUSG00000044224 Dnajc21 ENSMUST00000136591 ENSMUSP00000116865 TRANSLATION protein_coding - CCDS49581.1 5 531.0 4.0 2.2 6.5 134.1 0.0 -4,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000044224 Dnajc21 ENSMUST00000147224 - NO_TRANSLATION retained_intron ENSMUSG00000022286 Grhl2 ENSMUST00000228589 - NO_TRANSLATION retained_intron ENSMUSG00000022286 Grhl2 ENSMUST00000161532 ENSMUSP00000124903 TRANSLATION protein_coding stop - 2 152.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022286 Grhl2 ENSMUST00000161933 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022286 Grhl2 ENSMUST00000161405 ENSMUSP00000125410 TRANSLATION protein_coding - - 1 451.0 0.0 3.33 0.0 255.6 0.0 -4,-5 0.0032 11 8.328 MINOR ENSMUSG00000022286 Grhl2 ENSMUST00000022895 ENSMUSP00000022895 TRANSLATION protein_coding - CCDS27434.1 1 625.0 0.0 4.33 22.1 283.5 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000022286 Grhl2 ENSMUST00000159221 ENSMUSP00000123871 TRANSLATION protein_coding start - 3 158.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000033039 Micall1 ENSMUST00000229031 ENSMUSP00000154886 TRANSLATION nonsense_mediated_decay - - - 324.0 7.0 3.6 0.0 120.6 0.0 -4,-2 0.0007 3 -2.0 MINOR ENSMUSG00000033039 Micall1 ENSMUST00000229694 - NO_TRANSLATION retained_intron ENSMUSG00000033039 Micall1 ENSMUST00000040320 ENSMUSP00000042053 TRANSLATION protein_coding - CCDS49667.1 1 870.0 7.0 6.25 0.0 271.5 0.0 -4,-2 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000033039 Micall1 ENSMUST00000229048 - NO_TRANSLATION retained_intron ENSMUSG00000033039 Micall1 ENSMUST00000230779 - NO_TRANSLATION retained_intron ENSMUSG00000033039 Micall1 ENSMUST00000229004 ENSMUSP00000155420 TRANSLATION nonsense_mediated_decay start - - 98.0 0.0 2.5 0.0 77.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033039 Micall1 ENSMUST00000229113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033039 Micall1 ENSMUST00000230202 - NO_TRANSLATION retained_intron ENSMUSG00000023010 Tmbim6 ENSMUST00000231173 ENSMUSP00000155747 TRANSLATION protein_coding start - - 26.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000023010 Tmbim6 ENSMUST00000162274 ENSMUSP00000125437 TRANSLATION protein_coding stop - 1 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023010 Tmbim6 ENSMUST00000159531 ENSMUSP00000125318 TRANSLATION protein_coding - CCDS37201.1 5 237.0 0.0 6.25 10.3 144.2 7.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000023010 Tmbim6 ENSMUST00000160454 - NO_TRANSLATION retained_intron ENSMUSG00000023010 Tmbim6 ENSMUST00000162624 ENSMUSP00000125091 TRANSLATION protein_coding stop - 3 204.0 0.0 5.5 0.0 120.8 7.0 -4,-7 0.0473 3 -2.0 MINOR ENSMUSG00000023010 Tmbim6 ENSMUST00000161778 ENSMUSP00000124805 TRANSLATION protein_coding stop - 5 235.0 0.0 6.25 10.3 144.2 7.0 -4,-7 0.8294 4 -2.0 MINOR ENSMUSG00000023010 Tmbim6 ENSMUST00000161250 ENSMUSP00000125563 TRANSLATION protein_coding - CCDS37201.1 5 237.0 0.0 6.25 10.3 144.2 7.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000023010 Tmbim6 ENSMUST00000231147 - NO_TRANSLATION retained_intron ENSMUSG00000023010 Tmbim6 ENSMUST00000023749 ENSMUSP00000023749 TRANSLATION protein_coding - CCDS37201.1 1 237.0 0.0 6.25 10.3 144.2 7.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000023010 Tmbim6 ENSMUST00000160635 ENSMUSP00000124651 TRANSLATION protein_coding - CCDS37201.1 5 237.0 0.0 6.25 10.3 144.2 7.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000023010 Tmbim6 ENSMUST00000229392 ENSMUSP00000155580 TRANSLATION protein_coding start/stop - - 193.0 0.0 5.0 0.0 130.1 6.0 -4,-7 0.0051 1 -2.0 MINOR ENSMUSG00000023010 Tmbim6 ENSMUST00000159209 ENSMUSP00000125117 TRANSLATION protein_coding - CCDS37201.1 5 237.0 0.0 6.25 10.3 144.2 7.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000062397 Zfp706 ENSMUST00000226453 ENSMUSP00000154190 TRANSLATION protein_coding - CCDS37063.1 - 76.0 3.0 1.6 36.8 64.8 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000062397 Zfp706 ENSMUST00000226257 - NO_TRANSLATION retained_intron ENSMUSG00000062397 Zfp706 ENSMUST00000228275 ENSMUSP00000154243 TRANSLATION protein_coding - CCDS37063.1 - 76.0 3.0 1.6 36.8 64.8 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000062397 Zfp706 ENSMUST00000078976 ENSMUSP00000077996 TRANSLATION protein_coding - CCDS37063.1 1 76.0 3.0 1.6 36.8 64.8 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000062397 Zfp706 ENSMUST00000226671 ENSMUSP00000154192 TRANSLATION protein_coding - CCDS37063.1 - 76.0 3.0 1.6 36.8 64.8 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000022580 Rhpn1 ENSMUST00000143056 - NO_TRANSLATION retained_intron ENSMUSG00000022580 Rhpn1 ENSMUST00000229670 - NO_TRANSLATION retained_intron ENSMUSG00000022580 Rhpn1 ENSMUST00000023244 ENSMUSP00000023244 TRANSLATION protein_coding - CCDS27548.1 1 643.0 0.0 10.334 0.0 393.1 0.0 -4,-5 0.1631 2 10.11 MINOR ENSMUSG00000022580 Rhpn1 ENSMUST00000229843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022580 Rhpn1 ENSMUST00000229182 - NO_TRANSLATION retained_intron ENSMUSG00000022580 Rhpn1 ENSMUST00000124749 - NO_TRANSLATION retained_intron ENSMUSG00000022580 Rhpn1 ENSMUST00000121137 ENSMUSP00000113042 TRANSLATION protein_coding - CCDS49641.1 1 661.0 0.0 10.834 1.1 407.9 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000022580 Rhpn1 ENSMUST00000149407 ENSMUSP00000116837 TRANSLATION nonsense_mediated_decay - - 2 451.0 0.0 6.84 0.0 327.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000050164 Mchr1 ENSMUST00000166855 ENSMUSP00000126191 TRANSLATION protein_coding - CCDS49675.1 1 353.0 0.0 1.1875 8.9 152.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022999 Lmbr1l ENSMUST00000128818 - NO_TRANSLATION retained_intron ENSMUSG00000022999 Lmbr1l ENSMUST00000109127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022999 Lmbr1l ENSMUST00000123950 - NO_TRANSLATION retained_intron ENSMUSG00000022999 Lmbr1l ENSMUST00000231087 - NO_TRANSLATION retained_intron ENSMUSG00000022999 Lmbr1l ENSMUST00000023736 ENSMUSP00000023736 TRANSLATION protein_coding - CCDS27811.1 1 489.0 0.0 0.0 14.8 300.8 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000022999 Lmbr1l ENSMUST00000127548 - NO_TRANSLATION retained_intron ENSMUSG00000022999 Lmbr1l ENSMUST00000135051 - NO_TRANSLATION retained_intron ENSMUSG00000022999 Lmbr1l ENSMUST00000126159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051359 Ncald ENSMUST00000226924 - NO_TRANSLATION retained_intron ENSMUSG00000051359 Ncald ENSMUST00000123317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051359 Ncald ENSMUST00000090150 ENSMUSP00000087611 TRANSLATION protein_coding - CCDS27435.1 1 193.0 22.0 3.948 36.9 96.8 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000051359 Ncald ENSMUST00000116445 ENSMUSP00000112146 TRANSLATION protein_coding - CCDS27435.1 3 193.0 22.0 3.948 36.9 96.8 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000051359 Ncald ENSMUST00000119730 ENSMUSP00000113858 TRANSLATION protein_coding - CCDS27435.1 1 193.0 22.0 3.948 36.9 96.8 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000051359 Ncald ENSMUST00000168992 ENSMUSP00000130126 TRANSLATION protein_coding - CCDS27435.1 5 193.0 22.0 3.948 36.9 96.8 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000051359 Ncald ENSMUST00000132423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051359 Ncald ENSMUST00000153775 ENSMUSP00000114576 TRANSLATION protein_coding stop - 5 187.0 22.0 3.75 0.0 96.8 0.0 -4,-5 0.0431 7 -2.0 MINOR ENSMUSG00000051359 Ncald ENSMUST00000150453 ENSMUSP00000119726 TRANSLATION protein_coding stop - 3 88.0 6.0 1.0 0.0 30.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000051359 Ncald ENSMUST00000137944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051359 Ncald ENSMUST00000148652 ENSMUSP00000121460 TRANSLATION protein_coding stop - 3 161.0 17.0 3.0 0.0 79.2 0.0 -4,-5 0.0011 7 -2.0 MINOR ENSMUSG00000051359 Ncald ENSMUST00000120746 ENSMUSP00000112898 TRANSLATION protein_coding - CCDS27435.1 1 193.0 22.0 3.948 36.9 96.8 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000037570 Mcrs1 ENSMUST00000229926 ENSMUSP00000154847 TRANSLATION protein_coding stop - - 133.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037570 Mcrs1 ENSMUST00000229143 - NO_TRANSLATION retained_intron ENSMUSG00000037570 Mcrs1 ENSMUST00000163506 ENSMUSP00000131407 TRANSLATION protein_coding - CCDS49728.1 1 449.0 0.0 0.0 13.3 338.0 0.0 -4,-5 0.9577 6 5.7 ALTERNATIVE:1 ENSMUSG00000037570 Mcrs1 ENSMUST00000229656 - NO_TRANSLATION retained_intron ENSMUSG00000037570 Mcrs1 ENSMUST00000229671 ENSMUSP00000155008 TRANSLATION protein_coding stop - - 88.0 0.0 0.0 0.0 96.7 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000037570 Mcrs1 ENSMUST00000229359 ENSMUSP00000155541 TRANSLATION protein_coding stop - - 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037570 Mcrs1 ENSMUST00000231020 - NO_TRANSLATION retained_intron ENSMUSG00000037570 Mcrs1 ENSMUST00000229399 ENSMUSP00000155583 TRANSLATION nonsense_mediated_decay start - - 135.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037570 Mcrs1 ENSMUST00000230444 - NO_TRANSLATION retained_intron ENSMUSG00000037570 Mcrs1 ENSMUST00000041190 ENSMUSP00000043901 TRANSLATION protein_coding - CCDS37199.1 1 462.0 0.0 0.0 14.3 338.0 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:4 ENSMUSG00000016028 Celsr1 ENSMUST00000016172 ENSMUSP00000016172 TRANSLATION protein_coding - CCDS37172.1 1 3034.0 83.0 10.511 0.0 1274.8 8.0 0,-3 1.0 22 18.0 PRINCIPAL:1 ENSMUSG00000016028 Celsr1 ENSMUST00000239396 ENSMUSP00000159344 TRANSLATION protein_coding start - - 133.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000016028 Celsr1 ENSMUST00000239489 ENSMUSP00000159353 TRANSLATION protein_coding start - - 201.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000016028 Celsr1 ENSMUST00000227450 - NO_TRANSLATION retained_intron ENSMUSG00000016028 Celsr1 ENSMUST00000226204 ENSMUSP00000154168 TRANSLATION protein_coding start/stop - - 279.0 0.0 0.9 0.0 0.0 2.0 -1,-4 0.0007 3 -2.0 MINOR ENSMUSG00000016028 Celsr1 ENSMUST00000226840 ENSMUSP00000153927 TRANSLATION protein_coding start - - 1672.0 3.0 10.261 0.0 736.6 8.0 -4,-5 0.1619 14 -2.0 MINOR ENSMUSG00000045631 Tmprss12 ENSMUST00000096200 ENSMUSP00000093914 TRANSLATION protein_coding - CCDS49732.1 1 336.0 3.0 2.7 0.0 203.3 0.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000045631 Tmprss12 ENSMUST00000230901 - NO_TRANSLATION retained_intron ENSMUSG00000022455 Wbp2nl ENSMUST00000023089 ENSMUSP00000023089 TRANSLATION protein_coding - CCDS37158.1 1 359.0 0.0 4.35 0.0 33.7 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000050014 Apol10b ENSMUST00000089465 ENSMUSP00000086890 TRANSLATION protein_coding - CCDS37128.2 1 334.0 0.0 0.0 0.0 287.1 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062683 Atp5mc2 ENSMUST00000185641 ENSMUSP00000140414 TRANSLATION protein_coding - CCDS27888.1 1 146.0 0.0 2.0 30.9 44.0 1.0 -4,0 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000062683 Atp5mc2 ENSMUST00000186952 ENSMUSP00000141008 TRANSLATION protein_coding stop - 3 31.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000062683 Atp5mc2 ENSMUST00000075630 ENSMUSP00000075057 TRANSLATION protein_coding - CCDS27888.1 1 146.0 0.0 2.0 30.9 44.0 1.0 -4,0 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000062683 Atp5mc2 ENSMUST00000187160 ENSMUSP00000140323 TRANSLATION protein_coding start - 2 107.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000121576 ENSMUSG00000121576 ENSMUST00000249249 ENSMUSP00000159629 TRANSLATION protein_coding - - - 24.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000072235 Tuba1a ENSMUST00000097014 ENSMUSP00000094778 TRANSLATION protein_coding - CCDS37196.1 1 451.0 27.0 3.0 34.9 404.9 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000022337 Emc2 ENSMUST00000228864 - NO_TRANSLATION retained_intron ENSMUSG00000022337 Emc2 ENSMUST00000227055 - NO_TRANSLATION retained_intron ENSMUSG00000022337 Emc2 ENSMUST00000022962 ENSMUSP00000022962 TRANSLATION protein_coding - CCDS27453.1 1 297.0 0.0 8.3 30.7 31.9 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022369 Mtbp ENSMUST00000169667 ENSMUSP00000128615 TRANSLATION protein_coding - - 1 521.0 5.0 0.0 0.0 754.2 0.0 -4,-5 0.0598 3 5.0 MINOR ENSMUSG00000022369 Mtbp ENSMUST00000022998 ENSMUSP00000022998 TRANSLATION protein_coding - CCDS27478.1 1 894.0 5.0 0.0 0.1 1302.0 0.0 -4,-5 1.0 3 11.0 PRINCIPAL:1 ENSMUSG00000022369 Mtbp ENSMUST00000169517 ENSMUSP00000131887 TRANSLATION nonsense_mediated_decay start - 5 30.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022369 Mtbp ENSMUST00000170046 ENSMUSP00000129396 TRANSLATION protein_coding - CCDS49609.1 1 629.0 0.0 0.0 0.0 899.3 0.0 -4,-5 0.13 1 0.0 MINOR ENSMUSG00000022369 Mtbp ENSMUST00000171146 - NO_TRANSLATION retained_intron ENSMUSG00000022369 Mtbp ENSMUST00000166449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022582 Ly6g ENSMUST00000190262 ENSMUSP00000140173 TRANSLATION protein_coding - CCDS79377.1 5 134.0 0.0 2.0 0.1 61.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022582 Ly6g ENSMUST00000023246 ENSMUSP00000023246 TRANSLATION protein_coding start - 5 111.0 0.0 2.0 0.0 61.6 0.0 -4,-5 0.0151 - -2.0 MINOR ENSMUSG00000050846 Zfp623 ENSMUST00000037260 ENSMUSP00000036049 TRANSLATION protein_coding - CCDS27556.1 1 499.0 51.0 1.0 1.1 270.5 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000022200 Golph3 ENSMUST00000227895 - NO_TRANSLATION retained_intron ENSMUSG00000022200 Golph3 ENSMUST00000226517 ENSMUSP00000153929 TRANSLATION protein_coding - - - 81.0 0.0 0.4 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000022200 Golph3 ENSMUST00000059680 ENSMUSP00000057375 TRANSLATION protein_coding - CCDS27389.1 1 298.0 0.0 3.73 30.0 204.3 0.0 -4,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022200 Golph3 ENSMUST00000228671 ENSMUSP00000154500 TRANSLATION protein_coding - - - 162.0 0.0 2.4 0.0 109.0 0.0 -4,-2 0.0 3 3.624 MINOR ENSMUSG00000022200 Golph3 ENSMUST00000228301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022234 Cct5 ENSMUST00000161266 ENSMUSP00000125566 TRANSLATION protein_coding stop - 2 199.0 13.0 3.5 0.0 218.8 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000022234 Cct5 ENSMUST00000160174 - NO_TRANSLATION retained_intron ENSMUSG00000022234 Cct5 ENSMUST00000159449 - NO_TRANSLATION retained_intron ENSMUSG00000022234 Cct5 ENSMUST00000159121 - NO_TRANSLATION retained_intron ENSMUSG00000022234 Cct5 ENSMUST00000022842 ENSMUSP00000022842 TRANSLATION protein_coding - CCDS27411.1 1 541.0 23.0 10.5 34.9 525.8 0.0 -4,-5 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000037525 Bcdin3d ENSMUST00000229827 - NO_TRANSLATION retained_intron ENSMUSG00000037525 Bcdin3d ENSMUST00000040313 ENSMUSP00000041809 TRANSLATION protein_coding - CCDS37202.1 1 285.0 17.0 1.8 0.1 74.6 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000003970 Rpl8 ENSMUST00000229591 - NO_TRANSLATION retained_intron ENSMUSG00000003970 Rpl8 ENSMUST00000229183 ENSMUSP00000155657 TRANSLATION protein_coding - CCDS27595.1 - 257.0 0.0 5.0 0.0 231.7 0.0 -4,-2 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000003970 Rpl8 ENSMUST00000004072 ENSMUSP00000004072 TRANSLATION protein_coding - CCDS27595.1 1 257.0 0.0 5.0 0.0 231.7 0.0 -4,-2 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000116336 Gm49425 ENSMUST00000230067 ENSMUSP00000155398 TRANSLATION protein_coding - - - 507.0 0.0 4.67 11.0 373.8 0.0 -4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000042292 Mrtfa ENSMUST00000239114 ENSMUSP00000159052 TRANSLATION protein_coding - - - 1029.0 0.0 3.25 0.0 139.1 0.0 -4,-7 0.2503 14 8.0 ALTERNATIVE:2 ENSMUSG00000042292 Mrtfa ENSMUST00000149582 ENSMUSP00000117745 TRANSLATION protein_coding - CCDS49674.1 1 929.0 0.0 2.75 0.1 109.9 0.0 -4,-2 0.1431 11 6.398 MINOR ENSMUSG00000042292 Mrtfa ENSMUST00000239267 ENSMUSP00000159228 TRANSLATION protein_coding stop - - 108.0 0.0 1.0 0.0 29.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042292 Mrtfa ENSMUST00000131235 ENSMUSP00000120116 TRANSLATION protein_coding - - 5 979.0 0.0 3.25 0.0 139.1 0.0 -4,-7 0.2449 14 8.0 ALTERNATIVE:2 ENSMUSG00000042292 Mrtfa ENSMUST00000154797 - NO_TRANSLATION retained_intron ENSMUSG00000042292 Mrtfa ENSMUST00000123243 - NO_TRANSLATION retained_intron ENSMUSG00000042292 Mrtfa ENSMUST00000145779 - NO_TRANSLATION retained_intron ENSMUSG00000042292 Mrtfa ENSMUST00000109579 ENSMUSP00000105207 TRANSLATION protein_coding - CCDS37147.1 1 964.0 0.0 3.25 0.4 139.1 0.0 -4,-7 1.0 13 8.0 PRINCIPAL:2 ENSMUSG00000042292 Mrtfa ENSMUST00000147921 - NO_TRANSLATION retained_intron ENSMUSG00000042292 Mrtfa ENSMUST00000138769 - NO_TRANSLATION retained_intron ENSMUSG00000042292 Mrtfa ENSMUST00000135047 ENSMUSP00000118451 TRANSLATION protein_coding stop - 1 705.0 0.0 2.75 0.0 109.9 0.0 -4,-2 0.0058 11 -2.0 MINOR ENSMUSG00000042292 Mrtfa ENSMUST00000134469 ENSMUSP00000119530 TRANSLATION protein_coding - - 5 1029.0 0.0 3.25 0.0 139.1 0.0 -4,-7 0.2503 14 8.0 ALTERNATIVE:2 ENSMUSG00000034634 Ly6d ENSMUST00000040404 ENSMUSP00000047419 TRANSLATION protein_coding - CCDS27531.1 1 127.0 0.0 1.0 0.4 35.6 0.0 4,-1 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000018040 Rrp7a ENSMUST00000018184 ENSMUSP00000018184 TRANSLATION protein_coding - CCDS27696.1 1 280.0 0.0 1.35 6.7 129.6 0.0 -4,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000018040 Rrp7a ENSMUST00000167483 ENSMUSP00000128380 TRANSLATION nonsense_mediated_decay - - 3 163.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000018040 Rrp7a ENSMUST00000166766 ENSMUSP00000127001 TRANSLATION nonsense_mediated_decay start - 5 51.0 0.0 1.35 0.0 63.7 0.0 -4,-2 0.0247 - -2.0 MINOR ENSMUSG00000018040 Rrp7a ENSMUST00000167589 - NO_TRANSLATION retained_intron ENSMUSG00000018040 Rrp7a ENSMUST00000166019 ENSMUSP00000129142 TRANSLATION protein_coding stop - 2 145.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000097221 1810049J17Rik ENSMUST00000180521 ENSMUSP00000137703 TRANSLATION protein_coding start - - 153.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.6273 - -2.0 PRINCIPAL:1 ENSMUSG00000006369 Fbln1 ENSMUST00000057410 ENSMUSP00000054583 TRANSLATION protein_coding - CCDS27719.1 1 705.0 54.0 6.906 8.4 279.0 0.0 3,-1 1.0 14 17.0 PRINCIPAL:3 ENSMUSG00000006369 Fbln1 ENSMUST00000160798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006369 Fbln1 ENSMUST00000109432 ENSMUSP00000105058 TRANSLATION protein_coding - CCDS84186.1 1 685.0 54.0 6.64 7.5 279.0 0.0 3,-1 0.9019 9 16.1 ALTERNATIVE:1 ENSMUSG00000094447 9430069I07Rik ENSMUST00000179647 ENSMUSP00000136383 TRANSLATION protein_coding - CCDS56978.1 5 111.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.8748 - 0.0 PRINCIPAL:1 ENSMUSG00000094447 9430069I07Rik ENSMUST00000227772 ENSMUSP00000154567 TRANSLATION protein_coding - CCDS56978.1 - 111.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.8748 - 0.0 PRINCIPAL:1 ENSMUSG00000043091 Tuba1c ENSMUST00000230447 - NO_TRANSLATION retained_intron ENSMUSG00000043091 Tuba1c ENSMUST00000058914 ENSMUSP00000051033 TRANSLATION protein_coding - CCDS37198.1 1 449.0 27.0 3.0 30.5 404.8 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000033029 1700088E04Rik ENSMUST00000190959 ENSMUSP00000140347 TRANSLATION protein_coding - CCDS27633.1 5 216.0 0.0 0.0 8.6 297.7 0.0 -4,-6 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000033029 1700088E04Rik ENSMUST00000188562 ENSMUSP00000139947 TRANSLATION protein_coding - - 3 43.0 0.0 0.0 0.0 58.5 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000033029 1700088E04Rik ENSMUST00000187550 ENSMUSP00000140978 TRANSLATION protein_coding - CCDS79388.1 1 155.0 0.0 0.0 0.0 161.3 0.0 -4,-6 0.0246 2 0.0 MINOR ENSMUSG00000033029 1700088E04Rik ENSMUST00000190509 ENSMUSP00000140611 TRANSLATION protein_coding - CCDS79387.1 5 195.0 0.0 0.0 2.0 214.4 0.0 -4,-6 0.0734 2 1.398 MINOR ENSMUSG00000033029 1700088E04Rik ENSMUST00000186559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033029 1700088E04Rik ENSMUST00000189761 ENSMUSP00000139736 TRANSLATION nonsense_mediated_decay - - 1 55.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033029 1700088E04Rik ENSMUST00000186053 ENSMUSP00000140261 TRANSLATION protein_coding - - 1 59.0 0.0 0.0 0.0 71.4 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000033029 1700088E04Rik ENSMUST00000169604 ENSMUSP00000129244 TRANSLATION protein_coding - CCDS27633.1 1 216.0 0.0 0.0 8.6 297.7 0.0 -4,-6 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000033029 1700088E04Rik ENSMUST00000191006 ENSMUSP00000141129 TRANSLATION protein_coding start - 3 18.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033029 1700088E04Rik ENSMUST00000185944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033029 1700088E04Rik ENSMUST00000186459 ENSMUSP00000139974 TRANSLATION nonsense_mediated_decay - - 3 64.0 0.0 0.0 0.0 23.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033029 1700088E04Rik ENSMUST00000190730 ENSMUSP00000139884 TRANSLATION protein_coding - CCDS79388.1 1 155.0 0.0 0.0 0.0 161.3 0.0 -4,-6 0.0246 2 0.0 MINOR ENSMUSG00000033029 1700088E04Rik ENSMUST00000190400 ENSMUSP00000141080 TRANSLATION protein_coding start - 3 58.0 0.0 0.0 0.0 71.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038622 Med30 ENSMUST00000228053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038622 Med30 ENSMUST00000037115 ENSMUSP00000042204 TRANSLATION protein_coding - CCDS27465.1 1 178.0 0.0 2.0 24.3 216.3 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000045665 Mfsd5 ENSMUST00000051341 ENSMUSP00000061997 TRANSLATION protein_coding - CCDS27877.1 1 450.0 0.0 0.0 18.3 272.3 0.0 3,-3 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000038736 Nudcd1 ENSMUST00000227645 - NO_TRANSLATION retained_intron ENSMUSG00000038736 Nudcd1 ENSMUST00000227789 - NO_TRANSLATION retained_intron ENSMUSG00000038736 Nudcd1 ENSMUST00000038719 ENSMUSP00000042746 TRANSLATION protein_coding - - 1 581.0 0.0 0.532 18.5 59.6 0.0 -4,-7 0.8552 16 11.38 ALTERNATIVE:1 ENSMUSG00000038736 Nudcd1 ENSMUST00000226660 - NO_TRANSLATION retained_intron ENSMUSG00000038736 Nudcd1 ENSMUST00000228319 - NO_TRANSLATION retained_intron ENSMUSG00000038736 Nudcd1 ENSMUST00000226606 ENSMUSP00000154284 TRANSLATION nonsense_mediated_decay - - - 43.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038736 Nudcd1 ENSMUST00000227843 ENSMUSP00000154478 TRANSLATION protein_coding - CCDS27455.1 - 582.0 0.0 0.532 21.7 59.6 0.0 -4,-7 1.0 16 12.0 PRINCIPAL:4 ENSMUSG00000042622 Maff ENSMUST00000096350 ENSMUSP00000094076 TRANSLATION protein_coding - CCDS27638.1 1 156.0 0.0 1.8 12.0 114.4 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000042622 Maff ENSMUST00000229130 ENSMUSP00000154850 TRANSLATION protein_coding - CCDS27638.1 - 156.0 0.0 1.8 12.0 114.4 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000042622 Maff ENSMUST00000229285 ENSMUSP00000155516 TRANSLATION protein_coding stop - - 101.0 0.0 1.0 0.0 101.5 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000042622 Maff ENSMUST00000163691 ENSMUSP00000131628 TRANSLATION protein_coding - CCDS27638.1 1 156.0 0.0 1.8 12.0 114.4 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000022487 Gtsf1 ENSMUST00000141364 ENSMUSP00000119234 TRANSLATION protein_coding - CCDS49744.1 5 167.0 6.0 3.38 11.8 76.2 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000022487 Gtsf1 ENSMUST00000153930 ENSMUSP00000114244 TRANSLATION protein_coding - CCDS49744.1 5 167.0 6.0 3.38 11.8 76.2 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000022487 Gtsf1 ENSMUST00000146736 ENSMUSP00000115670 TRANSLATION protein_coding start - 3 194.0 6.0 3.38 0.0 76.2 0.0 -4,-5 0.0089 1 -2.0 MINOR ENSMUSG00000022487 Gtsf1 ENSMUST00000147389 ENSMUSP00000120797 TRANSLATION protein_coding stop - 3 161.0 6.0 3.38 0.0 76.2 0.0 -4,-5 0.0205 1 -2.0 MINOR ENSMUSG00000022487 Gtsf1 ENSMUST00000123724 ENSMUSP00000114733 TRANSLATION protein_coding - - 5 186.0 6.0 3.38 0.0 76.2 0.0 -4,-5 0.0111 1 18.0 MINOR ENSMUSG00000022487 Gtsf1 ENSMUST00000023129 ENSMUSP00000023129 TRANSLATION protein_coding - CCDS49744.1 1 167.0 6.0 3.38 11.8 76.2 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000022487 Gtsf1 ENSMUST00000136480 ENSMUSP00000116366 TRANSLATION protein_coding - CCDS49744.1 2 167.0 6.0 3.38 11.8 76.2 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000022487 Gtsf1 ENSMUST00000146675 ENSMUSP00000122193 TRANSLATION protein_coding - CCDS49744.1 5 167.0 6.0 3.38 11.8 76.2 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000022487 Gtsf1 ENSMUST00000129837 ENSMUSP00000115123 TRANSLATION protein_coding stop - 5 127.0 6.0 3.38 0.0 76.2 0.0 -4,-5 0.0094 1 -2.0 MINOR ENSMUSG00000044361 BC024139 ENSMUST00000126892 - NO_TRANSLATION retained_intron ENSMUSG00000044361 BC024139 ENSMUST00000089654 ENSMUSP00000087082 TRANSLATION protein_coding - - 1 737.0 0.0 0.75 0.0 37.0 0.0 -4,-2 0.8157 - 6.0 PRINCIPAL:4 ENSMUSG00000044361 BC024139 ENSMUST00000226663 - NO_TRANSLATION retained_intron ENSMUSG00000044361 BC024139 ENSMUST00000054022 ENSMUSP00000053305 TRANSLATION protein_coding - CCDS49643.1 1 772.0 0.0 0.75 0.1 37.8 0.0 -4,-2 0.6308 - 6.0 ALTERNATIVE:2 ENSMUSG00000044361 BC024139 ENSMUST00000146157 ENSMUSP00000117783 TRANSLATION nonsense_mediated_decay - - 1 597.0 0.0 0.0 0.1 0.0 0.0 -4,-2 0.0085 - -2.0 MINOR ENSMUSG00000041736 Tspo ENSMUST00000208463 ENSMUSP00000146965 TRANSLATION protein_coding stop - 3 102.0 0.0 2.0 0.0 92.2 3.0 -3,-5 0.0022 - -2.0 MINOR ENSMUSG00000041736 Tspo ENSMUST00000047419 ENSMUSP00000037039 TRANSLATION protein_coding - CCDS27705.1 1 169.0 0.0 3.0 13.3 154.1 5.0 -3,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022387 Brd1 ENSMUST00000156155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022387 Brd1 ENSMUST00000139515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022387 Brd1 ENSMUST00000109380 ENSMUSP00000105006 TRANSLATION protein_coding - - 5 1058.0 18.0 5.6 21.6 434.0 0.0 -4,-1 0.9808 15 18.0 ALTERNATIVE:1 ENSMUSG00000022387 Brd1 ENSMUST00000088911 - NO_TRANSLATION retained_intron ENSMUSG00000022387 Brd1 ENSMUST00000109381 ENSMUSP00000105007 TRANSLATION protein_coding - CCDS27730.2 5 1189.0 18.0 5.6 18.7 434.0 0.0 -4,-1 1.0 17 17.436 PRINCIPAL:3 ENSMUSG00000022387 Brd1 ENSMUST00000150004 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094814 Gm21973 ENSMUST00000157020 ENSMUSP00000120297 TRANSLATION nonsense_mediated_decay,RT start - 3 68.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.6691 - -2.0 PRINCIPAL:1 ENSMUSG00000022483 Col2a1 ENSMUST00000131560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022483 Col2a1 ENSMUST00000230148 - NO_TRANSLATION retained_intron ENSMUSG00000022483 Col2a1 ENSMUST00000127879 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022483 Col2a1 ENSMUST00000131910 - NO_TRANSLATION retained_intron ENSMUSG00000022483 Col2a1 ENSMUST00000023123 ENSMUSP00000023123 TRANSLATION protein_coding - CCDS37189.2 1 1487.0 0.0 32.998 19.1 669.1 0.0 4,-1 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000022483 Col2a1 ENSMUST00000139246 - NO_TRANSLATION retained_intron ENSMUSG00000022483 Col2a1 ENSMUST00000140064 - NO_TRANSLATION retained_intron ENSMUSG00000022483 Col2a1 ENSMUST00000133488 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022483 Col2a1 ENSMUST00000088355 ENSMUSP00000085693 TRANSLATION protein_coding - CCDS49716.1 1 1419.0 0.0 31.998 8.6 621.4 0.0 4,-1 0.6894 12 8.82 MINOR ENSMUSG00000022483 Col2a1 ENSMUST00000128547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033220 Rac2 ENSMUST00000043214 ENSMUSP00000036384 TRANSLATION protein_coding - CCDS27619.1 1 192.0 23.0 5.5 36.9 181.6 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000033220 Rac2 ENSMUST00000230952 ENSMUSP00000155090 TRANSLATION protein_coding start - - 80.0 7.0 2.0 0.0 29.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033220 Rac2 ENSMUST00000229394 ENSMUSP00000154826 TRANSLATION nonsense_mediated_decay - - - 36.0 8.0 1.25 0.0 41.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042406 Atf4 ENSMUST00000109605 ENSMUSP00000105234 TRANSLATION protein_coding - CCDS37145.1 1 349.0 0.0 0.6 8.3 62.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000042406 Atf4 ENSMUST00000229828 ENSMUSP00000155806 TRANSLATION protein_coding stop - - 116.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042406 Atf4 ENSMUST00000230434 - NO_TRANSLATION retained_intron ENSMUSG00000071715 Ncf4 ENSMUST00000146147 - NO_TRANSLATION retained_intron ENSMUSG00000071715 Ncf4 ENSMUST00000148646 - NO_TRANSLATION retained_intron ENSMUSG00000071715 Ncf4 ENSMUST00000096357 ENSMUSP00000094084 TRANSLATION protein_coding - CCDS27610.1 1 339.0 0.0 7.98 11.0 186.2 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000071715 Ncf4 ENSMUST00000126028 - NO_TRANSLATION retained_intron ENSMUSG00000071715 Ncf4 ENSMUST00000133618 ENSMUSP00000121191 TRANSLATION protein_coding stop - 5 252.0 0.0 6.23 0.0 118.7 0.0 -4,-5 0.0003 7 -2.0 MINOR ENSMUSG00000071715 Ncf4 ENSMUST00000147303 - NO_TRANSLATION retained_intron ENSMUSG00000010830 Kdelr3 ENSMUST00000010974 ENSMUSP00000010974 TRANSLATION protein_coding - CCDS27642.1 1 214.0 0.0 4.5 36.9 179.1 0.0 -1,-4 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022416 Cacna1i ENSMUST00000160424 ENSMUSP00000125063 TRANSLATION protein_coding - CCDS49670.1 1 2199.0 0.0 13.45 0.0 865.7 11.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000022416 Cacna1i ENSMUST00000162025 ENSMUSP00000125530 TRANSLATION protein_coding start/stop - 5 105.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000022416 Cacna1i ENSMUST00000161863 ENSMUSP00000124367 TRANSLATION protein_coding start/stop - 5 132.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000022416 Cacna1i ENSMUST00000160175 ENSMUSP00000123881 TRANSLATION protein_coding start/stop - 5 260.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.001 3 -2.0 MINOR ENSMUSG00000022416 Cacna1i ENSMUST00000162913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022416 Cacna1i ENSMUST00000162155 ENSMUSP00000125229 TRANSLATION nonsense_mediated_decay - - 5 1835.0 0.0 13.45 0.0 865.7 11.0 -4,-5 0.386 8 -2.0 MINOR ENSMUSG00000068117 Mei1 ENSMUST00000229119 ENSMUSP00000154974 TRANSLATION protein_coding start - - 1324.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.2327 - -2.0 MINOR ENSMUSG00000068117 Mei1 ENSMUST00000188048 ENSMUSP00000139689 TRANSLATION protein_coding - CCDS79396.1 1 894.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9307 - 0.0 PRINCIPAL:2 ENSMUSG00000068117 Mei1 ENSMUST00000186125 ENSMUSP00000140309 TRANSLATION nonsense_mediated_decay - - 1 244.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.041 - -2.0 MINOR ENSMUSG00000068117 Mei1 ENSMUST00000189540 ENSMUSP00000140479 TRANSLATION protein_coding - CCDS79396.1 1 894.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9307 - 0.0 PRINCIPAL:2 ENSMUSG00000068117 Mei1 ENSMUST00000089178 ENSMUSP00000086582 TRANSLATION protein_coding - - 5 1268.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.2181 - 0.0 ALTERNATIVE:2 ENSMUSG00000064210 Ano6 ENSMUST00000226936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064210 Ano6 ENSMUST00000227151 ENSMUSP00000153853 TRANSLATION nonsense_mediated_decay - - - 466.0 0.0 7.445 0.0 383.8 4.0 -4,-5 0.0029 12 -2.0 MINOR ENSMUSG00000064210 Ano6 ENSMUST00000227791 ENSMUSP00000153954 TRANSLATION protein_coding - - - 932.0 0.0 14.925 4.6 775.7 7.0 -4,-5 0.9583 20 10.0 ALTERNATIVE:1 ENSMUSG00000064210 Ano6 ENSMUST00000226761 - NO_TRANSLATION retained_intron ENSMUSG00000064210 Ano6 ENSMUST00000226682 - NO_TRANSLATION retained_intron ENSMUSG00000064210 Ano6 ENSMUST00000226932 - NO_TRANSLATION retained_intron ENSMUSG00000064210 Ano6 ENSMUST00000071874 ENSMUSP00000071770 TRANSLATION protein_coding - CCDS37184.1 1 911.0 0.0 14.925 3.5 775.7 7.0 -4,-5 1.0 20 9.388 PRINCIPAL:4 ENSMUSG00000064210 Ano6 ENSMUST00000226793 ENSMUSP00000154532 TRANSLATION protein_coding stop - - 193.0 0.0 2.13 0.0 135.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000114755 Galr3 ENSMUST00000058004 ENSMUSP00000060517 TRANSLATION protein_coding - CCDS27631.1 1 370.0 0.0 1.2 1.5 155.6 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000037458 Azin1 ENSMUST00000110329 ENSMUSP00000105958 TRANSLATION protein_coding - CCDS37065.1 2 448.0 14.0 9.68 23.7 352.8 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000037458 Azin1 ENSMUST00000152833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037458 Azin1 ENSMUST00000226152 - NO_TRANSLATION retained_intron ENSMUSG00000037458 Azin1 ENSMUST00000151319 ENSMUSP00000119201 TRANSLATION protein_coding stop - 2 149.0 4.0 4.0 0.0 131.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037458 Azin1 ENSMUST00000065308 ENSMUSP00000065544 TRANSLATION protein_coding - CCDS37065.1 1 448.0 14.0 9.68 23.7 352.8 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000037458 Azin1 ENSMUST00000127848 ENSMUSP00000114831 TRANSLATION protein_coding stop - 5 46.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037458 Azin1 ENSMUST00000110328 ENSMUSP00000105957 TRANSLATION nonsense_mediated_decay start - 5 132.0 3.0 2.55 0.0 143.6 0.0 -2,-4 0.0 - -2.0 MINOR ENSMUSG00000037458 Azin1 ENSMUST00000149293 - NO_TRANSLATION retained_intron ENSMUSG00000037458 Azin1 ENSMUST00000129589 ENSMUSP00000117988 TRANSLATION nonsense_mediated_decay - - 1 154.0 4.0 4.0 0.0 135.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068114 Ccdc134 ENSMUST00000229456 - NO_TRANSLATION retained_intron ENSMUSG00000068114 Ccdc134 ENSMUST00000089174 ENSMUSP00000086578 TRANSLATION protein_coding - CCDS37155.1 1 229.0 0.0 4.62 8.5 223.5 0.0 0,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000068114 Ccdc134 ENSMUST00000229384 ENSMUSP00000155080 TRANSLATION nonsense_mediated_decay - - - 42.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000068114 Ccdc134 ENSMUST00000229411 ENSMUSP00000155805 TRANSLATION nonsense_mediated_decay - - - 110.0 0.0 1.0 0.0 44.5 0.0 0,-3 0.0 1 -2.0 MINOR ENSMUSG00000068114 Ccdc134 ENSMUST00000229788 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068114 Ccdc134 ENSMUST00000229597 ENSMUSP00000155776 TRANSLATION nonsense_mediated_decay - - - 107.0 0.0 1.066 0.0 46.2 0.0 0,-3 0.0 1 -2.0 MINOR ENSMUSG00000068114 Ccdc134 ENSMUST00000230582 - NO_TRANSLATION retained_intron ENSMUSG00000022586 Ly6i ENSMUST00000023250 ENSMUSP00000023250 TRANSLATION protein_coding - CCDS27539.1 1 134.0 0.0 1.6 0.1 65.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022586 Ly6i ENSMUST00000166694 ENSMUSP00000129867 TRANSLATION protein_coding - CCDS27539.1 1 134.0 0.0 1.6 0.1 65.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000014313 Cox6c ENSMUST00000227231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014313 Cox6c ENSMUST00000156915 ENSMUSP00000122391 TRANSLATION protein_coding - CCDS27424.1 5 76.0 0.0 2.08 20.8 132.7 1.0 -2,1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000014313 Cox6c ENSMUST00000155638 ENSMUSP00000121106 TRANSLATION nonsense_mediated_decay start - 3 10.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000014313 Cox6c ENSMUST00000014457 ENSMUSP00000014457 TRANSLATION protein_coding - CCDS27424.1 1 76.0 0.0 2.08 20.8 132.7 1.0 -2,1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000014313 Cox6c ENSMUST00000127999 - NO_TRANSLATION retained_intron ENSMUSG00000014313 Cox6c ENSMUST00000153512 ENSMUSP00000123609 TRANSLATION protein_coding - CCDS27424.1 2 76.0 0.0 2.08 20.8 132.7 1.0 -2,1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000054117 Zdhhc25 ENSMUST00000066949 ENSMUSP00000136289 TRANSLATION protein_coding - CCDS56999.1 - 279.0 6.0 0.64 0.4 105.8 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000000531 Tamalin ENSMUST00000000543 ENSMUSP00000000543 TRANSLATION protein_coding - CCDS27847.1 1 392.0 0.0 4.2 4.2 47.2 0.0 -4,-7 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000057346 Apol9a ENSMUST00000089452 ENSMUSP00000086875 TRANSLATION protein_coding - CCDS49660.1 1 310.0 0.0 0.8 0.1 373.5 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000057346 Apol9a ENSMUST00000231161 ENSMUSP00000155376 TRANSLATION protein_coding stop - - 73.0 0.0 0.8 0.0 68.6 0.0 -4,-6 0.0322 - -2.0 MINOR ENSMUSG00000057346 Apol9a ENSMUST00000081776 ENSMUSP00000080468 TRANSLATION protein_coding - CCDS49660.1 1 310.0 0.0 0.8 0.1 373.5 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000057346 Apol9a ENSMUST00000229175 - NO_TRANSLATION retained_intron ENSMUSG00000047565 Acot10 ENSMUST00000052910 ENSMUSP00000051333 TRANSLATION protein_coding - CCDS27395.1 - 439.0 10.0 1.0 5.9 0.0 0.0 -4,0 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000045996 Polr2k ENSMUST00000057177 ENSMUSP00000051968 TRANSLATION protein_coding - CCDS27426.1 1 99.0 5.0 1.93 0.0 62.2 0.0 -4,-5 0.1265 1 17.0 MINOR ENSMUSG00000045996 Polr2k ENSMUST00000180159 ENSMUSP00000136975 TRANSLATION protein_coding - CCDS56980.1 1 58.0 5.0 1.93 36.9 62.2 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000059883 Irak4 ENSMUST00000138306 - NO_TRANSLATION retained_intron ENSMUSG00000059883 Irak4 ENSMUST00000109248 ENSMUSP00000104871 TRANSLATION protein_coding - - 1 453.0 22.0 8.7 0.0 176.7 0.0 -4,-7 0.0934 11 17.244 MINOR ENSMUSG00000059883 Irak4 ENSMUST00000074936 ENSMUSP00000074471 TRANSLATION protein_coding - CCDS27772.1 1 459.0 22.0 9.03 16.5 178.3 0.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000022375 Dnaaf11 ENSMUST00000023006 ENSMUSP00000023006 TRANSLATION protein_coding - CCDS49620.1 1 473.0 0.0 2.27 8.0 0.0 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000000532 Acvr1b ENSMUST00000000544 ENSMUSP00000000544 TRANSLATION protein_coding - CCDS27846.1 1 505.0 20.0 6.2 10.2 200.7 0.0 1,-2 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000047888 Tnrc6b ENSMUST00000226857 - NO_TRANSLATION retained_intron ENSMUSG00000047888 Tnrc6b ENSMUST00000228124 ENSMUSP00000154573 TRANSLATION protein_coding start - - 958.0 0.0 1.65 0.0 404.6 0.0 -4,-5 0.0516 12 -2.0 MINOR ENSMUSG00000047888 Tnrc6b ENSMUST00000227449 ENSMUSP00000153748 TRANSLATION protein_coding start/stop - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047888 Tnrc6b ENSMUST00000228071 - NO_TRANSLATION retained_intron ENSMUSG00000047888 Tnrc6b ENSMUST00000227546 - NO_TRANSLATION retained_intron ENSMUSG00000047888 Tnrc6b ENSMUST00000228525 - NO_TRANSLATION retained_intron ENSMUSG00000047888 Tnrc6b ENSMUST00000226442 - NO_TRANSLATION retained_intron ENSMUSG00000047888 Tnrc6b ENSMUST00000226461 - NO_TRANSLATION retained_intron ENSMUSG00000047888 Tnrc6b ENSMUST00000228320 - NO_TRANSLATION retained_intron ENSMUSG00000047888 Tnrc6b ENSMUST00000067689 ENSMUSP00000064336 TRANSLATION protein_coding - CCDS37146.1 5 1810.0 0.0 1.65 1.4 441.3 0.0 -4,-5 1.0 38 13.0 PRINCIPAL:1 ENSMUSG00000079105 C7 ENSMUST00000110689 ENSMUSP00000106317 TRANSLATION protein_coding - CCDS56974.1 5 845.0 9.0 14.15 1.4 267.4 0.0 3,-2 1.0 19 19.0 PRINCIPAL:1 ENSMUSG00000049687 Pheta2 ENSMUST00000161178 ENSMUSP00000124703 TRANSLATION protein_coding - CCDS27687.1 1 259.0 0.0 0.5 0.0 43.1 0.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000049687 Pheta2 ENSMUST00000159942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049687 Pheta2 ENSMUST00000162983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049687 Pheta2 ENSMUST00000050349 ENSMUSP00000060598 TRANSLATION protein_coding - CCDS27687.1 1 259.0 0.0 0.5 0.0 43.1 0.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000048154 Kmt2d ENSMUST00000184363 ENSMUSP00000139020 TRANSLATION protein_coding start/stop - 3 250.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.001 1 -2.0 MINOR ENSMUSG00000048154 Kmt2d ENSMUST00000178486 ENSMUSP00000135941 TRANSLATION protein_coding - - 5 5588.0 51.0 13.332 0.0 375.9 0.0 -4,-5 0.7941 46 14.0 ALTERNATIVE:2 ENSMUSG00000048154 Kmt2d ENSMUST00000191973 ENSMUSP00000142312 TRANSLATION protein_coding start - 3 233.0 19.0 3.75 0.0 72.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000048154 Kmt2d ENSMUST00000229651 ENSMUSP00000154984 TRANSLATION nonsense_mediated_decay start - - 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0349 - -2.0 MINOR ENSMUSG00000048154 Kmt2d ENSMUST00000023741 ENSMUSP00000023741 TRANSLATION protein_coding - CCDS49725.2 5 5588.0 50.0 13.332 0.0 375.9 0.0 -4,-5 1.0 46 13.334 PRINCIPAL:4 ENSMUSG00000023034 Nr4a1 ENSMUST00000023779 ENSMUSP00000023779 TRANSLATION protein_coding - CCDS27848.1 1 601.0 8.0 4.8 7.8 211.7 0.0 -4,-6 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000023034 Nr4a1 ENSMUST00000230814 ENSMUSP00000155056 TRANSLATION protein_coding stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023034 Nr4a1 ENSMUST00000231153 - NO_TRANSLATION retained_intron ENSMUSG00000023034 Nr4a1 ENSMUST00000228985 ENSMUSP00000155225 TRANSLATION protein_coding - CCDS27848.1 - 601.0 8.0 4.8 7.8 211.7 0.0 -4,-6 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000059586 Nsmce2 ENSMUST00000079703 ENSMUSP00000078641 TRANSLATION protein_coding - CCDS27498.1 1 247.0 4.0 2.2 9.6 65.3 0.0 -4,-1 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000059586 Nsmce2 ENSMUST00000227173 ENSMUSP00000154811 TRANSLATION protein_coding - - - 273.0 4.0 2.2 5.0 65.3 0.0 -4,-1 0.5675 1 17.395 MINOR ENSMUSG00000059586 Nsmce2 ENSMUST00000168722 ENSMUSP00000128893 TRANSLATION protein_coding - CCDS49611.1 1 139.0 0.0 0.0 0.4 0.0 0.0 -4,-1 0.0289 1 0.0 MINOR ENSMUSG00000018008 Cyth4 ENSMUST00000229256 ENSMUSP00000155122 TRANSLATION nonsense_mediated_decay - - - 39.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000018008 Cyth4 ENSMUST00000231176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018008 Cyth4 ENSMUST00000231168 ENSMUSP00000155690 TRANSLATION nonsense_mediated_decay - - - 184.0 0.0 4.66 0.0 137.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000018008 Cyth4 ENSMUST00000230583 - NO_TRANSLATION retained_intron ENSMUSG00000018008 Cyth4 ENSMUST00000229717 ENSMUSP00000155352 TRANSLATION nonsense_mediated_decay - - - 54.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000018008 Cyth4 ENSMUST00000229233 - NO_TRANSLATION retained_intron ENSMUSG00000018008 Cyth4 ENSMUST00000043069 ENSMUSP00000042698 TRANSLATION protein_coding - CCDS27620.1 1 393.0 12.0 9.91 25.9 306.3 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000018008 Cyth4 ENSMUST00000231180 ENSMUSP00000154995 TRANSLATION protein_coding - - - 56.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000018008 Cyth4 ENSMUST00000229796 ENSMUSP00000155451 TRANSLATION protein_coding stop - - 60.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018008 Cyth4 ENSMUST00000230705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018008 Cyth4 ENSMUST00000229295 ENSMUSP00000155432 TRANSLATION protein_coding stop - - 66.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000018008 Cyth4 ENSMUST00000230041 - NO_TRANSLATION retained_intron ENSMUSG00000018008 Cyth4 ENSMUST00000229248 ENSMUSP00000155708 TRANSLATION nonsense_mediated_decay - - - 66.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000098678 Mroh6 ENSMUST00000184858 ENSMUSP00000139029 TRANSLATION protein_coding - CCDS70637.1 5 722.0 0.0 0.0 2.3 0.0 0.0 -2,-5 0.9817 1 1.0 PRINCIPAL:1 ENSMUSG00000058600 Rpl30 ENSMUST00000140527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058600 Rpl30 ENSMUST00000136653 - NO_TRANSLATION retained_intron ENSMUSG00000058600 Rpl30 ENSMUST00000142643 ENSMUSP00000154172 TRANSLATION protein_coding - - 2 94.0 0.0 2.5 7.2 84.1 0.0 -4,-7 0.1512 5 11.1 MINOR ENSMUSG00000058600 Rpl30 ENSMUST00000079735 ENSMUSP00000106014 TRANSLATION protein_coding - CCDS37057.1 1 115.0 0.0 3.165 29.7 90.6 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000058600 Rpl30 ENSMUST00000009039 ENSMUSP00000009039 TRANSLATION protein_coding - CCDS37057.1 1 115.0 0.0 3.165 29.7 90.6 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000058600 Rpl30 ENSMUST00000135417 - NO_TRANSLATION retained_intron ENSMUSG00000022412 Mief1 ENSMUST00000228965 - NO_TRANSLATION retained_intron ENSMUSG00000022412 Mief1 ENSMUST00000166030 ENSMUSP00000129209 TRANSLATION protein_coding - CCDS27661.1 1 463.0 0.0 3.35 0.0 62.9 1.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000022412 Mief1 ENSMUST00000231110 - NO_TRANSLATION retained_intron ENSMUSG00000022412 Mief1 ENSMUST00000229612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022412 Mief1 ENSMUST00000023048 ENSMUSP00000023048 TRANSLATION protein_coding - CCDS27661.1 1 463.0 0.0 3.35 0.0 62.9 1.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000022412 Mief1 ENSMUST00000229138 ENSMUSP00000154875 TRANSLATION protein_coding - CCDS27661.1 - 463.0 0.0 3.35 0.0 62.9 1.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000022412 Mief1 ENSMUST00000228788 ENSMUSP00000154748 TRANSLATION nonsense_mediated_decay - - - 137.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0026 2 -2.0 MINOR ENSMUSG00000022412 Mief1 ENSMUST00000230654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036218 Pdzrn4 ENSMUST00000229577 - NO_TRANSLATION retained_intron ENSMUSG00000036218 Pdzrn4 ENSMUST00000035399 ENSMUSP00000040456 TRANSLATION protein_coding - CCDS49710.1 1 775.0 0.0 3.59 14.2 54.8 0.0 -4,-5 1.0 - 9.31 MINOR ENSMUSG00000036218 Pdzrn4 ENSMUST00000229173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036218 Pdzrn4 ENSMUST00000169942 ENSMUSP00000133159 TRANSLATION protein_coding - CCDS49709.1 1 1014.0 7.0 5.19 0.0 113.0 0.0 -4,-5 0.9956 - 18.0 PRINCIPAL:1 ENSMUSG00000022321 Cdh10 ENSMUST00000176146 ENSMUSP00000135546 TRANSLATION nonsense_mediated_decay - - 5 419.0 35.0 5.5 0.0 170.8 0.0 0,-3 0.0241 6 -2.0 MINOR ENSMUSG00000022321 Cdh10 ENSMUST00000040562 ENSMUSP00000042199 TRANSLATION protein_coding - CCDS37047.1 1 788.0 45.0 9.98 19.2 447.3 1.0 0,-3 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000022321 Cdh10 ENSMUST00000166873 ENSMUSP00000128782 TRANSLATION protein_coding - CCDS37047.1 1 788.0 45.0 9.98 19.2 447.3 1.0 0,-3 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000022321 Cdh10 ENSMUST00000176801 - NO_TRANSLATION retained_intron ENSMUSG00000022321 Cdh10 ENSMUST00000176409 - NO_TRANSLATION retained_intron ENSMUSG00000022321 Cdh10 ENSMUST00000176593 - NO_TRANSLATION retained_intron ENSMUSG00000022553 Maf1 ENSMUST00000023212 ENSMUSP00000023212 TRANSLATION protein_coding - CCDS27568.1 1 258.0 0.0 2.725 15.6 220.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000022553 Maf1 ENSMUST00000160914 ENSMUSP00000124110 TRANSLATION protein_coding stop - 5 142.0 0.0 0.975 0.0 108.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022553 Maf1 ENSMUST00000160853 ENSMUSP00000124893 TRANSLATION protein_coding - CCDS27568.1 1 258.0 0.0 2.725 15.6 220.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000022553 Maf1 ENSMUST00000160069 - NO_TRANSLATION retained_intron ENSMUSG00000022553 Maf1 ENSMUST00000161072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022553 Maf1 ENSMUST00000162871 - NO_TRANSLATION retained_intron ENSMUSG00000022553 Maf1 ENSMUST00000160097 - NO_TRANSLATION retained_intron ENSMUSG00000022553 Maf1 ENSMUST00000161391 - NO_TRANSLATION retained_intron ENSMUSG00000022553 Maf1 ENSMUST00000160857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022553 Maf1 ENSMUST00000162865 - NO_TRANSLATION retained_intron ENSMUSG00000022553 Maf1 ENSMUST00000160875 - NO_TRANSLATION retained_intron ENSMUSG00000022553 Maf1 ENSMUST00000161527 ENSMUSP00000125387 TRANSLATION protein_coding - CCDS27568.1 5 258.0 0.0 2.725 15.6 220.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000022553 Maf1 ENSMUST00000161786 - NO_TRANSLATION retained_intron ENSMUSG00000022553 Maf1 ENSMUST00000160172 ENSMUSP00000124242 TRANSLATION protein_coding - - 5 213.0 0.0 2.725 6.6 220.8 0.0 -4,-5 0.5011 3 13.536 MINOR ENSMUSG00000046897 Zfp740 ENSMUST00000230600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046897 Zfp740 ENSMUST00000230867 ENSMUSP00000155827 TRANSLATION protein_coding - - - 143.0 11.0 3.28 4.1 45.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:2 ENSMUSG00000046897 Zfp740 ENSMUST00000139960 ENSMUSP00000117024 TRANSLATION protein_coding stop - 5 107.0 3.0 1.48 0.0 0.0 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000046897 Zfp740 ENSMUST00000119830 - NO_TRANSLATION retained_intron ENSMUSG00000046897 Zfp740 ENSMUST00000119168 ENSMUSP00000113691 TRANSLATION protein_coding - CCDS79415.1 1 144.0 0.0 0.48 0.0 0.0 0.0 -4,-5 0.1381 2 0.402 MINOR ENSMUSG00000046897 Zfp740 ENSMUST00000229886 ENSMUSP00000155168 TRANSLATION protein_coding stop - - 79.0 0.0 0.48 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000046897 Zfp740 ENSMUST00000119800 ENSMUSP00000113770 TRANSLATION protein_coding - CCDS70672.1 1 180.0 11.0 3.28 0.1 45.7 0.0 -4,-5 0.1789 4 14.0 MINOR ENSMUSG00000046897 Zfp740 ENSMUST00000141465 ENSMUSP00000122698 TRANSLATION protein_coding stop - 3 191.0 11.0 2.98 0.0 45.7 0.0 -2,-5 0.0075 4 -2.0 MINOR ENSMUSG00000046897 Zfp740 ENSMUST00000121206 - NO_TRANSLATION retained_intron ENSMUSG00000046897 Zfp740 ENSMUST00000133986 ENSMUSP00000122429 TRANSLATION protein_coding stop - 3 74.0 0.0 0.48 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000046897 Zfp740 ENSMUST00000123528 - NO_TRANSLATION retained_intron ENSMUSG00000046897 Zfp740 ENSMUST00000118729 ENSMUSP00000112985 TRANSLATION protein_coding - CCDS79416.1 1 168.0 11.0 3.28 2.5 45.7 0.0 -4,-5 0.6783 4 14.968 ALTERNATIVE:2 ENSMUSG00000016637 Ift27 ENSMUST00000016781 ENSMUSP00000016781 TRANSLATION protein_coding - CCDS37131.1 1 186.0 19.0 6.16 31.2 123.9 0.0 -4,-6 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000016637 Ift27 ENSMUST00000229417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016637 Ift27 ENSMUST00000230844 ENSMUSP00000155127 TRANSLATION protein_coding - - - 163.0 12.0 5.33 2.0 102.2 0.0 -4,-5 0.0285 4 10.5 MINOR ENSMUSG00000016637 Ift27 ENSMUST00000229476 ENSMUSP00000155736 TRANSLATION protein_coding stop - - 99.0 12.0 3.33 0.0 73.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000016637 Ift27 ENSMUST00000231069 - NO_TRANSLATION retained_intron ENSMUSG00000063704 Mapk15 ENSMUST00000089669 ENSMUSP00000087098 TRANSLATION protein_coding - CCDS27558.1 1 549.0 18.0 7.145 0.4 224.3 0.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000063704 Mapk15 ENSMUST00000161961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063704 Mapk15 ENSMUST00000230929 ENSMUSP00000154893 TRANSLATION protein_coding start - - 145.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000063704 Mapk15 ENSMUST00000160092 - NO_TRANSLATION retained_intron ENSMUSG00000063704 Mapk15 ENSMUST00000160637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063480 Snu13 ENSMUST00000230953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063480 Snu13 ENSMUST00000080622 ENSMUSP00000091840 TRANSLATION protein_coding - CCDS37154.1 1 128.0 0.0 2.0 34.9 88.0 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000063480 Snu13 ENSMUST00000166578 - NO_TRANSLATION retained_intron ENSMUSG00000063480 Snu13 ENSMUST00000072904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071749 4933412E24Rik ENSMUST00000096421 ENSMUSP00000094154 TRANSLATION protein_coding - CCDS49612.1 - 513.0 0.0 0.0 0.1 607.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000022205 Sub1 ENSMUST00000134414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022205 Sub1 ENSMUST00000022816 ENSMUSP00000022816 TRANSLATION protein_coding - CCDS27387.1 1 127.0 0.0 1.75 36.9 83.9 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000022205 Sub1 ENSMUST00000110504 ENSMUSP00000106130 TRANSLATION protein_coding - CCDS27387.1 5 127.0 0.0 1.75 36.9 83.9 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000022205 Sub1 ENSMUST00000129533 - NO_TRANSLATION retained_intron ENSMUSG00000050963 Kcns2 ENSMUST00000228725 ENSMUSP00000153984 TRANSLATION protein_coding - CCDS27421.1 - 477.0 0.0 0.4 27.1 247.4 3.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000050963 Kcns2 ENSMUST00000072868 ENSMUSP00000072645 TRANSLATION protein_coding - CCDS27421.1 1 477.0 0.0 0.4 27.1 247.4 3.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000044726 Erich5 ENSMUST00000060894 ENSMUSP00000058182 TRANSLATION protein_coding - CCDS27417.1 1 362.0 0.0 0.0 0.1 189.7 0.0 -4,-7 1.0 13 6.0 PRINCIPAL:1 ENSMUSG00000023050 Map3k12 ENSMUST00000164343 - NO_TRANSLATION retained_intron ENSMUSG00000023050 Map3k12 ENSMUST00000167677 - NO_TRANSLATION retained_intron ENSMUSG00000023050 Map3k12 ENSMUST00000169162 ENSMUSP00000129251 TRANSLATION protein_coding stop - 5 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023050 Map3k12 ENSMUST00000165174 ENSMUSP00000130786 TRANSLATION protein_coding stop - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000023050 Map3k12 ENSMUST00000169367 ENSMUSP00000129472 TRANSLATION protein_coding stop - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000023050 Map3k12 ENSMUST00000171565 ENSMUSP00000127629 TRANSLATION protein_coding - CCDS27885.1 1 888.0 3.0 5.8 10.3 206.8 0.0 -4,-7 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000023050 Map3k12 ENSMUST00000169377 ENSMUSP00000133209 TRANSLATION protein_coding - CCDS27885.1 1 888.0 3.0 5.8 10.3 206.8 0.0 -4,-7 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000023050 Map3k12 ENSMUST00000023812 ENSMUSP00000023812 TRANSLATION protein_coding - CCDS27885.1 1 888.0 3.0 5.8 10.3 206.8 0.0 -4,-7 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000055022 Cntn1 ENSMUST00000068378 ENSMUSP00000067842 TRANSLATION protein_coding - CCDS27763.1 1 1020.0 0.0 19.315 7.0 334.2 0.0 4,-1 1.0 41 14.0 PRINCIPAL:1 ENSMUSG00000055022 Cntn1 ENSMUST00000141187 - NO_TRANSLATION retained_intron ENSMUSG00000055022 Cntn1 ENSMUST00000169825 ENSMUSP00000133063 TRANSLATION protein_coding - CCDS27763.1 5 1020.0 0.0 19.315 7.0 334.2 0.0 4,-1 1.0 41 14.0 PRINCIPAL:1 ENSMUSG00000055022 Cntn1 ENSMUST00000000109 ENSMUSP00000000109 TRANSLATION protein_coding - CCDS27763.1 1 1020.0 0.0 19.315 7.0 334.2 0.0 4,-1 1.0 41 14.0 PRINCIPAL:1 ENSMUSG00000086361 Gm6569 ENSMUST00000154520 ENSMUSP00000121081 TRANSLATION protein_coding - - 3 175.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5993 - 0.0 PRINCIPAL:1 ENSMUSG00000022557 Bop1 ENSMUST00000229633 - NO_TRANSLATION retained_intron ENSMUSG00000022557 Bop1 ENSMUST00000023217 ENSMUSP00000023217 TRANSLATION protein_coding - CCDS27570.1 1 732.0 0.0 9.464 1.5 476.3 0.0 -4,-7 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000022557 Bop1 ENSMUST00000229132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022557 Bop1 ENSMUST00000229897 - NO_TRANSLATION retained_intron ENSMUSG00000050891 Tatdn1 ENSMUST00000226931 ENSMUSP00000153820 TRANSLATION protein_coding stop - - 15.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050891 Tatdn1 ENSMUST00000226835 ENSMUSP00000154049 TRANSLATION nonsense_mediated_decay - - - 78.0 0.0 2.542 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000050891 Tatdn1 ENSMUST00000226505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050891 Tatdn1 ENSMUST00000110155 ENSMUSP00000105783 TRANSLATION protein_coding - CCDS37082.1 1 264.0 4.0 7.99 0.0 165.4 0.0 -4,-5 0.0167 11 12.772 MINOR ENSMUSG00000050891 Tatdn1 ENSMUST00000238706 ENSMUSP00000158637 TRANSLATION nonsense_mediated_decay start - - 122.0 2.0 2.98 0.0 53.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000050891 Tatdn1 ENSMUST00000226141 - NO_TRANSLATION retained_intron ENSMUSG00000050891 Tatdn1 ENSMUST00000226707 ENSMUSP00000154152 TRANSLATION nonsense_mediated_decay - - - 35.0 0.0 1.16 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000050891 Tatdn1 ENSMUST00000228538 ENSMUSP00000154677 TRANSLATION protein_coding - - - 295.0 4.0 8.99 25.9 185.9 0.0 -4,-5 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000050891 Tatdn1 ENSMUST00000227540 ENSMUSP00000153779 TRANSLATION nonsense_mediated_decay - - - 71.0 0.0 1.66 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000050891 Tatdn1 ENSMUST00000228230 - NO_TRANSLATION retained_intron ENSMUSG00000022619 Mapk8ip2 ENSMUST00000137755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022619 Mapk8ip2 ENSMUST00000023291 ENSMUSP00000023291 TRANSLATION protein_coding - CCDS27752.1 1 830.0 0.0 3.14 0.4 160.8 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000022562 Oplah ENSMUST00000163127 - NO_TRANSLATION retained_intron ENSMUSG00000022562 Oplah ENSMUST00000169664 - NO_TRANSLATION retained_intron ENSMUSG00000022562 Oplah ENSMUST00000170261 - NO_TRANSLATION retained_intron ENSMUSG00000022562 Oplah ENSMUST00000171340 ENSMUSP00000129100 TRANSLATION protein_coding - CCDS27565.1 5 1288.0 0.0 9.031 7.1 1292.1 0.0 -4,-5 1.0 30 14.0 PRINCIPAL:1 ENSMUSG00000022562 Oplah ENSMUST00000023222 ENSMUSP00000023222 TRANSLATION protein_coding - CCDS27565.1 1 1288.0 0.0 9.031 7.1 1292.1 0.0 -4,-5 1.0 30 14.0 PRINCIPAL:1 ENSMUSG00000022562 Oplah ENSMUST00000163977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022562 Oplah ENSMUST00000164189 ENSMUSP00000131967 TRANSLATION protein_coding stop - 1 852.0 0.0 6.06 0.0 742.5 0.0 -4,-5 0.0371 22 -2.0 MINOR ENSMUSG00000022562 Oplah ENSMUST00000165279 ENSMUSP00000127955 TRANSLATION protein_coding stop - 3 53.0 0.0 0.3 0.0 43.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022562 Oplah ENSMUST00000170063 - NO_TRANSLATION retained_intron ENSMUSG00000022562 Oplah ENSMUST00000210024 ENSMUSP00000148028 TRANSLATION protein_coding stop - 5 253.0 0.0 0.6 0.0 197.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022562 Oplah ENSMUST00000230735 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044933 Sstr3 ENSMUST00000230400 ENSMUSP00000155582 TRANSLATION protein_coding stop - - 121.0 0.0 0.6 0.0 49.4 3.0 -4,-6 0.0024 - -2.0 MINOR ENSMUSG00000044933 Sstr3 ENSMUST00000053239 ENSMUSP00000058040 TRANSLATION protein_coding - CCDS27617.1 1 428.0 0.0 1.08 0.4 195.8 8.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022367 Has2 ENSMUST00000050544 ENSMUSP00000062212 TRANSLATION protein_coding - CCDS27480.1 1 552.0 13.0 3.0 36.9 52.9 0.0 -1,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000000489 Pdgfb ENSMUST00000229795 ENSMUSP00000154843 TRANSLATION protein_coding stop - - 49.0 0.0 0.75 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000000489 Pdgfb ENSMUST00000229168 - NO_TRANSLATION retained_intron ENSMUSG00000000489 Pdgfb ENSMUST00000229912 ENSMUSP00000155133 TRANSLATION protein_coding stop - - 169.0 0.0 2.42 0.0 127.2 0.0 -4,-5 0.0078 2 -2.0 MINOR ENSMUSG00000000489 Pdgfb ENSMUST00000000500 ENSMUSP00000000500 TRANSLATION protein_coding - CCDS27656.1 1 241.0 0.0 2.684 9.2 147.6 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000054619 Tmt1a ENSMUST00000231166 ENSMUSP00000154972 TRANSLATION protein_coding - - - 115.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000054619 Tmt1a ENSMUST00000230472 ENSMUSP00000155621 TRANSLATION protein_coding stop - - 191.0 17.0 4.778 0.0 76.0 0.0 -4,-6 0.0107 2 -2.0 MINOR ENSMUSG00000054619 Tmt1a ENSMUST00000230252 ENSMUSP00000155267 TRANSLATION protein_coding stop - - 88.0 8.0 1.28 0.0 44.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054619 Tmt1a ENSMUST00000067752 ENSMUSP00000065271 TRANSLATION protein_coding - CCDS27833.1 1 244.0 17.0 6.33 25.8 76.0 1.0 2,-2 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000054619 Tmt1a ENSMUST00000229574 ENSMUSP00000155283 TRANSLATION protein_coding - - - 82.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000054619 Tmt1a ENSMUST00000229217 ENSMUSP00000155295 TRANSLATION protein_coding - - - 193.0 8.0 3.978 0.0 52.3 0.0 -4,-7 0.0008 3 5.424 MINOR ENSMUSG00000054619 Tmt1a ENSMUST00000230018 ENSMUSP00000155095 TRANSLATION nonsense_mediated_decay start - - 58.0 8.0 1.33 0.0 45.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000054619 Tmt1a ENSMUST00000229588 ENSMUSP00000155112 TRANSLATION protein_coding - - - 200.0 17.0 4.33 0.0 65.7 1.0 2,-2 0.0178 2 13.182 MINOR ENSMUSG00000023039 Krt7 ENSMUST00000153021 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023039 Krt7 ENSMUST00000147662 ENSMUSP00000117046 TRANSLATION protein_coding stop - 5 115.0 0.0 2.35 0.0 114.4 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000023039 Krt7 ENSMUST00000068904 ENSMUSP00000069900 TRANSLATION protein_coding - CCDS27851.1 1 457.0 0.0 5.28 4.7 419.0 0.0 -4,0 1.0 24 14.0 PRINCIPAL:1 ENSMUSG00000023039 Krt7 ENSMUST00000141190 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023039 Krt7 ENSMUST00000131069 - NO_TRANSLATION retained_intron ENSMUSG00000022443 Myh9 ENSMUST00000016771 ENSMUSP00000016771 TRANSLATION protein_coding - CCDS27605.1 1 1960.0 16.0 33.558 21.5 2737.1 0.0 -4,-5 1.0 88 22.0 PRINCIPAL:1 ENSMUSG00000022443 Myh9 ENSMUST00000129453 - NO_TRANSLATION retained_intron ENSMUSG00000022443 Myh9 ENSMUST00000231192 ENSMUSP00000155562 TRANSLATION protein_coding start/stop - - 211.0 0.0 3.528 0.0 211.9 0.0 -4,0 0.0 10 -2.0 MINOR ENSMUSG00000022443 Myh9 ENSMUST00000123101 ENSMUSP00000116198 TRANSLATION nonsense_mediated_decay - - 5 120.0 0.0 1.0 0.0 73.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000022443 Myh9 ENSMUST00000229259 ENSMUSP00000155471 TRANSLATION protein_coding start/stop - - 110.0 0.0 1.85 0.0 88.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022443 Myh9 ENSMUST00000139729 - NO_TRANSLATION retained_intron ENSMUSG00000022443 Myh9 ENSMUST00000134878 - NO_TRANSLATION retained_intron ENSMUSG00000022443 Myh9 ENSMUST00000126796 - NO_TRANSLATION retained_intron ENSMUSG00000022443 Myh9 ENSMUST00000124844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005716 Pvalb ENSMUST00000120592 ENSMUSP00000112598 TRANSLATION protein_coding - CCDS27609.1 1 110.0 11.0 3.08 36.9 44.4 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000005716 Pvalb ENSMUST00000005860 ENSMUSP00000005860 TRANSLATION protein_coding - CCDS27609.1 1 110.0 11.0 3.08 36.9 44.4 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000116165 Pdxp ENSMUST00000089378 ENSMUSP00000086796 TRANSLATION protein_coding - CCDS27627.1 1 292.0 7.0 2.0 9.1 160.4 0.0 -4,-6 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000061740 Cyp2d22 ENSMUST00000229599 - NO_TRANSLATION retained_intron ENSMUSG00000061740 Cyp2d22 ENSMUST00000230370 - NO_TRANSLATION retained_intron ENSMUSG00000061740 Cyp2d22 ENSMUST00000228986 ENSMUSP00000155368 TRANSLATION protein_coding start/stop - - 240.0 21.0 5.0 0.0 256.2 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000061740 Cyp2d22 ENSMUST00000230663 - NO_TRANSLATION retained_intron ENSMUSG00000061740 Cyp2d22 ENSMUST00000229438 - NO_TRANSLATION retained_intron ENSMUSG00000061740 Cyp2d22 ENSMUST00000023083 ENSMUSP00000023083 TRANSLATION protein_coding - CCDS37159.1 1 500.0 36.0 10.35 6.0 458.1 0.0 -2,-5 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000022462 Slc38a2 ENSMUST00000229141 - NO_TRANSLATION retained_intron ENSMUSG00000022462 Slc38a2 ENSMUST00000023099 ENSMUSP00000023099 TRANSLATION protein_coding - CCDS27778.1 1 504.0 0.0 4.147 17.4 249.8 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000096852 Cyp2d12 ENSMUST00000228974 ENSMUSP00000154885 TRANSLATION nonsense_mediated_decay - - - 92.0 0.0 1.0 0.0 0.0 2.0 -2,-5 0.0009 - -2.0 MINOR ENSMUSG00000096852 Cyp2d12 ENSMUST00000229988 - NO_TRANSLATION retained_intron ENSMUSG00000096852 Cyp2d12 ENSMUST00000230859 - NO_TRANSLATION retained_intron ENSMUSG00000096852 Cyp2d12 ENSMUST00000229904 ENSMUSP00000154856 TRANSLATION protein_coding - - - 453.0 26.0 8.58 0.1 412.5 2.0 -2,-5 0.0134 - 9.066 MINOR ENSMUSG00000096852 Cyp2d12 ENSMUST00000229792 - NO_TRANSLATION retained_intron ENSMUSG00000096852 Cyp2d12 ENSMUST00000229103 ENSMUSP00000155031 TRANSLATION protein_coding stop - - 158.0 2.0 3.25 0.0 53.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000096852 Cyp2d12 ENSMUST00000068861 ENSMUSP00000071064 TRANSLATION protein_coding - CCDS37160.1 1 504.0 31.0 9.58 6.7 472.5 2.0 -2,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000037627 Rgs22 ENSMUST00000173018 ENSMUSP00000133703 TRANSLATION protein_coding start - 5 219.0 0.0 0.84 0.0 29.4 0.0 -4,-2 0.0395 1 -2.0 MINOR ENSMUSG00000037627 Rgs22 ENSMUST00000172831 ENSMUSP00000134259 TRANSLATION protein_coding - CCDS56979.1 5 1258.0 0.0 0.84 0.1 66.8 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000037627 Rgs22 ENSMUST00000164955 - NO_TRANSLATION retained_intron ENSMUSG00000037627 Rgs22 ENSMUST00000172737 ENSMUSP00000133508 TRANSLATION protein_coding start/stop - 5 262.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000022371 Col14a1 ENSMUST00000125416 ENSMUSP00000122455 TRANSLATION protein_coding start - 1 521.0 0.0 6.163 0.0 100.2 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000022371 Col14a1 ENSMUST00000110221 ENSMUSP00000105850 TRANSLATION protein_coding - CCDS37076.1 1 1794.0 10.0 22.213 8.8 789.3 0.0 4,-1 1.0 50 17.0 PRINCIPAL:3 ENSMUSG00000022371 Col14a1 ENSMUST00000023053 ENSMUSP00000023053 TRANSLATION protein_coding - - 5 1797.0 10.0 22.213 8.8 787.1 0.0 4,-1 0.8431 49 17.0 ALTERNATIVE:1 ENSMUSG00000023018 Smarcd1 ENSMUST00000229236 ENSMUSP00000155750 TRANSLATION protein_coding - - - 474.0 0.0 6.095 1.0 84.4 0.0 -3,-1 0.2441 11 12.0 MINOR ENSMUSG00000023018 Smarcd1 ENSMUST00000229845 ENSMUSP00000155667 TRANSLATION protein_coding stop - - 98.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000023018 Smarcd1 ENSMUST00000229968 - NO_TRANSLATION retained_intron ENSMUSG00000023018 Smarcd1 ENSMUST00000023759 ENSMUSP00000023759 TRANSLATION protein_coding - CCDS37204.1 1 515.0 0.0 6.095 20.4 84.4 0.0 -3,-1 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000023018 Smarcd1 ENSMUST00000230530 ENSMUSP00000155619 TRANSLATION protein_coding stop - - 175.0 0.0 1.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000023018 Smarcd1 ENSMUST00000228984 ENSMUSP00000154932 TRANSLATION protein_coding stop - - 95.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000023018 Smarcd1 ENSMUST00000230748 - NO_TRANSLATION retained_intron ENSMUSG00000036139 Hoxc9 ENSMUST00000001706 ENSMUSP00000001706 TRANSLATION protein_coding - CCDS27893.1 1 260.0 0.0 1.0 20.5 277.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036139 Hoxc9 ENSMUST00000173306 ENSMUSP00000134197 TRANSLATION protein_coding stop - 3 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000063236 1110038F14Rik ENSMUST00000229229 ENSMUSP00000155387 TRANSLATION protein_coding - - - 159.0 0.0 2.55 0.0 124.6 0.0 -4,-5 0.0634 - 8.0 ALTERNATIVE:2 ENSMUSG00000063236 1110038F14Rik ENSMUST00000231058 - NO_TRANSLATION retained_intron ENSMUSG00000063236 1110038F14Rik ENSMUST00000230274 ENSMUSP00000154907 TRANSLATION protein_coding - - - 160.0 0.0 2.55 0.0 131.7 0.0 -4,-5 0.0233 - 8.0 ALTERNATIVE:2 ENSMUSG00000063236 1110038F14Rik ENSMUST00000071792 ENSMUSP00000071698 TRANSLATION protein_coding - CCDS84175.1 1 222.0 0.0 2.55 0.4 131.7 0.0 -4,-2 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000022602 Arc ENSMUST00000023268 ENSMUSP00000023268 TRANSLATION protein_coding - CCDS37102.1 1 396.0 0.0 0.6 9.8 0.0 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000022602 Arc ENSMUST00000110009 ENSMUSP00000105636 TRANSLATION protein_coding - CCDS37102.1 1 396.0 0.0 0.6 9.8 0.0 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000023008 Fmnl3 ENSMUST00000120633 ENSMUSP00000113094 TRANSLATION protein_coding - CCDS79409.1 5 1027.0 0.0 15.15 5.9 628.9 0.0 -4,-5 0.6734 11 11.134 MINOR ENSMUSG00000023008 Fmnl3 ENSMUST00000088233 ENSMUSP00000085566 TRANSLATION protein_coding - CCDS27819.1 1 1028.0 0.0 15.15 7.1 628.9 0.0 -4,-5 0.8043 11 11.528 MINOR ENSMUSG00000023008 Fmnl3 ENSMUST00000139767 - NO_TRANSLATION retained_intron ENSMUSG00000023008 Fmnl3 ENSMUST00000140368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023008 Fmnl3 ENSMUST00000081224 ENSMUSP00000079984 TRANSLATION protein_coding - CCDS79408.1 1 976.0 0.0 16.15 5.9 636.8 0.0 -4,-5 1.0 10 13.606 PRINCIPAL:1 ENSMUSG00000034333 Zbed4 ENSMUST00000041297 ENSMUSP00000035437 TRANSLATION protein_coding - CCDS27731.1 1 1168.0 12.0 0.0 4.7 255.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000034333 Zbed4 ENSMUST00000160975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022141 Nipbl ENSMUST00000052965 ENSMUSP00000059385 TRANSLATION protein_coding - CCDS37035.1 1 2798.0 0.0 18.8195 8.3 226.0 0.0 -4,-7 1.0 39 15.0 PRINCIPAL:1 ENSMUSG00000075605 Slurp2 ENSMUST00000057932 ENSMUSP00000051457 TRANSLATION protein_coding - CCDS37103.1 1 97.0 0.0 2.0 3.8 44.2 0.0 3,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000022235 Cmbl ENSMUST00000226951 ENSMUSP00000153812 TRANSLATION protein_coding stop - - 215.0 2.0 5.58 0.0 123.6 0.0 -4,-5 0.0003 7 -2.0 MINOR ENSMUSG00000022235 Cmbl ENSMUST00000162532 ENSMUSP00000125296 TRANSLATION protein_coding stop - 5 174.0 1.0 4.33 0.0 70.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022235 Cmbl ENSMUST00000161088 ENSMUSP00000125020 TRANSLATION protein_coding stop - 2 118.0 0.0 2.83 0.0 42.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022235 Cmbl ENSMUST00000070918 ENSMUSP00000070314 TRANSLATION protein_coding - CCDS27410.1 1 245.0 2.0 6.58 29.7 135.5 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000022994 Adcy6 ENSMUST00000227501 ENSMUSP00000154012 TRANSLATION protein_coding stop - - 194.0 0.0 0.0 0.0 105.1 2.0 -4,-6 0.0004 3 -2.0 MINOR ENSMUSG00000022994 Adcy6 ENSMUST00000226236 - NO_TRANSLATION retained_intron ENSMUSG00000022994 Adcy6 ENSMUST00000228596 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022994 Adcy6 ENSMUST00000096224 ENSMUSP00000093939 TRANSLATION protein_coding - CCDS27799.1 1 1168.0 9.0 8.972 9.5 857.8 10.0 -4,-6 1.0 13 17.0 PRINCIPAL:4 ENSMUSG00000022994 Adcy6 ENSMUST00000228903 ENSMUSP00000154696 TRANSLATION nonsense_mediated_decay - - - 524.0 8.0 4.38 0.0 584.3 7.0 -4,-6 0.0071 4 -2.0 MINOR ENSMUSG00000022994 Adcy6 ENSMUST00000228566 ENSMUSP00000154421 TRANSLATION protein_coding - - - 1166.0 9.0 8.972 9.5 863.2 10.0 -4,-6 0.8867 13 17.0 ALTERNATIVE:1 ENSMUSG00000022994 Adcy6 ENSMUST00000226500 ENSMUSP00000154693 TRANSLATION protein_coding stop - - 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023015 Racgap1 ENSMUST00000171908 ENSMUSP00000128892 TRANSLATION protein_coding stop - 3 131.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000023015 Racgap1 ENSMUST00000168065 ENSMUSP00000132732 TRANSLATION nonsense_mediated_decay start - 5 151.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023015 Racgap1 ENSMUST00000171017 - NO_TRANSLATION retained_intron ENSMUSG00000023015 Racgap1 ENSMUST00000170369 - NO_TRANSLATION retained_intron ENSMUSG00000023015 Racgap1 ENSMUST00000165730 ENSMUSP00000130282 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023015 Racgap1 ENSMUST00000168834 - NO_TRANSLATION retained_intron ENSMUSG00000023015 Racgap1 ENSMUST00000169700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023015 Racgap1 ENSMUST00000023756 ENSMUSP00000023756 TRANSLATION protein_coding - CCDS27825.1 1 628.0 7.0 6.3 14.3 177.3 0.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000023015 Racgap1 ENSMUST00000169810 ENSMUSP00000130876 TRANSLATION protein_coding stop - 3 229.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 3 -2.0 MINOR ENSMUSG00000023015 Racgap1 ENSMUST00000168976 - NO_TRANSLATION retained_intron ENSMUSG00000023015 Racgap1 ENSMUST00000109581 ENSMUSP00000105209 TRANSLATION protein_coding stop - 5 35.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023015 Racgap1 ENSMUST00000165745 - NO_TRANSLATION retained_intron ENSMUSG00000023015 Racgap1 ENSMUST00000164983 ENSMUSP00000132471 TRANSLATION nonsense_mediated_decay - - 3 72.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023015 Racgap1 ENSMUST00000171702 ENSMUSP00000126417 TRANSLATION protein_coding - CCDS27825.1 1 628.0 7.0 6.3 14.3 177.3 0.0 -4,-7 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000022464 Slc38a4 ENSMUST00000166223 ENSMUSP00000127676 TRANSLATION protein_coding - CCDS27779.1 1 547.0 0.0 3.2465 18.2 271.8 10.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022464 Slc38a4 ENSMUST00000231039 ENSMUSP00000155158 TRANSLATION protein_coding - CCDS27779.1 - 547.0 0.0 3.2465 18.2 271.8 10.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022464 Slc38a4 ENSMUST00000230086 ENSMUSP00000154818 TRANSLATION protein_coding - CCDS27779.1 - 547.0 0.0 3.2465 18.2 271.8 10.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022464 Slc38a4 ENSMUST00000023101 ENSMUSP00000023101 TRANSLATION protein_coding - CCDS27779.1 1 547.0 0.0 3.2465 18.2 271.8 10.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022464 Slc38a4 ENSMUST00000230907 ENSMUSP00000155372 TRANSLATION protein_coding stop - - 160.0 0.0 0.6475 0.0 64.8 2.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000000346 Dazap2 ENSMUST00000000356 ENSMUSP00000000356 TRANSLATION protein_coding - CCDS27841.1 1 168.0 0.0 0.0 31.4 151.3 0.0 -4,-6 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000000346 Dazap2 ENSMUST00000230384 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000346 Dazap2 ENSMUST00000229424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000346 Dazap2 ENSMUST00000230661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060735 Rxfp3 ENSMUST00000058007 ENSMUSP00000062741 TRANSLATION protein_coding - CCDS27383.1 - 472.0 0.0 0.64 3.6 158.3 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000056069 Otulinl ENSMUST00000226581 ENSMUSP00000154311 TRANSLATION protein_coding start/stop - - 149.0 0.0 4.16 0.0 103.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000056069 Otulinl ENSMUST00000231473 ENSMUSP00000156228 TRANSLATION nonsense_mediated_decay start - - 39.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056069 Otulinl ENSMUST00000226170 ENSMUSP00000153902 TRANSLATION protein_coding - - - 317.0 0.0 5.91 0.0 284.8 0.0 -4,-2 0.0009 3 2.928 MINOR ENSMUSG00000056069 Otulinl ENSMUST00000226145 ENSMUSP00000154664 TRANSLATION protein_coding - - - 353.0 0.0 7.66 6.6 377.7 0.0 -4,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000056069 Otulinl ENSMUST00000232492 - NO_TRANSLATION retained_intron ENSMUSG00000056069 Otulinl ENSMUST00000100739 ENSMUSP00000098305 TRANSLATION protein_coding - CCDS27403.1 1 303.0 0.0 6.08 0.0 255.6 0.0 -4,-2 0.0076 3 2.838 MINOR ENSMUSG00000067615 Krt81 ENSMUST00000230541 - NO_TRANSLATION retained_intron ENSMUSG00000067615 Krt81 ENSMUST00000061185 ENSMUSP00000056525 TRANSLATION protein_coding - CCDS49734.1 1 481.0 0.0 4.47 8.8 367.6 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022324 Matn2 ENSMUST00000022947 ENSMUSP00000022947 TRANSLATION protein_coding - CCDS37056.1 1 937.0 20.0 10.6375 7.5 615.8 0.0 4,-1 1.0 15 16.268 ALTERNATIVE:1 ENSMUSG00000022324 Matn2 ENSMUST00000226766 ENSMUSP00000154740 TRANSLATION protein_coding - - - 280.0 5.0 1.0 0.0 161.8 0.0 4,-1 0.0005 7 0.0 MINOR ENSMUSG00000022324 Matn2 ENSMUST00000228570 ENSMUSP00000154572 TRANSLATION protein_coding - - - 810.0 20.0 9.5 0.0 510.1 0.0 4,-1 0.0453 13 10.526 MINOR ENSMUSG00000022324 Matn2 ENSMUST00000227759 ENSMUSP00000154040 TRANSLATION protein_coding - - - 956.0 20.0 10.6375 9.6 615.8 0.0 4,-1 0.9817 16 17.0 PRINCIPAL:3 ENSMUSG00000022324 Matn2 ENSMUST00000227119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032987 Or8s8 ENSMUST00000109163 ENSMUSP00000104791 TRANSLATION protein_coding - CCDS27794.1 - 311.0 0.0 1.0 9.2 182.4 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032987 Or8s8 ENSMUST00000217517 ENSMUSP00000150530 TRANSLATION protein_coding - CCDS27794.1 5 311.0 0.0 1.0 9.2 182.4 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022295 Atp6v1c1 ENSMUST00000228820 ENSMUSP00000154133 TRANSLATION protein_coding stop - - 31.0 0.0 1.0 0.0 23.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022295 Atp6v1c1 ENSMUST00000226533 ENSMUSP00000153731 TRANSLATION nonsense_mediated_decay - - - 101.0 0.0 3.0 0.0 114.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022295 Atp6v1c1 ENSMUST00000226487 - NO_TRANSLATION retained_intron ENSMUSG00000022295 Atp6v1c1 ENSMUST00000227482 - NO_TRANSLATION retained_intron ENSMUSG00000022295 Atp6v1c1 ENSMUST00000228486 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022295 Atp6v1c1 ENSMUST00000228475 - NO_TRANSLATION retained_intron ENSMUSG00000022295 Atp6v1c1 ENSMUST00000022904 ENSMUSP00000022904 TRANSLATION protein_coding - CCDS27439.1 1 382.0 0.0 11.83 36.9 552.3 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000022434 Fam118a ENSMUST00000023069 ENSMUSP00000023069 TRANSLATION protein_coding - CCDS27717.1 1 357.0 0.0 0.0 9.8 60.3 0.0 -4,-5 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000022434 Fam118a ENSMUST00000229153 - NO_TRANSLATION retained_intron ENSMUSG00000022434 Fam118a ENSMUST00000230213 ENSMUSP00000155344 TRANSLATION protein_coding stop - - 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0126 - -2.0 MINOR ENSMUSG00000022434 Fam118a ENSMUST00000230382 - NO_TRANSLATION retained_intron ENSMUSG00000022434 Fam118a ENSMUST00000229691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022434 Fam118a ENSMUST00000229203 ENSMUSP00000154985 TRANSLATION protein_coding - CCDS27717.1 - 357.0 0.0 0.0 9.8 60.3 0.0 -4,-5 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000022434 Fam118a ENSMUST00000229629 - NO_TRANSLATION retained_intron ENSMUSG00000033356 Pus7l ENSMUST00000134061 ENSMUSP00000120207 TRANSLATION protein_coding stop - 3 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0182 2 -2.0 MINOR ENSMUSG00000033356 Pus7l ENSMUST00000049151 ENSMUSP00000044075 TRANSLATION protein_coding - CCDS27771.1 1 702.0 0.0 2.85 0.7 0.0 0.0 -4,-5 1.0 17 6.0 PRINCIPAL:1 ENSMUSG00000033356 Pus7l ENSMUST00000147832 - NO_TRANSLATION retained_intron ENSMUSG00000064201 Krt2 ENSMUST00000023712 ENSMUSP00000023712 TRANSLATION protein_coding - CCDS37220.1 1 707.0 0.0 4.75 0.0 431.8 0.0 -4,-7 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000068349 Gml ENSMUST00000164026 ENSMUSP00000128174 TRANSLATION protein_coding - CCDS49637.1 2 176.0 0.0 0.0 0.1 0.0 0.0 3,-2 0.9513 - 0.0 PRINCIPAL:1 ENSMUSG00000068349 Gml ENSMUST00000185253 ENSMUSP00000140245 TRANSLATION protein_coding stop - 2 107.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.1098 - -2.0 MINOR ENSMUSG00000068349 Gml ENSMUST00000096400 ENSMUSP00000094131 TRANSLATION protein_coding - CCDS49637.1 1 176.0 0.0 0.0 0.1 0.0 0.0 3,-2 0.9513 - 0.0 PRINCIPAL:1 ENSMUSG00000022300 Dcaf13 ENSMUST00000226224 - NO_TRANSLATION retained_intron ENSMUSG00000022300 Dcaf13 ENSMUST00000227219 - NO_TRANSLATION retained_intron ENSMUSG00000022300 Dcaf13 ENSMUST00000228436 - NO_TRANSLATION retained_intron ENSMUSG00000022300 Dcaf13 ENSMUST00000022909 ENSMUSP00000022909 TRANSLATION protein_coding - CCDS37066.1 1 445.0 0.0 10.0 30.2 191.6 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000022453 Naga ENSMUST00000229948 ENSMUSP00000155159 TRANSLATION nonsense_mediated_decay - - - 56.0 1.0 1.198 0.0 49.6 0.0 2,-2 0.0029 2 -2.0 MINOR ENSMUSG00000022453 Naga ENSMUST00000023088 ENSMUSP00000023088 TRANSLATION protein_coding - CCDS27686.1 1 415.0 12.0 9.528 0.1 479.8 0.0 2,-2 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000022453 Naga ENSMUST00000229294 ENSMUSP00000154927 TRANSLATION protein_coding stop - - 237.0 12.0 6.33 0.0 390.6 0.0 -4,-6 0.0032 8 -2.0 MINOR ENSMUSG00000022453 Naga ENSMUST00000229733 ENSMUSP00000155238 TRANSLATION protein_coding - - - 99.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000022453 Naga ENSMUST00000230380 ENSMUSP00000155062 TRANSLATION protein_coding - - - 284.0 12.0 6.528 0.0 391.8 0.0 2,-2 0.0076 8 6.72 MINOR ENSMUSG00000022453 Naga ENSMUST00000230268 - NO_TRANSLATION retained_intron ENSMUSG00000022453 Naga ENSMUST00000229388 ENSMUSP00000155110 TRANSLATION protein_coding stop - - 218.0 12.0 5.528 0.0 324.0 0.0 2,-2 0.0039 6 -2.0 MINOR ENSMUSG00000022453 Naga ENSMUST00000230664 - NO_TRANSLATION retained_intron ENSMUSG00000022453 Naga ENSMUST00000230139 ENSMUSP00000155808 TRANSLATION nonsense_mediated_decay start - - 57.0 2.0 1.0 0.0 46.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022453 Naga ENSMUST00000230269 ENSMUSP00000155445 TRANSLATION protein_coding stop - - 92.0 3.0 2.0 0.0 144.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000075470 Alg10b ENSMUST00000100309 ENSMUSP00000097882 TRANSLATION protein_coding - CCDS27757.1 1 474.0 0.0 5.0 18.8 447.0 8.0 0,-3 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000075470 Alg10b ENSMUST00000231200 ENSMUSP00000154997 TRANSLATION protein_coding - - - 156.0 0.0 2.0 0.0 101.6 3.0 0,-3 0.0015 1 0.0 MINOR ENSMUSG00000022997 Wnt1 ENSMUST00000023734 ENSMUSP00000023734 TRANSLATION protein_coding - CCDS27807.1 1 370.0 0.0 2.9 11.4 400.6 0.0 4,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058057 Tmt1a3 ENSMUST00000075420 ENSMUSP00000074875 TRANSLATION protein_coding - CCDS37209.1 1 244.0 17.0 2.0 21.3 74.1 0.0 1,-3 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000022303 Dcstamp ENSMUST00000022913 ENSMUSP00000022913 TRANSLATION protein_coding - CCDS27444.1 1 470.0 0.0 0.0 5.2 186.1 7.0 -1,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000022303 Dcstamp ENSMUST00000228556 ENSMUSP00000154362 TRANSLATION protein_coding - - - 367.0 0.0 0.0 1.8 120.2 7.0 -1,-5 0.0627 - 2.426 MINOR ENSMUSG00000022303 Dcstamp ENSMUST00000227368 ENSMUSP00000154397 TRANSLATION protein_coding - - - 414.0 0.0 0.0 0.7 117.4 7.0 -1,-5 0.02 - 1.878 MINOR ENSMUSG00000022303 Dcstamp ENSMUST00000226831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022303 Dcstamp ENSMUST00000228701 ENSMUSP00000154564 TRANSLATION protein_coding stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -1,-7 0.0001 - -2.0 MINOR ENSMUSG00000022303 Dcstamp ENSMUST00000227792 ENSMUSP00000153957 TRANSLATION protein_coding - - - 392.0 0.0 0.0 0.0 117.4 7.0 -1,-5 0.0065 - 1.878 MINOR ENSMUSG00000058656 Samd12 ENSMUST00000132362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058656 Samd12 ENSMUST00000154119 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058656 Samd12 ENSMUST00000132059 ENSMUSP00000123446 TRANSLATION nonsense_mediated_decay - - 5 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058656 Samd12 ENSMUST00000078673 ENSMUSP00000077741 TRANSLATION protein_coding - CCDS37072.1 1 161.0 0.0 2.33 21.1 64.1 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000034730 Adgrb1 ENSMUST00000185682 ENSMUSP00000139428 TRANSLATION protein_coding - - 1 642.0 0.0 8.81 1.0 208.1 13.0 -2,-5 0.0543 12 0.0 MINOR ENSMUSG00000034730 Adgrb1 ENSMUST00000187639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034730 Adgrb1 ENSMUST00000186360 ENSMUSP00000140362 TRANSLATION nonsense_mediated_decay - - 1 1143.0 8.0 15.82 0.0 554.4 10.0 3,-2 0.0717 16 -2.0 MINOR ENSMUSG00000034730 Adgrb1 ENSMUST00000190524 ENSMUSP00000140407 TRANSLATION protein_coding stop - 3 112.0 0.0 3.0 0.0 89.3 7.0 -2,-5 0.0023 - -2.0 MINOR ENSMUSG00000034730 Adgrb1 ENSMUST00000186095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034730 Adgrb1 ENSMUST00000230935 - NO_TRANSLATION retained_intron ENSMUSG00000034730 Adgrb1 ENSMUST00000189200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034730 Adgrb1 ENSMUST00000042035 ENSMUSP00000046097 TRANSLATION protein_coding - CCDS70635.1 1 1582.0 8.0 19.97 3.5 618.8 13.0 3,-2 1.0 28 19.0 PRINCIPAL:1 ENSMUSG00000034730 Adgrb1 ENSMUST00000189353 ENSMUSP00000140889 TRANSLATION protein_coding stop - 5 147.0 0.0 3.83 0.0 131.7 9.0 -2,-5 0.0023 - -2.0 MINOR ENSMUSG00000034730 Adgrb1 ENSMUST00000187599 ENSMUSP00000140831 TRANSLATION protein_coding stop - 3 136.0 0.0 3.83 0.0 121.1 9.0 -2,-5 0.0023 - -2.0 MINOR ENSMUSG00000034730 Adgrb1 ENSMUST00000187485 ENSMUSP00000140959 TRANSLATION nonsense_mediated_decay - - 1 398.0 3.0 0.8 0.0 28.5 0.0 3,-2 0.0 4 -2.0 MINOR ENSMUSG00000022556 Hsf1 ENSMUST00000226238 ENSMUSP00000154386 TRANSLATION protein_coding start/stop - - 218.0 0.0 0.0 0.0 295.2 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000022556 Hsf1 ENSMUST00000228781 - NO_TRANSLATION retained_intron ENSMUSG00000022556 Hsf1 ENSMUST00000228720 - NO_TRANSLATION retained_intron ENSMUSG00000022556 Hsf1 ENSMUST00000226872 ENSMUSP00000154328 TRANSLATION protein_coding - - - 477.0 0.0 3.0 0.0 327.3 0.0 -4,-6 0.0005 6 5.25 MINOR ENSMUSG00000022556 Hsf1 ENSMUST00000227921 - NO_TRANSLATION retained_intron ENSMUSG00000022556 Hsf1 ENSMUST00000229363 ENSMUSP00000155104 TRANSLATION protein_coding - - - 438.0 0.0 3.0 0.0 326.5 0.0 -4,-6 0.0 6 5.25 MINOR ENSMUSG00000022556 Hsf1 ENSMUST00000230505 - NO_TRANSLATION retained_intron ENSMUSG00000022556 Hsf1 ENSMUST00000228688 ENSMUSP00000154799 TRANSLATION protein_coding start - - 78.0 0.0 0.0 0.0 114.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022556 Hsf1 ENSMUST00000228388 - NO_TRANSLATION retained_intron ENSMUSG00000022556 Hsf1 ENSMUST00000227478 ENSMUSP00000154602 TRANSLATION protein_coding - - - 525.0 0.0 3.0 9.1 515.0 0.0 -4,-6 1.0 6 14.25 PRINCIPAL:1 ENSMUSG00000022556 Hsf1 ENSMUST00000228868 ENSMUSP00000154346 TRANSLATION nonsense_mediated_decay - - - 172.0 0.0 3.375 0.0 117.3 0.0 -4,-6 0.0341 3 -2.0 MINOR ENSMUSG00000022556 Hsf1 ENSMUST00000228371 ENSMUSP00000154638 TRANSLATION protein_coding - - - 531.0 0.0 3.0 2.7 327.3 0.0 -4,-6 0.1953 6 5.88 MINOR ENSMUSG00000022556 Hsf1 ENSMUST00000228757 ENSMUSP00000154356 TRANSLATION nonsense_mediated_decay - - - 142.0 0.0 3.0 0.0 117.3 0.0 -4,-6 0.0003 2 -2.0 MINOR ENSMUSG00000022556 Hsf1 ENSMUST00000072838 ENSMUSP00000072617 TRANSLATION protein_coding - CCDS27572.1 1 503.0 0.0 3.0 2.7 326.5 0.0 -4,-6 0.2026 6 5.88 MINOR ENSMUSG00000022556 Hsf1 ENSMUST00000230069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022556 Hsf1 ENSMUST00000226860 ENSMUSP00000154526 TRANSLATION nonsense_mediated_decay - - - 107.0 0.0 2.375 0.0 72.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039942 Ptger4 ENSMUST00000047379 ENSMUSP00000048736 TRANSLATION protein_coding - CCDS27365.1 1 513.0 0.0 1.0 0.0 119.5 6.0 -4,-7 0.2916 2 12.0 MINOR ENSMUSG00000039942 Ptger4 ENSMUST00000120563 ENSMUSP00000112858 TRANSLATION protein_coding - CCDS49575.1 1 488.0 0.0 1.0 11.0 119.5 6.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000039942 Ptger4 ENSMUST00000133966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075602 Ly6a ENSMUST00000189068 ENSMUSP00000140638 TRANSLATION protein_coding - CCDS27540.1 5 134.0 0.0 2.08 0.1 65.4 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000075602 Ly6a ENSMUST00000187994 ENSMUSP00000140287 TRANSLATION protein_coding - CCDS27540.1 1 134.0 0.0 2.08 0.1 65.4 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000075602 Ly6a ENSMUST00000187171 ENSMUSP00000140099 TRANSLATION protein_coding - CCDS27540.1 1 134.0 0.0 2.08 0.1 65.4 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000075602 Ly6a ENSMUST00000190188 ENSMUSP00000139488 TRANSLATION protein_coding stop - 2 35.0 0.0 0.33 0.0 0.0 0.0 4,-1 0.0036 - -2.0 MINOR ENSMUSG00000075602 Ly6a ENSMUST00000023248 ENSMUSP00000023248 TRANSLATION protein_coding - CCDS27540.1 1 134.0 0.0 2.08 0.1 65.4 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000075602 Ly6a ENSMUST00000186526 ENSMUSP00000140998 TRANSLATION protein_coding - CCDS27540.1 2 134.0 0.0 2.08 0.1 65.4 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000022451 Twf1 ENSMUST00000152590 ENSMUSP00000119302 TRANSLATION protein_coding stop - 3 114.0 0.0 2.83 0.0 61.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022451 Twf1 ENSMUST00000155654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022451 Twf1 ENSMUST00000023087 ENSMUSP00000023087 TRANSLATION protein_coding - CCDS27773.1 1 350.0 0.0 8.33 24.8 143.2 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000022451 Twf1 ENSMUST00000127347 - NO_TRANSLATION retained_intron ENSMUSG00000022450 Ndufa6 ENSMUST00000230589 - NO_TRANSLATION retained_intron ENSMUSG00000022450 Ndufa6 ENSMUST00000023085 ENSMUSP00000023085 TRANSLATION protein_coding - CCDS27689.1 1 131.0 0.0 3.5 13.2 38.6 0.0 -4,0 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022450 Ndufa6 ENSMUST00000229537 ENSMUSP00000155547 TRANSLATION nonsense_mediated_decay start - - 52.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000022450 Ndufa6 ENSMUST00000229427 - NO_TRANSLATION retained_intron ENSMUSG00000022450 Ndufa6 ENSMUST00000229283 - NO_TRANSLATION retained_intron ENSMUSG00000022450 Ndufa6 ENSMUST00000230676 ENSMUSP00000155449 TRANSLATION protein_coding - - - 41.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 3 1.998 MINOR ENSMUSG00000022450 Ndufa6 ENSMUST00000230494 ENSMUSP00000155839 TRANSLATION protein_coding - - - 72.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0 1 1.002 MINOR ENSMUSG00000102018 Iqank1 ENSMUST00000187976 ENSMUSP00000140297 TRANSLATION protein_coding start - 5 182.0 0.0 2.25 0.0 40.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000102018 Iqank1 ENSMUST00000187060 - NO_TRANSLATION retained_intron ENSMUSG00000102018 Iqank1 ENSMUST00000185762 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102018 Iqank1 ENSMUST00000187868 ENSMUSP00000146582 TRANSLATION protein_coding - - 5 572.0 0.0 2.832 1.5 58.5 0.0 -4,-6 0.7873 3 13.0 PRINCIPAL:1 ENSMUSG00000102018 Iqank1 ENSMUST00000230169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102018 Iqank1 ENSMUST00000185810 - NO_TRANSLATION retained_intron ENSMUSG00000003352 Cacnb3 ENSMUST00000109150 ENSMUSP00000104778 TRANSLATION protein_coding - CCDS37192.1 5 483.0 0.0 8.686 18.8 224.9 0.0 -4,-5 0.978 11 14.574 MINOR ENSMUSG00000003352 Cacnb3 ENSMUST00000229282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003352 Cacnb3 ENSMUST00000003442 ENSMUSP00000003442 TRANSLATION protein_coding - - 1 457.0 0.0 8.436 0.7 203.4 0.0 -4,-5 0.008 11 9.21 MINOR ENSMUSG00000003352 Cacnb3 ENSMUST00000230064 - NO_TRANSLATION retained_intron ENSMUSG00000003352 Cacnb3 ENSMUST00000230769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003352 Cacnb3 ENSMUST00000229223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003352 Cacnb3 ENSMUST00000230490 ENSMUSP00000155514 TRANSLATION protein_coding - CCDS27800.1 - 484.0 0.0 9.186 20.9 224.9 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000022407 Adsl ENSMUST00000164371 - NO_TRANSLATION retained_intron ENSMUSG00000022407 Adsl ENSMUST00000170354 ENSMUSP00000132524 TRANSLATION protein_coding stop - 5 31.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022407 Adsl ENSMUST00000200201 ENSMUSP00000143188 TRANSLATION nonsense_mediated_decay - - 5 149.0 9.0 3.24 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000022407 Adsl ENSMUST00000207170 ENSMUSP00000146546 TRANSLATION protein_coding stop - 5 133.0 9.0 4.16 0.0 48.6 0.0 -4,-7 0.0003 6 -2.0 MINOR ENSMUSG00000022407 Adsl ENSMUST00000166711 ENSMUSP00000129601 TRANSLATION nonsense_mediated_decay - - 2 164.0 9.0 3.74 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000022407 Adsl ENSMUST00000023043 ENSMUSP00000023043 TRANSLATION protein_coding - CCDS27664.1 1 484.0 24.0 13.58 8.9 160.6 0.0 -4,-7 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000022407 Adsl ENSMUST00000163575 - NO_TRANSLATION retained_intron ENSMUSG00000022407 Adsl ENSMUST00000169238 ENSMUSP00000132423 TRANSLATION nonsense_mediated_decay - - 5 164.0 9.0 3.74 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022407 Adsl ENSMUST00000168756 ENSMUSP00000127593 TRANSLATION protein_coding - - 5 469.0 24.0 13.08 2.8 148.4 0.0 -4,-7 0.182 20 16.95 MINOR ENSMUSG00000022407 Adsl ENSMUST00000164806 ENSMUSP00000131998 TRANSLATION protein_coding - - 5 425.0 24.0 12.58 1.0 93.1 0.0 -4,-7 0.0187 19 11.952 MINOR ENSMUSG00000022407 Adsl ENSMUST00000198302 - NO_TRANSLATION retained_intron ENSMUSG00000022407 Adsl ENSMUST00000199284 ENSMUSP00000143222 TRANSLATION nonsense_mediated_decay start - 5 36.0 3.0 1.25 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000005354 Txn2 ENSMUST00000173631 ENSMUSP00000134682 TRANSLATION protein_coding start - 2 130.0 8.0 3.1 0.0 99.5 0.0 -4,-2 0.0293 4 -2.0 MINOR ENSMUSG00000005354 Txn2 ENSMUST00000109747 ENSMUSP00000105369 TRANSLATION protein_coding - - 1 149.0 5.0 2.475 0.0 67.3 0.0 -3,0 0.0004 1 12.558 MINOR ENSMUSG00000005354 Txn2 ENSMUST00000100486 ENSMUSP00000098055 TRANSLATION protein_coding - - 1 119.0 0.0 1.1 0.0 0.0 0.0 -3,0 0.0 - 1.998 MINOR ENSMUSG00000005354 Txn2 ENSMUST00000174529 ENSMUSP00000133605 TRANSLATION protein_coding start - 2 106.0 5.0 1.5 0.0 60.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005354 Txn2 ENSMUST00000109748 ENSMUSP00000105370 TRANSLATION protein_coding - CCDS27606.1 1 166.0 8.0 3.1 16.3 99.5 0.0 -3,0 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000005354 Txn2 ENSMUST00000173561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005354 Txn2 ENSMUST00000005487 ENSMUSP00000005487 TRANSLATION protein_coding - CCDS27606.1 1 166.0 8.0 3.1 16.3 99.5 0.0 -3,0 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000022615 Tymp ENSMUST00000023285 ENSMUSP00000023285 TRANSLATION protein_coding - CCDS27747.1 1 471.0 16.0 9.0 1.2 229.9 0.0 -4,-5 1.0 16 19.0 PRINCIPAL:1 ENSMUSG00000052496 Pkdrej ENSMUST00000064370 ENSMUSP00000086352 TRANSLATION protein_coding - CCDS27723.1 - 2126.0 0.0 0.0 0.0 964.7 0.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000041653 Pnpla3 ENSMUST00000045289 ENSMUSP00000043826 TRANSLATION protein_coding - CCDS37165.1 5 384.0 0.0 2.79 0.0 54.7 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041653 Pnpla3 ENSMUST00000230926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022329 Stk3 ENSMUST00000226555 ENSMUSP00000154154 TRANSLATION protein_coding - - - 495.0 20.0 6.75 0.0 328.2 0.0 -4,-5 0.1699 11 18.0 MINOR ENSMUSG00000022329 Stk3 ENSMUST00000138841 ENSMUSP00000116310 TRANSLATION nonsense_mediated_decay - - 5 38.0 1.0 0.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022329 Stk3 ENSMUST00000128425 - NO_TRANSLATION retained_intron ENSMUSG00000022329 Stk3 ENSMUST00000226730 - NO_TRANSLATION retained_intron ENSMUSG00000022329 Stk3 ENSMUST00000018476 ENSMUSP00000018476 TRANSLATION protein_coding - CCDS37059.1 1 497.0 20.0 6.75 23.5 328.2 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000022329 Stk3 ENSMUST00000067033 ENSMUSP00000064225 TRANSLATION protein_coding - - 1 427.0 12.0 5.0 1.1 272.6 0.0 -4,-5 0.0075 7 5.848 MINOR ENSMUSG00000059668 Krt4 ENSMUST00000023797 ENSMUSP00000023797 TRANSLATION protein_coding - CCDS37222.1 1 525.0 0.0 4.85 0.0 498.5 0.0 -4,0 1.0 35 12.0 PRINCIPAL:1 ENSMUSG00000022526 Zfp251 ENSMUST00000229494 ENSMUSP00000155649 TRANSLATION protein_coding stop - - 622.0 49.0 1.0 0.0 330.3 0.0 -4,-5 0.2561 - -2.0 MINOR ENSMUSG00000022526 Zfp251 ENSMUST00000080406 ENSMUSP00000079268 TRANSLATION protein_coding - CCDS27593.1 1 632.0 49.0 1.0 0.4 330.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000022526 Zfp251 ENSMUST00000230524 - NO_TRANSLATION retained_intron ENSMUSG00000022526 Zfp251 ENSMUST00000230315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022456 Septin3 ENSMUST00000230418 ENSMUSP00000154918 TRANSLATION protein_coding stop - - 75.0 1.0 2.33 0.0 120.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022456 Septin3 ENSMUST00000230799 - NO_TRANSLATION retained_intron ENSMUSG00000022456 Septin3 ENSMUST00000230365 ENSMUSP00000155480 TRANSLATION protein_coding - - - 341.0 19.0 8.41 0.0 382.8 0.0 -4,-6 0.1174 15 18.0 MINOR ENSMUSG00000022456 Septin3 ENSMUST00000116423 ENSMUSP00000112124 TRANSLATION protein_coding - CCDS37157.1 1 337.0 19.0 8.41 7.9 382.1 0.0 -4,-6 1.0 15 19.958 PRINCIPAL:1 ENSMUSG00000022456 Septin3 ENSMUST00000238416 ENSMUSP00000158597 TRANSLATION protein_coding - - - 822.0 19.0 8.41 0.0 382.8 0.0 -4,-7 0.1143 16 18.0 MINOR ENSMUSG00000022456 Septin3 ENSMUST00000239048 ENSMUSP00000158860 TRANSLATION protein_coding - - - 818.0 19.0 8.41 0.0 382.1 0.0 -4,-7 0.102 16 17.958 MINOR ENSMUSG00000022456 Septin3 ENSMUST00000229067 - NO_TRANSLATION retained_intron ENSMUSG00000022456 Septin3 ENSMUST00000230507 ENSMUSP00000155353 TRANSLATION protein_coding start - - 201.0 12.0 5.33 0.0 236.4 0.0 -4,-7 0.0 10 -2.0 MINOR ENSMUSG00000022456 Septin3 ENSMUST00000023095 ENSMUSP00000023095 TRANSLATION protein_coding - CCDS37157.1 1 337.0 19.0 8.41 7.9 382.1 0.0 -4,-6 1.0 15 19.958 PRINCIPAL:1 ENSMUSG00000023043 Krt18 ENSMUST00000023803 ENSMUSP00000023803 TRANSLATION protein_coding - CCDS27869.1 1 423.0 0.0 3.95 1.5 350.4 0.0 -4,0 1.0 27 13.0 PRINCIPAL:1 ENSMUSG00000072511 Hhla1 ENSMUST00000100584 ENSMUSP00000098149 TRANSLATION protein_coding - CCDS49618.1 1 514.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.9732 - 0.0 PRINCIPAL:2 ENSMUSG00000072511 Hhla1 ENSMUST00000239034 ENSMUSP00000159116 TRANSLATION protein_coding - - - 540.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.1859 - 0.0 ALTERNATIVE:2 ENSMUSG00000040420 Cdh18 ENSMUST00000170626 - NO_TRANSLATION retained_intron ENSMUSG00000040420 Cdh18 ENSMUST00000167623 ENSMUSP00000128011 TRANSLATION protein_coding start - 5 441.0 44.0 7.0 0.0 232.5 0.0 -4,-5 0.0009 5 -2.0 MINOR ENSMUSG00000040420 Cdh18 ENSMUST00000040427 - NO_TRANSLATION retained_intron ENSMUSG00000040420 Cdh18 ENSMUST00000163361 ENSMUSP00000129170 TRANSLATION protein_coding stop - 5 337.0 30.0 4.75 0.0 149.7 0.0 1,-2 0.0014 3 -2.0 MINOR ENSMUSG00000040420 Cdh18 ENSMUST00000226693 ENSMUSP00000153905 TRANSLATION protein_coding - - - 575.0 52.0 8.8 10.0 235.1 0.0 1,-2 0.1822 5 8.52 MINOR ENSMUSG00000040420 Cdh18 ENSMUST00000164787 ENSMUSP00000130851 TRANSLATION protein_coding - CCDS49585.1 5 790.0 53.0 10.95 25.2 446.2 0.0 1,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000040420 Cdh18 ENSMUST00000165614 ENSMUSP00000128643 TRANSLATION protein_coding - - 5 574.0 52.0 8.55 10.0 235.1 0.0 1,-2 0.1824 5 8.022 MINOR ENSMUSG00000061923 Odf1 ENSMUST00000081966 ENSMUSP00000080632 TRANSLATION protein_coding - CCDS49596.1 1 248.0 0.0 0.8 1.8 24.6 0.0 -4,-6 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000022546 Gpt ENSMUST00000229140 ENSMUSP00000155686 TRANSLATION protein_coding - - - 256.0 10.0 5.83 0.0 58.3 0.0 -4,-5 0.0 8 3.81 MINOR ENSMUSG00000022546 Gpt ENSMUST00000229856 - NO_TRANSLATION retained_intron ENSMUSG00000022546 Gpt ENSMUST00000230283 - NO_TRANSLATION retained_intron ENSMUSG00000022546 Gpt ENSMUST00000229734 ENSMUSP00000155491 TRANSLATION nonsense_mediated_decay - - - 363.0 13.0 7.75 0.0 55.5 0.0 -4,-6 0.0 13 -2.0 MINOR ENSMUSG00000022546 Gpt ENSMUST00000228987 - NO_TRANSLATION retained_intron ENSMUSG00000022546 Gpt ENSMUST00000229340 - NO_TRANSLATION retained_intron ENSMUSG00000022546 Gpt ENSMUST00000229679 ENSMUSP00000155553 TRANSLATION protein_coding - CCDS27586.1 - 496.0 17.0 11.66 6.7 117.0 0.0 -4,-6 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000022546 Gpt ENSMUST00000230482 - NO_TRANSLATION retained_intron ENSMUSG00000022546 Gpt ENSMUST00000023203 ENSMUSP00000023203 TRANSLATION protein_coding - CCDS27586.1 1 496.0 17.0 11.66 6.7 117.0 0.0 -4,-6 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000022546 Gpt ENSMUST00000231028 ENSMUSP00000155475 TRANSLATION protein_coding stop - - 233.0 6.0 5.33 0.0 31.5 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000067614 Krt86 ENSMUST00000088049 ENSMUSP00000085365 TRANSLATION protein_coding - CCDS37218.1 1 486.0 0.0 4.47 7.3 367.8 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000071713 Csf2rb ENSMUST00000229657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071713 Csf2rb ENSMUST00000229920 - NO_TRANSLATION retained_intron ENSMUSG00000071713 Csf2rb ENSMUST00000231888 ENSMUSP00000155947 TRANSLATION protein_coding stop - - 66.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071713 Csf2rb ENSMUST00000229034 ENSMUSP00000155050 TRANSLATION protein_coding stop - - 46.0 0.0 0.5 0.0 0.0 0.0 2,-2 0.0023 - -2.0 MINOR ENSMUSG00000071713 Csf2rb ENSMUST00000229678 ENSMUSP00000155092 TRANSLATION protein_coding - - - 541.0 0.0 8.65 0.0 58.7 0.0 2,-2 0.1769 - 8.0 ALTERNATIVE:2 ENSMUSG00000071713 Csf2rb ENSMUST00000231769 - NO_TRANSLATION retained_intron ENSMUSG00000071713 Csf2rb ENSMUST00000230264 ENSMUSP00000154836 TRANSLATION protein_coding - CCDS27612.1 - 896.0 0.0 8.65 0.4 58.7 0.0 2,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000071713 Csf2rb ENSMUST00000096355 ENSMUSP00000094082 TRANSLATION protein_coding - CCDS27612.1 1 896.0 0.0 8.65 0.4 58.7 0.0 2,-2 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000047394 Odf3b ENSMUST00000049968 ENSMUSP00000053112 TRANSLATION protein_coding - CCDS27748.1 1 238.0 0.0 1.066 0.8 66.5 0.0 -4,-2 0.0755 4 9.696 MINOR ENSMUSG00000047394 Odf3b ENSMUST00000238996 ENSMUSP00000159125 TRANSLATION protein_coding - - - 254.0 0.0 1.48 10.5 74.2 0.0 -4,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000047394 Odf3b ENSMUST00000227854 - NO_TRANSLATION retained_intron ENSMUSG00000047394 Odf3b ENSMUST00000227834 ENSMUSP00000154266 TRANSLATION protein_coding - - - 163.0 0.0 1.066 0.0 53.9 0.0 -4,-2 0.0005 4 8.676 MINOR ENSMUSG00000047394 Odf3b ENSMUST00000227203 - NO_TRANSLATION retained_intron ENSMUSG00000047394 Odf3b ENSMUST00000226267 - NO_TRANSLATION retained_intron ENSMUSG00000047394 Odf3b ENSMUST00000228005 - NO_TRANSLATION retained_intron ENSMUSG00000047394 Odf3b ENSMUST00000228111 ENSMUSP00000154008 TRANSLATION protein_coding stop - - 33.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000023011 Faim2 ENSMUST00000229214 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023011 Faim2 ENSMUST00000230837 - NO_TRANSLATION retained_intron ENSMUSG00000023011 Faim2 ENSMUST00000231211 - NO_TRANSLATION retained_intron ENSMUSG00000023011 Faim2 ENSMUST00000231171 ENSMUSP00000155195 TRANSLATION protein_coding - - - 305.0 0.0 6.3 1.1 114.4 7.0 -4,-6 0.24 3 12.02 MINOR ENSMUSG00000023011 Faim2 ENSMUST00000023750 ENSMUSP00000023750 TRANSLATION protein_coding - CCDS37203.1 1 317.0 0.0 6.3 19.4 114.4 7.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000023011 Faim2 ENSMUST00000230603 - NO_TRANSLATION retained_intron ENSMUSG00000068085 Cyp2d11 ENSMUST00000170255 ENSMUSP00000130338 TRANSLATION protein_coding - CCDS49680.1 5 504.0 30.0 9.0 5.6 462.4 0.0 -1,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000022142 Nup155 ENSMUST00000230647 - NO_TRANSLATION retained_intron ENSMUSG00000022142 Nup155 ENSMUST00000230925 - NO_TRANSLATION retained_intron ENSMUSG00000022142 Nup155 ENSMUST00000229039 - NO_TRANSLATION retained_intron ENSMUSG00000022142 Nup155 ENSMUST00000230017 ENSMUSP00000155093 TRANSLATION protein_coding - - - 1346.0 0.0 16.025 0.0 421.6 0.0 -2,-5 0.1919 31 10.002 MINOR ENSMUSG00000022142 Nup155 ENSMUST00000230337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022142 Nup155 ENSMUST00000229466 - NO_TRANSLATION retained_intron ENSMUSG00000022142 Nup155 ENSMUST00000163765 ENSMUSP00000128819 TRANSLATION protein_coding - CCDS37034.1 1 1391.0 0.0 17.025 9.0 421.6 0.0 -2,-5 1.0 31 15.0 PRINCIPAL:1 ENSMUSG00000023031 Cela1 ENSMUST00000229888 - NO_TRANSLATION retained_intron ENSMUSG00000023031 Cela1 ENSMUST00000230572 ENSMUSP00000155576 TRANSLATION protein_coding - - - 69.0 3.0 1.83 0.0 56.6 0.0 -4,-5 0.0003 3 0.0 MINOR ENSMUSG00000023031 Cela1 ENSMUST00000230740 ENSMUSP00000155197 TRANSLATION protein_coding - - - 69.0 3.0 1.83 0.0 56.6 0.0 -4,-5 0.0003 3 0.0 MINOR ENSMUSG00000023031 Cela1 ENSMUST00000230312 ENSMUSP00000155222 TRANSLATION protein_coding start - - 154.0 10.0 4.0 0.0 139.2 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000023031 Cela1 ENSMUST00000229235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023031 Cela1 ENSMUST00000229869 ENSMUSP00000154894 TRANSLATION protein_coding - - - 46.0 0.0 1.0 0.0 21.4 0.0 -4,-2 0.0 2 0.0 MINOR ENSMUSG00000023031 Cela1 ENSMUST00000023775 ENSMUSP00000023775 TRANSLATION protein_coding - CCDS37213.1 1 266.0 14.0 6.68 20.6 230.1 0.0 3,-2 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000023031 Cela1 ENSMUST00000230744 ENSMUSP00000155165 TRANSLATION protein_coding - - - 46.0 0.0 1.0 0.0 21.4 0.0 -4,-2 0.0 2 0.0 MINOR ENSMUSG00000023031 Cela1 ENSMUST00000230642 - NO_TRANSLATION retained_intron ENSMUSG00000022347 A1bg ENSMUST00000228881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022347 A1bg ENSMUST00000096418 ENSMUSP00000094151 TRANSLATION protein_coding - CCDS37085.1 1 512.0 0.0 2.88 0.4 73.5 0.0 3,-2 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000022347 A1bg ENSMUST00000228632 ENSMUSP00000154317 TRANSLATION protein_coding stop - - 110.0 0.0 0.5 0.0 28.8 0.0 3,-2 0.0 2 -2.0 MINOR ENSMUSG00000121583 Zftraf1 ENSMUST00000081291 ENSMUSP00000080043 TRANSLATION protein_coding - CCDS27581.1 1 311.0 11.0 3.0 2.2 0.0 0.0 0,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000058655 Eif4b ENSMUST00000229400 ENSMUSP00000155206 TRANSLATION protein_coding - - - 403.0 0.0 2.3 0.0 48.2 0.0 -4,-5 0.0285 9 12.0 MINOR ENSMUSG00000058655 Eif4b ENSMUST00000229122 - NO_TRANSLATION retained_intron ENSMUSG00000058655 Eif4b ENSMUST00000229254 - NO_TRANSLATION retained_intron ENSMUSG00000058655 Eif4b ENSMUST00000169681 ENSMUSP00000127774 TRANSLATION protein_coding - CCDS49737.1 1 611.0 0.0 2.3 8.0 48.2 0.0 -4,-5 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000016763 Scube1 ENSMUST00000144773 - NO_TRANSLATION retained_intron ENSMUSG00000016763 Scube1 ENSMUST00000016907 ENSMUSP00000016907 TRANSLATION protein_coding - CCDS70655.1 1 1018.0 42.0 10.215 11.1 460.6 0.0 3,-3 1.0 9 17.0 ALTERNATIVE:1 ENSMUSG00000016763 Scube1 ENSMUST00000171496 ENSMUSP00000130131 TRANSLATION protein_coding - CCDS49684.1 5 988.0 42.0 10.215 11.0 460.6 0.0 3,-3 0.9619 10 16.97 PRINCIPAL:3 ENSMUSG00000016763 Scube1 ENSMUST00000230060 - NO_TRANSLATION retained_intron ENSMUSG00000016763 Scube1 ENSMUST00000229057 - NO_TRANSLATION retained_intron ENSMUSG00000016763 Scube1 ENSMUST00000076060 ENSMUSP00000075434 TRANSLATION protein_coding - - 1 992.0 42.0 10.215 6.8 460.6 0.0 3,-3 0.7372 10 15.722 MINOR ENSMUSG00000016763 Scube1 ENSMUST00000043634 ENSMUSP00000044835 TRANSLATION protein_coding - CCDS70654.1 1 907.0 42.0 9.495 1.6 460.6 0.0 3,-3 0.2917 8 12.737 MINOR ENSMUSG00000022305 Lrp12 ENSMUST00000110305 ENSMUSP00000105934 TRANSLATION protein_coding - CCDS84168.1 1 839.0 24.0 1.8535 11.6 293.4 0.0 0,-4 0.9554 5 17.216 ALTERNATIVE:1 ENSMUSG00000022305 Lrp12 ENSMUST00000228575 ENSMUSP00000154273 TRANSLATION nonsense_mediated_decay - - - 43.0 0.0 0.1875 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022305 Lrp12 ENSMUST00000022916 ENSMUSP00000022916 TRANSLATION protein_coding - CCDS27446.1 1 858.0 24.0 1.9195 13.4 293.4 0.0 0,-3 1.0 5 18.0 PRINCIPAL:4 ENSMUSG00000022305 Lrp12 ENSMUST00000146714 - NO_TRANSLATION retained_intron ENSMUSG00000022362 Gm29394 ENSMUST00000177504 ENSMUSP00000135111 TRANSLATION protein_coding - - 3 77.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000022362 Gm29394 ENSMUST00000176935 ENSMUSP00000134752 TRANSLATION protein_coding,RT - - 2 199.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1244 - -2.0 MINOR ENSMUSG00000022362 Gm29394 ENSMUST00000177176 ENSMUSP00000135403 TRANSLATION protein_coding,RT stop - 3 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0234 - -2.0 MINOR ENSMUSG00000022362 Gm29394 ENSMUST00000176076 ENSMUSP00000135503 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.028 - -2.0 MINOR ENSMUSG00000116079 Gm36245 ENSMUST00000230670 ENSMUSP00000155154 TRANSLATION protein_coding - - - 93.0 0.0 0.0 0.0 30.3 0.0 -4,-6 0.6889 - 6.0 PRINCIPAL:1 ENSMUSG00000048546 Tob2 ENSMUST00000230448 - NO_TRANSLATION retained_intron ENSMUSG00000048546 Tob2 ENSMUST00000231000 ENSMUSP00000155503 TRANSLATION protein_coding stop - - 44.0 0.0 1.0 0.0 43.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048546 Tob2 ENSMUST00000050467 ENSMUSP00000061390 TRANSLATION protein_coding - CCDS27673.1 1 345.0 0.0 1.5 6.3 167.1 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000048546 Tob2 ENSMUST00000229500 - NO_TRANSLATION retained_intron ENSMUSG00000036760 Kcnk9 ENSMUST00000044624 ENSMUSP00000038729 TRANSLATION protein_coding - CCDS27515.1 1 402.0 0.0 2.0 0.1 126.8 0.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022431 Ribc2 ENSMUST00000023067 ENSMUSP00000023067 TRANSLATION protein_coding - CCDS49689.1 1 377.0 0.0 5.5 7.5 479.4 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000022431 Ribc2 ENSMUST00000229238 ENSMUSP00000154931 TRANSLATION nonsense_mediated_decay - - - 240.0 0.0 2.75 0.0 285.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036167 Pphln1 ENSMUST00000109256 ENSMUSP00000104879 TRANSLATION protein_coding - CCDS37181.1 1 293.0 0.0 1.6 6.6 88.9 0.0 -4,-6 0.8357 4 10.367 ALTERNATIVE:1 ENSMUSG00000036167 Pphln1 ENSMUST00000165935 ENSMUSP00000131121 TRANSLATION protein_coding - CCDS37181.1 1 293.0 0.0 1.6 6.6 88.9 0.0 -4,-6 0.8357 4 10.367 ALTERNATIVE:1 ENSMUSG00000036167 Pphln1 ENSMUST00000230385 ENSMUSP00000155236 TRANSLATION protein_coding stop - - 125.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000036167 Pphln1 ENSMUST00000229071 ENSMUSP00000154876 TRANSLATION protein_coding - CCDS37181.1 - 293.0 0.0 1.6 6.6 88.9 0.0 -4,-6 0.8357 4 10.367 ALTERNATIVE:1 ENSMUSG00000036167 Pphln1 ENSMUST00000049122 ENSMUSP00000042762 TRANSLATION protein_coding - CCDS27767.1 1 381.0 0.0 1.6 0.4 88.9 0.0 -4,-5 0.3233 5 8.0 MINOR ENSMUSG00000036167 Pphln1 ENSMUST00000229721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036167 Pphln1 ENSMUST00000068457 ENSMUSP00000068165 TRANSLATION protein_coding - CCDS27768.1 1 312.0 0.0 1.6 8.1 88.9 0.0 -4,-6 1.0 4 11.0 PRINCIPAL:4 ENSMUSG00000036046 5031439G07Rik ENSMUST00000170863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036046 5031439G07Rik ENSMUST00000047144 ENSMUSP00000037011 TRANSLATION protein_coding - - 1 404.0 0.0 0.0 3.3 331.6 0.0 -4,-2 1.0 8 3.0 PRINCIPAL:2 ENSMUSG00000036046 5031439G07Rik ENSMUST00000165743 ENSMUSP00000128699 TRANSLATION protein_coding - CCDS27715.1 1 447.0 0.0 0.0 0.4 331.6 0.0 -2,2 0.3119 9 2.0 ALTERNATIVE:2 ENSMUSG00000036046 5031439G07Rik ENSMUST00000124308 - NO_TRANSLATION retained_intron ENSMUSG00000058290 Espl1 ENSMUST00000230212 ENSMUSP00000155074 TRANSLATION protein_coding stop - - 165.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000058290 Espl1 ENSMUST00000064924 ENSMUSP00000064465 TRANSLATION protein_coding - CCDS27878.1 1 2118.0 0.0 5.042 1.1 301.1 0.0 -4,-6 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000058290 Espl1 ENSMUST00000231104 ENSMUSP00000155469 TRANSLATION protein_coding stop - - 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000058290 Espl1 ENSMUST00000231207 - NO_TRANSLATION retained_intron ENSMUSG00000058290 Espl1 ENSMUST00000230222 - NO_TRANSLATION retained_intron ENSMUSG00000058290 Espl1 ENSMUST00000229050 ENSMUSP00000155304 TRANSLATION protein_coding - CCDS27878.1 - 2118.0 0.0 5.042 1.1 301.1 0.0 -4,-6 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000058290 Espl1 ENSMUST00000229942 ENSMUSP00000155666 TRANSLATION nonsense_mediated_decay start - - 110.0 0.0 1.375 0.0 89.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000058290 Espl1 ENSMUST00000230116 - NO_TRANSLATION retained_intron ENSMUSG00000058290 Espl1 ENSMUST00000230617 - NO_TRANSLATION retained_intron ENSMUSG00000023013 Aqp2 ENSMUST00000023752 ENSMUSP00000023752 TRANSLATION protein_coding - CCDS27822.1 1 271.0 0.0 3.75 12.9 268.1 0.0 0,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000078932 CN725425 ENSMUST00000190436 ENSMUSP00000140772 TRANSLATION protein_coding - - 5 652.0 0.0 0.0 0.4 660.7 0.0 -4,-2 0.7997 1 6.0 PRINCIPAL:1 ENSMUSG00000078932 CN725425 ENSMUST00000109284 ENSMUSP00000104907 TRANSLATION protein_coding start/stop - 5 643.0 0.0 0.0 0.0 660.7 0.0 -4,-6 0.2992 1 -2.0 MINOR ENSMUSG00000016541 Atxn10 ENSMUST00000163242 ENSMUSP00000132450 TRANSLATION protein_coding - CCDS37170.1 1 475.0 0.0 0.0 7.3 119.5 0.0 -4,-2 1.0 22 8.0 PRINCIPAL:1 ENSMUSG00000022554 Hgh1 ENSMUST00000229212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022554 Hgh1 ENSMUST00000230320 - NO_TRANSLATION retained_intron ENSMUSG00000022554 Hgh1 ENSMUST00000023213 ENSMUSP00000023213 TRANSLATION protein_coding - CCDS27569.1 1 393.0 0.0 6.0 0.4 251.6 0.0 -4,-7 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000001655 Hoxc13 ENSMUST00000001700 ENSMUSP00000001700 TRANSLATION protein_coding - CCDS27890.1 1 328.0 0.0 1.0 7.5 185.0 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000022246 Rai14 ENSMUST00000227366 - NO_TRANSLATION retained_intron ENSMUSG00000022246 Rai14 ENSMUST00000226530 - NO_TRANSLATION retained_intron ENSMUSG00000022246 Rai14 ENSMUST00000169385 ENSMUSP00000126325 TRANSLATION protein_coding - CCDS37043.1 1 979.0 0.0 6.148 8.3 134.1 0.0 -4,-5 1.0 35 15.0 PRINCIPAL:1 ENSMUSG00000022246 Rai14 ENSMUST00000227506 ENSMUSP00000153969 TRANSLATION protein_coding - - - 950.0 0.0 5.848 5.4 134.1 0.0 -4,-5 0.6908 33 13.209 MINOR ENSMUSG00000022246 Rai14 ENSMUST00000227464 - NO_TRANSLATION retained_intron ENSMUSG00000022246 Rai14 ENSMUST00000226737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022246 Rai14 ENSMUST00000090339 ENSMUSP00000087815 TRANSLATION protein_coding - CCDS37043.1 1 979.0 0.0 6.148 8.3 134.1 0.0 -4,-5 1.0 35 15.0 PRINCIPAL:1 ENSMUSG00000068246 Apol9b ENSMUST00000230742 ENSMUSP00000154979 TRANSLATION protein_coding stop - - 180.0 0.0 0.5 0.0 231.0 0.0 -4,-6 0.0255 - -2.0 MINOR ENSMUSG00000068246 Apol9b ENSMUST00000230377 ENSMUSP00000155167 TRANSLATION protein_coding stop - - 126.0 0.0 0.5 0.0 171.2 0.0 -4,-6 0.0285 - -2.0 MINOR ENSMUSG00000068246 Apol9b ENSMUST00000230979 ENSMUSP00000155314 TRANSLATION protein_coding - CCDS27604.1 - 310.0 0.0 0.5 0.1 375.0 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000068246 Apol9b ENSMUST00000109775 ENSMUSP00000105397 TRANSLATION protein_coding - CCDS27604.1 1 310.0 0.0 0.5 0.1 375.0 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000055827 Gsdmc3 ENSMUST00000190682 ENSMUSP00000139472 TRANSLATION protein_coding - CCDS37088.1 1 480.0 0.0 4.13 0.0 505.3 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000055827 Gsdmc3 ENSMUST00000089894 ENSMUSP00000087339 TRANSLATION protein_coding - CCDS37088.1 5 480.0 0.0 4.13 0.0 505.3 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000055827 Gsdmc3 ENSMUST00000185526 ENSMUSP00000140272 TRANSLATION protein_coding - CCDS37088.1 5 480.0 0.0 4.13 0.0 505.3 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000032988 Slc16a8 ENSMUST00000039752 ENSMUSP00000040522 TRANSLATION protein_coding - CCDS27636.1 1 492.0 0.0 2.28 0.0 92.0 0.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000032988 Slc16a8 ENSMUST00000230477 - NO_TRANSLATION retained_intron ENSMUSG00000036298 Slc2a13 ENSMUST00000109282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036298 Slc2a13 ENSMUST00000156971 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036298 Slc2a13 ENSMUST00000109283 ENSMUSP00000104906 TRANSLATION protein_coding - CCDS27761.2 1 637.0 0.0 10.0 0.0 379.7 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000091650 Apol11a ENSMUST00000172191 ENSMUSP00000132565 TRANSLATION protein_coding - CCDS49661.1 5 334.0 0.0 0.8 0.0 293.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042961 Egflam ENSMUST00000096494 ENSMUSP00000094238 TRANSLATION protein_coding - CCDS79359.1 1 1017.0 4.0 10.895 1.1 432.5 0.0 2,-1 0.7012 15 12.125 ALTERNATIVE:2 ENSMUSG00000042961 Egflam ENSMUST00000160273 - NO_TRANSLATION retained_intron ENSMUSG00000042961 Egflam ENSMUST00000159726 - NO_TRANSLATION retained_intron ENSMUSG00000042961 Egflam ENSMUST00000160314 - NO_TRANSLATION retained_intron ENSMUSG00000042961 Egflam ENSMUST00000162105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042961 Egflam ENSMUST00000058593 ENSMUSP00000055599 TRANSLATION protein_coding - CCDS27370.1 1 1009.0 4.0 10.895 1.8 432.5 0.0 2,-1 1.0 16 13.0 PRINCIPAL:2 ENSMUSG00000042961 Egflam ENSMUST00000160207 ENSMUSP00000125188 TRANSLATION nonsense_mediated_decay - - 1 37.0 0.0 0.4 0.0 0.0 0.0 2,-1 0.0018 - -2.0 MINOR ENSMUSG00000040452 Cdh12 ENSMUST00000075132 ENSMUSP00000074632 TRANSLATION protein_coding - CCDS27396.1 1 794.0 45.0 9.1 22.0 436.9 1.0 1,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000040452 Cdh12 ENSMUST00000227496 ENSMUSP00000153750 TRANSLATION protein_coding - CCDS27396.1 - 794.0 45.0 9.1 22.0 436.9 1.0 1,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000040452 Cdh12 ENSMUST00000226407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022603 Mroh4 ENSMUST00000137963 ENSMUSP00000117011 TRANSLATION protein_coding - - 1 914.0 0.0 0.58 0.0 0.0 0.0 -4,-5 0.7286 3 6.0 PRINCIPAL:4 ENSMUSG00000022603 Mroh4 ENSMUST00000176767 ENSMUSP00000158942 TRANSLATION protein_coding start/stop - 5 385.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0424 2 -2.0 MINOR ENSMUSG00000022603 Mroh4 ENSMUST00000177179 - NO_TRANSLATION retained_intron ENSMUSG00000022603 Mroh4 ENSMUST00000175931 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022603 Mroh4 ENSMUST00000176592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022603 Mroh4 ENSMUST00000023271 ENSMUSP00000023271 TRANSLATION protein_coding - CCDS49636.1 1 983.0 0.0 0.58 0.0 0.0 0.0 -4,-6 0.5938 3 6.0 ALTERNATIVE:2 ENSMUSG00000022575 Gsdmd ENSMUST00000023238 ENSMUSP00000023238 TRANSLATION protein_coding - CCDS27551.1 1 487.0 0.0 10.45 3.0 572.2 0.0 -4,-5 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000022575 Gsdmd ENSMUST00000230571 - NO_TRANSLATION retained_intron ENSMUSG00000022575 Gsdmd ENSMUST00000230881 - NO_TRANSLATION retained_intron ENSMUSG00000022575 Gsdmd ENSMUST00000230514 ENSMUSP00000155766 TRANSLATION protein_coding stop - - 57.0 0.0 1.0 0.0 74.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022575 Gsdmd ENSMUST00000229331 ENSMUSP00000155802 TRANSLATION protein_coding stop - - 263.0 0.0 5.9 0.0 273.3 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000022575 Gsdmd ENSMUST00000231170 - NO_TRANSLATION retained_intron ENSMUSG00000054967 Zfp647 ENSMUST00000229055 ENSMUSP00000155685 TRANSLATION protein_coding - CCDS27596.1 - 535.0 52.0 3.42 2.2 359.6 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000054967 Zfp647 ENSMUST00000230677 ENSMUSP00000155660 TRANSLATION protein_coding stop - - 37.0 0.0 0.75 0.0 33.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000054967 Zfp647 ENSMUST00000048854 ENSMUSP00000041575 TRANSLATION protein_coding - CCDS27596.1 1 535.0 52.0 3.42 2.2 359.6 0.0 -4,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000054967 Zfp647 ENSMUST00000229865 ENSMUSP00000155272 TRANSLATION protein_coding stop - - 157.0 0.0 2.42 0.0 75.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022332 Khdrbs3 ENSMUST00000229534 - NO_TRANSLATION retained_intron ENSMUSG00000022332 Khdrbs3 ENSMUST00000230073 ENSMUSP00000155218 TRANSLATION protein_coding stop - - 126.0 0.0 3.1 0.0 30.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000022332 Khdrbs3 ENSMUST00000229683 ENSMUSP00000155136 TRANSLATION nonsense_mediated_decay - CCDS27513.1 - 346.0 0.0 4.715 20.0 194.2 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000022332 Khdrbs3 ENSMUST00000230847 ENSMUSP00000154871 TRANSLATION protein_coding - - - 258.0 0.0 2.715 0.0 163.9 0.0 -4,-5 0.0003 2 6.18 MINOR ENSMUSG00000022332 Khdrbs3 ENSMUST00000229234 ENSMUSP00000154887 TRANSLATION nonsense_mediated_decay - CCDS27513.1 - 346.0 0.0 4.715 20.0 194.2 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000022332 Khdrbs3 ENSMUST00000022954 ENSMUSP00000022954 TRANSLATION protein_coding - CCDS27513.1 1 346.0 0.0 4.715 20.0 194.2 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000059323 Tonsl ENSMUST00000168432 - NO_TRANSLATION retained_intron ENSMUSG00000059323 Tonsl ENSMUST00000163161 - NO_TRANSLATION retained_intron ENSMUSG00000059323 Tonsl ENSMUST00000171478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059323 Tonsl ENSMUST00000163990 - NO_TRANSLATION retained_intron ENSMUSG00000059323 Tonsl ENSMUST00000168185 ENSMUSP00000129597 TRANSLATION protein_coding - CCDS27580.2 1 1363.0 0.0 5.79345 0.4 108.9 0.0 -4,-7 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000059323 Tonsl ENSMUST00000165163 ENSMUSP00000131229 TRANSLATION protein_coding start - 3 86.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000059323 Tonsl ENSMUST00000165190 ENSMUSP00000131368 TRANSLATION nonsense_mediated_decay - - 1 417.0 0.0 1.56845 0.0 19.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000059323 Tonsl ENSMUST00000166974 ENSMUSP00000126362 TRANSLATION protein_coding stop - 2 64.0 0.0 0.264 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000009739 Pou6f1 ENSMUST00000176271 ENSMUSP00000145707 TRANSLATION protein_coding - - 1 301.0 0.0 2.0 1.1 170.2 0.0 -4,-7 0.3094 1 8.125 ALTERNATIVE:2 ENSMUSG00000009739 Pou6f1 ENSMUST00000230790 - NO_TRANSLATION retained_intron ENSMUSG00000009739 Pou6f1 ENSMUST00000177335 - NO_TRANSLATION retained_intron ENSMUSG00000009739 Pou6f1 ENSMUST00000073837 ENSMUSP00000073504 TRANSLATION protein_coding - CCDS79411.1 1 576.0 0.0 2.0 1.8 170.2 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:2 ENSMUSG00000009739 Pou6f1 ENSMUST00000177202 ENSMUSP00000135415 TRANSLATION nonsense_mediated_decay - - 2 145.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009739 Pou6f1 ENSMUST00000205510 - NO_TRANSLATION retained_intron ENSMUSG00000009739 Pou6f1 ENSMUST00000176140 ENSMUSP00000135670 TRANSLATION nonsense_mediated_decay start - 5 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009739 Pou6f1 ENSMUST00000177247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009739 Pou6f1 ENSMUST00000177505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009739 Pou6f1 ENSMUST00000176300 ENSMUSP00000134880 TRANSLATION nonsense_mediated_decay - - 2 145.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000064284 Cdpf1 ENSMUST00000144067 ENSMUSP00000119728 TRANSLATION protein_coding - CCDS27722.1 2 119.0 3.0 3.0 6.1 128.5 0.0 -4,-5 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000064284 Cdpf1 ENSMUST00000134631 ENSMUSP00000121889 TRANSLATION protein_coding - CCDS27722.1 5 119.0 3.0 3.0 6.1 128.5 0.0 -4,-5 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000064284 Cdpf1 ENSMUST00000125947 ENSMUSP00000114528 TRANSLATION protein_coding - CCDS27722.1 2 119.0 3.0 3.0 6.1 128.5 0.0 -4,-5 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000064284 Cdpf1 ENSMUST00000071876 ENSMUSP00000071772 TRANSLATION protein_coding - CCDS27722.1 1 119.0 3.0 3.0 6.1 128.5 0.0 -4,-5 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000064284 Cdpf1 ENSMUST00000150995 ENSMUSP00000123174 TRANSLATION protein_coding - CCDS27722.1 3 119.0 3.0 3.0 6.1 128.5 0.0 -4,-5 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000064284 Cdpf1 ENSMUST00000154814 ENSMUSP00000116823 TRANSLATION protein_coding stop - 2 84.0 2.0 2.0 0.0 79.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000089678 Agxt2 ENSMUST00000110541 ENSMUSP00000106170 TRANSLATION protein_coding - - 2 234.0 7.0 4.864 0.0 115.8 0.0 -4,0 0.0004 6 2.664 MINOR ENSMUSG00000089678 Agxt2 ENSMUST00000110540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089678 Agxt2 ENSMUST00000022858 ENSMUSP00000022858 TRANSLATION protein_coding - CCDS27378.1 2 541.0 12.0 12.958 0.3 311.0 0.0 -4,0 0.1742 16 17.952 MINOR ENSMUSG00000089678 Agxt2 ENSMUST00000110542 ENSMUSP00000106171 TRANSLATION protein_coding - CCDS79362.1 1 513.0 12.0 12.6 11.0 311.8 0.0 -4,0 1.0 17 20.286 PRINCIPAL:1 ENSMUSG00000096210 H1f0 ENSMUST00000180086 ENSMUSP00000137309 TRANSLATION protein_coding - CCDS56990.1 - 194.0 0.0 1.0 3.7 96.9 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000022385 Gtse1 ENSMUST00000231074 ENSMUSP00000155552 TRANSLATION protein_coding - CCDS27725.1 - 741.0 0.0 0.0 0.0 195.3 0.0 -4,-5 1.0 11 6.0 PRINCIPAL:1 ENSMUSG00000022385 Gtse1 ENSMUST00000170629 ENSMUSP00000128759 TRANSLATION protein_coding - CCDS27725.1 1 741.0 0.0 0.0 0.0 195.3 0.0 -4,-5 1.0 11 6.0 PRINCIPAL:1 ENSMUSG00000058354 Krt6a ENSMUST00000023788 ENSMUSP00000023788 TRANSLATION protein_coding - CCDS27860.1 1 553.0 0.0 4.75 0.1 503.3 0.0 -4,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000058354 Krt6a ENSMUST00000230205 - NO_TRANSLATION retained_intron ENSMUSG00000022296 Baalc ENSMUST00000163313 ENSMUSP00000132788 TRANSLATION protein_coding - - 1 123.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0004 3 0.0 MINOR ENSMUSG00000022296 Baalc ENSMUST00000226440 ENSMUSP00000154447 TRANSLATION protein_coding - - - 145.0 0.0 0.0 10.3 105.0 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000022296 Baalc ENSMUST00000239553 ENSMUSP00000159442 TRANSLATION protein_coding - - - 54.0 0.0 0.0 2.7 105.0 0.0 -4,-5 0.1929 - 6.549 MINOR ENSMUSG00000059460 Or10ad1b ENSMUST00000073612 ENSMUSP00000154601 TRANSLATION protein_coding - - 3 324.0 0.0 1.0 2.3 174.2 6.0 -4,-7 0.8855 - 13.0 PRINCIPAL:1 ENSMUSG00000059460 Or10ad1b ENSMUST00000205305 ENSMUSP00000154542 TRANSLATION protein_coding start - - 322.0 0.0 1.0 2.3 174.2 6.0 -4,-7 0.6385 - -2.0 MINOR ENSMUSG00000059460 Or10ad1b ENSMUST00000205393 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059460 Or10ad1b ENSMUST00000206621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000018042 Cyb5r3 ENSMUST00000162834 ENSMUSP00000124062 TRANSLATION protein_coding - - 5 278.0 22.0 7.0 5.8 245.3 0.0 -4,-5 0.3246 18 19.08 MINOR ENSMUSG00000018042 Cyb5r3 ENSMUST00000018186 ENSMUSP00000018186 TRANSLATION protein_coding - CCDS27698.1 1 301.0 22.0 7.0 18.8 245.3 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000018042 Cyb5r3 ENSMUST00000162178 ENSMUSP00000125636 TRANSLATION protein_coding - - 1 313.0 20.0 6.0 0.0 200.3 0.0 -4,-5 0.0107 16 11.97 MINOR ENSMUSG00000022261 Sdc2 ENSMUST00000022871 ENSMUSP00000022871 TRANSLATION protein_coding - CCDS27413.1 1 202.0 0.0 1.0 17.5 104.0 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000022292 Rrm2b ENSMUST00000145155 ENSMUSP00000120215 TRANSLATION protein_coding stop - 2 47.0 0.0 1.5 0.0 70.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022292 Rrm2b ENSMUST00000227688 - NO_TRANSLATION retained_intron ENSMUSG00000022292 Rrm2b ENSMUST00000144498 ENSMUSP00000121069 TRANSLATION nonsense_mediated_decay - - 3 111.0 1.0 3.0 0.0 105.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022292 Rrm2b ENSMUST00000146821 ENSMUSP00000123691 TRANSLATION protein_coding - - 5 139.0 2.0 2.85 0.0 103.8 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000022292 Rrm2b ENSMUST00000137636 ENSMUSP00000119400 TRANSLATION protein_coding - - 5 299.0 6.0 6.93 1.1 361.2 0.0 -4,-5 0.033 2 11.318 MINOR ENSMUSG00000022292 Rrm2b ENSMUST00000145175 ENSMUSP00000114343 TRANSLATION protein_coding stop - 5 99.0 1.0 3.08 0.0 113.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022292 Rrm2b ENSMUST00000022901 ENSMUSP00000022901 TRANSLATION protein_coding - CCDS27437.1 1 351.0 6.0 8.68 13.3 414.8 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000022292 Rrm2b ENSMUST00000127362 - NO_TRANSLATION retained_intron ENSMUSG00000022292 Rrm2b ENSMUST00000153481 ENSMUSP00000121188 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022992 Kansl2 ENSMUST00000023727 ENSMUSP00000023727 TRANSLATION protein_coding - - 5 452.0 0.0 0.0 4.2 114.6 0.0 -4,-1 0.2589 6 6.933 MINOR ENSMUSG00000022992 Kansl2 ENSMUST00000230542 ENSMUSP00000155089 TRANSLATION protein_coding - CCDS37190.1 - 486.0 0.0 0.0 11.3 114.6 0.0 -4,-1 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000022992 Kansl2 ENSMUST00000231066 ENSMUSP00000155461 TRANSLATION nonsense_mediated_decay - - - 157.0 0.0 0.0 0.0 63.8 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000022992 Kansl2 ENSMUST00000116400 ENSMUSP00000112101 TRANSLATION protein_coding - - 1 452.0 0.0 0.0 4.2 114.6 0.0 -4,-1 0.2589 6 6.933 MINOR ENSMUSG00000022992 Kansl2 ENSMUST00000229818 - NO_TRANSLATION retained_intron ENSMUSG00000075394 Hoxc4 ENSMUST00000165375 ENSMUSP00000133561 TRANSLATION protein_coding - - 1 151.0 0.0 0.0 3.0 0.0 0.0 -4,-5 0.0636 1 0.681 MINOR ENSMUSG00000075394 Hoxc4 ENSMUST00000100164 ENSMUSP00000097740 TRANSLATION protein_coding - CCDS27897.1 1 264.0 0.0 0.8 9.8 77.5 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000022364 Tbc1d31 ENSMUST00000110175 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022364 Tbc1d31 ENSMUST00000022992 ENSMUSP00000022992 TRANSLATION protein_coding - CCDS37077.2 1 996.0 0.0 2.72 1.1 35.6 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000022364 Tbc1d31 ENSMUST00000160098 - NO_TRANSLATION retained_intron ENSMUSG00000022364 Tbc1d31 ENSMUST00000161329 ENSMUSP00000124466 TRANSLATION protein_coding start - 5 234.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 2 -2.0 MINOR ENSMUSG00000022364 Tbc1d31 ENSMUST00000159775 ENSMUSP00000124243 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000022364 Tbc1d31 ENSMUST00000162157 - NO_TRANSLATION retained_intron ENSMUSG00000022364 Tbc1d31 ENSMUST00000159801 - NO_TRANSLATION retained_intron ENSMUSG00000022466 Rpap3 ENSMUST00000229109 - NO_TRANSLATION retained_intron ENSMUSG00000022466 Rpap3 ENSMUST00000023104 ENSMUSP00000023104 TRANSLATION protein_coding - CCDS27782.1 1 660.0 0.0 10.45 3.2 163.8 0.0 -4,-5 1.0 19 13.0 PRINCIPAL:1 ENSMUSG00000022466 Rpap3 ENSMUST00000229008 - NO_TRANSLATION retained_intron ENSMUSG00000022354 Ndufb9 ENSMUST00000228595 - NO_TRANSLATION retained_intron ENSMUSG00000022354 Ndufb9 ENSMUST00000022980 ENSMUSP00000022980 TRANSLATION protein_coding - CCDS27495.1 1 179.0 0.0 4.0 11.5 42.7 0.0 -4,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000050463 Krt78 ENSMUST00000164932 ENSMUSP00000126197 TRANSLATION protein_coding - CCDS49736.1 1 1068.0 0.0 3.665 0.0 341.1 0.0 -3,1 1.0 45 12.0 PRINCIPAL:1 ENSMUSG00000038679 Trps1 ENSMUST00000183421 ENSMUSP00000138835 TRANSLATION protein_coding - - 1 229.0 3.0 0.0 0.0 0.0 0.0 -4,-2 0.0007 5 0.0 MINOR ENSMUSG00000038679 Trps1 ENSMUST00000184885 ENSMUSP00000138905 TRANSLATION protein_coding - - 1 1035.0 22.0 1.0 0.0 46.6 0.0 -4,-5 0.1354 11 9.146 MINOR ENSMUSG00000038679 Trps1 ENSMUST00000184458 ENSMUSP00000139063 TRANSLATION protein_coding - - 1 994.0 24.0 1.0 0.0 46.6 0.0 -4,-2 0.1247 14 10.484 MINOR ENSMUSG00000038679 Trps1 ENSMUST00000183757 ENSMUSP00000139017 TRANSLATION protein_coding - CCDS79370.1 1 1285.0 28.0 1.0 15.9 46.6 0.0 -4,-6 0.9873 16 17.12 ALTERNATIVE:1 ENSMUSG00000038679 Trps1 ENSMUST00000183997 ENSMUSP00000139115 TRANSLATION protein_coding - CCDS79371.1 1 1096.0 22.0 1.165 0.0 46.6 0.0 -4,-6 0.3466 12 9.998 MINOR ENSMUSG00000038679 Trps1 ENSMUST00000185183 ENSMUSP00000138967 TRANSLATION protein_coding stop - 2 255.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000038679 Trps1 ENSMUST00000165201 ENSMUSP00000129779 TRANSLATION protein_coding - CCDS27460.1 1 1281.0 28.0 1.0 16.0 46.6 0.0 -4,-5 1.0 16 17.148 PRINCIPAL:4 ENSMUSG00000016554 Eif3d ENSMUST00000229784 - NO_TRANSLATION retained_intron ENSMUSG00000016554 Eif3d ENSMUST00000100484 ENSMUSP00000098053 TRANSLATION protein_coding - CCDS37130.1 1 548.0 0.0 9.7 11.0 723.1 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000016554 Eif3d ENSMUST00000229413 - NO_TRANSLATION retained_intron ENSMUSG00000016554 Eif3d ENSMUST00000229824 - NO_TRANSLATION retained_intron ENSMUSG00000016554 Eif3d ENSMUST00000230419 ENSMUSP00000155152 TRANSLATION protein_coding stop - - 169.0 0.0 1.7 0.0 119.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000016554 Eif3d ENSMUST00000229713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016554 Eif3d ENSMUST00000230711 - NO_TRANSLATION retained_intron ENSMUSG00000016554 Eif3d ENSMUST00000229737 - NO_TRANSLATION retained_intron ENSMUSG00000048385 Scrt1 ENSMUST00000096365 ENSMUSP00000094093 TRANSLATION protein_coding - CCDS37123.1 1 348.0 19.0 0.4 4.9 105.8 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000022335 Zfat ENSMUST00000159430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022335 Zfat ENSMUST00000160248 ENSMUSP00000125257 TRANSLATION protein_coding - CCDS49623.1 1 1237.0 69.0 4.241 4.0 139.7 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000022335 Zfat ENSMUST00000161139 - NO_TRANSLATION retained_intron ENSMUSG00000022335 Zfat ENSMUST00000162173 ENSMUSP00000124974 TRANSLATION protein_coding - - 5 1152.0 69.0 4.175 0.0 139.7 0.0 -4,-5 0.1813 3 17.868 MINOR ENSMUSG00000022335 Zfat ENSMUST00000162054 ENSMUSP00000125732 TRANSLATION protein_coding - CCDS49624.1 1 1219.0 69.0 4.241 0.1 139.7 0.0 -4,-5 0.4558 3 18.0 MINOR ENSMUSG00000022435 Upk3a ENSMUST00000023070 ENSMUSP00000023070 TRANSLATION protein_coding - CCDS27716.1 1 287.0 0.0 3.75 6.9 0.0 0.0 3,-2 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000022477 Aco2 ENSMUST00000229068 ENSMUSP00000155818 TRANSLATION protein_coding stop - - 194.0 6.0 4.6 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000022477 Aco2 ENSMUST00000231075 - NO_TRANSLATION retained_intron ENSMUSG00000022477 Aco2 ENSMUST00000135198 ENSMUSP00000155234 TRANSLATION protein_coding - - 2 58.0 0.0 1.23 0.0 0.0 0.0 -4,0 0.0004 3 0.0 MINOR ENSMUSG00000022477 Aco2 ENSMUST00000144324 - NO_TRANSLATION retained_intron ENSMUSG00000022477 Aco2 ENSMUST00000126352 - NO_TRANSLATION retained_intron ENSMUSG00000022477 Aco2 ENSMUST00000023116 ENSMUSP00000023116 TRANSLATION protein_coding - CCDS27675.1 1 780.0 23.0 17.98 32.0 161.0 0.0 -4,0 1.0 46 22.0 PRINCIPAL:1 ENSMUSG00000022477 Aco2 ENSMUST00000157003 ENSMUSP00000154821 TRANSLATION protein_coding - - 2 77.0 0.0 0.73 0.0 0.0 0.0 -4,0 0.0004 - 0.0 MINOR ENSMUSG00000022477 Aco2 ENSMUST00000155704 - NO_TRANSLATION retained_intron ENSMUSG00000022477 Aco2 ENSMUST00000231091 ENSMUSP00000154939 TRANSLATION protein_coding stop - - 62.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000023004 Tuba1b ENSMUST00000077577 ENSMUSP00000076777 TRANSLATION protein_coding - CCDS37195.1 1 451.0 27.0 3.0 34.9 405.1 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000023004 Tuba1b ENSMUST00000140969 - NO_TRANSLATION retained_intron ENSMUSG00000022427 Tomm22 ENSMUST00000127292 ENSMUSP00000155226 TRANSLATION protein_coding - - 2 89.0 0.0 2.3 0.0 0.0 1.0 -4,-2 0.0204 4 4.926 MINOR ENSMUSG00000022427 Tomm22 ENSMUST00000023062 ENSMUSP00000023062 TRANSLATION protein_coding - CCDS27646.1 1 142.0 0.0 2.8 2.9 0.0 1.0 -4,-5 1.0 7 7.0 PRINCIPAL:1 ENSMUSG00000022427 Tomm22 ENSMUST00000229502 ENSMUSP00000155148 TRANSLATION nonsense_mediated_decay - - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0111 - -2.0 MINOR ENSMUSG00000022440 C1qtnf6 ENSMUST00000230943 ENSMUSP00000155188 TRANSLATION protein_coding stop - - 55.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000022440 C1qtnf6 ENSMUST00000137827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022440 C1qtnf6 ENSMUST00000023075 ENSMUSP00000023075 TRANSLATION protein_coding - CCDS37134.1 1 264.0 0.0 1.8 1.6 160.7 0.0 4,-1 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000022440 C1qtnf6 ENSMUST00000229185 ENSMUSP00000155221 TRANSLATION protein_coding - - - 100.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0029 - 0.0 MINOR ENSMUSG00000022440 C1qtnf6 ENSMUST00000147093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022400 Rbx1 ENSMUST00000231027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022400 Rbx1 ENSMUST00000229880 - NO_TRANSLATION retained_intron ENSMUSG00000022400 Rbx1 ENSMUST00000229991 - NO_TRANSLATION retained_intron ENSMUSG00000022400 Rbx1 ENSMUST00000023036 ENSMUSP00000023036 TRANSLATION protein_coding - CCDS49676.1 1 108.0 15.0 2.7 29.7 88.7 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000022400 Rbx1 ENSMUST00000230062 ENSMUSP00000154877 TRANSLATION protein_coding - - - 59.0 13.0 1.5 0.0 72.0 0.0 -4,-5 0.0013 1 12.876 MINOR ENSMUSG00000022400 Rbx1 ENSMUST00000230219 ENSMUSP00000155288 TRANSLATION protein_coding - - - 83.0 9.0 1.95 0.0 39.6 0.0 -4,-5 0.0 - 9.006 MINOR ENSMUSG00000033576 Apol6 ENSMUST00000142405 ENSMUSP00000117135 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033576 Apol6 ENSMUST00000148197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033576 Apol6 ENSMUST00000129468 ENSMUSP00000123663 TRANSLATION protein_coding stop - 2 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033576 Apol6 ENSMUST00000149569 ENSMUSP00000120866 TRANSLATION protein_coding - CCDS49655.1 1 321.0 0.0 0.0 0.0 245.8 0.0 -4,-5 1.0 1 0.0 PRINCIPAL:2 ENSMUSG00000033576 Apol6 ENSMUST00000127957 ENSMUSP00000118257 TRANSLATION protein_coding - CCDS49656.1 2 329.0 0.0 0.0 0.0 245.8 0.0 -4,-5 0.4204 1 0.0 ALTERNATIVE:2 ENSMUSG00000033576 Apol6 ENSMUST00000152949 ENSMUSP00000121308 TRANSLATION protein_coding stop - 3 262.0 0.0 0.0 0.0 220.7 0.0 -4,-5 0.0151 1 -2.0 MINOR ENSMUSG00000033576 Apol6 ENSMUST00000139304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022370 Mrpl13 ENSMUST00000107207 - NO_TRANSLATION retained_intron ENSMUSG00000022370 Mrpl13 ENSMUST00000165356 ENSMUSP00000125887 TRANSLATION protein_coding start - 5 98.0 0.0 2.91 0.0 69.3 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000022370 Mrpl13 ENSMUST00000164542 ENSMUSP00000127456 TRANSLATION nonsense_mediated_decay - - 1 58.0 0.0 1.33 0.0 27.7 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000022370 Mrpl13 ENSMUST00000172387 ENSMUSP00000130722 TRANSLATION protein_coding - CCDS27477.1 1 178.0 0.0 5.32 35.1 155.7 0.0 -4,-1 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000022370 Mrpl13 ENSMUST00000170135 - NO_TRANSLATION retained_intron ENSMUSG00000001656 Hoxc11 ENSMUST00000001701 ENSMUSP00000001701 TRANSLATION protein_coding - CCDS27892.1 1 304.0 0.0 1.0 15.0 235.7 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000022386 Trmu ENSMUST00000162601 - NO_TRANSLATION retained_intron ENSMUSG00000022386 Trmu ENSMUST00000162010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022386 Trmu ENSMUST00000162339 ENSMUSP00000125266 TRANSLATION nonsense_mediated_decay start - 5 58.0 3.0 0.764 0.0 23.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022386 Trmu ENSMUST00000161784 - NO_TRANSLATION retained_intron ENSMUSG00000022386 Trmu ENSMUST00000159730 - NO_TRANSLATION retained_intron ENSMUSG00000022386 Trmu ENSMUST00000023019 ENSMUSP00000023019 TRANSLATION protein_coding - CCDS27726.1 1 417.0 16.0 6.621 5.4 469.2 0.0 -2,0 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000022386 Trmu ENSMUST00000160733 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022386 Trmu ENSMUST00000159362 - NO_TRANSLATION retained_intron ENSMUSG00000022386 Trmu ENSMUST00000162491 ENSMUSP00000125704 TRANSLATION nonsense_mediated_decay - - 3 99.0 8.0 1.55 0.0 108.2 0.0 -2,0 0.0 3 -2.0 MINOR ENSMUSG00000094806 Cyp2d10 ENSMUST00000230198 ENSMUSP00000155626 TRANSLATION protein_coding - - - 450.0 27.0 8.146 0.0 335.6 2.0 -1,-5 0.0061 4 5.472 MINOR ENSMUSG00000094806 Cyp2d10 ENSMUST00000230843 ENSMUSP00000155572 TRANSLATION protein_coding start/stop - - 282.0 22.0 6.08 0.0 290.2 0.0 -4,-5 0.0002 3 -2.0 MINOR ENSMUSG00000094806 Cyp2d10 ENSMUST00000072776 ENSMUSP00000072555 TRANSLATION protein_coding - CCDS27690.1 1 504.0 30.0 10.41 5.6 472.7 2.0 -1,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000094806 Cyp2d10 ENSMUST00000229628 ENSMUSP00000155493 TRANSLATION nonsense_mediated_decay - - - 176.0 5.0 3.75 0.0 114.9 2.0 -1,-5 0.0031 - -2.0 MINOR ENSMUSG00000094806 Cyp2d10 ENSMUST00000230248 ENSMUSP00000155651 TRANSLATION protein_coding stop - - 130.0 1.0 3.08 0.0 66.3 2.0 -1,-5 0.0026 - -2.0 MINOR ENSMUSG00000094806 Cyp2d10 ENSMUST00000229911 ENSMUSP00000155800 TRANSLATION protein_coding - - - 335.0 18.0 7.08 0.0 270.2 2.0 -1,-5 0.0044 1 0.0 MINOR ENSMUSG00000072664 Ugt3a1 ENSMUST00000145326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072664 Ugt3a1 ENSMUST00000176173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072664 Ugt3a1 ENSMUST00000175695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072664 Ugt3a1 ENSMUST00000176878 ENSMUSP00000135760 TRANSLATION protein_coding stop - 3 43.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000072664 Ugt3a1 ENSMUST00000022861 ENSMUSP00000022861 TRANSLATION protein_coding - CCDS27374.1 1 523.0 16.0 5.66 4.3 324.7 0.0 3,-2 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000038984 Tspyl5 ENSMUST00000042021 ENSMUSP00000045542 TRANSLATION protein_coding - CCDS49591.1 - 406.0 0.0 0.4 0.0 68.7 0.0 -4,-7 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000094112 9330182O14Rik ENSMUST00000179120 ENSMUSP00000136675 TRANSLATION protein_coding - CCDS56983.1 5 140.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.881 - 0.0 PRINCIPAL:1 ENSMUSG00000094112 9330182O14Rik ENSMUST00000228780 ENSMUSP00000154680 TRANSLATION protein_coding - CCDS56983.1 - 140.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.881 - 0.0 PRINCIPAL:1 ENSMUSG00000037106 Fer1l6 ENSMUST00000159177 - NO_TRANSLATION retained_intron ENSMUSG00000037106 Fer1l6 ENSMUST00000159705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037106 Fer1l6 ENSMUST00000161028 ENSMUSP00000125718 TRANSLATION protein_coding - - 5 1862.0 14.0 2.484 4.9 523.9 0.0 -4,-5 0.9933 11 20.0 PRINCIPAL:1 ENSMUSG00000022146 Osmr ENSMUST00000176826 ENSMUSP00000135204 TRANSLATION protein_coding - CCDS79358.1 1 970.0 0.0 4.933 2.3 26.9 1.0 3,-1 1.0 8 7.0 PRINCIPAL:4 ENSMUSG00000022146 Osmr ENSMUST00000176554 - NO_TRANSLATION retained_intron ENSMUSG00000022146 Osmr ENSMUST00000022746 ENSMUSP00000022746 TRANSLATION protein_coding - CCDS27368.1 1 971.0 0.0 4.898 2.3 26.9 1.0 3,-1 0.9905 8 6.928 ALTERNATIVE:2 ENSMUSG00000022146 Osmr ENSMUST00000177478 - NO_TRANSLATION retained_intron ENSMUSG00000022146 Osmr ENSMUST00000175862 - NO_TRANSLATION retained_intron ENSMUSG00000022146 Osmr ENSMUST00000177263 - NO_TRANSLATION retained_intron ENSMUSG00000071711 Mpst ENSMUST00000167140 ENSMUSP00000130493 TRANSLATION protein_coding - CCDS27615.1 5 297.0 5.0 4.0 23.5 102.9 0.0 -3,-1 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000071711 Mpst ENSMUST00000229791 ENSMUSP00000155018 TRANSLATION protein_coding stop - - 55.0 0.0 1.0 0.0 0.0 0.0 -2,0 0.0 2 -2.0 MINOR ENSMUSG00000071711 Mpst ENSMUST00000231159 ENSMUSP00000155399 TRANSLATION protein_coding stop - - 169.0 2.0 2.0 0.0 57.5 0.0 -3,-1 0.0004 6 -2.0 MINOR ENSMUSG00000071711 Mpst ENSMUST00000229739 ENSMUSP00000155371 TRANSLATION protein_coding - CCDS27615.1 - 297.0 5.0 4.0 23.5 102.9 0.0 -3,-1 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000071711 Mpst ENSMUST00000169133 ENSMUSP00000128075 TRANSLATION protein_coding - CCDS27615.1 5 297.0 5.0 4.0 23.5 102.9 0.0 -3,-1 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000071711 Mpst ENSMUST00000043865 ENSMUSP00000043061 TRANSLATION protein_coding - CCDS27615.1 1 297.0 5.0 4.0 23.5 102.9 0.0 -3,-1 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000022365 Derl1 ENSMUST00000226911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022365 Derl1 ENSMUST00000022993 ENSMUSP00000022993 TRANSLATION protein_coding - CCDS27484.1 1 251.0 0.0 5.58 28.2 247.3 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000054855 Rnd1 ENSMUST00000003451 ENSMUSP00000003451 TRANSLATION protein_coding - CCDS27801.1 1 232.0 23.0 5.0 33.4 122.1 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000054855 Rnd1 ENSMUST00000120997 ENSMUSP00000113830 TRANSLATION protein_coding - - 1 168.0 20.0 4.0 0.0 106.9 0.0 -4,-7 0.0017 2 13.092 MINOR ENSMUSG00000054855 Rnd1 ENSMUST00000109149 ENSMUSP00000104777 TRANSLATION protein_coding - - 1 187.0 23.0 4.0 0.0 106.9 0.0 -4,-7 0.0038 2 15.09 MINOR ENSMUSG00000004187 Kifc2 ENSMUST00000004294 ENSMUSP00000004294 TRANSLATION protein_coding - CCDS27583.1 1 792.0 11.0 4.08 1.1 298.9 0.0 -1,-5 1.0 10 13.0 PRINCIPAL:2 ENSMUSG00000004187 Kifc2 ENSMUST00000230124 - NO_TRANSLATION retained_intron ENSMUSG00000004187 Kifc2 ENSMUST00000229112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004187 Kifc2 ENSMUST00000230451 ENSMUSP00000155536 TRANSLATION protein_coding - - - 707.0 11.0 4.08 0.4 298.9 0.0 -4,-7 0.0768 10 12.0 ALTERNATIVE:2 ENSMUSG00000004187 Kifc2 ENSMUST00000230964 ENSMUSP00000155559 TRANSLATION nonsense_mediated_decay - - - 162.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000004187 Kifc2 ENSMUST00000229513 - NO_TRANSLATION retained_intron ENSMUSG00000071716 Apol7e ENSMUST00000096358 ENSMUSP00000094085 TRANSLATION protein_coding - CCDS49663.1 1 369.0 0.0 1.4 0.4 394.3 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071716 Apol7e ENSMUST00000229450 - NO_TRANSLATION retained_intron ENSMUSG00000022377 Asap1 ENSMUST00000175963 ENSMUSP00000135047 TRANSLATION protein_coding stop - 2 98.0 0.0 1.3 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000176821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022377 Asap1 ENSMUST00000176909 - NO_TRANSLATION retained_intron ENSMUSG00000022377 Asap1 ENSMUST00000177475 - NO_TRANSLATION retained_intron ENSMUSG00000022377 Asap1 ENSMUST00000176014 ENSMUSP00000135172 TRANSLATION protein_coding - - 5 1144.0 6.0 15.414 0.1 325.6 0.0 -4,-2 0.266 29 18.0 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000023008 ENSMUSP00000023008 TRANSLATION protein_coding - - 5 1147.0 6.0 15.289 0.1 325.6 0.0 -4,-2 0.258 29 17.748 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000176516 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022377 Asap1 ENSMUST00000177374 ENSMUSP00000134825 TRANSLATION protein_coding - CCDS56986.1 1 1147.0 6.0 15.414 0.1 325.6 0.0 -4,-2 0.4039 29 18.0 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000177083 ENSMUSP00000134877 TRANSLATION protein_coding - CCDS70632.1 1 1112.0 6.0 15.414 9.8 325.6 0.0 -4,-5 1.0 28 21.0 PRINCIPAL:1 ENSMUSG00000022377 Asap1 ENSMUST00000175710 - NO_TRANSLATION retained_intron ENSMUSG00000022377 Asap1 ENSMUST00000177035 ENSMUSP00000135346 TRANSLATION protein_coding - - 5 1075.0 6.0 15.414 0.1 325.6 0.0 -4,-2 0.2496 25 18.0 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000110115 ENSMUSP00000105742 TRANSLATION protein_coding - - 5 1132.0 6.0 15.414 0.1 325.6 0.0 -4,-2 0.2743 28 18.0 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000177371 ENSMUSP00000135643 TRANSLATION protein_coding - CCDS70631.1 1 1124.0 6.0 15.414 1.0 325.6 0.0 -4,-5 0.4757 29 18.0 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000175793 ENSMUSP00000135718 TRANSLATION protein_coding - - 5 1135.0 6.0 15.414 0.1 325.6 0.0 -4,-2 0.2707 28 18.0 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000175799 ENSMUSP00000135359 TRANSLATION protein_coding - CCDS70633.1 5 1087.0 6.0 15.414 0.1 325.6 0.0 -4,-2 0.4242 26 18.0 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000176358 ENSMUSP00000135239 TRANSLATION protein_coding start/stop - 5 211.0 0.0 2.15 0.0 72.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000110114 ENSMUSP00000105741 TRANSLATION protein_coding - - 5 1090.0 6.0 15.289 0.1 325.6 0.0 -4,-2 0.2649 26 17.748 MINOR ENSMUSG00000022377 Asap1 ENSMUST00000176427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022377 Asap1 ENSMUST00000176384 ENSMUSP00000135190 TRANSLATION protein_coding - CCDS70634.1 1 1090.0 6.0 15.414 0.1 325.6 0.0 -4,-2 0.4251 26 18.0 MINOR ENSMUSG00000009585 Apobec3 ENSMUST00000177350 ENSMUSP00000134938 TRANSLATION protein_coding stop - 5 166.0 2.0 2.216 0.0 103.4 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000009585 Apobec3 ENSMUST00000176644 - NO_TRANSLATION retained_intron ENSMUSG00000009585 Apobec3 ENSMUST00000177483 ENSMUSP00000135011 TRANSLATION protein_coding stop - 5 151.0 2.0 3.15 0.0 103.4 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000009585 Apobec3 ENSMUST00000177006 ENSMUSP00000135507 TRANSLATION nonsense_mediated_decay - - 1 46.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000009585 Apobec3 ENSMUST00000175752 ENSMUSP00000135358 TRANSLATION protein_coding - - 1 407.0 10.0 7.825 0.0 293.9 0.0 -4,-1 0.0967 9 13.34 ALTERNATIVE:2 ENSMUSG00000009585 Apobec3 ENSMUST00000177098 ENSMUSP00000135079 TRANSLATION nonsense_mediated_decay - - 1 392.0 10.0 8.155 0.0 293.9 0.0 -4,-1 0.1419 9 -2.0 MINOR ENSMUSG00000009585 Apobec3 ENSMUST00000176904 ENSMUSP00000135502 TRANSLATION protein_coding stop - 2 85.0 2.0 1.55 0.0 94.8 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000009585 Apobec3 ENSMUST00000175849 - NO_TRANSLATION retained_intron ENSMUSG00000009585 Apobec3 ENSMUST00000175801 - NO_TRANSLATION retained_intron ENSMUSG00000009585 Apobec3 ENSMUST00000176868 ENSMUSP00000135706 TRANSLATION nonsense_mediated_decay - - 3 79.0 0.0 0.8 0.0 38.0 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000009585 Apobec3 ENSMUST00000175827 - NO_TRANSLATION retained_intron ENSMUSG00000009585 Apobec3 ENSMUST00000230741 ENSMUSP00000155418 TRANSLATION protein_coding stop - - 62.0 0.0 1.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000009585 Apobec3 ENSMUST00000023054 ENSMUSP00000023054 TRANSLATION protein_coding - CCDS84179.1 1 297.0 7.0 6.125 0.0 210.4 0.0 -4,-6 0.0036 5 6.606 MINOR ENSMUSG00000009585 Apobec3 ENSMUST00000176823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009585 Apobec3 ENSMUST00000230410 - NO_TRANSLATION retained_intron ENSMUSG00000009585 Apobec3 ENSMUST00000230135 ENSMUSP00000155852 TRANSLATION protein_coding stop - - 97.0 5.0 2.475 0.0 49.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000009585 Apobec3 ENSMUST00000109620 ENSMUSP00000105249 TRANSLATION protein_coding - CCDS49669.1 1 429.0 10.0 7.925 0.0 293.9 0.0 -4,-2 0.3948 9 13.538 ALTERNATIVE:2 ENSMUSG00000009585 Apobec3 ENSMUST00000175714 ENSMUSP00000135027 TRANSLATION protein_coding - - 1 440.0 10.0 7.925 0.0 293.9 0.0 -4,-1 0.7647 9 13.538 PRINCIPAL:2 ENSMUSG00000009585 Apobec3 ENSMUST00000165537 ENSMUSP00000132391 TRANSLATION protein_coding - CCDS27654.1 1 396.0 10.0 7.825 0.0 293.9 0.0 -4,-2 0.2421 9 13.34 ALTERNATIVE:2 ENSMUSG00000009585 Apobec3 ENSMUST00000176325 ENSMUSP00000134838 TRANSLATION protein_coding - - 1 430.0 10.0 7.925 0.0 293.9 0.0 -4,-1 0.2085 9 13.538 ALTERNATIVE:2 ENSMUSG00000022359 Ntaq1 ENSMUST00000226889 ENSMUSP00000154176 TRANSLATION protein_coding - - - 83.0 0.0 2.5 0.0 70.3 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000022359 Ntaq1 ENSMUST00000227142 ENSMUSP00000154671 TRANSLATION protein_coding - - - 192.0 0.0 4.575 0.0 207.2 0.0 -4,-5 0.0003 1 8.442 MINOR ENSMUSG00000022359 Ntaq1 ENSMUST00000228761 ENSMUSP00000153923 TRANSLATION nonsense_mediated_decay - - - 82.0 0.0 2.5 0.0 71.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022359 Ntaq1 ENSMUST00000227615 - NO_TRANSLATION retained_intron ENSMUSG00000022359 Ntaq1 ENSMUST00000226955 ENSMUSP00000154254 TRANSLATION protein_coding - - - 80.0 0.0 2.2 0.4 50.6 0.0 -4,-5 0.0031 - 0.0 MINOR ENSMUSG00000022359 Ntaq1 ENSMUST00000228693 - NO_TRANSLATION retained_intron ENSMUSG00000022359 Ntaq1 ENSMUST00000067563 ENSMUSP00000064622 TRANSLATION protein_coding - CCDS27490.1 1 209.0 0.0 5.5 10.2 235.7 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000022359 Ntaq1 ENSMUST00000226425 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022359 Ntaq1 ENSMUST00000227048 - NO_TRANSLATION retained_intron ENSMUSG00000035757 Selenoo ENSMUST00000082439 ENSMUSP00000081020 TRANSLATION protein_coding - CCDS27738.1 1 667.0 0.0 3.489 0.1 0.0 0.0 -1,3 1.0 10 6.0 PRINCIPAL:1 ENSMUSG00000035757 Selenoo ENSMUST00000130700 ENSMUSP00000138382 TRANSLATION nonsense_mediated_decay - - 1 297.0 0.0 1.6 0.0 0.0 0.0 -1,3 0.0511 3 -2.0 MINOR ENSMUSG00000022476 Polr3h ENSMUST00000230765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022476 Polr3h ENSMUST00000230066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022476 Polr3h ENSMUST00000230050 ENSMUSP00000155181 TRANSLATION protein_coding - - - 175.0 0.0 3.73 6.2 177.8 0.0 -4,-5 0.1182 1 8.966 MINOR ENSMUSG00000022476 Polr3h ENSMUST00000229402 - NO_TRANSLATION retained_intron ENSMUSG00000022476 Polr3h ENSMUST00000230842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022476 Polr3h ENSMUST00000023113 ENSMUSP00000023113 TRANSLATION protein_coding - CCDS27676.1 1 204.0 0.0 4.48 25.9 217.3 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022476 Polr3h ENSMUST00000230669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072501 Phf20l1 ENSMUST00000231177 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072501 Phf20l1 ENSMUST00000230948 ENSMUSP00000155465 TRANSLATION protein_coding - - - 987.0 8.0 4.65 5.3 273.2 0.0 -4,-6 0.9957 11 19.588 PRINCIPAL:1 ENSMUSG00000072501 Phf20l1 ENSMUST00000230250 - NO_TRANSLATION retained_intron ENSMUSG00000072501 Phf20l1 ENSMUST00000229486 - NO_TRANSLATION retained_intron ENSMUSG00000072501 Phf20l1 ENSMUST00000230882 ENSMUSP00000155575 TRANSLATION protein_coding - - - 311.0 0.0 2.5 1.1 117.1 0.0 -4,-6 0.0304 5 1.736 MINOR ENSMUSG00000072501 Phf20l1 ENSMUST00000230915 - NO_TRANSLATION retained_intron ENSMUSG00000072501 Phf20l1 ENSMUST00000229033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072501 Phf20l1 ENSMUST00000230584 - NO_TRANSLATION retained_intron ENSMUSG00000072501 Phf20l1 ENSMUST00000229576 ENSMUSP00000155538 TRANSLATION nonsense_mediated_decay - - - 567.0 0.0 2.5 0.1 274.3 0.0 -4,-6 0.0845 10 -2.0 MINOR ENSMUSG00000072501 Phf20l1 ENSMUST00000229160 ENSMUSP00000155487 TRANSLATION protein_coding - CCDS49621.1 - 1013.0 8.0 3.9 6.2 273.2 0.0 -4,-6 1.0 10 18.434 MINOR ENSMUSG00000072501 Phf20l1 ENSMUST00000048188 ENSMUSP00000035682 TRANSLATION protein_coding - - 5 1014.0 8.0 3.9 0.0 274.3 0.0 -4,-6 0.1691 10 16.5 MINOR ENSMUSG00000072501 Phf20l1 ENSMUST00000229590 - NO_TRANSLATION retained_intron ENSMUSG00000058441 Panx2 ENSMUST00000161372 ENSMUSP00000125514 TRANSLATION protein_coding - - 1 651.0 0.0 0.431 0.0 38.7 4.0 -4,-7 0.4681 8 6.0 PRINCIPAL:1 ENSMUSG00000058441 Panx2 ENSMUST00000159960 ENSMUSP00000124928 TRANSLATION protein_coding start - 2 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058441 Panx2 ENSMUST00000162424 ENSMUSP00000124354 TRANSLATION protein_coding - CCDS49695.1 1 677.0 0.0 0.266 2.4 51.8 4.0 -4,-7 1.0 8 4.702 MINOR ENSMUSG00000022338 Eny2 ENSMUST00000226355 ENSMUSP00000154030 TRANSLATION nonsense_mediated_decay - - - 56.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022338 Eny2 ENSMUST00000226336 ENSMUSP00000154687 TRANSLATION nonsense_mediated_decay - - - 53.0 0.0 1.5 0.0 55.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022338 Eny2 ENSMUST00000228130 ENSMUSP00000154106 TRANSLATION nonsense_mediated_decay - - - 51.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022338 Eny2 ENSMUST00000226827 ENSMUSP00000154515 TRANSLATION protein_coding - - - 96.0 0.0 3.0 36.6 123.1 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000022338 Eny2 ENSMUST00000232045 - NO_TRANSLATION retained_intron ENSMUSG00000022338 Eny2 ENSMUST00000060652 ENSMUSP00000052905 TRANSLATION protein_coding - CCDS27456.1 1 101.0 0.0 3.0 11.0 123.1 0.0 -4,-6 0.5281 3 13.124 MINOR ENSMUSG00000022338 Eny2 ENSMUST00000232353 - NO_TRANSLATION retained_intron ENSMUSG00000022338 Eny2 ENSMUST00000228372 - NO_TRANSLATION retained_intron ENSMUSG00000022338 Eny2 ENSMUST00000227425 ENSMUSP00000154226 TRANSLATION nonsense_mediated_decay - - - 56.0 0.0 1.5 0.0 56.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022338 Eny2 ENSMUST00000228474 - NO_TRANSLATION retained_intron ENSMUSG00000055065 Ddx17 ENSMUST00000054014 ENSMUSP00000055535 TRANSLATION protein_coding - CCDS27643.1 1 652.0 20.0 10.25 3.9 274.0 0.0 -4,-5 1.0 20 15.414 PRINCIPAL:4 ENSMUSG00000055065 Ddx17 ENSMUST00000229431 ENSMUSP00000155737 TRANSLATION protein_coding - - - 407.0 20.0 9.25 0.0 224.8 0.0 -4,-5 0.031 14 10.502 MINOR ENSMUSG00000055065 Ddx17 ENSMUST00000229877 ENSMUSP00000155307 TRANSLATION protein_coding - - - 650.0 20.0 10.25 5.1 274.0 0.0 -4,-5 0.9474 20 16.0 ALTERNATIVE:1 ENSMUSG00000055065 Ddx17 ENSMUST00000231053 ENSMUSP00000155365 TRANSLATION protein_coding - - - 418.0 20.0 9.45 0.0 224.8 0.0 -4,-5 0.0009 14 10.898 MINOR ENSMUSG00000039676 Capsl ENSMUST00000042360 ENSMUSP00000035663 TRANSLATION protein_coding - CCDS37040.1 1 208.0 21.0 4.0 33.7 75.1 0.0 -4,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000039676 Capsl ENSMUST00000226688 ENSMUSP00000153958 TRANSLATION protein_coding - - - 138.0 13.0 3.0 0.0 35.9 0.0 -4,-6 0.0 2 7.536 MINOR ENSMUSG00000089715 Cbx6 ENSMUST00000127721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089715 Cbx6 ENSMUST00000148358 ENSMUSP00000119037 TRANSLATION protein_coding stop - 2 127.0 0.0 2.0 0.0 59.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000089715 Cbx6 ENSMUST00000109627 ENSMUSP00000105255 TRANSLATION protein_coding - CCDS37142.1 1 414.0 0.0 2.9 0.3 113.6 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000089715 Cbx6 ENSMUST00000129614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089715 Cbx6 ENSMUST00000109623 ENSMUSP00000105252 TRANSLATION protein_coding - - 5 133.0 0.0 2.9 0.0 59.6 0.0 -4,-5 0.0377 1 7.0 MINOR ENSMUSG00000089715 Cbx6 ENSMUST00000141345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089715 Cbx6 ENSMUST00000109625 ENSMUSP00000105253 TRANSLATION protein_coding - - 1 396.0 0.0 2.9 0.0 113.6 0.0 -4,-5 0.0523 2 8.0 ALTERNATIVE:2 ENSMUSG00000089715 Cbx6 ENSMUST00000230681 - NO_TRANSLATION retained_intron ENSMUSG00000056258 Kcnq3 ENSMUST00000183633 - NO_TRANSLATION retained_intron ENSMUSG00000056258 Kcnq3 ENSMUST00000183354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056258 Kcnq3 ENSMUST00000070256 ENSMUSP00000063380 TRANSLATION protein_coding - CCDS49619.1 1 873.0 0.0 7.932 1.1 514.9 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000033707 Lrrc24 ENSMUST00000146725 - NO_TRANSLATION retained_intron ENSMUSG00000033707 Lrrc24 ENSMUST00000146855 - NO_TRANSLATION retained_intron ENSMUSG00000033707 Lrrc24 ENSMUST00000049956 ENSMUSP00000061906 TRANSLATION protein_coding - CCDS27590.1 1 521.0 0.0 1.84 0.0 150.7 0.0 3,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000022422 Dscc1 ENSMUST00000023059 ENSMUSP00000023059 TRANSLATION protein_coding - CCDS27473.1 1 399.0 0.0 7.98 0.4 329.1 0.0 -4,-7 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000022422 Dscc1 ENSMUST00000110231 ENSMUSP00000105860 TRANSLATION protein_coding - - 1 462.0 0.0 7.98 0.0 314.0 0.0 -4,-7 0.0561 4 6.0 MINOR ENSMUSG00000022422 Dscc1 ENSMUST00000143523 - NO_TRANSLATION retained_intron ENSMUSG00000022484 Hoxc10 ENSMUST00000001699 ENSMUSP00000001699 TRANSLATION protein_coding - CCDS57014.1 1 342.0 0.0 1.0 11.0 72.2 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000022561 Gpaa1 ENSMUST00000230683 - NO_TRANSLATION retained_intron ENSMUSG00000022561 Gpaa1 ENSMUST00000163798 - NO_TRANSLATION retained_intron ENSMUSG00000022561 Gpaa1 ENSMUST00000023221 ENSMUSP00000023221 TRANSLATION protein_coding - CCDS37120.1 1 621.0 0.0 0.0 18.0 524.1 6.0 -3,-1 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000022561 Gpaa1 ENSMUST00000170121 ENSMUSP00000133173 TRANSLATION nonsense_mediated_decay start - 3 102.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000022561 Gpaa1 ENSMUST00000169378 ENSMUSP00000128507 TRANSLATION protein_coding stop - 2 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022561 Gpaa1 ENSMUST00000164680 - NO_TRANSLATION retained_intron ENSMUSG00000022561 Gpaa1 ENSMUST00000165179 - NO_TRANSLATION retained_intron ENSMUSG00000022561 Gpaa1 ENSMUST00000230818 - NO_TRANSLATION retained_intron ENSMUSG00000022561 Gpaa1 ENSMUST00000168948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022561 Gpaa1 ENSMUST00000172281 ENSMUSP00000132986 TRANSLATION protein_coding - - 5 561.0 0.0 0.0 0.0 524.1 5.0 -4,0 0.0914 7 6.0 MINOR ENSMUSG00000022561 Gpaa1 ENSMUST00000164972 ENSMUSP00000127108 TRANSLATION nonsense_mediated_decay - - 1 74.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000022561 Gpaa1 ENSMUST00000171005 - NO_TRANSLATION retained_intron ENSMUSG00000048424 Ranbp3l ENSMUST00000228227 - NO_TRANSLATION retained_intron ENSMUSG00000048424 Ranbp3l ENSMUST00000227191 ENSMUSP00000154327 TRANSLATION protein_coding - - - 491.0 0.0 3.6 3.5 48.2 0.0 -4,-6 0.9103 3 13.0 PRINCIPAL:1 ENSMUSG00000048424 Ranbp3l ENSMUST00000229662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058794 Nfe2 ENSMUST00000133600 ENSMUSP00000121817 TRANSLATION protein_coding - - 5 396.0 0.0 1.0 0.3 63.3 0.0 -4,0 0.1764 - 12.0 MINOR ENSMUSG00000058794 Nfe2 ENSMUST00000075192 ENSMUSP00000074684 TRANSLATION protein_coding - CCDS27900.1 1 373.0 0.0 1.0 11.0 63.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058794 Nfe2 ENSMUST00000156927 ENSMUSP00000114160 TRANSLATION protein_coding - CCDS27900.1 5 373.0 0.0 1.0 11.0 63.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058794 Nfe2 ENSMUST00000131364 ENSMUSP00000116158 TRANSLATION protein_coding stop - 5 185.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058794 Nfe2 ENSMUST00000134193 ENSMUSP00000123064 TRANSLATION protein_coding stop - 3 202.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058794 Nfe2 ENSMUST00000132438 ENSMUSP00000116079 TRANSLATION protein_coding stop - 2 71.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058794 Nfe2 ENSMUST00000154510 ENSMUSP00000116678 TRANSLATION protein_coding stop - 2 108.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000058794 Nfe2 ENSMUST00000132836 ENSMUSP00000120256 TRANSLATION protein_coding stop - 2 164.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058794 Nfe2 ENSMUST00000134554 ENSMUSP00000117474 TRANSLATION protein_coding - CCDS27900.1 2 373.0 0.0 1.0 11.0 63.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000058794 Nfe2 ENSMUST00000149111 ENSMUSP00000122476 TRANSLATION protein_coding - CCDS27900.1 1 373.0 0.0 1.0 11.0 63.3 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044294 Krt84 ENSMUST00000023720 ENSMUSP00000023720 TRANSLATION protein_coding - CCDS27853.1 1 603.0 0.0 4.75 0.1 478.4 0.0 -4,0 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000044294 Krt84 ENSMUST00000229893 - NO_TRANSLATION retained_intron ENSMUSG00000022987 Zfp641 ENSMUST00000023722 ENSMUSP00000023722 TRANSLATION protein_coding - - 1 408.0 20.0 0.6 0.1 107.8 0.0 -4,-5 0.0849 - 16.89 MINOR ENSMUSG00000022987 Zfp641 ENSMUST00000169721 ENSMUSP00000133212 TRANSLATION protein_coding - CCDS27789.1 1 422.0 20.0 0.6 11.0 126.3 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000116069 Gm49510 ENSMUST00000134703 ENSMUSP00000154996 TRANSLATION protein_coding,RT - - 5 596.0 0.0 4.715 0.0 300.7 0.0 -4,-7 0.778 - -2.0 PRINCIPAL:1 ENSMUSG00000075427 Or10ad1c ENSMUST00000154964 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075427 Or10ad1c ENSMUST00000165379 ENSMUSP00000132237 TRANSLATION protein_coding - CCDS49719.1 2 318.0 0.0 1.0 0.0 161.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022151 Ttc33 ENSMUST00000144653 ENSMUSP00000122250 TRANSLATION protein_coding stop - 3 163.0 0.0 2.75 0.0 0.0 0.0 -4,-7 0.0055 3 -2.0 MINOR ENSMUSG00000022151 Ttc33 ENSMUST00000022751 ENSMUSP00000022751 TRANSLATION protein_coding - CCDS27364.1 1 262.0 0.0 3.05 15.8 0.0 0.0 -4,-7 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000022151 Ttc33 ENSMUST00000118193 ENSMUSP00000114033 TRANSLATION protein_coding - CCDS27364.1 1 262.0 0.0 3.05 15.8 0.0 0.0 -4,-7 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000022151 Ttc33 ENSMUST00000141167 ENSMUSP00000121937 TRANSLATION protein_coding stop - 5 116.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.0095 2 -2.0 MINOR ENSMUSG00000022151 Ttc33 ENSMUST00000081640 ENSMUSP00000080345 TRANSLATION protein_coding - - 1 105.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0143 3 0.0 MINOR ENSMUSG00000022555 Dgat1 ENSMUST00000161499 - NO_TRANSLATION retained_intron ENSMUSG00000022555 Dgat1 ENSMUST00000230722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022555 Dgat1 ENSMUST00000162813 - NO_TRANSLATION retained_intron ENSMUSG00000022555 Dgat1 ENSMUST00000160293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022555 Dgat1 ENSMUST00000229569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022555 Dgat1 ENSMUST00000162354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022555 Dgat1 ENSMUST00000159908 - NO_TRANSLATION retained_intron ENSMUSG00000022555 Dgat1 ENSMUST00000231035 - NO_TRANSLATION retained_intron ENSMUSG00000022555 Dgat1 ENSMUST00000160294 - NO_TRANSLATION retained_intron ENSMUSG00000022555 Dgat1 ENSMUST00000230894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022555 Dgat1 ENSMUST00000159776 - NO_TRANSLATION retained_intron ENSMUSG00000022555 Dgat1 ENSMUST00000023214 ENSMUSP00000023214 TRANSLATION protein_coding - CCDS27573.1 1 498.0 0.0 12.0 0.1 206.6 0.0 -4,-7 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000022390 Zc3h7b ENSMUST00000230590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022390 Zc3h7b ENSMUST00000229044 - NO_TRANSLATION retained_intron ENSMUSG00000022390 Zc3h7b ENSMUST00000109554 ENSMUSP00000105181 TRANSLATION protein_coding - CCDS37150.1 1 982.0 19.0 2.498 0.4 76.4 0.0 -4,-5 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000022390 Zc3h7b ENSMUST00000231108 - NO_TRANSLATION retained_intron ENSMUSG00000022390 Zc3h7b ENSMUST00000230946 ENSMUSP00000155100 TRANSLATION protein_coding stop - - 151.0 0.0 1.53034 0.0 31.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022390 Zc3h7b ENSMUST00000230368 - NO_TRANSLATION retained_intron ENSMUSG00000044217 Aqp5 ENSMUST00000169082 ENSMUSP00000127611 TRANSLATION protein_coding - CCDS27823.1 1 265.0 6.0 4.125 28.5 246.5 9.0 0,-3 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000044217 Aqp5 ENSMUST00000229264 - NO_TRANSLATION retained_intron ENSMUSG00000044217 Aqp5 ENSMUST00000230998 - NO_TRANSLATION retained_intron ENSMUSG00000044217 Aqp5 ENSMUST00000229728 ENSMUSP00000155623 TRANSLATION protein_coding - - - 241.0 5.0 1.0 0.0 120.0 3.0 0,-3 0.0028 1 4.998 MINOR ENSMUSG00000044217 Aqp5 ENSMUST00000231163 ENSMUSP00000155212 TRANSLATION protein_coding - - - 148.0 1.0 3.125 0.0 124.3 6.0 -4,-6 0.0042 4 5.004 MINOR ENSMUSG00000048175 Asb8 ENSMUST00000123626 ENSMUSP00000121383 TRANSLATION protein_coding - CCDS27787.1 1 288.0 0.0 3.0 21.3 137.9 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000048175 Asb8 ENSMUST00000059112 ENSMUSP00000057864 TRANSLATION protein_coding - CCDS27787.1 1 288.0 0.0 3.0 21.3 137.9 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000048175 Asb8 ENSMUST00000143400 ENSMUSP00000115813 TRANSLATION protein_coding - CCDS27787.1 1 288.0 0.0 3.0 21.3 137.9 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000048175 Asb8 ENSMUST00000123922 ENSMUSP00000119481 TRANSLATION protein_coding - CCDS27787.1 3 288.0 0.0 3.0 21.3 137.9 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000049653 Spatc1 ENSMUST00000074173 ENSMUSP00000073805 TRANSLATION protein_coding - CCDS27564.1 1 480.0 0.0 0.0 1.2 421.3 0.0 -4,-5 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000049653 Spatc1 ENSMUST00000230221 ENSMUSP00000155378 TRANSLATION nonsense_mediated_decay - - - 327.0 0.0 0.0 0.0 290.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000013611 Snx31 ENSMUST00000013755 ENSMUSP00000013755 TRANSLATION protein_coding - CCDS27430.1 1 438.0 0.0 6.726 7.9 45.5 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:4 ENSMUSG00000013611 Snx31 ENSMUST00000160936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013611 Snx31 ENSMUST00000161202 ENSMUSP00000124063 TRANSLATION protein_coding - CCDS84166.1 1 439.0 0.0 6.726 7.9 45.5 0.0 -4,-7 0.9924 - 8.0 ALTERNATIVE:1 ENSMUSG00000013611 Snx31 ENSMUST00000162888 - NO_TRANSLATION retained_intron ENSMUSG00000022325 Pop1 ENSMUST00000126223 - NO_TRANSLATION retained_intron ENSMUSG00000022325 Pop1 ENSMUST00000155073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022325 Pop1 ENSMUST00000052290 ENSMUSP00000052654 TRANSLATION protein_coding - CCDS27420.1 1 1045.0 0.0 8.9 0.1 96.0 0.0 -4,-7 0.289 21 10.002 MINOR ENSMUSG00000022325 Pop1 ENSMUST00000153061 - NO_TRANSLATION retained_intron ENSMUSG00000022325 Pop1 ENSMUST00000132427 - NO_TRANSLATION retained_intron ENSMUSG00000022325 Pop1 ENSMUST00000079028 ENSMUSP00000078037 TRANSLATION protein_coding - CCDS27419.1 1 1015.0 0.0 9.9 2.8 96.0 0.0 -4,-7 1.0 21 13.0 PRINCIPAL:1 ENSMUSG00000038725 Pkhd1l1 ENSMUST00000038336 ENSMUSP00000036988 TRANSLATION protein_coding stop - 1 4247.0 0.0 1.608 4.8 943.9 0.0 3,-2 0.8761 28 -2.0 MINOR ENSMUSG00000038725 Pkhd1l1 ENSMUST00000232355 - NO_TRANSLATION retained_intron ENSMUSG00000038725 Pkhd1l1 ENSMUST00000231867 - NO_TRANSLATION retained_intron ENSMUSG00000038725 Pkhd1l1 ENSMUST00000166957 ENSMUSP00000129522 TRANSLATION protein_coding stop - 5 4249.0 0.0 1.608 4.8 943.9 0.0 3,-2 0.8781 28 -2.0 MINOR ENSMUSG00000038725 Pkhd1l1 ENSMUST00000209939 - NO_TRANSLATION retained_intron ENSMUSG00000038725 Pkhd1l1 ENSMUST00000209244 ENSMUSP00000147447 TRANSLATION protein_coding - CCDS84169.1 5 4249.0 0.0 1.608 5.1 943.9 0.0 3,-2 1.0 28 14.0 PRINCIPAL:1 ENSMUSG00000022339 Ebag9 ENSMUST00000227691 ENSMUSP00000154361 TRANSLATION protein_coding - CCDS27457.1 - 213.0 0.0 0.0 36.9 0.0 0.0 -2,-1 1.0 5 4.0 PRINCIPAL:1 ENSMUSG00000022339 Ebag9 ENSMUST00000228648 ENSMUSP00000153877 TRANSLATION protein_coding stop - - 103.0 0.0 0.0 0.0 0.0 0.0 -2,-1 0.0251 3 -2.0 MINOR ENSMUSG00000022339 Ebag9 ENSMUST00000022964 ENSMUSP00000022964 TRANSLATION protein_coding - CCDS27457.1 1 213.0 0.0 0.0 36.9 0.0 0.0 -2,-1 1.0 5 4.0 PRINCIPAL:1 ENSMUSG00000022339 Ebag9 ENSMUST00000226165 ENSMUSP00000153791 TRANSLATION protein_coding - CCDS27457.1 - 213.0 0.0 0.0 36.9 0.0 0.0 -2,-1 1.0 5 4.0 PRINCIPAL:1 ENSMUSG00000022197 Pdzd2 ENSMUST00000191339 - NO_TRANSLATION retained_intron ENSMUSG00000022197 Pdzd2 ENSMUST00000186113 ENSMUSP00000139994 TRANSLATION protein_coding stop - 3 49.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0019 - -2.0 MINOR ENSMUSG00000022197 Pdzd2 ENSMUST00000185619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022197 Pdzd2 ENSMUST00000075317 ENSMUSP00000074788 TRANSLATION protein_coding - CCDS37045.1 5 2796.0 0.0 7.052 0.0 222.6 0.0 -4,-6 1.0 39 12.0 PRINCIPAL:1 ENSMUSG00000022197 Pdzd2 ENSMUST00000190929 ENSMUSP00000140682 TRANSLATION protein_coding stop - 1 363.0 0.0 1.84 0.0 55.9 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000022197 Pdzd2 ENSMUST00000189746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022197 Pdzd2 ENSMUST00000189324 ENSMUSP00000140939 TRANSLATION protein_coding stop - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0164 - -2.0 MINOR ENSMUSG00000022197 Pdzd2 ENSMUST00000187398 - NO_TRANSLATION retained_intron ENSMUSG00000022197 Pdzd2 ENSMUST00000189469 - NO_TRANSLATION retained_intron ENSMUSG00000023026 Dip2b ENSMUST00000230733 - NO_TRANSLATION retained_intron ENSMUSG00000023026 Dip2b ENSMUST00000023768 ENSMUSP00000023768 TRANSLATION protein_coding - CCDS27831.1 5 1340.0 0.0 10.047 0.0 311.1 0.0 -4,-5 0.1985 31 6.0 MINOR ENSMUSG00000023026 Dip2b ENSMUST00000135658 - NO_TRANSLATION retained_intron ENSMUSG00000023026 Dip2b ENSMUST00000230619 - NO_TRANSLATION retained_intron ENSMUSG00000023026 Dip2b ENSMUST00000100203 ENSMUSP00000097777 TRANSLATION protein_coding - CCDS49731.1 1 1574.0 0.0 10.047 8.5 440.1 0.0 -3,-4 1.0 40 15.0 PRINCIPAL:1 ENSMUSG00000037465 Klf10 ENSMUST00000227920 ENSMUSP00000154265 TRANSLATION protein_coding - - - 434.0 8.0 1.332 0.0 35.6 0.0 -4,-5 0.0046 2 11.022 MINOR ENSMUSG00000037465 Klf10 ENSMUST00000228772 ENSMUSP00000154055 TRANSLATION protein_coding start/stop - - 176.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000037465 Klf10 ENSMUST00000228732 ENSMUSP00000153975 TRANSLATION protein_coding stop - - 151.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037465 Klf10 ENSMUST00000228416 ENSMUSP00000154669 TRANSLATION protein_coding stop - - 71.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000037465 Klf10 ENSMUST00000074043 ENSMUSP00000073690 TRANSLATION protein_coding - CCDS27438.1 1 479.0 12.0 2.0 8.8 57.9 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000037465 Klf10 ENSMUST00000226363 ENSMUSP00000154702 TRANSLATION protein_coding - - - 464.0 12.0 2.0 3.2 57.9 0.0 -4,-5 0.3012 2 18.846 MINOR ENSMUSG00000095241 Gm5478 ENSMUST00000230401 - NO_TRANSLATION retained_intron ENSMUSG00000095241 Gm5478 ENSMUST00000229963 ENSMUSP00000155269 TRANSLATION protein_coding - - - 535.0 0.0 4.55 0.0 441.7 0.0 -4,-7 0.7787 1 12.0 PRINCIPAL:1 ENSMUSG00000095241 Gm5478 ENSMUST00000100184 ENSMUSP00000097759 TRANSLATION protein_coding start/stop - 5 159.0 0.0 2.0 0.0 112.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022635 Zcrb1 ENSMUST00000161409 ENSMUSP00000125442 TRANSLATION nonsense_mediated_decay - - 1 66.0 0.0 1.08 0.0 30.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022635 Zcrb1 ENSMUST00000076070 ENSMUSP00000075441 TRANSLATION protein_coding - CCDS27766.1 1 217.0 4.0 3.16 26.7 96.9 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:4 ENSMUSG00000022635 Zcrb1 ENSMUST00000161955 - NO_TRANSLATION retained_intron ENSMUSG00000022635 Zcrb1 ENSMUST00000160407 - NO_TRANSLATION retained_intron ENSMUSG00000022635 Zcrb1 ENSMUST00000162160 ENSMUSP00000124549 TRANSLATION protein_coding - CCDS84190.1 1 216.0 4.0 3.16 26.7 96.9 0.0 -4,-7 0.9872 3 16.0 ALTERNATIVE:1 ENSMUSG00000022635 Zcrb1 ENSMUST00000159105 - NO_TRANSLATION retained_intron ENSMUSG00000022635 Zcrb1 ENSMUST00000159719 - NO_TRANSLATION retained_intron ENSMUSG00000022635 Zcrb1 ENSMUST00000159723 - NO_TRANSLATION retained_intron ENSMUSG00000068252 Apol7b ENSMUST00000149824 - NO_TRANSLATION retained_intron ENSMUSG00000068252 Apol7b ENSMUST00000089469 ENSMUSP00000086894 TRANSLATION protein_coding - CCDS27600.1 1 369.0 0.0 1.9 0.4 401.1 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000068252 Apol7b ENSMUST00000229434 ENSMUSP00000154906 TRANSLATION protein_coding stop - - 188.0 0.0 1.9 0.0 206.1 0.0 -4,-6 0.0216 - -2.0 MINOR ENSMUSG00000023017 Asic1 ENSMUST00000228012 - NO_TRANSLATION retained_intron ENSMUSG00000023017 Asic1 ENSMUST00000226291 - NO_TRANSLATION retained_intron ENSMUSG00000023017 Asic1 ENSMUST00000227670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023017 Asic1 ENSMUST00000228610 - NO_TRANSLATION retained_intron ENSMUSG00000023017 Asic1 ENSMUST00000228185 ENSMUSP00000154379 TRANSLATION protein_coding - - - 559.0 0.0 7.35 4.7 329.7 0.0 -4,-6 0.1289 3 7.66 MINOR ENSMUSG00000023017 Asic1 ENSMUST00000023758 ENSMUSP00000023758 TRANSLATION protein_coding - CCDS27826.1 1 526.0 0.0 8.85 33.1 359.7 1.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000033819 Ppp1r16a ENSMUST00000140730 - NO_TRANSLATION retained_intron ENSMUSG00000033819 Ppp1r16a ENSMUST00000143274 - NO_TRANSLATION retained_intron ENSMUSG00000033819 Ppp1r16a ENSMUST00000135388 ENSMUSP00000155515 TRANSLATION protein_coding - CCDS27585.1 1 524.0 0.0 6.145 7.2 100.7 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000033819 Ppp1r16a ENSMUST00000037551 ENSMUSP00000037356 TRANSLATION protein_coding - CCDS27585.1 1 524.0 0.0 6.145 7.2 100.7 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000033819 Ppp1r16a ENSMUST00000138951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033819 Ppp1r16a ENSMUST00000156920 ENSMUSP00000124336 TRANSLATION nonsense_mediated_decay start - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000033819 Ppp1r16a ENSMUST00000134449 - NO_TRANSLATION retained_intron ENSMUSG00000033819 Ppp1r16a ENSMUST00000150399 ENSMUSP00000123458 TRANSLATION nonsense_mediated_decay - - 1 242.0 0.0 3.829 0.0 52.6 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000033819 Ppp1r16a ENSMUST00000127674 - NO_TRANSLATION retained_intron ENSMUSG00000033819 Ppp1r16a ENSMUST00000129396 - NO_TRANSLATION retained_intron ENSMUSG00000064232 Gm5414 ENSMUST00000062879 ENSMUSP00000059101 TRANSLATION protein_coding - CCDS27857.1 2 552.0 0.0 4.35 0.4 414.5 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037204 Atg101 ENSMUST00000230525 ENSMUSP00000154855 TRANSLATION protein_coding stop - - 113.0 0.0 1.75 0.0 82.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037204 Atg101 ENSMUST00000229525 ENSMUSP00000154849 TRANSLATION protein_coding stop - - 84.0 0.0 1.0 0.0 60.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037204 Atg101 ENSMUST00000048393 ENSMUSP00000045474 TRANSLATION protein_coding - CCDS27849.1 1 218.0 0.0 2.75 30.4 141.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000101113 1700025B11Rik ENSMUST00000190233 ENSMUSP00000139560 TRANSLATION protein_coding - - 1 93.0 0.0 0.0 0.0 30.3 0.0 -4,-6 0.6889 - 6.0 PRINCIPAL:1 ENSMUSG00000063354 Slc39a4 ENSMUST00000073428 ENSMUSP00000073134 TRANSLATION protein_coding - - 1 607.0 0.0 4.76 0.0 144.9 5.0 2,-2 0.0753 6 7.938 MINOR ENSMUSG00000063354 Slc39a4 ENSMUST00000230977 ENSMUSP00000155442 TRANSLATION protein_coding - CCDS27578.1 - 660.0 0.0 4.76 0.4 212.6 6.0 2,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000063354 Slc39a4 ENSMUST00000230317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063354 Slc39a4 ENSMUST00000229613 - NO_TRANSLATION retained_intron ENSMUSG00000005981 Trap1 ENSMUST00000138594 - NO_TRANSLATION retained_intron ENSMUSG00000005981 Trap1 ENSMUST00000006137 ENSMUSP00000006137 TRANSLATION protein_coding - CCDS27914.1 1 706.0 8.0 16.06 10.3 363.0 0.0 -4,0 1.0 28 21.0 PRINCIPAL:1 ENSMUSG00000005981 Trap1 ENSMUST00000150354 ENSMUSP00000138307 TRANSLATION nonsense_mediated_decay start - 5 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005981 Trap1 ENSMUST00000137945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055692 Tmem191 ENSMUST00000231517 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000231347 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000231638 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000232636 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000232364 ENSMUSP00000156052 TRANSLATION protein_coding start/stop - - 123.0 2.0 0.0 0.0 87.4 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000055692 Tmem191 ENSMUST00000231322 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000231646 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000231334 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000232520 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000232071 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000232167 ENSMUSP00000156287 TRANSLATION protein_coding start - - 129.0 0.0 2.0 0.0 92.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000055692 Tmem191 ENSMUST00000232220 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000232031 - NO_TRANSLATION retained_intron ENSMUSG00000055692 Tmem191 ENSMUST00000164950 ENSMUSP00000131127 TRANSLATION protein_coding - CCDS49776.1 3 302.0 0.0 4.5 9.0 217.2 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000055692 Tmem191 ENSMUST00000232092 - NO_TRANSLATION retained_intron ENSMUSG00000022685 Parn ENSMUST00000229251 - NO_TRANSLATION retained_intron ENSMUSG00000022685 Parn ENSMUST00000058884 ENSMUSP00000055969 TRANSLATION protein_coding - CCDS37259.1 1 624.0 12.0 14.13 0.4 434.9 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000022685 Parn ENSMUST00000229042 ENSMUSP00000155076 TRANSLATION nonsense_mediated_decay - - - 82.0 2.0 2.28 0.0 71.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022685 Parn ENSMUST00000229526 - NO_TRANSLATION retained_intron ENSMUSG00000022685 Parn ENSMUST00000231003 ENSMUSP00000155335 TRANSLATION nonsense_mediated_decay - - - 209.0 2.0 5.13 0.0 157.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000063163 Speer2 ENSMUST00000166256 ENSMUSP00000130270 TRANSLATION protein_coding start/stop - 3 92.0 0.0 0.8 0.0 47.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000063163 Speer2 ENSMUST00000164146 - NO_TRANSLATION retained_intron ENSMUSG00000063163 Speer2 ENSMUST00000076500 ENSMUSP00000075821 TRANSLATION protein_coding - CCDS37375.1 2 264.0 0.0 1.64 0.0 91.0 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000118672 Muc4 ENSMUST00000239558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118672 Muc4 ENSMUST00000239556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118672 Muc4 ENSMUST00000239559 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118672 Muc4 ENSMUST00000239554 ENSMUSP00000159443 TRANSLATION protein_coding - - - 3990.0 0.0 1.9195 0.0 149.2 0.0 3,-4 1.0 28 12.0 PRINCIPAL:1 ENSMUSG00000118672 Muc4 ENSMUST00000239560 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118672 Muc4 ENSMUST00000239555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118672 Muc4 ENSMUST00000239557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022867 Usp25 ENSMUST00000232538 - NO_TRANSLATION retained_intron ENSMUSG00000022867 Usp25 ENSMUST00000232351 - NO_TRANSLATION retained_intron ENSMUSG00000022867 Usp25 ENSMUST00000232047 - NO_TRANSLATION retained_intron ENSMUSG00000022867 Usp25 ENSMUST00000023580 ENSMUSP00000023580 TRANSLATION protein_coding - CCDS28275.1 1 1055.0 0.0 20.15 10.8 199.0 0.0 -4,-5 1.0 22 10.598 PRINCIPAL:4 ENSMUSG00000022867 Usp25 ENSMUST00000239066 ENSMUSP00000159060 TRANSLATION protein_coding - - - 1125.0 0.0 20.35 10.8 199.0 0.0 -4,-5 0.8881 22 11.0 ALTERNATIVE:1 ENSMUSG00000022637 Cblb ENSMUST00000227879 ENSMUSP00000153787 TRANSLATION protein_coding - - - 982.0 5.0 9.45 10.2 511.5 0.0 -4,-5 0.9048 17 16.0 PRINCIPAL:3 ENSMUSG00000022637 Cblb ENSMUST00000227756 ENSMUSP00000153753 TRANSLATION protein_coding - - - 830.0 5.0 7.35 2.1 328.0 0.0 -4,-5 0.0605 15 8.56 MINOR ENSMUSG00000022637 Cblb ENSMUST00000227062 ENSMUSP00000154583 TRANSLATION protein_coding - CCDS37355.1 - 938.0 5.0 9.45 9.5 511.5 0.0 -4,-5 1.0 16 15.772 ALTERNATIVE:1 ENSMUSG00000022637 Cblb ENSMUST00000226253 - NO_TRANSLATION retained_intron ENSMUSG00000022637 Cblb ENSMUST00000114471 ENSMUSP00000110115 TRANSLATION protein_coding - CCDS37355.1 1 938.0 5.0 9.45 9.5 511.5 0.0 -4,-5 1.0 16 15.772 ALTERNATIVE:1 ENSMUSG00000022637 Cblb ENSMUST00000226593 ENSMUSP00000154755 TRANSLATION protein_coding - - - 982.0 5.0 9.45 10.2 511.5 0.0 -4,-5 0.9048 17 16.0 PRINCIPAL:3 ENSMUSG00000022637 Cblb ENSMUST00000228247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022885 St6gal1 ENSMUST00000023601 ENSMUSP00000023601 TRANSLATION protein_coding - CCDS28077.1 1 403.0 15.0 5.0 9.6 123.1 0.0 -1,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000022885 St6gal1 ENSMUST00000152449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022885 St6gal1 ENSMUST00000115335 ENSMUSP00000110992 TRANSLATION protein_coding - CCDS28077.1 1 403.0 15.0 5.0 9.6 123.1 0.0 -1,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000022885 St6gal1 ENSMUST00000178797 ENSMUSP00000136206 TRANSLATION protein_coding - CCDS28077.1 5 403.0 15.0 5.0 9.6 123.1 0.0 -1,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000022885 St6gal1 ENSMUST00000128050 ENSMUSP00000121865 TRANSLATION protein_coding stop - 3 33.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000022905 Kpna1 ENSMUST00000174500 ENSMUSP00000133819 TRANSLATION nonsense_mediated_decay - - 5 145.0 0.0 3.13 0.0 94.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022905 Kpna1 ENSMUST00000004054 ENSMUSP00000004054 TRANSLATION protein_coding - CCDS28144.1 1 538.0 0.0 11.96 27.7 456.6 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000022905 Kpna1 ENSMUST00000174737 ENSMUSP00000133852 TRANSLATION nonsense_mediated_decay start - 5 98.0 0.0 1.75 0.0 75.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022905 Kpna1 ENSMUST00000173696 ENSMUSP00000134534 TRANSLATION nonsense_mediated_decay - - 5 182.0 0.0 4.13 0.0 94.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022905 Kpna1 ENSMUST00000172991 - NO_TRANSLATION retained_intron ENSMUSG00000022905 Kpna1 ENSMUST00000173469 - NO_TRANSLATION retained_intron ENSMUSG00000022905 Kpna1 ENSMUST00000173715 - NO_TRANSLATION retained_intron ENSMUSG00000022905 Kpna1 ENSMUST00000172534 ENSMUSP00000134037 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000022905 Kpna1 ENSMUST00000173555 ENSMUSP00000133318 TRANSLATION protein_coding stop - 5 119.0 0.0 2.38 0.0 94.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022905 Kpna1 ENSMUST00000173641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071561 Cstdc5 ENSMUST00000146691 - NO_TRANSLATION retained_intron ENSMUSG00000071561 Cstdc5 ENSMUST00000096089 ENSMUSP00000093794 TRANSLATION protein_coding - CCDS37333.1 1 97.0 0.0 2.75 15.0 81.1 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000071561 Cstdc5 ENSMUST00000138796 ENSMUSP00000117436 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 1.948 0.0 60.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022650 Retnlb ENSMUST00000023328 ENSMUSP00000023328 TRANSLATION protein_coding - CCDS28210.1 1 105.0 0.0 2.55 7.2 112.4 0.0 4,-1 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000072419 Dppa2 ENSMUST00000097175 ENSMUSP00000110183 TRANSLATION protein_coding - CCDS37350.1 1 301.0 0.0 1.0 0.0 230.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072419 Dppa2 ENSMUST00000232448 ENSMUSP00000156143 TRANSLATION protein_coding - CCDS37350.1 - 301.0 0.0 1.0 0.0 230.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022868 Ahsg ENSMUST00000023583 ENSMUSP00000023583 TRANSLATION protein_coding - CCDS28071.1 1 345.0 0.0 2.118 0.1 68.8 0.0 4,-1 0.48 8 7.826 ALTERNATIVE:2 ENSMUSG00000022868 Ahsg ENSMUST00000232098 ENSMUSP00000156219 TRANSLATION protein_coding - - - 266.0 0.0 1.918 0.0 68.8 0.0 -4,-5 0.0167 8 7.274 ALTERNATIVE:2 ENSMUSG00000022868 Ahsg ENSMUST00000231848 ENSMUSP00000156233 TRANSLATION protein_coding - - - 294.0 0.0 1.918 0.0 68.8 0.0 -3,-6 0.1016 8 7.274 ALTERNATIVE:2 ENSMUSG00000022868 Ahsg ENSMUST00000232674 ENSMUSP00000155875 TRANSLATION protein_coding start - - 115.0 0.0 1.018 0.0 58.7 0.0 -4,-6 0.0034 2 -2.0 MINOR ENSMUSG00000022868 Ahsg ENSMUST00000231932 ENSMUSP00000156181 TRANSLATION nonsense_mediated_decay - - - 123.0 0.0 0.65 0.0 0.0 0.0 4,-1 0.0014 - -2.0 MINOR ENSMUSG00000022868 Ahsg ENSMUST00000231328 ENSMUSP00000156266 TRANSLATION protein_coding - - - 301.0 0.0 2.182 0.0 68.8 0.0 -4,-2 0.7684 8 8.0 PRINCIPAL:2 ENSMUSG00000022868 Ahsg ENSMUST00000232556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022868 Ahsg ENSMUST00000232377 - NO_TRANSLATION retained_intron ENSMUSG00000022652 Morc1 ENSMUST00000232256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022652 Morc1 ENSMUST00000232195 - NO_TRANSLATION retained_intron ENSMUSG00000022652 Morc1 ENSMUST00000023330 ENSMUSP00000023330 TRANSLATION protein_coding - CCDS37351.1 1 950.0 9.0 11.32375 0.0 116.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000057855 Krtap6-3 ENSMUST00000079151 ENSMUSP00000078152 TRANSLATION protein_coding start - - 54.0 0.0 0.0 0.0 32.8 0.0 -4,-5 0.0551 - -2.0 MINOR ENSMUSG00000057855 Krtap6-3 ENSMUST00000185581 ENSMUSP00000140246 TRANSLATION protein_coding - - - 57.0 0.0 0.0 0.0 40.5 0.0 -4,-5 0.6987 - 6.0 PRINCIPAL:1 ENSMUSG00000094733 Csta3 ENSMUST00000089628 ENSMUSP00000087054 TRANSLATION protein_coding - CCDS37329.1 1 97.0 0.0 2.75 12.8 76.7 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062105 Or5h17 ENSMUST00000214831 ENSMUSP00000149404 TRANSLATION protein_coding - CCDS28241.1 5 309.0 0.0 1.0 10.4 160.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062105 Or5h17 ENSMUST00000073320 ENSMUSP00000080602 TRANSLATION protein_coding - CCDS28241.1 2 309.0 0.0 1.0 10.4 160.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062105 Or5h17 ENSMUST00000214916 ENSMUSP00000149279 TRANSLATION protein_coding - CCDS28241.1 5 309.0 0.0 1.0 10.4 160.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062105 Or5h17 ENSMUST00000213465 ENSMUSP00000150952 TRANSLATION protein_coding - CCDS28241.1 5 309.0 0.0 1.0 10.4 160.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062105 Or5h17 ENSMUST00000206303 ENSMUSP00000145583 TRANSLATION protein_coding - CCDS28241.1 3 309.0 0.0 1.0 10.4 160.2 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040681 Hmgn1 ENSMUST00000233638 - NO_TRANSLATION retained_intron ENSMUSG00000040681 Hmgn1 ENSMUST00000050884 ENSMUSP00000061012 TRANSLATION protein_coding - CCDS28353.1 1 96.0 0.0 0.0 17.3 94.9 0.0 -4,-7 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000040681 Hmgn1 ENSMUST00000233292 ENSMUSP00000156496 TRANSLATION protein_coding - - - 86.0 0.0 0.0 0.0 48.3 0.0 -4,-5 0.0257 1 3.054 MINOR ENSMUSG00000040681 Hmgn1 ENSMUST00000233297 - NO_TRANSLATION retained_intron ENSMUSG00000064061 Dzip3 ENSMUST00000133377 - NO_TRANSLATION retained_intron ENSMUSG00000064061 Dzip3 ENSMUST00000151950 ENSMUSP00000117675 TRANSLATION protein_coding start - 2 167.0 5.0 0.8 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000064061 Dzip3 ENSMUST00000139350 - NO_TRANSLATION retained_intron ENSMUSG00000064061 Dzip3 ENSMUST00000147358 - NO_TRANSLATION retained_intron ENSMUSG00000064061 Dzip3 ENSMUST00000123961 - NO_TRANSLATION retained_intron ENSMUSG00000064061 Dzip3 ENSMUST00000121869 ENSMUSP00000113344 TRANSLATION protein_coding - CCDS49866.1 5 1204.0 8.0 1.4 4.1 39.1 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:2 ENSMUSG00000064061 Dzip3 ENSMUST00000114516 ENSMUSP00000110161 TRANSLATION protein_coding - CCDS37353.1 1 998.0 8.0 1.4 3.4 39.1 0.0 -4,-5 0.7494 17 15.548 ALTERNATIVE:2 ENSMUSG00000014039 Prdm15 ENSMUST00000095849 ENSMUSP00000093533 TRANSLATION protein_coding - CCDS49926.1 5 1174.0 60.0 11.169 0.0 167.9 0.0 -4,-5 0.6729 2 14.0 ALTERNATIVE:2 ENSMUSG00000014039 Prdm15 ENSMUST00000131951 - NO_TRANSLATION retained_intron ENSMUSG00000014039 Prdm15 ENSMUST00000136529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014039 Prdm15 ENSMUST00000126916 - NO_TRANSLATION retained_intron ENSMUSG00000014039 Prdm15 ENSMUST00000128917 - NO_TRANSLATION retained_intron ENSMUSG00000014039 Prdm15 ENSMUST00000135505 ENSMUSP00000115814 TRANSLATION protein_coding stop - 3 85.0 3.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000014039 Prdm15 ENSMUST00000142295 ENSMUSP00000120497 TRANSLATION nonsense_mediated_decay - - 1 474.0 12.0 4.53 0.0 40.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000014039 Prdm15 ENSMUST00000121584 ENSMUSP00000113791 TRANSLATION protein_coding - - 1 1148.0 60.0 11.169 0.4 167.9 0.0 -4,-5 0.9766 2 14.0 PRINCIPAL:2 ENSMUSG00000014039 Prdm15 ENSMUST00000119200 ENSMUSP00000113002 TRANSLATION protein_coding stop - 3 110.0 3.0 1.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014039 Prdm15 ENSMUST00000129331 - NO_TRANSLATION retained_intron ENSMUSG00000014039 Prdm15 ENSMUST00000231599 - NO_TRANSLATION retained_intron ENSMUSG00000002846 Timmdc1 ENSMUST00000147543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002846 Timmdc1 ENSMUST00000002925 ENSMUSP00000002925 TRANSLATION protein_coding - CCDS28169.1 1 285.0 0.0 0.0 4.7 56.0 0.0 -2,1 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000110573 Gm5485 ENSMUST00000212197 ENSMUSP00000148687 TRANSLATION protein_coding - - 1 91.0 0.0 0.0 3.4 0.0 0.0 1,-2 0.7144 - 1.0 PRINCIPAL:1 ENSMUSG00000023143 Nagpa ENSMUST00000147567 ENSMUSP00000117051 TRANSLATION protein_coding - - 1 374.0 0.0 5.8 0.0 118.8 1.0 -4,-5 0.0042 6 10.188 MINOR ENSMUSG00000023143 Nagpa ENSMUST00000156450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023143 Nagpa ENSMUST00000144490 - NO_TRANSLATION retained_intron ENSMUSG00000023143 Nagpa ENSMUST00000023911 ENSMUSP00000023911 TRANSLATION protein_coding - CCDS27933.1 1 517.0 0.0 6.3 3.8 132.3 1.0 3,-2 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000022836 Mylk ENSMUST00000155268 - NO_TRANSLATION retained_intron ENSMUSG00000022836 Mylk ENSMUST00000232482 - NO_TRANSLATION retained_intron ENSMUSG00000022836 Mylk ENSMUST00000231589 ENSMUSP00000156149 TRANSLATION protein_coding - - - 159.0 0.0 2.4 0.0 100.8 0.0 -4,-7 0.0 7 0.0 MINOR ENSMUSG00000022836 Mylk ENSMUST00000023538 ENSMUSP00000023538 TRANSLATION protein_coding - CCDS37320.1 1 1950.0 21.0 14.191 0.0 1159.4 0.0 -4,-7 1.0 57 18.0 PRINCIPAL:1 ENSMUSG00000022836 Mylk ENSMUST00000231998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022836 Mylk ENSMUST00000232066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022836 Mylk ENSMUST00000232541 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022836 Mylk ENSMUST00000232477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059003 Grin2a ENSMUST00000197242 - NO_TRANSLATION retained_intron ENSMUSG00000059003 Grin2a ENSMUST00000199267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059003 Grin2a ENSMUST00000156482 - NO_TRANSLATION retained_intron ENSMUSG00000059003 Grin2a ENSMUST00000115835 ENSMUSP00000111501 TRANSLATION protein_coding - CCDS27943.1 5 1464.0 14.0 10.2 5.7 1142.3 3.0 1,-2 1.0 26 20.0 PRINCIPAL:1 ENSMUSG00000059003 Grin2a ENSMUST00000199708 ENSMUSP00000142900 TRANSLATION protein_coding - CCDS27943.1 5 1464.0 14.0 10.2 5.7 1142.3 3.0 1,-2 1.0 26 20.0 PRINCIPAL:1 ENSMUSG00000059003 Grin2a ENSMUST00000032331 ENSMUSP00000032331 TRANSLATION protein_coding - CCDS27943.1 1 1464.0 14.0 10.2 5.7 1142.3 3.0 1,-2 1.0 26 20.0 PRINCIPAL:1 ENSMUSG00000044029 Or5k15 ENSMUST00000206523 ENSMUSP00000145885 TRANSLATION protein_coding - CCDS28238.1 3 319.0 0.0 1.0 4.6 165.7 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044029 Or5k15 ENSMUST00000058564 ENSMUSP00000049578 TRANSLATION protein_coding - CCDS28238.1 - 319.0 0.0 1.0 4.6 165.7 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044029 Or5k15 ENSMUST00000215032 ENSMUSP00000148922 TRANSLATION protein_coding - CCDS28238.1 5 319.0 0.0 1.0 4.6 165.7 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000014075 Dynlt2b ENSMUST00000131204 - NO_TRANSLATION retained_intron ENSMUSG00000014075 Dynlt2b ENSMUST00000080316 ENSMUSP00000079194 TRANSLATION protein_coding - CCDS84222.1 1 104.0 0.0 1.0 0.1 0.0 0.0 -4,-5 0.018 2 1.998 MINOR ENSMUSG00000014075 Dynlt2b ENSMUST00000014220 ENSMUSP00000014220 TRANSLATION protein_coding - CCDS37312.1 1 144.0 0.0 3.0 2.5 91.6 0.0 -4,-6 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000050908 Tvp23a ENSMUST00000141587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050908 Tvp23a ENSMUST00000051118 ENSMUSP00000052922 TRANSLATION protein_coding - CCDS27949.1 1 222.0 0.0 3.6 0.1 173.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050908 Tvp23a ENSMUST00000128288 ENSMUSP00000116076 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050908 Tvp23a ENSMUST00000153027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050908 Tvp23a ENSMUST00000135315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032932 Hspa13 ENSMUST00000114244 ENSMUSP00000109882 TRANSLATION protein_coding - - 5 260.0 11.0 3.198 0.0 218.7 0.0 1,-3 0.0333 3 5.868 MINOR ENSMUSG00000032932 Hspa13 ENSMUST00000232633 ENSMUSP00000156320 TRANSLATION nonsense_mediated_decay - - - 260.0 11.0 3.198 0.0 218.7 0.0 1,-3 0.0333 3 -2.0 MINOR ENSMUSG00000032932 Hspa13 ENSMUST00000137806 - NO_TRANSLATION retained_intron ENSMUSG00000032932 Hspa13 ENSMUST00000046283 ENSMUSP00000048817 TRANSLATION protein_coding - CCDS28273.1 1 471.0 21.0 3.264 9.2 362.6 0.0 1,-3 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000041720 Pi4ka ENSMUST00000231914 - NO_TRANSLATION retained_intron ENSMUSG00000041720 Pi4ka ENSMUST00000231683 ENSMUSP00000156091 TRANSLATION nonsense_mediated_decay start - - 153.0 0.0 3.33 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000041720 Pi4ka ENSMUST00000036161 ENSMUSP00000036162 TRANSLATION protein_coding - CCDS37271.1 1 2044.0 0.0 22.0225 12.5 219.5 0.0 -4,-6 1.0 69 15.0 PRINCIPAL:1 ENSMUSG00000041720 Pi4ka ENSMUST00000231651 ENSMUSP00000155976 TRANSLATION nonsense_mediated_decay start - - 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000041720 Pi4ka ENSMUST00000231917 - NO_TRANSLATION retained_intron ENSMUSG00000041720 Pi4ka ENSMUST00000232631 - NO_TRANSLATION retained_intron ENSMUSG00000041720 Pi4ka ENSMUST00000231419 - NO_TRANSLATION retained_intron ENSMUSG00000041720 Pi4ka ENSMUST00000231961 - NO_TRANSLATION retained_intron ENSMUSG00000041720 Pi4ka ENSMUST00000232404 ENSMUSP00000156338 TRANSLATION protein_coding start/stop - - 319.0 0.0 4.0 0.0 0.0 0.0 -4,-6 0.0007 11 -2.0 MINOR ENSMUSG00000041720 Pi4ka ENSMUST00000232232 ENSMUSP00000156049 TRANSLATION protein_coding - - - 2105.0 0.0 22.0225 0.1 219.5 0.0 -4,-6 0.2634 70 12.0 MINOR ENSMUSG00000041720 Pi4ka ENSMUST00000231529 - NO_TRANSLATION retained_intron ENSMUSG00000022812 Gsk3b ENSMUST00000231437 ENSMUSP00000156065 TRANSLATION protein_coding start - - 182.0 0.0 0.62 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022812 Gsk3b ENSMUST00000134870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022812 Gsk3b ENSMUST00000114750 ENSMUSP00000110398 TRANSLATION protein_coding - CCDS84232.1 5 433.0 18.0 9.15 21.7 229.9 0.0 -4,-2 0.9549 14 15.492 ALTERNATIVE:1 ENSMUSG00000022812 Gsk3b ENSMUST00000023507 ENSMUSP00000023507 TRANSLATION protein_coding - CCDS28163.1 1 420.0 18.0 9.15 24.7 231.0 0.0 -4,-2 1.0 14 16.0 PRINCIPAL:4 ENSMUSG00000022812 Gsk3b ENSMUST00000132057 - NO_TRANSLATION retained_intron ENSMUSG00000038127 Ccdc50 ENSMUST00000100026 ENSMUSP00000097604 TRANSLATION protein_coding - CCDS37305.1 1 305.0 0.0 0.0 9.6 158.5 0.0 -4,-5 1.0 5 5.0 PRINCIPAL:2 ENSMUSG00000038127 Ccdc50 ENSMUST00000239351 ENSMUSP00000159204 TRANSLATION protein_coding - - - 480.0 0.0 0.0 8.1 158.5 0.0 -4,-5 0.7396 4 4.478 ALTERNATIVE:1 ENSMUSG00000038127 Ccdc50 ENSMUST00000039443 ENSMUSP00000038509 TRANSLATION protein_coding - - 1 264.0 0.0 0.0 0.0 158.5 0.0 -4,-5 0.0312 5 2.0 MINOR ENSMUSG00000038127 Ccdc50 ENSMUST00000143823 ENSMUSP00000118633 TRANSLATION protein_coding start/stop - 5 256.0 0.0 0.0 0.0 136.2 0.0 -4,-7 0.0036 5 -2.0 MINOR ENSMUSG00000038127 Ccdc50 ENSMUST00000149077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038127 Ccdc50 ENSMUST00000096127 ENSMUSP00000093841 TRANSLATION protein_coding - CCDS37306.1 1 290.0 0.0 0.0 0.0 158.5 0.0 -4,-5 0.1415 3 2.0 MINOR ENSMUSG00000062901 Klhl24 ENSMUST00000231842 ENSMUSP00000155987 TRANSLATION protein_coding stop - - 136.0 0.0 1.0 0.0 79.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000062901 Klhl24 ENSMUST00000232088 ENSMUSP00000155913 TRANSLATION protein_coding stop - - 223.0 0.0 2.0 0.0 155.4 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000062901 Klhl24 ENSMUST00000023509 ENSMUSP00000023509 TRANSLATION protein_coding - CCDS28042.1 1 600.0 0.0 8.0 31.7 358.2 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000062901 Klhl24 ENSMUST00000232494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062901 Klhl24 ENSMUST00000231740 - NO_TRANSLATION retained_intron ENSMUSG00000048101 Or7a40 ENSMUST00000057886 ENSMUSP00000053393 TRANSLATION protein_coding - CCDS27987.1 - 309.0 0.0 1.0 9.9 166.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048101 Or7a40 ENSMUST00000206365 ENSMUSP00000145655 TRANSLATION protein_coding - CCDS27987.1 3 309.0 0.0 1.0 9.9 166.9 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022682 Rrn3 ENSMUST00000023363 ENSMUSP00000023363 TRANSLATION protein_coding - CCDS27968.1 1 656.0 0.0 5.201 8.3 451.3 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000022682 Rrn3 ENSMUST00000230102 - NO_TRANSLATION retained_intron ENSMUSG00000106668 Iglj1 ENSMUST00000199490 ENSMUSP00000142644 TRANSLATION IG_J_gene start/stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.5813 - -2.0 PRINCIPAL:1 ENSMUSG00000008393 Carhsp1 ENSMUST00000008537 ENSMUSP00000008537 TRANSLATION protein_coding - CCDS27942.1 1 148.0 0.0 2.4 14.3 46.3 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000022498 Txndc11 ENSMUST00000038424 ENSMUSP00000041113 TRANSLATION protein_coding - CCDS27960.1 1 948.0 3.0 3.713 1.1 76.4 3.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000022498 Txndc11 ENSMUST00000146081 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022498 Txndc11 ENSMUST00000145225 ENSMUSP00000116563 TRANSLATION nonsense_mediated_decay - - 1 271.0 0.0 1.898 0.0 38.6 3.0 -4,-5 0.0014 6 -2.0 MINOR ENSMUSG00000022498 Txndc11 ENSMUST00000155221 ENSMUSP00000114777 TRANSLATION nonsense_mediated_decay - - 3 86.0 0.0 0.0 0.0 0.0 3.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000022498 Txndc11 ENSMUST00000131012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022498 Txndc11 ENSMUST00000147884 ENSMUSP00000117426 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 0.0 0.0 0.0 3.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000022498 Txndc11 ENSMUST00000118362 ENSMUSP00000113432 TRANSLATION protein_coding - - 1 639.0 0.0 2.263 0.0 38.6 3.0 -4,-5 0.0034 9 6.132 MINOR ENSMUSG00000022498 Txndc11 ENSMUST00000118679 ENSMUSP00000112601 TRANSLATION protein_coding - - 1 254.0 0.0 1.648 0.0 38.6 3.0 -4,-5 0.0014 6 4.902 MINOR ENSMUSG00000022498 Txndc11 ENSMUST00000148183 - NO_TRANSLATION retained_intron ENSMUSG00000087141 Plcxd2 ENSMUST00000130481 ENSMUSP00000114852 TRANSLATION protein_coding - CCDS49863.1 1 340.0 5.0 3.8 10.4 0.0 0.0 -4,-1 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000046613 Vwa5b2 ENSMUST00000232279 ENSMUSP00000155978 TRANSLATION protein_coding stop - - 89.0 0.0 0.45 0.0 110.4 0.0 -4,-7 0.0005 - -2.0 MINOR ENSMUSG00000046613 Vwa5b2 ENSMUST00000096197 ENSMUSP00000093911 TRANSLATION protein_coding - CCDS49792.1 5 1248.0 0.0 0.59 3.1 207.8 0.0 -4,-7 1.0 16 9.0 PRINCIPAL:4 ENSMUSG00000046613 Vwa5b2 ENSMUST00000231608 - NO_TRANSLATION retained_intron ENSMUSG00000046613 Vwa5b2 ENSMUST00000145483 - NO_TRANSLATION retained_intron ENSMUSG00000046613 Vwa5b2 ENSMUST00000159736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046613 Vwa5b2 ENSMUST00000100074 ENSMUSP00000097652 TRANSLATION protein_coding - CCDS37288.1 1 602.0 0.0 0.59 0.0 207.8 0.0 -4,-7 0.2771 8 8.0 ALTERNATIVE:2 ENSMUSG00000046613 Vwa5b2 ENSMUST00000046188 - NO_TRANSLATION retained_intron ENSMUSG00000046613 Vwa5b2 ENSMUST00000161715 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046613 Vwa5b2 ENSMUST00000159780 ENSMUSP00000123727 TRANSLATION protein_coding - - 5 1248.0 0.0 0.59 3.1 207.8 0.0 -4,-7 0.8424 16 9.0 ALTERNATIVE:2 ENSMUSG00000046613 Vwa5b2 ENSMUST00000149236 ENSMUSP00000124117 TRANSLATION nonsense_mediated_decay - - 2 413.0 0.0 -1.13 0.0 138.0 0.0 -4,-7 0.0014 6 -2.0 MINOR ENSMUSG00000046613 Vwa5b2 ENSMUST00000162919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046613 Vwa5b2 ENSMUST00000161257 ENSMUSP00000155938 TRANSLATION protein_coding stop - 2 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0074 - -2.0 MINOR ENSMUSG00000046613 Vwa5b2 ENSMUST00000232474 ENSMUSP00000155934 TRANSLATION protein_coding stop - - 57.0 0.0 0.45 0.0 56.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022821 Hgd ENSMUST00000161193 - NO_TRANSLATION retained_intron ENSMUSG00000022821 Hgd ENSMUST00000160847 ENSMUSP00000125492 TRANSLATION protein_coding - CCDS49849.1 1 445.0 3.0 11.83 11.3 740.4 0.0 -4,-5 1.0 18 18.0 PRINCIPAL:1 ENSMUSG00000022821 Hgd ENSMUST00000162918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022821 Hgd ENSMUST00000159938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022821 Hgd ENSMUST00000159787 ENSMUSP00000156254 TRANSLATION protein_coding - - 1 404.0 3.0 10.04 0.0 647.6 0.0 -4,-7 0.0178 14 5.85 MINOR ENSMUSG00000022680 Pdxdc1 ENSMUST00000154150 - NO_TRANSLATION retained_intron ENSMUSG00000022680 Pdxdc1 ENSMUST00000148551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022680 Pdxdc1 ENSMUST00000115803 ENSMUSP00000111469 TRANSLATION protein_coding stop - 5 378.0 0.0 6.28 0.0 35.5 0.0 -4,-5 0.0061 7 -2.0 MINOR ENSMUSG00000022680 Pdxdc1 ENSMUST00000115804 ENSMUSP00000111471 TRANSLATION protein_coding - CCDS37261.1 1 710.0 0.0 9.22 0.0 38.3 0.0 -4,-5 1.0 24 6.0 PRINCIPAL:2 ENSMUSG00000022680 Pdxdc1 ENSMUST00000144913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022680 Pdxdc1 ENSMUST00000137715 - NO_TRANSLATION retained_intron ENSMUSG00000022680 Pdxdc1 ENSMUST00000124860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022680 Pdxdc1 ENSMUST00000115802 ENSMUSP00000111468 TRANSLATION protein_coding - - 1 384.0 0.0 6.28 0.0 39.8 0.0 -4,-5 0.0149 7 0.12 MINOR ENSMUSG00000022680 Pdxdc1 ENSMUST00000148848 - NO_TRANSLATION retained_intron ENSMUSG00000022680 Pdxdc1 ENSMUST00000127432 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022680 Pdxdc1 ENSMUST00000151774 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022680 Pdxdc1 ENSMUST00000152450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022680 Pdxdc1 ENSMUST00000139859 - NO_TRANSLATION retained_intron ENSMUSG00000022680 Pdxdc1 ENSMUST00000023361 ENSMUSP00000023361 TRANSLATION protein_coding - CCDS70685.1 1 789.0 0.0 9.22 0.1 38.3 0.0 -4,-5 0.3329 25 6.0 ALTERNATIVE:2 ENSMUSG00000022680 Pdxdc1 ENSMUST00000150435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000116594 Gm49601 ENSMUST00000231335 ENSMUSP00000156088 TRANSLATION protein_coding,RT - - - 365.0 14.0 7.75 0.0 417.7 0.0 -4,-5 0.7754 - -2.0 PRINCIPAL:1 ENSMUSG00000058550 Dppa4 ENSMUST00000231359 - NO_TRANSLATION retained_intron ENSMUSG00000058550 Dppa4 ENSMUST00000050705 ENSMUSP00000093748 TRANSLATION protein_coding - CCDS28208.1 5 244.0 2.0 1.33 0.1 156.8 0.0 -4,-5 0.3007 - 10.0 ALTERNATIVE:2 ENSMUSG00000058550 Dppa4 ENSMUST00000096045 ENSMUSP00000093749 TRANSLATION protein_coding - CCDS28209.1 1 296.0 2.0 1.33 0.1 156.8 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:2 ENSMUSG00000005899 Smpd4 ENSMUST00000231949 - NO_TRANSLATION retained_intron ENSMUSG00000005899 Smpd4 ENSMUST00000232487 - NO_TRANSLATION retained_intron ENSMUSG00000005899 Smpd4 ENSMUST00000163476 ENSMUSP00000131867 TRANSLATION protein_coding - CCDS49781.1 1 794.0 0.0 0.0 9.1 1130.3 3.0 -4,-7 0.7575 17 2.73 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000232021 ENSMUSP00000156079 TRANSLATION protein_coding - - - 721.0 0.0 0.0 0.0 903.2 3.0 -4,-7 0.0607 17 0.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000231627 ENSMUSP00000156051 TRANSLATION nonsense_mediated_decay - - - 50.0 0.0 0.0 0.0 55.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000232116 ENSMUSP00000155998 TRANSLATION nonsense_mediated_decay - - - 92.0 0.0 0.0 0.0 165.5 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000232270 - NO_TRANSLATION retained_intron ENSMUSG00000005899 Smpd4 ENSMUST00000231378 - NO_TRANSLATION retained_intron ENSMUSG00000005899 Smpd4 ENSMUST00000231257 ENSMUSP00000156136 TRANSLATION protein_coding stop - - 125.0 0.0 0.0 0.0 227.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000232271 ENSMUSP00000156215 TRANSLATION protein_coding - - - 499.0 0.0 0.0 0.0 741.9 3.0 -4,-2 0.0345 12 0.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000231722 ENSMUSP00000156043 TRANSLATION nonsense_mediated_decay - - - 55.0 0.0 0.0 0.0 57.1 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000231887 ENSMUSP00000155917 TRANSLATION protein_coding stop - - 27.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000231736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005899 Smpd4 ENSMUST00000232578 - NO_TRANSLATION retained_intron ENSMUSG00000005899 Smpd4 ENSMUST00000231792 ENSMUSP00000156362 TRANSLATION protein_coding - - - 573.0 0.0 0.0 0.0 903.2 3.0 -4,-6 0.0531 14 0.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000006053 ENSMUSP00000006053 TRANSLATION protein_coding - CCDS28009.1 1 823.0 0.0 0.0 9.9 1489.2 3.0 -4,-7 1.0 17 9.0 PRINCIPAL:1 ENSMUSG00000005899 Smpd4 ENSMUST00000231311 ENSMUSP00000156127 TRANSLATION protein_coding stop - - 128.0 0.0 0.0 0.0 219.3 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000232185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005899 Smpd4 ENSMUST00000090159 ENSMUSP00000087620 TRANSLATION protein_coding - CCDS49780.1 1 807.0 0.0 0.0 0.0 1106.9 3.0 -4,-7 0.1762 16 0.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000232043 ENSMUSP00000156353 TRANSLATION protein_coding stop - - 82.0 0.0 0.0 0.0 148.4 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000232468 - NO_TRANSLATION retained_intron ENSMUSG00000005899 Smpd4 ENSMUST00000231436 ENSMUSP00000155897 TRANSLATION protein_coding - - - 751.0 0.0 0.0 0.0 962.1 3.0 -4,-7 0.0707 16 0.0 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000232417 - NO_TRANSLATION retained_intron ENSMUSG00000005899 Smpd4 ENSMUST00000165363 ENSMUSP00000130720 TRANSLATION protein_coding - CCDS49779.1 1 793.0 0.0 0.0 5.0 1118.0 3.0 -4,-7 0.5095 16 1.347 MINOR ENSMUSG00000005899 Smpd4 ENSMUST00000232442 ENSMUSP00000155910 TRANSLATION protein_coding stop - - 110.0 0.0 0.0 0.0 214.2 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000005251 Ripk4 ENSMUST00000019386 ENSMUSP00000019386 TRANSLATION protein_coding - CCDS28360.1 1 786.0 20.0 3.82 9.3 390.6 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000039639 Kcne1 ENSMUST00000166707 ENSMUSP00000130866 TRANSLATION protein_coding - CCDS28336.1 1 129.0 0.0 1.0 8.1 202.2 1.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000039639 Kcne1 ENSMUST00000051705 ENSMUSP00000052248 TRANSLATION protein_coding - CCDS28336.1 1 129.0 0.0 1.0 8.1 202.2 1.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000022664 Slc35a5 ENSMUST00000152364 - NO_TRANSLATION retained_intron ENSMUSG00000022664 Slc35a5 ENSMUST00000181437 - NO_TRANSLATION retained_intron ENSMUSG00000022664 Slc35a5 ENSMUST00000114600 ENSMUSP00000110247 TRANSLATION protein_coding - - 3 179.0 0.0 1.024 0.0 45.0 9.0 -3,-6 0.0058 - 2.178 MINOR ENSMUSG00000022664 Slc35a5 ENSMUST00000181750 ENSMUSP00000137937 TRANSLATION protein_coding stop - 3 66.0 0.0 0.36 0.0 0.0 2.0 -2,-5 0.0003 - -2.0 MINOR ENSMUSG00000022664 Slc35a5 ENSMUST00000180636 ENSMUSP00000137821 TRANSLATION protein_coding stop - 5 233.0 0.0 2.124 0.0 81.1 12.0 -4,-2 0.0042 - -2.0 MINOR ENSMUSG00000022664 Slc35a5 ENSMUST00000181177 ENSMUSP00000137789 TRANSLATION protein_coding - - 3 152.0 0.0 0.4 0.0 0.0 6.0 -4,-2 0.006 - 0.852 MINOR ENSMUSG00000022664 Slc35a5 ENSMUST00000181377 - NO_TRANSLATION retained_intron ENSMUSG00000022664 Slc35a5 ENSMUST00000023344 ENSMUSP00000023344 TRANSLATION protein_coding - CCDS28193.1 1 437.0 0.0 2.824 0.8 176.4 19.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022816 Fstl1 ENSMUST00000127495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022816 Fstl1 ENSMUST00000152579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022816 Fstl1 ENSMUST00000125279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022816 Fstl1 ENSMUST00000135668 - NO_TRANSLATION retained_intron ENSMUSG00000022816 Fstl1 ENSMUST00000123077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022816 Fstl1 ENSMUST00000114763 ENSMUSP00000110411 TRANSLATION protein_coding - CCDS37339.1 1 306.0 4.0 3.677 15.7 79.2 0.0 4,-1 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000022911 Arl13b ENSMUST00000141665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022911 Arl13b ENSMUST00000132902 - NO_TRANSLATION retained_intron ENSMUSG00000022911 Arl13b ENSMUST00000089289 ENSMUSP00000086703 TRANSLATION protein_coding - CCDS28261.1 5 427.0 16.0 5.4 11.8 140.8 0.0 -4,-2 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000022911 Arl13b ENSMUST00000232561 ENSMUSP00000156207 TRANSLATION protein_coding stop - - 126.0 7.0 2.75 0.0 38.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000050520 Cldn8 ENSMUST00000049697 ENSMUSP00000051887 TRANSLATION protein_coding - CCDS28296.1 - 225.0 0.0 0.6 15.4 104.7 0.0 1,-3 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000045625 Pigz ENSMUST00000134928 ENSMUSP00000156116 TRANSLATION protein_coding - - 1 74.0 0.0 0.0 0.0 25.9 0.0 0,-3 0.0 - 0.0 MINOR ENSMUSG00000045625 Pigz ENSMUST00000052174 ENSMUSP00000057509 TRANSLATION protein_coding - CCDS28109.1 1 560.0 0.0 0.0 2.2 191.8 0.0 0,-3 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000045625 Pigz ENSMUST00000134666 ENSMUSP00000155940 TRANSLATION protein_coding - - 5 58.0 0.0 0.0 0.0 26.7 0.0 0,-3 0.0 - 0.0 MINOR ENSMUSG00000045625 Pigz ENSMUST00000151412 ENSMUSP00000156038 TRANSLATION protein_coding - - 2 64.0 0.0 0.0 0.0 25.1 0.0 0,-3 0.0 - 0.0 MINOR ENSMUSG00000034362 Csta1 ENSMUST00000096090 ENSMUSP00000093795 TRANSLATION protein_coding - CCDS37327.1 1 97.0 0.0 2.75 21.5 87.7 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000034362 Csta1 ENSMUST00000161638 ENSMUSP00000125577 TRANSLATION protein_coding - - 3 63.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 3.816 MINOR ENSMUSG00000034422 Parp14 ENSMUST00000042665 ENSMUSP00000037657 TRANSLATION protein_coding - CCDS28143.1 1 1817.0 23.0 10.2 0.0 298.5 0.0 -3,-4 1.0 38 18.0 PRINCIPAL:1 ENSMUSG00000034422 Parp14 ENSMUST00000135669 - NO_TRANSLATION retained_intron ENSMUSG00000034422 Parp14 ENSMUST00000142946 - NO_TRANSLATION retained_intron ENSMUSG00000022840 Adcy5 ENSMUST00000232470 - NO_TRANSLATION retained_intron ENSMUSG00000022840 Adcy5 ENSMUST00000114913 ENSMUSP00000110563 TRANSLATION protein_coding - CCDS37322.1 1 1262.0 8.0 8.332 6.7 1303.1 0.0 -4,-7 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000022696 Sidt1 ENSMUST00000127567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022696 Sidt1 ENSMUST00000127124 - NO_TRANSLATION retained_intron ENSMUSG00000022696 Sidt1 ENSMUST00000136381 ENSMUSP00000115372 TRANSLATION protein_coding - CCDS28185.1 1 827.0 0.0 0.0 4.5 947.0 12.0 3,-2 1.0 5 2.0 PRINCIPAL:4 ENSMUSG00000022696 Sidt1 ENSMUST00000124651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022696 Sidt1 ENSMUST00000047446 ENSMUSP00000038433 TRANSLATION protein_coding - CCDS49853.1 1 832.0 0.0 0.0 4.5 941.0 12.0 3,-2 0.8778 5 2.0 ALTERNATIVE:1 ENSMUSG00000022696 Sidt1 ENSMUST00000147032 ENSMUSP00000114424 TRANSLATION protein_coding start - 2 62.0 0.0 0.0 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000005718 Tfap4 ENSMUST00000230875 ENSMUSP00000155303 TRANSLATION protein_coding stop - - 199.0 0.0 1.2 0.0 42.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000005718 Tfap4 ENSMUST00000005862 ENSMUSP00000005862 TRANSLATION protein_coding - CCDS27919.1 1 338.0 0.0 1.8 14.3 61.7 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000005718 Tfap4 ENSMUST00000229956 ENSMUSP00000155803 TRANSLATION protein_coding stop - - 214.0 0.0 1.8 0.0 61.7 0.0 -4,-5 0.0147 4 -2.0 MINOR ENSMUSG00000022960 Donson ENSMUST00000139324 ENSMUSP00000120957 TRANSLATION nonsense_mediated_decay - - 1 205.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0328 1 -2.0 MINOR ENSMUSG00000022960 Donson ENSMUST00000117159 ENSMUSP00000113220 TRANSLATION protein_coding - - 1 502.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0545 3 0.0 MINOR ENSMUSG00000022960 Donson ENSMUST00000145833 ENSMUSP00000122506 TRANSLATION nonsense_mediated_decay start - 5 160.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0104 2 -2.0 MINOR ENSMUSG00000022960 Donson ENSMUST00000231425 - NO_TRANSLATION retained_intron ENSMUSG00000022960 Donson ENSMUST00000023682 ENSMUSP00000023682 TRANSLATION protein_coding - CCDS28330.1 1 560.0 0.0 0.0 5.2 0.0 0.0 -4,-1 1.0 3 2.0 PRINCIPAL:1 ENSMUSG00000022960 Donson ENSMUST00000114031 ENSMUSP00000109665 TRANSLATION protein_coding - - 5 489.0 0.0 0.0 0.1 0.0 0.0 -4,-1 0.0935 3 0.0 MINOR ENSMUSG00000022960 Donson ENSMUST00000138560 ENSMUSP00000121591 TRANSLATION protein_coding start - 5 530.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.066 3 -2.0 MINOR ENSMUSG00000022960 Donson ENSMUST00000123893 - NO_TRANSLATION retained_intron ENSMUSG00000022960 Donson ENSMUST00000136699 ENSMUSP00000122778 TRANSLATION nonsense_mediated_decay start - 5 156.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0104 2 -2.0 MINOR ENSMUSG00000022960 Donson ENSMUST00000231459 ENSMUSP00000156028 TRANSLATION protein_coding start - - 97.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0167 - -2.0 MINOR ENSMUSG00000022960 Donson ENSMUST00000133942 ENSMUSP00000121386 TRANSLATION protein_coding start - 5 348.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0286 1 -2.0 MINOR ENSMUSG00000022960 Donson ENSMUST00000144461 ENSMUSP00000123648 TRANSLATION nonsense_mediated_decay - - 5 131.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0243 - -2.0 MINOR ENSMUSG00000022960 Donson ENSMUST00000232177 - NO_TRANSLATION retained_intron ENSMUSG00000004462 Tbccd1 ENSMUST00000232075 ENSMUSP00000156210 TRANSLATION protein_coding - CCDS49798.1 - 552.0 0.0 0.2 0.0 128.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000004462 Tbccd1 ENSMUST00000232681 - NO_TRANSLATION retained_intron ENSMUSG00000004462 Tbccd1 ENSMUST00000232555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004462 Tbccd1 ENSMUST00000232345 ENSMUSP00000156050 TRANSLATION nonsense_mediated_decay - - - 294.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0019 - -2.0 MINOR ENSMUSG00000004462 Tbccd1 ENSMUST00000231513 ENSMUSP00000156008 TRANSLATION protein_coding stop - - 112.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000004462 Tbccd1 ENSMUST00000232009 - NO_TRANSLATION retained_intron ENSMUSG00000004462 Tbccd1 ENSMUST00000232251 ENSMUSP00000155954 TRANSLATION protein_coding stop - - 212.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000004462 Tbccd1 ENSMUST00000004576 ENSMUSP00000004576 TRANSLATION protein_coding - CCDS49798.1 1 552.0 0.0 0.2 0.0 128.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000004462 Tbccd1 ENSMUST00000231229 ENSMUSP00000156310 TRANSLATION nonsense_mediated_decay start - - 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004462 Tbccd1 ENSMUST00000231267 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047746 Fbxo40 ENSMUST00000127808 - NO_TRANSLATION retained_intron ENSMUSG00000047746 Fbxo40 ENSMUST00000132511 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047746 Fbxo40 ENSMUST00000075869 ENSMUSP00000075266 TRANSLATION protein_coding - CCDS37337.1 1 710.0 16.0 0.0 8.7 292.6 0.0 -4,-2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000047746 Fbxo40 ENSMUST00000114806 ENSMUSP00000110454 TRANSLATION protein_coding - CCDS37337.1 1 710.0 16.0 0.0 8.7 292.6 0.0 -4,-2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000014301 Pam16 ENSMUST00000014445 ENSMUSP00000014445 TRANSLATION protein_coding - CCDS37241.1 1 125.0 0.0 3.58 19.5 201.5 0.0 -3,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000014301 Pam16 ENSMUST00000131250 - NO_TRANSLATION retained_intron ENSMUSG00000014301 Pam16 ENSMUST00000229767 - NO_TRANSLATION retained_intron ENSMUSG00000014301 Pam16 ENSMUST00000139534 - NO_TRANSLATION retained_intron ENSMUSG00000014301 Pam16 ENSMUST00000156889 ENSMUSP00000119723 TRANSLATION nonsense_mediated_decay - - 3 39.0 0.0 0.75 0.0 38.7 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000022756 Slc7a4 ENSMUST00000232385 ENSMUSP00000156098 TRANSLATION protein_coding - - - 430.0 0.0 3.9 0.0 103.0 19.0 -4,-2 0.0022 3 2.04 MINOR ENSMUSG00000022756 Slc7a4 ENSMUST00000172164 ENSMUSP00000127280 TRANSLATION protein_coding - CCDS28008.1 1 635.0 0.0 6.23 6.5 191.3 28.0 -4,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000022756 Slc7a4 ENSMUST00000231645 ENSMUSP00000155908 TRANSLATION protein_coding stop - - 242.0 0.0 2.88 0.0 36.4 8.0 -3,0 0.0026 2 -2.0 MINOR ENSMUSG00000022756 Slc7a4 ENSMUST00000063544 ENSMUSP00000067243 TRANSLATION protein_coding - CCDS28008.1 1 635.0 0.0 6.23 6.5 191.3 28.0 -4,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000022756 Slc7a4 ENSMUST00000231615 ENSMUSP00000156027 TRANSLATION protein_coding - - - 430.0 0.0 3.9 0.0 103.0 19.0 -4,-2 0.0022 3 2.04 MINOR ENSMUSG00000022756 Slc7a4 ENSMUST00000232186 ENSMUSP00000156113 TRANSLATION protein_coding stop - - 76.0 0.0 0.5 0.0 0.0 3.0 -4,-1 0.0002 2 -2.0 MINOR ENSMUSG00000022756 Slc7a4 ENSMUST00000231283 ENSMUSP00000155885 TRANSLATION protein_coding stop - - 117.0 0.0 1.48 0.0 25.3 6.0 -4,-1 0.0022 2 -2.0 MINOR ENSMUSG00000022756 Slc7a4 ENSMUST00000232226 ENSMUSP00000156166 TRANSLATION protein_coding - - - 452.0 0.0 4.63 0.0 107.1 17.0 -4,-1 0.0027 2 3.75 MINOR ENSMUSG00000022756 Slc7a4 ENSMUST00000231552 ENSMUSP00000156257 TRANSLATION protein_coding stop - - 140.0 0.0 2.4 0.0 35.0 8.0 -4,-1 0.0022 2 -2.0 MINOR ENSMUSG00000022756 Slc7a4 ENSMUST00000232429 - NO_TRANSLATION retained_intron ENSMUSG00000022756 Slc7a4 ENSMUST00000232336 ENSMUSP00000156294 TRANSLATION protein_coding stop - - 81.0 0.0 0.4 0.0 0.0 3.0 -4,-1 0.0002 2 -2.0 MINOR ENSMUSG00000063445 Nmral1 ENSMUST00000124977 - NO_TRANSLATION retained_intron ENSMUSG00000063445 Nmral1 ENSMUST00000115851 ENSMUSP00000111517 TRANSLATION protein_coding - CCDS70679.1 1 291.0 23.0 3.5 0.0 51.6 0.0 -3,-6 0.0981 6 14.238 MINOR ENSMUSG00000063445 Nmral1 ENSMUST00000125140 - NO_TRANSLATION retained_intron ENSMUSG00000063445 Nmral1 ENSMUST00000074970 ENSMUSP00000074500 TRANSLATION protein_coding - CCDS70680.1 1 243.0 23.0 3.5 0.0 51.6 0.0 -3,-6 0.0347 6 14.238 MINOR ENSMUSG00000063445 Nmral1 ENSMUST00000120056 ENSMUSP00000112754 TRANSLATION protein_coding - CCDS70678.1 1 299.0 23.0 5.25 17.7 51.6 0.0 -3,-6 1.0 9 21.736 PRINCIPAL:1 ENSMUSG00000063445 Nmral1 ENSMUST00000079130 ENSMUSP00000078132 TRANSLATION protein_coding - CCDS27923.1 1 309.0 23.0 5.382 0.1 48.0 0.0 -3,-6 0.1167 9 17.58 MINOR ENSMUSG00000059305 Vpreb1a ENSMUST00000232670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059305 Vpreb1a ENSMUST00000231345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059305 Vpreb1a ENSMUST00000075017 ENSMUSP00000074537 TRANSLATION protein_coding - CCDS27989.1 1 142.0 0.0 1.1 0.0 78.9 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059305 Vpreb1a ENSMUST00000231704 - NO_TRANSLATION retained_intron ENSMUSG00000054604 Cggbp1 ENSMUST00000067744 ENSMUSP00000065845 TRANSLATION protein_coding - CCDS28266.1 1 167.0 4.0 0.0 20.5 0.0 0.0 -4,-2 1.0 8 8.0 PRINCIPAL:1 ENSMUSG00000054604 Cggbp1 ENSMUST00000136532 - NO_TRANSLATION retained_intron ENSMUSG00000022510 Trp63 ENSMUST00000115307 ENSMUSP00000110962 TRANSLATION protein_coding - - 1 231.0 0.0 0.8 0.0 31.6 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000022510 Trp63 ENSMUST00000115310 ENSMUSP00000110965 TRANSLATION protein_coding - CCDS49809.1 1 680.0 4.0 8.2 17.0 475.2 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:4 ENSMUSG00000022510 Trp63 ENSMUST00000115306 ENSMUSP00000110961 TRANSLATION protein_coding - CCDS49811.1 1 582.0 4.0 8.2 16.2 475.2 0.0 -4,-5 0.9104 7 15.8 ALTERNATIVE:1 ENSMUSG00000022510 Trp63 ENSMUST00000065523 ENSMUSP00000067005 TRANSLATION protein_coding - CCDS49810.1 1 555.0 4.0 6.6 6.2 435.7 0.0 -4,-5 0.2005 6 9.436 MINOR ENSMUSG00000022510 Trp63 ENSMUST00000115308 ENSMUSP00000110963 TRANSLATION protein_coding - CCDS49808.1 1 483.0 4.0 6.4 8.0 435.7 0.0 -4,-5 0.3461 4 9.486 MINOR ENSMUSG00000022510 Trp63 ENSMUST00000115305 ENSMUSP00000110960 TRANSLATION protein_coding - CCDS49812.1 1 393.0 4.0 6.4 4.7 435.7 0.0 -4,-5 0.1557 4 8.658 MINOR ENSMUSG00000022510 Trp63 ENSMUST00000115304 ENSMUSP00000110959 TRANSLATION protein_coding - - 1 284.0 4.0 4.8 0.0 369.3 0.0 -4,-5 0.0004 3 4.666 MINOR ENSMUSG00000022510 Trp63 ENSMUST00000040231 ENSMUSP00000038117 TRANSLATION protein_coding - CCDS28085.1 1 586.0 4.0 8.2 16.2 475.2 0.0 -4,-5 0.9104 7 15.8 ALTERNATIVE:1 ENSMUSG00000022895 Ets2 ENSMUST00000233550 - NO_TRANSLATION retained_intron ENSMUSG00000022895 Ets2 ENSMUST00000233499 - NO_TRANSLATION retained_intron ENSMUSG00000022895 Ets2 ENSMUST00000233578 - NO_TRANSLATION retained_intron ENSMUSG00000022895 Ets2 ENSMUST00000232792 ENSMUSP00000156757 TRANSLATION protein_coding stop - - 282.0 0.0 2.0 0.0 112.5 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000022895 Ets2 ENSMUST00000233908 - NO_TRANSLATION retained_intron ENSMUSG00000022895 Ets2 ENSMUST00000023612 ENSMUSP00000023612 TRANSLATION protein_coding - CCDS37412.1 1 468.0 0.0 4.8 13.1 237.1 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000022913 Psmg1 ENSMUST00000233134 - NO_TRANSLATION retained_intron ENSMUSG00000022913 Psmg1 ENSMUST00000233590 ENSMUSP00000156613 TRANSLATION nonsense_mediated_decay - - - 64.0 0.0 0.0 0.0 46.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022913 Psmg1 ENSMUST00000023630 ENSMUSP00000023630 TRANSLATION protein_coding - CCDS28352.1 1 289.0 0.0 0.0 15.4 430.0 0.0 -4,-5 1.0 11 10.0 PRINCIPAL:1 ENSMUSG00000022913 Psmg1 ENSMUST00000233128 ENSMUSP00000156722 TRANSLATION protein_coding - - - 268.0 0.0 0.0 1.7 202.0 0.0 -4,-5 0.0345 11 0.196 MINOR ENSMUSG00000022828 Gtf2e1 ENSMUST00000023525 ENSMUSP00000023525 TRANSLATION protein_coding - CCDS28160.1 1 440.0 4.0 4.0 20.5 284.2 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000022828 Gtf2e1 ENSMUST00000130350 - NO_TRANSLATION retained_intron ENSMUSG00000004842 Pou1f1 ENSMUST00000175882 - NO_TRANSLATION retained_intron ENSMUSG00000004842 Pou1f1 ENSMUST00000184525 ENSMUSP00000139087 TRANSLATION protein_coding - - 1 289.0 0.0 2.98 0.0 182.4 0.0 -4,-7 0.1214 - 8.0 MINOR ENSMUSG00000004842 Pou1f1 ENSMUST00000176038 ENSMUSP00000135574 TRANSLATION protein_coding - - 5 317.0 0.0 2.98 11.9 182.4 0.0 -4,-6 0.7804 - 11.604 ALTERNATIVE:1 ENSMUSG00000004842 Pou1f1 ENSMUST00000176330 ENSMUSP00000135113 TRANSLATION protein_coding - CCDS57033.1 1 291.0 0.0 2.98 13.1 182.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000095992 Krtap22-2 ENSMUST00000178913 ENSMUSP00000137005 TRANSLATION protein_coding - CCDS57036.1 - 67.0 0.0 0.0 0.0 23.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000104975 Iglj2 ENSMUST00000197969 ENSMUSP00000142566 TRANSLATION IG_J_gene start/stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000033653 Vps8 ENSMUST00000231484 - NO_TRANSLATION retained_intron ENSMUSG00000033653 Vps8 ENSMUST00000118138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033653 Vps8 ENSMUST00000127903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033653 Vps8 ENSMUST00000118923 ENSMUSP00000112636 TRANSLATION protein_coding - CCDS70700.1 5 1399.0 8.0 21.98 0.0 196.4 0.0 -4,-5 0.3411 31 17.202 MINOR ENSMUSG00000033653 Vps8 ENSMUST00000134650 - NO_TRANSLATION retained_intron ENSMUSG00000033653 Vps8 ENSMUST00000117598 ENSMUSP00000112937 TRANSLATION protein_coding - CCDS70701.1 1 1427.0 8.0 22.38 9.6 196.4 0.0 -4,-5 1.0 31 21.0 PRINCIPAL:1 ENSMUSG00000033653 Vps8 ENSMUST00000232357 ENSMUSP00000156131 TRANSLATION nonsense_mediated_decay start - - 118.0 0.0 0.89 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033653 Vps8 ENSMUST00000139473 ENSMUSP00000119311 TRANSLATION protein_coding stop - 3 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0069 - -2.0 MINOR ENSMUSG00000033653 Vps8 ENSMUST00000125487 ENSMUSP00000114719 TRANSLATION protein_coding start - 1 964.0 8.0 13.8 0.0 196.4 0.0 -4,-5 0.0422 19 -2.0 MINOR ENSMUSG00000033653 Vps8 ENSMUST00000231224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033653 Vps8 ENSMUST00000150765 - NO_TRANSLATION retained_intron ENSMUSG00000033653 Vps8 ENSMUST00000096191 ENSMUSP00000093905 TRANSLATION protein_coding - - 1 1292.0 2.0 22.38 0.0 196.4 0.0 -4,-5 0.2101 28 13.5 MINOR ENSMUSG00000033653 Vps8 ENSMUST00000232132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033653 Vps8 ENSMUST00000156580 ENSMUSP00000114139 TRANSLATION nonsense_mediated_decay start - 2 75.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090515 Krtap27-1 ENSMUST00000165580 ENSMUSP00000129289 TRANSLATION protein_coding - CCDS49892.1 - 202.0 0.0 0.0 5.0 71.8 0.0 -4,-2 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000060057 Or5h25 ENSMUST00000076262 ENSMUSP00000075611 TRANSLATION protein_coding - CCDS28245.1 - 309.0 0.0 2.0 10.4 163.4 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060057 Or5h25 ENSMUST00000207935 ENSMUSP00000146443 TRANSLATION protein_coding stop - 3 136.0 0.0 1.0 0.0 73.2 3.0 -3,-5 0.0015 - -2.0 MINOR ENSMUSG00000060057 Or5h25 ENSMUST00000208455 ENSMUSP00000146393 TRANSLATION protein_coding - CCDS28245.1 3 309.0 0.0 2.0 10.4 163.4 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036172 Cd200r3 ENSMUST00000114622 ENSMUSP00000110269 TRANSLATION protein_coding - CCDS49858.1 1 205.0 0.0 0.6 0.0 0.0 3.0 2,-3 0.3511 - 2.25 MINOR ENSMUSG00000036172 Cd200r3 ENSMUST00000077178 ENSMUSP00000076421 TRANSLATION protein_coding - - 1 223.0 0.0 0.6 0.0 0.0 3.0 2,-3 0.1402 - 2.25 MINOR ENSMUSG00000036172 Cd200r3 ENSMUST00000171779 ENSMUSP00000132938 TRANSLATION protein_coding - CCDS49859.1 1 202.0 0.0 0.6 0.0 0.0 3.0 2,-3 0.3489 - 2.25 MINOR ENSMUSG00000036172 Cd200r3 ENSMUST00000163358 - NO_TRANSLATION retained_intron ENSMUSG00000036172 Cd200r3 ENSMUST00000048479 ENSMUSP00000036624 TRANSLATION protein_coding - - 1 296.0 0.0 1.6 0.0 0.0 3.0 2,-3 0.7711 - 6.0 PRINCIPAL:4 ENSMUSG00000036172 Cd200r3 ENSMUST00000114612 ENSMUSP00000110259 TRANSLATION protein_coding - - 1 211.0 0.0 0.6 0.0 0.0 3.0 2,-3 0.1372 - 2.25 MINOR ENSMUSG00000036172 Cd200r3 ENSMUST00000164007 ENSMUSP00000130480 TRANSLATION protein_coding - CCDS49857.1 1 275.0 0.0 1.6 0.0 0.0 3.0 2,-3 0.6021 - 6.0 ALTERNATIVE:2 ENSMUSG00000036172 Cd200r3 ENSMUST00000114611 ENSMUSP00000110258 TRANSLATION protein_coding - CCDS49856.1 1 278.0 0.0 1.6 0.0 0.0 3.0 2,-3 0.6106 - 6.0 ALTERNATIVE:2 ENSMUSG00000036172 Cd200r3 ENSMUST00000114613 ENSMUSP00000110260 TRANSLATION protein_coding - - 1 284.0 0.0 1.6 0.0 0.0 3.0 2,-3 0.2971 - 6.0 ALTERNATIVE:2 ENSMUSG00000036172 Cd200r3 ENSMUST00000166731 ENSMUSP00000128974 TRANSLATION protein_coding - - 1 273.0 0.0 1.6 0.0 0.0 3.0 2,-3 0.2472 - 6.0 ALTERNATIVE:2 ENSMUSG00000022765 Snap29 ENSMUST00000023449 ENSMUSP00000023449 TRANSLATION protein_coding - CCDS28001.1 1 260.0 0.0 3.4 12.7 0.0 0.0 -4,-5 1.0 11 9.0 PRINCIPAL:1 ENSMUSG00000039672 Kcne2 ENSMUST00000047383 ENSMUSP00000048849 TRANSLATION protein_coding - CCDS28333.1 1 123.0 0.0 1.0 17.6 58.9 1.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000039672 Kcne2 ENSMUST00000113971 ENSMUSP00000109604 TRANSLATION protein_coding - CCDS28333.1 1 123.0 0.0 1.0 17.6 58.9 1.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022792 Yars2 ENSMUST00000159962 ENSMUSP00000125252 TRANSLATION protein_coding - - 2 349.0 21.0 2.715 0.0 203.4 0.0 -1,3 0.0009 8 9.558 MINOR ENSMUSG00000022792 Yars2 ENSMUST00000059955 ENSMUSP00000055277 TRANSLATION protein_coding - CCDS27983.1 1 472.0 21.0 6.05 7.3 244.1 0.0 -1,3 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000022792 Yars2 ENSMUST00000159683 ENSMUSP00000124606 TRANSLATION nonsense_mediated_decay - - 1 349.0 21.0 2.715 0.0 203.4 0.0 -1,3 0.0009 - -2.0 MINOR ENSMUSG00000022792 Yars2 ENSMUST00000159583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022792 Yars2 ENSMUST00000161191 - NO_TRANSLATION retained_intron ENSMUSG00000022792 Yars2 ENSMUST00000162734 ENSMUSP00000125496 TRANSLATION protein_coding start/stop - 5 125.0 0.0 2.165 0.0 24.4 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000105906 Iglc1 ENSMUST00000200568 ENSMUSP00000142686 TRANSLATION IG_C_gene start - - 106.0 0.0 1.0 0.0 109.1 0.0 -4,-5 0.7829 4 -2.0 PRINCIPAL:1 ENSMUSG00000033581 Igf2bp2 ENSMUST00000125926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033581 Igf2bp2 ENSMUST00000134188 - NO_TRANSLATION retained_intron ENSMUSG00000033581 Igf2bp2 ENSMUST00000115379 ENSMUSP00000111037 TRANSLATION protein_coding - - 1 524.0 0.0 10.4 2.1 224.3 0.0 -4,-7 0.0975 9 7.605 MINOR ENSMUSG00000033581 Igf2bp2 ENSMUST00000100052 ENSMUSP00000097629 TRANSLATION protein_coding - CCDS49797.1 1 592.0 0.0 11.73 11.3 258.6 0.0 -4,-6 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000033581 Igf2bp2 ENSMUST00000129913 - NO_TRANSLATION retained_intron ENSMUSG00000033581 Igf2bp2 ENSMUST00000232504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033581 Igf2bp2 ENSMUST00000124318 - NO_TRANSLATION retained_intron ENSMUSG00000033581 Igf2bp2 ENSMUST00000151087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033581 Igf2bp2 ENSMUST00000127696 - NO_TRANSLATION retained_intron ENSMUSG00000033581 Igf2bp2 ENSMUST00000146885 - NO_TRANSLATION retained_intron ENSMUSG00000033581 Igf2bp2 ENSMUST00000231926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090176 Cd200r2 ENSMUST00000102805 ENSMUSP00000099869 TRANSLATION protein_coding - CCDS28191.1 1 249.0 0.0 2.0 0.3 70.2 0.0 1,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025612 Bach1 ENSMUST00000156958 - NO_TRANSLATION retained_intron ENSMUSG00000025612 Bach1 ENSMUST00000151046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025612 Bach1 ENSMUST00000026703 ENSMUSP00000026703 TRANSLATION protein_coding - CCDS28293.1 1 739.0 0.0 2.0 4.0 141.8 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000039956 Mrap ENSMUST00000138984 ENSMUSP00000156282 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.0 0.0 50.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039956 Mrap ENSMUST00000038197 ENSMUSP00000043890 TRANSLATION protein_coding - CCDS28317.1 1 127.0 0.0 0.0 0.1 149.2 0.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000039956 Mrap ENSMUST00000133973 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039956 Mrap ENSMUST00000125429 ENSMUSP00000156354 TRANSLATION nonsense_mediated_decay - - 3 36.0 0.0 0.0 0.0 51.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022678 Nde1 ENSMUST00000133249 - NO_TRANSLATION retained_intron ENSMUSG00000022678 Nde1 ENSMUST00000149232 ENSMUSP00000119355 TRANSLATION protein_coding start - 2 175.0 0.0 2.0 0.0 102.0 0.0 -4,-5 0.0004 6 -2.0 MINOR ENSMUSG00000022678 Nde1 ENSMUST00000023359 ENSMUSP00000023359 TRANSLATION protein_coding - CCDS37263.2 1 344.0 0.0 5.68 16.0 163.1 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000022678 Nde1 ENSMUST00000132316 ENSMUSP00000118005 TRANSLATION nonsense_mediated_decay - - 1 88.0 0.0 1.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022678 Nde1 ENSMUST00000117958 ENSMUSP00000112817 TRANSLATION protein_coding - CCDS49770.1 1 317.0 0.0 5.68 5.8 163.1 0.0 -4,-5 0.5238 6 13.28 MINOR ENSMUSG00000022678 Nde1 ENSMUST00000115795 ENSMUSP00000111461 TRANSLATION protein_coding - CCDS70688.1 1 317.0 0.0 5.68 5.8 163.1 0.0 -4,-5 0.5238 6 13.28 MINOR ENSMUSG00000022678 Nde1 ENSMUST00000127801 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022678 Nde1 ENSMUST00000156041 - NO_TRANSLATION retained_intron ENSMUSG00000022707 Gbe1 ENSMUST00000163832 ENSMUSP00000132603 TRANSLATION protein_coding - - 5 702.0 10.0 15.5 3.4 192.5 0.0 -4,-5 1.0 25 19.0 PRINCIPAL:1 ENSMUSG00000022707 Gbe1 ENSMUST00000171132 ENSMUSP00000127642 TRANSLATION protein_coding - - 1 660.0 10.0 14.2 0.0 149.3 0.0 -4,-5 0.0014 23 12.81 MINOR ENSMUSG00000022707 Gbe1 ENSMUST00000099628 - NO_TRANSLATION retained_intron ENSMUSG00000022707 Gbe1 ENSMUST00000164300 - NO_TRANSLATION retained_intron ENSMUSG00000022707 Gbe1 ENSMUST00000169432 - NO_TRANSLATION retained_intron ENSMUSG00000096215 Smim22 ENSMUST00000178155 ENSMUSP00000137083 TRANSLATION protein_coding - CCDS57017.1 1 91.0 0.0 0.0 6.4 90.0 2.0 -4,-7 0.8745 - 3.688 ALTERNATIVE:1 ENSMUSG00000096215 Smim22 ENSMUST00000185147 ENSMUSP00000139067 TRANSLATION protein_coding - CCDS70681.1 2 86.0 0.0 0.0 7.4 90.0 2.0 -4,-7 1.0 - 4.0 PRINCIPAL:4 ENSMUSG00000096215 Smim22 ENSMUST00000183381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096215 Smim22 ENSMUST00000184439 ENSMUSP00000139370 TRANSLATION protein_coding - CCDS57017.1 2 91.0 0.0 0.0 6.4 90.0 2.0 -4,-7 0.8745 - 3.688 ALTERNATIVE:1 ENSMUSG00000096215 Smim22 ENSMUST00000183477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096215 Smim22 ENSMUST00000183631 - NO_TRANSLATION retained_intron ENSMUSG00000096215 Smim22 ENSMUST00000183821 - NO_TRANSLATION retained_intron ENSMUSG00000096215 Smim22 ENSMUST00000184256 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022768 Ccdc116 ENSMUST00000232540 ENSMUSP00000156301 TRANSLATION protein_coding - - - 686.0 0.0 0.2 0.0 722.1 0.0 -4,-5 0.1965 1 8.0 ALTERNATIVE:2 ENSMUSG00000022768 Ccdc116 ENSMUST00000115711 ENSMUSP00000111376 TRANSLATION protein_coding - CCDS27995.1 1 541.0 0.0 0.2 0.1 728.4 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000022768 Ccdc116 ENSMUST00000023452 ENSMUSP00000023452 TRANSLATION protein_coding - CCDS27995.1 1 541.0 0.0 0.2 0.1 728.4 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000022768 Ccdc116 ENSMUST00000231597 ENSMUSP00000156186 TRANSLATION protein_coding stop - - 77.0 0.0 0.0 0.0 78.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022768 Ccdc116 ENSMUST00000232033 ENSMUSP00000155923 TRANSLATION protein_coding - CCDS27995.1 - 541.0 0.0 0.2 0.1 728.4 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000039763 Dnajc28 ENSMUST00000143058 ENSMUSP00000120318 TRANSLATION protein_coding stop - 2 196.0 0.0 0.48 0.0 46.4 0.0 -4,-7 0.0274 2 -2.0 MINOR ENSMUSG00000039763 Dnajc28 ENSMUST00000049244 ENSMUSP00000048113 TRANSLATION protein_coding - CCDS49911.1 1 385.0 0.0 0.48 6.4 120.9 0.0 -4,-1 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000039763 Dnajc28 ENSMUST00000133731 ENSMUSP00000118526 TRANSLATION protein_coding stop - 3 84.0 0.0 0.4 0.0 33.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000039763 Dnajc28 ENSMUST00000169982 ENSMUSP00000132288 TRANSLATION protein_coding - CCDS49912.1 2 409.0 0.0 0.48 0.0 120.9 0.0 -4,-7 0.2359 7 12.0 MINOR ENSMUSG00000022787 Wdr53 ENSMUST00000135289 ENSMUSP00000156278 TRANSLATION protein_coding stop - 2 107.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022787 Wdr53 ENSMUST00000023474 ENSMUSP00000023474 TRANSLATION protein_coding - CCDS28118.1 1 358.0 0.0 1.4 11.9 50.1 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000022787 Wdr53 ENSMUST00000178573 ENSMUSP00000135908 TRANSLATION protein_coding - CCDS28118.1 5 358.0 0.0 1.4 11.9 50.1 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000022787 Wdr53 ENSMUST00000141820 ENSMUSP00000156152 TRANSLATION protein_coding stop - 5 258.0 0.0 1.2 0.0 21.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000047960 Or5h18 ENSMUST00000206463 ENSMUSP00000146214 TRANSLATION protein_coding - CCDS28242.1 3 309.0 0.0 1.0 10.4 162.0 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047960 Or5h18 ENSMUST00000062380 ENSMUSP00000056448 TRANSLATION protein_coding - CCDS28242.1 - 309.0 0.0 1.0 10.4 162.0 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000047960 Or5h18 ENSMUST00000216415 ENSMUSP00000150366 TRANSLATION protein_coding - CCDS28242.1 5 309.0 0.0 1.0 10.4 162.0 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056706 Krtap7-1 ENSMUST00000056118 ENSMUSP00000054720 TRANSLATION protein_coding - CCDS49902.1 - 87.0 0.0 0.0 11.3 156.1 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000043050 Tnp2 ENSMUST00000051297 ENSMUSP00000053078 TRANSLATION protein_coding - CCDS27953.1 1 117.0 0.0 0.0 0.4 107.4 0.0 -4,-2 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000039179 Tekt5 ENSMUST00000115831 ENSMUSP00000111497 TRANSLATION protein_coding - - 1 415.0 0.0 5.3 0.7 366.1 0.0 -4,-5 0.0009 10 5.244 MINOR ENSMUSG00000039179 Tekt5 ENSMUST00000043415 ENSMUSP00000046824 TRANSLATION protein_coding - CCDS70683.1 1 557.0 0.0 6.3 0.4 445.4 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000040605 Bace2 ENSMUST00000047275 ENSMUSP00000043918 TRANSLATION protein_coding - CCDS28359.1 1 514.0 5.0 8.1 0.7 153.6 0.0 1,-3 1.0 7 17.0 PRINCIPAL:1 ENSMUSG00000040605 Bace2 ENSMUST00000231664 ENSMUSP00000156270 TRANSLATION nonsense_mediated_decay start - - 118.0 0.0 2.0 0.0 36.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040605 Bace2 ENSMUST00000231783 - NO_TRANSLATION retained_intron ENSMUSG00000040605 Bace2 ENSMUST00000231892 ENSMUSP00000155906 TRANSLATION protein_coding start - - 53.0 2.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000043336 Filip1l ENSMUST00000099667 ENSMUSP00000133252 TRANSLATION protein_coding - - 1 201.0 0.0 0.6 1.2 171.9 0.0 -4,-7 0.1178 - 6.084 ALTERNATIVE:2 ENSMUSG00000043336 Filip1l ENSMUST00000159816 ENSMUSP00000124179 TRANSLATION protein_coding - CCDS37366.2 1 1131.0 0.0 0.35 4.1 208.6 0.0 -4,-7 1.0 16 6.809 PRINCIPAL:2 ENSMUSG00000043336 Filip1l ENSMUST00000159414 ENSMUSP00000124069 TRANSLATION protein_coding - CCDS49877.1 1 893.0 0.0 0.0 8.1 0.0 0.0 -4,-5 0.8173 16 3.0 MINOR ENSMUSG00000050240 Hic2 ENSMUST00000232082 ENSMUSP00000156293 TRANSLATION protein_coding - - - 566.0 9.0 0.375 0.0 109.0 0.0 -4,-7 0.0021 1 3.984 MINOR ENSMUSG00000050240 Hic2 ENSMUST00000090190 ENSMUSP00000087656 TRANSLATION protein_coding - CCDS27999.1 1 619.0 20.0 1.0 7.3 180.1 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000022519 Srl ENSMUST00000132284 - NO_TRANSLATION retained_intron ENSMUSG00000022519 Srl ENSMUST00000090500 ENSMUSP00000087986 TRANSLATION protein_coding - CCDS84202.1 1 472.0 18.0 1.63 16.2 86.9 0.0 4,-1 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000022519 Srl ENSMUST00000023161 ENSMUSP00000023161 TRANSLATION protein_coding - CCDS27918.1 1 910.0 18.0 1.63 0.0 86.9 0.0 3,-2 0.3201 31 18.0 MINOR ENSMUSG00000022519 Srl ENSMUST00000133440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022519 Srl ENSMUST00000230817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041247 Lamp3 ENSMUST00000081880 ENSMUSP00000080556 TRANSLATION protein_coding - CCDS37285.1 1 411.0 0.0 3.75 0.4 243.5 0.0 1,-3 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000023088 Abcc1 ENSMUST00000130671 ENSMUSP00000116714 TRANSLATION nonsense_mediated_decay - - 5 643.0 0.0 7.69 0.0 146.4 18.0 -4,-7 0.0027 10 -2.0 MINOR ENSMUSG00000023088 Abcc1 ENSMUST00000134776 ENSMUSP00000120933 TRANSLATION protein_coding stop - 5 199.0 0.0 1.25 0.0 0.0 8.0 -4,-7 0.0023 1 -2.0 MINOR ENSMUSG00000023088 Abcc1 ENSMUST00000230780 - NO_TRANSLATION retained_intron ENSMUSG00000023088 Abcc1 ENSMUST00000100167 ENSMUSP00000097743 TRANSLATION protein_coding - CCDS37264.1 1 1528.0 22.0 22.24 10.5 495.8 24.0 -4,-7 1.0 28 21.0 PRINCIPAL:1 ENSMUSG00000023088 Abcc1 ENSMUST00000133454 ENSMUSP00000122656 TRANSLATION nonsense_mediated_decay - - 5 643.0 0.0 7.69 0.0 146.4 18.0 -4,-7 0.0027 - -2.0 MINOR ENSMUSG00000023088 Abcc1 ENSMUST00000134960 - NO_TRANSLATION retained_intron ENSMUSG00000023088 Abcc1 ENSMUST00000154748 ENSMUSP00000115763 TRANSLATION protein_coding stop - 3 194.0 0.0 0.0 0.0 0.0 9.0 -4,-6 0.0023 1 -2.0 MINOR ENSMUSG00000023088 Abcc1 ENSMUST00000144676 ENSMUSP00000116726 TRANSLATION protein_coding stop - 2 103.0 0.0 0.0 0.0 0.0 4.0 -4,-7 0.0023 - -2.0 MINOR ENSMUSG00000023088 Abcc1 ENSMUST00000144074 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023088 Abcc1 ENSMUST00000146032 - NO_TRANSLATION retained_intron ENSMUSG00000023088 Abcc1 ENSMUST00000156089 - NO_TRANSLATION retained_intron ENSMUSG00000023088 Abcc1 ENSMUST00000147759 ENSMUSP00000115627 TRANSLATION nonsense_mediated_decay - - 5 643.0 0.0 7.69 0.0 146.4 18.0 -4,-7 0.0027 - -2.0 MINOR ENSMUSG00000072214 Septin5 ENSMUST00000249323 - NO_TRANSLATION retained_intron ENSMUSG00000072214 Septin5 ENSMUST00000232653 ENSMUSP00000156265 TRANSLATION protein_coding - - - 378.0 14.0 9.26 17.3 417.7 0.0 -4,-5 0.8817 15 18.0 ALTERNATIVE:1 ENSMUSG00000072214 Septin5 ENSMUST00000249325 - NO_TRANSLATION retained_intron ENSMUSG00000072214 Septin5 ENSMUST00000096987 ENSMUSP00000094750 TRANSLATION protein_coding - CCDS57021.1 1 369.0 14.0 9.26 14.9 417.7 0.0 -4,-5 1.0 15 17.412 PRINCIPAL:4 ENSMUSG00000072214 Septin5 ENSMUST00000231244 ENSMUSP00000156209 TRANSLATION nonsense_mediated_decay - - - 248.0 14.0 5.962 0.0 283.5 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000072214 Septin5 ENSMUST00000249324 - NO_TRANSLATION retained_intron ENSMUSG00000072214 Septin5 ENSMUST00000249322 - NO_TRANSLATION retained_intron ENSMUSG00000072214 Septin5 ENSMUST00000231956 ENSMUSP00000156292 TRANSLATION protein_coding - - - 381.0 14.0 8.76 0.0 401.0 0.0 -4,-5 0.0404 14 10.998 MINOR ENSMUSG00000072214 Septin5 ENSMUST00000231622 ENSMUSP00000156279 TRANSLATION protein_coding stop - - 126.0 7.0 3.08 0.0 187.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000106405 Iglj3p ENSMUST00000200074 ENSMUSP00000143285 TRANSLATION IG_J_gene start/stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000022912 Pros1 ENSMUST00000127502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022912 Pros1 ENSMUST00000155940 - NO_TRANSLATION retained_intron ENSMUSG00000022912 Pros1 ENSMUST00000023629 ENSMUSP00000023629 TRANSLATION protein_coding - CCDS28263.1 1 675.0 10.0 12.238 7.7 263.7 0.0 3,-3 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000022744 Cldnd1 ENSMUST00000159829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022744 Cldnd1 ENSMUST00000159944 ENSMUSP00000124455 TRANSLATION nonsense_mediated_decay - - 5 99.0 0.0 0.0 0.0 0.0 1.0 -1,-5 0.0015 3 -2.0 MINOR ENSMUSG00000022744 Cldnd1 ENSMUST00000162191 ENSMUSP00000124461 TRANSLATION protein_coding stop - 5 123.0 0.0 0.0 0.0 0.0 1.0 -1,-5 0.0015 5 -2.0 MINOR ENSMUSG00000022744 Cldnd1 ENSMUST00000023426 ENSMUSP00000023426 TRANSLATION protein_coding - CCDS28234.1 1 253.0 0.0 0.716 22.7 79.7 4.0 -1,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022744 Cldnd1 ENSMUST00000162057 ENSMUSP00000125497 TRANSLATION protein_coding - CCDS28234.1 5 253.0 0.0 0.716 22.7 79.7 4.0 -1,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022744 Cldnd1 ENSMUST00000162249 - NO_TRANSLATION retained_intron ENSMUSG00000038037 Socs1 ENSMUST00000229866 ENSMUSP00000155530 TRANSLATION protein_coding - CCDS27952.1 - 212.0 0.0 1.0 10.4 63.4 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038037 Socs1 ENSMUST00000038099 ENSMUSP00000038121 TRANSLATION protein_coding - CCDS27952.1 1 212.0 0.0 1.0 10.4 63.4 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022505 Emp2 ENSMUST00000230141 - NO_TRANSLATION retained_intron ENSMUSG00000022505 Emp2 ENSMUST00000078357 ENSMUSP00000077466 TRANSLATION protein_coding - CCDS37250.1 1 172.0 0.0 3.75 13.1 196.7 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000063137 Or5k14 ENSMUST00000217377 ENSMUSP00000150269 TRANSLATION protein_coding - CCDS49880.1 5 309.0 0.0 1.0 11.5 177.7 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063137 Or5k14 ENSMUST00000072853 ENSMUSP00000072631 TRANSLATION protein_coding - CCDS49880.1 - 309.0 0.0 1.0 11.5 177.7 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022677 Cep20 ENSMUST00000126427 - NO_TRANSLATION retained_intron ENSMUSG00000022677 Cep20 ENSMUST00000120707 ENSMUSP00000113348 TRANSLATION protein_coding - - 5 139.0 0.0 2.014 0.1 55.7 0.0 -4,-5 0.0052 1 10.428 MINOR ENSMUSG00000022677 Cep20 ENSMUST00000230495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022677 Cep20 ENSMUST00000148278 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022677 Cep20 ENSMUST00000023357 ENSMUSP00000023357 TRANSLATION protein_coding - CCDS27973.1 1 174.0 0.0 2.344 5.3 63.4 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000055447 Cd47 ENSMUST00000231187 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055447 Cd47 ENSMUST00000229206 ENSMUSP00000155289 TRANSLATION protein_coding - - - 321.0 0.0 2.0 9.1 349.8 15.0 3,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000055447 Cd47 ENSMUST00000230836 ENSMUSP00000155684 TRANSLATION protein_coding - - - 267.0 0.0 2.0 0.0 277.0 12.0 3,-2 0.0522 5 7.632 MINOR ENSMUSG00000055447 Cd47 ENSMUST00000114496 ENSMUSP00000110140 TRANSLATION protein_coding - - 1 271.0 0.0 1.0 0.0 276.6 15.0 -4,-5 0.0054 5 4.608 MINOR ENSMUSG00000055447 Cd47 ENSMUST00000229104 ENSMUSP00000155699 TRANSLATION protein_coding - - - 258.0 0.0 1.0 1.1 290.5 15.0 -4,-6 0.0175 4 5.478 MINOR ENSMUSG00000055447 Cd47 ENSMUST00000229640 ENSMUSP00000155544 TRANSLATION protein_coding - - - 271.0 0.0 1.0 0.0 276.6 15.0 -4,-5 0.0054 5 4.608 MINOR ENSMUSG00000055447 Cd47 ENSMUST00000229101 ENSMUSP00000155856 TRANSLATION protein_coding - - - 278.0 0.0 1.0 0.0 276.6 15.0 -4,-5 0.0039 5 4.608 MINOR ENSMUSG00000055447 Cd47 ENSMUST00000230281 ENSMUSP00000154914 TRANSLATION protein_coding - - - 258.0 0.0 1.0 1.1 290.5 15.0 -4,-6 0.0175 4 5.478 MINOR ENSMUSG00000055447 Cd47 ENSMUST00000084838 ENSMUSP00000099853 TRANSLATION protein_coding - CCDS28212.1 1 324.0 0.0 2.0 0.3 335.1 15.0 3,-2 0.3427 6 11.118 MINOR ENSMUSG00000055447 Cd47 ENSMUST00000230641 ENSMUSP00000155178 TRANSLATION protein_coding - - - 342.0 0.0 2.0 0.3 335.1 15.0 3,-2 0.1244 8 11.118 MINOR ENSMUSG00000055540 Epha6 ENSMUST00000161358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055540 Epha6 ENSMUST00000162129 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055540 Epha6 ENSMUST00000159383 - NO_TRANSLATION retained_intron ENSMUSG00000055540 Epha6 ENSMUST00000068860 ENSMUSP00000066734 TRANSLATION protein_coding - CCDS28260.2 1 1130.0 18.0 11.3 6.7 793.2 0.0 -4,-2 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000022800 Fyttd1 ENSMUST00000143151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022800 Fyttd1 ENSMUST00000149183 - NO_TRANSLATION retained_intron ENSMUSG00000022800 Fyttd1 ENSMUST00000232272 ENSMUSP00000155929 TRANSLATION protein_coding - - - 199.0 0.0 0.0 0.0 361.4 0.0 -4,-7 0.0009 6 0.0 MINOR ENSMUSG00000022800 Fyttd1 ENSMUST00000127493 - NO_TRANSLATION retained_intron ENSMUSG00000022800 Fyttd1 ENSMUST00000125843 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022800 Fyttd1 ENSMUST00000135854 - NO_TRANSLATION retained_intron ENSMUSG00000022800 Fyttd1 ENSMUST00000120345 ENSMUSP00000113541 TRANSLATION protein_coding - - 5 129.0 0.0 0.0 0.0 218.5 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000022800 Fyttd1 ENSMUST00000141590 - NO_TRANSLATION retained_intron ENSMUSG00000022800 Fyttd1 ENSMUST00000145146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022800 Fyttd1 ENSMUST00000023489 ENSMUSP00000023489 TRANSLATION protein_coding - CCDS28125.1 1 317.0 0.0 0.0 10.8 575.6 0.0 -4,-2 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000022800 Fyttd1 ENSMUST00000232300 - NO_TRANSLATION retained_intron ENSMUSG00000022800 Fyttd1 ENSMUST00000137863 - NO_TRANSLATION retained_intron ENSMUSG00000022800 Fyttd1 ENSMUST00000171325 ENSMUSP00000131446 TRANSLATION protein_coding - CCDS49833.1 1 283.0 0.0 0.0 0.1 346.4 0.0 -4,-2 0.0305 6 0.0 MINOR ENSMUSG00000022800 Fyttd1 ENSMUST00000231751 - NO_TRANSLATION retained_intron ENSMUSG00000022722 Arl6 ENSMUST00000099646 ENSMUSP00000097238 TRANSLATION protein_coding - CCDS84248.1 1 193.0 21.0 5.165 13.3 181.0 0.0 -4,-5 0.4961 8 19.016 MINOR ENSMUSG00000022722 Arl6 ENSMUST00000149797 ENSMUSP00000123287 TRANSLATION protein_coding stop - 3 194.0 18.0 4.5 0.0 122.9 0.0 -4,-5 0.011 6 -2.0 MINOR ENSMUSG00000022722 Arl6 ENSMUST00000118438 ENSMUSP00000113127 TRANSLATION protein_coding - CCDS84248.1 3 193.0 21.0 5.165 13.3 181.0 0.0 -4,-5 0.4961 8 19.016 MINOR ENSMUSG00000022722 Arl6 ENSMUST00000023405 ENSMUSP00000023405 TRANSLATION protein_coding - CCDS28259.1 1 186.0 21.0 5.33 35.8 182.1 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000106039 Iglc4 ENSMUST00000197046 ENSMUSP00000142806 TRANSLATION IG_C_gene start - - 104.0 0.0 1.0 0.0 85.3 0.0 -4,-6 0.7674 - -2.0 PRINCIPAL:1 ENSMUSG00000071533 Pcnp ENSMUST00000137736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071533 Pcnp ENSMUST00000119981 ENSMUSP00000112565 TRANSLATION protein_coding - - 3 111.0 0.0 0.0 0.1 193.6 0.0 -4,0 0.0021 3 4.014 MINOR ENSMUSG00000071533 Pcnp ENSMUST00000096021 ENSMUSP00000093720 TRANSLATION protein_coding - - 5 189.0 0.0 0.0 0.8 226.7 0.0 -4,-7 0.1318 5 6.0 MINOR ENSMUSG00000071533 Pcnp ENSMUST00000122253 ENSMUSP00000113605 TRANSLATION protein_coding - - 1 147.0 0.0 0.0 0.0 142.7 0.0 -4,-5 0.0004 6 0.96 MINOR ENSMUSG00000071533 Pcnp ENSMUST00000130818 ENSMUSP00000115493 TRANSLATION nonsense_mediated_decay - - 2 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000071533 Pcnp ENSMUST00000140227 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071533 Pcnp ENSMUST00000125040 ENSMUSP00000114818 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000071533 Pcnp ENSMUST00000114444 ENSMUSP00000110087 TRANSLATION protein_coding - CCDS37357.1 1 178.0 0.0 0.0 15.3 226.7 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000047109 Cldn14 ENSMUST00000050962 ENSMUSP00000062045 TRANSLATION protein_coding - CCDS28345.1 1 239.0 0.0 2.15 18.7 101.2 5.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047109 Cldn14 ENSMUST00000169391 ENSMUSP00000126455 TRANSLATION protein_coding - CCDS28345.1 2 239.0 0.0 2.15 18.7 101.2 5.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047109 Cldn14 ENSMUST00000137163 ENSMUSP00000155889 TRANSLATION protein_coding stop - 2 50.0 0.0 0.8 0.0 0.0 2.0 1,-3 0.0039 - -2.0 MINOR ENSMUSG00000047109 Cldn14 ENSMUST00000177648 ENSMUSP00000136156 TRANSLATION protein_coding - CCDS28345.1 2 239.0 0.0 2.15 18.7 101.2 5.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000047109 Cldn14 ENSMUST00000232406 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047109 Cldn14 ENSMUST00000142083 ENSMUSP00000156176 TRANSLATION protein_coding stop - 2 69.0 0.0 1.3 0.0 32.7 2.0 1,-3 0.0033 - -2.0 MINOR ENSMUSG00000034473 Sec22a ENSMUST00000154064 ENSMUSP00000155996 TRANSLATION nonsense_mediated_decay - - 3 181.0 0.0 1.28 0.0 71.3 0.0 -4,-7 0.1022 4 -2.0 MINOR ENSMUSG00000034473 Sec22a ENSMUST00000154216 - NO_TRANSLATION retained_intron ENSMUSG00000034473 Sec22a ENSMUST00000232420 ENSMUSP00000156164 TRANSLATION protein_coding - - - 285.0 0.0 1.28 2.7 71.3 2.0 -4,-7 0.2364 4 12.212 MINOR ENSMUSG00000034473 Sec22a ENSMUST00000043521 ENSMUSP00000039568 TRANSLATION protein_coding - CCDS28138.1 1 307.0 0.0 1.28 32.8 71.3 3.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000034473 Sec22a ENSMUST00000138355 - NO_TRANSLATION retained_intron ENSMUSG00000034473 Sec22a ENSMUST00000141087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022747 St3gal6 ENSMUST00000149197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022747 St3gal6 ENSMUST00000151510 ENSMUSP00000156169 TRANSLATION protein_coding stop - 3 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0068 - -2.0 MINOR ENSMUSG00000022747 St3gal6 ENSMUST00000125712 ENSMUSP00000156105 TRANSLATION protein_coding stop - 3 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022747 St3gal6 ENSMUST00000123918 ENSMUSP00000117849 TRANSLATION protein_coding stop - 3 26.0 0.0 0.0 0.0 0.0 2.0 -1,-5 0.0026 - -2.0 MINOR ENSMUSG00000022747 St3gal6 ENSMUST00000232391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022747 St3gal6 ENSMUST00000149456 ENSMUSP00000156226 TRANSLATION protein_coding stop - 3 50.0 0.0 0.2 0.0 0.0 2.0 0,-5 0.0042 1 -2.0 MINOR ENSMUSG00000022747 St3gal6 ENSMUST00000135721 - NO_TRANSLATION retained_intron ENSMUSG00000022747 St3gal6 ENSMUST00000148061 ENSMUSP00000155951 TRANSLATION protein_coding stop - 3 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022747 St3gal6 ENSMUST00000126978 ENSMUSP00000116202 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 2.0 0,-5 0.0045 - -2.0 MINOR ENSMUSG00000022747 St3gal6 ENSMUST00000114357 ENSMUSP00000109997 TRANSLATION protein_coding - CCDS28230.1 1 329.0 11.0 4.95 13.0 204.9 2.0 0,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000022747 St3gal6 ENSMUST00000142900 ENSMUSP00000156309 TRANSLATION protein_coding stop - 2 5.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0068 - -2.0 MINOR ENSMUSG00000022747 St3gal6 ENSMUST00000137035 ENSMUSP00000115756 TRANSLATION protein_coding - CCDS28230.1 1 329.0 11.0 4.95 13.0 204.9 2.0 0,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000022747 St3gal6 ENSMUST00000137850 - NO_TRANSLATION retained_intron ENSMUSG00000022747 St3gal6 ENSMUST00000145283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022747 St3gal6 ENSMUST00000114358 ENSMUSP00000109998 TRANSLATION protein_coding - CCDS28230.1 1 329.0 11.0 4.95 13.0 204.9 2.0 0,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000033031 Cip2a ENSMUST00000130080 - NO_TRANSLATION retained_intron ENSMUSG00000033031 Cip2a ENSMUST00000125278 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033031 Cip2a ENSMUST00000117994 ENSMUSP00000113075 TRANSLATION protein_coding - - 5 907.0 0.0 9.51 11.5 0.0 0.0 -4,-7 0.8413 10 9.0 ALTERNATIVE:1 ENSMUSG00000033031 Cip2a ENSMUST00000133754 - NO_TRANSLATION retained_intron ENSMUSG00000033031 Cip2a ENSMUST00000149004 - NO_TRANSLATION retained_intron ENSMUSG00000033031 Cip2a ENSMUST00000048374 ENSMUSP00000044714 TRANSLATION protein_coding - CCDS49867.1 1 907.0 0.0 9.51 11.5 0.0 0.0 -4,-7 1.0 10 9.0 PRINCIPAL:4 ENSMUSG00000033031 Cip2a ENSMUST00000127995 - NO_TRANSLATION retained_intron ENSMUSG00000033031 Cip2a ENSMUST00000123975 - NO_TRANSLATION retained_intron ENSMUSG00000076934 Iglv1 ENSMUST00000103746 ENSMUSP00000100462 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.25 0.0 47.3 0.0 3,-2 0.8194 - -2.0 PRINCIPAL:1 ENSMUSG00000053182 Cd200l1 ENSMUST00000144346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053182 Cd200l1 ENSMUST00000232138 ENSMUSP00000156066 TRANSLATION protein_coding - - - 187.0 0.0 0.2 0.0 0.0 2.0 -4,-6 0.0033 - 1.5 MINOR ENSMUSG00000053182 Cd200l1 ENSMUST00000114585 ENSMUSP00000110233 TRANSLATION protein_coding - CCDS28197.2 1 300.0 0.0 0.8 0.0 30.7 2.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022973 Synj1 ENSMUST00000125032 ENSMUSP00000120399 TRANSLATION protein_coding start/stop - 5 200.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 6 -2.0 MINOR ENSMUSG00000022973 Synj1 ENSMUST00000129743 ENSMUSP00000123231 TRANSLATION protein_coding start - 5 103.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000022973 Synj1 ENSMUST00000129041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022973 Synj1 ENSMUST00000156140 - NO_TRANSLATION retained_intron ENSMUSG00000022973 Synj1 ENSMUST00000231472 ENSMUSP00000156148 TRANSLATION nonsense_mediated_decay start - - 88.0 2.0 1.75 0.0 0.0 0.0 -4,-6 0.0005 4 -2.0 MINOR ENSMUSG00000022973 Synj1 ENSMUST00000170853 ENSMUSP00000128997 TRANSLATION protein_coding - CCDS49906.1 5 1309.0 2.0 13.13 2.0 469.7 0.0 -4,-6 1.0 49 11.0 PRINCIPAL:2 ENSMUSG00000022973 Synj1 ENSMUST00000121759 ENSMUSP00000113308 TRANSLATION protein_coding - CCDS49907.1 5 1607.0 2.0 13.13 1.1 469.7 0.0 -4,-6 0.5814 57 10.1 ALTERNATIVE:2 ENSMUSG00000022973 Synj1 ENSMUST00000130813 ENSMUSP00000119712 TRANSLATION protein_coding stop - 5 693.0 2.0 8.25 0.0 237.1 0.0 -4,-6 0.0007 25 -2.0 MINOR ENSMUSG00000022973 Synj1 ENSMUST00000118390 ENSMUSP00000113518 TRANSLATION protein_coding start - 5 1324.0 2.0 13.13 0.0 469.7 0.0 -4,-1 0.3451 49 -2.0 MINOR ENSMUSG00000022973 Synj1 ENSMUST00000118246 - NO_TRANSLATION retained_intron ENSMUSG00000022973 Synj1 ENSMUST00000231524 ENSMUSP00000155939 TRANSLATION protein_coding start/stop - - 242.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 7 -2.0 MINOR ENSMUSG00000022973 Synj1 ENSMUST00000154276 ENSMUSP00000122675 TRANSLATION protein_coding start - 5 189.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000022718 Dgcr8 ENSMUST00000009321 ENSMUSP00000009321 TRANSLATION protein_coding - CCDS28018.1 1 773.0 0.0 7.35 10.3 71.2 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000022718 Dgcr8 ENSMUST00000115633 - NO_TRANSLATION retained_intron ENSMUSG00000022718 Dgcr8 ENSMUST00000232476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022718 Dgcr8 ENSMUST00000232424 ENSMUSP00000155858 TRANSLATION protein_coding stop - - 141.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022718 Dgcr8 ENSMUST00000156274 - NO_TRANSLATION retained_intron ENSMUSG00000022718 Dgcr8 ENSMUST00000128856 - NO_TRANSLATION retained_intron ENSMUSG00000022718 Dgcr8 ENSMUST00000144536 - NO_TRANSLATION retained_intron ENSMUSG00000022718 Dgcr8 ENSMUST00000134431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022718 Dgcr8 ENSMUST00000232414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022718 Dgcr8 ENSMUST00000152033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052384 Nrros ENSMUST00000231836 ENSMUSP00000155965 TRANSLATION protein_coding - - - 685.0 0.0 1.965 0.0 99.2 1.0 -4,-6 0.1188 2 12.0 MINOR ENSMUSG00000052384 Nrros ENSMUST00000126869 ENSMUSP00000116388 TRANSLATION protein_coding - CCDS84220.1 1 693.0 0.0 1.54 12.6 99.2 1.0 -2,-3 1.0 3 13.704 PRINCIPAL:1 ENSMUSG00000052384 Nrros ENSMUST00000143682 ENSMUSP00000119349 TRANSLATION protein_coding - CCDS84220.1 1 693.0 0.0 1.54 12.6 99.2 1.0 -2,-3 1.0 3 13.704 PRINCIPAL:1 ENSMUSG00000052384 Nrros ENSMUST00000144345 ENSMUSP00000121492 TRANSLATION protein_coding stop - 2 80.0 0.0 0.64 0.0 0.0 0.0 -2,-3 0.0 2 -2.0 MINOR ENSMUSG00000052384 Nrros ENSMUST00000115163 ENSMUSP00000110817 TRANSLATION protein_coding - CCDS28115.1 1 721.0 0.0 1.54 0.0 99.2 1.0 -4,-5 0.1744 3 10.704 MINOR ENSMUSG00000052384 Nrros ENSMUST00000099991 ENSMUSP00000097571 TRANSLATION protein_coding - CCDS84220.1 1 693.0 0.0 1.54 12.6 99.2 1.0 -2,-3 1.0 3 13.704 PRINCIPAL:1 ENSMUSG00000052384 Nrros ENSMUST00000150250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052384 Nrros ENSMUST00000136809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052384 Nrros ENSMUST00000130410 ENSMUSP00000122290 TRANSLATION protein_coding stop - 3 144.0 0.0 1.24 0.0 0.0 0.0 -2,-3 0.0 2 -2.0 MINOR ENSMUSG00000052384 Nrros ENSMUST00000115165 ENSMUSP00000110819 TRANSLATION protein_coding - CCDS84221.1 1 669.0 0.0 1.665 0.0 99.2 1.0 -4,-5 0.3025 2 11.082 MINOR ENSMUSG00000041378 Cldn5 ENSMUST00000043577 ENSMUSP00000041925 TRANSLATION protein_coding - CCDS28026.1 - 218.0 0.0 0.8 36.2 100.1 0.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000074996 Or5ac17 ENSMUST00000214186 ENSMUSP00000150643 TRANSLATION protein_coding - CCDS28250.1 5 308.0 0.0 1.0 10.8 161.3 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074996 Or5ac17 ENSMUST00000099657 ENSMUSP00000097249 TRANSLATION protein_coding - CCDS28250.1 - 308.0 0.0 1.0 10.8 161.3 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022658 Tagln3 ENSMUST00000096057 ENSMUSP00000093762 TRANSLATION protein_coding - CCDS28200.1 1 199.0 0.0 4.0 36.9 124.6 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000062082 Cd200r4 ENSMUST00000176819 ENSMUSP00000135299 TRANSLATION protein_coding - CCDS37346.1 5 270.0 0.0 2.15 0.4 67.7 2.0 1,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000062082 Cd200r4 ENSMUST00000176321 ENSMUSP00000135162 TRANSLATION protein_coding - - 1 224.0 0.0 2.0 0.0 64.7 2.0 -3,-5 0.0234 - 6.914 ALTERNATIVE:2 ENSMUSG00000062082 Cd200r4 ENSMUST00000114626 ENSMUSP00000110273 TRANSLATION protein_coding - CCDS37346.1 1 270.0 0.0 2.15 0.4 67.7 2.0 1,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000039456 Morc3 ENSMUST00000201097 ENSMUSP00000144058 TRANSLATION protein_coding stop - 5 397.0 2.0 8.26 0.0 61.3 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000039456 Morc3 ENSMUST00000201706 - NO_TRANSLATION retained_intron ENSMUSG00000039456 Morc3 ENSMUST00000201754 ENSMUSP00000144357 TRANSLATION nonsense_mediated_decay - - 1 92.0 0.0 2.48 0.0 33.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000039456 Morc3 ENSMUST00000202663 - NO_TRANSLATION retained_intron ENSMUSG00000039456 Morc3 ENSMUST00000232425 - NO_TRANSLATION retained_intron ENSMUSG00000039456 Morc3 ENSMUST00000232639 ENSMUSP00000156167 TRANSLATION nonsense_mediated_decay start - - 58.0 2.0 1.5 0.0 34.9 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000039456 Morc3 ENSMUST00000202261 ENSMUSP00000144369 TRANSLATION protein_coding - CCDS79490.1 1 942.0 2.0 10.41 0.1 120.4 0.0 -4,-2 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000039456 Morc3 ENSMUST00000201497 - NO_TRANSLATION retained_intron ENSMUSG00000039456 Morc3 ENSMUST00000231891 - NO_TRANSLATION retained_intron ENSMUSG00000049871 Nlrc3 ENSMUST00000096308 - NO_TRANSLATION retained_intron ENSMUSG00000049871 Nlrc3 ENSMUST00000177551 ENSMUSP00000137628 TRANSLATION protein_coding - CCDS49747.1 2 1102.0 8.0 9.057 0.0 311.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000049871 Nlrc3 ENSMUST00000180200 ENSMUSP00000137325 TRANSLATION protein_coding - CCDS70677.1 1 397.0 0.0 8.475 0.0 197.2 0.0 -4,-7 0.1031 - 4.836 MINOR ENSMUSG00000049871 Nlrc3 ENSMUST00000163478 - NO_TRANSLATION retained_intron ENSMUSG00000049871 Nlrc3 ENSMUST00000229884 ENSMUSP00000155241 TRANSLATION protein_coding start - - 1199.0 8.0 6.282 0.0 248.9 0.0 -4,-7 0.0261 - -2.0 MINOR ENSMUSG00000052504 Epha3 ENSMUST00000232370 - NO_TRANSLATION retained_intron ENSMUSG00000052504 Epha3 ENSMUST00000232461 ENSMUSP00000155890 TRANSLATION protein_coding stop - - 204.0 0.0 3.35 0.0 100.1 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000052504 Epha3 ENSMUST00000064405 ENSMUSP00000066554 TRANSLATION protein_coding - CCDS28264.1 1 984.0 18.0 13.15 21.2 839.6 1.0 2,-3 1.0 5 18.0 PRINCIPAL:3 ENSMUSG00000052504 Epha3 ENSMUST00000232654 ENSMUSP00000155997 TRANSLATION protein_coding - - - 538.0 0.0 6.798 1.0 382.0 0.0 2,-3 0.0214 3 0.2 MINOR ENSMUSG00000052504 Epha3 ENSMUST00000231270 ENSMUSP00000156331 TRANSLATION nonsense_mediated_decay - - - 83.0 0.0 0.75 0.0 0.0 0.0 2,-3 0.0016 - -2.0 MINOR ENSMUSG00000052504 Epha3 ENSMUST00000232049 ENSMUSP00000155946 TRANSLATION protein_coding - - - 983.0 18.0 13.15 21.2 835.7 1.0 2,-3 0.8591 4 18.0 ALTERNATIVE:1 ENSMUSG00000054939 Zfp174 ENSMUST00000041778 ENSMUSP00000045805 TRANSLATION protein_coding - CCDS37238.1 1 407.0 12.0 1.6 9.1 189.2 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000059043 Or2c1 ENSMUST00000080917 ENSMUSP00000079720 TRANSLATION protein_coding - CCDS27910.1 - 312.0 0.0 1.0 10.7 174.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059043 Or2c1 ENSMUST00000214238 ENSMUSP00000149504 TRANSLATION protein_coding - CCDS27910.1 5 312.0 0.0 1.0 10.7 174.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059043 Or2c1 ENSMUST00000214590 ENSMUSP00000150757 TRANSLATION protein_coding - CCDS27910.1 5 312.0 0.0 1.0 10.7 174.6 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033383 Rtp1 ENSMUST00000038730 ENSMUSP00000043416 TRANSLATION protein_coding - CCDS28078.1 1 263.0 0.0 0.0 12.5 79.9 0.0 -4,-1 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000039200 Atf7ip2 ENSMUST00000133674 - NO_TRANSLATION retained_intron ENSMUSG00000039200 Atf7ip2 ENSMUST00000100191 ENSMUSP00000097766 TRANSLATION protein_coding - - 1 225.0 0.0 2.5 0.0 178.0 0.0 -4,-5 0.0316 - 6.0 MINOR ENSMUSG00000039200 Atf7ip2 ENSMUST00000230872 ENSMUSP00000155077 TRANSLATION protein_coding start - - 133.0 0.0 0.0 0.0 47.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039200 Atf7ip2 ENSMUST00000117220 ENSMUSP00000113573 TRANSLATION protein_coding - - 1 319.0 0.0 2.5 0.0 243.6 0.0 -4,-5 0.0431 - 6.0 MINOR ENSMUSG00000039200 Atf7ip2 ENSMUST00000119023 ENSMUSP00000113480 TRANSLATION protein_coding - CCDS49759.1 1 300.0 0.0 2.5 0.0 243.6 0.0 -4,-5 0.1652 - 6.0 MINOR ENSMUSG00000039200 Atf7ip2 ENSMUST00000044005 ENSMUSP00000036731 TRANSLATION protein_coding - CCDS49758.1 1 452.0 0.0 2.5 0.4 362.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000052459 Atp6v1a ENSMUST00000063661 ENSMUSP00000066886 TRANSLATION protein_coding - CCDS28182.1 1 617.0 15.0 14.01 33.2 567.3 0.0 -4,-5 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000052459 Atp6v1a ENSMUST00000147025 ENSMUSP00000118726 TRANSLATION protein_coding stop - 5 77.0 0.0 1.93 0.0 49.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000052459 Atp6v1a ENSMUST00000124102 ENSMUSP00000118429 TRANSLATION protein_coding stop - 5 196.0 0.0 4.26 0.0 171.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000052459 Atp6v1a ENSMUST00000137557 ENSMUSP00000116923 TRANSLATION protein_coding stop - 3 237.0 0.0 5.26 0.0 205.5 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000052459 Atp6v1a ENSMUST00000130036 - NO_TRANSLATION retained_intron ENSMUSG00000052459 Atp6v1a ENSMUST00000114666 ENSMUSP00000110314 TRANSLATION protein_coding - CCDS28182.1 1 617.0 15.0 14.01 33.2 567.3 0.0 -4,-5 1.0 32 22.0 PRINCIPAL:1 ENSMUSG00000022949 Clic6 ENSMUST00000162181 ENSMUSP00000124498 TRANSLATION protein_coding stop - 2 100.0 14.0 2.0 0.0 25.2 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000022949 Clic6 ENSMUST00000023670 ENSMUSP00000023670 TRANSLATION protein_coding - CCDS28338.1 1 596.0 15.0 5.0 0.3 52.9 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000022793 B4galt4 ENSMUST00000161010 - NO_TRANSLATION retained_intron ENSMUSG00000022793 B4galt4 ENSMUST00000231655 ENSMUSP00000156271 TRANSLATION protein_coding stop - - 226.0 4.0 1.0 0.0 108.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022793 B4galt4 ENSMUST00000114708 ENSMUSP00000110356 TRANSLATION protein_coding - - 2 73.0 4.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 1.332 MINOR ENSMUSG00000022793 B4galt4 ENSMUST00000232454 ENSMUSP00000155991 TRANSLATION protein_coding - - - 73.0 4.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 1.332 MINOR ENSMUSG00000022793 B4galt4 ENSMUST00000114710 ENSMUSP00000110358 TRANSLATION protein_coding - - 3 73.0 4.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 1.332 MINOR ENSMUSG00000022793 B4galt4 ENSMUST00000023482 ENSMUSP00000023482 TRANSLATION protein_coding - CCDS28173.1 1 344.0 11.0 5.5 10.7 301.5 0.0 2,-3 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000022793 B4galt4 ENSMUST00000114712 ENSMUSP00000110360 TRANSLATION protein_coding - CCDS28173.1 1 344.0 11.0 5.5 10.7 301.5 0.0 2,-3 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000022793 B4galt4 ENSMUST00000114711 ENSMUSP00000110359 TRANSLATION protein_coding - - 1 73.0 4.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 1.332 MINOR ENSMUSG00000022793 B4galt4 ENSMUST00000154902 ENSMUSP00000118593 TRANSLATION nonsense_mediated_decay - - 1 246.0 5.0 2.75 4.8 225.4 0.0 2,-3 0.1304 3 -2.0 MINOR ENSMUSG00000094430 Smbd1 ENSMUST00000179384 ENSMUSP00000137187 TRANSLATION protein_coding - CCDS57028.1 2 141.0 0.0 1.0 0.0 0.0 0.0 2,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000004843 Chmp2b ENSMUST00000231259 ENSMUSP00000156381 TRANSLATION protein_coding - - - 209.0 0.0 3.2 0.0 147.9 0.0 -4,-6 0.0562 2 12.0 MINOR ENSMUSG00000004843 Chmp2b ENSMUST00000004965 ENSMUSP00000004965 TRANSLATION protein_coding - CCDS28269.1 1 213.0 0.0 3.2 34.9 147.9 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000059280 Vpreb1b ENSMUST00000075371 ENSMUSP00000074835 TRANSLATION protein_coding - CCDS28015.1 1 142.0 0.0 1.1 0.0 80.6 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022529 Zfp263 ENSMUST00000023176 ENSMUSP00000023176 TRANSLATION protein_coding - CCDS27909.1 1 680.0 36.0 1.6 9.6 376.7 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000022529 Zfp263 ENSMUST00000159425 - NO_TRANSLATION retained_intron ENSMUSG00000022529 Zfp263 ENSMUST00000161630 ENSMUSP00000123725 TRANSLATION nonsense_mediated_decay - - 5 196.0 0.0 0.8 0.0 132.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022529 Zfp263 ENSMUST00000159469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022529 Zfp263 ENSMUST00000159060 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022529 Zfp263 ENSMUST00000162207 ENSMUSP00000124433 TRANSLATION protein_coding - - 1 392.0 36.0 0.8 0.0 218.1 0.0 -4,-5 0.0198 3 9.0 MINOR ENSMUSG00000022529 Zfp263 ENSMUST00000160923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022952 Runx1 ENSMUST00000186296 ENSMUSP00000140419 TRANSLATION protein_coding stop - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022952 Runx1 ENSMUST00000113956 ENSMUSP00000109589 TRANSLATION protein_coding - CCDS28339.1 1 387.0 0.0 3.2 0.0 377.5 0.0 -4,-2 0.1558 7 11.67 MINOR ENSMUSG00000022952 Runx1 ENSMUST00000023673 ENSMUSP00000023673 TRANSLATION protein_coding - CCDS49917.1 1 465.0 0.0 3.32 8.6 379.0 0.0 -4,-6 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000022952 Runx1 ENSMUST00000187242 ENSMUSP00000139819 TRANSLATION protein_coding start - 5 63.0 0.0 1.0 0.0 114.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022952 Runx1 ENSMUST00000189679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022952 Runx1 ENSMUST00000168195 ENSMUSP00000131079 TRANSLATION protein_coding - CCDS49916.1 1 451.0 0.0 3.32 4.4 379.0 0.0 -4,-2 0.7885 9 13.341 MINOR ENSMUSG00000022952 Runx1 ENSMUST00000189126 - NO_TRANSLATION retained_intron ENSMUSG00000044626 Liph ENSMUST00000232673 - NO_TRANSLATION retained_intron ENSMUSG00000044626 Liph ENSMUST00000231682 ENSMUSP00000155902 TRANSLATION nonsense_mediated_decay - - - 146.0 1.0 1.265 0.0 60.5 0.0 2,-4 0.0017 - -2.0 MINOR ENSMUSG00000044626 Liph ENSMUST00000060673 ENSMUSP00000062310 TRANSLATION protein_coding - CCDS37296.1 1 451.0 7.0 8.6 10.5 267.6 0.0 2,-4 1.0 5 15.0 PRINCIPAL:4 ENSMUSG00000044626 Liph ENSMUST00000074230 ENSMUSP00000073853 TRANSLATION protein_coding - CCDS37295.1 1 421.0 7.0 7.85 2.1 168.3 0.0 2,-4 0.0813 4 10.848 MINOR ENSMUSG00000044626 Liph ENSMUST00000232120 - NO_TRANSLATION retained_intron ENSMUSG00000044626 Liph ENSMUST00000231766 ENSMUSP00000156378 TRANSLATION protein_coding - - - 449.0 7.0 8.6 10.5 263.2 0.0 2,-4 0.8182 5 15.0 ALTERNATIVE:1 ENSMUSG00000074892 B3galt5 ENSMUST00000153586 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074892 B3galt5 ENSMUST00000099497 ENSMUSP00000097096 TRANSLATION protein_coding - CCDS28356.1 1 308.0 0.0 1.0 9.9 197.3 0.0 0,-4 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000074892 B3galt5 ENSMUST00000134058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074892 B3galt5 ENSMUST00000113800 ENSMUSP00000109431 TRANSLATION protein_coding - CCDS28356.1 1 308.0 0.0 1.0 9.9 197.3 0.0 0,-4 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000022681 Ntan1 ENSMUST00000123849 - NO_TRANSLATION retained_intron ENSMUSG00000022681 Ntan1 ENSMUST00000139161 - NO_TRANSLATION retained_intron ENSMUSG00000022681 Ntan1 ENSMUST00000136618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022681 Ntan1 ENSMUST00000124604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022681 Ntan1 ENSMUST00000141791 - NO_TRANSLATION retained_intron ENSMUSG00000022681 Ntan1 ENSMUST00000023362 ENSMUSP00000023362 TRANSLATION protein_coding - CCDS27969.1 1 310.0 0.0 8.25 21.3 401.0 0.0 -4,-2 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000022681 Ntan1 ENSMUST00000145248 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022681 Ntan1 ENSMUST00000230788 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022681 Ntan1 ENSMUST00000115805 ENSMUSP00000111472 TRANSLATION protein_coding - - 3 272.0 0.0 7.25 0.3 319.4 0.0 -4,-2 0.0017 7 5.106 MINOR ENSMUSG00000022811 Zfp148 ENSMUST00000165418 ENSMUSP00000126338 TRANSLATION protein_coding - CCDS28130.1 1 794.0 15.0 2.63 19.8 57.8 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000022811 Zfp148 ENSMUST00000231732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022811 Zfp148 ENSMUST00000089677 ENSMUSP00000087106 TRANSLATION protein_coding - CCDS28130.1 1 794.0 15.0 2.63 19.8 57.8 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000022811 Zfp148 ENSMUST00000231894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022811 Zfp148 ENSMUST00000232023 ENSMUSP00000156030 TRANSLATION protein_coding - - - 752.0 15.0 2.63 6.0 57.8 0.0 -4,-5 0.3486 13 19.064 MINOR ENSMUSG00000022698 Naa50 ENSMUST00000161326 ENSMUSP00000124291 TRANSLATION protein_coding - CCDS84236.1 1 169.0 22.0 3.75 30.0 52.7 0.0 -4,-5 0.9867 13 15.736 ALTERNATIVE:1 ENSMUSG00000022698 Naa50 ENSMUST00000063542 ENSMUSP00000067361 TRANSLATION protein_coding - - 1 129.0 16.0 2.75 0.0 29.2 0.0 -4,-5 0.0 11 5.736 MINOR ENSMUSG00000022698 Naa50 ENSMUST00000159514 ENSMUSP00000125517 TRANSLATION protein_coding - - 1 175.0 22.0 3.882 0.0 52.7 0.0 -4,-5 0.0426 13 12.0 MINOR ENSMUSG00000022698 Naa50 ENSMUST00000063520 ENSMUSP00000070140 TRANSLATION protein_coding - CCDS28183.1 1 168.0 22.0 3.75 30.0 52.7 0.0 -4,-5 1.0 13 15.736 PRINCIPAL:4 ENSMUSG00000022671 Mzt2 ENSMUST00000229680 ENSMUSP00000155739 TRANSLATION protein_coding - - - 152.0 0.0 1.6 0.0 137.0 0.0 -1,-4 0.0945 1 8.0 ALTERNATIVE:2 ENSMUSG00000022671 Mzt2 ENSMUST00000117136 ENSMUSP00000113832 TRANSLATION protein_coding - CCDS27979.1 1 159.0 0.0 1.6 2.0 137.0 0.0 -1,-4 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000022671 Mzt2 ENSMUST00000023351 ENSMUSP00000023351 TRANSLATION protein_coding - CCDS27979.1 1 159.0 0.0 1.6 2.0 137.0 0.0 -1,-4 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000022671 Mzt2 ENSMUST00000137864 - NO_TRANSLATION retained_intron ENSMUSG00000051669 AU021092 ENSMUST00000050160 ENSMUSP00000058860 TRANSLATION protein_coding - CCDS27934.1 1 385.0 0.0 5.6 0.0 327.8 0.0 2,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000096695 Or5h26 ENSMUST00000205471 ENSMUSP00000145684 TRANSLATION protein_coding - CCDS28248.1 3 309.0 0.0 1.0 10.4 161.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096695 Or5h26 ENSMUST00000077027 ENSMUSP00000076285 TRANSLATION protein_coding - CCDS28248.1 - 309.0 0.0 1.0 10.4 161.7 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068428 Gmnc ENSMUST00000231969 ENSMUSP00000156070 TRANSLATION protein_coding - - - 333.0 0.0 1.75 8.0 0.0 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000068428 Gmnc ENSMUST00000089832 ENSMUSP00000087269 TRANSLATION protein_coding - CCDS37304.1 1 339.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.3304 - 6.0 MINOR ENSMUSG00000068428 Gmnc ENSMUST00000231299 ENSMUSP00000156264 TRANSLATION protein_coding - - - 291.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0402 - 6.0 MINOR ENSMUSG00000068428 Gmnc ENSMUST00000231417 ENSMUSP00000155982 TRANSLATION nonsense_mediated_decay start - - 110.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0383 - -2.0 MINOR ENSMUSG00000025616 Usp16 ENSMUST00000135399 - NO_TRANSLATION retained_intron ENSMUSG00000025616 Usp16 ENSMUST00000144886 - NO_TRANSLATION retained_intron ENSMUSG00000025616 Usp16 ENSMUST00000149656 - NO_TRANSLATION retained_intron ENSMUSG00000025616 Usp16 ENSMUST00000131206 - NO_TRANSLATION retained_intron ENSMUSG00000025616 Usp16 ENSMUST00000177275 - NO_TRANSLATION retained_intron ENSMUSG00000025616 Usp16 ENSMUST00000119504 ENSMUSP00000114058 TRANSLATION protein_coding - - 5 754.0 12.0 7.984 0.0 188.8 0.0 -4,-6 0.0046 10 11.496 MINOR ENSMUSG00000025616 Usp16 ENSMUST00000144759 ENSMUSP00000116323 TRANSLATION nonsense_mediated_decay - - 5 334.0 12.0 5.6 0.0 154.1 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000025616 Usp16 ENSMUST00000177538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025616 Usp16 ENSMUST00000026710 ENSMUSP00000026710 TRANSLATION protein_coding - CCDS28291.1 1 825.0 12.0 9.334 11.0 252.2 0.0 -4,-6 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000025616 Usp16 ENSMUST00000146386 - NO_TRANSLATION retained_intron ENSMUSG00000025616 Usp16 ENSMUST00000131356 ENSMUSP00000122384 TRANSLATION protein_coding stop - 3 48.0 2.0 0.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000039568 Ubald1 ENSMUST00000143873 - NO_TRANSLATION retained_intron ENSMUSG00000039568 Ubald1 ENSMUST00000037843 ENSMUSP00000037809 TRANSLATION protein_coding - CCDS49750.1 1 176.0 0.0 1.75 9.8 32.6 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000022762 Ncam2 ENSMUST00000231687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022762 Ncam2 ENSMUST00000232550 - NO_TRANSLATION retained_intron ENSMUSG00000022762 Ncam2 ENSMUST00000037785 ENSMUSP00000049390 TRANSLATION protein_coding - CCDS28281.1 1 727.0 0.0 13.75 0.1 384.1 0.0 3,-2 0.4836 23 8.0 ALTERNATIVE:2 ENSMUSG00000022762 Ncam2 ENSMUST00000067602 ENSMUSP00000063468 TRANSLATION protein_coding - CCDS49888.1 1 837.0 0.0 13.75 0.1 384.1 0.0 3,-2 1.0 27 8.0 PRINCIPAL:2 ENSMUSG00000060691 Krtap19-1 ENSMUST00000081334 ENSMUSP00000132718 TRANSLATION protein_coding - CCDS49894.1 - 87.0 0.0 0.0 0.0 44.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045331 2310079G19Rik ENSMUST00000052337 ENSMUSP00000058969 TRANSLATION protein_coding - CCDS49891.1 - 185.0 0.0 0.0 0.4 172.3 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068196 Col8a1 ENSMUST00000232382 - NO_TRANSLATION retained_intron ENSMUSG00000068196 Col8a1 ENSMUST00000089332 ENSMUSP00000086745 TRANSLATION protein_coding - CCDS37367.1 1 744.0 3.0 0.4 6.6 192.4 0.0 1,-3 1.0 1 17.0 PRINCIPAL:1 ENSMUSG00000048490 Nrip1 ENSMUST00000054178 ENSMUSP00000051726 TRANSLATION protein_coding - CCDS28274.1 1 1161.0 0.0 0.0 8.5 1499.1 0.0 -4,-5 1.0 14 9.0 PRINCIPAL:1 ENSMUSG00000048490 Nrip1 ENSMUST00000145649 - NO_TRANSLATION retained_intron ENSMUSG00000048490 Nrip1 ENSMUST00000141182 - NO_TRANSLATION retained_intron ENSMUSG00000048490 Nrip1 ENSMUST00000231585 ENSMUSP00000156377 TRANSLATION protein_coding stop - - 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048490 Nrip1 ENSMUST00000140483 ENSMUSP00000123638 TRANSLATION protein_coding stop - 3 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0219 - -2.0 MINOR ENSMUSG00000048490 Nrip1 ENSMUST00000231304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048490 Nrip1 ENSMUST00000121927 ENSMUSP00000112959 TRANSLATION protein_coding - CCDS28274.1 1 1161.0 0.0 0.0 8.5 1499.1 0.0 -4,-5 1.0 14 9.0 PRINCIPAL:1 ENSMUSG00000048490 Nrip1 ENSMUST00000128871 - NO_TRANSLATION retained_intron ENSMUSG00000039427 Alg1 ENSMUST00000153730 - NO_TRANSLATION retained_intron ENSMUSG00000039427 Alg1 ENSMUST00000100196 ENSMUSP00000097770 TRANSLATION protein_coding - CCDS49753.1 1 482.0 0.0 11.75 0.0 44.5 0.0 1,-3 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000039427 Alg1 ENSMUST00000147530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039427 Alg1 ENSMUST00000142902 - NO_TRANSLATION retained_intron ENSMUSG00000039427 Alg1 ENSMUST00000049207 ENSMUSP00000046534 TRANSLATION protein_coding - - 2 456.0 0.0 11.0 0.0 44.5 0.0 1,-3 0.1227 5 10.5 MINOR ENSMUSG00000003233 Dvl3 ENSMUST00000003318 ENSMUSP00000003318 TRANSLATION protein_coding - CCDS37287.1 1 716.0 0.0 6.85 11.7 703.9 0.0 -4,-5 1.0 2 11.0 PRINCIPAL:4 ENSMUSG00000003233 Dvl3 ENSMUST00000169552 - NO_TRANSLATION retained_intron ENSMUSG00000003233 Dvl3 ENSMUST00000171572 ENSMUSP00000130925 TRANSLATION protein_coding - CCDS84210.1 1 718.0 0.0 6.85 8.0 703.9 0.0 -4,-5 0.9393 2 9.962 ALTERNATIVE:1 ENSMUSG00000003233 Dvl3 ENSMUST00000171774 ENSMUSP00000126082 TRANSLATION protein_coding - - 5 699.0 0.0 6.85 0.0 703.9 0.0 -4,-5 0.1852 2 8.0 MINOR ENSMUSG00000068617 Clxn ENSMUST00000229121 ENSMUSP00000155692 TRANSLATION nonsense_mediated_decay - - - 195.0 15.0 3.695 2.7 72.3 0.0 -4,-5 0.1373 - -2.0 MINOR ENSMUSG00000068617 Clxn ENSMUST00000228998 ENSMUSP00000155377 TRANSLATION nonsense_mediated_decay - - - 169.0 9.0 2.893 0.3 55.7 0.0 -4,-5 0.0017 - -2.0 MINOR ENSMUSG00000068617 Clxn ENSMUST00000090277 ENSMUSP00000087744 TRANSLATION protein_coding - CCDS27975.1 1 212.0 15.0 3.895 13.4 72.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000068617 Clxn ENSMUST00000229825 ENSMUSP00000155853 TRANSLATION nonsense_mediated_decay - - - 107.0 4.0 1.695 1.0 27.0 0.0 -4,-5 0.0103 - -2.0 MINOR ENSMUSG00000035638 Muc20 ENSMUST00000041123 ENSMUSP00000041221 TRANSLATION protein_coding - CCDS49830.1 1 656.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.4824 - 0.0 ALTERNATIVE:2 ENSMUSG00000035638 Muc20 ENSMUST00000115116 ENSMUSP00000110769 TRANSLATION protein_coding - CCDS49829.1 1 688.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.9854 - 0.0 PRINCIPAL:2 ENSMUSG00000090356 Teddm3 ENSMUST00000170665 ENSMUSP00000141078 TRANSLATION protein_coding - CCDS79440.1 - 294.0 0.0 0.5 0.0 55.4 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000050742 Or2m12 ENSMUST00000216157 ENSMUSP00000149971 TRANSLATION protein_coding - CCDS28032.1 5 315.0 0.0 1.0 3.4 166.7 7.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000050742 Or2m12 ENSMUST00000056727 ENSMUSP00000056970 TRANSLATION protein_coding - CCDS28032.1 - 315.0 0.0 1.0 3.4 166.7 7.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022801 Lrch3 ENSMUST00000142290 ENSMUSP00000117302 TRANSLATION protein_coding start/stop - 5 253.0 0.0 0.638 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000022801 Lrch3 ENSMUST00000165826 ENSMUSP00000126308 TRANSLATION protein_coding start/stop - 5 249.0 0.0 0.04 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000022801 Lrch3 ENSMUST00000133399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022801 Lrch3 ENSMUST00000170899 ENSMUSP00000127547 TRANSLATION protein_coding - CCDS79451.1 1 692.0 0.0 5.388 0.0 102.2 0.0 -2,-5 0.1798 14 8.0 ALTERNATIVE:2 ENSMUSG00000022801 Lrch3 ENSMUST00000170201 ENSMUSP00000126964 TRANSLATION protein_coding - CCDS79450.1 1 742.0 0.0 5.388 0.0 102.2 0.0 -2,-5 0.2334 14 8.0 ALTERNATIVE:2 ENSMUSG00000022801 Lrch3 ENSMUST00000165616 ENSMUSP00000130009 TRANSLATION protein_coding - - 5 624.0 0.0 2.988 0.0 38.6 0.0 -2,-5 0.0 11 1.2 MINOR ENSMUSG00000022801 Lrch3 ENSMUST00000135193 ENSMUSP00000130708 TRANSLATION protein_coding - CCDS84225.1 5 796.0 0.0 5.188 1.1 110.1 0.0 -2,-5 1.0 13 8.598 PRINCIPAL:2 ENSMUSG00000022801 Lrch3 ENSMUST00000023491 ENSMUSP00000023491 TRANSLATION protein_coding - CCDS37315.1 1 778.0 0.0 5.388 0.0 102.2 0.0 -2,-5 0.354 14 8.0 ALTERNATIVE:2 ENSMUSG00000022801 Lrch3 ENSMUST00000163428 ENSMUSP00000133034 TRANSLATION protein_coding start/stop - 3 265.0 0.0 0.638 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000022801 Lrch3 ENSMUST00000156928 - NO_TRANSLATION retained_intron ENSMUSG00000022801 Lrch3 ENSMUST00000164486 ENSMUSP00000131416 TRANSLATION nonsense_mediated_decay - - 3 92.0 0.0 0.2 0.0 0.0 0.0 -2,-5 0.0 2 -2.0 MINOR ENSMUSG00000022710 Usp7 ENSMUST00000160326 ENSMUSP00000124576 TRANSLATION nonsense_mediated_decay - - 1 92.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022710 Usp7 ENSMUST00000172505 ENSMUSP00000133398 TRANSLATION nonsense_mediated_decay start - 5 327.0 0.0 7.4 0.0 133.7 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000022710 Usp7 ENSMUST00000161046 ENSMUSP00000124093 TRANSLATION protein_coding - CCDS49755.1 1 1103.0 0.0 28.88 17.8 683.6 0.0 -4,-5 1.0 30 16.0 PRINCIPAL:1 ENSMUSG00000022710 Usp7 ENSMUST00000162445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022710 Usp7 ENSMUST00000159287 - NO_TRANSLATION retained_intron ENSMUSG00000022710 Usp7 ENSMUST00000159503 - NO_TRANSLATION retained_intron ENSMUSG00000022710 Usp7 ENSMUST00000159509 - NO_TRANSLATION retained_intron ENSMUSG00000022710 Usp7 ENSMUST00000173939 - NO_TRANSLATION retained_intron ENSMUSG00000022710 Usp7 ENSMUST00000160405 ENSMUSP00000124382 TRANSLATION protein_coding - - 5 1143.0 0.0 28.88 0.0 683.6 0.0 -4,-2 0.2608 30 12.0 MINOR ENSMUSG00000022710 Usp7 ENSMUST00000162929 - NO_TRANSLATION retained_intron ENSMUSG00000022710 Usp7 ENSMUST00000159281 - NO_TRANSLATION retained_intron ENSMUSG00000022710 Usp7 ENSMUST00000162141 - NO_TRANSLATION retained_intron ENSMUSG00000022710 Usp7 ENSMUST00000159387 - NO_TRANSLATION retained_intron ENSMUSG00000068071 Gm6358 ENSMUST00000089101 ENSMUSP00000086502 TRANSLATION protein_coding - - - 51.0 0.0 0.0 0.0 30.3 0.0 -4,-5 0.0374 - 0.0 ALTERNATIVE:2 ENSMUSG00000068071 Gm6358 ENSMUST00000187643 ENSMUSP00000139779 TRANSLATION protein_coding - - - 74.0 0.0 0.0 0.0 30.3 0.0 -4,-6 0.6842 - 0.0 PRINCIPAL:2 ENSMUSG00000048939 Atp13a5 ENSMUST00000142681 ENSMUSP00000118627 TRANSLATION nonsense_mediated_decay - - 1 949.0 3.0 8.659 0.0 285.9 7.0 -4,-5 0.0825 7 -2.0 MINOR ENSMUSG00000048939 Atp13a5 ENSMUST00000075806 ENSMUSP00000075204 TRANSLATION protein_coding - CCDS28095.1 1 1216.0 3.0 9.099 7.1 285.9 12.0 -4,-5 1.0 7 17.0 PRINCIPAL:1 ENSMUSG00000048939 Atp13a5 ENSMUST00000143373 ENSMUSP00000121208 TRANSLATION protein_coding - CCDS70705.1 1 1171.0 3.0 8.599 0.7 255.0 10.0 -4,-5 0.1787 7 12.144 MINOR ENSMUSG00000048939 Atp13a5 ENSMUST00000152040 ENSMUSP00000114703 TRANSLATION protein_coding stop - 3 227.0 0.0 0.939 0.0 126.6 2.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000003531 Dgcr6 ENSMUST00000076757 ENSMUSP00000076044 TRANSLATION protein_coding - CCDS28016.1 5 170.0 0.0 3.75 0.0 274.9 0.0 -4,-7 0.0061 1 4.002 MINOR ENSMUSG00000003531 Dgcr6 ENSMUST00000148521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003531 Dgcr6 ENSMUST00000066027 ENSMUSP00000067682 TRANSLATION protein_coding - CCDS79432.1 2 201.0 0.0 4.75 18.5 311.5 0.0 -4,-5 0.9791 1 12.0 ALTERNATIVE:1 ENSMUSG00000003531 Dgcr6 ENSMUST00000153123 ENSMUSP00000118954 TRANSLATION protein_coding start - 1 119.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000003531 Dgcr6 ENSMUST00000143343 ENSMUSP00000123029 TRANSLATION protein_coding - CCDS28016.1 1 170.0 0.0 3.75 0.0 274.9 0.0 -4,-7 0.0061 1 4.002 MINOR ENSMUSG00000003531 Dgcr6 ENSMUST00000151266 ENSMUSP00000122572 TRANSLATION protein_coding - CCDS79433.1 1 198.0 0.0 4.75 18.5 318.2 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000003531 Dgcr6 ENSMUST00000148372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003531 Dgcr6 ENSMUST00000155387 ENSMUSP00000123053 TRANSLATION protein_coding - - 3 233.0 0.0 3.75 0.0 297.0 0.0 -4,-5 0.0052 1 4.002 MINOR ENSMUSG00000039789 Zfp597 ENSMUST00000175990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039789 Zfp597 ENSMUST00000090522 ENSMUSP00000088009 TRANSLATION protein_coding - CCDS27911.1 1 419.0 28.0 0.64 3.2 164.2 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000039789 Zfp597 ENSMUST00000119599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039789 Zfp597 ENSMUST00000130254 - NO_TRANSLATION retained_intron ENSMUSG00000039789 Zfp597 ENSMUST00000138857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022537 Tmem44 ENSMUST00000089775 ENSMUSP00000087207 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0322 - -2.0 MINOR ENSMUSG00000022537 Tmem44 ENSMUST00000125260 - NO_TRANSLATION retained_intron ENSMUSG00000022537 Tmem44 ENSMUST00000144001 ENSMUSP00000119318 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0322 - -2.0 MINOR ENSMUSG00000022537 Tmem44 ENSMUST00000125559 - NO_TRANSLATION retained_intron ENSMUSG00000022537 Tmem44 ENSMUST00000232166 - NO_TRANSLATION retained_intron ENSMUSG00000022537 Tmem44 ENSMUST00000140402 ENSMUSP00000123494 TRANSLATION protein_coding - CCDS37310.1 1 433.0 0.0 0.0 2.4 0.0 9.0 -4,-7 1.0 2 1.0 PRINCIPAL:1 ENSMUSG00000022537 Tmem44 ENSMUST00000153380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022537 Tmem44 ENSMUST00000144491 - NO_TRANSLATION retained_intron ENSMUSG00000022537 Tmem44 ENSMUST00000149110 ENSMUSP00000116531 TRANSLATION nonsense_mediated_decay start - 1 211.0 0.0 0.0 0.0 0.0 3.0 0,-3 0.0972 2 -2.0 MINOR ENSMUSG00000071669 Snx29 ENSMUST00000180792 ENSMUSP00000138025 TRANSLATION protein_coding - CCDS27963.2 5 818.0 0.0 4.225 7.5 155.2 0.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000071669 Snx29 ENSMUST00000115814 ENSMUSP00000111481 TRANSLATION protein_coding - - 5 374.0 0.0 2.65 0.0 87.0 0.0 -4,-7 0.0003 6 4.758 MINOR ENSMUSG00000071669 Snx29 ENSMUST00000134941 - NO_TRANSLATION retained_intron ENSMUSG00000071669 Snx29 ENSMUST00000096273 ENSMUSP00000093993 TRANSLATION protein_coding - CCDS79422.1 1 476.0 0.0 1.575 0.1 68.2 0.0 -4,-5 0.0121 4 1.482 MINOR ENSMUSG00000071669 Snx29 ENSMUST00000122168 ENSMUSP00000113595 TRANSLATION protein_coding - - 5 350.0 0.0 0.375 0.0 0.0 0.0 -1,1 0.0004 2 0.0 MINOR ENSMUSG00000071669 Snx29 ENSMUST00000150993 ENSMUSP00000117896 TRANSLATION protein_coding start - 1 249.0 0.0 0.375 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000071669 Snx29 ENSMUST00000151478 - NO_TRANSLATION retained_intron ENSMUSG00000022906 Parp9 ENSMUST00000128878 - NO_TRANSLATION retained_intron ENSMUSG00000022906 Parp9 ENSMUST00000153066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022906 Parp9 ENSMUST00000114878 ENSMUSP00000110528 TRANSLATION protein_coding - CCDS37326.1 1 830.0 25.0 5.086 0.1 161.1 0.0 -4,-5 1.0 24 18.0 PRINCIPAL:1 ENSMUSG00000022906 Parp9 ENSMUST00000114877 - NO_TRANSLATION retained_intron ENSMUSG00000022906 Parp9 ENSMUST00000023622 ENSMUSP00000023622 TRANSLATION protein_coding - - 1 597.0 18.0 4.486 0.0 56.9 0.0 -4,-5 0.0008 17 6.132 MINOR ENSMUSG00000022906 Parp9 ENSMUST00000122870 ENSMUSP00000123736 TRANSLATION nonsense_mediated_decay - - 3 58.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000022906 Parp9 ENSMUST00000159160 ENSMUSP00000124098 TRANSLATION nonsense_mediated_decay start - 3 104.0 10.0 1.75 0.0 25.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000022742 Cpox ENSMUST00000231492 - NO_TRANSLATION retained_intron ENSMUSG00000022742 Cpox ENSMUST00000232532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022742 Cpox ENSMUST00000060077 ENSMUSP00000055455 TRANSLATION protein_coding - CCDS49878.1 1 443.0 0.0 6.35 7.2 464.8 0.0 -4,-1 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000022742 Cpox ENSMUST00000231276 - NO_TRANSLATION retained_intron ENSMUSG00000022742 Cpox ENSMUST00000231342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022742 Cpox ENSMUST00000232176 - NO_TRANSLATION retained_intron ENSMUSG00000068075 Gm10229 ENSMUST00000089106 ENSMUSP00000086507 TRANSLATION protein_coding - CCDS49897.1 - 77.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000002847 Pla1a ENSMUST00000232224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002847 Pla1a ENSMUST00000002926 ENSMUSP00000002926 TRANSLATION protein_coding - CCDS28166.1 1 456.0 7.0 5.55 10.3 362.5 0.0 2,-2 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000022899 Slc15a2 ENSMUST00000167909 - NO_TRANSLATION retained_intron ENSMUSG00000022899 Slc15a2 ENSMUST00000164579 ENSMUSP00000132029 TRANSLATION protein_coding - CCDS49842.1 1 259.0 0.0 5.95 0.0 151.7 11.0 -4,-7 0.0136 2 0.0 MINOR ENSMUSG00000022899 Slc15a2 ENSMUST00000167941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022899 Slc15a2 ENSMUST00000172382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022899 Slc15a2 ENSMUST00000163964 - NO_TRANSLATION retained_intron ENSMUSG00000022899 Slc15a2 ENSMUST00000165531 ENSMUSP00000132663 TRANSLATION protein_coding - - 5 709.0 0.0 17.41 0.0 414.7 15.0 -4,-7 0.0461 5 8.286 MINOR ENSMUSG00000022899 Slc15a2 ENSMUST00000100308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022899 Slc15a2 ENSMUST00000169644 - NO_TRANSLATION retained_intron ENSMUSG00000022899 Slc15a2 ENSMUST00000166399 - NO_TRANSLATION retained_intron ENSMUSG00000022899 Slc15a2 ENSMUST00000023616 ENSMUSP00000023616 TRANSLATION protein_coding - CCDS28156.1 1 740.0 0.0 18.41 5.6 443.3 18.0 -4,-7 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000022899 Slc15a2 ENSMUST00000165380 ENSMUSP00000131395 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022899 Slc15a2 ENSMUST00000163471 - NO_TRANSLATION retained_intron ENSMUSG00000022899 Slc15a2 ENSMUST00000164770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022899 Slc15a2 ENSMUST00000168279 ENSMUSP00000132885 TRANSLATION protein_coding - - 3 189.0 0.0 4.0 0.0 72.3 7.0 -4,-5 0.0022 2 0.0 MINOR ENSMUSG00000022772 Senp5 ENSMUST00000144320 - NO_TRANSLATION retained_intron ENSMUSG00000022772 Senp5 ENSMUST00000155515 ENSMUSP00000117481 TRANSLATION nonsense_mediated_decay start - 3 210.0 1.0 3.25 0.0 27.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022772 Senp5 ENSMUST00000129900 ENSMUSP00000115257 TRANSLATION protein_coding start - 1 607.0 1.0 3.3 0.0 26.7 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000022772 Senp5 ENSMUST00000023457 ENSMUSP00000023457 TRANSLATION protein_coding - CCDS28111.1 1 749.0 5.0 6.5 8.0 145.0 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000022772 Senp5 ENSMUST00000231360 ENSMUSP00000156109 TRANSLATION protein_coding - CCDS28111.1 - 749.0 5.0 6.5 8.0 145.0 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000036292 Gramd1c ENSMUST00000036174 ENSMUSP00000036739 TRANSLATION protein_coding - CCDS28181.1 1 457.0 0.0 4.5 7.7 122.2 1.0 -4,-5 0.6014 6 5.534 MINOR ENSMUSG00000036292 Gramd1c ENSMUST00000214098 ENSMUSP00000150056 TRANSLATION protein_coding - - 5 662.0 0.0 5.995 6.8 213.5 1.0 -4,-5 1.0 6 13.732 PRINCIPAL:1 ENSMUSG00000036292 Gramd1c ENSMUST00000214764 - NO_TRANSLATION retained_intron ENSMUSG00000036292 Gramd1c ENSMUST00000179565 ENSMUSP00000137426 TRANSLATION protein_coding - CCDS28181.1 5 457.0 0.0 4.5 7.7 122.2 1.0 -4,-5 0.6014 6 5.534 MINOR ENSMUSG00000036292 Gramd1c ENSMUST00000216149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036292 Gramd1c ENSMUST00000114677 ENSMUSP00000110325 TRANSLATION protein_coding - CCDS28181.1 1 457.0 0.0 4.5 7.7 122.2 1.0 -4,-5 0.6014 6 5.534 MINOR ENSMUSG00000022951 Rcan1 ENSMUST00000231410 ENSMUSP00000156110 TRANSLATION protein_coding - - - 118.0 0.0 1.93 5.0 141.5 0.0 -4,-6 0.072 - 4.88 MINOR ENSMUSG00000022951 Rcan1 ENSMUST00000231813 ENSMUSP00000156351 TRANSLATION nonsense_mediated_decay start - - 59.0 0.0 0.6 0.0 43.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022951 Rcan1 ENSMUST00000232197 ENSMUSP00000155863 TRANSLATION protein_coding - - - 118.0 0.0 1.93 5.0 141.5 0.0 -4,-6 0.072 - 4.88 MINOR ENSMUSG00000022951 Rcan1 ENSMUST00000232239 ENSMUSP00000156053 TRANSLATION protein_coding - - - 198.0 0.0 3.68 0.0 210.8 0.0 -4,-5 0.3768 3 12.0 MINOR ENSMUSG00000022951 Rcan1 ENSMUST00000060005 ENSMUSP00000060394 TRANSLATION protein_coding - CCDS37405.1 1 251.0 0.0 3.68 6.4 210.8 0.0 -4,-5 0.3895 3 12.724 MINOR ENSMUSG00000022951 Rcan1 ENSMUST00000023672 ENSMUSP00000023672 TRANSLATION protein_coding - CCDS28337.1 1 198.0 0.0 3.68 30.8 208.6 0.0 -4,-7 1.0 2 15.868 PRINCIPAL:1 ENSMUSG00000022951 Rcan1 ENSMUST00000232457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022798 Tex55 ENSMUST00000122078 ENSMUSP00000113120 TRANSLATION protein_coding - CCDS49850.1 1 381.0 0.0 2.05 0.0 0.0 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000022798 Tex55 ENSMUST00000130241 - NO_TRANSLATION retained_intron ENSMUSG00000043065 Spice1 ENSMUST00000135340 - NO_TRANSLATION retained_intron ENSMUSG00000043065 Spice1 ENSMUST00000152425 - NO_TRANSLATION retained_intron ENSMUSG00000043065 Spice1 ENSMUST00000155661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043065 Spice1 ENSMUST00000145663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043065 Spice1 ENSMUST00000050897 ENSMUSP00000058832 TRANSLATION protein_coding - CCDS37345.1 1 860.0 0.0 0.0 4.1 493.9 0.0 -4,-6 1.0 15 8.0 PRINCIPAL:1 ENSMUSG00000043065 Spice1 ENSMUST00000133168 - NO_TRANSLATION retained_intron ENSMUSG00000043065 Spice1 ENSMUST00000126228 - NO_TRANSLATION retained_intron ENSMUSG00000043065 Spice1 ENSMUST00000132663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050158 Or2m13 ENSMUST00000206410 ENSMUSP00000146100 TRANSLATION protein_coding - CCDS28033.1 - 313.0 0.0 1.0 8.9 162.2 7.0 -4,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000050158 Or2m13 ENSMUST00000206110 ENSMUSP00000145668 TRANSLATION protein_coding - - 3 312.0 0.0 1.0 8.9 162.2 7.0 -4,-5 0.8799 - 11.0 ALTERNATIVE:1 ENSMUSG00000050158 Or2m13 ENSMUST00000052516 ENSMUSP00000062079 TRANSLATION protein_coding - - - 312.0 0.0 1.0 8.9 162.2 7.0 -4,-5 0.8799 - 11.0 ALTERNATIVE:1 ENSMUSG00000035764 Fbxo45 ENSMUST00000042732 ENSMUSP00000040168 TRANSLATION protein_coding - CCDS28117.1 1 286.0 0.0 3.0 0.0 112.3 0.0 -4,-6 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000049916 2610318N02Rik ENSMUST00000232615 - NO_TRANSLATION retained_intron ENSMUSG00000049916 2610318N02Rik ENSMUST00000231681 ENSMUSP00000156313 TRANSLATION protein_coding - CCDS37269.1 - 305.0 0.0 0.0 4.9 0.0 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000049916 2610318N02Rik ENSMUST00000231303 - NO_TRANSLATION retained_intron ENSMUSG00000049916 2610318N02Rik ENSMUST00000231630 - NO_TRANSLATION retained_intron ENSMUSG00000049916 2610318N02Rik ENSMUST00000093336 ENSMUSP00000091026 TRANSLATION protein_coding - CCDS37269.1 1 305.0 0.0 0.0 4.9 0.0 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000049916 2610318N02Rik ENSMUST00000231558 ENSMUSP00000156373 TRANSLATION protein_coding stop - - 232.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0268 - -2.0 MINOR ENSMUSG00000049916 2610318N02Rik ENSMUST00000231297 ENSMUSP00000156078 TRANSLATION protein_coding stop - - 207.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0222 - -2.0 MINOR ENSMUSG00000049916 2610318N02Rik ENSMUST00000232601 - NO_TRANSLATION retained_intron ENSMUSG00000041079 Rwdd2b ENSMUST00000039101 ENSMUSP00000049168 TRANSLATION protein_coding - CCDS37383.1 1 290.0 0.0 2.35 19.5 122.2 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000041079 Rwdd2b ENSMUST00000231843 - NO_TRANSLATION retained_intron ENSMUSG00000041079 Rwdd2b ENSMUST00000152430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032948 Lipi ENSMUST00000186809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032948 Lipi ENSMUST00000062721 ENSMUSP00000053447 TRANSLATION protein_coding - CCDS28272.2 1 476.0 8.0 6.1 0.4 272.0 0.0 1,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000105231 Iglj3 ENSMUST00000200211 ENSMUSP00000142359 TRANSLATION IG_J_gene start/stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000022760 Thap7 ENSMUST00000231676 - NO_TRANSLATION retained_intron ENSMUSG00000022760 Thap7 ENSMUST00000100125 ENSMUSP00000097701 TRANSLATION protein_coding - CCDS28004.1 1 309.0 5.0 0.9485 9.2 56.3 0.0 -4,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000022760 Thap7 ENSMUST00000232114 ENSMUSP00000156032 TRANSLATION nonsense_mediated_decay - - - 91.0 3.0 0.1485 0.0 0.0 0.0 -4,-2 0.0003 - -2.0 MINOR ENSMUSG00000022760 Thap7 ENSMUST00000231424 ENSMUSP00000156082 TRANSLATION nonsense_mediated_decay start - - 67.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000022760 Thap7 ENSMUST00000231446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022760 Thap7 ENSMUST00000232041 ENSMUSP00000156319 TRANSLATION protein_coding stop - - 190.0 3.0 0.1485 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000022760 Thap7 ENSMUST00000231623 - NO_TRANSLATION retained_intron ENSMUSG00000022760 Thap7 ENSMUST00000231288 ENSMUSP00000155899 TRANSLATION protein_coding stop - - 178.0 5.0 0.9485 0.0 56.3 0.0 -4,-2 0.0366 - -2.0 MINOR ENSMUSG00000022760 Thap7 ENSMUST00000231699 - NO_TRANSLATION retained_intron ENSMUSG00000022760 Thap7 ENSMUST00000231548 ENSMUSP00000156168 TRANSLATION protein_coding - CCDS28004.1 - 309.0 5.0 0.9485 9.2 56.3 0.0 -4,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000022760 Thap7 ENSMUST00000232046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032965 Ift57 ENSMUST00000046777 ENSMUSP00000046645 TRANSLATION protein_coding - CCDS28211.1 1 429.0 0.0 0.0 7.1 506.2 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000032965 Ift57 ENSMUST00000140914 ENSMUSP00000116412 TRANSLATION protein_coding start - 1 301.0 0.0 0.0 0.0 271.7 0.0 -2,-5 0.001 2 -2.0 MINOR ENSMUSG00000032965 Ift57 ENSMUST00000142682 ENSMUSP00000117882 TRANSLATION protein_coding - - 1 344.0 0.0 0.0 0.0 434.3 0.0 -3,-6 0.0602 2 1.686 MINOR ENSMUSG00000032965 Ift57 ENSMUST00000127784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005846 Rsl1d1 ENSMUST00000119953 ENSMUSP00000113431 TRANSLATION protein_coding - CCDS49763.1 1 452.0 0.0 1.407 0.1 181.4 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000005846 Rsl1d1 ENSMUST00000129962 - NO_TRANSLATION retained_intron ENSMUSG00000005846 Rsl1d1 ENSMUST00000124454 - NO_TRANSLATION retained_intron ENSMUSG00000005846 Rsl1d1 ENSMUST00000230002 ENSMUSP00000155495 TRANSLATION protein_coding start/stop - - 238.0 0.0 0.575 0.0 29.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000005846 Rsl1d1 ENSMUST00000230232 ENSMUSP00000155279 TRANSLATION nonsense_mediated_decay start - - 33.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022523 Fgf12 ENSMUST00000231717 ENSMUSP00000156274 TRANSLATION protein_coding - - - 115.0 0.0 1.0 0.0 26.7 0.0 -4,-1 0.0 1 0.798 MINOR ENSMUSG00000022523 Fgf12 ENSMUST00000232352 ENSMUSP00000155924 TRANSLATION protein_coding - - - 181.0 0.0 3.6 0.0 137.1 0.0 -4,-5 0.024 3 8.0 ALTERNATIVE:2 ENSMUSG00000022523 Fgf12 ENSMUST00000231399 ENSMUSP00000156108 TRANSLATION protein_coding stop - - 171.0 0.0 3.0 0.0 137.1 0.0 -4,-2 0.0103 2 -2.0 MINOR ENSMUSG00000022523 Fgf12 ENSMUST00000231429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022523 Fgf12 ENSMUST00000100024 ENSMUSP00000097601 TRANSLATION protein_coding - CCDS28092.1 1 243.0 0.0 3.6 0.0 137.1 0.0 -4,-1 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000022523 Fgf12 ENSMUST00000232632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022773 Ypel1 ENSMUST00000231394 ENSMUSP00000156275 TRANSLATION nonsense_mediated_decay - CCDS37268.1 - 118.0 4.0 3.33 36.9 48.6 0.0 -4,-2 1.0 - -2.0 MINOR ENSMUSG00000022773 Ypel1 ENSMUST00000232258 ENSMUSP00000156183 TRANSLATION protein_coding stop - - 62.0 2.0 1.83 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000022773 Ypel1 ENSMUST00000239090 ENSMUSP00000158907 TRANSLATION protein_coding - - - 152.0 4.0 3.33 0.0 48.6 0.0 -4,-7 0.0114 - 16.0 MINOR ENSMUSG00000022773 Ypel1 ENSMUST00000231518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022773 Ypel1 ENSMUST00000231514 ENSMUSP00000156145 TRANSLATION protein_coding stop - - 90.0 4.0 2.58 0.0 29.3 0.0 -4,-2 0.0008 - -2.0 MINOR ENSMUSG00000022773 Ypel1 ENSMUST00000232574 ENSMUSP00000156213 TRANSLATION protein_coding - - - 130.0 4.0 2.58 0.0 30.9 0.0 -4,-2 0.0012 - 12.316 MINOR ENSMUSG00000022773 Ypel1 ENSMUST00000232168 - NO_TRANSLATION retained_intron ENSMUSG00000022773 Ypel1 ENSMUST00000035682 ENSMUSP00000039760 TRANSLATION protein_coding - CCDS37268.1 1 118.0 4.0 3.33 36.9 48.6 0.0 -4,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000068068 Gm7735 ENSMUST00000089098 ENSMUSP00000086499 TRANSLATION protein_coding - - - 52.0 0.0 0.0 0.0 35.2 0.0 -4,-5 0.6987 - 6.0 PRINCIPAL:1 ENSMUSG00000022548 Apod ENSMUST00000145837 - NO_TRANSLATION retained_intron ENSMUSG00000022548 Apod ENSMUST00000023207 - NO_TRANSLATION retained_intron ENSMUSG00000022548 Apod ENSMUST00000155682 - NO_TRANSLATION retained_intron ENSMUSG00000022548 Apod ENSMUST00000156456 - NO_TRANSLATION retained_intron ENSMUSG00000022548 Apod ENSMUST00000115230 ENSMUSP00000110885 TRANSLATION protein_coding - CCDS28105.1 1 189.0 8.0 3.8 9.1 82.1 0.0 3,-1 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000022548 Apod ENSMUST00000130560 ENSMUSP00000119827 TRANSLATION protein_coding - CCDS28105.1 1 189.0 8.0 3.8 9.1 82.1 0.0 3,-1 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000045983 Eif4g1 ENSMUST00000136713 ENSMUSP00000143999 TRANSLATION protein_coding stop - 5 119.0 0.0 1.15 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000115463 ENSMUSP00000111123 TRANSLATION protein_coding - CCDS84213.1 1 1586.0 0.0 12.41 0.1 393.5 0.0 -4,-7 0.6913 41 8.0 ALTERNATIVE:2 ENSMUSG00000045983 Eif4g1 ENSMUST00000231477 - NO_TRANSLATION retained_intron ENSMUSG00000045983 Eif4g1 ENSMUST00000132320 - NO_TRANSLATION retained_intron ENSMUSG00000045983 Eif4g1 ENSMUST00000141034 ENSMUSP00000120035 TRANSLATION protein_coding stop - 5 202.0 0.0 1.15 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000128840 ENSMUSP00000143861 TRANSLATION protein_coding stop - 2 137.0 0.0 1.15 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000231598 ENSMUSP00000156364 TRANSLATION nonsense_mediated_decay start - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000156226 ENSMUSP00000119215 TRANSLATION nonsense_mediated_decay - - 5 79.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000151679 ENSMUSP00000120698 TRANSLATION protein_coding stop - 3 170.0 0.0 1.15 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000129958 - NO_TRANSLATION retained_intron ENSMUSG00000045983 Eif4g1 ENSMUST00000044783 ENSMUSP00000047678 TRANSLATION protein_coding - CCDS28055.1 1 1600.0 0.0 12.41 1.5 393.5 0.0 -4,-7 0.8818 42 8.312 ALTERNATIVE:2 ENSMUSG00000045983 Eif4g1 ENSMUST00000142344 ENSMUSP00000116029 TRANSLATION protein_coding stop - 1 958.0 0.0 3.88 0.0 193.8 0.0 -4,-7 0.0077 25 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000115460 ENSMUSP00000111120 TRANSLATION protein_coding - CCDS28055.1 5 1600.0 0.0 12.41 1.5 393.5 0.0 -4,-7 0.8818 42 8.312 ALTERNATIVE:2 ENSMUSG00000045983 Eif4g1 ENSMUST00000137690 - NO_TRANSLATION retained_intron ENSMUSG00000045983 Eif4g1 ENSMUST00000115457 ENSMUSP00000111117 TRANSLATION protein_coding - - 5 1553.0 0.0 12.41 0.3 393.5 0.0 -4,-1 0.4799 40 8.0 ALTERNATIVE:2 ENSMUSG00000045983 Eif4g1 ENSMUST00000136106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045983 Eif4g1 ENSMUST00000231618 ENSMUSP00000156280 TRANSLATION protein_coding stop - - 188.0 0.0 0.9 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000154594 ENSMUSP00000144233 TRANSLATION protein_coding stop - 2 129.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000154950 ENSMUSP00000115230 TRANSLATION protein_coding stop - 5 186.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000115461 ENSMUSP00000111121 TRANSLATION protein_coding - - 5 1594.0 0.0 12.41 1.5 393.5 0.0 -4,-7 0.7712 43 8.312 PRINCIPAL:3 ENSMUSG00000045983 Eif4g1 ENSMUST00000150333 ENSMUSP00000144107 TRANSLATION protein_coding stop - 5 900.0 0.0 3.88 0.0 197.1 0.0 -4,-7 0.0048 23 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000073840 ENSMUSP00000073506 TRANSLATION protein_coding - - 5 1593.0 0.0 12.41 2.6 393.5 0.0 -4,-7 1.0 42 9.0 ALTERNATIVE:2 ENSMUSG00000045983 Eif4g1 ENSMUST00000128594 ENSMUSP00000144594 TRANSLATION protein_coding stop - 5 795.0 0.0 3.88 0.0 197.1 0.0 -4,-5 0.0021 21 -2.0 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000143939 ENSMUSP00000144320 TRANSLATION protein_coding - - 5 1303.0 0.0 11.26 0.0 393.5 0.0 -4,-5 0.2099 36 5.702 MINOR ENSMUSG00000045983 Eif4g1 ENSMUST00000140576 ENSMUSP00000117587 TRANSLATION protein_coding stop - 5 209.0 0.0 1.15 0.0 0.0 0.0 -4,0 0.0005 4 -2.0 MINOR ENSMUSG00000022774 Ncbp2 ENSMUST00000140965 - NO_TRANSLATION retained_intron ENSMUSG00000022774 Ncbp2 ENSMUST00000126215 ENSMUSP00000156386 TRANSLATION protein_coding - - 5 165.0 3.0 2.75 0.0 61.5 0.0 -4,-5 0.0035 3 13.5 MINOR ENSMUSG00000022774 Ncbp2 ENSMUST00000023460 ENSMUSP00000023460 TRANSLATION protein_coding - CCDS28110.1 1 156.0 3.0 3.5 15.4 61.5 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000022774 Ncbp2 ENSMUST00000115178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075704 Txnrd2 ENSMUST00000115604 ENSMUSP00000111267 TRANSLATION protein_coding - - 1 359.0 48.0 7.78 0.0 80.7 0.0 -4,0 0.001 7 0.03 MINOR ENSMUSG00000075704 Txnrd2 ENSMUST00000115605 ENSMUSP00000111268 TRANSLATION nonsense_mediated_decay - - 5 466.0 52.0 12.03 0.0 119.5 0.0 -4,0 0.0038 8 -2.0 MINOR ENSMUSG00000075704 Txnrd2 ENSMUST00000126330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075704 Txnrd2 ENSMUST00000206151 ENSMUSP00000146030 TRANSLATION protein_coding - CCDS79434.1 5 527.0 58.0 13.86 0.0 180.2 0.0 -4,0 0.9364 10 18.0 PRINCIPAL:1 ENSMUSG00000075704 Txnrd2 ENSMUST00000149937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075704 Txnrd2 ENSMUST00000156604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075704 Txnrd2 ENSMUST00000138310 ENSMUSP00000146174 TRANSLATION protein_coding start - 3 96.0 7.0 1.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000075704 Txnrd2 ENSMUST00000178093 ENSMUSP00000136373 TRANSLATION protein_coding - - 5 491.0 52.0 12.53 0.0 134.0 0.0 -4,0 0.0019 10 8.568 MINOR ENSMUSG00000075704 Txnrd2 ENSMUST00000177856 ENSMUSP00000136402 TRANSLATION protein_coding - - 5 522.0 54.0 13.53 4.2 169.8 0.0 -4,0 1.0 10 16.052 MINOR ENSMUSG00000075704 Txnrd2 ENSMUST00000131303 ENSMUSP00000146096 TRANSLATION protein_coding start - 2 123.0 22.0 2.45 0.0 32.3 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000075704 Txnrd2 ENSMUST00000153457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075704 Txnrd2 ENSMUST00000206606 ENSMUSP00000146143 TRANSLATION protein_coding - - 1 496.0 56.0 12.86 0.0 144.4 0.0 -4,0 0.0031 10 12.522 MINOR ENSMUSG00000075704 Txnrd2 ENSMUST00000205679 ENSMUSP00000146311 TRANSLATION protein_coding - - 5 505.0 52.0 13.11 0.0 151.8 0.0 -3,1 0.0405 10 10.794 MINOR ENSMUSG00000075704 Txnrd2 ENSMUST00000115606 ENSMUSP00000111269 TRANSLATION protein_coding - CCDS79434.1 1 527.0 58.0 13.86 0.0 180.2 0.0 -4,0 0.9364 10 18.0 PRINCIPAL:1 ENSMUSG00000075704 Txnrd2 ENSMUST00000144233 ENSMUSP00000145926 TRANSLATION protein_coding stop - 5 165.0 24.0 4.5 0.0 32.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000075704 Txnrd2 ENSMUST00000126778 ENSMUSP00000145730 TRANSLATION protein_coding - - 1 101.0 17.0 2.35 0.0 32.3 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000035270 Impg2 ENSMUST00000069936 ENSMUSP00000063648 TRANSLATION protein_coding - CCDS37358.1 1 1243.0 0.0 3.0 0.3 96.1 1.0 4,-1 0.9018 - 8.0 ALTERNATIVE:2 ENSMUSG00000035270 Impg2 ENSMUST00000159842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035270 Impg2 ENSMUST00000160116 ENSMUSP00000125135 TRANSLATION protein_coding - - 1 1134.0 0.0 3.0 0.0 96.1 1.0 4,-1 0.9978 - 8.0 PRINCIPAL:4 ENSMUSG00000035270 Impg2 ENSMUST00000069778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022761 Lztr1 ENSMUST00000231746 - NO_TRANSLATION retained_intron ENSMUSG00000022761 Lztr1 ENSMUST00000232372 ENSMUSP00000155880 TRANSLATION protein_coding stop - - 280.0 0.0 3.934 0.0 109.4 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000022761 Lztr1 ENSMUST00000231684 - NO_TRANSLATION retained_intron ENSMUSG00000022761 Lztr1 ENSMUST00000232438 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022761 Lztr1 ENSMUST00000023444 ENSMUSP00000023444 TRANSLATION protein_coding - CCDS37272.1 1 837.0 0.0 8.731 0.1 253.4 0.0 -4,-6 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000022761 Lztr1 ENSMUST00000232379 - NO_TRANSLATION retained_intron ENSMUSG00000022761 Lztr1 ENSMUST00000231994 ENSMUSP00000155869 TRANSLATION nonsense_mediated_decay - - - 225.0 0.0 3.549 0.0 86.1 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000022761 Lztr1 ENSMUST00000232644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022761 Lztr1 ENSMUST00000231292 ENSMUSP00000156071 TRANSLATION protein_coding - - - 818.0 0.0 8.431 0.0 217.9 0.0 -4,-6 0.1017 11 9.27 MINOR ENSMUSG00000022761 Lztr1 ENSMUST00000231538 - NO_TRANSLATION retained_intron ENSMUSG00000022761 Lztr1 ENSMUST00000231230 - NO_TRANSLATION retained_intron ENSMUSG00000022761 Lztr1 ENSMUST00000232242 ENSMUSP00000156102 TRANSLATION protein_coding stop - - 58.0 0.0 1.3 0.0 24.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022761 Lztr1 ENSMUST00000231307 ENSMUSP00000156018 TRANSLATION protein_coding start - - 529.0 0.0 3.567 0.0 108.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022761 Lztr1 ENSMUST00000231326 - NO_TRANSLATION retained_intron ENSMUSG00000090777 Ccdc188 ENSMUST00000167061 ENSMUSP00000132278 TRANSLATION protein_coding start/stop - 5 249.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0013 - -2.0 MINOR ENSMUSG00000090777 Ccdc188 ENSMUST00000231965 ENSMUSP00000156029 TRANSLATION nonsense_mediated_decay - - - 307.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.004 - -2.0 MINOR ENSMUSG00000090777 Ccdc188 ENSMUST00000231860 ENSMUSP00000156197 TRANSLATION protein_coding stop - - 415.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0202 - -2.0 MINOR ENSMUSG00000090777 Ccdc188 ENSMUST00000231369 ENSMUSP00000155981 TRANSLATION protein_coding - - - 436.0 0.0 0.0 0.0 34.2 0.0 -4,-5 0.7152 - 6.0 PRINCIPAL:1 ENSMUSG00000050821 Fam131a ENSMUST00000118919 ENSMUSP00000113719 TRANSLATION protein_coding - - 5 276.0 0.0 1.5 6.7 461.7 0.0 -4,-1 1.0 4 10.0 PRINCIPAL:4 ENSMUSG00000050821 Fam131a ENSMUST00000232207 ENSMUSP00000156118 TRANSLATION protein_coding stop - - 170.0 0.0 1.5 0.0 322.4 0.0 -4,-1 0.028 2 -2.0 MINOR ENSMUSG00000050821 Fam131a ENSMUST00000149543 ENSMUSP00000114318 TRANSLATION protein_coding stop - 2 37.0 0.0 0.0 0.0 75.4 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000050821 Fam131a ENSMUST00000128273 ENSMUSP00000120596 TRANSLATION protein_coding stop - 5 202.0 0.0 1.5 0.0 362.2 0.0 -4,-1 0.0287 3 -2.0 MINOR ENSMUSG00000050821 Fam131a ENSMUST00000056518 ENSMUSP00000060194 TRANSLATION protein_coding - CCDS28056.1 1 361.0 0.0 1.5 6.0 470.2 0.0 -4,-2 0.9593 4 9.754 ALTERNATIVE:1 ENSMUSG00000046962 Zbtb21 ENSMUST00000232187 ENSMUSP00000156033 TRANSLATION protein_coding - - - 380.0 21.0 1.33 0.7 64.0 0.0 -4,-7 0.028 1 7.408 MINOR ENSMUSG00000046962 Zbtb21 ENSMUST00000231256 - NO_TRANSLATION retained_intron ENSMUSG00000046962 Zbtb21 ENSMUST00000063605 ENSMUSP00000068283 TRANSLATION protein_coding - CCDS37420.1 1 1066.0 27.0 1.81 2.2 141.9 0.0 -4,-7 1.0 7 15.0 PRINCIPAL:2 ENSMUSG00000046962 Zbtb21 ENSMUST00000231263 ENSMUSP00000156042 TRANSLATION protein_coding stop - - 212.0 0.0 1.29 0.0 90.6 0.0 -4,-7 0.0004 1 -2.0 MINOR ENSMUSG00000046962 Zbtb21 ENSMUST00000232010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046962 Zbtb21 ENSMUST00000231560 ENSMUSP00000156159 TRANSLATION protein_coding stop - - 72.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000046962 Zbtb21 ENSMUST00000113734 ENSMUSP00000109363 TRANSLATION protein_coding - CCDS37418.1 2 1094.0 27.0 1.81 0.0 141.9 0.0 -4,-7 0.4413 7 14.0 ALTERNATIVE:2 ENSMUSG00000046962 Zbtb21 ENSMUST00000052089 ENSMUSP00000052127 TRANSLATION protein_coding - CCDS37419.1 1 894.0 21.0 1.49 0.0 123.1 0.0 -4,-7 0.0794 7 8.336 MINOR ENSMUSG00000022865 Cxadr ENSMUST00000231251 ENSMUSP00000156128 TRANSLATION nonsense_mediated_decay start - - 52.0 0.0 1.33 0.0 35.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022865 Cxadr ENSMUST00000114229 ENSMUSP00000109867 TRANSLATION protein_coding - CCDS37379.1 1 352.0 0.0 5.75 4.4 98.7 1.0 2,-2 0.8229 14 9.308 ALTERNATIVE:2 ENSMUSG00000022865 Cxadr ENSMUST00000232148 ENSMUSP00000155907 TRANSLATION protein_coding stop - - 136.0 0.0 2.75 0.0 69.2 0.0 2,-2 0.0017 4 -2.0 MINOR ENSMUSG00000022865 Cxadr ENSMUST00000232189 - NO_TRANSLATION retained_intron ENSMUSG00000022865 Cxadr ENSMUST00000231356 ENSMUSP00000156281 TRANSLATION protein_coding - - - 164.0 0.0 2.8985 0.0 71.9 0.0 2,-2 0.0017 4 1.794 MINOR ENSMUSG00000022865 Cxadr ENSMUST00000023572 ENSMUSP00000023572 TRANSLATION protein_coding - CCDS28276.1 1 365.0 0.0 5.75 6.2 98.7 1.0 2,-2 1.0 15 10.0 PRINCIPAL:3 ENSMUSG00000071510 Or5k1b ENSMUST00000095991 ENSMUSP00000093690 TRANSLATION protein_coding - CCDS28235.1 - 309.0 0.0 1.0 11.5 173.9 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071510 Or5k1b ENSMUST00000214139 ENSMUSP00000150908 TRANSLATION protein_coding - CCDS28235.1 5 309.0 0.0 1.0 11.5 173.9 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018830 Myh11 ENSMUST00000090287 ENSMUSP00000087756 TRANSLATION protein_coding - - 1 1972.0 16.0 32.01 27.7 2753.1 0.0 -4,-5 1.0 104 17.06 PRINCIPAL:4 ENSMUSG00000018830 Myh11 ENSMUST00000230643 - NO_TRANSLATION retained_intron ENSMUSG00000018830 Myh11 ENSMUST00000231567 ENSMUSP00000156021 TRANSLATION protein_coding - - - 1979.0 16.0 32.34 29.7 2752.2 0.0 -4,-5 0.9729 104 17.75 ALTERNATIVE:1 ENSMUSG00000018830 Myh11 ENSMUST00000230397 ENSMUSP00000155052 TRANSLATION protein_coding - CCDS27972.1 - 1938.0 16.0 32.01 11.2 2753.1 0.0 -4,-5 0.7584 102 14.76 MINOR ENSMUSG00000008658 Rbfox1 ENSMUST00000231194 ENSMUSP00000155321 TRANSLATION protein_coding - - - 396.0 0.0 3.382 7.9 207.0 0.0 -4,-5 0.7274 4 9.833 MINOR ENSMUSG00000008658 Rbfox1 ENSMUST00000230658 ENSMUSP00000155069 TRANSLATION protein_coding stop - - 289.0 0.0 3.382 0.0 121.0 0.0 -4,-5 0.014 1 -2.0 MINOR ENSMUSG00000008658 Rbfox1 ENSMUST00000056416 ENSMUSP00000049970 TRANSLATION protein_coding - CCDS37245.1 1 396.0 0.0 3.382 9.9 207.0 0.0 -4,-5 0.9613 4 10.364 ALTERNATIVE:1 ENSMUSG00000008658 Rbfox1 ENSMUST00000229741 ENSMUSP00000155364 TRANSLATION protein_coding - CCDS27936.1 - 417.0 0.0 3.382 12.3 200.9 0.0 -4,-7 1.0 4 11.0 PRINCIPAL:4 ENSMUSG00000008658 Rbfox1 ENSMUST00000231031 ENSMUSP00000154916 TRANSLATION protein_coding start - - 133.0 0.0 0.0 0.0 120.3 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000008658 Rbfox1 ENSMUST00000230336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008658 Rbfox1 ENSMUST00000231088 ENSMUSP00000155799 TRANSLATION protein_coding - - - 358.0 0.0 3.382 0.7 207.0 0.0 -4,-5 0.2051 3 8.0 MINOR ENSMUSG00000008658 Rbfox1 ENSMUST00000115841 ENSMUSP00000111507 TRANSLATION protein_coding - CCDS37245.1 5 396.0 0.0 3.382 9.9 207.0 0.0 -4,-5 0.9613 4 10.364 ALTERNATIVE:1 ENSMUSG00000022533 Atp13a3 ENSMUST00000100013 ENSMUSP00000128224 TRANSLATION protein_coding - CCDS49821.1 5 1249.0 3.0 9.662 10.5 320.4 16.0 -4,-6 1.0 7 14.0 PRINCIPAL:4 ENSMUSG00000022533 Atp13a3 ENSMUST00000229503 ENSMUSP00000155615 TRANSLATION protein_coding start - - 259.0 0.0 0.58 0.0 0.0 7.0 0,-3 0.0038 1 -2.0 MINOR ENSMUSG00000022533 Atp13a3 ENSMUST00000229750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022533 Atp13a3 ENSMUST00000136065 - NO_TRANSLATION retained_intron ENSMUSG00000022533 Atp13a3 ENSMUST00000149882 - NO_TRANSLATION retained_intron ENSMUSG00000022533 Atp13a3 ENSMUST00000153656 - NO_TRANSLATION retained_intron ENSMUSG00000022533 Atp13a3 ENSMUST00000061350 ENSMUSP00000051645 TRANSLATION protein_coding - CCDS49820.1 5 1219.0 3.0 9.662 9.6 320.4 15.0 -4,-6 0.9391 7 13.715 ALTERNATIVE:1 ENSMUSG00000022533 Atp13a3 ENSMUST00000229616 ENSMUSP00000154990 TRANSLATION protein_coding stop - - 74.0 0.0 0.0 0.0 85.7 3.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000075122 Cd80 ENSMUST00000232409 ENSMUSP00000156252 TRANSLATION protein_coding - - - 212.0 0.0 1.365 0.0 35.0 1.0 0,-3 0.0024 - 5.412 MINOR ENSMUSG00000075122 Cd80 ENSMUST00000231716 ENSMUSP00000156031 TRANSLATION protein_coding - CCDS28168.1 - 306.0 0.0 2.365 0.0 102.5 1.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075122 Cd80 ENSMUST00000099816 ENSMUSP00000097404 TRANSLATION protein_coding - CCDS28168.1 1 306.0 0.0 2.365 0.0 102.5 1.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044442 N6amt1 ENSMUST00000054442 ENSMUSP00000061835 TRANSLATION protein_coding - CCDS28289.1 1 214.0 18.0 5.58 10.8 0.0 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000044442 N6amt1 ENSMUST00000118115 ENSMUSP00000113217 TRANSLATION protein_coding - - 1 181.0 18.0 4.5 0.0 0.0 0.0 -4,-7 0.0132 3 9.84 MINOR ENSMUSG00000044442 N6amt1 ENSMUST00000118310 ENSMUSP00000113229 TRANSLATION protein_coding - CCDS49889.1 1 138.0 18.0 3.566 0.0 0.0 0.0 -4,-7 0.0536 - 7.974 MINOR ENSMUSG00000044442 N6amt1 ENSMUST00000120284 ENSMUSP00000112510 TRANSLATION protein_coding - - 1 150.0 18.0 3.5 0.0 0.0 0.0 -4,-7 0.0121 - 7.842 MINOR ENSMUSG00000022687 Boc ENSMUST00000114634 ENSMUSP00000110281 TRANSLATION protein_coding - CCDS28186.1 1 1110.0 0.0 7.65 2.2 376.6 0.0 3,-2 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000022946 Dop1b ENSMUST00000226535 - NO_TRANSLATION retained_intron ENSMUSG00000022946 Dop1b ENSMUST00000226836 ENSMUSP00000154636 TRANSLATION protein_coding start/stop - - 727.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0077 10 -2.0 MINOR ENSMUSG00000022946 Dop1b ENSMUST00000226215 ENSMUSP00000154229 TRANSLATION nonsense_mediated_decay start - - 1288.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0198 20 -2.0 MINOR ENSMUSG00000022946 Dop1b ENSMUST00000228423 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022946 Dop1b ENSMUST00000227278 - NO_TRANSLATION retained_intron ENSMUSG00000022946 Dop1b ENSMUST00000231882 - NO_TRANSLATION retained_intron ENSMUSG00000022946 Dop1b ENSMUST00000228846 ENSMUSP00000154446 TRANSLATION protein_coding stop - - 106.0 0.0 0.0 0.0 142.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022946 Dop1b ENSMUST00000232210 - NO_TRANSLATION retained_intron ENSMUSG00000022946 Dop1b ENSMUST00000228261 ENSMUSP00000156073 TRANSLATION protein_coding start/stop - - 185.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000022946 Dop1b ENSMUST00000045004 ENSMUSP00000044437 TRANSLATION protein_coding - CCDS28343.1 1 2295.0 0.0 0.0 4.4 334.9 0.0 -4,-5 1.0 36 8.0 PRINCIPAL:1 ENSMUSG00000022946 Dop1b ENSMUST00000226418 - NO_TRANSLATION retained_intron ENSMUSG00000022946 Dop1b ENSMUST00000227156 ENSMUSP00000154771 TRANSLATION protein_coding - - - 2178.0 0.0 0.0 1.9 155.6 0.0 -4,-5 0.2721 36 0.53 MINOR ENSMUSG00000022946 Dop1b ENSMUST00000226335 - NO_TRANSLATION retained_intron ENSMUSG00000022946 Dop1b ENSMUST00000227939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022871 Fetub ENSMUST00000231768 ENSMUSP00000156347 TRANSLATION protein_coding - CCDS37300.1 - 388.0 0.0 6.8 0.0 75.3 0.0 4,-1 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000022871 Fetub ENSMUST00000232097 ENSMUSP00000155898 TRANSLATION protein_coding - CCDS37300.1 - 388.0 0.0 6.8 0.0 75.3 0.0 4,-1 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000022871 Fetub ENSMUST00000170805 ENSMUSP00000128989 TRANSLATION protein_coding - CCDS37300.1 1 388.0 0.0 6.8 0.0 75.3 0.0 4,-1 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000022871 Fetub ENSMUST00000167399 ENSMUSP00000128745 TRANSLATION protein_coding - CCDS37300.1 1 388.0 0.0 6.8 0.0 75.3 0.0 4,-1 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000022871 Fetub ENSMUST00000231880 ENSMUSP00000156318 TRANSLATION protein_coding stop - - 232.0 0.0 4.8 0.0 48.3 0.0 -4,-7 0.0006 6 -2.0 MINOR ENSMUSG00000022871 Fetub ENSMUST00000023587 ENSMUSP00000023587 TRANSLATION protein_coding - CCDS37300.1 1 388.0 0.0 6.8 0.0 75.3 0.0 4,-1 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000022871 Fetub ENSMUST00000116625 ENSMUSP00000112324 TRANSLATION protein_coding - CCDS49799.1 1 308.0 0.0 5.8 0.0 48.3 0.0 -4,-7 0.0177 8 7.848 MINOR ENSMUSG00000092009 Myh15 ENSMUST00000168680 ENSMUSP00000127539 TRANSLATION protein_coding - CCDS49868.1 5 1925.0 16.0 34.29 2.9 1265.8 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000022837 Iqcb1 ENSMUST00000153373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022837 Iqcb1 ENSMUST00000142619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022837 Iqcb1 ENSMUST00000114819 ENSMUSP00000110467 TRANSLATION protein_coding - - 1 597.0 0.0 0.0 0.0 48.9 0.0 -4,-5 0.2892 13 6.0 MINOR ENSMUSG00000022837 Iqcb1 ENSMUST00000146272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022837 Iqcb1 ENSMUST00000232162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022837 Iqcb1 ENSMUST00000023535 ENSMUSP00000023535 TRANSLATION protein_coding - CCDS28157.1 1 598.0 0.0 0.0 11.8 48.9 0.0 -4,-5 1.0 13 9.0 PRINCIPAL:1 ENSMUSG00000022837 Iqcb1 ENSMUST00000137076 - NO_TRANSLATION retained_intron ENSMUSG00000022837 Iqcb1 ENSMUST00000129123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060469 Krtap19-3 ENSMUST00000075284 ENSMUSP00000133176 TRANSLATION protein_coding - CCDS49895.1 - 87.0 0.0 0.0 0.0 36.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045341 Or2l5 ENSMUST00000214315 ENSMUSP00000150102 TRANSLATION protein_coding - CCDS28035.1 5 312.0 0.0 1.0 9.9 155.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045341 Or2l5 ENSMUST00000217566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045341 Or2l5 ENSMUST00000054606 ENSMUSP00000055344 TRANSLATION protein_coding - CCDS28035.1 - 312.0 0.0 1.0 9.9 155.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034206 Polq ENSMUST00000182622 - NO_TRANSLATION retained_intron ENSMUSG00000034206 Polq ENSMUST00000182946 ENSMUSP00000138685 TRANSLATION nonsense_mediated_decay - - 2 177.0 12.0 2.4 0.0 28.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034206 Polq ENSMUST00000183112 ENSMUSP00000138648 TRANSLATION nonsense_mediated_decay - - 2 177.0 12.0 2.4 0.0 28.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000034206 Polq ENSMUST00000182717 - NO_TRANSLATION retained_intron ENSMUSG00000034206 Polq ENSMUST00000182163 - NO_TRANSLATION retained_intron ENSMUSG00000034206 Polq ENSMUST00000054034 ENSMUSP00000059757 TRANSLATION protein_coding - CCDS28158.1 1 2544.0 17.0 17.66 0.0 476.2 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034206 Polq ENSMUST00000071452 ENSMUSP00000071396 TRANSLATION protein_coding - CCDS49845.1 1 2265.0 17.0 13.86 0.0 411.3 0.0 -4,-2 0.1405 - 8.106 MINOR ENSMUSG00000022864 D16Ertd472e ENSMUST00000231272 ENSMUSP00000156262 TRANSLATION protein_coding stop - - 171.0 5.0 0.0 0.0 355.5 0.0 -4,-5 0.0016 1 -2.0 MINOR ENSMUSG00000022864 D16Ertd472e ENSMUST00000232528 ENSMUSP00000156192 TRANSLATION protein_coding - - - 214.0 5.0 0.0 3.1 423.2 0.0 -4,-5 0.0662 2 5.624 MINOR ENSMUSG00000022864 D16Ertd472e ENSMUST00000232052 ENSMUSP00000156198 TRANSLATION protein_coding - CCDS28278.1 - 290.0 5.0 0.0 11.1 569.9 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000022864 D16Ertd472e ENSMUST00000231973 ENSMUSP00000156370 TRANSLATION protein_coding - CCDS28278.1 - 290.0 5.0 0.0 11.1 569.9 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000022864 D16Ertd472e ENSMUST00000232329 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022864 D16Ertd472e ENSMUST00000114218 ENSMUSP00000109856 TRANSLATION protein_coding - CCDS28278.1 5 290.0 5.0 0.0 11.1 569.9 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000022864 D16Ertd472e ENSMUST00000114219 ENSMUSP00000109857 TRANSLATION protein_coding - CCDS28278.1 1 290.0 5.0 0.0 11.1 569.9 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000022864 D16Ertd472e ENSMUST00000114220 ENSMUSP00000109858 TRANSLATION protein_coding - CCDS28278.1 1 290.0 5.0 0.0 11.1 569.9 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000022656 Nectin3 ENSMUST00000133935 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022656 Nectin3 ENSMUST00000023334 ENSMUSP00000023334 TRANSLATION protein_coding - CCDS28206.1 1 549.0 3.0 4.5 6.1 109.2 1.0 -1,-4 0.8513 7 12.002 PRINCIPAL:3 ENSMUSG00000022656 Nectin3 ENSMUST00000096052 ENSMUSP00000093757 TRANSLATION protein_coding - CCDS28205.1 1 438.0 3.0 4.98 0.0 109.2 4.0 -1,-4 0.2741 1 11.0 MINOR ENSMUSG00000022656 Nectin3 ENSMUST00000121803 ENSMUSP00000112567 TRANSLATION protein_coding - - 2 100.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000022656 Nectin3 ENSMUST00000119941 ENSMUSP00000113301 TRANSLATION protein_coding - - 3 93.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 0.0 MINOR ENSMUSG00000022656 Nectin3 ENSMUST00000149901 ENSMUSP00000117479 TRANSLATION protein_coding start/stop - 3 244.0 0.0 2.6 0.0 45.8 0.0 -1,-4 0.0 1 -2.0 MINOR ENSMUSG00000022656 Nectin3 ENSMUST00000124602 ENSMUSP00000115927 TRANSLATION protein_coding start - 3 122.0 0.0 0.48 0.0 0.0 4.0 -1,-5 0.0045 1 -2.0 MINOR ENSMUSG00000022656 Nectin3 ENSMUST00000132089 - NO_TRANSLATION retained_intron ENSMUSG00000022656 Nectin3 ENSMUST00000023335 ENSMUSP00000023335 TRANSLATION protein_coding - CCDS28204.1 1 510.0 3.0 4.98 6.2 109.2 4.0 -1,-4 1.0 3 13.0 ALTERNATIVE:1 ENSMUSG00000022656 Nectin3 ENSMUST00000121245 ENSMUSP00000113146 TRANSLATION protein_coding - - 3 185.0 0.0 0.48 0.0 0.0 4.0 -4,-5 0.0046 2 0.0 MINOR ENSMUSG00000075033 Nxpe3 ENSMUST00000099705 ENSMUSP00000097296 TRANSLATION protein_coding - CCDS49870.1 1 559.0 0.0 2.0 11.8 206.3 0.0 -1,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000050224 Krtap13 ENSMUST00000053149 ENSMUSP00000061716 TRANSLATION protein_coding - CCDS28300.1 - 197.0 0.0 0.0 0.0 111.6 0.0 -4,0 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000090951 Or5k17 ENSMUST00000214942 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090951 Or5k17 ENSMUST00000075361 ENSMUSP00000074825 TRANSLATION protein_coding - CCDS28240.1 2 317.0 0.0 2.0 5.7 172.5 8.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000090951 Or5k17 ENSMUST00000205986 ENSMUSP00000145877 TRANSLATION protein_coding - CCDS28240.1 2 317.0 0.0 2.0 5.7 172.5 8.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000090951 Or5k17 ENSMUST00000205668 ENSMUSP00000146247 TRANSLATION protein_coding stop - 2 128.0 0.0 1.0 0.0 73.5 4.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000090951 Or5k17 ENSMUST00000205742 ENSMUSP00000145806 TRANSLATION protein_coding - CCDS28240.1 - 317.0 0.0 2.0 5.7 172.5 8.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000022843 Clcn2 ENSMUST00000148131 - NO_TRANSLATION retained_intron ENSMUSG00000022843 Clcn2 ENSMUST00000007207 ENSMUSP00000007207 TRANSLATION protein_coding - CCDS28057.1 1 908.0 0.0 14.974 0.3 310.2 19.0 -2,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000022843 Clcn2 ENSMUST00000153075 - NO_TRANSLATION retained_intron ENSMUSG00000022843 Clcn2 ENSMUST00000132512 - NO_TRANSLATION retained_intron ENSMUSG00000022843 Clcn2 ENSMUST00000131522 ENSMUSP00000122921 TRANSLATION nonsense_mediated_decay - - 1 533.0 0.0 8.844 0.0 225.8 16.0 -2,-5 0.0045 6 -2.0 MINOR ENSMUSG00000022843 Clcn2 ENSMUST00000123417 - NO_TRANSLATION retained_intron ENSMUSG00000022843 Clcn2 ENSMUST00000231381 ENSMUSP00000155933 TRANSLATION nonsense_mediated_decay start - - 155.0 0.0 2.9 0.0 95.3 7.0 -1,-4 0.0034 - -2.0 MINOR ENSMUSG00000022843 Clcn2 ENSMUST00000232309 ENSMUSP00000155857 TRANSLATION protein_coding - - - 864.0 0.0 13.974 0.0 310.2 17.0 -2,-5 0.106 13 10.002 MINOR ENSMUSG00000022843 Clcn2 ENSMUST00000144400 - NO_TRANSLATION retained_intron ENSMUSG00000022843 Clcn2 ENSMUST00000120099 ENSMUSP00000112759 TRANSLATION protein_coding - - 5 891.0 0.0 14.474 0.0 274.8 17.0 -2,-5 0.0787 13 8.874 MINOR ENSMUSG00000022843 Clcn2 ENSMUST00000131833 - NO_TRANSLATION retained_intron ENSMUSG00000041974 Spidr ENSMUST00000229846 - NO_TRANSLATION retained_intron ENSMUSG00000041974 Spidr ENSMUST00000040248 ENSMUSP00000038820 TRANSLATION protein_coding - CCDS27980.1 1 933.0 4.0 0.0 0.0 1161.6 0.0 -4,-2 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000052917 Senp7 ENSMUST00000201011 ENSMUSP00000156009 TRANSLATION protein_coding - - 1 227.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0011 8 0.0 MINOR ENSMUSG00000052917 Senp7 ENSMUST00000089362 ENSMUSP00000086779 TRANSLATION protein_coding - CCDS28222.1 1 1037.0 5.0 4.766 0.1 114.5 0.0 -4,-7 1.0 16 11.0 PRINCIPAL:2 ENSMUSG00000052917 Senp7 ENSMUST00000201418 - NO_TRANSLATION retained_intron ENSMUSG00000052917 Senp7 ENSMUST00000202799 ENSMUSP00000144348 TRANSLATION protein_coding stop - 1 211.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0011 7 -2.0 MINOR ENSMUSG00000052917 Senp7 ENSMUST00000201915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052917 Senp7 ENSMUST00000200714 - NO_TRANSLATION retained_intron ENSMUSG00000052917 Senp7 ENSMUST00000201476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052917 Senp7 ENSMUST00000202108 - NO_TRANSLATION retained_intron ENSMUSG00000052917 Senp7 ENSMUST00000201218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052917 Senp7 ENSMUST00000089360 ENSMUSP00000086776 TRANSLATION protein_coding - - 5 1010.0 5.0 4.766 0.3 114.5 0.0 -4,-7 0.2862 15 11.0 ALTERNATIVE:2 ENSMUSG00000052917 Senp7 ENSMUST00000202159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052917 Senp7 ENSMUST00000201391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052917 Senp7 ENSMUST00000202000 ENSMUSP00000144116 TRANSLATION protein_coding - CCDS84243.1 2 291.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0417 9 0.0 MINOR ENSMUSG00000052917 Senp7 ENSMUST00000202272 - NO_TRANSLATION retained_intron ENSMUSG00000052917 Senp7 ENSMUST00000049128 ENSMUSP00000043023 TRANSLATION protein_coding - CCDS28223.1 1 254.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0412 9 0.0 MINOR ENSMUSG00000041205 Map6d1 ENSMUST00000040880 ENSMUSP00000043332 TRANSLATION protein_coding - CCDS37286.1 1 191.0 0.0 0.0 5.3 0.0 0.0 -4,-2 0.9629 6 2.0 PRINCIPAL:1 ENSMUSG00000022861 Dgkg ENSMUST00000089925 ENSMUSP00000087371 TRANSLATION protein_coding - CCDS28068.1 1 788.0 12.0 5.005 9.1 538.2 0.0 -4,-5 1.0 16 17.0 PRINCIPAL:3 ENSMUSG00000022861 Dgkg ENSMUST00000150553 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022861 Dgkg ENSMUST00000137311 ENSMUSP00000114441 TRANSLATION nonsense_mediated_decay - - 1 392.0 12.0 5.005 0.0 252.5 0.0 -4,-5 0.0267 5 -2.0 MINOR ENSMUSG00000022861 Dgkg ENSMUST00000231249 - NO_TRANSLATION retained_intron ENSMUSG00000022861 Dgkg ENSMUST00000023578 ENSMUSP00000023578 TRANSLATION protein_coding - CCDS84217.1 1 749.0 12.0 5.005 7.2 538.2 0.0 -4,-5 0.846 14 16.295 ALTERNATIVE:1 ENSMUSG00000079597 Cstdc4 ENSMUST00000231731 - NO_TRANSLATION retained_intron ENSMUSG00000079597 Cstdc4 ENSMUST00000114858 ENSMUSP00000110508 TRANSLATION protein_coding - CCDS37328.1 1 97.0 0.0 2.75 17.0 82.2 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000022755 Adgrg7 ENSMUST00000023437 ENSMUSP00000023437 TRANSLATION protein_coding - CCDS28225.1 1 785.0 0.0 1.448 0.1 169.2 0.0 -1,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000009569 Mrtfb ENSMUST00000056715 ENSMUSP00000054993 TRANSLATION protein_coding - CCDS37257.1 1 102.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0387 - 0.0 MINOR ENSMUSG00000009569 Mrtfb ENSMUST00000115809 ENSMUSP00000111476 TRANSLATION protein_coding - CCDS37257.1 2 102.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0387 - 0.0 MINOR ENSMUSG00000009569 Mrtfb ENSMUST00000149359 ENSMUSP00000122815 TRANSLATION protein_coding - CCDS37258.1 1 1080.0 0.0 3.4 0.1 107.6 0.0 -4,-5 1.0 19 8.0 PRINCIPAL:2 ENSMUSG00000009569 Mrtfb ENSMUST00000009713 ENSMUSP00000009713 TRANSLATION protein_coding - CCDS49768.1 5 1091.0 0.0 3.4 0.1 107.6 0.0 -4,-5 0.6069 19 8.0 ALTERNATIVE:2 ENSMUSG00000000884 Gnb1l ENSMUST00000232235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000884 Gnb1l ENSMUST00000129952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000884 Gnb1l ENSMUST00000139625 ENSMUSP00000120897 TRANSLATION protein_coding stop - 5 75.0 0.0 2.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000884 Gnb1l ENSMUST00000151253 - NO_TRANSLATION retained_intron ENSMUSG00000000884 Gnb1l ENSMUST00000147739 ENSMUSP00000123200 TRANSLATION protein_coding stop - 3 122.0 0.0 3.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000000884 Gnb1l ENSMUST00000167778 ENSMUSP00000130371 TRANSLATION protein_coding - - 1 357.0 0.0 6.29 0.0 22.7 0.0 -4,-2 0.021 - 9.6 MINOR ENSMUSG00000000884 Gnb1l ENSMUST00000231621 ENSMUSP00000156162 TRANSLATION protein_coding - CCDS28022.1 - 326.0 0.0 7.49 1.8 22.7 0.0 -4,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000000884 Gnb1l ENSMUST00000124924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000884 Gnb1l ENSMUST00000000904 ENSMUSP00000000904 TRANSLATION nonsense_mediated_decay - - 5 151.0 0.0 2.1 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000000884 Gnb1l ENSMUST00000115601 ENSMUSP00000111264 TRANSLATION protein_coding - CCDS70695.1 1 312.0 0.0 6.83 0.0 22.7 0.0 -4,-2 0.1221 1 10.68 MINOR ENSMUSG00000000884 Gnb1l ENSMUST00000090086 ENSMUSP00000087544 TRANSLATION protein_coding - CCDS28022.1 1 326.0 0.0 7.49 1.8 22.7 0.0 -4,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000000884 Gnb1l ENSMUST00000115600 ENSMUSP00000111263 TRANSLATION nonsense_mediated_decay - - 1 198.0 0.0 4.86 0.0 0.0 0.0 -4,-2 0.0004 1 -2.0 MINOR ENSMUSG00000000884 Gnb1l ENSMUST00000149035 ENSMUSP00000114875 TRANSLATION protein_coding stop - 5 78.0 0.0 2.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000096534 Krtap16-3 ENSMUST00000179707 ENSMUSP00000139557 TRANSLATION protein_coding - CCDS79478.1 - 86.0 0.0 0.0 0.0 45.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061100 Retnla ENSMUST00000023329 ENSMUSP00000023329 TRANSLATION protein_coding - CCDS49864.1 1 138.0 0.0 1.91 0.0 109.1 0.0 -4,-2 0.2357 1 8.0 ALTERNATIVE:2 ENSMUSG00000061100 Retnla ENSMUST00000238847 ENSMUSP00000159097 TRANSLATION protein_coding - - - 111.0 0.0 1.91 2.6 109.1 0.0 4,-1 1.0 1 9.0 PRINCIPAL:2 ENSMUSG00000053774 Ubxn7 ENSMUST00000232137 ENSMUSP00000156376 TRANSLATION protein_coding - - - 467.0 0.0 7.9 0.0 175.1 0.0 -4,-7 0.0527 7 12.0 MINOR ENSMUSG00000053774 Ubxn7 ENSMUST00000115151 ENSMUSP00000110804 TRANSLATION protein_coding - CCDS49826.1 1 489.0 0.0 7.9 12.8 175.1 0.0 -4,-7 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000053774 Ubxn7 ENSMUST00000232666 - NO_TRANSLATION retained_intron ENSMUSG00000053774 Ubxn7 ENSMUST00000232016 - NO_TRANSLATION retained_intron ENSMUSG00000094539 Or5h23 ENSMUST00000215647 ENSMUSP00000150473 TRANSLATION protein_coding - CCDS28244.1 2 309.0 0.0 1.0 10.4 159.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094539 Or5h23 ENSMUST00000078517 ENSMUSP00000077604 TRANSLATION protein_coding - CCDS28244.1 - 309.0 0.0 1.0 10.4 159.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052299 Ltn1 ENSMUST00000232095 ENSMUSP00000156299 TRANSLATION protein_coding - - - 724.0 0.0 1.315 0.0 0.0 0.0 -4,-7 0.0429 15 6.0 MINOR ENSMUSG00000052299 Ltn1 ENSMUST00000039449 ENSMUSP00000038775 TRANSLATION protein_coding - CCDS37382.1 1 1767.0 7.0 1.315 10.0 27.7 0.0 -4,-7 1.0 30 21.0 PRINCIPAL:1 ENSMUSG00000071562 Stfa1 ENSMUST00000232150 ENSMUSP00000156337 TRANSLATION protein_coding - CCDS37331.1 - 97.0 0.0 2.75 13.9 83.4 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000071562 Stfa1 ENSMUST00000042097 ENSMUSP00000049068 TRANSLATION protein_coding - - 1 128.0 0.0 2.75 0.0 60.6 0.0 -4,-5 0.0145 2 10.362 MINOR ENSMUSG00000056350 Krtap13-1 ENSMUST00000060494 ENSMUSP00000055537 TRANSLATION protein_coding - CCDS28299.1 - 168.0 0.0 0.0 3.9 190.5 0.0 -4,-2 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000022974 Paxbp1 ENSMUST00000124653 - NO_TRANSLATION retained_intron ENSMUSG00000022974 Paxbp1 ENSMUST00000128922 - NO_TRANSLATION retained_intron ENSMUSG00000022974 Paxbp1 ENSMUST00000023698 ENSMUSP00000023698 TRANSLATION nonsense_mediated_decay start - 1 450.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 4 -2.0 MINOR ENSMUSG00000022974 Paxbp1 ENSMUST00000146281 - NO_TRANSLATION retained_intron ENSMUSG00000022974 Paxbp1 ENSMUST00000127002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022974 Paxbp1 ENSMUST00000145136 ENSMUSP00000117142 TRANSLATION nonsense_mediated_decay start - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022974 Paxbp1 ENSMUST00000118522 ENSMUSP00000113835 TRANSLATION protein_coding - CCDS49908.1 1 919.0 0.0 0.0 6.4 119.8 0.0 -4,-7 1.0 16 8.0 PRINCIPAL:1 ENSMUSG00000022974 Paxbp1 ENSMUST00000150397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022847 Thpo ENSMUST00000115437 ENSMUSP00000111097 TRANSLATION protein_coding - CCDS37292.1 1 356.0 0.0 3.35 3.9 155.0 0.0 4,-1 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000022847 Thpo ENSMUST00000232217 ENSMUSP00000155952 TRANSLATION protein_coding - - - 385.0 0.0 3.35 0.0 155.0 0.0 -4,-7 0.0258 - 8.0 ALTERNATIVE:2 ENSMUSG00000022847 Thpo ENSMUST00000076422 ENSMUSP00000075756 TRANSLATION protein_coding - CCDS37292.1 1 356.0 0.0 3.35 3.9 155.0 0.0 4,-1 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000022847 Thpo ENSMUST00000231826 ENSMUSP00000155914 TRANSLATION protein_coding stop - - 231.0 0.0 2.35 0.0 120.4 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000035629 Rubcn ENSMUST00000040986 ENSMUSP00000048811 TRANSLATION protein_coding - CCDS28124.1 1 941.0 13.0 5.7 4.3 269.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:3 ENSMUSG00000035629 Rubcn ENSMUST00000089684 ENSMUSP00000087114 TRANSLATION protein_coding - CCDS49832.1 1 956.0 13.0 5.7 3.2 269.6 0.0 -4,-5 0.8808 4 15.334 ALTERNATIVE:2 ENSMUSG00000035629 Rubcn ENSMUST00000135480 - NO_TRANSLATION retained_intron ENSMUSG00000035629 Rubcn ENSMUST00000119810 ENSMUSP00000113087 TRANSLATION protein_coding - - 5 880.0 13.0 5.7 0.0 264.3 0.0 -4,-5 0.073 4 14.0 MINOR ENSMUSG00000035629 Rubcn ENSMUST00000140229 - NO_TRANSLATION retained_intron ENSMUSG00000035629 Rubcn ENSMUST00000115105 ENSMUSP00000110757 TRANSLATION protein_coding - - 5 927.0 13.0 5.7 0.0 269.6 0.0 -4,-5 0.1457 5 14.0 MINOR ENSMUSG00000035629 Rubcn ENSMUST00000153556 - NO_TRANSLATION retained_intron ENSMUSG00000035629 Rubcn ENSMUST00000149621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035629 Rubcn ENSMUST00000152920 - NO_TRANSLATION retained_intron ENSMUSG00000022771 Ppil2 ENSMUST00000232303 - NO_TRANSLATION retained_intron ENSMUSG00000022771 Ppil2 ENSMUST00000023455 ENSMUSP00000023455 TRANSLATION protein_coding - CCDS27993.1 1 521.0 8.0 11.4 17.4 172.5 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000022771 Ppil2 ENSMUST00000232397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022771 Ppil2 ENSMUST00000231898 - NO_TRANSLATION retained_intron ENSMUSG00000022771 Ppil2 ENSMUST00000231635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022771 Ppil2 ENSMUST00000232481 ENSMUSP00000156114 TRANSLATION protein_coding stop - - 147.0 0.0 2.5 0.0 51.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022771 Ppil2 ENSMUST00000231536 - NO_TRANSLATION retained_intron ENSMUSG00000022771 Ppil2 ENSMUST00000231587 - NO_TRANSLATION retained_intron ENSMUSG00000022771 Ppil2 ENSMUST00000231712 ENSMUSP00000155861 TRANSLATION protein_coding - CCDS27993.1 - 521.0 8.0 11.4 17.4 172.5 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000022771 Ppil2 ENSMUST00000231245 ENSMUSP00000156016 TRANSLATION protein_coding - - - 188.0 0.0 5.33 0.0 0.0 0.0 -4,-6 0.0 3 0.0 MINOR ENSMUSG00000022771 Ppil2 ENSMUST00000164458 ENSMUSP00000131422 TRANSLATION protein_coding - CCDS27993.1 1 521.0 8.0 11.4 17.4 172.5 0.0 -4,-6 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000022771 Ppil2 ENSMUST00000232510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022771 Ppil2 ENSMUST00000231451 ENSMUSP00000156086 TRANSLATION nonsense_mediated_decay - - - 207.0 0.0 5.33 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000022771 Ppil2 ENSMUST00000231287 - NO_TRANSLATION retained_intron ENSMUSG00000022771 Ppil2 ENSMUST00000232169 - NO_TRANSLATION retained_intron ENSMUSG00000047434 Xxylt1 ENSMUST00000140566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047434 Xxylt1 ENSMUST00000142870 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047434 Xxylt1 ENSMUST00000055389 ENSMUSP00000050246 TRANSLATION protein_coding - CCDS49822.1 1 392.0 2.0 3.8 8.0 28.7 0.0 -2,0 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000047434 Xxylt1 ENSMUST00000153859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022705 Drd3 ENSMUST00000023390 ENSMUSP00000023390 TRANSLATION protein_coding - CCDS28179.1 1 446.0 0.0 5.4 2.3 250.7 6.0 -4,-7 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000022705 Drd3 ENSMUST00000229953 ENSMUSP00000155033 TRANSLATION protein_coding - - - 478.0 0.0 5.4 0.3 250.7 6.0 -4,-6 0.2386 - 6.0 ALTERNATIVE:2 ENSMUSG00000022702 Hira ENSMUST00000153397 ENSMUSP00000117944 TRANSLATION nonsense_mediated_decay - - 1 60.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022702 Hira ENSMUST00000128321 ENSMUSP00000156256 TRANSLATION nonsense_mediated_decay - - 5 42.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022702 Hira ENSMUST00000144609 ENSMUSP00000155948 TRANSLATION nonsense_mediated_decay - - 2 88.0 0.0 1.36845 0.0 15.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022702 Hira ENSMUST00000131444 - NO_TRANSLATION retained_intron ENSMUSG00000022702 Hira ENSMUST00000140748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022702 Hira ENSMUST00000120532 ENSMUSP00000112614 TRANSLATION protein_coding - - 1 453.0 0.0 4.27445 0.0 118.8 0.0 -4,-5 0.0002 6 3.972 MINOR ENSMUSG00000022702 Hira ENSMUST00000004222 ENSMUSP00000004222 TRANSLATION protein_coding - CCDS28031.1 1 1015.0 0.0 5.28845 8.3 325.5 0.0 -4,-5 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000022702 Hira ENSMUST00000232419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022702 Hira ENSMUST00000150799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034379 Wdr5b ENSMUST00000042203 ENSMUSP00000040852 TRANSLATION protein_coding - CCDS28145.1 - 328.0 0.0 1.0 13.2 205.4 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022752 Tomm70a ENSMUST00000166897 ENSMUSP00000129186 TRANSLATION protein_coding - CCDS28227.1 1 611.0 0.0 10.16 8.0 84.1 0.0 -4,-6 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000022752 Tomm70a ENSMUST00000231901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022752 Tomm70a ENSMUST00000231298 - NO_TRANSLATION retained_intron ENSMUSG00000022844 Pdia5 ENSMUST00000231406 - NO_TRANSLATION retained_intron ENSMUSG00000022844 Pdia5 ENSMUST00000231779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022844 Pdia5 ENSMUST00000023550 ENSMUSP00000023550 TRANSLATION protein_coding - CCDS37323.1 1 517.0 10.0 9.545 4.9 233.8 0.0 2,-2 1.0 21 20.0 PRINCIPAL:1 ENSMUSG00000022844 Pdia5 ENSMUST00000231595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109588 Lnp1 ENSMUST00000210579 ENSMUSP00000147973 TRANSLATION protein_coding - CCDS84244.1 5 178.0 0.0 0.0 8.6 224.1 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000038168 P3h2 ENSMUST00000160067 - NO_TRANSLATION retained_intron ENSMUSG00000038168 P3h2 ENSMUST00000039990 ENSMUSP00000038056 TRANSLATION protein_coding - CCDS28086.1 1 703.0 3.0 3.52 2.3 41.4 0.0 3,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000038168 P3h2 ENSMUST00000161878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038168 P3h2 ENSMUST00000159161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000066257 Or5ac24 ENSMUST00000207927 ENSMUSP00000146906 TRANSLATION protein_coding - CCDS28255.1 5 306.0 0.0 1.0 11.5 162.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000066257 Or5ac24 ENSMUST00000084791 ENSMUSP00000081849 TRANSLATION protein_coding - CCDS28255.1 - 306.0 0.0 1.0 11.5 162.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022536 Glyr1 ENSMUST00000229928 - NO_TRANSLATION retained_intron ENSMUSG00000022536 Glyr1 ENSMUST00000231132 - NO_TRANSLATION retained_intron ENSMUSG00000022536 Glyr1 ENSMUST00000231063 - NO_TRANSLATION retained_intron ENSMUSG00000022536 Glyr1 ENSMUST00000023189 ENSMUSP00000023189 TRANSLATION protein_coding - CCDS27930.1 1 546.0 24.0 8.96 14.7 182.9 0.0 -4,-7 0.8695 14 20.284 MINOR ENSMUSG00000022536 Glyr1 ENSMUST00000115844 ENSMUSP00000111510 TRANSLATION protein_coding - CCDS37244.1 1 552.0 24.0 9.29 14.7 200.5 0.0 -4,-7 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000022892 App ENSMUST00000005406 ENSMUSP00000005406 TRANSLATION protein_coding - CCDS28285.1 1 695.0 0.0 12.665 8.1 664.6 2.0 4,-1 1.0 12 8.402 MINOR ENSMUSG00000022892 App ENSMUST00000227654 - NO_TRANSLATION retained_intron ENSMUSG00000022892 App ENSMUST00000227723 ENSMUSP00000154061 TRANSLATION protein_coding - - - 770.0 0.0 13.665 1.9 734.4 2.0 4,-1 0.5755 14 8.381 ALTERNATIVE:2 ENSMUSG00000022892 App ENSMUST00000226232 ENSMUSP00000154389 TRANSLATION protein_coding - - - 751.0 0.0 13.665 0.0 734.4 2.0 4,-1 0.3605 14 8.0 MINOR ENSMUSG00000022892 App ENSMUST00000227753 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022892 App ENSMUST00000228509 - NO_TRANSLATION retained_intron ENSMUSG00000022892 App ENSMUST00000227990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022892 App ENSMUST00000227737 ENSMUSP00000154401 TRANSLATION protein_coding - - - 582.0 0.0 9.915 0.0 561.0 0.0 4,-1 0.009 10 0.8 MINOR ENSMUSG00000022892 App ENSMUST00000227021 ENSMUSP00000153907 TRANSLATION protein_coding - - - 733.0 0.0 13.665 3.9 734.4 2.0 4,-1 0.9956 14 9.224 PRINCIPAL:2 ENSMUSG00000022892 App ENSMUST00000228375 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022892 App ENSMUST00000226801 ENSMUSP00000154097 TRANSLATION protein_coding - - - 752.0 0.0 13.665 1.9 734.4 2.0 4,-1 0.6087 14 8.381 ALTERNATIVE:2 ENSMUSG00000068284 Usf3 ENSMUST00000169582 ENSMUSP00000128627 TRANSLATION protein_coding - CCDS28184.1 5 2221.0 0.0 2.08 0.0 48.9 0.0 -4,-5 0.893 1 8.0 PRINCIPAL:4 ENSMUSG00000068284 Usf3 ENSMUST00000088356 ENSMUSP00000085694 TRANSLATION protein_coding - - 5 100.0 0.0 2.08 0.0 48.9 0.0 -4,-5 0.7414 - 8.0 ALTERNATIVE:2 ENSMUSG00000068284 Usf3 ENSMUST00000119746 ENSMUSP00000112620 TRANSLATION protein_coding - CCDS28184.1 5 2221.0 0.0 2.08 0.0 48.9 0.0 -4,-5 0.893 1 8.0 PRINCIPAL:4 ENSMUSG00000068284 Usf3 ENSMUST00000141015 - NO_TRANSLATION retained_intron ENSMUSG00000065968 Ifitm7 ENSMUST00000117803 ENSMUSP00000113641 TRANSLATION protein_coding - - 1 141.0 0.0 0.6 0.0 99.5 2.0 -4,-7 0.7864 - 8.0 PRINCIPAL:2 ENSMUSG00000065968 Ifitm7 ENSMUST00000230206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000065968 Ifitm7 ENSMUST00000178021 ENSMUSP00000136512 TRANSLATION protein_coding - - - 107.0 0.0 0.6 0.1 99.5 2.0 -4,-5 0.0821 - 8.0 ALTERNATIVE:2 ENSMUSG00000046748 Tmem45a2 ENSMUST00000227043 ENSMUSP00000154589 TRANSLATION protein_coding - CCDS49875.1 - 289.0 0.0 5.0 0.0 88.7 7.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000046748 Tmem45a2 ENSMUST00000226147 - NO_TRANSLATION retained_intron ENSMUSG00000046748 Tmem45a2 ENSMUST00000067173 ENSMUSP00000070137 TRANSLATION protein_coding - CCDS49875.1 2 289.0 0.0 5.0 0.0 88.7 7.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000038055 Dexi ENSMUST00000183355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038055 Dexi ENSMUST00000184863 ENSMUSP00000139108 TRANSLATION protein_coding - CCDS37252.1 2 95.0 0.0 0.5 11.6 165.2 1.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038055 Dexi ENSMUST00000038281 ENSMUSP00000047676 TRANSLATION protein_coding - CCDS37252.1 1 95.0 0.0 0.5 11.6 165.2 1.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036208 Nepro ENSMUST00000048788 ENSMUSP00000038779 TRANSLATION protein_coding - CCDS28187.1 1 564.0 0.0 3.388 6.8 221.3 0.0 -4,-2 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000036208 Nepro ENSMUST00000132610 ENSMUSP00000116115 TRANSLATION nonsense_mediated_decay start - 2 118.0 0.0 2.688 0.0 149.3 0.0 -4,-2 0.0002 1 -2.0 MINOR ENSMUSG00000036208 Nepro ENSMUST00000147804 ENSMUSP00000122052 TRANSLATION nonsense_mediated_decay - - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000036208 Nepro ENSMUST00000130805 - NO_TRANSLATION retained_intron ENSMUSG00000036208 Nepro ENSMUST00000123673 ENSMUSP00000122861 TRANSLATION nonsense_mediated_decay - - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000044763 Trmt10c ENSMUST00000059052 ENSMUSP00000058954 TRANSLATION protein_coding - CCDS28220.1 1 414.0 0.0 0.6 1.5 150.1 0.0 -4,0 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000032940 Rbm11 ENSMUST00000114253 ENSMUSP00000109891 TRANSLATION protein_coding - CCDS37377.1 1 238.0 0.0 2.375 0.1 54.5 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000032940 Rbm11 ENSMUST00000046378 ENSMUSP00000038956 TRANSLATION protein_coding - CCDS37377.1 5 238.0 0.0 2.375 0.1 54.5 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000032940 Rbm11 ENSMUST00000114249 ENSMUSP00000109887 TRANSLATION protein_coding - - 5 238.0 0.0 2.375 0.1 54.5 0.0 -4,-5 0.6405 2 8.0 ALTERNATIVE:2 ENSMUSG00000062400 Krtap6-5 ENSMUST00000074637 ENSMUSP00000074211 TRANSLATION protein_coding - CCDS37390.1 - 78.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000075330 A930003A15Rik ENSMUST00000231564 ENSMUSP00000159148 TRANSLATION protein_coding - - - 55.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.028 - 0.0 ALTERNATIVE:2 ENSMUSG00000075330 A930003A15Rik ENSMUST00000100083 ENSMUSP00000159001 TRANSLATION protein_coding - - 1 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5673 - 0.0 PRINCIPAL:2 ENSMUSG00000022883 Robo1 ENSMUST00000232205 ENSMUSP00000155958 TRANSLATION protein_coding start - - 1622.0 0.0 15.2 0.0 433.4 1.0 -4,-5 0.298 23 -2.0 MINOR ENSMUSG00000022883 Robo1 ENSMUST00000231265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022883 Robo1 ENSMUST00000232264 - NO_TRANSLATION retained_intron ENSMUSG00000022883 Robo1 ENSMUST00000231566 - NO_TRANSLATION retained_intron ENSMUSG00000022883 Robo1 ENSMUST00000232545 - NO_TRANSLATION retained_intron ENSMUSG00000022883 Robo1 ENSMUST00000023600 ENSMUSP00000023600 TRANSLATION protein_coding - CCDS37376.1 1 1612.0 0.0 15.05 8.9 433.4 1.0 -2,-5 1.0 23 14.7 PRINCIPAL:1 ENSMUSG00000022883 Robo1 ENSMUST00000231474 - NO_TRANSLATION retained_intron ENSMUSG00000022883 Robo1 ENSMUST00000231580 ENSMUSP00000156106 TRANSLATION protein_coding stop - - 133.0 0.0 1.08 0.0 62.7 0.0 2,-2 0.0008 3 -2.0 MINOR ENSMUSG00000022883 Robo1 ENSMUST00000232432 - NO_TRANSLATION retained_intron ENSMUSG00000023147 Get1 ENSMUST00000232884 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023147 Get1 ENSMUST00000023913 ENSMUSP00000023913 TRANSLATION protein_coding - CCDS28354.1 1 174.0 0.0 4.58 12.5 114.2 4.0 -1,-4 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000023147 Get1 ENSMUST00000233805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023147 Get1 ENSMUST00000233227 - NO_TRANSLATION retained_intron ENSMUSG00000023147 Get1 ENSMUST00000233273 ENSMUSP00000156729 TRANSLATION protein_coding - - - 113.0 0.0 2.83 0.0 53.1 4.0 -1,-4 0.0038 2 4.836 MINOR ENSMUSG00000023147 Get1 ENSMUST00000233566 ENSMUSP00000156461 TRANSLATION protein_coding - - - 139.0 0.0 2.0 0.0 54.1 3.0 -1,-4 0.0 1 3.234 MINOR ENSMUSG00000023147 Get1 ENSMUST00000232832 ENSMUSP00000156449 TRANSLATION protein_coding - - - 224.0 0.0 1.0 0.0 0.0 3.0 -1,-4 0.0017 - 0.0 MINOR ENSMUSG00000057174 Krtap19-9b ENSMUST00000077715 ENSMUSP00000076896 TRANSLATION protein_coding - CCDS49896.1 - 58.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000050058 Prm3 ENSMUST00000050864 ENSMUSP00000059630 TRANSLATION protein_coding - CCDS27954.1 - 101.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.8786 - 0.0 PRINCIPAL:1 ENSMUSG00000046598 Bdh1 ENSMUST00000149039 ENSMUSP00000119164 TRANSLATION protein_coding stop - 3 265.0 21.0 4.0 0.0 127.8 0.0 -4,-2 0.0047 7 -2.0 MINOR ENSMUSG00000046598 Bdh1 ENSMUST00000115226 ENSMUSP00000110881 TRANSLATION protein_coding - CCDS28106.1 1 343.0 27.0 5.0 17.6 142.6 0.0 -4,0 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000046598 Bdh1 ENSMUST00000126825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046598 Bdh1 ENSMUST00000115227 ENSMUSP00000110882 TRANSLATION protein_coding - CCDS28106.1 1 343.0 27.0 5.0 17.6 142.6 0.0 -4,0 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000046598 Bdh1 ENSMUST00000128286 - NO_TRANSLATION retained_intron ENSMUSG00000046598 Bdh1 ENSMUST00000089759 ENSMUSP00000087192 TRANSLATION protein_coding - CCDS28106.1 1 343.0 27.0 5.0 17.6 142.6 0.0 -4,0 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000046598 Bdh1 ENSMUST00000232433 ENSMUSP00000156095 TRANSLATION nonsense_mediated_decay - - - 37.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000046345 Smco1 ENSMUST00000093183 ENSMUSP00000090873 TRANSLATION protein_coding - CCDS28119.2 5 214.0 0.0 2.4 7.7 385.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000093701 Gm21970 ENSMUST00000161517 ENSMUSP00000125579 TRANSLATION nonsense_mediated_decay,RT start - 5 134.0 0.0 1.04 0.0 63.5 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000093701 Gm21970 ENSMUST00000160764 ENSMUSP00000123997 TRANSLATION protein_coding,RT - - 5 569.0 0.0 8.02 0.0 271.6 0.0 1,-4 0.8165 - -2.0 PRINCIPAL:5 ENSMUSG00000039929 Urb1 ENSMUST00000142955 - NO_TRANSLATION retained_intron ENSMUSG00000039929 Urb1 ENSMUST00000140920 ENSMUSP00000114717 TRANSLATION protein_coding - CCDS49905.1 5 2277.0 0.0 2.25 0.1 466.1 0.0 -4,-2 1.0 42 12.0 PRINCIPAL:1 ENSMUSG00000039929 Urb1 ENSMUST00000140942 - NO_TRANSLATION retained_intron ENSMUSG00000039929 Urb1 ENSMUST00000128989 - NO_TRANSLATION retained_intron ENSMUSG00000039929 Urb1 ENSMUST00000140158 - NO_TRANSLATION retained_intron ENSMUSG00000075269 Bex6 ENSMUST00000099990 ENSMUSP00000097570 TRANSLATION protein_coding - CCDS28116.1 - 114.0 0.0 0.0 1.0 44.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000075269 Bex6 ENSMUST00000231512 ENSMUSP00000156069 TRANSLATION protein_coding - CCDS28116.1 - 114.0 0.0 0.0 1.0 44.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000075269 Bex6 ENSMUST00000231941 ENSMUSP00000156333 TRANSLATION protein_coding - CCDS28116.1 - 114.0 0.0 0.0 1.0 44.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000023176 Cpn2 ENSMUST00000064856 ENSMUSP00000069318 TRANSLATION protein_coding - CCDS49819.1 1 547.0 0.0 1.0 9.0 173.1 0.0 3,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000026181 Ppm1f ENSMUST00000027373 ENSMUSP00000027373 TRANSLATION protein_coding - CCDS27991.1 1 452.0 6.0 3.785 2.9 235.7 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000026181 Ppm1f ENSMUST00000232247 ENSMUSP00000156361 TRANSLATION protein_coding stop - - 29.0 0.0 0.32 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000047261 Gap43 ENSMUST00000102817 ENSMUSP00000099881 TRANSLATION protein_coding - CCDS28177.1 1 227.0 0.0 0.0 0.4 290.6 0.0 -4,-5 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000047261 Gap43 ENSMUST00000125187 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022900 Ildr1 ENSMUST00000153802 - NO_TRANSLATION retained_intron ENSMUSG00000022900 Ildr1 ENSMUST00000089618 ENSMUSP00000087045 TRANSLATION protein_coding - CCDS70719.1 1 493.0 0.0 4.0 0.0 84.9 3.0 4,-1 0.4919 4 8.0 ALTERNATIVE:2 ENSMUSG00000022900 Ildr1 ENSMUST00000128084 - NO_TRANSLATION retained_intron ENSMUSG00000022900 Ildr1 ENSMUST00000119464 ENSMUSP00000112539 TRANSLATION protein_coding - CCDS49841.1 1 516.0 0.0 4.0 0.0 84.9 3.0 4,-1 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000022900 Ildr1 ENSMUST00000023617 ENSMUSP00000023617 TRANSLATION protein_coding - CCDS70718.1 1 537.0 0.0 4.0 0.3 84.9 3.0 4,-1 0.507 5 8.0 ALTERNATIVE:2 ENSMUSG00000003526 Prodh ENSMUST00000141635 ENSMUSP00000122889 TRANSLATION nonsense_mediated_decay start - 2 63.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0035 1 -2.0 MINOR ENSMUSG00000003526 Prodh ENSMUST00000123969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003526 Prodh ENSMUST00000232384 - NO_TRANSLATION retained_intron ENSMUSG00000003526 Prodh ENSMUST00000232554 ENSMUSP00000156221 TRANSLATION protein_coding start/stop - - 157.0 17.0 2.688 0.0 0.0 0.0 -4,-6 0.0098 6 -2.0 MINOR ENSMUSG00000003526 Prodh ENSMUST00000139861 ENSMUSP00000123223 TRANSLATION protein_coding - - 1 105.0 0.0 0.5 0.0 0.0 0.0 1,2 0.0528 1 0.0 MINOR ENSMUSG00000003526 Prodh ENSMUST00000132241 ENSMUSP00000118264 TRANSLATION protein_coding start - 2 115.0 0.0 1.4 0.0 0.0 0.0 -4,-2 0.009 1 -2.0 MINOR ENSMUSG00000003526 Prodh ENSMUST00000136776 ENSMUSP00000117597 TRANSLATION protein_coding - - 5 497.0 29.0 5.77 1.0 0.0 0.0 -4,-5 0.0939 19 10.2 MINOR ENSMUSG00000003526 Prodh ENSMUST00000232502 - NO_TRANSLATION retained_intron ENSMUSG00000003526 Prodh ENSMUST00000003620 ENSMUSP00000003620 TRANSLATION protein_coding - CCDS37278.1 1 599.0 29.0 6.67 7.8 0.0 0.0 1,2 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000003526 Prodh ENSMUST00000126087 ENSMUSP00000121736 TRANSLATION protein_coding start/stop - 5 244.0 28.0 4.77 0.0 0.0 0.0 -4,-5 0.0167 9 -2.0 MINOR ENSMUSG00000022824 Muc13 ENSMUST00000023520 ENSMUSP00000023520 TRANSLATION protein_coding - CCDS28134.1 1 573.0 0.0 0.225 0.0 0.0 1.0 3,-2 1.0 13 6.0 PRINCIPAL:1 ENSMUSG00000022824 Muc13 ENSMUST00000115044 ENSMUSP00000110696 TRANSLATION protein_coding - CCDS28134.1 1 573.0 0.0 0.225 0.0 0.0 1.0 3,-2 1.0 13 6.0 PRINCIPAL:1 ENSMUSG00000047141 Zfp654 ENSMUST00000052588 ENSMUSP00000052946 TRANSLATION protein_coding - - 1 571.0 18.0 0.0 0.0 19.4 0.0 -4,-5 0.0863 2 10.668 MINOR ENSMUSG00000047141 Zfp654 ENSMUST00000207826 ENSMUSP00000146656 TRANSLATION protein_coding - CCDS84250.1 5 1112.0 20.0 0.0 0.1 19.4 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000050239 Krtap24-1 ENSMUST00000052512 ENSMUSP00000052005 TRANSLATION protein_coding - CCDS49890.1 - 248.0 0.0 0.0 1.1 97.3 0.0 -4,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000022545 Ercc4 ENSMUST00000023206 ENSMUSP00000023206 TRANSLATION protein_coding - CCDS37256.1 1 917.0 3.0 8.58 9.2 76.2 0.0 -4,-5 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000022545 Ercc4 ENSMUST00000129049 ENSMUSP00000114639 TRANSLATION nonsense_mediated_decay start - 1 519.0 0.0 6.33 0.0 0.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000022545 Ercc4 ENSMUST00000138527 - NO_TRANSLATION retained_intron ENSMUSG00000022545 Ercc4 ENSMUST00000156393 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022545 Ercc4 ENSMUST00000141024 ENSMUSP00000118553 TRANSLATION nonsense_mediated_decay - - 1 393.0 0.0 6.75 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000071550 Cfap44 ENSMUST00000120049 ENSMUSP00000113908 TRANSLATION protein_coding - CCDS49854.1 5 1843.0 0.0 3.53 0.4 34.7 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000071550 Cfap44 ENSMUST00000127303 - NO_TRANSLATION retained_intron ENSMUSG00000071550 Cfap44 ENSMUST00000099742 ENSMUSP00000097331 TRANSLATION protein_coding - CCDS49854.1 5 1843.0 0.0 3.53 0.4 34.7 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000071550 Cfap44 ENSMUST00000147988 ENSMUSP00000156229 TRANSLATION non_stop_decay stop - 1 178.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000071550 Cfap44 ENSMUST00000136514 - NO_TRANSLATION retained_intron ENSMUSG00000071550 Cfap44 ENSMUST00000142648 - NO_TRANSLATION retained_intron ENSMUSG00000071550 Cfap44 ENSMUST00000128916 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022751 Nit2 ENSMUST00000231934 ENSMUSP00000156191 TRANSLATION nonsense_mediated_decay - - - 69.0 1.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022751 Nit2 ENSMUST00000232573 - NO_TRANSLATION retained_intron ENSMUSG00000022751 Nit2 ENSMUST00000231855 - NO_TRANSLATION retained_intron ENSMUSG00000022751 Nit2 ENSMUST00000023432 ENSMUSP00000023432 TRANSLATION protein_coding - CCDS37363.1 1 276.0 11.0 7.75 5.1 219.7 0.0 -4,-2 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000022751 Nit2 ENSMUST00000232662 - NO_TRANSLATION retained_intron ENSMUSG00000022751 Nit2 ENSMUST00000231423 ENSMUSP00000156334 TRANSLATION nonsense_mediated_decay start - - 148.0 10.0 4.5 0.0 130.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000022751 Nit2 ENSMUST00000231733 ENSMUSP00000155971 TRANSLATION protein_coding - - - 196.0 10.0 5.75 0.0 155.9 0.0 -4,-5 0.0 15 9.504 MINOR ENSMUSG00000091972 Tmem207 ENSMUST00000231658 - NO_TRANSLATION retained_intron ENSMUSG00000091972 Tmem207 ENSMUST00000165687 ENSMUSP00000127563 TRANSLATION protein_coding - CCDS49813.1 2 143.0 0.0 0.0 5.9 29.2 0.0 -3,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000035356 Nfkbiz ENSMUST00000114458 ENSMUSP00000110102 TRANSLATION protein_coding - CCDS28216.1 1 728.0 0.0 6.25 0.3 75.7 0.0 -4,-5 0.3823 1 6.5 MINOR ENSMUSG00000035356 Nfkbiz ENSMUST00000096026 ENSMUSP00000093726 TRANSLATION protein_coding - CCDS49869.1 1 629.0 0.0 6.25 2.8 71.6 0.0 -4,-7 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000035356 Nfkbiz ENSMUST00000139373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035356 Nfkbiz ENSMUST00000036273 ENSMUSP00000041173 TRANSLATION protein_coding - CCDS28216.1 1 728.0 0.0 6.25 0.3 75.7 0.0 -4,-5 0.3823 1 6.5 MINOR ENSMUSG00000035356 Nfkbiz ENSMUST00000114457 ENSMUSP00000110101 TRANSLATION protein_coding - CCDS49869.1 1 629.0 0.0 6.25 2.8 71.6 0.0 -4,-7 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000035356 Nfkbiz ENSMUST00000231463 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022676 Snai2 ENSMUST00000023356 ENSMUSP00000023356 TRANSLATION protein_coding - CCDS27974.1 1 269.0 19.0 1.6 28.7 115.6 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000022898 Vps26c ENSMUST00000125229 ENSMUSP00000156097 TRANSLATION nonsense_mediated_decay - - 5 135.0 0.0 0.61 0.0 99.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022898 Vps26c ENSMUST00000023615 ENSMUSP00000023615 TRANSLATION protein_coding - CCDS28349.1 1 297.0 0.0 1.505 34.2 254.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000022898 Vps26c ENSMUST00000232569 - NO_TRANSLATION retained_intron ENSMUSG00000022898 Vps26c ENSMUST00000142988 - NO_TRANSLATION retained_intron ENSMUSG00000022898 Vps26c ENSMUST00000133944 - NO_TRANSLATION retained_intron ENSMUSG00000022898 Vps26c ENSMUST00000127449 - NO_TRANSLATION retained_intron ENSMUSG00000033618 Map3k13 ENSMUST00000232240 ENSMUSP00000156202 TRANSLATION protein_coding - CCDS37294.1 - 959.0 18.0 5.6 7.3 217.2 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000033618 Map3k13 ENSMUST00000231988 ENSMUSP00000156075 TRANSLATION protein_coding - CCDS37294.1 - 959.0 18.0 5.6 7.3 217.2 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000033618 Map3k13 ENSMUST00000042065 ENSMUSP00000047388 TRANSLATION protein_coding - CCDS37294.1 1 959.0 18.0 5.6 7.3 217.2 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000090629 Or5k16 ENSMUST00000205883 ENSMUSP00000145802 TRANSLATION protein_coding stop - 2 135.0 0.0 1.0 0.0 85.1 7.0 -4,-6 0.0037 - -2.0 MINOR ENSMUSG00000090629 Or5k16 ENSMUST00000206168 ENSMUSP00000145601 TRANSLATION protein_coding - - 5 307.0 0.0 2.2 0.0 150.6 12.0 -4,-6 0.0213 - 9.426 MINOR ENSMUSG00000090629 Or5k16 ENSMUST00000171656 ENSMUSP00000128358 TRANSLATION protein_coding - CCDS28239.1 2 317.0 0.0 2.8 6.8 172.1 13.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000022983 Scaf4 ENSMUST00000231443 - NO_TRANSLATION retained_intron ENSMUSG00000022983 Scaf4 ENSMUST00000163419 ENSMUSP00000132250 TRANSLATION protein_coding - CCDS84260.1 1 1183.0 0.0 4.68 0.0 97.9 0.0 -4,-5 0.5838 8 8.0 ALTERNATIVE:2 ENSMUSG00000022983 Scaf4 ENSMUST00000039280 ENSMUSP00000044472 TRANSLATION protein_coding - CCDS37396.1 1 1209.0 0.0 4.68 0.0 97.9 0.0 -4,-5 1.0 9 8.0 PRINCIPAL:2 ENSMUSG00000022983 Scaf4 ENSMUST00000231572 - NO_TRANSLATION retained_intron ENSMUSG00000022983 Scaf4 ENSMUST00000231594 - NO_TRANSLATION retained_intron ENSMUSG00000022983 Scaf4 ENSMUST00000232371 ENSMUSP00000156174 TRANSLATION protein_coding - - - 1184.0 0.0 4.68 0.0 97.9 0.0 -4,-5 0.3106 8 8.0 ALTERNATIVE:2 ENSMUSG00000022983 Scaf4 ENSMUST00000231776 - NO_TRANSLATION retained_intron ENSMUSG00000022983 Scaf4 ENSMUST00000232000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022750 Klhl22 ENSMUST00000129199 ENSMUSP00000119191 TRANSLATION protein_coding stop - 2 117.0 0.0 2.6 0.0 69.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022750 Klhl22 ENSMUST00000120488 ENSMUSP00000112412 TRANSLATION protein_coding - CCDS49783.1 1 634.0 0.0 7.26 14.6 289.5 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000022750 Klhl22 ENSMUST00000165790 ENSMUSP00000127227 TRANSLATION protein_coding - CCDS49783.1 1 634.0 0.0 7.26 14.6 289.5 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000022750 Klhl22 ENSMUST00000129299 ENSMUSP00000156231 TRANSLATION protein_coding stop - 2 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022750 Klhl22 ENSMUST00000144116 - NO_TRANSLATION retained_intron ENSMUSG00000022750 Klhl22 ENSMUST00000126600 ENSMUSP00000118696 TRANSLATION protein_coding stop - 3 114.0 0.0 2.6 0.0 68.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022750 Klhl22 ENSMUST00000140306 ENSMUSP00000122145 TRANSLATION protein_coding stop - 2 122.0 0.0 2.6 0.0 73.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023791 Pigx ENSMUST00000155966 ENSMUSP00000114854 TRANSLATION protein_coding - CCDS49824.1 2 252.0 0.0 4.5 0.0 147.0 1.0 3,-2 0.6398 3 8.0 ALTERNATIVE:2 ENSMUSG00000023791 Pigx ENSMUST00000096109 ENSMUSP00000093819 TRANSLATION protein_coding - CCDS28113.2 1 254.0 0.0 4.5 0.0 147.0 1.0 3,-2 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000023791 Pigx ENSMUST00000147003 ENSMUSP00000120272 TRANSLATION nonsense_mediated_decay start - 5 60.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0017 - -2.0 MINOR ENSMUSG00000023791 Pigx ENSMUST00000143011 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023791 Pigx ENSMUST00000136643 ENSMUSP00000118256 TRANSLATION nonsense_mediated_decay start - 5 78.0 0.0 0.75 0.0 0.0 0.0 3,-2 0.0055 - -2.0 MINOR ENSMUSG00000023791 Pigx ENSMUST00000189013 ENSMUSP00000141122 TRANSLATION protein_coding start CCDS49824.1 2 252.0 0.0 4.5 0.0 147.0 1.0 3,-2 0.6398 3 -2.0 MINOR ENSMUSG00000023791 Pigx ENSMUST00000232321 ENSMUSP00000156144 TRANSLATION protein_coding - - - 150.0 0.0 2.75 1.0 98.0 1.0 -4,-5 0.0265 3 2.502 MINOR ENSMUSG00000023791 Pigx ENSMUST00000135677 - NO_TRANSLATION retained_intron ENSMUSG00000023791 Pigx ENSMUST00000151250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023791 Pigx ENSMUST00000144216 ENSMUSP00000122511 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 0.0 0.0 0.0 0.0 3,-4 0.0017 - -2.0 MINOR ENSMUSG00000023791 Pigx ENSMUST00000147688 ENSMUSP00000121801 TRANSLATION nonsense_mediated_decay start - 3 106.0 0.0 1.75 0.0 37.0 0.0 3,-2 0.0018 - -2.0 MINOR ENSMUSG00000023791 Pigx ENSMUST00000133584 ENSMUSP00000119754 TRANSLATION nonsense_mediated_decay start - 3 76.0 0.0 0.75 0.0 0.0 0.0 3,-2 0.0055 - -2.0 MINOR ENSMUSG00000022507 Hapstr1 ENSMUST00000229318 ENSMUSP00000155131 TRANSLATION protein_coding start - - 123.0 0.0 1.6 0.0 188.8 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000022507 Hapstr1 ENSMUST00000023150 ENSMUSP00000023150 TRANSLATION protein_coding - CCDS49756.1 1 275.0 0.0 1.864 13.5 344.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040732 Erg ENSMUST00000233664 ENSMUSP00000156927 TRANSLATION protein_coding - CCDS79492.1 - 456.0 0.0 3.86 1.5 212.5 0.0 -4,-5 0.4016 6 8.076 MINOR ENSMUSG00000040732 Erg ENSMUST00000121809 ENSMUSP00000113723 TRANSLATION protein_coding - - 5 455.0 0.0 3.56 6.2 212.5 0.0 -4,-5 0.2694 5 8.192 MINOR ENSMUSG00000040732 Erg ENSMUST00000233269 ENSMUSP00000156926 TRANSLATION protein_coding - CCDS79495.1 - 462.0 0.0 3.56 9.1 212.5 0.0 -4,-5 0.4773 5 8.636 MINOR ENSMUSG00000040732 Erg ENSMUST00000233881 ENSMUSP00000156669 TRANSLATION protein_coding - CCDS37411.1 - 486.0 0.0 3.86 23.8 212.5 0.0 -4,-5 0.9721 7 11.48 ALTERNATIVE:1 ENSMUSG00000040732 Erg ENSMUST00000122199 ENSMUSP00000114072 TRANSLATION protein_coding - CCDS79493.1 1 479.0 0.0 3.86 27.2 212.5 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:4 ENSMUSG00000040732 Erg ENSMUST00000113848 ENSMUSP00000109479 TRANSLATION protein_coding - CCDS79496.1 1 463.0 0.0 3.86 3.0 212.5 0.0 -4,-5 0.4295 6 8.304 MINOR ENSMUSG00000040732 Erg ENSMUST00000171646 ENSMUSP00000132766 TRANSLATION protein_coding - CCDS79494.1 1 439.0 0.0 3.56 1.3 212.5 0.0 -4,-5 0.1651 5 7.444 MINOR ENSMUSG00000040732 Erg ENSMUST00000176345 ENSMUSP00000135568 TRANSLATION protein_coding - - 5 387.0 0.0 3.86 1.0 212.5 0.0 -4,-5 0.1802 4 8.0 MINOR ENSMUSG00000071552 Tigit ENSMUST00000096065 ENSMUSP00000093770 TRANSLATION protein_coding - CCDS49852.1 1 241.0 0.0 1.2 6.7 41.4 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035790 Cep19 ENSMUST00000042869 ENSMUSP00000046587 TRANSLATION protein_coding - CCDS28114.1 5 163.0 0.0 2.0 31.8 190.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035790 Cep19 ENSMUST00000115168 ENSMUSP00000110822 TRANSLATION protein_coding - CCDS28114.1 1 163.0 0.0 2.0 31.8 190.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035790 Cep19 ENSMUST00000169186 ENSMUSP00000126083 TRANSLATION protein_coding - CCDS28114.1 2 163.0 0.0 2.0 31.8 190.5 0.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000045975 C2cd2 ENSMUST00000232572 - NO_TRANSLATION retained_intron ENSMUSG00000045975 C2cd2 ENSMUST00000231575 ENSMUSP00000156013 TRANSLATION protein_coding start/stop - - 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000045975 C2cd2 ENSMUST00000231903 ENSMUSP00000156211 TRANSLATION protein_coding start/stop - - 225.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 3 -2.0 MINOR ENSMUSG00000045975 C2cd2 ENSMUST00000231332 - NO_TRANSLATION retained_intron ENSMUSG00000045975 C2cd2 ENSMUST00000231953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045975 C2cd2 ENSMUST00000232165 ENSMUSP00000156005 TRANSLATION protein_coding,RT stop - - 148.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045975 C2cd2 ENSMUST00000232343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045975 C2cd2 ENSMUST00000232063 - NO_TRANSLATION retained_intron ENSMUSG00000045975 C2cd2 ENSMUST00000170757 ENSMUSP00000127368 TRANSLATION protein_coding - CCDS28361.1 1 696.0 0.0 1.032 2.3 21.6 0.0 -1,-4 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000045975 C2cd2 ENSMUST00000232542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039851 4932438H23Rik ENSMUST00000035689 ENSMUSP00000040111 TRANSLATION protein_coding - CCDS28322.1 1 230.0 0.0 0.0 1.4 331.6 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000039851 4932438H23Rik ENSMUST00000146047 ENSMUSP00000122640 TRANSLATION protein_coding stop - 3 136.0 0.0 0.0 0.0 195.7 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000039851 4932438H23Rik ENSMUST00000114076 ENSMUSP00000109710 TRANSLATION protein_coding - CCDS28322.1 1 230.0 0.0 0.0 1.4 331.6 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000046961 Gpr156 ENSMUST00000061274 ENSMUSP00000055958 TRANSLATION protein_coding - CCDS28162.1 1 798.0 0.0 2.72 0.8 138.8 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022501 Prm1 ENSMUST00000230568 ENSMUSP00000155855 TRANSLATION protein_coding - CCDS27956.1 - 51.0 0.0 0.0 0.0 42.7 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000022501 Prm1 ENSMUST00000023144 ENSMUSP00000023144 TRANSLATION protein_coding - CCDS27956.1 1 51.0 0.0 0.0 0.0 42.7 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000068182 Or5ac21 ENSMUST00000089305 ENSMUSP00000086719 TRANSLATION protein_coding start - - 307.0 0.0 1.0 10.8 158.1 7.0 -4,-6 0.8211 - -2.0 MINOR ENSMUSG00000068182 Or5ac21 ENSMUST00000215893 ENSMUSP00000149906 TRANSLATION protein_coding - CCDS79469.1 5 306.0 0.0 1.0 10.8 158.1 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022802 Lmln ENSMUST00000155920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022802 Lmln ENSMUST00000140504 - NO_TRANSLATION retained_intron ENSMUSG00000022802 Lmln ENSMUST00000153549 - NO_TRANSLATION retained_intron ENSMUSG00000022802 Lmln ENSMUST00000023497 ENSMUSP00000023497 TRANSLATION protein_coding - CCDS28127.1 1 681.0 4.0 -1.141 0.0 0.0 0.0 1,-3 1.0 12 4.0 PRINCIPAL:1 ENSMUSG00000022542 Septin12 ENSMUST00000229321 ENSMUSP00000155459 TRANSLATION protein_coding - - - 278.0 16.0 6.15 0.1 279.9 0.0 -4,-2 0.0021 2 10.992 MINOR ENSMUSG00000022542 Septin12 ENSMUST00000170323 ENSMUSP00000131062 TRANSLATION protein_coding - CCDS27929.1 1 317.0 16.0 6.15 0.0 279.9 0.0 -4,-2 0.0206 2 10.992 MINOR ENSMUSG00000022542 Septin12 ENSMUST00000230878 - NO_TRANSLATION retained_intron ENSMUSG00000022542 Septin12 ENSMUST00000230362 ENSMUSP00000154901 TRANSLATION protein_coding - - - 357.0 16.0 7.58 0.4 349.0 0.0 -4,-2 0.812 3 18.0 PRINCIPAL:1 ENSMUSG00000052516 Robo2 ENSMUST00000226478 ENSMUSP00000154353 TRANSLATION protein_coding - - - 1512.0 0.0 15.25 4.4 424.7 2.0 1,-2 0.6459 32 13.458 MINOR ENSMUSG00000052516 Robo2 ENSMUST00000231889 ENSMUSP00000155911 TRANSLATION protein_coding start - - 793.0 0.0 3.0 0.0 44.1 2.0 -4,-5 0.0053 12 -2.0 MINOR ENSMUSG00000052516 Robo2 ENSMUST00000156010 - NO_TRANSLATION retained_intron ENSMUSG00000052516 Robo2 ENSMUST00000227347 ENSMUSP00000154010 TRANSLATION protein_coding stop - - 1065.0 0.0 15.25 0.0 424.7 2.0 1,-2 0.293 26 -2.0 MINOR ENSMUSG00000052516 Robo2 ENSMUST00000231426 ENSMUSP00000156156 TRANSLATION protein_coding start/stop - - 219.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 4 -2.0 MINOR ENSMUSG00000052516 Robo2 ENSMUST00000147408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052516 Robo2 ENSMUST00000117200 ENSMUSP00000113795 TRANSLATION protein_coding - - 5 1377.0 0.0 15.25 8.0 424.7 2.0 1,-2 1.0 29 15.0 PRINCIPAL:1 ENSMUSG00000052516 Robo2 ENSMUST00000116586 ENSMUSP00000112285 TRANSLATION protein_coding start - 5 207.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.001 3 -2.0 MINOR ENSMUSG00000052516 Robo2 ENSMUST00000117785 ENSMUSP00000112776 TRANSLATION protein_coding - CCDS49886.1 1 1508.0 0.0 15.25 4.4 424.7 2.0 1,-2 0.7974 32 13.458 MINOR ENSMUSG00000052516 Robo2 ENSMUST00000138852 ENSMUSP00000156330 TRANSLATION protein_coding start - 3 149.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000052516 Robo2 ENSMUST00000137420 ENSMUSP00000155941 TRANSLATION protein_coding start/stop - 2 178.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000052516 Robo2 ENSMUST00000149114 - NO_TRANSLATION retained_intron ENSMUSG00000052516 Robo2 ENSMUST00000140062 - NO_TRANSLATION retained_intron ENSMUSG00000041617 Ccdc74a ENSMUST00000183101 - NO_TRANSLATION retained_intron ENSMUSG00000041617 Ccdc74a ENSMUST00000182671 ENSMUSP00000138160 TRANSLATION protein_coding start - 2 93.0 0.0 0.0 0.0 76.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041617 Ccdc74a ENSMUST00000182822 - NO_TRANSLATION retained_intron ENSMUSG00000041617 Ccdc74a ENSMUST00000182368 ENSMUSP00000138262 TRANSLATION nonsense_mediated_decay - - 5 148.0 0.0 0.0 0.0 76.5 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000041617 Ccdc74a ENSMUST00000183279 ENSMUSP00000138498 TRANSLATION nonsense_mediated_decay start - 3 81.0 0.0 0.0 0.0 67.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041617 Ccdc74a ENSMUST00000182526 - NO_TRANSLATION retained_intron ENSMUSG00000041617 Ccdc74a ENSMUST00000182976 ENSMUSP00000138340 TRANSLATION nonsense_mediated_decay start - 3 106.0 0.0 0.0 0.0 76.2 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000041617 Ccdc74a ENSMUST00000056962 ENSMUSP00000049541 TRANSLATION protein_coding - CCDS49782.1 5 364.0 0.0 0.0 0.4 231.4 0.0 -3,1 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000041617 Ccdc74a ENSMUST00000182344 ENSMUSP00000138131 TRANSLATION protein_coding start - 3 110.0 0.0 0.0 0.0 76.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041617 Ccdc74a ENSMUST00000182117 ENSMUSP00000138657 TRANSLATION protein_coding start - 3 126.0 0.0 0.0 0.0 76.5 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000062609 Kcnj15 ENSMUST00000113856 ENSMUSP00000109487 TRANSLATION protein_coding - CCDS37410.1 3 375.0 0.0 2.33 17.8 456.1 5.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000062609 Kcnj15 ENSMUST00000113862 ENSMUSP00000109493 TRANSLATION protein_coding - CCDS28351.1 1 402.0 0.0 2.33 0.8 456.1 5.0 -4,-5 0.3858 2 12.0 MINOR ENSMUSG00000062609 Kcnj15 ENSMUST00000113854 ENSMUSP00000109485 TRANSLATION protein_coding - CCDS37410.1 1 375.0 0.0 2.33 17.8 456.1 5.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000062609 Kcnj15 ENSMUST00000138329 ENSMUSP00000117744 TRANSLATION protein_coding stop - 2 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062609 Kcnj15 ENSMUST00000113855 ENSMUSP00000109486 TRANSLATION protein_coding - CCDS37410.1 1 375.0 0.0 2.33 17.8 456.1 5.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000062609 Kcnj15 ENSMUST00000140222 ENSMUSP00000114449 TRANSLATION protein_coding stop - 5 53.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000062609 Kcnj15 ENSMUST00000152516 ENSMUSP00000155871 TRANSLATION protein_coding stop - 3 2.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0211 - -2.0 MINOR ENSMUSG00000062609 Kcnj15 ENSMUST00000113861 ENSMUSP00000109492 TRANSLATION protein_coding - CCDS28351.1 1 402.0 0.0 2.33 0.8 456.1 5.0 -4,-5 0.3858 2 12.0 MINOR ENSMUSG00000062609 Kcnj15 ENSMUST00000113859 ENSMUSP00000109490 TRANSLATION protein_coding - CCDS28351.1 1 402.0 0.0 2.33 0.8 456.1 5.0 -4,-5 0.3858 2 12.0 MINOR ENSMUSG00000062609 Kcnj15 ENSMUST00000113858 ENSMUSP00000109489 TRANSLATION protein_coding - CCDS37410.1 5 375.0 0.0 2.33 17.8 456.1 5.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000062609 Kcnj15 ENSMUST00000125847 ENSMUSP00000114646 TRANSLATION protein_coding stop - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000062609 Kcnj15 ENSMUST00000037154 ENSMUSP00000045218 TRANSLATION protein_coding - CCDS28351.1 1 402.0 0.0 2.33 0.8 456.1 5.0 -4,-5 0.3858 2 12.0 MINOR ENSMUSG00000062609 Kcnj15 ENSMUST00000134166 ENSMUSP00000118992 TRANSLATION protein_coding stop - 3 173.0 0.0 1.33 0.0 172.2 3.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000062245 Or2aj5 ENSMUST00000218837 ENSMUSP00000151806 TRANSLATION protein_coding - CCDS28038.1 - 313.0 0.0 1.0 11.4 147.7 8.0 -4,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000062245 Or2aj5 ENSMUST00000206562 ENSMUSP00000145775 TRANSLATION protein_coding - - 5 312.0 0.0 1.0 7.9 147.7 8.0 -4,-6 0.7532 - 9.989 ALTERNATIVE:1 ENSMUSG00000062245 Or2aj5 ENSMUST00000078603 ENSMUSP00000077674 TRANSLATION protein_coding - - - 312.0 0.0 1.0 7.9 147.7 8.0 -4,-6 0.7532 - 9.989 ALTERNATIVE:1 ENSMUSG00000050272 Dscam ENSMUST00000232829 ENSMUSP00000156602 TRANSLATION protein_coding start - - 371.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 1 -2.0 MINOR ENSMUSG00000050272 Dscam ENSMUST00000056102 ENSMUSP00000056040 TRANSLATION protein_coding - CCDS37415.1 1 2013.0 0.0 15.59 14.7 613.0 0.0 1,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000022889 Mrpl39 ENSMUST00000133901 - NO_TRANSLATION retained_intron ENSMUSG00000022889 Mrpl39 ENSMUST00000116584 ENSMUSP00000112283 TRANSLATION protein_coding - CCDS57035.1 1 336.0 0.0 7.3 8.3 0.0 0.0 -4,0 1.0 16 9.0 PRINCIPAL:1 ENSMUSG00000004071 Cdip1 ENSMUST00000118703 ENSMUSP00000113889 TRANSLATION protein_coding - CCDS27925.1 1 208.0 3.0 1.2 13.0 77.1 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000004071 Cdip1 ENSMUST00000117713 ENSMUSP00000113618 TRANSLATION protein_coding - - 1 191.0 3.0 1.2 0.0 77.1 0.0 -4,-5 0.0299 2 15.0 MINOR ENSMUSG00000004071 Cdip1 ENSMUST00000152667 - NO_TRANSLATION retained_intron ENSMUSG00000004071 Cdip1 ENSMUST00000229452 - NO_TRANSLATION retained_intron ENSMUSG00000004071 Cdip1 ENSMUST00000140187 - NO_TRANSLATION retained_intron ENSMUSG00000004071 Cdip1 ENSMUST00000147225 ENSMUSP00000120143 TRANSLATION protein_coding start - 3 164.0 2.0 0.2 0.0 33.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004071 Cdip1 ENSMUST00000004173 ENSMUSP00000004173 TRANSLATION protein_coding - CCDS27925.1 1 208.0 3.0 1.2 13.0 77.1 0.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000052363 Zdhhc19 ENSMUST00000232434 - NO_TRANSLATION retained_intron ENSMUSG00000052363 Zdhhc19 ENSMUST00000160832 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052363 Zdhhc19 ENSMUST00000064192 ENSMUSP00000070727 TRANSLATION protein_coding - CCDS28122.1 1 347.0 10.0 3.273 0.0 107.7 5.0 -4,-7 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000052363 Zdhhc19 ENSMUST00000231293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052363 Zdhhc19 ENSMUST00000231510 ENSMUSP00000156284 TRANSLATION protein_coding - - - 251.0 10.0 2.075 0.0 107.7 3.0 -4,-2 0.0507 1 15.606 MINOR ENSMUSG00000004069 Dnaja3 ENSMUST00000115854 ENSMUSP00000111520 TRANSLATION protein_coding - CCDS49748.1 1 453.0 8.0 5.725 12.5 228.0 0.0 -4,0 1.0 8 17.0 PRINCIPAL:4 ENSMUSG00000004069 Dnaja3 ENSMUST00000229529 ENSMUSP00000155588 TRANSLATION protein_coding - - - 429.0 4.0 4.725 0.0 174.1 0.0 -4,0 0.003 8 8.002 MINOR ENSMUSG00000004069 Dnaja3 ENSMUST00000060067 ENSMUSP00000053842 TRANSLATION protein_coding - CCDS27922.1 1 480.0 8.0 5.725 11.4 228.0 0.0 -4,0 0.9193 8 16.712 ALTERNATIVE:1 ENSMUSG00000004069 Dnaja3 ENSMUST00000144815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004069 Dnaja3 ENSMUST00000138495 - NO_TRANSLATION retained_intron ENSMUSG00000000386 Mx1 ENSMUST00000238262 ENSMUSP00000159528 TRANSLATION protein_coding - - - 299.0 11.0 3.93 0.0 185.3 0.0 -4,-5 0.0025 1 6.624 MINOR ENSMUSG00000000386 Mx1 ENSMUST00000231995 - NO_TRANSLATION retained_intron ENSMUSG00000000386 Mx1 ENSMUST00000231455 - NO_TRANSLATION retained_intron ENSMUSG00000000386 Mx1 ENSMUST00000247756 - NO_TRANSLATION protein_coding_LoF ENSMUSG00000000386 Mx1 ENSMUST00000247757 - NO_TRANSLATION protein_coding_LoF ENSMUSG00000000386 Mx1 ENSMUST00000155233 ENSMUSP00000159526 TRANSLATION nonsense_mediated_decay - - 1 309.0 14.0 5.75 0.0 259.2 0.0 -4,-5 0.0455 1 -2.0 MINOR ENSMUSG00000000386 Mx1 ENSMUST00000238205 ENSMUSP00000159527 TRANSLATION nonsense_mediated_decay - - - 288.0 14.0 5.0 0.0 231.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000386 Mx1 ENSMUST00000135184 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000386 Mx1 ENSMUST00000231461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000386 Mx1 ENSMUST00000113768 ENSMUSP00000109397 TRANSLATION protein_coding - - 1 397.0 11.0 5.93 0.0 274.9 0.0 -4,-5 0.7611 1 16.002 PRINCIPAL:1 ENSMUSG00000022766 Serpind1 ENSMUST00000231884 ENSMUSP00000156303 TRANSLATION protein_coding - CCDS28000.1 - 478.0 0.0 4.0 3.1 359.4 0.0 2,-2 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000022766 Serpind1 ENSMUST00000023450 ENSMUSP00000023450 TRANSLATION protein_coding - CCDS28000.1 1 478.0 0.0 4.0 3.1 359.4 0.0 2,-2 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000022881 Rfc4 ENSMUST00000147321 - NO_TRANSLATION retained_intron ENSMUSG00000022881 Rfc4 ENSMUST00000133847 ENSMUSP00000115479 TRANSLATION protein_coding stop - 5 233.0 14.0 5.15 0.0 64.2 0.0 -4,-7 0.0003 7 -2.0 MINOR ENSMUSG00000022881 Rfc4 ENSMUST00000115337 ENSMUSP00000110994 TRANSLATION nonsense_mediated_decay - - 5 92.0 4.0 1.19 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022881 Rfc4 ENSMUST00000023598 ENSMUSP00000023598 TRANSLATION protein_coding - CCDS37301.1 1 364.0 17.0 8.98 35.7 136.5 0.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000022881 Rfc4 ENSMUST00000115338 ENSMUSP00000110995 TRANSLATION protein_coding - - 1 370.0 17.0 7.9 0.0 99.6 0.0 -4,-7 0.0265 8 13.626 MINOR ENSMUSG00000041774 Ydjc ENSMUST00000231502 - NO_TRANSLATION retained_intron ENSMUSG00000041774 Ydjc ENSMUST00000069064 ENSMUSP00000069864 TRANSLATION protein_coding - CCDS27996.1 1 310.0 0.0 4.75 0.8 222.1 0.0 -4,-7 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000041774 Ydjc ENSMUST00000232344 ENSMUSP00000156006 TRANSLATION protein_coding - - - 158.0 0.0 2.75 0.0 154.0 0.0 -4,-7 0.0 3 3.912 MINOR ENSMUSG00000041774 Ydjc ENSMUST00000231493 ENSMUSP00000156374 TRANSLATION nonsense_mediated_decay - - - 132.0 0.0 2.0 0.0 92.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000041774 Ydjc ENSMUST00000231726 ENSMUSP00000156244 TRANSLATION protein_coding - - - 271.0 0.0 3.75 0.0 176.1 0.0 -4,-7 0.0006 5 7.242 MINOR ENSMUSG00000041774 Ydjc ENSMUST00000231539 - NO_TRANSLATION retained_intron ENSMUSG00000041774 Ydjc ENSMUST00000231708 ENSMUSP00000156343 TRANSLATION nonsense_mediated_decay - - - 132.0 0.0 2.0 0.0 92.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000041774 Ydjc ENSMUST00000231975 - NO_TRANSLATION retained_intron ENSMUSG00000041774 Ydjc ENSMUST00000232479 ENSMUSP00000156140 TRANSLATION protein_coding - - - 285.0 0.0 3.75 0.0 176.1 0.0 -4,-7 0.0006 5 7.242 MINOR ENSMUSG00000022723 Crybg3 ENSMUST00000044604 ENSMUSP00000037682 TRANSLATION protein_coding - - 1 1238.0 17.0 7.749 0.0 388.5 0.0 -4,-5 1.0 27 14.0 PRINCIPAL:2 ENSMUSG00000022723 Crybg3 ENSMUST00000139989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022723 Crybg3 ENSMUST00000129350 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022723 Crybg3 ENSMUST00000172910 ENSMUSP00000156047 TRANSLATION protein_coding - - 5 2952.0 17.0 7.749 0.0 386.9 0.0 -4,0 0.49 70 14.0 ALTERNATIVE:2 ENSMUSG00000022723 Crybg3 ENSMUST00000129762 - NO_TRANSLATION retained_intron ENSMUSG00000022723 Crybg3 ENSMUST00000232544 ENSMUSP00000156062 TRANSLATION protein_coding start/stop - - 254.0 16.0 2.466 0.0 140.4 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022704 Qtrt2 ENSMUST00000146343 ENSMUSP00000159054 TRANSLATION nonsense_mediated_decay - - 1 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022704 Qtrt2 ENSMUST00000124674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022704 Qtrt2 ENSMUST00000151963 - NO_TRANSLATION retained_intron ENSMUSG00000022704 Qtrt2 ENSMUST00000023387 ENSMUSP00000023387 TRANSLATION protein_coding - CCDS37344.1 1 345.0 4.0 1.607 0.8 189.2 0.0 -4,-6 0.0265 6 12.526 MINOR ENSMUSG00000022704 Qtrt2 ENSMUST00000156568 ENSMUSP00000159132 TRANSLATION nonsense_mediated_decay - - 1 271.0 0.0 1.875 0.0 64.9 0.0 -4,-6 0.0029 6 -2.0 MINOR ENSMUSG00000022704 Qtrt2 ENSMUST00000144626 - NO_TRANSLATION retained_intron ENSMUSG00000022704 Qtrt2 ENSMUST00000239112 ENSMUSP00000158885 TRANSLATION protein_coding - - - 416.0 4.0 2.007 14.5 227.2 0.0 -4,-6 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000022704 Qtrt2 ENSMUST00000131360 ENSMUSP00000159013 TRANSLATION nonsense_mediated_decay - - 5 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022704 Qtrt2 ENSMUST00000134792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022704 Qtrt2 ENSMUST00000143858 - NO_TRANSLATION retained_intron ENSMUSG00000061080 Lsamp ENSMUST00000187695 ENSMUSP00000139667 TRANSLATION protein_coding - - 1 355.0 0.0 7.08 0.4 165.9 0.0 3,-2 0.1909 11 12.0 MINOR ENSMUSG00000061080 Lsamp ENSMUST00000191610 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061080 Lsamp ENSMUST00000133853 ENSMUSP00000139655 TRANSLATION protein_coding start - 3 99.0 0.0 2.348 0.0 54.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000061080 Lsamp ENSMUST00000189229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061080 Lsamp ENSMUST00000099761 ENSMUSP00000097349 TRANSLATION protein_coding - CCDS84234.1 1 338.0 0.0 6.63 24.0 165.9 0.0 0,-3 1.0 11 15.1 PRINCIPAL:1 ENSMUSG00000061080 Lsamp ENSMUST00000189358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061080 Lsamp ENSMUST00000078873 ENSMUSP00000077913 TRANSLATION protein_coding - - 1 341.0 0.0 6.63 0.0 165.9 0.0 0,-3 0.1047 11 11.1 MINOR ENSMUSG00000061080 Lsamp ENSMUST00000189829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061080 Lsamp ENSMUST00000145951 ENSMUSP00000115823 TRANSLATION protein_coding start - 3 139.0 0.0 3.148 0.0 65.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000061080 Lsamp ENSMUST00000187185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061751 Kalrn ENSMUST00000156668 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061751 Kalrn ENSMUST00000137216 - NO_TRANSLATION retained_intron ENSMUSG00000061751 Kalrn ENSMUST00000089655 ENSMUSP00000087084 TRANSLATION protein_coding - - 5 1663.0 0.0 9.506 5.3 327.1 0.0 -4,-7 0.7875 22 2.0 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000151491 ENSMUSP00000123416 TRANSLATION protein_coding start/stop - 5 1403.0 0.0 9.506 0.0 289.0 0.0 -4,-7 0.0279 18 -2.0 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000124430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061751 Kalrn ENSMUST00000114973 ENSMUSP00000110624 TRANSLATION protein_coding - - 5 1295.0 18.0 13.04 0.0 578.3 0.0 -4,-5 0.0326 22 6.0 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000231657 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061751 Kalrn ENSMUST00000132002 - NO_TRANSLATION retained_intron ENSMUSG00000061751 Kalrn ENSMUST00000114949 ENSMUSP00000110599 TRANSLATION protein_coding - - 5 1013.0 0.0 8.56 1.0 228.2 0.0 -4,-5 0.0733 10 0.0 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000114960 ENSMUSP00000110611 TRANSLATION protein_coding - CCDS49836.1 1 1654.0 0.0 9.506 5.3 334.2 0.0 -4,-7 0.9136 23 2.0 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000114953 ENSMUSP00000110603 TRANSLATION protein_coding - - 1 1022.0 0.0 8.56 1.0 221.1 0.0 -4,-5 0.0741 9 0.0 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000076810 ENSMUSP00000076088 TRANSLATION protein_coding - - 5 2964.0 18.0 23.546 0.0 976.8 0.0 -4,-5 1.0 44 18.0 PRINCIPAL:1 ENSMUSG00000061751 Kalrn ENSMUST00000232157 ENSMUSP00000156147 TRANSLATION protein_coding - - - 673.0 0.0 8.05 4.3 222.8 0.0 -4,-5 0.5965 16 1.534 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000114966 ENSMUSP00000110617 TRANSLATION protein_coding - - 5 705.0 0.0 8.05 5.0 264.2 0.0 -4,-5 0.693 18 1.86 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000114963 ENSMUSP00000110614 TRANSLATION protein_coding - - 5 739.0 0.0 9.05 0.0 289.5 0.0 -4,-6 0.0043 16 0.0 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000114947 ENSMUSP00000110597 TRANSLATION protein_coding - - 5 823.0 0.0 5.96 0.0 194.1 0.0 -4,-5 0.0023 7 0.0 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000142817 ENSMUSP00000116188 TRANSLATION protein_coding start - 5 2371.0 0.0 18.556 0.0 662.7 0.0 -4,-5 0.1411 39 -2.0 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000114954 ENSMUSP00000110604 TRANSLATION protein_coding - - 1 1022.0 0.0 8.56 1.0 221.1 0.0 -4,-5 0.0741 9 0.0 MINOR ENSMUSG00000061751 Kalrn ENSMUST00000132569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061751 Kalrn ENSMUST00000114961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061751 Kalrn ENSMUST00000114964 ENSMUSP00000110615 TRANSLATION protein_coding - - 5 674.0 0.0 8.05 4.3 222.8 0.0 -4,-5 0.5965 17 1.534 MINOR ENSMUSG00000022822 Abcc5 ENSMUST00000148003 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022822 Abcc5 ENSMUST00000096199 ENSMUSP00000093913 TRANSLATION protein_coding - CCDS28046.1 1 208.0 0.0 0.98 9.1 0.0 2.0 -4,-5 0.3708 1 1.704 MINOR ENSMUSG00000022822 Abcc5 ENSMUST00000134413 - NO_TRANSLATION retained_intron ENSMUSG00000022822 Abcc5 ENSMUST00000137985 - NO_TRANSLATION retained_intron ENSMUSG00000022822 Abcc5 ENSMUST00000079158 ENSMUSP00000078158 TRANSLATION protein_coding - CCDS28045.1 1 1436.0 22.0 16.842 20.0 355.5 15.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000022822 Abcc5 ENSMUST00000231522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022822 Abcc5 ENSMUST00000127582 - NO_TRANSLATION retained_intron ENSMUSG00000022822 Abcc5 ENSMUST00000134962 - NO_TRANSLATION retained_intron ENSMUSG00000022822 Abcc5 ENSMUST00000128978 - NO_TRANSLATION retained_intron ENSMUSG00000022822 Abcc5 ENSMUST00000077867 ENSMUSP00000077031 TRANSLATION protein_coding stop - 1 512.0 1.0 3.68 0.0 64.0 9.0 -4,-5 0.0022 5 -2.0 MINOR ENSMUSG00000022822 Abcc5 ENSMUST00000150340 - NO_TRANSLATION retained_intron ENSMUSG00000022822 Abcc5 ENSMUST00000232044 ENSMUSP00000156205 TRANSLATION nonsense_mediated_decay start - - 136.0 0.0 1.6 0.0 29.2 4.0 -4,-2 0.0022 2 -2.0 MINOR ENSMUSG00000059657 Stfa2l1 ENSMUST00000079184 ENSMUSP00000078181 TRANSLATION protein_coding - CCDS28149.1 1 103.0 0.0 2.75 1.9 78.3 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000037972 Snn ENSMUST00000089011 ENSMUSP00000086405 TRANSLATION protein_coding - CCDS37255.1 1 88.0 0.0 1.0 33.9 136.3 1.0 -2,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000037972 Snn ENSMUST00000228962 ENSMUSP00000154936 TRANSLATION protein_coding - CCDS37255.1 - 88.0 0.0 1.0 33.9 136.3 1.0 -2,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000091712 Sec14l5 ENSMUST00000165810 ENSMUSP00000128063 TRANSLATION protein_coding - CCDS49752.1 1 696.0 0.0 6.01 1.3 326.2 0.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000091712 Sec14l5 ENSMUST00000230616 ENSMUSP00000155164 TRANSLATION protein_coding - CCDS49752.1 - 696.0 0.0 6.01 1.3 326.2 0.0 -4,-7 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000022791 Tnk2 ENSMUST00000115125 ENSMUSP00000110778 TRANSLATION protein_coding - CCDS49828.1 1 1008.0 19.0 10.11 1.0 581.7 0.0 -4,-6 0.4674 13 14.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000152361 ENSMUSP00000125905 TRANSLATION protein_coding stop - 5 311.0 0.0 1.396 0.0 159.6 0.0 -4,-7 0.002 1 -2.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000115121 ENSMUSP00000110774 TRANSLATION protein_coding stop - 3 264.0 0.0 0.0 0.0 42.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000239117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022791 Tnk2 ENSMUST00000232650 - NO_TRANSLATION retained_intron ENSMUSG00000022791 Tnk2 ENSMUST00000168506 - NO_TRANSLATION retained_intron ENSMUSG00000022791 Tnk2 ENSMUST00000238891 ENSMUSP00000159113 TRANSLATION protein_coding - - - 1047.0 19.0 10.11 1.4 581.7 0.0 -4,-7 0.3803 13 14.132 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000115124 ENSMUSP00000110777 TRANSLATION protein_coding - CCDS37313.1 1 1055.0 19.0 10.11 4.8 581.7 0.0 -4,-6 1.0 13 15.246 ALTERNATIVE:1 ENSMUSG00000022791 Tnk2 ENSMUST00000238856 ENSMUSP00000158905 TRANSLATION protein_coding - - - 1072.0 19.0 10.11 7.1 581.7 0.0 -4,0 0.9827 14 16.0 PRINCIPAL:4 ENSMUSG00000022791 Tnk2 ENSMUST00000115122 ENSMUSP00000110775 TRANSLATION protein_coding stop - 5 27.0 0.0 0.0 0.0 42.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000164358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022791 Tnk2 ENSMUST00000238799 ENSMUSP00000159006 TRANSLATION nonsense_mediated_decay start - - 52.0 2.0 1.0 0.0 28.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000145627 ENSMUSP00000152338 TRANSLATION protein_coding stop - 3 97.0 0.0 2.18 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000115126 ENSMUSP00000110779 TRANSLATION protein_coding - - 5 1038.0 19.0 10.11 5.7 581.7 0.0 -4,-6 0.8632 13 15.54 ALTERNATIVE:1 ENSMUSG00000022791 Tnk2 ENSMUST00000238806 ENSMUSP00000159023 TRANSLATION protein_coding - - - 1040.0 19.0 10.11 6.4 581.7 0.0 -4,0 0.8817 14 15.77 ALTERNATIVE:1 ENSMUSG00000022791 Tnk2 ENSMUST00000150383 ENSMUSP00000158981 TRANSLATION protein_coding stop - 3 95.0 0.0 2.18 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000115120 ENSMUSP00000110773 TRANSLATION protein_coding - CCDS84224.1 1 550.0 0.0 0.1 0.0 133.4 0.0 -4,-5 0.0297 4 0.2 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000239161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022791 Tnk2 ENSMUST00000131238 ENSMUSP00000129382 TRANSLATION protein_coding stop - 5 98.0 0.0 0.0 0.0 42.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000124585 ENSMUSP00000152549 TRANSLATION protein_coding stop - 3 44.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000238815 ENSMUSP00000159024 TRANSLATION nonsense_mediated_decay start - - 64.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000156614 ENSMUSP00000158107 TRANSLATION protein_coding start/stop - 2 290.0 11.0 4.83 0.0 241.8 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000022791 Tnk2 ENSMUST00000115123 ENSMUSP00000110776 TRANSLATION protein_coding - - 5 1040.0 19.0 10.11 5.7 581.7 0.0 -4,-6 0.8646 13 15.54 ALTERNATIVE:1 ENSMUSG00000022791 Tnk2 ENSMUST00000137044 ENSMUSP00000159002 TRANSLATION nonsense_mediated_decay start - 5 211.0 19.0 3.1 0.0 161.6 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000050783 Htr1f ENSMUST00000063076 ENSMUSP00000063136 TRANSLATION protein_coding - CCDS28267.1 1 366.0 0.0 0.48 24.6 244.7 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040666 Sh3bgr ENSMUST00000145069 ENSMUSP00000116241 TRANSLATION protein_coding start - 5 105.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040666 Sh3bgr ENSMUST00000166952 ENSMUSP00000129010 TRANSLATION protein_coding stop - 5 135.0 0.0 2.74 3.0 158.5 0.0 -4,-7 0.8211 8 -2.0 MINOR ENSMUSG00000040666 Sh3bgr ENSMUST00000233577 ENSMUSP00000156558 TRANSLATION protein_coding start - - 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040666 Sh3bgr ENSMUST00000157060 ENSMUSP00000116607 TRANSLATION protein_coding start - 5 95.0 0.0 0.53 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000040666 Sh3bgr ENSMUST00000048770 ENSMUSP00000038110 TRANSLATION protein_coding - CCDS28355.1 1 214.0 0.0 2.94 0.0 158.5 0.0 -4,-7 1.0 11 8.0 PRINCIPAL:2 ENSMUSG00000040666 Sh3bgr ENSMUST00000171181 ENSMUSP00000126581 TRANSLATION protein_coding - CCDS28355.1 1 214.0 0.0 2.94 0.0 158.5 0.0 -4,-7 1.0 11 8.0 PRINCIPAL:2 ENSMUSG00000040666 Sh3bgr ENSMUST00000129904 ENSMUSP00000116740 TRANSLATION protein_coding stop - 3 180.0 0.0 2.08 0.0 134.0 0.0 -4,-5 0.0013 8 -2.0 MINOR ENSMUSG00000040666 Sh3bgr ENSMUST00000132424 ENSMUSP00000120614 TRANSLATION protein_coding start - 5 151.0 0.0 2.61 0.0 140.6 0.0 -4,-5 0.0015 7 -2.0 MINOR ENSMUSG00000040666 Sh3bgr ENSMUST00000233945 ENSMUSP00000156748 TRANSLATION protein_coding - - - 299.0 0.0 2.74 0.0 158.5 0.0 -4,-7 0.0138 6 7.592 ALTERNATIVE:2 ENSMUSG00000000159 Igsf5 ENSMUST00000081093 ENSMUSP00000079874 TRANSLATION protein_coding - CCDS28357.1 1 270.0 0.0 1.33 1.5 25.4 1.0 1,-3 0.231 3 9.492 MINOR ENSMUSG00000000159 Igsf5 ENSMUST00000000163 ENSMUSP00000000163 TRANSLATION protein_coding - CCDS49924.1 1 370.0 0.0 2.33 5.4 26.1 1.0 1,-3 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000000159 Igsf5 ENSMUST00000113794 ENSMUSP00000109425 TRANSLATION protein_coding - CCDS49925.1 1 372.0 0.0 2.33 0.0 26.1 1.0 1,-3 0.4144 2 12.0 MINOR ENSMUSG00000000159 Igsf5 ENSMUST00000139595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000159 Igsf5 ENSMUST00000136292 ENSMUSP00000117904 TRANSLATION protein_coding start - 3 92.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000095706 Or5ac25 ENSMUST00000208875 ENSMUSP00000147068 TRANSLATION protein_coding - CCDS57032.1 2 305.0 0.0 2.33 9.8 167.5 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095706 Or5ac25 ENSMUST00000208246 ENSMUSP00000146910 TRANSLATION protein_coding - CCDS84247.1 1 103.0 0.0 1.198 0.0 45.5 3.0 -4,-7 0.015 - 3.084 MINOR ENSMUSG00000095706 Or5ac25 ENSMUST00000213779 ENSMUSP00000151413 TRANSLATION protein_coding - CCDS84247.1 5 103.0 0.0 1.198 0.0 45.5 3.0 -4,-7 0.015 - 3.084 MINOR ENSMUSG00000095706 Or5ac25 ENSMUST00000055868 ENSMUSP00000053192 TRANSLATION protein_coding - CCDS57032.1 - 305.0 0.0 2.33 9.8 167.5 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022935 Grik1 ENSMUST00000023652 ENSMUSP00000023652 TRANSLATION protein_coding - CCDS84254.1 1 905.0 10.0 13.05 7.4 594.3 5.0 -2,-6 1.0 1 16.0 PRINCIPAL:4 ENSMUSG00000022935 Grik1 ENSMUST00000210700 - NO_TRANSLATION retained_intron ENSMUSG00000022935 Grik1 ENSMUST00000226447 - NO_TRANSLATION retained_intron ENSMUSG00000022935 Grik1 ENSMUST00000211444 ENSMUSP00000147948 TRANSLATION protein_coding - CCDS84256.1 1 903.0 10.0 13.05 3.2 594.3 5.0 -2,-6 0.8244 1 14.688 MINOR ENSMUSG00000022935 Grik1 ENSMUST00000114137 ENSMUSP00000109773 TRANSLATION protein_coding - - 5 832.0 10.0 12.05 2.0 570.3 5.0 -4,-5 0.113 1 12.314 MINOR ENSMUSG00000022935 Grik1 ENSMUST00000211635 - NO_TRANSLATION retained_intron ENSMUSG00000022935 Grik1 ENSMUST00000072256 ENSMUSP00000072107 TRANSLATION protein_coding - CCDS84255.1 1 934.0 10.0 13.05 7.4 594.3 5.0 -2,-6 0.9014 1 16.0 ALTERNATIVE:1 ENSMUSG00000022935 Grik1 ENSMUST00000228188 ENSMUSP00000154130 TRANSLATION protein_coding - - - 920.0 10.0 13.05 7.4 594.3 5.0 -2,-6 0.7905 1 16.0 ALTERNATIVE:1 ENSMUSG00000022935 Grik1 ENSMUST00000228034 ENSMUSP00000154596 TRANSLATION protein_coding - - - 871.0 10.0 13.05 0.0 594.3 5.0 -2,-6 0.1406 1 14.0 MINOR ENSMUSG00000022935 Grik1 ENSMUST00000227986 ENSMUSP00000153786 TRANSLATION protein_coding - - - 949.0 10.0 13.05 0.0 594.3 5.0 -2,-6 0.1444 1 14.0 MINOR ENSMUSG00000022935 Grik1 ENSMUST00000210910 - NO_TRANSLATION retained_intron ENSMUSG00000076940 Iglv2 ENSMUST00000103752 ENSMUSP00000100466 TRANSLATION IG_V_gene stop - - 116.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.3469 1 -2.0 ALTERNATIVE:2 ENSMUSG00000076940 Iglv2 ENSMUST00000197518 ENSMUSP00000142646 TRANSLATION IG_V_gene stop - - 117.0 0.0 1.0 0.0 41.8 0.0 3,-2 0.8207 1 -2.0 PRINCIPAL:5 ENSMUSG00000038015 Prm2 ENSMUST00000189593 ENSMUSP00000139898 TRANSLATION protein_coding - CCDS27955.1 5 107.0 0.0 0.0 0.0 125.7 0.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000038015 Prm2 ENSMUST00000037996 ENSMUSP00000047925 TRANSLATION protein_coding - CCDS27955.1 1 107.0 0.0 0.0 0.0 125.7 0.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000000385 Tmprss2 ENSMUST00000232141 ENSMUSP00000156304 TRANSLATION protein_coding stop - - 103.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000385 Tmprss2 ENSMUST00000231544 ENSMUSP00000156007 TRANSLATION nonsense_mediated_decay start - - 96.0 5.0 0.95 0.0 87.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000385 Tmprss2 ENSMUST00000231715 - NO_TRANSLATION retained_intron ENSMUSG00000000385 Tmprss2 ENSMUST00000231908 - NO_TRANSLATION retained_intron ENSMUSG00000000385 Tmprss2 ENSMUST00000232599 - NO_TRANSLATION retained_intron ENSMUSG00000000385 Tmprss2 ENSMUST00000000395 ENSMUSP00000000395 TRANSLATION protein_coding - CCDS37417.1 1 490.0 10.0 6.65 8.6 363.7 1.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000035376 Hacd2 ENSMUST00000061156 ENSMUSP00000060462 TRANSLATION protein_coding - CCDS37321.1 1 254.0 0.0 5.18 0.0 200.9 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000035376 Hacd2 ENSMUST00000231516 - NO_TRANSLATION retained_intron ENSMUSG00000035376 Hacd2 ENSMUST00000231556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022496 Tnfrsf17 ENSMUST00000023140 ENSMUSP00000023140 TRANSLATION protein_coding - CCDS27962.1 1 185.0 0.0 1.6 3.7 69.7 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000053062 Jam2 ENSMUST00000098407 ENSMUSP00000096007 TRANSLATION protein_coding - - 1 181.0 0.0 1.855 0.0 35.8 0.0 2,-3 0.001 3 1.334 MINOR ENSMUSG00000053062 Jam2 ENSMUST00000114195 ENSMUSP00000109833 TRANSLATION protein_coding - CCDS37381.1 1 298.0 0.0 4.787 1.9 83.6 1.0 2,-3 1.0 7 8.67 PRINCIPAL:2 ENSMUSG00000053062 Jam2 ENSMUST00000138054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053062 Jam2 ENSMUST00000231910 ENSMUSP00000156235 TRANSLATION protein_coding - - - 322.0 0.0 4.952 0.0 83.6 1.0 -4,-6 0.0452 7 8.0 ALTERNATIVE:2 ENSMUSG00000022494 Shisa9 ENSMUST00000229804 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022494 Shisa9 ENSMUST00000182889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022494 Shisa9 ENSMUST00000232469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022494 Shisa9 ENSMUST00000023138 ENSMUSP00000023138 TRANSLATION protein_coding - CCDS49767.1 1 408.0 0.0 0.0 2.1 179.1 1.0 2,2 0.6176 6 6.666 MINOR ENSMUSG00000022494 Shisa9 ENSMUST00000170672 ENSMUSP00000132646 TRANSLATION protein_coding - CCDS49766.1 1 424.0 0.0 0.0 4.3 179.1 1.0 2,2 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000022494 Shisa9 ENSMUST00000182154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039209 Rpl39l ENSMUST00000121292 ENSMUSP00000112791 TRANSLATION protein_coding - CCDS37248.1 2 51.0 0.0 1.0 31.9 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000039209 Rpl39l ENSMUST00000044103 ENSMUSP00000041794 TRANSLATION protein_coding - CCDS37248.1 1 51.0 0.0 1.0 31.9 0.0 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000022758 P2rx6 ENSMUST00000171002 ENSMUSP00000132727 TRANSLATION protein_coding - CCDS49778.1 1 362.0 0.0 8.91 0.0 198.4 3.0 -4,-7 0.035 1 4.5 MINOR ENSMUSG00000022758 P2rx6 ENSMUST00000023441 ENSMUSP00000023441 TRANSLATION protein_coding - CCDS28007.2 1 389.0 0.0 9.66 0.1 454.0 3.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022758 P2rx6 ENSMUST00000231806 ENSMUSP00000156201 TRANSLATION nonsense_mediated_decay - - - 286.0 0.0 5.75 0.0 294.3 2.0 -4,-7 0.0038 - -2.0 MINOR ENSMUSG00000036304 Zdhhc23 ENSMUST00000165648 ENSMUSP00000128650 TRANSLATION protein_coding - CCDS28180.1 1 425.0 6.0 0.9 3.8 107.5 7.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000036304 Zdhhc23 ENSMUST00000232055 ENSMUSP00000156089 TRANSLATION protein_coding - - - 388.0 6.0 0.3 0.4 42.0 6.0 -4,-5 0.0157 2 10.068 MINOR ENSMUSG00000036304 Zdhhc23 ENSMUST00000231700 ENSMUSP00000156253 TRANSLATION protein_coding - CCDS28180.1 - 425.0 6.0 0.9 3.8 107.5 7.0 -4,-5 1.0 2 19.0 PRINCIPAL:1 ENSMUSG00000036304 Zdhhc23 ENSMUST00000036321 ENSMUSP00000044744 TRANSLATION protein_coding - - 1 422.0 6.0 0.9 3.8 87.1 7.0 -4,-5 0.6085 2 17.776 MINOR ENSMUSG00000039457 Ppl ENSMUST00000230554 - NO_TRANSLATION retained_intron ENSMUSG00000039457 Ppl ENSMUST00000035672 ENSMUSP00000039360 TRANSLATION protein_coding - CCDS27932.1 1 1754.0 0.0 5.133 16.6 0.0 0.0 -4,-2 1.0 82 10.0 PRINCIPAL:1 ENSMUSG00000033809 Alg3 ENSMUST00000231386 ENSMUSP00000156072 TRANSLATION nonsense_mediated_decay - - - 266.0 0.0 5.64 0.0 266.5 8.0 -4,-1 0.0021 1 -2.0 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000147867 ENSMUSP00000156272 TRANSLATION nonsense_mediated_decay - - 5 69.0 0.0 0.4 0.0 0.0 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000231749 ENSMUSP00000156234 TRANSLATION protein_coding stop - - 188.0 0.0 2.41 0.0 94.7 4.0 -4,-7 0.0037 - -2.0 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000231471 ENSMUSP00000156022 TRANSLATION nonsense_mediated_decay - - - 208.0 0.0 3.64 0.0 138.2 7.0 -4,-1 0.0021 1 -2.0 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000127454 ENSMUSP00000120559 TRANSLATION nonsense_mediated_decay start - 1 173.0 0.0 1.76 0.0 50.8 4.0 -4,-2 0.0037 - -2.0 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000232458 ENSMUSP00000156158 TRANSLATION protein_coding - - - 364.0 0.0 8.91 8.1 431.7 11.0 -4,-7 0.5055 2 9.09 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000231531 ENSMUSP00000156241 TRANSLATION protein_coding - - - 316.0 0.0 7.33 0.0 347.6 11.0 -1,-5 0.0053 2 0.378 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000231904 ENSMUSP00000156363 TRANSLATION nonsense_mediated_decay - - - 69.0 0.0 0.4 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000045918 ENSMUSP00000045272 TRANSLATION protein_coding - CCDS37289.1 1 438.0 0.0 10.14 14.0 475.6 14.0 -4,-1 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000033809 Alg3 ENSMUST00000232451 ENSMUSP00000156184 TRANSLATION nonsense_mediated_decay - - - 86.0 0.0 0.83 0.0 0.0 4.0 -1,-5 0.0023 - -2.0 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000232319 ENSMUSP00000156269 TRANSLATION protein_coding - - - 242.0 0.0 5.58 0.0 245.2 11.0 -1,-5 0.0029 - 0.0 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000231387 ENSMUSP00000155988 TRANSLATION nonsense_mediated_decay - - - 134.0 0.0 2.41 0.0 94.7 4.0 -4,-7 0.0037 - -2.0 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000123774 ENSMUSP00000123378 TRANSLATION nonsense_mediated_decay - - 1 107.0 0.0 0.8525 0.0 0.0 3.0 -4,0 0.0002 1 -2.0 MINOR ENSMUSG00000033809 Alg3 ENSMUST00000231362 ENSMUSP00000155979 TRANSLATION nonsense_mediated_decay - - - 128.0 0.0 0.6 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000002489 Tiam1 ENSMUST00000151655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002489 Tiam1 ENSMUST00000136760 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002489 Tiam1 ENSMUST00000155915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002489 Tiam1 ENSMUST00000002588 ENSMUSP00000002588 TRANSLATION protein_coding - CCDS28314.1 1 1591.0 0.0 15.78 11.2 324.7 0.0 -4,-5 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000002489 Tiam1 ENSMUST00000164263 ENSMUSP00000126020 TRANSLATION protein_coding - CCDS49904.1 1 622.0 0.0 9.48 6.6 178.9 0.0 -4,-7 0.331 8 1.647 MINOR ENSMUSG00000002489 Tiam1 ENSMUST00000089084 - NO_TRANSLATION retained_intron ENSMUSG00000002489 Tiam1 ENSMUST00000144691 ENSMUSP00000136283 TRANSLATION protein_coding start - 5 92.0 0.0 1.35 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002489 Tiam1 ENSMUST00000134021 ENSMUSP00000137637 TRANSLATION protein_coding start - 1 168.0 0.0 3.18 0.0 37.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000002489 Tiam1 ENSMUST00000163370 ENSMUSP00000132137 TRANSLATION protein_coding - CCDS28314.1 1 1591.0 0.0 15.78 11.2 324.7 0.0 -4,-5 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000002489 Tiam1 ENSMUST00000114124 ENSMUSP00000109759 TRANSLATION protein_coding - - 5 900.0 0.0 4.4 0.0 56.7 0.0 -4,-5 0.0032 12 0.0 MINOR ENSMUSG00000002489 Tiam1 ENSMUST00000139544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002489 Tiam1 ENSMUST00000114122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002489 Tiam1 ENSMUST00000130951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002489 Tiam1 ENSMUST00000124433 - NO_TRANSLATION retained_intron ENSMUSG00000002489 Tiam1 ENSMUST00000178095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068067 1110057P08Rik ENSMUST00000089097 ENSMUSP00000086498 TRANSLATION protein_coding - - - 48.0 0.0 0.0 0.0 24.4 0.0 -4,-5 0.6987 - 6.0 PRINCIPAL:1 ENSMUSG00000022657 Cd96 ENSMUST00000023336 ENSMUSP00000023336 TRANSLATION protein_coding - CCDS37348.1 1 602.0 0.0 2.56 0.1 23.3 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022759 Lrrc74b ENSMUST00000023442 ENSMUSP00000023442 TRANSLATION protein_coding - CCDS49777.1 1 359.0 0.0 6.75 0.0 105.5 0.0 -4,-5 0.0791 1 9.306 MINOR ENSMUSG00000022759 Lrrc74b ENSMUST00000232230 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022759 Lrrc74b ENSMUST00000232637 ENSMUSP00000155867 TRANSLATION protein_coding - - - 310.0 0.0 5.75 0.0 105.5 0.0 -4,-5 0.0357 1 7.302 MINOR ENSMUSG00000022759 Lrrc74b ENSMUST00000100123 ENSMUSP00000097699 TRANSLATION protein_coding - CCDS28006.2 1 391.0 0.0 7.75 0.0 117.1 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022848 Slc49a4 ENSMUST00000023554 ENSMUSP00000023554 TRANSLATION protein_coding - CCDS28141.1 1 478.0 0.0 0.0 9.8 0.0 11.0 -4,-6 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000022848 Slc49a4 ENSMUST00000149892 ENSMUSP00000120775 TRANSLATION nonsense_mediated_decay - - 5 115.0 0.0 0.0 0.0 0.0 2.0 -4,-6 0.0164 2 -2.0 MINOR ENSMUSG00000074991 Gabrr3 ENSMUST00000114341 ENSMUSP00000109980 TRANSLATION protein_coding - CCDS37371.1 1 464.0 0.0 4.8 6.8 276.5 0.0 0,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058172 Krtap6-1 ENSMUST00000076906 ENSMUSP00000076172 TRANSLATION protein_coding - CCDS37389.1 - 78.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000053414 Hunk ENSMUST00000065856 ENSMUSP00000068007 TRANSLATION protein_coding - CCDS28315.1 1 714.0 17.0 4.1375 5.3 238.0 0.0 -4,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000053414 Hunk ENSMUST00000231719 ENSMUSP00000156104 TRANSLATION protein_coding - - - 638.0 10.0 4.1355 0.0 212.3 0.0 -4,-5 0.0205 1 11.784 MINOR ENSMUSG00000053414 Hunk ENSMUST00000231603 - NO_TRANSLATION retained_intron ENSMUSG00000022512 Cldn1 ENSMUST00000023154 ENSMUSP00000023154 TRANSLATION protein_coding - CCDS28087.1 1 211.0 0.0 3.15 31.9 183.7 0.0 0,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022512 Cldn1 ENSMUST00000232215 - NO_TRANSLATION retained_intron ENSMUSG00000022721 Trmt2a ENSMUST00000059696 - NO_TRANSLATION retained_intron ENSMUSG00000022721 Trmt2a ENSMUST00000140206 ENSMUSP00000121216 TRANSLATION protein_coding - CCDS57020.1 1 574.0 11.0 4.056 0.0 29.8 0.0 -4,-5 0.0082 15 6.33 MINOR ENSMUSG00000022721 Trmt2a ENSMUST00000131211 - NO_TRANSLATION retained_intron ENSMUSG00000022721 Trmt2a ENSMUST00000147273 - NO_TRANSLATION retained_intron ENSMUSG00000022721 Trmt2a ENSMUST00000153292 - NO_TRANSLATION retained_intron ENSMUSG00000022721 Trmt2a ENSMUST00000127239 - NO_TRANSLATION retained_intron ENSMUSG00000022721 Trmt2a ENSMUST00000231509 ENSMUSP00000156227 TRANSLATION protein_coding start - - 74.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000022721 Trmt2a ENSMUST00000232293 ENSMUSP00000155985 TRANSLATION protein_coding start - - 76.0 10.0 2.08 0.0 32.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022721 Trmt2a ENSMUST00000115640 ENSMUSP00000111304 TRANSLATION protein_coding - CCDS37281.1 1 613.0 18.0 4.556 0.0 62.2 0.0 -4,-5 1.0 17 12.0 ALTERNATIVE:2 ENSMUSG00000022721 Trmt2a ENSMUST00000232342 - NO_TRANSLATION retained_intron ENSMUSG00000022721 Trmt2a ENSMUST00000100099 ENSMUSP00000111303 TRANSLATION protein_coding - CCDS37282.1 1 613.0 18.0 4.556 0.0 62.2 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:5 ENSMUSG00000022721 Trmt2a ENSMUST00000128045 ENSMUSP00000133226 TRANSLATION protein_coding start - 5 70.0 0.0 1.01 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022721 Trmt2a ENSMUST00000232015 - NO_TRANSLATION retained_intron ENSMUSG00000022721 Trmt2a ENSMUST00000145112 ENSMUSP00000117026 TRANSLATION protein_coding start/stop - 5 281.0 18.0 3.726 0.0 58.9 0.0 -4,-7 0.0078 9 -2.0 MINOR ENSMUSG00000022515 Anks3 ENSMUST00000229898 - NO_TRANSLATION retained_intron ENSMUSG00000022515 Anks3 ENSMUST00000229765 ENSMUSP00000155302 TRANSLATION protein_coding - - - 469.0 0.0 4.68 0.0 119.8 0.0 -4,-5 0.0013 3 8.856 MINOR ENSMUSG00000022515 Anks3 ENSMUST00000229477 - NO_TRANSLATION retained_intron ENSMUSG00000022515 Anks3 ENSMUST00000230083 - NO_TRANSLATION retained_intron ENSMUSG00000022515 Anks3 ENSMUST00000230466 - NO_TRANSLATION retained_intron ENSMUSG00000022515 Anks3 ENSMUST00000229272 ENSMUSP00000155421 TRANSLATION protein_coding start - - 140.0 0.0 0.365 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022515 Anks3 ENSMUST00000229077 - NO_TRANSLATION retained_intron ENSMUSG00000022515 Anks3 ENSMUST00000023157 ENSMUSP00000023157 TRANSLATION protein_coding - CCDS27928.1 1 655.0 0.0 5.28 8.9 152.2 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000022515 Anks3 ENSMUST00000230493 - NO_TRANSLATION retained_intron ENSMUSG00000022515 Anks3 ENSMUST00000230771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022515 Anks3 ENSMUST00000230721 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022515 Anks3 ENSMUST00000231036 ENSMUSP00000155247 TRANSLATION nonsense_mediated_decay start - - 266.0 0.0 1.6 0.0 47.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000022515 Anks3 ENSMUST00000229017 ENSMUSP00000155720 TRANSLATION protein_coding start/stop - - 246.0 0.0 2.68 0.0 53.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000090236 Car15 ENSMUST00000231865 - NO_TRANSLATION retained_intron ENSMUSG00000090236 Car15 ENSMUST00000232516 - NO_TRANSLATION retained_intron ENSMUSG00000090236 Car15 ENSMUST00000118960 ENSMUSP00000113400 TRANSLATION protein_coding - CCDS49784.1 1 324.0 3.0 6.25 0.1 285.7 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000090236 Car15 ENSMUST00000232529 - NO_TRANSLATION retained_intron ENSMUSG00000049076 Acap2 ENSMUST00000230614 ENSMUSP00000154983 TRANSLATION protein_coding - CCDS49823.1 - 770.0 6.0 17.075 0.4 538.1 0.0 -4,-5 1.0 16 14.0 PRINCIPAL:2 ENSMUSG00000049076 Acap2 ENSMUST00000230839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049076 Acap2 ENSMUST00000239132 ENSMUSP00000159102 TRANSLATION protein_coding start - - 99.0 0.0 1.875 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000049076 Acap2 ENSMUST00000231125 ENSMUSP00000154852 TRANSLATION protein_coding - - - 777.0 6.0 16.745 0.4 528.9 0.0 -4,-5 0.1248 16 13.14 MINOR ENSMUSG00000049076 Acap2 ENSMUST00000058033 ENSMUSP00000061501 TRANSLATION protein_coding - - 1 752.0 6.0 16.775 0.0 492.6 0.0 -4,-5 0.0988 15 12.8 MINOR ENSMUSG00000049076 Acap2 ENSMUST00000230698 ENSMUSP00000154938 TRANSLATION nonsense_mediated_decay - - - 142.0 0.0 2.1 0.0 116.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000049076 Acap2 ENSMUST00000229010 ENSMUSP00000156077 TRANSLATION protein_coding - - - 805.0 6.0 16.825 0.4 538.1 0.0 -4,-5 0.0841 17 13.502 ALTERNATIVE:2 ENSMUSG00000095928 Or5ac22 ENSMUST00000072517 ENSMUSP00000072332 TRANSLATION protein_coding - CCDS28253.1 - 305.0 0.0 1.0 11.5 165.4 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095928 Or5ac22 ENSMUST00000216261 ENSMUSP00000151176 TRANSLATION protein_coding - CCDS28253.1 3 305.0 0.0 1.0 11.5 165.4 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000064115 Cadm2 ENSMUST00000114292 ENSMUSP00000109931 TRANSLATION protein_coding - CCDS28270.1 1 404.0 0.0 5.729 25.9 140.6 2.0 1,0 0.9371 15 11.568 ALTERNATIVE:1 ENSMUSG00000064115 Cadm2 ENSMUST00000128168 ENSMUSP00000134554 TRANSLATION protein_coding start - 5 435.0 0.0 5.934 2.1 140.6 2.0 -2,0 0.5045 15 -2.0 MINOR ENSMUSG00000064115 Cadm2 ENSMUST00000120594 ENSMUSP00000113500 TRANSLATION protein_coding - CCDS84251.1 5 435.0 0.0 5.945 23.9 140.6 2.0 2,-3 1.0 15 11.68 PRINCIPAL:4 ENSMUSG00000064115 Cadm2 ENSMUST00000141282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064115 Cadm2 ENSMUST00000120898 ENSMUSP00000113178 TRANSLATION protein_coding - CCDS49885.1 1 395.0 0.0 5.465 15.5 140.6 2.0 2,-3 0.8173 15 9.368 MINOR ENSMUSG00000064115 Cadm2 ENSMUST00000123266 ENSMUSP00000123192 TRANSLATION protein_coding stop - 5 53.0 0.0 0.15 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000071632 2510002D24Rik ENSMUST00000055413 ENSMUSP00000060363 TRANSLATION protein_coding - CCDS28029.1 1 105.0 0.0 2.0 7.5 49.5 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000071632 2510002D24Rik ENSMUST00000191388 ENSMUSP00000141071 TRANSLATION protein_coding - - 5 49.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 2 3.0 MINOR ENSMUSG00000071632 2510002D24Rik ENSMUST00000190776 - NO_TRANSLATION retained_intron ENSMUSG00000071632 2510002D24Rik ENSMUST00000123146 ENSMUSP00000140943 TRANSLATION protein_coding - - 1 71.0 0.0 1.165 0.0 43.7 0.0 -4,-7 0.0014 1 8.796 MINOR ENSMUSG00000022897 Dyrk1a ENSMUST00000023614 ENSMUSP00000023614 TRANSLATION protein_coding - CCDS28350.1 5 763.0 19.0 6.3696 15.5 169.7 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000022897 Dyrk1a ENSMUST00000155791 ENSMUSP00000119669 TRANSLATION protein_coding stop - 5 181.0 6.0 1.3696 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000022897 Dyrk1a ENSMUST00000122284 ENSMUSP00000112853 TRANSLATION protein_coding - - 5 725.0 19.0 6.3696 8.6 169.7 0.0 -4,-2 0.6891 6 20.096 MINOR ENSMUSG00000022897 Dyrk1a ENSMUST00000119878 ENSMUSP00000113660 TRANSLATION protein_coding - CCDS28350.1 5 763.0 19.0 6.3696 15.5 169.7 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000022897 Dyrk1a ENSMUST00000134383 - NO_TRANSLATION retained_intron ENSMUSG00000022897 Dyrk1a ENSMUST00000139250 ENSMUSP00000120344 TRANSLATION protein_coding stop - 3 110.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000050312 Nsun3 ENSMUST00000152842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050312 Nsun3 ENSMUST00000063089 ENSMUSP00000059720 TRANSLATION protein_coding - CCDS37373.1 1 348.0 17.0 6.33 0.1 101.1 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000050312 Nsun3 ENSMUST00000156676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050312 Nsun3 ENSMUST00000231289 - NO_TRANSLATION retained_intron ENSMUSG00000050312 Nsun3 ENSMUST00000152553 ENSMUSP00000123643 TRANSLATION protein_coding stop - 3 125.0 5.0 2.1 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000050312 Nsun3 ENSMUST00000151583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050312 Nsun3 ENSMUST00000143314 ENSMUSP00000114448 TRANSLATION nonsense_mediated_decay - - 1 77.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022841 Ap2m1 ENSMUST00000150537 - NO_TRANSLATION retained_intron ENSMUSG00000022841 Ap2m1 ENSMUST00000131203 - NO_TRANSLATION retained_intron ENSMUSG00000022841 Ap2m1 ENSMUST00000135420 - NO_TRANSLATION retained_intron ENSMUSG00000022841 Ap2m1 ENSMUST00000126788 ENSMUSP00000156295 TRANSLATION nonsense_mediated_decay - - 5 82.0 0.0 1.05 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022841 Ap2m1 ENSMUST00000133443 - NO_TRANSLATION retained_intron ENSMUSG00000022841 Ap2m1 ENSMUST00000148507 - NO_TRANSLATION retained_intron ENSMUSG00000022841 Ap2m1 ENSMUST00000150986 - NO_TRANSLATION retained_intron ENSMUSG00000022841 Ap2m1 ENSMUST00000134981 - NO_TRANSLATION retained_intron ENSMUSG00000022841 Ap2m1 ENSMUST00000007216 ENSMUSP00000007216 TRANSLATION protein_coding - CCDS28048.1 5 435.0 0.0 11.08 36.9 299.5 0.0 -4,-6 0.9868 18 10.0 ALTERNATIVE:1 ENSMUSG00000022841 Ap2m1 ENSMUST00000232001 ENSMUSP00000156123 TRANSLATION protein_coding stop - - 119.0 0.0 3.33 0.0 34.4 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000022841 Ap2m1 ENSMUST00000090023 ENSMUSP00000087477 TRANSLATION protein_coding - CCDS79436.1 1 433.0 0.0 11.08 36.9 299.5 0.0 -4,-6 1.0 19 10.0 PRINCIPAL:3 ENSMUSG00000005958 Ephb3 ENSMUST00000160053 - NO_TRANSLATION retained_intron ENSMUSG00000005958 Ephb3 ENSMUST00000232407 ENSMUSP00000155937 TRANSLATION protein_coding stop - - 191.0 0.0 2.5 0.0 241.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005958 Ephb3 ENSMUST00000231316 ENSMUSP00000155955 TRANSLATION protein_coding stop - - 79.0 0.0 1.5 0.0 100.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005958 Ephb3 ENSMUST00000161063 ENSMUSP00000124375 TRANSLATION protein_coding - - 1 739.0 18.0 10.28 0.0 604.7 2.0 -4,-5 0.061 11 6.0 MINOR ENSMUSG00000005958 Ephb3 ENSMUST00000159575 - NO_TRANSLATION retained_intron ENSMUSG00000005958 Ephb3 ENSMUST00000006112 ENSMUSP00000006112 TRANSLATION protein_coding - CCDS28060.1 1 993.0 18.0 13.53 0.1 845.6 2.0 4,-1 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000041215 Yeats2 ENSMUST00000231795 - NO_TRANSLATION retained_intron ENSMUSG00000041215 Yeats2 ENSMUST00000232054 - NO_TRANSLATION retained_intron ENSMUSG00000041215 Yeats2 ENSMUST00000231705 ENSMUSP00000156060 TRANSLATION protein_coding stop - - 218.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000041215 Yeats2 ENSMUST00000231671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041215 Yeats2 ENSMUST00000231997 - NO_TRANSLATION retained_intron ENSMUSG00000041215 Yeats2 ENSMUST00000115560 ENSMUSP00000111222 TRANSLATION protein_coding - CCDS49790.1 5 1407.0 0.0 3.5 4.4 87.6 0.0 -4,-5 1.0 23 14.0 PRINCIPAL:1 ENSMUSG00000041215 Yeats2 ENSMUST00000232671 - NO_TRANSLATION retained_intron ENSMUSG00000041215 Yeats2 ENSMUST00000232094 - NO_TRANSLATION retained_intron ENSMUSG00000041215 Yeats2 ENSMUST00000232338 ENSMUSP00000155891 TRANSLATION nonsense_mediated_decay - - - 844.0 0.0 3.5 0.0 87.6 0.0 -4,-5 0.068 12 -2.0 MINOR ENSMUSG00000041215 Yeats2 ENSMUST00000232019 ENSMUSP00000155892 TRANSLATION protein_coding start - - 1369.0 0.0 3.5 0.0 87.6 0.0 -4,-5 0.2426 22 -2.0 MINOR ENSMUSG00000041215 Yeats2 ENSMUST00000232172 - NO_TRANSLATION retained_intron ENSMUSG00000041215 Yeats2 ENSMUST00000090052 ENSMUSP00000087506 TRANSLATION protein_coding - CCDS28043.1 1 1354.0 0.0 3.5 0.4 87.6 0.0 -4,-5 0.5002 23 12.0 MINOR ENSMUSG00000041215 Yeats2 ENSMUST00000232613 ENSMUSP00000156314 TRANSLATION nonsense_mediated_decay start - - 142.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000041215 Yeats2 ENSMUST00000231861 - NO_TRANSLATION retained_intron ENSMUSG00000045275 Lca5l ENSMUST00000233151 ENSMUSP00000156726 TRANSLATION protein_coding - - - 729.0 0.0 2.75 0.0 216.7 0.0 -4,-5 0.7149 3 8.0 ALTERNATIVE:2 ENSMUSG00000045275 Lca5l ENSMUST00000054855 ENSMUSP00000061337 TRANSLATION protein_coding - CCDS37413.1 1 735.0 0.0 2.75 0.0 216.7 0.0 -4,-5 0.7181 3 8.0 ALTERNATIVE:2 ENSMUSG00000045275 Lca5l ENSMUST00000142620 - NO_TRANSLATION retained_intron ENSMUSG00000045275 Lca5l ENSMUST00000113804 ENSMUSP00000109435 TRANSLATION protein_coding - - 1 730.0 0.0 2.75 0.0 216.7 0.0 -4,-5 0.801 3 8.0 PRINCIPAL:4 ENSMUSG00000045275 Lca5l ENSMUST00000154445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045275 Lca5l ENSMUST00000233889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000115219 Eef1akmt4 ENSMUST00000115522 ENSMUSP00000111184 TRANSLATION protein_coding - CCDS37290.1 1 255.0 14.0 3.0 9.9 47.9 0.0 -4,-6 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000115219 Eef1akmt4 ENSMUST00000119224 ENSMUSP00000113772 TRANSLATION protein_coding - - 2 197.0 14.0 2.0 0.0 38.6 0.0 -4,-6 0.0003 1 14.838 MINOR ENSMUSG00000043357 Or5h19 ENSMUST00000206428 ENSMUSP00000145932 TRANSLATION protein_coding - CCDS28243.1 - 308.0 0.0 1.0 11.5 168.3 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043357 Or5h19 ENSMUST00000207673 ENSMUSP00000147035 TRANSLATION protein_coding - CCDS28243.1 2 308.0 0.0 1.0 11.5 168.3 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051802 Krtap19-5 ENSMUST00000053460 ENSMUSP00000055511 TRANSLATION protein_coding - CCDS37388.1 - 62.0 0.0 0.0 0.0 40.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000003166 Dgcr2 ENSMUST00000231306 - NO_TRANSLATION retained_intron ENSMUSG00000003166 Dgcr2 ENSMUST00000117945 ENSMUSP00000112783 TRANSLATION protein_coding - CCDS49785.1 1 546.0 4.0 1.43 12.3 118.2 2.0 2,-3 0.9787 5 15.0 ALTERNATIVE:1 ENSMUSG00000003166 Dgcr2 ENSMUST00000126919 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003166 Dgcr2 ENSMUST00000066127 ENSMUSP00000064603 TRANSLATION protein_coding - - 1 478.0 4.0 1.43 1.7 118.2 2.0 2,-3 0.2938 3 12.186 MINOR ENSMUSG00000003166 Dgcr2 ENSMUST00000012152 ENSMUSP00000012152 TRANSLATION protein_coding - CCDS37276.1 1 549.0 4.0 1.43 12.3 118.2 2.0 2,-3 1.0 5 15.0 PRINCIPAL:4 ENSMUSG00000003166 Dgcr2 ENSMUST00000155611 - NO_TRANSLATION retained_intron ENSMUSG00000003166 Dgcr2 ENSMUST00000155943 ENSMUSP00000156306 TRANSLATION protein_coding - - 5 326.0 0.0 0.2 0.0 0.0 2.0 -4,-5 0.0017 4 0.84 MINOR ENSMUSG00000003166 Dgcr2 ENSMUST00000135229 - NO_TRANSLATION retained_intron ENSMUSG00000003166 Dgcr2 ENSMUST00000231750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003166 Dgcr2 ENSMUST00000117082 ENSMUSP00000113506 TRANSLATION protein_coding - - 1 548.0 4.0 1.43 10.3 118.2 2.0 2,-3 0.8467 5 14.469 ALTERNATIVE:1 ENSMUSG00000022780 Meltf ENSMUST00000023464 ENSMUSP00000023464 TRANSLATION protein_coding - CCDS28108.1 1 738.0 18.0 13.5 0.3 785.1 0.0 4,-1 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000074995 Or5ac19 ENSMUST00000216834 ENSMUSP00000150660 TRANSLATION protein_coding - CCDS37369.1 5 308.0 0.0 1.0 11.5 157.9 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074995 Or5ac19 ENSMUST00000099656 ENSMUSP00000097248 TRANSLATION protein_coding - CCDS37369.1 - 308.0 0.0 1.0 11.5 157.9 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022790 Igsf11 ENSMUST00000210186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022790 Igsf11 ENSMUST00000210471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022790 Igsf11 ENSMUST00000023478 ENSMUSP00000023478 TRANSLATION protein_coding - CCDS28175.1 1 428.0 0.0 5.6 4.6 100.9 1.0 3,-2 1.0 5 13.521 PRINCIPAL:1 ENSMUSG00000022790 Igsf11 ENSMUST00000209958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022790 Igsf11 ENSMUST00000114706 ENSMUSP00000110354 TRANSLATION protein_coding - - 1 369.0 0.0 4.5 8.1 74.6 1.0 -4,-5 0.5245 5 11.22 MINOR ENSMUSG00000012017 Scarf2 ENSMUST00000231329 - NO_TRANSLATION retained_intron ENSMUSG00000012017 Scarf2 ENSMUST00000232577 ENSMUSP00000156358 TRANSLATION protein_coding - - - 566.0 0.0 5.75 0.0 13.4 0.0 0,-3 0.1265 8 6.0 ALTERNATIVE:2 ENSMUSG00000012017 Scarf2 ENSMUST00000012161 ENSMUSP00000012161 TRANSLATION protein_coding - CCDS28010.1 1 833.0 0.0 5.75 0.1 13.4 0.0 0,-3 1.0 15 6.0 PRINCIPAL:2 ENSMUSG00000012017 Scarf2 ENSMUST00000231383 - NO_TRANSLATION retained_intron ENSMUSG00000012017 Scarf2 ENSMUST00000231301 ENSMUSP00000156349 TRANSLATION protein_coding start/stop - - 141.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0004 1 -2.0 MINOR ENSMUSG00000064006 Or5h22 ENSMUST00000216495 ENSMUSP00000148991 TRANSLATION protein_coding - CCDS49881.1 3 307.0 0.0 1.0 11.5 157.9 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000064006 Or5h22 ENSMUST00000071243 ENSMUSP00000071224 TRANSLATION protein_coding - CCDS49881.1 - 307.0 0.0 1.0 11.5 157.9 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000064006 Or5h22 ENSMUST00000215687 ENSMUSP00000150190 TRANSLATION nonsense_mediated_decay - CCDS49881.1 5 307.0 0.0 1.0 11.5 157.9 7.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000054905 Stfa3 ENSMUST00000068182 ENSMUSP00000067445 TRANSLATION protein_coding - CCDS28153.1 1 103.0 0.0 2.75 0.8 83.2 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000014232 Cluap1 ENSMUST00000040881 ENSMUSP00000043397 TRANSLATION protein_coding - CCDS27912.1 1 413.0 0.0 0.0 17.8 392.8 0.0 -4,-2 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000014232 Cluap1 ENSMUST00000137745 - NO_TRANSLATION retained_intron ENSMUSG00000014232 Cluap1 ENSMUST00000145150 ENSMUSP00000116855 TRANSLATION protein_coding stop - 5 187.0 0.0 0.0 0.0 262.7 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000014232 Cluap1 ENSMUST00000139294 ENSMUSP00000121029 TRANSLATION nonsense_mediated_decay - - 1 85.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000014232 Cluap1 ENSMUST00000124849 ENSMUSP00000119490 TRANSLATION protein_coding stop - 1 206.0 0.0 0.0 0.0 285.4 0.0 -4,-7 0.0008 3 -2.0 MINOR ENSMUSG00000022508 Bcl6 ENSMUST00000135352 - NO_TRANSLATION retained_intron ENSMUSG00000022508 Bcl6 ENSMUST00000023151 ENSMUSP00000023151 TRANSLATION protein_coding - CCDS28082.1 1 707.0 22.0 6.12 19.2 171.3 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000022683 Pla2g10 ENSMUST00000023364 ENSMUSP00000023364 TRANSLATION protein_coding - CCDS27967.1 1 151.0 5.0 3.5 0.0 109.1 0.0 3,-2 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000022683 Pla2g10 ENSMUST00000156504 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022683 Pla2g10 ENSMUST00000115807 ENSMUSP00000111474 TRANSLATION protein_coding - CCDS70684.1 1 144.0 3.0 2.5 0.0 82.8 0.0 3,-2 0.0583 2 11.424 MINOR ENSMUSG00000022683 Pla2g10 ENSMUST00000127780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022940 Pigp ENSMUST00000113906 ENSMUSP00000109539 TRANSLATION protein_coding - CCDS28348.1 1 132.0 0.0 3.75 26.6 139.0 6.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022940 Pigp ENSMUST00000113917 ENSMUSP00000109550 TRANSLATION protein_coding - CCDS49918.1 1 139.0 0.0 2.5825 0.0 100.7 6.0 -3,-1 0.0257 - 7.368 MINOR ENSMUSG00000022940 Pigp ENSMUST00000113914 ENSMUSP00000109547 TRANSLATION protein_coding - CCDS49920.1 1 205.0 0.0 3.75 0.0 139.0 6.0 -4,-1 0.2241 2 12.0 MINOR ENSMUSG00000022940 Pigp ENSMUST00000113910 ENSMUSP00000109543 TRANSLATION protein_coding - CCDS49919.1 1 161.0 0.0 3.75 0.0 139.0 6.0 -4,-7 0.1933 3 12.0 MINOR ENSMUSG00000022940 Pigp ENSMUST00000138514 ENSMUSP00000114477 TRANSLATION protein_coding stop - 1 151.0 0.0 3.25 0.0 129.5 6.0 -3,-1 0.0114 2 -2.0 MINOR ENSMUSG00000022940 Pigp ENSMUST00000146924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022940 Pigp ENSMUST00000232294 ENSMUSP00000155972 TRANSLATION protein_coding - CCDS28348.1 - 132.0 0.0 3.75 26.6 139.0 6.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022940 Pigp ENSMUST00000113905 ENSMUSP00000109538 TRANSLATION protein_coding - CCDS28348.1 1 132.0 0.0 3.75 26.6 139.0 6.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000043140 Tmem186 ENSMUST00000052505 ENSMUSP00000053862 TRANSLATION protein_coding - CCDS27940.1 1 216.0 0.0 0.5 6.3 0.0 0.0 -4,0 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000022956 Atp5po ENSMUST00000139277 ENSMUSP00000156380 TRANSLATION protein_coding stop - 3 94.0 0.0 2.58 0.0 83.6 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000022956 Atp5po ENSMUST00000132049 - NO_TRANSLATION retained_intron ENSMUSG00000022956 Atp5po ENSMUST00000154661 ENSMUSP00000156308 TRANSLATION protein_coding stop - 5 109.0 0.0 2.3 0.0 42.8 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000022956 Atp5po ENSMUST00000023677 ENSMUSP00000023677 TRANSLATION protein_coding - CCDS28331.1 1 213.0 0.0 5.21 14.7 150.9 0.0 -4,0 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000022956 Atp5po ENSMUST00000155452 ENSMUSP00000118216 TRANSLATION nonsense_mediated_decay start - 5 71.0 0.0 1.3 0.0 23.6 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000022956 Atp5po ENSMUST00000150642 - NO_TRANSLATION retained_intron ENSMUSG00000022893 Adamts1 ENSMUST00000023610 ENSMUSP00000023610 TRANSLATION protein_coding - CCDS28287.1 1 968.0 18.0 7.5 2.0 361.9 0.0 -1,-4 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000022893 Adamts1 ENSMUST00000138474 - NO_TRANSLATION retained_intron ENSMUSG00000022893 Adamts1 ENSMUST00000125897 ENSMUSP00000118471 TRANSLATION protein_coding stop - 1 681.0 17.0 7.2 0.0 269.6 0.0 -4,-6 0.049 5 -2.0 MINOR ENSMUSG00000052316 Lrrc15 ENSMUST00000064606 ENSMUSP00000066777 TRANSLATION protein_coding - CCDS28099.1 1 579.0 0.0 1.0 6.7 237.6 0.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000022842 Ece2 ENSMUST00000122306 ENSMUSP00000114039 TRANSLATION protein_coding - - 1 709.0 3.0 14.98 0.1 587.4 1.0 -4,-5 0.0186 5 9.396 MINOR ENSMUSG00000022842 Ece2 ENSMUST00000152246 - NO_TRANSLATION retained_intron ENSMUSG00000022842 Ece2 ENSMUST00000145511 - NO_TRANSLATION retained_intron ENSMUSG00000022842 Ece2 ENSMUST00000003898 ENSMUSP00000003898 TRANSLATION protein_coding - CCDS28052.1 1 763.0 3.0 15.98 25.9 647.5 1.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000022842 Ece2 ENSMUST00000133344 ENSMUSP00000119693 TRANSLATION protein_coding - CCDS49796.1 1 734.0 3.0 15.98 6.9 647.5 1.0 -4,-7 0.5169 5 15.948 MINOR ENSMUSG00000022842 Ece2 ENSMUST00000125971 ENSMUSP00000120239 TRANSLATION protein_coding start - 1 527.0 3.0 11.58 0.0 454.5 0.0 -4,-6 0.0008 2 -2.0 MINOR ENSMUSG00000022842 Ece2 ENSMUST00000231739 - NO_TRANSLATION retained_intron ENSMUSG00000022969 Il10rb ENSMUST00000144215 ENSMUSP00000120485 TRANSLATION nonsense_mediated_decay start - 5 65.0 0.0 1.0 0.0 34.8 0.0 3,-1 0.0 1 -2.0 MINOR ENSMUSG00000022969 Il10rb ENSMUST00000137612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022969 Il10rb ENSMUST00000152729 - NO_TRANSLATION retained_intron ENSMUSG00000022969 Il10rb ENSMUST00000023691 ENSMUSP00000023691 TRANSLATION protein_coding - CCDS37398.1 1 351.0 0.0 5.0 0.4 158.1 0.0 3,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000022969 Il10rb ENSMUST00000156133 ENSMUSP00000120227 TRANSLATION nonsense_mediated_decay - - 1 52.0 0.0 0.0 0.0 0.0 0.0 -2,-4 0.0 - -2.0 MINOR ENSMUSG00000022788 Fgd4 ENSMUST00000159542 ENSMUSP00000125649 TRANSLATION protein_coding stop - 1 392.0 0.0 2.62 0.0 154.9 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000022788 Fgd4 ENSMUST00000162414 - NO_TRANSLATION retained_intron ENSMUSG00000022788 Fgd4 ENSMUST00000172181 - NO_TRANSLATION retained_intron ENSMUSG00000022788 Fgd4 ENSMUST00000162542 - NO_TRANSLATION retained_intron ENSMUSG00000022788 Fgd4 ENSMUST00000162671 ENSMUSP00000125736 TRANSLATION protein_coding - CCDS27986.1 1 766.0 5.0 6.72 5.2 301.2 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000022788 Fgd4 ENSMUST00000162124 - NO_TRANSLATION retained_intron ENSMUSG00000022788 Fgd4 ENSMUST00000161861 ENSMUSP00000125174 TRANSLATION protein_coding - CCDS27986.1 1 766.0 5.0 6.72 5.2 301.2 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000022788 Fgd4 ENSMUST00000161188 ENSMUSP00000123763 TRANSLATION protein_coding - - 2 603.0 4.0 5.22 0.0 250.1 0.0 -4,-5 0.0 10 9.934 MINOR ENSMUSG00000022788 Fgd4 ENSMUST00000069284 ENSMUSP00000069573 TRANSLATION protein_coding stop - 1 754.0 5.0 6.72 0.0 301.2 0.0 -4,-5 0.1308 13 -2.0 MINOR ENSMUSG00000022788 Fgd4 ENSMUST00000162045 - NO_TRANSLATION retained_intron ENSMUSG00000022788 Fgd4 ENSMUST00000159058 - NO_TRANSLATION retained_intron ENSMUSG00000022788 Fgd4 ENSMUST00000161624 - NO_TRANSLATION retained_intron ENSMUSG00000022769 Sdf2l1 ENSMUST00000023453 ENSMUSP00000023453 TRANSLATION protein_coding - CCDS37270.1 1 221.0 0.0 2.8 5.0 38.2 0.0 2,1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000022961 Son ENSMUST00000146079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022961 Son ENSMUST00000114036 ENSMUSP00000109670 TRANSLATION protein_coding - CCDS37400.1 5 2126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.2407 27 0.0 MINOR ENSMUSG00000022961 Son ENSMUST00000147891 ENSMUSP00000122544 TRANSLATION nonsense_mediated_decay start - 1 478.0 0.0 1.5 0.0 38.1 0.0 -4,-6 0.0112 3 -2.0 MINOR ENSMUSG00000022961 Son ENSMUST00000117633 ENSMUSP00000112453 TRANSLATION protein_coding - - 5 2477.0 0.0 2.25 0.0 141.5 0.0 -4,-5 0.5578 36 8.0 PRINCIPAL:3 ENSMUSG00000022961 Son ENSMUST00000232108 - NO_TRANSLATION retained_intron ENSMUSG00000022961 Son ENSMUST00000129167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022961 Son ENSMUST00000133589 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022961 Son ENSMUST00000122302 ENSMUSP00000113615 TRANSLATION protein_coding - - 5 454.0 0.0 2.25 2.1 93.3 0.0 -4,-5 0.9373 10 9.0 MINOR ENSMUSG00000022961 Son ENSMUST00000119368 ENSMUSP00000113129 TRANSLATION protein_coding - - 5 2321.0 0.0 0.0 0.0 37.3 0.0 -4,-5 0.1508 28 0.0 MINOR ENSMUSG00000022961 Son ENSMUST00000114037 ENSMUSP00000109671 TRANSLATION protein_coding - CCDS37399.1 1 2444.0 0.0 2.25 0.0 130.6 0.0 -4,-5 0.4858 33 8.0 ALTERNATIVE:2 ENSMUSG00000022961 Son ENSMUST00000151503 - NO_TRANSLATION retained_intron ENSMUSG00000022961 Son ENSMUST00000145235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022961 Son ENSMUST00000147461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022961 Son ENSMUST00000140312 ENSMUSP00000122320 TRANSLATION nonsense_mediated_decay - - 5 2343.0 0.0 1.5 0.0 37.3 0.0 -4,-5 0.1533 28 -2.0 MINOR ENSMUSG00000003527 Ess2 ENSMUST00000231921 - NO_TRANSLATION retained_intron ENSMUSG00000003527 Ess2 ENSMUST00000003621 ENSMUSP00000003621 TRANSLATION protein_coding - CCDS28013.1 1 480.0 0.0 0.0 11.0 248.9 0.0 -3,0 1.0 8 3.332 PRINCIPAL:4 ENSMUSG00000003527 Ess2 ENSMUST00000232423 ENSMUSP00000156085 TRANSLATION protein_coding - - - 479.0 0.0 0.0 13.0 247.8 0.0 -3,0 0.8704 8 4.0 ALTERNATIVE:1 ENSMUSG00000003527 Ess2 ENSMUST00000232111 - NO_TRANSLATION retained_intron ENSMUSG00000003527 Ess2 ENSMUST00000232366 - NO_TRANSLATION retained_intron ENSMUSG00000022528 Hes1 ENSMUST00000161676 - NO_TRANSLATION retained_intron ENSMUSG00000022528 Hes1 ENSMUST00000023171 ENSMUSP00000023171 TRANSLATION protein_coding - CCDS28098.1 1 282.0 0.0 3.1 5.1 122.0 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000022528 Hes1 ENSMUST00000161839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022528 Hes1 ENSMUST00000160592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060636 Rpl35a ENSMUST00000115075 ENSMUSP00000110727 TRANSLATION protein_coding - CCDS28126.1 1 110.0 0.0 2.33 33.9 160.9 0.0 -4,-1 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000060636 Rpl35a ENSMUST00000115078 ENSMUSP00000110730 TRANSLATION protein_coding - CCDS28126.1 1 110.0 0.0 2.33 33.9 160.9 0.0 -4,-1 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000060636 Rpl35a ENSMUST00000232188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060636 Rpl35a ENSMUST00000137720 - NO_TRANSLATION retained_intron ENSMUSG00000060636 Rpl35a ENSMUST00000115076 ENSMUSP00000110728 TRANSLATION protein_coding - CCDS28126.1 2 110.0 0.0 2.33 33.9 160.9 0.0 -4,-1 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000060636 Rpl35a ENSMUST00000133785 - NO_TRANSLATION retained_intron ENSMUSG00000060636 Rpl35a ENSMUST00000078804 ENSMUSP00000077857 TRANSLATION protein_coding - CCDS28126.1 1 110.0 0.0 2.33 33.9 160.9 0.0 -4,-1 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000060636 Rpl35a ENSMUST00000115079 ENSMUSP00000110731 TRANSLATION protein_coding - CCDS28126.1 2 110.0 0.0 2.33 33.9 160.9 0.0 -4,-1 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000022789 Dnm1l ENSMUST00000023477 ENSMUSP00000023477 TRANSLATION protein_coding - CCDS27984.1 1 699.0 17.0 11.966 27.1 645.6 0.0 -4,-7 1.0 33 17.472 ALTERNATIVE:1 ENSMUSG00000022789 Dnm1l ENSMUST00000115749 ENSMUSP00000111415 TRANSLATION protein_coding - - 1 587.0 9.0 7.966 3.3 505.7 0.0 -4,-5 0.0386 27 2.684 MINOR ENSMUSG00000022789 Dnm1l ENSMUST00000230958 - NO_TRANSLATION retained_intron ENSMUSG00000022789 Dnm1l ENSMUST00000096229 ENSMUSP00000093945 TRANSLATION protein_coding - CCDS27985.1 1 712.0 17.0 11.966 23.7 643.9 0.0 -4,-7 0.9697 35 16.618 PRINCIPAL:3 ENSMUSG00000022789 Dnm1l ENSMUST00000230980 ENSMUSP00000155155 TRANSLATION protein_coding - CCDS70689.1 - 716.0 17.0 12.23 8.5 643.4 0.0 -4,-7 0.5498 33 14.814 MINOR ENSMUSG00000022789 Dnm1l ENSMUST00000230038 ENSMUSP00000155605 TRANSLATION protein_coding - - - 221.0 8.0 5.25 0.0 177.8 0.0 -4,-7 0.0 9 0.334 MINOR ENSMUSG00000022789 Dnm1l ENSMUST00000230022 ENSMUSP00000155429 TRANSLATION protein_coding - - - 612.0 9.0 9.466 0.0 569.9 0.0 -4,-5 0.0027 29 2.806 MINOR ENSMUSG00000080717 B230307C23Rik ENSMUST00000183578 - NO_TRANSLATION retained_intron ENSMUSG00000080717 B230307C23Rik ENSMUST00000231936 ENSMUSP00000155950 TRANSLATION protein_coding - - - 72.0 0.0 1.75 0.0 74.9 0.0 -4,-5 0.0 - 3.402 MINOR ENSMUSG00000080717 B230307C23Rik ENSMUST00000232308 ENSMUSP00000155960 TRANSLATION protein_coding - - - 110.0 0.0 2.58 0.0 74.9 0.0 -4,-5 0.0 - 5.058 MINOR ENSMUSG00000080717 B230307C23Rik ENSMUST00000231913 ENSMUSP00000156259 TRANSLATION protein_coding - - - 72.0 0.0 1.75 0.0 74.9 0.0 -4,-5 0.0 - 3.402 MINOR ENSMUSG00000080717 B230307C23Rik ENSMUST00000249385 ENSMUSP00000159743 TRANSLATION protein_coding - - - 689.0 77.0 3.05 0.0 392.1 0.0 -4,-5 0.8184 - 18.0 PRINCIPAL:1 ENSMUSG00000080717 B230307C23Rik ENSMUST00000232387 ENSMUSP00000156366 TRANSLATION protein_coding - - - 72.0 0.0 1.75 0.0 74.9 0.0 -4,-5 0.0 - 3.402 MINOR ENSMUSG00000080717 B230307C23Rik ENSMUST00000122450 ENSMUSP00000113241 TRANSLATION protein_coding - - 1 64.0 0.0 1.75 0.4 74.9 0.0 -4,-5 0.0 - 3.402 MINOR ENSMUSG00000080717 B230307C23Rik ENSMUST00000232278 ENSMUSP00000156187 TRANSLATION protein_coding - - - 73.0 0.0 1.33 0.0 74.9 0.0 -4,-5 0.0 - 2.562 MINOR ENSMUSG00000022701 Ccdc191 ENSMUST00000145999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022701 Ccdc191 ENSMUST00000151183 ENSMUSP00000119428 TRANSLATION protein_coding stop - 2 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.023 - -2.0 MINOR ENSMUSG00000022701 Ccdc191 ENSMUST00000122440 ENSMUSP00000113814 TRANSLATION protein_coding start - 5 469.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.053 3 -2.0 MINOR ENSMUSG00000022701 Ccdc191 ENSMUST00000122014 - NO_TRANSLATION retained_intron ENSMUSG00000022701 Ccdc191 ENSMUST00000132859 ENSMUSP00000116078 TRANSLATION protein_coding - - 5 825.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6281 3 0.0 PRINCIPAL:2 ENSMUSG00000022701 Ccdc191 ENSMUST00000178400 ENSMUSP00000137597 TRANSLATION protein_coding - CCDS57030.1 5 883.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.3549 4 0.0 ALTERNATIVE:2 ENSMUSG00000022665 Ccdc80 ENSMUST00000061050 ENSMUSP00000058752 TRANSLATION protein_coding - CCDS28192.1 1 949.0 0.0 1.0 2.5 324.0 0.0 2,-3 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000022665 Ccdc80 ENSMUST00000099498 ENSMUSP00000097097 TRANSLATION protein_coding - CCDS28192.1 1 949.0 0.0 1.0 2.5 324.0 0.0 2,-3 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000022665 Ccdc80 ENSMUST00000138048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022665 Ccdc80 ENSMUST00000134924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022665 Ccdc80 ENSMUST00000155800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022665 Ccdc80 ENSMUST00000139509 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047854 Stx19 ENSMUST00000055557 ENSMUSP00000055901 TRANSLATION protein_coding - CCDS28262.1 1 292.0 0.0 0.4 11.0 192.5 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022763 Aifm3 ENSMUST00000232421 - NO_TRANSLATION retained_intron ENSMUSG00000022763 Aifm3 ENSMUST00000023448 ENSMUSP00000023448 TRANSLATION protein_coding - CCDS28003.1 1 598.0 49.0 14.75 27.6 147.8 0.0 -4,-5 1.0 14 17.34 ALTERNATIVE:1 ENSMUSG00000022763 Aifm3 ENSMUST00000231508 - NO_TRANSLATION retained_intron ENSMUSG00000022763 Aifm3 ENSMUST00000232359 - NO_TRANSLATION retained_intron ENSMUSG00000022763 Aifm3 ENSMUST00000115685 ENSMUSP00000111349 TRANSLATION protein_coding - CCDS79430.1 1 605.0 49.0 15.08 22.4 147.8 0.0 -4,-5 0.9963 15 17.22 PRINCIPAL:3 ENSMUSG00000022763 Aifm3 ENSMUST00000231800 - NO_TRANSLATION retained_intron ENSMUSG00000118559 A930007A09Rik ENSMUST00000239037 ENSMUSP00000159217 TRANSLATION protein_coding - - - 636.0 0.0 0.0 0.0 99.6 0.0 -4,-7 0.7521 3 6.0 PRINCIPAL:1 ENSMUSG00000004366 Sst ENSMUST00000004480 ENSMUSP00000004480 TRANSLATION protein_coding - CCDS28080.1 1 116.0 0.0 0.4 31.9 45.7 0.0 4,-1 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000039830 Olig2 ENSMUST00000035608 ENSMUSP00000036797 TRANSLATION protein_coding - CCDS28323.1 1 323.0 0.0 0.4 6.5 43.9 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000022544 Eef2kmt ENSMUST00000139584 ENSMUSP00000123572 TRANSLATION protein_coding stop - 1 322.0 19.0 6.5 0.0 207.8 0.0 -4,-5 0.0569 6 -2.0 MINOR ENSMUSG00000022544 Eef2kmt ENSMUST00000132225 - NO_TRANSLATION retained_intron ENSMUSG00000022544 Eef2kmt ENSMUST00000140718 - NO_TRANSLATION retained_intron ENSMUSG00000022544 Eef2kmt ENSMUST00000064635 ENSMUSP00000068003 TRANSLATION protein_coding - CCDS27935.1 1 335.0 19.0 7.5 0.4 208.2 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000022544 Eef2kmt ENSMUST00000129729 - NO_TRANSLATION retained_intron ENSMUSG00000022544 Eef2kmt ENSMUST00000230238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025610 Map3k7cl ENSMUST00000026700 ENSMUSP00000026700 TRANSLATION protein_coding - CCDS28292.1 1 142.0 0.0 2.0 24.2 0.0 0.0 -4,-6 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000022674 Ube2v2 ENSMUST00000229244 - NO_TRANSLATION retained_intron ENSMUSG00000022674 Ube2v2 ENSMUST00000096234 ENSMUSP00000093951 TRANSLATION protein_coding - - 3 105.0 0.0 2.5 18.8 62.3 0.0 -4,-6 0.597 4 11.108 MINOR ENSMUSG00000022674 Ube2v2 ENSMUST00000115776 ENSMUSP00000111442 TRANSLATION protein_coding - CCDS49771.1 1 103.0 0.0 2.83 7.0 0.0 0.0 -4,-5 0.1334 2 4.682 MINOR ENSMUSG00000022674 Ube2v2 ENSMUST00000118236 ENSMUSP00000112802 TRANSLATION protein_coding - - 5 63.0 0.0 1.5 0.0 0.0 0.0 -4,-2 0.0 2 1.338 MINOR ENSMUSG00000022674 Ube2v2 ENSMUST00000229859 ENSMUSP00000155832 TRANSLATION nonsense_mediated_decay - - - 105.0 0.0 2.5 18.8 62.3 0.0 -4,-6 0.597 4 -2.0 MINOR ENSMUSG00000022674 Ube2v2 ENSMUST00000115777 ENSMUSP00000111443 TRANSLATION protein_coding - CCDS37265.1 1 145.0 0.0 3.83 36.2 65.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000022672 Prkdc ENSMUST00000023352 ENSMUSP00000023352 TRANSLATION protein_coding - CCDS27978.1 1 4128.0 0.0 71.1425 0.1 1037.0 0.0 -4,-7 1.0 50 12.0 PRINCIPAL:1 ENSMUSG00000022672 Prkdc ENSMUST00000182134 - NO_TRANSLATION retained_intron ENSMUSG00000000028 Cdc45 ENSMUST00000115585 ENSMUSP00000111248 TRANSLATION protein_coding stop - 2 136.0 0.0 4.0 0.0 125.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000000028 Cdc45 ENSMUST00000231819 - NO_TRANSLATION retained_intron ENSMUSG00000000028 Cdc45 ENSMUST00000000028 ENSMUSP00000000028 TRANSLATION protein_coding - CCDS28027.1 1 566.0 0.0 14.61 33.4 498.3 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000000028 Cdc45 ENSMUST00000096990 ENSMUSP00000094753 TRANSLATION protein_coding - CCDS49788.1 1 520.0 0.0 13.61 1.0 453.9 0.0 -4,-6 0.0363 2 7.338 MINOR ENSMUSG00000062433 Krtap6-2 ENSMUST00000082065 ENSMUSP00000139661 TRANSLATION protein_coding - CCDS79482.1 - 155.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8672 1 0.0 PRINCIPAL:1 ENSMUSG00000022805 Cfap91 ENSMUST00000114740 ENSMUSP00000110388 TRANSLATION protein_coding - - 1 345.0 0.0 0.0 0.0 208.0 0.0 -4,-5 0.5538 4 2.0 ALTERNATIVE:2 ENSMUSG00000022805 Cfap91 ENSMUST00000023501 ENSMUSP00000023501 TRANSLATION protein_coding - CCDS37341.1 1 783.0 0.0 0.0 0.0 210.9 0.0 -4,-5 0.4168 5 2.0 PRINCIPAL:3 ENSMUSG00000003234 Abcf3 ENSMUST00000231590 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003234 Abcf3 ENSMUST00000154660 - NO_TRANSLATION retained_intron ENSMUSG00000003234 Abcf3 ENSMUST00000135861 - NO_TRANSLATION retained_intron ENSMUSG00000003234 Abcf3 ENSMUST00000003319 ENSMUSP00000003319 TRANSLATION protein_coding - CCDS28049.1 1 709.0 27.0 13.51 24.8 136.1 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000003234 Abcf3 ENSMUST00000231258 ENSMUSP00000156298 TRANSLATION protein_coding start/stop - - 192.0 9.0 4.58 0.0 24.4 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000003234 Abcf3 ENSMUST00000232127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003234 Abcf3 ENSMUST00000152339 - NO_TRANSLATION retained_intron ENSMUSG00000003234 Abcf3 ENSMUST00000232680 ENSMUSP00000156048 TRANSLATION protein_coding stop - - 577.0 19.0 10.76 0.0 99.2 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000003234 Abcf3 ENSMUST00000232490 ENSMUSP00000156056 TRANSLATION protein_coding start/stop - - 177.0 9.0 0.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000003234 Abcf3 ENSMUST00000148679 ENSMUSP00000155980 TRANSLATION protein_coding start - 1 109.0 7.0 2.778 0.0 35.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022663 Atg3 ENSMUST00000150390 - NO_TRANSLATION retained_intron ENSMUSG00000022663 Atg3 ENSMUST00000023343 ENSMUSP00000023343 TRANSLATION protein_coding - CCDS28194.1 1 314.0 0.0 2.715 27.5 250.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000063358 Mapk1 ENSMUST00000069107 ENSMUSP00000065983 TRANSLATION protein_coding - CCDS27992.1 1 358.0 18.0 8.33 13.8 232.0 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000063358 Mapk1 ENSMUST00000231821 ENSMUSP00000156250 TRANSLATION protein_coding start - - 108.0 0.0 3.0 0.0 37.2 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000063358 Mapk1 ENSMUST00000115731 ENSMUSP00000111396 TRANSLATION protein_coding - CCDS27992.1 1 358.0 18.0 8.33 13.8 232.0 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000063358 Mapk1 ENSMUST00000232630 - NO_TRANSLATION retained_intron ENSMUSG00000063358 Mapk1 ENSMUST00000232067 ENSMUSP00000156214 TRANSLATION protein_coding start - - 134.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000063358 Mapk1 ENSMUST00000232480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063358 Mapk1 ENSMUST00000232281 - NO_TRANSLATION retained_intron ENSMUSG00000063358 Mapk1 ENSMUST00000231420 - NO_TRANSLATION retained_intron ENSMUSG00000063358 Mapk1 ENSMUST00000232611 ENSMUSP00000156154 TRANSLATION protein_coding - CCDS27992.1 - 358.0 18.0 8.33 13.8 232.0 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000022931 Krtap15 ENSMUST00000187823 ENSMUSP00000140888 TRANSLATION protein_coding - CCDS79477.1 - 150.0 0.0 0.0 1.1 55.1 0.0 -4,-2 0.5258 1 3.508 PRINCIPAL:1 ENSMUSG00000022931 Krtap15 ENSMUST00000023648 ENSMUSP00000023648 TRANSLATION protein_coding start/stop - 5 127.0 0.0 0.0 0.0 113.3 0.0 -4,-5 0.0501 - -2.0 MINOR ENSMUSG00000060459 Kng2 ENSMUST00000100046 ENSMUSP00000097623 TRANSLATION protein_coding - CCDS28072.1 1 644.0 0.0 3.787 0.0 226.6 0.0 3,-1 0.3432 7 8.0 ALTERNATIVE:2 ENSMUSG00000060459 Kng2 ENSMUST00000160243 ENSMUSP00000124161 TRANSLATION nonsense_mediated_decay - - 2 177.0 0.0 1.416 0.0 61.0 0.0 3,-1 0.0 3 -2.0 MINOR ENSMUSG00000060459 Kng2 ENSMUST00000231835 ENSMUSP00000156074 TRANSLATION nonsense_mediated_decay - - - 46.0 0.0 0.5 0.0 25.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060459 Kng2 ENSMUST00000115349 ENSMUSP00000111006 TRANSLATION protein_coding - CCDS49801.1 1 433.0 0.0 3.787 2.6 226.6 0.0 3,-1 1.0 7 9.0 PRINCIPAL:2 ENSMUSG00000060459 Kng2 ENSMUST00000232459 ENSMUSP00000156311 TRANSLATION protein_coding stop - - 159.0 0.0 1.78 0.0 99.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000060459 Kng2 ENSMUST00000039338 ENSMUSP00000046867 TRANSLATION protein_coding - CCDS49802.1 1 462.0 0.0 3.787 0.0 226.6 0.0 3,-1 0.3082 7 8.0 ALTERNATIVE:2 ENSMUSG00000060459 Kng2 ENSMUST00000231872 ENSMUSP00000155884 TRANSLATION protein_coding start - - 137.0 0.0 0.96 0.0 36.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000107002 Ncbp2as2 ENSMUST00000202722 ENSMUSP00000143811 TRANSLATION protein_coding - - - 95.0 0.0 0.0 5.7 0.0 0.0 -4,-1 0.7852 2 2.0 PRINCIPAL:1 ENSMUSG00000013089 Etv5 ENSMUST00000170803 ENSMUSP00000128338 TRANSLATION nonsense_mediated_decay start - 5 89.0 0.0 0.0 0.0 92.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000013089 Etv5 ENSMUST00000168774 ENSMUSP00000131791 TRANSLATION protein_coding - - 1 528.0 0.0 2.6 0.4 610.1 0.0 -4,-5 0.1112 - 9.042 MINOR ENSMUSG00000013089 Etv5 ENSMUST00000079601 ENSMUSP00000078551 TRANSLATION protein_coding - CCDS37299.1 1 510.0 0.0 2.6 9.4 659.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000013089 Etv5 ENSMUST00000165506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013089 Etv5 ENSMUST00000170393 ENSMUSP00000132210 TRANSLATION protein_coding stop - 3 94.0 0.0 0.0 0.0 186.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004460 Dnajb11 ENSMUST00000178320 ENSMUSP00000137542 TRANSLATION protein_coding - CCDS28070.1 5 358.0 0.0 5.05 20.0 218.3 0.0 3,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000004460 Dnajb11 ENSMUST00000166487 ENSMUSP00000126828 TRANSLATION protein_coding - CCDS28070.1 1 358.0 0.0 5.05 20.0 218.3 0.0 3,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000004460 Dnajb11 ENSMUST00000133013 ENSMUSP00000156315 TRANSLATION protein_coding start - 3 127.0 0.0 2.1 0.0 79.7 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000004460 Dnajb11 ENSMUST00000004574 ENSMUSP00000004574 TRANSLATION protein_coding - CCDS28070.1 1 358.0 0.0 5.05 20.0 218.3 0.0 3,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000059632 Krtap8-1 ENSMUST00000072280 ENSMUSP00000072129 TRANSLATION protein_coding - CCDS49901.1 - 61.0 0.0 0.0 7.3 0.0 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000046516 Cox17 ENSMUST00000134709 - NO_TRANSLATION retained_intron ENSMUSG00000046516 Cox17 ENSMUST00000144812 - NO_TRANSLATION retained_intron ENSMUSG00000046516 Cox17 ENSMUST00000050273 ENSMUSP00000054086 TRANSLATION protein_coding - CCDS28165.1 1 63.0 6.0 1.75 24.6 77.2 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000046516 Cox17 ENSMUST00000120495 ENSMUSP00000113430 TRANSLATION protein_coding - CCDS28165.1 1 63.0 6.0 1.75 24.6 77.2 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000046516 Cox17 ENSMUST00000152868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046516 Cox17 ENSMUST00000156026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046516 Cox17 ENSMUST00000249256 ENSMUSP00000159636 TRANSLATION protein_coding,RT - CCDS28165.1 - 63.0 6.0 1.75 24.6 77.2 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000116933 Atp5po ENSMUST00000159295 ENSMUSP00000125172 TRANSLATION protein_coding,RT start/stop - 5 176.0 0.0 2.0 0.0 50.1 0.0 -4,-6 0.6491 - -2.0 PRINCIPAL:1 ENSMUSG00000033306 Lpp ENSMUST00000231352 - NO_TRANSLATION retained_intron ENSMUSG00000033306 Lpp ENSMUST00000078988 ENSMUSP00000078005 TRANSLATION protein_coding - CCDS28083.1 1 613.0 24.0 5.0 9.7 123.0 0.0 -4,-6 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000033306 Lpp ENSMUST00000115314 ENSMUSP00000110969 TRANSLATION protein_coding - CCDS49807.1 1 488.0 24.0 5.0 0.3 123.0 0.0 -4,-6 0.1995 18 18.0 MINOR ENSMUSG00000033306 Lpp ENSMUST00000231279 - NO_TRANSLATION retained_intron ENSMUSG00000033306 Lpp ENSMUST00000232546 ENSMUSP00000156178 TRANSLATION nonsense_mediated_decay - - - 51.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033306 Lpp ENSMUST00000038053 ENSMUSP00000036304 TRANSLATION protein_coding - CCDS28083.1 1 613.0 24.0 5.0 9.7 123.0 0.0 -4,-6 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000035506 Slc12a8 ENSMUST00000059056 ENSMUSP00000062337 TRANSLATION protein_coding - CCDS49834.1 2 705.0 0.0 5.0 0.4 162.8 22.0 -4,-7 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000035506 Slc12a8 ENSMUST00000117134 ENSMUSP00000112925 TRANSLATION protein_coding - - 1 426.0 0.0 2.1 0.0 74.1 8.0 -4,-6 0.0056 4 0.876 MINOR ENSMUSG00000035506 Slc12a8 ENSMUST00000122314 ENSMUSP00000113901 TRANSLATION protein_coding - - 5 459.0 0.0 2.1 0.0 74.1 8.0 -4,-6 0.0056 5 0.876 MINOR ENSMUSG00000035506 Slc12a8 ENSMUST00000149291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035506 Slc12a8 ENSMUST00000122427 ENSMUSP00000113164 TRANSLATION protein_coding - - 5 584.0 0.0 4.55 0.0 140.9 19.0 -4,-7 0.0144 3 9.786 MINOR ENSMUSG00000035506 Slc12a8 ENSMUST00000119173 ENSMUSP00000113633 TRANSLATION protein_coding - CCDS37317.1 1 625.0 0.0 4.4 0.0 116.1 20.0 -4,-5 0.026 4 7.998 MINOR ENSMUSG00000035506 Slc12a8 ENSMUST00000121925 ENSMUSP00000112439 TRANSLATION protein_coding - CCDS49834.1 5 705.0 0.0 5.0 0.4 162.8 22.0 -4,-7 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000002845 Tmem39a ENSMUST00000170097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002845 Tmem39a ENSMUST00000002924 ENSMUSP00000002924 TRANSLATION protein_coding - CCDS28171.1 1 486.0 0.0 0.0 27.8 650.4 7.0 -4,-1 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000002845 Tmem39a ENSMUST00000171687 ENSMUSP00000126218 TRANSLATION protein_coding - CCDS57029.1 1 418.0 0.0 0.0 2.2 375.0 6.0 -4,-1 0.1135 - 0.18 MINOR ENSMUSG00000002845 Tmem39a ENSMUST00000166854 ENSMUSP00000127040 TRANSLATION protein_coding start - 5 155.0 0.0 0.0 0.0 139.6 2.0 2,-3 0.0043 - -2.0 MINOR ENSMUSG00000002845 Tmem39a ENSMUST00000163884 ENSMUSP00000132515 TRANSLATION protein_coding - CCDS28171.1 1 486.0 0.0 0.0 27.8 650.4 7.0 -4,-1 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000002845 Tmem39a ENSMUST00000166235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002845 Tmem39a ENSMUST00000167033 - NO_TRANSLATION retained_intron ENSMUSG00000002845 Tmem39a ENSMUST00000163549 - NO_TRANSLATION retained_intron ENSMUSG00000002845 Tmem39a ENSMUST00000165631 ENSMUSP00000130186 TRANSLATION protein_coding start - 5 145.0 0.0 0.0 0.0 155.1 3.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000002845 Tmem39a ENSMUST00000171064 - NO_TRANSLATION retained_intron ENSMUSG00000002845 Tmem39a ENSMUST00000169554 ENSMUSP00000127143 TRANSLATION protein_coding start - 5 192.0 0.0 0.0 0.0 223.1 3.0 -4,-7 0.0024 - -2.0 MINOR ENSMUSG00000002845 Tmem39a ENSMUST00000163133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002845 Tmem39a ENSMUST00000163948 ENSMUSP00000130791 TRANSLATION protein_coding stop - 5 164.0 0.0 0.0 0.0 128.7 1.0 -4,-1 0.0016 - -2.0 MINOR ENSMUSG00000002845 Tmem39a ENSMUST00000165140 - NO_TRANSLATION retained_intron ENSMUSG00000022797 Tfrc ENSMUST00000128285 - NO_TRANSLATION retained_intron ENSMUSG00000022797 Tfrc ENSMUST00000120680 ENSMUSP00000113028 TRANSLATION protein_coding - - 2 515.0 5.0 9.0 0.0 70.1 1.0 -4,-6 0.0011 16 8.432 MINOR ENSMUSG00000022797 Tfrc ENSMUST00000124243 ENSMUSP00000123423 TRANSLATION protein_coding stop - 5 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0065 - -2.0 MINOR ENSMUSG00000022797 Tfrc ENSMUST00000231912 - NO_TRANSLATION retained_intron ENSMUSG00000022797 Tfrc ENSMUST00000155929 - NO_TRANSLATION retained_intron ENSMUSG00000022797 Tfrc ENSMUST00000137901 - NO_TRANSLATION retained_intron ENSMUSG00000022797 Tfrc ENSMUST00000023486 ENSMUSP00000023486 TRANSLATION protein_coding - CCDS28123.1 1 763.0 5.0 14.25 6.9 112.9 1.0 -4,-6 1.0 24 19.0 PRINCIPAL:1 ENSMUSG00000022863 Btg3 ENSMUST00000231353 ENSMUSP00000156138 TRANSLATION protein_coding start - - 152.0 0.0 3.4 0.0 111.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022863 Btg3 ENSMUST00000023570 ENSMUSP00000023570 TRANSLATION protein_coding - CCDS28277.1 1 252.0 0.0 4.15 11.0 146.5 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000022863 Btg3 ENSMUST00000148124 ENSMUSP00000119706 TRANSLATION protein_coding stop - 5 137.0 0.0 3.75 0.0 146.5 0.0 -4,-7 0.0059 1 -2.0 MINOR ENSMUSG00000022971 Ifnar2 ENSMUST00000117836 ENSMUSP00000113358 TRANSLATION protein_coding - CCDS49910.1 1 248.0 0.0 3.482 0.0 119.4 0.0 1,-4 0.332 2 8.0 ALTERNATIVE:2 ENSMUSG00000022971 Ifnar2 ENSMUST00000139503 ENSMUSP00000135322 TRANSLATION protein_coding stop - 1 48.0 0.0 0.7 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022971 Ifnar2 ENSMUST00000089042 ENSMUSP00000086443 TRANSLATION protein_coding - CCDS84262.1 1 247.0 0.0 3.482 0.0 119.4 0.0 1,-4 0.332 1 8.0 ALTERNATIVE:2 ENSMUSG00000022971 Ifnar2 ENSMUST00000023693 ENSMUSP00000023693 TRANSLATION protein_coding - CCDS28325.1 1 513.0 0.0 3.482 0.1 119.4 0.0 1,-4 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000022971 Ifnar2 ENSMUST00000134491 ENSMUSP00000134796 TRANSLATION protein_coding stop - 3 117.0 0.0 1.632 0.0 56.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000071637 Cebpd ENSMUST00000210772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071637 Cebpd ENSMUST00000096232 ENSMUSP00000148145 TRANSLATION protein_coding - CCDS84207.1 - 268.0 0.0 0.5 3.3 64.2 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000044227 Gm9789 ENSMUST00000062524 ENSMUSP00000055898 TRANSLATION protein_coding - - - 52.0 0.0 0.0 0.0 33.5 0.0 -4,-5 0.6987 - 6.0 PRINCIPAL:1 ENSMUSG00000057880 Abat ENSMUST00000115838 ENSMUSP00000111504 TRANSLATION protein_coding - - 2 204.0 4.0 4.95 0.0 114.8 0.0 -4,0 0.0003 9 0.0 MINOR ENSMUSG00000057880 Abat ENSMUST00000065987 ENSMUSP00000063548 TRANSLATION protein_coding - CCDS27939.1 1 500.0 14.0 12.66 30.7 462.8 0.0 -4,0 1.0 29 22.0 PRINCIPAL:1 ENSMUSG00000057880 Abat ENSMUST00000138987 ENSMUSP00000116686 TRANSLATION protein_coding start/stop - 3 232.0 7.0 6.58 0.0 120.7 0.0 -4,-2 0.0 9 -2.0 MINOR ENSMUSG00000057880 Abat ENSMUST00000115839 ENSMUSP00000111505 TRANSLATION protein_coding - CCDS49754.1 1 444.0 9.0 11.66 0.0 355.2 0.0 -4,0 0.013 24 6.666 MINOR ENSMUSG00000057880 Abat ENSMUST00000140795 - NO_TRANSLATION retained_intron ENSMUSG00000057880 Abat ENSMUST00000144444 ENSMUSP00000121881 TRANSLATION protein_coding start - 3 109.0 7.0 2.37 0.0 64.6 0.0 -4,-2 0.0003 4 -2.0 MINOR ENSMUSG00000057880 Abat ENSMUST00000128459 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079625 Tm4sf19 ENSMUST00000115149 ENSMUSP00000110802 TRANSLATION protein_coding - CCDS49827.1 1 206.0 0.0 1.898 3.5 185.3 0.0 -3,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000033501 Crygs ENSMUST00000040592 ENSMUSP00000043588 TRANSLATION protein_coding - CCDS28069.1 1 178.0 3.0 2.33 22.6 205.1 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000006998 Psmd2 ENSMUST00000231897 ENSMUSP00000156260 TRANSLATION protein_coding start - - 139.0 0.0 2.66 0.0 0.0 0.0 0,-2 0.0015 3 -2.0 MINOR ENSMUSG00000006998 Psmd2 ENSMUST00000232629 ENSMUSP00000156035 TRANSLATION protein_coding stop - - 142.0 0.0 3.25 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000006998 Psmd2 ENSMUST00000232513 ENSMUSP00000156092 TRANSLATION nonsense_mediated_decay start - - 97.0 0.0 2.0 0.0 0.0 0.0 0,-2 0.0015 2 -2.0 MINOR ENSMUSG00000006998 Psmd2 ENSMUST00000167869 - NO_TRANSLATION retained_intron ENSMUSG00000006998 Psmd2 ENSMUST00000007212 ENSMUSP00000007212 TRANSLATION protein_coding - CCDS28053.1 1 908.0 0.0 22.16 13.0 54.3 0.0 -4,-5 1.0 40 16.0 PRINCIPAL:1 ENSMUSG00000006998 Psmd2 ENSMUST00000169195 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006998 Psmd2 ENSMUST00000172207 ENSMUSP00000127496 TRANSLATION nonsense_mediated_decay - - 1 60.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000006998 Psmd2 ENSMUST00000169184 - NO_TRANSLATION retained_intron ENSMUSG00000006998 Psmd2 ENSMUST00000166071 - NO_TRANSLATION retained_intron ENSMUSG00000051728 Fam243 ENSMUST00000062638 ENSMUSP00000049694 TRANSLATION protein_coding - CCDS28335.1 - 251.0 0.0 0.0 14.2 0.0 0.0 -4,-1 1.0 1 4.0 PRINCIPAL:1 ENSMUSG00000058368 Krtap21-1 ENSMUST00000078422 ENSMUSP00000077524 TRANSLATION protein_coding - CCDS28311.1 - 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000005580 Adcy9 ENSMUST00000117801 ENSMUSP00000113498 TRANSLATION protein_coding - CCDS27917.1 1 1353.0 7.0 4.75 12.6 383.0 12.0 -4,-5 1.0 25 21.0 PRINCIPAL:1 ENSMUSG00000005580 Adcy9 ENSMUST00000120080 ENSMUSP00000113421 TRANSLATION protein_coding - CCDS79418.1 1 1116.0 7.0 3.85 0.0 383.0 8.0 2,-3 0.2534 24 16.2 MINOR ENSMUSG00000005580 Adcy9 ENSMUST00000005719 ENSMUSP00000005719 TRANSLATION protein_coding - CCDS27917.1 1 1353.0 7.0 4.75 12.6 383.0 12.0 -4,-5 1.0 25 21.0 PRINCIPAL:1 ENSMUSG00000116652 Fam246a ENSMUST00000235474 ENSMUSP00000157543 TRANSLATION protein_coding - - - 232.0 2.0 0.0 2.4 0.0 0.0 -4,-2 1.0 1 3.0 PRINCIPAL:2 ENSMUSG00000116652 Fam246a ENSMUST00000231909 ENSMUSP00000157384 TRANSLATION protein_coding - - - 190.0 2.0 0.0 0.0 0.0 0.0 -4,-2 0.044 - 2.0 ALTERNATIVE:2 ENSMUSG00000050761 Gp1bb ENSMUST00000167388 ENSMUSP00000126292 TRANSLATION protein_coding - CCDS49787.1 2 206.0 0.0 1.0 0.8 19.2 1.0 3,-3 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000050761 Gp1bb ENSMUST00000051160 ENSMUSP00000059270 TRANSLATION protein_coding - CCDS28025.1 - 214.0 0.0 1.0 0.0 19.2 1.0 2,-2 0.4448 1 8.0 ALTERNATIVE:2 ENSMUSG00000022890 Atp5pf ENSMUST00000146225 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022890 Atp5pf ENSMUST00000114191 ENSMUSP00000109829 TRANSLATION protein_coding - CCDS28283.1 5 108.0 0.0 1.93 13.6 147.5 0.0 -3,0 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022890 Atp5pf ENSMUST00000114193 ENSMUSP00000109831 TRANSLATION protein_coding - CCDS28283.1 2 108.0 0.0 1.93 13.6 147.5 0.0 -3,0 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022890 Atp5pf ENSMUST00000150502 - NO_TRANSLATION retained_intron ENSMUSG00000022890 Atp5pf ENSMUST00000127651 - NO_TRANSLATION retained_intron ENSMUSG00000022890 Atp5pf ENSMUST00000144799 - NO_TRANSLATION retained_intron ENSMUSG00000022890 Atp5pf ENSMUST00000138279 ENSMUSP00000122527 TRANSLATION protein_coding stop - 3 91.0 0.0 1.6 0.9 136.1 0.0 -3,0 0.0252 3 -2.0 MINOR ENSMUSG00000022890 Atp5pf ENSMUST00000140036 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022890 Atp5pf ENSMUST00000023608 ENSMUSP00000023608 TRANSLATION protein_coding - CCDS28283.1 1 108.0 0.0 1.93 13.6 147.5 0.0 -3,0 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022890 Atp5pf ENSMUST00000155956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022890 Atp5pf ENSMUST00000146103 - NO_TRANSLATION retained_intron ENSMUSG00000022890 Atp5pf ENSMUST00000148787 - NO_TRANSLATION retained_intron ENSMUSG00000047531 Rtp2 ENSMUST00000231038 ENSMUSP00000155556 TRANSLATION protein_coding stop - - 237.0 0.0 0.0 0.0 81.7 1.0 -4,-2 0.0389 2 -2.0 MINOR ENSMUSG00000047531 Rtp2 ENSMUST00000061030 ENSMUSP00000062178 TRANSLATION protein_coding - CCDS28081.1 1 223.0 0.0 0.0 7.4 81.7 1.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000022978 Mis18a ENSMUST00000147546 - NO_TRANSLATION retained_intron ENSMUSG00000022978 Mis18a ENSMUST00000129171 - NO_TRANSLATION retained_intron ENSMUSG00000022978 Mis18a ENSMUST00000099554 ENSMUSP00000097150 TRANSLATION protein_coding - CCDS28316.1 1 204.0 4.0 1.425 0.0 104.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022659 Gcsam ENSMUST00000161347 ENSMUSP00000123853 TRANSLATION protein_coding - CCDS49861.1 1 181.0 0.0 0.0 5.6 128.7 0.0 -4,-2 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000022659 Gcsam ENSMUST00000023339 ENSMUSP00000023339 TRANSLATION protein_coding - CCDS28199.1 1 159.0 0.0 0.0 1.1 128.7 0.0 -4,-1 0.2324 1 6.044 MINOR ENSMUSG00000050704 2310061N02Rik ENSMUST00000050882 ENSMUSP00000062074 TRANSLATION protein_coding - CCDS49893.1 - 174.0 0.0 0.0 7.3 188.8 0.0 -4,-1 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000022965 Ifngr2 ENSMUST00000023687 ENSMUSP00000023687 TRANSLATION protein_coding - CCDS28327.1 1 332.0 0.0 4.55 0.0 128.1 0.0 2,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022965 Ifngr2 ENSMUST00000127644 ENSMUSP00000119580 TRANSLATION nonsense_mediated_decay - - 5 46.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0029 - -2.0 MINOR ENSMUSG00000022965 Ifngr2 ENSMUST00000130404 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046546 Fam43a ENSMUST00000059078 ENSMUSP00000056555 TRANSLATION protein_coding - CCDS28103.1 - 424.0 0.0 0.0 5.2 254.0 0.0 -3,-4 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000022814 Umps ENSMUST00000023510 ENSMUSP00000023510 TRANSLATION protein_coding - CCDS28136.1 1 481.0 29.0 5.8 12.9 261.4 0.0 -4,-5 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000022814 Umps ENSMUST00000131990 ENSMUSP00000119423 TRANSLATION nonsense_mediated_decay - - 1 57.0 4.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000055789 Ftdc2 ENSMUST00000053249 ENSMUSP00000056475 TRANSLATION protein_coding - CCDS28232.1 1 192.0 0.0 3.8 0.0 36.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022876 Samsn1 ENSMUST00000150248 - NO_TRANSLATION retained_intron ENSMUSG00000022876 Samsn1 ENSMUST00000228147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022876 Samsn1 ENSMUST00000114239 ENSMUSP00000109877 TRANSLATION protein_coding - CCDS37378.1 1 372.0 0.0 3.0 15.2 244.4 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000022876 Samsn1 ENSMUST00000226794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022876 Samsn1 ENSMUST00000139691 - NO_TRANSLATION retained_intron ENSMUSG00000022876 Samsn1 ENSMUST00000227215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022876 Samsn1 ENSMUST00000114240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068167 Csnka2ip ENSMUST00000089279 ENSMUSP00000086692 TRANSLATION protein_coding - CCDS37374.1 - 276.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.2621 - 0.0 ALTERNATIVE:2 ENSMUSG00000068167 Csnka2ip ENSMUST00000209382 ENSMUSP00000147880 TRANSLATION protein_coding - - 5 720.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6265 - 0.0 PRINCIPAL:2 ENSMUSG00000043391 2510009E07Rik ENSMUST00000232634 ENSMUSP00000156172 TRANSLATION nonsense_mediated_decay - - - 63.0 0.0 0.0 0.0 113.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043391 2510009E07Rik ENSMUST00000231592 ENSMUSP00000156243 TRANSLATION protein_coding - - - 63.0 0.0 0.0 0.0 113.8 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000043391 2510009E07Rik ENSMUST00000053336 ENSMUSP00000062303 TRANSLATION protein_coding - CCDS28062.1 1 248.0 0.0 0.0 18.5 432.5 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000043391 2510009E07Rik ENSMUST00000232164 ENSMUSP00000156099 TRANSLATION protein_coding stop - - 140.0 0.0 0.0 0.0 211.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000105547 Iglc3 ENSMUST00000200235 ENSMUSP00000143661 TRANSLATION IG_C_gene start - - 105.0 0.0 1.0 0.0 96.7 0.0 -4,-6 0.7737 1 -2.0 PRINCIPAL:1 ENSMUSG00000068663 Clec16a ENSMUST00000150894 ENSMUSP00000114577 TRANSLATION protein_coding stop - 2 67.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0279 - -2.0 MINOR ENSMUSG00000068663 Clec16a ENSMUST00000115827 ENSMUSP00000111493 TRANSLATION protein_coding - - 1 883.0 0.0 0.0 4.3 0.0 0.0 -4,-1 0.5844 7 1.082 ALTERNATIVE:2 ENSMUSG00000068663 Clec16a ENSMUST00000122856 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068663 Clec16a ENSMUST00000145866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068663 Clec16a ENSMUST00000130148 - NO_TRANSLATION retained_intron ENSMUSG00000068663 Clec16a ENSMUST00000115824 ENSMUSP00000111490 TRANSLATION protein_coding - - 5 1036.0 0.0 0.0 6.0 0.0 0.0 -4,-1 0.8412 7 1.64 ALTERNATIVE:1 ENSMUSG00000068663 Clec16a ENSMUST00000115828 ENSMUSP00000111494 TRANSLATION nonsense_mediated_decay - - 1 667.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0593 6 -2.0 MINOR ENSMUSG00000068663 Clec16a ENSMUST00000038145 ENSMUSP00000040267 TRANSLATION protein_coding - - 1 912.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0752 7 0.0 MINOR ENSMUSG00000068663 Clec16a ENSMUST00000115823 ENSMUSP00000111489 TRANSLATION protein_coding - - 1 522.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0507 6 0.0 MINOR ENSMUSG00000068663 Clec16a ENSMUST00000155633 ENSMUSP00000123189 TRANSLATION protein_coding - CCDS57018.1 1 1034.0 0.0 0.0 7.1 0.0 0.0 -4,-1 1.0 7 2.0 PRINCIPAL:4 ENSMUSG00000068663 Clec16a ENSMUST00000066345 ENSMUSP00000065423 TRANSLATION protein_coding - CCDS37253.1 5 1036.0 0.0 0.0 6.0 0.0 0.0 -4,-1 0.9715 7 1.64 ALTERNATIVE:1 ENSMUSG00000022941 Ripply3 ENSMUST00000023660 ENSMUSP00000023660 TRANSLATION protein_coding - CCDS28347.1 1 152.0 0.0 1.0 0.0 108.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022807 Osbpl11 ENSMUST00000232181 ENSMUSP00000155873 TRANSLATION protein_coding - CCDS28128.1 - 757.0 0.0 4.65 3.5 308.8 0.0 -4,-5 1.0 14 9.0 PRINCIPAL:2 ENSMUSG00000022807 Osbpl11 ENSMUST00000039733 ENSMUSP00000039632 TRANSLATION protein_coding - CCDS28128.1 1 757.0 0.0 4.65 3.5 308.8 0.0 -4,-5 1.0 14 9.0 PRINCIPAL:2 ENSMUSG00000022807 Osbpl11 ENSMUST00000231617 - NO_TRANSLATION retained_intron ENSMUSG00000022807 Osbpl11 ENSMUST00000232100 ENSMUSP00000155970 TRANSLATION protein_coding - - - 751.0 0.0 4.65 1.8 308.8 0.0 -4,-5 0.611 14 8.32 ALTERNATIVE:2 ENSMUSG00000009047 Gm5965 ENSMUST00000238221 ENSMUSP00000158767 TRANSLATION protein_coding - - - 216.0 0.0 0.0 0.0 140.1 0.0 -4,0 0.7144 2 6.0 PRINCIPAL:1 ENSMUSG00000022538 Lsg1 ENSMUST00000124858 - NO_TRANSLATION retained_intron ENSMUSG00000022538 Lsg1 ENSMUST00000117363 ENSMUSP00000112860 TRANSLATION protein_coding - CCDS37311.1 1 644.0 14.0 0.82 2.3 49.3 0.0 -4,-1 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000022538 Lsg1 ENSMUST00000123286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022538 Lsg1 ENSMUST00000143170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022538 Lsg1 ENSMUST00000129004 - NO_TRANSLATION retained_intron ENSMUSG00000022538 Lsg1 ENSMUST00000150499 - NO_TRANSLATION retained_intron ENSMUSG00000022538 Lsg1 ENSMUST00000144666 - NO_TRANSLATION retained_intron ENSMUSG00000022538 Lsg1 ENSMUST00000231238 - NO_TRANSLATION retained_intron ENSMUSG00000022538 Lsg1 ENSMUST00000128561 - NO_TRANSLATION retained_intron ENSMUSG00000051065 Mb21d2 ENSMUST00000232571 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051065 Mb21d2 ENSMUST00000100023 ENSMUSP00000097600 TRANSLATION protein_coding - CCDS28093.1 1 491.0 0.0 2.0 15.5 114.0 0.0 -4,-7 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000022753 Tmem30c ENSMUST00000023434 ENSMUSP00000023434 TRANSLATION protein_coding - CCDS49876.1 5 342.0 0.0 7.0 2.1 282.6 2.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000022753 Tmem30c ENSMUST00000120112 ENSMUSP00000113896 TRANSLATION protein_coding - - 1 292.0 0.0 6.0 0.0 210.2 2.0 -4,-6 0.0017 - 5.658 MINOR ENSMUSG00000022753 Tmem30c ENSMUST00000119407 ENSMUSP00000112989 TRANSLATION protein_coding - CCDS49876.1 1 342.0 0.0 7.0 2.1 282.6 2.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000089774 Slc5a3 ENSMUST00000131098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000089774 Slc5a3 ENSMUST00000113975 ENSMUSP00000109608 TRANSLATION protein_coding - CCDS37403.1 1 718.0 0.0 0.6 20.7 536.8 0.0 -2,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000116930 Gm49711 ENSMUST00000232677 ENSMUSP00000156255 TRANSLATION protein_coding,RT - - - 117.0 0.0 1.5 0.0 31.4 0.0 -4,-7 0.7681 - -2.0 PRINCIPAL:1 ENSMUSG00000005982 Naa60 ENSMUST00000151988 ENSMUSP00000118782 TRANSLATION protein_coding stop - 3 168.0 22.0 5.0 0.0 55.2 0.0 -4,-5 0.0143 - -2.0 MINOR ENSMUSG00000005982 Naa60 ENSMUST00000147949 ENSMUSP00000135141 TRANSLATION nonsense_mediated_decay - - 2 79.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005982 Naa60 ENSMUST00000135093 ENSMUSP00000114615 TRANSLATION nonsense_mediated_decay - - 1 79.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005982 Naa60 ENSMUST00000175809 ENSMUSP00000135810 TRANSLATION protein_coding - - 5 92.0 0.0 2.25 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000005982 Naa60 ENSMUST00000150655 ENSMUSP00000135206 TRANSLATION protein_coding - CCDS37239.1 2 242.0 30.0 6.48 36.9 55.2 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000005982 Naa60 ENSMUST00000186375 ENSMUSP00000140031 TRANSLATION protein_coding - CCDS37239.1 1 242.0 30.0 6.48 36.9 55.2 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000005982 Naa60 ENSMUST00000140832 - NO_TRANSLATION retained_intron ENSMUSG00000005982 Naa60 ENSMUST00000115860 ENSMUSP00000111526 TRANSLATION protein_coding - CCDS37239.1 1 242.0 30.0 6.48 36.9 55.2 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000005982 Naa60 ENSMUST00000176224 ENSMUSP00000135152 TRANSLATION protein_coding - - 5 166.0 20.0 3.98 0.0 0.0 0.0 -4,-5 0.0 - 1.002 MINOR ENSMUSG00000005982 Naa60 ENSMUST00000143537 ENSMUSP00000135188 TRANSLATION nonsense_mediated_decay - - 5 133.0 12.0 3.4 0.0 24.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005982 Naa60 ENSMUST00000176625 ENSMUSP00000134768 TRANSLATION protein_coding - CCDS70676.1 2 177.0 30.0 4.73 6.1 42.5 0.0 -4,-5 0.1417 - 13.69 MINOR ENSMUSG00000049436 Upk1b ENSMUST00000232536 - NO_TRANSLATION retained_intron ENSMUSG00000049436 Upk1b ENSMUST00000057767 ENSMUSP00000052469 TRANSLATION protein_coding - CCDS28174.1 1 260.0 0.0 5.75 27.9 96.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000022503 Nubp1 ENSMUST00000140157 ENSMUSP00000155550 TRANSLATION nonsense_mediated_decay - - 3 121.0 7.0 2.88 0.0 83.3 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000022503 Nubp1 ENSMUST00000143617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022503 Nubp1 ENSMUST00000129280 - NO_TRANSLATION retained_intron ENSMUSG00000022503 Nubp1 ENSMUST00000023146 ENSMUSP00000023146 TRANSLATION protein_coding - CCDS27948.1 1 320.0 13.0 8.13 8.6 334.2 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000022503 Nubp1 ENSMUST00000156338 - NO_TRANSLATION retained_intron ENSMUSG00000022503 Nubp1 ENSMUST00000142771 - NO_TRANSLATION retained_intron ENSMUSG00000022504 Ciita ENSMUST00000023147 ENSMUSP00000023147 TRANSLATION protein_coding - CCDS27950.1 1 1078.0 8.0 3.7885 2.1 183.2 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:2 ENSMUSG00000022504 Ciita ENSMUST00000230395 ENSMUSP00000155517 TRANSLATION protein_coding - - - 1155.0 8.0 3.7885 1.1 183.2 0.0 -4,-7 0.3598 1 14.091 ALTERNATIVE:2 ENSMUSG00000022504 Ciita ENSMUST00000230146 ENSMUSP00000154946 TRANSLATION protein_coding - - - 1075.0 8.0 3.7885 0.0 183.2 0.0 -4,-7 0.3354 1 14.0 ALTERNATIVE:2 ENSMUSG00000022504 Ciita ENSMUST00000230392 ENSMUSP00000155635 TRANSLATION protein_coding - - - 78.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - 0.0 MINOR ENSMUSG00000022504 Ciita ENSMUST00000229906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022504 Ciita ENSMUST00000230892 ENSMUSP00000155232 TRANSLATION protein_coding stop - - 104.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022504 Ciita ENSMUST00000230533 - NO_TRANSLATION retained_intron ENSMUSG00000022504 Ciita ENSMUST00000230450 ENSMUSP00000155002 TRANSLATION protein_coding - - - 1054.0 8.0 3.7885 1.1 183.2 0.0 -4,-5 0.4093 1 14.091 ALTERNATIVE:2 ENSMUSG00000060166 Zdhhc8 ENSMUST00000076957 ENSMUSP00000076224 TRANSLATION protein_coding - CCDS28017.1 1 762.0 0.0 4.106 6.5 119.6 0.0 -2,-3 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000060166 Zdhhc8 ENSMUST00000231412 ENSMUSP00000156093 TRANSLATION protein_coding start/stop - - 218.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000022525 Plaat1 ENSMUST00000161294 ENSMUSP00000124252 TRANSLATION nonsense_mediated_decay - - 3 50.0 0.0 1.0 0.0 41.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022525 Plaat1 ENSMUST00000162747 ENSMUSP00000123809 TRANSLATION protein_coding - CCDS28094.1 1 167.0 0.0 1.8 21.4 126.6 1.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000022525 Plaat1 ENSMUST00000160794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022525 Plaat1 ENSMUST00000089824 ENSMUSP00000087257 TRANSLATION protein_coding - CCDS28094.1 1 167.0 0.0 1.8 21.4 126.6 1.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000062713 Sim2 ENSMUST00000231688 ENSMUSP00000156302 TRANSLATION nonsense_mediated_decay - - - 406.0 0.0 4.89 0.0 170.7 0.0 -4,-5 0.0309 - -2.0 MINOR ENSMUSG00000062713 Sim2 ENSMUST00000231295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062713 Sim2 ENSMUST00000072182 ENSMUSP00000072043 TRANSLATION protein_coding - CCDS37406.1 1 657.0 0.0 4.89 0.1 422.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075229 Mix23 ENSMUST00000099937 ENSMUSP00000097520 TRANSLATION protein_coding - CCDS49839.1 3 134.0 0.0 2.55 1.7 0.0 0.0 -4,-5 0.2093 5 5.876 MINOR ENSMUSG00000075229 Mix23 ENSMUST00000231773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075229 Mix23 ENSMUST00000231239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075229 Mix23 ENSMUST00000164916 ENSMUSP00000125874 TRANSLATION protein_coding - CCDS28147.1 1 144.0 0.0 2.65 27.9 0.0 0.0 -4,-5 1.0 5 10.0 PRINCIPAL:1 ENSMUSG00000075229 Mix23 ENSMUST00000231468 ENSMUSP00000156039 TRANSLATION protein_coding - - - 53.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0035 1 2.832 MINOR ENSMUSG00000075229 Mix23 ENSMUST00000163352 ENSMUSP00000131929 TRANSLATION protein_coding - CCDS49838.1 3 102.0 0.0 1.85 2.9 0.0 0.0 -4,-5 0.1469 4 4.472 MINOR ENSMUSG00000075229 Mix23 ENSMUST00000231523 - NO_TRANSLATION retained_intron ENSMUSG00000013539 Tango2 ENSMUST00000232192 - NO_TRANSLATION retained_intron ENSMUSG00000013539 Tango2 ENSMUST00000231255 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013539 Tango2 ENSMUST00000130752 ENSMUSP00000121300 TRANSLATION protein_coding stop - 2 117.0 0.0 3.33 0.0 137.3 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000013539 Tango2 ENSMUST00000231543 ENSMUSP00000156081 TRANSLATION protein_coding stop - - 161.0 0.0 4.99 0.0 77.9 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000013539 Tango2 ENSMUST00000115628 ENSMUSP00000111291 TRANSLATION protein_coding - CCDS28019.1 1 276.0 0.0 8.16 0.0 251.6 0.0 -4,-7 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000013539 Tango2 ENSMUST00000232588 ENSMUSP00000156240 TRANSLATION protein_coding stop - - 189.0 0.0 5.49 0.0 198.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000013539 Tango2 ENSMUST00000231605 ENSMUSP00000155896 TRANSLATION protein_coding - - - 177.0 0.0 5.33 0.0 111.0 0.0 -4,-5 0.0 5 0.342 MINOR ENSMUSG00000013539 Tango2 ENSMUST00000145203 - NO_TRANSLATION retained_intron ENSMUSG00000013539 Tango2 ENSMUST00000231372 ENSMUSP00000156177 TRANSLATION protein_coding stop - - 126.0 0.0 3.66 0.0 114.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000013539 Tango2 ENSMUST00000134385 - NO_TRANSLATION retained_intron ENSMUSG00000013539 Tango2 ENSMUST00000232558 - NO_TRANSLATION retained_intron ENSMUSG00000013539 Tango2 ENSMUST00000128580 ENSMUSP00000121582 TRANSLATION nonsense_mediated_decay - - 5 151.0 0.0 4.41 0.8 159.1 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000013539 Tango2 ENSMUST00000152684 - NO_TRANSLATION retained_intron ENSMUSG00000013539 Tango2 ENSMUST00000231308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013539 Tango2 ENSMUST00000232073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013539 Tango2 ENSMUST00000125287 ENSMUSP00000118806 TRANSLATION protein_coding stop - 5 120.0 0.0 3.33 0.0 145.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000013539 Tango2 ENSMUST00000142677 - NO_TRANSLATION retained_intron ENSMUSG00000013539 Tango2 ENSMUST00000145758 - NO_TRANSLATION retained_intron ENSMUSG00000013539 Tango2 ENSMUST00000150152 - NO_TRANSLATION retained_intron ENSMUSG00000035107 Dcbld2 ENSMUST00000142830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035107 Dcbld2 ENSMUST00000150817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035107 Dcbld2 ENSMUST00000149321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035107 Dcbld2 ENSMUST00000134324 - NO_TRANSLATION retained_intron ENSMUSG00000035107 Dcbld2 ENSMUST00000130409 - NO_TRANSLATION retained_intron ENSMUSG00000035107 Dcbld2 ENSMUST00000135415 - NO_TRANSLATION retained_intron ENSMUSG00000035107 Dcbld2 ENSMUST00000046663 ENSMUSP00000039915 TRANSLATION protein_coding - CCDS28229.1 1 769.0 0.0 6.206 2.2 236.5 0.0 0,4 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000033149 Phldb2 ENSMUST00000036355 ENSMUSP00000046496 TRANSLATION protein_coding - CCDS28202.1 1 1249.0 11.0 1.1 6.8 53.7 0.0 -4,-5 1.0 27 20.0 PRINCIPAL:1 ENSMUSG00000033149 Phldb2 ENSMUST00000133111 - NO_TRANSLATION retained_intron ENSMUSG00000033149 Phldb2 ENSMUST00000142697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033149 Phldb2 ENSMUST00000076333 ENSMUSP00000075672 TRANSLATION protein_coding - CCDS57031.1 1 1302.0 11.0 1.1 0.0 53.7 0.0 -4,-5 0.3993 27 18.0 MINOR ENSMUSG00000033149 Phldb2 ENSMUST00000136317 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033149 Phldb2 ENSMUST00000131003 ENSMUSP00000119718 TRANSLATION protein_coding start - 1 565.0 11.0 1.1 0.0 53.7 0.0 -4,-5 0.0568 9 -2.0 MINOR ENSMUSG00000033149 Phldb2 ENSMUST00000151300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033149 Phldb2 ENSMUST00000125433 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033149 Phldb2 ENSMUST00000134802 ENSMUSP00000123284 TRANSLATION protein_coding stop - 1 1131.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0163 25 -2.0 MINOR ENSMUSG00000033149 Phldb2 ENSMUST00000128365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033149 Phldb2 ENSMUST00000136405 ENSMUSP00000121800 TRANSLATION protein_coding stop - 3 133.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000059113 Gm10061 ENSMUST00000073111 ENSMUSP00000072854 TRANSLATION protein_coding - - - 54.0 0.0 0.0 0.0 33.0 0.0 -4,-5 0.6987 - 6.0 PRINCIPAL:1 ENSMUSG00000005262 Ufd1 ENSMUST00000166352 - NO_TRANSLATION retained_intron ENSMUSG00000005262 Ufd1 ENSMUST00000171789 ENSMUSP00000131977 TRANSLATION nonsense_mediated_decay - - 3 48.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000005262 Ufd1 ENSMUST00000172013 ENSMUSP00000128186 TRANSLATION nonsense_mediated_decay - - 5 58.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000005262 Ufd1 ENSMUST00000164795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005262 Ufd1 ENSMUST00000170325 - NO_TRANSLATION retained_intron ENSMUSG00000005262 Ufd1 ENSMUST00000232311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005262 Ufd1 ENSMUST00000163695 ENSMUSP00000132341 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 1.66 0.0 37.7 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000005262 Ufd1 ENSMUST00000005394 ENSMUSP00000005394 TRANSLATION protein_coding - CCDS28028.1 1 307.0 0.0 6.24 34.9 266.7 0.0 -4,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000005262 Ufd1 ENSMUST00000172451 ENSMUSP00000133217 TRANSLATION protein_coding start - 2 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005262 Ufd1 ENSMUST00000168822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005262 Ufd1 ENSMUST00000115578 ENSMUSP00000111241 TRANSLATION protein_coding - CCDS28028.1 5 307.0 0.0 6.24 34.9 266.7 0.0 -4,-2 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000076937 Iglc2 ENSMUST00000198182 ENSMUSP00000143153 TRANSLATION IG_C_gene start - - 105.0 0.0 1.0 0.0 95.0 0.0 -4,-6 0.215 1 -2.0 PRINCIPAL:5 ENSMUSG00000076937 Iglc2 ENSMUST00000103749 ENSMUSP00000100464 TRANSLATION IG_C_gene start - 1 104.0 0.0 1.0 0.0 95.0 0.0 -4,-5 0.778 1 -2.0 ALTERNATIVE:2 ENSMUSG00000022749 Tbc1d23 ENSMUST00000226678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022749 Tbc1d23 ENSMUST00000227359 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022749 Tbc1d23 ENSMUST00000231435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022749 Tbc1d23 ENSMUST00000023431 ENSMUSP00000023431 TRANSLATION protein_coding - CCDS28228.1 1 684.0 0.0 14.83 15.9 99.3 0.0 -4,-5 1.0 7 12.0 ALTERNATIVE:1 ENSMUSG00000022749 Tbc1d23 ENSMUST00000226586 ENSMUSP00000154535 TRANSLATION protein_coding - - - 699.0 0.0 14.83 15.9 99.3 0.0 -4,-5 0.8364 8 12.0 PRINCIPAL:3 ENSMUSG00000022749 Tbc1d23 ENSMUST00000227531 - NO_TRANSLATION retained_intron ENSMUSG00000022749 Tbc1d23 ENSMUST00000226486 - NO_TRANSLATION retained_intron ENSMUSG00000022749 Tbc1d23 ENSMUST00000227681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022749 Tbc1d23 ENSMUST00000231391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022749 Tbc1d23 ENSMUST00000228172 ENSMUSP00000153899 TRANSLATION nonsense_mediated_decay - - - 97.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022833 Ccdc14 ENSMUST00000231609 ENSMUSP00000156124 TRANSLATION protein_coding - - - 886.0 0.0 0.0 0.0 1297.0 0.0 -4,-2 0.2475 - 2.0 ALTERNATIVE:2 ENSMUSG00000022833 Ccdc14 ENSMUST00000232341 - NO_TRANSLATION retained_intron ENSMUSG00000022833 Ccdc14 ENSMUST00000023532 ENSMUSP00000023532 TRANSLATION protein_coding - CCDS49837.1 1 934.0 0.0 0.0 0.0 1297.0 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000022833 Ccdc14 ENSMUST00000231364 - NO_TRANSLATION retained_intron ENSMUSG00000022833 Ccdc14 ENSMUST00000232489 - NO_TRANSLATION retained_intron ENSMUSG00000022803 Popdc2 ENSMUST00000114739 ENSMUSP00000110387 TRANSLATION protein_coding - CCDS37342.1 1 367.0 0.0 2.8 8.6 163.6 2.0 -4,-6 0.9485 2 8.961 ALTERNATIVE:1 ENSMUSG00000022803 Popdc2 ENSMUST00000141189 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022803 Popdc2 ENSMUST00000023494 ENSMUSP00000023494 TRANSLATION protein_coding - CCDS37343.1 1 371.0 0.0 2.8 8.7 163.6 2.0 -4,-6 1.0 2 9.0 PRINCIPAL:4 ENSMUSG00000022803 Popdc2 ENSMUST00000146342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022803 Popdc2 ENSMUST00000127892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005980 Dnase1 ENSMUST00000177337 ENSMUSP00000135442 TRANSLATION nonsense_mediated_decay - - 5 203.0 6.0 4.33 0.0 0.0 0.0 0,-3 0.0035 5 -2.0 MINOR ENSMUSG00000005980 Dnase1 ENSMUST00000125961 - NO_TRANSLATION retained_intron ENSMUSG00000005980 Dnase1 ENSMUST00000120009 ENSMUSP00000113119 TRANSLATION protein_coding - CCDS27913.1 1 284.0 8.0 8.24 5.9 31.6 0.0 0,-3 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000005980 Dnase1 ENSMUST00000144792 - NO_TRANSLATION retained_intron ENSMUSG00000005980 Dnase1 ENSMUST00000132466 - NO_TRANSLATION retained_intron ENSMUSG00000005980 Dnase1 ENSMUST00000137748 ENSMUSP00000119934 TRANSLATION protein_coding stop - 2 225.0 6.0 6.41 0.0 26.7 0.0 0,-3 0.0041 5 -2.0 MINOR ENSMUSG00000005980 Dnase1 ENSMUST00000176642 - NO_TRANSLATION retained_intron ENSMUSG00000005980 Dnase1 ENSMUST00000149670 - NO_TRANSLATION retained_intron ENSMUSG00000005980 Dnase1 ENSMUST00000175755 ENSMUSP00000135060 TRANSLATION protein_coding start - 2 63.0 0.0 1.66 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000005980 Dnase1 ENSMUST00000157044 ENSMUSP00000120642 TRANSLATION protein_coding stop - 2 71.0 0.0 1.75 0.0 0.0 0.0 0,-3 0.0025 3 -2.0 MINOR ENSMUSG00000005980 Dnase1 ENSMUST00000006136 ENSMUSP00000006136 TRANSLATION protein_coding - CCDS27913.1 1 284.0 8.0 8.24 5.9 31.6 0.0 0,-3 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000095620 Csta2 ENSMUST00000063539 ENSMUSP00000067712 TRANSLATION protein_coding - CCDS37330.1 1 97.0 0.0 2.75 17.0 80.3 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095620 Csta2 ENSMUST00000187183 ENSMUSP00000140745 TRANSLATION protein_coding - CCDS37330.1 1 97.0 0.0 2.75 17.0 80.3 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095620 Csta2 ENSMUST00000187742 ENSMUSP00000139876 TRANSLATION protein_coding - CCDS37330.1 1 97.0 0.0 2.75 17.0 80.3 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000022948 Setd4 ENSMUST00000233324 ENSMUSP00000156951 TRANSLATION nonsense_mediated_decay start - - 74.0 7.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022948 Setd4 ENSMUST00000140619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022948 Setd4 ENSMUST00000233453 - NO_TRANSLATION retained_intron ENSMUSG00000022948 Setd4 ENSMUST00000023669 ENSMUSP00000023669 TRANSLATION protein_coding - CCDS28340.1 5 439.0 15.0 9.429 3.9 92.0 0.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000022948 Setd4 ENSMUST00000233419 - NO_TRANSLATION retained_intron ENSMUSG00000022948 Setd4 ENSMUST00000232835 ENSMUSP00000156855 TRANSLATION protein_coding start - - 48.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022948 Setd4 ENSMUST00000233931 ENSMUSP00000156723 TRANSLATION protein_coding - CCDS28340.1 - 439.0 15.0 9.429 3.9 92.0 0.0 -4,-7 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000022948 Setd4 ENSMUST00000233912 - NO_TRANSLATION retained_intron ENSMUSG00000022948 Setd4 ENSMUST00000152520 - NO_TRANSLATION retained_intron ENSMUSG00000022948 Setd4 ENSMUST00000141789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022948 Setd4 ENSMUST00000233981 - NO_TRANSLATION retained_intron ENSMUSG00000022948 Setd4 ENSMUST00000233517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022948 Setd4 ENSMUST00000123756 - NO_TRANSLATION retained_intron ENSMUSG00000022948 Setd4 ENSMUST00000156298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022948 Setd4 ENSMUST00000233969 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022948 Setd4 ENSMUST00000154355 ENSMUSP00000156553 TRANSLATION protein_coding stop - 2 241.0 11.0 4.679 0.0 29.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022948 Setd4 ENSMUST00000232870 ENSMUSP00000156698 TRANSLATION protein_coding start - - 406.0 15.0 8.6 0.0 83.0 0.0 -4,-5 0.0127 - -2.0 MINOR ENSMUSG00000022838 Eaf2 ENSMUST00000114829 ENSMUSP00000110477 TRANSLATION protein_coding - CCDS49843.1 1 262.0 0.0 3.2 13.6 75.5 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000022838 Eaf2 ENSMUST00000231782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022838 Eaf2 ENSMUST00000147053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022838 Eaf2 ENSMUST00000075946 ENSMUSP00000075331 TRANSLATION protein_coding - CCDS37335.1 1 132.0 0.0 0.0 2.9 0.0 0.0 -4,-6 0.0731 - 0.604 MINOR ENSMUSG00000022838 Eaf2 ENSMUST00000134556 - NO_TRANSLATION retained_intron ENSMUSG00000022838 Eaf2 ENSMUST00000157072 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022838 Eaf2 ENSMUST00000138660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022838 Eaf2 ENSMUST00000114825 ENSMUSP00000110473 TRANSLATION protein_coding - CCDS37335.1 1 132.0 0.0 0.0 2.9 0.0 0.0 -4,-6 0.0731 - 0.604 MINOR ENSMUSG00000022838 Eaf2 ENSMUST00000023537 ENSMUSP00000023537 TRANSLATION protein_coding - - 5 195.0 0.0 3.2 0.0 75.5 0.0 -4,-7 0.0098 - 12.0 MINOR ENSMUSG00000039637 Coro7 ENSMUST00000143723 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039637 Coro7 ENSMUST00000151156 - NO_TRANSLATION retained_intron ENSMUSG00000039637 Coro7 ENSMUST00000127850 - NO_TRANSLATION retained_intron ENSMUSG00000039637 Coro7 ENSMUST00000135823 ENSMUSP00000118310 TRANSLATION nonsense_mediated_decay - - 1 298.0 0.0 4.66 0.0 91.1 0.0 -4,-1 0.0014 4 -2.0 MINOR ENSMUSG00000039637 Coro7 ENSMUST00000127125 - NO_TRANSLATION retained_intron ENSMUSG00000039637 Coro7 ENSMUST00000150724 - NO_TRANSLATION retained_intron ENSMUSG00000039637 Coro7 ENSMUST00000123031 - NO_TRANSLATION retained_intron ENSMUSG00000039637 Coro7 ENSMUST00000090480 ENSMUSP00000087966 TRANSLATION protein_coding - - 1 288.0 0.0 4.56 0.0 91.1 0.0 -4,-1 0.0004 4 0.0 MINOR ENSMUSG00000039637 Coro7 ENSMUST00000139072 - NO_TRANSLATION retained_intron ENSMUSG00000039637 Coro7 ENSMUST00000038552 ENSMUSP00000048489 TRANSLATION protein_coding - CCDS37242.1 1 922.0 0.0 15.51 12.4 301.1 0.0 -4,-1 1.0 23 15.0 PRINCIPAL:1 ENSMUSG00000039637 Coro7 ENSMUST00000130125 - NO_TRANSLATION retained_intron ENSMUSG00000039637 Coro7 ENSMUST00000150028 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047714 Ppp1r2 ENSMUST00000115233 ENSMUSP00000110888 TRANSLATION protein_coding - - 1 195.0 0.0 1.4 0.0 146.0 0.0 -4,-2 0.1161 6 12.0 MINOR ENSMUSG00000047714 Ppp1r2 ENSMUST00000060188 ENSMUSP00000060118 TRANSLATION protein_coding - CCDS28104.1 1 206.0 0.0 1.4 10.3 146.0 0.0 -4,-2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000090223 Pcp4 ENSMUST00000232906 ENSMUSP00000156426 TRANSLATION nonsense_mediated_decay start - - 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0106 - -2.0 MINOR ENSMUSG00000090223 Pcp4 ENSMUST00000061739 ENSMUSP00000062539 TRANSLATION protein_coding - CCDS37414.1 1 62.0 0.0 1.0 17.4 0.0 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000090223 Pcp4 ENSMUST00000233816 ENSMUSP00000156398 TRANSLATION protein_coding start - - 125.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0624 - -2.0 MINOR ENSMUSG00000090223 Pcp4 ENSMUST00000233216 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000105066 Iglj4 ENSMUST00000198313 ENSMUSP00000142762 TRANSLATION IG_J_gene start/stop - - 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000057650 Krtap19-2 ENSMUST00000076186 ENSMUSP00000075543 TRANSLATION protein_coding - CCDS28304.1 - 141.0 0.0 0.0 0.0 39.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000003528 Slc25a1 ENSMUST00000131507 ENSMUSP00000123613 TRANSLATION protein_coding start - 3 197.0 0.0 5.0 0.0 109.3 0.0 -4,-1 0.0 5 -2.0 MINOR ENSMUSG00000003528 Slc25a1 ENSMUST00000003622 ENSMUSP00000003622 TRANSLATION protein_coding - CCDS28014.1 1 311.0 0.0 8.0 6.5 203.5 0.0 -3,-1 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000003528 Slc25a1 ENSMUST00000142022 - NO_TRANSLATION retained_intron ENSMUSG00000003528 Slc25a1 ENSMUST00000150925 - NO_TRANSLATION retained_intron ENSMUSG00000003528 Slc25a1 ENSMUST00000147384 - NO_TRANSLATION retained_intron ENSMUSG00000003528 Slc25a1 ENSMUST00000129270 - NO_TRANSLATION retained_intron ENSMUSG00000118669 Arvcf ENSMUST00000239538 ENSMUSP00000159429 TRANSLATION protein_coding - - - 892.0 0.0 5.528 5.9 114.6 0.0 -4,-5 1.0 17 10.0 PRINCIPAL:4 ENSMUSG00000118669 Arvcf ENSMUST00000239534 ENSMUSP00000159426 TRANSLATION protein_coding - - - 962.0 0.0 5.198 5.9 114.6 0.0 -4,-5 0.8743 17 9.34 ALTERNATIVE:1 ENSMUSG00000118669 Arvcf ENSMUST00000239549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118669 Arvcf ENSMUST00000239547 ENSMUSP00000159437 TRANSLATION protein_coding - - - 892.0 0.0 5.528 5.9 114.6 0.0 -4,-5 1.0 17 10.0 PRINCIPAL:4 ENSMUSG00000118669 Arvcf ENSMUST00000239537 - NO_TRANSLATION retained_intron ENSMUSG00000118669 Arvcf ENSMUST00000239536 ENSMUSP00000159428 TRANSLATION protein_coding - - - 956.0 0.0 5.528 0.0 114.6 0.0 -4,-5 0.098 17 8.0 MINOR ENSMUSG00000118669 Arvcf ENSMUST00000239551 ENSMUSP00000159439 TRANSLATION protein_coding start - - 131.0 0.0 1.198 0.0 0.0 0.0 -2,0 0.0005 - -2.0 MINOR ENSMUSG00000118669 Arvcf ENSMUST00000239535 ENSMUSP00000159427 TRANSLATION protein_coding - - - 962.0 0.0 5.198 5.9 114.6 0.0 -4,-5 0.8743 17 9.34 ALTERNATIVE:1 ENSMUSG00000118669 Arvcf ENSMUST00000239550 - NO_TRANSLATION retained_intron ENSMUSG00000118669 Arvcf ENSMUST00000239533 ENSMUSP00000159425 TRANSLATION protein_coding - - - 956.0 0.0 5.528 0.0 114.6 0.0 -4,-5 0.098 17 8.0 MINOR ENSMUSG00000118669 Arvcf ENSMUST00000239540 - NO_TRANSLATION retained_intron ENSMUSG00000118669 Arvcf ENSMUST00000239548 ENSMUSP00000159438 TRANSLATION protein_coding - - - 898.0 0.0 5.198 5.9 114.6 0.0 -4,-5 0.929 17 9.34 ALTERNATIVE:1 ENSMUSG00000003235 Eif2b5 ENSMUST00000003320 ENSMUSP00000003320 TRANSLATION protein_coding - CCDS28047.1 1 717.0 0.0 12.808 1.8 91.0 0.0 -4,-7 1.0 13 13.0 PRINCIPAL:1 ENSMUSG00000003235 Eif2b5 ENSMUST00000231315 ENSMUSP00000155949 TRANSLATION protein_coding start - - 303.0 0.0 5.906 0.0 69.4 0.0 -4,-6 0.004 6 -2.0 MINOR ENSMUSG00000003235 Eif2b5 ENSMUST00000148714 ENSMUSP00000121169 TRANSLATION protein_coding start - 5 160.0 0.0 3.55 0.0 45.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000060663 Or5k8 ENSMUST00000079955 ENSMUSP00000078873 TRANSLATION protein_coding - CCDS28237.1 2 308.0 0.0 1.0 11.5 175.5 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060663 Or5k8 ENSMUST00000215069 ENSMUSP00000150202 TRANSLATION protein_coding - CCDS28237.1 5 308.0 0.0 1.0 11.5 175.5 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000005983 1700037C18Rik ENSMUST00000123235 ENSMUSP00000135233 TRANSLATION protein_coding stop - 3 67.0 0.0 0.0 0.0 122.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005983 1700037C18Rik ENSMUST00000177221 ENSMUSP00000134800 TRANSLATION protein_coding start/stop - 5 144.0 0.0 0.0 0.0 249.0 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000005983 1700037C18Rik ENSMUST00000115859 ENSMUSP00000111525 TRANSLATION protein_coding - CCDS49746.1 1 171.0 2.0 0.0 0.1 300.4 0.0 -4,-5 0.4146 - 4.0 ALTERNATIVE:2 ENSMUSG00000005983 1700037C18Rik ENSMUST00000177323 ENSMUSP00000135766 TRANSLATION protein_coding - - 5 175.0 2.0 0.0 1.1 299.8 0.0 -4,-6 0.6451 - 5.0 PRINCIPAL:4 ENSMUSG00000005983 1700037C18Rik ENSMUST00000006139 ENSMUSP00000006139 TRANSLATION nonsense_mediated_decay - - 2 143.0 0.0 0.0 0.1 228.7 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000005983 1700037C18Rik ENSMUST00000177519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062608 Or5k3 ENSMUST00000075381 ENSMUSP00000073737 TRANSLATION protein_coding - CCDS28247.1 - 308.0 0.0 1.0 10.4 179.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062608 Or5k3 ENSMUST00000216957 ENSMUSP00000150249 TRANSLATION protein_coding - CCDS28247.1 2 308.0 0.0 1.0 10.4 179.0 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022667 Cd200r1 ENSMUST00000231633 ENSMUSP00000155927 TRANSLATION nonsense_mediated_decay - - - 40.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000022667 Cd200r1 ENSMUST00000057488 ENSMUSP00000053822 TRANSLATION protein_coding - CCDS28189.1 1 326.0 0.0 2.3 0.4 76.8 0.0 2,-3 1.0 1 11.85 PRINCIPAL:1 ENSMUSG00000022667 Cd200r1 ENSMUST00000134625 ENSMUSP00000138076 TRANSLATION nonsense_mediated_decay - - 1 245.0 0.0 2.36 0.0 76.8 0.0 2,-3 0.1175 1 -2.0 MINOR ENSMUSG00000107252 Litafd ENSMUST00000201722 ENSMUSP00000143858 TRANSLATION protein_coding - - 1 78.0 4.0 2.0 0.0 77.2 0.0 -4,-7 0.7398 - 16.0 PRINCIPAL:1 ENSMUSG00000107252 Litafd ENSMUST00000202157 ENSMUSP00000148509 TRANSLATION protein_coding - - 3 74.0 2.0 1.0 0.0 37.6 0.0 -4,-7 0.0055 - 7.922 MINOR ENSMUSG00000022708 Zbtb20 ENSMUST00000114690 ENSMUSP00000110338 TRANSLATION protein_coding - CCDS49851.1 1 668.0 20.0 2.7 4.2 191.4 0.0 -4,-5 0.6237 12 19.353 MINOR ENSMUSG00000022708 Zbtb20 ENSMUST00000131689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022708 Zbtb20 ENSMUST00000114691 ENSMUSP00000110339 TRANSLATION protein_coding - CCDS49851.1 1 668.0 20.0 2.7 4.2 191.4 0.0 -4,-5 0.6237 12 19.353 MINOR ENSMUSG00000022708 Zbtb20 ENSMUST00000123047 ENSMUSP00000124798 TRANSLATION protein_coding stop - 3 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.023 - -2.0 MINOR ENSMUSG00000022708 Zbtb20 ENSMUST00000151290 - NO_TRANSLATION retained_intron ENSMUSG00000022708 Zbtb20 ENSMUST00000141941 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022708 Zbtb20 ENSMUST00000148775 ENSMUSP00000125016 TRANSLATION protein_coding stop - 3 60.0 0.0 0.8 0.0 43.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022708 Zbtb20 ENSMUST00000114695 ENSMUSP00000110343 TRANSLATION protein_coding - CCDS28178.1 1 741.0 20.0 2.7 8.1 191.4 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000022708 Zbtb20 ENSMUST00000151244 ENSMUSP00000124984 TRANSLATION protein_coding stop - 3 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022708 Zbtb20 ENSMUST00000146708 ENSMUSP00000125233 TRANSLATION protein_coding stop - 3 75.0 0.0 1.3 0.0 44.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022708 Zbtb20 ENSMUST00000139491 - NO_TRANSLATION retained_intron ENSMUSG00000022708 Zbtb20 ENSMUST00000132881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022708 Zbtb20 ENSMUST00000114694 ENSMUSP00000110342 TRANSLATION protein_coding - CCDS28178.1 5 741.0 20.0 2.7 8.1 191.4 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000022708 Zbtb20 ENSMUST00000162745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022708 Zbtb20 ENSMUST00000156981 ENSMUSP00000124189 TRANSLATION protein_coding stop - 3 138.0 0.0 2.1 0.0 87.8 0.0 -4,-5 0.0028 3 -2.0 MINOR ENSMUSG00000022708 Zbtb20 ENSMUST00000126354 - NO_TRANSLATION retained_intron ENSMUSG00000022708 Zbtb20 ENSMUST00000126100 ENSMUSP00000125241 TRANSLATION protein_coding stop - 5 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.023 - -2.0 MINOR ENSMUSG00000022708 Zbtb20 ENSMUST00000079441 ENSMUSP00000078410 TRANSLATION protein_coding - CCDS28178.1 5 741.0 20.0 2.7 8.1 191.4 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000022708 Zbtb20 ENSMUST00000156367 ENSMUSP00000124126 TRANSLATION protein_coding stop - 3 131.0 0.0 0.8 0.0 40.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022708 Zbtb20 ENSMUST00000122875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022708 Zbtb20 ENSMUST00000134537 - NO_TRANSLATION retained_intron ENSMUSG00000038094 Atp13a4 ENSMUST00000182676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038094 Atp13a4 ENSMUST00000039090 ENSMUSP00000048753 TRANSLATION protein_coding - CCDS49817.1 1 878.0 2.0 7.368 0.0 283.5 7.0 -4,-6 0.1392 9 8.109 MINOR ENSMUSG00000038094 Atp13a4 ENSMUST00000057018 ENSMUSP00000060987 TRANSLATION protein_coding - CCDS59623.1 1 1174.0 3.0 10.065 0.0 242.3 11.0 -4,-6 0.2 10 12.03 MINOR ENSMUSG00000038094 Atp13a4 ENSMUST00000182573 ENSMUSP00000138700 TRANSLATION nonsense_mediated_decay start - 5 576.0 3.0 7.578 0.0 78.2 3.0 -4,-7 0.0005 7 -2.0 MINOR ENSMUSG00000038094 Atp13a4 ENSMUST00000182694 - NO_TRANSLATION retained_intron ENSMUSG00000038094 Atp13a4 ENSMUST00000182168 ENSMUSP00000138515 TRANSLATION nonsense_mediated_decay start - 5 87.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000038094 Atp13a4 ENSMUST00000182094 - NO_TRANSLATION retained_intron ENSMUSG00000038094 Atp13a4 ENSMUST00000182824 - NO_TRANSLATION retained_intron ENSMUSG00000038094 Atp13a4 ENSMUST00000182013 ENSMUSP00000138583 TRANSLATION nonsense_mediated_decay - - 1 84.0 0.0 0.0 0.0 90.7 2.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000038094 Atp13a4 ENSMUST00000182357 - NO_TRANSLATION retained_intron ENSMUSG00000038094 Atp13a4 ENSMUST00000182627 ENSMUSP00000138479 TRANSLATION protein_coding - CCDS49816.1 5 1193.0 3.0 10.315 8.9 283.5 13.0 -4,-6 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000082815 Gm5678 ENSMUST00000120115 ENSMUSP00000147517 TRANSLATION protein_coding - - 5 277.0 28.0 3.0 15.5 89.0 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000022706 Mrpl40 ENSMUST00000119273 ENSMUSP00000113065 TRANSLATION protein_coding - - 3 162.0 0.0 2.0 3.8 210.7 0.0 -4,-5 0.516 7 12.812 MINOR ENSMUSG00000022706 Mrpl40 ENSMUST00000023391 ENSMUSP00000023391 TRANSLATION protein_coding - CCDS28030.1 1 206.0 0.0 2.0 7.9 210.7 0.0 -4,0 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000022706 Mrpl40 ENSMUST00000232123 - NO_TRANSLATION retained_intron ENSMUSG00000035578 Iqcg ENSMUST00000040309 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035578 Iqcg ENSMUST00000231235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035578 Iqcg ENSMUST00000115100 ENSMUSP00000110752 TRANSLATION protein_coding - CCDS37316.1 1 419.0 0.0 4.3 0.1 20.9 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000035578 Iqcg ENSMUST00000126793 - NO_TRANSLATION retained_intron ENSMUSG00000035578 Iqcg ENSMUST00000133219 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035258 Abi3bp ENSMUST00000231870 ENSMUSP00000156180 TRANSLATION protein_coding - - - 1099.0 0.0 1.812 0.0 40.4 0.0 3,-1 0.3086 14 8.0 ALTERNATIVE:2 ENSMUSG00000035258 Abi3bp ENSMUST00000096012 ENSMUSP00000093711 TRANSLATION protein_coding - CCDS37361.1 1 1079.0 0.0 1.812 0.0 40.4 0.0 3,-1 0.5834 14 8.0 ALTERNATIVE:2 ENSMUSG00000035258 Abi3bp ENSMUST00000096013 ENSMUSP00000093712 TRANSLATION protein_coding - CCDS37360.1 1 1115.0 0.0 1.812 0.0 40.4 0.0 3,-1 0.6087 14 8.0 ALTERNATIVE:2 ENSMUSG00000035258 Abi3bp ENSMUST00000231337 - NO_TRANSLATION retained_intron ENSMUSG00000035258 Abi3bp ENSMUST00000231832 ENSMUSP00000156155 TRANSLATION protein_coding - - - 884.0 0.0 1.812 0.0 40.4 0.0 3,-1 0.2106 13 8.0 ALTERNATIVE:2 ENSMUSG00000035258 Abi3bp ENSMUST00000231781 ENSMUSP00000156096 TRANSLATION protein_coding - - - 1637.0 0.0 1.812 0.0 40.4 0.0 3,-1 0.3631 14 8.0 ALTERNATIVE:2 ENSMUSG00000035258 Abi3bp ENSMUST00000171000 ENSMUSP00000128818 TRANSLATION protein_coding - CCDS37362.1 1 909.0 0.0 1.812 0.0 40.4 0.0 3,-1 0.4928 12 8.0 ALTERNATIVE:2 ENSMUSG00000035258 Abi3bp ENSMUST00000048471 ENSMUSP00000036257 TRANSLATION protein_coding - CCDS37359.1 1 1179.0 0.0 1.812 0.0 40.4 0.0 3,-1 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000022516 Nudt16l1 ENSMUST00000230224 - NO_TRANSLATION retained_intron ENSMUSG00000022516 Nudt16l1 ENSMUST00000230201 - NO_TRANSLATION retained_intron ENSMUSG00000022516 Nudt16l1 ENSMUST00000230931 ENSMUSP00000155142 TRANSLATION protein_coding - CCDS27927.1 - 211.0 10.0 4.0 0.0 0.0 0.0 -4,-5 0.9219 9 12.0 PRINCIPAL:1 ENSMUSG00000022516 Nudt16l1 ENSMUST00000229961 ENSMUSP00000154873 TRANSLATION protein_coding - - - 199.0 10.0 3.0 0.0 0.0 0.0 -4,-5 0.0198 7 10.002 MINOR ENSMUSG00000022516 Nudt16l1 ENSMUST00000050881 ENSMUSP00000054201 TRANSLATION protein_coding - - 1 151.0 9.0 2.0 0.0 0.0 0.0 -4,-5 0.0094 5 7.332 MINOR ENSMUSG00000022829 Stxbp5l ENSMUST00000114787 ENSMUSP00000110435 TRANSLATION protein_coding - CCDS28159.2 5 1185.0 0.0 7.303 17.4 124.9 0.0 -4,-7 1.0 24 12.0 PRINCIPAL:3 ENSMUSG00000022829 Stxbp5l ENSMUST00000114780 ENSMUSP00000110428 TRANSLATION protein_coding - CCDS49846.1 5 1104.0 0.0 7.303 0.0 124.9 0.0 -4,-7 0.3759 20 8.0 MINOR ENSMUSG00000022829 Stxbp5l ENSMUST00000151910 - NO_TRANSLATION retained_intron ENSMUSG00000022829 Stxbp5l ENSMUST00000114775 ENSMUSP00000110423 TRANSLATION protein_coding - - 1 466.0 0.0 5.805 0.0 124.9 0.0 -4,-7 0.0095 6 5.006 MINOR ENSMUSG00000022829 Stxbp5l ENSMUST00000123629 - NO_TRANSLATION retained_intron ENSMUSG00000022829 Stxbp5l ENSMUST00000149984 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022829 Stxbp5l ENSMUST00000149790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022829 Stxbp5l ENSMUST00000023526 - NO_TRANSLATION retained_intron ENSMUSG00000022829 Stxbp5l ENSMUST00000114782 ENSMUSP00000110430 TRANSLATION protein_coding - CCDS49847.1 5 1161.0 0.0 7.303 14.2 124.9 0.0 -4,-7 0.9673 22 11.22 ALTERNATIVE:1 ENSMUSG00000022829 Stxbp5l ENSMUST00000114781 ENSMUSP00000110429 TRANSLATION protein_coding - CCDS49848.1 5 1128.0 0.0 7.303 5.0 124.9 0.0 -4,-7 0.5327 22 8.976 MINOR ENSMUSG00000022686 B3gnt5 ENSMUST00000164397 ENSMUSP00000126157 TRANSLATION protein_coding - CCDS28040.1 5 376.0 0.0 1.0 14.1 160.5 1.0 -2,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022686 B3gnt5 ENSMUST00000131557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022686 B3gnt5 ENSMUST00000121344 ENSMUSP00000112624 TRANSLATION protein_coding - CCDS28040.1 1 376.0 0.0 1.0 14.1 160.5 1.0 -2,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022686 B3gnt5 ENSMUST00000155780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022686 B3gnt5 ENSMUST00000152845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022686 B3gnt5 ENSMUST00000119468 ENSMUSP00000113145 TRANSLATION protein_coding - CCDS28040.1 1 376.0 0.0 1.0 14.1 160.5 1.0 -2,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000022686 B3gnt5 ENSMUST00000079780 ENSMUSP00000078712 TRANSLATION protein_coding - CCDS28040.1 1 376.0 0.0 1.0 14.1 160.5 1.0 -2,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000034158 Lrrc58 ENSMUST00000078717 ENSMUSP00000077779 TRANSLATION protein_coding - CCDS37340.1 1 366.0 0.0 1.98 4.4 71.6 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000049502 Dtx3l ENSMUST00000081933 ENSMUSP00000080601 TRANSLATION protein_coding - CCDS37325.1 1 748.0 8.0 1.75 0.0 33.4 0.0 -4,-7 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000049502 Dtx3l ENSMUST00000114885 ENSMUSP00000110535 TRANSLATION protein_coding - - 1 691.0 8.0 0.0 0.0 33.4 0.0 -4,-7 0.0893 13 12.0 MINOR ENSMUSG00000022604 Cep97 ENSMUST00000117468 ENSMUSP00000112687 TRANSLATION protein_coding - - 1 784.0 0.0 2.8 1.0 31.2 0.0 -4,-6 0.1648 12 9.738 MINOR ENSMUSG00000022604 Cep97 ENSMUST00000121703 ENSMUSP00000113470 TRANSLATION protein_coding - CCDS49872.1 1 151.0 0.0 2.53 0.0 31.2 0.0 -4,-5 0.0598 5 9.198 MINOR ENSMUSG00000022604 Cep97 ENSMUST00000122280 ENSMUSP00000113009 TRANSLATION protein_coding - CCDS49871.1 1 157.0 0.0 2.728 0.0 31.2 0.0 -4,-5 0.0586 5 9.594 MINOR ENSMUSG00000022604 Cep97 ENSMUST00000023270 ENSMUSP00000023270 TRANSLATION protein_coding - CCDS28217.1 1 856.0 0.0 3.93 3.1 31.2 0.0 -4,-5 1.0 16 13.0 PRINCIPAL:1 ENSMUSG00000022604 Cep97 ENSMUST00000121129 ENSMUSP00000112502 TRANSLATION protein_coding - CCDS49873.1 1 158.0 0.0 2.86 0.0 31.2 0.0 -4,-5 0.0586 5 9.858 MINOR ENSMUSG00000022604 Cep97 ENSMUST00000118500 ENSMUSP00000112663 TRANSLATION protein_coding - - 1 784.0 0.0 2.8 1.0 31.2 0.0 -4,-6 0.1648 12 9.738 MINOR ENSMUSG00000059920 4930453N24Rik ENSMUST00000162732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059920 4930453N24Rik ENSMUST00000076991 ENSMUSP00000076255 TRANSLATION protein_coding - CCDS28265.1 1 348.0 0.0 0.0 2.0 359.3 0.0 -4,-5 1.0 2 7.0 PRINCIPAL:1 ENSMUSG00000022518 4930562C15Rik ENSMUST00000176394 ENSMUSP00000135119 TRANSLATION nonsense_mediated_decay - - 2 43.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000022518 4930562C15Rik ENSMUST00000180939 - NO_TRANSLATION retained_intron ENSMUSG00000022518 4930562C15Rik ENSMUST00000176982 ENSMUSP00000135347 TRANSLATION nonsense_mediated_decay - - 2 43.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000022518 4930562C15Rik ENSMUST00000175836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022518 4930562C15Rik ENSMUST00000177042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022518 4930562C15Rik ENSMUST00000175762 ENSMUSP00000137827 TRANSLATION nonsense_mediated_decay start - 5 125.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000022518 4930562C15Rik ENSMUST00000100211 ENSMUSP00000097784 TRANSLATION protein_coding - - 5 1145.0 0.0 2.33 0.0 146.5 0.0 -4,-7 0.9679 2 12.0 PRINCIPAL:1 ENSMUSG00000022518 4930562C15Rik ENSMUST00000171105 ENSMUSP00000127814 TRANSLATION protein_coding - - 2 306.0 0.0 1.33 0.0 62.6 0.0 -4,-7 0.0019 - 4.392 MINOR ENSMUSG00000022636 Alcam ENSMUST00000168071 ENSMUSP00000131001 TRANSLATION protein_coding - - 1 133.0 0.0 2.0 1.0 0.0 0.0 4,-1 0.0194 5 0.0 MINOR ENSMUSG00000022636 Alcam ENSMUST00000023312 ENSMUSP00000023312 TRANSLATION protein_coding - CCDS37356.1 1 583.0 0.0 8.95 14.7 110.4 2.0 4,-1 1.0 22 12.0 ALTERNATIVE:1 ENSMUSG00000022636 Alcam ENSMUST00000164728 ENSMUSP00000127141 TRANSLATION protein_coding - - 5 555.0 0.0 8.83 1.0 110.4 2.0 4,-1 0.2432 21 7.76 MINOR ENSMUSG00000022636 Alcam ENSMUST00000164888 - NO_TRANSLATION retained_intron ENSMUSG00000022636 Alcam ENSMUST00000167115 ENSMUSP00000130563 TRANSLATION protein_coding start - 5 345.0 0.0 4.8 0.0 68.9 2.0 -4,-5 0.0005 12 -2.0 MINOR ENSMUSG00000022636 Alcam ENSMUST00000163788 - NO_TRANSLATION retained_intron ENSMUSG00000022636 Alcam ENSMUST00000170035 ENSMUSP00000129714 TRANSLATION protein_coding - CCDS84242.1 5 570.0 0.0 8.75 14.0 110.4 2.0 4,-1 0.9712 23 11.394 PRINCIPAL:3 ENSMUSG00000022817 Itgb5 ENSMUST00000115028 ENSMUSP00000110680 TRANSLATION protein_coding - CCDS49835.1 1 799.0 11.0 12.094 8.8 558.7 2.0 3,-2 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000022817 Itgb5 ENSMUST00000151930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022817 Itgb5 ENSMUST00000231409 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022817 Itgb5 ENSMUST00000148462 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022817 Itgb5 ENSMUST00000069345 ENSMUSP00000069416 TRANSLATION protein_coding - CCDS28135.1 1 816.0 11.0 11.63 0.0 495.6 2.0 3,-2 0.2272 17 13.284 MINOR ENSMUSG00000022817 Itgb5 ENSMUST00000232262 ENSMUSP00000156332 TRANSLATION protein_coding - - - 486.0 0.0 7.744 0.0 213.6 2.0 -4,-5 0.0019 11 0.0 MINOR ENSMUSG00000022817 Itgb5 ENSMUST00000134262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052133 Sema5b ENSMUST00000149855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052133 Sema5b ENSMUST00000133554 - NO_TRANSLATION retained_intron ENSMUSG00000052133 Sema5b ENSMUST00000128966 - NO_TRANSLATION retained_intron ENSMUSG00000052133 Sema5b ENSMUST00000139805 - NO_TRANSLATION retained_intron ENSMUSG00000052133 Sema5b ENSMUST00000120756 ENSMUSP00000112536 TRANSLATION protein_coding - - 1 1122.0 3.0 8.9875 0.3 587.8 2.0 2,-2 0.1507 6 13.428 MINOR ENSMUSG00000052133 Sema5b ENSMUST00000128347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052133 Sema5b ENSMUST00000149097 - NO_TRANSLATION retained_intron ENSMUSG00000052133 Sema5b ENSMUST00000050625 ENSMUSP00000057494 TRANSLATION protein_coding - CCDS28140.1 1 1093.0 3.0 9.55 16.1 595.2 2.0 2,-2 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000022818 Cyp2ab1 ENSMUST00000023513 ENSMUSP00000023513 TRANSLATION protein_coding - CCDS49791.1 5 280.0 26.0 4.6 0.9 267.6 0.0 -4,-2 0.087 - 1.998 MINOR ENSMUSG00000022818 Cyp2ab1 ENSMUST00000182669 - NO_TRANSLATION retained_intron ENSMUSG00000022818 Cyp2ab1 ENSMUST00000182741 ENSMUSP00000138133 TRANSLATION protein_coding - - 5 498.0 32.0 7.8 0.0 400.1 0.0 -2,-4 0.8083 - 18.0 PRINCIPAL:1 ENSMUSG00000022818 Cyp2ab1 ENSMUST00000182736 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022818 Cyp2ab1 ENSMUST00000182508 ENSMUSP00000156220 TRANSLATION protein_coding - CCDS49791.1 5 280.0 26.0 4.6 0.9 267.6 0.0 -4,-2 0.087 - 1.998 MINOR ENSMUSG00000061361 Or2l13b ENSMUST00000078554 ENSMUSP00000077632 TRANSLATION protein_coding - CCDS28036.1 - 312.0 0.0 1.0 11.4 168.9 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061361 Or2l13b ENSMUST00000213480 ENSMUSP00000149405 TRANSLATION protein_coding - CCDS28036.1 5 312.0 0.0 1.0 11.4 168.9 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056822 Or2l13 ENSMUST00000213531 ENSMUSP00000150568 TRANSLATION protein_coding - CCDS28034.1 5 312.0 0.0 1.0 10.4 169.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056822 Or2l13 ENSMUST00000216465 ENSMUSP00000150764 TRANSLATION protein_coding - CCDS28034.1 5 312.0 0.0 1.0 10.4 169.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056822 Or2l13 ENSMUST00000074739 ENSMUSP00000074299 TRANSLATION protein_coding - CCDS28034.1 - 312.0 0.0 1.0 10.4 169.2 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046160 Olig1 ENSMUST00000056882 ENSMUSP00000061408 TRANSLATION protein_coding - CCDS28324.1 - 260.0 0.0 0.4 3.7 46.8 0.0 -4,-2 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000048399 Tprg ENSMUST00000056087 ENSMUSP00000052585 TRANSLATION protein_coding - CCDS28084.1 1 279.0 0.0 3.2 12.5 100.1 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000048399 Tprg ENSMUST00000128595 - NO_TRANSLATION retained_intron ENSMUSG00000033177 Tmprss7 ENSMUST00000170951 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033177 Tmprss7 ENSMUST00000114562 ENSMUSP00000110209 TRANSLATION protein_coding - CCDS37347.2 1 829.0 15.0 3.4 4.7 379.3 0.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000033177 Tmprss7 ENSMUST00000178323 - NO_TRANSLATION retained_intron ENSMUSG00000033177 Tmprss7 ENSMUST00000169421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033177 Tmprss7 ENSMUST00000178150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040785 Ttc3 ENSMUST00000155692 ENSMUSP00000122724 TRANSLATION protein_coding stop - 1 1197.0 0.0 2.974 0.0 0.0 2.0 -4,-7 0.0204 14 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000130960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040785 Ttc3 ENSMUST00000154243 ENSMUSP00000122439 TRANSLATION nonsense_mediated_decay - - 5 106.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000141856 ENSMUSP00000117369 TRANSLATION protein_coding stop - 2 128.0 0.0 0.0 0.0 0.0 2.0 -4,-6 0.0035 2 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000232395 ENSMUSP00000156023 TRANSLATION protein_coding - CCDS37407.1 - 1979.0 8.0 4.064 0.1 40.4 2.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000040785 Ttc3 ENSMUST00000147352 ENSMUSP00000116097 TRANSLATION protein_coding stop - 1 1135.0 0.0 2.974 0.0 0.0 2.0 -4,-5 0.0151 13 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000117648 ENSMUSP00000112801 TRANSLATION protein_coding - CCDS37407.1 5 1979.0 8.0 4.064 0.1 40.4 2.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000040785 Ttc3 ENSMUST00000127667 ENSMUSP00000122425 TRANSLATION protein_coding start/stop - 5 111.0 0.0 2.71 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000151770 ENSMUSP00000121349 TRANSLATION protein_coding stop - 1 1179.0 0.0 2.974 0.0 0.0 2.0 -4,-5 0.0156 13 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000152117 ENSMUSP00000116896 TRANSLATION protein_coding stop - 1 776.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0131 12 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000145883 ENSMUSP00000123442 TRANSLATION protein_coding stop - 5 78.0 0.0 0.0 0.0 0.0 2.0 -4,-6 0.0035 1 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000231850 ENSMUSP00000156316 TRANSLATION nonsense_mediated_decay start - - 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0303 - -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000141176 ENSMUSP00000114483 TRANSLATION protein_coding start/stop - 3 209.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 1 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000153062 ENSMUSP00000115389 TRANSLATION nonsense_mediated_decay - - 5 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000232660 ENSMUSP00000156151 TRANSLATION protein_coding - CCDS37407.1 - 1979.0 8.0 4.064 0.1 40.4 2.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000040785 Ttc3 ENSMUST00000129536 - NO_TRANSLATION retained_intron ENSMUSG00000040785 Ttc3 ENSMUST00000145432 ENSMUSP00000121501 TRANSLATION nonsense_mediated_decay - - 1 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000143145 ENSMUSP00000122650 TRANSLATION nonsense_mediated_decay - - 1 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000153988 ENSMUSP00000118763 TRANSLATION protein_coding stop - 2 469.0 0.0 0.7 0.0 0.0 2.0 -4,-5 0.0035 6 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000149885 ENSMUSP00000122006 TRANSLATION protein_coding stop - 3 58.0 0.0 1.68 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000231915 ENSMUSP00000155956 TRANSLATION nonsense_mediated_decay - - - 325.0 0.0 2.01 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000139607 - NO_TRANSLATION retained_intron ENSMUSG00000040785 Ttc3 ENSMUST00000147046 ENSMUSP00000119265 TRANSLATION protein_coding stop - 1 382.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0044 5 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000141192 ENSMUSP00000117530 TRANSLATION nonsense_mediated_decay start - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000231569 ENSMUSP00000156137 TRANSLATION protein_coding - - - 1624.0 8.0 1.79 0.0 40.4 2.0 -4,-5 0.232 19 13.452 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000150097 ENSMUSP00000119035 TRANSLATION protein_coding stop - 5 125.0 0.0 0.7 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000150346 ENSMUSP00000122726 TRANSLATION protein_coding stop - 1 622.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0098 8 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000122895 ENSMUSP00000123037 TRANSLATION protein_coding stop - 1 1162.0 0.0 2.974 0.0 0.0 2.0 -4,-5 0.0151 14 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000127911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040785 Ttc3 ENSMUST00000149753 - NO_TRANSLATION retained_intron ENSMUSG00000040785 Ttc3 ENSMUST00000151192 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040785 Ttc3 ENSMUST00000119131 ENSMUSP00000113311 TRANSLATION protein_coding - - 1 300.0 0.0 1.35 0.0 0.0 0.0 -4,-5 0.0014 1 0.57 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000232368 ENSMUSP00000156020 TRANSLATION nonsense_mediated_decay start - - 250.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.001 2 -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000139513 ENSMUSP00000117881 TRANSLATION protein_coding stop - 5 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040785 Ttc3 ENSMUST00000154196 ENSMUSP00000156057 TRANSLATION nonsense_mediated_decay start - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022738 Gsc2 ENSMUST00000012279 ENSMUSP00000012279 TRANSLATION protein_coding - - 1 201.0 0.0 1.8 2.0 74.6 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000022738 Gsc2 ENSMUST00000232493 ENSMUSP00000155932 TRANSLATION protein_coding - CCDS49786.1 - 214.0 0.0 1.8 0.1 74.6 0.0 -4,0 0.347 - 8.0 ALTERNATIVE:2 ENSMUSG00000022820 Ndufb4 ENSMUST00000231881 - NO_TRANSLATION retained_intron ENSMUSG00000022820 Ndufb4 ENSMUST00000135019 - NO_TRANSLATION retained_intron ENSMUSG00000022820 Ndufb4 ENSMUST00000023514 ENSMUSP00000023514 TRANSLATION protein_coding - CCDS28161.1 1 129.0 0.0 2.75 23.4 211.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000038965 Ube2l3 ENSMUST00000231557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038965 Ube2l3 ENSMUST00000232594 ENSMUSP00000156000 TRANSLATION protein_coding start - - 32.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000038965 Ube2l3 ENSMUST00000232514 ENSMUSP00000156193 TRANSLATION nonsense_mediated_decay start - - 26.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000038965 Ube2l3 ENSMUST00000232139 ENSMUSP00000156121 TRANSLATION protein_coding - CCDS27997.1 - 154.0 0.0 4.08 34.9 154.2 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000038965 Ube2l3 ENSMUST00000232668 ENSMUSP00000156283 TRANSLATION protein_coding start - - 146.0 0.0 3.712 0.0 149.2 0.0 -4,-5 0.0034 6 -2.0 MINOR ENSMUSG00000038965 Ube2l3 ENSMUST00000231643 ENSMUSP00000156336 TRANSLATION protein_coding - - - 122.0 0.0 2.83 8.9 130.6 0.0 -4,-6 0.1461 6 9.014 MINOR ENSMUSG00000038965 Ube2l3 ENSMUST00000232035 ENSMUSP00000156034 TRANSLATION protein_coding - - - 114.0 0.0 2.844 0.0 112.6 0.0 -4,-5 0.0 3 7.032 MINOR ENSMUSG00000038965 Ube2l3 ENSMUST00000090192 ENSMUSP00000087658 TRANSLATION protein_coding - CCDS27997.1 1 154.0 0.0 4.08 34.9 154.2 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022967 Ifnar1 ENSMUST00000129878 ENSMUSP00000120945 TRANSLATION protein_coding stop - 5 135.0 0.0 1.5 0.0 58.3 0.0 0,-3 0.0013 - -2.0 MINOR ENSMUSG00000022967 Ifnar1 ENSMUST00000232509 ENSMUSP00000156101 TRANSLATION nonsense_mediated_decay - - - 77.0 0.0 0.5 0.0 0.0 0.0 0,-3 0.004 - -2.0 MINOR ENSMUSG00000022967 Ifnar1 ENSMUST00000231604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022967 Ifnar1 ENSMUST00000023689 ENSMUSP00000023689 TRANSLATION protein_coding - CCDS28326.1 1 590.0 0.0 7.08 0.0 187.2 1.0 0,-3 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000022967 Ifnar1 ENSMUST00000232453 ENSMUSP00000156150 TRANSLATION nonsense_mediated_decay start - - 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022967 Ifnar1 ENSMUST00000117748 ENSMUSP00000112670 TRANSLATION protein_coding - CCDS28326.1 1 590.0 0.0 7.08 0.0 187.2 1.0 0,-3 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000022967 Ifnar1 ENSMUST00000123196 ENSMUSP00000119160 TRANSLATION nonsense_mediated_decay - - 5 283.0 0.0 4.64 0.0 141.8 0.0 0,-3 0.0024 1 -2.0 MINOR ENSMUSG00000022967 Ifnar1 ENSMUST00000145008 - NO_TRANSLATION retained_intron ENSMUSG00000041566 Tssk1 ENSMUST00000046937 ENSMUSP00000040302 TRANSLATION protein_coding - CCDS28011.1 - 365.0 17.0 1.0 9.0 223.7 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000048830 2310057N15Rik ENSMUST00000054223 ENSMUSP00000062370 TRANSLATION protein_coding - CCDS28302.1 - 200.0 0.0 0.0 0.0 163.9 0.0 -4,0 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000049362 Or5k1 ENSMUST00000049940 ENSMUSP00000052798 TRANSLATION protein_coding - CCDS28236.1 - 321.0 0.0 1.0 4.7 173.4 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000049362 Or5k1 ENSMUST00000206205 ENSMUSP00000145946 TRANSLATION protein_coding - CCDS28236.1 2 321.0 0.0 1.0 4.7 173.4 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075370 Igll1 ENSMUST00000100136 ENSMUSP00000097713 TRANSLATION protein_coding - CCDS49775.1 5 209.0 0.0 1.6 0.4 94.6 0.0 2,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000075370 Igll1 ENSMUST00000231439 - NO_TRANSLATION retained_intron ENSMUSG00000033355 Rtp4 ENSMUST00000209422 ENSMUSP00000147521 TRANSLATION protein_coding - CCDS28079.1 5 249.0 4.0 0.0 0.0 90.8 1.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000033355 Rtp4 ENSMUST00000211569 ENSMUSP00000147666 TRANSLATION protein_coding stop - 3 143.0 4.0 0.0 0.0 79.3 0.0 -4,-5 0.0023 2 -2.0 MINOR ENSMUSG00000033355 Rtp4 ENSMUST00000210901 ENSMUSP00000147442 TRANSLATION protein_coding - CCDS28079.1 5 249.0 4.0 0.0 0.0 90.8 1.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000033355 Rtp4 ENSMUST00000038423 ENSMUSP00000041091 TRANSLATION protein_coding - CCDS28079.1 1 249.0 4.0 0.0 0.0 90.8 1.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000033355 Rtp4 ENSMUST00000211349 ENSMUSP00000148086 TRANSLATION protein_coding - - 3 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000022877 Hrg ENSMUST00000023590 ENSMUSP00000023590 TRANSLATION protein_coding - CCDS49800.1 1 536.0 0.0 4.44 0.0 0.0 0.0 2,-1 1.0 14 6.0 PRINCIPAL:1 ENSMUSG00000022877 Hrg ENSMUST00000232422 ENSMUSP00000155962 TRANSLATION protein_coding - - - 199.0 0.0 2.84 0.0 0.0 0.0 2,-1 0.0846 5 2.802 MINOR ENSMUSG00000022684 Bfar ENSMUST00000154568 - NO_TRANSLATION retained_intron ENSMUSG00000022684 Bfar ENSMUST00000023365 ENSMUSP00000023365 TRANSLATION protein_coding - CCDS27966.1 1 450.0 8.0 3.0 12.5 72.0 2.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000022684 Bfar ENSMUST00000132349 - NO_TRANSLATION retained_intron ENSMUSG00000022684 Bfar ENSMUST00000230905 - NO_TRANSLATION retained_intron ENSMUSG00000022684 Bfar ENSMUST00000127973 ENSMUSP00000115585 TRANSLATION nonsense_mediated_decay - - 1 176.0 8.0 0.125 0.0 35.8 1.0 -4,-5 0.0015 2 -2.0 MINOR ENSMUSG00000022684 Bfar ENSMUST00000144804 - NO_TRANSLATION retained_intron ENSMUSG00000022684 Bfar ENSMUST00000148079 - NO_TRANSLATION retained_intron ENSMUSG00000022684 Bfar ENSMUST00000069281 ENSMUSP00000063371 TRANSLATION protein_coding - CCDS49769.1 1 325.0 8.0 2.0 1.1 35.8 2.0 -4,-5 0.0139 1 13.011 MINOR ENSMUSG00000099908 Gm28539 ENSMUST00000190050 ENSMUSP00000141101 TRANSLATION nonsense_mediated_decay,RT - - 5 92.0 0.0 1.0 0.0 41.6 0.0 -4,-7 0.7681 - -2.0 PRINCIPAL:1 ENSMUSG00000033918 Parl ENSMUST00000231547 ENSMUSP00000156245 TRANSLATION nonsense_mediated_decay start - - 68.0 0.0 2.0 0.0 53.7 3.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033918 Parl ENSMUST00000136252 ENSMUSP00000119470 TRANSLATION nonsense_mediated_decay - - 5 171.0 0.0 1.2 0.0 0.0 2.0 -4,-2 0.002 4 -2.0 MINOR ENSMUSG00000033918 Parl ENSMUST00000232036 ENSMUSP00000155974 TRANSLATION protein_coding - - - 343.0 0.0 6.78 1.0 50.5 8.0 -4,-2 0.0117 6 6.888 MINOR ENSMUSG00000033918 Parl ENSMUST00000123070 - NO_TRANSLATION retained_intron ENSMUSG00000033918 Parl ENSMUST00000152887 ENSMUSP00000155904 TRANSLATION protein_coding - - 5 188.0 0.0 5.83 0.0 102.4 6.0 -4,-7 0.0543 3 8.1 MINOR ENSMUSG00000033918 Parl ENSMUST00000136700 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033918 Parl ENSMUST00000143648 - NO_TRANSLATION retained_intron ENSMUSG00000033918 Parl ENSMUST00000126001 - NO_TRANSLATION retained_intron ENSMUSG00000033918 Parl ENSMUST00000153275 - NO_TRANSLATION retained_intron ENSMUSG00000033918 Parl ENSMUST00000133153 ENSMUSP00000119060 TRANSLATION nonsense_mediated_decay - - 3 119.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000033918 Parl ENSMUST00000048642 ENSMUSP00000045361 TRANSLATION protein_coding - CCDS28044.1 1 377.0 0.0 7.78 11.3 102.4 9.0 -4,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000033918 Parl ENSMUST00000155832 - NO_TRANSLATION retained_intron ENSMUSG00000033918 Parl ENSMUST00000232484 ENSMUSP00000156379 TRANSLATION nonsense_mediated_decay - - - 103.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000022679 Mpv17l ENSMUST00000148966 ENSMUSP00000116298 TRANSLATION nonsense_mediated_decay - - 2 116.0 0.0 1.0 0.1 0.0 0.0 -1,-4 0.001 - -2.0 MINOR ENSMUSG00000022679 Mpv17l ENSMUST00000023360 ENSMUSP00000023360 TRANSLATION protein_coding - CCDS27970.1 1 194.0 0.0 3.83 11.8 70.3 0.0 -1,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022679 Mpv17l ENSMUST00000141971 ENSMUSP00000123424 TRANSLATION protein_coding - - 1 104.0 0.0 3.13 0.0 70.3 0.0 -4,-7 0.0035 - 10.602 MINOR ENSMUSG00000022679 Mpv17l ENSMUST00000124947 ENSMUSP00000117826 TRANSLATION protein_coding - CCDS79426.1 3 90.0 0.0 2.83 2.2 70.3 0.0 -4,-6 0.2292 - 10.335 MINOR ENSMUSG00000022679 Mpv17l ENSMUST00000143697 ENSMUSP00000116147 TRANSLATION protein_coding - CCDS79425.1 2 147.0 0.0 2.014 0.0 0.0 0.0 -1,-4 0.0084 - 2.37 MINOR ENSMUSG00000022679 Mpv17l ENSMUST00000128757 ENSMUSP00000120169 TRANSLATION protein_coding - CCDS79423.1 1 96.0 0.0 3.16 0.1 70.3 0.0 -4,-7 0.0833 - 10.662 MINOR ENSMUSG00000022679 Mpv17l ENSMUST00000156143 ENSMUSP00000123656 TRANSLATION protein_coding stop - 3 73.0 0.0 2.212 0.0 70.3 0.0 -4,-6 0.0014 - -2.0 MINOR ENSMUSG00000014303 Glis2 ENSMUST00000122896 - NO_TRANSLATION retained_intron ENSMUSG00000014303 Glis2 ENSMUST00000141682 ENSMUSP00000115728 TRANSLATION protein_coding stop - 3 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014303 Glis2 ENSMUST00000135577 - NO_TRANSLATION retained_intron ENSMUSG00000014303 Glis2 ENSMUST00000127120 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014303 Glis2 ENSMUST00000014447 ENSMUSP00000014447 TRANSLATION protein_coding - CCDS27920.1 1 521.0 20.0 2.0 10.3 63.4 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000116542 Cd200l2 ENSMUST00000232600 ENSMUSP00000155928 TRANSLATION protein_coding - - - 320.0 0.0 0.859 0.0 32.4 0.0 0,-3 0.8157 - 12.0 PRINCIPAL:1 ENSMUSG00000051980 Casr ENSMUST00000172826 ENSMUSP00000133500 TRANSLATION protein_coding - CCDS28154.1 5 1079.0 0.0 5.4 8.0 643.4 10.0 4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000051980 Casr ENSMUST00000174750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051980 Casr ENSMUST00000114847 ENSMUSP00000110496 TRANSLATION protein_coding - - 1 1002.0 0.0 4.4 0.0 597.2 10.0 4,-1 0.0207 4 7.23 MINOR ENSMUSG00000051980 Casr ENSMUST00000063597 ENSMUSP00000069080 TRANSLATION protein_coding - CCDS28154.1 1 1079.0 0.0 5.4 8.0 643.4 10.0 4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000022517 Mgrn1 ENSMUST00000230990 ENSMUSP00000155425 TRANSLATION protein_coding - - - 554.0 8.0 0.89 11.2 52.3 0.0 -4,-5 0.7921 5 17.292 ALTERNATIVE:1 ENSMUSG00000022517 Mgrn1 ENSMUST00000023159 ENSMUSP00000023159 TRANSLATION protein_coding - - 1 556.0 8.0 0.89 7.5 52.3 0.0 -4,-5 0.6963 5 16.096 MINOR ENSMUSG00000022517 Mgrn1 ENSMUST00000070658 ENSMUSP00000068314 TRANSLATION protein_coding - CCDS49751.1 1 532.0 8.0 0.89 13.4 52.3 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:4 ENSMUSG00000022517 Mgrn1 ENSMUST00000230108 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022517 Mgrn1 ENSMUST00000230220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022517 Mgrn1 ENSMUST00000230738 - NO_TRANSLATION retained_intron ENSMUSG00000022517 Mgrn1 ENSMUST00000230653 - NO_TRANSLATION retained_intron ENSMUSG00000022517 Mgrn1 ENSMUST00000229038 ENSMUSP00000155034 TRANSLATION protein_coding - CCDS57016.1 - 533.0 8.0 0.89 10.1 52.3 0.0 -4,-5 0.9669 4 16.936 ALTERNATIVE:1 ENSMUSG00000071636 Rimbp3 ENSMUST00000169803 ENSMUSP00000127909 TRANSLATION protein_coding - CCDS27998.2 - 1606.0 0.0 0.0 0.1 90.1 0.0 -4,-6 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000021018 Polr2h ENSMUST00000231392 ENSMUSP00000155967 TRANSLATION protein_coding - - - 143.0 0.0 3.66 0.0 149.6 0.0 0,-5 0.0107 4 8.49 MINOR ENSMUSG00000021018 Polr2h ENSMUST00000021405 ENSMUSP00000021405 TRANSLATION protein_coding - CCDS28058.1 1 150.0 0.0 4.41 32.2 183.1 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000021018 Polr2h ENSMUST00000161038 ENSMUSP00000155920 TRANSLATION protein_coding stop - 5 108.0 0.0 3.33 0.0 123.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000021018 Polr2h ENSMUST00000231656 ENSMUSP00000155895 TRANSLATION protein_coding - - - 91.0 0.0 1.73 0.0 63.6 0.0 -4,-5 0.0 1 0.642 MINOR ENSMUSG00000022715 Tmem114 ENSMUST00000023400 ENSMUSP00000023400 TRANSLATION protein_coding - CCDS27937.1 1 222.0 0.0 0.566 9.7 107.0 0.0 0,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074928 Krtap14 ENSMUST00000189774 ENSMUSP00000139983 TRANSLATION protein_coding - CCDS79476.1 - 167.0 0.0 0.0 5.9 174.4 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000037991 Rmi2 ENSMUST00000037913 ENSMUSP00000042676 TRANSLATION protein_coding - CCDS49761.1 1 149.0 0.0 2.0 3.0 148.7 0.0 -4,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000037991 Rmi2 ENSMUST00000181721 ENSMUSP00000137986 TRANSLATION nonsense_mediated_decay - - 1 145.0 0.0 1.32 0.0 58.7 0.0 -4,-2 0.0481 - -2.0 MINOR ENSMUSG00000022668 Gtpbp8 ENSMUST00000161436 ENSMUSP00000123974 TRANSLATION protein_coding start - 5 234.0 17.0 4.225 0.0 26.8 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000022668 Gtpbp8 ENSMUST00000162512 ENSMUSP00000125352 TRANSLATION protein_coding - CCDS28188.1 1 285.0 24.0 5.225 4.3 67.9 0.0 -4,0 1.0 6 19.922 PRINCIPAL:1 ENSMUSG00000022668 Gtpbp8 ENSMUST00000162479 ENSMUSP00000124621 TRANSLATION nonsense_mediated_decay start - 3 147.0 17.0 1.807 0.0 26.5 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000022668 Gtpbp8 ENSMUST00000023348 ENSMUSP00000023348 TRANSLATION protein_coding - CCDS49855.1 1 218.0 14.0 4.625 0.0 68.8 0.0 -4,0 0.0518 3 10.8 MINOR ENSMUSG00000034064 Poglut1 ENSMUST00000148093 - NO_TRANSLATION retained_intron ENSMUSG00000034064 Poglut1 ENSMUST00000036210 ENSMUSP00000038166 TRANSLATION protein_coding - CCDS28170.1 1 392.0 0.0 9.0 2.9 393.9 0.0 4,-3 1.0 11 13.0 PRINCIPAL:1 ENSMUSG00000034064 Poglut1 ENSMUST00000137762 - NO_TRANSLATION retained_intron ENSMUSG00000034064 Poglut1 ENSMUST00000149704 - NO_TRANSLATION retained_intron ENSMUSG00000034064 Poglut1 ENSMUST00000153187 - NO_TRANSLATION retained_intron ENSMUSG00000022849 Hspbap1 ENSMUST00000231579 ENSMUSP00000156217 TRANSLATION protein_coding - CCDS28142.1 - 483.0 3.0 3.382 0.4 122.8 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000022849 Hspbap1 ENSMUST00000231802 - NO_TRANSLATION retained_intron ENSMUSG00000022849 Hspbap1 ENSMUST00000023555 ENSMUSP00000023555 TRANSLATION nonsense_mediated_decay - - 1 253.0 2.0 1.132 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052276 Ostn ENSMUST00000066852 ENSMUSP00000067539 TRANSLATION protein_coding - CCDS28090.1 1 130.0 0.0 0.0 16.9 216.7 0.0 2,-3 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000065979 Cpped1 ENSMUST00000127972 ENSMUSP00000119989 TRANSLATION protein_coding stop - 3 240.0 5.0 3.25 0.0 37.9 0.0 -4,-6 0.0003 4 -2.0 MINOR ENSMUSG00000065979 Cpped1 ENSMUST00000073371 ENSMUSP00000089104 TRANSLATION protein_coding - - 1 153.0 2.0 2.25 0.0 0.0 0.0 -4,-7 0.0 4 2.214 MINOR ENSMUSG00000065979 Cpped1 ENSMUST00000145169 - NO_TRANSLATION retained_intron ENSMUSG00000065979 Cpped1 ENSMUST00000096272 ENSMUSP00000093992 TRANSLATION protein_coding - CCDS27964.1 1 312.0 7.0 5.0 17.7 49.8 0.0 -4,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000065979 Cpped1 ENSMUST00000121750 ENSMUSP00000112587 TRANSLATION protein_coding - - 1 298.0 6.0 4.5 0.0 49.3 0.0 -4,-6 0.0193 5 16.08 MINOR ENSMUSG00000006958 Chrd ENSMUST00000232104 - NO_TRANSLATION retained_intron ENSMUSG00000006958 Chrd ENSMUST00000115423 ENSMUSP00000111083 TRANSLATION protein_coding - - 2 605.0 0.0 0.0 0.0 115.2 0.0 1,-2 0.0047 4 0.0 MINOR ENSMUSG00000006958 Chrd ENSMUST00000007171 ENSMUSP00000007171 TRANSLATION protein_coding - CCDS28059.1 1 948.0 0.0 0.48 0.4 203.9 0.0 1,-2 1.0 5 8.0 PRINCIPAL:2 ENSMUSG00000006958 Chrd ENSMUST00000151150 - NO_TRANSLATION retained_intron ENSMUSG00000006958 Chrd ENSMUST00000231698 ENSMUSP00000156323 TRANSLATION nonsense_mediated_decay - - - 349.0 0.0 0.0 0.0 40.9 0.0 1,-2 0.0022 1 -2.0 MINOR ENSMUSG00000006958 Chrd ENSMUST00000231689 - NO_TRANSLATION retained_intron ENSMUSG00000006958 Chrd ENSMUST00000153299 ENSMUSP00000138259 TRANSLATION nonsense_mediated_decay - - 1 242.0 0.0 0.0 0.0 40.9 0.0 1,-2 0.0022 1 -2.0 MINOR ENSMUSG00000006958 Chrd ENSMUST00000232646 ENSMUSP00000156080 TRANSLATION protein_coding - - - 970.0 0.0 0.48 0.4 203.9 0.0 1,-2 0.3408 5 8.0 ALTERNATIVE:2 ENSMUSG00000006958 Chrd ENSMUST00000232020 - NO_TRANSLATION retained_intron ENSMUSG00000006958 Chrd ENSMUST00000231636 ENSMUSP00000156160 TRANSLATION nonsense_mediated_decay - - - 242.0 0.0 0.0 0.0 40.9 0.0 1,-2 0.0022 - -2.0 MINOR ENSMUSG00000047293 Gpr15 ENSMUST00000089318 ENSMUSP00000086731 TRANSLATION protein_coding - CCDS49879.1 - 360.0 0.0 1.0 8.5 155.4 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000022809 Nr1i2 ENSMUST00000023504 ENSMUSP00000023504 TRANSLATION protein_coding - CCDS28164.1 1 431.0 8.0 6.9 2.1 160.2 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000022673 Mcm4 ENSMUST00000230437 ENSMUSP00000155284 TRANSLATION protein_coding start/stop - - 220.0 4.0 4.26 0.0 80.2 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000022673 Mcm4 ENSMUST00000023353 ENSMUSP00000023353 TRANSLATION protein_coding - CCDS27977.1 1 862.0 20.0 12.26 25.2 645.5 0.0 -4,-1 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000022673 Mcm4 ENSMUST00000229606 ENSMUSP00000155603 TRANSLATION protein_coding start - - 86.0 0.0 2.35 0.0 55.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000091039 Krtap20-2 ENSMUST00000169954 ENSMUSP00000126264 TRANSLATION protein_coding - CCDS49900.1 - 60.0 0.0 0.0 0.0 42.7 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000091243 Vgll3 ENSMUST00000168064 ENSMUSP00000131500 TRANSLATION protein_coding - CCDS49884.1 1 325.0 0.0 1.5 9.9 68.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091243 Vgll3 ENSMUST00000227997 ENSMUSP00000153843 TRANSLATION protein_coding - - - 270.0 0.0 1.0 9.9 31.0 0.0 -4,-5 0.4065 - 9.738 MINOR ENSMUSG00000091243 Vgll3 ENSMUST00000228708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022853 Ehhadh ENSMUST00000023559 ENSMUSP00000023559 TRANSLATION protein_coding - CCDS28063.1 1 718.0 39.0 6.75 13.2 445.8 0.0 -4,-6 1.0 31 22.0 PRINCIPAL:1 ENSMUSG00000022894 Adamts5 ENSMUST00000023611 ENSMUSP00000023611 TRANSLATION protein_coding - CCDS28288.1 1 930.0 17.0 6.7 0.4 298.1 0.0 3,-2 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000041957 Pkp2 ENSMUST00000162150 - NO_TRANSLATION retained_intron ENSMUSG00000041957 Pkp2 ENSMUST00000161342 - NO_TRANSLATION retained_intron ENSMUSG00000041957 Pkp2 ENSMUST00000039408 ENSMUSP00000036890 TRANSLATION protein_coding - CCDS27981.1 1 795.0 0.0 6.43 0.4 59.9 0.0 -4,-5 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000044117 Bmerb1 ENSMUST00000131608 ENSMUSP00000122790 TRANSLATION protein_coding stop - 2 98.0 0.0 2.915 0.0 51.7 0.0 -4,-5 0.0004 3 -2.0 MINOR ENSMUSG00000044117 Bmerb1 ENSMUST00000118412 ENSMUSP00000112435 TRANSLATION protein_coding - - 3 112.0 0.0 1.75 0.0 28.2 0.0 -4,-5 0.0 2 4.446 MINOR ENSMUSG00000044117 Bmerb1 ENSMUST00000056521 ENSMUSP00000062758 TRANSLATION protein_coding - CCDS27971.1 1 203.0 0.0 3.75 19.5 69.2 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000022964 Tmem50b ENSMUST00000141885 ENSMUSP00000116602 TRANSLATION nonsense_mediated_decay - - 3 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022964 Tmem50b ENSMUST00000133180 ENSMUSP00000120087 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022964 Tmem50b ENSMUST00000023686 ENSMUSP00000023686 TRANSLATION protein_coding - CCDS28328.1 1 158.0 0.0 0.0 33.9 170.0 0.0 -4,-7 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000022957 Itsn1 ENSMUST00000153741 ENSMUSP00000117320 TRANSLATION nonsense_mediated_decay start - 1 77.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000126374 ENSMUSP00000114718 TRANSLATION nonsense_mediated_decay start - 1 73.0 0.0 1.3 0.0 24.7 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000232198 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022957 Itsn1 ENSMUST00000114001 ENSMUSP00000109634 TRANSLATION protein_coding - - 5 1176.0 10.0 14.18 1.0 414.1 0.0 -4,-7 0.0383 32 6.4 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000141625 ENSMUSP00000115563 TRANSLATION protein_coding start/stop - 5 173.0 0.0 4.33 0.0 91.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000154967 - NO_TRANSLATION retained_intron ENSMUSG00000022957 Itsn1 ENSMUST00000125052 ENSMUSP00000115985 TRANSLATION protein_coding start/stop - 5 346.0 0.0 8.08 0.0 359.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000141073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022957 Itsn1 ENSMUST00000113999 ENSMUSP00000109632 TRANSLATION protein_coding - - 5 1218.0 10.0 14.18 6.8 410.6 0.0 -4,-7 0.3754 33 8.451 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000131739 ENSMUSP00000114145 TRANSLATION nonsense_mediated_decay start - 1 66.0 0.0 1.033 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000113993 ENSMUSP00000109626 TRANSLATION protein_coding - - 5 1147.0 10.0 12.93 3.8 369.2 0.0 -4,-7 0.1355 29 7.182 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000231535 ENSMUSP00000156037 TRANSLATION protein_coding stop - - 131.0 5.0 3.08 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000231852 ENSMUSP00000156129 TRANSLATION protein_coding - - - 279.0 0.0 6.83 0.0 312.5 0.0 -4,-7 0.0 3 0.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000138117 - NO_TRANSLATION retained_intron ENSMUSG00000022957 Itsn1 ENSMUST00000131983 - NO_TRANSLATION retained_intron ENSMUSG00000022957 Itsn1 ENSMUST00000114002 ENSMUSP00000109635 TRANSLATION protein_coding - CCDS37402.1 5 1714.0 10.0 26.26 6.6 892.6 0.0 -4,-7 1.0 40 16.367 ALTERNATIVE:1 ENSMUSG00000022957 Itsn1 ENSMUST00000095909 ENSMUSP00000093598 TRANSLATION protein_coding - CCDS49914.1 1 621.0 10.0 5.83 0.0 0.0 0.0 -4,-7 0.0079 9 6.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000156841 - NO_TRANSLATION retained_intron ENSMUSG00000022957 Itsn1 ENSMUST00000143023 ENSMUSP00000119654 TRANSLATION protein_coding start - 1 256.0 0.0 1.0 0.0 157.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000064797 ENSMUSP00000066361 TRANSLATION protein_coding - - 5 1719.0 10.0 26.26 8.1 889.1 0.0 -4,-7 0.8887 41 16.6 PRINCIPAL:3 ENSMUSG00000022957 Itsn1 ENSMUST00000137575 ENSMUSP00000156103 TRANSLATION nonsense_mediated_decay start - 1 16.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.021 - -2.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000113996 ENSMUSP00000109629 TRANSLATION protein_coding - - 5 1142.0 10.0 12.93 5.0 372.7 0.0 -4,-7 0.2252 28 7.689 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000135057 ENSMUSP00000117018 TRANSLATION protein_coding stop - 5 359.0 10.0 5.83 0.0 0.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000151044 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022957 Itsn1 ENSMUST00000231735 ENSMUSP00000156289 TRANSLATION protein_coding - - - 279.0 0.0 6.83 0.0 312.5 0.0 -4,-7 0.0 3 0.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000144101 - NO_TRANSLATION retained_intron ENSMUSG00000022957 Itsn1 ENSMUST00000124094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022957 Itsn1 ENSMUST00000139890 - NO_TRANSLATION retained_intron ENSMUSG00000022957 Itsn1 ENSMUST00000056482 ENSMUSP00000056011 TRANSLATION protein_coding - CCDS49913.1 1 1213.0 10.0 14.18 6.5 414.1 0.0 -4,-7 0.3969 32 8.725 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000231974 ENSMUSP00000155993 TRANSLATION protein_coding stop - - 187.0 5.0 3.08 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000022957 Itsn1 ENSMUST00000133389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039345 Mettl22 ENSMUST00000133208 - NO_TRANSLATION retained_intron ENSMUSG00000039345 Mettl22 ENSMUST00000150790 ENSMUSP00000114563 TRANSLATION protein_coding stop - 5 119.0 13.0 1.50175 0.0 21.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039345 Mettl22 ENSMUST00000229757 - NO_TRANSLATION retained_intron ENSMUSG00000039345 Mettl22 ENSMUST00000046470 ENSMUSP00000044108 TRANSLATION protein_coding - CCDS27938.1 1 393.0 19.0 3.13375 0.7 58.6 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000039345 Mettl22 ENSMUST00000142899 ENSMUSP00000120894 TRANSLATION protein_coding stop - 3 208.0 11.0 2.124 0.0 43.9 0.0 -4,-7 0.0012 1 -2.0 MINOR ENSMUSG00000039345 Mettl22 ENSMUST00000151233 - NO_TRANSLATION retained_intron ENSMUSG00000022945 Chaf1b ENSMUST00000143006 ENSMUSP00000155864 TRANSLATION nonsense_mediated_decay start - 3 34.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000022945 Chaf1b ENSMUST00000117099 ENSMUSP00000113684 TRANSLATION protein_coding - CCDS28344.1 5 572.0 0.0 5.142 0.4 308.5 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000022945 Chaf1b ENSMUST00000142316 ENSMUSP00000121034 TRANSLATION protein_coding stop - 2 79.0 0.0 1.4 0.0 19.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022945 Chaf1b ENSMUST00000023666 ENSMUSP00000023666 TRANSLATION protein_coding - CCDS28344.1 1 572.0 0.0 5.142 0.4 308.5 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000022945 Chaf1b ENSMUST00000120586 ENSMUSP00000113420 TRANSLATION protein_coding stop - 5 96.0 0.0 1.794 0.0 41.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000022945 Chaf1b ENSMUST00000124313 - NO_TRANSLATION retained_intron ENSMUSG00000022945 Chaf1b ENSMUST00000128316 - NO_TRANSLATION retained_intron ENSMUSG00000043982 Krtap19-4 ENSMUST00000051103 ENSMUSP00000056250 TRANSLATION protein_coding - CCDS37387.1 - 84.0 0.0 0.0 0.0 46.5 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060480 Or2aj6 ENSMUST00000205467 ENSMUSP00000145692 TRANSLATION protein_coding - - 2 313.0 0.0 1.0 7.3 146.9 7.0 -4,-5 0.7646 - 10.172 ALTERNATIVE:1 ENSMUSG00000060480 Or2aj6 ENSMUST00000079891 ENSMUSP00000078814 TRANSLATION protein_coding - CCDS28039.1 - 314.0 0.0 1.0 9.7 146.9 7.0 -4,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000022754 Tmem45a ENSMUST00000148452 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022754 Tmem45a ENSMUST00000232373 ENSMUSP00000155931 TRANSLATION protein_coding stop - - 131.0 0.0 1.8 0.0 0.0 5.0 -4,-2 0.0043 - -2.0 MINOR ENSMUSG00000022754 Tmem45a ENSMUST00000135672 ENSMUSP00000116978 TRANSLATION protein_coding stop - 3 47.0 0.0 0.6 0.0 0.0 2.0 -4,-2 0.0006 - -2.0 MINOR ENSMUSG00000022754 Tmem45a ENSMUST00000023435 ENSMUSP00000023435 TRANSLATION protein_coding - CCDS28226.1 1 273.0 0.0 4.2 2.7 119.9 8.0 -4,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000039646 Vasn ENSMUST00000138044 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039646 Vasn ENSMUST00000038770 ENSMUSP00000045162 TRANSLATION protein_coding - CCDS27921.1 1 673.0 0.0 0.2 0.4 136.0 0.0 4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000068078 2310034C09Rik ENSMUST00000089111 ENSMUSP00000140130 TRANSLATION protein_coding - CCDS79475.1 - 214.0 0.0 0.0 0.0 141.9 0.0 -4,0 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000022757 Tfg ENSMUST00000121554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022757 Tfg ENSMUST00000128551 ENSMUSP00000119561 TRANSLATION protein_coding stop - 5 103.0 0.0 0.96 0.0 48.3 0.0 -4,-5 0.0365 3 -2.0 MINOR ENSMUSG00000022757 Tfg ENSMUST00000127994 ENSMUSP00000121564 TRANSLATION protein_coding start - 5 220.0 0.0 0.48 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022757 Tfg ENSMUST00000065515 ENSMUSP00000067867 TRANSLATION protein_coding - CCDS28224.1 1 397.0 0.0 0.835 17.6 48.3 0.0 -4,-5 1.0 7 15.22 PRINCIPAL:1 ENSMUSG00000022757 Tfg ENSMUST00000141404 ENSMUSP00000117405 TRANSLATION protein_coding stop - 3 89.0 0.0 0.93 0.0 46.2 0.0 -4,-5 0.0271 3 -2.0 MINOR ENSMUSG00000022757 Tfg ENSMUST00000136394 ENSMUSP00000120677 TRANSLATION protein_coding stop - 1 131.0 0.0 0.835 0.0 48.3 0.0 -4,-5 0.013 3 -2.0 MINOR ENSMUSG00000022540 Rogdi ENSMUST00000201118 - NO_TRANSLATION retained_intron ENSMUSG00000022540 Rogdi ENSMUST00000201077 ENSMUSP00000144166 TRANSLATION protein_coding stop - 2 134.0 0.0 3.107 0.0 0.0 0.0 -4,-5 0.0008 6 -2.0 MINOR ENSMUSG00000022540 Rogdi ENSMUST00000201726 - NO_TRANSLATION retained_intron ENSMUSG00000022540 Rogdi ENSMUST00000202720 - NO_TRANSLATION retained_intron ENSMUSG00000022540 Rogdi ENSMUST00000023191 ENSMUSP00000023191 TRANSLATION protein_coding - - 1 309.0 0.0 6.525 0.0 0.0 0.0 -4,-5 0.0125 9 4.5 MINOR ENSMUSG00000022540 Rogdi ENSMUST00000201651 - NO_TRANSLATION retained_intron ENSMUSG00000022540 Rogdi ENSMUST00000202281 ENSMUSP00000144481 TRANSLATION protein_coding - CCDS79419.1 1 287.0 0.0 7.275 5.4 0.0 0.0 -4,-5 1.0 10 8.0 PRINCIPAL:1 ENSMUSG00000022540 Rogdi ENSMUST00000202998 - NO_TRANSLATION retained_intron ENSMUSG00000022540 Rogdi ENSMUST00000202640 - NO_TRANSLATION retained_intron ENSMUSG00000022878 Adipoq ENSMUST00000023593 ENSMUSP00000023593 TRANSLATION protein_coding - CCDS28075.1 1 247.0 3.0 2.0 0.0 179.0 0.0 4,-1 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000022878 Adipoq ENSMUST00000171309 ENSMUSP00000126793 TRANSLATION protein_coding stop - 3 168.0 0.0 1.0 0.0 37.0 0.0 2,-2 0.0 4 -2.0 MINOR ENSMUSG00000022902 Stfa2 ENSMUST00000023619 ENSMUSP00000023619 TRANSLATION protein_coding - CCDS37334.1 1 103.0 0.0 2.75 0.1 80.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048810 Or5ac20 ENSMUST00000201687 ENSMUSP00000144622 TRANSLATION protein_coding - CCDS28252.1 5 307.0 0.0 1.0 11.5 158.8 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048810 Or5ac20 ENSMUST00000049859 ENSMUSP00000059496 TRANSLATION protein_coding - CCDS28252.1 - 307.0 0.0 1.0 11.5 158.8 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048810 Or5ac20 ENSMUST00000217485 ENSMUSP00000151058 TRANSLATION protein_coding - CCDS28252.1 5 307.0 0.0 1.0 11.5 158.8 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043008 Klhl6 ENSMUST00000058839 ENSMUSP00000053023 TRANSLATION protein_coding - CCDS28041.2 1 619.0 0.0 6.8 10.3 298.5 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000043008 Klhl6 ENSMUST00000165530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043008 Klhl6 ENSMUST00000171910 - NO_TRANSLATION retained_intron ENSMUSG00000043008 Klhl6 ENSMUST00000166801 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022858 Tra2b ENSMUST00000161286 ENSMUSP00000124846 TRANSLATION protein_coding - CCDS37297.1 1 288.0 0.0 2.7695 11.3 77.3 0.0 -4,-5 1.0 6 11.0 PRINCIPAL:2 ENSMUSG00000022858 Tra2b ENSMUST00000023564 ENSMUSP00000023564 TRANSLATION protein_coding - CCDS84216.1 3 188.0 0.0 2.7695 7.7 77.3 0.0 -4,-7 0.7028 6 9.95 ALTERNATIVE:1 ENSMUSG00000022858 Tra2b ENSMUST00000232411 - NO_TRANSLATION retained_intron ENSMUSG00000022858 Tra2b ENSMUST00000161774 - NO_TRANSLATION retained_intron ENSMUSG00000022858 Tra2b ENSMUST00000231312 ENSMUSP00000156348 TRANSLATION nonsense_mediated_decay - - - 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022858 Tra2b ENSMUST00000232471 ENSMUSP00000156222 TRANSLATION nonsense_mediated_decay - - - 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022858 Tra2b ENSMUST00000162413 ENSMUSP00000123782 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022858 Tra2b ENSMUST00000160579 - NO_TRANSLATION retained_intron ENSMUSG00000022858 Tra2b ENSMUST00000159946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022855 Senp2 ENSMUST00000232679 ENSMUSP00000156326 TRANSLATION nonsense_mediated_decay - - - 105.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000022855 Senp2 ENSMUST00000231798 ENSMUSP00000156045 TRANSLATION nonsense_mediated_decay start - - 64.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000022855 Senp2 ENSMUST00000231724 ENSMUSP00000156004 TRANSLATION nonsense_mediated_decay - - - 63.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000022855 Senp2 ENSMUST00000231632 ENSMUSP00000156157 TRANSLATION protein_coding stop - - 29.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000022855 Senp2 ENSMUST00000232263 ENSMUSP00000156054 TRANSLATION nonsense_mediated_decay start - - 222.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000022855 Senp2 ENSMUST00000023561 ENSMUSP00000023561 TRANSLATION protein_coding - CCDS28065.1 1 588.0 5.0 5.25 8.2 130.0 0.0 -4,0 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000022855 Senp2 ENSMUST00000232534 ENSMUSP00000155909 TRANSLATION protein_coding stop - - 198.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000022855 Senp2 ENSMUST00000231408 - NO_TRANSLATION retained_intron ENSMUSG00000064310 Zpld1 ENSMUST00000143914 ENSMUSP00000119774 TRANSLATION protein_coding - CCDS28215.1 1 415.0 0.0 0.918 29.6 136.8 1.0 4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000064310 Zpld1 ENSMUST00000036412 ENSMUSP00000049012 TRANSLATION protein_coding - CCDS28215.1 1 415.0 0.0 0.918 29.6 136.8 1.0 4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000022779 Top3b ENSMUST00000232656 - NO_TRANSLATION retained_intron ENSMUSG00000022779 Top3b ENSMUST00000232153 - NO_TRANSLATION retained_intron ENSMUSG00000022779 Top3b ENSMUST00000231966 ENSMUSP00000156239 TRANSLATION protein_coding start/stop - - 154.0 9.0 2.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022779 Top3b ENSMUST00000232380 - NO_TRANSLATION retained_intron ENSMUSG00000022779 Top3b ENSMUST00000231812 ENSMUSP00000156369 TRANSLATION protein_coding stop - - 69.0 1.0 2.33 0.0 29.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000022779 Top3b ENSMUST00000231576 - NO_TRANSLATION retained_intron ENSMUSG00000022779 Top3b ENSMUST00000232200 ENSMUSP00000155870 TRANSLATION protein_coding stop - - 55.0 1.0 1.83 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000022779 Top3b ENSMUST00000231278 - NO_TRANSLATION retained_intron ENSMUSG00000022779 Top3b ENSMUST00000232017 ENSMUSP00000155905 TRANSLATION protein_coding stop - - 233.0 1.0 6.41 0.0 126.5 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000022779 Top3b ENSMUST00000231402 - NO_TRANSLATION retained_intron ENSMUSG00000022779 Top3b ENSMUST00000232523 - NO_TRANSLATION retained_intron ENSMUSG00000022779 Top3b ENSMUST00000232231 ENSMUSP00000155935 TRANSLATION protein_coding stop - - 118.0 1.0 3.83 0.0 46.8 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000022779 Top3b ENSMUST00000023465 ENSMUSP00000023465 TRANSLATION protein_coding - CCDS27990.1 1 862.0 12.0 18.91 32.8 467.1 0.0 -4,-6 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000022779 Top3b ENSMUST00000232080 ENSMUSP00000155903 TRANSLATION protein_coding stop - - 289.0 1.0 7.91 0.0 160.5 0.0 -4,-6 0.0004 5 -2.0 MINOR ENSMUSG00000022779 Top3b ENSMUST00000232117 ENSMUSP00000156322 TRANSLATION protein_coding start - - 527.0 9.0 11.5 0.0 363.1 0.0 -4,-5 0.0002 13 -2.0 MINOR ENSMUSG00000022779 Top3b ENSMUST00000232531 - NO_TRANSLATION retained_intron ENSMUSG00000022779 Top3b ENSMUST00000232581 ENSMUSP00000156132 TRANSLATION protein_coding - CCDS27990.1 - 862.0 12.0 18.91 32.8 467.1 0.0 -4,-6 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000022779 Top3b ENSMUST00000231432 - NO_TRANSLATION retained_intron ENSMUSG00000022779 Top3b ENSMUST00000232547 ENSMUSP00000156017 TRANSLATION protein_coding stop - - 33.0 1.0 1.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022779 Top3b ENSMUST00000231834 - NO_TRANSLATION retained_intron ENSMUSG00000022799 Arhgap31 ENSMUST00000132697 - NO_TRANSLATION retained_intron ENSMUSG00000022799 Arhgap31 ENSMUST00000023487 ENSMUSP00000023487 TRANSLATION protein_coding - CCDS28172.1 1 1425.0 0.0 5.55 0.4 152.1 0.0 -4,-5 1.0 30 12.0 PRINCIPAL:1 ENSMUSG00000022799 Arhgap31 ENSMUST00000124866 - NO_TRANSLATION retained_intron ENSMUSG00000022724 Riox2 ENSMUST00000160571 ENSMUSP00000125297 TRANSLATION protein_coding - CCDS28257.1 1 465.0 3.0 8.4475 9.9 327.2 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000022724 Riox2 ENSMUST00000131272 - NO_TRANSLATION retained_intron ENSMUSG00000022724 Riox2 ENSMUST00000120667 ENSMUSP00000112950 TRANSLATION protein_coding - - 1 156.0 0.0 2.0 0.0 78.8 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000022724 Riox2 ENSMUST00000120674 ENSMUSP00000112899 TRANSLATION protein_coding - - 1 373.0 3.0 7.0 0.0 322.7 0.0 -4,-5 0.007 5 11.838 MINOR ENSMUSG00000022724 Riox2 ENSMUST00000023407 ENSMUSP00000023407 TRANSLATION protein_coding - CCDS28257.1 1 465.0 3.0 8.4475 9.9 327.2 0.0 -4,-5 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000022724 Riox2 ENSMUST00000138324 ENSMUSP00000121743 TRANSLATION protein_coding stop - 3 73.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000043811 Rtn4r ENSMUST00000059589 ENSMUSP00000062924 TRANSLATION protein_coding - CCDS37279.1 1 473.0 0.0 1.0 8.2 98.2 0.0 1,-4 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000022641 Bbx ENSMUST00000130210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022641 Bbx ENSMUST00000066037 ENSMUSP00000066384 TRANSLATION protein_coding - - 1 829.0 0.0 0.732 0.0 121.3 0.0 -4,-5 0.0073 9 2.538 MINOR ENSMUSG00000022641 Bbx ENSMUST00000089404 ENSMUSP00000086826 TRANSLATION protein_coding - CCDS84241.1 1 887.0 0.0 1.732 2.3 231.2 0.0 -4,-5 0.6142 10 12.448 MINOR ENSMUSG00000022641 Bbx ENSMUST00000131695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022641 Bbx ENSMUST00000138166 ENSMUSP00000119238 TRANSLATION protein_coding - CCDS37354.1 1 907.0 0.0 1.732 6.8 231.0 0.0 -4,-5 1.0 10 13.988 PRINCIPAL:1 ENSMUSG00000022641 Bbx ENSMUST00000114488 ENSMUSP00000110132 TRANSLATION protein_coding - CCDS37354.1 1 907.0 0.0 1.732 6.8 231.0 0.0 -4,-5 1.0 10 13.988 PRINCIPAL:1 ENSMUSG00000022641 Bbx ENSMUST00000142818 - NO_TRANSLATION retained_intron ENSMUSG00000022641 Bbx ENSMUST00000114477 - NO_TRANSLATION retained_intron ENSMUSG00000022641 Bbx ENSMUST00000089399 ENSMUSP00000086821 TRANSLATION protein_coding stop - 1 750.0 0.0 1.732 0.0 231.2 0.0 -4,-5 0.0716 8 -2.0 MINOR ENSMUSG00000022651 Retnlg ENSMUST00000065666 ENSMUSP00000070238 TRANSLATION protein_coding - CCDS49865.1 1 117.0 0.0 1.45 0.0 120.7 0.0 0,-3 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000075002 Ftdc1 ENSMUST00000099663 ENSMUSP00000097255 TRANSLATION protein_coding - CCDS28231.1 1 176.0 0.0 3.6 0.0 51.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000022783 Spag6l ENSMUST00000132033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022783 Spag6l ENSMUST00000023468 ENSMUSP00000023468 TRANSLATION protein_coding - CCDS27988.1 1 507.0 0.0 10.08 31.2 131.2 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000022783 Spag6l ENSMUST00000125017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022783 Spag6l ENSMUST00000154624 - NO_TRANSLATION retained_intron ENSMUSG00000022783 Spag6l ENSMUST00000141835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022783 Spag6l ENSMUST00000147539 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022783 Spag6l ENSMUST00000151132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002844 Adprh ENSMUST00000002923 ENSMUSP00000002923 TRANSLATION protein_coding - CCDS28167.1 1 362.0 7.0 3.0 6.0 186.0 0.0 -4,-7 1.0 12 20.0 PRINCIPAL:1 ENSMUSG00000002844 Adprh ENSMUST00000232145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022748 Cmss1 ENSMUST00000231282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022748 Cmss1 ENSMUST00000114371 ENSMUSP00000110011 TRANSLATION protein_coding - CCDS37365.1 1 276.0 0.0 6.0 11.0 25.2 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000022748 Cmss1 ENSMUST00000232413 ENSMUSP00000156058 TRANSLATION protein_coding - - - 67.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - 0.0 MINOR ENSMUSG00000012114 Med15 ENSMUST00000231413 ENSMUSP00000156107 TRANSLATION protein_coding stop - - 77.0 0.0 1.58 0.0 77.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000012114 Med15 ENSMUST00000232431 ENSMUSP00000156371 TRANSLATION protein_coding stop - - 87.0 0.0 1.58 0.0 84.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000012114 Med15 ENSMUST00000232401 - NO_TRANSLATION retained_intron ENSMUSG00000012114 Med15 ENSMUST00000012259 ENSMUSP00000012259 TRANSLATION protein_coding - CCDS37274.1 1 789.0 0.0 6.83 0.0 609.0 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000012114 Med15 ENSMUST00000080936 ENSMUSP00000079737 TRANSLATION protein_coding - CCDS37273.1 1 749.0 0.0 6.83 0.0 559.8 0.0 -4,-5 0.2927 9 9.048 MINOR ENSMUSG00000012114 Med15 ENSMUST00000232005 - NO_TRANSLATION retained_intron ENSMUSG00000012114 Med15 ENSMUST00000232645 ENSMUSP00000156242 TRANSLATION protein_coding - - - 639.0 0.0 6.08 0.0 529.7 0.0 -4,-5 0.0096 8 5.742 MINOR ENSMUSG00000012114 Med15 ENSMUST00000232163 ENSMUSP00000155915 TRANSLATION protein_coding start/stop - - 218.0 0.0 2.0 0.0 71.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000012114 Med15 ENSMUST00000231674 ENSMUSP00000156305 TRANSLATION nonsense_mediated_decay - - - 88.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000012114 Med15 ENSMUST00000232012 - NO_TRANSLATION retained_intron ENSMUSG00000012114 Med15 ENSMUST00000232667 - NO_TRANSLATION retained_intron ENSMUSG00000012114 Med15 ENSMUST00000231494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012114 Med15 ENSMUST00000232236 ENSMUSP00000156291 TRANSLATION protein_coding - - - 766.0 0.0 5.33 0.0 531.6 0.0 -4,-5 0.0453 9 4.356 MINOR ENSMUSG00000012114 Med15 ENSMUST00000231754 - NO_TRANSLATION retained_intron ENSMUSG00000012114 Med15 ENSMUST00000231231 - NO_TRANSLATION retained_intron ENSMUSG00000012114 Med15 ENSMUST00000232202 ENSMUSP00000156139 TRANSLATION protein_coding start/stop - - 354.0 0.0 2.0 0.0 48.8 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000012114 Med15 ENSMUST00000232312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012114 Med15 ENSMUST00000231480 - NO_TRANSLATION retained_intron ENSMUSG00000022857 Tmprss15 ENSMUST00000023566 ENSMUSP00000023566 TRANSLATION protein_coding - CCDS28280.1 1 1069.0 5.0 5.3 0.0 652.1 1.0 -4,-7 1.0 9 13.0 PRINCIPAL:2 ENSMUSG00000022857 Tmprss15 ENSMUST00000060402 ENSMUSP00000052034 TRANSLATION protein_coding - CCDS37380.1 2 1054.0 5.0 5.3 0.3 652.1 1.0 -4,-7 0.6351 9 13.0 ALTERNATIVE:2 ENSMUSG00000058240 Cryzl1 ENSMUST00000124282 ENSMUSP00000115686 TRANSLATION protein_coding - - 5 300.0 0.0 8.5 2.3 0.0 0.0 -4,-5 0.0916 10 3.168 MINOR ENSMUSG00000058240 Cryzl1 ENSMUST00000122254 ENSMUSP00000112734 TRANSLATION protein_coding - - 3 191.0 0.0 4.25 0.0 0.0 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000058240 Cryzl1 ENSMUST00000141664 ENSMUSP00000156182 TRANSLATION protein_coding start - 2 142.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000058240 Cryzl1 ENSMUST00000123751 ENSMUSP00000156339 TRANSLATION protein_coding - - 2 28.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000058240 Cryzl1 ENSMUST00000140199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058240 Cryzl1 ENSMUST00000073466 ENSMUSP00000073171 TRANSLATION protein_coding - CCDS37401.1 1 348.0 0.0 10.0 32.1 0.0 0.0 -4,-5 1.0 12 10.0 PRINCIPAL:1 ENSMUSG00000058240 Cryzl1 ENSMUST00000144877 ENSMUSP00000156317 TRANSLATION protein_coding start - 2 84.0 0.0 2.0 0.0 35.5 0.0 -4,-2 0.0117 1 -2.0 MINOR ENSMUSG00000058240 Cryzl1 ENSMUST00000128975 - NO_TRANSLATION retained_intron ENSMUSG00000058240 Cryzl1 ENSMUST00000144472 ENSMUSP00000116833 TRANSLATION protein_coding start - 5 220.0 0.0 5.25 0.0 0.0 0.0 -4,-5 0.0281 5 -2.0 MINOR ENSMUSG00000058240 Cryzl1 ENSMUST00000114023 ENSMUSP00000109656 TRANSLATION protein_coding - - 1 231.0 0.0 6.5 0.0 32.1 0.0 -4,-5 0.0083 8 5.424 MINOR ENSMUSG00000058240 Cryzl1 ENSMUST00000117644 ENSMUSP00000113227 TRANSLATION protein_coding - CCDS57039.1 1 333.0 0.0 9.5 0.7 0.0 0.0 -4,-5 0.1749 10 4.998 MINOR ENSMUSG00000058240 Cryzl1 ENSMUST00000231499 ENSMUSP00000156258 TRANSLATION protein_coding stop - - 182.0 0.0 5.25 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000039473 Ubn1 ENSMUST00000229570 ENSMUSP00000155604 TRANSLATION protein_coding start/stop - - 231.0 0.0 0.0 0.0 70.2 0.0 -4,-5 0.0001 1 -2.0 MINOR ENSMUSG00000039473 Ubn1 ENSMUST00000230703 ENSMUSP00000155223 TRANSLATION protein_coding - CCDS27931.1 - 1135.0 0.0 1.0 10.3 331.1 0.0 -4,-7 1.0 12 11.0 PRINCIPAL:2 ENSMUSG00000039473 Ubn1 ENSMUST00000229060 - NO_TRANSLATION retained_intron ENSMUSG00000039473 Ubn1 ENSMUST00000052449 ENSMUSP00000061843 TRANSLATION protein_coding - CCDS27931.1 1 1135.0 0.0 1.0 10.3 331.1 0.0 -4,-7 1.0 12 11.0 PRINCIPAL:2 ENSMUSG00000039473 Ubn1 ENSMUST00000229386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039473 Ubn1 ENSMUST00000229126 ENSMUSP00000155263 TRANSLATION protein_coding - - - 1105.0 0.0 1.0 7.2 331.1 0.0 -4,-7 0.6866 12 10.001 ALTERNATIVE:1 ENSMUSG00000039473 Ubn1 ENSMUST00000229355 - NO_TRANSLATION retained_intron ENSMUSG00000047953 Gp5 ENSMUST00000061190 ENSMUSP00000051895 TRANSLATION protein_coding - CCDS28100.1 1 567.0 0.0 1.0 0.4 171.8 0.0 3,-3 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000022521 Crebbp ENSMUST00000191387 - NO_TRANSLATION retained_intron ENSMUSG00000022521 Crebbp ENSMUST00000206464 ENSMUSP00000145798 TRANSLATION protein_coding start/stop - 5 172.0 0.0 3.565 0.0 76.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022521 Crebbp ENSMUST00000023165 ENSMUSP00000023165 TRANSLATION protein_coding - CCDS27915.1 1 2441.0 12.0 18.08 2.5 796.5 0.0 -4,-5 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000022521 Crebbp ENSMUST00000205945 - NO_TRANSLATION retained_intron ENSMUSG00000022521 Crebbp ENSMUST00000205344 ENSMUSP00000146029 TRANSLATION protein_coding start/stop - 1 1107.0 12.0 13.02 0.0 476.7 0.0 -4,-6 0.0127 6 -2.0 MINOR ENSMUSG00000022521 Crebbp ENSMUST00000206098 ENSMUSP00000145825 TRANSLATION protein_coding start/stop - 5 127.0 1.0 2.75 0.0 43.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022521 Crebbp ENSMUST00000205765 ENSMUSP00000146330 TRANSLATION protein_coding - - 5 2403.0 12.0 17.08 1.4 768.8 0.0 -4,-5 0.3278 15 14.607 MINOR ENSMUSG00000022521 Crebbp ENSMUST00000205685 ENSMUSP00000146076 TRANSLATION protein_coding start/stop - 5 247.0 0.0 2.6 0.0 136.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022601 Zbtb11 ENSMUST00000050248 ENSMUSP00000056923 TRANSLATION protein_coding - CCDS49874.1 5 1050.0 43.0 3.698 9.6 235.8 0.0 -4,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000022601 Zbtb11 ENSMUST00000183440 - NO_TRANSLATION retained_intron ENSMUSG00000022601 Zbtb11 ENSMUST00000184618 - NO_TRANSLATION retained_intron ENSMUSG00000116673 A630089N07Rik ENSMUST00000232533 ENSMUSP00000155945 TRANSLATION protein_coding - - - 118.0 3.0 3.448 0.3 76.9 0.0 -4,-5 0.4741 1 6.0 PRINCIPAL:2 ENSMUSG00000116673 A630089N07Rik ENSMUST00000232376 ENSMUSP00000156146 TRANSLATION protein_coding - - - 67.0 0.0 2.25 0.4 76.9 0.0 -4,-5 0.0 - 3.606 MINOR ENSMUSG00000116673 A630089N07Rik ENSMUST00000231268 ENSMUSP00000156011 TRANSLATION protein_coding - - - 117.0 3.0 3.316 0.0 76.9 0.0 -4,-5 0.0893 1 5.736 ALTERNATIVE:2 ENSMUSG00000116673 A630089N07Rik ENSMUST00000232614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000116673 A630089N07Rik ENSMUST00000232346 ENSMUSP00000156036 TRANSLATION protein_coding - - - 68.0 0.0 2.25 0.0 76.9 0.0 -4,-5 0.0 - 3.606 MINOR ENSMUSG00000116673 A630089N07Rik ENSMUST00000231741 ENSMUSP00000156068 TRANSLATION protein_coding stop - - 439.0 51.0 3.25 0.0 252.4 0.0 -4,-5 0.1443 1 -2.0 MINOR ENSMUSG00000048087 Ahcyl ENSMUST00000059524 ENSMUSP00000127198 TRANSLATION protein_coding - CCDS84240.1 - 432.0 43.0 1.0 33.7 528.6 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000022831 Hcls1 ENSMUST00000164050 ENSMUSP00000127186 TRANSLATION nonsense_mediated_decay - - 5 144.0 0.0 0.0 0.0 99.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000022831 Hcls1 ENSMUST00000163755 - NO_TRANSLATION retained_intron ENSMUSG00000022831 Hcls1 ENSMUST00000023531 ENSMUSP00000023531 TRANSLATION protein_coding - CCDS37336.1 1 486.0 0.0 1.75 0.9 306.7 0.0 -4,-5 1.0 23 12.0 PRINCIPAL:1 ENSMUSG00000022972 Cfap298 ENSMUST00000142340 ENSMUSP00000120107 TRANSLATION protein_coding stop - 5 150.0 0.0 4.08 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022972 Cfap298 ENSMUST00000231711 - NO_TRANSLATION retained_intron ENSMUSG00000022972 Cfap298 ENSMUST00000131583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022972 Cfap298 ENSMUST00000149833 ENSMUSP00000123417 TRANSLATION protein_coding stop - 5 198.0 0.0 5.33 0.0 35.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022972 Cfap298 ENSMUST00000023694 ENSMUSP00000023694 TRANSLATION protein_coding - CCDS28321.1 1 290.0 0.0 8.16 31.8 150.0 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000022972 Cfap298 ENSMUST00000125519 ENSMUSP00000117691 TRANSLATION nonsense_mediated_decay - - 5 145.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022972 Cfap298 ENSMUST00000129345 ENSMUSP00000122163 TRANSLATION protein_coding start - 5 156.0 0.0 4.66 0.0 51.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041134 Cyyr1 ENSMUST00000114174 ENSMUSP00000109811 TRANSLATION protein_coding - CCDS28286.1 1 165.0 0.0 0.8 0.4 267.1 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000041134 Cyyr1 ENSMUST00000162621 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041134 Cyyr1 ENSMUST00000175700 ENSMUSP00000135363 TRANSLATION protein_coding - - 1 68.0 0.0 0.0 0.0 81.1 0.0 4,-1 0.0021 - 0.0 MINOR ENSMUSG00000041134 Cyyr1 ENSMUST00000163020 - NO_TRANSLATION retained_intron ENSMUSG00000115293 Eef1ece2 ENSMUST00000079600 ENSMUSP00000078550 TRANSLATION protein_coding,RT - CCDS49794.1 1 881.0 3.0 17.65 3.5 681.3 1.0 -4,-6 0.6832 - -2.0 ALTERNATIVE:2 ENSMUSG00000115293 Eef1ece2 ENSMUST00000120394 ENSMUSP00000113475 TRANSLATION protein_coding,RT - CCDS49793.1 1 910.0 3.0 17.65 7.3 681.3 1.0 -4,-6 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000000157 Itgb2l ENSMUST00000000161 ENSMUSP00000000161 TRANSLATION protein_coding - CCDS28358.1 1 738.0 5.0 12.15 0.0 265.3 2.0 3,-1 0.5915 8 13.0 ALTERNATIVE:2 ENSMUSG00000000157 Itgb2l ENSMUST00000131777 - NO_TRANSLATION retained_intron ENSMUSG00000000157 Itgb2l ENSMUST00000113773 ENSMUSP00000109403 TRANSLATION protein_coding - - 1 795.0 5.0 12.15 0.0 265.3 2.0 3,-1 0.892 8 13.0 PRINCIPAL:2 ENSMUSG00000000157 Itgb2l ENSMUST00000233827 - NO_TRANSLATION retained_intron ENSMUSG00000000157 Itgb2l ENSMUST00000131567 ENSMUSP00000114497 TRANSLATION nonsense_mediated_decay - - 1 540.0 5.0 9.75 0.0 265.3 0.0 3,-1 0.1457 5 -2.0 MINOR ENSMUSG00000093575 Gm20695 ENSMUST00000146935 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093575 Gm20695 ENSMUST00000176233 ENSMUSP00000135826 TRANSLATION protein_coding,RT stop - 5 282.0 9.0 3.04 0.0 244.5 0.0 -4,-5 0.7599 - -2.0 PRINCIPAL:1 ENSMUSG00000006134 Crkl ENSMUST00000231228 ENSMUSP00000155860 TRANSLATION protein_coding stop - - 148.0 0.0 2.0 0.0 79.5 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000006134 Crkl ENSMUST00000231629 ENSMUSP00000156063 TRANSLATION protein_coding - - - 108.0 0.0 1.0 0.0 79.5 0.0 -4,-2 0.0 4 0.0 MINOR ENSMUSG00000006134 Crkl ENSMUST00000006293 ENSMUSP00000006293 TRANSLATION protein_coding - CCDS28002.1 1 303.0 0.0 4.0 25.7 183.5 0.0 -4,-2 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000022781 Pak2 ENSMUST00000023467 ENSMUSP00000023467 TRANSLATION protein_coding - CCDS28112.1 1 524.0 18.0 7.4 24.9 331.6 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000022781 Pak2 ENSMUST00000125019 - NO_TRANSLATION retained_intron ENSMUSG00000091212 Krtap11-1 ENSMUST00000171542 ENSMUSP00000129948 TRANSLATION protein_coding - CCDS49903.1 - 183.0 0.0 0.0 0.1 94.9 0.0 -4,-1 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000055811 Cldn17 ENSMUST00000069549 ENSMUSP00000066427 TRANSLATION protein_coding - CCDS28295.1 - 224.0 0.0 0.6 12.5 93.2 0.0 -1,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000008976 Gabpa ENSMUST00000139101 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008976 Gabpa ENSMUST00000126031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008976 Gabpa ENSMUST00000009120 ENSMUSP00000009120 TRANSLATION protein_coding - CCDS28284.1 1 454.0 0.0 5.35 24.9 317.7 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000008976 Gabpa ENSMUST00000114184 ENSMUSP00000109822 TRANSLATION protein_coding - CCDS28284.1 1 454.0 0.0 5.35 24.9 317.7 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000008976 Gabpa ENSMUST00000148035 - NO_TRANSLATION retained_intron ENSMUSG00000022827 Rabl3 ENSMUST00000128036 - NO_TRANSLATION retained_intron ENSMUSG00000022827 Rabl3 ENSMUST00000130028 ENSMUSP00000122441 TRANSLATION nonsense_mediated_decay - - 1 129.0 16.0 3.5 0.0 59.1 0.0 -4,-5 0.0065 3 -2.0 MINOR ENSMUSG00000022827 Rabl3 ENSMUST00000140799 - NO_TRANSLATION retained_intron ENSMUSG00000022827 Rabl3 ENSMUST00000023524 ENSMUSP00000023524 TRANSLATION protein_coding - CCDS37338.1 1 236.0 20.0 6.25 34.9 59.1 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000071471 Krtap26-1 ENSMUST00000095934 ENSMUSP00000093626 TRANSLATION protein_coding - CCDS28298.1 - 215.0 0.0 0.0 1.6 210.1 0.0 -4,-1 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000022901 Cd86 ENSMUST00000089620 ENSMUSP00000087047 TRANSLATION protein_coding - CCDS28155.1 1 309.0 0.0 1.65 0.0 27.8 0.0 1,-4 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000022901 Cd86 ENSMUST00000135280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022901 Cd86 ENSMUST00000154485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022901 Cd86 ENSMUST00000145506 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022711 Pmm2 ENSMUST00000023396 ENSMUSP00000023396 TRANSLATION protein_coding - CCDS27941.1 1 242.0 24.0 7.0 0.0 372.9 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000022711 Pmm2 ENSMUST00000130885 - NO_TRANSLATION retained_intron ENSMUSG00000022711 Pmm2 ENSMUST00000143174 - NO_TRANSLATION retained_intron ENSMUSG00000022711 Pmm2 ENSMUST00000131385 - NO_TRANSLATION retained_intron ENSMUSG00000022711 Pmm2 ENSMUST00000230828 ENSMUSP00000155554 TRANSLATION protein_coding - CCDS27941.1 - 242.0 24.0 7.0 0.0 372.9 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000022711 Pmm2 ENSMUST00000134975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022711 Pmm2 ENSMUST00000142935 - NO_TRANSLATION retained_intron ENSMUSG00000050685 Ccdc54 ENSMUST00000062439 ENSMUSP00000049864 TRANSLATION protein_coding - CCDS28214.1 - 329.0 0.0 0.4 9.1 0.0 0.0 -4,0 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000051483 Cbr1 ENSMUST00000039659 ENSMUSP00000049394 TRANSLATION protein_coding - CCDS28341.1 1 277.0 28.0 3.0 31.9 96.8 0.0 -4,-2 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000051483 Cbr1 ENSMUST00000231450 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051483 Cbr1 ENSMUST00000232551 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051483 Cbr1 ENSMUST00000231762 ENSMUSP00000155872 TRANSLATION protein_coding - - - 134.0 17.0 2.0 0.0 82.2 0.0 -4,-2 0.0003 6 9.096 MINOR ENSMUSG00000035699 Slc51a ENSMUST00000231690 ENSMUSP00000155959 TRANSLATION nonsense_mediated_decay - - - 178.0 0.0 1.4 0.0 0.0 1.0 -4,-6 0.0015 - -2.0 MINOR ENSMUSG00000035699 Slc51a ENSMUST00000042042 ENSMUSP00000046286 TRANSLATION protein_coding - CCDS28121.1 1 340.0 0.0 7.23 11.4 121.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035699 Slc51a ENSMUST00000232418 - NO_TRANSLATION retained_intron ENSMUSG00000108763 Btnl12 ENSMUST00000205931 ENSMUSP00000146040 TRANSLATION protein_coding - - 5 299.0 0.0 0.932 0.0 32.8 0.0 -3,-5 0.7768 - 12.0 PRINCIPAL:1 ENSMUSG00000108763 Btnl12 ENSMUST00000205465 - NO_TRANSLATION retained_intron ENSMUSG00000022661 Cd200 ENSMUST00000172091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022661 Cd200 ENSMUST00000172297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022661 Cd200 ENSMUST00000163230 ENSMUSP00000130518 TRANSLATION protein_coding - CCDS49860.1 1 278.0 0.0 2.33 1.4 102.2 1.0 0,-3 0.5238 5 12.122 MINOR ENSMUSG00000022661 Cd200 ENSMUST00000166630 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022661 Cd200 ENSMUST00000167355 ENSMUSP00000132506 TRANSLATION nonsense_mediated_decay - - 5 129.0 0.0 1.198 0.0 66.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000022661 Cd200 ENSMUST00000167552 - NO_TRANSLATION retained_intron ENSMUSG00000022661 Cd200 ENSMUST00000165910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022661 Cd200 ENSMUST00000171328 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022661 Cd200 ENSMUST00000023341 ENSMUSP00000023341 TRANSLATION protein_coding - - 5 269.0 0.0 2.33 7.6 102.2 1.0 0,-3 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000022661 Cd200 ENSMUST00000171855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022661 Cd200 ENSMUST00000166512 ENSMUSP00000129541 TRANSLATION nonsense_mediated_decay - - 1 150.0 0.0 1.198 0.0 66.0 0.0 0,-3 0.001 4 -2.0 MINOR ENSMUSG00000022514 Il1rap ENSMUST00000166294 ENSMUSP00000128100 TRANSLATION protein_coding - CCDS49814.1 1 640.0 0.0 8.5 2.8 165.7 1.0 0,-3 0.243 12 10.152 MINOR ENSMUSG00000022514 Il1rap ENSMUST00000174171 ENSMUSP00000133904 TRANSLATION nonsense_mediated_decay - - 5 346.0 0.0 4.75 0.0 30.9 0.0 0,-3 0.0012 9 -2.0 MINOR ENSMUSG00000022514 Il1rap ENSMUST00000023156 ENSMUSP00000023156 TRANSLATION protein_coding - CCDS28089.1 1 570.0 0.0 8.75 8.7 199.9 1.0 0,-3 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000022514 Il1rap ENSMUST00000173136 ENSMUSP00000133294 TRANSLATION nonsense_mediated_decay start - 1 166.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000022514 Il1rap ENSMUST00000096129 ENSMUSP00000093843 TRANSLATION protein_coding - CCDS49815.1 1 685.0 0.0 8.5 8.0 165.7 1.0 0,-3 0.6458 12 12.177 MINOR ENSMUSG00000022514 Il1rap ENSMUST00000174644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022514 Il1rap ENSMUST00000174202 ENSMUSP00000134202 TRANSLATION protein_coding - CCDS57023.1 1 360.0 0.0 5.75 2.1 69.0 0.0 0,-3 0.0734 9 0.429 MINOR ENSMUSG00000068535 Or2aj4 ENSMUST00000090062 ENSMUSP00000087516 TRANSLATION protein_coding - CCDS28037.1 - 313.0 0.0 1.0 10.5 154.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068535 Or2aj4 ENSMUST00000215040 ENSMUSP00000149087 TRANSLATION protein_coding - CCDS28037.1 5 313.0 0.0 1.0 10.5 154.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068535 Or2aj4 ENSMUST00000215476 ENSMUSP00000150917 TRANSLATION protein_coding - CCDS28037.1 5 313.0 0.0 1.0 10.5 154.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068535 Or2aj4 ENSMUST00000216070 ENSMUSP00000150528 TRANSLATION protein_coding - CCDS28037.1 5 313.0 0.0 1.0 10.5 154.4 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000098274 Rpl24 ENSMUST00000023269 ENSMUSP00000023269 TRANSLATION protein_coding - CCDS28218.1 1 157.0 0.0 2.75 34.9 116.3 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000098274 Rpl24 ENSMUST00000137811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000098274 Rpl24 ENSMUST00000128581 - NO_TRANSLATION retained_intron ENSMUSG00000098274 Rpl24 ENSMUST00000126419 - NO_TRANSLATION retained_intron ENSMUSG00000000326 Comt ENSMUST00000147720 ENSMUSP00000121810 TRANSLATION protein_coding stop - 2 171.0 16.0 2.5 0.0 0.0 0.0 3,-2 0.0962 6 -2.0 MINOR ENSMUSG00000000326 Comt ENSMUST00000000335 ENSMUSP00000000335 TRANSLATION protein_coding - CCDS28021.1 1 265.0 23.0 4.25 0.0 0.0 0.0 3,-2 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000000326 Comt ENSMUST00000115609 ENSMUSP00000111272 TRANSLATION protein_coding - CCDS28021.1 1 265.0 23.0 4.25 0.0 0.0 0.0 3,-2 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000000326 Comt ENSMUST00000165430 ENSMUSP00000130077 TRANSLATION protein_coding - CCDS28021.1 5 265.0 23.0 4.25 0.0 0.0 0.0 3,-2 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000022534 Mefv ENSMUST00000100222 ENSMUSP00000097795 TRANSLATION protein_coding - CCDS49745.1 1 808.0 13.0 3.98 0.0 116.2 0.0 -4,-5 0.267 - 14.0 ALTERNATIVE:2 ENSMUSG00000022534 Mefv ENSMUST00000229725 ENSMUSP00000154892 TRANSLATION protein_coding - - - 740.0 13.0 3.98 0.0 116.2 0.0 -4,-5 0.0983 - 14.0 ALTERNATIVE:2 ENSMUSG00000022534 Mefv ENSMUST00000023180 ENSMUSP00000023180 TRANSLATION protein_coding - CCDS27907.1 1 767.0 13.0 3.98 0.0 116.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000022860 Chodl ENSMUST00000114216 ENSMUSP00000109854 TRANSLATION protein_coding - - 1 246.0 5.0 1.05 0.0 58.4 3.0 4,-2 0.0725 - 10.328 MINOR ENSMUSG00000022860 Chodl ENSMUST00000069148 ENSMUSP00000063961 TRANSLATION protein_coding - - 1 292.0 5.0 1.182 0.0 58.4 3.0 4,-2 0.1342 - 11.0 MINOR ENSMUSG00000022860 Chodl ENSMUST00000232415 ENSMUSP00000156041 TRANSLATION protein_coding - - - 268.0 5.0 1.182 10.9 58.4 3.0 4,-2 0.8219 1 14.0 ALTERNATIVE:1 ENSMUSG00000022860 Chodl ENSMUST00000023568 ENSMUSP00000023568 TRANSLATION protein_coding - CCDS28279.1 1 273.0 5.0 1.182 10.9 58.4 3.0 4,-2 1.0 1 14.0 PRINCIPAL:4 ENSMUSG00000022860 Chodl ENSMUST00000231883 - NO_TRANSLATION retained_intron ENSMUSG00000022500 Litaf ENSMUST00000230709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022500 Litaf ENSMUST00000162323 ENSMUSP00000123948 TRANSLATION protein_coding stop - 3 97.0 0.0 0.6 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022500 Litaf ENSMUST00000023143 ENSMUSP00000023143 TRANSLATION protein_coding - CCDS27958.1 1 161.0 3.0 2.35 11.1 90.0 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000022500 Litaf ENSMUST00000117360 ENSMUSP00000112667 TRANSLATION protein_coding - CCDS27958.1 3 161.0 3.0 2.35 11.1 90.0 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000022500 Litaf ENSMUST00000140170 - NO_TRANSLATION retained_intron ENSMUSG00000043301 Kcnj6 ENSMUST00000232403 - NO_TRANSLATION retained_intron ENSMUSG00000043301 Kcnj6 ENSMUST00000232562 ENSMUSP00000156014 TRANSLATION protein_coding - - - 407.0 0.0 2.0 13.9 477.5 2.0 -4,-5 0.9037 4 12.0 ALTERNATIVE:1 ENSMUSG00000043301 Kcnj6 ENSMUST00000231744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043301 Kcnj6 ENSMUST00000232128 - NO_TRANSLATION retained_intron ENSMUSG00000043301 Kcnj6 ENSMUST00000095873 ENSMUSP00000093558 TRANSLATION protein_coding - CCDS37408.1 1 414.0 0.0 2.0 0.4 477.5 2.0 -4,-5 0.3806 4 8.0 MINOR ENSMUSG00000043301 Kcnj6 ENSMUST00000099508 ENSMUSP00000097108 TRANSLATION protein_coding - CCDS37409.1 1 425.0 0.0 2.0 13.7 477.5 2.0 -4,-5 1.0 4 11.936 PRINCIPAL:4 ENSMUSG00000043301 Kcnj6 ENSMUST00000165538 ENSMUSP00000130321 TRANSLATION protein_coding - CCDS49921.1 1 302.0 0.0 1.0 3.0 395.3 2.0 -4,-5 0.1081 2 3.62 MINOR ENSMUSG00000022938 Fam3b ENSMUST00000231641 ENSMUSP00000156165 TRANSLATION protein_coding - - - 107.0 0.0 2.5 0.0 65.1 0.0 -4,-5 0.0 4 3.936 MINOR ENSMUSG00000022938 Fam3b ENSMUST00000231999 ENSMUSP00000156261 TRANSLATION protein_coding - - - 187.0 0.0 5.08 4.4 99.2 0.0 -4,-6 0.1694 6 11.05 MINOR ENSMUSG00000022938 Fam3b ENSMUST00000125475 - NO_TRANSLATION retained_intron ENSMUSG00000022938 Fam3b ENSMUST00000049721 ENSMUSP00000062006 TRANSLATION protein_coding - CCDS37416.1 1 235.0 0.0 6.08 14.0 99.2 0.0 1,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000022938 Fam3b ENSMUST00000231414 ENSMUSP00000155878 TRANSLATION protein_coding - - - 246.0 0.0 5.75 0.3 99.2 0.0 -2,0 0.0837 6 11.34 MINOR ENSMUSG00000022938 Fam3b ENSMUST00000232018 ENSMUSP00000156087 TRANSLATION protein_coding - - - 107.0 0.0 2.5 0.0 65.1 0.0 -4,-5 0.0 4 3.936 MINOR ENSMUSG00000051003 Or1f19 ENSMUST00000061541 ENSMUSP00000058956 TRANSLATION protein_coding - CCDS27906.1 - 313.0 0.0 1.0 10.4 201.4 4.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051003 Or1f19 ENSMUST00000216259 ENSMUSP00000150825 TRANSLATION protein_coding - CCDS27906.1 5 313.0 0.0 1.0 10.4 201.4 4.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034243 Golgb1 ENSMUST00000023534 ENSMUSP00000023534 TRANSLATION protein_coding start - - 165.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.04 - -2.0 MINOR ENSMUSG00000034243 Golgb1 ENSMUST00000140266 - NO_TRANSLATION retained_intron ENSMUSG00000034243 Golgb1 ENSMUST00000152864 - NO_TRANSLATION retained_intron ENSMUSG00000034243 Golgb1 ENSMUST00000114812 ENSMUSP00000110460 TRANSLATION protein_coding - - 5 3197.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.7488 111 0.0 PRINCIPAL:3 ENSMUSG00000034243 Golgb1 ENSMUST00000039855 ENSMUSP00000045239 TRANSLATION protein_coding - CCDS49844.1 5 3238.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6555 109 0.0 ALTERNATIVE:2 ENSMUSG00000034243 Golgb1 ENSMUST00000135800 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034243 Golgb1 ENSMUST00000134616 ENSMUSP00000116503 TRANSLATION protein_coding stop - 1 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0266 1 -2.0 MINOR ENSMUSG00000005615 Pcyt1a ENSMUST00000231920 - NO_TRANSLATION retained_intron ENSMUSG00000005615 Pcyt1a ENSMUST00000079791 ENSMUSP00000078721 TRANSLATION protein_coding - CCDS28120.1 1 367.0 0.0 7.13 26.4 109.9 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000005615 Pcyt1a ENSMUST00000115140 ENSMUSP00000110793 TRANSLATION protein_coding - CCDS28120.1 1 367.0 0.0 7.13 26.4 109.9 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000005615 Pcyt1a ENSMUST00000123199 - NO_TRANSLATION retained_intron ENSMUSG00000005615 Pcyt1a ENSMUST00000115137 ENSMUSP00000110790 TRANSLATION protein_coding - - 5 265.0 0.0 4.08 0.0 95.7 0.0 -4,-6 0.0028 6 5.148 MINOR ENSMUSG00000005615 Pcyt1a ENSMUST00000141421 - NO_TRANSLATION retained_intron ENSMUSG00000005615 Pcyt1a ENSMUST00000141772 - NO_TRANSLATION retained_intron ENSMUSG00000005615 Pcyt1a ENSMUST00000104893 ENSMUSP00000130056 TRANSLATION protein_coding - CCDS28120.1 5 367.0 0.0 7.13 26.4 109.9 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000116925 Gm49776 ENSMUST00000232144 ENSMUSP00000155887 TRANSLATION nonsense_mediated_decay,RT start - - 108.0 0.0 2.0 0.0 0.0 0.0 -4,-1 0.682 - -2.0 PRINCIPAL:1 ENSMUSG00000022982 Sod1 ENSMUST00000232505 - NO_TRANSLATION retained_intron ENSMUSG00000022982 Sod1 ENSMUST00000023707 ENSMUSP00000023707 TRANSLATION protein_coding - CCDS37395.1 1 154.0 8.0 4.5 21.9 172.1 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000075254 Heg1 ENSMUST00000154863 - NO_TRANSLATION retained_intron ENSMUSG00000075254 Heg1 ENSMUST00000152832 - NO_TRANSLATION retained_intron ENSMUSG00000075254 Heg1 ENSMUST00000146518 - NO_TRANSLATION retained_intron ENSMUSG00000075254 Heg1 ENSMUST00000128105 ENSMUSP00000155963 TRANSLATION protein_coding - - 1 138.0 0.0 0.75 0.0 0.0 0.0 -1,-5 0.0 5 0.0 MINOR ENSMUSG00000075254 Heg1 ENSMUST00000232568 ENSMUSP00000155944 TRANSLATION protein_coding - - - 1313.0 7.0 4.422 0.0 62.2 0.0 3,-2 0.5857 17 14.0 ALTERNATIVE:2 ENSMUSG00000075254 Heg1 ENSMUST00000132797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075254 Heg1 ENSMUST00000126532 ENSMUSP00000119790 TRANSLATION protein_coding - - 5 1337.0 7.0 4.422 0.0 62.2 0.0 3,-2 1.0 16 14.0 PRINCIPAL:2 ENSMUSG00000075254 Heg1 ENSMUST00000152782 ENSMUSP00000123686 TRANSLATION protein_coding - - 5 1082.0 7.0 4.422 0.0 62.2 0.0 3,-2 0.4353 14 14.0 ALTERNATIVE:2 ENSMUSG00000052013 Btla ENSMUST00000063654 ENSMUSP00000067877 TRANSLATION protein_coding - CCDS28195.1 1 306.0 0.0 1.4 0.4 0.0 1.0 -2,-4 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000052013 Btla ENSMUST00000231703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052013 Btla ENSMUST00000102802 ENSMUSP00000099866 TRANSLATION protein_coding - CCDS28196.1 1 305.0 0.0 1.4 0.4 0.0 1.0 -2,-4 0.6564 1 6.0 ALTERNATIVE:2 ENSMUSG00000068074 Gm10228 ENSMUST00000089105 ENSMUSP00000086506 TRANSLATION protein_coding - CCDS57037.1 - 78.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000039738 Slx4 ENSMUST00000040790 ENSMUSP00000038871 TRANSLATION protein_coding - CCDS37240.1 1 1565.0 8.0 3.8 0.0 104.4 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000039738 Slx4 ENSMUST00000165830 ENSMUSP00000126047 TRANSLATION protein_coding start/stop - 5 288.0 8.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 3 -2.0 MINOR ENSMUSG00000039738 Slx4 ENSMUST00000171658 ENSMUSP00000129144 TRANSLATION protein_coding stop - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039738 Slx4 ENSMUST00000146569 ENSMUSP00000126423 TRANSLATION nonsense_mediated_decay start - 1 105.0 0.0 2.0 0.0 45.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039738 Slx4 ENSMUST00000156542 ENSMUSP00000130007 TRANSLATION nonsense_mediated_decay start - 1 80.0 6.0 0.0 0.0 0.0 0.0 -4,-6 0.0005 1 -2.0 MINOR ENSMUSG00000039738 Slx4 ENSMUST00000128980 - NO_TRANSLATION retained_intron ENSMUSG00000039738 Slx4 ENSMUST00000171762 ENSMUSP00000131380 TRANSLATION protein_coding stop - 5 101.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039738 Slx4 ENSMUST00000145706 - NO_TRANSLATION retained_intron ENSMUSG00000033157 Abhd10 ENSMUST00000138517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033157 Abhd10 ENSMUST00000128348 ENSMUSP00000120653 TRANSLATION nonsense_mediated_decay - - 2 51.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0012 - -2.0 MINOR ENSMUSG00000033157 Abhd10 ENSMUST00000143731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033157 Abhd10 ENSMUST00000155741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033157 Abhd10 ENSMUST00000066983 ENSMUSP00000065282 TRANSLATION protein_coding - CCDS28201.1 1 297.0 4.0 4.25 0.4 29.5 0.0 -3,1 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000022856 Tmem41a ENSMUST00000023562 ENSMUSP00000023562 TRANSLATION protein_coding - CCDS28064.1 1 264.0 0.0 4.682 8.7 69.8 0.0 1,-3 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000022856 Tmem41a ENSMUST00000232635 ENSMUSP00000156055 TRANSLATION nonsense_mediated_decay - - - 59.0 0.0 0.132 0.0 0.0 0.0 1,-3 0.0015 1 -2.0 MINOR ENSMUSG00000022947 Cbr3 ENSMUST00000039620 ENSMUSP00000047712 TRANSLATION protein_coding - CCDS28342.1 1 277.0 28.0 3.0 24.7 123.9 0.0 -4,-2 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000022947 Cbr3 ENSMUST00000231302 ENSMUSP00000156328 TRANSLATION nonsense_mediated_decay - - - 119.0 15.0 1.3 0.0 68.3 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000052537 Or5ac16 ENSMUST00000208244 ENSMUSP00000146813 TRANSLATION protein_coding - CCDS28249.1 2 306.0 0.0 1.0 11.5 152.5 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000052537 Or5ac16 ENSMUST00000064452 ENSMUSP00000065535 TRANSLATION protein_coding - CCDS28249.1 - 306.0 0.0 1.0 11.5 152.5 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033187 BC016579 ENSMUST00000036732 ENSMUSP00000037651 TRANSLATION protein_coding - CCDS49862.1 1 218.0 0.0 3.55 6.8 0.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000040820 Hlcs ENSMUST00000226249 - NO_TRANSLATION retained_intron ENSMUSG00000040820 Hlcs ENSMUST00000226776 - NO_TRANSLATION retained_intron ENSMUSG00000040820 Hlcs ENSMUST00000227698 ENSMUSP00000154056 TRANSLATION protein_coding stop - - 107.0 17.0 2.75 0.0 79.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000040820 Hlcs ENSMUST00000099512 ENSMUSP00000097112 TRANSLATION protein_coding - CCDS28346.1 1 722.0 24.0 8.41 4.6 136.7 0.0 -4,-5 0.8475 8 15.264 ALTERNATIVE:1 ENSMUSG00000040820 Hlcs ENSMUST00000163193 ENSMUSP00000130981 TRANSLATION protein_coding - CCDS28346.1 1 722.0 24.0 8.41 4.6 136.7 0.0 -4,-5 0.8475 8 15.264 ALTERNATIVE:1 ENSMUSG00000040820 Hlcs ENSMUST00000227447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040820 Hlcs ENSMUST00000227618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040820 Hlcs ENSMUST00000227141 ENSMUSP00000153773 TRANSLATION protein_coding - - - 869.0 24.0 8.41 6.7 136.7 0.0 -2,2 1.0 8 16.0 PRINCIPAL:4 ENSMUSG00000040820 Hlcs ENSMUST00000228910 ENSMUSP00000154157 TRANSLATION protein_coding - - - 327.0 24.0 6.08 0.0 136.7 0.0 -4,-5 0.0187 4 9.338 MINOR ENSMUSG00000038148 Cldn16 ENSMUST00000161053 ENSMUSP00000124528 TRANSLATION protein_coding - CCDS28088.1 1 235.0 0.0 1.7 15.2 66.1 4.0 0,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038148 Cldn16 ENSMUST00000115302 ENSMUSP00000110957 TRANSLATION protein_coding - CCDS28088.1 1 235.0 0.0 1.7 15.2 66.1 4.0 0,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037965 Zc3h7a ENSMUST00000138282 - NO_TRANSLATION retained_intron ENSMUSG00000037965 Zc3h7a ENSMUST00000155255 - NO_TRANSLATION retained_intron ENSMUSG00000037965 Zc3h7a ENSMUST00000138185 ENSMUSP00000119480 TRANSLATION protein_coding stop - 1 762.0 4.0 2.14 0.0 0.0 0.0 -4,-7 0.0365 10 -2.0 MINOR ENSMUSG00000037965 Zc3h7a ENSMUST00000139391 - NO_TRANSLATION retained_intron ENSMUSG00000037965 Zc3h7a ENSMUST00000155340 - NO_TRANSLATION retained_intron ENSMUSG00000037965 Zc3h7a ENSMUST00000125537 ENSMUSP00000122525 TRANSLATION protein_coding stop - 5 87.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0085 2 -2.0 MINOR ENSMUSG00000037965 Zc3h7a ENSMUST00000142389 ENSMUSP00000114432 TRANSLATION protein_coding stop - 5 84.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0085 2 -2.0 MINOR ENSMUSG00000037965 Zc3h7a ENSMUST00000140775 - NO_TRANSLATION retained_intron ENSMUSG00000037965 Zc3h7a ENSMUST00000037633 ENSMUSP00000041308 TRANSLATION protein_coding - CCDS49762.1 1 970.0 8.0 3.54 10.3 0.0 0.0 -4,-6 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000037965 Zc3h7a ENSMUST00000140898 ENSMUSP00000118771 TRANSLATION nonsense_mediated_decay start - 3 174.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0101 1 -2.0 MINOR ENSMUSG00000037965 Zc3h7a ENSMUST00000142844 - NO_TRANSLATION retained_intron ENSMUSG00000037965 Zc3h7a ENSMUST00000130355 ENSMUSP00000120931 TRANSLATION protein_coding stop - 5 206.0 0.0 2.14 0.0 0.0 0.0 -4,-7 0.0099 4 -2.0 MINOR ENSMUSG00000037965 Zc3h7a ENSMUST00000140755 ENSMUSP00000120720 TRANSLATION nonsense_mediated_decay - - 1 390.0 0.0 2.14 0.0 0.0 0.0 -4,-7 0.0148 6 -2.0 MINOR ENSMUSG00000037965 Zc3h7a ENSMUST00000143121 - NO_TRANSLATION retained_intron ENSMUSG00000037965 Zc3h7a ENSMUST00000143926 - NO_TRANSLATION retained_intron ENSMUSG00000037965 Zc3h7a ENSMUST00000128083 ENSMUSP00000114246 TRANSLATION protein_coding stop - 1 583.0 0.0 2.14 0.0 0.0 0.0 -4,-7 0.025 9 -2.0 MINOR ENSMUSG00000037965 Zc3h7a ENSMUST00000155343 - NO_TRANSLATION retained_intron ENSMUSG00000037965 Zc3h7a ENSMUST00000145457 - NO_TRANSLATION retained_intron ENSMUSG00000022832 Ropn1 ENSMUST00000231612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022832 Ropn1 ENSMUST00000023530 ENSMUSP00000023530 TRANSLATION protein_coding - CCDS28137.1 1 212.0 1.0 1.0 18.0 0.0 0.0 -4,-5 1.0 5 10.999 PRINCIPAL:1 ENSMUSG00000022832 Ropn1 ENSMUST00000148562 ENSMUSP00000122122 TRANSLATION protein_coding stop - 3 154.0 3.0 1.0 0.0 0.0 0.0 -4,-5 0.038 3 -2.0 MINOR ENSMUSG00000014074 Rnf168 ENSMUST00000155649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014074 Rnf168 ENSMUST00000014218 ENSMUSP00000014218 TRANSLATION protein_coding - - 1 565.0 8.0 2.75 2.6 27.8 0.0 -4,-7 0.9428 4 15.0 PRINCIPAL:4 ENSMUSG00000014074 Rnf168 ENSMUST00000171474 ENSMUSP00000126484 TRANSLATION protein_coding - CCDS49825.1 1 567.0 8.0 2.75 2.6 27.8 0.0 -4,-7 0.9317 4 15.0 ALTERNATIVE:2 ENSMUSG00000030775 Trat1 ENSMUST00000231701 ENSMUSP00000155986 TRANSLATION protein_coding - - - 187.0 0.0 1.4 6.3 111.1 2.0 0,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000030775 Trat1 ENSMUST00000170861 ENSMUSP00000129808 TRANSLATION nonsense_mediated_decay - - 1 54.0 0.0 1.0 0.0 32.7 2.0 -1,-5 0.0025 - -2.0 MINOR ENSMUSG00000030775 Trat1 ENSMUST00000239408 ENSMUSP00000159369 TRANSLATION protein_coding - CCDS37352.1 - 197.0 0.0 1.4 0.0 111.1 2.0 -3,-5 0.278 - 12.0 MINOR ENSMUSG00000009097 Tbx1 ENSMUST00000232335 ENSMUSP00000156061 TRANSLATION protein_coding - CCDS28023.1 - 488.0 0.0 4.33 0.0 268.1 0.0 -4,-7 0.541 - 8.0 ALTERNATIVE:2 ENSMUSG00000009097 Tbx1 ENSMUST00000232589 ENSMUSP00000156125 TRANSLATION protein_coding stop - - 123.0 0.0 0.5 0.0 25.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009097 Tbx1 ENSMUST00000009241 ENSMUSP00000009241 TRANSLATION protein_coding - - 1 479.0 0.0 4.33 0.4 268.1 0.0 -4,-5 0.7629 - 8.0 PRINCIPAL:4 ENSMUSG00000009097 Tbx1 ENSMUST00000232143 ENSMUSP00000155894 TRANSLATION nonsense_mediated_decay - - - 141.0 0.0 0.5 0.0 26.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000009097 Tbx1 ENSMUST00000232557 - NO_TRANSLATION retained_intron ENSMUSG00000033210 Slc9c1 ENSMUST00000159945 ENSMUSP00000124969 TRANSLATION protein_coding - CCDS28198.2 1 1175.0 13.0 3.218 0.0 138.3 19.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033210 Slc9c1 ENSMUST00000162774 ENSMUSP00000137925 TRANSLATION nonsense_mediated_decay start - 1 163.0 0.0 0.8 0.0 48.2 5.0 -3,-5 0.0031 - -2.0 MINOR ENSMUSG00000033210 Slc9c1 ENSMUST00000162151 ENSMUSP00000137721 TRANSLATION nonsense_mediated_decay start - 1 520.0 0.0 1.832 0.0 103.7 17.0 -3,-5 0.0058 - -2.0 MINOR ENSMUSG00000062203 Gspt1 ENSMUST00000166063 - NO_TRANSLATION retained_intron ENSMUSG00000062203 Gspt1 ENSMUST00000164098 - NO_TRANSLATION retained_intron ENSMUSG00000062203 Gspt1 ENSMUST00000229660 - NO_TRANSLATION retained_intron ENSMUSG00000062203 Gspt1 ENSMUST00000080030 ENSMUSP00000078940 TRANSLATION protein_coding - CCDS27961.2 1 636.0 14.0 10.68 1.4 319.5 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:4 ENSMUSG00000062203 Gspt1 ENSMUST00000167571 ENSMUSP00000130583 TRANSLATION protein_coding - CCDS49764.1 1 635.0 14.0 10.68 1.4 319.5 0.0 -4,-5 0.9471 9 15.0 ALTERNATIVE:2 ENSMUSG00000062203 Gspt1 ENSMUST00000167025 ENSMUSP00000130959 TRANSLATION protein_coding start - 3 100.0 0.0 2.25 0.0 69.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051146 Camk2n2 ENSMUST00000052939 ENSMUSP00000057368 TRANSLATION protein_coding - CCDS49795.1 1 79.0 0.0 0.75 31.8 155.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000003955 Fam162a ENSMUST00000004057 ENSMUSP00000004057 TRANSLATION protein_coding - CCDS28146.1 1 155.0 0.0 1.3 11.8 233.9 1.0 -4,-1 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000003955 Fam162a ENSMUST00000231379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003955 Fam162a ENSMUST00000232390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003955 Fam162a ENSMUST00000231351 ENSMUSP00000156171 TRANSLATION protein_coding - - - 64.0 0.0 1.3 0.0 105.5 1.0 -4,-7 0.0236 2 6.0 MINOR ENSMUSG00000022914 Brwd1 ENSMUST00000232898 - NO_TRANSLATION retained_intron ENSMUSG00000022914 Brwd1 ENSMUST00000232801 - NO_TRANSLATION retained_intron ENSMUSG00000022914 Brwd1 ENSMUST00000113827 ENSMUSP00000109458 TRANSLATION protein_coding - CCDS49922.1 1 120.0 0.0 0.0 2.1 0.0 0.0 -4,-7 0.2793 1 1.0 MINOR ENSMUSG00000022914 Brwd1 ENSMUST00000233976 ENSMUSP00000156641 TRANSLATION nonsense_mediated_decay start - - 410.0 0.0 3.6025 0.0 41.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022914 Brwd1 ENSMUST00000233074 ENSMUSP00000156888 TRANSLATION protein_coding start/stop - - 602.0 0.0 3.6625 0.0 41.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000022914 Brwd1 ENSMUST00000023631 ENSMUSP00000023631 TRANSLATION protein_coding - - 1 2304.0 0.0 7.6625 0.1 234.5 0.0 -4,-7 0.7039 11 8.0 PRINCIPAL:2 ENSMUSG00000022914 Brwd1 ENSMUST00000232755 ENSMUSP00000156497 TRANSLATION protein_coding - - - 2259.0 0.0 7.6625 0.1 234.5 0.0 -4,-7 0.4257 11 8.0 ALTERNATIVE:2 ENSMUSG00000022914 Brwd1 ENSMUST00000099502 ENSMUSP00000097101 TRANSLATION protein_coding - CCDS49923.1 1 2304.0 0.0 7.6625 0.1 234.5 0.0 -4,-7 1.0 11 8.0 PRINCIPAL:2 ENSMUSG00000022914 Brwd1 ENSMUST00000233883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022914 Brwd1 ENSMUST00000233699 - NO_TRANSLATION retained_intron ENSMUSG00000022914 Brwd1 ENSMUST00000233610 - NO_TRANSLATION retained_intron ENSMUSG00000022914 Brwd1 ENSMUST00000232993 ENSMUSP00000156919 TRANSLATION protein_coding start/stop - - 398.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0025 3 -2.0 MINOR ENSMUSG00000022914 Brwd1 ENSMUST00000232694 ENSMUSP00000156709 TRANSLATION nonsense_mediated_decay start - - 632.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0044 3 -2.0 MINOR ENSMUSG00000022914 Brwd1 ENSMUST00000233270 - NO_TRANSLATION retained_intron ENSMUSG00000022914 Brwd1 ENSMUST00000232794 - NO_TRANSLATION retained_intron ENSMUSG00000022914 Brwd1 ENSMUST00000233084 ENSMUSP00000156609 TRANSLATION protein_coding start/stop - - 377.0 0.0 1.8 0.0 110.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000022808 Snx4 ENSMUST00000231389 ENSMUSP00000156185 TRANSLATION nonsense_mediated_decay - - - 248.0 0.0 1.7 0.0 83.7 0.0 -4,-5 0.0343 11 -2.0 MINOR ENSMUSG00000022808 Snx4 ENSMUST00000231242 - NO_TRANSLATION retained_intron ENSMUSG00000022808 Snx4 ENSMUST00000023502 ENSMUSP00000023502 TRANSLATION protein_coding - CCDS28129.1 1 450.0 0.0 1.7 7.7 83.7 0.0 -4,-5 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000022808 Snx4 ENSMUST00000232228 - NO_TRANSLATION retained_intron ENSMUSG00000039680 Mrps6 ENSMUST00000232222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039680 Mrps6 ENSMUST00000138961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039680 Mrps6 ENSMUST00000047429 ENSMUSP00000037631 TRANSLATION protein_coding - CCDS28332.1 1 125.0 0.0 2.5 17.9 59.6 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000056423 Uts2b ENSMUST00000070531 ENSMUSP00000070840 TRANSLATION protein_coding - CCDS28091.1 1 113.0 0.0 0.0 2.3 23.2 0.0 2,-1 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000117081 Gm49948 ENSMUST00000113795 ENSMUSP00000109426 TRANSLATION protein_coding,RT - - 1 298.0 0.0 2.0 0.0 25.1 0.0 1,-3 0.8206 - -2.0 PRINCIPAL:1 ENSMUSG00000004070 Hmox2 ENSMUST00000121529 ENSMUSP00000112378 TRANSLATION protein_coding stop - 2 228.0 20.0 3.83 0.0 261.3 0.0 -4,-5 0.0033 12 -2.0 MINOR ENSMUSG00000004070 Hmox2 ENSMUST00000120232 ENSMUSP00000112397 TRANSLATION protein_coding - CCDS27924.1 1 315.0 22.0 4.63 15.7 270.1 1.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000004070 Hmox2 ENSMUST00000118885 ENSMUSP00000113110 TRANSLATION protein_coding - CCDS27924.1 1 315.0 22.0 4.63 15.7 270.1 1.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000004070 Hmox2 ENSMUST00000004172 ENSMUSP00000004172 TRANSLATION protein_coding - CCDS27924.1 1 315.0 22.0 4.63 15.7 270.1 1.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000004070 Hmox2 ENSMUST00000154117 ENSMUSP00000122699 TRANSLATION protein_coding stop - 2 65.0 0.0 1.33 0.0 70.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000004070 Hmox2 ENSMUST00000140367 ENSMUSP00000115932 TRANSLATION protein_coding stop - 2 93.0 6.0 1.83 0.0 67.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000068073 1110025L11Rik ENSMUST00000089104 ENSMUSP00000086505 TRANSLATION protein_coding - CCDS59624.1 - 78.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000022770 Dlg1 ENSMUST00000155847 - NO_TRANSLATION retained_intron ENSMUSG00000022770 Dlg1 ENSMUST00000023454 ENSMUSP00000023454 TRANSLATION protein_coding - CCDS57026.1 1 872.0 14.0 17.969 9.3 776.6 0.0 -4,-7 0.6933 18 13.058 MINOR ENSMUSG00000022770 Dlg1 ENSMUST00000100001 ENSMUSP00000097581 TRANSLATION protein_coding - CCDS57025.1 5 905.0 14.0 18.969 11.6 841.8 0.0 -4,-7 1.0 18 16.262 PRINCIPAL:2 ENSMUSG00000022770 Dlg1 ENSMUST00000137322 - NO_TRANSLATION retained_intron ENSMUSG00000022770 Dlg1 ENSMUST00000147382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022770 Dlg1 ENSMUST00000140258 - NO_TRANSLATION retained_intron ENSMUSG00000022770 Dlg1 ENSMUST00000064477 ENSMUSP00000064280 TRANSLATION protein_coding - CCDS28107.1 1 927.0 14.0 18.344 11.6 841.8 0.0 -4,-7 0.9593 19 15.014 MINOR ENSMUSG00000022770 Dlg1 ENSMUST00000130920 ENSMUSP00000138804 TRANSLATION nonsense_mediated_decay start - 3 30.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000022770 Dlg1 ENSMUST00000115196 ENSMUSP00000110850 TRANSLATION protein_coding - CCDS57027.1 1 834.0 14.0 17.303 12.4 650.7 0.0 -4,-2 0.6257 18 11.942 MINOR ENSMUSG00000022770 Dlg1 ENSMUST00000115205 ENSMUSP00000110859 TRANSLATION protein_coding - CCDS57025.1 1 905.0 14.0 18.969 11.6 841.8 0.0 -4,-7 1.0 18 16.262 PRINCIPAL:2 ENSMUSG00000022770 Dlg1 ENSMUST00000155958 - NO_TRANSLATION retained_intron ENSMUSG00000022770 Dlg1 ENSMUST00000115201 ENSMUSP00000110855 TRANSLATION protein_coding - - 5 912.0 14.0 19.233 9.6 841.8 0.0 -4,-7 0.7398 19 16.262 ALTERNATIVE:1 ENSMUSG00000022770 Dlg1 ENSMUST00000138213 - NO_TRANSLATION retained_intron ENSMUSG00000022770 Dlg1 ENSMUST00000132176 ENSMUSP00000138782 TRANSLATION nonsense_mediated_decay - - 1 558.0 0.0 10.08 0.0 485.4 0.0 -4,-7 0.0053 8 -2.0 MINOR ENSMUSG00000022770 Dlg1 ENSMUST00000131136 ENSMUSP00000115954 TRANSLATION protein_coding start/stop - 1 358.0 0.0 8.65 0.0 224.5 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000039903 Eva1c ENSMUST00000232274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039903 Eva1c ENSMUST00000152223 ENSMUSP00000119510 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000039903 Eva1c ENSMUST00000099548 ENSMUSP00000097145 TRANSLATION protein_coding - - 1 446.0 0.0 3.36 0.0 327.6 3.0 -4,-5 0.1242 6 12.0 MINOR ENSMUSG00000039903 Eva1c ENSMUST00000232665 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039903 Eva1c ENSMUST00000099543 ENSMUSP00000097141 TRANSLATION protein_coding - CCDS28319.1 1 392.0 0.0 2.31 3.1 259.6 3.0 -4,-2 0.1411 4 6.498 MINOR ENSMUSG00000039903 Eva1c ENSMUST00000138064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039903 Eva1c ENSMUST00000231280 ENSMUSP00000156225 TRANSLATION protein_coding - - - 333.0 0.0 1.55 4.2 256.8 3.0 -4,-2 0.1909 4 5.166 MINOR ENSMUSG00000039903 Eva1c ENSMUST00000130868 ENSMUSP00000121430 TRANSLATION nonsense_mediated_decay - - 1 70.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000039903 Eva1c ENSMUST00000037539 ENSMUSP00000036695 TRANSLATION protein_coding - CCDS57038.1 1 440.0 0.0 3.36 7.2 327.6 3.0 -4,-2 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000039903 Eva1c ENSMUST00000154180 ENSMUSP00000119830 TRANSLATION protein_coding stop - 5 145.0 0.0 2.16 0.0 89.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000116636 Gm20741 ENSMUST00000232664 ENSMUSP00000156212 TRANSLATION protein_coding - - - 164.0 0.0 0.0 0.0 83.4 0.0 -4,-5 0.7083 - 6.0 PRINCIPAL:1 ENSMUSG00000022884 Eif4a2 ENSMUST00000144493 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000156227 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000232287 ENSMUSP00000156170 TRANSLATION protein_coding stop - - 322.0 15.0 8.264 0.0 179.7 0.0 -4,-5 0.0011 10 -2.0 MINOR ENSMUSG00000022884 Eif4a2 ENSMUST00000130775 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000140017 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000077605 ENSMUSP00000090876 TRANSLATION protein_coding - CCDS49805.1 1 362.0 15.0 9.344 5.8 242.0 0.0 -4,-5 0.2305 10 15.638 MINOR ENSMUSG00000022884 Eif4a2 ENSMUST00000147117 ENSMUSP00000121745 TRANSLATION nonsense_mediated_decay - - 1 96.0 12.0 2.014 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022884 Eif4a2 ENSMUST00000135020 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000131871 ENSMUSP00000118141 TRANSLATION nonsense_mediated_decay - - 5 97.0 12.0 2.014 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000022884 Eif4a2 ENSMUST00000148085 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000134816 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000125969 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000123413 ENSMUSP00000115649 TRANSLATION nonsense_mediated_decay - CCDS49805.1 1 362.0 15.0 9.344 5.8 242.0 0.0 -4,-5 0.2305 - -2.0 MINOR ENSMUSG00000022884 Eif4a2 ENSMUST00000168891 ENSMUSP00000127030 TRANSLATION protein_coding - CCDS49806.1 1 312.0 2.0 7.705 2.4 189.4 0.0 -4,-5 0.0293 10 2.82 MINOR ENSMUSG00000022884 Eif4a2 ENSMUST00000125553 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000130113 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000187168 ENSMUSP00000140809 TRANSLATION protein_coding - CCDS49805.1 1 362.0 15.0 9.344 5.8 242.0 0.0 -4,-5 0.2305 10 15.638 MINOR ENSMUSG00000022884 Eif4a2 ENSMUST00000142031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000022884 Eif4a2 ENSMUST00000130483 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000141392 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000149328 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000023599 ENSMUSP00000023599 TRANSLATION protein_coding - CCDS28074.1 1 407.0 15.0 10.344 36.9 257.0 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000022884 Eif4a2 ENSMUST00000150117 - NO_TRANSLATION retained_intron ENSMUSG00000022884 Eif4a2 ENSMUST00000152129 - NO_TRANSLATION retained_intron ENSMUSG00000025613 Cct8 ENSMUST00000177301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025613 Cct8 ENSMUST00000176041 ENSMUSP00000135377 TRANSLATION protein_coding stop - 5 158.0 2.0 4.0 0.0 153.3 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000025613 Cct8 ENSMUST00000175750 ENSMUSP00000134920 TRANSLATION protein_coding start/stop - 5 239.0 1.0 6.0 0.0 228.1 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000025613 Cct8 ENSMUST00000177376 ENSMUSP00000135498 TRANSLATION nonsense_mediated_decay - - 5 71.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025613 Cct8 ENSMUST00000176589 - NO_TRANSLATION retained_intron ENSMUSG00000025613 Cct8 ENSMUST00000176241 - NO_TRANSLATION retained_intron ENSMUSG00000025613 Cct8 ENSMUST00000177485 - NO_TRANSLATION retained_intron ENSMUSG00000025613 Cct8 ENSMUST00000176750 ENSMUSP00000135830 TRANSLATION protein_coding stop - 2 132.0 2.0 3.25 0.0 133.2 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000025613 Cct8 ENSMUST00000026704 ENSMUSP00000026704 TRANSLATION protein_coding - CCDS37384.1 1 548.0 3.0 14.28 32.9 512.6 0.0 -4,-6 1.0 36 19.0 PRINCIPAL:1 ENSMUSG00000025613 Cct8 ENSMUST00000175977 ENSMUSP00000135651 TRANSLATION protein_coding - - 5 489.0 3.0 13.53 0.0 339.2 0.0 -4,-6 0.004 29 7.5 MINOR ENSMUSG00000005732 Ranbp1 ENSMUST00000123073 - NO_TRANSLATION retained_intron ENSMUSG00000005732 Ranbp1 ENSMUST00000134035 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005732 Ranbp1 ENSMUST00000115645 ENSMUSP00000111309 TRANSLATION protein_coding - CCDS37280.1 1 203.0 0.0 4.35 2.9 187.6 0.0 -4,-5 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000005732 Ranbp1 ENSMUST00000052325 ENSMUSP00000055288 TRANSLATION protein_coding - - 3 153.0 0.0 3.35 1.7 162.5 0.0 -4,-5 0.2276 5 8.864 MINOR ENSMUSG00000022887 Masp1 ENSMUST00000230040 ENSMUSP00000155343 TRANSLATION protein_coding - - - 385.0 23.0 6.85 0.1 250.9 0.0 4,-1 0.0038 6 1.998 MINOR ENSMUSG00000022887 Masp1 ENSMUST00000089883 ENSMUSP00000087327 TRANSLATION protein_coding - CCDS37303.1 1 704.0 29.0 14.25 2.1 549.4 0.0 4,-1 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000022887 Masp1 ENSMUST00000229152 - NO_TRANSLATION retained_intron ENSMUSG00000022887 Masp1 ENSMUST00000229619 ENSMUSP00000155665 TRANSLATION protein_coding - - - 733.0 23.0 9.3 0.8 474.6 0.0 4,-1 0.1234 10 3.51 MINOR ENSMUSG00000022962 Gart ENSMUST00000156713 ENSMUSP00000119272 TRANSLATION nonsense_mediated_decay - - 5 306.0 20.0 7.75 0.0 430.8 0.0 -4,-2 0.0009 16 -2.0 MINOR ENSMUSG00000022962 Gart ENSMUST00000231444 ENSMUSP00000155865 TRANSLATION protein_coding stop - - 64.0 1.0 1.5 0.0 64.2 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000022962 Gart ENSMUST00000232289 ENSMUSP00000156002 TRANSLATION protein_coding - CCDS28329.1 - 1010.0 36.0 20.54 13.1 881.0 0.0 -4,-2 1.0 39 22.0 PRINCIPAL:1 ENSMUSG00000022962 Gart ENSMUST00000231775 - NO_TRANSLATION retained_intron ENSMUSG00000022962 Gart ENSMUST00000232620 - NO_TRANSLATION retained_intron ENSMUSG00000022962 Gart ENSMUST00000232643 ENSMUSP00000156130 TRANSLATION protein_coding start - - 82.0 10.0 2.08 0.0 108.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000022962 Gart ENSMUST00000231702 - NO_TRANSLATION retained_intron ENSMUSG00000022962 Gart ENSMUST00000231863 - NO_TRANSLATION retained_intron ENSMUSG00000022962 Gart ENSMUST00000023684 ENSMUSP00000023684 TRANSLATION protein_coding - CCDS28329.1 1 1010.0 36.0 20.54 13.1 881.0 0.0 -4,-2 1.0 39 22.0 PRINCIPAL:1 ENSMUSG00000022962 Gart ENSMUST00000232640 ENSMUSP00000155957 TRANSLATION protein_coding start - - 99.0 2.0 1.42 0.0 59.3 0.0 -4,-5 0.0001 3 -2.0 MINOR ENSMUSG00000022962 Gart ENSMUST00000120450 ENSMUSP00000114034 TRANSLATION protein_coding - - 1 433.0 20.0 9.83 4.1 529.2 0.0 -4,-2 0.052 21 1.024 MINOR ENSMUSG00000022962 Gart ENSMUST00000232367 ENSMUSP00000156142 TRANSLATION protein_coding stop - - 199.0 14.0 4.75 0.0 251.4 0.0 -4,-2 0.0 10 -2.0 MINOR ENSMUSG00000022962 Gart ENSMUST00000231380 ENSMUSP00000156232 TRANSLATION protein_coding - - - 433.0 20.0 9.83 4.1 529.2 0.0 -4,-2 0.052 21 1.024 MINOR ENSMUSG00000022875 Kng1 ENSMUST00000039492 ENSMUSP00000040485 TRANSLATION protein_coding - CCDS28073.1 1 432.0 0.0 2.935 2.6 226.8 0.0 3,-1 1.0 13 9.0 PRINCIPAL:2 ENSMUSG00000022875 Kng1 ENSMUST00000089902 ENSMUSP00000087346 TRANSLATION protein_coding - CCDS49803.1 1 480.0 0.0 2.935 0.0 226.8 0.0 3,-1 0.3204 14 8.0 ALTERNATIVE:2 ENSMUSG00000022875 Kng1 ENSMUST00000125790 ENSMUSP00000121701 TRANSLATION protein_coding stop - 5 133.0 0.0 1.135 0.0 69.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000022875 Kng1 ENSMUST00000023589 ENSMUSP00000023589 TRANSLATION protein_coding - CCDS49804.1 1 661.0 0.0 2.935 0.0 226.8 0.0 3,-1 0.3502 16 8.0 ALTERNATIVE:2 ENSMUSG00000051989 Smim11 ENSMUST00000118064 ENSMUSP00000113086 TRANSLATION protein_coding - CCDS37404.1 2 55.0 0.0 1.0 10.3 89.7 1.0 0,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000051989 Smim11 ENSMUST00000063641 ENSMUSP00000070724 TRANSLATION protein_coding - CCDS37404.1 1 55.0 0.0 1.0 10.3 89.7 1.0 0,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000079594 Cstdc6 ENSMUST00000114850 ENSMUSP00000110500 TRANSLATION protein_coding - CCDS49840.1 1 96.0 0.0 2.75 19.2 81.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000038084 Opa1 ENSMUST00000160153 - NO_TRANSLATION retained_intron ENSMUSG00000038084 Opa1 ENSMUST00000160597 ENSMUSP00000124223 TRANSLATION protein_coding - CCDS28096.1 1 960.0 20.0 9.105 18.1 130.3 0.0 -4,-2 1.0 44 18.0 PRINCIPAL:3 ENSMUSG00000038084 Opa1 ENSMUST00000160475 ENSMUSP00000124739 TRANSLATION nonsense_mediated_decay - - 1 692.0 20.0 9.105 0.0 130.3 0.0 -4,-2 0.0801 24 -2.0 MINOR ENSMUSG00000038084 Opa1 ENSMUST00000162240 ENSMUSP00000124029 TRANSLATION protein_coding start/stop - 5 296.0 12.0 3.0 0.0 58.9 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000038084 Opa1 ENSMUST00000160101 - NO_TRANSLATION retained_intron ENSMUSG00000038084 Opa1 ENSMUST00000038867 ENSMUSP00000036993 TRANSLATION protein_coding - CCDS57024.1 1 978.0 20.0 9.105 16.1 130.3 0.0 -4,-2 0.9798 43 17.532 ALTERNATIVE:1 ENSMUSG00000038084 Opa1 ENSMUST00000159036 - NO_TRANSLATION retained_intron ENSMUSG00000038084 Opa1 ENSMUST00000161186 ENSMUSP00000123880 TRANSLATION protein_coding stop - 5 997.0 20.0 9.105 18.1 130.3 0.0 -4,-2 0.8284 45 -2.0 MINOR ENSMUSG00000045521 Tssk2 ENSMUST00000055374 ENSMUSP00000051035 TRANSLATION protein_coding - CCDS28012.1 - 358.0 19.0 1.0 11.4 218.8 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000063020 Or5ac15 ENSMUST00000213228 ENSMUSP00000149646 TRANSLATION protein_coding - CCDS28246.1 5 306.0 0.0 1.0 10.8 160.6 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063020 Or5ac15 ENSMUST00000216519 ENSMUSP00000149379 TRANSLATION protein_coding - CCDS28246.1 5 306.0 0.0 1.0 10.8 160.6 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063020 Or5ac15 ENSMUST00000072608 ENSMUSP00000072407 TRANSLATION protein_coding - CCDS28246.1 - 306.0 0.0 1.0 10.8 160.6 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060657 Marf1 ENSMUST00000090300 ENSMUSP00000087770 TRANSLATION protein_coding - CCDS37262.1 5 1736.0 0.0 7.15 8.0 404.2 0.0 -4,-5 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000060657 Marf1 ENSMUST00000229614 ENSMUSP00000154869 TRANSLATION protein_coding - - - 576.0 0.0 4.0 0.0 199.1 0.0 -4,-5 0.0 9 0.0 MINOR ENSMUSG00000060657 Marf1 ENSMUST00000231032 - NO_TRANSLATION retained_intron ENSMUSG00000092470 Gm20518 ENSMUST00000150068 ENSMUSP00000115071 TRANSLATION nonsense_mediated_decay,RT - - 2 580.0 4.0 1.355 0.0 117.3 0.0 2,-3 0.8774 - -2.0 PRINCIPAL:1 ENSMUSG00000094422 Or5ac23 ENSMUST00000074125 ENSMUSP00000073762 TRANSLATION protein_coding - CCDS28254.1 - 305.0 0.0 1.0 0.0 167.3 7.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094422 Or5ac23 ENSMUST00000213910 ENSMUSP00000149415 TRANSLATION protein_coding - CCDS28254.1 5 305.0 0.0 1.0 0.0 167.3 7.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000092417 Gpank1 ENSMUST00000052167 ENSMUSP00000056646 TRANSLATION protein_coding - CCDS28685.1 1 372.0 0.0 0.546 0.0 76.2 0.0 -2,-4 0.2276 1 12.0 MINOR ENSMUSG00000092417 Gpank1 ENSMUST00000173380 ENSMUSP00000134694 TRANSLATION protein_coding stop - 5 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000092417 Gpank1 ENSMUST00000177018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000092417 Gpank1 ENSMUST00000165306 ENSMUSP00000133240 TRANSLATION protein_coding - CCDS50084.1 1 349.0 0.0 0.546 5.5 76.2 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000092417 Gpank1 ENSMUST00000173043 ENSMUSP00000135684 TRANSLATION protein_coding stop - 1 201.0 0.0 0.546 0.0 27.5 0.0 -4,-5 0.0298 1 -2.0 MINOR ENSMUSG00000068036 Afdn ENSMUST00000239324 ENSMUSP00000159255 TRANSLATION protein_coding stop - - 87.0 0.0 2.55 0.0 62.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000068036 Afdn ENSMUST00000123030 - NO_TRANSLATION retained_intron ENSMUSG00000068036 Afdn ENSMUST00000137531 ENSMUSP00000116711 TRANSLATION protein_coding start - 3 380.0 0.0 0.6 0.0 0.0 0.0 -4,-6 0.0 16 -2.0 MINOR ENSMUSG00000068036 Afdn ENSMUST00000170827 ENSMUSP00000128891 TRANSLATION protein_coding - - 5 1805.0 0.0 10.6 1.3 356.4 0.0 -4,-5 0.4319 57 8.12 ALTERNATIVE:2 ENSMUSG00000068036 Afdn ENSMUST00000139347 ENSMUSP00000115250 TRANSLATION protein_coding stop - 5 229.0 0.0 0.7 0.0 76.5 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000068036 Afdn ENSMUST00000141640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068036 Afdn ENSMUST00000150848 ENSMUSP00000122447 TRANSLATION protein_coding - - 5 1805.0 0.0 10.6 1.3 356.4 0.0 -4,-5 0.4319 59 8.12 ALTERNATIVE:2 ENSMUSG00000068036 Afdn ENSMUST00000156591 ENSMUSP00000122204 TRANSLATION protein_coding stop - 3 221.0 0.0 0.7 0.0 76.5 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000068036 Afdn ENSMUST00000137784 ENSMUSP00000119153 TRANSLATION protein_coding - - 5 1827.0 0.0 10.265 3.5 356.4 0.0 -4,-5 0.8981 59 8.328 ALTERNATIVE:2 ENSMUSG00000068036 Afdn ENSMUST00000136087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068036 Afdn ENSMUST00000137495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068036 Afdn ENSMUST00000124922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068036 Afdn ENSMUST00000137708 ENSMUSP00000114485 TRANSLATION protein_coding - - 5 1663.0 0.0 9.5 1.3 356.4 0.0 -4,-5 0.2394 53 5.918 MINOR ENSMUSG00000068036 Afdn ENSMUST00000139666 ENSMUSP00000118318 TRANSLATION protein_coding - CCDS49955.1 2 1820.0 0.0 10.1 3.5 356.4 0.0 -4,-5 1.0 60 7.998 PRINCIPAL:3 ENSMUSG00000068036 Afdn ENSMUST00000124188 - NO_TRANSLATION retained_intron ENSMUSG00000068036 Afdn ENSMUST00000133422 - NO_TRANSLATION retained_intron ENSMUSG00000068036 Afdn ENSMUST00000137503 - NO_TRANSLATION retained_intron ENSMUSG00000023940 Sgo1 ENSMUST00000144474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023940 Sgo1 ENSMUST00000024736 ENSMUSP00000024736 TRANSLATION protein_coding - CCDS28881.1 1 517.0 0.0 1.0 0.3 69.4 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000023940 Sgo1 ENSMUST00000146019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023932 Cdc5l ENSMUST00000232900 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023932 Cdc5l ENSMUST00000232910 - NO_TRANSLATION retained_intron ENSMUSG00000023932 Cdc5l ENSMUST00000024727 ENSMUSP00000024727 TRANSLATION protein_coding - CCDS37627.1 1 802.0 0.0 8.1 30.9 353.6 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000024077 Strn ENSMUST00000024881 ENSMUSP00000024881 TRANSLATION protein_coding - - 1 627.0 0.0 4.689 0.0 118.0 0.0 -4,-7 0.0187 20 2.202 MINOR ENSMUSG00000024077 Strn ENSMUST00000145480 ENSMUSP00000117663 TRANSLATION protein_coding start/stop - 3 267.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0011 8 -2.0 MINOR ENSMUSG00000024077 Strn ENSMUST00000145910 ENSMUSP00000120830 TRANSLATION protein_coding - CCDS28978.1 1 780.0 0.0 6.589 7.6 283.4 0.0 -4,-5 1.0 22 14.0 PRINCIPAL:1 ENSMUSG00000041119 Pde9a ENSMUST00000141314 ENSMUSP00000117364 TRANSLATION nonsense_mediated_decay start - 3 91.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000236874 ENSMUSP00000158240 TRANSLATION nonsense_mediated_decay - - - 37.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000154392 ENSMUSP00000117065 TRANSLATION protein_coding start - 3 180.0 1.0 4.23 0.0 66.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000136384 ENSMUSP00000116724 TRANSLATION protein_coding - - 2 387.0 7.0 9.3135 1.7 293.1 0.0 -4,-6 0.3819 6 11.519 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000237406 ENSMUSP00000158075 TRANSLATION nonsense_mediated_decay - - - 37.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000143549 ENSMUSP00000117911 TRANSLATION nonsense_mediated_decay - - 5 51.0 4.0 0.0 0.0 0.0 0.0 -4,-7 0.0004 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000235644 ENSMUSP00000157429 TRANSLATION nonsense_mediated_decay - - - 48.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000127929 ENSMUSP00000117611 TRANSLATION protein_coding - CCDS28605.1 1 534.0 11.0 9.3885 3.1 293.1 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:2 ENSMUSG00000041119 Pde9a ENSMUST00000131417 ENSMUSP00000115188 TRANSLATION nonsense_mediated_decay - - 5 63.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000130547 - NO_TRANSLATION retained_intron ENSMUSG00000041119 Pde9a ENSMUST00000137927 ENSMUSP00000121126 TRANSLATION nonsense_mediated_decay - - 5 37.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000237363 ENSMUSP00000158458 TRANSLATION protein_coding - - - 383.0 7.0 9.3135 1.7 272.9 0.0 -4,-6 0.301 6 10.853 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000235639 ENSMUSP00000158058 TRANSLATION protein_coding start - - 495.0 7.0 9.2385 0.0 293.1 0.0 -4,-5 0.0168 6 -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000154567 - NO_TRANSLATION retained_intron ENSMUSG00000041119 Pde9a ENSMUST00000236077 ENSMUSP00000158208 TRANSLATION nonsense_mediated_decay - - - 68.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000238091 ENSMUSP00000157753 TRANSLATION protein_coding - - - 377.0 7.0 9.2475 0.0 293.1 0.0 -4,-6 0.0234 6 11.054 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000155113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041119 Pde9a ENSMUST00000236850 ENSMUSP00000158049 TRANSLATION nonsense_mediated_decay - - - 63.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000155395 - NO_TRANSLATION retained_intron ENSMUSG00000041119 Pde9a ENSMUST00000124902 ENSMUSP00000118869 TRANSLATION nonsense_mediated_decay - - 5 102.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000236367 - NO_TRANSLATION retained_intron ENSMUSG00000041119 Pde9a ENSMUST00000235719 ENSMUSP00000158101 TRANSLATION protein_coding - - - 452.0 8.0 7.1835 0.0 153.9 0.0 -4,-5 0.0 7 5.592 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000047168 ENSMUSP00000038005 TRANSLATION protein_coding - CCDS28605.1 1 534.0 11.0 9.3885 3.1 293.1 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:2 ENSMUSG00000041119 Pde9a ENSMUST00000237698 ENSMUSP00000157717 TRANSLATION nonsense_mediated_decay start - - 30.0 0.0 0.066 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000134525 ENSMUSP00000121003 TRANSLATION protein_coding - - 5 508.0 11.0 9.3885 0.0 293.1 0.0 -4,-5 0.0303 7 14.0 ALTERNATIVE:2 ENSMUSG00000041119 Pde9a ENSMUST00000238006 ENSMUSP00000158100 TRANSLATION protein_coding start - - 115.0 0.0 2.48 0.0 55.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000236454 ENSMUSP00000157420 TRANSLATION protein_coding - - - 387.0 7.0 9.3135 1.7 293.1 0.0 -4,-6 0.3819 6 11.519 MINOR ENSMUSG00000041119 Pde9a ENSMUST00000236675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007033 Hspa1l ENSMUST00000007248 ENSMUSP00000007248 TRANSLATION protein_coding - CCDS28670.1 1 641.0 20.0 1.0 27.7 865.5 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000057417 Dcpp3 ENSMUST00000115428 ENSMUSP00000111088 TRANSLATION protein_coding - CCDS37480.1 2 170.0 0.0 2.0 0.0 27.7 0.0 4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000057417 Dcpp3 ENSMUST00000234395 ENSMUSP00000156985 TRANSLATION protein_coding - CCDS37480.1 - 170.0 0.0 2.0 0.0 27.7 0.0 4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000024457 Trim26 ENSMUST00000130367 ENSMUSP00000114896 TRANSLATION protein_coding - CCDS37613.1 5 545.0 16.0 5.31 8.1 179.4 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000024457 Trim26 ENSMUST00000123715 ENSMUSP00000118438 TRANSLATION protein_coding - - 5 326.0 16.0 3.11 0.0 82.0 0.0 -4,-5 0.0 6 7.758 MINOR ENSMUSG00000024457 Trim26 ENSMUST00000130801 ENSMUSP00000118388 TRANSLATION protein_coding stop - 3 253.0 16.0 1.85 0.0 82.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000024457 Trim26 ENSMUST00000134325 - NO_TRANSLATION retained_intron ENSMUSG00000024457 Trim26 ENSMUST00000053434 ENSMUSP00000060103 TRANSLATION protein_coding - CCDS37613.1 1 545.0 16.0 5.31 8.1 179.4 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000024457 Trim26 ENSMUST00000124307 - NO_TRANSLATION retained_intron ENSMUSG00000024457 Trim26 ENSMUST00000124136 ENSMUSP00000120764 TRANSLATION protein_coding start - 5 195.0 0.0 2.33 0.0 51.3 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024457 Trim26 ENSMUST00000144182 ENSMUSP00000114565 TRANSLATION protein_coding stop - 1 394.0 16.0 4.285 0.0 133.3 0.0 -4,-5 0.001 6 -2.0 MINOR ENSMUSG00000024457 Trim26 ENSMUST00000156872 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007021 Syngr3 ENSMUST00000130936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007021 Syngr3 ENSMUST00000007236 ENSMUSP00000007236 TRANSLATION protein_coding - CCDS28491.1 1 229.0 0.0 3.1 34.2 86.0 0.0 -4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000025732 Mcrip2 ENSMUST00000236479 ENSMUSP00000157779 TRANSLATION protein_coding - - - 146.0 0.0 0.0 0.1 63.6 0.0 -4,-7 0.0006 3 3.696 MINOR ENSMUSG00000025732 Mcrip2 ENSMUST00000235578 - NO_TRANSLATION retained_intron ENSMUSG00000025732 Mcrip2 ENSMUST00000237080 ENSMUSP00000157703 TRANSLATION nonsense_mediated_decay - - - 65.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000025732 Mcrip2 ENSMUST00000237876 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025732 Mcrip2 ENSMUST00000235806 ENSMUSP00000158493 TRANSLATION protein_coding - - - 145.0 0.0 0.0 0.1 63.9 0.0 -4,-7 0.0006 3 3.714 MINOR ENSMUSG00000025732 Mcrip2 ENSMUST00000026828 ENSMUSP00000026828 TRANSLATION protein_coding - CCDS28535.1 1 160.0 0.0 0.0 8.3 102.0 0.0 -4,-7 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000025732 Mcrip2 ENSMUST00000237000 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024105 Themis3 ENSMUST00000024914 ENSMUSP00000024914 TRANSLATION protein_coding - CCDS50170.1 1 569.0 0.0 0.0 0.1 320.3 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000073460 Pnldc1 ENSMUST00000233711 - NO_TRANSLATION retained_intron ENSMUSG00000073460 Pnldc1 ENSMUST00000233474 ENSMUSP00000156494 TRANSLATION nonsense_mediated_decay - - - 315.0 0.0 8.441 0.0 237.7 0.0 -4,-6 0.0036 - -2.0 MINOR ENSMUSG00000073460 Pnldc1 ENSMUST00000163394 ENSMUSP00000129377 TRANSLATION protein_coding - CCDS49948.1 1 531.0 0.0 14.441 10.6 264.6 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073460 Pnldc1 ENSMUST00000233189 ENSMUSP00000156846 TRANSLATION nonsense_mediated_decay start - - 25.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073460 Pnldc1 ENSMUST00000233548 ENSMUSP00000156659 TRANSLATION nonsense_mediated_decay - - - 261.0 0.0 6.941 0.0 149.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000073460 Pnldc1 ENSMUST00000233098 ENSMUSP00000156408 TRANSLATION nonsense_mediated_decay start - - 34.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000073460 Pnldc1 ENSMUST00000232982 ENSMUSP00000156864 TRANSLATION protein_coding start/stop - - 206.0 0.0 5.125 0.0 140.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000023885 Thbs2 ENSMUST00000170872 ENSMUSP00000128308 TRANSLATION protein_coding - CCDS49958.1 1 1172.0 125.0 14.7 5.7 806.3 0.0 2,-2 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000023885 Thbs2 ENSMUST00000232616 - NO_TRANSLATION retained_intron ENSMUSG00000024127 Prepl ENSMUST00000072406 ENSMUSP00000072239 TRANSLATION protein_coding - CCDS29005.1 1 638.0 0.0 11.75 11.0 209.2 0.0 -4,-5 1.0 17 9.0 PRINCIPAL:4 ENSMUSG00000024127 Prepl ENSMUST00000234393 ENSMUSP00000157235 TRANSLATION protein_coding stop - - 141.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000024127 Prepl ENSMUST00000234994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024127 Prepl ENSMUST00000234036 - NO_TRANSLATION retained_intron ENSMUSG00000024127 Prepl ENSMUST00000171795 ENSMUSP00000130967 TRANSLATION protein_coding - CCDS50202.1 1 725.0 0.0 11.75 10.9 208.8 0.0 -4,-2 0.9174 17 8.97 ALTERNATIVE:1 ENSMUSG00000024127 Prepl ENSMUST00000234676 ENSMUSP00000157296 TRANSLATION protein_coding stop - - 162.0 0.0 3.25 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000091531 Or12d2 ENSMUST00000169373 ENSMUSP00000126737 TRANSLATION protein_coding - CCDS28745.1 - 308.0 0.0 1.0 12.8 174.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091531 Or12d2 ENSMUST00000217590 ENSMUSP00000149168 TRANSLATION protein_coding - CCDS28745.1 5 308.0 0.0 1.0 12.8 174.5 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000092077 Or12d12 ENSMUST00000058046 ENSMUSP00000061042 TRANSLATION protein_coding - CCDS28744.1 - 308.0 0.0 1.0 12.8 179.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000092077 Or12d12 ENSMUST00000215392 ENSMUSP00000149851 TRANSLATION protein_coding - CCDS28744.1 5 308.0 0.0 1.0 12.8 179.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000092077 Or12d12 ENSMUST00000214376 ENSMUSP00000149603 TRANSLATION protein_coding - CCDS28744.1 5 308.0 0.0 1.0 12.8 179.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073448 Gm10509 ENSMUST00000249261 ENSMUSP00000159640 TRANSLATION protein_coding - - - 723.0 79.0 0.8 0.3 519.0 0.0 -4,-7 0.8731 - 18.0 PRINCIPAL:1 ENSMUSG00000073448 Gm10509 ENSMUST00000249265 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073448 Gm10509 ENSMUST00000249269 ENSMUSP00000159646 TRANSLATION protein_coding - - - 723.0 79.0 0.8 0.3 519.0 0.0 -4,-7 0.8731 - 18.0 PRINCIPAL:1 ENSMUSG00000073448 Gm10509 ENSMUST00000249263 ENSMUSP00000159641 TRANSLATION protein_coding - - - 723.0 79.0 0.8 0.3 519.0 0.0 -4,-7 0.8731 - 18.0 PRINCIPAL:1 ENSMUSG00000073448 Gm10509 ENSMUST00000249267 ENSMUSP00000159644 TRANSLATION protein_coding - - - 702.0 79.0 0.8 0.0 438.9 0.0 -4,-5 0.2084 - 13.194 MINOR ENSMUSG00000073448 Gm10509 ENSMUST00000249262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073448 Gm10509 ENSMUST00000249266 ENSMUSP00000159643 TRANSLATION protein_coding - - - 723.0 79.0 0.8 0.3 519.0 0.0 -4,-7 0.8731 - 18.0 PRINCIPAL:1 ENSMUSG00000073448 Gm10509 ENSMUST00000249264 ENSMUSP00000159642 TRANSLATION protein_coding - - - 723.0 79.0 0.8 0.3 519.0 0.0 -4,-7 0.8731 - 18.0 PRINCIPAL:1 ENSMUSG00000073448 Gm10509 ENSMUST00000249268 ENSMUSP00000159645 TRANSLATION protein_coding - - - 682.0 79.0 0.8 0.0 438.9 0.0 -4,-5 0.1514 - 13.194 MINOR ENSMUSG00000024209 Acsbg3 ENSMUST00000025048 ENSMUSP00000025048 TRANSLATION protein_coding - CCDS37666.1 1 705.0 22.0 3.89 0.0 220.0 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000024209 Acsbg3 ENSMUST00000125425 - NO_TRANSLATION retained_intron ENSMUSG00000062202 Btbd9 ENSMUST00000235643 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000237732 ENSMUSP00000158394 TRANSLATION protein_coding start - - 132.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000062202 Btbd9 ENSMUST00000237078 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000237635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000235555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000237675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000235187 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000079924 ENSMUSP00000078845 TRANSLATION protein_coding - CCDS28599.1 1 612.0 3.0 11.83 10.6 240.4 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000062202 Btbd9 ENSMUST00000235431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000236825 ENSMUSP00000157736 TRANSLATION protein_coding stop - - 165.0 0.0 3.0 0.0 112.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000062202 Btbd9 ENSMUST00000235299 - NO_TRANSLATION retained_intron ENSMUSG00000062202 Btbd9 ENSMUST00000237164 ENSMUSP00000157439 TRANSLATION protein_coding start/stop - - 433.0 3.0 8.0 0.0 90.6 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000062202 Btbd9 ENSMUST00000236799 ENSMUSP00000157534 TRANSLATION protein_coding - - - 385.0 3.0 7.33 1.0 164.4 0.0 -4,-6 0.0174 5 4.44 MINOR ENSMUSG00000062202 Btbd9 ENSMUST00000236430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000236910 - NO_TRANSLATION retained_intron ENSMUSG00000062202 Btbd9 ENSMUST00000236233 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000236153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000235342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000237013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000168787 ENSMUSP00000127300 TRANSLATION protein_coding - CCDS28599.1 1 612.0 3.0 11.83 10.6 240.4 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000062202 Btbd9 ENSMUST00000237825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062202 Btbd9 ENSMUST00000236584 ENSMUSP00000157702 TRANSLATION protein_coding - - - 435.0 3.0 7.33 0.0 164.4 0.0 -4,-6 0.0 5 4.44 MINOR ENSMUSG00000062202 Btbd9 ENSMUST00000237048 ENSMUSP00000157449 TRANSLATION protein_coding - CCDS28599.1 - 612.0 3.0 11.83 10.6 240.4 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000062202 Btbd9 ENSMUST00000237037 ENSMUSP00000157719 TRANSLATION protein_coding stop - - 582.0 3.0 11.83 0.0 240.4 0.0 -4,-6 0.0327 5 -2.0 MINOR ENSMUSG00000062202 Btbd9 ENSMUST00000235587 ENSMUSP00000157721 TRANSLATION protein_coding - - - 391.0 3.0 8.0 0.0 76.0 0.0 -4,-7 0.0 3 3.0 MINOR ENSMUSG00000007564 Ppp2r1a ENSMUST00000173359 - NO_TRANSLATION retained_intron ENSMUSG00000007564 Ppp2r1a ENSMUST00000136975 - NO_TRANSLATION retained_intron ENSMUSG00000007564 Ppp2r1a ENSMUST00000147983 ENSMUSP00000133334 TRANSLATION protein_coding start/stop - 5 143.0 0.0 3.5 0.0 38.9 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000007564 Ppp2r1a ENSMUST00000173658 ENSMUSP00000133778 TRANSLATION nonsense_mediated_decay - - 5 88.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007564 Ppp2r1a ENSMUST00000007708 ENSMUSP00000007708 TRANSLATION protein_coding - CCDS28432.1 1 589.0 0.0 15.16 26.8 100.7 0.0 -4,-5 1.0 21 16.0 PRINCIPAL:1 ENSMUSG00000007564 Ppp2r1a ENSMUST00000139293 - NO_TRANSLATION retained_intron ENSMUSG00000007564 Ppp2r1a ENSMUST00000138971 - NO_TRANSLATION retained_intron ENSMUSG00000007564 Ppp2r1a ENSMUST00000231928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024083 Pja2 ENSMUST00000024888 ENSMUSP00000024888 TRANSLATION protein_coding - CCDS37675.1 5 707.0 8.0 2.5 8.7 39.0 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000024083 Pja2 ENSMUST00000172733 ENSMUSP00000133730 TRANSLATION protein_coding - CCDS37674.1 1 645.0 8.0 2.5 0.4 39.0 0.0 -4,-5 0.221 4 18.0 MINOR ENSMUSG00000024083 Pja2 ENSMUST00000232842 - NO_TRANSLATION retained_intron ENSMUSG00000024083 Pja2 ENSMUST00000172818 ENSMUSP00000134380 TRANSLATION protein_coding - CCDS37675.1 1 707.0 8.0 2.5 8.7 39.0 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000024083 Pja2 ENSMUST00000024889 ENSMUSP00000024889 TRANSLATION protein_coding - CCDS37674.1 1 645.0 8.0 2.5 0.4 39.0 0.0 -4,-5 0.221 4 18.0 MINOR ENSMUSG00000023908 Pkmyt1 ENSMUST00000233238 - NO_TRANSLATION retained_intron ENSMUSG00000023908 Pkmyt1 ENSMUST00000233812 - NO_TRANSLATION retained_intron ENSMUSG00000023908 Pkmyt1 ENSMUST00000232822 - NO_TRANSLATION retained_intron ENSMUSG00000023908 Pkmyt1 ENSMUST00000233954 - NO_TRANSLATION retained_intron ENSMUSG00000023908 Pkmyt1 ENSMUST00000024701 ENSMUSP00000024701 TRANSLATION protein_coding - CCDS28460.1 1 490.0 17.0 3.6 10.1 159.1 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000024132 Eci1 ENSMUST00000024946 ENSMUSP00000024946 TRANSLATION protein_coding - - 1 286.0 16.0 5.6 0.4 309.9 0.0 -4,0 0.2183 10 17.67 MINOR ENSMUSG00000024132 Eci1 ENSMUST00000234023 ENSMUSP00000157160 TRANSLATION protein_coding - - - 248.0 16.0 5.0 0.0 313.9 0.0 -4,-6 0.0148 10 16.71 MINOR ENSMUSG00000024132 Eci1 ENSMUST00000234150 ENSMUSP00000157319 TRANSLATION protein_coding stop - - 128.0 16.0 3.0 0.0 166.0 0.0 -4,-6 0.0005 2 -2.0 MINOR ENSMUSG00000024132 Eci1 ENSMUST00000234304 ENSMUSP00000157291 TRANSLATION protein_coding - CCDS28480.1 - 289.0 16.0 5.6 2.1 315.4 0.0 -4,0 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000024132 Eci1 ENSMUST00000234731 - NO_TRANSLATION retained_intron ENSMUSG00000024132 Eci1 ENSMUST00000234019 - NO_TRANSLATION retained_intron ENSMUSG00000024132 Eci1 ENSMUST00000235124 - NO_TRANSLATION retained_intron ENSMUSG00000033200 Tpsg1 ENSMUST00000162021 ENSMUSP00000125180 TRANSLATION protein_coding - - 5 165.0 11.0 2.098 0.0 89.0 2.0 -,- 0.0 - 6.318 MINOR ENSMUSG00000033200 Tpsg1 ENSMUST00000249745 ENSMUSP00000159909 TRANSLATION protein_coding - - - 112.0 11.0 0.85 0.0 63.1 2.0 -,- 0.0028 - 4.668 MINOR ENSMUSG00000033200 Tpsg1 ENSMUST00000249747 ENSMUSP00000159911 TRANSLATION protein_coding - - - 208.0 12.0 2.598 0.0 145.8 2.0 -,- 0.003 - 9.414 MINOR ENSMUSG00000033200 Tpsg1 ENSMUST00000160377 ENSMUSP00000124008 TRANSLATION protein_coding - - 1 208.0 12.0 2.598 0.0 145.8 2.0 -,- 0.003 - 9.414 MINOR ENSMUSG00000033200 Tpsg1 ENSMUST00000024999 ENSMUSP00000024999 TRANSLATION protein_coding - CCDS28518.1 1 311.0 13.0 4.273 0.1 222.0 2.0 -,- 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033200 Tpsg1 ENSMUST00000249746 ENSMUSP00000159910 TRANSLATION nonsense_mediated_decay - - - 100.0 1.0 1.42375 0.0 61.8 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000033200 Tpsg1 ENSMUST00000160485 ENSMUSP00000124721 TRANSLATION protein_coding - - 3 208.0 12.0 2.598 0.0 145.8 2.0 -,- 0.003 - 9.414 MINOR ENSMUSG00000033200 Tpsg1 ENSMUST00000160920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055839 Elob ENSMUST00000233882 - NO_TRANSLATION retained_intron ENSMUSG00000055839 Elob ENSMUST00000233519 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055839 Elob ENSMUST00000232702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055839 Elob ENSMUST00000233857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055839 Elob ENSMUST00000233593 ENSMUSP00000156963 TRANSLATION nonsense_mediated_decay - - - 90.0 0.0 2.0 0.0 31.7 0.0 -4,-6 0.0012 5 -2.0 MINOR ENSMUSG00000055839 Elob ENSMUST00000069579 ENSMUSP00000066210 TRANSLATION protein_coding - CCDS57055.1 1 118.0 0.0 3.0 25.8 31.7 0.0 -4,-6 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000055839 Elob ENSMUST00000233796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055839 Elob ENSMUST00000233483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063576 Klhdc3 ENSMUST00000071841 ENSMUSP00000071743 TRANSLATION protein_coding - CCDS28834.1 1 382.0 0.0 4.239 34.2 168.5 0.0 -4,-1 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000063576 Klhdc3 ENSMUST00000233524 ENSMUSP00000156731 TRANSLATION protein_coding stop - - 104.0 0.0 1.3 0.0 36.5 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000063576 Klhdc3 ENSMUST00000165007 ENSMUSP00000128271 TRANSLATION protein_coding - CCDS28834.1 1 382.0 0.0 4.239 34.2 168.5 0.0 -4,-1 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000063576 Klhdc3 ENSMUST00000233733 ENSMUSP00000156682 TRANSLATION protein_coding - - - 373.0 0.0 4.14 0.0 168.5 0.0 -4,-1 0.0716 4 11.802 MINOR ENSMUSG00000063576 Klhdc3 ENSMUST00000232776 ENSMUSP00000156502 TRANSLATION protein_coding stop - - 238.0 0.0 2.65 0.0 135.9 0.0 -4,-1 0.0024 3 -2.0 MINOR ENSMUSG00000096140 Ankrd66 ENSMUST00000178772 ENSMUSP00000136879 TRANSLATION protein_coding - CCDS57095.1 5 192.0 0.0 3.0 3.3 58.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000047786 Lix1 ENSMUST00000115576 ENSMUSP00000111239 TRANSLATION protein_coding - CCDS37456.1 1 282.0 0.0 4.55 16.7 426.1 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000047786 Lix1 ENSMUST00000140134 ENSMUSP00000156223 TRANSLATION protein_coding - - 1 155.0 0.0 1.55 0.0 178.9 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000024292 Cyp4f14 ENSMUST00000234759 ENSMUSP00000157036 TRANSLATION protein_coding - CCDS28621.1 - 524.0 30.0 11.75 9.6 450.7 1.0 -1,-4 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000024292 Cyp4f14 ENSMUST00000179434 ENSMUSP00000136139 TRANSLATION protein_coding - CCDS28621.1 5 524.0 30.0 11.75 9.6 450.7 1.0 -1,-4 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000024292 Cyp4f14 ENSMUST00000054174 ENSMUSP00000050478 TRANSLATION protein_coding - CCDS28621.1 1 524.0 30.0 11.75 9.6 450.7 1.0 -1,-4 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000024292 Cyp4f14 ENSMUST00000235058 ENSMUSP00000157006 TRANSLATION protein_coding - CCDS28621.1 - 524.0 30.0 11.75 9.6 450.7 1.0 -1,-4 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000024292 Cyp4f14 ENSMUST00000234797 ENSMUSP00000157346 TRANSLATION protein_coding stop - - 159.0 5.0 3.25 0.0 53.7 1.0 -1,-4 0.0015 1 -2.0 MINOR ENSMUSG00000024292 Cyp4f14 ENSMUST00000234538 ENSMUSP00000157156 TRANSLATION protein_coding stop - - 243.0 6.0 5.5 0.0 109.8 1.0 -1,-4 0.0015 2 -2.0 MINOR ENSMUSG00000091805 Vmn2r108 ENSMUST00000167314 ENSMUSP00000130373 TRANSLATION protein_coding - CCDS49986.1 5 855.0 4.0 3.768 0.1 381.5 9.0 3,-2 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000091805 Vmn2r108 ENSMUST00000233572 ENSMUSP00000156635 TRANSLATION protein_coding - - - 533.0 0.0 2.038 0.0 122.9 0.0 3,-2 0.0006 - 2.538 MINOR ENSMUSG00000091805 Vmn2r108 ENSMUST00000233143 ENSMUSP00000156637 TRANSLATION nonsense_mediated_decay - - - 173.0 0.0 0.76 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000091805 Vmn2r108 ENSMUST00000233382 ENSMUSP00000156802 TRANSLATION protein_coding - - - 783.0 4.0 3.09 0.0 375.8 9.0 3,-2 0.0776 - 10.644 MINOR ENSMUSG00000091805 Vmn2r108 ENSMUST00000232850 ENSMUSP00000156389 TRANSLATION protein_coding - - - 819.0 4.0 3.57 0.0 376.9 9.0 3,-2 0.1191 - 11.604 ALTERNATIVE:2 ENSMUSG00000091805 Vmn2r108 ENSMUST00000233830 ENSMUSP00000156499 TRANSLATION protein_coding - - - 497.0 0.0 1.84 0.0 120.3 0.0 3,-2 0.0006 - 2.142 MINOR ENSMUSG00000091805 Vmn2r108 ENSMUST00000232949 ENSMUSP00000156816 TRANSLATION nonsense_mediated_decay - - - 173.0 0.0 0.76 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000091805 Vmn2r108 ENSMUST00000233388 ENSMUSP00000156935 TRANSLATION nonsense_mediated_decay - - - 173.0 0.0 0.76 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000079563 Pglyrp2 ENSMUST00000114455 ENSMUSP00000110099 TRANSLATION protein_coding - - 1 518.0 1.0 2.12 0.0 0.0 0.0 3,-2 0.0422 5 4.341 MINOR ENSMUSG00000079563 Pglyrp2 ENSMUST00000235892 ENSMUSP00000158250 TRANSLATION protein_coding - - - 480.0 3.0 2.97 0.0 48.6 0.0 3,-2 0.0992 3 10.04 ALTERNATIVE:2 ENSMUSG00000079563 Pglyrp2 ENSMUST00000237082 ENSMUSP00000157928 TRANSLATION nonsense_mediated_decay - - - 388.0 0.0 1.08 0.0 0.0 0.0 3,-2 0.0018 4 -2.0 MINOR ENSMUSG00000079563 Pglyrp2 ENSMUST00000170392 ENSMUSP00000129964 TRANSLATION protein_coding - CCDS37557.1 1 530.0 3.0 3.45 0.4 48.6 0.0 3,-2 1.0 5 11.0 PRINCIPAL:2 ENSMUSG00000079563 Pglyrp2 ENSMUST00000237130 ENSMUSP00000157771 TRANSLATION protein_coding - - - 450.0 1.0 2.45 0.0 0.0 0.0 3,-2 0.0051 5 5.001 MINOR ENSMUSG00000079563 Pglyrp2 ENSMUST00000237165 ENSMUSP00000157711 TRANSLATION protein_coding - - - 415.0 0.0 1.08 0.0 0.0 0.0 3,-2 0.0018 4 1.26 MINOR ENSMUSG00000079563 Pglyrp2 ENSMUST00000236386 ENSMUSP00000158365 TRANSLATION protein_coding - CCDS37557.1 - 530.0 3.0 3.45 0.4 48.6 0.0 3,-2 1.0 5 11.0 PRINCIPAL:2 ENSMUSG00000079563 Pglyrp2 ENSMUST00000236703 - NO_TRANSLATION retained_intron ENSMUSG00000096697 Esp23 ENSMUST00000178532 ENSMUSP00000136827 TRANSLATION protein_coding - CCDS57087.1 1 104.0 0.0 0.0 0.0 33.8 0.0 3,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000024050 Wiz ENSMUST00000172216 - NO_TRANSLATION retained_intron ENSMUSG00000024050 Wiz ENSMUST00000165912 ENSMUSP00000127651 TRANSLATION protein_coding stop - 3 189.0 6.0 0.0 0.0 0.0 0.0 -4,-5 0.0247 2 -2.0 MINOR ENSMUSG00000024050 Wiz ENSMUST00000170603 ENSMUSP00000128241 TRANSLATION protein_coding stop - 3 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0343 - -2.0 MINOR ENSMUSG00000024050 Wiz ENSMUST00000236409 ENSMUSP00000158082 TRANSLATION protein_coding - - - 1685.0 34.0 0.0 0.0 0.0 0.0 -4,-5 0.7279 11 6.0 PRINCIPAL:1 ENSMUSG00000024050 Wiz ENSMUST00000163107 ENSMUSP00000127943 TRANSLATION nonsense_mediated_decay - - 1 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0278 - -2.0 MINOR ENSMUSG00000024050 Wiz ENSMUST00000170617 ENSMUSP00000130517 TRANSLATION nonsense_mediated_decay - - 5 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0278 - -2.0 MINOR ENSMUSG00000024050 Wiz ENSMUST00000169741 - NO_TRANSLATION retained_intron ENSMUSG00000024050 Wiz ENSMUST00000064694 ENSMUSP00000069443 TRANSLATION protein_coding - CCDS28617.2 1 956.0 16.0 0.0 1.5 0.0 0.0 -4,-5 0.2902 13 1.0 MINOR ENSMUSG00000024050 Wiz ENSMUST00000087703 ENSMUSP00000084993 TRANSLATION protein_coding - CCDS28616.1 1 955.0 16.0 0.0 1.5 0.0 0.0 -4,-5 0.2902 12 1.0 MINOR ENSMUSG00000024050 Wiz ENSMUST00000169488 ENSMUSP00000126253 TRANSLATION protein_coding - - 5 1059.0 12.0 0.0 1.2 0.0 0.0 -4,-2 0.231 16 0.4 MINOR ENSMUSG00000024050 Wiz ENSMUST00000238144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024050 Wiz ENSMUST00000171728 ENSMUSP00000130054 TRANSLATION nonsense_mediated_decay - - 5 119.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0223 - -2.0 MINOR ENSMUSG00000024050 Wiz ENSMUST00000169280 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024050 Wiz ENSMUST00000087699 - NO_TRANSLATION retained_intron ENSMUSG00000023266 Frs3 ENSMUST00000138316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023266 Frs3 ENSMUST00000156118 ENSMUSP00000121698 TRANSLATION protein_coding stop - 3 36.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023266 Frs3 ENSMUST00000139405 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023266 Frs3 ENSMUST00000113296 ENSMUSP00000108921 TRANSLATION protein_coding - CCDS28854.1 1 492.0 0.0 3.25 8.5 90.4 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000023266 Frs3 ENSMUST00000128734 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006818 Sod2 ENSMUST00000233333 - NO_TRANSLATION retained_intron ENSMUSG00000006818 Sod2 ENSMUST00000233922 - NO_TRANSLATION retained_intron ENSMUSG00000006818 Sod2 ENSMUST00000007012 ENSMUSP00000007012 TRANSLATION protein_coding - CCDS28399.1 1 222.0 4.0 4.75 18.9 243.6 0.0 -4,-1 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000006818 Sod2 ENSMUST00000233451 ENSMUSP00000156792 TRANSLATION protein_coding stop - - 50.0 0.0 1.0 0.0 35.6 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000006818 Sod2 ENSMUST00000233897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006818 Sod2 ENSMUST00000233278 - NO_TRANSLATION retained_intron ENSMUSG00000006818 Sod2 ENSMUST00000232726 ENSMUSP00000156844 TRANSLATION nonsense_mediated_decay - - - 182.0 2.0 4.014 0.0 166.2 0.0 -4,-1 0.0 7 -2.0 MINOR ENSMUSG00000006818 Sod2 ENSMUST00000233791 - NO_TRANSLATION retained_intron ENSMUSG00000023921 Mmut ENSMUST00000169611 ENSMUSP00000130941 TRANSLATION protein_coding - CCDS37618.1 1 748.0 64.0 12.08 14.4 788.2 0.0 -4,-1 1.0 23 22.0 PRINCIPAL:1 ENSMUSG00000023921 Mmut ENSMUST00000233222 ENSMUSP00000156673 TRANSLATION protein_coding start - - 184.0 19.0 3.33 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000002257 Def6 ENSMUST00000233534 ENSMUSP00000156804 TRANSLATION protein_coding start/stop - - 129.0 0.0 2.3 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002257 Def6 ENSMUST00000233560 ENSMUSP00000156873 TRANSLATION protein_coding stop - - 180.0 3.0 4.58 0.0 25.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000002257 Def6 ENSMUST00000233264 ENSMUSP00000156702 TRANSLATION protein_coding start/stop - - 385.0 10.0 7.72 0.0 67.1 0.0 -4,-5 0.0189 9 -2.0 MINOR ENSMUSG00000002257 Def6 ENSMUST00000233170 ENSMUSP00000156601 TRANSLATION protein_coding - - - 257.0 3.0 3.5 0.0 0.0 0.0 -4,-6 0.0 5 1.332 MINOR ENSMUSG00000002257 Def6 ENSMUST00000233958 ENSMUSP00000156736 TRANSLATION protein_coding stop - - 56.0 0.0 1.46 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002257 Def6 ENSMUST00000002327 ENSMUSP00000002327 TRANSLATION protein_coding - CCDS28574.1 1 630.0 10.0 11.35 0.0 67.1 0.0 -4,-6 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000002257 Def6 ENSMUST00000146724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002257 Def6 ENSMUST00000233205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037689 Tmem247 ENSMUST00000042172 ENSMUSP00000039338 TRANSLATION protein_coding stop CCDS79579.1 1 211.0 0.0 1.0 0.1 386.5 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000037689 Tmem247 ENSMUST00000202221 ENSMUSP00000143825 TRANSLATION protein_coding start/stop - 2 123.0 0.0 1.0 0.0 231.1 0.0 -4,-5 0.0273 - -2.0 ALTERNATIVE:2 ENSMUSG00000024098 Twsg1 ENSMUST00000233663 ENSMUSP00000156938 TRANSLATION protein_coding start - - 41.0 0.0 0.0 0.0 73.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024098 Twsg1 ENSMUST00000233855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024098 Twsg1 ENSMUST00000024906 ENSMUSP00000024906 TRANSLATION protein_coding - CCDS28942.1 1 222.0 0.0 1.5 18.1 156.2 0.0 3,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000024098 Twsg1 ENSMUST00000233580 ENSMUSP00000156695 TRANSLATION protein_coding - CCDS28942.1 - 222.0 0.0 1.5 18.1 156.2 0.0 3,-2 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000055471 Alk ENSMUST00000086639 ENSMUSP00000083840 TRANSLATION protein_coding - CCDS37688.1 1 1621.0 19.0 8.75 0.1 395.1 0.0 1,-2 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000055471 Alk ENSMUST00000232804 - NO_TRANSLATION retained_intron ENSMUSG00000055471 Alk ENSMUST00000232891 - NO_TRANSLATION retained_intron ENSMUSG00000035521 Gnptg ENSMUST00000038973 ENSMUSP00000042073 TRANSLATION protein_coding - CCDS28511.1 1 307.0 0.0 0.0 4.5 30.2 0.0 1,-2 0.7391 6 2.0 ALTERNATIVE:1 ENSMUSG00000035521 Gnptg ENSMUST00000115154 ENSMUSP00000110807 TRANSLATION protein_coding - - 1 314.0 0.0 0.0 4.5 30.9 0.0 1,-2 0.7882 6 2.0 PRINCIPAL:4 ENSMUSG00000050612 Txndc2 ENSMUST00000233702 ENSMUSP00000156697 TRANSLATION protein_coding - - - 543.0 3.0 0.4 0.0 78.5 0.0 -4,-5 0.1993 5 11.0 ALTERNATIVE:2 ENSMUSG00000050612 Txndc2 ENSMUST00000050236 ENSMUSP00000054909 TRANSLATION protein_coding - CCDS50165.1 1 550.0 3.0 0.4 0.0 78.5 0.0 -4,-5 1.0 5 11.0 PRINCIPAL:2 ENSMUSG00000002274 Metrn ENSMUST00000237849 - NO_TRANSLATION retained_intron ENSMUSG00000002274 Metrn ENSMUST00000165838 ENSMUSP00000127275 TRANSLATION protein_coding - CCDS28529.1 1 291.0 0.0 0.0 0.0 0.0 0.0 2,-2 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000002274 Metrn ENSMUST00000235294 - NO_TRANSLATION retained_intron ENSMUSG00000002274 Metrn ENSMUST00000235925 ENSMUSP00000158455 TRANSLATION protein_coding - - - 89.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.1107 - 0.0 ALTERNATIVE:2 ENSMUSG00000002274 Metrn ENSMUST00000238040 ENSMUSP00000157829 TRANSLATION protein_coding - - - 221.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.1295 - 0.0 ALTERNATIVE:2 ENSMUSG00000002274 Metrn ENSMUST00000236963 ENSMUSP00000157474 TRANSLATION protein_coding - - - 285.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1435 - 0.0 ALTERNATIVE:2 ENSMUSG00000055602 Tcp10b ENSMUST00000086787 ENSMUSP00000083997 TRANSLATION protein_coding - CCDS28401.1 1 438.0 0.0 5.3 0.4 272.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000055602 Tcp10b ENSMUST00000116666 ENSMUSP00000112365 TRANSLATION protein_coding - CCDS28401.1 1 438.0 0.0 5.3 0.4 272.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000055602 Tcp10b ENSMUST00000233962 - NO_TRANSLATION retained_intron ENSMUSG00000055602 Tcp10b ENSMUST00000232990 ENSMUSP00000156627 TRANSLATION protein_coding - - - 391.0 0.0 4.3 0.1 206.2 0.0 -4,-5 0.0 1 6.024 MINOR ENSMUSG00000055602 Tcp10b ENSMUST00000233511 ENSMUSP00000156691 TRANSLATION protein_coding stop - - 107.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055602 Tcp10b ENSMUST00000163227 ENSMUSP00000128059 TRANSLATION protein_coding stop - 1 401.0 0.0 4.3 0.0 195.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057443 Or2n1e ENSMUST00000172843 ENSMUSP00000133698 TRANSLATION protein_coding - CCDS28779.1 2 312.0 0.0 1.0 9.9 157.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057443 Or2n1e ENSMUST00000173841 ENSMUSP00000133828 TRANSLATION protein_coding - CCDS28779.1 2 312.0 0.0 1.0 9.9 157.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057443 Or2n1e ENSMUST00000071871 ENSMUSP00000071767 TRANSLATION protein_coding - CCDS28779.1 - 312.0 0.0 1.0 9.9 157.5 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038045 Sult6b1 ENSMUST00000042683 ENSMUSP00000038282 TRANSLATION protein_coding - - 5 265.0 18.0 6.83 3.2 187.8 0.0 -4,-5 0.1293 - 17.622 MINOR ENSMUSG00000038045 Sult6b1 ENSMUST00000159710 ENSMUSP00000124309 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038045 Sult6b1 ENSMUST00000169544 ENSMUSP00000132823 TRANSLATION protein_coding - CCDS50182.1 5 303.0 18.0 7.33 15.1 187.8 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000038045 Sult6b1 ENSMUST00000146474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002660 Clpp ENSMUST00000233845 - NO_TRANSLATION retained_intron ENSMUSG00000002660 Clpp ENSMUST00000002735 ENSMUSP00000002735 TRANSLATION protein_coding - CCDS28920.1 1 272.0 0.0 4.75 3.9 268.3 0.0 -4,-1 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000032842 Abcc10 ENSMUST00000165733 - NO_TRANSLATION retained_intron ENSMUSG00000032842 Abcc10 ENSMUST00000167360 ENSMUSP00000131843 TRANSLATION protein_coding - CCDS50124.1 1 1501.0 31.0 11.585 3.1 367.1 19.0 -4,-7 1.0 13 14.802 PRINCIPAL:2 ENSMUSG00000032842 Abcc10 ENSMUST00000168490 ENSMUSP00000132760 TRANSLATION protein_coding stop - 3 245.0 16.0 3.162 0.0 69.8 3.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000032842 Abcc10 ENSMUST00000170168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032842 Abcc10 ENSMUST00000171584 ENSMUSP00000132561 TRANSLATION nonsense_mediated_decay - - 5 487.0 0.0 0.2 0.0 44.5 8.0 -4,-7 0.0042 3 -2.0 MINOR ENSMUSG00000032842 Abcc10 ENSMUST00000095261 ENSMUSP00000092895 TRANSLATION protein_coding - CCDS28825.1 1 1460.0 31.0 11.585 0.0 367.1 19.0 -4,-7 0.4023 13 13.802 ALTERNATIVE:2 ENSMUSG00000032842 Abcc10 ENSMUST00000047970 ENSMUSP00000038041 TRANSLATION protein_coding - CCDS84315.1 1 1526.0 31.0 11.684 0.0 363.7 19.0 -4,-7 0.333 13 13.2 MINOR ENSMUSG00000094083 Gm1604b ENSMUST00000097422 ENSMUSP00000095033 TRANSLATION protein_coding - CCDS28375.1 1 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000033966 Cdkl4 ENSMUST00000086545 ENSMUSP00000083732 TRANSLATION protein_coding - CCDS28992.1 1 342.0 19.0 7.0 19.7 275.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000033966 Cdkl4 ENSMUST00000234349 ENSMUSP00000157316 TRANSLATION protein_coding - CCDS28992.1 - 342.0 19.0 7.0 19.7 275.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000033966 Cdkl4 ENSMUST00000234602 ENSMUSP00000157063 TRANSLATION protein_coding - CCDS28992.1 - 342.0 19.0 7.0 19.7 275.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000036636 Clcn7 ENSMUST00000233633 ENSMUSP00000156968 TRANSLATION nonsense_mediated_decay - - - 391.0 0.0 8.865 0.0 163.7 7.0 -4,-5 0.0037 3 -2.0 MINOR ENSMUSG00000036636 Clcn7 ENSMUST00000040729 ENSMUSP00000035964 TRANSLATION protein_coding - CCDS28509.1 1 803.0 0.0 18.355 8.7 375.5 11.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000036636 Clcn7 ENSMUST00000160961 ENSMUSP00000124194 TRANSLATION protein_coding - CCDS84282.1 1 783.0 0.0 18.355 0.1 375.5 11.0 -4,-5 0.3122 4 12.0 MINOR ENSMUSG00000036636 Clcn7 ENSMUST00000162862 ENSMUSP00000124527 TRANSLATION protein_coding - - 5 860.0 0.0 17.605 0.0 374.1 11.0 -4,-5 0.0514 6 10.416 MINOR ENSMUSG00000036636 Clcn7 ENSMUST00000159426 - NO_TRANSLATION retained_intron ENSMUSG00000036636 Clcn7 ENSMUST00000162722 - NO_TRANSLATION retained_intron ENSMUSG00000036636 Clcn7 ENSMUST00000159773 ENSMUSP00000125546 TRANSLATION protein_coding start/stop - 5 202.0 0.0 5.83 0.0 109.5 4.0 -4,-6 0.0022 1 -2.0 MINOR ENSMUSG00000024247 Pkdcc ENSMUST00000166528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024247 Pkdcc ENSMUST00000168118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024247 Pkdcc ENSMUST00000170758 ENSMUSP00000131445 TRANSLATION protein_coding start/stop - 3 224.0 0.0 5.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024247 Pkdcc ENSMUST00000170794 ENSMUSP00000129238 TRANSLATION protein_coding - CCDS28994.2 1 492.0 0.0 6.5 0.0 30.7 0.0 -3,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000023944 Hsp90ab1 ENSMUST00000146770 - NO_TRANSLATION retained_intron ENSMUSG00000023944 Hsp90ab1 ENSMUST00000145205 - NO_TRANSLATION retained_intron ENSMUSG00000023944 Hsp90ab1 ENSMUST00000166469 ENSMUSP00000127338 TRANSLATION protein_coding stop - 5 189.0 1.0 2.13 0.0 268.3 0.0 -4,-5 0.0007 7 -2.0 MINOR ENSMUSG00000023944 Hsp90ab1 ENSMUST00000165127 ENSMUSP00000126239 TRANSLATION protein_coding stop - 5 161.0 2.0 4.08 0.0 180.5 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000023944 Hsp90ab1 ENSMUST00000130406 ENSMUSP00000119678 TRANSLATION protein_coding stop - 3 76.0 3.0 2.08 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023944 Hsp90ab1 ENSMUST00000024739 ENSMUSP00000024739 TRANSLATION protein_coding - CCDS28812.1 1 724.0 10.0 13.2 27.9 857.0 0.0 -4,-5 1.0 29 22.0 PRINCIPAL:1 ENSMUSG00000023944 Hsp90ab1 ENSMUST00000151306 - NO_TRANSLATION retained_intron ENSMUSG00000023944 Hsp90ab1 ENSMUST00000163966 ENSMUSP00000131601 TRANSLATION nonsense_mediated_decay - - 5 112.0 3.0 2.41 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000073423 Zfp414 ENSMUST00000172455 - NO_TRANSLATION retained_intron ENSMUSG00000073423 Zfp414 ENSMUST00000234535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073423 Zfp414 ENSMUST00000170225 ENSMUSP00000127118 TRANSLATION protein_coding stop - 3 229.0 10.0 0.6 0.0 190.9 0.0 -4,-5 0.0845 1 -2.0 MINOR ENSMUSG00000073423 Zfp414 ENSMUST00000073570 ENSMUSP00000073259 TRANSLATION protein_coding - CCDS37568.1 1 299.0 10.0 0.6 0.4 190.9 0.0 -4,-5 0.3473 1 14.0 ALTERNATIVE:2 ENSMUSG00000073423 Zfp414 ENSMUST00000166627 ENSMUSP00000129423 TRANSLATION protein_coding - - 1 250.0 10.0 0.6 0.0 190.9 0.0 -4,-5 0.7769 1 14.0 PRINCIPAL:2 ENSMUSG00000073423 Zfp414 ENSMUST00000165504 ENSMUSP00000130881 TRANSLATION protein_coding stop - 2 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073423 Zfp414 ENSMUST00000169781 - NO_TRANSLATION retained_intron ENSMUSG00000079507 H2-Q1 ENSMUST00000172994 - NO_TRANSLATION retained_intron ENSMUSG00000079507 H2-Q1 ENSMUST00000073208 ENSMUSP00000072942 TRANSLATION protein_coding - CCDS50086.1 1 368.0 0.0 3.33 0.0 390.1 1.0 2,-3 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000079507 H2-Q1 ENSMUST00000105041 ENSMUSP00000100662 TRANSLATION protein_coding - - 1 341.0 0.0 3.33 0.0 348.1 1.0 2,-3 0.0906 2 9.48 MINOR ENSMUSG00000038545 Cul7 ENSMUST00000145567 ENSMUSP00000116133 TRANSLATION nonsense_mediated_decay - - 1 649.0 0.0 1.6 0.0 107.8 0.0 -4,-6 0.0023 4 -2.0 MINOR ENSMUSG00000038545 Cul7 ENSMUST00000133393 ENSMUSP00000119393 TRANSLATION nonsense_mediated_decay start - 5 577.0 3.0 1.6 0.0 107.8 0.0 -4,-7 0.0016 5 -2.0 MINOR ENSMUSG00000038545 Cul7 ENSMUST00000151002 - NO_TRANSLATION retained_intron ENSMUSG00000038545 Cul7 ENSMUST00000132790 - NO_TRANSLATION retained_intron ENSMUSG00000038545 Cul7 ENSMUST00000125949 - NO_TRANSLATION retained_intron ENSMUSG00000038545 Cul7 ENSMUST00000144966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038545 Cul7 ENSMUST00000043464 ENSMUSP00000049128 TRANSLATION protein_coding - CCDS28833.1 1 1689.0 3.0 1.866 0.0 216.8 0.0 -4,-6 1.0 22 15.0 PRINCIPAL:1 ENSMUSG00000035051 Dhx57 ENSMUST00000235024 - NO_TRANSLATION retained_intron ENSMUSG00000035051 Dhx57 ENSMUST00000086555 ENSMUSP00000083742 TRANSLATION protein_coding - CCDS50188.1 1 1388.0 8.0 11.702 1.1 317.6 0.0 -4,-5 1.0 20 15.0 PRINCIPAL:2 ENSMUSG00000035051 Dhx57 ENSMUST00000234733 - NO_TRANSLATION retained_intron ENSMUSG00000035051 Dhx57 ENSMUST00000234703 - NO_TRANSLATION retained_intron ENSMUSG00000035051 Dhx57 ENSMUST00000038166 ENSMUSP00000041069 TRANSLATION protein_coding - CCDS28990.1 1 1335.0 8.0 11.702 0.1 317.6 0.0 -4,-5 0.4833 19 14.0 ALTERNATIVE:2 ENSMUSG00000036568 Bicral ENSMUST00000233455 ENSMUSP00000156681 TRANSLATION protein_coding stop - - 162.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036568 Bicral ENSMUST00000233142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036568 Bicral ENSMUST00000233537 ENSMUSP00000156590 TRANSLATION protein_coding - CCDS50126.1 - 1074.0 0.0 3.0 0.0 102.4 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000036568 Bicral ENSMUST00000040624 ENSMUSP00000044833 TRANSLATION protein_coding - CCDS50126.1 1 1074.0 0.0 3.0 0.0 102.4 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000007039 Ddah2 ENSMUST00000174493 ENSMUSP00000134072 TRANSLATION protein_coding - CCDS57070.1 1 244.0 0.0 4.19 0.7 0.0 0.0 -4,-5 0.0895 10 3.672 MINOR ENSMUSG00000007039 Ddah2 ENSMUST00000173520 ENSMUSP00000134595 TRANSLATION protein_coding stop - 3 157.0 0.0 2.55 0.0 0.0 0.0 -4,-5 0.001 6 -2.0 MINOR ENSMUSG00000007039 Ddah2 ENSMUST00000007255 ENSMUSP00000007255 TRANSLATION protein_coding - CCDS50082.1 1 285.0 0.0 5.353 11.4 0.0 0.0 -4,-5 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000007039 Ddah2 ENSMUST00000173562 - NO_TRANSLATION retained_intron ENSMUSG00000071322 Tcp10a ENSMUST00000095726 ENSMUSP00000093394 TRANSLATION protein_coding - CCDS28377.1 1 438.0 0.0 5.7 0.4 270.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071322 Tcp10a ENSMUST00000140192 ENSMUSP00000117557 TRANSLATION protein_coding stop - 5 401.0 0.0 4.7 0.0 193.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071322 Tcp10a ENSMUST00000147803 ENSMUSP00000120513 TRANSLATION protein_coding stop - 5 6.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0116 - -2.0 MINOR ENSMUSG00000071322 Tcp10a ENSMUST00000138222 ENSMUSP00000115431 TRANSLATION protein_coding - - 5 420.0 0.0 5.1 0.0 270.5 0.0 -4,-5 0.044 - 10.8 MINOR ENSMUSG00000071322 Tcp10a ENSMUST00000128533 ENSMUSP00000114351 TRANSLATION protein_coding - CCDS28377.1 1 438.0 0.0 5.7 0.4 270.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071322 Tcp10a ENSMUST00000129709 ENSMUSP00000114830 TRANSLATION protein_coding - CCDS28377.1 1 438.0 0.0 5.7 0.4 270.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071322 Tcp10a ENSMUST00000144861 ENSMUSP00000122766 TRANSLATION protein_coding stop - 1 245.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059811 Atl2 ENSMUST00000221666 - NO_TRANSLATION retained_intron ENSMUSG00000059811 Atl2 ENSMUST00000222415 ENSMUSP00000152866 TRANSLATION protein_coding start - 3 87.0 0.0 1.0 0.0 0.0 4.0 -1,-5 0.0049 - -2.0 MINOR ENSMUSG00000059811 Atl2 ENSMUST00000112437 ENSMUSP00000108056 TRANSLATION protein_coding - CCDS37701.1 1 412.0 8.0 9.25 9.6 251.9 4.0 -4,-5 0.5316 8 4.338 MINOR ENSMUSG00000059811 Atl2 ENSMUST00000222243 - NO_TRANSLATION retained_intron ENSMUSG00000059811 Atl2 ENSMUST00000221286 - NO_TRANSLATION retained_intron ENSMUSG00000059811 Atl2 ENSMUST00000068282 ENSMUSP00000064758 TRANSLATION protein_coding - CCDS37700.1 1 583.0 20.0 11.58 7.8 366.8 4.0 -4,-7 1.0 13 20.373 PRINCIPAL:1 ENSMUSG00000059811 Atl2 ENSMUST00000223273 - NO_TRANSLATION retained_intron ENSMUSG00000059811 Atl2 ENSMUST00000222193 ENSMUSP00000152340 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000094891 Or10h1b ENSMUST00000214888 ENSMUSP00000153803 TRANSLATION protein_coding - - 5 319.0 0.0 1.12 0.0 179.1 9.0 -4,-6 0.104 - 10.2 MINOR ENSMUSG00000094891 Or10h1b ENSMUST00000216633 ENSMUSP00000150511 TRANSLATION protein_coding - CCDS50064.1 5 315.0 0.0 1.6 10.7 179.1 9.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094891 Or10h1b ENSMUST00000214891 ENSMUSP00000153707 TRANSLATION protein_coding - - 5 319.0 0.0 1.12 0.0 179.1 9.0 -4,-6 0.104 - 10.2 MINOR ENSMUSG00000094891 Or10h1b ENSMUST00000112168 ENSMUSP00000111680 TRANSLATION protein_coding - CCDS50064.1 - 315.0 0.0 1.6 10.7 179.1 9.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000023967 Mrps18a ENSMUST00000123646 ENSMUSP00000122433 TRANSLATION protein_coding - - 2 149.0 0.0 3.08 0.3 60.1 0.0 -2,2 0.063 1 10.002 MINOR ENSMUSG00000023967 Mrps18a ENSMUST00000024763 ENSMUSP00000024763 TRANSLATION protein_coding - CCDS28819.1 1 196.0 0.0 4.08 17.8 60.1 0.0 -2,2 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000023967 Mrps18a ENSMUST00000147672 - NO_TRANSLATION retained_intron ENSMUSG00000023967 Mrps18a ENSMUST00000134237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023967 Mrps18a ENSMUST00000131943 - NO_TRANSLATION retained_intron ENSMUSG00000023967 Mrps18a ENSMUST00000146255 - NO_TRANSLATION retained_intron ENSMUSG00000055660 Mettl4 ENSMUST00000234990 ENSMUSP00000157180 TRANSLATION protein_coding - CCDS29030.1 - 471.0 0.0 1.279 7.9 136.7 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000055660 Mettl4 ENSMUST00000171284 ENSMUSP00000127142 TRANSLATION protein_coding - - 1 450.0 0.0 1.279 0.0 136.7 0.0 -4,-6 0.1047 3 12.0 MINOR ENSMUSG00000055660 Mettl4 ENSMUST00000234593 - NO_TRANSLATION retained_intron ENSMUSG00000019579 Mydgf ENSMUST00000151093 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019579 Mydgf ENSMUST00000140885 - NO_TRANSLATION retained_intron ENSMUSG00000019579 Mydgf ENSMUST00000019723 ENSMUSP00000019723 TRANSLATION protein_coding - CCDS28898.1 1 166.0 0.0 4.3 5.8 260.7 0.0 3,-2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000038781 Stap2 ENSMUST00000233494 - NO_TRANSLATION retained_intron ENSMUSG00000038781 Stap2 ENSMUST00000043785 ENSMUSP00000038130 TRANSLATION protein_coding - CCDS28889.1 1 411.0 0.0 4.675 6.1 0.0 0.0 -4,-7 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000038781 Stap2 ENSMUST00000233528 - NO_TRANSLATION retained_intron ENSMUSG00000038781 Stap2 ENSMUST00000233977 - NO_TRANSLATION retained_intron ENSMUSG00000023971 Rrp36 ENSMUST00000024766 ENSMUSP00000024766 TRANSLATION protein_coding - CCDS37639.1 1 226.0 0.0 4.25 0.0 164.0 0.0 -4,-5 0.1683 4 8.0 ALTERNATIVE:2 ENSMUSG00000023971 Rrp36 ENSMUST00000232697 ENSMUSP00000156793 TRANSLATION protein_coding stop - - 179.0 0.0 2.25 0.0 49.3 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000023971 Rrp36 ENSMUST00000233155 - NO_TRANSLATION retained_intron ENSMUSG00000023971 Rrp36 ENSMUST00000233247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023971 Rrp36 ENSMUST00000233136 ENSMUSP00000156646 TRANSLATION protein_coding - - - 244.0 0.0 4.25 3.3 164.0 0.0 -4,-7 1.0 4 9.0 PRINCIPAL:2 ENSMUSG00000002076 Hsf2bp ENSMUST00000236321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002076 Hsf2bp ENSMUST00000237527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002076 Hsf2bp ENSMUST00000002145 ENSMUSP00000002145 TRANSLATION protein_coding - CCDS50056.1 1 338.0 0.0 0.0 3.6 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000002076 Hsf2bp ENSMUST00000138172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002076 Hsf2bp ENSMUST00000133308 ENSMUSP00000115909 TRANSLATION protein_coding - - 3 263.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0291 - 0.0 ALTERNATIVE:2 ENSMUSG00000002076 Hsf2bp ENSMUST00000238192 ENSMUSP00000157466 TRANSLATION protein_coding - CCDS50056.1 - 338.0 0.0 0.0 3.6 0.0 0.0 -4,-5 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000023953 Polh ENSMUST00000233924 - NO_TRANSLATION retained_intron ENSMUSG00000023953 Polh ENSMUST00000024749 ENSMUSP00000024749 TRANSLATION protein_coding - CCDS28822.1 1 694.0 15.0 9.08 0.4 209.6 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000023953 Polh ENSMUST00000233438 ENSMUSP00000156401 TRANSLATION nonsense_mediated_decay - - - 102.0 11.0 2.132 0.0 88.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000033739 Fkbpl ENSMUST00000036720 ENSMUSP00000037273 TRANSLATION protein_coding - CCDS28654.1 1 347.0 0.0 1.0 7.6 52.8 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000033739 Fkbpl ENSMUST00000174796 ENSMUSP00000133960 TRANSLATION protein_coding stop - 3 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000094441 Zfp955a ENSMUST00000008830 ENSMUSP00000008830 TRANSLATION protein_coding - CCDS50066.1 1 545.0 44.0 1.172 0.0 186.8 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000045761 Togaram2 ENSMUST00000122869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045761 Togaram2 ENSMUST00000153445 ENSMUSP00000122691 TRANSLATION protein_coding - CCDS28961.2 5 1002.0 0.0 0.0 0.0 64.5 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000045761 Togaram2 ENSMUST00000129072 - NO_TRANSLATION retained_intron ENSMUSG00000045761 Togaram2 ENSMUST00000097284 ENSMUSP00000094886 TRANSLATION protein_coding - CCDS28961.2 1 1002.0 0.0 0.0 0.0 64.5 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000045761 Togaram2 ENSMUST00000144479 ENSMUSP00000114359 TRANSLATION protein_coding start - 1 1022.0 0.0 0.0 0.0 64.5 0.0 -4,-2 0.3119 1 -2.0 MINOR ENSMUSG00000024039 Cbs ENSMUST00000128351 ENSMUSP00000158148 TRANSLATION protein_coding start/stop - 3 252.0 19.0 7.26 0.0 167.2 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000024039 Cbs ENSMUST00000235180 - NO_TRANSLATION retained_intron ENSMUSG00000024039 Cbs ENSMUST00000135425 ENSMUSP00000118785 TRANSLATION protein_coding stop - 5 174.0 12.0 3.66 0.0 95.2 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000024039 Cbs ENSMUST00000067801 ENSMUSP00000066878 TRANSLATION protein_coding - CCDS28609.1 1 561.0 29.0 14.82 3.0 253.7 0.0 -4,-5 1.0 17 14.952 PRINCIPAL:3 ENSMUSG00000024039 Cbs ENSMUST00000151718 ENSMUSP00000117454 TRANSLATION protein_coding stop - 5 179.0 12.0 3.66 0.0 98.6 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000024039 Cbs ENSMUST00000118504 ENSMUSP00000113209 TRANSLATION protein_coding - CCDS28610.1 1 547.0 29.0 14.57 3.1 253.7 0.0 -4,-5 0.8961 16 14.502 ALTERNATIVE:2 ENSMUSG00000024039 Cbs ENSMUST00000155814 ENSMUSP00000118472 TRANSLATION protein_coding stop - 3 193.0 12.0 4.49 0.0 114.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000024039 Cbs ENSMUST00000143982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024039 Cbs ENSMUST00000236853 ENSMUSP00000158269 TRANSLATION protein_coding - CCDS28609.1 - 561.0 29.0 14.82 3.0 253.7 0.0 -4,-5 1.0 17 14.952 PRINCIPAL:3 ENSMUSG00000024039 Cbs ENSMUST00000078509 ENSMUSP00000077597 TRANSLATION protein_coding - CCDS28610.1 1 547.0 29.0 14.57 3.1 253.7 0.0 -4,-5 0.8961 16 14.502 ALTERNATIVE:2 ENSMUSG00000024039 Cbs ENSMUST00000151597 - NO_TRANSLATION retained_intron ENSMUSG00000024039 Cbs ENSMUST00000236909 ENSMUSP00000158373 TRANSLATION protein_coding stop - - 75.0 7.0 0.83 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000019487 Trip10 ENSMUST00000224885 ENSMUSP00000153576 TRANSLATION protein_coding - - - 602.0 0.0 11.13 7.2 92.9 0.0 -4,-5 0.6385 25 10.001 ALTERNATIVE:1 ENSMUSG00000019487 Trip10 ENSMUST00000225664 ENSMUSP00000153606 TRANSLATION nonsense_mediated_decay - - - 41.0 0.0 0.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000019487 Trip10 ENSMUST00000224152 ENSMUSP00000153081 TRANSLATION protein_coding - - - 603.0 0.0 11.13 8.3 92.9 0.0 -4,-5 0.7048 25 10.355 ALTERNATIVE:1 ENSMUSG00000019487 Trip10 ENSMUST00000225523 - NO_TRANSLATION retained_intron ENSMUSG00000019487 Trip10 ENSMUST00000224261 - NO_TRANSLATION retained_intron ENSMUSG00000019487 Trip10 ENSMUST00000019631 ENSMUSP00000019631 TRANSLATION protein_coding - - 1 546.0 0.0 11.13 10.3 92.9 0.0 -4,-5 0.8806 22 11.0 ALTERNATIVE:1 ENSMUSG00000019487 Trip10 ENSMUST00000224947 ENSMUSP00000153467 TRANSLATION protein_coding - CCDS28930.1 - 547.0 0.0 11.13 8.1 92.9 0.0 -4,-5 1.0 22 10.289 PRINCIPAL:4 ENSMUSG00000019487 Trip10 ENSMUST00000224904 - NO_TRANSLATION retained_intron ENSMUSG00000019487 Trip10 ENSMUST00000224586 - NO_TRANSLATION retained_intron ENSMUSG00000024118 Tedc2 ENSMUST00000124557 ENSMUSP00000119405 TRANSLATION nonsense_mediated_decay start - 5 94.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000024118 Tedc2 ENSMUST00000137648 - NO_TRANSLATION retained_intron ENSMUSG00000024118 Tedc2 ENSMUST00000138818 - NO_TRANSLATION retained_intron ENSMUSG00000024118 Tedc2 ENSMUST00000024930 ENSMUSP00000024930 TRANSLATION protein_coding - CCDS28479.1 1 436.0 0.0 0.0 0.4 469.6 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000024118 Tedc2 ENSMUST00000149916 - NO_TRANSLATION retained_intron ENSMUSG00000024082 Ndufaf7 ENSMUST00000233138 - NO_TRANSLATION retained_intron ENSMUSG00000024082 Ndufaf7 ENSMUST00000233168 - NO_TRANSLATION retained_intron ENSMUSG00000024082 Ndufaf7 ENSMUST00000233787 - NO_TRANSLATION retained_intron ENSMUSG00000024082 Ndufaf7 ENSMUST00000232821 - NO_TRANSLATION retained_intron ENSMUSG00000024082 Ndufaf7 ENSMUST00000233935 ENSMUSP00000156809 TRANSLATION protein_coding start - - 117.0 0.0 1.83 0.0 64.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024082 Ndufaf7 ENSMUST00000024887 ENSMUSP00000024887 TRANSLATION protein_coding - CCDS28982.1 1 436.0 11.0 4.999 2.1 241.1 0.0 -4,0 1.0 10 15.0 PRINCIPAL:2 ENSMUSG00000024082 Ndufaf7 ENSMUST00000233068 ENSMUSP00000156412 TRANSLATION protein_coding - - - 383.0 11.0 4.999 0.0 241.1 0.0 -4,0 0.0738 9 14.0 ALTERNATIVE:2 ENSMUSG00000024082 Ndufaf7 ENSMUST00000233777 ENSMUSP00000156899 TRANSLATION protein_coding stop - - 288.0 11.0 3.67 0.0 170.6 0.0 -4,0 0.001 6 -2.0 MINOR ENSMUSG00000095658 Vmn2r130 ENSMUST00000175853 ENSMUSP00000135186 TRANSLATION protein_coding - - 5 855.0 0.0 2.4 0.1 370.3 0.0 4,-1 0.9034 - 12.0 PRINCIPAL:1 ENSMUSG00000094928 1700122O11Rik ENSMUST00000178823 ENSMUSP00000137519 TRANSLATION protein_coding - CCDS57099.1 1 241.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.8892 - 0.0 PRINCIPAL:1 ENSMUSG00000024018 Ccdc167 ENSMUST00000128751 ENSMUSP00000123612 TRANSLATION protein_coding - CCDS50051.1 1 97.0 0.0 2.58 13.5 112.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000024018 Ccdc167 ENSMUST00000234438 - NO_TRANSLATION retained_intron ENSMUSG00000024018 Ccdc167 ENSMUST00000129091 ENSMUSP00000116591 TRANSLATION protein_coding - CCDS50052.1 1 104.0 0.0 2.58 0.0 112.9 0.0 -4,-5 0.1313 2 12.0 MINOR ENSMUSG00000024018 Ccdc167 ENSMUST00000131807 ENSMUSP00000120238 TRANSLATION nonsense_mediated_decay start - 3 50.0 0.0 1.0 0.0 47.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024018 Ccdc167 ENSMUST00000137079 ENSMUSP00000115603 TRANSLATION nonsense_mediated_decay - - 3 54.0 0.0 1.0 0.0 47.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024018 Ccdc167 ENSMUST00000123502 ENSMUSP00000119013 TRANSLATION nonsense_mediated_decay - - 1 96.0 0.0 2.48 13.5 104.7 0.0 -4,-5 0.7914 2 -2.0 MINOR ENSMUSG00000024018 Ccdc167 ENSMUST00000174437 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000116988 Gm49673 ENSMUST00000232307 ENSMUSP00000156372 TRANSLATION nonsense_mediated_decay,RT - CCDS37433.1 - 259.0 6.0 4.75 1.1 204.8 0.0 1,-3 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000016206 H2-M3 ENSMUST00000038580 ENSMUSP00000035687 TRANSLATION protein_coding - CCDS37617.1 1 336.0 3.0 3.4 0.1 307.5 0.0 -2,-1 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000062753 Smim29 ENSMUST00000232276 ENSMUSP00000156204 TRANSLATION protein_coding - CCDS37521.1 - 102.0 0.0 2.705 16.8 0.0 1.0 -3,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000062753 Smim29 ENSMUST00000231948 ENSMUSP00000156342 TRANSLATION nonsense_mediated_decay - - - 49.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0097 - -2.0 MINOR ENSMUSG00000062753 Smim29 ENSMUST00000232203 ENSMUSP00000156365 TRANSLATION protein_coding - - - 89.0 0.0 2.205 2.0 0.0 1.0 -3,-7 0.0957 - 5.142 MINOR ENSMUSG00000062753 Smim29 ENSMUST00000080190 ENSMUSP00000079081 TRANSLATION nonsense_mediated_decay - - 3 53.0 0.0 0.75 0.0 0.0 1.0 -3,-7 0.0198 - -2.0 MINOR ENSMUSG00000062753 Smim29 ENSMUST00000138728 - NO_TRANSLATION retained_intron ENSMUSG00000062753 Smim29 ENSMUST00000231365 - NO_TRANSLATION retained_intron ENSMUSG00000062753 Smim29 ENSMUST00000231753 ENSMUSP00000156360 TRANSLATION protein_coding - - - 82.0 0.0 1.955 3.7 0.0 0.0 -4,-5 0.0897 - 5.022 MINOR ENSMUSG00000062753 Smim29 ENSMUST00000154473 ENSMUSP00000116199 TRANSLATION protein_coding - CCDS37521.1 1 102.0 0.0 2.705 16.8 0.0 1.0 -3,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000062753 Smim29 ENSMUST00000145183 ENSMUSP00000156249 TRANSLATION protein_coding - CCDS37521.1 3 102.0 0.0 2.705 16.8 0.0 1.0 -3,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000024033 Rsph1 ENSMUST00000236379 ENSMUSP00000157620 TRANSLATION protein_coding - - - 284.0 0.0 3.575 0.0 145.2 0.0 -4,-5 0.0603 7 11.598 MINOR ENSMUSG00000024033 Rsph1 ENSMUST00000024832 ENSMUSP00000024832 TRANSLATION protein_coding - CCDS28604.1 1 301.0 0.0 3.775 2.0 145.2 0.0 -4,-5 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000024033 Rsph1 ENSMUST00000235144 ENSMUSP00000158337 TRANSLATION protein_coding - - - 263.0 0.0 3.175 0.0 107.4 0.0 -4,-5 0.0012 6 8.532 MINOR ENSMUSG00000091656 Vmn2r106 ENSMUST00000240716 ENSMUSP00000159509 TRANSLATION protein_coding - - - 858.0 4.0 3.52 0.1 384.2 8.0 3,-2 0.8185 - 12.0 ALTERNATIVE:2 ENSMUSG00000091656 Vmn2r106 ENSMUST00000233933 ENSMUSP00000156688 TRANSLATION protein_coding - - - 690.0 4.0 3.32 0.0 354.1 8.0 3,-2 0.0528 - 11.598 MINOR ENSMUSG00000091656 Vmn2r106 ENSMUST00000233061 ENSMUSP00000156586 TRANSLATION protein_coding - - - 806.0 4.0 2.92 0.0 359.4 8.0 3,-2 0.0404 - 10.8 MINOR ENSMUSG00000091656 Vmn2r106 ENSMUST00000167464 ENSMUSP00000126534 TRANSLATION protein_coding - CCDS49983.1 5 862.0 4.0 3.52 0.1 385.6 8.0 3,-2 0.9868 - 12.0 PRINCIPAL:4 ENSMUSG00000071068 Treml2 ENSMUST00000170941 ENSMUSP00000128215 TRANSLATION protein_coding - - 1 270.0 0.0 1.0 0.0 31.7 1.0 3,-2 0.8381 1 8.0 PRINCIPAL:4 ENSMUSG00000071068 Treml2 ENSMUST00000233092 ENSMUSP00000156527 TRANSLATION protein_coding - CCDS37646.1 - 329.0 0.0 1.0 0.0 31.7 1.0 3,-2 0.6122 1 8.0 ALTERNATIVE:2 ENSMUSG00000071068 Treml2 ENSMUST00000233496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071068 Treml2 ENSMUST00000233602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091206 Vmn2r91 ENSMUST00000172359 ENSMUSP00000127465 TRANSLATION protein_coding - CCDS49969.1 5 856.0 5.0 2.29 0.0 395.2 6.0 2,-3 1.0 - 13.0 PRINCIPAL:2 ENSMUSG00000091206 Vmn2r91 ENSMUST00000240707 ENSMUSP00000159500 TRANSLATION protein_coding - - - 855.0 5.0 2.14 0.0 395.8 6.0 2,-3 0.6688 - 12.604 ALTERNATIVE:2 ENSMUSG00000054142 Vmn1r236 ENSMUST00000235320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054142 Vmn1r236 ENSMUST00000235527 ENSMUSP00000158530 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.8 104.8 8.0 -2,-5 0.7405 - 2.0 PRINCIPAL:2 ENSMUSG00000054142 Vmn1r236 ENSMUST00000066998 ENSMUSP00000064103 TRANSLATION protein_coding - CCDS28437.1 - 334.0 0.0 0.0 0.0 104.8 8.0 -4,-5 0.284 - 2.0 ALTERNATIVE:2 ENSMUSG00000054142 Vmn1r236 ENSMUST00000236535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054142 Vmn1r236 ENSMUST00000236545 ENSMUSP00000158319 TRANSLATION protein_coding - - - 304.0 0.0 0.0 0.8 104.8 8.0 -2,-5 0.7405 - 2.0 PRINCIPAL:2 ENSMUSG00000024228 Nudt12 ENSMUST00000025065 ENSMUSP00000025065 TRANSLATION protein_coding - CCDS28933.1 1 462.0 4.0 4.9 21.2 176.3 0.0 -4,-6 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000024228 Nudt12 ENSMUST00000174108 - NO_TRANSLATION retained_intron ENSMUSG00000024228 Nudt12 ENSMUST00000174122 ENSMUSP00000133678 TRANSLATION protein_coding - - 1 367.0 4.0 3.1 0.0 115.3 0.0 -4,-6 0.0005 13 8.74 MINOR ENSMUSG00000117338 Gm49804 ENSMUST00000233710 ENSMUSP00000156878 TRANSLATION protein_coding,RT - - - 287.0 11.0 5.5 1.0 222.0 0.0 -4,-7 0.7274 - -2.0 PRINCIPAL:1 ENSMUSG00000024174 Pot1b ENSMUST00000086876 ENSMUSP00000084089 TRANSLATION protein_coding - CCDS50147.1 5 640.0 0.0 13.2 7.3 236.8 0.0 -4,-6 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000024174 Pot1b ENSMUST00000233301 - NO_TRANSLATION retained_intron ENSMUSG00000024174 Pot1b ENSMUST00000233802 ENSMUSP00000156762 TRANSLATION nonsense_mediated_decay - - - 352.0 0.0 6.2 0.0 236.8 0.0 -4,-6 0.0083 2 -2.0 MINOR ENSMUSG00000024174 Pot1b ENSMUST00000233557 ENSMUSP00000156507 TRANSLATION protein_coding stop - - 133.0 0.0 3.0 0.0 101.3 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024174 Pot1b ENSMUST00000233972 ENSMUSP00000156746 TRANSLATION protein_coding - - - 623.0 0.0 12.2 0.0 236.8 0.0 -4,-6 0.0492 2 10.002 MINOR ENSMUSG00000024393 Prrc2a ENSMUST00000172899 - NO_TRANSLATION retained_intron ENSMUSG00000024393 Prrc2a ENSMUST00000174386 - NO_TRANSLATION retained_intron ENSMUSG00000024393 Prrc2a ENSMUST00000025253 ENSMUSP00000025253 TRANSLATION protein_coding - CCDS37596.1 1 2158.0 0.0 0.0 0.0 240.8 0.0 -4,-5 1.0 46 6.0 PRINCIPAL:1 ENSMUSG00000024393 Prrc2a ENSMUST00000173558 - NO_TRANSLATION retained_intron ENSMUSG00000024393 Prrc2a ENSMUST00000174805 ENSMUSP00000133550 TRANSLATION protein_coding - - 1 2069.0 0.0 0.0 0.0 128.9 0.0 -4,-5 0.1035 43 0.0 MINOR ENSMUSG00000024393 Prrc2a ENSMUST00000172929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091259 Vmn2r110 ENSMUST00000169559 ENSMUSP00000129347 TRANSLATION protein_coding - CCDS49988.1 5 858.0 4.0 3.05 0.0 388.5 9.0 -1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091259 Vmn2r110 ENSMUST00000233630 ENSMUSP00000156414 TRANSLATION nonsense_mediated_decay - - - 78.0 0.0 0.2 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000091259 Vmn2r110 ENSMUST00000232904 ENSMUSP00000156608 TRANSLATION nonsense_mediated_decay - - - 78.0 0.0 0.2 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000091259 Vmn2r110 ENSMUST00000233022 ENSMUSP00000156560 TRANSLATION protein_coding - - - 837.0 4.0 2.6 0.0 351.5 9.0 -1,-4 0.0749 - 12.88 MINOR ENSMUSG00000002763 Pex6 ENSMUST00000002840 ENSMUSP00000002840 TRANSLATION protein_coding - CCDS28837.1 1 981.0 28.0 7.14 9.0 214.3 0.0 -4,-6 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000002763 Pex6 ENSMUST00000127897 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002763 Pex6 ENSMUST00000144964 - NO_TRANSLATION retained_intron ENSMUSG00000002763 Pex6 ENSMUST00000148872 - NO_TRANSLATION retained_intron ENSMUSG00000024099 Ndufv2 ENSMUST00000138847 ENSMUSP00000137940 TRANSLATION protein_coding stop - 2 59.0 2.0 1.75 0.0 91.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024099 Ndufv2 ENSMUST00000143987 ENSMUSP00000121557 TRANSLATION protein_coding - CCDS37679.1 1 248.0 7.0 6.625 19.3 219.7 0.0 -4,0 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000024099 Ndufv2 ENSMUST00000147484 ENSMUSP00000115317 TRANSLATION protein_coding stop - 5 29.0 0.0 0.75 0.0 40.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024099 Ndufv2 ENSMUST00000024909 ENSMUSP00000024909 TRANSLATION protein_coding - CCDS70836.1 1 152.0 7.0 4.5 0.0 179.4 0.0 -4,-5 0.0034 8 11.334 MINOR ENSMUSG00000091631 Vmn2r95 ENSMUST00000232464 ENSMUSP00000156383 TRANSLATION protein_coding - - - 773.0 4.0 1.966 0.0 370.9 5.0 3,-2 0.1121 - 11.322 ALTERNATIVE:2 ENSMUSG00000091631 Vmn2r95 ENSMUST00000232090 ENSMUSP00000156117 TRANSLATION protein_coding - CCDS49973.1 - 845.0 4.0 2.216 0.0 372.9 5.0 3,-2 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000091631 Vmn2r95 ENSMUST00000166327 ENSMUSP00000126106 TRANSLATION protein_coding - - 5 549.0 2.0 1.966 0.0 167.8 0.0 3,-2 0.0019 - 7.722 MINOR ENSMUSG00000024397 Aif1 ENSMUST00000173106 ENSMUSP00000134107 TRANSLATION protein_coding stop - 3 128.0 3.0 1.83 0.0 0.0 0.0 -4,-5 0.0041 1 -2.0 MINOR ENSMUSG00000024397 Aif1 ENSMUST00000172693 ENSMUSP00000134214 TRANSLATION protein_coding - CCDS28689.1 1 147.0 3.0 4.58 28.3 0.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000024397 Aif1 ENSMUST00000173324 ENSMUSP00000133709 TRANSLATION protein_coding - CCDS28689.1 1 147.0 3.0 4.58 28.3 0.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000024397 Aif1 ENSMUST00000025257 ENSMUSP00000025257 TRANSLATION protein_coding - CCDS28689.1 2 147.0 3.0 4.58 28.3 0.0 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000024397 Aif1 ENSMUST00000173281 - NO_TRANSLATION retained_intron ENSMUSG00000024397 Aif1 ENSMUST00000172679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024397 Aif1 ENSMUST00000174044 - NO_TRANSLATION retained_intron ENSMUSG00000096433 Zfp994 ENSMUST00000179996 ENSMUSP00000136105 TRANSLATION protein_coding - CCDS57054.1 5 661.0 68.0 1.0 0.1 408.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039615 Stub1 ENSMUST00000236565 - NO_TRANSLATION retained_intron ENSMUSG00000039615 Stub1 ENSMUST00000235484 - NO_TRANSLATION retained_intron ENSMUSG00000039615 Stub1 ENSMUST00000237186 ENSMUSP00000158532 TRANSLATION protein_coding - - - 277.0 0.0 5.55 0.0 149.7 0.0 -4,-1 0.0072 14 10.488 MINOR ENSMUSG00000039615 Stub1 ENSMUST00000236515 ENSMUSP00000157919 TRANSLATION protein_coding - - - 268.0 0.0 5.45 0.0 149.9 0.0 -4,-7 0.0047 14 10.296 MINOR ENSMUSG00000039615 Stub1 ENSMUST00000235572 - NO_TRANSLATION retained_intron ENSMUSG00000039615 Stub1 ENSMUST00000236361 ENSMUSP00000158435 TRANSLATION protein_coding - - - 268.0 0.0 5.45 0.0 149.9 0.0 -4,-7 0.0047 14 10.296 MINOR ENSMUSG00000039615 Stub1 ENSMUST00000044911 ENSMUSP00000040431 TRANSLATION protein_coding - CCDS28533.1 1 304.0 0.0 6.25 11.6 151.6 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000092244 Esp34 ENSMUST00000178654 ENSMUSP00000136619 TRANSLATION protein_coding - CCDS57084.1 1 83.0 0.0 0.0 0.0 40.8 0.0 3,-2 0.3278 - 0.0 ALTERNATIVE:2 ENSMUSG00000092244 Esp34 ENSMUST00000173055 ENSMUSP00000133675 TRANSLATION protein_coding - - 1 151.0 0.0 0.0 0.0 38.3 0.0 -4,-2 0.5733 - 0.0 PRINCIPAL:4 ENSMUSG00000071256 Zfp213 ENSMUST00000095606 ENSMUSP00000093266 TRANSLATION protein_coding - CCDS28449.1 1 468.0 20.0 1.0 0.4 261.9 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000024112 Cacna1h ENSMUST00000161035 ENSMUSP00000123906 TRANSLATION protein_coding - - 3 2338.0 0.0 17.002 0.0 829.5 15.0 -,- 0.2694 10 5.604 MINOR ENSMUSG00000024112 Cacna1h ENSMUST00000162820 - NO_TRANSLATION retained_intron ENSMUSG00000024112 Cacna1h ENSMUST00000159052 ENSMUSP00000159912 TRANSLATION protein_coding - - 1 121.0 0.0 0.0 0.0 0.0 0.0 -,- 0.0 2 0.0 MINOR ENSMUSG00000024112 Cacna1h ENSMUST00000249750 ENSMUSP00000159916 TRANSLATION protein_coding - - - 2382.0 0.0 17.752 0.0 867.3 16.0 -,- 0.4317 10 7.104 ALTERNATIVE:2 ENSMUSG00000024112 Cacna1h ENSMUST00000161658 ENSMUSP00000124883 TRANSLATION nonsense_mediated_decay start - 2 54.0 0.0 1.83 0.0 34.4 1.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000024112 Cacna1h ENSMUST00000159048 ENSMUSP00000123741 TRANSLATION protein_coding - - 1 2007.0 0.0 17.752 0.0 868.7 16.0 -,- 0.5075 6 7.604 ALTERNATIVE:2 ENSMUSG00000024112 Cacna1h ENSMUST00000249753 - NO_TRANSLATION retained_intron ENSMUSG00000024112 Cacna1h ENSMUST00000249751 ENSMUSP00000159917 TRANSLATION protein_coding - - - 2365.0 0.0 17.95 0.1 868.7 16.0 -,- 0.9768 10 8.0 ALTERNATIVE:2 ENSMUSG00000024112 Cacna1h ENSMUST00000249752 - NO_TRANSLATION retained_intron ENSMUSG00000024112 Cacna1h ENSMUST00000159623 ENSMUSP00000125664 TRANSLATION protein_coding - CCDS37501.1 5 2359.0 0.0 17.752 0.1 868.7 16.0 -,- 1.0 10 7.604 PRINCIPAL:4 ENSMUSG00000024112 Cacna1h ENSMUST00000159331 - NO_TRANSLATION retained_intron ENSMUSG00000024112 Cacna1h ENSMUST00000159610 ENSMUSP00000125541 TRANSLATION protein_coding - CCDS37501.1 1 2359.0 0.0 17.752 0.1 868.7 16.0 -,- 1.0 10 7.604 PRINCIPAL:4 ENSMUSG00000063188 Or1o1 ENSMUST00000215974 ENSMUSP00000149165 TRANSLATION protein_coding - CCDS28750.1 5 309.0 0.0 0.8 3.7 184.0 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000063188 Or1o1 ENSMUST00000216844 ENSMUSP00000148879 TRANSLATION protein_coding - CCDS28750.1 5 309.0 0.0 0.8 3.7 184.0 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000063188 Or1o1 ENSMUST00000077008 ENSMUSP00000076267 TRANSLATION protein_coding - CCDS28750.1 - 309.0 0.0 0.8 3.7 184.0 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000063188 Or1o1 ENSMUST00000215947 ENSMUSP00000149951 TRANSLATION protein_coding - CCDS28750.1 5 309.0 0.0 0.8 3.7 184.0 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000063188 Or1o1 ENSMUST00000215894 ENSMUSP00000149990 TRANSLATION protein_coding - CCDS28750.1 5 309.0 0.0 0.8 3.7 184.0 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000073402 Gm8909 ENSMUST00000040467 ENSMUSP00000036092 TRANSLATION protein_coding - CCDS37610.2 1 368.0 0.0 4.0 0.0 365.0 1.0 4,-1 1.0 2 8.0 PRINCIPAL:2 ENSMUSG00000073402 Gm8909 ENSMUST00000174693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073402 Gm8909 ENSMUST00000097335 ENSMUSP00000094947 TRANSLATION protein_coding - - 5 393.0 0.0 4.0 0.0 365.0 1.0 4,-1 0.1863 2 8.0 ALTERNATIVE:2 ENSMUSG00000073402 Gm8909 ENSMUST00000173625 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073402 Gm8909 ENSMUST00000173353 ENSMUSP00000133663 TRANSLATION protein_coding - - 5 396.0 0.0 4.0 0.0 365.0 1.0 4,-1 0.1859 2 8.0 ALTERNATIVE:2 ENSMUSG00000073406 H2-Bl ENSMUST00000185167 ENSMUSP00000139373 TRANSLATION nonsense_mediated_decay - - 1 57.0 0.0 0.75 0.0 0.0 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000073406 H2-Bl ENSMUST00000184850 - NO_TRANSLATION retained_intron ENSMUSG00000073406 H2-Bl ENSMUST00000183999 ENSMUSP00000139165 TRANSLATION protein_coding - - 1 89.0 0.0 2.55 0.0 0.0 1.0 4,-1 0.0086 - 0.0 MINOR ENSMUSG00000073406 H2-Bl ENSMUST00000183560 ENSMUSP00000138812 TRANSLATION protein_coding - - 1 75.0 0.0 2.05 0.0 0.0 1.0 4,-1 0.0086 - 0.0 MINOR ENSMUSG00000073406 H2-Bl ENSMUST00000184502 ENSMUSP00000139275 TRANSLATION protein_coding - - 1 257.0 0.0 6.13 0.0 282.9 1.0 3,-1 0.8075 - 12.0 PRINCIPAL:1 ENSMUSG00000073406 H2-Bl ENSMUST00000185087 ENSMUSP00000139166 TRANSLATION nonsense_mediated_decay - - 1 114.0 0.0 3.08 0.0 139.5 0.0 3,-1 0.0 - -2.0 MINOR ENSMUSG00000073406 H2-Bl ENSMUST00000192532 - NO_TRANSLATION protein_coding_LoF ENSMUSG00000073406 H2-Bl ENSMUST00000173080 - NO_TRANSLATION protein_coding_LoF ENSMUSG00000073406 H2-Bl ENSMUST00000195838 - NO_TRANSLATION protein_coding_LoF ENSMUSG00000073406 H2-Bl ENSMUST00000194244 - NO_TRANSLATION protein_coding_LoF ENSMUSG00000073406 H2-Bl ENSMUST00000195833 - NO_TRANSLATION protein_coding_LoF ENSMUSG00000067201 H2-M9 ENSMUST00000087165 ENSMUSP00000084409 TRANSLATION protein_coding - - 1 244.0 0.0 3.0 0.0 146.1 2.0 1,-3 0.0049 - 6.336 MINOR ENSMUSG00000067201 H2-M9 ENSMUST00000087167 ENSMUSP00000084411 TRANSLATION protein_coding - CCDS28724.1 1 342.0 0.0 4.066 0.1 205.0 2.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000023939 Mrpl14 ENSMUST00000024734 ENSMUSP00000024734 TRANSLATION protein_coding - CCDS28815.1 1 145.0 0.0 1.0 0.0 0.0 0.0 -2,2 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000023939 Mrpl14 ENSMUST00000148537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023939 Mrpl14 ENSMUST00000149040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019432 Ddx39b ENSMUST00000174164 - NO_TRANSLATION retained_intron ENSMUSG00000019432 Ddx39b ENSMUST00000174757 ENSMUSP00000133705 TRANSLATION protein_coding stop - 3 148.0 9.0 3.75 0.0 119.3 0.0 -3,-6 0.0 3 -2.0 MINOR ENSMUSG00000019432 Ddx39b ENSMUST00000173731 ENSMUSP00000133428 TRANSLATION protein_coding - CCDS28695.1 1 428.0 14.0 9.18 32.9 214.0 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000019432 Ddx39b ENSMUST00000172549 ENSMUSP00000134178 TRANSLATION protein_coding - CCDS28695.1 1 428.0 14.0 9.18 32.9 214.0 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000019432 Ddx39b ENSMUST00000174795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019432 Ddx39b ENSMUST00000068056 ENSMUSP00000070682 TRANSLATION protein_coding - CCDS28695.1 1 428.0 14.0 9.18 32.9 214.0 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000024137 E4f1 ENSMUST00000227241 - NO_TRANSLATION retained_intron ENSMUSG00000024137 E4f1 ENSMUST00000226754 ENSMUSP00000153746 TRANSLATION nonsense_mediated_decay - - - 586.0 18.0 4.2 0.0 73.8 0.0 -4,-6 0.0003 2 -2.0 MINOR ENSMUSG00000024137 E4f1 ENSMUST00000226654 ENSMUSP00000154556 TRANSLATION nonsense_mediated_decay - - - 427.0 15.0 4.2 0.0 76.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024137 E4f1 ENSMUST00000226941 ENSMUSP00000154444 TRANSLATION protein_coding - - - 684.0 37.0 6.43 0.0 132.7 0.0 -4,-6 0.0495 2 18.0 MINOR ENSMUSG00000024137 E4f1 ENSMUST00000056032 ENSMUSP00000062344 TRANSLATION protein_coding - CCDS28481.1 1 782.0 37.0 6.43 9.4 132.7 0.0 -4,-6 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000024137 E4f1 ENSMUST00000228882 ENSMUSP00000154438 TRANSLATION protein_coding start - - 675.0 31.0 5.43 0.0 111.4 0.0 -4,-5 0.0218 2 -2.0 MINOR ENSMUSG00000024137 E4f1 ENSMUST00000226743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024137 E4f1 ENSMUST00000227293 - NO_TRANSLATION retained_intron ENSMUSG00000014767 Tbp ENSMUST00000232661 - NO_TRANSLATION retained_intron ENSMUSG00000014767 Tbp ENSMUST00000014911 ENSMUSP00000014911 TRANSLATION protein_coding - CCDS37454.2 1 316.0 0.0 5.66 6.4 217.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000014767 Tbp ENSMUST00000149518 - NO_TRANSLATION retained_intron ENSMUSG00000014767 Tbp ENSMUST00000119879 ENSMUSP00000114007 TRANSLATION protein_coding stop - 5 250.0 0.0 3.58 0.0 110.6 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000014767 Tbp ENSMUST00000143924 ENSMUSP00000122696 TRANSLATION protein_coding stop - 5 148.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014767 Tbp ENSMUST00000162505 ENSMUSP00000124317 TRANSLATION protein_coding - CCDS37454.2 1 316.0 0.0 5.66 6.4 217.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000014767 Tbp ENSMUST00000155051 ENSMUSP00000117551 TRANSLATION protein_coding stop - 2 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014767 Tbp ENSMUST00000118001 ENSMUSP00000113999 TRANSLATION protein_coding - - 1 260.0 0.0 4.33 0.0 91.0 0.0 -4,-5 0.0 1 3.342 MINOR ENSMUSG00000014767 Tbp ENSMUST00000117593 ENSMUSP00000112794 TRANSLATION protein_coding - CCDS37454.2 1 316.0 0.0 5.66 6.4 217.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000014767 Tbp ENSMUST00000159197 ENSMUSP00000125691 TRANSLATION protein_coding stop - 3 128.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014767 Tbp ENSMUST00000147081 ENSMUSP00000120484 TRANSLATION protein_coding stop - 3 180.0 0.0 1.58 0.0 33.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000014767 Tbp ENSMUST00000153480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024201 Kdm4b ENSMUST00000141507 ENSMUSP00000116789 TRANSLATION protein_coding start - 1 544.0 6.0 5.605 0.0 180.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024201 Kdm4b ENSMUST00000025036 ENSMUSP00000025036 TRANSLATION protein_coding - CCDS28904.1 1 1086.0 21.0 12.905 0.3 378.6 0.0 -4,-5 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000024201 Kdm4b ENSMUST00000139679 ENSMUSP00000118089 TRANSLATION protein_coding stop - 3 208.0 8.0 4.0 0.0 94.8 0.0 -4,-5 0.0415 - -2.0 MINOR ENSMUSG00000024201 Kdm4b ENSMUST00000147489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024201 Kdm4b ENSMUST00000132363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024201 Kdm4b ENSMUST00000086835 ENSMUSP00000084045 TRANSLATION protein_coding - - 5 1021.0 21.0 11.405 0.0 378.6 0.0 -4,-5 0.1904 6 15.0 MINOR ENSMUSG00000023961 Enpp4 ENSMUST00000024757 ENSMUSP00000024757 TRANSLATION protein_coding - CCDS28803.1 1 456.0 8.0 3.0 14.0 280.8 1.0 3,-2 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000023961 Enpp4 ENSMUST00000143137 ENSMUSP00000114429 TRANSLATION protein_coding - CCDS28803.1 1 456.0 8.0 3.0 14.0 280.8 1.0 3,-2 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000052525 Spdya ENSMUST00000144142 ENSMUSP00000118994 TRANSLATION protein_coding - CCDS50178.1 1 310.0 0.0 3.25 11.1 199.8 0.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000052525 Spdya ENSMUST00000167641 ENSMUSP00000125912 TRANSLATION protein_coding - CCDS50178.1 5 310.0 0.0 3.25 11.1 199.8 0.0 -4,-7 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000052525 Spdya ENSMUST00000064420 ENSMUSP00000063214 TRANSLATION protein_coding - - 1 309.0 0.0 3.25 8.9 199.8 0.0 -4,-7 0.8084 - 10.346 ALTERNATIVE:1 ENSMUSG00000052525 Spdya ENSMUST00000124001 ENSMUSP00000118426 TRANSLATION protein_coding - CCDS50179.1 1 283.0 0.0 3.25 3.3 199.8 0.0 -4,-7 0.3511 - 8.684 MINOR ENSMUSG00000037098 Rab11fip3 ENSMUST00000122103 ENSMUSP00000113521 TRANSLATION protein_coding - CCDS50041.1 1 1092.0 3.0 1.6 0.0 71.0 0.0 -4,-5 0.5366 8 11.0 ALTERNATIVE:2 ENSMUSG00000037098 Rab11fip3 ENSMUST00000148021 ENSMUSP00000119626 TRANSLATION protein_coding - CCDS50039.1 3 444.0 0.0 1.6 1.0 71.0 0.0 -4,-5 0.3534 7 8.0 MINOR ENSMUSG00000037098 Rab11fip3 ENSMUST00000120691 ENSMUSP00000112875 TRANSLATION protein_coding - CCDS50040.1 1 1047.0 3.0 1.6 0.0 71.0 0.0 -4,-5 1.0 8 11.0 PRINCIPAL:2 ENSMUSG00000037098 Rab11fip3 ENSMUST00000126306 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037098 Rab11fip3 ENSMUST00000144587 - NO_TRANSLATION retained_intron ENSMUSG00000037098 Rab11fip3 ENSMUST00000118828 ENSMUSP00000113048 TRANSLATION protein_coding - CCDS50039.1 1 444.0 0.0 1.6 1.0 71.0 0.0 -4,-5 0.3534 7 8.0 MINOR ENSMUSG00000024193 Phf1 ENSMUST00000237412 ENSMUSP00000158483 TRANSLATION protein_coding - - - 558.0 15.0 9.9 5.2 67.8 0.0 -4,-2 0.8303 9 15.584 ALTERNATIVE:1 ENSMUSG00000024193 Phf1 ENSMUST00000236613 - NO_TRANSLATION retained_intron ENSMUSG00000024193 Phf1 ENSMUST00000073724 ENSMUSP00000073402 TRANSLATION protein_coding - CCDS37518.1 1 559.0 15.0 9.9 6.3 67.8 0.0 -4,-2 1.0 9 16.0 PRINCIPAL:4 ENSMUSG00000024193 Phf1 ENSMUST00000236269 ENSMUSP00000158196 TRANSLATION nonsense_mediated_decay - - - 72.0 0.0 1.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000024193 Phf1 ENSMUST00000237189 ENSMUSP00000157624 TRANSLATION protein_coding - - - 599.0 15.0 9.9 0.0 67.8 0.0 -4,-2 0.0758 10 14.0 MINOR ENSMUSG00000024193 Phf1 ENSMUST00000237750 - NO_TRANSLATION retained_intron ENSMUSG00000024193 Phf1 ENSMUST00000236931 - NO_TRANSLATION retained_intron ENSMUSG00000040966 Slc22a2 ENSMUST00000046959 ENSMUSP00000041186 TRANSLATION protein_coding - CCDS28392.1 1 553.0 0.0 6.765 22.7 121.2 10.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040966 Slc22a2 ENSMUST00000233066 ENSMUSP00000156710 TRANSLATION protein_coding - - - 544.0 0.0 6.665 0.0 121.2 10.0 -4,-7 0.1049 - 11.802 MINOR ENSMUSG00000042203 Tbc1d22b ENSMUST00000234778 ENSMUSP00000157044 TRANSLATION nonsense_mediated_decay - - - 255.0 0.0 1.35 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000042203 Tbc1d22b ENSMUST00000160114 - NO_TRANSLATION retained_intron ENSMUSG00000042203 Tbc1d22b ENSMUST00000048677 ENSMUSP00000046877 TRANSLATION protein_coding - CCDS28597.1 1 505.0 0.0 9.35 19.6 177.0 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000025733 Rhot2 ENSMUST00000177470 - NO_TRANSLATION retained_intron ENSMUSG00000025733 Rhot2 ENSMUST00000176882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025733 Rhot2 ENSMUST00000175790 - NO_TRANSLATION retained_intron ENSMUSG00000025733 Rhot2 ENSMUST00000177347 - NO_TRANSLATION retained_intron ENSMUSG00000025733 Rhot2 ENSMUST00000176604 - NO_TRANSLATION retained_intron ENSMUSG00000025733 Rhot2 ENSMUST00000176857 - NO_TRANSLATION retained_intron ENSMUSG00000025733 Rhot2 ENSMUST00000177315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025733 Rhot2 ENSMUST00000175869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025733 Rhot2 ENSMUST00000177122 - NO_TRANSLATION retained_intron ENSMUSG00000025733 Rhot2 ENSMUST00000176247 - NO_TRANSLATION retained_intron ENSMUSG00000025733 Rhot2 ENSMUST00000176709 ENSMUSP00000135436 TRANSLATION protein_coding stop - 5 121.0 13.0 3.81 0.0 53.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025733 Rhot2 ENSMUST00000176522 - NO_TRANSLATION retained_intron ENSMUSG00000025733 Rhot2 ENSMUST00000177062 - NO_TRANSLATION retained_intron ENSMUSG00000025733 Rhot2 ENSMUST00000043897 ENSMUSP00000044639 TRANSLATION protein_coding - CCDS37505.1 1 620.0 29.0 15.11 30.8 260.2 0.0 -4,-6 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000025733 Rhot2 ENSMUST00000176583 - NO_TRANSLATION retained_intron ENSMUSG00000025733 Rhot2 ENSMUST00000176591 ENSMUSP00000135611 TRANSLATION protein_coding start/stop - 3 172.0 17.0 5.23 0.0 55.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025733 Rhot2 ENSMUST00000176602 - NO_TRANSLATION retained_intron ENSMUSG00000024114 Prss41 ENSMUST00000141788 - NO_TRANSLATION retained_intron ENSMUSG00000024114 Prss41 ENSMUST00000024926 ENSMUSP00000024926 TRANSLATION protein_coding - CCDS28466.1 1 322.0 3.0 2.466 0.4 207.3 0.0 1,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024114 Prss41 ENSMUST00000122936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024114 Prss41 ENSMUST00000151797 ENSMUSP00000122453 TRANSLATION protein_coding - - 1 250.0 2.0 1.366 0.0 101.7 0.0 1,-3 0.0018 - 5.325 MINOR ENSMUSG00000050705 2310061I04Rik ENSMUST00000150056 ENSMUSP00000121142 TRANSLATION protein_coding stop - 3 130.0 0.0 0.6 0.0 63.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000050705 2310061I04Rik ENSMUST00000151274 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050705 2310061I04Rik ENSMUST00000148721 ENSMUSP00000116278 TRANSLATION protein_coding - CCDS50095.1 5 315.0 0.0 0.84 10.3 118.0 0.0 -4,0 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000050705 2310061I04Rik ENSMUST00000156817 ENSMUSP00000114851 TRANSLATION protein_coding stop - 3 63.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000050705 2310061I04Rik ENSMUST00000059740 ENSMUSP00000050693 TRANSLATION protein_coding start - 1 212.0 0.0 0.84 0.0 118.0 0.0 -4,-7 0.0376 5 -2.0 MINOR ENSMUSG00000050705 2310061I04Rik ENSMUST00000154670 ENSMUSP00000123547 TRANSLATION protein_coding start - 3 109.0 0.0 0.24 0.0 74.6 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000050705 2310061I04Rik ENSMUST00000154272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050705 2310061I04Rik ENSMUST00000148482 ENSMUSP00000114151 TRANSLATION protein_coding - - 1 232.0 0.0 0.84 0.0 118.0 0.0 -4,-5 0.0349 5 12.0 MINOR ENSMUSG00000050705 2310061I04Rik ENSMUST00000146451 ENSMUSP00000115771 TRANSLATION protein_coding - - 1 232.0 0.0 0.84 0.0 118.0 0.0 -4,-5 0.0349 5 12.0 MINOR ENSMUSG00000001228 Uhrf1 ENSMUST00000139654 - NO_TRANSLATION retained_intron ENSMUSG00000001228 Uhrf1 ENSMUST00000113035 ENSMUSP00000108658 TRANSLATION protein_coding - CCDS50151.1 1 774.0 12.0 15.0 1.0 483.8 0.0 -4,-6 0.3594 18 13.34 ALTERNATIVE:2 ENSMUSG00000001228 Uhrf1 ENSMUST00000001258 ENSMUSP00000001258 TRANSLATION protein_coding - CCDS28903.1 1 782.0 12.0 15.33 0.4 483.8 0.0 -4,-6 1.0 18 14.0 PRINCIPAL:2 ENSMUSG00000001228 Uhrf1 ENSMUST00000142387 ENSMUSP00000125830 TRANSLATION protein_coding stop - 3 146.0 0.0 2.0 0.0 68.0 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000001228 Uhrf1 ENSMUST00000113039 ENSMUSP00000108662 TRANSLATION protein_coding - CCDS28903.1 1 782.0 12.0 15.33 0.4 483.8 0.0 -4,-6 1.0 18 14.0 PRINCIPAL:2 ENSMUSG00000001228 Uhrf1 ENSMUST00000113038 ENSMUSP00000108661 TRANSLATION protein_coding - CCDS50151.1 1 774.0 12.0 15.0 1.0 483.8 0.0 -4,-6 0.3594 18 13.34 ALTERNATIVE:2 ENSMUSG00000001228 Uhrf1 ENSMUST00000137876 - NO_TRANSLATION retained_intron ENSMUSG00000039512 Bltp3a ENSMUST00000233809 ENSMUSP00000156621 TRANSLATION protein_coding stop - - 177.0 0.0 0.0 0.0 56.5 0.0 -3,-1 0.0257 1 -2.0 MINOR ENSMUSG00000039512 Bltp3a ENSMUST00000130810 ENSMUSP00000156612 TRANSLATION protein_coding stop - 3 123.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039512 Bltp3a ENSMUST00000114849 ENSMUSP00000110499 TRANSLATION protein_coding - CCDS37524.1 1 1429.0 0.0 0.0 0.0 56.8 0.0 -4,-7 1.0 22 6.0 PRINCIPAL:1 ENSMUSG00000039512 Bltp3a ENSMUST00000137825 ENSMUSP00000156562 TRANSLATION nonsense_mediated_decay start - 5 108.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039512 Bltp3a ENSMUST00000233409 ENSMUSP00000156545 TRANSLATION protein_coding start - - 150.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 4 -2.0 MINOR ENSMUSG00000024429 Gnl1 ENSMUST00000087200 ENSMUSP00000084450 TRANSLATION protein_coding - CCDS37606.1 1 607.0 14.0 0.6 10.7 49.2 0.0 -4,-5 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000024429 Gnl1 ENSMUST00000174275 - NO_TRANSLATION retained_intron ENSMUSG00000039153 Runx2 ENSMUST00000113571 ENSMUSP00000109201 TRANSLATION protein_coding - CCDS37624.2 5 528.0 7.0 3.54 1.1 405.0 0.0 -4,-2 1.0 1 15.0 PRINCIPAL:2 ENSMUSG00000039153 Runx2 ENSMUST00000160673 ENSMUSP00000123743 TRANSLATION protein_coding - - 1 596.0 7.0 3.54 0.3 405.0 0.0 -4,-6 0.1251 1 14.0 ALTERNATIVE:2 ENSMUSG00000039153 Runx2 ENSMUST00000160672 ENSMUSP00000125284 TRANSLATION nonsense_mediated_decay start - 1 51.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039153 Runx2 ENSMUST00000160199 ENSMUSP00000125196 TRANSLATION protein_coding start/stop - 3 147.0 7.0 2.5 0.0 181.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039153 Runx2 ENSMUST00000161489 - NO_TRANSLATION retained_intron ENSMUSG00000039153 Runx2 ENSMUST00000162373 ENSMUSP00000124494 TRANSLATION protein_coding - - 5 492.0 7.0 3.54 1.1 405.0 0.0 -4,-2 0.1783 1 15.0 ALTERNATIVE:2 ENSMUSG00000039153 Runx2 ENSMUST00000162629 ENSMUSP00000124374 TRANSLATION protein_coding - - 5 506.0 7.0 3.54 1.0 405.0 0.0 -4,-2 0.1916 1 14.0 ALTERNATIVE:2 ENSMUSG00000039153 Runx2 ENSMUST00000162878 ENSMUSP00000123707 TRANSLATION protein_coding - CCDS70815.1 1 421.0 0.0 2.5 0.0 326.0 0.0 -4,-2 0.0115 1 4.418 MINOR ENSMUSG00000039153 Runx2 ENSMUST00000162130 ENSMUSP00000124199 TRANSLATION protein_coding start/stop - 1 231.0 7.0 3.5 0.0 244.7 0.0 -4,-5 0.034 1 -2.0 MINOR ENSMUSG00000039153 Runx2 ENSMUST00000113568 ENSMUSP00000109198 TRANSLATION nonsense_mediated_decay - - 1 106.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039153 Runx2 ENSMUST00000159943 ENSMUSP00000124918 TRANSLATION protein_coding - CCDS37624.2 1 528.0 7.0 3.54 1.1 405.0 0.0 -4,-2 1.0 1 15.0 PRINCIPAL:2 ENSMUSG00000039153 Runx2 ENSMUST00000113572 ENSMUSP00000109202 TRANSLATION protein_coding - CCDS50116.1 1 514.0 7.0 3.54 1.1 405.0 0.0 -4,-2 0.5207 1 15.0 ALTERNATIVE:2 ENSMUSG00000039153 Runx2 ENSMUST00000162816 ENSMUSP00000125498 TRANSLATION nonsense_mediated_decay - - 1 283.0 7.0 3.5 0.0 276.7 0.0 -4,-2 0.0449 1 -2.0 MINOR ENSMUSG00000039153 Runx2 ENSMUST00000238400 ENSMUSP00000158748 TRANSLATION protein_coding - - - 548.0 7.0 3.54 0.0 276.6 0.0 -4,-2 0.0938 1 13.5 MINOR ENSMUSG00000059714 Flot1 ENSMUST00000172846 ENSMUSP00000134681 TRANSLATION protein_coding stop - 2 192.0 0.0 5.25 0.0 84.9 0.0 -4,-7 0.0012 11 -2.0 MINOR ENSMUSG00000059714 Flot1 ENSMUST00000173273 - NO_TRANSLATION retained_intron ENSMUSG00000059714 Flot1 ENSMUST00000173493 ENSMUSP00000134699 TRANSLATION protein_coding stop - 5 192.0 0.0 5.25 0.0 84.9 0.0 -4,-7 0.0012 11 -2.0 MINOR ENSMUSG00000059714 Flot1 ENSMUST00000173147 ENSMUSP00000133454 TRANSLATION protein_coding stop - 5 196.0 0.0 5.25 0.0 84.9 0.0 -4,-7 0.0012 11 -2.0 MINOR ENSMUSG00000059714 Flot1 ENSMUST00000173337 - NO_TRANSLATION retained_intron ENSMUSG00000059714 Flot1 ENSMUST00000173381 - NO_TRANSLATION retained_intron ENSMUSG00000059714 Flot1 ENSMUST00000174080 ENSMUSP00000134227 TRANSLATION protein_coding - - 5 380.0 0.0 7.75 1.9 62.5 0.0 -4,-7 0.0443 21 6.788 MINOR ENSMUSG00000059714 Flot1 ENSMUST00000001569 ENSMUSP00000001569 TRANSLATION protein_coding - CCDS28705.1 1 428.0 0.0 8.75 15.6 120.2 0.0 -4,-7 1.0 25 16.0 PRINCIPAL:1 ENSMUSG00000059714 Flot1 ENSMUST00000174297 - NO_TRANSLATION retained_intron ENSMUSG00000059714 Flot1 ENSMUST00000174227 - NO_TRANSLATION retained_intron ENSMUSG00000059714 Flot1 ENSMUST00000173628 ENSMUSP00000133289 TRANSLATION nonsense_mediated_decay - - 5 40.0 0.0 1.25 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000056515 Rab31 ENSMUST00000233258 ENSMUSP00000156917 TRANSLATION protein_coding - - - 44.0 13.0 1.25 0.0 38.5 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000056515 Rab31 ENSMUST00000070673 ENSMUSP00000068195 TRANSLATION protein_coding - CCDS50166.1 1 195.0 24.0 5.35 34.2 187.3 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000035842 Ddx11 ENSMUST00000225687 - NO_TRANSLATION retained_intron ENSMUSG00000035842 Ddx11 ENSMUST00000223805 - NO_TRANSLATION retained_intron ENSMUSG00000035842 Ddx11 ENSMUST00000163605 ENSMUSP00000130440 TRANSLATION protein_coding - CCDS28945.1 5 880.0 8.0 5.21125 0.0 360.2 0.0 -4,-5 0.5023 9 14.0 ALTERNATIVE:2 ENSMUSG00000035842 Ddx11 ENSMUST00000223801 - NO_TRANSLATION retained_intron ENSMUSG00000035842 Ddx11 ENSMUST00000225956 ENSMUSP00000152906 TRANSLATION protein_coding stop - - 168.0 8.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000035842 Ddx11 ENSMUST00000224903 ENSMUSP00000153635 TRANSLATION nonsense_mediated_decay - - - 393.0 8.0 1.0 0.0 107.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000035842 Ddx11 ENSMUST00000224497 ENSMUSP00000153436 TRANSLATION protein_coding - - - 906.0 8.0 5.21125 0.4 360.2 0.0 -4,-5 0.8228 9 14.0 PRINCIPAL:2 ENSMUSG00000035842 Ddx11 ENSMUST00000226095 - NO_TRANSLATION retained_intron ENSMUSG00000035842 Ddx11 ENSMUST00000223600 - NO_TRANSLATION retained_intron ENSMUSG00000014426 Map3k4 ENSMUST00000233002 ENSMUSP00000156645 TRANSLATION protein_coding stop - - 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000014426 Map3k4 ENSMUST00000232689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014426 Map3k4 ENSMUST00000233252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014426 Map3k4 ENSMUST00000089058 ENSMUSP00000086459 TRANSLATION protein_coding - CCDS37435.1 1 1597.0 20.0 4.216 0.8 230.9 0.0 -4,-5 0.7301 27 14.0 ALTERNATIVE:2 ENSMUSG00000014426 Map3k4 ENSMUST00000233755 ENSMUSP00000156730 TRANSLATION protein_coding - - - 1545.0 20.0 4.216 0.1 230.9 0.0 -4,-5 0.9194 27 14.0 PRINCIPAL:4 ENSMUSG00000014426 Map3k4 ENSMUST00000233683 - NO_TRANSLATION retained_intron ENSMUSG00000014426 Map3k4 ENSMUST00000232931 - NO_TRANSLATION retained_intron ENSMUSG00000014426 Map3k4 ENSMUST00000233716 - NO_TRANSLATION retained_intron ENSMUSG00000014426 Map3k4 ENSMUST00000233012 ENSMUSP00000156490 TRANSLATION protein_coding stop - - 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000116564 Riok2 ENSMUST00000024620 ENSMUSP00000024620 TRANSLATION protein_coding - CCDS28417.1 1 547.0 19.0 6.63 8.1 297.2 0.0 -4,-7 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000116564 Riok2 ENSMUST00000232199 ENSMUSP00000155859 TRANSLATION protein_coding stop - - 129.0 11.0 3.08 0.0 141.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000116564 Riok2 ENSMUST00000232396 ENSMUSP00000156350 TRANSLATION protein_coding - - - 477.0 19.0 6.63 0.0 297.2 0.0 -4,-7 0.0503 4 18.0 MINOR ENSMUSG00000049561 Or10c1 ENSMUST00000060728 ENSMUSP00000058929 TRANSLATION protein_coding - CCDS28739.1 - 312.0 0.0 1.0 9.2 193.3 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049561 Or10c1 ENSMUST00000216318 ENSMUSP00000150480 TRANSLATION protein_coding - CCDS28739.1 5 312.0 0.0 1.0 9.2 193.3 5.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024365 Cyp21a1 ENSMUST00000173394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024365 Cyp21a1 ENSMUST00000173970 - NO_TRANSLATION retained_intron ENSMUSG00000024365 Cyp21a1 ENSMUST00000025223 ENSMUSP00000025223 TRANSLATION protein_coding - CCDS28658.1 1 487.0 32.0 8.85 0.0 321.2 0.0 3,-1 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000024219 Anks1 ENSMUST00000114842 ENSMUSP00000110491 TRANSLATION protein_coding - CCDS37525.1 1 1150.0 0.0 13.0 1.4 325.6 0.0 -4,-5 1.0 18 8.0 PRINCIPAL:2 ENSMUSG00000024219 Anks1 ENSMUST00000088027 ENSMUSP00000085344 TRANSLATION protein_coding - CCDS70778.1 1 1168.0 0.0 12.55 0.1 318.5 0.0 -4,-5 0.447 17 7.1 MINOR ENSMUSG00000024219 Anks1 ENSMUST00000233309 ENSMUSP00000156473 TRANSLATION protein_coding start - - 209.0 0.0 2.68 0.0 67.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024219 Anks1 ENSMUST00000233298 ENSMUSP00000156742 TRANSLATION protein_coding stop - - 82.0 0.0 2.08 0.0 62.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024219 Anks1 ENSMUST00000233058 ENSMUSP00000156525 TRANSLATION protein_coding stop - - 110.0 0.0 2.0 0.0 57.6 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000024219 Anks1 ENSMUST00000233869 ENSMUSP00000156843 TRANSLATION protein_coding stop - - 142.0 0.0 2.68 0.0 83.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024219 Anks1 ENSMUST00000233525 ENSMUSP00000156466 TRANSLATION protein_coding - - - 1129.0 0.0 12.55 1.1 318.5 0.0 -4,-5 0.186 17 7.35 MINOR ENSMUSG00000024219 Anks1 ENSMUST00000233866 ENSMUSP00000156529 TRANSLATION protein_coding start - - 44.0 0.0 0.4 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024219 Anks1 ENSMUST00000232872 ENSMUSP00000156946 TRANSLATION protein_coding start - - 433.0 0.0 7.11 0.0 159.6 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000024219 Anks1 ENSMUST00000139173 ENSMUSP00000156518 TRANSLATION protein_coding - - 1 593.0 0.0 7.61 1.0 183.6 0.0 -4,-5 0.0025 11 1.0 MINOR ENSMUSG00000024219 Anks1 ENSMUST00000232769 - NO_TRANSLATION retained_intron ENSMUSG00000024219 Anks1 ENSMUST00000025058 ENSMUSP00000025058 TRANSLATION protein_coding - CCDS70777.1 1 1189.0 0.0 13.0 1.2 325.6 0.0 -4,-5 0.5534 18 7.5 ALTERNATIVE:2 ENSMUSG00000024219 Anks1 ENSMUST00000232742 - NO_TRANSLATION retained_intron ENSMUSG00000024006 Stk38 ENSMUST00000141431 ENSMUSP00000156592 TRANSLATION protein_coding start - 3 261.0 5.0 5.402 0.0 146.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024006 Stk38 ENSMUST00000126893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024006 Stk38 ENSMUST00000144299 - NO_TRANSLATION retained_intron ENSMUSG00000024006 Stk38 ENSMUST00000156732 ENSMUSP00000156467 TRANSLATION protein_coding start - 3 14.0 0.0 0.165 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024006 Stk38 ENSMUST00000125070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024006 Stk38 ENSMUST00000142923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024006 Stk38 ENSMUST00000126619 - NO_TRANSLATION retained_intron ENSMUSG00000024006 Stk38 ENSMUST00000126671 - NO_TRANSLATION retained_intron ENSMUSG00000024006 Stk38 ENSMUST00000144516 - NO_TRANSLATION retained_intron ENSMUSG00000024006 Stk38 ENSMUST00000233606 ENSMUSP00000156699 TRANSLATION nonsense_mediated_decay - - - 132.0 9.0 2.4 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000024006 Stk38 ENSMUST00000232723 ENSMUSP00000156597 TRANSLATION protein_coding - - - 117.0 5.0 1.56 0.0 0.0 0.0 -4,-7 0.0 2 0.0 MINOR ENSMUSG00000024006 Stk38 ENSMUST00000233093 - NO_TRANSLATION retained_intron ENSMUSG00000024006 Stk38 ENSMUST00000232724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024006 Stk38 ENSMUST00000129094 - NO_TRANSLATION retained_intron ENSMUSG00000024006 Stk38 ENSMUST00000142366 ENSMUSP00000156577 TRANSLATION nonsense_mediated_decay - - 1 61.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024006 Stk38 ENSMUST00000233723 - NO_TRANSLATION retained_intron ENSMUSG00000024006 Stk38 ENSMUST00000233864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024006 Stk38 ENSMUST00000009138 ENSMUSP00000009138 TRANSLATION protein_coding - CCDS28589.1 1 465.0 20.0 8.87 36.9 226.0 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000024006 Stk38 ENSMUST00000233441 ENSMUSP00000156829 TRANSLATION protein_coding stop - - 307.0 20.0 5.525 0.0 158.8 0.0 -4,-6 0.0009 5 -2.0 MINOR ENSMUSG00000024006 Stk38 ENSMUST00000233329 ENSMUSP00000156610 TRANSLATION nonsense_mediated_decay - - - 61.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024006 Stk38 ENSMUST00000119274 ENSMUSP00000113657 TRANSLATION protein_coding - CCDS28589.1 1 465.0 20.0 8.87 36.9 226.0 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000024006 Stk38 ENSMUST00000140355 - NO_TRANSLATION retained_intron ENSMUSG00000024006 Stk38 ENSMUST00000232836 ENSMUSP00000156711 TRANSLATION protein_coding - CCDS28589.1 - 465.0 20.0 8.87 36.9 226.0 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000024006 Stk38 ENSMUST00000233510 ENSMUSP00000156784 TRANSLATION nonsense_mediated_decay - - - 58.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024006 Stk38 ENSMUST00000145298 - NO_TRANSLATION retained_intron ENSMUSG00000024121 Atp6v0c ENSMUST00000150647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024121 Atp6v0c ENSMUST00000098862 ENSMUSP00000111059 TRANSLATION protein_coding - CCDS28476.1 2 155.0 0.0 2.75 18.2 131.9 5.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000024121 Atp6v0c ENSMUST00000148541 ENSMUSP00000121464 TRANSLATION protein_coding stop - 3 150.0 0.0 2.75 0.0 129.3 4.0 -4,-7 0.0615 1 -2.0 MINOR ENSMUSG00000024121 Atp6v0c ENSMUST00000151061 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024121 Atp6v0c ENSMUST00000156061 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024121 Atp6v0c ENSMUST00000024932 ENSMUSP00000024932 TRANSLATION protein_coding - CCDS28476.1 1 155.0 0.0 2.75 18.2 131.9 5.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000056121 Fez2 ENSMUST00000234067 - NO_TRANSLATION retained_intron ENSMUSG00000056121 Fez2 ENSMUST00000234029 ENSMUSP00000157359 TRANSLATION protein_coding - - - 331.0 0.0 0.0 0.0 309.8 0.0 -4,-5 0.05 6 2.0 MINOR ENSMUSG00000056121 Fez2 ENSMUST00000234601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056121 Fez2 ENSMUST00000112487 ENSMUSP00000108106 TRANSLATION protein_coding - CCDS70844.1 1 375.0 0.0 0.0 9.7 309.3 0.0 -4,-5 1.0 8 5.0 PRINCIPAL:4 ENSMUSG00000056121 Fez2 ENSMUST00000234530 ENSMUSP00000157338 TRANSLATION protein_coding - - - 373.0 0.0 0.0 9.7 309.3 0.0 -4,-5 0.8243 8 5.0 ALTERNATIVE:1 ENSMUSG00000056121 Fez2 ENSMUST00000234900 - NO_TRANSLATION retained_intron ENSMUSG00000056121 Fez2 ENSMUST00000234052 ENSMUSP00000157187 TRANSLATION protein_coding - - - 345.0 0.0 0.0 0.0 309.8 0.0 -4,-5 0.0507 7 2.0 MINOR ENSMUSG00000056121 Fez2 ENSMUST00000070039 ENSMUSP00000068987 TRANSLATION protein_coding - CCDS28977.1 1 348.0 0.0 0.0 9.6 309.8 0.0 -4,-5 0.9799 7 4.967 ALTERNATIVE:1 ENSMUSG00000023912 Slc25a27 ENSMUST00000233442 ENSMUSP00000156649 TRANSLATION protein_coding - - - 81.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000023912 Slc25a27 ENSMUST00000024705 ENSMUSP00000024705 TRANSLATION protein_coding - CCDS28798.1 1 322.0 8.0 5.375 12.2 213.4 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000015605 Srf ENSMUST00000233797 - NO_TRANSLATION retained_intron ENSMUSG00000015605 Srf ENSMUST00000233767 - NO_TRANSLATION retained_intron ENSMUSG00000015605 Srf ENSMUST00000233104 ENSMUSP00000156719 TRANSLATION protein_coding start - - 97.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0157 - -2.0 MINOR ENSMUSG00000015605 Srf ENSMUST00000015749 ENSMUSP00000015749 TRANSLATION protein_coding - CCDS28831.1 1 504.0 0.0 1.4 6.2 0.0 0.0 -4,-7 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000061232 H2-K1 ENSMUST00000238098 ENSMUSP00000157920 TRANSLATION protein_coding start/stop - - 355.0 4.0 6.766 0.0 339.2 2.0 3,-2 0.0561 9 -2.0 MINOR ENSMUSG00000061232 H2-K1 ENSMUST00000236757 - NO_TRANSLATION retained_intron ENSMUSG00000061232 H2-K1 ENSMUST00000235463 ENSMUSP00000157649 TRANSLATION protein_coding start - - 190.0 3.0 4.316 0.0 79.2 2.0 -4,-1 0.0016 4 -2.0 MINOR ENSMUSG00000061232 H2-K1 ENSMUST00000173543 - NO_TRANSLATION retained_intron ENSMUSG00000061232 H2-K1 ENSMUST00000025181 ENSMUSP00000025181 TRANSLATION protein_coding - CCDS50069.1 1 369.0 4.0 7.266 0.0 390.1 2.0 3,-1 0.3846 10 12.0 ALTERNATIVE:2 ENSMUSG00000061232 H2-K1 ENSMUST00000173317 - NO_TRANSLATION retained_intron ENSMUSG00000061232 H2-K1 ENSMUST00000173075 ENSMUSP00000133847 TRANSLATION protein_coding stop - 3 289.0 4.0 5.45 0.0 349.7 0.0 3,-3 0.0073 7 -2.0 MINOR ENSMUSG00000061232 H2-K1 ENSMUST00000236877 - NO_TRANSLATION retained_intron ENSMUSG00000061232 H2-K1 ENSMUST00000114311 - NO_TRANSLATION retained_intron ENSMUSG00000061232 H2-K1 ENSMUST00000172782 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061232 H2-K1 ENSMUST00000173602 - NO_TRANSLATION retained_intron ENSMUSG00000061232 H2-K1 ENSMUST00000236469 ENSMUSP00000157631 TRANSLATION protein_coding start - - 130.0 0.0 2.75 0.0 38.6 2.0 -4,-5 0.0024 2 -2.0 MINOR ENSMUSG00000061232 H2-K1 ENSMUST00000236740 ENSMUSP00000158220 TRANSLATION protein_coding - - - 356.0 4.0 7.266 0.0 368.3 2.0 3,-1 0.1067 9 11.142 MINOR ENSMUSG00000061232 H2-K1 ENSMUST00000172912 ENSMUSP00000134004 TRANSLATION protein_coding - CCDS84295.1 1 360.0 4.0 7.266 3.6 390.1 2.0 3,-1 1.0 10 13.0 PRINCIPAL:2 ENSMUSG00000061232 H2-K1 ENSMUST00000238021 - NO_TRANSLATION retained_intron ENSMUSG00000061232 H2-K1 ENSMUST00000087189 ENSMUSP00000084436 TRANSLATION protein_coding - - 1 187.0 0.0 4.016 0.0 79.2 2.0 4,-1 0.0035 4 1.142 MINOR ENSMUSG00000067941 Gm7168 ENSMUST00000088809 ENSMUSP00000094997 TRANSLATION protein_coding - CCDS49956.1 1 508.0 18.0 0.5 0.1 231.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000092043 Esp6 ENSMUST00000232937 ENSMUSP00000156808 TRANSLATION protein_coding - - - 156.0 0.0 0.0 0.0 135.4 0.0 -4,-7 0.0552 2 2.0 ALTERNATIVE:2 ENSMUSG00000092043 Esp6 ENSMUST00000097324 ENSMUSP00000094930 TRANSLATION protein_coding - CCDS50109.1 1 136.0 0.0 0.0 0.0 135.4 0.0 3,-2 1.0 2 2.0 PRINCIPAL:2 ENSMUSG00000023952 Gtpbp2 ENSMUST00000167681 - NO_TRANSLATION retained_intron ENSMUSG00000023952 Gtpbp2 ENSMUST00000165686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023952 Gtpbp2 ENSMUST00000166563 ENSMUSP00000127896 TRANSLATION protein_coding stop - 3 100.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023952 Gtpbp2 ENSMUST00000164338 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023952 Gtpbp2 ENSMUST00000163941 - NO_TRANSLATION retained_intron ENSMUSG00000023952 Gtpbp2 ENSMUST00000169918 - NO_TRANSLATION retained_intron ENSMUSG00000023952 Gtpbp2 ENSMUST00000024748 ENSMUSP00000024748 TRANSLATION protein_coding - CCDS50122.1 1 602.0 16.0 9.474 8.9 87.7 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000023952 Gtpbp2 ENSMUST00000169778 - NO_TRANSLATION retained_intron ENSMUSG00000023952 Gtpbp2 ENSMUST00000166701 ENSMUSP00000131772 TRANSLATION protein_coding start - 2 253.0 0.0 3.724 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023952 Gtpbp2 ENSMUST00000172170 ENSMUSP00000128517 TRANSLATION protein_coding - - 5 604.0 16.0 8.474 0.0 87.7 0.0 -4,-5 0.1345 8 16.002 MINOR ENSMUSG00000023952 Gtpbp2 ENSMUST00000169383 ENSMUSP00000133050 TRANSLATION nonsense_mediated_decay - - 1 51.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023952 Gtpbp2 ENSMUST00000169955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023952 Gtpbp2 ENSMUST00000166663 - NO_TRANSLATION retained_intron ENSMUSG00000023952 Gtpbp2 ENSMUST00000166252 ENSMUSP00000128049 TRANSLATION nonsense_mediated_decay start - 3 36.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023952 Gtpbp2 ENSMUST00000171901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023952 Gtpbp2 ENSMUST00000169798 - NO_TRANSLATION retained_intron ENSMUSG00000023952 Gtpbp2 ENSMUST00000167404 - NO_TRANSLATION retained_intron ENSMUSG00000000708 Kat2b ENSMUST00000163648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000708 Kat2b ENSMUST00000171072 ENSMUSP00000127807 TRANSLATION nonsense_mediated_decay start - 5 118.0 8.0 1.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000708 Kat2b ENSMUST00000166525 ENSMUSP00000126232 TRANSLATION protein_coding start - 3 66.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000000708 Kat2b ENSMUST00000000724 ENSMUSP00000000724 TRANSLATION protein_coding - CCDS28880.1 1 813.0 26.0 13.05 0.1 490.8 0.0 -3,-6 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000000708 Kat2b ENSMUST00000172160 - NO_TRANSLATION retained_intron ENSMUSG00000000708 Kat2b ENSMUST00000167092 - NO_TRANSLATION retained_intron ENSMUSG00000000708 Kat2b ENSMUST00000164390 ENSMUSP00000127659 TRANSLATION protein_coding stop - 5 211.0 0.0 3.55 0.0 296.7 0.0 -4,-5 0.0013 3 -2.0 MINOR ENSMUSG00000024074 Crim1 ENSMUST00000234546 ENSMUSP00000157312 TRANSLATION protein_coding start/stop - - 244.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024074 Crim1 ENSMUST00000234964 ENSMUSP00000156992 TRANSLATION protein_coding start/stop - - 211.0 0.0 1.41 0.0 33.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024074 Crim1 ENSMUST00000234059 ENSMUSP00000157204 TRANSLATION nonsense_mediated_decay start - - 103.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024074 Crim1 ENSMUST00000234700 ENSMUSP00000157299 TRANSLATION protein_coding start - - 812.0 0.0 1.298 0.0 260.8 1.0 -4,-5 0.0089 11 -2.0 MINOR ENSMUSG00000024074 Crim1 ENSMUST00000112498 ENSMUSP00000108117 TRANSLATION protein_coding - CCDS28976.1 1 1037.0 0.0 2.4205 9.5 355.0 1.0 3,-1 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000024074 Crim1 ENSMUST00000234439 ENSMUSP00000157111 TRANSLATION protein_coding start/stop - - 183.0 0.0 0.2 0.0 38.3 1.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002661 Alkbh7 ENSMUST00000149632 - NO_TRANSLATION retained_intron ENSMUSG00000002661 Alkbh7 ENSMUST00000074141 ENSMUSP00000073775 TRANSLATION protein_coding - CCDS57105.1 1 163.0 8.0 3.0 0.1 0.0 0.0 0,3 0.1071 4 6.0 MINOR ENSMUSG00000002661 Alkbh7 ENSMUST00000002737 ENSMUSP00000002737 TRANSLATION protein_coding - CCDS28921.1 1 221.0 14.0 4.0 8.2 0.0 0.0 0,3 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000024436 Mrps18b ENSMUST00000113782 ENSMUSP00000109412 TRANSLATION protein_coding - CCDS84307.1 1 162.0 0.0 3.58 0.0 52.4 0.0 -2,-7 0.0261 1 6.57 MINOR ENSMUSG00000024436 Mrps18b ENSMUST00000174349 ENSMUSP00000134264 TRANSLATION protein_coding start - 3 111.0 2.0 2.482 0.0 0.0 0.0 -4,-7 0.0005 2 -2.0 MINOR ENSMUSG00000024436 Mrps18b ENSMUST00000172642 ENSMUSP00000134183 TRANSLATION protein_coding start - 5 106.0 2.0 2.482 0.0 0.0 0.0 -4,-7 0.0005 2 -2.0 MINOR ENSMUSG00000024436 Mrps18b ENSMUST00000173737 - NO_TRANSLATION retained_intron ENSMUSG00000024436 Mrps18b ENSMUST00000173792 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024436 Mrps18b ENSMUST00000174807 ENSMUSP00000133584 TRANSLATION protein_coding start - 3 188.0 2.0 4.232 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000024436 Mrps18b ENSMUST00000025305 ENSMUSP00000025305 TRANSLATION protein_coding - CCDS28712.1 1 254.0 2.0 5.93 5.8 59.7 0.0 -3,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000024436 Mrps18b ENSMUST00000174574 - NO_TRANSLATION retained_intron ENSMUSG00000073411 H2-D1 ENSMUST00000172785 ENSMUSP00000134570 TRANSLATION protein_coding - CCDS57074.1 1 362.0 4.0 4.0 3.6 383.8 2.0 4,-2 1.0 8 13.0 PRINCIPAL:2 ENSMUSG00000073411 H2-D1 ENSMUST00000174325 - NO_TRANSLATION retained_intron ENSMUSG00000073411 H2-D1 ENSMUST00000172503 ENSMUSP00000134582 TRANSLATION protein_coding - - 3 380.0 4.0 4.0 0.0 383.8 2.0 4,-2 0.1504 9 12.0 ALTERNATIVE:2 ENSMUSG00000069729 Arid1b ENSMUST00000156775 - NO_TRANSLATION retained_intron ENSMUSG00000069729 Arid1b ENSMUST00000146703 - NO_TRANSLATION retained_intron ENSMUSG00000069729 Arid1b ENSMUST00000092723 ENSMUSP00000090398 TRANSLATION protein_coding - - 5 2243.0 0.0 2.4 0.0 444.3 0.0 -2,1 0.5748 31 8.0 ALTERNATIVE:2 ENSMUSG00000069729 Arid1b ENSMUST00000115797 ENSMUSP00000111463 TRANSLATION protein_coding - CCDS49929.1 5 2244.0 0.0 2.4 0.0 444.3 0.0 -4,-6 0.9096 31 8.0 ALTERNATIVE:2 ENSMUSG00000069729 Arid1b ENSMUST00000115799 ENSMUSP00000111465 TRANSLATION protein_coding - - 5 1762.0 0.0 2.4 0.0 444.3 0.0 -4,-6 0.4283 27 8.0 ALTERNATIVE:2 ENSMUSG00000069729 Arid1b ENSMUST00000124362 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069729 Arid1b ENSMUST00000232180 ENSMUSP00000156119 TRANSLATION protein_coding - - - 2296.0 0.0 2.4 0.0 444.3 0.0 -2,1 1.0 31 8.0 PRINCIPAL:4 ENSMUSG00000116672 Gm49630 ENSMUST00000231397 ENSMUSP00000155918 TRANSLATION protein_coding,RT start - - 164.0 0.0 0.85 0.0 0.0 0.0 -4,-5 0.6808 - -2.0 PRINCIPAL:1 ENSMUSG00000059964 Or10al3 ENSMUST00000080483 ENSMUSP00000092919 TRANSLATION protein_coding - CCDS28761.1 1 321.0 0.0 1.0 6.1 198.3 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000059964 Or10al3 ENSMUST00000213732 ENSMUSP00000150099 TRANSLATION protein_coding - CCDS28761.1 5 321.0 0.0 1.0 6.1 198.3 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000040327 Cul9 ENSMUST00000182451 - NO_TRANSLATION retained_intron ENSMUSG00000040327 Cul9 ENSMUST00000182485 ENSMUSP00000138418 TRANSLATION protein_coding - CCDS37636.2 5 2530.0 16.0 5.573 0.0 317.5 0.0 -4,-2 0.9591 33 14.0 ALTERNATIVE:2 ENSMUSG00000040327 Cul9 ENSMUST00000182315 - NO_TRANSLATION retained_intron ENSMUSG00000040327 Cul9 ENSMUST00000183163 - NO_TRANSLATION retained_intron ENSMUSG00000040327 Cul9 ENSMUST00000183078 - NO_TRANSLATION retained_intron ENSMUSG00000040327 Cul9 ENSMUST00000183312 - NO_TRANSLATION retained_intron ENSMUSG00000040327 Cul9 ENSMUST00000183016 - NO_TRANSLATION retained_intron ENSMUSG00000040327 Cul9 ENSMUST00000182530 - NO_TRANSLATION retained_intron ENSMUSG00000040327 Cul9 ENSMUST00000066026 ENSMUSP00000067736 TRANSLATION protein_coding - - 5 2520.0 16.0 5.573 0.0 317.5 0.0 -4,-2 1.0 33 14.0 PRINCIPAL:4 ENSMUSG00000040327 Cul9 ENSMUST00000182668 - NO_TRANSLATION retained_intron ENSMUSG00000040327 Cul9 ENSMUST00000182799 - NO_TRANSLATION retained_intron ENSMUSG00000024339 Tap2 ENSMUST00000025197 ENSMUSP00000025197 TRANSLATION protein_coding - CCDS28644.1 1 702.0 12.0 10.6 4.8 312.7 3.0 4,-1 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000024339 Tap2 ENSMUST00000138491 ENSMUSP00000118916 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -1,-5 0.0 - -2.0 MINOR ENSMUSG00000024339 Tap2 ENSMUST00000145528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024339 Tap2 ENSMUST00000127543 - NO_TRANSLATION retained_intron ENSMUSG00000024339 Tap2 ENSMUST00000131105 ENSMUSP00000118700 TRANSLATION protein_coding stop - 5 91.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000067951 Vmn1r227 ENSMUST00000232943 ENSMUSP00000156554 TRANSLATION protein_coding - - - 311.0 0.0 0.0 0.0 85.5 6.0 -1,-5 0.7413 - 6.0 PRINCIPAL:1 ENSMUSG00000067951 Vmn1r227 ENSMUST00000179914 ENSMUSP00000156485 TRANSLATION protein_coding - - - 311.0 0.0 0.0 0.0 85.5 6.0 -1,-5 0.7413 - 6.0 PRINCIPAL:1 ENSMUSG00000067951 Vmn1r227 ENSMUST00000232844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067951 Vmn1r227 ENSMUST00000233597 ENSMUSP00000156626 TRANSLATION protein_coding - - - 311.0 0.0 0.0 0.0 85.5 6.0 -1,-5 0.7413 - 6.0 PRINCIPAL:1 ENSMUSG00000067951 Vmn1r227 ENSMUST00000088829 - NO_TRANSLATION retained_intron ENSMUSG00000023984 Gm20517 ENSMUST00000146105 - NO_TRANSLATION retained_intron ENSMUSG00000023984 Gm20517 ENSMUST00000130830 - NO_TRANSLATION retained_intron ENSMUSG00000023984 Gm20517 ENSMUST00000132397 ENSMUSP00000117658 TRANSLATION nonsense_mediated_decay,RT - - 1 152.0 0.0 2.0 0.0 127.3 0.0 -4,-5 0.746 - -2.0 PRINCIPAL:1 ENSMUSG00000034923 Ly6g6f ENSMUST00000038507 ENSMUSP00000046380 TRANSLATION protein_coding - CCDS50083.1 1 300.0 0.0 0.1 3.9 34.9 0.0 2,-2 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000050747 Trim15 ENSMUST00000173639 ENSMUSP00000133638 TRANSLATION nonsense_mediated_decay start - 5 136.0 0.0 2.0 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000050747 Trim15 ENSMUST00000174195 ENSMUSP00000133953 TRANSLATION protein_coding - CCDS57079.1 1 292.0 16.0 4.26 0.4 57.1 0.0 -4,0 0.5284 2 14.0 ALTERNATIVE:2 ENSMUSG00000050747 Trim15 ENSMUST00000025329 ENSMUSP00000025329 TRANSLATION protein_coding - CCDS50102.1 1 290.0 16.0 4.26 0.4 57.1 0.0 -4,0 1.0 2 14.0 PRINCIPAL:2 ENSMUSG00000094892 Vmn2r101 ENSMUST00000232916 - NO_TRANSLATION retained_intron ENSMUSG00000094892 Vmn2r101 ENSMUST00000171914 ENSMUSP00000131583 TRANSLATION protein_coding - CCDS49978.1 5 857.0 4.0 2.36 0.1 377.7 0.0 0,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000046329 Slc25a23 ENSMUST00000040280 ENSMUSP00000040198 TRANSLATION protein_coding - CCDS28923.1 1 467.0 44.0 8.244 4.4 301.6 0.0 -4,-6 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000046329 Slc25a23 ENSMUST00000165187 - NO_TRANSLATION retained_intron ENSMUSG00000046329 Slc25a23 ENSMUST00000170015 ENSMUSP00000132169 TRANSLATION protein_coding start/stop - 5 266.0 25.0 4.694 0.0 199.2 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000046329 Slc25a23 ENSMUST00000171528 ENSMUSP00000128348 TRANSLATION protein_coding start - 3 176.0 17.0 2.73 0.0 110.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000046329 Slc25a23 ENSMUST00000171128 ENSMUSP00000129354 TRANSLATION nonsense_mediated_decay start - 3 47.0 5.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000046329 Slc25a23 ENSMUST00000163442 ENSMUSP00000132962 TRANSLATION protein_coding start - 3 179.0 11.0 1.4 0.0 70.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000078546 Zfp995 ENSMUST00000185948 - NO_TRANSLATION retained_intron ENSMUSG00000078546 Zfp995 ENSMUST00000186313 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078546 Zfp995 ENSMUST00000190066 ENSMUSP00000139581 TRANSLATION protein_coding - CCDS57051.1 2 437.0 36.0 1.2 0.0 262.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078546 Zfp995 ENSMUST00000106026 ENSMUSP00000101647 TRANSLATION protein_coding - CCDS57051.1 1 437.0 36.0 1.2 0.0 262.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000078546 Zfp995 ENSMUST00000189719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000117406 Ntn3 ENSMUST00000234909 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000117406 Ntn3 ENSMUST00000234451 - NO_TRANSLATION retained_intron ENSMUSG00000117406 Ntn3 ENSMUST00000234420 ENSMUSP00000157203 TRANSLATION nonsense_mediated_decay - - - 269.0 0.0 0.4 0.0 103.6 0.0 3,-2 0.0004 1 -2.0 MINOR ENSMUSG00000117406 Ntn3 ENSMUST00000024931 ENSMUSP00000024931 TRANSLATION protein_coding - CCDS28478.1 1 580.0 0.0 3.73 6.5 321.3 0.0 3,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000044279 Crb3 ENSMUST00000097299 ENSMUSP00000094902 TRANSLATION protein_coding - CCDS28924.1 1 113.0 0.0 2.25 0.1 0.0 2.0 0,-3 1.0 2 6.0 PRINCIPAL:2 ENSMUSG00000044279 Crb3 ENSMUST00000163763 ENSMUSP00000132502 TRANSLATION protein_coding - CCDS28924.1 2 113.0 0.0 2.25 0.1 0.0 2.0 0,-3 1.0 2 6.0 PRINCIPAL:2 ENSMUSG00000044279 Crb3 ENSMUST00000163628 ENSMUSP00000126402 TRANSLATION protein_coding stop - 2 62.0 3.0 0.0 0.0 0.0 0.0 1,-2 0.097 - -2.0 MINOR ENSMUSG00000044279 Crb3 ENSMUST00000169543 ENSMUSP00000125760 TRANSLATION protein_coding - CCDS84327.1 2 117.0 0.0 1.875 1.1 0.0 2.0 0,-3 0.2672 1 5.998 ALTERNATIVE:2 ENSMUSG00000044279 Crb3 ENSMUST00000071826 ENSMUSP00000071729 TRANSLATION protein_coding - CCDS28924.1 3 113.0 0.0 2.25 0.1 0.0 2.0 0,-3 1.0 2 6.0 PRINCIPAL:2 ENSMUSG00000091350 Vmn2r92 ENSMUST00000240717 ENSMUSP00000159510 TRANSLATION protein_coding - - - 859.0 5.0 2.16 0.1 393.4 6.0 1,-3 0.7844 - 13.0 ALTERNATIVE:2 ENSMUSG00000091350 Vmn2r92 ENSMUST00000169686 ENSMUSP00000128685 TRANSLATION protein_coding - CCDS49970.1 5 860.0 5.0 2.16 0.1 392.8 6.0 1,-3 1.0 - 13.0 PRINCIPAL:4 ENSMUSG00000024145 Pigf ENSMUST00000024957 ENSMUSP00000024957 TRANSLATION protein_coding - CCDS29011.1 1 219.0 0.0 5.0 24.9 159.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036858 Ptcra ENSMUST00000041012 ENSMUSP00000035683 TRANSLATION protein_coding - CCDS28840.1 1 206.0 0.0 1.0 0.4 224.9 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042256 Ptchd4 ENSMUST00000232968 ENSMUSP00000156770 TRANSLATION protein_coding - - - 904.0 0.0 0.92 11.6 331.4 9.0 -4,0 0.9483 2 9.0 ALTERNATIVE:1 ENSMUSG00000042256 Ptchd4 ENSMUST00000233746 - NO_TRANSLATION retained_intron ENSMUSG00000042256 Ptchd4 ENSMUST00000048691 ENSMUSP00000047640 TRANSLATION protein_coding - CCDS50112.1 5 901.0 0.0 0.92 8.6 331.4 9.0 -3,0 1.0 2 8.151 PRINCIPAL:4 ENSMUSG00000051977 Prdm9 ENSMUST00000132675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051977 Prdm9 ENSMUST00000167994 ENSMUSP00000131871 TRANSLATION protein_coding - - 1 843.0 52.0 4.25 0.0 394.3 0.0 -4,-5 0.8367 - 14.0 PRINCIPAL:4 ENSMUSG00000051977 Prdm9 ENSMUST00000130297 - NO_TRANSLATION retained_intron ENSMUSG00000051977 Prdm9 ENSMUST00000147532 ENSMUSP00000118454 TRANSLATION protein_coding - - 1 283.0 5.0 3.25 0.0 90.2 0.0 -4,-5 0.0 - 4.002 MINOR ENSMUSG00000051977 Prdm9 ENSMUST00000128267 - NO_TRANSLATION retained_intron ENSMUSG00000051977 Prdm9 ENSMUST00000233295 ENSMUSP00000156841 TRANSLATION protein_coding - CCDS49963.1 - 847.0 52.0 4.25 0.0 394.3 0.0 -4,-5 0.6167 - 14.0 ALTERNATIVE:2 ENSMUSG00000051977 Prdm9 ENSMUST00000139911 - NO_TRANSLATION retained_intron ENSMUSG00000002768 Mea1 ENSMUST00000002845 ENSMUSP00000002845 TRANSLATION protein_coding - CCDS28835.1 1 174.0 0.0 1.0 12.5 363.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000002768 Mea1 ENSMUST00000232732 ENSMUSP00000156392 TRANSLATION protein_coding - CCDS28835.1 - 174.0 0.0 1.0 12.5 363.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000002768 Mea1 ENSMUST00000232762 ENSMUSP00000156895 TRANSLATION protein_coding - CCDS28835.1 - 174.0 0.0 1.0 12.5 363.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000002768 Mea1 ENSMUST00000233612 ENSMUSP00000156967 TRANSLATION protein_coding - CCDS28835.1 - 174.0 0.0 1.0 12.5 363.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000002768 Mea1 ENSMUST00000233032 ENSMUSP00000156847 TRANSLATION protein_coding stop - - 131.0 0.0 0.0 0.0 240.2 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000002768 Mea1 ENSMUST00000233491 ENSMUSP00000156439 TRANSLATION protein_coding - CCDS28835.1 - 174.0 0.0 1.0 12.5 363.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000002768 Mea1 ENSMUST00000233385 ENSMUSP00000156624 TRANSLATION protein_coding stop - - 173.0 0.0 1.0 12.5 360.1 0.0 -4,-5 0.7891 3 -2.0 MINOR ENSMUSG00000002768 Mea1 ENSMUST00000233644 ENSMUSP00000156526 TRANSLATION protein_coding stop - - 75.0 0.0 0.0 0.0 148.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002768 Mea1 ENSMUST00000233430 ENSMUSP00000156593 TRANSLATION protein_coding - CCDS28835.1 - 174.0 0.0 1.0 12.5 363.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000052752 Traf7 ENSMUST00000177405 ENSMUSP00000135127 TRANSLATION nonsense_mediated_decay - - 3 80.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000176361 - NO_TRANSLATION retained_intron ENSMUSG00000052752 Traf7 ENSMUST00000177193 ENSMUSP00000135288 TRANSLATION protein_coding stop - 3 170.0 9.0 1.815 0.0 33.1 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000176900 - NO_TRANSLATION retained_intron ENSMUSG00000052752 Traf7 ENSMUST00000177025 ENSMUSP00000135583 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000177139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052752 Traf7 ENSMUST00000176092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052752 Traf7 ENSMUST00000176668 ENSMUSP00000135586 TRANSLATION nonsense_mediated_decay - - 1 81.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000177502 ENSMUSP00000134970 TRANSLATION nonsense_mediated_decay start - 3 76.0 7.0 1.315 0.0 33.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000176324 ENSMUSP00000135339 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000176237 ENSMUSP00000134946 TRANSLATION protein_coding stop - 5 271.0 21.0 2.605 0.0 33.1 0.0 -4,-2 0.0004 7 -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000177024 - NO_TRANSLATION retained_intron ENSMUSG00000052752 Traf7 ENSMUST00000176530 - NO_TRANSLATION retained_intron ENSMUSG00000052752 Traf7 ENSMUST00000175698 ENSMUSP00000135456 TRANSLATION nonsense_mediated_decay start - 3 84.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000176178 ENSMUSP00000134808 TRANSLATION nonsense_mediated_decay - - 3 54.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000088464 ENSMUSP00000085812 TRANSLATION protein_coding - CCDS50014.1 5 669.0 21.0 7.325 25.8 127.3 0.0 -4,-2 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000052752 Traf7 ENSMUST00000176086 ENSMUSP00000135845 TRANSLATION nonsense_mediated_decay - - 1 132.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000176633 - NO_TRANSLATION retained_intron ENSMUSG00000052752 Traf7 ENSMUST00000177154 ENSMUSP00000135874 TRANSLATION protein_coding stop - 5 228.0 13.0 2.145 0.0 33.1 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000176353 ENSMUSP00000135267 TRANSLATION protein_coding - CCDS50015.1 1 629.0 20.0 7.325 2.3 127.3 0.0 -4,-2 0.3761 12 17.542 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000177401 ENSMUSP00000135341 TRANSLATION nonsense_mediated_decay - - 2 45.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000176652 ENSMUSP00000134759 TRANSLATION protein_coding - CCDS50014.1 5 669.0 21.0 7.325 25.8 127.3 0.0 -4,-2 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000052752 Traf7 ENSMUST00000176805 - NO_TRANSLATION retained_intron ENSMUSG00000052752 Traf7 ENSMUST00000070777 ENSMUSP00000069334 TRANSLATION protein_coding - CCDS50015.1 5 629.0 20.0 7.325 2.3 127.3 0.0 -4,-2 0.3761 12 17.542 MINOR ENSMUSG00000052752 Traf7 ENSMUST00000176434 - NO_TRANSLATION retained_intron ENSMUSG00000052752 Traf7 ENSMUST00000175732 - NO_TRANSLATION retained_intron ENSMUSG00000061950 Ppp4r1 ENSMUST00000097293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061950 Ppp4r1 ENSMUST00000160664 ENSMUSP00000124690 TRANSLATION protein_coding - CCDS50167.1 1 934.0 0.0 10.13 5.4 79.7 0.0 -4,-5 1.0 21 10.0 PRINCIPAL:4 ENSMUSG00000061950 Ppp4r1 ENSMUST00000159646 ENSMUSP00000123796 TRANSLATION nonsense_mediated_decay start - 3 148.0 0.0 0.0 0.0 30.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000061950 Ppp4r1 ENSMUST00000162109 ENSMUSP00000125220 TRANSLATION nonsense_mediated_decay - - 1 376.0 0.0 4.93 0.0 49.4 0.0 -4,-5 0.0009 12 -2.0 MINOR ENSMUSG00000061950 Ppp4r1 ENSMUST00000162703 ENSMUSP00000124884 TRANSLATION protein_coding start - 3 97.0 0.0 1.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061950 Ppp4r1 ENSMUST00000182940 - NO_TRANSLATION retained_intron ENSMUSG00000061950 Ppp4r1 ENSMUST00000162788 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061950 Ppp4r1 ENSMUST00000162272 ENSMUSP00000124227 TRANSLATION protein_coding stop - 5 189.0 0.0 4.03 0.0 0.0 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000061950 Ppp4r1 ENSMUST00000073104 ENSMUSP00000072848 TRANSLATION protein_coding - CCDS28941.2 1 951.0 0.0 10.13 5.1 79.7 0.0 -4,-5 0.9716 21 9.864 ALTERNATIVE:1 ENSMUSG00000061950 Ppp4r1 ENSMUST00000161127 ENSMUSP00000123862 TRANSLATION protein_coding stop - 5 154.0 0.0 3.55 0.0 0.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000061950 Ppp4r1 ENSMUST00000161324 ENSMUSP00000124956 TRANSLATION protein_coding stop - 5 37.0 0.0 1.25 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000061950 Ppp4r1 ENSMUST00000162408 - NO_TRANSLATION retained_intron ENSMUSG00000061950 Ppp4r1 ENSMUST00000161100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095603 Or12d16-ps1 ENSMUST00000214704 ENSMUSP00000154161 TRANSLATION protein_coding - - 5 322.0 0.0 1.0 0.0 183.2 0.0 -4,-7 0.7947 - 12.0 PRINCIPAL:1 ENSMUSG00000095603 Or12d16-ps1 ENSMUST00000249311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095603 Or12d16-ps1 ENSMUST00000209002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072082 Ccnf ENSMUST00000234949 - NO_TRANSLATION retained_intron ENSMUSG00000072082 Ccnf ENSMUST00000234381 - NO_TRANSLATION retained_intron ENSMUSG00000072082 Ccnf ENSMUST00000234837 - NO_TRANSLATION retained_intron ENSMUSG00000072082 Ccnf ENSMUST00000235059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072082 Ccnf ENSMUST00000234708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072082 Ccnf ENSMUST00000234916 - NO_TRANSLATION retained_intron ENSMUSG00000072082 Ccnf ENSMUST00000115390 ENSMUSP00000111048 TRANSLATION protein_coding - CCDS37484.1 1 777.0 0.0 2.852 3.7 181.4 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000072082 Ccnf ENSMUST00000234541 ENSMUSP00000157253 TRANSLATION nonsense_mediated_decay start - - 124.0 0.0 0.32 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000072082 Ccnf ENSMUST00000234096 - NO_TRANSLATION retained_intron ENSMUSG00000072082 Ccnf ENSMUST00000234491 - NO_TRANSLATION retained_intron ENSMUSG00000024081 Cebpz ENSMUST00000232899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024081 Cebpz ENSMUST00000233371 - NO_TRANSLATION retained_intron ENSMUSG00000024081 Cebpz ENSMUST00000233595 - NO_TRANSLATION retained_intron ENSMUSG00000024081 Cebpz ENSMUST00000233484 ENSMUSP00000156479 TRANSLATION nonsense_mediated_decay - - - 461.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.003 5 -2.0 MINOR ENSMUSG00000024081 Cebpz ENSMUST00000024885 ENSMUSP00000024885 TRANSLATION protein_coding - CCDS28981.1 1 1052.0 0.0 0.0 1.0 190.6 0.0 -4,-5 1.0 16 6.0 PRINCIPAL:1 ENSMUSG00000004945 Tmem242 ENSMUST00000185896 ENSMUSP00000139712 TRANSLATION protein_coding - - 1 139.0 0.0 0.0 0.0 153.1 4.0 -4,-5 0.0343 1 4.35 MINOR ENSMUSG00000004945 Tmem242 ENSMUST00000188282 ENSMUSP00000139629 TRANSLATION protein_coding - - 1 118.0 0.0 0.0 0.0 153.7 4.0 -4,-5 0.0082 1 4.386 MINOR ENSMUSG00000004945 Tmem242 ENSMUST00000005053 ENSMUSP00000005053 TRANSLATION protein_coding - CCDS49930.1 1 140.0 0.0 0.0 10.3 180.6 4.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000041057 Wdr43 ENSMUST00000234424 - NO_TRANSLATION retained_intron ENSMUSG00000041057 Wdr43 ENSMUST00000235094 - NO_TRANSLATION retained_intron ENSMUSG00000041057 Wdr43 ENSMUST00000234947 - NO_TRANSLATION retained_intron ENSMUSG00000041057 Wdr43 ENSMUST00000234933 ENSMUSP00000157149 TRANSLATION nonsense_mediated_decay start - - 149.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000041057 Wdr43 ENSMUST00000234627 - NO_TRANSLATION retained_intron ENSMUSG00000041057 Wdr43 ENSMUST00000234656 - NO_TRANSLATION retained_intron ENSMUSG00000041057 Wdr43 ENSMUST00000234339 - NO_TRANSLATION retained_intron ENSMUSG00000041057 Wdr43 ENSMUST00000234560 ENSMUSP00000157071 TRANSLATION nonsense_mediated_decay - - - 483.0 0.0 3.29 0.0 38.2 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000041057 Wdr43 ENSMUST00000234794 - NO_TRANSLATION retained_intron ENSMUSG00000041057 Wdr43 ENSMUST00000234581 - NO_TRANSLATION retained_intron ENSMUSG00000041057 Wdr43 ENSMUST00000047086 ENSMUSP00000048337 TRANSLATION protein_coding - CCDS50180.1 1 677.0 0.0 4.9625 6.6 117.5 0.0 -4,-6 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000032739 Pram1 ENSMUST00000052079 ENSMUSP00000057065 TRANSLATION protein_coding - CCDS37569.1 1 675.0 0.0 2.23 0.0 106.9 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000032739 Pram1 ENSMUST00000166215 - NO_TRANSLATION retained_intron ENSMUSG00000032739 Pram1 ENSMUST00000116619 ENSMUSP00000112318 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000045744 Bricd5 ENSMUST00000054946 ENSMUSP00000059792 TRANSLATION protein_coding - CCDS28483.1 1 174.0 0.0 0.0 0.0 77.2 0.0 -4,-2 0.151 - 6.0 MINOR ENSMUSG00000045744 Bricd5 ENSMUST00000238986 ENSMUSP00000159026 TRANSLATION protein_coding - - - 225.0 0.0 0.0 4.9 77.2 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000045744 Bricd5 ENSMUST00000164508 ENSMUSP00000130417 TRANSLATION protein_coding - CCDS28483.1 1 174.0 0.0 0.0 0.0 77.2 0.0 -4,-2 0.151 - 6.0 MINOR ENSMUSG00000023903 Mmp25 ENSMUST00000233764 ENSMUSP00000156468 TRANSLATION nonsense_mediated_decay - - - 179.0 1.0 0.9 0.0 40.6 1.0 -4,-7 0.0028 1 -2.0 MINOR ENSMUSG00000023903 Mmp25 ENSMUST00000024696 ENSMUSP00000024696 TRANSLATION protein_coding - CCDS28452.1 1 615.0 22.0 4.67 0.1 351.3 1.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000023903 Mmp25 ENSMUST00000233276 ENSMUSP00000156672 TRANSLATION nonsense_mediated_decay - - - 178.0 1.0 0.9 0.0 40.6 1.0 -4,-7 0.0028 1 -2.0 MINOR ENSMUSG00000002379 Ndufa11 ENSMUST00000233832 ENSMUSP00000156832 TRANSLATION protein_coding - - - 76.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 1.338 MINOR ENSMUSG00000002379 Ndufa11 ENSMUST00000233233 ENSMUSP00000156737 TRANSLATION protein_coding - - - 116.0 0.0 3.462 0.0 36.3 0.0 -4,-6 0.0007 2 10.266 MINOR ENSMUSG00000002379 Ndufa11 ENSMUST00000233457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002379 Ndufa11 ENSMUST00000002452 ENSMUSP00000002452 TRANSLATION protein_coding - CCDS50155.1 1 143.0 0.0 4.33 10.7 35.6 0.0 -4,-6 1.0 5 14.886 PRINCIPAL:1 ENSMUSG00000057411 Antkmt ENSMUST00000237703 - NO_TRANSLATION retained_intron ENSMUSG00000057411 Antkmt ENSMUST00000236842 - NO_TRANSLATION retained_intron ENSMUSG00000057411 Antkmt ENSMUST00000235327 - NO_TRANSLATION retained_intron ENSMUSG00000057411 Antkmt ENSMUST00000072735 ENSMUSP00000072518 TRANSLATION protein_coding - CCDS28528.1 1 229.0 16.0 3.28 3.1 0.0 1.0 -4,-6 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000057411 Antkmt ENSMUST00000236161 ENSMUSP00000158350 TRANSLATION protein_coding - - - 151.0 16.0 2.03 0.3 0.0 0.0 -4,-5 0.0714 5 9.498 MINOR ENSMUSG00000057411 Antkmt ENSMUST00000237093 ENSMUSP00000158502 TRANSLATION protein_coding - - - 140.0 14.0 2.18 0.0 0.0 1.0 -4,-6 0.0187 2 8.466 MINOR ENSMUSG00000057411 Antkmt ENSMUST00000236683 ENSMUSP00000158301 TRANSLATION protein_coding - - - 151.0 16.0 2.03 0.3 0.0 0.0 -4,-5 0.0714 5 9.498 MINOR ENSMUSG00000024242 Map4k3 ENSMUST00000234585 - NO_TRANSLATION retained_intron ENSMUSG00000024242 Map4k3 ENSMUST00000234486 - NO_TRANSLATION retained_intron ENSMUSG00000024242 Map4k3 ENSMUST00000025089 ENSMUSP00000025089 TRANSLATION protein_coding - CCDS70847.1 5 894.0 18.0 9.425 15.9 445.1 0.0 -4,-5 1.0 16 18.0 PRINCIPAL:4 ENSMUSG00000024242 Map4k3 ENSMUST00000112389 ENSMUSP00000108008 TRANSLATION protein_coding - - 5 896.0 18.0 9.425 12.9 441.4 0.0 -4,-5 0.7665 16 17.196 ALTERNATIVE:1 ENSMUSG00000024242 Map4k3 ENSMUST00000234249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024242 Map4k3 ENSMUST00000234133 ENSMUSP00000157308 TRANSLATION protein_coding - - - 873.0 18.0 9.425 15.9 445.1 0.0 -4,-5 0.8826 16 18.0 ALTERNATIVE:1 ENSMUSG00000024242 Map4k3 ENSMUST00000234200 - NO_TRANSLATION retained_intron ENSMUSG00000024242 Map4k3 ENSMUST00000234481 - NO_TRANSLATION retained_intron ENSMUSG00000095253 Zfp799 ENSMUST00000179695 ENSMUSP00000136298 TRANSLATION protein_coding start - 3 647.0 64.0 2.45 0.4 296.4 0.0 -4,-5 0.6703 - -2.0 MINOR ENSMUSG00000095253 Zfp799 ENSMUST00000202988 ENSMUSP00000144480 TRANSLATION protein_coding - CCDS79530.1 1 648.0 64.0 2.45 0.4 296.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095253 Zfp799 ENSMUST00000202759 ENSMUSP00000144087 TRANSLATION protein_coding stop - 2 73.0 0.0 1.45 0.0 70.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095253 Zfp799 ENSMUST00000201876 ENSMUSP00000144187 TRANSLATION protein_coding - - 3 73.0 0.0 1.45 0.0 70.6 0.0 -4,-5 0.0 - 3.552 MINOR ENSMUSG00000095253 Zfp799 ENSMUST00000201499 ENSMUSP00000143907 TRANSLATION protein_coding - CCDS79529.1 1 64.0 0.0 1.6 0.3 70.6 0.0 -4,-5 0.0209 - 3.918 MINOR ENSMUSG00000023122 Sult1c2 ENSMUST00000023886 ENSMUSP00000023886 TRANSLATION protein_coding - CCDS28883.1 1 296.0 19.0 7.0 9.6 313.8 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000024068 Spast ENSMUST00000233554 ENSMUSP00000156766 TRANSLATION protein_coding start/stop - - 191.0 3.0 3.5 0.0 61.1 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000024068 Spast ENSMUST00000224711 ENSMUSP00000153469 TRANSLATION protein_coding - - - 613.0 13.0 10.83 1.6 159.6 2.0 -3,-1 0.7252 18 15.0 ALTERNATIVE:2 ENSMUSG00000024068 Spast ENSMUST00000233611 ENSMUSP00000156393 TRANSLATION protein_coding - - - 581.0 13.0 10.83 1.6 159.6 2.0 -3,-1 0.4758 16 15.0 ALTERNATIVE:2 ENSMUSG00000024068 Spast ENSMUST00000024869 ENSMUSP00000024869 TRANSLATION protein_coding - CCDS50181.1 1 614.0 13.0 10.83 1.6 159.6 2.0 -3,-1 1.0 18 15.0 PRINCIPAL:2 ENSMUSG00000024068 Spast ENSMUST00000225549 ENSMUSP00000153004 TRANSLATION nonsense_mediated_decay start - - 300.0 0.0 2.5 0.0 0.0 2.0 -1,-4 0.0076 7 -2.0 MINOR ENSMUSG00000014773 Dll1 ENSMUST00000140784 - NO_TRANSLATION retained_intron ENSMUSG00000014773 Dll1 ENSMUST00000129395 - NO_TRANSLATION retained_intron ENSMUSG00000014773 Dll1 ENSMUST00000124196 - NO_TRANSLATION retained_intron ENSMUSG00000014773 Dll1 ENSMUST00000152416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014773 Dll1 ENSMUST00000014917 ENSMUSP00000014917 TRANSLATION protein_coding - CCDS37452.1 1 722.0 17.0 6.816 6.1 351.7 0.0 4,-1 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000014773 Dll1 ENSMUST00000143460 ENSMUSP00000156341 TRANSLATION protein_coding stop - 3 73.0 0.0 1.0 0.0 61.7 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000050088 1600012H06Rik ENSMUST00000174004 ENSMUSP00000133628 TRANSLATION protein_coding - CCDS37444.1 1 185.0 0.0 0.0 9.2 357.4 0.0 2,-3 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000050088 1600012H06Rik ENSMUST00000052691 ENSMUSP00000093344 TRANSLATION protein_coding - CCDS37444.1 1 185.0 0.0 0.0 9.2 357.4 0.0 2,-3 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000050088 1600012H06Rik ENSMUST00000164837 ENSMUSP00000125970 TRANSLATION protein_coding - CCDS37444.1 1 185.0 0.0 0.0 9.2 357.4 0.0 2,-3 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000050088 1600012H06Rik ENSMUST00000174163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024131 Slc3a1 ENSMUST00000024944 ENSMUSP00000024944 TRANSLATION protein_coding - CCDS37711.1 1 685.0 22.0 10.0 9.3 281.2 0.0 -4,-5 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000060550 H2-Q7 ENSMUST00000116598 ENSMUSP00000112297 TRANSLATION protein_coding - CCDS57076.1 5 215.0 0.0 2.75 0.0 317.3 0.0 2,-2 0.0511 5 4.374 MINOR ENSMUSG00000060550 H2-Q7 ENSMUST00000173016 - NO_TRANSLATION retained_intron ENSMUSG00000060550 H2-Q7 ENSMUST00000071951 ENSMUSP00000071843 TRANSLATION protein_coding - CCDS28697.1 1 334.0 0.0 4.75 0.0 377.7 0.0 2,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000060550 H2-Q7 ENSMUST00000078205 ENSMUSP00000077335 TRANSLATION protein_coding - CCDS57075.1 5 310.0 0.0 3.75 0.0 377.7 0.0 2,-2 0.2479 5 10.002 MINOR ENSMUSG00000060550 H2-Q7 ENSMUST00000173788 - NO_TRANSLATION retained_intron ENSMUSG00000023963 Cyp39a1 ENSMUST00000233437 ENSMUSP00000156567 TRANSLATION protein_coding - - - 420.0 29.0 6.63 0.0 165.8 1.0 -2,-5 0.0066 7 16.29 MINOR ENSMUSG00000023963 Cyp39a1 ENSMUST00000233165 ENSMUSP00000156653 TRANSLATION protein_coding start - - 64.0 10.0 1.28 0.0 30.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000023963 Cyp39a1 ENSMUST00000170988 ENSMUSP00000130073 TRANSLATION protein_coding - CCDS28799.1 1 470.0 29.0 7.23 8.2 174.3 1.0 -2,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000023963 Cyp39a1 ENSMUST00000233627 ENSMUSP00000156870 TRANSLATION protein_coding - - - 404.0 19.0 5.053 0.0 118.8 1.0 -2,-5 0.0016 6 4.314 MINOR ENSMUSG00000067430 Zfp763 ENSMUST00000124465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067430 Zfp763 ENSMUST00000087654 ENSMUSP00000084936 TRANSLATION protein_coding - CCDS37560.1 1 588.0 52.0 1.0 0.1 251.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000024030 Abcg1 ENSMUST00000236391 ENSMUSP00000157735 TRANSLATION protein_coding stop - - 257.0 14.0 4.09 0.0 94.8 0.0 -3,-6 0.0 6 -2.0 MINOR ENSMUSG00000024030 Abcg1 ENSMUST00000139013 - NO_TRANSLATION retained_intron ENSMUSG00000024030 Abcg1 ENSMUST00000236241 ENSMUSP00000157940 TRANSLATION protein_coding start - - 146.0 0.0 1.3 0.0 42.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024030 Abcg1 ENSMUST00000236427 ENSMUSP00000157670 TRANSLATION protein_coding - - - 104.0 0.0 0.7 0.0 0.0 0.0 -3,-6 0.0 3 0.0 MINOR ENSMUSG00000024030 Abcg1 ENSMUST00000024829 ENSMUSP00000024829 TRANSLATION protein_coding - CCDS28602.1 1 666.0 14.0 8.35 25.2 256.1 0.0 -3,-6 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000023906 Cldn6 ENSMUST00000233364 ENSMUSP00000156806 TRANSLATION protein_coding - CCDS28457.1 - 219.0 0.0 1.0 34.9 114.7 3.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000023906 Cldn6 ENSMUST00000024699 ENSMUSP00000024699 TRANSLATION protein_coding - CCDS28457.1 1 219.0 0.0 1.0 34.9 114.7 3.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000023906 Cldn6 ENSMUST00000232719 ENSMUSP00000156498 TRANSLATION protein_coding - CCDS28457.1 - 219.0 0.0 1.0 34.9 114.7 3.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040680 Kremen2 ENSMUST00000046525 ENSMUSP00000046369 TRANSLATION protein_coding - CCDS28462.1 1 461.0 0.0 5.25 0.0 176.3 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000008482 Rnf151 ENSMUST00000008626 ENSMUSP00000008626 TRANSLATION protein_coding - CCDS37492.1 1 239.0 16.0 3.5 1.5 63.8 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000008482 Rnf151 ENSMUST00000234399 ENSMUSP00000157129 TRANSLATION protein_coding - - - 212.0 14.0 2.75 0.0 58.7 0.0 -4,-1 0.0054 - 14.688 MINOR ENSMUSG00000023960 Enpp5 ENSMUST00000154166 ENSMUSP00000122767 TRANSLATION protein_coding - CCDS28802.1 1 477.0 8.0 4.7 9.6 302.3 1.0 2,-1 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000023960 Enpp5 ENSMUST00000024756 ENSMUSP00000024756 TRANSLATION protein_coding - CCDS28802.1 1 477.0 8.0 4.7 9.6 302.3 1.0 2,-1 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000023960 Enpp5 ENSMUST00000126032 ENSMUSP00000115049 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 0.4 0.0 0.0 0.0 2,-2 0.0015 - -2.0 MINOR ENSMUSG00000073414 Mpig6b ENSMUST00000097337 ENSMUSP00000094950 TRANSLATION protein_coding - CCDS28676.1 1 197.0 0.0 0.33 0.0 278.1 1.0 3,-1 0.2009 2 6.3 MINOR ENSMUSG00000073414 Mpig6b ENSMUST00000174190 ENSMUSP00000133377 TRANSLATION protein_coding - CCDS57071.1 1 242.0 0.0 0.33 1.0 373.1 1.0 3,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000023809 Rps6ka2 ENSMUST00000231530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023809 Rps6ka2 ENSMUST00000232617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023809 Rps6ka2 ENSMUST00000232136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023809 Rps6ka2 ENSMUST00000024575 ENSMUSP00000024575 TRANSLATION protein_coding - CCDS28376.1 1 733.0 39.0 17.2 21.9 522.2 0.0 -4,-1 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000023809 Rps6ka2 ENSMUST00000232527 ENSMUSP00000156179 TRANSLATION protein_coding start - - 223.0 21.0 5.915 0.0 203.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000079444 Gm21981 ENSMUST00000143789 ENSMUSP00000119045 TRANSLATION nonsense_mediated_decay,RT - CCDS70823.1 5 369.0 15.0 3.6 0.3 111.5 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000024011 Pi16 ENSMUST00000114701 ENSMUSP00000110349 TRANSLATION protein_coding - CCDS28595.2 1 498.0 2.0 4.53 0.0 73.3 1.0 3,-2 0.5015 7 10.0 ALTERNATIVE:2 ENSMUSG00000024011 Pi16 ENSMUST00000234782 ENSMUSP00000156995 TRANSLATION protein_coding - - - 269.0 2.0 4.53 0.0 75.6 1.0 3,-2 0.8329 5 10.0 PRINCIPAL:2 ENSMUSG00000024011 Pi16 ENSMUST00000155348 ENSMUSP00000116183 TRANSLATION protein_coding - - 1 236.0 2.0 4.13 0.0 75.6 1.0 3,-2 0.1059 3 9.202 ALTERNATIVE:2 ENSMUSG00000024011 Pi16 ENSMUST00000234618 ENSMUSP00000157231 TRANSLATION protein_coding start/stop - - 132.0 2.0 2.3 0.0 53.7 0.0 3,-2 0.0054 2 -2.0 MINOR ENSMUSG00000024011 Pi16 ENSMUST00000114699 ENSMUSP00000110347 TRANSLATION protein_coding - - 1 269.0 2.0 4.53 0.0 75.6 1.0 3,-2 0.8329 5 10.0 PRINCIPAL:2 ENSMUSG00000024011 Pi16 ENSMUST00000135754 - NO_TRANSLATION retained_intron ENSMUSG00000050410 Tcf19 ENSMUST00000162683 ENSMUSP00000125659 TRANSLATION protein_coding stop - 1 147.0 0.0 0.0 0.0 45.4 0.0 -4,-7 0.0298 - -2.0 MINOR ENSMUSG00000050410 Tcf19 ENSMUST00000161012 ENSMUSP00000125310 TRANSLATION protein_coding - CCDS50089.1 1 263.0 0.0 0.0 1.8 45.4 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000050410 Tcf19 ENSMUST00000160885 ENSMUSP00000125167 TRANSLATION protein_coding - CCDS50089.1 1 263.0 0.0 0.0 1.8 45.4 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000050410 Tcf19 ENSMUST00000159009 ENSMUSP00000124449 TRANSLATION protein_coding stop - 2 201.0 0.0 0.0 0.0 45.4 0.0 -4,-7 0.0344 - -2.0 MINOR ENSMUSG00000039414 Heatr5b ENSMUST00000233073 - NO_TRANSLATION retained_intron ENSMUSG00000039414 Heatr5b ENSMUST00000232944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039414 Heatr5b ENSMUST00000097281 ENSMUSP00000094882 TRANSLATION protein_coding - CCDS37697.1 5 2070.0 0.0 0.0 18.4 0.0 0.0 -4,-6 1.0 44 4.0 PRINCIPAL:1 ENSMUSG00000039414 Heatr5b ENSMUST00000232917 - NO_TRANSLATION retained_intron ENSMUSG00000039414 Heatr5b ENSMUST00000232947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039414 Heatr5b ENSMUST00000233850 ENSMUSP00000156531 TRANSLATION protein_coding - - - 648.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0394 9 0.0 MINOR ENSMUSG00000071984 Fndc1 ENSMUST00000097425 ENSMUSP00000095036 TRANSLATION protein_coding - CCDS37431.1 5 1732.0 0.0 5.06 0.0 103.7 0.0 -4,-5 0.1787 21 7.578 MINOR ENSMUSG00000071984 Fndc1 ENSMUST00000097424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071984 Fndc1 ENSMUST00000240702 ENSMUSP00000159498 TRANSLATION protein_coding - - - 1781.0 0.0 5.526 0.0 103.7 0.0 3,-2 0.139 21 8.508 MINOR ENSMUSG00000071984 Fndc1 ENSMUST00000239425 ENSMUSP00000159298 TRANSLATION protein_coding - - - 1833.0 0.0 6.336 0.0 134.9 0.0 3,-2 1.0 21 12.0 PRINCIPAL:1 ENSMUSG00000071984 Fndc1 ENSMUST00000167580 ENSMUSP00000130996 TRANSLATION protein_coding stop - 2 150.0 0.0 1.32 0.0 0.0 0.0 3,-2 0.0014 3 -2.0 MINOR ENSMUSG00000071984 Fndc1 ENSMUST00000114579 - NO_TRANSLATION retained_intron ENSMUSG00000096910 Zfp955b ENSMUST00000099414 ENSMUSP00000097011 TRANSLATION protein_coding - CCDS50067.1 1 545.0 44.0 1.032 0.0 194.0 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000096910 Zfp955b ENSMUST00000234813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069743 Zfp820 ENSMUST00000232918 ENSMUSP00000156524 TRANSLATION protein_coding - - - 573.0 49.0 1.2 0.0 358.5 0.0 -4,-1 0.1973 - 16.662 MINOR ENSMUSG00000069743 Zfp820 ENSMUST00000084141 ENSMUSP00000081158 TRANSLATION protein_coding - CCDS49996.1 1 549.0 51.0 1.2 0.0 358.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000076439 Mog ENSMUST00000102665 ENSMUSP00000099726 TRANSLATION protein_coding - CCDS28734.1 1 247.0 0.0 2.66 3.9 52.5 2.0 3,-2 1.0 12 9.0 PRINCIPAL:2 ENSMUSG00000076439 Mog ENSMUST00000167275 ENSMUSP00000129489 TRANSLATION protein_coding - - 1 208.0 0.0 2.66 1.0 52.5 1.0 3,-2 0.2852 9 8.0 ALTERNATIVE:2 ENSMUSG00000024171 Prss28 ENSMUST00000234259 ENSMUSP00000156975 TRANSLATION protein_coding - CCDS28515.1 - 274.0 3.0 4.0 0.0 191.0 0.0 1,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024171 Prss28 ENSMUST00000015267 ENSMUSP00000015267 TRANSLATION protein_coding - CCDS28515.1 1 274.0 3.0 4.0 0.0 191.0 0.0 1,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041199 Rpusd1 ENSMUST00000047273 ENSMUSP00000043825 TRANSLATION protein_coding - CCDS28524.1 1 306.0 2.0 5.08 0.0 88.5 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000041199 Rpusd1 ENSMUST00000235645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041199 Rpusd1 ENSMUST00000237785 ENSMUSP00000158547 TRANSLATION protein_coding - CCDS28524.1 - 306.0 2.0 5.08 0.0 88.5 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000041199 Rpusd1 ENSMUST00000237183 ENSMUSP00000158085 TRANSLATION protein_coding - - - 177.0 0.0 2.33 2.3 30.9 0.0 -4,-5 0.4249 - 3.592 MINOR ENSMUSG00000064308 2410137M14Rik ENSMUST00000173707 ENSMUSP00000133725 TRANSLATION protein_coding - - 1 125.0 0.0 1.225 0.0 48.5 0.0 -4,-5 0.7732 - 8.0 PRINCIPAL:2 ENSMUSG00000064308 2410137M14Rik ENSMUST00000039846 ENSMUSP00000044846 TRANSLATION protein_coding - CCDS50104.1 1 162.0 0.0 1.225 0.0 48.5 0.0 -4,-5 0.3227 - 8.0 ALTERNATIVE:2 ENSMUSG00000042644 Itpr3 ENSMUST00000235521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042644 Itpr3 ENSMUST00000049308 ENSMUSP00000038150 TRANSLATION protein_coding - CCDS28560.1 1 2670.0 5.0 31.85 9.0 952.5 0.0 -4,-6 1.0 55 20.0 PRINCIPAL:1 ENSMUSG00000043537 Vmn1r225 ENSMUST00000233346 ENSMUSP00000156801 TRANSLATION protein_coding - - - 232.0 0.0 0.0 0.0 81.9 6.0 -4,-7 0.0999 - 0.0 ALTERNATIVE:2 ENSMUSG00000043537 Vmn1r225 ENSMUST00000061660 ENSMUSP00000056068 TRANSLATION protein_coding - CCDS28424.1 - 298.0 0.0 0.0 1.1 80.6 7.0 -3,-5 0.8811 - 1.0 PRINCIPAL:2 ENSMUSG00000043537 Vmn1r225 ENSMUST00000233982 ENSMUSP00000156633 TRANSLATION protein_coding - CCDS28424.1 - 298.0 0.0 0.0 1.1 80.6 7.0 -3,-5 0.8811 - 1.0 PRINCIPAL:2 ENSMUSG00000038910 Plcl2 ENSMUST00000233823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038910 Plcl2 ENSMUST00000043938 ENSMUSP00000046584 TRANSLATION protein_coding - CCDS28875.1 1 1128.0 12.0 0.4 5.8 529.8 0.0 -4,-6 1.0 23 20.0 PRINCIPAL:1 ENSMUSG00000036368 Rmdn2 ENSMUST00000223924 ENSMUSP00000153264 TRANSLATION protein_coding stop - - 98.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0154 1 -2.0 MINOR ENSMUSG00000036368 Rmdn2 ENSMUST00000086570 ENSMUSP00000083761 TRANSLATION protein_coding start/stop - 1 309.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0287 1 -2.0 MINOR ENSMUSG00000036368 Rmdn2 ENSMUST00000223555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036368 Rmdn2 ENSMUST00000226004 ENSMUSP00000152929 TRANSLATION protein_coding start - - 57.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.008 1 -2.0 MINOR ENSMUSG00000036368 Rmdn2 ENSMUST00000224097 ENSMUSP00000153145 TRANSLATION protein_coding start - - 25.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0077 - -2.0 MINOR ENSMUSG00000036368 Rmdn2 ENSMUST00000224618 ENSMUSP00000153203 TRANSLATION protein_coding stop - - 98.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0004 6 -2.0 MINOR ENSMUSG00000036368 Rmdn2 ENSMUST00000224014 ENSMUSP00000153400 TRANSLATION protein_coding stop - - 122.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0154 1 -2.0 MINOR ENSMUSG00000036368 Rmdn2 ENSMUST00000225357 ENSMUSP00000153443 TRANSLATION protein_coding - CCDS28985.1 - 410.0 0.0 7.0 6.2 0.0 0.0 -4,-7 1.0 9 8.0 PRINCIPAL:1 ENSMUSG00000036368 Rmdn2 ENSMUST00000040368 ENSMUSP00000044543 TRANSLATION protein_coding - CCDS28985.1 1 410.0 0.0 7.0 6.2 0.0 0.0 -4,-7 1.0 9 8.0 PRINCIPAL:1 ENSMUSG00000024224 Clpsl2 ENSMUST00000025061 ENSMUSP00000025061 TRANSLATION protein_coding - CCDS50047.1 1 102.0 0.0 2.0 0.4 51.9 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000061046 Haghl ENSMUST00000143248 - NO_TRANSLATION retained_intron ENSMUSG00000061046 Haghl ENSMUST00000129917 - NO_TRANSLATION retained_intron ENSMUSG00000061046 Haghl ENSMUST00000145053 ENSMUSP00000114961 TRANSLATION protein_coding stop - 3 113.0 5.0 3.33 0.0 22.9 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000061046 Haghl ENSMUST00000077938 ENSMUSP00000077091 TRANSLATION protein_coding - CCDS28527.1 1 283.0 10.0 7.58 9.6 106.7 0.0 -4,-6 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000061046 Haghl ENSMUST00000140738 ENSMUSP00000116841 TRANSLATION protein_coding - CCDS70773.1 1 240.0 10.0 6.68 0.0 94.2 0.0 -4,-6 0.0087 4 15.45 MINOR ENSMUSG00000061046 Haghl ENSMUST00000150324 ENSMUSP00000119647 TRANSLATION protein_coding - CCDS28527.1 1 283.0 10.0 7.58 9.6 106.7 0.0 -4,-6 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000061046 Haghl ENSMUST00000148986 - NO_TRANSLATION retained_intron ENSMUSG00000061046 Haghl ENSMUST00000137587 - NO_TRANSLATION retained_intron ENSMUSG00000061046 Haghl ENSMUST00000133071 ENSMUSP00000120885 TRANSLATION protein_coding - CCDS70772.1 1 235.0 10.0 6.08 0.0 76.8 0.0 -4,-6 0.0055 6 13.206 MINOR ENSMUSG00000061046 Haghl ENSMUST00000138759 ENSMUSP00000115538 TRANSLATION protein_coding - CCDS70772.1 1 235.0 10.0 6.08 0.0 76.8 0.0 -4,-6 0.0055 6 13.206 MINOR ENSMUSG00000061046 Haghl ENSMUST00000138100 - NO_TRANSLATION retained_intron ENSMUSG00000024125 Sbpl ENSMUST00000235047 ENSMUSP00000157273 TRANSLATION protein_coding - CCDS37481.1 - 232.0 0.0 2.0 0.0 49.5 0.0 3,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000024125 Sbpl ENSMUST00000024939 ENSMUSP00000024939 TRANSLATION protein_coding - CCDS37481.1 1 232.0 0.0 2.0 0.0 49.5 0.0 3,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000041881 Ndufa7 ENSMUST00000173946 - NO_TRANSLATION retained_intron ENSMUSG00000041881 Ndufa7 ENSMUST00000173807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041881 Ndufa7 ENSMUST00000173182 - NO_TRANSLATION retained_intron ENSMUSG00000041881 Ndufa7 ENSMUST00000173175 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041881 Ndufa7 ENSMUST00000173132 ENSMUSP00000133882 TRANSLATION nonsense_mediated_decay - - 2 40.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000041881 Ndufa7 ENSMUST00000173556 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041881 Ndufa7 ENSMUST00000048249 ENSMUSP00000039692 TRANSLATION protein_coding - CCDS28631.1 1 113.0 0.0 2.275 35.9 125.6 0.0 -4,-2 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000041881 Ndufa7 ENSMUST00000234470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041881 Ndufa7 ENSMUST00000174847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041881 Ndufa7 ENSMUST00000174498 - NO_TRANSLATION retained_intron ENSMUSG00000024409 Psors1c2 ENSMUST00000025273 ENSMUSP00000025273 TRANSLATION protein_coding - CCDS50091.1 1 135.0 0.0 0.0 10.0 178.3 0.0 3,-2 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000073468 Sft2d1 ENSMUST00000128087 - NO_TRANSLATION retained_intron ENSMUSG00000073468 Sft2d1 ENSMUST00000154553 ENSMUSP00000117294 TRANSLATION protein_coding - CCDS49945.1 1 159.0 0.0 4.28 34.7 130.6 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073468 Sft2d1 ENSMUST00000130782 ENSMUSP00000115640 TRANSLATION nonsense_mediated_decay - - 5 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073468 Sft2d1 ENSMUST00000145276 ENSMUSP00000115979 TRANSLATION nonsense_mediated_decay - - 1 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073468 Sft2d1 ENSMUST00000141213 - NO_TRANSLATION retained_intron ENSMUSG00000073468 Sft2d1 ENSMUST00000153406 - NO_TRANSLATION retained_intron ENSMUSG00000073468 Sft2d1 ENSMUST00000135627 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073468 Sft2d1 ENSMUST00000150728 - NO_TRANSLATION retained_intron ENSMUSG00000073468 Sft2d1 ENSMUST00000135964 - NO_TRANSLATION retained_intron ENSMUSG00000015579 Nkx2-5 ENSMUST00000015723 ENSMUSP00000015723 TRANSLATION protein_coding - CCDS28556.1 1 318.0 0.0 0.8 7.3 71.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000015579 Nkx2-5 ENSMUST00000235454 ENSMUSP00000157537 TRANSLATION protein_coding stop - - 317.0 0.0 0.8 7.3 71.8 0.0 -4,-6 0.8232 - -2.0 MINOR ENSMUSG00000023460 Rab12 ENSMUST00000135620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023460 Rab12 ENSMUST00000070538 ENSMUSP00000070134 TRANSLATION protein_coding - - 1 291.0 23.0 4.0 0.3 198.0 0.0 -4,-2 0.8054 10 18.0 PRINCIPAL:1 ENSMUSG00000023460 Rab12 ENSMUST00000155026 - NO_TRANSLATION retained_intron ENSMUSG00000023460 Rab12 ENSMUST00000146279 - NO_TRANSLATION retained_intron ENSMUSG00000017831 Rab5a ENSMUST00000233347 - NO_TRANSLATION retained_intron ENSMUSG00000017831 Rab5a ENSMUST00000017975 ENSMUSP00000017975 TRANSLATION protein_coding - CCDS28879.1 1 215.0 21.0 4.4 36.9 210.8 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000061972 Or1o4 ENSMUST00000216328 ENSMUSP00000148900 TRANSLATION protein_coding - CCDS28743.1 5 305.0 0.0 1.0 2.9 196.6 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000061972 Or1o4 ENSMUST00000077585 ENSMUSP00000076781 TRANSLATION protein_coding - CCDS28743.1 - 305.0 0.0 1.0 2.9 196.6 5.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000061972 Or1o4 ENSMUST00000216370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002504 Nherf2 ENSMUST00000234557 ENSMUSP00000157103 TRANSLATION protein_coding - - - 316.0 0.0 5.4 1.8 218.5 0.0 -4,-2 0.1588 17 11.612 MINOR ENSMUSG00000002504 Nherf2 ENSMUST00000019684 ENSMUSP00000019684 TRANSLATION protein_coding - CCDS28489.1 1 226.0 0.0 3.8625 1.1 165.0 0.0 -4,-2 0.0171 12 5.112 MINOR ENSMUSG00000002504 Nherf2 ENSMUST00000234505 ENSMUSP00000157065 TRANSLATION protein_coding - - - 205.0 0.0 3.675 0.0 160.7 0.0 -4,-2 0.0015 10 4.446 MINOR ENSMUSG00000002504 Nherf2 ENSMUST00000235042 - NO_TRANSLATION retained_intron ENSMUSG00000002504 Nherf2 ENSMUST00000002572 ENSMUSP00000002572 TRANSLATION protein_coding - CCDS28488.1 1 337.0 0.0 5.5875 7.6 222.8 0.0 -4,-2 1.0 19 14.0 PRINCIPAL:1 ENSMUSG00000002504 Nherf2 ENSMUST00000234121 ENSMUSP00000157037 TRANSLATION protein_coding - - - 231.0 0.0 3.5875 1.0 165.0 0.0 -4,-5 0.0135 12 4.53 MINOR ENSMUSG00000002504 Nherf2 ENSMUST00000234912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041565 L3mbtl4 ENSMUST00000150573 - NO_TRANSLATION retained_intron ENSMUSG00000041565 L3mbtl4 ENSMUST00000124543 ENSMUSP00000121045 TRANSLATION protein_coding - - 5 612.0 0.0 10.13 3.3 394.7 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000041565 L3mbtl4 ENSMUST00000139383 ENSMUSP00000117626 TRANSLATION nonsense_mediated_decay - - 1 292.0 0.0 5.35 0.0 192.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000041565 L3mbtl4 ENSMUST00000233696 - NO_TRANSLATION retained_intron ENSMUSG00000002500 Rpl3l ENSMUST00000183214 ENSMUSP00000138489 TRANSLATION protein_coding stop - 3 133.0 0.0 3.0 0.0 184.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002500 Rpl3l ENSMUST00000170239 ENSMUSP00000129325 TRANSLATION protein_coding - CCDS50019.1 5 407.0 0.0 9.5 12.5 582.5 0.0 -4,-1 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000002500 Rpl3l ENSMUST00000045186 ENSMUSP00000038326 TRANSLATION protein_coding - CCDS37494.1 1 240.0 0.0 6.0 0.7 313.8 0.0 -4,-6 0.0069 5 0.0 MINOR ENSMUSG00000002017 Fam98a ENSMUST00000235026 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002017 Fam98a ENSMUST00000141969 - NO_TRANSLATION retained_intron ENSMUSG00000002017 Fam98a ENSMUST00000112507 ENSMUSP00000108126 TRANSLATION protein_coding - CCDS28974.2 1 515.0 0.0 0.0 9.2 443.7 0.0 -4,-5 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000002017 Fam98a ENSMUST00000234785 ENSMUSP00000157054 TRANSLATION protein_coding - - - 308.0 0.0 0.0 0.0 368.5 0.0 -4,-5 0.0016 6 1.488 MINOR ENSMUSG00000002017 Fam98a ENSMUST00000140729 - NO_TRANSLATION retained_intron ENSMUSG00000044985 Or2b4 ENSMUST00000216478 ENSMUSP00000150687 TRANSLATION protein_coding - CCDS28766.1 5 315.0 0.0 1.0 10.4 167.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044985 Or2b4 ENSMUST00000217365 ENSMUSP00000149754 TRANSLATION protein_coding - CCDS28766.1 5 315.0 0.0 1.0 10.4 167.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044985 Or2b4 ENSMUST00000215168 ENSMUSP00000148904 TRANSLATION protein_coding - CCDS28766.1 5 315.0 0.0 1.0 10.4 167.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044985 Or2b4 ENSMUST00000053599 ENSMUSP00000050544 TRANSLATION protein_coding - CCDS28766.1 - 315.0 0.0 1.0 10.4 167.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000002308 Cd320 ENSMUST00000234506 - NO_TRANSLATION retained_intron ENSMUSG00000002308 Cd320 ENSMUST00000173418 - NO_TRANSLATION retained_intron ENSMUSG00000002308 Cd320 ENSMUST00000002379 ENSMUSP00000002379 TRANSLATION protein_coding - CCDS28632.1 1 260.0 12.0 1.5 1.4 85.4 2.0 4,2 1.0 2 15.0 PRINCIPAL:2 ENSMUSG00000002308 Cd320 ENSMUST00000087559 ENSMUSP00000084839 TRANSLATION protein_coding - CCDS79533.1 1 246.0 12.0 1.5 0.0 85.4 2.0 0,-4 0.3303 2 14.0 ALTERNATIVE:2 ENSMUSG00000095625 Esp24 ENSMUST00000232955 ENSMUSP00000156516 TRANSLATION protein_coding - CCDS57086.1 - 68.0 0.0 0.0 0.0 61.1 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000095625 Esp24 ENSMUST00000180245 ENSMUSP00000137640 TRANSLATION protein_coding - CCDS57086.1 5 68.0 0.0 0.0 0.0 61.1 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000024055 Cyp4f13 ENSMUST00000075253 ENSMUSP00000074733 TRANSLATION protein_coding - CCDS28622.1 1 523.0 35.0 12.16 0.0 430.6 2.0 2,-2 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000024055 Cyp4f13 ENSMUST00000145683 ENSMUSP00000118919 TRANSLATION nonsense_mediated_decay - - 5 87.0 5.0 1.266 0.0 0.0 2.0 1,-2 0.0039 - -2.0 MINOR ENSMUSG00000024055 Cyp4f13 ENSMUST00000235098 - NO_TRANSLATION retained_intron ENSMUSG00000024055 Cyp4f13 ENSMUST00000234534 - NO_TRANSLATION retained_intron ENSMUSG00000024055 Cyp4f13 ENSMUST00000139353 ENSMUSP00000123282 TRANSLATION protein_coding - - 1 414.0 30.0 9.0 0.0 354.5 2.0 1,-2 0.011 5 4.098 MINOR ENSMUSG00000024055 Cyp4f13 ENSMUST00000234683 ENSMUSP00000157210 TRANSLATION nonsense_mediated_decay - - - 73.0 5.0 1.0 0.0 0.0 2.0 1,-2 0.0039 - -2.0 MINOR ENSMUSG00000024055 Cyp4f13 ENSMUST00000234946 ENSMUSP00000157120 TRANSLATION nonsense_mediated_decay - - - 73.0 5.0 1.0 0.0 0.0 2.0 1,-2 0.0039 - -2.0 MINOR ENSMUSG00000024055 Cyp4f13 ENSMUST00000234532 - NO_TRANSLATION retained_intron ENSMUSG00000024055 Cyp4f13 ENSMUST00000137222 ENSMUSP00000123495 TRANSLATION nonsense_mediated_decay - - 5 115.0 5.0 2.5 0.0 0.0 2.0 2,-2 0.0086 - -2.0 MINOR ENSMUSG00000024055 Cyp4f13 ENSMUST00000234653 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024055 Cyp4f13 ENSMUST00000146718 - NO_TRANSLATION retained_intron ENSMUSG00000024055 Cyp4f13 ENSMUST00000123653 - NO_TRANSLATION retained_intron ENSMUSG00000024055 Cyp4f13 ENSMUST00000141325 ENSMUSP00000117168 TRANSLATION nonsense_mediated_decay - - 3 118.0 5.0 2.5 0.0 0.0 2.0 2,-2 0.0086 - -2.0 MINOR ENSMUSG00000024055 Cyp4f13 ENSMUST00000234083 ENSMUSP00000157023 TRANSLATION protein_coding stop - - 216.0 6.0 5.16 0.0 120.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000044533 Rps2 ENSMUST00000129984 - NO_TRANSLATION retained_intron ENSMUSG00000044533 Rps2 ENSMUST00000054289 ENSMUSP00000092502 TRANSLATION protein_coding - CCDS37493.1 1 293.0 0.0 3.75 8.9 208.1 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000044533 Rps2 ENSMUST00000129580 - NO_TRANSLATION retained_intron ENSMUSG00000044533 Rps2 ENSMUST00000132803 - NO_TRANSLATION retained_intron ENSMUSG00000044533 Rps2 ENSMUST00000146867 ENSMUSP00000120715 TRANSLATION protein_coding - - 5 302.0 0.0 3.0 0.0 208.1 0.0 -4,-5 0.0315 11 10.5 MINOR ENSMUSG00000044533 Rps2 ENSMUST00000170715 ENSMUSP00000131474 TRANSLATION protein_coding - CCDS37493.1 1 293.0 0.0 3.75 8.9 208.1 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000044533 Rps2 ENSMUST00000152407 ENSMUSP00000114529 TRANSLATION protein_coding stop - 5 269.0 0.0 3.0 0.0 208.1 0.0 -4,-5 0.0042 11 -2.0 MINOR ENSMUSG00000044533 Rps2 ENSMUST00000122809 - NO_TRANSLATION retained_intron ENSMUSG00000015126 Tsr3 ENSMUST00000249840 ENSMUSP00000159943 TRANSLATION protein_coding - - - 111.0 0.0 1.83 0.0 53.5 0.0 -,- 0.0 1 1.0 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000249828 ENSMUSP00000159933 TRANSLATION nonsense_mediated_decay - - - 82.0 0.0 0.0 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000249837 ENSMUSP00000159941 TRANSLATION protein_coding - - - 331.0 0.0 5.74 0.1 222.3 0.0 -,- 0.0828 2 7.334 ALTERNATIVE:2 ENSMUSG00000015126 Tsr3 ENSMUST00000249831 ENSMUSP00000159936 TRANSLATION protein_coding - - - 366.0 0.0 5.41 0.0 233.6 0.0 -,- 0.0232 2 7.34 ALTERNATIVE:2 ENSMUSG00000015126 Tsr3 ENSMUST00000249841 ENSMUSP00000159944 TRANSLATION nonsense_mediated_decay - - - 90.0 0.0 0.0 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000249830 ENSMUSP00000159935 TRANSLATION protein_coding - - - 316.0 0.0 5.08 0.1 213.6 0.0 -,- 0.0406 1 5.68 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000063574 ENSMUSP00000068511 TRANSLATION protein_coding - CCDS28512.1 1 323.0 0.0 5.41 0.4 233.6 0.0 -,- 1.0 2 7.34 PRINCIPAL:2 ENSMUSG00000015126 Tsr3 ENSMUST00000249829 ENSMUSP00000159934 TRANSLATION nonsense_mediated_decay - - - 108.0 0.0 0.0 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000249839 ENSMUSP00000159942 TRANSLATION protein_coding - - - 82.0 0.0 0.0 0.0 0.0 0.0 -,- 0.0 - 0.0 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000249833 ENSMUSP00000159937 TRANSLATION protein_coding - - - 228.0 0.0 4.075 0.0 164.2 0.0 -,- 0.0 1 3.004 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000249832 - NO_TRANSLATION retained_intron ENSMUSG00000015126 Tsr3 ENSMUST00000249836 ENSMUSP00000159940 TRANSLATION protein_coding - - - 333.0 0.0 5.41 0.0 233.6 0.0 -,- 0.0701 2 7.34 ALTERNATIVE:2 ENSMUSG00000015126 Tsr3 ENSMUST00000249842 ENSMUSP00000159945 TRANSLATION nonsense_mediated_decay - - - 44.0 0.0 0.0 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000249827 ENSMUSP00000159932 TRANSLATION nonsense_mediated_decay - - - 48.0 0.0 0.0 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000249835 ENSMUSP00000159939 TRANSLATION nonsense_mediated_decay - - - 143.0 0.0 2.028 0.0 53.5 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000249834 ENSMUSP00000159938 TRANSLATION nonsense_mediated_decay - - - 124.0 0.0 1.83 0.0 53.5 0.0 -,- 0.0 1 -2.0 MINOR ENSMUSG00000015126 Tsr3 ENSMUST00000249838 - NO_TRANSLATION retained_intron ENSMUSG00000090655 Vmn2r120 ENSMUST00000234883 ENSMUSP00000157042 TRANSLATION protein_coding - - - 712.0 4.0 2.798 0.0 345.5 15.0 4,-1 0.0164 - 11.058 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000240712 ENSMUSP00000159505 TRANSLATION protein_coding - - - 850.0 4.0 3.268 0.0 413.0 15.0 4,-1 0.9182 - 12.0 PRINCIPAL:4 ENSMUSG00000090655 Vmn2r120 ENSMUST00000234476 ENSMUSP00000157076 TRANSLATION protein_coding - - - 636.0 4.0 2.398 0.0 345.5 15.0 4,-1 0.0112 - 10.26 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234642 ENSMUSP00000157051 TRANSLATION nonsense_mediated_decay - - - 47.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0021 - -2.0 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234443 ENSMUSP00000157057 TRANSLATION protein_coding - - - 880.0 4.0 3.118 0.0 397.0 15.0 4,-1 0.1581 - 11.7 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234908 ENSMUSP00000156999 TRANSLATION nonsense_mediated_decay - - - 71.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0021 - -2.0 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234400 ENSMUSP00000157041 TRANSLATION nonsense_mediated_decay - - - 82.0 0.0 0.15 0.0 0.0 0.0 4,-1 0.0014 - -2.0 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234162 ENSMUSP00000157015 TRANSLATION protein_coding - - - 376.0 0.0 1.598 0.0 72.3 0.0 4,-1 0.0018 - 2.658 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234508 ENSMUSP00000157163 TRANSLATION protein_coding - - - 688.0 4.0 2.798 0.0 357.9 15.0 4,-1 0.02 - 11.058 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234852 ENSMUSP00000157184 TRANSLATION protein_coding - - - 804.0 4.0 2.718 0.0 383.0 15.0 4,-1 0.072 - 10.902 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234299 ENSMUSP00000157246 TRANSLATION nonsense_mediated_decay - - - 52.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0021 - -2.0 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234578 ENSMUSP00000157164 TRANSLATION protein_coding - - - 520.0 0.0 1.918 0.0 139.8 0.0 4,-1 0.0008 - 3.3 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234917 ENSMUSP00000157151 TRANSLATION nonsense_mediated_decay - - - 67.0 0.0 0.15 0.0 0.0 0.0 4,-1 0.0014 - -2.0 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234878 ENSMUSP00000157258 TRANSLATION nonsense_mediated_decay - - - 86.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0021 - -2.0 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234401 ENSMUSP00000156988 TRANSLATION protein_coding - - - 612.0 4.0 2.398 0.0 357.9 15.0 4,-1 0.0188 - 10.26 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000165781 ENSMUSP00000129296 TRANSLATION protein_coding - CCDS50161.1 5 856.0 4.0 3.118 0.0 413.0 15.0 4,-1 0.7989 - 11.7 ALTERNATIVE:2 ENSMUSG00000090655 Vmn2r120 ENSMUST00000234962 ENSMUSP00000157106 TRANSLATION nonsense_mediated_decay - - - 70.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0021 - -2.0 MINOR ENSMUSG00000090655 Vmn2r120 ENSMUST00000234679 - NO_TRANSLATION retained_intron ENSMUSG00000090655 Vmn2r120 ENSMUST00000234037 - NO_TRANSLATION retained_intron ENSMUSG00000024212 Mllt1 ENSMUST00000025053 ENSMUSP00000025053 TRANSLATION protein_coding - CCDS28918.1 1 547.0 0.0 4.7 5.5 88.1 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000024212 Mllt1 ENSMUST00000233829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024212 Mllt1 ENSMUST00000233063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024212 Mllt1 ENSMUST00000233854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053436 Mapk14 ENSMUST00000151613 - NO_TRANSLATION retained_intron ENSMUSG00000053436 Mapk14 ENSMUST00000114758 ENSMUSP00000110406 TRANSLATION protein_coding - - 1 258.0 19.0 7.08 0.0 197.9 0.0 -4,-6 0.0034 7 5.67 MINOR ENSMUSG00000053436 Mapk14 ENSMUST00000114752 ENSMUSP00000110400 TRANSLATION protein_coding - CCDS50049.1 1 283.0 13.0 7.58 8.6 175.7 0.0 -4,-5 0.1561 8 3.56 MINOR ENSMUSG00000053436 Mapk14 ENSMUST00000004990 ENSMUSP00000004990 TRANSLATION protein_coding - CCDS50048.1 1 360.0 20.0 9.58 34.9 221.9 0.0 -4,-6 1.0 9 15.334 PRINCIPAL:4 ENSMUSG00000053436 Mapk14 ENSMUST00000233095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053436 Mapk14 ENSMUST00000062694 ENSMUSP00000061958 TRANSLATION protein_coding - CCDS28583.1 1 360.0 21.0 9.58 34.9 220.6 0.0 -4,-6 0.9919 9 16.0 ALTERNATIVE:1 ENSMUSG00000053436 Mapk14 ENSMUST00000114754 ENSMUSP00000110402 TRANSLATION protein_coding - CCDS50049.1 1 283.0 13.0 7.58 8.6 175.7 0.0 -4,-5 0.1561 8 3.56 MINOR ENSMUSG00000053436 Mapk14 ENSMUST00000233811 ENSMUSP00000156603 TRANSLATION nonsense_mediated_decay - - - 50.0 5.0 1.066 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053436 Mapk14 ENSMUST00000124886 ENSMUSP00000116914 TRANSLATION protein_coding stop - 3 227.0 18.0 6.33 0.0 193.3 0.0 -4,-6 0.0015 5 -2.0 MINOR ENSMUSG00000053436 Mapk14 ENSMUST00000233250 ENSMUSP00000156692 TRANSLATION protein_coding - - - 307.0 19.0 7.08 6.4 197.9 0.0 -4,-6 0.207 7 6.306 MINOR ENSMUSG00000038954 Supt3 ENSMUST00000050630 ENSMUSP00000050783 TRANSLATION protein_coding - CCDS37625.1 1 374.0 0.0 0.3175 10.3 118.7 0.0 -4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000038954 Supt3 ENSMUST00000129416 ENSMUSP00000120197 TRANSLATION protein_coding start/stop - 1 406.0 0.0 0.3175 0.0 118.7 0.0 -4,-2 0.0568 2 -2.0 MINOR ENSMUSG00000038954 Supt3 ENSMUST00000127798 ENSMUSP00000121148 TRANSLATION protein_coding stop - 1 382.0 0.0 0.3175 0.0 118.7 0.0 -4,-1 0.1127 - -2.0 MINOR ENSMUSG00000038954 Supt3 ENSMUST00000130623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090083 Rnf8 ENSMUST00000234498 ENSMUSP00000157381 TRANSLATION protein_coding - - - 138.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000090083 Rnf8 ENSMUST00000172800 - NO_TRANSLATION retained_intron ENSMUSG00000090083 Rnf8 ENSMUST00000161952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090083 Rnf8 ENSMUST00000173449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090083 Rnf8 ENSMUST00000234245 - NO_TRANSLATION retained_intron ENSMUSG00000090083 Rnf8 ENSMUST00000024817 ENSMUSP00000024817 TRANSLATION protein_coding - CCDS37538.1 1 488.0 8.0 5.4 7.2 88.8 0.0 -4,-6 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000090083 Rnf8 ENSMUST00000234362 ENSMUSP00000157202 TRANSLATION nonsense_mediated_decay - - - 199.0 0.0 2.4 0.0 50.0 0.0 -4,-6 0.0009 2 -2.0 MINOR ENSMUSG00000090083 Rnf8 ENSMUST00000162588 ENSMUSP00000124566 TRANSLATION protein_coding stop - 3 259.0 0.0 1.4 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000090083 Rnf8 ENSMUST00000161242 - NO_TRANSLATION retained_intron ENSMUSG00000090083 Rnf8 ENSMUST00000162417 - NO_TRANSLATION retained_intron ENSMUSG00000090083 Rnf8 ENSMUST00000234816 - NO_TRANSLATION retained_intron ENSMUSG00000090083 Rnf8 ENSMUST00000172485 ENSMUSP00000134697 TRANSLATION nonsense_mediated_decay - - 5 98.0 0.0 1.8 0.0 22.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000043939 A530064D06Rik ENSMUST00000233384 - NO_TRANSLATION retained_intron ENSMUSG00000043939 A530064D06Rik ENSMUST00000233815 - NO_TRANSLATION retained_intron ENSMUSG00000043939 A530064D06Rik ENSMUST00000232817 ENSMUSP00000156488 TRANSLATION nonsense_mediated_decay - CCDS50138.1 - 160.0 0.0 1.2 0.0 56.5 0.0 4,-1 1.0 - -2.0 MINOR ENSMUSG00000043939 A530064D06Rik ENSMUST00000027764 ENSMUSP00000027764 TRANSLATION protein_coding - CCDS50138.1 1 160.0 0.0 1.2 0.0 56.5 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000043939 A530064D06Rik ENSMUST00000053612 ENSMUSP00000055935 TRANSLATION protein_coding - CCDS28859.1 1 229.0 0.0 1.0 0.0 56.5 0.0 4,-1 0.2181 - 6.998 ALTERNATIVE:2 ENSMUSG00000024391 Apom ENSMUST00000025249 ENSMUSP00000025249 TRANSLATION protein_coding - CCDS28687.1 1 190.0 0.0 4.305 9.6 317.4 0.0 0,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000090231 Cfb ENSMUST00000133127 ENSMUSP00000118360 TRANSLATION nonsense_mediated_decay start - 5 81.0 0.0 1.66 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000090231 Cfb ENSMUST00000176332 ENSMUSP00000135304 TRANSLATION protein_coding start - 5 296.0 1.0 7.83 0.0 126.1 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000090231 Cfb ENSMUST00000128767 ENSMUSP00000119977 TRANSLATION protein_coding - - 1 761.0 2.0 16.56 0.1 359.9 0.0 4,-1 0.875 20 10.0 ALTERNATIVE:2 ENSMUSG00000090231 Cfb ENSMUST00000154526 ENSMUSP00000120990 TRANSLATION protein_coding - - 1 711.0 2.0 14.1425 0.0 301.2 0.0 4,-1 0.0146 13 4.878 MINOR ENSMUSG00000090231 Cfb ENSMUST00000176203 ENSMUSP00000135660 TRANSLATION protein_coding - CCDS50079.1 1 713.0 2.0 14.1425 0.0 301.2 0.0 4,-1 0.0908 13 4.878 MINOR ENSMUSG00000090231 Cfb ENSMUST00000153400 ENSMUSP00000116497 TRANSLATION protein_coding start - 5 234.0 2.0 5.3325 0.0 93.4 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000090231 Cfb ENSMUST00000025229 ENSMUSP00000025229 TRANSLATION protein_coding - CCDS28663.2 1 763.0 2.0 16.56 0.1 359.9 0.0 4,-1 0.8862 20 10.0 PRINCIPAL:4 ENSMUSG00000090231 Cfb ENSMUST00000141295 ENSMUSP00000118945 TRANSLATION protein_coding start - 5 259.0 2.0 6.68 0.0 108.6 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000040852 Plekhh2 ENSMUST00000235090 - NO_TRANSLATION retained_intron ENSMUSG00000040852 Plekhh2 ENSMUST00000234573 - NO_TRANSLATION retained_intron ENSMUSG00000040852 Plekhh2 ENSMUST00000047206 ENSMUSP00000039628 TRANSLATION protein_coding - CCDS28999.1 1 1491.0 0.0 4.767 10.3 230.6 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000015659 Serac1 ENSMUST00000144284 - NO_TRANSLATION retained_intron ENSMUSG00000015659 Serac1 ENSMUST00000153325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015659 Serac1 ENSMUST00000024570 ENSMUSP00000024570 TRANSLATION protein_coding - CCDS28366.1 1 624.0 4.0 0.0 0.0 0.0 2.0 -4,-1 0.1914 8 4.0 MINOR ENSMUSG00000015659 Serac1 ENSMUST00000097432 ENSMUSP00000095043 TRANSLATION protein_coding - CCDS49933.1 1 654.0 4.0 0.0 20.5 0.0 2.0 -4,-1 1.0 8 8.0 PRINCIPAL:1 ENSMUSG00000015659 Serac1 ENSMUST00000139542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042419 Nfkbil1 ENSMUST00000176748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042419 Nfkbil1 ENSMUST00000048994 ENSMUSP00000035452 TRANSLATION protein_coding - CCDS28693.1 1 381.0 0.0 0.44 9.0 23.6 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000061607 Mdc1 ENSMUST00000082337 ENSMUSP00000080949 TRANSLATION protein_coding - CCDS37604.1 5 1708.0 0.0 6.4 0.0 74.9 0.0 -4,-5 1.0 25 12.0 PRINCIPAL:1 ENSMUSG00000061607 Mdc1 ENSMUST00000174124 ENSMUSP00000133568 TRANSLATION protein_coding stop - 2 109.0 0.0 1.6 0.0 42.4 0.0 -4,-5 0.0012 3 -2.0 MINOR ENSMUSG00000061607 Mdc1 ENSMUST00000225192 ENSMUSP00000153197 TRANSLATION protein_coding start/stop - - 216.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000024084 Qpct ENSMUST00000233899 - NO_TRANSLATION retained_intron ENSMUSG00000024084 Qpct ENSMUST00000233916 ENSMUSP00000156493 TRANSLATION protein_coding - - - 313.0 10.0 5.0 0.1 164.6 0.0 0,-3 0.0615 4 16.002 MINOR ENSMUSG00000024084 Qpct ENSMUST00000040789 ENSMUSP00000038732 TRANSLATION protein_coding - CCDS28983.1 1 362.0 10.0 6.0 10.2 164.6 0.0 -1,-3 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000101307 Gm7356 ENSMUST00000189454 ENSMUSP00000156868 TRANSLATION protein_coding - - - 508.0 18.0 0.5 0.1 231.1 0.0 -4,-5 0.8188 - 18.0 PRINCIPAL:1 ENSMUSG00000016283 H2-M2 ENSMUST00000016427 ENSMUSP00000016427 TRANSLATION protein_coding - - 1 304.0 0.0 3.0 0.0 303.8 0.0 3,-2 0.1054 - 10.002 MINOR ENSMUSG00000016283 H2-M2 ENSMUST00000171139 ENSMUSP00000131297 TRANSLATION protein_coding - CCDS84312.1 1 343.0 0.0 4.0 0.0 303.8 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025431 Crisp1 ENSMUST00000026498 ENSMUSP00000026498 TRANSLATION protein_coding - CCDS28784.1 1 244.0 2.0 6.0 3.5 139.6 0.0 4,-1 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000044375 Pcare ENSMUST00000057405 ENSMUSP00000051871 TRANSLATION protein_coding - CCDS28962.1 1 1279.0 0.0 0.0 0.0 1906.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062691 Cebpzos ENSMUST00000192288 ENSMUSP00000141923 TRANSLATION protein_coding - CCDS50183.1 3 80.0 0.0 2.25 8.8 0.0 1.0 -4,-7 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000062691 Cebpzos ENSMUST00000249133 ENSMUSP00000159589 TRANSLATION protein_coding - CCDS50183.1 - 80.0 0.0 2.25 8.8 0.0 1.0 -4,-7 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000062691 Cebpzos ENSMUST00000180077 ENSMUSP00000136411 TRANSLATION protein_coding - CCDS50183.1 1 80.0 0.0 2.25 8.8 0.0 1.0 -4,-7 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000062691 Cebpzos ENSMUST00000063817 ENSMUSP00000068772 TRANSLATION protein_coding - CCDS50183.1 2 80.0 0.0 2.25 8.8 0.0 1.0 -4,-7 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000015127 Unkl ENSMUST00000015271 ENSMUSP00000015271 TRANSLATION protein_coding - CCDS28510.1 1 239.0 8.0 0.5 0.1 33.4 0.0 -4,-5 0.0255 1 3.486 MINOR ENSMUSG00000015127 Unkl ENSMUST00000039734 ENSMUSP00000039670 TRANSLATION protein_coding - CCDS57058.1 5 727.0 31.0 5.9 5.9 57.5 0.0 -4,-6 1.0 9 19.96 PRINCIPAL:1 ENSMUSG00000015127 Unkl ENSMUST00000162838 - NO_TRANSLATION retained_intron ENSMUSG00000015127 Unkl ENSMUST00000160785 ENSMUSP00000124121 TRANSLATION nonsense_mediated_decay start - 3 134.0 11.0 2.0 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000015127 Unkl ENSMUST00000160896 ENSMUSP00000124276 TRANSLATION protein_coding - CCDS70769.1 1 541.0 20.0 3.5 6.0 57.5 0.0 -4,-5 0.6732 7 9.2 MINOR ENSMUSG00000015127 Unkl ENSMUST00000162498 ENSMUSP00000124530 TRANSLATION protein_coding stop - 3 108.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000015127 Unkl ENSMUST00000161679 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073375 Lrrc30 ENSMUST00000097290 ENSMUSP00000094893 TRANSLATION protein_coding - CCDS28949.1 - 300.0 0.0 1.0 14.5 36.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000032915 Adgre4 ENSMUST00000025004 ENSMUSP00000025004 TRANSLATION protein_coding - CCDS50148.1 1 689.0 5.0 4.83 0.1 268.2 0.0 -1,-4 1.0 4 17.0 PRINCIPAL:1 ENSMUSG00000073413 Ly6g6d ENSMUST00000173120 - NO_TRANSLATION retained_intron ENSMUSG00000073413 Ly6g6d ENSMUST00000172639 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073413 Ly6g6d ENSMUST00000172903 - NO_TRANSLATION retained_intron ENSMUSG00000073413 Ly6g6d ENSMUST00000007259 ENSMUSP00000007259 TRANSLATION protein_coding - CCDS28678.1 1 135.0 0.0 0.0 5.0 0.0 0.0 3,-2 1.0 2 2.0 PRINCIPAL:1 ENSMUSG00000073413 Ly6g6d ENSMUST00000172745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039218 Srrm2 ENSMUST00000233636 ENSMUSP00000156661 TRANSLATION protein_coding stop - - 191.0 0.0 1.65 0.0 44.0 0.0 -4,-6 0.0735 5 -2.0 MINOR ENSMUSG00000039218 Srrm2 ENSMUST00000190686 ENSMUSP00000139842 TRANSLATION protein_coding - - 5 2703.0 0.0 1.65 0.0 44.0 0.0 -4,-6 1.0 42 12.0 PRINCIPAL:1 ENSMUSG00000039218 Srrm2 ENSMUST00000088621 ENSMUSP00000085993 TRANSLATION protein_coding - CCDS37475.1 1 2607.0 0.0 0.35 0.0 0.0 0.0 -4,-5 0.2759 40 1.272 MINOR ENSMUSG00000039218 Srrm2 ENSMUST00000189977 - NO_TRANSLATION retained_intron ENSMUSG00000039218 Srrm2 ENSMUST00000186259 ENSMUSP00000140531 TRANSLATION nonsense_mediated_decay start - 3 105.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039218 Srrm2 ENSMUST00000190568 - NO_TRANSLATION retained_intron ENSMUSG00000039218 Srrm2 ENSMUST00000186914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039218 Srrm2 ENSMUST00000186961 ENSMUSP00000140813 TRANSLATION protein_coding stop - 5 171.0 0.0 1.65 0.0 44.0 0.0 -4,-6 0.0755 5 -2.0 MINOR ENSMUSG00000039218 Srrm2 ENSMUST00000186045 ENSMUSP00000139914 TRANSLATION nonsense_mediated_decay start - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0236 - -2.0 MINOR ENSMUSG00000039218 Srrm2 ENSMUST00000180975 - NO_TRANSLATION retained_intron ENSMUSG00000039218 Srrm2 ENSMUST00000191385 ENSMUSP00000139901 TRANSLATION protein_coding stop - 2 88.0 0.0 0.35 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039218 Srrm2 ENSMUST00000190293 - NO_TRANSLATION retained_intron ENSMUSG00000023892 Zfp51 ENSMUST00000039577 ENSMUSP00000045684 TRANSLATION protein_coding - CCDS37463.1 1 781.0 79.0 0.8 0.0 507.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095687 Rnaset2a ENSMUST00000231927 ENSMUSP00000156083 TRANSLATION protein_coding - CCDS37433.1 - 259.0 6.0 4.75 1.1 204.8 1.0 1,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000095687 Rnaset2a ENSMUST00000097420 ENSMUSP00000095031 TRANSLATION protein_coding - CCDS37433.1 1 259.0 6.0 4.75 1.1 204.8 1.0 1,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000024330 Col11a2 ENSMUST00000143354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024330 Col11a2 ENSMUST00000236837 - NO_TRANSLATION retained_intron ENSMUSG00000024330 Col11a2 ENSMUST00000237490 ENSMUSP00000157723 TRANSLATION protein_coding - - - 1715.0 0.0 17.197 0.7 512.1 0.0 2,-2 0.4253 5 8.0 MINOR ENSMUSG00000024330 Col11a2 ENSMUST00000114252 ENSMUSP00000109890 TRANSLATION protein_coding - - 5 1655.0 0.0 17.197 3.0 512.0 0.0 2,-2 0.4913 5 8.588 MINOR ENSMUSG00000024330 Col11a2 ENSMUST00000137374 - NO_TRANSLATION retained_intron ENSMUSG00000024330 Col11a2 ENSMUST00000114255 ENSMUSP00000109893 TRANSLATION protein_coding - - 5 1689.0 0.0 17.197 0.0 515.1 0.0 2,-2 0.4064 5 8.0 MINOR ENSMUSG00000024330 Col11a2 ENSMUST00000235819 ENSMUSP00000157908 TRANSLATION protein_coding - - - 1710.0 0.0 17.197 1.8 512.4 0.0 2,-2 0.514 5 8.236 MINOR ENSMUSG00000024330 Col11a2 ENSMUST00000087497 ENSMUSP00000084772 TRANSLATION protein_coding - CCDS28640.1 2 1650.0 0.0 17.197 3.3 512.1 0.0 2,-2 0.7973 5 8.676 MINOR ENSMUSG00000024330 Col11a2 ENSMUST00000131134 ENSMUSP00000122082 TRANSLATION protein_coding - - 1 1736.0 0.0 17.197 7.8 511.7 0.0 2,-2 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000024330 Col11a2 ENSMUST00000173749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024330 Col11a2 ENSMUST00000144927 - NO_TRANSLATION retained_intron ENSMUSG00000024330 Col11a2 ENSMUST00000237989 ENSMUSP00000157425 TRANSLATION protein_coding - - - 1629.0 0.0 17.197 5.1 514.8 0.0 2,-2 0.7673 5 9.206 ALTERNATIVE:1 ENSMUSG00000090417 Vmn2r94 ENSMUST00000231815 ENSMUSP00000156288 TRANSLATION protein_coding - - - 469.0 0.0 1.35 0.0 124.1 0.0 -4,-7 0.0 - 3.282 MINOR ENSMUSG00000090417 Vmn2r94 ENSMUST00000172190 ENSMUSP00000126386 TRANSLATION protein_coding - CCDS49971.1 5 818.0 4.0 2.47 0.0 379.0 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000090417 Vmn2r94 ENSMUST00000231390 - NO_TRANSLATION retained_intron ENSMUSG00000090417 Vmn2r94 ENSMUST00000231457 ENSMUSP00000155968 TRANSLATION nonsense_mediated_decay - - - 41.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000048249 Crebrf ENSMUST00000176845 - NO_TRANSLATION retained_intron ENSMUSG00000048249 Crebrf ENSMUST00000132972 - NO_TRANSLATION retained_intron ENSMUSG00000048249 Crebrf ENSMUST00000144221 ENSMUSP00000120212 TRANSLATION protein_coding stop - 1 351.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0261 1 -2.0 MINOR ENSMUSG00000048249 Crebrf ENSMUST00000151681 ENSMUSP00000119186 TRANSLATION protein_coding stop - 2 137.0 0.0 1.75 0.0 0.0 0.0 -4,-2 0.0096 - -2.0 MINOR ENSMUSG00000048249 Crebrf ENSMUST00000062519 ENSMUSP00000059102 TRANSLATION protein_coding - CCDS37516.1 1 640.0 0.0 3.75 11.8 0.0 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000048249 Crebrf ENSMUST00000142539 ENSMUSP00000114274 TRANSLATION protein_coding - - 1 653.0 0.0 2.75 0.0 0.0 0.0 -4,-5 0.0639 1 4.002 MINOR ENSMUSG00000094884 Or12d15 ENSMUST00000214591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094884 Or12d15 ENSMUST00000215518 ENSMUSP00000154753 TRANSLATION protein_coding - - 5 305.0 0.0 1.25 3.8 174.4 0.0 -4,-6 0.8866 - 13.0 PRINCIPAL:1 ENSMUSG00000080316 Spaca6 ENSMUST00000178888 - NO_TRANSLATION retained_intron ENSMUSG00000080316 Spaca6 ENSMUST00000155293 - NO_TRANSLATION retained_intron ENSMUSG00000080316 Spaca6 ENSMUST00000178408 - NO_TRANSLATION retained_intron ENSMUSG00000080316 Spaca6 ENSMUST00000179350 - NO_TRANSLATION retained_intron ENSMUSG00000080316 Spaca6 ENSMUST00000052338 - NO_TRANSLATION retained_intron ENSMUSG00000080316 Spaca6 ENSMUST00000228490 ENSMUSP00000154630 TRANSLATION protein_coding stop - - 113.0 0.0 0.53 0.0 0.0 0.0 -4,-2 0.023 - -2.0 MINOR ENSMUSG00000080316 Spaca6 ENSMUST00000177859 - NO_TRANSLATION retained_intron ENSMUSG00000080316 Spaca6 ENSMUST00000012759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000080316 Spaca6 ENSMUST00000150302 ENSMUSP00000136307 TRANSLATION protein_coding stop - 5 90.0 0.0 0.33 0.0 0.0 0.0 -4,-2 0.0245 - -2.0 MINOR ENSMUSG00000080316 Spaca6 ENSMUST00000154301 ENSMUSP00000117377 TRANSLATION nonsense_mediated_decay start - 3 80.0 0.0 0.398 0.0 0.0 0.0 0,3 0.0411 - -2.0 MINOR ENSMUSG00000080316 Spaca6 ENSMUST00000133912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000080316 Spaca6 ENSMUST00000137228 - NO_TRANSLATION retained_intron ENSMUSG00000080316 Spaca6 ENSMUST00000178056 - NO_TRANSLATION retained_intron ENSMUSG00000080316 Spaca6 ENSMUST00000172097 ENSMUSP00000128732 TRANSLATION protein_coding - CCDS49967.1 5 339.0 0.0 1.208 0.0 0.0 0.0 -3,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000080316 Spaca6 ENSMUST00000226899 ENSMUSP00000154088 TRANSLATION nonsense_mediated_decay - - - 117.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0081 - -2.0 MINOR ENSMUSG00000080316 Spaca6 ENSMUST00000139969 ENSMUSP00000119658 TRANSLATION nonsense_mediated_decay start - 1 188.0 0.0 0.33 0.0 0.0 0.0 3,-2 0.0899 - -2.0 MINOR ENSMUSG00000036557 Stpg4 ENSMUST00000040609 ENSMUSP00000044250 TRANSLATION protein_coding - CCDS50206.1 1 247.0 0.0 0.0 4.5 9.2 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000036557 Stpg4 ENSMUST00000189157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036557 Stpg4 ENSMUST00000186211 ENSMUSP00000140203 TRANSLATION protein_coding - - 2 178.0 0.0 0.0 2.2 0.0 0.0 -4,-5 0.2658 - 0.686 MINOR ENSMUSG00000036557 Stpg4 ENSMUST00000189487 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036557 Stpg4 ENSMUST00000187078 ENSMUSP00000140579 TRANSLATION protein_coding - - 3 207.0 0.0 0.0 1.1 9.2 0.0 -4,-5 0.1484 - 6.058 MINOR ENSMUSG00000023972 Ptk7 ENSMUST00000232855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023972 Ptk7 ENSMUST00000044442 ENSMUSP00000043703 TRANSLATION protein_coding - CCDS37637.1 1 1062.0 18.0 8.346 0.4 575.9 0.0 4,-1 1.0 26 18.0 PRINCIPAL:1 ENSMUSG00000061336 Or14j10 ENSMUST00000072265 ENSMUSP00000072115 TRANSLATION protein_coding - CCDS28758.1 - 321.0 0.0 1.0 0.1 153.9 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000061336 Or14j10 ENSMUST00000216128 ENSMUSP00000150977 TRANSLATION protein_coding - CCDS28758.1 5 321.0 0.0 1.0 0.1 153.9 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024028 Tff2 ENSMUST00000024826 ENSMUSP00000024826 TRANSLATION protein_coding - CCDS37545.1 1 129.0 0.0 2.375 4.3 98.6 0.0 4,-1 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000024227 Pdzph1 ENSMUST00000025064 ENSMUSP00000025064 TRANSLATION protein_coding - - 1 1233.0 9.0 3.602 0.0 141.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000024227 Pdzph1 ENSMUST00000177108 - NO_TRANSLATION retained_intron ENSMUSG00000024227 Pdzph1 ENSMUST00000177360 ENSMUSP00000135180 TRANSLATION protein_coding - - 5 198.0 1.0 1.298 0.0 36.8 0.0 -4,-5 0.0 - 2.058 MINOR ENSMUSG00000023067 Cdkn1a ENSMUST00000023829 ENSMUSP00000023829 TRANSLATION protein_coding - CCDS28591.1 1 159.0 0.0 1.3 7.2 70.1 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000023067 Cdkn1a ENSMUST00000119901 ENSMUSP00000113150 TRANSLATION protein_coding - CCDS28591.1 2 159.0 0.0 1.3 7.2 70.1 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000023067 Cdkn1a ENSMUST00000233296 ENSMUSP00000156559 TRANSLATION protein_coding - CCDS28591.1 - 159.0 0.0 1.3 7.2 70.1 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000023067 Cdkn1a ENSMUST00000232979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023067 Cdkn1a ENSMUST00000122348 ENSMUSP00000112411 TRANSLATION protein_coding - CCDS28591.1 1 159.0 0.0 1.3 7.2 70.1 0.0 -4,-7 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000037577 Ephx3 ENSMUST00000087721 ENSMUSP00000085013 TRANSLATION protein_coding - CCDS28615.1 1 424.0 3.0 6.68 0.1 64.6 2.0 -4,-7 1.0 7 9.0 PRINCIPAL:2 ENSMUSG00000037577 Ephx3 ENSMUST00000162117 ENSMUSP00000124600 TRANSLATION protein_coding - CCDS84290.1 1 417.0 3.0 6.35 0.1 64.6 2.0 -4,-7 0.3484 7 8.34 ALTERNATIVE:2 ENSMUSG00000023923 Tbc1d5 ENSMUST00000223758 - NO_TRANSLATION retained_intron ENSMUSG00000023923 Tbc1d5 ENSMUST00000225473 - NO_TRANSLATION retained_intron ENSMUSG00000023923 Tbc1d5 ENSMUST00000224123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023923 Tbc1d5 ENSMUST00000224528 ENSMUSP00000153172 TRANSLATION protein_coding - - - 837.0 0.0 3.809 0.0 88.1 0.0 -4,-5 0.1459 16 6.0 ALTERNATIVE:2 ENSMUSG00000023923 Tbc1d5 ENSMUST00000024717 ENSMUSP00000024717 TRANSLATION protein_coding - CCDS37650.1 1 815.0 0.0 3.809 0.0 88.1 0.0 -4,-5 1.0 16 6.0 PRINCIPAL:2 ENSMUSG00000023923 Tbc1d5 ENSMUST00000223979 - NO_TRANSLATION retained_intron ENSMUSG00000023923 Tbc1d5 ENSMUST00000224977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023923 Tbc1d5 ENSMUST00000224547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023923 Tbc1d5 ENSMUST00000225252 - NO_TRANSLATION retained_intron ENSMUSG00000023973 Cnpy3 ENSMUST00000121671 ENSMUSP00000113350 TRANSLATION protein_coding - - 2 118.0 0.0 0.8 0.0 35.0 0.0 0,-4 0.0 1 0.0 MINOR ENSMUSG00000023973 Cnpy3 ENSMUST00000059844 ENSMUSP00000050309 TRANSLATION protein_coding - CCDS28839.1 1 276.0 0.0 4.13 4.8 163.2 0.0 0,-4 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000023973 Cnpy3 ENSMUST00000145877 - NO_TRANSLATION retained_intron ENSMUSG00000023973 Cnpy3 ENSMUST00000129200 ENSMUSP00000120790 TRANSLATION nonsense_mediated_decay - - 1 56.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000023973 Cnpy3 ENSMUST00000148656 - NO_TRANSLATION retained_intron ENSMUSG00000037196 Pacrg ENSMUST00000041463 ENSMUSP00000044376 TRANSLATION protein_coding - CCDS28388.1 1 241.0 0.0 3.2 0.0 279.5 0.0 -4,-1 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000037196 Pacrg ENSMUST00000160599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062252 Lhfpl5 ENSMUST00000232974 ENSMUSP00000156557 TRANSLATION protein_coding - CCDS37530.1 - 219.0 0.0 2.0 35.8 216.2 4.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000062252 Lhfpl5 ENSMUST00000232862 ENSMUSP00000156959 TRANSLATION protein_coding - CCDS37530.1 - 219.0 0.0 2.0 35.8 216.2 4.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000062252 Lhfpl5 ENSMUST00000080780 ENSMUSP00000079598 TRANSLATION protein_coding - CCDS37530.1 1 219.0 0.0 2.0 35.8 216.2 4.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040048 Ndufb10 ENSMUST00000147648 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040048 Ndufb10 ENSMUST00000141324 - NO_TRANSLATION retained_intron ENSMUSG00000040048 Ndufb10 ENSMUST00000045602 ENSMUSP00000043543 TRANSLATION protein_coding - CCDS28494.1 1 176.0 0.0 4.33 7.2 162.3 0.0 -4,-5 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000040048 Ndufb10 ENSMUST00000135708 ENSMUSP00000120091 TRANSLATION protein_coding stop - 2 149.0 0.0 3.2 0.0 109.4 0.0 -4,-5 0.0001 8 -2.0 MINOR ENSMUSG00000040048 Ndufb10 ENSMUST00000129451 - NO_TRANSLATION retained_intron ENSMUSG00000040048 Ndufb10 ENSMUST00000144285 - NO_TRANSLATION retained_intron ENSMUSG00000024338 Psmb8 ENSMUST00000236557 - NO_TRANSLATION retained_intron ENSMUSG00000024338 Psmb8 ENSMUST00000172960 - NO_TRANSLATION retained_intron ENSMUSG00000024338 Psmb8 ENSMUST00000238071 - NO_TRANSLATION retained_intron ENSMUSG00000024338 Psmb8 ENSMUST00000173441 ENSMUSP00000134664 TRANSLATION protein_coding stop - 5 256.0 0.0 4.13 0.0 163.4 0.0 -4,-5 0.0021 11 -2.0 MINOR ENSMUSG00000024338 Psmb8 ENSMUST00000025196 ENSMUSP00000025196 TRANSLATION protein_coding - CCDS50073.1 1 276.0 0.0 4.96 10.2 163.4 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000024338 Psmb8 ENSMUST00000237106 - NO_TRANSLATION retained_intron ENSMUSG00000024338 Psmb8 ENSMUST00000236331 ENSMUSP00000158017 TRANSLATION protein_coding start - - 93.0 0.0 2.33 0.0 60.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000075705 Msrb1 ENSMUST00000101800 ENSMUSP00000099300 TRANSLATION protein_coding - CCDS28495.1 1 116.0 6.0 2.83 17.7 83.5 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000075705 Msrb1 ENSMUST00000115262 ENSMUSP00000110917 TRANSLATION protein_coding - CCDS28495.1 1 116.0 6.0 2.83 17.7 83.5 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000035868 Zfp983 ENSMUST00000039726 ENSMUSP00000039392 TRANSLATION protein_coding - CCDS49994.1 1 460.0 40.0 1.0 0.0 308.8 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000035868 Zfp983 ENSMUST00000232827 ENSMUSP00000156443 TRANSLATION protein_coding - CCDS49994.1 - 460.0 40.0 1.0 0.0 308.8 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000116953 Ermardl2 ENSMUST00000232182 - NO_TRANSLATION retained_intron ENSMUSG00000116953 Ermardl2 ENSMUST00000231723 - NO_TRANSLATION retained_intron ENSMUSG00000116953 Ermardl2 ENSMUST00000231253 - NO_TRANSLATION retained_intron ENSMUSG00000116953 Ermardl2 ENSMUST00000061688 ENSMUSP00000060857 TRANSLATION protein_coding - CCDS49960.1 1 438.0 0.0 0.0 0.0 83.6 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000050824 Sstr5 ENSMUST00000165183 ENSMUSP00000128787 TRANSLATION protein_coding - CCDS28520.1 1 362.0 0.0 0.8 10.1 209.9 7.0 -,- 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050824 Sstr5 ENSMUST00000249774 ENSMUSP00000159928 TRANSLATION protein_coding - CCDS28520.1 - 362.0 0.0 0.8 10.1 209.9 7.0 -,- 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050824 Sstr5 ENSMUST00000249775 ENSMUSP00000159929 TRANSLATION protein_coding - CCDS28520.1 - 362.0 0.0 0.8 10.1 209.9 7.0 -,- 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050824 Sstr5 ENSMUST00000249772 ENSMUSP00000159926 TRANSLATION protein_coding - - - 385.0 0.0 0.8 0.0 209.9 7.0 -,- 0.0831 - 12.0 MINOR ENSMUSG00000050824 Sstr5 ENSMUST00000051864 ENSMUSP00000051085 TRANSLATION protein_coding - CCDS28520.1 1 362.0 0.0 0.8 10.1 209.9 7.0 -,- 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050824 Sstr5 ENSMUST00000249773 ENSMUSP00000159927 TRANSLATION protein_coding - CCDS28520.1 - 362.0 0.0 0.8 10.1 209.9 7.0 -,- 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053835 H2-T24 ENSMUST00000113760 ENSMUSP00000109389 TRANSLATION protein_coding - CCDS37607.1 2 363.0 0.0 3.08 0.0 214.5 0.0 -1,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000053835 H2-T24 ENSMUST00000174063 ENSMUSP00000133476 TRANSLATION protein_coding - - 3 128.0 0.0 1.0 0.0 78.3 0.0 -1,-5 0.0 1 1.842 MINOR ENSMUSG00000032855 Pkd1 ENSMUST00000035565 ENSMUSP00000049296 TRANSLATION protein_coding - CCDS28485.1 1 4293.0 0.0 13.11 0.0 1688.8 3.0 4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000032855 Pkd1 ENSMUST00000228550 ENSMUSP00000154062 TRANSLATION protein_coding - - - 72.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0065 - 0.0 MINOR ENSMUSG00000032855 Pkd1 ENSMUST00000228581 ENSMUSP00000154141 TRANSLATION nonsense_mediated_decay start - - 27.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0278 - -2.0 MINOR ENSMUSG00000032855 Pkd1 ENSMUST00000227836 ENSMUSP00000154626 TRANSLATION protein_coding start/stop - - 234.0 0.0 1.53 0.0 0.0 2.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000032855 Pkd1 ENSMUST00000228745 ENSMUSP00000153873 TRANSLATION protein_coding start/stop - - 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000032855 Pkd1 ENSMUST00000227107 ENSMUSP00000154792 TRANSLATION nonsense_mediated_decay start - - 1231.0 0.0 2.53 0.0 273.7 3.0 -4,-6 0.0141 1 -2.0 MINOR ENSMUSG00000032855 Pkd1 ENSMUST00000227058 ENSMUSP00000153867 TRANSLATION protein_coding start/stop - - 237.0 0.0 2.94 0.0 87.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000032855 Pkd1 ENSMUST00000226178 - NO_TRANSLATION retained_intron ENSMUSG00000032855 Pkd1 ENSMUST00000226883 ENSMUSP00000154668 TRANSLATION nonsense_mediated_decay start - - 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0278 - -2.0 MINOR ENSMUSG00000032855 Pkd1 ENSMUST00000228750 - NO_TRANSLATION retained_intron ENSMUSG00000024448 H2-M10.1 ENSMUST00000172576 ENSMUSP00000133408 TRANSLATION protein_coding start - 1 287.0 0.0 4.0 0.0 200.9 1.0 3,-1 0.0025 - -2.0 MINOR ENSMUSG00000024448 H2-M10.1 ENSMUST00000025322 ENSMUSP00000025322 TRANSLATION protein_coding - CCDS28721.1 1 331.0 0.0 5.0 0.0 237.3 1.0 2,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040658 Dnph1 ENSMUST00000046497 ENSMUSP00000045283 TRANSLATION protein_coding - CCDS28830.1 1 173.0 18.0 3.75 0.0 68.4 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000024327 Slc39a7 ENSMUST00000025186 ENSMUSP00000025186 TRANSLATION protein_coding - CCDS37576.1 1 476.0 0.0 0.998 4.2 272.3 4.0 1,-3 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000024327 Slc39a7 ENSMUST00000170491 - NO_TRANSLATION retained_intron ENSMUSG00000024327 Slc39a7 ENSMUST00000173810 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024327 Slc39a7 ENSMUST00000171872 ENSMUSP00000133146 TRANSLATION protein_coding stop - 5 161.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0041 - -2.0 MINOR ENSMUSG00000024327 Slc39a7 ENSMUST00000167145 - NO_TRANSLATION retained_intron ENSMUSG00000024327 Slc39a7 ENSMUST00000169397 ENSMUSP00000130102 TRANSLATION protein_coding - CCDS37576.1 5 476.0 0.0 0.998 4.2 272.3 4.0 1,-3 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000045036 Tmem232 ENSMUST00000233493 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045036 Tmem232 ENSMUST00000233279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045036 Tmem232 ENSMUST00000233117 ENSMUSP00000156833 TRANSLATION protein_coding - - - 674.0 0.0 0.0 0.3 759.2 1.0 -4,-6 0.5603 - 2.0 ALTERNATIVE:2 ENSMUSG00000045036 Tmem232 ENSMUST00000062161 ENSMUSP00000055652 TRANSLATION protein_coding - CCDS28940.1 1 675.0 0.0 0.0 0.3 769.2 1.0 -4,-6 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000045036 Tmem232 ENSMUST00000233738 ENSMUSP00000156513 TRANSLATION protein_coding - - - 641.0 0.0 0.0 0.0 768.4 1.0 -4,-5 0.1673 - 2.0 ALTERNATIVE:2 ENSMUSG00000045036 Tmem232 ENSMUST00000086722 ENSMUSP00000083927 TRANSLATION protein_coding - CCDS28940.1 1 675.0 0.0 0.0 0.3 769.2 1.0 -4,-6 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000045036 Tmem232 ENSMUST00000233328 ENSMUSP00000156859 TRANSLATION protein_coding - - - 559.0 0.0 0.0 0.0 615.4 1.0 -4,-6 0.0135 - 0.0 MINOR ENSMUSG00000024188 Luc7l ENSMUST00000025023 ENSMUSP00000025023 TRANSLATION protein_coding - CCDS28550.1 1 325.0 5.0 4.697 5.0 277.1 0.0 -4,-6 0.6537 3 18.365 MINOR ENSMUSG00000024188 Luc7l ENSMUST00000140427 ENSMUSP00000122258 TRANSLATION protein_coding stop - 5 172.0 5.0 4.25 0.0 161.6 0.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000024188 Luc7l ENSMUST00000119928 ENSMUSP00000113405 TRANSLATION protein_coding - CCDS28550.1 5 325.0 5.0 4.697 5.0 277.1 0.0 -4,-6 0.6537 3 18.365 MINOR ENSMUSG00000024188 Luc7l ENSMUST00000114976 ENSMUSP00000110627 TRANSLATION protein_coding - CCDS28549.1 1 371.0 5.0 4.697 9.8 277.1 0.0 -4,-6 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000024188 Luc7l ENSMUST00000148894 ENSMUSP00000115213 TRANSLATION nonsense_mediated_decay - - 1 79.0 0.0 0.09 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024188 Luc7l ENSMUST00000152107 ENSMUSP00000119717 TRANSLATION protein_coding start - 5 170.0 0.0 1.882 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024188 Luc7l ENSMUST00000155151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024188 Luc7l ENSMUST00000154235 - NO_TRANSLATION retained_intron ENSMUSG00000024188 Luc7l ENSMUST00000133032 - NO_TRANSLATION retained_intron ENSMUSG00000057801 Or2n1c ENSMUST00000076245 ENSMUSP00000075595 TRANSLATION protein_coding - CCDS28778.1 - 312.0 0.0 1.0 8.9 168.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057801 Or2n1c ENSMUST00000213217 ENSMUSP00000150535 TRANSLATION protein_coding - CCDS28778.1 5 312.0 0.0 1.0 8.9 168.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059687 Or1o11 ENSMUST00000218675 ENSMUSP00000151360 TRANSLATION protein_coding - CCDS28751.1 - 320.0 0.0 0.8 0.9 181.3 8.0 -4,-7 0.731 - 8.0 ALTERNATIVE:2 ENSMUSG00000059687 Or1o11 ENSMUST00000078207 ENSMUSP00000077337 TRANSLATION protein_coding - - - 309.0 0.0 0.8 2.2 181.3 8.0 -4,-6 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000039601 Rcan2 ENSMUST00000228972 ENSMUSP00000154835 TRANSLATION protein_coding stop - - 228.0 0.0 3.25 0.0 200.3 0.0 -4,-5 0.0036 1 -2.0 MINOR ENSMUSG00000039601 Rcan2 ENSMUST00000229939 ENSMUSP00000155543 TRANSLATION protein_coding - - - 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000039601 Rcan2 ENSMUST00000044792 ENSMUSP00000048013 TRANSLATION protein_coding - CCDS28801.1 1 197.0 0.0 3.5 28.0 217.3 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000039601 Rcan2 ENSMUST00000044895 ENSMUSP00000039473 TRANSLATION protein_coding - CCDS28800.1 1 243.0 0.0 3.25 22.8 213.8 0.0 -4,-5 0.8975 1 14.52 MINOR ENSMUSG00000039601 Rcan2 ENSMUST00000229744 ENSMUSP00000155082 TRANSLATION protein_coding - CCDS28800.1 - 243.0 0.0 3.25 22.8 213.8 0.0 -4,-5 0.8975 1 14.52 MINOR ENSMUSG00000039601 Rcan2 ENSMUST00000177857 ENSMUSP00000137211 TRANSLATION protein_coding - CCDS28801.1 1 197.0 0.0 3.5 28.0 217.3 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000039601 Rcan2 ENSMUST00000229240 ENSMUSP00000155555 TRANSLATION protein_coding stop - - 128.0 0.0 2.25 0.0 141.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000096345 Esp16 ENSMUST00000178037 ENSMUSP00000136148 TRANSLATION protein_coding - CCDS57089.1 1 85.0 0.0 0.0 0.0 82.9 0.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000077450 Rab11b ENSMUST00000173860 ENSMUSP00000134448 TRANSLATION protein_coding - - 1 193.0 15.0 4.63 0.0 171.2 0.0 -4,-5 0.0005 3 7.95 MINOR ENSMUSG00000077450 Rab11b ENSMUST00000173987 ENSMUSP00000133921 TRANSLATION nonsense_mediated_decay - - 3 149.0 20.0 3.5 0.0 180.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000077450 Rab11b ENSMUST00000174744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000077450 Rab11b ENSMUST00000172894 ENSMUSP00000134544 TRANSLATION protein_coding start - 5 125.0 13.0 3.028 0.0 146.9 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000077450 Rab11b ENSMUST00000057373 ENSMUSP00000110021 TRANSLATION protein_coding - CCDS28628.1 1 218.0 25.0 5.38 36.9 213.7 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000077450 Rab11b ENSMUST00000235046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044957 Pp2d1 ENSMUST00000056198 ENSMUSP00000056682 TRANSLATION protein_coding - CCDS37653.1 1 620.0 3.0 0.16 0.1 75.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056600 Or2h2 ENSMUST00000070808 ENSMUSP00000065322 TRANSLATION protein_coding - CCDS28735.1 - 310.0 0.0 2.0 7.5 175.4 8.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000056600 Or2h2 ENSMUST00000207101 ENSMUSP00000146397 TRANSLATION protein_coding stop - 3 156.0 0.0 1.0 0.0 82.9 5.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000056600 Or2h2 ENSMUST00000216488 ENSMUSP00000149544 TRANSLATION protein_coding - CCDS28735.1 5 310.0 0.0 2.0 7.5 175.4 8.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000056600 Or2h2 ENSMUST00000215502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056600 Or2h2 ENSMUST00000215195 ENSMUSP00000150769 TRANSLATION protein_coding - CCDS28735.1 5 310.0 0.0 2.0 7.5 175.4 8.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000056600 Or2h2 ENSMUST00000217397 ENSMUSP00000150119 TRANSLATION protein_coding - CCDS28735.1 5 310.0 0.0 2.0 7.5 175.4 8.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000069135 Cep43 ENSMUST00000097419 ENSMUSP00000095030 TRANSLATION protein_coding - CCDS57045.1 1 399.0 0.0 3.75 6.2 99.3 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:4 ENSMUSG00000069135 Cep43 ENSMUST00000161898 ENSMUSP00000123855 TRANSLATION protein_coding start - 3 151.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000069135 Cep43 ENSMUST00000024636 ENSMUSP00000024636 TRANSLATION protein_coding - CCDS28380.1 1 379.0 0.0 3.75 5.3 99.3 0.0 -4,-5 0.9199 7 9.654 ALTERNATIVE:1 ENSMUSG00000069135 Cep43 ENSMUST00000162586 - NO_TRANSLATION retained_intron ENSMUSG00000038002 Cramp1 ENSMUST00000073337 ENSMUSP00000073060 TRANSLATION protein_coding - CCDS50030.1 1 1285.0 0.0 0.0 0.4 0.0 0.0 -4,-5 1.0 8 0.0 PRINCIPAL:1 ENSMUSG00000038002 Cramp1 ENSMUST00000233169 ENSMUSP00000156431 TRANSLATION protein_coding stop - - 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0199 1 -2.0 MINOR ENSMUSG00000038002 Cramp1 ENSMUST00000233774 ENSMUSP00000156906 TRANSLATION protein_coding - CCDS50030.1 - 1285.0 0.0 0.0 0.4 0.0 0.0 -4,-5 1.0 8 0.0 PRINCIPAL:1 ENSMUSG00000110218 Tincr ENSMUST00000209718 ENSMUSP00000147618 TRANSLATION protein_coding - - 5 87.0 0.0 1.0 5.1 25.5 0.0 -4,-7 0.8614 - 14.0 PRINCIPAL:1 ENSMUSG00000110218 Tincr ENSMUST00000249631 ENSMUSP00000159834 TRANSLATION protein_coding - - - 87.0 0.0 1.0 5.1 25.5 0.0 -4,-7 0.8614 - 14.0 PRINCIPAL:1 ENSMUSG00000045817 Zfp36l2 ENSMUST00000060366 ENSMUSP00000050820 TRANSLATION protein_coding - CCDS28998.1 1 484.0 8.0 0.0 0.0 218.2 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000037326 Capn15 ENSMUST00000212789 ENSMUSP00000148393 TRANSLATION nonsense_mediated_decay - - 1 955.0 19.0 2.86 0.0 371.0 0.0 -4,-6 0.1465 9 -2.0 MINOR ENSMUSG00000037326 Capn15 ENSMUST00000212520 ENSMUSP00000148486 TRANSLATION protein_coding - CCDS84286.1 1 1196.0 19.0 2.86 0.1 371.0 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:2 ENSMUSG00000037326 Capn15 ENSMUST00000212735 - NO_TRANSLATION retained_intron ENSMUSG00000037326 Capn15 ENSMUST00000041641 ENSMUSP00000039528 TRANSLATION protein_coding - CCDS28540.1 5 1095.0 19.0 2.86 0.0 371.0 0.0 -4,-6 0.4444 11 14.0 ALTERNATIVE:2 ENSMUSG00000037326 Capn15 ENSMUST00000212702 - NO_TRANSLATION retained_intron ENSMUSG00000037326 Capn15 ENSMUST00000211917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037326 Capn15 ENSMUST00000212099 ENSMUSP00000148385 TRANSLATION nonsense_mediated_decay - - 1 502.0 19.0 0.0 0.0 94.4 0.0 -4,-6 0.0096 4 -2.0 MINOR ENSMUSG00000037326 Capn15 ENSMUST00000212149 ENSMUSP00000148718 TRANSLATION protein_coding - CCDS28540.1 5 1095.0 19.0 2.86 0.0 371.0 0.0 -4,-6 0.4444 11 14.0 ALTERNATIVE:2 ENSMUSG00000048826 Dact2 ENSMUST00000232816 ENSMUSP00000156781 TRANSLATION protein_coding stop - - 150.0 0.0 0.0 0.0 214.6 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000048826 Dact2 ENSMUST00000053218 ENSMUSP00000051638 TRANSLATION protein_coding - CCDS28406.1 1 757.0 0.0 0.0 0.0 761.0 0.0 -4,0 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000023802 Nox3 ENSMUST00000115800 ENSMUSP00000111466 TRANSLATION protein_coding - CCDS28364.2 1 568.0 0.0 11.15 15.8 86.0 0.0 0,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000071042 Rasgrp3 ENSMUST00000095204 ENSMUSP00000092828 TRANSLATION protein_coding - CCDS37695.1 1 691.0 8.0 10.88 14.0 234.8 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000071042 Rasgrp3 ENSMUST00000164192 ENSMUSP00000129393 TRANSLATION protein_coding - CCDS37695.1 1 691.0 8.0 10.88 14.0 234.8 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000071042 Rasgrp3 ENSMUST00000234011 ENSMUSP00000156978 TRANSLATION protein_coding stop - - 69.0 0.0 1.666 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000071042 Rasgrp3 ENSMUST00000235103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071042 Rasgrp3 ENSMUST00000234640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071042 Rasgrp3 ENSMUST00000234644 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071042 Rasgrp3 ENSMUST00000234660 ENSMUSP00000157183 TRANSLATION protein_coding stop - - 56.0 0.0 1.6 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000056492 Adgrf5 ENSMUST00000224278 ENSMUSP00000152923 TRANSLATION protein_coding stop - - 149.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0014 - -2.0 MINOR ENSMUSG00000056492 Adgrf5 ENSMUST00000225004 ENSMUSP00000153304 TRANSLATION nonsense_mediated_decay start - - 142.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000056492 Adgrf5 ENSMUST00000113599 ENSMUSP00000109229 TRANSLATION protein_coding - CCDS37622.1 5 1348.0 0.0 1.15 0.4 290.7 7.0 3,-2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000056492 Adgrf5 ENSMUST00000225466 ENSMUSP00000153704 TRANSLATION protein_coding stop - - 82.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0014 - -2.0 MINOR ENSMUSG00000056492 Adgrf5 ENSMUST00000225962 ENSMUSP00000153373 TRANSLATION protein_coding start - - 1143.0 0.0 1.15 0.0 251.8 7.0 -4,-5 0.156 9 -2.0 MINOR ENSMUSG00000056492 Adgrf5 ENSMUST00000226087 ENSMUSP00000153049 TRANSLATION protein_coding - CCDS37622.1 - 1348.0 0.0 1.15 0.4 290.7 7.0 3,-2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000038141 Tmem181a ENSMUST00000088940 ENSMUSP00000086333 TRANSLATION protein_coding - CCDS37425.1 1 474.0 0.0 0.699 15.1 326.0 8.0 -2,-5 1.0 3 9.316 PRINCIPAL:3 ENSMUSG00000038141 Tmem181a ENSMUST00000228334 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038141 Tmem181a ENSMUST00000231593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038141 Tmem181a ENSMUST00000232383 ENSMUSP00000156382 TRANSLATION protein_coding - - - 515.0 0.0 0.699 18.0 326.0 8.0 -4,-7 0.9255 2 10.0 ALTERNATIVE:1 ENSMUSG00000073412 Lst1 ENSMUST00000097336 ENSMUSP00000094949 TRANSLATION protein_coding - CCDS50085.1 1 93.0 0.0 0.83 0.0 122.9 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024096 Ralbp1 ENSMUST00000233784 ENSMUSP00000156615 TRANSLATION protein_coding stop - - 81.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024096 Ralbp1 ENSMUST00000024905 ENSMUSP00000024905 TRANSLATION protein_coding - CCDS37678.1 1 648.0 0.0 4.55 5.8 150.0 0.0 -4,-6 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000024096 Ralbp1 ENSMUST00000232885 ENSMUSP00000156891 TRANSLATION protein_coding stop - - 81.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024096 Ralbp1 ENSMUST00000166543 ENSMUSP00000129448 TRANSLATION protein_coding - CCDS37678.1 1 648.0 0.0 4.55 5.8 150.0 0.0 -4,-6 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000024096 Ralbp1 ENSMUST00000232848 ENSMUSP00000156749 TRANSLATION protein_coding start - - 224.0 0.0 0.95 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000024096 Ralbp1 ENSMUST00000233399 ENSMUSP00000156396 TRANSLATION protein_coding stop - - 95.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024096 Ralbp1 ENSMUST00000233054 ENSMUSP00000156660 TRANSLATION protein_coding - - - 594.0 0.0 2.8 0.0 149.6 0.0 -4,-6 0.0127 8 8.478 MINOR ENSMUSG00000050102 Vmn1r235 ENSMUST00000235270 ENSMUSP00000157741 TRANSLATION protein_coding - - - 349.0 0.0 0.0 0.0 64.4 11.0 -4,-1 0.1161 - 2.0 ALTERNATIVE:2 ENSMUSG00000050102 Vmn1r235 ENSMUST00000060603 ENSMUSP00000061689 TRANSLATION protein_coding - CCDS37461.1 1 328.0 0.0 0.0 0.1 64.4 11.0 -4,-7 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000050102 Vmn1r235 ENSMUST00000236821 ENSMUSP00000158023 TRANSLATION protein_coding - CCDS37461.1 - 328.0 0.0 0.0 0.1 64.4 11.0 -4,-7 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000050102 Vmn1r235 ENSMUST00000237810 ENSMUSP00000157418 TRANSLATION protein_coding - - - 307.0 0.0 0.0 0.0 64.4 11.0 1,-3 0.1651 - 2.0 ALTERNATIVE:2 ENSMUSG00000050102 Vmn1r235 ENSMUST00000236212 ENSMUSP00000158083 TRANSLATION protein_coding - CCDS37461.1 - 328.0 0.0 0.0 0.1 64.4 11.0 -4,-7 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000050102 Vmn1r235 ENSMUST00000237540 ENSMUSP00000157642 TRANSLATION protein_coding - - - 307.0 0.0 0.0 0.0 64.4 11.0 1,-3 0.1651 - 2.0 ALTERNATIVE:2 ENSMUSG00000050102 Vmn1r235 ENSMUST00000236183 ENSMUSP00000157784 TRANSLATION protein_coding - - - 307.0 0.0 0.0 0.0 64.4 11.0 1,-3 0.1651 - 2.0 ALTERNATIVE:2 ENSMUSG00000023832 Acat2 ENSMUST00000007005 ENSMUSP00000007005 TRANSLATION protein_coding - CCDS37437.1 1 397.0 19.0 9.0 19.8 490.6 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000023832 Acat2 ENSMUST00000159697 ENSMUSP00000125066 TRANSLATION protein_coding - - 1 365.0 19.0 8.0 0.0 456.1 0.0 -4,-6 0.0031 3 13.932 MINOR ENSMUSG00000023832 Acat2 ENSMUST00000159358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023832 Acat2 ENSMUST00000233792 ENSMUSP00000156406 TRANSLATION protein_coding - - - 349.0 19.0 8.0 0.9 395.1 0.0 -4,-7 0.0133 3 10.272 MINOR ENSMUSG00000024299 Adamts10 ENSMUST00000173241 ENSMUSP00000134298 TRANSLATION nonsense_mediated_decay - - 2 323.0 1.0 0.6 0.0 116.4 0.0 3,-1 0.0007 - -2.0 MINOR ENSMUSG00000024299 Adamts10 ENSMUST00000234497 ENSMUSP00000157014 TRANSLATION protein_coding - - - 215.0 1.0 0.6 0.0 0.0 0.0 3,-1 0.0007 - 0.0 MINOR ENSMUSG00000024299 Adamts10 ENSMUST00000234108 - NO_TRANSLATION retained_intron ENSMUSG00000024299 Adamts10 ENSMUST00000173813 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024299 Adamts10 ENSMUST00000174666 - NO_TRANSLATION retained_intron ENSMUSG00000024299 Adamts10 ENSMUST00000234715 ENSMUSP00000157264 TRANSLATION protein_coding - - - 147.0 0.0 0.0 0.0 78.8 0.0 3,-1 0.0004 - 0.0 MINOR ENSMUSG00000024299 Adamts10 ENSMUST00000087623 ENSMUSP00000084905 TRANSLATION protein_coding - CCDS37566.1 5 1104.0 11.0 9.335 10.6 418.4 0.0 3,-1 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000024299 Adamts10 ENSMUST00000172922 ENSMUSP00000133891 TRANSLATION nonsense_mediated_decay - - 1 347.0 1.0 0.6 0.0 116.4 0.0 3,-1 0.0 - -2.0 MINOR ENSMUSG00000024299 Adamts10 ENSMUST00000173030 ENSMUSP00000134549 TRANSLATION nonsense_mediated_decay - - 1 323.0 1.0 0.6 0.0 116.4 0.0 3,-1 0.0007 - -2.0 MINOR ENSMUSG00000024299 Adamts10 ENSMUST00000174170 - NO_TRANSLATION retained_intron ENSMUSG00000024299 Adamts10 ENSMUST00000173972 - NO_TRANSLATION retained_intron ENSMUSG00000024299 Adamts10 ENSMUST00000173931 ENSMUSP00000133434 TRANSLATION nonsense_mediated_decay - - 2 323.0 1.0 0.6 0.0 116.4 0.0 3,-1 0.0007 - -2.0 MINOR ENSMUSG00000024299 Adamts10 ENSMUST00000174348 ENSMUSP00000133856 TRANSLATION nonsense_mediated_decay start - 1 275.0 8.0 4.405 0.0 87.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024299 Adamts10 ENSMUST00000174104 - NO_TRANSLATION retained_intron ENSMUSG00000024299 Adamts10 ENSMUST00000173013 ENSMUSP00000134181 TRANSLATION nonsense_mediated_decay - - 2 323.0 1.0 0.6 0.0 116.4 0.0 3,-1 0.0007 - -2.0 MINOR ENSMUSG00000034681 Rnps1 ENSMUST00000088512 ENSMUSP00000085867 TRANSLATION protein_coding - CCDS37488.1 1 305.0 3.0 3.0 10.3 64.6 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:4 ENSMUSG00000034681 Rnps1 ENSMUST00000234729 - NO_TRANSLATION retained_intron ENSMUSG00000034681 Rnps1 ENSMUST00000115371 ENSMUSP00000111028 TRANSLATION protein_coding - CCDS37487.1 1 282.0 3.0 3.0 9.4 64.6 0.0 -4,-5 0.9293 5 13.709 ALTERNATIVE:1 ENSMUSG00000034681 Rnps1 ENSMUST00000234233 - NO_TRANSLATION retained_intron ENSMUSG00000034681 Rnps1 ENSMUST00000234342 - NO_TRANSLATION retained_intron ENSMUSG00000034681 Rnps1 ENSMUST00000234630 - NO_TRANSLATION retained_intron ENSMUSG00000034681 Rnps1 ENSMUST00000234089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034681 Rnps1 ENSMUST00000163717 ENSMUSP00000126345 TRANSLATION protein_coding - CCDS37488.1 5 305.0 3.0 3.0 10.3 64.6 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:4 ENSMUSG00000034681 Rnps1 ENSMUST00000234977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034681 Rnps1 ENSMUST00000234154 - NO_TRANSLATION retained_intron ENSMUSG00000034681 Rnps1 ENSMUST00000234832 - NO_TRANSLATION retained_intron ENSMUSG00000048992 Prss32 ENSMUST00000154347 ENSMUSP00000116979 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 0.85 0.0 0.0 0.0 2,-3 0.0056 1 -2.0 MINOR ENSMUSG00000048992 Prss32 ENSMUST00000144925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048992 Prss32 ENSMUST00000061725 ENSMUSP00000050389 TRANSLATION protein_coding - CCDS37477.1 1 334.0 6.0 4.96 0.4 237.5 0.0 2,-3 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000048992 Prss32 ENSMUST00000233370 ENSMUSP00000156394 TRANSLATION nonsense_mediated_decay start - - 171.0 3.0 3.098 0.0 133.9 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000090747 Esp8 ENSMUST00000171813 ENSMUSP00000129933 TRANSLATION protein_coding - CCDS57092.1 1 149.0 0.0 0.0 0.0 107.1 0.0 2,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000037130 H2-M10.6 ENSMUST00000041398 ENSMUSP00000039908 TRANSLATION protein_coding - CCDS28726.1 1 330.0 0.0 4.0 0.0 216.6 0.0 2,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043312 Or2y3 ENSMUST00000059560 ENSMUSP00000061861 TRANSLATION protein_coding - CCDS28774.1 - 314.0 0.0 1.0 7.2 191.0 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043312 Or2y3 ENSMUST00000172933 ENSMUSP00000134532 TRANSLATION protein_coding - CCDS28774.1 3 314.0 0.0 1.0 7.2 191.0 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043312 Or2y3 ENSMUST00000216523 ENSMUSP00000150562 TRANSLATION protein_coding - CCDS28774.1 5 314.0 0.0 1.0 7.2 191.0 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000043312 Or2y3 ENSMUST00000215940 ENSMUSP00000149093 TRANSLATION protein_coding - CCDS28774.1 5 314.0 0.0 1.0 7.2 191.0 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000036533 Cdc42ep3 ENSMUST00000233363 ENSMUSP00000156957 TRANSLATION protein_coding stop - - 97.0 0.0 0.8 0.0 41.0 0.0 -4,-5 0.0285 - -2.0 MINOR ENSMUSG00000036533 Cdc42ep3 ENSMUST00000068958 ENSMUSP00000067217 TRANSLATION protein_coding - CCDS28984.1 1 254.0 0.0 0.8 24.9 155.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000025736 Jmjd8 ENSMUST00000123582 - NO_TRANSLATION retained_intron ENSMUSG00000025736 Jmjd8 ENSMUST00000123560 - NO_TRANSLATION retained_intron ENSMUSG00000025736 Jmjd8 ENSMUST00000026832 ENSMUSP00000026832 TRANSLATION protein_coding - CCDS28532.1 1 271.0 2.0 6.83 0.1 44.5 0.0 2,-3 0.7545 2 8.0 ALTERNATIVE:2 ENSMUSG00000025736 Jmjd8 ENSMUST00000143296 - NO_TRANSLATION retained_intron ENSMUSG00000025736 Jmjd8 ENSMUST00000133595 ENSMUSP00000122744 TRANSLATION protein_coding - - 1 269.0 2.0 6.83 1.2 44.5 0.0 2,-3 0.8323 2 9.0 PRINCIPAL:4 ENSMUSG00000025736 Jmjd8 ENSMUST00000152434 ENSMUSP00000119378 TRANSLATION nonsense_mediated_decay - - 3 186.0 0.0 2.75 0.0 0.0 0.0 2,-3 0.0049 2 -2.0 MINOR ENSMUSG00000025736 Jmjd8 ENSMUST00000123692 - NO_TRANSLATION retained_intron ENSMUSG00000025736 Jmjd8 ENSMUST00000144589 - NO_TRANSLATION retained_intron ENSMUSG00000033825 Tpsb2 ENSMUST00000249735 ENSMUSP00000159901 TRANSLATION nonsense_mediated_decay - - - 59.0 0.0 0.5 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000033825 Tpsb2 ENSMUST00000249740 ENSMUSP00000159905 TRANSLATION protein_coding - - - 240.0 3.0 5.45 0.0 149.7 0.0 -,- 0.0 4 8.598 MINOR ENSMUSG00000033825 Tpsb2 ENSMUST00000249743 ENSMUSP00000159907 TRANSLATION nonsense_mediated_decay - - - 67.0 0.0 0.5 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000033825 Tpsb2 ENSMUST00000249730 ENSMUSP00000159898 TRANSLATION protein_coding - - - 248.0 6.0 5.25 0.0 213.4 0.0 -,- 0.0006 5 15.024 MINOR ENSMUSG00000033825 Tpsb2 ENSMUST00000249733 ENSMUSP00000159900 TRANSLATION protein_coding - CCDS28517.1 - 276.0 6.0 6.25 0.0 229.7 0.0 -,- 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000033825 Tpsb2 ENSMUST00000249731 - NO_TRANSLATION retained_intron ENSMUSG00000033825 Tpsb2 ENSMUST00000249739 ENSMUSP00000159904 TRANSLATION nonsense_mediated_decay - - - 66.0 0.0 0.5 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000033825 Tpsb2 ENSMUST00000249736 ENSMUSP00000159902 TRANSLATION nonsense_mediated_decay - - - 66.0 0.0 0.5 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000033825 Tpsb2 ENSMUST00000249738 - NO_TRANSLATION retained_intron ENSMUSG00000033825 Tpsb2 ENSMUST00000249741 - NO_TRANSLATION retained_intron ENSMUSG00000033825 Tpsb2 ENSMUST00000234712 ENSMUSP00000157001 TRANSLATION protein_coding - - - 230.0 3.0 5.448 0.0 149.7 0.0 -,- 0.0 4 8.598 MINOR ENSMUSG00000033825 Tpsb2 ENSMUST00000234477 ENSMUSP00000157286 TRANSLATION protein_coding - CCDS28517.1 - 276.0 6.0 6.25 0.0 229.7 0.0 -,- 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000033825 Tpsb2 ENSMUST00000249732 ENSMUSP00000159899 TRANSLATION protein_coding - CCDS28517.1 - 276.0 6.0 6.25 0.0 229.7 0.0 -,- 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000033825 Tpsb2 ENSMUST00000249734 - NO_TRANSLATION retained_intron ENSMUSG00000033825 Tpsb2 ENSMUST00000249742 ENSMUSP00000159906 TRANSLATION protein_coding - - - 248.0 6.0 5.25 0.0 213.4 0.0 -,- 0.0006 5 15.024 MINOR ENSMUSG00000033825 Tpsb2 ENSMUST00000249737 ENSMUSP00000159903 TRANSLATION nonsense_mediated_decay - - - 59.0 0.0 0.5 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000033825 Tpsb2 ENSMUST00000234057 - NO_TRANSLATION retained_intron ENSMUSG00000033825 Tpsb2 ENSMUST00000249744 ENSMUSP00000159908 TRANSLATION nonsense_mediated_decay - - - 67.0 0.0 0.5 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000140973 ENSMUSP00000156657 TRANSLATION nonsense_mediated_decay start - 1 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0014 - -2.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000232705 ENSMUSP00000156836 TRANSLATION nonsense_mediated_decay - - - 625.0 18.0 2.0 1.0 292.1 0.0 -4,-2 0.0188 - -2.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000232940 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063952 Brpf3 ENSMUST00000233561 ENSMUSP00000156584 TRANSLATION protein_coding - - - 870.0 18.0 6.33 0.0 433.1 0.0 -4,-2 0.137 1 18.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000156029 ENSMUSP00000156780 TRANSLATION protein_coding start - 1 650.0 0.0 4.33 0.0 117.4 0.0 -4,0 0.001 2 -2.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000232997 ENSMUSP00000156622 TRANSLATION nonsense_mediated_decay start - - 597.0 18.0 2.0 0.0 292.1 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000004985 ENSMUSP00000004985 TRANSLATION protein_coding - CCDS37532.1 1 1204.0 18.0 6.33 7.1 433.1 0.0 -4,-2 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000063952 Brpf3 ENSMUST00000233182 ENSMUSP00000156937 TRANSLATION protein_coding stop - - 31.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000233088 ENSMUSP00000156480 TRANSLATION protein_coding - - - 140.0 0.0 3.33 0.0 57.4 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000233646 ENSMUSP00000156825 TRANSLATION protein_coding - - - 934.0 18.0 6.33 0.7 433.1 0.0 -4,-2 0.2753 1 18.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000140587 ENSMUSP00000156521 TRANSLATION protein_coding - - 3 140.0 0.0 3.33 0.0 57.4 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000233701 ENSMUSP00000156455 TRANSLATION protein_coding - - - 1105.0 18.0 3.0 4.9 375.7 0.0 -4,-2 0.3445 1 9.834 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000126868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063952 Brpf3 ENSMUST00000148149 - NO_TRANSLATION retained_intron ENSMUSG00000063952 Brpf3 ENSMUST00000127007 - NO_TRANSLATION retained_intron ENSMUSG00000063952 Brpf3 ENSMUST00000233520 ENSMUSP00000156581 TRANSLATION protein_coding stop - - 50.0 0.0 1.58 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000233709 ENSMUSP00000156740 TRANSLATION nonsense_mediated_decay - - - 792.0 18.0 3.0 0.0 375.7 0.0 -4,-2 0.0215 - -2.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000136233 ENSMUSP00000156420 TRANSLATION protein_coding stop - 3 118.0 0.0 0.4 0.0 25.2 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000063952 Brpf3 ENSMUST00000144022 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071054 Safb ENSMUST00000183041 - NO_TRANSLATION retained_intron ENSMUSG00000071054 Safb ENSMUST00000182454 - NO_TRANSLATION retained_intron ENSMUSG00000071054 Safb ENSMUST00000095224 ENSMUSP00000092849 TRANSLATION protein_coding - CCDS50152.1 5 937.0 0.0 1.7935 0.4 86.8 0.0 -4,-5 1.0 15 8.0 PRINCIPAL:4 ENSMUSG00000071054 Safb ENSMUST00000183318 - NO_TRANSLATION retained_intron ENSMUSG00000071054 Safb ENSMUST00000182031 - NO_TRANSLATION retained_intron ENSMUSG00000071054 Safb ENSMUST00000182159 - NO_TRANSLATION retained_intron ENSMUSG00000071054 Safb ENSMUST00000182533 ENSMUSP00000138277 TRANSLATION protein_coding - - 5 939.0 0.0 1.7935 0.4 86.8 0.0 -4,-5 0.8224 15 8.0 ALTERNATIVE:2 ENSMUSG00000071054 Safb ENSMUST00000182913 - NO_TRANSLATION retained_intron ENSMUSG00000071054 Safb ENSMUST00000182378 - NO_TRANSLATION retained_intron ENSMUSG00000071054 Safb ENSMUST00000182951 ENSMUSP00000138395 TRANSLATION nonsense_mediated_decay start - 5 169.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071054 Safb ENSMUST00000182461 - NO_TRANSLATION retained_intron ENSMUSG00000071054 Safb ENSMUST00000182800 ENSMUSP00000138743 TRANSLATION protein_coding stop - 3 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000061613 U2af1 ENSMUST00000166526 ENSMUSP00000129864 TRANSLATION protein_coding - CCDS50055.1 2 239.0 8.0 4.95 2.2 87.1 0.0 -4,-5 0.8454 2 18.694 MINOR ENSMUSG00000061613 U2af1 ENSMUST00000014684 ENSMUSP00000014684 TRANSLATION protein_coding - CCDS28611.1 1 239.0 8.0 4.955 4.4 87.1 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000061613 U2af1 ENSMUST00000235600 - NO_TRANSLATION retained_intron ENSMUSG00000061613 U2af1 ENSMUST00000236293 - NO_TRANSLATION retained_intron ENSMUSG00000061613 U2af1 ENSMUST00000236260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061613 U2af1 ENSMUST00000235969 - NO_TRANSLATION retained_intron ENSMUSG00000061613 U2af1 ENSMUST00000236475 ENSMUSP00000157485 TRANSLATION protein_coding stop - - 126.0 4.0 2.75 0.0 57.8 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000061613 U2af1 ENSMUST00000237323 ENSMUSP00000157853 TRANSLATION nonsense_mediated_decay - - - 75.0 4.0 1.7 0.0 33.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061613 U2af1 ENSMUST00000238046 ENSMUSP00000157991 TRANSLATION nonsense_mediated_decay - - - 45.0 4.0 1.25 0.0 33.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005371 Fbxo11 ENSMUST00000135639 ENSMUSP00000138653 TRANSLATION nonsense_mediated_decay start - 5 137.0 0.0 0.0 0.0 53.7 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000005371 Fbxo11 ENSMUST00000127334 - NO_TRANSLATION retained_intron ENSMUSG00000005371 Fbxo11 ENSMUST00000235112 ENSMUSP00000157024 TRANSLATION protein_coding - - - 842.0 8.0 3.6 28.7 280.7 0.0 -4,-5 1.0 9 21.838 PRINCIPAL:1 ENSMUSG00000005371 Fbxo11 ENSMUST00000005504 ENSMUSP00000005504 TRANSLATION protein_coding - CCDS37717.1 5 930.0 8.0 3.6 0.0 283.4 0.0 -4,-2 0.3249 9 18.0 MINOR ENSMUSG00000005371 Fbxo11 ENSMUST00000235056 ENSMUSP00000157142 TRANSLATION protein_coding stop - - 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005371 Fbxo11 ENSMUST00000130379 ENSMUSP00000121206 TRANSLATION protein_coding - - 1 842.0 8.0 3.6 28.7 280.7 0.0 -4,-5 1.0 9 21.838 PRINCIPAL:1 ENSMUSG00000079605 Zbtb9 ENSMUST00000120016 ENSMUSP00000112778 TRANSLATION protein_coding - CCDS37520.1 1 459.0 10.0 0.5 0.1 76.5 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000079605 Zbtb9 ENSMUST00000237633 ENSMUSP00000157541 TRANSLATION nonsense_mediated_decay - CCDS37520.1 - 459.0 10.0 0.5 0.1 76.5 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000024309 Pfdn6 ENSMUST00000025163 ENSMUSP00000025163 TRANSLATION protein_coding - CCDS28636.1 1 127.0 0.0 3.25 21.0 90.9 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000024309 Pfdn6 ENSMUST00000174048 ENSMUSP00000133656 TRANSLATION protein_coding - CCDS28636.1 2 127.0 0.0 3.25 21.0 90.9 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000024309 Pfdn6 ENSMUST00000179418 ENSMUSP00000137072 TRANSLATION protein_coding - CCDS28636.1 3 127.0 0.0 3.25 21.0 90.9 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000024309 Pfdn6 ENSMUST00000173678 ENSMUSP00000156997 TRANSLATION protein_coding - - 2 87.0 0.0 2.25 2.0 69.7 0.0 -4,-5 0.031 4 8.804 MINOR ENSMUSG00000024309 Pfdn6 ENSMUST00000173363 - NO_TRANSLATION retained_intron ENSMUSG00000024309 Pfdn6 ENSMUST00000174426 ENSMUSP00000134069 TRANSLATION protein_coding - - 2 101.0 0.0 2.5 0.0 77.8 0.0 -4,-5 0.0009 7 9.636 MINOR ENSMUSG00000015461 Atf6b ENSMUST00000174156 - NO_TRANSLATION retained_intron ENSMUSG00000015461 Atf6b ENSMUST00000174519 ENSMUSP00000133558 TRANSLATION nonsense_mediated_decay - - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015461 Atf6b ENSMUST00000174614 ENSMUSP00000133786 TRANSLATION nonsense_mediated_decay - - 3 72.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000015461 Atf6b ENSMUST00000173984 ENSMUSP00000133516 TRANSLATION protein_coding - - 5 709.0 0.0 0.866 4.3 37.5 1.0 -4,-6 0.7616 3 10.0 ALTERNATIVE:2 ENSMUSG00000015461 Atf6b ENSMUST00000015605 ENSMUSP00000015605 TRANSLATION protein_coding - CCDS28655.2 1 706.0 0.0 0.866 4.3 37.5 1.0 -4,-6 1.0 3 10.0 PRINCIPAL:4 ENSMUSG00000000579 Dynlt1c ENSMUST00000124894 - NO_TRANSLATION retained_intron ENSMUSG00000000579 Dynlt1c ENSMUST00000149027 - NO_TRANSLATION retained_intron ENSMUSG00000000579 Dynlt1c ENSMUST00000138598 - NO_TRANSLATION retained_intron ENSMUSG00000000579 Dynlt1c ENSMUST00000092966 ENSMUSP00000090644 TRANSLATION protein_coding - CCDS57042.1 1 113.0 0.0 3.33 36.9 110.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024049 Myom1 ENSMUST00000232716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024049 Myom1 ENSMUST00000233893 ENSMUSP00000156962 TRANSLATION protein_coding stop - - 233.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0011 9 -2.0 MINOR ENSMUSG00000024049 Myom1 ENSMUST00000233418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024049 Myom1 ENSMUST00000233790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024049 Myom1 ENSMUST00000073211 ENSMUSP00000072945 TRANSLATION protein_coding - CCDS37685.1 1 1667.0 0.0 23.667 0.3 477.7 0.0 -4,-7 0.6292 81 8.0 ALTERNATIVE:2 ENSMUSG00000024049 Myom1 ENSMUST00000179759 ENSMUSP00000136266 TRANSLATION protein_coding - CCDS50176.1 5 1569.0 0.0 23.535 1.6 477.7 0.0 -4,-7 1.0 78 8.736 PRINCIPAL:2 ENSMUSG00000024049 Myom1 ENSMUST00000233653 - NO_TRANSLATION retained_intron ENSMUSG00000024049 Myom1 ENSMUST00000232851 - NO_TRANSLATION retained_intron ENSMUSG00000024049 Myom1 ENSMUST00000024847 ENSMUSP00000024847 TRANSLATION protein_coding - - 5 1569.0 0.0 23.403 1.6 477.7 0.0 -4,-7 0.7116 78 8.472 ALTERNATIVE:2 ENSMUSG00000056116 H2-T22 ENSMUST00000173280 ENSMUSP00000134019 TRANSLATION nonsense_mediated_decay - - 1 45.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0017 - -2.0 MINOR ENSMUSG00000056116 H2-T22 ENSMUST00000080015 ENSMUSP00000078927 TRANSLATION protein_coding - CCDS37608.1 1 379.0 0.0 3.9 0.0 214.2 1.0 3,-4 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000056116 H2-T22 ENSMUST00000058801 ENSMUSP00000056041 TRANSLATION protein_coding - CCDS84308.1 1 344.0 0.0 3.5 0.0 212.7 0.0 3,-4 0.1765 - 7.202 ALTERNATIVE:2 ENSMUSG00000056116 H2-T22 ENSMUST00000077960 ENSMUSP00000077111 TRANSLATION protein_coding - CCDS37608.1 1 379.0 0.0 3.9 0.0 214.2 1.0 3,-4 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000056116 H2-T22 ENSMUST00000172633 - NO_TRANSLATION retained_intron ENSMUSG00000039481 Nrtn ENSMUST00000044752 ENSMUSP00000046512 TRANSLATION protein_coding - CCDS28913.1 1 195.0 0.0 1.0 9.4 45.3 0.0 1,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000003198 Zfp959 ENSMUST00000224294 - NO_TRANSLATION retained_intron ENSMUSG00000003198 Zfp959 ENSMUST00000224379 ENSMUSP00000153698 TRANSLATION protein_coding stop - - 230.0 6.0 2.25 0.0 75.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000003198 Zfp959 ENSMUST00000054780 ENSMUSP00000053979 TRANSLATION protein_coding - CCDS37657.1 1 539.0 42.0 3.23 0.0 219.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000024063 Lbh ENSMUST00000148556 ENSMUSP00000123062 TRANSLATION nonsense_mediated_decay start - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024063 Lbh ENSMUST00000024857 ENSMUSP00000024857 TRANSLATION protein_coding - CCDS28964.1 1 105.0 0.0 0.0 19.4 102.3 0.0 -4,-5 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000038762 Abcf1 ENSMUST00000174834 - NO_TRANSLATION retained_intron ENSMUSG00000038762 Abcf1 ENSMUST00000172661 ENSMUSP00000134092 TRANSLATION nonsense_mediated_decay - - 5 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038762 Abcf1 ENSMUST00000174128 ENSMUSP00000134716 TRANSLATION protein_coding stop - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038762 Abcf1 ENSMUST00000043757 ENSMUSP00000036881 TRANSLATION protein_coding - CCDS28713.1 1 837.0 18.0 9.052 6.0 156.9 0.0 -4,-5 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000038762 Abcf1 ENSMUST00000173111 - NO_TRANSLATION retained_intron ENSMUSG00000038762 Abcf1 ENSMUST00000087205 - NO_TRANSLATION retained_intron ENSMUSG00000038762 Abcf1 ENSMUST00000173125 - NO_TRANSLATION retained_intron ENSMUSG00000038762 Abcf1 ENSMUST00000173090 - NO_TRANSLATION retained_intron ENSMUSG00000003546 Klc4 ENSMUST00000233974 ENSMUSP00000156564 TRANSLATION protein_coding - CCDS28832.1 - 619.0 0.0 6.375 6.5 178.2 0.0 -4,-5 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000003546 Klc4 ENSMUST00000003642 ENSMUSP00000003642 TRANSLATION protein_coding - CCDS28832.1 1 619.0 0.0 6.375 6.5 178.2 0.0 -4,-5 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000060475 Wtap ENSMUST00000233467 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060475 Wtap ENSMUST00000159986 ENSMUSP00000123961 TRANSLATION protein_coding - CCDS49949.1 1 151.0 0.0 3.83 9.4 99.1 0.0 -4,-5 0.1783 8 4.654 MINOR ENSMUSG00000060475 Wtap ENSMUST00000233867 ENSMUSP00000156876 TRANSLATION protein_coding stop - - 110.0 0.0 2.58 0.0 33.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000060475 Wtap ENSMUST00000162395 ENSMUSP00000125419 TRANSLATION protein_coding stop - 3 80.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000060475 Wtap ENSMUST00000159551 ENSMUSP00000124205 TRANSLATION protein_coding - CCDS49950.1 5 396.0 0.0 5.23 24.1 208.0 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000060475 Wtap ENSMUST00000007007 ENSMUSP00000007007 TRANSLATION protein_coding - CCDS49950.1 1 396.0 0.0 5.23 24.1 208.0 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000060475 Wtap ENSMUST00000159104 ENSMUSP00000125337 TRANSLATION protein_coding start - 5 139.0 0.0 3.83 0.0 101.4 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000060475 Wtap ENSMUST00000160781 ENSMUSP00000124138 TRANSLATION protein_coding - CCDS49949.1 1 151.0 0.0 3.83 9.4 99.1 0.0 -4,-5 0.1783 8 4.654 MINOR ENSMUSG00000060475 Wtap ENSMUST00000161901 ENSMUSP00000156835 TRANSLATION protein_coding stop - 3 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054134 Umodl1 ENSMUST00000235827 ENSMUSP00000157567 TRANSLATION protein_coding - - - 70.0 0.0 0.099 0.0 0.0 1.0 -4,-7 0.0 - 0.276 MINOR ENSMUSG00000054134 Umodl1 ENSMUST00000235156 ENSMUSP00000157913 TRANSLATION protein_coding - - - 1233.0 17.0 2.172 0.0 248.1 1.0 3,-2 0.4989 - 14.0 ALTERNATIVE:2 ENSMUSG00000054134 Umodl1 ENSMUST00000237889 ENSMUSP00000157726 TRANSLATION protein_coding - - - 1319.0 17.0 2.172 0.0 248.1 1.0 3,-2 1.0 - 14.0 PRINCIPAL:4 ENSMUSG00000054134 Umodl1 ENSMUST00000114555 ENSMUSP00000110202 TRANSLATION protein_coding - CCDS37543.1 5 1348.0 17.0 2.172 0.0 248.1 1.0 3,-2 0.9012 - 14.0 ALTERNATIVE:2 ENSMUSG00000002249 Tead3 ENSMUST00000146668 - NO_TRANSLATION retained_intron ENSMUSG00000002249 Tead3 ENSMUST00000114799 ENSMUSP00000110447 TRANSLATION protein_coding - CCDS50046.1 1 465.0 0.0 7.9 0.0 0.0 0.0 -4,-2 0.2241 3 6.0 ALTERNATIVE:2 ENSMUSG00000002249 Tead3 ENSMUST00000127212 - NO_TRANSLATION retained_intron ENSMUSG00000002249 Tead3 ENSMUST00000154873 ENSMUSP00000118582 TRANSLATION protein_coding - CCDS28577.3 1 439.0 0.0 7.9 2.3 0.0 0.0 -4,-5 1.0 3 7.0 PRINCIPAL:4 ENSMUSG00000002249 Tead3 ENSMUST00000151557 - NO_TRANSLATION retained_intron ENSMUSG00000002249 Tead3 ENSMUST00000226172 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002249 Tead3 ENSMUST00000219703 ENSMUSP00000152030 TRANSLATION protein_coding - - 1 439.0 0.0 7.9 2.3 0.0 0.0 -4,-7 0.8073 3 7.0 ALTERNATIVE:2 ENSMUSG00000002249 Tead3 ENSMUST00000233330 - NO_TRANSLATION retained_intron ENSMUSG00000002249 Tead3 ENSMUST00000156862 ENSMUSP00000115443 TRANSLATION protein_coding - CCDS28577.3 1 439.0 0.0 7.9 2.3 0.0 0.0 -4,-5 1.0 3 7.0 PRINCIPAL:4 ENSMUSG00000034595 Ppp1r18 ENSMUST00000144382 ENSMUSP00000116100 TRANSLATION protein_coding - CCDS50094.1 1 594.0 0.0 0.0 0.1 231.2 0.0 -4,-7 0.4788 13 2.0 ALTERNATIVE:2 ENSMUSG00000034595 Ppp1r18 ENSMUST00000113814 ENSMUSP00000109445 TRANSLATION protein_coding - CCDS50094.1 1 594.0 0.0 0.0 0.1 231.2 0.0 -4,-7 0.4788 13 2.0 ALTERNATIVE:2 ENSMUSG00000034595 Ppp1r18 ENSMUST00000190496 ENSMUSP00000140652 TRANSLATION protein_coding - - 1 166.0 0.0 0.0 0.0 108.3 0.0 -4,-1 0.0 5 0.0 MINOR ENSMUSG00000034595 Ppp1r18 ENSMUST00000122899 ENSMUSP00000120343 TRANSLATION protein_coding - CCDS50094.1 1 594.0 0.0 0.0 0.1 231.2 0.0 -4,-7 0.4788 13 2.0 ALTERNATIVE:2 ENSMUSG00000034595 Ppp1r18 ENSMUST00000187690 ENSMUSP00000141094 TRANSLATION protein_coding - CCDS50094.1 1 594.0 0.0 0.0 0.1 231.2 0.0 -4,-7 0.4788 13 2.0 ALTERNATIVE:2 ENSMUSG00000034595 Ppp1r18 ENSMUST00000127442 ENSMUSP00000115753 TRANSLATION protein_coding - - 1 609.0 0.0 0.0 0.0 231.2 0.0 -4,-7 0.7614 12 2.0 PRINCIPAL:2 ENSMUSG00000024052 Lpin2 ENSMUST00000125665 - NO_TRANSLATION retained_intron ENSMUSG00000024052 Lpin2 ENSMUST00000142842 - NO_TRANSLATION retained_intron ENSMUSG00000024052 Lpin2 ENSMUST00000140150 - NO_TRANSLATION retained_intron ENSMUSG00000024052 Lpin2 ENSMUST00000133156 - NO_TRANSLATION retained_intron ENSMUSG00000024052 Lpin2 ENSMUST00000156565 - NO_TRANSLATION retained_intron ENSMUSG00000024052 Lpin2 ENSMUST00000156570 ENSMUSP00000120634 TRANSLATION protein_coding - - 1 459.0 0.0 0.8 0.0 153.9 0.0 -4,-6 0.0 3 1.548 MINOR ENSMUSG00000024052 Lpin2 ENSMUST00000149973 - NO_TRANSLATION retained_intron ENSMUSG00000024052 Lpin2 ENSMUST00000130750 - NO_TRANSLATION retained_intron ENSMUSG00000024052 Lpin2 ENSMUST00000154507 ENSMUSP00000127035 TRANSLATION nonsense_mediated_decay start - 5 93.0 0.0 0.0 0.0 60.8 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000024052 Lpin2 ENSMUST00000135589 ENSMUSP00000115061 TRANSLATION nonsense_mediated_decay - - 1 256.0 0.0 0.8 0.0 153.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024052 Lpin2 ENSMUST00000053173 - NO_TRANSLATION retained_intron ENSMUSG00000024052 Lpin2 ENSMUST00000129635 ENSMUSP00000119282 TRANSLATION protein_coding - CCDS28956.1 1 893.0 8.0 3.025 7.6 612.4 0.0 -4,-6 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000024052 Lpin2 ENSMUST00000126681 ENSMUSP00000118610 TRANSLATION protein_coding - CCDS50177.1 1 931.0 8.0 3.025 3.1 612.4 0.0 -4,-5 0.5213 10 18.636 MINOR ENSMUSG00000023945 Slc5a7 ENSMUST00000095712 ENSMUSP00000093379 TRANSLATION protein_coding - CCDS28885.1 1 580.0 0.0 7.45 18.7 116.8 12.0 1,-4 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000023945 Slc5a7 ENSMUST00000233507 - NO_TRANSLATION retained_intron ENSMUSG00000023945 Slc5a7 ENSMUST00000233758 ENSMUSP00000156430 TRANSLATION protein_coding stop - - 34.0 0.0 0.0 0.0 0.0 1.0 0,-5 0.0 - -2.0 MINOR ENSMUSG00000024369 Nelfe ENSMUST00000165953 ENSMUSP00000131195 TRANSLATION protein_coding - CCDS28662.1 1 367.0 0.0 2.5 0.0 42.8 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000024369 Nelfe ENSMUST00000174888 - NO_TRANSLATION retained_intron ENSMUSG00000024369 Nelfe ENSMUST00000173357 ENSMUSP00000134272 TRANSLATION protein_coding - CCDS28662.1 1 367.0 0.0 2.5 0.0 42.8 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000024369 Nelfe ENSMUST00000174075 - NO_TRANSLATION retained_intron ENSMUSG00000024369 Nelfe ENSMUST00000173775 - NO_TRANSLATION retained_intron ENSMUSG00000024369 Nelfe ENSMUST00000097343 ENSMUSP00000094956 TRANSLATION protein_coding - CCDS28662.1 5 367.0 0.0 2.5 0.0 42.8 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000024369 Nelfe ENSMUST00000173065 ENSMUSP00000133934 TRANSLATION protein_coding stop - 2 228.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 5 -2.0 MINOR ENSMUSG00000002496 Tsc2 ENSMUST00000226242 - NO_TRANSLATION retained_intron ENSMUSG00000002496 Tsc2 ENSMUST00000226691 - NO_TRANSLATION retained_intron ENSMUSG00000002496 Tsc2 ENSMUST00000226284 ENSMUSP00000153869 TRANSLATION protein_coding - - - 1785.0 0.0 24.46875 7.6 950.3 0.0 -4,-6 0.8927 32 10.538 PRINCIPAL:4 ENSMUSG00000002496 Tsc2 ENSMUST00000227804 ENSMUSP00000153864 TRANSLATION protein_coding start - - 237.0 0.0 3.216 0.0 109.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000002496 Tsc2 ENSMUST00000228729 - NO_TRANSLATION retained_intron ENSMUSG00000002496 Tsc2 ENSMUST00000227658 ENSMUSP00000153770 TRANSLATION nonsense_mediated_decay start - - 97.0 0.0 1.75 0.0 0.0 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000002496 Tsc2 ENSMUST00000227509 ENSMUSP00000154493 TRANSLATION protein_coding stop - - 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0247 - -2.0 MINOR ENSMUSG00000002496 Tsc2 ENSMUST00000227745 ENSMUSP00000154338 TRANSLATION protein_coding - - - 1808.0 0.0 24.46875 6.8 950.3 0.0 -4,-6 0.7709 32 10.232 ALTERNATIVE:1 ENSMUSG00000002496 Tsc2 ENSMUST00000227330 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002496 Tsc2 ENSMUST00000226309 - NO_TRANSLATION retained_intron ENSMUSG00000002496 Tsc2 ENSMUST00000228220 - NO_TRANSLATION retained_intron ENSMUSG00000002496 Tsc2 ENSMUST00000226473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002496 Tsc2 ENSMUST00000227754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002496 Tsc2 ENSMUST00000227543 - NO_TRANSLATION retained_intron ENSMUSG00000002496 Tsc2 ENSMUST00000226428 - NO_TRANSLATION retained_intron ENSMUSG00000002496 Tsc2 ENSMUST00000227432 - NO_TRANSLATION retained_intron ENSMUSG00000002496 Tsc2 ENSMUST00000226985 - NO_TRANSLATION retained_intron ENSMUSG00000002496 Tsc2 ENSMUST00000097373 ENSMUSP00000094986 TRANSLATION protein_coding - CCDS28486.1 1 1742.0 0.0 23.46875 8.8 950.3 0.0 -4,-6 1.0 30 9.002 MINOR ENSMUSG00000002496 Tsc2 ENSMUST00000226398 ENSMUSP00000153792 TRANSLATION protein_coding - CCDS28486.1 - 1742.0 0.0 23.46875 8.8 950.3 0.0 -4,-6 1.0 30 9.002 MINOR ENSMUSG00000002496 Tsc2 ENSMUST00000228412 ENSMUSP00000154706 TRANSLATION protein_coding - - - 1741.0 0.0 23.46875 8.8 950.3 0.0 -4,-6 0.8268 30 9.002 MINOR ENSMUSG00000002496 Tsc2 ENSMUST00000227094 - NO_TRANSLATION retained_intron ENSMUSG00000002496 Tsc2 ENSMUST00000227607 ENSMUSP00000153758 TRANSLATION protein_coding stop - - 1359.0 0.0 18.31 0.0 805.3 0.0 -4,-5 0.0504 20 -2.0 MINOR ENSMUSG00000024026 Glo1 ENSMUST00000236995 ENSMUSP00000158067 TRANSLATION nonsense_mediated_decay - - - 136.0 0.0 3.712 0.0 37.8 0.0 -4,-5 0.0004 8 -2.0 MINOR ENSMUSG00000024026 Glo1 ENSMUST00000236335 ENSMUSP00000158296 TRANSLATION protein_coding - CCDS28600.1 - 184.0 2.0 5.16 16.5 83.5 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000024026 Glo1 ENSMUST00000236619 ENSMUSP00000157517 TRANSLATION nonsense_mediated_decay - - - 109.0 0.0 1.5 0.0 21.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024026 Glo1 ENSMUST00000235547 ENSMUSP00000157858 TRANSLATION protein_coding - CCDS28600.1 - 184.0 2.0 5.16 16.5 83.5 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000024026 Glo1 ENSMUST00000024823 ENSMUSP00000024823 TRANSLATION nonsense_mediated_decay - - 1 109.0 0.0 1.5 0.0 21.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024026 Glo1 ENSMUST00000237343 - NO_TRANSLATION retained_intron ENSMUSG00000024026 Glo1 ENSMUST00000237063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024026 Glo1 ENSMUST00000167624 ENSMUSP00000126586 TRANSLATION protein_coding - CCDS28600.1 2 184.0 2.0 5.16 16.5 83.5 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000024026 Glo1 ENSMUST00000235171 ENSMUSP00000158475 TRANSLATION protein_coding - - - 151.0 0.0 2.83 0.0 29.2 0.0 -4,-5 0.0 6 3.438 MINOR ENSMUSG00000024026 Glo1 ENSMUST00000235873 - NO_TRANSLATION retained_intron ENSMUSG00000024079 Eif2ak2 ENSMUST00000171852 - NO_TRANSLATION retained_intron ENSMUSG00000024079 Eif2ak2 ENSMUST00000024884 ENSMUSP00000024884 TRANSLATION protein_coding - CCDS28980.1 1 515.0 16.0 10.45 0.0 279.5 0.0 -4,-5 0.9999 8 18.0 PRINCIPAL:1 ENSMUSG00000024079 Eif2ak2 ENSMUST00000169940 - NO_TRANSLATION retained_intron ENSMUSG00000024079 Eif2ak2 ENSMUST00000171451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024085 Man2a1 ENSMUST00000169239 - NO_TRANSLATION retained_intron ENSMUSG00000024085 Man2a1 ENSMUST00000169668 ENSMUSP00000130529 TRANSLATION protein_coding start - 5 280.0 0.0 5.55 0.0 163.5 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000024085 Man2a1 ENSMUST00000086723 ENSMUSP00000083928 TRANSLATION protein_coding - CCDS28938.1 1 1150.0 5.0 19.88 9.2 774.0 0.0 -2,-5 1.0 38 20.0 PRINCIPAL:1 ENSMUSG00000042345 Ubash3a ENSMUST00000048656 ENSMUSP00000045890 TRANSLATION protein_coding - - 1 527.0 6.0 6.8 6.5 78.5 0.0 -4,-6 0.5013 6 12.042 MINOR ENSMUSG00000042345 Ubash3a ENSMUST00000235375 - NO_TRANSLATION retained_intron ENSMUSG00000042345 Ubash3a ENSMUST00000237216 ENSMUSP00000158184 TRANSLATION protein_coding start - - 194.0 4.0 5.5 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000042345 Ubash3a ENSMUST00000236599 - NO_TRANSLATION retained_intron ENSMUSG00000042345 Ubash3a ENSMUST00000236745 ENSMUSP00000158544 TRANSLATION protein_coding - CCDS50054.1 - 624.0 8.0 10.0 11.7 78.5 0.0 -4,-6 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000042345 Ubash3a ENSMUST00000173776 ENSMUSP00000134557 TRANSLATION protein_coding stop - 3 116.0 0.0 1.5 0.0 23.7 0.0 -4,-5 0.0001 1 -2.0 MINOR ENSMUSG00000042345 Ubash3a ENSMUST00000151620 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042345 Ubash3a ENSMUST00000147686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042345 Ubash3a ENSMUST00000144772 ENSMUSP00000119279 TRANSLATION nonsense_mediated_decay - - 1 129.0 0.0 1.5 0.0 25.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000234674 ENSMUSP00000157349 TRANSLATION nonsense_mediated_decay - - - 64.0 0.0 1.0 0.0 39.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000234098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039183 Nubp2 ENSMUST00000234598 ENSMUSP00000157118 TRANSLATION protein_coding start - - 189.0 4.0 4.47 0.0 209.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000234579 ENSMUSP00000157158 TRANSLATION nonsense_mediated_decay - - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000234915 - NO_TRANSLATION retained_intron ENSMUSG00000039183 Nubp2 ENSMUST00000234261 ENSMUSP00000157043 TRANSLATION nonsense_mediated_decay - - - 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000234583 ENSMUSP00000157034 TRANSLATION protein_coding - - - 251.0 13.0 6.33 0.0 254.2 0.0 -4,-5 0.0074 5 11.778 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000234352 ENSMUSP00000157112 TRANSLATION nonsense_mediated_decay - - - 50.0 7.0 1.0 0.0 45.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000234597 ENSMUSP00000157064 TRANSLATION protein_coding - - - 211.0 6.0 5.99 4.0 228.6 0.0 -4,-6 0.3058 2 6.434 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000044252 ENSMUSP00000049319 TRANSLATION protein_coding - CCDS28500.1 1 275.0 13.0 7.32 4.9 324.9 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000039183 Nubp2 ENSMUST00000234293 ENSMUSP00000157234 TRANSLATION nonsense_mediated_decay - - - 46.0 7.0 1.0 0.0 45.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000234968 ENSMUSP00000157175 TRANSLATION protein_coding - - - 245.0 11.0 5.82 0.0 295.3 0.0 -4,-5 0.0005 3 11.892 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000234489 ENSMUSP00000157348 TRANSLATION nonsense_mediated_decay - - - 133.0 7.0 2.33 0.0 136.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000235055 ENSMUSP00000157236 TRANSLATION nonsense_mediated_decay - - - 58.0 7.0 1.0 0.0 45.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000039183 Nubp2 ENSMUST00000234928 ENSMUSP00000157378 TRANSLATION protein_coding - - - 211.0 6.0 5.99 4.0 228.6 0.0 -4,-6 0.3058 2 6.434 MINOR ENSMUSG00000096255 Dynlt1b ENSMUST00000179569 ENSMUSP00000137171 TRANSLATION protein_coding - CCDS49936.1 1 113.0 0.0 3.33 36.9 110.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000052031 Tagap1 ENSMUST00000063683 ENSMUSP00000070466 TRANSLATION protein_coding - CCDS49940.1 1 505.0 0.0 2.5 0.0 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000041354 Rgl2 ENSMUST00000174410 - NO_TRANSLATION retained_intron ENSMUSG00000041354 Rgl2 ENSMUST00000173379 - NO_TRANSLATION retained_intron ENSMUSG00000041354 Rgl2 ENSMUST00000172468 - NO_TRANSLATION retained_intron ENSMUSG00000041354 Rgl2 ENSMUST00000173718 - NO_TRANSLATION retained_intron ENSMUSG00000041354 Rgl2 ENSMUST00000173266 ENSMUSP00000157027 TRANSLATION protein_coding stop - 3 22.0 0.0 0.75 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000041354 Rgl2 ENSMUST00000047503 ENSMUSP00000041082 TRANSLATION protein_coding - CCDS28635.1 1 778.0 0.0 11.31 5.1 254.5 0.0 -4,-7 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000041354 Rgl2 ENSMUST00000173284 ENSMUSP00000134312 TRANSLATION protein_coding start/stop - 5 314.0 0.0 4.68 0.0 48.5 0.0 -4,-5 0.0008 6 -2.0 MINOR ENSMUSG00000041354 Rgl2 ENSMUST00000173502 - NO_TRANSLATION retained_intron ENSMUSG00000041354 Rgl2 ENSMUST00000174442 - NO_TRANSLATION retained_intron ENSMUSG00000041354 Rgl2 ENSMUST00000173258 - NO_TRANSLATION retained_intron ENSMUSG00000041354 Rgl2 ENSMUST00000234070 - NO_TRANSLATION retained_intron ENSMUSG00000041354 Rgl2 ENSMUST00000174676 - NO_TRANSLATION retained_intron ENSMUSG00000041354 Rgl2 ENSMUST00000234226 ENSMUSP00000157230 TRANSLATION protein_coding stop - - 63.0 0.0 1.75 0.0 0.0 0.0 -2,0 0.0 1 -2.0 MINOR ENSMUSG00000041354 Rgl2 ENSMUST00000173153 - NO_TRANSLATION retained_intron ENSMUSG00000024072 Yipf4 ENSMUST00000234939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024072 Yipf4 ENSMUST00000235064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024072 Yipf4 ENSMUST00000024873 ENSMUSP00000024873 TRANSLATION protein_coding - CCDS28971.1 1 246.0 0.0 2.9 11.7 38.6 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000024072 Yipf4 ENSMUST00000234448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024072 Yipf4 ENSMUST00000234432 ENSMUSP00000157350 TRANSLATION nonsense_mediated_decay - - - 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000024072 Yipf4 ENSMUST00000234853 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000093957 Esp3 ENSMUST00000177574 ENSMUSP00000136597 TRANSLATION protein_coding - CCDS57094.1 1 87.0 0.0 0.0 0.0 83.4 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000023993 Treml1 ENSMUST00000225849 ENSMUSP00000153104 TRANSLATION protein_coding - - - 243.0 0.0 2.0 0.0 0.0 1.0 3,-2 0.2094 3 6.0 ALTERNATIVE:2 ENSMUSG00000023993 Treml1 ENSMUST00000024792 ENSMUSP00000024792 TRANSLATION protein_coding - - 1 317.0 0.0 2.0 0.4 0.0 1.0 3,-2 0.7624 7 6.0 ALTERNATIVE:2 ENSMUSG00000023993 Treml1 ENSMUST00000223956 ENSMUSP00000153029 TRANSLATION nonsense_mediated_decay - - - 99.0 0.0 1.0 0.0 0.0 0.0 3,-2 0.0982 - -2.0 MINOR ENSMUSG00000023993 Treml1 ENSMUST00000223968 - NO_TRANSLATION retained_intron ENSMUSG00000023993 Treml1 ENSMUST00000224001 ENSMUSP00000153300 TRANSLATION protein_coding - CCDS28866.1 - 322.0 0.0 2.0 0.1 0.0 1.0 3,-2 0.7728 7 6.0 PRINCIPAL:4 ENSMUSG00000053600 Zfp472 ENSMUST00000039132 ENSMUSP00000036514 TRANSLATION protein_coding - CCDS50062.1 1 534.0 48.0 2.0 0.1 160.2 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000053600 Zfp472 ENSMUST00000234770 ENSMUSP00000157247 TRANSLATION protein_coding stop - - 98.0 0.0 1.2 0.0 75.9 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000000127 Fer ENSMUST00000233225 ENSMUSP00000156905 TRANSLATION protein_coding stop - - 160.0 0.0 1.638 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000000127 Fer ENSMUST00000232945 ENSMUSP00000156416 TRANSLATION protein_coding - - - 645.0 12.0 8.098 0.0 194.0 0.0 -4,-5 0.0012 14 1.998 MINOR ENSMUSG00000000127 Fer ENSMUST00000233190 ENSMUSP00000156523 TRANSLATION protein_coding - - - 765.0 18.0 11.098 1.7 438.2 0.0 -4,-5 0.0834 14 15.714 MINOR ENSMUSG00000000127 Fer ENSMUST00000038080 ENSMUSP00000037418 TRANSLATION protein_coding - CCDS28937.1 1 453.0 18.0 8.3 3.3 410.4 0.0 -4,-5 0.0842 6 9.916 MINOR ENSMUSG00000000127 Fer ENSMUST00000000129 ENSMUSP00000000129 TRANSLATION protein_coding - CCDS28936.1 1 823.0 18.0 11.898 24.7 451.6 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000057409 Zfp53 ENSMUST00000233158 ENSMUSP00000156751 TRANSLATION protein_coding - CCDS28440.1 - 652.0 63.0 1.0 0.0 407.7 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000057409 Zfp53 ENSMUST00000076664 ENSMUSP00000075960 TRANSLATION protein_coding - CCDS28440.1 5 652.0 63.0 1.0 0.0 407.7 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000040694 Apobec2 ENSMUST00000233707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040694 Apobec2 ENSMUST00000046549 ENSMUSP00000047402 TRANSLATION protein_coding - CCDS28868.1 1 224.0 6.0 1.0 11.5 174.1 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000045394 Epcam ENSMUST00000234623 ENSMUSP00000157040 TRANSLATION protein_coding - CCDS29018.1 - 315.0 0.0 6.75 7.6 45.6 1.0 3,-2 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000045394 Epcam ENSMUST00000235125 ENSMUSP00000157220 TRANSLATION protein_coding stop - - 48.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 1 -2.0 MINOR ENSMUSG00000045394 Epcam ENSMUST00000234354 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045394 Epcam ENSMUST00000234009 ENSMUSP00000157099 TRANSLATION protein_coding stop - - 111.0 0.0 2.25 0.0 23.4 0.0 3,-2 0.0018 3 -2.0 MINOR ENSMUSG00000045394 Epcam ENSMUST00000053577 ENSMUSP00000061935 TRANSLATION protein_coding - CCDS29018.1 5 315.0 0.0 6.75 7.6 45.6 1.0 3,-2 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000044172 Ptx4 ENSMUST00000232902 ENSMUSP00000156495 TRANSLATION protein_coding - - - 452.0 0.0 0.565 0.0 103.7 0.0 3,-3 0.1473 - 6.0 ALTERNATIVE:2 ENSMUSG00000044172 Ptx4 ENSMUST00000054930 ENSMUSP00000055984 TRANSLATION protein_coding - CCDS50031.1 1 482.0 0.0 0.565 1.4 103.7 0.0 4,-2 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000044172 Ptx4 ENSMUST00000233641 ENSMUSP00000156655 TRANSLATION nonsense_mediated_decay start - - 96.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000044172 Ptx4 ENSMUST00000233502 ENSMUSP00000156881 TRANSLATION protein_coding - - - 124.0 0.0 0.0 0.0 0.0 0.0 4,-2 0.0016 - 0.0 MINOR ENSMUSG00000041062 Mslnl ENSMUST00000047098 ENSMUSP00000049020 TRANSLATION protein_coding - CCDS28525.1 1 685.0 0.0 2.198 0.1 226.3 0.0 0,-4 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000024392 Bag6 ENSMUST00000173952 ENSMUSP00000134717 TRANSLATION protein_coding stop - 2 253.0 0.0 3.24 0.0 62.9 0.0 2,-3 0.0011 5 -2.0 MINOR ENSMUSG00000024392 Bag6 ENSMUST00000172882 - NO_TRANSLATION retained_intron ENSMUSG00000024392 Bag6 ENSMUST00000025250 ENSMUSP00000025250 TRANSLATION protein_coding - CCDS28688.1 5 1154.0 0.0 6.12 0.0 207.5 0.0 -4,-5 0.6232 22 8.0 ALTERNATIVE:2 ENSMUSG00000024392 Bag6 ENSMUST00000173550 ENSMUSP00000134628 TRANSLATION protein_coding - CCDS57072.1 1 1122.0 0.0 5.12 0.0 207.5 0.0 -4,-5 0.4289 21 6.002 MINOR ENSMUSG00000024392 Bag6 ENSMUST00000174281 ENSMUSP00000134425 TRANSLATION protein_coding stop - 1 1107.0 0.0 4.52 0.0 207.5 0.0 -4,-5 0.2011 19 -2.0 MINOR ENSMUSG00000024392 Bag6 ENSMUST00000172889 - NO_TRANSLATION retained_intron ENSMUSG00000024392 Bag6 ENSMUST00000174613 - NO_TRANSLATION retained_intron ENSMUSG00000024392 Bag6 ENSMUST00000173535 ENSMUSP00000133822 TRANSLATION protein_coding stop - 1 563.0 0.0 3.24 0.0 207.5 0.0 2,-3 0.0695 9 -2.0 MINOR ENSMUSG00000024392 Bag6 ENSMUST00000166426 ENSMUSP00000129324 TRANSLATION protein_coding - CCDS57073.1 1 1136.0 0.0 6.12 0.0 207.5 0.0 -4,-5 1.0 23 8.0 PRINCIPAL:2 ENSMUSG00000024392 Bag6 ENSMUST00000174478 ENSMUSP00000138117 TRANSLATION protein_coding stop - 2 115.0 0.0 3.0 0.0 62.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024392 Bag6 ENSMUST00000174797 - NO_TRANSLATION retained_intron ENSMUSG00000024392 Bag6 ENSMUST00000172925 - NO_TRANSLATION retained_intron ENSMUSG00000024392 Bag6 ENSMUST00000172571 ENSMUSP00000134175 TRANSLATION protein_coding - - 5 1082.0 0.0 5.12 0.0 207.5 0.0 -4,-5 0.1733 21 6.002 MINOR ENSMUSG00000024392 Bag6 ENSMUST00000173351 - NO_TRANSLATION retained_intron ENSMUSG00000024392 Bag6 ENSMUST00000173491 ENSMUSP00000134279 TRANSLATION protein_coding stop - 5 209.0 0.0 3.24 0.0 62.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024392 Bag6 ENSMUST00000172993 ENSMUSP00000138467 TRANSLATION protein_coding start - 2 120.0 0.0 1.55 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000114245 Percc1 ENSMUST00000224277 ENSMUSP00000153456 TRANSLATION protein_coding - - - 273.0 0.0 0.0 1.0 0.0 0.0 -4,-7 0.6177 - 0.0 PRINCIPAL:1 ENSMUSG00000037246 H2-M10.5 ENSMUST00000041531 ENSMUSP00000047766 TRANSLATION protein_coding - CCDS28725.1 1 330.0 0.0 4.0 0.0 202.3 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024134 Six2 ENSMUST00000163568 ENSMUSP00000125871 TRANSLATION protein_coding - CCDS29007.1 1 296.0 2.0 1.0 32.6 219.2 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000021545 1700067P10Rik ENSMUST00000233043 ENSMUSP00000156701 TRANSLATION protein_coding - - - 183.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.5824 - 0.0 PRINCIPAL:1 ENSMUSG00000021545 1700067P10Rik ENSMUST00000022028 ENSMUSP00000022028 TRANSLATION protein_coding - - 1 183.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.5824 - 0.0 PRINCIPAL:1 ENSMUSG00000096278 Dcpp2 ENSMUST00000234110 ENSMUSP00000157331 TRANSLATION protein_coding - CCDS37479.1 - 171.0 0.0 2.0 0.0 0.0 0.0 4,-1 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000096278 Dcpp2 ENSMUST00000168272 ENSMUSP00000126379 TRANSLATION protein_coding - CCDS37479.1 1 171.0 0.0 2.0 0.0 0.0 0.0 4,-1 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000096278 Dcpp2 ENSMUST00000088598 ENSMUSP00000085966 TRANSLATION protein_coding - CCDS37479.1 1 171.0 0.0 2.0 0.0 0.0 0.0 4,-1 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000043827 Or2i1 ENSMUST00000208047 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043827 Or2i1 ENSMUST00000055324 ENSMUSP00000055232 TRANSLATION protein_coding - CCDS28738.1 - 386.0 0.0 1.0 0.0 133.5 4.0 -4,-5 0.3061 - 12.0 MINOR ENSMUSG00000043827 Or2i1 ENSMUST00000222190 ENSMUSP00000153315 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 6.5 133.5 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000036492 Rnf39 ENSMUST00000040498 ENSMUSP00000037860 TRANSLATION protein_coding - CCDS50103.1 1 352.0 8.0 1.898 7.0 94.8 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000036492 Rnf39 ENSMUST00000173072 ENSMUSP00000133710 TRANSLATION protein_coding - - 2 178.0 8.0 0.798 0.0 32.1 0.0 -4,-5 0.0 - 10.554 MINOR ENSMUSG00000036492 Rnf39 ENSMUST00000174669 ENSMUSP00000134113 TRANSLATION protein_coding stop - 3 114.0 0.0 0.8 0.0 62.7 0.0 -4,-6 0.0009 2 -2.0 MINOR ENSMUSG00000007036 Abhd16a ENSMUST00000173846 ENSMUSP00000133505 TRANSLATION nonsense_mediated_decay - - 5 65.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000007036 Abhd16a ENSMUST00000173190 - NO_TRANSLATION retained_intron ENSMUSG00000007036 Abhd16a ENSMUST00000007251 ENSMUSP00000007251 TRANSLATION protein_coding - CCDS28681.1 1 558.0 0.0 1.4815 14.5 33.0 0.0 -4,-2 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000007036 Abhd16a ENSMUST00000173579 - NO_TRANSLATION retained_intron ENSMUSG00000007036 Abhd16a ENSMUST00000173134 - NO_TRANSLATION retained_intron ENSMUSG00000007036 Abhd16a ENSMUST00000172584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007036 Abhd16a ENSMUST00000173247 - NO_TRANSLATION retained_intron ENSMUSG00000079710 Dynlt2a2 ENSMUST00000179539 ENSMUSP00000137218 TRANSLATION protein_coding - CCDS49961.1 1 191.0 0.0 2.4 6.3 74.8 0.0 -4,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000079710 Dynlt2a2 ENSMUST00000232299 ENSMUSP00000156126 TRANSLATION protein_coding - - - 49.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000043740 B430306N03Rik ENSMUST00000124205 - NO_TRANSLATION retained_intron ENSMUSG00000043740 B430306N03Rik ENSMUST00000129825 ENSMUSP00000122378 TRANSLATION nonsense_mediated_decay - - 1 173.0 0.0 1.12 0.0 55.8 0.0 4,-1 0.1435 - -2.0 MINOR ENSMUSG00000043740 B430306N03Rik ENSMUST00000049614 ENSMUSP00000054890 TRANSLATION protein_coding - CCDS28864.1 1 289.0 0.0 1.1 0.0 55.8 0.0 4,-1 1.0 - 11.892 PRINCIPAL:1 ENSMUSG00000094921 Vmn2r112 ENSMUST00000234882 ENSMUSP00000157078 TRANSLATION protein_coding - - - 841.0 4.0 2.83 0.0 382.6 7.0 2,-3 0.2312 - 11.502 ALTERNATIVE:2 ENSMUSG00000094921 Vmn2r112 ENSMUST00000097381 ENSMUSP00000094994 TRANSLATION protein_coding - CCDS50003.1 1 857.0 4.0 3.08 0.1 382.6 7.0 2,-3 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000094921 Vmn2r112 ENSMUST00000234826 ENSMUSP00000157166 TRANSLATION nonsense_mediated_decay - - - 465.0 0.0 1.065 0.0 117.9 0.0 2,-3 0.0012 - -2.0 MINOR ENSMUSG00000094921 Vmn2r112 ENSMUST00000234464 - NO_TRANSLATION retained_intron ENSMUSG00000073396 Esp1 ENSMUST00000161110 ENSMUSP00000123886 TRANSLATION protein_coding - CCDS28785.1 5 102.0 0.0 1.0 0.0 123.3 0.0 3,-2 0.5506 - 8.0 ALTERNATIVE:2 ENSMUSG00000073396 Esp1 ENSMUST00000233513 ENSMUSP00000156893 TRANSLATION protein_coding - - - 120.0 0.0 1.0 0.0 123.3 0.0 -3,-6 0.7773 - 8.0 PRINCIPAL:4 ENSMUSG00000033597 Caskin1 ENSMUST00000024958 ENSMUSP00000024958 TRANSLATION protein_coding - CCDS50013.1 5 1431.0 0.0 11.1 0.4 566.1 0.0 -4,-5 1.0 33 12.0 PRINCIPAL:1 ENSMUSG00000033597 Caskin1 ENSMUST00000235032 - NO_TRANSLATION retained_intron ENSMUSG00000033597 Caskin1 ENSMUST00000234171 - NO_TRANSLATION retained_intron ENSMUSG00000033597 Caskin1 ENSMUST00000234030 - NO_TRANSLATION retained_intron ENSMUSG00000033597 Caskin1 ENSMUST00000234717 ENSMUSP00000157196 TRANSLATION protein_coding - - - 1360.0 0.0 9.1 0.4 510.0 0.0 -4,-5 0.1114 33 4.632 MINOR ENSMUSG00000062591 Tubb4a ENSMUST00000071135 ENSMUSP00000071135 TRANSLATION protein_coding - CCDS28925.1 1 444.0 16.0 3.5 15.4 371.8 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000024073 Birc6 ENSMUST00000182157 - NO_TRANSLATION retained_intron ENSMUSG00000024073 Birc6 ENSMUST00000182108 - NO_TRANSLATION retained_intron ENSMUSG00000024073 Birc6 ENSMUST00000182133 ENSMUSP00000138693 TRANSLATION protein_coding - - 5 4867.0 4.0 6.88 0.0 395.2 0.0 -4,-7 0.6845 75 12.0 ALTERNATIVE:2 ENSMUSG00000024073 Birc6 ENSMUST00000182944 ENSMUSP00000138732 TRANSLATION protein_coding - - 5 4869.0 4.0 6.88 2.6 395.2 0.0 -4,-7 0.9762 75 13.0 ALTERNATIVE:2 ENSMUSG00000024073 Birc6 ENSMUST00000182164 - NO_TRANSLATION retained_intron ENSMUSG00000024073 Birc6 ENSMUST00000182845 ENSMUSP00000138717 TRANSLATION protein_coding start/stop - 1 437.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0025 3 -2.0 MINOR ENSMUSG00000024073 Birc6 ENSMUST00000182382 - NO_TRANSLATION retained_intron ENSMUSG00000024073 Birc6 ENSMUST00000234521 ENSMUSP00000157257 TRANSLATION protein_coding start/stop - - 255.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0034 3 -2.0 MINOR ENSMUSG00000024073 Birc6 ENSMUST00000182257 - NO_TRANSLATION retained_intron ENSMUSG00000024073 Birc6 ENSMUST00000183224 ENSMUSP00000138270 TRANSLATION protein_coding - - 5 4853.0 4.0 6.88 0.0 395.2 0.0 -2,-3 0.4693 75 12.0 ALTERNATIVE:2 ENSMUSG00000024073 Birc6 ENSMUST00000180037 ENSMUSP00000136329 TRANSLATION protein_coding - CCDS37693.2 1 4873.0 4.0 6.88 1.5 395.2 0.0 -4,-7 1.0 75 12.312 PRINCIPAL:4 ENSMUSG00000024073 Birc6 ENSMUST00000182804 - NO_TRANSLATION retained_intron ENSMUSG00000024073 Birc6 ENSMUST00000183249 ENSMUSP00000138521 TRANSLATION nonsense_mediated_decay start - 5 597.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0043 11 -2.0 MINOR ENSMUSG00000024073 Birc6 ENSMUST00000182631 - NO_TRANSLATION retained_intron ENSMUSG00000024073 Birc6 ENSMUST00000183010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024073 Birc6 ENSMUST00000182597 ENSMUSP00000138333 TRANSLATION protein_coding - - 1 4882.0 4.0 6.88 1.4 395.2 0.0 -4,-7 0.6059 75 12.25 ALTERNATIVE:2 ENSMUSG00000024073 Birc6 ENSMUST00000182278 ENSMUSP00000138343 TRANSLATION protein_coding start/stop - 5 343.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0014 1 -2.0 MINOR ENSMUSG00000024073 Birc6 ENSMUST00000182817 ENSMUSP00000138349 TRANSLATION nonsense_mediated_decay start - 3 95.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0009 1 -2.0 MINOR ENSMUSG00000024073 Birc6 ENSMUST00000177957 ENSMUSP00000137114 TRANSLATION protein_coding start/stop - 1 973.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0115 8 -2.0 MINOR ENSMUSG00000024073 Birc6 ENSMUST00000182147 - NO_TRANSLATION retained_intron ENSMUSG00000024073 Birc6 ENSMUST00000182323 ENSMUSP00000138672 TRANSLATION protein_coding start - 5 112.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024073 Birc6 ENSMUST00000182221 - NO_TRANSLATION retained_intron ENSMUSG00000045202 Or2g1 ENSMUST00000214770 ENSMUSP00000150780 TRANSLATION protein_coding - CCDS28765.1 5 309.0 0.0 1.0 2.9 150.4 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000045202 Or2g1 ENSMUST00000216051 ENSMUSP00000149802 TRANSLATION protein_coding - CCDS28765.1 5 309.0 0.0 1.0 2.9 150.4 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000045202 Or2g1 ENSMUST00000054748 ENSMUSP00000058678 TRANSLATION protein_coding - CCDS28765.1 - 309.0 0.0 1.0 2.9 150.4 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000023806 Rsph3b ENSMUST00000231794 ENSMUSP00000156248 TRANSLATION protein_coding - - - 534.0 0.0 5.15 0.0 424.7 0.0 -4,-2 0.1417 - 8.0 ALTERNATIVE:2 ENSMUSG00000023806 Rsph3b ENSMUST00000232602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023806 Rsph3b ENSMUST00000024572 ENSMUSP00000024572 TRANSLATION protein_coding - CCDS57044.1 1 389.0 0.0 5.15 0.0 424.7 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000117284 Gm7072 ENSMUST00000233465 ENSMUSP00000156489 TRANSLATION protein_coding - - - 689.0 72.0 1.0 0.0 446.0 0.0 -4,-5 0.8504 - 18.0 PRINCIPAL:1 ENSMUSG00000039269 2300002M23Rik ENSMUST00000044326 ENSMUSP00000038043 TRANSLATION protein_coding - CCDS50092.1 1 349.0 0.0 0.0 0.0 185.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000039269 2300002M23Rik ENSMUST00000174246 - NO_TRANSLATION retained_intron ENSMUSG00000062078 Qki ENSMUST00000233645 ENSMUSP00000156511 TRANSLATION protein_coding - CCDS49947.1 - 341.0 3.0 5.5 26.6 192.7 0.0 -4,-5 1.0 14 19.0 PRINCIPAL:1 ENSMUSG00000062078 Qki ENSMUST00000232721 - NO_TRANSLATION retained_intron ENSMUSG00000062078 Qki ENSMUST00000233828 ENSMUSP00000156665 TRANSLATION protein_coding - - - 319.0 3.0 5.5 19.1 120.3 0.0 -4,-5 0.5014 14 13.484 MINOR ENSMUSG00000062078 Qki ENSMUST00000233684 ENSMUSP00000156519 TRANSLATION protein_coding start/stop - - 217.0 0.0 3.0 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000062078 Qki ENSMUST00000097414 ENSMUSP00000095025 TRANSLATION nonsense_mediated_decay - - 1 319.0 3.0 5.5 19.1 120.3 0.0 -4,-5 0.5014 14 -2.0 MINOR ENSMUSG00000062078 Qki ENSMUST00000042296 ENSMUSP00000046740 TRANSLATION protein_coding - CCDS28387.1 1 325.0 3.0 5.5 6.9 120.3 0.0 -4,-5 0.344 14 11.576 MINOR ENSMUSG00000023919 Cenpq ENSMUST00000130890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023919 Cenpq ENSMUST00000087114 ENSMUSP00000084353 TRANSLATION protein_coding - - 1 267.0 0.0 0.0 9.4 60.9 0.0 -4,-7 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000054951 9130008F23Rik ENSMUST00000233122 ENSMUSP00000156475 TRANSLATION protein_coding - CCDS50110.1 - 181.0 0.0 0.2 0.1 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054951 9130008F23Rik ENSMUST00000233871 ENSMUSP00000156735 TRANSLATION nonsense_mediated_decay - CCDS50110.1 - 181.0 0.0 0.2 0.1 0.0 0.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000054951 9130008F23Rik ENSMUST00000068258 ENSMUSP00000069779 TRANSLATION protein_coding - CCDS50110.1 1 181.0 0.0 0.2 0.1 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000057899 Adgrf2 ENSMUST00000239223 ENSMUSP00000159259 TRANSLATION protein_coding - - - 673.0 0.0 0.675 0.3 129.6 7.0 0,-4 0.8642 - 12.0 PRINCIPAL:1 ENSMUSG00000057899 Adgrf2 ENSMUST00000113614 ENSMUSP00000109244 TRANSLATION protein_coding - CCDS28792.2 1 644.0 0.0 0.12 0.0 120.5 7.0 0,-4 0.2699 - 6.522 MINOR ENSMUSG00000046070 Igfals ENSMUST00000234675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046070 Igfals ENSMUST00000234188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046070 Igfals ENSMUST00000234802 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046070 Igfals ENSMUST00000050714 ENSMUSP00000060169 TRANSLATION protein_coding - CCDS37497.1 1 603.0 0.0 0.4 6.4 245.6 0.0 2,-2 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000046070 Igfals ENSMUST00000234754 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046070 Igfals ENSMUST00000234862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073433 Arhgdig ENSMUST00000121959 ENSMUSP00000113186 TRANSLATION protein_coding - - 3 219.0 0.0 3.8 18.1 172.1 0.0 -4,-6 0.7268 - 14.02 MINOR ENSMUSG00000073433 Arhgdig ENSMUST00000025019 ENSMUSP00000025019 TRANSLATION protein_coding - CCDS28548.1 1 225.0 0.0 4.13 18.1 194.1 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000073433 Arhgdig ENSMUST00000176847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073433 Arhgdig ENSMUST00000155556 - NO_TRANSLATION retained_intron ENSMUSG00000023886 Smoc2 ENSMUST00000232923 ENSMUSP00000156632 TRANSLATION protein_coding - - - 89.0 0.0 0.6 0.0 41.0 0.0 3,-1 0.0 2 1.238 MINOR ENSMUSG00000023886 Smoc2 ENSMUST00000232936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023886 Smoc2 ENSMUST00000233686 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023886 Smoc2 ENSMUST00000024660 ENSMUSP00000024660 TRANSLATION protein_coding - CCDS37442.1 1 447.0 8.0 2.915 6.9 309.1 0.0 3,-1 1.0 5 15.67 PRINCIPAL:4 ENSMUSG00000023886 Smoc2 ENSMUST00000233526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023886 Smoc2 ENSMUST00000233344 ENSMUSP00000156572 TRANSLATION protein_coding - - - 458.0 8.0 3.08 6.9 303.3 0.0 3,-1 0.779 5 15.4 ALTERNATIVE:1 ENSMUSG00000023886 Smoc2 ENSMUST00000233540 - NO_TRANSLATION retained_intron ENSMUSG00000050138 Kcnk12 ENSMUST00000055221 ENSMUSP00000053595 TRANSLATION protein_coding - CCDS29020.1 1 430.0 0.0 0.7 6.8 112.4 0.0 -4,-1 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000023827 Agpat4 ENSMUST00000170858 ENSMUSP00000127417 TRANSLATION nonsense_mediated_decay - - 5 118.0 0.0 1.0 0.0 0.0 3.0 -2,-5 0.0017 1 -2.0 MINOR ENSMUSG00000023827 Agpat4 ENSMUST00000172259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023827 Agpat4 ENSMUST00000167905 - NO_TRANSLATION retained_intron ENSMUSG00000023827 Agpat4 ENSMUST00000024594 ENSMUSP00000024594 TRANSLATION protein_coding - CCDS28389.1 1 378.0 0.0 8.0 22.8 146.9 5.0 -2,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000023827 Agpat4 ENSMUST00000167792 ENSMUSP00000127477 TRANSLATION protein_coding stop - 5 166.0 0.0 3.0 0.0 44.8 3.0 -2,-5 0.0 2 -2.0 MINOR ENSMUSG00000023827 Agpat4 ENSMUST00000164143 ENSMUSP00000128085 TRANSLATION protein_coding stop - 5 194.0 0.0 3.5 0.0 54.0 3.0 -2,-5 0.0 2 -2.0 MINOR ENSMUSG00000047507 Baiap3 ENSMUST00000169109 ENSMUSP00000129854 TRANSLATION protein_coding - - 5 1127.0 13.0 4.561 1.0 131.6 0.0 -,- 0.2769 9 17.298 MINOR ENSMUSG00000047507 Baiap3 ENSMUST00000249677 - NO_TRANSLATION retained_intron ENSMUSG00000047507 Baiap3 ENSMUST00000249679 - NO_TRANSLATION retained_intron ENSMUSG00000047507 Baiap3 ENSMUST00000249675 - NO_TRANSLATION retained_intron ENSMUSG00000047507 Baiap3 ENSMUST00000182696 ENSMUSP00000138454 TRANSLATION protein_coding start - 5 89.0 0.0 0.64 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000047507 Baiap3 ENSMUST00000182056 ENSMUSP00000138188 TRANSLATION protein_coding - CCDS50033.1 1 1150.0 13.0 4.561 6.0 131.6 0.0 -,- 1.0 9 19.298 PRINCIPAL:1 ENSMUSG00000047507 Baiap3 ENSMUST00000249678 ENSMUSP00000159855 TRANSLATION protein_coding - - - 653.0 7.0 3.536 0.0 85.1 0.0 -,- 0.0006 4 8.46 MINOR ENSMUSG00000047507 Baiap3 ENSMUST00000182126 - NO_TRANSLATION retained_intron ENSMUSG00000047507 Baiap3 ENSMUST00000249676 - NO_TRANSLATION retained_intron ENSMUSG00000047507 Baiap3 ENSMUST00000249674 - NO_TRANSLATION retained_intron ENSMUSG00000047507 Baiap3 ENSMUST00000182922 - NO_TRANSLATION retained_intron ENSMUSG00000047507 Baiap3 ENSMUST00000182825 ENSMUSP00000138254 TRANSLATION protein_coding - - 5 1114.0 13.0 4.911 1.0 131.6 0.0 -,- 0.3506 9 18.0 MINOR ENSMUSG00000047507 Baiap3 ENSMUST00000182978 - NO_TRANSLATION retained_intron ENSMUSG00000047507 Baiap3 ENSMUST00000182903 - NO_TRANSLATION retained_intron ENSMUSG00000047507 Baiap3 ENSMUST00000182435 ENSMUSP00000138796 TRANSLATION protein_coding - - 5 1122.0 13.0 4.561 1.0 131.6 0.0 -,- 0.2728 9 17.298 MINOR ENSMUSG00000023904 Hcfc1r1 ENSMUST00000024697 ENSMUSP00000024697 TRANSLATION protein_coding - CCDS28455.1 1 120.0 0.0 0.0 8.2 184.5 0.0 -4,-2 1.0 - 2.667 PRINCIPAL:4 ENSMUSG00000023904 Hcfc1r1 ENSMUST00000180140 ENSMUSP00000137336 TRANSLATION protein_coding - CCDS28455.1 2 120.0 0.0 0.0 8.2 184.5 0.0 -4,-2 1.0 - 2.667 PRINCIPAL:4 ENSMUSG00000023904 Hcfc1r1 ENSMUST00000179928 ENSMUSP00000137205 TRANSLATION protein_coding - - 3 116.0 0.0 0.0 9.1 173.8 0.0 -4,-7 0.9099 - 3.0 ALTERNATIVE:1 ENSMUSG00000093593 Gm20683 ENSMUST00000176751 ENSMUSP00000135410 TRANSLATION nonsense_mediated_decay,RT start - 5 410.0 19.0 8.55 0.0 199.8 0.0 -4,-5 0.7683 - -2.0 PRINCIPAL:1 ENSMUSG00000055240 Zfp101 ENSMUST00000174417 ENSMUSP00000134459 TRANSLATION protein_coding stop - 3 129.0 3.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055240 Zfp101 ENSMUST00000173151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055240 Zfp101 ENSMUST00000183047 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055240 Zfp101 ENSMUST00000167107 ENSMUSP00000132508 TRANSLATION protein_coding - CCDS37565.1 1 612.0 60.0 2.4 0.1 317.8 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000055240 Zfp101 ENSMUST00000174512 ENSMUSP00000133873 TRANSLATION protein_coding - - 1 65.0 0.0 1.75 0.0 79.0 0.0 -4,-5 0.0 - 4.374 MINOR ENSMUSG00000062629 Or14j3 ENSMUST00000216249 ENSMUSP00000149735 TRANSLATION protein_coding - CCDS28757.1 5 312.0 0.0 1.0 3.4 147.2 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000062629 Or14j3 ENSMUST00000076914 ENSMUSP00000076181 TRANSLATION protein_coding - CCDS28757.1 - 312.0 0.0 1.0 3.4 147.2 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000062629 Or14j3 ENSMUST00000214871 ENSMUSP00000151201 TRANSLATION protein_coding - CCDS28757.1 5 312.0 0.0 1.0 3.4 147.2 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000067629 Syngap1 ENSMUST00000228963 ENSMUSP00000154838 TRANSLATION protein_coding - - - 1246.0 0.0 7.275 0.1 719.8 0.0 -4,-7 0.1736 36 10.584 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000193200 ENSMUSP00000141245 TRANSLATION nonsense_mediated_decay start - 5 1281.0 0.0 7.275 0.0 719.8 0.0 -4,-7 0.1613 36 -2.0 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000202208 ENSMUSP00000144414 TRANSLATION nonsense_mediated_decay start - 5 124.0 0.0 1.875 0.0 182.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000201349 ENSMUSP00000144666 TRANSLATION protein_coding start - 5 1282.0 0.0 6.775 2.9 656.8 0.0 -4,-2 0.3096 37 -2.0 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000200799 - NO_TRANSLATION retained_intron ENSMUSG00000067629 Syngap1 ENSMUST00000081285 ENSMUSP00000080038 TRANSLATION protein_coding - - 5 1281.0 0.0 7.275 3.1 743.4 0.0 -4,-7 0.5398 37 12.712 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000177932 ENSMUSP00000137587 TRANSLATION protein_coding - - 5 1308.0 0.0 7.275 0.1 722.5 0.0 -4,-2 0.2183 38 10.746 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000202939 ENSMUSP00000144403 TRANSLATION nonsense_mediated_decay start - 5 65.0 0.0 1.5 0.0 29.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000229490 ENSMUSP00000155085 TRANSLATION protein_coding - - - 1305.0 0.0 7.275 0.1 719.8 0.0 -4,-2 0.2076 38 10.584 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000194598 ENSMUSP00000141686 TRANSLATION protein_coding - CCDS59625.1 5 1340.0 0.0 7.275 6.9 743.4 0.0 -4,-2 1.0 39 14.0 PRINCIPAL:1 ENSMUSG00000067629 Syngap1 ENSMUST00000231853 ENSMUSP00000156340 TRANSLATION protein_coding - - - 1167.0 0.0 7.275 1.1 743.4 0.0 -4,-5 0.3393 36 12.034 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000201186 ENSMUSP00000144410 TRANSLATION nonsense_mediated_decay start - 5 214.0 0.0 1.375 0.0 220.0 0.0 -4,-2 0.0 8 -2.0 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000202049 ENSMUSP00000144509 TRANSLATION nonsense_mediated_decay start - 5 117.0 0.0 1.375 0.0 127.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000067629 Syngap1 ENSMUST00000201702 ENSMUSP00000144248 TRANSLATION protein_coding - - 5 1289.0 0.0 7.275 1.0 721.9 0.0 -4,-2 0.2396 36 10.71 MINOR ENSMUSG00000090315 Vmn2r104 ENSMUST00000233932 - NO_TRANSLATION retained_intron ENSMUSG00000090315 Vmn2r104 ENSMUST00000233647 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090315 Vmn2r104 ENSMUST00000168050 ENSMUSP00000129895 TRANSLATION protein_coding - CCDS49981.1 5 860.0 4.0 2.45 0.1 389.7 0.0 0,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000079557 Marchf2 ENSMUST00000172934 ENSMUSP00000134026 TRANSLATION nonsense_mediated_decay - - 1 242.0 8.0 2.75 0.0 58.2 4.0 -4,-5 0.0763 2 -2.0 MINOR ENSMUSG00000079557 Marchf2 ENSMUST00000173329 ENSMUSP00000133825 TRANSLATION protein_coding - - 2 197.0 8.0 2.75 0.0 58.2 4.0 -4,-5 0.0176 2 15.588 MINOR ENSMUSG00000079557 Marchf2 ENSMUST00000167611 ENSMUSP00000127601 TRANSLATION nonsense_mediated_decay - CCDS28627.1 1 287.0 8.0 3.955 0.0 58.2 5.0 -4,-5 0.1199 - -2.0 MINOR ENSMUSG00000079557 Marchf2 ENSMUST00000186022 ENSMUSP00000139724 TRANSLATION protein_coding - CCDS28627.1 1 287.0 8.0 3.955 0.0 58.2 5.0 -4,-5 0.1199 2 18.0 MINOR ENSMUSG00000079557 Marchf2 ENSMUST00000173392 ENSMUSP00000134255 TRANSLATION protein_coding stop - 3 82.0 2.0 0.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000079557 Marchf2 ENSMUST00000173454 ENSMUSP00000133940 TRANSLATION protein_coding start - 3 177.0 8.0 3.625 0.0 58.2 4.0 -4,-5 0.0179 - -2.0 MINOR ENSMUSG00000079557 Marchf2 ENSMUST00000172767 ENSMUSP00000134220 TRANSLATION protein_coding - CCDS57064.1 1 246.0 8.0 3.955 26.5 58.2 5.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000079557 Marchf2 ENSMUST00000066121 ENSMUSP00000065225 TRANSLATION protein_coding - CCDS28627.1 1 287.0 8.0 3.955 0.0 58.2 5.0 -4,-5 0.1199 2 18.0 MINOR ENSMUSG00000079557 Marchf2 ENSMUST00000173015 ENSMUSP00000133802 TRANSLATION protein_coding - - 3 232.0 8.0 2.75 0.1 58.2 4.0 -4,-5 0.0284 2 15.588 MINOR ENSMUSG00000079557 Marchf2 ENSMUST00000174040 ENSMUSP00000134437 TRANSLATION protein_coding stop - 2 217.0 8.0 2.75 0.0 58.2 4.0 -4,-7 0.0239 2 -2.0 MINOR ENSMUSG00000071266 Zfp946 ENSMUST00000167740 ENSMUSP00000132940 TRANSLATION protein_coding - CCDS50001.1 5 523.0 44.0 1.0 0.1 292.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000071266 Zfp946 ENSMUST00000141831 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071266 Zfp946 ENSMUST00000088763 ENSMUSP00000086141 TRANSLATION protein_coding - CCDS50001.1 1 523.0 44.0 1.0 0.1 292.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000071266 Zfp946 ENSMUST00000120222 ENSMUSP00000113244 TRANSLATION protein_coding - CCDS50001.1 1 523.0 44.0 1.0 0.1 292.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000090894 Or5v1 ENSMUST00000216472 ENSMUSP00000149213 TRANSLATION protein_coding - CCDS28754.1 5 317.0 0.0 1.0 6.8 179.3 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000090894 Or5v1 ENSMUST00000168318 ENSMUSP00000131089 TRANSLATION protein_coding - CCDS28754.1 2 317.0 0.0 1.0 6.8 179.3 5.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000023949 Tcte1 ENSMUST00000113547 ENSMUSP00000109175 TRANSLATION protein_coding - CCDS37629.1 5 498.0 0.0 1.1 1.5 78.9 0.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000023949 Tcte1 ENSMUST00000233588 ENSMUSP00000156920 TRANSLATION protein_coding - CCDS37629.1 - 498.0 0.0 1.1 1.5 78.9 0.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000040771 Oard1 ENSMUST00000167180 ENSMUSP00000130802 TRANSLATION protein_coding - CCDS37647.1 1 152.0 0.0 4.0 18.7 28.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000040771 Oard1 ENSMUST00000233426 ENSMUSP00000156587 TRANSLATION protein_coding - - - 74.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0003 3 1.002 MINOR ENSMUSG00000040771 Oard1 ENSMUST00000046651 ENSMUSP00000039280 TRANSLATION protein_coding - CCDS37647.1 1 152.0 0.0 4.0 18.7 28.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000036322 H2-Ea ENSMUST00000134042 ENSMUSP00000158275 TRANSLATION protein_coding_LoF start - - 228.0 0.0 2.8 0.0 192.5 0.0 -4,-5 0.7535 - -2.0 PRINCIPAL:1 ENSMUSG00000007041 Clic1 ENSMUST00000007257 ENSMUSP00000007257 TRANSLATION protein_coding - CCDS28675.1 1 241.0 11.0 5.5 25.8 70.3 0.0 -4,-6 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000007041 Clic1 ENSMUST00000172599 - NO_TRANSLATION retained_intron ENSMUSG00000040140 Tdrd6 ENSMUST00000045717 ENSMUSP00000035338 TRANSLATION protein_coding - CCDS50115.1 1 2135.0 14.0 0.4 0.0 480.8 0.0 -4,-7 0.9979 11 14.0 ALTERNATIVE:2 ENSMUSG00000040140 Tdrd6 ENSMUST00000168073 ENSMUSP00000131277 TRANSLATION protein_coding - CCDS28797.1 1 2134.0 14.0 0.4 0.0 480.8 0.0 -4,-7 1.0 11 14.0 PRINCIPAL:4 ENSMUSG00000040140 Tdrd6 ENSMUST00000233077 ENSMUSP00000156656 TRANSLATION protein_coding - - - 1941.0 14.0 0.0 0.0 403.4 0.0 -4,-7 0.1174 10 7.6 MINOR ENSMUSG00000040140 Tdrd6 ENSMUST00000162232 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048731 Ggnbp1 ENSMUST00000122106 ENSMUSP00000113880 TRANSLATION protein_coding - CCDS57061.1 5 262.0 0.0 2.0 0.0 150.8 0.0 -4,-2 0.3371 - 8.0 ALTERNATIVE:2 ENSMUSG00000048731 Ggnbp1 ENSMUST00000151920 - NO_TRANSLATION retained_intron ENSMUSG00000048731 Ggnbp1 ENSMUST00000142141 ENSMUSP00000157820 TRANSLATION protein_coding - - 2 31.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000048731 Ggnbp1 ENSMUST00000236222 ENSMUSP00000157530 TRANSLATION protein_coding - - - 137.0 0.0 2.0 0.0 150.8 0.0 -4,-6 0.0273 - 8.0 ALTERNATIVE:2 ENSMUSG00000048731 Ggnbp1 ENSMUST00000053683 ENSMUSP00000051800 TRANSLATION protein_coding - CCDS28559.1 1 370.0 0.0 2.0 0.1 150.8 0.0 -4,0 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000048731 Ggnbp1 ENSMUST00000154731 ENSMUSP00000157923 TRANSLATION protein_coding - - 2 137.0 0.0 2.0 0.0 150.8 0.0 -4,-6 0.0273 - 8.0 ALTERNATIVE:2 ENSMUSG00000048731 Ggnbp1 ENSMUST00000235268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048731 Ggnbp1 ENSMUST00000235543 ENSMUSP00000158352 TRANSLATION protein_coding start - - 134.0 0.0 1.5 0.0 119.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048731 Ggnbp1 ENSMUST00000236076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004865 Srpk1 ENSMUST00000114767 ENSMUSP00000110415 TRANSLATION protein_coding - - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000004865 Srpk1 ENSMUST00000145023 - NO_TRANSLATION retained_intron ENSMUSG00000004865 Srpk1 ENSMUST00000233353 ENSMUSP00000156908 TRANSLATION protein_coding start/stop - - 345.0 13.0 3.415 0.0 34.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000004865 Srpk1 ENSMUST00000233794 ENSMUSP00000156541 TRANSLATION protein_coding stop - - 146.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004865 Srpk1 ENSMUST00000126683 - NO_TRANSLATION retained_intron ENSMUSG00000004865 Srpk1 ENSMUST00000130643 ENSMUSP00000116259 TRANSLATION protein_coding - CCDS37531.1 1 648.0 20.0 10.165 4.4 146.4 0.0 -4,-5 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000004865 Srpk1 ENSMUST00000136504 - NO_TRANSLATION retained_intron ENSMUSG00000004865 Srpk1 ENSMUST00000232751 ENSMUSP00000156854 TRANSLATION protein_coding - - - 307.0 19.0 5.25 0.0 79.5 0.0 -4,-5 0.001 4 7.32 MINOR ENSMUSG00000004865 Srpk1 ENSMUST00000232882 - NO_TRANSLATION retained_intron ENSMUSG00000004865 Srpk1 ENSMUST00000233440 - NO_TRANSLATION retained_intron ENSMUSG00000004865 Srpk1 ENSMUST00000233129 ENSMUSP00000156721 TRANSLATION protein_coding - - - 280.0 19.0 5.415 0.0 80.8 0.0 -4,-5 0.0 4 7.398 MINOR ENSMUSG00000004865 Srpk1 ENSMUST00000145730 - NO_TRANSLATION retained_intron ENSMUSG00000004865 Srpk1 ENSMUST00000004987 ENSMUSP00000004987 TRANSLATION nonsense_mediated_decay start - 1 223.0 19.0 5.065 0.0 80.8 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000063888 Rpl7l1 ENSMUST00000233192 ENSMUSP00000156664 TRANSLATION protein_coding - CCDS28842.1 - 246.0 0.0 4.0 22.8 113.5 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000063888 Rpl7l1 ENSMUST00000233919 - NO_TRANSLATION retained_intron ENSMUSG00000063888 Rpl7l1 ENSMUST00000233349 ENSMUSP00000156785 TRANSLATION protein_coding stop - - 83.0 0.0 2.0 0.0 48.1 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000063888 Rpl7l1 ENSMUST00000078286 ENSMUSP00000092888 TRANSLATION protein_coding - CCDS28842.1 1 246.0 0.0 4.0 22.8 113.5 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000096477 Or2h2c ENSMUST00000168659 ENSMUSP00000128393 TRANSLATION protein_coding - CCDS50108.1 - 312.0 0.0 1.0 9.6 169.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096477 Or2h2c ENSMUST00000216341 ENSMUSP00000150988 TRANSLATION protein_coding - CCDS50108.1 5 312.0 0.0 1.0 9.6 169.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096477 Or2h2c ENSMUST00000214994 ENSMUSP00000150998 TRANSLATION protein_coding - CCDS50108.1 5 312.0 0.0 1.0 9.6 169.5 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000023861 Mpc1 ENSMUST00000147427 - NO_TRANSLATION retained_intron ENSMUSG00000023861 Mpc1 ENSMUST00000130559 ENSMUSP00000116307 TRANSLATION protein_coding - - 2 86.0 0.0 2.83 1.4 114.1 1.0 -4,-7 0.0593 3 10.362 MINOR ENSMUSG00000023861 Mpc1 ENSMUST00000137344 - NO_TRANSLATION retained_intron ENSMUSG00000023861 Mpc1 ENSMUST00000142594 ENSMUSP00000119901 TRANSLATION protein_coding - - 5 167.0 0.0 2.83 0.0 117.3 1.0 -4,-7 0.0076 3 10.494 MINOR ENSMUSG00000023861 Mpc1 ENSMUST00000155364 ENSMUSP00000119443 TRANSLATION protein_coding - CCDS49944.1 2 109.0 0.0 3.58 28.3 117.4 1.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000023861 Mpc1 ENSMUST00000145402 ENSMUSP00000122214 TRANSLATION protein_coding stop - 3 78.0 0.0 2.5 0.0 84.0 1.0 -4,-2 0.0015 4 -2.0 MINOR ENSMUSG00000023861 Mpc1 ENSMUST00000124023 ENSMUSP00000118386 TRANSLATION protein_coding - - 2 85.0 0.0 2.83 1.4 114.7 1.0 -4,-7 0.0624 3 10.398 MINOR ENSMUSG00000002831 Plin4 ENSMUST00000190703 ENSMUSP00000139859 TRANSLATION protein_coding - CCDS79565.1 1 1403.0 0.0 -0.2 0.0 70.7 0.0 -4,-2 1.0 46 0.0 PRINCIPAL:2 ENSMUSG00000002831 Plin4 ENSMUST00000238734 ENSMUSP00000158677 TRANSLATION protein_coding - - - 1601.0 0.0 -0.2 0.0 70.7 0.0 -4,-2 0.3363 50 0.0 ALTERNATIVE:2 ENSMUSG00000043683 Fem1a ENSMUST00000060253 ENSMUSP00000057996 TRANSLATION protein_coding - CCDS28899.1 - 654.0 0.0 0.64 1.5 161.8 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000019578 Ubxn6 ENSMUST00000146467 - NO_TRANSLATION retained_intron ENSMUSG00000019578 Ubxn6 ENSMUST00000153947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019578 Ubxn6 ENSMUST00000139371 ENSMUSP00000120423 TRANSLATION protein_coding stop - 3 154.0 2.0 1.75 0.0 43.7 0.0 -4,-1 0.0007 7 -2.0 MINOR ENSMUSG00000019578 Ubxn6 ENSMUST00000151943 - NO_TRANSLATION retained_intron ENSMUSG00000019578 Ubxn6 ENSMUST00000134441 - NO_TRANSLATION retained_intron ENSMUSG00000019578 Ubxn6 ENSMUST00000132804 - NO_TRANSLATION retained_intron ENSMUSG00000019578 Ubxn6 ENSMUST00000019722 ENSMUSP00000019722 TRANSLATION protein_coding - CCDS28893.1 1 442.0 2.0 3.9 0.0 111.0 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000023978 Prph2 ENSMUST00000024773 ENSMUSP00000024773 TRANSLATION protein_coding - CCDS28844.1 1 346.0 0.0 3.0 21.6 96.6 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000023978 Prph2 ENSMUST00000162469 - NO_TRANSLATION retained_intron ENSMUSG00000038146 Notch3 ENSMUST00000087723 ENSMUSP00000085016 TRANSLATION protein_coding - CCDS28614.1 1 2318.0 11.0 16.348 1.0 1164.1 0.0 0,-4 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000038146 Notch3 ENSMUST00000236544 - NO_TRANSLATION retained_intron ENSMUSG00000038146 Notch3 ENSMUST00000235816 ENSMUSP00000158243 TRANSLATION protein_coding start/stop - - 239.0 0.0 2.6 0.0 63.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000073409 H2-Q6 ENSMUST00000174699 ENSMUSP00000134550 TRANSLATION protein_coding - CCDS37598.1 5 326.0 0.0 3.95 0.0 362.7 1.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000073409 H2-Q6 ENSMUST00000113879 ENSMUSP00000109511 TRANSLATION protein_coding - CCDS37598.1 2 326.0 0.0 3.95 0.0 362.7 1.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000025731 Mettl26 ENSMUST00000169085 ENSMUSP00000125990 TRANSLATION protein_coding - - 5 107.0 11.0 2.25 1.0 142.5 0.0 -4,-6 0.0088 3 7.5 MINOR ENSMUSG00000025731 Mettl26 ENSMUST00000110456 ENSMUSP00000106086 TRANSLATION nonsense_mediated_decay - - 2 81.0 11.0 1.0 0.0 93.3 0.0 -4,-6 0.0005 2 -2.0 MINOR ENSMUSG00000025731 Mettl26 ENSMUST00000236426 - NO_TRANSLATION retained_intron ENSMUSG00000025731 Mettl26 ENSMUST00000026827 ENSMUSP00000026827 TRANSLATION protein_coding - CCDS28536.1 1 204.0 10.0 4.5 23.1 306.1 0.0 -4,-7 1.0 6 21.334 PRINCIPAL:1 ENSMUSG00000025731 Mettl26 ENSMUST00000169308 ENSMUSP00000126198 TRANSLATION protein_coding - - 2 201.0 10.0 4.0 0.0 276.1 0.0 -4,-7 0.0169 5 14.532 MINOR ENSMUSG00000041319 Thoc6 ENSMUST00000047436 ENSMUSP00000038137 TRANSLATION protein_coding - CCDS28454.1 1 341.0 2.0 9.83 11.0 23.8 0.0 -4,-6 1.0 9 17.0 PRINCIPAL:1 ENSMUSG00000041319 Thoc6 ENSMUST00000135259 - NO_TRANSLATION retained_intron ENSMUSG00000041319 Thoc6 ENSMUST00000125443 - NO_TRANSLATION retained_intron ENSMUSG00000041319 Thoc6 ENSMUST00000115489 ENSMUSP00000111152 TRANSLATION protein_coding - - 5 337.0 2.0 9.5 0.0 23.8 0.0 -4,-2 0.1173 9 13.34 MINOR ENSMUSG00000041319 Thoc6 ENSMUST00000133849 - NO_TRANSLATION retained_intron ENSMUSG00000041319 Thoc6 ENSMUST00000095579 ENSMUSP00000093239 TRANSLATION protein_coding - CCDS28454.1 1 341.0 2.0 9.83 11.0 23.8 0.0 -4,-6 1.0 9 17.0 PRINCIPAL:1 ENSMUSG00000041319 Thoc6 ENSMUST00000115490 ENSMUSP00000111153 TRANSLATION protein_coding - CCDS28454.1 5 341.0 2.0 9.83 11.0 23.8 0.0 -4,-6 1.0 9 17.0 PRINCIPAL:1 ENSMUSG00000073380 Arrdc5 ENSMUST00000097303 ENSMUSP00000094906 TRANSLATION protein_coding - CCDS28902.1 1 325.0 0.0 1.5 0.4 137.5 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000073380 Arrdc5 ENSMUST00000233911 ENSMUSP00000156666 TRANSLATION protein_coding - - - 131.0 0.0 0.5 0.0 26.6 0.0 -4,-7 0.0 - 1.998 MINOR ENSMUSG00000015467 Egfl8 ENSMUST00000168327 - NO_TRANSLATION retained_intron ENSMUSG00000015467 Egfl8 ENSMUST00000168353 ENSMUSP00000128433 TRANSLATION protein_coding stop - 5 279.0 11.0 1.9 0.0 92.9 0.0 0,-3 0.0743 - -2.0 MINOR ENSMUSG00000015467 Egfl8 ENSMUST00000166095 - NO_TRANSLATION retained_intron ENSMUSG00000015467 Egfl8 ENSMUST00000015611 ENSMUSP00000015611 TRANSLATION protein_coding - CCDS28651.1 1 293.0 11.0 1.9 7.1 92.9 0.0 0,-3 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000015467 Egfl8 ENSMUST00000170850 - NO_TRANSLATION retained_intron ENSMUSG00000015467 Egfl8 ENSMUST00000097345 ENSMUSP00000094958 TRANSLATION protein_coding - - 1 263.0 11.0 1.9 0.0 92.9 0.0 0,-3 0.0623 1 18.0 MINOR ENSMUSG00000092120 Vmn2r90 ENSMUST00000169805 ENSMUSP00000126650 TRANSLATION protein_coding - CCDS49966.1 5 863.0 4.0 3.788 0.4 414.6 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000092120 Vmn2r90 ENSMUST00000232113 ENSMUSP00000155881 TRANSLATION nonsense_mediated_decay - - - 120.0 0.0 0.16 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000092120 Vmn2r90 ENSMUST00000232078 ENSMUSP00000156025 TRANSLATION nonsense_mediated_decay - - - 96.0 0.0 0.16 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000092120 Vmn2r90 ENSMUST00000231659 ENSMUSP00000156120 TRANSLATION nonsense_mediated_decay - - - 74.0 0.0 0.16 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000034868 Myl12b ENSMUST00000233004 ENSMUSP00000156763 TRANSLATION protein_coding - CCDS28954.1 - 172.0 4.0 3.0 34.7 55.5 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000034868 Myl12b ENSMUST00000137537 - NO_TRANSLATION retained_intron ENSMUSG00000034868 Myl12b ENSMUST00000038446 ENSMUSP00000042364 TRANSLATION protein_coding - CCDS28954.1 1 172.0 4.0 3.0 34.7 55.5 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000034868 Myl12b ENSMUST00000131820 - NO_TRANSLATION retained_intron ENSMUSG00000016946 Kctd5 ENSMUST00000234555 - NO_TRANSLATION retained_intron ENSMUSG00000016946 Kctd5 ENSMUST00000127755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016946 Kctd5 ENSMUST00000017090 ENSMUSP00000017090 TRANSLATION protein_coding - CCDS28473.1 1 234.0 0.0 5.0 13.8 81.3 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000002625 Akap8l ENSMUST00000236618 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002625 Akap8l ENSMUST00000236105 - NO_TRANSLATION retained_intron ENSMUSG00000002625 Akap8l ENSMUST00000235265 ENSMUSP00000158056 TRANSLATION protein_coding stop - - 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002625 Akap8l ENSMUST00000237936 ENSMUSP00000158213 TRANSLATION nonsense_mediated_decay start - - 181.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000002625 Akap8l ENSMUST00000237879 - NO_TRANSLATION retained_intron ENSMUSG00000002625 Akap8l ENSMUST00000236494 - NO_TRANSLATION retained_intron ENSMUSG00000002625 Akap8l ENSMUST00000235724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002625 Akap8l ENSMUST00000236503 ENSMUSP00000157684 TRANSLATION protein_coding - - - 607.0 8.0 4.0 1.4 246.6 0.0 -4,-5 0.2722 8 14.16 ALTERNATIVE:2 ENSMUSG00000002625 Akap8l ENSMUST00000235387 - NO_TRANSLATION retained_intron ENSMUSG00000002625 Akap8l ENSMUST00000236039 - NO_TRANSLATION retained_intron ENSMUSG00000002625 Akap8l ENSMUST00000235614 ENSMUSP00000157768 TRANSLATION nonsense_mediated_decay start - - 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002625 Akap8l ENSMUST00000050214 ENSMUSP00000051389 TRANSLATION protein_coding - CCDS50058.1 1 641.0 8.0 4.0 3.5 246.6 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:2 ENSMUSG00000002625 Akap8l ENSMUST00000236765 ENSMUSP00000158510 TRANSLATION protein_coding start/stop - - 262.0 4.0 2.0 0.0 98.6 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000025433 Crisp3 ENSMUST00000026499 ENSMUSP00000026499 TRANSLATION protein_coding - CCDS28783.1 1 241.0 2.0 5.24 0.0 95.8 0.0 4,-1 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000081724 Or10al7 ENSMUST00000216476 ENSMUSP00000149327 TRANSLATION protein_coding - CCDS28772.2 3 321.0 0.0 1.0 7.8 188.8 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000081724 Or10al7 ENSMUST00000122318 ENSMUSP00000113564 TRANSLATION protein_coding - - - 330.0 0.0 1.0 0.0 188.8 7.0 -4,-7 0.118 - 12.0 MINOR ENSMUSG00000012296 Tjap1 ENSMUST00000225359 ENSMUSP00000153626 TRANSLATION protein_coding stop - - 75.0 0.0 0.99 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000012296 Tjap1 ENSMUST00000224696 - NO_TRANSLATION retained_intron ENSMUSG00000012296 Tjap1 ENSMUST00000224090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012296 Tjap1 ENSMUST00000224901 ENSMUSP00000153289 TRANSLATION protein_coding stop - - 37.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000012296 Tjap1 ENSMUST00000164342 ENSMUSP00000130710 TRANSLATION protein_coding - CCDS28824.1 1 539.0 0.0 4.32 0.4 259.3 0.0 -4,-6 0.3443 5 5.34 ALTERNATIVE:2 ENSMUSG00000012296 Tjap1 ENSMUST00000180283 ENSMUSP00000137220 TRANSLATION protein_coding - CCDS28824.1 5 539.0 0.0 4.32 0.4 259.3 0.0 -4,-6 0.3443 5 5.34 ALTERNATIVE:2 ENSMUSG00000012296 Tjap1 ENSMUST00000224445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012296 Tjap1 ENSMUST00000224055 ENSMUSP00000153599 TRANSLATION protein_coding stop - - 61.0 0.0 0.66 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000012296 Tjap1 ENSMUST00000225915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012296 Tjap1 ENSMUST00000225413 ENSMUSP00000153632 TRANSLATION protein_coding - - - 549.0 0.0 4.65 0.4 259.3 0.0 -4,-6 0.7685 5 6.0 PRINCIPAL:2 ENSMUSG00000012296 Tjap1 ENSMUST00000225741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000012296 Tjap1 ENSMUST00000012440 ENSMUSP00000012440 TRANSLATION protein_coding - CCDS28824.1 1 539.0 0.0 4.32 0.4 259.3 0.0 -4,-6 0.3443 5 5.34 ALTERNATIVE:2 ENSMUSG00000012296 Tjap1 ENSMUST00000225288 ENSMUSP00000153561 TRANSLATION protein_coding stop - - 67.0 0.0 0.66 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000012296 Tjap1 ENSMUST00000225080 ENSMUSP00000153327 TRANSLATION protein_coding - CCDS28824.1 - 539.0 0.0 4.32 0.4 259.3 0.0 -4,-6 0.3443 5 5.34 ALTERNATIVE:2 ENSMUSG00000012296 Tjap1 ENSMUST00000224230 ENSMUSP00000153219 TRANSLATION protein_coding stop - - 52.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000012296 Tjap1 ENSMUST00000224404 - NO_TRANSLATION retained_intron ENSMUSG00000012296 Tjap1 ENSMUST00000225943 ENSMUSP00000153022 TRANSLATION protein_coding stop - - 84.0 0.0 1.32 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024191 Bnip1 ENSMUST00000135899 - NO_TRANSLATION retained_intron ENSMUSG00000024191 Bnip1 ENSMUST00000134344 ENSMUSP00000122734 TRANSLATION nonsense_mediated_decay start - 5 126.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024191 Bnip1 ENSMUST00000015725 ENSMUSP00000015725 TRANSLATION protein_coding - CCDS28555.1 1 228.0 0.0 0.0 34.2 117.1 1.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000024191 Bnip1 ENSMUST00000137989 ENSMUSP00000116284 TRANSLATION protein_coding start - 5 125.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024191 Bnip1 ENSMUST00000135824 ENSMUSP00000118933 TRANSLATION protein_coding - - 5 194.0 0.0 0.0 2.2 117.1 1.0 -4,-5 0.1097 5 6.144 MINOR ENSMUSG00000024191 Bnip1 ENSMUST00000147516 - NO_TRANSLATION retained_intron ENSMUSG00000024191 Bnip1 ENSMUST00000126505 ENSMUSP00000118354 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024191 Bnip1 ENSMUST00000131362 - NO_TRANSLATION retained_intron ENSMUSG00000024191 Bnip1 ENSMUST00000128461 - NO_TRANSLATION retained_intron ENSMUSG00000024387 Csnk2b ENSMUST00000174855 - NO_TRANSLATION retained_intron ENSMUSG00000024387 Csnk2b ENSMUST00000174024 ENSMUSP00000134673 TRANSLATION protein_coding - CCDS79541.1 5 257.0 3.0 3.63 0.0 174.9 0.0 -4,-5 0.0005 3 5.598 MINOR ENSMUSG00000024387 Csnk2b ENSMUST00000173633 ENSMUSP00000133826 TRANSLATION protein_coding start - 5 180.0 4.0 1.75 0.0 133.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024387 Csnk2b ENSMUST00000173114 ENSMUSP00000134218 TRANSLATION protein_coding - CCDS28684.1 1 215.0 4.0 5.33 29.9 289.1 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000024387 Csnk2b ENSMUST00000025246 ENSMUSP00000025246 TRANSLATION protein_coding - CCDS28684.1 1 215.0 4.0 5.33 29.9 289.1 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000024387 Csnk2b ENSMUST00000173189 - NO_TRANSLATION retained_intron ENSMUSG00000024387 Csnk2b ENSMUST00000174779 ENSMUSP00000133684 TRANSLATION protein_coding - - 2 164.0 4.0 3.83 0.0 203.1 0.0 -4,-5 0.0 5 7.84 MINOR ENSMUSG00000024387 Csnk2b ENSMUST00000173915 ENSMUSP00000133425 TRANSLATION protein_coding stop - 3 58.0 0.0 1.83 0.0 80.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024387 Csnk2b ENSMUST00000174306 ENSMUSP00000134413 TRANSLATION protein_coding stop - 5 122.0 2.0 3.58 0.0 173.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024387 Csnk2b ENSMUST00000172765 ENSMUSP00000134523 TRANSLATION protein_coding stop - 2 206.0 4.0 4.58 0.0 274.6 0.0 -4,-5 0.0176 5 -2.0 MINOR ENSMUSG00000023982 Guca1a ENSMUST00000059348 ENSMUSP00000060027 TRANSLATION protein_coding - CCDS28848.1 1 202.0 15.0 4.0 10.8 83.3 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000091504 Vmn2r118 ENSMUST00000240715 ENSMUSP00000159508 TRANSLATION protein_coding - - - 850.0 4.0 3.12 0.1 395.1 7.0 2,-3 0.9236 - 12.0 PRINCIPAL:4 ENSMUSG00000091504 Vmn2r118 ENSMUST00000234172 ENSMUSP00000157283 TRANSLATION nonsense_mediated_decay - - - 66.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0038 - -2.0 MINOR ENSMUSG00000091504 Vmn2r118 ENSMUST00000234385 ENSMUSP00000157205 TRANSLATION nonsense_mediated_decay - - - 66.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0038 - -2.0 MINOR ENSMUSG00000091504 Vmn2r118 ENSMUST00000168440 ENSMUSP00000131128 TRANSLATION protein_coding - CCDS50146.1 5 853.0 4.0 3.12 0.1 387.5 7.0 2,-3 0.8086 - 12.0 ALTERNATIVE:2 ENSMUSG00000091504 Vmn2r118 ENSMUST00000234082 ENSMUSP00000157270 TRANSLATION nonsense_mediated_decay - - - 225.0 0.0 1.0 0.0 60.3 0.0 2,-3 0.0016 - -2.0 MINOR ENSMUSG00000041168 Lonp1 ENSMUST00000047226 ENSMUSP00000041814 TRANSLATION protein_coding - CCDS28910.1 1 949.0 15.0 13.2 0.1 196.3 0.0 -1,2 1.0 29 18.0 PRINCIPAL:1 ENSMUSG00000041168 Lonp1 ENSMUST00000233732 ENSMUSP00000156840 TRANSLATION nonsense_mediated_decay - - - 141.0 0.0 0.2 0.0 0.0 0.0 -1,2 0.0 - -2.0 MINOR ENSMUSG00000036430 Tbcc ENSMUST00000040434 ENSMUSP00000048696 TRANSLATION protein_coding - CCDS28843.1 - 341.0 0.0 0.8 6.2 234.9 0.0 -4,-5 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000059142 Zfp945 ENSMUST00000127557 - NO_TRANSLATION retained_intron ENSMUSG00000059142 Zfp945 ENSMUST00000160457 ENSMUSP00000124123 TRANSLATION protein_coding - CCDS50004.1 1 773.0 78.0 1.0 0.0 416.5 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:2 ENSMUSG00000059142 Zfp945 ENSMUST00000088696 ENSMUSP00000086074 TRANSLATION protein_coding - CCDS50005.1 1 794.0 78.0 1.0 0.0 416.5 0.0 -4,-6 0.4522 1 14.0 ALTERNATIVE:2 ENSMUSG00000059142 Zfp945 ENSMUST00000095615 - NO_TRANSLATION retained_intron ENSMUSG00000036552 Ermard ENSMUST00000226464 - NO_TRANSLATION retained_intron ENSMUSG00000036552 Ermard ENSMUST00000227786 - NO_TRANSLATION retained_intron ENSMUSG00000036552 Ermard ENSMUST00000227548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036552 Ermard ENSMUST00000226213 ENSMUSP00000153950 TRANSLATION protein_coding stop - - 211.0 0.0 0.0 0.0 37.1 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000036552 Ermard ENSMUST00000231568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036552 Ermard ENSMUST00000231241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036552 Ermard ENSMUST00000228803 ENSMUSP00000154319 TRANSLATION protein_coding start - - 268.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.002 2 -2.0 MINOR ENSMUSG00000036552 Ermard ENSMUST00000226561 ENSMUSP00000154292 TRANSLATION protein_coding - - - 170.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000036552 Ermard ENSMUST00000187199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036552 Ermard ENSMUST00000226599 ENSMUSP00000154498 TRANSLATION protein_coding - - - 175.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000036552 Ermard ENSMUST00000226384 ENSMUSP00000154263 TRANSLATION nonsense_mediated_decay start - - 106.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036552 Ermard ENSMUST00000226488 - NO_TRANSLATION retained_intron ENSMUSG00000036552 Ermard ENSMUST00000227545 - NO_TRANSLATION retained_intron ENSMUSG00000036552 Ermard ENSMUST00000097393 ENSMUSP00000095005 TRANSLATION protein_coding - CCDS37451.1 1 622.0 0.0 0.0 0.0 82.9 0.0 -4,-7 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000036552 Ermard ENSMUST00000186130 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036552 Ermard ENSMUST00000227252 ENSMUSP00000154126 TRANSLATION nonsense_mediated_decay start - - 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036552 Ermard ENSMUST00000228518 ENSMUSP00000153913 TRANSLATION protein_coding stop - - 82.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000036552 Ermard ENSMUST00000227177 - NO_TRANSLATION retained_intron ENSMUSG00000024245 Tmem178 ENSMUST00000025092 ENSMUSP00000025092 TRANSLATION protein_coding - CCDS37705.1 1 297.0 0.0 0.0 21.2 67.7 0.0 1,-3 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000038838 Vars2 ENSMUST00000164295 - NO_TRANSLATION retained_intron ENSMUSG00000038838 Vars2 ENSMUST00000164978 - NO_TRANSLATION retained_intron ENSMUSG00000038838 Vars2 ENSMUST00000165787 - NO_TRANSLATION retained_intron ENSMUSG00000038838 Vars2 ENSMUST00000168922 ENSMUSP00000129196 TRANSLATION nonsense_mediated_decay start - 1 581.0 4.0 12.1 0.0 438.8 0.0 -4,-6 0.0007 11 -2.0 MINOR ENSMUSG00000038838 Vars2 ENSMUST00000171536 - NO_TRANSLATION retained_intron ENSMUSG00000038838 Vars2 ENSMUST00000165144 ENSMUSP00000132897 TRANSLATION nonsense_mediated_decay - - 3 75.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000038838 Vars2 ENSMUST00000169093 ENSMUSP00000126794 TRANSLATION nonsense_mediated_decay start - 5 112.0 0.0 2.55 0.0 96.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000038838 Vars2 ENSMUST00000174129 - NO_TRANSLATION retained_intron ENSMUSG00000038838 Vars2 ENSMUST00000043674 ENSMUSP00000047917 TRANSLATION protein_coding - CCDS37602.1 1 1060.0 4.0 19.61 4.0 709.5 0.0 -4,-1 1.0 23 18.0 PRINCIPAL:1 ENSMUSG00000038838 Vars2 ENSMUST00000164404 ENSMUSP00000126084 TRANSLATION nonsense_mediated_decay start - 5 215.0 0.0 4.78 0.0 162.8 0.0 -4,-6 0.0004 4 -2.0 MINOR ENSMUSG00000038838 Vars2 ENSMUST00000168885 - NO_TRANSLATION retained_intron ENSMUSG00000038838 Vars2 ENSMUST00000170701 - NO_TRANSLATION retained_intron ENSMUSG00000024173 Tpsab1 ENSMUST00000146856 - NO_TRANSLATION retained_intron ENSMUSG00000024173 Tpsab1 ENSMUST00000249720 ENSMUSP00000159890 TRANSLATION nonsense_mediated_decay - - - 83.0 0.0 0.75 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000024173 Tpsab1 ENSMUST00000249721 ENSMUSP00000159891 TRANSLATION nonsense_mediated_decay - - - 113.0 4.0 1.75 0.0 58.8 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000024173 Tpsab1 ENSMUST00000153118 ENSMUSP00000120741 TRANSLATION protein_coding - - 1 310.0 7.0 4.75 0.1 228.5 0.0 -,- 0.7516 - 18.0 PRINCIPAL:1 ENSMUSG00000024173 Tpsab1 ENSMUST00000249719 ENSMUSP00000159889 TRANSLATION nonsense_mediated_decay - - - 83.0 0.0 0.75 0.0 0.0 0.0 -,- 0.0 - -2.0 MINOR ENSMUSG00000071192 Wfikkn1 ENSMUST00000176696 ENSMUSP00000135083 TRANSLATION protein_coding - CCDS50038.1 3 552.0 0.0 0.0 0.0 182.5 0.0 2,-3 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000071192 Wfikkn1 ENSMUST00000095487 ENSMUSP00000093141 TRANSLATION protein_coding - - 1 518.0 0.0 0.0 0.0 176.5 0.0 -4,-5 0.0535 - 2.0 ALTERNATIVE:2 ENSMUSG00000024213 Nudt3 ENSMUST00000146321 ENSMUSP00000156367 TRANSLATION protein_coding - - 2 77.0 10.0 2.0 0.0 50.1 0.0 -4,-5 0.0006 1 8.082 MINOR ENSMUSG00000024213 Nudt3 ENSMUST00000062397 ENSMUSP00000059061 TRANSLATION protein_coding - - 3 159.0 13.0 4.58 0.4 60.0 0.0 -4,-5 0.0112 4 16.146 MINOR ENSMUSG00000024213 Nudt3 ENSMUST00000114886 ENSMUSP00000110536 TRANSLATION protein_coding - CCDS70776.1 2 139.0 13.0 3.91 1.2 59.4 0.0 -4,-2 0.0609 3 14.802 MINOR ENSMUSG00000024213 Nudt3 ENSMUST00000156429 ENSMUSP00000156024 TRANSLATION protein_coding - - 3 116.0 6.0 3.41 0.0 32.3 0.0 -4,-5 0.0077 3 6.612 MINOR ENSMUSG00000024213 Nudt3 ENSMUST00000176458 ENSMUSP00000135175 TRANSLATION protein_coding stop - 3 60.0 11.0 1.5 0.0 41.8 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000024213 Nudt3 ENSMUST00000133048 - NO_TRANSLATION retained_intron ENSMUSG00000024213 Nudt3 ENSMUST00000025050 ENSMUSP00000025050 TRANSLATION protein_coding - CCDS28566.1 1 168.0 14.0 4.91 17.1 65.8 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000024213 Nudt3 ENSMUST00000231742 ENSMUSP00000156111 TRANSLATION protein_coding - - - 139.0 13.0 3.91 1.2 59.7 0.0 -4,-5 0.0457 3 14.826 MINOR ENSMUSG00000024213 Nudt3 ENSMUST00000127236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024213 Nudt3 ENSMUST00000176876 ENSMUSP00000135890 TRANSLATION protein_coding - - 2 122.0 12.0 3.58 0.0 60.6 0.0 -4,-5 0.0 2 13.536 MINOR ENSMUSG00000045257 Morn2 ENSMUST00000061703 ENSMUSP00000051408 TRANSLATION protein_coding - CCDS37703.1 1 79.0 0.0 2.0 10.8 44.6 0.0 -4,-5 1.0 2 10.35 MINOR ENSMUSG00000045257 Morn2 ENSMUST00000227729 ENSMUSP00000154623 TRANSLATION protein_coding - - - 152.0 0.0 3.45 1.0 63.0 0.0 -4,-7 0.6417 2 12.0 PRINCIPAL:1 ENSMUSG00000071037 Camkmt ENSMUST00000234822 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071037 Camkmt ENSMUST00000095188 ENSMUSP00000092811 TRANSLATION protein_coding - CCDS37712.1 1 323.0 0.0 6.56 10.0 67.5 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000071037 Camkmt ENSMUST00000234501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063994 Or10al4 ENSMUST00000077498 ENSMUSP00000094931 TRANSLATION protein_coding - CCDS28762.1 - 330.0 0.0 1.0 0.0 198.4 7.0 -4,-7 0.3807 - 12.0 MINOR ENSMUSG00000063994 Or10al4 ENSMUST00000207771 ENSMUSP00000146861 TRANSLATION protein_coding - - 2 321.0 0.0 1.0 7.1 198.4 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079657 Rab26 ENSMUST00000035797 ENSMUSP00000046089 TRANSLATION protein_coding - CCDS50016.1 1 260.0 22.0 5.15 11.2 200.1 0.0 -4,-2 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000079657 Rab26 ENSMUST00000177441 - NO_TRANSLATION retained_intron ENSMUSG00000079657 Rab26 ENSMUST00000176533 ENSMUSP00000135775 TRANSLATION protein_coding - - 5 295.0 22.0 5.15 0.0 200.1 0.0 -4,-2 0.0784 6 18.0 MINOR ENSMUSG00000079657 Rab26 ENSMUST00000061764 ENSMUSP00000055970 TRANSLATION protein_coding - - 2 197.0 19.0 2.45 0.0 89.4 0.0 -4,-2 0.0 3 4.602 MINOR ENSMUSG00000079657 Rab26 ENSMUST00000176025 - NO_TRANSLATION retained_intron ENSMUSG00000025739 Gng13 ENSMUST00000115108 ENSMUSP00000110760 TRANSLATION protein_coding - CCDS37503.1 1 67.0 0.0 2.0 31.0 53.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000025739 Gng13 ENSMUST00000172002 ENSMUSP00000131648 TRANSLATION protein_coding - CCDS37503.1 1 67.0 0.0 2.0 31.0 53.9 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000073436 Eme2 ENSMUST00000156659 - NO_TRANSLATION retained_intron ENSMUSG00000073436 Eme2 ENSMUST00000139754 ENSMUSP00000118245 TRANSLATION nonsense_mediated_decay - - 1 72.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0003 - -2.0 MINOR ENSMUSG00000073436 Eme2 ENSMUST00000127293 - NO_TRANSLATION retained_intron ENSMUSG00000073436 Eme2 ENSMUST00000140688 - NO_TRANSLATION retained_intron ENSMUSG00000073436 Eme2 ENSMUST00000128953 - NO_TRANSLATION retained_intron ENSMUSG00000073436 Eme2 ENSMUST00000121542 ENSMUSP00000113936 TRANSLATION protein_coding - CCDS50023.1 1 373.0 0.0 3.55 3.5 37.2 0.0 -4,-1 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000073436 Eme2 ENSMUST00000119848 ENSMUSP00000113167 TRANSLATION protein_coding - - 1 352.0 0.0 2.35 0.0 37.2 0.0 -4,-1 0.0277 1 9.6 MINOR ENSMUSG00000073436 Eme2 ENSMUST00000145882 - NO_TRANSLATION retained_intron ENSMUSG00000052142 Rasal3 ENSMUST00000141714 - NO_TRANSLATION retained_intron ENSMUSG00000052142 Rasal3 ENSMUST00000136375 ENSMUSP00000118738 TRANSLATION nonsense_mediated_decay - - 2 601.0 0.0 2.2 0.0 29.4 0.0 -4,-5 0.0013 11 -2.0 MINOR ENSMUSG00000052142 Rasal3 ENSMUST00000135618 ENSMUSP00000116107 TRANSLATION protein_coding - - 5 1019.0 0.0 5.28 0.4 71.4 0.0 -4,-5 0.2758 20 6.0 ALTERNATIVE:2 ENSMUSG00000052142 Rasal3 ENSMUST00000137458 ENSMUSP00000123141 TRANSLATION protein_coding - CCDS84292.1 1 1043.0 0.0 5.28 0.0 71.4 0.0 -4,-5 0.8423 20 6.0 ALTERNATIVE:2 ENSMUSG00000052142 Rasal3 ENSMUST00000142203 - NO_TRANSLATION retained_intron ENSMUSG00000052142 Rasal3 ENSMUST00000134723 - NO_TRANSLATION retained_intron ENSMUSG00000052142 Rasal3 ENSMUST00000143808 - NO_TRANSLATION retained_intron ENSMUSG00000052142 Rasal3 ENSMUST00000135560 - NO_TRANSLATION retained_intron ENSMUSG00000052142 Rasal3 ENSMUST00000135968 - NO_TRANSLATION retained_intron ENSMUSG00000052142 Rasal3 ENSMUST00000063824 ENSMUSP00000064084 TRANSLATION protein_coding - CCDS37556.1 1 1041.0 0.0 5.28 0.4 71.4 0.0 -4,-7 1.0 20 6.0 PRINCIPAL:4 ENSMUSG00000092349 Smim40 ENSMUST00000172817 ENSMUSP00000154114 TRANSLATION protein_coding - - 1 81.0 0.0 1.0 0.7 0.0 0.0 -4,-5 0.6645 - 6.0 PRINCIPAL:1 ENSMUSG00000024038 Ndufv3 ENSMUST00000185273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024038 Ndufv3 ENSMUST00000191598 ENSMUSP00000140032 TRANSLATION protein_coding - - 1 86.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0008 - 0.0 MINOR ENSMUSG00000024038 Ndufv3 ENSMUST00000046288 ENSMUSP00000049000 TRANSLATION protein_coding - CCDS37549.1 1 468.0 0.0 1.0 0.0 59.4 0.0 -4,0 0.2704 12 12.0 MINOR ENSMUSG00000024038 Ndufv3 ENSMUST00000189436 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024038 Ndufv3 ENSMUST00000064798 ENSMUSP00000066303 TRANSLATION protein_coding - CCDS37550.1 1 104.0 0.0 1.0 6.4 59.4 0.0 -4,0 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000023828 Slc22a3 ENSMUST00000233535 ENSMUSP00000156407 TRANSLATION nonsense_mediated_decay - - - 363.0 0.0 3.182 1.0 76.5 6.0 -3,-2 0.018 1 -2.0 MINOR ENSMUSG00000023828 Slc22a3 ENSMUST00000024595 ENSMUSP00000024595 TRANSLATION protein_coding - CCDS28391.1 1 551.0 0.0 7.35 9.7 94.1 12.0 -3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000024172 St6gal2 ENSMUST00000086878 ENSMUSP00000084091 TRANSLATION protein_coding - - 1 438.0 7.0 2.6 0.0 93.1 1.0 -1,-5 0.0 - 9.69 MINOR ENSMUSG00000024172 St6gal2 ENSMUST00000133899 ENSMUSP00000120762 TRANSLATION protein_coding stop - 1 355.0 2.0 0.0 0.0 0.0 1.0 -1,-5 0.0039 - -2.0 MINOR ENSMUSG00000024172 St6gal2 ENSMUST00000025000 ENSMUSP00000025000 TRANSLATION protein_coding - CCDS84324.1 5 524.0 14.0 3.4 1.1 127.1 1.0 -1,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000024172 St6gal2 ENSMUST00000153220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041429 Nthl1 ENSMUST00000047611 ENSMUSP00000047413 TRANSLATION protein_coding - CCDS28487.1 1 300.0 13.0 5.0 2.2 122.0 0.0 -4,-1 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000041429 Nthl1 ENSMUST00000234260 - NO_TRANSLATION retained_intron ENSMUSG00000041429 Nthl1 ENSMUST00000234888 - NO_TRANSLATION retained_intron ENSMUSG00000041429 Nthl1 ENSMUST00000234635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041429 Nthl1 ENSMUST00000234308 - NO_TRANSLATION retained_intron ENSMUSG00000041293 Adgrf1 ENSMUST00000047399 ENSMUSP00000049380 TRANSLATION protein_coding - CCDS28795.1 1 908.0 0.0 1.472 4.0 196.1 0.0 2,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035186 Ubd ENSMUST00000038844 ENSMUSP00000035808 TRANSLATION protein_coding - CCDS28737.1 1 162.0 0.0 1.0 7.1 86.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024218 Taf11 ENSMUST00000233306 - NO_TRANSLATION retained_intron ENSMUSG00000024218 Taf11 ENSMUST00000114848 ENSMUSP00000110498 TRANSLATION protein_coding - CCDS28571.1 1 211.0 0.0 2.75 11.0 136.2 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000024218 Taf11 ENSMUST00000155667 - NO_TRANSLATION retained_intron ENSMUSG00000024218 Taf11 ENSMUST00000233439 ENSMUSP00000156447 TRANSLATION nonsense_mediated_decay - - - 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024218 Taf11 ENSMUST00000025057 ENSMUSP00000025057 TRANSLATION protein_coding - CCDS28571.1 1 211.0 0.0 2.75 11.0 136.2 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000024218 Taf11 ENSMUST00000232820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024218 Taf11 ENSMUST00000233681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024218 Taf11 ENSMUST00000233106 - NO_TRANSLATION retained_intron ENSMUSG00000092586 Ly6g6c ENSMUST00000173207 ENSMUSP00000134194 TRANSLATION protein_coding - - 3 152.0 0.0 2.0 0.0 0.0 0.0 1,-3 0.0721 4 6.0 ALTERNATIVE:2 ENSMUSG00000092586 Ly6g6c ENSMUST00000174876 ENSMUSP00000133838 TRANSLATION protein_coding - - 1 74.0 0.0 1.0 0.0 0.0 0.0 4,-1 0.0592 1 3.0 MINOR ENSMUSG00000092586 Ly6g6c ENSMUST00000173478 ENSMUSP00000133510 TRANSLATION protein_coding - CCDS28677.1 1 126.0 0.0 2.0 2.6 0.0 0.0 4,-1 1.0 4 7.0 PRINCIPAL:2 ENSMUSG00000024140 Epas1 ENSMUST00000024954 ENSMUSP00000024954 TRANSLATION protein_coding - CCDS37713.1 1 874.0 0.0 6.782 8.3 227.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024140 Epas1 ENSMUST00000234447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034254 Agpat1 ENSMUST00000174595 ENSMUSP00000134358 TRANSLATION protein_coding - CCDS37590.1 5 285.0 2.0 6.58 12.5 114.8 3.0 2,-2 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000034254 Agpat1 ENSMUST00000173973 ENSMUSP00000133947 TRANSLATION nonsense_mediated_decay - - 5 83.0 0.0 1.5 0.0 0.0 2.0 2,-2 0.0046 - -2.0 MINOR ENSMUSG00000034254 Agpat1 ENSMUST00000174228 ENSMUSP00000133876 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 1.0 0.0 0.0 2.0 2,-2 0.0036 - -2.0 MINOR ENSMUSG00000034254 Agpat1 ENSMUST00000174041 ENSMUSP00000133441 TRANSLATION protein_coding stop - 5 198.0 2.0 4.83 0.0 101.2 3.0 2,-2 0.0187 1 -2.0 MINOR ENSMUSG00000034254 Agpat1 ENSMUST00000173242 ENSMUSP00000134242 TRANSLATION protein_coding stop - 2 149.0 2.0 3.33 0.0 47.2 3.0 2,-2 0.0039 - -2.0 MINOR ENSMUSG00000034254 Agpat1 ENSMUST00000173146 - NO_TRANSLATION retained_intron ENSMUSG00000034254 Agpat1 ENSMUST00000114140 ENSMUSP00000109776 TRANSLATION protein_coding - CCDS37590.1 1 285.0 2.0 6.58 12.5 114.8 3.0 2,-2 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000034254 Agpat1 ENSMUST00000037489 ENSMUSP00000048573 TRANSLATION protein_coding - CCDS37590.1 1 285.0 2.0 6.58 12.5 114.8 3.0 2,-2 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000067722 Uqcc4 ENSMUST00000232784 - NO_TRANSLATION retained_intron ENSMUSG00000067722 Uqcc4 ENSMUST00000088307 ENSMUSP00000137122 TRANSLATION protein_coding - CCDS57057.1 2 136.0 0.0 0.6 6.0 83.4 0.0 -4,0 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000091151 Vmn1r224 ENSMUST00000233863 ENSMUSP00000156578 TRANSLATION protein_coding - - - 96.0 0.0 0.0 0.0 38.8 4.0 -4,-1 0.007 - 2.352 MINOR ENSMUSG00000091151 Vmn1r224 ENSMUST00000233891 ENSMUSP00000156520 TRANSLATION protein_coding - - - 96.0 0.0 0.0 0.0 38.8 4.0 -4,-1 0.007 - 2.352 MINOR ENSMUSG00000091151 Vmn1r224 ENSMUST00000170076 ENSMUSP00000132957 TRANSLATION protein_coding - CCDS49985.1 - 298.0 0.0 0.0 1.1 99.1 9.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000091151 Vmn1r224 ENSMUST00000233980 ENSMUSP00000156898 TRANSLATION protein_coding - CCDS49985.1 - 298.0 0.0 0.0 1.1 99.1 9.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000091151 Vmn1r224 ENSMUST00000233600 ENSMUSP00000156952 TRANSLATION protein_coding - - - 96.0 0.0 0.0 0.0 38.8 4.0 -4,-1 0.007 - 2.352 MINOR ENSMUSG00000091151 Vmn1r224 ENSMUST00000233161 ENSMUSP00000156647 TRANSLATION protein_coding - - - 96.0 0.0 0.0 0.0 38.8 4.0 -4,-1 0.007 - 2.352 MINOR ENSMUSG00000091151 Vmn1r224 ENSMUST00000233318 ENSMUSP00000156598 TRANSLATION protein_coding - - - 232.0 0.0 0.0 0.0 94.8 7.0 -4,-7 0.0293 - 5.742 MINOR ENSMUSG00000091151 Vmn1r224 ENSMUST00000233642 ENSMUSP00000156636 TRANSLATION protein_coding - CCDS49985.1 - 298.0 0.0 0.0 1.1 99.1 9.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000091151 Vmn1r224 ENSMUST00000233743 ENSMUSP00000156419 TRANSLATION protein_coding - - - 232.0 0.0 0.0 0.0 94.8 7.0 -4,-7 0.0293 - 5.742 MINOR ENSMUSG00000095990 Zfp97 ENSMUST00000147630 ENSMUSP00000114301 TRANSLATION protein_coding - CCDS49965.1 2 546.0 55.0 1.15 0.0 263.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000043286 Pnpla1 ENSMUST00000056866 ENSMUSP00000050123 TRANSLATION protein_coding - CCDS37533.1 1 599.0 0.0 3.1 0.0 47.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043286 Pnpla1 ENSMUST00000114737 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023083 H2-M10.2 ENSMUST00000023845 ENSMUSP00000023845 TRANSLATION protein_coding - CCDS28720.1 1 329.0 0.0 4.0 0.0 222.9 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079707 Dynlt2a1 ENSMUST00000040746 ENSMUSP00000036704 TRANSLATION protein_coding - CCDS28408.1 1 191.0 0.0 2.4 6.3 74.8 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079707 Dynlt2a1 ENSMUST00000097398 ENSMUSP00000095010 TRANSLATION protein_coding - CCDS28409.1 1 139.0 0.0 1.4 2.0 40.0 0.0 -4,-7 0.0734 - 7.086 MINOR ENSMUSG00000073458 Smok2a ENSMUST00000238835 ENSMUSP00000159158 TRANSLATION protein_coding - - - 484.0 18.0 0.5 0.0 234.2 0.0 -4,-5 0.1047 - 16.614 MINOR ENSMUSG00000073458 Smok2a ENSMUST00000080647 ENSMUSP00000094432 TRANSLATION protein_coding - CCDS49951.1 1 504.0 18.0 0.65 0.1 234.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000024170 Telo2 ENSMUST00000139196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024170 Telo2 ENSMUST00000151205 - NO_TRANSLATION retained_intron ENSMUSG00000024170 Telo2 ENSMUST00000155632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024170 Telo2 ENSMUST00000152460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024170 Telo2 ENSMUST00000143390 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024170 Telo2 ENSMUST00000156698 - NO_TRANSLATION retained_intron ENSMUSG00000024170 Telo2 ENSMUST00000155607 - NO_TRANSLATION retained_intron ENSMUSG00000024170 Telo2 ENSMUST00000130525 - NO_TRANSLATION retained_intron ENSMUSG00000024170 Telo2 ENSMUST00000146522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024170 Telo2 ENSMUST00000115181 ENSMUSP00000110835 TRANSLATION protein_coding - CCDS28507.1 1 840.0 0.0 0.0 2.4 119.7 0.0 -4,-5 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000024170 Telo2 ENSMUST00000024987 ENSMUSP00000024987 TRANSLATION protein_coding - CCDS28507.1 1 840.0 0.0 0.0 2.4 119.7 0.0 -4,-5 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000090509 Sfta2 ENSMUST00000174534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090509 Sfta2 ENSMUST00000171166 ENSMUSP00000132839 TRANSLATION protein_coding - CCDS50093.1 1 77.0 0.0 0.0 1.2 113.7 0.0 4,-1 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000090509 Sfta2 ENSMUST00000174521 ENSMUSP00000134221 TRANSLATION protein_coding - - 3 117.0 0.0 0.0 0.0 51.3 0.0 -4,-2 0.0 - 2.256 MINOR ENSMUSG00000024197 Plin3 ENSMUST00000233070 ENSMUSP00000156720 TRANSLATION protein_coding stop - - 134.0 0.0 0.0 0.0 191.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000024197 Plin3 ENSMUST00000019726 ENSMUSP00000019726 TRANSLATION protein_coding - CCDS28901.1 1 437.0 0.0 1.0 7.6 545.1 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000015476 Prrt1 ENSMUST00000172945 - NO_TRANSLATION retained_intron ENSMUSG00000015476 Prrt1 ENSMUST00000015620 ENSMUSP00000015620 TRANSLATION protein_coding - CCDS28653.1 5 306.0 0.0 0.0 6.4 74.9 0.0 -4,-5 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000091971 Hspa1a ENSMUST00000087328 ENSMUSP00000084586 TRANSLATION protein_coding - CCDS50080.1 - 641.0 20.0 1.0 22.9 865.4 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000024130 Abca3 ENSMUST00000117337 ENSMUSP00000113538 TRANSLATION protein_coding - - 1 1449.0 21.0 11.596 0.0 360.3 14.0 -3,-5 0.0833 10 16.38 MINOR ENSMUSG00000024130 Abca3 ENSMUST00000149233 - NO_TRANSLATION retained_intron ENSMUSG00000024130 Abca3 ENSMUST00000079594 ENSMUSP00000078544 TRANSLATION protein_coding - CCDS37486.1 5 1704.0 21.0 11.596 9.8 387.3 14.0 -3,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000024130 Abca3 ENSMUST00000133816 - NO_TRANSLATION retained_intron ENSMUSG00000024130 Abca3 ENSMUST00000148557 - NO_TRANSLATION retained_intron ENSMUSG00000024130 Abca3 ENSMUST00000039013 ENSMUSP00000045285 TRANSLATION protein_coding - CCDS37486.1 1 1704.0 21.0 11.596 9.8 387.3 14.0 -3,-5 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000024130 Abca3 ENSMUST00000155889 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024130 Abca3 ENSMUST00000234109 - NO_TRANSLATION retained_intron ENSMUSG00000024130 Abca3 ENSMUST00000136295 - NO_TRANSLATION retained_intron ENSMUSG00000034709 Ppp1r21 ENSMUST00000188064 - NO_TRANSLATION retained_intron ENSMUSG00000034709 Ppp1r21 ENSMUST00000191340 - NO_TRANSLATION retained_intron ENSMUSG00000034709 Ppp1r21 ENSMUST00000185400 - NO_TRANSLATION retained_intron ENSMUSG00000034709 Ppp1r21 ENSMUST00000038551 ENSMUSP00000048443 TRANSLATION protein_coding - CCDS29023.1 1 780.0 0.0 0.0 20.3 1019.1 0.0 -4,-5 1.0 28 10.0 PRINCIPAL:1 ENSMUSG00000034709 Ppp1r21 ENSMUST00000189734 - NO_TRANSLATION retained_intron ENSMUSG00000034709 Ppp1r21 ENSMUST00000190136 - NO_TRANSLATION retained_intron ENSMUSG00000007029 Vars ENSMUST00000087315 ENSMUSP00000084572 TRANSLATION protein_coding - CCDS37593.1 1 1263.0 2.0 21.638 10.7 828.7 0.0 -4,-5 1.0 48 17.0 PRINCIPAL:1 ENSMUSG00000007029 Vars ENSMUST00000172741 - NO_TRANSLATION retained_intron ENSMUSG00000007029 Vars ENSMUST00000173142 ENSMUSP00000134669 TRANSLATION protein_coding start/stop - 3 130.0 0.0 2.8 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000007029 Vars ENSMUST00000173911 - NO_TRANSLATION retained_intron ENSMUSG00000007029 Vars ENSMUST00000174084 - NO_TRANSLATION retained_intron ENSMUSG00000007029 Vars ENSMUST00000174260 ENSMUSP00000134313 TRANSLATION protein_coding stop - 2 230.0 0.0 1.798 0.0 48.5 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000007029 Vars ENSMUST00000172570 ENSMUSP00000134245 TRANSLATION protein_coding stop - 2 125.0 0.0 1.6 0.0 49.1 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000007029 Vars ENSMUST00000172656 - NO_TRANSLATION retained_intron ENSMUSG00000007029 Vars ENSMUST00000173302 - NO_TRANSLATION retained_intron ENSMUSG00000007029 Vars ENSMUST00000172637 - NO_TRANSLATION retained_intron ENSMUSG00000007029 Vars ENSMUST00000172999 - NO_TRANSLATION retained_intron ENSMUSG00000007029 Vars ENSMUST00000173584 ENSMUSP00000133994 TRANSLATION protein_coding stop - 1 1278.0 2.0 21.338 0.0 828.7 0.0 -4,-5 0.2907 45 -2.0 MINOR ENSMUSG00000007029 Vars ENSMUST00000173336 - NO_TRANSLATION retained_intron ENSMUSG00000002664 Pspn ENSMUST00000002740 ENSMUSP00000002740 TRANSLATION protein_coding - CCDS28922.1 1 156.0 0.0 1.0 2.1 47.8 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000067235 H2-Q10 ENSMUST00000174589 - NO_TRANSLATION retained_intron ENSMUSG00000067235 H2-Q10 ENSMUST00000068291 ENSMUSP00000066419 TRANSLATION protein_coding - CCDS37599.1 1 325.0 0.0 3.6 0.0 376.9 0.0 3,-2 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000067235 H2-Q10 ENSMUST00000174525 ENSMUSP00000134163 TRANSLATION protein_coding - CCDS37599.1 5 325.0 0.0 3.6 0.0 376.9 0.0 3,-2 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000036820 Amdhd2 ENSMUST00000131766 - NO_TRANSLATION retained_intron ENSMUSG00000036820 Amdhd2 ENSMUST00000138685 ENSMUSP00000122523 TRANSLATION protein_coding - - 3 446.0 12.0 7.75 0.0 25.2 0.0 -4,-2 0.0019 8 11.058 MINOR ENSMUSG00000036820 Amdhd2 ENSMUST00000040735 ENSMUSP00000036141 TRANSLATION protein_coding - CCDS28475.1 1 409.0 12.0 9.5 17.8 59.2 0.0 -4,-2 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000036820 Amdhd2 ENSMUST00000129523 ENSMUSP00000120520 TRANSLATION protein_coding - - 3 453.0 12.0 8.5 0.0 42.1 0.0 -4,-2 0.0081 8 14.268 MINOR ENSMUSG00000036820 Amdhd2 ENSMUST00000234818 - NO_TRANSLATION retained_intron ENSMUSG00000036820 Amdhd2 ENSMUST00000132944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036820 Amdhd2 ENSMUST00000130520 - NO_TRANSLATION retained_intron ENSMUSG00000036820 Amdhd2 ENSMUST00000234886 - NO_TRANSLATION retained_intron ENSMUSG00000071276 Fpr-rs7 ENSMUST00000095637 ENSMUSP00000093297 TRANSLATION protein_coding - - - 338.0 0.0 1.0 0.0 128.5 0.0 -4,-7 0.7863 - 12.0 PRINCIPAL:1 ENSMUSG00000038805 Six3 ENSMUST00000175898 ENSMUSP00000135677 TRANSLATION protein_coding - CCDS50203.1 1 333.0 0.0 1.0 5.7 203.8 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038805 Six3 ENSMUST00000162695 ENSMUSP00000125169 TRANSLATION protein_coding - - 5 347.0 0.0 1.0 0.0 203.8 0.0 -4,-7 0.0759 - 12.0 MINOR ENSMUSG00000038805 Six3 ENSMUST00000176081 ENSMUSP00000135312 TRANSLATION protein_coding - CCDS50203.1 1 333.0 0.0 1.0 5.7 203.8 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000039656 Rxrb ENSMUST00000174645 - NO_TRANSLATION retained_intron ENSMUSG00000039656 Rxrb ENSMUST00000174130 - NO_TRANSLATION retained_intron ENSMUSG00000039656 Rxrb ENSMUST00000116612 ENSMUSP00000112311 TRANSLATION protein_coding - CCDS57068.1 1 410.0 26.0 6.88 0.0 272.3 0.0 -4,-6 0.2917 6 14.0 ALTERNATIVE:2 ENSMUSG00000039656 Rxrb ENSMUST00000174299 ENSMUSP00000133775 TRANSLATION protein_coding - - 1 520.0 26.0 6.88 1.1 272.3 0.0 -4,-2 0.6772 6 15.0 PRINCIPAL:2 ENSMUSG00000039656 Rxrb ENSMUST00000173554 - NO_TRANSLATION retained_intron ENSMUSG00000039656 Rxrb ENSMUST00000174033 - NO_TRANSLATION retained_intron ENSMUSG00000039656 Rxrb ENSMUST00000174740 - NO_TRANSLATION retained_intron ENSMUSG00000039656 Rxrb ENSMUST00000044858 ENSMUSP00000036585 TRANSLATION protein_coding - CCDS57066.1 1 524.0 26.0 6.88 0.8 273.6 0.0 -4,-2 0.6035 6 13.5 MINOR ENSMUSG00000039656 Rxrb ENSMUST00000173354 ENSMUSP00000133661 TRANSLATION protein_coding - CCDS57067.1 1 414.0 26.0 6.88 1.0 273.6 0.0 -4,-6 0.3459 6 13.5 MINOR ENSMUSG00000039656 Rxrb ENSMUST00000174578 - NO_TRANSLATION retained_intron ENSMUSG00000024120 Lrpprc ENSMUST00000162799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024120 Lrpprc ENSMUST00000160414 - NO_TRANSLATION retained_intron ENSMUSG00000024120 Lrpprc ENSMUST00000159222 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024120 Lrpprc ENSMUST00000112308 ENSMUSP00000107927 TRANSLATION protein_coding - CCDS29003.2 1 1392.0 0.0 3.446 8.1 65.0 0.0 -1,1 1.0 65 15.0 PRINCIPAL:1 ENSMUSG00000024120 Lrpprc ENSMUST00000161299 - NO_TRANSLATION retained_intron ENSMUSG00000024120 Lrpprc ENSMUST00000160011 ENSMUSP00000123795 TRANSLATION nonsense_mediated_decay start - 3 142.0 0.0 0.85 0.0 15.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024120 Lrpprc ENSMUST00000161928 - NO_TRANSLATION retained_intron ENSMUSG00000046196 Ttc39d ENSMUST00000134652 ENSMUSP00000123158 TRANSLATION protein_coding - CCDS50187.1 3 604.0 0.0 1.0 0.4 489.8 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000046196 Ttc39d ENSMUST00000053168 ENSMUSP00000053781 TRANSLATION protein_coding - CCDS50187.1 - 604.0 0.0 1.0 0.4 489.8 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000058802 Or1o2 ENSMUST00000214622 ENSMUSP00000149629 TRANSLATION protein_coding - CCDS28741.1 5 310.0 0.0 1.0 2.2 183.9 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000058802 Or1o2 ENSMUST00000073667 ENSMUSP00000094937 TRANSLATION protein_coding - CCDS28741.1 5 310.0 0.0 1.0 2.2 183.9 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000058802 Or1o2 ENSMUST00000213328 ENSMUSP00000150892 TRANSLATION protein_coding - CCDS28741.1 5 310.0 0.0 1.0 2.2 183.9 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000058802 Or1o2 ENSMUST00000216225 ENSMUSP00000151044 TRANSLATION protein_coding - CCDS28741.1 5 310.0 0.0 1.0 2.2 183.9 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000058802 Or1o2 ENSMUST00000214848 ENSMUSP00000150081 TRANSLATION protein_coding - CCDS28741.1 5 310.0 0.0 1.0 2.2 183.9 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000058802 Or1o2 ENSMUST00000207414 ENSMUSP00000146667 TRANSLATION protein_coding - CCDS28741.1 - 310.0 0.0 1.0 2.2 183.9 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000024109 Nrxn1 ENSMUST00000174331 ENSMUSP00000133491 TRANSLATION protein_coding - - 5 1477.0 8.0 15.075 8.5 600.2 4.0 3,-2 0.7235 27 14.95 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000161637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024109 Nrxn1 ENSMUST00000162002 - NO_TRANSLATION retained_intron ENSMUSG00000024109 Nrxn1 ENSMUST00000072671 ENSMUSP00000072458 TRANSLATION protein_coding - - 5 1496.0 8.0 15.6525 8.5 606.0 4.0 3,-2 0.8684 28 16.308 ALTERNATIVE:1 ENSMUSG00000024109 Nrxn1 ENSMUST00000173917 ENSMUSP00000133389 TRANSLATION protein_coding - CCDS84338.1 2 142.0 0.0 0.0 7.5 34.1 4.0 -4,-5 0.4235 3 2.0 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000159778 ENSMUSP00000125561 TRANSLATION protein_coding - CCDS84340.1 5 438.0 4.0 4.08 6.3 119.2 5.0 -3,-6 0.2435 8 4.632 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000160467 - NO_TRANSLATION retained_intron ENSMUSG00000024109 Nrxn1 ENSMUST00000176918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024109 Nrxn1 ENSMUST00000161402 ENSMUSP00000124116 TRANSLATION protein_coding - - 5 1514.0 8.0 15.075 10.0 596.0 4.0 3,-2 0.7787 28 15.01 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000197268 ENSMUSP00000142815 TRANSLATION protein_coding - CCDS84339.1 3 139.0 0.0 0.0 14.0 34.1 4.0 -4,-5 0.7972 3 4.0 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000198899 - NO_TRANSLATION retained_intron ENSMUSG00000024109 Nrxn1 ENSMUST00000160844 ENSMUSP00000125407 TRANSLATION protein_coding - CCDS57113.1 1 1507.0 8.0 15.405 8.5 597.9 4.0 3,-2 0.9267 28 15.41 ALTERNATIVE:1 ENSMUSG00000024109 Nrxn1 ENSMUST00000176118 ENSMUSP00000135241 TRANSLATION protein_coding start/stop - 5 213.0 0.0 4.0 0.0 80.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000174337 ENSMUSP00000133724 TRANSLATION protein_coding - CCDS84341.1 5 468.0 4.0 4.41 7.0 116.9 5.0 -3,-6 0.2806 9 4.848 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000159419 - NO_TRANSLATION retained_intron ENSMUSG00000024109 Nrxn1 ENSMUST00000054059 ENSMUSP00000057294 TRANSLATION protein_coding - - 5 1499.0 8.0 15.6525 8.5 606.0 4.0 3,-2 0.8724 28 16.308 ALTERNATIVE:1 ENSMUSG00000024109 Nrxn1 ENSMUST00000162227 - NO_TRANSLATION retained_intron ENSMUSG00000024109 Nrxn1 ENSMUST00000173222 ENSMUSP00000146701 TRANSLATION protein_coding - - 1 75.0 0.0 0.0 0.0 32.4 4.0 2,-2 0.0024 2 0.0 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000197104 ENSMUSP00000142621 TRANSLATION protein_coding start/stop - 5 186.0 2.0 2.0 0.0 46.9 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000160800 ENSMUSP00000124561 TRANSLATION protein_coding - CCDS57112.1 1 1495.0 8.0 15.3225 8.5 606.0 4.0 3,-2 1.0 28 15.648 PRINCIPAL:4 ENSMUSG00000024109 Nrxn1 ENSMUST00000196559 ENSMUSP00000142891 TRANSLATION protein_coding start - 3 172.0 1.0 3.66 0.0 45.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000197224 ENSMUSP00000142650 TRANSLATION protein_coding start/stop - 5 169.0 2.0 1.66 0.0 64.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000161102 - NO_TRANSLATION retained_intron ENSMUSG00000024109 Nrxn1 ENSMUST00000172466 ENSMUSP00000134402 TRANSLATION protein_coding - CCDS84342.1 5 465.0 4.0 4.41 7.0 116.9 5.0 -3,-6 0.2806 9 4.848 MINOR ENSMUSG00000024109 Nrxn1 ENSMUST00000177342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024109 Nrxn1 ENSMUST00000196269 - NO_TRANSLATION retained_intron ENSMUSG00000035435 Abca17 ENSMUST00000121226 ENSMUSP00000112538 TRANSLATION protein_coding - CCDS37485.1 5 1733.0 14.0 9.6 0.0 333.0 11.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000035435 Abca17 ENSMUST00000227002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035435 Abca17 ENSMUST00000039324 ENSMUSP00000046218 TRANSLATION protein_coding - CCDS37485.1 1 1733.0 14.0 9.6 0.0 333.0 11.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000035435 Abca17 ENSMUST00000234232 ENSMUSP00000157369 TRANSLATION protein_coding - - - 214.0 0.0 1.0 0.0 0.0 1.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000054723 Vmac ENSMUST00000233400 ENSMUSP00000156428 TRANSLATION protein_coding stop - - 36.0 0.0 1.08 0.0 0.0 0.0 -4,-6 0.0053 1 -2.0 MINOR ENSMUSG00000054723 Vmac ENSMUST00000233208 ENSMUSP00000156940 TRANSLATION protein_coding stop - - 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0114 - -2.0 MINOR ENSMUSG00000054723 Vmac ENSMUST00000164907 ENSMUSP00000132817 TRANSLATION protein_coding - CCDS50154.1 1 82.0 0.0 1.08 0.0 0.0 0.0 -4,-6 0.0931 2 2.292 MINOR ENSMUSG00000054723 Vmac ENSMUST00000067931 ENSMUSP00000064120 TRANSLATION protein_coding - CCDS28912.1 1 174.0 0.0 2.83 6.8 0.0 0.0 -4,-2 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000023911 Flywch2 ENSMUST00000122991 ENSMUSP00000118135 TRANSLATION nonsense_mediated_decay start - 2 78.0 0.0 0.6 0.0 53.2 0.0 -4,-7 0.0192 1 -2.0 MINOR ENSMUSG00000023911 Flywch2 ENSMUST00000127144 ENSMUSP00000121741 TRANSLATION nonsense_mediated_decay - - 5 150.0 0.0 0.6 0.0 148.7 0.0 -4,-5 0.0387 3 -2.0 MINOR ENSMUSG00000023911 Flywch2 ENSMUST00000024704 ENSMUSP00000024704 TRANSLATION protein_coding - CCDS28464.1 1 139.0 0.0 0.6 3.4 148.7 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000013236 Ptprs ENSMUST00000223642 ENSMUSP00000153533 TRANSLATION protein_coding start/stop - - 208.0 0.0 4.55 0.0 43.8 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000013236 Ptprs ENSMUST00000223859 ENSMUSP00000153134 TRANSLATION protein_coding - - - 1497.0 12.0 21.032 4.6 837.7 2.0 3,-1 0.3335 26 8.0 MINOR ENSMUSG00000013236 Ptprs ENSMUST00000224571 - NO_TRANSLATION retained_intron ENSMUSG00000013236 Ptprs ENSMUST00000224522 - NO_TRANSLATION retained_intron ENSMUSG00000013236 Ptprs ENSMUST00000067538 ENSMUSP00000064048 TRANSLATION protein_coding - CCDS37664.1 1 1907.0 12.0 25.482 4.3 990.3 2.0 3,-1 1.0 29 19.834 PRINCIPAL:1 ENSMUSG00000013236 Ptprs ENSMUST00000224777 ENSMUSP00000153612 TRANSLATION protein_coding start/stop - - 208.0 0.0 1.502 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000013236 Ptprs ENSMUST00000225456 ENSMUSP00000153398 TRANSLATION protein_coding start/stop - - 448.0 0.0 6.978 0.0 162.9 0.0 -4,-6 0.0005 4 -2.0 MINOR ENSMUSG00000013236 Ptprs ENSMUST00000225379 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013236 Ptprs ENSMUST00000223783 - NO_TRANSLATION retained_intron ENSMUSG00000013236 Ptprs ENSMUST00000225104 - NO_TRANSLATION retained_intron ENSMUSG00000013236 Ptprs ENSMUST00000223706 - NO_TRANSLATION retained_intron ENSMUSG00000013236 Ptprs ENSMUST00000223691 - NO_TRANSLATION retained_intron ENSMUSG00000013236 Ptprs ENSMUST00000086828 ENSMUSP00000084038 TRANSLATION protein_coding - CCDS57103.1 1 1501.0 12.0 21.032 4.6 837.7 2.0 3,-1 0.3497 26 8.0 MINOR ENSMUSG00000013236 Ptprs ENSMUST00000143018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013236 Ptprs ENSMUST00000224006 - NO_TRANSLATION retained_intron ENSMUSG00000013236 Ptprs ENSMUST00000225785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013236 Ptprs ENSMUST00000224193 - NO_TRANSLATION retained_intron ENSMUSG00000013236 Ptprs ENSMUST00000223685 - NO_TRANSLATION retained_intron ENSMUSG00000013236 Ptprs ENSMUST00000225381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013236 Ptprs ENSMUST00000223742 ENSMUSP00000153335 TRANSLATION protein_coding stop - - 48.0 0.0 0.5 0.0 0.0 0.0 3,-1 0.0008 - -2.0 MINOR ENSMUSG00000013236 Ptprs ENSMUST00000223671 - NO_TRANSLATION retained_intron ENSMUSG00000061665 Cd2ap ENSMUST00000233350 - NO_TRANSLATION retained_intron ENSMUSG00000061665 Cd2ap ENSMUST00000233476 ENSMUSP00000156812 TRANSLATION protein_coding - - - 532.0 0.0 6.47 0.0 112.1 0.0 -4,-5 0.0002 22 6.648 MINOR ENSMUSG00000061665 Cd2ap ENSMUST00000233195 - NO_TRANSLATION retained_intron ENSMUSG00000061665 Cd2ap ENSMUST00000233123 - NO_TRANSLATION retained_intron ENSMUSG00000061665 Cd2ap ENSMUST00000024709 ENSMUSP00000024709 TRANSLATION protein_coding - CCDS50114.1 1 637.0 0.0 7.536 8.5 165.8 0.0 -4,-5 1.0 25 15.0 PRINCIPAL:1 ENSMUSG00000061665 Cd2ap ENSMUST00000233626 - NO_TRANSLATION retained_intron ENSMUSG00000067148 Polr1c ENSMUST00000124126 - NO_TRANSLATION retained_intron ENSMUSG00000067148 Polr1c ENSMUST00000173232 ENSMUSP00000133597 TRANSLATION nonsense_mediated_decay - - 5 103.0 0.0 3.0 0.0 38.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000067148 Polr1c ENSMUST00000174392 - NO_TRANSLATION retained_intron ENSMUSG00000067148 Polr1c ENSMUST00000173349 ENSMUSP00000133861 TRANSLATION protein_coding stop - 3 170.0 0.0 4.75 0.0 73.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000067148 Polr1c ENSMUST00000152583 - NO_TRANSLATION retained_intron ENSMUSG00000067148 Polr1c ENSMUST00000142706 ENSMUSP00000116998 TRANSLATION protein_coding stop - 5 255.0 0.0 6.5 0.0 135.0 0.0 -4,-6 0.0004 5 -2.0 MINOR ENSMUSG00000067148 Polr1c ENSMUST00000124655 ENSMUSP00000122026 TRANSLATION protein_coding - - 5 260.0 0.0 7.25 0.0 145.3 0.0 -4,-5 0.0018 4 4.47 MINOR ENSMUSG00000067148 Polr1c ENSMUST00000087026 ENSMUSP00000084252 TRANSLATION protein_coding - CCDS37632.1 1 346.0 0.0 9.75 28.1 187.5 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000049823 Zbtb12 ENSMUST00000052778 ENSMUSP00000057515 TRANSLATION protein_coding - CCDS28665.1 1 459.0 14.0 1.0 6.4 123.9 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000049823 Zbtb12 ENSMUST00000173093 ENSMUSP00000133903 TRANSLATION protein_coding stop - 2 68.0 0.0 1.0 0.0 46.6 0.0 -4,-6 0.0243 - -2.0 MINOR ENSMUSG00000047123 Ticam1 ENSMUST00000058136 ENSMUSP00000055104 TRANSLATION protein_coding - CCDS28900.1 1 732.0 0.0 0.2 0.0 38.8 0.0 -4,-6 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000043972 Opn5 ENSMUST00000068355 ENSMUSP00000063542 TRANSLATION protein_coding - CCDS37619.1 1 377.0 16.0 4.85 0.4 137.6 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000067341 H2-Eb2 ENSMUST00000050325 ENSMUSP00000056814 TRANSLATION protein_coding - CCDS28646.1 1 287.0 0.0 3.32 0.1 192.7 0.0 2,-3 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000034265 Zdhhc14 ENSMUST00000089185 ENSMUSP00000086589 TRANSLATION protein_coding - CCDS37422.1 1 489.0 4.0 5.8 16.8 127.5 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000023977 Ubr2 ENSMUST00000225751 - NO_TRANSLATION retained_intron ENSMUSG00000023977 Ubr2 ENSMUST00000224759 - NO_TRANSLATION retained_intron ENSMUSG00000023977 Ubr2 ENSMUST00000225599 ENSMUSP00000152895 TRANSLATION nonsense_mediated_decay - - - 178.0 11.0 1.95 0.0 78.7 0.0 -4,-5 0.0256 4 -2.0 MINOR ENSMUSG00000023977 Ubr2 ENSMUST00000113337 ENSMUSP00000108963 TRANSLATION protein_coding - CCDS28845.1 1 1755.0 15.0 1.95 13.1 158.2 0.0 -4,-5 1.0 26 18.0 PRINCIPAL:3 ENSMUSG00000023977 Ubr2 ENSMUST00000113335 ENSMUSP00000108961 TRANSLATION protein_coding - CCDS50127.1 1 1755.0 15.0 1.95 13.1 158.2 0.0 -4,-5 1.0 24 18.0 ALTERNATIVE:1 ENSMUSG00000023977 Ubr2 ENSMUST00000223860 - NO_TRANSLATION retained_intron ENSMUSG00000023977 Ubr2 ENSMUST00000224442 - NO_TRANSLATION retained_intron ENSMUSG00000023977 Ubr2 ENSMUST00000225712 - NO_TRANSLATION retained_intron ENSMUSG00000057835 Zfp119a ENSMUST00000079642 ENSMUSP00000078587 TRANSLATION protein_coding - CCDS37656.1 1 545.0 39.0 1.0 0.0 213.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000024177 Nme4 ENSMUST00000236967 ENSMUSP00000157701 TRANSLATION protein_coding start - - 166.0 9.0 3.73 0.0 124.4 0.0 -4,-6 0.0002 4 -2.0 MINOR ENSMUSG00000024177 Nme4 ENSMUST00000025007 ENSMUSP00000025007 TRANSLATION protein_coding - CCDS28544.1 1 186.0 10.0 4.33 8.9 182.1 0.0 -2,2 1.0 4 20.202 PRINCIPAL:1 ENSMUSG00000024177 Nme4 ENSMUST00000236128 ENSMUSP00000158571 TRANSLATION protein_coding - - - 169.0 7.0 3.396 0.0 65.8 0.0 -2,2 0.0006 2 7.338 MINOR ENSMUSG00000024177 Nme4 ENSMUST00000150280 - NO_TRANSLATION retained_intron ENSMUSG00000024177 Nme4 ENSMUST00000236547 ENSMUSP00000157943 TRANSLATION protein_coding - - - 203.0 11.0 4.396 0.0 171.8 0.0 -2,2 0.034 3 17.382 MINOR ENSMUSG00000024177 Nme4 ENSMUST00000236112 - NO_TRANSLATION retained_intron ENSMUSG00000024177 Nme4 ENSMUST00000235157 ENSMUSP00000157963 TRANSLATION protein_coding start - - 183.0 10.0 3.796 0.0 114.3 0.0 -4,-6 0.0151 3 -2.0 MINOR ENSMUSG00000013766 Ly6g6e ENSMUST00000172959 ENSMUSP00000133753 TRANSLATION protein_coding - - 1 166.0 0.0 1.33 0.0 31.7 0.0 3,-2 0.0597 - 9.426 MINOR ENSMUSG00000013766 Ly6g6e ENSMUST00000172494 ENSMUSP00000133645 TRANSLATION protein_coding - - 3 107.0 0.0 1.0 0.0 0.0 0.0 1,-2 0.0 - 2.574 MINOR ENSMUSG00000013766 Ly6g6e ENSMUST00000172678 ENSMUSP00000134073 TRANSLATION protein_coding - CCDS28679.1 3 134.0 0.0 2.33 1.9 28.2 0.0 2,-3 1.0 - 12.34 PRINCIPAL:1 ENSMUSG00000013766 Ly6g6e ENSMUST00000013910 ENSMUSP00000013910 TRANSLATION protein_coding - CCDS28679.1 1 134.0 0.0 2.33 1.9 28.2 0.0 2,-3 1.0 - 12.34 PRINCIPAL:1 ENSMUSG00000062012 Zfp13 ENSMUST00000228298 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062012 Zfp13 ENSMUST00000057029 ENSMUSP00000054595 TRANSLATION protein_coding - CCDS28450.1 1 505.0 32.0 1.0 0.0 239.1 0.0 -4,-5 0.541 - 14.0 ALTERNATIVE:2 ENSMUSG00000062012 Zfp13 ENSMUST00000228942 - NO_TRANSLATION retained_intron ENSMUSG00000062012 Zfp13 ENSMUST00000227952 ENSMUSP00000154342 TRANSLATION protein_coding stop - - 118.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062012 Zfp13 ENSMUST00000115516 ENSMUSP00000111178 TRANSLATION protein_coding - - 1 512.0 32.0 1.0 1.1 239.1 0.0 -4,-5 0.8376 - 15.0 PRINCIPAL:2 ENSMUSG00000071311 Gpr31b ENSMUST00000091648 ENSMUSP00000089237 TRANSLATION protein_coding - CCDS37438.1 - 319.0 0.0 0.48 1.1 101.3 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000023845 Lnpep ENSMUST00000232515 - NO_TRANSLATION retained_intron ENSMUSG00000023845 Lnpep ENSMUST00000231666 - NO_TRANSLATION retained_intron ENSMUSG00000023845 Lnpep ENSMUST00000231515 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023845 Lnpep ENSMUST00000232462 - NO_TRANSLATION retained_intron ENSMUSG00000023845 Lnpep ENSMUST00000041047 ENSMUSP00000036998 TRANSLATION protein_coding - CCDS37457.1 1 1025.0 12.0 16.19 15.9 506.5 0.0 -4,-5 1.0 27 22.0 PRINCIPAL:1 ENSMUSG00000023845 Lnpep ENSMUST00000231291 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060701 Fpr-rs3 ENSMUST00000071189 ENSMUSP00000071179 TRANSLATION protein_coding - CCDS49989.1 - 343.0 0.0 1.0 3.1 121.2 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000061126 Cyp4f39 ENSMUST00000237491 ENSMUSP00000158442 TRANSLATION protein_coding - CCDS28618.1 - 532.0 31.0 11.25 14.7 409.1 2.0 0,-4 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000061126 Cyp4f39 ENSMUST00000236005 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061126 Cyp4f39 ENSMUST00000236307 ENSMUSP00000157989 TRANSLATION protein_coding stop - - 105.0 0.0 2.0 0.0 0.0 1.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000061126 Cyp4f39 ENSMUST00000235903 - NO_TRANSLATION retained_intron ENSMUSG00000061126 Cyp4f39 ENSMUST00000003413 ENSMUSP00000003413 TRANSLATION protein_coding - CCDS28618.1 5 532.0 31.0 11.25 14.7 409.1 2.0 0,-4 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000003279 Dlgap1 ENSMUST00000133983 ENSMUSP00000116716 TRANSLATION protein_coding - CCDS84332.1 1 982.0 0.0 2.4 12.1 513.7 0.0 -4,-7 1.0 20 11.0 PRINCIPAL:3 ENSMUSG00000003279 Dlgap1 ENSMUST00000150798 - NO_TRANSLATION retained_intron ENSMUSG00000003279 Dlgap1 ENSMUST00000156946 - NO_TRANSLATION retained_intron ENSMUSG00000003279 Dlgap1 ENSMUST00000126801 - NO_TRANSLATION retained_intron ENSMUSG00000003279 Dlgap1 ENSMUST00000232998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003279 Dlgap1 ENSMUST00000146730 ENSMUSP00000116072 TRANSLATION protein_coding - - 1 944.0 0.0 2.4 1.3 378.1 0.0 -4,-7 0.1354 21 6.081 MINOR ENSMUSG00000003279 Dlgap1 ENSMUST00000135938 ENSMUSP00000118497 TRANSLATION protein_coding - CCDS84331.1 1 964.0 0.0 2.4 2.8 513.7 0.0 -4,-7 0.5756 19 8.486 MINOR ENSMUSG00000003279 Dlgap1 ENSMUST00000155016 ENSMUSP00000122896 TRANSLATION protein_coding - CCDS28953.1 1 992.0 0.0 2.4 6.9 513.7 0.0 -4,-7 0.8556 21 9.596 MINOR ENSMUSG00000003279 Dlgap1 ENSMUST00000133717 ENSMUSP00000122370 TRANSLATION protein_coding - CCDS84334.1 5 666.0 0.0 2.4 1.1 513.7 0.0 -4,-6 0.4415 10 8.027 MINOR ENSMUSG00000003279 Dlgap1 ENSMUST00000233780 - NO_TRANSLATION retained_intron ENSMUSG00000003279 Dlgap1 ENSMUST00000140728 ENSMUSP00000117358 TRANSLATION protein_coding - CCDS84333.1 5 692.0 0.0 2.4 0.0 513.7 0.0 -4,-5 0.241 12 8.0 MINOR ENSMUSG00000003279 Dlgap1 ENSMUST00000097288 ENSMUSP00000094890 TRANSLATION protein_coding - CCDS50173.1 1 636.0 0.0 2.4 1.0 378.1 0.0 -4,-6 0.1526 11 6.0 MINOR ENSMUSG00000003279 Dlgap1 ENSMUST00000125691 - NO_TRANSLATION retained_intron ENSMUSG00000003279 Dlgap1 ENSMUST00000233173 ENSMUSP00000156778 TRANSLATION protein_coding start - - 726.0 0.0 2.4 0.0 378.1 0.0 -4,-5 0.0242 15 -2.0 MINOR ENSMUSG00000003279 Dlgap1 ENSMUST00000233283 ENSMUSP00000156863 TRANSLATION protein_coding - - - 660.0 0.0 2.4 4.5 513.7 0.0 -4,-7 0.2783 8 8.945 MINOR ENSMUSG00000003279 Dlgap1 ENSMUST00000148486 ENSMUSP00000122337 TRANSLATION protein_coding - CCDS50172.1 1 682.0 0.0 2.4 9.5 513.7 0.0 -4,-5 0.8238 11 10.298 ALTERNATIVE:1 ENSMUSG00000003279 Dlgap1 ENSMUST00000060072 ENSMUSP00000052858 TRANSLATION protein_coding - CCDS84332.1 1 982.0 0.0 2.4 12.1 513.7 0.0 -4,-7 1.0 20 11.0 PRINCIPAL:3 ENSMUSG00000003279 Dlgap1 ENSMUST00000130971 - NO_TRANSLATION retained_intron ENSMUSG00000003279 Dlgap1 ENSMUST00000150260 - NO_TRANSLATION retained_intron ENSMUSG00000003279 Dlgap1 ENSMUST00000155823 - NO_TRANSLATION retained_intron ENSMUSG00000058392 Rrp1b ENSMUST00000151808 ENSMUSP00000123044 TRANSLATION nonsense_mediated_decay - - 5 118.0 0.0 1.0 0.0 76.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000058392 Rrp1b ENSMUST00000081339 ENSMUSP00000080085 TRANSLATION protein_coding - CCDS28613.1 1 724.0 0.0 3.378 0.0 232.8 0.0 -4,-2 1.0 15 12.0 PRINCIPAL:1 ENSMUSG00000058392 Rrp1b ENSMUST00000147076 - NO_TRANSLATION retained_intron ENSMUSG00000058392 Rrp1b ENSMUST00000126602 - NO_TRANSLATION retained_intron ENSMUSG00000058392 Rrp1b ENSMUST00000156164 - NO_TRANSLATION retained_intron ENSMUSG00000058392 Rrp1b ENSMUST00000136094 - NO_TRANSLATION retained_intron ENSMUSG00000058392 Rrp1b ENSMUST00000150187 - NO_TRANSLATION retained_intron ENSMUSG00000058392 Rrp1b ENSMUST00000237131 ENSMUSP00000158153 TRANSLATION nonsense_mediated_decay - - - 82.0 0.0 1.066 0.0 79.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000058392 Rrp1b ENSMUST00000137917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058392 Rrp1b ENSMUST00000238133 ENSMUSP00000157472 TRANSLATION nonsense_mediated_decay - - - 118.0 0.0 1.0 0.0 76.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000058392 Rrp1b ENSMUST00000236329 ENSMUSP00000157510 TRANSLATION nonsense_mediated_decay - - - 118.0 0.0 1.0 0.0 76.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000058392 Rrp1b ENSMUST00000149746 - NO_TRANSLATION retained_intron ENSMUSG00000058392 Rrp1b ENSMUST00000150469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058392 Rrp1b ENSMUST00000236425 ENSMUSP00000157786 TRANSLATION nonsense_mediated_decay start - - 122.0 0.0 1.38 0.0 88.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000058392 Rrp1b ENSMUST00000150151 - NO_TRANSLATION retained_intron ENSMUSG00000101959 Ldhal6b ENSMUST00000189788 ENSMUSP00000139572 TRANSLATION protein_coding - CCDS79501.1 - 382.0 25.0 1.0 7.0 225.6 0.0 -4,0 1.0 13 20.0 PRINCIPAL:1 ENSMUSG00000036594 H2-Aa ENSMUST00000165139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036594 H2-Aa ENSMUST00000174751 ENSMUSP00000133399 TRANSLATION protein_coding - - 3 173.0 0.0 2.3 0.0 81.3 1.0 3,-2 0.0015 3 4.002 MINOR ENSMUSG00000036594 H2-Aa ENSMUST00000173944 - NO_TRANSLATION retained_intron ENSMUSG00000036594 H2-Aa ENSMUST00000040655 ENSMUSP00000046105 TRANSLATION protein_coding - CCDS28645.1 1 256.0 0.0 3.3 10.8 206.7 1.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000051682 Treml4 ENSMUST00000153131 - NO_TRANSLATION retained_intron ENSMUSG00000051682 Treml4 ENSMUST00000154335 ENSMUSP00000118772 TRANSLATION protein_coding - CCDS50139.1 1 264.0 0.0 1.514 0.0 44.4 2.0 1,-2 0.5651 1 5.748 ALTERNATIVE:2 ENSMUSG00000051682 Treml4 ENSMUST00000125426 ENSMUSP00000119177 TRANSLATION protein_coding - CCDS50141.1 1 259.0 0.0 1.58 0.0 44.4 2.0 4,-1 0.6198 1 6.0 ALTERNATIVE:2 ENSMUSG00000051682 Treml4 ENSMUST00000059873 ENSMUSP00000054121 TRANSLATION protein_coding - CCDS28862.1 1 263.0 0.0 1.58 0.0 44.4 2.0 1,-2 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000051682 Treml4 ENSMUST00000136272 ENSMUSP00000120550 TRANSLATION protein_coding - CCDS50140.1 1 255.0 0.0 1.25 0.0 44.4 2.0 1,-2 0.3 1 4.746 MINOR ENSMUSG00000051682 Treml4 ENSMUST00000153420 ENSMUSP00000115290 TRANSLATION protein_coding stop - 1 223.0 0.0 1.58 0.0 44.4 0.0 1,-2 0.0999 - -2.0 MINOR ENSMUSG00000024041 Cryaa ENSMUST00000227620 - NO_TRANSLATION retained_intron ENSMUSG00000024041 Cryaa ENSMUST00000228716 ENSMUSP00000154747 TRANSLATION protein_coding - - - 173.0 0.0 3.0 32.8 170.9 0.0 -4,-6 1.0 11 15.604 PRINCIPAL:1 ENSMUSG00000024041 Cryaa ENSMUST00000226183 - NO_TRANSLATION retained_intron ENSMUSG00000024041 Cryaa ENSMUST00000019192 ENSMUSP00000019192 TRANSLATION protein_coding - CCDS37551.1 1 196.0 0.0 3.0 3.7 170.9 0.0 -4,-7 0.2386 10 11.944 MINOR ENSMUSG00000024041 Cryaa ENSMUST00000228089 ENSMUSP00000157708 TRANSLATION protein_coding - - - 202.0 0.0 3.198 3.7 170.9 0.0 -4,-6 0.1788 10 12.34 MINOR ENSMUSG00000024041 Cryaa ENSMUST00000228305 - NO_TRANSLATION retained_intron ENSMUSG00000054901 Arhgef33 ENSMUST00000225548 ENSMUSP00000153111 TRANSLATION protein_coding - - - 81.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000054901 Arhgef33 ENSMUST00000224966 ENSMUSP00000153018 TRANSLATION protein_coding - - - 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000054901 Arhgef33 ENSMUST00000224631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054901 Arhgef33 ENSMUST00000226013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054901 Arhgef33 ENSMUST00000225658 ENSMUSP00000153062 TRANSLATION protein_coding - - - 62.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000054901 Arhgef33 ENSMUST00000224002 - NO_TRANSLATION retained_intron ENSMUSG00000054901 Arhgef33 ENSMUST00000225018 - NO_TRANSLATION retained_intron ENSMUSG00000054901 Arhgef33 ENSMUST00000224676 - NO_TRANSLATION retained_intron ENSMUSG00000054901 Arhgef33 ENSMUST00000068175 ENSMUSP00000063284 TRANSLATION protein_coding - CCDS50189.1 5 850.0 0.0 0.0 0.4 51.4 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000054901 Arhgef33 ENSMUST00000225223 ENSMUSP00000153484 TRANSLATION protein_coding - - - 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000054901 Arhgef33 ENSMUST00000223878 ENSMUSP00000153224 TRANSLATION protein_coding - CCDS50189.1 - 850.0 0.0 0.0 0.4 51.4 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000054901 Arhgef33 ENSMUST00000224391 ENSMUSP00000153551 TRANSLATION protein_coding stop - - 143.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037104 Socs5 ENSMUST00000041369 ENSMUSP00000038591 TRANSLATION protein_coding - CCDS29014.1 1 536.0 0.0 0.8 22.7 133.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037104 Socs5 ENSMUST00000234421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037104 Socs5 ENSMUST00000234803 ENSMUSP00000157177 TRANSLATION protein_coding stop - - 203.0 0.0 0.0 0.0 62.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024225 Clps ENSMUST00000025062 ENSMUSP00000025062 TRANSLATION protein_coding - CCDS28581.1 1 113.0 0.0 2.375 9.9 187.7 0.0 4,-1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000024225 Clps ENSMUST00000114785 ENSMUSP00000110433 TRANSLATION protein_coding - CCDS84287.1 2 72.0 0.0 1.375 2.2 85.2 0.0 4,-1 0.0571 2 3.879 MINOR ENSMUSG00000024160 Spsb3 ENSMUST00000120943 ENSMUSP00000112492 TRANSLATION protein_coding - - 1 354.0 0.0 4.4 10.4 67.4 0.0 -4,0 1.0 - 14.754 PRINCIPAL:1 ENSMUSG00000024160 Spsb3 ENSMUST00000117890 ENSMUSP00000112380 TRANSLATION protein_coding - - 1 354.0 0.0 4.4 10.4 67.4 0.0 -4,0 1.0 - 14.754 PRINCIPAL:1 ENSMUSG00000024160 Spsb3 ENSMUST00000130194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024160 Spsb3 ENSMUST00000144430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024160 Spsb3 ENSMUST00000119829 ENSMUSP00000112589 TRANSLATION protein_coding - - 2 379.0 0.0 4.52375 0.1 56.8 0.0 -4,0 0.0563 - 11.058 MINOR ENSMUSG00000024160 Spsb3 ENSMUST00000024976 ENSMUSP00000024976 TRANSLATION protein_coding - - 1 381.0 0.0 4.4 0.0 67.4 0.0 -2,-7 0.0387 - 11.754 MINOR ENSMUSG00000024160 Spsb3 ENSMUST00000068508 ENSMUSP00000068567 TRANSLATION protein_coding - - 1 328.0 0.0 3.1 0.0 50.5 0.0 -4,0 0.0033 - 7.644 MINOR ENSMUSG00000024160 Spsb3 ENSMUST00000134932 - NO_TRANSLATION retained_intron ENSMUSG00000092618 Btnl6 ENSMUST00000173164 - NO_TRANSLATION unprocessed_pseudogene ENSMUSG00000092618 Btnl6 ENSMUST00000075483 ENSMUSP00000074927 TRANSLATION protein_coding - CCDS50078.1 5 539.0 0.0 3.706 0.0 106.6 0.0 -1,-4 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000091043 Glyatl3 ENSMUST00000166343 ENSMUSP00000125916 TRANSLATION protein_coding - CCDS50111.1 5 290.0 19.0 4.75 9.8 305.1 0.0 -4,-6 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000023918 Adgrf4 ENSMUST00000170723 ENSMUSP00000133261 TRANSLATION protein_coding - CCDS50113.1 1 698.0 0.0 0.675 6.3 148.7 7.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000023918 Adgrf4 ENSMUST00000164524 ENSMUSP00000129114 TRANSLATION protein_coding stop - 3 67.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0012 - -2.0 MINOR ENSMUSG00000023918 Adgrf4 ENSMUST00000167993 ENSMUSP00000132890 TRANSLATION protein_coding - CCDS50113.1 1 698.0 0.0 0.675 6.3 148.7 7.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000023918 Adgrf4 ENSMUST00000024711 ENSMUSP00000024711 TRANSLATION protein_coding - CCDS50113.1 1 698.0 0.0 0.675 6.3 148.7 7.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000015478 Rnf5 ENSMUST00000015622 ENSMUSP00000015622 TRANSLATION protein_coding - CCDS28650.1 1 180.0 8.0 1.35 1.3 39.7 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000015478 Rnf5 ENSMUST00000174475 - NO_TRANSLATION retained_intron ENSMUSG00000015478 Rnf5 ENSMUST00000174045 - NO_TRANSLATION retained_intron ENSMUSG00000091771 Vmn2r103 ENSMUST00000172203 ENSMUSP00000126756 TRANSLATION protein_coding - CCDS49980.1 5 856.0 4.0 2.26 0.1 391.1 0.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000067144 Slc22a7 ENSMUST00000233575 ENSMUSP00000156887 TRANSLATION protein_coding stop - - 169.0 0.0 2.382 0.0 51.2 6.0 -4,-5 0.006 - -2.0 MINOR ENSMUSG00000067144 Slc22a7 ENSMUST00000087012 ENSMUSP00000084234 TRANSLATION protein_coding - CCDS28829.1 1 540.0 0.0 6.385 0.0 115.5 15.0 -4,-7 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000067144 Slc22a7 ENSMUST00000233715 ENSMUSP00000156640 TRANSLATION protein_coding - - - 416.0 0.0 5.555 0.0 111.2 15.0 -4,-6 0.0412 - 10.08 MINOR ENSMUSG00000001524 Gtf2h4 ENSMUST00000162266 ENSMUSP00000124103 TRANSLATION protein_coding stop - 3 91.0 0.0 2.58 0.0 71.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000001524 Gtf2h4 ENSMUST00000160734 ENSMUSP00000124335 TRANSLATION protein_coding - CCDS28702.1 5 463.0 0.0 12.41 11.8 456.3 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000001524 Gtf2h4 ENSMUST00000160752 ENSMUSP00000124458 TRANSLATION nonsense_mediated_decay - - 5 184.0 0.0 3.7285 0.0 100.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000001524 Gtf2h4 ENSMUST00000162604 - NO_TRANSLATION retained_intron ENSMUSG00000001524 Gtf2h4 ENSMUST00000159852 ENSMUSP00000124060 TRANSLATION protein_coding stop - 3 61.0 0.0 1.5 0.0 43.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000001524 Gtf2h4 ENSMUST00000001565 ENSMUSP00000001565 TRANSLATION protein_coding - CCDS28702.1 1 463.0 0.0 12.41 11.8 456.3 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000001524 Gtf2h4 ENSMUST00000162894 - NO_TRANSLATION retained_intron ENSMUSG00000001524 Gtf2h4 ENSMUST00000159671 - NO_TRANSLATION retained_intron ENSMUSG00000001524 Gtf2h4 ENSMUST00000162927 - NO_TRANSLATION retained_intron ENSMUSG00000001524 Gtf2h4 ENSMUST00000160039 ENSMUSP00000124683 TRANSLATION protein_coding stop - 3 164.0 0.0 4.91 0.0 135.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000001524 Gtf2h4 ENSMUST00000160711 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001524 Gtf2h4 ENSMUST00000160535 - NO_TRANSLATION retained_intron ENSMUSG00000024164 C3 ENSMUST00000177425 ENSMUSP00000135663 TRANSLATION protein_coding start - 3 102.0 3.0 2.83 0.0 37.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024164 C3 ENSMUST00000177046 ENSMUSP00000135560 TRANSLATION protein_coding start/stop - 5 185.0 0.0 5.0 0.0 76.8 0.0 2,-4 0.0 7 -2.0 MINOR ENSMUSG00000024164 C3 ENSMUST00000024988 ENSMUSP00000024988 TRANSLATION protein_coding - CCDS37670.1 1 1663.0 5.0 38.11 3.8 740.4 0.0 4,-1 1.0 80 18.0 PRINCIPAL:1 ENSMUSG00000024164 C3 ENSMUST00000176457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003206 Ebi3 ENSMUST00000003274 ENSMUSP00000003274 TRANSLATION protein_coding - CCDS28888.1 1 228.0 0.0 4.12375 2.0 23.4 0.0 0,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000040888 Gfer ENSMUST00000234859 ENSMUSP00000157365 TRANSLATION protein_coding - - - 77.0 15.0 1.75 0.0 68.5 0.0 -4,-5 0.0 2 8.826 MINOR ENSMUSG00000040888 Gfer ENSMUST00000234520 ENSMUSP00000157116 TRANSLATION nonsense_mediated_decay - CCDS28492.1 - 198.0 22.0 3.08 4.8 99.0 0.0 -4,-2 1.0 - -2.0 MINOR ENSMUSG00000040888 Gfer ENSMUST00000234811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040888 Gfer ENSMUST00000234197 ENSMUSP00000157329 TRANSLATION nonsense_mediated_decay - CCDS28492.1 - 198.0 22.0 3.08 4.8 99.0 0.0 -4,-2 1.0 6 -2.0 MINOR ENSMUSG00000040888 Gfer ENSMUST00000234235 ENSMUSP00000157249 TRANSLATION protein_coding - - - 187.0 22.0 2.75 0.7 99.0 0.0 -4,-2 0.1235 6 17.34 MINOR ENSMUSG00000040888 Gfer ENSMUST00000046839 ENSMUSP00000049186 TRANSLATION protein_coding - CCDS28492.1 1 198.0 22.0 3.08 4.8 99.0 0.0 -4,-2 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000023951 Vegfa ENSMUST00000142321 - NO_TRANSLATION retained_intron ENSMUSG00000023951 Vegfa ENSMUST00000024747 ENSMUSP00000024747 TRANSLATION protein_coding - CCDS70817.1 1 146.0 0.0 2.51 14.1 94.9 0.0 4,-1 0.8104 1 8.098 MINOR ENSMUSG00000023951 Vegfa ENSMUST00000113519 ENSMUSP00000109147 TRANSLATION protein_coding - - 5 170.0 0.0 2.51 5.3 94.9 0.0 4,-1 0.1043 1 5.41 MINOR ENSMUSG00000023951 Vegfa ENSMUST00000146149 - NO_TRANSLATION retained_intron ENSMUSG00000023951 Vegfa ENSMUST00000142351 ENSMUSP00000115883 TRANSLATION protein_coding - CCDS28816.2 1 392.0 0.0 3.095 1.1 192.9 0.0 -4,-7 0.2112 5 11.18 MINOR ENSMUSG00000023951 Vegfa ENSMUST00000133605 - NO_TRANSLATION retained_intron ENSMUSG00000023951 Vegfa ENSMUST00000150327 - NO_TRANSLATION retained_intron ENSMUSG00000023951 Vegfa ENSMUST00000071648 ENSMUSP00000071575 TRANSLATION protein_coding - CCDS28818.2 1 368.0 0.0 3.51 1.1 193.3 0.0 -4,-7 0.5332 5 12.032 MINOR ENSMUSG00000023951 Vegfa ENSMUST00000143985 - NO_TRANSLATION retained_intron ENSMUSG00000023951 Vegfa ENSMUST00000113520 ENSMUSP00000109148 TRANSLATION protein_coding - - 5 208.0 0.0 3.26 13.4 192.3 0.0 4,-1 1.0 2 15.23 PRINCIPAL:1 ENSMUSG00000040828 Catsperd ENSMUST00000233947 ENSMUSP00000156886 TRANSLATION protein_coding start - - 505.0 0.0 0.0 0.0 630.9 1.0 -4,-6 0.0188 2 -2.0 MINOR ENSMUSG00000040828 Catsperd ENSMUST00000112979 ENSMUSP00000108603 TRANSLATION protein_coding - CCDS50153.1 1 805.0 0.0 0.0 0.0 1227.9 1.0 4,2 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000040828 Catsperd ENSMUST00000232838 - NO_TRANSLATION retained_intron ENSMUSG00000095104 Esp15 ENSMUST00000178929 ENSMUSP00000137292 TRANSLATION protein_coding - CCDS57090.1 1 85.0 0.0 0.0 0.0 79.7 0.0 2,-3 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000024066 Xdh ENSMUST00000233162 - NO_TRANSLATION retained_intron ENSMUSG00000024066 Xdh ENSMUST00000232957 - NO_TRANSLATION retained_intron ENSMUSG00000024066 Xdh ENSMUST00000233621 ENSMUSP00000156944 TRANSLATION nonsense_mediated_decay - - - 44.0 0.0 1.415 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024066 Xdh ENSMUST00000233433 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024066 Xdh ENSMUST00000232783 ENSMUSP00000156753 TRANSLATION nonsense_mediated_decay start - - 40.0 0.0 1.415 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024066 Xdh ENSMUST00000232717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024066 Xdh ENSMUST00000232843 - NO_TRANSLATION retained_intron ENSMUSG00000024066 Xdh ENSMUST00000024866 ENSMUSP00000024866 TRANSLATION protein_coding - CCDS28967.1 1 1335.0 109.0 31.25 0.0 1201.8 0.0 -4,-5 1.0 37 18.0 PRINCIPAL:1 ENSMUSG00000024066 Xdh ENSMUST00000233807 - NO_TRANSLATION retained_intron ENSMUSG00000024066 Xdh ENSMUST00000233392 ENSMUSP00000156860 TRANSLATION protein_coding start - - 409.0 23.0 9.45 0.0 353.3 0.0 -4,-5 0.002 8 -2.0 MINOR ENSMUSG00000024066 Xdh ENSMUST00000233946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024066 Xdh ENSMUST00000233570 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024066 Xdh ENSMUST00000233352 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024066 Xdh ENSMUST00000233449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033855 Ston1 ENSMUST00000153613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033855 Ston1 ENSMUST00000132384 - NO_TRANSLATION retained_intron ENSMUSG00000033855 Ston1 ENSMUST00000163588 ENSMUSP00000131703 TRANSLATION protein_coding - CCDS50207.1 1 730.0 0.0 0.166 5.1 207.9 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000033855 Ston1 ENSMUST00000112216 - NO_TRANSLATION retained_intron ENSMUSG00000033855 Ston1 ENSMUST00000137138 ENSMUSP00000118522 TRANSLATION protein_coding stop - 2 220.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 4 -2.0 MINOR ENSMUSG00000033855 Ston1 ENSMUST00000150023 ENSMUSP00000122928 TRANSLATION protein_coding - CCDS50207.1 2 730.0 0.0 0.166 5.1 207.9 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000033855 Ston1 ENSMUST00000064035 ENSMUSP00000067027 TRANSLATION protein_coding - CCDS50207.1 2 730.0 0.0 0.166 5.1 207.9 0.0 -4,-5 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000096445 Dcpp1 ENSMUST00000068580 ENSMUSP00000064663 TRANSLATION protein_coding - CCDS37478.1 2 171.0 0.0 2.0 0.0 0.0 0.0 4,-1 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000096696 Zfp960 ENSMUST00000127027 ENSMUSP00000123102 TRANSLATION protein_coding - CCDS49964.1 1 546.0 59.0 1.15 0.0 285.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000091679 Vmn2r96 ENSMUST00000231286 ENSMUSP00000156012 TRANSLATION nonsense_mediated_decay - - - 856.0 4.0 3.4 0.1 382.0 6.0 1,-4 0.9091 - -2.0 MINOR ENSMUSG00000091679 Vmn2r96 ENSMUST00000165692 ENSMUSP00000131564 TRANSLATION protein_coding - CCDS49974.1 5 664.0 4.0 1.6 0.7 334.8 6.0 -2,-4 0.0652 - 9.568 MINOR ENSMUSG00000091679 Vmn2r96 ENSMUST00000177244 ENSMUSP00000135095 TRANSLATION protein_coding - - 5 856.0 4.0 3.4 0.1 382.0 6.0 1,-4 0.9091 - 16.0 PRINCIPAL:1 ENSMUSG00000091679 Vmn2r96 ENSMUST00000231261 ENSMUSP00000156268 TRANSLATION nonsense_mediated_decay - - - 75.0 0.0 0.1 0.0 0.0 0.0 1,-4 0.0031 - -2.0 MINOR ENSMUSG00000001576 Ergic1 ENSMUST00000236481 - NO_TRANSLATION retained_intron ENSMUSG00000001576 Ergic1 ENSMUST00000165021 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001576 Ergic1 ENSMUST00000235915 ENSMUSP00000158266 TRANSLATION protein_coding - - - 198.0 0.0 6.0 4.1 124.0 1.0 -4,-5 0.0323 10 2.326 MINOR ENSMUSG00000001576 Ergic1 ENSMUST00000165802 - NO_TRANSLATION retained_intron ENSMUSG00000001576 Ergic1 ENSMUST00000236642 ENSMUSP00000157805 TRANSLATION nonsense_mediated_decay - - - 138.0 0.0 3.08 0.0 123.2 1.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000001576 Ergic1 ENSMUST00000167070 ENSMUSP00000127158 TRANSLATION protein_coding - - 3 191.0 0.0 5.0 0.0 94.3 0.0 -4,-5 0.0 10 0.0 MINOR ENSMUSG00000001576 Ergic1 ENSMUST00000001619 ENSMUSP00000158222 TRANSLATION protein_coding stop - 5 100.0 0.0 3.08 0.0 42.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000001576 Ergic1 ENSMUST00000235653 ENSMUSP00000157704 TRANSLATION nonsense_mediated_decay - - - 46.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001576 Ergic1 ENSMUST00000167662 ENSMUSP00000132922 TRANSLATION protein_coding - CCDS28553.1 1 290.0 0.0 8.08 26.7 248.4 2.0 -4,-7 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000001576 Ergic1 ENSMUST00000236163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001576 Ergic1 ENSMUST00000170640 ENSMUSP00000126282 TRANSLATION nonsense_mediated_decay - - 3 138.0 0.0 3.08 0.0 123.2 1.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001576 Ergic1 ENSMUST00000237902 ENSMUSP00000157890 TRANSLATION nonsense_mediated_decay - - - 46.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001576 Ergic1 ENSMUST00000163213 ENSMUSP00000158129 TRANSLATION protein_coding - - 5 247.0 0.0 7.462 0.0 171.1 1.0 -4,-5 0.0008 10 6.126 MINOR ENSMUSG00000001576 Ergic1 ENSMUST00000235197 ENSMUSP00000158354 TRANSLATION nonsense_mediated_decay - - - 46.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024241 Sos1 ENSMUST00000068714 ENSMUSP00000067786 TRANSLATION protein_coding - CCDS37704.1 2 1319.0 0.0 18.7 13.6 421.7 0.0 -4,-5 1.0 25 16.0 PRINCIPAL:1 ENSMUSG00000024241 Sos1 ENSMUST00000234841 - NO_TRANSLATION retained_intron ENSMUSG00000003541 Ier3 ENSMUST00000003635 ENSMUSP00000003635 TRANSLATION protein_coding - CCDS28704.1 1 160.0 0.0 0.4 10.3 0.0 0.0 -4,-1 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000053375 Atp6v1e2 ENSMUST00000235110 ENSMUSP00000157068 TRANSLATION protein_coding - CCDS29009.1 - 226.0 0.0 1.0 34.9 220.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000053375 Atp6v1e2 ENSMUST00000065758 ENSMUSP00000065285 TRANSLATION protein_coding - CCDS29009.1 1 226.0 0.0 1.0 34.9 220.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000053375 Atp6v1e2 ENSMUST00000233995 ENSMUSP00000157221 TRANSLATION protein_coding - CCDS29009.1 - 226.0 0.0 1.0 34.9 220.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000007038 Neu1 ENSMUST00000174715 - NO_TRANSLATION retained_intron ENSMUSG00000007038 Neu1 ENSMUST00000173269 - NO_TRANSLATION retained_intron ENSMUSG00000007038 Neu1 ENSMUST00000007253 ENSMUSP00000007253 TRANSLATION protein_coding - CCDS28668.1 1 409.0 4.0 5.0 0.1 169.2 0.0 -1,-4 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000118471 Gm50461 ENSMUST00000238764 ENSMUSP00000158753 TRANSLATION nonsense_mediated_decay,RT - - - 84.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - -2.0 PRINCIPAL:1 ENSMUSG00000034165 Ccnd3 ENSMUST00000182539 ENSMUSP00000138458 TRANSLATION protein_coding - - 2 96.0 0.0 3.188 6.1 34.6 0.0 -2,-3 0.1255 3 0.976 MINOR ENSMUSG00000034165 Ccnd3 ENSMUST00000037333 ENSMUSP00000040488 TRANSLATION protein_coding - CCDS28850.1 1 292.0 0.0 7.848 21.9 182.2 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000034165 Ccnd3 ENSMUST00000183206 ENSMUSP00000138745 TRANSLATION protein_coding stop - 3 29.0 0.0 0.83 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000034165 Ccnd3 ENSMUST00000183256 ENSMUSP00000138528 TRANSLATION protein_coding stop - 5 75.0 0.0 2.74 0.0 35.3 0.0 -2,-3 0.0 2 -2.0 MINOR ENSMUSG00000034165 Ccnd3 ENSMUST00000182060 - NO_TRANSLATION retained_intron ENSMUSG00000034165 Ccnd3 ENSMUST00000183158 ENSMUSP00000138169 TRANSLATION protein_coding stop - 2 99.0 0.0 2.16 0.0 92.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034165 Ccnd3 ENSMUST00000183044 ENSMUSP00000138220 TRANSLATION protein_coding - CCDS28850.1 1 292.0 0.0 7.848 21.9 182.2 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000034165 Ccnd3 ENSMUST00000183061 - NO_TRANSLATION retained_intron ENSMUSG00000034165 Ccnd3 ENSMUST00000182935 ENSMUSP00000138273 TRANSLATION protein_coding stop - 3 43.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034165 Ccnd3 ENSMUST00000182591 - NO_TRANSLATION retained_intron ENSMUSG00000034165 Ccnd3 ENSMUST00000182209 ENSMUSP00000138091 TRANSLATION protein_coding - CCDS28850.1 1 292.0 0.0 7.848 21.9 182.2 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000034165 Ccnd3 ENSMUST00000182129 ENSMUSP00000138486 TRANSLATION protein_coding stop - 5 214.0 0.0 5.16 0.0 157.0 0.0 -4,-6 0.0012 2 -2.0 MINOR ENSMUSG00000034165 Ccnd3 ENSMUST00000182874 ENSMUSP00000138711 TRANSLATION protein_coding stop - 5 119.0 0.0 3.33 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000034165 Ccnd3 ENSMUST00000183014 - NO_TRANSLATION retained_intron ENSMUSG00000034165 Ccnd3 ENSMUST00000182848 ENSMUSP00000138715 TRANSLATION protein_coding stop - 5 243.0 0.0 6.32 0.0 171.3 0.0 -4,-6 0.0008 2 -2.0 MINOR ENSMUSG00000034165 Ccnd3 ENSMUST00000171031 ENSMUSP00000126141 TRANSLATION protein_coding - CCDS28850.1 5 292.0 0.0 7.848 21.9 182.2 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000034165 Ccnd3 ENSMUST00000182506 ENSMUSP00000138180 TRANSLATION protein_coding stop - 5 250.0 0.0 6.65 0.0 179.0 0.0 -4,-6 0.0024 2 -2.0 MINOR ENSMUSG00000034165 Ccnd3 ENSMUST00000182281 - NO_TRANSLATION retained_intron ENSMUSG00000034165 Ccnd3 ENSMUST00000183177 ENSMUSP00000138640 TRANSLATION protein_coding - CCDS28850.1 5 292.0 0.0 7.848 21.9 182.2 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000034165 Ccnd3 ENSMUST00000182846 ENSMUSP00000138334 TRANSLATION protein_coding start - 3 125.0 0.0 2.778 0.0 81.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034165 Ccnd3 ENSMUST00000183210 ENSMUSP00000138658 TRANSLATION protein_coding stop - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000066878 Kpna2rt ENSMUST00000086423 ENSMUSP00000137310 TRANSLATION protein_coding - - - 529.0 0.0 1.0 27.9 472.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091076 Vmn2r115 ENSMUST00000234552 - NO_TRANSLATION retained_intron ENSMUSG00000091076 Vmn2r115 ENSMUST00000168175 ENSMUSP00000131447 TRANSLATION protein_coding - CCDS50008.1 1 857.0 4.0 2.65 0.1 363.4 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091076 Vmn2r115 ENSMUST00000234796 ENSMUSP00000157377 TRANSLATION protein_coding - - - 550.0 0.0 0.65 0.0 102.6 0.0 4,-1 0.0006 - 1.47 MINOR ENSMUSG00000039154 Shd ENSMUST00000233858 - NO_TRANSLATION retained_intron ENSMUSG00000039154 Shd ENSMUST00000224021 - NO_TRANSLATION retained_intron ENSMUSG00000039154 Shd ENSMUST00000223687 - NO_TRANSLATION retained_intron ENSMUSG00000039154 Shd ENSMUST00000225145 ENSMUSP00000153663 TRANSLATION protein_coding - - - 124.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 0.0 MINOR ENSMUSG00000039154 Shd ENSMUST00000223629 ENSMUSP00000153605 TRANSLATION protein_coding - CCDS50149.1 - 344.0 0.0 2.2 0.1 52.1 0.0 -4,-2 0.7865 5 8.0 PRINCIPAL:4 ENSMUSG00000039154 Shd ENSMUST00000044216 ENSMUSP00000047656 TRANSLATION protein_coding - - 1 343.0 0.0 2.2 0.1 52.1 0.0 -4,-2 0.7805 5 8.0 ALTERNATIVE:2 ENSMUSG00000039154 Shd ENSMUST00000223841 - NO_TRANSLATION retained_intron ENSMUSG00000024151 Msh2 ENSMUST00000174240 - NO_TRANSLATION retained_intron ENSMUSG00000024151 Msh2 ENSMUST00000173097 - NO_TRANSLATION retained_intron ENSMUSG00000024151 Msh2 ENSMUST00000172855 ENSMUSP00000133650 TRANSLATION protein_coding start/stop - 5 210.0 0.0 2.8 0.0 96.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000024151 Msh2 ENSMUST00000024967 ENSMUSP00000024967 TRANSLATION protein_coding - CCDS29019.1 1 935.0 13.0 15.73 16.0 633.2 0.0 -4,-5 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000024151 Msh2 ENSMUST00000172596 - NO_TRANSLATION retained_intron ENSMUSG00000024151 Msh2 ENSMUST00000174703 ENSMUSP00000133488 TRANSLATION nonsense_mediated_decay start - 5 68.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002250 Ppard ENSMUST00000232879 ENSMUSP00000156879 TRANSLATION protein_coding - - - 342.0 0.0 4.0 0.0 65.4 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000002250 Ppard ENSMUST00000002320 ENSMUSP00000002320 TRANSLATION protein_coding - CCDS28575.1 1 440.0 8.0 6.0 3.3 162.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:2 ENSMUSG00000002250 Ppard ENSMUST00000233383 - NO_TRANSLATION retained_intron ENSMUSG00000002250 Ppard ENSMUST00000169040 ENSMUSP00000133077 TRANSLATION protein_coding stop - 3 252.0 8.0 4.0 0.0 97.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002250 Ppard ENSMUST00000166744 ENSMUSP00000156734 TRANSLATION protein_coding - - 5 382.0 8.0 6.0 1.2 162.0 0.0 -4,-5 0.2254 - 14.087 ALTERNATIVE:2 ENSMUSG00000002250 Ppard ENSMUST00000142226 - NO_TRANSLATION retained_intron ENSMUSG00000002250 Ppard ENSMUST00000123020 - NO_TRANSLATION retained_intron ENSMUSG00000002250 Ppard ENSMUST00000233761 - NO_TRANSLATION retained_intron ENSMUSG00000002250 Ppard ENSMUST00000144200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046711 Hmga1 ENSMUST00000118599 ENSMUSP00000113015 TRANSLATION protein_coding - CCDS28564.1 3 107.0 0.0 0.75 9.8 30.5 0.0 -4,-5 0.7787 - 9.872 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000231874 ENSMUSP00000156199 TRANSLATION protein_coding - CCDS28564.1 - 107.0 0.0 0.75 9.8 30.5 0.0 -4,-5 0.7787 - 9.872 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000117600 ENSMUSP00000113068 TRANSLATION protein_coding - - 1 106.0 0.0 0.75 9.8 30.5 0.0 -4,-5 0.6176 - 9.872 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000232253 ENSMUSP00000155874 TRANSLATION protein_coding - - - 106.0 0.0 0.75 9.8 30.5 0.0 -4,-5 0.6176 - 9.872 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000231796 ENSMUSP00000155922 TRANSLATION protein_coding - - - 111.0 0.0 0.75 9.8 30.5 0.0 -4,-5 0.6134 - 9.872 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000118570 ENSMUSP00000114101 TRANSLATION protein_coding - CCDS50044.1 1 96.0 0.0 0.75 19.8 30.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000046711 Hmga1 ENSMUST00000232013 ENSMUSP00000155886 TRANSLATION protein_coding - CCDS28564.1 - 107.0 0.0 0.75 9.8 30.5 0.0 -4,-5 0.7787 - 9.872 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000231358 ENSMUSP00000155876 TRANSLATION protein_coding - CCDS50044.1 - 96.0 0.0 0.75 19.8 30.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000046711 Hmga1 ENSMUST00000231866 ENSMUSP00000155966 TRANSLATION protein_coding - - - 118.0 0.0 0.75 0.1 19.1 0.0 -4,-5 0.0363 1 7.334 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000231243 ENSMUSP00000155919 TRANSLATION protein_coding - - - 118.0 0.0 0.0 0.0 10.0 0.0 -4,-5 0.0006 1 0.666 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000231825 ENSMUSP00000156327 TRANSLATION protein_coding - CCDS50044.1 - 96.0 0.0 0.75 19.8 30.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000046711 Hmga1 ENSMUST00000231780 ENSMUSP00000155964 TRANSLATION protein_coding - - - 87.0 0.0 0.75 0.0 30.5 0.0 -4,-5 0.034 1 8.0 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000119486 ENSMUSP00000113916 TRANSLATION protein_coding - CCDS28564.1 2 107.0 0.0 0.75 9.8 30.5 0.0 -4,-5 0.7787 - 9.872 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000114888 ENSMUSP00000110538 TRANSLATION protein_coding - CCDS50044.1 1 96.0 0.0 0.75 19.8 30.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000046711 Hmga1 ENSMUST00000232552 ENSMUSP00000156044 TRANSLATION protein_coding - CCDS50044.1 - 96.0 0.0 0.75 19.8 30.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000046711 Hmga1 ENSMUST00000232265 ENSMUSP00000156173 TRANSLATION protein_coding - CCDS28564.1 - 107.0 0.0 0.75 9.8 30.5 0.0 -4,-5 0.7787 - 9.872 MINOR ENSMUSG00000046711 Hmga1 ENSMUST00000117254 ENSMUSP00000113011 TRANSLATION protein_coding - - 2 95.0 0.0 0.75 19.8 30.5 0.0 -4,-5 0.8341 1 12.0 ALTERNATIVE:1 ENSMUSG00000062165 Vmn1r232 ENSMUST00000237560 ENSMUSP00000157872 TRANSLATION protein_coding - CCDS28431.1 - 351.0 0.0 0.0 0.0 103.0 7.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062165 Vmn1r232 ENSMUST00000077001 ENSMUSP00000076261 TRANSLATION protein_coding - CCDS28431.1 - 351.0 0.0 0.0 0.0 103.0 7.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000062165 Vmn1r232 ENSMUST00000237554 ENSMUSP00000157752 TRANSLATION protein_coding - CCDS28431.1 - 351.0 0.0 0.0 0.0 103.0 7.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000024181 Mrpl28 ENSMUST00000025014 ENSMUSP00000025014 TRANSLATION protein_coding - CCDS37509.1 1 257.0 0.0 5.49 12.8 0.0 0.0 -4,0 1.0 8 9.0 PRINCIPAL:3 ENSMUSG00000024181 Mrpl28 ENSMUST00000127647 ENSMUSP00000115369 TRANSLATION protein_coding - - 3 198.0 0.0 3.316 0.0 0.0 0.0 -4,0 0.0109 5 1.65 MINOR ENSMUSG00000024181 Mrpl28 ENSMUST00000237950 ENSMUSP00000158366 TRANSLATION nonsense_mediated_decay - - - 177.0 0.0 2.0 0.0 0.0 0.0 -4,0 0.008 3 -2.0 MINOR ENSMUSG00000024181 Mrpl28 ENSMUST00000123132 - NO_TRANSLATION retained_intron ENSMUSG00000024181 Mrpl28 ENSMUST00000236040 - NO_TRANSLATION retained_intron ENSMUSG00000024181 Mrpl28 ENSMUST00000236166 ENSMUSP00000158545 TRANSLATION protein_coding - - - 250.0 0.0 5.16 12.8 0.0 0.0 -4,0 0.7893 7 8.34 ALTERNATIVE:1 ENSMUSG00000023943 Sult1c1 ENSMUST00000024738 ENSMUSP00000024738 TRANSLATION protein_coding - CCDS28884.1 1 304.0 19.0 7.0 18.6 304.0 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000067424 Zfp563 ENSMUST00000153072 ENSMUSP00000119142 TRANSLATION protein_coding start/stop - 2 138.0 0.0 1.45 0.0 77.9 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000067424 Zfp563 ENSMUST00000140829 ENSMUSP00000121678 TRANSLATION protein_coding stop - 2 208.0 9.0 2.59 0.0 102.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000067424 Zfp563 ENSMUST00000131722 ENSMUSP00000118809 TRANSLATION protein_coding - CCDS50063.1 2 448.0 43.0 3.55 0.4 269.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000001870 Ltbp1 ENSMUST00000234008 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001870 Ltbp1 ENSMUST00000234490 ENSMUSP00000157016 TRANSLATION protein_coding - - - 1713.0 105.0 14.488 1.1 654.4 0.0 4,-2 0.3768 19 14.033 MINOR ENSMUSG00000001870 Ltbp1 ENSMUST00000127458 - NO_TRANSLATION retained_intron ENSMUSG00000001870 Ltbp1 ENSMUST00000001927 ENSMUSP00000001927 TRANSLATION protein_coding - CCDS28973.1 5 1712.0 105.0 14.488 1.4 654.4 0.0 4,-2 0.507 20 14.129 MINOR ENSMUSG00000001870 Ltbp1 ENSMUST00000112516 ENSMUSP00000108135 TRANSLATION protein_coding - CCDS37694.1 5 1394.0 105.0 14.488 5.6 654.4 0.0 1,-3 0.8299 17 15.485 PRINCIPAL:3 ENSMUSG00000001870 Ltbp1 ENSMUST00000135750 - NO_TRANSLATION retained_intron ENSMUSG00000001870 Ltbp1 ENSMUST00000135447 ENSMUSP00000116890 TRANSLATION protein_coding stop - 1 980.0 78.0 10.94 0.0 441.3 0.0 1,-3 0.0095 14 -2.0 MINOR ENSMUSG00000001870 Ltbp1 ENSMUST00000234327 ENSMUSP00000157367 TRANSLATION protein_coding start/stop - - 82.0 15.0 1.6 0.0 65.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001870 Ltbp1 ENSMUST00000146839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001870 Ltbp1 ENSMUST00000112514 ENSMUSP00000108133 TRANSLATION protein_coding - CCDS84336.1 5 1341.0 105.0 14.088 10.3 640.1 0.0 1,-3 1.0 15 15.802 ALTERNATIVE:1 ENSMUSG00000024070 Prkd3 ENSMUST00000146917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024070 Prkd3 ENSMUST00000124229 - NO_TRANSLATION retained_intron ENSMUSG00000024070 Prkd3 ENSMUST00000118768 ENSMUSP00000113232 TRANSLATION protein_coding - CCDS50184.1 1 795.0 33.0 11.025 0.0 380.3 0.0 -4,-5 0.1202 4 13.898 MINOR ENSMUSG00000024070 Prkd3 ENSMUST00000003191 ENSMUSP00000003191 TRANSLATION protein_coding - CCDS37699.1 1 889.0 33.0 11.075 17.8 380.1 0.0 -4,-2 0.9922 7 18.0 ALTERNATIVE:1 ENSMUSG00000024070 Prkd3 ENSMUST00000118991 ENSMUSP00000112775 TRANSLATION protein_coding - - 2 297.0 16.0 3.575 0.0 107.2 0.0 -4,-5 0.0 - 1.5 MINOR ENSMUSG00000024070 Prkd3 ENSMUST00000119284 ENSMUSP00000113395 TRANSLATION protein_coding - CCDS50185.1 1 890.0 33.0 11.025 17.8 380.1 0.0 -4,-2 1.0 7 17.898 PRINCIPAL:4 ENSMUSG00000024070 Prkd3 ENSMUST00000130070 - NO_TRANSLATION retained_intron ENSMUSG00000024070 Prkd3 ENSMUST00000168887 ENSMUSP00000132004 TRANSLATION protein_coding - CCDS37699.1 5 889.0 33.0 11.075 17.8 380.1 0.0 -4,-2 0.9922 7 18.0 ALTERNATIVE:1 ENSMUSG00000073422 Hsd17b8 ENSMUST00000045467 ENSMUSP00000038069 TRANSLATION protein_coding - CCDS50071.1 1 259.0 29.0 6.1 22.2 172.1 0.0 -2,2 1.0 10 21.934 PRINCIPAL:1 ENSMUSG00000073422 Hsd17b8 ENSMUST00000235579 - NO_TRANSLATION retained_intron ENSMUSG00000073422 Hsd17b8 ENSMUST00000173894 - NO_TRANSLATION retained_intron ENSMUSG00000073422 Hsd17b8 ENSMUST00000237759 ENSMUSP00000157769 TRANSLATION protein_coding - - - 274.0 29.0 6.133 0.1 172.1 0.0 -2,2 0.1135 10 18.0 MINOR ENSMUSG00000073422 Hsd17b8 ENSMUST00000173616 - NO_TRANSLATION retained_intron ENSMUSG00000073422 Hsd17b8 ENSMUST00000173425 - NO_TRANSLATION retained_intron ENSMUSG00000073422 Hsd17b8 ENSMUST00000170644 - NO_TRANSLATION retained_intron ENSMUSG00000073422 Hsd17b8 ENSMUST00000174029 - NO_TRANSLATION retained_intron ENSMUSG00000073422 Hsd17b8 ENSMUST00000236627 ENSMUSP00000158064 TRANSLATION protein_coding - - - 147.0 15.0 4.25 0.0 112.8 0.0 -4,-6 0.0 5 4.674 MINOR ENSMUSG00000073422 Hsd17b8 ENSMUST00000236164 - NO_TRANSLATION retained_intron ENSMUSG00000073422 Hsd17b8 ENSMUST00000174399 ENSMUSP00000157935 TRANSLATION protein_coding stop - 5 138.0 15.0 4.25 0.0 112.8 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000073422 Hsd17b8 ENSMUST00000114303 ENSMUSP00000133546 TRANSLATION protein_coding stop - 5 234.0 29.0 5.515 0.0 162.9 0.0 -2,2 0.0056 9 -2.0 MINOR ENSMUSG00000037089 Slc35b2 ENSMUST00000225226 - NO_TRANSLATION retained_intron ENSMUSG00000037089 Slc35b2 ENSMUST00000223987 ENSMUSP00000153631 TRANSLATION protein_coding - CCDS37630.1 - 382.0 0.0 0.2 6.0 256.7 7.0 -4,-7 0.6837 5 13.46 MINOR ENSMUSG00000037089 Slc35b2 ENSMUST00000224559 - NO_TRANSLATION retained_intron ENSMUSG00000037089 Slc35b2 ENSMUST00000233139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037089 Slc35b2 ENSMUST00000224905 ENSMUSP00000153367 TRANSLATION protein_coding - - - 431.0 0.0 0.2 14.7 256.7 9.0 2,-3 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000037089 Slc35b2 ENSMUST00000041353 ENSMUSP00000037834 TRANSLATION protein_coding - CCDS37630.1 1 382.0 0.0 0.2 6.0 256.7 7.0 -4,-7 0.6837 5 13.46 MINOR ENSMUSG00000037089 Slc35b2 ENSMUST00000226086 ENSMUSP00000153497 TRANSLATION protein_coding - - - 124.0 0.0 0.0 0.0 0.0 2.0 2,-3 0.0064 3 0.0 MINOR ENSMUSG00000037089 Slc35b2 ENSMUST00000224341 ENSMUSP00000153676 TRANSLATION protein_coding start - - 69.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000095858 Or12d14-ps1 ENSMUST00000178766 ENSMUSP00000154728 TRANSLATION protein_coding - - 5 319.0 0.0 1.0 0.0 177.2 6.0 -4,-6 0.2704 - 8.0 ALTERNATIVE:2 ENSMUSG00000095858 Or12d14-ps1 ENSMUST00000215398 ENSMUSP00000154761 TRANSLATION protein_coding - - 5 322.0 0.0 1.0 0.0 177.2 6.0 -4,-7 0.8184 - 8.0 PRINCIPAL:2 ENSMUSG00000095858 Or12d14-ps1 ENSMUST00000216996 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095540 Esp4 ENSMUST00000178498 ENSMUSP00000136092 TRANSLATION protein_coding - CCDS57093.1 1 117.0 0.0 0.4 0.0 125.5 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000034039 Prss29 ENSMUST00000234609 ENSMUSP00000156980 TRANSLATION protein_coding - - - 278.0 3.0 4.12375 0.8 221.7 0.0 3,-2 0.4349 - 11.0 ALTERNATIVE:2 ENSMUSG00000034039 Prss29 ENSMUST00000024993 ENSMUSP00000024993 TRANSLATION protein_coding - CCDS28516.1 1 279.0 3.0 4.12375 0.8 221.2 0.0 3,-2 1.0 - 11.0 PRINCIPAL:2 ENSMUSG00000057246 Tsbp1 ENSMUST00000135217 ENSMUSP00000119513 TRANSLATION protein_coding stop - 3 67.0 0.0 0.948 0.0 0.0 3.0 -1,-5 0.1741 - -2.0 MINOR ENSMUSG00000057246 Tsbp1 ENSMUST00000149121 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057246 Tsbp1 ENSMUST00000223957 ENSMUSP00000153432 TRANSLATION protein_coding start/stop - - 144.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0382 1 -2.0 MINOR ENSMUSG00000057246 Tsbp1 ENSMUST00000078615 ENSMUSP00000077685 TRANSLATION protein_coding - CCDS37586.1 1 393.0 0.0 0.948 0.0 0.0 1.0 -1,-5 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000057246 Tsbp1 ENSMUST00000114175 ENSMUSP00000109812 TRANSLATION protein_coding - CCDS50076.1 1 286.0 0.0 0.948 0.0 0.0 1.0 -1,-5 0.4121 1 6.0 ALTERNATIVE:2 ENSMUSG00000057246 Tsbp1 ENSMUST00000139063 ENSMUSP00000121839 TRANSLATION protein_coding stop - 5 149.0 0.0 0.948 0.0 0.0 3.0 -1,-5 0.1725 - -2.0 MINOR ENSMUSG00000057246 Tsbp1 ENSMUST00000235202 - NO_TRANSLATION retained_intron ENSMUSG00000057246 Tsbp1 ENSMUST00000142208 - NO_TRANSLATION retained_intron ENSMUSG00000057246 Tsbp1 ENSMUST00000142317 ENSMUSP00000117413 TRANSLATION protein_coding stop - 5 117.0 0.0 0.948 0.0 0.0 3.0 -1,-5 0.1721 - -2.0 MINOR ENSMUSG00000057246 Tsbp1 ENSMUST00000097348 ENSMUSP00000094961 TRANSLATION protein_coding start - 5 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0168 1 -2.0 MINOR ENSMUSG00000057246 Tsbp1 ENSMUST00000223765 ENSMUSP00000153186 TRANSLATION protein_coding start/stop - - 246.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0552 1 -2.0 MINOR ENSMUSG00000057246 Tsbp1 ENSMUST00000131998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057246 Tsbp1 ENSMUST00000236732 ENSMUSP00000158397 TRANSLATION nonsense_mediated_decay start - - 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0168 1 -2.0 MINOR ENSMUSG00000073408 Mucl3 ENSMUST00000095467 ENSMUSP00000093120 TRANSLATION protein_coding - CCDS28701.1 1 500.0 0.0 0.4 0.0 0.0 0.0 0,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000024095 Hnrnpll ENSMUST00000183516 - NO_TRANSLATION retained_intron ENSMUSG00000024095 Hnrnpll ENSMUST00000184297 ENSMUSP00000139075 TRANSLATION nonsense_mediated_decay - - 5 331.0 0.0 4.5 0.0 53.4 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000024095 Hnrnpll ENSMUST00000184578 - NO_TRANSLATION retained_intron ENSMUSG00000024095 Hnrnpll ENSMUST00000184726 - NO_TRANSLATION retained_intron ENSMUSG00000024095 Hnrnpll ENSMUST00000184889 - NO_TRANSLATION retained_intron ENSMUSG00000024095 Hnrnpll ENSMUST00000184635 ENSMUSP00000139372 TRANSLATION protein_coding - CCDS70845.1 1 591.0 0.0 8.975 0.0 236.9 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000024301 Kifc5b ENSMUST00000078961 ENSMUSP00000077984 TRANSLATION protein_coding - CCDS37517.1 5 672.0 11.0 2.72 0.3 314.2 0.0 -4,-6 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000024301 Kifc5b ENSMUST00000235998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024301 Kifc5b ENSMUST00000235206 - NO_TRANSLATION retained_intron ENSMUSG00000024301 Kifc5b ENSMUST00000236476 - NO_TRANSLATION retained_intron ENSMUSG00000023914 Mep1a ENSMUST00000024707 ENSMUSP00000024707 TRANSLATION protein_coding - CCDS37623.1 1 760.0 8.0 6.55 0.0 388.6 1.0 1,-3 0.4749 19 18.0 MINOR ENSMUSG00000023914 Mep1a ENSMUST00000130964 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023914 Mep1a ENSMUST00000152155 - NO_TRANSLATION retained_intron ENSMUSG00000023914 Mep1a ENSMUST00000117137 ENSMUSP00000113838 TRANSLATION protein_coding - - 1 747.0 8.0 6.55 6.7 388.6 1.0 1,-3 1.0 19 20.0 PRINCIPAL:1 ENSMUSG00000067288 Rps28 ENSMUST00000234017 - NO_TRANSLATION retained_intron ENSMUSG00000067288 Rps28 ENSMUST00000174788 - NO_TRANSLATION retained_intron ENSMUSG00000067288 Rps28 ENSMUST00000166693 ENSMUSP00000133642 TRANSLATION protein_coding - CCDS37571.1 5 69.0 0.0 2.0 34.9 120.2 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000067288 Rps28 ENSMUST00000173480 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067288 Rps28 ENSMUST00000087342 ENSMUSP00000110013 TRANSLATION protein_coding - CCDS37571.1 1 69.0 0.0 2.0 34.9 120.2 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000067288 Rps28 ENSMUST00000173844 ENSMUSP00000133357 TRANSLATION protein_coding - CCDS37571.1 1 69.0 0.0 2.0 34.9 120.2 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000067288 Rps28 ENSMUST00000173879 ENSMUSP00000134240 TRANSLATION protein_coding start - 2 56.0 0.0 1.5 0.0 110.6 0.0 -4,-2 0.0494 3 -2.0 MINOR ENSMUSG00000067288 Rps28 ENSMUST00000173019 ENSMUSP00000134615 TRANSLATION protein_coding - CCDS37571.1 3 69.0 0.0 2.0 34.9 120.2 0.0 -4,-2 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000059791 Nrm ENSMUST00000174873 ENSMUSP00000133355 TRANSLATION protein_coding stop - 3 95.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0961 - -2.0 MINOR ENSMUSG00000059791 Nrm ENSMUST00000074259 ENSMUSP00000073873 TRANSLATION protein_coding - CCDS28708.1 1 262.0 0.0 2.048 0.8 0.0 4.0 1,-3 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000059791 Nrm ENSMUST00000172931 ENSMUSP00000134569 TRANSLATION protein_coding start/stop - 3 101.0 0.0 0.798 0.0 0.0 2.0 -4,-7 0.0291 1 -2.0 MINOR ENSMUSG00000095093 Vmn2r111 ENSMUST00000234296 ENSMUSP00000157212 TRANSLATION protein_coding - - - 561.0 0.0 1.42 0.0 111.4 0.0 4,-1 0.0006 - 1.8 MINOR ENSMUSG00000095093 Vmn2r111 ENSMUST00000234223 ENSMUSP00000157355 TRANSLATION protein_coding - - - 547.0 0.0 1.42 0.0 111.4 0.0 4,-1 0.0006 - 1.8 MINOR ENSMUSG00000095093 Vmn2r111 ENSMUST00000092491 ENSMUSP00000090148 TRANSLATION protein_coding - CCDS50002.1 1 857.0 4.0 3.52 0.1 372.6 8.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095093 Vmn2r111 ENSMUST00000234027 ENSMUSP00000157310 TRANSLATION protein_coding - - - 817.0 4.0 3.02 0.0 363.4 8.0 4,-1 0.0665 - 14.446 MINOR ENSMUSG00000095093 Vmn2r111 ENSMUST00000234301 - NO_TRANSLATION retained_intron ENSMUSG00000053390 Zfp952 ENSMUST00000141815 ENSMUSP00000157376 TRANSLATION protein_coding - - 1 179.0 0.0 2.016 0.0 77.2 0.0 -4,-5 0.0 - 2.532 MINOR ENSMUSG00000053390 Zfp952 ENSMUST00000129057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053390 Zfp952 ENSMUST00000087666 ENSMUSP00000084949 TRANSLATION protein_coding - CCDS37559.1 1 504.0 36.0 3.75 0.1 236.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000053390 Zfp952 ENSMUST00000157017 ENSMUSP00000123066 TRANSLATION protein_coding stop - 3 141.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043592 Unc5cl ENSMUST00000162132 ENSMUSP00000124197 TRANSLATION protein_coding start - 5 110.0 2.0 0.575 0.0 0.0 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000043592 Unc5cl ENSMUST00000162467 ENSMUSP00000125598 TRANSLATION nonsense_mediated_decay start - 5 73.0 1.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043592 Unc5cl ENSMUST00000161587 ENSMUSP00000124990 TRANSLATION nonsense_mediated_decay start - 1 76.0 2.0 0.698 0.0 0.0 0.0 -4,-7 0.0315 1 -2.0 MINOR ENSMUSG00000043592 Unc5cl ENSMUST00000161418 ENSMUSP00000125243 TRANSLATION nonsense_mediated_decay start - 5 79.0 2.0 0.5 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000043592 Unc5cl ENSMUST00000162313 ENSMUSP00000125101 TRANSLATION nonsense_mediated_decay - - 2 67.0 2.0 0.5 0.0 0.0 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000043592 Unc5cl ENSMUST00000074574 ENSMUSP00000074159 TRANSLATION protein_coding - CCDS28870.1 1 518.0 2.0 0.62245 8.7 178.6 0.0 -3,-4 1.0 4 16.352 PRINCIPAL:1 ENSMUSG00000033972 Zfp944 ENSMUST00000115535 ENSMUSP00000111197 TRANSLATION protein_coding - CCDS50000.1 5 492.0 44.0 1.2 0.0 270.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000073434 Wdr90 ENSMUST00000176923 ENSMUSP00000135420 TRANSLATION protein_coding - - 5 1874.0 0.0 13.51 0.1 178.2 0.0 -4,-7 1.0 10 8.0 PRINCIPAL:2 ENSMUSG00000073434 Wdr90 ENSMUST00000176170 - NO_TRANSLATION retained_intron ENSMUSG00000073434 Wdr90 ENSMUST00000177031 - NO_TRANSLATION retained_intron ENSMUSG00000073434 Wdr90 ENSMUST00000176678 ENSMUSP00000135506 TRANSLATION protein_coding start/stop - 3 181.0 0.0 1.578 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000073434 Wdr90 ENSMUST00000176983 - NO_TRANSLATION retained_intron ENSMUSG00000073434 Wdr90 ENSMUST00000177170 - NO_TRANSLATION retained_intron ENSMUSG00000073434 Wdr90 ENSMUST00000177017 - NO_TRANSLATION retained_intron ENSMUSG00000073434 Wdr90 ENSMUST00000177340 - NO_TRANSLATION retained_intron ENSMUSG00000073434 Wdr90 ENSMUST00000176963 - NO_TRANSLATION retained_intron ENSMUSG00000073434 Wdr90 ENSMUST00000079461 ENSMUSP00000078426 TRANSLATION protein_coding - CCDS50037.1 5 1892.0 0.0 13.51 0.0 177.1 0.0 -4,-7 0.6997 10 8.0 ALTERNATIVE:2 ENSMUSG00000073434 Wdr90 ENSMUST00000176575 - NO_TRANSLATION retained_intron ENSMUSG00000073434 Wdr90 ENSMUST00000235437 ENSMUSP00000158528 TRANSLATION protein_coding start - - 314.0 0.0 2.648 0.0 13.7 0.0 -2,-3 0.0014 1 -2.0 MINOR ENSMUSG00000109212 Or14j5 ENSMUST00000174139 ENSMUSP00000134080 TRANSLATION protein_coding - CCDS28768.1 - 319.0 0.0 1.0 1.4 153.1 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000109212 Or14j5 ENSMUST00000213844 ENSMUSP00000149896 TRANSLATION protein_coding - CCDS28768.1 5 319.0 0.0 1.0 1.4 153.1 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000109212 Or14j5 ENSMUST00000217487 ENSMUSP00000151205 TRANSLATION protein_coding - CCDS28768.1 5 319.0 0.0 1.0 1.4 153.1 6.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000034482 Ly6g5c ENSMUST00000037849 ENSMUSP00000039151 TRANSLATION protein_coding - CCDS28682.1 1 149.0 0.0 2.0 1.2 0.0 0.0 0,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000047428 Dlk2 ENSMUST00000170271 ENSMUSP00000132349 TRANSLATION protein_coding - - 5 152.0 0.0 2.6 0.0 0.0 0.0 3,-1 0.0017 - 3.9 MINOR ENSMUSG00000047428 Dlk2 ENSMUST00000166280 ENSMUSP00000126993 TRANSLATION protein_coding - CCDS37634.2 1 382.0 18.0 3.65 9.9 105.9 1.0 3,-1 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000047428 Dlk2 ENSMUST00000166617 ENSMUSP00000128897 TRANSLATION protein_coding - CCDS37634.2 1 382.0 18.0 3.65 9.9 105.9 1.0 3,-1 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000047428 Dlk2 ENSMUST00000188223 ENSMUSP00000141164 TRANSLATION protein_coding stop - 3 108.0 0.0 1.25 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000047428 Dlk2 ENSMUST00000061722 ENSMUSP00000058470 TRANSLATION protein_coding - - 5 425.0 18.0 3.65 0.0 105.9 1.0 -4,0 0.068 1 18.0 MINOR ENSMUSG00000045378 Pxt1 ENSMUST00000232977 ENSMUSP00000156741 TRANSLATION protein_coding - - - 82.0 0.0 1.5 0.0 103.6 0.0 -4,-6 0.7989 - 8.0 PRINCIPAL:2 ENSMUSG00000045378 Pxt1 ENSMUST00000233413 ENSMUSP00000156410 TRANSLATION protein_coding - - - 18.0 0.0 0.5 0.0 35.8 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000045378 Pxt1 ENSMUST00000051526 ENSMUSP00000053366 TRANSLATION protein_coding - CCDS37534.1 1 51.0 0.0 1.5 0.0 103.6 0.0 -4,-6 0.3584 - 8.0 ALTERNATIVE:2 ENSMUSG00000003665 Has1 ENSMUST00000003762 ENSMUSP00000003762 TRANSLATION protein_coding - CCDS37459.1 1 583.0 13.0 3.2 7.1 38.4 0.0 -2,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000003665 Has1 ENSMUST00000232410 - NO_TRANSLATION retained_intron ENSMUSG00000079722 Ttll2 ENSMUST00000115747 ENSMUSP00000111413 TRANSLATION protein_coding - CCDS49941.1 1 540.0 21.0 0.32 0.1 269.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000047407 Tgif1 ENSMUST00000166395 ENSMUSP00000130930 TRANSLATION protein_coding - CCDS50175.1 1 305.0 0.0 1.962 0.0 63.6 0.0 -4,-2 0.201 2 12.0 MINOR ENSMUSG00000047407 Tgif1 ENSMUST00000132825 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047407 Tgif1 ENSMUST00000118283 ENSMUSP00000113192 TRANSLATION protein_coding - CCDS50174.1 1 252.0 0.0 1.962 11.0 63.6 0.0 -4,-2 0.8258 2 13.896 MINOR ENSMUSG00000047407 Tgif1 ENSMUST00000172229 ENSMUSP00000127139 TRANSLATION protein_coding - CCDS50174.1 3 252.0 0.0 1.962 11.0 63.6 0.0 -4,-2 0.8258 2 13.896 MINOR ENSMUSG00000047407 Tgif1 ENSMUST00000125329 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047407 Tgif1 ENSMUST00000135007 ENSMUSP00000124168 TRANSLATION protein_coding stop - 2 158.0 0.0 1.962 0.0 63.6 0.0 -4,-2 0.0298 1 -2.0 MINOR ENSMUSG00000047407 Tgif1 ENSMUST00000156484 ENSMUSP00000124970 TRANSLATION protein_coding start - 2 57.0 0.0 1.0 0.0 33.4 0.0 -4,-2 0.0004 - -2.0 MINOR ENSMUSG00000047407 Tgif1 ENSMUST00000186358 ENSMUSP00000139438 TRANSLATION protein_coding - - 3 84.0 0.0 1.132 0.0 33.4 0.0 -4,-5 0.0004 - 6.612 MINOR ENSMUSG00000047407 Tgif1 ENSMUST00000134654 ENSMUSP00000125247 TRANSLATION protein_coding stop - 3 58.0 0.0 1.132 0.0 30.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000047407 Tgif1 ENSMUST00000127719 ENSMUSP00000115375 TRANSLATION protein_coding stop - 3 242.0 0.0 1.962 0.0 63.6 0.0 -4,-2 0.0323 1 -2.0 MINOR ENSMUSG00000047407 Tgif1 ENSMUST00000190687 - NO_TRANSLATION retained_intron ENSMUSG00000047407 Tgif1 ENSMUST00000059775 ENSMUSP00000060512 TRANSLATION protein_coding - CCDS37683.1 1 272.0 0.0 1.962 22.1 63.6 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000015597 Zfp318 ENSMUST00000138127 ENSMUSP00000116544 TRANSLATION protein_coding - CCDS28826.2 5 1154.0 4.0 0.0 0.1 0.0 0.0 -4,-2 0.9778 10 4.0 PRINCIPAL:2 ENSMUSG00000015597 Zfp318 ENSMUST00000152472 ENSMUSP00000116132 TRANSLATION nonsense_mediated_decay start - 5 54.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0291 - -2.0 MINOR ENSMUSG00000015597 Zfp318 ENSMUST00000113481 ENSMUSP00000109109 TRANSLATION protein_coding - CCDS28827.2 5 2237.0 3.0 0.0 0.0 0.0 0.0 -4,-2 0.487 27 3.0 ALTERNATIVE:2 ENSMUSG00000015597 Zfp318 ENSMUST00000136017 - NO_TRANSLATION retained_intron ENSMUSG00000015597 Zfp318 ENSMUST00000123733 - NO_TRANSLATION retained_intron ENSMUSG00000056692 Ilrun ENSMUST00000114863 ENSMUSP00000110513 TRANSLATION protein_coding - CCDS28569.1 1 291.0 0.0 2.5 17.2 155.8 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000056692 Ilrun ENSMUST00000233035 - NO_TRANSLATION retained_intron ENSMUSG00000056692 Ilrun ENSMUST00000075076 ENSMUSP00000074585 TRANSLATION protein_coding - - 1 295.0 0.0 2.5 0.3 155.8 0.0 -4,-5 0.1957 5 12.0 MINOR ENSMUSG00000056692 Ilrun ENSMUST00000114859 ENSMUSP00000110509 TRANSLATION protein_coding - CCDS37523.1 1 216.0 0.0 2.5 6.0 155.8 0.0 -4,-5 0.4297 4 13.236 MINOR ENSMUSG00000056692 Ilrun ENSMUST00000233508 ENSMUSP00000156684 TRANSLATION protein_coding - - - 238.0 0.0 2.033 0.0 141.1 0.0 -4,-5 0.0007 3 9.996 MINOR ENSMUSG00000056692 Ilrun ENSMUST00000233131 ENSMUSP00000156539 TRANSLATION protein_coding - - - 225.0 0.0 1.7 6.4 70.3 0.0 -4,-5 0.0985 4 6.282 MINOR ENSMUSG00000056692 Ilrun ENSMUST00000233533 ENSMUSP00000156628 TRANSLATION protein_coding - - - 223.0 0.0 2.5 0.0 155.8 0.0 -4,-5 0.0125 3 12.0 MINOR ENSMUSG00000024207 Acsbg2 ENSMUST00000043062 ENSMUSP00000042352 TRANSLATION protein_coding - CCDS28916.1 1 667.0 24.0 4.695 0.8 303.6 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000058124 H2-M10.3 ENSMUST00000073546 ENSMUSP00000073236 TRANSLATION protein_coding - CCDS28722.1 1 330.0 0.0 4.0 0.0 226.1 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000041538 H2-Ob ENSMUST00000167280 ENSMUSP00000129657 TRANSLATION protein_coding - - 1 245.0 0.0 3.0 1.2 172.0 1.0 1,-3 0.0495 4 9.212 MINOR ENSMUSG00000041538 H2-Ob ENSMUST00000173764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041538 H2-Ob ENSMUST00000236838 ENSMUSP00000158326 TRANSLATION protein_coding - - - 303.0 0.0 3.75 0.0 195.7 1.0 1,-3 0.1089 4 12.0 MINOR ENSMUSG00000041538 H2-Ob ENSMUST00000173681 - NO_TRANSLATION retained_intron ENSMUSG00000041538 H2-Ob ENSMUST00000237064 - NO_TRANSLATION retained_intron ENSMUSG00000041538 H2-Ob ENSMUST00000172952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041538 H2-Ob ENSMUST00000095342 ENSMUSP00000092985 TRANSLATION protein_coding - CCDS37582.1 1 271.0 0.0 3.75 4.0 195.7 1.0 1,-3 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000023927 Satb1 ENSMUST00000129205 ENSMUSP00000123409 TRANSLATION protein_coding stop - 3 154.0 0.0 1.75 0.0 98.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000023927 Satb1 ENSMUST00000133574 ENSMUSP00000120536 TRANSLATION protein_coding - CCDS28876.1 1 764.0 0.0 8.25 11.2 455.7 0.0 -4,-5 1.0 10 11.0 PRINCIPAL:4 ENSMUSG00000023927 Satb1 ENSMUST00000148559 ENSMUSP00000121224 TRANSLATION protein_coding stop - 3 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023927 Satb1 ENSMUST00000146414 - NO_TRANSLATION retained_intron ENSMUSG00000023927 Satb1 ENSMUST00000140979 ENSMUSP00000118839 TRANSLATION protein_coding - - 5 795.0 0.0 8.25 11.0 455.7 0.0 -4,-5 0.763 10 10.94 ALTERNATIVE:1 ENSMUSG00000023927 Satb1 ENSMUST00000156051 - NO_TRANSLATION retained_intron ENSMUSG00000023927 Satb1 ENSMUST00000137697 - NO_TRANSLATION retained_intron ENSMUSG00000023927 Satb1 ENSMUST00000144331 ENSMUSP00000116006 TRANSLATION protein_coding - CCDS28876.1 1 764.0 0.0 8.25 11.2 455.7 0.0 -4,-5 1.0 10 11.0 PRINCIPAL:4 ENSMUSG00000023927 Satb1 ENSMUST00000140727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023927 Satb1 ENSMUST00000169480 ENSMUSP00000128841 TRANSLATION protein_coding - CCDS28876.1 5 764.0 0.0 8.25 11.2 455.7 0.0 -4,-5 1.0 10 11.0 PRINCIPAL:4 ENSMUSG00000023927 Satb1 ENSMUST00000152830 ENSMUSP00000119842 TRANSLATION protein_coding - CCDS28876.1 2 764.0 0.0 8.25 11.2 455.7 0.0 -4,-5 1.0 10 11.0 PRINCIPAL:4 ENSMUSG00000023927 Satb1 ENSMUST00000129667 ENSMUSP00000116020 TRANSLATION protein_coding - CCDS28876.1 5 764.0 0.0 8.25 11.2 455.7 0.0 -4,-5 1.0 10 11.0 PRINCIPAL:4 ENSMUSG00000023927 Satb1 ENSMUST00000124222 ENSMUSP00000116639 TRANSLATION protein_coding stop - 5 74.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000023927 Satb1 ENSMUST00000176669 ENSMUSP00000134957 TRANSLATION protein_coding - CCDS28876.1 1 764.0 0.0 8.25 11.2 455.7 0.0 -4,-5 1.0 10 11.0 PRINCIPAL:4 ENSMUSG00000024163 Mapk8ip3 ENSMUST00000146706 ENSMUSP00000118422 TRANSLATION protein_coding stop - 5 235.0 0.0 1.1 0.0 52.8 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000024163 Mapk8ip3 ENSMUST00000121787 ENSMUSP00000113753 TRANSLATION protein_coding - CCDS50027.1 1 1300.0 0.0 2.855 7.6 290.9 0.0 -4,-5 0.8862 24 10.274 ALTERNATIVE:1 ENSMUSG00000024163 Mapk8ip3 ENSMUST00000148360 - NO_TRANSLATION retained_intron ENSMUSG00000024163 Mapk8ip3 ENSMUST00000156663 - NO_TRANSLATION retained_intron ENSMUSG00000024163 Mapk8ip3 ENSMUST00000146923 ENSMUSP00000114802 TRANSLATION nonsense_mediated_decay - CCDS37498.1 2 1337.0 0.0 2.921 8.6 292.2 0.0 -4,-5 0.9945 26 -2.0 MINOR ENSMUSG00000024163 Mapk8ip3 ENSMUST00000147109 - NO_TRANSLATION retained_intron ENSMUSG00000024163 Mapk8ip3 ENSMUST00000126280 - NO_TRANSLATION retained_intron ENSMUSG00000024163 Mapk8ip3 ENSMUST00000145357 - NO_TRANSLATION retained_intron ENSMUSG00000024163 Mapk8ip3 ENSMUST00000132258 - NO_TRANSLATION retained_intron ENSMUSG00000024163 Mapk8ip3 ENSMUST00000121723 ENSMUSP00000113698 TRANSLATION protein_coding - CCDS50028.1 1 1306.0 0.0 2.855 7.6 292.2 0.0 -4,-5 0.8947 25 10.274 ALTERNATIVE:1 ENSMUSG00000024163 Mapk8ip3 ENSMUST00000144336 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024163 Mapk8ip3 ENSMUST00000152486 - NO_TRANSLATION retained_intron ENSMUSG00000024163 Mapk8ip3 ENSMUST00000125648 - NO_TRANSLATION retained_intron ENSMUSG00000024163 Mapk8ip3 ENSMUST00000120035 ENSMUSP00000114084 TRANSLATION protein_coding - CCDS50024.1 1 1336.0 0.0 3.021 8.6 292.2 0.0 -4,-5 1.0 26 11.0 PRINCIPAL:4 ENSMUSG00000024163 Mapk8ip3 ENSMUST00000119115 ENSMUSP00000112955 TRANSLATION protein_coding - CCDS50026.1 1 1305.0 0.0 2.955 7.6 292.2 0.0 -4,-5 0.9073 25 10.472 ALTERNATIVE:1 ENSMUSG00000024163 Mapk8ip3 ENSMUST00000133198 - NO_TRANSLATION retained_intron ENSMUSG00000024163 Mapk8ip3 ENSMUST00000088345 ENSMUSP00000085683 TRANSLATION protein_coding - CCDS37498.1 1 1337.0 0.0 2.921 8.6 292.2 0.0 -4,-5 0.9945 26 10.802 ALTERNATIVE:1 ENSMUSG00000024163 Mapk8ip3 ENSMUST00000115228 ENSMUSP00000110883 TRANSLATION protein_coding - CCDS50025.1 1 1322.0 0.0 2.921 8.6 290.9 0.0 -4,-5 0.9588 25 10.802 ALTERNATIVE:1 ENSMUSG00000024163 Mapk8ip3 ENSMUST00000117509 ENSMUSP00000112712 TRANSLATION protein_coding - CCDS50029.1 1 1314.0 0.0 2.855 7.6 292.2 0.0 -4,-5 0.8936 25 10.274 ALTERNATIVE:1 ENSMUSG00000034382 AI661453 ENSMUST00000037701 ENSMUSP00000045345 TRANSLATION protein_coding - - 1 193.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.5896 4 0.0 ALTERNATIVE:2 ENSMUSG00000034382 AI661453 ENSMUST00000150819 ENSMUSP00000120133 TRANSLATION protein_coding - CCDS50131.1 5 1206.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.5187 27 0.0 PRINCIPAL:3 ENSMUSG00000001229 Dpp9 ENSMUST00000223616 - NO_TRANSLATION retained_intron ENSMUSG00000001229 Dpp9 ENSMUST00000233586 - NO_TRANSLATION retained_intron ENSMUSG00000001229 Dpp9 ENSMUST00000038794 ENSMUSP00000046604 TRANSLATION protein_coding - CCDS37663.1 1 862.0 5.0 18.5 1.1 543.7 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000091601 Or2h1b ENSMUST00000171679 ENSMUSP00000125907 TRANSLATION protein_coding - CCDS28736.1 - 312.0 0.0 2.5 7.9 168.7 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000091601 Or2h1b ENSMUST00000219235 ENSMUSP00000151672 TRANSLATION protein_coding - CCDS28736.1 5 312.0 0.0 2.5 7.9 168.7 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000091601 Or2h1b ENSMUST00000208003 ENSMUSP00000146548 TRANSLATION nonsense_mediated_decay start - 3 172.0 0.0 1.0 0.0 79.1 3.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000025730 Rab40c ENSMUST00000166619 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025730 Rab40c ENSMUST00000167626 ENSMUSP00000127546 TRANSLATION protein_coding - CCDS28537.1 1 281.0 16.0 3.85 33.8 166.2 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000025730 Rab40c ENSMUST00000164982 ENSMUSP00000127868 TRANSLATION protein_coding - - 5 262.0 12.0 3.45 1.0 116.0 0.0 -4,-7 0.0092 4 11.526 MINOR ENSMUSG00000025730 Rab40c ENSMUST00000167018 ENSMUSP00000131055 TRANSLATION protein_coding stop - 1 278.0 16.0 3.85 33.8 166.2 0.0 -4,-7 0.8575 5 -2.0 MINOR ENSMUSG00000025730 Rab40c ENSMUST00000166146 ENSMUSP00000132355 TRANSLATION nonsense_mediated_decay - - 1 56.0 8.0 0.6 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025730 Rab40c ENSMUST00000172168 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025730 Rab40c ENSMUST00000026826 ENSMUSP00000026826 TRANSLATION protein_coding - CCDS28537.1 1 281.0 16.0 3.85 33.8 166.2 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000025730 Rab40c ENSMUST00000164738 ENSMUSP00000130093 TRANSLATION protein_coding stop - 5 111.0 9.0 2.85 0.0 84.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000071073 Lrrc73 ENSMUST00000233341 - NO_TRANSLATION retained_intron ENSMUSG00000071073 Lrrc73 ENSMUST00000233543 ENSMUSP00000156631 TRANSLATION nonsense_mediated_decay - - - 188.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.004 2 -2.0 MINOR ENSMUSG00000071073 Lrrc73 ENSMUST00000095262 ENSMUSP00000092896 TRANSLATION protein_coding - - 1 289.0 0.0 4.49 0.0 0.0 0.0 -4,-5 0.0085 4 4.122 MINOR ENSMUSG00000071073 Lrrc73 ENSMUST00000233692 ENSMUSP00000156533 TRANSLATION protein_coding - CCDS50123.1 - 316.0 0.0 5.43 15.9 0.0 0.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000025728 Pigq ENSMUST00000133650 ENSMUSP00000117102 TRANSLATION protein_coding start - 5 452.0 0.0 7.41 0.0 226.0 12.0 -4,-7 0.0311 2 -2.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000148045 - NO_TRANSLATION retained_intron ENSMUSG00000025728 Pigq ENSMUST00000208071 ENSMUSP00000146387 TRANSLATION protein_coding - - 5 516.0 0.0 6.91 0.0 226.0 12.0 -4,-6 0.029 3 8.838 MINOR ENSMUSG00000025728 Pigq ENSMUST00000208043 ENSMUSP00000146704 TRANSLATION protein_coding - CCDS28538.1 5 581.0 0.0 8.49 13.9 226.0 12.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000025728 Pigq ENSMUST00000139078 - NO_TRANSLATION retained_intron ENSMUSG00000025728 Pigq ENSMUST00000156924 - NO_TRANSLATION retained_intron ENSMUSG00000025728 Pigq ENSMUST00000148382 ENSMUSP00000119871 TRANSLATION protein_coding stop - 3 63.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000148307 ENSMUSP00000118632 TRANSLATION protein_coding stop - 2 106.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000237570 ENSMUSP00000157676 TRANSLATION protein_coding - - - 516.0 0.0 6.91 0.0 226.0 12.0 -4,-6 0.029 3 8.838 MINOR ENSMUSG00000025728 Pigq ENSMUST00000145745 ENSMUSP00000119772 TRANSLATION protein_coding stop - 2 200.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000207073 ENSMUSP00000146634 TRANSLATION protein_coding start - 5 139.0 0.0 3.58 0.0 48.7 2.0 -4,0 0.0003 1 -2.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000208242 ENSMUSP00000147041 TRANSLATION nonsense_mediated_decay start - 1 86.0 0.0 1.25 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000208499 ENSMUSP00000146415 TRANSLATION protein_coding start/stop - 1 35.0 0.0 0.0 0.0 0.0 1.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000207496 ENSMUSP00000147200 TRANSLATION nonsense_mediated_decay start - 5 102.0 0.0 3.16 0.0 142.1 4.0 -1,-3 0.0021 - -2.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000207777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025728 Pigq ENSMUST00000135253 ENSMUSP00000122239 TRANSLATION protein_coding start/stop - 5 227.0 0.0 4.58 0.0 0.0 10.0 3,-2 0.0049 - -2.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000026823 ENSMUSP00000026823 TRANSLATION protein_coding - CCDS28538.1 1 581.0 0.0 8.49 13.9 226.0 12.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000025728 Pigq ENSMUST00000140304 ENSMUSP00000146785 TRANSLATION protein_coding - - 1 378.0 0.0 1.25 0.0 0.0 4.0 -4,-6 0.0038 2 0.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000123929 ENSMUSP00000120852 TRANSLATION nonsense_mediated_decay start - 3 45.0 0.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025728 Pigq ENSMUST00000124032 - NO_TRANSLATION retained_intron ENSMUSG00000025728 Pigq ENSMUST00000097368 ENSMUSP00000094981 TRANSLATION protein_coding - CCDS70774.1 1 641.0 0.0 8.49 0.0 210.3 12.0 -4,-6 0.1376 3 11.058 MINOR ENSMUSG00000025728 Pigq ENSMUST00000139226 ENSMUSP00000115447 TRANSLATION protein_coding stop - 5 248.0 0.0 0.0 0.0 0.0 2.0 -4,-6 0.0027 2 -2.0 MINOR ENSMUSG00000002767 Mrpl2 ENSMUST00000113429 ENSMUSP00000109056 TRANSLATION protein_coding - - 1 247.0 0.0 2.8 0.0 99.5 0.0 1,-3 0.0008 2 2.0 MINOR ENSMUSG00000002767 Mrpl2 ENSMUST00000002844 ENSMUSP00000002844 TRANSLATION protein_coding - CCDS37638.1 1 306.0 0.0 6.05 11.3 198.0 0.0 1,-3 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000002767 Mrpl2 ENSMUST00000156464 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002767 Mrpl2 ENSMUST00000146183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002767 Mrpl2 ENSMUST00000113430 ENSMUSP00000109057 TRANSLATION protein_coding - - 5 304.0 0.0 6.05 11.3 198.0 0.0 1,-3 0.8448 5 11.0 ALTERNATIVE:1 ENSMUSG00000092511 Gm20547 ENSMUST00000146299 ENSMUSP00000117677 TRANSLATION protein_coding,RT - - 5 1276.0 8.0 24.0 0.0 539.8 0.0 3,-2 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000092511 Gm20547 ENSMUST00000129891 ENSMUSP00000120864 TRANSLATION protein_coding,RT start - 5 971.0 8.0 22.0 0.0 471.1 0.0 -4,-5 0.0533 - -2.0 ALTERNATIVE:2 ENSMUSG00000023905 Tnfrsf12a ENSMUST00000233040 - NO_TRANSLATION retained_intron ENSMUSG00000023905 Tnfrsf12a ENSMUST00000233814 ENSMUSP00000156786 TRANSLATION protein_coding - - - 83.0 7.0 1.2 0.0 85.4 0.0 3,-2 0.0006 - 8.268 MINOR ENSMUSG00000023905 Tnfrsf12a ENSMUST00000167059 ENSMUSP00000131574 TRANSLATION protein_coding - CCDS50011.1 2 94.0 0.0 1.0 0.0 137.3 2.0 1,-3 0.0417 - 3.006 MINOR ENSMUSG00000023905 Tnfrsf12a ENSMUST00000024698 ENSMUSP00000024698 TRANSLATION protein_coding - CCDS28456.1 1 129.0 9.0 2.0 0.4 237.2 2.0 3,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000023905 Tnfrsf12a ENSMUST00000233428 ENSMUSP00000156767 TRANSLATION protein_coding - - - 139.0 0.0 0.2 0.0 39.6 0.0 2,-2 0.0016 - 0.6 MINOR ENSMUSG00000023905 Tnfrsf12a ENSMUST00000233754 - NO_TRANSLATION retained_intron ENSMUSG00000023829 Slc22a1 ENSMUST00000024596 ENSMUSP00000024596 TRANSLATION protein_coding - CCDS28393.1 1 556.0 0.0 6.665 20.7 108.5 12.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000023829 Slc22a1 ENSMUST00000233691 ENSMUSP00000156652 TRANSLATION nonsense_mediated_decay - - - 141.0 0.0 0.165 0.0 0.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000023829 Slc22a1 ENSMUST00000233601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024334 H2-Oa ENSMUST00000236684 - NO_TRANSLATION retained_intron ENSMUSG00000024334 H2-Oa ENSMUST00000025192 ENSMUSP00000025192 TRANSLATION protein_coding - CCDS37577.1 1 250.0 0.0 3.0 5.5 184.5 0.0 2,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000024334 H2-Oa ENSMUST00000174670 - NO_TRANSLATION retained_intron ENSMUSG00000024065 Ehd3 ENSMUST00000024860 ENSMUSP00000024860 TRANSLATION protein_coding - CCDS28966.1 1 535.0 16.0 5.33 35.8 109.9 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000024065 Ehd3 ENSMUST00000233212 - NO_TRANSLATION retained_intron ENSMUSG00000046173 Pabpc6 ENSMUST00000057190 ENSMUSP00000050792 TRANSLATION protein_coding - CCDS49946.1 - 643.0 0.0 0.8 0.1 384.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024399 Ltb ENSMUST00000173600 ENSMUSP00000134706 TRANSLATION protein_coding - - 5 185.0 0.0 1.4 0.0 117.2 0.0 -4,-5 0.0444 - 8.0 ALTERNATIVE:2 ENSMUSG00000024399 Ltb ENSMUST00000173510 - NO_TRANSLATION retained_intron ENSMUSG00000024399 Ltb ENSMUST00000025262 ENSMUSP00000025262 TRANSLATION protein_coding - CCDS28690.1 1 306.0 0.0 1.4 0.4 117.2 0.0 -4,-7 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000042099 Kank3 ENSMUST00000173958 - NO_TRANSLATION retained_intron ENSMUSG00000042099 Kank3 ENSMUST00000234357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042099 Kank3 ENSMUST00000048560 ENSMUSP00000040126 TRANSLATION protein_coding - CCDS28630.1 1 791.0 0.0 6.632 0.0 142.1 0.0 -4,-5 1.0 17 12.0 PRINCIPAL:1 ENSMUSG00000042099 Kank3 ENSMUST00000172649 ENSMUSP00000133760 TRANSLATION protein_coding - - 1 603.0 0.0 6.5 0.0 69.6 0.0 -4,-7 0.03 14 7.386 MINOR ENSMUSG00000042099 Kank3 ENSMUST00000234152 - NO_TRANSLATION retained_intron ENSMUSG00000042099 Kank3 ENSMUST00000174608 ENSMUSP00000134656 TRANSLATION protein_coding start - 2 62.0 0.0 1.75 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000042099 Kank3 ENSMUST00000234426 ENSMUSP00000157095 TRANSLATION nonsense_mediated_decay - - - 47.0 0.0 0.132 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042099 Kank3 ENSMUST00000173789 ENSMUSP00000133625 TRANSLATION protein_coding - - 1 173.0 0.0 3.882 0.0 75.5 0.0 -4,-5 0.0 1 2.502 MINOR ENSMUSG00000042099 Kank3 ENSMUST00000234655 - NO_TRANSLATION retained_intron ENSMUSG00000042099 Kank3 ENSMUST00000173649 - NO_TRANSLATION retained_intron ENSMUSG00000043311 D17H6S53E ENSMUST00000174311 - NO_TRANSLATION retained_intron ENSMUSG00000043311 D17H6S53E ENSMUST00000061859 ENSMUSP00000061264 TRANSLATION protein_coding - CCDS28686.1 3 293.0 0.0 0.5 7.9 457.1 0.0 -4,-2 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000024402 Lta ENSMUST00000025266 ENSMUSP00000025266 TRANSLATION protein_coding - CCDS28692.1 1 202.0 0.0 1.5 7.3 116.9 0.0 3,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000011305 Plin5 ENSMUST00000019808 ENSMUSP00000019808 TRANSLATION protein_coding - CCDS37662.1 1 463.0 0.0 0.4 0.3 391.2 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000011305 Plin5 ENSMUST00000113072 ENSMUSP00000108695 TRANSLATION protein_coding - CCDS37662.1 1 463.0 0.0 0.4 0.3 391.2 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000091407 Vmn2r117 ENSMUST00000234002 ENSMUSP00000157019 TRANSLATION nonsense_mediated_decay - - - 71.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000091407 Vmn2r117 ENSMUST00000234323 ENSMUSP00000157295 TRANSLATION nonsense_mediated_decay - - - 81.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000091407 Vmn2r117 ENSMUST00000171996 ENSMUSP00000126885 TRANSLATION protein_coding - CCDS50010.1 1 857.0 4.0 1.97 0.1 371.9 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040097 Flywch1 ENSMUST00000086325 ENSMUSP00000083505 TRANSLATION protein_coding - CCDS28463.1 1 673.0 20.0 1.3 0.0 370.9 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000040097 Flywch1 ENSMUST00000226460 ENSMUSP00000154742 TRANSLATION protein_coding stop - - 96.0 0.0 0.0 0.0 32.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040097 Flywch1 ENSMUST00000045517 ENSMUSP00000040022 TRANSLATION protein_coding - CCDS28463.1 1 673.0 20.0 1.3 0.0 370.9 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000040097 Flywch1 ENSMUST00000227733 - NO_TRANSLATION retained_intron ENSMUSG00000040097 Flywch1 ENSMUST00000227120 ENSMUSP00000154618 TRANSLATION protein_coding start - - 631.0 20.0 1.3 0.0 339.5 0.0 -4,-5 0.1253 - -2.0 MINOR ENSMUSG00000092243 Gm7030 ENSMUST00000172968 ENSMUSP00000133748 TRANSLATION protein_coding - CCDS50101.1 5 285.0 0.0 3.0 0.0 316.5 0.0 3,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000092243 Gm7030 ENSMUST00000046131 ENSMUSP00000040558 TRANSLATION protein_coding - CCDS50101.1 5 285.0 0.0 3.0 0.0 316.5 0.0 3,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000092243 Gm7030 ENSMUST00000173322 ENSMUSP00000133734 TRANSLATION protein_coding - CCDS50101.1 1 285.0 0.0 3.0 0.0 316.5 0.0 3,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095377 Or2h1 ENSMUST00000216376 ENSMUSP00000149656 TRANSLATION protein_coding - CCDS50107.1 5 312.0 0.0 1.0 9.6 168.7 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095377 Or2h1 ENSMUST00000087144 ENSMUSP00000129446 TRANSLATION protein_coding - CCDS50107.1 - 312.0 0.0 1.0 9.6 168.7 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095377 Or2h1 ENSMUST00000217372 ENSMUSP00000150298 TRANSLATION protein_coding - CCDS50107.1 5 312.0 0.0 1.0 9.6 168.7 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053347 Zfp943 ENSMUST00000055349 ENSMUSP00000059554 TRANSLATION protein_coding - CCDS49997.1 1 507.0 44.0 2.0 0.0 323.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000053347 Zfp943 ENSMUST00000153985 ENSMUSP00000115817 TRANSLATION protein_coding - - 1 73.0 0.0 1.3 0.0 83.8 0.0 -4,-6 0.0 - 3.9 MINOR ENSMUSG00000053347 Zfp943 ENSMUST00000174015 ENSMUSP00000133735 TRANSLATION nonsense_mediated_decay - - 1 60.0 0.0 1.165 0.0 83.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000096009 Or2n1 ENSMUST00000074883 ENSMUSP00000074423 TRANSLATION protein_coding - CCDS28777.1 - 312.0 0.0 1.0 9.9 169.5 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096009 Or2n1 ENSMUST00000215900 ENSMUSP00000151069 TRANSLATION protein_coding - CCDS28777.1 5 312.0 0.0 1.0 9.9 169.5 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041831 Sytl3 ENSMUST00000231743 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041831 Sytl3 ENSMUST00000232151 - NO_TRANSLATION retained_intron ENSMUSG00000041831 Sytl3 ENSMUST00000159394 ENSMUSP00000124146 TRANSLATION nonsense_mediated_decay - - 2 141.0 8.0 1.3 0.0 59.1 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000041831 Sytl3 ENSMUST00000160483 ENSMUSP00000123996 TRANSLATION protein_coding - CCDS28373.2 1 402.0 0.0 3.3 2.0 115.1 0.0 -4,-6 0.0603 6 3.744 MINOR ENSMUSG00000041831 Sytl3 ENSMUST00000097430 ENSMUSP00000095041 TRANSLATION protein_coding - CCDS28372.2 1 607.0 8.0 5.075 7.3 198.8 0.0 -4,-5 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000041831 Sytl3 ENSMUST00000115763 ENSMUSP00000111429 TRANSLATION nonsense_mediated_decay - - 5 178.0 8.0 2.275 0.0 83.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041831 Sytl3 ENSMUST00000160771 - NO_TRANSLATION retained_intron ENSMUSG00000041831 Sytl3 ENSMUST00000161118 - NO_TRANSLATION retained_intron ENSMUSG00000041831 Sytl3 ENSMUST00000232362 - NO_TRANSLATION retained_intron ENSMUSG00000041831 Sytl3 ENSMUST00000162635 ENSMUSP00000124496 TRANSLATION nonsense_mediated_decay - - 2 179.0 8.0 1.775 0.0 83.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041831 Sytl3 ENSMUST00000162013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045053 Kcng3 ENSMUST00000234613 ENSMUSP00000157121 TRANSLATION protein_coding - - - 422.0 0.0 0.965 11.7 207.7 3.0 -4,-1 0.735 - 14.868 MINOR ENSMUSG00000045053 Kcng3 ENSMUST00000051482 ENSMUSP00000054910 TRANSLATION protein_coding - CCDS28996.1 1 433.0 0.0 1.031 13.7 209.7 3.0 -4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000043705 Capn13 ENSMUST00000233432 - NO_TRANSLATION retained_intron ENSMUSG00000043705 Capn13 ENSMUST00000095208 ENSMUSP00000092832 TRANSLATION protein_coding - CCDS37690.1 5 665.0 12.0 10.95 3.0 392.6 0.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000049620 Prss33 ENSMUST00000059906 ENSMUSP00000059491 TRANSLATION protein_coding - CCDS37476.2 1 277.0 5.0 3.798 3.7 230.2 0.0 1,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000049620 Prss33 ENSMUST00000164140 - NO_TRANSLATION retained_intron ENSMUSG00000049620 Prss33 ENSMUST00000115444 ENSMUSP00000111104 TRANSLATION nonsense_mediated_decay - - 1 110.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000073457 Smok2b ENSMUST00000162940 ENSMUSP00000124967 TRANSLATION protein_coding - CCDS49952.1 5 484.0 18.0 0.5 0.0 244.9 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000073457 Smok2b ENSMUST00000059824 ENSMUSP00000061516 TRANSLATION protein_coding - CCDS49952.1 - 484.0 18.0 0.5 0.0 244.9 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000034998 Foxn2 ENSMUST00000155640 ENSMUSP00000116123 TRANSLATION protein_coding stop - 2 103.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034998 Foxn2 ENSMUST00000112238 ENSMUSP00000107857 TRANSLATION protein_coding - CCDS29022.2 1 429.0 0.0 1.5 4.9 113.7 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000034998 Foxn2 ENSMUST00000134107 - NO_TRANSLATION retained_intron ENSMUSG00000034998 Foxn2 ENSMUST00000141052 ENSMUSP00000118378 TRANSLATION nonsense_mediated_decay - - 2 208.0 0.0 1.0 0.0 101.4 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000024298 Zfp871 ENSMUST00000168337 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024298 Zfp871 ENSMUST00000057501 ENSMUSP00000050501 TRANSLATION protein_coding - CCDS84294.1 1 596.0 60.0 0.8 0.1 287.0 0.0 -4,-5 0.3596 3 15.456 MINOR ENSMUSG00000024298 Zfp871 ENSMUST00000159086 ENSMUSP00000127178 TRANSLATION protein_coding - CCDS50061.1 1 615.0 60.0 0.8 0.4 329.4 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000002617 Zfp40 ENSMUST00000151447 ENSMUSP00000120756 TRANSLATION protein_coding stop - 2 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0111 - -2.0 MINOR ENSMUSG00000002617 Zfp40 ENSMUST00000037057 ENSMUSP00000039794 TRANSLATION protein_coding - CCDS37473.1 1 796.0 75.0 0.8 0.1 406.0 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000002617 Zfp40 ENSMUST00000172177 ENSMUSP00000128758 TRANSLATION protein_coding - CCDS37473.1 5 796.0 75.0 0.8 0.1 406.0 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000002617 Zfp40 ENSMUST00000135840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002617 Zfp40 ENSMUST00000142999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002617 Zfp40 ENSMUST00000140313 ENSMUSP00000121359 TRANSLATION protein_coding - - 1 728.0 75.0 0.8 0.0 334.8 0.0 -4,-5 0.1413 - 13.728 MINOR ENSMUSG00000034116 Vav1 ENSMUST00000008847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034116 Vav1 ENSMUST00000174878 - NO_TRANSLATION retained_intron ENSMUSG00000034116 Vav1 ENSMUST00000005889 ENSMUSP00000005889 TRANSLATION protein_coding - CCDS28931.1 1 845.0 8.0 22.53 15.1 445.5 0.0 -4,-7 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000034116 Vav1 ENSMUST00000169220 ENSMUSP00000126694 TRANSLATION protein_coding - CCDS50158.1 1 821.0 8.0 21.78 0.0 405.9 0.0 -4,-7 0.172 19 14.124 MINOR ENSMUSG00000034116 Vav1 ENSMUST00000112870 ENSMUSP00000108491 TRANSLATION protein_coding - CCDS50159.1 1 806.0 8.0 21.53 0.0 386.5 0.0 -4,-7 0.1362 18 12.462 MINOR ENSMUSG00000024146 Cript ENSMUST00000160269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024146 Cript ENSMUST00000024959 ENSMUSP00000024959 TRANSLATION protein_coding - CCDS29012.1 1 101.0 4.0 3.33 36.9 123.2 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000024146 Cript ENSMUST00000160824 - NO_TRANSLATION retained_intron ENSMUSG00000059030 Or14j7 ENSMUST00000216440 ENSMUSP00000151065 TRANSLATION protein_coding - CCDS28770.1 5 308.0 0.0 1.0 0.8 157.7 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059030 Or14j7 ENSMUST00000080231 ENSMUSP00000079121 TRANSLATION protein_coding - CCDS28770.1 - 308.0 0.0 1.0 0.8 157.7 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024187 Fam234a ENSMUST00000234262 ENSMUSP00000157155 TRANSLATION protein_coding - CCDS37512.1 - 555.0 8.0 0.0 11.6 0.0 1.0 -4,-5 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000024187 Fam234a ENSMUST00000234554 ENSMUSP00000157362 TRANSLATION protein_coding - CCDS37512.1 - 555.0 8.0 0.0 11.6 0.0 1.0 -4,-5 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000024187 Fam234a ENSMUST00000114988 ENSMUSP00000110639 TRANSLATION protein_coding - CCDS37512.1 1 555.0 8.0 0.0 11.6 0.0 1.0 -4,-5 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000024187 Fam234a ENSMUST00000234687 ENSMUSP00000157219 TRANSLATION protein_coding - CCDS37512.1 - 555.0 8.0 0.0 11.6 0.0 1.0 -4,-5 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000024187 Fam234a ENSMUST00000141240 ENSMUSP00000115724 TRANSLATION protein_coding - - 5 549.0 8.0 0.0 1.5 0.0 1.0 -4,-5 0.2562 12 6.141 MINOR ENSMUSG00000024187 Fam234a ENSMUST00000234175 ENSMUSP00000157032 TRANSLATION protein_coding - CCDS37512.1 - 555.0 8.0 0.0 11.6 0.0 1.0 -4,-5 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000024187 Fam234a ENSMUST00000151293 ENSMUSP00000117020 TRANSLATION protein_coding stop - 5 102.0 0.0 0.0 0.0 0.0 1.0 -4,-5 0.0131 2 -2.0 MINOR ENSMUSG00000024187 Fam234a ENSMUST00000118487 ENSMUSP00000113418 TRANSLATION protein_coding - CCDS37512.1 1 555.0 8.0 0.0 11.6 0.0 1.0 -4,-5 1.0 12 9.0 PRINCIPAL:1 ENSMUSG00000024187 Fam234a ENSMUST00000153582 - NO_TRANSLATION retained_intron ENSMUSG00000092277 Gm19684 ENSMUST00000173128 ENSMUSP00000134339 TRANSLATION protein_coding - - 1 117.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000039518 Cdsn ENSMUST00000044804 ENSMUSP00000048596 TRANSLATION protein_coding - CCDS28699.1 1 561.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.971 12 0.0 PRINCIPAL:1 ENSMUSG00000005823 Gpr108 ENSMUST00000005975 ENSMUSP00000005975 TRANSLATION protein_coding - - 1 562.0 0.0 0.0 0.3 322.7 2.0 -1,-4 0.7844 3 2.0 PRINCIPAL:4 ENSMUSG00000005823 Gpr108 ENSMUST00000233568 ENSMUSP00000156910 TRANSLATION protein_coding - CCDS28929.1 - 569.0 0.0 0.0 0.1 322.7 2.0 -1,-4 0.6163 3 2.0 ALTERNATIVE:2 ENSMUSG00000005823 Gpr108 ENSMUST00000233492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005823 Gpr108 ENSMUST00000232778 - NO_TRANSLATION retained_intron ENSMUSG00000063240 Or2n1b ENSMUST00000113636 ENSMUSP00000109266 TRANSLATION protein_coding - CCDS28776.1 - 312.0 0.0 2.0 9.9 175.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063240 Or2n1b ENSMUST00000215549 ENSMUSP00000150597 TRANSLATION protein_coding - CCDS28776.1 5 312.0 0.0 2.0 9.9 175.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063240 Or2n1b ENSMUST00000173610 ENSMUSP00000133824 TRANSLATION protein_coding stop - 3 95.0 0.0 1.0 0.0 34.4 4.0 -4,-7 0.0037 - -2.0 MINOR ENSMUSG00000063240 Or2n1b ENSMUST00000215078 ENSMUSP00000149451 TRANSLATION protein_coding - CCDS28776.1 5 312.0 0.0 2.0 9.9 175.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000090877 Hspa1b ENSMUST00000172753 ENSMUSP00000133815 TRANSLATION protein_coding - CCDS37592.1 - 642.0 20.0 1.0 25.9 865.4 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000080990 Or10al2 ENSMUST00000216551 ENSMUSP00000151212 TRANSLATION protein_coding - CCDS28760.1 5 321.0 0.0 1.0 1.5 193.1 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000080990 Or10al2 ENSMUST00000215811 ENSMUSP00000150176 TRANSLATION protein_coding - CCDS28760.1 5 321.0 0.0 1.0 1.5 193.1 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000080990 Or10al2 ENSMUST00000122036 ENSMUSP00000113988 TRANSLATION protein_coding - CCDS28760.1 - 321.0 0.0 1.0 1.5 193.1 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000073400 Trim10 ENSMUST00000060524 ENSMUSP00000057928 TRANSLATION protein_coding - CCDS37614.1 1 489.0 16.0 3.528 1.5 192.2 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000023966 Rsph9 ENSMUST00000152354 - NO_TRANSLATION retained_intron ENSMUSG00000023966 Rsph9 ENSMUST00000024762 ENSMUSP00000024762 TRANSLATION protein_coding - CCDS28820.1 1 276.0 0.0 5.5 0.0 26.4 0.0 -3,-6 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000023966 Rsph9 ENSMUST00000148581 ENSMUSP00000116960 TRANSLATION protein_coding start - 3 80.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000037805 Rpl10a ENSMUST00000233427 ENSMUSP00000156947 TRANSLATION protein_coding - - - 216.0 0.0 5.7 32.0 149.4 0.0 -4,-7 0.8518 10 12.0 ALTERNATIVE:1 ENSMUSG00000037805 Rpl10a ENSMUST00000141049 - NO_TRANSLATION retained_intron ENSMUSG00000037805 Rpl10a ENSMUST00000233895 ENSMUSP00000156823 TRANSLATION protein_coding - - - 118.0 0.0 2.2 0.0 37.6 0.0 -4,-7 0.0 6 0.0 MINOR ENSMUSG00000037805 Rpl10a ENSMUST00000232920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037805 Rpl10a ENSMUST00000232867 ENSMUSP00000156828 TRANSLATION protein_coding stop - - 164.0 0.0 4.03 0.0 35.6 0.0 -4,-7 0.0008 7 -2.0 MINOR ENSMUSG00000037805 Rpl10a ENSMUST00000233852 - NO_TRANSLATION retained_intron ENSMUSG00000037805 Rpl10a ENSMUST00000129935 ENSMUSP00000114141 TRANSLATION nonsense_mediated_decay - - 3 58.0 0.0 1.2 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000037805 Rpl10a ENSMUST00000233937 ENSMUSP00000156950 TRANSLATION protein_coding - - - 190.0 0.0 4.95 0.0 127.0 0.0 -4,-6 0.0013 8 4.5 MINOR ENSMUSG00000037805 Rpl10a ENSMUST00000232770 - NO_TRANSLATION retained_intron ENSMUSG00000037805 Rpl10a ENSMUST00000233842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037805 Rpl10a ENSMUST00000233014 ENSMUSP00000156409 TRANSLATION nonsense_mediated_decay - - - 54.0 0.0 1.2 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000037805 Rpl10a ENSMUST00000143443 - NO_TRANSLATION retained_intron ENSMUSG00000037805 Rpl10a ENSMUST00000128758 - NO_TRANSLATION retained_intron ENSMUSG00000037805 Rpl10a ENSMUST00000150103 - NO_TRANSLATION retained_intron ENSMUSG00000037805 Rpl10a ENSMUST00000152665 - NO_TRANSLATION retained_intron ENSMUSG00000037805 Rpl10a ENSMUST00000042334 ENSMUSP00000048469 TRANSLATION protein_coding - CCDS28576.1 1 217.0 0.0 5.7 32.0 149.4 0.0 -4,-7 1.0 10 12.0 PRINCIPAL:4 ENSMUSG00000002769 Gnmt ENSMUST00000233086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002769 Gnmt ENSMUST00000002846 ENSMUSP00000002846 TRANSLATION protein_coding - CCDS28838.1 1 293.0 21.0 6.0 29.5 52.3 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000002769 Gnmt ENSMUST00000147112 - NO_TRANSLATION retained_intron ENSMUSG00000047150 1700001C19Rik ENSMUST00000061885 ENSMUSP00000050873 TRANSLATION protein_coding - CCDS28849.1 1 210.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.1191 1 0.0 MINOR ENSMUSG00000047150 1700001C19Rik ENSMUST00000125507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047150 1700001C19Rik ENSMUST00000073143 ENSMUSP00000072887 TRANSLATION protein_coding - CCDS84317.1 2 113.0 0.0 0.0 6.2 0.0 0.0 -4,-7 1.0 1 2.0 PRINCIPAL:1 ENSMUSG00000047150 1700001C19Rik ENSMUST00000160678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024143 Rhoq ENSMUST00000024956 ENSMUSP00000024956 TRANSLATION protein_coding - CCDS29010.1 1 205.0 22.0 5.0 32.0 172.9 0.0 -3,-6 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000024143 Rhoq ENSMUST00000139344 ENSMUSP00000116780 TRANSLATION protein_coding stop - 5 153.0 19.0 4.0 0.0 144.0 0.0 -3,-6 0.0015 1 -2.0 MINOR ENSMUSG00000024143 Rhoq ENSMUST00000234309 ENSMUSP00000157092 TRANSLATION protein_coding - - - 94.0 8.0 2.0 0.0 32.5 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000024007 Ppil1 ENSMUST00000234315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024007 Ppil1 ENSMUST00000135123 ENSMUSP00000115705 TRANSLATION nonsense_mediated_decay - - 5 64.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024007 Ppil1 ENSMUST00000234880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024007 Ppil1 ENSMUST00000129157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024007 Ppil1 ENSMUST00000024802 ENSMUSP00000024802 TRANSLATION protein_coding - CCDS28593.1 1 166.0 8.0 3.25 33.4 172.0 0.0 -4,-6 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000024007 Ppil1 ENSMUST00000136811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024007 Ppil1 ENSMUST00000234139 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023947 Nfkbie ENSMUST00000024742 ENSMUSP00000024742 TRANSLATION protein_coding - CCDS28811.1 1 364.0 0.0 3.86 7.7 85.1 0.0 -4,-5 1.0 6 13.85 PRINCIPAL:1 ENSMUSG00000023947 Nfkbie ENSMUST00000233379 - NO_TRANSLATION retained_intron ENSMUSG00000023947 Nfkbie ENSMUST00000233929 ENSMUSP00000156580 TRANSLATION protein_coding - - - 371.0 0.0 3.935 0.0 85.1 0.0 -4,-5 0.0687 5 12.0 MINOR ENSMUSG00000003200 Sh3gl1 ENSMUST00000233034 - NO_TRANSLATION retained_intron ENSMUSG00000003200 Sh3gl1 ENSMUST00000003268 ENSMUSP00000003268 TRANSLATION protein_coding - CCDS28891.1 1 368.0 0.0 6.7 29.3 315.2 0.0 -4,-6 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000003200 Sh3gl1 ENSMUST00000233803 ENSMUSP00000156570 TRANSLATION protein_coding - - - 247.0 0.0 5.7 0.0 265.1 0.0 -4,-6 0.0002 9 6.996 MINOR ENSMUSG00000024251 Thada ENSMUST00000235126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024251 Thada ENSMUST00000234529 - NO_TRANSLATION retained_intron ENSMUSG00000024251 Thada ENSMUST00000234724 - NO_TRANSLATION retained_intron ENSMUSG00000024251 Thada ENSMUST00000234313 - NO_TRANSLATION retained_intron ENSMUSG00000024251 Thada ENSMUST00000234134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024251 Thada ENSMUST00000234547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024251 Thada ENSMUST00000047524 ENSMUSP00000041701 TRANSLATION protein_coding - CCDS50198.1 1 1938.0 0.0 0.0 0.4 311.4 0.0 -4,-6 1.0 29 6.0 PRINCIPAL:1 ENSMUSG00000023999 Kif6 ENSMUST00000162419 - NO_TRANSLATION retained_intron ENSMUSG00000023999 Kif6 ENSMUST00000160049 - NO_TRANSLATION retained_intron ENSMUSG00000023999 Kif6 ENSMUST00000024798 - NO_TRANSLATION retained_intron ENSMUSG00000023999 Kif6 ENSMUST00000159396 - NO_TRANSLATION retained_intron ENSMUSG00000023999 Kif6 ENSMUST00000162029 ENSMUSP00000125227 TRANSLATION nonsense_mediated_decay - - 5 84.0 3.0 1.295 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000023999 Kif6 ENSMUST00000159354 - NO_TRANSLATION retained_intron ENSMUSG00000023999 Kif6 ENSMUST00000162854 ENSMUSP00000124674 TRANSLATION protein_coding - CCDS50144.1 5 802.0 11.0 7.095 0.1 321.1 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000054666 Or10h28 ENSMUST00000215466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054666 Or10h28 ENSMUST00000067840 ENSMUSP00000067207 TRANSLATION protein_coding - CCDS37563.1 - 316.0 0.0 1.0 7.9 171.7 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000054666 Or10h28 ENSMUST00000217023 ENSMUSP00000150323 TRANSLATION protein_coding - CCDS37563.1 5 316.0 0.0 1.0 7.9 171.7 7.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000092074 Dynlt1a ENSMUST00000232591 - NO_TRANSLATION retained_intron ENSMUSG00000092074 Dynlt1a ENSMUST00000169415 ENSMUSP00000127990 TRANSLATION protein_coding - CCDS49935.1 1 113.0 0.0 3.33 36.9 110.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000092074 Dynlt1a ENSMUST00000232499 ENSMUSP00000156368 TRANSLATION protein_coding - - - 112.0 0.0 2.58 0.0 80.9 0.0 -4,-5 0.0188 3 8.724 MINOR ENSMUSG00000059409 Ppp2r5d ENSMUST00000233988 ENSMUSP00000156500 TRANSLATION protein_coding - - - 595.0 0.0 9.85 0.3 666.2 0.0 -4,-5 0.5935 12 8.0 ALTERNATIVE:2 ENSMUSG00000059409 Ppp2r5d ENSMUST00000233082 - NO_TRANSLATION retained_intron ENSMUSG00000059409 Ppp2r5d ENSMUST00000233757 - NO_TRANSLATION retained_intron ENSMUSG00000059409 Ppp2r5d ENSMUST00000002839 ENSMUSP00000002839 TRANSLATION protein_coding - CCDS28836.1 1 594.0 0.0 9.85 0.3 666.2 0.0 -4,-5 1.0 12 8.0 PRINCIPAL:2 ENSMUSG00000015575 Atp6v0e ENSMUST00000167352 ENSMUSP00000127552 TRANSLATION protein_coding - CCDS28554.1 1 81.0 0.0 2.33 36.9 76.0 4.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000015575 Atp6v0e ENSMUST00000236299 ENSMUSP00000158131 TRANSLATION protein_coding - - - 104.0 0.0 1.5 0.0 41.6 2.0 -1,-5 0.0007 - 7.146 MINOR ENSMUSG00000015575 Atp6v0e ENSMUST00000236867 ENSMUSP00000158156 TRANSLATION protein_coding - - - 86.0 0.0 1.33 0.0 50.5 2.0 -4,-7 0.0006 - 7.41 MINOR ENSMUSG00000015575 Atp6v0e ENSMUST00000236346 ENSMUSP00000158492 TRANSLATION protein_coding - - - 80.0 0.0 1.33 0.0 51.4 2.0 -4,-1 0.0232 - 7.482 MINOR ENSMUSG00000015575 Atp6v0e ENSMUST00000015719 ENSMUSP00000015719 TRANSLATION protein_coding - CCDS28554.1 1 81.0 0.0 2.33 36.9 76.0 4.0 -1,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000116780 Dynlt2a3 ENSMUST00000232173 ENSMUSP00000156122 TRANSLATION protein_coding - - - 132.0 0.0 0.4 0.0 0.0 0.0 -4,-7 0.0 - 1.002 MINOR ENSMUSG00000116780 Dynlt2a3 ENSMUST00000231584 ENSMUSP00000155901 TRANSLATION protein_coding - - - 139.0 0.0 1.4 2.0 40.0 0.0 -4,-7 0.0542 - 7.122 MINOR ENSMUSG00000116780 Dynlt2a3 ENSMUST00000097399 ENSMUSP00000095011 TRANSLATION protein_coding - CCDS49959.1 1 191.0 0.0 2.4 6.3 74.0 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024168 Tmem204 ENSMUST00000232699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024168 Tmem204 ENSMUST00000153745 ENSMUSP00000119536 TRANSLATION protein_coding - - 2 129.0 0.0 0.0 0.1 0.0 3.0 -1,-5 0.0421 - 0.0 MINOR ENSMUSG00000024168 Tmem204 ENSMUST00000024984 ENSMUSP00000024984 TRANSLATION protein_coding - CCDS28506.1 1 226.0 0.0 0.0 27.9 0.0 3.0 3,-2 1.0 - 4.0 PRINCIPAL:1 ENSMUSG00000024168 Tmem204 ENSMUST00000233505 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064147 Rab44 ENSMUST00000141239 ENSMUSP00000156939 TRANSLATION protein_coding stop - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000064147 Rab44 ENSMUST00000233567 - NO_TRANSLATION retained_intron ENSMUSG00000064147 Rab44 ENSMUST00000233717 ENSMUSP00000156400 TRANSLATION protein_coding - - - 973.0 21.0 4.3 0.4 165.7 0.0 -4,-7 0.2101 2 14.0 ALTERNATIVE:2 ENSMUSG00000064147 Rab44 ENSMUST00000132262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064147 Rab44 ENSMUST00000087942 ENSMUSP00000085253 TRANSLATION protein_coding - CCDS37535.1 1 725.0 21.0 4.3 0.0 165.7 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:2 ENSMUSG00000064147 Rab44 ENSMUST00000233860 - NO_TRANSLATION retained_intron ENSMUSG00000064147 Rab44 ENSMUST00000139931 ENSMUSP00000156945 TRANSLATION protein_coding start/stop - 5 263.0 21.0 4.2 0.0 165.7 0.0 -4,-5 0.058 1 -2.0 MINOR ENSMUSG00000034413 Neurl1b ENSMUST00000182897 ENSMUSP00000138417 TRANSLATION protein_coding - - 5 364.0 8.0 0.8 1.0 158.2 0.0 -4,-6 0.0189 - 9.426 MINOR ENSMUSG00000034413 Neurl1b ENSMUST00000183077 ENSMUSP00000138178 TRANSLATION protein_coding - - 5 315.0 8.0 1.2 3.5 194.7 0.0 -4,-2 0.1236 - 11.866 MINOR ENSMUSG00000034413 Neurl1b ENSMUST00000053020 ENSMUSP00000051481 TRANSLATION protein_coding - CCDS37513.1 1 546.0 8.0 1.4 7.9 298.9 0.0 -4,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000005824 Tnfsf14 ENSMUST00000005976 ENSMUSP00000005976 TRANSLATION protein_coding - CCDS28928.1 1 239.0 0.0 1.5 12.2 110.0 0.0 -4,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000044501 Zfp758 ENSMUST00000072477 ENSMUSP00000072298 TRANSLATION protein_coding stop - 1 542.0 51.0 1.0 0.0 318.9 0.0 -4,-5 0.2073 - -2.0 MINOR ENSMUSG00000044501 Zfp758 ENSMUST00000088765 ENSMUSP00000086143 TRANSLATION protein_coding - CCDS37470.1 1 551.0 51.0 1.33 0.0 318.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000044501 Zfp758 ENSMUST00000121315 ENSMUSP00000113532 TRANSLATION protein_coding - CCDS37470.1 1 551.0 51.0 1.33 0.0 318.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000044501 Zfp758 ENSMUST00000149699 ENSMUSP00000121288 TRANSLATION protein_coding - CCDS84277.1 1 583.0 51.0 1.33 0.0 318.9 0.0 -4,-2 0.4006 - 14.0 ALTERNATIVE:2 ENSMUSG00000007670 Khsrp ENSMUST00000233480 ENSMUSP00000156463 TRANSLATION protein_coding - - - 721.0 0.0 8.93 0.1 280.0 0.0 -4,-5 0.0934 29 8.0 ALTERNATIVE:2 ENSMUSG00000007670 Khsrp ENSMUST00000007814 ENSMUSP00000007814 TRANSLATION protein_coding - CCDS50157.1 1 748.0 0.0 8.93 0.4 280.0 0.0 -4,-5 1.0 29 8.0 PRINCIPAL:2 ENSMUSG00000007670 Khsrp ENSMUST00000232765 - NO_TRANSLATION retained_intron ENSMUSG00000007670 Khsrp ENSMUST00000232759 ENSMUSP00000156771 TRANSLATION protein_coding start - - 238.0 0.0 2.55 0.0 99.2 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000007670 Khsrp ENSMUST00000233246 - NO_TRANSLATION retained_intron ENSMUSG00000024459 H2-M5 ENSMUST00000176784 ENSMUSP00000135262 TRANSLATION protein_coding start - 5 327.0 0.0 4.81 0.0 273.1 2.0 -4,-7 0.0934 - -2.0 MINOR ENSMUSG00000024459 H2-M5 ENSMUST00000113667 ENSMUSP00000109297 TRANSLATION protein_coding start/stop - 1 138.0 0.0 2.33 0.0 57.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024459 H2-M5 ENSMUST00000176712 ENSMUSP00000134912 TRANSLATION protein_coding start - 5 318.0 0.0 4.81 0.0 273.1 2.0 -4,-7 0.0891 - -2.0 MINOR ENSMUSG00000024459 H2-M5 ENSMUST00000145260 - NO_TRANSLATION retained_intron ENSMUSG00000024459 H2-M5 ENSMUST00000169189 ENSMUSP00000131365 TRANSLATION protein_coding - CCDS50105.1 1 348.0 0.0 4.81 0.0 281.4 2.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000013787 Ehmt2 ENSMUST00000145624 - NO_TRANSLATION retained_intron ENSMUSG00000013787 Ehmt2 ENSMUST00000146418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013787 Ehmt2 ENSMUST00000145201 - NO_TRANSLATION retained_intron ENSMUSG00000013787 Ehmt2 ENSMUST00000013931 ENSMUSP00000013931 TRANSLATION protein_coding - CCDS28667.1 1 1263.0 32.0 17.1 3.3 278.6 0.0 -4,-7 1.0 18 15.0 PRINCIPAL:4 ENSMUSG00000013787 Ehmt2 ENSMUST00000124002 - NO_TRANSLATION retained_intron ENSMUSG00000013787 Ehmt2 ENSMUST00000097342 ENSMUSP00000094955 TRANSLATION protein_coding - CCDS70798.1 1 1229.0 32.0 17.1 3.3 278.6 0.0 -4,-7 0.8585 18 15.0 ALTERNATIVE:2 ENSMUSG00000013787 Ehmt2 ENSMUST00000172921 ENSMUSP00000134089 TRANSLATION protein_coding start/stop - 3 194.0 0.0 4.85 0.0 85.9 0.0 -4,-6 0.0004 5 -2.0 MINOR ENSMUSG00000013787 Ehmt2 ENSMUST00000137071 ENSMUSP00000134749 TRANSLATION nonsense_mediated_decay start - 5 155.0 0.0 3.5 0.0 56.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000013787 Ehmt2 ENSMUST00000124846 ENSMUSP00000121838 TRANSLATION protein_coding start/stop - 5 441.0 0.0 9.198 0.0 103.2 0.0 -4,-5 0.0006 5 -2.0 MINOR ENSMUSG00000013787 Ehmt2 ENSMUST00000150786 - NO_TRANSLATION retained_intron ENSMUSG00000013787 Ehmt2 ENSMUST00000138500 - NO_TRANSLATION retained_intron ENSMUSG00000013787 Ehmt2 ENSMUST00000131915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013787 Ehmt2 ENSMUST00000078061 ENSMUSP00000077208 TRANSLATION protein_coding - CCDS28666.1 1 1172.0 32.0 17.1 0.1 278.6 0.0 -2,-3 0.4131 18 14.0 ALTERNATIVE:2 ENSMUSG00000013787 Ehmt2 ENSMUST00000114033 ENSMUSP00000109667 TRANSLATION protein_coding - CCDS70797.1 1 1206.0 32.0 17.1 0.1 278.6 0.0 -2,-3 0.4364 18 14.0 ALTERNATIVE:2 ENSMUSG00000062743 Zfp677 ENSMUST00000056107 ENSMUSP00000052667 TRANSLATION protein_coding - CCDS28439.1 1 634.0 67.0 1.0 0.0 467.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000062743 Zfp677 ENSMUST00000162659 ENSMUSP00000125295 TRANSLATION protein_coding - CCDS28439.1 1 634.0 67.0 1.0 0.0 467.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036983 Tfb1m ENSMUST00000232131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036983 Tfb1m ENSMUST00000041003 ENSMUSP00000035291 TRANSLATION protein_coding - CCDS28363.1 1 345.0 20.0 7.0 6.3 0.0 0.0 -4,-2 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000036983 Tfb1m ENSMUST00000232051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000115113 Smim40-ps ENSMUST00000226885 ENSMUSP00000154467 TRANSLATION protein_coding - - - 81.0 0.0 1.0 0.7 0.0 0.0 -4,-6 0.6608 - 6.0 PRINCIPAL:1 ENSMUSG00000024446 Rpp21 ENSMUST00000173486 - NO_TRANSLATION retained_intron ENSMUSG00000024446 Rpp21 ENSMUST00000173122 - NO_TRANSLATION retained_intron ENSMUSG00000024446 Rpp21 ENSMUST00000025319 ENSMUSP00000025319 TRANSLATION protein_coding - CCDS28719.1 1 150.0 4.0 3.75 0.1 88.6 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000024446 Rpp21 ENSMUST00000174824 - NO_TRANSLATION retained_intron ENSMUSG00000024446 Rpp21 ENSMUST00000077535 ENSMUSP00000076739 TRANSLATION protein_coding - - 1 71.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000024446 Rpp21 ENSMUST00000172573 ENSMUSP00000133400 TRANSLATION nonsense_mediated_decay start - 3 51.0 3.0 0.75 0.0 36.8 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000011486 Slc25a41 ENSMUST00000169012 ENSMUSP00000130857 TRANSLATION protein_coding - CCDS84326.1 1 298.0 14.0 3.32 0.0 202.4 0.0 -4,-5 0.2228 - 14.0 ALTERNATIVE:2 ENSMUSG00000011486 Slc25a41 ENSMUST00000058661 ENSMUSP00000058877 TRANSLATION protein_coding - CCDS37668.1 1 312.0 14.0 3.32 0.4 202.4 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000024056 Ndc80 ENSMUST00000233552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024056 Ndc80 ENSMUST00000233750 ENSMUSP00000156954 TRANSLATION nonsense_mediated_decay - - - 60.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000024056 Ndc80 ENSMUST00000024851 ENSMUSP00000024851 TRANSLATION protein_coding - CCDS28959.1 1 642.0 0.0 5.04 12.6 165.6 0.0 -4,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000024056 Ndc80 ENSMUST00000233011 - NO_TRANSLATION retained_intron ENSMUSG00000024056 Ndc80 ENSMUST00000232863 ENSMUSP00000156492 TRANSLATION protein_coding - - - 629.0 0.0 5.04 0.0 165.6 0.0 -4,-2 0.1205 6 12.0 MINOR ENSMUSG00000024335 Brd2 ENSMUST00000237872 - NO_TRANSLATION retained_intron ENSMUSG00000024335 Brd2 ENSMUST00000173204 ENSMUSP00000138431 TRANSLATION nonsense_mediated_decay start - 3 64.0 0.0 2.0 0.0 26.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024335 Brd2 ENSMUST00000179722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024335 Brd2 ENSMUST00000236090 - NO_TRANSLATION retained_intron ENSMUSG00000024335 Brd2 ENSMUST00000151986 ENSMUSP00000117359 TRANSLATION protein_coding stop - 1 473.0 0.0 7.26 0.0 141.0 0.0 -4,-6 0.0005 8 -2.0 MINOR ENSMUSG00000024335 Brd2 ENSMUST00000025193 ENSMUSP00000025193 TRANSLATION protein_coding - CCDS28641.1 1 798.0 0.0 9.26 0.1 238.9 0.0 -4,-6 1.0 12 8.0 PRINCIPAL:2 ENSMUSG00000024335 Brd2 ENSMUST00000235313 ENSMUSP00000158176 TRANSLATION nonsense_mediated_decay start - - 132.0 0.0 2.0 0.0 26.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024335 Brd2 ENSMUST00000235347 - NO_TRANSLATION retained_intron ENSMUSG00000024335 Brd2 ENSMUST00000095347 ENSMUSP00000092990 TRANSLATION protein_coding - - 5 752.0 0.0 9.26 0.1 238.9 0.0 -4,-6 0.0846 10 8.0 ALTERNATIVE:2 ENSMUSG00000024335 Brd2 ENSMUST00000142570 - NO_TRANSLATION retained_intron ENSMUSG00000024335 Brd2 ENSMUST00000237345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024335 Brd2 ENSMUST00000155286 - NO_TRANSLATION retained_intron ENSMUSG00000024335 Brd2 ENSMUST00000173032 ENSMUSP00000134608 TRANSLATION protein_coding start/stop - 3 136.0 0.0 1.6 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024335 Brd2 ENSMUST00000154232 ENSMUSP00000128835 TRANSLATION nonsense_mediated_decay - - 5 146.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024335 Brd2 ENSMUST00000179687 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024335 Brd2 ENSMUST00000148143 - NO_TRANSLATION retained_intron ENSMUSG00000024335 Brd2 ENSMUST00000177828 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024335 Brd2 ENSMUST00000114242 ENSMUSP00000109880 TRANSLATION protein_coding - CCDS28641.1 1 798.0 0.0 9.26 0.1 238.9 0.0 -4,-6 1.0 12 8.0 PRINCIPAL:2 ENSMUSG00000024335 Brd2 ENSMUST00000236781 - NO_TRANSLATION retained_intron ENSMUSG00000033278 Ptprm ENSMUST00000225074 - NO_TRANSLATION retained_intron ENSMUSG00000033278 Ptprm ENSMUST00000224862 ENSMUSP00000153179 TRANSLATION protein_coding stop - - 160.0 0.0 2.75 0.0 34.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000033278 Ptprm ENSMUST00000037974 ENSMUSP00000045603 TRANSLATION protein_coding - - 1 1486.0 17.0 24.25 12.0 718.7 1.0 2,-3 0.8105 23 17.056 ALTERNATIVE:1 ENSMUSG00000033278 Ptprm ENSMUST00000223982 ENSMUSP00000153662 TRANSLATION protein_coding - CCDS28948.1 - 1452.0 17.0 24.25 15.4 718.7 1.0 2,-3 1.0 24 18.0 PRINCIPAL:3 ENSMUSG00000033278 Ptprm ENSMUST00000225688 - NO_TRANSLATION retained_intron ENSMUSG00000033278 Ptprm ENSMUST00000225554 ENSMUSP00000153042 TRANSLATION nonsense_mediated_decay start - - 77.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000033278 Ptprm ENSMUST00000224091 ENSMUSP00000153463 TRANSLATION protein_coding - - - 990.0 1.0 13.1 0.0 224.2 1.0 2,-3 0.0095 15 0.8 MINOR ENSMUSG00000024158 Hagh ENSMUST00000163132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024158 Hagh ENSMUST00000149716 ENSMUSP00000114838 TRANSLATION protein_coding stop - 5 132.0 5.0 4.0 0.0 33.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024158 Hagh ENSMUST00000024974 ENSMUSP00000024974 TRANSLATION protein_coding - CCDS50021.1 5 260.0 18.0 7.83 25.5 137.2 0.0 -4,-5 1.0 7 16.656 PRINCIPAL:2 ENSMUSG00000024158 Hagh ENSMUST00000169200 ENSMUSP00000126514 TRANSLATION protein_coding stop - 5 237.0 15.0 5.9175 0.0 97.9 0.0 -3,1 0.0014 8 -2.0 MINOR ENSMUSG00000024158 Hagh ENSMUST00000154363 ENSMUSP00000114672 TRANSLATION protein_coding stop - 3 123.0 3.0 2.1205 0.0 0.0 0.0 -3,1 0.0 2 -2.0 MINOR ENSMUSG00000024158 Hagh ENSMUST00000130989 ENSMUSP00000120734 TRANSLATION protein_coding stop - 3 167.0 11.0 5.0 0.0 35.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024158 Hagh ENSMUST00000118788 ENSMUSP00000113051 TRANSLATION protein_coding - CCDS28499.2 1 309.0 19.0 8.1675 11.9 137.2 0.0 -3,1 0.7176 9 15.78 ALTERNATIVE:1 ENSMUSG00000024158 Hagh ENSMUST00000164251 ENSMUSP00000129904 TRANSLATION protein_coding stop - 5 217.0 14.0 6.5 0.0 85.9 0.0 -4,-5 0.0004 6 -2.0 MINOR ENSMUSG00000024067 Dpy30 ENSMUST00000233187 ENSMUSP00000156790 TRANSLATION protein_coding - - - 47.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - 0.786 MINOR ENSMUSG00000024067 Dpy30 ENSMUST00000233581 ENSMUSP00000156795 TRANSLATION protein_coding - CCDS28970.1 - 99.0 0.0 1.91 24.9 75.6 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000024067 Dpy30 ENSMUST00000164832 ENSMUSP00000126702 TRANSLATION protein_coding - CCDS28970.1 1 99.0 0.0 1.91 24.9 75.6 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000024067 Dpy30 ENSMUST00000233059 ENSMUSP00000156471 TRANSLATION protein_coding stop - - 39.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024067 Dpy30 ENSMUST00000232687 ENSMUSP00000156830 TRANSLATION protein_coding - CCDS28970.1 - 99.0 0.0 1.91 24.9 75.6 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000024067 Dpy30 ENSMUST00000112571 ENSMUSP00000108190 TRANSLATION protein_coding - CCDS28970.1 2 99.0 0.0 1.91 24.9 75.6 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000067186 Or2h15 ENSMUST00000216804 ENSMUSP00000149593 TRANSLATION protein_coding - CCDS28775.1 5 313.0 0.0 1.0 6.0 155.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000067186 Or2h15 ENSMUST00000217361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067186 Or2h15 ENSMUST00000087128 ENSMUSP00000084368 TRANSLATION protein_coding - CCDS28775.1 - 313.0 0.0 1.0 6.0 155.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000001525 Tubb5 ENSMUST00000173253 - NO_TRANSLATION retained_intron ENSMUSG00000001525 Tubb5 ENSMUST00000134978 ENSMUSP00000134598 TRANSLATION protein_coding stop - 3 66.0 0.0 1.75 0.0 61.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000001525 Tubb5 ENSMUST00000001566 ENSMUSP00000001566 TRANSLATION protein_coding - CCDS28706.1 1 444.0 16.0 4.75 27.6 375.5 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000001525 Tubb5 ENSMUST00000156050 - NO_TRANSLATION retained_intron ENSMUSG00000040482 Dxo ENSMUST00000174569 ENSMUSP00000133448 TRANSLATION nonsense_mediated_decay start - 5 74.0 4.0 1.5775 0.0 45.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000040482 Dxo ENSMUST00000173995 ENSMUSP00000134583 TRANSLATION protein_coding stop - 2 144.0 0.0 2.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040482 Dxo ENSMUST00000180043 ENSMUSP00000137234 TRANSLATION protein_coding - CCDS28660.1 5 397.0 5.0 9.4 4.9 81.0 0.0 -4,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000040482 Dxo ENSMUST00000173644 - NO_TRANSLATION retained_intron ENSMUSG00000040482 Dxo ENSMUST00000173874 ENSMUSP00000134332 TRANSLATION protein_coding stop - 5 304.0 5.0 7.07 0.0 81.0 0.0 -4,-5 0.0069 5 -2.0 MINOR ENSMUSG00000040482 Dxo ENSMUST00000173063 ENSMUSP00000134164 TRANSLATION nonsense_mediated_decay start - 5 45.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040482 Dxo ENSMUST00000173768 - NO_TRANSLATION retained_intron ENSMUSG00000040482 Dxo ENSMUST00000174684 ENSMUSP00000134653 TRANSLATION nonsense_mediated_decay start - 5 61.0 1.0 1.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000040482 Dxo ENSMUST00000174092 ENSMUSP00000133587 TRANSLATION protein_coding - - 5 245.0 0.0 5.49 0.0 45.2 0.0 -4,-5 0.0 2 3.348 MINOR ENSMUSG00000040482 Dxo ENSMUST00000172612 ENSMUSP00000133376 TRANSLATION protein_coding start - 3 118.0 4.0 3.49 0.0 81.0 0.0 -4,-5 0.0031 1 -2.0 MINOR ENSMUSG00000040482 Dxo ENSMUST00000046244 ENSMUSP00000047018 TRANSLATION protein_coding - CCDS28660.1 1 397.0 5.0 9.4 4.9 81.0 0.0 -4,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000024136 Dnase1l2 ENSMUST00000154675 - NO_TRANSLATION retained_intron ENSMUSG00000024136 Dnase1l2 ENSMUST00000153858 - NO_TRANSLATION retained_intron ENSMUSG00000024136 Dnase1l2 ENSMUST00000129401 ENSMUSP00000117477 TRANSLATION nonsense_mediated_decay start - 3 40.0 4.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024136 Dnase1l2 ENSMUST00000088506 ENSMUSP00000085862 TRANSLATION protein_coding - CCDS37489.1 1 278.0 11.0 6.83 3.9 45.2 0.0 3,-2 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000024136 Dnase1l2 ENSMUST00000148820 ENSMUSP00000119453 TRANSLATION nonsense_mediated_decay - - 3 76.0 0.0 1.5 0.0 0.0 0.0 3,-2 0.0017 1 -2.0 MINOR ENSMUSG00000024136 Dnase1l2 ENSMUST00000119932 ENSMUSP00000113508 TRANSLATION protein_coding - CCDS37489.1 1 278.0 11.0 6.83 3.9 45.2 0.0 3,-2 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000006705 Pknox1 ENSMUST00000237887 ENSMUSP00000158053 TRANSLATION nonsense_mediated_decay start - - 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006705 Pknox1 ENSMUST00000236493 ENSMUSP00000157897 TRANSLATION protein_coding - - - 323.0 0.0 2.65 0.0 150.5 0.0 -4,-7 0.0103 2 6.826 MINOR ENSMUSG00000006705 Pknox1 ENSMUST00000175806 ENSMUSP00000134852 TRANSLATION protein_coding - CCDS28608.1 1 436.0 0.0 2.73 22.7 195.6 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000006705 Pknox1 ENSMUST00000237248 ENSMUSP00000157748 TRANSLATION protein_coding - - - 435.0 0.0 2.73 22.7 195.6 0.0 -4,-6 0.8643 2 12.0 ALTERNATIVE:1 ENSMUSG00000006705 Pknox1 ENSMUST00000235869 ENSMUSP00000157430 TRANSLATION protein_coding stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006705 Pknox1 ENSMUST00000235255 ENSMUSP00000157874 TRANSLATION protein_coding - - - 325.0 0.0 2.65 0.0 150.5 0.0 -4,-7 0.0099 2 6.826 MINOR ENSMUSG00000006705 Pknox1 ENSMUST00000176701 ENSMUSP00000135804 TRANSLATION protein_coding - CCDS28608.1 1 436.0 0.0 2.73 22.7 195.6 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000006705 Pknox1 ENSMUST00000237038 ENSMUSP00000157491 TRANSLATION protein_coding - - - 325.0 0.0 2.65 0.0 150.5 0.0 -4,-7 0.0099 2 6.826 MINOR ENSMUSG00000006705 Pknox1 ENSMUST00000235401 ENSMUSP00000157459 TRANSLATION nonsense_mediated_decay - - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006705 Pknox1 ENSMUST00000176895 - NO_TRANSLATION retained_intron ENSMUSG00000006705 Pknox1 ENSMUST00000176513 - NO_TRANSLATION retained_intron ENSMUSG00000006705 Pknox1 ENSMUST00000175812 - NO_TRANSLATION retained_intron ENSMUSG00000006705 Pknox1 ENSMUST00000097352 ENSMUSP00000094966 TRANSLATION protein_coding - CCDS28608.1 1 436.0 0.0 2.73 22.7 195.6 0.0 -4,-6 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000006705 Pknox1 ENSMUST00000237748 ENSMUSP00000158343 TRANSLATION protein_coding - - - 324.0 0.0 2.65 0.0 150.5 0.0 -4,-7 0.0099 2 6.826 MINOR ENSMUSG00000058063 Trim31 ENSMUST00000078438 ENSMUSP00000077535 TRANSLATION protein_coding - CCDS28728.1 1 507.0 13.0 2.955 0.1 121.4 0.0 -4,-5 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000002279 Lmf1 ENSMUST00000063344 ENSMUSP00000066682 TRANSLATION protein_coding - - 5 574.0 0.0 9.35 0.1 472.4 2.0 -4,-7 0.57 6 6.0 ALTERNATIVE:2 ENSMUSG00000002279 Lmf1 ENSMUST00000126164 - NO_TRANSLATION retained_intron ENSMUSG00000002279 Lmf1 ENSMUST00000116641 ENSMUSP00000112340 TRANSLATION protein_coding - CCDS37502.2 5 574.0 0.0 9.35 0.1 477.9 2.0 -4,-7 1.0 6 6.0 PRINCIPAL:2 ENSMUSG00000002279 Lmf1 ENSMUST00000142264 - NO_TRANSLATION retained_intron ENSMUSG00000002279 Lmf1 ENSMUST00000127280 - NO_TRANSLATION retained_intron ENSMUSG00000002279 Lmf1 ENSMUST00000141606 ENSMUSP00000129263 TRANSLATION protein_coding - - 2 512.0 0.0 8.35 0.0 424.9 2.0 -4,-7 0.0863 4 4.002 MINOR ENSMUSG00000002279 Lmf1 ENSMUST00000156868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002279 Lmf1 ENSMUST00000128146 - NO_TRANSLATION retained_intron ENSMUSG00000002279 Lmf1 ENSMUST00000154842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002279 Lmf1 ENSMUST00000137201 ENSMUSP00000114651 TRANSLATION nonsense_mediated_decay - - 1 64.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000045038 Prkce ENSMUST00000097274 ENSMUSP00000094873 TRANSLATION protein_coding - CCDS29008.1 1 737.0 26.0 8.4 26.0 421.1 0.0 -4,-7 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000045038 Prkce ENSMUST00000136986 - NO_TRANSLATION retained_intron ENSMUSG00000045038 Prkce ENSMUST00000150486 - NO_TRANSLATION retained_intron ENSMUSG00000045038 Prkce ENSMUST00000142003 ENSMUSP00000138615 TRANSLATION nonsense_mediated_decay - - 1 125.0 0.0 1.33 0.0 52.8 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000045038 Prkce ENSMUST00000097275 ENSMUSP00000094874 TRANSLATION protein_coding - CCDS29008.1 1 737.0 26.0 8.4 26.0 421.1 0.0 -4,-7 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000061130 Ppm1b ENSMUST00000080217 ENSMUSP00000079107 TRANSLATION protein_coding - CCDS50199.1 1 477.0 13.0 3.5 11.3 391.3 0.0 -4,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000061130 Ppm1b ENSMUST00000112304 ENSMUSP00000107923 TRANSLATION protein_coding - CCDS37710.1 1 390.0 13.0 3.5 2.5 391.3 0.0 -4,-5 0.341 10 18.438 MINOR ENSMUSG00000061130 Ppm1b ENSMUST00000234332 ENSMUSP00000157013 TRANSLATION protein_coding - CCDS50201.1 - 390.0 13.0 3.5 2.2 391.3 0.0 -4,-5 0.3352 10 18.351 MINOR ENSMUSG00000061130 Ppm1b ENSMUST00000112307 ENSMUSP00000107926 TRANSLATION protein_coding - CCDS50200.1 1 393.0 13.0 3.5 5.3 391.3 0.0 -4,-5 0.5835 10 19.251 MINOR ENSMUSG00000061130 Ppm1b ENSMUST00000234710 - NO_TRANSLATION retained_intron ENSMUSG00000061130 Ppm1b ENSMUST00000112305 ENSMUSP00000107924 TRANSLATION protein_coding - CCDS50201.1 1 390.0 13.0 3.5 2.2 391.3 0.0 -4,-5 0.3352 10 18.351 MINOR ENSMUSG00000061130 Ppm1b ENSMUST00000234851 ENSMUSP00000157058 TRANSLATION protein_coding - - - 402.0 13.0 3.5 1.7 391.3 0.0 -4,-5 0.2556 10 18.204 MINOR ENSMUSG00000061130 Ppm1b ENSMUST00000234540 ENSMUSP00000157282 TRANSLATION protein_coding - CCDS50200.1 - 393.0 13.0 3.5 5.3 391.3 0.0 -4,-5 0.5835 10 19.251 MINOR ENSMUSG00000059562 Ccdc154 ENSMUST00000182292 ENSMUSP00000138191 TRANSLATION protein_coding - - 5 662.0 0.0 0.0 0.4 836.6 0.0 -4,-5 0.1669 - 4.404 MINOR ENSMUSG00000059562 Ccdc154 ENSMUST00000182621 ENSMUSP00000138090 TRANSLATION protein_coding - CCDS50032.2 5 664.0 0.0 0.0 0.4 841.7 0.0 -4,-5 0.3207 - 4.71 MINOR ENSMUSG00000059562 Ccdc154 ENSMUST00000183178 ENSMUSP00000138659 TRANSLATION nonsense_mediated_decay - - 1 82.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000059562 Ccdc154 ENSMUST00000073277 ENSMUSP00000073002 TRANSLATION protein_coding - - 5 657.0 0.0 0.0 0.0 863.2 0.0 -4,-5 0.8229 - 6.0 PRINCIPAL:1 ENSMUSG00000002365 Snx9 ENSMUST00000231803 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002365 Snx9 ENSMUST00000002436 ENSMUSP00000002436 TRANSLATION protein_coding - CCDS57041.1 1 595.0 0.0 12.75 8.4 506.8 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000050933 Vmn1r231 ENSMUST00000238096 ENSMUSP00000157849 TRANSLATION protein_coding - - - 255.0 0.0 0.0 0.0 92.5 6.0 -4,-7 0.7185 - 0.0 PRINCIPAL:2 ENSMUSG00000050933 Vmn1r231 ENSMUST00000235948 ENSMUSP00000157578 TRANSLATION protein_coding - CCDS28430.1 - 311.0 0.0 0.0 0.1 90.7 8.0 -4,-5 0.2187 - 0.0 ALTERNATIVE:2 ENSMUSG00000050933 Vmn1r231 ENSMUST00000061278 ENSMUSP00000056228 TRANSLATION protein_coding - CCDS28430.1 - 311.0 0.0 0.0 0.1 90.7 8.0 -4,-5 0.2187 - 0.0 ALTERNATIVE:2 ENSMUSG00000034345 Gtf2h5 ENSMUST00000146035 - NO_TRANSLATION retained_intron ENSMUSG00000034345 Gtf2h5 ENSMUST00000039487 ENSMUSP00000040355 TRANSLATION protein_coding - CCDS37423.1 1 71.0 0.0 1.5 34.9 93.2 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000034345 Gtf2h5 ENSMUST00000100955 ENSMUSP00000098515 TRANSLATION protein_coding - CCDS37423.1 1 71.0 0.0 1.5 34.9 93.2 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000007050 Lsm2 ENSMUST00000172523 - NO_TRANSLATION retained_intron ENSMUSG00000007050 Lsm2 ENSMUST00000174326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007050 Lsm2 ENSMUST00000172890 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007050 Lsm2 ENSMUST00000007266 ENSMUSP00000007266 TRANSLATION protein_coding - CCDS28671.1 1 131.0 5.0 2.91 0.1 61.4 0.0 -4,-7 0.1362 4 17.0 MINOR ENSMUSG00000007050 Lsm2 ENSMUST00000172666 - NO_TRANSLATION retained_intron ENSMUSG00000007050 Lsm2 ENSMUST00000114011 ENSMUSP00000109644 TRANSLATION protein_coding - CCDS50081.1 1 95.0 5.0 2.91 30.8 61.4 0.0 -4,-6 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000007050 Lsm2 ENSMUST00000172777 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007050 Lsm2 ENSMUST00000174241 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007050 Lsm2 ENSMUST00000174434 - NO_TRANSLATION retained_intron ENSMUSG00000007050 Lsm2 ENSMUST00000174860 - NO_TRANSLATION retained_intron ENSMUSG00000007050 Lsm2 ENSMUST00000173004 ENSMUSP00000134403 TRANSLATION protein_coding - CCDS57069.1 1 85.0 0.0 0.75 0.0 0.0 0.0 -4,-2 0.0199 1 1.548 MINOR ENSMUSG00000019320 Noxo1 ENSMUST00000126342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019320 Noxo1 ENSMUST00000019464 ENSMUSP00000019464 TRANSLATION protein_coding - CCDS50018.1 1 349.0 0.0 4.548 0.4 71.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000019320 Noxo1 ENSMUST00000152527 - NO_TRANSLATION retained_intron ENSMUSG00000019320 Noxo1 ENSMUST00000141095 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019320 Noxo1 ENSMUST00000150313 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019320 Noxo1 ENSMUST00000141522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019320 Noxo1 ENSMUST00000123026 - NO_TRANSLATION retained_intron ENSMUSG00000019320 Noxo1 ENSMUST00000124864 - NO_TRANSLATION retained_intron ENSMUSG00000054469 Lclat1 ENSMUST00000131335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054469 Lclat1 ENSMUST00000134149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054469 Lclat1 ENSMUST00000232703 ENSMUSP00000156922 TRANSLATION protein_coding stop - - 355.0 2.0 5.33 0.0 143.3 6.0 -1,-5 0.0359 8 -2.0 MINOR ENSMUSG00000054469 Lclat1 ENSMUST00000149064 ENSMUSP00000119291 TRANSLATION protein_coding stop - 2 203.0 2.0 4.0 0.0 74.0 3.0 -1,-5 0.0 2 -2.0 MINOR ENSMUSG00000054469 Lclat1 ENSMUST00000067545 ENSMUSP00000068690 TRANSLATION protein_coding - CCDS37689.1 1 376.0 2.0 6.08 20.7 143.3 6.0 -1,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000054469 Lclat1 ENSMUST00000130574 ENSMUSP00000116535 TRANSLATION protein_coding stop - 2 55.0 0.0 1.0 0.0 0.0 3.0 -1,-5 0.0002 - -2.0 MINOR ENSMUSG00000062619 2310039H08Rik ENSMUST00000071430 ENSMUSP00000071378 TRANSLATION protein_coding - CCDS28841.1 - 114.0 0.0 0.8 0.0 0.0 0.0 -4,-6 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000040312 Cchcr1 ENSMUST00000174827 - NO_TRANSLATION retained_intron ENSMUSG00000040312 Cchcr1 ENSMUST00000173903 ENSMUSP00000133407 TRANSLATION protein_coding - - 5 867.0 0.0 0.0 0.0 1507.9 0.0 -4,-7 0.8453 3 6.0 PRINCIPAL:1 ENSMUSG00000040312 Cchcr1 ENSMUST00000172893 - NO_TRANSLATION retained_intron ENSMUSG00000040312 Cchcr1 ENSMUST00000164242 ENSMUSP00000132028 TRANSLATION protein_coding - CCDS50090.1 1 770.0 0.0 0.0 0.0 1466.4 0.0 -4,-2 0.2417 3 3.51 MINOR ENSMUSG00000040312 Cchcr1 ENSMUST00000173582 - NO_TRANSLATION retained_intron ENSMUSG00000040312 Cchcr1 ENSMUST00000045956 ENSMUSP00000046612 TRANSLATION protein_coding - CCDS50090.1 1 770.0 0.0 0.0 0.0 1466.4 0.0 -4,-2 0.2417 3 3.51 MINOR ENSMUSG00000040312 Cchcr1 ENSMUST00000173986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024042 Sik1 ENSMUST00000234142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024042 Sik1 ENSMUST00000024839 ENSMUSP00000024839 TRANSLATION protein_coding - CCDS37552.1 1 779.0 18.0 6.47 1.1 253.8 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000024042 Sik1 ENSMUST00000234331 - NO_TRANSLATION retained_intron ENSMUSG00000024042 Sik1 ENSMUST00000234867 - NO_TRANSLATION retained_intron ENSMUSG00000090700 Cyp4f40 ENSMUST00000234995 - NO_TRANSLATION retained_intron ENSMUSG00000090700 Cyp4f40 ENSMUST00000235086 ENSMUSP00000157311 TRANSLATION protein_coding - CCDS50060.1 - 524.0 30.0 10.75 8.5 430.3 1.0 -3,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000090700 Cyp4f40 ENSMUST00000165061 ENSMUSP00000129536 TRANSLATION protein_coding - CCDS50060.1 1 524.0 30.0 10.75 8.5 430.3 1.0 -3,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000064120 Mocs1 ENSMUST00000165390 ENSMUSP00000132371 TRANSLATION protein_coding - - 1 143.0 10.0 2.33 0.0 49.4 0.0 -4,0 0.0 2 0.0 MINOR ENSMUSG00000064120 Mocs1 ENSMUST00000173362 ENSMUSP00000134265 TRANSLATION nonsense_mediated_decay - - 5 228.0 13.0 3.33 0.0 81.4 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000064120 Mocs1 ENSMUST00000173033 ENSMUSP00000133694 TRANSLATION protein_coding - CCDS50143.1 1 636.0 21.0 9.51 6.9 411.3 0.0 -4,0 1.0 12 20.214 PRINCIPAL:1 ENSMUSG00000064120 Mocs1 ENSMUST00000173430 ENSMUSP00000133761 TRANSLATION protein_coding start - 3 98.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000064120 Mocs1 ENSMUST00000174268 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064120 Mocs1 ENSMUST00000174647 ENSMUSP00000133713 TRANSLATION nonsense_mediated_decay - - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000064120 Mocs1 ENSMUST00000024797 ENSMUSP00000024797 TRANSLATION protein_coding - CCDS57100.1 5 385.0 21.0 8.91 9.0 253.4 0.0 -4,0 0.5674 8 13.8 MINOR ENSMUSG00000079698 Vmn2r93 ENSMUST00000231938 ENSMUSP00000155900 TRANSLATION protein_coding - - - 585.0 2.0 2.06 0.0 192.8 0.0 4,-1 0.0014 - 7.352 MINOR ENSMUSG00000079698 Vmn2r93 ENSMUST00000231879 ENSMUSP00000156230 TRANSLATION protein_coding - - - 525.0 0.0 1.26 0.0 137.8 0.0 4,-1 0.0006 - 3.27 MINOR ENSMUSG00000079698 Vmn2r93 ENSMUST00000079206 ENSMUSP00000078200 TRANSLATION protein_coding - CCDS49972.1 5 857.0 4.0 2.31 0.1 391.4 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000035929 H2-Q4 ENSMUST00000081435 ENSMUSP00000080159 TRANSLATION protein_coding - CCDS50087.1 1 354.0 0.0 4.0 0.0 362.8 0.0 2,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000035929 H2-Q4 ENSMUST00000173975 - NO_TRANSLATION retained_intron ENSMUSG00000092558 Med20 ENSMUST00000149893 - NO_TRANSLATION retained_intron ENSMUSG00000092558 Med20 ENSMUST00000138638 - NO_TRANSLATION retained_intron ENSMUSG00000092558 Med20 ENSMUST00000133855 - NO_TRANSLATION retained_intron ENSMUSG00000092558 Med20 ENSMUST00000024778 ENSMUSP00000024778 TRANSLATION protein_coding - CCDS28851.1 1 212.0 0.0 3.0 24.9 163.3 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000036196 Slc26a8 ENSMUST00000233689 - NO_TRANSLATION retained_intron ENSMUSG00000036196 Slc26a8 ENSMUST00000233903 ENSMUSP00000156642 TRANSLATION nonsense_mediated_decay - - - 67.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000036196 Slc26a8 ENSMUST00000233213 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036196 Slc26a8 ENSMUST00000232805 ENSMUSP00000156677 TRANSLATION protein_coding start - - 252.0 0.0 0.85 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000036196 Slc26a8 ENSMUST00000114764 ENSMUSP00000110412 TRANSLATION protein_coding - CCDS70779.1 5 999.0 0.0 7.366 0.0 287.8 13.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000036196 Slc26a8 ENSMUST00000145224 ENSMUSP00000156853 TRANSLATION protein_coding - - 2 521.0 0.0 4.5 0.0 232.9 13.0 -4,-2 0.0029 - 2.976 MINOR ENSMUSG00000036196 Slc26a8 ENSMUST00000233249 ENSMUSP00000156769 TRANSLATION protein_coding - - - 894.0 0.0 6.966 0.0 233.1 9.0 -4,-2 0.0204 1 7.92 MINOR ENSMUSG00000036196 Slc26a8 ENSMUST00000233398 ENSMUSP00000156774 TRANSLATION protein_coding - - - 430.0 0.0 3.32 0.0 186.7 11.0 -4,-2 0.0029 - 0.0 MINOR ENSMUSG00000055817 Mta3 ENSMUST00000176054 ENSMUSP00000134775 TRANSLATION protein_coding start - 5 251.0 4.0 0.225 0.0 37.5 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000055817 Mta3 ENSMUST00000112350 ENSMUSP00000107969 TRANSLATION protein_coding - CCDS50197.1 1 513.0 7.0 4.907 9.2 212.1 0.0 -4,-5 0.9979 7 17.0 ALTERNATIVE:1 ENSMUSG00000055817 Mta3 ENSMUST00000177069 ENSMUSP00000135064 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.132 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000055817 Mta3 ENSMUST00000177416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055817 Mta3 ENSMUST00000112349 ENSMUSP00000107968 TRANSLATION protein_coding - CCDS50195.1 1 514.0 7.0 4.907 9.2 212.1 0.0 -4,-5 1.0 7 17.0 PRINCIPAL:4 ENSMUSG00000055817 Mta3 ENSMUST00000176816 ENSMUSP00000135752 TRANSLATION protein_coding start - 3 271.0 4.0 3.55 0.0 56.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000055817 Mta3 ENSMUST00000175920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055817 Mta3 ENSMUST00000112352 ENSMUSP00000107971 TRANSLATION protein_coding - CCDS50196.1 1 586.0 7.0 4.532 0.3 212.1 0.0 -4,-5 0.0865 8 13.25 MINOR ENSMUSG00000055817 Mta3 ENSMUST00000067826 ENSMUSP00000068931 TRANSLATION protein_coding - CCDS28997.1 1 591.0 7.0 4.532 0.4 210.6 0.0 -4,-5 0.0817 8 13.25 MINOR ENSMUSG00000023830 Igf2r ENSMUST00000024599 ENSMUSP00000024599 TRANSLATION protein_coding - CCDS37436.1 1 2483.0 5.0 43.35 0.1 1380.1 0.0 2,-2 1.0 46 17.0 PRINCIPAL:1 ENSMUSG00000023830 Igf2r ENSMUST00000161738 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023830 Igf2r ENSMUST00000159127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063011 Msln ENSMUST00000236137 ENSMUSP00000157558 TRANSLATION protein_coding - - - 629.0 0.0 2.207 0.4 1160.6 1.0 1,-3 0.7881 5 8.0 ALTERNATIVE:2 ENSMUSG00000063011 Msln ENSMUST00000237012 - NO_TRANSLATION retained_intron ENSMUSG00000063011 Msln ENSMUST00000238188 ENSMUSP00000157685 TRANSLATION nonsense_mediated_decay start - - 74.0 0.0 0.225 0.0 96.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000063011 Msln ENSMUST00000235374 - NO_TRANSLATION retained_intron ENSMUSG00000063011 Msln ENSMUST00000236053 - NO_TRANSLATION retained_intron ENSMUSG00000063011 Msln ENSMUST00000238120 ENSMUSP00000158357 TRANSLATION protein_coding - CCDS28526.1 - 625.0 0.0 2.207 0.4 1167.5 1.0 2,-3 0.935 5 8.0 PRINCIPAL:4 ENSMUSG00000063011 Msln ENSMUST00000237359 ENSMUSP00000158474 TRANSLATION protein_coding - CCDS28526.1 - 625.0 0.0 2.207 0.4 1167.5 1.0 2,-3 0.935 5 8.0 PRINCIPAL:4 ENSMUSG00000063011 Msln ENSMUST00000235228 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063011 Msln ENSMUST00000075884 ENSMUSP00000075279 TRANSLATION protein_coding - - 1 629.0 0.0 2.207 0.4 1160.6 1.0 1,-3 0.7881 5 8.0 ALTERNATIVE:2 ENSMUSG00000024097 Srsf7 ENSMUST00000234503 ENSMUSP00000157265 TRANSLATION nonsense_mediated_decay - - - 137.0 4.0 2.364 0.1 81.9 0.0 -4,-5 0.0899 8 -2.0 MINOR ENSMUSG00000024097 Srsf7 ENSMUST00000235036 - NO_TRANSLATION retained_intron ENSMUSG00000024097 Srsf7 ENSMUST00000234095 ENSMUSP00000157284 TRANSLATION protein_coding - - - 154.0 4.0 0.6 0.0 19.9 0.0 -4,-7 0.0 2 6.724 MINOR ENSMUSG00000024097 Srsf7 ENSMUST00000063417 ENSMUSP00000070983 TRANSLATION protein_coding - CCDS28988.1 1 238.0 4.0 2.364 11.0 81.9 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:4 ENSMUSG00000024097 Srsf7 ENSMUST00000234889 - NO_TRANSLATION retained_intron ENSMUSG00000024097 Srsf7 ENSMUST00000235069 ENSMUSP00000157383 TRANSLATION protein_coding - - - 235.0 4.0 2.364 11.0 81.9 0.0 -4,-5 0.7957 8 15.0 ALTERNATIVE:1 ENSMUSG00000024097 Srsf7 ENSMUST00000234696 ENSMUSP00000157263 TRANSLATION protein_coding - - - 215.0 4.0 2.364 2.1 81.9 0.0 -4,-5 0.2007 8 12.33 MINOR ENSMUSG00000024097 Srsf7 ENSMUST00000234577 - NO_TRANSLATION retained_intron ENSMUSG00000064043 Trerf1 ENSMUST00000188730 - NO_TRANSLATION retained_intron ENSMUSG00000064043 Trerf1 ENSMUST00000190020 ENSMUSP00000159411 TRANSLATION protein_coding - - 2 1216.0 7.0 4.22 0.0 80.4 0.0 -4,-5 0.2163 7 16.35 MINOR ENSMUSG00000064043 Trerf1 ENSMUST00000188947 - NO_TRANSLATION retained_intron ENSMUSG00000064043 Trerf1 ENSMUST00000191153 - NO_TRANSLATION retained_intron ENSMUSG00000064043 Trerf1 ENSMUST00000190080 ENSMUSP00000159410 TRANSLATION protein_coding - - 1 1225.0 8.0 4.22 0.3 94.6 0.0 -4,-5 0.9948 7 18.0 PRINCIPAL:1 ENSMUSG00000023913 Pla2g7 ENSMUST00000165706 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023913 Pla2g7 ENSMUST00000024706 ENSMUSP00000024706 TRANSLATION protein_coding - CCDS28796.1 1 440.0 8.0 10.41 1.8 584.1 0.0 4,-1 1.0 9 19.0 PRINCIPAL:1 ENSMUSG00000023913 Pla2g7 ENSMUST00000163489 - NO_TRANSLATION retained_intron ENSMUSG00000023913 Pla2g7 ENSMUST00000167214 ENSMUSP00000130404 TRANSLATION protein_coding stop - 5 211.0 4.0 4.75 0.0 239.6 0.0 4,-1 0.0 3 -2.0 MINOR ENSMUSG00000023913 Pla2g7 ENSMUST00000169694 ENSMUSP00000132027 TRANSLATION protein_coding stop - 1 298.0 8.0 7.41 0.0 390.7 0.0 4,-1 0.004 6 -2.0 MINOR ENSMUSG00000023913 Pla2g7 ENSMUST00000167418 ENSMUSP00000131898 TRANSLATION protein_coding stop - 3 122.0 0.0 2.0 0.0 87.1 0.0 4,-1 0.0 2 -2.0 MINOR ENSMUSG00000096727 Psmb9 ENSMUST00000114230 - NO_TRANSLATION retained_intron ENSMUSG00000096727 Psmb9 ENSMUST00000174576 ENSMUSP00000133499 TRANSLATION protein_coding - CCDS28642.1 1 219.0 0.0 5.05 9.2 145.7 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000096727 Psmb9 ENSMUST00000237228 ENSMUSP00000157651 TRANSLATION nonsense_mediated_decay - - - 93.0 0.0 2.05 0.0 69.6 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000096727 Psmb9 ENSMUST00000179593 - NO_TRANSLATION retained_intron ENSMUSG00000096727 Psmb9 ENSMUST00000171321 ENSMUSP00000128195 TRANSLATION protein_coding start - 2 44.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000096727 Psmb9 ENSMUST00000178857 - NO_TRANSLATION retained_intron ENSMUSG00000096727 Psmb9 ENSMUST00000173831 ENSMUSP00000134120 TRANSLATION protein_coding stop - 3 63.0 0.0 1.75 0.0 55.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024027 Glp1r ENSMUST00000114574 ENSMUSP00000110221 TRANSLATION protein_coding - CCDS37542.1 1 463.0 0.0 10.4 3.8 331.7 5.0 3,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000024027 Glp1r ENSMUST00000236038 ENSMUSP00000157572 TRANSLATION nonsense_mediated_decay - CCDS37542.1 - 463.0 0.0 10.4 3.8 331.7 5.0 3,-3 1.0 - -2.0 MINOR ENSMUSG00000054640 Slc8a1 ENSMUST00000086538 ENSMUSP00000083725 TRANSLATION protein_coding - CCDS37706.1 5 970.0 20.0 3.29 7.5 611.2 7.0 2,-1 1.0 14 16.0 PRINCIPAL:3 ENSMUSG00000054640 Slc8a1 ENSMUST00000235015 ENSMUSP00000157030 TRANSLATION protein_coding - - - 940.0 20.0 3.29 0.0 598.2 6.0 2,-1 0.1564 12 14.0 MINOR ENSMUSG00000054640 Slc8a1 ENSMUST00000163123 ENSMUSP00000132809 TRANSLATION protein_coding - CCDS37706.1 1 970.0 20.0 3.29 7.5 611.2 7.0 2,-1 1.0 14 16.0 PRINCIPAL:3 ENSMUSG00000054640 Slc8a1 ENSMUST00000234131 ENSMUSP00000157278 TRANSLATION protein_coding - CCDS50191.1 - 958.0 20.0 3.026 4.6 611.2 7.0 2,-1 0.8015 14 14.58 MINOR ENSMUSG00000054640 Slc8a1 ENSMUST00000163680 ENSMUSP00000126373 TRANSLATION protein_coding - - 5 970.0 20.0 3.026 7.5 611.2 7.0 2,-1 0.8515 13 15.472 ALTERNATIVE:1 ENSMUSG00000054640 Slc8a1 ENSMUST00000249357 ENSMUSP00000159714 TRANSLATION nonsense_mediated_decay - - - 664.0 19.0 1.65 0.0 517.3 4.0 2,-1 0.0144 10 -2.0 MINOR ENSMUSG00000054640 Slc8a1 ENSMUST00000234923 ENSMUSP00000157245 TRANSLATION protein_coding stop - - 599.0 14.0 0.5 0.0 485.4 4.0 2,-1 0.0356 8 -2.0 MINOR ENSMUSG00000071074 Yipf3 ENSMUST00000151488 - NO_TRANSLATION retained_intron ENSMUSG00000071074 Yipf3 ENSMUST00000095263 ENSMUSP00000092897 TRANSLATION protein_coding - CCDS28823.1 1 347.0 0.0 0.0 6.5 0.0 6.0 -4,-5 1.0 6 2.0 PRINCIPAL:1 ENSMUSG00000071074 Yipf3 ENSMUST00000145371 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071074 Yipf3 ENSMUST00000123311 ENSMUSP00000115951 TRANSLATION protein_coding stop - 5 203.0 0.0 0.0 0.0 0.0 6.0 -4,-6 0.0617 2 -2.0 MINOR ENSMUSG00000071074 Yipf3 ENSMUST00000149989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071074 Yipf3 ENSMUST00000127378 ENSMUSP00000114937 TRANSLATION protein_coding start - 5 201.0 0.0 0.0 0.0 38.7 3.0 -4,-2 0.0434 2 -2.0 MINOR ENSMUSG00000058030 Vmn1r237 ENSMUST00000077301 ENSMUSP00000076531 TRANSLATION protein_coding - CCDS28438.1 - 289.0 0.0 0.0 0.1 113.4 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000058030 Vmn1r237 ENSMUST00000237155 ENSMUSP00000158294 TRANSLATION protein_coding - CCDS28438.1 - 289.0 0.0 0.0 0.1 113.4 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000058030 Vmn1r237 ENSMUST00000237711 - NO_TRANSLATION retained_intron ENSMUSG00000032624 Eml4 ENSMUST00000096766 ENSMUSP00000094528 TRANSLATION protein_coding - CCDS50192.1 1 988.0 0.0 15.338 6.8 197.8 0.0 -4,-5 1.0 24 10.0 PRINCIPAL:3 ENSMUSG00000032624 Eml4 ENSMUST00000234460 ENSMUSP00000157143 TRANSLATION protein_coding - - - 941.0 0.0 15.338 0.0 197.8 0.0 -4,-6 0.0855 22 8.0 MINOR ENSMUSG00000032624 Eml4 ENSMUST00000112363 ENSMUSP00000107982 TRANSLATION protein_coding - CCDS50193.1 1 919.0 0.0 15.272 5.7 197.8 0.0 -4,-5 0.8179 21 9.488 ALTERNATIVE:1 ENSMUSG00000032624 Eml4 ENSMUST00000234584 ENSMUSP00000157195 TRANSLATION protein_coding - - - 977.0 0.0 15.272 6.8 197.8 0.0 -4,-5 0.784 23 9.868 ALTERNATIVE:1 ENSMUSG00000032624 Eml4 ENSMUST00000049503 ENSMUSP00000041880 TRANSLATION protein_coding - CCDS37708.1 1 876.0 0.0 15.272 0.4 197.8 0.0 -4,-5 0.3296 21 7.868 MINOR ENSMUSG00000032624 Eml4 ENSMUST00000235121 - NO_TRANSLATION retained_intron ENSMUSG00000033327 Tnxb ENSMUST00000238305 ENSMUSP00000158703 TRANSLATION protein_coding - - - 4114.0 0.0 19.33 0.0 1591.0 0.0 4,-1 0.6039 111 8.0 ALTERNATIVE:2 ENSMUSG00000033327 Tnxb ENSMUST00000168533 ENSMUSP00000127487 TRANSLATION protein_coding - CCDS28656.2 1 3126.0 0.0 17.28 0.0 1218.3 0.0 4,-1 0.2957 101 1.902 MINOR ENSMUSG00000033327 Tnxb ENSMUST00000238967 ENSMUSP00000158977 TRANSLATION protein_coding - - - 4356.0 0.0 19.33 0.0 1590.9 0.0 4,-1 1.0 115 8.0 PRINCIPAL:2 ENSMUSG00000033327 Tnxb ENSMUST00000087399 ENSMUSP00000084661 TRANSLATION protein_coding - - 5 4006.0 0.0 19.13 0.0 1546.2 0.0 4,-1 0.5113 109 7.198 MINOR ENSMUSG00000067212 H2-T23 ENSMUST00000174471 - NO_TRANSLATION retained_intron ENSMUSG00000067212 H2-T23 ENSMUST00000174839 - NO_TRANSLATION retained_intron ENSMUSG00000067212 H2-T23 ENSMUST00000174161 - NO_TRANSLATION retained_intron ENSMUSG00000067212 H2-T23 ENSMUST00000102678 ENSMUSP00000099739 TRANSLATION protein_coding - CCDS28715.1 1 357.0 3.0 4.0 0.1 362.2 0.0 2,-3 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000025735 Rhbdl1 ENSMUST00000183929 ENSMUSP00000139046 TRANSLATION protein_coding - - 5 369.0 0.0 5.03 1.0 98.8 6.0 -4,-5 0.0719 - 9.858 MINOR ENSMUSG00000025735 Rhbdl1 ENSMUST00000184865 ENSMUSP00000138927 TRANSLATION protein_coding stop - 3 128.0 0.0 1.12 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000025735 Rhbdl1 ENSMUST00000026831 ENSMUSP00000026831 TRANSLATION protein_coding - CCDS28534.1 1 373.0 0.0 5.36 27.5 123.5 6.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000024208 Uqcc2 ENSMUST00000118613 ENSMUSP00000113747 TRANSLATION protein_coding - - 3 97.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.0014 1 4.002 MINOR ENSMUSG00000024208 Uqcc2 ENSMUST00000025045 ENSMUSP00000025045 TRANSLATION protein_coding - CCDS28561.1 1 136.0 0.0 3.58 9.0 0.0 0.0 -4,-7 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000024208 Uqcc2 ENSMUST00000145148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024208 Uqcc2 ENSMUST00000119227 ENSMUSP00000113777 TRANSLATION protein_coding - - 3 127.0 0.0 3.25 7.6 0.0 0.0 -4,-7 0.658 1 7.815 MINOR ENSMUSG00000050762 Prss27 ENSMUST00000059482 ENSMUSP00000056483 TRANSLATION protein_coding - CCDS28472.1 1 328.0 5.0 3.08712 0.3 226.4 0.0 4,-1 1.0 3 17.0 PRINCIPAL:1 ENSMUSG00000024222 Fkbp5 ENSMUST00000233372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024222 Fkbp5 ENSMUST00000233307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024222 Fkbp5 ENSMUST00000232939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024222 Fkbp5 ENSMUST00000233917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024222 Fkbp5 ENSMUST00000233102 ENSMUSP00000156418 TRANSLATION protein_coding - CCDS37528.1 - 456.0 0.0 10.3 14.0 203.3 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000024222 Fkbp5 ENSMUST00000233870 ENSMUSP00000156811 TRANSLATION protein_coding - - - 248.0 0.0 5.05 0.0 47.9 0.0 -4,-5 0.0 11 0.0 MINOR ENSMUSG00000024222 Fkbp5 ENSMUST00000147716 - NO_TRANSLATION retained_intron ENSMUSG00000024222 Fkbp5 ENSMUST00000153744 ENSMUSP00000116466 TRANSLATION protein_coding stop - 5 191.0 0.0 4.75 0.0 105.1 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000024222 Fkbp5 ENSMUST00000114792 ENSMUSP00000110440 TRANSLATION protein_coding - CCDS37528.1 2 456.0 0.0 10.3 14.0 203.3 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000024222 Fkbp5 ENSMUST00000233291 ENSMUSP00000156582 TRANSLATION protein_coding - - - 93.0 0.0 2.198 0.0 39.6 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000024222 Fkbp5 ENSMUST00000079413 ENSMUSP00000078382 TRANSLATION protein_coding - CCDS37528.1 1 456.0 0.0 10.3 14.0 203.3 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000024222 Fkbp5 ENSMUST00000233747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024222 Fkbp5 ENSMUST00000143685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024222 Fkbp5 ENSMUST00000232690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067370 B3galt4 ENSMUST00000087543 ENSMUSP00000084823 TRANSLATION protein_coding - CCDS28638.1 - 371.0 0.0 0.25 1.1 216.7 0.0 2,-3 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000045417 Vmn1r230 ENSMUST00000233939 ENSMUSP00000156540 TRANSLATION protein_coding - CCDS28429.1 - 316.0 0.0 0.0 0.1 98.2 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045417 Vmn1r230 ENSMUST00000053974 ENSMUSP00000061330 TRANSLATION protein_coding - CCDS28429.1 - 316.0 0.0 0.0 0.1 98.2 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045417 Vmn1r230 ENSMUST00000233670 ENSMUSP00000156842 TRANSLATION protein_coding - CCDS28429.1 - 316.0 0.0 0.0 0.1 98.2 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045417 Vmn1r230 ENSMUST00000232909 ENSMUSP00000156546 TRANSLATION protein_coding - CCDS28429.1 - 316.0 0.0 0.0 0.1 98.2 5.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000067931 Zfp948 ENSMUST00000088787 ENSMUSP00000086166 TRANSLATION protein_coding - CCDS28441.1 1 667.0 60.0 0.8 0.0 391.2 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000023980 Taf8 ENSMUST00000067103 ENSMUSP00000063201 TRANSLATION protein_coding - CCDS37642.1 1 308.0 0.0 5.75 4.6 183.7 0.0 -4,-6 1.0 5 10.0 PRINCIPAL:4 ENSMUSG00000023980 Taf8 ENSMUST00000233121 ENSMUSP00000156629 TRANSLATION protein_coding - - - 305.0 0.0 5.75 4.6 183.7 0.0 -4,-6 0.771 5 10.0 ALTERNATIVE:1 ENSMUSG00000023980 Taf8 ENSMUST00000233274 - NO_TRANSLATION retained_intron ENSMUSG00000023980 Taf8 ENSMUST00000233675 - NO_TRANSLATION retained_intron ENSMUSG00000023980 Taf8 ENSMUST00000233174 ENSMUSP00000156668 TRANSLATION protein_coding - - - 265.0 0.0 5.75 2.0 183.7 0.0 -4,-6 0.4009 3 8.556 MINOR ENSMUSG00000034729 Mrps10 ENSMUST00000125963 ENSMUSP00000116184 TRANSLATION protein_coding stop - 3 172.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0002 2 -2.0 MINOR ENSMUSG00000034729 Mrps10 ENSMUST00000154039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034729 Mrps10 ENSMUST00000152497 - NO_TRANSLATION retained_intron ENSMUSG00000034729 Mrps10 ENSMUST00000141699 - NO_TRANSLATION retained_intron ENSMUSG00000034729 Mrps10 ENSMUST00000119945 ENSMUSP00000113343 TRANSLATION protein_coding - CCDS50129.1 1 201.0 0.0 4.25 12.1 85.7 0.0 -4,-1 1.0 4 11.0 PRINCIPAL:4 ENSMUSG00000034729 Mrps10 ENSMUST00000136061 - NO_TRANSLATION retained_intron ENSMUSG00000034729 Mrps10 ENSMUST00000135418 - NO_TRANSLATION retained_intron ENSMUSG00000034729 Mrps10 ENSMUST00000060752 ENSMUSP00000055301 TRANSLATION protein_coding - CCDS28846.1 5 160.0 0.0 4.25 1.7 85.7 0.0 -4,-5 0.3287 4 8.189 MINOR ENSMUSG00000034729 Mrps10 ENSMUST00000143725 - NO_TRANSLATION retained_intron ENSMUSG00000034729 Mrps10 ENSMUST00000120737 ENSMUSP00000113460 TRANSLATION protein_coding - CCDS50130.1 1 200.0 0.0 4.25 12.1 85.7 0.0 -4,0 0.9773 4 11.0 ALTERNATIVE:1 ENSMUSG00000034729 Mrps10 ENSMUST00000119841 ENSMUSP00000112740 TRANSLATION protein_coding - CCDS28846.1 1 160.0 0.0 4.25 1.7 85.7 0.0 -4,-5 0.3287 4 8.189 MINOR ENSMUSG00000024135 Srbd1 ENSMUST00000095187 ENSMUSP00000092810 TRANSLATION protein_coding - CCDS50204.1 5 981.0 0.0 7.692 0.4 276.8 0.0 -4,-5 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000024135 Srbd1 ENSMUST00000234645 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024135 Srbd1 ENSMUST00000234951 ENSMUSP00000157062 TRANSLATION protein_coding - - - 170.0 0.0 1.08 0.0 42.7 0.0 -4,-6 0.0 5 0.0 MINOR ENSMUSG00000024135 Srbd1 ENSMUST00000234595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024135 Srbd1 ENSMUST00000234682 ENSMUSP00000157179 TRANSLATION protein_coding - - - 195.0 0.0 1.48 0.0 42.7 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000024135 Srbd1 ENSMUST00000234761 ENSMUSP00000157302 TRANSLATION protein_coding - - - 280.0 0.0 1.48 0.0 110.5 0.0 -4,-6 0.0 7 0.0 MINOR ENSMUSG00000052270 Fpr2 ENSMUST00000064068 ENSMUSP00000065799 TRANSLATION protein_coding - CCDS28419.1 1 351.0 0.0 3.3 6.7 124.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000052270 Fpr2 ENSMUST00000149944 ENSMUSP00000153922 TRANSLATION protein_coding - - 1 48.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - 1.002 MINOR ENSMUSG00000067049 Unc93a ENSMUST00000084966 ENSMUSP00000082032 TRANSLATION protein_coding - CCDS28402.1 1 458.0 0.0 2.312 7.3 47.6 10.0 -1,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000067049 Unc93a ENSMUST00000233405 ENSMUSP00000156756 TRANSLATION protein_coding - CCDS28402.1 - 458.0 0.0 2.312 7.3 47.6 10.0 -1,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000067049 Unc93a ENSMUST00000232960 ENSMUSP00000156970 TRANSLATION protein_coding - CCDS28402.1 - 458.0 0.0 2.312 7.3 47.6 10.0 -1,-4 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000023979 Guca1b ENSMUST00000145462 ENSMUSP00000126799 TRANSLATION protein_coding - - 2 230.0 16.0 2.8 0.0 61.2 0.0 -4,-5 0.0023 - 14.256 MINOR ENSMUSG00000023979 Guca1b ENSMUST00000024774 ENSMUSP00000024774 TRANSLATION protein_coding - CCDS28847.1 1 201.0 17.0 3.8 32.3 74.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000048905 Bnip5 ENSMUST00000228025 ENSMUSP00000154383 TRANSLATION protein_coding start/stop - - 133.0 0.0 0.0 0.0 152.6 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000048905 Bnip5 ENSMUST00000062357 ENSMUSP00000050646 TRANSLATION protein_coding - CCDS28586.1 1 669.0 0.0 0.0 0.0 949.3 0.0 -4,-6 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000054128 H2-T3 ENSMUST00000173133 ENSMUSP00000134469 TRANSLATION nonsense_mediated_decay - CCDS28718.1 5 384.0 3.0 4.78 0.0 332.3 1.0 1,-3 1.0 - -2.0 MINOR ENSMUSG00000054128 H2-T3 ENSMUST00000097329 ENSMUSP00000138177 TRANSLATION protein_coding stop - 1 68.0 0.0 0.3 0.0 0.0 0.0 1,-2 0.0024 1 -2.0 MINOR ENSMUSG00000054128 H2-T3 ENSMUST00000095300 ENSMUSP00000138582 TRANSLATION nonsense_mediated_decay - - 1 43.0 0.0 0.4 0.0 0.0 0.0 1,-2 0.0024 - -2.0 MINOR ENSMUSG00000054128 H2-T3 ENSMUST00000174101 ENSMUSP00000138563 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.4 0.0 0.0 0.0 1,-2 0.0039 - -2.0 MINOR ENSMUSG00000054128 H2-T3 ENSMUST00000102675 ENSMUSP00000099736 TRANSLATION protein_coding - CCDS28718.1 1 384.0 3.0 4.78 0.0 332.3 1.0 1,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000054128 H2-T3 ENSMUST00000173435 - NO_TRANSLATION retained_intron ENSMUSG00000054128 H2-T3 ENSMUST00000173577 - NO_TRANSLATION retained_intron ENSMUSG00000054128 H2-T3 ENSMUST00000172663 ENSMUSP00000134547 TRANSLATION nonsense_mediated_decay - - 1 220.0 3.0 3.4 0.0 279.8 0.0 1,-2 0.0024 5 -2.0 MINOR ENSMUSG00000054128 H2-T3 ENSMUST00000025312 ENSMUSP00000025312 TRANSLATION protein_coding - - 1 340.0 3.0 3.78 0.0 182.1 1.0 1,-3 0.0089 5 7.002 MINOR ENSMUSG00000054128 H2-T3 ENSMUST00000173629 ENSMUSP00000134607 TRANSLATION nonsense_mediated_decay - - 1 119.0 1.0 1.3 0.0 134.6 0.0 1,-2 0.0013 1 -2.0 MINOR ENSMUSG00000092292 Or14j2 ENSMUST00000216181 ENSMUSP00000149739 TRANSLATION protein_coding - CCDS57081.1 5 312.0 0.0 1.0 1.1 156.2 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000036185 Sapcd1 ENSMUST00000174117 ENSMUSP00000134423 TRANSLATION nonsense_mediated_decay - - 1 96.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036185 Sapcd1 ENSMUST00000173211 - NO_TRANSLATION retained_intron ENSMUSG00000036185 Sapcd1 ENSMUST00000040151 ENSMUSP00000047448 TRANSLATION protein_coding - CCDS37594.1 1 146.0 0.0 2.48 2.4 87.1 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000036185 Sapcd1 ENSMUST00000174037 ENSMUSP00000133881 TRANSLATION nonsense_mediated_decay - - 2 96.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024176 Sox8 ENSMUST00000173447 ENSMUSP00000133403 TRANSLATION protein_coding - - 1 221.0 0.0 1.6 0.0 178.8 0.0 -4,-5 0.0412 - 12.0 MINOR ENSMUSG00000024176 Sox8 ENSMUST00000174560 ENSMUSP00000133742 TRANSLATION protein_coding - - 3 221.0 0.0 1.6 0.0 178.8 0.0 -4,-5 0.0412 - 12.0 MINOR ENSMUSG00000024176 Sox8 ENSMUST00000249783 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024176 Sox8 ENSMUST00000249782 - NO_TRANSLATION retained_intron ENSMUSG00000024176 Sox8 ENSMUST00000249784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024176 Sox8 ENSMUST00000025003 ENSMUSP00000025003 TRANSLATION protein_coding - CCDS28521.1 1 464.0 0.0 1.6 5.1 178.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000035473 Galm ENSMUST00000039205 ENSMUSP00000040580 TRANSLATION protein_coding - CCDS28987.1 1 342.0 12.0 7.0 27.1 331.3 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000035473 Galm ENSMUST00000133955 ENSMUSP00000120018 TRANSLATION protein_coding start - 5 184.0 7.0 3.29 0.0 132.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044469 Tnfaip8l1 ENSMUST00000233649 - NO_TRANSLATION retained_intron ENSMUSG00000044469 Tnfaip8l1 ENSMUST00000077788 ENSMUSP00000076961 TRANSLATION protein_coding - CCDS28897.1 1 186.0 0.0 1.0 34.0 242.6 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095286 Or2g25 ENSMUST00000215414 ENSMUSP00000150204 TRANSLATION protein_coding - CCDS28759.1 5 317.0 0.0 1.0 4.8 150.1 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095286 Or2g25 ENSMUST00000073636 ENSMUSP00000073320 TRANSLATION protein_coding - CCDS28759.1 - 317.0 0.0 1.0 4.8 150.1 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095286 Or2g25 ENSMUST00000213638 ENSMUSP00000149006 TRANSLATION protein_coding - CCDS28759.1 5 317.0 0.0 1.0 4.8 150.1 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024107 Lhcgr ENSMUST00000234368 ENSMUSP00000157318 TRANSLATION nonsense_mediated_decay - - - 251.0 0.0 5.05 0.0 0.0 0.0 2,-3 0.0028 - -2.0 MINOR ENSMUSG00000024107 Lhcgr ENSMUST00000024916 ENSMUSP00000024916 TRANSLATION protein_coding - CCDS29025.1 1 700.0 0.0 6.155 0.1 99.7 0.0 2,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000024107 Lhcgr ENSMUST00000234881 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024107 Lhcgr ENSMUST00000234269 - NO_TRANSLATION retained_intron ENSMUSG00000041130 Zfp598 ENSMUST00000047179 ENSMUSP00000038367 TRANSLATION protein_coding - - 1 905.0 26.0 -0.05 0.0 0.0 0.0 -4,-6 0.7204 16 6.0 PRINCIPAL:4 ENSMUSG00000041130 Zfp598 ENSMUST00000234956 ENSMUSP00000157172 TRANSLATION protein_coding - CCDS28490.1 - 908.0 26.0 -0.05 0.0 0.0 0.0 -4,-6 0.611 16 6.0 ALTERNATIVE:2 ENSMUSG00000041130 Zfp598 ENSMUST00000234988 - NO_TRANSLATION retained_intron ENSMUSG00000023931 Efhb ENSMUST00000024725 ENSMUSP00000024725 TRANSLATION protein_coding - CCDS37652.1 1 853.0 8.0 0.92 0.4 34.9 0.0 -4,-1 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000023931 Efhb ENSMUST00000233544 ENSMUSP00000156438 TRANSLATION nonsense_mediated_decay - - - 290.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0028 - -2.0 MINOR ENSMUSG00000039316 Rftn1 ENSMUST00000113195 ENSMUSP00000108820 TRANSLATION protein_coding - - 1 276.0 0.0 0.0 0.0 366.6 0.0 -4,-7 0.0002 3 0.0 MINOR ENSMUSG00000039316 Rftn1 ENSMUST00000156094 - NO_TRANSLATION retained_intron ENSMUSG00000039316 Rftn1 ENSMUST00000044503 ENSMUSP00000046524 TRANSLATION protein_coding - CCDS28873.1 1 554.0 0.0 0.0 0.1 713.9 0.0 -4,-5 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000024008 Cpne5 ENSMUST00000126755 - NO_TRANSLATION retained_intron ENSMUSG00000024008 Cpne5 ENSMUST00000024805 ENSMUSP00000024805 TRANSLATION protein_coding - CCDS28592.1 1 593.0 10.0 14.8425 7.6 412.6 0.0 -4,-5 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000024008 Cpne5 ENSMUST00000124917 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024008 Cpne5 ENSMUST00000126993 - NO_TRANSLATION retained_intron ENSMUSG00000024008 Cpne5 ENSMUST00000137727 ENSMUSP00000117982 TRANSLATION protein_coding stop - 5 307.0 10.0 7.4225 0.0 108.4 0.0 -4,-5 0.001 13 -2.0 MINOR ENSMUSG00000024008 Cpne5 ENSMUST00000234157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024008 Cpne5 ENSMUST00000234042 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000098374 Gm28043 ENSMUST00000130871 ENSMUSP00000117838 TRANSLATION nonsense_mediated_decay,RT - - 2 719.0 8.0 8.7 0.0 131.7 0.0 -4,-6 0.768 - -2.0 PRINCIPAL:1 ENSMUSG00000038500 Prr3 ENSMUST00000165613 ENSMUSP00000125802 TRANSLATION protein_coding - CCDS50099.1 1 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0284 1 0.0 MINOR ENSMUSG00000038500 Prr3 ENSMUST00000173872 ENSMUSP00000134021 TRANSLATION protein_coding stop - 5 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038500 Prr3 ENSMUST00000173417 - NO_TRANSLATION retained_intron ENSMUSG00000038500 Prr3 ENSMUST00000172429 ENSMUSP00000129651 TRANSLATION protein_coding - CCDS70807.1 1 143.0 4.0 1.0 1.1 23.9 0.0 -4,-6 0.3435 1 16.052 MINOR ENSMUSG00000038500 Prr3 ENSMUST00000172900 ENSMUSP00000134115 TRANSLATION protein_coding - CCDS50099.1 2 88.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0284 1 0.0 MINOR ENSMUSG00000038500 Prr3 ENSMUST00000055454 ENSMUSP00000052166 TRANSLATION protein_coding - CCDS28714.1 1 190.0 4.0 1.0 4.8 23.9 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000038500 Prr3 ENSMUST00000174849 ENSMUSP00000134505 TRANSLATION protein_coding - - 2 101.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000038500 Prr3 ENSMUST00000173585 ENSMUSP00000134373 TRANSLATION protein_coding - CCDS70807.1 2 143.0 4.0 1.0 1.1 23.9 0.0 -4,-6 0.3435 1 16.052 MINOR ENSMUSG00000038500 Prr3 ENSMUST00000173724 ENSMUSP00000133895 TRANSLATION protein_coding stop - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024165 Jpt2 ENSMUST00000233481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024165 Jpt2 ENSMUST00000232978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024165 Jpt2 ENSMUST00000024981 ENSMUSP00000024981 TRANSLATION protein_coding - CCDS28504.1 1 190.0 0.0 0.0 15.5 0.0 0.0 -4,-6 1.0 4 4.0 PRINCIPAL:1 ENSMUSG00000024165 Jpt2 ENSMUST00000233067 ENSMUSP00000156651 TRANSLATION nonsense_mediated_decay - CCDS28504.1 - 190.0 0.0 0.0 15.5 0.0 0.0 -4,-6 1.0 4 -2.0 MINOR ENSMUSG00000024165 Jpt2 ENSMUST00000233316 - NO_TRANSLATION retained_intron ENSMUSG00000024169 Ift140 ENSMUST00000156945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024169 Ift140 ENSMUST00000142000 ENSMUSP00000156399 TRANSLATION protein_coding - - 1 1421.0 0.0 0.88 0.0 0.0 0.0 -4,-6 0.2418 18 6.0 ALTERNATIVE:2 ENSMUSG00000024169 Ift140 ENSMUST00000153895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024169 Ift140 ENSMUST00000232788 - NO_TRANSLATION retained_intron ENSMUSG00000024169 Ift140 ENSMUST00000140692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024169 Ift140 ENSMUST00000137386 ENSMUSP00000116163 TRANSLATION protein_coding stop - 5 1232.0 0.0 0.88 0.0 0.0 0.0 -4,-6 0.204 16 -2.0 MINOR ENSMUSG00000024169 Ift140 ENSMUST00000024983 ENSMUSP00000024983 TRANSLATION protein_coding - CCDS28505.1 1 1464.0 0.0 0.88 2.2 0.0 0.0 -4,-6 1.0 20 7.0 PRINCIPAL:2 ENSMUSG00000024169 Ift140 ENSMUST00000151776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024169 Ift140 ENSMUST00000139300 - NO_TRANSLATION retained_intron ENSMUSG00000090115 Usp49 ENSMUST00000131550 ENSMUSP00000118100 TRANSLATION nonsense_mediated_decay start - 5 52.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000090115 Usp49 ENSMUST00000145314 ENSMUSP00000118675 TRANSLATION protein_coding stop - 2 37.0 4.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000090115 Usp49 ENSMUST00000152724 ENSMUSP00000120034 TRANSLATION protein_coding start - 1 453.0 4.0 1.848 0.0 121.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000090115 Usp49 ENSMUST00000024779 ENSMUSP00000024779 TRANSLATION protein_coding - CCDS28852.1 1 685.0 14.0 3.488 5.1 262.1 0.0 -4,-6 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000059481 Plg ENSMUST00000014578 ENSMUSP00000014578 TRANSLATION protein_coding - CCDS28390.1 1 812.0 6.0 16.75 5.5 771.4 0.0 3,-1 1.0 37 20.0 PRINCIPAL:1 ENSMUSG00000059481 Plg ENSMUST00000232767 - NO_TRANSLATION retained_intron ENSMUSG00000023965 Fbxl17 ENSMUST00000112839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023965 Fbxl17 ENSMUST00000112840 ENSMUSP00000108459 TRANSLATION protein_coding - - 1 220.0 0.0 5.5 0.0 15.1 0.0 -4,-5 0.0 3 1.986 MINOR ENSMUSG00000023965 Fbxl17 ENSMUST00000090318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023965 Fbxl17 ENSMUST00000024761 ENSMUSP00000024761 TRANSLATION protein_coding - CCDS50162.1 1 701.0 0.0 8.25 0.0 60.8 0.0 -4,-7 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000023965 Fbxl17 ENSMUST00000169134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094724 Rnaset2b ENSMUST00000179728 ENSMUSP00000137303 TRANSLATION protein_coding - CCDS37429.1 1 259.0 6.0 4.5 1.1 204.8 1.0 1,-3 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000094724 Rnaset2b ENSMUST00000232245 ENSMUSP00000156218 TRANSLATION protein_coding stop - - 163.0 4.0 2.95 0.0 142.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000094724 Rnaset2b ENSMUST00000231963 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094724 Rnaset2b ENSMUST00000232304 ENSMUSP00000156329 TRANSLATION protein_coding - - - 163.0 4.0 2.85 0.0 136.6 0.0 -4,-7 0.0 4 8.61 MINOR ENSMUSG00000094724 Rnaset2b ENSMUST00000089119 ENSMUSP00000086519 TRANSLATION protein_coding - CCDS37429.1 1 259.0 6.0 4.5 1.1 204.8 1.0 1,-3 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000094724 Rnaset2b ENSMUST00000232106 - NO_TRANSLATION retained_intron ENSMUSG00000094724 Rnaset2b ENSMUST00000232029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073435 Nme3 ENSMUST00000145688 - NO_TRANSLATION retained_intron ENSMUSG00000073435 Nme3 ENSMUST00000150500 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073435 Nme3 ENSMUST00000024978 ENSMUSP00000024978 TRANSLATION protein_coding - CCDS28503.1 1 169.0 11.0 4.1 22.6 186.6 0.0 1,-2 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000073435 Nme3 ENSMUST00000125532 - NO_TRANSLATION retained_intron ENSMUSG00000073435 Nme3 ENSMUST00000154321 - NO_TRANSLATION retained_intron ENSMUSG00000073471 Rsph3a ENSMUST00000231900 ENSMUSP00000156196 TRANSLATION protein_coding start - - 133.0 0.0 2.5 0.0 171.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073471 Rsph3a ENSMUST00000232223 ENSMUSP00000156325 TRANSLATION protein_coding - - - 515.0 0.0 6.3 0.0 422.7 0.0 -4,-1 0.4548 - 8.0 ALTERNATIVE:2 ENSMUSG00000073471 Rsph3a ENSMUST00000232233 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073471 Rsph3a ENSMUST00000231845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073471 Rsph3a ENSMUST00000232627 - NO_TRANSLATION retained_intron ENSMUSG00000073471 Rsph3a ENSMUST00000231320 - NO_TRANSLATION retained_intron ENSMUSG00000073471 Rsph3a ENSMUST00000097423 ENSMUSP00000095034 TRANSLATION protein_coding - CCDS49943.1 1 516.0 0.0 6.3 0.0 423.5 0.0 -4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000095886 Esp38 ENSMUST00000178880 ENSMUSP00000136698 TRANSLATION protein_coding - CCDS57091.1 5 80.0 0.0 0.0 0.0 82.5 0.0 2,-3 0.3166 - 0.0 ALTERNATIVE:2 ENSMUSG00000095886 Esp38 ENSMUST00000232743 ENSMUSP00000156650 TRANSLATION protein_coding - - - 91.0 0.0 0.0 0.0 82.5 0.0 -3,-5 0.694 - 0.0 PRINCIPAL:2 ENSMUSG00000093884 Or10h1 ENSMUST00000112165 ENSMUSP00000129451 TRANSLATION protein_coding - CCDS50065.1 - 315.0 0.0 1.6 10.7 178.4 8.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093884 Or10h1 ENSMUST00000214406 ENSMUSP00000150882 TRANSLATION protein_coding - CCDS50065.1 5 315.0 0.0 1.6 10.7 178.4 8.0 -2,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000093884 Or10h1 ENSMUST00000213731 ENSMUSP00000154277 TRANSLATION protein_coding - - 5 319.0 0.0 1.03 0.0 178.4 8.0 -4,-5 0.1058 - 9.864 MINOR ENSMUSG00000049760 Micos13 ENSMUST00000233299 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049760 Micos13 ENSMUST00000052832 ENSMUSP00000052908 TRANSLATION protein_coding - CCDS28908.1 1 119.0 0.0 2.73 12.5 88.5 0.0 -1,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000049760 Micos13 ENSMUST00000233103 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049760 Micos13 ENSMUST00000233235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049760 Micos13 ENSMUST00000233386 - NO_TRANSLATION retained_intron ENSMUSG00000060245 Vmn1r228 ENSMUST00000072410 ENSMUSP00000072243 TRANSLATION protein_coding - CCDS28427.1 - 333.0 0.0 0.0 0.0 87.7 5.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060245 Vmn1r228 ENSMUST00000233186 ENSMUSP00000156690 TRANSLATION protein_coding - CCDS28427.1 - 333.0 0.0 0.0 0.0 87.7 5.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060245 Vmn1r228 ENSMUST00000233164 ENSMUSP00000156930 TRANSLATION protein_coding - CCDS28427.1 - 333.0 0.0 0.0 0.0 87.7 5.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060245 Vmn1r228 ENSMUST00000232812 ENSMUSP00000156530 TRANSLATION protein_coding - CCDS28427.1 - 333.0 0.0 0.0 0.0 87.7 5.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000060245 Vmn1r228 ENSMUST00000233605 ENSMUSP00000156620 TRANSLATION protein_coding - CCDS28427.1 - 333.0 0.0 0.0 0.0 87.7 5.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000042625 Safb2 ENSMUST00000134741 - NO_TRANSLATION retained_intron ENSMUSG00000042625 Safb2 ENSMUST00000124111 ENSMUSP00000120845 TRANSLATION protein_coding start - 1 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000042625 Safb2 ENSMUST00000134497 - NO_TRANSLATION retained_intron ENSMUSG00000042625 Safb2 ENSMUST00000146070 - NO_TRANSLATION retained_intron ENSMUSG00000042625 Safb2 ENSMUST00000155983 ENSMUSP00000116363 TRANSLATION nonsense_mediated_decay - - 5 214.0 0.0 0.0 0.0 43.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000042625 Safb2 ENSMUST00000142752 ENSMUSP00000119141 TRANSLATION protein_coding start - 5 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042625 Safb2 ENSMUST00000127947 - NO_TRANSLATION retained_intron ENSMUSG00000042625 Safb2 ENSMUST00000156640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042625 Safb2 ENSMUST00000146958 - NO_TRANSLATION retained_intron ENSMUSG00000042625 Safb2 ENSMUST00000075510 ENSMUSP00000074953 TRANSLATION protein_coding - CCDS28907.2 1 991.0 0.0 2.588 0.1 91.9 0.0 -4,-5 1.0 24 12.0 PRINCIPAL:1 ENSMUSG00000042625 Safb2 ENSMUST00000144255 ENSMUSP00000123673 TRANSLATION nonsense_mediated_decay - - 1 179.0 0.0 0.0 0.0 43.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000042625 Safb2 ENSMUST00000154991 ENSMUSP00000117696 TRANSLATION protein_coding start - 1 249.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000042625 Safb2 ENSMUST00000142940 ENSMUSP00000123229 TRANSLATION protein_coding start - 1 248.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000042625 Safb2 ENSMUST00000124457 - NO_TRANSLATION retained_intron ENSMUSG00000042625 Safb2 ENSMUST00000133604 ENSMUSP00000119324 TRANSLATION nonsense_mediated_decay - - 1 179.0 0.0 0.0 0.0 43.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042625 Safb2 ENSMUST00000131056 ENSMUSP00000120750 TRANSLATION protein_coding start/stop - 5 295.0 0.0 0.9 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000042625 Safb2 ENSMUST00000140037 - NO_TRANSLATION retained_intron ENSMUSG00000024312 Wdr46 ENSMUST00000025170 ENSMUSP00000025170 TRANSLATION protein_coding - CCDS28637.1 1 622.0 0.0 10.1 0.0 111.9 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000024312 Wdr46 ENSMUST00000234334 ENSMUSP00000157147 TRANSLATION protein_coding start - - 329.0 0.0 6.5396 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000024312 Wdr46 ENSMUST00000172546 - NO_TRANSLATION retained_intron ENSMUSG00000024312 Wdr46 ENSMUST00000173857 - NO_TRANSLATION retained_intron ENSMUSG00000073399 Trim40 ENSMUST00000172640 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073399 Trim40 ENSMUST00000087158 ENSMUSP00000084400 TRANSLATION protein_coding - CCDS28727.1 1 246.0 12.0 1.99 1.2 39.7 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000073399 Trim40 ENSMUST00000172711 ENSMUSP00000133581 TRANSLATION protein_coding - CCDS57080.1 1 212.0 12.0 1.74 0.1 39.7 0.0 -4,-5 0.0792 1 17.244 MINOR ENSMUSG00000073399 Trim40 ENSMUST00000174107 - NO_TRANSLATION retained_intron ENSMUSG00000024184 Pdia2 ENSMUST00000148134 ENSMUSP00000116340 TRANSLATION protein_coding start - 5 154.0 4.0 3.33 0.0 91.8 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000024184 Pdia2 ENSMUST00000039113 ENSMUSP00000035584 TRANSLATION protein_coding - CCDS37510.1 1 527.0 8.0 11.21 0.4 297.5 0.0 2,-2 1.0 25 14.0 PRINCIPAL:2 ENSMUSG00000024184 Pdia2 ENSMUST00000120333 ENSMUSP00000114080 TRANSLATION protein_coding - - 1 524.0 8.0 11.21 0.4 294.0 0.0 2,-2 0.314 24 13.714 ALTERNATIVE:2 ENSMUSG00000024184 Pdia2 ENSMUST00000142410 ENSMUSP00000115267 TRANSLATION protein_coding start/stop - 5 224.0 4.0 4.3 0.0 87.7 0.0 -3,-6 0.0 10 -2.0 MINOR ENSMUSG00000023988 Bysl ENSMUST00000024783 ENSMUSP00000024783 TRANSLATION protein_coding - CCDS50132.1 1 436.0 0.0 4.5 11.3 469.9 0.0 -4,-2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000062638 Btnl1 ENSMUST00000236230 - NO_TRANSLATION retained_intron ENSMUSG00000062638 Btnl1 ENSMUST00000080254 ENSMUSP00000079140 TRANSLATION protein_coding - CCDS50075.1 5 509.0 0.0 3.542 0.1 88.1 0.0 4,-1 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000023938 Aars2 ENSMUST00000024733 ENSMUSP00000024733 TRANSLATION protein_coding - CCDS28809.1 1 980.0 21.0 15.148 1.4 614.6 0.0 -4,-1 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000023938 Aars2 ENSMUST00000232693 - NO_TRANSLATION retained_intron ENSMUSG00000023938 Aars2 ENSMUST00000233391 - NO_TRANSLATION retained_intron ENSMUSG00000023938 Aars2 ENSMUST00000233523 - NO_TRANSLATION retained_intron ENSMUSG00000024101 Washc1 ENSMUST00000233311 - NO_TRANSLATION retained_intron ENSMUSG00000024101 Washc1 ENSMUST00000233354 ENSMUSP00000156933 TRANSLATION protein_coding stop - - 49.0 0.0 0.0 0.0 51.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000024101 Washc1 ENSMUST00000233604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024101 Washc1 ENSMUST00000233589 - NO_TRANSLATION retained_intron ENSMUSG00000024101 Washc1 ENSMUST00000072383 ENSMUSP00000072220 TRANSLATION protein_coding - CCDS28944.1 1 475.0 0.0 0.0 9.3 420.5 0.0 -4,-7 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000024101 Washc1 ENSMUST00000116556 ENSMUSP00000112255 TRANSLATION protein_coding - CCDS28944.1 1 475.0 0.0 0.0 9.3 420.5 0.0 -4,-7 1.0 8 9.0 PRINCIPAL:1 ENSMUSG00000024101 Washc1 ENSMUST00000233060 - NO_TRANSLATION retained_intron ENSMUSG00000024101 Washc1 ENSMUST00000233500 - NO_TRANSLATION retained_intron ENSMUSG00000023852 Chd1 ENSMUST00000174461 ENSMUSP00000134718 TRANSLATION protein_coding start - 2 516.0 0.0 6.63 0.0 185.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023852 Chd1 ENSMUST00000173159 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023852 Chd1 ENSMUST00000173040 ENSMUSP00000133406 TRANSLATION nonsense_mediated_decay start - 5 164.0 0.0 1.9 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000023852 Chd1 ENSMUST00000024627 ENSMUSP00000024627 TRANSLATION protein_coding - CCDS28416.1 1 1711.0 7.0 17.93 8.3 509.1 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000023852 Chd1 ENSMUST00000173311 ENSMUSP00000134091 TRANSLATION protein_coding - - 1 1081.0 7.0 12.73 1.0 414.5 0.0 -4,-5 0.042 7 6.324 MINOR ENSMUSG00000003208 Yju2 ENSMUST00000233661 ENSMUSP00000156755 TRANSLATION protein_coding - - - 256.0 4.0 4.83 0.1 351.8 0.0 -4,-5 0.038 5 14.8 MINOR ENSMUSG00000003208 Yju2 ENSMUST00000233226 - NO_TRANSLATION retained_intron ENSMUSG00000003208 Yju2 ENSMUST00000086869 ENSMUSP00000084082 TRANSLATION protein_coding - CCDS37660.1 1 314.0 4.0 4.83 3.8 371.8 0.0 -4,-5 1.0 8 17.0 PRINCIPAL:1 ENSMUSG00000003208 Yju2 ENSMUST00000233204 - NO_TRANSLATION retained_intron ENSMUSG00000073424 Cyp4f15 ENSMUST00000168171 ENSMUSP00000129264 TRANSLATION protein_coding - CCDS28620.1 1 534.0 30.0 10.75 0.0 439.7 0.0 0,-3 0.8013 6 14.0 PRINCIPAL:2 ENSMUSG00000073424 Cyp4f15 ENSMUST00000167789 - NO_TRANSLATION retained_intron ENSMUSG00000073424 Cyp4f15 ENSMUST00000163907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073424 Cyp4f15 ENSMUST00000008801 ENSMUSP00000008801 TRANSLATION protein_coding - CCDS84293.1 1 527.0 30.0 10.75 0.0 451.5 0.0 0,-3 0.5284 6 14.0 ALTERNATIVE:2 ENSMUSG00000061544 Zfp229 ENSMUST00000065871 ENSMUSP00000065379 TRANSLATION protein_coding - CCDS49995.1 3 705.0 68.0 2.6 0.0 390.1 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000061544 Zfp229 ENSMUST00000183192 ENSMUSP00000138265 TRANSLATION protein_coding - - 1 88.0 0.0 1.6 1.0 88.8 0.0 -4,-6 0.0092 - 3.69 MINOR ENSMUSG00000061544 Zfp229 ENSMUST00000182923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061544 Zfp229 ENSMUST00000182603 ENSMUSP00000138107 TRANSLATION protein_coding - CCDS49995.1 1 705.0 68.0 2.6 0.0 390.1 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000061544 Zfp229 ENSMUST00000182334 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061544 Zfp229 ENSMUST00000182827 ENSMUSP00000138478 TRANSLATION protein_coding stop - 5 90.0 0.0 1.6 0.0 88.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024186 Rgs11 ENSMUST00000152299 - NO_TRANSLATION retained_intron ENSMUSG00000024186 Rgs11 ENSMUST00000122058 ENSMUSP00000113885 TRANSLATION protein_coding - - 2 464.0 0.0 10.175 2.2 194.5 0.0 -4,-2 0.6981 - 8.632 ALTERNATIVE:2 ENSMUSG00000024186 Rgs11 ENSMUST00000126464 - NO_TRANSLATION retained_intron ENSMUSG00000024186 Rgs11 ENSMUST00000146683 - NO_TRANSLATION retained_intron ENSMUSG00000024186 Rgs11 ENSMUST00000127594 - NO_TRANSLATION retained_intron ENSMUSG00000024186 Rgs11 ENSMUST00000155072 - NO_TRANSLATION retained_intron ENSMUSG00000024186 Rgs11 ENSMUST00000147220 - NO_TRANSLATION retained_intron ENSMUSG00000024186 Rgs11 ENSMUST00000123670 - NO_TRANSLATION retained_intron ENSMUSG00000024186 Rgs11 ENSMUST00000139639 - NO_TRANSLATION retained_intron ENSMUSG00000024186 Rgs11 ENSMUST00000025020 ENSMUSP00000025020 TRANSLATION protein_coding - CCDS37511.1 2 466.0 0.0 10.175 2.9 194.5 0.0 -4,-1 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000024186 Rgs11 ENSMUST00000152676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000092413 Or14j4 ENSMUST00000223366 ENSMUSP00000152714 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 1.5 153.2 7.0 -4,-6 0.7828 - 13.0 PRINCIPAL:1 ENSMUSG00000092413 Or14j4 ENSMUST00000221552 ENSMUSP00000152172 TRANSLATION protein_coding - - 5 310.0 0.0 1.0 1.5 153.2 7.0 -4,-6 0.7828 - 13.0 PRINCIPAL:1 ENSMUSG00000024076 Vit ENSMUST00000232859 ENSMUSP00000156543 TRANSLATION protein_coding - - - 628.0 9.0 6.6 0.0 361.6 0.0 -4,-6 0.0599 8 14.0 ALTERNATIVE:2 ENSMUSG00000024076 Vit ENSMUST00000233470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024076 Vit ENSMUST00000232864 - NO_TRANSLATION retained_intron ENSMUSG00000024076 Vit ENSMUST00000024880 ENSMUSP00000024880 TRANSLATION protein_coding - CCDS37696.1 1 650.0 9.0 6.6 3.0 361.6 0.0 1,-2 1.0 8 15.0 PRINCIPAL:2 ENSMUSG00000037095 Lrg1 ENSMUST00000041357 ENSMUSP00000038048 TRANSLATION protein_coding - CCDS28895.1 1 342.0 0.0 1.0 1.4 111.2 0.0 0,-3 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000024036 Slc37a1 ENSMUST00000237928 ENSMUSP00000158451 TRANSLATION protein_coding start - - 359.0 0.0 1.0325 0.0 89.2 13.0 -4,-7 0.0067 - -2.0 MINOR ENSMUSG00000024036 Slc37a1 ENSMUST00000235230 - NO_TRANSLATION retained_intron ENSMUSG00000024036 Slc37a1 ENSMUST00000236251 ENSMUSP00000157617 TRANSLATION protein_coding stop - - 430.0 0.0 2.5645 0.0 106.9 18.0 -4,-7 0.0417 - -2.0 MINOR ENSMUSG00000024036 Slc37a1 ENSMUST00000237425 - NO_TRANSLATION retained_intron ENSMUSG00000024036 Slc37a1 ENSMUST00000236710 ENSMUSP00000157526 TRANSLATION nonsense_mediated_decay - - - 51.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000024036 Slc37a1 ENSMUST00000235220 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024036 Slc37a1 ENSMUST00000237460 ENSMUSP00000158034 TRANSLATION protein_coding stop - - 108.0 0.0 0.0 0.0 0.0 3.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000024036 Slc37a1 ENSMUST00000237835 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024036 Slc37a1 ENSMUST00000237389 ENSMUSP00000158467 TRANSLATION protein_coding stop - - 87.0 0.0 0.0 0.0 0.0 3.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000024036 Slc37a1 ENSMUST00000237932 ENSMUSP00000157478 TRANSLATION protein_coding stop - - 83.0 0.0 0.0 0.0 0.0 3.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000024036 Slc37a1 ENSMUST00000236147 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024036 Slc37a1 ENSMUST00000235564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024036 Slc37a1 ENSMUST00000171233 ENSMUSP00000126111 TRANSLATION protein_coding - CCDS37548.1 1 531.0 0.0 1.6305 9.1 108.8 20.0 -4,-7 1.0 1 12.816 PRINCIPAL:1 ENSMUSG00000024036 Slc37a1 ENSMUST00000237980 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024036 Slc37a1 ENSMUST00000235261 - NO_TRANSLATION retained_intron ENSMUSG00000024036 Slc37a1 ENSMUST00000165149 ENSMUSP00000128223 TRANSLATION protein_coding - CCDS37548.1 1 531.0 0.0 1.6305 9.1 108.8 20.0 -4,-7 1.0 1 12.816 PRINCIPAL:1 ENSMUSG00000024036 Slc37a1 ENSMUST00000236467 - NO_TRANSLATION retained_intron ENSMUSG00000024036 Slc37a1 ENSMUST00000235972 ENSMUSP00000157739 TRANSLATION protein_coding stop - - 18.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024215 Spdef ENSMUST00000114870 ENSMUSP00000110520 TRANSLATION protein_coding - - 5 309.0 0.0 3.33 0.0 195.7 0.0 -4,-7 0.0466 - 8.0 ALTERNATIVE:2 ENSMUSG00000024215 Spdef ENSMUST00000138970 ENSMUSP00000117743 TRANSLATION protein_coding stop - 5 126.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000024215 Spdef ENSMUST00000233880 - NO_TRANSLATION retained_intron ENSMUSG00000024215 Spdef ENSMUST00000025054 ENSMUSP00000025054 TRANSLATION protein_coding - CCDS28568.1 1 325.0 0.0 3.33 0.4 195.7 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000024215 Spdef ENSMUST00000127622 - NO_TRANSLATION retained_intron ENSMUSG00000062101 Zfp119b ENSMUST00000189452 ENSMUSP00000139791 TRANSLATION protein_coding - CCDS79564.1 1 511.0 40.0 1.0 0.0 84.3 0.0 -4,-5 0.1874 - 13.338 MINOR ENSMUSG00000062101 Zfp119b ENSMUST00000056147 ENSMUSP00000058300 TRANSLATION protein_coding - CCDS37659.1 1 543.0 40.0 1.0 0.0 162.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000023959 Clic5 ENSMUST00000233193 - NO_TRANSLATION retained_intron ENSMUSG00000023959 Clic5 ENSMUST00000024755 ENSMUSP00000024755 TRANSLATION protein_coding - CCDS28804.1 1 251.0 15.0 5.6 35.4 59.2 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000023959 Clic5 ENSMUST00000239215 ENSMUSP00000159274 TRANSLATION protein_coding - - - 485.0 15.0 5.0 0.0 59.2 0.0 -4,-5 0.0139 14 16.8 MINOR ENSMUSG00000044477 Zfand3 ENSMUST00000234091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044477 Zfand3 ENSMUST00000234866 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044477 Zfand3 ENSMUST00000234671 ENSMUSP00000157053 TRANSLATION nonsense_mediated_decay start - - 121.0 4.0 0.0 0.0 26.1 0.0 -4,-6 0.0004 1 -2.0 MINOR ENSMUSG00000044477 Zfand3 ENSMUST00000057897 ENSMUSP00000063158 TRANSLATION protein_coding - CCDS28598.1 1 205.0 12.0 1.8 6.0 59.5 0.0 -4,-5 0.7677 2 19.305 MINOR ENSMUSG00000044477 Zfand3 ENSMUST00000226208 ENSMUSP00000154782 TRANSLATION protein_coding - - - 227.0 12.0 1.8 12.5 59.5 0.0 -4,-6 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000044477 Zfand3 ENSMUST00000234902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044477 Zfand3 ENSMUST00000234790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044477 Zfand3 ENSMUST00000226308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044477 Zfand3 ENSMUST00000226421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044477 Zfand3 ENSMUST00000234238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024319 Vps52 ENSMUST00000234673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024319 Vps52 ENSMUST00000025178 ENSMUSP00000025178 TRANSLATION protein_coding - CCDS37574.1 1 723.0 0.0 0.0 4.1 763.4 0.0 -3,-6 1.0 14 8.0 PRINCIPAL:1 ENSMUSG00000024319 Vps52 ENSMUST00000234201 ENSMUSP00000157115 TRANSLATION nonsense_mediated_decay - - - 76.0 7.0 0.0 0.0 0.0 0.0 -3,-6 0.0009 - -2.0 MINOR ENSMUSG00000024319 Vps52 ENSMUST00000172558 - NO_TRANSLATION retained_intron ENSMUSG00000024319 Vps52 ENSMUST00000173445 - NO_TRANSLATION retained_intron ENSMUSG00000024319 Vps52 ENSMUST00000173318 - NO_TRANSLATION retained_intron ENSMUSG00000024319 Vps52 ENSMUST00000173196 ENSMUSP00000133926 TRANSLATION protein_coding stop - 5 612.0 0.0 0.0 0.0 608.3 0.0 -3,-6 0.0073 11 -2.0 MINOR ENSMUSG00000024032 Tff1 ENSMUST00000024831 ENSMUSP00000024831 TRANSLATION protein_coding - CCDS37546.1 1 87.0 0.0 1.48 4.4 54.7 0.0 2,-3 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000024032 Tff1 ENSMUST00000235870 ENSMUSP00000157776 TRANSLATION protein_coding start - - 30.0 0.0 0.15 0.0 0.0 0.0 1,-3 0.0 - -2.0 MINOR ENSMUSG00000091670 Vmn2r105 ENSMUST00000167382 ENSMUSP00000129762 TRANSLATION protein_coding - CCDS49982.1 5 860.0 4.0 3.645 0.1 401.1 11.0 -2,-5 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000091670 Vmn2r105 ENSMUST00000232768 ENSMUSP00000156604 TRANSLATION protein_coding - - - 564.0 4.0 2.875 0.0 257.8 11.0 -1,-5 0.01 - 10.458 MINOR ENSMUSG00000091670 Vmn2r105 ENSMUST00000233786 ENSMUSP00000156857 TRANSLATION protein_coding - - - 564.0 2.0 3.095 0.0 196.4 0.0 -1,-5 0.0004 - 7.302 MINOR ENSMUSG00000091670 Vmn2r105 ENSMUST00000232877 ENSMUSP00000156813 TRANSLATION protein_coding - - - 828.0 4.0 3.195 0.0 395.9 11.0 -1,-5 0.0913 - 11.1 MINOR ENSMUSG00000091670 Vmn2r105 ENSMUST00000233468 ENSMUSP00000156685 TRANSLATION protein_coding - - - 594.0 4.0 3.175 0.0 257.8 11.0 -1,-5 0.0092 - 11.058 MINOR ENSMUSG00000091670 Vmn2r105 ENSMUST00000233461 ENSMUSP00000156971 TRANSLATION protein_coding - - - 858.0 4.0 3.495 0.1 401.1 11.0 -1,-5 0.3871 - 11.7 ALTERNATIVE:2 ENSMUSG00000091670 Vmn2r105 ENSMUST00000233950 ENSMUSP00000156902 TRANSLATION protein_coding - - - 826.0 4.0 3.195 0.0 395.9 11.0 -1,-5 0.0909 - 11.1 MINOR ENSMUSG00000091670 Vmn2r105 ENSMUST00000232803 ENSMUSP00000156599 TRANSLATION protein_coding - - - 551.0 2.0 3.095 0.0 195.2 0.0 -1,-5 0.0004 - 6.902 MINOR ENSMUSG00000056910 Vmn2r107 ENSMUST00000042090 ENSMUSP00000048706 TRANSLATION protein_coding - CCDS49984.1 5 861.0 4.0 2.245 0.0 388.8 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000056910 Vmn2r107 ENSMUST00000233421 ENSMUSP00000156595 TRANSLATION nonsense_mediated_decay - - - 76.0 0.0 0.16 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000056910 Vmn2r107 ENSMUST00000233836 ENSMUSP00000156773 TRANSLATION nonsense_mediated_decay - - - 196.0 0.0 0.84 0.0 30.2 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000023882 Zfp54 ENSMUST00000167749 ENSMUSP00000127089 TRANSLATION protein_coding stop - 2 233.0 6.0 1.864 0.0 102.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023882 Zfp54 ENSMUST00000165230 ENSMUSP00000132983 TRANSLATION protein_coding - CCDS37462.1 1 585.0 54.0 2.764 0.1 335.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000023882 Zfp54 ENSMUST00000007884 ENSMUSP00000007884 TRANSLATION protein_coding - CCDS37462.1 1 585.0 54.0 2.764 0.1 335.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000031233 Pgk2 ENSMUST00000033585 ENSMUSP00000033585 TRANSLATION protein_coding - CCDS28782.1 - 417.0 30.0 1.0 36.9 502.0 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000062859 Tcp11 ENSMUST00000233878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062859 Tcp11 ENSMUST00000233150 - NO_TRANSLATION retained_intron ENSMUSG00000062859 Tcp11 ENSMUST00000233898 ENSMUSP00000156512 TRANSLATION protein_coding - - - 454.0 0.0 4.35 0.0 359.9 0.0 -4,-5 0.0634 3 6.0 ALTERNATIVE:2 ENSMUSG00000062859 Tcp11 ENSMUST00000233009 ENSMUSP00000156820 TRANSLATION nonsense_mediated_decay start - - 36.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000062859 Tcp11 ENSMUST00000233615 ENSMUSP00000156943 TRANSLATION nonsense_mediated_decay start - - 37.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000062859 Tcp11 ENSMUST00000129046 ENSMUSP00000116959 TRANSLATION protein_coding - CCDS37526.1 5 567.0 0.0 4.35 0.1 359.9 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:2 ENSMUSG00000062859 Tcp11 ENSMUST00000042692 ENSMUSP00000038590 TRANSLATION protein_coding - CCDS37526.1 1 567.0 0.0 4.35 0.1 359.9 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:2 ENSMUSG00000062859 Tcp11 ENSMUST00000233665 ENSMUSP00000156460 TRANSLATION nonsense_mediated_decay start - - 57.0 0.0 1.132 0.0 62.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000062859 Tcp11 ENSMUST00000233587 - NO_TRANSLATION retained_intron ENSMUSG00000062859 Tcp11 ENSMUST00000114836 ENSMUSP00000110485 TRANSLATION protein_coding - CCDS50045.1 1 488.0 0.0 4.35 0.1 359.9 0.0 -4,-5 0.3073 3 6.0 ALTERNATIVE:2 ENSMUSG00000062859 Tcp11 ENSMUST00000232798 ENSMUSP00000156874 TRANSLATION protein_coding - - - 447.0 0.0 4.35 0.0 359.9 0.0 -4,-5 0.0634 3 6.0 ALTERNATIVE:2 ENSMUSG00000062859 Tcp11 ENSMUST00000123628 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062859 Tcp11 ENSMUST00000233961 - NO_TRANSLATION retained_intron ENSMUSG00000062859 Tcp11 ENSMUST00000043925 ENSMUSP00000046002 TRANSLATION protein_coding - CCDS50045.1 5 488.0 0.0 4.35 0.1 359.9 0.0 -4,-5 0.3073 3 6.0 ALTERNATIVE:2 ENSMUSG00000062859 Tcp11 ENSMUST00000232728 ENSMUSP00000156714 TRANSLATION nonsense_mediated_decay - - - 43.0 0.0 0.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000067928 Zfp760 ENSMUST00000073312 ENSMUSP00000073038 TRANSLATION protein_coding - CCDS37465.1 1 666.0 67.0 0.8 0.0 292.2 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000096549 Prickle4 ENSMUST00000113300 ENSMUSP00000108925 TRANSLATION protein_coding - CCDS70823.1 5 369.0 15.0 3.5 0.3 114.2 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000096549 Prickle4 ENSMUST00000151540 - NO_TRANSLATION retained_intron ENSMUSG00000096549 Prickle4 ENSMUST00000152214 ENSMUSP00000121465 TRANSLATION protein_coding start - 2 137.0 8.0 2.5 0.0 76.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000096549 Prickle4 ENSMUST00000142014 - NO_TRANSLATION retained_intron ENSMUSG00000096549 Prickle4 ENSMUST00000113299 ENSMUSP00000108924 TRANSLATION protein_coding start - 5 329.0 15.0 3.5 0.0 114.2 0.0 -4,-5 0.0421 - -2.0 MINOR ENSMUSG00000043445 Pgp ENSMUST00000234216 - NO_TRANSLATION retained_intron ENSMUSG00000043445 Pgp ENSMUST00000053024 ENSMUSP00000052866 TRANSLATION protein_coding - CCDS28482.1 1 321.0 7.0 2.0 7.9 154.3 0.0 -4,-5 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000024256 Adcyap1 ENSMUST00000234204 - NO_TRANSLATION retained_intron ENSMUSG00000024256 Adcyap1 ENSMUST00000234081 ENSMUSP00000157279 TRANSLATION protein_coding - CCDS29029.1 - 175.0 0.0 1.0 27.7 85.5 0.0 0,-4 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000024256 Adcyap1 ENSMUST00000234646 ENSMUSP00000157252 TRANSLATION protein_coding stop - - 27.0 0.0 0.0 0.0 0.0 0.0 -2,-6 0.0 - -2.0 MINOR ENSMUSG00000024256 Adcyap1 ENSMUST00000234663 ENSMUSP00000157325 TRANSLATION protein_coding stop - - 79.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0019 1 -2.0 MINOR ENSMUSG00000024256 Adcyap1 ENSMUST00000064775 ENSMUSP00000067057 TRANSLATION protein_coding - CCDS29029.1 1 175.0 0.0 1.0 27.7 85.5 0.0 0,-4 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000024012 Mtch1 ENSMUST00000153658 ENSMUSP00000115027 TRANSLATION protein_coding start - 3 294.0 0.0 3.52775 0.0 34.3 3.0 -1,-4 0.0774 9 -2.0 MINOR ENSMUSG00000024012 Mtch1 ENSMUST00000234129 ENSMUSP00000157035 TRANSLATION protein_coding start - - 311.0 0.0 3.58775 0.0 34.3 3.0 -1,-4 0.0864 9 -2.0 MINOR ENSMUSG00000024012 Mtch1 ENSMUST00000235097 - NO_TRANSLATION retained_intron ENSMUSG00000024012 Mtch1 ENSMUST00000151739 - NO_TRANSLATION retained_intron ENSMUSG00000024012 Mtch1 ENSMUST00000234507 ENSMUSP00000157010 TRANSLATION protein_coding - - - 277.0 0.0 3.28775 0.0 34.3 2.0 -4,-7 0.0538 8 5.4 MINOR ENSMUSG00000024012 Mtch1 ENSMUST00000235118 - NO_TRANSLATION retained_intron ENSMUSG00000024012 Mtch1 ENSMUST00000141319 - NO_TRANSLATION retained_intron ENSMUSG00000024012 Mtch1 ENSMUST00000234180 ENSMUSP00000157364 TRANSLATION nonsense_mediated_decay start - - 112.0 0.0 0.3 0.0 0.0 1.0 -4,-5 0.0016 1 -2.0 MINOR ENSMUSG00000024012 Mtch1 ENSMUST00000095427 ENSMUSP00000093077 TRANSLATION protein_coding - CCDS28596.1 1 389.0 0.0 3.58775 7.0 32.6 3.0 -4,-5 1.0 10 7.904 PRINCIPAL:4 ENSMUSG00000024012 Mtch1 ENSMUST00000118366 ENSMUSP00000113021 TRANSLATION protein_coding - CCDS84288.1 1 372.0 0.0 3.52775 7.3 32.6 3.0 -4,-5 0.9307 10 7.88 ALTERNATIVE:1 ENSMUSG00000024012 Mtch1 ENSMUST00000234416 ENSMUSP00000157224 TRANSLATION nonsense_mediated_decay start - - 63.0 0.0 0.36 0.0 0.0 1.0 -1,-5 0.0 1 -2.0 MINOR ENSMUSG00000024012 Mtch1 ENSMUST00000234856 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024012 Mtch1 ENSMUST00000235088 ENSMUSP00000157094 TRANSLATION protein_coding - - - 260.0 0.0 3.22775 0.0 34.3 2.0 -4,-7 0.0662 8 5.28 MINOR ENSMUSG00000024012 Mtch1 ENSMUST00000234970 ENSMUSP00000157288 TRANSLATION protein_coding start - - 199.0 0.0 2.52875 0.0 34.3 2.0 -4,-5 0.0116 5 -2.0 MINOR ENSMUSG00000024012 Mtch1 ENSMUST00000235021 ENSMUSP00000157218 TRANSLATION protein_coding start - - 299.0 0.0 3.58775 0.0 34.3 2.0 -4,-6 0.0387 9 -2.0 MINOR ENSMUSG00000024012 Mtch1 ENSMUST00000127423 - NO_TRANSLATION retained_intron ENSMUSG00000024012 Mtch1 ENSMUST00000132753 - NO_TRANSLATION retained_intron ENSMUSG00000024012 Mtch1 ENSMUST00000234868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024012 Mtch1 ENSMUST00000234948 - NO_TRANSLATION retained_intron ENSMUSG00000024426 Atat1 ENSMUST00000151009 - NO_TRANSLATION retained_intron ENSMUSG00000024426 Atat1 ENSMUST00000130309 - NO_TRANSLATION retained_intron ENSMUSG00000024426 Atat1 ENSMUST00000137069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024426 Atat1 ENSMUST00000140990 - NO_TRANSLATION retained_intron ENSMUSG00000024426 Atat1 ENSMUST00000077494 ENSMUSP00000076703 TRANSLATION protein_coding - CCDS84305.1 1 398.0 22.0 6.08 3.0 254.6 0.0 -4,-5 0.3769 6 14.582 MINOR ENSMUSG00000024426 Atat1 ENSMUST00000137182 ENSMUSP00000122626 TRANSLATION nonsense_mediated_decay start - 3 35.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024426 Atat1 ENSMUST00000127959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024426 Atat1 ENSMUST00000149277 ENSMUSP00000122715 TRANSLATION protein_coding - - 1 353.0 22.0 6.08 0.1 254.6 0.0 -4,-5 0.1122 7 14.0 MINOR ENSMUSG00000024426 Atat1 ENSMUST00000174436 - NO_TRANSLATION retained_intron ENSMUSG00000024426 Atat1 ENSMUST00000143114 - NO_TRANSLATION retained_intron ENSMUSG00000024426 Atat1 ENSMUST00000141662 ENSMUSP00000115004 TRANSLATION protein_coding - CCDS50097.1 1 333.0 22.0 6.08 11.3 254.6 0.0 -4,-5 1.0 7 17.0 PRINCIPAL:4 ENSMUSG00000024426 Atat1 ENSMUST00000056034 ENSMUSP00000053853 TRANSLATION protein_coding - CCDS28711.1 1 310.0 22.0 6.08 9.8 254.6 0.0 -4,-5 0.9343 6 16.562 ALTERNATIVE:1 ENSMUSG00000024426 Atat1 ENSMUST00000061052 ENSMUSP00000056383 TRANSLATION protein_coding - CCDS50096.1 1 421.0 22.0 6.08 8.9 254.6 0.0 -4,-5 0.856 7 16.301 ALTERNATIVE:1 ENSMUSG00000024426 Atat1 ENSMUST00000141132 ENSMUSP00000117824 TRANSLATION protein_coding stop - 5 180.0 22.0 4.75 0.0 236.7 0.0 -4,-6 0.0019 1 -2.0 MINOR ENSMUSG00000024426 Atat1 ENSMUST00000126744 ENSMUSP00000122211 TRANSLATION nonsense_mediated_decay start - 3 131.0 22.0 2.5 0.0 132.9 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000024426 Atat1 ENSMUST00000140292 ENSMUSP00000119039 TRANSLATION protein_coding start - 3 128.0 0.0 0.5 0.0 0.0 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000023915 Tnfrsf21 ENSMUST00000233482 - NO_TRANSLATION retained_intron ENSMUSG00000023915 Tnfrsf21 ENSMUST00000024708 ENSMUSP00000024708 TRANSLATION protein_coding - CCDS28794.1 1 655.0 0.0 2.2 6.2 90.2 0.0 1,2 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000057789 Bak1 ENSMUST00000078691 ENSMUSP00000077757 TRANSLATION protein_coding - CCDS28558.1 1 209.0 0.0 5.15 10.3 91.2 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000057789 Bak1 ENSMUST00000237411 ENSMUSP00000158395 TRANSLATION nonsense_mediated_decay - - - 79.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000057789 Bak1 ENSMUST00000025034 ENSMUSP00000025034 TRANSLATION nonsense_mediated_decay - - 1 151.0 0.0 2.77 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057789 Bak1 ENSMUST00000143158 ENSMUSP00000122521 TRANSLATION protein_coding - - 3 146.0 0.0 2.65 0.0 0.0 0.0 -4,-5 0.0 1 1.002 MINOR ENSMUSG00000002835 Chaf1a ENSMUST00000233325 - NO_TRANSLATION retained_intron ENSMUSG00000002835 Chaf1a ENSMUST00000232828 ENSMUSP00000156798 TRANSLATION protein_coding start - - 226.0 0.0 0.6 0.0 166.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000002835 Chaf1a ENSMUST00000002914 ENSMUSP00000002914 TRANSLATION protein_coding - CCDS28892.1 1 911.0 0.0 0.732 0.0 861.2 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000023826 Prkn ENSMUST00000097413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023826 Prkn ENSMUST00000233706 ENSMUSP00000156810 TRANSLATION protein_coding - - - 274.0 28.0 7.41 0.4 68.5 0.0 -4,-5 0.0042 5 5.136 MINOR ENSMUSG00000023826 Prkn ENSMUST00000233782 ENSMUSP00000156534 TRANSLATION nonsense_mediated_decay - - - 59.0 0.0 1.0 0.0 59.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023826 Prkn ENSMUST00000066658 - NO_TRANSLATION retained_intron ENSMUSG00000023826 Prkn ENSMUST00000179624 ENSMUSP00000136268 TRANSLATION protein_coding start/stop - 5 71.0 4.0 1.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023826 Prkn ENSMUST00000186167 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023826 Prkn ENSMUST00000233411 ENSMUSP00000156556 TRANSLATION nonsense_mediated_decay - - - 63.0 0.0 1.0 0.0 57.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023826 Prkn ENSMUST00000233294 ENSMUSP00000156589 TRANSLATION nonsense_mediated_decay - - - 214.0 6.0 3.48 0.0 72.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000023826 Prkn ENSMUST00000233436 ENSMUSP00000156432 TRANSLATION nonsense_mediated_decay - - - 65.0 0.0 1.0 0.0 59.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023826 Prkn ENSMUST00000190849 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023826 Prkn ENSMUST00000186406 ENSMUSP00000140217 TRANSLATION protein_coding start - 3 104.0 8.0 2.68 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000023826 Prkn ENSMUST00000191124 ENSMUSP00000140587 TRANSLATION protein_coding - CCDS79506.1 1 464.0 32.0 10.39 9.6 139.2 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000023826 Prkn ENSMUST00000233634 ENSMUSP00000156481 TRANSLATION nonsense_mediated_decay - - - 106.0 0.0 1.15 0.0 58.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023826 Prkn ENSMUST00000190894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023826 Prkn ENSMUST00000218435 ENSMUSP00000151830 TRANSLATION protein_coding start/stop - 5 288.0 14.0 5.81 0.7 72.5 0.0 -4,-5 0.011 4 -2.0 MINOR ENSMUSG00000052146 Rps10 ENSMUST00000145226 - NO_TRANSLATION retained_intron ENSMUSG00000052146 Rps10 ENSMUST00000152982 ENSMUSP00000156208 TRANSLATION protein_coding stop - 5 107.0 0.0 2.0 0.0 170.1 0.0 -4,-7 0.0175 2 -2.0 MINOR ENSMUSG00000052146 Rps10 ENSMUST00000114881 ENSMUSP00000110531 TRANSLATION protein_coding - CCDS37522.1 3 165.0 0.0 2.0 15.4 170.1 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000052146 Rps10 ENSMUST00000025052 ENSMUSP00000025052 TRANSLATION protein_coding - - 1 154.0 0.0 2.0 0.0 170.1 0.0 -4,-7 0.0187 2 12.0 MINOR ENSMUSG00000052146 Rps10 ENSMUST00000114882 ENSMUSP00000110532 TRANSLATION protein_coding - CCDS37522.1 1 165.0 0.0 2.0 15.4 170.1 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000052146 Rps10 ENSMUST00000178774 ENSMUSP00000136042 TRANSLATION protein_coding - CCDS37522.1 2 165.0 0.0 2.0 15.4 170.1 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000052146 Rps10 ENSMUST00000150763 - NO_TRANSLATION retained_intron ENSMUSG00000052146 Rps10 ENSMUST00000155071 ENSMUSP00000156346 TRANSLATION protein_coding - - 2 169.0 0.0 2.0 0.0 170.1 0.0 -4,-7 0.0621 2 12.0 MINOR ENSMUSG00000051341 Zfp52 ENSMUST00000233281 ENSMUSP00000156662 TRANSLATION protein_coding - CCDS37464.1 - 724.0 74.0 0.8 0.4 295.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000051341 Zfp52 ENSMUST00000079242 ENSMUSP00000078233 TRANSLATION protein_coding - CCDS37464.1 3 724.0 74.0 0.8 0.4 295.9 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000045027 Prss22 ENSMUST00000041649 ENSMUSP00000039808 TRANSLATION protein_coding - CCDS37482.1 1 307.0 6.0 3.0 1.2 218.9 0.0 2,-2 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000048231 H2-M10.4 ENSMUST00000169950 ENSMUSP00000130832 TRANSLATION protein_coding - CCDS28723.1 1 331.0 0.0 4.0495 0.0 205.2 1.0 0,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048231 H2-M10.4 ENSMUST00000057502 ENSMUSP00000058686 TRANSLATION protein_coding - CCDS28723.1 1 331.0 0.0 4.0495 0.0 205.2 1.0 0,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000052712 BC004004 ENSMUST00000234012 ENSMUSP00000157314 TRANSLATION nonsense_mediated_decay - - - 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0081 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000234326 ENSMUSP00000157211 TRANSLATION protein_coding - - - 331.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0438 2 0.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000150874 - NO_TRANSLATION retained_intron ENSMUSG00000052712 BC004004 ENSMUST00000234234 ENSMUSP00000157251 TRANSLATION protein_coding stop - - 137.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.023 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000149405 ENSMUSP00000117309 TRANSLATION protein_coding - CCDS28594.1 5 348.0 0.0 0.0 8.6 0.0 2.0 -4,-5 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000052712 BC004004 ENSMUST00000234714 ENSMUSP00000157343 TRANSLATION protein_coding stop - - 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0081 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000234256 ENSMUSP00000157363 TRANSLATION protein_coding - CCDS28594.1 - 348.0 0.0 0.0 8.6 0.0 2.0 -4,-5 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000052712 BC004004 ENSMUST00000235114 ENSMUSP00000157339 TRANSLATION nonsense_mediated_decay - - - 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0081 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000120346 ENSMUSP00000113315 TRANSLATION protein_coding - - 5 288.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0395 2 0.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000235023 ENSMUSP00000157274 TRANSLATION protein_coding - CCDS28594.1 - 348.0 0.0 0.0 8.6 0.0 2.0 -4,-5 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000052712 BC004004 ENSMUST00000234711 ENSMUSP00000157208 TRANSLATION protein_coding - CCDS28594.1 - 348.0 0.0 0.0 8.6 0.0 2.0 -4,-5 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000052712 BC004004 ENSMUST00000235040 ENSMUSP00000157227 TRANSLATION protein_coding stop - - 184.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0096 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000234845 ENSMUSP00000157073 TRANSLATION protein_coding stop - - 165.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0243 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000235038 ENSMUSP00000157134 TRANSLATION protein_coding stop - - 220.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0333 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000234054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052712 BC004004 ENSMUST00000234028 ENSMUSP00000157326 TRANSLATION nonsense_mediated_decay - - - 232.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0353 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000234459 ENSMUSP00000157083 TRANSLATION protein_coding stop - - 110.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0227 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000156215 - NO_TRANSLATION retained_intron ENSMUSG00000052712 BC004004 ENSMUST00000234820 ENSMUSP00000157262 TRANSLATION nonsense_mediated_decay - - - 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0081 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000235117 ENSMUSP00000157150 TRANSLATION protein_coding - - - 288.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0395 2 0.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000234631 ENSMUSP00000157108 TRANSLATION nonsense_mediated_decay - - - 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0081 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000235074 ENSMUSP00000157090 TRANSLATION protein_coding stop - - 96.0 0.0 0.0 0.0 0.0 2.0 -4,-6 0.026 - -2.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000235050 ENSMUSP00000157372 TRANSLATION protein_coding - - - 72.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0114 - 0.0 MINOR ENSMUSG00000052712 BC004004 ENSMUST00000234773 ENSMUSP00000157182 TRANSLATION protein_coding - CCDS28594.1 - 348.0 0.0 0.0 8.6 0.0 2.0 -4,-5 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000052712 BC004004 ENSMUST00000064709 ENSMUSP00000066224 TRANSLATION protein_coding - CCDS28594.1 1 348.0 0.0 0.0 8.6 0.0 2.0 -4,-5 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000052712 BC004004 ENSMUST00000234377 ENSMUSP00000157214 TRANSLATION protein_coding - - - 387.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0446 2 0.0 MINOR ENSMUSG00000091636 Akain1 ENSMUST00000233983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091636 Akain1 ENSMUST00000169935 ENSMUSP00000131134 TRANSLATION protein_coding - CCDS50171.1 1 69.0 0.0 0.8 16.4 0.0 0.0 -4,-5 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000039770 Ypel5 ENSMUST00000233210 ENSMUSP00000156501 TRANSLATION protein_coding - CCDS28963.1 - 121.0 4.0 2.5 33.9 53.2 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000039770 Ypel5 ENSMUST00000233662 ENSMUSP00000156759 TRANSLATION protein_coding stop - - 27.0 2.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000039770 Ypel5 ENSMUST00000233886 ENSMUSP00000156450 TRANSLATION protein_coding - CCDS28963.1 - 121.0 4.0 2.5 33.9 53.2 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000039770 Ypel5 ENSMUST00000233221 ENSMUSP00000156569 TRANSLATION protein_coding stop - - 13.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039770 Ypel5 ENSMUST00000045174 ENSMUSP00000037764 TRANSLATION protein_coding - CCDS28963.1 1 121.0 4.0 2.5 33.9 53.2 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000062327 T ENSMUST00000074667 ENSMUSP00000074236 TRANSLATION protein_coding - CCDS28383.1 1 436.0 3.0 3.95 21.7 244.9 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000062327 T ENSMUST00000177118 ENSMUSP00000135526 TRANSLATION protein_coding start/stop - 5 253.0 0.0 2.15 0.0 100.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000062327 T ENSMUST00000136922 ENSMUSP00000119581 TRANSLATION protein_coding stop - 5 137.0 1.0 2.5 0.0 172.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000007034 Slc44a4 ENSMUST00000007249 ENSMUSP00000007249 TRANSLATION protein_coding - CCDS37591.1 1 707.0 0.0 0.0 6.7 365.6 8.0 -4,-6 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000007034 Slc44a4 ENSMUST00000169230 ENSMUSP00000132965 TRANSLATION protein_coding - - 1 555.0 0.0 0.0 0.0 365.6 7.0 -4,-5 0.0805 6 6.0 MINOR ENSMUSG00000007034 Slc44a4 ENSMUST00000173664 - NO_TRANSLATION retained_intron ENSMUSG00000045019 Acer1 ENSMUST00000056113 ENSMUSP00000062037 TRANSLATION protein_coding - CCDS28919.1 1 273.0 0.0 6.0 0.1 187.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000034647 Ankrd12 ENSMUST00000233978 ENSMUSP00000156436 TRANSLATION protein_coding start - - 125.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000034647 Ankrd12 ENSMUST00000146090 - NO_TRANSLATION retained_intron ENSMUSG00000034647 Ankrd12 ENSMUST00000129756 - NO_TRANSLATION retained_intron ENSMUSG00000034647 Ankrd12 ENSMUST00000233407 ENSMUSP00000156536 TRANSLATION nonsense_mediated_decay - - - 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034647 Ankrd12 ENSMUST00000150766 ENSMUSP00000114237 TRANSLATION protein_coding stop - 1 441.0 0.0 3.132 0.0 71.7 0.0 -4,-5 0.044 2 -2.0 MINOR ENSMUSG00000034647 Ankrd12 ENSMUST00000124297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034647 Ankrd12 ENSMUST00000233045 ENSMUSP00000156634 TRANSLATION protein_coding stop - - 110.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034647 Ankrd12 ENSMUST00000143516 - NO_TRANSLATION retained_intron ENSMUSG00000034647 Ankrd12 ENSMUST00000135136 - NO_TRANSLATION retained_intron ENSMUSG00000034647 Ankrd12 ENSMUST00000038116 ENSMUSP00000039035 TRANSLATION protein_coding - CCDS28943.1 5 2041.0 0.0 3.132 0.1 71.7 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000034647 Ankrd12 ENSMUST00000139901 ENSMUSP00000156776 TRANSLATION nonsense_mediated_decay start - 5 52.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000015474 Ppt2 ENSMUST00000169287 ENSMUSP00000129421 TRANSLATION protein_coding stop - 3 102.0 3.0 2.0 0.0 0.0 0.0 2,-2 0.0019 2 -2.0 MINOR ENSMUSG00000015474 Ppt2 ENSMUST00000169067 ENSMUSP00000127372 TRANSLATION protein_coding - CCDS28652.1 5 302.0 8.0 7.66 3.3 57.6 0.0 2,-2 1.0 3 18.55 PRINCIPAL:1 ENSMUSG00000015474 Ppt2 ENSMUST00000064953 ENSMUSP00000068071 TRANSLATION protein_coding - CCDS28652.1 1 302.0 8.0 7.66 3.3 57.6 0.0 2,-2 1.0 3 18.55 PRINCIPAL:1 ENSMUSG00000015474 Ppt2 ENSMUST00000167097 ENSMUSP00000125937 TRANSLATION protein_coding stop - 5 236.0 7.0 6.16 0.0 35.0 0.0 2,-2 0.0023 3 -2.0 MINOR ENSMUSG00000015474 Ppt2 ENSMUST00000166040 ENSMUSP00000132006 TRANSLATION protein_coding - CCDS28652.1 3 302.0 8.0 7.66 3.3 57.6 0.0 2,-2 1.0 3 18.55 PRINCIPAL:1 ENSMUSG00000015474 Ppt2 ENSMUST00000168391 ENSMUSP00000132339 TRANSLATION protein_coding - CCDS28652.1 5 302.0 8.0 7.66 3.3 57.6 0.0 2,-2 1.0 3 18.55 PRINCIPAL:1 ENSMUSG00000015474 Ppt2 ENSMUST00000171376 ENSMUSP00000131243 TRANSLATION protein_coding - CCDS28652.1 1 302.0 8.0 7.66 3.3 57.6 0.0 2,-2 1.0 3 18.55 PRINCIPAL:1 ENSMUSG00000015474 Ppt2 ENSMUST00000169969 ENSMUSP00000127726 TRANSLATION protein_coding start - 3 247.0 8.0 6.66 0.0 62.3 0.0 -4,-2 0.0205 2 -2.0 MINOR ENSMUSG00000015474 Ppt2 ENSMUST00000170345 ENSMUSP00000127707 TRANSLATION protein_coding stop - 3 203.0 6.0 5.08 0.0 27.9 0.0 2,-2 0.0023 3 -2.0 MINOR ENSMUSG00000015474 Ppt2 ENSMUST00000171121 ENSMUSP00000127745 TRANSLATION protein_coding - CCDS28652.1 5 302.0 8.0 7.66 3.3 57.6 0.0 2,-2 1.0 3 18.55 PRINCIPAL:1 ENSMUSG00000015452 Ager ENSMUST00000015596 ENSMUSP00000015596 TRANSLATION protein_coding - CCDS28649.1 1 402.0 0.0 8.309 7.3 155.8 3.0 3,-2 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000015452 Ager ENSMUST00000174554 - NO_TRANSLATION retained_intron ENSMUSG00000015452 Ager ENSMUST00000173589 - NO_TRANSLATION retained_intron ENSMUSG00000015452 Ager ENSMUST00000172757 - NO_TRANSLATION retained_intron ENSMUSG00000015452 Ager ENSMUST00000174640 - NO_TRANSLATION retained_intron ENSMUSG00000015452 Ager ENSMUST00000184846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015452 Ager ENSMUST00000173992 ENSMUSP00000134579 TRANSLATION protein_coding - CCDS70796.1 1 384.0 0.0 7.715 0.1 130.7 3.0 3,-2 0.0906 10 9.306 MINOR ENSMUSG00000015452 Ager ENSMUST00000174496 ENSMUSP00000134401 TRANSLATION protein_coding - CCDS70795.1 1 393.0 0.0 8.045 2.3 155.8 3.0 3,-2 0.548 10 11.884 MINOR ENSMUSG00000015452 Ager ENSMUST00000172932 - NO_TRANSLATION retained_intron ENSMUSG00000015452 Ager ENSMUST00000174069 ENSMUSP00000133391 TRANSLATION nonsense_mediated_decay - - 1 333.0 0.0 7.544 0.0 155.8 0.0 3,-2 0.0628 9 -2.0 MINOR ENSMUSG00000015452 Ager ENSMUST00000170161 - NO_TRANSLATION retained_intron ENSMUSG00000015452 Ager ENSMUST00000173551 - NO_TRANSLATION retained_intron ENSMUSG00000015452 Ager ENSMUST00000184805 - NO_TRANSLATION retained_intron ENSMUSG00000091705 H2-Q2 ENSMUST00000173115 ENSMUSP00000133989 TRANSLATION protein_coding start - 3 76.0 0.0 1.5 0.0 26.0 1.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000091705 H2-Q2 ENSMUST00000074806 ENSMUSP00000078138 TRANSLATION protein_coding - CCDS28696.1 1 360.0 0.0 4.5 2.4 380.9 1.0 3,-4 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000095325 Zfp870 ENSMUST00000235054 ENSMUSP00000157039 TRANSLATION protein_coding - - - 71.0 0.0 1.12 0.0 81.7 0.0 -4,-5 0.0 - 2.922 MINOR ENSMUSG00000095325 Zfp870 ENSMUST00000228075 ENSMUSP00000154207 TRANSLATION protein_coding - - - 561.0 46.0 2.3 0.4 245.6 0.0 -4,-5 0.8007 1 18.0 PRINCIPAL:1 ENSMUSG00000095325 Zfp870 ENSMUST00000178401 ENSMUSP00000136197 TRANSLATION protein_coding start - 5 560.0 46.0 2.3 0.4 245.6 0.0 -4,-5 0.5921 1 -2.0 MINOR ENSMUSG00000095325 Zfp870 ENSMUST00000228410 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058626 Capn11 ENSMUST00000120717 ENSMUSP00000113132 TRANSLATION protein_coding - CCDS50121.1 1 714.0 16.0 14.235 3.9 575.8 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000058626 Capn11 ENSMUST00000151350 ENSMUSP00000119679 TRANSLATION non_stop_decay - - 3 174.0 0.0 1.55 0.0 46.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000057388 Mrpl18 ENSMUST00000159765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057388 Mrpl18 ENSMUST00000162928 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057388 Mrpl18 ENSMUST00000079121 ENSMUSP00000078123 TRANSLATION protein_coding - CCDS28396.1 1 180.0 0.0 2.75 12.7 0.0 0.0 -2,0 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000057388 Mrpl18 ENSMUST00000162781 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057388 Mrpl18 ENSMUST00000162978 - NO_TRANSLATION retained_intron ENSMUSG00000042265 Trem1 ENSMUST00000048782 ENSMUSP00000038636 TRANSLATION protein_coding - CCDS28860.1 1 230.0 0.0 1.2 0.4 57.1 1.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042265 Trem1 ENSMUST00000113251 ENSMUSP00000108877 TRANSLATION protein_coding - CCDS84319.1 1 111.0 0.0 0.2 0.0 0.0 1.0 2,-2 0.0512 - 1.002 MINOR ENSMUSG00000002280 Ciao3 ENSMUST00000237541 ENSMUSP00000157987 TRANSLATION protein_coding - - - 377.0 6.0 6.8 0.0 0.0 0.0 -4,-5 0.0 9 7.5 MINOR ENSMUSG00000002280 Ciao3 ENSMUST00000236424 - NO_TRANSLATION retained_intron ENSMUSG00000002280 Ciao3 ENSMUST00000149645 - NO_TRANSLATION retained_intron ENSMUSG00000002280 Ciao3 ENSMUST00000154711 - NO_TRANSLATION retained_intron ENSMUSG00000002280 Ciao3 ENSMUST00000002350 ENSMUSP00000002350 TRANSLATION protein_coding - CCDS50034.1 1 476.0 6.0 9.05 29.2 30.2 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000002280 Ciao3 ENSMUST00000131458 ENSMUSP00000120281 TRANSLATION nonsense_mediated_decay - - 5 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000002280 Ciao3 ENSMUST00000134108 ENSMUSP00000117136 TRANSLATION protein_coding - - 1 492.0 6.0 8.8 0.0 30.2 0.0 -4,-5 0.03 11 17.502 MINOR ENSMUSG00000002280 Ciao3 ENSMUST00000130861 - NO_TRANSLATION retained_intron ENSMUSG00000037446 Tulp1 ENSMUST00000130877 - NO_TRANSLATION retained_intron ENSMUSG00000037446 Tulp1 ENSMUST00000129375 ENSMUSP00000121444 TRANSLATION nonsense_mediated_decay start - 2 42.0 0.0 1.0 0.0 37.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000037446 Tulp1 ENSMUST00000131604 ENSMUSP00000156761 TRANSLATION nonsense_mediated_decay start - 3 144.0 1.0 2.0 0.0 65.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037446 Tulp1 ENSMUST00000140250 - NO_TRANSLATION retained_intron ENSMUSG00000037446 Tulp1 ENSMUST00000233921 ENSMUSP00000156934 TRANSLATION protein_coding start - - 108.0 4.0 2.0 0.0 142.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037446 Tulp1 ENSMUST00000233420 ENSMUSP00000156826 TRANSLATION protein_coding - - - 492.0 5.0 5.83 0.0 290.3 0.0 -4,-5 0.7735 - 12.998 PRINCIPAL:2 ENSMUSG00000037446 Tulp1 ENSMUST00000041819 ENSMUSP00000049070 TRANSLATION protein_coding - CCDS28578.1 1 543.0 5.0 5.83 0.4 290.3 0.0 -4,-5 0.2986 - 12.998 ALTERNATIVE:2 ENSMUSG00000037446 Tulp1 ENSMUST00000114794 ENSMUSP00000110442 TRANSLATION protein_coding - - 1 486.0 1.0 3.83 0.0 134.1 0.0 -4,-5 0.0321 - 3.0 MINOR ENSMUSG00000037446 Tulp1 ENSMUST00000150341 - NO_TRANSLATION retained_intron ENSMUSG00000037446 Tulp1 ENSMUST00000123797 ENSMUSP00000116588 TRANSLATION protein_coding start - 3 256.0 6.0 4.83 0.0 213.6 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000037446 Tulp1 ENSMUST00000142143 - NO_TRANSLATION retained_intron ENSMUSG00000037446 Tulp1 ENSMUST00000125876 - NO_TRANSLATION retained_intron ENSMUSG00000037446 Tulp1 ENSMUST00000146493 - NO_TRANSLATION retained_intron ENSMUSG00000037446 Tulp1 ENSMUST00000148188 ENSMUSP00000116844 TRANSLATION protein_coding - - 1 122.0 4.0 2.5 0.0 153.5 0.0 -4,-6 0.0 - 4.002 MINOR ENSMUSG00000032937 Fshr ENSMUST00000035701 ENSMUSP00000040477 TRANSLATION protein_coding - CCDS29026.1 1 692.0 0.0 7.45 2.9 241.7 0.0 3,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000039193 Nlrc4 ENSMUST00000233637 ENSMUSP00000156704 TRANSLATION nonsense_mediated_decay - - - 116.0 0.0 1.5 0.0 70.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000039193 Nlrc4 ENSMUST00000052124 ENSMUSP00000059637 TRANSLATION protein_coding - CCDS37692.1 1 1024.0 11.0 8.05 4.3 162.9 0.0 -4,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000039193 Nlrc4 ENSMUST00000234086 ENSMUSP00000157167 TRANSLATION protein_coding - - - 1036.0 11.0 7.55 0.0 141.5 0.0 -4,-7 0.0516 8 15.714 MINOR ENSMUSG00000073386 9830107B12Rik ENSMUST00000233337 ENSMUSP00000156705 TRANSLATION protein_coding - - - 198.0 0.0 2.29 0.0 50.9 1.0 4,-1 0.1297 - 8.0 ALTERNATIVE:2 ENSMUSG00000073386 9830107B12Rik ENSMUST00000233614 ENSMUSP00000156923 TRANSLATION protein_coding - - - 149.0 0.0 1.29 0.0 35.7 1.0 2,-2 0.0082 - 3.378 MINOR ENSMUSG00000073386 9830107B12Rik ENSMUST00000063481 ENSMUSP00000070138 TRANSLATION protein_coding - CCDS37645.1 1 160.0 0.0 2.29 0.0 50.9 0.0 4,-1 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000109739 Gm17949 ENSMUST00000210548 ENSMUSP00000147681 TRANSLATION protein_coding - - 5 212.0 7.0 4.5 3.5 142.3 0.0 -4,-5 0.8119 2 19.0 PRINCIPAL:1 ENSMUSG00000004864 Mapk13 ENSMUST00000129096 ENSMUSP00000115659 TRANSLATION nonsense_mediated_decay - - 5 257.0 18.0 5.58 0.0 158.4 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000004864 Mapk13 ENSMUST00000233051 ENSMUSP00000156822 TRANSLATION nonsense_mediated_decay - - - 40.0 4.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000004864 Mapk13 ENSMUST00000004986 ENSMUSP00000004986 TRANSLATION protein_coding start - 1 308.0 20.0 8.44 0.0 198.9 0.0 -4,-6 0.0058 6 -2.0 MINOR ENSMUSG00000004864 Mapk13 ENSMUST00000133786 ENSMUSP00000156911 TRANSLATION nonsense_mediated_decay - - 3 62.0 4.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004864 Mapk13 ENSMUST00000233460 ENSMUSP00000156486 TRANSLATION protein_coding stop - - 186.0 15.0 5.08 0.0 69.7 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000004864 Mapk13 ENSMUST00000124099 - NO_TRANSLATION retained_intron ENSMUSG00000004864 Mapk13 ENSMUST00000233109 ENSMUSP00000156487 TRANSLATION protein_coding stop - - 266.0 18.0 7.41 0.0 161.4 0.0 -4,-7 0.0004 8 -2.0 MINOR ENSMUSG00000004864 Mapk13 ENSMUST00000233984 ENSMUSP00000156387 TRANSLATION protein_coding - CCDS28584.1 - 366.0 21.0 9.94 22.5 235.6 0.0 -4,-7 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000004864 Mapk13 ENSMUST00000233676 ENSMUSP00000156787 TRANSLATION nonsense_mediated_decay - - - 227.0 18.0 5.58 0.0 159.7 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000116876 Gm49721 ENSMUST00000231550 ENSMUSP00000156290 TRANSLATION nonsense_mediated_decay,RT - CCDS37429.1 - 259.0 6.0 4.75 1.1 204.8 0.0 1,-3 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000064121 Or11a4 ENSMUST00000078209 ENSMUSP00000077338 TRANSLATION protein_coding - CCDS28740.1 - 313.0 0.0 1.0 2.1 178.3 7.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000064121 Or11a4 ENSMUST00000214482 ENSMUSP00000151151 TRANSLATION protein_coding - CCDS28740.1 5 313.0 0.0 1.0 2.1 178.3 7.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000064121 Or11a4 ENSMUST00000213475 ENSMUSP00000150010 TRANSLATION protein_coding - CCDS28740.1 5 313.0 0.0 1.0 2.1 178.3 7.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000025737 Wdr24 ENSMUST00000026833 ENSMUSP00000026833 TRANSLATION protein_coding - CCDS28531.1 1 790.0 0.0 0.86 24.1 27.6 0.0 -4,-2 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000025737 Wdr24 ENSMUST00000160829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025737 Wdr24 ENSMUST00000160275 - NO_TRANSLATION retained_intron ENSMUSG00000025737 Wdr24 ENSMUST00000160349 - NO_TRANSLATION retained_intron ENSMUSG00000091859 Vmn2r100 ENSMUST00000166081 ENSMUSP00000128350 TRANSLATION protein_coding - CCDS49977.1 5 850.0 4.0 2.888 0.0 388.9 5.0 2,-3 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000091859 Vmn2r100 ENSMUST00000231465 ENSMUSP00000156263 TRANSLATION protein_coding - - - 787.0 4.0 2.408 0.0 388.7 5.0 2,-3 0.1035 - 11.004 ALTERNATIVE:2 ENSMUSG00000045551 Fpr1 ENSMUST00000061516 ENSMUSP00000052894 TRANSLATION protein_coding - CCDS28418.1 1 364.0 0.0 1.0 0.4 132.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050668 Gpatch11 ENSMUST00000170759 ENSMUSP00000126814 TRANSLATION protein_coding - CCDS28979.1 1 264.0 3.0 0.0 10.2 121.9 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000050668 Gpatch11 ENSMUST00000233113 ENSMUSP00000156550 TRANSLATION protein_coding stop - - 92.0 0.0 0.0 0.0 20.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050668 Gpatch11 ENSMUST00000233913 - NO_TRANSLATION retained_intron ENSMUSG00000050668 Gpatch11 ENSMUST00000233775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050668 Gpatch11 ENSMUST00000233545 - NO_TRANSLATION retained_intron ENSMUSG00000023883 Phf10 ENSMUST00000024657 ENSMUSP00000024657 TRANSLATION protein_coding - CCDS28407.2 1 497.0 16.0 1.59 2.5 34.4 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000023883 Phf10 ENSMUST00000168938 ENSMUSP00000125917 TRANSLATION nonsense_mediated_decay - - 5 234.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 5 -2.0 MINOR ENSMUSG00000023883 Phf10 ENSMUST00000171526 - NO_TRANSLATION retained_intron ENSMUSG00000023883 Phf10 ENSMUST00000167805 - NO_TRANSLATION retained_intron ENSMUSG00000023883 Phf10 ENSMUST00000172054 - NO_TRANSLATION retained_intron ENSMUSG00000024210 Ip6k3 ENSMUST00000025046 ENSMUSP00000025046 TRANSLATION protein_coding - CCDS28562.1 1 396.0 12.0 0.92 0.4 220.2 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000032796 Lama1 ENSMUST00000035471 ENSMUSP00000043957 TRANSLATION protein_coding - CCDS37681.1 1 3083.0 3.0 32.64 3.6 1865.6 0.0 4,-1 1.0 37 16.0 PRINCIPAL:1 ENSMUSG00000032796 Lama1 ENSMUST00000233821 - NO_TRANSLATION retained_intron ENSMUSG00000032796 Lama1 ENSMUST00000233224 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051611 Or14j9 ENSMUST00000213274 ENSMUSP00000150904 TRANSLATION protein_coding - CCDS28756.1 5 320.0 0.0 1.6 3.7 152.7 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051611 Or14j9 ENSMUST00000173676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051611 Or14j9 ENSMUST00000208832 ENSMUSP00000146666 TRANSLATION protein_coding - CCDS28756.1 1 320.0 0.0 1.6 3.7 152.7 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051611 Or14j9 ENSMUST00000174798 ENSMUSP00000133654 TRANSLATION protein_coding stop - 1 300.0 0.0 1.0 0.0 145.7 6.0 -4,-7 0.0338 - -2.0 MINOR ENSMUSG00000051611 Or14j9 ENSMUST00000085548 ENSMUSP00000082684 TRANSLATION protein_coding - CCDS28756.1 5 320.0 0.0 1.6 3.7 152.7 6.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000010592 Dazl ENSMUST00000010736 ENSMUSP00000010736 TRANSLATION protein_coding - CCDS37649.1 1 298.0 0.0 2.95 7.3 51.7 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000010592 Dazl ENSMUST00000233620 - NO_TRANSLATION retained_intron ENSMUSG00000010592 Dazl ENSMUST00000233756 - NO_TRANSLATION retained_intron ENSMUSG00000010592 Dazl ENSMUST00000232796 ENSMUSP00000156819 TRANSLATION protein_coding start - - 133.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000010592 Dazl ENSMUST00000232875 - NO_TRANSLATION retained_intron ENSMUSG00000010592 Dazl ENSMUST00000233248 ENSMUSP00000156777 TRANSLATION protein_coding - - - 261.0 0.0 2.75 2.0 51.7 0.0 -4,-5 0.1697 1 11.91 MINOR ENSMUSG00000024019 Cmtr1 ENSMUST00000172610 - NO_TRANSLATION retained_intron ENSMUSG00000024019 Cmtr1 ENSMUST00000234666 - NO_TRANSLATION retained_intron ENSMUSG00000024019 Cmtr1 ENSMUST00000130052 ENSMUSP00000157162 TRANSLATION protein_coding stop - 5 165.0 23.0 5.32 0.0 75.3 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000024019 Cmtr1 ENSMUST00000024816 ENSMUSP00000024816 TRANSLATION protein_coding - CCDS37539.1 1 837.0 27.0 20.146 12.7 181.0 0.0 -4,-5 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000024019 Cmtr1 ENSMUST00000128410 - NO_TRANSLATION retained_intron ENSMUSG00000024019 Cmtr1 ENSMUST00000130423 ENSMUSP00000122706 TRANSLATION protein_coding stop - 3 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024019 Cmtr1 ENSMUST00000235028 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024019 Cmtr1 ENSMUST00000235014 ENSMUSP00000157368 TRANSLATION protein_coding stop - - 225.0 2.0 3.18 0.0 48.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000024019 Cmtr1 ENSMUST00000234388 ENSMUSP00000157320 TRANSLATION protein_coding start/stop - - 147.0 18.0 5.08 0.0 30.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024019 Cmtr1 ENSMUST00000234716 - NO_TRANSLATION retained_intron ENSMUSG00000024019 Cmtr1 ENSMUST00000234278 - NO_TRANSLATION retained_intron ENSMUSG00000024019 Cmtr1 ENSMUST00000127695 ENSMUSP00000157200 TRANSLATION protein_coding stop - 3 72.0 9.0 2.9 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000024019 Cmtr1 ENSMUST00000138939 - NO_TRANSLATION retained_intron ENSMUSG00000024019 Cmtr1 ENSMUST00000234911 ENSMUSP00000157171 TRANSLATION protein_coding stop - - 844.0 27.0 19.705 0.0 181.0 0.0 -4,-5 0.1226 20 -2.0 MINOR ENSMUSG00000024019 Cmtr1 ENSMUST00000172516 ENSMUSP00000157341 TRANSLATION nonsense_mediated_decay start - 3 37.0 0.0 0.66 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024019 Cmtr1 ENSMUST00000235031 ENSMUSP00000157075 TRANSLATION protein_coding stop - - 369.0 25.0 7.43 0.0 140.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000024019 Cmtr1 ENSMUST00000129864 ENSMUSP00000134356 TRANSLATION protein_coding stop - 2 68.0 4.0 2.24 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054940 Or2j3 ENSMUST00000057394 ENSMUSP00000051537 TRANSLATION protein_coding - CCDS28780.1 - 312.0 0.0 1.0 9.4 165.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054940 Or2j3 ENSMUST00000213505 ENSMUSP00000150173 TRANSLATION protein_coding - CCDS28780.1 5 312.0 0.0 1.0 9.4 165.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057203 Vmn1r234 ENSMUST00000237806 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057203 Vmn1r234 ENSMUST00000235895 ENSMUSP00000157848 TRANSLATION protein_coding - CCDS28435.1 - 329.0 0.0 0.0 0.0 86.9 6.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000057203 Vmn1r234 ENSMUST00000079633 ENSMUSP00000078579 TRANSLATION protein_coding - CCDS28435.1 - 329.0 0.0 0.0 0.0 86.9 6.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000038541 Srd5a2 ENSMUST00000043458 ENSMUSP00000048862 TRANSLATION protein_coding - CCDS28968.1 1 254.0 0.0 4.55 10.3 198.9 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000024223 Armc12 ENSMUST00000025060 ENSMUSP00000025060 TRANSLATION protein_coding - - 1 330.0 0.0 5.33 2.1 54.5 3.0 -4,-7 0.1407 3 5.712 MINOR ENSMUSG00000024223 Armc12 ENSMUST00000232814 - NO_TRANSLATION retained_intron ENSMUSG00000024223 Armc12 ENSMUST00000233114 ENSMUSP00000156782 TRANSLATION nonsense_mediated_decay - - - 112.0 0.0 1.0 0.0 0.0 3.0 -4,-7 0.0017 - -2.0 MINOR ENSMUSG00000024223 Armc12 ENSMUST00000233837 ENSMUSP00000156958 TRANSLATION protein_coding - - - 366.0 0.0 5.66 6.1 76.8 3.0 -4,-7 0.7172 3 7.728 ALTERNATIVE:1 ENSMUSG00000024223 Armc12 ENSMUST00000233923 ENSMUSP00000156794 TRANSLATION protein_coding - CCDS28579.1 - 340.0 0.0 5.66 6.9 76.8 3.0 -4,-7 1.0 3 8.0 PRINCIPAL:2 ENSMUSG00000024002 Brd4 ENSMUST00000230982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024002 Brd4 ENSMUST00000120276 ENSMUSP00000112474 TRANSLATION protein_coding - CCDS37554.1 5 723.0 0.0 5.53 3.9 250.5 0.0 -4,-5 1.0 10 8.4 MINOR ENSMUSG00000024002 Brd4 ENSMUST00000230858 ENSMUSP00000155477 TRANSLATION protein_coding start/stop - - 169.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024002 Brd4 ENSMUST00000237692 ENSMUSP00000158128 TRANSLATION protein_coding stop - - 572.0 0.0 5.53 0.0 148.7 0.0 -4,-5 0.0371 9 -2.0 MINOR ENSMUSG00000024002 Brd4 ENSMUST00000127893 ENSMUSP00000115163 TRANSLATION protein_coding stop - 1 557.0 0.0 5.53 0.0 148.7 0.0 -4,-5 0.0357 9 -2.0 MINOR ENSMUSG00000024002 Brd4 ENSMUST00000229020 - NO_TRANSLATION retained_intron ENSMUSG00000024002 Brd4 ENSMUST00000125899 ENSMUSP00000115277 TRANSLATION nonsense_mediated_decay - - 1 146.0 0.0 2.33 0.0 71.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024002 Brd4 ENSMUST00000121285 ENSMUSP00000113070 TRANSLATION protein_coding - CCDS50057.1 1 1400.0 0.0 5.53 1.0 336.6 0.0 -4,-5 0.7768 16 8.0 ALTERNATIVE:2 ENSMUSG00000024002 Brd4 ENSMUST00000003726 ENSMUSP00000003726 TRANSLATION protein_coding - CCDS70784.1 1 1401.0 0.0 5.53 1.0 336.6 0.0 -4,-5 0.7832 16 8.0 PRINCIPAL:4 ENSMUSG00000024002 Brd4 ENSMUST00000237008 ENSMUSP00000158466 TRANSLATION protein_coding stop - - 133.0 0.0 2.0 0.0 54.7 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024002 Brd4 ENSMUST00000235598 ENSMUSP00000157981 TRANSLATION nonsense_mediated_decay - - - 146.0 0.0 2.33 0.0 71.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024002 Brd4 ENSMUST00000230565 - NO_TRANSLATION retained_intron ENSMUSG00000036438 Calm2 ENSMUST00000040440 ENSMUSP00000048857 TRANSLATION protein_coding - CCDS37716.1 1 149.0 38.0 4.16 36.9 126.5 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000036438 Calm2 ENSMUST00000143965 - NO_TRANSLATION retained_intron ENSMUSG00000036438 Calm2 ENSMUST00000150137 - NO_TRANSLATION retained_intron ENSMUSG00000036438 Calm2 ENSMUST00000238271 ENSMUSP00000158587 TRANSLATION nonsense_mediated_decay - - - 37.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - -2.0 MINOR ENSMUSG00000036438 Calm2 ENSMUST00000234406 ENSMUSP00000157025 TRANSLATION protein_coding - - - 113.0 30.0 3.08 14.1 108.8 0.0 -4,-5 0.2072 - 10.904 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000231105 ENSMUSP00000154989 TRANSLATION nonsense_mediated_decay - - - 302.0 0.0 5.0 0.0 29.1 0.0 -4,-5 0.0009 8 -2.0 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000229328 - NO_TRANSLATION retained_intron ENSMUSG00000024059 Clip4 ENSMUST00000229903 - NO_TRANSLATION retained_intron ENSMUSG00000024059 Clip4 ENSMUST00000229874 ENSMUSP00000154969 TRANSLATION protein_coding - - - 694.0 0.0 10.098 0.0 191.6 0.0 -4,-5 0.0249 14 5.364 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000230700 - NO_TRANSLATION retained_intron ENSMUSG00000024059 Clip4 ENSMUST00000230749 ENSMUSP00000155844 TRANSLATION nonsense_mediated_decay - - - 401.0 0.0 7.0 0.0 109.1 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000229304 ENSMUSP00000155653 TRANSLATION nonsense_mediated_decay - - - 494.0 0.0 7.0 2.1 109.1 0.0 -4,-5 0.0426 - -2.0 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000231131 ENSMUSP00000155235 TRANSLATION protein_coding start - - 142.0 0.0 1.198 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000229288 ENSMUSP00000155637 TRANSLATION protein_coding stop - - 216.0 0.0 4.4 0.0 29.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000230333 ENSMUSP00000154878 TRANSLATION protein_coding - - - 598.0 0.0 9.573 1.1 191.6 0.0 -4,-5 0.0186 13 4.346 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000230427 ENSMUSP00000155130 TRANSLATION protein_coding - - - 219.0 0.0 4.4 0.0 29.5 0.0 -4,-5 0.0 6 0.0 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000229952 ENSMUSP00000155140 TRANSLATION protein_coding - - - 551.0 0.0 9.073 0.0 183.6 0.0 -4,-5 0.0147 12 2.832 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000230845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024059 Clip4 ENSMUST00000230160 ENSMUSP00000155323 TRANSLATION protein_coding start - - 288.0 0.0 3.698 0.0 138.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000230305 ENSMUSP00000154861 TRANSLATION protein_coding - - - 598.0 0.0 9.573 1.1 191.6 0.0 -4,-5 0.0186 13 4.346 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000230747 ENSMUSP00000155452 TRANSLATION nonsense_mediated_decay - - - 494.0 0.0 7.0 2.1 109.1 0.0 -4,-5 0.0426 10 -2.0 MINOR ENSMUSG00000024059 Clip4 ENSMUST00000229014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024059 Clip4 ENSMUST00000024854 ENSMUSP00000024854 TRANSLATION protein_coding - CCDS37687.1 1 704.0 0.0 11.098 14.1 268.9 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000024059 Clip4 ENSMUST00000230290 ENSMUSP00000154993 TRANSLATION protein_coding start/stop - - 79.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023868 Pde10a ENSMUST00000115717 ENSMUSP00000138135 TRANSLATION nonsense_mediated_decay - - 5 151.0 0.0 0.898 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023868 Pde10a ENSMUST00000115720 ENSMUSP00000111385 TRANSLATION protein_coding - CCDS84274.1 1 779.0 19.0 14.8405 1.9 343.8 0.0 -4,-5 0.4271 18 18.29 MINOR ENSMUSG00000023868 Pde10a ENSMUST00000089085 ENSMUSP00000086485 TRANSLATION protein_coding - CCDS28384.1 1 796.0 19.0 14.8405 7.2 343.8 0.0 -4,-5 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000023868 Pde10a ENSMUST00000115724 ENSMUSP00000111389 TRANSLATION protein_coding - - 5 850.0 19.0 14.8405 1.1 343.8 0.0 -4,-5 0.2164 19 18.032 MINOR ENSMUSG00000023868 Pde10a ENSMUST00000115708 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023868 Pde10a ENSMUST00000115715 ENSMUSP00000111380 TRANSLATION protein_coding - - 5 716.0 19.0 14.525 2.2 343.8 0.0 -4,-5 0.181 18 17.758 MINOR ENSMUSG00000023868 Pde10a ENSMUST00000141877 - NO_TRANSLATION retained_intron ENSMUSG00000023868 Pde10a ENSMUST00000233016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023868 Pde10a ENSMUST00000136160 ENSMUSP00000156648 TRANSLATION protein_coding stop - 5 123.0 0.0 0.898 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023868 Pde10a ENSMUST00000115722 - NO_TRANSLATION retained_intron ENSMUSG00000023868 Pde10a ENSMUST00000233052 ENSMUSP00000156509 TRANSLATION protein_coding stop - - 238.0 0.0 2.3255 0.0 37.7 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000023868 Pde10a ENSMUST00000149440 ENSMUSP00000123216 TRANSLATION protein_coding - - 1 727.0 19.0 14.525 0.0 343.8 0.0 -4,-5 0.0403 18 17.37 MINOR ENSMUSG00000023868 Pde10a ENSMUST00000024647 ENSMUSP00000024647 TRANSLATION protein_coding - - 1 716.0 19.0 14.525 2.2 343.8 0.0 -4,-5 0.181 18 17.758 MINOR ENSMUSG00000023868 Pde10a ENSMUST00000233652 - NO_TRANSLATION retained_intron ENSMUSG00000095961 Vmn2r102 ENSMUST00000171741 ENSMUSP00000126559 TRANSLATION protein_coding - CCDS49979.1 5 857.0 4.0 2.3 0.1 400.1 0.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000019489 Cd70 ENSMUST00000019633 ENSMUSP00000019633 TRANSLATION protein_coding - CCDS28927.1 1 195.0 0.0 0.0 0.1 25.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000056399 Prss34 ENSMUST00000249718 ENSMUSP00000159888 TRANSLATION protein_coding - - - 307.0 5.0 4.0 0.0 166.0 0.0 -,- 0.0171 2 14.004 MINOR ENSMUSG00000056399 Prss34 ENSMUST00000037453 ENSMUSP00000045672 TRANSLATION protein_coding - CCDS28514.1 1 318.0 6.0 4.33 0.1 204.9 0.0 -,- 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000056399 Prss34 ENSMUST00000249717 - NO_TRANSLATION retained_intron ENSMUSG00000079553 Kifc1 ENSMUST00000173492 ENSMUSP00000134572 TRANSLATION protein_coding - CCDS57065.1 1 674.0 11.0 3.318 4.8 315.5 0.0 -4,-7 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000079553 Kifc1 ENSMUST00000172608 - NO_TRANSLATION retained_intron ENSMUSG00000079553 Kifc1 ENSMUST00000173982 ENSMUSP00000133520 TRANSLATION protein_coding start - 3 79.0 0.0 0.48 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079553 Kifc1 ENSMUST00000173386 ENSMUSP00000133758 TRANSLATION protein_coding stop - 5 218.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 1 -2.0 MINOR ENSMUSG00000079553 Kifc1 ENSMUST00000174507 - NO_TRANSLATION retained_intron ENSMUSG00000079553 Kifc1 ENSMUST00000173885 - NO_TRANSLATION retained_intron ENSMUSG00000037537 H2-M11 ENSMUST00000041964 ENSMUSP00000042522 TRANSLATION protein_coding stop - 1 335.0 0.0 4.0 0.0 197.9 0.0 3,-2 0.8413 - -2.0 PRINCIPAL:1 ENSMUSG00000024300 Myo1f ENSMUST00000173426 - NO_TRANSLATION retained_intron ENSMUSG00000024300 Myo1f ENSMUST00000174695 ENSMUSP00000134600 TRANSLATION protein_coding stop - 2 97.0 7.0 2.1 0.0 71.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024300 Myo1f ENSMUST00000173372 ENSMUSP00000134715 TRANSLATION nonsense_mediated_decay - - 1 785.0 16.0 15.724 0.0 902.6 0.0 -4,-6 0.0639 10 -2.0 MINOR ENSMUSG00000024300 Myo1f ENSMUST00000235099 - NO_TRANSLATION retained_intron ENSMUSG00000024300 Myo1f ENSMUST00000087605 ENSMUSP00000084887 TRANSLATION protein_coding - CCDS37567.1 1 1098.0 16.0 16.904 8.4 1058.6 0.0 -4,-6 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000059408 Mrgprh ENSMUST00000075296 ENSMUSP00000074768 TRANSLATION protein_coding - CCDS28395.1 - 321.0 0.0 0.5 0.4 43.9 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000060017 Or10al5 ENSMUST00000074555 ENSMUSP00000084377 TRANSLATION protein_coding - CCDS28763.1 1 321.0 0.0 1.0 0.4 189.4 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060017 Or10al5 ENSMUST00000174675 ENSMUSP00000133865 TRANSLATION protein_coding - CCDS28763.1 5 321.0 0.0 1.0 0.4 189.4 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000039628 Hs3st6 ENSMUST00000234340 ENSMUSP00000157161 TRANSLATION nonsense_mediated_decay - - - 138.0 9.0 0.93 0.0 23.7 1.0 -3,-4 0.0027 - -2.0 MINOR ENSMUSG00000039628 Hs3st6 ENSMUST00000235111 ENSMUSP00000157084 TRANSLATION nonsense_mediated_decay - - - 147.0 9.0 0.93 0.0 24.5 1.0 -3,-4 0.0027 - -2.0 MINOR ENSMUSG00000039628 Hs3st6 ENSMUST00000044922 ENSMUSP00000040919 TRANSLATION protein_coding - CCDS28496.1 1 342.0 21.0 1.93 0.1 142.6 1.0 -3,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039628 Hs3st6 ENSMUST00000234202 ENSMUSP00000157206 TRANSLATION protein_coding - - - 332.0 21.0 1.6 0.1 129.9 1.0 -3,-4 0.0454 - 16.212 MINOR ENSMUSG00000055202 Zfp811 ENSMUST00000200914 ENSMUSP00000144038 TRANSLATION protein_coding - CCDS79528.1 1 552.0 50.0 2.0 0.3 293.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000055202 Zfp811 ENSMUST00000080905 ENSMUSP00000079709 TRANSLATION protein_coding start - 5 551.0 50.0 2.0 0.3 293.3 0.0 -4,-5 0.5536 - -2.0 MINOR ENSMUSG00000055202 Zfp811 ENSMUST00000234594 ENSMUSP00000157159 TRANSLATION protein_coding - - - 64.0 0.0 1.45 0.3 82.2 0.0 -4,-5 0.0 - 4.35 MINOR ENSMUSG00000048027 Rgmb ENSMUST00000231985 ENSMUSP00000156015 TRANSLATION protein_coding stop - - 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048027 Rgmb ENSMUST00000170578 ENSMUSP00000126177 TRANSLATION protein_coding - CCDS37455.1 1 436.0 4.0 3.8 0.0 442.0 0.0 -1,-4 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000048027 Rgmb ENSMUST00000238157 ENSMUSP00000157870 TRANSLATION protein_coding stop - - 135.0 4.0 1.0 0.0 0.0 0.0 -3,-5 0.0008 - -2.0 MINOR ENSMUSG00000048027 Rgmb ENSMUST00000231906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048027 Rgmb ENSMUST00000232638 ENSMUSP00000156285 TRANSLATION protein_coding - - - 239.0 4.0 3.0 0.0 198.3 0.0 -1,-4 0.0 1 8.398 MINOR ENSMUSG00000048027 Rgmb ENSMUST00000232592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048027 Rgmb ENSMUST00000231281 ENSMUSP00000156133 TRANSLATION protein_coding stop - - 158.0 4.0 2.0 0.0 88.7 0.0 -1,-4 0.0 1 -2.0 MINOR ENSMUSG00000023968 Crip3 ENSMUST00000165993 ENSMUSP00000130072 TRANSLATION protein_coding - - 2 244.0 16.0 4.525 0.0 95.6 0.0 -4,-6 0.0161 - 18.0 MINOR ENSMUSG00000023968 Crip3 ENSMUST00000164180 - NO_TRANSLATION retained_intron ENSMUSG00000023968 Crip3 ENSMUST00000169441 - NO_TRANSLATION retained_intron ENSMUSG00000023968 Crip3 ENSMUST00000165750 - NO_TRANSLATION retained_intron ENSMUSG00000023968 Crip3 ENSMUST00000113465 ENSMUSP00000109092 TRANSLATION protein_coding - CCDS37635.1 1 205.0 16.0 4.525 0.0 95.6 0.0 -4,-6 0.325 - 18.0 MINOR ENSMUSG00000023968 Crip3 ENSMUST00000024764 ENSMUSP00000024764 TRANSLATION protein_coding - CCDS28828.1 1 204.0 16.0 4.491 9.2 95.6 0.0 -4,-6 1.0 - 20.934 PRINCIPAL:1 ENSMUSG00000023968 Crip3 ENSMUST00000165811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002372 Ranbp3 ENSMUST00000233029 - NO_TRANSLATION retained_intron ENSMUSG00000002372 Ranbp3 ENSMUST00000233617 - NO_TRANSLATION retained_intron ENSMUSG00000002372 Ranbp3 ENSMUST00000002445 ENSMUSP00000002445 TRANSLATION protein_coding - CCDS28911.1 1 491.0 0.0 4.0 3.7 50.5 0.0 -4,-5 1.0 16 7.0 PRINCIPAL:2 ENSMUSG00000002372 Ranbp3 ENSMUST00000233319 ENSMUSP00000156588 TRANSLATION protein_coding - - - 558.0 0.0 4.0 3.0 50.5 0.0 -4,-5 0.5682 16 6.741 ALTERNATIVE:2 ENSMUSG00000002372 Ranbp3 ENSMUST00000232922 - NO_TRANSLATION retained_intron ENSMUSG00000002372 Ranbp3 ENSMUST00000232975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002372 Ranbp3 ENSMUST00000233305 - NO_TRANSLATION retained_intron ENSMUSG00000002372 Ranbp3 ENSMUST00000233727 - NO_TRANSLATION retained_intron ENSMUSG00000007603 Dus3l ENSMUST00000232684 - NO_TRANSLATION retained_intron ENSMUSG00000007603 Dus3l ENSMUST00000233290 - NO_TRANSLATION retained_intron ENSMUSG00000007603 Dus3l ENSMUST00000233549 - NO_TRANSLATION retained_intron ENSMUSG00000007603 Dus3l ENSMUST00000007747 ENSMUSP00000007747 TRANSLATION protein_coding - CCDS28914.1 1 637.0 17.0 3.83 0.1 193.6 0.0 -4,-5 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000048915 Efna5 ENSMUST00000078839 ENSMUSP00000077883 TRANSLATION protein_coding - CCDS28934.1 1 201.0 0.0 2.35 13.8 135.4 0.0 4,-1 0.9045 2 14.758 MINOR ENSMUSG00000048915 Efna5 ENSMUST00000076840 ENSMUSP00000076115 TRANSLATION protein_coding - CCDS28935.1 1 228.0 0.0 2.65 15.9 135.4 0.0 4,-1 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000090897 Gm44501 ENSMUST00000232739 ENSMUSP00000156700 TRANSLATION nonsense_mediated_decay,RT - - - 65.0 0.0 0.0 0.0 29.8 0.0 -3,-7 0.6893 - -2.0 PRINCIPAL:1 ENSMUSG00000094168 Gm21903 ENSMUST00000178039 ENSMUSP00000136394 TRANSLATION protein_coding start/stop - 5 30.0 0.0 0.0 0.0 24.0 0.0 2,-3 0.7209 - -2.0 PRINCIPAL:1 ENSMUSG00000024403 Atp6v1g2 ENSMUST00000118384 ENSMUSP00000113511 TRANSLATION protein_coding - - 2 93.0 0.0 2.25 0.0 82.8 0.0 -4,-6 0.0171 4 8.064 MINOR ENSMUSG00000024403 Atp6v1g2 ENSMUST00000068261 ENSMUSP00000069482 TRANSLATION protein_coding - CCDS37597.1 1 118.0 0.0 3.0 36.9 123.4 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000024403 Atp6v1g2 ENSMUST00000143289 - NO_TRANSLATION retained_intron ENSMUSG00000024403 Atp6v1g2 ENSMUST00000142415 - NO_TRANSLATION retained_intron ENSMUSG00000024403 Atp6v1g2 ENSMUST00000146711 - NO_TRANSLATION retained_intron ENSMUSG00000024403 Atp6v1g2 ENSMUST00000130992 ENSMUSP00000134733 TRANSLATION protein_coding - CCDS84301.1 2 77.0 0.0 1.75 4.3 60.1 0.0 -4,-5 0.0468 3 6.068 MINOR ENSMUSG00000038880 Mrps34 ENSMUST00000043907 ENSMUSP00000045111 TRANSLATION protein_coding - CCDS28502.1 1 218.0 0.0 2.5 23.4 163.7 0.0 -4,0 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000038880 Mrps34 ENSMUST00000154236 ENSMUSP00000120985 TRANSLATION nonsense_mediated_decay - CCDS28502.1 2 218.0 0.0 2.5 23.4 163.7 0.0 -4,0 1.0 - -2.0 MINOR ENSMUSG00000038880 Mrps34 ENSMUST00000138648 - NO_TRANSLATION retained_intron ENSMUSG00000037548 H2-DMb2 ENSMUST00000236519 ENSMUSP00000157952 TRANSLATION protein_coding - - - 130.0 0.0 2.0 0.0 79.6 1.0 -4,-7 0.0024 - 2.4 MINOR ENSMUSG00000037548 H2-DMb2 ENSMUST00000171231 ENSMUSP00000126533 TRANSLATION protein_coding - - 1 130.0 0.0 2.0 0.0 79.6 1.0 -4,-7 0.0024 - 2.4 MINOR ENSMUSG00000037548 H2-DMb2 ENSMUST00000041982 ENSMUSP00000043526 TRANSLATION protein_coding - CCDS37580.1 1 261.0 0.0 3.8 1.2 180.8 1.0 2,-3 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000117145 Gng5c ENSMUST00000233003 ENSMUSP00000156831 TRANSLATION protein_coding - - - 68.0 0.0 1.0 34.2 47.6 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024422 Dhx16 ENSMUST00000172730 - NO_TRANSLATION retained_intron ENSMUSG00000024422 Dhx16 ENSMUST00000174449 - NO_TRANSLATION retained_intron ENSMUSG00000024422 Dhx16 ENSMUST00000173596 - NO_TRANSLATION retained_intron ENSMUSG00000024422 Dhx16 ENSMUST00000174330 - NO_TRANSLATION retained_intron ENSMUSG00000024422 Dhx16 ENSMUST00000173967 ENSMUSP00000133818 TRANSLATION protein_coding start - 3 123.0 0.0 2.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024422 Dhx16 ENSMUST00000174366 ENSMUSP00000133888 TRANSLATION nonsense_mediated_decay - - 2 741.0 10.0 6.4 0.0 29.5 0.0 -4,-5 0.0044 14 -2.0 MINOR ENSMUSG00000024422 Dhx16 ENSMUST00000025292 ENSMUSP00000025292 TRANSLATION protein_coding - CCDS28710.1 1 1044.0 10.0 15.33 10.4 215.3 0.0 -4,-5 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000024422 Dhx16 ENSMUST00000174308 - NO_TRANSLATION retained_intron ENSMUSG00000024054 Smchd1 ENSMUST00000232914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024054 Smchd1 ENSMUST00000182747 - NO_TRANSLATION retained_intron ENSMUSG00000024054 Smchd1 ENSMUST00000136071 - NO_TRANSLATION retained_intron ENSMUSG00000024054 Smchd1 ENSMUST00000183046 - NO_TRANSLATION retained_intron ENSMUSG00000024054 Smchd1 ENSMUST00000138193 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024054 Smchd1 ENSMUST00000182049 - NO_TRANSLATION retained_intron ENSMUSG00000024054 Smchd1 ENSMUST00000233839 ENSMUSP00000156815 TRANSLATION nonsense_mediated_decay start - - 119.0 0.0 2.75 0.0 42.6 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024054 Smchd1 ENSMUST00000127430 ENSMUSP00000121835 TRANSLATION protein_coding - CCDS28958.2 5 2007.0 0.0 12.685 0.3 97.4 0.0 -4,-5 1.0 56 12.0 PRINCIPAL:1 ENSMUSG00000024054 Smchd1 ENSMUST00000233872 ENSMUSP00000156880 TRANSLATION nonsense_mediated_decay start - - 87.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024054 Smchd1 ENSMUST00000182205 - NO_TRANSLATION retained_intron ENSMUSG00000024054 Smchd1 ENSMUST00000147111 - NO_TRANSLATION retained_intron ENSMUSG00000024054 Smchd1 ENSMUST00000182107 - NO_TRANSLATION retained_intron ENSMUSG00000002658 Gtf2f1 ENSMUST00000002733 ENSMUSP00000002733 TRANSLATION protein_coding - CCDS37667.1 1 508.0 0.0 4.65 7.5 655.8 0.0 -4,-7 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000011589 Fsd1 ENSMUST00000233361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011589 Fsd1 ENSMUST00000233973 - NO_TRANSLATION retained_intron ENSMUSG00000011589 Fsd1 ENSMUST00000232915 - NO_TRANSLATION retained_intron ENSMUSG00000011589 Fsd1 ENSMUST00000233149 - NO_TRANSLATION retained_intron ENSMUSG00000011589 Fsd1 ENSMUST00000233772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011589 Fsd1 ENSMUST00000011733 ENSMUSP00000011733 TRANSLATION protein_coding - CCDS37661.1 1 496.0 0.0 2.36 27.3 65.4 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000036026 Tmem63b ENSMUST00000113523 ENSMUSP00000109151 TRANSLATION protein_coding - CCDS28814.1 1 832.0 0.0 5.024 9.8 344.3 10.0 -2,-4 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000036026 Tmem63b ENSMUST00000156254 ENSMUSP00000118838 TRANSLATION protein_coding stop - 5 264.0 0.0 1.382 0.0 0.0 5.0 -2,-4 0.0039 4 -2.0 MINOR ENSMUSG00000036026 Tmem63b ENSMUST00000143907 ENSMUSP00000120579 TRANSLATION protein_coding stop - 2 92.0 0.0 0.0 0.0 0.0 1.0 -2,-4 0.0 1 -2.0 MINOR ENSMUSG00000036026 Tmem63b ENSMUST00000131089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036026 Tmem63b ENSMUST00000133741 ENSMUSP00000115408 TRANSLATION protein_coding stop - 3 218.0 0.0 1.433 0.0 0.0 5.0 -2,-5 0.0024 1 -2.0 MINOR ENSMUSG00000036026 Tmem63b ENSMUST00000127065 ENSMUSP00000118826 TRANSLATION protein_coding stop - 5 200.0 0.0 1.0 0.0 0.0 3.0 -2,-4 0.0002 2 -2.0 MINOR ENSMUSG00000036026 Tmem63b ENSMUST00000151439 - NO_TRANSLATION retained_intron ENSMUSG00000036026 Tmem63b ENSMUST00000129177 - NO_TRANSLATION retained_intron ENSMUSG00000036026 Tmem63b ENSMUST00000145873 ENSMUSP00000121681 TRANSLATION protein_coding stop - 5 309.0 0.0 2.122 0.0 47.3 5.0 -2,-5 0.0047 5 -2.0 MINOR ENSMUSG00000094690 1600014C23Rik ENSMUST00000233108 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094690 1600014C23Rik ENSMUST00000178179 ENSMUSP00000136788 TRANSLATION protein_coding - CCDS57097.1 1 101.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.8367 - 0.0 PRINCIPAL:1 ENSMUSG00000001227 Sema6b ENSMUST00000167545 ENSMUSP00000130985 TRANSLATION protein_coding - CCDS28896.1 1 886.0 0.0 10.705 2.0 421.1 1.0 4,-1 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000001227 Sema6b ENSMUST00000001256 ENSMUSP00000001256 TRANSLATION protein_coding - CCDS28896.1 1 886.0 0.0 10.705 2.0 421.1 1.0 4,-1 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000024462 Gabbr1 ENSMUST00000174826 - NO_TRANSLATION retained_intron ENSMUSG00000024462 Gabbr1 ENSMUST00000172792 ENSMUSP00000134268 TRANSLATION protein_coding - - 1 844.0 0.0 16.9 1.7 422.5 8.0 3,-1 0.1119 15 4.766 MINOR ENSMUSG00000024462 Gabbr1 ENSMUST00000172789 ENSMUSP00000134580 TRANSLATION protein_coding - - 1 229.0 0.0 2.432 0.0 50.4 0.0 3,-2 0.0 3 0.0 MINOR ENSMUSG00000024462 Gabbr1 ENSMUST00000174347 ENSMUSP00000134346 TRANSLATION protein_coding stop - 5 213.0 0.0 4.7 0.0 83.6 0.0 3,-1 0.0 4 -2.0 MINOR ENSMUSG00000024462 Gabbr1 ENSMUST00000174456 ENSMUSP00000134409 TRANSLATION protein_coding - - 1 229.0 0.0 2.432 0.0 50.4 0.0 3,-2 0.0 3 0.0 MINOR ENSMUSG00000024462 Gabbr1 ENSMUST00000174071 - NO_TRANSLATION retained_intron ENSMUSG00000024462 Gabbr1 ENSMUST00000173564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024462 Gabbr1 ENSMUST00000174181 - NO_TRANSLATION retained_intron ENSMUSG00000024462 Gabbr1 ENSMUST00000025338 ENSMUSP00000025338 TRANSLATION protein_coding - CCDS37616.1 1 960.0 0.0 19.264 5.0 470.1 8.0 3,-2 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000024462 Gabbr1 ENSMUST00000174866 - NO_TRANSLATION retained_intron ENSMUSG00000024462 Gabbr1 ENSMUST00000173823 ENSMUSP00000133797 TRANSLATION nonsense_mediated_decay - - 1 177.0 0.0 1.3 0.0 17.8 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000024142 Mlst8 ENSMUST00000070888 ENSMUSP00000065004 TRANSLATION protein_coding - CCDS28484.1 1 326.0 0.0 7.91 33.9 96.7 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000024142 Mlst8 ENSMUST00000234032 - NO_TRANSLATION retained_intron ENSMUSG00000024142 Mlst8 ENSMUST00000234892 - NO_TRANSLATION retained_intron ENSMUSG00000024142 Mlst8 ENSMUST00000234686 ENSMUSP00000157137 TRANSLATION protein_coding - CCDS28484.1 - 326.0 0.0 7.91 33.9 96.7 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000024142 Mlst8 ENSMUST00000234543 ENSMUSP00000157225 TRANSLATION protein_coding - - - 260.0 0.0 6.08 3.2 83.4 0.0 -4,-5 0.0706 7 7.78 MINOR ENSMUSG00000024142 Mlst8 ENSMUST00000179163 ENSMUSP00000136287 TRANSLATION protein_coding - CCDS28484.1 1 326.0 0.0 7.91 33.9 96.7 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000024142 Mlst8 ENSMUST00000234941 ENSMUSP00000157107 TRANSLATION protein_coding - - - 271.0 0.0 6.41 1.1 83.4 0.0 -4,-5 0.0498 7 8.184 MINOR ENSMUSG00000024142 Mlst8 ENSMUST00000234516 ENSMUSP00000157327 TRANSLATION nonsense_mediated_decay - - - 56.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024142 Mlst8 ENSMUST00000234335 ENSMUSP00000157301 TRANSLATION protein_coding - CCDS28484.1 - 326.0 0.0 7.91 33.9 96.7 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000024142 Mlst8 ENSMUST00000234147 ENSMUSP00000157174 TRANSLATION protein_coding stop - - 238.0 0.0 5.08 0.0 69.7 0.0 -4,-5 0.0031 5 -2.0 MINOR ENSMUSG00000036473 Tbc1d24 ENSMUST00000040474 ENSMUSP00000036458 TRANSLATION protein_coding - CCDS28477.1 1 555.0 0.0 3.35 10.5 192.5 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000036473 Tbc1d24 ENSMUST00000201301 ENSMUSP00000143949 TRANSLATION protein_coding - CCDS50012.1 5 561.0 0.0 3.35 10.5 192.5 0.0 -4,-5 0.9711 14 11.0 ALTERNATIVE:1 ENSMUSG00000036473 Tbc1d24 ENSMUST00000097376 ENSMUSP00000094989 TRANSLATION protein_coding - CCDS50012.1 1 561.0 0.0 3.35 10.5 192.5 0.0 -4,-5 0.9711 14 11.0 ALTERNATIVE:1 ENSMUSG00000036473 Tbc1d24 ENSMUST00000167791 ENSMUSP00000127005 TRANSLATION protein_coding - CCDS50012.1 1 561.0 0.0 3.35 10.5 192.5 0.0 -4,-5 0.9711 14 11.0 ALTERNATIVE:1 ENSMUSG00000036473 Tbc1d24 ENSMUST00000168378 ENSMUSP00000126107 TRANSLATION protein_coding - CCDS28477.1 1 555.0 0.0 3.35 10.5 192.5 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000036473 Tbc1d24 ENSMUST00000202018 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036473 Tbc1d24 ENSMUST00000201583 ENSMUSP00000144097 TRANSLATION protein_coding - - 5 182.0 0.0 2.05 0.0 58.3 0.0 -3,-4 0.0 4 3.402 MINOR ENSMUSG00000036473 Tbc1d24 ENSMUST00000201716 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036473 Tbc1d24 ENSMUST00000171189 ENSMUSP00000128001 TRANSLATION protein_coding - CCDS28477.1 1 555.0 0.0 3.35 10.5 192.5 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000036473 Tbc1d24 ENSMUST00000201359 ENSMUSP00000144026 TRANSLATION nonsense_mediated_decay - - 1 325.0 0.0 0.4 0.0 105.8 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000036473 Tbc1d24 ENSMUST00000201960 ENSMUSP00000144208 TRANSLATION protein_coding - CCDS28477.1 5 555.0 0.0 3.35 10.5 192.5 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000036473 Tbc1d24 ENSMUST00000201805 ENSMUSP00000143883 TRANSLATION protein_coding - CCDS50012.1 1 561.0 0.0 3.35 10.5 192.5 0.0 -4,-5 0.9711 14 11.0 ALTERNATIVE:1 ENSMUSG00000036473 Tbc1d24 ENSMUST00000201089 ENSMUSP00000144250 TRANSLATION protein_coding - CCDS28477.1 1 555.0 0.0 3.35 10.5 192.5 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000036473 Tbc1d24 ENSMUST00000168410 ENSMUSP00000128868 TRANSLATION protein_coding - CCDS28477.1 1 555.0 0.0 3.35 10.5 192.5 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000036473 Tbc1d24 ENSMUST00000202925 ENSMUSP00000144575 TRANSLATION protein_coding - CCDS28477.1 5 555.0 0.0 3.35 10.5 192.5 0.0 -4,-5 1.0 14 11.0 PRINCIPAL:4 ENSMUSG00000024087 Cyp1b1 ENSMUST00000234927 ENSMUSP00000157101 TRANSLATION nonsense_mediated_decay start - - 289.0 26.0 2.45 0.0 206.9 0.0 -4,-5 0.0006 6 -2.0 MINOR ENSMUSG00000024087 Cyp1b1 ENSMUST00000024894 ENSMUSP00000024894 TRANSLATION protein_coding - CCDS28986.1 1 543.0 32.0 3.8 9.5 333.1 1.0 -2,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000024087 Cyp1b1 ENSMUST00000234361 ENSMUSP00000157049 TRANSLATION protein_coding - - - 487.0 32.0 3.0 0.0 310.9 1.0 -2,-5 0.0075 9 15.066 MINOR ENSMUSG00000024155 Meiob ENSMUST00000234455 ENSMUSP00000157038 TRANSLATION nonsense_mediated_decay - - - 344.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0389 - -2.0 MINOR ENSMUSG00000024155 Meiob ENSMUST00000234372 ENSMUSP00000157100 TRANSLATION protein_coding - - - 426.0 3.0 0.0 0.0 0.0 0.0 -4,-6 0.0321 - 3.0 MINOR ENSMUSG00000024155 Meiob ENSMUST00000024972 ENSMUSP00000024972 TRANSLATION protein_coding - CCDS50020.1 5 470.0 3.0 0.0 9.3 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044857 Lemd2 ENSMUST00000236101 - NO_TRANSLATION retained_intron ENSMUSG00000044857 Lemd2 ENSMUST00000236055 - NO_TRANSLATION retained_intron ENSMUSG00000044857 Lemd2 ENSMUST00000055117 ENSMUSP00000058221 TRANSLATION protein_coding - CCDS50043.1 1 511.0 0.0 6.33 0.1 56.1 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000044857 Lemd2 ENSMUST00000237625 - NO_TRANSLATION retained_intron ENSMUSG00000044857 Lemd2 ENSMUST00000236082 - NO_TRANSLATION retained_intron ENSMUSG00000044857 Lemd2 ENSMUST00000237257 ENSMUSP00000158443 TRANSLATION protein_coding start - - 125.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000044857 Lemd2 ENSMUST00000236492 - NO_TRANSLATION retained_intron ENSMUSG00000116895 Ermardl1 ENSMUST00000097395 ENSMUSP00000095007 TRANSLATION protein_coding - CCDS49962.1 5 438.0 0.0 0.0 0.0 83.6 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000116895 Ermardl1 ENSMUST00000232446 ENSMUSP00000156195 TRANSLATION protein_coding - - - 202.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 - 0.0 MINOR ENSMUSG00000003199 Mpnd ENSMUST00000133998 ENSMUSP00000122480 TRANSLATION protein_coding stop - 3 171.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000003199 Mpnd ENSMUST00000149441 ENSMUSP00000119745 TRANSLATION protein_coding - CCDS50150.1 1 487.0 3.0 1.525 0.4 35.3 0.0 -4,-5 0.9423 4 10.46 PRINCIPAL:2 ENSMUSG00000003199 Mpnd ENSMUST00000159340 ENSMUSP00000125555 TRANSLATION protein_coding start - 5 455.0 0.0 0.925 0.0 0.0 0.0 -4,-5 0.0014 4 -2.0 MINOR ENSMUSG00000003199 Mpnd ENSMUST00000124302 - NO_TRANSLATION retained_intron ENSMUSG00000003199 Mpnd ENSMUST00000153197 ENSMUSP00000125535 TRANSLATION protein_coding start/stop - 3 289.0 3.0 1.675 0.0 32.1 0.0 -4,-6 0.0425 1 -2.0 MINOR ENSMUSG00000003199 Mpnd ENSMUST00000159996 ENSMUSP00000124644 TRANSLATION protein_coding - - 5 457.0 3.0 1.525 0.0 35.3 0.0 -4,-5 0.0493 4 10.46 ALTERNATIVE:2 ENSMUSG00000003199 Mpnd ENSMUST00000159420 - NO_TRANSLATION retained_intron ENSMUSG00000003199 Mpnd ENSMUST00000162883 ENSMUSP00000124128 TRANSLATION protein_coding - - 5 437.0 3.0 1.075 0.0 24.9 0.0 -4,-5 0.0053 3 6.852 MINOR ENSMUSG00000003199 Mpnd ENSMUST00000140926 - NO_TRANSLATION retained_intron ENSMUSG00000117136 Gm49835 ENSMUST00000232764 ENSMUSP00000156616 TRANSLATION protein_coding - - - 86.0 0.0 0.0 0.0 92.3 0.0 1,-3 0.7309 - 6.0 PRINCIPAL:1 ENSMUSG00000056133 Unc93a2 ENSMUST00000231922 ENSMUSP00000156194 TRANSLATION nonsense_mediated_decay - - - 176.0 0.0 0.866 0.0 22.3 2.0 -1,-4 0.0017 - -2.0 MINOR ENSMUSG00000056133 Unc93a2 ENSMUST00000070059 ENSMUSP00000064469 TRANSLATION protein_coding - CCDS49942.1 1 458.0 0.0 2.312 9.3 47.6 10.0 -1,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024190 Dusp1 ENSMUST00000025025 ENSMUSP00000025025 TRANSLATION protein_coding - CCDS28552.1 1 367.0 8.0 3.15 22.4 198.4 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000024190 Dusp1 ENSMUST00000235532 ENSMUSP00000157700 TRANSLATION protein_coding - - - 276.0 8.0 2.75 0.0 162.9 0.0 -4,-7 0.0003 - 15.072 MINOR ENSMUSG00000024190 Dusp1 ENSMUST00000236661 ENSMUSP00000157446 TRANSLATION protein_coding - - - 174.0 8.0 2.0 0.0 151.5 0.0 -4,-6 0.0 - 12.888 MINOR ENSMUSG00000024190 Dusp1 ENSMUST00000146077 - NO_TRANSLATION retained_intron ENSMUSG00000024190 Dusp1 ENSMUST00000126178 - NO_TRANSLATION retained_intron ENSMUSG00000024190 Dusp1 ENSMUST00000011196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023990 Tfeb ENSMUST00000160373 ENSMUSP00000124708 TRANSLATION protein_coding stop - 5 77.0 0.0 0.0 0.0 95.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000023990 Tfeb ENSMUST00000024786 ENSMUSP00000024786 TRANSLATION protein_coding - CCDS28856.1 1 534.0 0.0 2.25 0.0 409.5 0.0 -4,-5 0.2003 2 12.0 MINOR ENSMUSG00000023990 Tfeb ENSMUST00000141631 ENSMUSP00000118057 TRANSLATION protein_coding stop - 3 103.0 0.0 0.0 0.0 148.8 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000023990 Tfeb ENSMUST00000159641 ENSMUSP00000124379 TRANSLATION protein_coding stop - 5 78.0 0.0 0.0 0.0 98.5 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000023990 Tfeb ENSMUST00000162719 - NO_TRANSLATION retained_intron ENSMUSG00000023990 Tfeb ENSMUST00000086932 ENSMUSP00000084151 TRANSLATION protein_coding - CCDS50133.1 1 475.0 0.0 2.25 11.0 409.5 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000023990 Tfeb ENSMUST00000137845 ENSMUSP00000119508 TRANSLATION protein_coding stop - 5 32.0 0.0 0.0 0.0 35.9 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000023990 Tfeb ENSMUST00000130208 ENSMUSP00000122228 TRANSLATION protein_coding stop - 3 76.0 0.0 0.0 0.0 92.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000023990 Tfeb ENSMUST00000125177 ENSMUSP00000121888 TRANSLATION protein_coding stop - 1 105.0 0.0 0.0 0.0 77.3 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000023990 Tfeb ENSMUST00000113288 ENSMUSP00000108913 TRANSLATION protein_coding - CCDS50133.1 1 475.0 0.0 2.25 11.0 409.5 0.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000023990 Tfeb ENSMUST00000124765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023990 Tfeb ENSMUST00000140715 - NO_TRANSLATION retained_intron ENSMUSG00000023990 Tfeb ENSMUST00000146782 ENSMUSP00000120311 TRANSLATION protein_coding start - 5 334.0 0.0 2.25 0.0 184.1 0.0 -4,-5 0.0184 1 -2.0 MINOR ENSMUSG00000023990 Tfeb ENSMUST00000113284 ENSMUSP00000108909 TRANSLATION protein_coding - - 5 267.0 0.0 1.25 0.0 259.1 0.0 -4,-7 0.0 1 3.336 MINOR ENSMUSG00000023990 Tfeb ENSMUST00000126258 ENSMUSP00000119442 TRANSLATION protein_coding stop - 5 32.0 0.0 0.0 0.0 35.9 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000008668 Rps18 ENSMUST00000234380 ENSMUSP00000157085 TRANSLATION nonsense_mediated_decay - - - 38.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000008668 Rps18 ENSMUST00000174662 - NO_TRANSLATION retained_intron ENSMUSG00000008668 Rps18 ENSMUST00000172550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008668 Rps18 ENSMUST00000174609 ENSMUSP00000138296 TRANSLATION protein_coding - - 2 107.0 0.0 2.264 0.0 109.6 0.0 -4,-6 0.0 - 3.942 MINOR ENSMUSG00000008668 Rps18 ENSMUST00000008812 ENSMUSP00000008812 TRANSLATION protein_coding - CCDS37573.1 1 152.0 0.0 3.91 26.7 189.0 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000008668 Rps18 ENSMUST00000174620 - NO_TRANSLATION retained_intron ENSMUSG00000008668 Rps18 ENSMUST00000174758 - NO_TRANSLATION retained_intron ENSMUSG00000008668 Rps18 ENSMUST00000174175 - NO_TRANSLATION retained_intron ENSMUSG00000008668 Rps18 ENSMUST00000173323 - NO_TRANSLATION retained_intron ENSMUSG00000008668 Rps18 ENSMUST00000174745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008668 Rps18 ENSMUST00000172799 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019214 Chtf18 ENSMUST00000169767 ENSMUSP00000129694 TRANSLATION protein_coding start - 5 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019214 Chtf18 ENSMUST00000168914 - NO_TRANSLATION retained_intron ENSMUSG00000019214 Chtf18 ENSMUST00000170575 ENSMUSP00000131366 TRANSLATION nonsense_mediated_decay - - 2 365.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0018 5 -2.0 MINOR ENSMUSG00000019214 Chtf18 ENSMUST00000168060 - NO_TRANSLATION retained_intron ENSMUSG00000019214 Chtf18 ENSMUST00000237158 - NO_TRANSLATION retained_intron ENSMUSG00000019214 Chtf18 ENSMUST00000170070 ENSMUSP00000131768 TRANSLATION protein_coding - - 2 970.0 12.0 2.5 0.4 44.6 0.0 -4,-5 0.6966 16 12.0 ALTERNATIVE:2 ENSMUSG00000019214 Chtf18 ENSMUST00000048054 ENSMUSP00000043896 TRANSLATION protein_coding - CCDS28523.1 1 969.0 12.0 2.5 0.4 44.6 0.0 -4,-5 1.0 16 12.0 PRINCIPAL:2 ENSMUSG00000019214 Chtf18 ENSMUST00000167940 ENSMUSP00000131349 TRANSLATION protein_coding start - 3 130.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0031 1 -2.0 MINOR ENSMUSG00000023909 Paqr4 ENSMUST00000233776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023909 Paqr4 ENSMUST00000024702 ENSMUSP00000024702 TRANSLATION protein_coding - CCDS28461.1 1 273.0 0.0 3.0 0.0 85.1 0.0 -4,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000068039 Tcp1 ENSMUST00000137289 - NO_TRANSLATION retained_intron ENSMUSG00000068039 Tcp1 ENSMUST00000089024 ENSMUSP00000086418 TRANSLATION protein_coding - CCDS70760.1 1 507.0 19.0 10.0 0.0 472.6 0.0 -4,-5 0.0097 25 9.918 MINOR ENSMUSG00000068039 Tcp1 ENSMUST00000147724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068039 Tcp1 ENSMUST00000133003 - NO_TRANSLATION retained_intron ENSMUSG00000068039 Tcp1 ENSMUST00000134665 - NO_TRANSLATION retained_intron ENSMUSG00000068039 Tcp1 ENSMUST00000151287 ENSMUSP00000116108 TRANSLATION protein_coding - CCDS28397.1 1 556.0 23.0 11.5 34.9 512.9 0.0 -4,-6 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000068039 Tcp1 ENSMUST00000138709 - NO_TRANSLATION retained_intron ENSMUSG00000068039 Tcp1 ENSMUST00000233345 - NO_TRANSLATION retained_intron ENSMUSG00000068039 Tcp1 ENSMUST00000143961 ENSMUSP00000116511 TRANSLATION protein_coding - - 2 103.0 10.0 2.698 0.0 104.1 0.0 -4,-6 0.0 5 0.0 MINOR ENSMUSG00000068039 Tcp1 ENSMUST00000151715 - NO_TRANSLATION retained_intron ENSMUSG00000068039 Tcp1 ENSMUST00000129632 - NO_TRANSLATION retained_intron ENSMUSG00000068039 Tcp1 ENSMUST00000233286 ENSMUSP00000156966 TRANSLATION protein_coding - - - 54.0 6.0 1.198 0.0 65.4 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000055760 Gemin6 ENSMUST00000156869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055760 Gemin6 ENSMUST00000069486 ENSMUSP00000063554 TRANSLATION protein_coding - CCDS28989.1 1 166.0 0.0 1.6 19.3 325.2 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000024124 Prss30 ENSMUST00000147626 ENSMUSP00000118063 TRANSLATION protein_coding stop - 5 61.0 1.0 0.198 0.0 0.0 0.0 4,-3 0.0043 - -2.0 MINOR ENSMUSG00000024124 Prss30 ENSMUST00000234145 - NO_TRANSLATION retained_intron ENSMUSG00000024124 Prss30 ENSMUST00000024936 ENSMUSP00000024936 TRANSLATION protein_coding - CCDS28470.1 1 310.0 7.0 5.178 0.1 231.8 0.0 4,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000024124 Prss30 ENSMUST00000234765 ENSMUSP00000157077 TRANSLATION protein_coding - CCDS28470.1 - 310.0 7.0 5.178 0.1 231.8 0.0 4,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000024124 Prss30 ENSMUST00000151448 ENSMUSP00000117647 TRANSLATION nonsense_mediated_decay - - 3 213.0 4.0 3.448 0.0 119.4 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024124 Prss30 ENSMUST00000135549 ENSMUSP00000114293 TRANSLATION protein_coding stop - 5 272.0 7.0 4.578 0.0 185.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000024124 Prss30 ENSMUST00000123584 - NO_TRANSLATION retained_intron ENSMUSG00000036036 Zfp57 ENSMUST00000172527 ENSMUSP00000134116 TRANSLATION protein_coding stop - 5 62.0 0.0 1.58 0.0 72.8 0.0 -4,-7 0.0007 - -2.0 MINOR ENSMUSG00000036036 Zfp57 ENSMUST00000172540 ENSMUSP00000134024 TRANSLATION protein_coding stop - 2 150.0 7.0 1.88 0.0 72.8 0.0 -4,-6 0.0007 - -2.0 MINOR ENSMUSG00000036036 Zfp57 ENSMUST00000174672 ENSMUSP00000133821 TRANSLATION protein_coding - CCDS28733.1 1 421.0 20.0 3.06 0.0 117.9 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000036036 Zfp57 ENSMUST00000172502 - NO_TRANSLATION retained_intron ENSMUSG00000036036 Zfp57 ENSMUST00000089968 ENSMUSP00000087414 TRANSLATION protein_coding - CCDS50106.1 1 418.0 20.0 3.06 0.0 117.9 0.0 -4,-6 0.4259 - 14.0 ALTERNATIVE:2 ENSMUSG00000036036 Zfp57 ENSMUST00000174747 ENSMUSP00000133460 TRANSLATION protein_coding stop - 5 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036036 Zfp57 ENSMUST00000174470 - NO_TRANSLATION retained_intron ENSMUSG00000036036 Zfp57 ENSMUST00000174016 - NO_TRANSLATION retained_intron ENSMUSG00000036036 Zfp57 ENSMUST00000069250 ENSMUSP00000065811 TRANSLATION protein_coding - CCDS28733.1 1 421.0 20.0 3.06 0.0 117.9 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000036036 Zfp57 ENSMUST00000173921 ENSMUSP00000133582 TRANSLATION protein_coding stop - 5 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036036 Zfp57 ENSMUST00000173588 ENSMUSP00000135655 TRANSLATION protein_coding stop - 3 146.0 12.0 2.21 0.0 44.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036036 Zfp57 ENSMUST00000174524 ENSMUSP00000134418 TRANSLATION protein_coding - CCDS28733.1 1 421.0 20.0 3.06 0.0 117.9 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000036036 Zfp57 ENSMUST00000172580 ENSMUSP00000133894 TRANSLATION protein_coding stop - 3 160.0 9.0 2.21 0.0 94.4 0.0 -4,-6 0.0025 - -2.0 MINOR ENSMUSG00000024044 Epb41l3 ENSMUST00000238898 ENSMUSP00000158929 TRANSLATION protein_coding - - - 1052.0 0.0 4.58 0.0 467.5 0.0 -4,-5 0.0288 32 1.0 MINOR ENSMUSG00000024044 Epb41l3 ENSMUST00000225316 - NO_TRANSLATION retained_intron ENSMUSG00000024044 Epb41l3 ENSMUST00000223610 ENSMUSP00000153195 TRANSLATION protein_coding stop - - 53.0 0.0 1.58 0.0 56.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024044 Epb41l3 ENSMUST00000225209 - NO_TRANSLATION retained_intron ENSMUSG00000024044 Epb41l3 ENSMUST00000225062 ENSMUSP00000153146 TRANSLATION protein_coding stop - - 29.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024044 Epb41l3 ENSMUST00000112680 ENSMUSP00000108300 TRANSLATION protein_coding - - 5 939.0 0.0 7.74 0.0 563.5 0.0 -4,-5 0.278 30 8.0 ALTERNATIVE:2 ENSMUSG00000024044 Epb41l3 ENSMUST00000223565 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024044 Epb41l3 ENSMUST00000232706 ENSMUSP00000156921 TRANSLATION protein_coding - - - 812.0 0.0 7.74 0.1 474.9 0.0 -4,-5 0.207 26 7.4 MINOR ENSMUSG00000024044 Epb41l3 ENSMUST00000080208 ENSMUSP00000079098 TRANSLATION protein_coding - CCDS28952.1 1 929.0 0.0 7.74 0.1 561.9 0.0 -4,-5 1.0 31 8.0 PRINCIPAL:2 ENSMUSG00000024044 Epb41l3 ENSMUST00000233964 ENSMUSP00000156827 TRANSLATION protein_coding start - - 819.0 0.0 7.74 0.0 503.8 0.0 -4,-5 0.1801 28 -2.0 MINOR ENSMUSG00000024044 Epb41l3 ENSMUST00000224951 ENSMUSP00000153190 TRANSLATION protein_coding start/stop - - 262.0 0.0 0.0 0.0 87.8 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000024044 Epb41l3 ENSMUST00000223703 ENSMUSP00000153611 TRANSLATION protein_coding start - - 852.0 0.0 5.16 0.0 427.2 0.0 -4,-5 0.0148 24 -2.0 MINOR ENSMUSG00000024044 Epb41l3 ENSMUST00000225695 ENSMUSP00000153138 TRANSLATION protein_coding start/stop - - 223.0 0.0 0.0 0.0 22.6 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000024044 Epb41l3 ENSMUST00000225977 ENSMUSP00000153228 TRANSLATION protein_coding - - - 876.0 0.0 7.74 0.1 562.2 0.0 -4,-5 0.1565 30 8.0 ALTERNATIVE:2 ENSMUSG00000024044 Epb41l3 ENSMUST00000233509 ENSMUSP00000156566 TRANSLATION protein_coding - - - 911.0 0.0 7.74 0.1 561.9 0.0 -4,-5 0.2218 30 8.0 ALTERNATIVE:2 ENSMUSG00000024044 Epb41l3 ENSMUST00000223816 - NO_TRANSLATION retained_intron ENSMUSG00000024044 Epb41l3 ENSMUST00000225604 - NO_TRANSLATION retained_intron ENSMUSG00000024044 Epb41l3 ENSMUST00000239167 ENSMUSP00000158911 TRANSLATION protein_coding - - - 951.0 0.0 7.74 0.0 561.9 0.0 -3,-4 0.2333 31 8.0 ALTERNATIVE:2 ENSMUSG00000024044 Epb41l3 ENSMUST00000225740 ENSMUSP00000153198 TRANSLATION nonsense_mediated_decay - - - 287.0 0.0 3.91 0.0 114.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000024044 Epb41l3 ENSMUST00000224523 ENSMUSP00000153133 TRANSLATION protein_coding start - - 605.0 0.0 3.5 0.0 417.1 0.0 -4,-5 0.0005 21 -2.0 MINOR ENSMUSG00000043807 Ly6g5b ENSMUST00000062657 ENSMUSP00000052133 TRANSLATION protein_coding - CCDS28683.1 1 194.0 0.0 1.83 2.9 0.0 0.0 3,-4 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000043807 Ly6g5b ENSMUST00000172854 ENSMUSP00000138033 TRANSLATION protein_coding - - 1 139.0 0.0 0.83 1.3 0.0 0.0 -4,-2 0.1437 1 2.882 MINOR ENSMUSG00000038048 Cntnap5c ENSMUST00000076038 ENSMUSP00000075416 TRANSLATION protein_coding - CCDS37671.1 2 1305.0 0.0 6.97 10.1 380.4 0.0 -1,-4 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000091945 Vmn2r114 ENSMUST00000168033 ENSMUSP00000127505 TRANSLATION protein_coding - CCDS50007.1 1 856.0 4.0 1.85 0.1 360.7 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000091945 Vmn2r114 ENSMUST00000234738 - NO_TRANSLATION retained_intron ENSMUSG00000091945 Vmn2r114 ENSMUST00000234051 ENSMUSP00000157104 TRANSLATION nonsense_mediated_decay - - - 577.0 0.0 0.69 0.0 104.3 0.0 4,-1 0.0006 - -2.0 MINOR ENSMUSG00000091945 Vmn2r114 ENSMUST00000234493 ENSMUSP00000157375 TRANSLATION nonsense_mediated_decay - - - 577.0 0.0 0.69 0.0 104.3 0.0 4,-1 0.0006 - -2.0 MINOR ENSMUSG00000079492 Gm11127 ENSMUST00000113742 ENSMUSP00000109371 TRANSLATION protein_coding - CCDS57078.1 1 374.0 0.0 4.0 0.0 322.1 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000029184 Or12d17 ENSMUST00000214668 ENSMUSP00000150326 TRANSLATION protein_coding - CCDS28752.1 5 314.0 0.0 1.0 11.8 182.6 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029184 Or12d17 ENSMUST00000214938 ENSMUSP00000150286 TRANSLATION protein_coding - CCDS28752.1 5 314.0 0.0 1.0 11.8 182.6 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029184 Or12d17 ENSMUST00000217602 ENSMUSP00000150044 TRANSLATION protein_coding - CCDS28752.1 5 314.0 0.0 1.0 11.8 182.6 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000029184 Or12d17 ENSMUST00000031086 ENSMUSP00000031086 TRANSLATION protein_coding - CCDS28752.1 - 314.0 0.0 1.0 11.8 182.6 7.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000092519 Actl9 ENSMUST00000174088 ENSMUSP00000134564 TRANSLATION protein_coding - CCDS57063.1 - 415.0 22.0 0.6 3.3 337.1 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000045316 Fahd1 ENSMUST00000049642 ENSMUSP00000055827 TRANSLATION protein_coding - CCDS37496.1 - 227.0 9.0 1.0 0.0 210.1 0.0 -4,-7 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000117148 Vmn1r229 ENSMUST00000232810 ENSMUSP00000156686 TRANSLATION protein_coding - CCDS28428.1 - 306.0 0.0 0.0 0.4 95.2 7.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000117148 Vmn1r229 ENSMUST00000232852 ENSMUSP00000156964 TRANSLATION protein_coding - CCDS28428.1 - 306.0 0.0 0.0 0.4 95.2 7.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000117148 Vmn1r229 ENSMUST00000233712 ENSMUSP00000156596 TRANSLATION protein_coding - CCDS28428.1 - 306.0 0.0 0.0 0.4 95.2 7.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000117148 Vmn1r229 ENSMUST00000076759 ENSMUSP00000076045 TRANSLATION protein_coding - CCDS28428.1 - 306.0 0.0 0.0 0.4 95.2 7.0 -2,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000117148 Vmn1r229 ENSMUST00000233490 - NO_TRANSLATION retained_intron ENSMUSG00000034673 Pbx2 ENSMUST00000173229 - NO_TRANSLATION retained_intron ENSMUSG00000034673 Pbx2 ENSMUST00000173328 ENSMUSP00000133766 TRANSLATION protein_coding - - 2 348.0 0.0 2.2 2.3 329.4 0.0 -4,-5 0.1346 4 9.138 MINOR ENSMUSG00000034673 Pbx2 ENSMUST00000174532 ENSMUSP00000133744 TRANSLATION protein_coding stop - 2 147.0 0.0 0.0 0.0 227.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034673 Pbx2 ENSMUST00000183827 ENSMUSP00000139079 TRANSLATION protein_coding - - 5 370.0 0.0 2.2 1.1 367.3 0.0 -4,-5 0.1209 4 11.018 MINOR ENSMUSG00000034673 Pbx2 ENSMUST00000038149 ENSMUSP00000040464 TRANSLATION protein_coding - CCDS28648.1 1 430.0 0.0 2.2 7.1 384.2 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000024217 Snrpc ENSMUST00000071006 ENSMUSP00000063976 TRANSLATION protein_coding - CCDS28570.1 1 159.0 4.0 2.1 30.9 79.8 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000024217 Snrpc ENSMUST00000233657 ENSMUSP00000156644 TRANSLATION protein_coding - - - 182.0 4.0 2.1 0.0 71.4 0.0 -4,-5 0.0242 3 15.37 MINOR ENSMUSG00000024217 Snrpc ENSMUST00000233752 ENSMUSP00000156747 TRANSLATION protein_coding - - - 157.0 2.0 1.6 0.0 34.6 0.0 -4,-5 0.0164 2 9.176 MINOR ENSMUSG00000024217 Snrpc ENSMUST00000137581 - NO_TRANSLATION retained_intron ENSMUSG00000024217 Snrpc ENSMUST00000232873 ENSMUSP00000156707 TRANSLATION protein_coding - CCDS28570.1 - 159.0 4.0 2.1 30.9 79.8 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000049618 Or12d13 ENSMUST00000173472 ENSMUSP00000134539 TRANSLATION protein_coding - CCDS28746.1 3 313.0 0.0 1.0 8.3 176.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049618 Or12d13 ENSMUST00000058826 ENSMUSP00000094934 TRANSLATION protein_coding - CCDS28746.1 - 313.0 0.0 1.0 8.3 176.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000007570 Fance ENSMUST00000124870 - NO_TRANSLATION retained_intron ENSMUSG00000007570 Fance ENSMUST00000140404 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007570 Fance ENSMUST00000233705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007570 Fance ENSMUST00000151312 - NO_TRANSLATION retained_intron ENSMUSG00000007570 Fance ENSMUST00000133527 ENSMUSP00000122226 TRANSLATION nonsense_mediated_decay - - 5 384.0 0.0 2.5 0.0 52.6 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000007570 Fance ENSMUST00000128079 - NO_TRANSLATION retained_intron ENSMUSG00000007570 Fance ENSMUST00000156569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007570 Fance ENSMUST00000146104 ENSMUSP00000114386 TRANSLATION nonsense_mediated_decay start - 3 151.0 0.0 2.3125 0.0 115.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007570 Fance ENSMUST00000141648 - NO_TRANSLATION retained_intron ENSMUSG00000007570 Fance ENSMUST00000114801 ENSMUSP00000110449 TRANSLATION protein_coding - - 1 462.0 0.0 6.53 0.0 178.8 0.0 -4,-7 0.017 1 5.718 MINOR ENSMUSG00000007570 Fance ENSMUST00000156505 ENSMUSP00000118622 TRANSLATION protein_coding start - 2 71.0 0.0 2.25 0.0 80.2 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000007570 Fance ENSMUST00000088007 ENSMUSP00000085322 TRANSLATION nonsense_mediated_decay - - 5 406.0 0.0 2.3125 0.0 115.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000007570 Fance ENSMUST00000233381 ENSMUSP00000156442 TRANSLATION nonsense_mediated_decay start - - 355.0 0.0 2.3125 0.0 115.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000007570 Fance ENSMUST00000114803 ENSMUSP00000110451 TRANSLATION protein_coding - - 1 526.0 0.0 6.6725 0.0 359.6 0.0 -4,-6 0.7749 1 12.0 PRINCIPAL:1 ENSMUSG00000007570 Fance ENSMUST00000114804 ENSMUSP00000110452 TRANSLATION protein_coding - - 1 484.0 0.0 6.3425 0.0 240.1 0.0 -4,-6 0.0091 1 5.34 MINOR ENSMUSG00000007570 Fance ENSMUST00000123248 ENSMUSP00000119663 TRANSLATION protein_coding start - 3 154.0 0.0 3.91 0.0 215.5 0.0 -2,2 0.0 - -2.0 MINOR ENSMUSG00000024088 4930583I09Rik ENSMUST00000232860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024088 4930583I09Rik ENSMUST00000024896 ENSMUSP00000024896 TRANSLATION protein_coding - CCDS84328.1 1 102.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.8367 - 0.0 PRINCIPAL:1 ENSMUSG00000024064 Galnt14 ENSMUST00000112591 ENSMUSP00000108210 TRANSLATION protein_coding - - 1 429.0 21.0 9.05 0.0 97.9 1.0 -1,-5 0.0049 4 9.9 MINOR ENSMUSG00000024064 Galnt14 ENSMUST00000146565 - NO_TRANSLATION retained_intron ENSMUSG00000024064 Galnt14 ENSMUST00000024858 ENSMUSP00000024858 TRANSLATION protein_coding - CCDS28965.1 1 550.0 21.0 10.65 21.8 179.6 1.0 -1,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000024064 Galnt14 ENSMUST00000233326 - NO_TRANSLATION retained_intron ENSMUSG00000024064 Galnt14 ENSMUST00000232785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024194 Cuta ENSMUST00000237609 - NO_TRANSLATION retained_intron ENSMUSG00000024194 Cuta ENSMUST00000236326 - NO_TRANSLATION retained_intron ENSMUSG00000024194 Cuta ENSMUST00000235442 - NO_TRANSLATION retained_intron ENSMUSG00000024194 Cuta ENSMUST00000114935 ENSMUSP00000110585 TRANSLATION protein_coding - CCDS37519.1 1 154.0 0.0 3.55 10.1 138.3 0.0 2,-4 1.0 3 11.0 PRINCIPAL:4 ENSMUSG00000024194 Cuta ENSMUST00000025027 ENSMUSP00000025027 TRANSLATION protein_coding - CCDS28557.1 1 177.0 0.0 3.55 9.2 138.3 0.0 0,-4 0.9038 3 10.703 ALTERNATIVE:1 ENSMUSG00000024194 Cuta ENSMUST00000236623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024194 Cuta ENSMUST00000236888 ENSMUSP00000158255 TRANSLATION nonsense_mediated_decay - - - 128.0 0.0 1.55 0.0 40.3 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000024194 Cuta ENSMUST00000236536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024194 Cuta ENSMUST00000235460 - NO_TRANSLATION retained_intron ENSMUSG00000024194 Cuta ENSMUST00000235341 - NO_TRANSLATION retained_intron ENSMUSG00000024194 Cuta ENSMUST00000236906 - NO_TRANSLATION retained_intron ENSMUSG00000024194 Cuta ENSMUST00000235951 - NO_TRANSLATION retained_intron ENSMUSG00000024194 Cuta ENSMUST00000236744 - NO_TRANSLATION retained_intron ENSMUSG00000024401 Tnf ENSMUST00000167924 ENSMUSP00000126122 TRANSLATION protein_coding - CCDS70801.1 1 219.0 0.0 1.9 0.9 130.8 1.0 -4,-6 0.141 - 10.752 MINOR ENSMUSG00000024401 Tnf ENSMUST00000025263 ENSMUSP00000025263 TRANSLATION protein_coding - CCDS28691.1 1 235.0 0.0 2.4 9.9 130.8 1.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043782 Bicdl2 ENSMUST00000062967 ENSMUSP00000053808 TRANSLATION protein_coding - CCDS28453.1 1 507.0 0.0 2.3 6.7 0.0 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000043782 Bicdl2 ENSMUST00000233930 - NO_TRANSLATION retained_intron ENSMUSG00000043782 Bicdl2 ENSMUST00000232760 ENSMUSP00000156752 TRANSLATION protein_coding - CCDS28453.1 - 507.0 0.0 2.3 6.7 0.0 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000043782 Bicdl2 ENSMUST00000233541 ENSMUSP00000156538 TRANSLATION protein_coding - - - 441.0 0.0 1.9 2.4 0.0 0.0 -4,-1 0.1947 6 5.448 MINOR ENSMUSG00000090966 Vmn2r116 ENSMUST00000234872 ENSMUSP00000157380 TRANSLATION nonsense_mediated_decay - - - 81.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000090966 Vmn2r116 ENSMUST00000235122 - NO_TRANSLATION retained_intron ENSMUSG00000090966 Vmn2r116 ENSMUST00000234193 - NO_TRANSLATION retained_intron ENSMUSG00000090966 Vmn2r116 ENSMUST00000234010 ENSMUSP00000157271 TRANSLATION protein_coding - - - 780.0 4.0 2.82 0.0 365.8 7.0 4,-1 0.056 - 13.81 MINOR ENSMUSG00000090966 Vmn2r116 ENSMUST00000234839 ENSMUSP00000157298 TRANSLATION nonsense_mediated_decay - - - 69.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000090966 Vmn2r116 ENSMUST00000234055 ENSMUSP00000157330 TRANSLATION nonsense_mediated_decay - - - 78.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000090966 Vmn2r116 ENSMUST00000234564 ENSMUSP00000157066 TRANSLATION protein_coding - - - 816.0 4.0 3.14 0.0 365.3 7.0 4,-1 0.0756 - 14.416 MINOR ENSMUSG00000090966 Vmn2r116 ENSMUST00000164856 ENSMUSP00000128106 TRANSLATION protein_coding - CCDS50009.1 1 856.0 4.0 3.64 0.1 375.0 7.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000094878 Or2g7 ENSMUST00000087129 ENSMUSP00000084369 TRANSLATION protein_coding - CCDS28773.1 - 317.0 0.0 1.0 4.6 150.7 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094878 Or2g7 ENSMUST00000217390 ENSMUSP00000149601 TRANSLATION protein_coding - CCDS28773.1 5 317.0 0.0 1.0 4.6 150.7 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094878 Or2g7 ENSMUST00000215726 ENSMUSP00000149963 TRANSLATION protein_coding - CCDS28773.1 5 317.0 0.0 1.0 4.6 150.7 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024128 Sbp ENSMUST00000183017 ENSMUSP00000138447 TRANSLATION protein_coding - - 5 40.0 0.0 0.5 0.0 0.0 0.0 4,-1 0.0036 - 0.0 MINOR ENSMUSG00000024128 Sbp ENSMUST00000182519 ENSMUSP00000138338 TRANSLATION protein_coding - - 2 95.0 0.0 2.25 0.0 0.0 0.0 4,-1 0.0035 1 2.34 MINOR ENSMUSG00000024128 Sbp ENSMUST00000182868 ENSMUSP00000138491 TRANSLATION protein_coding stop - 1 194.0 0.0 4.08 0.0 50.0 0.0 1,-3 0.1344 4 -2.0 MINOR ENSMUSG00000024128 Sbp ENSMUST00000181985 ENSMUSP00000138422 TRANSLATION protein_coding - CCDS57056.1 3 199.0 0.0 4.08 0.0 50.0 0.0 4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000024128 Sbp ENSMUST00000183252 ENSMUSP00000138219 TRANSLATION protein_coding - CCDS57056.1 1 199.0 0.0 4.08 0.0 50.0 0.0 4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000024128 Sbp ENSMUST00000024940 ENSMUSP00000024940 TRANSLATION protein_coding - CCDS57056.1 1 199.0 0.0 4.08 0.0 50.0 0.0 4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000024128 Sbp ENSMUST00000183155 ENSMUSP00000138341 TRANSLATION protein_coding - CCDS57056.1 2 199.0 0.0 4.08 0.0 50.0 0.0 4,-1 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000023942 Slc29a1 ENSMUST00000169729 ENSMUSP00000127343 TRANSLATION protein_coding stop - 3 114.0 0.0 2.16 0.0 0.0 4.0 -4,-5 0.0024 1 -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000168274 ENSMUSP00000127754 TRANSLATION protein_coding stop - 3 41.0 0.0 1.014 0.0 0.0 2.0 -2,-5 0.0005 - -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000164217 ENSMUSP00000131646 TRANSLATION protein_coding stop - 5 262.0 0.0 6.284 0.0 147.7 15.0 -4,-5 0.0027 2 -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000171978 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023942 Slc29a1 ENSMUST00000170425 - NO_TRANSLATION retained_intron ENSMUSG00000023942 Slc29a1 ENSMUST00000167863 - NO_TRANSLATION retained_intron ENSMUSG00000023942 Slc29a1 ENSMUST00000171081 ENSMUSP00000131217 TRANSLATION protein_coding stop - 5 262.0 0.0 6.284 0.0 147.7 15.0 -4,-5 0.0027 2 -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000172301 ENSMUSP00000129345 TRANSLATION protein_coding stop - 5 121.0 0.0 2.344 0.0 0.0 5.0 -4,-5 0.0024 1 -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000097317 ENSMUSP00000094923 TRANSLATION protein_coding - CCDS57096.1 1 460.0 0.0 8.754 5.8 426.6 22.0 -4,-5 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000023942 Slc29a1 ENSMUST00000051574 ENSMUSP00000063096 TRANSLATION protein_coding - CCDS57096.1 5 460.0 0.0 8.754 5.8 426.6 22.0 -4,-5 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000023942 Slc29a1 ENSMUST00000167332 ENSMUSP00000131483 TRANSLATION protein_coding stop - 5 93.0 0.0 1.514 0.0 0.0 2.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000164618 ENSMUSP00000126934 TRANSLATION protein_coding stop - 3 162.0 0.0 3.834 0.0 0.0 11.0 -4,-5 0.0039 1 -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000171876 - NO_TRANSLATION retained_intron ENSMUSG00000023942 Slc29a1 ENSMUST00000064889 ENSMUSP00000063757 TRANSLATION protein_coding - CCDS28813.1 1 458.0 0.0 8.754 5.1 424.4 22.0 -4,-5 0.8909 6 9.708 ALTERNATIVE:1 ENSMUSG00000023942 Slc29a1 ENSMUST00000164769 ENSMUSP00000131116 TRANSLATION protein_coding - - 1 358.0 0.0 6.954 0.0 261.4 19.0 -4,-5 0.0037 4 2.4 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000170113 ENSMUSP00000128304 TRANSLATION protein_coding stop - 5 56.0 0.0 1.414 0.0 0.0 2.0 -3,-5 0.0005 - -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000163492 ENSMUSP00000129242 TRANSLATION protein_coding - CCDS28813.1 1 458.0 0.0 8.754 5.1 424.4 22.0 -4,-5 0.8909 6 9.708 ALTERNATIVE:1 ENSMUSG00000023942 Slc29a1 ENSMUST00000167748 - NO_TRANSLATION retained_intron ENSMUSG00000023942 Slc29a1 ENSMUST00000170488 ENSMUSP00000128999 TRANSLATION protein_coding stop - 5 39.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000171847 ENSMUSP00000126703 TRANSLATION protein_coding - CCDS28813.1 1 458.0 0.0 8.754 5.1 424.4 22.0 -4,-5 0.8909 6 9.708 ALTERNATIVE:1 ENSMUSG00000023942 Slc29a1 ENSMUST00000167692 ENSMUSP00000131976 TRANSLATION protein_coding - CCDS57096.1 1 460.0 0.0 8.754 5.8 426.6 22.0 -4,-5 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000023942 Slc29a1 ENSMUST00000163905 ENSMUSP00000129240 TRANSLATION protein_coding stop - 2 160.0 0.0 3.834 0.0 0.0 8.0 -4,-5 0.0039 1 -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000167195 ENSMUSP00000133162 TRANSLATION protein_coding stop - 3 105.0 0.0 1.83 0.0 0.0 4.0 -4,-6 0.0024 1 -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000166633 ENSMUSP00000131075 TRANSLATION protein_coding stop - 3 195.0 0.0 4.834 0.0 68.5 12.0 -4,-5 0.0038 1 -2.0 MINOR ENSMUSG00000023942 Slc29a1 ENSMUST00000166119 ENSMUSP00000128763 TRANSLATION protein_coding - CCDS57096.1 5 460.0 0.0 8.754 5.8 426.6 22.0 -4,-5 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000023992 Trem2 ENSMUST00000132340 - NO_TRANSLATION retained_intron ENSMUSG00000023992 Trem2 ENSMUST00000113237 ENSMUSP00000108863 TRANSLATION protein_coding - CCDS70825.1 1 249.0 0.0 1.4 0.0 32.5 0.0 3,-2 0.1631 1 9.816 MINOR ENSMUSG00000023992 Trem2 ENSMUST00000024791 ENSMUSP00000024791 TRANSLATION protein_coding - CCDS28865.1 1 227.0 0.0 2.2 5.4 32.5 0.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000023992 Trem2 ENSMUST00000148545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000117190 Esp5 ENSMUST00000233672 ENSMUSP00000156402 TRANSLATION protein_coding - CCDS70814.1 - 150.0 0.0 0.0 0.0 127.7 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046991 Wdr27 ENSMUST00000228221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046991 Wdr27 ENSMUST00000228869 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046991 Wdr27 ENSMUST00000232147 ENSMUSP00000155992 TRANSLATION nonsense_mediated_decay - - - 825.0 0.0 8.306 1.2 71.2 0.0 -4,-5 0.7886 - -2.0 MINOR ENSMUSG00000046991 Wdr27 ENSMUST00000228330 ENSMUSP00000153717 TRANSLATION protein_coding - CCDS37443.1 - 780.0 0.0 6.522 0.0 50.8 0.0 -4,-5 0.1092 - 6.708 MINOR ENSMUSG00000046991 Wdr27 ENSMUST00000227673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046991 Wdr27 ENSMUST00000228233 ENSMUSP00000158684 TRANSLATION protein_coding start - - 272.0 0.0 3.47 0.0 32.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046991 Wdr27 ENSMUST00000170386 ENSMUSP00000126736 TRANSLATION protein_coding - CCDS37443.1 5 780.0 0.0 6.522 0.0 50.8 0.0 -4,-5 0.1092 - 6.708 MINOR ENSMUSG00000046991 Wdr27 ENSMUST00000238668 ENSMUSP00000158649 TRANSLATION protein_coding - - - 825.0 0.0 8.306 1.2 71.2 0.0 -4,-5 0.7886 - 13.0 PRINCIPAL:1 ENSMUSG00000025738 Fbxl16 ENSMUST00000235694 ENSMUSP00000157669 TRANSLATION protein_coding start - - 122.0 0.0 3.08 0.0 15.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025738 Fbxl16 ENSMUST00000045692 ENSMUSP00000048562 TRANSLATION protein_coding - CCDS50036.1 5 479.0 0.0 5.83 7.1 39.6 0.0 -4,-5 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000025738 Fbxl16 ENSMUST00000236165 ENSMUSP00000157536 TRANSLATION protein_coding - CCDS50036.1 - 479.0 0.0 5.83 7.1 39.6 0.0 -4,-5 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000014769 Psmb1 ENSMUST00000231341 ENSMUSP00000156355 TRANSLATION protein_coding - - - 203.0 0.0 4.2995 0.0 120.4 0.0 -4,-5 0.0014 4 9.234 MINOR ENSMUSG00000014769 Psmb1 ENSMUST00000231696 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014769 Psmb1 ENSMUST00000014913 ENSMUSP00000014913 TRANSLATION protein_coding - CCDS28411.1 1 240.0 0.0 5.25 31.3 134.8 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000014769 Psmb1 ENSMUST00000232500 ENSMUSP00000156359 TRANSLATION protein_coding - - - 140.0 0.0 3.0 0.1 68.8 0.0 -4,-2 0.0 6 3.54 MINOR ENSMUSG00000032717 Mdfi ENSMUST00000113280 ENSMUSP00000108905 TRANSLATION protein_coding - - 5 186.0 0.0 0.0 2.4 173.6 0.0 -4,-6 0.1717 - 6.537 MINOR ENSMUSG00000032717 Mdfi ENSMUST00000129360 ENSMUSP00000114930 TRANSLATION protein_coding stop - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032717 Mdfi ENSMUST00000140234 - NO_TRANSLATION retained_intron ENSMUSG00000032717 Mdfi ENSMUST00000035375 ENSMUSP00000037888 TRANSLATION protein_coding - CCDS50134.1 1 246.0 0.0 0.0 8.8 170.2 0.0 -4,-7 1.0 - 8.796 PRINCIPAL:1 ENSMUSG00000032717 Mdfi ENSMUST00000132125 ENSMUSP00000114581 TRANSLATION protein_coding stop - 2 124.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000032717 Mdfi ENSMUST00000125745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032717 Mdfi ENSMUST00000066368 ENSMUSP00000069915 TRANSLATION protein_coding - CCDS50134.1 1 246.0 0.0 0.0 8.8 170.2 0.0 -4,-7 1.0 - 8.796 PRINCIPAL:1 ENSMUSG00000032717 Mdfi ENSMUST00000131971 ENSMUSP00000120454 TRANSLATION protein_coding stop - 5 143.0 0.0 0.0 0.0 102.7 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000032717 Mdfi ENSMUST00000152455 ENSMUSP00000117665 TRANSLATION protein_coding stop - 2 153.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000092111 Vmn2r113 ENSMUST00000234787 ENSMUSP00000156994 TRANSLATION protein_coding - - - 805.0 4.0 2.35 0.0 347.8 7.0 4,-1 0.0307 - 13.03 MINOR ENSMUSG00000092111 Vmn2r113 ENSMUST00000170322 ENSMUSP00000127981 TRANSLATION protein_coding - CCDS50006.1 1 856.0 4.0 2.95 0.1 377.0 7.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000092111 Vmn2r113 ENSMUST00000234875 - NO_TRANSLATION retained_intron ENSMUSG00000092111 Vmn2r113 ENSMUST00000234192 - NO_TRANSLATION retained_intron ENSMUSG00000092111 Vmn2r113 ENSMUST00000234465 ENSMUSP00000157294 TRANSLATION nonsense_mediated_decay - - - 514.0 0.0 1.65 0.0 104.3 0.0 4,-1 0.0006 - -2.0 MINOR ENSMUSG00000090675 Or5v1b ENSMUST00000097325 ENSMUSP00000094933 TRANSLATION protein_coding - CCDS28755.1 - 317.0 0.0 1.0 7.5 181.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000090675 Or5v1b ENSMUST00000214259 ENSMUSP00000150585 TRANSLATION protein_coding - CCDS28755.1 5 317.0 0.0 1.0 7.5 181.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000090675 Or5v1b ENSMUST00000215424 ENSMUSP00000150806 TRANSLATION protein_coding - CCDS28755.1 5 317.0 0.0 1.0 7.5 181.9 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000063383 Zfp947 ENSMUST00000080249 ENSMUSP00000079137 TRANSLATION protein_coding - CCDS49999.1 1 437.0 36.0 1.2 0.0 262.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000058435 Btnl4 ENSMUST00000236448 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058435 Btnl4 ENSMUST00000065841 ENSMUSP00000064161 TRANSLATION protein_coding - CCDS50077.1 5 586.0 0.0 4.324 0.0 126.9 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000052105 Mtcl1 ENSMUST00000144492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052105 Mtcl1 ENSMUST00000145347 ENSMUSP00000121387 TRANSLATION protein_coding start - 1 1496.0 0.0 0.8 0.0 361.6 0.0 -4,-5 0.2217 19 -2.0 MINOR ENSMUSG00000052105 Mtcl1 ENSMUST00000177034 ENSMUSP00000135690 TRANSLATION protein_coding - - 5 1590.0 0.0 1.398 0.0 361.6 0.0 -4,-5 0.3217 22 8.0 ALTERNATIVE:2 ENSMUSG00000052105 Mtcl1 ENSMUST00000127259 - NO_TRANSLATION retained_intron ENSMUSG00000052105 Mtcl1 ENSMUST00000134139 - NO_TRANSLATION retained_intron ENSMUSG00000052105 Mtcl1 ENSMUST00000086693 ENSMUSP00000083899 TRANSLATION protein_coding - CCDS28946.2 1 1945.0 0.0 1.398 0.1 361.6 0.0 -4,-5 1.0 29 8.0 PRINCIPAL:2 ENSMUSG00000052105 Mtcl1 ENSMUST00000097291 ENSMUSP00000094894 TRANSLATION protein_coding - CCDS50168.1 1 1893.0 0.0 1.398 0.4 361.6 0.0 -4,-5 0.627 29 8.0 ALTERNATIVE:2 ENSMUSG00000052105 Mtcl1 ENSMUST00000129525 - NO_TRANSLATION retained_intron ENSMUSG00000052105 Mtcl1 ENSMUST00000142154 - NO_TRANSLATION retained_intron ENSMUSG00000052105 Mtcl1 ENSMUST00000129841 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024034 Tmprss3 ENSMUST00000024833 ENSMUSP00000024833 TRANSLATION protein_coding - CCDS37547.1 1 453.0 5.0 5.4 8.2 349.0 2.0 -4,-6 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000024034 Tmprss3 ENSMUST00000236793 ENSMUSP00000158048 TRANSLATION protein_coding - CCDS37547.1 - 453.0 5.0 5.4 8.2 349.0 2.0 -4,-6 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000024034 Tmprss3 ENSMUST00000237740 ENSMUSP00000158320 TRANSLATION protein_coding - - - 451.0 5.0 5.4 8.2 349.0 2.0 -4,-7 0.7924 - 16.0 ALTERNATIVE:1 ENSMUSG00000024034 Tmprss3 ENSMUST00000114549 ENSMUSP00000110196 TRANSLATION protein_coding - CCDS50053.1 1 475.0 5.0 5.4 3.3 349.0 2.0 -4,-5 0.4675 - 13.957 MINOR ENSMUSG00000024116 Prss21 ENSMUST00000024928 ENSMUSP00000024928 TRANSLATION protein_coding - CCDS28468.1 1 324.0 6.0 2.76 0.1 222.5 0.0 2,-2 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000024116 Prss21 ENSMUST00000235013 - NO_TRANSLATION retained_intron ENSMUSG00000073418 C4b ENSMUST00000173057 ENSMUSP00000134611 TRANSLATION nonsense_mediated_decay start - 5 62.0 0.0 1.5 0.0 62.7 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000073418 C4b ENSMUST00000069507 ENSMUSP00000069418 TRANSLATION protein_coding - CCDS28657.1 1 1738.0 2.0 36.85 2.2 740.3 0.0 0,-3 1.0 40 15.0 PRINCIPAL:1 ENSMUSG00000073418 C4b ENSMUST00000173669 - NO_TRANSLATION retained_intron ENSMUSG00000042848 Vmn1r226 ENSMUST00000232708 ENSMUSP00000156517 TRANSLATION protein_coding - CCDS28426.1 - 298.0 0.0 0.0 1.1 85.0 5.0 0,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000042848 Vmn1r226 ENSMUST00000233959 ENSMUSP00000156961 TRANSLATION protein_coding - CCDS28426.1 - 298.0 0.0 0.0 1.1 85.0 5.0 0,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000042848 Vmn1r226 ENSMUST00000232818 ENSMUSP00000156925 TRANSLATION protein_coding - CCDS28426.1 - 298.0 0.0 0.0 1.1 85.0 5.0 0,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000042848 Vmn1r226 ENSMUST00000233722 ENSMUSP00000156912 TRANSLATION protein_coding - CCDS28426.1 - 298.0 0.0 0.0 1.1 85.0 5.0 0,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000042848 Vmn1r226 ENSMUST00000061756 ENSMUSP00000058266 TRANSLATION protein_coding - CCDS28426.1 - 298.0 0.0 0.0 1.1 85.0 5.0 0,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000042848 Vmn1r226 ENSMUST00000233808 ENSMUSP00000156839 TRANSLATION protein_coding - CCDS28426.1 - 298.0 0.0 0.0 1.1 85.0 5.0 0,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000042848 Vmn1r226 ENSMUST00000233159 ENSMUSP00000156658 TRANSLATION protein_coding - CCDS28426.1 - 298.0 0.0 0.0 1.1 85.0 5.0 0,-4 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000037649 H2-DMa ENSMUST00000235408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037649 H2-DMa ENSMUST00000042121 ENSMUSP00000037088 TRANSLATION protein_coding - CCDS37579.1 1 261.0 0.0 4.25 8.8 120.2 1.0 1,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000037649 H2-DMa ENSMUST00000173907 - NO_TRANSLATION retained_intron ENSMUSG00000037649 H2-DMa ENSMUST00000237476 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037649 H2-DMa ENSMUST00000236322 ENSMUSP00000157660 TRANSLATION protein_coding - CCDS37579.1 - 261.0 0.0 4.25 8.8 120.2 1.0 1,-3 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000037649 H2-DMa ENSMUST00000236938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037649 H2-DMa ENSMUST00000235910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037649 H2-DMa ENSMUST00000237402 ENSMUSP00000158155 TRANSLATION protein_coding - - - 41.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.0019 - 0.0 MINOR ENSMUSG00000023995 Tspo2 ENSMUST00000162481 ENSMUSP00000124308 TRANSLATION protein_coding - - 5 68.0 0.0 0.6 0.0 26.5 2.0 -4,-5 0.0025 - 2.298 MINOR ENSMUSG00000023995 Tspo2 ENSMUST00000024794 ENSMUSP00000024794 TRANSLATION protein_coding - CCDS28869.1 1 162.0 0.0 2.7 0.1 110.4 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000023995 Tspo2 ENSMUST00000159478 - NO_TRANSLATION retained_intron ENSMUSG00000023995 Tspo2 ENSMUST00000159988 ENSMUSP00000124843 TRANSLATION protein_coding - - 5 134.0 0.0 2.25 0.0 73.4 6.0 -4,-5 0.0099 - 8.778 MINOR ENSMUSG00000023995 Tspo2 ENSMUST00000160259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024029 Tff3 ENSMUST00000024827 ENSMUSP00000024827 TRANSLATION protein_coding - CCDS37544.1 1 81.0 0.0 1.75 7.0 56.3 0.0 3,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000023902 Zscan10 ENSMUST00000120967 ENSMUSP00000113386 TRANSLATION protein_coding - CCDS70766.1 1 750.0 53.0 4.0 0.0 389.7 0.0 -4,-5 0.1895 - 10.202 MINOR ENSMUSG00000023902 Zscan10 ENSMUST00000129227 ENSMUSP00000118987 TRANSLATION protein_coding stop - 1 543.0 53.0 2.0 0.0 285.5 0.0 -4,-5 0.0462 - -2.0 MINOR ENSMUSG00000023902 Zscan10 ENSMUST00000122285 ENSMUSP00000112559 TRANSLATION nonsense_mediated_decay - - 1 190.0 0.0 2.0 0.0 104.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023902 Zscan10 ENSMUST00000115509 ENSMUSP00000111171 TRANSLATION protein_coding - CCDS79510.1 1 672.0 56.0 4.6 0.0 406.7 0.0 -4,-5 0.2595 - 14.0 ALTERNATIVE:2 ENSMUSG00000023902 Zscan10 ENSMUST00000133749 - NO_TRANSLATION retained_intron ENSMUSG00000023902 Zscan10 ENSMUST00000148062 ENSMUSP00000120876 TRANSLATION protein_coding stop - 1 702.0 53.0 3.0 0.0 343.4 0.0 -4,-5 0.0528 - -2.0 MINOR ENSMUSG00000023902 Zscan10 ENSMUST00000123866 ENSMUSP00000116748 TRANSLATION protein_coding stop - 1 329.0 8.0 3.264 0.0 142.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023902 Zscan10 ENSMUST00000138487 ENSMUSP00000114341 TRANSLATION protein_coding stop - 1 262.0 5.0 3.2 0.0 125.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023902 Zscan10 ENSMUST00000117606 ENSMUSP00000112460 TRANSLATION protein_coding - - 1 149.0 0.0 2.0 0.0 104.2 0.0 -4,-5 0.0 - 0.798 MINOR ENSMUSG00000023902 Zscan10 ENSMUST00000118369 ENSMUSP00000113757 TRANSLATION protein_coding - - 1 190.0 0.0 2.0 0.0 104.2 0.0 -4,-5 0.0 - 0.798 MINOR ENSMUSG00000023902 Zscan10 ENSMUST00000125912 - NO_TRANSLATION retained_intron ENSMUSG00000023902 Zscan10 ENSMUST00000095595 ENSMUSP00000093255 TRANSLATION protein_coding - CCDS28451.1 1 782.0 56.0 4.6 0.4 406.7 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000071230 Npw ENSMUST00000095544 ENSMUSP00000093200 TRANSLATION protein_coding - CCDS50017.1 1 176.0 0.0 0.0 0.0 103.0 0.0 1,-1 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000036214 Polr1has ENSMUST00000173814 ENSMUSP00000134016 TRANSLATION protein_coding - - 1 213.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5994 - 0.0 PRINCIPAL:2 ENSMUSG00000036214 Polr1has ENSMUST00000040177 ENSMUSP00000048695 TRANSLATION protein_coding - - 1 213.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5994 - 0.0 PRINCIPAL:2 ENSMUSG00000036214 Polr1has ENSMUST00000209623 ENSMUSP00000147556 TRANSLATION protein_coding - - 5 362.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.0519 - 0.0 ALTERNATIVE:2 ENSMUSG00000036214 Polr1has ENSMUST00000172672 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049672 Zbtb14 ENSMUST00000062369 ENSMUSP00000054897 TRANSLATION protein_coding - CCDS37682.1 1 449.0 19.0 0.2 23.8 186.1 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000049672 Zbtb14 ENSMUST00000112676 ENSMUSP00000108296 TRANSLATION protein_coding - CCDS37682.1 1 449.0 19.0 0.2 23.8 186.1 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000049672 Zbtb14 ENSMUST00000112674 ENSMUSP00000108294 TRANSLATION protein_coding - CCDS37682.1 3 449.0 19.0 0.2 23.8 186.1 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000048062 Fpr-rs4 ENSMUST00000095651 ENSMUSP00000093311 TRANSLATION protein_coding - CCDS49968.1 - 323.0 0.0 1.0 0.1 116.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058114 Or14j6 ENSMUST00000076331 ENSMUSP00000075669 TRANSLATION protein_coding - CCDS28769.1 - 323.0 0.0 1.0 0.1 156.2 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058114 Or14j6 ENSMUST00000217223 ENSMUSP00000149133 TRANSLATION protein_coding - CCDS28769.1 5 323.0 0.0 1.0 0.1 156.2 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000117495 Nfilz ENSMUST00000234517 ENSMUSP00000159029 TRANSLATION protein_coding - - - 278.0 0.0 0.4 0.4 52.1 0.0 -4,-6 0.7743 - 12.0 PRINCIPAL:1 ENSMUSG00000025727 Prr35 ENSMUST00000162431 ENSMUSP00000125106 TRANSLATION protein_coding - - 1 571.0 3.0 0.0 0.4 122.0 0.0 -4,-6 0.7436 - 9.0 PRINCIPAL:1 ENSMUSG00000096840 Or2n1d ENSMUST00000208539 ENSMUSP00000146828 TRANSLATION protein_coding - CCDS28781.1 3 312.0 0.0 1.0 9.9 163.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096840 Or2n1d ENSMUST00000077203 ENSMUSP00000076443 TRANSLATION protein_coding - CCDS28781.1 - 312.0 0.0 1.0 9.9 163.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096840 Or2n1d ENSMUST00000214035 ENSMUSP00000149871 TRANSLATION protein_coding - CCDS28781.1 5 312.0 0.0 1.0 9.9 163.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096840 Or2n1d ENSMUST00000208525 ENSMUSP00000147166 TRANSLATION protein_coding - CCDS28781.1 5 312.0 0.0 1.0 9.9 163.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096840 Or2n1d ENSMUST00000216963 ENSMUSP00000149856 TRANSLATION protein_coding - CCDS28781.1 5 312.0 0.0 1.0 9.9 163.3 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033475 Tomm6 ENSMUST00000143156 - NO_TRANSLATION retained_intron ENSMUSG00000033475 Tomm6 ENSMUST00000113301 ENSMUSP00000108926 TRANSLATION protein_coding - CCDS37643.1 2 74.0 0.0 1.8 9.9 151.8 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000033475 Tomm6 ENSMUST00000113302 ENSMUSP00000108927 TRANSLATION protein_coding - CCDS37643.1 1 74.0 0.0 1.8 9.9 151.8 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024371 C2 ENSMUST00000025230 ENSMUSP00000025230 TRANSLATION protein_coding - CCDS28664.1 1 760.0 6.0 14.93 0.0 310.7 0.0 3,-2 1.0 16 18.0 PRINCIPAL:1 ENSMUSG00000024371 C2 ENSMUST00000174279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024371 C2 ENSMUST00000130728 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024371 C2 ENSMUST00000127795 - NO_TRANSLATION retained_intron ENSMUSG00000024371 C2 ENSMUST00000134300 ENSMUSP00000114241 TRANSLATION protein_coding start/stop - 3 180.0 2.0 3.25 0.0 70.6 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024371 C2 ENSMUST00000174880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024371 C2 ENSMUST00000148431 ENSMUSP00000120009 TRANSLATION protein_coding - - 5 483.0 6.0 10.93 0.0 184.5 0.0 -4,-5 0.0 10 6.0 MINOR ENSMUSG00000024371 C2 ENSMUST00000152417 ENSMUSP00000123536 TRANSLATION protein_coding - - 5 623.0 6.0 13.73 1.0 277.4 0.0 3,-2 0.0363 13 13.602 MINOR ENSMUSG00000117819 Gm50253 ENSMUST00000133257 ENSMUSP00000115777 TRANSLATION nonsense_mediated_decay,RT - CCDS37520.1 1 459.0 10.0 0.5 0.1 76.5 0.0 -4,-6 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000090572 Vmn2r109 ENSMUST00000167093 ENSMUSP00000132641 TRANSLATION protein_coding - CCDS49987.1 5 858.0 4.0 2.37 0.1 386.5 0.0 3,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024220 Zfp523 ENSMUST00000233458 - NO_TRANSLATION retained_intron ENSMUSG00000024220 Zfp523 ENSMUST00000233613 ENSMUSP00000156638 TRANSLATION protein_coding - CCDS28573.1 - 568.0 27.0 6.774 10.3 137.6 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000024220 Zfp523 ENSMUST00000155030 ENSMUSP00000117730 TRANSLATION protein_coding start/stop - 3 189.0 0.0 1.274 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024220 Zfp523 ENSMUST00000233021 - NO_TRANSLATION retained_intron ENSMUSG00000024220 Zfp523 ENSMUST00000129522 ENSMUSP00000125689 TRANSLATION nonsense_mediated_decay start - 5 189.0 7.0 2.274 0.0 37.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024220 Zfp523 ENSMUST00000151595 - NO_TRANSLATION retained_intron ENSMUSG00000024220 Zfp523 ENSMUST00000145313 - NO_TRANSLATION retained_intron ENSMUSG00000024220 Zfp523 ENSMUST00000233841 ENSMUSP00000156865 TRANSLATION nonsense_mediated_decay - - - 342.0 24.0 4.5 0.0 100.3 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000024220 Zfp523 ENSMUST00000002318 ENSMUSP00000002318 TRANSLATION protein_coding - CCDS28573.1 1 568.0 27.0 6.774 10.3 137.6 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000024220 Zfp523 ENSMUST00000073534 ENSMUSP00000073226 TRANSLATION protein_coding - CCDS28573.1 5 568.0 27.0 6.774 10.3 137.6 0.0 -4,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000024220 Zfp523 ENSMUST00000232845 ENSMUSP00000156739 TRANSLATION nonsense_mediated_decay start - - 258.0 20.0 4.622 0.0 100.3 0.0 -4,-7 0.0009 1 -2.0 MINOR ENSMUSG00000024220 Zfp523 ENSMUST00000233904 ENSMUSP00000156435 TRANSLATION protein_coding - - - 513.0 27.0 6.774 4.4 137.6 0.0 -4,-5 0.4539 2 19.098 MINOR ENSMUSG00000024220 Zfp523 ENSMUST00000161275 ENSMUSP00000156758 TRANSLATION nonsense_mediated_decay - - 1 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024220 Zfp523 ENSMUST00000133868 ENSMUSP00000123127 TRANSLATION protein_coding start/stop - 5 292.0 23.0 5.11 0.0 121.9 0.0 -4,-5 0.0033 1 -2.0 MINOR ENSMUSG00000048602 Morc2b ENSMUST00000234062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048602 Morc2b ENSMUST00000053896 ENSMUSP00000056879 TRANSLATION protein_coding - CCDS37561.1 1 1022.0 9.0 0.8 0.4 152.0 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000048602 Morc2b ENSMUST00000131954 ENSMUSP00000123354 TRANSLATION protein_coding - CCDS37561.1 - 1022.0 9.0 0.8 0.4 152.0 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000024013 Fgd2 ENSMUST00000235065 - NO_TRANSLATION retained_intron ENSMUSG00000024013 Fgd2 ENSMUST00000146800 - NO_TRANSLATION retained_intron ENSMUSG00000024013 Fgd2 ENSMUST00000235007 - NO_TRANSLATION retained_intron ENSMUSG00000024013 Fgd2 ENSMUST00000137644 ENSMUSP00000157303 TRANSLATION protein_coding - - 5 316.0 8.0 3.705 0.0 100.2 0.0 -4,-7 0.0013 6 6.0 MINOR ENSMUSG00000024013 Fgd2 ENSMUST00000145124 - NO_TRANSLATION retained_intron ENSMUSG00000024013 Fgd2 ENSMUST00000234163 ENSMUSP00000157333 TRANSLATION nonsense_mediated_decay - - - 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024013 Fgd2 ENSMUST00000144616 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024013 Fgd2 ENSMUST00000138537 - NO_TRANSLATION retained_intron ENSMUSG00000024013 Fgd2 ENSMUST00000123989 ENSMUSP00000118828 TRANSLATION nonsense_mediated_decay - - 5 391.0 0.0 1.53 0.0 89.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024013 Fgd2 ENSMUST00000234838 - NO_TRANSLATION retained_intron ENSMUSG00000024013 Fgd2 ENSMUST00000024810 ENSMUSP00000024810 TRANSLATION protein_coding - CCDS37537.1 1 655.0 8.0 6.949 1.2 283.7 0.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000024013 Fgd2 ENSMUST00000140918 - NO_TRANSLATION retained_intron ENSMUSG00000067942 Zfp160 ENSMUST00000231679 - NO_TRANSLATION retained_intron ENSMUSG00000067942 Zfp160 ENSMUST00000088811 ENSMUSP00000086191 TRANSLATION protein_coding - CCDS28434.1 1 650.0 72.0 3.9 0.0 547.2 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000067942 Zfp160 ENSMUST00000232473 ENSMUSP00000155916 TRANSLATION protein_coding - - - 71.0 0.0 0.9 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000067942 Zfp160 ENSMUST00000231482 ENSMUSP00000156357 TRANSLATION protein_coding - - - 71.0 0.0 0.9 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000067942 Zfp160 ENSMUST00000232354 ENSMUSP00000155977 TRANSLATION protein_coding stop - - 267.0 17.0 2.9 0.0 183.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000067942 Zfp160 ENSMUST00000232595 ENSMUSP00000156115 TRANSLATION protein_coding - - - 93.0 0.0 1.9 0.0 85.9 0.0 -4,-5 0.0068 - 1.998 MINOR ENSMUSG00000067942 Zfp160 ENSMUST00000232320 ENSMUSP00000156216 TRANSLATION protein_coding - - - 110.0 0.0 1.9 0.0 85.9 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000067942 Zfp160 ENSMUST00000232663 ENSMUSP00000156064 TRANSLATION protein_coding - - - 107.0 0.0 1.9 0.0 85.9 0.0 -4,-5 0.0 - 1.998 MINOR ENSMUSG00000040688 Tbl3 ENSMUST00000130633 ENSMUSP00000117818 TRANSLATION protein_coding start/stop - 5 299.0 0.0 3.354 0.0 188.7 0.0 -4,-6 0.0011 8 -2.0 MINOR ENSMUSG00000040688 Tbl3 ENSMUST00000046534 - NO_TRANSLATION retained_intron ENSMUSG00000040688 Tbl3 ENSMUST00000142362 - NO_TRANSLATION retained_intron ENSMUSG00000040688 Tbl3 ENSMUST00000126319 ENSMUSP00000120911 TRANSLATION protein_coding - CCDS28493.1 1 801.0 0.0 9.619 5.2 321.3 0.0 -4,-6 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000040688 Tbl3 ENSMUST00000149326 - NO_TRANSLATION retained_intron ENSMUSG00000079471 Mymx ENSMUST00000113529 ENSMUSP00000109157 TRANSLATION protein_coding - CCDS50119.1 2 84.0 0.0 0.0 1.8 0.0 0.0 -1,-1 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000079471 Mymx ENSMUST00000169137 ENSMUSP00000126690 TRANSLATION protein_coding - CCDS50120.1 2 108.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.1507 - 0.0 ALTERNATIVE:2 ENSMUSG00000079471 Mymx ENSMUST00000178858 ENSMUSP00000137630 TRANSLATION protein_coding - CCDS50119.1 1 84.0 0.0 0.0 1.8 0.0 0.0 -1,-1 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000079471 Mymx ENSMUST00000208801 ENSMUSP00000146823 TRANSLATION protein_coding - CCDS50119.1 2 84.0 0.0 0.0 1.8 0.0 0.0 -1,-1 1.0 - 1.0 PRINCIPAL:2 ENSMUSG00000024175 Tekt4 ENSMUST00000249762 ENSMUSP00000159920 TRANSLATION nonsense_mediated_decay - - - 207.0 0.0 1.15 0.0 129.9 0.0 -,- 0.0 7 -2.0 MINOR ENSMUSG00000024175 Tekt4 ENSMUST00000249769 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024175 Tekt4 ENSMUST00000249768 - NO_TRANSLATION retained_intron ENSMUSG00000024175 Tekt4 ENSMUST00000249767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024175 Tekt4 ENSMUST00000234104 ENSMUSP00000159924 TRANSLATION protein_coding - - - 235.0 0.0 4.33 0.0 287.4 0.0 -,- 0.0007 7 1.842 MINOR ENSMUSG00000024175 Tekt4 ENSMUST00000249770 ENSMUSP00000159925 TRANSLATION non_stop_decay stop - - 415.0 0.0 4.278 0.0 304.2 0.0 -,- 0.0007 10 -2.0 MINOR ENSMUSG00000024175 Tekt4 ENSMUST00000249771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024175 Tekt4 ENSMUST00000249764 ENSMUSP00000159922 TRANSLATION protein_coding - - - 62.0 0.0 1.0 0.0 61.7 0.0 -,- 0.0 2 0.0 MINOR ENSMUSG00000024175 Tekt4 ENSMUST00000235033 ENSMUSP00000157356 TRANSLATION protein_coding - - - 442.0 0.0 6.41 15.7 443.0 0.0 -,- 0.7814 15 14.716 MINOR ENSMUSG00000024175 Tekt4 ENSMUST00000249766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024175 Tekt4 ENSMUST00000249763 ENSMUSP00000159921 TRANSLATION protein_coding - - - 225.0 0.0 1.0 0.0 129.9 0.0 -,- 0.0 7 0.0 MINOR ENSMUSG00000024175 Tekt4 ENSMUST00000234436 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024175 Tekt4 ENSMUST00000249765 ENSMUSP00000159923 TRANSLATION protein_coding - - - 235.0 0.0 4.33 0.0 287.4 0.0 -,- 0.0007 7 1.842 MINOR ENSMUSG00000024175 Tekt4 ENSMUST00000025002 ENSMUSP00000025002 TRANSLATION protein_coding - CCDS28519.1 1 447.0 0.0 6.41 15.7 464.4 0.0 -,- 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000002289 Angptl4 ENSMUST00000173869 ENSMUSP00000133417 TRANSLATION nonsense_mediated_decay - - 1 154.0 0.0 0.25 0.0 0.0 0.0 1,-2 0.0016 1 -2.0 MINOR ENSMUSG00000002289 Angptl4 ENSMUST00000174872 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002289 Angptl4 ENSMUST00000002360 ENSMUSP00000002360 TRANSLATION protein_coding - CCDS28629.1 1 410.0 6.0 4.548 7.3 187.9 0.0 1,-2 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000002289 Angptl4 ENSMUST00000174858 - NO_TRANSLATION retained_intron ENSMUSG00000037321 Tap1 ENSMUST00000168351 - NO_TRANSLATION retained_intron ENSMUSG00000037321 Tap1 ENSMUST00000041633 ENSMUSP00000039264 TRANSLATION protein_coding - CCDS50072.1 1 696.0 12.0 10.74 0.0 302.0 2.0 2,-2 0.1509 12 14.646 MINOR ENSMUSG00000037321 Tap1 ENSMUST00000166287 - NO_TRANSLATION retained_intron ENSMUSG00000037321 Tap1 ENSMUST00000171148 ENSMUSP00000130189 TRANSLATION protein_coding start/stop - 5 196.0 9.0 4.49 0.0 111.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000037321 Tap1 ENSMUST00000170086 ENSMUSP00000128401 TRANSLATION protein_coding - CCDS28643.1 1 724.0 12.0 11.49 0.1 332.9 2.0 2,-2 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000037321 Tap1 ENSMUST00000166582 - NO_TRANSLATION retained_intron ENSMUSG00000037321 Tap1 ENSMUST00000166853 - NO_TRANSLATION retained_intron ENSMUSG00000024091 Vapa ENSMUST00000024897 ENSMUSP00000024897 TRANSLATION protein_coding - CCDS37677.1 1 249.0 0.0 4.0 14.4 114.1 1.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000024091 Vapa ENSMUST00000232686 ENSMUSP00000156845 TRANSLATION protein_coding start - - 236.0 0.0 2.5 0.0 58.1 1.0 -4,-7 0.0013 6 -2.0 MINOR ENSMUSG00000024182 Axin1 ENSMUST00020183805 ENSMUSP00001091662 TRANSLATION protein_coding - - - 827.0 0.0 2.8 9.1 328.0 0.0 -4,-5 1.0 6 11.0 PRINCIPAL:4 ENSMUSG00000024182 Axin1 ENSMUST00000074370 ENSMUSP00000073974 TRANSLATION protein_coding - - 1 863.0 0.0 2.8 7.7 328.0 0.0 -4,-5 0.8621 6 10.481 ALTERNATIVE:1 ENSMUSG00000024182 Axin1 ENSMUST00000169268 - NO_TRANSLATION retained_intron ENSMUSG00000024182 Axin1 ENSMUST00000163421 ENSMUSP00000132000 TRANSLATION protein_coding stop - 5 682.0 0.0 0.8 0.0 224.6 0.0 -4,-5 0.0027 6 -2.0 MINOR ENSMUSG00000024154 Gtf2a1l ENSMUST00000161481 ENSMUSP00000124286 TRANSLATION protein_coding stop - 3 242.0 0.0 1.464 0.0 97.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024154 Gtf2a1l ENSMUST00000024970 ENSMUSP00000024970 TRANSLATION protein_coding - CCDS29024.1 1 468.0 0.0 3.464 0.1 385.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024154 Gtf2a1l ENSMUST00000234392 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023994 Nfya ENSMUST00000162460 ENSMUSP00000123785 TRANSLATION protein_coding - CCDS28867.1 1 318.0 0.0 2.0 19.0 96.3 0.0 -4,-5 0.961 - 10.916 ALTERNATIVE:1 ENSMUSG00000023994 Nfya ENSMUST00000163066 - NO_TRANSLATION retained_intron ENSMUSG00000023994 Nfya ENSMUST00000159237 ENSMUSP00000124115 TRANSLATION protein_coding start - 3 208.0 0.0 2.0 0.0 96.3 0.0 -4,-5 0.0107 - -2.0 MINOR ENSMUSG00000023994 Nfya ENSMUST00000159063 ENSMUSP00000124404 TRANSLATION protein_coding - CCDS84320.1 1 312.0 0.0 2.0 19.0 96.3 0.0 -4,-5 0.9356 - 10.916 ALTERNATIVE:1 ENSMUSG00000023994 Nfya ENSMUST00000161603 - NO_TRANSLATION retained_intron ENSMUSG00000023994 Nfya ENSMUST00000160319 ENSMUSP00000124245 TRANSLATION protein_coding - - 5 341.0 0.0 2.0 25.7 96.3 0.0 -4,-5 0.8959 - 12.0 ALTERNATIVE:1 ENSMUSG00000023994 Nfya ENSMUST00000160804 - NO_TRANSLATION retained_intron ENSMUSG00000023994 Nfya ENSMUST00000161256 ENSMUSP00000125034 TRANSLATION protein_coding start - 3 211.0 0.0 2.0 0.0 96.3 0.0 -4,-6 0.0103 - -2.0 MINOR ENSMUSG00000023994 Nfya ENSMUST00000078800 ENSMUSP00000077853 TRANSLATION protein_coding - CCDS84321.1 5 346.0 0.0 2.0 22.7 96.3 0.0 -4,-5 1.0 - 11.516 PRINCIPAL:4 ENSMUSG00000023994 Nfya ENSMUST00000161686 - NO_TRANSLATION retained_intron ENSMUSG00000023994 Nfya ENSMUST00000159535 ENSMUSP00000124501 TRANSLATION protein_coding stop - 3 232.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000023994 Nfya ENSMUST00000161117 ENSMUSP00000124965 TRANSLATION protein_coding start/stop - 3 214.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000023994 Nfya ENSMUST00000046719 ENSMUSP00000043909 TRANSLATION protein_coding - CCDS50142.1 1 347.0 0.0 2.0 22.7 96.3 0.0 -4,-5 0.9988 - 11.516 ALTERNATIVE:1 ENSMUSG00000024246 Thumpd2 ENSMUST00000025093 ENSMUSP00000025093 TRANSLATION protein_coding - CCDS50190.1 1 528.0 18.0 2.8 0.3 115.1 0.0 -4,-6 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000024246 Thumpd2 ENSMUST00000234801 ENSMUSP00000157154 TRANSLATION nonsense_mediated_decay - - - 506.0 18.0 2.8 0.0 108.9 0.0 -4,-6 0.0574 4 -2.0 MINOR ENSMUSG00000040260 Daam2 ENSMUST00000226030 - NO_TRANSLATION retained_intron ENSMUSG00000040260 Daam2 ENSMUST00000224595 ENSMUSP00000153095 TRANSLATION protein_coding - - - 524.0 0.0 2.405 0.0 370.3 0.0 -4,-7 0.0 5 0.0 MINOR ENSMUSG00000040260 Daam2 ENSMUST00000224954 - NO_TRANSLATION retained_intron ENSMUSG00000040260 Daam2 ENSMUST00000057610 ENSMUSP00000052085 TRANSLATION protein_coding - CCDS37648.1 1 1115.0 0.0 10.303 0.4 733.9 0.0 -4,-7 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000024308 Tapbp ENSMUST00000234273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024308 Tapbp ENSMUST00000172489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024308 Tapbp ENSMUST00000172619 ENSMUSP00000134695 TRANSLATION protein_coding stop - 2 119.0 0.0 1.93 0.0 0.0 0.0 -3,-5 0.0 3 -2.0 MINOR ENSMUSG00000024308 Tapbp ENSMUST00000234320 ENSMUSP00000157028 TRANSLATION protein_coding stop - - 119.0 0.0 1.6 0.0 0.0 0.0 -2,-5 0.0 3 -2.0 MINOR ENSMUSG00000024308 Tapbp ENSMUST00000234247 ENSMUSP00000157315 TRANSLATION protein_coding - - - 465.0 0.0 4.73 0.3 21.8 2.0 3,-2 0.4343 7 6.0 ALTERNATIVE:2 ENSMUSG00000024308 Tapbp ENSMUST00000025161 ENSMUSP00000025161 TRANSLATION protein_coding - CCDS37572.1 1 466.0 0.0 4.73 0.0 21.8 2.0 3,-2 1.0 7 6.0 PRINCIPAL:2 ENSMUSG00000024308 Tapbp ENSMUST00000234582 ENSMUSP00000157067 TRANSLATION protein_coding stop - - 46.0 0.0 0.6 0.0 0.0 0.0 3,-2 0.0011 - -2.0 MINOR ENSMUSG00000024308 Tapbp ENSMUST00000172653 - NO_TRANSLATION retained_intron ENSMUSG00000024308 Tapbp ENSMUST00000172888 - NO_TRANSLATION retained_intron ENSMUSG00000036775 Decr2 ENSMUST00000237875 ENSMUSP00000157417 TRANSLATION protein_coding - - - 232.0 27.0 6.205 0.0 83.7 0.0 -4,-6 0.0012 5 4.71 MINOR ENSMUSG00000036775 Decr2 ENSMUST00000236614 - NO_TRANSLATION retained_intron ENSMUSG00000036775 Decr2 ENSMUST00000137672 ENSMUSP00000157437 TRANSLATION nonsense_mediated_decay - - 2 76.0 6.0 1.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036775 Decr2 ENSMUST00000237265 ENSMUSP00000157435 TRANSLATION protein_coding - - - 351.0 35.0 7.33 0.0 145.5 0.0 -4,-5 0.0179 7 16.002 MINOR ENSMUSG00000036775 Decr2 ENSMUST00000150534 ENSMUSP00000158163 TRANSLATION protein_coding - - 3 268.0 29.0 7.205 0.0 105.0 0.0 -4,-2 0.0015 6 9.318 MINOR ENSMUSG00000036775 Decr2 ENSMUST00000123056 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036775 Decr2 ENSMUST00000040907 ENSMUSP00000045621 TRANSLATION protein_coding - CCDS28543.1 1 292.0 35.0 8.33 10.1 145.5 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000036775 Decr2 ENSMUST00000236268 ENSMUSP00000158287 TRANSLATION protein_coding - - - 257.0 27.0 7.33 0.0 108.9 0.0 -4,-5 0.0064 5 8.472 MINOR ENSMUSG00000036775 Decr2 ENSMUST00000235318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096169 Or10h5 ENSMUST00000112162 ENSMUSP00000127247 TRANSLATION protein_coding - CCDS57062.1 - 318.0 0.0 1.0 12.5 179.4 8.0 -2,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000096169 Or10h5 ENSMUST00000213751 ENSMUSP00000150267 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 11.4 179.4 8.0 -2,-5 0.8169 - 10.712 ALTERNATIVE:1 ENSMUSG00000096169 Or10h5 ENSMUST00000215450 ENSMUSP00000150573 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 11.4 179.4 8.0 -2,-5 0.8169 - 10.712 ALTERNATIVE:1 ENSMUSG00000096169 Or10h5 ENSMUST00000213642 ENSMUSP00000150517 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 11.4 179.4 8.0 -2,-5 0.8169 - 10.712 ALTERNATIVE:1 ENSMUSG00000096169 Or10h5 ENSMUST00000208645 ENSMUSP00000146792 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 11.4 179.4 8.0 -2,-5 0.8169 - 10.712 ALTERNATIVE:1 ENSMUSG00000043557 Mdga1 ENSMUST00000165528 - NO_TRANSLATION retained_intron ENSMUSG00000043557 Mdga1 ENSMUST00000170786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043557 Mdga1 ENSMUST00000165211 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043557 Mdga1 ENSMUST00000167102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043557 Mdga1 ENSMUST00000171691 ENSMUSP00000126529 TRANSLATION protein_coding - - 5 956.0 0.0 12.973 8.3 376.6 0.0 3,-2 0.9095 10 11.0 ALTERNATIVE:1 ENSMUSG00000043557 Mdga1 ENSMUST00000073556 ENSMUSP00000073246 TRANSLATION protein_coding - CCDS37540.1 5 948.0 0.0 12.775 8.3 376.6 0.0 3,-2 1.0 10 10.604 PRINCIPAL:4 ENSMUSG00000043557 Mdga1 ENSMUST00000234114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043557 Mdga1 ENSMUST00000234251 ENSMUSP00000157199 TRANSLATION protein_coding start/stop - - 159.0 0.0 2.5 0.0 96.8 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000043557 Mdga1 ENSMUST00000167190 ENSMUSP00000130395 TRANSLATION nonsense_mediated_decay - - 5 942.0 0.0 7.66 0.0 206.3 0.0 -4,-5 0.0694 4 -2.0 MINOR ENSMUSG00000043557 Mdga1 ENSMUST00000168044 ENSMUSP00000126571 TRANSLATION protein_coding start - 3 187.0 0.0 2.598 0.0 135.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000092322 Esp36 ENSMUST00000172814 ENSMUSP00000134454 TRANSLATION protein_coding - - 1 160.0 0.0 0.0 0.0 107.6 0.0 -4,-7 0.7142 - 0.0 PRINCIPAL:2 ENSMUSG00000092322 Esp36 ENSMUST00000177882 ENSMUSP00000136767 TRANSLATION protein_coding - CCDS57083.1 1 117.0 0.0 0.0 0.0 107.6 0.0 0,-5 0.2682 - 0.0 ALTERNATIVE:2 ENSMUSG00000117098 Gm49909 ENSMUST00000233357 ENSMUSP00000156883 TRANSLATION protein_coding,RT - CCDS28954.1 - 172.0 4.0 3.0 34.7 55.5 0.0 -4,-7 1.0 - -2.0 PRINCIPAL:5 ENSMUSG00000117098 Gm49909 ENSMUST00000233417 ENSMUSP00000156594 TRANSLATION protein_coding,RT - - - 172.0 4.0 3.0 34.7 49.1 0.0 -4,-2 0.8156 - -2.0 ALTERNATIVE:1 ENSMUSG00000024150 Mcfd2 ENSMUST00000151155 ENSMUSP00000119856 TRANSLATION protein_coding stop - 5 131.0 6.0 2.1 0.0 0.0 0.0 4,-1 0.0081 - -2.0 MINOR ENSMUSG00000024150 Mcfd2 ENSMUST00000144236 ENSMUSP00000121820 TRANSLATION protein_coding - CCDS29015.1 1 145.0 11.0 2.85 13.9 32.8 0.0 4,-1 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000024150 Mcfd2 ENSMUST00000139258 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024150 Mcfd2 ENSMUST00000129616 ENSMUSP00000123352 TRANSLATION protein_coding - CCDS29015.1 3 145.0 11.0 2.85 13.9 32.8 0.0 4,-1 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000024150 Mcfd2 ENSMUST00000145895 ENSMUSP00000117105 TRANSLATION protein_coding - - 2 120.0 5.0 1.35 0.0 0.0 0.0 4,-1 0.0033 - 4.842 MINOR ENSMUSG00000024150 Mcfd2 ENSMUST00000155904 ENSMUSP00000114354 TRANSLATION protein_coding stop - 2 74.0 0.0 0.6 0.0 0.0 0.0 4,-1 0.0007 - -2.0 MINOR ENSMUSG00000024150 Mcfd2 ENSMUST00000024963 ENSMUSP00000024963 TRANSLATION protein_coding - CCDS29015.1 1 145.0 11.0 2.85 13.9 32.8 0.0 4,-1 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000023935 Spats1 ENSMUST00000233583 - NO_TRANSLATION retained_intron ENSMUSG00000023935 Spats1 ENSMUST00000233769 ENSMUSP00000156469 TRANSLATION protein_coding - - - 306.0 0.0 1.0 0.0 356.9 0.0 -4,-5 0.0373 - 6.0 MINOR ENSMUSG00000023935 Spats1 ENSMUST00000233553 ENSMUSP00000156716 TRANSLATION protein_coding - - - 327.0 0.0 1.0 0.0 455.1 0.0 -4,-5 0.1047 1 8.0 ALTERNATIVE:2 ENSMUSG00000023935 Spats1 ENSMUST00000233323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023935 Spats1 ENSMUST00000024731 ENSMUSP00000024731 TRANSLATION protein_coding - CCDS50118.1 1 269.0 0.0 1.0 0.0 455.1 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:2 ENSMUSG00000044526 Znrf4 ENSMUST00000052211 ENSMUSP00000059715 TRANSLATION protein_coding - CCDS28906.1 - 327.0 8.0 0.1 0.4 42.7 0.0 4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000023991 Foxp4 ENSMUST00000136314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023991 Foxp4 ENSMUST00000153752 - NO_TRANSLATION retained_intron ENSMUSG00000023991 Foxp4 ENSMUST00000113262 ENSMUSP00000108887 TRANSLATION protein_coding - CCDS50136.1 1 673.0 4.0 4.2 1.1 213.7 0.0 -4,-5 0.4107 7 12.5 ALTERNATIVE:2 ENSMUSG00000023991 Foxp4 ENSMUST00000113265 ENSMUSP00000108890 TRANSLATION protein_coding - CCDS50135.1 1 672.0 4.0 4.2 1.1 213.7 0.0 -4,-5 0.3862 7 12.5 ALTERNATIVE:2 ENSMUSG00000023991 Foxp4 ENSMUST00000097311 ENSMUSP00000094916 TRANSLATION protein_coding - CCDS50137.1 1 685.0 4.0 4.2 1.2 213.7 0.0 -4,-5 1.0 7 13.0 PRINCIPAL:2 ENSMUSG00000023991 Foxp4 ENSMUST00000113263 ENSMUSP00000108888 TRANSLATION protein_coding - - 5 683.0 4.0 4.2 1.2 213.7 0.0 -4,-5 0.406 7 13.0 ALTERNATIVE:2 ENSMUSG00000023991 Foxp4 ENSMUST00000154108 ENSMUSP00000158631 TRANSLATION protein_coding stop - 5 113.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000023991 Foxp4 ENSMUST00000137039 - NO_TRANSLATION retained_intron ENSMUSG00000058159 T2 ENSMUST00000234809 ENSMUSP00000157191 TRANSLATION protein_coding - - - 297.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0496 - 0.0 ALTERNATIVE:2 ENSMUSG00000058159 T2 ENSMUST00000169635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058159 T2 ENSMUST00000163578 ENSMUSP00000156321 TRANSLATION protein_coding - - 5 393.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.606 - 0.0 PRINCIPAL:2 ENSMUSG00000007030 Vwa7 ENSMUST00000172499 ENSMUSP00000133418 TRANSLATION protein_coding - CCDS84299.1 1 870.0 3.0 0.0 0.0 0.0 0.0 2,-1 0.4056 6 3.0 MINOR ENSMUSG00000007030 Vwa7 ENSMUST00000007245 ENSMUSP00000007245 TRANSLATION protein_coding - CCDS28672.1 1 891.0 4.0 0.0 3.7 0.0 0.0 2,-1 1.0 6 5.0 PRINCIPAL:1 ENSMUSG00000024014 Pim1 ENSMUST00000234665 ENSMUSP00000157217 TRANSLATION protein_coding - - - 79.0 0.0 1.75 0.3 30.2 0.0 -4,-5 0.0014 - 0.0 MINOR ENSMUSG00000024014 Pim1 ENSMUST00000234263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024014 Pim1 ENSMUST00000234478 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024014 Pim1 ENSMUST00000234270 ENSMUSP00000156987 TRANSLATION protein_coding - - - 79.0 0.0 1.75 0.3 30.2 0.0 -4,-5 0.0014 - 0.0 MINOR ENSMUSG00000024014 Pim1 ENSMUST00000234294 - NO_TRANSLATION retained_intron ENSMUSG00000024014 Pim1 ENSMUST00000024811 ENSMUSP00000024811 TRANSLATION protein_coding - CCDS79520.1 1 313.0 19.0 5.25 15.2 219.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000024014 Pim1 ENSMUST00000234650 ENSMUSP00000157125 TRANSLATION protein_coding start/stop - - 195.0 17.0 2.5 0.0 121.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000673 Haao ENSMUST00000000687 ENSMUSP00000000687 TRANSLATION protein_coding - CCDS37709.1 1 286.0 3.0 8.0 17.7 253.8 0.0 -4,-7 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000000673 Haao ENSMUST00000234312 ENSMUSP00000157081 TRANSLATION nonsense_mediated_decay - - - 64.0 2.0 1.665 0.0 85.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000000673 Haao ENSMUST00000234750 - NO_TRANSLATION retained_intron ENSMUSG00000000673 Haao ENSMUST00000234863 ENSMUSP00000157168 TRANSLATION nonsense_mediated_decay - - - 69.0 0.0 0.75 0.0 26.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000000673 Haao ENSMUST00000234823 - NO_TRANSLATION retained_intron ENSMUSG00000000673 Haao ENSMUST00000234214 ENSMUSP00000157176 TRANSLATION protein_coding - - - 129.0 2.0 3.75 0.0 86.3 0.0 -4,-7 0.0 4 2.001 MINOR ENSMUSG00000083947 Or10al6 ENSMUST00000217119 ENSMUSP00000149334 TRANSLATION protein_coding - CCDS28764.2 5 321.0 0.0 1.0 6.8 194.9 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000083947 Or10al6 ENSMUST00000172582 ENSMUSP00000134283 TRANSLATION protein_coding - CCDS28764.2 2 321.0 0.0 1.0 6.8 194.9 4.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000083947 Or10al6 ENSMUST00000215449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000083947 Or10al6 ENSMUST00000119082 ENSMUSP00000113170 TRANSLATION protein_coding - - - 330.0 0.0 1.0 0.0 194.9 4.0 -4,-7 0.1144 - 12.0 MINOR ENSMUSG00000024048 Myl12a ENSMUST00000148960 ENSMUSP00000123412 TRANSLATION protein_coding - CCDS28955.1 1 172.0 7.0 3.33 34.7 50.5 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000024048 Myl12a ENSMUST00000126529 - NO_TRANSLATION retained_intron ENSMUSG00000024048 Myl12a ENSMUST00000123686 ENSMUSP00000116398 TRANSLATION protein_coding - CCDS28955.1 5 172.0 7.0 3.33 34.7 50.5 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000024048 Myl12a ENSMUST00000232766 ENSMUSP00000156508 TRANSLATION protein_coding - CCDS28955.1 - 172.0 7.0 3.33 34.7 50.5 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000024048 Myl12a ENSMUST00000233798 ENSMUSP00000156693 TRANSLATION protein_coding - CCDS28955.1 - 172.0 7.0 3.33 34.7 50.5 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000024048 Myl12a ENSMUST00000128179 ENSMUSP00000119491 TRANSLATION protein_coding stop - 2 58.0 7.0 1.0 0.0 30.6 0.0 -4,-7 0.0005 - -2.0 MINOR ENSMUSG00000024048 Myl12a ENSMUST00000024846 ENSMUSP00000024846 TRANSLATION protein_coding - CCDS28955.1 2 172.0 7.0 3.33 34.7 50.5 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000024048 Myl12a ENSMUST00000233089 ENSMUSP00000156522 TRANSLATION protein_coding - CCDS28955.1 - 172.0 7.0 3.33 34.7 50.5 0.0 -4,-2 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000024048 Myl12a ENSMUST00000129093 - NO_TRANSLATION retained_intron ENSMUSG00000024048 Myl12a ENSMUST00000150456 ENSMUSP00000114712 TRANSLATION protein_coding stop - 3 107.0 7.0 2.0 0.0 34.0 0.0 -4,-2 0.0007 2 -2.0 MINOR ENSMUSG00000035580 Kcnh8 ENSMUST00000184279 - NO_TRANSLATION retained_intron ENSMUSG00000035580 Kcnh8 ENSMUST00000039366 ENSMUSP00000049206 TRANSLATION protein_coding - CCDS57101.1 1 1102.0 0.0 8.87 15.1 216.8 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249698 ENSMUSP00000159872 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249691 ENSMUSP00000159866 TRANSLATION protein_coding - - - 84.0 0.0 2.665 0.0 59.5 0.0 -,- 0.0 10 1.17 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000249703 ENSMUSP00000159877 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249685 - NO_TRANSLATION retained_intron ENSMUSG00000015120 Ube2i ENSMUST00000249704 ENSMUSP00000159878 TRANSLATION nonsense_mediated_decay - - - 70.0 0.0 1.9 0.0 0.0 0.0 -,- 0.0 6 -2.0 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000249697 ENSMUSP00000159871 TRANSLATION protein_coding - - - 183.0 0.0 5.08 0.0 166.7 0.0 -,- 0.0116 10 12.0 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000172587 - NO_TRANSLATION retained_intron ENSMUSG00000015120 Ube2i ENSMUST00000249710 ENSMUSP00000159884 TRANSLATION protein_coding - - - 123.0 0.0 3.83 3.0 154.5 0.0 -,- 0.0628 5 8.99 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000249708 ENSMUSP00000159882 TRANSLATION protein_coding - - - 141.0 0.0 4.58 3.0 106.5 0.0 -,- 0.033 10 7.61 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000173084 ENSMUSP00000134261 TRANSLATION protein_coding - CCDS28513.1 1 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249682 ENSMUSP00000159858 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249686 ENSMUSP00000159861 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249694 ENSMUSP00000159869 TRANSLATION protein_coding - - - 141.0 0.0 4.58 3.0 106.5 0.0 -,- 0.033 10 7.61 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000249693 ENSMUSP00000159868 TRANSLATION protein_coding - - - 141.0 0.0 4.58 3.0 106.5 0.0 -,- 0.033 10 7.61 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000249701 ENSMUSP00000159875 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249707 ENSMUSP00000159881 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249689 ENSMUSP00000159864 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000173231 ENSMUSP00000133338 TRANSLATION protein_coding - CCDS28513.1 2 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249712 ENSMUSP00000159886 TRANSLATION protein_coding - - - 137.0 0.0 4.33 1.5 150.4 0.0 -,- 0.0491 10 9.578 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000249683 ENSMUSP00000159859 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249684 ENSMUSP00000159860 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249705 ENSMUSP00000159879 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249690 ENSMUSP00000159865 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249696 - NO_TRANSLATION retained_intron ENSMUSG00000015120 Ube2i ENSMUST00000049911 ENSMUSP00000055714 TRANSLATION protein_coding - CCDS28513.1 3 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249699 ENSMUSP00000159873 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000174001 ENSMUSP00000134450 TRANSLATION protein_coding - CCDS28513.1 3 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000173621 ENSMUSP00000134161 TRANSLATION protein_coding - CCDS28513.1 3 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249713 ENSMUSP00000159887 TRANSLATION protein_coding - - - 123.0 0.0 3.83 3.0 154.5 0.0 -,- 0.0628 5 8.99 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000172462 ENSMUSP00000159857 TRANSLATION protein_coding - CCDS28513.1 3 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000174031 ENSMUSP00000134350 TRANSLATION protein_coding - CCDS28513.1 1 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249692 ENSMUSP00000159867 TRANSLATION protein_coding - - - 180.0 0.0 4.33 0.0 150.9 0.0 -,- 0.0035 10 9.552 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000172520 ENSMUSP00000133311 TRANSLATION protein_coding - CCDS28513.1 3 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249695 ENSMUSP00000159870 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249681 ENSMUSP00000159856 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000172868 - NO_TRANSLATION retained_intron ENSMUSG00000015120 Ube2i ENSMUST00000249706 ENSMUSP00000159880 TRANSLATION protein_coding - - - 180.0 0.0 4.33 0.0 154.2 0.0 -,- 0.0031 10 9.75 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000249700 ENSMUSP00000159874 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249687 ENSMUSP00000159862 TRANSLATION protein_coding - - - 84.0 0.0 2.665 0.0 59.5 0.0 -,- 0.0 10 1.17 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000172569 - NO_TRANSLATION retained_intron ENSMUSG00000015120 Ube2i ENSMUST00000249709 ENSMUSP00000159883 TRANSLATION nonsense_mediated_decay - - - 122.0 0.0 3.25445 0.0 63.6 0.0 -,- 0.0 10 -2.0 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000249688 ENSMUSP00000159863 TRANSLATION protein_coding - CCDS28513.1 - 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249711 ENSMUSP00000159885 TRANSLATION protein_coding - - - 120.0 0.0 3.83 3.0 151.1 0.0 -,- 0.0675 5 8.786 MINOR ENSMUSG00000015120 Ube2i ENSMUST00000173713 ENSMUSP00000134491 TRANSLATION protein_coding - CCDS28513.1 1 158.0 0.0 5.08 36.9 166.7 0.0 -,- 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000015120 Ube2i ENSMUST00000249702 ENSMUSP00000159876 TRANSLATION protein_coding - - - 120.0 0.0 3.83 3.0 151.1 0.0 -,- 0.0675 5 8.786 MINOR ENSMUSG00000024069 Slc30a6 ENSMUST00000233799 ENSMUSP00000156452 TRANSLATION protein_coding stop - - 187.0 0.0 0.0 0.0 68.6 11.0 -4,-1 0.0028 - -2.0 MINOR ENSMUSG00000024069 Slc30a6 ENSMUST00000233157 - NO_TRANSLATION retained_intron ENSMUSG00000024069 Slc30a6 ENSMUST00000233180 - NO_TRANSLATION retained_intron ENSMUSG00000024069 Slc30a6 ENSMUST00000024870 ENSMUSP00000024870 TRANSLATION protein_coding - CCDS37691.1 1 460.0 0.0 0.0 16.1 107.7 17.0 -4,-1 1.0 6 4.0 PRINCIPAL:4 ENSMUSG00000024069 Slc30a6 ENSMUST00000234515 ENSMUSP00000157293 TRANSLATION nonsense_mediated_decay - - - 147.0 0.0 0.0 0.0 56.2 11.0 -4,-1 0.0022 - -2.0 MINOR ENSMUSG00000024069 Slc30a6 ENSMUST00000233042 ENSMUSP00000156724 TRANSLATION protein_coding - - - 104.0 0.0 0.0 0.0 0.0 4.0 -4,-1 0.0024 - 0.0 MINOR ENSMUSG00000024069 Slc30a6 ENSMUST00000179074 ENSMUSP00000136503 TRANSLATION protein_coding - CCDS57109.1 1 465.0 0.0 0.0 16.1 95.8 14.0 -4,-1 0.9486 6 4.0 ALTERNATIVE:1 ENSMUSG00000024069 Slc30a6 ENSMUST00000232866 ENSMUSP00000156552 TRANSLATION nonsense_mediated_decay start - - 140.0 0.0 0.0 0.0 69.8 11.0 -4,-1 0.0025 - -2.0 MINOR ENSMUSG00000024069 Slc30a6 ENSMUST00000235003 ENSMUSP00000157268 TRANSLATION nonsense_mediated_decay - - - 181.0 0.0 0.0 0.0 86.9 14.0 -4,-1 0.0048 1 -2.0 MINOR ENSMUSG00000040276 Pacsin1 ENSMUST00000231350 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040276 Pacsin1 ENSMUST00000232225 - NO_TRANSLATION retained_intron ENSMUSG00000040276 Pacsin1 ENSMUST00000097360 ENSMUSP00000094973 TRANSLATION protein_coding - CCDS28567.1 1 441.0 6.0 8.23 24.1 126.3 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000040276 Pacsin1 ENSMUST00000231854 - NO_TRANSLATION retained_intron ENSMUSG00000040276 Pacsin1 ENSMUST00000114872 ENSMUSP00000110522 TRANSLATION protein_coding start - 1 320.0 0.0 3.6 0.0 0.0 0.0 -4,-5 0.0007 7 -2.0 MINOR ENSMUSG00000040276 Pacsin1 ENSMUST00000114873 ENSMUSP00000110523 TRANSLATION protein_coding - CCDS28567.1 1 441.0 6.0 8.23 24.1 126.3 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000040276 Pacsin1 ENSMUST00000232437 ENSMUSP00000155999 TRANSLATION protein_coding - CCDS28567.1 - 441.0 6.0 8.23 24.1 126.3 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000040276 Pacsin1 ENSMUST00000231669 ENSMUSP00000156003 TRANSLATION protein_coding - CCDS28567.1 - 441.0 6.0 8.23 24.1 126.3 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000040276 Pacsin1 ENSMUST00000155259 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040276 Pacsin1 ENSMUST00000045896 ENSMUSP00000044168 TRANSLATION protein_coding - CCDS28567.1 1 441.0 6.0 8.23 24.1 126.3 0.0 -4,-5 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000040276 Pacsin1 ENSMUST00000231236 ENSMUSP00000155877 TRANSLATION protein_coding stop - - 109.0 6.0 2.3 0.0 69.8 0.0 -4,-5 0.0005 7 -2.0 MINOR ENSMUSG00000040490 Lrfn2 ENSMUST00000046254 ENSMUSP00000047573 TRANSLATION protein_coding - CCDS28871.1 1 788.0 0.0 1.0 8.5 167.8 0.0 2,-2 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000036315 Polr1h ENSMUST00000172823 ENSMUSP00000133644 TRANSLATION protein_coding - - 5 100.0 8.0 1.745 0.0 57.7 0.0 -4,-5 0.0035 2 17.118 MINOR ENSMUSG00000036315 Polr1h ENSMUST00000172518 ENSMUSP00000133651 TRANSLATION protein_coding - CCDS28730.1 1 123.0 8.0 2.045 13.9 57.7 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000036315 Polr1h ENSMUST00000113669 ENSMUSP00000109299 TRANSLATION protein_coding - CCDS28730.1 1 123.0 8.0 2.045 13.9 57.7 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000036315 Polr1h ENSMUST00000174466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062480 Acat3 ENSMUST00000160378 ENSMUSP00000125454 TRANSLATION protein_coding - CCDS28398.1 5 397.0 18.0 8.5 20.8 484.7 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000062480 Acat3 ENSMUST00000043923 ENSMUSP00000045912 TRANSLATION protein_coding - CCDS28398.1 1 397.0 18.0 8.5 20.8 484.7 0.0 -4,-2 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000062480 Acat3 ENSMUST00000160921 - NO_TRANSLATION retained_intron ENSMUSG00000023926 Rhag ENSMUST00000233740 ENSMUSP00000156889 TRANSLATION protein_coding - - - 396.0 5.0 7.098 0.0 260.3 16.0 -1,-5 0.0263 1 14.606 MINOR ENSMUSG00000023926 Rhag ENSMUST00000233619 ENSMUSP00000156765 TRANSLATION nonsense_mediated_decay start - - 61.0 0.0 0.3 0.0 0.0 2.0 -2,-5 0.0003 - -2.0 MINOR ENSMUSG00000023926 Rhag ENSMUST00000024721 ENSMUSP00000024721 TRANSLATION protein_coding - CCDS28787.1 1 438.0 5.0 7.914 0.0 273.0 17.0 -1,-5 1.0 2 17.0 PRINCIPAL:1 ENSMUSG00000040505 Abcg5 ENSMUST00000172439 - NO_TRANSLATION retained_intron ENSMUSG00000040505 Abcg5 ENSMUST00000163375 ENSMUSP00000130783 TRANSLATION protein_coding - - 5 480.0 8.0 8.53 0.0 139.4 5.0 -4,-7 0.0078 4 8.592 MINOR ENSMUSG00000040505 Abcg5 ENSMUST00000171544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040505 Abcg5 ENSMUST00000066175 ENSMUSP00000069495 TRANSLATION protein_coding - CCDS29001.1 1 652.0 10.0 11.53 6.7 174.0 5.0 -4,-6 1.0 6 20.0 PRINCIPAL:1 ENSMUSG00000036918 Ttc7 ENSMUST00000127970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036918 Ttc7 ENSMUST00000125875 ENSMUSP00000115351 TRANSLATION protein_coding - - 2 822.0 0.0 9.09 0.0 17.5 0.0 -4,-5 0.0562 15 8.94 MINOR ENSMUSG00000036918 Ttc7 ENSMUST00000234468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036918 Ttc7 ENSMUST00000153014 - NO_TRANSLATION retained_intron ENSMUSG00000036918 Ttc7 ENSMUST00000154255 ENSMUSP00000114181 TRANSLATION nonsense_mediated_decay start - 5 93.0 0.0 0.88 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000036918 Ttc7 ENSMUST00000148554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036918 Ttc7 ENSMUST00000144204 ENSMUSP00000122563 TRANSLATION nonsense_mediated_decay - - 5 210.0 0.0 0.86 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000036918 Ttc7 ENSMUST00000148126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036918 Ttc7 ENSMUST00000041110 ENSMUSP00000040771 TRANSLATION protein_coding - CCDS29016.1 1 858.0 0.0 8.89 11.3 35.7 0.0 -4,-5 1.0 15 14.598 PRINCIPAL:1 ENSMUSG00000036918 Ttc7 ENSMUST00000126497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052397 Ezr ENSMUST00000064234 ENSMUSP00000063734 TRANSLATION protein_coding - CCDS37428.1 1 586.0 0.0 8.758 33.8 479.1 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000052397 Ezr ENSMUST00000131131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045575 Vmn1r233 ENSMUST00000237629 ENSMUSP00000158355 TRANSLATION protein_coding - CCDS28433.1 - 319.0 0.0 0.0 0.0 81.1 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045575 Vmn1r233 ENSMUST00000237195 ENSMUSP00000158452 TRANSLATION protein_coding - CCDS28433.1 - 319.0 0.0 0.0 0.0 81.1 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045575 Vmn1r233 ENSMUST00000056339 ENSMUSP00000062473 TRANSLATION protein_coding - CCDS28433.1 - 319.0 0.0 0.0 0.0 81.1 5.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000059208 Hnrnpm ENSMUST00000153608 - NO_TRANSLATION retained_intron ENSMUSG00000059208 Hnrnpm ENSMUST00000234099 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059208 Hnrnpm ENSMUST00000234960 - NO_TRANSLATION retained_intron ENSMUSG00000059208 Hnrnpm ENSMUST00000130946 ENSMUSP00000116671 TRANSLATION protein_coding start - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000059208 Hnrnpm ENSMUST00000114385 ENSMUSP00000110027 TRANSLATION protein_coding - - 2 679.0 0.0 6.18 0.1 180.2 0.0 -4,-5 0.004 31 5.402 MINOR ENSMUSG00000059208 Hnrnpm ENSMUST00000127598 - NO_TRANSLATION retained_intron ENSMUSG00000059208 Hnrnpm ENSMUST00000139302 ENSMUSP00000115787 TRANSLATION protein_coding - - 1 640.0 0.0 5.93 0.1 180.2 0.0 -4,-5 0.004 31 4.898 MINOR ENSMUSG00000059208 Hnrnpm ENSMUST00000148258 ENSMUSP00000123580 TRANSLATION protein_coding start/stop - 3 243.0 0.0 3.08 0.0 55.0 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000059208 Hnrnpm ENSMUST00000234893 - NO_TRANSLATION retained_intron ENSMUSG00000059208 Hnrnpm ENSMUST00000148178 ENSMUSP00000120115 TRANSLATION protein_coding - CCDS37570.1 1 729.0 0.0 7.18 0.1 247.8 0.0 -4,-5 1.0 34 8.0 PRINCIPAL:2 ENSMUSG00000059208 Hnrnpm ENSMUST00000234297 ENSMUSP00000157145 TRANSLATION protein_coding start - - 123.0 0.0 1.0 0.0 23.6 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000059208 Hnrnpm ENSMUST00000234474 ENSMUSP00000157373 TRANSLATION protein_coding start/stop - - 237.0 0.0 4.1 0.0 171.8 0.0 -4,-5 0.0013 10 -2.0 MINOR ENSMUSG00000059208 Hnrnpm ENSMUST00000235089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059208 Hnrnpm ENSMUST00000087582 ENSMUSP00000084864 TRANSLATION protein_coding - CCDS50068.1 1 690.0 0.0 6.93 0.1 247.8 0.0 -4,-5 0.2444 34 7.502 ALTERNATIVE:2 ENSMUSG00000059208 Hnrnpm ENSMUST00000234043 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007035 Msh5 ENSMUST00000165329 - NO_TRANSLATION retained_intron ENSMUSG00000007035 Msh5 ENSMUST00000097338 ENSMUSP00000094951 TRANSLATION protein_coding - CCDS28674.1 1 833.0 12.0 7.342 1.8 301.5 0.0 -4,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000007035 Msh5 ENSMUST00000172491 ENSMUSP00000133415 TRANSLATION nonsense_mediated_decay - - 3 67.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000007035 Msh5 ENSMUST00000174026 ENSMUSP00000134295 TRANSLATION nonsense_mediated_decay start - 1 75.0 0.0 0.2 0.0 24.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000007035 Msh5 ENSMUST00000174603 ENSMUSP00000134065 TRANSLATION nonsense_mediated_decay - - 1 499.0 0.0 2.317 0.0 106.9 0.0 -4,-2 0.0011 - -2.0 MINOR ENSMUSG00000007035 Msh5 ENSMUST00000174556 ENSMUSP00000134061 TRANSLATION nonsense_mediated_decay - - 2 53.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000007035 Msh5 ENSMUST00000173928 - NO_TRANSLATION retained_intron ENSMUSG00000007035 Msh5 ENSMUST00000172536 ENSMUSP00000134426 TRANSLATION nonsense_mediated_decay - - 1 616.0 11.0 3.972 0.0 134.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000007035 Msh5 ENSMUST00000173124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007035 Msh5 ENSMUST00000007250 ENSMUSP00000007250 TRANSLATION protein_coding - CCDS28674.1 1 833.0 12.0 7.342 1.8 301.5 0.0 -4,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000007035 Msh5 ENSMUST00000173685 - NO_TRANSLATION retained_intron ENSMUSG00000007035 Msh5 ENSMUST00000174741 - NO_TRANSLATION retained_intron ENSMUSG00000024045 Akap8 ENSMUST00000237381 ENSMUSP00000157659 TRANSLATION nonsense_mediated_decay - - - 361.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.0018 6 -2.0 MINOR ENSMUSG00000024045 Akap8 ENSMUST00000238151 - NO_TRANSLATION retained_intron ENSMUSG00000024045 Akap8 ENSMUST00000236954 ENSMUSP00000158412 TRANSLATION nonsense_mediated_decay - - - 82.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000024045 Akap8 ENSMUST00000237860 ENSMUSP00000158289 TRANSLATION protein_coding stop - - 148.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024045 Akap8 ENSMUST00000002699 ENSMUSP00000002699 TRANSLATION protein_coding - CCDS37555.1 1 687.0 4.0 3.165 0.1 225.0 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000024045 Akap8 ENSMUST00000235360 ENSMUSP00000158225 TRANSLATION protein_coding stop - - 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024045 Akap8 ENSMUST00000236785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024045 Akap8 ENSMUST00000236761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024045 Akap8 ENSMUST00000236267 ENSMUSP00000158078 TRANSLATION nonsense_mediated_decay start - - 59.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024045 Akap8 ENSMUST00000236303 - NO_TRANSLATION retained_intron ENSMUSG00000024045 Akap8 ENSMUST00000237103 - NO_TRANSLATION retained_intron ENSMUSG00000024045 Akap8 ENSMUST00000235764 ENSMUSP00000157663 TRANSLATION nonsense_mediated_decay - - - 82.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000024045 Akap8 ENSMUST00000235702 ENSMUSP00000157462 TRANSLATION protein_coding stop - - 60.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024045 Akap8 ENSMUST00000236580 ENSMUSP00000157828 TRANSLATION protein_coding stop - - 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024045 Akap8 ENSMUST00000235205 - NO_TRANSLATION retained_intron ENSMUSG00000024045 Akap8 ENSMUST00000237733 - NO_TRANSLATION retained_intron ENSMUSG00000040356 Skic2 ENSMUST00000172803 - NO_TRANSLATION retained_intron ENSMUSG00000040356 Skic2 ENSMUST00000173305 - NO_TRANSLATION retained_intron ENSMUSG00000040356 Skic2 ENSMUST00000172878 - NO_TRANSLATION retained_intron ENSMUSG00000040356 Skic2 ENSMUST00000046022 ENSMUSP00000036265 TRANSLATION protein_coding - CCDS28661.1 1 1244.0 13.0 12.121 11.8 359.5 0.0 -4,-5 1.0 38 21.0 PRINCIPAL:1 ENSMUSG00000040356 Skic2 ENSMUST00000173403 - NO_TRANSLATION retained_intron ENSMUSG00000040356 Skic2 ENSMUST00000172686 - NO_TRANSLATION retained_intron ENSMUSG00000040356 Skic2 ENSMUST00000173415 ENSMUSP00000134209 TRANSLATION protein_coding start/stop - 3 242.0 0.0 1.891 0.0 57.8 0.0 -4,-7 0.0 12 -2.0 MINOR ENSMUSG00000040356 Skic2 ENSMUST00000172966 ENSMUSP00000134294 TRANSLATION nonsense_mediated_decay - - 5 92.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000040356 Skic2 ENSMUST00000174887 - NO_TRANSLATION retained_intron ENSMUSG00000040356 Skic2 ENSMUST00000174226 - NO_TRANSLATION retained_intron ENSMUSG00000040356 Skic2 ENSMUST00000174363 - NO_TRANSLATION retained_intron ENSMUSG00000002307 Daxx ENSMUST00000173028 ENSMUSP00000133319 TRANSLATION protein_coding stop - 3 137.0 0.0 1.2 0.0 140.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002307 Daxx ENSMUST00000173279 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002307 Daxx ENSMUST00000079421 ENSMUSP00000078390 TRANSLATION protein_coding - CCDS28633.1 1 740.0 0.0 5.3 0.0 166.7 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000002307 Daxx ENSMUST00000172859 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002307 Daxx ENSMUST00000170075 ENSMUSP00000128504 TRANSLATION protein_coding - CCDS28633.1 1 740.0 0.0 5.3 0.0 166.7 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000002307 Daxx ENSMUST00000174646 - NO_TRANSLATION retained_intron ENSMUSG00000002307 Daxx ENSMUST00000234670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002307 Daxx ENSMUST00000174146 ENSMUSP00000134158 TRANSLATION protein_coding start/stop - 1 186.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002307 Daxx ENSMUST00000174541 ENSMUSP00000133552 TRANSLATION protein_coding stop - 5 206.0 0.0 2.8 0.0 166.7 0.0 -4,-5 0.0048 3 -2.0 MINOR ENSMUSG00000002307 Daxx ENSMUST00000173626 ENSMUSP00000133303 TRANSLATION protein_coding stop - 3 166.0 0.0 1.8 0.0 166.7 0.0 -4,-5 0.0066 3 -2.0 MINOR ENSMUSG00000048440 Cyp4f16 ENSMUST00000163736 - NO_TRANSLATION retained_intron ENSMUSG00000048440 Cyp4f16 ENSMUST00000164628 - NO_TRANSLATION retained_intron ENSMUSG00000048440 Cyp4f16 ENSMUST00000237245 ENSMUSP00000158566 TRANSLATION nonsense_mediated_decay - - - 71.0 0.0 1.0 0.0 0.0 3.0 1,-2 0.0038 1 -2.0 MINOR ENSMUSG00000048440 Cyp4f16 ENSMUST00000169591 ENSMUSP00000131058 TRANSLATION protein_coding - CCDS28619.1 1 524.0 30.0 10.91 9.6 439.1 3.0 1,-2 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000048440 Cyp4f16 ENSMUST00000168346 - NO_TRANSLATION retained_intron ENSMUSG00000048440 Cyp4f16 ENSMUST00000003416 ENSMUSP00000003416 TRANSLATION protein_coding - CCDS28619.1 1 524.0 30.0 10.91 9.6 439.1 3.0 1,-2 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000048440 Cyp4f16 ENSMUST00000165515 ENSMUSP00000126845 TRANSLATION nonsense_mediated_decay - - 1 73.0 0.0 1.0 0.0 0.0 3.0 1,-2 0.0038 1 -2.0 MINOR ENSMUSG00000048440 Cyp4f16 ENSMUST00000169252 ENSMUSP00000128349 TRANSLATION nonsense_mediated_decay - - 3 71.0 0.0 1.0 0.0 0.0 3.0 1,-2 0.0038 - -2.0 MINOR ENSMUSG00000048440 Cyp4f16 ENSMUST00000170956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048440 Cyp4f16 ENSMUST00000168285 - NO_TRANSLATION retained_intron ENSMUSG00000039220 Ppp1r10 ENSMUST00000133641 - NO_TRANSLATION retained_intron ENSMUSG00000039220 Ppp1r10 ENSMUST00000151664 ENSMUSP00000138094 TRANSLATION protein_coding stop - 3 89.0 0.0 1.92 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039220 Ppp1r10 ENSMUST00000130124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039220 Ppp1r10 ENSMUST00000154856 - NO_TRANSLATION retained_intron ENSMUSG00000039220 Ppp1r10 ENSMUST00000087211 ENSMUSP00000084461 TRANSLATION protein_coding - CCDS50098.1 5 888.0 4.0 6.25 0.0 56.2 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000039220 Ppp1r10 ENSMUST00000087210 ENSMUSP00000084460 TRANSLATION protein_coding - CCDS50098.1 1 888.0 4.0 6.25 0.0 56.2 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000039220 Ppp1r10 ENSMUST00000151375 - NO_TRANSLATION retained_intron ENSMUSG00000060586 H2-Eb1 ENSMUST00000236232 ENSMUSP00000157594 TRANSLATION nonsense_mediated_decay - - - 92.0 0.0 0.264 0.0 0.0 0.0 1,-3 0.0016 - -2.0 MINOR ENSMUSG00000060586 H2-Eb1 ENSMUST00000235530 ENSMUSP00000158533 TRANSLATION protein_coding - CCDS37584.1 - 264.0 0.0 4.264 3.9 218.7 0.0 1,-3 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000060586 H2-Eb1 ENSMUST00000074557 ENSMUSP00000074143 TRANSLATION protein_coding start - 1 287.0 0.0 3.304 0.0 218.7 0.0 -4,-6 0.0071 8 -2.0 MINOR ENSMUSG00000060586 H2-Eb1 ENSMUST00000235729 - NO_TRANSLATION retained_intron ENSMUSG00000060586 H2-Eb1 ENSMUST00000235501 - NO_TRANSLATION retained_intron ENSMUSG00000037334 H2-M1 ENSMUST00000041662 ENSMUSP00000040435 TRANSLATION protein_coding - CCDS37612.1 1 344.0 0.0 4.0 0.0 211.9 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000023805 Synj2 ENSMUST00000061091 ENSMUSP00000060382 TRANSLATION protein_coding - CCDS28365.1 1 1216.0 2.0 12.392 0.0 440.5 1.0 -4,-5 0.2126 14 9.022 MINOR ENSMUSG00000023805 Synj2 ENSMUST00000115789 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023805 Synj2 ENSMUST00000080283 ENSMUSP00000079164 TRANSLATION protein_coding - CCDS49932.1 1 1434.0 2.0 12.882 0.4 455.5 1.0 -4,-7 0.5403 16 10.0 ALTERNATIVE:2 ENSMUSG00000023805 Synj2 ENSMUST00000126881 ENSMUSP00000115371 TRANSLATION protein_coding start - 5 384.0 0.0 2.43 0.0 203.3 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000023805 Synj2 ENSMUST00000115791 ENSMUSP00000111457 TRANSLATION protein_coding - CCDS49931.1 1 1479.0 2.0 12.882 0.4 455.5 1.0 -4,-7 1.0 18 10.0 PRINCIPAL:2 ENSMUSG00000023805 Synj2 ENSMUST00000115788 - NO_TRANSLATION retained_intron ENSMUSG00000023805 Synj2 ENSMUST00000115784 - NO_TRANSLATION retained_intron ENSMUSG00000023805 Synj2 ENSMUST00000142409 ENSMUSP00000120006 TRANSLATION protein_coding stop - 1 660.0 2.0 9.41 0.0 162.5 1.0 -4,-5 0.0024 8 -2.0 MINOR ENSMUSG00000023805 Synj2 ENSMUST00000130661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023805 Synj2 ENSMUST00000115786 ENSMUSP00000111452 TRANSLATION protein_coding - - 1 535.0 2.0 7.13 0.0 85.6 1.0 -4,-5 0.0 6 2.0 MINOR ENSMUSG00000023805 Synj2 ENSMUST00000115790 ENSMUSP00000111456 TRANSLATION protein_coding - - 5 1394.0 2.0 12.392 0.0 439.9 1.0 -4,-5 0.0926 16 9.022 MINOR ENSMUSG00000023805 Synj2 ENSMUST00000115787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023805 Synj2 ENSMUST00000232567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023805 Synj2 ENSMUST00000134767 ENSMUSP00000138449 TRANSLATION nonsense_mediated_decay - - 1 84.0 0.0 0.74 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000023805 Synj2 ENSMUST00000115785 ENSMUSP00000111451 TRANSLATION protein_coding - CCDS70757.1 1 1118.0 2.0 10.11 0.0 235.8 1.0 -4,-5 0.0548 12 4.456 MINOR ENSMUSG00000023805 Synj2 ENSMUST00000154114 ENSMUSP00000122316 TRANSLATION protein_coding start - 5 725.0 2.0 7.78 0.0 237.3 1.0 -4,-6 0.003 7 -2.0 MINOR ENSMUSG00000034786 Gpsm3 ENSMUST00000173772 ENSMUSP00000134130 TRANSLATION protein_coding start - 3 55.0 0.0 0.0 0.0 34.0 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000034786 Gpsm3 ENSMUST00000038244 ENSMUSP00000045911 TRANSLATION protein_coding - CCDS37589.1 1 159.0 0.0 0.0 6.1 62.6 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000034786 Gpsm3 ENSMUST00000150924 ENSMUSP00000134586 TRANSLATION nonsense_mediated_decay - - 1 48.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079700 Fpr3 ENSMUST00000054871 ENSMUSP00000093316 TRANSLATION protein_coding - CCDS28420.1 1 351.0 0.0 1.0 6.2 125.8 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079700 Fpr3 ENSMUST00000115565 ENSMUSP00000111227 TRANSLATION protein_coding - CCDS28420.1 - 351.0 0.0 1.0 6.2 125.8 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024043 Arhgap28 ENSMUST00000170813 ENSMUSP00000132087 TRANSLATION nonsense_mediated_decay start - 5 208.0 0.0 2.025 0.0 82.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024043 Arhgap28 ENSMUST00000170581 ENSMUSP00000131903 TRANSLATION protein_coding start/stop - 5 235.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024043 Arhgap28 ENSMUST00000024840 ENSMUSP00000024840 TRANSLATION protein_coding - CCDS28950.1 1 729.0 0.0 2.775 0.4 129.7 0.0 -4,-5 0.3709 5 12.0 MINOR ENSMUSG00000024043 Arhgap28 ENSMUST00000163865 ENSMUSP00000130960 TRANSLATION protein_coding - CCDS84329.1 5 678.0 0.0 2.775 4.2 122.1 0.0 -4,-6 1.0 5 13.544 PRINCIPAL:1 ENSMUSG00000024043 Arhgap28 ENSMUST00000164647 ENSMUSP00000128194 TRANSLATION protein_coding - - 5 679.0 0.0 2.775 0.0 129.7 0.0 -4,-6 0.393 5 12.0 MINOR ENSMUSG00000024053 Emilin2 ENSMUST00000232777 ENSMUSP00000156894 TRANSLATION protein_coding - - - 1063.0 0.0 2.068 0.0 96.0 0.0 2,-2 0.1735 16 7.322 ALTERNATIVE:2 ENSMUSG00000024053 Emilin2 ENSMUST00000233728 ENSMUSP00000156732 TRANSLATION protein_coding stop - - 98.0 0.0 0.0 0.0 37.3 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000024053 Emilin2 ENSMUST00000233698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024053 Emilin2 ENSMUST00000233083 - NO_TRANSLATION retained_intron ENSMUSG00000024053 Emilin2 ENSMUST00000233245 ENSMUSP00000156676 TRANSLATION protein_coding - - - 993.0 0.0 2.332 0.0 79.1 0.0 -4,-1 0.0749 16 6.0 MINOR ENSMUSG00000024053 Emilin2 ENSMUST00000233659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024053 Emilin2 ENSMUST00000233057 ENSMUSP00000156446 TRANSLATION protein_coding - CCDS37686.1 - 1074.0 0.0 2.332 0.0 100.0 0.0 2,-2 1.0 16 8.0 PRINCIPAL:2 ENSMUSG00000024053 Emilin2 ENSMUST00000233148 ENSMUSP00000156837 TRANSLATION protein_coding stop - - 122.0 0.0 2.012 0.0 37.9 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000024053 Emilin2 ENSMUST00000233343 ENSMUSP00000156856 TRANSLATION protein_coding stop - - 95.0 0.0 0.0 0.0 34.3 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000024053 Emilin2 ENSMUST00000024849 ENSMUSP00000024849 TRANSLATION protein_coding - - 1 1073.0 0.0 2.332 0.0 100.0 0.0 2,-2 0.6824 16 8.0 ALTERNATIVE:2 ENSMUSG00000024053 Emilin2 ENSMUST00000233677 - NO_TRANSLATION retained_intron ENSMUSG00000041754 Trem3 ENSMUST00000048065 ENSMUSP00000044478 TRANSLATION protein_coding - CCDS28861.1 1 183.0 0.0 1.8 0.1 32.1 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000068037 Mas1 ENSMUST00000167152 ENSMUSP00000131341 TRANSLATION protein_coding - CCDS28394.1 5 324.0 0.0 1.82375 9.1 54.9 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068037 Mas1 ENSMUST00000162333 ENSMUSP00000125108 TRANSLATION protein_coding - CCDS28394.1 1 324.0 0.0 1.82375 9.1 54.9 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068037 Mas1 ENSMUST00000161747 ENSMUSP00000123902 TRANSLATION protein_coding - CCDS28394.1 1 324.0 0.0 1.82375 9.1 54.9 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068037 Mas1 ENSMUST00000089015 ENSMUSP00000086409 TRANSLATION protein_coding - CCDS28394.1 1 324.0 0.0 1.82375 9.1 54.9 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068037 Mas1 ENSMUST00000233607 ENSMUSP00000156871 TRANSLATION protein_coding - CCDS28394.1 - 324.0 0.0 1.82375 9.1 54.9 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068037 Mas1 ENSMUST00000159865 ENSMUSP00000124901 TRANSLATION protein_coding stop - 1 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068037 Mas1 ENSMUST00000162119 ENSMUSP00000124952 TRANSLATION protein_coding stop - 3 110.0 0.0 0.78975 0.0 0.0 4.0 -4,-7 0.0026 - -2.0 MINOR ENSMUSG00000068037 Mas1 ENSMUST00000165020 ENSMUSP00000132300 TRANSLATION protein_coding - CCDS28394.1 5 324.0 0.0 1.82375 9.1 54.9 8.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000068037 Mas1 ENSMUST00000159223 ENSMUSP00000124295 TRANSLATION protein_coding stop - 3 72.0 0.0 0.72375 0.0 0.0 2.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000068037 Mas1 ENSMUST00000162389 ENSMUSP00000124879 TRANSLATION protein_coding stop - 3 76.0 0.0 0.72375 0.0 0.0 2.0 -4,-2 0.0002 - -2.0 MINOR ENSMUSG00000024206 Rfx2 ENSMUST00000233624 - NO_TRANSLATION retained_intron ENSMUSG00000024206 Rfx2 ENSMUST00000002444 ENSMUSP00000002444 TRANSLATION protein_coding - CCDS50156.1 1 717.0 0.0 1.5 4.7 276.5 0.0 -4,-6 1.0 4 10.0 PRINCIPAL:4 ENSMUSG00000024206 Rfx2 ENSMUST00000233000 ENSMUSP00000156913 TRANSLATION protein_coding stop - - 226.0 0.0 1.5 0.0 246.2 0.0 -4,-7 0.0297 2 -2.0 MINOR ENSMUSG00000024206 Rfx2 ENSMUST00000086801 ENSMUSP00000084010 TRANSLATION protein_coding - CCDS28915.1 1 692.0 0.0 1.5 3.1 280.8 0.0 -4,-6 0.8378 4 9.136 ALTERNATIVE:2 ENSMUSG00000024206 Rfx2 ENSMUST00000233643 - NO_TRANSLATION retained_intron ENSMUSG00000055945 Prr18 ENSMUST00000163887 ENSMUSP00000127393 TRANSLATION protein_coding - CCDS28382.1 3 307.0 0.0 0.0 0.4 450.5 0.0 -4,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000055945 Prr18 ENSMUST00000069742 ENSMUSP00000069019 TRANSLATION protein_coding - CCDS28382.1 1 307.0 0.0 0.0 0.4 450.5 0.0 -4,-2 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000055945 Prr18 ENSMUST00000232566 ENSMUSP00000155995 TRANSLATION protein_coding stop - - 117.0 0.0 0.0 0.0 88.8 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000079547 H2-DMb1 ENSMUST00000114232 ENSMUSP00000109870 TRANSLATION protein_coding - CCDS37581.1 1 261.0 0.0 3.3 0.9 170.4 0.0 2,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000079547 H2-DMb1 ENSMUST00000174765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079547 H2-DMb1 ENSMUST00000173262 - NO_TRANSLATION retained_intron ENSMUSG00000002668 Dennd1c ENSMUST00000233564 ENSMUSP00000156614 TRANSLATION nonsense_mediated_decay - - - 61.0 0.0 1.648 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000002668 Dennd1c ENSMUST00000011623 ENSMUSP00000011623 TRANSLATION protein_coding - CCDS37669.1 1 786.0 0.0 9.823 0.0 219.5 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000002668 Dennd1c ENSMUST00000233650 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002668 Dennd1c ENSMUST00000233674 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002668 Dennd1c ENSMUST00000232685 - NO_TRANSLATION retained_intron ENSMUSG00000002668 Dennd1c ENSMUST00000233234 - NO_TRANSLATION retained_intron ENSMUSG00000002668 Dennd1c ENSMUST00000232938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079580 Tmem217 ENSMUST00000234648 ENSMUSP00000157018 TRANSLATION protein_coding - - - 173.0 0.0 0.0 0.0 154.6 5.0 -4,-2 0.0037 - 3.408 MINOR ENSMUSG00000079580 Tmem217 ENSMUST00000234979 ENSMUSP00000156979 TRANSLATION protein_coding - CCDS50050.1 - 189.0 0.0 0.0 6.0 197.8 6.0 -2,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000079580 Tmem217 ENSMUST00000168339 ENSMUSP00000132463 TRANSLATION protein_coding - CCDS50050.1 1 189.0 0.0 0.0 6.0 197.8 6.0 -2,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000079580 Tmem217 ENSMUST00000235062 ENSMUSP00000157370 TRANSLATION protein_coding - CCDS50050.1 - 189.0 0.0 0.0 6.0 197.8 6.0 -2,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000079580 Tmem217 ENSMUST00000114683 ENSMUSP00000110331 TRANSLATION protein_coding - CCDS50050.1 1 189.0 0.0 0.0 6.0 197.8 6.0 -2,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000079580 Tmem217 ENSMUST00000234718 ENSMUSP00000157082 TRANSLATION protein_coding - CCDS50050.1 - 189.0 0.0 0.0 6.0 197.8 6.0 -2,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000079580 Tmem217 ENSMUST00000234176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079580 Tmem217 ENSMUST00000234620 ENSMUSP00000157021 TRANSLATION protein_coding - - - 116.0 0.0 0.0 0.0 120.5 3.0 -2,-5 0.0024 - 1.362 MINOR ENSMUSG00000062464 Cyp4f37 ENSMUST00000235101 - NO_TRANSLATION retained_intron ENSMUSG00000062464 Cyp4f37 ENSMUST00000077639 ENSMUSP00000076827 TRANSLATION protein_coding - CCDS37558.1 1 546.0 30.0 10.75 0.0 451.1 0.0 1,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000023930 Crisp2 ENSMUST00000233529 ENSMUSP00000156818 TRANSLATION protein_coding - CCDS28786.1 - 243.0 2.0 6.0 7.4 145.5 0.0 4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000023930 Crisp2 ENSMUST00000024724 ENSMUSP00000024724 TRANSLATION protein_coding - CCDS28786.1 1 243.0 2.0 6.0 7.4 145.5 0.0 4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000023930 Crisp2 ENSMUST00000131699 ENSMUSP00000115730 TRANSLATION protein_coding - - 1 100.0 1.0 2.165 0.0 24.0 0.0 4,-1 0.0 2 1.0 MINOR ENSMUSG00000023930 Crisp2 ENSMUST00000233679 ENSMUSP00000156388 TRANSLATION nonsense_mediated_decay - - - 172.0 2.0 4.0 0.0 79.8 0.0 4,-1 0.0004 3 -2.0 MINOR ENSMUSG00000023930 Crisp2 ENSMUST00000232709 ENSMUSP00000156411 TRANSLATION protein_coding - CCDS28786.1 - 243.0 2.0 6.0 7.4 145.5 0.0 4,-1 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000023930 Crisp2 ENSMUST00000141204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023930 Crisp2 ENSMUST00000144243 ENSMUSP00000114224 TRANSLATION protein_coding stop - 3 171.0 2.0 4.0 0.0 79.8 0.0 4,-1 0.0004 3 -2.0 MINOR ENSMUSG00000023930 Crisp2 ENSMUST00000124399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023987 Pgc ENSMUST00000024782 ENSMUSP00000024782 TRANSLATION protein_coding - CCDS28855.1 1 392.0 5.0 8.0 17.5 442.4 0.0 4,-1 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000023987 Pgc ENSMUST00000144955 ENSMUSP00000123459 TRANSLATION protein_coding stop - 5 142.0 0.0 2.0 0.0 111.5 0.0 4,-1 0.0 - -2.0 MINOR ENSMUSG00000057863 Rpl36 ENSMUST00000080492 ENSMUSP00000079340 TRANSLATION protein_coding - CCDS37665.1 1 105.0 0.0 2.75 12.2 175.4 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000072968 Gm17728 ENSMUST00000076982 ENSMUSP00000125941 TRANSLATION protein_coding - - - 132.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5812 - 0.0 PRINCIPAL:1 ENSMUSG00000033826 Dnah8 ENSMUST00000237436 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000235567 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000235390 ENSMUSP00000158051 TRANSLATION protein_coding - CCDS37541.1 - 4731.0 62.0 52.2035 0.3 2955.9 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000033826 Dnah8 ENSMUST00000237892 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000237068 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000236870 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000237458 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000236647 ENSMUSP00000158125 TRANSLATION nonsense_mediated_decay start - - 85.0 0.0 0.16 0.0 0.0 0.0 -4,-2 0.0008 - -2.0 MINOR ENSMUSG00000033826 Dnah8 ENSMUST00000235627 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000236118 ENSMUSP00000158447 TRANSLATION protein_coding stop - - 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 1 -2.0 MINOR ENSMUSG00000033826 Dnah8 ENSMUST00000236140 ENSMUSP00000157469 TRANSLATION protein_coding - CCDS37541.1 - 4731.0 62.0 52.2035 0.3 2955.9 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000033826 Dnah8 ENSMUST00000237591 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033826 Dnah8 ENSMUST00000235136 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000235507 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000236829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033826 Dnah8 ENSMUST00000170651 ENSMUSP00000127878 TRANSLATION protein_coding - CCDS37541.1 1 4731.0 62.0 52.2035 0.3 2955.9 0.0 -4,-5 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000033826 Dnah8 ENSMUST00000237551 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000237094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033826 Dnah8 ENSMUST00000235388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033826 Dnah8 ENSMUST00000236948 ENSMUSP00000157549 TRANSLATION protein_coding start - - 288.0 0.0 4.25 0.0 289.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033826 Dnah8 ENSMUST00000237432 - NO_TRANSLATION retained_intron ENSMUSG00000033826 Dnah8 ENSMUST00000235140 - NO_TRANSLATION retained_intron ENSMUSG00000090113 Nhlrc4 ENSMUST00000159540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090113 Nhlrc4 ENSMUST00000162078 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090113 Nhlrc4 ENSMUST00000085027 ENSMUSP00000082102 TRANSLATION protein_coding - CCDS28539.1 1 136.0 0.0 1.0 0.0 23.0 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046201 Scaf8 ENSMUST00000232079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046201 Scaf8 ENSMUST00000076734 ENSMUSP00000076024 TRANSLATION protein_coding - CCDS49927.1 1 1268.0 0.0 5.026 7.3 97.8 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000046201 Scaf8 ENSMUST00000232048 ENSMUSP00000156084 TRANSLATION protein_coding stop - - 110.0 0.0 2.58 0.0 38.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000014771 Pdcd2 ENSMUST00000232149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014771 Pdcd2 ENSMUST00000054450 ENSMUSP00000052523 TRANSLATION protein_coding - CCDS28413.1 1 343.0 7.0 0.2 6.7 179.4 0.0 -4,-5 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000014771 Pdcd2 ENSMUST00000139610 - NO_TRANSLATION retained_intron ENSMUSG00000014771 Pdcd2 ENSMUST00000137233 - NO_TRANSLATION retained_intron ENSMUSG00000014771 Pdcd2 ENSMUST00000154293 ENSMUSP00000118625 TRANSLATION protein_coding - - 1 258.0 7.0 0.2 0.0 33.3 0.0 -4,-5 0.0282 2 12.0 MINOR ENSMUSG00000014771 Pdcd2 ENSMUST00000125709 - NO_TRANSLATION retained_intron ENSMUSG00000071202 Ccdc78 ENSMUST00000095500 ENSMUSP00000093155 TRANSLATION protein_coding - CCDS50035.1 5 437.0 0.0 0.0 0.0 70.8 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000071202 Ccdc78 ENSMUST00000235405 - NO_TRANSLATION retained_intron ENSMUSG00000094024 Esp18 ENSMUST00000179848 ENSMUSP00000135980 TRANSLATION protein_coding - CCDS57088.1 5 91.0 0.0 0.0 0.0 97.5 0.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000071172 Srsf3 ENSMUST00000147265 - NO_TRANSLATION retained_intron ENSMUSG00000071172 Srsf3 ENSMUST00000233127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071172 Srsf3 ENSMUST00000130216 ENSMUSP00000117045 TRANSLATION protein_coding - CCDS28590.1 1 164.0 0.0 1.6 27.9 65.8 0.0 -4,-5 1.0 7 15.544 PRINCIPAL:1 ENSMUSG00000071172 Srsf3 ENSMUST00000144551 - NO_TRANSLATION retained_intron ENSMUSG00000071172 Srsf3 ENSMUST00000233885 - NO_TRANSLATION retained_intron ENSMUSG00000071172 Srsf3 ENSMUST00000150157 - NO_TRANSLATION retained_intron ENSMUSG00000071172 Srsf3 ENSMUST00000037776 ENSMUSP00000049025 TRANSLATION nonsense_mediated_decay - - 1 124.0 0.0 1.732 0.0 65.8 0.0 -4,-5 0.0124 7 -2.0 MINOR ENSMUSG00000071172 Srsf3 ENSMUST00000233105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071172 Srsf3 ENSMUST00000233010 ENSMUSP00000156504 TRANSLATION nonsense_mediated_decay start - - 11.0 0.0 0.132 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000071172 Srsf3 ENSMUST00000233209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024254 Abcg8 ENSMUST00000045714 ENSMUSP00000035246 TRANSLATION protein_coding - CCDS29002.1 1 673.0 15.0 9.44 5.7 218.1 7.0 -4,-5 1.0 5 16.0 PRINCIPAL:4 ENSMUSG00000024254 Abcg8 ENSMUST00000170725 ENSMUSP00000127785 TRANSLATION protein_coding - CCDS70849.1 1 546.0 6.0 7.54 0.3 180.3 7.0 -4,-7 0.0246 3 4.202 MINOR ENSMUSG00000024254 Abcg8 ENSMUST00000171915 ENSMUSP00000126675 TRANSLATION protein_coding - CCDS84337.1 1 672.0 15.0 9.44 5.7 218.1 7.0 -4,-5 0.9985 5 16.0 ALTERNATIVE:1 ENSMUSG00000090588 Muc21 ENSMUST00000173759 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090588 Muc21 ENSMUST00000164502 ENSMUSP00000130987 TRANSLATION protein_coding - CCDS57077.1 5 1606.0 0.0 0.2 0.0 66.1 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000067150 Xpo5 ENSMUST00000232971 - NO_TRANSLATION retained_intron ENSMUSG00000067150 Xpo5 ENSMUST00000087031 ENSMUSP00000084257 TRANSLATION protein_coding - CCDS37631.1 1 1204.0 0.0 22.41 12.4 110.9 0.0 -4,-6 1.0 24 15.0 PRINCIPAL:1 ENSMUSG00000067150 Xpo5 ENSMUST00000233340 - NO_TRANSLATION retained_intron ENSMUSG00000063239 Grm4 ENSMUST00000146277 - NO_TRANSLATION retained_intron ENSMUSG00000063239 Grm4 ENSMUST00000118489 ENSMUSP00000112578 TRANSLATION protein_coding - CCDS28563.1 1 832.0 20.0 8.77 0.0 611.8 8.0 3,-1 0.1752 11 16.536 MINOR ENSMUSG00000063239 Grm4 ENSMUST00000231290 ENSMUSP00000156001 TRANSLATION protein_coding - CCDS70775.1 - 912.0 20.0 9.09 13.9 625.5 8.0 3,-1 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000063239 Grm4 ENSMUST00000147865 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063239 Grm4 ENSMUST00000232243 ENSMUSP00000156112 TRANSLATION nonsense_mediated_decay - - - 181.0 10.0 1.0 0.0 76.4 0.0 3,-1 0.0 2 -2.0 MINOR ENSMUSG00000063239 Grm4 ENSMUST00000118161 ENSMUSP00000113819 TRANSLATION protein_coding - CCDS70775.1 5 912.0 20.0 9.09 13.9 625.5 8.0 3,-1 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000063239 Grm4 ENSMUST00000231416 ENSMUSP00000156277 TRANSLATION protein_coding - - - 657.0 6.0 6.29 0.0 456.8 8.0 -4,-5 0.0046 11 0.402 MINOR ENSMUSG00000063239 Grm4 ENSMUST00000231809 ENSMUSP00000156352 TRANSLATION protein_coding - - - 865.0 20.0 8.29 2.5 614.2 8.0 3,-1 0.1478 15 16.184 MINOR ENSMUSG00000014763 Fam120b ENSMUST00000231318 - NO_TRANSLATION retained_intron ENSMUSG00000014763 Fam120b ENSMUST00000231274 - NO_TRANSLATION retained_intron ENSMUSG00000014763 Fam120b ENSMUST00000055352 ENSMUSP00000054420 TRANSLATION protein_coding - CCDS37453.1 1 786.0 0.0 0.0 0.4 0.0 0.0 -4,-7 0.9298 15 0.0 PRINCIPAL:1 ENSMUSG00000051390 Zbtb22 ENSMUST00000174463 ENSMUSP00000133345 TRANSLATION protein_coding stop - 3 86.0 0.0 0.8 0.0 51.0 0.0 -3,-6 0.021 1 -2.0 MINOR ENSMUSG00000051390 Zbtb22 ENSMUST00000053429 ENSMUSP00000057466 TRANSLATION protein_coding - CCDS28634.1 1 638.0 11.0 0.8 2.2 86.3 0.0 -3,-6 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000024037 Wdr4 ENSMUST00000167419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024037 Wdr4 ENSMUST00000166992 - NO_TRANSLATION retained_intron ENSMUSG00000024037 Wdr4 ENSMUST00000236665 ENSMUSP00000157778 TRANSLATION protein_coding start - - 426.0 0.0 3.849 0.0 13.6 0.0 -3,0 0.0834 9 -2.0 MINOR ENSMUSG00000024037 Wdr4 ENSMUST00000170176 ENSMUSP00000127073 TRANSLATION nonsense_mediated_decay start - 1 107.0 0.0 1.15 0.0 0.0 0.0 -2,-5 0.0004 1 -2.0 MINOR ENSMUSG00000024037 Wdr4 ENSMUST00000171592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024037 Wdr4 ENSMUST00000172284 ENSMUSP00000129736 TRANSLATION nonsense_mediated_decay start - 1 102.0 0.0 0.95 0.0 0.0 0.0 -3,-6 0.0004 - -2.0 MINOR ENSMUSG00000024037 Wdr4 ENSMUST00000171171 ENSMUSP00000126061 TRANSLATION protein_coding - CCDS28606.2 1 456.0 0.0 3.849 0.1 13.6 0.0 -4,0 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000024037 Wdr4 ENSMUST00000236913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024037 Wdr4 ENSMUST00000237127 ENSMUSP00000158546 TRANSLATION protein_coding start/stop - - 120.0 0.0 1.75 0.0 0.0 0.0 -4,-7 0.0316 2 -2.0 MINOR ENSMUSG00000024037 Wdr4 ENSMUST00000171291 ENSMUSP00000132290 TRANSLATION protein_coding stop - 3 46.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0004 - -2.0 MINOR ENSMUSG00000024037 Wdr4 ENSMUST00000237807 ENSMUSP00000157734 TRANSLATION protein_coding stop - - 33.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0006 - -2.0 MINOR ENSMUSG00000024037 Wdr4 ENSMUST00000169224 - NO_TRANSLATION retained_intron ENSMUSG00000024037 Wdr4 ENSMUST00000169454 - NO_TRANSLATION retained_intron ENSMUSG00000024037 Wdr4 ENSMUST00000166626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023800 Tiam2 ENSMUST00000226913 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023800 Tiam2 ENSMUST00000226434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023800 Tiam2 ENSMUST00000169838 ENSMUSP00000125842 TRANSLATION protein_coding - CCDS37421.1 1 1715.0 0.0 12.1 0.4 240.5 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000023800 Tiam2 ENSMUST00000227604 ENSMUSP00000154627 TRANSLATION protein_coding stop - - 177.0 0.0 3.38 0.0 84.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000023800 Tiam2 ENSMUST00000226905 - NO_TRANSLATION retained_intron ENSMUSG00000023800 Tiam2 ENSMUST00000226997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023800 Tiam2 ENSMUST00000072156 ENSMUSP00000072020 TRANSLATION protein_coding - CCDS37421.1 1 1715.0 0.0 12.1 0.4 240.5 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000023800 Tiam2 ENSMUST00000227405 ENSMUSP00000154598 TRANSLATION nonsense_mediated_decay start - - 142.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000023800 Tiam2 ENSMUST00000226748 - NO_TRANSLATION retained_intron ENSMUSG00000024122 Pdpk1 ENSMUST00000115407 ENSMUSP00000111066 TRANSLATION protein_coding - - 5 457.0 20.0 8.95 1.0 228.5 0.0 -4,-7 0.0194 9 2.84 MINOR ENSMUSG00000024122 Pdpk1 ENSMUST00000102927 ENSMUSP00000099991 TRANSLATION protein_coding - CCDS28474.1 1 559.0 26.0 11.78 6.9 377.1 0.0 -4,-7 0.7832 13 16.214 PRINCIPAL:3 ENSMUSG00000024122 Pdpk1 ENSMUST00000154982 ENSMUSP00000115618 TRANSLATION protein_coding stop - 2 111.0 9.0 1.95 0.0 29.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000024122 Pdpk1 ENSMUST00000144533 ENSMUSP00000121771 TRANSLATION protein_coding stop - 2 128.0 10.0 2.45 0.0 46.9 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000024122 Pdpk1 ENSMUST00000147199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024122 Pdpk1 ENSMUST00000128997 ENSMUSP00000120548 TRANSLATION protein_coding stop - 2 56.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000024122 Pdpk1 ENSMUST00000150578 - NO_TRANSLATION retained_intron ENSMUSG00000024122 Pdpk1 ENSMUST00000052462 ENSMUSP00000061942 TRANSLATION protein_coding - CCDS70767.1 1 532.0 26.0 11.78 9.0 377.1 0.0 -4,-7 1.0 12 17.0 ALTERNATIVE:1 ENSMUSG00000024122 Pdpk1 ENSMUST00000115411 ENSMUSP00000111070 TRANSLATION protein_coding - CCDS37483.1 1 522.0 25.0 10.45 0.0 330.1 0.0 -4,-7 0.0611 11 9.176 MINOR ENSMUSG00000024122 Pdpk1 ENSMUST00000115409 ENSMUSP00000111068 TRANSLATION protein_coding - - 5 432.0 13.0 8.53 1.0 210.9 0.0 -4,-7 0.0144 9 1.5 MINOR ENSMUSG00000024122 Pdpk1 ENSMUST00000140906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091586 Cyp4f17 ENSMUST00000165999 ENSMUSP00000129514 TRANSLATION protein_coding - CCDS50059.1 5 524.0 30.0 10.75 8.9 446.1 0.0 1,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000091586 Cyp4f17 ENSMUST00000235238 ENSMUSP00000157831 TRANSLATION protein_coding stop - - 177.0 5.0 3.5 0.0 58.8 0.0 1,-2 0.0018 1 -2.0 MINOR ENSMUSG00000091586 Cyp4f17 ENSMUST00000236129 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091586 Cyp4f17 ENSMUST00000237003 ENSMUSP00000157447 TRANSLATION protein_coding - CCDS50059.1 - 524.0 30.0 10.75 8.9 446.1 0.0 1,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000024253 Dync2li1 ENSMUST00000025101 ENSMUSP00000025101 TRANSLATION protein_coding - CCDS29000.1 1 351.0 19.0 6.45 11.8 32.7 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000024253 Dync2li1 ENSMUST00000234861 - NO_TRANSLATION retained_intron ENSMUSG00000063660 Or1o3 ENSMUST00000080759 ENSMUSP00000094936 TRANSLATION protein_coding - CCDS28742.1 - 309.0 0.0 1.0 2.2 177.9 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000096847 Tmem151b ENSMUST00000180252 ENSMUSP00000136337 TRANSLATION protein_coding - CCDS28810.1 1 561.0 0.0 0.6 0.4 708.9 0.0 -4,-6 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000095677 Dynlt1f ENSMUST00000232452 - NO_TRANSLATION retained_intron ENSMUSG00000095677 Dynlt1f ENSMUST00000179554 ENSMUSP00000135978 TRANSLATION protein_coding - CCDS57043.1 1 113.0 0.0 3.33 36.9 110.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000117311 Esp22 ENSMUST00000233133 ENSMUSP00000156441 TRANSLATION protein_coding - - - 111.0 0.0 0.0 0.0 92.7 0.0 1,-2 0.7292 - 6.0 PRINCIPAL:1 ENSMUSG00000043747 Grep1 ENSMUST00000177300 - NO_TRANSLATION retained_intron ENSMUSG00000043747 Grep1 ENSMUST00000176095 - NO_TRANSLATION retained_intron ENSMUSG00000043747 Grep1 ENSMUST00000201734 ENSMUSP00000144664 TRANSLATION protein_coding - - 5 598.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.6614 - 0.0 PRINCIPAL:1 ENSMUSG00000043747 Grep1 ENSMUST00000062827 - NO_TRANSLATION retained_intron ENSMUSG00000091491 Vmn2r97 ENSMUST00000232219 ENSMUSP00000156141 TRANSLATION protein_coding - - - 567.0 2.0 2.41 0.0 182.0 0.0 -2,-7 0.0004 - 7.548 MINOR ENSMUSG00000091491 Vmn2r97 ENSMUST00000232325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091491 Vmn2r97 ENSMUST00000240720 ENSMUSP00000159513 TRANSLATION protein_coding - - - 857.0 4.0 2.808 0.1 387.1 6.0 -2,-7 0.3302 - 11.994 ALTERNATIVE:2 ENSMUSG00000091491 Vmn2r97 ENSMUST00000168710 ENSMUSP00000129313 TRANSLATION protein_coding - CCDS49975.1 5 861.0 4.0 2.81 0.1 387.1 6.0 -2,-7 1.0 - 12.0 PRINCIPAL:2 ENSMUSG00000002833 Hdgfl2 ENSMUST00000226035 - NO_TRANSLATION retained_intron ENSMUSG00000002833 Hdgfl2 ENSMUST00000224701 - NO_TRANSLATION retained_intron ENSMUSG00000002833 Hdgfl2 ENSMUST00000225208 - NO_TRANSLATION retained_intron ENSMUSG00000002833 Hdgfl2 ENSMUST00000226053 ENSMUSP00000152948 TRANSLATION protein_coding - CCDS28894.1 - 669.0 0.0 4.85 0.3 150.2 0.0 -4,-5 0.7425 12 8.0 ALTERNATIVE:2 ENSMUSG00000002833 Hdgfl2 ENSMUST00000225342 - NO_TRANSLATION retained_intron ENSMUSG00000002833 Hdgfl2 ENSMUST00000002911 ENSMUSP00000002911 TRANSLATION protein_coding - - 1 667.0 0.0 4.85 0.3 150.2 0.0 -4,-5 0.7702 12 8.0 PRINCIPAL:4 ENSMUSG00000002833 Hdgfl2 ENSMUST00000225731 - NO_TRANSLATION retained_intron ENSMUSG00000002833 Hdgfl2 ENSMUST00000225843 ENSMUSP00000153249 TRANSLATION protein_coding - - - 678.0 0.0 4.85 0.0 150.2 0.0 -4,-5 0.1931 12 8.0 ALTERNATIVE:2 ENSMUSG00000002833 Hdgfl2 ENSMUST00000224101 - NO_TRANSLATION retained_intron ENSMUSG00000002833 Hdgfl2 ENSMUST00000224078 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002833 Hdgfl2 ENSMUST00000224172 - NO_TRANSLATION retained_intron ENSMUSG00000002833 Hdgfl2 ENSMUST00000224655 - NO_TRANSLATION retained_intron ENSMUSG00000058704 Memo1 ENSMUST00000233422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058704 Memo1 ENSMUST00000233495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058704 Memo1 ENSMUST00000232987 ENSMUSP00000156956 TRANSLATION nonsense_mediated_decay - - - 206.0 0.0 5.33 1.0 192.3 0.0 -4,-7 0.0008 4 -2.0 MINOR ENSMUSG00000058704 Memo1 ENSMUST00000232861 - NO_TRANSLATION TEC ENSMUSG00000058704 Memo1 ENSMUST00000233144 ENSMUSP00000156440 TRANSLATION protein_coding stop - - 107.0 0.0 3.25 0.0 98.8 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000058704 Memo1 ENSMUST00000232989 ENSMUSP00000156437 TRANSLATION protein_coding - - - 222.0 0.0 6.25 0.1 185.0 0.0 -4,-7 0.0007 9 2.664 MINOR ENSMUSG00000058704 Memo1 ENSMUST00000233176 ENSMUSP00000156929 TRANSLATION nonsense_mediated_decay - - - 81.0 0.0 2.25 0.0 55.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000058704 Memo1 ENSMUST00000233514 ENSMUSP00000156607 TRANSLATION protein_coding - CCDS28969.1 - 297.0 0.0 8.33 29.4 271.3 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000058704 Memo1 ENSMUST00000233214 - NO_TRANSLATION retained_intron ENSMUSG00000058704 Memo1 ENSMUST00000078459 ENSMUSP00000077553 TRANSLATION protein_coding - - 1 289.0 0.0 7.33 0.0 249.4 0.0 -4,-7 0.0178 8 8.688 MINOR ENSMUSG00000096717 Vmn2r98 ENSMUST00000170424 ENSMUSP00000131261 TRANSLATION protein_coding - CCDS49976.1 5 857.0 4.0 2.36 0.1 377.4 0.0 -2,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000035678 Tnfsf9 ENSMUST00000039490 ENSMUSP00000040412 TRANSLATION protein_coding - CCDS28926.1 1 309.0 0.0 1.5 0.1 85.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091614 Gm17657 ENSMUST00000234305 ENSMUSP00000157004 TRANSLATION protein_coding - - - 184.0 0.0 0.0 5.3 219.7 4.0 -3,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000091614 Gm17657 ENSMUST00000168877 ENSMUSP00000129330 TRANSLATION protein_coding stop - - 170.0 0.0 0.0 0.0 219.7 4.0 -3,-5 0.102 - -2.0 MINOR ENSMUSG00000024406 Pou5f1 ENSMUST00000174782 ENSMUSP00000134493 TRANSLATION protein_coding stop - 1 157.0 0.0 3.0 0.0 161.6 0.0 -3,-6 0.0018 - -2.0 MINOR ENSMUSG00000024406 Pou5f1 ENSMUST00000173256 ENSMUSP00000134060 TRANSLATION protein_coding stop - 1 132.0 0.0 3.0 0.0 161.6 0.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000024406 Pou5f1 ENSMUST00000173805 ENSMUSP00000133633 TRANSLATION protein_coding stop - 1 132.0 0.0 3.0 0.0 161.6 0.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000024406 Pou5f1 ENSMUST00000173934 ENSMUSP00000134729 TRANSLATION protein_coding stop - 1 132.0 0.0 3.0 0.0 161.6 0.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000024406 Pou5f1 ENSMUST00000172651 ENSMUSP00000134654 TRANSLATION protein_coding stop - 1 132.0 0.0 3.0 0.0 161.6 0.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000024406 Pou5f1 ENSMUST00000025271 ENSMUSP00000025271 TRANSLATION protein_coding - CCDS37600.1 1 352.0 0.0 3.2 8.0 195.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071275 Fpr-rs6 ENSMUST00000095636 ENSMUSP00000093296 TRANSLATION protein_coding - CCDS28423.1 - 339.0 0.0 1.0 0.0 126.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033450 Tagap ENSMUST00000036370 ENSMUSP00000047431 TRANSLATION protein_coding - CCDS28379.1 1 714.0 0.0 4.8 1.1 118.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000033450 Tagap ENSMUST00000226153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015599 Ttbk1 ENSMUST00000225808 ENSMUSP00000153386 TRANSLATION protein_coding - - - 765.0 0.0 8.25 0.0 112.7 0.0 -4,-5 0.789 7 6.0 ALTERNATIVE:2 ENSMUSG00000015599 Ttbk1 ENSMUST00000223818 ENSMUSP00000153583 TRANSLATION nonsense_mediated_decay start - - 71.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000015599 Ttbk1 ENSMUST00000047034 ENSMUSP00000044580 TRANSLATION protein_coding - CCDS50125.1 5 1308.0 0.0 8.25 0.1 112.7 0.0 -4,-5 0.7784 16 6.0 PRINCIPAL:3 ENSMUSG00000052469 Tcp10c ENSMUST00000097403 ENSMUSP00000095015 TRANSLATION protein_coding - CCDS49953.1 1 482.0 0.0 4.55 0.0 263.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000052469 Tcp10c ENSMUST00000233884 ENSMUSP00000156583 TRANSLATION nonsense_mediated_decay - - - 363.0 0.0 1.8 0.0 42.2 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000052469 Tcp10c ENSMUST00000233944 ENSMUSP00000156427 TRANSLATION protein_coding stop - - 143.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000109376 Or14j8 ENSMUST00000049620 ENSMUSP00000092917 TRANSLATION protein_coding - CCDS28771.1 - 323.0 0.0 1.0 0.1 152.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000023873 1700010I14Rik ENSMUST00000136954 ENSMUSP00000156639 TRANSLATION protein_coding stop - 2 355.0 0.0 0.0 0.0 113.9 0.0 -4,-5 0.0671 - -2.0 MINOR ENSMUSG00000023873 1700010I14Rik ENSMUST00000233654 ENSMUSP00000156914 TRANSLATION nonsense_mediated_decay start - - 512.0 0.0 0.0 0.0 113.9 0.0 -4,-5 0.1244 - -2.0 MINOR ENSMUSG00000023873 1700010I14Rik ENSMUST00000151609 ENSMUSP00000118841 TRANSLATION protein_coding - CCDS28385.2 1 493.0 0.0 0.0 0.1 113.9 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000023873 1700010I14Rik ENSMUST00000024650 ENSMUSP00000024650 TRANSLATION protein_coding - CCDS84275.1 1 532.0 0.0 0.0 0.0 113.9 0.0 -4,-5 0.2399 - 2.0 ALTERNATIVE:2 ENSMUSG00000023873 1700010I14Rik ENSMUST00000232775 ENSMUSP00000156573 TRANSLATION protein_coding - - - 399.0 0.0 0.0 0.0 113.9 0.0 -4,-5 0.0688 - 2.0 ALTERNATIVE:2 ENSMUSG00000034509 Mad2l1bp ENSMUST00000171172 ENSMUSP00000125915 TRANSLATION protein_coding - CCDS28821.1 1 276.0 0.0 0.97 1.5 537.6 0.0 -4,-5 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000038677 Scube3 ENSMUST00000043503 ENSMUSP00000038366 TRANSLATION protein_coding - CCDS37527.1 1 993.0 42.0 10.545 6.4 425.1 0.0 3,-2 1.0 - 15.502 PRINCIPAL:4 ENSMUSG00000038677 Scube3 ENSMUST00000148342 - NO_TRANSLATION retained_intron ENSMUSG00000038677 Scube3 ENSMUST00000137147 ENSMUSP00000156515 TRANSLATION protein_coding - - 5 1009.0 42.0 10.795 6.4 425.1 0.0 3,-2 0.9496 - 16.0 ALTERNATIVE:1 ENSMUSG00000038677 Scube3 ENSMUST00000233905 ENSMUSP00000156885 TRANSLATION protein_coding - - - 992.0 42.0 10.625 6.4 425.1 0.0 3,-2 0.8449 - 15.658 ALTERNATIVE:1 ENSMUSG00000038677 Scube3 ENSMUST00000132670 ENSMUSP00000117490 TRANSLATION protein_coding - - 1 911.0 42.0 9.905 0.0 380.1 0.0 3,-2 0.0731 - 11.618 MINOR ENSMUSG00000038677 Scube3 ENSMUST00000142170 - NO_TRANSLATION retained_intron ENSMUSG00000038677 Scube3 ENSMUST00000232984 - NO_TRANSLATION retained_intron ENSMUSG00000040899 Ccr6 ENSMUST00000097418 ENSMUSP00000095029 TRANSLATION protein_coding - CCDS28381.1 1 367.0 0.0 1.6 1.5 164.3 7.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000040899 Ccr6 ENSMUST00000166348 ENSMUSP00000128559 TRANSLATION protein_coding - CCDS28381.1 1 367.0 0.0 1.6 1.5 164.3 7.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000040899 Ccr6 ENSMUST00000167956 ENSMUSP00000128529 TRANSLATION protein_coding - CCDS28381.1 1 367.0 0.0 1.6 1.5 164.3 7.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000040899 Ccr6 ENSMUST00000177568 ENSMUSP00000137249 TRANSLATION protein_coding - CCDS28381.1 1 367.0 0.0 1.6 1.5 164.3 7.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000040899 Ccr6 ENSMUST00000164411 ENSMUSP00000131153 TRANSLATION protein_coding - CCDS28381.1 1 367.0 0.0 1.6 1.5 164.3 7.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000040899 Ccr6 ENSMUST00000232412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040899 Ccr6 ENSMUST00000231340 ENSMUSP00000156247 TRANSLATION protein_coding stop - - 48.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040899 Ccr6 ENSMUST00000180103 ENSMUSP00000135945 TRANSLATION protein_coding - CCDS28381.1 1 367.0 0.0 1.6 1.5 164.3 7.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000040899 Ccr6 ENSMUST00000231545 ENSMUSP00000156324 TRANSLATION protein_coding - CCDS28381.1 - 367.0 0.0 1.6 1.5 164.3 7.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000066720 Cldn9 ENSMUST00000085989 ENSMUSP00000093236 TRANSLATION protein_coding - CCDS28458.1 - 217.0 0.0 1.0 36.9 112.7 0.0 1,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000090304 Vmn2r99 ENSMUST00000231989 ENSMUSP00000156067 TRANSLATION protein_coding - - - 620.0 2.0 1.8 0.0 169.0 0.0 2,-3 0.0017 - 6.074 MINOR ENSMUSG00000090304 Vmn2r99 ENSMUST00000176107 ENSMUSP00000135236 TRANSLATION protein_coding - CCDS57046.1 5 856.0 4.0 2.65 0.0 373.1 0.0 2,-3 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024340 Btnl2 ENSMUST00000025198 ENSMUSP00000025198 TRANSLATION protein_coding - CCDS37585.1 1 514.0 0.0 4.33 0.1 127.5 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000024325 Ring1 ENSMUST00000025183 ENSMUSP00000025183 TRANSLATION protein_coding - CCDS50070.1 1 406.0 8.0 3.05 8.7 156.4 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000024325 Ring1 ENSMUST00000172739 - NO_TRANSLATION retained_intron ENSMUSG00000024325 Ring1 ENSMUST00000174054 - NO_TRANSLATION retained_intron ENSMUSG00000024180 Pgap6 ENSMUST00000128597 ENSMUSP00000121651 TRANSLATION protein_coding - - 5 747.0 0.0 6.29 0.0 163.3 9.0 -4,-6 0.1172 2 8.0 ALTERNATIVE:2 ENSMUSG00000024180 Pgap6 ENSMUST00000235821 ENSMUSP00000157497 TRANSLATION protein_coding - - - 720.0 0.0 5.29 0.0 70.0 11.0 3,-1 0.0128 2 4.002 MINOR ENSMUSG00000024180 Pgap6 ENSMUST00000237058 ENSMUSP00000157750 TRANSLATION protein_coding - - - 630.0 0.0 3.76 0.0 0.0 5.0 3,-1 0.0065 2 0.942 MINOR ENSMUSG00000024180 Pgap6 ENSMUST00000236047 - NO_TRANSLATION retained_intron ENSMUSG00000024180 Pgap6 ENSMUST00000236993 - NO_TRANSLATION retained_intron ENSMUSG00000024180 Pgap6 ENSMUST00000025010 ENSMUSP00000025010 TRANSLATION protein_coding - CCDS28546.1 1 769.0 0.0 6.29 2.1 163.3 9.0 3,-1 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000071267 Zfp942 ENSMUST00000091879 ENSMUSP00000089494 TRANSLATION protein_coding - CCDS57052.1 1 486.0 44.0 1.0 0.0 280.6 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000071267 Zfp942 ENSMUST00000074295 ENSMUSP00000073907 TRANSLATION protein_coding - CCDS57052.1 5 486.0 44.0 1.0 0.0 280.6 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000071267 Zfp942 ENSMUST00000126485 - NO_TRANSLATION retained_intron ENSMUSG00000092342 Esp31 ENSMUST00000174742 ENSMUSP00000133965 TRANSLATION protein_coding - CCDS57085.1 1 114.0 0.0 0.0 0.0 34.9 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045409 Trim39 ENSMUST00000042717 ENSMUSP00000039790 TRANSLATION protein_coding - CCDS37611.1 1 488.0 17.0 4.73 9.2 239.1 0.0 -4,-5 1.0 - 16.604 PRINCIPAL:4 ENSMUSG00000045409 Trim39 ENSMUST00000173369 ENSMUSP00000133298 TRANSLATION protein_coding - - 1 496.0 17.0 4.928 9.2 239.1 0.0 -4,-5 0.8707 - 17.0 ALTERNATIVE:1 ENSMUSG00000045409 Trim39 ENSMUST00000113706 ENSMUSP00000109336 TRANSLATION protein_coding - CCDS37611.1 1 488.0 17.0 4.73 9.2 239.1 0.0 -4,-5 1.0 - 16.604 PRINCIPAL:4 ENSMUSG00000045409 Trim39 ENSMUST00000174197 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045409 Trim39 ENSMUST00000113704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045409 Trim39 ENSMUST00000173665 ENSMUSP00000133529 TRANSLATION nonsense_mediated_decay start - 1 60.0 9.0 1.0 0.0 36.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045409 Trim39 ENSMUST00000172832 - NO_TRANSLATION retained_intron ENSMUSG00000036398 Ppp1r11 ENSMUST00000174711 ENSMUSP00000134685 TRANSLATION protein_coding - CCDS28729.1 3 131.0 0.0 1.2 6.3 75.0 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000036398 Ppp1r11 ENSMUST00000173540 ENSMUSP00000134322 TRANSLATION protein_coding stop - 2 120.0 0.0 1.2 0.0 75.0 0.0 -4,-5 0.0305 4 -2.0 MINOR ENSMUSG00000036398 Ppp1r11 ENSMUST00000040402 ENSMUSP00000047202 TRANSLATION protein_coding - CCDS28729.1 1 131.0 0.0 1.2 6.3 75.0 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000024248 Cox7a2l ENSMUST00000167741 ENSMUSP00000131584 TRANSLATION protein_coding - CCDS50194.1 1 134.0 0.0 0.65 0.0 0.0 0.0 -4,-6 0.0329 3 2.784 MINOR ENSMUSG00000024248 Cox7a2l ENSMUST00000234258 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024248 Cox7a2l ENSMUST00000025095 ENSMUSP00000025095 TRANSLATION protein_coding - CCDS28995.1 1 111.0 0.0 1.4 34.9 28.9 0.0 -4,-7 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000024248 Cox7a2l ENSMUST00000235085 - NO_TRANSLATION retained_intron ENSMUSG00000034377 Tulp4 ENSMUST00000142030 ENSMUSP00000120358 TRANSLATION protein_coding stop - 5 101.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034377 Tulp4 ENSMUST00000152672 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034377 Tulp4 ENSMUST00000149756 ENSMUSP00000123218 TRANSLATION protein_coding - CCDS49934.1 1 1354.0 4.0 1.2 1.1 86.2 0.0 -4,-6 0.3267 12 13.084 MINOR ENSMUSG00000034377 Tulp4 ENSMUST00000149838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034377 Tulp4 ENSMUST00000137063 ENSMUSP00000123119 TRANSLATION protein_coding start/stop - 1 673.0 3.0 0.0 0.0 42.4 0.0 -4,-1 0.005 3 -2.0 MINOR ENSMUSG00000034377 Tulp4 ENSMUST00000151732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034377 Tulp4 ENSMUST00000145340 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034377 Tulp4 ENSMUST00000144124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034377 Tulp4 ENSMUST00000146758 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034377 Tulp4 ENSMUST00000039655 ENSMUSP00000049248 TRANSLATION protein_coding - CCDS28370.1 1 1547.0 4.0 2.386 4.0 86.2 0.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000034377 Tulp4 ENSMUST00000141059 - NO_TRANSLATION retained_intron ENSMUSG00000034377 Tulp4 ENSMUST00000126982 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095407 Tmem200c ENSMUST00000178545 ENSMUSP00000137246 TRANSLATION protein_coding - CCDS57107.1 2 637.0 0.0 0.0 0.4 207.2 0.0 -4,-7 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000095407 Tmem200c ENSMUST00000233019 ENSMUSP00000156683 TRANSLATION protein_coding stop - - 52.0 0.0 0.0 0.0 45.3 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000005370 Msh6 ENSMUST00000234756 ENSMUSP00000157173 TRANSLATION protein_coding stop - - 167.0 0.0 2.0 0.0 84.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005370 Msh6 ENSMUST00000234936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005370 Msh6 ENSMUST00000005503 ENSMUSP00000005503 TRANSLATION protein_coding - CCDS29021.1 1 1358.0 11.0 7.2 3.5 671.1 0.0 -4,-7 1.0 28 19.0 PRINCIPAL:1 ENSMUSG00000073421 H2-Ab1 ENSMUST00000235980 - NO_TRANSLATION retained_intron ENSMUSG00000073421 H2-Ab1 ENSMUST00000040828 ENSMUSP00000041008 TRANSLATION protein_coding - CCDS37583.1 1 265.0 0.0 4.15 2.4 226.7 1.0 3,-2 1.0 15 13.0 PRINCIPAL:1 ENSMUSG00000073421 H2-Ab1 ENSMUST00000237342 ENSMUSP00000157600 TRANSLATION protein_coding stop - - 192.0 0.0 2.4 0.0 208.7 0.0 3,-2 0.0015 9 -2.0 MINOR ENSMUSG00000073421 H2-Ab1 ENSMUST00000174875 - NO_TRANSLATION retained_intron ENSMUSG00000073421 H2-Ab1 ENSMUST00000237866 ENSMUSP00000157806 TRANSLATION protein_coding - - - 174.0 0.0 3.15 0.0 96.6 1.0 2,-2 0.0042 7 4.002 MINOR ENSMUSG00000073421 H2-Ab1 ENSMUST00000236643 - NO_TRANSLATION retained_intron ENSMUSG00000073421 H2-Ab1 ENSMUST00000173103 - NO_TRANSLATION retained_intron ENSMUSG00000073421 H2-Ab1 ENSMUST00000237429 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004730 Adgre1 ENSMUST00000233840 ENSMUSP00000156743 TRANSLATION protein_coding stop - - 296.0 30.0 3.936 0.0 132.1 0.0 1,-3 0.0009 1 -2.0 MINOR ENSMUSG00000004730 Adgre1 ENSMUST00000233376 ENSMUSP00000156948 TRANSLATION protein_coding stop - - 104.0 13.0 1.296 0.0 56.8 0.0 1,-3 0.0 - -2.0 MINOR ENSMUSG00000004730 Adgre1 ENSMUST00000004850 ENSMUSP00000004850 TRANSLATION protein_coding - CCDS50160.1 1 931.0 45.0 8.576 0.1 455.6 7.0 1,-3 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000004730 Adgre1 ENSMUST00000232808 ENSMUSP00000156744 TRANSLATION protein_coding stop - - 125.0 14.0 1.446 0.0 57.5 0.0 4,-2 0.0 - -2.0 MINOR ENSMUSG00000004730 Adgre1 ENSMUST00000086763 ENSMUSP00000083971 TRANSLATION protein_coding - CCDS50160.1 1 931.0 45.0 8.576 0.1 455.6 7.0 1,-3 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000003534 Ddr1 ENSMUST00000097333 ENSMUSP00000094945 TRANSLATION protein_coding - CCDS37603.1 1 874.0 24.0 13.69 0.8 358.6 1.0 4,-1 0.4837 4 14.0 ALTERNATIVE:2 ENSMUSG00000003534 Ddr1 ENSMUST00000117301 ENSMUSP00000112570 TRANSLATION protein_coding - CCDS28703.1 1 911.0 24.0 13.69 2.6 358.6 1.0 4,-1 1.0 5 15.0 PRINCIPAL:2 ENSMUSG00000003534 Ddr1 ENSMUST00000166980 ENSMUSP00000133047 TRANSLATION protein_coding - CCDS28703.1 1 911.0 24.0 13.69 2.6 358.6 1.0 4,-1 1.0 5 15.0 PRINCIPAL:2 ENSMUSG00000003534 Ddr1 ENSMUST00000119825 ENSMUSP00000113062 TRANSLATION protein_coding - CCDS28703.1 1 911.0 24.0 13.69 2.6 358.6 1.0 4,-1 1.0 5 15.0 PRINCIPAL:2 ENSMUSG00000003534 Ddr1 ENSMUST00000148065 ENSMUSP00000120635 TRANSLATION protein_coding stop - 3 143.0 3.0 3.79 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003534 Ddr1 ENSMUST00000155957 ENSMUSP00000117427 TRANSLATION nonsense_mediated_decay - - 1 244.0 0.0 4.565 0.0 75.0 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000003534 Ddr1 ENSMUST00000146472 ENSMUSP00000119397 TRANSLATION protein_coding stop - 5 231.0 0.0 5.53 0.0 75.0 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000003534 Ddr1 ENSMUST00000003628 ENSMUSP00000003628 TRANSLATION protein_coding - CCDS28703.1 1 911.0 24.0 13.69 2.6 358.6 1.0 4,-1 1.0 5 15.0 PRINCIPAL:2 ENSMUSG00000003534 Ddr1 ENSMUST00000145900 ENSMUSP00000122361 TRANSLATION protein_coding stop - 2 221.0 0.0 5.2 0.0 75.0 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000003534 Ddr1 ENSMUST00000135078 ENSMUSP00000122191 TRANSLATION protein_coding stop - 2 89.0 0.0 2.07 0.0 0.0 0.0 4,-1 0.0008 - -2.0 MINOR ENSMUSG00000003534 Ddr1 ENSMUST00000155628 ENSMUSP00000133659 TRANSLATION protein_coding stop - 5 584.0 10.0 9.19 0.0 75.0 1.0 4,-1 0.0043 3 -2.0 MINOR ENSMUSG00000003534 Ddr1 ENSMUST00000134995 ENSMUSP00000117301 TRANSLATION protein_coding stop - 3 264.0 3.0 6.53 0.0 75.0 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000094396 Vmn2r124 ENSMUST00000233320 ENSMUSP00000156537 TRANSLATION nonsense_mediated_decay - - - 180.0 0.0 0.7 0.0 0.0 0.0 4,-1 0.0025 - -2.0 MINOR ENSMUSG00000094396 Vmn2r124 ENSMUST00000233096 - NO_TRANSLATION retained_intron ENSMUSG00000094396 Vmn2r124 ENSMUST00000231546 ENSMUSP00000155888 TRANSLATION nonsense_mediated_decay - - - 183.0 0.0 0.2 0.0 0.0 0.0 4,-1 0.0011 - -2.0 MINOR ENSMUSG00000094396 Vmn2r124 ENSMUST00000176802 ENSMUSP00000135613 TRANSLATION protein_coding - CCDS70763.1 5 855.0 4.0 3.233 0.0 395.2 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000101361 Gm7358 ENSMUST00000186636 ENSMUSP00000140965 TRANSLATION protein_coding - - - 508.0 18.0 0.5 0.1 231.8 0.0 -4,-5 0.8188 - 18.0 PRINCIPAL:1 ENSMUSG00000024078 Ttc27 ENSMUST00000234264 - NO_TRANSLATION retained_intron ENSMUSG00000024078 Ttc27 ENSMUST00000234628 ENSMUSP00000157215 TRANSLATION protein_coding start - - 274.0 0.0 4.248 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024078 Ttc27 ENSMUST00000234558 ENSMUSP00000157317 TRANSLATION protein_coding start/stop - - 195.0 0.0 2.246 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024078 Ttc27 ENSMUST00000024882 ENSMUSP00000024882 TRANSLATION protein_coding - CCDS28972.1 1 847.0 0.0 9.778 6.9 21.5 0.0 -4,-7 1.0 11 9.334 PRINCIPAL:4 ENSMUSG00000024078 Ttc27 ENSMUST00000234568 ENSMUSP00000157097 TRANSLATION protein_coding - - - 846.0 0.0 9.778 6.9 21.5 0.0 -4,-7 0.8373 11 9.334 ALTERNATIVE:1 ENSMUSG00000024078 Ttc27 ENSMUST00000235123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024078 Ttc27 ENSMUST00000234705 ENSMUSP00000157026 TRANSLATION nonsense_mediated_decay start - - 299.0 0.0 5.748 0.0 23.5 0.0 -4,-5 0.0093 - -2.0 MINOR ENSMUSG00000024078 Ttc27 ENSMUST00000234751 ENSMUSP00000157138 TRANSLATION protein_coding stop - - 164.0 0.0 0.132 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000003929 Zfp81 ENSMUST00000235063 ENSMUSP00000157178 TRANSLATION nonsense_mediated_decay - - - 56.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000003929 Zfp81 ENSMUST00000054072 ENSMUSP00000050728 TRANSLATION protein_coding - CCDS37564.1 1 531.0 44.0 2.0 0.1 197.4 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000003929 Zfp81 ENSMUST00000234016 ENSMUSP00000157222 TRANSLATION protein_coding stop - - 424.0 38.0 1.0 0.0 105.9 0.0 -4,-5 0.0017 1 -2.0 MINOR ENSMUSG00000090273 Prr22 ENSMUST00000168666 ENSMUSP00000127457 TRANSLATION protein_coding - CCDS57104.1 3 422.0 0.0 0.0 0.1 479.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000090273 Prr22 ENSMUST00000187612 - NO_TRANSLATION retained_intron ENSMUSG00000061207 Stk19 ENSMUST00000159333 ENSMUSP00000125311 TRANSLATION protein_coding start - 5 179.0 0.0 3.5 0.0 54.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000061207 Stk19 ENSMUST00000161238 - NO_TRANSLATION retained_intron ENSMUSG00000061207 Stk19 ENSMUST00000160193 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061207 Stk19 ENSMUST00000161885 ENSMUSP00000124667 TRANSLATION nonsense_mediated_decay start - 3 107.0 0.0 1.5 0.0 0.0 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000061207 Stk19 ENSMUST00000077477 ENSMUSP00000076686 TRANSLATION protein_coding - CCDS28659.1 1 254.0 0.0 6.0 16.3 118.6 0.0 -4,0 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000061207 Stk19 ENSMUST00000162055 ENSMUSP00000123988 TRANSLATION nonsense_mediated_decay start - 5 64.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061207 Stk19 ENSMUST00000162954 - NO_TRANSLATION retained_intron ENSMUSG00000061207 Stk19 ENSMUST00000160993 - NO_TRANSLATION retained_intron ENSMUSG00000015468 Notch4 ENSMUST00000156724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015468 Notch4 ENSMUST00000152714 - NO_TRANSLATION retained_intron ENSMUSG00000015468 Notch4 ENSMUST00000150441 - NO_TRANSLATION retained_intron ENSMUSG00000015468 Notch4 ENSMUST00000151867 ENSMUSP00000134497 TRANSLATION nonsense_mediated_decay start - 5 43.0 0.0 0.32 0.0 28.1 0.0 1,-2 0.0 - -2.0 MINOR ENSMUSG00000015468 Notch4 ENSMUST00000151654 ENSMUSP00000133646 TRANSLATION nonsense_mediated_decay start - 5 43.0 0.0 0.32 0.0 28.1 0.0 1,-2 0.0 - -2.0 MINOR ENSMUSG00000015468 Notch4 ENSMUST00000141768 - NO_TRANSLATION retained_intron ENSMUSG00000015468 Notch4 ENSMUST00000126702 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015468 Notch4 ENSMUST00000126950 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015468 Notch4 ENSMUST00000173389 ENSMUSP00000133574 TRANSLATION nonsense_mediated_decay - - 1 978.0 63.0 10.425 0.0 536.2 0.0 4,-1 0.0146 - -2.0 MINOR ENSMUSG00000015468 Notch4 ENSMUST00000128314 - NO_TRANSLATION retained_intron ENSMUSG00000015468 Notch4 ENSMUST00000015612 ENSMUSP00000015612 TRANSLATION protein_coding - CCDS28647.1 1 1964.0 75.0 14.245 0.1 836.7 0.0 4,-1 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000015468 Notch4 ENSMUST00000174707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050613 Or14j1 ENSMUST00000213857 ENSMUSP00000149602 TRANSLATION protein_coding - CCDS28767.1 5 320.0 0.0 1.0 7.0 160.6 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050613 Or14j1 ENSMUST00000050255 ENSMUSP00000055221 TRANSLATION protein_coding - CCDS28767.1 - 320.0 0.0 1.0 7.0 160.6 6.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000005936 Kctd20 ENSMUST00000232772 ENSMUSP00000156907 TRANSLATION protein_coding - - - 253.0 0.0 4.0 1.0 0.0 0.0 -4,-5 0.0128 2 0.0 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000232980 - NO_TRANSLATION retained_intron ENSMUSG00000005936 Kctd20 ENSMUST00000122163 ENSMUSP00000112957 TRANSLATION nonsense_mediated_decay - - 5 170.0 0.0 1.0 0.0 36.9 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000168507 ENSMUSP00000131435 TRANSLATION protein_coding - CCDS28588.1 1 419.0 0.0 7.33 13.5 166.6 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000005936 Kctd20 ENSMUST00000233197 ENSMUSP00000156936 TRANSLATION protein_coding - CCDS28588.1 - 419.0 0.0 7.33 13.5 166.6 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000005936 Kctd20 ENSMUST00000233847 ENSMUSP00000156448 TRANSLATION nonsense_mediated_decay - - - 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000233145 ENSMUSP00000156877 TRANSLATION nonsense_mediated_decay - - - 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000118762 ENSMUSP00000112890 TRANSLATION protein_coding - - 1 348.0 0.0 7.33 2.0 166.6 0.0 -4,-5 0.2337 3 12.32 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000232874 ENSMUSP00000156575 TRANSLATION protein_coding - - - 274.0 0.0 6.33 6.6 112.6 0.0 -4,-5 0.2671 2 8.554 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000117672 ENSMUSP00000113740 TRANSLATION protein_coding - - 5 348.0 0.0 7.33 2.0 166.6 0.0 -4,-5 0.2337 3 12.32 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000233064 ENSMUSP00000156849 TRANSLATION protein_coding stop - - 94.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000232729 ENSMUSP00000156465 TRANSLATION nonsense_mediated_decay - - - 72.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000150858 ENSMUSP00000156477 TRANSLATION protein_coding - - 3 173.0 0.0 3.25 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000153831 ENSMUSP00000122690 TRANSLATION protein_coding stop - 5 286.0 0.0 7.33 0.0 166.6 0.0 -4,-5 0.0242 3 -2.0 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000057174 ENSMUSP00000062282 TRANSLATION protein_coding - - 1 353.0 0.0 5.33 2.2 161.3 0.0 -4,-5 0.0931 4 8.064 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000153462 ENSMUSP00000120301 TRANSLATION protein_coding stop - 2 202.0 0.0 4.83 0.0 166.6 0.0 -4,-5 0.0021 2 -2.0 MINOR ENSMUSG00000005936 Kctd20 ENSMUST00000233334 ENSMUSP00000156738 TRANSLATION protein_coding - - - 173.0 0.0 3.25 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000036501 Fam13b ENSMUST00000237576 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036501 Fam13b ENSMUST00000238047 ENSMUSP00000157749 TRANSLATION protein_coding start/stop - - 306.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 1 -2.0 MINOR ENSMUSG00000036501 Fam13b ENSMUST00000238059 ENSMUSP00000158573 TRANSLATION nonsense_mediated_decay start - - 137.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036501 Fam13b ENSMUST00000040506 ENSMUSP00000038199 TRANSLATION protein_coding - CCDS29128.1 1 851.0 0.0 2.44 6.1 125.7 0.0 -4,-6 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000036501 Fam13b ENSMUST00000238068 - NO_TRANSLATION retained_intron ENSMUSG00000036501 Fam13b ENSMUST00000237676 - NO_TRANSLATION retained_intron ENSMUSG00000036501 Fam13b ENSMUST00000236786 ENSMUSP00000157483 TRANSLATION nonsense_mediated_decay - - - 289.0 0.0 2.44 0.0 125.7 0.0 -4,-6 0.0229 2 -2.0 MINOR ENSMUSG00000036501 Fam13b ENSMUST00000236598 - NO_TRANSLATION retained_intron ENSMUSG00000036501 Fam13b ENSMUST00000237302 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036501 Fam13b ENSMUST00000235529 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036501 Fam13b ENSMUST00000235499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036501 Fam13b ENSMUST00000237051 - NO_TRANSLATION retained_intron ENSMUSG00000036501 Fam13b ENSMUST00000235364 ENSMUSP00000158564 TRANSLATION nonsense_mediated_decay start - - 134.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024483 Ankhd1 ENSMUST00000136030 ENSMUSP00000115837 TRANSLATION protein_coding start/stop - 3 219.0 0.0 3.07 0.0 86.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024483 Ankhd1 ENSMUST00000156424 - NO_TRANSLATION retained_intron ENSMUSG00000024483 Ankhd1 ENSMUST00000116653 ENSMUSP00000112352 TRANSLATION protein_coding start - 3 169.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000024483 Ankhd1 ENSMUST00000037072 ENSMUSP00000040300 TRANSLATION protein_coding start - 5 1021.0 0.0 0.48 0.0 54.1 0.0 -4,-6 0.0097 11 -2.0 MINOR ENSMUSG00000024483 Ankhd1 ENSMUST00000153612 ENSMUSP00000116462 TRANSLATION nonsense_mediated_decay start - 3 91.0 0.0 1.3 0.0 45.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024483 Ankhd1 ENSMUST00000134146 ENSMUSP00000122136 TRANSLATION protein_coding start/stop - 3 214.0 0.0 1.22 0.0 29.0 0.0 -3,-6 0.0 3 -2.0 MINOR ENSMUSG00000024483 Ankhd1 ENSMUST00000155329 ENSMUSP00000123270 TRANSLATION protein_coding - CCDS50256.1 5 2548.0 0.0 15.48 0.0 540.1 0.0 -4,-5 1.0 27 12.0 PRINCIPAL:1 ENSMUSG00000024483 Ankhd1 ENSMUST00000142780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024483 Ankhd1 ENSMUST00000143966 - NO_TRANSLATION retained_intron ENSMUSG00000024483 Ankhd1 ENSMUST00000006205 ENSMUSP00000006205 TRANSLATION nonsense_mediated_decay - - 5 2485.0 0.0 15.48 0.0 540.1 0.0 -4,-5 0.3753 27 -2.0 MINOR ENSMUSG00000024483 Ankhd1 ENSMUST00000152060 ENSMUSP00000116047 TRANSLATION protein_coding start/stop - 3 335.0 0.0 3.62 0.0 86.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024483 Ankhd1 ENSMUST00000152940 - NO_TRANSLATION retained_intron ENSMUSG00000024483 Ankhd1 ENSMUST00000130035 ENSMUSP00000117110 TRANSLATION nonsense_mediated_decay start - 5 111.0 0.0 2.1 0.0 58.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000002477 Snrpd1 ENSMUST00000002551 ENSMUSP00000002551 TRANSLATION protein_coding - CCDS29056.1 1 119.0 0.0 2.65 25.9 67.5 0.0 -4,-6 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000002477 Snrpd1 ENSMUST00000234077 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002477 Snrpd1 ENSMUST00000234728 - NO_TRANSLATION retained_intron ENSMUSG00000002477 Snrpd1 ENSMUST00000234207 ENSMUSP00000157360 TRANSLATION protein_coding - - - 78.0 0.0 1.65 3.3 0.0 0.0 -4,-6 0.0328 1 4.106 MINOR ENSMUSG00000002477 Snrpd1 ENSMUST00000235020 ENSMUSP00000157119 TRANSLATION protein_coding - - - 98.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 1 1.698 MINOR ENSMUSG00000056214 Pard6g ENSMUST00000070219 ENSMUSP00000069182 TRANSLATION protein_coding - CCDS29363.1 1 382.0 0.0 1.775 9.7 95.6 0.0 -4,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024413 Npc1 ENSMUST00000234044 - NO_TRANSLATION retained_intron ENSMUSG00000024413 Npc1 ENSMUST00000133112 - NO_TRANSLATION retained_intron ENSMUSG00000024413 Npc1 ENSMUST00000144435 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024413 Npc1 ENSMUST00000025279 ENSMUSP00000025279 TRANSLATION protein_coding - CCDS29064.1 1 1277.0 20.0 20.6 6.3 566.2 0.0 4,-1 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000024413 Npc1 ENSMUST00000235105 - NO_TRANSLATION retained_intron ENSMUSG00000024413 Npc1 ENSMUST00000145771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024413 Npc1 ENSMUST00000149211 - NO_TRANSLATION retained_intron ENSMUSG00000000420 Galnt1 ENSMUST00000164998 ENSMUSP00000132411 TRANSLATION protein_coding stop - 5 142.0 2.0 2.65 0.0 0.0 3.0 -1,-5 0.0016 - -2.0 MINOR ENSMUSG00000000420 Galnt1 ENSMUST00000171583 ENSMUSP00000131755 TRANSLATION nonsense_mediated_decay - - 3 62.0 0.0 0.0 0.0 0.0 3.0 -1,-5 0.0023 - -2.0 MINOR ENSMUSG00000000420 Galnt1 ENSMUST00000164066 ENSMUSP00000130238 TRANSLATION nonsense_mediated_decay start - 3 78.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000000420 Galnt1 ENSMUST00000170243 ENSMUSP00000132142 TRANSLATION protein_coding - CCDS29100.1 1 559.0 21.0 12.15 30.9 234.0 3.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000000420 Galnt1 ENSMUST00000000430 ENSMUSP00000000430 TRANSLATION protein_coding - CCDS29100.1 1 559.0 21.0 12.15 30.9 234.0 3.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000000420 Galnt1 ENSMUST00000170191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000420 Galnt1 ENSMUST00000178605 ENSMUSP00000137427 TRANSLATION protein_coding - CCDS29100.1 1 559.0 21.0 12.15 30.9 234.0 3.0 -1,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000000420 Galnt1 ENSMUST00000169474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109238 Tex51 ENSMUST00000207671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109238 Tex51 ENSMUST00000207669 ENSMUSP00000146976 TRANSLATION protein_coding - - 5 231.0 0.0 1.55 0.0 0.0 0.0 4,-1 0.7518 - 6.0 PRINCIPAL:1 ENSMUSG00000103088 Pcdhgb6 ENSMUST00000003599 ENSMUSP00000003599 TRANSLATION protein_coding - CCDS50259.1 1 930.0 49.0 1.0 0.0 504.1 0.0 1,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000024539 Ptpn2 ENSMUST00000120934 ENSMUSP00000113182 TRANSLATION protein_coding - - 5 363.0 11.0 6.75 0.1 262.4 0.0 -4,-5 0.0536 8 12.998 MINOR ENSMUSG00000024539 Ptpn2 ENSMUST00000025420 ENSMUSP00000025420 TRANSLATION protein_coding - CCDS37851.1 1 382.0 11.0 7.25 8.5 262.4 0.0 -4,-5 1.0 10 17.0 ALTERNATIVE:1 ENSMUSG00000024539 Ptpn2 ENSMUST00000122412 ENSMUSP00000112675 TRANSLATION protein_coding - CCDS50311.1 1 406.0 11.0 7.25 7.8 262.4 0.0 -4,-5 0.8986 11 16.721 PRINCIPAL:3 ENSMUSG00000024539 Ptpn2 ENSMUST00000128169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014294 Ndufa2 ENSMUST00000014438 ENSMUSP00000014438 TRANSLATION protein_coding - CCDS29161.1 1 99.0 0.0 2.75 30.9 54.5 0.0 -4,0 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000024617 Camk2a ENSMUST00000115295 ENSMUSP00000110950 TRANSLATION protein_coding - CCDS29277.1 1 200.0 4.0 3.816 0.0 220.3 0.0 2,-3 0.0155 8 1.5 MINOR ENSMUSG00000024617 Camk2a ENSMUST00000134496 - NO_TRANSLATION retained_intron ENSMUSG00000024617 Camk2a ENSMUST00000039904 ENSMUSP00000048325 TRANSLATION protein_coding - CCDS70898.1 5 189.0 4.0 3.75 0.0 220.3 0.0 2,-3 0.0155 8 1.5 MINOR ENSMUSG00000024617 Camk2a ENSMUST00000025519 ENSMUSP00000025519 TRANSLATION protein_coding - - 5 489.0 22.0 13.316 29.7 472.5 1.0 -4,-5 0.8309 13 17.196 ALTERNATIVE:1 ENSMUSG00000024617 Camk2a ENSMUST00000137805 ENSMUSP00000123480 TRANSLATION protein_coding start/stop - 3 177.0 18.0 4.849 0.0 143.7 0.0 -4,-2 0.0004 1 -2.0 MINOR ENSMUSG00000024617 Camk2a ENSMUST00000102888 ENSMUSP00000099952 TRANSLATION protein_coding - CCDS29276.1 1 478.0 22.0 13.25 36.9 472.5 1.0 -4,-5 1.0 13 17.868 PRINCIPAL:4 ENSMUSG00000024617 Camk2a ENSMUST00000115297 ENSMUSP00000110952 TRANSLATION protein_coding - - 2 108.0 8.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000034653 Ythdc2 ENSMUST00000202176 - NO_TRANSLATION retained_intron ENSMUSG00000034653 Ythdc2 ENSMUST00000201099 - NO_TRANSLATION retained_intron ENSMUSG00000034653 Ythdc2 ENSMUST00000201507 ENSMUSP00000144479 TRANSLATION nonsense_mediated_decay start - 1 585.0 0.0 5.26 0.0 161.2 0.0 -4,-6 0.0 13 -2.0 MINOR ENSMUSG00000034653 Ythdc2 ENSMUST00000037763 ENSMUSP00000048340 TRANSLATION protein_coding - CCDS50278.1 1 1445.0 9.0 13.41 2.7 396.1 0.0 -4,-6 1.0 29 19.0 PRINCIPAL:1 ENSMUSG00000024507 Hsd17b4 ENSMUST00000127325 - NO_TRANSLATION retained_intron ENSMUSG00000024507 Hsd17b4 ENSMUST00000152388 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024507 Hsd17b4 ENSMUST00000139502 - NO_TRANSLATION retained_intron ENSMUSG00000024507 Hsd17b4 ENSMUST00000025385 ENSMUSP00000025385 TRANSLATION protein_coding - CCDS29242.1 1 735.0 34.0 18.16 18.7 345.5 0.0 -3,-1 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000037815 Ctnna1 ENSMUST00000042345 ENSMUSP00000049007 TRANSLATION protein_coding - CCDS29139.1 1 906.0 0.0 17.48 36.9 1046.3 0.0 -4,-6 1.0 32 16.0 PRINCIPAL:1 ENSMUSG00000037815 Ctnna1 ENSMUST00000236483 - NO_TRANSLATION retained_intron ENSMUSG00000037815 Ctnna1 ENSMUST00000236969 - NO_TRANSLATION retained_intron ENSMUSG00000037815 Ctnna1 ENSMUST00000238145 - NO_TRANSLATION retained_intron ENSMUSG00000037815 Ctnna1 ENSMUST00000237855 ENSMUSP00000157907 TRANSLATION nonsense_mediated_decay - - - 37.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037815 Ctnna1 ENSMUST00000237154 ENSMUSP00000158091 TRANSLATION protein_coding stop - - 156.0 0.0 2.8 0.0 163.3 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000037815 Ctnna1 ENSMUST00000236571 - NO_TRANSLATION retained_intron ENSMUSG00000037815 Ctnna1 ENSMUST00000237475 - NO_TRANSLATION retained_intron ENSMUSG00000037815 Ctnna1 ENSMUST00000235449 ENSMUSP00000158398 TRANSLATION protein_coding stop - - 122.0 0.0 3.58 0.0 172.9 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000037815 Ctnna1 ENSMUST00000236037 ENSMUSP00000157978 TRANSLATION protein_coding stop - - 415.0 0.0 7.63 0.0 391.7 0.0 -4,-6 0.0 16 -2.0 MINOR ENSMUSG00000037815 Ctnna1 ENSMUST00000235269 ENSMUSP00000158385 TRANSLATION protein_coding stop - - 62.0 0.0 1.83 0.0 77.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024538 Ppic ENSMUST00000025419 ENSMUSP00000025419 TRANSLATION protein_coding - CCDS29252.1 1 212.0 8.0 4.4 6.3 161.1 0.0 1,-3 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000024510 Ftmt ENSMUST00000025388 ENSMUSP00000025388 TRANSLATION protein_coding - CCDS29246.1 - 237.0 23.0 1.0 7.4 123.0 0.0 -4,-1 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000024287 Thoc1 ENSMUST00000234975 ENSMUSP00000157070 TRANSLATION protein_coding start - - 385.0 0.0 2.5 0.0 246.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000024287 Thoc1 ENSMUST00000234600 - NO_TRANSLATION retained_intron ENSMUSG00000024287 Thoc1 ENSMUST00000234370 - NO_TRANSLATION retained_intron ENSMUSG00000024287 Thoc1 ENSMUST00000025137 ENSMUSP00000025137 TRANSLATION protein_coding - CCDS37733.1 1 657.0 0.0 4.35 17.1 554.8 0.0 -4,-7 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000024287 Thoc1 ENSMUST00000234423 - NO_TRANSLATION retained_intron ENSMUSG00000024287 Thoc1 ENSMUST00000234111 - NO_TRANSLATION retained_intron ENSMUSG00000024287 Thoc1 ENSMUST00000234622 - NO_TRANSLATION retained_intron ENSMUSG00000024287 Thoc1 ENSMUST00000234324 - NO_TRANSLATION retained_intron ENSMUSG00000024287 Thoc1 ENSMUST00000234901 - NO_TRANSLATION retained_intron ENSMUSG00000024287 Thoc1 ENSMUST00000234805 - NO_TRANSLATION retained_intron ENSMUSG00000024287 Thoc1 ENSMUST00000234330 - NO_TRANSLATION retained_intron ENSMUSG00000024287 Thoc1 ENSMUST00000234890 - NO_TRANSLATION retained_intron ENSMUSG00000024287 Thoc1 ENSMUST00000235035 - NO_TRANSLATION retained_intron ENSMUSG00000109901 Chmp1b ENSMUST00000210564 ENSMUSP00000147285 TRANSLATION protein_coding - CCDS84391.1 - 199.0 0.0 1.0 34.9 59.6 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000024481 Lvrn ENSMUST00000234519 ENSMUSP00000157186 TRANSLATION protein_coding - - - 559.0 15.0 6.35 0.0 229.8 0.0 1,-3 0.0019 3 6.0 MINOR ENSMUSG00000024481 Lvrn ENSMUST00000025358 ENSMUSP00000025358 TRANSLATION protein_coding - CCDS50284.1 5 991.0 15.0 12.33 0.0 447.4 0.0 1,-3 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000046387 Pcdhb17 ENSMUST00000053856 ENSMUSP00000055072 TRANSLATION protein_coding - CCDS29183.1 - 799.0 51.0 1.0 8.3 448.9 0.0 2,-2 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000073639 Rab18 ENSMUST00000234626 ENSMUSP00000157198 TRANSLATION protein_coding - - - 212.0 24.0 5.83 31.7 182.7 0.0 -4,-6 0.8002 11 17.182 ALTERNATIVE:1 ENSMUSG00000073639 Rab18 ENSMUST00000097680 ENSMUSP00000095285 TRANSLATION protein_coding - - 1 194.0 24.0 3.75 1.1 156.9 0.0 -4,-6 0.0065 7 7.854 MINOR ENSMUSG00000073639 Rab18 ENSMUST00000234720 ENSMUSP00000157334 TRANSLATION nonsense_mediated_decay - - - 41.0 7.0 0.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000073639 Rab18 ENSMUST00000234356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073639 Rab18 ENSMUST00000234810 ENSMUSP00000157011 TRANSLATION protein_coding - CCDS29044.1 - 206.0 24.0 5.5 32.9 194.2 0.0 -4,-6 1.0 11 17.34 PRINCIPAL:4 ENSMUSG00000024454 Hdac3 ENSMUST00000235700 ENSMUSP00000157755 TRANSLATION nonsense_mediated_decay - - - 75.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024454 Hdac3 ENSMUST00000236756 ENSMUSP00000158234 TRANSLATION nonsense_mediated_decay - - - 120.0 0.0 1.58 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024454 Hdac3 ENSMUST00000043498 ENSMUSP00000037981 TRANSLATION protein_coding - CCDS37785.1 1 428.0 3.0 11.41 33.9 266.1 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000024454 Hdac3 ENSMUST00000144471 - NO_TRANSLATION retained_intron ENSMUSG00000024454 Hdac3 ENSMUST00000143660 - NO_TRANSLATION retained_intron ENSMUSG00000024454 Hdac3 ENSMUST00000153945 - NO_TRANSLATION retained_intron ENSMUSG00000024644 Cndp2 ENSMUST00000236029 - NO_TRANSLATION retained_intron ENSMUSG00000024644 Cndp2 ENSMUST00000025546 ENSMUSP00000025546 TRANSLATION protein_coding - CCDS29383.1 1 475.0 9.0 10.0 34.0 170.4 0.0 -4,-5 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000024644 Cndp2 ENSMUST00000235149 - NO_TRANSLATION retained_intron ENSMUSG00000024644 Cndp2 ENSMUST00000236415 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024644 Cndp2 ENSMUST00000236125 ENSMUSP00000157733 TRANSLATION protein_coding stop - - 122.0 3.0 2.75 0.0 0.0 0.0 -4,-5 0.0281 8 -2.0 MINOR ENSMUSG00000024644 Cndp2 ENSMUST00000237605 ENSMUSP00000157816 TRANSLATION protein_coding stop - - 20.0 3.0 0.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024644 Cndp2 ENSMUST00000168419 ENSMUSP00000128696 TRANSLATION protein_coding - CCDS29383.1 1 475.0 9.0 10.0 34.0 170.4 0.0 -4,-5 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000024644 Cndp2 ENSMUST00000235534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024644 Cndp2 ENSMUST00000237533 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043458 Pcdhb12 ENSMUST00000055495 ENSMUSP00000050357 TRANSLATION protein_coding - CCDS79621.1 - 789.0 56.0 1.0 0.0 459.1 0.0 2,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000055561 Spink5 ENSMUST00000069245 ENSMUSP00000066214 TRANSLATION protein_coding - CCDS37805.1 1 1017.0 0.0 6.65 0.4 291.8 0.0 0,-3 1.0 40 12.0 PRINCIPAL:1 ENSMUSG00000024420 Zfp521 ENSMUST00000234502 - NO_TRANSLATION retained_intron ENSMUSG00000024420 Zfp521 ENSMUST00000234410 ENSMUSP00000157321 TRANSLATION protein_coding - CCDS37740.1 - 1311.0 94.0 2.17 11.8 197.8 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000024420 Zfp521 ENSMUST00000234523 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024420 Zfp521 ENSMUST00000234480 ENSMUSP00000157232 TRANSLATION nonsense_mediated_decay start - - 540.0 35.0 1.788 0.0 75.7 0.0 -4,-5 0.0021 - -2.0 MINOR ENSMUSG00000024420 Zfp521 ENSMUST00000025288 ENSMUSP00000025288 TRANSLATION protein_coding - CCDS37740.1 1 1311.0 94.0 2.17 11.8 197.8 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000024420 Zfp521 ENSMUST00000234025 ENSMUSP00000157169 TRANSLATION protein_coding stop - - 101.0 6.0 0.6 0.0 23.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024420 Zfp521 ENSMUST00000234237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024571 Naa12 ENSMUST00000145116 - NO_TRANSLATION retained_intron ENSMUSG00000024571 Naa12 ENSMUST00000126177 - NO_TRANSLATION retained_intron ENSMUSG00000024571 Naa12 ENSMUST00000155879 - NO_TRANSLATION retained_intron ENSMUSG00000024571 Naa12 ENSMUST00000153363 ENSMUSP00000158291 TRANSLATION protein_coding - - 1 220.0 21.0 1.0 4.3 56.6 0.0 -4,-5 0.9349 2 20.0 PRINCIPAL:1 ENSMUSG00000024571 Naa12 ENSMUST00000125352 - NO_TRANSLATION retained_intron ENSMUSG00000024571 Naa12 ENSMUST00000127234 ENSMUSP00000121883 TRANSLATION protein_coding - - 1 220.0 21.0 1.0 4.3 56.6 0.0 -4,-5 0.9349 2 20.0 PRINCIPAL:1 ENSMUSG00000024571 Naa12 ENSMUST00000025463 ENSMUSP00000025463 TRANSLATION protein_coding - - 1 220.0 21.0 1.0 4.3 56.6 0.0 -4,-5 0.9349 2 20.0 PRINCIPAL:1 ENSMUSG00000024571 Naa12 ENSMUST00000156400 ENSMUSP00000157552 TRANSLATION protein_coding - - 3 220.0 21.0 1.0 4.3 56.6 0.0 -4,-5 0.9349 2 20.0 PRINCIPAL:1 ENSMUSG00000024571 Naa12 ENSMUST00000125127 ENSMUSP00000123193 TRANSLATION protein_coding - - 1 220.0 21.0 1.0 4.3 56.6 0.0 -4,-5 0.9349 2 20.0 PRINCIPAL:1 ENSMUSG00000044906 4930503L19Rik ENSMUST00000212074 ENSMUSP00000148343 TRANSLATION protein_coding - - 1 357.0 0.0 0.0 0.0 93.6 0.0 -3,-1 0.3631 - 2.0 MINOR ENSMUSG00000044906 4930503L19Rik ENSMUST00000067556 ENSMUSP00000065118 TRANSLATION protein_coding - CCDS29333.1 1 526.0 0.0 0.0 0.0 131.7 0.0 -3,-1 0.2831 - 1.334 PRINCIPAL:4 ENSMUSG00000044906 4930503L19Rik ENSMUST00000237800 - NO_TRANSLATION retained_intron ENSMUSG00000044906 4930503L19Rik ENSMUST00000212155 ENSMUSP00000148818 TRANSLATION protein_coding - - 1 482.0 0.0 0.0 0.0 131.7 0.0 -3,-1 0.0926 - 1.334 ALTERNATIVE:2 ENSMUSG00000044906 4930503L19Rik ENSMUST00000212982 ENSMUSP00000148769 TRANSLATION protein_coding - - 1 401.0 0.0 0.0 0.0 131.7 0.0 -3,-1 0.0909 - 1.334 ALTERNATIVE:2 ENSMUSG00000044906 4930503L19Rik ENSMUST00000212683 ENSMUSP00000148553 TRANSLATION nonsense_mediated_decay - - 1 377.0 0.0 0.0 0.0 81.5 0.0 -3,-1 0.0024 - -2.0 MINOR ENSMUSG00000044906 4930503L19Rik ENSMUST00000211817 ENSMUSP00000148747 TRANSLATION protein_coding - - 1 258.0 0.0 0.0 0.0 48.0 0.0 -3,-1 0.0008 - 0.0 MINOR ENSMUSG00000044906 4930503L19Rik ENSMUST00000212539 ENSMUSP00000148552 TRANSLATION nonsense_mediated_decay - - 1 293.0 0.0 0.0 0.0 81.5 0.0 -3,-1 0.0015 - -2.0 MINOR ENSMUSG00000044906 4930503L19Rik ENSMUST00000213066 - NO_TRANSLATION retained_intron ENSMUSG00000032905 Atg12 ENSMUST00000234430 - NO_TRANSLATION retained_intron ENSMUSG00000032905 Atg12 ENSMUST00000035648 ENSMUSP00000038489 TRANSLATION protein_coding - CCDS37811.1 1 141.0 0.0 2.25 11.8 139.1 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000032905 Atg12 ENSMUST00000234830 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000234918 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000234931 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000234310 ENSMUSP00000157374 TRANSLATION nonsense_mediated_decay start - - 136.0 0.0 0.3 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024404 Riok3 ENSMUST00000235106 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000234985 ENSMUSP00000157181 TRANSLATION protein_coding start - - 156.0 5.0 2.65 0.0 105.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000024404 Riok3 ENSMUST00000025270 ENSMUSP00000025270 TRANSLATION protein_coding - CCDS29062.1 1 519.0 21.0 5.45 14.5 249.5 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000024404 Riok3 ENSMUST00000235084 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000235060 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024404 Riok3 ENSMUST00000234006 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000234762 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000234563 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000234021 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000234709 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000234148 ENSMUSP00000157045 TRANSLATION nonsense_mediated_decay - - - 272.0 7.0 1.1 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024404 Riok3 ENSMUST00000234415 ENSMUSP00000157248 TRANSLATION nonsense_mediated_decay start - - 61.0 3.0 0.8 0.0 66.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024404 Riok3 ENSMUST00000234967 - NO_TRANSLATION retained_intron ENSMUSG00000024404 Riok3 ENSMUST00000234652 - NO_TRANSLATION retained_intron ENSMUSG00000045062 Pcdhb7 ENSMUST00000053037 ENSMUSP00000051041 TRANSLATION protein_coding - CCDS50257.1 - 829.0 50.0 0.8 0.0 439.5 0.0 -4,0 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033323 Ctdp1 ENSMUST00000160434 ENSMUSP00000157414 TRANSLATION protein_coding - - 3 155.0 0.0 0.8 0.0 245.0 0.0 -4,-5 0.0 2 1.122 MINOR ENSMUSG00000033323 Ctdp1 ENSMUST00000161003 ENSMUSP00000123705 TRANSLATION protein_coding - - 1 172.0 0.0 0.8 0.0 265.6 0.0 -4,-6 0.0 2 1.122 MINOR ENSMUSG00000033323 Ctdp1 ENSMUST00000036229 ENSMUSP00000038938 TRANSLATION protein_coding - CCDS29368.1 1 960.0 3.0 3.24 0.0 499.7 0.0 -4,-5 1.0 18 15.0 PRINCIPAL:1 ENSMUSG00000007480 Mc5r ENSMUST00000172148 ENSMUSP00000130497 TRANSLATION protein_coding - - 1 325.0 0.0 1.0 19.8 112.0 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025428 Atp5f1a ENSMUST00000146869 - NO_TRANSLATION retained_intron ENSMUSG00000025428 Atp5f1a ENSMUST00000114748 ENSMUSP00000110396 TRANSLATION protein_coding - - 1 503.0 13.0 11.08 2.1 310.6 0.0 -4,-5 0.2083 25 18.132 MINOR ENSMUSG00000025428 Atp5f1a ENSMUST00000135678 ENSMUSP00000120436 TRANSLATION nonsense_mediated_decay - - 5 89.0 0.0 0.75 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000025428 Atp5f1a ENSMUST00000128073 - NO_TRANSLATION retained_intron ENSMUSG00000025428 Atp5f1a ENSMUST00000026495 ENSMUSP00000026495 TRANSLATION protein_coding - CCDS29358.1 1 553.0 13.0 11.08 34.2 310.6 0.0 -4,0 1.0 26 22.0 PRINCIPAL:1 ENSMUSG00000003779 Kif20a ENSMUST00000235174 - NO_TRANSLATION retained_intron ENSMUSG00000003779 Kif20a ENSMUST00000166044 ENSMUSP00000132659 TRANSLATION protein_coding - CCDS29131.1 1 887.0 11.0 11.024 8.7 353.3 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000003779 Kif20a ENSMUST00000167161 ENSMUSP00000130045 TRANSLATION protein_coding - CCDS29131.1 1 887.0 11.0 11.024 8.7 353.3 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000003779 Kif20a ENSMUST00000237407 ENSMUSP00000157839 TRANSLATION protein_coding - CCDS29131.1 - 887.0 11.0 11.024 8.7 353.3 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000003779 Kif20a ENSMUST00000236114 ENSMUSP00000157757 TRANSLATION protein_coding start/stop - - 277.0 1.0 3.975 0.0 132.8 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000003779 Kif20a ENSMUST00000237481 ENSMUSP00000158507 TRANSLATION nonsense_mediated_decay - - - 312.0 10.0 3.7 0.0 97.8 0.0 -4,-5 0.0017 2 -2.0 MINOR ENSMUSG00000024576 Csnk1a1 ENSMUST00000165721 ENSMUSP00000132083 TRANSLATION protein_coding - - 1 337.0 20.0 9.0 30.2 96.4 0.0 -4,-6 0.9797 12 15.16 PRINCIPAL:4 ENSMUSG00000024576 Csnk1a1 ENSMUST00000167187 ENSMUSP00000127463 TRANSLATION protein_coding - - 5 353.0 20.0 8.4375 33.8 85.8 0.0 -4,-6 0.8069 13 14.462 MINOR ENSMUSG00000024576 Csnk1a1 ENSMUST00000165381 - NO_TRANSLATION retained_intron ENSMUSG00000024576 Csnk1a1 ENSMUST00000165123 ENSMUSP00000128871 TRANSLATION protein_coding - CCDS37838.1 1 325.0 20.0 9.0 20.3 96.4 0.0 -4,-6 1.0 12 14.0 MINOR ENSMUSG00000024576 Csnk1a1 ENSMUST00000170482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024576 Csnk1a1 ENSMUST00000164253 ENSMUSP00000129295 TRANSLATION protein_coding start - 3 159.0 0.0 4.132 0.0 0.0 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000024576 Csnk1a1 ENSMUST00000166990 ENSMUSP00000131687 TRANSLATION protein_coding - - 5 374.0 20.0 9.0 0.0 96.4 0.0 -4,-6 0.0337 12 11.736 MINOR ENSMUSG00000024576 Csnk1a1 ENSMUST00000163205 ENSMUSP00000127144 TRANSLATION protein_coding - - 1 336.0 20.0 9.0 30.2 96.4 0.0 -4,-6 0.9739 12 15.16 ALTERNATIVE:1 ENSMUSG00000024576 Csnk1a1 ENSMUST00000115246 ENSMUSP00000110901 TRANSLATION protein_coding - - 5 334.0 20.0 9.132 2.1 96.4 0.0 -4,-6 0.3106 12 12.128 MINOR ENSMUSG00000024576 Csnk1a1 ENSMUST00000170862 ENSMUSP00000127265 TRANSLATION protein_coding - - 5 365.0 20.0 8.4375 35.1 85.6 0.0 -4,-6 0.778 13 14.614 MINOR ENSMUSG00000103442 Pcdha1 ENSMUST00000070797 ENSMUSP00000068828 TRANSLATION protein_coding - CCDS37774.1 1 948.0 53.0 1.0 2.1 550.6 1.0 3,-4 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000103442 Pcdha1 ENSMUST00000193839 ENSMUSP00000142308 TRANSLATION protein_coding - - 1 902.0 53.0 1.0 1.0 462.9 1.0 3,-4 0.2471 - 12.738 MINOR ENSMUSG00000044646 Zbtb7c ENSMUST00000058997 ENSMUSP00000057856 TRANSLATION protein_coding - CCDS29349.1 1 619.0 15.0 0.6 11.6 152.0 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000044646 Zbtb7c ENSMUST00000236462 ENSMUSP00000157716 TRANSLATION nonsense_mediated_decay - CCDS29349.1 - 619.0 15.0 0.6 11.6 152.0 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000044646 Zbtb7c ENSMUST00000167921 ENSMUSP00000126808 TRANSLATION protein_coding - CCDS29349.1 1 619.0 15.0 0.6 11.6 152.0 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000041482 Piezo2 ENSMUST00000236438 - NO_TRANSLATION retained_intron ENSMUSG00000041482 Piezo2 ENSMUST00000182233 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041482 Piezo2 ENSMUST00000132576 ENSMUSP00000157610 TRANSLATION protein_coding start - 1 378.0 0.0 7.75 0.0 276.6 6.0 -4,-7 0.0028 - -2.0 MINOR ENSMUSG00000041482 Piezo2 ENSMUST00000182177 - NO_TRANSLATION retained_intron ENSMUSG00000041482 Piezo2 ENSMUST00000137141 ENSMUSP00000117107 TRANSLATION nonsense_mediated_decay start - 1 409.0 0.0 7.0 0.0 253.5 6.0 -4,-2 0.0028 - -2.0 MINOR ENSMUSG00000041482 Piezo2 ENSMUST00000238156 ENSMUSP00000157601 TRANSLATION protein_coding - - - 2690.0 0.0 23.955 0.0 674.0 25.0 1,-3 0.1995 - 3.836 MINOR ENSMUSG00000041482 Piezo2 ENSMUST00000123322 - NO_TRANSLATION retained_intron ENSMUSG00000041482 Piezo2 ENSMUST00000235659 - NO_TRANSLATION retained_intron ENSMUSG00000041482 Piezo2 ENSMUST00000046860 ENSMUSP00000036099 TRANSLATION protein_coding start/stop - 5 375.0 0.0 1.8 0.0 0.0 10.0 0,-4 0.003 - -2.0 MINOR ENSMUSG00000041482 Piezo2 ENSMUST00000047480 ENSMUSP00000040019 TRANSLATION protein_coding - CCDS29296.2 1 2824.0 0.0 25.705 0.1 876.2 26.0 1,-3 0.7505 - 8.0 ALTERNATIVE:2 ENSMUSG00000041482 Piezo2 ENSMUST00000238051 ENSMUSP00000157827 TRANSLATION protein_coding - - - 2778.0 0.0 25.705 1.0 876.2 26.0 1,-3 0.6016 - 8.0 ALTERNATIVE:2 ENSMUSG00000041482 Piezo2 ENSMUST00000235366 ENSMUSP00000158292 TRANSLATION protein_coding start/stop - - 230.0 0.0 0.25 0.0 0.0 5.0 -1,-5 0.003 - -2.0 MINOR ENSMUSG00000041482 Piezo2 ENSMUST00000182166 ENSMUSP00000138754 TRANSLATION protein_coding - - 5 644.0 0.0 0.8 0.0 0.0 11.0 1,-3 0.0051 - 0.0 MINOR ENSMUSG00000041482 Piezo2 ENSMUST00000183217 ENSMUSP00000138758 TRANSLATION protein_coding - - 5 2753.0 0.0 25.705 2.1 876.2 26.0 1,-3 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000041482 Piezo2 ENSMUST00000237812 - NO_TRANSLATION retained_intron ENSMUSG00000042942 Greb1l ENSMUST00000173356 - NO_TRANSLATION retained_intron ENSMUSG00000042942 Greb1l ENSMUST00000224958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042942 Greb1l ENSMUST00000172532 ENSMUSP00000134090 TRANSLATION protein_coding stop - 5 991.0 0.0 0.0 0.0 866.4 0.0 -4,-7 0.0793 1 -2.0 MINOR ENSMUSG00000042942 Greb1l ENSMUST00000048977 ENSMUSP00000049003 TRANSLATION protein_coding - CCDS37736.1 5 1913.0 0.0 0.0 0.1 3126.9 0.0 -4,-7 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000042942 Greb1l ENSMUST00000173261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042942 Greb1l ENSMUST00000174553 - NO_TRANSLATION retained_intron ENSMUSG00000042942 Greb1l ENSMUST00000172680 ENSMUSP00000134314 TRANSLATION nonsense_mediated_decay start - 5 129.0 0.0 0.0 0.0 162.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000051401 Kctd16 ENSMUST00000236301 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051401 Kctd16 ENSMUST00000235241 ENSMUSP00000158332 TRANSLATION protein_coding start - - 138.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000051401 Kctd16 ENSMUST00000237764 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051401 Kctd16 ENSMUST00000237456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051401 Kctd16 ENSMUST00000238039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051401 Kctd16 ENSMUST00000236525 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051401 Kctd16 ENSMUST00000091927 ENSMUSP00000089547 TRANSLATION protein_coding - CCDS50264.1 1 427.0 0.0 1.5 24.2 58.1 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000051401 Kctd16 ENSMUST00000236889 ENSMUSP00000158201 TRANSLATION protein_coding - CCDS50264.1 - 427.0 0.0 1.5 24.2 58.1 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000051401 Kctd16 ENSMUST00000237805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051401 Kctd16 ENSMUST00000096572 ENSMUSP00000094323 TRANSLATION protein_coding - - - 140.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - 0.0 MINOR ENSMUSG00000104318 Pcdha7 ENSMUST00000192631 ENSMUSP00000142156 TRANSLATION protein_coding - CCDS79619.1 1 937.0 49.0 1.0 2.0 500.7 0.0 1,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000024511 Rab27b ENSMUST00000117692 ENSMUSP00000112807 TRANSLATION protein_coding - CCDS29331.1 1 218.0 19.0 4.75 32.9 184.6 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000024511 Rab27b ENSMUST00000121693 ENSMUSP00000114094 TRANSLATION protein_coding - CCDS29331.1 1 218.0 19.0 4.75 32.9 184.6 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000024511 Rab27b ENSMUST00000069749 ENSMUSP00000068349 TRANSLATION protein_coding - CCDS29331.1 1 218.0 19.0 4.75 32.9 184.6 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000024511 Rab27b ENSMUST00000127217 - NO_TRANSLATION retained_intron ENSMUSG00000039840 Epg5 ENSMUST00000044622 ENSMUSP00000038681 TRANSLATION protein_coding - CCDS57126.1 5 2572.0 0.0 0.0 4.2 0.0 0.0 -4,-5 1.0 36 2.0 PRINCIPAL:1 ENSMUSG00000039840 Epg5 ENSMUST00000237997 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039840 Epg5 ENSMUST00000235433 - NO_TRANSLATION retained_intron ENSMUSG00000036941 Elac1 ENSMUST00000041138 ENSMUSP00000041793 TRANSLATION protein_coding - CCDS37855.1 1 362.0 8.0 3.0 22.5 41.7 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000102428 Pcdhga12 ENSMUST00000193045 - NO_TRANSLATION retained_intron ENSMUSG00000102428 Pcdhga12 ENSMUST00000044851 ENSMUSP00000036359 TRANSLATION protein_coding - CCDS29191.1 1 932.0 50.0 0.8 0.0 536.0 0.0 -3,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000073600 Prob1 ENSMUST00000237307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073600 Prob1 ENSMUST00000190196 ENSMUSP00000140465 TRANSLATION protein_coding - CCDS79611.1 - 1010.0 0.0 0.0 0.0 83.1 0.0 -3,1 1.0 19 6.0 PRINCIPAL:1 ENSMUSG00000073600 Prob1 ENSMUST00000097619 ENSMUSP00000095224 TRANSLATION protein_coding start - - 1006.0 0.0 0.0 0.0 83.1 0.0 -4,-1 0.3685 19 -2.0 MINOR ENSMUSG00000024619 Cdx1 ENSMUST00000025521 ENSMUSP00000025521 TRANSLATION protein_coding - CCDS29279.1 1 268.0 0.0 1.6 8.5 170.7 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000091896 Ube2d2a ENSMUST00000236484 ENSMUSP00000158165 TRANSLATION protein_coding start - - 92.0 0.0 2.99 0.0 95.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000091896 Ube2d2a ENSMUST00000235170 - NO_TRANSLATION retained_intron ENSMUSG00000091896 Ube2d2a ENSMUST00000236235 - NO_TRANSLATION retained_intron ENSMUSG00000091896 Ube2d2a ENSMUST00000237482 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091896 Ube2d2a ENSMUST00000235516 - NO_TRANSLATION retained_intron ENSMUSG00000091896 Ube2d2a ENSMUST00000236550 ENSMUSP00000157903 TRANSLATION protein_coding start - - 93.0 0.0 2.91 0.0 96.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000091896 Ube2d2a ENSMUST00000235351 - NO_TRANSLATION retained_intron ENSMUSG00000091896 Ube2d2a ENSMUST00000237984 ENSMUSP00000158464 TRANSLATION protein_coding stop - - 50.0 0.0 1.646 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000091896 Ube2d2a ENSMUST00000170693 ENSMUSP00000132446 TRANSLATION protein_coding - CCDS50254.1 1 147.0 0.0 4.82 34.9 181.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000043313 Pcdhb19 ENSMUST00000059571 ENSMUSP00000053326 TRANSLATION protein_coding - CCDS29185.1 - 801.0 55.0 1.0 0.1 437.4 0.0 -1,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000051599 Pcdhb2 ENSMUST00000193137 ENSMUSP00000141439 TRANSLATION protein_coding stop - 2 125.0 15.0 1.25 0.0 41.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051599 Pcdhb2 ENSMUST00000056522 ENSMUSP00000057921 TRANSLATION protein_coding - CCDS29170.1 - 799.0 56.0 3.25 6.8 458.0 0.0 -1,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000069324 Bhmt1b ENSMUST00000091776 ENSMUSP00000135956 TRANSLATION protein_coding - - - 407.0 0.0 1.0 22.3 170.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000045569 Mc2r ENSMUST00000052347 ENSMUSP00000058691 TRANSLATION protein_coding - CCDS29328.1 1 296.0 0.0 0.8 8.7 99.0 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044201 Cdc25c ENSMUST00000060710 ENSMUSP00000055427 TRANSLATION protein_coding - CCDS37759.1 1 447.0 0.0 5.15 0.1 38.7 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044201 Cdc25c ENSMUST00000237204 - NO_TRANSLATION retained_intron ENSMUSG00000044201 Cdc25c ENSMUST00000237620 ENSMUSP00000157977 TRANSLATION nonsense_mediated_decay - - - 183.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000044201 Cdc25c ENSMUST00000237034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044201 Cdc25c ENSMUST00000237822 - NO_TRANSLATION retained_intron ENSMUSG00000044201 Cdc25c ENSMUST00000236366 - NO_TRANSLATION retained_intron ENSMUSG00000024456 Diaph1 ENSMUST00000124822 - NO_TRANSLATION retained_intron ENSMUSG00000024456 Diaph1 ENSMUST00000127346 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024456 Diaph1 ENSMUST00000025337 ENSMUSP00000025337 TRANSLATION protein_coding - CCDS79635.1 5 1264.0 0.0 19.45 1.0 925.1 0.0 -4,-5 0.7135 35 8.0 ALTERNATIVE:2 ENSMUSG00000024456 Diaph1 ENSMUST00000115631 ENSMUSP00000111294 TRANSLATION protein_coding - CCDS84377.1 5 1220.0 0.0 19.45 0.0 925.1 0.0 -4,-5 0.6071 33 8.0 ALTERNATIVE:2 ENSMUSG00000024456 Diaph1 ENSMUST00000129688 - NO_TRANSLATION retained_intron ENSMUSG00000024456 Diaph1 ENSMUST00000115634 ENSMUSP00000111297 TRANSLATION protein_coding - CCDS57121.1 5 1255.0 0.0 19.45 1.0 925.1 0.0 -4,-5 1.0 35 8.0 PRINCIPAL:2 ENSMUSG00000005871 Apc ENSMUST00000066133 ENSMUSP00000064214 TRANSLATION protein_coding - - 1 324.0 0.0 3.73 0.0 180.5 0.0 -4,-5 0.0 8 0.0 MINOR ENSMUSG00000005871 Apc ENSMUST00000171187 ENSMUSP00000127131 TRANSLATION protein_coding stop - 5 1133.0 0.0 8.23 0.0 907.1 0.0 -2,-5 0.0624 26 -2.0 MINOR ENSMUSG00000005871 Apc ENSMUST00000163295 ENSMUSP00000129095 TRANSLATION nonsense_mediated_decay start - 5 21.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0228 - -2.0 MINOR ENSMUSG00000005871 Apc ENSMUST00000167136 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005871 Apc ENSMUST00000170195 - NO_TRANSLATION retained_intron ENSMUSG00000005871 Apc ENSMUST00000170023 - NO_TRANSLATION retained_intron ENSMUSG00000005871 Apc ENSMUST00000115781 ENSMUSP00000111447 TRANSLATION protein_coding - - 5 2808.0 0.0 9.98 0.0 2514.1 0.0 -4,-5 0.3688 62 8.0 ALTERNATIVE:2 ENSMUSG00000005871 Apc ENSMUST00000165590 ENSMUSP00000128327 TRANSLATION nonsense_mediated_decay start - 5 51.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0006 - -2.0 MINOR ENSMUSG00000005871 Apc ENSMUST00000079362 ENSMUSP00000078337 TRANSLATION protein_coding - CCDS29125.1 1 2842.0 0.0 9.98 2.9 2514.1 0.0 -4,-5 1.0 62 9.0 PRINCIPAL:2 ENSMUSG00000034295 Fhod3 ENSMUST00000234462 - NO_TRANSLATION retained_intron ENSMUSG00000034295 Fhod3 ENSMUST00000037097 ENSMUSP00000041361 TRANSLATION protein_coding - CCDS29104.1 1 1578.0 0.0 11.2 0.1 319.2 0.0 -4,-5 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000034295 Fhod3 ENSMUST00000234199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034295 Fhod3 ENSMUST00000234526 ENSMUSP00000157193 TRANSLATION protein_coding - - - 1546.0 0.0 11.2 0.1 319.2 0.0 -4,-5 0.3437 14 8.0 ALTERNATIVE:2 ENSMUSG00000034295 Fhod3 ENSMUST00000234834 ENSMUSP00000157226 TRANSLATION protein_coding - - - 1427.0 0.0 11.2 0.4 319.2 0.0 -4,-5 0.293 13 8.0 ALTERNATIVE:2 ENSMUSG00000038418 Egr1 ENSMUST00000064795 ENSMUSP00000069616 TRANSLATION protein_coding - CCDS29136.1 1 533.0 12.0 0.4 2.5 251.0 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000059898 Dsc3 ENSMUST00000223946 ENSMUSP00000153279 TRANSLATION protein_coding stop - - 152.0 1.0 0.8 0.0 80.5 0.0 -1,-4 0.0 3 -2.0 MINOR ENSMUSG00000059898 Dsc3 ENSMUST00000225110 ENSMUSP00000153261 TRANSLATION protein_coding - CCDS37744.1 - 896.0 49.0 9.4 4.6 329.3 1.0 -1,-4 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000059898 Dsc3 ENSMUST00000115848 ENSMUSP00000111514 TRANSLATION protein_coding - - 2 839.0 49.0 9.4 4.6 301.1 1.0 -1,-4 0.5251 14 18.308 MINOR ENSMUSG00000034320 Slc26a2 ENSMUST00000181997 - NO_TRANSLATION retained_intron ENSMUSG00000034320 Slc26a2 ENSMUST00000146409 ENSMUSP00000119447 TRANSLATION protein_coding - CCDS29282.1 1 739.0 0.0 1.13 6.2 532.3 10.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000034320 Slc26a2 ENSMUST00000037603 ENSMUSP00000040163 TRANSLATION protein_coding - - 1 504.0 0.0 0.48 1.2 403.3 8.0 -2,-5 0.0276 4 2.626 MINOR ENSMUSG00000034320 Slc26a2 ENSMUST00000148829 ENSMUSP00000114419 TRANSLATION protein_coding stop - 1 225.0 0.0 0.32 0.0 99.9 1.0 -4,-5 0.0016 2 -2.0 MINOR ENSMUSG00000036452 Arhgap26 ENSMUST00000137497 ENSMUSP00000121197 TRANSLATION protein_coding - - 1 722.0 0.0 10.145 15.2 515.9 0.0 -4,-5 0.8823 14 10.576 ALTERNATIVE:1 ENSMUSG00000036452 Arhgap26 ENSMUST00000148399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036452 Arhgap26 ENSMUST00000123820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036452 Arhgap26 ENSMUST00000097593 ENSMUSP00000095200 TRANSLATION protein_coding - CCDS29205.1 5 814.0 0.0 10.409 10.7 515.9 0.0 -4,-5 0.9161 14 10.12 MINOR ENSMUSG00000036452 Arhgap26 ENSMUST00000141058 ENSMUSP00000119865 TRANSLATION protein_coding start - 2 144.0 0.0 0.598 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036452 Arhgap26 ENSMUST00000133247 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036452 Arhgap26 ENSMUST00000151757 ENSMUSP00000122448 TRANSLATION nonsense_mediated_decay start - 5 115.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036452 Arhgap26 ENSMUST00000115574 - NO_TRANSLATION retained_intron ENSMUSG00000036452 Arhgap26 ENSMUST00000155576 ENSMUSP00000122371 TRANSLATION protein_coding - - 5 759.0 0.0 10.145 19.3 515.9 0.0 -4,-5 1.0 14 11.472 PRINCIPAL:4 ENSMUSG00000036452 Arhgap26 ENSMUST00000235660 ENSMUSP00000157675 TRANSLATION protein_coding start - - 132.0 0.0 1.398 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000036452 Arhgap26 ENSMUST00000154551 ENSMUSP00000123145 TRANSLATION protein_coding start - 1 388.0 0.0 6.758 0.0 181.4 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000036452 Arhgap26 ENSMUST00000235817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024533 Spire1 ENSMUST00000045105 ENSMUSP00000049336 TRANSLATION protein_coding - CCDS29323.1 5 643.0 4.0 1.85 0.7 86.5 0.0 -4,-5 0.1183 12 6.682 MINOR ENSMUSG00000024533 Spire1 ENSMUST00000224799 ENSMUSP00000153492 TRANSLATION protein_coding - CCDS37849.1 - 515.0 4.0 0.5 0.0 0.0 0.0 -4,-5 0.0358 11 4.0 MINOR ENSMUSG00000024533 Spire1 ENSMUST00000224122 ENSMUSP00000153692 TRANSLATION protein_coding start - - 344.0 4.0 0.0 0.0 0.0 0.0 -4,-6 0.0029 4 -2.0 MINOR ENSMUSG00000024533 Spire1 ENSMUST00000224659 - NO_TRANSLATION retained_intron ENSMUSG00000024533 Spire1 ENSMUST00000226000 - NO_TRANSLATION retained_intron ENSMUSG00000024533 Spire1 ENSMUST00000115050 ENSMUSP00000110702 TRANSLATION protein_coding - - 1 743.0 4.0 3.51 1.5 262.3 0.0 -4,-5 0.8415 11 17.0 PRINCIPAL:1 ENSMUSG00000024533 Spire1 ENSMUST00000224189 - NO_TRANSLATION retained_intron ENSMUSG00000024533 Spire1 ENSMUST00000082243 ENSMUSP00000080871 TRANSLATION protein_coding - - 1 598.0 4.0 1.85 0.0 86.5 0.0 -4,-5 0.0127 11 6.682 MINOR ENSMUSG00000044024 Rell2 ENSMUST00000169498 ENSMUSP00000128949 TRANSLATION protein_coding stop - 3 179.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000044024 Rell2 ENSMUST00000177058 ENSMUSP00000135615 TRANSLATION protein_coding - CCDS29195.2 5 303.0 0.0 0.6 9.9 69.5 2.0 -3,-5 1.0 5 14.88 PRINCIPAL:1 ENSMUSG00000044024 Rell2 ENSMUST00000166531 - NO_TRANSLATION retained_intron ENSMUSG00000044024 Rell2 ENSMUST00000237652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044024 Rell2 ENSMUST00000091932 ENSMUSP00000089552 TRANSLATION protein_coding - - 2 294.0 0.0 0.6 1.1 69.5 2.0 -3,-5 0.2166 5 11.913 MINOR ENSMUSG00000044024 Rell2 ENSMUST00000164499 - NO_TRANSLATION retained_intron ENSMUSG00000044024 Rell2 ENSMUST00000235611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044024 Rell2 ENSMUST00000163128 ENSMUSP00000127234 TRANSLATION nonsense_mediated_decay - - 5 86.0 0.0 0.6 0.0 70.9 2.0 -3,-5 0.0558 - -2.0 MINOR ENSMUSG00000044024 Rell2 ENSMUST00000176104 ENSMUSP00000135556 TRANSLATION protein_coding - CCDS29195.2 5 303.0 0.0 0.6 9.9 69.5 2.0 -3,-5 1.0 5 14.88 PRINCIPAL:1 ENSMUSG00000044024 Rell2 ENSMUST00000236289 - NO_TRANSLATION retained_intron ENSMUSG00000044024 Rell2 ENSMUST00000169360 ENSMUSP00000129880 TRANSLATION protein_coding stop - 5 135.0 0.0 0.6 0.0 69.5 2.0 -3,-5 0.059 1 -2.0 MINOR ENSMUSG00000044024 Rell2 ENSMUST00000168056 ENSMUSP00000130051 TRANSLATION nonsense_mediated_decay - - 5 148.0 0.0 0.6 0.0 69.5 2.0 -3,-5 0.0561 - -2.0 MINOR ENSMUSG00000044024 Rell2 ENSMUST00000070709 ENSMUSP00000070280 TRANSLATION protein_coding - CCDS29195.2 1 303.0 0.0 0.6 9.9 69.5 2.0 -3,-5 1.0 5 14.88 PRINCIPAL:1 ENSMUSG00000044024 Rell2 ENSMUST00000163591 ENSMUSP00000129299 TRANSLATION protein_coding - - 5 212.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.0017 4 0.0 MINOR ENSMUSG00000044024 Rell2 ENSMUST00000176902 ENSMUSP00000135176 TRANSLATION protein_coding - - 5 208.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 4 0.0 MINOR ENSMUSG00000024578 Il17b ENSMUST00000025471 ENSMUSP00000025471 TRANSLATION protein_coding - CCDS29286.1 1 180.0 0.0 2.0 9.9 92.9 0.0 3,-1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000024578 Il17b ENSMUST00000237575 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024578 Il17b ENSMUST00000235713 ENSMUSP00000157496 TRANSLATION nonsense_mediated_decay - - - 74.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000045730 Adrb2 ENSMUST00000053640 ENSMUSP00000062256 TRANSLATION protein_coding - CCDS29289.1 - 418.0 0.0 1.0 10.0 243.5 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000052928 Ctif ENSMUST00000165559 ENSMUSP00000129974 TRANSLATION protein_coding - CCDS37861.1 5 623.0 0.0 3.5 0.8 97.2 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000052928 Ctif ENSMUST00000235147 - NO_TRANSLATION retained_intron ENSMUSG00000041840 Haus1 ENSMUST00000048192 ENSMUSP00000035826 TRANSLATION protein_coding - CCDS29357.1 1 278.0 0.0 6.4 8.9 0.0 0.0 -4,-5 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000041840 Haus1 ENSMUST00000236234 ENSMUSP00000158336 TRANSLATION protein_coding - - - 293.0 0.0 6.4 0.0 0.0 0.0 -4,-5 0.0353 9 6.0 MINOR ENSMUSG00000041840 Haus1 ENSMUST00000236575 - NO_TRANSLATION retained_intron ENSMUSG00000024525 Impa2 ENSMUST00000236637 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024525 Impa2 ENSMUST00000235632 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024525 Impa2 ENSMUST00000025403 ENSMUSP00000025403 TRANSLATION protein_coding - CCDS29320.1 1 290.0 9.0 7.5 8.2 272.8 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000024525 Impa2 ENSMUST00000237149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024552 Slc14a2 ENSMUST00000237674 ENSMUSP00000157851 TRANSLATION protein_coding - CCDS29361.1 - 930.0 0.0 14.1 3.7 715.5 29.0 -4,-5 1.0 2 12.964 PRINCIPAL:1 ENSMUSG00000024552 Slc14a2 ENSMUST00000237290 ENSMUSP00000157855 TRANSLATION protein_coding - - - 397.0 0.0 6.9 3.8 368.3 13.0 -4,-5 0.4009 2 1.0 MINOR ENSMUSG00000024552 Slc14a2 ENSMUST00000236281 - NO_TRANSLATION retained_intron ENSMUSG00000024552 Slc14a2 ENSMUST00000025434 ENSMUSP00000025434 TRANSLATION protein_coding - CCDS29361.1 5 930.0 0.0 14.1 3.7 715.5 29.0 -4,-5 1.0 2 12.964 PRINCIPAL:1 ENSMUSG00000024552 Slc14a2 ENSMUST00000163367 ENSMUSP00000126416 TRANSLATION protein_coding - CCDS50331.1 1 323.0 0.0 6.5 0.0 326.0 15.0 -1,-3 0.0238 - 0.0 MINOR ENSMUSG00000024552 Slc14a2 ENSMUST00000235389 ENSMUSP00000158141 TRANSLATION protein_coding - - - 461.0 0.0 7.2 3.1 347.2 16.0 -4,-5 0.3294 - 0.75 MINOR ENSMUSG00000073598 Smim33 ENSMUST00000097617 ENSMUSP00000095222 TRANSLATION protein_coding - CCDS50252.1 1 127.0 0.0 0.0 2.4 0.0 0.0 -4,-7 0.9013 - 1.0 PRINCIPAL:1 ENSMUSG00000073598 Smim33 ENSMUST00000143778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036223 Ska1 ENSMUST00000177604 ENSMUSP00000137357 TRANSLATION protein_coding - CCDS29341.1 1 254.0 0.0 4.95 12.4 282.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036223 Ska1 ENSMUST00000040188 ENSMUSP00000049156 TRANSLATION protein_coding - CCDS29341.1 1 254.0 0.0 4.95 12.4 282.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000036223 Ska1 ENSMUST00000237276 ENSMUSP00000157837 TRANSLATION nonsense_mediated_decay - - - 78.0 0.0 1.75 0.0 37.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036299 BC031181 ENSMUST00000235420 - NO_TRANSLATION retained_intron ENSMUSG00000036299 BC031181 ENSMUST00000237263 ENSMUSP00000158256 TRANSLATION protein_coding - CCDS37859.1 - 72.0 0.0 0.4 11.4 50.5 0.0 -2,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000036299 BC031181 ENSMUST00000236421 ENSMUSP00000157657 TRANSLATION protein_coding - CCDS37859.1 - 72.0 0.0 0.4 11.4 50.5 0.0 -2,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000036299 BC031181 ENSMUST00000040284 ENSMUSP00000040450 TRANSLATION protein_coding - CCDS37859.1 1 72.0 0.0 0.4 11.4 50.5 0.0 -2,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000024395 Lims2 ENSMUST00000234549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024395 Lims2 ENSMUST00000234678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024395 Lims2 ENSMUST00000225125 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024395 Lims2 ENSMUST00000224328 ENSMUSP00000153433 TRANSLATION protein_coding start - - 59.0 5.0 1.646 0.0 28.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024395 Lims2 ENSMUST00000226112 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024395 Lims2 ENSMUST00000223753 ENSMUSP00000153122 TRANSLATION protein_coding stop - - 206.0 12.0 2.66 0.0 52.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024395 Lims2 ENSMUST00000225470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024395 Lims2 ENSMUST00000233994 ENSMUSP00000157357 TRANSLATION protein_coding stop - - 164.0 20.0 4.08 0.0 124.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024395 Lims2 ENSMUST00000225404 ENSMUSP00000153218 TRANSLATION nonsense_mediated_decay - - - 37.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024395 Lims2 ENSMUST00000225400 - NO_TRANSLATION retained_intron ENSMUSG00000024395 Lims2 ENSMUST00000025254 ENSMUSP00000025254 TRANSLATION protein_coding - CCDS29113.1 1 341.0 35.0 8.91 17.0 233.0 0.0 -4,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000024395 Lims2 ENSMUST00000224383 ENSMUSP00000152960 TRANSLATION protein_coding stop - - 153.0 18.0 3.75 0.0 99.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000059455 Plac8l1 ENSMUST00000236636 ENSMUSP00000158338 TRANSLATION protein_coding - - - 92.0 0.0 0.798 0.0 0.0 0.0 -4,-7 0.0 - 1.842 MINOR ENSMUSG00000059455 Plac8l1 ENSMUST00000081374 ENSMUSP00000080111 TRANSLATION protein_coding - CCDS50266.1 1 177.0 0.0 2.6 7.5 44.8 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000008301 Phax ENSMUST00000130163 ENSMUSP00000122948 TRANSLATION protein_coding - CCDS50292.1 1 363.0 0.0 2.55 0.0 115.4 0.0 -4,-2 0.334 6 8.0 ALTERNATIVE:2 ENSMUSG00000008301 Phax ENSMUST00000132628 ENSMUSP00000119047 TRANSLATION protein_coding start/stop - 5 251.0 0.0 1.0 0.0 52.7 0.0 -4,0 0.0007 3 -2.0 MINOR ENSMUSG00000008301 Phax ENSMUST00000008445 ENSMUSP00000008445 TRANSLATION protein_coding - CCDS29259.1 1 385.0 0.0 2.55 0.1 115.4 0.0 -4,-5 1.0 6 8.0 PRINCIPAL:2 ENSMUSG00000050945 Zfp438 ENSMUST00000063989 ENSMUSP00000067049 TRANSLATION protein_coding - CCDS37721.1 1 798.0 16.0 0.165 0.1 0.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050945 Zfp438 ENSMUST00000234411 - NO_TRANSLATION retained_intron ENSMUSG00000050945 Zfp438 ENSMUST00000234241 ENSMUSP00000156983 TRANSLATION protein_coding - CCDS37721.1 - 798.0 16.0 0.165 0.1 0.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000090942 F830016B08Rik ENSMUST00000171297 ENSMUSP00000131437 TRANSLATION protein_coding - CCDS50297.1 1 416.0 12.0 1.0 0.0 431.8 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000073565 Prr16 ENSMUST00000235541 ENSMUSP00000158421 TRANSLATION nonsense_mediated_decay - CCDS37818.1 - 304.0 0.0 1.0 16.9 256.9 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000073565 Prr16 ENSMUST00000116639 ENSMUSP00000112338 TRANSLATION protein_coding - CCDS37818.1 1 304.0 0.0 1.0 16.9 256.9 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000001700 Gramd2b ENSMUST00000237422 ENSMUSP00000157609 TRANSLATION protein_coding - - - 445.0 0.0 1.835 6.2 64.8 1.0 -4,-7 0.692 7 13.695 MINOR ENSMUSG00000001700 Gramd2b ENSMUST00000237355 ENSMUSP00000157710 TRANSLATION protein_coding - CCDS50290.1 - 432.0 0.0 1.835 10.2 64.8 1.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000001700 Gramd2b ENSMUST00000237716 - NO_TRANSLATION retained_intron ENSMUSG00000001700 Gramd2b ENSMUST00000070166 ENSMUSP00000068453 TRANSLATION protein_coding - CCDS50290.1 1 432.0 0.0 1.835 10.2 64.8 1.0 -4,-5 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000001700 Gramd2b ENSMUST00000235794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040560 Wdr7 ENSMUST00000235428 ENSMUSP00000157794 TRANSLATION protein_coding start/stop - - 178.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000040560 Wdr7 ENSMUST00000236879 ENSMUSP00000158252 TRANSLATION protein_coding - - - 1457.0 0.0 5.125 17.9 70.6 0.0 -4,-7 0.897 42 12.0 ALTERNATIVE:1 ENSMUSG00000040560 Wdr7 ENSMUST00000235648 ENSMUSP00000157457 TRANSLATION protein_coding - - - 531.0 0.0 2.707 0.0 34.5 0.0 -4,-7 0.0009 17 1.83 MINOR ENSMUSG00000040560 Wdr7 ENSMUST00000236956 ENSMUSP00000157696 TRANSLATION nonsense_mediated_decay - - - 488.0 0.0 2.107 0.0 13.6 0.0 -4,-7 0.0 17 -2.0 MINOR ENSMUSG00000040560 Wdr7 ENSMUST00000238193 - NO_TRANSLATION retained_intron ENSMUSG00000040560 Wdr7 ENSMUST00000072726 ENSMUSP00000072509 TRANSLATION protein_coding - CCDS50307.1 1 1489.0 0.0 5.125 17.9 70.6 0.0 -4,-7 1.0 43 12.0 PRINCIPAL:3 ENSMUSG00000073574 Grxcr2 ENSMUST00000097591 ENSMUSP00000095198 TRANSLATION protein_coding - CCDS29209.1 1 254.0 8.0 0.0 5.1 0.0 0.0 -4,-5 0.9429 - 8.0 PRINCIPAL:1 ENSMUSG00000005836 Gata6 ENSMUST00000234512 ENSMUSP00000157117 TRANSLATION protein_coding stop - - 63.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000005836 Gata6 ENSMUST00000047762 ENSMUSP00000041774 TRANSLATION protein_coding - CCDS29059.1 1 589.0 8.0 3.0 5.7 308.1 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000005836 Gata6 ENSMUST00000234971 - NO_TRANSLATION retained_intron ENSMUSG00000005836 Gata6 ENSMUST00000231831 - NO_TRANSLATION retained_intron ENSMUSG00000005836 Gata6 ENSMUST00000235081 ENSMUSP00000157128 TRANSLATION protein_coding stop - - 161.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000005836 Gata6 ENSMUST00000234722 - NO_TRANSLATION retained_intron ENSMUSG00000032688 Malt1 ENSMUST00000225659 - NO_TRANSLATION retained_intron ENSMUSG00000032688 Malt1 ENSMUST00000224265 ENSMUSP00000158550 TRANSLATION nonsense_mediated_decay - - - 342.0 0.0 5.808 0.0 97.0 0.0 -4,-2 0.0 7 -2.0 MINOR ENSMUSG00000032688 Malt1 ENSMUST00000235209 - NO_TRANSLATION retained_intron ENSMUSG00000032688 Malt1 ENSMUST00000049248 ENSMUSP00000048376 TRANSLATION protein_coding - CCDS29306.1 1 821.0 0.0 13.058 2.3 159.4 0.0 -4,-2 1.0 14 8.868 PRINCIPAL:4 ENSMUSG00000032688 Malt1 ENSMUST00000224229 - NO_TRANSLATION retained_intron ENSMUSG00000032688 Malt1 ENSMUST00000236314 ENSMUSP00000158449 TRANSLATION nonsense_mediated_decay start - - 98.0 0.0 1.33 0.0 32.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032688 Malt1 ENSMUST00000237488 ENSMUSP00000158079 TRANSLATION nonsense_mediated_decay start - - 170.0 0.0 3.328 0.0 49.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032688 Malt1 ENSMUST00000225085 - NO_TRANSLATION retained_intron ENSMUSG00000032688 Malt1 ENSMUST00000237739 - NO_TRANSLATION retained_intron ENSMUSG00000032688 Malt1 ENSMUST00000235999 - NO_TRANSLATION retained_intron ENSMUSG00000032688 Malt1 ENSMUST00000236284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032688 Malt1 ENSMUST00000224056 ENSMUSP00000153585 TRANSLATION protein_coding - - - 832.0 0.0 13.124 2.3 159.4 0.0 -4,-2 0.8746 14 9.0 ALTERNATIVE:2 ENSMUSG00000032688 Malt1 ENSMUST00000236050 - NO_TRANSLATION retained_intron ENSMUSG00000024579 Pcyox1l ENSMUST00000025472 ENSMUSP00000025472 TRANSLATION protein_coding - CCDS29287.1 1 495.0 30.0 5.0 2.2 524.5 0.0 1,-3 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000024579 Pcyox1l ENSMUST00000154763 - NO_TRANSLATION retained_intron ENSMUSG00000024579 Pcyox1l ENSMUST00000195229 ENSMUSP00000142249 TRANSLATION nonsense_mediated_decay - - 5 111.0 16.0 1.0 0.0 45.1 0.0 1,-3 0.001 2 -2.0 MINOR ENSMUSG00000024513 Mbd2 ENSMUST00000128555 - NO_TRANSLATION retained_intron ENSMUSG00000024513 Mbd2 ENSMUST00000127260 ENSMUSP00000120508 TRANSLATION nonsense_mediated_decay start - 3 72.0 0.0 0.0 0.0 79.7 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024513 Mbd2 ENSMUST00000074058 ENSMUSP00000073701 TRANSLATION protein_coding - CCDS29335.1 1 414.0 0.0 3.8 2.4 300.8 0.0 -4,-5 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000024513 Mbd2 ENSMUST00000133889 - NO_TRANSLATION retained_intron ENSMUSG00000024513 Mbd2 ENSMUST00000114946 ENSMUSP00000110596 TRANSLATION protein_coding - CCDS79661.1 1 249.0 0.0 1.2 0.0 81.5 0.0 -4,-5 0.0139 6 0.798 MINOR ENSMUSG00000104346 Pcdhga3 ENSMUST00000073447 ENSMUSP00000073150 TRANSLATION protein_coding - CCDS37781.1 1 928.0 43.0 0.8 0.0 510.9 0.0 1,-2 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000104148 Pcdha2 ENSMUST00000195590 ENSMUSP00000141355 TRANSLATION protein_coding - - 1 902.0 48.0 1.3 1.1 471.0 1.0 1,-2 0.2942 - 12.809 MINOR ENSMUSG00000104148 Pcdha2 ENSMUST00000115662 ENSMUSP00000111326 TRANSLATION protein_coding - CCDS37775.1 1 948.0 48.0 1.3 2.4 558.7 1.0 1,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000003778 Brd8 ENSMUST00000145431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003778 Brd8 ENSMUST00000153569 - NO_TRANSLATION retained_intron ENSMUSG00000003778 Brd8 ENSMUST00000115765 ENSMUSP00000111431 TRANSLATION protein_coding - - 1 954.0 0.0 2.0 0.0 74.5 0.0 -4,-6 0.2038 9 12.0 MINOR ENSMUSG00000003778 Brd8 ENSMUST00000115766 ENSMUSP00000111432 TRANSLATION protein_coding - CCDS70880.1 1 881.0 0.0 2.0 3.0 74.5 0.0 -4,-6 0.5021 9 12.822 MINOR ENSMUSG00000003778 Brd8 ENSMUST00000127159 - NO_TRANSLATION retained_intron ENSMUSG00000003778 Brd8 ENSMUST00000003876 ENSMUSP00000003876 TRANSLATION protein_coding - CCDS50248.1 1 951.0 0.0 2.0 8.3 74.5 0.0 -4,-6 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000003778 Brd8 ENSMUST00000097626 ENSMUSP00000095229 TRANSLATION protein_coding - CCDS70879.1 1 878.0 0.0 2.0 4.2 74.5 0.0 -4,-6 0.7194 10 13.314 MINOR ENSMUSG00000003778 Brd8 ENSMUST00000152612 - NO_TRANSLATION retained_intron ENSMUSG00000024601 Isoc1 ENSMUST00000025503 ENSMUSP00000025503 TRANSLATION protein_coding - CCDS29265.1 1 297.0 1.0 4.0 6.5 0.0 0.0 -3,-6 1.0 9 8.0 PRINCIPAL:1 ENSMUSG00000024601 Isoc1 ENSMUST00000238139 ENSMUSP00000157494 TRANSLATION protein_coding - - - 257.0 0.0 3.0 0.0 0.0 0.0 -3,-5 0.0082 8 4.002 MINOR ENSMUSG00000024608 Rps14 ENSMUST00000025511 ENSMUSP00000025511 TRANSLATION protein_coding - CCDS29274.1 1 151.0 0.0 4.41 29.7 0.0 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000024608 Rps14 ENSMUST00000137400 ENSMUSP00000122985 TRANSLATION protein_coding stop - 5 138.0 0.0 3.91 0.0 0.0 0.0 -4,-5 0.0037 4 -2.0 MINOR ENSMUSG00000024608 Rps14 ENSMUST00000236441 - NO_TRANSLATION retained_intron ENSMUSG00000024608 Rps14 ENSMUST00000142980 - NO_TRANSLATION retained_intron ENSMUSG00000024608 Rps14 ENSMUST00000127568 ENSMUSP00000114478 TRANSLATION protein_coding stop - 3 119.0 0.0 3.25 0.0 0.0 0.0 -4,-5 0.0017 4 -2.0 MINOR ENSMUSG00000024608 Rps14 ENSMUST00000235966 ENSMUSP00000158138 TRANSLATION protein_coding - CCDS29274.1 - 151.0 0.0 4.41 29.7 0.0 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000024608 Rps14 ENSMUST00000118551 ENSMUSP00000113081 TRANSLATION protein_coding - CCDS29274.1 2 151.0 0.0 4.41 29.7 0.0 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000024608 Rps14 ENSMUST00000236652 ENSMUSP00000158215 TRANSLATION protein_coding stop - - 80.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000024608 Rps14 ENSMUST00000235603 ENSMUSP00000157948 TRANSLATION protein_coding - CCDS29274.1 - 151.0 0.0 4.41 29.7 0.0 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000024608 Rps14 ENSMUST00000122279 ENSMUSP00000113504 TRANSLATION protein_coding - CCDS29274.1 1 151.0 0.0 4.41 29.7 0.0 0.0 -4,-5 1.0 7 10.0 PRINCIPAL:1 ENSMUSG00000034028 Cd226 ENSMUST00000237979 ENSMUSP00000157554 TRANSLATION nonsense_mediated_decay - - - 187.0 1.0 2.96 0.0 41.1 0.0 4,-1 0.001 - -2.0 MINOR ENSMUSG00000034028 Cd226 ENSMUST00000237110 ENSMUSP00000158575 TRANSLATION protein_coding stop - - 24.0 1.0 0.63 0.0 0.0 0.0 3,-3 0.0009 - -2.0 MINOR ENSMUSG00000034028 Cd226 ENSMUST00000236450 - NO_TRANSLATION retained_intron ENSMUSG00000034028 Cd226 ENSMUST00000235651 ENSMUSP00000158334 TRANSLATION nonsense_mediated_decay - - - 154.0 1.0 1.585 0.0 41.1 0.0 4,-1 0.0014 - -2.0 MINOR ENSMUSG00000034028 Cd226 ENSMUST00000236644 ENSMUSP00000158110 TRANSLATION protein_coding stop - - 38.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000034028 Cd226 ENSMUST00000037142 ENSMUSP00000043551 TRANSLATION protein_coding - CCDS29392.1 1 333.0 1.0 5.41 5.7 75.1 3.0 4,-1 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000034028 Cd226 ENSMUST00000236452 ENSMUSP00000158239 TRANSLATION protein_coding - - - 129.0 0.0 1.45 0.0 0.0 3.0 -4,-7 0.0017 1 0.0 MINOR ENSMUSG00000034028 Cd226 ENSMUST00000236828 ENSMUSP00000158324 TRANSLATION protein_coding - CCDS29392.1 - 333.0 1.0 5.41 5.7 75.1 3.0 4,-1 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000034028 Cd226 ENSMUST00000236835 ENSMUSP00000158454 TRANSLATION protein_coding stop - - 119.0 1.0 1.63 0.0 39.4 0.0 4,-1 0.0014 - -2.0 MINOR ENSMUSG00000034028 Cd226 ENSMUST00000097496 ENSMUSP00000095104 TRANSLATION protein_coding - CCDS29391.1 1 220.0 1.0 3.75 0.0 36.8 3.0 -4,-6 0.0176 2 5.622 MINOR ENSMUSG00000024258 Polr2d ENSMUST00000234146 ENSMUSP00000157052 TRANSLATION protein_coding - - - 110.0 0.0 2.35 0.0 24.8 0.0 -4,-5 0.0 1 5.682 MINOR ENSMUSG00000024258 Polr2d ENSMUST00000025106 ENSMUSP00000025106 TRANSLATION protein_coding - CCDS29111.1 1 142.0 0.0 3.35 0.0 88.7 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000024233 Lyzl1 ENSMUST00000120837 ENSMUSP00000113101 TRANSLATION protein_coding - - 3 99.0 5.0 2.5 0.1 107.0 0.0 -4,-5 0.0 1 9.714 MINOR ENSMUSG00000024233 Lyzl1 ENSMUST00000025076 ENSMUSP00000025076 TRANSLATION protein_coding - CCDS29035.1 1 148.0 11.0 3.5 0.0 145.1 0.0 2,-3 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000090264 Eif4ebp3 ENSMUST00000036765 ENSMUSP00000039298 TRANSLATION protein_coding - CCDS29155.1 1 101.0 0.0 1.8 7.7 125.6 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000073555 Iigp1c ENSMUST00000031549 ENSMUSP00000031549 TRANSLATION protein_coding - CCDS29268.1 1 406.0 15.0 1.0 0.0 515.3 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000024580 Grpel2 ENSMUST00000062991 ENSMUSP00000053440 TRANSLATION protein_coding - CCDS29288.1 1 224.0 0.0 1.85 14.5 128.1 0.0 -4,0 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000024580 Grpel2 ENSMUST00000238010 ENSMUSP00000158353 TRANSLATION protein_coding - - - 111.0 0.0 0.85 0.0 26.2 0.0 -4,0 0.0 1 2.754 MINOR ENSMUSG00000024580 Grpel2 ENSMUST00000237466 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069372 Ctxn3 ENSMUST00000209786 ENSMUSP00000147982 TRANSLATION protein_coding - CCDS50294.1 5 80.0 0.0 1.0 10.3 135.9 1.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069372 Ctxn3 ENSMUST00000091892 ENSMUSP00000089507 TRANSLATION protein_coding - CCDS50294.1 1 80.0 0.0 1.0 10.3 135.9 1.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000069372 Ctxn3 ENSMUST00000209782 ENSMUSP00000147740 TRANSLATION protein_coding stop - 3 32.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024352 Spata24 ENSMUST00000235760 ENSMUSP00000158003 TRANSLATION nonsense_mediated_decay start - - 111.0 0.0 2.05 0.0 108.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024352 Spata24 ENSMUST00000025209 ENSMUSP00000025209 TRANSLATION protein_coding - CCDS29146.1 1 205.0 0.0 5.3 10.3 268.2 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024352 Spata24 ENSMUST00000236574 ENSMUSP00000157388 TRANSLATION protein_coding start - - 180.0 0.0 3.3 0.1 161.7 0.0 -4,-5 0.0029 - -2.0 MINOR ENSMUSG00000024352 Spata24 ENSMUST00000235803 ENSMUSP00000157985 TRANSLATION nonsense_mediated_decay - - - 55.0 0.0 0.8 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024352 Spata24 ENSMUST00000236539 ENSMUSP00000157452 TRANSLATION protein_coding start - - 153.0 0.0 4.5 0.0 197.1 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000024352 Spata24 ENSMUST00000236971 ENSMUSP00000157683 TRANSLATION protein_coding start - - 164.0 0.0 2.8 0.0 104.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024352 Spata24 ENSMUST00000096573 ENSMUSP00000094324 TRANSLATION protein_coding - CCDS29147.1 1 185.0 0.0 3.3 0.1 174.1 0.0 -4,-6 0.0098 - 2.352 MINOR ENSMUSG00000014504 Srp19 ENSMUST00000119329 ENSMUSP00000112826 TRANSLATION protein_coding - - 2 120.0 0.0 3.25 0.0 61.3 0.0 -4,-6 0.0 8 7.902 MINOR ENSMUSG00000014504 Srp19 ENSMUST00000072576 ENSMUSP00000072386 TRANSLATION protein_coding - CCDS37757.1 1 144.0 0.0 4.0 0.1 104.6 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000014504 Srp19 ENSMUST00000142010 ENSMUSP00000116373 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 1.25 0.0 28.6 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000014504 Srp19 ENSMUST00000126518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014504 Srp19 ENSMUST00000131713 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014504 Srp19 ENSMUST00000140279 - NO_TRANSLATION retained_intron ENSMUSG00000024273 2700062C07Rik ENSMUST00000234303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024273 2700062C07Rik ENSMUST00000234559 - NO_TRANSLATION retained_intron ENSMUSG00000024273 2700062C07Rik ENSMUST00000235029 ENSMUSP00000157335 TRANSLATION nonsense_mediated_decay - - - 85.0 0.0 1.08 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000024273 2700062C07Rik ENSMUST00000097646 ENSMUSP00000095251 TRANSLATION protein_coding - CCDS29101.1 1 217.0 0.0 3.88 7.2 263.3 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000024273 2700062C07Rik ENSMUST00000234955 - NO_TRANSLATION retained_intron ENSMUSG00000071847 Apcdd1 ENSMUST00000096554 ENSMUSP00000094302 TRANSLATION protein_coding - CCDS37843.1 1 514.0 0.0 4.3 7.9 436.4 0.0 1,-3 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000071847 Apcdd1 ENSMUST00000237428 ENSMUSP00000157618 TRANSLATION nonsense_mediated_decay - - - 35.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.002 - -2.0 MINOR ENSMUSG00000071847 Apcdd1 ENSMUST00000236135 ENSMUSP00000157539 TRANSLATION protein_coding - CCDS37843.1 - 514.0 0.0 4.3 7.9 436.4 0.0 1,-3 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000071847 Apcdd1 ENSMUST00000236605 - NO_TRANSLATION retained_intron ENSMUSG00000046610 Oacyl ENSMUST00000235962 ENSMUSP00000157461 TRANSLATION protein_coding stop - - 195.0 0.0 0.12 0.0 0.0 0.0 1,-2 0.0031 - -2.0 MINOR ENSMUSG00000046610 Oacyl ENSMUST00000117694 ENSMUSP00000113626 TRANSLATION protein_coding - - 1 612.0 0.0 4.132 0.0 76.8 13.0 1,-2 0.8833 - 6.0 ALTERNATIVE:2 ENSMUSG00000046610 Oacyl ENSMUST00000134343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046610 Oacyl ENSMUST00000115097 ENSMUSP00000110749 TRANSLATION protein_coding - CCDS29308.1 1 685.0 0.0 3.502 2.1 76.8 13.0 1,-2 0.9619 - 5.74 PRINCIPAL:4 ENSMUSG00000024497 Pou4f3 ENSMUST00000025374 ENSMUSP00000025374 TRANSLATION protein_coding - CCDS29212.1 1 338.0 0.0 0.4 20.8 168.2 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024497 Pou4f3 ENSMUST00000237247 ENSMUSP00000158000 TRANSLATION protein_coding - - - 256.0 0.0 0.4 1.2 168.2 0.0 -4,-7 0.1983 - 12.04 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000237089 ENSMUSP00000157732 TRANSLATION protein_coding stop - - 87.0 0.0 0.364 0.0 37.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000237667 ENSMUSP00000158572 TRANSLATION nonsense_mediated_decay - - - 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000236982 ENSMUSP00000157587 TRANSLATION protein_coding stop - - 94.0 0.0 0.864 0.0 43.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000236319 ENSMUSP00000157812 TRANSLATION protein_coding stop - - 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000237903 ENSMUSP00000158563 TRANSLATION protein_coding stop - - 65.0 0.0 0.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000072376 ENSMUSP00000072212 TRANSLATION protein_coding - CCDS29200.1 1 485.0 22.0 3.933 0.0 163.2 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000060450 Rnf14 ENSMUST00000236690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060450 Rnf14 ENSMUST00000238031 - NO_TRANSLATION retained_intron ENSMUSG00000060450 Rnf14 ENSMUST00000236353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060450 Rnf14 ENSMUST00000236032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060450 Rnf14 ENSMUST00000236649 ENSMUSP00000157501 TRANSLATION nonsense_mediated_decay - - - 79.0 0.0 0.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000237211 ENSMUSP00000157387 TRANSLATION protein_coding stop - - 183.0 0.0 1.569 0.0 87.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000237416 ENSMUSP00000157933 TRANSLATION protein_coding - - - 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000171461 ENSMUSP00000126205 TRANSLATION protein_coding - CCDS29200.1 1 485.0 22.0 3.933 0.0 163.2 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000060450 Rnf14 ENSMUST00000236116 ENSMUSP00000157833 TRANSLATION protein_coding - CCDS29200.1 - 485.0 22.0 3.933 0.0 163.2 0.0 -4,-5 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000060450 Rnf14 ENSMUST00000170811 ENSMUSP00000133070 TRANSLATION protein_coding - CCDS50261.1 1 359.0 22.0 3.364 0.0 76.1 0.0 -4,-5 0.0079 7 11.634 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000237824 ENSMUSP00000158137 TRANSLATION protein_coding stop - - 49.0 0.0 0.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000235811 ENSMUSP00000158209 TRANSLATION protein_coding stop - - 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000235812 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060450 Rnf14 ENSMUST00000235491 ENSMUSP00000158444 TRANSLATION protein_coding stop - - 102.0 0.0 1.194 0.0 49.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060450 Rnf14 ENSMUST00000235549 ENSMUSP00000158487 TRANSLATION protein_coding stop - - 142.0 2.0 0.775 0.0 23.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024286 Ccny ENSMUST00000234102 ENSMUSP00000157340 TRANSLATION protein_coding - - - 316.0 0.0 3.896 2.1 54.7 0.0 -4,-2 0.2717 10 12.14 MINOR ENSMUSG00000024286 Ccny ENSMUST00000234382 - NO_TRANSLATION retained_intron ENSMUSG00000024286 Ccny ENSMUST00000053917 ENSMUSP00000050001 TRANSLATION protein_coding - CCDS29050.1 1 341.0 0.0 3.896 32.0 54.7 0.0 -4,-2 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000024286 Ccny ENSMUST00000234779 ENSMUSP00000157353 TRANSLATION nonsense_mediated_decay start - - 26.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024286 Ccny ENSMUST00000234844 ENSMUSP00000157086 TRANSLATION nonsense_mediated_decay - - - 99.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000024501 Dpysl3 ENSMUST00000118071 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024501 Dpysl3 ENSMUST00000121805 ENSMUSP00000112928 TRANSLATION protein_coding - CCDS79639.1 1 683.0 2.0 11.05 16.3 137.3 0.0 -4,-5 0.7332 24 14.978 MINOR ENSMUSG00000024501 Dpysl3 ENSMUST00000025379 ENSMUSP00000025379 TRANSLATION protein_coding - CCDS37801.1 1 570.0 2.0 11.55 31.9 137.3 0.0 -4,-6 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000024501 Dpysl3 ENSMUST00000237707 ENSMUSP00000158446 TRANSLATION nonsense_mediated_decay - - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000024501 Dpysl3 ENSMUST00000118043 ENSMUSP00000113711 TRANSLATION protein_coding - CCDS50269.1 1 568.0 2.0 11.05 3.4 137.3 0.0 -4,-7 0.4088 19 13.31 MINOR ENSMUSG00000024501 Dpysl3 ENSMUST00000124207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045657 Pcdhb10 ENSMUST00000051126 ENSMUSP00000056420 TRANSLATION protein_coding - CCDS29177.1 - 797.0 54.0 1.0 0.0 446.2 0.0 0,-3 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000024381 Bin1 ENSMUST00000091967 ENSMUSP00000089590 TRANSLATION protein_coding - CCDS37755.1 1 477.0 0.0 12.58 6.4 195.1 0.0 -4,-5 1.0 17 9.566 PRINCIPAL:1 ENSMUSG00000024381 Bin1 ENSMUST00000234496 ENSMUSP00000156976 TRANSLATION protein_coding - - - 410.0 0.0 11.43 7.9 195.1 0.0 -4,-5 0.7633 15 7.702 MINOR ENSMUSG00000024381 Bin1 ENSMUST00000234024 ENSMUSP00000156981 TRANSLATION protein_coding stop - - 120.0 0.0 3.75 0.0 77.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024381 Bin1 ENSMUST00000234373 - NO_TRANSLATION retained_intron ENSMUSG00000024381 Bin1 ENSMUST00000025239 ENSMUSP00000025239 TRANSLATION protein_coding - CCDS29119.1 2 588.0 0.0 12.58 6.4 180.2 0.0 -4,-5 0.708 20 7.566 MINOR ENSMUSG00000024381 Bin1 ENSMUST00000234857 ENSMUSP00000157259 TRANSLATION protein_coding - - - 434.0 0.0 11.58 6.4 195.1 0.0 -4,-5 0.6961 15 7.568 MINOR ENSMUSG00000073514 Dok6 ENSMUST00000160328 - NO_TRANSLATION retained_intron ENSMUSG00000073514 Dok6 ENSMUST00000097495 ENSMUSP00000095103 TRANSLATION protein_coding - CCDS37878.1 1 331.0 0.0 3.09 16.4 102.5 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000024360 Etf1 ENSMUST00000025218 ENSMUSP00000025218 TRANSLATION protein_coding - CCDS29137.1 1 437.0 0.0 9.25 20.9 359.8 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000078240 Rpl27rt ENSMUST00000105038 ENSMUSP00000100655 TRANSLATION protein_coding - - - 160.0 0.0 1.0 5.2 94.4 0.0 -4,-5 0.9008 - 14.0 PRINCIPAL:1 ENSMUSG00000024590 Lmnb1 ENSMUST00000128651 - NO_TRANSLATION retained_intron ENSMUSG00000024590 Lmnb1 ENSMUST00000025486 ENSMUSP00000025486 TRANSLATION protein_coding - CCDS29261.1 1 588.0 0.0 8.6 28.1 395.1 0.0 -4,0 1.0 35 16.0 PRINCIPAL:1 ENSMUSG00000024587 Nars ENSMUST00000236463 ENSMUSP00000158367 TRANSLATION nonsense_mediated_decay - - - 43.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024587 Nars ENSMUST00000237400 ENSMUSP00000157402 TRANSLATION protein_coding - CCDS50308.1 - 559.0 10.0 13.75 27.9 411.9 0.0 -4,-5 1.0 20 18.0 PRINCIPAL:4 ENSMUSG00000024587 Nars ENSMUST00000236392 ENSMUSP00000158211 TRANSLATION nonsense_mediated_decay - - - 164.0 0.0 4.25 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024587 Nars ENSMUST00000236873 ENSMUSP00000157502 TRANSLATION nonsense_mediated_decay - - - 127.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024587 Nars ENSMUST00000235887 - NO_TRANSLATION retained_intron ENSMUSG00000024587 Nars ENSMUST00000236583 ENSMUSP00000158408 TRANSLATION nonsense_mediated_decay - - - 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024587 Nars ENSMUST00000237351 ENSMUSP00000158278 TRANSLATION protein_coding start - - 497.0 10.0 12.0 0.0 411.9 0.0 -4,-5 0.0183 15 -2.0 MINOR ENSMUSG00000024587 Nars ENSMUST00000237585 - NO_TRANSLATION retained_intron ENSMUSG00000024587 Nars ENSMUST00000237831 - NO_TRANSLATION retained_intron ENSMUSG00000024587 Nars ENSMUST00000025483 ENSMUSP00000025483 TRANSLATION protein_coding - - 1 558.0 10.0 13.75 27.9 411.9 0.0 -4,-5 0.8621 20 18.0 ALTERNATIVE:1 ENSMUSG00000024587 Nars ENSMUST00000237027 - NO_TRANSLATION retained_intron ENSMUSG00000024587 Nars ENSMUST00000235647 ENSMUSP00000157626 TRANSLATION nonsense_mediated_decay - - - 69.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024587 Nars ENSMUST00000237369 ENSMUSP00000157488 TRANSLATION nonsense_mediated_decay - - - 70.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024587 Nars ENSMUST00000235325 ENSMUSP00000157468 TRANSLATION protein_coding stop - - 210.0 0.0 6.25 0.0 45.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024587 Nars ENSMUST00000236186 ENSMUSP00000158356 TRANSLATION protein_coding - - - 517.0 8.0 12.75 0.0 356.6 0.0 -4,-5 0.0063 16 10.67 MINOR ENSMUSG00000024587 Nars ENSMUST00000237503 - NO_TRANSLATION retained_intron ENSMUSG00000037236 Matr3 ENSMUST00000235960 ENSMUSP00000158418 TRANSLATION protein_coding - - - 508.0 0.0 4.33 4.0 28.3 0.0 -4,-5 0.4337 12 13.098 MINOR ENSMUSG00000037236 Matr3 ENSMUST00000237622 - NO_TRANSLATION retained_intron ENSMUSG00000037236 Matr3 ENSMUST00000237061 ENSMUSP00000157641 TRANSLATION protein_coding - - - 508.0 0.0 4.33 4.0 28.3 0.0 -4,-5 0.4337 12 13.098 MINOR ENSMUSG00000037236 Matr3 ENSMUST00000237780 ENSMUSP00000158372 TRANSLATION protein_coding stop - - 33.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000037236 Matr3 ENSMUST00000237002 - NO_TRANSLATION retained_intron ENSMUSG00000037236 Matr3 ENSMUST00000235581 ENSMUSP00000158297 TRANSLATION protein_coding stop - - 385.0 4.0 0.0 0.0 0.0 0.0 -4,-2 0.0022 19 -2.0 MINOR ENSMUSG00000037236 Matr3 ENSMUST00000236327 - NO_TRANSLATION retained_intron ENSMUSG00000037236 Matr3 ENSMUST00000237018 ENSMUSP00000157751 TRANSLATION nonsense_mediated_decay - - - 91.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037236 Matr3 ENSMUST00000236276 ENSMUSP00000158025 TRANSLATION protein_coding stop - - 121.0 4.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 4 -2.0 MINOR ENSMUSG00000037236 Matr3 ENSMUST00000235199 ENSMUSP00000158074 TRANSLATION protein_coding - CCDS29142.1 - 846.0 4.0 4.33 9.2 27.0 0.0 -4,-2 1.0 31 18.724 PRINCIPAL:1 ENSMUSG00000037236 Matr3 ENSMUST00000235769 - NO_TRANSLATION retained_intron ENSMUSG00000037236 Matr3 ENSMUST00000236507 ENSMUSP00000158302 TRANSLATION protein_coding - - - 508.0 0.0 4.33 4.0 28.3 0.0 -4,-5 0.4337 12 13.098 MINOR ENSMUSG00000037236 Matr3 ENSMUST00000166793 ENSMUSP00000125761 TRANSLATION protein_coding - CCDS29142.1 1 846.0 4.0 4.33 9.2 27.0 0.0 -4,-2 1.0 31 18.724 PRINCIPAL:1 ENSMUSG00000037236 Matr3 ENSMUST00000235551 - NO_TRANSLATION retained_intron ENSMUSG00000037236 Matr3 ENSMUST00000237365 ENSMUSP00000158036 TRANSLATION protein_coding - - - 558.0 2.0 4.33 6.5 28.3 0.0 -4,-1 0.625 13 16.013 MINOR ENSMUSG00000037236 Matr3 ENSMUST00000236860 ENSMUSP00000157570 TRANSLATION protein_coding stop - - 155.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 7 -2.0 MINOR ENSMUSG00000037236 Matr3 ENSMUST00000237744 ENSMUSP00000158537 TRANSLATION protein_coding - CCDS29142.1 - 846.0 4.0 4.33 9.2 27.0 0.0 -4,-2 1.0 31 18.724 PRINCIPAL:1 ENSMUSG00000037236 Matr3 ENSMUST00000235851 ENSMUSP00000157504 TRANSLATION protein_coding stop - - 60.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0003 2 -2.0 MINOR ENSMUSG00000069378 Prdm6 ENSMUST00000154557 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069378 Prdm6 ENSMUST00000236096 ENSMUSP00000158104 TRANSLATION protein_coding stop - - 60.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000069378 Prdm6 ENSMUST00000115399 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069378 Prdm6 ENSMUST00000091900 ENSMUSP00000089513 TRANSLATION protein_coding - CCDS29253.1 1 596.0 18.0 4.4 2.3 93.7 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000069378 Prdm6 ENSMUST00000115398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034300 Fam53c ENSMUST00000235929 ENSMUSP00000157415 TRANSLATION nonsense_mediated_decay - - - 53.0 0.0 0.0 0.0 30.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034300 Fam53c ENSMUST00000097622 ENSMUSP00000095226 TRANSLATION protein_coding - CCDS29134.1 1 393.0 0.0 0.0 11.8 283.1 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000034300 Fam53c ENSMUST00000049281 ENSMUSP00000037034 TRANSLATION protein_coding - CCDS29134.1 1 393.0 0.0 0.0 11.8 283.1 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000073591 Pcdhb22 ENSMUST00000192409 ENSMUSP00000141521 TRANSLATION protein_coding - CCDS29187.1 - 794.0 57.0 2.0 2.1 470.6 1.0 1,-4 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000073591 Pcdhb22 ENSMUST00000097609 ENSMUSP00000095214 TRANSLATION protein_coding - - 2 537.0 36.0 1.0 0.0 298.8 1.0 -4,-5 0.004 - 3.0 MINOR ENSMUSG00000044043 Pcdhb14 ENSMUST00000052387 ENSMUSP00000054111 TRANSLATION protein_coding - CCDS29180.1 - 796.0 55.0 1.0 7.6 470.5 0.0 1,-2 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000103677 Pcdhga4 ENSMUST00000195163 ENSMUSP00000141272 TRANSLATION protein_coding start/stop - 3 266.0 10.0 1.2 0.0 102.0 1.0 -4,-7 0.0024 - -2.0 MINOR ENSMUSG00000103677 Pcdhga4 ENSMUST00000194418 ENSMUSP00000142140 TRANSLATION protein_coding - CCDS79625.1 1 930.0 50.0 2.0 0.0 549.4 1.0 -1,-4 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000024349 Sting1 ENSMUST00000235173 - NO_TRANSLATION retained_intron ENSMUSG00000024349 Sting1 ENSMUST00000235302 ENSMUSP00000157565 TRANSLATION protein_coding stop - - 125.0 0.0 2.18 0.0 63.8 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024349 Sting1 ENSMUST00000115728 ENSMUSP00000111393 TRANSLATION protein_coding - CCDS50253.1 1 378.0 0.0 8.06 0.0 403.3 1.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000024349 Sting1 ENSMUST00000237853 ENSMUSP00000158306 TRANSLATION nonsense_mediated_decay - - - 204.0 0.0 3.609 0.0 150.4 1.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024349 Sting1 ENSMUST00000235496 - NO_TRANSLATION retained_intron ENSMUSG00000024349 Sting1 ENSMUST00000237405 ENSMUSP00000157516 TRANSLATION protein_coding stop - - 45.0 0.0 0.6 0.0 0.0 1.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000024349 Sting1 ENSMUST00000235218 ENSMUSP00000158511 TRANSLATION protein_coding start/stop - - 111.0 0.0 2.8 0.0 81.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024349 Sting1 ENSMUST00000237919 ENSMUSP00000157408 TRANSLATION protein_coding - CCDS50253.1 - 378.0 0.0 8.06 0.0 403.3 1.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000024349 Sting1 ENSMUST00000236926 - NO_TRANSLATION retained_intron ENSMUSG00000024349 Sting1 ENSMUST00000235495 ENSMUSP00000157789 TRANSLATION protein_coding - - - 337.0 0.0 7.81 0.0 328.1 1.0 -4,-7 0.0269 3 6.99 MINOR ENSMUSG00000033272 Slc35a4 ENSMUST00000170288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033272 Slc35a4 ENSMUST00000185899 ENSMUSP00000140201 TRANSLATION protein_coding - - 1 103.0 0.0 0.0 26.7 35.8 0.0 -4,-5 0.6776 2 5.842 MINOR ENSMUSG00000033272 Slc35a4 ENSMUST00000050476 ENSMUSP00000129718 TRANSLATION protein_coding - CCDS29158.1 1 324.0 0.0 0.25 12.5 105.1 9.0 -2,-3 1.0 - 13.788 PRINCIPAL:1 ENSMUSG00000033272 Slc35a4 ENSMUST00000186538 ENSMUSP00000140615 TRANSLATION protein_coding - CCDS29158.1 1 324.0 0.0 0.25 12.5 105.1 9.0 -2,-3 1.0 - 13.788 PRINCIPAL:1 ENSMUSG00000033272 Slc35a4 ENSMUST00000036158 ENSMUSP00000036081 TRANSLATION protein_coding - CCDS29158.1 1 324.0 0.0 0.25 12.5 105.1 9.0 -2,-3 1.0 - 13.788 PRINCIPAL:1 ENSMUSG00000033272 Slc35a4 ENSMUST00000168343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036880 Acaa2 ENSMUST00000041053 ENSMUSP00000037348 TRANSLATION protein_coding - CCDS29342.1 1 397.0 16.0 9.16 28.3 477.4 0.0 -4,-1 1.0 27 22.0 PRINCIPAL:1 ENSMUSG00000036880 Acaa2 ENSMUST00000237306 ENSMUSP00000157638 TRANSLATION protein_coding start - - 103.0 1.0 1.33 0.0 49.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024500 Ppp2r2b ENSMUST00000236238 ENSMUSP00000157412 TRANSLATION protein_coding stop - - 163.0 0.0 4.0 0.0 0.0 0.0 -4,-5 0.0006 1 -2.0 MINOR ENSMUSG00000024500 Ppp2r2b ENSMUST00000239360 ENSMUSP00000159213 TRANSLATION protein_coding - - - 501.0 0.0 9.0 6.7 0.0 0.0 -4,-2 0.3809 2 6.828 MINOR ENSMUSG00000024500 Ppp2r2b ENSMUST00000136118 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024500 Ppp2r2b ENSMUST00000120632 ENSMUSP00000113411 TRANSLATION protein_coding - - 5 443.0 0.0 9.0 28.6 0.0 0.0 -4,-5 0.9136 2 10.0 ALTERNATIVE:1 ENSMUSG00000024500 Ppp2r2b ENSMUST00000153737 ENSMUSP00000157434 TRANSLATION protein_coding stop - 3 79.0 0.0 2.066 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000024500 Ppp2r2b ENSMUST00000117687 ENSMUSP00000113731 TRANSLATION protein_coding - - 1 443.0 0.0 9.0 28.6 0.0 0.0 -4,-5 0.9136 2 10.0 ALTERNATIVE:1 ENSMUSG00000024500 Ppp2r2b ENSMUST00000025377 ENSMUSP00000025377 TRANSLATION protein_coding - CCDS29216.1 1 446.0 0.0 9.0 21.6 0.0 0.0 -4,-7 1.0 2 8.984 PRINCIPAL:4 ENSMUSG00000024500 Ppp2r2b ENSMUST00000155262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047879 Usp14 ENSMUST00000154088 - NO_TRANSLATION retained_intron ENSMUSG00000047879 Usp14 ENSMUST00000142013 - NO_TRANSLATION retained_intron ENSMUSG00000047879 Usp14 ENSMUST00000145929 - NO_TRANSLATION retained_intron ENSMUSG00000047879 Usp14 ENSMUST00000150321 - NO_TRANSLATION retained_intron ENSMUSG00000047879 Usp14 ENSMUST00000116669 ENSMUSP00000112368 TRANSLATION protein_coding - CCDS37734.1 1 458.0 0.0 10.6225 3.1 172.2 0.0 -4,-5 0.1617 16 10.322 MINOR ENSMUSG00000047879 Usp14 ENSMUST00000092096 ENSMUSP00000089728 TRANSLATION protein_coding - CCDS37735.1 1 493.0 0.0 11.6225 27.1 172.2 0.0 -4,-6 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000047879 Usp14 ENSMUST00000133594 - NO_TRANSLATION retained_intron ENSMUSG00000047879 Usp14 ENSMUST00000128334 - NO_TRANSLATION retained_intron ENSMUSG00000047879 Usp14 ENSMUST00000234243 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047879 Usp14 ENSMUST00000234165 - NO_TRANSLATION retained_intron ENSMUSG00000024594 Prrc1 ENSMUST00000025490 ENSMUSP00000025490 TRANSLATION protein_coding - CCDS37825.1 1 443.0 0.0 4.0 6.5 0.0 0.0 -4,-5 1.0 9 8.0 PRINCIPAL:1 ENSMUSG00000024594 Prrc1 ENSMUST00000238069 ENSMUSP00000158347 TRANSLATION protein_coding stop - - 205.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0188 - -2.0 MINOR ENSMUSG00000024594 Prrc1 ENSMUST00000237031 - NO_TRANSLATION retained_intron ENSMUSG00000024594 Prrc1 ENSMUST00000236755 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024594 Prrc1 ENSMUST00000236709 - NO_TRANSLATION retained_intron ENSMUSG00000024594 Prrc1 ENSMUST00000238057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024527 Afg3l2 ENSMUST00000025408 ENSMUSP00000025408 TRANSLATION protein_coding - CCDS37847.1 1 802.0 14.0 12.35 0.1 434.9 0.0 -4,0 1.0 30 18.0 PRINCIPAL:1 ENSMUSG00000024527 Afg3l2 ENSMUST00000236810 - NO_TRANSLATION retained_intron ENSMUSG00000024527 Afg3l2 ENSMUST00000237178 - NO_TRANSLATION retained_intron ENSMUSG00000024527 Afg3l2 ENSMUST00000235409 - NO_TRANSLATION retained_intron ENSMUSG00000051732 Pabpc2 ENSMUST00000063219 ENSMUSP00000066639 TRANSLATION protein_coding - CCDS29206.1 - 628.0 0.0 1.0 18.2 358.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000118407 Gm50457 ENSMUST00000238707 ENSMUSP00000158848 TRANSLATION protein_coding - - - 323.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.6214 - 1.0 PRINCIPAL:1 ENSMUSG00000024294 Mib1 ENSMUST00000234047 - NO_TRANSLATION retained_intron ENSMUSG00000024294 Mib1 ENSMUST00000150000 ENSMUSP00000122879 TRANSLATION protein_coding start - 1 265.0 24.0 2.0 0.0 123.0 0.0 -2,-3 0.0011 10 -2.0 MINOR ENSMUSG00000024294 Mib1 ENSMUST00000052838 ENSMUSP00000054428 TRANSLATION protein_coding - CCDS29058.1 1 1006.0 24.0 13.1 24.2 465.1 0.0 -4,-7 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000024294 Mib1 ENSMUST00000131073 - NO_TRANSLATION retained_intron ENSMUSG00000024294 Mib1 ENSMUST00000124288 ENSMUSP00000114289 TRANSLATION protein_coding start - 1 641.0 24.0 7.6 0.0 253.5 0.0 -4,-5 0.0009 17 -2.0 MINOR ENSMUSG00000045215 Asxl3 ENSMUST00000239326 ENSMUSP00000159205 TRANSLATION protein_coding - - - 2260.0 0.0 2.4 0.0 193.1 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:4 ENSMUSG00000045215 Asxl3 ENSMUST00000153836 - NO_TRANSLATION retained_intron ENSMUSG00000045215 Asxl3 ENSMUST00000120223 ENSMUSP00000112793 TRANSLATION protein_coding - CCDS50234.1 5 2204.0 0.0 2.4 0.0 193.1 0.0 -4,-5 0.9267 - 8.0 ALTERNATIVE:2 ENSMUSG00000024524 Gnal ENSMUST00000237985 ENSMUSP00000158520 TRANSLATION protein_coding - - - 230.0 9.0 3.25 0.0 96.4 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000024524 Gnal ENSMUST00000236551 ENSMUSP00000157813 TRANSLATION protein_coding - - - 230.0 9.0 3.25 0.0 96.4 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000024524 Gnal ENSMUST00000236918 ENSMUSP00000157561 TRANSLATION protein_coding - - - 134.0 7.0 3.45 0.0 70.8 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000024524 Gnal ENSMUST00000237445 ENSMUSP00000157957 TRANSLATION protein_coding - - - 143.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000024524 Gnal ENSMUST00000076605 ENSMUSP00000075908 TRANSLATION protein_coding - CCDS29318.1 1 381.0 23.0 10.2 35.5 356.6 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000024524 Gnal ENSMUST00000025402 ENSMUSP00000025402 TRANSLATION protein_coding - CCDS29317.1 1 448.0 23.0 9.0 1.1 355.6 0.0 -4,-5 0.06 6 15.552 MINOR ENSMUSG00000024524 Gnal ENSMUST00000236771 ENSMUSP00000158245 TRANSLATION protein_coding - CCDS29318.1 - 381.0 23.0 10.2 35.5 356.6 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000024524 Gnal ENSMUST00000237304 ENSMUSP00000158139 TRANSLATION protein_coding stop - - 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024276 Zfp397 ENSMUST00000225682 ENSMUSP00000152930 TRANSLATION protein_coding stop - - 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024276 Zfp397 ENSMUST00000224107 - NO_TRANSLATION retained_intron ENSMUSG00000024276 Zfp397 ENSMUST00000223595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024276 Zfp397 ENSMUST00000060762 ENSMUSP00000057253 TRANSLATION protein_coding - CCDS29096.1 1 527.0 36.0 0.8 2.6 371.3 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000045876 Pcdhb8 ENSMUST00000192867 ENSMUSP00000141814 TRANSLATION protein_coding stop - 3 104.0 11.0 1.3 0.0 58.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045876 Pcdhb8 ENSMUST00000051163 ENSMUSP00000054371 TRANSLATION protein_coding - CCDS29175.1 - 779.0 56.0 3.3 0.4 453.1 0.0 0,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000024583 Txnl1 ENSMUST00000235749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024583 Txnl1 ENSMUST00000238061 ENSMUSP00000157498 TRANSLATION protein_coding - - - 259.0 0.0 5.75 0.0 192.4 0.0 -4,-6 0.0008 11 9.48 MINOR ENSMUSG00000024583 Txnl1 ENSMUST00000235537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024583 Txnl1 ENSMUST00000237004 ENSMUSP00000158375 TRANSLATION protein_coding - CCDS29297.1 - 289.0 0.0 6.75 32.9 201.1 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000024583 Txnl1 ENSMUST00000236892 ENSMUSP00000158344 TRANSLATION protein_coding start - - 91.0 0.0 1.75 0.0 72.1 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000024583 Txnl1 ENSMUST00000025476 ENSMUSP00000025476 TRANSLATION protein_coding - - 1 292.0 0.0 6.75 8.5 201.1 0.0 -4,-5 0.4366 11 12.94 MINOR ENSMUSG00000024583 Txnl1 ENSMUST00000236253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024583 Txnl1 ENSMUST00000237331 ENSMUSP00000158527 TRANSLATION protein_coding - - - 243.0 0.0 5.25 3.0 170.1 0.0 -4,-5 0.0415 10 7.392 MINOR ENSMUSG00000033107 Rnf125 ENSMUST00000050004 ENSMUSP00000058251 TRANSLATION protein_coding - CCDS29088.1 1 140.0 13.0 2.8 1.0 40.9 0.0 -4,-5 0.0088 - 6.018 MINOR ENSMUSG00000033107 Rnf125 ENSMUST00000234316 ENSMUSP00000157304 TRANSLATION protein_coding - - - 233.0 21.0 4.6 13.4 83.2 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000024430 Cabyr ENSMUST00000150758 ENSMUSP00000118330 TRANSLATION nonsense_mediated_decay - CCDS37739.1 1 453.0 0.0 1.5 0.0 37.5 0.0 -4,-7 0.2269 - -2.0 MINOR ENSMUSG00000024430 Cabyr ENSMUST00000080415 ENSMUSP00000079277 TRANSLATION nonsense_mediated_decay - CCDS37739.1 1 453.0 0.0 1.5 0.0 37.5 0.0 -4,-7 0.2269 - -2.0 MINOR ENSMUSG00000024430 Cabyr ENSMUST00000186263 ENSMUSP00000140870 TRANSLATION protein_coding - CCDS37739.1 1 453.0 0.0 1.5 0.0 37.5 0.0 -4,-7 0.2269 5 12.0 MINOR ENSMUSG00000024430 Cabyr ENSMUST00000235000 ENSMUSP00000157080 TRANSLATION protein_coding - - - 187.0 0.0 1.5 0.1 37.5 0.0 -4,-7 0.1032 3 12.0 MINOR ENSMUSG00000024430 Cabyr ENSMUST00000234735 ENSMUSP00000157280 TRANSLATION protein_coding - CCDS50223.1 - 381.0 0.0 1.5 6.8 37.5 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000024430 Cabyr ENSMUST00000121018 ENSMUSP00000113131 TRANSLATION protein_coding - CCDS50223.1 1 381.0 0.0 1.5 6.8 37.5 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000024430 Cabyr ENSMUST00000115857 ENSMUSP00000111523 TRANSLATION protein_coding - CCDS37739.1 1 453.0 0.0 1.5 0.0 37.5 0.0 -4,-7 0.2269 5 12.0 MINOR ENSMUSG00000024430 Cabyr ENSMUST00000191078 ENSMUSP00000140894 TRANSLATION protein_coding - CCDS37739.1 1 453.0 0.0 1.5 0.0 37.5 0.0 -4,-7 0.2269 5 12.0 MINOR ENSMUSG00000024430 Cabyr ENSMUST00000119108 ENSMUSP00000113760 TRANSLATION protein_coding - CCDS50224.1 1 220.0 0.0 1.5 0.0 37.5 0.0 -4,-7 0.2161 3 12.0 MINOR ENSMUSG00000056153 Socs6 ENSMUST00000123826 ENSMUSP00000114993 TRANSLATION protein_coding - CCDS29389.1 1 533.0 0.0 0.6 9.8 89.0 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000056153 Socs6 ENSMUST00000125362 ENSMUSP00000118764 TRANSLATION protein_coding - CCDS29389.1 1 533.0 0.0 0.6 9.8 89.0 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000056153 Socs6 ENSMUST00000136173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056153 Socs6 ENSMUST00000237549 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056153 Socs6 ENSMUST00000236108 ENSMUSP00000157902 TRANSLATION protein_coding stop - - 65.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000056153 Socs6 ENSMUST00000147313 ENSMUSP00000116148 TRANSLATION protein_coding stop - 3 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0069 - -2.0 MINOR ENSMUSG00000056153 Socs6 ENSMUST00000145120 ENSMUSP00000122237 TRANSLATION protein_coding stop - 2 180.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000056153 Socs6 ENSMUST00000155169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056153 Socs6 ENSMUST00000070116 ENSMUSP00000064929 TRANSLATION protein_coding - CCDS29389.1 1 533.0 0.0 0.6 9.8 89.0 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000071856 Mcc ENSMUST00000089874 ENSMUSP00000087318 TRANSLATION protein_coding - CCDS50277.1 1 1003.0 9.0 0.76 0.3 197.2 0.0 -4,-5 0.9745 10 18.0 PRINCIPAL:1 ENSMUSG00000071856 Mcc ENSMUST00000201270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071856 Mcc ENSMUST00000164666 ENSMUSP00000128032 TRANSLATION protein_coding - CCDS50276.1 1 828.0 0.0 0.0 23.0 160.6 0.0 -4,-5 1.0 9 7.804 MINOR ENSMUSG00000071856 Mcc ENSMUST00000202845 - NO_TRANSLATION retained_intron ENSMUSG00000071856 Mcc ENSMUST00000202090 - NO_TRANSLATION retained_intron ENSMUSG00000036225 Kctd1 ENSMUST00000025992 ENSMUSP00000025992 TRANSLATION protein_coding - CCDS50229.1 1 265.0 0.0 4.75 29.0 64.0 0.0 -4,-2 1.0 1 10.0 MINOR ENSMUSG00000036225 Kctd1 ENSMUST00000234864 ENSMUSP00000157005 TRANSLATION protein_coding stop - - 180.0 0.0 3.0 0.0 64.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000036225 Kctd1 ENSMUST00000233993 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036225 Kctd1 ENSMUST00000234221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036225 Kctd1 ENSMUST00000234685 - NO_TRANSLATION retained_intron ENSMUSG00000036225 Kctd1 ENSMUST00000168989 ENSMUSP00000128070 TRANSLATION protein_coding - CCDS50228.1 1 861.0 0.0 4.75 4.3 165.5 0.0 -4,-6 0.9499 7 12.472 PRINCIPAL:1 ENSMUSG00000024622 Hmgxb3 ENSMUST00000236068 ENSMUSP00000157514 TRANSLATION nonsense_mediated_decay - - - 421.0 4.0 0.6 0.0 45.6 0.0 -4,-5 0.1078 2 -2.0 MINOR ENSMUSG00000024622 Hmgxb3 ENSMUST00000237498 - NO_TRANSLATION retained_intron ENSMUSG00000024622 Hmgxb3 ENSMUST00000237101 ENSMUSP00000157699 TRANSLATION nonsense_mediated_decay start - - 184.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024622 Hmgxb3 ENSMUST00000237443 - NO_TRANSLATION retained_intron ENSMUSG00000024622 Hmgxb3 ENSMUST00000235236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024622 Hmgxb3 ENSMUST00000235663 - NO_TRANSLATION retained_intron ENSMUSG00000024622 Hmgxb3 ENSMUST00000235480 ENSMUSP00000158376 TRANSLATION protein_coding - - - 1286.0 8.0 0.6 1.5 45.6 0.0 -4,-5 0.9228 7 15.0 PRINCIPAL:4 ENSMUSG00000024622 Hmgxb3 ENSMUST00000237535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024622 Hmgxb3 ENSMUST00000091884 ENSMUSP00000089498 TRANSLATION protein_coding - CCDS50301.1 1 1254.0 8.0 0.6 0.3 45.6 0.0 -4,-5 0.8624 7 14.0 ALTERNATIVE:2 ENSMUSG00000025429 Pstpip2 ENSMUST00000238172 ENSMUSP00000158158 TRANSLATION protein_coding - - - 230.0 0.0 6.1 1.2 0.0 0.0 -4,-5 0.0205 6 0.056 MINOR ENSMUSG00000025429 Pstpip2 ENSMUST00000114741 ENSMUSP00000110389 TRANSLATION protein_coding - CCDS37868.1 1 334.0 0.0 9.43 15.7 53.8 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000024502 Jakmip2 ENSMUST00000235168 - NO_TRANSLATION retained_intron ENSMUSG00000024502 Jakmip2 ENSMUST00000238185 ENSMUSP00000158094 TRANSLATION protein_coding start - - 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024502 Jakmip2 ENSMUST00000237069 - NO_TRANSLATION retained_intron ENSMUSG00000024502 Jakmip2 ENSMUST00000237288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024502 Jakmip2 ENSMUST00000237393 - NO_TRANSLATION retained_intron ENSMUSG00000024502 Jakmip2 ENSMUST00000082254 ENSMUSP00000080881 TRANSLATION protein_coding - CCDS50271.1 1 820.0 0.0 0.0 33.1 276.6 0.0 -4,-5 1.0 12 10.0 PRINCIPAL:1 ENSMUSG00000024302 Dtna ENSMUST00000220967 - NO_TRANSLATION retained_intron ENSMUSG00000024302 Dtna ENSMUST00000222515 ENSMUSP00000152751 TRANSLATION protein_coding stop - 2 35.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024302 Dtna ENSMUST00000221880 ENSMUSP00000152565 TRANSLATION protein_coding - - 2 567.0 0.0 5.925 4.2 262.5 0.0 -4,-6 0.4795 19 9.2 MINOR ENSMUSG00000024302 Dtna ENSMUST00000220904 ENSMUSP00000152288 TRANSLATION protein_coding - - 1 746.0 0.0 5.925 5.3 262.5 0.0 -4,-6 0.6154 20 9.611 MINOR ENSMUSG00000024302 Dtna ENSMUST00000047954 ENSMUSP00000037475 TRANSLATION protein_coding - CCDS29094.1 1 371.0 0.0 5.925 9.0 262.5 0.0 -4,-6 0.8484 9 11.0 ALTERNATIVE:1 ENSMUSG00000024302 Dtna ENSMUST00000223441 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024302 Dtna ENSMUST00000222351 - NO_TRANSLATION retained_intron ENSMUSG00000024302 Dtna ENSMUST00000221471 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024302 Dtna ENSMUST00000115832 ENSMUSP00000111498 TRANSLATION protein_coding - CCDS50236.1 1 682.0 0.0 5.925 9.0 262.5 0.0 -4,-6 1.0 16 11.0 PRINCIPAL:3 ENSMUSG00000024302 Dtna ENSMUST00000222726 ENSMUSP00000152725 TRANSLATION protein_coding start - 5 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000051050 Spink14 ENSMUST00000162265 ENSMUSP00000125319 TRANSLATION protein_coding - CCDS37806.1 1 96.0 0.0 1.75 3.2 47.1 0.0 0,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000051050 Spink14 ENSMUST00000237843 - NO_TRANSLATION retained_intron ENSMUSG00000051050 Spink14 ENSMUST00000060328 ENSMUSP00000057781 TRANSLATION protein_coding - CCDS37806.1 5 96.0 0.0 1.75 3.2 47.1 0.0 0,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000038059 Smim3 ENSMUST00000237270 - NO_TRANSLATION retained_intron ENSMUSG00000038059 Smim3 ENSMUST00000042710 ENSMUSP00000039285 TRANSLATION protein_coding - CCDS37831.1 1 60.0 0.0 1.0 13.6 0.0 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000051439 Cd14 ENSMUST00000237042 - NO_TRANSLATION retained_intron ENSMUSG00000051439 Cd14 ENSMUST00000061829 ENSMUSP00000056669 TRANSLATION protein_coding - CCDS29159.1 1 366.0 0.0 1.0 0.0 0.0 0.0 1,-3 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000033632 AW554918 ENSMUST00000162149 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033632 AW554918 ENSMUST00000100131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033632 AW554918 ENSMUST00000161262 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033632 AW554918 ENSMUST00000159605 ENSMUSP00000124241 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000033632 AW554918 ENSMUST00000160530 ENSMUSP00000123930 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033632 AW554918 ENSMUST00000097643 ENSMUSP00000095248 TRANSLATION protein_coding - - 5 612.0 0.0 0.0 1.1 524.3 0.0 -4,-5 0.2354 7 6.052 MINOR ENSMUSG00000033632 AW554918 ENSMUST00000036619 ENSMUSP00000046227 TRANSLATION protein_coding - - 5 579.0 0.0 0.0 4.9 524.3 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000024593 Megf10 ENSMUST00000075770 ENSMUSP00000075174 TRANSLATION protein_coding - CCDS29264.1 1 1147.0 23.0 15.2 0.0 226.2 1.0 3,-2 1.0 24 18.0 PRINCIPAL:1 ENSMUSG00000024593 Megf10 ENSMUST00000139892 ENSMUSP00000116814 TRANSLATION protein_coding stop - 1 1061.0 23.0 15.2 0.0 226.2 1.0 3,-2 0.3593 23 -2.0 MINOR ENSMUSG00000024503 Spink1 ENSMUST00000025381 ENSMUSP00000025381 TRANSLATION protein_coding - CCDS37803.1 1 80.0 0.0 2.165 12.5 65.8 0.0 3,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000025885 Myo5b ENSMUST00000154986 - NO_TRANSLATION retained_intron ENSMUSG00000025885 Myo5b ENSMUST00000120161 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025885 Myo5b ENSMUST00000135878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025885 Myo5b ENSMUST00000074157 ENSMUSP00000073790 TRANSLATION protein_coding - CCDS37858.1 1 1818.0 17.0 25.775 3.9 1133.2 0.0 -4,-5 1.0 42 15.0 PRINCIPAL:3 ENSMUSG00000025885 Myo5b ENSMUST00000125882 ENSMUSP00000123123 TRANSLATION protein_coding stop - 3 183.0 14.0 4.33 0.0 170.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025885 Myo5b ENSMUST00000125751 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025885 Myo5b ENSMUST00000177366 ENSMUSP00000135825 TRANSLATION protein_coding start/stop - 5 128.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025885 Myo5b ENSMUST00000140904 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025885 Myo5b ENSMUST00000121875 ENSMUSP00000112728 TRANSLATION protein_coding - - 5 1844.0 17.0 25.775 3.9 1133.2 0.0 -4,-5 0.7781 41 15.0 ALTERNATIVE:2 ENSMUSG00000025885 Myo5b ENSMUST00000122914 - NO_TRANSLATION retained_intron ENSMUSG00000025885 Myo5b ENSMUST00000146253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000103144 Pcdhga1 ENSMUST00000194888 ENSMUSP00000141367 TRANSLATION protein_coding - - - 810.0 51.0 1.0 5.3 409.2 1.0 3,-2 0.7005 1 14.552 MINOR ENSMUSG00000103144 Pcdhga1 ENSMUST00000194190 ENSMUSP00000142062 TRANSLATION protein_coding - CCDS79622.1 1 931.0 51.0 1.0 0.0 500.0 1.0 3,-2 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000061013 Mkx ENSMUST00000176757 - NO_TRANSLATION retained_intron ENSMUSG00000061013 Mkx ENSMUST00000176608 ENSMUSP00000157351 TRANSLATION protein_coding stop - 3 101.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000061013 Mkx ENSMUST00000079788 ENSMUSP00000078718 TRANSLATION protein_coding - CCDS37728.1 1 354.0 0.0 2.5 22.8 53.0 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000061013 Mkx ENSMUST00000188926 - NO_TRANSLATION retained_intron ENSMUSG00000038773 Kdm3b ENSMUST00000224065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038773 Kdm3b ENSMUST00000223567 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038773 Kdm3b ENSMUST00000225047 - NO_TRANSLATION retained_intron ENSMUSG00000038773 Kdm3b ENSMUST00000043775 ENSMUSP00000037628 TRANSLATION protein_coding - CCDS37761.1 1 1762.0 8.0 8.85 6.7 60.4 0.0 -3,-6 1.0 36 20.0 PRINCIPAL:1 ENSMUSG00000038773 Kdm3b ENSMUST00000225195 ENSMUSP00000153446 TRANSLATION nonsense_mediated_decay - - - 1333.0 5.0 3.6 0.0 0.0 0.0 -3,-6 0.0171 31 -2.0 MINOR ENSMUSG00000038773 Kdm3b ENSMUST00000225260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038773 Kdm3b ENSMUST00000224715 ENSMUSP00000153295 TRANSLATION protein_coding - - - 481.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0015 9 0.0 MINOR ENSMUSG00000051678 Pcdhb6 ENSMUST00000194655 ENSMUSP00000141773 TRANSLATION protein_coding stop - 3 60.0 0.0 0.0 0.0 58.4 1.0 1,-3 0.0019 - -2.0 MINOR ENSMUSG00000051678 Pcdhb6 ENSMUST00000061717 ENSMUSP00000058592 TRANSLATION protein_coding - CCDS29174.1 - 772.0 56.0 1.0 0.1 453.7 1.0 0,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000051486 Pcdhb11 ENSMUST00000053073 ENSMUSP00000056148 TRANSLATION protein_coding - CCDS29178.1 - 797.0 54.0 1.0 8.3 457.3 0.0 1,-3 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000033382 Trappc8 ENSMUST00000223584 - NO_TRANSLATION retained_intron ENSMUSG00000033382 Trappc8 ENSMUST00000097658 ENSMUSP00000095262 TRANSLATION protein_coding - CCDS29087.1 1 822.0 0.0 0.0 0.0 546.4 0.0 -4,-5 0.2031 20 6.0 MINOR ENSMUSG00000033382 Trappc8 ENSMUST00000224530 ENSMUSP00000152931 TRANSLATION protein_coding start/stop - - 112.0 0.0 0.0 0.0 153.6 0.0 -4,-6 0.0004 3 -2.0 MINOR ENSMUSG00000033382 Trappc8 ENSMUST00000225661 ENSMUSP00000153183 TRANSLATION protein_coding - CCDS50233.1 - 1437.0 0.0 0.0 10.3 546.4 0.0 -4,-5 1.0 30 9.0 PRINCIPAL:1 ENSMUSG00000033382 Trappc8 ENSMUST00000225502 - NO_TRANSLATION retained_intron ENSMUSG00000024592 C330018D20Rik ENSMUST00000025488 ENSMUSP00000025488 TRANSLATION protein_coding - CCDS50293.1 1 115.0 9.0 2.1 3.9 0.0 0.0 -4,0 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000024592 C330018D20Rik ENSMUST00000139243 ENSMUSP00000116181 TRANSLATION protein_coding - CCDS50293.1 3 115.0 9.0 2.1 3.9 0.0 0.0 -4,0 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000024592 C330018D20Rik ENSMUST00000152087 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043991 Pura ENSMUST00000051301 ENSMUSP00000059404 TRANSLATION protein_coding - CCDS29151.1 1 321.0 0.0 0.4 0.4 361.6 0.0 -4,-5 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000036855 Gjd4 ENSMUST00000041007 ENSMUSP00000035472 TRANSLATION protein_coding - CCDS29049.1 1 364.0 0.0 0.5 0.4 219.4 0.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000026322 Htr4 ENSMUST00000237114 ENSMUSP00000157982 TRANSLATION protein_coding - - - 377.0 0.0 3.004 0.0 224.6 9.0 -4,-6 0.1015 - 12.0 MINOR ENSMUSG00000026322 Htr4 ENSMUST00000236691 ENSMUSP00000157470 TRANSLATION protein_coding - - - 363.0 0.0 3.004 3.3 224.6 9.0 -4,-6 0.2801 - 12.735 MINOR ENSMUSG00000026322 Htr4 ENSMUST00000027560 ENSMUSP00000027560 TRANSLATION protein_coding - CCDS29291.1 1 388.0 0.0 3.004 6.9 224.6 9.0 -4,-6 1.0 - 13.884 MINOR ENSMUSG00000026322 Htr4 ENSMUST00000238081 ENSMUSP00000157967 TRANSLATION protein_coding - - - 387.0 0.0 3.004 10.4 224.6 9.0 -4,-6 0.9929 - 15.0 PRINCIPAL:1 ENSMUSG00000102222 Pcdhga10 ENSMUST00000193404 ENSMUSP00000141359 TRANSLATION protein_coding - CCDS79632.1 1 930.0 50.0 0.8 0.0 552.8 0.0 -1,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000041915 Ammecr1l ENSMUST00000115808 ENSMUSP00000111475 TRANSLATION protein_coding - CCDS37753.1 1 310.0 0.0 5.5 22.7 169.0 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000041915 Ammecr1l ENSMUST00000234413 ENSMUSP00000156982 TRANSLATION protein_coding - CCDS37753.1 - 310.0 0.0 5.5 22.7 169.0 0.0 -4,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000041915 Ammecr1l ENSMUST00000234500 - NO_TRANSLATION retained_intron ENSMUSG00000041915 Ammecr1l ENSMUST00000234441 - NO_TRANSLATION retained_intron ENSMUSG00000041915 Ammecr1l ENSMUST00000234191 ENSMUSP00000157050 TRANSLATION protein_coding - - - 300.0 0.0 4.5 1.0 160.7 0.0 -4,-6 0.0709 4 9.504 MINOR ENSMUSG00000102836 Gm38666 ENSMUST00000194544 ENSMUSP00000141847 TRANSLATION protein_coding,RT start/stop - 5 104.0 0.0 0.0 0.0 22.7 0.0 -4,-6 0.6889 - -2.0 PRINCIPAL:1 ENSMUSG00000045689 Pcdhb4 ENSMUST00000056712 ENSMUSP00000059770 TRANSLATION protein_coding - CCDS29172.1 - 784.0 56.0 1.0 0.3 443.7 0.0 3,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000057561 Eif1a ENSMUST00000078079 ENSMUSP00000077223 TRANSLATION protein_coding - CCDS29233.1 1 144.0 0.0 1.5 18.8 74.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057561 Eif1a ENSMUST00000236497 ENSMUSP00000158364 TRANSLATION protein_coding - - - 193.0 0.0 0.5 0.0 0.0 0.0 -4,0 0.0004 - 1.998 MINOR ENSMUSG00000057561 Eif1a ENSMUST00000235455 ENSMUSP00000157583 TRANSLATION protein_coding - CCDS29233.1 - 144.0 0.0 1.5 18.8 74.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057561 Eif1a ENSMUST00000235973 ENSMUSP00000158565 TRANSLATION protein_coding - CCDS29233.1 - 144.0 0.0 1.5 18.8 74.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057561 Eif1a ENSMUST00000238168 ENSMUSP00000157513 TRANSLATION protein_coding - CCDS29233.1 - 144.0 0.0 1.5 18.8 74.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000057561 Eif1a ENSMUST00000237478 ENSMUSP00000158417 TRANSLATION protein_coding - - - 254.0 0.0 1.5 0.0 74.0 0.0 -4,0 0.056 - 12.0 MINOR ENSMUSG00000057561 Eif1a ENSMUST00000235849 ENSMUSP00000158046 TRANSLATION protein_coding - - - 83.0 0.0 0.5 0.0 0.0 0.0 -2,-5 0.0 - 1.998 MINOR ENSMUSG00000036585 Fgf1 ENSMUST00000134864 ENSMUSP00000122105 TRANSLATION protein_coding stop - 2 49.0 1.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000036585 Fgf1 ENSMUST00000235922 ENSMUSP00000157856 TRANSLATION protein_coding - - - 104.0 1.0 2.68 0.0 68.3 0.0 -4,-5 0.0 2 6.45 MINOR ENSMUSG00000036585 Fgf1 ENSMUST00000115582 ENSMUSP00000111245 TRANSLATION protein_coding - CCDS29204.1 1 155.0 7.0 3.58 27.9 145.1 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000036585 Fgf1 ENSMUST00000236060 ENSMUSP00000158462 TRANSLATION protein_coding - - - 104.0 1.0 2.68 0.0 68.3 0.0 -4,-5 0.0 2 6.45 MINOR ENSMUSG00000036585 Fgf1 ENSMUST00000131348 ENSMUSP00000123293 TRANSLATION nonsense_mediated_decay - - 1 78.0 1.0 1.33 0.0 23.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036585 Fgf1 ENSMUST00000237356 ENSMUSP00000157389 TRANSLATION protein_coding - - - 104.0 1.0 2.68 0.0 68.3 0.0 -4,-5 0.0 2 6.45 MINOR ENSMUSG00000036585 Fgf1 ENSMUST00000147607 - NO_TRANSLATION retained_intron ENSMUSG00000036585 Fgf1 ENSMUST00000236630 ENSMUSP00000157968 TRANSLATION protein_coding - CCDS29204.1 - 155.0 7.0 3.58 27.9 145.1 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000036585 Fgf1 ENSMUST00000139972 ENSMUSP00000122390 TRANSLATION protein_coding stop - 3 78.0 1.0 2.08 0.0 43.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000036585 Fgf1 ENSMUST00000040647 ENSMUSP00000045710 TRANSLATION protein_coding - CCDS29204.1 1 155.0 7.0 3.58 27.9 145.1 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000036585 Fgf1 ENSMUST00000117566 ENSMUSP00000113292 TRANSLATION protein_coding - - 5 60.0 1.0 1.33 3.1 24.4 0.0 -4,-5 0.0353 2 2.67 MINOR ENSMUSG00000039540 4921524L21Rik ENSMUST00000234337 ENSMUSP00000157133 TRANSLATION protein_coding - - - 385.0 0.0 0.0 0.0 36.5 0.0 -4,-5 0.068 - 2.0 ALTERNATIVE:2 ENSMUSG00000039540 4921524L21Rik ENSMUST00000044829 ENSMUSP00000035514 TRANSLATION protein_coding - CCDS50216.1 1 438.0 0.0 0.0 0.0 36.5 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000039540 4921524L21Rik ENSMUST00000234821 ENSMUSP00000157275 TRANSLATION protein_coding stop - - 123.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000047259 Mc4r ENSMUST00000057942 ENSMUSP00000054776 TRANSLATION protein_coding - CCDS29316.1 - 332.0 0.0 1.0 29.5 105.1 0.0 -4,-2 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024472 Dcp2 ENSMUST00000202306 ENSMUSP00000144010 TRANSLATION protein_coding - - 1 82.0 0.0 1.6 0.0 79.9 0.0 -4,-5 0.0 - 1.17 MINOR ENSMUSG00000024472 Dcp2 ENSMUST00000025350 ENSMUSP00000025350 TRANSLATION protein_coding - CCDS50275.1 1 422.0 8.0 6.1 20.4 160.4 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000044322 Dsc1 ENSMUST00000224557 - NO_TRANSLATION retained_intron ENSMUSG00000044322 Dsc1 ENSMUST00000038710 ENSMUSP00000042303 TRANSLATION protein_coding - CCDS29078.1 1 832.0 45.0 10.43 1.8 329.5 1.0 1,-2 0.6447 23 17.344 MINOR ENSMUSG00000044322 Dsc1 ENSMUST00000226115 ENSMUSP00000153126 TRANSLATION protein_coding stop - - 147.0 0.0 1.3 0.0 67.9 0.0 1,-2 0.0012 4 -2.0 MINOR ENSMUSG00000044322 Dsc1 ENSMUST00000224432 ENSMUSP00000153639 TRANSLATION protein_coding - - - 886.0 45.0 10.43 1.8 357.1 1.0 1,-2 1.0 26 19.0 PRINCIPAL:1 ENSMUSG00000024259 Slc25a46 ENSMUST00000233997 ENSMUSP00000157089 TRANSLATION nonsense_mediated_decay - - - 239.0 0.0 0.0 0.0 22.9 0.0 -4,-5 0.0003 4 -2.0 MINOR ENSMUSG00000024259 Slc25a46 ENSMUST00000060396 ENSMUSP00000053325 TRANSLATION protein_coding - CCDS29110.1 1 418.0 0.0 0.1 12.9 63.0 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000024645 Timm21 ENSMUST00000235745 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024645 Timm21 ENSMUST00000235629 - NO_TRANSLATION retained_intron ENSMUSG00000024645 Timm21 ENSMUST00000236812 - NO_TRANSLATION retained_intron ENSMUSG00000024645 Timm21 ENSMUST00000235548 - NO_TRANSLATION retained_intron ENSMUSG00000024645 Timm21 ENSMUST00000025547 ENSMUSP00000025547 TRANSLATION protein_coding - CCDS29386.1 1 244.0 0.0 4.35 11.1 161.1 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000024645 Timm21 ENSMUST00000237949 - NO_TRANSLATION retained_intron ENSMUSG00000024645 Timm21 ENSMUST00000235640 - NO_TRANSLATION retained_intron ENSMUSG00000024645 Timm21 ENSMUST00000235591 - NO_TRANSLATION retained_intron ENSMUSG00000062526 Mppe1 ENSMUST00000237631 ENSMUSP00000158018 TRANSLATION protein_coding stop - - 86.0 1.0 0.966 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000062526 Mppe1 ENSMUST00000236244 - NO_TRANSLATION retained_intron ENSMUSG00000062526 Mppe1 ENSMUST00000073054 ENSMUSP00000072808 TRANSLATION protein_coding - CCDS29319.1 1 397.0 6.0 2.2375 4.2 48.5 0.0 -4,-1 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000062526 Mppe1 ENSMUST00000237279 - NO_TRANSLATION retained_intron ENSMUSG00000117942 Maskbp3 ENSMUST00000140061 ENSMUSP00000121811 TRANSLATION protein_coding,RT start - 2 637.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.6254 - -2.0 PRINCIPAL:1 ENSMUSG00000033949 Trim36 ENSMUST00000167364 ENSMUSP00000129771 TRANSLATION protein_coding - CCDS50279.1 5 717.0 15.0 2.32 11.1 101.7 0.0 -4,-5 0.9371 18 20.608 MINOR ENSMUSG00000033949 Trim36 ENSMUST00000037011 ENSMUSP00000037978 TRANSLATION protein_coding - CCDS29229.1 1 729.0 15.0 2.32 16.5 101.7 0.0 -4,-5 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000033949 Trim36 ENSMUST00000237526 ENSMUSP00000157724 TRANSLATION nonsense_mediated_decay start - - 219.0 0.0 0.0 0.0 33.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000009535 Rnmt ENSMUST00000139554 - NO_TRANSLATION retained_intron ENSMUSG00000009535 Rnmt ENSMUST00000148937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009535 Rnmt ENSMUST00000139111 ENSMUSP00000123500 TRANSLATION protein_coding stop - 3 240.0 8.0 2.68 0.0 146.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000009535 Rnmt ENSMUST00000009679 ENSMUSP00000009679 TRANSLATION protein_coding - CCDS37852.1 1 465.0 16.0 8.01 0.1 418.0 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000009535 Rnmt ENSMUST00000131075 ENSMUSP00000122741 TRANSLATION protein_coding stop - 5 205.0 4.0 1.6 0.0 97.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000009535 Rnmt ENSMUST00000025427 ENSMUSP00000025427 TRANSLATION protein_coding - CCDS50314.1 1 410.0 16.0 7.01 0.1 330.4 0.0 -4,-5 0.0094 9 10.746 MINOR ENSMUSG00000009535 Rnmt ENSMUST00000151833 - NO_TRANSLATION retained_intron ENSMUSG00000009535 Rnmt ENSMUST00000129849 ENSMUSP00000117459 TRANSLATION protein_coding stop - 2 124.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000045094 Arhgef37 ENSMUST00000171629 ENSMUSP00000130560 TRANSLATION protein_coding - CCDS50302.1 5 676.0 0.0 4.16 9.6 231.7 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000045094 Arhgef37 ENSMUST00000236608 ENSMUSP00000157463 TRANSLATION nonsense_mediated_decay - - - 536.0 0.0 2.7 0.0 149.6 0.0 -4,-2 0.0005 8 -2.0 MINOR ENSMUSG00000045094 Arhgef37 ENSMUST00000237557 ENSMUSP00000157956 TRANSLATION protein_coding stop - - 135.0 0.0 1.56 0.0 72.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000061144 Spink12 ENSMUST00000239465 ENSMUSP00000159380 TRANSLATION protein_coding - CCDS29225.1 - 105.0 0.0 1.84 0.0 58.9 0.0 -1,-5 0.2512 1 8.0 ALTERNATIVE:2 ENSMUSG00000061144 Spink12 ENSMUST00000081271 ENSMUSP00000080025 TRANSLATION protein_coding - - 1 87.0 0.0 1.84 2.2 58.9 0.0 3,-2 1.0 1 9.0 PRINCIPAL:2 ENSMUSG00000034484 Snx2 ENSMUST00000237238 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034484 Snx2 ENSMUST00000037850 ENSMUSP00000039243 TRANSLATION protein_coding - CCDS37821.1 1 519.0 0.0 9.45 23.0 393.2 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000034484 Snx2 ENSMUST00000236911 ENSMUSP00000157395 TRANSLATION nonsense_mediated_decay - - - 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034484 Snx2 ENSMUST00000236111 - NO_TRANSLATION retained_intron ENSMUSG00000034484 Snx2 ENSMUST00000235943 - NO_TRANSLATION retained_intron ENSMUSG00000103800 Pcdha8 ENSMUST00000194038 ENSMUSP00000142159 TRANSLATION protein_coding - CCDS79620.1 1 946.0 49.0 1.0 2.0 528.0 0.0 -1,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000071858 Gm94 ENSMUST00000237926 ENSMUSP00000158092 TRANSLATION protein_coding - - - 92.0 0.0 0.0 2.6 150.4 0.0 4,-1 0.3633 - 3.0 ALTERNATIVE:2 ENSMUSG00000071858 Gm94 ENSMUST00000096570 ENSMUSP00000094321 TRANSLATION protein_coding - CCDS37804.1 1 93.0 0.0 0.0 2.6 157.1 0.0 4,-1 1.0 1 3.0 PRINCIPAL:2 ENSMUSG00000103458 Gm37013 ENSMUST00000115661 ENSMUSP00000111325 TRANSLATION protein_coding,RT - CCDS79616.1 2 919.0 50.0 1.0 0.0 421.0 0.0 0,-2 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000037346 Hrh4 ENSMUST00000234565 ENSMUSP00000157130 TRANSLATION protein_coding - - - 141.0 0.0 1.55 0.0 94.0 5.0 -3,-5 0.0248 - 6.054 MINOR ENSMUSG00000037346 Hrh4 ENSMUST00000234084 ENSMUSP00000157228 TRANSLATION protein_coding - - - 67.0 0.0 0.6 1.3 33.3 2.0 -3,-6 0.0447 - 2.456 MINOR ENSMUSG00000037346 Hrh4 ENSMUST00000041676 ENSMUSP00000041061 TRANSLATION protein_coding - CCDS29069.1 1 391.0 0.0 1.565 4.8 192.1 9.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024423 Impact ENSMUST00000235079 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024423 Impact ENSMUST00000234409 ENSMUSP00000157328 TRANSLATION protein_coding stop - - 104.0 0.0 0.0 0.0 51.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024423 Impact ENSMUST00000234369 ENSMUSP00000157113 TRANSLATION nonsense_mediated_decay - - - 83.0 0.0 0.0 0.0 35.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024423 Impact ENSMUST00000234763 ENSMUSP00000157250 TRANSLATION protein_coding stop - - 129.0 0.0 0.0 0.0 51.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024423 Impact ENSMUST00000234035 ENSMUSP00000157188 TRANSLATION protein_coding stop - - 203.0 0.0 0.8 0.0 76.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024423 Impact ENSMUST00000234793 - NO_TRANSLATION retained_intron ENSMUSG00000024423 Impact ENSMUST00000234488 - NO_TRANSLATION retained_intron ENSMUSG00000024423 Impact ENSMUST00000025290 ENSMUSP00000025290 TRANSLATION protein_coding - CCDS29068.1 1 318.0 0.0 3.175 8.9 179.7 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000024423 Impact ENSMUST00000235053 ENSMUSP00000157223 TRANSLATION protein_coding stop - - 178.0 0.0 0.0 0.0 51.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024530 Prelid3a ENSMUST00000235492 - NO_TRANSLATION retained_intron ENSMUSG00000024530 Prelid3a ENSMUST00000235414 ENSMUSP00000157593 TRANSLATION protein_coding start - - 215.0 0.0 3.95 0.0 151.0 0.0 -4,-6 0.0021 5 -2.0 MINOR ENSMUSG00000024530 Prelid3a ENSMUST00000025411 ENSMUSP00000025411 TRANSLATION protein_coding - CCDS37848.1 1 172.0 0.0 4.58 13.8 167.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000024530 Prelid3a ENSMUST00000237312 - NO_TRANSLATION retained_intron ENSMUSG00000024382 Ercc3 ENSMUST00000129023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024382 Ercc3 ENSMUST00000025241 ENSMUSP00000025241 TRANSLATION protein_coding - CCDS29118.1 1 783.0 11.0 12.5 15.3 549.2 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000024382 Ercc3 ENSMUST00000142213 - NO_TRANSLATION retained_intron ENSMUSG00000053624 Gykl1 ENSMUST00000066193 ENSMUSP00000067598 TRANSLATION protein_coding - CCDS29250.1 - 549.0 11.0 1.0 14.5 503.6 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000050304 Slc25a2 ENSMUST00000239189 - NO_TRANSLATION transcribed_unitary_pseudogene ENSMUSG00000050304 Slc25a2 ENSMUST00000239320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050304 Slc25a2 ENSMUST00000058635 ENSMUSP00000052849 TRANSLATION protein_coding - CCDS50258.1 - 265.0 0.0 1.0 9.7 167.9 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000056812 St8sia3 ENSMUST00000139622 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056812 St8sia3 ENSMUST00000237474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056812 St8sia3 ENSMUST00000129518 - NO_TRANSLATION retained_intron ENSMUSG00000056812 St8sia3 ENSMUST00000025477 ENSMUSP00000025477 TRANSLATION protein_coding - CCDS29301.1 1 380.0 9.0 2.5 19.5 249.2 0.0 -1,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000056812 St8sia3 ENSMUST00000237770 ENSMUSP00000158392 TRANSLATION protein_coding - CCDS29301.1 - 380.0 9.0 2.5 19.5 249.2 0.0 -1,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000056812 St8sia3 ENSMUST00000134064 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056812 St8sia3 ENSMUST00000237956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024485 Slc4a9 ENSMUST00000237595 ENSMUSP00000158130 TRANSLATION protein_coding start - - 821.0 0.0 9.662 0.0 814.1 11.0 -4,-6 0.0534 - -2.0 MINOR ENSMUSG00000024485 Slc4a9 ENSMUST00000235181 ENSMUSP00000157460 TRANSLATION protein_coding - CCDS29154.1 - 880.0 0.0 8.062 0.0 698.2 11.0 -4,-5 0.0861 - 0.498 MINOR ENSMUSG00000024485 Slc4a9 ENSMUST00000237243 - NO_TRANSLATION retained_intron ENSMUSG00000024485 Slc4a9 ENSMUST00000236124 ENSMUSP00000157862 TRANSLATION protein_coding - - - 952.0 0.0 10.812 6.5 872.2 11.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024485 Slc4a9 ENSMUST00000236779 ENSMUSP00000158033 TRANSLATION protein_coding - - - 871.0 0.0 9.062 0.0 758.5 7.0 -4,-5 0.0584 - 2.502 MINOR ENSMUSG00000024485 Slc4a9 ENSMUST00000238191 - NO_TRANSLATION retained_intron ENSMUSG00000024485 Slc4a9 ENSMUST00000235382 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024485 Slc4a9 ENSMUST00000115694 ENSMUSP00000111358 TRANSLATION protein_coding - CCDS70884.1 5 929.0 0.0 10.062 0.0 758.6 10.0 -4,-5 0.2044 - 4.5 MINOR ENSMUSG00000024485 Slc4a9 ENSMUST00000074298 ENSMUSP00000073910 TRANSLATION protein_coding - CCDS29154.1 5 880.0 0.0 8.062 0.0 698.2 11.0 -4,-5 0.0861 - 0.498 MINOR ENSMUSG00000024485 Slc4a9 ENSMUST00000236126 ENSMUSP00000158410 TRANSLATION protein_coding - - - 918.0 0.0 10.812 0.9 792.9 11.0 -4,-5 0.2138 - 7.242 MINOR ENSMUSG00000024485 Slc4a9 ENSMUST00000237174 ENSMUSP00000158071 TRANSLATION protein_coding - CCDS70884.1 - 929.0 0.0 10.062 0.0 758.6 10.0 -4,-5 0.2044 - 4.5 MINOR ENSMUSG00000024485 Slc4a9 ENSMUST00000235848 - NO_TRANSLATION retained_intron ENSMUSG00000038524 Fchsd1 ENSMUST00000163131 ENSMUSP00000133058 TRANSLATION protein_coding stop - 3 137.0 0.0 1.391 0.0 65.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000038524 Fchsd1 ENSMUST00000168816 - NO_TRANSLATION retained_intron ENSMUSG00000038524 Fchsd1 ENSMUST00000171253 - NO_TRANSLATION retained_intron ENSMUSG00000038524 Fchsd1 ENSMUST00000164222 ENSMUSP00000128481 TRANSLATION nonsense_mediated_decay - - 2 57.0 0.0 0.65 0.0 39.1 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000038524 Fchsd1 ENSMUST00000165643 - NO_TRANSLATION retained_intron ENSMUSG00000038524 Fchsd1 ENSMUST00000166973 - NO_TRANSLATION retained_intron ENSMUSG00000038524 Fchsd1 ENSMUST00000166727 - NO_TRANSLATION retained_intron ENSMUSG00000038524 Fchsd1 ENSMUST00000043437 ENSMUSP00000047878 TRANSLATION protein_coding - CCDS37786.1 1 688.0 0.0 4.6435 11.4 135.7 0.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000038524 Fchsd1 ENSMUST00000168136 - NO_TRANSLATION retained_intron ENSMUSG00000038524 Fchsd1 ENSMUST00000166148 ENSMUSP00000129825 TRANSLATION protein_coding stop - 2 108.0 0.0 1.091 0.0 64.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000049173 Myoz3 ENSMUST00000056533 ENSMUSP00000063108 TRANSLATION protein_coding - CCDS29273.1 1 245.0 0.0 1.3 9.2 115.5 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000019143 Hars2 ENSMUST00000155842 - NO_TRANSLATION retained_intron ENSMUSG00000019143 Hars2 ENSMUST00000145876 - NO_TRANSLATION retained_intron ENSMUSG00000019143 Hars2 ENSMUST00000124204 - NO_TRANSLATION retained_intron ENSMUSG00000019143 Hars2 ENSMUST00000019287 ENSMUSP00000019287 TRANSLATION protein_coding - CCDS84376.1 1 424.0 10.0 9.7 0.0 57.3 0.0 -2,2 0.1029 9 10.998 MINOR ENSMUSG00000019143 Hars2 ENSMUST00000131952 - NO_TRANSLATION retained_intron ENSMUSG00000019143 Hars2 ENSMUST00000134122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019143 Hars2 ENSMUST00000152954 ENSMUSP00000117231 TRANSLATION protein_coding - CCDS29165.1 1 505.0 24.0 10.2 10.7 57.3 0.0 -2,2 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000042705 Commd10 ENSMUST00000234952 - NO_TRANSLATION retained_intron ENSMUSG00000042705 Commd10 ENSMUST00000234701 ENSMUSP00000157272 TRANSLATION protein_coding - - - 165.0 0.0 0.9 0.0 63.5 0.0 -4,-6 0.0285 6 12.0 MINOR ENSMUSG00000042705 Commd10 ENSMUST00000234124 ENSMUSP00000157292 TRANSLATION nonsense_mediated_decay - - - 190.0 0.0 0.9 0.0 25.8 0.0 -4,-5 0.0143 5 -2.0 MINOR ENSMUSG00000042705 Commd10 ENSMUST00000234069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042705 Commd10 ENSMUST00000234376 - NO_TRANSLATION retained_intron ENSMUSG00000042705 Commd10 ENSMUST00000049388 ENSMUSP00000041650 TRANSLATION protein_coding - CCDS29238.1 1 202.0 0.0 0.9 13.4 63.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000042705 Commd10 ENSMUST00000234085 ENSMUSP00000157146 TRANSLATION protein_coding - - - 113.0 0.0 0.5 0.0 63.5 0.0 -4,-6 0.0128 6 9.336 MINOR ENSMUSG00000042705 Commd10 ENSMUST00000234280 ENSMUSP00000157358 TRANSLATION protein_coding - - - 150.0 0.0 0.5 0.0 63.0 0.0 -4,-5 0.0115 7 9.288 MINOR ENSMUSG00000042705 Commd10 ENSMUST00000234664 - NO_TRANSLATION retained_intron ENSMUSG00000042705 Commd10 ENSMUST00000234944 ENSMUSP00000156998 TRANSLATION nonsense_mediated_decay - - - 197.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0215 2 -2.0 MINOR ENSMUSG00000042705 Commd10 ENSMUST00000234961 ENSMUSP00000157148 TRANSLATION protein_coding - - - 187.0 0.0 0.9 0.0 26.5 0.0 -4,-5 0.0132 5 8.502 MINOR ENSMUSG00000024566 Atp9b ENSMUST00000225075 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024566 Atp9b ENSMUST00000225205 ENSMUSP00000152986 TRANSLATION nonsense_mediated_decay - - - 380.0 0.0 6.1 0.0 68.1 1.0 -4,-1 0.0016 - -2.0 MINOR ENSMUSG00000024566 Atp9b ENSMUST00000225345 - NO_TRANSLATION retained_intron ENSMUSG00000024566 Atp9b ENSMUST00000225235 ENSMUSP00000152932 TRANSLATION nonsense_mediated_decay - - - 380.0 0.0 6.1 0.0 68.1 1.0 -4,-1 0.0016 3 -2.0 MINOR ENSMUSG00000024566 Atp9b ENSMUST00000225980 ENSMUSP00000153157 TRANSLATION protein_coding - CCDS29370.1 - 1135.0 3.0 23.255 14.5 333.2 9.0 -4,-1 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000024566 Atp9b ENSMUST00000225092 - NO_TRANSLATION retained_intron ENSMUSG00000024566 Atp9b ENSMUST00000223926 ENSMUSP00000153640 TRANSLATION nonsense_mediated_decay start - - 163.0 0.0 4.1 0.0 37.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024566 Atp9b ENSMUST00000237845 - NO_TRANSLATION retained_intron ENSMUSG00000024566 Atp9b ENSMUST00000224283 - NO_TRANSLATION retained_intron ENSMUSG00000024566 Atp9b ENSMUST00000235385 - NO_TRANSLATION retained_intron ENSMUSG00000024566 Atp9b ENSMUST00000225218 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024566 Atp9b ENSMUST00000091790 ENSMUSP00000089394 TRANSLATION protein_coding - - 5 1146.0 3.0 23.255 10.3 336.1 9.0 -4,-1 0.8019 7 13.756 MINOR ENSMUSG00000024566 Atp9b ENSMUST00000224709 ENSMUSP00000153394 TRANSLATION nonsense_mediated_decay start - - 78.0 0.0 1.45 0.0 68.6 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024566 Atp9b ENSMUST00000225692 - NO_TRANSLATION retained_intron ENSMUSG00000024566 Atp9b ENSMUST00000226064 ENSMUSP00000153535 TRANSLATION protein_coding stop - - 235.0 2.0 2.68 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000046982 Tshz1 ENSMUST00000175783 ENSMUSP00000157454 TRANSLATION protein_coding - - 1 820.0 12.0 0.0 0.0 0.0 0.0 -4,-5 0.0626 5 4.002 MINOR ENSMUSG00000046982 Tshz1 ENSMUST00000237918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046982 Tshz1 ENSMUST00000060303 ENSMUSP00000089388 TRANSLATION protein_coding - CCDS37876.1 1 1084.0 15.0 0.0 4.2 0.0 0.0 -4,-7 1.0 5 8.0 PRINCIPAL:1 ENSMUSG00000046982 Tshz1 ENSMUST00000235188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038555 Reep2 ENSMUST00000043484 ENSMUSP00000036065 TRANSLATION protein_coding - CCDS29135.1 1 254.0 0.0 3.766 8.7 96.6 0.0 1,-3 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000023066 Rttn ENSMUST00000235882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023066 Rttn ENSMUST00000236313 ENSMUSP00000157705 TRANSLATION nonsense_mediated_decay start - - 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000023066 Rttn ENSMUST00000237640 ENSMUSP00000157632 TRANSLATION nonsense_mediated_decay start - - 123.0 0.0 0.0 0.0 0.0 0.0 -1,-4 0.0 1 -2.0 MINOR ENSMUSG00000023066 Rttn ENSMUST00000236676 ENSMUSP00000158456 TRANSLATION nonsense_mediated_decay start - - 44.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000023066 Rttn ENSMUST00000023828 ENSMUSP00000023828 TRANSLATION protein_coding - CCDS29390.1 5 2226.0 0.0 0.0 8.0 114.9 0.0 -4,-2 1.0 10 9.0 PRINCIPAL:1 ENSMUSG00000023066 Rttn ENSMUST00000235272 - NO_TRANSLATION retained_intron ENSMUSG00000023066 Rttn ENSMUST00000237196 - NO_TRANSLATION retained_intron ENSMUSG00000023066 Rttn ENSMUST00000236531 - NO_TRANSLATION retained_intron ENSMUSG00000023066 Rttn ENSMUST00000235314 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023066 Rttn ENSMUST00000235728 - NO_TRANSLATION retained_intron ENSMUSG00000057130 Txnl4a ENSMUST00000126360 - NO_TRANSLATION retained_intron ENSMUSG00000057130 Txnl4a ENSMUST00000145963 ENSMUSP00000115320 TRANSLATION protein_coding - CCDS29365.1 1 142.0 0.0 3.33 35.2 232.5 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000057130 Txnl4a ENSMUST00000025464 ENSMUSP00000025464 TRANSLATION protein_coding stop - 2 93.0 0.0 2.33 0.0 155.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000057130 Txnl4a ENSMUST00000130675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063889 Crem ENSMUST00000137568 ENSMUSP00000115336 TRANSLATION protein_coding start - 1 223.0 0.0 3.4 0.0 138.2 0.0 -4,-2 0.0384 3 -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000165086 ENSMUSP00000127353 TRANSLATION protein_coding - CCDS50214.1 5 294.0 0.0 3.4 6.7 138.2 0.0 -4,-2 0.7107 3 9.613 ALTERNATIVE:1 ENSMUSG00000063889 Crem ENSMUST00000144496 ENSMUSP00000120349 TRANSLATION protein_coding - - 5 280.0 0.0 3.4 5.5 142.1 0.0 -4,-5 0.6483 3 9.587 ALTERNATIVE:1 ENSMUSG00000063889 Crem ENSMUST00000154135 ENSMUSP00000122051 TRANSLATION protein_coding - CCDS29031.2 5 245.0 0.0 3.4 5.9 138.2 0.0 -4,-1 0.6588 3 9.328 MINOR ENSMUSG00000063889 Crem ENSMUST00000156929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063889 Crem ENSMUST00000134027 ENSMUSP00000122557 TRANSLATION nonsense_mediated_decay - - 5 56.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000149803 ENSMUSP00000121210 TRANSLATION protein_coding - CCDS50212.1 1 124.0 0.0 1.4 0.0 66.8 0.0 -4,-6 0.0134 2 3.198 MINOR ENSMUSG00000063889 Crem ENSMUST00000049942 ENSMUSP00000061925 TRANSLATION protein_coding - CCDS79585.1 2 119.0 0.0 2.0 0.1 71.4 0.0 -4,-5 0.0045 1 3.598 MINOR ENSMUSG00000063889 Crem ENSMUST00000122958 ENSMUSP00000121118 TRANSLATION protein_coding - CCDS50211.1 1 304.0 0.0 3.4 4.4 142.1 0.0 -4,-1 0.664 3 9.2 MINOR ENSMUSG00000063889 Crem ENSMUST00000140912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063889 Crem ENSMUST00000147138 ENSMUSP00000114280 TRANSLATION protein_coding - - 5 120.0 0.0 2.0 1.0 75.3 0.0 -4,-5 0.0124 1 3.998 MINOR ENSMUSG00000063889 Crem ENSMUST00000136961 ENSMUSP00000115363 TRANSLATION protein_coding - - 5 268.0 0.0 3.4 5.3 142.1 0.0 -4,-5 0.6625 3 9.518 MINOR ENSMUSG00000063889 Crem ENSMUST00000150235 ENSMUSP00000121233 TRANSLATION protein_coding - CCDS50215.1 5 357.0 0.0 3.4 8.4 142.1 0.0 -4,-2 1.0 3 10.613 PRINCIPAL:4 ENSMUSG00000063889 Crem ENSMUST00000151311 ENSMUSP00000118267 TRANSLATION protein_coding - - 5 296.0 0.0 3.4 6.8 142.1 0.0 -4,-1 0.7314 3 10.046 ALTERNATIVE:1 ENSMUSG00000063889 Crem ENSMUST00000025069 ENSMUSP00000025069 TRANSLATION protein_coding - CCDS70864.1 5 345.0 0.0 3.4 7.8 138.2 0.0 -4,-2 0.9263 3 10.0 ALTERNATIVE:1 ENSMUSG00000063889 Crem ENSMUST00000127601 ENSMUSP00000118649 TRANSLATION protein_coding start - 5 331.0 0.0 3.4 7.7 142.1 0.0 -4,-6 0.8255 3 -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000152900 ENSMUSP00000123515 TRANSLATION protein_coding start - 1 298.0 0.0 3.4 0.0 138.2 0.0 -4,-2 0.0436 3 -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000129435 ENSMUSP00000117438 TRANSLATION protein_coding - - 5 243.0 0.0 3.4 1.0 142.1 0.0 -4,-5 0.2084 3 8.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000139537 ENSMUSP00000122123 TRANSLATION protein_coding - - 2 95.0 0.0 2.0 0.0 71.4 0.0 -4,-2 0.0 1 3.598 MINOR ENSMUSG00000063889 Crem ENSMUST00000126578 ENSMUSP00000114780 TRANSLATION protein_coding - - 5 304.0 0.0 3.4 4.4 138.2 0.0 -4,-1 0.4102 3 8.8 MINOR ENSMUSG00000063889 Crem ENSMUST00000142690 ENSMUSP00000122282 TRANSLATION protein_coding - CCDS50213.1 1 173.0 0.0 1.4 0.0 66.8 0.0 -4,-6 0.0134 2 3.198 MINOR ENSMUSG00000063889 Crem ENSMUST00000146265 ENSMUSP00000119638 TRANSLATION protein_coding start - 1 272.0 0.0 3.4 0.0 142.1 0.0 -4,-2 0.0452 3 -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000132334 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063889 Crem ENSMUST00000154715 ENSMUSP00000122179 TRANSLATION protein_coding - - 5 329.0 0.0 3.4 4.4 138.2 0.0 -4,-5 0.411 3 8.8 MINOR ENSMUSG00000063889 Crem ENSMUST00000156234 ENSMUSP00000121388 TRANSLATION protein_coding start - 5 341.0 0.0 3.4 1.2 138.2 0.0 -4,-6 0.1536 3 -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000148305 ENSMUSP00000115938 TRANSLATION nonsense_mediated_decay start - 5 72.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000124747 ENSMUSP00000121352 TRANSLATION protein_coding - CCDS79584.1 2 102.0 0.0 2.0 5.6 71.4 0.0 -4,-6 0.3226 1 5.221 MINOR ENSMUSG00000063889 Crem ENSMUST00000154705 ENSMUSP00000119194 TRANSLATION protein_coding - CCDS50210.2 1 125.0 0.0 2.0 5.5 71.4 0.0 -4,-5 0.3275 1 5.185 MINOR ENSMUSG00000063889 Crem ENSMUST00000130599 ENSMUSP00000115471 TRANSLATION protein_coding start - 5 229.0 0.0 3.4 1.0 142.1 0.0 -4,-6 0.2061 3 -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000130047 - NO_TRANSLATION retained_intron ENSMUSG00000063889 Crem ENSMUST00000154470 ENSMUSP00000118128 TRANSLATION protein_coding - CCDS70863.1 5 282.0 0.0 3.4 9.2 138.2 0.0 -4,-2 0.9038 3 10.495 ALTERNATIVE:1 ENSMUSG00000063889 Crem ENSMUST00000131899 ENSMUSP00000119353 TRANSLATION protein_coding start - 1 284.0 0.0 3.4 0.0 138.2 0.0 -4,-2 0.041 3 -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000082141 ENSMUSP00000080780 TRANSLATION protein_coding - CCDS70862.1 5 308.0 0.0 3.4 5.9 138.2 0.0 -4,-1 0.6969 3 9.328 MINOR ENSMUSG00000063889 Crem ENSMUST00000123672 ENSMUSP00000120557 TRANSLATION protein_coding start - 5 217.0 0.0 3.4 2.1 142.1 0.0 -4,-6 0.2486 3 -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000130455 ENSMUSP00000121541 TRANSLATION protein_coding start - 1 335.0 0.0 3.4 0.0 138.2 0.0 -4,-2 0.0472 3 -2.0 MINOR ENSMUSG00000063889 Crem ENSMUST00000151084 ENSMUSP00000118578 TRANSLATION protein_coding - CCDS50209.2 1 113.0 0.0 2.0 5.5 71.4 0.0 -4,-5 0.3275 1 5.185 MINOR ENSMUSG00000063889 Crem ENSMUST00000149266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063889 Crem ENSMUST00000140332 ENSMUSP00000115423 TRANSLATION protein_coding - - 5 108.0 0.0 2.0 9.5 75.3 0.0 -4,-5 0.5515 1 6.998 MINOR ENSMUSG00000063889 Crem ENSMUST00000152108 ENSMUSP00000122241 TRANSLATION protein_coding - - 5 217.0 0.0 3.4 0.0 142.1 0.0 -4,-5 0.012 3 8.0 MINOR ENSMUSG00000014503 Pkd2l2 ENSMUST00000014647 ENSMUSP00000014647 TRANSLATION protein_coding - CCDS29127.1 1 621.0 0.0 8.1495 2.4 428.1 6.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000014503 Pkd2l2 ENSMUST00000235732 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000014503 Pkd2l2 ENSMUST00000166156 ENSMUSP00000127257 TRANSLATION protein_coding - CCDS29127.1 1 621.0 0.0 8.1495 2.4 428.1 6.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000014503 Pkd2l2 ENSMUST00000236131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033871 Ppargc1b ENSMUST00000063307 ENSMUSP00000069431 TRANSLATION protein_coding - - 1 1030.0 0.0 1.1 0.0 37.4 0.0 -4,-7 0.9716 - 8.0 PRINCIPAL:4 ENSMUSG00000033871 Ppargc1b ENSMUST00000142134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033871 Ppargc1b ENSMUST00000075299 ENSMUSP00000074771 TRANSLATION protein_coding - CCDS29284.1 1 1014.0 0.0 1.1 0.4 37.4 0.0 -4,-5 0.9031 - 8.0 ALTERNATIVE:2 ENSMUSG00000041238 Rbbp8 ENSMUST00000235039 ENSMUSP00000157244 TRANSLATION nonsense_mediated_decay - - - 247.0 0.0 3.0 0.0 110.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041238 Rbbp8 ENSMUST00000234616 ENSMUSP00000157098 TRANSLATION nonsense_mediated_decay start - - 26.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041238 Rbbp8 ENSMUST00000047322 ENSMUSP00000046255 TRANSLATION protein_coding - CCDS37738.1 1 893.0 0.0 4.58 3.0 174.8 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000041238 Rbbp8 ENSMUST00000234499 ENSMUSP00000157079 TRANSLATION protein_coding stop - - 118.0 0.0 3.0 0.0 151.7 0.0 -4,-5 0.0018 - -2.0 MINOR ENSMUSG00000041238 Rbbp8 ENSMUST00000234766 - NO_TRANSLATION retained_intron ENSMUSG00000041238 Rbbp8 ENSMUST00000234184 - NO_TRANSLATION retained_intron ENSMUSG00000041238 Rbbp8 ENSMUST00000234161 - NO_TRANSLATION retained_intron ENSMUSG00000041238 Rbbp8 ENSMUST00000115861 ENSMUSP00000111527 TRANSLATION protein_coding - CCDS37738.1 1 893.0 0.0 4.58 3.0 174.8 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000041238 Rbbp8 ENSMUST00000234744 - NO_TRANSLATION retained_intron ENSMUSG00000041238 Rbbp8 ENSMUST00000234984 ENSMUSP00000157008 TRANSLATION nonsense_mediated_decay - - - 612.0 0.0 3.75 0.0 174.8 0.0 -4,-5 0.0154 1 -2.0 MINOR ENSMUSG00000041238 Rbbp8 ENSMUST00000234074 - NO_TRANSLATION retained_intron ENSMUSG00000073599 Ecscr ENSMUST00000143684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073599 Ecscr ENSMUST00000235163 ENSMUSP00000158197 TRANSLATION nonsense_mediated_decay - - - 190.0 0.0 0.0 0.0 128.2 2.0 1,-2 0.0108 2 -2.0 MINOR ENSMUSG00000073599 Ecscr ENSMUST00000133064 ENSMUSP00000118628 TRANSLATION protein_coding - - 2 235.0 0.0 0.0 0.0 188.5 2.0 -4,-5 0.157 3 2.0 ALTERNATIVE:2 ENSMUSG00000073599 Ecscr ENSMUST00000123973 ENSMUSP00000118479 TRANSLATION protein_coding start - 3 159.0 0.0 0.0 0.0 124.9 2.0 -4,-2 0.0042 2 -2.0 MINOR ENSMUSG00000073599 Ecscr ENSMUST00000097618 ENSMUSP00000095223 TRANSLATION protein_coding - CCDS37763.1 1 230.0 0.0 0.0 0.0 188.5 2.0 -4,-5 1.0 3 2.0 PRINCIPAL:2 ENSMUSG00000073599 Ecscr ENSMUST00000124237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073599 Ecscr ENSMUST00000134656 ENSMUSP00000116109 TRANSLATION protein_coding start - 3 166.0 0.0 0.0 0.0 124.9 2.0 -4,-2 0.0042 2 -2.0 MINOR ENSMUSG00000024621 Csf1r ENSMUST00000025523 ENSMUSP00000025523 TRANSLATION protein_coding - CCDS29280.1 1 977.0 20.0 17.365 1.1 382.8 1.0 2,-1 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000024621 Csf1r ENSMUST00000237873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024621 Csf1r ENSMUST00000237706 ENSMUSP00000157861 TRANSLATION protein_coding stop - - 103.0 0.0 1.0 0.0 0.0 0.0 2,-1 0.0026 - -2.0 MINOR ENSMUSG00000024621 Csf1r ENSMUST00000235447 ENSMUSP00000158568 TRANSLATION protein_coding stop - - 139.0 0.0 2.0 0.0 0.0 0.0 2,-1 0.0026 - -2.0 MINOR ENSMUSG00000024621 Csf1r ENSMUST00000115268 ENSMUSP00000110923 TRANSLATION protein_coding - CCDS29280.1 1 977.0 20.0 17.365 1.1 382.8 1.0 2,-1 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000024621 Csf1r ENSMUST00000237485 - NO_TRANSLATION retained_intron ENSMUSG00000044393 Dsg2 ENSMUST00000120102 ENSMUSP00000113153 TRANSLATION protein_coding - - 1 360.0 23.0 6.4 0.0 109.2 0.0 0,-3 0.0 7 2.922 MINOR ENSMUSG00000044393 Dsg2 ENSMUST00000059787 ENSMUSP00000057096 TRANSLATION protein_coding - CCDS29084.1 1 1122.0 41.0 10.3 0.0 160.5 0.0 0,-3 1.0 30 18.0 PRINCIPAL:1 ENSMUSG00000044393 Dsg2 ENSMUST00000121837 ENSMUSP00000113029 TRANSLATION protein_coding - - 1 292.0 20.0 5.465 0.0 74.7 0.0 0,-3 0.0 7 0.852 MINOR ENSMUSG00000033032 Afap1l1 ENSMUST00000120472 ENSMUSP00000113286 TRANSLATION protein_coding - CCDS50303.1 1 768.0 0.0 1.2 13.5 69.8 0.0 -4,-7 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000033032 Afap1l1 ENSMUST00000154876 ENSMUSP00000121278 TRANSLATION nonsense_mediated_decay - - 1 123.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000033032 Afap1l1 ENSMUST00000147278 - NO_TRANSLATION retained_intron ENSMUSG00000034774 Dsg1c ENSMUST00000054128 ENSMUSP00000054799 TRANSLATION protein_coding - CCDS29079.1 1 911.0 27.0 7.5 0.0 185.9 0.0 3,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000103037 Pcdhgb1 ENSMUST00000195624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000103037 Pcdhgb1 ENSMUST00000192931 ENSMUSP00000141348 TRANSLATION protein_coding - CCDS79624.1 1 918.0 51.0 1.0 0.0 514.3 0.0 1,-1 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000040446 Rprd1a ENSMUST00000234403 - NO_TRANSLATION retained_intron ENSMUSG00000040446 Rprd1a ENSMUST00000046206 ENSMUSP00000043618 TRANSLATION protein_coding - CCDS29102.1 1 312.0 0.0 5.8 0.0 269.9 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000040446 Rprd1a ENSMUST00000234721 - NO_TRANSLATION retained_intron ENSMUSG00000053441 Adamts19 ENSMUST00000237536 - NO_TRANSLATION retained_intron ENSMUSG00000053441 Adamts19 ENSMUST00000237964 - NO_TRANSLATION retained_intron ENSMUSG00000053441 Adamts19 ENSMUST00000052907 ENSMUSP00000050535 TRANSLATION protein_coding - CCDS29266.1 1 1210.0 13.0 6.457 0.4 386.4 0.0 -3,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000053441 Adamts19 ENSMUST00000236901 - NO_TRANSLATION retained_intron ENSMUSG00000091519 Skor2 ENSMUST00000166956 ENSMUSP00000132338 TRANSLATION protein_coding - CCDS50322.1 1 1008.0 4.0 0.4 1.4 241.6 0.0 -4,-6 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000024283 Wac ENSMUST00000092112 ENSMUSP00000089746 TRANSLATION protein_coding - CCDS50218.1 1 543.0 0.0 1.128 8.7 38.8 0.0 -4,-7 0.8072 10 10.388 MINOR ENSMUSG00000024283 Wac ENSMUST00000171042 ENSMUSP00000133185 TRANSLATION protein_coding - - 1 494.0 0.0 1.128 2.8 38.8 0.0 -4,-5 0.2203 9 8.56 MINOR ENSMUSG00000024283 Wac ENSMUST00000168446 ENSMUSP00000131032 TRANSLATION protein_coding stop - 5 222.0 0.0 1.128 0.0 38.8 0.0 -4,-7 0.0375 6 -2.0 MINOR ENSMUSG00000024283 Wac ENSMUST00000171486 ENSMUSP00000127848 TRANSLATION protein_coding - - 5 495.0 0.0 1.128 2.8 38.8 0.0 -4,-5 0.2203 10 8.56 MINOR ENSMUSG00000024283 Wac ENSMUST00000165854 ENSMUSP00000126815 TRANSLATION protein_coding start/stop - 3 295.0 0.0 1.128 0.0 38.8 0.0 -4,-7 0.0451 4 -2.0 MINOR ENSMUSG00000024283 Wac ENSMUST00000074919 ENSMUSP00000074454 TRANSLATION protein_coding - CCDS70869.1 1 601.0 0.0 1.128 13.9 38.8 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000024283 Wac ENSMUST00000169010 ENSMUSP00000131750 TRANSLATION protein_coding stop - 3 113.0 0.0 0.93 0.0 34.0 0.0 -4,-5 0.0135 2 -2.0 MINOR ENSMUSG00000024283 Wac ENSMUST00000172018 ENSMUSP00000128321 TRANSLATION protein_coding - - 5 597.0 0.0 1.128 13.8 38.8 0.0 -4,-5 0.8266 13 11.968 ALTERNATIVE:1 ENSMUSG00000024283 Wac ENSMUST00000170932 ENSMUSP00000127434 TRANSLATION protein_coding stop - 3 2.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0304 - -2.0 MINOR ENSMUSG00000024283 Wac ENSMUST00000167542 ENSMUSP00000125989 TRANSLATION protein_coding start/stop - 2 212.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0008 4 -2.0 MINOR ENSMUSG00000024283 Wac ENSMUST00000165572 - NO_TRANSLATION retained_intron ENSMUSG00000024283 Wac ENSMUST00000166378 ENSMUSP00000128060 TRANSLATION protein_coding stop - 3 27.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024283 Wac ENSMUST00000167057 - NO_TRANSLATION retained_intron ENSMUSG00000024283 Wac ENSMUST00000166062 ENSMUSP00000132532 TRANSLATION protein_coding stop - 1 339.0 0.0 1.128 0.0 38.8 0.0 -4,-5 0.0434 8 -2.0 MINOR ENSMUSG00000024283 Wac ENSMUST00000167020 ENSMUSP00000132117 TRANSLATION protein_coding - CCDS29046.1 1 646.0 0.0 1.128 12.7 38.8 0.0 -4,-7 0.9062 13 11.628 ALTERNATIVE:1 ENSMUSG00000024283 Wac ENSMUST00000170854 ENSMUSP00000131141 TRANSLATION protein_coding start/stop - 5 241.0 0.0 0.528 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000051242 Pcdhb9 ENSMUST00000057228 ENSMUSP00000058801 TRANSLATION protein_coding - CCDS37780.1 - 828.0 54.0 0.8 0.0 443.8 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000059040 Eno1b ENSMUST00000076155 ENSMUSP00000075513 TRANSLATION protein_coding - CCDS50285.1 1 434.0 6.0 1.0 36.9 721.8 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000059040 Eno1b ENSMUST00000235307 ENSMUSP00000157807 TRANSLATION protein_coding - CCDS50285.1 - 434.0 6.0 1.0 36.9 721.8 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000055095 Spink6 ENSMUST00000068473 ENSMUSP00000069247 TRANSLATION protein_coding - CCDS29224.1 1 105.0 0.0 2.355 6.1 58.3 0.0 4,-1 0.908 - 10.124 ALTERNATIVE:1 ENSMUSG00000055095 Spink6 ENSMUST00000236634 ENSMUSP00000157648 TRANSLATION protein_coding - - - 80.0 0.0 2.28 8.2 58.3 0.0 4,-1 1.0 - 10.808 PRINCIPAL:4 ENSMUSG00000055095 Spink6 ENSMUST00000237636 - NO_TRANSLATION retained_intron ENSMUSG00000055095 Spink6 ENSMUST00000235436 ENSMUSP00000158333 TRANSLATION protein_coding - - - 94.0 0.0 1.83 0.0 58.3 0.0 -4,-6 0.004 - 6.662 MINOR ENSMUSG00000024603 Dctn4 ENSMUST00000224778 - NO_TRANSLATION retained_intron ENSMUSG00000024603 Dctn4 ENSMUST00000225005 - NO_TRANSLATION retained_intron ENSMUSG00000024603 Dctn4 ENSMUST00000223590 ENSMUSP00000153421 TRANSLATION protein_coding - - - 48.0 2.0 1.0 0.0 0.0 0.0 -4,-6 0.0021 2 2.0 MINOR ENSMUSG00000024603 Dctn4 ENSMUST00000224317 - NO_TRANSLATION retained_intron ENSMUSG00000024603 Dctn4 ENSMUST00000025505 ENSMUSP00000025505 TRANSLATION protein_coding - CCDS37832.1 1 460.0 4.0 7.83 36.9 0.0 0.0 -4,-6 1.0 14 14.0 PRINCIPAL:3 ENSMUSG00000024603 Dctn4 ENSMUST00000224671 - NO_TRANSLATION retained_intron ENSMUSG00000024603 Dctn4 ENSMUST00000223984 ENSMUSP00000153008 TRANSLATION protein_coding - - - 467.0 4.0 7.5 36.9 0.0 0.0 -4,-6 0.8399 13 13.34 ALTERNATIVE:1 ENSMUSG00000024603 Dctn4 ENSMUST00000223794 - NO_TRANSLATION retained_intron ENSMUSG00000023036 Pcdhgc4 ENSMUST00000066140 ENSMUSP00000068846 TRANSLATION protein_coding - CCDS29193.1 1 941.0 49.0 0.6 5.9 432.4 0.0 3,-1 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000023036 Pcdhgc4 ENSMUST00000193222 - NO_TRANSLATION retained_intron ENSMUSG00000023036 Pcdhgc4 ENSMUST00000195239 ENSMUSP00000141244 TRANSLATION protein_coding - - 3 131.0 0.0 0.0 0.3 97.0 0.0 -4,-7 0.0135 - 0.0 MINOR ENSMUSG00000006740 Kif5b ENSMUST00000166249 - NO_TRANSLATION retained_intron ENSMUSG00000006740 Kif5b ENSMUST00000234166 - NO_TRANSLATION retained_intron ENSMUSG00000006740 Kif5b ENSMUST00000025083 ENSMUSP00000025083 TRANSLATION protein_coding - CCDS37724.1 1 963.0 11.0 14.5 28.2 376.1 0.0 -4,-5 1.0 39 22.0 PRINCIPAL:1 ENSMUSG00000006740 Kif5b ENSMUST00000163210 ENSMUSP00000130750 TRANSLATION protein_coding stop - 5 619.0 11.0 12.5 0.0 376.1 0.0 -4,-5 0.0197 24 -2.0 MINOR ENSMUSG00000006740 Kif5b ENSMUST00000168031 - NO_TRANSLATION retained_intron ENSMUSG00000006740 Kif5b ENSMUST00000170959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006740 Kif5b ENSMUST00000164426 - NO_TRANSLATION retained_intron ENSMUSG00000041891 Lman1 ENSMUST00000144793 - NO_TRANSLATION retained_intron ENSMUSG00000041891 Lman1 ENSMUST00000236070 - NO_TRANSLATION retained_intron ENSMUSG00000041891 Lman1 ENSMUST00000150133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041891 Lman1 ENSMUST00000120461 ENSMUSP00000113326 TRANSLATION protein_coding - CCDS29313.1 1 517.0 13.0 6.05 8.9 309.1 1.0 0,1 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000041891 Lman1 ENSMUST00000155895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041891 Lman1 ENSMUST00000236292 - NO_TRANSLATION retained_intron ENSMUSG00000041891 Lman1 ENSMUST00000048260 ENSMUSP00000040140 TRANSLATION protein_coding - CCDS29313.1 1 517.0 13.0 6.05 8.9 309.1 1.0 0,1 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000041891 Lman1 ENSMUST00000236866 ENSMUSP00000158495 TRANSLATION protein_coding - CCDS29313.1 - 517.0 13.0 6.05 8.9 309.1 1.0 0,1 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000041891 Lman1 ENSMUST00000143990 ENSMUSP00000116433 TRANSLATION protein_coding stop - 5 289.0 13.0 5.25 0.0 276.2 0.0 -4,-5 0.0045 5 -2.0 MINOR ENSMUSG00000024317 Rnf138 ENSMUST00000052396 ENSMUSP00000056641 TRANSLATION protein_coding - CCDS29089.1 5 209.0 16.0 2.55 3.4 54.1 0.0 -4,-5 0.6637 2 13.888 MINOR ENSMUSG00000024317 Rnf138 ENSMUST00000234536 ENSMUSP00000157047 TRANSLATION protein_coding - CCDS29090.1 - 245.0 16.0 3.55 0.0 106.0 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000024317 Rnf138 ENSMUST00000234545 ENSMUSP00000157123 TRANSLATION protein_coding start - - 179.0 16.0 2.45 0.0 54.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024317 Rnf138 ENSMUST00000072847 ENSMUSP00000072626 TRANSLATION protein_coding - CCDS29089.1 1 209.0 16.0 2.55 3.4 54.1 0.0 -4,-5 0.6637 2 13.888 MINOR ENSMUSG00000024317 Rnf138 ENSMUST00000234169 - NO_TRANSLATION retained_intron ENSMUSG00000024317 Rnf138 ENSMUST00000234107 ENSMUSP00000157102 TRANSLATION protein_coding - CCDS29090.1 - 245.0 16.0 3.55 0.0 106.0 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000052102 Gnpda1 ENSMUST00000063814 ENSMUSP00000069081 TRANSLATION protein_coding - CCDS29201.1 1 289.0 15.0 8.08 24.9 67.0 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000052102 Gnpda1 ENSMUST00000237313 - NO_TRANSLATION retained_intron ENSMUSG00000052102 Gnpda1 ENSMUST00000129062 - NO_TRANSLATION retained_intron ENSMUSG00000052102 Gnpda1 ENSMUST00000237487 ENSMUSP00000157847 TRANSLATION protein_coding - - - 169.0 5.0 4.5 0.0 34.6 0.0 -4,-5 0.0 8 3.096 MINOR ENSMUSG00000052102 Gnpda1 ENSMUST00000139885 ENSMUSP00000115359 TRANSLATION protein_coding stop - 3 124.0 5.0 3.0 0.0 31.1 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000052102 Gnpda1 ENSMUST00000153291 ENSMUSP00000157900 TRANSLATION nonsense_mediated_decay start - 3 50.0 1.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000052102 Gnpda1 ENSMUST00000235590 ENSMUSP00000158388 TRANSLATION protein_coding - - - 177.0 5.0 3.698 0.0 34.6 0.0 -4,-5 0.0 7 3.096 MINOR ENSMUSG00000041923 Nol4 ENSMUST00000164893 ENSMUSP00000127870 TRANSLATION protein_coding - CCDS84362.1 5 573.0 3.0 0.0 16.9 0.0 0.0 -4,-5 0.884 4 6.552 ALTERNATIVE:1 ENSMUSG00000041923 Nol4 ENSMUST00000097651 ENSMUSP00000095256 TRANSLATION protein_coding - CCDS29093.2 1 483.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.1148 4 3.0 MINOR ENSMUSG00000041923 Nol4 ENSMUST00000081423 ENSMUSP00000080150 TRANSLATION protein_coding - CCDS50235.1 1 564.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.1261 2 3.0 MINOR ENSMUSG00000041923 Nol4 ENSMUST00000164186 ENSMUSP00000130950 TRANSLATION protein_coding - CCDS84363.1 5 637.0 3.0 0.0 18.9 0.0 0.0 -4,-5 1.0 4 7.0 PRINCIPAL:4 ENSMUSG00000041923 Nol4 ENSMUST00000164521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041923 Nol4 ENSMUST00000069215 ENSMUSP00000064166 TRANSLATION protein_coding start - 1 419.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0269 - -2.0 MINOR ENSMUSG00000041923 Nol4 ENSMUST00000097652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041923 Nol4 ENSMUST00000165323 ENSMUSP00000125860 TRANSLATION protein_coding stop - 5 108.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0122 2 -2.0 MINOR ENSMUSG00000041923 Nol4 ENSMUST00000092015 ENSMUSP00000089642 TRANSLATION protein_coding start - 1 355.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0282 - -2.0 MINOR ENSMUSG00000053644 Aldh7a1 ENSMUST00000174704 ENSMUSP00000133970 TRANSLATION nonsense_mediated_decay start - 5 321.0 25.0 7.5165 0.0 184.3 0.0 -3,1 0.001 9 -2.0 MINOR ENSMUSG00000053644 Aldh7a1 ENSMUST00000174518 ENSMUSP00000133372 TRANSLATION protein_coding - CCDS50291.1 1 511.0 30.0 14.66 6.2 432.6 0.0 -4,-5 0.7931 19 19.734 MINOR ENSMUSG00000053644 Aldh7a1 ENSMUST00000168517 - NO_TRANSLATION retained_intron ENSMUSG00000053644 Aldh7a1 ENSMUST00000171844 ENSMUSP00000127652 TRANSLATION protein_coding start/stop - 3 121.0 0.0 3.0 0.0 39.2 0.0 -3,-1 0.0 5 -2.0 MINOR ENSMUSG00000053644 Aldh7a1 ENSMUST00000171851 - NO_TRANSLATION retained_intron ENSMUSG00000053644 Aldh7a1 ENSMUST00000172902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053644 Aldh7a1 ENSMUST00000172734 ENSMUSP00000134192 TRANSLATION protein_coding - - 5 475.0 30.0 12.91 1.0 352.6 0.0 -1,3 0.0245 14 9.702 MINOR ENSMUSG00000053644 Aldh7a1 ENSMUST00000066208 ENSMUSP00000065089 TRANSLATION protein_coding - CCDS29258.2 1 539.0 30.0 14.66 10.0 432.6 0.0 -1,3 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000053644 Aldh7a1 ENSMUST00000170309 ENSMUSP00000127625 TRANSLATION protein_coding start/stop - 3 161.0 0.0 3.7 0.0 55.0 0.0 -1,3 0.0 7 -2.0 MINOR ENSMUSG00000024597 Slc12a2 ENSMUST00000236673 - NO_TRANSLATION retained_intron ENSMUSG00000024597 Slc12a2 ENSMUST00000115366 ENSMUSP00000111023 TRANSLATION protein_coding - CCDS37826.1 1 1206.0 0.0 21.5 2.1 1142.5 0.0 -4,-5 1.0 31 13.0 PRINCIPAL:1 ENSMUSG00000024613 Tcof1 ENSMUST00000177343 ENSMUSP00000135295 TRANSLATION protein_coding stop - 3 167.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024613 Tcof1 ENSMUST00000176088 - NO_TRANSLATION retained_intron ENSMUSG00000024613 Tcof1 ENSMUST00000177172 ENSMUSP00000134755 TRANSLATION protein_coding stop - 5 1056.0 0.0 1.2 0.0 308.0 0.0 -3,-1 0.0768 17 -2.0 MINOR ENSMUSG00000024613 Tcof1 ENSMUST00000176630 ENSMUSP00000135476 TRANSLATION protein_coding - CCDS37836.1 5 1320.0 0.0 1.2 0.0 604.5 0.0 -3,-1 0.5694 22 6.0 ALTERNATIVE:2 ENSMUSG00000024613 Tcof1 ENSMUST00000175934 ENSMUSP00000135639 TRANSLATION protein_coding - CCDS57125.1 2 1356.0 0.0 1.2 0.0 604.5 0.0 -3,-1 1.0 22 6.0 PRINCIPAL:2 ENSMUSG00000024613 Tcof1 ENSMUST00000163446 ENSMUSP00000130454 TRANSLATION nonsense_mediated_decay - - 5 1013.0 0.0 1.2 0.0 604.5 0.0 -3,-1 0.302 16 -2.0 MINOR ENSMUSG00000034391 Fbxo15 ENSMUST00000225445 ENSMUSP00000152915 TRANSLATION nonsense_mediated_decay - - - 282.0 0.0 0.0 0.0 38.7 0.0 -4,-5 0.0353 - -2.0 MINOR ENSMUSG00000034391 Fbxo15 ENSMUST00000223789 ENSMUSP00000158102 TRANSLATION protein_coding - - - 512.0 0.0 0.0 0.0 39.9 0.0 -4,0 0.0706 - 2.0 ALTERNATIVE:2 ENSMUSG00000034391 Fbxo15 ENSMUST00000037718 ENSMUSP00000045925 TRANSLATION protein_coding - CCDS37877.1 1 478.0 0.0 0.0 0.0 39.9 0.0 -4,-5 0.1723 - 2.0 ALTERNATIVE:2 ENSMUSG00000034391 Fbxo15 ENSMUST00000224427 - NO_TRANSLATION retained_intron ENSMUSG00000034391 Fbxo15 ENSMUST00000225015 ENSMUSP00000153105 TRANSLATION protein_coding start - - 76.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034391 Fbxo15 ENSMUST00000224467 ENSMUSP00000153473 TRANSLATION protein_coding - - - 433.0 0.0 0.0 3.9 38.7 0.0 -4,-5 1.0 - 3.0 PRINCIPAL:2 ENSMUSG00000103255 Pcdhac1 ENSMUST00000007584 ENSMUSP00000007584 TRANSLATION protein_coding - CCDS29167.1 1 964.0 50.0 0.6 4.9 557.6 0.0 3,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000024558 Mapk4 ENSMUST00000160601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024558 Mapk4 ENSMUST00000162863 ENSMUSP00000124408 TRANSLATION nonsense_mediated_decay - - 1 193.0 17.0 1.165 0.0 149.9 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024558 Mapk4 ENSMUST00000091851 ENSMUSP00000089462 TRANSLATION protein_coding - CCDS37856.1 1 583.0 17.0 3.73 8.7 241.7 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000024558 Mapk4 ENSMUST00000159162 ENSMUSP00000123922 TRANSLATION protein_coding - - 5 233.0 17.0 2.0 1.0 208.4 0.0 -4,-5 0.0437 3 12.54 MINOR ENSMUSG00000056632 Dsg3 ENSMUST00000070892 ENSMUSP00000064718 TRANSLATION protein_coding - CCDS29083.1 1 993.0 36.0 8.8 0.0 196.8 0.0 2,-3 1.0 20 14.0 PRINCIPAL:2 ENSMUSG00000056632 Dsg3 ENSMUST00000234945 ENSMUSP00000157289 TRANSLATION protein_coding - - - 929.0 36.0 8.8 0.0 196.8 0.0 2,-3 0.245 17 14.0 ALTERNATIVE:2 ENSMUSG00000037013 Ss18 ENSMUST00000040964 ENSMUSP00000047867 TRANSLATION protein_coding - CCDS50225.1 1 344.0 0.0 1.814 1.0 106.3 0.0 -4,-2 0.3871 3 8.0 MINOR ENSMUSG00000037013 Ss18 ENSMUST00000234120 ENSMUSP00000157190 TRANSLATION nonsense_mediated_decay - - - 41.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000037013 Ss18 ENSMUST00000234737 - NO_TRANSLATION retained_intron ENSMUSG00000037013 Ss18 ENSMUST00000234524 ENSMUSP00000157096 TRANSLATION protein_coding - - - 313.0 0.0 1.814 1.0 106.3 0.0 -4,-2 0.2435 3 8.0 MINOR ENSMUSG00000037013 Ss18 ENSMUST00000235043 - NO_TRANSLATION retained_intron ENSMUSG00000037013 Ss18 ENSMUST00000235011 ENSMUSP00000157229 TRANSLATION protein_coding start - - 143.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037013 Ss18 ENSMUST00000234997 - NO_TRANSLATION retained_intron ENSMUSG00000037013 Ss18 ENSMUST00000238844 - NO_TRANSLATION retained_intron ENSMUSG00000037013 Ss18 ENSMUST00000234544 - NO_TRANSLATION retained_intron ENSMUSG00000037013 Ss18 ENSMUST00000092041 ENSMUSP00000089673 TRANSLATION protein_coding - CCDS57116.1 1 387.0 0.0 1.814 21.1 106.3 0.0 -4,-2 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000037013 Ss18 ENSMUST00000040924 ENSMUSP00000046320 TRANSLATION protein_coding - CCDS29070.1 1 418.0 0.0 1.814 20.7 106.3 0.0 -4,-2 0.9488 3 11.92 ALTERNATIVE:1 ENSMUSG00000037013 Ss18 ENSMUST00000234224 ENSMUSP00000157300 TRANSLATION nonsense_mediated_decay - - - 61.0 0.0 1.15 0.0 63.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000024474 Ik ENSMUST00000235721 - NO_TRANSLATION retained_intron ENSMUSG00000024474 Ik ENSMUST00000237774 - NO_TRANSLATION retained_intron ENSMUSG00000024474 Ik ENSMUST00000236760 - NO_TRANSLATION retained_intron ENSMUSG00000024474 Ik ENSMUST00000235165 - NO_TRANSLATION retained_intron ENSMUSG00000024474 Ik ENSMUST00000237095 ENSMUSP00000158258 TRANSLATION protein_coding stop - - 133.0 0.0 0.0 0.0 152.4 0.0 -4,-7 0.7199 3 -2.0 PRINCIPAL:1 ENSMUSG00000024474 Ik ENSMUST00000235693 - NO_TRANSLATION retained_intron ENSMUSG00000024474 Ik ENSMUST00000237809 - NO_TRANSLATION retained_intron ENSMUSG00000024474 Ik ENSMUST00000224284 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052713 Zfp608 ENSMUST00000237844 ENSMUSP00000157650 TRANSLATION nonsense_mediated_decay - - - 303.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0276 3 -2.0 MINOR ENSMUSG00000052713 Zfp608 ENSMUST00000237009 - NO_TRANSLATION retained_intron ENSMUSG00000052713 Zfp608 ENSMUST00000238150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052713 Zfp608 ENSMUST00000064763 ENSMUSP00000068192 TRANSLATION protein_coding - CCDS37824.1 1 1511.0 4.0 0.0 8.4 0.0 0.0 -4,-5 1.0 11 7.0 PRINCIPAL:1 ENSMUSG00000053477 Tcf4 ENSMUST00000066717 ENSMUSP00000067318 TRANSLATION protein_coding - - 1 692.0 0.0 2.325 0.0 44.6 0.0 -4,-5 0.0557 6 8.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000209174 ENSMUSP00000147155 TRANSLATION protein_coding stop - 5 163.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202610 ENSMUSP00000144670 TRANSLATION protein_coding - - 5 610.0 0.0 2.325 3.9 44.6 0.0 -4,-5 0.2166 7 8.752 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201589 - NO_TRANSLATION retained_intron ENSMUSG00000053477 Tcf4 ENSMUST00000202765 ENSMUSP00000144332 TRANSLATION protein_coding stop - 5 224.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 1 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201627 ENSMUSP00000144649 TRANSLATION protein_coding stop - 5 106.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201410 ENSMUSP00000143950 TRANSLATION protein_coding - - 5 537.0 0.0 1.2 7.3 44.6 0.0 -4,-6 0.4516 4 6.732 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202458 ENSMUSP00000143875 TRANSLATION protein_coding - - 5 587.0 0.0 1.2 1.2 44.6 0.0 -4,-6 0.1497 5 5.148 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000155695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053477 Tcf4 ENSMUST00000114985 ENSMUSP00000110636 TRANSLATION protein_coding - CCDS29329.1 1 670.0 0.0 2.325 13.8 44.6 0.0 -4,-5 1.0 7 11.324 PRINCIPAL:4 ENSMUSG00000053477 Tcf4 ENSMUST00000202474 ENSMUSP00000143820 TRANSLATION protein_coding - - 5 507.0 0.0 1.2 2.0 44.6 0.0 -4,-7 0.178 4 5.356 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202674 ENSMUSP00000144221 TRANSLATION protein_coding - - 5 641.0 0.0 1.575 0.0 44.6 0.0 -4,-7 0.0584 7 6.062 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201631 ENSMUSP00000144285 TRANSLATION protein_coding - - 5 642.0 0.0 1.575 9.1 44.6 0.0 -4,-7 0.6179 7 8.166 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202350 ENSMUSP00000144154 TRANSLATION protein_coding stop - 5 155.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000114980 ENSMUSP00000110631 TRANSLATION protein_coding - CCDS29329.1 5 670.0 0.0 2.325 13.8 44.6 0.0 -4,-5 1.0 7 11.324 PRINCIPAL:4 ENSMUSG00000053477 Tcf4 ENSMUST00000209116 ENSMUSP00000147136 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000200703 ENSMUSP00000144583 TRANSLATION protein_coding stop - 5 167.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202354 ENSMUSP00000144646 TRANSLATION protein_coding - - 5 641.0 0.0 1.575 7.6 44.6 0.0 -4,-7 0.5281 7 7.778 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000114978 ENSMUSP00000110629 TRANSLATION protein_coding - - 1 511.0 0.0 1.2 12.2 44.6 0.0 -4,-5 0.7092 5 8.004 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201964 ENSMUSP00000144070 TRANSLATION protein_coding stop - 5 172.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201124 ENSMUSP00000144080 TRANSLATION protein_coding stop - 5 201.0 0.0 0.375 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000200921 ENSMUSP00000143892 TRANSLATION protein_coding stop - 3 100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000200902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053477 Tcf4 ENSMUST00000201045 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053477 Tcf4 ENSMUST00000202058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053477 Tcf4 ENSMUST00000207214 ENSMUSP00000146869 TRANSLATION protein_coding stop - 5 117.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202074 ENSMUSP00000144544 TRANSLATION protein_coding stop - 5 145.0 0.0 0.375 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000136019 - NO_TRANSLATION retained_intron ENSMUSG00000053477 Tcf4 ENSMUST00000146908 - NO_TRANSLATION retained_intron ENSMUSG00000053477 Tcf4 ENSMUST00000114977 ENSMUSP00000110628 TRANSLATION protein_coding - - 1 507.0 0.0 1.2 16.4 44.6 0.0 -4,-5 0.7838 5 9.096 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000203002 ENSMUSP00000144315 TRANSLATION protein_coding stop - 5 138.0 0.0 1.125 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000125154 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053477 Tcf4 ENSMUST00000201181 ENSMUSP00000144376 TRANSLATION protein_coding stop - 5 107.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202435 ENSMUSP00000144407 TRANSLATION protein_coding - - 5 646.0 0.0 1.575 9.1 44.6 0.0 -4,-7 0.6176 7 8.166 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202057 ENSMUSP00000144647 TRANSLATION protein_coding - - 5 537.0 0.0 1.2 7.3 44.6 0.0 -4,-6 0.4516 4 6.732 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201205 ENSMUSP00000144273 TRANSLATION protein_coding - - 5 541.0 0.0 1.2 7.3 44.6 0.0 -4,-6 0.4532 4 6.732 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201235 ENSMUSP00000144473 TRANSLATION protein_coding stop - 5 184.0 0.0 0.375 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201094 ENSMUSP00000144169 TRANSLATION protein_coding - - 5 537.0 0.0 1.2 7.3 44.6 0.0 -4,-6 0.4516 4 6.732 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000078486 ENSMUSP00000077577 TRANSLATION protein_coding - CCDS29329.1 5 670.0 0.0 2.325 13.8 44.6 0.0 -4,-5 1.0 7 11.324 PRINCIPAL:4 ENSMUSG00000053477 Tcf4 ENSMUST00000145918 ENSMUSP00000144298 TRANSLATION protein_coding stop - 5 121.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201299 ENSMUSP00000144599 TRANSLATION protein_coding stop - 5 143.0 0.0 0.375 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201091 ENSMUSP00000144386 TRANSLATION protein_coding stop - 3 271.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 3 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000128706 ENSMUSP00000144519 TRANSLATION protein_coding - - 1 178.0 0.0 0.375 0.0 0.0 0.0 -4,-7 0.0 3 0.966 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201747 - NO_TRANSLATION retained_intron ENSMUSG00000053477 Tcf4 ENSMUST00000201537 ENSMUSP00000144655 TRANSLATION protein_coding stop - 5 157.0 0.0 0.375 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000200862 ENSMUSP00000144338 TRANSLATION protein_coding stop - 5 320.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0018 2 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000200966 ENSMUSP00000144045 TRANSLATION protein_coding stop - 5 168.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000136151 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053477 Tcf4 ENSMUST00000202477 ENSMUSP00000144219 TRANSLATION protein_coding - - 5 537.0 0.0 1.2 7.3 44.6 0.0 -4,-6 0.4516 4 6.732 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202751 ENSMUSP00000144064 TRANSLATION nonsense_mediated_decay - - 5 198.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000200813 ENSMUSP00000144397 TRANSLATION protein_coding stop - 5 119.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202116 ENSMUSP00000144512 TRANSLATION protein_coding - CCDS50315.1 1 666.0 0.0 2.325 13.8 44.6 0.0 -4,-5 0.9827 7 11.324 ALTERNATIVE:1 ENSMUSG00000053477 Tcf4 ENSMUST00000201892 - NO_TRANSLATION retained_intron ENSMUSG00000053477 Tcf4 ENSMUST00000202772 ENSMUSP00000143987 TRANSLATION protein_coding - - 5 606.0 0.0 2.325 3.9 44.6 0.0 -4,-5 0.2168 7 8.752 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201037 ENSMUSP00000144488 TRANSLATION protein_coding stop - 5 220.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201288 ENSMUSP00000144494 TRANSLATION protein_coding stop - 5 220.0 0.0 1.125 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000201781 ENSMUSP00000144209 TRANSLATION protein_coding - - 5 646.0 0.0 1.575 9.1 44.6 0.0 -4,-7 0.6176 7 8.166 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000202937 ENSMUSP00000143857 TRANSLATION protein_coding - - 5 541.0 0.0 1.2 7.3 44.6 0.0 -4,-6 0.4532 4 6.732 MINOR ENSMUSG00000053477 Tcf4 ENSMUST00000114982 ENSMUSP00000110633 TRANSLATION protein_coding - CCDS50315.1 1 666.0 0.0 2.325 13.8 44.6 0.0 -4,-5 0.9827 7 11.324 ALTERNATIVE:1 ENSMUSG00000053477 Tcf4 ENSMUST00000201081 - NO_TRANSLATION retained_intron ENSMUSG00000053477 Tcf4 ENSMUST00000126946 - NO_TRANSLATION retained_intron ENSMUSG00000053477 Tcf4 ENSMUST00000201157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024515 Smad4 ENSMUST00000114939 ENSMUSP00000110589 TRANSLATION protein_coding - CCDS29337.1 1 551.0 4.0 5.72 18.7 397.8 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000024515 Smad4 ENSMUST00000129326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024515 Smad4 ENSMUST00000142672 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024515 Smad4 ENSMUST00000131339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024515 Smad4 ENSMUST00000147315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024515 Smad4 ENSMUST00000025393 ENSMUSP00000025393 TRANSLATION protein_coding - CCDS29337.1 1 551.0 4.0 5.72 18.7 397.8 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000078963 Hsbp1l1 ENSMUST00000237192 ENSMUSP00000158095 TRANSLATION protein_coding - CCDS50333.1 - 72.0 0.0 2.0 2.8 58.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000078963 Hsbp1l1 ENSMUST00000166219 ENSMUSP00000132852 TRANSLATION protein_coding - CCDS50333.1 1 72.0 0.0 2.0 2.8 58.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000024614 Tmx3 ENSMUST00000236213 - NO_TRANSLATION retained_intron ENSMUSG00000024614 Tmx3 ENSMUST00000235708 ENSMUSP00000157665 TRANSLATION protein_coding stop - - 33.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024614 Tmx3 ENSMUST00000235634 ENSMUSP00000158263 TRANSLATION protein_coding - - - 372.0 4.0 9.7 0.0 171.7 0.0 2,-2 0.0968 8 13.198 MINOR ENSMUSG00000024614 Tmx3 ENSMUST00000025515 ENSMUSP00000025515 TRANSLATION protein_coding - CCDS37879.1 1 456.0 4.0 11.1 1.4 171.7 0.0 2,-2 1.0 10 17.0 PRINCIPAL:1 ENSMUSG00000024614 Tmx3 ENSMUST00000236602 ENSMUSP00000157738 TRANSLATION nonsense_mediated_decay start - - 54.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024614 Tmx3 ENSMUST00000235132 - NO_TRANSLATION retained_intron ENSMUSG00000024614 Tmx3 ENSMUST00000237852 - NO_TRANSLATION retained_intron ENSMUSG00000024614 Tmx3 ENSMUST00000236081 - NO_TRANSLATION retained_intron ENSMUSG00000024261 Syt4 ENSMUST00000025110 ENSMUSP00000025110 TRANSLATION protein_coding - CCDS29109.1 1 425.0 20.0 2.6 21.7 149.1 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000024350 Dnajc18 ENSMUST00000236738 ENSMUSP00000157688 TRANSLATION protein_coding stop - - 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024350 Dnajc18 ENSMUST00000237995 ENSMUSP00000158370 TRANSLATION protein_coding stop - - 163.0 0.0 1.75 0.0 86.1 0.0 -4,-5 0.0235 1 -2.0 MINOR ENSMUSG00000024350 Dnajc18 ENSMUST00000235930 ENSMUSP00000157528 TRANSLATION nonsense_mediated_decay start - - 68.0 0.0 0.15 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024350 Dnajc18 ENSMUST00000025208 ENSMUSP00000025208 TRANSLATION protein_coding - CCDS29148.1 1 357.0 0.0 1.75 11.8 175.2 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000001804 Dsg4 ENSMUST00000019426 ENSMUSP00000019426 TRANSLATION protein_coding - CCDS29082.1 1 1041.0 34.0 8.63 6.7 185.3 0.0 2,-3 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000024486 Hbegf ENSMUST00000237621 - NO_TRANSLATION retained_intron ENSMUSG00000024486 Hbegf ENSMUST00000025363 ENSMUSP00000025363 TRANSLATION protein_coding - CCDS29153.1 1 208.0 0.0 1.75 12.5 22.3 0.0 3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000024486 Hbegf ENSMUST00000236520 - NO_TRANSLATION retained_intron ENSMUSG00000103125 Gm37388 ENSMUST00000193984 ENSMUSP00000142274 TRANSLATION protein_coding,RT start/stop - 5 143.0 0.0 0.0 0.0 51.8 0.0 -4,-7 0.6958 - -2.0 PRINCIPAL:1 ENSMUSG00000102312 Pcdha3 ENSMUST00000192503 ENSMUSP00000141989 TRANSLATION protein_coding - CCDS79615.1 1 942.0 49.0 1.0 1.1 549.1 0.0 2,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000073551 Spink13 ENSMUST00000097557 ENSMUSP00000095165 TRANSLATION protein_coding - CCDS50305.1 1 97.0 0.0 2.275 0.4 43.6 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073551 Spink13 ENSMUST00000235190 ENSMUSP00000157623 TRANSLATION protein_coding - CCDS50305.1 - 97.0 0.0 2.275 0.4 43.6 0.0 2,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060201 Spink7 ENSMUST00000076194 ENSMUSP00000075551 TRANSLATION protein_coding - CCDS50304.1 5 85.0 0.0 1.5 6.0 46.4 0.0 4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060201 Spink7 ENSMUST00000235321 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024421 Lama3 ENSMUST00000092070 ENSMUSP00000089703 TRANSLATION protein_coding - CCDS50222.1 5 3330.0 4.0 21.294 0.1 1476.9 0.0 3,-2 1.0 48 16.0 PRINCIPAL:1 ENSMUSG00000024421 Lama3 ENSMUST00000188815 ENSMUSP00000140104 TRANSLATION protein_coding - CCDS84360.1 1 1724.0 4.0 12.532 7.8 780.4 0.0 3,-2 0.6161 31 6.0 MINOR ENSMUSG00000050321 Neto1 ENSMUST00000235167 ENSMUSP00000158106 TRANSLATION protein_coding start - - 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000050321 Neto1 ENSMUST00000236600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050321 Neto1 ENSMUST00000058829 ENSMUSP00000057340 TRANSLATION protein_coding - CCDS29387.1 1 533.0 3.0 2.54 25.1 163.3 0.0 0,-3 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000103472 Pcdhga7 ENSMUST00000193476 ENSMUSP00000142126 TRANSLATION protein_coding - - - 813.0 56.0 0.8 0.0 457.0 1.0 3,-2 0.1896 4 12.552 MINOR ENSMUSG00000103472 Pcdhga7 ENSMUST00000192511 ENSMUSP00000141704 TRANSLATION protein_coding - CCDS79629.1 1 935.0 56.0 0.8 0.0 547.8 1.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000057455 Rit2 ENSMUST00000139924 ENSMUSP00000122938 TRANSLATION protein_coding - - 1 97.0 16.0 2.11 0.0 59.7 0.0 -4,-5 0.0 1 1.95 MINOR ENSMUSG00000057455 Rit2 ENSMUST00000153196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057455 Rit2 ENSMUST00000153060 ENSMUSP00000114323 TRANSLATION protein_coding - CCDS29108.1 1 217.0 23.0 4.8 11.6 174.3 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000057455 Rit2 ENSMUST00000082070 ENSMUSP00000080724 TRANSLATION nonsense_mediated_decay - - 1 77.0 9.0 1.3 0.0 33.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024480 Ap3s1 ENSMUST00000025357 ENSMUSP00000025357 TRANSLATION protein_coding - CCDS29236.1 1 193.0 0.0 4.5 34.9 182.7 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000024480 Ap3s1 ENSMUST00000234998 - NO_TRANSLATION retained_intron ENSMUSG00000024480 Ap3s1 ENSMUST00000226108 ENSMUSP00000153510 TRANSLATION nonsense_mediated_decay - - - 162.0 0.0 4.5 24.3 182.7 0.0 -4,-7 0.7124 - -2.0 MINOR ENSMUSG00000024480 Ap3s1 ENSMUST00000225520 ENSMUSP00000153557 TRANSLATION protein_coding - - - 162.0 0.0 4.5 24.3 182.7 0.0 -4,-7 0.7124 2 14.748 MINOR ENSMUSG00000024480 Ap3s1 ENSMUST00000225415 ENSMUSP00000153290 TRANSLATION nonsense_mediated_decay - - - 54.0 0.0 1.75 0.0 54.2 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024480 Ap3s1 ENSMUST00000224622 ENSMUSP00000153388 TRANSLATION protein_coding - - - 162.0 0.0 4.5 24.3 182.7 0.0 -4,-7 0.7124 2 14.748 MINOR ENSMUSG00000024425 Ndfip1 ENSMUST00000236052 ENSMUSP00000157954 TRANSLATION protein_coding - - - 214.0 0.0 0.0 0.0 31.8 3.0 -4,-5 0.0926 3 0.0 ALTERNATIVE:2 ENSMUSG00000024425 Ndfip1 ENSMUST00000238135 - NO_TRANSLATION retained_intron ENSMUSG00000024425 Ndfip1 ENSMUST00000025293 ENSMUSP00000025293 TRANSLATION protein_coding - CCDS37789.1 1 221.0 0.0 0.0 2.1 28.7 3.0 -1,-4 1.0 3 1.0 PRINCIPAL:2 ENSMUSG00000024425 Ndfip1 ENSMUST00000236171 ENSMUSP00000157630 TRANSLATION protein_coding start - - 164.0 0.0 0.0 0.0 32.0 3.0 -4,-5 0.0482 3 -2.0 MINOR ENSMUSG00000024425 Ndfip1 ENSMUST00000236480 ENSMUSP00000158119 TRANSLATION nonsense_mediated_decay - - - 167.0 0.0 0.0 0.0 0.0 2.0 -1,-4 0.0034 2 -2.0 MINOR ENSMUSG00000024425 Ndfip1 ENSMUST00000235458 - NO_TRANSLATION retained_intron ENSMUSG00000024425 Ndfip1 ENSMUST00000236803 - NO_TRANSLATION retained_intron ENSMUSG00000024425 Ndfip1 ENSMUST00000236085 ENSMUSP00000158314 TRANSLATION protein_coding - CCDS37789.1 - 221.0 0.0 0.0 2.1 28.7 3.0 -1,-4 1.0 3 1.0 PRINCIPAL:2 ENSMUSG00000025423 Pias2 ENSMUST00000114777 ENSMUSP00000110425 TRANSLATION protein_coding - CCDS37866.1 1 621.0 4.0 7.03 0.0 198.9 0.0 -4,-5 0.287 9 16.0 MINOR ENSMUSG00000025423 Pias2 ENSMUST00000114776 ENSMUSP00000110424 TRANSLATION protein_coding - CCDS50323.1 1 565.0 4.0 6.7 4.8 198.9 0.0 -4,-2 0.3858 8 16.388 MINOR ENSMUSG00000025423 Pias2 ENSMUST00000168882 ENSMUSP00000131485 TRANSLATION protein_coding - CCDS50324.1 1 614.0 4.0 6.7 15.5 198.9 0.0 -4,-2 1.0 9 19.34 PRINCIPAL:1 ENSMUSG00000025423 Pias2 ENSMUST00000235135 ENSMUSP00000157458 TRANSLATION nonsense_mediated_decay - - - 252.0 0.0 3.08 0.0 69.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024560 Cxxc1 ENSMUST00000236679 - NO_TRANSLATION retained_intron ENSMUSG00000024560 Cxxc1 ENSMUST00000236663 - NO_TRANSLATION retained_intron ENSMUSG00000024560 Cxxc1 ENSMUST00000238037 - NO_TRANSLATION retained_intron ENSMUSG00000024560 Cxxc1 ENSMUST00000238176 - NO_TRANSLATION retained_intron ENSMUSG00000024560 Cxxc1 ENSMUST00000025444 ENSMUSP00000025444 TRANSLATION protein_coding - CCDS50320.1 1 660.0 16.0 2.93 8.0 451.0 0.0 -4,-5 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000024588 Fech ENSMUST00000236586 ENSMUSP00000157791 TRANSLATION protein_coding - CCDS29303.1 - 422.0 33.0 11.08 8.8 371.3 0.0 -3,1 1.0 16 16.152 PRINCIPAL:4 ENSMUSG00000024588 Fech ENSMUST00000238149 ENSMUSP00000158387 TRANSLATION nonsense_mediated_decay start - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000024588 Fech ENSMUST00000235947 ENSMUSP00000158161 TRANSLATION nonsense_mediated_decay start - - 149.0 5.0 1.85 0.0 58.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024588 Fech ENSMUST00000235766 ENSMUSP00000157863 TRANSLATION protein_coding - - - 366.0 23.0 7.13 0.0 255.3 0.0 -3,1 0.0012 11 0.0 MINOR ENSMUSG00000024588 Fech ENSMUST00000237680 ENSMUSP00000157946 TRANSLATION nonsense_mediated_decay - - - 122.0 3.0 1.33 0.0 32.2 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000024588 Fech ENSMUST00000235338 - NO_TRANSLATION retained_intron ENSMUSG00000024588 Fech ENSMUST00000237502 ENSMUSP00000157798 TRANSLATION protein_coding - - - 395.0 28.0 9.58 0.0 359.3 0.0 -3,1 0.0114 14 6.33 MINOR ENSMUSG00000024588 Fech ENSMUST00000237717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024588 Fech ENSMUST00000238082 - NO_TRANSLATION retained_intron ENSMUSG00000024588 Fech ENSMUST00000237358 ENSMUSP00000158038 TRANSLATION protein_coding - - - 417.0 33.0 11.08 0.0 371.3 0.0 -2,0 0.1814 16 14.0 MINOR ENSMUSG00000024588 Fech ENSMUST00000235356 - NO_TRANSLATION retained_intron ENSMUSG00000024588 Fech ENSMUST00000235843 - NO_TRANSLATION retained_intron ENSMUSG00000024588 Fech ENSMUST00000237891 ENSMUSP00000158505 TRANSLATION protein_coding stop - - 215.0 12.0 4.33 0.0 155.8 0.0 -4,-1 0.0 6 -2.0 MINOR ENSMUSG00000024588 Fech ENSMUST00000025484 ENSMUSP00000025484 TRANSLATION protein_coding - - 1 348.0 33.0 10.75 15.5 356.7 0.0 -4,-5 0.7972 16 16.006 ALTERNATIVE:1 ENSMUSG00000024588 Fech ENSMUST00000235215 ENSMUSP00000158210 TRANSLATION nonsense_mediated_decay - - - 37.0 3.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048410 Zfp407 ENSMUST00000182849 - NO_TRANSLATION retained_intron ENSMUSG00000048410 Zfp407 ENSMUST00000143597 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048410 Zfp407 ENSMUST00000125763 ENSMUSP00000118361 TRANSLATION protein_coding - CCDS50338.1 5 2246.0 77.0 5.34 0.1 38.5 0.0 -4,-5 1.0 14 18.0 PRINCIPAL:1 ENSMUSG00000048410 Zfp407 ENSMUST00000125450 ENSMUSP00000138633 TRANSLATION protein_coding start - 3 72.0 9.0 1.44 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000048410 Zfp407 ENSMUST00000156181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048410 Zfp407 ENSMUST00000182297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024575 Pde6a ENSMUST00000025468 ENSMUSP00000025468 TRANSLATION protein_coding - CCDS29283.1 1 860.0 4.0 18.5 12.3 354.6 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000024575 Pde6a ENSMUST00000135688 ENSMUSP00000115963 TRANSLATION protein_coding start - 1 182.0 1.0 3.25 0.0 99.2 0.0 -4,0 0.0 1 -2.0 MINOR ENSMUSG00000103793 Pcdhga6 ENSMUST00000195823 ENSMUSP00000141803 TRANSLATION protein_coding - CCDS79628.1 1 932.0 44.0 0.6 0.0 534.9 0.0 4,-1 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000063281 Zfp35 ENSMUST00000074941 ENSMUSP00000074475 TRANSLATION protein_coding - CCDS29097.1 1 580.0 72.0 1.0 0.4 409.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000012282 Wnt8a ENSMUST00000012426 ENSMUSP00000012426 TRANSLATION protein_coding - CCDS29129.1 1 354.0 0.0 3.98 2.0 306.6 0.0 2,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000042816 Gpr151 ENSMUST00000054738 ENSMUSP00000058887 TRANSLATION protein_coding - CCDS29215.1 - 422.0 0.0 0.2 2.0 62.5 0.0 -4,-2 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000024451 Arap3 ENSMUST00000235391 - NO_TRANSLATION retained_intron ENSMUSG00000024451 Arap3 ENSMUST00000236588 ENSMUSP00000157916 TRANSLATION protein_coding stop - - 124.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024451 Arap3 ENSMUST00000236534 ENSMUSP00000158060 TRANSLATION protein_coding start/stop - - 154.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024451 Arap3 ENSMUST00000237272 ENSMUSP00000157868 TRANSLATION protein_coding - - - 1460.0 4.0 7.85 0.1 362.2 0.0 -4,-5 0.1006 17 11.512 MINOR ENSMUSG00000024451 Arap3 ENSMUST00000237188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024451 Arap3 ENSMUST00000236772 - NO_TRANSLATION retained_intron ENSMUSG00000024451 Arap3 ENSMUST00000236134 ENSMUSP00000157951 TRANSLATION protein_coding stop - - 47.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024451 Arap3 ENSMUST00000042944 ENSMUSP00000035662 TRANSLATION protein_coding - CCDS29196.1 1 1538.0 4.0 8.85 1.2 403.7 0.0 -4,-6 1.0 17 17.0 PRINCIPAL:1 ENSMUSG00000024451 Arap3 ENSMUST00000237677 - NO_TRANSLATION retained_intron ENSMUSG00000024410 Rmc1 ENSMUST00000234814 - NO_TRANSLATION retained_intron ENSMUSG00000024410 Rmc1 ENSMUST00000134046 ENSMUSP00000118783 TRANSLATION protein_coding start/stop - 5 141.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000024410 Rmc1 ENSMUST00000155431 ENSMUSP00000157087 TRANSLATION nonsense_mediated_decay - - 5 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024410 Rmc1 ENSMUST00000138866 ENSMUSP00000121414 TRANSLATION nonsense_mediated_decay start - 5 134.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024410 Rmc1 ENSMUST00000139151 - NO_TRANSLATION retained_intron ENSMUSG00000024410 Rmc1 ENSMUST00000126523 ENSMUSP00000157072 TRANSLATION protein_coding - - 1 305.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0021 5 0.0 MINOR ENSMUSG00000024410 Rmc1 ENSMUST00000153233 - NO_TRANSLATION retained_intron ENSMUSG00000024410 Rmc1 ENSMUST00000234982 ENSMUSP00000157241 TRANSLATION protein_coding start - - 121.0 3.0 0.0 0.0 89.5 0.0 -4,-5 0.0008 1 -2.0 MINOR ENSMUSG00000024410 Rmc1 ENSMUST00000234457 ENSMUSP00000157003 TRANSLATION protein_coding start - - 131.0 0.0 0.0 0.0 68.5 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000024410 Rmc1 ENSMUST00000025276 ENSMUSP00000025276 TRANSLATION protein_coding - CCDS29063.1 1 657.0 0.0 0.0 23.4 233.2 0.0 -4,-5 1.0 14 10.0 PRINCIPAL:1 ENSMUSG00000024410 Rmc1 ENSMUST00000134756 - NO_TRANSLATION retained_intron ENSMUSG00000024410 Rmc1 ENSMUST00000127123 - NO_TRANSLATION retained_intron ENSMUSG00000057440 Mpp7 ENSMUST00000234571 ENSMUSP00000157306 TRANSLATION protein_coding - - - 427.0 5.0 7.0 0.0 179.8 0.0 -4,-7 0.0024 9 1.44 MINOR ENSMUSG00000057440 Mpp7 ENSMUST00000234510 ENSMUSP00000157260 TRANSLATION nonsense_mediated_decay - - - 321.0 0.0 6.15 1.0 179.8 0.0 -4,-7 0.0118 7 -2.0 MINOR ENSMUSG00000057440 Mpp7 ENSMUST00000235093 ENSMUSP00000157048 TRANSLATION protein_coding - - - 392.0 0.0 6.55 0.0 179.8 0.0 -4,-7 0.0027 7 0.54 MINOR ENSMUSG00000057440 Mpp7 ENSMUST00000234444 - NO_TRANSLATION retained_intron ENSMUSG00000057440 Mpp7 ENSMUST00000234639 - NO_TRANSLATION retained_intron ENSMUSG00000057440 Mpp7 ENSMUST00000234210 - NO_TRANSLATION retained_intron ENSMUSG00000057440 Mpp7 ENSMUST00000234599 - NO_TRANSLATION retained_intron ENSMUSG00000057440 Mpp7 ENSMUST00000234366 - NO_TRANSLATION retained_intron ENSMUSG00000057440 Mpp7 ENSMUST00000233992 - NO_TRANSLATION retained_intron ENSMUSG00000057440 Mpp7 ENSMUST00000235095 - NO_TRANSLATION retained_intron ENSMUSG00000057440 Mpp7 ENSMUST00000234874 ENSMUSP00000157061 TRANSLATION protein_coding stop - - 104.0 0.0 2.3 0.0 49.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000057440 Mpp7 ENSMUST00000234522 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057440 Mpp7 ENSMUST00000234812 ENSMUSP00000157345 TRANSLATION protein_coding stop - - 354.0 0.0 6.15 0.0 179.8 0.0 -4,-7 0.0027 7 -2.0 MINOR ENSMUSG00000057440 Mpp7 ENSMUST00000115869 ENSMUSP00000111535 TRANSLATION protein_coding - CCDS50217.1 5 576.0 19.0 9.28 26.3 338.1 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000024647 Cbln2 ENSMUST00000169470 ENSMUSP00000126810 TRANSLATION protein_coding - CCDS29388.1 1 224.0 0.0 2.5 8.2 95.4 0.0 -1,1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000024647 Cbln2 ENSMUST00000122079 ENSMUSP00000113695 TRANSLATION protein_coding - CCDS29388.1 1 224.0 0.0 2.5 8.2 95.4 0.0 -1,1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000024647 Cbln2 ENSMUST00000122464 ENSMUSP00000113996 TRANSLATION protein_coding - CCDS29388.1 1 224.0 0.0 2.5 8.2 95.4 0.0 -1,1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000024647 Cbln2 ENSMUST00000068423 ENSMUSP00000068863 TRANSLATION protein_coding - CCDS29388.1 1 224.0 0.0 2.5 8.2 95.4 0.0 -1,1 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000024269 Tpgs2 ENSMUST00000148255 ENSMUSP00000122538 TRANSLATION protein_coding - CCDS50240.1 1 241.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1314 3 0.0 ALTERNATIVE:2 ENSMUSG00000024269 Tpgs2 ENSMUST00000115817 ENSMUSP00000111484 TRANSLATION protein_coding - CCDS29105.2 1 296.0 0.0 0.0 3.6 0.0 0.0 -4,-5 1.0 3 1.0 PRINCIPAL:2 ENSMUSG00000102918 Pcdhgc3 ENSMUST00000192103 ENSMUSP00000141611 TRANSLATION nonsense_mediated_decay - - 5 78.0 0.0 1.0 0.0 46.4 0.0 2,-2 0.0012 - -2.0 MINOR ENSMUSG00000102918 Pcdhgc3 ENSMUST00000194447 - NO_TRANSLATION retained_intron ENSMUSG00000102918 Pcdhgc3 ENSMUST00000076807 ENSMUSP00000076085 TRANSLATION protein_coding - CCDS29192.1 1 934.0 49.0 1.6 0.1 483.6 0.0 2,-2 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000024518 Rax ENSMUST00000238035 ENSMUSP00000158348 TRANSLATION protein_coding - - - 104.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000024518 Rax ENSMUST00000236247 - NO_TRANSLATION retained_intron ENSMUSG00000024518 Rax ENSMUST00000236444 - NO_TRANSLATION retained_intron ENSMUSG00000024518 Rax ENSMUST00000237710 - NO_TRANSLATION retained_intron ENSMUSG00000024518 Rax ENSMUST00000235720 ENSMUSP00000158513 TRANSLATION nonsense_mediated_decay start - - 164.0 0.0 0.866 0.0 49.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024518 Rax ENSMUST00000025396 ENSMUSP00000025396 TRANSLATION protein_coding - CCDS29311.1 1 342.0 0.0 1.13 4.6 118.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024518 Rax ENSMUST00000237506 ENSMUSP00000157707 TRANSLATION protein_coding stop - - 215.0 0.0 0.8 0.0 44.6 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000024519 Cplx4 ENSMUST00000025397 ENSMUSP00000025397 TRANSLATION protein_coding - CCDS29312.1 1 160.0 0.0 2.25 36.2 158.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024519 Cplx4 ENSMUST00000236894 - NO_TRANSLATION retained_intron ENSMUSG00000024440 Pcdh12 ENSMUST00000194012 ENSMUSP00000141907 TRANSLATION protein_coding - - 1 121.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 0.0 MINOR ENSMUSG00000024440 Pcdh12 ENSMUST00000195747 - NO_TRANSLATION retained_intron ENSMUSG00000024440 Pcdh12 ENSMUST00000025311 ENSMUSP00000025311 TRANSLATION protein_coding - CCDS29199.1 1 1180.0 52.0 0.4 0.0 259.7 0.0 2,-2 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000024440 Pcdh12 ENSMUST00000193123 - NO_TRANSLATION retained_intron ENSMUSG00000051663 Pcdhb1 ENSMUST00000052366 ENSMUSP00000057519 TRANSLATION protein_coding - CCDS29169.1 - 818.0 56.0 0.6 11.1 416.3 0.0 -2,-6 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000058152 Chsy3 ENSMUST00000238155 ENSMUSP00000158180 TRANSLATION nonsense_mediated_decay - CCDS37829.1 - 884.0 4.0 0.415 7.3 662.8 0.0 2,-4 1.0 6 -2.0 MINOR ENSMUSG00000058152 Chsy3 ENSMUST00000237594 - NO_TRANSLATION retained_intron ENSMUSG00000058152 Chsy3 ENSMUST00000080721 ENSMUSP00000079546 TRANSLATION protein_coding - CCDS37829.1 1 884.0 4.0 0.415 7.3 662.8 0.0 2,-4 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000024526 Cidea ENSMUST00000025404 ENSMUSP00000025404 TRANSLATION protein_coding - CCDS37846.1 1 217.0 0.0 3.9 4.9 103.5 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000058881 Zfp516 ENSMUST00000236468 ENSMUSP00000157810 TRANSLATION protein_coding start - - 194.0 4.0 1.698 0.0 27.3 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000058881 Zfp516 ENSMUST00000236858 ENSMUSP00000157930 TRANSLATION protein_coding stop - - 111.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000058881 Zfp516 ENSMUST00000235793 ENSMUSP00000158540 TRANSLATION protein_coding stop - - 93.0 8.0 1.5 0.0 40.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058881 Zfp516 ENSMUST00000071233 ENSMUSP00000071216 TRANSLATION protein_coding - CCDS29380.1 5 1157.0 35.0 2.366 0.1 109.1 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000058881 Zfp516 ENSMUST00000237340 ENSMUSP00000157867 TRANSLATION protein_coding stop - - 46.0 2.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000058881 Zfp516 ENSMUST00000235902 ENSMUSP00000158105 TRANSLATION protein_coding stop - - 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058881 Zfp516 ENSMUST00000171238 ENSMUSP00000126629 TRANSLATION protein_coding - CCDS29380.1 5 1157.0 35.0 2.366 0.1 109.1 0.0 -4,-5 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000043079 Synpo ENSMUST00000160395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043079 Synpo ENSMUST00000097566 ENSMUSP00000095174 TRANSLATION protein_coding - CCDS37833.1 1 901.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.3134 24 0.0 ALTERNATIVE:2 ENSMUSG00000043079 Synpo ENSMUST00000115318 ENSMUSP00000110973 TRANSLATION protein_coding - CCDS50298.1 1 690.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.2544 20 0.0 ALTERNATIVE:2 ENSMUSG00000043079 Synpo ENSMUST00000130044 ENSMUSP00000121756 TRANSLATION protein_coding - CCDS37833.1 2 901.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.3134 24 0.0 ALTERNATIVE:2 ENSMUSG00000043079 Synpo ENSMUST00000137894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043079 Synpo ENSMUST00000154857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043079 Synpo ENSMUST00000130360 ENSMUSP00000115355 TRANSLATION protein_coding - - 1 1100.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6931 28 0.0 PRINCIPAL:2 ENSMUSG00000043079 Synpo ENSMUST00000123288 ENSMUSP00000124122 TRANSLATION protein_coding stop - 3 15.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0664 - -2.0 MINOR ENSMUSG00000043079 Synpo ENSMUST00000143275 ENSMUSP00000125272 TRANSLATION protein_coding - - 5 929.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.1034 25 0.0 ALTERNATIVE:2 ENSMUSG00000043079 Synpo ENSMUST00000139236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043079 Synpo ENSMUST00000128528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043079 Synpo ENSMUST00000155195 ENSMUSP00000117897 TRANSLATION protein_coding - CCDS50298.1 1 690.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.2544 20 0.0 ALTERNATIVE:2 ENSMUSG00000024379 Tslp ENSMUST00000234876 - NO_TRANSLATION retained_intron ENSMUSG00000024379 Tslp ENSMUST00000025237 ENSMUSP00000025237 TRANSLATION protein_coding - CCDS29121.1 1 140.0 0.0 2.42 0.0 155.1 0.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073573 Spink11 ENSMUST00000097587 ENSMUSP00000095194 TRANSLATION protein_coding - CCDS50274.1 1 114.0 0.0 2.3 0.0 32.8 0.0 -4,-7 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000073573 Spink11 ENSMUST00000239421 ENSMUSP00000159307 TRANSLATION protein_coding - - - 88.0 0.0 2.3 0.0 32.8 0.0 2,-3 0.1266 1 6.0 ALTERNATIVE:2 ENSMUSG00000073573 Spink11 ENSMUST00000185266 - NO_TRANSLATION retained_intron ENSMUSG00000038299 Wdr36 ENSMUST00000234158 - NO_TRANSLATION retained_intron ENSMUSG00000038299 Wdr36 ENSMUST00000234798 - NO_TRANSLATION retained_intron ENSMUSG00000038299 Wdr36 ENSMUST00000053663 ENSMUSP00000052465 TRANSLATION protein_coding - CCDS50246.1 1 899.0 0.0 9.0945 15.3 286.8 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000038299 Wdr36 ENSMUST00000166214 ENSMUSP00000132189 TRANSLATION protein_coding - CCDS50245.1 1 883.0 0.0 9.0945 0.0 259.4 0.0 -4,-5 0.1921 17 10.356 MINOR ENSMUSG00000038299 Wdr36 ENSMUST00000234434 - NO_TRANSLATION retained_intron ENSMUSG00000103707 Pcdha6 ENSMUST00000193777 ENSMUSP00000141587 TRANSLATION protein_coding - CCDS79618.1 1 946.0 49.0 3.13 3.5 551.5 1.0 2,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000103707 Pcdha6 ENSMUST00000194751 ENSMUSP00000142285 TRANSLATION nonsense_mediated_decay - - 1 131.0 3.0 1.0 0.0 105.5 0.0 2,-2 0.0009 - -2.0 MINOR ENSMUSG00000103707 Pcdha6 ENSMUST00000193389 ENSMUSP00000141459 TRANSLATION protein_coding - - 1 900.0 49.0 3.13 1.1 463.8 1.0 2,-2 0.2506 - 12.778 MINOR ENSMUSG00000044595 Dnd1 ENSMUST00000061522 ENSMUSP00000054412 TRANSLATION protein_coding - CCDS29163.2 1 352.0 0.0 1.4 9.2 130.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044595 Dnd1 ENSMUST00000124038 - NO_TRANSLATION retained_intron ENSMUSG00000044595 Dnd1 ENSMUST00000155827 - NO_TRANSLATION retained_intron ENSMUSG00000032900 Tex43 ENSMUST00000035640 ENSMUSP00000038152 TRANSLATION protein_coding - CCDS29260.1 1 141.0 0.0 0.0 1.6 251.0 0.0 -4,-5 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000032900 Tex43 ENSMUST00000127591 ENSMUSP00000117284 TRANSLATION protein_coding start - 1 75.0 0.0 0.0 0.0 91.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032900 Tex43 ENSMUST00000153248 ENSMUSP00000116691 TRANSLATION nonsense_mediated_decay start - 3 80.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000032900 Tex43 ENSMUST00000147775 ENSMUSP00000115084 TRANSLATION protein_coding start - 1 84.0 0.0 0.0 0.0 78.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032900 Tex43 ENSMUST00000235602 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024231 Cul2 ENSMUST00000161317 ENSMUSP00000123903 TRANSLATION protein_coding stop - 5 582.0 0.0 14.58 0.0 495.5 0.0 -4,-6 0.0049 22 -2.0 MINOR ENSMUSG00000024231 Cul2 ENSMUST00000080089 ENSMUSP00000078988 TRANSLATION nonsense_mediated_decay - - 1 90.0 0.0 2.08 0.0 27.4 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024231 Cul2 ENSMUST00000162301 ENSMUSP00000125403 TRANSLATION protein_coding - CCDS29032.2 1 745.0 0.0 18.83 33.2 674.1 0.0 -4,-6 1.0 29 16.0 PRINCIPAL:1 ENSMUSG00000024231 Cul2 ENSMUST00000234414 ENSMUSP00000157136 TRANSLATION nonsense_mediated_decay - - - 111.0 0.0 3.08 0.0 45.6 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000024231 Cul2 ENSMUST00000159443 - NO_TRANSLATION retained_intron ENSMUSG00000024231 Cul2 ENSMUST00000234843 ENSMUSP00000157267 TRANSLATION nonsense_mediated_decay - - - 49.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024231 Cul2 ENSMUST00000025073 ENSMUSP00000025073 TRANSLATION protein_coding - - 1 706.0 0.0 17.83 0.0 623.2 0.0 -4,-6 0.024 26 6.948 MINOR ENSMUSG00000024268 Celf4 ENSMUST00000224028 - NO_TRANSLATION retained_intron ENSMUSG00000024268 Celf4 ENSMUST00000115816 ENSMUSP00000111483 TRANSLATION protein_coding - CCDS50241.1 1 504.0 0.0 7.9355 8.5 174.6 0.0 -4,-6 1.0 2 14.224 MINOR ENSMUSG00000024268 Celf4 ENSMUST00000224553 ENSMUSP00000153258 TRANSLATION protein_coding - - - 456.0 0.0 6.8695 8.2 139.6 0.0 -4,-6 0.3566 2 9.902 MINOR ENSMUSG00000024268 Celf4 ENSMUST00000225528 ENSMUSP00000153706 TRANSLATION nonsense_mediated_decay start - - 19.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024268 Celf4 ENSMUST00000225927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024268 Celf4 ENSMUST00000025117 ENSMUSP00000025117 TRANSLATION protein_coding - - 1 495.0 0.0 7.6055 14.5 174.6 0.0 -4,-6 0.9538 2 15.34 PRINCIPAL:1 ENSMUSG00000024268 Celf4 ENSMUST00000223704 ENSMUSP00000153326 TRANSLATION protein_coding - - - 485.0 0.0 7.6855 9.6 142.3 0.0 -4,-6 0.6123 2 12.112 MINOR ENSMUSG00000024268 Celf4 ENSMUST00000226091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024268 Celf4 ENSMUST00000224143 - NO_TRANSLATION retained_intron ENSMUSG00000024268 Celf4 ENSMUST00000225477 ENSMUSP00000153226 TRANSLATION protein_coding - CCDS29106.1 - 484.0 0.0 7.6855 9.6 142.3 0.0 -4,-6 0.7399 2 12.112 MINOR ENSMUSG00000024411 Aqp4 ENSMUST00000238946 ENSMUSP00000159185 TRANSLATION protein_coding - - - 330.0 8.0 4.95 1.0 247.3 8.0 1,-3 0.2155 - -2.0 MINOR ENSMUSG00000024411 Aqp4 ENSMUST00000234053 ENSMUSP00000157337 TRANSLATION protein_coding - - - 301.0 8.0 4.95 15.7 247.3 8.0 1,-3 0.7991 5 16.912 ALTERNATIVE:1 ENSMUSG00000024411 Aqp4 ENSMUST00000234518 ENSMUSP00000157239 TRANSLATION protein_coding - - - 301.0 8.0 4.95 15.7 247.3 8.0 1,-3 0.7991 5 16.912 ALTERNATIVE:1 ENSMUSG00000024411 Aqp4 ENSMUST00000234624 - NO_TRANSLATION retained_intron ENSMUSG00000024411 Aqp4 ENSMUST00000235044 ENSMUSP00000157000 TRANSLATION protein_coding - - - 301.0 8.0 4.95 15.7 247.3 8.0 1,-3 0.7991 5 16.912 ALTERNATIVE:1 ENSMUSG00000024411 Aqp4 ENSMUST00000234140 - NO_TRANSLATION retained_intron ENSMUSG00000024411 Aqp4 ENSMUST00000234643 ENSMUSP00000157060 TRANSLATION protein_coding - - - 301.0 8.0 4.95 15.7 247.3 8.0 1,-3 0.7991 5 16.912 ALTERNATIVE:1 ENSMUSG00000024411 Aqp4 ENSMUST00000234466 ENSMUSP00000157324 TRANSLATION protein_coding - - - 301.0 8.0 4.95 15.7 247.3 8.0 1,-3 0.7991 5 16.912 ALTERNATIVE:1 ENSMUSG00000024411 Aqp4 ENSMUST00000234473 ENSMUSP00000157152 TRANSLATION protein_coding - - - 301.0 8.0 4.95 15.7 247.3 8.0 1,-3 0.7991 5 16.912 ALTERNATIVE:1 ENSMUSG00000024411 Aqp4 ENSMUST00000234391 ENSMUSP00000157347 TRANSLATION protein_coding - - - 301.0 8.0 4.95 15.7 247.3 8.0 1,-3 0.7991 5 16.912 ALTERNATIVE:1 ENSMUSG00000024411 Aqp4 ENSMUST00000079081 ENSMUSP00000078088 TRANSLATION protein_coding - CCDS29073.1 1 323.0 8.0 5.214 18.1 247.3 8.0 -4,-1 1.0 5 18.0 PRINCIPAL:4 ENSMUSG00000024411 Aqp4 ENSMUST00000234533 ENSMUSP00000157261 TRANSLATION protein_coding stop - - 83.0 1.0 1.0 0.0 25.2 3.0 0,-3 0.0 3 -2.0 MINOR ENSMUSG00000024534 Sncaip ENSMUST00000179038 ENSMUSP00000137201 TRANSLATION protein_coding stop - 5 10.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0199 - -2.0 MINOR ENSMUSG00000024534 Sncaip ENSMUST00000178011 ENSMUSP00000137549 TRANSLATION protein_coding - CCDS37820.2 1 915.0 0.0 4.123 8.3 143.0 0.0 -4,-5 0.9384 3 10.919 ALTERNATIVE:1 ENSMUSG00000024534 Sncaip ENSMUST00000177861 ENSMUSP00000136021 TRANSLATION nonsense_mediated_decay - - 5 62.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024534 Sncaip ENSMUST00000178883 ENSMUSP00000136200 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024534 Sncaip ENSMUST00000115410 ENSMUSP00000111069 TRANSLATION protein_coding - - 1 914.0 0.0 4.123 8.3 143.0 0.0 -4,-5 0.7664 3 10.919 ALTERNATIVE:1 ENSMUSG00000024534 Sncaip ENSMUST00000178678 ENSMUSP00000137367 TRANSLATION protein_coding - CCDS57124.1 1 965.0 0.0 4.123 8.5 143.0 0.0 -4,-5 1.0 3 11.0 PRINCIPAL:4 ENSMUSG00000024534 Sncaip ENSMUST00000179625 ENSMUSP00000136838 TRANSLATION protein_coding - - 5 855.0 0.0 3.523 1.0 121.0 0.0 -4,-5 0.0255 2 6.3 MINOR ENSMUSG00000024534 Sncaip ENSMUST00000163742 ENSMUSP00000127189 TRANSLATION protein_coding - CCDS37820.2 5 915.0 0.0 4.123 8.3 143.0 0.0 -4,-5 0.9384 3 10.919 ALTERNATIVE:1 ENSMUSG00000024534 Sncaip ENSMUST00000025413 ENSMUSP00000025413 TRANSLATION protein_coding - CCDS57124.1 1 965.0 0.0 4.123 8.5 143.0 0.0 -4,-5 1.0 3 11.0 PRINCIPAL:4 ENSMUSG00000024534 Sncaip ENSMUST00000180259 ENSMUSP00000137282 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024534 Sncaip ENSMUST00000179689 ENSMUSP00000137107 TRANSLATION protein_coding - - 5 503.0 0.0 2.648 1.1 84.4 0.0 -4,-5 0.0111 2 4.587 MINOR ENSMUSG00000103567 Pcdhga5 ENSMUST00000193414 ENSMUSP00000141893 TRANSLATION protein_coding - CCDS79627.1 1 932.0 45.0 0.8 0.0 539.7 0.0 -2,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000024357 Sil1 ENSMUST00000025215 ENSMUSP00000025215 TRANSLATION protein_coding - CCDS29140.1 1 465.0 0.0 5.5 8.5 24.1 0.0 0,-3 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000024357 Sil1 ENSMUST00000237232 ENSMUSP00000158247 TRANSLATION protein_coding stop - - 80.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0022 - -2.0 MINOR ENSMUSG00000024357 Sil1 ENSMUST00000236387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024357 Sil1 ENSMUST00000237309 ENSMUSP00000157506 TRANSLATION protein_coding start - - 119.0 0.0 2.0 0.0 24.1 0.0 -4,-5 0.0024 - -2.0 MINOR ENSMUSG00000024357 Sil1 ENSMUST00000236007 ENSMUSP00000157932 TRANSLATION protein_coding - - - 53.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0022 - 0.0 MINOR ENSMUSG00000024357 Sil1 ENSMUST00000235619 ENSMUSP00000157636 TRANSLATION protein_coding - - - 417.0 0.0 5.5 0.0 22.8 0.0 0,-3 0.0765 11 11.676 MINOR ENSMUSG00000024357 Sil1 ENSMUST00000235691 ENSMUSP00000157444 TRANSLATION protein_coding stop - - 20.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000024357 Sil1 ENSMUST00000237896 ENSMUSP00000157521 TRANSLATION protein_coding - - - 327.0 0.0 5.0 0.0 22.8 0.0 -4,-5 0.0097 7 10.674 MINOR ENSMUSG00000024357 Sil1 ENSMUST00000235778 ENSMUSP00000157667 TRANSLATION protein_coding stop - - 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 2 -2.0 MINOR ENSMUSG00000024357 Sil1 ENSMUST00000235524 ENSMUSP00000157758 TRANSLATION protein_coding - - - 38.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0022 - 0.0 MINOR ENSMUSG00000024357 Sil1 ENSMUST00000237253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024537 Psmg2 ENSMUST00000235799 ENSMUSP00000157785 TRANSLATION protein_coding - - - 224.0 0.0 4.3 4.0 78.2 0.0 -4,-6 0.0415 5 7.782 MINOR ENSMUSG00000024537 Psmg2 ENSMUST00000236522 - NO_TRANSLATION retained_intron ENSMUSG00000024537 Psmg2 ENSMUST00000025418 ENSMUSP00000025418 TRANSLATION protein_coding - CCDS29324.1 1 264.0 0.0 5.35 24.2 122.1 0.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000025425 St8sia5 ENSMUST00000075290 ENSMUSP00000074764 TRANSLATION protein_coding - CCDS50325.1 1 412.0 13.0 5.75 12.1 258.8 0.0 -4,-7 0.7201 2 19.812 MINOR ENSMUSG00000025425 St8sia5 ENSMUST00000079618 ENSMUSP00000078566 TRANSLATION protein_coding - CCDS29353.1 1 376.0 13.0 5.75 25.5 258.8 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000025425 St8sia5 ENSMUST00000236592 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034006 Slc66a2 ENSMUST00000134545 ENSMUSP00000157740 TRANSLATION protein_coding - - 1 134.0 0.0 2.0 1.0 45.2 9.0 0,-3 0.008 - 1.0 MINOR ENSMUSG00000034006 Slc66a2 ENSMUST00000155039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034006 Slc66a2 ENSMUST00000123750 ENSMUSP00000121890 TRANSLATION protein_coding - CCDS50334.1 1 253.0 0.0 5.0 24.8 109.3 14.0 0,-3 0.9611 1 12.0 ALTERNATIVE:1 ENSMUSG00000034006 Slc66a2 ENSMUST00000131780 ENSMUSP00000117166 TRANSLATION protein_coding - CCDS29367.1 1 271.0 0.0 5.0 24.8 109.3 14.0 0,-3 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000034006 Slc66a2 ENSMUST00000140594 ENSMUSP00000119083 TRANSLATION protein_coding - CCDS29367.1 1 271.0 0.0 5.0 24.8 109.3 14.0 0,-3 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000034006 Slc66a2 ENSMUST00000091798 ENSMUSP00000089402 TRANSLATION protein_coding - CCDS29367.1 5 271.0 0.0 5.0 24.8 109.3 14.0 0,-3 1.0 1 12.0 PRINCIPAL:4 ENSMUSG00000034006 Slc66a2 ENSMUST00000070135 ENSMUSP00000069986 TRANSLATION protein_coding - CCDS50334.1 1 253.0 0.0 5.0 24.8 109.3 14.0 0,-3 0.9611 1 12.0 ALTERNATIVE:1 ENSMUSG00000034006 Slc66a2 ENSMUST00000151677 ENSMUSP00000157569 TRANSLATION protein_coding - - 1 134.0 0.0 2.0 1.0 45.2 9.0 0,-3 0.008 - 1.0 MINOR ENSMUSG00000034006 Slc66a2 ENSMUST00000157056 ENSMUSP00000115819 TRANSLATION protein_coding stop - 3 149.0 0.0 3.0 0.0 45.2 12.0 0,-3 0.0044 - -2.0 MINOR ENSMUSG00000034006 Slc66a2 ENSMUST00000144468 ENSMUSP00000121684 TRANSLATION protein_coding - - 1 209.0 0.0 4.0 0.0 74.8 14.0 0,-3 0.0061 - 5.002 MINOR ENSMUSG00000034006 Slc66a2 ENSMUST00000129043 ENSMUSP00000118670 TRANSLATION protein_coding - CCDS50334.1 1 253.0 0.0 5.0 24.8 109.3 14.0 0,-3 0.9611 1 12.0 ALTERNATIVE:1 ENSMUSG00000038791 Scgb3a2 ENSMUST00000187157 ENSMUSP00000140476 TRANSLATION protein_coding - CCDS79640.1 1 91.0 0.0 0.83 9.9 42.4 0.0 0,-4 1.0 - 13.938 PRINCIPAL:1 ENSMUSG00000038791 Scgb3a2 ENSMUST00000043803 ENSMUSP00000038872 TRANSLATION protein_coding - - 1 139.0 0.0 0.5 0.0 50.7 0.0 0,-4 0.0189 - 9.516 MINOR ENSMUSG00000038791 Scgb3a2 ENSMUST00000189750 ENSMUSP00000140375 TRANSLATION protein_coding - CCDS79641.1 1 113.0 0.0 0.83 0.0 51.5 0.0 0,-4 0.235 - 12.0 MINOR ENSMUSG00000091055 Siglec15 ENSMUST00000170760 ENSMUSP00000126901 TRANSLATION protein_coding - CCDS50329.1 1 342.0 0.0 2.0 0.4 45.1 0.0 -1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059336 Slc14a1 ENSMUST00000091813 ENSMUSP00000089421 TRANSLATION protein_coding - CCDS29360.1 1 384.0 0.0 7.1 11.0 366.8 9.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000059336 Slc14a1 ENSMUST00000160639 ENSMUSP00000125367 TRANSLATION protein_coding - CCDS29360.1 1 384.0 0.0 7.1 11.0 366.8 9.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000059336 Slc14a1 ENSMUST00000160292 ENSMUSP00000125114 TRANSLATION protein_coding - CCDS50330.1 1 440.0 0.0 7.1 0.0 366.8 9.0 -4,-5 0.2286 4 12.0 MINOR ENSMUSG00000024359 Hspa9 ENSMUST00000237399 - NO_TRANSLATION retained_intron ENSMUSG00000024359 Hspa9 ENSMUST00000235244 - NO_TRANSLATION retained_intron ENSMUSG00000024359 Hspa9 ENSMUST00000025217 ENSMUSP00000025217 TRANSLATION protein_coding - CCDS29138.1 1 679.0 19.0 12.7 13.5 895.1 0.0 -2,2 1.0 39 22.0 PRINCIPAL:1 ENSMUSG00000024359 Hspa9 ENSMUST00000237289 - NO_TRANSLATION retained_intron ENSMUSG00000024359 Hspa9 ENSMUST00000236908 - NO_TRANSLATION retained_intron ENSMUSG00000042514 Klhl14 ENSMUST00000122333 ENSMUSP00000113755 TRANSLATION protein_coding - CCDS37748.1 5 630.0 0.0 5.55 9.2 255.9 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000042514 Klhl14 ENSMUST00000049105 ENSMUSP00000042015 TRANSLATION protein_coding - CCDS37748.1 1 630.0 0.0 5.55 9.2 255.9 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000046886 Zfp474 ENSMUST00000209270 ENSMUSP00000147873 TRANSLATION protein_coding - CCDS29248.1 1 347.0 6.0 0.0 0.1 149.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000046886 Zfp474 ENSMUST00000211585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046886 Zfp474 ENSMUST00000072666 ENSMUSP00000072453 TRANSLATION protein_coding - CCDS29248.1 1 347.0 6.0 0.0 0.1 149.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000024521 Pmaip1 ENSMUST00000237161 ENSMUSP00000158228 TRANSLATION protein_coding - - - 51.0 0.0 1.0 9.1 93.9 0.0 -4,-7 0.8342 - 9.078 MINOR ENSMUSG00000024521 Pmaip1 ENSMUST00000236933 ENSMUSP00000158157 TRANSLATION protein_coding - - - 54.0 0.0 1.0 9.2 104.5 0.0 -4,-2 0.9007 - 9.75 MINOR ENSMUSG00000024521 Pmaip1 ENSMUST00000025399 ENSMUSP00000025399 TRANSLATION protein_coding - CCDS29315.1 1 103.0 0.0 2.0 0.1 142.0 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000102543 Pcdhgc5 ENSMUST00000193890 ENSMUSP00000142214 TRANSLATION protein_coding stop - 3 107.0 0.0 0.0 0.0 94.2 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000102543 Pcdhgc5 ENSMUST00000055935 ENSMUSP00000060949 TRANSLATION protein_coding - CCDS29194.1 1 944.0 43.0 0.6 0.0 496.9 0.0 2,-1 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000102543 Pcdhgc5 ENSMUST00000192875 - NO_TRANSLATION retained_intron ENSMUSG00000102543 Pcdhgc5 ENSMUST00000193941 ENSMUSP00000141256 TRANSLATION protein_coding - - 1 55.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - 0.0 MINOR ENSMUSG00000024236 Svil ENSMUST00000131609 ENSMUSP00000122242 TRANSLATION nonsense_mediated_decay - - 5 2031.0 6.0 3.068 0.0 30.3 0.0 -4,-6 0.0636 56 -2.0 MINOR ENSMUSG00000024236 Svil ENSMUST00000139761 - NO_TRANSLATION retained_intron ENSMUSG00000024236 Svil ENSMUST00000129543 - NO_TRANSLATION retained_intron ENSMUSG00000024236 Svil ENSMUST00000143254 ENSMUSP00000119287 TRANSLATION protein_coding - CCDS84352.1 5 1766.0 6.0 5.648 0.1 87.6 0.0 -4,-6 0.5227 51 14.0 ALTERNATIVE:2 ENSMUSG00000024236 Svil ENSMUST00000140448 ENSMUSP00000119803 TRANSLATION protein_coding - CCDS37720.1 5 2170.0 6.0 5.648 0.1 87.6 0.0 -4,-6 1.0 60 14.0 PRINCIPAL:2 ENSMUSG00000024236 Svil ENSMUST00000131210 - NO_TRANSLATION retained_intron ENSMUSG00000024236 Svil ENSMUST00000125512 ENSMUSP00000121972 TRANSLATION nonsense_mediated_decay start - 5 749.0 5.0 1.503 0.0 30.3 0.0 -4,-5 0.0076 22 -2.0 MINOR ENSMUSG00000024236 Svil ENSMUST00000210707 ENSMUSP00000147843 TRANSLATION protein_coding - - 5 2257.0 6.0 5.648 0.3 87.6 0.0 -4,-2 0.3667 60 14.0 ALTERNATIVE:2 ENSMUSG00000024236 Svil ENSMUST00000148564 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024236 Svil ENSMUST00000146723 ENSMUSP00000115591 TRANSLATION protein_coding start/stop - 3 169.0 0.0 1.095 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024236 Svil ENSMUST00000025079 ENSMUSP00000025079 TRANSLATION protein_coding - CCDS37720.1 1 2170.0 6.0 5.648 0.1 87.6 0.0 -4,-6 1.0 60 14.0 PRINCIPAL:2 ENSMUSG00000024236 Svil ENSMUST00000153016 ENSMUSP00000121497 TRANSLATION protein_coding stop - 2 40.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0008 2 -2.0 MINOR ENSMUSG00000024236 Svil ENSMUST00000138258 - NO_TRANSLATION retained_intron ENSMUSG00000024236 Svil ENSMUST00000126977 ENSMUSP00000115078 TRANSLATION protein_coding - CCDS37720.1 5 2170.0 6.0 5.648 0.1 87.6 0.0 -4,-6 1.0 60 14.0 PRINCIPAL:2 ENSMUSG00000024236 Svil ENSMUST00000127297 ENSMUSP00000115223 TRANSLATION protein_coding - - 5 2056.0 6.0 5.648 0.0 87.6 0.0 -4,-6 0.325 59 14.0 ALTERNATIVE:2 ENSMUSG00000102742 Pcdhga11 ENSMUST00000061279 ENSMUSP00000058362 TRANSLATION protein_coding - CCDS37784.1 1 933.0 50.0 0.8 0.0 525.7 0.0 -1,-5 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000024600 Slc27a6 ENSMUST00000025500 ENSMUSP00000025500 TRANSLATION protein_coding - CCDS37828.1 1 619.0 21.0 6.946 14.0 260.7 0.0 -2,-4 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000044176 Spink10 ENSMUST00000087562 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044176 Spink10 ENSMUST00000162511 ENSMUSP00000125330 TRANSLATION protein_coding - - 1 88.0 0.0 1.832 0.0 64.5 2.0 2,-3 0.0033 1 7.23 MINOR ENSMUSG00000044176 Spink10 ENSMUST00000163259 ENSMUSP00000128279 TRANSLATION protein_coding stop - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044176 Spink10 ENSMUST00000055725 ENSMUSP00000062976 TRANSLATION protein_coding - CCDS29293.1 1 162.0 0.0 3.13 0.4 100.7 4.0 0,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000044176 Spink10 ENSMUST00000162365 ENSMUSP00000125171 TRANSLATION protein_coding - - 1 146.0 0.0 1.73 0.0 36.2 4.0 0,-4 0.0066 - 5.328 MINOR ENSMUSG00000044176 Spink10 ENSMUST00000160316 ENSMUSP00000158416 TRANSLATION protein_coding stop - 5 107.0 0.0 1.73 0.0 37.2 4.0 0,-3 0.0056 - -2.0 MINOR ENSMUSG00000044176 Spink10 ENSMUST00000161674 ENSMUSP00000157841 TRANSLATION protein_coding stop - 5 51.0 0.0 0.198 0.0 0.0 2.0 0,-3 0.0026 - -2.0 MINOR ENSMUSG00000024528 Srfbp1 ENSMUST00000237434 - NO_TRANSLATION retained_intron ENSMUSG00000024528 Srfbp1 ENSMUST00000237092 - NO_TRANSLATION retained_intron ENSMUSG00000024528 Srfbp1 ENSMUST00000025406 ENSMUSP00000025406 TRANSLATION protein_coding - CCDS37819.1 1 441.0 0.0 3.25 0.4 42.9 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000024528 Srfbp1 ENSMUST00000237229 ENSMUSP00000158232 TRANSLATION nonsense_mediated_decay - - - 77.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024528 Srfbp1 ENSMUST00000238100 - NO_TRANSLATION retained_intron ENSMUSG00000024528 Srfbp1 ENSMUST00000235538 - NO_TRANSLATION retained_intron ENSMUSG00000024378 Stard4 ENSMUST00000025236 ENSMUSP00000025236 TRANSLATION protein_coding - CCDS29123.1 1 224.0 0.0 4.5 0.1 66.5 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000024378 Stard4 ENSMUST00000118990 ENSMUSP00000114131 TRANSLATION protein_coding - - 2 111.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0 3 1.998 MINOR ENSMUSG00000024378 Stard4 ENSMUST00000141617 - NO_TRANSLATION retained_intron ENSMUSG00000024378 Stard4 ENSMUST00000119991 ENSMUSP00000114109 TRANSLATION protein_coding - CCDS84369.1 5 146.0 0.0 2.5 0.0 0.0 0.0 -4,-5 0.0063 3 1.998 MINOR ENSMUSG00000090523 Gypc ENSMUST00000174000 ENSMUSP00000133874 TRANSLATION protein_coding - CCDS84368.1 3 78.0 0.0 0.8 0.0 0.0 1.0 -3,-5 0.1107 - 4.248 MINOR ENSMUSG00000090523 Gypc ENSMUST00000172434 ENSMUSP00000128514 TRANSLATION protein_coding - - 5 72.0 0.0 1.13 0.0 0.0 2.0 -1,-5 0.1185 - 6.0 ALTERNATIVE:2 ENSMUSG00000090523 Gypc ENSMUST00000174459 ENSMUSP00000134317 TRANSLATION protein_coding - CCDS57118.1 1 95.0 0.0 1.13 1.8 0.0 2.0 -4,-7 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000041225 Arhgap12 ENSMUST00000182921 ENSMUSP00000138798 TRANSLATION protein_coding start/stop - 3 146.0 2.0 1.35 0.0 107.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000041225 Arhgap12 ENSMUST00000077128 ENSMUSP00000076376 TRANSLATION protein_coding - CCDS37722.1 1 813.0 5.0 9.59 15.8 525.1 0.0 -4,-5 0.9615 15 16.384 ALTERNATIVE:1 ENSMUSG00000041225 Arhgap12 ENSMUST00000182572 - NO_TRANSLATION retained_intron ENSMUSG00000041225 Arhgap12 ENSMUST00000182559 ENSMUSP00000138585 TRANSLATION protein_coding - CCDS37723.1 1 838.0 5.0 9.59 18.5 525.1 0.0 -4,-5 1.0 17 17.0 PRINCIPAL:3 ENSMUSG00000041225 Arhgap12 ENSMUST00000182101 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041225 Arhgap12 ENSMUST00000182343 - NO_TRANSLATION retained_intron ENSMUSG00000041225 Arhgap12 ENSMUST00000182383 ENSMUSP00000138444 TRANSLATION protein_coding - - 5 766.0 5.0 9.59 12.7 525.1 0.0 -4,-5 0.7212 14 15.676 MINOR ENSMUSG00000041225 Arhgap12 ENSMUST00000182066 ENSMUSP00000138496 TRANSLATION protein_coding - - 5 791.0 5.0 9.59 17.4 525.1 0.0 -4,-5 0.7899 16 16.748 ALTERNATIVE:1 ENSMUSG00000041225 Arhgap12 ENSMUST00000182038 ENSMUSP00000138150 TRANSLATION protein_coding stop - 1 394.0 0.0 0.81 0.0 313.6 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000041225 Arhgap12 ENSMUST00000182322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041225 Arhgap12 ENSMUST00000182614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041225 Arhgap12 ENSMUST00000181989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041225 Arhgap12 ENSMUST00000182213 ENSMUSP00000138464 TRANSLATION protein_coding - - 5 843.0 5.0 9.59 12.5 525.1 0.0 -4,-5 0.781 17 15.628 MINOR ENSMUSG00000041225 Arhgap12 ENSMUST00000182178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041225 Arhgap12 ENSMUST00000062584 ENSMUSP00000054209 TRANSLATION protein_coding - - 5 796.0 5.0 9.59 11.4 525.1 0.0 -4,-5 0.7138 16 15.376 MINOR ENSMUSG00000025421 Hdhd2 ENSMUST00000097522 ENSMUSP00000095129 TRANSLATION protein_coding - CCDS37863.1 1 259.0 9.0 5.5 36.9 134.6 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000025421 Hdhd2 ENSMUST00000148955 ENSMUSP00000116243 TRANSLATION protein_coding - CCDS37863.1 5 259.0 9.0 5.5 36.9 134.6 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000025421 Hdhd2 ENSMUST00000145634 ENSMUSP00000123320 TRANSLATION protein_coding - CCDS37863.1 5 259.0 9.0 5.5 36.9 134.6 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000025421 Hdhd2 ENSMUST00000097521 ENSMUSP00000095128 TRANSLATION protein_coding - CCDS37864.1 1 146.0 6.0 2.8325 0.0 69.7 0.0 -4,-7 0.0017 4 6.774 MINOR ENSMUSG00000025421 Hdhd2 ENSMUST00000150990 ENSMUSP00000114212 TRANSLATION protein_coding - CCDS37863.1 5 259.0 9.0 5.5 36.9 134.6 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000025421 Hdhd2 ENSMUST00000026485 ENSMUSP00000026485 TRANSLATION protein_coding - CCDS37863.1 1 259.0 9.0 5.5 36.9 134.6 0.0 -4,-7 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000060275 Nrg2 ENSMUST00000115713 ENSMUSP00000111378 TRANSLATION protein_coding - CCDS50255.1 5 857.0 3.0 4.125 0.0 618.9 3.0 -4,-2 0.4935 6 10.598 ALTERNATIVE:2 ENSMUSG00000060275 Nrg2 ENSMUST00000115712 ENSMUSP00000111377 TRANSLATION protein_coding start/stop - 5 210.0 0.0 1.05 0.0 349.3 3.0 -4,-7 0.0014 2 -2.0 MINOR ENSMUSG00000060275 Nrg2 ENSMUST00000225173 ENSMUSP00000157746 TRANSLATION protein_coding start/stop - - 109.0 4.0 2.32 0.0 22.1 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000060275 Nrg2 ENSMUST00000237681 ENSMUSP00000158329 TRANSLATION nonsense_mediated_decay start - - 51.0 0.0 0.8 0.0 24.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000060275 Nrg2 ENSMUST00000239409 ENSMUSP00000159288 TRANSLATION protein_coding - - - 643.0 3.0 4.325 1.0 618.9 3.0 -4,-5 0.8349 5 11.0 PRINCIPAL:2 ENSMUSG00000060275 Nrg2 ENSMUST00000115705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024646 Cyb5a ENSMUST00000235725 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024646 Cyb5a ENSMUST00000159846 - NO_TRANSLATION retained_intron ENSMUSG00000024646 Cyb5a ENSMUST00000236742 ENSMUSP00000157603 TRANSLATION nonsense_mediated_decay - - - 54.0 5.0 1.066 0.0 35.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024646 Cyb5a ENSMUST00000025549 ENSMUSP00000025549 TRANSLATION nonsense_mediated_decay - - 3 98.0 21.0 2.33 3.1 83.1 0.0 -4,-5 0.1447 6 -2.0 MINOR ENSMUSG00000024646 Cyb5a ENSMUST00000159837 - NO_TRANSLATION retained_intron ENSMUSG00000024646 Cyb5a ENSMUST00000160180 ENSMUSP00000124480 TRANSLATION protein_coding - CCDS29385.1 1 134.0 21.0 2.83 13.2 83.1 1.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000024646 Cyb5a ENSMUST00000235254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024646 Cyb5a ENSMUST00000163083 ENSMUSP00000124412 TRANSLATION protein_coding - - 3 110.0 20.0 1.91 0.0 37.4 1.0 -4,-1 0.0008 3 12.084 MINOR ENSMUSG00000036103 Colec12 ENSMUST00000040069 ENSMUSP00000043220 TRANSLATION nonsense_mediated_decay - - 1 461.0 0.0 0.0 0.0 0.0 1.0 -4,-6 0.003 10 -2.0 MINOR ENSMUSG00000036103 Colec12 ENSMUST00000234965 ENSMUSP00000157132 TRANSLATION protein_coding - CCDS37732.1 - 742.0 15.0 3.0 8.4 152.9 1.0 -4,-6 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000036103 Colec12 ENSMUST00000234149 - NO_TRANSLATION retained_intron ENSMUSG00000036103 Colec12 ENSMUST00000234026 - NO_TRANSLATION retained_intron ENSMUSG00000024346 Pfdn1 ENSMUST00000237499 ENSMUSP00000158027 TRANSLATION protein_coding start - - 104.0 0.0 2.83 0.0 46.2 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000024346 Pfdn1 ENSMUST00000025204 ENSMUSP00000025204 TRANSLATION protein_coding - CCDS29152.1 1 122.0 0.0 3.16 35.0 74.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000024346 Pfdn1 ENSMUST00000237792 ENSMUSP00000158562 TRANSLATION protein_coding - - - 87.0 0.0 1.33 0.1 32.5 0.0 -4,-5 0.0 3 4.956 MINOR ENSMUSG00000053950 Adnp2 ENSMUST00000066743 ENSMUSP00000068560 TRANSLATION protein_coding - CCDS50332.1 1 1165.0 16.0 0.0 0.7 0.0 0.0 -4,-6 0.9317 3 6.0 PRINCIPAL:1 ENSMUSG00000047910 Pcdhb16 ENSMUST00000051442 ENSMUSP00000056347 TRANSLATION protein_coding - CCDS29182.1 - 802.0 45.0 1.0 7.9 455.2 0.0 2,-4 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000024477 Pggt1b ENSMUST00000235465 ENSMUSP00000158351 TRANSLATION nonsense_mediated_decay - - - 138.0 0.0 2.15 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024477 Pggt1b ENSMUST00000236205 - NO_TRANSLATION retained_intron ENSMUSG00000024477 Pggt1b ENSMUST00000236216 ENSMUSP00000158214 TRANSLATION protein_coding - CCDS29230.1 - 377.0 14.0 10.0 13.6 132.4 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000024477 Pggt1b ENSMUST00000025354 ENSMUSP00000025354 TRANSLATION nonsense_mediated_decay - - 1 97.0 0.0 1.15 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024477 Pggt1b ENSMUST00000236527 - NO_TRANSLATION retained_intron ENSMUSG00000024477 Pggt1b ENSMUST00000236999 ENSMUSP00000157885 TRANSLATION protein_coding - - - 300.0 4.0 8.0 1.0 69.2 0.0 -4,-5 0.0102 7 4.206 MINOR ENSMUSG00000024477 Pggt1b ENSMUST00000237757 - NO_TRANSLATION retained_intron ENSMUSG00000024477 Pggt1b ENSMUST00000235979 - NO_TRANSLATION retained_intron ENSMUSG00000024477 Pggt1b ENSMUST00000236368 ENSMUSP00000158221 TRANSLATION protein_coding start - - 107.0 2.0 1.665 0.0 19.3 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000038071 Npy6r ENSMUST00000042747 ENSMUSP00000040797 TRANSLATION protein_coding - CCDS29227.1 1 371.0 0.0 0.8 4.8 170.4 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051469 Zfp24 ENSMUST00000066497 ENSMUSP00000064637 TRANSLATION protein_coding - CCDS29098.1 1 368.0 16.0 1.8 11.0 237.2 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000051469 Zfp24 ENSMUST00000153337 ENSMUSP00000122579 TRANSLATION protein_coding - CCDS29098.1 1 368.0 16.0 1.8 11.0 237.2 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000051469 Zfp24 ENSMUST00000148525 ENSMUSP00000114282 TRANSLATION protein_coding stop - 2 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000104252 Pcdha4 ENSMUST00000194235 - NO_TRANSLATION retained_intron ENSMUSG00000104252 Pcdha4 ENSMUST00000192512 ENSMUSP00000141408 TRANSLATION protein_coding - CCDS37776.1 1 947.0 55.0 2.36 6.2 544.7 0.0 0,-2 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000104252 Pcdha4 ENSMUST00000192295 ENSMUSP00000142103 TRANSLATION protein_coding - - 1 640.0 48.0 1.86 0.0 404.3 0.0 0,-2 0.0014 1 6.06 MINOR ENSMUSG00000042834 Nrep ENSMUST00000051087 ENSMUSP00000058132 TRANSLATION protein_coding - CCDS37756.1 1 68.0 0.0 0.0 9.9 118.9 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000042834 Nrep ENSMUST00000237066 ENSMUSP00000157912 TRANSLATION protein_coding - CCDS37756.1 - 68.0 0.0 0.0 9.9 118.9 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000042834 Nrep ENSMUST00000168890 ENSMUSP00000130297 TRANSLATION protein_coding - CCDS37756.1 1 68.0 0.0 0.0 9.9 118.9 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000042834 Nrep ENSMUST00000171533 ENSMUSP00000127787 TRANSLATION protein_coding - CCDS37756.1 2 68.0 0.0 0.0 9.9 118.9 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000073563 Csnk1g3 ENSMUST00000236399 ENSMUSP00000158167 TRANSLATION protein_coding start/stop - - 140.0 0.0 1.4 0.0 115.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000073563 Csnk1g3 ENSMUST00000237880 ENSMUSP00000158175 TRANSLATION protein_coding - - - 448.0 3.0 7.45 14.1 209.3 0.0 -4,-5 1.0 5 19.0 PRINCIPAL:1 ENSMUSG00000073563 Csnk1g3 ENSMUST00000069597 ENSMUSP00000070259 TRANSLATION protein_coding - CCDS37823.1 5 424.0 3.0 7.45 10.9 159.7 0.0 -4,-5 0.7116 5 15.048 MINOR ENSMUSG00000035420 Fam170a ENSMUST00000236949 ENSMUSP00000158518 TRANSLATION nonsense_mediated_decay - - - 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0204 - -2.0 MINOR ENSMUSG00000035420 Fam170a ENSMUST00000039121 ENSMUSP00000035910 TRANSLATION protein_coding - CCDS29243.1 1 333.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.843 - 3.0 PRINCIPAL:2 ENSMUSG00000035420 Fam170a ENSMUST00000238113 ENSMUSP00000158112 TRANSLATION nonsense_mediated_decay - - - 57.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0204 - -2.0 MINOR ENSMUSG00000035420 Fam170a ENSMUST00000238078 ENSMUSP00000158194 TRANSLATION protein_coding - - - 370.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.0574 - 3.0 ALTERNATIVE:2 ENSMUSG00000049357 Brd8dc ENSMUST00000129566 ENSMUSP00000117272 TRANSLATION nonsense_mediated_decay - - 2 218.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000049357 Brd8dc ENSMUST00000056932 ENSMUSP00000054234 TRANSLATION protein_coding - CCDS37758.1 1 273.0 0.0 3.25 0.0 77.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042680 Garem1 ENSMUST00000049260 ENSMUSP00000048914 TRANSLATION protein_coding - CCDS29091.1 1 876.0 0.0 0.4 12.0 268.9 0.0 -4,-6 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000042680 Garem1 ENSMUST00000234115 ENSMUSP00000157254 TRANSLATION protein_coding - - - 578.0 0.0 0.0 0.0 268.9 0.0 -4,-6 0.0504 8 6.0 MINOR ENSMUSG00000024505 Dtwd2 ENSMUST00000025383 ENSMUSP00000025383 TRANSLATION protein_coding - CCDS50286.1 1 202.0 0.0 3.0 0.0 38.2 0.0 -4,-5 0.002 - 1.998 MINOR ENSMUSG00000024505 Dtwd2 ENSMUST00000139852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024505 Dtwd2 ENSMUST00000237137 ENSMUSP00000157640 TRANSLATION nonsense_mediated_decay - - - 137.0 0.0 2.0 0.0 48.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024505 Dtwd2 ENSMUST00000163590 ENSMUSP00000128219 TRANSLATION protein_coding - CCDS37815.1 1 298.0 0.0 5.0 7.5 148.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000046727 Cystm1 ENSMUST00000235403 ENSMUSP00000157550 TRANSLATION protein_coding - - - 104.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.6195 2 1.0 PRINCIPAL:3 ENSMUSG00000046727 Cystm1 ENSMUST00000152804 ENSMUSP00000129683 TRANSLATION protein_coding - CCDS37770.1 3 106.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.5863 1 1.0 ALTERNATIVE:2 ENSMUSG00000046727 Cystm1 ENSMUST00000235576 ENSMUSP00000158229 TRANSLATION nonsense_mediated_decay - - - 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0247 - -2.0 MINOR ENSMUSG00000046727 Cystm1 ENSMUST00000236593 ENSMUSP00000158346 TRANSLATION protein_coding - CCDS37770.1 - 106.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.5863 1 1.0 ALTERNATIVE:2 ENSMUSG00000046727 Cystm1 ENSMUST00000144158 ENSMUSP00000114199 TRANSLATION protein_coding stop - 3 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0265 2 -2.0 MINOR ENSMUSG00000046727 Cystm1 ENSMUST00000237375 ENSMUSP00000158042 TRANSLATION protein_coding - - - 104.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.6195 2 1.0 PRINCIPAL:3 ENSMUSG00000046727 Cystm1 ENSMUST00000237329 ENSMUSP00000157821 TRANSLATION nonsense_mediated_decay - - - 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0247 - -2.0 MINOR ENSMUSG00000046727 Cystm1 ENSMUST00000145439 - NO_TRANSLATION retained_intron ENSMUSG00000046727 Cystm1 ENSMUST00000050584 ENSMUSP00000051708 TRANSLATION protein_coding - - 1 104.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.6195 2 1.0 PRINCIPAL:3 ENSMUSG00000046727 Cystm1 ENSMUST00000236374 ENSMUSP00000157423 TRANSLATION protein_coding - - - 104.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.6195 2 1.0 PRINCIPAL:3 ENSMUSG00000046727 Cystm1 ENSMUST00000139727 ENSMUSP00000115138 TRANSLATION protein_coding - CCDS37770.1 5 106.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.5863 1 1.0 ALTERNATIVE:2 ENSMUSG00000046727 Cystm1 ENSMUST00000236024 ENSMUSP00000158471 TRANSLATION nonsense_mediated_decay - - - 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0247 - -2.0 MINOR ENSMUSG00000046727 Cystm1 ENSMUST00000235864 ENSMUSP00000158380 TRANSLATION protein_coding - - - 104.0 0.0 0.0 1.5 0.0 0.0 -4,-5 0.6195 2 1.0 PRINCIPAL:3 ENSMUSG00000102697 Pcdhac2 ENSMUST00000047479 ENSMUSP00000039888 TRANSLATION protein_coding - CCDS29168.1 1 1006.0 47.0 0.6 7.3 645.2 0.0 -1,-2 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000110185 Igip ENSMUST00000210490 ENSMUSP00000147405 TRANSLATION protein_coding - CCDS84375.1 - 53.0 0.0 0.0 6.0 0.0 0.0 -3,-6 1.0 - 2.0 PRINCIPAL:1 ENSMUSG00000024313 Mep1b ENSMUST00000234367 ENSMUSP00000156977 TRANSLATION protein_coding stop - - 128.0 1.0 2.75 0.0 35.5 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000024313 Mep1b ENSMUST00000082235 ENSMUSP00000080866 TRANSLATION protein_coding - CCDS37747.1 1 704.0 11.0 9.35 5.4 385.3 0.0 2,-3 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000024313 Mep1b ENSMUST00000235102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057719 Sh3rf2 ENSMUST00000074679 ENSMUSP00000074247 TRANSLATION protein_coding - CCDS29210.1 1 703.0 8.0 2.36 0.0 122.1 0.0 -4,-7 0.0642 6 14.148 MINOR ENSMUSG00000057719 Sh3rf2 ENSMUST00000237344 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057719 Sh3rf2 ENSMUST00000132681 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057719 Sh3rf2 ENSMUST00000236947 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057719 Sh3rf2 ENSMUST00000128066 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057719 Sh3rf2 ENSMUST00000072008 ENSMUSP00000071896 TRANSLATION protein_coding - CCDS50265.1 1 735.0 8.0 3.36 1.1 153.0 0.0 -4,-7 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000059852 Kcng2 ENSMUST00000184574 ENSMUSP00000139072 TRANSLATION protein_coding stop - 3 152.0 3.0 0.8 0.0 78.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000059852 Kcng2 ENSMUST00000077962 ENSMUSP00000077112 TRANSLATION protein_coding - CCDS57127.1 5 480.0 3.0 1.8 0.4 202.9 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059852 Kcng2 ENSMUST00000184366 ENSMUSP00000138920 TRANSLATION protein_coding stop - 5 64.0 0.0 0.32 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024240 Epc1 ENSMUST00000115870 ENSMUSP00000111536 TRANSLATION protein_coding - CCDS37726.1 1 763.0 0.0 0.2 5.7 345.1 0.0 -4,-5 0.4319 10 10.42 MINOR ENSMUSG00000024240 Epc1 ENSMUST00000028100 ENSMUSP00000028100 TRANSLATION protein_coding - CCDS29041.1 1 813.0 0.0 0.2 20.0 387.9 0.0 -4,-7 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000024240 Epc1 ENSMUST00000050542 ENSMUSP00000060599 TRANSLATION protein_coding - CCDS70868.1 1 61.0 0.0 0.0 0.7 0.0 0.0 -4,-2 0.0304 1 0.0 MINOR ENSMUSG00000024240 Epc1 ENSMUST00000124926 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042211 Fbxo38 ENSMUST00000048688 ENSMUSP00000047541 TRANSLATION protein_coding - CCDS37841.1 1 1194.0 0.0 0.0 9.9 23.1 0.0 -4,-5 1.0 16 9.0 PRINCIPAL:1 ENSMUSG00000042211 Fbxo38 ENSMUST00000236904 - NO_TRANSLATION retained_intron ENSMUSG00000042211 Fbxo38 ENSMUST00000235807 ENSMUSP00000158310 TRANSLATION protein_coding stop - - 179.0 0.0 0.0 0.0 23.1 0.0 -4,-5 0.0219 2 -2.0 MINOR ENSMUSG00000042211 Fbxo38 ENSMUST00000237378 - NO_TRANSLATION retained_intron ENSMUSG00000103092 Pcdha5 ENSMUST00000192168 ENSMUSP00000142293 TRANSLATION protein_coding - CCDS79617.1 1 934.0 52.0 1.0 3.7 539.6 0.0 2,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000042439 Zfp532 ENSMUST00000237756 ENSMUSP00000157850 TRANSLATION nonsense_mediated_decay start - - 75.0 3.0 0.2 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000182979 ENSMUSP00000138225 TRANSLATION protein_coding stop - 1 779.0 10.0 0.2 0.0 0.0 0.0 -4,-5 0.0089 11 -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000237886 ENSMUSP00000158433 TRANSLATION protein_coding stop - - 160.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000183319 ENSMUSP00000138199 TRANSLATION protein_coding stop - 3 28.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000183236 ENSMUSP00000138783 TRANSLATION protein_coding stop - 3 174.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000237714 ENSMUSP00000158253 TRANSLATION protein_coding - - - 1304.0 50.0 3.59 2.4 85.2 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000042439 Zfp532 ENSMUST00000182684 ENSMUSP00000138604 TRANSLATION protein_coding stop - 3 219.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000235669 ENSMUSP00000158241 TRANSLATION protein_coding stop - - 124.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000236694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042439 Zfp532 ENSMUST00000183184 - NO_TRANSLATION retained_intron ENSMUSG00000042439 Zfp532 ENSMUST00000182655 ENSMUSP00000138196 TRANSLATION protein_coding stop - 3 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000235822 ENSMUSP00000157961 TRANSLATION protein_coding - - - 1304.0 50.0 3.59 2.4 85.2 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000042439 Zfp532 ENSMUST00000236523 ENSMUSP00000158484 TRANSLATION protein_coding stop - - 82.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000237553 ENSMUSP00000157481 TRANSLATION protein_coding - - - 1304.0 50.0 3.59 2.4 85.2 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000042439 Zfp532 ENSMUST00000235493 ENSMUSP00000157486 TRANSLATION protein_coding - - - 1304.0 50.0 3.59 2.4 85.2 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000042439 Zfp532 ENSMUST00000182319 ENSMUSP00000138371 TRANSLATION protein_coding stop - 5 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000182973 ENSMUSP00000138303 TRANSLATION protein_coding stop - 3 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000237931 ENSMUSP00000158172 TRANSLATION protein_coding stop - - 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000237712 ENSMUSP00000158009 TRANSLATION protein_coding stop - - 230.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 2 -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000169679 ENSMUSP00000129390 TRANSLATION protein_coding - CCDS29307.1 5 1036.0 27.0 1.36 2.4 85.2 0.0 -4,-5 0.5874 11 8.542 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000049016 ENSMUSP00000036582 TRANSLATION protein_coding - CCDS29307.1 1 1036.0 27.0 1.36 2.4 85.2 0.0 -4,-5 0.5874 11 8.542 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000183326 ENSMUSP00000138155 TRANSLATION protein_coding stop - 2 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000182852 ENSMUSP00000138663 TRANSLATION protein_coding - - 5 1304.0 50.0 3.59 2.4 85.2 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000042439 Zfp532 ENSMUST00000183303 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042439 Zfp532 ENSMUST00000182478 ENSMUSP00000138315 TRANSLATION nonsense_mediated_decay - - 2 900.0 22.0 1.63 0.0 0.0 0.0 -4,-5 0.0105 12 -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000182140 ENSMUSP00000138704 TRANSLATION protein_coding stop - 3 170.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042439 Zfp532 ENSMUST00000236633 ENSMUSP00000158515 TRANSLATION protein_coding stop - - 73.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071855 Ccdc112 ENSMUST00000072835 ENSMUSP00000072614 TRANSLATION protein_coding - CCDS50281.1 5 525.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.9776 - 0.0 PRINCIPAL:1 ENSMUSG00000071855 Ccdc112 ENSMUST00000236934 ENSMUSP00000158298 TRANSLATION protein_coding start/stop - - 214.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0347 - -2.0 MINOR ENSMUSG00000071855 Ccdc112 ENSMUST00000238189 ENSMUSP00000158529 TRANSLATION protein_coding start - - 220.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0364 - -2.0 MINOR ENSMUSG00000071855 Ccdc112 ENSMUST00000237152 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071855 Ccdc112 ENSMUST00000235609 - NO_TRANSLATION retained_intron ENSMUSG00000024556 Me2 ENSMUST00000237619 - NO_TRANSLATION retained_intron ENSMUSG00000024556 Me2 ENSMUST00000236922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024556 Me2 ENSMUST00000025439 ENSMUSP00000025439 TRANSLATION protein_coding - CCDS29339.1 1 589.0 20.0 14.3 0.9 582.8 0.0 -4,-1 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000024556 Me2 ENSMUST00000235595 - NO_TRANSLATION retained_intron ENSMUSG00000033628 Pik3c3 ENSMUST00000131405 ENSMUSP00000128927 TRANSLATION nonsense_mediated_decay - - 1 513.0 0.0 6.535 0.0 341.8 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000033628 Pik3c3 ENSMUST00000115812 ENSMUSP00000111479 TRANSLATION protein_coding - CCDS37752.1 1 887.0 0.0 16.435 20.3 489.9 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000033628 Pik3c3 ENSMUST00000091978 ENSMUSP00000089601 TRANSLATION protein_coding - - 1 848.0 0.0 15.435 0.0 489.9 0.0 -4,-5 0.0505 15 10.002 MINOR ENSMUSG00000033628 Pik3c3 ENSMUST00000115811 ENSMUSP00000111478 TRANSLATION protein_coding - - 1 756.0 0.0 13.435 1.0 452.4 0.0 -4,-5 0.019 14 3.75 MINOR ENSMUSG00000025427 Ark2c ENSMUST00000182146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025427 Ark2c ENSMUST00000182153 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025427 Ark2c ENSMUST00000182294 - NO_TRANSLATION retained_intron ENSMUSG00000025427 Ark2c ENSMUST00000182024 ENSMUSP00000138494 TRANSLATION protein_coding - - 5 154.0 8.0 3.3 3.3 53.9 0.0 -4,-2 0.2278 - 18.657 MINOR ENSMUSG00000025427 Ark2c ENSMUST00000182805 - NO_TRANSLATION retained_intron ENSMUSG00000025427 Ark2c ENSMUST00000182348 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025427 Ark2c ENSMUST00000026494 ENSMUSP00000026494 TRANSLATION protein_coding - CCDS50327.1 5 347.0 8.0 3.3 11.5 53.9 0.0 -4,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000048347 Pcdhb18 ENSMUST00000055949 ENSMUSP00000052113 TRANSLATION protein_coding - CCDS29184.1 - 792.0 52.0 1.0 0.4 445.6 0.0 2,-4 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000033184 Tmed7 ENSMUST00000143178 - NO_TRANSLATION retained_intron ENSMUSG00000033184 Tmed7 ENSMUST00000036030 ENSMUSP00000043660 TRANSLATION protein_coding - - 5 188.0 0.0 1.3 1.0 133.4 0.0 2,-2 0.0112 6 8.13 MINOR ENSMUSG00000033184 Tmed7 ENSMUST00000151189 ENSMUSP00000120904 TRANSLATION protein_coding - CCDS50283.1 1 224.0 0.0 1.8 8.3 170.1 0.0 2,-2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000037058 Paip2 ENSMUST00000236414 ENSMUSP00000158248 TRANSLATION protein_coding - CCDS29143.1 - 124.0 0.0 1.6 26.7 29.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037058 Paip2 ENSMUST00000236020 ENSMUSP00000157742 TRANSLATION protein_coding - CCDS29143.1 - 124.0 0.0 1.6 26.7 29.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037058 Paip2 ENSMUST00000236868 ENSMUSP00000157456 TRANSLATION protein_coding - CCDS29143.1 - 124.0 0.0 1.6 26.7 29.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037058 Paip2 ENSMUST00000235476 ENSMUSP00000158496 TRANSLATION protein_coding - CCDS29143.1 - 124.0 0.0 1.6 26.7 29.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037058 Paip2 ENSMUST00000041314 ENSMUSP00000036021 TRANSLATION protein_coding - CCDS29143.1 1 124.0 0.0 1.6 26.7 29.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037058 Paip2 ENSMUST00000238138 - NO_TRANSLATION retained_intron ENSMUSG00000037058 Paip2 ENSMUST00000237730 - NO_TRANSLATION retained_intron ENSMUSG00000037058 Paip2 ENSMUST00000236666 ENSMUSP00000158160 TRANSLATION protein_coding - CCDS29143.1 - 124.0 0.0 1.6 26.7 29.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037058 Paip2 ENSMUST00000235210 ENSMUSP00000157936 TRANSLATION protein_coding - CCDS29143.1 - 124.0 0.0 1.6 26.7 29.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037058 Paip2 ENSMUST00000235400 ENSMUSP00000157519 TRANSLATION protein_coding - CCDS29143.1 - 124.0 0.0 1.6 26.7 29.6 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037058 Paip2 ENSMUST00000235211 - NO_TRANSLATION retained_intron ENSMUSG00000037253 Mex3c ENSMUST00000091852 ENSMUSP00000089463 TRANSLATION protein_coding - CCDS50318.1 1 652.0 8.0 0.2 0.0 133.2 0.0 -1,-2 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000024598 Fbn2 ENSMUST00000235417 - NO_TRANSLATION retained_intron ENSMUSG00000024598 Fbn2 ENSMUST00000235281 - NO_TRANSLATION retained_intron ENSMUSG00000024598 Fbn2 ENSMUST00000237293 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024598 Fbn2 ENSMUST00000235779 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024598 Fbn2 ENSMUST00000236932 - NO_TRANSLATION retained_intron ENSMUSG00000024598 Fbn2 ENSMUST00000025497 ENSMUSP00000025497 TRANSLATION protein_coding - CCDS37827.1 5 2907.0 90.0 43.339 1.3 1796.9 0.0 2,-1 1.0 29 19.0 PRINCIPAL:1 ENSMUSG00000024431 Nr3c1 ENSMUST00000150483 ENSMUSP00000119432 TRANSLATION protein_coding stop - 3 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024431 Nr3c1 ENSMUST00000124115 ENSMUSP00000119630 TRANSLATION protein_coding stop - 3 129.0 0.0 0.0 0.0 105.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024431 Nr3c1 ENSMUST00000115571 ENSMUSP00000111233 TRANSLATION protein_coding - CCDS37791.1 1 792.0 28.0 7.25 0.1 776.2 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:4 ENSMUSG00000024431 Nr3c1 ENSMUST00000025300 ENSMUSP00000025300 TRANSLATION protein_coding - CCDS37791.1 1 792.0 28.0 7.25 0.1 776.2 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:4 ENSMUSG00000024431 Nr3c1 ENSMUST00000237944 ENSMUSP00000157832 TRANSLATION protein_coding stop - - 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024431 Nr3c1 ENSMUST00000131885 ENSMUSP00000121144 TRANSLATION protein_coding stop - 2 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024431 Nr3c1 ENSMUST00000115567 ENSMUSP00000111229 TRANSLATION protein_coding - CCDS37791.1 1 792.0 28.0 7.25 0.1 776.2 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:4 ENSMUSG00000024431 Nr3c1 ENSMUST00000152853 ENSMUSP00000120082 TRANSLATION protein_coding stop - 1 488.0 6.0 1.75 0.0 644.3 0.0 -4,-5 0.0216 12 -2.0 MINOR ENSMUSG00000024431 Nr3c1 ENSMUST00000097592 ENSMUSP00000095199 TRANSLATION protein_coding - - 1 793.0 28.0 7.25 0.1 772.8 0.0 -4,-5 0.7543 21 14.0 ALTERNATIVE:2 ENSMUSG00000053729 Spinkl ENSMUST00000237958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053729 Spinkl ENSMUST00000066328 ENSMUSP00000063376 TRANSLATION protein_coding - CCDS50273.1 1 90.0 0.0 1.65 0.0 28.9 0.0 3,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000117679 Apbb3 ENSMUST00000237073 - NO_TRANSLATION retained_intron ENSMUSG00000117679 Apbb3 ENSMUST00000001415 ENSMUSP00000001415 TRANSLATION protein_coding - CCDS29157.1 5 486.0 0.0 7.214 11.4 154.8 0.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000117679 Apbb3 ENSMUST00000237972 - NO_TRANSLATION retained_intron ENSMUSG00000117679 Apbb3 ENSMUST00000237679 ENSMUSP00000157608 TRANSLATION protein_coding start/stop - - 63.0 0.0 1.394 0.0 37.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000117679 Apbb3 ENSMUST00000238112 - NO_TRANSLATION retained_intron ENSMUSG00000117679 Apbb3 ENSMUST00000235552 - NO_TRANSLATION retained_intron ENSMUSG00000117679 Apbb3 ENSMUST00000237795 - NO_TRANSLATION retained_intron ENSMUSG00000117679 Apbb3 ENSMUST00000238072 ENSMUSP00000157386 TRANSLATION protein_coding start/stop - - 57.0 0.0 0.4 0.0 0.0 0.0 -2,-4 0.0 1 -2.0 MINOR ENSMUSG00000117679 Apbb3 ENSMUST00000237354 - NO_TRANSLATION retained_intron ENSMUSG00000117679 Apbb3 ENSMUST00000235798 - NO_TRANSLATION retained_intron ENSMUSG00000117679 Apbb3 ENSMUST00000237965 ENSMUSP00000158188 TRANSLATION nonsense_mediated_decay - - - 123.0 0.0 1.0 0.0 28.3 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000117679 Apbb3 ENSMUST00000236001 - NO_TRANSLATION retained_intron ENSMUSG00000024442 Dele1 ENSMUST00000236994 - NO_TRANSLATION retained_intron ENSMUSG00000024442 Dele1 ENSMUST00000235762 - NO_TRANSLATION retained_intron ENSMUSG00000024442 Dele1 ENSMUST00000236927 - NO_TRANSLATION retained_intron ENSMUSG00000024442 Dele1 ENSMUST00000236841 - NO_TRANSLATION retained_intron ENSMUSG00000024442 Dele1 ENSMUST00000235904 ENSMUSP00000157678 TRANSLATION nonsense_mediated_decay - CCDS50260.1 - 510.0 0.0 5.1 0.8 87.3 0.0 -4,0 1.0 - -2.0 MINOR ENSMUSG00000024442 Dele1 ENSMUST00000236078 ENSMUSP00000158081 TRANSLATION protein_coding - - - 312.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0033 - 0.0 MINOR ENSMUSG00000024442 Dele1 ENSMUST00000025314 ENSMUSP00000025314 TRANSLATION protein_coding - CCDS50260.1 1 510.0 0.0 5.1 0.8 87.3 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000117874 Gm50318 ENSMUST00000235292 ENSMUSP00000157573 TRANSLATION nonsense_mediated_decay,RT - - - 138.0 0.0 3.3 0.0 175.4 0.0 -4,-6 0.7445 - -2.0 PRINCIPAL:1 ENSMUSG00000050875 Minar2 ENSMUST00000175897 ENSMUSP00000135020 TRANSLATION protein_coding start/stop - 3 146.0 0.0 0.0 0.0 93.6 0.0 -4,0 0.0009 1 -2.0 MINOR ENSMUSG00000050875 Minar2 ENSMUST00000117064 ENSMUSP00000113487 TRANSLATION nonsense_mediated_decay - - 1 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000050875 Minar2 ENSMUST00000154125 - NO_TRANSLATION retained_intron ENSMUSG00000050875 Minar2 ENSMUST00000175830 ENSMUSP00000135330 TRANSLATION protein_coding - - 5 151.0 0.0 0.0 0.0 126.4 1.0 -4,-5 0.0185 1 5.634 MINOR ENSMUSG00000050875 Minar2 ENSMUST00000118510 ENSMUSP00000113023 TRANSLATION protein_coding - - 2 151.0 0.0 0.0 0.0 126.4 1.0 -4,-5 0.0185 1 5.634 MINOR ENSMUSG00000050875 Minar2 ENSMUST00000165666 ENSMUSP00000125952 TRANSLATION protein_coding - CCDS29267.2 2 193.0 0.0 0.0 3.1 132.5 1.0 -4,-5 1.0 1 7.0 PRINCIPAL:1 ENSMUSG00000050875 Minar2 ENSMUST00000058633 ENSMUSP00000056379 TRANSLATION protein_coding - - 1 151.0 0.0 0.0 0.0 126.4 1.0 -4,-5 0.0185 1 5.634 MINOR ENSMUSG00000104063 Pcdhgb7 ENSMUST00000194928 ENSMUSP00000141997 TRANSLATION protein_coding - CCDS79633.1 1 929.0 53.0 1.0 0.0 514.8 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000058925 Ccdc192 ENSMUST00000079738 ENSMUSP00000078674 TRANSLATION protein_coding - - 1 253.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5841 - 0.0 PRINCIPAL:2 ENSMUSG00000058925 Ccdc192 ENSMUST00000135806 ENSMUSP00000115752 TRANSLATION protein_coding - - 1 157.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0302 - 0.0 ALTERNATIVE:2 ENSMUSG00000058925 Ccdc192 ENSMUST00000127130 ENSMUSP00000117563 TRANSLATION protein_coding - - 1 76.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0286 - 0.0 ALTERNATIVE:2 ENSMUSG00000058925 Ccdc192 ENSMUST00000123872 ENSMUSP00000114519 TRANSLATION protein_coding start - 3 254.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.2364 - -2.0 MINOR ENSMUSG00000041258 Zfp236 ENSMUST00000183324 ENSMUSP00000138434 TRANSLATION nonsense_mediated_decay start - 1 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041258 Zfp236 ENSMUST00000225002 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041258 Zfp236 ENSMUST00000171071 ENSMUSP00000130004 TRANSLATION protein_coding - CCDS50337.1 1 1799.0 115.0 10.96 0.0 413.5 0.0 -4,-5 0.3468 1 13.23 MINOR ENSMUSG00000041258 Zfp236 ENSMUST00000182866 ENSMUSP00000138344 TRANSLATION protein_coding stop - 3 429.0 35.0 4.3 0.0 149.4 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000041258 Zfp236 ENSMUST00000182122 ENSMUSP00000138557 TRANSLATION protein_coding - - 1 1847.0 119.0 11.46 2.4 431.9 0.0 -4,-5 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000041258 Zfp236 ENSMUST00000183048 ENSMUSP00000138179 TRANSLATION nonsense_mediated_decay - - 1 485.0 35.0 5.32 0.0 149.4 0.0 -4,-5 0.0012 - -2.0 MINOR ENSMUSG00000041258 Zfp236 ENSMUST00000182759 - NO_TRANSLATION retained_intron ENSMUSG00000061802 Odad2 ENSMUST00000235068 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061802 Odad2 ENSMUST00000234788 ENSMUSP00000157197 TRANSLATION protein_coding - CCDS37729.1 - 1037.0 0.0 9.2 1.9 50.5 0.0 -4,-6 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000061802 Odad2 ENSMUST00000081275 ENSMUSP00000080028 TRANSLATION protein_coding - CCDS37729.1 5 1037.0 0.0 9.2 1.9 50.5 0.0 -4,-6 1.0 14 13.0 PRINCIPAL:1 ENSMUSG00000061802 Odad2 ENSMUST00000234196 ENSMUSP00000157290 TRANSLATION protein_coding stop - - 149.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000061802 Odad2 ENSMUST00000234281 ENSMUSP00000157131 TRANSLATION protein_coding stop - - 92.0 0.0 1.6 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000061802 Odad2 ENSMUST00000234458 - NO_TRANSLATION retained_intron ENSMUSG00000024517 Grp ENSMUST00000025395 ENSMUSP00000025395 TRANSLATION protein_coding - CCDS29310.1 1 146.0 0.0 0.0 1.4 0.0 0.0 4,-1 0.9593 1 1.0 PRINCIPAL:1 ENSMUSG00000024517 Grp ENSMUST00000173985 ENSMUSP00000133437 TRANSLATION protein_coding - CCDS29310.1 5 146.0 0.0 0.0 1.4 0.0 0.0 4,-1 0.9593 1 1.0 PRINCIPAL:1 ENSMUSG00000024517 Grp ENSMUST00000173530 - NO_TRANSLATION retained_intron ENSMUSG00000024563 Smad2 ENSMUST00000172198 ENSMUSP00000129232 TRANSLATION protein_coding stop - 5 58.0 0.0 1.0 0.0 34.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024563 Smad2 ENSMUST00000168423 ENSMUSP00000130115 TRANSLATION protein_coding - CCDS29350.1 1 467.0 4.0 5.6 36.9 413.6 0.0 -4,-5 0.8927 4 17.612 MINOR ENSMUSG00000024563 Smad2 ENSMUST00000171256 ENSMUSP00000125883 TRANSLATION protein_coding stop - 5 244.0 4.0 0.6 0.0 146.8 0.0 -4,-5 0.0001 3 -2.0 MINOR ENSMUSG00000024563 Smad2 ENSMUST00000091831 ENSMUSP00000089439 TRANSLATION protein_coding - CCDS79664.1 5 437.0 4.0 6.6 28.3 420.1 0.0 -4,-5 1.0 4 19.04 PRINCIPAL:1 ENSMUSG00000024563 Smad2 ENSMUST00000025453 ENSMUSP00000025453 TRANSLATION protein_coding - CCDS29350.1 1 467.0 4.0 5.6 36.9 413.6 0.0 -4,-5 0.8927 4 17.612 MINOR ENSMUSG00000024563 Smad2 ENSMUST00000113930 ENSMUSP00000109563 TRANSLATION protein_coding - - 5 434.0 4.0 5.6 0.0 382.2 0.0 -4,-5 0.0436 3 11.728 MINOR ENSMUSG00000024563 Smad2 ENSMUST00000165084 ENSMUSP00000132851 TRANSLATION protein_coding stop - 5 204.0 4.0 2.1 0.0 153.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000049411 Tmem241 ENSMUST00000234833 ENSMUSP00000157297 TRANSLATION nonsense_mediated_decay - - - 51.0 0.0 0.75 0.0 0.0 0.0 -1,-5 0.0056 - -2.0 MINOR ENSMUSG00000049411 Tmem241 ENSMUST00000211298 ENSMUSP00000147954 TRANSLATION nonsense_mediated_decay - - 1 188.0 0.0 5.0 0.0 0.0 7.0 -1,-5 0.0177 - -2.0 MINOR ENSMUSG00000049411 Tmem241 ENSMUST00000211480 - NO_TRANSLATION retained_intron ENSMUSG00000049411 Tmem241 ENSMUST00000210051 - NO_TRANSLATION retained_intron ENSMUSG00000049411 Tmem241 ENSMUST00000055447 ENSMUSP00000052001 TRANSLATION protein_coding - CCDS84359.1 1 282.0 0.0 8.5 0.0 0.0 13.0 -1,-5 0.1024 - 4.5 MINOR ENSMUSG00000049411 Tmem241 ENSMUST00000050228 ENSMUSP00000062148 TRANSLATION nonsense_mediated_decay - - 1 107.0 0.0 2.4 0.0 0.0 2.0 -1,-6 0.0128 - -2.0 MINOR ENSMUSG00000049411 Tmem241 ENSMUST00000209628 ENSMUSP00000148000 TRANSLATION protein_coding start - 1 153.0 0.0 5.0 0.0 0.0 8.0 0,-2 0.0555 - -2.0 MINOR ENSMUSG00000049411 Tmem241 ENSMUST00000209859 ENSMUSP00000147687 TRANSLATION protein_coding - CCDS84358.1 1 297.0 0.0 9.25 22.2 0.0 14.0 -1,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000049411 Tmem241 ENSMUST00000092075 ENSMUSP00000089709 TRANSLATION protein_coding - - 3 188.0 0.0 5.0 0.0 0.0 7.0 -1,-5 0.0177 - 0.0 MINOR ENSMUSG00000038903 Ccdc68 ENSMUST00000043929 ENSMUSP00000046197 TRANSLATION protein_coding - CCDS29330.1 1 333.0 0.0 1.5485 6.4 0.0 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:1 ENSMUSG00000038903 Ccdc68 ENSMUST00000080050 ENSMUSP00000078959 TRANSLATION protein_coding - - 5 242.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0169 2 1.938 MINOR ENSMUSG00000038903 Ccdc68 ENSMUST00000135428 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038903 Ccdc68 ENSMUST00000151773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000102206 Pcdha11 ENSMUST00000194691 - NO_TRANSLATION retained_intron ENSMUSG00000102206 Pcdha11 ENSMUST00000192447 ENSMUSP00000142270 TRANSLATION protein_coding - - 1 904.0 51.0 3.36 1.1 470.9 2.0 1,-3 0.2222 1 12.536 MINOR ENSMUSG00000102206 Pcdha11 ENSMUST00000115657 ENSMUSP00000111321 TRANSLATION protein_coding - CCDS37779.1 1 950.0 51.0 3.36 4.6 562.9 2.0 1,-3 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000102206 Pcdha11 ENSMUST00000193856 ENSMUSP00000141821 TRANSLATION protein_coding start/stop - 3 209.0 5.0 1.86 0.0 216.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000102206 Pcdha11 ENSMUST00000194050 - NO_TRANSLATION retained_intron ENSMUSG00000024553 Galr1 ENSMUST00000065224 ENSMUSP00000066381 TRANSLATION protein_coding - CCDS29372.1 1 348.0 0.0 2.75 10.9 185.9 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000056124 B4galt6 ENSMUST00000070080 ENSMUSP00000066515 TRANSLATION protein_coding - CCDS29086.1 1 382.0 3.0 4.6 32.0 272.3 0.0 -2,-6 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000102440 Pcdhga9 ENSMUST00000194814 - NO_TRANSLATION retained_intron ENSMUSG00000102440 Pcdhga9 ENSMUST00000091935 ENSMUSP00000089555 TRANSLATION protein_coding - CCDS37783.1 1 932.0 53.0 1.0 0.0 546.2 0.0 3,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000046318 Ccbe1 ENSMUST00000146610 - NO_TRANSLATION retained_intron ENSMUSG00000046318 Ccbe1 ENSMUST00000236848 ENSMUSP00000157891 TRANSLATION nonsense_mediated_decay - - - 93.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0 1 -2.0 MINOR ENSMUSG00000046318 Ccbe1 ENSMUST00000235872 ENSMUSP00000157925 TRANSLATION protein_coding start - - 114.0 0.0 0.04 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046318 Ccbe1 ENSMUST00000130300 ENSMUSP00000117636 TRANSLATION protein_coding - CCDS29314.1 1 408.0 8.0 2.14 6.9 68.1 0.0 -1,-3 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000046318 Ccbe1 ENSMUST00000061103 ENSMUSP00000052011 TRANSLATION nonsense_mediated_decay - CCDS29314.1 1 408.0 8.0 2.14 6.9 68.1 0.0 -1,-3 1.0 2 -2.0 MINOR ENSMUSG00000046318 Ccbe1 ENSMUST00000151343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046318 Ccbe1 ENSMUST00000236402 ENSMUSP00000157390 TRANSLATION protein_coding - - - 75.0 0.0 0.0 0.0 0.0 0.0 -1,-3 0.0 - 0.0 MINOR ENSMUSG00000033016 Nfatc1 ENSMUST00000078049 ENSMUSP00000077196 TRANSLATION protein_coding - CCDS37873.1 1 827.0 0.0 5.5 3.0 172.4 0.0 -4,-7 1.0 13 8.598 PRINCIPAL:2 ENSMUSG00000033016 Nfatc1 ENSMUST00000167977 ENSMUSP00000126884 TRANSLATION protein_coding - CCDS50335.1 1 925.0 0.0 5.5 1.0 172.4 0.0 -4,-5 0.4345 13 7.598 ALTERNATIVE:2 ENSMUSG00000033016 Nfatc1 ENSMUST00000170905 ENSMUSP00000129001 TRANSLATION protein_coding - CCDS50336.1 1 939.0 0.0 5.5 1.8 172.4 0.0 -4,-7 0.5546 13 7.998 ALTERNATIVE:2 ENSMUSG00000033016 Nfatc1 ENSMUST00000236711 ENSMUSP00000158358 TRANSLATION protein_coding - - - 717.0 0.0 5.7 2.1 172.4 0.0 -4,-7 0.5173 11 8.55 ALTERNATIVE:2 ENSMUSG00000033016 Nfatc1 ENSMUST00000035800 ENSMUSP00000046312 TRANSLATION protein_coding - CCDS29369.1 1 703.0 0.0 5.7 0.0 172.4 0.0 -4,-5 0.2302 11 8.0 ALTERNATIVE:2 ENSMUSG00000033016 Nfatc1 ENSMUST00000236310 ENSMUSP00000158284 TRANSLATION protein_coding - - - 813.0 0.0 5.5 0.7 172.4 0.0 -4,-5 0.2454 13 7.598 ALTERNATIVE:2 ENSMUSG00000033016 Nfatc1 ENSMUST00000237776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036743 Psma8 ENSMUST00000234869 ENSMUSP00000157105 TRANSLATION nonsense_mediated_decay - - - 53.0 0.0 1.0 0.0 57.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036743 Psma8 ENSMUST00000234922 ENSMUSP00000156989 TRANSLATION nonsense_mediated_decay - - - 63.0 0.0 1.0 0.0 57.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036743 Psma8 ENSMUST00000040860 ENSMUSP00000042590 TRANSLATION protein_coding - CCDS50226.1 1 250.0 0.0 6.75 2.3 275.2 0.0 -4,-7 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000036743 Psma8 ENSMUST00000234680 ENSMUSP00000157022 TRANSLATION protein_coding - - - 210.0 0.0 5.75 0.0 233.1 0.0 -4,-7 0.0 2 7.476 MINOR ENSMUSG00000036743 Psma8 ENSMUST00000235037 - NO_TRANSLATION retained_intron ENSMUSG00000036743 Psma8 ENSMUST00000234177 ENSMUSP00000157309 TRANSLATION nonsense_mediated_decay - - - 35.0 0.0 1.0 0.0 57.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036743 Psma8 ENSMUST00000234318 - NO_TRANSLATION retained_intron ENSMUSG00000061928 Dsg1b ENSMUST00000076737 ENSMUSP00000076026 TRANSLATION protein_coding - CCDS29081.1 1 1060.0 30.0 8.2 0.0 187.5 0.0 3,-2 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000047992 Dipk1c ENSMUST00000237920 - NO_TRANSLATION retained_intron ENSMUSG00000047992 Dipk1c ENSMUST00000161033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047992 Dipk1c ENSMUST00000052501 ENSMUSP00000057697 TRANSLATION protein_coding - CCDS29384.1 1 264.0 0.0 0.0 1.2 198.5 0.0 -4,-5 0.0471 - 2.002 MINOR ENSMUSG00000047992 Dipk1c ENSMUST00000237435 ENSMUSP00000157965 TRANSLATION nonsense_mediated_decay start - - 40.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.004 - -2.0 MINOR ENSMUSG00000047992 Dipk1c ENSMUST00000159800 ENSMUSP00000157585 TRANSLATION nonsense_mediated_decay start - 5 30.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000047992 Dipk1c ENSMUST00000235504 ENSMUSP00000158524 TRANSLATION protein_coding - CCDS29384.1 - 264.0 0.0 0.0 1.2 198.5 0.0 -4,-5 0.0471 - 2.002 MINOR ENSMUSG00000047992 Dipk1c ENSMUST00000161429 ENSMUSP00000124603 TRANSLATION protein_coding - - 2 410.0 0.0 0.0 0.1 281.8 0.0 -2,0 0.7512 - 6.0 PRINCIPAL:1 ENSMUSG00000024548 Setbp1 ENSMUST00000025430 ENSMUSP00000025430 TRANSLATION protein_coding - CCDS29362.2 5 1582.0 0.0 0.0 0.4 0.0 0.0 -4,-6 1.0 - 0.0 PRINCIPAL:1 ENSMUSG00000071862 Lrrtm2 ENSMUST00000236530 - NO_TRANSLATION retained_intron ENSMUSG00000071862 Lrrtm2 ENSMUST00000236680 ENSMUSP00000157843 TRANSLATION protein_coding - - - 268.0 0.0 0.8 0.0 38.0 1.0 -4,-5 0.0015 4 2.664 MINOR ENSMUSG00000071862 Lrrtm2 ENSMUST00000091636 ENSMUSP00000089225 TRANSLATION protein_coding - CCDS50251.1 1 515.0 0.0 1.8 19.3 150.4 1.0 0,-3 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000024290 Rock1 ENSMUST00000235067 - NO_TRANSLATION retained_intron ENSMUSG00000024290 Rock1 ENSMUST00000234463 - NO_TRANSLATION retained_intron ENSMUSG00000024290 Rock1 ENSMUST00000234926 - NO_TRANSLATION retained_intron ENSMUSG00000024290 Rock1 ENSMUST00000235075 - NO_TRANSLATION retained_intron ENSMUSG00000024290 Rock1 ENSMUST00000234734 ENSMUSP00000157140 TRANSLATION protein_coding stop - - 504.0 19.0 9.88 0.0 216.9 0.0 -4,-5 0.0006 7 -2.0 MINOR ENSMUSG00000024290 Rock1 ENSMUST00000234050 - NO_TRANSLATION retained_intron ENSMUSG00000024290 Rock1 ENSMUST00000234610 ENSMUSP00000157135 TRANSLATION nonsense_mediated_decay - - - 1089.0 19.0 11.4 0.0 298.6 0.0 -4,-5 0.1339 32 -2.0 MINOR ENSMUSG00000024290 Rock1 ENSMUST00000067947 ENSMUSP00000069549 TRANSLATION protein_coding - CCDS29053.2 5 1354.0 19.0 13.48 21.2 298.6 0.0 -4,-5 1.0 40 22.0 PRINCIPAL:1 ENSMUSG00000024544 Ldlrad4 ENSMUST00000236987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024544 Ldlrad4 ENSMUST00000063775 ENSMUSP00000068471 TRANSLATION protein_coding - CCDS29325.1 1 306.0 5.0 0.8 23.8 31.8 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000024354 Slc23a1 ENSMUST00000235744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024354 Slc23a1 ENSMUST00000237305 ENSMUSP00000158090 TRANSLATION nonsense_mediated_decay - - - 53.0 6.0 0.0 0.0 0.0 0.0 -4,-5 0.0008 - -2.0 MINOR ENSMUSG00000024354 Slc23a1 ENSMUST00000236196 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024354 Slc23a1 ENSMUST00000025212 ENSMUSP00000025212 TRANSLATION protein_coding - CCDS29144.1 1 605.0 0.0 8.25 5.9 295.3 0.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000024620 Pdgfrb ENSMUST00000025522 ENSMUSP00000025522 TRANSLATION protein_coding - CCDS50300.1 1 1099.0 20.0 8.6 2.8 430.0 1.0 4,-1 1.0 14 15.0 PRINCIPAL:2 ENSMUSG00000024620 Pdgfrb ENSMUST00000115274 ENSMUSP00000110929 TRANSLATION protein_coding - - 1 1103.0 20.0 8.6 0.7 430.0 1.0 2,-2 0.4346 14 14.0 ALTERNATIVE:2 ENSMUSG00000024370 Cdc23 ENSMUST00000135208 - NO_TRANSLATION retained_intron ENSMUSG00000024370 Cdc23 ENSMUST00000136943 - NO_TRANSLATION retained_intron ENSMUSG00000024370 Cdc23 ENSMUST00000133162 - NO_TRANSLATION retained_intron ENSMUSG00000024370 Cdc23 ENSMUST00000155307 - NO_TRANSLATION retained_intron ENSMUSG00000024370 Cdc23 ENSMUST00000133181 ENSMUSP00000122420 TRANSLATION protein_coding - CCDS29132.1 1 597.0 0.0 13.5 0.0 37.8 0.0 -2,-5 0.2922 20 8.0 ALTERNATIVE:2 ENSMUSG00000024370 Cdc23 ENSMUST00000138400 - NO_TRANSLATION retained_intron ENSMUSG00000024370 Cdc23 ENSMUST00000151409 - NO_TRANSLATION retained_intron ENSMUSG00000024370 Cdc23 ENSMUST00000025228 ENSMUSP00000025228 TRANSLATION protein_coding - - 1 571.0 0.0 13.5 0.1 37.8 0.0 -2,-5 0.7525 18 8.0 PRINCIPAL:2 ENSMUSG00000032845 Alpk2 ENSMUST00000182629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032845 Alpk2 ENSMUST00000235298 ENSMUSP00000157962 TRANSLATION protein_coding start - - 300.0 3.0 2.0 0.0 59.5 0.0 -4,-5 0.0013 1 -2.0 MINOR ENSMUSG00000032845 Alpk2 ENSMUST00000141250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032845 Alpk2 ENSMUST00000035548 ENSMUSP00000048752 TRANSLATION protein_coding - CCDS50310.1 5 2144.0 4.0 4.5 0.0 197.5 0.0 -4,-7 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000117781 Gm17266 ENSMUST00000236689 ENSMUSP00000158022 TRANSLATION protein_coding - - - 690.0 0.0 8.25 0.0 428.7 0.0 -4,-6 0.7851 - 12.0 PRINCIPAL:1 ENSMUSG00000062210 Tnfaip8 ENSMUST00000128377 ENSMUSP00000136152 TRANSLATION protein_coding stop - 2 166.0 0.0 3.5 0.0 231.2 0.0 -4,-5 0.0019 4 -2.0 MINOR ENSMUSG00000062210 Tnfaip8 ENSMUST00000145726 ENSMUSP00000136665 TRANSLATION protein_coding - - 3 100.0 0.0 2.25 0.0 135.4 0.0 -4,-6 0.0 1 1.998 MINOR ENSMUSG00000062210 Tnfaip8 ENSMUST00000124175 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062210 Tnfaip8 ENSMUST00000148159 ENSMUSP00000119041 TRANSLATION protein_coding - CCDS37817.2 1 212.0 0.0 4.25 3.4 261.4 0.0 -4,-5 0.2701 4 12.272 MINOR ENSMUSG00000062210 Tnfaip8 ENSMUST00000153873 ENSMUSP00000115396 TRANSLATION protein_coding stop - 5 114.0 0.0 2.0 0.0 115.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000062210 Tnfaip8 ENSMUST00000126666 ENSMUSP00000121372 TRANSLATION protein_coding - - 2 212.0 0.0 4.25 0.0 261.4 0.0 -4,-7 0.0255 3 12.0 MINOR ENSMUSG00000062210 Tnfaip8 ENSMUST00000134348 ENSMUSP00000119533 TRANSLATION protein_coding stop - 3 77.0 0.0 1.0 0.0 62.0 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000062210 Tnfaip8 ENSMUST00000179937 ENSMUSP00000136030 TRANSLATION protein_coding - CCDS50287.1 1 136.0 0.0 2.5 0.0 141.9 0.0 -4,-6 0.0012 2 2.502 MINOR ENSMUSG00000062210 Tnfaip8 ENSMUST00000087655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062210 Tnfaip8 ENSMUST00000148989 ENSMUSP00000120712 TRANSLATION protein_coding - CCDS50288.1 2 188.0 0.0 4.25 36.2 261.4 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000062210 Tnfaip8 ENSMUST00000155403 - NO_TRANSLATION retained_intron ENSMUSG00000062210 Tnfaip8 ENSMUST00000153545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045629 Sh3tc2 ENSMUST00000051720 ENSMUSP00000055094 TRANSLATION protein_coding - CCDS37840.1 2 1289.0 0.0 1.76 6.1 68.7 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000045629 Sh3tc2 ENSMUST00000235652 ENSMUSP00000158542 TRANSLATION nonsense_mediated_decay - - - 1001.0 0.0 0.0 0.0 54.1 0.0 -4,-5 0.0161 2 -2.0 MINOR ENSMUSG00000045629 Sh3tc2 ENSMUST00000235860 ENSMUSP00000157442 TRANSLATION protein_coding - - - 1228.0 0.0 1.76 0.0 68.7 0.0 -4,-5 0.2226 2 12.0 MINOR ENSMUSG00000045629 Sh3tc2 ENSMUST00000236759 ENSMUSP00000158088 TRANSLATION protein_coding start - - 995.0 0.0 1.76 0.0 14.6 0.0 -4,-7 0.0555 2 -2.0 MINOR ENSMUSG00000024331 Dsc2 ENSMUST00000128464 ENSMUSP00000123010 TRANSLATION nonsense_mediated_decay - - 1 131.0 0.0 0.4 0.0 61.3 0.0 1,-2 0.0009 2 -2.0 MINOR ENSMUSG00000024331 Dsc2 ENSMUST00000155407 ENSMUSP00000116063 TRANSLATION protein_coding start - 1 240.0 1.0 1.8 0.0 0.0 2.0 -4,-5 0.0013 7 -2.0 MINOR ENSMUSG00000024331 Dsc2 ENSMUST00000039247 ENSMUSP00000042905 TRANSLATION protein_coding - CCDS29077.1 1 848.0 54.0 11.2 3.9 296.3 2.0 1,-2 0.6521 24 17.188 MINOR ENSMUSG00000024331 Dsc2 ENSMUST00000075214 ENSMUSP00000074702 TRANSLATION protein_coding - CCDS84361.1 5 902.0 54.0 11.2 3.9 326.5 2.0 1,-2 1.0 27 19.0 PRINCIPAL:1 ENSMUSG00000024424 Ttc39c ENSMUST00000234966 ENSMUSP00000157144 TRANSLATION protein_coding - CCDS29065.1 - 580.0 0.0 2.95 17.4 456.8 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000024424 Ttc39c ENSMUST00000143388 - NO_TRANSLATION retained_intron ENSMUSG00000024424 Ttc39c ENSMUST00000141060 - NO_TRANSLATION retained_intron ENSMUSG00000024424 Ttc39c ENSMUST00000025294 ENSMUSP00000025294 TRANSLATION protein_coding - - 1 522.0 0.0 2.75 7.9 426.0 0.0 -4,-7 0.4137 10 11.428 MINOR ENSMUSG00000024424 Ttc39c ENSMUST00000234255 ENSMUSP00000157255 TRANSLATION protein_coding - - - 508.0 0.0 2.3 0.0 426.0 0.0 -4,-7 0.0065 9 8.832 MINOR ENSMUSG00000024424 Ttc39c ENSMUST00000169401 ENSMUSP00000133127 TRANSLATION protein_coding - - 5 522.0 0.0 2.75 7.9 426.0 0.0 -4,-7 0.4137 10 11.428 MINOR ENSMUSG00000024424 Ttc39c ENSMUST00000234974 ENSMUSP00000156993 TRANSLATION nonsense_mediated_decay - - - 202.0 0.0 0.4 0.0 192.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000024424 Ttc39c ENSMUST00000234848 - NO_TRANSLATION retained_intron ENSMUSG00000044982 Sft2d3 ENSMUST00000054984 ENSMUSP00000100656 TRANSLATION protein_coding - CCDS50243.1 - 212.0 0.0 0.0 6.1 72.8 0.0 -4,-6 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000002475 Abhd3 ENSMUST00000002549 ENSMUSP00000002549 TRANSLATION protein_coding - - 1 360.0 3.0 6.5 0.0 35.3 2.0 -4,-7 0.0215 3 5.502 MINOR ENSMUSG00000002475 Abhd3 ENSMUST00000117726 ENSMUSP00000112768 TRANSLATION protein_coding - - 1 407.0 4.0 8.25 9.7 36.1 2.0 -4,-7 0.8893 4 15.0 PRINCIPAL:1 ENSMUSG00000002475 Abhd3 ENSMUST00000234419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002475 Abhd3 ENSMUST00000144150 ENSMUSP00000116037 TRANSLATION protein_coding start/stop - 5 157.0 2.0 3.25 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000002475 Abhd3 ENSMUST00000117828 ENSMUSP00000113137 TRANSLATION protein_coding - CCDS29057.1 1 411.0 4.0 8.25 9.7 35.3 2.0 -4,-7 1.0 5 13.0 MINOR ENSMUSG00000033319 Fem1c ENSMUST00000036226 ENSMUSP00000038816 TRANSLATION protein_coding - CCDS29231.1 1 617.0 0.0 2.0 33.2 157.1 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000039529 Atp8b1 ENSMUST00000235459 ENSMUSP00000158349 TRANSLATION protein_coding start/stop - - 245.0 1.0 3.8 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000039529 Atp8b1 ENSMUST00000237686 ENSMUSP00000157875 TRANSLATION nonsense_mediated_decay - - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039529 Atp8b1 ENSMUST00000025482 ENSMUSP00000025482 TRANSLATION protein_coding - CCDS29304.1 1 1251.0 3.0 17.2505 14.0 460.6 0.0 -4,-5 1.0 18 19.0 PRINCIPAL:1 ENSMUSG00000117694 Snhg4 ENSMUST00000235585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000117694 Snhg4 ENSMUST00000237907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000117694 Snhg4 ENSMUST00000237592 ENSMUSP00000157844 TRANSLATION protein_coding,RT stop - - 403.0 0.0 4.25 0.0 29.4 0.0 -4,-5 0.7495 - -2.0 PRINCIPAL:5 ENSMUSG00000117694 Snhg4 ENSMUST00000236097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000117694 Snhg4 ENSMUST00000235176 ENSMUSP00000157406 TRANSLATION protein_coding,RT stop - - 87.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0005 - -2.0 ALTERNATIVE:2 ENSMUSG00000117694 Snhg4 ENSMUST00000235801 ENSMUSP00000157599 TRANSLATION protein_coding,RT stop - - 12.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000117694 Snhg4 ENSMUST00000237230 ENSMUSP00000157560 TRANSLATION protein_coding,RT stop - - 61.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0005 - -2.0 ALTERNATIVE:2 ENSMUSG00000117694 Snhg4 ENSMUST00000237589 ENSMUSP00000158147 TRANSLATION protein_coding,RT stop - - 102.0 0.0 1.25 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000001380 Hars1 ENSMUST00000001416 ENSMUSP00000001416 TRANSLATION protein_coding - CCDS29164.1 1 509.0 24.0 13.8 12.5 107.4 0.0 -4,-5 1.0 16 21.0 PRINCIPAL:1 ENSMUSG00000001380 Hars1 ENSMUST00000235494 ENSMUSP00000157507 TRANSLATION protein_coding start - - 138.0 10.0 1.875 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000001380 Hars1 ENSMUST00000235863 ENSMUSP00000158246 TRANSLATION nonsense_mediated_decay - - - 125.0 0.0 3.0 0.0 45.3 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001380 Hars1 ENSMUST00000236395 - NO_TRANSLATION retained_intron ENSMUSG00000001383 Zmat2 ENSMUST00000001419 ENSMUSP00000001419 TRANSLATION protein_coding - CCDS37773.1 1 199.0 4.0 1.75 30.2 29.0 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000001383 Zmat2 ENSMUST00000235399 - NO_TRANSLATION retained_intron ENSMUSG00000048875 Pudp ENSMUST00000235550 ENSMUSP00000158276 TRANSLATION nonsense_mediated_decay - CCDS29244.1 - 234.0 9.0 1.0 5.6 45.3 0.0 -4,-7 1.0 3 -2.0 MINOR ENSMUSG00000048875 Pudp ENSMUST00000056460 ENSMUSP00000057378 TRANSLATION protein_coding - CCDS29244.1 - 234.0 9.0 1.0 5.6 45.3 0.0 -4,-7 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000036904 Fzd8 ENSMUST00000041080 ENSMUSP00000039660 TRANSLATION protein_coding - CCDS29048.1 - 685.0 0.0 0.4 3.6 605.9 0.0 1,-2 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000024353 Mzb1 ENSMUST00000025211 ENSMUSP00000025211 TRANSLATION protein_coding - CCDS29145.1 1 188.0 0.0 3.6 0.1 35.2 0.0 1,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000024353 Mzb1 ENSMUST00000237462 ENSMUSP00000157781 TRANSLATION protein_coding start - - 89.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024353 Mzb1 ENSMUST00000235707 - NO_TRANSLATION retained_intron ENSMUSG00000024270 Slc39a6 ENSMUST00000152504 ENSMUSP00000120247 TRANSLATION protein_coding stop - 3 48.0 0.0 0.0 0.0 0.0 0.0 0,-4 0.0026 - -2.0 MINOR ENSMUSG00000024270 Slc39a6 ENSMUST00000070726 ENSMUSP00000064667 TRANSLATION protein_coding - CCDS50239.1 1 765.0 0.0 1.85 1.0 341.0 7.0 0,-4 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000024270 Slc39a6 ENSMUST00000128106 - NO_TRANSLATION retained_intron ENSMUSG00000024270 Slc39a6 ENSMUST00000154205 ENSMUSP00000122151 TRANSLATION protein_coding stop - 5 434.0 0.0 1.55 3.1 302.2 6.0 -4,-7 0.4125 1 -2.0 MINOR ENSMUSG00000048799 Cep120 ENSMUST00000235928 - NO_TRANSLATION retained_intron ENSMUSG00000048799 Cep120 ENSMUST00000237062 ENSMUSP00000158481 TRANSLATION protein_coding - - - 929.0 0.0 6.23 0.0 341.9 0.0 -4,-6 0.0933 13 12.0 MINOR ENSMUSG00000048799 Cep120 ENSMUST00000049811 ENSMUSP00000062433 TRANSLATION protein_coding - CCDS37822.1 1 988.0 0.0 6.23 8.5 341.9 0.0 -4,-6 1.0 14 15.0 PRINCIPAL:1 ENSMUSG00000048799 Cep120 ENSMUST00000237145 - NO_TRANSLATION retained_intron ENSMUSG00000061808 Ttr ENSMUST00000075312 ENSMUSP00000074783 TRANSLATION protein_coding - CCDS29085.1 1 147.0 3.0 3.0 22.4 71.2 0.0 3,-2 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000044252 Osbpl1a ENSMUST00000147197 ENSMUSP00000114913 TRANSLATION nonsense_mediated_decay - - 5 66.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000074352 ENSMUSP00000073957 TRANSLATION protein_coding - CCDS29067.1 1 950.0 0.0 16.815 10.7 596.3 0.0 -4,-5 1.0 20 14.622 PRINCIPAL:1 ENSMUSG00000044252 Osbpl1a ENSMUST00000117361 ENSMUSP00000112681 TRANSLATION protein_coding - CCDS57114.1 1 437.0 0.0 11.185 12.1 511.7 0.0 -4,-5 0.7201 13 3.924 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000132594 - NO_TRANSLATION retained_intron ENSMUSG00000044252 Osbpl1a ENSMUST00000234427 ENSMUSP00000157046 TRANSLATION protein_coding stop - - 200.0 0.0 4.83 0.0 310.5 0.0 -4,-6 0.0007 8 -2.0 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000234118 ENSMUSP00000157020 TRANSLATION protein_coding - - - 528.0 0.0 11.185 2.2 511.7 0.0 -4,-5 0.0751 13 1.248 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000119043 ENSMUSP00000113357 TRANSLATION protein_coding - CCDS57114.1 1 437.0 0.0 11.185 12.1 511.7 0.0 -4,-5 0.7201 13 3.924 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000141651 - NO_TRANSLATION retained_intron ENSMUSG00000044252 Osbpl1a ENSMUST00000145777 - NO_TRANSLATION retained_intron ENSMUSG00000044252 Osbpl1a ENSMUST00000119512 ENSMUSP00000113914 TRANSLATION protein_coding - CCDS57115.1 1 558.0 0.0 11.185 1.1 511.7 0.0 -4,-5 0.0751 15 0.951 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000234871 ENSMUSP00000157342 TRANSLATION protein_coding - CCDS57114.1 - 437.0 0.0 11.185 12.1 511.7 0.0 -4,-5 0.7201 13 3.924 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000118313 ENSMUSP00000113735 TRANSLATION protein_coding - CCDS57114.1 1 437.0 0.0 11.185 12.1 511.7 0.0 -4,-5 0.7201 13 3.924 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000122175 ENSMUSP00000113491 TRANSLATION protein_coding - - 1 338.0 0.0 5.63 0.0 84.6 0.0 -4,-5 0.0 4 0.0 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000142467 ENSMUSP00000157336 TRANSLATION protein_coding stop - 3 37.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000124570 ENSMUSP00000122291 TRANSLATION protein_coding stop - 2 281.0 0.0 7.285 0.0 361.1 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000121774 ENSMUSP00000113268 TRANSLATION protein_coding - - 1 410.0 0.0 10.48 0.0 511.7 0.0 -4,-6 0.0275 11 0.924 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000234194 ENSMUSP00000157017 TRANSLATION protein_coding - CCDS57114.1 - 437.0 0.0 11.185 12.1 511.7 0.0 -4,-5 0.7201 13 3.924 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000143077 ENSMUSP00000122967 TRANSLATION protein_coding stop - 3 184.0 0.0 4.205 0.0 236.7 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000155650 ENSMUSP00000120439 TRANSLATION protein_coding stop - 5 187.0 0.0 2.205 0.0 80.2 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000154614 - NO_TRANSLATION retained_intron ENSMUSG00000044252 Osbpl1a ENSMUST00000235027 ENSMUSP00000157209 TRANSLATION protein_coding - - - 547.0 0.0 11.185 0.0 511.7 0.0 -4,-5 0.0129 13 0.924 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000121808 ENSMUSP00000113841 TRANSLATION protein_coding - CCDS57114.1 1 437.0 0.0 11.185 12.1 511.7 0.0 -4,-5 0.7201 13 3.924 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000234428 ENSMUSP00000156984 TRANSLATION nonsense_mediated_decay - - - 51.0 0.0 1.205 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000044252 Osbpl1a ENSMUST00000121888 ENSMUSP00000112895 TRANSLATION protein_coding - CCDS57114.1 1 437.0 0.0 11.185 12.1 511.7 0.0 -4,-5 0.7201 13 3.924 MINOR ENSMUSG00000024487 Yipf5 ENSMUST00000025364 ENSMUSP00000025364 TRANSLATION protein_coding - CCDS29207.1 1 257.0 0.0 2.5 36.9 38.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000024487 Yipf5 ENSMUST00000236741 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024487 Yipf5 ENSMUST00000237176 - NO_TRANSLATION retained_intron ENSMUSG00000041607 Mbp ENSMUST00000091789 ENSMUSP00000089393 TRANSLATION protein_coding - CCDS29374.1 1 195.0 0.0 0.0 1.1 66.9 0.0 -4,-5 0.0831 5 0.062 MINOR ENSMUSG00000041607 Mbp ENSMUST00000142850 ENSMUSP00000115082 TRANSLATION protein_coding - CCDS29377.1 2 169.0 0.0 1.544 4.2 251.1 0.0 -4,0 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000041607 Mbp ENSMUST00000102812 ENSMUSP00000099876 TRANSLATION protein_coding - - 2 191.0 0.0 1.544 0.0 237.1 0.0 -4,0 0.0312 16 11.16 MINOR ENSMUSG00000041607 Mbp ENSMUST00000143506 ENSMUSP00000138313 TRANSLATION nonsense_mediated_decay - - 1 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041607 Mbp ENSMUST00000047865 ENSMUSP00000046185 TRANSLATION protein_coding - CCDS29373.1 1 250.0 0.0 1.28 0.1 148.6 0.0 -4,-5 0.05 11 4.974 MINOR ENSMUSG00000041607 Mbp ENSMUST00000150952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041607 Mbp ENSMUST00000153478 ENSMUSP00000114630 TRANSLATION protein_coding - CCDS37875.1 1 184.0 0.0 1.28 1.7 202.4 0.0 -4,-1 0.1359 16 8.49 MINOR ENSMUSG00000041607 Mbp ENSMUST00000075372 ENSMUSP00000074836 TRANSLATION protein_coding - - 1 117.0 0.0 1.28 0.0 151.6 0.0 -4,-1 0.0002 11 5.004 MINOR ENSMUSG00000041607 Mbp ENSMUST00000133193 ENSMUSP00000116019 TRANSLATION protein_coding - - 1 128.0 0.0 1.544 0.4 167.2 0.0 -4,-1 0.0727 11 6.966 MINOR ENSMUSG00000041607 Mbp ENSMUST00000123251 ENSMUSP00000121855 TRANSLATION protein_coding - CCDS29376.1 1 195.0 0.0 1.544 2.2 233.8 0.0 -4,-1 0.5169 17 11.712 MINOR ENSMUSG00000041607 Mbp ENSMUST00000114676 ENSMUSP00000110324 TRANSLATION protein_coding - - 1 55.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000041607 Mbp ENSMUST00000114674 ENSMUSP00000110322 TRANSLATION protein_coding - - 1 143.0 0.0 1.28 0.0 135.9 0.0 -4,-1 0.001 13 4.974 MINOR ENSMUSG00000041607 Mbp ENSMUST00000132369 ENSMUSP00000114230 TRANSLATION protein_coding - CCDS29379.1 1 158.0 0.0 1.28 1.8 220.1 0.0 -4,-1 0.318 14 9.614 MINOR ENSMUSG00000041607 Mbp ENSMUST00000062446 ENSMUSP00000053495 TRANSLATION protein_coding - - 1 176.0 0.0 1.544 0.0 134.4 0.0 -4,-1 0.0396 14 6.0 MINOR ENSMUSG00000041607 Mbp ENSMUST00000080658 ENSMUSP00000079488 TRANSLATION protein_coding - - 1 150.0 0.0 1.544 0.0 149.3 0.0 -4,0 0.0238 12 6.0 MINOR ENSMUSG00000041607 Mbp ENSMUST00000152071 ENSMUSP00000115409 TRANSLATION protein_coding - CCDS29378.1 1 154.0 0.0 1.544 0.1 152.1 0.0 -4,-1 0.1266 13 6.06 MINOR ENSMUSG00000024471 Myot ENSMUST00000025349 ENSMUSP00000025349 TRANSLATION protein_coding - CCDS29228.1 1 496.0 0.0 4.9 8.4 129.1 0.0 -4,-6 1.0 28 15.0 PRINCIPAL:1 ENSMUSG00000024471 Myot ENSMUST00000115498 ENSMUSP00000111160 TRANSLATION protein_coding - CCDS29228.1 5 496.0 0.0 4.9 8.4 129.1 0.0 -4,-6 1.0 28 15.0 PRINCIPAL:1 ENSMUSG00000069441 Dsg1a ENSMUST00000077146 ENSMUSP00000076393 TRANSLATION protein_coding - CCDS50231.1 1 1057.0 29.0 8.2 0.0 187.1 0.0 3,-2 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000046668 Cxxc5 ENSMUST00000235404 ENSMUSP00000157410 TRANSLATION protein_coding stop - - 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000046668 Cxxc5 ENSMUST00000060722 ENSMUSP00000054307 TRANSLATION protein_coding - CCDS29150.1 1 317.0 8.0 1.0 0.0 30.8 0.0 -4,-5 1.0 8 18.0 PRINCIPAL:1 ENSMUSG00000046668 Cxxc5 ENSMUST00000235161 ENSMUSP00000157747 TRANSLATION protein_coding stop - - 151.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000046668 Cxxc5 ENSMUST00000237291 ENSMUSP00000158040 TRANSLATION protein_coding stop - - 222.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0016 5 -2.0 MINOR ENSMUSG00000046668 Cxxc5 ENSMUST00000235337 ENSMUSP00000158096 TRANSLATION protein_coding stop - - 211.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0016 5 -2.0 MINOR ENSMUSG00000046668 Cxxc5 ENSMUST00000235169 ENSMUSP00000157767 TRANSLATION protein_coding stop - - 205.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0016 5 -2.0 MINOR ENSMUSG00000038425 Poli ENSMUST00000121674 ENSMUSP00000112563 TRANSLATION protein_coding - CCDS29334.2 1 737.0 11.0 8.75 1.4 233.2 0.0 -4,-5 1.0 4 18.25 PRINCIPAL:1 ENSMUSG00000038425 Poli ENSMUST00000235127 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038425 Poli ENSMUST00000159389 ENSMUSP00000123964 TRANSLATION protein_coding - CCDS79660.1 1 651.0 3.0 7.25 0.0 175.9 0.0 -4,-5 0.0113 3 6.228 MINOR ENSMUSG00000038425 Poli ENSMUST00000043286 ENSMUSP00000039869 TRANSLATION protein_coding - CCDS50317.1 1 674.0 7.0 8.0 4.2 208.0 0.0 -4,-5 0.6538 3 14.324 MINOR ENSMUSG00000038425 Poli ENSMUST00000160713 ENSMUSP00000125467 TRANSLATION nonsense_mediated_decay - - 1 135.0 5.0 3.0 0.0 94.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038425 Poli ENSMUST00000161542 ENSMUSP00000124877 TRANSLATION protein_coding - CCDS50317.1 1 674.0 7.0 8.0 4.2 208.0 0.0 -4,-5 0.6538 3 14.324 MINOR ENSMUSG00000024271 Elp2 ENSMUST00000234903 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024271 Elp2 ENSMUST00000234266 ENSMUSP00000157109 TRANSLATION protein_coding - CCDS29103.1 - 831.0 0.0 8.214 0.0 100.8 0.0 -4,-7 1.0 18 12.0 PRINCIPAL:1 ENSMUSG00000024271 Elp2 ENSMUST00000234351 - NO_TRANSLATION retained_intron ENSMUSG00000024271 Elp2 ENSMUST00000234014 - NO_TRANSLATION retained_intron ENSMUSG00000024271 Elp2 ENSMUST00000234164 - NO_TRANSLATION retained_intron ENSMUSG00000024271 Elp2 ENSMUST00000025120 ENSMUSP00000025120 TRANSLATION protein_coding - - 1 741.0 0.0 6.914 0.0 84.1 0.0 -4,-7 0.0436 13 8.4 MINOR ENSMUSG00000024271 Elp2 ENSMUST00000234847 - NO_TRANSLATION retained_intron ENSMUSG00000024271 Elp2 ENSMUST00000234484 - NO_TRANSLATION retained_intron ENSMUSG00000110628 Marcol ENSMUST00000212114 ENSMUSP00000148313 TRANSLATION protein_coding - - 5 261.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.6445 - 0.0 PRINCIPAL:1 ENSMUSG00000043424 Eif3j2 ENSMUST00000057110 ENSMUSP00000054421 TRANSLATION protein_coding - CCDS57122.1 - 263.0 0.0 0.5 0.3 214.0 0.0 -2,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000051316 Taf7 ENSMUST00000066272 ENSMUSP00000065645 TRANSLATION protein_coding - CCDS29189.1 1 341.0 0.0 0.3 1.3 205.1 0.0 -4,-5 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000103770 Pcdha9 ENSMUST00000115659 ENSMUSP00000111323 TRANSLATION protein_coding - CCDS37777.1 1 979.0 46.0 0.8 0.4 500.0 0.0 -3,1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000033960 Jcad ENSMUST00000234153 ENSMUSP00000157313 TRANSLATION protein_coding - CCDS37719.1 - 1320.0 0.0 0.0 0.0 1891.8 0.0 -4,-5 1.0 31 6.0 PRINCIPAL:1 ENSMUSG00000033960 Jcad ENSMUST00000234494 - NO_TRANSLATION retained_intron ENSMUSG00000033960 Jcad ENSMUST00000037029 ENSMUSP00000038613 TRANSLATION protein_coding - CCDS37719.1 5 1320.0 0.0 0.0 0.0 1891.8 0.0 -4,-5 1.0 31 6.0 PRINCIPAL:1 ENSMUSG00000024232 Bambi ENSMUST00000025075 ENSMUSP00000025075 TRANSLATION protein_coding - CCDS29034.1 1 260.0 0.0 0.0 30.5 209.0 0.0 -1,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000042660 Wdr55 ENSMUST00000049323 ENSMUSP00000039010 TRANSLATION protein_coding - CCDS29162.1 1 388.0 0.0 7.08 0.0 47.3 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000042660 Wdr55 ENSMUST00000235748 ENSMUSP00000157945 TRANSLATION nonsense_mediated_decay start - - 46.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000042660 Wdr55 ENSMUST00000236324 - NO_TRANSLATION retained_intron ENSMUSG00000024565 Sall3 ENSMUST00000238808 ENSMUSP00000158909 TRANSLATION protein_coding - - - 1320.0 36.0 1.24 0.4 134.3 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000024565 Sall3 ENSMUST00000057950 ENSMUSP00000056967 TRANSLATION protein_coding - CCDS29371.1 1 1248.0 28.0 0.6 0.4 118.8 0.0 -4,-5 0.2605 3 8.64 MINOR ENSMUSG00000024565 Sall3 ENSMUST00000235746 - NO_TRANSLATION retained_intron ENSMUSG00000024277 Mapre2 ENSMUST00000025127 ENSMUSP00000025127 TRANSLATION protein_coding - CCDS29095.1 1 326.0 3.0 4.7 20.3 104.8 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:4 ENSMUSG00000024277 Mapre2 ENSMUST00000132286 - NO_TRANSLATION retained_intron ENSMUSG00000024277 Mapre2 ENSMUST00000149943 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024277 Mapre2 ENSMUST00000115830 ENSMUSP00000111496 TRANSLATION protein_coding - CCDS50237.1 1 317.0 3.0 4.7 4.6 104.8 0.0 -4,-7 0.4384 7 11.748 MINOR ENSMUSG00000024277 Mapre2 ENSMUST00000155708 ENSMUSP00000118807 TRANSLATION protein_coding stop - 5 260.0 3.0 4.7 0.0 104.8 0.0 -4,-5 0.0086 7 -2.0 MINOR ENSMUSG00000024277 Mapre2 ENSMUST00000141853 - NO_TRANSLATION retained_intron ENSMUSG00000024277 Mapre2 ENSMUST00000118826 ENSMUSP00000114113 TRANSLATION protein_coding - - 1 171.0 3.0 3.5 0.0 48.4 0.0 -4,-5 0.0 4 7.4 MINOR ENSMUSG00000024277 Mapre2 ENSMUST00000170802 ENSMUSP00000128040 TRANSLATION protein_coding - CCDS50238.1 5 284.0 3.0 4.7 20.3 104.8 0.0 -4,-5 0.9309 7 15.0 ALTERNATIVE:1 ENSMUSG00000024277 Mapre2 ENSMUST00000165387 ENSMUSP00000131142 TRANSLATION nonsense_mediated_decay - - 5 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062328 Rpl17 ENSMUST00000079716 ENSMUSP00000078654 TRANSLATION protein_coding - CCDS29344.1 1 184.0 0.0 4.0 36.9 156.8 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000062328 Rpl17 ENSMUST00000237431 ENSMUSP00000157556 TRANSLATION protein_coding - CCDS29344.1 - 184.0 0.0 4.0 36.9 156.8 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000036412 Arsi ENSMUST00000040359 ENSMUSP00000043966 TRANSLATION protein_coding - CCDS29275.1 1 573.0 5.0 1.24 13.4 238.7 0.0 0,-3 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000039954 Stk32a ENSMUST00000235682 - NO_TRANSLATION retained_intron ENSMUSG00000039954 Stk32a ENSMUST00000045477 ENSMUSP00000038471 TRANSLATION protein_coding - CCDS29218.1 1 398.0 6.0 8.95 19.5 224.9 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000039954 Stk32a ENSMUST00000236899 ENSMUSP00000158223 TRANSLATION protein_coding start - - 108.0 0.0 2.0 0.0 61.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039954 Stk32a ENSMUST00000237797 ENSMUSP00000158482 TRANSLATION protein_coding - - - 368.0 4.0 7.95 0.0 171.9 0.0 -4,-5 0.0008 - 10.824 MINOR ENSMUSG00000025420 Katnal2 ENSMUST00000026486 ENSMUSP00000026486 TRANSLATION protein_coding - CCDS37865.1 1 409.0 12.0 5.08 0.0 136.8 0.0 -4,-6 0.0207 - 11.634 MINOR ENSMUSG00000025420 Katnal2 ENSMUST00000137354 ENSMUSP00000118511 TRANSLATION protein_coding - - 5 277.0 12.0 5.55 0.0 123.2 0.0 -4,-5 0.0016 - 11.754 MINOR ENSMUSG00000025420 Katnal2 ENSMUST00000137498 ENSMUSP00000117495 TRANSLATION protein_coding - - 5 495.0 15.0 6.8 0.0 123.2 0.0 -4,-5 0.0207 - 16.254 MINOR ENSMUSG00000025420 Katnal2 ENSMUST00000138336 - NO_TRANSLATION retained_intron ENSMUSG00000025420 Katnal2 ENSMUST00000154053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025420 Katnal2 ENSMUST00000122984 ENSMUSP00000118424 TRANSLATION nonsense_mediated_decay - - 5 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025420 Katnal2 ENSMUST00000126153 ENSMUSP00000122079 TRANSLATION protein_coding - - 1 539.0 15.0 6.8 17.2 152.3 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000025420 Katnal2 ENSMUST00000125744 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025420 Katnal2 ENSMUST00000123650 ENSMUSP00000115489 TRANSLATION protein_coding - - 1 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000025420 Katnal2 ENSMUST00000154665 ENSMUSP00000119066 TRANSLATION protein_coding - - 1 217.0 0.0 0.0 0.0 29.1 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000025420 Katnal2 ENSMUST00000135029 ENSMUSP00000115411 TRANSLATION nonsense_mediated_decay - - 2 372.0 12.0 4.198 0.0 114.3 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024491 Rbm27 ENSMUST00000046972 ENSMUSP00000041688 TRANSLATION protein_coding - - 5 961.0 4.0 0.0 1.0 55.3 0.0 -4,-6 0.2204 15 10.0 MINOR ENSMUSG00000024491 Rbm27 ENSMUST00000237086 - NO_TRANSLATION retained_intron ENSMUSG00000024491 Rbm27 ENSMUST00000237798 - NO_TRANSLATION retained_intron ENSMUSG00000024491 Rbm27 ENSMUST00000236240 ENSMUSP00000158063 TRANSLATION protein_coding - - - 1060.0 4.0 0.0 5.3 55.3 0.0 -4,-6 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000024491 Rbm27 ENSMUST00000091920 ENSMUSP00000089540 TRANSLATION protein_coding - CCDS50267.1 1 1005.0 4.0 0.0 0.0 55.3 0.0 -4,-6 0.3298 14 10.0 MINOR ENSMUSG00000049090 Ptgr3 ENSMUST00000235383 ENSMUSP00000158299 TRANSLATION protein_coding - - - 254.0 23.0 1.0 8.4 97.9 0.0 -4,-6 0.7483 9 15.408 MINOR ENSMUSG00000049090 Ptgr3 ENSMUST00000060223 ENSMUSP00000052544 TRANSLATION protein_coding - CCDS29381.1 1 377.0 25.0 3.0 9.1 97.9 0.0 -4,-1 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000053846 Lipg ENSMUST00000235783 - NO_TRANSLATION retained_intron ENSMUSG00000053846 Lipg ENSMUST00000066532 ENSMUSP00000066536 TRANSLATION protein_coding - CCDS29343.1 1 500.0 7.0 5.96 11.5 450.4 0.0 -1,-6 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000035765 Dym ENSMUST00000236840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035765 Dym ENSMUST00000235554 - NO_TRANSLATION retained_intron ENSMUSG00000035765 Dym ENSMUST00000236220 ENSMUSP00000157621 TRANSLATION protein_coding - - - 263.0 0.0 0.0 0.0 149.2 0.0 -4,-5 0.0 5 0.0 MINOR ENSMUSG00000035765 Dym ENSMUST00000039608 ENSMUSP00000047054 TRANSLATION protein_coding - CCDS29346.1 1 669.0 0.0 0.0 32.7 597.1 0.0 -4,-5 1.0 10 10.0 PRINCIPAL:1 ENSMUSG00000035765 Dym ENSMUST00000235692 ENSMUSP00000157969 TRANSLATION protein_coding - - - 344.0 0.0 0.0 0.0 153.5 0.0 -4,-5 0.0004 5 0.0 MINOR ENSMUSG00000035765 Dym ENSMUST00000235545 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024383 Map3k2 ENSMUST00000234576 - NO_TRANSLATION retained_intron ENSMUSG00000024383 Map3k2 ENSMUST00000096575 ENSMUSP00000094326 TRANSLATION protein_coding - CCDS29117.1 1 619.0 20.0 6.38 24.1 269.4 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000024383 Map3k2 ENSMUST00000234611 - NO_TRANSLATION retained_intron ENSMUSG00000047989 Ino80c ENSMUST00000055012 ENSMUSP00000055342 TRANSLATION protein_coding - - 5 231.0 0.0 1.75 0.0 0.0 0.0 -4,-7 0.0 3 3.342 MINOR ENSMUSG00000047989 Ino80c ENSMUST00000141489 ENSMUSP00000122372 TRANSLATION protein_coding - - 1 94.0 0.0 1.33 0.0 28.7 0.0 -4,-7 0.0034 2 6.564 MINOR ENSMUSG00000047989 Ino80c ENSMUST00000125169 ENSMUSP00000117684 TRANSLATION protein_coding - - 3 134.0 0.0 3.08 6.0 42.4 0.0 -4,-5 0.3183 6 13.48 MINOR ENSMUSG00000047989 Ino80c ENSMUST00000153360 ENSMUSP00000114643 TRANSLATION protein_coding - CCDS29099.1 1 191.0 0.0 3.08 14.5 42.4 0.0 -4,-7 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000052229 Gpr17 ENSMUST00000064016 ENSMUSP00000063670 TRANSLATION protein_coding - CCDS29114.1 1 339.0 0.0 1.0 20.9 152.3 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024235 Map3k8 ENSMUST00000025078 ENSMUSP00000025078 TRANSLATION protein_coding - CCDS29036.1 1 467.0 6.0 5.65 16.7 159.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000024235 Map3k8 ENSMUST00000105472 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024235 Map3k8 ENSMUST00000173930 ENSMUSP00000133469 TRANSLATION nonsense_mediated_decay - - 1 181.0 1.0 1.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024235 Map3k8 ENSMUST00000172805 - NO_TRANSLATION retained_intron ENSMUSG00000024235 Map3k8 ENSMUST00000173708 - NO_TRANSLATION retained_intron ENSMUSG00000024304 Cdh2 ENSMUST00000025166 ENSMUSP00000025166 TRANSLATION protein_coding - CCDS29076.1 1 906.0 58.0 12.92 9.2 575.1 1.0 2,-2 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000024304 Cdh2 ENSMUST00000115850 ENSMUSP00000111516 TRANSLATION protein_coding - - 5 849.0 58.0 11.92 2.0 534.1 1.0 -4,-7 0.1119 17 13.908 MINOR ENSMUSG00000024304 Cdh2 ENSMUST00000152779 - NO_TRANSLATION retained_intron ENSMUSG00000047307 Pcdhb13 ENSMUST00000056915 ENSMUSP00000061087 TRANSLATION protein_coding - CCDS29179.1 - 796.0 53.0 1.0 2.0 437.2 0.0 0,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000024366 Gfra3 ENSMUST00000025224 ENSMUSP00000025224 TRANSLATION protein_coding - CCDS29133.1 1 397.0 0.0 4.165 0.3 122.9 0.0 3,-2 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000046191 Pcdhb20 ENSMUST00000052179 ENSMUSP00000137038 TRANSLATION protein_coding - CCDS57120.1 - 799.0 53.0 1.0 8.3 452.0 0.0 2,-4 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000035394 Cfap53 ENSMUST00000114895 ENSMUSP00000110545 TRANSLATION protein_coding - CCDS37857.2 1 514.0 0.0 0.0 7.7 66.7 0.0 -4,-6 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000035394 Cfap53 ENSMUST00000176766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035394 Cfap53 ENSMUST00000177407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035394 Cfap53 ENSMUST00000176435 ENSMUSP00000134908 TRANSLATION nonsense_mediated_decay - - 1 38.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035394 Cfap53 ENSMUST00000177101 ENSMUSP00000135452 TRANSLATION nonsense_mediated_decay - - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000080418 ENSMUSP00000079280 TRANSLATION protein_coding - CCDS29305.1 1 855.0 0.0 16.45 7.6 532.4 0.0 -4,-7 0.3965 9 3.84 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000235571 - NO_TRANSLATION retained_intron ENSMUSG00000024589 Nedd4l ENSMUST00000225057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024589 Nedd4l ENSMUST00000235339 - NO_TRANSLATION retained_intron ENSMUSG00000024589 Nedd4l ENSMUST00000235204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024589 Nedd4l ENSMUST00000237492 - NO_TRANSLATION retained_intron ENSMUSG00000024589 Nedd4l ENSMUST00000225261 ENSMUSP00000153107 TRANSLATION protein_coding stop - - 224.0 10.0 5.75 0.0 140.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000224347 ENSMUSP00000153052 TRANSLATION protein_coding - CCDS29305.1 - 855.0 0.0 16.45 7.6 532.4 0.0 -4,-7 0.3965 9 3.84 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000236209 ENSMUSP00000157586 TRANSLATION protein_coding - - - 912.0 10.0 18.95 2.2 576.9 0.0 -4,-5 0.1359 11 11.774 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000237854 ENSMUSP00000157910 TRANSLATION protein_coding - - - 835.0 0.0 16.45 7.0 532.4 0.0 -4,-7 0.317 8 3.657 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000236103 ENSMUSP00000157658 TRANSLATION protein_coding - - - 751.0 0.0 15.45 1.9 484.1 0.0 -4,-7 0.0645 6 1.479 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000236898 ENSMUSP00000158272 TRANSLATION protein_coding - - - 1004.0 10.0 19.45 0.0 625.2 0.0 -4,-5 0.1448 13 12.998 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000235343 ENSMUSP00000158026 TRANSLATION protein_coding - CCDS50309.1 - 976.0 10.0 19.95 10.2 625.2 0.0 -4,-5 1.0 13 16.844 PRINCIPAL:3 ENSMUSG00000024589 Nedd4l ENSMUST00000238376 ENSMUSP00000158688 TRANSLATION protein_coding stop - - 383.0 1.0 0.5 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000226058 ENSMUSP00000153526 TRANSLATION protein_coding - CCDS29305.1 - 855.0 0.0 16.45 7.6 532.4 0.0 -4,-7 0.3965 9 3.84 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000224516 - NO_TRANSLATION retained_intron ENSMUSG00000024589 Nedd4l ENSMUST00000236929 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024589 Nedd4l ENSMUST00000236595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024589 Nedd4l ENSMUST00000237384 ENSMUSP00000158238 TRANSLATION protein_coding - CCDS29305.1 - 855.0 0.0 16.45 7.6 532.4 0.0 -4,-7 0.3965 9 3.84 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000237410 ENSMUSP00000158044 TRANSLATION protein_coding - - - 984.0 10.0 19.45 0.0 625.2 0.0 -4,-5 0.1367 12 12.998 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000236916 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024589 Nedd4l ENSMUST00000235310 ENSMUSP00000158140 TRANSLATION protein_coding stop - - 94.0 0.0 2.25 0.0 31.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000235743 ENSMUSP00000157929 TRANSLATION protein_coding - - - 872.0 10.0 18.95 0.0 576.9 0.0 -4,-5 0.059 10 11.402 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000223959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024589 Nedd4l ENSMUST00000224890 - NO_TRANSLATION retained_intron ENSMUSG00000024589 Nedd4l ENSMUST00000224385 ENSMUSP00000153594 TRANSLATION protein_coding stop - - 113.0 0.0 2.75 0.0 47.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000235577 ENSMUSP00000158043 TRANSLATION protein_coding start/stop - - 256.0 0.0 2.95 0.0 92.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000163516 ENSMUSP00000132838 TRANSLATION protein_coding - - 5 835.0 0.0 16.45 7.0 532.4 0.0 -4,-7 0.317 8 3.657 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000236736 ENSMUSP00000157490 TRANSLATION protein_coding - - - 956.0 10.0 19.95 10.7 625.2 0.0 -4,-5 0.8685 12 17.0 ALTERNATIVE:1 ENSMUSG00000024589 Nedd4l ENSMUST00000237644 ENSMUSP00000158050 TRANSLATION protein_coding start - - 527.0 0.0 12.95 0.0 391.7 0.0 -4,-7 0.001 5 -2.0 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000238122 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024589 Nedd4l ENSMUST00000236764 ENSMUSP00000158323 TRANSLATION protein_coding stop - - 37.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024589 Nedd4l ENSMUST00000236100 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024589 Nedd4l ENSMUST00000237818 - NO_TRANSLATION retained_intron ENSMUSG00000024589 Nedd4l ENSMUST00000224663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024570 Rbfa ENSMUST00000236460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024570 Rbfa ENSMUST00000025462 ENSMUSP00000025462 TRANSLATION protein_coding - CCDS29364.1 1 350.0 0.0 3.0 0.0 51.6 0.0 -3,1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000039616 Mocos ENSMUST00000234253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039616 Mocos ENSMUST00000068006 ENSMUSP00000063609 TRANSLATION protein_coding - CCDS37750.1 1 862.0 14.0 4.093 0.4 294.4 0.0 -4,-7 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000054321 Taf4b ENSMUST00000169862 ENSMUSP00000126909 TRANSLATION protein_coding - CCDS50227.1 5 855.0 0.0 4.3 0.1 352.5 0.0 -2,-3 0.8909 1 8.0 ALTERNATIVE:2 ENSMUSG00000054321 Taf4b ENSMUST00000234789 ENSMUSP00000157354 TRANSLATION protein_coding - - - 850.0 0.0 4.3 0.1 352.5 0.0 -2,-3 0.8765 2 8.0 PRINCIPAL:3 ENSMUSG00000025880 Smad7 ENSMUST00000026999 ENSMUSP00000026999 TRANSLATION protein_coding - CCDS37860.1 1 426.0 4.0 2.1 9.1 271.0 0.0 -4,-7 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000025880 Smad7 ENSMUST00000174411 ENSMUSP00000133696 TRANSLATION protein_coding - - 5 227.0 0.0 2.0 0.0 167.6 0.0 -4,-5 0.0083 - 5.712 MINOR ENSMUSG00000025880 Smad7 ENSMUST00000174843 ENSMUSP00000133544 TRANSLATION protein_coding start/stop - 3 264.0 4.0 1.1 0.0 136.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025880 Smad7 ENSMUST00000172718 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047033 Pcdhb15 ENSMUST00000050034 ENSMUSP00000059598 TRANSLATION protein_coding - CCDS29181.1 - 786.0 55.0 1.0 4.3 449.5 0.0 -1,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000037416 Dmxl1 ENSMUST00000181828 - NO_TRANSLATION retained_intron ENSMUSG00000037416 Dmxl1 ENSMUST00000181907 - NO_TRANSLATION retained_intron ENSMUSG00000037416 Dmxl1 ENSMUST00000180611 ENSMUSP00000137871 TRANSLATION protein_coding - CCDS37816.2 1 3013.0 0.0 2.22 0.0 303.6 0.0 -4,-5 1.0 43 8.0 PRINCIPAL:2 ENSMUSG00000037416 Dmxl1 ENSMUST00000041772 ENSMUSP00000045559 TRANSLATION protein_coding - - 5 3025.0 0.0 2.22 0.0 303.6 0.0 -4,-5 0.4122 43 8.0 ALTERNATIVE:2 ENSMUSG00000037416 Dmxl1 ENSMUST00000224938 ENSMUSP00000153077 TRANSLATION protein_coding start/stop - - 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0276 1 -2.0 MINOR ENSMUSG00000037416 Dmxl1 ENSMUST00000181042 - NO_TRANSLATION retained_intron ENSMUSG00000054008 Ndst1 ENSMUST00000169273 ENSMUSP00000126623 TRANSLATION protein_coding - CCDS37834.1 1 882.0 18.0 5.9 18.9 988.5 2.0 -1,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000054008 Ndst1 ENSMUST00000237070 ENSMUSP00000157852 TRANSLATION protein_coding stop - - 64.0 0.0 0.0 0.0 0.0 2.0 -1,-5 0.0023 - -2.0 MINOR ENSMUSG00000054008 Ndst1 ENSMUST00000237783 ENSMUSP00000158312 TRANSLATION protein_coding - CCDS37834.1 - 882.0 18.0 5.9 18.9 988.5 2.0 -1,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000054008 Ndst1 ENSMUST00000237885 ENSMUSP00000157775 TRANSLATION protein_coding stop - - 96.0 0.0 0.0 0.0 30.4 2.0 -1,-5 0.0014 - -2.0 MINOR ENSMUSG00000054008 Ndst1 ENSMUST00000235795 ENSMUSP00000158439 TRANSLATION protein_coding - - - 185.0 0.0 0.0 0.0 103.1 2.0 -1,-5 0.0014 - 0.0 MINOR ENSMUSG00000054008 Ndst1 ENSMUST00000237572 ENSMUSP00000157512 TRANSLATION protein_coding start/stop - - 101.0 4.0 1.5 0.0 26.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040957 Cables1 ENSMUST00000046948 ENSMUSP00000040639 TRANSLATION protein_coding - CCDS29061.1 1 568.0 0.0 3.0 0.0 29.0 0.0 -2,1 1.0 6 6.0 PRINCIPAL:2 ENSMUSG00000040957 Cables1 ENSMUST00000171109 ENSMUSP00000129463 TRANSLATION protein_coding - CCDS50220.1 1 594.0 0.0 3.0 0.0 29.0 0.0 -2,1 0.3754 7 6.0 ALTERNATIVE:2 ENSMUSG00000040957 Cables1 ENSMUST00000225430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024384 Iws1 ENSMUST00000212115 - NO_TRANSLATION retained_intron ENSMUSG00000024384 Iws1 ENSMUST00000025243 ENSMUSP00000025243 TRANSLATION protein_coding - CCDS29115.1 1 766.0 0.0 6.98 0.1 56.2 0.0 -4,-5 1.0 6 8.0 PRINCIPAL:2 ENSMUSG00000024384 Iws1 ENSMUST00000212458 ENSMUSP00000148707 TRANSLATION protein_coding start - 3 198.0 0.0 2.6 0.0 56.2 0.0 -4,-5 0.0033 6 -2.0 MINOR ENSMUSG00000024384 Iws1 ENSMUST00000213074 ENSMUSP00000148489 TRANSLATION nonsense_mediated_decay start - 5 91.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024384 Iws1 ENSMUST00000212280 ENSMUSP00000148588 TRANSLATION nonsense_mediated_decay start - 3 155.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024384 Iws1 ENSMUST00000212675 ENSMUSP00000148514 TRANSLATION protein_coding - - 5 765.0 0.0 6.98 0.1 56.2 0.0 -4,-5 0.5851 6 8.0 ALTERNATIVE:2 ENSMUSG00000024384 Iws1 ENSMUST00000212104 - NO_TRANSLATION retained_intron ENSMUSG00000073568 Arl14epl ENSMUST00000234910 ENSMUSP00000157009 TRANSLATION protein_coding - CCDS29237.1 - 152.0 2.0 2.0 12.9 122.6 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000073568 Arl14epl ENSMUST00000097580 ENSMUSP00000095187 TRANSLATION protein_coding - CCDS29237.1 1 152.0 2.0 2.0 12.9 122.6 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000044022 Pcdhb21 ENSMUST00000061405 ENSMUSP00000056424 TRANSLATION protein_coding - CCDS29186.1 - 774.0 52.0 1.0 0.0 423.2 0.0 1,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000038128 Camk4 ENSMUST00000234001 ENSMUSP00000157088 TRANSLATION protein_coding stop - - 67.0 6.0 1.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038128 Camk4 ENSMUST00000234205 ENSMUSP00000157012 TRANSLATION nonsense_mediated_decay - CCDS29122.1 - 469.0 18.0 8.03 1.4 262.4 0.0 -4,-5 1.0 11 -2.0 MINOR ENSMUSG00000038128 Camk4 ENSMUST00000234654 ENSMUSP00000157216 TRANSLATION nonsense_mediated_decay - CCDS29122.1 - 469.0 18.0 8.03 1.4 262.4 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000038128 Camk4 ENSMUST00000042868 ENSMUSP00000046539 TRANSLATION protein_coding - CCDS29122.1 1 469.0 18.0 8.03 1.4 262.4 0.0 -4,-5 1.0 11 19.0 PRINCIPAL:1 ENSMUSG00000035984 Nme5 ENSMUST00000079287 ENSMUSP00000078269 TRANSLATION protein_coding - CCDS29130.1 1 211.0 11.0 4.75 18.5 195.0 0.0 -4,-6 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000035984 Nme5 ENSMUST00000154342 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035984 Nme5 ENSMUST00000134875 ENSMUSP00000118213 TRANSLATION nonsense_mediated_decay - - 1 114.0 8.0 2.0 0.0 90.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000035984 Nme5 ENSMUST00000155114 ENSMUSP00000116092 TRANSLATION nonsense_mediated_decay - - 2 43.0 1.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000103332 Pcdhga2 ENSMUST00000193869 ENSMUSP00000141482 TRANSLATION protein_coding - CCDS79623.1 1 931.0 54.0 0.8 0.0 553.7 0.0 4,-1 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000024260 Sap130 ENSMUST00000234769 - NO_TRANSLATION retained_intron ENSMUSG00000024260 Sap130 ENSMUST00000234846 ENSMUSP00000157213 TRANSLATION protein_coding stop - - 115.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000024260 Sap130 ENSMUST00000234461 - NO_TRANSLATION retained_intron ENSMUSG00000024260 Sap130 ENSMUST00000025109 ENSMUSP00000025109 TRANSLATION protein_coding - CCDS57117.1 1 1056.0 0.0 0.66 17.9 753.0 0.0 -4,-2 1.0 7 12.0 PRINCIPAL:4 ENSMUSG00000024260 Sap130 ENSMUST00000234760 - NO_TRANSLATION retained_intron ENSMUSG00000024260 Sap130 ENSMUST00000235017 ENSMUSP00000157127 TRANSLATION protein_coding - - - 1057.0 0.0 0.66 17.9 753.0 0.0 -4,-2 0.872 7 12.0 ALTERNATIVE:1 ENSMUSG00000024260 Sap130 ENSMUST00000234772 ENSMUSP00000157074 TRANSLATION protein_coding stop - - 60.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000110576 Gm36368 ENSMUST00000212026 ENSMUSP00000148409 TRANSLATION protein_coding - - 5 91.0 0.0 2.58 1.5 45.6 0.0 -1,-4 0.7704 - 13.0 PRINCIPAL:1 ENSMUSG00000110576 Gm36368 ENSMUST00000236302 ENSMUSP00000158461 TRANSLATION protein_coding - - - 81.0 0.0 1.83 0.0 45.6 0.0 -4,-5 0.0084 - 10.254 MINOR ENSMUSG00000001473 Tubb6 ENSMUST00000236667 - NO_TRANSLATION retained_intron ENSMUSG00000001473 Tubb6 ENSMUST00000001513 ENSMUSP00000001513 TRANSLATION protein_coding - CCDS29321.1 1 447.0 16.0 3.5 0.4 376.3 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000079608 Stard6 ENSMUST00000173612 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079608 Stard6 ENSMUST00000164223 ENSMUSP00000126055 TRANSLATION protein_coding - CCDS37854.1 1 233.0 0.0 5.58 0.7 93.9 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000079608 Stard6 ENSMUST00000168249 ENSMUSP00000130991 TRANSLATION protein_coding - CCDS37854.1 1 233.0 0.0 5.58 0.7 93.9 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000079608 Stard6 ENSMUST00000114959 ENSMUSP00000110609 TRANSLATION protein_coding - CCDS37854.1 1 233.0 0.0 5.58 0.7 93.9 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000079608 Stard6 ENSMUST00000174118 ENSMUSP00000134511 TRANSLATION protein_coding - CCDS37854.1 1 233.0 0.0 5.58 0.7 93.9 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000079608 Stard6 ENSMUST00000173951 ENSMUSP00000134211 TRANSLATION protein_coding stop - 5 54.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000079608 Stard6 ENSMUST00000174667 ENSMUSP00000133956 TRANSLATION protein_coding stop - 3 98.0 0.0 2.75 0.0 37.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000033022 Cdo1 ENSMUST00000035804 ENSMUSP00000046517 TRANSLATION protein_coding - CCDS29234.1 1 200.0 3.0 5.778 27.1 259.8 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000033022 Cdo1 ENSMUST00000234819 ENSMUSP00000157285 TRANSLATION protein_coding - - - 174.0 3.0 5.028 0.0 189.9 0.0 -4,-5 0.0205 4 9.306 MINOR ENSMUSG00000033022 Cdo1 ENSMUST00000234064 ENSMUSP00000157361 TRANSLATION nonsense_mediated_decay - - - 149.0 2.0 4.25 0.0 188.7 0.0 -4,-5 0.0003 2 -2.0 MINOR ENSMUSG00000033022 Cdo1 ENSMUST00000234179 ENSMUSP00000157139 TRANSLATION protein_coding start/stop - - 143.0 3.0 3.9 0.0 213.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000033022 Cdo1 ENSMUST00000234222 ENSMUSP00000157344 TRANSLATION nonsense_mediated_decay - - - 96.0 0.0 2.6 0.0 104.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000038121 Fam210a ENSMUST00000152193 ENSMUSP00000122677 TRANSLATION protein_coding stop - 2 107.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 1 -2.0 MINOR ENSMUSG00000038121 Fam210a ENSMUST00000042852 ENSMUSP00000045927 TRANSLATION protein_coding - CCDS29326.1 1 273.0 0.0 2.2 11.0 81.2 0.0 -4,0 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000006850 Tmco6 ENSMUST00000237559 - NO_TRANSLATION retained_intron ENSMUSG00000006850 Tmco6 ENSMUST00000237255 - NO_TRANSLATION retained_intron ENSMUSG00000006850 Tmco6 ENSMUST00000237727 ENSMUSP00000157431 TRANSLATION nonsense_mediated_decay - - - 128.0 0.0 0.48 0.0 26.8 0.0 -4,0 0.0198 - -2.0 MINOR ENSMUSG00000006850 Tmco6 ENSMUST00000007046 ENSMUSP00000007046 TRANSLATION protein_coding - CCDS37772.1 1 494.0 0.0 6.83 11.0 26.8 0.0 -4,0 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000006850 Tmco6 ENSMUST00000237079 - NO_TRANSLATION retained_intron ENSMUSG00000006850 Tmco6 ENSMUST00000237870 ENSMUSP00000158109 TRANSLATION protein_coding - - - 74.0 0.0 0.0 0.0 26.8 0.0 -4,0 0.0209 - 6.0 MINOR ENSMUSG00000024400 Wdr33 ENSMUST00000234302 - NO_TRANSLATION retained_intron ENSMUSG00000024400 Wdr33 ENSMUST00000234957 ENSMUSP00000157157 TRANSLATION protein_coding - CCDS50242.1 - 271.0 0.0 6.0 0.0 46.3 0.0 -4,-2 0.0136 7 1.77 MINOR ENSMUSG00000024400 Wdr33 ENSMUST00000234937 - NO_TRANSLATION retained_intron ENSMUSG00000024400 Wdr33 ENSMUST00000234137 - NO_TRANSLATION retained_intron ENSMUSG00000024400 Wdr33 ENSMUST00000234344 ENSMUSP00000157238 TRANSLATION protein_coding - - - 312.0 0.0 4.55 0.0 14.9 0.0 -4,-2 0.0028 5 0.0 MINOR ENSMUSG00000024400 Wdr33 ENSMUST00000025264 ENSMUSP00000025264 TRANSLATION protein_coding - CCDS29112.1 5 1330.0 0.0 10.3 0.1 116.8 0.0 -4,-2 1.0 28 12.0 PRINCIPAL:1 ENSMUSG00000024400 Wdr33 ENSMUST00000082319 ENSMUSP00000080936 TRANSLATION protein_coding - - 1 255.0 0.0 5.55 1.0 46.3 0.0 -4,-2 0.0096 7 1.77 MINOR ENSMUSG00000045498 Pcdhb3 ENSMUST00000051754 ENSMUSP00000059180 TRANSLATION protein_coding - CCDS29171.1 - 784.0 50.0 1.0 0.8 441.5 0.0 -1,-4 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000063687 Pcdhb5 ENSMUST00000078271 ENSMUSP00000077389 TRANSLATION protein_coding - CCDS29173.1 - 792.0 55.0 1.0 6.2 448.7 0.0 -3,-5 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000102748 Pcdhgb2 ENSMUST00000193631 - NO_TRANSLATION retained_intron ENSMUSG00000102748 Pcdhgb2 ENSMUST00000195112 ENSMUSP00000141449 TRANSLATION protein_coding - CCDS79626.1 1 928.0 52.0 1.0 0.0 512.8 0.0 4,-1 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000073542 Cep76 ENSMUST00000237975 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073542 Cep76 ENSMUST00000236857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073542 Cep76 ENSMUST00000097542 ENSMUSP00000095149 TRANSLATION protein_coding - CCDS37850.1 1 659.0 0.0 0.0 34.2 204.2 0.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000024493 Lars ENSMUST00000097590 ENSMUSP00000095197 TRANSLATION protein_coding - CCDS37796.1 1 1178.0 18.0 23.535 22.7 200.0 0.0 -4,-5 1.0 44 22.0 PRINCIPAL:1 ENSMUSG00000024493 Lars ENSMUST00000236304 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024493 Lars ENSMUST00000236826 - NO_TRANSLATION retained_intron ENSMUSG00000024493 Lars ENSMUST00000236102 ENSMUSP00000157939 TRANSLATION protein_coding stop - - 99.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024493 Lars ENSMUST00000235845 ENSMUSP00000157407 TRANSLATION nonsense_mediated_decay start - - 54.0 0.0 1.5 0.0 30.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024493 Lars ENSMUST00000237587 ENSMUSP00000158450 TRANSLATION nonsense_mediated_decay start - - 213.0 11.0 3.88 0.0 39.4 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000024493 Lars ENSMUST00000235432 ENSMUSP00000157918 TRANSLATION nonsense_mediated_decay - - - 102.0 7.0 2.3 0.0 46.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024493 Lars ENSMUST00000237520 - NO_TRANSLATION retained_intron ENSMUSG00000024493 Lars ENSMUST00000237882 - NO_TRANSLATION retained_intron ENSMUSG00000024493 Lars ENSMUST00000236226 - NO_TRANSLATION retained_intron ENSMUSG00000024529 Lox ENSMUST00000171470 ENSMUSP00000129247 TRANSLATION protein_coding - CCDS50289.1 1 411.0 0.0 5.0 5.7 312.5 0.0 3,-1 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000024529 Lox ENSMUST00000025409 ENSMUSP00000025409 TRANSLATION protein_coding - CCDS50289.1 1 411.0 0.0 5.0 5.7 312.5 0.0 3,-1 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000024347 Psd2 ENSMUST00000115716 ENSMUSP00000111381 TRANSLATION protein_coding - CCDS37767.1 1 770.0 5.0 7.35 1.1 249.5 0.0 -4,-5 1.0 10 13.838 PRINCIPAL:2 ENSMUSG00000024347 Psd2 ENSMUST00000177432 ENSMUSP00000135431 TRANSLATION protein_coding - CCDS79612.1 1 767.0 5.0 7.35 0.1 235.3 0.0 -4,-5 0.5392 10 12.838 MINOR ENSMUSG00000024347 Psd2 ENSMUST00000176873 ENSMUSP00000135616 TRANSLATION protein_coding - - 1 771.0 5.0 7.43 1.1 244.6 0.0 -4,-5 0.5953 10 14.0 ALTERNATIVE:2 ENSMUSG00000024347 Psd2 ENSMUST00000176472 ENSMUSP00000135285 TRANSLATION nonsense_mediated_decay - - 1 554.0 2.0 3.85 0.0 161.8 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024347 Psd2 ENSMUST00000175734 ENSMUSP00000135795 TRANSLATION protein_coding - - 1 771.0 5.0 7.43 1.1 244.6 0.0 -4,-5 0.5953 10 14.0 ALTERNATIVE:2 ENSMUSG00000024347 Psd2 ENSMUST00000175720 - NO_TRANSLATION retained_intron ENSMUSG00000064036 Mro ENSMUST00000134847 ENSMUSP00000118500 TRANSLATION protein_coding stop - 3 51.0 0.0 0.45 0.0 0.0 0.0 -4,-7 0.0183 - -2.0 MINOR ENSMUSG00000064036 Mro ENSMUST00000119239 ENSMUSP00000113392 TRANSLATION protein_coding - CCDS50319.1 5 245.0 0.0 4.0 1.1 0.0 0.0 -4,-7 0.6802 - 7.0 ALTERNATIVE:2 ENSMUSG00000064036 Mro ENSMUST00000120033 ENSMUSP00000113434 TRANSLATION protein_coding - CCDS79663.1 1 246.0 0.0 4.0 1.1 0.0 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000064036 Mro ENSMUST00000179472 ENSMUSP00000136775 TRANSLATION protein_coding - CCDS79663.1 5 246.0 0.0 4.0 1.1 0.0 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000064036 Mro ENSMUST00000139821 - NO_TRANSLATION retained_intron ENSMUSG00000064036 Mro ENSMUST00000136473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054072 Iigp1 ENSMUST00000237185 ENSMUSP00000157568 TRANSLATION protein_coding - CCDS29270.1 - 413.0 15.0 1.0 0.0 594.3 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000054072 Iigp1 ENSMUST00000237794 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054072 Iigp1 ENSMUST00000032473 ENSMUSP00000032473 TRANSLATION protein_coding - CCDS29270.1 3 413.0 15.0 1.0 0.0 594.3 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000054072 Iigp1 ENSMUST00000066912 ENSMUSP00000063390 TRANSLATION protein_coding - CCDS29270.1 1 413.0 15.0 1.0 0.0 594.3 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000054072 Iigp1 ENSMUST00000235989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024610 Cd74 ENSMUST00000050487 ENSMUSP00000057836 TRANSLATION protein_coding - CCDS50299.1 1 215.0 0.0 2.35 6.0 247.8 1.0 -4,-5 0.4743 6 8.33 MINOR ENSMUSG00000024610 Cd74 ENSMUST00000237097 - NO_TRANSLATION retained_intron ENSMUSG00000024610 Cd74 ENSMUST00000238179 - NO_TRANSLATION retained_intron ENSMUSG00000024610 Cd74 ENSMUST00000097563 ENSMUSP00000095171 TRANSLATION protein_coding - CCDS37835.1 1 279.0 0.0 3.35 7.1 303.0 1.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000019647 Sema6a ENSMUST00000019791 ENSMUSP00000019791 TRANSLATION protein_coding - CCDS37813.1 1 1031.0 0.0 13.35 20.0 473.0 2.0 3,-2 0.925 12 11.6 ALTERNATIVE:1 ENSMUSG00000019647 Sema6a ENSMUST00000151382 - NO_TRANSLATION retained_intron ENSMUSG00000019647 Sema6a ENSMUST00000144223 - NO_TRANSLATION retained_intron ENSMUSG00000019647 Sema6a ENSMUST00000126684 ENSMUSP00000118655 TRANSLATION protein_coding stop - 3 216.0 0.0 6.1 0.0 152.0 0.0 3,-2 0.0 2 -2.0 MINOR ENSMUSG00000019647 Sema6a ENSMUST00000135790 ENSMUSP00000120011 TRANSLATION protein_coding - - 5 1048.0 0.0 13.35 19.9 473.0 2.0 3,-2 0.7691 12 11.584 ALTERNATIVE:1 ENSMUSG00000019647 Sema6a ENSMUST00000141224 - NO_TRANSLATION retained_intron ENSMUSG00000019647 Sema6a ENSMUST00000156422 ENSMUSP00000121442 TRANSLATION protein_coding - CCDS37813.1 5 1031.0 0.0 13.35 20.0 473.0 2.0 3,-2 0.925 12 11.6 ALTERNATIVE:1 ENSMUSG00000019647 Sema6a ENSMUST00000076043 ENSMUSP00000075420 TRANSLATION protein_coding - CCDS79642.1 1 976.0 0.0 13.35 22.1 473.0 2.0 3,-2 1.0 13 12.0 PRINCIPAL:3 ENSMUSG00000019647 Sema6a ENSMUST00000123228 ENSMUSP00000120249 TRANSLATION protein_coding start - 5 111.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005873 Reep5 ENSMUST00000006027 ENSMUSP00000006027 TRANSLATION protein_coding - CCDS50247.1 1 189.0 0.0 4.1 32.3 105.5 3.0 -4,-7 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000005873 Reep5 ENSMUST00000237414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005873 Reep5 ENSMUST00000236887 ENSMUSP00000158434 TRANSLATION protein_coding start - - 103.0 0.0 1.5 0.0 0.0 0.0 -1,1 0.0 4 -2.0 MINOR ENSMUSG00000005873 Reep5 ENSMUST00000235153 ENSMUSP00000158509 TRANSLATION protein_coding stop - - 119.0 0.0 2.0 0.0 68.5 2.0 -4,-7 0.0007 - -2.0 MINOR ENSMUSG00000005873 Reep5 ENSMUST00000235227 ENSMUSP00000158286 TRANSLATION nonsense_mediated_decay start - - 41.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000050996 Cetn1 ENSMUST00000234590 ENSMUSP00000157126 TRANSLATION nonsense_mediated_decay - CCDS37731.1 - 172.0 27.0 1.0 36.9 100.3 0.0 -4,-7 1.0 3 -2.0 MINOR ENSMUSG00000050996 Cetn1 ENSMUST00000234003 ENSMUSP00000157153 TRANSLATION protein_coding - CCDS37731.1 - 172.0 27.0 1.0 36.9 100.3 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000050996 Cetn1 ENSMUST00000062769 ENSMUSP00000057392 TRANSLATION protein_coding - CCDS37731.1 1 172.0 27.0 1.0 36.9 100.3 0.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000024498 Tcerg1 ENSMUST00000236856 - NO_TRANSLATION retained_intron ENSMUSG00000024498 Tcerg1 ENSMUST00000236088 ENSMUSP00000157836 TRANSLATION protein_coding stop - - 779.0 0.0 8.3 0.0 150.9 0.0 -4,-5 0.0102 10 -2.0 MINOR ENSMUSG00000024498 Tcerg1 ENSMUST00000236446 - NO_TRANSLATION retained_intron ENSMUSG00000024498 Tcerg1 ENSMUST00000237646 ENSMUSP00000158174 TRANSLATION nonsense_mediated_decay start - - 61.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024498 Tcerg1 ENSMUST00000236418 ENSMUSP00000157866 TRANSLATION protein_coding start/stop - - 193.0 0.0 2.8 0.0 28.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024498 Tcerg1 ENSMUST00000237901 - NO_TRANSLATION retained_intron ENSMUSG00000024498 Tcerg1 ENSMUST00000237390 ENSMUSP00000157680 TRANSLATION protein_coding start/stop - - 283.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000024498 Tcerg1 ENSMUST00000237162 - NO_TRANSLATION retained_intron ENSMUSG00000024498 Tcerg1 ENSMUST00000237602 ENSMUSP00000158288 TRANSLATION protein_coding - CCDS29214.1 - 1100.0 0.0 13.95 0.0 335.6 0.0 -4,-5 0.7566 23 8.0 ALTERNATIVE:2 ENSMUSG00000024498 Tcerg1 ENSMUST00000173642 ENSMUSP00000134458 TRANSLATION nonsense_mediated_decay - - 1 1034.0 0.0 12.95 0.0 287.0 0.0 -4,-5 0.1104 18 -2.0 MINOR ENSMUSG00000024498 Tcerg1 ENSMUST00000025375 ENSMUSP00000025375 TRANSLATION protein_coding - - 1 1079.0 0.0 13.95 0.0 335.6 0.0 -4,-5 0.9425 23 8.0 PRINCIPAL:4 ENSMUSG00000103897 Pcdhga8 ENSMUST00000066149 ENSMUSP00000067728 TRANSLATION protein_coding - CCDS37782.1 1 932.0 53.0 1.0 0.0 525.2 0.0 -2,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000051375 Pcdh1 ENSMUST00000160721 ENSMUSP00000124732 TRANSLATION protein_coding - - 5 360.0 20.0 2.4 0.0 83.4 0.0 1,-2 0.0017 7 5.142 MINOR ENSMUSG00000051375 Pcdh1 ENSMUST00000193828 ENSMUSP00000142328 TRANSLATION protein_coding stop - 3 60.0 0.0 0.0 0.0 0.0 0.0 -1,1 0.0 - -2.0 MINOR ENSMUSG00000051375 Pcdh1 ENSMUST00000057185 ENSMUSP00000055199 TRANSLATION protein_coding - CCDS29197.1 1 1038.0 69.0 2.8 0.0 659.5 1.0 1,-2 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000051375 Pcdh1 ENSMUST00000159405 ENSMUSP00000125309 TRANSLATION protein_coding - CCDS29197.1 5 1038.0 69.0 2.8 0.0 659.5 1.0 1,-2 1.0 19 18.0 PRINCIPAL:1 ENSMUSG00000051375 Pcdh1 ENSMUST00000161701 ENSMUSP00000125576 TRANSLATION protein_coding start - 5 1077.0 64.0 1.8 0.0 629.6 1.0 -4,-5 0.1437 21 -2.0 MINOR ENSMUSG00000051375 Pcdh1 ENSMUST00000194312 ENSMUSP00000141877 TRANSLATION protein_coding stop - 3 45.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0028 - -2.0 MINOR ENSMUSG00000024535 Snx24 ENSMUST00000235675 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024535 Snx24 ENSMUST00000165032 ENSMUSP00000131423 TRANSLATION protein_coding - CCDS29251.1 1 169.0 0.0 3.5 25.1 57.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000024535 Snx24 ENSMUST00000236830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024535 Snx24 ENSMUST00000025417 ENSMUSP00000025417 TRANSLATION protein_coding - CCDS29251.1 1 169.0 0.0 3.5 25.1 57.9 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000024427 Spry4 ENSMUST00000025295 ENSMUSP00000025295 TRANSLATION protein_coding - CCDS29202.1 1 300.0 3.0 0.8 20.7 114.6 0.0 -4,-7 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000079614 Seh1l ENSMUST00000237700 ENSMUSP00000157877 TRANSLATION protein_coding - - - 357.0 2.0 7.1 21.9 44.1 0.0 -4,-5 0.8541 12 13.62 ALTERNATIVE:1 ENSMUSG00000079614 Seh1l ENSMUST00000025421 ENSMUSP00000025421 TRANSLATION protein_coding - CCDS50312.1 1 360.0 2.0 7.1 24.1 44.1 0.0 -4,-5 1.0 12 14.0 PRINCIPAL:4 ENSMUSG00000032656 Marchf3 ENSMUST00000153044 - NO_TRANSLATION retained_intron ENSMUSG00000032656 Marchf3 ENSMUST00000102912 ENSMUSP00000099976 TRANSLATION protein_coding - CCDS29262.1 1 218.0 8.0 2.066 0.0 55.7 3.0 -4,-5 0.0649 2 16.134 MINOR ENSMUSG00000032656 Marchf3 ENSMUST00000035278 ENSMUSP00000047946 TRANSLATION protein_coding - - 3 253.0 8.0 3.0 29.9 55.7 4.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000068606 Gm4841 ENSMUST00000090260 ENSMUSP00000087727 TRANSLATION protein_coding - CCDS50296.1 2 417.0 13.0 1.0 0.0 422.3 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000024532 1700034E13Rik ENSMUST00000118724 ENSMUSP00000112845 TRANSLATION protein_coding - CCDS29249.1 1 108.0 3.0 1.8 3.2 74.2 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024532 1700034E13Rik ENSMUST00000091904 ENSMUSP00000089518 TRANSLATION protein_coding - CCDS29249.1 1 108.0 3.0 1.8 3.2 74.2 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000090000 Ier3ip1 ENSMUST00000026487 ENSMUSP00000026487 TRANSLATION protein_coding - CCDS37862.1 1 82.0 0.0 0.0 30.0 106.7 0.0 1,-3 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000090000 Ier3ip1 ENSMUST00000128679 - NO_TRANSLATION retained_intron ENSMUSG00000090000 Ier3ip1 ENSMUST00000136800 ENSMUSP00000157745 TRANSLATION protein_coding - - 3 93.0 0.0 0.0 0.0 40.6 0.0 1,-3 0.0044 - 2.034 MINOR ENSMUSG00000090000 Ier3ip1 ENSMUST00000152369 - NO_TRANSLATION retained_intron ENSMUSG00000024604 Rbm22 ENSMUST00000160020 - NO_TRANSLATION retained_intron ENSMUSG00000024604 Rbm22 ENSMUST00000025506 ENSMUSP00000025506 TRANSLATION protein_coding - CCDS29272.1 1 420.0 4.0 6.08 35.5 41.1 0.0 -4,-5 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000024604 Rbm22 ENSMUST00000160353 - NO_TRANSLATION retained_intron ENSMUSG00000024604 Rbm22 ENSMUST00000161544 - NO_TRANSLATION retained_intron ENSMUSG00000024604 Rbm22 ENSMUST00000159203 - NO_TRANSLATION retained_intron ENSMUSG00000024516 Sec11c ENSMUST00000139538 - NO_TRANSLATION retained_intron ENSMUSG00000024516 Sec11c ENSMUST00000153193 ENSMUSP00000122547 TRANSLATION protein_coding - - 3 206.0 0.0 4.83 0.0 0.0 1.0 -4,-7 0.0386 7 6.0 MINOR ENSMUSG00000024516 Sec11c ENSMUST00000126432 ENSMUSP00000122624 TRANSLATION nonsense_mediated_decay - - 1 99.0 0.0 1.915 0.0 0.0 1.0 -4,-7 0.0091 4 -2.0 MINOR ENSMUSG00000024516 Sec11c ENSMUST00000025394 ENSMUSP00000025394 TRANSLATION protein_coding - CCDS29309.1 1 192.0 0.0 4.83 9.2 0.0 1.0 -4,-7 1.0 7 9.0 PRINCIPAL:1 ENSMUSG00000024516 Sec11c ENSMUST00000235411 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024516 Sec11c ENSMUST00000235959 - NO_TRANSLATION retained_intron ENSMUSG00000024516 Sec11c ENSMUST00000155668 - NO_TRANSLATION retained_intron ENSMUSG00000024516 Sec11c ENSMUST00000125552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024516 Sec11c ENSMUST00000236847 ENSMUSP00000158224 TRANSLATION protein_coding - - - 142.0 0.0 3.33 1.1 0.0 1.0 -4,-7 0.0898 3 3.036 MINOR ENSMUSG00000024516 Sec11c ENSMUST00000235765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024516 Sec11c ENSMUST00000126651 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000103749 Pcdhgb5 ENSMUST00000193006 - NO_TRANSLATION retained_intron ENSMUSG00000103749 Pcdhgb5 ENSMUST00000192535 ENSMUSP00000142010 TRANSLATION protein_coding - CCDS79631.1 1 926.0 53.0 1.0 0.0 519.6 0.0 0,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000052026 Slc6a7 ENSMUST00000025520 ENSMUSP00000025520 TRANSLATION protein_coding - CCDS29278.1 1 637.0 9.0 10.64 16.2 762.4 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000052026 Slc6a7 ENSMUST00000236893 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090451 Gm6133 ENSMUST00000164064 ENSMUSP00000128489 TRANSLATION protein_coding - - - 190.0 0.0 1.0 0.0 138.0 0.0 -4,-5 0.7897 - 12.0 PRINCIPAL:1 ENSMUSG00000047161 Chst9 ENSMUST00000130553 ENSMUSP00000121484 TRANSLATION nonsense_mediated_decay - - 1 51.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0028 - -2.0 MINOR ENSMUSG00000047161 Chst9 ENSMUST00000053017 ENSMUSP00000049975 TRANSLATION protein_coding - CCDS29074.1 1 413.0 0.0 0.48 0.1 205.2 0.0 2,-3 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000056130 Ticam2 ENSMUST00000149929 - NO_TRANSLATION retained_intron ENSMUSG00000056130 Ticam2 ENSMUST00000070084 ENSMUSP00000066239 TRANSLATION protein_coding - CCDS29232.1 1 232.0 0.0 1.0 7.5 33.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024376 Epb41l4a ENSMUST00000025234 ENSMUSP00000025234 TRANSLATION protein_coding - CCDS29124.1 1 686.0 0.0 7.81 12.9 254.9 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000024376 Epb41l4a ENSMUST00000236514 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024376 Epb41l4a ENSMUST00000235393 - NO_TRANSLATION retained_intron ENSMUSG00000024376 Epb41l4a ENSMUST00000235242 - NO_TRANSLATION retained_intron ENSMUSG00000024376 Epb41l4a ENSMUST00000235876 - NO_TRANSLATION retained_intron ENSMUSG00000024376 Epb41l4a ENSMUST00000237971 - NO_TRANSLATION retained_intron ENSMUSG00000024376 Epb41l4a ENSMUST00000236716 - NO_TRANSLATION retained_intron ENSMUSG00000024581 Napg ENSMUST00000025474 ENSMUSP00000025474 TRANSLATION protein_coding - CCDS29295.1 1 312.0 0.0 8.26 31.6 94.8 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000024581 Napg ENSMUST00000137849 - NO_TRANSLATION retained_intron ENSMUSG00000024581 Napg ENSMUST00000236193 - NO_TRANSLATION retained_intron ENSMUSG00000024581 Napg ENSMUST00000236914 - NO_TRANSLATION retained_intron ENSMUSG00000024581 Napg ENSMUST00000133593 - NO_TRANSLATION retained_intron ENSMUSG00000024581 Napg ENSMUST00000236925 ENSMUSP00000157905 TRANSLATION protein_coding - - - 230.0 0.0 5.6 3.8 59.9 0.0 -4,-5 0.0365 13 4.838 MINOR ENSMUSG00000024581 Napg ENSMUST00000150267 ENSMUSP00000122681 TRANSLATION protein_coding stop - 5 353.0 0.0 7.26 0.0 72.1 0.0 -4,-5 0.0044 15 -2.0 MINOR ENSMUSG00000024581 Napg ENSMUST00000237483 ENSMUSP00000158445 TRANSLATION protein_coding stop - - 38.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024581 Napg ENSMUST00000126870 - NO_TRANSLATION retained_intron ENSMUSG00000024581 Napg ENSMUST00000235372 ENSMUSP00000158047 TRANSLATION protein_coding - - - 225.0 0.0 5.6 1.0 59.2 0.0 -4,-5 0.0005 12 4.422 MINOR ENSMUSG00000024581 Napg ENSMUST00000155440 - NO_TRANSLATION retained_intron ENSMUSG00000024581 Napg ENSMUST00000236087 ENSMUSP00000158195 TRANSLATION nonsense_mediated_decay - - - 87.0 0.0 2.198 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024581 Napg ENSMUST00000235974 - NO_TRANSLATION retained_intron ENSMUSG00000024581 Napg ENSMUST00000154563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024581 Napg ENSMUST00000237864 ENSMUSP00000158265 TRANSLATION nonsense_mediated_decay - - - 87.0 0.0 2.198 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024581 Napg ENSMUST00000124837 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024581 Napg ENSMUST00000237157 ENSMUSP00000157937 TRANSLATION nonsense_mediated_decay - - - 48.0 0.0 1.448 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000056162 Cndp1 ENSMUST00000130579 - NO_TRANSLATION retained_intron ENSMUSG00000056162 Cndp1 ENSMUST00000236714 ENSMUSP00000157579 TRANSLATION protein_coding stop - - 74.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056162 Cndp1 ENSMUST00000236723 - NO_TRANSLATION retained_intron ENSMUSG00000056162 Cndp1 ENSMUST00000070139 ENSMUSP00000069699 TRANSLATION protein_coding - CCDS29382.1 1 492.0 6.0 10.25 0.1 163.8 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000056162 Cndp1 ENSMUST00000145981 - NO_TRANSLATION retained_intron ENSMUSG00000056162 Cndp1 ENSMUST00000235618 - NO_TRANSLATION retained_intron ENSMUSG00000024542 Cep192 ENSMUST00000225681 - NO_TRANSLATION retained_intron ENSMUSG00000024542 Cep192 ENSMUST00000224387 - NO_TRANSLATION retained_intron ENSMUSG00000024542 Cep192 ENSMUST00000224921 - NO_TRANSLATION retained_intron ENSMUSG00000024542 Cep192 ENSMUST00000225580 - NO_TRANSLATION retained_intron ENSMUSG00000024542 Cep192 ENSMUST00000025425 ENSMUSP00000025425 TRANSLATION protein_coding - CCDS50313.1 5 2514.0 0.0 4.35 0.0 0.0 0.0 -4,-5 1.0 24 6.0 PRINCIPAL:1 ENSMUSG00000024542 Cep192 ENSMUST00000223715 - NO_TRANSLATION retained_intron ENSMUSG00000024542 Cep192 ENSMUST00000223571 - NO_TRANSLATION retained_intron ENSMUSG00000024542 Cep192 ENSMUST00000225677 - NO_TRANSLATION retained_intron ENSMUSG00000024542 Cep192 ENSMUST00000225589 - NO_TRANSLATION retained_intron ENSMUSG00000024542 Cep192 ENSMUST00000225303 ENSMUSP00000153461 TRANSLATION nonsense_mediated_decay start - - 1105.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.1547 6 -2.0 MINOR ENSMUSG00000024542 Cep192 ENSMUST00000224817 - NO_TRANSLATION retained_intron ENSMUSG00000024542 Cep192 ENSMUST00000225077 - NO_TRANSLATION retained_intron ENSMUSG00000056671 Prelid2 ENSMUST00000235606 ENSMUSP00000157706 TRANSLATION protein_coding - CCDS37794.1 - 177.0 0.0 4.75 23.2 162.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000056671 Prelid2 ENSMUST00000070949 ENSMUSP00000064661 TRANSLATION protein_coding - - 1 174.0 0.0 4.25 0.0 147.9 0.0 -4,-5 0.01 1 10.11 MINOR ENSMUSG00000056671 Prelid2 ENSMUST00000236542 - NO_TRANSLATION retained_intron ENSMUSG00000024293 Esco1 ENSMUST00000234090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024293 Esco1 ENSMUST00000115864 ENSMUSP00000111530 TRANSLATION protein_coding - - 1 319.0 4.0 5.25 0.0 158.5 0.0 -4,-7 0.0285 - 12.0 ALTERNATIVE:2 ENSMUSG00000024293 Esco1 ENSMUST00000145320 ENSMUSP00000157069 TRANSLATION protein_coding - - 1 217.0 2.0 4.75 1.1 104.9 0.0 -4,-5 0.0416 - 8.038 MINOR ENSMUSG00000024293 Esco1 ENSMUST00000097670 ENSMUSP00000095274 TRANSLATION protein_coding - - 1 344.0 4.0 5.25 1.0 158.5 0.0 -4,-5 0.2686 - 12.0 ALTERNATIVE:2 ENSMUSG00000024293 Esco1 ENSMUST00000025142 ENSMUSP00000025142 TRANSLATION protein_coding - CCDS37737.1 1 843.0 4.0 5.25 3.5 158.5 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:2 ENSMUSG00000024293 Esco1 ENSMUST00000234347 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024293 Esco1 ENSMUST00000234151 - NO_TRANSLATION retained_intron ENSMUSG00000024293 Esco1 ENSMUST00000234550 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024293 Esco1 ENSMUST00000127099 ENSMUSP00000157382 TRANSLATION nonsense_mediated_decay - - 1 690.0 4.0 1.25 0.0 53.6 0.0 -4,-5 0.0016 3 -2.0 MINOR ENSMUSG00000024306 Ccdc178 ENSMUST00000234661 ENSMUSP00000157287 TRANSLATION protein_coding stop - - 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0296 - -2.0 MINOR ENSMUSG00000024306 Ccdc178 ENSMUST00000025160 ENSMUSP00000025160 TRANSLATION protein_coding - CCDS29092.1 1 866.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.9352 - 0.0 PRINCIPAL:1 ENSMUSG00000024306 Ccdc178 ENSMUST00000234736 ENSMUSP00000157323 TRANSLATION protein_coding - CCDS29092.1 - 866.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.9352 - 0.0 PRINCIPAL:1 ENSMUSG00000024306 Ccdc178 ENSMUST00000115837 ENSMUSP00000111503 TRANSLATION protein_coding - CCDS29092.1 1 866.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.9352 - 0.0 PRINCIPAL:1 ENSMUSG00000006050 Sra1 ENSMUST00000173202 - NO_TRANSLATION retained_intron ENSMUSG00000006050 Sra1 ENSMUST00000173875 ENSMUSP00000133360 TRANSLATION protein_coding - CCDS29156.2 1 232.0 0.0 2.8 0.0 227.7 0.0 -4,-5 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000006050 Sra1 ENSMUST00000006209 ENSMUSP00000006209 TRANSLATION protein_coding start - 5 223.0 0.0 2.8 0.0 214.9 0.0 -4,-5 0.0568 6 -2.0 MINOR ENSMUSG00000006050 Sra1 ENSMUST00000173482 ENSMUSP00000134589 TRANSLATION nonsense_mediated_decay start - 5 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006050 Sra1 ENSMUST00000236330 ENSMUSP00000158432 TRANSLATION protein_coding start - - 184.0 0.0 2.8 0.0 227.7 0.0 -4,-5 0.0292 4 -2.0 MINOR ENSMUSG00000006050 Sra1 ENSMUST00000174125 - NO_TRANSLATION retained_intron ENSMUSG00000032818 Loxhd1 ENSMUST00000123166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032818 Loxhd1 ENSMUST00000035501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032818 Loxhd1 ENSMUST00000096547 ENSMUSP00000094294 TRANSLATION protein_coding - CCDS50326.1 1 2068.0 0.0 8.5 2.6 932.6 0.0 -4,-5 0.67 - 10.902 MINOR ENSMUSG00000032818 Loxhd1 ENSMUST00000148341 ENSMUSP00000114988 TRANSLATION protein_coding - - 5 2216.0 0.0 8.5 4.7 965.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032818 Loxhd1 ENSMUST00000123410 ENSMUSP00000120991 TRANSLATION protein_coding - - 5 2080.0 0.0 7.7 0.0 894.8 0.0 -4,-5 0.1328 - 6.168 MINOR ENSMUSG00000103585 Pcdhgb4 ENSMUST00000195069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000103585 Pcdhgb4 ENSMUST00000195363 ENSMUSP00000142227 TRANSLATION protein_coding - CCDS79630.1 1 912.0 51.0 1.0 0.0 507.6 0.0 0,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000091539 Vmn1r238 ENSMUST00000165255 ENSMUSP00000129804 TRANSLATION protein_coding - CCDS50208.1 - 306.0 0.0 0.2 0.4 110.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044719 E230025N22Rik ENSMUST00000235134 - NO_TRANSLATION retained_intron ENSMUSG00000044719 E230025N22Rik ENSMUST00000115682 ENSMUSP00000111346 TRANSLATION protein_coding - CCDS37771.1 1 482.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.8898 - 0.0 PRINCIPAL:1 ENSMUSG00000032735 Ablim3 ENSMUST00000166783 ENSMUSP00000125836 TRANSLATION protein_coding - CCDS37839.1 1 682.0 30.0 7.52 19.8 715.8 0.0 -4,-6 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000032735 Ablim3 ENSMUST00000049378 ENSMUSP00000041243 TRANSLATION protein_coding - CCDS37839.1 1 682.0 30.0 7.52 19.8 715.8 0.0 -4,-6 1.0 20 22.0 PRINCIPAL:1 ENSMUSG00000024234 Mtpap ENSMUST00000234924 ENSMUSP00000156990 TRANSLATION protein_coding start - - 338.0 14.0 5.08 0.0 0.0 0.0 -4,-6 0.0154 7 -2.0 MINOR ENSMUSG00000024234 Mtpap ENSMUST00000025077 ENSMUSP00000025077 TRANSLATION protein_coding - CCDS37718.1 1 585.0 19.0 8.774 10.3 0.0 0.0 -4,0 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000024234 Mtpap ENSMUST00000234422 ENSMUSP00000157305 TRANSLATION nonsense_mediated_decay - - - 117.0 0.0 1.0 0.0 0.0 0.0 -4,0 0.0112 1 -2.0 MINOR ENSMUSG00000024234 Mtpap ENSMUST00000234186 ENSMUSP00000157237 TRANSLATION nonsense_mediated_decay - - - 218.0 0.0 2.194 0.0 0.0 0.0 -4,0 0.0134 3 -2.0 MINOR ENSMUSG00000024234 Mtpap ENSMUST00000234614 - NO_TRANSLATION retained_intron ENSMUSG00000024234 Mtpap ENSMUST00000235025 - NO_TRANSLATION retained_intron ENSMUSG00000054477 Kcnn2 ENSMUST00000211323 ENSMUSP00000148153 TRANSLATION protein_coding - CCDS84380.1 1 574.0 0.0 7.48 0.0 343.5 4.0 -4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000054477 Kcnn2 ENSMUST00000167895 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054477 Kcnn2 ENSMUST00000235217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054477 Kcnn2 ENSMUST00000183850 ENSMUSP00000139350 TRANSLATION protein_coding - CCDS84380.1 1 574.0 0.0 7.48 0.0 343.5 4.0 -4,-1 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000054477 Kcnn2 ENSMUST00000183897 - NO_TRANSLATION retained_intron ENSMUSG00000054477 Kcnn2 ENSMUST00000236405 ENSMUSP00000158371 TRANSLATION protein_coding start - - 78.0 0.0 1.85 0.0 39.1 2.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000054477 Kcnn2 ENSMUST00000183623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054477 Kcnn2 ENSMUST00000184101 - NO_TRANSLATION retained_intron ENSMUSG00000024561 Mbd1 ENSMUST00000237568 - NO_TRANSLATION retained_intron ENSMUSG00000024561 Mbd1 ENSMUST00000239157 ENSMUSP00000159055 TRANSLATION protein_coding - - - 613.0 20.0 3.6 0.0 141.6 0.0 -4,-5 0.0206 7 7.782 MINOR ENSMUSG00000024561 Mbd1 ENSMUST00000224159 - NO_TRANSLATION retained_intron ENSMUSG00000024561 Mbd1 ENSMUST00000224047 ENSMUSP00000153428 TRANSLATION protein_coding - - - 644.0 28.0 4.6 0.0 189.7 0.0 -4,-5 0.7813 9 18.0 PRINCIPAL:1 ENSMUSG00000024561 Mbd1 ENSMUST00000224907 - NO_TRANSLATION retained_intron ENSMUSG00000024561 Mbd1 ENSMUST00000224332 ENSMUSP00000153085 TRANSLATION protein_coding start - - 467.0 20.0 1.4 0.0 76.5 0.0 -1,-4 0.0 6 -2.0 MINOR ENSMUSG00000024561 Mbd1 ENSMUST00000097530 ENSMUSP00000095137 TRANSLATION protein_coding - CCDS50321.1 1 588.0 20.0 3.6 0.0 141.6 0.0 -4,-5 0.0235 7 7.782 MINOR ENSMUSG00000110277 Gm45871 ENSMUST00000209821 - NO_TRANSLATION retained_intron ENSMUSG00000110277 Gm45871 ENSMUST00000209969 ENSMUSP00000147882 TRANSLATION protein_coding - - 5 187.0 0.0 2.0 0.0 71.8 0.0 -4,-5 0.0 - 3.852 MINOR ENSMUSG00000110277 Gm45871 ENSMUST00000210766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000110277 Gm45871 ENSMUST00000211710 ENSMUSP00000147542 TRANSLATION protein_coding - - 3 540.0 59.0 3.075 0.0 351.1 0.0 -4,-5 0.8104 - 18.0 PRINCIPAL:1 ENSMUSG00000024388 Myo7b ENSMUST00000134663 ENSMUSP00000118046 TRANSLATION protein_coding - CCDS50244.1 1 2113.0 17.0 33.704 1.0 1130.8 0.0 -4,-5 1.0 58 18.0 PRINCIPAL:1 ENSMUSG00000024388 Myo7b ENSMUST00000238990 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024512 Dynap ENSMUST00000025390 ENSMUSP00000025390 TRANSLATION protein_coding - CCDS50316.1 1 161.0 0.0 0.0 0.4 48.0 0.0 -4,-6 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000024386 Proc ENSMUST00000171765 ENSMUSP00000132226 TRANSLATION protein_coding - CCDS29116.1 5 460.0 20.0 6.18 6.0 364.0 0.0 3,-2 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000024386 Proc ENSMUST00000234375 ENSMUSP00000157207 TRANSLATION protein_coding stop - - 177.0 17.0 3.43 0.0 140.0 0.0 3,-2 0.0012 2 -2.0 MINOR ENSMUSG00000024386 Proc ENSMUST00000234746 ENSMUSP00000157002 TRANSLATION nonsense_mediated_decay - - - 51.0 0.0 0.0 0.0 0.0 0.0 2,-3 0.0 - -2.0 MINOR ENSMUSG00000024386 Proc ENSMUST00000234386 ENSMUSP00000157122 TRANSLATION protein_coding stop - - 214.0 17.0 3.68 0.0 140.0 0.0 3,-2 0.0012 4 -2.0 MINOR ENSMUSG00000024386 Proc ENSMUST00000234198 - NO_TRANSLATION retained_intron ENSMUSG00000024386 Proc ENSMUST00000234657 ENSMUSP00000156986 TRANSLATION protein_coding stop - - 86.0 12.0 1.43 0.0 72.3 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000024386 Proc ENSMUST00000234651 ENSMUSP00000157269 TRANSLATION protein_coding - CCDS29116.1 - 460.0 20.0 6.18 6.0 364.0 0.0 3,-2 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000024386 Proc ENSMUST00000234649 - NO_TRANSLATION retained_intron ENSMUSG00000024238 Zeb1 ENSMUST00000175925 ENSMUSP00000135125 TRANSLATION nonsense_mediated_decay - - 5 105.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000024238 Zeb1 ENSMUST00000175739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024238 Zeb1 ENSMUST00000224200 ENSMUSP00000157056 TRANSLATION nonsense_mediated_decay - - - 37.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000024238 Zeb1 ENSMUST00000160522 - NO_TRANSLATION retained_intron ENSMUSG00000024238 Zeb1 ENSMUST00000025081 ENSMUSP00000025081 TRANSLATION protein_coding - CCDS29039.1 1 1117.0 25.0 3.266 0.1 111.4 0.0 -4,-7 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000024238 Zeb1 ENSMUST00000177030 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024238 Zeb1 ENSMUST00000162892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024238 Zeb1 ENSMUST00000160910 ENSMUSP00000124815 TRANSLATION protein_coding stop - 3 154.0 3.0 0.066 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024238 Zeb1 ENSMUST00000159390 ENSMUSP00000124395 TRANSLATION protein_coding stop - 3 293.0 14.0 2.7 0.0 77.1 0.0 -4,-7 0.0014 2 -2.0 MINOR ENSMUSG00000024238 Zeb1 ENSMUST00000177070 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024238 Zeb1 ENSMUST00000161295 ENSMUSP00000124507 TRANSLATION nonsense_mediated_decay start - 5 20.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000024238 Zeb1 ENSMUST00000159477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045991 Onecut2 ENSMUST00000175965 ENSMUSP00000135692 TRANSLATION protein_coding - CCDS29302.2 1 505.0 0.0 1.2 4.6 144.8 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000047466 Ark2n ENSMUST00000235641 - NO_TRANSLATION retained_intron ENSMUSG00000047466 Ark2n ENSMUST00000237203 ENSMUSP00000158108 TRANSLATION protein_coding - CCDS29355.1 - 399.0 0.0 0.0 10.9 147.8 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000047466 Ark2n ENSMUST00000074653 ENSMUSP00000074225 TRANSLATION protein_coding - CCDS29355.1 1 399.0 0.0 0.0 10.9 147.8 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000060534 Dcc ENSMUST00000073379 ENSMUSP00000073094 TRANSLATION protein_coding - - 5 1427.0 0.0 19.716 12.4 824.2 1.0 0,-3 0.7835 18 14.004 MINOR ENSMUSG00000060534 Dcc ENSMUST00000126030 - NO_TRANSLATION retained_intron ENSMUSG00000060534 Dcc ENSMUST00000114943 ENSMUSP00000110593 TRANSLATION protein_coding - CCDS29336.1 1 1447.0 0.0 20.166 16.7 824.2 1.0 0,-3 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000007440 Pcdha10 ENSMUST00000115658 ENSMUSP00000111322 TRANSLATION protein_coding - CCDS37778.1 1 946.0 50.0 1.0 0.4 549.1 0.0 1,-3 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000057766 Ankrd29 ENSMUST00000142066 ENSMUSP00000119314 TRANSLATION protein_coding stop - 3 88.0 0.0 2.764 0.0 46.5 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000057766 Ankrd29 ENSMUST00000234183 ENSMUSP00000156996 TRANSLATION protein_coding - - - 272.0 0.0 8.514 0.4 140.5 0.0 -4,-7 0.0069 9 8.832 MINOR ENSMUSG00000057766 Ankrd29 ENSMUST00000137948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057766 Ankrd29 ENSMUST00000122408 ENSMUSP00000112888 TRANSLATION protein_coding - - 5 276.0 0.0 8.514 0.1 134.2 0.0 -4,-7 0.0041 9 8.454 MINOR ENSMUSG00000057766 Ankrd29 ENSMUST00000234405 ENSMUSP00000157141 TRANSLATION nonsense_mediated_decay start - - 99.0 0.0 2.6 0.0 49.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000057766 Ankrd29 ENSMUST00000118525 ENSMUSP00000114028 TRANSLATION protein_coding - CCDS50221.1 1 309.0 0.0 9.514 0.1 160.0 0.0 -4,-7 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000057766 Ankrd29 ENSMUST00000234212 ENSMUSP00000157031 TRANSLATION protein_coding start/stop - - 202.0 0.0 6.25 0.0 110.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000103310 Pcdha12 ENSMUST00000047614 ENSMUSP00000047609 TRANSLATION protein_coding - CCDS29166.1 1 950.0 55.0 1.0 4.6 557.0 0.0 2,-2 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000069385 Gm10267 ENSMUST00000181652 ENSMUSP00000137781 TRANSLATION protein_coding - CCDS70890.1 5 85.0 0.0 2.75 0.1 50.8 0.0 -1,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000117621 Hspe1-rs1 ENSMUST00000234633 ENSMUSP00000157281 TRANSLATION protein_coding - - - 102.0 0.0 1.0 24.8 102.0 0.0 -2,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040018 Cox15 ENSMUST00000045562 ENSMUSP00000041820 TRANSLATION protein_coding - CCDS29836.1 1 413.0 0.0 0.0 15.5 368.5 0.0 -4,0 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000040018 Cox15 ENSMUST00000129242 - NO_TRANSLATION retained_intron ENSMUSG00000047379 B4gat1 ENSMUST00000053705 ENSMUSP00000062016 TRANSLATION protein_coding - CCDS29446.1 1 415.0 0.0 0.7 11.0 344.3 0.0 1,-3 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000047379 B4gat1 ENSMUST00000235776 ENSMUSP00000157645 TRANSLATION protein_coding - - - 379.0 0.0 0.2 0.0 262.6 0.0 1,-3 0.0033 6 2.814 MINOR ENSMUSG00000024818 Slc25a45 ENSMUST00000136833 ENSMUSP00000121602 TRANSLATION protein_coding stop - 3 117.0 0.0 2.23 0.0 57.4 3.0 -3,-5 0.0016 1 -2.0 MINOR ENSMUSG00000024818 Slc25a45 ENSMUST00000155697 ENSMUSP00000121596 TRANSLATION protein_coding - CCDS29482.1 1 288.0 9.0 5.49 18.3 214.8 6.0 -3,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000024818 Slc25a45 ENSMUST00000145200 ENSMUSP00000117220 TRANSLATION protein_coding stop - 3 195.0 9.0 2.66 0.0 110.5 5.0 -1,-4 0.0021 3 -2.0 MINOR ENSMUSG00000024818 Slc25a45 ENSMUST00000141362 ENSMUSP00000114648 TRANSLATION protein_coding start - 3 121.0 0.0 1.664 0.0 44.8 1.0 -3,-5 0.0015 1 -2.0 MINOR ENSMUSG00000024818 Slc25a45 ENSMUST00000025732 ENSMUSP00000025732 TRANSLATION protein_coding - CCDS29482.1 1 288.0 9.0 5.49 18.3 214.8 6.0 -3,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000024818 Slc25a45 ENSMUST00000125114 ENSMUSP00000122076 TRANSLATION protein_coding - - 1 212.0 4.0 3.74 0.0 140.0 5.0 -3,-6 0.0025 4 6.678 MINOR ENSMUSG00000024818 Slc25a45 ENSMUST00000235340 ENSMUSP00000158189 TRANSLATION protein_coding - - - 230.0 9.0 3.66 1.2 147.0 5.0 -1,-4 0.0137 5 10.32 MINOR ENSMUSG00000024936 Kcnk7 ENSMUST00000052448 ENSMUSP00000051278 TRANSLATION protein_coding - CCDS29477.1 1 343.0 0.0 1.3 0.0 85.9 4.0 0,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024936 Kcnk7 ENSMUST00000235419 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024936 Kcnk7 ENSMUST00000236818 ENSMUSP00000157581 TRANSLATION protein_coding - - - 233.0 0.0 0.7 0.0 40.3 3.0 -1,-3 0.0023 - 6.042 MINOR ENSMUSG00000053080 Zfta ENSMUST00000191580 ENSMUSP00000140369 TRANSLATION nonsense_mediated_decay start - 5 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0222 - -2.0 MINOR ENSMUSG00000053080 Zfta ENSMUST00000161907 ENSMUSP00000139847 TRANSLATION protein_coding start - 2 311.0 4.0 0.2 0.0 0.0 0.0 -4,-2 0.1396 1 -2.0 MINOR ENSMUSG00000053080 Zfta ENSMUST00000159348 ENSMUSP00000123773 TRANSLATION protein_coding - CCDS29524.2 5 678.0 8.0 0.2 1.4 0.0 0.0 -4,-6 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000053080 Zfta ENSMUST00000160561 - NO_TRANSLATION retained_intron ENSMUSG00000053080 Zfta ENSMUST00000159346 ENSMUSP00000124442 TRANSLATION protein_coding start/stop - 5 274.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0377 - -2.0 MINOR ENSMUSG00000053080 Zfta ENSMUST00000189779 - NO_TRANSLATION retained_intron ENSMUSG00000003228 Grk5 ENSMUST00000236876 ENSMUSP00000157698 TRANSLATION protein_coding - - - 125.0 0.0 3.3 0.0 35.5 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000003228 Grk5 ENSMUST00000003313 ENSMUSP00000003313 TRANSLATION protein_coding - CCDS29945.1 1 590.0 17.0 13.5 22.9 296.3 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000003228 Grk5 ENSMUST00000235623 - NO_TRANSLATION retained_intron ENSMUSG00000024769 Cdc42bpg ENSMUST00000141854 - NO_TRANSLATION retained_intron ENSMUSG00000024769 Cdc42bpg ENSMUST00000025681 ENSMUSP00000025681 TRANSLATION protein_coding - CCDS50365.1 5 1551.0 17.0 7.8 3.6 488.3 0.0 -4,-5 1.0 34 19.0 PRINCIPAL:1 ENSMUSG00000024993 Dennd10 ENSMUST00000119633 ENSMUSP00000112839 TRANSLATION protein_coding - CCDS84460.1 1 236.0 0.0 6.08 5.1 27.7 0.0 -4,-5 0.4904 6 7.821 MINOR ENSMUSG00000024993 Dennd10 ENSMUST00000147049 - NO_TRANSLATION retained_intron ENSMUSG00000024993 Dennd10 ENSMUST00000148577 ENSMUSP00000121853 TRANSLATION nonsense_mediated_decay - - 3 93.0 0.0 1.4 0.0 0.0 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000024993 Dennd10 ENSMUST00000025957 ENSMUSP00000025957 TRANSLATION protein_coding - CCDS29942.1 1 357.0 0.0 8.56 11.7 29.5 0.0 -4,-7 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000024993 Dennd10 ENSMUST00000142375 - NO_TRANSLATION retained_intron ENSMUSG00000024993 Dennd10 ENSMUST00000128357 ENSMUSP00000118461 TRANSLATION protein_coding stop - 3 136.0 0.0 3.75 0.0 29.5 0.0 -4,-5 0.0014 3 -2.0 MINOR ENSMUSG00000024993 Dennd10 ENSMUST00000136146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024682 Cblif ENSMUST00000025585 ENSMUSP00000025585 TRANSLATION protein_coding - CCDS29609.1 1 417.0 0.0 6.83 9.6 380.8 0.0 3,-2 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000090291 Lrrc10b ENSMUST00000171400 ENSMUSP00000132865 TRANSLATION protein_coding - CCDS50389.1 - 292.0 0.0 1.0 6.4 32.5 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000024911 Fibp ENSMUST00000225222 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000225917 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000237181 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000235533 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000237258 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000224422 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000238011 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000224944 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000225796 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000226017 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000225141 ENSMUSP00000153409 TRANSLATION protein_coding - - - 357.0 0.0 0.0 29.0 568.2 0.0 -4,-5 0.9346 8 6.0 ALTERNATIVE:1 ENSMUSG00000024911 Fibp ENSMUST00000224005 - NO_TRANSLATION retained_intron ENSMUSG00000024911 Fibp ENSMUST00000025847 ENSMUSP00000025847 TRANSLATION protein_coding - CCDS57130.1 1 364.0 0.0 0.0 26.8 561.7 0.0 -4,-5 1.0 8 5.684 PRINCIPAL:4 ENSMUSG00000062624 Cyp2c67 ENSMUST00000067328 ENSMUSP00000065796 TRANSLATION protein_coding - CCDS29796.1 1 491.0 32.0 8.8 9.2 499.4 0.0 2,-3 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000062376 Borcs7 ENSMUST00000074912 ENSMUSP00000074447 TRANSLATION protein_coding - CCDS38011.1 1 105.0 0.0 3.08 20.4 125.5 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000024799 Tm7sf2 ENSMUST00000160354 - NO_TRANSLATION retained_intron ENSMUSG00000024799 Tm7sf2 ENSMUST00000159836 - NO_TRANSLATION retained_intron ENSMUSG00000024799 Tm7sf2 ENSMUST00000236413 - NO_TRANSLATION retained_intron ENSMUSG00000024799 Tm7sf2 ENSMUST00000160417 ENSMUSP00000158473 TRANSLATION protein_coding - - 1 91.0 0.0 2.83 0.0 83.3 3.0 1,-3 0.0 1 0.0 MINOR ENSMUSG00000024799 Tm7sf2 ENSMUST00000162549 - NO_TRANSLATION retained_intron ENSMUSG00000024799 Tm7sf2 ENSMUST00000161528 ENSMUSP00000123989 TRANSLATION protein_coding - - 1 110.0 0.0 2.3 0.0 25.1 2.0 -2,-3 0.0 - 0.0 MINOR ENSMUSG00000024799 Tm7sf2 ENSMUST00000162721 - NO_TRANSLATION retained_intron ENSMUSG00000024799 Tm7sf2 ENSMUST00000161718 ENSMUSP00000124283 TRANSLATION protein_coding stop - 5 197.0 0.0 4.83 0.0 278.2 5.0 -4,-5 0.0036 3 -2.0 MINOR ENSMUSG00000024799 Tm7sf2 ENSMUST00000162575 ENSMUSP00000125586 TRANSLATION protein_coding stop - 5 229.0 0.0 5.3 0.0 189.3 7.0 -2,-3 0.0029 1 -2.0 MINOR ENSMUSG00000024799 Tm7sf2 ENSMUST00000162810 ENSMUSP00000124825 TRANSLATION protein_coding stop - 3 124.0 0.0 3.83 0.0 107.5 5.0 1,-3 0.0021 1 -2.0 MINOR ENSMUSG00000024799 Tm7sf2 ENSMUST00000160028 ENSMUSP00000124847 TRANSLATION protein_coding stop - 3 61.0 0.0 1.0 0.0 0.0 1.0 2,-2 0.0035 - -2.0 MINOR ENSMUSG00000024799 Tm7sf2 ENSMUST00000159084 ENSMUSP00000124868 TRANSLATION protein_coding - - 5 391.0 0.0 10.29 1.0 396.2 12.0 -2,-3 0.0357 3 6.528 MINOR ENSMUSG00000024799 Tm7sf2 ENSMUST00000113543 ENSMUSP00000109171 TRANSLATION protein_coding - - 1 399.0 0.0 9.558 0.0 363.1 13.0 -2,-3 0.016 4 3.078 MINOR ENSMUSG00000024799 Tm7sf2 ENSMUST00000161090 ENSMUSP00000125543 TRANSLATION nonsense_mediated_decay - - 5 89.0 0.0 1.866 0.0 0.0 2.0 -2,-3 0.0002 - -2.0 MINOR ENSMUSG00000024799 Tm7sf2 ENSMUST00000025713 ENSMUSP00000025713 TRANSLATION protein_coding - CCDS29490.2 1 418.0 0.0 11.04 12.6 462.4 13.0 -2,-3 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000033717 Adra2a ENSMUST00000237285 ENSMUSP00000157421 TRANSLATION protein_coding - CCDS29905.1 - 465.0 0.0 0.6 4.3 244.6 7.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000033717 Adra2a ENSMUST00000036700 ENSMUSP00000036203 TRANSLATION protein_coding - CCDS29905.1 - 465.0 0.0 0.6 4.3 244.6 7.0 -4,-7 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000024737 Slc15a3 ENSMUST00000138263 - NO_TRANSLATION retained_intron ENSMUSG00000024737 Slc15a3 ENSMUST00000131010 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024737 Slc15a3 ENSMUST00000025646 ENSMUSP00000025646 TRANSLATION protein_coding - CCDS29588.1 1 578.0 0.0 1.7 4.7 258.8 0.0 -4,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000024737 Slc15a3 ENSMUST00000138380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024730 Ms4a8a ENSMUST00000025636 ENSMUSP00000025636 TRANSLATION protein_coding - CCDS37921.1 1 290.0 0.0 2.68 0.0 69.1 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024730 Ms4a8a ENSMUST00000187859 - NO_TRANSLATION retained_intron ENSMUSG00000024863 Mbl2 ENSMUST00000025797 ENSMUSP00000025797 TRANSLATION protein_coding - CCDS29742.1 1 244.0 13.0 2.05 5.4 97.0 0.0 4,-1 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000052085 Dock8 ENSMUST00000237705 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052085 Dock8 ENSMUST00000236576 - NO_TRANSLATION retained_intron ENSMUSG00000052085 Dock8 ENSMUST00000025831 ENSMUSP00000025831 TRANSLATION protein_coding - CCDS37943.1 1 2100.0 0.0 11.49 7.3 946.4 0.0 -4,-1 1.0 41 14.0 PRINCIPAL:1 ENSMUSG00000052085 Dock8 ENSMUST00000235722 - NO_TRANSLATION retained_intron ENSMUSG00000052085 Dock8 ENSMUST00000237532 - NO_TRANSLATION retained_intron ENSMUSG00000052085 Dock8 ENSMUST00000236471 - NO_TRANSLATION retained_intron ENSMUSG00000094584 Ms4a18 ENSMUST00000177684 ENSMUSP00000136529 TRANSLATION protein_coding - CCDS57137.1 1 344.0 0.0 3.5 0.0 60.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067279 Ppp1r3c ENSMUST00000087321 ENSMUSP00000084578 TRANSLATION protein_coding - CCDS37968.1 1 317.0 0.0 0.8 15.5 118.0 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000037916 Ndufv1 ENSMUST00000132747 - NO_TRANSLATION retained_intron ENSMUSG00000037916 Ndufv1 ENSMUST00000148283 - NO_TRANSLATION retained_intron ENSMUSG00000037916 Ndufv1 ENSMUST00000134049 - NO_TRANSLATION retained_intron ENSMUSG00000037916 Ndufv1 ENSMUST00000129706 ENSMUSP00000115653 TRANSLATION nonsense_mediated_decay - - 3 120.0 6.0 3.047 0.0 28.3 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000037916 Ndufv1 ENSMUST00000150852 - NO_TRANSLATION retained_intron ENSMUSG00000037916 Ndufv1 ENSMUST00000134479 ENSMUSP00000121915 TRANSLATION protein_coding - - 5 385.0 27.0 8.99 0.1 273.9 0.0 -4,-7 0.0642 18 10.238 MINOR ENSMUSG00000037916 Ndufv1 ENSMUST00000237862 ENSMUSP00000157713 TRANSLATION protein_coding - - - 385.0 27.0 8.99 0.1 273.9 0.0 -4,-7 0.0642 18 10.238 MINOR ENSMUSG00000037916 Ndufv1 ENSMUST00000128787 ENSMUSP00000123069 TRANSLATION protein_coding - - 5 455.0 27.0 10.74 5.0 273.9 0.0 -4,-1 0.7552 21 15.246 ALTERNATIVE:1 ENSMUSG00000037916 Ndufv1 ENSMUST00000042497 ENSMUSP00000042967 TRANSLATION protein_coding - CCDS29410.1 1 464.0 27.0 10.872 6.3 273.9 0.0 -4,0 1.0 21 16.0 PRINCIPAL:4 ENSMUSG00000037916 Ndufv1 ENSMUST00000149482 - NO_TRANSLATION retained_intron ENSMUSG00000037916 Ndufv1 ENSMUST00000236203 ENSMUSP00000158219 TRANSLATION protein_coding stop - - 128.0 3.0 2.962 0.0 76.1 0.0 -4,0 0.0 7 -2.0 MINOR ENSMUSG00000037916 Ndufv1 ENSMUST00000136921 ENSMUSP00000123680 TRANSLATION protein_coding stop - 3 115.0 9.0 3.16 0.0 116.6 0.0 -4,-7 0.0 8 -2.0 MINOR ENSMUSG00000037916 Ndufv1 ENSMUST00000237129 ENSMUSP00000157826 TRANSLATION nonsense_mediated_decay - - - 41.0 6.0 1.165 0.0 32.2 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000037916 Ndufv1 ENSMUST00000133474 ENSMUSP00000120223 TRANSLATION protein_coding stop - 3 146.0 14.0 4.16 0.0 153.6 0.0 -4,-7 0.0 9 -2.0 MINOR ENSMUSG00000025172 Ankrd2 ENSMUST00000026172 ENSMUSP00000026172 TRANSLATION protein_coding - CCDS50437.1 1 328.0 0.0 5.366 1.2 81.7 0.0 -4,-5 0.5711 7 12.118 MINOR ENSMUSG00000025172 Ankrd2 ENSMUST00000238137 ENSMUSP00000157671 TRANSLATION protein_coding - - - 332.0 0.0 5.366 4.4 81.7 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000056185 Snx32 ENSMUST00000236120 - NO_TRANSLATION retained_intron ENSMUSG00000056185 Snx32 ENSMUST00000238132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056185 Snx32 ENSMUST00000237924 - NO_TRANSLATION retained_intron ENSMUSG00000056185 Snx32 ENSMUST00000237249 - NO_TRANSLATION retained_intron ENSMUSG00000056185 Snx32 ENSMUST00000237111 ENSMUSP00000157473 TRANSLATION protein_coding - - - 451.0 0.0 9.75 0.0 125.4 0.0 -4,-5 0.0157 6 10.98 MINOR ENSMUSG00000056185 Snx32 ENSMUST00000070172 ENSMUSP00000070915 TRANSLATION protein_coding - CCDS29468.1 1 404.0 0.0 10.25 4.6 125.7 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000056185 Snx32 ENSMUST00000237945 - NO_TRANSLATION retained_intron ENSMUSG00000024846 Cst6 ENSMUST00000025764 ENSMUSP00000025764 TRANSLATION protein_coding - CCDS29457.1 1 149.0 0.0 3.0 5.6 62.5 0.0 2,-2 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000024846 Cst6 ENSMUST00000237627 - NO_TRANSLATION retained_intron ENSMUSG00000024846 Cst6 ENSMUST00000238111 ENSMUSP00000158005 TRANSLATION protein_coding stop - - 136.0 0.0 1.0 0.0 24.8 0.0 2,-2 0.0056 1 -2.0 MINOR ENSMUSG00000025089 Gfra1 ENSMUST00000152507 ENSMUSP00000120333 TRANSLATION protein_coding - CCDS38028.1 5 468.0 0.0 5.755 8.8 150.1 0.0 2,-2 0.9635 9 11.0 PRINCIPAL:3 ENSMUSG00000025089 Gfra1 ENSMUST00000169850 ENSMUSP00000130128 TRANSLATION protein_coding - CCDS38028.1 1 468.0 0.0 5.755 8.8 150.1 0.0 2,-2 0.9635 9 11.0 PRINCIPAL:3 ENSMUSG00000025089 Gfra1 ENSMUST00000123957 ENSMUSP00000120058 TRANSLATION protein_coding stop - 2 25.0 0.0 0.0 0.0 0.0 0.0 2,-1 0.0028 - -2.0 MINOR ENSMUSG00000025089 Gfra1 ENSMUST00000129100 ENSMUSP00000117196 TRANSLATION protein_coding - CCDS70967.1 1 463.0 0.0 5.755 8.8 150.1 0.0 2,-2 1.0 8 11.0 ALTERNATIVE:1 ENSMUSG00000025089 Gfra1 ENSMUST00000131877 ENSMUSP00000122810 TRANSLATION protein_coding stop - 2 48.0 0.0 0.85 0.0 0.0 0.0 2,-2 0.0015 - -2.0 MINOR ENSMUSG00000025089 Gfra1 ENSMUST00000026076 ENSMUSP00000026076 TRANSLATION protein_coding - CCDS38028.1 1 468.0 0.0 5.755 8.8 150.1 0.0 2,-2 0.9635 9 11.0 PRINCIPAL:3 ENSMUSG00000025089 Gfra1 ENSMUST00000135730 ENSMUSP00000121447 TRANSLATION protein_coding stop - 2 8.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000025089 Gfra1 ENSMUST00000140141 ENSMUSP00000123022 TRANSLATION nonsense_mediated_decay - - 1 419.0 0.0 5.755 0.0 150.1 0.0 2,-2 0.1045 7 -2.0 MINOR ENSMUSG00000025089 Gfra1 ENSMUST00000138530 ENSMUSP00000115239 TRANSLATION protein_coding stop - 3 54.0 0.0 0.85 0.0 0.0 0.0 2,-2 0.0025 - -2.0 MINOR ENSMUSG00000024816 Frmd8 ENSMUST00000145026 - NO_TRANSLATION retained_intron ENSMUSG00000024816 Frmd8 ENSMUST00000155227 ENSMUSP00000116453 TRANSLATION protein_coding stop - 5 201.0 0.0 1.3 0.0 31.6 0.0 -4,-7 0.0003 1 -2.0 MINOR ENSMUSG00000024816 Frmd8 ENSMUST00000025728 ENSMUSP00000025728 TRANSLATION protein_coding - CCDS29481.1 1 466.0 0.0 1.5589 8.4 48.2 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000024816 Frmd8 ENSMUST00000133729 - NO_TRANSLATION retained_intron ENSMUSG00000024875 Yif1a ENSMUST00000238093 ENSMUSP00000157938 TRANSLATION protein_coding - - - 240.0 0.0 0.0 0.0 225.1 5.0 -4,-7 0.0031 2 2.892 MINOR ENSMUSG00000024875 Yif1a ENSMUST00000237025 ENSMUSP00000157411 TRANSLATION protein_coding - - - 241.0 0.0 0.0 2.1 183.7 7.0 -4,-7 0.0554 2 0.758 MINOR ENSMUSG00000024875 Yif1a ENSMUST00000236687 ENSMUSP00000157857 TRANSLATION protein_coding - - - 284.0 0.0 0.0 0.0 276.9 8.0 -4,-6 0.0969 3 6.0 MINOR ENSMUSG00000024875 Yif1a ENSMUST00000237603 ENSMUSP00000157958 TRANSLATION nonsense_mediated_decay - - - 130.0 0.0 0.0 0.0 79.4 0.0 -4,-7 0.0004 1 -2.0 MINOR ENSMUSG00000024875 Yif1a ENSMUST00000235773 - NO_TRANSLATION retained_intron ENSMUSG00000024875 Yif1a ENSMUST00000025811 ENSMUSP00000025811 TRANSLATION protein_coding - CCDS29450.1 1 293.0 0.0 0.0 7.3 276.9 8.0 -4,-7 1.0 3 8.0 PRINCIPAL:1 ENSMUSG00000024759 Atl3 ENSMUST00000237998 ENSMUSP00000158217 TRANSLATION protein_coding stop - - 100.0 0.0 1.55 0.0 0.0 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000024759 Atl3 ENSMUST00000235557 ENSMUSP00000157731 TRANSLATION protein_coding stop - - 58.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024759 Atl3 ENSMUST00000236308 ENSMUSP00000158179 TRANSLATION protein_coding - - - 232.0 13.0 4.35 0.0 177.3 0.0 -4,-5 0.0 7 1.332 MINOR ENSMUSG00000024759 Atl3 ENSMUST00000170373 ENSMUSP00000132619 TRANSLATION protein_coding - CCDS50379.1 5 536.0 20.0 10.22 0.4 349.7 2.0 -4,-5 0.2744 20 18.0 MINOR ENSMUSG00000024759 Atl3 ENSMUST00000235260 - NO_TRANSLATION retained_intron ENSMUSG00000024759 Atl3 ENSMUST00000236382 ENSMUSP00000158227 TRANSLATION nonsense_mediated_decay start - - 323.0 20.0 7.1 0.0 297.6 0.0 -4,-6 0.0007 10 -2.0 MINOR ENSMUSG00000024759 Atl3 ENSMUST00000025668 ENSMUSP00000025668 TRANSLATION protein_coding - CCDS29527.1 1 541.0 20.0 10.22 9.4 349.7 2.0 -4,-7 1.0 21 21.0 PRINCIPAL:1 ENSMUSG00000099655 2310034G01Rik ENSMUST00000189008 ENSMUSP00000153475 TRANSLATION protein_coding - - 5 209.0 0.0 0.5 0.4 0.0 0.0 -4,-7 0.6767 - 6.0 PRINCIPAL:1 ENSMUSG00000080268 Brms1 ENSMUST00000237117 - NO_TRANSLATION retained_intron ENSMUSG00000080268 Brms1 ENSMUST00000236707 - NO_TRANSLATION retained_intron ENSMUSG00000080268 Brms1 ENSMUST00000235918 ENSMUSP00000158469 TRANSLATION protein_coding stop - - 83.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0025 - -2.0 MINOR ENSMUSG00000080268 Brms1 ENSMUST00000116567 ENSMUSP00000112266 TRANSLATION protein_coding - CCDS50355.1 1 246.0 0.0 1.83 11.9 0.0 0.0 -4,-5 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000080268 Brms1 ENSMUST00000236320 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024907 Gal ENSMUST00000237521 ENSMUSP00000157515 TRANSLATION protein_coding - CCDS29396.1 - 124.0 0.0 1.125 7.8 106.4 0.0 2,-2 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000024907 Gal ENSMUST00000025842 ENSMUSP00000025842 TRANSLATION protein_coding - - 1 141.0 3.0 0.75 0.0 67.7 0.0 2,-2 0.0051 1 10.68 MINOR ENSMUSG00000051156 Or10q1b ENSMUST00000216366 ENSMUSP00000149071 TRANSLATION protein_coding - CCDS29669.1 5 319.0 0.0 1.0 7.8 176.0 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051156 Or10q1b ENSMUST00000214007 ENSMUSP00000151038 TRANSLATION protein_coding - CCDS29669.1 5 319.0 0.0 1.0 7.8 176.0 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051156 Or10q1b ENSMUST00000216622 ENSMUSP00000149884 TRANSLATION protein_coding - CCDS29669.1 5 319.0 0.0 1.0 7.8 176.0 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051156 Or10q1b ENSMUST00000215493 ENSMUSP00000150165 TRANSLATION protein_coding - CCDS29669.1 5 319.0 0.0 1.0 7.8 176.0 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051156 Or10q1b ENSMUST00000052737 ENSMUSP00000057902 TRANSLATION protein_coding - CCDS29669.1 - 319.0 0.0 1.0 7.8 176.0 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000051156 Or10q1b ENSMUST00000216377 ENSMUSP00000148862 TRANSLATION protein_coding - CCDS29669.1 5 319.0 0.0 1.0 7.8 176.0 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000055895 Oosp2 ENSMUST00000135994 ENSMUSP00000119198 TRANSLATION protein_coding - - 3 70.0 0.0 0.75 0.0 0.0 0.0 -4,-7 0.0159 - 1.998 MINOR ENSMUSG00000055895 Oosp2 ENSMUST00000121793 ENSMUSP00000113931 TRANSLATION protein_coding - CCDS29606.1 1 168.0 0.0 2.25 1.0 0.0 0.0 3,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000100621 Gm28374 ENSMUST00000162374 ENSMUSP00000124641 TRANSLATION protein_coding,RT - - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000061132 Blnk ENSMUST00000134568 - NO_TRANSLATION retained_intron ENSMUSG00000061132 Blnk ENSMUST00000117695 ENSMUSP00000112473 TRANSLATION protein_coding - - 1 454.0 0.0 2.75 8.4 41.1 0.0 -4,-5 0.8782 2 11.0 ALTERNATIVE:1 ENSMUSG00000061132 Blnk ENSMUST00000054769 ENSMUSP00000057844 TRANSLATION protein_coding - CCDS37983.1 1 457.0 0.0 2.75 8.4 41.1 0.0 -4,-5 1.0 2 11.0 PRINCIPAL:4 ENSMUSG00000050865 Or10q1 ENSMUST00000214697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050865 Or10q1 ENSMUST00000207836 ENSMUSP00000146563 TRANSLATION protein_coding - CCDS29670.1 3 315.0 0.0 1.0 1.1 179.4 7.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000050865 Or10q1 ENSMUST00000214479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050865 Or10q1 ENSMUST00000051768 ENSMUSP00000056291 TRANSLATION protein_coding - CCDS29670.1 - 315.0 0.0 1.0 1.1 179.4 7.0 -3,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000049670 Morn4 ENSMUST00000237567 - NO_TRANSLATION retained_intron ENSMUSG00000049670 Morn4 ENSMUST00000051772 ENSMUSP00000062887 TRANSLATION protein_coding - CCDS37990.1 1 146.0 0.0 3.75 36.9 103.7 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000024736 Tmem132a ENSMUST00000238070 ENSMUSP00000158531 TRANSLATION protein_coding start/stop - - 128.0 0.0 0.0 0.0 50.5 0.0 -4,-7 0.0002 1 -2.0 MINOR ENSMUSG00000024736 Tmem132a ENSMUST00000120524 ENSMUSP00000113696 TRANSLATION protein_coding - - 5 687.0 0.0 0.0 0.0 413.1 0.0 1,-2 0.0062 12 0.0 MINOR ENSMUSG00000024736 Tmem132a ENSMUST00000025645 ENSMUSP00000025645 TRANSLATION protein_coding - CCDS29589.1 1 1018.0 0.0 0.0 0.1 564.7 0.0 1,-2 1.0 12 6.0 PRINCIPAL:1 ENSMUSG00000024736 Tmem132a ENSMUST00000235186 - NO_TRANSLATION retained_intron ENSMUSG00000024771 Lipk ENSMUST00000225505 ENSMUSP00000152955 TRANSLATION protein_coding - - - 398.0 7.0 7.9 11.9 95.6 0.0 2,-2 0.8849 3 15.0 ALTERNATIVE:1 ENSMUSG00000024771 Lipk ENSMUST00000054260 ENSMUSP00000053913 TRANSLATION protein_coding - CCDS57143.1 1 403.0 7.0 7.9 11.9 95.6 0.0 2,-1 1.0 3 15.0 PRINCIPAL:4 ENSMUSG00000024771 Lipk ENSMUST00000224738 ENSMUSP00000153550 TRANSLATION nonsense_mediated_decay - - - 37.0 0.0 0.4 0.0 0.0 0.0 2,-2 0.0016 - -2.0 MINOR ENSMUSG00000025008 Tctn3 ENSMUST00000132452 ENSMUSP00000121760 TRANSLATION protein_coding - - 1 393.0 0.0 0.0 0.0 244.3 0.0 3,-2 0.0152 3 0.0 MINOR ENSMUSG00000025008 Tctn3 ENSMUST00000025981 ENSMUSP00000025981 TRANSLATION protein_coding - CCDS29804.1 1 595.0 0.0 0.0 0.0 274.3 0.0 3,-2 0.4197 4 0.0 ALTERNATIVE:2 ENSMUSG00000025008 Tctn3 ENSMUST00000144566 - NO_TRANSLATION retained_intron ENSMUSG00000025008 Tctn3 ENSMUST00000135795 ENSMUSP00000123461 TRANSLATION protein_coding - - 1 492.0 0.0 0.0 0.0 274.3 0.0 3,-2 0.7848 3 0.0 PRINCIPAL:2 ENSMUSG00000024981 Acsl5 ENSMUST00000226019 - NO_TRANSLATION retained_intron ENSMUSG00000024981 Acsl5 ENSMUST00000224414 ENSMUSP00000152972 TRANSLATION protein_coding start - - 96.0 1.0 2.5 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024981 Acsl5 ENSMUST00000043150 ENSMUSP00000046585 TRANSLATION protein_coding - CCDS29908.1 1 683.0 22.0 10.494 31.0 363.6 3.0 -2,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000024981 Acsl5 ENSMUST00000224337 ENSMUSP00000153474 TRANSLATION nonsense_mediated_decay - - - 95.0 0.0 0.0 0.0 0.0 3.0 -2,-5 0.0009 - -2.0 MINOR ENSMUSG00000024981 Acsl5 ENSMUST00000225551 ENSMUSP00000153302 TRANSLATION protein_coding stop - - 117.0 0.0 0.48 0.0 0.0 3.0 -2,-5 0.0002 3 -2.0 MINOR ENSMUSG00000024981 Acsl5 ENSMUST00000225454 ENSMUSP00000152956 TRANSLATION protein_coding start - - 62.0 0.0 0.93 0.0 28.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025218 Poll ENSMUST00000026239 ENSMUSP00000026239 TRANSLATION protein_coding - CCDS29861.1 1 573.0 8.0 4.8 9.4 323.9 0.0 -4,-5 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000047044 D030056L22Rik ENSMUST00000062753 ENSMUSP00000108465 TRANSLATION protein_coding - - 1 163.0 0.0 0.0 0.4 28.9 0.0 -4,-2 0.6915 3 0.0 PRINCIPAL:4 ENSMUSG00000047044 D030056L22Rik ENSMUST00000055792 ENSMUSP00000061933 TRANSLATION protein_coding - CCDS29690.1 1 162.0 0.0 0.0 0.4 28.9 0.0 -4,-2 0.5669 3 0.0 ALTERNATIVE:2 ENSMUSG00000024777 Ppp2r5b ENSMUST00000148693 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024777 Ppp2r5b ENSMUST00000236699 - NO_TRANSLATION retained_intron ENSMUSG00000024777 Ppp2r5b ENSMUST00000025695 ENSMUSP00000025695 TRANSLATION protein_coding - CCDS29499.1 1 497.0 0.0 10.75 9.1 618.9 0.0 -4,-6 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000024777 Ppp2r5b ENSMUST00000153155 - NO_TRANSLATION retained_intron ENSMUSG00000075227 Znhit2 ENSMUST00000162726 ENSMUSP00000134031 TRANSLATION protein_coding - CCDS57131.1 - 399.0 8.0 0.0 4.7 46.2 0.0 -4,-6 0.9802 2 14.0 PRINCIPAL:1 ENSMUSG00000042694 Stn1 ENSMUST00000182431 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042694 Stn1 ENSMUST00000182251 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042694 Stn1 ENSMUST00000182654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042694 Stn1 ENSMUST00000182291 ENSMUSP00000138553 TRANSLATION protein_coding stop - 3 99.0 0.0 2.5 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000042694 Stn1 ENSMUST00000182873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042694 Stn1 ENSMUST00000183283 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042694 Stn1 ENSMUST00000182714 ENSMUSP00000157804 TRANSLATION protein_coding - - 2 87.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000042694 Stn1 ENSMUST00000183004 - NO_TRANSLATION retained_intron ENSMUSG00000042694 Stn1 ENSMUST00000182808 ENSMUSP00000138727 TRANSLATION protein_coding - - 1 351.0 0.0 5.67 0.0 232.8 0.0 -4,-6 0.0029 8 7.368 MINOR ENSMUSG00000042694 Stn1 ENSMUST00000049369 ENSMUSP00000040944 TRANSLATION protein_coding - CCDS29892.1 1 378.0 0.0 6.67 2.4 276.7 0.0 -4,-6 1.0 8 13.0 PRINCIPAL:1 ENSMUSG00000009378 Slc16a12 ENSMUST00000009522 ENSMUSP00000009522 TRANSLATION protein_coding - CCDS29767.1 1 486.0 0.0 3.32 5.0 130.1 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000009378 Slc16a12 ENSMUST00000235650 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118491 Gm44505 ENSMUST00000142247 ENSMUSP00000124424 TRANSLATION nonsense_mediated_decay,RT - - 5 529.0 20.0 3.49 0.0 55.9 0.0 -4,-5 0.7779 - -2.0 PRINCIPAL:1 ENSMUSG00000024830 Rps6kb2 ENSMUST00000141104 - NO_TRANSLATION retained_intron ENSMUSG00000024830 Rps6kb2 ENSMUST00000130469 ENSMUSP00000117446 TRANSLATION nonsense_mediated_decay - - 1 153.0 12.0 2.83 0.0 51.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024830 Rps6kb2 ENSMUST00000237691 ENSMUSP00000158503 TRANSLATION nonsense_mediated_decay - - - 160.0 12.0 2.83 0.0 52.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024830 Rps6kb2 ENSMUST00000154307 - NO_TRANSLATION retained_intron ENSMUSG00000024830 Rps6kb2 ENSMUST00000127605 ENSMUSP00000123376 TRANSLATION nonsense_mediated_decay - - 5 312.0 20.0 6.558 0.0 202.2 0.0 -4,-5 0.0017 - -2.0 MINOR ENSMUSG00000024830 Rps6kb2 ENSMUST00000125057 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024830 Rps6kb2 ENSMUST00000137431 ENSMUSP00000116744 TRANSLATION nonsense_mediated_decay - - 5 285.0 20.0 6.16 0.0 205.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024830 Rps6kb2 ENSMUST00000118483 ENSMUSP00000112512 TRANSLATION protein_coding - - 5 392.0 20.0 9.41 0.0 257.5 0.0 -4,-5 0.019 2 16.038 MINOR ENSMUSG00000024830 Rps6kb2 ENSMUST00000025749 ENSMUSP00000025749 TRANSLATION protein_coding - CCDS29419.1 1 485.0 20.0 10.01 10.9 270.2 0.0 -4,-5 1.0 3 21.0 PRINCIPAL:1 ENSMUSG00000024830 Rps6kb2 ENSMUST00000155303 ENSMUSP00000157921 TRANSLATION protein_coding stop - 3 114.0 8.0 2.91 0.0 105.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024830 Rps6kb2 ENSMUST00000151727 - NO_TRANSLATION retained_intron ENSMUSG00000024830 Rps6kb2 ENSMUST00000135911 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064202 Spata6l ENSMUST00000160542 ENSMUSP00000124396 TRANSLATION protein_coding - - 1 330.0 0.0 2.58 0.0 69.2 0.0 -4,-5 0.0 - 2.202 MINOR ENSMUSG00000064202 Spata6l ENSMUST00000025872 ENSMUSP00000025872 TRANSLATION protein_coding - CCDS37948.1 1 347.0 0.0 3.08 0.1 104.6 0.0 -4,-5 0.0077 - 4.722 MINOR ENSMUSG00000064202 Spata6l ENSMUST00000164777 ENSMUSP00000132800 TRANSLATION protein_coding - - 1 333.0 0.0 2.58 0.0 69.2 0.0 -4,-5 0.0 - 2.202 MINOR ENSMUSG00000064202 Spata6l ENSMUST00000159655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000064202 Spata6l ENSMUST00000161813 ENSMUSP00000123823 TRANSLATION protein_coding stop - 5 39.0 0.0 1.0 0.0 29.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000064202 Spata6l ENSMUST00000175647 ENSMUSP00000135813 TRANSLATION nonsense_mediated_decay - - 1 93.0 0.0 1.4 0.0 68.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000064202 Spata6l ENSMUST00000162110 ENSMUSP00000123818 TRANSLATION protein_coding - - 5 401.0 0.0 4.48 2.1 179.2 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000071656 Lrrn4cl ENSMUST00000235683 ENSMUSP00000157980 TRANSLATION protein_coding - CCDS37909.1 - 239.0 0.0 0.2 2.0 32.2 1.0 2,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000071656 Lrrn4cl ENSMUST00000096257 ENSMUSP00000093976 TRANSLATION protein_coding - CCDS37909.1 1 239.0 0.0 0.2 2.0 32.2 1.0 2,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000024787 Snx15 ENSMUST00000138931 ENSMUSP00000114189 TRANSLATION protein_coding stop - 3 230.0 0.0 2.05 0.0 54.4 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000024787 Snx15 ENSMUST00000129076 - NO_TRANSLATION retained_intron ENSMUSG00000024787 Snx15 ENSMUST00000154601 ENSMUSP00000122740 TRANSLATION protein_coding - - 5 251.0 0.0 2.55 0.0 55.9 0.0 -4,-5 0.0045 6 7.458 MINOR ENSMUSG00000024787 Snx15 ENSMUST00000124964 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024787 Snx15 ENSMUST00000025702 ENSMUSP00000025702 TRANSLATION protein_coding - CCDS29495.1 1 337.0 0.0 2.95 4.8 118.0 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000024787 Snx15 ENSMUST00000235824 ENSMUSP00000158383 TRANSLATION nonsense_mediated_decay start - - 193.0 0.0 1.05 0.0 48.4 0.0 -4,-2 0.0 6 -2.0 MINOR ENSMUSG00000024787 Snx15 ENSMUST00000150718 - NO_TRANSLATION retained_intron ENSMUSG00000024787 Snx15 ENSMUST00000124171 - NO_TRANSLATION retained_intron ENSMUSG00000040105 Plpp6 ENSMUST00000045674 ENSMUSP00000047776 TRANSLATION protein_coding - CCDS29728.1 - 292.0 4.0 0.6 6.3 62.7 0.0 -4,-2 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000056917 Sipa1 ENSMUST00000236827 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056917 Sipa1 ENSMUST00000080824 ENSMUSP00000079637 TRANSLATION protein_coding - CCDS29474.1 1 1038.0 0.0 3.363 6.4 242.9 0.0 -4,-2 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000056917 Sipa1 ENSMUST00000071857 ENSMUSP00000073618 TRANSLATION protein_coding - CCDS29474.1 1 1038.0 0.0 3.363 6.4 242.9 0.0 -4,-2 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000056917 Sipa1 ENSMUST00000237544 ENSMUSP00000158151 TRANSLATION protein_coding stop - - 34.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000056917 Sipa1 ENSMUST00000238092 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056917 Sipa1 ENSMUST00000236464 ENSMUSP00000158193 TRANSLATION protein_coding - - - 693.0 0.0 2.4 0.0 242.9 0.0 -4,-7 0.0287 13 10.074 MINOR ENSMUSG00000056917 Sipa1 ENSMUST00000236006 ENSMUSP00000158378 TRANSLATION protein_coding - CCDS29474.1 - 1038.0 0.0 3.363 6.4 242.9 0.0 -4,-2 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000056917 Sipa1 ENSMUST00000236486 - NO_TRANSLATION retained_intron ENSMUSG00000056917 Sipa1 ENSMUST00000238020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056917 Sipa1 ENSMUST00000169854 ENSMUSP00000132345 TRANSLATION protein_coding - CCDS29474.1 5 1038.0 0.0 3.363 6.4 242.9 0.0 -4,-2 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000056917 Sipa1 ENSMUST00000237874 ENSMUSP00000157692 TRANSLATION protein_coding - CCDS29474.1 - 1038.0 0.0 3.363 6.4 242.9 0.0 -4,-2 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000056917 Sipa1 ENSMUST00000236332 - NO_TRANSLATION retained_intron ENSMUSG00000056917 Sipa1 ENSMUST00000164304 ENSMUSP00000128208 TRANSLATION protein_coding - CCDS29474.1 1 1038.0 0.0 3.363 6.4 242.9 0.0 -4,-2 1.0 20 14.0 PRINCIPAL:1 ENSMUSG00000024866 Acy3 ENSMUST00000235592 - NO_TRANSLATION retained_intron ENSMUSG00000024866 Acy3 ENSMUST00000236739 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024866 Acy3 ENSMUST00000236510 ENSMUSP00000158512 TRANSLATION protein_coding - CCDS29406.1 - 318.0 7.0 6.5 1.1 251.5 0.0 -4,-7 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000024866 Acy3 ENSMUST00000236224 ENSMUSP00000157563 TRANSLATION protein_coding stop - - 174.0 7.0 3.5 0.0 147.3 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000024866 Acy3 ENSMUST00000235612 ENSMUSP00000158093 TRANSLATION protein_coding - CCDS29406.1 - 318.0 7.0 6.5 1.1 251.5 0.0 -4,-7 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000024866 Acy3 ENSMUST00000237910 ENSMUSP00000158203 TRANSLATION protein_coding stop - - 98.0 6.0 1.5 0.0 88.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000024866 Acy3 ENSMUST00000054030 ENSMUSP00000050056 TRANSLATION protein_coding - CCDS29406.1 1 318.0 7.0 6.5 1.1 251.5 0.0 -4,-7 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000040414 Slc25a28 ENSMUST00000237364 ENSMUSP00000157953 TRANSLATION nonsense_mediated_decay start - - 83.0 0.0 1.198 0.0 35.7 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000040414 Slc25a28 ENSMUST00000046038 ENSMUSP00000036913 TRANSLATION protein_coding - CCDS29834.1 1 364.0 0.0 2.5 10.2 205.0 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000040414 Slc25a28 ENSMUST00000236286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040414 Slc25a28 ENSMUST00000236433 ENSMUSP00000158028 TRANSLATION protein_coding - - - 111.0 0.0 0.0 0.0 23.2 0.0 -4,-5 0.0 3 0.0 MINOR ENSMUSG00000040414 Slc25a28 ENSMUST00000235953 - NO_TRANSLATION retained_intron ENSMUSG00000062456 Rpl9-ps6 ENSMUST00000078034 ENSMUSP00000127859 TRANSLATION protein_coding - - - 192.0 0.0 1.0 32.8 113.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000067872 Ccdc87 ENSMUST00000088653 ENSMUSP00000086028 TRANSLATION protein_coding - CCDS29439.1 - 855.0 0.0 0.0 1.8 51.0 0.0 -4,-6 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000054611 Kdm2a ENSMUST00000176653 ENSMUSP00000135745 TRANSLATION protein_coding stop - 3 292.0 16.0 3.75 0.0 129.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054611 Kdm2a ENSMUST00000175777 - NO_TRANSLATION retained_intron ENSMUSG00000054611 Kdm2a ENSMUST00000175978 - NO_TRANSLATION retained_intron ENSMUSG00000054611 Kdm2a ENSMUST00000237268 - NO_TRANSLATION retained_intron ENSMUSG00000054611 Kdm2a ENSMUST00000175682 - NO_TRANSLATION retained_intron ENSMUSG00000054611 Kdm2a ENSMUST00000176483 ENSMUSP00000140253 TRANSLATION protein_coding - - 1 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000054611 Kdm2a ENSMUST00000075856 ENSMUSP00000076698 TRANSLATION protein_coding - CCDS37886.1 5 1161.0 33.0 17.255 13.7 192.3 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000054611 Kdm2a ENSMUST00000047898 ENSMUSP00000047683 TRANSLATION protein_coding - CCDS37886.1 1 1161.0 33.0 17.255 13.7 192.3 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000054611 Kdm2a ENSMUST00000176495 - NO_TRANSLATION retained_intron ENSMUSG00000054611 Kdm2a ENSMUST00000176497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054611 Kdm2a ENSMUST00000235335 ENSMUSP00000157399 TRANSLATION nonsense_mediated_decay start - - 29.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000054611 Kdm2a ENSMUST00000175959 ENSMUSP00000135689 TRANSLATION protein_coding start/stop - 3 246.0 13.0 5.316 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000054611 Kdm2a ENSMUST00000116571 ENSMUSP00000139651 TRANSLATION protein_coding - - 1 494.0 17.0 9.18 0.0 24.8 0.0 -4,-5 0.0006 6 0.0 MINOR ENSMUSG00000054611 Kdm2a ENSMUST00000176532 ENSMUSP00000135418 TRANSLATION nonsense_mediated_decay start - 3 84.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025034 Trim8 ENSMUST00000235934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025034 Trim8 ENSMUST00000026008 ENSMUSP00000026008 TRANSLATION protein_coding - CCDS38009.1 1 551.0 12.0 1.1 23.4 41.4 0.0 -4,-5 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000052920 Prkg1 ENSMUST00000183135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052920 Prkg1 ENSMUST00000182459 ENSMUSP00000158419 TRANSLATION protein_coding - - 2 62.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000052920 Prkg1 ENSMUST00000182401 - NO_TRANSLATION retained_intron ENSMUSG00000052920 Prkg1 ENSMUST00000073581 ENSMUSP00000073268 TRANSLATION protein_coding - CCDS29746.1 1 686.0 19.0 15.5 29.2 370.3 0.0 -4,-5 0.8854 19 18.62 MINOR ENSMUSG00000052920 Prkg1 ENSMUST00000239061 ENSMUSP00000159122 TRANSLATION protein_coding - - - 382.0 19.0 9.25 0.0 223.7 0.0 -4,-5 0.0006 8 6.0 MINOR ENSMUSG00000052920 Prkg1 ENSMUST00000182527 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052920 Prkg1 ENSMUST00000182685 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052920 Prkg1 ENSMUST00000065067 ENSMUSP00000067576 TRANSLATION protein_coding - CCDS29745.1 1 671.0 19.0 15.5 30.3 424.1 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000094755 Or5b101 ENSMUST00000087773 ENSMUSP00000085071 TRANSLATION protein_coding - CCDS29648.1 - 307.0 0.0 1.0 8.2 168.5 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067526 Or4d10 ENSMUST00000214918 ENSMUSP00000151154 TRANSLATION protein_coding - CCDS84423.1 5 311.0 0.0 1.0 3.2 161.5 6.0 -4,-6 1.0 - 13.334 PRINCIPAL:1 ENSMUSG00000067526 Or4d10 ENSMUST00000087828 ENSMUSP00000085130 TRANSLATION protein_coding start - - 312.0 0.0 1.0 4.3 161.5 6.0 -4,-7 0.793 - -2.0 MINOR ENSMUSG00000024948 Map4k2 ENSMUST00000154900 - NO_TRANSLATION retained_intron ENSMUSG00000024948 Map4k2 ENSMUST00000148410 - NO_TRANSLATION retained_intron ENSMUSG00000024948 Map4k2 ENSMUST00000236640 ENSMUSP00000158086 TRANSLATION nonsense_mediated_decay start - - 138.0 0.0 0.0 0.0 46.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024948 Map4k2 ENSMUST00000140098 - NO_TRANSLATION retained_intron ENSMUSG00000024948 Map4k2 ENSMUST00000128170 ENSMUSP00000121856 TRANSLATION nonsense_mediated_decay start - 5 142.0 0.0 0.0 0.0 60.3 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000024948 Map4k2 ENSMUST00000126841 - NO_TRANSLATION retained_intron ENSMUSG00000024948 Map4k2 ENSMUST00000127809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024948 Map4k2 ENSMUST00000124333 - NO_TRANSLATION retained_intron ENSMUSG00000024948 Map4k2 ENSMUST00000142862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024948 Map4k2 ENSMUST00000142496 ENSMUSP00000114243 TRANSLATION nonsense_mediated_decay - - 5 57.0 8.0 1.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024948 Map4k2 ENSMUST00000130382 ENSMUSP00000120123 TRANSLATION protein_coding stop - 5 351.0 18.0 8.109 0.0 146.2 0.0 -4,-6 0.0002 5 -2.0 MINOR ENSMUSG00000024948 Map4k2 ENSMUST00000025897 ENSMUSP00000025897 TRANSLATION protein_coding - CCDS29503.1 1 821.0 18.0 9.109 6.1 416.6 0.0 -4,-6 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000024948 Map4k2 ENSMUST00000123468 - NO_TRANSLATION retained_intron ENSMUSG00000024948 Map4k2 ENSMUST00000155655 ENSMUSP00000158007 TRANSLATION nonsense_mediated_decay start - 1 70.0 0.0 0.0 0.0 58.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024948 Map4k2 ENSMUST00000152259 - NO_TRANSLATION retained_intron ENSMUSG00000024948 Map4k2 ENSMUST00000133696 - NO_TRANSLATION retained_intron ENSMUSG00000024948 Map4k2 ENSMUST00000152912 - NO_TRANSLATION retained_intron ENSMUSG00000024948 Map4k2 ENSMUST00000137095 - NO_TRANSLATION retained_intron ENSMUSG00000024948 Map4k2 ENSMUST00000152349 ENSMUSP00000115741 TRANSLATION nonsense_mediated_decay - - 3 58.0 8.0 1.948 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024948 Map4k2 ENSMUST00000149624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024948 Map4k2 ENSMUST00000155569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024948 Map4k2 ENSMUST00000124556 ENSMUSP00000121375 TRANSLATION nonsense_mediated_decay - - 1 57.0 8.0 1.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024948 Map4k2 ENSMUST00000134307 - NO_TRANSLATION retained_intron ENSMUSG00000024807 Syvn1 ENSMUST00000235478 - NO_TRANSLATION retained_intron ENSMUSG00000024807 Syvn1 ENSMUST00000156550 ENSMUSP00000121885 TRANSLATION protein_coding - - 5 608.0 8.0 9.05 3.3 41.2 6.0 2,-2 0.7013 4 14.92 ALTERNATIVE:2 ENSMUSG00000024807 Syvn1 ENSMUST00000129081 ENSMUSP00000118698 TRANSLATION protein_coding stop - 3 160.0 0.0 4.0 0.0 0.0 5.0 2,-2 0.0041 2 -2.0 MINOR ENSMUSG00000024807 Syvn1 ENSMUST00000134667 ENSMUSP00000114960 TRANSLATION protein_coding - CCDS29487.1 1 612.0 8.0 9.05 6.0 41.2 6.0 2,-2 1.0 4 16.0 PRINCIPAL:2 ENSMUSG00000024807 Syvn1 ENSMUST00000142101 - NO_TRANSLATION retained_intron ENSMUSG00000024807 Syvn1 ENSMUST00000025723 ENSMUSP00000025723 TRANSLATION protein_coding - - 5 561.0 8.0 7.55 0.0 41.2 4.0 2,-2 0.0869 4 11.0 MINOR ENSMUSG00000024807 Syvn1 ENSMUST00000138532 ENSMUSP00000114843 TRANSLATION protein_coding - CCDS29487.1 1 612.0 8.0 9.05 6.0 41.2 6.0 2,-2 1.0 4 16.0 PRINCIPAL:2 ENSMUSG00000024807 Syvn1 ENSMUST00000144328 - NO_TRANSLATION retained_intron ENSMUSG00000024854 Pold4 ENSMUST00000237518 ENSMUSP00000158476 TRANSLATION protein_coding - - - 102.0 0.0 2.25 0.0 0.0 0.0 -4,-6 0.0206 2 5.232 MINOR ENSMUSG00000024854 Pold4 ENSMUST00000235306 ENSMUSP00000157888 TRANSLATION protein_coding - - - 32.0 0.0 1.08 0.0 0.0 0.0 -4,-5 0.0022 - 2.514 MINOR ENSMUSG00000024854 Pold4 ENSMUST00000025773 ENSMUSP00000025773 TRANSLATION protein_coding - CCDS29424.1 1 107.0 0.0 2.58 11.9 0.0 0.0 -4,-6 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000060803 Gstp1 ENSMUST00000169613 ENSMUSP00000129565 TRANSLATION protein_coding - CCDS29411.1 1 210.0 9.0 6.5 28.4 91.5 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000060803 Gstp1 ENSMUST00000237982 ENSMUSP00000157438 TRANSLATION protein_coding stop - - 160.0 6.0 4.75 0.0 62.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000060803 Gstp1 ENSMUST00000235711 - NO_TRANSLATION retained_intron ENSMUSG00000060803 Gstp1 ENSMUST00000236211 - NO_TRANSLATION retained_intron ENSMUSG00000060803 Gstp1 ENSMUST00000237273 - NO_TRANSLATION retained_intron ENSMUSG00000060803 Gstp1 ENSMUST00000237893 ENSMUSP00000158260 TRANSLATION protein_coding - - - 193.0 6.0 6.0 9.3 86.5 0.0 -4,-5 0.2145 4 15.882 MINOR ENSMUSG00000060803 Gstp1 ENSMUST00000237239 - NO_TRANSLATION retained_intron ENSMUSG00000060803 Gstp1 ENSMUST00000237773 - NO_TRANSLATION retained_intron ENSMUSG00000060803 Gstp1 ENSMUST00000236311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024862 Klc2 ENSMUST00000025798 ENSMUSP00000025798 TRANSLATION protein_coding - - 5 617.0 0.0 7.0 8.2 150.7 0.0 -4,-5 0.7867 19 10.349 ALTERNATIVE:1 ENSMUSG00000024862 Klc2 ENSMUST00000156717 ENSMUSP00000122458 TRANSLATION protein_coding stop - 5 166.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024862 Klc2 ENSMUST00000113728 ENSMUSP00000109357 TRANSLATION protein_coding - - 5 617.0 0.0 7.0 8.2 150.7 0.0 -4,-5 0.7867 19 10.349 ALTERNATIVE:1 ENSMUSG00000024862 Klc2 ENSMUST00000113727 ENSMUSP00000109356 TRANSLATION protein_coding - - 5 617.0 0.0 7.0 8.2 150.7 0.0 -4,-5 0.7867 19 10.349 ALTERNATIVE:1 ENSMUSG00000024862 Klc2 ENSMUST00000116563 ENSMUSP00000112262 TRANSLATION protein_coding - CCDS37889.1 1 619.0 0.0 7.0 10.2 150.7 0.0 -4,-5 1.0 19 11.0 PRINCIPAL:4 ENSMUSG00000024862 Klc2 ENSMUST00000135827 - NO_TRANSLATION retained_intron ENSMUSG00000024862 Klc2 ENSMUST00000137403 - NO_TRANSLATION retained_intron ENSMUSG00000024862 Klc2 ENSMUST00000142255 - NO_TRANSLATION retained_intron ENSMUSG00000024862 Klc2 ENSMUST00000149806 - NO_TRANSLATION retained_intron ENSMUSG00000033610 Pank1 ENSMUST00000238065 ENSMUSP00000157555 TRANSLATION protein_coding - - - 251.0 19.0 4.5 0.0 321.1 0.0 -4,-5 0.0002 3 11.208 MINOR ENSMUSG00000033610 Pank1 ENSMUST00000112460 ENSMUSP00000108079 TRANSLATION protein_coding - CCDS37966.1 1 373.0 19.0 5.5 30.7 401.0 0.0 -4,-6 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000033610 Pank1 ENSMUST00000237577 - NO_TRANSLATION retained_intron ENSMUSG00000033610 Pank1 ENSMUST00000036584 ENSMUSP00000043562 TRANSLATION protein_coding - CCDS50424.1 1 548.0 19.0 5.5 0.4 401.0 0.0 -4,-1 0.2776 6 18.0 MINOR ENSMUSG00000024726 Carnmt1 ENSMUST00000235736 ENSMUSP00000157942 TRANSLATION nonsense_mediated_decay - - - 68.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000024726 Carnmt1 ENSMUST00000025632 ENSMUSP00000025632 TRANSLATION protein_coding - CCDS29689.1 1 400.0 16.0 7.2 0.4 383.4 0.0 -4,-7 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000024726 Carnmt1 ENSMUST00000236401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071662 Polr2g ENSMUST00000237207 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071662 Polr2g ENSMUST00000235964 ENSMUSP00000158073 TRANSLATION protein_coding - - - 69.0 0.0 2.33 0.0 34.4 0.0 -4,-5 0.0 - 1.692 MINOR ENSMUSG00000071662 Polr2g ENSMUST00000096261 ENSMUSP00000093980 TRANSLATION protein_coding - CCDS29547.1 1 172.0 0.0 4.66 29.9 128.5 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000071662 Polr2g ENSMUST00000236566 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047733 Tmem262 ENSMUST00000149347 ENSMUSP00000116436 TRANSLATION protein_coding stop - 1 110.0 0.0 1.3 0.0 133.1 0.0 1,-4 0.0614 - -2.0 MINOR ENSMUSG00000047733 Tmem262 ENSMUST00000143303 ENSMUSP00000121339 TRANSLATION protein_coding - CCDS50363.1 1 116.0 0.0 2.75 11.5 0.0 0.0 1,-4 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000045045 Lrfn4 ENSMUST00000053597 ENSMUSP00000050039 TRANSLATION protein_coding - CCDS29431.1 1 636.0 0.0 1.0 0.4 176.1 1.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000045045 Lrfn4 ENSMUST00000113822 ENSMUSP00000109453 TRANSLATION protein_coding - CCDS29431.1 1 636.0 0.0 1.0 0.4 176.1 1.0 3,-2 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000025060 Slk ENSMUST00000147841 - NO_TRANSLATION retained_intron ENSMUSG00000025060 Slk ENSMUST00000051691 ENSMUSP00000049977 TRANSLATION protein_coding - CCDS38017.1 1 1233.0 18.0 6.8 0.1 493.4 0.0 -4,-6 1.0 27 18.0 PRINCIPAL:1 ENSMUSG00000025060 Slk ENSMUST00000123816 - NO_TRANSLATION retained_intron ENSMUSG00000025060 Slk ENSMUST00000026043 ENSMUSP00000026043 TRANSLATION protein_coding - CCDS50465.1 1 1202.0 18.0 6.8 0.1 447.1 0.0 -4,-6 0.3061 26 15.222 MINOR ENSMUSG00000025060 Slk ENSMUST00000239141 ENSMUSP00000159128 TRANSLATION protein_coding start/stop - - 98.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0002 3 -2.0 MINOR ENSMUSG00000025060 Slk ENSMUST00000130115 - NO_TRANSLATION retained_intron ENSMUSG00000004054 Map3k11 ENSMUST00000237032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004054 Map3k11 ENSMUST00000235661 ENSMUSP00000158271 TRANSLATION protein_coding stop - - 68.0 2.0 1.5 0.0 76.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004054 Map3k11 ENSMUST00000235727 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004054 Map3k11 ENSMUST00000235891 ENSMUSP00000158463 TRANSLATION nonsense_mediated_decay start - - 543.0 19.0 4.83 0.0 213.7 0.0 -4,-7 0.0004 7 -2.0 MINOR ENSMUSG00000004054 Map3k11 ENSMUST00000004156 ENSMUSP00000004156 TRANSLATION protein_coding - CCDS29476.1 1 850.0 19.0 5.63 3.8 266.3 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000053617 Sh3pxd2a ENSMUST00000237828 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053617 Sh3pxd2a ENSMUST00000081619 ENSMUSP00000080325 TRANSLATION protein_coding - CCDS29891.1 1 1124.0 0.0 6.375 7.3 213.8 0.0 -4,-5 1.0 16 10.0 PRINCIPAL:4 ENSMUSG00000053617 Sh3pxd2a ENSMUST00000111800 ENSMUSP00000107430 TRANSLATION protein_coding - CCDS50464.1 1 1096.0 0.0 6.375 6.1 213.8 0.0 -4,-5 0.9264 16 9.62 ALTERNATIVE:1 ENSMUSG00000053617 Sh3pxd2a ENSMUST00000237796 ENSMUSP00000158543 TRANSLATION protein_coding - - - 991.0 0.0 3.4 3.2 140.5 0.0 -2,0 0.1642 15 2.546 MINOR ENSMUSG00000057270 Or9i2 ENSMUST00000073966 ENSMUSP00000073620 TRANSLATION protein_coding - CCDS29676.1 - 315.0 0.0 1.0 11.4 154.0 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057270 Or9i2 ENSMUST00000215350 ENSMUSP00000151094 TRANSLATION protein_coding - CCDS29676.1 5 315.0 0.0 1.0 11.4 154.0 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057270 Or9i2 ENSMUST00000208493 ENSMUSP00000147096 TRANSLATION protein_coding - CCDS29676.1 2 315.0 0.0 1.0 11.4 154.0 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024972 Lgals12 ENSMUST00000079902 ENSMUSP00000078824 TRANSLATION protein_coding - - 1 301.0 9.0 6.78 5.0 146.7 0.0 -4,-5 0.5985 5 18.48 MINOR ENSMUSG00000024972 Lgals12 ENSMUST00000159983 ENSMUSP00000124610 TRANSLATION protein_coding - CCDS29529.1 1 314.0 9.0 7.28 9.1 146.7 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000024972 Lgals12 ENSMUST00000099729 ENSMUSP00000097318 TRANSLATION protein_coding - CCDS29529.1 1 314.0 9.0 7.28 9.1 146.7 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000037847 Nmrk1 ENSMUST00000042392 ENSMUSP00000037198 TRANSLATION protein_coding - CCDS37931.1 1 195.0 7.0 4.97 6.0 83.5 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000037847 Nmrk1 ENSMUST00000162446 - NO_TRANSLATION retained_intron ENSMUSG00000037847 Nmrk1 ENSMUST00000159572 ENSMUSP00000125384 TRANSLATION protein_coding - - 1 214.0 7.0 4.97 0.0 83.5 0.0 -4,-6 0.0098 2 18.0 MINOR ENSMUSG00000037847 Nmrk1 ENSMUST00000159061 - NO_TRANSLATION retained_intron ENSMUSG00000037847 Nmrk1 ENSMUST00000161080 ENSMUSP00000125565 TRANSLATION nonsense_mediated_decay - - 5 38.0 0.0 0.33 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000037847 Nmrk1 ENSMUST00000237347 ENSMUSP00000158342 TRANSLATION protein_coding - CCDS37931.1 - 195.0 7.0 4.97 6.0 83.5 0.0 -4,-6 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000024965 Fermt3 ENSMUST00000237888 ENSMUSP00000157792 TRANSLATION nonsense_mediated_decay - - - 530.0 0.0 8.05 0.0 100.3 0.0 -4,-5 0.0 16 -2.0 MINOR ENSMUSG00000024965 Fermt3 ENSMUST00000236188 ENSMUSP00000157637 TRANSLATION protein_coding stop - - 93.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024965 Fermt3 ENSMUST00000040772 ENSMUSP00000037858 TRANSLATION protein_coding - CCDS29518.1 1 665.0 0.0 12.05 9.0 193.6 0.0 -4,-5 1.0 23 15.0 PRINCIPAL:1 ENSMUSG00000024965 Fermt3 ENSMUST00000238171 - NO_TRANSLATION retained_intron ENSMUSG00000024965 Fermt3 ENSMUST00000237960 ENSMUSP00000158556 TRANSLATION nonsense_mediated_decay - - - 266.0 0.0 3.75 0.0 0.0 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000032702 Kank1 ENSMUST00000049400 ENSMUSP00000042177 TRANSLATION protein_coding - CCDS37944.1 5 1360.0 0.0 4.75 8.2 169.9 0.0 -4,-5 1.0 23 15.0 PRINCIPAL:1 ENSMUSG00000032702 Kank1 ENSMUST00000146647 ENSMUSP00000116660 TRANSLATION protein_coding stop - 1 1147.0 0.0 0.75 0.0 73.7 0.0 -4,-2 0.0127 22 -2.0 MINOR ENSMUSG00000032702 Kank1 ENSMUST00000137260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032702 Kank1 ENSMUST00000155788 - NO_TRANSLATION retained_intron ENSMUSG00000024725 Ostf1 ENSMUST00000236728 ENSMUSP00000157475 TRANSLATION nonsense_mediated_decay - - - 38.0 0.0 0.566 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024725 Ostf1 ENSMUST00000236615 ENSMUSP00000157998 TRANSLATION protein_coding - - - 212.0 0.0 5.75 0.0 115.9 0.0 -4,-6 0.0702 8 11.898 MINOR ENSMUSG00000024725 Ostf1 ENSMUST00000025631 ENSMUSP00000025631 TRANSLATION protein_coding - CCDS37930.1 1 215.0 0.0 5.8 33.8 115.9 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000024725 Ostf1 ENSMUST00000138860 - NO_TRANSLATION retained_intron ENSMUSG00000024725 Ostf1 ENSMUST00000156908 - NO_TRANSLATION retained_intron ENSMUSG00000024899 Papss2 ENSMUST00000236290 ENSMUSP00000158330 TRANSLATION protein_coding - - - 616.0 38.0 11.0 15.6 640.6 0.0 -4,-7 0.9282 28 20.28 MINOR ENSMUSG00000024899 Papss2 ENSMUST00000235594 ENSMUSP00000157455 TRANSLATION protein_coding - - - 614.0 38.0 11.0 26.6 640.6 0.0 -4,-6 1.0 28 22.0 PRINCIPAL:1 ENSMUSG00000024899 Papss2 ENSMUST00000025833 ENSMUSP00000025833 TRANSLATION protein_coding - CCDS37960.1 1 621.0 38.0 11.0 15.6 636.5 0.0 -4,-7 0.9786 30 20.034 MINOR ENSMUSG00000071661 Zbtb3 ENSMUST00000172175 ENSMUSP00000127746 TRANSLATION protein_coding - CCDS29548.1 1 518.0 7.0 0.0 6.1 104.7 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000003680 Taf6l ENSMUST00000176991 - NO_TRANSLATION retained_intron ENSMUSG00000003680 Taf6l ENSMUST00000177216 ENSMUSP00000135220 TRANSLATION protein_coding - CCDS29546.2 5 623.0 0.0 3.65 3.7 163.1 0.0 -4,-7 1.0 10 9.636 PRINCIPAL:4 ENSMUSG00000003680 Taf6l ENSMUST00000177056 ENSMUSP00000135028 TRANSLATION protein_coding - - 5 616.0 0.0 3.65 4.3 163.1 0.0 -4,-5 0.9111 10 10.0 ALTERNATIVE:2 ENSMUSG00000003680 Taf6l ENSMUST00000176688 - NO_TRANSLATION retained_intron ENSMUSG00000003680 Taf6l ENSMUST00000003777 ENSMUSP00000003777 TRANSLATION protein_coding start - 5 622.0 0.0 3.65 0.0 163.1 0.0 -4,-7 0.1176 10 -2.0 MINOR ENSMUSG00000003680 Taf6l ENSMUST00000176331 - NO_TRANSLATION retained_intron ENSMUSG00000003680 Taf6l ENSMUST00000189739 ENSMUSP00000140136 TRANSLATION protein_coding start - 5 597.0 0.0 3.2 0.0 163.1 0.0 -4,-7 0.1369 8 -2.0 MINOR ENSMUSG00000003680 Taf6l ENSMUST00000176719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003680 Taf6l ENSMUST00000176496 ENSMUSP00000135090 TRANSLATION protein_coding - CCDS57134.1 1 598.0 0.0 3.2 0.0 163.1 0.0 -4,-7 0.2743 8 7.1 MINOR ENSMUSG00000003680 Taf6l ENSMUST00000176080 - NO_TRANSLATION retained_intron ENSMUSG00000003680 Taf6l ENSMUST00000176610 ENSMUSP00000135193 TRANSLATION protein_coding - CCDS29546.2 1 623.0 0.0 3.65 3.7 163.1 0.0 -4,-7 1.0 10 9.636 PRINCIPAL:4 ENSMUSG00000003680 Taf6l ENSMUST00000176747 - NO_TRANSLATION retained_intron ENSMUSG00000095484 Or5b121 ENSMUST00000216709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095484 Or5b121 ENSMUST00000207093 ENSMUSP00000146782 TRANSLATION protein_coding - CCDS29664.1 5 315.0 0.0 1.5 12.5 181.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095484 Or5b121 ENSMUST00000207987 ENSMUSP00000146931 TRANSLATION protein_coding - - 3 359.0 0.0 1.0 0.0 181.3 6.0 -2,-5 0.0428 - 10.002 MINOR ENSMUSG00000095484 Or5b121 ENSMUST00000072219 ENSMUSP00000072076 TRANSLATION protein_coding - CCDS29664.1 - 315.0 0.0 1.5 12.5 181.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095484 Or5b121 ENSMUST00000207904 ENSMUSP00000147226 TRANSLATION protein_coding - CCDS29664.1 3 315.0 0.0 1.5 12.5 181.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054874 Pcnx3 ENSMUST00000141577 ENSMUSP00000116451 TRANSLATION protein_coding start/stop - 3 254.0 0.0 0.0 0.0 0.0 5.0 -4,-6 0.0034 - -2.0 MINOR ENSMUSG00000054874 Pcnx3 ENSMUST00000132420 - NO_TRANSLATION retained_intron ENSMUSG00000054874 Pcnx3 ENSMUST00000135119 - NO_TRANSLATION retained_intron ENSMUSG00000054874 Pcnx3 ENSMUST00000127876 ENSMUSP00000123696 TRANSLATION protein_coding start/stop - 3 240.0 0.0 0.0 0.0 0.0 5.0 -4,-2 0.0034 - -2.0 MINOR ENSMUSG00000054874 Pcnx3 ENSMUST00000137313 ENSMUSP00000115217 TRANSLATION protein_coding start/stop - 3 280.0 0.0 0.0 0.0 0.0 7.0 3,-2 0.0047 3 -2.0 MINOR ENSMUSG00000054874 Pcnx3 ENSMUST00000133136 ENSMUSP00000123666 TRANSLATION nonsense_mediated_decay start - 5 129.0 0.0 0.0 0.0 201.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000054874 Pcnx3 ENSMUST00000113615 ENSMUSP00000109245 TRANSLATION protein_coding - CCDS29475.2 1 2028.0 0.0 0.0 7.1 381.9 17.0 -2,-5 1.0 20 8.0 PRINCIPAL:1 ENSMUSG00000054874 Pcnx3 ENSMUST00000146638 - NO_TRANSLATION retained_intron ENSMUSG00000054874 Pcnx3 ENSMUST00000147161 - NO_TRANSLATION retained_intron ENSMUSG00000054874 Pcnx3 ENSMUST00000068169 ENSMUSP00000063786 TRANSLATION protein_coding - - 1 1620.0 0.0 0.0 0.0 381.9 17.0 -2,-5 0.2197 12 6.0 MINOR ENSMUSG00000054874 Pcnx3 ENSMUST00000145270 ENSMUSP00000116493 TRANSLATION protein_coding start/stop - 1 712.0 0.0 0.0 0.0 0.0 13.0 -4,-7 0.0099 4 -2.0 MINOR ENSMUSG00000054874 Pcnx3 ENSMUST00000124905 - NO_TRANSLATION retained_intron ENSMUSG00000025001 Hells ENSMUST00000128949 - NO_TRANSLATION retained_intron ENSMUSG00000025001 Hells ENSMUST00000127968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025001 Hells ENSMUST00000025965 ENSMUSP00000025965 TRANSLATION protein_coding - CCDS29789.1 1 821.0 4.0 8.13 5.0 273.8 0.0 -4,-5 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000025001 Hells ENSMUST00000145051 ENSMUSP00000116710 TRANSLATION protein_coding stop - 3 209.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025001 Hells ENSMUST00000138292 - NO_TRANSLATION retained_intron ENSMUSG00000025001 Hells ENSMUST00000155465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024785 Rcl1 ENSMUST00000235900 ENSMUSP00000158152 TRANSLATION protein_coding - - - 337.0 0.0 4.948 2.2 317.6 0.0 -4,0 0.0847 4 9.64 MINOR ENSMUSG00000024785 Rcl1 ENSMUST00000064393 ENSMUSP00000067579 TRANSLATION protein_coding - CCDS29731.1 1 373.0 0.0 5.748 22.8 333.9 0.0 -4,0 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000058470 Gm8369 ENSMUST00000079855 ENSMUSP00000132521 TRANSLATION protein_coding - CCDS50396.1 5 166.0 0.0 0.1 0.0 0.0 2.0 -4,-5 0.6675 - 0.402 PRINCIPAL:1 ENSMUSG00000058470 Gm8369 ENSMUST00000185867 - NO_TRANSLATION retained_intron ENSMUSG00000058470 Gm8369 ENSMUST00000188633 ENSMUSP00000141067 TRANSLATION protein_coding - CCDS50396.1 3 166.0 0.0 0.1 0.0 0.0 2.0 -4,-5 0.6675 - 0.402 PRINCIPAL:1 ENSMUSG00000058470 Gm8369 ENSMUST00000189635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058470 Gm8369 ENSMUST00000190498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058470 Gm8369 ENSMUST00000191475 - NO_TRANSLATION retained_intron ENSMUSG00000058470 Gm8369 ENSMUST00000186423 ENSMUSP00000140897 TRANSLATION nonsense_mediated_decay - - 3 80.0 0.0 1.5 0.0 35.9 1.0 -3,-5 0.0789 - -2.0 MINOR ENSMUSG00000055523 Gucy2g ENSMUST00000069183 ENSMUSP00000068253 TRANSLATION protein_coding - CCDS38026.1 1 1100.0 0.0 8.722 0.1 476.1 0.0 -3,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025203 Scd2 ENSMUST00000237039 ENSMUSP00000158244 TRANSLATION nonsense_mediated_decay - - - 215.0 0.0 3.0 0.0 0.0 2.0 -4,-5 0.0017 1 -2.0 MINOR ENSMUSG00000025203 Scd2 ENSMUST00000026221 ENSMUSP00000026221 TRANSLATION protein_coding - CCDS29848.1 1 358.0 0.0 5.0 13.0 56.1 4.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000006435 Neurl1a ENSMUST00000111807 ENSMUSP00000107438 TRANSLATION protein_coding - CCDS50463.1 1 557.0 8.0 1.8 16.7 311.7 0.0 -4,-6 1.0 6 18.0 PRINCIPAL:4 ENSMUSG00000006435 Neurl1a ENSMUST00000235290 ENSMUSP00000158072 TRANSLATION protein_coding - - - 218.0 0.0 1.3 0.0 139.3 0.0 -4,-2 0.0 4 4.998 MINOR ENSMUSG00000006435 Neurl1a ENSMUST00000235326 ENSMUSP00000158008 TRANSLATION protein_coding - - - 275.0 0.0 1.3 0.0 139.3 0.0 -4,-2 0.0 4 4.998 MINOR ENSMUSG00000006435 Neurl1a ENSMUST00000111808 ENSMUSP00000107439 TRANSLATION protein_coding - CCDS29890.1 1 574.0 8.0 1.8 15.4 311.7 0.0 -4,-2 0.9551 6 17.668 ALTERNATIVE:1 ENSMUSG00000071633 Gm4952 ENSMUST00000181868 ENSMUSP00000137934 TRANSLATION protein_coding stop - 5 216.0 0.0 4.75 0.0 293.1 0.0 -4,-7 0.0009 7 -2.0 MINOR ENSMUSG00000071633 Gm4952 ENSMUST00000092931 ENSMUSP00000090607 TRANSLATION protein_coding - CCDS50398.1 1 296.0 0.0 5.75 10.0 438.5 0.0 -4,-7 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000074818 Pdzd7 ENSMUST00000237227 ENSMUSP00000157966 TRANSLATION nonsense_mediated_decay - - - 476.0 0.0 4.173 0.0 115.9 0.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000074818 Pdzd7 ENSMUST00000237833 ENSMUSP00000157695 TRANSLATION nonsense_mediated_decay - - - 409.0 0.0 4.173 0.0 115.9 0.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000074818 Pdzd7 ENSMUST00000237077 ENSMUSP00000157527 TRANSLATION nonsense_mediated_decay - - - 289.0 0.0 3.798 0.0 115.9 0.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000074818 Pdzd7 ENSMUST00000238074 ENSMUSP00000157926 TRANSLATION nonsense_mediated_decay - - - 245.0 0.0 2.798 0.0 57.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000074818 Pdzd7 ENSMUST00000145391 ENSMUSP00000119002 TRANSLATION nonsense_mediated_decay - - 5 553.0 0.0 4.173 0.0 115.9 0.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000074818 Pdzd7 ENSMUST00000038901 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074818 Pdzd7 ENSMUST00000169459 ENSMUSP00000133273 TRANSLATION protein_coding - CCDS57145.1 5 1021.0 0.0 5.711 0.0 152.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000074818 Pdzd7 ENSMUST00000237962 ENSMUSP00000157471 TRANSLATION nonsense_mediated_decay - - - 289.0 0.0 3.798 0.0 115.9 0.0 -4,-7 0.0012 - -2.0 MINOR ENSMUSG00000040451 Sgms1 ENSMUST00000151289 ENSMUSP00000123395 TRANSLATION protein_coding - CCDS29750.1 1 419.0 0.0 5.4 2.9 120.2 9.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000040451 Sgms1 ENSMUST00000126332 - NO_TRANSLATION retained_intron ENSMUSG00000040451 Sgms1 ENSMUST00000131768 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040451 Sgms1 ENSMUST00000152340 ENSMUSP00000119869 TRANSLATION nonsense_mediated_decay - - 2 217.0 0.0 1.6 0.0 23.3 5.0 -4,-5 0.0041 - -2.0 MINOR ENSMUSG00000040451 Sgms1 ENSMUST00000134415 ENSMUSP00000115785 TRANSLATION nonsense_mediated_decay - - 5 220.0 0.0 1.6 0.0 23.3 5.0 -4,-5 0.0041 - -2.0 MINOR ENSMUSG00000040451 Sgms1 ENSMUST00000141252 - NO_TRANSLATION retained_intron ENSMUSG00000040451 Sgms1 ENSMUST00000142618 ENSMUSP00000117336 TRANSLATION protein_coding - CCDS29750.1 1 419.0 0.0 5.4 2.9 120.2 9.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000040451 Sgms1 ENSMUST00000151822 ENSMUSP00000114683 TRANSLATION protein_coding stop - 3 34.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040451 Sgms1 ENSMUST00000099514 ENSMUSP00000097114 TRANSLATION protein_coding - CCDS29750.1 1 419.0 0.0 5.4 2.9 120.2 9.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000040451 Sgms1 ENSMUST00000149107 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040451 Sgms1 ENSMUST00000124012 - NO_TRANSLATION retained_intron ENSMUSG00000040451 Sgms1 ENSMUST00000141655 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040451 Sgms1 ENSMUST00000149934 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040451 Sgms1 ENSMUST00000236410 ENSMUSP00000157976 TRANSLATION nonsense_mediated_decay - - - 293.0 0.0 1.6 0.0 23.3 5.0 -4,-5 0.0041 - -2.0 MINOR ENSMUSG00000040451 Sgms1 ENSMUST00000124483 - NO_TRANSLATION retained_intron ENSMUSG00000024870 Rab1b ENSMUST00000237201 ENSMUSP00000157487 TRANSLATION protein_coding stop - - 254.0 21.0 5.75 0.0 222.3 0.0 -4,-5 0.0402 5 -2.0 MINOR ENSMUSG00000024870 Rab1b ENSMUST00000237438 ENSMUSP00000157879 TRANSLATION protein_coding - - - 182.0 17.0 5.25 0.0 179.4 0.0 -4,-7 0.0004 6 11.76 MINOR ENSMUSG00000024870 Rab1b ENSMUST00000025804 ENSMUSP00000025804 TRANSLATION protein_coding - CCDS29452.1 1 201.0 21.0 5.75 36.9 222.3 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000024870 Rab1b ENSMUST00000236149 ENSMUSP00000158567 TRANSLATION protein_coding - - - 189.0 21.0 4.0 0.0 180.3 0.0 -4,-7 0.0004 1 11.982 MINOR ENSMUSG00000062488 Ifit3b ENSMUST00000076249 ENSMUSP00000075599 TRANSLATION protein_coding - CCDS50423.1 1 403.0 0.0 0.8 0.0 42.3 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000094649 Mplkipl1 ENSMUST00000180168 ENSMUSP00000137574 TRANSLATION protein_coding - CCDS57149.1 - 178.0 0.0 0.0 2.3 74.5 0.0 -4,-6 0.9647 - 7.0 PRINCIPAL:1 ENSMUSG00000096436 Or5an1b ENSMUST00000207241 ENSMUSP00000146333 TRANSLATION protein_coding - CCDS29628.1 2 312.0 0.0 1.0 10.9 184.9 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096436 Or5an1b ENSMUST00000052558 ENSMUSP00000056003 TRANSLATION protein_coding - CCDS29628.1 - 312.0 0.0 1.0 10.9 184.9 4.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024941 Scyl1 ENSMUST00000236978 ENSMUSP00000157476 TRANSLATION protein_coding - CCDS29480.1 - 806.0 0.0 12.89 8.2 50.7 0.0 -4,-5 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000024941 Scyl1 ENSMUST00000235698 ENSMUSP00000157655 TRANSLATION nonsense_mediated_decay start - - 39.0 0.0 0.612 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024941 Scyl1 ENSMUST00000235599 ENSMUSP00000158013 TRANSLATION nonsense_mediated_decay - - - 749.0 0.0 12.89 0.0 50.7 0.0 -4,-5 0.0428 15 -2.0 MINOR ENSMUSG00000024941 Scyl1 ENSMUST00000238178 - NO_TRANSLATION retained_intron ENSMUSG00000024941 Scyl1 ENSMUST00000025890 ENSMUSP00000025890 TRANSLATION protein_coding - - 1 789.0 0.0 12.89 3.2 50.7 0.0 -4,-5 0.4136 15 12.918 MINOR ENSMUSG00000024941 Scyl1 ENSMUST00000237133 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024941 Scyl1 ENSMUST00000235561 ENSMUSP00000158016 TRANSLATION protein_coding stop - - 48.0 0.0 1.698 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024941 Scyl1 ENSMUST00000236275 - NO_TRANSLATION retained_intron ENSMUSG00000024941 Scyl1 ENSMUST00000235615 - NO_TRANSLATION retained_intron ENSMUSG00000024941 Scyl1 ENSMUST00000236297 ENSMUSP00000158525 TRANSLATION protein_coding stop - - 226.0 0.0 5.15 0.0 32.8 0.0 -4,-5 0.0004 4 -2.0 MINOR ENSMUSG00000024941 Scyl1 ENSMUST00000236773 ENSMUSP00000158420 TRANSLATION protein_coding stop - - 775.0 0.0 12.89 0.0 50.7 0.0 -4,-5 0.0558 15 -2.0 MINOR ENSMUSG00000024941 Scyl1 ENSMUST00000236568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024941 Scyl1 ENSMUST00000237453 ENSMUSP00000157546 TRANSLATION protein_coding start/stop - - 195.0 0.0 2.15 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000058216 Gstp3 ENSMUST00000076451 ENSMUSP00000075779 TRANSLATION protein_coding start - 1 210.0 8.0 5.5 5.4 84.9 0.0 -4,-7 0.7406 1 -2.0 MINOR ENSMUSG00000058216 Gstp3 ENSMUST00000189808 ENSMUSP00000140159 TRANSLATION protein_coding - CCDS79668.1 1 210.0 8.0 5.5 5.4 84.9 0.0 -4,-7 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000058216 Gstp3 ENSMUST00000236991 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058216 Gstp3 ENSMUST00000238086 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056999 Ide ENSMUST00000154308 - NO_TRANSLATION retained_intron ENSMUSG00000056999 Ide ENSMUST00000150707 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056999 Ide ENSMUST00000134740 - NO_TRANSLATION retained_intron ENSMUSG00000056999 Ide ENSMUST00000131070 ENSMUSP00000121358 TRANSLATION protein_coding - - 1 1019.0 13.0 22.15 11.4 641.7 0.0 -2,-5 1.0 35 21.0 PRINCIPAL:1 ENSMUSG00000056999 Ide ENSMUST00000154339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091014 Gm5244 ENSMUST00000189517 ENSMUSP00000157906 TRANSLATION protein_coding - - - 113.0 0.0 1.0 34.7 73.4 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024778 Fas ENSMUST00000112472 ENSMUSP00000108091 TRANSLATION protein_coding - CCDS50420.1 1 63.0 0.0 0.4 0.0 0.0 0.0 1,-3 0.0584 - 0.0 MINOR ENSMUSG00000024778 Fas ENSMUST00000025691 ENSMUSP00000025691 TRANSLATION protein_coding - CCDS29758.1 1 327.0 0.0 4.228 0.4 115.3 0.0 1,-3 1.0 6 8.0 PRINCIPAL:2 ENSMUSG00000024778 Fas ENSMUST00000236731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024778 Fas ENSMUST00000235232 ENSMUSP00000158559 TRANSLATION protein_coding - - - 309.0 0.0 4.228 0.0 115.3 0.0 1,-3 0.1485 6 8.0 ALTERNATIVE:2 ENSMUSG00000024778 Fas ENSMUST00000235709 ENSMUSP00000158489 TRANSLATION nonsense_mediated_decay - - - 123.0 0.0 0.4 0.0 0.0 0.0 1,-3 0.0024 - -2.0 MINOR ENSMUSG00000024776 Stambpl1 ENSMUST00000119603 ENSMUSP00000112938 TRANSLATION protein_coding - CCDS29756.1 1 436.0 8.0 7.0 13.2 128.9 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000024776 Stambpl1 ENSMUST00000125232 - NO_TRANSLATION retained_intron ENSMUSG00000024776 Stambpl1 ENSMUST00000130756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024776 Stambpl1 ENSMUST00000129535 ENSMUSP00000115333 TRANSLATION protein_coding stop - 5 112.0 0.0 1.75 0.0 56.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024776 Stambpl1 ENSMUST00000054956 ENSMUSP00000059927 TRANSLATION protein_coding - CCDS29756.1 1 436.0 8.0 7.0 13.2 128.9 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000024776 Stambpl1 ENSMUST00000239240 ENSMUSP00000159218 TRANSLATION protein_coding - CCDS29756.1 - 436.0 8.0 7.0 13.2 128.9 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000061742 Slc22a12 ENSMUST00000129698 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061742 Slc22a12 ENSMUST00000126142 ENSMUSP00000114626 TRANSLATION protein_coding start/stop - 5 274.0 0.0 2.532 0.0 0.0 3.0 0,-3 0.005 4 -2.0 MINOR ENSMUSG00000061742 Slc22a12 ENSMUST00000113451 ENSMUSP00000109078 TRANSLATION protein_coding - CCDS29505.1 1 553.0 0.0 5.732 5.8 82.8 12.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000035342 Lzts2 ENSMUST00000237148 ENSMUSP00000157464 TRANSLATION protein_coding stop - - 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035342 Lzts2 ENSMUST00000237396 ENSMUSP00000158169 TRANSLATION protein_coding stop - - 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035342 Lzts2 ENSMUST00000236377 ENSMUSP00000158363 TRANSLATION protein_coding stop - - 270.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0013 6 -2.0 MINOR ENSMUSG00000035342 Lzts2 ENSMUST00000178087 ENSMUSP00000136405 TRANSLATION protein_coding - CCDS29855.1 1 671.0 0.0 0.0 5.1 227.0 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000035342 Lzts2 ENSMUST00000039016 ENSMUSP00000045478 TRANSLATION protein_coding - CCDS29855.1 1 671.0 0.0 0.0 5.1 227.0 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000035342 Lzts2 ENSMUST00000236512 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035342 Lzts2 ENSMUST00000237043 ENSMUSP00000158403 TRANSLATION protein_coding - - - 283.0 0.0 0.0 0.0 76.5 0.0 -4,-5 0.0004 4 0.0 MINOR ENSMUSG00000035342 Lzts2 ENSMUST00000179108 ENSMUSP00000137571 TRANSLATION protein_coding - CCDS29855.1 1 671.0 0.0 0.0 5.1 227.0 0.0 -4,-5 1.0 7 8.0 PRINCIPAL:1 ENSMUSG00000048612 Myof ENSMUST00000224560 ENSMUSP00000153534 TRANSLATION nonsense_mediated_decay start - - 85.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000048612 Myof ENSMUST00000172095 ENSMUSP00000129792 TRANSLATION protein_coding - - 5 2048.0 22.0 10.349 10.2 665.0 1.0 -4,-5 0.8554 76 20.358 MINOR ENSMUSG00000048612 Myof ENSMUST00000224518 - NO_TRANSLATION retained_intron ENSMUSG00000048612 Myof ENSMUST00000225159 ENSMUSP00000153201 TRANSLATION protein_coding start - - 1307.0 7.0 4.67 0.0 390.0 1.0 -4,-5 0.0178 44 -2.0 MINOR ENSMUSG00000048612 Myof ENSMUST00000223650 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048612 Myof ENSMUST00000225435 - NO_TRANSLATION retained_intron ENSMUSG00000048612 Myof ENSMUST00000226084 - NO_TRANSLATION retained_intron ENSMUSG00000048612 Myof ENSMUST00000226068 ENSMUSP00000153225 TRANSLATION protein_coding - - - 2061.0 22.0 10.349 16.4 665.5 1.0 -4,-5 0.9465 78 22.0 PRINCIPAL:1 ENSMUSG00000048612 Myof ENSMUST00000041475 ENSMUSP00000045036 TRANSLATION protein_coding - CCDS37970.1 2 2048.0 22.0 10.349 10.2 665.0 1.0 -4,-5 1.0 78 20.358 MINOR ENSMUSG00000048612 Myof ENSMUST00000225287 - NO_TRANSLATION retained_intron ENSMUSG00000048612 Myof ENSMUST00000224900 ENSMUSP00000153590 TRANSLATION protein_coding start - - 186.0 0.0 0.0 0.0 93.7 1.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000048612 Myof ENSMUST00000224580 - NO_TRANSLATION retained_intron ENSMUSG00000118124 Gm50139 ENSMUST00000237654 ENSMUSP00000158097 TRANSLATION nonsense_mediated_decay,RT start - - 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000117666 Gm550 ENSMUST00000235513 ENSMUSP00000158551 TRANSLATION protein_coding - - - 184.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5824 - 0.0 PRINCIPAL:1 ENSMUSG00000117666 Gm550 ENSMUST00000237778 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067229 Cyp2c66 ENSMUST00000087234 ENSMUSP00000084487 TRANSLATION protein_coding - CCDS29792.1 1 490.0 52.0 9.5 4.1 520.5 0.0 0,-4 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000067229 Cyp2c66 ENSMUST00000146494 ENSMUSP00000120397 TRANSLATION nonsense_mediated_decay - - 1 68.0 0.0 1.4 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000024650 Slc22a6 ENSMUST00000010250 ENSMUSP00000010250 TRANSLATION protein_coding - CCDS29538.1 1 545.0 0.0 5.25 8.8 107.9 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000041180 Hectd2 ENSMUST00000155594 ENSMUSP00000120791 TRANSLATION nonsense_mediated_decay start - 5 360.0 0.0 6.25 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000041180 Hectd2 ENSMUST00000177381 ENSMUSP00000134964 TRANSLATION nonsense_mediated_decay start - 5 194.0 0.0 4.75 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000041180 Hectd2 ENSMUST00000141503 - NO_TRANSLATION retained_intron ENSMUSG00000041180 Hectd2 ENSMUST00000155447 - NO_TRANSLATION retained_intron ENSMUSG00000041180 Hectd2 ENSMUST00000142404 - NO_TRANSLATION retained_intron ENSMUSG00000041180 Hectd2 ENSMUST00000149629 - NO_TRANSLATION retained_intron ENSMUSG00000041180 Hectd2 ENSMUST00000047247 ENSMUSP00000042646 TRANSLATION protein_coding - CCDS29773.1 1 774.0 0.0 16.83 6.9 284.0 0.0 -4,-5 1.0 4 8.0 PRINCIPAL:4 ENSMUSG00000041180 Hectd2 ENSMUST00000139215 ENSMUSP00000117273 TRANSLATION nonsense_mediated_decay - - 1 90.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000041180 Hectd2 ENSMUST00000169036 ENSMUSP00000128387 TRANSLATION protein_coding - CCDS50425.1 1 775.0 0.0 16.83 6.9 284.0 0.0 -4,-5 0.999 4 8.0 ALTERNATIVE:1 ENSMUSG00000094846 Or5b123 ENSMUST00000076856 ENSMUSP00000076128 TRANSLATION protein_coding - CCDS29666.1 - 315.0 0.0 3.0 12.5 185.4 10.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094846 Or5b123 ENSMUST00000217061 ENSMUSP00000149988 TRANSLATION protein_coding - CCDS29666.1 5 315.0 0.0 3.0 12.5 185.4 10.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094846 Or5b123 ENSMUST00000208347 ENSMUSP00000146516 TRANSLATION protein_coding stop - 5 111.0 0.0 1.0 0.0 78.0 5.0 -2,-4 0.0037 - -2.0 MINOR ENSMUSG00000094846 Or5b123 ENSMUST00000216688 ENSMUSP00000150752 TRANSLATION protein_coding - - 5 272.0 0.0 2.0 0.0 174.3 9.0 -2,-4 0.0097 - 9.336 MINOR ENSMUSG00000094846 Or5b123 ENSMUST00000209005 ENSMUSP00000146726 TRANSLATION protein_coding - - 3 272.0 0.0 2.0 0.0 174.3 9.0 -2,-4 0.0097 - 9.336 MINOR ENSMUSG00000050815 Or5a3 ENSMUST00000214153 ENSMUSP00000150555 TRANSLATION protein_coding - CCDS29630.1 5 318.0 0.0 1.0 6.6 176.4 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050815 Or5a3 ENSMUST00000059033 ENSMUSP00000061963 TRANSLATION protein_coding - CCDS29630.1 - 318.0 0.0 1.0 6.6 176.4 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050815 Or5a3 ENSMUST00000216506 ENSMUSP00000150739 TRANSLATION protein_coding - CCDS29630.1 5 318.0 0.0 1.0 6.6 176.4 6.0 -2,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000046138 9930021J03Rik ENSMUST00000177155 ENSMUSP00000135473 TRANSLATION protein_coding - - 5 2027.0 0.0 0.465 0.0 21.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046138 9930021J03Rik ENSMUST00000175726 ENSMUSP00000135696 TRANSLATION protein_coding start - 5 1972.0 0.0 0.165 0.0 21.1 0.0 -4,-7 0.3848 - -2.0 MINOR ENSMUSG00000046138 9930021J03Rik ENSMUST00000176773 ENSMUSP00000135025 TRANSLATION nonsense_mediated_decay start - 5 130.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046138 9930021J03Rik ENSMUST00000175764 ENSMUSP00000135031 TRANSLATION protein_coding start - 5 1327.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.041 - -2.0 MINOR ENSMUSG00000048356 Or1s2 ENSMUST00000219412 ENSMUSP00000151386 TRANSLATION protein_coding - CCDS29672.1 - 317.0 0.0 1.0 7.3 191.5 6.0 -4,-7 1.0 - 10.0 PRINCIPAL:4 ENSMUSG00000048356 Or1s2 ENSMUST00000057390 ENSMUSP00000054924 TRANSLATION protein_coding - - - 315.0 0.0 1.0 7.3 191.5 6.0 -4,-7 0.9009 - 10.0 ALTERNATIVE:1 ENSMUSG00000048356 Or1s2 ENSMUST00000209137 ENSMUSP00000146523 TRANSLATION protein_coding - - 5 315.0 0.0 1.0 7.3 191.5 6.0 -4,-7 0.9009 - 10.0 ALTERNATIVE:1 ENSMUSG00000024987 Cyp26a1 ENSMUST00000236500 - NO_TRANSLATION retained_intron ENSMUSG00000024987 Cyp26a1 ENSMUST00000025946 ENSMUSP00000025946 TRANSLATION protein_coding - CCDS29780.1 1 497.0 27.0 3.5 20.9 223.0 0.0 0,-4 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000033207 Mamdc2 ENSMUST00000236349 ENSMUSP00000157505 TRANSLATION nonsense_mediated_decay - - - 217.0 0.0 1.125 0.0 101.4 0.0 4,-1 0.0 1 -2.0 MINOR ENSMUSG00000033207 Mamdc2 ENSMUST00000036069 ENSMUSP00000045432 TRANSLATION protein_coding - CCDS29707.1 1 686.0 0.0 2.505 12.8 452.4 0.0 4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000090840 Tex54 ENSMUST00000163172 ENSMUSP00000130094 TRANSLATION protein_coding - CCDS50382.1 1 86.0 0.0 0.0 1.9 0.0 0.0 -4,-5 0.8974 1 1.0 PRINCIPAL:1 ENSMUSG00000090840 Tex54 ENSMUST00000187020 - NO_TRANSLATION retained_intron ENSMUSG00000024729 Ms4a20 ENSMUST00000249230 ENSMUSP00000159612 TRANSLATION protein_coding - - - 161.0 0.0 2.96 0.0 0.0 8.0 -4,-5 0.0312 - 4.002 MINOR ENSMUSG00000024729 Ms4a20 ENSMUST00000249235 ENSMUSP00000159617 TRANSLATION protein_coding - - - 133.0 0.0 2.0 0.0 0.0 8.0 -4,-5 0.03 - 2.082 MINOR ENSMUSG00000024729 Ms4a20 ENSMUST00000249234 ENSMUSP00000159616 TRANSLATION nonsense_mediated_decay - - - 97.0 0.0 1.3 0.0 0.0 3.0 -4,-7 0.0341 - -2.0 MINOR ENSMUSG00000024729 Ms4a20 ENSMUST00000249236 ENSMUSP00000159618 TRANSLATION protein_coding - - - 199.0 0.0 3.66 0.0 0.0 12.0 -4,-7 0.0658 - 5.4 ALTERNATIVE:2 ENSMUSG00000024729 Ms4a20 ENSMUST00000249232 ENSMUSP00000159614 TRANSLATION protein_coding - - - 103.0 0.0 1.3 0.0 0.0 4.0 -4,-7 0.0382 - 0.678 MINOR ENSMUSG00000024729 Ms4a20 ENSMUST00000025635 ENSMUSP00000025635 TRANSLATION protein_coding - CCDS50393.1 1 209.0 0.0 3.96 0.0 0.0 12.0 -4,-7 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000024729 Ms4a20 ENSMUST00000249231 ENSMUSP00000159613 TRANSLATION protein_coding - - - 199.0 0.0 3.66 0.0 0.0 12.0 -4,-7 0.0658 - 5.4 ALTERNATIVE:2 ENSMUSG00000024729 Ms4a20 ENSMUST00000249237 ENSMUSP00000159619 TRANSLATION nonsense_mediated_decay - - - 91.0 0.0 1.3 0.0 0.0 3.0 -4,-7 0.0334 - -2.0 MINOR ENSMUSG00000024729 Ms4a20 ENSMUST00000188756 - NO_TRANSLATION retained_intron ENSMUSG00000024729 Ms4a20 ENSMUST00000249233 ENSMUSP00000159615 TRANSLATION protein_coding - - - 191.0 0.0 3.3 0.0 0.0 12.0 -4,-7 0.0444 - 4.68 MINOR ENSMUSG00000024767 Otub1 ENSMUST00000142085 ENSMUSP00000122945 TRANSLATION protein_coding stop - 3 95.0 0.0 2.83 0.0 94.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024767 Otub1 ENSMUST00000123743 - NO_TRANSLATION retained_intron ENSMUSG00000024767 Otub1 ENSMUST00000127241 - NO_TRANSLATION retained_intron ENSMUSG00000024767 Otub1 ENSMUST00000123594 ENSMUSP00000115195 TRANSLATION protein_coding - - 5 241.0 0.0 5.33 6.8 291.6 0.0 -4,-5 0.2581 10 12.56 MINOR ENSMUSG00000024767 Otub1 ENSMUST00000025679 ENSMUSP00000025679 TRANSLATION protein_coding - CCDS29520.1 1 271.0 0.0 5.66 20.0 291.0 0.0 -4,-5 1.0 10 15.964 PRINCIPAL:1 ENSMUSG00000018820 Zfyve27 ENSMUST00000168130 ENSMUSP00000129561 TRANSLATION protein_coding stop - 3 192.0 0.0 0.0 0.0 0.0 2.0 -2,-4 0.0021 3 -2.0 MINOR ENSMUSG00000018820 Zfyve27 ENSMUST00000166788 - NO_TRANSLATION retained_intron ENSMUSG00000018820 Zfyve27 ENSMUST00000164460 - NO_TRANSLATION retained_intron ENSMUSG00000018820 Zfyve27 ENSMUST00000099443 ENSMUSP00000097042 TRANSLATION protein_coding - CCDS50440.1 1 408.0 9.0 2.2 8.0 32.2 4.0 -4,-5 1.0 7 17.0 PRINCIPAL:4 ENSMUSG00000018820 Zfyve27 ENSMUST00000170184 - NO_TRANSLATION retained_intron ENSMUSG00000018820 Zfyve27 ENSMUST00000169536 ENSMUSP00000130684 TRANSLATION protein_coding - CCDS29825.2 1 415.0 9.0 2.2 7.3 32.2 4.0 -4,-5 0.9472 7 16.7 ALTERNATIVE:1 ENSMUSG00000018820 Zfyve27 ENSMUST00000165783 - NO_TRANSLATION retained_intron ENSMUSG00000018820 Zfyve27 ENSMUST00000164455 - NO_TRANSLATION retained_intron ENSMUSG00000024694 Keg1 ENSMUST00000147335 - NO_TRANSLATION retained_intron ENSMUSG00000024694 Keg1 ENSMUST00000025598 ENSMUSP00000025598 TRANSLATION protein_coding - CCDS29636.1 1 295.0 0.0 7.58 11.0 440.2 0.0 -4,-6 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000024694 Keg1 ENSMUST00000138545 ENSMUSP00000116555 TRANSLATION protein_coding stop - 2 227.0 0.0 5.5 0.0 300.6 0.0 -4,-7 0.0007 9 -2.0 MINOR ENSMUSG00000024694 Keg1 ENSMUST00000123407 - NO_TRANSLATION retained_intron ENSMUSG00000024694 Keg1 ENSMUST00000128987 - NO_TRANSLATION retained_intron ENSMUSG00000024694 Keg1 ENSMUST00000154822 ENSMUSP00000119879 TRANSLATION protein_coding stop - 3 221.0 0.0 5.5 0.0 289.6 0.0 -4,-7 0.001 9 -2.0 MINOR ENSMUSG00000024694 Keg1 ENSMUST00000152017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071629 Or5b120 ENSMUST00000214274 ENSMUSP00000150803 TRANSLATION protein_coding - CCDS29663.1 5 315.0 0.0 1.0 12.5 179.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071629 Or5b120 ENSMUST00000217001 ENSMUSP00000149565 TRANSLATION protein_coding - CCDS29663.1 2 315.0 0.0 1.0 12.5 179.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034459 Ifit1 ENSMUST00000102824 ENSMUSP00000099888 TRANSLATION protein_coding - CCDS29766.1 1 463.0 0.0 1.0 1.8 34.3 0.0 -4,-5 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000090369 4933411K16Rik ENSMUST00000164518 ENSMUSP00000131279 TRANSLATION protein_coding - CCDS50438.1 - 304.0 0.0 0.2 0.1 0.0 0.0 -4,-6 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000024781 Lipa ENSMUST00000178114 ENSMUSP00000136967 TRANSLATION protein_coding - CCDS29760.1 1 397.0 7.0 7.9 7.3 103.2 0.0 3,-2 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000024781 Lipa ENSMUST00000237617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024781 Lipa ENSMUST00000049572 ENSMUSP00000053270 TRANSLATION protein_coding - CCDS29760.1 1 397.0 7.0 7.9 7.3 103.2 0.0 3,-2 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000024781 Lipa ENSMUST00000237497 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024781 Lipa ENSMUST00000237513 - NO_TRANSLATION retained_intron ENSMUSG00000024781 Lipa ENSMUST00000236641 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024672 Ms4a7 ENSMUST00000025574 ENSMUSP00000025574 TRANSLATION protein_coding - CCDS70935.1 1 267.0 0.0 2.15 0.0 117.6 3.0 -4,-5 0.324 - 8.0 ALTERNATIVE:2 ENSMUSG00000024672 Ms4a7 ENSMUST00000056035 ENSMUSP00000054830 TRANSLATION protein_coding - CCDS29597.1 1 215.0 0.0 1.65 0.0 53.6 2.0 -4,-5 0.0227 - 4.602 MINOR ENSMUSG00000024672 Ms4a7 ENSMUST00000067532 ENSMUSP00000064534 TRANSLATION protein_coding - CCDS29598.1 1 234.0 0.0 2.15 0.0 117.6 3.0 -4,-5 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000024672 Ms4a7 ENSMUST00000159269 ENSMUSP00000124911 TRANSLATION protein_coding start - 3 130.0 0.0 0.885 0.0 50.7 1.0 1,-3 0.0071 - -2.0 MINOR ENSMUSG00000024672 Ms4a7 ENSMUST00000162785 - NO_TRANSLATION retained_intron ENSMUSG00000024749 Tmc1 ENSMUST00000236437 ENSMUSP00000158304 TRANSLATION protein_coding - - - 212.0 0.0 0.0 0.0 77.9 2.0 -4,-6 0.0027 - 3.132 MINOR ENSMUSG00000024749 Tmc1 ENSMUST00000039500 ENSMUSP00000040859 TRANSLATION protein_coding - CCDS50403.1 1 757.0 0.0 0.0 0.0 125.7 7.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000024749 Tmc1 ENSMUST00000235605 - NO_TRANSLATION retained_intron ENSMUSG00000024749 Tmc1 ENSMUST00000235546 - NO_TRANSLATION retained_intron ENSMUSG00000025085 Ablim1 ENSMUST00000079360 ENSMUSP00000078336 TRANSLATION protein_coding - CCDS38027.1 5 861.0 31.0 7.375 0.0 699.5 0.0 -4,-7 0.2649 32 17.544 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000099294 ENSMUSP00000096897 TRANSLATION protein_coding - CCDS70964.1 5 654.0 31.0 7.366 7.6 646.6 0.0 -4,-5 0.7594 28 16.352 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000134430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025085 Ablim1 ENSMUST00000111526 ENSMUSP00000107151 TRANSLATION protein_coding - - 5 400.0 2.0 2.65 1.0 277.1 0.0 -4,-5 0.013 19 0.0 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000128212 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025085 Ablim1 ENSMUST00000111546 ENSMUSP00000107172 TRANSLATION protein_coding - CCDS50479.1 5 701.0 31.0 7.366 5.5 703.1 0.0 -4,-5 1.0 31 19.106 PRINCIPAL:1 ENSMUSG00000025085 Ablim1 ENSMUST00000111559 ENSMUSP00000107184 TRANSLATION protein_coding - - 5 714.0 31.0 7.3 0.0 703.1 0.0 -4,-5 0.1536 31 17.61 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000111558 ENSMUSP00000107183 TRANSLATION protein_coding - - 5 744.0 31.0 7.375 1.1 704.9 0.0 -4,-5 0.2629 33 17.898 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000111529 ENSMUSP00000107154 TRANSLATION protein_coding - CCDS84456.1 5 426.0 2.0 2.8 5.5 277.9 0.0 -4,-5 0.428 19 1.364 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000111544 ENSMUSP00000107169 TRANSLATION protein_coding - CCDS70963.1 5 668.0 31.0 7.366 6.6 452.7 0.0 -4,-5 0.6952 30 13.546 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000150425 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025085 Ablim1 ENSMUST00000111524 ENSMUSP00000107149 TRANSLATION protein_coding - - 1 268.0 25.0 4.0 0.0 141.8 0.0 -4,-6 0.0 10 1.998 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000111528 ENSMUSP00000107153 TRANSLATION protein_coding - - 5 454.0 2.0 2.875 2.0 277.9 0.0 -4,-5 0.0715 21 0.304 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000137389 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025085 Ablim1 ENSMUST00000133369 ENSMUSP00000117798 TRANSLATION protein_coding start/stop - 3 292.0 25.0 4.0 0.0 141.8 0.0 -4,-7 0.0 10 -2.0 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000156316 - NO_TRANSLATION retained_intron ENSMUSG00000025085 Ablim1 ENSMUST00000133782 - NO_TRANSLATION retained_intron ENSMUSG00000025085 Ablim1 ENSMUST00000127198 - NO_TRANSLATION retained_intron ENSMUSG00000025085 Ablim1 ENSMUST00000111555 ENSMUSP00000107180 TRANSLATION protein_coding - - 5 777.0 31.0 7.3 2.1 703.1 0.0 -4,-7 0.2808 31 17.944 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000104902 ENSMUSP00000127818 TRANSLATION protein_coding - CCDS50478.1 5 545.0 2.0 2.875 0.1 528.0 0.0 -4,-5 0.0176 21 0.0 MINOR ENSMUSG00000025085 Ablim1 ENSMUST00000111550 ENSMUSP00000107175 TRANSLATION protein_coding - - 5 682.0 31.0 7.441 1.8 646.6 0.0 -4,-5 0.279 30 14.744 MINOR ENSMUSG00000045932 Ifit2 ENSMUST00000102826 ENSMUSP00000099890 TRANSLATION protein_coding - CCDS29761.1 1 470.0 0.0 2.0 0.3 28.1 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000045932 Ifit2 ENSMUST00000149829 ENSMUSP00000120411 TRANSLATION protein_coding stop - 3 43.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044040 Or9q2 ENSMUST00000217384 ENSMUSP00000149151 TRANSLATION protein_coding - CCDS29673.1 5 314.0 0.0 1.0 14.5 157.7 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000044040 Or9q2 ENSMUST00000061993 ENSMUSP00000053465 TRANSLATION protein_coding - CCDS29673.1 - 314.0 0.0 1.0 14.5 157.7 6.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000118668 Rps6ka4 ENSMUST00000239531 - NO_TRANSLATION retained_intron ENSMUSG00000118668 Rps6ka4 ENSMUST00000239532 - NO_TRANSLATION retained_intron ENSMUSG00000118668 Rps6ka4 ENSMUST00000239528 - NO_TRANSLATION retained_intron ENSMUSG00000118668 Rps6ka4 ENSMUST00000239530 ENSMUSP00000159424 TRANSLATION nonsense_mediated_decay - - - 50.0 1.0 0.93 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000118668 Rps6ka4 ENSMUST00000239527 ENSMUSP00000159422 TRANSLATION protein_coding - CCDS37899.1 - 773.0 37.0 11.9 6.6 465.1 0.0 -4,-5 1.0 15 20.0 PRINCIPAL:1 ENSMUSG00000118668 Rps6ka4 ENSMUST00000239529 ENSMUSP00000159423 TRANSLATION nonsense_mediated_decay - - - 48.0 2.0 0.43 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024889 Rce1 ENSMUST00000025823 ENSMUSP00000025823 TRANSLATION protein_coding - CCDS29432.1 1 329.0 0.0 7.7 10.6 59.2 19.0 -4,-2 1.0 3 14.55 PRINCIPAL:1 ENSMUSG00000024889 Rce1 ENSMUST00000224675 ENSMUSP00000153303 TRANSLATION protein_coding - - - 225.0 0.0 5.49 12.3 59.2 15.0 1,-3 0.7518 2 10.578 MINOR ENSMUSG00000024889 Rce1 ENSMUST00000237059 ENSMUSP00000158146 TRANSLATION protein_coding - - - 204.0 0.0 4.66 0.0 36.9 13.0 1,-3 0.0063 2 3.738 MINOR ENSMUSG00000024889 Rce1 ENSMUST00000224707 ENSMUSP00000153695 TRANSLATION protein_coding - - - 225.0 0.0 5.49 12.3 59.2 15.0 1,-3 0.7518 2 10.578 MINOR ENSMUSG00000024889 Rce1 ENSMUST00000236880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024889 Rce1 ENSMUST00000225285 - NO_TRANSLATION retained_intron ENSMUSG00000024889 Rce1 ENSMUST00000225264 ENSMUSP00000153024 TRANSLATION protein_coding start/stop - - 172.0 0.0 5.24 0.0 36.2 14.0 -2,-5 0.0045 2 -2.0 MINOR ENSMUSG00000024889 Rce1 ENSMUST00000237022 ENSMUSP00000157811 TRANSLATION protein_coding - - - 271.0 4.0 3.66 0.0 31.8 9.0 1,-3 0.0053 1 7.222 MINOR ENSMUSG00000024889 Rce1 ENSMUST00000225476 ENSMUSP00000153448 TRANSLATION nonsense_mediated_decay - - - 221.0 0.0 3.875 0.0 0.0 10.0 -4,-2 0.0039 1 -2.0 MINOR ENSMUSG00000024889 Rce1 ENSMUST00000225375 ENSMUSP00000153100 TRANSLATION protein_coding start/stop - - 230.0 0.0 4.245 0.0 31.2 9.0 -2,1 0.0029 1 -2.0 MINOR ENSMUSG00000024889 Rce1 ENSMUST00000225509 - NO_TRANSLATION retained_intron ENSMUSG00000033417 Cacul1 ENSMUST00000238073 - NO_TRANSLATION retained_intron ENSMUSG00000033417 Cacul1 ENSMUST00000111460 ENSMUSP00000107086 TRANSLATION protein_coding - CCDS50483.1 1 304.0 0.0 4.0 0.0 45.7 0.0 -4,-5 0.1034 4 7.2 MINOR ENSMUSG00000033417 Cacul1 ENSMUST00000166712 ENSMUSP00000127014 TRANSLATION protein_coding - CCDS50484.1 5 347.0 0.0 5.4 0.0 44.4 0.0 -4,-5 0.0623 5 9.834 MINOR ENSMUSG00000033417 Cacul1 ENSMUST00000081790 ENSMUSP00000080480 TRANSLATION protein_coding - CCDS38034.1 1 377.0 0.0 6.4 0.1 44.4 0.0 -4,-5 0.846 6 11.832 PRINCIPAL:1 ENSMUSG00000033417 Cacul1 ENSMUST00000237682 - NO_TRANSLATION retained_intron ENSMUSG00000117873 Gm45928 ENSMUST00000236364 ENSMUSP00000157725 TRANSLATION nonsense_mediated_decay,RT - - - 76.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.1352 - -2.0 ALTERNATIVE:2 ENSMUSG00000117873 Gm45928 ENSMUST00000237171 ENSMUSP00000157518 TRANSLATION protein_coding,RT - - - 80.0 0.0 2.58 0.0 0.0 0.0 -4,-5 0.6538 - -2.0 PRINCIPAL:5 ENSMUSG00000035171 1110059E24Rik ENSMUST00000179553 ENSMUSP00000136384 TRANSLATION nonsense_mediated_decay - - 2 35.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000035171 1110059E24Rik ENSMUST00000038830 ENSMUSP00000048395 TRANSLATION protein_coding - CCDS29699.1 1 155.0 18.0 3.0 6.1 110.5 0.0 -4,-7 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000035171 1110059E24Rik ENSMUST00000178523 ENSMUSP00000137564 TRANSLATION protein_coding - - 3 35.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - 1.998 MINOR ENSMUSG00000035171 1110059E24Rik ENSMUST00000178781 - NO_TRANSLATION retained_intron ENSMUSG00000035171 1110059E24Rik ENSMUST00000177577 ENSMUSP00000136688 TRANSLATION protein_coding - - 3 44.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - 1.998 MINOR ENSMUSG00000035171 1110059E24Rik ENSMUST00000180304 ENSMUSP00000135998 TRANSLATION nonsense_mediated_decay start - 5 45.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035171 1110059E24Rik ENSMUST00000178012 ENSMUSP00000136940 TRANSLATION nonsense_mediated_decay start - 3 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035171 1110059E24Rik ENSMUST00000179768 ENSMUSP00000136927 TRANSLATION protein_coding - - 2 108.0 18.0 3.0 0.0 110.5 0.0 -4,-7 0.0679 - 18.0 MINOR ENSMUSG00000035171 1110059E24Rik ENSMUST00000177605 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025217 Btrc ENSMUST00000224439 - NO_TRANSLATION retained_intron ENSMUSG00000025217 Btrc ENSMUST00000224318 ENSMUSP00000153427 TRANSLATION protein_coding stop - - 34.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000025217 Btrc ENSMUST00000225662 - NO_TRANSLATION retained_intron ENSMUSG00000025217 Btrc ENSMUST00000224102 ENSMUSP00000153661 TRANSLATION protein_coding - - - 150.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000025217 Btrc ENSMUST00000111936 ENSMUSP00000107567 TRANSLATION protein_coding - CCDS38002.1 1 569.0 0.0 10.75 18.1 258.4 0.0 -4,-5 1.0 5 12.0 ALTERNATIVE:1 ENSMUSG00000025217 Btrc ENSMUST00000225898 - NO_TRANSLATION retained_intron ENSMUSG00000025217 Btrc ENSMUST00000223684 ENSMUSP00000152926 TRANSLATION protein_coding stop - - 54.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025217 Btrc ENSMUST00000065601 ENSMUSP00000070728 TRANSLATION protein_coding - CCDS29860.1 1 605.0 0.0 10.75 17.0 258.4 0.0 -4,-5 0.954 6 11.744 PRINCIPAL:3 ENSMUSG00000025217 Btrc ENSMUST00000223764 ENSMUSP00000153119 TRANSLATION protein_coding stop - - 111.0 0.0 2.5 0.0 87.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025217 Btrc ENSMUST00000224478 ENSMUSP00000153562 TRANSLATION protein_coding - - - 506.0 0.0 10.75 10.6 258.4 0.0 -4,-5 0.6941 4 10.244 MINOR ENSMUSG00000025217 Btrc ENSMUST00000224053 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040565 Btaf1 ENSMUST00000236343 - NO_TRANSLATION retained_intron ENSMUSG00000040565 Btaf1 ENSMUST00000099494 ENSMUSP00000097093 TRANSLATION protein_coding - CCDS37969.1 1 1848.0 7.0 15.42 22.0 694.2 0.0 -4,-7 1.0 33 22.0 PRINCIPAL:1 ENSMUSG00000040565 Btaf1 ENSMUST00000238041 - NO_TRANSLATION retained_intron ENSMUSG00000024728 Ms4a19 ENSMUST00000181284 ENSMUSP00000137829 TRANSLATION protein_coding - - 3 70.0 0.0 2.0 0.0 0.0 2.0 0,-4 0.0083 - 4.998 MINOR ENSMUSG00000024728 Ms4a19 ENSMUST00000078770 ENSMUSP00000077828 TRANSLATION protein_coding - CCDS50394.1 1 111.0 0.0 2.4 0.0 29.1 2.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024728 Ms4a19 ENSMUST00000181567 ENSMUSP00000137806 TRANSLATION protein_coding - - 1 70.0 0.0 2.0 0.0 0.0 2.0 0,-4 0.0083 - 4.998 MINOR ENSMUSG00000024728 Ms4a19 ENSMUST00000180678 ENSMUSP00000137968 TRANSLATION protein_coding - - 1 70.0 0.0 2.0 0.0 0.0 2.0 0,-4 0.0083 - 4.998 MINOR ENSMUSG00000071650 Ganab ENSMUST00000096246 ENSMUSP00000093965 TRANSLATION protein_coding - CCDS29557.1 1 966.0 0.0 19.1995 2.6 574.5 0.0 2,1 1.0 35 9.0 PRINCIPAL:2 ENSMUSG00000071650 Ganab ENSMUST00000235704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071650 Ganab ENSMUST00000236563 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071650 Ganab ENSMUST00000235274 ENSMUSP00000158122 TRANSLATION protein_coding - - - 944.0 0.0 19.15 2.6 574.5 0.0 2,1 0.5413 34 8.898 ALTERNATIVE:2 ENSMUSG00000071650 Ganab ENSMUST00000236499 - NO_TRANSLATION retained_intron ENSMUSG00000071650 Ganab ENSMUST00000238063 - NO_TRANSLATION retained_intron ENSMUSG00000033768 Nrxn2 ENSMUST00000150792 - NO_TRANSLATION retained_intron ENSMUSG00000033768 Nrxn2 ENSMUST00000155158 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033768 Nrxn2 ENSMUST00000113459 ENSMUSP00000109086 TRANSLATION protein_coding - - 2 353.0 4.0 3.0 0.0 84.3 0.0 0,-2 0.0 4 0.2 MINOR ENSMUSG00000033768 Nrxn2 ENSMUST00000128272 - NO_TRANSLATION retained_intron ENSMUSG00000033768 Nrxn2 ENSMUST00000113462 ENSMUSP00000109089 TRANSLATION protein_coding - CCDS57132.1 1 1703.0 15.0 14.633 2.4 541.6 2.0 3,-1 0.6324 34 13.902 ALTERNATIVE:2 ENSMUSG00000033768 Nrxn2 ENSMUST00000124815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033768 Nrxn2 ENSMUST00000077182 ENSMUSP00000076424 TRANSLATION protein_coding - CCDS57133.1 5 1503.0 15.0 14.8805 2.1 549.9 2.0 3,-1 1.0 32 14.586 PRINCIPAL:2 ENSMUSG00000033768 Nrxn2 ENSMUST00000137166 ENSMUSP00000119762 TRANSLATION protein_coding - - 5 1710.0 15.0 14.303 2.4 538.8 2.0 3,-1 0.4665 34 13.048 MINOR ENSMUSG00000033768 Nrxn2 ENSMUST00000140435 - NO_TRANSLATION retained_intron ENSMUSG00000033768 Nrxn2 ENSMUST00000157014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033768 Nrxn2 ENSMUST00000236610 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033768 Nrxn2 ENSMUST00000137821 ENSMUSP00000122920 TRANSLATION protein_coding start/stop - 3 216.0 4.0 2.798 0.0 79.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000033768 Nrxn2 ENSMUST00000148391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033768 Nrxn2 ENSMUST00000235714 ENSMUSP00000158360 TRANSLATION protein_coding - CCDS57133.1 - 1503.0 15.0 14.8805 2.1 549.9 2.0 3,-1 1.0 32 14.586 PRINCIPAL:2 ENSMUSG00000033768 Nrxn2 ENSMUST00000113458 ENSMUSP00000109085 TRANSLATION protein_coding - - 5 660.0 4.0 3.5 1.1 110.2 2.0 0,-2 0.0677 9 0.071 MINOR ENSMUSG00000033768 Nrxn2 ENSMUST00000113461 ENSMUSP00000109088 TRANSLATION protein_coding - - 5 1640.0 15.0 14.3805 2.0 554.0 2.0 3,-1 0.5613 33 13.712 ALTERNATIVE:2 ENSMUSG00000033768 Nrxn2 ENSMUST00000154580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033768 Nrxn2 ENSMUST00000236635 ENSMUSP00000157405 TRANSLATION protein_coding - - - 1511.0 15.0 14.633 2.1 541.6 2.0 3,-1 0.6726 32 13.688 ALTERNATIVE:2 ENSMUSG00000036450 Hif1an ENSMUST00000131032 - NO_TRANSLATION retained_intron ENSMUSG00000036450 Hif1an ENSMUST00000040455 ENSMUSP00000035326 TRANSLATION protein_coding - CCDS29852.1 1 349.0 4.0 7.25 8.4 136.5 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000024640 Psat1 ENSMUST00000162416 ENSMUSP00000125593 TRANSLATION protein_coding stop - 5 157.0 11.0 3.08 0.0 110.9 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000024640 Psat1 ENSMUST00000160170 - NO_TRANSLATION retained_intron ENSMUSG00000024640 Psat1 ENSMUST00000162233 - NO_TRANSLATION retained_intron ENSMUSG00000024640 Psat1 ENSMUST00000159264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024640 Psat1 ENSMUST00000025542 ENSMUSP00000025542 TRANSLATION protein_coding - CCDS29681.1 1 370.0 17.0 8.58 22.0 242.5 0.0 -4,-5 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000024640 Psat1 ENSMUST00000161707 - NO_TRANSLATION retained_intron ENSMUSG00000024640 Psat1 ENSMUST00000162053 ENSMUSP00000125340 TRANSLATION protein_coding - CCDS57139.1 1 367.0 17.0 7.91 0.0 227.8 0.0 -4,-7 0.0764 15 15.78 MINOR ENSMUSG00000024845 Tmem134 ENSMUST00000127555 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024845 Tmem134 ENSMUST00000150627 ENSMUSP00000158987 TRANSLATION protein_coding - - 5 180.0 0.0 1.4 6.8 113.8 3.0 -4,-5 0.3966 2 9.219 MINOR ENSMUSG00000024845 Tmem134 ENSMUST00000140405 ENSMUSP00000159421 TRANSLATION nonsense_mediated_decay - - 1 119.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000024845 Tmem134 ENSMUST00000138593 ENSMUSP00000159414 TRANSLATION protein_coding - - 5 253.0 0.0 1.9 0.0 144.9 2.0 -4,-7 0.0416 2 10.812 MINOR ENSMUSG00000024845 Tmem134 ENSMUST00000153654 ENSMUSP00000159420 TRANSLATION protein_coding - - 5 94.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000024845 Tmem134 ENSMUST00000139718 - NO_TRANSLATION retained_intron ENSMUSG00000024845 Tmem134 ENSMUST00000140267 ENSMUSP00000159415 TRANSLATION protein_coding - - 1 195.0 0.0 1.9 10.4 163.8 3.0 -4,-5 1.0 2 14.946 PRINCIPAL:1 ENSMUSG00000024845 Tmem134 ENSMUST00000130619 - NO_TRANSLATION retained_intron ENSMUSG00000024845 Tmem134 ENSMUST00000137579 ENSMUSP00000159416 TRANSLATION protein_coding - - 2 128.0 0.0 1.1 0.0 67.7 2.0 -4,-7 0.0 1 3.654 MINOR ENSMUSG00000024845 Tmem134 ENSMUST00000151401 ENSMUSP00000159418 TRANSLATION protein_coding - - 2 152.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0004 1 0.0 MINOR ENSMUSG00000024845 Tmem134 ENSMUST00000139987 ENSMUSP00000159417 TRANSLATION protein_coding - - 1 186.0 0.0 1.9 6.0 164.7 3.0 -4,-5 0.7597 2 13.596 MINOR ENSMUSG00000024845 Tmem134 ENSMUST00000169055 ENSMUSP00000159412 TRANSLATION protein_coding - - 1 180.0 0.0 1.4 6.8 113.8 3.0 -4,-5 0.3966 2 9.219 MINOR ENSMUSG00000024845 Tmem134 ENSMUST00000148807 ENSMUSP00000159419 TRANSLATION nonsense_mediated_decay - - 2 119.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000024845 Tmem134 ENSMUST00000135257 ENSMUSP00000159413 TRANSLATION protein_coding - - 5 162.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0004 - 0.0 MINOR ENSMUSG00000024675 Ms4a4c ENSMUST00000072729 ENSMUSP00000072512 TRANSLATION protein_coding - CCDS29599.1 1 226.0 0.0 4.83 0.3 66.1 6.0 -4,-6 1.0 1 11.616 PRINCIPAL:1 ENSMUSG00000024675 Ms4a4c ENSMUST00000119366 ENSMUSP00000113130 TRANSLATION protein_coding start - 1 184.0 0.0 3.83 0.0 70.6 5.0 -4,-6 0.0389 1 -2.0 MINOR ENSMUSG00000024675 Ms4a4c ENSMUST00000153546 ENSMUSP00000118694 TRANSLATION protein_coding stop - 3 75.0 0.0 1.8 0.0 0.0 1.0 -4,-5 0.0028 - -2.0 MINOR ENSMUSG00000071644 Eef1g ENSMUST00000122932 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071644 Eef1g ENSMUST00000128626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071644 Eef1g ENSMUST00000135025 - NO_TRANSLATION retained_intron ENSMUSG00000071644 Eef1g ENSMUST00000052248 ENSMUSP00000093955 TRANSLATION protein_coding - CCDS29563.1 1 437.0 11.0 7.95 29.2 328.3 0.0 -4,-7 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000071644 Eef1g ENSMUST00000152076 - NO_TRANSLATION retained_intron ENSMUSG00000071644 Eef1g ENSMUST00000127480 - NO_TRANSLATION retained_intron ENSMUSG00000042532 Golga7b ENSMUST00000087123 ENSMUSP00000084362 TRANSLATION protein_coding - CCDS29827.1 1 167.0 0.0 3.6 4.1 116.3 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000042532 Golga7b ENSMUST00000122375 ENSMUSP00000112575 TRANSLATION protein_coding - CCDS29827.1 1 167.0 0.0 3.6 4.1 116.3 0.0 -4,-6 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000024697 Gna14 ENSMUST00000025602 ENSMUSP00000025602 TRANSLATION protein_coding - CCDS29685.1 1 355.0 23.0 7.5 28.2 381.4 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000024697 Gna14 ENSMUST00000237350 ENSMUSP00000158560 TRANSLATION protein_coding - - - 301.0 16.0 6.0 20.6 323.8 0.0 -4,-5 0.4335 6 9.76 MINOR ENSMUSG00000024695 Zfp91 ENSMUST00000038627 ENSMUSP00000037971 TRANSLATION protein_coding - CCDS37927.1 1 572.0 20.0 3.29 8.5 55.5 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000024695 Zfp91 ENSMUST00000137256 - NO_TRANSLATION retained_intron ENSMUSG00000024873 Cnih2 ENSMUST00000235638 ENSMUSP00000157729 TRANSLATION nonsense_mediated_decay - - - 62.0 0.0 1.632 0.0 41.1 1.0 -1,-5 0.0015 2 -2.0 MINOR ENSMUSG00000024873 Cnih2 ENSMUST00000025805 ENSMUSP00000025805 TRANSLATION protein_coding - CCDS29451.1 1 160.0 0.0 4.13 35.8 117.1 2.0 -1,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000060224 Pyroxd2 ENSMUST00000235183 ENSMUSP00000157694 TRANSLATION nonsense_mediated_decay - - - 52.0 6.0 0.93 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000060224 Pyroxd2 ENSMUST00000236659 ENSMUSP00000157893 TRANSLATION protein_coding - - - 587.0 29.0 13.6 12.9 40.6 0.0 -4,0 0.7456 6 19.636 MINOR ENSMUSG00000060224 Pyroxd2 ENSMUST00000238158 - NO_TRANSLATION retained_intron ENSMUSG00000060224 Pyroxd2 ENSMUST00000237747 ENSMUSP00000158428 TRANSLATION protein_coding - - - 164.0 18.0 3.68 0.0 40.9 0.0 -4,-2 0.0007 2 4.956 MINOR ENSMUSG00000060224 Pyroxd2 ENSMUST00000076505 ENSMUSP00000075825 TRANSLATION protein_coding - CCDS37991.1 1 581.0 29.0 13.93 15.1 49.5 0.0 -4,-2 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000024743 Syt7 ENSMUST00000235717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024743 Syt7 ENSMUST00000224135 ENSMUSP00000153132 TRANSLATION protein_coding - CCDS50388.1 - 567.0 21.0 5.0 12.6 181.6 4.0 -4,-7 0.849 16 17.436 ALTERNATIVE:1 ENSMUSG00000024743 Syt7 ENSMUST00000235479 ENSMUSP00000157682 TRANSLATION protein_coding - - - 479.0 21.0 5.0 5.3 181.6 4.0 -4,-7 0.4075 17 15.276 MINOR ENSMUSG00000024743 Syt7 ENSMUST00000225019 - NO_TRANSLATION retained_intron ENSMUSG00000024743 Syt7 ENSMUST00000237745 ENSMUSP00000157394 TRANSLATION nonsense_mediated_decay - - - 122.0 0.0 0.0 0.0 0.0 4.0 -4,-7 0.0045 4 -2.0 MINOR ENSMUSG00000024743 Syt7 ENSMUST00000237366 ENSMUSP00000157495 TRANSLATION protein_coding - - - 520.0 21.0 5.0 1.1 181.6 4.0 -4,-7 0.2772 17 14.028 MINOR ENSMUSG00000024743 Syt7 ENSMUST00000235784 ENSMUSP00000158359 TRANSLATION protein_coding - - - 643.0 21.0 5.0 5.2 181.6 4.0 -4,-7 0.3378 19 15.244 MINOR ENSMUSG00000024743 Syt7 ENSMUST00000073899 ENSMUSP00000073560 TRANSLATION protein_coding - CCDS29575.1 1 403.0 21.0 5.0 14.5 181.6 4.0 -4,-7 1.0 14 18.0 ALTERNATIVE:1 ENSMUSG00000024743 Syt7 ENSMUST00000169121 ENSMUSP00000127973 TRANSLATION protein_coding - - 5 687.0 21.0 5.0 8.6 181.6 4.0 -4,-7 0.6693 22 16.252 MINOR ENSMUSG00000024743 Syt7 ENSMUST00000235303 ENSMUSP00000158202 TRANSLATION nonsense_mediated_decay - - - 122.0 0.0 0.0 0.0 0.0 4.0 -4,-7 0.0045 - -2.0 MINOR ENSMUSG00000024743 Syt7 ENSMUST00000076968 ENSMUSP00000076234 TRANSLATION protein_coding - - 1 611.0 21.0 5.0 9.2 181.6 4.0 -4,-7 0.6841 18 16.428 MINOR ENSMUSG00000024743 Syt7 ENSMUST00000235568 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024743 Syt7 ENSMUST00000225452 ENSMUSP00000153110 TRANSLATION protein_coding - - - 523.0 21.0 5.0 7.1 181.6 4.0 -4,-7 0.5743 20 15.808 MINOR ENSMUSG00000024743 Syt7 ENSMUST00000225861 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024743 Syt7 ENSMUST00000223586 ENSMUSP00000153482 TRANSLATION protein_coding - CCDS29576.1 - 447.0 21.0 5.0 13.6 181.6 4.0 -4,-7 0.898 16 17.732 PRINCIPAL:4 ENSMUSG00000038754 Elovl3 ENSMUST00000237098 ENSMUSP00000157465 TRANSLATION protein_coding - CCDS29871.1 - 271.0 0.0 3.8 9.5 215.0 7.0 -4,-7 1.0 - 14.982 PRINCIPAL:1 ENSMUSG00000038754 Elovl3 ENSMUST00000043739 ENSMUSP00000036357 TRANSLATION protein_coding - - 1 248.0 0.0 3.25 0.0 215.3 7.0 -2,-5 0.0269 - 10.902 MINOR ENSMUSG00000024653 Scgb1a1 ENSMUST00000025554 ENSMUSP00000025554 TRANSLATION protein_coding - CCDS37911.1 1 96.0 0.0 1.5 0.4 72.6 0.0 2,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000025026 Add3 ENSMUST00000237301 ENSMUSP00000158149 TRANSLATION protein_coding - CCDS29900.1 - 706.0 3.0 3.36 12.5 134.4 0.0 -4,-6 1.0 24 14.0 ALTERNATIVE:1 ENSMUSG00000025026 Add3 ENSMUST00000111741 ENSMUSP00000107370 TRANSLATION protein_coding - CCDS50467.1 1 674.0 3.0 3.36 10.1 134.4 0.0 -4,-6 0.9127 25 13.373 PRINCIPAL:3 ENSMUSG00000025026 Add3 ENSMUST00000235133 ENSMUSP00000157508 TRANSLATION protein_coding stop - - 38.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025026 Add3 ENSMUST00000236296 ENSMUSP00000157697 TRANSLATION protein_coding - CCDS29900.1 - 706.0 3.0 3.36 12.5 134.4 0.0 -4,-6 1.0 24 14.0 ALTERNATIVE:1 ENSMUSG00000025026 Add3 ENSMUST00000237153 ENSMUSP00000158206 TRANSLATION protein_coding stop - - 3.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0231 - -2.0 MINOR ENSMUSG00000025026 Add3 ENSMUST00000235754 ENSMUSP00000157677 TRANSLATION protein_coding - - - 700.0 3.0 2.61 0.0 113.6 0.0 -4,-6 0.0414 24 7.5 MINOR ENSMUSG00000025026 Add3 ENSMUST00000237099 ENSMUSP00000158231 TRANSLATION protein_coding stop - - 189.0 0.0 1.0 0.0 23.0 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000025026 Add3 ENSMUST00000025999 ENSMUSP00000025999 TRANSLATION protein_coding - CCDS29900.1 1 706.0 3.0 3.36 12.5 134.4 0.0 -4,-6 1.0 24 14.0 ALTERNATIVE:1 ENSMUSG00000025026 Add3 ENSMUST00000236417 - NO_TRANSLATION retained_intron ENSMUSG00000025026 Add3 ENSMUST00000050096 ENSMUSP00000052245 TRANSLATION protein_coding - CCDS50467.1 1 674.0 3.0 3.36 10.1 134.4 0.0 -4,-6 0.9127 25 13.373 PRINCIPAL:3 ENSMUSG00000025026 Add3 ENSMUST00000237832 ENSMUSP00000157432 TRANSLATION protein_coding - CCDS50467.1 - 674.0 3.0 3.36 10.1 134.4 0.0 -4,-6 0.9127 25 13.373 PRINCIPAL:3 ENSMUSG00000025026 Add3 ENSMUST00000237224 ENSMUSP00000158368 TRANSLATION protein_coding - CCDS50467.1 - 674.0 3.0 3.36 10.1 134.4 0.0 -4,-6 0.9127 25 13.373 PRINCIPAL:3 ENSMUSG00000025026 Add3 ENSMUST00000237430 ENSMUSP00000157955 TRANSLATION protein_coding - CCDS29900.1 - 706.0 3.0 3.36 12.5 134.4 0.0 -4,-6 1.0 24 14.0 ALTERNATIVE:1 ENSMUSG00000025026 Add3 ENSMUST00000237593 ENSMUSP00000158538 TRANSLATION protein_coding stop - - 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025026 Add3 ENSMUST00000238130 ENSMUSP00000158154 TRANSLATION protein_coding - CCDS50467.1 - 674.0 3.0 3.36 10.1 134.4 0.0 -4,-6 0.9127 25 13.373 PRINCIPAL:3 ENSMUSG00000025026 Add3 ENSMUST00000235846 ENSMUSP00000157970 TRANSLATION protein_coding - CCDS50467.1 - 674.0 3.0 3.36 10.1 134.4 0.0 -4,-6 0.9127 25 13.373 PRINCIPAL:3 ENSMUSG00000067297 Ifit1bl2 ENSMUST00000087357 ENSMUSP00000093816 TRANSLATION protein_coding - CCDS29765.1 1 466.0 0.0 1.0 0.1 41.0 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000024857 Cabp2 ENSMUST00000162584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024857 Cabp2 ENSMUST00000159148 ENSMUSP00000125740 TRANSLATION protein_coding - CCDS50348.1 1 203.0 20.0 3.99 2.5 90.8 0.0 -4,-5 0.5876 - 14.712 MINOR ENSMUSG00000024857 Cabp2 ENSMUST00000159593 ENSMUSP00000124607 TRANSLATION protein_coding stop - 5 103.0 6.0 1.33 0.0 31.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024857 Cabp2 ENSMUST00000162908 ENSMUSP00000125255 TRANSLATION protein_coding - CCDS29413.2 1 221.0 20.0 4.09 4.1 90.8 0.0 -4,-2 0.8034 - 15.878 ALTERNATIVE:2 ENSMUSG00000024857 Cabp2 ENSMUST00000159556 ENSMUSP00000124389 TRANSLATION protein_coding - CCDS50349.1 1 168.0 20.0 4.09 4.3 90.8 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000074882 Cyp2c68 ENSMUST00000099472 ENSMUSP00000097071 TRANSLATION protein_coding - CCDS29797.1 1 491.0 32.0 8.8 6.6 501.4 0.0 3,-2 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000071658 Gng3 ENSMUST00000096259 ENSMUSP00000093978 TRANSLATION protein_coding - CCDS29550.1 1 75.0 0.0 2.0 33.8 65.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000047368 Abhd17b ENSMUST00000235332 ENSMUSP00000158374 TRANSLATION protein_coding - - - 162.0 0.0 1.0 3.0 0.0 0.0 -3,-6 0.0423 3 0.602 MINOR ENSMUSG00000047368 Abhd17b ENSMUST00000052556 ENSMUSP00000056099 TRANSLATION protein_coding - CCDS29700.1 5 288.0 3.0 3.83 32.0 28.7 0.0 -3,-6 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000047368 Abhd17b ENSMUST00000236549 - NO_TRANSLATION retained_intron ENSMUSG00000059363 Fxn ENSMUST00000081333 ENSMUSP00000080081 TRANSLATION protein_coding - CCDS29711.1 1 207.0 0.0 3.88 6.7 128.2 0.0 -2,2 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000059363 Fxn ENSMUST00000132688 - NO_TRANSLATION retained_intron ENSMUSG00000059363 Fxn ENSMUST00000123684 ENSMUSP00000117047 TRANSLATION nonsense_mediated_decay - - 1 145.0 0.0 1.8 0.0 0.0 0.0 -2,2 0.0 - -2.0 MINOR ENSMUSG00000016496 Cd274 ENSMUST00000016640 ENSMUSP00000016640 TRANSLATION protein_coding - CCDS29735.1 1 290.0 0.0 4.08 10.3 59.7 0.0 3,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000034336 Ina ENSMUST00000037636 ENSMUSP00000041347 TRANSLATION protein_coding - CCDS38013.1 1 501.0 0.0 1.066 11.8 421.8 0.0 -4,-7 1.0 20 15.0 PRINCIPAL:1 ENSMUSG00000042372 Dmrt3 ENSMUST00000048935 ENSMUSP00000046812 TRANSLATION protein_coding - CCDS29718.1 1 476.0 8.0 0.72 0.8 139.3 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000042372 Dmrt3 ENSMUST00000237821 ENSMUSP00000157889 TRANSLATION protein_coding stop - - 23.0 0.0 0.12 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062314 Or9i1b ENSMUST00000216835 ENSMUSP00000148945 TRANSLATION protein_coding - CCDS29679.1 5 316.0 0.0 1.0 12.3 145.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062314 Or9i1b ENSMUST00000081520 ENSMUSP00000080235 TRANSLATION protein_coding - CCDS29679.1 - 316.0 0.0 1.0 12.3 145.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062314 Or9i1b ENSMUST00000216623 ENSMUSP00000150484 TRANSLATION protein_coding - CCDS29679.1 5 316.0 0.0 1.0 12.3 145.2 7.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063683 Glyat ENSMUST00000123173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063683 Glyat ENSMUST00000157069 - NO_TRANSLATION retained_intron ENSMUSG00000063683 Glyat ENSMUST00000119960 ENSMUSP00000114002 TRANSLATION protein_coding - - 1 262.0 0.0 3.75 2.4 377.5 0.0 -4,-5 0.0678 13 6.68 MINOR ENSMUSG00000063683 Glyat ENSMUST00000044976 ENSMUSP00000043308 TRANSLATION protein_coding - CCDS29633.1 1 296.0 0.0 4.83 6.6 438.5 0.0 -4,-7 1.0 14 14.0 PRINCIPAL:1 ENSMUSG00000063683 Glyat ENSMUST00000155846 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056612 Ppp1r14b ENSMUST00000237084 ENSMUSP00000158340 TRANSLATION protein_coding - - - 202.0 0.0 1.35 0.0 80.4 0.0 -3,-4 0.0 1 7.38 MINOR ENSMUSG00000056612 Ppp1r14b ENSMUST00000235195 - NO_TRANSLATION retained_intron ENSMUSG00000056612 Ppp1r14b ENSMUST00000236218 ENSMUSP00000157762 TRANSLATION protein_coding start - - 181.0 0.0 1.43 0.0 94.7 0.0 -2,-5 0.003 2 -2.0 MINOR ENSMUSG00000056612 Ppp1r14b ENSMUST00000237235 ENSMUSP00000157427 TRANSLATION protein_coding start - - 94.0 0.0 1.35 0.0 80.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000056612 Ppp1r14b ENSMUST00000070850 ENSMUSP00000064129 TRANSLATION protein_coding - CCDS29514.1 1 147.0 0.0 2.43 4.4 113.0 0.0 -3,-4 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000101389 Ms4a4a ENSMUST00000188995 ENSMUSP00000140768 TRANSLATION protein_coding - CCDS79692.1 5 236.0 0.0 4.0 2.1 96.1 0.0 -4,-6 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000074852 Hpse2 ENSMUST00000099428 ENSMUSP00000097026 TRANSLATION protein_coding - CCDS37993.1 1 592.0 0.0 7.7 9.2 0.0 0.0 1,-1 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000074852 Hpse2 ENSMUST00000238153 - NO_TRANSLATION retained_intron ENSMUSG00000074852 Hpse2 ENSMUST00000236823 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094219 Calhm3 ENSMUST00000178630 ENSMUSP00000136302 TRANSLATION protein_coding - - 5 347.0 0.0 2.8 6.9 337.9 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000054200 Ffar4 ENSMUST00000067098 ENSMUSP00000063660 TRANSLATION protein_coding - CCDS29783.1 1 361.0 0.0 1.32 0.0 131.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071657 Bscl2 ENSMUST00000159571 - NO_TRANSLATION retained_intron ENSMUSG00000071657 Bscl2 ENSMUST00000159770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071657 Bscl2 ENSMUST00000162071 - NO_TRANSLATION retained_intron ENSMUSG00000071657 Bscl2 ENSMUST00000086058 ENSMUSP00000083224 TRANSLATION protein_coding - CCDS70931.1 1 383.0 0.0 6.33 0.4 202.7 5.0 -4,-6 0.3825 4 8.0 ALTERNATIVE:2 ENSMUSG00000071657 Bscl2 ENSMUST00000171649 ENSMUSP00000127685 TRANSLATION protein_coding - CCDS29551.2 1 443.0 0.0 6.33 0.1 202.7 5.0 -4,-6 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000071657 Bscl2 ENSMUST00000162580 - NO_TRANSLATION retained_intron ENSMUSG00000071657 Bscl2 ENSMUST00000160897 ENSMUSP00000125250 TRANSLATION nonsense_mediated_decay - - 5 213.0 0.0 2.75 0.0 96.5 2.0 -4,-6 0.0025 1 -2.0 MINOR ENSMUSG00000071657 Bscl2 ENSMUST00000160556 ENSMUSP00000123976 TRANSLATION protein_coding - CCDS70931.1 1 383.0 0.0 6.33 0.4 202.7 5.0 -4,-6 0.3825 4 8.0 ALTERNATIVE:2 ENSMUSG00000071657 Bscl2 ENSMUST00000159634 ENSMUSP00000125422 TRANSLATION protein_coding - CCDS70931.1 1 383.0 0.0 6.33 0.4 202.7 5.0 -4,-6 0.3825 4 8.0 ALTERNATIVE:2 ENSMUSG00000071657 Bscl2 ENSMUST00000159653 ENSMUSP00000123920 TRANSLATION nonsense_mediated_decay start - 3 134.0 0.0 3.58 0.0 90.6 3.0 1,-3 0.0044 2 -2.0 MINOR ENSMUSG00000025216 Lbx1 ENSMUST00000099401 ENSMUSP00000096997 TRANSLATION protein_coding - CCDS29859.1 1 282.0 0.0 0.6 4.5 76.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024924 Vldlr ENSMUST00000167487 ENSMUSP00000127329 TRANSLATION protein_coding - CCDS29721.1 1 873.0 70.0 15.7 8.5 734.1 2.0 2,-3 0.9318 25 16.499 PRINCIPAL:3 ENSMUSG00000024924 Vldlr ENSMUST00000164746 ENSMUSP00000128193 TRANSLATION protein_coding stop - 5 89.0 6.0 1.75 0.0 54.6 0.0 2,-3 0.0008 4 -2.0 MINOR ENSMUSG00000024924 Vldlr ENSMUST00000164509 - NO_TRANSLATION retained_intron ENSMUSG00000024924 Vldlr ENSMUST00000163729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024924 Vldlr ENSMUST00000025866 ENSMUSP00000025866 TRANSLATION nonsense_mediated_decay - - 5 498.0 69.0 9.3 1.0 467.9 0.0 2,-3 0.0204 16 -2.0 MINOR ENSMUSG00000024924 Vldlr ENSMUST00000165761 ENSMUSP00000130382 TRANSLATION protein_coding start/stop - 3 258.0 14.0 6.25 0.0 195.7 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000024924 Vldlr ENSMUST00000172302 ENSMUSP00000126730 TRANSLATION protein_coding - CCDS50411.1 1 845.0 70.0 15.55 10.0 734.1 2.0 2,-3 1.0 24 16.7 ALTERNATIVE:1 ENSMUSG00000024924 Vldlr ENSMUST00000047645 ENSMUSP00000049145 TRANSLATION protein_coding - CCDS84429.1 5 804.0 64.0 14.55 7.7 689.1 2.0 2,-3 0.6353 22 9.332 MINOR ENSMUSG00000099398 Ms4a14 ENSMUST00000187467 ENSMUSP00000140996 TRANSLATION protein_coding - - 5 1232.0 0.0 1.72 0.0 53.5 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000053279 Aldh1a1 ENSMUST00000087638 ENSMUSP00000084918 TRANSLATION protein_coding - CCDS29695.1 1 501.0 27.0 12.33 10.1 609.8 0.0 -4,-5 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000053279 Aldh1a1 ENSMUST00000225337 ENSMUSP00000153410 TRANSLATION protein_coding - CCDS29695.1 - 501.0 27.0 12.33 10.1 609.8 0.0 -4,-5 1.0 20 21.0 PRINCIPAL:1 ENSMUSG00000053279 Aldh1a1 ENSMUST00000224358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053279 Aldh1a1 ENSMUST00000225249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053279 Aldh1a1 ENSMUST00000225313 ENSMUSP00000153011 TRANSLATION protein_coding stop - - 138.0 0.0 3.75 0.0 90.2 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000053279 Aldh1a1 ENSMUST00000224807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025081 Tdrd1 ENSMUST00000078723 ENSMUSP00000077785 TRANSLATION protein_coding - CCDS29922.1 1 1172.0 28.0 9.92 1.8 459.0 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000025081 Tdrd1 ENSMUST00000121249 ENSMUSP00000112786 TRANSLATION protein_coding - CCDS29922.1 1 1172.0 28.0 9.92 1.8 459.0 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000025081 Tdrd1 ENSMUST00000111604 ENSMUSP00000107231 TRANSLATION protein_coding - CCDS29922.1 1 1172.0 28.0 9.92 1.8 459.0 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000025081 Tdrd1 ENSMUST00000111606 ENSMUSP00000107233 TRANSLATION protein_coding - CCDS29922.1 1 1172.0 28.0 9.92 1.8 459.0 0.0 -4,-5 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000075289 Carns1 ENSMUST00000235984 - NO_TRANSLATION retained_intron ENSMUSG00000075289 Carns1 ENSMUST00000235912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075289 Carns1 ENSMUST00000237326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075289 Carns1 ENSMUST00000237988 - NO_TRANSLATION retained_intron ENSMUSG00000075289 Carns1 ENSMUST00000167055 ENSMUSP00000131624 TRANSLATION protein_coding - CCDS50350.1 5 947.0 19.0 0.066 5.7 0.0 0.0 -4,-5 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000075289 Carns1 ENSMUST00000237815 ENSMUSP00000158521 TRANSLATION protein_coding start - - 65.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0138 - -2.0 MINOR ENSMUSG00000075289 Carns1 ENSMUST00000236513 - NO_TRANSLATION retained_intron ENSMUSG00000041491 Cep78 ENSMUST00000235718 ENSMUSP00000157915 TRANSLATION nonsense_mediated_decay - - - 614.0 0.0 3.37 0.0 40.5 0.0 -4,-5 0.0328 4 -2.0 MINOR ENSMUSG00000041491 Cep78 ENSMUST00000047704 ENSMUSP00000037596 TRANSLATION protein_coding - CCDS29682.1 1 790.0 0.0 3.37 5.7 40.5 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000041491 Cep78 ENSMUST00000236749 - NO_TRANSLATION retained_intron ENSMUSG00000024962 Vegfb ENSMUST00000130048 ENSMUSP00000120860 TRANSLATION protein_coding - CCDS50373.1 1 188.0 0.0 3.46 3.2 78.6 0.0 3,-4 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000024962 Vegfb ENSMUST00000025914 ENSMUSP00000025914 TRANSLATION protein_coding - CCDS29516.1 1 207.0 0.0 2.5 3.2 78.6 0.0 3,-4 0.3161 - 11.08 MINOR ENSMUSG00000024962 Vegfb ENSMUST00000147924 - NO_TRANSLATION retained_intron ENSMUSG00000056201 Cfl1 ENSMUST00000236645 - NO_TRANSLATION retained_intron ENSMUSG00000056201 Cfl1 ENSMUST00000209469 ENSMUSP00000147514 TRANSLATION protein_coding - CCDS84409.1 1 166.0 0.0 2.75 34.9 107.4 0.0 -4,-5 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000056201 Cfl1 ENSMUST00000237122 ENSMUSP00000157562 TRANSLATION protein_coding - - - 178.0 0.0 1.95 0.0 91.5 0.0 -4,-5 0.0006 8 9.3 MINOR ENSMUSG00000100937 Nscme3l ENSMUST00000189704 ENSMUSP00000140922 TRANSLATION protein_coding - CCDS79675.1 - 294.0 0.0 0.6 0.0 0.0 0.0 -4,-2 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000067524 Or4d6 ENSMUST00000208391 ENSMUSP00000147015 TRANSLATION protein_coding - - 3 88.0 0.0 2.0 0.0 0.0 3.0 -4,-7 0.0017 - 4.002 MINOR ENSMUSG00000067524 Or4d6 ENSMUST00000087824 ENSMUSP00000085126 TRANSLATION protein_coding - CCDS29622.1 - 314.0 0.0 3.0 8.1 146.2 7.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067524 Or4d6 ENSMUST00000214103 ENSMUSP00000150097 TRANSLATION protein_coding - CCDS29622.1 5 314.0 0.0 3.0 8.1 146.2 7.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043789 Vwce ENSMUST00000236323 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043789 Vwce ENSMUST00000238148 - NO_TRANSLATION retained_intron ENSMUSG00000043789 Vwce ENSMUST00000235831 - NO_TRANSLATION retained_intron ENSMUSG00000043789 Vwce ENSMUST00000235938 ENSMUSP00000158303 TRANSLATION nonsense_mediated_decay start - - 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000043789 Vwce ENSMUST00000055115 ENSMUSP00000056958 TRANSLATION protein_coding - CCDS50390.1 1 929.0 20.0 5.6065 0.4 185.4 0.0 3,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000024957 Kcnk4 ENSMUST00000236443 ENSMUSP00000157625 TRANSLATION protein_coding start - - 64.0 0.0 1.12 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024957 Kcnk4 ENSMUST00000235248 ENSMUSP00000157941 TRANSLATION protein_coding stop - - 99.0 0.0 2.0 0.0 0.0 0.0 3,-2 0.0018 - -2.0 MINOR ENSMUSG00000024957 Kcnk4 ENSMUST00000235836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024957 Kcnk4 ENSMUST00000025908 ENSMUSP00000025908 TRANSLATION protein_coding - CCDS29511.1 1 398.0 0.0 5.33 2.5 142.4 0.0 3,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000024957 Kcnk4 ENSMUST00000237766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024957 Kcnk4 ENSMUST00000237484 ENSMUSP00000157596 TRANSLATION nonsense_mediated_decay - - - 67.0 0.0 1.5 0.0 0.0 0.0 3,-2 0.0008 - -2.0 MINOR ENSMUSG00000024957 Kcnk4 ENSMUST00000235279 ENSMUSP00000157860 TRANSLATION nonsense_mediated_decay start - - 81.0 0.0 1.62 0.0 0.0 0.0 3,-2 0.0008 - -2.0 MINOR ENSMUSG00000025202 Scd3 ENSMUST00000026220 ENSMUSP00000026220 TRANSLATION protein_coding - CCDS29847.1 1 359.0 0.0 5.33 13.8 57.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025202 Scd3 ENSMUST00000237324 ENSMUSP00000157819 TRANSLATION protein_coding - - - 135.0 0.0 2.0 0.0 26.8 0.0 -2,-4 0.0 - 2.784 MINOR ENSMUSG00000067225 Cyp2c54 ENSMUST00000048959 ENSMUSP00000048284 TRANSLATION protein_coding - CCDS29800.1 2 490.0 31.0 9.0 11.4 526.9 0.0 1,-3 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000024764 Naa40 ENSMUST00000237834 - NO_TRANSLATION retained_intron ENSMUSG00000024764 Naa40 ENSMUST00000236769 ENSMUSP00000157616 TRANSLATION protein_coding - - - 191.0 21.0 5.0 2.0 24.9 0.0 -4,-5 0.1344 5 16.194 MINOR ENSMUSG00000024764 Naa40 ENSMUST00000236628 ENSMUSP00000157824 TRANSLATION nonsense_mediated_decay - - - 102.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024764 Naa40 ENSMUST00000235323 - NO_TRANSLATION retained_intron ENSMUSG00000024764 Naa40 ENSMUST00000025675 ENSMUSP00000025675 TRANSLATION protein_coding - CCDS50377.1 1 237.0 21.0 6.0 21.7 24.7 0.0 -4,-5 1.0 5 21.952 PRINCIPAL:1 ENSMUSG00000053799 Exoc6 ENSMUST00000066439 ENSMUSP00000064332 TRANSLATION protein_coding - CCDS29779.1 1 804.0 0.0 5.8725 21.4 354.3 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:4 ENSMUSG00000053799 Exoc6 ENSMUST00000238954 ENSMUSP00000158866 TRANSLATION protein_coding - - - 811.0 0.0 5.8725 10.1 354.3 0.0 -4,-5 0.6845 13 9.784 MINOR ENSMUSG00000053799 Exoc6 ENSMUST00000238817 ENSMUSP00000159143 TRANSLATION protein_coding - - - 802.0 0.0 5.8725 21.4 354.3 0.0 -4,-5 0.8553 13 12.0 ALTERNATIVE:1 ENSMUSG00000048832 Vps37c ENSMUST00000235921 ENSMUSP00000158200 TRANSLATION protein_coding - - - 163.0 0.0 2.43 0.0 82.9 0.0 -4,-5 0.0 4 6.354 MINOR ENSMUSG00000048832 Vps37c ENSMUST00000237240 ENSMUSP00000158315 TRANSLATION protein_coding - - - 51.0 0.0 0.6 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000048832 Vps37c ENSMUST00000087951 ENSMUSP00000085264 TRANSLATION protein_coding - CCDS29585.1 1 352.0 0.0 3.98 2.1 125.3 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000048832 Vps37c ENSMUST00000237437 ENSMUSP00000158277 TRANSLATION protein_coding stop - - 104.0 0.0 2.1 0.0 68.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000048832 Vps37c ENSMUST00000235927 ENSMUSP00000158500 TRANSLATION protein_coding - CCDS29585.1 - 352.0 0.0 3.98 2.1 125.3 0.0 -4,-5 1.0 6 13.0 PRINCIPAL:1 ENSMUSG00000025025 Mxi1 ENSMUST00000237295 - NO_TRANSLATION retained_intron ENSMUSG00000025025 Mxi1 ENSMUST00000235880 ENSMUSP00000157790 TRANSLATION protein_coding - CCDS38023.1 - 192.0 0.0 2.33 2.5 41.7 0.0 -4,-1 0.3231 - 12.336 MINOR ENSMUSG00000025025 Mxi1 ENSMUST00000111737 ENSMUSP00000107366 TRANSLATION protein_coding - CCDS29901.1 1 228.0 0.0 2.33 18.8 41.7 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025025 Mxi1 ENSMUST00000236973 ENSMUSP00000157400 TRANSLATION protein_coding - CCDS38023.1 - 192.0 0.0 2.33 2.5 41.7 0.0 -4,-1 0.3231 - 12.336 MINOR ENSMUSG00000025025 Mxi1 ENSMUST00000025998 ENSMUSP00000025998 TRANSLATION protein_coding - CCDS38023.1 1 192.0 0.0 2.33 2.5 41.7 0.0 -4,-1 0.3231 - 12.336 MINOR ENSMUSG00000025025 Mxi1 ENSMUST00000237480 ENSMUSP00000157822 TRANSLATION protein_coding - - - 182.0 0.0 2.0 1.7 23.6 0.0 -4,-1 0.037 - 8.7 MINOR ENSMUSG00000025025 Mxi1 ENSMUST00000003870 ENSMUSP00000003870 TRANSLATION protein_coding - CCDS38022.1 1 295.0 0.0 2.33 8.8 41.7 0.0 -3,-6 0.7021 - 13.752 MINOR ENSMUSG00000025025 Mxi1 ENSMUST00000235201 ENSMUSP00000158401 TRANSLATION protein_coding - CCDS38023.1 - 192.0 0.0 2.33 2.5 41.7 0.0 -4,-1 0.3231 - 12.336 MINOR ENSMUSG00000025025 Mxi1 ENSMUST00000237837 ENSMUSP00000157666 TRANSLATION protein_coding - - - 84.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000049498 Or5b24 ENSMUST00000056005 ENSMUSP00000056181 TRANSLATION protein_coding - CCDS29645.1 - 314.0 0.0 1.0 12.5 178.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049498 Or5b24 ENSMUST00000214079 ENSMUSP00000149217 TRANSLATION protein_coding - CCDS29645.1 5 314.0 0.0 1.0 12.5 178.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049498 Or5b24 ENSMUST00000208624 ENSMUSP00000146361 TRANSLATION protein_coding - CCDS29645.1 3 314.0 0.0 1.0 12.5 178.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000049498 Or5b24 ENSMUST00000215325 ENSMUSP00000148934 TRANSLATION protein_coding - CCDS29645.1 5 314.0 0.0 1.0 12.5 178.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037263 Aldh3b3 ENSMUST00000189124 ENSMUSP00000140893 TRANSLATION nonsense_mediated_decay - - 1 72.0 0.0 1.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037263 Aldh3b3 ENSMUST00000025794 ENSMUSP00000025794 TRANSLATION protein_coding start - 1 87.0 2.0 1.2 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000037263 Aldh3b3 ENSMUST00000179433 ENSMUSP00000136334 TRANSLATION protein_coding - CCDS57128.1 5 479.0 30.0 10.53 0.0 291.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000094721 Or5b108 ENSMUST00000076832 ENSMUSP00000076107 TRANSLATION protein_coding - CCDS29653.1 - 307.0 0.0 1.0 8.2 174.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094721 Or5b108 ENSMUST00000208533 ENSMUSP00000147174 TRANSLATION protein_coding - CCDS29653.1 2 307.0 0.0 1.0 8.2 174.2 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024991 Eif3a ENSMUST00000237319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024991 Eif3a ENSMUST00000025955 ENSMUSP00000025955 TRANSLATION protein_coding - CCDS38035.1 1 1344.0 0.0 13.75 0.0 81.4 0.0 -4,-5 1.0 51 12.0 PRINCIPAL:1 ENSMUSG00000024991 Eif3a ENSMUST00000235706 - NO_TRANSLATION retained_intron ENSMUSG00000024991 Eif3a ENSMUST00000236622 - NO_TRANSLATION retained_intron ENSMUSG00000024991 Eif3a ENSMUST00000238125 ENSMUSP00000157622 TRANSLATION protein_coding start - - 194.0 0.0 1.33 0.0 0.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000026931 1700019N19Rik ENSMUST00000166692 ENSMUSP00000126241 TRANSLATION protein_coding - - 5 229.0 0.0 1.0 2.5 0.0 0.0 -4,-6 1.0 1 7.0 PRINCIPAL:2 ENSMUSG00000026931 1700019N19Rik ENSMUST00000028299 ENSMUSP00000028299 TRANSLATION protein_coding - CCDS38031.1 1 237.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.3302 1 6.0 ALTERNATIVE:2 ENSMUSG00000024989 Cep55 ENSMUST00000237408 ENSMUSP00000157871 TRANSLATION protein_coding - CCDS29782.1 - 461.0 3.0 1.75 9.2 65.1 0.0 -4,-7 0.9986 10 14.0 ALTERNATIVE:1 ENSMUSG00000024989 Cep55 ENSMUST00000235601 - NO_TRANSLATION retained_intron ENSMUSG00000024989 Cep55 ENSMUST00000116506 ENSMUSP00000112205 TRANSLATION protein_coding - CCDS29782.1 5 461.0 3.0 1.75 9.2 65.1 0.0 -4,-7 0.9986 10 14.0 ALTERNATIVE:1 ENSMUSG00000024989 Cep55 ENSMUST00000236044 ENSMUSP00000157898 TRANSLATION protein_coding - CCDS50429.1 - 462.0 3.0 1.75 9.2 65.1 0.0 -4,-7 1.0 10 14.0 PRINCIPAL:4 ENSMUSG00000024989 Cep55 ENSMUST00000096096 ENSMUSP00000093802 TRANSLATION protein_coding - CCDS50429.1 1 462.0 3.0 1.75 9.2 65.1 0.0 -4,-7 1.0 10 14.0 PRINCIPAL:4 ENSMUSG00000024989 Cep55 ENSMUST00000169673 ENSMUSP00000127961 TRANSLATION protein_coding - CCDS50429.1 1 462.0 3.0 1.75 9.2 65.1 0.0 -4,-7 1.0 10 14.0 PRINCIPAL:4 ENSMUSG00000024905 Tesmin ENSMUST00000127142 ENSMUSP00000122687 TRANSLATION protein_coding - CCDS70912.1 1 295.0 9.0 0.63 0.0 48.2 0.0 -4,-6 0.2697 - 14.0 ALTERNATIVE:2 ENSMUSG00000024905 Tesmin ENSMUST00000151341 ENSMUSP00000114142 TRANSLATION protein_coding - CCDS50339.1 1 277.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0485 - 0.0 MINOR ENSMUSG00000024905 Tesmin ENSMUST00000142193 ENSMUSP00000114171 TRANSLATION protein_coding - CCDS70912.1 1 295.0 9.0 0.63 0.0 48.2 0.0 -4,-6 0.2697 - 14.0 ALTERNATIVE:2 ENSMUSG00000024905 Tesmin ENSMUST00000025840 ENSMUSP00000025840 TRANSLATION protein_coding - CCDS37880.1 1 475.0 9.0 0.63 0.4 48.2 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000121573 ENSMUSG00000121573 ENSMUST00000249245 ENSMUSP00000159625 TRANSLATION protein_coding - - - 45.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000067571 Ms4a15 ENSMUST00000145110 ENSMUSP00000117513 TRANSLATION protein_coding stop - 3 129.0 0.0 1.45 0.0 0.0 2.0 -4,-1 0.0003 - -2.0 MINOR ENSMUSG00000067571 Ms4a15 ENSMUST00000144485 ENSMUSP00000115600 TRANSLATION protein_coding stop - 5 115.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000067571 Ms4a15 ENSMUST00000087923 ENSMUSP00000085234 TRANSLATION protein_coding - CCDS29594.1 1 245.0 0.0 3.95 0.4 78.4 5.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000117975 Itprip ENSMUST00000095998 ENSMUSP00000093697 TRANSLATION protein_coding - CCDS29895.1 1 555.0 0.0 0.0 8.9 57.7 0.0 -2,-5 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000117975 Itprip ENSMUST00000237029 ENSMUSP00000157574 TRANSLATION protein_coding stop - - 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0127 - -2.0 MINOR ENSMUSG00000108889 Or5bb12 ENSMUST00000207679 ENSMUSP00000146540 TRANSLATION protein_coding - - 5 321.0 0.0 1.0 2.4 179.9 5.0 -4,-5 0.8625 - 13.0 PRINCIPAL:1 ENSMUSG00000108889 Or5bb12 ENSMUST00000219261 ENSMUSP00000151777 TRANSLATION protein_coding - - 5 321.0 0.0 1.0 2.4 179.9 5.0 -4,-5 0.8625 - 13.0 PRINCIPAL:1 ENSMUSG00000047656 Trpt1 ENSMUST00000237234 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047656 Trpt1 ENSMUST00000088223 ENSMUSP00000085555 TRANSLATION protein_coding - CCDS50375.1 1 249.0 0.0 4.85 4.2 214.9 0.0 -4,-6 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000024805 Pcgf5 ENSMUST00000224859 ENSMUSP00000153211 TRANSLATION protein_coding start - - 132.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024805 Pcgf5 ENSMUST00000225050 - NO_TRANSLATION retained_intron ENSMUSG00000024805 Pcgf5 ENSMUST00000224772 ENSMUSP00000153066 TRANSLATION protein_coding - - - 255.0 9.0 3.63 20.4 90.1 0.0 -4,-5 0.6002 3 19.326 MINOR ENSMUSG00000024805 Pcgf5 ENSMUST00000224679 ENSMUSP00000153681 TRANSLATION protein_coding - - - 256.0 9.0 3.98 20.4 90.1 0.0 -4,-5 0.6287 3 20.028 MINOR ENSMUSG00000024805 Pcgf5 ENSMUST00000225185 - NO_TRANSLATION retained_intron ENSMUSG00000024805 Pcgf5 ENSMUST00000224805 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024805 Pcgf5 ENSMUST00000225411 ENSMUSP00000153464 TRANSLATION protein_coding - - - 256.0 9.0 3.98 20.4 90.1 0.0 -4,-5 0.6287 3 20.028 MINOR ENSMUSG00000024805 Pcgf5 ENSMUST00000225920 ENSMUSP00000153206 TRANSLATION protein_coding - CCDS29772.1 - 236.0 9.0 3.98 33.0 96.5 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000024805 Pcgf5 ENSMUST00000071267 ENSMUSP00000071245 TRANSLATION protein_coding - CCDS29772.1 1 236.0 9.0 3.98 33.0 96.5 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000024805 Pcgf5 ENSMUST00000062389 ENSMUSP00000058730 TRANSLATION protein_coding - CCDS29772.1 5 236.0 9.0 3.98 33.0 96.5 0.0 -4,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000024805 Pcgf5 ENSMUST00000224971 ENSMUSP00000153342 TRANSLATION protein_coding stop - - 125.0 9.0 3.25 0.0 40.3 0.0 -4,-5 0.0007 2 -2.0 MINOR ENSMUSG00000067519 Or5an1c ENSMUST00000087818 ENSMUSP00000085120 TRANSLATION protein_coding - CCDS29625.1 - 312.0 0.0 1.0 9.8 186.4 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094936 Rbm4 ENSMUST00000178615 ENSMUSP00000136254 TRANSLATION protein_coding - CCDS79671.1 1 143.0 0.0 1.0 9.1 117.9 0.0 -4,-5 0.5883 - 9.633 MINOR ENSMUSG00000094936 Rbm4 ENSMUST00000164376 ENSMUSP00000127564 TRANSLATION protein_coding stop - 3 172.0 0.0 1.8 0.0 141.0 0.0 -4,-5 0.0483 - -2.0 MINOR ENSMUSG00000094936 Rbm4 ENSMUST00000164209 ENSMUSP00000129745 TRANSLATION protein_coding - CCDS79671.1 1 143.0 0.0 1.0 9.1 117.9 0.0 -4,-5 0.5883 - 9.633 MINOR ENSMUSG00000094936 Rbm4 ENSMUST00000180248 ENSMUSP00000137345 TRANSLATION protein_coding - CCDS29436.1 1 361.0 0.0 1.8 11.4 151.9 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000094936 Rbm4 ENSMUST00000179820 - NO_TRANSLATION retained_intron ENSMUSG00000094936 Rbm4 ENSMUST00000237760 ENSMUSP00000158402 TRANSLATION protein_coding - - - 229.0 0.0 1.0 0.0 116.1 0.0 -4,-5 0.0 - 7.188 MINOR ENSMUSG00000094936 Rbm4 ENSMUST00000179189 ENSMUSP00000137174 TRANSLATION protein_coding - CCDS29436.1 2 361.0 0.0 1.8 11.4 151.9 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000041857 Oosp1 ENSMUST00000048214 ENSMUSP00000036529 TRANSLATION protein_coding - CCDS29607.1 1 202.0 0.0 2.33 0.0 0.0 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000041857 Oosp1 ENSMUST00000186557 ENSMUSP00000139444 TRANSLATION protein_coding - - 2 50.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0949 - 0.0 MINOR ENSMUSG00000041857 Oosp1 ENSMUST00000139158 ENSMUSP00000123469 TRANSLATION nonsense_mediated_decay - - 1 92.0 0.0 1.066 0.0 0.0 0.0 4,-1 0.0842 - -2.0 MINOR ENSMUSG00000013663 Pten ENSMUST00000013807 ENSMUSP00000013807 TRANSLATION protein_coding - CCDS29753.1 1 403.0 10.0 5.5 26.1 190.0 0.0 -4,-5 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000013663 Pten ENSMUST00000140014 - NO_TRANSLATION retained_intron ENSMUSG00000013663 Pten ENSMUST00000249247 ENSMUSP00000159627 TRANSLATION protein_coding - - - 572.0 10.0 5.5 2.1 189.7 0.0 -4,-6 0.2283 11 18.158 MINOR ENSMUSG00000013663 Pten ENSMUST00000154806 - NO_TRANSLATION retained_intron ENSMUSG00000024683 Mrpl16 ENSMUST00000237728 - NO_TRANSLATION retained_intron ENSMUSG00000024683 Mrpl16 ENSMUST00000167199 ENSMUSP00000128915 TRANSLATION protein_coding - CCDS29610.1 1 251.0 0.0 2.6 16.5 104.2 0.0 -3,-1 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000092008 Cyp2c69 ENSMUST00000168838 ENSMUSP00000132832 TRANSLATION protein_coding - CCDS50432.1 1 491.0 33.0 9.3 9.2 506.2 0.0 3,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000092008 Cyp2c69 ENSMUST00000238049 ENSMUSP00000157553 TRANSLATION nonsense_mediated_decay - - - 165.0 6.0 2.8 0.0 106.6 0.0 3,-2 0.0004 - -2.0 MINOR ENSMUSG00000025092 Hspa12a ENSMUST00000237786 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025092 Hspa12a ENSMUST00000238055 ENSMUSP00000158170 TRANSLATION protein_coding start/stop - - 199.0 1.0 0.0 0.0 0.0 0.0 -4,-5 0.0148 2 -2.0 MINOR ENSMUSG00000025092 Hspa12a ENSMUST00000235791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025092 Hspa12a ENSMUST00000235263 ENSMUSP00000158098 TRANSLATION protein_coding - - - 222.0 6.0 0.0 0.0 0.0 0.0 -4,-5 0.0213 12 0.0 MINOR ENSMUSG00000025092 Hspa12a ENSMUST00000236453 - NO_TRANSLATION retained_intron ENSMUSG00000025092 Hspa12a ENSMUST00000236429 - NO_TRANSLATION retained_intron ENSMUSG00000025092 Hspa12a ENSMUST00000235662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025092 Hspa12a ENSMUST00000236839 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025092 Hspa12a ENSMUST00000066285 ENSMUSP00000066860 TRANSLATION protein_coding - CCDS38032.1 1 675.0 22.0 0.0600000000000001 14.5 0.0 0.0 -4,-5 1.0 30 16.0 PRINCIPAL:1 ENSMUSG00000025092 Hspa12a ENSMUST00000237297 ENSMUSP00000157441 TRANSLATION protein_coding stop - - 227.0 6.0 0.0 0.0 0.0 0.0 -4,-5 0.0231 13 -2.0 MINOR ENSMUSG00000024661 Fth1 ENSMUST00000235747 - NO_TRANSLATION retained_intron ENSMUSG00000024661 Fth1 ENSMUST00000235407 ENSMUSP00000157595 TRANSLATION protein_coding stop - - 116.0 15.0 3.16 0.0 61.4 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000024661 Fth1 ENSMUST00000237316 - NO_TRANSLATION retained_intron ENSMUSG00000024661 Fth1 ENSMUST00000237465 ENSMUSP00000157992 TRANSLATION protein_coding - - - 136.0 19.0 3.58 0.0 107.1 0.0 -4,-7 0.0003 6 11.484 MINOR ENSMUSG00000024661 Fth1 ENSMUST00000235129 - NO_TRANSLATION retained_intron ENSMUSG00000024661 Fth1 ENSMUST00000235196 ENSMUSP00000158539 TRANSLATION protein_coding - CCDS29567.1 - 182.0 22.0 5.08 16.8 132.4 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000024661 Fth1 ENSMUST00000236403 - NO_TRANSLATION retained_intron ENSMUSG00000024661 Fth1 ENSMUST00000236195 ENSMUSP00000158177 TRANSLATION protein_coding stop - - 59.0 2.0 1.5 0.0 37.5 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000024661 Fth1 ENSMUST00000025563 ENSMUSP00000025563 TRANSLATION protein_coding - CCDS29567.1 1 182.0 22.0 5.08 16.8 132.4 0.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000040901 Kcnk18 ENSMUST00000065204 ENSMUSP00000065713 TRANSLATION protein_coding - CCDS29934.1 1 394.0 0.0 0.9 0.0 118.6 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096370 Gm21992 ENSMUST00000178353 ENSMUSP00000136599 TRANSLATION nonsense_mediated_decay,RT - - 2 118.0 0.0 1.5 7.2 67.5 0.0 -4,-5 1.0 - -2.0 ALTERNATIVE:1 ENSMUSG00000096370 Gm21992 ENSMUST00000172000 ENSMUSP00000128810 TRANSLATION protein_coding,RT - CCDS79673.1 2 477.0 0.0 2.5 0.0 210.7 0.0 -4,-5 0.3725 - -2.0 PRINCIPAL:5 ENSMUSG00000096370 Gm21992 ENSMUST00000178727 - NO_TRANSLATION retained_intron ENSMUSG00000096370 Gm21992 ENSMUST00000178404 ENSMUSP00000137562 TRANSLATION protein_coding,RT start - 3 20.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000096370 Gm21992 ENSMUST00000179909 ENSMUSP00000136623 TRANSLATION protein_coding,RT - CCDS79672.1 5 336.0 0.0 1.5 1.0 98.2 0.0 -4,-5 0.0727 - -2.0 ALTERNATIVE:2 ENSMUSG00000096370 Gm21992 ENSMUST00000177776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067513 Or5an10 ENSMUST00000087812 ENSMUSP00000085113 TRANSLATION protein_coding - CCDS29627.1 - 315.0 0.0 1.0 10.9 181.2 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024667 Tmem216 ENSMUST00000025569 ENSMUSP00000025569 TRANSLATION protein_coding - CCDS37913.1 1 87.0 0.0 1.5 9.2 75.5 2.0 -3,-5 0.3919 - 8.926 MINOR ENSMUSG00000024667 Tmem216 ENSMUST00000154383 ENSMUSP00000115319 TRANSLATION protein_coding - CCDS70934.1 3 141.0 0.0 3.0 15.9 113.4 4.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024667 Tmem216 ENSMUST00000236561 ENSMUSP00000158207 TRANSLATION nonsense_mediated_decay - CCDS37913.1 - 87.0 0.0 1.5 9.2 75.5 2.0 -3,-5 0.3919 - -2.0 MINOR ENSMUSG00000024667 Tmem216 ENSMUST00000131205 - NO_TRANSLATION retained_intron ENSMUSG00000024667 Tmem216 ENSMUST00000145210 ENSMUSP00000123397 TRANSLATION nonsense_mediated_decay - CCDS37913.1 1 87.0 0.0 1.5 9.2 75.5 2.0 -3,-5 0.3919 - -2.0 MINOR ENSMUSG00000024667 Tmem216 ENSMUST00000123788 ENSMUSP00000119596 TRANSLATION nonsense_mediated_decay - CCDS70934.1 3 141.0 0.0 3.0 15.9 113.4 4.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000024667 Tmem216 ENSMUST00000059582 ENSMUSP00000059878 TRANSLATION protein_coding - CCDS37913.1 1 87.0 0.0 1.5 9.2 75.5 2.0 -3,-5 0.3919 - 8.926 MINOR ENSMUSG00000024667 Tmem216 ENSMUST00000237507 - NO_TRANSLATION retained_intron ENSMUSG00000049134 Nrap ENSMUST00000169099 ENSMUSP00000125889 TRANSLATION nonsense_mediated_decay start - 5 387.0 0.0 0.0 0.0 185.2 0.0 -4,-5 0.0008 9 -2.0 MINOR ENSMUSG00000049134 Nrap ENSMUST00000167239 ENSMUSP00000128196 TRANSLATION protein_coding - - 5 1485.0 7.0 1.75 0.0 358.0 0.0 -4,-5 0.1248 49 15.084 MINOR ENSMUSG00000049134 Nrap ENSMUST00000166203 ENSMUSP00000132582 TRANSLATION protein_coding - - 5 1692.0 7.0 1.75 1.1 372.2 0.0 -4,-5 0.2105 57 15.978 MINOR ENSMUSG00000049134 Nrap ENSMUST00000040711 ENSMUSP00000048364 TRANSLATION protein_coding - CCDS29914.1 1 1693.0 7.0 1.75 7.6 383.6 0.0 -4,-5 0.7998 58 19.332 MINOR ENSMUSG00000049134 Nrap ENSMUST00000095947 ENSMUSP00000093640 TRANSLATION protein_coding - - 5 1611.0 0.0 0.0 0.0 349.0 0.0 -4,-5 0.0786 56 2.544 MINOR ENSMUSG00000049134 Nrap ENSMUST00000073536 ENSMUSP00000073228 TRANSLATION protein_coding - CCDS29913.1 1 1728.0 7.0 1.75 8.3 406.6 0.0 -4,-5 1.0 58 21.0 PRINCIPAL:1 ENSMUSG00000079344 Lipo4 ENSMUST00000143522 ENSMUSP00000121321 TRANSLATION protein_coding - - 5 398.0 7.0 7.9 1.1 101.3 0.0 1,-3 0.8349 - 19.0 PRINCIPAL:1 ENSMUSG00000061387 Or10w1 ENSMUST00000213900 ENSMUSP00000151186 TRANSLATION protein_coding - - 5 321.0 0.0 1.0 0.0 162.3 7.0 -4,-7 0.1462 - 12.0 MINOR ENSMUSG00000061387 Or10w1 ENSMUST00000080162 ENSMUSP00000079057 TRANSLATION protein_coding - CCDS29668.1 - 316.0 0.0 1.0 4.7 162.3 7.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061387 Or10w1 ENSMUST00000216631 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047298 Kcnv2 ENSMUST00000056708 ENSMUSP00000055091 TRANSLATION protein_coding - CCDS29722.1 1 562.0 0.0 0.66 5.6 201.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035049 Rrp12 ENSMUST00000038677 ENSMUSP00000039853 TRANSLATION protein_coding - CCDS29814.1 1 1295.0 0.0 0.0 9.9 247.5 0.0 -4,-7 1.0 23 9.0 PRINCIPAL:1 ENSMUSG00000037451 Slc22a20 ENSMUST00000041827 ENSMUSP00000049473 TRANSLATION protein_coding - CCDS29486.1 1 556.0 0.0 5.45 8.0 89.8 0.0 -1,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000037451 Slc22a20 ENSMUST00000237046 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025013 Tll2 ENSMUST00000025986 ENSMUSP00000025986 TRANSLATION protein_coding - CCDS37986.1 1 1012.0 32.0 17.8 1.8 909.9 0.0 3,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000025013 Tll2 ENSMUST00000169941 ENSMUSP00000125973 TRANSLATION protein_coding - - 1 995.0 32.0 16.95 0.0 869.1 0.0 3,-2 0.229 - 13.854 MINOR ENSMUSG00000025016 Tm9sf3 ENSMUST00000025989 ENSMUSP00000025989 TRANSLATION protein_coding - - 1 584.0 0.0 0.0 0.0 531.8 10.0 3,-1 0.2417 13 6.0 MINOR ENSMUSG00000025016 Tm9sf3 ENSMUST00000237871 ENSMUSP00000158318 TRANSLATION protein_coding - CCDS29808.1 - 587.0 0.0 0.0 6.6 531.8 10.0 3,-1 1.0 13 8.0 PRINCIPAL:1 ENSMUSG00000024790 Sac3d1 ENSMUST00000113533 ENSMUSP00000109161 TRANSLATION protein_coding - CCDS37896.1 1 427.0 0.0 0.72 0.0 259.0 0.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000050195 Scd4 ENSMUST00000133314 - NO_TRANSLATION retained_intron ENSMUSG00000050195 Scd4 ENSMUST00000058856 ENSMUSP00000059860 TRANSLATION protein_coding - CCDS29849.1 1 353.0 0.0 5.0 12.2 55.9 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044345 Marveld1 ENSMUST00000184186 ENSMUSP00000139254 TRANSLATION protein_coding start - - 154.0 0.0 1.0 0.0 63.4 5.0 -3,-6 0.0733 2 -2.0 MINOR ENSMUSG00000044345 Marveld1 ENSMUST00000061111 ENSMUSP00000053733 TRANSLATION protein_coding - CCDS50439.1 1 173.0 0.0 1.0 2.6 63.4 5.0 -4,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000057240 Ms4a13 ENSMUST00000188464 ENSMUSP00000140293 TRANSLATION protein_coding - CCDS84420.1 1 174.0 0.0 3.74 2.5 31.1 4.0 -3,-5 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000057240 Ms4a13 ENSMUST00000073380 ENSMUSP00000073095 TRANSLATION protein_coding - CCDS29595.1 1 203.0 0.0 3.74 0.0 31.1 4.0 -3,-5 0.1822 - 6.0 ALTERNATIVE:2 ENSMUSG00000036372 Tmem258 ENSMUST00000166412 ENSMUSP00000128883 TRANSLATION protein_coding - CCDS50386.1 1 74.0 0.0 2.0 2.7 112.1 3.0 -3,-5 0.3398 - 12.22 MINOR ENSMUSG00000036372 Tmem258 ENSMUST00000153854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036372 Tmem258 ENSMUST00000127878 - NO_TRANSLATION retained_intron ENSMUSG00000036372 Tmem258 ENSMUST00000040372 ENSMUSP00000044751 TRANSLATION protein_coding - CCDS50385.1 1 79.0 0.0 2.0 31.9 112.1 3.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000040065 Pfpl ENSMUST00000168148 ENSMUSP00000126346 TRANSLATION protein_coding - CCDS50397.1 1 702.0 0.0 1.0 0.0 97.9 0.0 1,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000117924 Tmem223 ENSMUST00000010248 ENSMUSP00000010248 TRANSLATION protein_coding - CCDS29544.1 1 199.0 0.0 0.96 1.8 203.2 0.0 -4,0 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000045883 Or5b107 ENSMUST00000208489 ENSMUSP00000146723 TRANSLATION protein_coding stop - 3 129.0 0.0 1.0 0.0 77.7 2.0 -4,-5 0.0015 - -2.0 MINOR ENSMUSG00000045883 Or5b107 ENSMUST00000053772 ENSMUSP00000053269 TRANSLATION protein_coding - CCDS29652.1 - 312.0 0.0 2.0 10.5 185.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045883 Or5b107 ENSMUST00000207113 ENSMUSP00000146358 TRANSLATION protein_coding - CCDS29652.1 2 312.0 0.0 2.0 10.5 185.1 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000117789 Gm50388 ENSMUST00000236560 ENSMUSP00000158273 TRANSLATION nonsense_mediated_decay,RT - CCDS29446.1 - 415.0 0.0 0.7 11.0 344.3 0.0 1,-3 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000024678 Ms4a4d ENSMUST00000025581 ENSMUSP00000025581 TRANSLATION protein_coding - CCDS29602.1 1 225.0 0.0 4.1 0.3 57.7 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042041 2010003K11Rik ENSMUST00000048482 ENSMUSP00000036729 TRANSLATION protein_coding - CCDS29429.1 1 124.0 0.0 0.0 5.6 172.7 0.0 -4,-2 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000016495 Plgrkt ENSMUST00000139860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016495 Plgrkt ENSMUST00000129608 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016495 Plgrkt ENSMUST00000141838 - NO_TRANSLATION retained_intron ENSMUSG00000016495 Plgrkt ENSMUST00000155367 ENSMUSP00000118861 TRANSLATION protein_coding stop - 3 74.0 0.0 1.75 0.0 89.1 1.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000016495 Plgrkt ENSMUST00000143467 ENSMUSP00000120466 TRANSLATION protein_coding - CCDS29734.1 1 147.0 0.0 4.0 0.0 190.5 2.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000016495 Plgrkt ENSMUST00000139176 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016495 Plgrkt ENSMUST00000138051 ENSMUSP00000118559 TRANSLATION protein_coding stop - 3 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000016495 Plgrkt ENSMUST00000016639 ENSMUSP00000016639 TRANSLATION protein_coding - CCDS29734.1 1 147.0 0.0 4.0 0.0 190.5 2.0 -4,-6 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000016495 Plgrkt ENSMUST00000126800 ENSMUSP00000118295 TRANSLATION protein_coding stop - 2 42.0 0.0 1.0 0.0 42.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000016495 Plgrkt ENSMUST00000152936 ENSMUSP00000114754 TRANSLATION protein_coding - - 1 46.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - 0.0 MINOR ENSMUSG00000024978 Gpam ENSMUST00000061856 ENSMUSP00000057635 TRANSLATION protein_coding - CCDS29906.1 1 827.0 0.0 1.83 20.5 75.3 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000024978 Gpam ENSMUST00000237146 ENSMUSP00000158322 TRANSLATION protein_coding - CCDS29906.1 - 827.0 0.0 1.83 20.5 75.3 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000024978 Gpam ENSMUST00000236859 ENSMUSP00000157914 TRANSLATION nonsense_mediated_decay - - - 681.0 0.0 1.83 0.0 75.3 0.0 -4,-5 0.0419 13 -2.0 MINOR ENSMUSG00000024978 Gpam ENSMUST00000236422 ENSMUSP00000158199 TRANSLATION protein_coding stop - - 124.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024978 Gpam ENSMUST00000235957 ENSMUSP00000157722 TRANSLATION protein_coding - CCDS29906.1 - 827.0 0.0 1.83 20.5 75.3 0.0 -4,-5 1.0 16 16.0 PRINCIPAL:1 ENSMUSG00000049303 Syt12 ENSMUST00000059295 ENSMUSP00000055237 TRANSLATION protein_coding - CCDS29428.1 1 421.0 0.0 2.7 13.9 84.3 0.0 -4,-7 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000049303 Syt12 ENSMUST00000128114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049303 Syt12 ENSMUST00000133222 - NO_TRANSLATION retained_intron ENSMUSG00000049303 Syt12 ENSMUST00000166191 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024791 Cdca5 ENSMUST00000156961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024791 Cdca5 ENSMUST00000025704 ENSMUSP00000025704 TRANSLATION protein_coding - CCDS29493.1 1 264.0 0.0 0.75 0.0 88.7 0.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000024791 Cdca5 ENSMUST00000152528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025198 Erlin1 ENSMUST00000112028 ENSMUSP00000107659 TRANSLATION protein_coding - CCDS29842.2 1 348.0 0.0 9.51 12.1 74.6 0.0 0,-4 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000025198 Erlin1 ENSMUST00000171952 ENSMUSP00000127971 TRANSLATION nonsense_mediated_decay - - 5 69.0 0.0 2.0 0.0 0.0 0.0 0,-4 0.0034 1 -2.0 MINOR ENSMUSG00000025198 Erlin1 ENSMUST00000170801 ENSMUSP00000129684 TRANSLATION protein_coding - CCDS29842.2 1 348.0 0.0 9.51 12.1 74.6 0.0 0,-4 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000025198 Erlin1 ENSMUST00000071698 ENSMUSP00000071618 TRANSLATION protein_coding - CCDS29842.2 5 348.0 0.0 9.51 12.1 74.6 0.0 0,-4 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000025198 Erlin1 ENSMUST00000172041 ENSMUSP00000131012 TRANSLATION protein_coding stop - 3 158.0 0.0 5.08 0.0 53.8 0.0 0,-4 0.0025 3 -2.0 MINOR ENSMUSG00000025198 Erlin1 ENSMUST00000170577 - NO_TRANSLATION retained_intron ENSMUSG00000025198 Erlin1 ENSMUST00000169092 ENSMUSP00000131740 TRANSLATION protein_coding stop - 3 23.0 0.0 0.75 0.0 0.0 0.0 -2,-5 0.0 - -2.0 MINOR ENSMUSG00000025198 Erlin1 ENSMUST00000172262 ENSMUSP00000126271 TRANSLATION protein_coding start/stop - 5 59.0 0.0 1.0 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025198 Erlin1 ENSMUST00000168602 - NO_TRANSLATION retained_intron ENSMUSG00000040913 Fbxw4 ENSMUST00000162433 ENSMUSP00000124998 TRANSLATION protein_coding - - 3 113.0 0.0 3.08 0.0 14.2 0.0 -4,-5 0.0 - 1.008 MINOR ENSMUSG00000040913 Fbxw4 ENSMUST00000160718 ENSMUSP00000157690 TRANSLATION protein_coding - - 2 113.0 0.0 3.08 0.0 14.2 0.0 -4,-5 0.0 - 1.008 MINOR ENSMUSG00000040913 Fbxw4 ENSMUST00000160003 ENSMUSP00000124604 TRANSLATION protein_coding - - 3 83.0 0.0 2.33 0.0 14.2 0.0 -4,-5 0.0 - 1.008 MINOR ENSMUSG00000040913 Fbxw4 ENSMUST00000159590 ENSMUSP00000124084 TRANSLATION protein_coding stop - 3 166.0 0.0 3.75 0.0 32.8 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000040913 Fbxw4 ENSMUST00000162879 ENSMUSP00000124675 TRANSLATION protein_coding stop - 2 102.0 0.0 2.75 0.0 14.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040913 Fbxw4 ENSMUST00000161556 - NO_TRANSLATION retained_intron ENSMUSG00000040913 Fbxw4 ENSMUST00000161039 - NO_TRANSLATION retained_intron ENSMUSG00000040913 Fbxw4 ENSMUST00000160438 ENSMUSP00000125136 TRANSLATION protein_coding stop - 5 78.0 0.0 2.0 0.0 14.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040913 Fbxw4 ENSMUST00000160018 ENSMUSP00000125641 TRANSLATION protein_coding - - 3 59.0 0.0 0.9 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000040913 Fbxw4 ENSMUST00000046869 ENSMUSP00000036505 TRANSLATION protein_coding - CCDS29863.1 1 410.0 0.0 9.33 0.0 84.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000056290 Ms4a4b ENSMUST00000144135 ENSMUSP00000158171 TRANSLATION nonsense_mediated_decay start - 5 64.0 0.0 1.0 0.0 0.0 0.0 2,-3 0.0026 - -2.0 MINOR ENSMUSG00000056290 Ms4a4b ENSMUST00000142135 - NO_TRANSLATION retained_intron ENSMUSG00000056290 Ms4a4b ENSMUST00000136366 - NO_TRANSLATION retained_intron ENSMUSG00000056290 Ms4a4b ENSMUST00000035258 ENSMUSP00000046909 TRANSLATION protein_coding - CCDS29600.1 1 226.0 0.0 4.1 0.4 63.7 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000056290 Ms4a4b ENSMUST00000152242 - NO_TRANSLATION retained_intron ENSMUSG00000056290 Ms4a4b ENSMUST00000123758 - NO_TRANSLATION retained_intron ENSMUSG00000056290 Ms4a4b ENSMUST00000145160 - NO_TRANSLATION retained_intron ENSMUSG00000024754 Cemip2 ENSMUST00000096194 ENSMUSP00000093908 TRANSLATION protein_coding - CCDS37934.1 5 1383.0 0.0 22.25 22.0 212.1 1.0 -4,-2 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000024754 Cemip2 ENSMUST00000237802 ENSMUSP00000158262 TRANSLATION protein_coding stop - - 194.0 0.0 2.0 0.0 40.2 1.0 -4,-2 0.0 3 -2.0 MINOR ENSMUSG00000024754 Cemip2 ENSMUST00000025663 ENSMUSP00000025663 TRANSLATION protein_coding - CCDS37934.1 1 1383.0 0.0 22.25 22.0 212.1 1.0 -4,-2 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000024754 Cemip2 ENSMUST00000238079 - NO_TRANSLATION retained_intron ENSMUSG00000024754 Cemip2 ENSMUST00000236506 - NO_TRANSLATION retained_intron ENSMUSG00000025220 Oga ENSMUST00000235508 ENSMUSP00000157443 TRANSLATION protein_coding - - - 182.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.003 4 0.0 MINOR ENSMUSG00000025220 Oga ENSMUST00000236960 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025220 Oga ENSMUST00000235448 ENSMUSP00000157944 TRANSLATION protein_coding stop - - 84.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0041 1 -2.0 MINOR ENSMUSG00000025220 Oga ENSMUST00000026243 ENSMUSP00000026243 TRANSLATION protein_coding - CCDS29866.1 1 916.0 0.0 7.2195 11.5 0.0 0.0 -4,-5 1.0 18 9.0 PRINCIPAL:1 ENSMUSG00000025220 Oga ENSMUST00000235865 - NO_TRANSLATION retained_intron ENSMUSG00000025220 Oga ENSMUST00000235936 - NO_TRANSLATION retained_intron ENSMUSG00000071645 Tut1 ENSMUST00000237611 - NO_TRANSLATION retained_intron ENSMUSG00000071645 Tut1 ENSMUST00000096239 ENSMUSP00000093958 TRANSLATION protein_coding - CCDS29562.1 2 869.0 16.0 6.1 0.8 74.6 0.0 -4,-6 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000071645 Tut1 ENSMUST00000236564 - NO_TRANSLATION retained_intron ENSMUSG00000045098 Kmt5b ENSMUST00000113974 ENSMUSP00000109607 TRANSLATION protein_coding - CCDS29399.1 5 860.0 34.0 7.07 7.9 46.7 0.0 -4,-5 0.976 4 13.292 ALTERNATIVE:1 ENSMUSG00000045098 Kmt5b ENSMUST00000176926 ENSMUSP00000135756 TRANSLATION protein_coding - - 5 423.0 35.0 7.09 0.0 46.7 0.0 -4,-5 0.0458 2 12.0 MINOR ENSMUSG00000045098 Kmt5b ENSMUST00000176262 ENSMUSP00000135563 TRANSLATION protein_coding - CCDS29399.1 5 860.0 34.0 7.07 7.9 46.7 0.0 -4,-5 0.976 4 13.292 ALTERNATIVE:1 ENSMUSG00000045098 Kmt5b ENSMUST00000176125 - NO_TRANSLATION retained_intron ENSMUSG00000045098 Kmt5b ENSMUST00000113970 ENSMUSP00000109603 TRANSLATION protein_coding - CCDS50344.1 1 394.0 35.0 7.09 3.2 46.9 0.0 -4,-5 0.3916 2 12.638 MINOR ENSMUSG00000045098 Kmt5b ENSMUST00000236861 - NO_TRANSLATION retained_intron ENSMUSG00000045098 Kmt5b ENSMUST00000155618 - NO_TRANSLATION retained_intron ENSMUSG00000045098 Kmt5b ENSMUST00000005518 ENSMUSP00000005518 TRANSLATION protein_coding - CCDS50345.1 5 327.0 35.0 7.09 1.1 47.1 0.0 -4,-5 0.3111 2 12.028 MINOR ENSMUSG00000045098 Kmt5b ENSMUST00000113972 ENSMUSP00000109605 TRANSLATION protein_coding - CCDS50343.1 5 883.0 35.0 7.09 7.2 46.7 0.0 -4,-5 1.0 5 13.798 PRINCIPAL:3 ENSMUSG00000045098 Kmt5b ENSMUST00000176512 ENSMUSP00000135004 TRANSLATION protein_coding stop - 3 93.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045098 Kmt5b ENSMUST00000176407 ENSMUSP00000134897 TRANSLATION protein_coding stop - 3 87.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045098 Kmt5b ENSMUST00000152935 ENSMUSP00000115984 TRANSLATION protein_coding stop - 3 212.0 16.0 5.01 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000045098 Kmt5b ENSMUST00000236012 - NO_TRANSLATION retained_intron ENSMUSG00000045098 Kmt5b ENSMUST00000135586 - NO_TRANSLATION retained_intron ENSMUSG00000045098 Kmt5b ENSMUST00000113977 ENSMUSP00000109610 TRANSLATION protein_coding - CCDS29399.1 5 860.0 34.0 7.07 7.9 46.7 0.0 -4,-5 0.976 4 13.292 ALTERNATIVE:1 ENSMUSG00000045098 Kmt5b ENSMUST00000113968 ENSMUSP00000109601 TRANSLATION protein_coding - CCDS50345.1 1 327.0 35.0 7.09 1.1 47.1 0.0 -4,-5 0.3111 2 12.028 MINOR ENSMUSG00000045098 Kmt5b ENSMUST00000237440 ENSMUSP00000158061 TRANSLATION protein_coding - CCDS50345.1 - 327.0 35.0 7.09 1.1 47.1 0.0 -4,-5 0.3111 2 12.028 MINOR ENSMUSG00000045098 Kmt5b ENSMUST00000177355 ENSMUSP00000135590 TRANSLATION protein_coding stop - 5 110.0 2.0 1.726 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000045098 Kmt5b ENSMUST00000235768 ENSMUSP00000157479 TRANSLATION nonsense_mediated_decay start - - 85.0 9.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000045098 Kmt5b ENSMUST00000113973 ENSMUSP00000109606 TRANSLATION protein_coding - CCDS50343.1 5 883.0 35.0 7.09 7.2 46.7 0.0 -4,-5 1.0 5 13.798 PRINCIPAL:3 ENSMUSG00000045098 Kmt5b ENSMUST00000052699 ENSMUSP00000060162 TRANSLATION protein_coding - CCDS50344.1 5 394.0 35.0 7.09 3.2 46.9 0.0 -4,-5 0.3916 2 12.638 MINOR ENSMUSG00000025027 Xpnpep1 ENSMUST00000238001 - NO_TRANSLATION retained_intron ENSMUSG00000025027 Xpnpep1 ENSMUST00000182097 ENSMUSP00000138473 TRANSLATION protein_coding stop - 3 119.0 0.0 3.58 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000025027 Xpnpep1 ENSMUST00000182728 - NO_TRANSLATION retained_intron ENSMUSG00000025027 Xpnpep1 ENSMUST00000182534 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025027 Xpnpep1 ENSMUST00000182939 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025027 Xpnpep1 ENSMUST00000182500 ENSMUSP00000138097 TRANSLATION nonsense_mediated_decay - - 1 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000025027 Xpnpep1 ENSMUST00000236058 ENSMUSP00000157689 TRANSLATION protein_coding - - - 623.0 11.0 16.66 32.1 405.9 0.0 -4,-7 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000025027 Xpnpep1 ENSMUST00000235453 - NO_TRANSLATION retained_intron ENSMUSG00000025027 Xpnpep1 ENSMUST00000182877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025027 Xpnpep1 ENSMUST00000182844 - NO_TRANSLATION retained_intron ENSMUSG00000025027 Xpnpep1 ENSMUST00000236456 ENSMUSP00000157484 TRANSLATION nonsense_mediated_decay - - - 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000025027 Xpnpep1 ENSMUST00000236008 ENSMUSP00000158501 TRANSLATION protein_coding - - - 587.0 11.0 15.66 0.0 355.5 0.0 -4,-7 0.0152 19 12.978 MINOR ENSMUSG00000025027 Xpnpep1 ENSMUST00000182887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025027 Xpnpep1 ENSMUST00000183274 ENSMUSP00000138233 TRANSLATION protein_coding - - 1 635.0 11.0 15.726 0.0 355.5 0.0 -4,-1 0.0422 20 13.11 MINOR ENSMUSG00000025027 Xpnpep1 ENSMUST00000237294 ENSMUSP00000158390 TRANSLATION protein_coding - - - 623.0 11.0 16.66 32.1 405.9 0.0 -4,-7 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000025027 Xpnpep1 ENSMUST00000183188 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025027 Xpnpep1 ENSMUST00000183108 ENSMUSP00000138250 TRANSLATION protein_coding - CCDS29899.2 1 666.0 11.0 16.66 9.2 405.9 0.0 -4,-1 0.5323 23 19.056 MINOR ENSMUSG00000036908 Unc93b1 ENSMUST00000236920 ENSMUSP00000157793 TRANSLATION protein_coding start/stop - - 138.0 0.0 2.5 0.0 0.0 4.0 -4,-5 0.0027 3 -2.0 MINOR ENSMUSG00000036908 Unc93b1 ENSMUST00000161415 - NO_TRANSLATION retained_intron ENSMUSG00000036908 Unc93b1 ENSMUST00000237030 ENSMUSP00000158499 TRANSLATION protein_coding start/stop - - 262.0 0.0 5.25 0.0 0.0 11.0 -1,-4 0.0043 3 -2.0 MINOR ENSMUSG00000036908 Unc93b1 ENSMUST00000237112 - NO_TRANSLATION retained_intron ENSMUSG00000036908 Unc93b1 ENSMUST00000162708 ENSMUSP00000124272 TRANSLATION protein_coding - - 1 598.0 0.0 10.18 8.1 26.0 21.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000036908 Unc93b1 ENSMUST00000162193 - NO_TRANSLATION retained_intron ENSMUSG00000036908 Unc93b1 ENSMUST00000165711 ENSMUSP00000128751 TRANSLATION protein_coding - - 5 401.0 0.0 7.58 0.7 26.0 16.0 -4,-5 0.1446 5 6.798 MINOR ENSMUSG00000075296 Aldh3b2 ENSMUST00000143380 ENSMUSP00000115356 TRANSLATION protein_coding - CCDS50347.1 1 479.0 30.0 8.9 0.3 288.4 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000039699 Batf2 ENSMUST00000237511 ENSMUSP00000158113 TRANSLATION protein_coding - - - 276.0 0.0 1.2 5.4 36.8 0.0 -4,-5 0.5804 3 10.0 ALTERNATIVE:1 ENSMUSG00000039699 Batf2 ENSMUST00000132750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039699 Batf2 ENSMUST00000134150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039699 Batf2 ENSMUST00000141858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039699 Batf2 ENSMUST00000139326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039699 Batf2 ENSMUST00000045042 ENSMUSP00000045744 TRANSLATION protein_coding - CCDS29497.1 1 277.0 0.0 1.2 5.4 43.5 0.0 -4,-5 1.0 3 10.0 PRINCIPAL:2 ENSMUSG00000039699 Batf2 ENSMUST00000135461 - NO_TRANSLATION retained_intron ENSMUSG00000024883 Rin1 ENSMUST00000224254 - NO_TRANSLATION retained_intron ENSMUSG00000024883 Rin1 ENSMUST00000238025 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024883 Rin1 ENSMUST00000237816 - NO_TRANSLATION retained_intron ENSMUSG00000024883 Rin1 ENSMUST00000224178 ENSMUSP00000153351 TRANSLATION protein_coding stop - - 37.0 0.0 0.58 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024883 Rin1 ENSMUST00000224363 - NO_TRANSLATION retained_intron ENSMUSG00000024883 Rin1 ENSMUST00000225799 ENSMUSP00000153574 TRANSLATION protein_coding stop - - 60.0 0.0 0.25 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024883 Rin1 ENSMUST00000236248 - NO_TRANSLATION retained_intron ENSMUSG00000024883 Rin1 ENSMUST00000025818 ENSMUSP00000025818 TRANSLATION protein_coding - - 1 774.0 0.0 3.18 0.0 86.3 0.0 -4,-5 0.7996 18 8.0 PRINCIPAL:2 ENSMUSG00000024883 Rin1 ENSMUST00000225427 ENSMUSP00000153189 TRANSLATION protein_coding - CCDS29447.1 - 763.0 0.0 2.85 0.0 86.3 0.0 -4,-5 0.422 18 7.34 ALTERNATIVE:2 ENSMUSG00000024883 Rin1 ENSMUST00000225203 - NO_TRANSLATION retained_intron ENSMUSG00000024883 Rin1 ENSMUST00000224032 ENSMUSP00000153118 TRANSLATION protein_coding start/stop - - 193.0 0.0 1.3 0.0 86.3 0.0 -4,-6 0.0254 2 -2.0 MINOR ENSMUSG00000024883 Rin1 ENSMUST00000237762 ENSMUSP00000157927 TRANSLATION nonsense_mediated_decay - - - 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024883 Rin1 ENSMUST00000224288 ENSMUSP00000153481 TRANSLATION nonsense_mediated_decay - - - 39.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025003 Cyp2c39 ENSMUST00000025968 ENSMUSP00000025968 TRANSLATION protein_coding - CCDS29795.1 1 490.0 33.0 9.0 8.8 541.1 0.0 3,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000004231 Pax2 ENSMUST00000004340 ENSMUSP00000004340 TRANSLATION protein_coding - - 5 416.0 0.0 2.48 2.1 431.9 0.0 -4,-5 0.1912 1 12.086 MINOR ENSMUSG00000004231 Pax2 ENSMUST00000173346 ENSMUSP00000134311 TRANSLATION protein_coding stop - 5 303.0 0.0 2.48 0.0 250.1 0.0 2,-2 0.0384 1 -2.0 MINOR ENSMUSG00000004231 Pax2 ENSMUST00000174490 ENSMUSP00000134661 TRANSLATION protein_coding - CCDS37998.2 1 394.0 0.0 2.48 23.0 433.8 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000033760 Rbm4b ENSMUST00000236797 ENSMUSP00000157577 TRANSLATION nonsense_mediated_decay - - - 154.0 0.0 1.33 0.0 118.7 0.0 -4,-5 0.025 - -2.0 MINOR ENSMUSG00000033760 Rbm4b ENSMUST00000182200 ENSMUSP00000138146 TRANSLATION nonsense_mediated_decay - - 1 152.0 0.0 1.2 2.2 118.5 0.0 -4,-5 0.0638 - -2.0 MINOR ENSMUSG00000033760 Rbm4b ENSMUST00000036744 ENSMUSP00000038256 TRANSLATION protein_coding - CCDS29435.1 1 357.0 0.0 1.0 12.5 151.1 0.0 -4,-5 1.0 1 13.512 PRINCIPAL:1 ENSMUSG00000033760 Rbm4b ENSMUST00000182065 - NO_TRANSLATION retained_intron ENSMUSG00000033760 Rbm4b ENSMUST00000183008 - NO_TRANSLATION retained_intron ENSMUSG00000033760 Rbm4b ENSMUST00000235278 ENSMUSP00000157500 TRANSLATION nonsense_mediated_decay - CCDS29435.1 - 357.0 0.0 1.0 12.5 151.1 0.0 -4,-5 1.0 1 -2.0 MINOR ENSMUSG00000033760 Rbm4b ENSMUST00000236160 ENSMUSP00000158126 TRANSLATION nonsense_mediated_decay - - - 142.0 0.0 1.0 1.4 116.6 0.0 -4,-5 0.0154 - -2.0 MINOR ENSMUSG00000033760 Rbm4b ENSMUST00000182821 ENSMUSP00000157674 TRANSLATION protein_coding - CCDS29435.1 1 357.0 0.0 1.0 12.5 151.1 0.0 -4,-5 1.0 1 13.512 PRINCIPAL:1 ENSMUSG00000033760 Rbm4b ENSMUST00000237921 ENSMUSP00000157783 TRANSLATION protein_coding stop - - 285.0 0.0 1.0 0.0 151.1 0.0 -4,-5 0.0184 1 -2.0 MINOR ENSMUSG00000033760 Rbm4b ENSMUST00000183332 - NO_TRANSLATION retained_intron ENSMUSG00000096740 Lbhd1 ENSMUST00000187504 ENSMUSP00000139692 TRANSLATION protein_coding,RT - CCDS79682.1 3 259.0 0.0 0.0 1.3 141.7 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000096740 Lbhd1 ENSMUST00000190530 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096740 Lbhd1 ENSMUST00000189165 - NO_TRANSLATION retained_intron ENSMUSG00000034371 Tkfc ENSMUST00000236950 ENSMUSP00000158068 TRANSLATION protein_coding - CCDS37914.1 - 578.0 28.0 7.59 10.7 534.4 0.0 -4,-5 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000034371 Tkfc ENSMUST00000235285 ENSMUSP00000157881 TRANSLATION nonsense_mediated_decay - - - 182.0 8.0 3.1 0.0 209.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000034371 Tkfc ENSMUST00000037678 ENSMUSP00000044556 TRANSLATION protein_coding - CCDS37914.1 1 578.0 28.0 7.59 10.7 534.4 0.0 -4,-5 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000034371 Tkfc ENSMUST00000237788 ENSMUSP00000158115 TRANSLATION protein_coding - - - 527.0 22.0 6.99 0.0 479.7 0.0 -4,-5 0.0056 18 9.516 MINOR ENSMUSG00000034371 Tkfc ENSMUST00000236121 ENSMUSP00000158478 TRANSLATION nonsense_mediated_decay - - - 182.0 8.0 3.1 0.0 209.1 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000034371 Tkfc ENSMUST00000236607 ENSMUSP00000157520 TRANSLATION protein_coding - CCDS37914.1 - 578.0 28.0 7.59 10.7 534.4 0.0 -4,-5 1.0 19 21.0 PRINCIPAL:1 ENSMUSG00000034371 Tkfc ENSMUST00000236478 ENSMUSP00000158426 TRANSLATION protein_coding stop - - 162.0 8.0 2.8 0.0 187.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000025157 Zdhhc16 ENSMUST00000026154 ENSMUSP00000026154 TRANSLATION protein_coding - CCDS29817.1 1 361.0 8.0 10.06 16.7 117.5 9.0 -2,1 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000025157 Zdhhc16 ENSMUST00000224258 ENSMUSP00000153672 TRANSLATION protein_coding stop - - 101.0 0.0 1.66 0.0 0.0 3.0 -2,0 0.0021 - -2.0 MINOR ENSMUSG00000025157 Zdhhc16 ENSMUST00000223802 ENSMUSP00000152899 TRANSLATION protein_coding start - - 57.0 0.0 1.08 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000025157 Zdhhc16 ENSMUST00000223624 - NO_TRANSLATION retained_intron ENSMUSG00000025157 Zdhhc16 ENSMUST00000223768 - NO_TRANSLATION retained_intron ENSMUSG00000025157 Zdhhc16 ENSMUST00000225433 - NO_TRANSLATION retained_intron ENSMUSG00000025157 Zdhhc16 ENSMUST00000224562 ENSMUSP00000153627 TRANSLATION protein_coding stop - - 228.0 5.0 6.07 0.0 0.0 6.0 -2,1 0.0024 1 -2.0 MINOR ENSMUSG00000025157 Zdhhc16 ENSMUST00000225968 ENSMUSP00000153513 TRANSLATION nonsense_mediated_decay start - - 167.0 5.0 4.16 0.0 0.0 6.0 -4,0 0.0038 1 -2.0 MINOR ENSMUSG00000025157 Zdhhc16 ENSMUST00000224896 ENSMUSP00000153604 TRANSLATION protein_coding stop - - 77.0 0.0 1.0 0.0 0.0 0.0 -2,1 0.0004 - -2.0 MINOR ENSMUSG00000025157 Zdhhc16 ENSMUST00000224537 ENSMUSP00000152902 TRANSLATION protein_coding start/stop - - 97.0 8.0 3.24 0.0 95.9 2.0 1,-3 0.002 1 -2.0 MINOR ENSMUSG00000025157 Zdhhc16 ENSMUST00000223785 - NO_TRANSLATION retained_intron ENSMUSG00000025229 Pitx3 ENSMUST00000172980 - NO_TRANSLATION retained_intron ENSMUSG00000025229 Pitx3 ENSMUST00000172971 ENSMUSP00000134563 TRANSLATION protein_coding stop - 5 90.0 0.0 1.0 0.0 31.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025229 Pitx3 ENSMUST00000026259 ENSMUSP00000026259 TRANSLATION protein_coding - CCDS29872.1 1 302.0 0.0 1.5 10.6 113.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000074922 Pabir1 ENSMUST00000099556 ENSMUSP00000097152 TRANSLATION protein_coding - CCDS29712.1 - 284.0 0.0 0.2 9.3 0.0 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000034108 Ccs ENSMUST00000235216 - NO_TRANSLATION retained_intron ENSMUSG00000034108 Ccs ENSMUST00000236178 ENSMUSP00000158377 TRANSLATION protein_coding - - - 228.0 9.0 6.674 1.4 133.7 0.0 -4,-6 0.0318 6 8.958 MINOR ENSMUSG00000034108 Ccs ENSMUST00000235425 - NO_TRANSLATION retained_intron ENSMUSG00000034108 Ccs ENSMUST00000236977 - NO_TRANSLATION retained_intron ENSMUSG00000034108 Ccs ENSMUST00000037246 ENSMUSP00000035486 TRANSLATION protein_coding - CCDS29438.1 1 274.0 9.0 8.254 11.1 140.3 0.0 -4,-6 1.0 6 17.0 PRINCIPAL:4 ENSMUSG00000034108 Ccs ENSMUST00000236567 ENSMUSP00000158087 TRANSLATION nonsense_mediated_decay - - - 123.0 2.0 2.7425 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000034108 Ccs ENSMUST00000238136 ENSMUSP00000158019 TRANSLATION nonsense_mediated_decay start - - 86.0 2.0 2.139 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000034108 Ccs ENSMUST00000236451 ENSMUSP00000158490 TRANSLATION protein_coding - - - 267.0 9.0 7.924 10.0 140.3 0.0 -4,-6 0.8159 6 16.013 ALTERNATIVE:1 ENSMUSG00000034108 Ccs ENSMUST00000235245 ENSMUSP00000158065 TRANSLATION protein_coding - - - 228.0 9.0 6.674 1.4 140.3 0.0 -4,-6 0.0913 6 10.958 MINOR ENSMUSG00000047810 Ccdc88b ENSMUST00000113440 ENSMUSP00000109067 TRANSLATION protein_coding - CCDS37900.1 1 1481.0 0.0 0.0 1.1 49.2 0.0 -3,-5 1.0 27 7.0 PRINCIPAL:1 ENSMUSG00000047810 Ccdc88b ENSMUST00000237252 - NO_TRANSLATION retained_intron ENSMUSG00000047810 Ccdc88b ENSMUST00000236028 ENSMUSP00000158268 TRANSLATION protein_coding start - - 1133.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0222 24 -2.0 MINOR ENSMUSG00000047810 Ccdc88b ENSMUST00000238099 ENSMUSP00000157482 TRANSLATION protein_coding start/stop - - 204.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0011 6 -2.0 MINOR ENSMUSG00000024833 Pola2 ENSMUST00000235426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024833 Pola2 ENSMUST00000237136 - NO_TRANSLATION retained_intron ENSMUSG00000024833 Pola2 ENSMUST00000235790 - NO_TRANSLATION retained_intron ENSMUSG00000024833 Pola2 ENSMUST00000165143 ENSMUSP00000128866 TRANSLATION protein_coding - CCDS50362.1 1 566.0 0.0 12.28 0.0 214.3 0.0 -4,-5 0.0673 9 10.398 MINOR ENSMUSG00000024833 Pola2 ENSMUST00000238075 - NO_TRANSLATION retained_intron ENSMUSG00000024833 Pola2 ENSMUST00000236176 - NO_TRANSLATION retained_intron ENSMUSG00000024833 Pola2 ENSMUST00000236089 - NO_TRANSLATION retained_intron ENSMUSG00000024833 Pola2 ENSMUST00000236013 ENSMUSP00000157865 TRANSLATION protein_coding stop - - 70.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024833 Pola2 ENSMUST00000235224 ENSMUSP00000157450 TRANSLATION protein_coding stop - - 178.0 0.0 2.28 0.0 23.6 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024833 Pola2 ENSMUST00000238043 - NO_TRANSLATION retained_intron ENSMUSG00000024833 Pola2 ENSMUST00000237735 - NO_TRANSLATION retained_intron ENSMUSG00000024833 Pola2 ENSMUST00000235535 ENSMUSP00000157566 TRANSLATION protein_coding start - - 417.0 0.0 9.75 0.0 188.8 0.0 -4,-2 0.0028 6 -2.0 MINOR ENSMUSG00000024833 Pola2 ENSMUST00000025752 ENSMUSP00000025752 TRANSLATION protein_coding - CCDS29485.1 1 600.0 0.0 13.08 12.8 214.3 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000096872 Scgb2a2 ENSMUST00000179814 ENSMUSP00000135964 TRANSLATION protein_coding - - 5 96.0 0.0 1.5 1.2 68.5 0.0 3,-2 0.8177 - 13.0 PRINCIPAL:1 ENSMUSG00000025086 Trub1 ENSMUST00000238107 ENSMUSP00000157924 TRANSLATION protein_coding start/stop - - 141.0 1.0 2.05 0.0 48.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025086 Trub1 ENSMUST00000237166 - NO_TRANSLATION retained_intron ENSMUSG00000025086 Trub1 ENSMUST00000026073 ENSMUSP00000026073 TRANSLATION protein_coding - CCDS29926.1 1 338.0 2.0 5.38 0.4 172.7 0.0 -4,-6 1.0 9 14.0 PRINCIPAL:1 ENSMUSG00000025086 Trub1 ENSMUST00000026072 ENSMUSP00000026072 TRANSLATION protein_coding - CCDS29927.1 1 247.0 2.0 4.28 0.0 159.5 0.0 -4,-6 0.0338 7 11.006 MINOR ENSMUSG00000059734 Ndufs8 ENSMUST00000237341 ENSMUSP00000158327 TRANSLATION protein_coding - CCDS29402.1 - 212.0 29.0 4.68 7.9 47.8 0.0 -4,0 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000059734 Ndufs8 ENSMUST00000236801 ENSMUSP00000158541 TRANSLATION protein_coding - CCDS29402.1 - 212.0 29.0 4.68 7.9 47.8 0.0 -4,0 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000059734 Ndufs8 ENSMUST00000235301 ENSMUSP00000158267 TRANSLATION protein_coding stop - - 67.0 4.0 1.75 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000059734 Ndufs8 ENSMUST00000075092 ENSMUSP00000074600 TRANSLATION protein_coding - CCDS29402.1 1 212.0 29.0 4.68 7.9 47.8 0.0 -4,0 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000059734 Ndufs8 ENSMUST00000235847 ENSMUSP00000158029 TRANSLATION protein_coding - CCDS29402.1 - 212.0 29.0 4.68 7.9 47.8 0.0 -4,0 1.0 10 20.0 PRINCIPAL:1 ENSMUSG00000025176 Hoga1 ENSMUST00000081714 ENSMUSP00000080414 TRANSLATION protein_coding - CCDS29820.1 1 321.0 9.0 7.0 15.5 0.0 0.0 -4,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000025176 Hoga1 ENSMUST00000168414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025176 Hoga1 ENSMUST00000167381 - NO_TRANSLATION retained_intron ENSMUSG00000025176 Hoga1 ENSMUST00000172244 ENSMUSP00000126037 TRANSLATION protein_coding - - 5 158.0 2.0 3.0 1.0 0.0 0.0 -4,-2 0.0874 5 1.332 MINOR ENSMUSG00000046650 Or5an6 ENSMUST00000213657 ENSMUSP00000150691 TRANSLATION protein_coding - CCDS29629.1 5 315.0 0.0 1.0 9.6 174.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046650 Or5an6 ENSMUST00000216169 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046650 Or5an6 ENSMUST00000216773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046650 Or5an6 ENSMUST00000054567 ENSMUSP00000054798 TRANSLATION protein_coding - CCDS29629.1 - 315.0 0.0 1.0 9.6 174.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046650 Or5an6 ENSMUST00000216145 ENSMUSP00000150994 TRANSLATION protein_coding - CCDS29629.1 5 315.0 0.0 1.0 9.6 174.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046650 Or5an6 ENSMUST00000214082 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046650 Or5an6 ENSMUST00000213894 ENSMUSP00000150365 TRANSLATION nonsense_mediated_decay - CCDS29629.1 5 315.0 0.0 1.0 9.6 174.9 5.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000046650 Or5an6 ENSMUST00000217062 ENSMUSP00000148978 TRANSLATION protein_coding - CCDS29629.1 2 315.0 0.0 1.0 9.6 174.9 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000032773 Chrm1 ENSMUST00000163785 ENSMUSP00000126103 TRANSLATION protein_coding - CCDS29539.1 1 460.0 0.0 1.6 11.4 274.7 8.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000032773 Chrm1 ENSMUST00000035444 ENSMUSP00000042632 TRANSLATION protein_coding - CCDS29539.1 1 460.0 0.0 1.6 11.4 274.7 8.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000032773 Chrm1 ENSMUST00000177197 ENSMUSP00000135356 TRANSLATION protein_coding stop - 1 74.0 0.0 1.0 0.0 30.9 2.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025178 Pi4k2a ENSMUST00000235932 ENSMUSP00000158574 TRANSLATION protein_coding - CCDS29821.1 - 479.0 0.0 5.675 14.5 224.6 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000025178 Pi4k2a ENSMUST00000238085 - NO_TRANSLATION retained_intron ENSMUSG00000025178 Pi4k2a ENSMUST00000235988 ENSMUSP00000158577 TRANSLATION nonsense_mediated_decay - - - 386.0 0.0 2.925 0.0 179.7 0.0 -4,-5 0.0 11 -2.0 MINOR ENSMUSG00000025178 Pi4k2a ENSMUST00000066778 ENSMUSP00000069284 TRANSLATION protein_coding - CCDS29821.1 1 479.0 0.0 5.675 14.5 224.6 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000063434 Sorcs3 ENSMUST00000235967 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063434 Sorcs3 ENSMUST00000236094 - NO_TRANSLATION retained_intron ENSMUSG00000063434 Sorcs3 ENSMUST00000078880 ENSMUSP00000077919 TRANSLATION protein_coding - CCDS38020.1 1 1219.0 0.0 18.78 7.3 510.7 0.0 0,-4 1.0 17 14.0 PRINCIPAL:1 ENSMUSG00000041731 Pgm5 ENSMUST00000047666 ENSMUSP00000036025 TRANSLATION protein_coding - CCDS29714.1 1 567.0 13.0 10.75 33.9 248.6 0.0 -4,-5 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000041731 Pgm5 ENSMUST00000150339 - NO_TRANSLATION retained_intron ENSMUSG00000041731 Pgm5 ENSMUST00000133692 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041731 Pgm5 ENSMUST00000129127 - NO_TRANSLATION retained_intron ENSMUSG00000025226 Fbxl15 ENSMUST00000177667 ENSMUSP00000137489 TRANSLATION protein_coding - CCDS38007.1 1 300.0 0.0 3.0 3.7 36.3 0.0 -4,-7 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000025226 Fbxl15 ENSMUST00000026256 ENSMUSP00000026256 TRANSLATION protein_coding - CCDS38007.1 1 300.0 0.0 3.0 3.7 36.3 0.0 -4,-7 1.0 9 13.0 PRINCIPAL:1 ENSMUSG00000024665 Fads2 ENSMUST00000235937 ENSMUSP00000158465 TRANSLATION protein_coding start/stop - - 118.0 0.0 2.5 0.0 0.0 0.0 -4,-2 0.0001 - -2.0 MINOR ENSMUSG00000024665 Fads2 ENSMUST00000238023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024665 Fads2 ENSMUST00000025567 ENSMUSP00000025567 TRANSLATION protein_coding - CCDS29571.1 1 444.0 19.0 10.5 14.2 189.7 0.0 -4,-6 1.0 9 22.0 PRINCIPAL:1 ENSMUSG00000024742 Fen1 ENSMUST00000116542 ENSMUSP00000112241 TRANSLATION protein_coding - CCDS29573.1 1 380.0 7.0 1.0 27.2 233.3 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000024742 Fen1 ENSMUST00000156291 ENSMUSP00000117246 TRANSLATION protein_coding - CCDS29573.1 2 380.0 7.0 1.0 27.2 233.3 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000024742 Fen1 ENSMUST00000025651 ENSMUSP00000025651 TRANSLATION protein_coding - CCDS29573.1 1 380.0 7.0 1.0 27.2 233.3 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000024742 Fen1 ENSMUST00000142241 ENSMUSP00000119221 TRANSLATION protein_coding - CCDS29573.1 1 380.0 7.0 1.0 27.2 233.3 0.0 -4,-6 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000024691 Fam111a ENSMUST00000025595 ENSMUSP00000025595 TRANSLATION protein_coding - CCDS29632.1 1 613.0 0.0 0.0 1.8 69.3 0.0 -4,-5 1.0 3 1.0 PRINCIPAL:2 ENSMUSG00000024691 Fam111a ENSMUST00000151307 ENSMUSP00000123598 TRANSLATION protein_coding - CCDS84424.1 5 569.0 0.0 0.0 0.0 69.3 0.0 -4,-6 0.2121 3 0.0 ALTERNATIVE:2 ENSMUSG00000024691 Fam111a ENSMUST00000139270 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024691 Fam111a ENSMUST00000144662 ENSMUSP00000119518 TRANSLATION protein_coding - CCDS29632.1 5 613.0 0.0 0.0 1.8 69.3 0.0 -4,-5 1.0 3 1.0 PRINCIPAL:2 ENSMUSG00000047423 AI837181 ENSMUST00000159759 ENSMUSP00000125651 TRANSLATION protein_coding - CCDS29463.2 1 298.0 0.0 2.0 0.0 0.0 0.0 -4,-6 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000047423 AI837181 ENSMUST00000054477 ENSMUSP00000158508 TRANSLATION protein_coding - - 1 181.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0182 1 0.0 MINOR ENSMUSG00000063777 Or5b3 ENSMUST00000077538 ENSMUSP00000076741 TRANSLATION protein_coding - CCDS29658.1 - 309.0 0.0 1.0 8.2 160.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000063777 Or5b3 ENSMUST00000216910 ENSMUSP00000150006 TRANSLATION protein_coding - CCDS29658.1 5 309.0 0.0 1.0 8.2 160.3 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000072437 Nanos1 ENSMUST00000088237 ENSMUSP00000096874 TRANSLATION protein_coding - CCDS29941.1 - 267.0 8.0 0.4 0.1 89.0 0.0 -2,2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000024696 Lpxn ENSMUST00000025601 ENSMUSP00000025601 TRANSLATION protein_coding - CCDS29638.1 1 386.0 27.0 4.15 1.6 223.3 0.0 -4,-5 1.0 7 15.0 PRINCIPAL:2 ENSMUSG00000024696 Lpxn ENSMUST00000235690 ENSMUSP00000157548 TRANSLATION protein_coding - - - 290.0 27.0 4.15 0.4 223.3 0.0 -4,-6 0.2983 4 14.0 ALTERNATIVE:2 ENSMUSG00000024680 Ms4a2 ENSMUST00000164792 ENSMUSP00000127373 TRANSLATION protein_coding - CCDS29604.1 1 235.0 0.0 2.8 0.4 112.3 5.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024680 Ms4a2 ENSMUST00000186978 ENSMUSP00000140628 TRANSLATION protein_coding - CCDS79695.1 1 125.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0224 - 2.142 MINOR ENSMUSG00000024680 Ms4a2 ENSMUST00000186413 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024680 Ms4a2 ENSMUST00000025583 ENSMUSP00000025583 TRANSLATION protein_coding - CCDS70936.1 1 198.0 0.0 2.0 0.0 66.2 4.0 -4,-6 0.0213 - 7.518 MINOR ENSMUSG00000024680 Ms4a2 ENSMUST00000189641 ENSMUSP00000139841 TRANSLATION protein_coding - CCDS79694.1 3 202.0 0.0 1.86 0.0 66.2 4.0 -4,-6 0.0272 - 7.218 MINOR ENSMUSG00000024826 Dpf2 ENSMUST00000118623 ENSMUSP00000113465 TRANSLATION protein_coding - CCDS70920.1 5 405.0 20.0 6.95 18.6 166.2 0.0 -4,-5 0.9333 9 19.666 MINOR ENSMUSG00000024826 Dpf2 ENSMUST00000155937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024826 Dpf2 ENSMUST00000137465 - NO_TRANSLATION retained_intron ENSMUSG00000024826 Dpf2 ENSMUST00000123029 - NO_TRANSLATION retained_intron ENSMUSG00000024826 Dpf2 ENSMUST00000136983 ENSMUSP00000120125 TRANSLATION protein_coding - CCDS37892.1 1 391.0 22.0 7.45 17.8 166.2 0.0 -4,-5 1.0 9 21.82 PRINCIPAL:1 ENSMUSG00000024826 Dpf2 ENSMUST00000236970 ENSMUSP00000158488 TRANSLATION protein_coding start - - 349.0 22.0 6.45 0.0 109.4 0.0 -4,-5 0.0006 7 -2.0 MINOR ENSMUSG00000024826 Dpf2 ENSMUST00000154365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024826 Dpf2 ENSMUST00000129816 - NO_TRANSLATION retained_intron ENSMUSG00000024826 Dpf2 ENSMUST00000025746 ENSMUSP00000025746 TRANSLATION nonsense_mediated_decay start - 1 214.0 4.0 2.95 0.0 59.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000024826 Dpf2 ENSMUST00000142995 - NO_TRANSLATION retained_intron ENSMUSG00000044441 Or5b94 ENSMUST00000207341 ENSMUSP00000147051 TRANSLATION protein_coding - CCDS29634.1 3 312.0 0.0 1.0 12.5 165.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044441 Or5b94 ENSMUST00000208494 ENSMUSP00000146803 TRANSLATION protein_coding - CCDS29634.1 3 312.0 0.0 1.0 12.5 165.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044441 Or5b94 ENSMUST00000057924 ENSMUSP00000050632 TRANSLATION protein_coding - CCDS29634.1 - 312.0 0.0 1.0 12.5 165.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044441 Or5b94 ENSMUST00000208657 ENSMUSP00000146650 TRANSLATION protein_coding - CCDS29634.1 3 312.0 0.0 1.0 12.5 165.0 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050370 Ch25h ENSMUST00000050562 ENSMUSP00000049683 TRANSLATION protein_coding - CCDS29759.1 - 298.0 0.0 1.0 0.0 80.4 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000052562 Slc22a30 ENSMUST00000096269 ENSMUSP00000093988 TRANSLATION protein_coding - CCDS29536.1 1 552.0 0.0 4.765 0.0 87.8 18.0 -3,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000052562 Slc22a30 ENSMUST00000064507 ENSMUSP00000069461 TRANSLATION protein_coding - - 1 480.0 0.0 3.565 0.0 70.8 15.0 -3,-7 0.011 - 8.436 MINOR ENSMUSG00000052562 Slc22a30 ENSMUST00000120540 ENSMUSP00000114071 TRANSLATION protein_coding - - 1 438.0 0.0 3.763 0.0 68.4 15.0 -3,-7 0.0125 - 8.67 MINOR ENSMUSG00000039126 Prune2 ENSMUST00000224117 - NO_TRANSLATION retained_intron ENSMUSG00000039126 Prune2 ENSMUST00000223920 ENSMUSP00000153418 TRANSLATION protein_coding - - - 294.0 0.0 4.948 0.7 252.2 0.0 -4,-5 0.0 3 2.766 MINOR ENSMUSG00000039126 Prune2 ENSMUST00000226052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039126 Prune2 ENSMUST00000087689 ENSMUSP00000084977 TRANSLATION protein_coding - CCDS50400.1 5 3084.0 0.0 10.728 0.0 306.1 0.0 -4,-5 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000039126 Prune2 ENSMUST00000225838 - NO_TRANSLATION retained_intron ENSMUSG00000039126 Prune2 ENSMUST00000224602 - NO_TRANSLATION retained_intron ENSMUSG00000039126 Prune2 ENSMUST00000224145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039126 Prune2 ENSMUST00000225351 ENSMUSP00000153135 TRANSLATION protein_coding - - - 323.0 0.0 5.948 0.0 254.6 0.0 -4,-5 0.0636 3 2.91 MINOR ENSMUSG00000039126 Prune2 ENSMUST00000224059 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040663 Clcf1 ENSMUST00000138090 ENSMUSP00000118157 TRANSLATION nonsense_mediated_decay - - 1 44.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0148 - -2.0 MINOR ENSMUSG00000040663 Clcf1 ENSMUST00000126457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040663 Clcf1 ENSMUST00000235355 ENSMUSP00000157886 TRANSLATION protein_coding stop - - 40.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.0586 - -2.0 MINOR ENSMUSG00000040663 Clcf1 ENSMUST00000132305 - NO_TRANSLATION retained_intron ENSMUSG00000040663 Clcf1 ENSMUST00000046506 ENSMUSP00000045562 TRANSLATION protein_coding - CCDS29423.1 1 225.0 0.0 0.448 13.6 0.0 0.0 1,-2 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000024896 Minpp1 ENSMUST00000025827 ENSMUSP00000025827 TRANSLATION protein_coding - CCDS29751.1 1 481.0 7.0 5.0 4.1 120.1 0.0 1,1 1.0 11 20.0 PRINCIPAL:1 ENSMUSG00000024896 Minpp1 ENSMUST00000236287 - NO_TRANSLATION retained_intron ENSMUSG00000096273 Or5b118 ENSMUST00000207529 ENSMUSP00000147143 TRANSLATION protein_coding stop - 3 111.0 0.0 1.0 0.0 75.0 5.0 -3,-5 0.0037 - -2.0 MINOR ENSMUSG00000096273 Or5b118 ENSMUST00000220113 ENSMUSP00000151810 TRANSLATION protein_coding - CCDS29661.1 5 314.0 0.0 3.0 6.4 177.1 8.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096273 Or5b118 ENSMUST00000096202 ENSMUSP00000093916 TRANSLATION protein_coding - CCDS29661.1 - 314.0 0.0 3.0 6.4 177.1 8.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000071653 1810009A15Rik ENSMUST00000187037 - NO_TRANSLATION retained_intron ENSMUSG00000071653 1810009A15Rik ENSMUST00000185488 ENSMUSP00000140221 TRANSLATION nonsense_mediated_decay - - 3 79.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0052 1 -2.0 MINOR ENSMUSG00000071653 1810009A15Rik ENSMUST00000186647 - NO_TRANSLATION retained_intron ENSMUSG00000071653 1810009A15Rik ENSMUST00000190843 - NO_TRANSLATION retained_intron ENSMUSG00000071653 1810009A15Rik ENSMUST00000096251 ENSMUSP00000093970 TRANSLATION protein_coding - CCDS29555.1 1 123.0 0.0 2.0 10.0 0.0 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000050121 Opalin ENSMUST00000087176 ENSMUSP00000084422 TRANSLATION protein_coding - CCDS37985.1 1 143.0 0.0 0.0 5.5 0.0 0.0 -4,-2 0.9893 1 2.0 PRINCIPAL:1 ENSMUSG00000050121 Opalin ENSMUST00000236184 - NO_TRANSLATION retained_intron ENSMUSG00000054843 Atrnl1 ENSMUST00000077282 ENSMUSP00000076514 TRANSLATION protein_coding - CCDS29928.1 1 1378.0 2.0 3.871 6.9 321.4 0.0 -3,1 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000034117 Ptgdr2 ENSMUST00000037261 ENSMUSP00000036159 TRANSLATION protein_coding - CCDS29592.1 1 382.0 0.0 1.0 0.0 129.8 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000010110 Stx5a ENSMUST00000175834 - NO_TRANSLATION retained_intron ENSMUSG00000010110 Stx5a ENSMUST00000176009 - NO_TRANSLATION retained_intron ENSMUSG00000010110 Stx5a ENSMUST00000175901 ENSMUSP00000134951 TRANSLATION protein_coding stop - 5 262.0 0.0 0.0 0.0 48.8 0.0 -4,-7 0.0657 7 -2.0 MINOR ENSMUSG00000010110 Stx5a ENSMUST00000176404 - NO_TRANSLATION retained_intron ENSMUSG00000010110 Stx5a ENSMUST00000175872 ENSMUSP00000135416 TRANSLATION nonsense_mediated_decay - - 5 234.0 0.0 0.0 0.0 48.8 0.0 -4,-7 0.0002 6 -2.0 MINOR ENSMUSG00000010110 Stx5a ENSMUST00000176260 - NO_TRANSLATION retained_intron ENSMUSG00000010110 Stx5a ENSMUST00000176570 ENSMUSP00000134892 TRANSLATION protein_coding - - 2 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000010110 Stx5a ENSMUST00000176314 ENSMUSP00000135348 TRANSLATION protein_coding stop - 3 77.0 0.0 0.0 0.0 48.8 0.0 -4,-7 0.0002 3 -2.0 MINOR ENSMUSG00000010110 Stx5a ENSMUST00000176844 - NO_TRANSLATION retained_intron ENSMUSG00000010110 Stx5a ENSMUST00000073430 ENSMUSP00000073136 TRANSLATION protein_coding - CCDS29542.2 1 355.0 0.0 0.8 0.0 110.7 1.0 -4,-7 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000010110 Stx5a ENSMUST00000176381 ENSMUSP00000134854 TRANSLATION protein_coding - CCDS29542.2 1 355.0 0.0 0.8 0.0 110.7 1.0 -4,-7 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000010110 Stx5a ENSMUST00000176182 - NO_TRANSLATION retained_intron ENSMUSG00000010110 Stx5a ENSMUST00000176968 ENSMUSP00000135468 TRANSLATION protein_coding stop - 2 109.0 0.0 0.8 0.0 61.9 1.0 -4,-5 0.0513 2 -2.0 MINOR ENSMUSG00000010110 Stx5a ENSMUST00000177322 ENSMUSP00000135624 TRANSLATION nonsense_mediated_decay - - 5 101.0 0.0 0.0 0.0 48.8 0.0 -4,-7 0.0002 3 -2.0 MINOR ENSMUSG00000010110 Stx5a ENSMUST00000176013 ENSMUSP00000135465 TRANSLATION nonsense_mediated_decay - - 5 144.0 0.0 0.0 0.0 48.8 0.0 -4,-7 0.0002 4 -2.0 MINOR ENSMUSG00000010110 Stx5a ENSMUST00000176093 - NO_TRANSLATION retained_intron ENSMUSG00000010110 Stx5a ENSMUST00000010254 ENSMUSP00000010254 TRANSLATION protein_coding - - 5 442.0 3.0 0.4 0.0 48.8 0.0 -4,-7 0.0 8 8.286 MINOR ENSMUSG00000010110 Stx5a ENSMUST00000177373 ENSMUSP00000134794 TRANSLATION protein_coding - - 5 259.0 0.0 0.8 0.0 61.9 1.0 -4,-7 0.0522 5 9.072 MINOR ENSMUSG00000010110 Stx5a ENSMUST00000175642 - NO_TRANSLATION retained_intron ENSMUSG00000024758 Rtn3 ENSMUST00000088171 ENSMUSP00000085496 TRANSLATION protein_coding - CCDS29525.1 1 945.0 0.0 4.4 0.0 148.6 2.0 -4,-5 0.3357 32 12.0 MINOR ENSMUSG00000024758 Rtn3 ENSMUST00000235593 ENSMUSP00000158024 TRANSLATION protein_coding - - - 643.0 0.0 4.4 0.0 148.6 2.0 -4,-5 0.0994 13 12.0 MINOR ENSMUSG00000024758 Rtn3 ENSMUST00000065304 ENSMUSP00000065810 TRANSLATION protein_coding - CCDS37906.1 1 964.0 0.0 4.4 0.0 148.6 2.0 -4,-5 0.3442 31 12.0 MINOR ENSMUSG00000024758 Rtn3 ENSMUST00000088169 ENSMUSP00000085494 TRANSLATION protein_coding - CCDS29526.1 5 237.0 0.0 4.4 10.5 148.6 2.0 -4,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000024758 Rtn3 ENSMUST00000025667 ENSMUSP00000025667 TRANSLATION protein_coding - CCDS70927.1 1 256.0 0.0 4.4 5.6 148.6 2.0 -4,-5 0.777 2 13.452 MINOR ENSMUSG00000049015 Or5b113 ENSMUST00000054687 ENSMUSP00000061580 TRANSLATION protein_coding - CCDS29657.1 - 308.0 0.0 1.0 0.0 161.9 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049015 Or5b113 ENSMUST00000215096 ENSMUSP00000149487 TRANSLATION protein_coding - CCDS29657.1 5 308.0 0.0 1.0 0.0 161.9 6.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025213 Kazald1 ENSMUST00000111948 ENSMUSP00000107579 TRANSLATION protein_coding - CCDS29857.1 1 313.0 0.0 3.4 1.4 114.7 0.0 1,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000025213 Kazald1 ENSMUST00000026234 ENSMUSP00000026234 TRANSLATION protein_coding - CCDS29857.1 1 313.0 0.0 3.4 1.4 114.7 0.0 1,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000025090 Ccdc172 ENSMUST00000069419 ENSMUSP00000068972 TRANSLATION protein_coding - CCDS38029.1 1 267.0 0.0 5.95 1.0 0.0 0.0 -4,-5 0.9884 - 6.0 PRINCIPAL:1 ENSMUSG00000025090 Ccdc172 ENSMUST00000235305 ENSMUSP00000158558 TRANSLATION protein_coding - - - 200.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.0076 - 1.098 MINOR ENSMUSG00000024774 Ankrd22 ENSMUST00000160474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024774 Ankrd22 ENSMUST00000159887 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024774 Ankrd22 ENSMUST00000025686 ENSMUSP00000025686 TRANSLATION protein_coding - CCDS37963.1 1 191.0 0.0 4.764 27.6 75.6 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000003555 Cyp17a1 ENSMUST00000026012 ENSMUSP00000026012 TRANSLATION protein_coding - CCDS29882.1 1 507.0 30.0 7.55 11.0 464.0 0.0 1,-3 1.0 12 18.336 PRINCIPAL:1 ENSMUSG00000003555 Cyp17a1 ENSMUST00000131142 - NO_TRANSLATION retained_intron ENSMUSG00000003555 Cyp17a1 ENSMUST00000156577 - NO_TRANSLATION retained_intron ENSMUSG00000003555 Cyp17a1 ENSMUST00000236174 ENSMUSP00000157718 TRANSLATION protein_coding - - - 455.0 34.0 6.95 0.0 377.8 0.0 1,-3 0.006 9 11.628 MINOR ENSMUSG00000025225 Nfkb2 ENSMUST00000236820 - NO_TRANSLATION retained_intron ENSMUSG00000025225 Nfkb2 ENSMUST00000236591 ENSMUSP00000157542 TRANSLATION protein_coding - CCDS29874.1 - 899.0 0.0 16.016 9.2 458.5 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000025225 Nfkb2 ENSMUST00000111881 ENSMUSP00000107512 TRANSLATION protein_coding - CCDS29874.1 1 899.0 0.0 16.016 9.2 458.5 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000025225 Nfkb2 ENSMUST00000237791 ENSMUSP00000158143 TRANSLATION nonsense_mediated_decay - - - 776.0 0.0 12.516 0.0 429.8 0.0 -4,-5 0.0179 10 -2.0 MINOR ENSMUSG00000025225 Nfkb2 ENSMUST00000237761 - NO_TRANSLATION retained_intron ENSMUSG00000025225 Nfkb2 ENSMUST00000235868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025225 Nfkb2 ENSMUST00000237330 ENSMUSP00000157809 TRANSLATION protein_coding - - - 878.0 0.0 16.016 0.0 458.5 0.0 -4,-5 0.1226 11 12.0 MINOR ENSMUSG00000025225 Nfkb2 ENSMUST00000073116 ENSMUSP00000072859 TRANSLATION protein_coding - CCDS29874.1 1 899.0 0.0 16.016 9.2 458.5 0.0 -4,-5 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000025068 Gsto1 ENSMUST00000237472 ENSMUSP00000158012 TRANSLATION nonsense_mediated_decay - - - 166.0 10.0 4.764 0.0 71.5 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000025068 Gsto1 ENSMUST00000026050 ENSMUSP00000026050 TRANSLATION protein_coding - CCDS29893.1 1 240.0 10.0 6.91 14.1 106.8 0.0 -4,-7 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000025068 Gsto1 ENSMUST00000130157 - NO_TRANSLATION retained_intron ENSMUSG00000025068 Gsto1 ENSMUST00000236902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025068 Gsto1 ENSMUST00000237121 ENSMUSP00000157808 TRANSLATION protein_coding stop - - 108.0 10.0 2.632 0.0 56.2 0.0 -4,-7 0.0005 2 -2.0 MINOR ENSMUSG00000025068 Gsto1 ENSMUST00000143694 - NO_TRANSLATION retained_intron ENSMUSG00000048138 Dmrt2 ENSMUST00000053068 ENSMUSP00000059654 TRANSLATION protein_coding - CCDS29719.1 1 561.0 8.0 0.8 4.8 75.3 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000018821 Avpi1 ENSMUST00000018965 ENSMUSP00000018965 TRANSLATION protein_coding - CCDS29822.1 1 142.0 0.0 1.198 10.3 99.4 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018821 Avpi1 ENSMUST00000161873 ENSMUSP00000124617 TRANSLATION protein_coding stop - 3 79.0 0.0 1.0 0.0 99.4 0.0 -4,-6 0.0125 - -2.0 MINOR ENSMUSG00000041362 Shtn1 ENSMUST00000163821 ENSMUSP00000126227 TRANSLATION protein_coding - CCDS50480.1 1 456.0 0.0 0.0 5.8 0.0 0.0 -4,-5 0.6568 18 1.947 ALTERNATIVE:1 ENSMUSG00000041362 Shtn1 ENSMUST00000237215 - NO_TRANSLATION retained_intron ENSMUSG00000041362 Shtn1 ENSMUST00000047511 ENSMUSP00000041378 TRANSLATION protein_coding - CCDS50481.1 1 631.0 0.0 0.0 8.4 0.0 0.0 -4,-5 1.0 22 3.0 PRINCIPAL:2 ENSMUSG00000024910 Ctsw ENSMUST00000236256 ENSMUSP00000157959 TRANSLATION protein_coding - - - 342.0 3.0 4.7 0.0 233.3 0.0 3,-2 0.007 2 12.63 MINOR ENSMUSG00000024910 Ctsw ENSMUST00000025844 ENSMUSP00000025844 TRANSLATION protein_coding - CCDS29465.1 1 371.0 4.0 5.18 6.4 256.8 0.0 3,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000024910 Ctsw ENSMUST00000237556 - NO_TRANSLATION retained_intron ENSMUSG00000024910 Ctsw ENSMUST00000236091 - NO_TRANSLATION retained_intron ENSMUSG00000024910 Ctsw ENSMUST00000235502 - NO_TRANSLATION retained_intron ENSMUSG00000024910 Ctsw ENSMUST00000235786 - NO_TRANSLATION retained_intron ENSMUSG00000060675 Plaat3 ENSMUST00000136465 ENSMUSP00000119403 TRANSLATION protein_coding - - 1 168.0 0.0 2.75 0.0 136.2 0.0 -4,-5 0.0137 3 11.592 MINOR ENSMUSG00000060675 Plaat3 ENSMUST00000136756 ENSMUSP00000115151 TRANSLATION protein_coding - CCDS29528.1 1 162.0 0.0 2.95 13.3 136.2 1.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000060675 Plaat3 ENSMUST00000025925 ENSMUSP00000025925 TRANSLATION protein_coding - CCDS29528.1 1 162.0 0.0 2.95 13.3 136.2 1.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000060675 Plaat3 ENSMUST00000141887 ENSMUSP00000123524 TRANSLATION protein_coding stop - 5 99.0 0.0 2.0 0.0 93.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024853 Sf3b2 ENSMUST00000235368 - NO_TRANSLATION retained_intron ENSMUSG00000024853 Sf3b2 ENSMUST00000235182 ENSMUSP00000157795 TRANSLATION protein_coding stop - - 308.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.001 8 -2.0 MINOR ENSMUSG00000024853 Sf3b2 ENSMUST00000237512 - NO_TRANSLATION retained_intron ENSMUSG00000024853 Sf3b2 ENSMUST00000236695 - NO_TRANSLATION retained_intron ENSMUSG00000024853 Sf3b2 ENSMUST00000235772 - NO_TRANSLATION retained_intron ENSMUSG00000024853 Sf3b2 ENSMUST00000237781 - NO_TRANSLATION retained_intron ENSMUSG00000024853 Sf3b2 ENSMUST00000025774 ENSMUSP00000025774 TRANSLATION protein_coding - CCDS29454.1 1 878.0 0.0 7.8 2.9 267.8 0.0 -4,-5 1.0 19 13.0 PRINCIPAL:1 ENSMUSG00000024853 Sf3b2 ENSMUST00000236014 - NO_TRANSLATION retained_intron ENSMUSG00000025194 Abcc2 ENSMUST00000026208 ENSMUSP00000026208 TRANSLATION protein_coding - CCDS29838.1 1 1543.0 22.0 13.895 8.1 448.5 0.0 -4,-7 1.0 24 21.0 PRINCIPAL:1 ENSMUSG00000025194 Abcc2 ENSMUST00000129943 - NO_TRANSLATION retained_intron ENSMUSG00000025194 Abcc2 ENSMUST00000146737 - NO_TRANSLATION retained_intron ENSMUSG00000025194 Abcc2 ENSMUST00000143553 - NO_TRANSLATION retained_intron ENSMUSG00000025194 Abcc2 ENSMUST00000099413 ENSMUSP00000097010 TRANSLATION protein_coding - - - 44.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000025094 Slc18a2 ENSMUST00000236270 - NO_TRANSLATION retained_intron ENSMUSG00000025094 Slc18a2 ENSMUST00000026084 ENSMUSP00000026084 TRANSLATION protein_coding - CCDS29935.1 1 517.0 0.0 3.578 11.4 132.3 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000042179 Pnliprp1 ENSMUST00000048644 ENSMUSP00000045465 TRANSLATION protein_coding - CCDS29931.1 1 473.0 11.0 11.58 1.8 567.0 0.0 4,-1 1.0 19 19.0 PRINCIPAL:1 ENSMUSG00000042179 Pnliprp1 ENSMUST00000235738 - NO_TRANSLATION retained_intron ENSMUSG00000042179 Pnliprp1 ENSMUST00000235457 - NO_TRANSLATION retained_intron ENSMUSG00000042179 Pnliprp1 ENSMUST00000235509 - NO_TRANSLATION retained_intron ENSMUSG00000042179 Pnliprp1 ENSMUST00000236445 ENSMUSP00000157947 TRANSLATION protein_coding stop - - 252.0 7.0 6.08 0.0 352.7 0.0 4,-1 0.0 7 -2.0 MINOR ENSMUSG00000042179 Pnliprp1 ENSMUST00000235461 ENSMUSP00000157428 TRANSLATION nonsense_mediated_decay start - - 35.0 1.0 1.0 0.0 37.8 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000043531 Sorcs1 ENSMUST00000211008 ENSMUSP00000147456 TRANSLATION protein_coding - - 1 1179.0 0.0 19.65 5.8 510.8 1.0 0,-3 0.9346 11 10.0 ALTERNATIVE:1 ENSMUSG00000043531 Sorcs1 ENSMUST00000209413 ENSMUSP00000147463 TRANSLATION protein_coding - CCDS84452.1 1 1192.0 0.0 19.65 0.4 510.8 1.0 0,-3 0.6106 11 8.0 MINOR ENSMUSG00000043531 Sorcs1 ENSMUST00000211687 ENSMUSP00000147591 TRANSLATION protein_coding - CCDS84453.1 1 1168.0 0.0 19.65 4.7 510.8 1.0 0,-3 1.0 11 9.542 PRINCIPAL:4 ENSMUSG00000043531 Sorcs1 ENSMUST00000168357 ENSMUSP00000129190 TRANSLATION nonsense_mediated_decay start - 1 51.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000043531 Sorcs1 ENSMUST00000209783 ENSMUSP00000148254 TRANSLATION protein_coding - CCDS84451.1 1 1148.0 0.0 19.65 0.0 510.8 1.0 0,-3 0.5115 11 8.0 MINOR ENSMUSG00000071652 Ints5 ENSMUST00000096249 ENSMUSP00000093968 TRANSLATION protein_coding - CCDS29556.1 1 1018.0 0.0 1.0 10.3 1080.4 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000025199 Chuk ENSMUST00000119591 ENSMUSP00000113809 TRANSLATION protein_coding - CCDS50444.1 1 719.0 0.0 16.75 6.0 182.9 0.0 -4,-6 0.5446 12 9.75 MINOR ENSMUSG00000025199 Chuk ENSMUST00000144286 - NO_TRANSLATION retained_intron ENSMUSG00000025199 Chuk ENSMUST00000147423 - NO_TRANSLATION retained_intron ENSMUSG00000025199 Chuk ENSMUST00000026217 ENSMUSP00000026217 TRANSLATION protein_coding - CCDS29843.1 1 745.0 0.0 16.75 12.8 241.6 0.0 -4,-6 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000025199 Chuk ENSMUST00000146861 - NO_TRANSLATION retained_intron ENSMUSG00000025199 Chuk ENSMUST00000134495 - NO_TRANSLATION retained_intron ENSMUSG00000025199 Chuk ENSMUST00000149091 - NO_TRANSLATION retained_intron ENSMUSG00000025199 Chuk ENSMUST00000123806 - NO_TRANSLATION retained_intron ENSMUSG00000057858 Fam204a ENSMUST00000235995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057858 Fam204a ENSMUST00000065286 ENSMUSP00000063913 TRANSLATION protein_coding - CCDS29939.1 1 236.0 0.0 0.0 11.1 0.0 0.0 -4,-5 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000057858 Fam204a ENSMUST00000235293 ENSMUSP00000158173 TRANSLATION nonsense_mediated_decay - - - 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0111 - -2.0 MINOR ENSMUSG00000057858 Fam204a ENSMUST00000238054 ENSMUSP00000158259 TRANSLATION protein_coding - CCDS29939.1 - 236.0 0.0 0.0 11.1 0.0 0.0 -4,-5 1.0 1 3.0 PRINCIPAL:1 ENSMUSG00000057858 Fam204a ENSMUST00000238119 ENSMUSP00000157480 TRANSLATION nonsense_mediated_decay - - - 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0111 - -2.0 MINOR ENSMUSG00000057858 Fam204a ENSMUST00000237120 - NO_TRANSLATION retained_intron ENSMUSG00000057858 Fam204a ENSMUST00000237339 ENSMUSP00000157433 TRANSLATION nonsense_mediated_decay - - - 83.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0111 - -2.0 MINOR ENSMUSG00000084957 Bbip1 ENSMUST00000135402 ENSMUSP00000136324 TRANSLATION protein_coding - CCDS57147.1 1 67.0 0.0 1.5 3.7 111.2 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000084957 Bbip1 ENSMUST00000237049 - NO_TRANSLATION retained_intron ENSMUSG00000084957 Bbip1 ENSMUST00000236098 ENSMUSP00000158055 TRANSLATION protein_coding - CCDS57147.1 - 67.0 0.0 1.5 3.7 111.2 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000084957 Bbip1 ENSMUST00000236900 - NO_TRANSLATION retained_intron ENSMUSG00000084957 Bbip1 ENSMUST00000236127 - NO_TRANSLATION retained_intron ENSMUSG00000084957 Bbip1 ENSMUST00000236370 ENSMUSP00000158142 TRANSLATION protein_coding - CCDS57147.1 - 67.0 0.0 1.5 3.7 111.2 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000084957 Bbip1 ENSMUST00000235348 ENSMUSP00000157613 TRANSLATION protein_coding - CCDS57147.1 - 67.0 0.0 1.5 3.7 111.2 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000084957 Bbip1 ENSMUST00000235688 ENSMUSP00000157634 TRANSLATION protein_coding - CCDS57147.1 - 67.0 0.0 1.5 3.7 111.2 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000084957 Bbip1 ENSMUST00000236885 ENSMUSP00000158555 TRANSLATION protein_coding - CCDS57147.1 - 67.0 0.0 1.5 3.7 111.2 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000024654 Asrgl1 ENSMUST00000049948 ENSMUSP00000051709 TRANSLATION protein_coding - CCDS29566.1 1 326.0 9.0 5.8 0.0 358.7 0.0 -3,-1 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000024654 Asrgl1 ENSMUST00000150353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006464 Bbs1 ENSMUST00000237085 ENSMUSP00000157393 TRANSLATION protein_coding - - - 496.0 5.0 10.33 0.0 159.7 0.0 -4,-5 0.0022 12 5.342 MINOR ENSMUSG00000006464 Bbs1 ENSMUST00000053506 ENSMUSP00000055321 TRANSLATION protein_coding - CCDS29442.1 1 593.0 5.0 13.16 5.9 336.4 0.0 -4,-5 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000006464 Bbs1 ENSMUST00000235498 - NO_TRANSLATION retained_intron ENSMUSG00000006464 Bbs1 ENSMUST00000236150 - NO_TRANSLATION retained_intron ENSMUSG00000006464 Bbs1 ENSMUST00000237362 ENSMUSP00000157728 TRANSLATION nonsense_mediated_decay - - - 164.0 5.0 2.08 0.0 165.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000006464 Bbs1 ENSMUST00000237638 - NO_TRANSLATION retained_intron ENSMUSG00000006464 Bbs1 ENSMUST00000238170 ENSMUSP00000157830 TRANSLATION protein_coding - - - 452.0 5.0 9.51 0.0 282.9 0.0 -4,-5 0.0006 10 7.79 MINOR ENSMUSG00000006464 Bbs1 ENSMUST00000236538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025212 Sfxn3 ENSMUST00000062213 ENSMUSP00000059419 TRANSLATION protein_coding - CCDS29856.1 1 321.0 0.0 5.415 36.9 504.0 3.0 -4,-6 1.0 13 16.0 PRINCIPAL:1 ENSMUSG00000025212 Sfxn3 ENSMUST00000237222 ENSMUSP00000158407 TRANSLATION protein_coding stop - - 110.0 0.0 1.6 0.0 156.3 0.0 -4,-6 0.0 5 -2.0 MINOR ENSMUSG00000025212 Sfxn3 ENSMUST00000111954 ENSMUSP00000107585 TRANSLATION protein_coding - CCDS50448.1 5 288.0 0.0 4.415 0.0 418.9 3.0 -4,-5 0.0153 13 4.896 MINOR ENSMUSG00000025212 Sfxn3 ENSMUST00000084493 ENSMUSP00000081537 TRANSLATION protein_coding - CCDS50447.1 1 281.0 0.0 4.585 0.0 357.4 1.0 -4,-6 0.01 11 4.338 MINOR ENSMUSG00000025212 Sfxn3 ENSMUST00000235155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025212 Sfxn3 ENSMUST00000236638 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000058624 Gda ENSMUST00000121725 ENSMUSP00000112758 TRANSLATION protein_coding - - 1 380.0 18.0 10.16 6.3 257.5 0.0 -4,-5 1.0 19 15.968 MINOR ENSMUSG00000058624 Gda ENSMUST00000136258 - NO_TRANSLATION retained_intron ENSMUSG00000058624 Gda ENSMUST00000237823 ENSMUSP00000157532 TRANSLATION protein_coding - - - 429.0 18.0 11.16 0.0 258.0 0.0 -4,-5 0.0364 21 16.002 MINOR ENSMUSG00000058624 Gda ENSMUST00000087600 ENSMUSP00000084882 TRANSLATION protein_coding - CCDS29698.1 1 454.0 18.0 12.16 0.0 258.0 0.0 -2,0 0.8671 24 18.0 PRINCIPAL:1 ENSMUSG00000063590 Slc22a28 ENSMUST00000065651 ENSMUSP00000067114 TRANSLATION protein_coding - CCDS29534.1 1 552.0 0.0 4.765 4.8 88.0 0.0 -3,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025020 Slit1 ENSMUST00000171586 ENSMUSP00000126139 TRANSLATION protein_coding stop - 5 380.0 0.0 8.4 0.0 225.5 0.0 0,-4 0.0 5 -2.0 MINOR ENSMUSG00000025020 Slit1 ENSMUST00000169141 ENSMUSP00000129034 TRANSLATION protein_coding - - 5 1458.0 0.0 24.108 0.0 763.2 0.0 0,-4 0.3037 17 12.0 MINOR ENSMUSG00000025020 Slit1 ENSMUST00000025993 ENSMUSP00000025993 TRANSLATION protein_coding - CCDS29812.1 1 1531.0 0.0 24.108 7.8 763.2 0.0 0,-4 1.0 18 14.0 PRINCIPAL:1 ENSMUSG00000025020 Slit1 ENSMUST00000166496 ENSMUSP00000128381 TRANSLATION protein_coding - - 5 1458.0 0.0 24.108 0.0 763.2 0.0 0,-4 0.3037 17 12.0 MINOR ENSMUSG00000025020 Slit1 ENSMUST00000169416 - NO_TRANSLATION retained_intron ENSMUSG00000025209 Twnk ENSMUST00000026227 ENSMUSP00000026227 TRANSLATION protein_coding - CCDS29854.1 1 685.0 7.0 0.412 8.4 33.7 0.0 -3,0 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000025209 Twnk ENSMUST00000236685 ENSMUSP00000157397 TRANSLATION protein_coding - - - 230.0 0.0 0.292 3.2 0.0 0.0 -4,-5 0.0695 2 5.145 MINOR ENSMUSG00000024900 Cpt1a ENSMUST00000237938 ENSMUSP00000158035 TRANSLATION protein_coding stop - - 401.0 3.0 9.0 0.0 342.2 1.0 -4,-6 0.0006 10 -2.0 MINOR ENSMUSG00000024900 Cpt1a ENSMUST00000237562 ENSMUSP00000158480 TRANSLATION protein_coding stop - - 185.0 0.0 4.0 0.0 97.4 1.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024900 Cpt1a ENSMUST00000235968 - NO_TRANSLATION retained_intron ENSMUSG00000024900 Cpt1a ENSMUST00000025835 ENSMUSP00000025835 TRANSLATION protein_coding - CCDS29395.1 1 773.0 27.0 17.75 24.5 752.1 1.0 -4,-6 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000024900 Cpt1a ENSMUST00000238027 - NO_TRANSLATION retained_intron ENSMUSG00000024900 Cpt1a ENSMUST00000237457 - NO_TRANSLATION retained_intron ENSMUSG00000024900 Cpt1a ENSMUST00000237444 - NO_TRANSLATION retained_intron ENSMUSG00000024900 Cpt1a ENSMUST00000238015 ENSMUSP00000157988 TRANSLATION protein_coding stop - - 251.0 0.0 5.0 0.0 153.8 1.0 -4,-6 0.0015 3 -2.0 MINOR ENSMUSG00000057817 Or5b96 ENSMUST00000081236 ENSMUSP00000079994 TRANSLATION protein_coding - CCDS29642.1 - 308.0 0.0 2.0 2.5 173.5 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057817 Or5b96 ENSMUST00000216805 ENSMUSP00000149198 TRANSLATION protein_coding - CCDS29642.1 3 308.0 0.0 2.0 2.5 173.5 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057817 Or5b96 ENSMUST00000207741 ENSMUSP00000146402 TRANSLATION protein_coding stop - 3 89.0 0.0 1.0 0.0 34.8 1.0 -4,-6 0.0017 - -2.0 MINOR ENSMUSG00000034820 Cpsf7 ENSMUST00000236154 - NO_TRANSLATION retained_intron ENSMUSG00000034820 Cpsf7 ENSMUST00000235162 - NO_TRANSLATION retained_intron ENSMUSG00000034820 Cpsf7 ENSMUST00000236206 ENSMUSP00000158553 TRANSLATION nonsense_mediated_decay - - - 101.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034820 Cpsf7 ENSMUST00000038379 ENSMUSP00000038958 TRANSLATION protein_coding - CCDS29579.1 1 471.0 0.0 2.95 10.1 26.2 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000034820 Cpsf7 ENSMUST00000238102 ENSMUSP00000158218 TRANSLATION nonsense_mediated_decay start - - 67.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000034820 Cpsf7 ENSMUST00000237321 ENSMUSP00000157834 TRANSLATION protein_coding - CCDS29579.1 - 471.0 0.0 2.95 10.1 26.2 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000034820 Cpsf7 ENSMUST00000235674 ENSMUSP00000157799 TRANSLATION protein_coding stop - - 150.0 0.0 1.95 0.0 23.9 0.0 -4,-5 0.0056 5 -2.0 MINOR ENSMUSG00000034820 Cpsf7 ENSMUST00000236706 ENSMUSP00000158164 TRANSLATION nonsense_mediated_decay start - - 71.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038658 Ric1 ENSMUST00000160221 - NO_TRANSLATION retained_intron ENSMUSG00000038658 Ric1 ENSMUST00000162184 - NO_TRANSLATION retained_intron ENSMUSG00000038658 Ric1 ENSMUST00000162492 ENSMUSP00000124727 TRANSLATION protein_coding start - 5 1314.0 0.0 0.0 0.0 272.3 0.0 -4,-6 0.1807 14 -2.0 MINOR ENSMUSG00000038658 Ric1 ENSMUST00000043610 ENSMUSP00000043437 TRANSLATION protein_coding - CCDS37951.1 5 1422.0 0.0 0.0 11.4 272.3 0.0 -4,-1 1.0 16 9.0 PRINCIPAL:1 ENSMUSG00000038658 Ric1 ENSMUST00000160452 ENSMUSP00000125299 TRANSLATION nonsense_mediated_decay start - 1 163.0 0.0 0.0 0.0 189.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000038658 Ric1 ENSMUST00000161330 ENSMUSP00000125709 TRANSLATION nonsense_mediated_decay start - 1 444.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0019 3 -2.0 MINOR ENSMUSG00000038658 Ric1 ENSMUST00000161536 - NO_TRANSLATION retained_intron ENSMUSG00000024666 Tmem138 ENSMUST00000236099 ENSMUSP00000157715 TRANSLATION protein_coding - CCDS29581.1 - 162.0 0.0 4.75 33.9 161.4 4.0 -3,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000024666 Tmem138 ENSMUST00000235990 ENSMUSP00000157691 TRANSLATION nonsense_mediated_decay - - - 59.0 0.0 1.0 0.0 0.0 2.0 -2,-4 0.0017 - -2.0 MINOR ENSMUSG00000024666 Tmem138 ENSMUST00000025568 ENSMUSP00000025568 TRANSLATION protein_coding - CCDS29581.1 1 162.0 0.0 4.75 33.9 161.4 4.0 -3,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000024666 Tmem138 ENSMUST00000236185 ENSMUSP00000158212 TRANSLATION protein_coding - - - 225.0 0.0 3.5 0.0 107.1 4.0 -3,-5 0.0043 - 6.24 MINOR ENSMUSG00000024666 Tmem138 ENSMUST00000236958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024867 Pip5k1b ENSMUST00000156814 - NO_TRANSLATION retained_intron ENSMUSG00000024867 Pip5k1b ENSMUST00000112673 ENSMUSP00000108292 TRANSLATION protein_coding - - 1 487.0 4.0 5.75 0.0 311.3 0.0 -4,-5 0.036 4 16.0 MINOR ENSMUSG00000024867 Pip5k1b ENSMUST00000025800 ENSMUSP00000025800 TRANSLATION protein_coding - CCDS37940.1 1 539.0 4.0 5.75 19.3 311.3 0.0 -4,-5 1.0 5 20.0 PRINCIPAL:1 ENSMUSG00000024867 Pip5k1b ENSMUST00000145829 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024867 Pip5k1b ENSMUST00000134360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041488 Stx3 ENSMUST00000211641 ENSMUSP00000147398 TRANSLATION protein_coding - CCDS29612.1 1 269.0 0.0 6.329 0.0 244.2 1.0 -4,-5 0.029 5 5.2 MINOR ENSMUSG00000041488 Stx3 ENSMUST00000209304 - NO_TRANSLATION retained_intron ENSMUSG00000041488 Stx3 ENSMUST00000047698 ENSMUSP00000037317 TRANSLATION nonsense_mediated_decay - - 1 86.0 0.0 1.3 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000041488 Stx3 ENSMUST00000210481 - NO_TRANSLATION retained_intron ENSMUSG00000041488 Stx3 ENSMUST00000069285 ENSMUSP00000069529 TRANSLATION protein_coding - CCDS29613.1 1 289.0 0.0 7.08 24.0 274.0 1.0 -4,-5 1.0 6 11.7 ALTERNATIVE:1 ENSMUSG00000041488 Stx3 ENSMUST00000211047 ENSMUSP00000147461 TRANSLATION protein_coding - - 5 289.0 0.0 6.646 18.0 255.2 1.0 -4,-5 0.7474 5 9.786 MINOR ENSMUSG00000041488 Stx3 ENSMUST00000075304 ENSMUSP00000074776 TRANSLATION protein_coding - CCDS29611.1 1 287.0 0.0 7.23 21.6 264.5 1.0 -4,-5 0.9731 7 11.584 PRINCIPAL:3 ENSMUSG00000041488 Stx3 ENSMUST00000211089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024871 Doc2g ENSMUST00000127016 - NO_TRANSLATION retained_intron ENSMUSG00000024871 Doc2g ENSMUST00000236482 ENSMUSP00000158285 TRANSLATION protein_coding stop - - 196.0 0.0 3.0 0.0 48.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024871 Doc2g ENSMUST00000235829 - NO_TRANSLATION retained_intron ENSMUSG00000024871 Doc2g ENSMUST00000147806 - NO_TRANSLATION retained_intron ENSMUSG00000024871 Doc2g ENSMUST00000138917 - NO_TRANSLATION retained_intron ENSMUSG00000024871 Doc2g ENSMUST00000025806 ENSMUSP00000025806 TRANSLATION protein_coding - CCDS29409.1 1 387.0 7.0 7.3 1.5 117.6 0.0 -4,-2 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000067525 Or4z4 ENSMUST00000216845 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067525 Or4z4 ENSMUST00000087825 ENSMUSP00000085127 TRANSLATION protein_coding - CCDS29621.1 - 311.0 0.0 1.0 12.5 160.8 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067525 Or4z4 ENSMUST00000215374 ENSMUSP00000149787 TRANSLATION protein_coding - CCDS29621.1 5 311.0 0.0 1.0 12.5 160.8 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067525 Or4z4 ENSMUST00000216069 ENSMUSP00000150457 TRANSLATION protein_coding - CCDS29621.1 5 311.0 0.0 1.0 12.5 160.8 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046324 Ermp1 ENSMUST00000159243 - NO_TRANSLATION retained_intron ENSMUSG00000046324 Ermp1 ENSMUST00000161749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046324 Ermp1 ENSMUST00000160907 - NO_TRANSLATION retained_intron ENSMUSG00000046324 Ermp1 ENSMUST00000161124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046324 Ermp1 ENSMUST00000160125 - NO_TRANSLATION retained_intron ENSMUSG00000046324 Ermp1 ENSMUST00000159692 ENSMUSP00000124881 TRANSLATION protein_coding - CCDS37952.1 1 898.0 4.0 12.05 5.0 160.3 8.0 -4,-7 1.0 10 18.0 PRINCIPAL:1 ENSMUSG00000046324 Ermp1 ENSMUST00000162534 ENSMUSP00000124992 TRANSLATION nonsense_mediated_decay start - 5 417.0 4.0 5.87 0.0 153.1 5.0 -4,-5 0.0155 4 -2.0 MINOR ENSMUSG00000046324 Ermp1 ENSMUST00000054083 ENSMUSP00000057069 TRANSLATION nonsense_mediated_decay start - 5 170.0 0.0 1.89 0.0 0.0 0.0 0,-3 0.0026 3 -2.0 MINOR ENSMUSG00000056481 Cd248 ENSMUST00000070630 ENSMUSP00000070847 TRANSLATION protein_coding - CCDS29448.1 - 765.0 5.0 0.0 0.3 70.0 0.0 4,-1 1.0 6 11.0 PRINCIPAL:1 ENSMUSG00000032946 Rasgrp2 ENSMUST00000113468 ENSMUSP00000109096 TRANSLATION protein_coding stop - 5 97.0 0.0 2.83 0.0 32.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000130480 - NO_TRANSLATION retained_intron ENSMUSG00000032946 Rasgrp2 ENSMUST00000113469 ENSMUSP00000109097 TRANSLATION protein_coding - - 5 70.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000152022 - NO_TRANSLATION retained_intron ENSMUSG00000032946 Rasgrp2 ENSMUST00000113475 ENSMUSP00000109103 TRANSLATION protein_coding - - 5 141.0 0.0 3.58 0.1 36.2 0.0 -4,-5 0.0011 2 0.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000035716 ENSMUSP00000041135 TRANSLATION protein_coding - CCDS37898.1 2 608.0 8.0 12.16 16.2 255.8 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000032946 Rasgrp2 ENSMUST00000113472 ENSMUSP00000109100 TRANSLATION protein_coding - - 1 141.0 0.0 3.58 0.1 36.2 0.0 -4,-5 0.0011 2 0.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000146601 ENSMUSP00000117681 TRANSLATION protein_coding stop - 5 58.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000113476 ENSMUSP00000109104 TRANSLATION protein_coding - CCDS37898.1 5 608.0 8.0 12.16 16.2 255.8 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000032946 Rasgrp2 ENSMUST00000135532 - NO_TRANSLATION retained_intron ENSMUSG00000032946 Rasgrp2 ENSMUST00000123661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032946 Rasgrp2 ENSMUST00000133968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032946 Rasgrp2 ENSMUST00000146831 ENSMUSP00000120630 TRANSLATION protein_coding stop - 3 164.0 0.0 4.58 0.0 36.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000127021 ENSMUSP00000119740 TRANSLATION nonsense_mediated_decay - - 5 70.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000150713 ENSMUSP00000120949 TRANSLATION protein_coding stop - 3 95.0 0.0 2.83 0.0 31.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000113467 ENSMUSP00000109095 TRANSLATION protein_coding - - 2 60.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000167240 ENSMUSP00000129873 TRANSLATION protein_coding - CCDS37898.1 5 608.0 8.0 12.16 16.2 255.8 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000032946 Rasgrp2 ENSMUST00000139522 ENSMUSP00000123036 TRANSLATION nonsense_mediated_decay - - 3 125.0 0.0 3.58 0.0 36.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000138555 ENSMUSP00000121635 TRANSLATION protein_coding stop - 3 231.0 0.0 5.91 0.0 84.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000113471 ENSMUSP00000109099 TRANSLATION protein_coding - - 1 141.0 0.0 3.58 0.1 36.2 0.0 -4,-5 0.0011 2 0.0 MINOR ENSMUSG00000032946 Rasgrp2 ENSMUST00000149205 - NO_TRANSLATION retained_intron ENSMUSG00000032946 Rasgrp2 ENSMUST00000145611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032946 Rasgrp2 ENSMUST00000148906 - NO_TRANSLATION retained_intron ENSMUSG00000032946 Rasgrp2 ENSMUST00000122930 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024968 Rcor2 ENSMUST00000140442 ENSMUSP00000114858 TRANSLATION protein_coding stop - 3 76.0 0.0 0.5 0.0 27.5 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024968 Rcor2 ENSMUST00000134167 - NO_TRANSLATION retained_intron ENSMUSG00000024968 Rcor2 ENSMUST00000113369 ENSMUSP00000108996 TRANSLATION protein_coding - - 1 479.0 0.0 4.8 2.1 86.0 0.0 -4,-5 0.2254 5 12.402 MINOR ENSMUSG00000024968 Rcor2 ENSMUST00000066646 ENSMUSP00000063335 TRANSLATION protein_coding - CCDS29522.2 1 523.0 0.0 4.8 9.2 86.0 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000024887 Asah2 ENSMUST00000096119 ENSMUSP00000093830 TRANSLATION protein_coding - CCDS29749.1 5 756.0 0.0 17.43 3.9 887.6 1.0 -1,-5 1.0 12 9.0 PRINCIPAL:4 ENSMUSG00000024887 Asah2 ENSMUST00000235395 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024887 Asah2 ENSMUST00000236030 ENSMUSP00000158185 TRANSLATION protein_coding - CCDS29749.1 - 756.0 0.0 17.43 3.9 887.6 1.0 -1,-5 1.0 12 9.0 PRINCIPAL:4 ENSMUSG00000024887 Asah2 ENSMUST00000237697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024887 Asah2 ENSMUST00000236122 - NO_TRANSLATION retained_intron ENSMUSG00000024887 Asah2 ENSMUST00000237104 ENSMUSP00000157424 TRANSLATION protein_coding - CCDS29749.1 - 756.0 0.0 17.43 3.9 887.6 1.0 -1,-5 1.0 12 9.0 PRINCIPAL:4 ENSMUSG00000024887 Asah2 ENSMUST00000236504 ENSMUSP00000157744 TRANSLATION protein_coding - CCDS29749.1 - 756.0 0.0 17.43 3.9 887.6 1.0 -1,-5 1.0 12 9.0 PRINCIPAL:4 ENSMUSG00000024887 Asah2 ENSMUST00000236208 ENSMUSP00000157392 TRANSLATION protein_coding stop - - 303.0 0.0 5.1 0.0 324.9 1.0 -1,-5 0.0026 7 -2.0 MINOR ENSMUSG00000024887 Asah2 ENSMUST00000235213 ENSMUSP00000158290 TRANSLATION protein_coding - - - 755.0 0.0 17.43 3.9 879.7 1.0 -1,-5 0.7974 12 9.0 ALTERNATIVE:2 ENSMUSG00000024887 Asah2 ENSMUST00000235273 ENSMUSP00000157557 TRANSLATION protein_coding - - - 468.0 0.0 9.18 0.0 513.2 1.0 -1,-5 0.006 8 0.0 MINOR ENSMUSG00000010097 Nxf1 ENSMUST00000184387 - NO_TRANSLATION retained_intron ENSMUSG00000010097 Nxf1 ENSMUST00000183898 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010097 Nxf1 ENSMUST00000184826 ENSMUSP00000139229 TRANSLATION protein_coding start - 5 89.0 0.0 2.58 0.0 92.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000010097 Nxf1 ENSMUST00000184970 ENSMUSP00000139124 TRANSLATION protein_coding - CCDS70930.1 1 418.0 0.0 7.05 0.0 131.4 0.0 -4,-5 0.0093 11 0.0 MINOR ENSMUSG00000010097 Nxf1 ENSMUST00000184808 - NO_TRANSLATION retained_intron ENSMUSG00000010097 Nxf1 ENSMUST00000185056 - NO_TRANSLATION retained_intron ENSMUSG00000010097 Nxf1 ENSMUST00000183939 ENSMUSP00000139351 TRANSLATION protein_coding - - 5 282.0 0.0 5.75 0.0 80.8 0.0 -4,-5 0.0 9 0.0 MINOR ENSMUSG00000010097 Nxf1 ENSMUST00000183780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010097 Nxf1 ENSMUST00000184756 ENSMUSP00000139050 TRANSLATION nonsense_mediated_decay - - 5 75.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000010097 Nxf1 ENSMUST00000010241 ENSMUSP00000010241 TRANSLATION protein_coding - CCDS29543.1 1 618.0 0.0 15.27 11.8 318.2 0.0 -4,-5 1.0 21 15.0 PRINCIPAL:1 ENSMUSG00000005986 Ankrd13d ENSMUST00000170283 ENSMUSP00000126349 TRANSLATION nonsense_mediated_decay start - 3 98.0 0.0 0.198 0.0 76.2 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000005986 Ankrd13d ENSMUST00000169653 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005986 Ankrd13d ENSMUST00000056888 ENSMUSP00000053783 TRANSLATION protein_coding - CCDS50351.1 1 605.0 0.0 2.5565 11.2 388.4 0.0 -4,-2 1.0 10 14.43 PRINCIPAL:1 ENSMUSG00000005986 Ankrd13d ENSMUST00000166031 ENSMUSP00000130505 TRANSLATION nonsense_mediated_decay start - 3 79.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000005986 Ankrd13d ENSMUST00000167215 ENSMUSP00000128037 TRANSLATION protein_coding - - 3 150.0 0.0 2.824 0.0 36.3 0.0 -4,-2 0.0305 2 6.0 MINOR ENSMUSG00000005986 Ankrd13d ENSMUST00000163858 ENSMUSP00000128932 TRANSLATION nonsense_mediated_decay - - 1 83.0 0.0 1.61 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000024827 Gldc ENSMUST00000235203 - NO_TRANSLATION retained_intron ENSMUSG00000024827 Gldc ENSMUST00000235189 - NO_TRANSLATION retained_intron ENSMUSG00000024827 Gldc ENSMUST00000025778 ENSMUSP00000025778 TRANSLATION protein_coding - CCDS37956.1 1 1025.0 12.0 22.6 6.6 704.0 0.0 -4,-1 1.0 17 20.0 PRINCIPAL:1 ENSMUSG00000024906 Mus81 ENSMUST00000149908 - NO_TRANSLATION retained_intron ENSMUSG00000024906 Mus81 ENSMUST00000147961 - NO_TRANSLATION retained_intron ENSMUSG00000024906 Mus81 ENSMUST00000124334 ENSMUSP00000114895 TRANSLATION protein_coding - CCDS29467.1 1 551.0 3.0 13.18 8.2 88.2 0.0 -4,-2 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000024906 Mus81 ENSMUST00000133436 ENSMUSP00000118580 TRANSLATION nonsense_mediated_decay start - 5 389.0 3.0 9.68 0.0 88.2 0.0 -4,0 0.0222 2 -2.0 MINOR ENSMUSG00000024906 Mus81 ENSMUST00000025841 ENSMUSP00000025841 TRANSLATION nonsense_mediated_decay - - 1 502.0 3.0 11.68 0.0 88.2 0.0 -4,-2 0.0247 2 -2.0 MINOR ENSMUSG00000024906 Mus81 ENSMUST00000144422 - NO_TRANSLATION retained_intron ENSMUSG00000024906 Mus81 ENSMUST00000126471 ENSMUSP00000121435 TRANSLATION nonsense_mediated_decay - - 5 97.0 0.0 1.33 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000024906 Mus81 ENSMUST00000237708 ENSMUSP00000158270 TRANSLATION protein_coding start - - 130.0 0.0 4.0 0.0 0.0 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000024906 Mus81 ENSMUST00000151932 - NO_TRANSLATION retained_intron ENSMUSG00000024906 Mus81 ENSMUST00000154215 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024906 Mus81 ENSMUST00000146661 - NO_TRANSLATION retained_intron ENSMUSG00000024906 Mus81 ENSMUST00000140365 - NO_TRANSLATION retained_intron ENSMUSG00000096708 Or5b119 ENSMUST00000080801 ENSMUSP00000079616 TRANSLATION protein_coding - CCDS29662.1 - 314.0 0.0 1.0 6.4 175.7 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000056078 Lipm ENSMUST00000025685 ENSMUSP00000025685 TRANSLATION protein_coding - CCDS50419.1 1 422.0 11.0 7.5 6.2 97.2 0.0 -1,-4 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000056078 Lipm ENSMUST00000237637 - NO_TRANSLATION retained_intron ENSMUSG00000056078 Lipm ENSMUST00000235239 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033863 Klf9 ENSMUST00000236357 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033863 Klf9 ENSMUST00000036884 ENSMUSP00000045639 TRANSLATION protein_coding - CCDS29706.1 1 244.0 12.0 1.2 11.4 67.2 0.0 -4,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000074733 Zfp950 ENSMUST00000143264 ENSMUSP00000145915 TRANSLATION protein_coding - CCDS84461.1 1 64.0 0.0 1.75 0.4 77.2 0.0 -4,-5 0.0167 - 0.0 MINOR ENSMUSG00000074733 Zfp950 ENSMUST00000148569 ENSMUSP00000145979 TRANSLATION protein_coding start - 5 63.0 0.0 1.75 0.4 77.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074733 Zfp950 ENSMUST00000205854 ENSMUSP00000145786 TRANSLATION protein_coding - CCDS84462.1 3 75.0 0.0 1.75 0.0 77.2 0.0 -4,-5 0.0167 - 0.0 MINOR ENSMUSG00000074733 Zfp950 ENSMUST00000180544 ENSMUSP00000146243 TRANSLATION protein_coding - CCDS84463.1 3 609.0 71.0 5.75 0.1 415.7 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000074733 Zfp950 ENSMUST00000127290 ENSMUSP00000145951 TRANSLATION nonsense_mediated_decay - - 1 77.0 0.0 1.75 0.0 77.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074733 Zfp950 ENSMUST00000178819 ENSMUSP00000145709 TRANSLATION protein_coding start/stop - - 57.0 8.0 1.0 0.0 46.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074733 Zfp950 ENSMUST00000205712 ENSMUSP00000145648 TRANSLATION nonsense_mediated_decay - - 5 124.0 5.0 3.05 0.0 77.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074733 Zfp950 ENSMUST00000122927 ENSMUSP00000146206 TRANSLATION nonsense_mediated_decay - - 1 86.0 0.0 1.75 0.0 77.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074733 Zfp950 ENSMUST00000181469 - NO_TRANSLATION retained_intron ENSMUSG00000074733 Zfp950 ENSMUST00000127117 ENSMUSP00000146094 TRANSLATION nonsense_mediated_decay - - 3 77.0 0.0 1.75 0.0 77.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025077 Dclre1a ENSMUST00000182059 ENSMUSP00000138364 TRANSLATION protein_coding - - 2 1029.0 6.0 7.0 0.1 123.5 0.0 -4,-5 0.9467 - 18.0 PRINCIPAL:1 ENSMUSG00000025077 Dclre1a ENSMUST00000183216 - NO_TRANSLATION retained_intron ENSMUSG00000025077 Dclre1a ENSMUST00000181992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025077 Dclre1a ENSMUST00000183143 ENSMUSP00000138537 TRANSLATION nonsense_mediated_decay - - 1 296.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000025077 Dclre1a ENSMUST00000182276 ENSMUSP00000138290 TRANSLATION protein_coding - - 1 1029.0 6.0 7.0 0.1 123.5 0.0 -4,-5 0.9467 - 18.0 PRINCIPAL:1 ENSMUSG00000025077 Dclre1a ENSMUST00000182058 - NO_TRANSLATION retained_intron ENSMUSG00000063796 Slc22a8 ENSMUST00000237904 - NO_TRANSLATION retained_intron ENSMUSG00000063796 Slc22a8 ENSMUST00000170817 ENSMUSP00000131045 TRANSLATION protein_coding - CCDS29537.1 5 537.0 0.0 5.198 0.1 108.1 10.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000063796 Slc22a8 ENSMUST00000010251 ENSMUSP00000010251 TRANSLATION protein_coding - CCDS29537.1 1 537.0 0.0 5.198 0.1 108.1 10.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000025224 Gbf1 ENSMUST00000176355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025224 Gbf1 ENSMUST00000177406 - NO_TRANSLATION retained_intron ENSMUSG00000025224 Gbf1 ENSMUST00000175868 - NO_TRANSLATION retained_intron ENSMUSG00000025224 Gbf1 ENSMUST00000176992 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025224 Gbf1 ENSMUST00000026254 ENSMUSP00000026254 TRANSLATION protein_coding - CCDS29873.1 1 1861.0 0.0 3.264 11.4 307.5 0.0 -4,-5 1.0 41 15.0 PRINCIPAL:1 ENSMUSG00000025224 Gbf1 ENSMUST00000176574 ENSMUSP00000159271 TRANSLATION protein_coding start/stop - 3 187.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000025224 Gbf1 ENSMUST00000176525 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025224 Gbf1 ENSMUST00000175878 - NO_TRANSLATION retained_intron ENSMUSG00000025224 Gbf1 ENSMUST00000176046 - NO_TRANSLATION retained_intron ENSMUSG00000025224 Gbf1 ENSMUST00000176853 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025224 Gbf1 ENSMUST00000176422 - NO_TRANSLATION retained_intron ENSMUSG00000025224 Gbf1 ENSMUST00000177512 ENSMUSP00000135850 TRANSLATION nonsense_mediated_decay start - 5 117.0 0.0 1.864 0.0 130.4 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000025224 Gbf1 ENSMUST00000176576 - NO_TRANSLATION retained_intron ENSMUSG00000025224 Gbf1 ENSMUST00000175706 - NO_TRANSLATION retained_intron ENSMUSG00000025224 Gbf1 ENSMUST00000175747 ENSMUSP00000134762 TRANSLATION nonsense_mediated_decay start - 5 163.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025224 Gbf1 ENSMUST00000236167 - NO_TRANSLATION retained_intron ENSMUSG00000024673 Ms4a1 ENSMUST00000185851 - NO_TRANSLATION retained_intron ENSMUSG00000024673 Ms4a1 ENSMUST00000187379 - NO_TRANSLATION retained_intron ENSMUSG00000024673 Ms4a1 ENSMUST00000169159 ENSMUSP00000126422 TRANSLATION protein_coding - CCDS37923.1 1 291.0 0.0 4.1 0.0 154.1 0.0 -4,-7 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000079415 Cntf ENSMUST00000112933 ENSMUSP00000108555 TRANSLATION protein_coding - CCDS29637.1 1 198.0 0.0 1.2 9.1 351.6 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000033478 Fhip2a ENSMUST00000036407 ENSMUSP00000048903 TRANSLATION protein_coding - CCDS29925.1 1 764.0 0.0 0.0 16.3 472.2 0.0 -4,-7 1.0 18 10.0 PRINCIPAL:1 ENSMUSG00000033478 Fhip2a ENSMUST00000237170 ENSMUSP00000157398 TRANSLATION nonsense_mediated_decay - - - 180.0 0.0 0.0 0.0 152.4 0.0 -4,-7 0.0001 4 -2.0 MINOR ENSMUSG00000033478 Fhip2a ENSMUST00000249616 ENSMUSP00000159825 TRANSLATION protein_coding - - - 796.0 0.0 0.0 0.0 472.2 0.0 -4,-2 0.1105 18 6.0 MINOR ENSMUSG00000054523 Ms4a5 ENSMUST00000188267 ENSMUSP00000139493 TRANSLATION nonsense_mediated_decay - - 5 100.0 0.0 0.6 0.0 40.4 1.0 -4,-7 0.0017 - -2.0 MINOR ENSMUSG00000054523 Ms4a5 ENSMUST00000188335 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054523 Ms4a5 ENSMUST00000191110 - NO_TRANSLATION retained_intron ENSMUSG00000054523 Ms4a5 ENSMUST00000067673 ENSMUSP00000066960 TRANSLATION protein_coding - CCDS29596.1 1 197.0 0.0 2.0 3.3 111.9 4.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000054523 Ms4a5 ENSMUST00000186937 ENSMUSP00000139805 TRANSLATION protein_coding - - 1 154.0 0.0 1.4 0.0 59.7 2.0 -4,-6 0.0013 - 7.068 MINOR ENSMUSG00000096320 Or5b116 ENSMUST00000213561 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096320 Or5b116 ENSMUST00000096203 ENSMUSP00000093917 TRANSLATION protein_coding - CCDS29659.1 - 314.0 0.0 1.0 6.4 179.0 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096320 Or5b116 ENSMUST00000217249 ENSMUSP00000150749 TRANSLATION protein_coding - CCDS29659.1 5 314.0 0.0 1.0 6.4 179.0 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000096320 Or5b116 ENSMUST00000213460 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096320 Or5b116 ENSMUST00000217482 ENSMUSP00000149948 TRANSLATION protein_coding - CCDS29659.1 5 314.0 0.0 1.0 6.4 179.0 6.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024885 Aldh3b1 ENSMUST00000237391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024885 Aldh3b1 ENSMUST00000051803 ENSMUSP00000056276 TRANSLATION protein_coding - CCDS29403.1 1 468.0 30.0 8.5 17.8 289.6 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000024732 Ccdc86 ENSMUST00000025639 ENSMUSP00000025639 TRANSLATION protein_coding - CCDS29593.1 1 426.0 0.0 2.75 0.0 53.6 0.0 -4,-2 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000024732 Ccdc86 ENSMUST00000189018 - NO_TRANSLATION retained_intron ENSMUSG00000024732 Ccdc86 ENSMUST00000133836 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038155 Gstp2 ENSMUST00000235657 ENSMUSP00000158235 TRANSLATION protein_coding stop - - 95.0 6.0 3.08 0.0 26.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038155 Gstp2 ENSMUST00000237565 - NO_TRANSLATION retained_intron ENSMUSG00000038155 Gstp2 ENSMUST00000237999 ENSMUSP00000158168 TRANSLATION protein_coding stop - - 84.0 6.0 2.75 0.0 26.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000038155 Gstp2 ENSMUST00000235381 ENSMUSP00000158159 TRANSLATION protein_coding stop - - 132.0 5.0 3.555 0.0 23.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000038155 Gstp2 ENSMUST00000042700 ENSMUSP00000038931 TRANSLATION protein_coding - CCDS29412.1 1 210.0 9.0 5.58 28.4 90.3 0.0 -4,-6 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000038155 Gstp2 ENSMUST00000237650 - NO_TRANSLATION retained_intron ENSMUSG00000025171 Ubtd1 ENSMUST00000026170 ENSMUSP00000026170 TRANSLATION protein_coding - CCDS29819.1 1 227.0 0.0 1.6 24.7 181.3 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000025171 Ubtd1 ENSMUST00000237817 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024999 Noc3l ENSMUST00000025963 ENSMUSP00000025963 TRANSLATION protein_coding - CCDS37974.1 1 807.0 0.0 2.4935 0.0 202.4 0.0 -4,-6 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000056858 Or9i1 ENSMUST00000074221 ENSMUSP00000073843 TRANSLATION protein_coding - CCDS29677.1 - 316.0 0.0 1.0 12.3 145.4 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024908 Ppp6r3 ENSMUST00000225624 ENSMUSP00000152970 TRANSLATION protein_coding start/stop - - 228.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 3 -2.0 MINOR ENSMUSG00000024908 Ppp6r3 ENSMUST00000113997 ENSMUSP00000109630 TRANSLATION protein_coding - CCDS50341.1 5 873.0 0.0 0.0 10.3 365.4 0.0 -4,-5 1.0 25 3.0 PRINCIPAL:4 ENSMUSG00000024908 Ppp6r3 ENSMUST00000172362 ENSMUSP00000131084 TRANSLATION protein_coding - CCDS50340.1 1 827.0 0.0 0.0 4.2 365.4 0.0 -4,-5 0.4463 25 1.032 MINOR ENSMUSG00000024908 Ppp6r3 ENSMUST00000226109 ENSMUSP00000153236 TRANSLATION protein_coding stop - - 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024908 Ppp6r3 ENSMUST00000225446 - NO_TRANSLATION retained_intron ENSMUSG00000024908 Ppp6r3 ENSMUST00000025846 ENSMUSP00000025846 TRANSLATION protein_coding - CCDS29397.1 1 844.0 0.0 0.0 9.6 365.4 0.0 -4,-5 0.9367 25 2.775 ALTERNATIVE:1 ENSMUSG00000024908 Ppp6r3 ENSMUST00000225339 - NO_TRANSLATION retained_intron ENSMUSG00000024908 Ppp6r3 ENSMUST00000225705 - NO_TRANSLATION retained_intron ENSMUSG00000024908 Ppp6r3 ENSMUST00000225475 ENSMUSP00000153575 TRANSLATION protein_coding start - - 252.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 5 -2.0 MINOR ENSMUSG00000024908 Ppp6r3 ENSMUST00000223919 - NO_TRANSLATION retained_intron ENSMUSG00000035173 Ccdc186 ENSMUST00000140705 - NO_TRANSLATION retained_intron ENSMUSG00000035173 Ccdc186 ENSMUST00000135666 ENSMUSP00000122539 TRANSLATION protein_coding start - 3 193.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0259 - -2.0 MINOR ENSMUSG00000035173 Ccdc186 ENSMUST00000156708 - NO_TRANSLATION retained_intron ENSMUSG00000035173 Ccdc186 ENSMUST00000076085 ENSMUSP00000075454 TRANSLATION protein_coding - CCDS29921.1 1 917.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.9474 10 0.0 PRINCIPAL:1 ENSMUSG00000035173 Ccdc186 ENSMUST00000118592 ENSMUSP00000113457 TRANSLATION protein_coding - CCDS29921.1 5 917.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.9474 10 0.0 PRINCIPAL:1 ENSMUSG00000035173 Ccdc186 ENSMUST00000140184 - NO_TRANSLATION retained_intron ENSMUSG00000024855 Pacs1 ENSMUST00000236470 - NO_TRANSLATION retained_intron ENSMUSG00000024855 Pacs1 ENSMUST00000236775 ENSMUSP00000158057 TRANSLATION nonsense_mediated_decay - - - 170.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024855 Pacs1 ENSMUST00000235130 - NO_TRANSLATION retained_intron ENSMUSG00000024855 Pacs1 ENSMUST00000236624 - NO_TRANSLATION retained_intron ENSMUSG00000024855 Pacs1 ENSMUST00000237463 ENSMUSP00000158335 TRANSLATION protein_coding stop - - 119.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000024855 Pacs1 ENSMUST00000025786 ENSMUSP00000025786 TRANSLATION protein_coding - CCDS29453.1 1 961.0 0.0 1.5 1.5 628.0 0.0 -4,-5 1.0 23 13.0 PRINCIPAL:1 ENSMUSG00000024855 Pacs1 ENSMUST00000237967 - NO_TRANSLATION retained_intron ENSMUSG00000024803 Ankrd1 ENSMUST00000025718 ENSMUSP00000025718 TRANSLATION protein_coding - - 1 315.0 0.0 6.18 16.1 93.1 0.0 -4,-5 0.8416 - 12.0 ALTERNATIVE:1 ENSMUSG00000024803 Ankrd1 ENSMUST00000237338 ENSMUSP00000158472 TRANSLATION nonsense_mediated_decay - - - 262.0 0.0 4.298 0.0 76.8 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000024803 Ankrd1 ENSMUST00000235941 ENSMUSP00000158281 TRANSLATION nonsense_mediated_decay - - - 202.0 0.0 2.2 0.0 26.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024803 Ankrd1 ENSMUST00000236579 ENSMUSP00000157975 TRANSLATION nonsense_mediated_decay - - - 285.0 0.0 5.18 0.0 95.2 0.0 -4,-5 0.0036 - -2.0 MINOR ENSMUSG00000024803 Ankrd1 ENSMUST00000237142 ENSMUSP00000157960 TRANSLATION protein_coding - CCDS29771.1 - 319.0 0.0 6.18 16.1 95.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:4 ENSMUSG00000024803 Ankrd1 ENSMUST00000235221 - NO_TRANSLATION retained_intron ENSMUSG00000032648 Pygm ENSMUST00000142755 - NO_TRANSLATION retained_intron ENSMUSG00000032648 Pygm ENSMUST00000139775 - NO_TRANSLATION retained_intron ENSMUSG00000032648 Pygm ENSMUST00000035269 ENSMUSP00000047564 TRANSLATION protein_coding - CCDS29504.1 1 842.0 61.0 18.83 33.9 1157.5 0.0 -4,-7 1.0 48 22.0 PRINCIPAL:1 ENSMUSG00000032648 Pygm ENSMUST00000113483 ENSMUSP00000109111 TRANSLATION protein_coding - - 5 754.0 52.0 16.33 1.7 1038.8 0.0 -4,-6 0.1043 48 1.086 MINOR ENSMUSG00000044994 Or4d10c ENSMUST00000217952 ENSMUSP00000151331 TRANSLATION protein_coding - CCDS29620.1 5 311.0 0.0 1.0 11.3 166.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044994 Or4d10c ENSMUST00000220005 ENSMUSP00000151988 TRANSLATION protein_coding - CCDS29620.1 5 311.0 0.0 1.0 11.3 166.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044994 Or4d10c ENSMUST00000208703 ENSMUSP00000146619 TRANSLATION protein_coding - CCDS29620.1 2 311.0 0.0 1.0 11.3 166.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044994 Or4d10c ENSMUST00000219005 ENSMUSP00000151226 TRANSLATION protein_coding - CCDS29620.1 5 311.0 0.0 1.0 11.3 166.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044994 Or4d10c ENSMUST00000219996 ENSMUSP00000151454 TRANSLATION protein_coding - CCDS29620.1 5 311.0 0.0 1.0 11.3 166.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044994 Or4d10c ENSMUST00000219155 ENSMUSP00000151635 TRANSLATION protein_coding - CCDS29620.1 5 311.0 0.0 1.0 11.3 166.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000044994 Or4d10c ENSMUST00000112952 ENSMUSP00000108575 TRANSLATION protein_coding - CCDS29620.1 1 311.0 0.0 1.0 11.3 166.9 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000011752 Pgam1 ENSMUST00000235468 - NO_TRANSLATION retained_intron ENSMUSG00000011752 Pgam1 ENSMUST00000237510 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000011752 Pgam1 ENSMUST00000011896 ENSMUSP00000011896 TRANSLATION protein_coding - CCDS29815.1 1 254.0 13.0 4.0 34.9 0.0 0.0 -4,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000024914 Drap1 ENSMUST00000127043 - NO_TRANSLATION retained_intron ENSMUSG00000024914 Drap1 ENSMUST00000113673 ENSMUSP00000109303 TRANSLATION protein_coding - - 2 162.0 0.0 2.5 0.0 47.1 0.0 -4,-5 0.0016 4 5.406 MINOR ENSMUSG00000024914 Drap1 ENSMUST00000126908 - NO_TRANSLATION retained_intron ENSMUSG00000024914 Drap1 ENSMUST00000025853 ENSMUSP00000025853 TRANSLATION protein_coding - CCDS29462.1 1 205.0 0.0 3.13 6.3 68.9 0.0 -4,-6 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000024914 Drap1 ENSMUST00000113674 ENSMUSP00000109304 TRANSLATION protein_coding - CCDS70919.1 2 212.0 0.0 3.13 5.4 68.9 0.0 -4,-6 0.9077 6 9.66 ALTERNATIVE:1 ENSMUSG00000024914 Drap1 ENSMUST00000134697 - NO_TRANSLATION retained_intron ENSMUSG00000024914 Drap1 ENSMUST00000136579 ENSMUSP00000133692 TRANSLATION protein_coding - - 2 185.0 0.0 2.5 3.0 47.1 0.0 -4,-5 0.2265 4 6.16 MINOR ENSMUSG00000024914 Drap1 ENSMUST00000148219 ENSMUSP00000121162 TRANSLATION protein_coding - - 3 182.0 0.0 3.13 0.0 68.9 0.0 -4,-6 0.0092 6 8.0 MINOR ENSMUSG00000024914 Drap1 ENSMUST00000125468 - NO_TRANSLATION retained_intron ENSMUSG00000024914 Drap1 ENSMUST00000124478 - NO_TRANSLATION retained_intron ENSMUSG00000056629 Fkbp2 ENSMUST00000177752 ENSMUSP00000136438 TRANSLATION protein_coding - CCDS29515.1 1 140.0 0.0 3.43 12.3 119.2 0.0 3,-2 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000056629 Fkbp2 ENSMUST00000070878 ENSMUSP00000066839 TRANSLATION protein_coding - CCDS29515.1 1 140.0 0.0 3.43 12.3 119.2 0.0 3,-2 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000056629 Fkbp2 ENSMUST00000238181 ENSMUSP00000158226 TRANSLATION protein_coding - - - 266.0 0.0 0.0 2.2 0.0 0.0 -4,-7 0.0723 2 0.318 MINOR ENSMUSG00000056629 Fkbp2 ENSMUST00000237119 ENSMUSP00000157679 TRANSLATION nonsense_mediated_decay - - - 229.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0007 - -2.0 MINOR ENSMUSG00000041035 Dpcd ENSMUST00000235584 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041035 Dpcd ENSMUST00000161373 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041035 Dpcd ENSMUST00000237600 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041035 Dpcd ENSMUST00000235805 ENSMUSP00000158295 TRANSLATION nonsense_mediated_decay - - - 81.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041035 Dpcd ENSMUST00000047057 ENSMUSP00000045683 TRANSLATION protein_coding - CCDS29862.1 1 203.0 0.0 0.0 36.9 296.4 0.0 -4,-5 1.0 4 10.0 PRINCIPAL:1 ENSMUSG00000034616 Ssh3 ENSMUST00000235563 - NO_TRANSLATION retained_intron ENSMUSG00000034616 Ssh3 ENSMUST00000237790 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034616 Ssh3 ENSMUST00000235685 ENSMUSP00000157591 TRANSLATION nonsense_mediated_decay start - - 138.0 0.0 1.85 0.0 63.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000034616 Ssh3 ENSMUST00000236440 - NO_TRANSLATION retained_intron ENSMUSG00000034616 Ssh3 ENSMUST00000113852 ENSMUSP00000109483 TRANSLATION protein_coding - - 1 648.0 7.0 3.45 1.5 157.9 0.0 -4,-1 0.7089 6 15.0 ALTERNATIVE:2 ENSMUSG00000034616 Ssh3 ENSMUST00000237718 - NO_TRANSLATION retained_intron ENSMUSG00000034616 Ssh3 ENSMUST00000236721 - NO_TRANSLATION retained_intron ENSMUSG00000034616 Ssh3 ENSMUST00000235731 - NO_TRANSLATION retained_intron ENSMUSG00000034616 Ssh3 ENSMUST00000235815 - NO_TRANSLATION retained_intron ENSMUSG00000034616 Ssh3 ENSMUST00000037992 ENSMUSP00000047718 TRANSLATION protein_coding - CCDS29425.1 1 649.0 7.0 3.45 1.5 157.9 0.0 -4,-2 1.0 6 15.0 PRINCIPAL:2 ENSMUSG00000034616 Ssh3 ENSMUST00000237501 ENSMUSP00000158089 TRANSLATION nonsense_mediated_decay - - - 52.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000034616 Ssh3 ENSMUST00000237670 ENSMUSP00000158396 TRANSLATION protein_coding start/stop - - 242.0 0.0 0.7 0.0 50.9 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000034616 Ssh3 ENSMUST00000236794 ENSMUSP00000158486 TRANSLATION protein_coding - - - 653.0 7.0 3.45 0.1 157.9 0.0 -4,-2 0.2567 6 14.0 ALTERNATIVE:2 ENSMUSG00000024983 Vti1a ENSMUST00000095950 ENSMUSP00000093644 TRANSLATION protein_coding - CCDS29910.1 1 217.0 0.0 5.53 32.9 167.0 1.0 -4,-5 1.0 4 12.0 PRINCIPAL:3 ENSMUSG00000024983 Vti1a ENSMUST00000225051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024983 Vti1a ENSMUST00000225529 ENSMUSP00000153392 TRANSLATION protein_coding - - - 197.0 0.0 5.05 5.5 167.0 0.0 -4,-5 0.1997 4 7.604 MINOR ENSMUSG00000024983 Vti1a ENSMUST00000226069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024983 Vti1a ENSMUST00000225392 - NO_TRANSLATION retained_intron ENSMUSG00000024983 Vti1a ENSMUST00000224396 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024983 Vti1a ENSMUST00000223690 ENSMUSP00000153629 TRANSLATION protein_coding - - - 224.0 0.0 5.53 32.9 167.0 1.0 -4,-5 0.8168 3 12.0 ALTERNATIVE:1 ENSMUSG00000109520 Or10w3 ENSMUST00000208667 ENSMUSP00000146547 TRANSLATION protein_coding - - 5 316.0 0.0 1.0 7.8 165.8 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000109520 Or10w3 ENSMUST00000207208 ENSMUSP00000146561 TRANSLATION protein_coding - - 5 316.0 0.0 1.0 7.8 165.8 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000067656 Slc22a27 ENSMUST00000075619 ENSMUSP00000093991 TRANSLATION protein_coding - CCDS50380.1 1 551.0 0.0 4.928 5.5 83.8 14.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000067656 Slc22a27 ENSMUST00000182102 ENSMUSP00000138475 TRANSLATION protein_coding - - 1 443.0 0.0 3.928 0.9 40.0 10.0 -4,-7 0.0254 - 6.864 MINOR ENSMUSG00000024829 Mrpl21 ENSMUST00000141610 ENSMUSP00000120330 TRANSLATION nonsense_mediated_decay - - 3 53.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000024829 Mrpl21 ENSMUST00000025743 ENSMUSP00000025743 TRANSLATION protein_coding - CCDS84406.1 1 209.0 0.0 4.0 5.7 82.1 0.0 -2,2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000024829 Mrpl21 ENSMUST00000154785 - NO_TRANSLATION retained_intron ENSMUSG00000024829 Mrpl21 ENSMUST00000025745 ENSMUSP00000025745 TRANSLATION protein_coding - CCDS29394.1 1 216.0 0.0 3.25 0.0 72.4 0.0 -2,2 0.0511 2 9.792 MINOR ENSMUSG00000024829 Mrpl21 ENSMUST00000139844 - NO_TRANSLATION retained_intron ENSMUSG00000024829 Mrpl21 ENSMUST00000155870 - NO_TRANSLATION retained_intron ENSMUSG00000037578 Pkd2l1 ENSMUST00000042026 ENSMUSP00000045675 TRANSLATION protein_coding - CCDS29846.1 1 760.0 4.0 11.4 0.4 567.2 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000037578 Pkd2l1 ENSMUST00000161357 - NO_TRANSLATION retained_intron ENSMUSG00000024727 Trpm6 ENSMUST00000040489 ENSMUSP00000037443 TRANSLATION protein_coding - CCDS29691.1 1 2028.0 18.0 16.93 0.4 267.0 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000024727 Trpm6 ENSMUST00000236199 ENSMUSP00000157823 TRANSLATION nonsense_mediated_decay - - - 894.0 0.0 7.23 0.0 0.0 0.0 -4,-5 0.0051 - -2.0 MINOR ENSMUSG00000024727 Trpm6 ENSMUST00000237623 - NO_TRANSLATION retained_intron ENSMUSG00000024727 Trpm6 ENSMUST00000237020 ENSMUSP00000158233 TRANSLATION protein_coding stop - - 525.0 0.0 0.0 0.0 64.2 0.0 -4,-5 0.0039 - -2.0 MINOR ENSMUSG00000118346 Tmem179b ENSMUST00000235756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000118346 Tmem179b ENSMUST00000010249 ENSMUSP00000010249 TRANSLATION protein_coding - CCDS29545.1 1 219.0 0.0 5.5 6.7 0.0 0.0 2,-3 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000118346 Tmem179b ENSMUST00000237634 ENSMUSP00000158384 TRANSLATION nonsense_mediated_decay - - - 74.0 0.0 1.0 0.0 0.0 0.0 2,-3 0.0548 - -2.0 MINOR ENSMUSG00000001750 Tcirg1 ENSMUST00000134698 - NO_TRANSLATION retained_intron ENSMUSG00000001750 Tcirg1 ENSMUST00000131327 - NO_TRANSLATION retained_intron ENSMUSG00000001750 Tcirg1 ENSMUST00000125792 - NO_TRANSLATION retained_intron ENSMUSG00000001750 Tcirg1 ENSMUST00000135070 ENSMUSP00000121241 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 1.0 0.0 0.0 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000001750 Tcirg1 ENSMUST00000162688 - NO_TRANSLATION retained_intron ENSMUSG00000001750 Tcirg1 ENSMUST00000127308 - NO_TRANSLATION retained_intron ENSMUSG00000001750 Tcirg1 ENSMUST00000132164 ENSMUSP00000120968 TRANSLATION nonsense_mediated_decay start - 5 191.0 0.0 2.505 0.0 158.8 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000001750 Tcirg1 ENSMUST00000126643 - NO_TRANSLATION retained_intron ENSMUSG00000001750 Tcirg1 ENSMUST00000145791 ENSMUSP00000122474 TRANSLATION protein_coding - CCDS29401.1 1 834.0 0.0 14.705 4.3 946.9 6.0 -1,-4 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000001750 Tcirg1 ENSMUST00000001801 ENSMUSP00000001801 TRANSLATION protein_coding - CCDS29401.1 1 834.0 0.0 14.705 4.3 946.9 6.0 -1,-4 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000001750 Tcirg1 ENSMUST00000159824 - NO_TRANSLATION retained_intron ENSMUSG00000001750 Tcirg1 ENSMUST00000122885 ENSMUSP00000114768 TRANSLATION nonsense_mediated_decay start - 5 91.0 0.0 2.5 0.0 143.8 2.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000001750 Tcirg1 ENSMUST00000236590 ENSMUSP00000157575 TRANSLATION protein_coding stop - - 65.0 0.0 2.08 0.0 41.1 0.0 -1,-4 0.0 1 -2.0 MINOR ENSMUSG00000001750 Tcirg1 ENSMUST00000126070 ENSMUSP00000120531 TRANSLATION protein_coding - CCDS29401.1 1 834.0 0.0 14.705 4.3 946.9 6.0 -1,-4 1.0 11 14.0 PRINCIPAL:1 ENSMUSG00000042729 Wdr74 ENSMUST00000237673 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042729 Wdr74 ENSMUST00000236946 - NO_TRANSLATION retained_intron ENSMUSG00000042729 Wdr74 ENSMUST00000237531 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042729 Wdr74 ENSMUST00000210592 - NO_TRANSLATION retained_intron ENSMUSG00000042729 Wdr74 ENSMUST00000210512 ENSMUSP00000147765 TRANSLATION protein_coding - - 1 340.0 0.0 6.1 0.1 13.7 0.0 -4,-7 0.0493 8 10.002 MINOR ENSMUSG00000042729 Wdr74 ENSMUST00000049424 ENSMUSP00000043315 TRANSLATION protein_coding - CCDS29541.1 1 384.0 0.0 7.1 7.6 13.7 0.0 -4,-7 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000042729 Wdr74 ENSMUST00000238116 - NO_TRANSLATION retained_intron ENSMUSG00000042729 Wdr74 ENSMUST00000237017 - NO_TRANSLATION retained_intron ENSMUSG00000025049 Taf5 ENSMUST00000026027 ENSMUSP00000026027 TRANSLATION protein_coding - CCDS29886.1 1 801.0 3.0 9.1 6.6 361.4 0.0 -4,-5 1.0 11 17.0 PRINCIPAL:1 ENSMUSG00000037349 Nudt22 ENSMUST00000180765 ENSMUSP00000137738 TRANSLATION protein_coding - CCDS29517.1 5 308.0 0.0 5.0 0.4 0.0 0.0 -2,-3 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000037349 Nudt22 ENSMUST00000041686 ENSMUSP00000041419 TRANSLATION protein_coding - CCDS29517.1 1 308.0 0.0 5.0 0.4 0.0 0.0 -2,-3 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000037349 Nudt22 ENSMUST00000180762 - NO_TRANSLATION retained_intron ENSMUSG00000024947 Men1 ENSMUST00000113503 ENSMUSP00000109131 TRANSLATION protein_coding - - 5 616.0 0.0 10.73 8.4 914.6 0.0 -4,-7 0.7542 10 8.643 ALTERNATIVE:1 ENSMUSG00000024947 Men1 ENSMUST00000170132 ENSMUSP00000126655 TRANSLATION protein_coding start/stop - 3 135.0 0.0 3.33 0.0 251.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024947 Men1 ENSMUST00000079327 ENSMUSP00000078306 TRANSLATION protein_coding - CCDS29502.1 1 611.0 0.0 10.73 9.4 923.8 0.0 -4,-7 1.0 10 9.0 PRINCIPAL:4 ENSMUSG00000024947 Men1 ENSMUST00000113500 ENSMUSP00000109128 TRANSLATION protein_coding - CCDS29502.1 5 611.0 0.0 10.73 9.4 923.8 0.0 -4,-7 1.0 10 9.0 PRINCIPAL:4 ENSMUSG00000024947 Men1 ENSMUST00000156154 - NO_TRANSLATION retained_intron ENSMUSG00000024947 Men1 ENSMUST00000113501 ENSMUSP00000109129 TRANSLATION protein_coding - - 5 576.0 0.0 9.65 1.0 819.8 0.0 -4,-7 0.0593 9 3.84 MINOR ENSMUSG00000024947 Men1 ENSMUST00000166909 ENSMUSP00000133085 TRANSLATION protein_coding - - 3 64.0 0.0 1.4 0.0 66.3 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000024947 Men1 ENSMUST00000056391 ENSMUSP00000058149 TRANSLATION protein_coding - CCDS29502.1 1 611.0 0.0 10.73 9.4 923.8 0.0 -4,-7 1.0 10 9.0 PRINCIPAL:4 ENSMUSG00000024947 Men1 ENSMUST00000113502 ENSMUSP00000109130 TRANSLATION protein_coding - CCDS50366.1 1 617.0 0.0 10.73 8.1 923.8 0.0 -4,-7 0.9226 10 8.535 ALTERNATIVE:1 ENSMUSG00000024947 Men1 ENSMUST00000113504 ENSMUSP00000109132 TRANSLATION protein_coding - CCDS29502.1 1 611.0 0.0 10.73 9.4 923.8 0.0 -4,-7 1.0 10 9.0 PRINCIPAL:4 ENSMUSG00000024947 Men1 ENSMUST00000237909 ENSMUSP00000158389 TRANSLATION protein_coding stop - - 88.0 0.0 2.0 0.0 68.9 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024947 Men1 ENSMUST00000238038 - NO_TRANSLATION retained_intron ENSMUSG00000024947 Men1 ENSMUST00000078137 ENSMUSP00000077272 TRANSLATION protein_coding - CCDS50367.1 1 556.0 0.0 9.93 1.0 771.6 0.0 -4,-7 0.0647 9 4.398 MINOR ENSMUSG00000024947 Men1 ENSMUST00000170292 ENSMUSP00000128607 TRANSLATION nonsense_mediated_decay start - 3 108.0 0.0 0.6 0.0 88.2 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000067522 Or5a1 ENSMUST00000216205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067522 Or5a1 ENSMUST00000214676 ENSMUSP00000149014 TRANSLATION protein_coding - CCDS29623.1 5 317.0 0.0 1.0 10.3 181.2 9.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067522 Or5a1 ENSMUST00000213471 ENSMUSP00000154269 TRANSLATION protein_coding - - 5 329.0 0.0 1.0 0.0 181.2 9.0 -4,-7 0.1011 - 12.0 MINOR ENSMUSG00000067522 Or5a1 ENSMUST00000087822 ENSMUSP00000085124 TRANSLATION protein_coding - CCDS29623.1 - 317.0 0.0 1.0 10.3 181.2 9.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071649 B3gat3 ENSMUST00000096243 ENSMUSP00000093962 TRANSLATION protein_coding - CCDS29558.1 1 335.0 20.0 3.9 9.5 231.9 0.0 -1,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000071649 B3gat3 ENSMUST00000237071 ENSMUSP00000157531 TRANSLATION nonsense_mediated_decay - - - 229.0 3.0 0.2 0.0 0.0 0.0 -1,-5 0.0 2 -2.0 MINOR ENSMUSG00000071649 B3gat3 ENSMUST00000235193 - NO_TRANSLATION retained_intron ENSMUSG00000015176 Nolc1 ENSMUST00000224490 ENSMUSP00000153641 TRANSLATION nonsense_mediated_decay start - - 36.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000015176 Nolc1 ENSMUST00000224434 - NO_TRANSLATION retained_intron ENSMUSG00000015176 Nolc1 ENSMUST00000223741 ENSMUSP00000152921 TRANSLATION protein_coding stop - - 197.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 2 -2.0 MINOR ENSMUSG00000015176 Nolc1 ENSMUST00000165017 ENSMUSP00000128331 TRANSLATION protein_coding - CCDS38006.1 1 702.0 0.0 0.0 0.0 100.1 0.0 -4,-2 1.0 10 2.0 PRINCIPAL:2 ENSMUSG00000015176 Nolc1 ENSMUST00000225780 ENSMUSP00000153545 TRANSLATION protein_coding - - - 701.0 0.0 0.0 0.0 100.1 0.0 -4,-2 0.6306 10 2.0 ALTERNATIVE:2 ENSMUSG00000015176 Nolc1 ENSMUST00000225758 - NO_TRANSLATION retained_intron ENSMUSG00000015176 Nolc1 ENSMUST00000223728 ENSMUSP00000153329 TRANSLATION protein_coding - - - 700.0 0.0 0.0 0.0 100.1 0.0 -4,-2 0.3734 10 2.0 ALTERNATIVE:2 ENSMUSG00000015176 Nolc1 ENSMUST00000223683 ENSMUSP00000153600 TRANSLATION protein_coding start - - 702.0 0.0 0.0 0.0 100.1 0.0 -4,-7 0.6979 10 -2.0 MINOR ENSMUSG00000015176 Nolc1 ENSMUST00000235620 ENSMUSP00000157687 TRANSLATION protein_coding - CCDS38006.1 - 702.0 0.0 0.0 0.0 100.1 0.0 -4,-2 1.0 10 2.0 PRINCIPAL:2 ENSMUSG00000024969 Mark2 ENSMUST00000171721 ENSMUSP00000129506 TRANSLATION protein_coding start - 5 776.0 18.0 11.945 0.0 355.5 0.0 -4,-5 0.0538 23 -2.0 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000171393 ENSMUSP00000129894 TRANSLATION protein_coding stop - 3 193.0 18.0 5.66 0.0 197.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000165286 ENSMUSP00000126468 TRANSLATION protein_coding - - 5 716.0 18.0 11.945 5.8 355.5 0.0 -4,-5 0.7318 22 15.617 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000171044 - NO_TRANSLATION retained_intron ENSMUSG00000024969 Mark2 ENSMUST00000164129 ENSMUSP00000129067 TRANSLATION nonsense_mediated_decay start - 3 54.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000169541 ENSMUSP00000128779 TRANSLATION protein_coding stop - 5 110.0 8.0 2.825 0.0 43.2 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000171352 ENSMUSP00000129490 TRANSLATION protein_coding start - 1 204.0 0.0 0.12 0.0 0.0 0.0 -4,-2 0.0 8 -2.0 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000025921 ENSMUSP00000025921 TRANSLATION protein_coding - CCDS37905.1 1 743.0 18.0 11.78 7.2 355.5 0.0 -4,-7 0.8239 22 15.761 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000168852 - NO_TRANSLATION retained_intron ENSMUSG00000024969 Mark2 ENSMUST00000170768 - NO_TRANSLATION retained_intron ENSMUSG00000024969 Mark2 ENSMUST00000167767 ENSMUSP00000132482 TRANSLATION protein_coding start/stop - 3 266.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000164205 ENSMUSP00000127827 TRANSLATION protein_coding - CCDS50378.1 1 722.0 18.0 11.945 9.9 355.5 0.0 -4,-5 1.0 22 17.0 ALTERNATIVE:1 ENSMUSG00000024969 Mark2 ENSMUST00000032557 ENSMUSP00000032557 TRANSLATION protein_coding - CCDS37903.1 1 731.0 18.0 11.945 7.8 355.5 0.0 -4,-5 0.9203 22 16.292 ALTERNATIVE:1 ENSMUSG00000024969 Mark2 ENSMUST00000166461 ENSMUSP00000128549 TRANSLATION protein_coding start - 3 307.0 0.0 2.0 0.0 74.5 0.0 -4,-1 0.0009 8 -2.0 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000165881 ENSMUSP00000126753 TRANSLATION protein_coding start/stop - 5 303.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.002 8 -2.0 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000165965 ENSMUSP00000131684 TRANSLATION protein_coding - CCDS37904.1 1 776.0 18.0 11.945 8.9 355.5 0.0 -4,-5 0.9112 24 16.664 PRINCIPAL:3 ENSMUSG00000024969 Mark2 ENSMUST00000163345 ENSMUSP00000125944 TRANSLATION protein_coding start/stop - 3 174.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 3 -2.0 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000168872 ENSMUSP00000128560 TRANSLATION protein_coding - - 5 707.0 18.0 11.945 7.0 355.5 0.0 -4,-5 0.7592 22 16.022 ALTERNATIVE:1 ENSMUSG00000024969 Mark2 ENSMUST00000168324 ENSMUSP00000131266 TRANSLATION protein_coding stop - 3 24.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024969 Mark2 ENSMUST00000165989 ENSMUSP00000129924 TRANSLATION protein_coding stop - 3 89.0 8.0 1.995 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000033053 Cfap95 ENSMUST00000035849 ENSMUSP00000048680 TRANSLATION protein_coding - CCDS29708.1 1 228.0 0.0 0.0 5.9 287.0 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000051490 Foxd4 ENSMUST00000058600 ENSMUSP00000058575 TRANSLATION protein_coding - CCDS29715.1 - 444.0 0.0 0.4 0.0 125.5 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024841 Eif1ad ENSMUST00000025759 ENSMUSP00000025759 TRANSLATION protein_coding - CCDS29459.1 1 170.0 0.0 3.25 0.0 66.8 0.0 -4,-7 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000024841 Eif1ad ENSMUST00000235664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024841 Eif1ad ENSMUST00000236059 - NO_TRANSLATION retained_intron ENSMUSG00000044724 Gpr152 ENSMUST00000096338 ENSMUSP00000094062 TRANSLATION protein_coding - CCDS29417.1 1 511.0 0.0 0.2 0.1 63.7 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045030 Or5b95 ENSMUST00000215134 ENSMUSP00000150063 TRANSLATION protein_coding - CCDS29635.1 5 312.0 0.0 1.0 12.5 169.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045030 Or5b95 ENSMUST00000049724 ENSMUSP00000059886 TRANSLATION protein_coding - CCDS29635.1 1 312.0 0.0 1.0 12.5 169.9 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045030 Or5b95 ENSMUST00000213486 ENSMUSP00000148908 TRANSLATION nonsense_mediated_decay - CCDS29635.1 5 312.0 0.0 1.0 12.5 169.9 5.0 -4,-6 1.0 - -2.0 MINOR ENSMUSG00000024974 Smc3 ENSMUST00000157053 - NO_TRANSLATION retained_intron ENSMUSG00000024974 Smc3 ENSMUST00000171083 - NO_TRANSLATION retained_intron ENSMUSG00000024974 Smc3 ENSMUST00000025930 ENSMUSP00000025930 TRANSLATION protein_coding - CCDS38025.1 1 1217.0 15.0 17.63 35.5 287.3 0.0 -4,-6 1.0 45 22.0 PRINCIPAL:1 ENSMUSG00000024922 Ovol1 ENSMUST00000025861 ENSMUSP00000025861 TRANSLATION protein_coding - CCDS29469.1 1 267.0 14.0 1.8 10.9 61.2 0.0 -4,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000024922 Ovol1 ENSMUST00000238060 ENSMUSP00000158183 TRANSLATION protein_coding stop - - 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000047731 Wbp1l ENSMUST00000138302 ENSMUSP00000117929 TRANSLATION protein_coding - CCDS29881.2 1 369.0 0.0 1.0 1.6 152.7 1.0 4,-1 1.0 3 9.0 PRINCIPAL:2 ENSMUSG00000047731 Wbp1l ENSMUST00000175937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047731 Wbp1l ENSMUST00000111855 ENSMUSP00000107486 TRANSLATION protein_coding - CCDS50457.1 1 348.0 0.0 1.0 1.6 152.7 1.0 -4,-7 0.6473 3 9.0 ALTERNATIVE:2 ENSMUSG00000047731 Wbp1l ENSMUST00000156649 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047731 Wbp1l ENSMUST00000099376 ENSMUSP00000096975 TRANSLATION protein_coding - CCDS50456.1 1 385.0 0.0 1.0 0.0 152.7 1.0 4,2 0.4846 3 8.0 ALTERNATIVE:2 ENSMUSG00000047731 Wbp1l ENSMUST00000132202 ENSMUSP00000121821 TRANSLATION nonsense_mediated_decay - - 1 94.0 0.0 0.0 0.0 34.3 0.0 4,-1 0.0027 - -2.0 MINOR ENSMUSG00000024800 Rpp30 ENSMUST00000025714 ENSMUSP00000025714 TRANSLATION protein_coding - CCDS29770.1 1 268.0 0.0 7.63 26.0 210.5 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000024800 Rpp30 ENSMUST00000236197 - NO_TRANSLATION retained_intron ENSMUSG00000024800 Rpp30 ENSMUST00000237251 - NO_TRANSLATION retained_intron ENSMUSG00000024800 Rpp30 ENSMUST00000235223 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024800 Rpp30 ENSMUST00000237841 - NO_TRANSLATION retained_intron ENSMUSG00000024780 Cdc37l1 ENSMUST00000225310 ENSMUSP00000153192 TRANSLATION protein_coding - - - 307.0 0.0 3.75 2.3 78.8 0.0 -4,-5 0.2285 4 12.378 MINOR ENSMUSG00000024780 Cdc37l1 ENSMUST00000224599 ENSMUSP00000152901 TRANSLATION protein_coding - - - 263.0 0.0 3.25 0.0 66.8 0.0 -4,-5 0.0003 4 10.086 MINOR ENSMUSG00000024780 Cdc37l1 ENSMUST00000224092 ENSMUSP00000153067 TRANSLATION protein_coding start - - 113.0 0.0 2.0 0.0 28.4 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024780 Cdc37l1 ENSMUST00000225210 ENSMUSP00000153424 TRANSLATION protein_coding - - - 310.0 0.0 3.75 0.0 78.8 0.0 -4,-5 0.0172 4 12.0 MINOR ENSMUSG00000024780 Cdc37l1 ENSMUST00000223694 ENSMUSP00000153292 TRANSLATION nonsense_mediated_decay start - - 56.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024780 Cdc37l1 ENSMUST00000224830 ENSMUSP00000153415 TRANSLATION protein_coding start - - 63.0 0.0 0.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024780 Cdc37l1 ENSMUST00000225598 - NO_TRANSLATION retained_intron ENSMUSG00000024780 Cdc37l1 ENSMUST00000224511 ENSMUSP00000152985 TRANSLATION protein_coding - - - 312.0 0.0 3.75 0.0 78.8 0.0 -4,-5 0.0172 4 12.0 MINOR ENSMUSG00000024780 Cdc37l1 ENSMUST00000050148 ENSMUSP00000060421 TRANSLATION protein_coding - CCDS29729.1 1 335.0 0.0 3.75 11.3 78.8 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000024792 Zfpl1 ENSMUST00000160712 ENSMUSP00000125085 TRANSLATION protein_coding stop - 2 182.0 7.0 0.0 0.0 0.0 0.0 -4,-7 0.0191 4 -2.0 MINOR ENSMUSG00000024792 Zfpl1 ENSMUST00000160357 - NO_TRANSLATION retained_intron ENSMUSG00000024792 Zfpl1 ENSMUST00000159859 ENSMUSP00000124857 TRANSLATION protein_coding stop - 3 129.0 7.0 0.0 0.0 0.0 0.0 -4,-7 0.0175 4 -2.0 MINOR ENSMUSG00000024792 Zfpl1 ENSMUST00000161548 ENSMUSP00000125459 TRANSLATION protein_coding stop - 5 242.0 7.0 0.0 0.0 0.0 0.0 -4,-7 0.0326 5 -2.0 MINOR ENSMUSG00000024792 Zfpl1 ENSMUST00000160444 - NO_TRANSLATION retained_intron ENSMUSG00000024792 Zfpl1 ENSMUST00000025707 ENSMUSP00000025707 TRANSLATION protein_coding - CCDS29492.1 1 310.0 7.0 0.0 11.0 0.0 1.0 -4,-7 1.0 6 9.0 PRINCIPAL:4 ENSMUSG00000024792 Zfpl1 ENSMUST00000160131 - NO_TRANSLATION retained_intron ENSMUSG00000024792 Zfpl1 ENSMUST00000160448 ENSMUSP00000124799 TRANSLATION nonsense_mediated_decay - - 3 80.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0159 - -2.0 MINOR ENSMUSG00000024792 Zfpl1 ENSMUST00000160977 ENSMUSP00000125176 TRANSLATION protein_coding stop - 5 264.0 7.0 0.0 0.0 0.0 0.0 -4,-7 0.033 5 -2.0 MINOR ENSMUSG00000024792 Zfpl1 ENSMUST00000237738 ENSMUSP00000157864 TRANSLATION protein_coding - - - 306.0 7.0 0.0 11.0 0.0 1.0 -4,-7 0.8485 6 9.0 ALTERNATIVE:1 ENSMUSG00000036961 Wnt8b ENSMUST00000237970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036961 Wnt8b ENSMUST00000041163 ENSMUSP00000042867 TRANSLATION protein_coding - CCDS50446.1 1 368.0 0.0 4.13 1.5 320.6 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000024847 Aip ENSMUST00000236509 - NO_TRANSLATION retained_intron ENSMUSG00000024847 Aip ENSMUST00000136043 - NO_TRANSLATION retained_intron ENSMUSG00000024847 Aip ENSMUST00000117831 ENSMUSP00000113807 TRANSLATION protein_coding - CCDS29415.1 1 330.0 0.0 6.5 19.2 38.3 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000024847 Aip ENSMUST00000121402 ENSMUSP00000114096 TRANSLATION protein_coding stop - 3 172.0 0.0 3.5 0.0 38.3 0.0 -4,-5 0.0008 7 -2.0 MINOR ENSMUSG00000024847 Aip ENSMUST00000025767 ENSMUSP00000025767 TRANSLATION protein_coding - CCDS29415.1 1 330.0 0.0 6.5 19.2 38.3 0.0 -4,-5 1.0 12 16.0 PRINCIPAL:1 ENSMUSG00000024847 Aip ENSMUST00000127767 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053303 Slc22a26 ENSMUST00000120522 ENSMUSP00000113607 TRANSLATION protein_coding - - 1 551.0 0.0 5.032 5.4 70.0 12.0 -4,-7 0.7563 - 7.726 ALTERNATIVE:1 ENSMUSG00000053303 Slc22a26 ENSMUST00000065634 ENSMUSP00000064809 TRANSLATION protein_coding - CCDS29533.1 1 552.0 0.0 5.032 6.1 77.7 12.0 -4,-7 1.0 - 8.0 PRINCIPAL:4 ENSMUSG00000024831 Ighmbp2 ENSMUST00000025751 ENSMUSP00000025751 TRANSLATION protein_coding - CCDS29393.1 1 993.0 12.0 11.41 0.4 439.9 0.0 -4,-7 1.0 12 18.0 PRINCIPAL:1 ENSMUSG00000024831 Ighmbp2 ENSMUST00000143079 - NO_TRANSLATION retained_intron ENSMUSG00000024831 Ighmbp2 ENSMUST00000119292 ENSMUSP00000113438 TRANSLATION protein_coding - - 5 885.0 12.0 10.66 0.0 412.1 0.0 -4,-7 0.0524 11 14.832 MINOR ENSMUSG00000024831 Ighmbp2 ENSMUST00000154537 ENSMUSP00000122827 TRANSLATION nonsense_mediated_decay - - 1 253.0 0.0 1.88 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024985 Tcf7l2 ENSMUST00000041717 ENSMUSP00000042950 TRANSLATION protein_coding - CCDS50473.1 1 442.0 0.0 3.6 12.7 415.7 0.0 -4,-5 0.9228 2 11.142 ALTERNATIVE:1 ENSMUSG00000024985 Tcf7l2 ENSMUST00000126434 - NO_TRANSLATION retained_intron ENSMUSG00000024985 Tcf7l2 ENSMUST00000111658 ENSMUSP00000107286 TRANSLATION protein_coding - CCDS50469.1 1 435.0 0.0 3.548 0.0 413.9 0.0 -4,-5 0.0853 2 7.496 MINOR ENSMUSG00000024985 Tcf7l2 ENSMUST00000127653 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024985 Tcf7l2 ENSMUST00000153888 ENSMUSP00000118661 TRANSLATION protein_coding - - 5 477.0 0.0 3.6 1.1 413.9 0.0 -4,-5 0.1229 2 7.63 MINOR ENSMUSG00000024985 Tcf7l2 ENSMUST00000111656 ENSMUSP00000107283 TRANSLATION protein_coding - CCDS50471.1 1 459.0 0.0 3.8 6.2 415.7 0.0 -4,-5 0.8386 2 9.576 MINOR ENSMUSG00000024985 Tcf7l2 ENSMUST00000111659 ENSMUSP00000107287 TRANSLATION protein_coding - CCDS50470.1 1 447.0 0.0 3.6 12.7 415.7 0.0 -4,-5 0.9368 2 11.142 ALTERNATIVE:1 ENSMUSG00000024985 Tcf7l2 ENSMUST00000111653 - NO_TRANSLATION retained_intron ENSMUSG00000024985 Tcf7l2 ENSMUST00000142291 ENSMUSP00000118042 TRANSLATION protein_coding stop - 3 178.0 0.0 0.6 0.0 129.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024985 Tcf7l2 ENSMUST00000111654 - NO_TRANSLATION retained_intron ENSMUSG00000024985 Tcf7l2 ENSMUST00000111652 - NO_TRANSLATION retained_intron ENSMUSG00000024985 Tcf7l2 ENSMUST00000111657 ENSMUSP00000107284 TRANSLATION protein_coding - CCDS50472.1 5 598.0 0.0 3.8 9.1 415.7 0.0 -4,-5 0.775 2 10.456 MINOR ENSMUSG00000024985 Tcf7l2 ENSMUST00000143334 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024985 Tcf7l2 ENSMUST00000111651 - NO_TRANSLATION retained_intron ENSMUSG00000024985 Tcf7l2 ENSMUST00000133008 - NO_TRANSLATION retained_intron ENSMUSG00000024985 Tcf7l2 ENSMUST00000148666 ENSMUSP00000119759 TRANSLATION protein_coding stop - 3 275.0 0.0 2.35 0.0 214.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024985 Tcf7l2 ENSMUST00000111646 ENSMUSP00000107273 TRANSLATION protein_coding - CCDS50474.1 1 299.0 0.0 2.8 3.1 208.6 0.0 -4,-6 0.0679 1 6.638 MINOR ENSMUSG00000024985 Tcf7l2 ENSMUST00000145249 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024985 Tcf7l2 ENSMUST00000061496 ENSMUSP00000050081 TRANSLATION protein_coding - CCDS29911.1 5 459.0 0.0 3.8 14.2 415.7 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000024985 Tcf7l2 ENSMUST00000111649 - NO_TRANSLATION retained_intron ENSMUSG00000024985 Tcf7l2 ENSMUST00000127233 ENSMUSP00000123428 TRANSLATION protein_coding - - 1 442.0 0.0 3.6 2.0 415.7 0.0 -4,-5 0.1642 2 7.902 MINOR ENSMUSG00000071647 Eml3 ENSMUST00000225054 - NO_TRANSLATION retained_intron ENSMUSG00000071647 Eml3 ENSMUST00000224642 ENSMUSP00000153061 TRANSLATION protein_coding start/stop - - 200.0 0.0 3.01 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000071647 Eml3 ENSMUST00000224272 ENSMUSP00000153500 TRANSLATION protein_coding - - - 896.0 0.0 13.99 7.3 175.3 0.0 -4,-5 0.8557 17 10.0 PRINCIPAL:3 ENSMUSG00000071647 Eml3 ENSMUST00000225377 - NO_TRANSLATION retained_intron ENSMUSG00000071647 Eml3 ENSMUST00000226096 - NO_TRANSLATION retained_intron ENSMUSG00000071647 Eml3 ENSMUST00000096241 ENSMUSP00000093960 TRANSLATION protein_coding - CCDS29560.1 1 897.0 0.0 13.99 7.3 175.3 0.0 -4,-5 1.0 16 10.0 ALTERNATIVE:1 ENSMUSG00000063904 Dpp3 ENSMUST00000236782 - NO_TRANSLATION retained_intron ENSMUSG00000063904 Dpp3 ENSMUST00000236496 ENSMUSP00000157895 TRANSLATION protein_coding start/stop - - 185.0 0.0 5.16 0.0 166.3 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000063904 Dpp3 ENSMUST00000235191 - NO_TRANSLATION retained_intron ENSMUSG00000063904 Dpp3 ENSMUST00000237930 - NO_TRANSLATION retained_intron ENSMUSG00000063904 Dpp3 ENSMUST00000236758 ENSMUSP00000157448 TRANSLATION protein_coding stop - - 153.0 0.0 3.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000063904 Dpp3 ENSMUST00000235781 ENSMUSP00000158453 TRANSLATION nonsense_mediated_decay - - - 455.0 0.0 10.91 0.0 404.2 0.0 -4,-5 0.0 14 -2.0 MINOR ENSMUSG00000063904 Dpp3 ENSMUST00000025851 ENSMUSP00000025851 TRANSLATION protein_coding - CCDS29443.1 1 738.0 4.0 17.07 9.6 774.5 0.0 -4,-5 1.0 21 19.0 PRINCIPAL:1 ENSMUSG00000063904 Dpp3 ENSMUST00000235777 - NO_TRANSLATION retained_intron ENSMUSG00000063904 Dpp3 ENSMUST00000236955 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063904 Dpp3 ENSMUST00000237394 ENSMUSP00000158386 TRANSLATION protein_coding stop - - 191.0 0.0 4.66 0.0 22.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000062199 Or5b111 ENSMUST00000080142 ENSMUSP00000079039 TRANSLATION protein_coding - CCDS29655.1 - 307.0 0.0 1.0 8.2 158.5 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000062199 Or5b111 ENSMUST00000207340 ENSMUSP00000146645 TRANSLATION protein_coding - CCDS29655.1 5 307.0 0.0 1.0 8.2 158.5 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034321 Exosc1 ENSMUST00000238034 - NO_TRANSLATION retained_intron ENSMUSG00000034321 Exosc1 ENSMUST00000237177 - NO_TRANSLATION retained_intron ENSMUSG00000034321 Exosc1 ENSMUST00000112123 ENSMUSP00000107751 TRANSLATION protein_coding - CCDS50436.1 1 154.0 0.0 4.33 1.0 35.5 0.0 -4,-5 0.0935 3 9.342 MINOR ENSMUSG00000034321 Exosc1 ENSMUST00000075280 ENSMUSP00000074756 TRANSLATION protein_coding - CCDS29816.1 1 195.0 0.0 5.66 24.5 35.5 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000079339 Ifit1bl1 ENSMUST00000112467 ENSMUSP00000108086 TRANSLATION protein_coding - CCDS50421.1 3 470.0 0.0 1.0 0.1 30.5 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:5 ENSMUSG00000079339 Ifit1bl1 ENSMUST00000168254 ENSMUSP00000132781 TRANSLATION protein_coding - CCDS50422.1 2 470.0 0.0 1.0 0.1 30.5 0.0 -4,-5 1.0 2 8.0 ALTERNATIVE:2 ENSMUSG00000039982 Dtx4 ENSMUST00000045521 ENSMUSP00000040229 TRANSLATION protein_coding - CCDS29631.1 1 616.0 8.0 5.19 9.0 157.2 0.0 -4,-6 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000024868 Dkk1 ENSMUST00000025803 ENSMUSP00000025803 TRANSLATION protein_coding - CCDS29744.1 1 272.0 0.0 1.198 3.8 64.9 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000071604 Entrep1 ENSMUST00000096164 ENSMUSP00000093878 TRANSLATION protein_coding - CCDS50408.1 5 596.0 0.0 1.0 1.5 107.8 0.0 -3,-6 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000071604 Entrep1 ENSMUST00000236123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024663 Rab3il1 ENSMUST00000129882 - NO_TRANSLATION retained_intron ENSMUSG00000024663 Rab3il1 ENSMUST00000238672 ENSMUSP00000158807 TRANSLATION protein_coding - - - 432.0 0.0 6.71 1.2 0.0 0.0 -4,-5 0.332 8 6.064 MINOR ENSMUSG00000024663 Rab3il1 ENSMUST00000144788 ENSMUSP00000121449 TRANSLATION nonsense_mediated_decay - CCDS29569.1 1 383.0 0.0 6.71 6.9 0.0 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000024663 Rab3il1 ENSMUST00000113161 ENSMUSP00000108786 TRANSLATION protein_coding - CCDS29569.1 5 383.0 0.0 6.71 6.9 0.0 0.0 -4,-5 1.0 8 7.874 ALTERNATIVE:1 ENSMUSG00000024663 Rab3il1 ENSMUST00000131407 ENSMUSP00000115976 TRANSLATION protein_coding stop - 5 86.0 0.0 3.16 0.0 0.0 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000024663 Rab3il1 ENSMUST00000121418 ENSMUSP00000113828 TRANSLATION protein_coding - CCDS84417.1 1 314.0 0.0 6.71 1.0 0.0 0.0 -4,-5 0.3116 8 6.0 MINOR ENSMUSG00000024663 Rab3il1 ENSMUST00000117641 ENSMUSP00000113551 TRANSLATION protein_coding - CCDS84416.1 1 310.0 0.0 6.38 0.0 0.0 0.0 -4,-5 0.1076 4 5.34 MINOR ENSMUSG00000024663 Rab3il1 ENSMUST00000137637 ENSMUSP00000120366 TRANSLATION protein_coding stop - 3 57.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000024663 Rab3il1 ENSMUST00000149967 ENSMUSP00000120401 TRANSLATION protein_coding - - 2 430.0 0.0 6.71 7.3 0.0 0.0 -4,-6 0.9874 9 8.0 PRINCIPAL:3 ENSMUSG00000060049 Or5an11 ENSMUST00000073507 ENSMUSP00000073203 TRANSLATION protein_coding - CCDS29626.1 - 312.0 0.0 1.0 9.8 187.1 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060049 Or5an11 ENSMUST00000215407 ENSMUSP00000150313 TRANSLATION protein_coding - CCDS29626.1 5 312.0 0.0 1.0 9.8 187.1 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060049 Or5an11 ENSMUST00000214613 ENSMUSP00000151073 TRANSLATION protein_coding - CCDS29626.1 3 312.0 0.0 1.0 9.8 187.1 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060049 Or5an11 ENSMUST00000214638 ENSMUSP00000149035 TRANSLATION protein_coding - CCDS29626.1 5 312.0 0.0 1.0 9.8 187.1 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060049 Or5an11 ENSMUST00000207969 ENSMUSP00000146532 TRANSLATION protein_coding - CCDS29626.1 3 312.0 0.0 1.0 9.8 187.1 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060049 Or5an11 ENSMUST00000214551 ENSMUSP00000150872 TRANSLATION protein_coding - CCDS29626.1 5 312.0 0.0 1.0 9.8 187.1 4.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024997 Prdx3 ENSMUST00000025961 ENSMUSP00000025961 TRANSLATION protein_coding - CCDS29944.1 1 257.0 0.0 4.5 10.5 177.1 0.0 -3,1 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000037126 Psd ENSMUST00000225072 - NO_TRANSLATION retained_intron ENSMUSG00000037126 Psd ENSMUST00000224556 ENSMUSP00000153381 TRANSLATION protein_coding - - - 393.0 5.0 4.55 0.0 124.3 0.0 -4,0 0.0009 6 6.098 MINOR ENSMUSG00000037126 Psd ENSMUST00000225748 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037126 Psd ENSMUST00000223903 ENSMUSP00000153608 TRANSLATION protein_coding stop - - 25.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037126 Psd ENSMUST00000224447 ENSMUSP00000153377 TRANSLATION protein_coding stop - - 105.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000037126 Psd ENSMUST00000225781 ENSMUSP00000153112 TRANSLATION protein_coding stop - - 65.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000037126 Psd ENSMUST00000224444 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037126 Psd ENSMUST00000225770 - NO_TRANSLATION retained_intron ENSMUSG00000037126 Psd ENSMUST00000223917 ENSMUSP00000153375 TRANSLATION protein_coding stop - - 14.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0071 - -2.0 MINOR ENSMUSG00000037126 Psd ENSMUST00000224094 - NO_TRANSLATION retained_intron ENSMUSG00000037126 Psd ENSMUST00000096029 ENSMUSP00000093729 TRANSLATION protein_coding - CCDS84449.1 5 1025.0 5.0 7.0 3.7 252.7 0.0 -4,-7 0.8997 13 17.806 MINOR ENSMUSG00000037126 Psd ENSMUST00000226062 - NO_TRANSLATION retained_intron ENSMUSG00000037126 Psd ENSMUST00000225323 ENSMUSP00000152942 TRANSLATION protein_coding - CCDS84449.1 - 1025.0 5.0 7.0 3.7 252.7 0.0 -4,-7 0.8997 13 17.806 MINOR ENSMUSG00000037126 Psd ENSMUST00000041391 ENSMUSP00000039728 TRANSLATION protein_coding - CCDS29875.1 1 1024.0 5.0 7.0 7.7 252.7 0.0 -4,-7 1.0 13 19.0 PRINCIPAL:1 ENSMUSG00000055044 Pdlim1 ENSMUST00000068439 ENSMUSP00000064545 TRANSLATION protein_coding - CCDS37977.1 1 327.0 9.0 4.15 14.7 197.4 0.0 -4,-6 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000055044 Pdlim1 ENSMUST00000182636 - NO_TRANSLATION retained_intron ENSMUSG00000055044 Pdlim1 ENSMUST00000182813 - NO_TRANSLATION retained_intron ENSMUSG00000055044 Pdlim1 ENSMUST00000182432 ENSMUSP00000138383 TRANSLATION protein_coding stop - 3 198.0 0.0 2.15 0.0 114.7 0.0 -4,-6 0.0 11 -2.0 MINOR ENSMUSG00000055044 Pdlim1 ENSMUST00000182540 - NO_TRANSLATION retained_intron ENSMUSG00000025064 Col17a1 ENSMUST00000086923 ENSMUSP00000084141 TRANSLATION protein_coding - CCDS38018.1 1 1433.0 0.0 7.6905 0.1 131.3 0.0 -4,-5 1.0 23 8.0 PRINCIPAL:2 ENSMUSG00000025064 Col17a1 ENSMUST00000235883 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025064 Col17a1 ENSMUST00000151102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025064 Col17a1 ENSMUST00000026045 ENSMUSP00000026045 TRANSLATION protein_coding - CCDS70959.1 1 1470.0 0.0 7.4405 0.4 131.3 0.0 -4,-5 0.5135 23 7.502 ALTERNATIVE:2 ENSMUSG00000025064 Col17a1 ENSMUST00000145254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045826 Ptprcap ENSMUST00000061086 ENSMUSP00000053412 TRANSLATION protein_coding - CCDS37884.1 1 197.0 0.0 0.0 0.4 159.4 1.0 -2,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000045826 Ptprcap ENSMUST00000236632 ENSMUSP00000158331 TRANSLATION protein_coding stop - - 134.0 0.0 0.0 0.0 86.7 1.0 -2,-5 0.0027 2 -2.0 MINOR ENSMUSG00000007338 Mrpl49 ENSMUST00000007482 ENSMUSP00000007482 TRANSLATION protein_coding - CCDS29488.1 1 166.0 0.0 3.33 11.0 95.6 0.0 -3,1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000007338 Mrpl49 ENSMUST00000236412 ENSMUSP00000157635 TRANSLATION protein_coding start - - 115.0 0.0 2.48 0.0 49.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000007338 Mrpl49 ENSMUST00000236833 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000007338 Mrpl49 ENSMUST00000235520 ENSMUSP00000157535 TRANSLATION protein_coding - - - 56.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0004 - 0.0 MINOR ENSMUSG00000044390 Tigd3 ENSMUST00000055911 ENSMUSP00000059302 TRANSLATION protein_coding - CCDS29483.1 1 470.0 0.0 0.0 9.1 133.9 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000044390 Tigd3 ENSMUST00000236767 ENSMUSP00000157880 TRANSLATION protein_coding - CCDS29483.1 - 470.0 0.0 0.0 9.1 133.9 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000024798 Htr7 ENSMUST00000164781 ENSMUSP00000131912 TRANSLATION nonsense_mediated_decay - - 1 198.0 0.0 0.7 0.0 95.4 4.0 -4,-6 0.0037 - -2.0 MINOR ENSMUSG00000024798 Htr7 ENSMUST00000165215 ENSMUSP00000128386 TRANSLATION nonsense_mediated_decay - - 1 198.0 0.0 0.7 0.0 95.4 4.0 -4,-6 0.0037 - -2.0 MINOR ENSMUSG00000024798 Htr7 ENSMUST00000099505 ENSMUSP00000097105 TRANSLATION protein_coding - CCDS84436.1 5 470.0 0.0 1.98 0.3 249.1 8.0 -4,-6 0.3507 - 6.0 MINOR ENSMUSG00000024798 Htr7 ENSMUST00000164639 ENSMUSP00000126847 TRANSLATION protein_coding - CCDS29769.1 1 448.0 0.0 1.98 8.0 249.1 8.0 -4,-6 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000024798 Htr7 ENSMUST00000166074 ENSMUSP00000126150 TRANSLATION protein_coding - - 5 435.0 0.0 1.98 6.5 249.1 8.0 -4,-6 0.7603 - 8.358 ALTERNATIVE:1 ENSMUSG00000024798 Htr7 ENSMUST00000170360 ENSMUSP00000131517 TRANSLATION nonsense_mediated_decay - - 5 344.0 0.0 1.1 0.0 144.2 6.0 -4,-6 0.0022 - -2.0 MINOR ENSMUSG00000024959 Bad ENSMUST00000025910 ENSMUSP00000025910 TRANSLATION protein_coding - CCDS29513.1 1 204.0 0.0 0.75 0.4 299.0 0.0 -4,-7 0.2975 3 12.0 MINOR ENSMUSG00000024959 Bad ENSMUST00000113423 ENSMUSP00000109050 TRANSLATION protein_coding - CCDS70924.1 1 162.0 0.0 0.75 11.0 299.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000024959 Bad ENSMUST00000145463 ENSMUSP00000121778 TRANSLATION protein_coding start - 3 63.0 0.0 0.75 0.0 32.9 0.0 -4,-2 0.0263 - -2.0 MINOR ENSMUSG00000024959 Bad ENSMUST00000237334 ENSMUSP00000158399 TRANSLATION protein_coding - - - 131.0 0.0 0.75 0.0 202.5 0.0 -4,-5 0.016 2 6.21 MINOR ENSMUSG00000024959 Bad ENSMUST00000113426 ENSMUSP00000109053 TRANSLATION protein_coding - - 5 178.0 0.0 0.75 0.0 202.6 0.0 -4,-7 0.0188 2 6.216 MINOR ENSMUSG00000024959 Bad ENSMUST00000141410 ENSMUSP00000114597 TRANSLATION protein_coding start - 2 161.0 0.0 0.75 0.0 197.7 0.0 -4,-5 0.062 2 -2.0 MINOR ENSMUSG00000024959 Bad ENSMUST00000238184 ENSMUSP00000158059 TRANSLATION protein_coding - CCDS70924.1 - 162.0 0.0 0.75 11.0 299.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000024959 Bad ENSMUST00000235240 ENSMUSP00000157664 TRANSLATION protein_coding - CCDS70924.1 - 162.0 0.0 0.75 11.0 299.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000024959 Bad ENSMUST00000237244 - NO_TRANSLATION retained_intron ENSMUSG00000023307 Marchf5 ENSMUST00000128530 ENSMUSP00000118920 TRANSLATION protein_coding start - 3 187.0 0.0 0.232 0.0 0.0 6.0 -4,-7 0.0046 3 -2.0 MINOR ENSMUSG00000023307 Marchf5 ENSMUST00000024078 ENSMUSP00000024078 TRANSLATION protein_coding - CCDS29776.1 1 278.0 8.0 0.712 19.6 53.9 6.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000023307 Marchf5 ENSMUST00000112391 ENSMUSP00000108010 TRANSLATION protein_coding - CCDS50427.1 1 244.0 8.0 0.712 0.0 53.9 6.0 -4,-5 0.175 6 18.0 MINOR ENSMUSG00000023307 Marchf5 ENSMUST00000148105 - NO_TRANSLATION retained_intron ENSMUSG00000074925 Ptar1 ENSMUST00000235740 ENSMUSP00000157451 TRANSLATION nonsense_mediated_decay - - - 66.0 0.0 0.75 0.0 31.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000074925 Ptar1 ENSMUST00000067077 ENSMUSP00000069426 TRANSLATION protein_coding - - - 112.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000074925 Ptar1 ENSMUST00000237333 ENSMUSP00000157782 TRANSLATION protein_coding - CCDS50405.1 - 424.0 0.0 4.8 8.4 75.1 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000074925 Ptar1 ENSMUST00000236951 ENSMUSP00000158406 TRANSLATION protein_coding start/stop - - 200.0 0.0 1.55 0.0 46.3 0.0 -4,-5 0.0009 1 -2.0 MINOR ENSMUSG00000074925 Ptar1 ENSMUST00000099560 ENSMUSP00000097156 TRANSLATION protein_coding - - 5 66.0 0.0 0.75 0.0 31.8 0.0 -4,-5 0.0 - 2.538 MINOR ENSMUSG00000083282 Ctsf ENSMUST00000119694 ENSMUSP00000112481 TRANSLATION protein_coding - CCDS29440.1 1 462.0 4.0 7.495 0.3 277.0 0.0 3,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000083282 Ctsf ENSMUST00000237755 - NO_TRANSLATION retained_intron ENSMUSG00000083282 Ctsf ENSMUST00000238118 - NO_TRANSLATION retained_intron ENSMUSG00000083282 Ctsf ENSMUST00000237011 ENSMUSP00000158491 TRANSLATION protein_coding stop - - 128.0 0.0 0.0 0.0 0.0 0.0 3,-2 0.0017 1 -2.0 MINOR ENSMUSG00000083282 Ctsf ENSMUST00000235931 - NO_TRANSLATION retained_intron ENSMUSG00000083282 Ctsf ENSMUST00000235464 - NO_TRANSLATION retained_intron ENSMUSG00000083282 Ctsf ENSMUST00000237504 ENSMUSP00000158382 TRANSLATION protein_coding stop - - 126.0 0.0 0.375 0.0 0.0 0.0 3,-2 0.0027 1 -2.0 MINOR ENSMUSG00000083282 Ctsf ENSMUST00000235354 - NO_TRANSLATION retained_intron ENSMUSG00000083282 Ctsf ENSMUST00000236406 - NO_TRANSLATION retained_intron ENSMUSG00000083282 Ctsf ENSMUST00000237401 - NO_TRANSLATION retained_intron ENSMUSG00000083282 Ctsf ENSMUST00000237784 - NO_TRANSLATION retained_intron ENSMUSG00000083282 Ctsf ENSMUST00000235264 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025035 Arl3 ENSMUST00000236067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025035 Arl3 ENSMUST00000236255 ENSMUSP00000158118 TRANSLATION protein_coding - - - 180.0 17.0 3.8 0.0 231.2 0.0 -4,-7 0.032 7 17.022 MINOR ENSMUSG00000025035 Arl3 ENSMUST00000026009 ENSMUSP00000026009 TRANSLATION protein_coding - CCDS38010.1 1 182.0 17.0 4.0 32.6 240.8 0.0 -4,-7 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000025035 Arl3 ENSMUST00000235489 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025035 Arl3 ENSMUST00000238076 - NO_TRANSLATION retained_intron ENSMUSG00000025035 Arl3 ENSMUST00000235540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079258 Calhm1 ENSMUST00000111813 ENSMUSP00000107444 TRANSLATION protein_coding - CCDS38015.1 5 348.0 0.0 1.8 9.2 306.0 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025154 Arhgap19 ENSMUST00000177495 ENSMUSP00000135293 TRANSLATION protein_coding - - 1 479.0 0.0 1.69 0.0 124.2 0.0 -4,-5 0.08 6 12.0 MINOR ENSMUSG00000025154 Arhgap19 ENSMUST00000026150 ENSMUSP00000026150 TRANSLATION protein_coding - CCDS37989.1 1 494.0 0.0 1.69 8.0 124.2 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000025154 Arhgap19 ENSMUST00000163265 ENSMUSP00000129586 TRANSLATION protein_coding - CCDS50435.1 5 479.0 0.0 1.69 0.0 124.2 0.0 -4,-5 0.2615 5 12.0 MINOR ENSMUSG00000006270 Vax1 ENSMUST00000173710 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006270 Vax1 ENSMUST00000172821 ENSMUSP00000134642 TRANSLATION protein_coding - CCDS29933.1 1 338.0 0.0 1.4 5.7 77.1 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000067529 Or4d11 ENSMUST00000087831 ENSMUSP00000085134 TRANSLATION protein_coding - CCDS29618.1 - 310.0 0.0 1.0 11.3 163.2 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067529 Or4d11 ENSMUST00000214472 ENSMUSP00000150649 TRANSLATION protein_coding - CCDS29618.1 5 310.0 0.0 1.0 11.3 163.2 6.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000079478 Znrd2 ENSMUST00000025885 ENSMUSP00000025885 TRANSLATION protein_coding - CCDS29479.1 1 199.0 4.0 2.08 11.6 59.7 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000079478 Znrd2 ENSMUST00000159008 - NO_TRANSLATION retained_intron ENSMUSG00000079478 Znrd2 ENSMUST00000160141 - NO_TRANSLATION retained_intron ENSMUSG00000079478 Znrd2 ENSMUST00000159693 ENSMUSP00000123867 TRANSLATION protein_coding - - 3 88.0 2.0 1.33 0.0 35.8 0.0 -4,-5 0.0 1 9.434 MINOR ENSMUSG00000079478 Znrd2 ENSMUST00000162976 ENSMUSP00000125679 TRANSLATION protein_coding start - 3 59.0 4.0 1.08 0.0 39.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025215 Tlx1 ENSMUST00000026236 ENSMUSP00000026236 TRANSLATION protein_coding - CCDS29858.1 1 333.0 0.0 2.3 7.9 72.1 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000025215 Tlx1 ENSMUST00000174617 ENSMUSP00000133627 TRANSLATION protein_coding - - 5 91.0 0.0 1.3 0.0 27.5 0.0 -4,-7 0.0 1 5.676 MINOR ENSMUSG00000025007 Aldh18a1 ENSMUST00000175967 ENSMUSP00000135419 TRANSLATION protein_coding start - 1 100.0 0.0 2.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025007 Aldh18a1 ENSMUST00000155613 - NO_TRANSLATION retained_intron ENSMUSG00000025007 Aldh18a1 ENSMUST00000176939 ENSMUSP00000135426 TRANSLATION protein_coding - CCDS57144.1 1 793.0 13.0 11.244 9.6 173.1 0.0 -4,0 0.999 28 17.0 ALTERNATIVE:1 ENSMUSG00000025007 Aldh18a1 ENSMUST00000175932 ENSMUSP00000135417 TRANSLATION protein_coding stop - 3 48.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000025007 Aldh18a1 ENSMUST00000134749 - NO_TRANSLATION retained_intron ENSMUSG00000025007 Aldh18a1 ENSMUST00000176955 ENSMUSP00000135759 TRANSLATION protein_coding stop - 3 83.0 0.0 0.63 0.0 0.0 0.0 -4,0 0.0 2 -2.0 MINOR ENSMUSG00000025007 Aldh18a1 ENSMUST00000025979 ENSMUSP00000025979 TRANSLATION protein_coding - CCDS29803.1 1 795.0 13.0 11.244 9.6 172.1 0.0 -4,0 1.0 28 17.0 PRINCIPAL:4 ENSMUSG00000025007 Aldh18a1 ENSMUST00000149476 ENSMUSP00000115429 TRANSLATION protein_coding stop - 3 173.0 4.0 0.584 0.0 36.9 0.0 -4,0 0.0 6 -2.0 MINOR ENSMUSG00000101031 Ms4a12 ENSMUST00000186228 ENSMUSP00000140981 TRANSLATION protein_coding - - 5 263.0 0.0 3.5 1.2 55.7 0.0 -4,-7 0.7335 2 13.0 PRINCIPAL:1 ENSMUSG00000067242 Lgi1 ENSMUST00000197123 ENSMUSP00000142953 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 0.8 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000067242 Lgi1 ENSMUST00000134832 - NO_TRANSLATION retained_intron ENSMUSG00000067242 Lgi1 ENSMUST00000196090 ENSMUSP00000143538 TRANSLATION protein_coding - - 5 509.0 0.0 5.8 4.9 281.1 0.0 -3,-6 0.4508 14 9.354 MINOR ENSMUSG00000067242 Lgi1 ENSMUST00000130039 - NO_TRANSLATION retained_intron ENSMUSG00000067242 Lgi1 ENSMUST00000087252 ENSMUSP00000084507 TRANSLATION nonsense_mediated_decay - - 1 72.0 0.0 0.8 0.0 0.0 0.0 -3,-6 0.0 2 -2.0 MINOR ENSMUSG00000067242 Lgi1 ENSMUST00000199812 ENSMUSP00000143502 TRANSLATION protein_coding - - 5 533.0 0.0 6.55 0.0 302.3 0.0 -3,-6 0.0323 14 10.5 MINOR ENSMUSG00000067242 Lgi1 ENSMUST00000199665 - NO_TRANSLATION retained_intron ENSMUSG00000067242 Lgi1 ENSMUST00000198045 ENSMUSP00000143292 TRANSLATION protein_coding - - 5 291.0 0.0 5.8 5.1 86.1 0.0 -3,-6 0.3161 8 4.707 MINOR ENSMUSG00000067242 Lgi1 ENSMUST00000198518 ENSMUSP00000143128 TRANSLATION protein_coding - CCDS29786.1 1 557.0 0.0 7.3 8.2 302.3 0.0 -3,-6 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000024844 Banf1 ENSMUST00000025762 ENSMUSP00000025762 TRANSLATION protein_coding - CCDS29458.1 1 89.0 0.0 2.0 32.9 149.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000024844 Banf1 ENSMUST00000237704 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024844 Banf1 ENSMUST00000237167 ENSMUSP00000158117 TRANSLATION protein_coding - CCDS29458.1 - 89.0 0.0 2.0 32.9 149.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000024844 Banf1 ENSMUST00000170010 ENSMUSP00000126202 TRANSLATION protein_coding - CCDS29458.1 1 89.0 0.0 2.0 32.9 149.3 0.0 -4,-5 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000045678 Or5b124 ENSMUST00000053113 ENSMUSP00000062444 TRANSLATION protein_coding - CCDS29667.1 - 313.0 0.0 1.0 12.5 180.3 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045678 Or5b124 ENSMUST00000217182 ENSMUSP00000149711 TRANSLATION protein_coding - CCDS29667.1 5 313.0 0.0 1.0 12.5 180.3 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025185 Loxl4 ENSMUST00000171432 ENSMUSP00000126686 TRANSLATION protein_coding - CCDS29830.1 1 757.0 0.0 8.74 7.5 663.8 0.0 3,-2 1.0 9 10.0 PRINCIPAL:4 ENSMUSG00000025185 Loxl4 ENSMUST00000166128 ENSMUSP00000126552 TRANSLATION protein_coding stop - 3 147.0 0.0 1.6 0.0 105.1 0.0 0,-3 0.0 1 -2.0 MINOR ENSMUSG00000025185 Loxl4 ENSMUST00000026190 ENSMUSP00000026190 TRANSLATION protein_coding - CCDS29830.1 1 757.0 0.0 8.74 7.5 663.8 0.0 3,-2 1.0 9 10.0 PRINCIPAL:4 ENSMUSG00000025185 Loxl4 ENSMUST00000164014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025185 Loxl4 ENSMUST00000164786 ENSMUSP00000125803 TRANSLATION protein_coding - CCDS50441.1 1 758.0 0.0 8.74 7.5 663.8 0.0 3,-2 0.9997 9 10.0 ALTERNATIVE:1 ENSMUSG00000024944 Arl2 ENSMUST00000134821 - NO_TRANSLATION retained_intron ENSMUSG00000024944 Arl2 ENSMUST00000123193 - NO_TRANSLATION retained_intron ENSMUSG00000024944 Arl2 ENSMUST00000235200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024944 Arl2 ENSMUST00000025893 ENSMUSP00000025893 TRANSLATION protein_coding - CCDS29496.1 1 184.0 19.0 4.5 29.8 243.4 0.0 -4,-7 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000024944 Arl2 ENSMUST00000236138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024670 Cd6 ENSMUST00000080292 ENSMUSP00000079172 TRANSLATION protein_coding - CCDS37917.1 1 665.0 4.0 2.385 0.4 208.6 1.0 1,-3 1.0 6 12.0 PRINCIPAL:2 ENSMUSG00000024670 Cd6 ENSMUST00000025572 - NO_TRANSLATION retained_intron ENSMUSG00000024670 Cd6 ENSMUST00000039043 ENSMUSP00000046861 TRANSLATION protein_coding - CCDS50391.1 1 626.0 4.0 2.385 0.4 208.6 1.0 1,-3 0.456 5 12.0 ALTERNATIVE:2 ENSMUSG00000024670 Cd6 ENSMUST00000236355 - NO_TRANSLATION retained_intron ENSMUSG00000024670 Cd6 ENSMUST00000174176 ENSMUSP00000134639 TRANSLATION protein_coding stop - 5 327.0 4.0 1.385 0.0 137.2 1.0 1,-3 0.0048 3 -2.0 MINOR ENSMUSG00000024670 Cd6 ENSMUST00000173613 - NO_TRANSLATION retained_intron ENSMUSG00000071528 Atp5mk ENSMUST00000096014 ENSMUSP00000093713 TRANSLATION protein_coding - CCDS38014.1 1 58.0 0.0 1.5 33.0 100.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000071528 Atp5mk ENSMUST00000235771 ENSMUSP00000158561 TRANSLATION protein_coding - CCDS38014.1 - 58.0 0.0 1.5 33.0 100.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000071528 Atp5mk ENSMUST00000237720 ENSMUSP00000157712 TRANSLATION nonsense_mediated_decay - CCDS38014.1 - 58.0 0.0 1.5 33.0 100.5 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000071528 Atp5mk ENSMUST00000236170 ENSMUSP00000158514 TRANSLATION protein_coding - CCDS38014.1 - 58.0 0.0 1.5 33.0 100.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000054526 Or9q1 ENSMUST00000219674 ENSMUSP00000151471 TRANSLATION protein_coding - CCDS29675.1 5 311.0 0.0 1.0 11.0 161.4 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054526 Or9q1 ENSMUST00000215760 ENSMUSP00000149543 TRANSLATION protein_coding - CCDS29675.1 5 311.0 0.0 1.0 11.0 161.4 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054526 Or9q1 ENSMUST00000216287 ENSMUSP00000149067 TRANSLATION protein_coding - CCDS29675.1 5 311.0 0.0 1.0 11.0 161.4 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054526 Or9q1 ENSMUST00000214579 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054526 Or9q1 ENSMUST00000214475 ENSMUSP00000151165 TRANSLATION protein_coding - CCDS29675.1 5 311.0 0.0 1.0 11.0 161.4 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054526 Or9q1 ENSMUST00000217079 ENSMUSP00000148910 TRANSLATION protein_coding - CCDS29675.1 - 311.0 0.0 1.0 11.0 161.4 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000054526 Or9q1 ENSMUST00000067670 ENSMUSP00000067303 TRANSLATION protein_coding - CCDS29675.1 5 311.0 0.0 1.0 11.0 161.4 6.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091471 Gm20538 ENSMUST00000166808 ENSMUSP00000126763 TRANSLATION protein_coding,RT stop - 3 332.0 0.0 4.67 0.0 214.8 0.0 -3,1 0.7847 - -2.0 PRINCIPAL:1 ENSMUSG00000046913 Or5b99 ENSMUST00000063144 ENSMUSP00000049885 TRANSLATION protein_coding - CCDS29647.1 - 310.0 0.0 1.0 11.4 173.5 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000046913 Or5b99 ENSMUST00000207997 ENSMUSP00000146874 TRANSLATION protein_coding - CCDS29647.1 3 310.0 0.0 1.0 11.4 173.5 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041845 Rhod ENSMUST00000048197 ENSMUSP00000036031 TRANSLATION protein_coding - CCDS29427.1 1 210.0 22.0 5.0 10.6 182.1 0.0 -4,-6 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000041845 Rhod ENSMUST00000151420 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041845 Rhod ENSMUST00000117462 ENSMUSP00000112607 TRANSLATION protein_coding - - 1 200.0 22.0 4.4 0.0 150.2 0.0 -4,-6 0.0045 5 14.886 MINOR ENSMUSG00000041845 Rhod ENSMUST00000235680 ENSMUSP00000157654 TRANSLATION protein_coding - - - 251.0 22.0 4.25 0.0 150.2 0.0 -4,-6 0.0 5 14.586 MINOR ENSMUSG00000035283 Adrb1 ENSMUST00000236875 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035283 Adrb1 ENSMUST00000038949 ENSMUSP00000040847 TRANSLATION protein_coding - CCDS29919.1 - 466.0 0.0 0.64 3.3 270.4 0.0 -2,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000037477 Tbx10 ENSMUST00000041871 ENSMUSP00000037401 TRANSLATION protein_coding - CCDS29407.1 1 385.0 0.0 4.35 2.7 263.8 0.0 -2,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000047604 Frat2 ENSMUST00000059231 ENSMUSP00000052788 TRANSLATION protein_coding - CCDS29813.1 - 231.0 0.0 0.0 0.0 241.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000034659 Tmem109 ENSMUST00000144681 ENSMUSP00000116750 TRANSLATION protein_coding stop - 3 93.0 0.0 0.0 0.0 0.0 0.0 0,2 0.0 3 -2.0 MINOR ENSMUSG00000034659 Tmem109 ENSMUST00000138897 - NO_TRANSLATION retained_intron ENSMUSG00000034659 Tmem109 ENSMUST00000133303 ENSMUSP00000120261 TRANSLATION protein_coding stop - 3 213.0 0.0 0.0 0.0 148.1 6.0 3,-1 0.0176 3 -2.0 MINOR ENSMUSG00000034659 Tmem109 ENSMUST00000147699 ENSMUSP00000120662 TRANSLATION protein_coding - - 2 115.0 0.0 0.0 0.0 41.0 2.0 3,-1 0.002 3 0.0 MINOR ENSMUSG00000034659 Tmem109 ENSMUST00000129052 - NO_TRANSLATION retained_intron ENSMUSG00000034659 Tmem109 ENSMUST00000151355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034659 Tmem109 ENSMUST00000038128 ENSMUSP00000039529 TRANSLATION protein_coding - CCDS29590.1 1 243.0 0.0 0.75 7.7 179.4 6.0 3,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000034659 Tmem109 ENSMUST00000128835 ENSMUSP00000122130 TRANSLATION protein_coding stop - 3 73.0 0.0 0.0 0.0 0.0 0.0 3,-1 0.0028 3 -2.0 MINOR ENSMUSG00000024975 Pdcd4 ENSMUST00000074371 ENSMUSP00000073975 TRANSLATION protein_coding - CCDS29903.1 1 469.0 0.0 7.18 33.5 161.6 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000024975 Pdcd4 ENSMUST00000165617 ENSMUSP00000133135 TRANSLATION protein_coding - CCDS29903.1 1 469.0 0.0 7.18 33.5 161.6 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000024975 Pdcd4 ENSMUST00000025931 ENSMUSP00000025931 TRANSLATION protein_coding - CCDS29903.1 1 469.0 0.0 7.18 33.5 161.6 0.0 -4,-5 1.0 18 16.0 PRINCIPAL:1 ENSMUSG00000024975 Pdcd4 ENSMUST00000237699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024975 Pdcd4 ENSMUST00000237060 ENSMUSP00000157883 TRANSLATION nonsense_mediated_decay - - - 319.0 0.0 2.75 0.0 72.5 0.0 -4,-5 0.0007 8 -2.0 MINOR ENSMUSG00000024975 Pdcd4 ENSMUST00000235854 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025190 Got1 ENSMUST00000124954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025190 Got1 ENSMUST00000132504 - NO_TRANSLATION retained_intron ENSMUSG00000025190 Got1 ENSMUST00000133325 ENSMUSP00000117986 TRANSLATION nonsense_mediated_decay start - 5 182.0 8.0 4.198 0.0 128.8 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000025190 Got1 ENSMUST00000026196 ENSMUSP00000026196 TRANSLATION protein_coding - CCDS29832.1 1 413.0 15.0 9.33 17.2 313.5 0.0 -4,-7 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000024937 Ehbp1l1 ENSMUST00000049295 ENSMUSP00000037656 TRANSLATION protein_coding - CCDS50359.1 1 1718.0 0.0 5.696 0.0 288.8 0.0 -4,-2 0.7647 28 8.0 PRINCIPAL:3 ENSMUSG00000024937 Ehbp1l1 ENSMUST00000237367 ENSMUSP00000157445 TRANSLATION nonsense_mediated_decay start - - 61.0 0.0 1.132 0.0 28.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024937 Ehbp1l1 ENSMUST00000236215 ENSMUSP00000157990 TRANSLATION protein_coding - - - 877.0 0.0 5.696 0.1 288.8 0.0 -4,-2 0.1998 13 8.0 ALTERNATIVE:2 ENSMUSG00000024937 Ehbp1l1 ENSMUST00000237081 ENSMUSP00000158523 TRANSLATION protein_coding stop - - 744.0 0.0 1.5 0.0 151.0 0.0 -4,-2 0.0489 13 -2.0 MINOR ENSMUSG00000024937 Ehbp1l1 ENSMUST00000075606 ENSMUSP00000126740 TRANSLATION protein_coding - CCDS50360.1 1 774.0 0.0 5.696 1.1 288.8 0.0 -4,-2 1.0 12 9.0 ALTERNATIVE:2 ENSMUSG00000024937 Ehbp1l1 ENSMUST00000237868 - NO_TRANSLATION retained_intron ENSMUSG00000024937 Ehbp1l1 ENSMUST00000235730 ENSMUSP00000157612 TRANSLATION protein_coding - - - 762.0 0.0 5.696 0.8 288.8 0.0 -4,-2 0.2581 12 8.0 ALTERNATIVE:2 ENSMUSG00000024757 Slc22a19 ENSMUST00000141771 - NO_TRANSLATION retained_intron ENSMUSG00000024757 Slc22a19 ENSMUST00000138317 - NO_TRANSLATION retained_intron ENSMUSG00000024757 Slc22a19 ENSMUST00000025666 ENSMUSP00000025666 TRANSLATION protein_coding - CCDS29532.1 1 551.0 0.0 5.065 7.2 71.9 0.0 -3,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035735 Dagla ENSMUST00000039327 ENSMUSP00000046358 TRANSLATION protein_coding - CCDS29574.1 5 1044.0 0.0 0.912 5.3 38.7 3.0 -3,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000035735 Dagla ENSMUST00000156361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035735 Dagla ENSMUST00000125567 ENSMUSP00000138702 TRANSLATION nonsense_mediated_decay - - 1 99.0 0.0 0.0 0.0 0.0 2.0 -3,-5 0.0008 - -2.0 MINOR ENSMUSG00000024912 Fosl1 ENSMUST00000235958 - NO_TRANSLATION retained_intron ENSMUSG00000024912 Fosl1 ENSMUST00000025850 ENSMUSP00000025850 TRANSLATION protein_coding - CCDS29464.1 1 273.0 0.0 1.6 7.6 30.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024912 Fosl1 ENSMUST00000236774 ENSMUSP00000158080 TRANSLATION protein_coding stop - - 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000109022 Or5bb10 ENSMUST00000207710 ENSMUSP00000146529 TRANSLATION protein_coding - - 5 346.0 0.0 1.0 0.0 174.6 8.0 -4,-5 0.5695 - 12.0 PRINCIPAL:1 ENSMUSG00000109022 Or5bb10 ENSMUST00000180978 ENSMUSP00000146641 TRANSLATION protein_coding start/stop - - 310.0 0.0 1.0 7.1 174.6 8.0 -3,-4 1.0 - -2.0 MINOR ENSMUSG00000053536 Cstf2t ENSMUST00000066039 ENSMUSP00000093831 TRANSLATION protein_coding - CCDS37958.1 - 632.0 0.0 0.2 0.0 253.0 0.0 -4,-7 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000024740 Ddb1 ENSMUST00000025649 ENSMUSP00000025649 TRANSLATION protein_coding - CCDS37915.1 1 1140.0 0.0 26.5 28.7 293.1 0.0 -4,-6 1.0 39 16.0 PRINCIPAL:1 ENSMUSG00000024740 Ddb1 ENSMUST00000236596 - NO_TRANSLATION retained_intron ENSMUSG00000024740 Ddb1 ENSMUST00000237804 - NO_TRANSLATION retained_intron ENSMUSG00000024740 Ddb1 ENSMUST00000237138 - NO_TRANSLATION retained_intron ENSMUSG00000024740 Ddb1 ENSMUST00000237318 - NO_TRANSLATION retained_intron ENSMUSG00000024740 Ddb1 ENSMUST00000236937 - NO_TRANSLATION retained_intron ENSMUSG00000024740 Ddb1 ENSMUST00000237337 ENSMUSP00000157538 TRANSLATION protein_coding - - - 451.0 0.0 10.5 0.0 293.1 0.0 -4,-6 0.014 13 6.0 MINOR ENSMUSG00000024740 Ddb1 ENSMUST00000236328 ENSMUSP00000158549 TRANSLATION protein_coding start/stop - - 196.0 0.0 3.75 0.0 0.0 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000024740 Ddb1 ENSMUST00000236722 - NO_TRANSLATION retained_intron ENSMUSG00000024740 Ddb1 ENSMUST00000236279 - NO_TRANSLATION retained_intron ENSMUSG00000024740 Ddb1 ENSMUST00000236280 ENSMUSP00000158020 TRANSLATION protein_coding stop - - 420.0 0.0 9.6 0.0 0.0 0.0 -4,-6 0.0012 16 -2.0 MINOR ENSMUSG00000074896 Ifit3 ENSMUST00000102825 ENSMUSP00000099889 TRANSLATION protein_coding - CCDS29762.1 1 403.0 0.0 0.8 0.0 42.3 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000024738 Pga5 ENSMUST00000025647 ENSMUSP00000025647 TRANSLATION protein_coding - CCDS29584.1 1 387.0 5.0 7.5 7.0 403.1 0.0 1,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000024738 Pga5 ENSMUST00000225016 - NO_TRANSLATION retained_intron ENSMUSG00000024738 Pga5 ENSMUST00000225135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037071 Scd1 ENSMUST00000236824 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037071 Scd1 ENSMUST00000041331 ENSMUSP00000036936 TRANSLATION protein_coding - CCDS29850.1 1 355.0 0.0 5.0 12.5 57.2 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000037071 Scd1 ENSMUST00000235741 ENSMUSP00000157730 TRANSLATION protein_coding stop - - 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046805 Mpeg1 ENSMUST00000081035 ENSMUSP00000108573 TRANSLATION protein_coding - CCDS37926.1 1 720.0 0.0 1.0 0.4 112.0 0.0 4,-1 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000059326 Csf2ra ENSMUST00000237877 - NO_TRANSLATION retained_intron ENSMUSG00000059326 Csf2ra ENSMUST00000076046 ENSMUSP00000075423 TRANSLATION protein_coding - CCDS29946.1 1 388.0 0.0 3.075 0.0 64.6 1.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000059326 Csf2ra ENSMUST00000235987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059326 Csf2ra ENSMUST00000235483 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059326 Csf2ra ENSMUST00000236872 - NO_TRANSLATION retained_intron ENSMUSG00000059326 Csf2ra ENSMUST00000237386 ENSMUSP00000158457 TRANSLATION protein_coding - CCDS29946.1 - 388.0 0.0 3.075 0.0 64.6 1.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000059326 Csf2ra ENSMUST00000237286 - NO_TRANSLATION retained_intron ENSMUSG00000059326 Csf2ra ENSMUST00000235172 - NO_TRANSLATION retained_intron ENSMUSG00000025193 Cutc ENSMUST00000112047 ENSMUSP00000107678 TRANSLATION protein_coding - CCDS50443.1 1 272.0 0.0 6.91 9.2 262.9 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000025193 Cutc ENSMUST00000123564 - NO_TRANSLATION retained_intron ENSMUSG00000025193 Cutc ENSMUST00000026199 ENSMUSP00000026199 TRANSLATION protein_coding - CCDS29837.1 1 262.0 0.0 6.58 1.1 229.8 0.0 -4,-5 0.1194 5 9.39 MINOR ENSMUSG00000025193 Cutc ENSMUST00000153295 ENSMUSP00000118906 TRANSLATION protein_coding stop - 3 254.0 0.0 6.41 0.0 262.9 0.0 -4,-5 0.0093 5 -2.0 MINOR ENSMUSG00000040022 Rab11fip2 ENSMUST00000170819 ENSMUSP00000133151 TRANSLATION protein_coding - - 5 512.0 0.0 1.695 19.4 130.0 0.0 -4,-6 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000040022 Rab11fip2 ENSMUST00000171986 ENSMUSP00000128813 TRANSLATION protein_coding - CCDS50482.1 1 370.0 0.0 1.0 0.0 63.2 0.0 -4,-6 0.0183 11 5.532 MINOR ENSMUSG00000040022 Rab11fip2 ENSMUST00000051996 ENSMUSP00000059978 TRANSLATION protein_coding - CCDS38033.1 1 529.0 0.0 1.695 0.0 130.0 0.0 -4,-6 0.2878 14 12.0 MINOR ENSMUSG00000095098 Ccdc85b ENSMUST00000179549 ENSMUSP00000137537 TRANSLATION protein_coding - CCDS50357.1 - 202.0 0.0 2.4 9.0 263.6 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000095098 Ccdc85b ENSMUST00000236881 ENSMUSP00000157571 TRANSLATION protein_coding - - - 85.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.0022 - 0.0 MINOR ENSMUSG00000038843 Gcnt1 ENSMUST00000169897 ENSMUSP00000127835 TRANSLATION protein_coding - CCDS29687.1 3 428.0 21.0 1.0 4.9 218.4 0.0 -2,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000038843 Gcnt1 ENSMUST00000235184 ENSMUSP00000157544 TRANSLATION protein_coding - CCDS29687.1 - 428.0 21.0 1.0 4.9 218.4 0.0 -2,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000038843 Gcnt1 ENSMUST00000174236 ENSMUSP00000133935 TRANSLATION protein_coding - CCDS29687.1 1 428.0 21.0 1.0 4.9 218.4 0.0 -2,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000038843 Gcnt1 ENSMUST00000236139 ENSMUSP00000157681 TRANSLATION protein_coding - CCDS29687.1 - 428.0 21.0 1.0 4.9 218.4 0.0 -2,-2 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000038843 Gcnt1 ENSMUST00000174137 - NO_TRANSLATION retained_intron ENSMUSG00000049562 Ap5b1 ENSMUST00000235575 ENSMUSP00000157737 TRANSLATION protein_coding - CCDS29470.1 - 876.0 0.0 0.0 11.0 0.0 0.0 -3,-1 1.0 6 3.0 PRINCIPAL:1 ENSMUSG00000049562 Ap5b1 ENSMUST00000235542 ENSMUSP00000157409 TRANSLATION protein_coding stop - - 208.0 0.0 0.0 0.0 0.0 0.0 -3,-1 0.0316 3 -2.0 MINOR ENSMUSG00000049562 Ap5b1 ENSMUST00000096318 ENSMUSP00000094042 TRANSLATION protein_coding - CCDS29470.1 1 876.0 0.0 0.0 11.0 0.0 0.0 -3,-1 1.0 6 3.0 PRINCIPAL:1 ENSMUSG00000025047 Pdcd11 ENSMUST00000236656 - NO_TRANSLATION retained_intron ENSMUSG00000025047 Pdcd11 ENSMUST00000235871 - NO_TRANSLATION retained_intron ENSMUSG00000025047 Pdcd11 ENSMUST00000072141 ENSMUSP00000072008 TRANSLATION protein_coding - CCDS29888.1 1 1862.0 0.0 8.125 0.0 181.8 0.0 -4,-6 1.0 35 12.0 PRINCIPAL:1 ENSMUSG00000024986 Hhex ENSMUST00000128184 ENSMUSP00000133688 TRANSLATION protein_coding - - 2 98.0 0.0 0.83 1.1 34.2 0.0 -4,-2 0.0193 - 5.574 MINOR ENSMUSG00000024986 Hhex ENSMUST00000237452 - NO_TRANSLATION retained_intron ENSMUSG00000024986 Hhex ENSMUST00000025944 ENSMUSP00000025944 TRANSLATION protein_coding - CCDS29778.1 1 271.0 0.0 1.83 8.0 73.1 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024901 Peli3 ENSMUST00000143930 - NO_TRANSLATION retained_intron ENSMUSG00000024901 Peli3 ENSMUST00000139436 - NO_TRANSLATION retained_intron ENSMUSG00000024901 Peli3 ENSMUST00000146289 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024901 Peli3 ENSMUST00000133254 ENSMUSP00000118173 TRANSLATION protein_coding stop - 2 155.0 0.0 1.78 0.0 164.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024901 Peli3 ENSMUST00000025834 ENSMUSP00000025834 TRANSLATION protein_coding - CCDS37888.1 1 445.0 6.0 3.48 13.9 687.0 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000024901 Peli3 ENSMUST00000120475 ENSMUSP00000113193 TRANSLATION protein_coding - CCDS84408.1 1 411.0 6.0 2.48 3.2 543.4 0.0 -4,-5 0.0998 - 10.686 MINOR ENSMUSG00000024901 Peli3 ENSMUST00000133504 ENSMUSP00000157835 TRANSLATION protein_coding stop - 3 70.0 0.0 2.08 0.0 94.9 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000024927 Rela ENSMUST00000025867 ENSMUSP00000025867 TRANSLATION protein_coding - CCDS29473.1 1 549.0 0.0 7.98 0.0 360.6 0.0 -4,-5 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000024927 Rela ENSMUST00000236300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024927 Rela ENSMUST00000237838 ENSMUSP00000158430 TRANSLATION nonsense_mediated_decay - - - 121.0 0.0 2.132 0.0 148.1 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024927 Rela ENSMUST00000237863 ENSMUSP00000157385 TRANSLATION protein_coding stop - - 67.0 0.0 1.0 0.0 70.6 0.0 -1,-4 0.0 - -2.0 MINOR ENSMUSG00000024927 Rela ENSMUST00000238000 ENSMUSP00000157934 TRANSLATION nonsense_mediated_decay - - - 348.0 0.0 7.38 0.0 360.6 0.0 -4,-5 0.0292 12 -2.0 MINOR ENSMUSG00000024927 Rela ENSMUST00000237361 - NO_TRANSLATION retained_intron ENSMUSG00000024927 Rela ENSMUST00000238126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024731 Ms4a10 ENSMUST00000072748 ENSMUSP00000072531 TRANSLATION protein_coding - CCDS37919.1 1 267.0 0.0 0.84 0.0 37.1 3.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000024731 Ms4a10 ENSMUST00000190246 ENSMUSP00000140826 TRANSLATION protein_coding start - 2 104.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024731 Ms4a10 ENSMUST00000191343 ENSMUSP00000140111 TRANSLATION protein_coding - - 1 227.0 0.0 0.24 0.0 0.0 1.0 -4,-6 0.0 3 1.716 MINOR ENSMUSG00000024892 Pcx ENSMUST00000238089 ENSMUSP00000157436 TRANSLATION protein_coding stop - - 120.0 0.0 1.86 0.0 106.4 0.0 -4,0 0.0 7 -2.0 MINOR ENSMUSG00000024892 Pcx ENSMUST00000113825 ENSMUSP00000109456 TRANSLATION protein_coding - CCDS29430.1 1 1178.0 54.0 18.46 19.9 904.4 0.0 -4,0 1.0 49 18.0 ALTERNATIVE:1 ENSMUSG00000024892 Pcx ENSMUST00000223659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024892 Pcx ENSMUST00000225189 ENSMUSP00000152918 TRANSLATION protein_coding stop - - 116.0 0.0 1.86 0.0 92.8 0.0 -4,0 0.0 6 -2.0 MINOR ENSMUSG00000024892 Pcx ENSMUST00000068004 ENSMUSP00000063825 TRANSLATION protein_coding - CCDS50352.1 1 1179.0 54.0 18.46 19.9 904.4 0.0 -4,0 1.0 49 18.0 PRINCIPAL:5 ENSMUSG00000024892 Pcx ENSMUST00000224726 ENSMUSP00000153479 TRANSLATION protein_coding - CCDS29430.1 - 1178.0 54.0 18.46 19.9 904.4 0.0 -4,0 1.0 49 18.0 ALTERNATIVE:1 ENSMUSG00000024892 Pcx ENSMUST00000236457 ENSMUSP00000157492 TRANSLATION protein_coding stop - - 97.0 0.0 1.2 0.0 67.5 0.0 -4,0 0.0 5 -2.0 MINOR ENSMUSG00000096289 Or5b122 ENSMUST00000074180 ENSMUSP00000073811 TRANSLATION protein_coding - CCDS29665.1 - 315.0 0.0 2.0 12.5 184.8 8.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096289 Or5b122 ENSMUST00000216369 ENSMUSP00000150640 TRANSLATION protein_coding - - 5 272.0 0.0 1.0 0.0 173.8 7.0 -2,-4 0.0083 - 8.34 MINOR ENSMUSG00000096289 Or5b122 ENSMUST00000215567 ENSMUSP00000149111 TRANSLATION protein_coding - CCDS29665.1 5 315.0 0.0 2.0 12.5 184.8 8.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096289 Or5b122 ENSMUST00000216014 ENSMUSP00000150019 TRANSLATION protein_coding - CCDS29665.1 2 315.0 0.0 2.0 12.5 184.8 8.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096289 Or5b122 ENSMUST00000208104 ENSMUSP00000146646 TRANSLATION protein_coding - - 2 272.0 0.0 1.0 0.0 173.8 7.0 -2,-4 0.0083 - 8.34 MINOR ENSMUSG00000096289 Or5b122 ENSMUST00000217451 ENSMUSP00000150779 TRANSLATION protein_coding - CCDS29665.1 5 315.0 0.0 2.0 12.5 184.8 8.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024992 Pde6c ENSMUST00000112329 ENSMUSP00000107948 TRANSLATION protein_coding - CCDS50431.1 1 836.0 4.0 17.75 0.7 283.7 0.0 -4,-5 0.1887 - 9.64 MINOR ENSMUSG00000024992 Pde6c ENSMUST00000025956 ENSMUSP00000025956 TRANSLATION protein_coding - CCDS37971.1 1 861.0 4.0 18.5 0.0 364.7 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000016498 Pdcd1lg2 ENSMUST00000112576 ENSMUSP00000108195 TRANSLATION protein_coding - CCDS29736.1 1 247.0 0.0 2.0 0.0 24.6 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000016498 Pdcd1lg2 ENSMUST00000235164 ENSMUSP00000158422 TRANSLATION protein_coding - CCDS29736.1 - 247.0 0.0 2.0 0.0 24.6 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000025050 Pcgf6 ENSMUST00000235633 ENSMUSP00000157869 TRANSLATION nonsense_mediated_decay - - - 239.0 9.0 3.25 0.0 39.6 0.0 -4,-5 0.0282 - -2.0 MINOR ENSMUSG00000025050 Pcgf6 ENSMUST00000236339 - NO_TRANSLATION retained_intron ENSMUSG00000025050 Pcgf6 ENSMUST00000235370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025050 Pcgf6 ENSMUST00000026032 ENSMUSP00000026032 TRANSLATION protein_coding - CCDS29885.1 1 353.0 9.0 3.25 0.4 39.6 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000025075 Habp2 ENSMUST00000171341 ENSMUSP00000126235 TRANSLATION nonsense_mediated_decay - - 5 274.0 10.0 4.41 0.0 131.1 0.0 3,-1 0.0014 4 -2.0 MINOR ENSMUSG00000025075 Habp2 ENSMUST00000165522 ENSMUSP00000130809 TRANSLATION nonsense_mediated_decay start - 5 124.0 3.0 1.095 0.0 52.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025075 Habp2 ENSMUST00000163502 ENSMUSP00000128964 TRANSLATION protein_coding start/stop - 5 220.0 9.0 3.91 0.0 161.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025075 Habp2 ENSMUST00000078284 ENSMUSP00000077402 TRANSLATION protein_coding - - 5 554.0 22.0 8.71 0.0 346.3 0.0 3,-1 0.2377 7 14.0 ALTERNATIVE:2 ENSMUSG00000025075 Habp2 ENSMUST00000095948 ENSMUSP00000093641 TRANSLATION protein_coding - CCDS50475.1 1 517.0 22.0 8.71 0.0 346.3 0.0 3,-1 1.0 7 14.0 PRINCIPAL:2 ENSMUSG00000025075 Habp2 ENSMUST00000165407 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025075 Habp2 ENSMUST00000166049 ENSMUSP00000132444 TRANSLATION protein_coding - - 5 549.0 22.0 8.71 0.0 346.3 0.0 3,-1 0.2399 7 14.0 ALTERNATIVE:2 ENSMUSG00000044220 Nkx2-3 ENSMUST00000057178 ENSMUSP00000050933 TRANSLATION protein_coding - CCDS29833.1 1 362.0 0.0 0.5 10.1 72.4 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000025196 Cpn1 ENSMUST00000131882 - NO_TRANSLATION retained_intron ENSMUSG00000025196 Cpn1 ENSMUST00000026210 ENSMUSP00000026210 TRANSLATION protein_coding - CCDS29840.1 1 457.0 8.0 7.8 0.0 321.4 0.0 0,-3 1.0 11 18.0 PRINCIPAL:1 ENSMUSG00000024897 Apba1 ENSMUST00000025830 ENSMUSP00000025830 TRANSLATION protein_coding - CCDS50407.1 1 842.0 0.0 6.83 0.1 278.0 0.0 -4,-5 1.0 11 8.0 PRINCIPAL:2 ENSMUSG00000024897 Apba1 ENSMUST00000237688 ENSMUSP00000157770 TRANSLATION protein_coding - - - 452.0 0.0 6.83 0.0 278.0 0.0 -4,-5 0.0662 6 8.0 ALTERNATIVE:2 ENSMUSG00000024668 Sdhaf2 ENSMUST00000235853 ENSMUSP00000158361 TRANSLATION nonsense_mediated_decay - - - 42.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000024668 Sdhaf2 ENSMUST00000235486 - NO_TRANSLATION retained_intron ENSMUSG00000024668 Sdhaf2 ENSMUST00000237827 ENSMUSP00000157391 TRANSLATION protein_coding - - - 135.0 0.0 2.179 0.0 77.3 0.0 -3,1 0.0003 2 9.546 MINOR ENSMUSG00000024668 Sdhaf2 ENSMUST00000237847 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024668 Sdhaf2 ENSMUST00000236455 ENSMUSP00000158166 TRANSLATION protein_coding - - - 134.0 0.0 2.205 0.0 77.1 0.0 -3,1 0.0006 2 9.576 MINOR ENSMUSG00000024668 Sdhaf2 ENSMUST00000235222 ENSMUSP00000157533 TRANSLATION protein_coding - - - 166.0 0.0 3.08 1.7 86.8 0.0 -4,-1 0.3048 4 12.207 MINOR ENSMUSG00000024668 Sdhaf2 ENSMUST00000025570 ENSMUSP00000025570 TRANSLATION protein_coding - CCDS29578.1 1 164.0 0.0 3.08 11.1 86.8 0.0 -3,1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000024668 Sdhaf2 ENSMUST00000235446 - NO_TRANSLATION retained_intron ENSMUSG00000024668 Sdhaf2 ENSMUST00000235243 ENSMUSP00000157529 TRANSLATION nonsense_mediated_decay start - - 44.0 0.0 0.0 0.0 0.0 0.0 -2,2 0.0004 - -2.0 MINOR ENSMUSG00000018822 Sfrp5 ENSMUST00000018966 ENSMUSP00000018966 TRANSLATION protein_coding - CCDS29826.1 1 314.0 0.0 0.6485 0.1 143.9 0.0 3,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000037418 Best1 ENSMUST00000144273 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037418 Best1 ENSMUST00000117346 ENSMUSP00000113053 TRANSLATION protein_coding - CCDS29568.1 5 551.0 0.0 7.9 0.0 355.4 3.0 -4,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000037418 Best1 ENSMUST00000235983 ENSMUSP00000157419 TRANSLATION protein_coding stop - - 420.0 0.0 7.9 0.0 355.4 3.0 -4,-2 0.1578 - -2.0 MINOR ENSMUSG00000044026 Slc35g1 ENSMUST00000236865 - NO_TRANSLATION retained_intron ENSMUSG00000044026 Slc35g1 ENSMUST00000054098 ENSMUSP00000061282 TRANSLATION protein_coding - CCDS29787.1 1 368.0 0.0 1.8 3.7 20.0 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000038812 Trmt112 ENSMUST00000088257 ENSMUSP00000085591 TRANSLATION protein_coding - CCDS29508.1 1 125.0 0.0 3.75 21.6 63.3 0.0 -4,0 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038812 Trmt112 ENSMUST00000116551 ENSMUSP00000112250 TRANSLATION protein_coding - CCDS29508.1 1 125.0 0.0 3.75 21.6 63.3 0.0 -4,0 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038812 Trmt112 ENSMUST00000174786 ENSMUSP00000134000 TRANSLATION protein_coding - - 1 108.0 0.0 2.95 0.0 31.9 0.0 -4,0 0.0 2 7.422 MINOR ENSMUSG00000038812 Trmt112 ENSMUST00000172869 - NO_TRANSLATION retained_intron ENSMUSG00000024837 Dmrt1 ENSMUST00000025755 ENSMUSP00000025755 TRANSLATION protein_coding - CCDS29717.1 1 374.0 8.0 1.3 6.9 195.8 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000024837 Dmrt1 ENSMUST00000160814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024837 Dmrt1 ENSMUST00000087525 ENSMUSP00000084803 TRANSLATION protein_coding - - 5 257.0 8.0 1.3 0.0 150.9 0.0 -4,-5 0.0165 - 15.306 MINOR ENSMUSG00000024660 Incenp ENSMUST00000237655 - NO_TRANSLATION retained_intron ENSMUSG00000024660 Incenp ENSMUST00000237439 ENSMUSP00000157547 TRANSLATION protein_coding - - - 880.0 0.0 2.7 0.0 131.0 0.0 -4,-7 0.2711 6 8.0 ALTERNATIVE:2 ENSMUSG00000024660 Incenp ENSMUST00000025562 ENSMUSP00000025562 TRANSLATION protein_coding - CCDS37912.1 1 876.0 0.0 2.7 0.0 131.0 0.0 -4,-7 1.0 6 8.0 PRINCIPAL:2 ENSMUSG00000024660 Incenp ENSMUST00000236533 - NO_TRANSLATION retained_intron ENSMUSG00000024660 Incenp ENSMUST00000235358 - NO_TRANSLATION retained_intron ENSMUSG00000024660 Incenp ENSMUST00000237725 ENSMUSP00000158216 TRANSLATION protein_coding stop - - 172.0 0.0 1.0 0.0 61.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024660 Incenp ENSMUST00000238004 ENSMUSP00000158010 TRANSLATION protein_coding start - - 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024660 Incenp ENSMUST00000238129 - NO_TRANSLATION retained_intron ENSMUSG00000024660 Incenp ENSMUST00000237147 ENSMUSP00000157801 TRANSLATION protein_coding stop - - 138.0 0.0 1.0 0.0 61.7 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000168330 ENSMUSP00000130003 TRANSLATION nonsense_mediated_decay start - 5 70.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000167855 ENSMUSP00000132194 TRANSLATION protein_coding stop - 3 153.0 26.0 4.25 0.0 87.3 0.0 -4,-7 0.0006 2 -2.0 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000165485 ENSMUSP00000133016 TRANSLATION protein_coding - CCDS29466.1 1 443.0 47.0 11.88 8.9 207.6 0.0 4,-1 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000024909 Efemp2 ENSMUST00000169943 ENSMUSP00000126477 TRANSLATION nonsense_mediated_decay - - 5 82.0 0.0 0.55 0.0 0.0 0.0 4,-1 0.0007 - -2.0 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000164204 ENSMUSP00000128414 TRANSLATION protein_coding start - 5 120.0 8.0 1.8 0.0 32.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000070118 ENSMUSP00000064719 TRANSLATION protein_coding - CCDS50358.1 1 462.0 47.0 11.88 1.1 207.6 0.0 -1,-4 0.2838 8 18.039 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000166558 - NO_TRANSLATION retained_intron ENSMUSG00000024909 Efemp2 ENSMUST00000166253 ENSMUSP00000127312 TRANSLATION protein_coding stop - 5 280.0 30.0 7.13 0.0 129.6 0.0 4,-1 0.0017 5 -2.0 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000236109 - NO_TRANSLATION retained_intron ENSMUSG00000024909 Efemp2 ENSMUST00000167304 ENSMUSP00000129982 TRANSLATION protein_coding stop - 5 128.0 11.0 2.8 0.0 32.3 0.0 4,-1 0.0 3 -2.0 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000166303 ENSMUSP00000128827 TRANSLATION protein_coding - CCDS29466.1 5 443.0 47.0 11.88 8.9 207.6 0.0 4,-1 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000024909 Efemp2 ENSMUST00000236518 ENSMUSP00000158144 TRANSLATION protein_coding - - - 404.0 39.0 10.88 0.1 174.0 0.0 4,-1 0.0404 7 8.652 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000167920 - NO_TRANSLATION retained_intron ENSMUSG00000024909 Efemp2 ENSMUST00000235523 ENSMUSP00000158440 TRANSLATION protein_coding - - - 455.0 47.0 11.88 0.0 207.6 0.0 2,-1 0.1688 8 18.0 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000164388 ENSMUSP00000131979 TRANSLATION protein_coding start - 5 157.0 10.0 4.33 0.0 57.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000167371 ENSMUSP00000129746 TRANSLATION protein_coding - - 5 402.0 37.0 10.88 0.1 161.9 0.0 4,-1 0.0353 8 7.26 MINOR ENSMUSG00000024909 Efemp2 ENSMUST00000167827 ENSMUSP00000127478 TRANSLATION protein_coding stop - 5 191.0 33.0 5.5 0.0 117.6 0.0 -4,-7 0.0009 2 -2.0 MINOR ENSMUSG00000024943 Smc5 ENSMUST00000224723 - NO_TRANSLATION retained_intron ENSMUSG00000024943 Smc5 ENSMUST00000226111 ENSMUSP00000153420 TRANSLATION protein_coding - - - 1011.0 7.0 5.0475 0.0 47.4 0.0 -4,-7 0.0341 17 10.986 MINOR ENSMUSG00000024943 Smc5 ENSMUST00000224008 - NO_TRANSLATION retained_intron ENSMUSG00000024943 Smc5 ENSMUST00000087556 ENSMUSP00000084837 TRANSLATION protein_coding - - 1 1101.0 8.0 5.1455 9.1 65.2 0.0 -4,-7 0.9201 18 14.934 PRINCIPAL:3 ENSMUSG00000024943 Smc5 ENSMUST00000223934 ENSMUSP00000153364 TRANSLATION protein_coding - CCDS37936.1 - 1087.0 8.0 5.1795 8.4 62.8 0.0 -4,-7 1.0 17 14.742 ALTERNATIVE:1 ENSMUSG00000024943 Smc5 ENSMUST00000224441 - NO_TRANSLATION retained_intron ENSMUSG00000054999 Naaladl1 ENSMUST00000044451 ENSMUSP00000044231 TRANSLATION protein_coding - CCDS29494.1 2 745.0 10.0 16.1 11.6 191.0 0.0 1,-3 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000025017 Pik3ap1 ENSMUST00000235978 - NO_TRANSLATION retained_intron ENSMUSG00000025017 Pik3ap1 ENSMUST00000059672 ENSMUSP00000052777 TRANSLATION protein_coding - CCDS37987.1 1 811.0 0.0 3.5 8.2 178.0 0.0 -4,-6 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000052595 A1cf ENSMUST00000075838 ENSMUSP00000075235 TRANSLATION protein_coding - CCDS37959.1 1 595.0 0.0 6.23 15.4 224.3 0.0 -4,-5 1.0 16 11.512 PRINCIPAL:3 ENSMUSG00000052595 A1cf ENSMUST00000224400 ENSMUSP00000153397 TRANSLATION protein_coding - - - 300.0 0.0 4.4 0.0 108.2 0.0 -4,-7 0.001 8 2.912 MINOR ENSMUSG00000052595 A1cf ENSMUST00000224564 ENSMUSP00000153465 TRANSLATION protein_coding - - - 384.0 0.0 6.23 0.0 135.1 0.0 -4,-5 0.0263 12 7.142 MINOR ENSMUSG00000052595 A1cf ENSMUST00000224304 ENSMUSP00000153542 TRANSLATION protein_coding - - - 587.0 0.0 6.23 17.4 224.3 0.0 -4,-5 0.8786 15 12.0 ALTERNATIVE:1 ENSMUSG00000052595 A1cf ENSMUST00000225165 - NO_TRANSLATION retained_intron ENSMUSG00000042248 Cyp2c37 ENSMUST00000049178 ENSMUSP00000045362 TRANSLATION protein_coding - CCDS29799.1 1 490.0 34.0 9.0 11.4 529.0 0.0 1,-3 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000025066 Sfr1 ENSMUST00000099353 ENSMUSP00000096954 TRANSLATION protein_coding - CCDS38019.1 1 319.0 0.0 1.5 0.0 234.5 0.0 -4,-5 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000025066 Sfr1 ENSMUST00000237695 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024958 Gpr137 ENSMUST00000235518 ENSMUSP00000157489 TRANSLATION nonsense_mediated_decay - - - 263.0 0.0 0.0 0.0 0.0 11.0 -4,-5 0.0345 - -2.0 MINOR ENSMUSG00000024958 Gpr137 ENSMUST00000235237 ENSMUSP00000157604 TRANSLATION nonsense_mediated_decay - - - 236.0 0.0 0.0 0.0 0.0 11.0 -4,-5 0.0345 - -2.0 MINOR ENSMUSG00000024958 Gpr137 ENSMUST00000237911 - NO_TRANSLATION retained_intron ENSMUSG00000024958 Gpr137 ENSMUST00000238128 ENSMUSP00000158431 TRANSLATION nonsense_mediated_decay start - - 162.0 0.0 0.0 0.0 0.0 11.0 -2,-5 0.0262 - -2.0 MINOR ENSMUSG00000024958 Gpr137 ENSMUST00000238183 ENSMUSP00000158230 TRANSLATION protein_coding start - - 318.0 0.0 0.0 0.0 0.0 8.0 1,-3 0.0874 2 -2.0 MINOR ENSMUSG00000024958 Gpr137 ENSMUST00000235363 ENSMUSP00000157846 TRANSLATION protein_coding stop - - 85.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0079 - -2.0 MINOR ENSMUSG00000024958 Gpr137 ENSMUST00000099774 ENSMUSP00000097362 TRANSLATION protein_coding - CCDS50370.1 1 214.0 0.0 0.0 0.0 0.0 4.0 -4,-6 0.1287 2 0.0 MINOR ENSMUSG00000024958 Gpr137 ENSMUST00000099782 ENSMUSP00000097370 TRANSLATION protein_coding - CCDS50372.1 1 382.0 0.0 0.0 0.0 0.0 8.0 -1,0 0.2344 2 0.0 MINOR ENSMUSG00000024958 Gpr137 ENSMUST00000166115 ENSMUSP00000130969 TRANSLATION protein_coding - CCDS29512.1 1 396.0 0.0 0.0 11.6 0.0 19.0 -4,-5 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000024958 Gpr137 ENSMUST00000236348 ENSMUSP00000157999 TRANSLATION nonsense_mediated_decay - - - 54.0 0.0 0.0 0.0 0.0 0.0 0,1 0.0342 - -2.0 MINOR ENSMUSG00000024958 Gpr137 ENSMUST00000235881 ENSMUSP00000157950 TRANSLATION nonsense_mediated_decay - - - 131.0 0.0 0.0 0.0 0.0 0.0 -1,0 0.0246 - -2.0 MINOR ENSMUSG00000024958 Gpr137 ENSMUST00000237934 ENSMUSP00000158264 TRANSLATION protein_coding - CCDS29512.1 - 396.0 0.0 0.0 11.6 0.0 19.0 -4,-5 1.0 2 3.0 PRINCIPAL:1 ENSMUSG00000024958 Gpr137 ENSMUST00000099776 ENSMUSP00000097364 TRANSLATION protein_coding - CCDS50371.1 1 304.0 0.0 0.0 0.0 0.0 15.0 -4,-5 0.1342 2 0.0 MINOR ENSMUSG00000063698 Sfxn4 ENSMUST00000135808 ENSMUSP00000118743 TRANSLATION protein_coding - CCDS29943.1 1 313.0 0.0 8.82 4.1 217.9 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000063698 Sfxn4 ENSMUST00000124921 ENSMUSP00000118708 TRANSLATION nonsense_mediated_decay - - 1 115.0 0.0 2.33 0.0 43.5 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000063698 Sfxn4 ENSMUST00000080806 ENSMUSP00000079621 TRANSLATION nonsense_mediated_decay - - 1 110.0 0.0 2.33 0.0 44.5 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000055933 Oosp3 ENSMUST00000069760 ENSMUSP00000064913 TRANSLATION protein_coding - CCDS29608.1 1 195.0 0.0 2.2 0.0 0.0 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000055933 Oosp3 ENSMUST00000119053 ENSMUSP00000112874 TRANSLATION protein_coding - - 1 97.0 0.0 0.7 0.0 0.0 0.0 -4,-6 0.0089 - 1.908 MINOR ENSMUSG00000024679 Ms4a6d ENSMUST00000025582 ENSMUSP00000025582 TRANSLATION protein_coding - CCDS29603.1 1 247.0 0.0 3.14 4.0 137.7 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024679 Ms4a6d ENSMUST00000155669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024679 Ms4a6d ENSMUST00000125291 ENSMUSP00000115142 TRANSLATION protein_coding - - 3 139.0 0.0 1.64 0.1 68.4 2.0 1,-3 0.0039 - 4.842 MINOR ENSMUSG00000024679 Ms4a6d ENSMUST00000135351 - NO_TRANSLATION retained_intron ENSMUSG00000025189 Cnnm1 ENSMUST00000223787 ENSMUSP00000153472 TRANSLATION protein_coding - - - 972.0 14.0 3.25 2.4 106.9 4.0 -1,1 0.5994 15 17.5 MINOR ENSMUSG00000025189 Cnnm1 ENSMUST00000225191 - NO_TRANSLATION retained_intron ENSMUSG00000025189 Cnnm1 ENSMUST00000165311 ENSMUSP00000131830 TRANSLATION protein_coding - CCDS50442.1 1 951.0 14.0 4.0 2.3 106.9 4.0 -1,1 1.0 14 18.929 PRINCIPAL:1 ENSMUSG00000025189 Cnnm1 ENSMUST00000225254 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046585 Cfap58 ENSMUST00000066308 ENSMUSP00000070533 TRANSLATION protein_coding - CCDS50466.1 1 873.0 0.0 0.0 9.6 0.0 0.0 -4,-5 1.0 3 3.0 PRINCIPAL:1 ENSMUSG00000046585 Cfap58 ENSMUST00000238163 ENSMUSP00000158257 TRANSLATION protein_coding - - - 147.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0114 2 0.0 MINOR ENSMUSG00000013662 Atad1 ENSMUST00000236546 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013662 Atad1 ENSMUST00000237933 - NO_TRANSLATION retained_intron ENSMUSG00000013662 Atad1 ENSMUST00000070210 ENSMUSP00000069962 TRANSLATION protein_coding - CCDS29752.1 1 361.0 13.0 5.78 20.0 124.0 1.0 -4,-7 1.0 14 21.976 PRINCIPAL:1 ENSMUSG00000013662 Atad1 ENSMUST00000235142 ENSMUSP00000157972 TRANSLATION protein_coding - - - 276.0 13.0 5.3 0.0 124.4 0.0 -4,-5 0.0058 13 17.04 MINOR ENSMUSG00000013662 Atad1 ENSMUST00000236701 ENSMUSP00000157709 TRANSLATION nonsense_mediated_decay - - - 303.0 11.0 4.6 0.0 124.0 1.0 -4,-7 0.0158 9 -2.0 MINOR ENSMUSG00000013662 Atad1 ENSMUST00000238016 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000013662 Atad1 ENSMUST00000235412 ENSMUSP00000157842 TRANSLATION protein_coding - CCDS29752.1 - 361.0 13.0 5.78 20.0 124.0 1.0 -4,-7 1.0 14 21.976 PRINCIPAL:1 ENSMUSG00000013662 Atad1 ENSMUST00000236011 ENSMUSP00000157772 TRANSLATION protein_coding - CCDS29752.1 - 361.0 13.0 5.78 20.0 124.0 1.0 -4,-7 1.0 14 21.976 PRINCIPAL:1 ENSMUSG00000013662 Atad1 ENSMUST00000237752 ENSMUSP00000157803 TRANSLATION protein_coding - - - 322.0 13.0 5.28 0.0 124.0 1.0 -4,-7 0.0196 11 16.974 MINOR ENSMUSG00000013662 Atad1 ENSMUST00000236985 ENSMUSP00000158237 TRANSLATION protein_coding - CCDS29752.1 - 361.0 13.0 5.78 20.0 124.0 1.0 -4,-7 1.0 14 21.976 PRINCIPAL:1 ENSMUSG00000071655 Ubxn1 ENSMUST00000238036 ENSMUSP00000157971 TRANSLATION protein_coding - CCDS29553.1 - 297.0 0.0 2.65 10.3 118.4 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000071655 Ubxn1 ENSMUST00000237220 - NO_TRANSLATION retained_intron ENSMUSG00000071655 Ubxn1 ENSMUST00000096255 ENSMUSP00000093974 TRANSLATION protein_coding - - 1 262.0 0.0 1.4 1.5 83.8 0.0 -4,-5 0.0445 8 7.254 MINOR ENSMUSG00000071655 Ubxn1 ENSMUST00000166407 ENSMUSP00000133250 TRANSLATION protein_coding - CCDS29553.1 1 297.0 0.0 2.65 10.3 118.4 0.0 -4,-5 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000052942 Glis3 ENSMUST00000162022 ENSMUSP00000124635 TRANSLATION protein_coding - CCDS37947.1 1 935.0 20.0 2.4 4.6 53.5 0.0 -4,-2 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000052942 Glis3 ENSMUST00000159639 - NO_TRANSLATION retained_intron ENSMUSG00000052942 Glis3 ENSMUST00000112612 ENSMUSP00000108231 TRANSLATION protein_coding - - 1 671.0 20.0 2.4 0.0 53.5 0.0 -4,-2 0.0884 - 18.0 MINOR ENSMUSG00000052942 Glis3 ENSMUST00000161026 - NO_TRANSLATION retained_intron ENSMUSG00000052942 Glis3 ENSMUST00000161328 ENSMUSP00000125721 TRANSLATION protein_coding stop - 5 245.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0012 - -2.0 MINOR ENSMUSG00000052942 Glis3 ENSMUST00000159520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052942 Glis3 ENSMUST00000159178 ENSMUSP00000124823 TRANSLATION protein_coding stop - 5 245.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0012 - -2.0 MINOR ENSMUSG00000052942 Glis3 ENSMUST00000160376 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052942 Glis3 ENSMUST00000162873 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052942 Glis3 ENSMUST00000065113 ENSMUSP00000066953 TRANSLATION nonsense_mediated_decay - - 1 142.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000025036 Sfxn2 ENSMUST00000236845 ENSMUSP00000157818 TRANSLATION nonsense_mediated_decay - - - 183.0 0.0 3.45 0.0 238.5 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000025036 Sfxn2 ENSMUST00000237001 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025036 Sfxn2 ENSMUST00000238124 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025036 Sfxn2 ENSMUST00000026011 ENSMUSP00000026011 TRANSLATION protein_coding - CCDS29880.1 1 322.0 0.0 5.945 22.1 452.3 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000025036 Sfxn2 ENSMUST00000237310 - NO_TRANSLATION retained_intron ENSMUSG00000052387 Trpm3 ENSMUST00000099569 ENSMUSP00000097164 TRANSLATION protein_coding - - 1 1579.0 0.0 14.432 2.2 151.5 12.0 -4,-6 0.245 17 5.372 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000074770 ENSMUSP00000074328 TRANSLATION protein_coding - CCDS29704.1 1 1711.0 0.0 15.725 0.0 151.5 12.0 -4,-5 0.4791 18 7.436 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000238159 ENSMUSP00000157422 TRANSLATION nonsense_mediated_decay - - - 783.0 0.0 9.61 0.0 0.0 0.0 -4,-5 0.0036 7 -2.0 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000237820 ENSMUSP00000157909 TRANSLATION protein_coding - CCDS29702.1 - 1721.0 0.0 15.957 1.1 150.2 12.0 -4,-5 0.646 18 7.942 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000236787 - NO_TRANSLATION retained_intron ENSMUSG00000052387 Trpm3 ENSMUST00000235712 ENSMUSP00000157917 TRANSLATION protein_coding - - - 262.0 0.0 2.69 0.0 0.0 0.0 -4,-6 0.0 3 0.0 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000037901 ENSMUSP00000042184 TRANSLATION protein_coding - CCDS29705.1 1 1337.0 0.0 15.857 2.9 151.5 12.0 -4,-5 0.6255 11 8.526 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000237470 ENSMUSP00000158191 TRANSLATION protein_coding stop - - 142.0 0.0 1.94 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000236009 - NO_TRANSLATION retained_intron ENSMUSG00000052387 Trpm3 ENSMUST00000235780 ENSMUSP00000158494 TRANSLATION protein_coding - - - 1691.0 0.0 15.225 0.0 151.5 12.0 -4,-5 0.2341 17 6.434 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000236372 ENSMUSP00000157511 TRANSLATION protein_coding - - - 1692.0 0.0 14.862 0.0 151.5 12.0 -4,-5 0.2176 18 5.708 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000237421 - NO_TRANSLATION retained_intron ENSMUSG00000052387 Trpm3 ENSMUST00000099564 ENSMUSP00000097160 TRANSLATION protein_coding - CCDS37935.1 1 958.0 0.0 11.95 0.0 42.4 10.0 -4,-6 0.0393 7 0.0 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000087576 ENSMUSP00000084857 TRANSLATION protein_coding - CCDS29703.1 1 1721.0 0.0 15.857 5.6 151.5 12.0 -4,-5 1.0 18 9.7 PRINCIPAL:2 ENSMUSG00000052387 Trpm3 ENSMUST00000238066 ENSMUSP00000157646 TRANSLATION protein_coding - - - 1689.0 0.0 15.307 0.9 151.5 12.0 -4,-5 0.2935 17 6.602 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000235522 ENSMUSP00000158045 TRANSLATION protein_coding - - - 1731.0 0.0 16.007 1.0 150.2 12.0 -4,-5 0.2858 18 8.0 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000236312 ENSMUSP00000157673 TRANSLATION protein_coding - - - 1699.0 0.0 15.675 0.0 151.5 12.0 -4,-5 0.2489 18 7.334 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000235952 - NO_TRANSLATION retained_intron ENSMUSG00000052387 Trpm3 ENSMUST00000236180 - NO_TRANSLATION retained_intron ENSMUSG00000052387 Trpm3 ENSMUST00000237223 ENSMUSP00000158135 TRANSLATION protein_coding - - - 848.0 0.0 9.512 0.0 151.5 12.0 -4,-5 0.0472 6 2.0 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000236804 ENSMUSP00000157503 TRANSLATION protein_coding - - - 1697.0 0.0 15.675 0.0 151.5 12.0 -4,-5 0.2478 18 7.334 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000099566 ENSMUSP00000097162 TRANSLATION protein_coding - CCDS50404.1 1 234.0 0.0 3.44 3.6 0.0 0.0 -4,-6 0.2929 3 1.13 MINOR ENSMUSG00000052387 Trpm3 ENSMUST00000237357 ENSMUSP00000157607 TRANSLATION protein_coding - - - 1709.0 0.0 15.807 4.0 151.5 12.0 -4,-5 0.7224 18 8.902 ALTERNATIVE:2 ENSMUSG00000052387 Trpm3 ENSMUST00000237455 - NO_TRANSLATION retained_intron ENSMUSG00000043969 Emx2 ENSMUST00000174573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043969 Emx2 ENSMUST00000062216 ENSMUSP00000053361 TRANSLATION protein_coding - CCDS29937.1 1 253.0 0.0 2.0 36.9 75.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000043969 Emx2 ENSMUST00000174353 ENSMUSP00000140271 TRANSLATION protein_coding start - 5 69.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000025083 Afap1l2 ENSMUST00000111584 ENSMUSP00000107210 TRANSLATION protein_coding - CCDS50477.1 1 843.0 0.0 1.6 4.8 73.1 0.0 -4,-7 1.0 18 10.0 PRINCIPAL:4 ENSMUSG00000025083 Afap1l2 ENSMUST00000225394 ENSMUSP00000153082 TRANSLATION protein_coding start/stop - - 31.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025083 Afap1l2 ENSMUST00000122359 ENSMUSP00000112387 TRANSLATION protein_coding - CCDS29924.1 1 769.0 0.0 1.6 3.0 73.1 0.0 -4,-5 0.7028 15 9.052 ALTERNATIVE:2 ENSMUSG00000025083 Afap1l2 ENSMUST00000155467 - NO_TRANSLATION retained_intron ENSMUSG00000025083 Afap1l2 ENSMUST00000148049 ENSMUSP00000120490 TRANSLATION protein_coding stop - 1 264.0 0.0 0.0 0.0 37.1 0.0 -4,-5 0.0013 3 -2.0 MINOR ENSMUSG00000025083 Afap1l2 ENSMUST00000118800 ENSMUSP00000113745 TRANSLATION protein_coding - CCDS50476.1 1 825.0 0.0 1.6 3.8 73.1 0.0 -4,-5 0.9083 18 9.474 ALTERNATIVE:2 ENSMUSG00000025083 Afap1l2 ENSMUST00000132851 - NO_TRANSLATION retained_intron ENSMUSG00000025083 Afap1l2 ENSMUST00000126964 ENSMUSP00000123400 TRANSLATION protein_coding stop - 2 134.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024973 Plaat5 ENSMUST00000131326 - NO_TRANSLATION retained_intron ENSMUSG00000024973 Plaat5 ENSMUST00000239394 ENSMUSP00000159309 TRANSLATION protein_coding - CCDS29530.1 - 294.0 0.0 1.72 0.1 121.0 0.0 -4,-2 0.4075 - 6.0 ALTERNATIVE:2 ENSMUSG00000024973 Plaat5 ENSMUST00000148558 ENSMUSP00000118096 TRANSLATION protein_coding stop - 1 316.0 0.0 1.64 0.0 121.0 0.0 -4,-2 0.0641 - -2.0 MINOR ENSMUSG00000024973 Plaat5 ENSMUST00000025929 ENSMUSP00000025929 TRANSLATION protein_coding - - 1 270.0 0.0 1.72 1.9 121.0 0.0 -4,-2 1.0 - 7.0 PRINCIPAL:2 ENSMUSG00000024677 Ms4a6b ENSMUST00000161283 ENSMUSP00000124277 TRANSLATION nonsense_mediated_decay start - 5 83.0 3.0 1.5 0.0 67.6 1.0 1,-3 0.0039 - -2.0 MINOR ENSMUSG00000024677 Ms4a6b ENSMUST00000163078 ENSMUSP00000124685 TRANSLATION protein_coding - CCDS29601.1 5 244.0 0.0 3.5 4.7 140.4 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024677 Ms4a6b ENSMUST00000161157 - NO_TRANSLATION retained_intron ENSMUSG00000024677 Ms4a6b ENSMUST00000025580 ENSMUSP00000025580 TRANSLATION protein_coding - CCDS29601.1 1 244.0 0.0 3.5 4.7 140.4 4.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024677 Ms4a6b ENSMUST00000159587 - NO_TRANSLATION retained_intron ENSMUSG00000025024 Smndc1 ENSMUST00000236245 ENSMUSP00000158182 TRANSLATION protein_coding stop - - 83.0 0.0 0.8 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025024 Smndc1 ENSMUST00000237529 ENSMUSP00000157540 TRANSLATION protein_coding - CCDS29902.1 - 238.0 5.0 2.13 33.9 57.5 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000025024 Smndc1 ENSMUST00000025997 ENSMUSP00000025997 TRANSLATION protein_coding - CCDS29902.1 1 238.0 5.0 2.13 33.9 57.5 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000025024 Smndc1 ENSMUST00000235830 ENSMUSP00000158001 TRANSLATION nonsense_mediated_decay - - - 145.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025024 Smndc1 ENSMUST00000236962 ENSMUSP00000157887 TRANSLATION nonsense_mediated_decay - - - 102.0 1.0 0.8 0.0 24.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000048029 Eno4 ENSMUST00000202382 ENSMUSP00000144656 TRANSLATION protein_coding start - 5 431.0 2.0 5.0125 0.0 72.5 0.0 -4,-5 0.0309 1 -2.0 MINOR ENSMUSG00000048029 Eno4 ENSMUST00000201123 ENSMUSP00000143831 TRANSLATION nonsense_mediated_decay start - 3 177.0 1.0 1.5625 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000048029 Eno4 ENSMUST00000200910 ENSMUSP00000144272 TRANSLATION protein_coding - CCDS79725.1 5 618.0 2.0 3.2775 1.8 98.5 0.0 -4,-5 1.0 2 11.532 PRINCIPAL:1 ENSMUSG00000036192 Rorb ENSMUST00000112828 ENSMUSP00000108447 TRANSLATION protein_coding - CCDS79697.1 1 385.0 12.0 6.0 0.0 85.7 0.0 -4,-7 0.0578 3 3.168 MINOR ENSMUSG00000036192 Rorb ENSMUST00000040153 ENSMUSP00000047597 TRANSLATION protein_coding - CCDS37933.1 1 470.0 20.0 7.75 5.7 199.0 0.0 -4,-5 0.5021 4 18.868 MINOR ENSMUSG00000036192 Rorb ENSMUST00000147907 - NO_TRANSLATION retained_intron ENSMUSG00000036192 Rorb ENSMUST00000149635 - NO_TRANSLATION retained_intron ENSMUSG00000036192 Rorb ENSMUST00000112832 ENSMUSP00000108451 TRANSLATION protein_coding - CCDS37932.1 1 459.0 20.0 7.75 22.7 199.0 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000025014 Dntt ENSMUST00000237959 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025014 Dntt ENSMUST00000112200 ENSMUSP00000107819 TRANSLATION protein_coding - CCDS37984.1 1 510.0 5.0 10.25 11.2 234.9 0.0 -4,-2 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000025014 Dntt ENSMUST00000051806 ENSMUSP00000062078 TRANSLATION protein_coding - CCDS29807.1 1 530.0 5.0 10.25 0.0 234.1 0.0 -4,-2 0.1843 2 16.952 MINOR ENSMUSG00000024926 Kat5 ENSMUST00000236883 ENSMUSP00000157766 TRANSLATION nonsense_mediated_decay - - - 492.0 25.0 6.56 0.0 251.1 0.0 -4,-5 0.0123 4 -2.0 MINOR ENSMUSG00000024926 Kat5 ENSMUST00000236964 - NO_TRANSLATION retained_intron ENSMUSG00000024926 Kat5 ENSMUST00000236229 ENSMUSP00000158391 TRANSLATION protein_coding - - - 461.0 28.0 8.98 13.0 351.6 0.0 -4,-5 0.7833 4 18.0 ALTERNATIVE:1 ENSMUSG00000024926 Kat5 ENSMUST00000237072 ENSMUSP00000157522 TRANSLATION protein_coding start - - 90.0 9.0 1.55 0.0 72.6 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024926 Kat5 ENSMUST00000235796 ENSMUSP00000157995 TRANSLATION protein_coding start/stop - - 157.0 7.0 3.0 0.0 97.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024926 Kat5 ENSMUST00000235788 - NO_TRANSLATION retained_intron ENSMUSG00000024926 Kat5 ENSMUST00000236729 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024926 Kat5 ENSMUST00000235701 ENSMUSP00000158181 TRANSLATION protein_coding - - - 494.0 28.0 8.98 9.8 351.6 0.0 -4,-6 0.7322 4 16.932 ALTERNATIVE:1 ENSMUSG00000024926 Kat5 ENSMUST00000236264 ENSMUSP00000157904 TRANSLATION protein_coding stop - - 114.0 0.0 2.5 0.0 69.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024926 Kat5 ENSMUST00000236062 - NO_TRANSLATION retained_intron ENSMUSG00000024926 Kat5 ENSMUST00000236259 - NO_TRANSLATION retained_intron ENSMUSG00000024926 Kat5 ENSMUST00000113641 ENSMUSP00000109271 TRANSLATION protein_coding - CCDS29472.1 1 513.0 28.0 8.98 13.0 351.6 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:3 ENSMUSG00000024782 Ak3 ENSMUST00000125587 ENSMUSP00000121867 TRANSLATION protein_coding start - 2 65.0 0.0 1.75 0.0 62.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000024782 Ak3 ENSMUST00000025696 ENSMUSP00000025696 TRANSLATION protein_coding - CCDS29730.1 1 227.0 19.0 5.75 12.7 235.8 0.0 -3,0 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000024949 Sf1 ENSMUST00000113485 ENSMUSP00000109113 TRANSLATION nonsense_mediated_decay - - 1 110.0 0.0 1.58 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000024949 Sf1 ENSMUST00000162237 ENSMUSP00000124590 TRANSLATION protein_coding start/stop - 5 171.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024949 Sf1 ENSMUST00000124667 ENSMUSP00000114788 TRANSLATION protein_coding start - 5 200.0 1.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024949 Sf1 ENSMUST00000131083 - NO_TRANSLATION retained_intron ENSMUSG00000024949 Sf1 ENSMUST00000125516 ENSMUSP00000117172 TRANSLATION protein_coding start - 3 225.0 1.0 0.0 0.0 0.0 0.0 -4,-5 0.0007 1 -2.0 MINOR ENSMUSG00000024949 Sf1 ENSMUST00000131252 ENSMUSP00000121309 TRANSLATION protein_coding - CCDS50368.1 1 639.0 5.0 6.41 5.3 203.3 0.0 -4,-6 1.0 10 14.686 ALTERNATIVE:1 ENSMUSG00000024949 Sf1 ENSMUST00000154260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024949 Sf1 ENSMUST00000155973 ENSMUSP00000114438 TRANSLATION protein_coding stop - 5 267.0 4.0 5.58 0.0 195.5 0.0 -4,-5 0.0041 8 -2.0 MINOR ENSMUSG00000024949 Sf1 ENSMUST00000146298 - NO_TRANSLATION retained_intron ENSMUSG00000024949 Sf1 ENSMUST00000144239 - NO_TRANSLATION retained_intron ENSMUSG00000024949 Sf1 ENSMUST00000144409 ENSMUSP00000123175 TRANSLATION nonsense_mediated_decay - - 3 84.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024949 Sf1 ENSMUST00000131677 - NO_TRANSLATION retained_intron ENSMUSG00000024949 Sf1 ENSMUST00000113487 ENSMUSP00000109115 TRANSLATION protein_coding - CCDS50369.1 1 548.0 5.0 6.41 5.3 203.3 0.0 -4,-6 0.8517 10 14.686 ALTERNATIVE:1 ENSMUSG00000024949 Sf1 ENSMUST00000113488 ENSMUSP00000109116 TRANSLATION protein_coding - - 5 638.0 5.0 6.41 6.1 203.3 0.0 -4,-6 0.8654 11 15.0 PRINCIPAL:3 ENSMUSG00000024949 Sf1 ENSMUST00000113489 ENSMUSP00000109117 TRANSLATION protein_coding - - 5 571.0 4.0 6.41 5.3 203.3 0.0 -4,-6 0.7184 12 13.686 MINOR ENSMUSG00000024713 Pcsk5 ENSMUST00000235505 - NO_TRANSLATION retained_intron ENSMUSG00000024713 Pcsk5 ENSMUST00000235828 - NO_TRANSLATION retained_intron ENSMUSG00000024713 Pcsk5 ENSMUST00000050715 ENSMUSP00000050272 TRANSLATION protein_coding - CCDS50402.1 1 915.0 7.0 11.85 0.4 447.4 0.0 -1,-5 0.1178 6 15.72 MINOR ENSMUSG00000024713 Pcsk5 ENSMUST00000025618 ENSMUSP00000025618 TRANSLATION protein_coding - CCDS50401.1 5 1877.0 7.0 12.678 0.4 457.8 0.0 -1,-5 1.0 20 18.0 PRINCIPAL:1 ENSMUSG00000024713 Pcsk5 ENSMUST00000237115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067889 Sptbn2 ENSMUST00000238976 ENSMUSP00000159038 TRANSLATION protein_coding stop - - 225.0 0.0 3.69 0.0 120.0 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000067889 Sptbn2 ENSMUST00000008991 ENSMUSP00000008991 TRANSLATION protein_coding - CCDS29434.1 1 2388.0 0.0 23.45 7.6 1214.8 0.0 -4,-5 1.0 96 14.0 PRINCIPAL:1 ENSMUSG00000067889 Sptbn2 ENSMUST00000237694 ENSMUSP00000158522 TRANSLATION protein_coding stop - - 175.0 0.0 3.1 0.0 85.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000067889 Sptbn2 ENSMUST00000238162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000109328 Or5a21 ENSMUST00000208398 ENSMUSP00000146531 TRANSLATION protein_coding - - 5 319.0 0.0 1.0 7.8 179.0 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042401 Crtac1 ENSMUST00000238182 ENSMUSP00000158328 TRANSLATION protein_coding start - - 87.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000042401 Crtac1 ENSMUST00000048630 ENSMUSP00000044858 TRANSLATION protein_coding - CCDS29828.1 1 646.0 12.0 10.93 8.1 43.7 0.0 2,-2 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000042401 Crtac1 ENSMUST00000238290 ENSMUSP00000158623 TRANSLATION protein_coding - - - 652.0 12.0 10.93 2.2 43.7 0.0 2,-2 0.3542 6 18.507 MINOR ENSMUSG00000062892 Or5b98 ENSMUST00000082006 ENSMUSP00000080666 TRANSLATION protein_coding - CCDS29646.1 - 325.0 0.0 1.0 2.9 175.0 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000062892 Or5b98 ENSMUST00000213925 ENSMUSP00000150243 TRANSLATION protein_coding - CCDS29646.1 5 325.0 0.0 1.0 2.9 175.0 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000062892 Or5b98 ENSMUST00000213587 ENSMUSP00000149761 TRANSLATION protein_coding - CCDS29646.1 5 325.0 0.0 1.0 2.9 175.0 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000069833 Ahnak ENSMUST00000237912 ENSMUSP00000157404 TRANSLATION nonsense_mediated_decay - - - 176.0 0.0 0.82 0.0 30.2 0.0 -4,-5 0.0329 5 -2.0 MINOR ENSMUSG00000069833 Ahnak ENSMUST00000092955 ENSMUSP00000090632 TRANSLATION protein_coding - CCDS50384.1 2 150.0 0.0 0.82 3.5 30.2 0.0 -4,-5 1.0 5 7.0 PRINCIPAL:2 ENSMUSG00000069833 Ahnak ENSMUST00000236390 ENSMUSP00000158470 TRANSLATION protein_coding stop - - 311.0 0.0 0.82 0.0 30.2 0.0 -4,-5 0.1019 15 -2.0 MINOR ENSMUSG00000069833 Ahnak ENSMUST00000092956 ENSMUSP00000090633 TRANSLATION protein_coding - CCDS29564.1 1 5656.0 0.0 0.82 0.0 30.2 0.0 -4,-5 0.4988 275 6.0 ALTERNATIVE:2 ENSMUSG00000069833 Ahnak ENSMUST00000237033 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000010095 Slc3a2 ENSMUST00000206797 ENSMUSP00000145892 TRANSLATION protein_coding stop - 5 231.0 0.0 4.08 0.0 161.3 4.0 -4,-5 0.038 9 -2.0 MINOR ENSMUSG00000010095 Slc3a2 ENSMUST00000206598 ENSMUSP00000146016 TRANSLATION protein_coding - - 2 303.0 3.0 6.24 0.7 0.0 0.0 -4,-5 0.0018 6 3.0 MINOR ENSMUSG00000010095 Slc3a2 ENSMUST00000170157 ENSMUSP00000130194 TRANSLATION protein_coding - CCDS50381.1 1 565.0 3.0 9.99 0.4 158.9 4.0 -4,-5 0.2815 15 11.0 ALTERNATIVE:2 ENSMUSG00000010095 Slc3a2 ENSMUST00000206560 ENSMUSP00000145809 TRANSLATION protein_coding stop - 3 113.0 0.0 1.0 0.0 106.0 4.0 -4,-5 0.0041 3 -2.0 MINOR ENSMUSG00000010095 Slc3a2 ENSMUST00000205463 ENSMUSP00000146036 TRANSLATION protein_coding start/stop - 5 80.0 0.0 2.028 0.0 33.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000010095 Slc3a2 ENSMUST00000010239 ENSMUSP00000010239 TRANSLATION protein_coding - CCDS29540.1 1 526.0 3.0 9.99 0.1 158.9 4.0 -4,-5 1.0 15 11.0 PRINCIPAL:2 ENSMUSG00000010095 Slc3a2 ENSMUST00000205538 ENSMUSP00000145974 TRANSLATION protein_coding stop - 3 109.0 0.0 1.0 0.0 99.5 4.0 -4,-5 0.0041 3 -2.0 MINOR ENSMUSG00000010095 Slc3a2 ENSMUST00000205377 ENSMUSP00000146080 TRANSLATION protein_coding start/stop - 5 126.0 0.0 3.49 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000010095 Slc3a2 ENSMUST00000206895 - NO_TRANSLATION retained_intron ENSMUSG00000006456 Rbm14 ENSMUST00000113793 ENSMUSP00000109424 TRANSLATION protein_coding - - 1 614.0 0.0 1.0 0.0 101.4 0.0 -4,-5 0.0368 17 11.01 MINOR ENSMUSG00000006456 Rbm14 ENSMUST00000006625 ENSMUSP00000006625 TRANSLATION protein_coding - CCDS29437.1 1 669.0 0.0 1.0 9.8 101.4 0.0 -4,-5 1.0 23 14.01 PRINCIPAL:1 ENSMUSG00000006456 Rbm14 ENSMUST00000180008 ENSMUSP00000137466 TRANSLATION protein_coding - - 5 119.0 0.0 1.198 1.9 67.6 0.0 -4,-5 0.1139 3 10.278 MINOR ENSMUSG00000003559 As3mt ENSMUST00000237219 ENSMUSP00000157523 TRANSLATION protein_coding - - - 273.0 10.0 3.974 0.0 65.9 0.0 -4,-5 0.0 8 6.144 MINOR ENSMUSG00000003559 As3mt ENSMUST00000236465 ENSMUSP00000158498 TRANSLATION nonsense_mediated_decay - - - 99.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000003559 As3mt ENSMUST00000235842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003559 As3mt ENSMUST00000236473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003559 As3mt ENSMUST00000003655 ENSMUSP00000003655 TRANSLATION protein_coding - CCDS50458.1 1 376.0 20.0 5.474 6.4 113.5 0.0 -4,-5 1.0 16 20.0 PRINCIPAL:1 ENSMUSG00000003559 As3mt ENSMUST00000236063 ENSMUSP00000157611 TRANSLATION nonsense_mediated_decay - - - 65.0 5.0 0.6 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000003559 As3mt ENSMUST00000235266 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024966 Stip1 ENSMUST00000025918 ENSMUSP00000025918 TRANSLATION protein_coding - CCDS37901.1 1 543.0 0.0 10.49 27.4 175.1 0.0 -4,-5 1.0 39 16.0 PRINCIPAL:1 ENSMUSG00000094986 Or5b102 ENSMUST00000217568 ENSMUSP00000148859 TRANSLATION protein_coding - CCDS29649.1 5 307.0 0.0 1.0 8.0 171.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094986 Or5b102 ENSMUST00000214695 ENSMUSP00000149503 TRANSLATION protein_coding - CCDS29649.1 5 307.0 0.0 1.0 8.0 171.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094986 Or5b102 ENSMUST00000073732 ENSMUSP00000073409 TRANSLATION protein_coding - CCDS29649.1 - 307.0 0.0 1.0 8.0 171.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094986 Or5b102 ENSMUST00000213806 ENSMUSP00000150001 TRANSLATION protein_coding - CCDS29649.1 5 307.0 0.0 1.0 8.0 171.1 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048572 Tmem252 ENSMUST00000057243 ENSMUSP00000060863 TRANSLATION protein_coding - CCDS29713.1 1 183.0 0.0 1.0 0.1 231.5 0.0 -1,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000086812 Gm8978 ENSMUST00000124230 ENSMUSP00000158516 TRANSLATION protein_coding - - 5 399.0 10.0 7.7 0.8 71.5 0.0 0,-3 0.7949 - 18.0 PRINCIPAL:1 ENSMUSG00000025019 Lcor ENSMUST00000067795 ENSMUSP00000067603 TRANSLATION protein_coding - CCDS29810.1 1 433.0 0.0 0.6 11.3 52.4 0.0 -4,-7 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000025019 Lcor ENSMUST00000163929 ENSMUSP00000126441 TRANSLATION protein_coding - CCDS29810.1 1 433.0 0.0 0.6 11.3 52.4 0.0 -4,-7 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000025019 Lcor ENSMUST00000172371 ENSMUSP00000128083 TRANSLATION protein_coding start - 5 1242.0 0.0 0.0 0.0 582.3 0.0 -4,-5 0.2488 3 -2.0 MINOR ENSMUSG00000025019 Lcor ENSMUST00000238398 ENSMUSP00000158715 TRANSLATION protein_coding - - - 1696.0 0.0 0.0 0.0 582.3 0.0 -4,-7 0.2616 4 6.0 MINOR ENSMUSG00000025019 Lcor ENSMUST00000237976 - NO_TRANSLATION retained_intron ENSMUSG00000025019 Lcor ENSMUST00000237208 ENSMUSP00000157765 TRANSLATION protein_coding stop - - 396.0 0.0 0.2 0.0 52.4 0.0 -4,-7 0.0017 5 -2.0 MINOR ENSMUSG00000025019 Lcor ENSMUST00000238431 ENSMUSP00000158618 TRANSLATION protein_coding - - - 1563.0 0.0 0.0 0.0 582.3 0.0 -4,-6 0.2591 3 6.0 MINOR ENSMUSG00000067199 Frat1 ENSMUST00000087155 ENSMUSP00000147726 TRANSLATION protein_coding - CCDS84438.1 - 274.0 0.0 0.0 5.3 438.1 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:1 ENSMUSG00000024817 Uhrf2 ENSMUST00000150532 - NO_TRANSLATION retained_intron ENSMUSG00000024817 Uhrf2 ENSMUST00000112552 - NO_TRANSLATION retained_intron ENSMUSG00000024817 Uhrf2 ENSMUST00000127244 - NO_TRANSLATION retained_intron ENSMUSG00000024817 Uhrf2 ENSMUST00000025739 ENSMUSP00000025739 TRANSLATION protein_coding - CCDS37955.1 1 803.0 12.0 12.5 10.3 457.2 0.0 -4,-6 1.0 8 21.0 PRINCIPAL:1 ENSMUSG00000024817 Uhrf2 ENSMUST00000129420 - NO_TRANSLATION retained_intron ENSMUSG00000024817 Uhrf2 ENSMUST00000123773 - NO_TRANSLATION retained_intron ENSMUSG00000024817 Uhrf2 ENSMUST00000137368 - NO_TRANSLATION retained_intron ENSMUSG00000024817 Uhrf2 ENSMUST00000134518 - NO_TRANSLATION retained_intron ENSMUSG00000024817 Uhrf2 ENSMUST00000143769 - NO_TRANSLATION retained_intron ENSMUSG00000032808 Cyp2c38 ENSMUST00000035488 ENSMUSP00000044722 TRANSLATION protein_coding - CCDS29794.1 1 490.0 34.0 9.0 7.6 534.0 0.0 -1,-4 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000024921 Smarca2 ENSMUST00000208806 ENSMUSP00000146442 TRANSLATION protein_coding stop - 5 68.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000208226 ENSMUSP00000146630 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 0.0 0.0 0.0 0.0 0,-5 0.0 - -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000208984 - NO_TRANSLATION retained_intron ENSMUSG00000024921 Smarca2 ENSMUST00000208378 - NO_TRANSLATION retained_intron ENSMUSG00000024921 Smarca2 ENSMUST00000176030 ENSMUSP00000135784 TRANSLATION protein_coding - - 5 1601.0 8.0 22.2445 0.8 524.2 0.0 -4,-5 0.734 16 14.0 PRINCIPAL:3 ENSMUSG00000024921 Smarca2 ENSMUST00000208589 ENSMUSP00000146890 TRANSLATION protein_coding - CCDS37945.1 5 236.0 0.0 4.796 0.7 75.1 0.0 -4,-5 0.0845 1 0.2 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000208541 ENSMUSP00000146626 TRANSLATION nonsense_mediated_decay - - 5 72.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0 - -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000112637 ENSMUSP00000108256 TRANSLATION protein_coding - CCDS37945.1 1 236.0 0.0 4.796 0.7 75.1 0.0 -4,-5 0.0845 1 0.2 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000177484 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024921 Smarca2 ENSMUST00000208303 ENSMUSP00000147173 TRANSLATION protein_coding start/stop - 5 228.0 8.0 4.93 0.0 114.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000176698 ENSMUSP00000134914 TRANSLATION protein_coding - - 5 254.0 0.0 4.996 0.0 74.5 0.0 -4,-5 0.0 2 0.2 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000208186 ENSMUSP00000146632 TRANSLATION protein_coding stop - 5 244.0 0.0 4.996 0.0 74.5 0.0 0,-3 0.0 3 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000176475 ENSMUSP00000135248 TRANSLATION protein_coding - CCDS84428.1 5 276.0 0.0 4.796 20.3 75.1 0.0 0,-3 1.0 2 4.2 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000208163 ENSMUSP00000146859 TRANSLATION protein_coding stop - 5 78.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000207380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024921 Smarca2 ENSMUST00000208915 ENSMUSP00000146432 TRANSLATION nonsense_mediated_decay - - 1 72.0 0.0 0.0 0.0 0.0 0.0 0,-3 0.0 1 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000176769 ENSMUSP00000135017 TRANSLATION protein_coding - - 5 1525.0 8.0 21.0445 0.0 438.2 0.0 -4,-5 0.0821 14 11.6 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000175791 ENSMUSP00000135412 TRANSLATION protein_coding - - 3 254.0 0.0 4.996 0.0 74.5 0.0 -4,-5 0.0 2 0.2 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000207418 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024921 Smarca2 ENSMUST00000207054 ENSMUSP00000146493 TRANSLATION protein_coding - - 5 278.0 0.0 4.796 20.3 75.1 0.0 1,-3 0.8583 2 4.2 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000099537 ENSMUSP00000097135 TRANSLATION nonsense_mediated_decay - - 1 1510.0 8.0 18.7785 0.0 449.7 0.0 -4,-5 0.0643 15 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000208674 ENSMUSP00000146770 TRANSLATION protein_coding start/stop - 5 267.0 0.0 5.23 0.0 75.1 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000207535 ENSMUSP00000146464 TRANSLATION nonsense_mediated_decay start - 5 93.0 0.0 1.53 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000176019 - NO_TRANSLATION retained_intron ENSMUSG00000024921 Smarca2 ENSMUST00000207944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024921 Smarca2 ENSMUST00000208712 ENSMUSP00000147244 TRANSLATION protein_coding stop - 5 169.0 0.0 4.4 0.0 75.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000207226 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024921 Smarca2 ENSMUST00000207118 ENSMUSP00000146379 TRANSLATION protein_coding stop - 3 228.0 0.0 4.796 0.0 75.1 0.0 0,-3 0.0005 2 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000177252 ENSMUSP00000134995 TRANSLATION protein_coding stop - 5 201.0 0.0 4.796 0.0 75.1 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000207832 ENSMUSP00000146919 TRANSLATION protein_coding stop - 5 229.0 0.0 4.796 0.0 75.1 0.0 0,-3 0.0005 2 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000025862 ENSMUSP00000025862 TRANSLATION protein_coding - CCDS29720.1 5 1583.0 8.0 22.0445 0.7 519.2 0.0 -4,-5 0.5826 15 13.598 ALTERNATIVE:2 ENSMUSG00000024921 Smarca2 ENSMUST00000176731 ENSMUSP00000135460 TRANSLATION nonsense_mediated_decay start - 5 299.0 0.0 3.4 0.0 0.0 0.0 -4,-6 0.0013 4 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000176584 ENSMUSP00000135344 TRANSLATION protein_coding stop - 3 173.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000208751 ENSMUSP00000146924 TRANSLATION protein_coding - CCDS37945.1 5 236.0 0.0 4.796 0.7 75.1 0.0 -4,-5 0.0845 1 0.2 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000207812 ENSMUSP00000146616 TRANSLATION protein_coding stop - 5 200.0 0.0 4.4 0.0 75.1 0.0 0,-3 0.0 2 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000175935 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024921 Smarca2 ENSMUST00000177116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024921 Smarca2 ENSMUST00000176700 - NO_TRANSLATION retained_intron ENSMUSG00000024921 Smarca2 ENSMUST00000175842 ENSMUSP00000135800 TRANSLATION protein_coding stop - 2 211.0 0.0 4.598 0.0 75.1 0.0 0,-3 0.0 2 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000208705 ENSMUSP00000146971 TRANSLATION protein_coding stop - 5 170.0 0.0 4.27 0.0 74.5 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000208027 ENSMUSP00000146392 TRANSLATION protein_coding stop - 5 296.0 0.0 4.996 0.0 74.5 0.0 0,-3 0.0 3 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000209085 ENSMUSP00000146994 TRANSLATION protein_coding - CCDS84428.1 5 276.0 0.0 4.796 20.3 75.1 0.0 0,-3 1.0 2 4.2 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000207175 - NO_TRANSLATION retained_intron ENSMUSG00000024921 Smarca2 ENSMUST00000175953 ENSMUSP00000135042 TRANSLATION protein_coding stop - 3 149.0 0.0 4.07 0.0 75.1 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000208091 ENSMUSP00000146875 TRANSLATION protein_coding - - 5 260.0 0.0 4.796 2.0 75.1 0.0 -4,-5 0.0759 1 0.408 MINOR ENSMUSG00000024921 Smarca2 ENSMUST00000176494 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045664 Cdc42ep2 ENSMUST00000055458 ENSMUSP00000059883 TRANSLATION protein_coding - CCDS29484.1 1 214.0 0.0 0.2 10.3 115.5 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000024891 Slc29a2 ENSMUST00000235933 - NO_TRANSLATION retained_intron ENSMUSG00000024891 Slc29a2 ENSMUST00000236152 ENSMUSP00000157780 TRANSLATION protein_coding - CCDS50354.1 - 456.0 0.0 7.071 10.3 381.5 24.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000024891 Slc29a2 ENSMUST00000237267 - NO_TRANSLATION retained_intron ENSMUSG00000024891 Slc29a2 ENSMUST00000235416 ENSMUSP00000157993 TRANSLATION protein_coding stop - - 228.0 0.0 5.232 0.0 104.9 15.0 -4,-5 0.0042 - -2.0 MINOR ENSMUSG00000024891 Slc29a2 ENSMUST00000025826 ENSMUSP00000025826 TRANSLATION protein_coding - - 1 427.0 0.0 5.057 0.0 218.0 19.0 -4,-5 0.0036 1 1.974 MINOR ENSMUSG00000024891 Slc29a2 ENSMUST00000237371 ENSMUSP00000157983 TRANSLATION protein_coding - - - 404.0 0.0 6.039 0.0 381.5 23.0 -4,-6 0.0398 1 9.936 MINOR ENSMUSG00000024795 Kif20b ENSMUST00000224603 - NO_TRANSLATION retained_intron ENSMUSG00000024795 Kif20b ENSMUST00000223907 ENSMUSP00000153034 TRANSLATION protein_coding - - - 1734.0 11.0 8.563 0.4 318.9 0.0 -4,-5 1.0 19 12.0 PRINCIPAL:4 ENSMUSG00000024795 Kif20b ENSMUST00000223937 ENSMUSP00000153193 TRANSLATION nonsense_mediated_decay start - - 214.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 - -2.0 MINOR ENSMUSG00000024795 Kif20b ENSMUST00000223776 ENSMUSP00000152994 TRANSLATION protein_coding stop - - 207.0 10.0 3.388 0.0 90.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024795 Kif20b ENSMUST00000087341 ENSMUSP00000084599 TRANSLATION protein_coding - CCDS37967.1 5 1774.0 11.0 8.563 0.4 318.9 0.0 -4,-5 0.7557 19 12.0 ALTERNATIVE:2 ENSMUSG00000024795 Kif20b ENSMUST00000225151 ENSMUSP00000153181 TRANSLATION protein_coding start - - 136.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000024795 Kif20b ENSMUST00000225408 ENSMUSP00000153592 TRANSLATION nonsense_mediated_decay start - - 40.0 7.0 1.165 0.0 32.4 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024795 Kif20b ENSMUST00000224728 ENSMUSP00000153020 TRANSLATION nonsense_mediated_decay start - - 51.0 0.0 0.875 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000024795 Kif20b ENSMUST00000224381 - NO_TRANSLATION retained_intron ENSMUSG00000024795 Kif20b ENSMUST00000225625 - NO_TRANSLATION retained_intron ENSMUSG00000039652 Cpeb3 ENSMUST00000123727 ENSMUSP00000121987 TRANSLATION protein_coding - CCDS70946.1 1 685.0 8.0 6.132 4.5 191.5 0.0 -4,-5 0.8388 3 15.126 ALTERNATIVE:1 ENSMUSG00000039652 Cpeb3 ENSMUST00000126188 ENSMUSP00000120416 TRANSLATION protein_coding - CCDS70947.1 1 693.0 8.0 6.33 4.3 191.5 0.0 -4,-5 0.8175 3 15.434 ALTERNATIVE:2 ENSMUSG00000039652 Cpeb3 ENSMUST00000131917 ENSMUSP00000123080 TRANSLATION protein_coding stop - 3 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039652 Cpeb3 ENSMUST00000154376 ENSMUSP00000116172 TRANSLATION protein_coding - CCDS29775.1 1 716.0 8.0 6.33 5.6 191.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:3 ENSMUSG00000039652 Cpeb3 ENSMUST00000079754 ENSMUSP00000078690 TRANSLATION protein_coding - CCDS29775.1 1 716.0 8.0 6.33 5.6 191.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:3 ENSMUSG00000039652 Cpeb3 ENSMUST00000136286 ENSMUSP00000116309 TRANSLATION protein_coding - - 5 699.0 8.0 6.0 3.2 191.5 0.0 -4,-5 0.6128 4 14.296 MINOR ENSMUSG00000039652 Cpeb3 ENSMUST00000142973 ENSMUSP00000117242 TRANSLATION protein_coding stop - 2 127.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039652 Cpeb3 ENSMUST00000124158 ENSMUSP00000115656 TRANSLATION protein_coding start - 5 415.0 8.0 6.132 0.0 191.5 0.0 -4,-7 0.0206 2 -2.0 MINOR ENSMUSG00000039652 Cpeb3 ENSMUST00000126781 ENSMUSP00000122442 TRANSLATION protein_coding - - 1 561.0 0.0 4.33 0.0 118.7 0.0 -4,-5 0.0 3 2.798 MINOR ENSMUSG00000039652 Cpeb3 ENSMUST00000133988 ENSMUSP00000116749 TRANSLATION protein_coding stop - 3 179.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039652 Cpeb3 ENSMUST00000128642 ENSMUSP00000115038 TRANSLATION protein_coding stop - 3 95.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000039652 Cpeb3 ENSMUST00000132580 ENSMUSP00000118723 TRANSLATION protein_coding - CCDS29775.1 1 716.0 8.0 6.33 5.6 191.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:3 ENSMUSG00000024843 Chka ENSMUST00000139655 ENSMUSP00000116427 TRANSLATION nonsense_mediated_decay start - 5 163.0 6.0 1.9 0.0 0.0 0.0 -2,-4 0.0 1 -2.0 MINOR ENSMUSG00000024843 Chka ENSMUST00000125859 - NO_TRANSLATION retained_intron ENSMUSG00000024843 Chka ENSMUST00000125013 - NO_TRANSLATION retained_intron ENSMUSG00000024843 Chka ENSMUST00000146463 - NO_TRANSLATION retained_intron ENSMUSG00000024843 Chka ENSMUST00000072055 ENSMUSP00000071933 TRANSLATION protein_coding - CCDS29400.1 1 435.0 27.0 9.9 5.7 269.1 0.0 -3,-4 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000024843 Chka ENSMUST00000148325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024843 Chka ENSMUST00000153343 ENSMUSP00000115861 TRANSLATION nonsense_mediated_decay - - 3 76.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000024843 Chka ENSMUST00000124219 - NO_TRANSLATION retained_intron ENSMUSG00000024843 Chka ENSMUST00000154467 - NO_TRANSLATION retained_intron ENSMUSG00000024843 Chka ENSMUST00000127544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024843 Chka ENSMUST00000125640 ENSMUSP00000119493 TRANSLATION protein_coding start/stop - 5 230.0 14.0 4.75 0.0 159.2 0.0 -4,-7 0.0005 4 -2.0 MINOR ENSMUSG00000024843 Chka ENSMUST00000025760 ENSMUSP00000025760 TRANSLATION protein_coding - CCDS70913.1 5 453.0 27.0 9.9 5.7 264.5 0.0 -3,-4 0.8163 6 14.0 MINOR ENSMUSG00000024843 Chka ENSMUST00000128694 ENSMUSP00000119919 TRANSLATION nonsense_mediated_decay - - 1 164.0 6.0 1.9 0.0 0.0 0.0 -3,-4 0.0 2 -2.0 MINOR ENSMUSG00000024843 Chka ENSMUST00000125411 - NO_TRANSLATION retained_intron ENSMUSG00000074746 Pdzd8 ENSMUST00000099274 ENSMUSP00000096880 TRANSLATION protein_coding - CCDS29936.1 1 1147.0 7.0 0.3 2.8 64.0 0.0 3,-1 1.0 17 19.0 PRINCIPAL:1 ENSMUSG00000025207 Sema4g ENSMUST00000235970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025207 Sema4g ENSMUST00000236662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025207 Sema4g ENSMUST00000130549 ENSMUSP00000138321 TRANSLATION nonsense_mediated_decay - CCDS29853.1 5 837.0 0.0 7.33 9.8 495.2 0.0 3,-2 1.0 - -2.0 MINOR ENSMUSG00000025207 Sema4g ENSMUST00000026225 ENSMUSP00000026225 TRANSLATION protein_coding - CCDS29853.1 1 837.0 0.0 7.33 9.8 495.2 0.0 3,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000025207 Sema4g ENSMUST00000235312 - NO_TRANSLATION retained_intron ENSMUSG00000025207 Sema4g ENSMUST00000179305 ENSMUSP00000137395 TRANSLATION protein_coding - CCDS29853.1 1 837.0 0.0 7.33 9.8 495.2 0.0 3,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000025207 Sema4g ENSMUST00000237987 - NO_TRANSLATION retained_intron ENSMUSG00000025207 Sema4g ENSMUST00000238104 - NO_TRANSLATION retained_intron ENSMUSG00000064105 Cnnm2 ENSMUST00000235378 - NO_TRANSLATION retained_intron ENSMUSG00000064105 Cnnm2 ENSMUST00000099373 ENSMUSP00000096972 TRANSLATION protein_coding - CCDS50459.1 1 875.0 14.0 4.3 9.9 145.2 3.0 -3,-4 1.0 9 17.0 PRINCIPAL:3 ENSMUSG00000064105 Cnnm2 ENSMUST00000077666 ENSMUSP00000076850 TRANSLATION protein_coding - CCDS50460.1 1 853.0 14.0 4.3 9.9 145.2 3.0 -3,-4 0.9597 8 17.0 ALTERNATIVE:1 ENSMUSG00000064105 Cnnm2 ENSMUST00000235671 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024939 Fam89b ENSMUST00000099955 ENSMUSP00000097538 TRANSLATION protein_coding - CCDS37890.1 1 189.0 0.0 1.5 6.5 27.2 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000024939 Fam89b ENSMUST00000161368 ENSMUSP00000124294 TRANSLATION protein_coding - CCDS50361.1 1 176.0 0.0 1.0 2.0 0.0 0.0 -4,-5 0.0737 2 4.366 MINOR ENSMUSG00000024939 Fam89b ENSMUST00000116558 ENSMUSP00000112257 TRANSLATION protein_coding - - 1 149.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 2 0.0 MINOR ENSMUSG00000025204 Ndufb8 ENSMUST00000164543 - NO_TRANSLATION retained_intron ENSMUSG00000025204 Ndufb8 ENSMUST00000167027 ENSMUSP00000130918 TRANSLATION protein_coding stop - 5 138.0 0.0 2.23 0.0 144.3 0.0 -3,1 0.0001 3 -2.0 MINOR ENSMUSG00000025204 Ndufb8 ENSMUST00000171415 ENSMUSP00000128192 TRANSLATION protein_coding - CCDS84446.1 1 157.0 0.0 3.23 0.0 214.1 1.0 -3,1 0.0121 6 7.332 MINOR ENSMUSG00000025204 Ndufb8 ENSMUST00000166557 - NO_TRANSLATION retained_intron ENSMUSG00000025204 Ndufb8 ENSMUST00000169181 - NO_TRANSLATION retained_intron ENSMUSG00000025204 Ndufb8 ENSMUST00000168083 ENSMUSP00000132740 TRANSLATION nonsense_mediated_decay - - 3 84.0 0.0 0.15 0.0 0.0 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000025204 Ndufb8 ENSMUST00000169304 ENSMUSP00000132421 TRANSLATION protein_coding start - 2 111.0 0.0 2.25 0.0 165.8 1.0 -4,-5 0.001 5 -2.0 MINOR ENSMUSG00000025204 Ndufb8 ENSMUST00000168474 - NO_TRANSLATION retained_intron ENSMUSG00000025204 Ndufb8 ENSMUST00000026222 ENSMUSP00000026222 TRANSLATION protein_coding - CCDS29851.1 1 186.0 0.0 4.23 13.6 258.6 1.0 -3,1 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000071659 Hnrnpul2 ENSMUST00000237237 - NO_TRANSLATION retained_intron ENSMUSG00000071659 Hnrnpul2 ENSMUST00000096753 ENSMUSP00000094515 TRANSLATION protein_coding - CCDS37908.1 1 745.0 9.0 1.68 8.3 176.2 0.0 -4,-7 1.0 25 21.0 PRINCIPAL:1 ENSMUSG00000095640 Or5an1 ENSMUST00000207915 ENSMUSP00000147137 TRANSLATION protein_coding stop - 3 126.0 0.0 1.0 0.0 68.9 4.0 -3,-5 0.0037 - -2.0 MINOR ENSMUSG00000095640 Or5an1 ENSMUST00000207186 ENSMUSP00000146925 TRANSLATION protein_coding - CCDS57138.1 3 312.0 0.0 2.0 9.8 184.4 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000095640 Or5an1 ENSMUST00000208197 ENSMUSP00000146411 TRANSLATION protein_coding - CCDS57138.1 - 312.0 0.0 2.0 9.8 184.4 7.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025223 Ldb1 ENSMUST00000026252 ENSMUSP00000026252 TRANSLATION protein_coding - CCDS29870.1 1 375.0 0.0 6.5 29.0 181.5 0.0 -4,-5 0.9474 6 9.876 ALTERNATIVE:1 ENSMUSG00000025223 Ldb1 ENSMUST00000156585 ENSMUSP00000118546 TRANSLATION protein_coding - CCDS50455.1 1 411.0 0.0 6.5 29.9 181.5 0.0 -4,-6 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000025223 Ldb1 ENSMUST00000185355 ENSMUSP00000139562 TRANSLATION protein_coding - CCDS50455.1 1 411.0 0.0 6.5 29.9 181.5 0.0 -4,-6 1.0 6 10.0 PRINCIPAL:4 ENSMUSG00000025223 Ldb1 ENSMUST00000056931 ENSMUSP00000053680 TRANSLATION protein_coding - CCDS29870.1 1 375.0 0.0 6.5 29.0 181.5 0.0 -4,-5 0.9474 6 9.876 ALTERNATIVE:1 ENSMUSG00000025223 Ldb1 ENSMUST00000126320 - NO_TRANSLATION retained_intron ENSMUSG00000025223 Ldb1 ENSMUST00000136203 - NO_TRANSLATION retained_intron ENSMUSG00000025223 Ldb1 ENSMUST00000137771 ENSMUSP00000114667 TRANSLATION protein_coding - - 5 319.0 0.0 5.5 0.0 181.5 0.0 -4,-5 0.01 6 4.002 MINOR ENSMUSG00000025223 Ldb1 ENSMUST00000152946 ENSMUSP00000116909 TRANSLATION protein_coding - - 5 373.0 0.0 6.5 29.0 181.5 0.0 -4,-5 0.8066 6 9.876 ALTERNATIVE:1 ENSMUSG00000035179 Ppp1r32 ENSMUST00000237522 ENSMUSP00000158578 TRANSLATION protein_coding - CCDS29577.1 - 427.0 0.0 0.0 7.2 652.4 0.0 -4,-6 1.0 11 8.0 PRINCIPAL:1 ENSMUSG00000035179 Ppp1r32 ENSMUST00000038842 ENSMUSP00000035684 TRANSLATION protein_coding - CCDS29577.1 1 427.0 0.0 0.0 7.2 652.4 0.0 -4,-6 1.0 11 8.0 PRINCIPAL:1 ENSMUSG00000035179 Ppp1r32 ENSMUST00000235392 ENSMUSP00000157403 TRANSLATION protein_coding - - - 253.0 0.0 0.0 0.0 338.1 0.0 -4,-5 0.0 8 0.0 MINOR ENSMUSG00000035179 Ppp1r32 ENSMUST00000236733 ENSMUSP00000157876 TRANSLATION protein_coding stop - - 54.0 0.0 0.0 0.0 101.5 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000049164 Zfp518a ENSMUST00000050092 ENSMUSP00000055956 TRANSLATION protein_coding - CCDS37982.1 2 1478.0 24.0 0.0 0.1 0.0 0.0 -4,-5 0.9656 6 6.0 PRINCIPAL:1 ENSMUSG00000049164 Zfp518a ENSMUST00000235235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049164 Zfp518a ENSMUST00000235207 ENSMUSP00000158039 TRANSLATION protein_coding - CCDS37982.1 - 1478.0 24.0 0.0 0.1 0.0 0.0 -4,-5 0.9656 6 6.0 PRINCIPAL:1 ENSMUSG00000024982 Zdhhc6 ENSMUST00000226103 ENSMUSP00000153404 TRANSLATION nonsense_mediated_decay - CCDS29909.1 - 413.0 6.0 4.635 24.7 180.0 4.0 -4,-7 1.0 3 -2.0 MINOR ENSMUSG00000024982 Zdhhc6 ENSMUST00000224474 - NO_TRANSLATION retained_intron ENSMUSG00000024982 Zdhhc6 ENSMUST00000223807 ENSMUSP00000153697 TRANSLATION nonsense_mediated_decay - - - 144.0 5.0 1.5 0.0 0.0 2.0 -4,-7 0.0017 1 -2.0 MINOR ENSMUSG00000024982 Zdhhc6 ENSMUST00000225495 ENSMUSP00000152962 TRANSLATION protein_coding - - - 397.0 6.0 4.435 0.0 153.5 4.0 -4,-7 0.0304 3 16.008 MINOR ENSMUSG00000024982 Zdhhc6 ENSMUST00000225032 - NO_TRANSLATION retained_intron ENSMUSG00000024982 Zdhhc6 ENSMUST00000224291 ENSMUSP00000153221 TRANSLATION protein_coding - - - 421.0 6.0 4.435 0.0 154.7 4.0 -4,-7 0.0323 3 16.08 MINOR ENSMUSG00000024982 Zdhhc6 ENSMUST00000076891 ENSMUSP00000076157 TRANSLATION protein_coding - CCDS29909.1 1 413.0 6.0 4.635 24.7 180.0 4.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000024982 Zdhhc6 ENSMUST00000223743 - NO_TRANSLATION retained_intron ENSMUSG00000024982 Zdhhc6 ENSMUST00000224897 ENSMUSP00000153014 TRANSLATION protein_coding - CCDS29909.1 - 413.0 6.0 4.635 24.7 180.0 4.0 -4,-7 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000024982 Zdhhc6 ENSMUST00000223625 - NO_TRANSLATION retained_intron ENSMUSG00000024982 Zdhhc6 ENSMUST00000225963 ENSMUSP00000153159 TRANSLATION nonsense_mediated_decay - - - 410.0 6.0 4.435 0.0 150.6 4.0 -4,-7 0.0467 3 -2.0 MINOR ENSMUSG00000025069 Gsto2 ENSMUST00000135016 ENSMUSP00000119680 TRANSLATION protein_coding - CCDS29894.1 5 248.0 11.0 5.5 0.4 63.0 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000025069 Gsto2 ENSMUST00000237514 ENSMUSP00000158279 TRANSLATION protein_coding - - - 192.0 11.0 4.5 0.0 63.0 0.0 -4,-5 0.0081 1 16.002 MINOR ENSMUSG00000025069 Gsto2 ENSMUST00000235857 ENSMUSP00000158441 TRANSLATION nonsense_mediated_decay - - - 64.0 4.0 1.56 0.0 22.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025069 Gsto2 ENSMUST00000120645 ENSMUSP00000113409 TRANSLATION protein_coding - CCDS29894.1 1 248.0 11.0 5.5 0.4 63.0 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000025069 Gsto2 ENSMUST00000056159 ENSMUSP00000052592 TRANSLATION protein_coding - CCDS29894.1 1 248.0 11.0 5.5 0.4 63.0 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000025069 Gsto2 ENSMUST00000237607 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025069 Gsto2 ENSMUST00000236449 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025069 Gsto2 ENSMUST00000235896 ENSMUSP00000157838 TRANSLATION protein_coding - - - 214.0 11.0 4.5 0.3 63.0 0.0 -4,-5 0.0095 3 16.002 MINOR ENSMUSG00000025069 Gsto2 ENSMUST00000238084 ENSMUSP00000158414 TRANSLATION protein_coding - - - 214.0 11.0 4.5 0.3 63.0 0.0 -4,-5 0.0095 3 16.002 MINOR ENSMUSG00000024770 Lipn ENSMUST00000025682 ENSMUSP00000025682 TRANSLATION protein_coding - CCDS37962.1 1 400.0 4.0 7.95 13.9 140.9 0.0 3,-2 1.0 1 20.0 PRINCIPAL:1 ENSMUSG00000024770 Lipn ENSMUST00000126710 ENSMUSP00000114551 TRANSLATION protein_coding stop - 3 180.0 2.0 3.45 0.0 71.7 0.0 3,-2 0.0009 - -2.0 MINOR ENSMUSG00000024770 Lipn ENSMUST00000148821 ENSMUSP00000120184 TRANSLATION nonsense_mediated_decay - - 1 89.0 0.0 1.2 0.0 45.9 0.0 3,-2 0.0 - -2.0 MINOR ENSMUSG00000121574 ENSMUSG00000121574 ENSMUST00000249246 ENSMUSP00000159626 TRANSLATION protein_coding - - - 35.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000079342 Lipo1 ENSMUST00000148137 ENSMUSP00000118385 TRANSLATION protein_coding - - 5 399.0 4.0 7.7 0.8 69.7 0.0 0,-3 0.8089 - 16.0 PRINCIPAL:1 ENSMUSG00000025076 Casp7 ENSMUST00000237055 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025076 Casp7 ENSMUST00000026062 ENSMUSP00000026062 TRANSLATION protein_coding - CCDS29915.1 1 303.0 4.0 5.33 9.2 194.0 0.0 -4,-5 1.0 12 19.0 PRINCIPAL:1 ENSMUSG00000025076 Casp7 ENSMUST00000235178 - NO_TRANSLATION retained_intron ENSMUSG00000025076 Casp7 ENSMUST00000235386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025076 Casp7 ENSMUST00000237765 - NO_TRANSLATION retained_intron ENSMUSG00000025076 Casp7 ENSMUST00000238892 ENSMUSP00000159062 TRANSLATION protein_coding stop - - 237.0 4.0 4.33 0.0 136.0 0.0 -4,-5 0.0002 6 -2.0 MINOR ENSMUSG00000061637 Or5b104 ENSMUST00000214561 ENSMUSP00000149056 TRANSLATION protein_coding - - 5 144.0 0.0 2.0 0.0 66.4 7.0 -4,-5 0.0021 - 4.806 MINOR ENSMUSG00000061637 Or5b104 ENSMUST00000215229 ENSMUSP00000150957 TRANSLATION protein_coding - CCDS29650.1 5 317.0 0.0 3.0 12.5 153.0 10.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000061637 Or5b104 ENSMUST00000208913 ENSMUSP00000147066 TRANSLATION protein_coding stop - 5 57.0 0.0 1.0 0.0 0.0 3.0 -4,-6 0.0002 - -2.0 MINOR ENSMUSG00000061637 Or5b104 ENSMUST00000075170 ENSMUSP00000074665 TRANSLATION protein_coding - CCDS29650.1 - 317.0 0.0 3.0 12.5 153.0 10.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024869 Gm49405 ENSMUST00000155405 ENSMUSP00000119218 TRANSLATION nonsense_mediated_decay,RT - CCDS29408.1 2 210.0 4.0 3.75 3.0 39.0 0.0 -4,-2 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000024669 Cd5 ENSMUST00000238167 ENSMUSP00000158313 TRANSLATION protein_coding - - - 449.0 0.0 1.625 0.0 37.7 1.0 0,-3 0.0803 8 5.202 ALTERNATIVE:2 ENSMUSG00000024669 Cd5 ENSMUST00000025571 ENSMUSP00000025571 TRANSLATION protein_coding - CCDS29586.1 1 494.0 0.0 1.875 0.4 37.7 1.0 0,-3 1.0 9 6.0 PRINCIPAL:2 ENSMUSG00000024669 Cd5 ENSMUST00000237397 - NO_TRANSLATION retained_intron ENSMUSG00000024669 Cd5 ENSMUST00000235856 ENSMUSP00000157817 TRANSLATION protein_coding start - - 129.0 0.0 0.0 0.0 0.0 1.0 -2,-5 0.0 1 -2.0 MINOR ENSMUSG00000024784 Gpha2 ENSMUST00000113526 ENSMUSP00000109154 TRANSLATION protein_coding - CCDS29498.1 5 128.0 0.0 2.2 3.6 21.4 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000024784 Gpha2 ENSMUST00000025698 ENSMUSP00000025698 TRANSLATION protein_coding - CCDS29498.1 1 128.0 0.0 2.2 3.6 21.4 0.0 4,-1 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000047632 Fgfbp3 ENSMUST00000238948 ENSMUSP00000159137 TRANSLATION protein_coding - CCDS29774.2 - 250.0 0.0 0.0 0.1 187.8 0.0 1,-4 0.4976 - 2.0 ALTERNATIVE:2 ENSMUSG00000047632 Fgfbp3 ENSMUST00000057337 ENSMUSP00000059682 TRANSLATION protein_coding - - 1 245.0 0.0 0.0 0.0 187.8 0.0 2,-2 0.7524 - 2.0 PRINCIPAL:2 ENSMUSG00000036748 Cuedc2 ENSMUST00000235485 ENSMUSP00000158425 TRANSLATION protein_coding - CCDS29876.1 - 284.0 0.0 0.0 9.8 21.5 0.0 -3,-6 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000036748 Cuedc2 ENSMUST00000236046 ENSMUSP00000157580 TRANSLATION protein_coding - CCDS29876.1 - 284.0 0.0 0.0 9.8 21.5 0.0 -3,-6 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000036748 Cuedc2 ENSMUST00000236236 ENSMUSP00000158548 TRANSLATION protein_coding stop - - 195.0 0.0 0.0 0.0 21.5 0.0 -3,-6 0.0196 4 -2.0 MINOR ENSMUSG00000036748 Cuedc2 ENSMUST00000238013 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036748 Cuedc2 ENSMUST00000236066 ENSMUSP00000158321 TRANSLATION protein_coding stop - - 72.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000036748 Cuedc2 ENSMUST00000167861 ENSMUSP00000129589 TRANSLATION protein_coding - CCDS29876.1 5 284.0 0.0 0.0 9.8 21.5 0.0 -3,-6 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000036748 Cuedc2 ENSMUST00000236651 ENSMUSP00000158251 TRANSLATION protein_coding stop - - 23.0 0.0 0.0 0.0 0.0 0.0 -3,-4 0.0 - -2.0 MINOR ENSMUSG00000036748 Cuedc2 ENSMUST00000235977 ENSMUSP00000158178 TRANSLATION protein_coding - - - 273.0 0.0 0.0 1.1 21.5 0.0 -3,-6 0.1747 5 6.033 MINOR ENSMUSG00000036748 Cuedc2 ENSMUST00000238062 ENSMUSP00000157629 TRANSLATION protein_coding stop - - 170.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 4 -2.0 MINOR ENSMUSG00000036748 Cuedc2 ENSMUST00000236061 ENSMUSP00000157840 TRANSLATION protein_coding - CCDS29876.1 - 284.0 0.0 0.0 9.8 21.5 0.0 -3,-6 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000036748 Cuedc2 ENSMUST00000236980 ENSMUSP00000158362 TRANSLATION protein_coding - - - 266.0 0.0 0.0 2.9 21.5 0.0 -3,-6 0.2006 4 6.648 MINOR ENSMUSG00000036748 Cuedc2 ENSMUST00000237382 - NO_TRANSLATION retained_intron ENSMUSG00000036748 Cuedc2 ENSMUST00000236768 ENSMUSP00000158517 TRANSLATION protein_coding stop - - 106.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 2 -2.0 MINOR ENSMUSG00000036748 Cuedc2 ENSMUST00000051234 ENSMUSP00000053469 TRANSLATION protein_coding - CCDS29876.1 5 284.0 0.0 0.0 9.8 21.5 0.0 -3,-6 1.0 6 9.0 PRINCIPAL:1 ENSMUSG00000025006 Sorbs1 ENSMUST00000225593 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025006 Sorbs1 ENSMUST00000225858 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025006 Sorbs1 ENSMUST00000224583 ENSMUSP00000153450 TRANSLATION protein_coding stop - - 28.0 0.0 0.0 0.0 26.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000224247 ENSMUSP00000152957 TRANSLATION protein_coding - - - 684.0 0.0 5.85 7.4 226.6 0.0 -4,-5 0.9606 36 10.0 ALTERNATIVE:1 ENSMUSG00000025006 Sorbs1 ENSMUST00000099466 ENSMUSP00000097065 TRANSLATION protein_coding - CCDS37979.1 5 740.0 0.0 5.85 7.4 226.6 0.0 -4,-5 1.0 40 10.0 PRINCIPAL:3 ENSMUSG00000025006 Sorbs1 ENSMUST00000225412 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025006 Sorbs1 ENSMUST00000224646 - NO_TRANSLATION retained_intron ENSMUSG00000025006 Sorbs1 ENSMUST00000239304 ENSMUSP00000159211 TRANSLATION protein_coding start - - 1005.0 0.0 5.85 0.0 226.6 0.0 -4,-6 0.1986 39 -2.0 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000223724 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025006 Sorbs1 ENSMUST00000099467 ENSMUSP00000097066 TRANSLATION protein_coding - CCDS37980.1 5 938.0 0.0 5.85 0.3 218.7 0.0 -4,-5 0.2716 39 8.0 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000225153 ENSMUSP00000153313 TRANSLATION protein_coding - CCDS37980.1 - 938.0 0.0 5.85 0.3 218.7 0.0 -4,-5 0.2716 39 8.0 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000225710 ENSMUSP00000153257 TRANSLATION protein_coding start - - 126.0 0.0 2.35 0.0 58.3 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000224227 - NO_TRANSLATION retained_intron ENSMUSG00000025006 Sorbs1 ENSMUST00000225148 ENSMUSP00000153097 TRANSLATION protein_coding - - - 684.0 0.0 5.85 7.4 226.6 0.0 -4,-5 0.9606 36 10.0 ALTERNATIVE:1 ENSMUSG00000025006 Sorbs1 ENSMUST00000225766 ENSMUSP00000159276 TRANSLATION protein_coding start/stop - - 352.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0013 10 -2.0 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000225293 - NO_TRANSLATION retained_intron ENSMUSG00000025006 Sorbs1 ENSMUST00000225306 - NO_TRANSLATION retained_intron ENSMUSG00000025006 Sorbs1 ENSMUST00000226028 - NO_TRANSLATION retained_intron ENSMUSG00000025006 Sorbs1 ENSMUST00000226047 ENSMUSP00000153489 TRANSLATION protein_coding - - - 695.0 0.0 5.85 0.7 226.6 0.0 -4,-5 0.2832 36 8.0 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000225879 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025006 Sorbs1 ENSMUST00000225628 - NO_TRANSLATION retained_intron ENSMUSG00000025006 Sorbs1 ENSMUST00000165469 ENSMUSP00000125768 TRANSLATION protein_coding - CCDS37981.1 5 714.0 0.0 5.85 1.3 226.6 0.0 -4,-5 0.4818 36 8.094 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000224233 ENSMUSP00000153080 TRANSLATION protein_coding stop - - 170.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000165212 ENSMUSP00000126460 TRANSLATION protein_coding - CCDS37978.1 5 724.0 0.0 5.85 0.0 226.6 0.0 -4,-5 0.2522 36 8.0 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000224667 ENSMUSP00000153009 TRANSLATION protein_coding - - - 1290.0 0.0 5.85 0.0 226.6 0.0 -4,-5 0.2717 51 8.0 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000225786 ENSMUSP00000153336 TRANSLATION protein_coding - CCDS37981.1 - 714.0 0.0 5.85 1.3 226.6 0.0 -4,-5 0.4818 36 8.094 MINOR ENSMUSG00000025006 Sorbs1 ENSMUST00000238831 ENSMUSP00000158996 TRANSLATION protein_coding - - - 1189.0 0.0 5.85 0.0 218.7 0.0 -4,-5 0.1003 42 8.0 MINOR ENSMUSG00000046272 Or5b21 ENSMUST00000213606 ENSMUSP00000150212 TRANSLATION protein_coding - CCDS29640.1 5 319.0 0.0 1.0 4.2 180.9 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000046272 Or5b21 ENSMUST00000059675 ENSMUSP00000062460 TRANSLATION protein_coding - CCDS29640.1 - 319.0 0.0 1.0 4.2 180.9 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035818 Plekhs1 ENSMUST00000178590 ENSMUSP00000136674 TRANSLATION protein_coding - CCDS57148.1 1 474.0 12.0 1.05 0.0 27.6 0.0 -4,-5 0.9294 6 13.478 ALTERNATIVE:2 ENSMUSG00000035818 Plekhs1 ENSMUST00000225008 - NO_TRANSLATION retained_intron ENSMUSG00000035818 Plekhs1 ENSMUST00000224840 - NO_TRANSLATION retained_intron ENSMUSG00000035818 Plekhs1 ENSMUST00000039666 ENSMUSP00000035440 TRANSLATION protein_coding - CCDS29916.1 1 474.0 12.0 1.15 1.0 26.9 0.0 -4,-5 0.9439 6 14.0 PRINCIPAL:4 ENSMUSG00000035818 Plekhs1 ENSMUST00000225391 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035818 Plekhs1 ENSMUST00000225909 ENSMUSP00000153530 TRANSLATION protein_coding stop - - 249.0 12.0 1.05 0.0 27.6 0.0 -4,-5 0.0315 5 -2.0 MINOR ENSMUSG00000047207 Or10q12 ENSMUST00000215930 ENSMUSP00000149223 TRANSLATION protein_coding - CCDS29671.1 5 319.0 0.0 1.0 7.5 177.3 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047207 Or10q12 ENSMUST00000216980 ENSMUSP00000150205 TRANSLATION protein_coding - CCDS29671.1 5 319.0 0.0 1.0 7.5 177.3 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047207 Or10q12 ENSMUST00000061669 ENSMUSP00000057468 TRANSLATION protein_coding - CCDS29671.1 - 319.0 0.0 1.0 7.5 177.3 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025197 Cyp2c23 ENSMUST00000026211 ENSMUSP00000026211 TRANSLATION protein_coding - CCDS29841.1 1 494.0 34.0 8.8 9.9 501.4 0.0 2,-3 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000025197 Cyp2c23 ENSMUST00000211830 ENSMUSP00000148377 TRANSLATION protein_coding - CCDS84445.1 1 456.0 32.0 8.175 0.0 441.6 0.0 2,-3 0.0348 11 11.832 MINOR ENSMUSG00000046008 Pnlip ENSMUST00000237451 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046008 Pnlip ENSMUST00000237426 - NO_TRANSLATION retained_intron ENSMUSG00000046008 Pnlip ENSMUST00000238108 ENSMUSP00000157401 TRANSLATION protein_coding stop - - 190.0 5.0 4.0 0.0 249.7 0.0 4,-1 0.0 7 -2.0 MINOR ENSMUSG00000046008 Pnlip ENSMUST00000057270 ENSMUSP00000056377 TRANSLATION protein_coding - CCDS29930.1 1 465.0 15.0 10.75 19.1 598.6 0.0 4,-1 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000024835 Coro1b ENSMUST00000236397 ENSMUSP00000158099 TRANSLATION nonsense_mediated_decay - - - 138.0 0.0 2.0 0.0 117.5 0.0 -4,-1 0.0 3 -2.0 MINOR ENSMUSG00000024835 Coro1b ENSMUST00000134194 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024835 Coro1b ENSMUST00000237125 ENSMUSP00000157859 TRANSLATION protein_coding stop - - 251.0 0.0 6.08 0.0 175.1 0.0 -4,-1 0.0033 6 -2.0 MINOR ENSMUSG00000024835 Coro1b ENSMUST00000008893 ENSMUSP00000008893 TRANSLATION protein_coding - CCDS29418.1 1 484.0 0.0 9.38 15.6 245.8 0.0 -4,-1 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000024835 Coro1b ENSMUST00000143613 - NO_TRANSLATION retained_intron ENSMUSG00000024835 Coro1b ENSMUST00000236023 - NO_TRANSLATION retained_intron ENSMUSG00000024835 Coro1b ENSMUST00000140419 - NO_TRANSLATION retained_intron ENSMUSG00000024835 Coro1b ENSMUST00000123874 ENSMUSP00000118450 TRANSLATION protein_coding stop - 2 173.0 0.0 3.75 0.0 159.4 0.0 -4,-1 0.0 4 -2.0 MINOR ENSMUSG00000024835 Coro1b ENSMUST00000135498 - NO_TRANSLATION retained_intron ENSMUSG00000024835 Coro1b ENSMUST00000235477 - NO_TRANSLATION retained_intron ENSMUSG00000024835 Coro1b ENSMUST00000142878 - NO_TRANSLATION retained_intron ENSMUSG00000024835 Coro1b ENSMUST00000148189 - NO_TRANSLATION retained_intron ENSMUSG00000024835 Coro1b ENSMUST00000148733 - NO_TRANSLATION retained_intron ENSMUSG00000024835 Coro1b ENSMUST00000237578 - NO_TRANSLATION retained_intron ENSMUSG00000062432 Cyp26c1 ENSMUST00000073391 ENSMUSP00000073105 TRANSLATION protein_coding - CCDS50428.1 1 518.0 27.0 2.565 10.7 176.7 0.0 0,-4 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000108929 Cc2d2b ENSMUST00000207801 ENSMUSP00000146979 TRANSLATION protein_coding - - 5 1061.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.026 - 0.0 MINOR ENSMUSG00000108929 Cc2d2b ENSMUST00000207791 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000108929 Cc2d2b ENSMUST00000207165 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000108929 Cc2d2b ENSMUST00000207863 ENSMUSP00000146608 TRANSLATION protein_coding start/stop - 5 121.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000108929 Cc2d2b ENSMUST00000224596 ENSMUSP00000153384 TRANSLATION protein_coding - - - 1405.0 0.0 0.0 0.0 177.7 0.0 -4,-5 0.9203 - 6.0 PRINCIPAL:1 ENSMUSG00000096485 Or5b112 ENSMUST00000075868 ENSMUSP00000075265 TRANSLATION protein_coding - CCDS29656.1 - 310.0 0.0 1.0 8.2 165.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096485 Or5b112 ENSMUST00000207124 ENSMUSP00000147188 TRANSLATION protein_coding - CCDS29656.1 3 310.0 0.0 1.0 8.2 165.9 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043639 Rbm20 ENSMUST00000162910 ENSMUSP00000158014 TRANSLATION protein_coding stop - 2 68.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.031 - -2.0 MINOR ENSMUSG00000043639 Rbm20 ENSMUST00000161856 ENSMUSP00000124363 TRANSLATION nonsense_mediated_decay start - 1 507.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0751 1 -2.0 MINOR ENSMUSG00000043639 Rbm20 ENSMUST00000164202 ENSMUSP00000129447 TRANSLATION protein_coding - CCDS50468.1 5 1199.0 7.0 2.75 0.0 0.0 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000041360 Pum3 ENSMUST00000236585 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041360 Pum3 ENSMUST00000076219 ENSMUSP00000075573 TRANSLATION protein_coding - CCDS29723.1 1 648.0 0.0 13.1 10.3 168.0 0.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000041360 Pum3 ENSMUST00000236041 - NO_TRANSLATION retained_intron ENSMUSG00000041360 Pum3 ENSMUST00000236705 - NO_TRANSLATION retained_intron ENSMUSG00000041360 Pum3 ENSMUST00000235631 - NO_TRANSLATION retained_intron ENSMUSG00000041360 Pum3 ENSMUST00000235852 - NO_TRANSLATION retained_intron ENSMUSG00000041360 Pum3 ENSMUST00000237274 - NO_TRANSLATION retained_intron ENSMUSG00000041360 Pum3 ENSMUST00000235859 ENSMUSP00000158369 TRANSLATION nonsense_mediated_decay - - - 300.0 0.0 4.1 0.0 0.0 0.0 -4,-5 0.0009 6 -2.0 MINOR ENSMUSG00000041360 Pum3 ENSMUST00000236702 ENSMUSP00000157590 TRANSLATION protein_coding stop - - 91.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041360 Pum3 ENSMUST00000235297 ENSMUSP00000158485 TRANSLATION protein_coding start - - 404.0 0.0 7.35 0.0 0.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000012443 Kif11 ENSMUST00000236027 - NO_TRANSLATION retained_intron ENSMUSG00000012443 Kif11 ENSMUST00000012587 ENSMUSP00000012587 TRANSLATION protein_coding - CCDS29777.1 1 1052.0 12.0 9.599 7.3 532.0 0.0 -4,-2 1.0 14 20.0 PRINCIPAL:1 ENSMUSG00000094133 Or5an9 ENSMUST00000072316 ENSMUSP00000072158 TRANSLATION protein_coding - CCDS29624.1 - 312.0 0.0 1.0 9.8 187.8 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094133 Or5an9 ENSMUST00000214138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094133 Or5an9 ENSMUST00000213759 ENSMUSP00000150967 TRANSLATION protein_coding - CCDS29624.1 5 312.0 0.0 1.0 9.8 187.8 5.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048720 Tbc1d12 ENSMUST00000037302 ENSMUSP00000037884 TRANSLATION protein_coding - CCDS37975.1 1 698.0 0.0 6.62 0.4 167.5 0.0 -4,-5 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000048720 Tbc1d12 ENSMUST00000235558 ENSMUSP00000157901 TRANSLATION protein_coding - - - 623.0 0.0 5.22 0.4 158.2 0.0 -4,-5 0.0035 8 8.64 MINOR ENSMUSG00000096365 Or5b109 ENSMUST00000064102 ENSMUSP00000070872 TRANSLATION protein_coding - CCDS29654.1 - 310.0 0.0 1.0 8.2 174.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096365 Or5b109 ENSMUST00000207246 ENSMUSP00000146566 TRANSLATION protein_coding - CCDS29654.1 2 310.0 0.0 1.0 8.2 174.4 6.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025082 Vwa2 ENSMUST00000026068 ENSMUSP00000026068 TRANSLATION protein_coding - CCDS29923.1 1 791.0 8.0 4.639 0.0 335.2 0.0 2,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000024925 Rnaseh2c ENSMUST00000236461 ENSMUSP00000157589 TRANSLATION protein_coding start - - 153.0 0.0 3.8 0.0 88.1 0.0 -4,-1 0.008 4 -2.0 MINOR ENSMUSG00000024925 Rnaseh2c ENSMUST00000133953 - NO_TRANSLATION retained_intron ENSMUSG00000024925 Rnaseh2c ENSMUST00000136226 ENSMUSP00000117615 TRANSLATION protein_coding start - 3 88.0 0.0 1.8 0.0 42.2 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024925 Rnaseh2c ENSMUST00000155639 ENSMUSP00000158448 TRANSLATION protein_coding start - 2 168.0 0.0 3.3 0.0 88.1 0.0 -4,-7 0.0624 4 -2.0 MINOR ENSMUSG00000024925 Rnaseh2c ENSMUST00000025864 ENSMUSP00000025864 TRANSLATION protein_coding - CCDS29471.1 1 166.0 0.0 4.262 8.7 88.7 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000024925 Rnaseh2c ENSMUST00000127071 - NO_TRANSLATION retained_intron ENSMUSG00000010663 Fads1 ENSMUST00000237221 - NO_TRANSLATION retained_intron ENSMUSG00000010663 Fads1 ENSMUST00000238115 - NO_TRANSLATION retained_intron ENSMUSG00000010663 Fads1 ENSMUST00000236594 ENSMUSP00000158468 TRANSLATION protein_coding stop - - 179.0 1.0 4.25 0.0 39.1 5.0 -4,-5 0.0037 2 -2.0 MINOR ENSMUSG00000010663 Fads1 ENSMUST00000010807 ENSMUSP00000010807 TRANSLATION protein_coding - CCDS29572.1 1 447.0 20.0 10.75 6.9 190.1 5.0 -4,-6 1.0 8 20.0 PRINCIPAL:1 ENSMUSG00000010663 Fads1 ENSMUST00000237861 ENSMUSP00000157714 TRANSLATION protein_coding start - - 110.0 0.0 3.18 0.0 51.2 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000010663 Fads1 ENSMUST00000235515 ENSMUSP00000158041 TRANSLATION nonsense_mediated_decay - - - 112.0 20.0 2.25 0.0 75.8 0.0 -4,-7 0.0005 4 -2.0 MINOR ENSMUSG00000010663 Fads1 ENSMUST00000235160 ENSMUSP00000158460 TRANSLATION protein_coding - - - 410.0 13.0 9.5 0.0 173.5 5.0 -4,-7 0.015 6 9.834 MINOR ENSMUSG00000010663 Fads1 ENSMUST00000236385 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000003053 Cyp2c29 ENSMUST00000003137 ENSMUSP00000003137 TRANSLATION protein_coding - CCDS29793.1 1 490.0 52.0 9.0 10.3 545.4 0.0 3,-2 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000003053 Cyp2c29 ENSMUST00000177087 ENSMUSP00000135839 TRANSLATION nonsense_mediated_decay - - 5 120.0 2.0 2.198 0.0 72.3 0.0 3,-2 0.0009 3 -2.0 MINOR ENSMUSG00000003053 Cyp2c29 ENSMUST00000176624 ENSMUSP00000135863 TRANSLATION protein_coding - - 1 451.0 52.0 8.24 0.0 515.8 0.0 -4,-5 0.0617 6 14.706 MINOR ENSMUSG00000110949 Nudt8 ENSMUST00000025802 ENSMUSP00000025802 TRANSLATION protein_coding - CCDS29408.1 1 210.0 4.0 3.75 3.0 39.0 0.0 -4,-2 1.0 8 17.0 PRINCIPAL:1 ENSMUSG00000110949 Nudt8 ENSMUST00000122924 - NO_TRANSLATION retained_intron ENSMUSG00000045903 Npas4 ENSMUST00000056129 ENSMUSP00000062992 TRANSLATION protein_coding - CCDS29445.1 1 802.0 0.0 2.865 0.0 66.9 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045903 Npas4 ENSMUST00000237172 - NO_TRANSLATION retained_intron ENSMUSG00000045903 Npas4 ENSMUST00000237881 ENSMUSP00000157974 TRANSLATION nonsense_mediated_decay - - - 236.0 0.0 2.2 1.0 21.1 0.0 -4,-6 0.0084 - -2.0 MINOR ENSMUSG00000025159 Mms19 ENSMUST00000171561 ENSMUSP00000130900 TRANSLATION protein_coding - CCDS29818.1 1 1031.0 0.0 26.824 0.7 673.2 0.0 -4,-7 1.0 22 12.0 PRINCIPAL:1 ENSMUSG00000025159 Mms19 ENSMUST00000163287 ENSMUSP00000128653 TRANSLATION protein_coding start - 5 885.0 0.0 23.56 0.0 666.8 0.0 -4,-6 0.0923 18 -2.0 MINOR ENSMUSG00000025159 Mms19 ENSMUST00000167820 ENSMUSP00000130399 TRANSLATION protein_coding start/stop - 3 286.0 0.0 5.33 0.0 174.4 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000025159 Mms19 ENSMUST00000169933 - NO_TRANSLATION retained_intron ENSMUSG00000025159 Mms19 ENSMUST00000169765 ENSMUSP00000133075 TRANSLATION protein_coding start/stop - 5 129.0 0.0 4.254 0.0 51.5 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025159 Mms19 ENSMUST00000171755 - NO_TRANSLATION retained_intron ENSMUSG00000025159 Mms19 ENSMUST00000168737 - NO_TRANSLATION retained_intron ENSMUSG00000025159 Mms19 ENSMUST00000163398 ENSMUSP00000126864 TRANSLATION nonsense_mediated_decay - - 5 75.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025159 Mms19 ENSMUST00000170209 - NO_TRANSLATION retained_intron ENSMUSG00000025159 Mms19 ENSMUST00000164776 ENSMUSP00000129478 TRANSLATION nonsense_mediated_decay - - 5 75.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025159 Mms19 ENSMUST00000026168 ENSMUSP00000026168 TRANSLATION protein_coding - - 5 988.0 0.0 25.164 0.0 568.5 0.0 -4,-7 0.0733 22 2.682 MINOR ENSMUSG00000025159 Mms19 ENSMUST00000166517 - NO_TRANSLATION retained_intron ENSMUSG00000025159 Mms19 ENSMUST00000169779 - NO_TRANSLATION retained_intron ENSMUSG00000025159 Mms19 ENSMUST00000167927 ENSMUSP00000132483 TRANSLATION nonsense_mediated_decay - - 2 357.0 0.0 10.504 0.0 294.5 0.0 -4,-7 0.0009 7 -2.0 MINOR ENSMUSG00000025159 Mms19 ENSMUST00000166090 ENSMUSP00000131219 TRANSLATION nonsense_mediated_decay start - 5 501.0 0.0 10.66 0.0 316.0 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000025159 Mms19 ENSMUST00000165043 - NO_TRANSLATION retained_intron ENSMUSG00000025159 Mms19 ENSMUST00000168484 ENSMUSP00000126881 TRANSLATION nonsense_mediated_decay - - 1 357.0 0.0 10.504 0.0 294.5 0.0 -4,-7 0.0009 - -2.0 MINOR ENSMUSG00000025159 Mms19 ENSMUST00000169775 ENSMUSP00000128234 TRANSLATION nonsense_mediated_decay - - 1 174.0 0.0 4.844 0.0 84.7 0.0 -4,-7 0.0005 2 -2.0 MINOR ENSMUSG00000038498 Catsper1 ENSMUST00000235380 ENSMUSP00000157759 TRANSLATION protein_coding start - - 496.0 0.0 3.075 0.0 63.6 5.0 -4,-6 0.0078 - -2.0 MINOR ENSMUSG00000038498 Catsper1 ENSMUST00000043380 ENSMUSP00000045430 TRANSLATION protein_coding - CCDS29456.1 1 686.0 0.0 4.075 0.0 113.8 6.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000074913 Gm815 ENSMUST00000099536 ENSMUSP00000097134 TRANSLATION protein_coding - CCDS50410.1 1 115.0 2.0 0.0 0.0 0.0 0.0 -2,-4 0.8347 - 2.0 PRINCIPAL:2 ENSMUSG00000074913 Gm815 ENSMUST00000235850 ENSMUSP00000158031 TRANSLATION protein_coding - - - 83.0 2.0 0.0 0.0 0.0 0.0 -4,-2 0.0408 - 2.0 ALTERNATIVE:2 ENSMUSG00000024935 Slc1a1 ENSMUST00000237545 - NO_TRANSLATION retained_intron ENSMUSG00000024935 Slc1a1 ENSMUST00000160702 - NO_TRANSLATION retained_intron ENSMUSG00000024935 Slc1a1 ENSMUST00000161119 - NO_TRANSLATION retained_intron ENSMUSG00000024935 Slc1a1 ENSMUST00000025875 ENSMUSP00000025875 TRANSLATION protein_coding - CCDS29727.1 1 523.0 0.0 8.715 21.9 448.7 0.0 -2,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000024935 Slc1a1 ENSMUST00000162189 - NO_TRANSLATION retained_intron ENSMUSG00000024935 Slc1a1 ENSMUST00000161340 - NO_TRANSLATION retained_intron ENSMUSG00000056829 Foxb2 ENSMUST00000072915 ENSMUSP00000072687 TRANSLATION protein_coding - CCDS29686.1 - 428.0 0.0 0.4 1.6 120.3 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000024878 Zng1 ENSMUST00000236250 ENSMUSP00000157754 TRANSLATION nonsense_mediated_decay start - - 62.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024878 Zng1 ENSMUST00000237315 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024878 Zng1 ENSMUST00000235225 - NO_TRANSLATION retained_intron ENSMUSG00000024878 Zng1 ENSMUST00000236790 ENSMUSP00000158317 TRANSLATION nonsense_mediated_decay - - - 51.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024878 Zng1 ENSMUST00000025815 ENSMUSP00000025815 TRANSLATION protein_coding - CCDS37942.1 1 393.0 12.0 2.323 5.0 60.4 0.0 -4,-5 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000074811 Hps6 ENSMUST00000099393 ENSMUSP00000096991 TRANSLATION protein_coding - CCDS29869.1 - 805.0 0.0 0.0 3.3 925.2 0.0 -4,-1 1.0 12 7.0 PRINCIPAL:1 ENSMUSG00000024735 Prpf19 ENSMUST00000179297 ENSMUSP00000136858 TRANSLATION protein_coding - CCDS57135.1 1 523.0 0.0 11.235 0.4 225.3 0.0 -4,-5 0.135 13 9.06 MINOR ENSMUSG00000024735 Prpf19 ENSMUST00000190275 - NO_TRANSLATION retained_intron ENSMUSG00000024735 Prpf19 ENSMUST00000187751 - NO_TRANSLATION retained_intron ENSMUSG00000024735 Prpf19 ENSMUST00000178868 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024735 Prpf19 ENSMUST00000186416 - NO_TRANSLATION retained_intron ENSMUSG00000024735 Prpf19 ENSMUST00000191092 - NO_TRANSLATION retained_intron ENSMUSG00000024735 Prpf19 ENSMUST00000191552 - NO_TRANSLATION retained_intron ENSMUSG00000024735 Prpf19 ENSMUST00000025642 ENSMUSP00000025642 TRANSLATION protein_coding - CCDS79687.1 1 504.0 0.0 11.735 33.9 257.6 0.0 -4,-5 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000056209 Npm3 ENSMUST00000144165 - NO_TRANSLATION retained_intron ENSMUSG00000056209 Npm3 ENSMUST00000070215 ENSMUSP00000069578 TRANSLATION protein_coding - CCDS29865.1 1 175.0 0.0 3.35 6.5 122.1 0.0 -2,1 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000024772 Ehd1 ENSMUST00000171203 - NO_TRANSLATION retained_intron ENSMUSG00000024772 Ehd1 ENSMUST00000025684 ENSMUSP00000025684 TRANSLATION protein_coding - CCDS29501.1 1 534.0 13.0 4.33 35.8 110.6 0.0 -4,-7 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000024772 Ehd1 ENSMUST00000148547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024772 Ehd1 ENSMUST00000165797 - NO_TRANSLATION retained_intron ENSMUSG00000024963 Dnajc4 ENSMUST00000235444 - NO_TRANSLATION retained_intron ENSMUSG00000024963 Dnajc4 ENSMUST00000236113 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024963 Dnajc4 ENSMUST00000235481 ENSMUSP00000157797 TRANSLATION nonsense_mediated_decay - - - 88.0 0.0 0.16 0.0 0.0 0.0 -3,-2 0.0 - -2.0 MINOR ENSMUSG00000024963 Dnajc4 ENSMUST00000025915 ENSMUSP00000025915 TRANSLATION protein_coding - - 1 261.0 0.0 2.0475 0.1 75.4 1.0 -2,-4 0.7533 2 8.0 PRINCIPAL:2 ENSMUSG00000024963 Dnajc4 ENSMUST00000179118 ENSMUSP00000136062 TRANSLATION protein_coding - CCDS50374.1 1 244.0 0.0 2.0475 0.1 75.4 1.0 -3,0 0.3911 2 8.0 ALTERNATIVE:2 ENSMUSG00000054827 Cyp2c50 ENSMUST00000080171 ENSMUSP00000079065 TRANSLATION protein_coding - CCDS29801.1 1 490.0 34.0 9.0 10.3 537.7 0.0 0,-4 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000054827 Cyp2c50 ENSMUST00000124391 - NO_TRANSLATION retained_intron ENSMUSG00000054827 Cyp2c50 ENSMUST00000068094 ENSMUSP00000068039 TRANSLATION protein_coding - CCDS50433.1 1 431.0 31.0 8.0 2.4 471.1 0.0 0,-4 0.0951 4 10.461 MINOR ENSMUSG00000067231 Cyp2c65 ENSMUST00000087236 ENSMUSP00000084489 TRANSLATION protein_coding - CCDS29791.1 1 490.0 52.0 9.0 5.2 529.3 0.0 2,-2 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000024789 Jak2 ENSMUST00000236990 ENSMUSP00000158405 TRANSLATION protein_coding stop - - 638.0 0.0 9.478 0.0 90.6 0.0 -4,-5 0.0006 13 -2.0 MINOR ENSMUSG00000024789 Jak2 ENSMUST00000025705 ENSMUSP00000025705 TRANSLATION protein_coding - CCDS37950.1 5 1132.0 0.0 20.228 22.4 521.4 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000024789 Jak2 ENSMUST00000065796 ENSMUSP00000064394 TRANSLATION protein_coding - CCDS37950.1 5 1132.0 0.0 20.228 22.4 521.4 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000024789 Jak2 ENSMUST00000238009 ENSMUSP00000158242 TRANSLATION protein_coding - CCDS37950.1 - 1132.0 0.0 20.228 22.4 521.4 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000025184 R3hcc1l ENSMUST00000160107 ENSMUSP00000124036 TRANSLATION protein_coding - - 2 195.0 0.0 4.5 0.0 0.0 0.0 -4,-5 0.0567 2 6.0 ALTERNATIVE:2 ENSMUSG00000025184 R3hcc1l ENSMUST00000162238 - NO_TRANSLATION retained_intron ENSMUSG00000025184 R3hcc1l ENSMUST00000161422 - NO_TRANSLATION retained_intron ENSMUSG00000025184 R3hcc1l ENSMUST00000160893 ENSMUSP00000125554 TRANSLATION protein_coding stop - 5 195.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.033 3 -2.0 MINOR ENSMUSG00000025184 R3hcc1l ENSMUST00000026188 ENSMUSP00000026188 TRANSLATION protein_coding - CCDS29829.1 1 775.0 0.0 4.5 0.1 0.0 0.0 -4,-7 1.0 9 6.0 PRINCIPAL:2 ENSMUSG00000024970 Spindoc ENSMUST00000235678 ENSMUSP00000158438 TRANSLATION protein_coding start - - 72.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0207 1 -2.0 MINOR ENSMUSG00000024970 Spindoc ENSMUST00000237653 ENSMUSP00000158436 TRANSLATION protein_coding start - - 270.0 4.0 1.8 0.0 0.0 0.0 -4,-5 0.0308 3 -2.0 MINOR ENSMUSG00000024970 Spindoc ENSMUST00000025924 ENSMUSP00000025924 TRANSLATION protein_coding - CCDS29523.1 1 381.0 4.0 1.8 7.8 0.0 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000024970 Spindoc ENSMUST00000236817 - NO_TRANSLATION retained_intron ENSMUSG00000024998 Plce1 ENSMUST00000182999 ENSMUSP00000138098 TRANSLATION protein_coding stop - 3 74.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000024998 Plce1 ENSMUST00000181994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024998 Plce1 ENSMUST00000183131 - NO_TRANSLATION retained_intron ENSMUSG00000024998 Plce1 ENSMUST00000182267 ENSMUSP00000138330 TRANSLATION protein_coding - - 1 2296.0 6.0 12.112 3.1 498.4 0.0 -4,-6 0.6654 21 14.934 ALTERNATIVE:2 ENSMUSG00000024998 Plce1 ENSMUST00000169713 ENSMUSP00000130604 TRANSLATION protein_coding - CCDS37973.1 1 2282.0 6.0 12.112 5.5 498.4 0.0 -4,-6 1.0 21 16.0 PRINCIPAL:2 ENSMUSG00000024998 Plce1 ENSMUST00000182481 ENSMUSP00000138360 TRANSLATION protein_coding - CCDS37973.1 5 2282.0 6.0 12.112 5.5 498.4 0.0 -4,-6 1.0 21 16.0 PRINCIPAL:2 ENSMUSG00000024998 Plce1 ENSMUST00000182589 - NO_TRANSLATION retained_intron ENSMUSG00000040247 Tbc1d10c ENSMUST00000235450 ENSMUSP00000158437 TRANSLATION protein_coding - CCDS37885.1 - 444.0 0.0 6.89 9.8 180.7 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000040247 Tbc1d10c ENSMUST00000235782 ENSMUSP00000157997 TRANSLATION nonsense_mediated_decay - - - 189.0 0.0 3.11 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040247 Tbc1d10c ENSMUST00000237206 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040247 Tbc1d10c ENSMUST00000237495 ENSMUSP00000158341 TRANSLATION protein_coding - - - 179.0 0.0 2.88375 0.0 0.0 0.0 -4,-5 0.0 2 0.0 MINOR ENSMUSG00000040247 Tbc1d10c ENSMUST00000236890 ENSMUSP00000158002 TRANSLATION nonsense_mediated_decay - - - 192.0 0.0 3.84 0.0 63.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040247 Tbc1d10c ENSMUST00000236719 - NO_TRANSLATION retained_intron ENSMUSG00000040247 Tbc1d10c ENSMUST00000045864 ENSMUSP00000042660 TRANSLATION protein_coding - - 1 427.0 0.0 6.39 0.0 144.1 0.0 -4,-5 0.012 6 8.802 MINOR ENSMUSG00000040247 Tbc1d10c ENSMUST00000236780 ENSMUSP00000158519 TRANSLATION nonsense_mediated_decay - - - 179.0 0.0 2.88375 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000040247 Tbc1d10c ENSMUST00000238094 - NO_TRANSLATION retained_intron ENSMUSG00000040247 Tbc1d10c ENSMUST00000235487 ENSMUSP00000158162 TRANSLATION nonsense_mediated_decay - - - 179.0 0.0 2.88375 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024681 Ms4a3 ENSMUST00000190642 - NO_TRANSLATION retained_intron ENSMUSG00000024681 Ms4a3 ENSMUST00000186023 ENSMUSP00000140508 TRANSLATION protein_coding - CCDS29605.1 1 213.0 0.0 2.2 0.1 119.6 3.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024681 Ms4a3 ENSMUST00000112984 ENSMUSP00000108608 TRANSLATION protein_coding - CCDS29605.1 1 213.0 0.0 2.2 0.1 119.6 3.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035804 Ins1 ENSMUST00000039652 ENSMUSP00000049095 TRANSLATION protein_coding - CCDS29898.1 1 108.0 0.0 1.0 11.1 92.5 0.0 3,-1 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024734 Zp1 ENSMUST00000168708 ENSMUSP00000128543 TRANSLATION protein_coding start - 3 95.0 0.0 0.225 0.0 23.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024734 Zp1 ENSMUST00000025641 ENSMUSP00000025641 TRANSLATION protein_coding - CCDS37918.1 1 623.0 0.0 2.375 0.0 178.4 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024806 Mlana ENSMUST00000235954 ENSMUSP00000158536 TRANSLATION nonsense_mediated_decay - - - 96.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000024806 Mlana ENSMUST00000025719 ENSMUSP00000025719 TRANSLATION protein_coding - CCDS29739.1 1 113.0 0.0 1.08 11.0 156.2 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000040385 Ppp1ca ENSMUST00000237734 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040385 Ppp1ca ENSMUST00000236181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040385 Ppp1ca ENSMUST00000237096 - NO_TRANSLATION retained_intron ENSMUSG00000040385 Ppp1ca ENSMUST00000235739 - NO_TRANSLATION retained_intron ENSMUSG00000040385 Ppp1ca ENSMUST00000236921 - NO_TRANSLATION retained_intron ENSMUSG00000040385 Ppp1ca ENSMUST00000046094 ENSMUSP00000039109 TRANSLATION protein_coding - CCDS29421.1 1 330.0 10.0 5.9 31.2 217.4 0.0 -4,-5 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000040385 Ppp1ca ENSMUST00000236718 - NO_TRANSLATION retained_intron ENSMUSG00000040385 Ppp1ca ENSMUST00000236168 - NO_TRANSLATION retained_intron ENSMUSG00000025041 Nt5c2 ENSMUST00000236924 ENSMUSP00000158535 TRANSLATION protein_coding stop - - 97.0 3.0 2.99 0.0 89.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025041 Nt5c2 ENSMUST00000236501 ENSMUSP00000158280 TRANSLATION protein_coding - CCDS29883.1 - 560.0 3.0 13.44 14.8 588.1 0.0 -4,-5 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000025041 Nt5c2 ENSMUST00000235596 ENSMUSP00000157854 TRANSLATION nonsense_mediated_decay - - - 62.0 4.0 1.99 0.0 38.7 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000025041 Nt5c2 ENSMUST00000235234 ENSMUSP00000157802 TRANSLATION protein_coding - CCDS50461.1 - 585.0 3.0 13.44 0.0 588.1 0.0 -4,0 0.2032 15 15.0 MINOR ENSMUSG00000025041 Nt5c2 ENSMUST00000237658 - NO_TRANSLATION retained_intron ENSMUSG00000025041 Nt5c2 ENSMUST00000086961 ENSMUSP00000084180 TRANSLATION nonsense_mediated_decay - - 5 251.0 3.0 5.49 0.0 201.5 0.0 -4,0 0.0004 3 -2.0 MINOR ENSMUSG00000025041 Nt5c2 ENSMUST00000237639 ENSMUSP00000158192 TRANSLATION nonsense_mediated_decay - - - 62.0 4.0 1.99 0.0 38.7 0.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000025041 Nt5c2 ENSMUST00000236783 ENSMUSP00000158526 TRANSLATION protein_coding stop - - 87.0 3.0 2.66 0.0 123.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025041 Nt5c2 ENSMUST00000236727 ENSMUSP00000158576 TRANSLATION protein_coding - - - 528.0 3.0 12.44 4.3 588.1 0.0 -4,-6 0.1817 14 13.958 MINOR ENSMUSG00000025041 Nt5c2 ENSMUST00000238106 ENSMUSP00000158569 TRANSLATION protein_coding stop - - 59.0 4.0 1.99 0.0 38.7 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000025041 Nt5c2 ENSMUST00000235296 - NO_TRANSLATION retained_intron ENSMUSG00000025041 Nt5c2 ENSMUST00000172239 ENSMUSP00000130898 TRANSLATION protein_coding - CCDS50462.1 5 586.0 3.0 13.44 0.4 588.1 0.0 -4,-2 0.2724 15 15.0 MINOR ENSMUSG00000025041 Nt5c2 ENSMUST00000168536 ENSMUSP00000129126 TRANSLATION protein_coding - CCDS29883.1 1 560.0 3.0 13.44 14.8 588.1 0.0 -4,-5 1.0 15 19.0 PRINCIPAL:1 ENSMUSG00000025041 Nt5c2 ENSMUST00000235926 ENSMUSP00000158103 TRANSLATION nonsense_mediated_decay - - - 78.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025041 Nt5c2 ENSMUST00000174731 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025091 Pnliprp2 ENSMUST00000026081 ENSMUSP00000026081 TRANSLATION protein_coding - CCDS38030.1 1 482.0 13.0 10.75 0.1 599.8 0.0 3,-2 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000048120 Entpd1 ENSMUST00000137508 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048120 Entpd1 ENSMUST00000163023 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048120 Entpd1 ENSMUST00000112231 ENSMUSP00000107850 TRANSLATION protein_coding - CCDS50434.1 1 510.0 0.0 10.266 6.3 558.3 3.0 -4,-7 1.0 10 14.0 PRINCIPAL:1 ENSMUSG00000048120 Entpd1 ENSMUST00000127268 ENSMUSP00000116895 TRANSLATION protein_coding start - 3 235.0 0.0 3.85 0.0 233.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000048120 Entpd1 ENSMUST00000151726 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048120 Entpd1 ENSMUST00000144080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048120 Entpd1 ENSMUST00000127828 ENSMUSP00000117213 TRANSLATION protein_coding stop - 3 63.0 0.0 2.0 0.0 70.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000048120 Entpd1 ENSMUST00000156598 ENSMUSP00000116349 TRANSLATION nonsense_mediated_decay - - 5 288.0 0.0 6.066 0.0 328.8 2.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000048120 Entpd1 ENSMUST00000160286 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048120 Entpd1 ENSMUST00000155988 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048120 Entpd1 ENSMUST00000134063 ENSMUSP00000116285 TRANSLATION protein_coding - CCDS79708.1 1 539.0 0.0 10.266 0.0 558.3 3.0 -4,-5 0.1973 10 12.0 MINOR ENSMUSG00000071660 Ttc9c ENSMUST00000148090 - NO_TRANSLATION retained_intron ENSMUSG00000071660 Ttc9c ENSMUST00000153281 ENSMUSP00000120656 TRANSLATION protein_coding - - 1 110.0 0.0 0.665 0.1 0.0 0.0 -4,-5 0.0015 2 3.156 MINOR ENSMUSG00000071660 Ttc9c ENSMUST00000088092 ENSMUSP00000085413 TRANSLATION protein_coding - CCDS29549.1 1 171.0 0.0 1.265 11.8 24.2 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000071660 Ttc9c ENSMUST00000096751 ENSMUSP00000094513 TRANSLATION protein_coding - CCDS29549.1 1 171.0 0.0 1.265 11.8 24.2 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000024812 Tjp2 ENSMUST00000233658 ENSMUSP00000156728 TRANSLATION protein_coding - CCDS37939.1 - 1167.0 0.0 10.56 0.1 228.5 0.0 -4,-5 1.0 39 8.0 PRINCIPAL:2 ENSMUSG00000024812 Tjp2 ENSMUST00000099558 ENSMUSP00000097154 TRANSLATION protein_coding - CCDS37939.1 1 1167.0 0.0 10.56 0.1 228.5 0.0 -4,-5 1.0 39 8.0 PRINCIPAL:2 ENSMUSG00000024812 Tjp2 ENSMUST00000233027 ENSMUSP00000156605 TRANSLATION protein_coding - - - 1190.0 0.0 10.56 0.1 228.5 0.0 -4,-7 0.3304 39 8.0 ALTERNATIVE:2 ENSMUSG00000024812 Tjp2 ENSMUST00000236570 ENSMUSP00000157619 TRANSLATION protein_coding stop - - 171.0 0.0 3.0 0.0 60.5 0.0 -4,-2 0.0 4 -2.0 MINOR ENSMUSG00000024812 Tjp2 ENSMUST00000237550 ENSMUSP00000157949 TRANSLATION protein_coding stop - - 53.0 0.0 1.5 0.0 28.7 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000024812 Tjp2 ENSMUST00000237937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024812 Tjp2 ENSMUST00000232956 ENSMUSP00000156896 TRANSLATION protein_coding - - - 1165.0 0.0 10.56 0.1 228.5 0.0 -4,-5 0.5665 39 8.0 ALTERNATIVE:2 ENSMUSG00000024940 Ltbp3 ENSMUST00000236130 ENSMUSP00000158570 TRANSLATION protein_coding start - - 415.0 29.0 5.575 0.0 228.6 0.0 -4,-5 0.0009 3 -2.0 MINOR ENSMUSG00000024940 Ltbp3 ENSMUST00000235336 - NO_TRANSLATION retained_intron ENSMUSG00000024940 Ltbp3 ENSMUST00000235898 - NO_TRANSLATION retained_intron ENSMUSG00000024940 Ltbp3 ENSMUST00000237327 - NO_TRANSLATION retained_intron ENSMUSG00000024940 Ltbp3 ENSMUST00000237128 - NO_TRANSLATION retained_intron ENSMUSG00000024940 Ltbp3 ENSMUST00000237180 - NO_TRANSLATION retained_intron ENSMUSG00000024940 Ltbp3 ENSMUST00000237317 - NO_TRANSLATION retained_intron ENSMUSG00000024940 Ltbp3 ENSMUST00000236617 ENSMUSP00000158261 TRANSLATION protein_coding start/stop - - 118.0 0.0 0.165 0.0 31.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000024940 Ltbp3 ENSMUST00000236258 - NO_TRANSLATION retained_intron ENSMUSG00000024940 Ltbp3 ENSMUST00000237280 - NO_TRANSLATION retained_intron ENSMUSG00000024940 Ltbp3 ENSMUST00000081496 ENSMUSP00000080214 TRANSLATION protein_coding - CCDS37891.1 5 1253.0 59.0 13.775 4.6 555.3 0.0 0,-3 1.0 18 20.0 PRINCIPAL:1 ENSMUSG00000024940 Ltbp3 ENSMUST00000236529 ENSMUSP00000157845 TRANSLATION nonsense_mediated_decay start - - 153.0 14.0 2.1 0.0 112.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000116347 Gm49416 ENSMUST00000191089 ENSMUSP00000140564 TRANSLATION protein_coding,RT - - 5 99.0 0.0 2.0 0.0 0.0 0.0 -4,-6 0.6477 - -2.0 PRINCIPAL:1 ENSMUSG00000116347 Gm49416 ENSMUST00000188635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024815 Trpd52l3 ENSMUST00000025727 ENSMUSP00000025727 TRANSLATION protein_coding - CCDS29741.1 - 231.0 0.0 0.8 2.1 207.0 0.0 -4,-5 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000024955 Esrra ENSMUST00000172975 ENSMUSP00000133916 TRANSLATION protein_coding - - 3 383.0 4.0 5.0 0.0 156.3 0.0 -4,-5 0.0007 4 9.876 MINOR ENSMUSG00000024955 Esrra ENSMUST00000173635 ENSMUSP00000134587 TRANSLATION protein_coding stop - 5 161.0 0.0 2.6 0.0 58.4 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000024955 Esrra ENSMUST00000239322 ENSMUSP00000159237 TRANSLATION protein_coding - - - 499.0 8.0 6.0 0.0 208.4 0.0 -4,-1 0.0643 4 18.0 MINOR ENSMUSG00000024955 Esrra ENSMUST00000145192 - NO_TRANSLATION retained_intron ENSMUSG00000024955 Esrra ENSMUST00000025906 ENSMUSP00000025906 TRANSLATION protein_coding - CCDS29509.1 1 422.0 8.0 6.0 8.9 208.4 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000024955 Esrra ENSMUST00000173308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095189 Or5b117 ENSMUST00000096201 ENSMUSP00000093915 TRANSLATION protein_coding - CCDS29660.1 5 314.0 0.0 1.0 6.4 173.2 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095189 Or5b117 ENSMUST00000077501 ENSMUSP00000076707 TRANSLATION protein_coding - CCDS29660.1 - 314.0 0.0 1.0 6.4 173.2 5.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025078 Nhlrc2 ENSMUST00000236979 ENSMUSP00000158506 TRANSLATION nonsense_mediated_decay start - - 125.0 0.0 1.525 0.0 22.7 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000025078 Nhlrc2 ENSMUST00000071423 ENSMUSP00000071370 TRANSLATION protein_coding - CCDS29918.1 1 725.0 0.0 8.5 9.8 127.7 0.0 -4,-7 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000071497 Nutf2-ps1 ENSMUST00000095978 ENSMUSP00000131850 TRANSLATION protein_coding - - - 127.0 0.0 1.0 33.9 114.4 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000039097 Rln1 ENSMUST00000182039 - NO_TRANSLATION retained_intron ENSMUSG00000039097 Rln1 ENSMUST00000044143 ENSMUSP00000043376 TRANSLATION protein_coding - CCDS29733.1 1 185.0 0.0 0.0 0.1 62.2 0.0 4,-1 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046139 Patl1 ENSMUST00000238190 ENSMUSP00000158282 TRANSLATION nonsense_mediated_decay - - - 214.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0186 2 -2.0 MINOR ENSMUSG00000046139 Patl1 ENSMUST00000061618 ENSMUSP00000060398 TRANSLATION protein_coding - CCDS37924.1 1 770.0 0.0 5.748 14.7 0.0 0.0 -4,-5 1.0 12 10.0 PRINCIPAL:1 ENSMUSG00000024639 Gnaq ENSMUST00000025541 ENSMUSP00000025541 TRANSLATION protein_coding - CCDS29684.1 1 359.0 23.0 7.0 32.3 398.4 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000024639 Gnaq ENSMUST00000170229 - NO_TRANSLATION retained_intron ENSMUSG00000024639 Gnaq ENSMUST00000167656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074909 Ranbp6 ENSMUST00000235906 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000074909 Ranbp6 ENSMUST00000099525 ENSMUSP00000100503 TRANSLATION protein_coding - CCDS37954.1 - 1105.0 0.0 1.0 10.1 52.8 0.0 -4,-5 1.0 17 15.0 PRINCIPAL:1 ENSMUSG00000024811 Tnks2 ENSMUST00000164665 ENSMUSP00000132440 TRANSLATION protein_coding start/stop - 5 327.0 0.0 5.25 0.0 143.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024811 Tnks2 ENSMUST00000168718 ENSMUSP00000133253 TRANSLATION protein_coding start - 2 170.0 0.0 3.8 0.0 53.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024811 Tnks2 ENSMUST00000168973 - NO_TRANSLATION retained_intron ENSMUSG00000024811 Tnks2 ENSMUST00000167724 ENSMUSP00000126888 TRANSLATION protein_coding start/stop - 3 223.0 0.0 5.5 0.0 64.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024811 Tnks2 ENSMUST00000249614 ENSMUSP00000159823 TRANSLATION protein_coding - - - 1180.0 6.0 24.8 0.0 503.7 0.0 -1,1 0.3167 - 14.0 ALTERNATIVE:2 ENSMUSG00000024811 Tnks2 ENSMUST00000168656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024811 Tnks2 ENSMUST00000166677 - NO_TRANSLATION retained_intron ENSMUSG00000024811 Tnks2 ENSMUST00000168654 - NO_TRANSLATION retained_intron ENSMUSG00000024811 Tnks2 ENSMUST00000025729 ENSMUSP00000025729 TRANSLATION protein_coding - CCDS50426.1 5 1166.0 6.0 24.8 3.8 503.7 0.0 -2,-5 1.0 - 15.0 PRINCIPAL:2 ENSMUSG00000024811 Tnks2 ENSMUST00000167533 - NO_TRANSLATION retained_intron ENSMUSG00000024659 Anxa1 ENSMUST00000164587 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024659 Anxa1 ENSMUST00000163902 - NO_TRANSLATION retained_intron ENSMUSG00000024659 Anxa1 ENSMUST00000025561 ENSMUSP00000025561 TRANSLATION protein_coding - CCDS29692.1 1 346.0 18.0 10.0 27.9 308.5 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000024659 Anxa1 ENSMUST00000168020 - NO_TRANSLATION retained_intron ENSMUSG00000024659 Anxa1 ENSMUST00000235280 ENSMUSP00000158305 TRANSLATION protein_coding - CCDS29692.1 - 346.0 18.0 10.0 27.9 308.5 0.0 -4,-5 1.0 25 22.0 PRINCIPAL:1 ENSMUSG00000024659 Anxa1 ENSMUST00000167668 - NO_TRANSLATION retained_intron ENSMUSG00000024659 Anxa1 ENSMUST00000171423 ENSMUSP00000158429 TRANSLATION nonsense_mediated_decay - - 5 302.0 14.0 8.7 0.0 226.7 0.0 -4,-5 0.0018 19 -2.0 MINOR ENSMUSG00000024659 Anxa1 ENSMUST00000165518 - NO_TRANSLATION retained_intron ENSMUSG00000024642 Tle4 ENSMUST00000235975 - NO_TRANSLATION retained_intron ENSMUSG00000024642 Tle4 ENSMUST00000052011 ENSMUSP00000057527 TRANSLATION protein_coding - CCDS50399.1 1 773.0 0.0 9.65 19.8 272.3 0.0 -4,-2 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000060556 Or10v9 ENSMUST00000079875 ENSMUSP00000078800 TRANSLATION protein_coding - CCDS29615.1 - 318.0 0.0 1.0 7.9 179.0 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060556 Or10v9 ENSMUST00000214796 ENSMUSP00000150146 TRANSLATION protein_coding - CCDS29615.1 5 318.0 0.0 1.0 7.9 179.0 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000047658 Gal3st3 ENSMUST00000061169 ENSMUSP00000061517 TRANSLATION protein_coding - CCDS29455.1 1 431.0 0.0 1.0 7.0 670.9 0.0 -4,-6 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000067545 Or10q3 ENSMUST00000087857 ENSMUSP00000085163 TRANSLATION protein_coding - CCDS29616.1 - 343.0 0.0 1.0 0.0 185.7 7.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067545 Or10q3 ENSMUST00000213954 ENSMUSP00000150966 TRANSLATION protein_coding - CCDS29616.1 5 343.0 0.0 1.0 0.0 185.7 7.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067545 Or10q3 ENSMUST00000217617 ENSMUSP00000148848 TRANSLATION protein_coding - CCDS29616.1 5 343.0 0.0 1.0 0.0 185.7 7.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000024712 Rfk ENSMUST00000136162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024712 Rfk ENSMUST00000146171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024712 Rfk ENSMUST00000025617 ENSMUSP00000025617 TRANSLATION protein_coding - CCDS29688.1 1 155.0 30.0 3.75 20.2 132.3 0.0 -4,0 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000025219 Fgf8 ENSMUST00000026240 ENSMUSP00000026240 TRANSLATION protein_coding - CCDS50452.1 1 244.0 9.0 4.094 2.5 143.4 0.0 4,-1 0.6745 - 14.882 MINOR ENSMUSG00000025219 Fgf8 ENSMUST00000111924 ENSMUSP00000107555 TRANSLATION protein_coding - - 5 140.0 8.0 2.33 1.7 113.8 0.0 -4,-5 0.0583 - 8.218 MINOR ENSMUSG00000025219 Fgf8 ENSMUST00000026241 ENSMUSP00000026241 TRANSLATION protein_coding - CCDS29864.1 1 268.0 9.0 3.896 0.4 143.4 0.0 2,-3 0.2261 - 13.604 MINOR ENSMUSG00000025219 Fgf8 ENSMUST00000111925 ENSMUSP00000107556 TRANSLATION protein_coding - - 5 233.0 9.0 3.896 1.3 143.4 0.0 4,-1 0.1984 - 13.78 MINOR ENSMUSG00000025219 Fgf8 ENSMUST00000111927 ENSMUSP00000107558 TRANSLATION protein_coding - CCDS50450.1 1 204.0 9.0 3.896 3.4 143.4 0.0 4,-1 0.7762 - 15.016 ALTERNATIVE:2 ENSMUSG00000025219 Fgf8 ENSMUST00000111928 ENSMUSP00000107559 TRANSLATION protein_coding - CCDS50451.1 1 215.0 9.0 4.094 4.4 143.4 0.0 3,-2 1.0 - 16.0 PRINCIPAL:4 ENSMUSG00000024858 Grk2 ENSMUST00000167511 ENSMUSP00000129839 TRANSLATION protein_coding stop - 3 110.0 0.0 2.25 0.0 29.9 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000024858 Grk2 ENSMUST00000235681 ENSMUSP00000157639 TRANSLATION nonsense_mediated_decay start - - 26.0 0.0 0.33 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000024858 Grk2 ENSMUST00000165954 ENSMUSP00000128177 TRANSLATION protein_coding start/stop - 3 208.0 5.0 6.33 0.0 152.0 0.0 -4,-5 0.0001 2 -2.0 MINOR ENSMUSG00000024858 Grk2 ENSMUST00000164427 - NO_TRANSLATION retained_intron ENSMUSG00000024858 Grk2 ENSMUST00000168594 ENSMUSP00000126025 TRANSLATION protein_coding start/stop - 5 87.0 0.0 2.25 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024858 Grk2 ENSMUST00000169991 - NO_TRANSLATION retained_intron ENSMUSG00000024858 Grk2 ENSMUST00000088737 ENSMUSP00000086114 TRANSLATION protein_coding - CCDS70915.1 1 689.0 17.0 19.24 30.4 342.8 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000024858 Grk2 ENSMUST00000025791 ENSMUSP00000025791 TRANSLATION protein_coding - CCDS29426.1 1 647.0 17.0 18.74 15.3 342.8 0.0 -4,-5 0.7958 10 18.942 MINOR ENSMUSG00000024858 Grk2 ENSMUST00000113837 - NO_TRANSLATION retained_intron ENSMUSG00000054237 Fra10ac1 ENSMUST00000238154 - NO_TRANSLATION retained_intron ENSMUSG00000054237 Fra10ac1 ENSMUST00000238007 - NO_TRANSLATION retained_intron ENSMUSG00000054237 Fra10ac1 ENSMUST00000067167 ENSMUSP00000070534 TRANSLATION protein_coding - CCDS37972.1 1 315.0 0.0 4.5 10.3 176.1 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000024902 Mrpl11 ENSMUST00000236917 ENSMUSP00000157720 TRANSLATION protein_coding - - - 158.0 0.0 4.58 3.6 154.3 0.0 -4,-2 0.1642 5 10.584 MINOR ENSMUSG00000024902 Mrpl11 ENSMUST00000236354 - NO_TRANSLATION retained_intron ENSMUSG00000024902 Mrpl11 ENSMUST00000025836 ENSMUSP00000025836 TRANSLATION protein_coding - CCDS29444.1 1 192.0 0.0 5.66 11.5 154.3 0.0 -4,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000024902 Mrpl11 ENSMUST00000235229 ENSMUSP00000157440 TRANSLATION protein_coding stop - - 114.0 0.0 3.25 0.0 94.7 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000024902 Mrpl11 ENSMUST00000237974 ENSMUSP00000157652 TRANSLATION protein_coding stop - - 150.0 0.0 4.41 0.0 140.6 0.0 -4,-2 0.0014 5 -2.0 MINOR ENSMUSG00000035885 Cox8a ENSMUST00000039758 ENSMUSP00000040717 TRANSLATION protein_coding - CCDS29521.1 1 69.0 0.0 1.5 10.0 86.2 0.0 -4,0 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000035885 Cox8a ENSMUST00000237087 ENSMUSP00000157524 TRANSLATION nonsense_mediated_decay - - - 43.0 0.0 0.5 0.0 0.0 0.0 -3,1 0.0 - -2.0 MINOR ENSMUSG00000050623 Catsperz ENSMUST00000057716 ENSMUSP00000056681 TRANSLATION protein_coding - CCDS29510.1 1 194.0 0.0 1.665 0.3 0.0 0.0 -4,-2 1.0 1 6.0 PRINCIPAL:2 ENSMUSG00000050623 Catsperz ENSMUST00000237380 ENSMUSP00000158477 TRANSLATION protein_coding - - - 159.0 0.0 1.665 0.0 0.0 0.0 -4,-5 0.0767 1 6.0 ALTERNATIVE:2 ENSMUSG00000050623 Catsperz ENSMUST00000235924 - NO_TRANSLATION retained_intron ENSMUSG00000050623 Catsperz ENSMUST00000236318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050623 Catsperz ENSMUST00000237586 ENSMUSP00000158037 TRANSLATION protein_coding start - - 61.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0082 - -2.0 MINOR ENSMUSG00000050623 Catsperz ENSMUST00000237743 ENSMUSP00000158423 TRANSLATION protein_coding start - - 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0173 - -2.0 MINOR ENSMUSG00000050623 Catsperz ENSMUST00000236981 - NO_TRANSLATION retained_intron ENSMUSG00000050623 Catsperz ENSMUST00000237563 - NO_TRANSLATION retained_intron ENSMUSG00000050623 Catsperz ENSMUST00000237709 - NO_TRANSLATION retained_intron ENSMUSG00000034445 Cyb561a3 ENSMUST00000237814 ENSMUSP00000158186 TRANSLATION protein_coding - CCDS29582.1 - 242.0 0.0 4.995 11.8 151.3 9.0 -1,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034445 Cyb561a3 ENSMUST00000235271 ENSMUSP00000157672 TRANSLATION protein_coding - CCDS29582.1 - 242.0 0.0 4.995 11.8 151.3 9.0 -1,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034445 Cyb561a3 ENSMUST00000236743 ENSMUSP00000157545 TRANSLATION protein_coding stop - - 15.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000034445 Cyb561a3 ENSMUST00000237641 ENSMUSP00000157602 TRANSLATION protein_coding - - - 257.0 0.0 4.83 0.1 151.3 9.0 -1,-5 0.1049 - 11.67 MINOR ENSMUSG00000034445 Cyb561a3 ENSMUST00000236747 ENSMUSP00000158021 TRANSLATION nonsense_mediated_decay - - - 106.0 0.0 1.5 0.0 0.0 4.0 -1,-5 0.0038 - -2.0 MINOR ENSMUSG00000034445 Cyb561a3 ENSMUST00000237581 ENSMUSP00000157884 TRANSLATION protein_coding - CCDS29582.1 - 242.0 0.0 4.995 11.8 151.3 9.0 -1,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034445 Cyb561a3 ENSMUST00000236352 ENSMUSP00000157892 TRANSLATION protein_coding - - - 263.0 0.0 4.83 0.0 151.3 9.0 -1,-5 0.0728 - 11.67 MINOR ENSMUSG00000034445 Cyb561a3 ENSMUST00000237564 ENSMUSP00000157662 TRANSLATION protein_coding stop - - 61.0 0.0 1.5 0.0 0.0 3.0 0,-4 0.0036 - -2.0 MINOR ENSMUSG00000034445 Cyb561a3 ENSMUST00000168445 ENSMUSP00000130680 TRANSLATION protein_coding - CCDS29582.1 5 242.0 0.0 4.995 11.8 151.3 9.0 -1,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025228 Actr1a ENSMUST00000235752 ENSMUSP00000157773 TRANSLATION nonsense_mediated_decay - - - 52.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025228 Actr1a ENSMUST00000237952 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025228 Actr1a ENSMUST00000236814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025228 Actr1a ENSMUST00000040270 ENSMUSP00000039844 TRANSLATION protein_coding - CCDS29878.1 1 376.0 35.0 9.33 36.9 442.2 0.0 -4,-5 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000025228 Actr1a ENSMUST00000236117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025228 Actr1a ENSMUST00000237477 ENSMUSP00000158084 TRANSLATION nonsense_mediated_decay - - - 42.0 7.0 1.25 0.0 36.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025228 Actr1a ENSMUST00000237742 ENSMUSP00000158413 TRANSLATION protein_coding - - - 332.0 31.0 7.0 0.4 330.9 0.0 -4,-5 0.0031 6 4.674 MINOR ENSMUSG00000025004 Cyp2c40 ENSMUST00000239028 ENSMUSP00000158887 TRANSLATION protein_coding - CCDS29798.2 - 520.0 33.0 10.3 0.0 503.9 0.0 -4,-5 0.1387 - 18.0 MINOR ENSMUSG00000025004 Cyp2c40 ENSMUST00000162507 ENSMUSP00000124618 TRANSLATION protein_coding stop - 5 120.0 6.0 2.55 0.0 42.6 0.0 2,-3 0.0021 - -2.0 MINOR ENSMUSG00000025004 Cyp2c40 ENSMUST00000162630 ENSMUSP00000123884 TRANSLATION nonsense_mediated_decay - - 5 165.0 6.0 3.8 0.0 108.2 0.0 2,-3 0.0014 - -2.0 MINOR ENSMUSG00000025004 Cyp2c40 ENSMUST00000160476 ENSMUSP00000125217 TRANSLATION protein_coding - - 1 491.0 33.0 10.3 6.6 503.9 0.0 2,-3 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000025004 Cyp2c40 ENSMUST00000163090 - NO_TRANSLATION retained_intron ENSMUSG00000025004 Cyp2c40 ENSMUST00000162434 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057503 Or5b106 ENSMUST00000215405 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057503 Or5b106 ENSMUST00000213493 ENSMUSP00000150886 TRANSLATION protein_coding - CCDS29651.1 5 307.0 0.0 1.0 8.0 168.2 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000057503 Or5b106 ENSMUST00000078299 ENSMUSP00000077414 TRANSLATION protein_coding - CCDS29651.1 - 307.0 0.0 1.0 8.0 168.2 5.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000038274 Fau ENSMUST00000179142 ENSMUSP00000136358 TRANSLATION protein_coding - CCDS29489.1 1 133.0 0.0 3.58 32.9 163.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038274 Fau ENSMUST00000043074 ENSMUSP00000042835 TRANSLATION protein_coding - CCDS29489.1 1 133.0 0.0 3.58 32.9 163.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038274 Fau ENSMUST00000237840 ENSMUSP00000157878 TRANSLATION protein_coding - CCDS29489.1 - 133.0 0.0 3.58 32.9 163.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038274 Fau ENSMUST00000178310 ENSMUSP00000136803 TRANSLATION protein_coding - CCDS29489.1 1 133.0 0.0 3.58 32.9 163.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038274 Fau ENSMUST00000236336 ENSMUSP00000158381 TRANSLATION protein_coding - - - 98.0 0.0 2.58 0.0 109.1 0.0 -4,-5 0.0 2 6.726 MINOR ENSMUSG00000038274 Fau ENSMUST00000236217 ENSMUSP00000157416 TRANSLATION protein_coding - CCDS29489.1 - 133.0 0.0 3.58 32.9 163.7 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000038274 Fau ENSMUST00000237859 ENSMUSP00000157825 TRANSLATION protein_coding - - - 63.0 0.0 1.5 0.0 109.1 0.0 -4,-7 0.0 1 4.566 MINOR ENSMUSG00000038274 Fau ENSMUST00000236976 - NO_TRANSLATION retained_intron ENSMUSG00000038274 Fau ENSMUST00000236021 - NO_TRANSLATION retained_intron ENSMUSG00000024747 Aldh1a7 ENSMUST00000025656 ENSMUSP00000025656 TRANSLATION protein_coding - CCDS29696.1 1 501.0 27.0 12.0 10.1 610.6 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000025200 Cwf19l1 ENSMUST00000235288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025200 Cwf19l1 ENSMUST00000237939 ENSMUSP00000157760 TRANSLATION nonsense_mediated_decay stop - - 296.0 2.0 2.0965 0.0 0.0 0.0 -4,-6 0.0 9 -2.0 MINOR ENSMUSG00000025200 Cwf19l1 ENSMUST00000237067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025200 Cwf19l1 ENSMUST00000236626 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025200 Cwf19l1 ENSMUST00000026218 ENSMUSP00000026218 TRANSLATION protein_coding - CCDS37995.1 1 537.0 6.0 4.0065 18.9 177.9 0.0 -4,-6 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000025200 Cwf19l1 ENSMUST00000237250 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025200 Cwf19l1 ENSMUST00000236156 ENSMUSP00000158054 TRANSLATION nonsense_mediated_decay - - - 113.0 2.0 0.465 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025200 Cwf19l1 ENSMUST00000237415 ENSMUSP00000158411 TRANSLATION nonsense_mediated_decay - - - 113.0 2.0 0.465 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024953 Prdx5 ENSMUST00000238095 ENSMUSP00000158249 TRANSLATION protein_coding start - - 142.0 0.0 2.75 0.0 53.5 0.0 -4,-6 0.0069 8 -2.0 MINOR ENSMUSG00000024953 Prdx5 ENSMUST00000025904 ENSMUSP00000025904 TRANSLATION protein_coding - CCDS29507.1 1 210.0 0.0 4.15 0.1 54.5 0.0 -4,0 1.0 12 8.0 PRINCIPAL:2 ENSMUSG00000024953 Prdx5 ENSMUST00000149261 ENSMUSP00000135084 TRANSLATION protein_coding - - 2 213.0 0.0 4.0 0.0 54.5 0.0 -4,-6 0.1034 12 7.7 ALTERNATIVE:2 ENSMUSG00000024953 Prdx5 ENSMUST00000173091 ENSMUSP00000134521 TRANSLATION protein_coding - - 5 166.0 0.0 3.15 0.0 23.0 0.0 -4,0 0.0 11 4.002 MINOR ENSMUSG00000024953 Prdx5 ENSMUST00000145300 - NO_TRANSLATION retained_intron ENSMUSG00000079419 Ms4a6c ENSMUST00000187462 - NO_TRANSLATION retained_intron ENSMUSG00000079419 Ms4a6c ENSMUST00000165310 ENSMUSP00000132425 TRANSLATION protein_coding - CCDS50395.1 1 217.0 0.0 3.1 0.0 149.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000046230 Vps13a ENSMUST00000225764 - NO_TRANSLATION retained_intron ENSMUSG00000046230 Vps13a ENSMUST00000223897 - NO_TRANSLATION retained_intron ENSMUSG00000046230 Vps13a ENSMUST00000225079 - NO_TRANSLATION retained_intron ENSMUSG00000046230 Vps13a ENSMUST00000068156 ENSMUSP00000068716 TRANSLATION protein_coding - CCDS37929.1 2 3166.0 0.0 3.31 5.4 975.5 0.0 -4,-6 1.0 56 14.0 PRINCIPAL:1 ENSMUSG00000046230 Vps13a ENSMUST00000225349 - NO_TRANSLATION retained_intron ENSMUSG00000046230 Vps13a ENSMUST00000224428 - NO_TRANSLATION retained_intron ENSMUSG00000046230 Vps13a ENSMUST00000223846 - NO_TRANSLATION retained_intron ENSMUSG00000046230 Vps13a ENSMUST00000225233 ENSMUSP00000152909 TRANSLATION protein_coding start - - 857.0 0.0 0.0 0.0 385.3 0.0 -4,-7 0.0068 17 -2.0 MINOR ENSMUSG00000046230 Vps13a ENSMUST00000224725 - NO_TRANSLATION retained_intron ENSMUSG00000046230 Vps13a ENSMUST00000223667 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046230 Vps13a ENSMUST00000225899 ENSMUSP00000157588 TRANSLATION protein_coding start - - 148.0 0.0 0.0 0.0 57.8 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000046230 Vps13a ENSMUST00000224149 ENSMUSP00000153129 TRANSLATION nonsense_mediated_decay - - - 2339.0 0.0 3.31 0.0 674.8 0.0 -4,-6 0.1485 39 -2.0 MINOR ENSMUSG00000024913 Lrp5 ENSMUST00000176867 ENSMUSP00000135654 TRANSLATION protein_coding - - 1 618.0 0.0 7.66 0.0 338.5 0.0 0,-2 0.0028 2 0.0 MINOR ENSMUSG00000024913 Lrp5 ENSMUST00000025856 ENSMUSP00000025856 TRANSLATION protein_coding - CCDS37881.1 1 1614.0 14.0 18.97 0.3 729.7 0.0 0,-2 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000024913 Lrp5 ENSMUST00000177330 ENSMUSP00000134983 TRANSLATION nonsense_mediated_decay - - 2 279.0 0.0 2.36 0.0 111.8 0.0 0,-2 0.0012 - -2.0 MINOR ENSMUSG00000024913 Lrp5 ENSMUST00000177294 ENSMUSP00000134771 TRANSLATION nonsense_mediated_decay start - 1 226.0 0.0 3.0 0.0 150.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025188 Hps1 ENSMUST00000069298 ENSMUSP00000071069 TRANSLATION protein_coding - - 1 635.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0494 5 0.0 MINOR ENSMUSG00000025188 Hps1 ENSMUST00000162061 ENSMUSP00000124209 TRANSLATION protein_coding - - 1 627.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0498 5 0.0 MINOR ENSMUSG00000025188 Hps1 ENSMUST00000161252 ENSMUSP00000125483 TRANSLATION nonsense_mediated_decay start - 1 24.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0193 - -2.0 MINOR ENSMUSG00000025188 Hps1 ENSMUST00000162004 ENSMUSP00000125226 TRANSLATION protein_coding - CCDS37992.1 1 704.0 0.0 0.0 9.6 0.0 0.0 -4,-7 1.0 6 3.0 PRINCIPAL:1 ENSMUSG00000025188 Hps1 ENSMUST00000160455 ENSMUSP00000125662 TRANSLATION protein_coding - CCDS84439.1 1 712.0 0.0 0.0 0.1 0.0 0.0 -4,-7 0.291 6 0.0 MINOR ENSMUSG00000025188 Hps1 ENSMUST00000161761 - NO_TRANSLATION retained_intron ENSMUSG00000025188 Hps1 ENSMUST00000026194 ENSMUSP00000026194 TRANSLATION protein_coding - CCDS37992.1 5 704.0 0.0 0.0 9.6 0.0 0.0 -4,-7 1.0 6 3.0 PRINCIPAL:1 ENSMUSG00000025188 Hps1 ENSMUST00000160621 - NO_TRANSLATION retained_intron ENSMUSG00000025188 Hps1 ENSMUST00000159974 - NO_TRANSLATION retained_intron ENSMUSG00000024942 Capn1 ENSMUST00000235138 ENSMUSP00000157973 TRANSLATION protein_coding stop - - 79.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024942 Capn1 ENSMUST00000237519 ENSMUSP00000158205 TRANSLATION protein_coding stop - - 196.0 5.0 4.33 0.0 210.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000024942 Capn1 ENSMUST00000164843 ENSMUSP00000127498 TRANSLATION protein_coding - CCDS37893.1 5 713.0 29.0 16.21 18.2 647.7 0.0 -4,-5 1.0 35 22.0 PRINCIPAL:1 ENSMUSG00000024942 Capn1 ENSMUST00000025891 ENSMUSP00000025891 TRANSLATION protein_coding - CCDS37893.1 1 713.0 29.0 16.21 18.2 647.7 0.0 -4,-5 1.0 35 22.0 PRINCIPAL:1 ENSMUSG00000024942 Capn1 ENSMUST00000236537 ENSMUSP00000158309 TRANSLATION protein_coding stop - - 79.0 3.0 2.25 0.0 129.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000051984 Sec31b ENSMUST00000111985 ENSMUSP00000107616 TRANSLATION protein_coding - - 1 1001.0 0.0 1.015 0.0 0.0 0.0 -4,-5 0.1311 8 2.556 MINOR ENSMUSG00000051984 Sec31b ENSMUST00000165758 ENSMUSP00000130598 TRANSLATION nonsense_mediated_decay start - 5 59.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0361 1 -2.0 MINOR ENSMUSG00000051984 Sec31b ENSMUST00000063632 ENSMUSP00000064900 TRANSLATION protein_coding - CCDS37997.1 5 1158.0 0.0 2.3825 0.0 0.0 0.0 -4,-5 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000006457 Actn3 ENSMUST00000138811 - NO_TRANSLATION retained_intron ENSMUSG00000006457 Actn3 ENSMUST00000006626 ENSMUSP00000006626 TRANSLATION protein_coding - CCDS29441.1 1 900.0 4.0 19.3 10.7 518.6 0.0 -4,-5 1.0 45 19.0 PRINCIPAL:1 ENSMUSG00000006463 Zdhhc24 ENSMUST00000162134 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006463 Zdhhc24 ENSMUST00000006632 ENSMUSP00000006632 TRANSLATION protein_coding - CCDS50353.1 1 284.0 6.0 2.32 10.1 91.7 5.0 -2,-4 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000006463 Zdhhc24 ENSMUST00000160014 ENSMUSP00000123709 TRANSLATION nonsense_mediated_decay - - 3 93.0 0.0 0.32 0.0 0.0 4.0 -2,-4 0.0038 - -2.0 MINOR ENSMUSG00000006463 Zdhhc24 ENSMUST00000162754 - NO_TRANSLATION retained_intron ENSMUSG00000006463 Zdhhc24 ENSMUST00000162088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006463 Zdhhc24 ENSMUST00000162720 ENSMUSP00000124337 TRANSLATION nonsense_mediated_decay - - 1 105.0 0.0 0.32 0.0 0.0 4.0 -2,-4 0.0038 - -2.0 MINOR ENSMUSG00000024810 Il33 ENSMUST00000120388 ENSMUSP00000113829 TRANSLATION protein_coding - CCDS29740.1 1 266.0 0.0 4.448 0.1 419.1 0.0 -4,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000024810 Il33 ENSMUST00000025724 ENSMUSP00000025724 TRANSLATION protein_coding - CCDS29740.1 1 266.0 0.0 4.448 0.1 419.1 0.0 -4,-2 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000024810 Il33 ENSMUST00000144528 ENSMUSP00000122319 TRANSLATION protein_coding stop - 3 66.0 0.0 0.0 0.0 102.3 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000024810 Il33 ENSMUST00000177518 ENSMUSP00000135854 TRANSLATION protein_coding stop - 3 228.0 0.0 3.198 0.0 328.2 0.0 -4,-2 0.0056 5 -2.0 MINOR ENSMUSG00000024810 Il33 ENSMUST00000136850 ENSMUSP00000135324 TRANSLATION protein_coding stop - 2 83.0 0.0 0.0 0.0 83.2 0.0 -3,-5 0.0 1 -2.0 MINOR ENSMUSG00000024766 Lipo3 ENSMUST00000145807 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024766 Lipo3 ENSMUST00000235583 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024766 Lipo3 ENSMUST00000112508 ENSMUSP00000108127 TRANSLATION protein_coding - CCDS37961.1 1 399.0 7.0 7.9 1.1 74.9 0.0 0,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000024766 Lipo3 ENSMUST00000025694 ENSMUSP00000025694 TRANSLATION protein_coding - CCDS37961.1 1 399.0 7.0 7.9 1.1 74.9 0.0 0,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000087303 Lipo2 ENSMUST00000147153 ENSMUSP00000118907 TRANSLATION protein_coding - CCDS84434.1 5 398.0 7.0 7.9 1.1 73.4 0.0 1,-3 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000087303 Lipo2 ENSMUST00000238164 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087303 Lipo2 ENSMUST00000236408 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087303 Lipo2 ENSMUST00000235430 - NO_TRANSLATION retained_intron ENSMUSG00000057506 Bloc1s2 ENSMUST00000237613 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057506 Bloc1s2 ENSMUST00000237630 ENSMUSP00000158032 TRANSLATION protein_coding - - - 104.0 0.0 2.33 1.0 105.1 0.0 -4,-5 0.0128 - 8.982 MINOR ENSMUSG00000057506 Bloc1s2 ENSMUST00000237867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057506 Bloc1s2 ENSMUST00000236380 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057506 Bloc1s2 ENSMUST00000079033 ENSMUSP00000078042 TRANSLATION protein_coding - CCDS50445.1 1 143.0 0.0 3.33 8.6 122.1 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024824 Rad9a ENSMUST00000237467 - NO_TRANSLATION retained_intron ENSMUSG00000024824 Rad9a ENSMUST00000235742 - NO_TRANSLATION retained_intron ENSMUSG00000024824 Rad9a ENSMUST00000025740 ENSMUSP00000025740 TRANSLATION protein_coding - CCDS29422.1 1 389.0 0.0 8.08 6.4 326.0 0.0 -4,-6 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000024824 Rad9a ENSMUST00000237923 ENSMUSP00000158283 TRANSLATION protein_coding stop - - 144.0 0.0 4.25 0.0 117.2 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024824 Rad9a ENSMUST00000237963 - NO_TRANSLATION retained_intron ENSMUSG00000024824 Rad9a ENSMUST00000235367 - NO_TRANSLATION retained_intron ENSMUSG00000024824 Rad9a ENSMUST00000237278 ENSMUSP00000158136 TRANSLATION nonsense_mediated_decay - - - 73.0 0.0 1.25 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000024824 Rad9a ENSMUST00000237723 ENSMUSP00000157774 TRANSLATION protein_coding stop - - 80.0 0.0 2.5 0.0 91.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024797 Vps51 ENSMUST00000159475 ENSMUSP00000124244 TRANSLATION protein_coding start/stop - 3 120.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 2 -2.0 MINOR ENSMUSG00000024797 Vps51 ENSMUST00000161634 - NO_TRANSLATION retained_intron ENSMUSG00000024797 Vps51 ENSMUST00000160590 ENSMUSP00000123857 TRANSLATION protein_coding - - 1 140.0 0.0 0.0 0.0 56.7 0.0 -4,-5 0.0 1 4.074 MINOR ENSMUSG00000024797 Vps51 ENSMUST00000159869 - NO_TRANSLATION retained_intron ENSMUSG00000024797 Vps51 ENSMUST00000160324 - NO_TRANSLATION retained_intron ENSMUSG00000024797 Vps51 ENSMUST00000161222 - NO_TRANSLATION retained_intron ENSMUSG00000024797 Vps51 ENSMUST00000160233 ENSMUSP00000124842 TRANSLATION nonsense_mediated_decay - - 5 81.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024797 Vps51 ENSMUST00000025711 ENSMUSP00000025711 TRANSLATION protein_coding - CCDS37894.1 1 782.0 0.0 0.0 1.7 83.5 0.0 -4,-5 1.0 19 7.0 PRINCIPAL:1 ENSMUSG00000024797 Vps51 ENSMUST00000236983 - NO_TRANSLATION retained_intron ENSMUSG00000024797 Vps51 ENSMUST00000160519 - NO_TRANSLATION retained_intron ENSMUSG00000024797 Vps51 ENSMUST00000159211 - NO_TRANSLATION retained_intron ENSMUSG00000060303 Or5b97 ENSMUST00000216989 ENSMUSP00000149392 TRANSLATION protein_coding - CCDS29643.1 5 309.0 0.0 2.0 2.5 168.8 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060303 Or5b97 ENSMUST00000071484 ENSMUSP00000071419 TRANSLATION protein_coding - CCDS29643.1 - 309.0 0.0 2.0 2.5 168.8 6.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000060303 Or5b97 ENSMUST00000208343 ENSMUSP00000147020 TRANSLATION protein_coding stop - 3 109.0 0.0 1.0 0.0 55.3 1.0 -4,-6 0.0017 - -2.0 MINOR ENSMUSG00000067528 Or4d10b ENSMUST00000207681 ENSMUSP00000146552 TRANSLATION protein_coding - CCDS29619.1 5 313.0 0.0 1.0 8.2 160.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067528 Or4d10b ENSMUST00000087830 ENSMUSP00000085132 TRANSLATION protein_coding - CCDS29619.1 - 313.0 0.0 1.0 8.2 160.1 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025208 Mrpl43 ENSMUST00000235259 - NO_TRANSLATION retained_intron ENSMUSG00000025208 Mrpl43 ENSMUST00000097715 ENSMUSP00000095322 TRANSLATION protein_coding - CCDS38000.1 1 159.0 0.0 3.0 9.1 41.3 0.0 -4,0 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000024976 Shoc2 ENSMUST00000237908 ENSMUSP00000158077 TRANSLATION protein_coding start - - 372.0 0.0 7.33 0.0 87.4 0.0 -4,-7 0.0 3 -2.0 MINOR ENSMUSG00000024976 Shoc2 ENSMUST00000235945 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024976 Shoc2 ENSMUST00000236144 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024976 Shoc2 ENSMUST00000237801 ENSMUSP00000157994 TRANSLATION nonsense_mediated_decay start - - 30.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024976 Shoc2 ENSMUST00000237296 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024976 Shoc2 ENSMUST00000169861 ENSMUSP00000127932 TRANSLATION protein_coding - CCDS29904.1 1 582.0 0.0 9.63 33.9 151.2 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000024976 Shoc2 ENSMUST00000025932 ENSMUSP00000025932 TRANSLATION protein_coding - CCDS29904.1 1 582.0 0.0 9.63 33.9 151.2 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000024687 Osbp ENSMUST00000025590 ENSMUSP00000025590 TRANSLATION protein_coding - CCDS37925.1 5 805.0 0.0 7.035 4.3 546.5 0.0 -4,-5 1.0 21 14.0 PRINCIPAL:1 ENSMUSG00000045052 Prlhr ENSMUST00000051277 ENSMUSP00000063114 TRANSLATION protein_coding - CCDS29940.1 - 370.0 0.0 1.0 9.9 177.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024773 Atg2a ENSMUST00000045351 ENSMUSP00000046412 TRANSLATION protein_coding - CCDS29500.1 1 1914.0 0.0 0.4 0.4 160.3 0.0 -4,-2 1.0 25 12.0 PRINCIPAL:1 ENSMUSG00000024773 Atg2a ENSMUST00000135018 - NO_TRANSLATION retained_intron ENSMUSG00000024773 Atg2a ENSMUST00000237387 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024773 Atg2a ENSMUST00000151079 - NO_TRANSLATION retained_intron ENSMUSG00000024773 Atg2a ENSMUST00000143053 - NO_TRANSLATION retained_intron ENSMUSG00000024773 Atg2a ENSMUST00000145600 ENSMUSP00000114998 TRANSLATION protein_coding start - 1 1718.0 0.0 0.4 0.0 99.5 0.0 -4,-5 0.1053 24 -2.0 MINOR ENSMUSG00000024979 Tectb ENSMUST00000025936 ENSMUSP00000025936 TRANSLATION protein_coding - CCDS29907.1 1 329.0 0.0 1.46 15.8 117.8 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024979 Tectb ENSMUST00000123763 - NO_TRANSLATION retained_intron ENSMUSG00000024979 Tectb ENSMUST00000148123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024979 Tectb ENSMUST00000120936 ENSMUSP00000113805 TRANSLATION protein_coding - - 5 339.0 0.0 1.46 1.1 117.4 0.0 4,-1 0.2055 - 12.004 MINOR ENSMUSG00000024979 Tectb ENSMUST00000124545 ENSMUSP00000117645 TRANSLATION protein_coding start/stop - 3 177.0 0.0 1.0 0.0 85.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024979 Tectb ENSMUST00000154886 ENSMUSP00000121767 TRANSLATION protein_coding stop - 3 195.0 0.0 0.46 0.0 31.6 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000071646 Mta2 ENSMUST00000135300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071646 Mta2 ENSMUST00000132463 - NO_TRANSLATION retained_intron ENSMUSG00000071646 Mta2 ENSMUST00000151386 - NO_TRANSLATION retained_intron ENSMUSG00000071646 Mta2 ENSMUST00000096240 ENSMUSP00000093959 TRANSLATION protein_coding - CCDS29561.1 1 668.0 7.0 5.432 19.5 198.4 0.0 -4,-5 1.0 16 22.0 PRINCIPAL:1 ENSMUSG00000071646 Mta2 ENSMUST00000169535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071646 Mta2 ENSMUST00000137956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025195 Dnmbp ENSMUST00000212592 ENSMUSP00000148421 TRANSLATION protein_coding - CCDS84442.1 1 823.0 0.0 6.128 4.9 323.3 0.0 -3,-6 0.8156 11 6.47 MINOR ENSMUSG00000025195 Dnmbp ENSMUST00000212396 ENSMUSP00000148582 TRANSLATION protein_coding - CCDS29839.1 5 1580.0 0.0 6.827 0.0 456.2 0.0 -4,-7 1.0 17 7.868 PRINCIPAL:2 ENSMUSG00000025195 Dnmbp ENSMUST00000026209 ENSMUSP00000026209 TRANSLATION protein_coding - CCDS29839.1 2 1580.0 0.0 6.827 0.0 456.2 0.0 -4,-7 1.0 17 7.868 PRINCIPAL:2 ENSMUSG00000025195 Dnmbp ENSMUST00000212032 ENSMUSP00000148708 TRANSLATION protein_coding - - 5 1576.0 0.0 6.893 0.1 457.6 0.0 -4,-7 0.5907 17 7.6 ALTERNATIVE:2 ENSMUSG00000025195 Dnmbp ENSMUST00000212048 ENSMUSP00000148546 TRANSLATION protein_coding - - 5 1264.0 0.0 6.128 0.0 323.3 0.0 -4,-1 0.0195 12 4.47 MINOR ENSMUSG00000025195 Dnmbp ENSMUST00000212157 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071648 Rom1 ENSMUST00000096242 ENSMUSP00000093961 TRANSLATION protein_coding - CCDS29559.1 1 351.0 0.0 3.0 10.6 62.9 0.0 -1,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000050957 Insl6 ENSMUST00000052380 ENSMUSP00000054488 TRANSLATION protein_coding - CCDS29732.1 1 191.0 0.0 0.0 0.0 43.2 0.0 1,-3 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000035783 Acta2 ENSMUST00000039631 ENSMUSP00000048218 TRANSLATION protein_coding - CCDS29757.1 1 377.0 35.0 8.08 36.9 497.3 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000035783 Acta2 ENSMUST00000238147 ENSMUSP00000157800 TRANSLATION protein_coding stop - - 214.0 18.0 5.08 0.0 260.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000024851 Pitpnm1 ENSMUST00000127056 ENSMUSP00000157582 TRANSLATION nonsense_mediated_decay start - 3 143.0 7.0 0.0 0.0 0.0 0.0 -4,-2 0.0008 4 -2.0 MINOR ENSMUSG00000024851 Pitpnm1 ENSMUST00000125596 - NO_TRANSLATION retained_intron ENSMUSG00000024851 Pitpnm1 ENSMUST00000100022 ENSMUSP00000097599 TRANSLATION protein_coding - CCDS37883.1 1 1243.0 7.0 4.55 8.9 522.7 0.0 -4,-5 1.0 32 21.0 PRINCIPAL:1 ENSMUSG00000024851 Pitpnm1 ENSMUST00000151957 - NO_TRANSLATION retained_intron ENSMUSG00000024851 Pitpnm1 ENSMUST00000131265 ENSMUSP00000120563 TRANSLATION protein_coding stop - 5 252.0 0.0 4.55 0.0 374.6 0.0 -4,-5 0.0338 7 -2.0 MINOR ENSMUSG00000024851 Pitpnm1 ENSMUST00000139427 - NO_TRANSLATION retained_intron ENSMUSG00000024851 Pitpnm1 ENSMUST00000237026 - NO_TRANSLATION retained_intron ENSMUSG00000024851 Pitpnm1 ENSMUST00000126620 - NO_TRANSLATION retained_intron ENSMUSG00000024851 Pitpnm1 ENSMUST00000049658 ENSMUSP00000054309 TRANSLATION protein_coding - CCDS37883.1 1 1243.0 7.0 4.55 8.9 522.7 0.0 -4,-5 1.0 32 21.0 PRINCIPAL:1 ENSMUSG00000024851 Pitpnm1 ENSMUST00000145915 - NO_TRANSLATION retained_intron ENSMUSG00000024851 Pitpnm1 ENSMUST00000128798 - NO_TRANSLATION retained_intron ENSMUSG00000024851 Pitpnm1 ENSMUST00000145214 ENSMUSP00000158424 TRANSLATION nonsense_mediated_decay start - 5 85.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000024851 Pitpnm1 ENSMUST00000236992 - NO_TRANSLATION retained_intron ENSMUSG00000025010 Ccnj ENSMUST00000119316 ENSMUSP00000112643 TRANSLATION protein_coding - CCDS29806.1 5 379.0 0.0 3.75 20.2 136.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025010 Ccnj ENSMUST00000025983 ENSMUSP00000025983 TRANSLATION protein_coding - CCDS29806.1 1 379.0 0.0 3.75 20.2 136.9 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024856 Cdk2ap2 ENSMUST00000174149 ENSMUSP00000134613 TRANSLATION protein_coding - - 2 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - 0.0 MINOR ENSMUSG00000024856 Cdk2ap2 ENSMUST00000025779 ENSMUSP00000025779 TRANSLATION protein_coding - CCDS29414.1 1 127.0 0.0 1.75 16.0 75.9 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000024856 Cdk2ap2 ENSMUST00000174514 ENSMUSP00000134093 TRANSLATION protein_coding - - 2 107.0 0.0 1.0 1.0 39.9 0.0 -4,-6 0.0082 - 6.582 MINOR ENSMUSG00000024856 Cdk2ap2 ENSMUST00000174799 ENSMUSP00000133593 TRANSLATION nonsense_mediated_decay - - 2 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000024856 Cdk2ap2 ENSMUST00000172914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036098 Myrf ENSMUST00000088013 ENSMUSP00000085329 TRANSLATION protein_coding - - 5 1138.0 0.0 4.75 0.0 366.7 1.0 -4,-5 0.2575 2 8.0 ALTERNATIVE:2 ENSMUSG00000036098 Myrf ENSMUST00000186854 ENSMUSP00000140838 TRANSLATION protein_coding start - 5 477.0 0.0 0.0 0.0 219.7 1.0 -4,-5 0.0026 2 -2.0 MINOR ENSMUSG00000036098 Myrf ENSMUST00000189897 ENSMUSP00000139601 TRANSLATION protein_coding - CCDS50387.1 5 1112.0 0.0 4.75 2.2 366.7 1.0 -4,-5 1.0 2 9.0 PRINCIPAL:2 ENSMUSG00000036098 Myrf ENSMUST00000189439 - NO_TRANSLATION retained_intron ENSMUSG00000036098 Myrf ENSMUST00000186056 ENSMUSP00000140871 TRANSLATION protein_coding - - 1 937.0 0.0 4.75 0.0 366.7 1.0 -4,-5 0.1116 2 8.0 ALTERNATIVE:2 ENSMUSG00000036098 Myrf ENSMUST00000190922 - NO_TRANSLATION retained_intron ENSMUSG00000048292 Or10v5 ENSMUST00000213141 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000048292 Or10v5 ENSMUST00000214887 ENSMUSP00000149141 TRANSLATION protein_coding - CCDS29614.1 5 315.0 0.0 1.0 6.1 179.3 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000048292 Or10v5 ENSMUST00000061235 ENSMUSP00000062542 TRANSLATION protein_coding - CCDS29614.1 - 315.0 0.0 1.0 6.1 179.3 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000024960 Plcb3 ENSMUST00000235352 ENSMUSP00000157584 TRANSLATION protein_coding stop - - 508.0 10.0 10.2 0.0 229.0 0.0 -4,-5 0.0 16 -2.0 MINOR ENSMUSG00000024960 Plcb3 ENSMUST00000235832 - NO_TRANSLATION retained_intron ENSMUSG00000024960 Plcb3 ENSMUST00000236597 - NO_TRANSLATION retained_intron ENSMUSG00000024960 Plcb3 ENSMUST00000025912 ENSMUSP00000025912 TRANSLATION protein_coding - CCDS70925.1 1 1234.0 13.0 22.8 4.9 586.0 0.0 -4,-6 1.0 33 20.0 PRINCIPAL:1 ENSMUSG00000024960 Plcb3 ENSMUST00000237726 - NO_TRANSLATION retained_intron ENSMUSG00000024960 Plcb3 ENSMUST00000237074 ENSMUSP00000158236 TRANSLATION protein_coding stop - - 191.0 3.0 5.5 0.0 0.0 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000024960 Plcb3 ENSMUST00000237808 ENSMUSP00000158254 TRANSLATION protein_coding start - - 378.0 0.0 4.35 0.0 185.4 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000024960 Plcb3 ENSMUST00000236961 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024960 Plcb3 ENSMUST00000235560 - NO_TRANSLATION retained_intron ENSMUSG00000024960 Plcb3 ENSMUST00000237446 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062844 Or5b105 ENSMUST00000076729 ENSMUSP00000076019 TRANSLATION protein_coding - - - 301.0 0.0 1.0 0.0 170.4 6.0 -4,-5 0.1398 - 12.0 MINOR ENSMUSG00000062844 Or5b105 ENSMUST00000215160 ENSMUSP00000149865 TRANSLATION protein_coding - - 5 307.0 0.0 1.0 8.2 170.4 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000060878 Or10v1 ENSMUST00000072784 ENSMUSP00000072563 TRANSLATION protein_coding - CCDS29617.1 - 309.0 0.0 1.0 6.7 181.9 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060878 Or10v1 ENSMUST00000217281 ENSMUSP00000149208 TRANSLATION protein_coding - CCDS29617.1 5 309.0 0.0 1.0 6.7 181.9 7.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000060878 Or10v1 ENSMUST00000215766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036278 Macrod1 ENSMUST00000040261 ENSMUSP00000039507 TRANSLATION protein_coding - CCDS50376.1 1 323.0 18.0 6.16 5.6 138.1 0.0 -4,0 1.0 9 20.0 PRINCIPAL:1 ENSMUSG00000025192 Entpd7 ENSMUST00000081079 ENSMUSP00000079864 TRANSLATION protein_coding - CCDS29835.1 1 606.0 0.0 7.52 10.6 347.9 0.0 -4,-7 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000025192 Entpd7 ENSMUST00000152786 - NO_TRANSLATION retained_intron ENSMUSG00000025192 Entpd7 ENSMUST00000144314 - NO_TRANSLATION retained_intron ENSMUSG00000025192 Entpd7 ENSMUST00000131293 - NO_TRANSLATION retained_intron ENSMUSG00000025192 Entpd7 ENSMUST00000134481 - NO_TRANSLATION retained_intron ENSMUSG00000025231 Sufu ENSMUST00000111867 ENSMUSP00000107498 TRANSLATION protein_coding - CCDS38008.1 1 485.0 0.0 6.829 10.3 278.7 0.0 -3,-6 0.9983 9 9.0 ALTERNATIVE:1 ENSMUSG00000025231 Sufu ENSMUST00000144341 - NO_TRANSLATION retained_intron ENSMUSG00000025231 Sufu ENSMUST00000120778 ENSMUSP00000112653 TRANSLATION protein_coding - - 2 297.0 0.0 5.5 0.0 65.4 0.0 -3,-6 0.0 7 3.342 MINOR ENSMUSG00000025231 Sufu ENSMUST00000118440 ENSMUSP00000113073 TRANSLATION protein_coding - - 5 467.0 0.0 6.64 0.0 216.1 0.0 -3,-6 0.0193 8 5.622 MINOR ENSMUSG00000025231 Sufu ENSMUST00000123252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025231 Sufu ENSMUST00000039922 ENSMUSP00000049109 TRANSLATION protein_coding - CCDS29879.1 1 484.0 0.0 6.829 10.3 278.7 0.0 -3,-6 1.0 9 9.0 PRINCIPAL:4 ENSMUSG00000025231 Sufu ENSMUST00000235166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034765 Dusp5 ENSMUST00000038287 ENSMUSP00000047900 TRANSLATION protein_coding - CCDS38024.1 5 384.0 8.0 2.12 11.8 192.1 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000061451 Tmem151a ENSMUST00000136372 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061451 Tmem151a ENSMUST00000140389 ENSMUSP00000117156 TRANSLATION protein_coding - - 3 95.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - 4.0 MINOR ENSMUSG00000061451 Tmem151a ENSMUST00000077066 ENSMUSP00000076321 TRANSLATION protein_coding - CCDS29449.1 1 468.0 4.0 0.4 7.1 584.2 0.0 -4,-6 1.0 9 18.0 PRINCIPAL:1 ENSMUSG00000061451 Tmem151a ENSMUST00000151413 ENSMUSP00000121084 TRANSLATION protein_coding stop - 3 72.0 5.0 0.0 0.0 0.0 0.0 -4,-5 0.0009 - -2.0 MINOR ENSMUSG00000061451 Tmem151a ENSMUST00000143677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044948 Cfap43 ENSMUST00000026048 - NO_TRANSLATION retained_intron ENSMUSG00000044948 Cfap43 ENSMUST00000161832 ENSMUSP00000158379 TRANSLATION protein_coding - - 1 562.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.6065 2 0.0 PRINCIPAL:4 ENSMUSG00000044948 Cfap43 ENSMUST00000160970 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044948 Cfap43 ENSMUST00000160247 ENSMUSP00000125007 TRANSLATION protein_coding - CCDS57146.1 5 1682.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5188 2 0.0 ALTERNATIVE:2 ENSMUSG00000044948 Cfap43 ENSMUST00000159204 - NO_TRANSLATION retained_intron ENSMUSG00000044948 Cfap43 ENSMUST00000162657 ENSMUSP00000158062 TRANSLATION nonsense_mediated_decay - - 5 402.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0536 1 -2.0 MINOR ENSMUSG00000044948 Cfap43 ENSMUST00000159999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024842 Cabp4 ENSMUST00000025761 ENSMUSP00000025761 TRANSLATION protein_coding - CCDS29416.1 1 271.0 13.0 3.66 3.3 86.6 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000024842 Cabp4 ENSMUST00000236026 - NO_TRANSLATION retained_intron ENSMUSG00000024842 Cabp4 ENSMUST00000236648 - NO_TRANSLATION retained_intron ENSMUSG00000024842 Cabp4 ENSMUST00000236071 - NO_TRANSLATION retained_intron ENSMUSG00000047787 Flrt1 ENSMUST00000113383 ENSMUSP00000109010 TRANSLATION protein_coding - CCDS29519.1 1 674.0 0.0 0.6 7.9 151.9 0.0 -4,-7 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000058927 Gm10053 ENSMUST00000073080 ENSMUSP00000072829 TRANSLATION protein_coding - - - 105.0 27.0 1.0 36.9 0.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000036097 Slf2 ENSMUST00000236356 - NO_TRANSLATION retained_intron ENSMUSG00000036097 Slf2 ENSMUST00000236895 ENSMUSP00000157598 TRANSLATION nonsense_mediated_decay - - - 687.0 3.0 0.0 0.0 0.0 0.0 -4,0 0.0086 1 -2.0 MINOR ENSMUSG00000036097 Slf2 ENSMUST00000096053 ENSMUSP00000093758 TRANSLATION protein_coding - CCDS37999.1 1 1163.0 3.0 0.0 0.0 477.4 0.0 -4,0 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000118125 Gm50387 ENSMUST00000160852 ENSMUSP00000125570 TRANSLATION nonsense_mediated_decay,RT - CCDS29479.1 2 199.0 4.0 1.75 11.6 59.7 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000025227 Mfsd13a ENSMUST00000086969 ENSMUSP00000084189 TRANSLATION protein_coding - CCDS29877.1 1 519.0 0.0 0.0 11.0 77.5 8.0 0,-4 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000025227 Mfsd13a ENSMUST00000142994 ENSMUSP00000122944 TRANSLATION nonsense_mediated_decay - - 1 320.0 0.0 0.0 0.0 31.7 7.0 0,-4 0.0053 - -2.0 MINOR ENSMUSG00000025227 Mfsd13a ENSMUST00000137143 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025227 Mfsd13a ENSMUST00000128041 ENSMUSP00000119072 TRANSLATION protein_coding - CCDS29877.1 1 519.0 0.0 0.0 11.0 77.5 8.0 0,-4 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000025227 Mfsd13a ENSMUST00000128455 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024990 Rbp4 ENSMUST00000237287 ENSMUSP00000157796 TRANSLATION protein_coding stop - - 122.0 8.0 2.0 0.0 0.0 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000024990 Rbp4 ENSMUST00000025951 ENSMUSP00000025951 TRANSLATION protein_coding - CCDS50430.1 1 245.0 23.0 4.58 0.0 68.9 0.0 -4,-2 0.1135 5 18.0 MINOR ENSMUSG00000024990 Rbp4 ENSMUST00000112335 ENSMUSP00000107954 TRANSLATION protein_coding - CCDS29784.1 1 201.0 23.0 4.58 8.3 68.9 0.0 4,-1 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000024990 Rbp4 ENSMUST00000236283 ENSMUSP00000157743 TRANSLATION protein_coding stop - - 104.0 13.0 2.75 0.0 27.4 0.0 4,-1 0.0006 1 -2.0 MINOR ENSMUSG00000025002 Cyp2c55 ENSMUST00000025966 ENSMUSP00000025966 TRANSLATION protein_coding - CCDS29790.1 1 490.0 33.0 9.0 11.4 511.4 0.0 2,-3 1.0 13 21.0 PRINCIPAL:1 ENSMUSG00000024664 Fads3 ENSMUST00000235562 - NO_TRANSLATION retained_intron ENSMUSG00000024664 Fads3 ENSMUST00000235185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000024664 Fads3 ENSMUST00000237226 ENSMUSP00000158123 TRANSLATION protein_coding start - - 74.0 0.0 2.0 0.0 53.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000024664 Fads3 ENSMUST00000115995 ENSMUSP00000111659 TRANSLATION protein_coding - CCDS29570.1 1 449.0 20.0 11.0 18.3 181.6 2.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000024664 Fads3 ENSMUST00000237672 ENSMUSP00000158307 TRANSLATION protein_coding - - - 383.0 20.0 10.0 1.1 173.9 0.0 -4,-5 0.0294 1 15.564 MINOR ENSMUSG00000024786 Majin ENSMUST00000025699 ENSMUSP00000025699 TRANSLATION protein_coding - - 1 124.0 0.0 1.5 0.0 160.5 0.0 -4,-7 0.0 - 2.502 MINOR ENSMUSG00000024786 Majin ENSMUST00000113528 ENSMUSP00000109156 TRANSLATION protein_coding - CCDS50364.1 1 256.0 0.0 3.25 6.0 424.6 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035372 1810055G02Rik ENSMUST00000237320 ENSMUSP00000158552 TRANSLATION protein_coding stop - - 106.0 0.0 0.0 0.0 0.0 0.0 1,-2 0.1105 - -2.0 MINOR ENSMUSG00000035372 1810055G02Rik ENSMUST00000039048 ENSMUSP00000047063 TRANSLATION protein_coding - CCDS50342.1 1 392.0 0.0 0.0 0.3 0.0 1.0 1,-2 0.9836 - 0.0 PRINCIPAL:1 ENSMUSG00000035372 1810055G02Rik ENSMUST00000235763 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035372 1810055G02Rik ENSMUST00000235837 ENSMUSP00000158554 TRANSLATION protein_coding - CCDS50342.1 - 392.0 0.0 0.0 0.3 0.0 1.0 1,-2 0.9836 - 0.0 PRINCIPAL:1 ENSMUSG00000035372 1810055G02Rik ENSMUST00000235295 ENSMUSP00000157453 TRANSLATION protein_coding - CCDS50342.1 - 392.0 0.0 0.0 0.3 0.0 1.0 1,-2 0.9836 - 0.0 PRINCIPAL:1 ENSMUSG00000035372 1810055G02Rik ENSMUST00000237955 ENSMUSP00000158133 TRANSLATION protein_coding - CCDS50342.1 - 392.0 0.0 0.0 0.3 0.0 1.0 1,-2 0.9836 - 0.0 PRINCIPAL:1 ENSMUSG00000075044 Slc22a29 ENSMUST00000113298 ENSMUSP00000108923 TRANSLATION protein_coding - CCDS29535.1 1 551.0 0.0 4.978 5.5 84.0 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000075044 Slc22a29 ENSMUST00000142517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075044 Slc22a29 ENSMUST00000140910 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000075044 Slc22a29 ENSMUST00000149182 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033033 Calhm2 ENSMUST00000140512 ENSMUSP00000121661 TRANSLATION protein_coding - - 1 322.0 0.0 2.0 0.0 287.3 3.0 -4,-7 0.1823 6 12.0 MINOR ENSMUSG00000033033 Calhm2 ENSMUST00000035822 ENSMUSP00000047278 TRANSLATION protein_coding - CCDS29889.1 1 323.0 0.0 2.0 23.8 287.3 3.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000060613 Cyp2c70 ENSMUST00000051846 ENSMUSP00000060584 TRANSLATION protein_coding - CCDS37976.1 1 489.0 32.0 10.25 5.1 523.6 0.0 2,-3 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000060613 Cyp2c70 ENSMUST00000164351 - NO_TRANSLATION retained_intron ENSMUSG00000060613 Cyp2c70 ENSMUST00000171604 ENSMUSP00000129063 TRANSLATION nonsense_mediated_decay - - 3 76.0 0.0 1.075 0.0 0.0 0.0 2,-3 0.0035 1 -2.0 MINOR ENSMUSG00000060613 Cyp2c70 ENSMUST00000165102 ENSMUSP00000128691 TRANSLATION nonsense_mediated_decay - - 3 72.0 0.0 1.3 0.0 0.0 0.0 2,-3 0.0025 1 -2.0 MINOR ENSMUSG00000059105 Or9i16 ENSMUST00000078282 ENSMUSP00000077400 TRANSLATION protein_coding - CCDS29678.1 - 315.0 0.0 1.0 10.4 156.0 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000059105 Or9i16 ENSMUST00000209192 ENSMUSP00000146610 TRANSLATION protein_coding - CCDS29678.1 3 315.0 0.0 1.0 10.4 156.0 7.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000024768 Lipf ENSMUST00000025680 ENSMUSP00000025680 TRANSLATION protein_coding - CCDS29754.1 1 395.0 7.0 8.0 20.4 87.6 0.0 3,-1 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000039148 Sart1 ENSMUST00000236511 - NO_TRANSLATION retained_intron ENSMUSG00000039148 Sart1 ENSMUST00000235855 - NO_TRANSLATION retained_intron ENSMUSG00000039148 Sart1 ENSMUST00000237915 - NO_TRANSLATION retained_intron ENSMUSG00000039148 Sart1 ENSMUST00000235908 - NO_TRANSLATION retained_intron ENSMUSG00000039148 Sart1 ENSMUST00000235654 ENSMUSP00000157615 TRANSLATION protein_coding stop - - 113.0 0.0 1.9 0.0 48.4 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000039148 Sart1 ENSMUST00000044207 ENSMUSP00000047397 TRANSLATION protein_coding - CCDS29460.1 1 806.0 0.0 2.9 5.6 497.0 0.0 -4,-5 1.0 32 14.0 PRINCIPAL:1 ENSMUSG00000071654 Uqcc3 ENSMUST00000096253 ENSMUSP00000093972 TRANSLATION protein_coding - CCDS50383.1 1 89.0 0.0 2.0 6.3 132.2 0.0 -4,-7 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000071691 Gm960 ENSMUST00000096325 ENSMUSP00000094049 TRANSLATION nonsense_mediated_decay - - 2 162.0 0.0 0.0 0.0 65.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000071691 Gm960 ENSMUST00000226012 - NO_TRANSLATION retained_intron ENSMUSG00000071691 Gm960 ENSMUST00000177696 ENSMUSP00000136515 TRANSLATION protein_coding - CCDS57129.1 5 753.0 0.0 0.0 0.3 747.2 0.0 -4,-2 0.1956 1 3.822 MINOR ENSMUSG00000071691 Gm960 ENSMUST00000225896 ENSMUSP00000153439 TRANSLATION protein_coding - - - 579.0 0.0 0.0 1.8 783.5 0.0 -4,-7 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000071691 Gm960 ENSMUST00000223788 - NO_TRANSLATION retained_intron ENSMUSG00000025221 Kcnip2 ENSMUST00000111906 - NO_TRANSLATION retained_intron ENSMUSG00000025221 Kcnip2 ENSMUST00000162661 ENSMUSP00000124821 TRANSLATION protein_coding stop - 5 172.0 11.0 4.25 0.0 53.4 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000025221 Kcnip2 ENSMUST00000239049 ENSMUSP00000158890 TRANSLATION protein_coding - - - 230.0 18.0 6.08 33.2 88.5 0.0 -1,-5 0.9263 1 22.0 PRINCIPAL:1 ENSMUSG00000025221 Kcnip2 ENSMUST00000079431 ENSMUSP00000078400 TRANSLATION protein_coding - CCDS50453.1 1 252.0 18.0 5.79 19.3 88.5 0.0 -4,-5 0.8486 2 19.69 MINOR ENSMUSG00000025221 Kcnip2 ENSMUST00000159446 ENSMUSP00000125499 TRANSLATION protein_coding start/stop - 3 125.0 0.0 1.75 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025221 Kcnip2 ENSMUST00000162528 ENSMUSP00000125142 TRANSLATION protein_coding - CCDS38004.1 1 270.0 18.0 5.79 7.8 88.5 0.0 -4,-5 0.3592 2 18.262 MINOR ENSMUSG00000025221 Kcnip2 ENSMUST00000159210 ENSMUSP00000124763 TRANSLATION protein_coding start - 3 95.0 6.0 1.75 0.0 26.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025221 Kcnip2 ENSMUST00000086993 ENSMUSP00000084215 TRANSLATION protein_coding - CCDS70955.1 1 225.0 18.0 5.75 26.3 88.5 0.0 -4,0 1.0 1 20.484 MINOR ENSMUSG00000025221 Kcnip2 ENSMUST00000161886 ENSMUSP00000124482 TRANSLATION protein_coding - CCDS29868.1 1 220.0 18.0 5.75 22.7 88.5 0.0 -4,-5 0.9461 1 20.036 MINOR ENSMUSG00000025221 Kcnip2 ENSMUST00000026247 ENSMUSP00000026247 TRANSLATION protein_coding - - 5 252.0 18.0 5.79 19.3 88.5 0.0 -4,-5 0.7325 2 19.69 MINOR ENSMUSG00000025221 Kcnip2 ENSMUST00000159245 ENSMUSP00000124346 TRANSLATION protein_coding start - 5 172.0 12.0 3.4 0.0 60.2 0.0 -4,-1 0.0003 1 -2.0 MINOR ENSMUSG00000024750 Zfand5 ENSMUST00000141568 - NO_TRANSLATION retained_intron ENSMUSG00000024750 Zfand5 ENSMUST00000149144 ENSMUSP00000122782 TRANSLATION nonsense_mediated_decay - - 3 104.0 4.0 1.4 0.0 47.9 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000024750 Zfand5 ENSMUST00000133175 - NO_TRANSLATION retained_intron ENSMUSG00000024750 Zfand5 ENSMUST00000237651 ENSMUSP00000158187 TRANSLATION protein_coding - CCDS29697.1 - 213.0 12.0 3.15 33.9 85.4 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000024750 Zfand5 ENSMUST00000025659 ENSMUSP00000025659 TRANSLATION protein_coding - CCDS29697.1 1 213.0 12.0 3.15 33.9 85.4 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000039901 Armh3 ENSMUST00000045396 ENSMUSP00000048454 TRANSLATION protein_coding - CCDS50454.1 5 689.0 0.0 2.75 35.5 282.8 0.0 -4,-6 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000039901 Armh3 ENSMUST00000235131 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039901 Armh3 ENSMUST00000236730 - NO_TRANSLATION retained_intron ENSMUSG00000045395 Or9i14 ENSMUST00000216659 ENSMUSP00000150330 TRANSLATION protein_coding - CCDS29674.1 5 314.0 0.0 1.0 14.5 150.2 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000045395 Or9i14 ENSMUST00000055672 ENSMUSP00000059747 TRANSLATION protein_coding - CCDS29674.1 - 314.0 0.0 1.0 14.5 150.2 7.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000040929 Rfx3 ENSMUST00000174420 ENSMUSP00000134700 TRANSLATION protein_coding stop - 2 71.0 0.0 0.0 0.0 34.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040929 Rfx3 ENSMUST00000173863 ENSMUSP00000133367 TRANSLATION nonsense_mediated_decay - - 5 458.0 0.0 1.5 0.0 184.5 0.0 -4,-5 0.0049 3 -2.0 MINOR ENSMUSG00000040929 Rfx3 ENSMUST00000173161 - NO_TRANSLATION retained_intron ENSMUSG00000040929 Rfx3 ENSMUST00000165566 ENSMUSP00000126313 TRANSLATION protein_coding - CCDS29725.1 5 749.0 0.0 2.0 17.9 234.5 0.0 -4,-5 1.0 5 15.898 PRINCIPAL:1 ENSMUSG00000040929 Rfx3 ENSMUST00000174850 ENSMUSP00000133461 TRANSLATION protein_coding - CCDS29725.1 1 749.0 0.0 2.0 17.9 234.5 0.0 -4,-5 1.0 5 15.898 PRINCIPAL:1 ENSMUSG00000040929 Rfx3 ENSMUST00000172498 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040929 Rfx3 ENSMUST00000046898 ENSMUSP00000038760 TRANSLATION protein_coding - - 1 724.0 0.0 2.0 4.0 236.2 0.0 -4,-5 0.273 4 12.712 MINOR ENSMUSG00000040929 Rfx3 ENSMUST00000172907 ENSMUSP00000134141 TRANSLATION protein_coding - CCDS29725.1 1 749.0 0.0 2.0 17.9 234.5 0.0 -4,-5 1.0 5 15.898 PRINCIPAL:1 ENSMUSG00000048456 Or5b12 ENSMUST00000213177 ENSMUSP00000151134 TRANSLATION protein_coding - CCDS29644.1 5 314.0 0.0 1.0 12.5 182.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048456 Or5b12 ENSMUST00000213713 ENSMUSP00000149191 TRANSLATION protein_coding - CCDS29644.1 5 314.0 0.0 1.0 12.5 182.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048456 Or5b12 ENSMUST00000054737 ENSMUSP00000055664 TRANSLATION protein_coding - CCDS29644.1 - 314.0 0.0 1.0 12.5 182.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048456 Or5b12 ENSMUST00000216888 ENSMUSP00000149296 TRANSLATION protein_coding - CCDS29644.1 5 314.0 0.0 1.0 12.5 182.6 5.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000045126 Or5b12b ENSMUST00000049624 ENSMUSP00000058933 TRANSLATION protein_coding - CCDS29641.1 - 314.0 0.0 1.0 12.5 183.6 0.0 -3,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000039330 Tsga10ip ENSMUST00000235569 ENSMUSP00000158150 TRANSLATION protein_coding - - - 570.0 0.0 3.5 0.0 0.0 0.0 -4,-5 0.6708 1 6.0 PRINCIPAL:1 ENSMUSG00000039330 Tsga10ip ENSMUST00000044527 ENSMUSP00000047408 TRANSLATION protein_coding start - 1 157.0 0.0 3.0 0.0 0.0 0.0 -4,-2 0.0233 1 -2.0 MINOR ENSMUSG00000055491 Pprc1 ENSMUST00000147640 ENSMUSP00000116857 TRANSLATION protein_coding stop - 3 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055491 Pprc1 ENSMUST00000150158 ENSMUSP00000120475 TRANSLATION protein_coding stop - 3 145.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055491 Pprc1 ENSMUST00000126127 ENSMUSP00000121680 TRANSLATION protein_coding stop - 3 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055491 Pprc1 ENSMUST00000135327 ENSMUSP00000119672 TRANSLATION protein_coding stop - 5 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000055491 Pprc1 ENSMUST00000133101 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055491 Pprc1 ENSMUST00000128386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055491 Pprc1 ENSMUST00000134015 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055491 Pprc1 ENSMUST00000146882 - NO_TRANSLATION retained_intron ENSMUSG00000055491 Pprc1 ENSMUST00000062322 ENSMUSP00000079389 TRANSLATION protein_coding - - 1 1646.0 0.0 1.8 0.0 32.7 0.0 -4,-7 0.6724 - 8.0 ALTERNATIVE:2 ENSMUSG00000055491 Pprc1 ENSMUST00000111899 ENSMUSP00000107530 TRANSLATION protein_coding - CCDS38005.1 1 1644.0 0.0 1.8 0.0 32.7 0.0 -4,-7 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000055491 Pprc1 ENSMUST00000099392 ENSMUSP00000096990 TRANSLATION protein_coding - - 1 1204.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0239 - 0.0 MINOR ENSMUSG00000043715 Or7r1 ENSMUST00000059880 ENSMUSP00000056853 TRANSLATION protein_coding - - 5 311.0 0.0 1.0 4.9 159.1 0.0 -4,-6 0.8632 - 14.0 PRINCIPAL:1 ENSMUSG00000079704 Gm14459 ENSMUST00000115573 ENSMUSP00000111236 TRANSLATION protein_coding - - 5 170.0 0.0 1.8 0.0 82.7 0.0 -4,-5 0.7464 - 12.0 PRINCIPAL:1 ENSMUSG00000031155 Pim2 ENSMUST00000033495 ENSMUSP00000033495 TRANSLATION protein_coding - CCDS29976.1 1 370.0 18.0 4.5 0.0 189.6 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000031155 Pim2 ENSMUST00000126715 - NO_TRANSLATION retained_intron ENSMUSG00000031155 Pim2 ENSMUST00000145177 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046615 Actrt1 ENSMUST00000059466 ENSMUSP00000062570 TRANSLATION protein_coding - CCDS30102.1 - 376.0 33.0 0.8 11.0 366.6 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000041133 Smc1a ENSMUST00000045312 ENSMUSP00000044645 TRANSLATION protein_coding - CCDS30473.1 1 1233.0 6.0 12.5845 28.5 256.8 0.0 -4,-5 1.0 35 21.142 PRINCIPAL:1 ENSMUSG00000041133 Smc1a ENSMUST00000145518 ENSMUSP00000138113 TRANSLATION nonsense_mediated_decay - - 1 54.0 7.0 1.0 0.0 44.2 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000041133 Smc1a ENSMUST00000131395 - NO_TRANSLATION retained_intron ENSMUSG00000041133 Smc1a ENSMUST00000124681 - NO_TRANSLATION retained_intron ENSMUSG00000041133 Smc1a ENSMUST00000135172 - NO_TRANSLATION retained_intron ENSMUSG00000041133 Smc1a ENSMUST00000141457 - NO_TRANSLATION retained_intron ENSMUSG00000031170 Slc38a5 ENSMUST00000127103 ENSMUSP00000115713 TRANSLATION protein_coding stop - 3 103.0 0.0 0.5 0.0 51.6 2.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031170 Slc38a5 ENSMUST00000115591 ENSMUSP00000111254 TRANSLATION protein_coding - - 5 471.0 0.0 3.4685 7.0 297.3 10.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000031170 Slc38a5 ENSMUST00000033512 ENSMUSP00000033512 TRANSLATION protein_coding - CCDS52990.1 1 479.0 0.0 3.4685 3.1 297.3 10.0 -4,-5 0.9309 6 12.7 MINOR ENSMUSG00000031170 Slc38a5 ENSMUST00000115590 ENSMUSP00000111253 TRANSLATION protein_coding - - 2 471.0 0.0 3.4685 7.0 297.3 10.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000031139 Mcf2 ENSMUST00000033478 ENSMUSP00000033478 TRANSLATION protein_coding - CCDS81129.1 1 944.0 0.0 7.6 0.0 190.7 0.0 -4,-2 0.3111 2 7.0 ALTERNATIVE:2 ENSMUSG00000031139 Mcf2 ENSMUST00000063507 ENSMUSP00000067075 TRANSLATION protein_coding - - 1 1031.0 0.0 7.6 0.0 206.0 0.0 -4,-7 0.9576 2 8.0 PRINCIPAL:2 ENSMUSG00000031139 Mcf2 ENSMUST00000101531 ENSMUSP00000099070 TRANSLATION protein_coding - CCDS30160.1 1 928.0 0.0 7.6 0.0 190.7 0.0 -4,-2 0.3131 2 7.0 ALTERNATIVE:2 ENSMUSG00000067215 Usp51 ENSMUST00000095755 ENSMUSP00000093427 TRANSLATION protein_coding - CCDS53226.1 1 661.0 20.0 0.2 0.0 236.8 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000052364 B630019K06Rik ENSMUST00000064196 ENSMUSP00000070261 TRANSLATION protein_coding - - - 333.0 0.0 0.0 0.1 0.0 0.0 -4,-2 0.6118 4 0.0 PRINCIPAL:1 ENSMUSG00000094391 Btbd35f29 ENSMUST00000179532 ENSMUSP00000137428 TRANSLATION protein_coding - - - 498.0 0.0 0.8 5.4 41.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079395 Gm15114 ENSMUST00000112788 ENSMUSP00000108408 TRANSLATION protein_coding - CCDS53212.1 5 433.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:1 ENSMUSG00000079845 Xlr4a ENSMUST00000139191 ENSMUSP00000118018 TRANSLATION protein_coding stop - 5 192.0 0.0 4.15 0.0 129.3 0.0 -4,-6 0.002 - -2.0 MINOR ENSMUSG00000079845 Xlr4a ENSMUST00000114534 ENSMUSP00000110180 TRANSLATION protein_coding stop - 2 73.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000079845 Xlr4a ENSMUST00000156148 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079845 Xlr4a ENSMUST00000078775 ENSMUSP00000077831 TRANSLATION protein_coding - CCDS41005.1 1 215.0 0.0 4.9 0.1 129.3 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000101294 Btbd35f15 ENSMUST00000186329 ENSMUSP00000140464 TRANSLATION protein_coding - CCDS72357.1 - 498.0 0.0 0.8 5.4 40.8 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000058670 Dmtf1l ENSMUST00000081074 ENSMUSP00000079860 TRANSLATION protein_coding - CCDS30382.1 - 470.0 0.0 1.0 0.0 91.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000016409 Nkap ENSMUST00000152906 - NO_TRANSLATION retained_intron ENSMUSG00000016409 Nkap ENSMUST00000016553 ENSMUSP00000016553 TRANSLATION protein_coding - CCDS30069.1 1 415.0 0.0 2.0 9.6 198.0 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000031105 Slc25a14 ENSMUST00000033431 ENSMUSP00000033431 TRANSLATION protein_coding - CCDS30112.1 1 322.0 15.0 5.9249 11.0 221.6 0.0 3,-2 0.4684 3 19.18 MINOR ENSMUSG00000031105 Slc25a14 ENSMUST00000134757 ENSMUSP00000114655 TRANSLATION nonsense_mediated_decay - - 1 35.0 0.0 0.1485 0.0 0.0 0.0 3,-2 0.0007 - -2.0 MINOR ENSMUSG00000031105 Slc25a14 ENSMUST00000153047 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031105 Slc25a14 ENSMUST00000128773 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031105 Slc25a14 ENSMUST00000134257 ENSMUSP00000120332 TRANSLATION protein_coding - CCDS72376.1 5 290.0 15.0 5.75 34.9 221.6 0.0 -4,-7 1.0 3 21.652 PRINCIPAL:1 ENSMUSG00000031105 Slc25a14 ENSMUST00000177710 ENSMUSP00000136140 TRANSLATION protein_coding - CCDS53066.1 1 325.0 15.0 5.9249 11.0 221.6 0.0 3,-2 0.4735 3 19.18 MINOR ENSMUSG00000031105 Slc25a14 ENSMUST00000114936 ENSMUSP00000110586 TRANSLATION protein_coding - CCDS53066.1 5 325.0 15.0 5.9249 11.0 221.6 0.0 3,-2 0.4735 3 19.18 MINOR ENSMUSG00000031105 Slc25a14 ENSMUST00000150221 - NO_TRANSLATION retained_intron ENSMUSG00000036932 Aifm1 ENSMUST00000143466 - NO_TRANSLATION retained_intron ENSMUSG00000036932 Aifm1 ENSMUST00000124623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036932 Aifm1 ENSMUST00000156795 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036932 Aifm1 ENSMUST00000037349 ENSMUSP00000041104 TRANSLATION protein_coding - CCDS30109.1 1 612.0 48.0 12.0 9.9 236.3 1.0 -4,-1 0.7063 23 18.546 MINOR ENSMUSG00000036932 Aifm1 ENSMUST00000114945 ENSMUSP00000110595 TRANSLATION protein_coding - CCDS72375.1 5 608.0 48.0 12.0 9.9 277.2 1.0 -4,0 1.0 23 21.0 PRINCIPAL:1 ENSMUSG00000079633 Rhox4d ENSMUST00000115175 ENSMUSP00000110829 TRANSLATION protein_coding - CCDS40935.1 1 205.0 0.0 1.7 0.0 37.8 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079633 Rhox4d ENSMUST00000172476 - NO_TRANSLATION retained_intron ENSMUSG00000078208 Fthl17b ENSMUST00000105006 ENSMUSP00000100623 TRANSLATION protein_coding - CCDS52993.1 - 176.0 0.0 1.0 5.6 95.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000091556 Gm14569 ENSMUST00000167210 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091556 Gm14569 ENSMUST00000169499 ENSMUSP00000126231 TRANSLATION protein_coding - - 5 1637.0 0.0 0.0 0.0 40.8 0.0 -4,-5 0.8995 7 6.0 PRINCIPAL:1 ENSMUSG00000091556 Gm14569 ENSMUST00000140106 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000091556 Gm14569 ENSMUST00000148691 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056537 Rlim ENSMUST00000121153 ENSMUSP00000112820 TRANSLATION protein_coding - CCDS30331.1 1 600.0 8.0 0.0 1.6 49.4 0.0 -4,-5 0.9982 10 13.0 PRINCIPAL:1 ENSMUSG00000056537 Rlim ENSMUST00000070705 ENSMUSP00000070662 TRANSLATION protein_coding - CCDS30331.1 1 600.0 8.0 0.0 1.6 49.4 0.0 -4,-5 0.9982 10 13.0 PRINCIPAL:1 ENSMUSG00000056537 Rlim ENSMUST00000135101 - NO_TRANSLATION retained_intron ENSMUSG00000067649 Mageb18 ENSMUST00000088137 ENSMUSP00000085460 TRANSLATION protein_coding - CCDS30268.1 - 327.0 0.0 0.6 1.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000067649 Mageb18 ENSMUST00000113955 ENSMUSP00000109588 TRANSLATION protein_coding - CCDS30268.1 5 327.0 0.0 0.6 1.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054727 1700013H16Rik ENSMUST00000067940 ENSMUSP00000063474 TRANSLATION protein_coding - CCDS53071.1 1 291.0 0.0 4.73 0.0 139.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050926 Dcaf12l2 ENSMUST00000115057 ENSMUSP00000110709 TRANSLATION protein_coding - CCDS30100.1 - 469.0 0.0 0.0 8.4 15.7 0.0 -4,-7 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000079435 Rpl36a ENSMUST00000172023 - NO_TRANSLATION retained_intron ENSMUSG00000079435 Rpl36a ENSMUST00000113211 ENSMUSP00000108837 TRANSLATION protein_coding - CCDS41123.1 1 106.0 2.0 3.41 36.9 137.7 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000079435 Rpl36a ENSMUST00000169457 - NO_TRANSLATION retained_intron ENSMUSG00000079435 Rpl36a ENSMUST00000152266 - NO_TRANSLATION retained_intron ENSMUSG00000079435 Rpl36a ENSMUST00000149857 - NO_TRANSLATION retained_intron ENSMUSG00000079435 Rpl36a ENSMUST00000170828 ENSMUSP00000126110 TRANSLATION nonsense_mediated_decay - - 2 67.0 2.0 1.0 0.0 29.6 0.0 -4,-5 0.0007 - -2.0 MINOR ENSMUSG00000025271 Pfkfb1 ENSMUST00000142848 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025271 Pfkfb1 ENSMUST00000150783 - NO_TRANSLATION retained_intron ENSMUSG00000025271 Pfkfb1 ENSMUST00000080884 ENSMUSP00000079692 TRANSLATION protein_coding - CCDS30464.1 1 448.0 29.0 11.462 12.2 344.6 0.0 -4,-5 0.8125 10 19.102 MINOR ENSMUSG00000025271 Pfkfb1 ENSMUST00000112713 ENSMUSP00000108333 TRANSLATION protein_coding - - 5 471.0 29.0 11.73 27.6 345.4 0.0 -4,-2 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000025271 Pfkfb1 ENSMUST00000124381 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025271 Pfkfb1 ENSMUST00000153221 ENSMUSP00000115844 TRANSLATION protein_coding stop - 5 198.0 7.0 5.462 0.0 297.5 0.0 -4,-5 0.0045 4 -2.0 MINOR ENSMUSG00000025271 Pfkfb1 ENSMUST00000154528 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094196 Magea3 ENSMUST00000079867 ENSMUSP00000078793 TRANSLATION protein_coding - CCDS30489.1 - 320.0 0.0 0.6 0.1 26.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035395 Dcaf8l ENSMUST00000113959 ENSMUSP00000109592 TRANSLATION protein_coding - CCDS30263.1 5 747.0 0.0 0.6 0.0 56.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035395 Dcaf8l ENSMUST00000113960 ENSMUSP00000109593 TRANSLATION protein_coding - CCDS30263.1 1 747.0 0.0 0.6 0.0 56.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000018595 Glra4 ENSMUST00000018739 ENSMUSP00000018739 TRANSLATION protein_coding - CCDS53195.1 1 456.0 0.0 6.5 10.0 294.1 0.0 2,-2 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000018595 Glra4 ENSMUST00000154833 - NO_TRANSLATION retained_intron ENSMUSG00000050071 Bex1 ENSMUST00000058125 ENSMUSP00000060005 TRANSLATION protein_coding - CCDS30417.1 1 128.0 0.0 0.0 9.1 65.7 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000050071 Bex1 ENSMUST00000113118 ENSMUSP00000108743 TRANSLATION protein_coding - CCDS30417.1 2 128.0 0.0 0.0 9.1 65.7 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000050071 Bex1 ENSMUST00000113120 ENSMUSP00000108745 TRANSLATION protein_coding - CCDS30417.1 3 128.0 0.0 0.0 9.1 65.7 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000050071 Bex1 ENSMUST00000142172 - NO_TRANSLATION retained_intron ENSMUSG00000031400 G6pdx ENSMUST00000135894 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031400 G6pdx ENSMUST00000143521 ENSMUSP00000115915 TRANSLATION protein_coding stop - 5 396.0 24.0 8.1 0.0 472.9 0.0 -4,-5 0.0034 15 -2.0 MINOR ENSMUSG00000031400 G6pdx ENSMUST00000004327 ENSMUSP00000004327 TRANSLATION protein_coding - CCDS30232.1 1 515.0 36.0 11.6 16.3 596.6 0.0 -4,-5 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000031400 G6pdx ENSMUST00000155963 - NO_TRANSLATION retained_intron ENSMUSG00000031245 Hmgn5 ENSMUST00000033597 ENSMUSP00000033597 TRANSLATION protein_coding - CCDS41101.1 1 406.0 0.0 0.0 0.0 76.3 0.0 -4,-2 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000037010 Apln ENSMUST00000039026 ENSMUSP00000046012 TRANSLATION protein_coding - CCDS40958.1 1 77.0 0.0 0.0 11.6 103.9 0.0 4,-1 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000025630 Hprt ENSMUST00000026723 ENSMUSP00000026723 TRANSLATION protein_coding - CCDS40972.1 1 218.0 13.0 5.91 24.3 0.0 0.0 -4,-5 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000031411 Pramex1 ENSMUST00000113159 ENSMUSP00000108784 TRANSLATION protein_coding - - 5 462.0 0.0 1.52 0.4 0.0 0.0 -4,-7 0.6907 - 6.0 PRINCIPAL:1 ENSMUSG00000032750 Gab3 ENSMUST00000129495 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032750 Gab3 ENSMUST00000114109 ENSMUSP00000109744 TRANSLATION protein_coding - - 2 244.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0642 - 6.0 MINOR ENSMUSG00000032750 Gab3 ENSMUST00000127024 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000032750 Gab3 ENSMUST00000037374 ENSMUSP00000041951 TRANSLATION protein_coding - CCDS30235.1 1 595.0 9.0 0.61 0.0 69.3 0.0 -4,-6 0.9535 - 11.66 PRINCIPAL:2 ENSMUSG00000032750 Gab3 ENSMUST00000114104 ENSMUSP00000109739 TRANSLATION protein_coding - - 5 556.0 9.0 0.61 0.0 69.3 0.0 -4,-6 0.0656 - 11.66 ALTERNATIVE:2 ENSMUSG00000031365 Zfp275 ENSMUST00000139996 - NO_TRANSLATION retained_intron ENSMUSG00000031365 Zfp275 ENSMUST00000114499 ENSMUSP00000110143 TRANSLATION protein_coding - CCDS53097.1 1 377.0 44.0 1.0 3.4 188.1 0.0 -4,-5 0.6319 - 17.574 MINOR ENSMUSG00000031365 Zfp275 ENSMUST00000033731 ENSMUSP00000033731 TRANSLATION protein_coding - CCDS30199.2 1 499.0 44.0 1.264 3.9 188.1 0.0 -3,-6 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000031095 Cul4b ENSMUST00000115118 ENSMUSP00000110771 TRANSLATION protein_coding - CCDS40948.1 1 970.0 0.0 17.75 0.1 793.2 0.0 -4,-5 0.4965 21 8.0 ALTERNATIVE:2 ENSMUSG00000031095 Cul4b ENSMUST00000147129 ENSMUSP00000136083 TRANSLATION nonsense_mediated_decay - - 2 552.0 0.0 9.0 0.0 322.5 0.0 -4,-6 0.0009 16 -2.0 MINOR ENSMUSG00000031095 Cul4b ENSMUST00000016681 ENSMUSP00000016681 TRANSLATION protein_coding - - 5 896.0 0.0 17.75 1.7 793.2 0.0 -4,-6 1.0 20 9.0 PRINCIPAL:2 ENSMUSG00000031095 Cul4b ENSMUST00000050083 ENSMUSP00000059276 TRANSLATION protein_coding - CCDS40948.1 1 970.0 0.0 17.75 0.1 793.2 0.0 -4,-5 0.4965 21 8.0 ALTERNATIVE:2 ENSMUSG00000056679 Gpr173 ENSMUST00000070316 ENSMUSP00000065533 TRANSLATION protein_coding - CCDS30475.1 1 373.0 0.0 0.4 21.7 104.1 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000056679 Gpr173 ENSMUST00000137840 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031134 Rbmx ENSMUST00000143310 ENSMUSP00000138198 TRANSLATION protein_coding - - 5 263.0 0.0 0.0 0.0 81.1 0.0 -4,-5 0.0 - 0.924 MINOR ENSMUSG00000031134 Rbmx ENSMUST00000098470 ENSMUSP00000096070 TRANSLATION protein_coding - - 5 301.0 0.0 3.0 0.0 165.7 0.0 -4,-5 0.0204 2 12.0 MINOR ENSMUSG00000031134 Rbmx ENSMUST00000140384 ENSMUSP00000125720 TRANSLATION nonsense_mediated_decay - - 1 289.0 0.0 3.0 2.0 165.7 0.0 -4,-5 0.2366 2 -2.0 MINOR ENSMUSG00000031134 Rbmx ENSMUST00000133346 ENSMUSP00000118121 TRANSLATION protein_coding stop - 3 103.0 0.0 3.0 0.0 84.6 0.0 -4,-5 0.023 1 -2.0 MINOR ENSMUSG00000031134 Rbmx ENSMUST00000114730 ENSMUSP00000110378 TRANSLATION protein_coding - CCDS30153.1 5 391.0 0.0 3.0 11.3 165.7 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000031134 Rbmx ENSMUST00000114726 ENSMUSP00000110374 TRANSLATION protein_coding - CCDS30153.1 1 391.0 0.0 3.0 11.3 165.7 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000032894 1700031F05Rik ENSMUST00000048061 ENSMUSP00000044360 TRANSLATION protein_coding - CCDS53160.1 1 191.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.842 - 0.0 PRINCIPAL:1 ENSMUSG00000032894 1700031F05Rik ENSMUST00000124592 ENSMUSP00000136319 TRANSLATION nonsense_mediated_decay - CCDS53160.1 1 191.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.842 - -2.0 MINOR ENSMUSG00000072955 Tmsb15l ENSMUST00000127404 ENSMUSP00000118704 TRANSLATION protein_coding,RT - CCDS53197.1 2 80.0 0.0 1.83 0.0 118.7 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000031160 Eras ENSMUST00000033500 ENSMUSP00000033500 TRANSLATION protein_coding - CCDS29980.1 1 227.0 20.0 1.0 4.7 118.1 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000039231 Suv39h1 ENSMUST00000127617 - NO_TRANSLATION retained_intron ENSMUSG00000039231 Suv39h1 ENSMUST00000115638 ENSMUSP00000111301 TRANSLATION protein_coding - CCDS40846.1 1 412.0 42.0 3.3 20.9 199.2 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000039231 Suv39h1 ENSMUST00000115637 ENSMUSP00000111300 TRANSLATION protein_coding - CCDS72337.1 2 413.0 42.0 3.3 0.4 199.2 0.0 -4,-5 0.3497 8 18.0 MINOR ENSMUSG00000039231 Suv39h1 ENSMUST00000115636 ENSMUSP00000111299 TRANSLATION protein_coding - - 1 286.0 16.0 1.3 0.0 114.9 0.0 -4,-5 0.0 7 2.94 MINOR ENSMUSG00000039231 Suv39h1 ENSMUST00000150095 - NO_TRANSLATION retained_intron ENSMUSG00000000355 Mcts1 ENSMUST00000134573 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000355 Mcts1 ENSMUST00000133128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000355 Mcts1 ENSMUST00000140204 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000355 Mcts1 ENSMUST00000148938 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000355 Mcts1 ENSMUST00000000365 ENSMUSP00000000365 TRANSLATION protein_coding - CCDS30094.1 1 181.0 0.0 4.5 34.9 74.0 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000001962 Fam50a ENSMUST00000149312 - NO_TRANSLATION retained_intron ENSMUSG00000001962 Fam50a ENSMUST00000138242 - NO_TRANSLATION retained_intron ENSMUSG00000001962 Fam50a ENSMUST00000114160 ENSMUSP00000109797 TRANSLATION protein_coding - CCDS41021.1 1 339.0 0.0 0.0 26.9 289.8 0.0 -4,-6 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000100249 Btbd35f23 ENSMUST00000189190 ENSMUSP00000140013 TRANSLATION protein_coding - CCDS57720.1 - 498.0 0.0 0.8 5.4 40.5 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031167 Rbm3 ENSMUST00000115616 ENSMUSP00000111279 TRANSLATION protein_coding - CCDS29987.1 1 154.0 0.0 3.0 11.0 86.4 0.0 -4,-5 1.0 5 11.0 ALTERNATIVE:1 ENSMUSG00000031167 Rbm3 ENSMUST00000115621 ENSMUSP00000111284 TRANSLATION protein_coding - CCDS52988.1 1 153.0 0.0 3.0 11.0 86.4 0.0 -4,-5 0.9805 6 11.0 PRINCIPAL:3 ENSMUSG00000031167 Rbm3 ENSMUST00000141629 ENSMUSP00000138705 TRANSLATION nonsense_mediated_decay - - 1 90.0 0.0 2.45 0.0 82.1 0.0 -4,-5 0.012 - -2.0 MINOR ENSMUSG00000031167 Rbm3 ENSMUST00000141925 - NO_TRANSLATION retained_intron ENSMUSG00000031167 Rbm3 ENSMUST00000145450 - NO_TRANSLATION retained_intron ENSMUSG00000031167 Rbm3 ENSMUST00000115617 ENSMUSP00000111280 TRANSLATION protein_coding - CCDS29987.1 1 154.0 0.0 3.0 11.0 86.4 0.0 -4,-5 1.0 5 11.0 ALTERNATIVE:1 ENSMUSG00000031167 Rbm3 ENSMUST00000129947 ENSMUSP00000138456 TRANSLATION nonsense_mediated_decay - - 5 90.0 0.0 2.45 0.0 82.1 0.0 -4,-5 0.012 2 -2.0 MINOR ENSMUSG00000031167 Rbm3 ENSMUST00000040010 ENSMUSP00000038964 TRANSLATION protein_coding - CCDS29987.1 1 154.0 0.0 3.0 11.0 86.4 0.0 -4,-5 1.0 5 11.0 ALTERNATIVE:1 ENSMUSG00000031167 Rbm3 ENSMUST00000155599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031167 Rbm3 ENSMUST00000115619 ENSMUSP00000111282 TRANSLATION protein_coding - CCDS52988.1 3 153.0 0.0 3.0 11.0 86.4 0.0 -4,-5 0.9805 6 11.0 PRINCIPAL:3 ENSMUSG00000031167 Rbm3 ENSMUST00000115615 ENSMUSP00000111277 TRANSLATION protein_coding - CCDS52988.1 1 153.0 0.0 3.0 11.0 86.4 0.0 -4,-5 0.9805 6 11.0 PRINCIPAL:3 ENSMUSG00000121519 ENSMUSG00000121519 ENSMUST00000249144 ENSMUSP00000159592 TRANSLATION protein_coding - - - 6688.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - 0.0 PRINCIPAL:1 ENSMUSG00000059401 Mamld1 ENSMUST00000239162 ENSMUSP00000159081 TRANSLATION protein_coding - - - 748.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6415 1 0.0 ALTERNATIVE:2 ENSMUSG00000059401 Mamld1 ENSMUST00000114629 ENSMUSP00000110276 TRANSLATION protein_coding - CCDS57760.1 5 766.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.478 3 0.0 PRINCIPAL:3 ENSMUSG00000059401 Mamld1 ENSMUST00000082088 ENSMUSP00000080737 TRANSLATION protein_coding - CCDS57759.1 5 803.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.3132 3 0.0 ALTERNATIVE:2 ENSMUSG00000036131 Frmd7 ENSMUST00000060650 ENSMUSP00000057103 TRANSLATION protein_coding - CCDS53067.1 5 703.0 0.0 7.63 1.9 228.2 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000036131 Frmd7 ENSMUST00000164311 ENSMUSP00000126628 TRANSLATION nonsense_mediated_decay - - 5 85.0 0.0 1.9 0.0 57.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059690 1700020N15Rik ENSMUST00000075654 ENSMUSP00000075079 TRANSLATION protein_coding - CCDS57758.1 1 112.0 0.0 0.0 0.1 0.0 0.0 -4,-5 0.8643 - 0.0 PRINCIPAL:1 ENSMUSG00000035476 Tab3 ENSMUST00000048250 ENSMUSP00000039668 TRANSLATION protein_coding - CCDS41049.1 1 716.0 4.0 2.2 8.1 42.4 0.0 -4,-5 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000035476 Tab3 ENSMUST00000137438 ENSMUSP00000117932 TRANSLATION protein_coding stop - 2 108.0 0.0 1.2 0.0 42.4 0.0 -4,-5 0.0095 1 -2.0 MINOR ENSMUSG00000035476 Tab3 ENSMUST00000146063 ENSMUSP00000120992 TRANSLATION protein_coding stop - 5 38.0 0.0 1.0 0.0 30.3 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000035476 Tab3 ENSMUST00000152880 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067679 Obp1b ENSMUST00000088198 ENSMUSP00000085528 TRANSLATION protein_coding - CCDS81146.1 1 171.0 0.0 3.75 0.0 72.5 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073294 Ezhip ENSMUST00000117544 ENSMUSP00000114041 TRANSLATION protein_coding - CCDS52981.1 - 589.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.241 - 0.0 ALTERNATIVE:2 ENSMUSG00000073294 Ezhip ENSMUST00000101698 ENSMUSP00000099222 TRANSLATION protein_coding - CCDS52982.1 1 468.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8898 - 0.0 PRINCIPAL:2 ENSMUSG00000046532 Ar ENSMUST00000052837 ENSMUSP00000052648 TRANSLATION protein_coding - CCDS30294.1 1 899.0 29.0 7.0 0.4 958.4 0.0 -4,-1 1.0 15 18.0 PRINCIPAL:1 ENSMUSG00000031065 Cdk16 ENSMUST00000125035 - NO_TRANSLATION retained_intron ENSMUSG00000031065 Cdk16 ENSMUST00000132365 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031065 Cdk16 ENSMUST00000115364 ENSMUSP00000111021 TRANSLATION protein_coding - CCDS81103.1 1 461.0 18.0 9.5 0.0 237.6 0.0 -4,-5 0.0626 5 18.0 MINOR ENSMUSG00000031065 Cdk16 ENSMUST00000146259 - NO_TRANSLATION retained_intron ENSMUSG00000031065 Cdk16 ENSMUST00000122944 - NO_TRANSLATION retained_intron ENSMUSG00000031065 Cdk16 ENSMUST00000129914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031065 Cdk16 ENSMUST00000033380 ENSMUSP00000033380 TRANSLATION protein_coding - CCDS30045.1 1 496.0 18.0 9.5 8.2 237.6 0.0 -4,-6 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000031065 Cdk16 ENSMUST00000148757 - NO_TRANSLATION retained_intron ENSMUSG00000096966 Pnma6e ENSMUST00000180787 ENSMUSP00000146964 TRANSLATION protein_coding - - - 765.0 0.0 0.2 0.0 420.0 0.0 -2,-3 0.8828 1 12.0 PRINCIPAL:1 ENSMUSG00000096788 Rhox2e ENSMUST00000072167 ENSMUSP00000072030 TRANSLATION protein_coding - CCDS53055.1 5 191.0 0.0 1.2 0.3 47.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096788 Rhox2e ENSMUST00000184746 ENSMUSP00000139210 TRANSLATION protein_coding start - 5 191.0 0.0 0.898 0.0 33.9 0.0 -4,-5 0.2973 - -2.0 MINOR ENSMUSG00000095063 Slx ENSMUST00000096913 ENSMUSP00000094676 TRANSLATION protein_coding - CCDS53026.1 5 212.0 0.0 2.5 0.0 38.5 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031142 Cacna1f ENSMUST00000123979 - NO_TRANSLATION retained_intron ENSMUSG00000031142 Cacna1f ENSMUST00000156047 ENSMUSP00000115012 TRANSLATION protein_coding stop - 5 247.0 0.0 6.5 0.0 276.7 4.0 -4,0 0.0029 - -2.0 MINOR ENSMUSG00000031142 Cacna1f ENSMUST00000128628 ENSMUSP00000119207 TRANSLATION protein_coding stop - 3 229.0 0.0 5.764 0.0 241.3 4.0 -4,-7 0.0024 - -2.0 MINOR ENSMUSG00000031142 Cacna1f ENSMUST00000133637 ENSMUSP00000116051 TRANSLATION protein_coding stop - 1 844.0 0.0 8.448 0.0 418.6 11.0 -4,-5 0.006 - -2.0 MINOR ENSMUSG00000031142 Cacna1f ENSMUST00000155090 ENSMUSP00000138116 TRANSLATION nonsense_mediated_decay - - 5 431.0 0.0 6.132 0.0 236.4 6.0 -4,-5 0.0024 - -2.0 MINOR ENSMUSG00000031142 Cacna1f ENSMUST00000157000 - NO_TRANSLATION retained_intron ENSMUSG00000031142 Cacna1f ENSMUST00000141634 - NO_TRANSLATION retained_intron ENSMUSG00000031142 Cacna1f ENSMUST00000115725 ENSMUSP00000111390 TRANSLATION protein_coding - - 5 1977.0 0.0 27.948 0.7 1589.0 19.0 -4,-5 0.398 - 11.382 MINOR ENSMUSG00000031142 Cacna1f ENSMUST00000144522 - NO_TRANSLATION retained_intron ENSMUSG00000031142 Cacna1f ENSMUST00000115726 ENSMUSP00000111391 TRANSLATION protein_coding - CCDS40840.1 1 1984.0 0.0 28.212 2.5 1590.5 19.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031142 Cacna1f ENSMUST00000151208 - NO_TRANSLATION retained_intron ENSMUSG00000060726 Tmsb15a ENSMUST00000073674 ENSMUSP00000073355 TRANSLATION protein_coding - CCDS41130.1 1 45.0 0.0 1.33 19.3 65.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000060726 Tmsb15a ENSMUST00000113154 ENSMUSP00000108779 TRANSLATION protein_coding - - 5 79.0 0.0 1.33 0.0 65.5 0.0 -4,-6 0.0336 1 12.0 MINOR ENSMUSG00000015401 Cltrn ENSMUST00000141818 ENSMUSP00000123629 TRANSLATION protein_coding stop - 5 60.0 0.0 1.83 0.0 58.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000015401 Cltrn ENSMUST00000112280 ENSMUSP00000107899 TRANSLATION protein_coding - CCDS30517.1 5 222.0 0.0 3.83 12.3 222.4 1.0 3,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000015401 Cltrn ENSMUST00000015545 ENSMUSP00000015545 TRANSLATION protein_coding - CCDS30517.1 1 222.0 0.0 3.83 12.3 222.4 1.0 3,-3 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067441 H2ab1 ENSMUST00000122446 ENSMUSP00000138181 TRANSLATION protein_coding - CCDS72425.1 - 115.0 0.0 1.0 2.3 0.0 0.0 -4,-1 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000025597 Klhl4 ENSMUST00000113371 ENSMUSP00000108998 TRANSLATION protein_coding - CCDS72423.1 1 711.0 0.0 10.25 6.1 455.0 0.0 -4,-7 0.7259 9 11.799 MINOR ENSMUSG00000025597 Klhl4 ENSMUST00000040504 ENSMUSP00000038080 TRANSLATION protein_coding - CCDS41108.2 1 717.0 0.0 10.58 8.3 482.3 0.0 -4,-7 1.0 10 15.0 PRINCIPAL:1 ENSMUSG00000025597 Klhl4 ENSMUST00000133447 ENSMUSP00000118072 TRANSLATION protein_coding start - 1 624.0 0.0 9.5 0.0 423.4 0.0 -4,-6 0.0018 9 -2.0 MINOR ENSMUSG00000067971 Or5o1 ENSMUST00000215918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067971 Or5o1 ENSMUST00000216611 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067971 Or5o1 ENSMUST00000215373 ENSMUSP00000149462 TRANSLATION protein_coding - CCDS30117.1 5 319.0 0.0 1.0 0.0 177.8 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067971 Or5o1 ENSMUST00000088876 ENSMUSP00000086263 TRANSLATION protein_coding - CCDS30117.1 - 319.0 0.0 1.0 0.0 177.8 7.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031342 Gpm6b ENSMUST00000112226 ENSMUSP00000107845 TRANSLATION protein_coding - CCDS53246.1 1 265.0 0.0 0.0 19.9 343.0 11.0 -4,-6 0.8693 3 4.276 MINOR ENSMUSG00000031342 Gpm6b ENSMUST00000143263 ENSMUSP00000135378 TRANSLATION nonsense_mediated_decay - - 1 49.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031342 Gpm6b ENSMUST00000129731 - NO_TRANSLATION retained_intron ENSMUSG00000031342 Gpm6b ENSMUST00000112229 ENSMUSP00000107848 TRANSLATION protein_coding - CCDS53245.1 1 328.0 0.0 0.0 17.8 343.2 9.0 -4,-5 0.7462 9 4.024 MINOR ENSMUSG00000031342 Gpm6b ENSMUST00000112228 ENSMUSP00000107847 TRANSLATION protein_coding - CCDS53247.1 1 288.0 0.0 0.0 26.0 343.2 9.0 -4,-6 0.9018 6 5.012 ALTERNATIVE:1 ENSMUSG00000031342 Gpm6b ENSMUST00000112223 ENSMUSP00000107842 TRANSLATION protein_coding - CCDS53244.1 1 305.0 0.0 0.0 17.8 343.0 11.0 -4,-5 0.7925 6 4.024 MINOR ENSMUSG00000031342 Gpm6b ENSMUST00000112224 ENSMUSP00000107843 TRANSLATION protein_coding - CCDS53246.1 1 265.0 0.0 0.0 19.9 343.0 11.0 -4,-6 0.8693 3 4.276 MINOR ENSMUSG00000031342 Gpm6b ENSMUST00000112235 ENSMUSP00000107854 TRANSLATION protein_coding - CCDS53243.1 1 246.0 0.0 0.0 16.0 343.0 11.0 -3,-5 0.6987 3 3.808 MINOR ENSMUSG00000031342 Gpm6b ENSMUST00000112233 ENSMUSP00000107852 TRANSLATION protein_coding - CCDS53243.1 1 246.0 0.0 0.0 16.0 343.0 11.0 -3,-5 0.6987 3 3.808 MINOR ENSMUSG00000031342 Gpm6b ENSMUST00000112227 ENSMUSP00000107846 TRANSLATION protein_coding - CCDS53244.1 1 305.0 0.0 0.0 17.8 343.0 11.0 -4,-5 0.7925 6 4.024 MINOR ENSMUSG00000031342 Gpm6b ENSMUST00000060210 ENSMUSP00000060442 TRANSLATION protein_coding - CCDS30526.1 1 269.0 0.0 0.0 34.2 343.2 9.0 -3,-5 1.0 6 6.0 PRINCIPAL:4 ENSMUSG00000031342 Gpm6b ENSMUST00000123408 ENSMUSP00000134741 TRANSLATION nonsense_mediated_decay - - 1 89.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000118483 ENSMUSG00000118483 ENSMUST00000238503 ENSMUSP00000158686 TRANSLATION protein_coding - - - 212.0 0.0 0.5 0.1 0.0 0.0 -4,-1 0.699 - 6.0 PRINCIPAL:1 ENSMUSG00000094860 Btbd35f27 ENSMUST00000178143 ENSMUSP00000137066 TRANSLATION protein_coding - CCDS57726.1 - 498.0 0.0 0.8 5.4 36.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044150 Bclaf3 ENSMUST00000131623 ENSMUSP00000116320 TRANSLATION protein_coding stop - 3 60.0 0.0 0.0 0.0 54.3 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000044150 Bclaf3 ENSMUST00000149054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044150 Bclaf3 ENSMUST00000112464 ENSMUSP00000108083 TRANSLATION protein_coding - CCDS30503.2 1 752.0 0.0 0.0 0.0 538.8 0.0 -4,0 1.0 4 6.0 PRINCIPAL:1 ENSMUSG00000044150 Bclaf3 ENSMUST00000154694 - NO_TRANSLATION retained_intron ENSMUSG00000044150 Bclaf3 ENSMUST00000057180 ENSMUSP00000051031 TRANSLATION protein_coding - - 1 674.0 0.0 0.0 0.0 510.4 0.0 -4,0 0.0207 4 4.296 MINOR ENSMUSG00000044150 Bclaf3 ENSMUST00000144598 ENSMUSP00000121868 TRANSLATION protein_coding stop - 5 43.0 0.0 0.0 0.0 39.4 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000071772 Rhox3a ENSMUST00000185028 ENSMUSP00000139384 TRANSLATION protein_coding start - 5 187.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071772 Rhox3a ENSMUST00000185050 ENSMUSP00000139048 TRANSLATION protein_coding start - 5 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071772 Rhox3a ENSMUST00000115203 ENSMUSP00000110857 TRANSLATION protein_coding - CCDS30076.1 1 215.0 0.0 1.8 0.0 42.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078346 H2al1n ENSMUST00000105137 ENSMUSP00000100769 TRANSLATION protein_coding - CCDS40879.1 - 109.0 0.0 1.0 0.0 34.0 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000008035 Mid1ip1 ENSMUST00000144356 ENSMUSP00000122463 TRANSLATION protein_coding stop - 2 51.0 0.0 0.6 0.0 89.2 0.0 -4,-5 0.0194 1 -2.0 MINOR ENSMUSG00000008035 Mid1ip1 ENSMUST00000008179 ENSMUSP00000008179 TRANSLATION protein_coding - CCDS30018.1 1 182.0 0.0 -0.35 10.3 220.8 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000008035 Mid1ip1 ENSMUST00000125623 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000008035 Mid1ip1 ENSMUST00000156321 ENSMUSP00000120996 TRANSLATION protein_coding stop - 2 51.0 0.0 0.6 0.0 89.2 0.0 -4,-5 0.0194 1 -2.0 MINOR ENSMUSG00000008035 Mid1ip1 ENSMUST00000115524 ENSMUSP00000111186 TRANSLATION protein_coding - CCDS30018.1 1 182.0 0.0 -0.35 10.3 220.8 0.0 -4,-5 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000047678 Gpr82 ENSMUST00000053659 ENSMUSP00000062535 TRANSLATION protein_coding - CCDS30029.1 1 328.0 0.0 0.2 0.4 77.8 0.0 -3,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000121607 ENSMUSG00000121607 ENSMUST00000249671 ENSMUSP00000159849 TRANSLATION protein_coding - - - 269.0 0.0 1.0 0.0 115.3 0.0 -,- 0.0 2 2.808 MINOR ENSMUSG00000121607 ENSMUSG00000121607 ENSMUST00000249669 ENSMUSP00000159848 TRANSLATION nonsense_mediated_decay - - - 190.0 0.0 1.0 0.0 115.3 0.0 -,- 0.0 2 -2.0 MINOR ENSMUSG00000121607 ENSMUSG00000121607 ENSMUST00000249668 ENSMUSP00000159847 TRANSLATION protein_coding - - - 945.0 6.0 2.1375 0.0 574.8 0.0 -,- 0.8649 10 18.0 PRINCIPAL:1 ENSMUSG00000121607 ENSMUSG00000121607 ENSMUST00000249670 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000121524 ENSMUSG00000121524 ENSMUST00000249149 ENSMUSP00000159596 TRANSLATION protein_coding stop - - 5117.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - -2.0 PRINCIPAL:1 ENSMUSG00000031163 Glod5 ENSMUST00000033503 ENSMUSP00000033503 TRANSLATION protein_coding - CCDS29982.1 1 148.0 3.0 3.0 0.1 35.0 0.0 -4,-5 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000079428 Tceal7 ENSMUST00000126811 ENSMUSP00000122260 TRANSLATION protein_coding stop - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079428 Tceal7 ENSMUST00000113116 ENSMUSP00000108741 TRANSLATION protein_coding - CCDS53193.1 1 98.0 0.0 0.198 9.2 78.8 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000090132 Cypt2 ENSMUST00000249078 ENSMUSP00000159566 TRANSLATION protein_coding - - - 183.0 0.0 0.8 0.0 0.0 0.0 -4,-1 0.2089 - 6.0 ALTERNATIVE:2 ENSMUSG00000090132 Cypt2 ENSMUST00000041758 ENSMUSP00000132007 TRANSLATION protein_coding - CCDS30335.1 1 180.0 0.0 0.8 0.0 0.0 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000068113 Tesl1 ENSMUST00000116614 ENSMUSP00000112313 TRANSLATION protein_coding - CCDS53019.1 5 411.0 23.0 0.5 9.4 229.0 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000068113 Tesl1 ENSMUST00000163718 ENSMUSP00000136747 TRANSLATION protein_coding - CCDS53019.1 1 411.0 23.0 0.5 9.4 229.0 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000031264 Btk ENSMUST00000132664 - NO_TRANSLATION retained_intron ENSMUSG00000031264 Btk ENSMUST00000033617 ENSMUSP00000033617 TRANSLATION protein_coding - CCDS30396.1 1 659.0 36.0 15.25 20.1 542.7 0.0 -4,-7 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000031264 Btk ENSMUST00000128333 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031264 Btk ENSMUST00000113213 ENSMUSP00000108839 TRANSLATION protein_coding - - 5 483.0 22.0 11.75 1.0 372.1 0.0 -4,-7 0.0156 9 0.0 MINOR ENSMUSG00000031264 Btk ENSMUST00000150245 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031007 Atp6ap2 ENSMUST00000137277 - NO_TRANSLATION retained_intron ENSMUSG00000031007 Atp6ap2 ENSMUST00000033313 ENSMUSP00000033313 TRANSLATION protein_coding - CCDS30023.1 1 350.0 0.0 1.0 8.1 118.6 0.0 4,-1 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000002010 Idh3g ENSMUST00000156299 - NO_TRANSLATION retained_intron ENSMUSG00000002010 Idh3g ENSMUST00000130119 - NO_TRANSLATION retained_intron ENSMUSG00000002010 Idh3g ENSMUST00000129070 - NO_TRANSLATION retained_intron ENSMUSG00000002010 Idh3g ENSMUST00000052761 ENSMUSP00000056502 TRANSLATION protein_coding - CCDS30212.1 1 393.0 31.0 9.5 12.5 244.6 0.0 -4,-7 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000002010 Idh3g ENSMUST00000145341 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002010 Idh3g ENSMUST00000142707 - NO_TRANSLATION retained_intron ENSMUSG00000002010 Idh3g ENSMUST00000129367 - NO_TRANSLATION retained_intron ENSMUSG00000002010 Idh3g ENSMUST00000140944 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002010 Idh3g ENSMUST00000148419 - NO_TRANSLATION retained_intron ENSMUSG00000041020 Map7d2 ENSMUST00000043151 ENSMUSP00000046693 TRANSLATION protein_coding - CCDS85824.1 1 597.0 0.0 1.0 0.0 153.4 0.0 -4,-7 1.0 16 8.0 PRINCIPAL:2 ENSMUSG00000041020 Map7d2 ENSMUST00000112471 ENSMUSP00000108090 TRANSLATION protein_coding - CCDS41193.1 5 781.0 0.0 1.0 0.0 153.4 0.0 -4,-5 0.4423 17 8.0 ALTERNATIVE:2 ENSMUSG00000041020 Map7d2 ENSMUST00000156172 ENSMUSP00000119132 TRANSLATION protein_coding stop - 1 74.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 2 -2.0 MINOR ENSMUSG00000041020 Map7d2 ENSMUST00000145142 ENSMUSP00000122106 TRANSLATION protein_coding stop - 1 402.0 0.0 0.5 0.0 110.3 0.0 -4,-7 0.0 12 -2.0 MINOR ENSMUSG00000041020 Map7d2 ENSMUST00000112470 ENSMUSP00000108089 TRANSLATION protein_coding - CCDS85823.1 1 296.0 0.0 0.0 0.0 61.1 0.0 -4,-7 0.0355 11 0.0 MINOR ENSMUSG00000059203 Il1rapl2 ENSMUST00000113063 ENSMUSP00000108686 TRANSLATION protein_coding - CCDS30429.1 1 686.0 0.0 7.48 24.9 172.9 1.0 1,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000059203 Il1rapl2 ENSMUST00000130879 - NO_TRANSLATION retained_intron ENSMUSG00000059203 Il1rapl2 ENSMUST00000075471 ENSMUSP00000074917 TRANSLATION protein_coding - CCDS30429.1 5 686.0 0.0 7.48 24.9 172.9 1.0 1,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000016239 Lonrf3 ENSMUST00000016383 ENSMUSP00000016383 TRANSLATION protein_coding - CCDS30059.1 1 753.0 16.0 7.832 0.1 124.3 0.0 -4,-5 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000016239 Lonrf3 ENSMUST00000126147 ENSMUSP00000118175 TRANSLATION protein_coding start/stop - 3 238.0 0.0 2.366 0.0 0.0 0.0 -1,3 0.0007 1 -2.0 MINOR ENSMUSG00000016239 Lonrf3 ENSMUST00000135758 - NO_TRANSLATION retained_intron ENSMUSG00000095814 Btbd35f7 ENSMUST00000105007 ENSMUSP00000100624 TRANSLATION protein_coding - CCDS40836.1 - 498.0 0.0 0.8 5.4 38.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000121529 ENSMUSG00000121529 ENSMUST00000249154 ENSMUSP00000159601 TRANSLATION protein_coding - - - 7581.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - 0.0 PRINCIPAL:1 ENSMUSG00000036537 Rnf113a1 ENSMUST00000046433 ENSMUSP00000042569 TRANSLATION protein_coding - CCDS30072.1 - 341.0 12.0 0.5 9.2 67.1 0.0 -4,-6 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000031431 Tsc22d3 ENSMUST00000055738 ENSMUSP00000062589 TRANSLATION protein_coding - CCDS30440.1 1 137.0 0.0 1.5 19.0 97.0 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031431 Tsc22d3 ENSMUST00000112996 ENSMUSP00000108620 TRANSLATION protein_coding - CCDS41150.1 1 201.0 0.0 1.5 14.0 97.0 0.0 -4,-5 0.8649 7 14.888 MINOR ENSMUSG00000031431 Tsc22d3 ENSMUST00000123898 ENSMUSP00000123569 TRANSLATION protein_coding - - 5 113.0 0.0 1.5 4.0 97.0 0.0 -4,-6 0.1713 1 12.668 MINOR ENSMUSG00000031431 Tsc22d3 ENSMUST00000112995 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031431 Tsc22d3 ENSMUST00000152048 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031431 Tsc22d3 ENSMUST00000133023 - NO_TRANSLATION retained_intron ENSMUSG00000048155 H2bw2 ENSMUST00000059808 ENSMUSP00000055261 TRANSLATION protein_coding - CCDS53196.1 - 224.0 0.0 0.8 0.0 91.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049191 Rtl5 ENSMUST00000188731 ENSMUSP00000139504 TRANSLATION protein_coding - CCDS30320.1 1 599.0 0.0 0.5 0.1 44.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049191 Rtl5 ENSMUST00000113631 ENSMUSP00000109261 TRANSLATION protein_coding - CCDS30320.1 - 599.0 0.0 0.5 0.1 44.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049191 Rtl5 ENSMUST00000139878 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049191 Rtl5 ENSMUST00000119076 ENSMUSP00000133001 TRANSLATION nonsense_mediated_decay - CCDS30320.1 1 599.0 0.0 0.5 0.1 44.1 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000016319 Slc25a5 ENSMUST00000126608 - NO_TRANSLATION retained_intron ENSMUSG00000016319 Slc25a5 ENSMUST00000016463 ENSMUSP00000016463 TRANSLATION protein_coding - CCDS30062.1 1 298.0 46.0 4.0 36.9 226.8 0.0 -4,-6 1.0 12 22.0 PRINCIPAL:1 ENSMUSG00000016319 Slc25a5 ENSMUST00000156672 - NO_TRANSLATION retained_intron ENSMUSG00000025525 Apool ENSMUST00000113415 ENSMUSP00000109042 TRANSLATION protein_coding - CCDS85799.1 5 192.0 0.0 3.3 0.0 112.1 0.0 -4,-6 0.0091 10 9.36 MINOR ENSMUSG00000025525 Apool ENSMUST00000154378 - NO_TRANSLATION retained_intron ENSMUSG00000025525 Apool ENSMUST00000026599 ENSMUSP00000026599 TRANSLATION protein_coding - CCDS30359.1 1 265.0 0.0 4.3 5.7 122.8 0.0 -4,-2 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000091863 Cldn34a ENSMUST00000164764 ENSMUSP00000128513 TRANSLATION protein_coding - CCDS53225.1 - 211.0 0.0 0.6 1.1 0.0 3.0 -4,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000091863 Cldn34a ENSMUST00000238455 ENSMUSP00000158756 TRANSLATION protein_coding - CCDS53225.1 - 211.0 0.0 0.6 1.1 0.0 3.0 -4,-2 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000049929 Lpar4 ENSMUST00000060576 ENSMUSP00000053986 TRANSLATION protein_coding - CCDS30345.1 1 370.0 0.0 1.0 9.2 158.9 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000094577 Samt1b ENSMUST00000179369 ENSMUSP00000136221 TRANSLATION protein_coding - CCDS53228.1 5 237.0 0.0 1.0 0.1 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000118465 Btbd35f19 ENSMUST00000238426 ENSMUSP00000158776 TRANSLATION protein_coding - - - 498.0 0.0 0.8 5.4 41.2 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000035454 Samt3 ENSMUST00000047945 ENSMUSP00000036724 TRANSLATION protein_coding - CCDS30259.1 1 233.0 0.0 1.0 0.4 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000079702 Ssxb6 ENSMUST00000138642 ENSMUSP00000121642 TRANSLATION protein_coding - CCDS81099.1 1 170.0 0.0 1.8 0.0 80.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000002012 Pnck ENSMUST00000129106 - NO_TRANSLATION retained_intron ENSMUSG00000002012 Pnck ENSMUST00000002087 ENSMUSP00000002087 TRANSLATION protein_coding - CCDS30207.1 1 343.0 18.0 8.05 8.6 254.6 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000002012 Pnck ENSMUST00000114473 ENSMUSP00000110117 TRANSLATION protein_coding - CCDS30207.1 1 343.0 18.0 8.05 8.6 254.6 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000002012 Pnck ENSMUST00000114472 ENSMUSP00000110116 TRANSLATION protein_coding - CCDS30207.1 1 343.0 18.0 8.05 8.6 254.6 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000002012 Pnck ENSMUST00000144187 ENSMUSP00000120453 TRANSLATION protein_coding stop - 2 227.0 18.0 5.85 0.0 212.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031107 Rbmx2 ENSMUST00000033433 ENSMUSP00000033433 TRANSLATION protein_coding - CCDS30114.1 1 326.0 0.0 3.5 2.7 72.2 0.0 -4,-5 1.0 3 13.0 PRINCIPAL:1 ENSMUSG00000031107 Rbmx2 ENSMUST00000139150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079387 Luzp4 ENSMUST00000163338 ENSMUSP00000126473 TRANSLATION protein_coding - CCDS53213.1 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:2 ENSMUSG00000079387 Luzp4 ENSMUST00000101185 ENSMUSP00000098745 TRANSLATION protein_coding - - 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6074 - 0.0 ALTERNATIVE:2 ENSMUSG00000095546 Gm10230 ENSMUST00000119362 ENSMUSP00000114126 TRANSLATION protein_coding - CCDS53029.1 1 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095546 Gm10230 ENSMUST00000178745 ENSMUSP00000136764 TRANSLATION protein_coding - CCDS53029.1 5 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000118459 Btbd35f1 ENSMUST00000238237 ENSMUSP00000158585 TRANSLATION protein_coding - CCDS40910.1 - 498.0 0.0 0.8 5.4 40.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000037347 Chst7 ENSMUST00000044138 ENSMUSP00000043222 TRANSLATION protein_coding - CCDS30040.1 1 484.0 9.0 0.25 9.9 68.0 0.0 -2,-5 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000067878 Map7d3 ENSMUST00000114766 ENSMUSP00000110414 TRANSLATION protein_coding - CCDS40982.1 1 876.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.9288 1 0.0 PRINCIPAL:1 ENSMUSG00000067878 Map7d3 ENSMUST00000135542 ENSMUSP00000115069 TRANSLATION protein_coding stop - 1 489.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0667 - -2.0 MINOR ENSMUSG00000035277 Arx ENSMUST00000113947 ENSMUSP00000109580 TRANSLATION protein_coding - CCDS30271.1 1 564.0 0.0 0.7 5.6 119.3 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000035277 Arx ENSMUST00000046565 ENSMUSP00000049039 TRANSLATION protein_coding - CCDS30271.1 1 564.0 0.0 0.7 5.6 119.3 0.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000035277 Arx ENSMUST00000187010 - NO_TRANSLATION retained_intron ENSMUSG00000025289 Prdx4 ENSMUST00000026328 ENSMUSP00000026328 TRANSLATION protein_coding - CCDS30496.1 1 274.0 0.0 4.83 2.4 165.2 0.0 -2,-5 1.0 10 13.0 PRINCIPAL:1 ENSMUSG00000025289 Prdx4 ENSMUST00000130349 ENSMUSP00000122997 TRANSLATION protein_coding stop - 3 229.0 0.0 4.0 0.0 118.0 0.0 -4,0 0.0005 7 -2.0 MINOR ENSMUSG00000025289 Prdx4 ENSMUST00000123915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051038 Rhox11 ENSMUST00000054147 ENSMUSP00000052929 TRANSLATION protein_coding - CCDS30086.1 1 206.0 0.0 1.5 0.0 57.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055653 Gpc3 ENSMUST00000114857 ENSMUSP00000110507 TRANSLATION protein_coding - - 1 430.0 0.0 1.5 0.0 516.1 0.0 4,-1 0.0064 1 6.096 MINOR ENSMUSG00000055653 Gpc3 ENSMUST00000069360 ENSMUSP00000064131 TRANSLATION protein_coding - CCDS30125.1 1 579.0 0.0 1.78 11.8 598.8 0.0 4,-1 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000018589 Glra2 ENSMUST00000058787 ENSMUSP00000060827 TRANSLATION protein_coding - CCDS41206.1 1 452.0 0.0 6.5 31.9 297.6 0.0 0,-3 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000031158 Timm17b ENSMUST00000033498 ENSMUSP00000033498 TRANSLATION protein_coding - CCDS29978.1 1 172.0 0.0 4.33 36.9 99.6 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000031158 Timm17b ENSMUST00000146406 ENSMUSP00000117340 TRANSLATION protein_coding start/stop - 3 146.0 0.0 3.25 0.0 99.6 0.0 -4,-7 0.0054 3 -2.0 MINOR ENSMUSG00000031158 Timm17b ENSMUST00000150541 - NO_TRANSLATION retained_intron ENSMUSG00000031397 Tktl1 ENSMUST00000156959 ENSMUSP00000117388 TRANSLATION nonsense_mediated_decay - - 5 126.0 0.0 2.55 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031397 Tktl1 ENSMUST00000010127 ENSMUSP00000010127 TRANSLATION protein_coding - CCDS30221.1 1 595.0 4.0 13.05 5.8 252.2 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000083695 Rnf138rt1 ENSMUST00000059320 ENSMUSP00000139291 TRANSLATION protein_coding - CCDS72464.1 - 248.0 16.0 0.3 9.6 97.5 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000036769 Wdr44 ENSMUST00000149483 ENSMUSP00000116260 TRANSLATION nonsense_mediated_decay - - 1 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036769 Wdr44 ENSMUST00000135445 - NO_TRANSLATION retained_intron ENSMUSG00000036769 Wdr44 ENSMUST00000101670 ENSMUSP00000099193 TRANSLATION protein_coding - CCDS40892.1 1 915.0 0.0 4.45 10.2 76.2 0.0 -4,-5 1.0 27 15.0 PRINCIPAL:1 ENSMUSG00000036769 Wdr44 ENSMUST00000035766 ENSMUSP00000044616 TRANSLATION protein_coding - CCDS40892.1 1 915.0 0.0 4.45 10.2 76.2 0.0 -4,-5 1.0 27 15.0 PRINCIPAL:1 ENSMUSG00000036769 Wdr44 ENSMUST00000142600 - NO_TRANSLATION retained_intron ENSMUSG00000059493 Nhs ENSMUST00000081569 ENSMUSP00000080280 TRANSLATION protein_coding - CCDS41201.1 1 1626.0 0.0 0.2 1.1 713.7 0.0 -4,-7 1.0 11 7.0 PRINCIPAL:2 ENSMUSG00000059493 Nhs ENSMUST00000087085 ENSMUSP00000084319 TRANSLATION protein_coding - CCDS72461.1 1 1647.0 0.0 0.2 1.1 713.7 0.0 -4,-7 0.6887 11 7.0 ALTERNATIVE:2 ENSMUSG00000086316 Nbdy ENSMUST00000185492 ENSMUSP00000144860 TRANSLATION protein_coding - - 1 68.0 0.0 0.0 8.3 0.0 0.0 -4,-5 1.0 1 3.0 MINOR ENSMUSG00000086316 Nbdy ENSMUST00000140575 ENSMUSP00000144699 TRANSLATION protein_coding - - 1 68.0 0.0 0.0 8.3 0.0 0.0 -4,-5 1.0 1 3.0 MINOR ENSMUSG00000086316 Nbdy ENSMUST00000149514 ENSMUSP00000145010 TRANSLATION protein_coding - - 2 68.0 0.0 0.0 8.3 0.0 0.0 -4,-5 1.0 1 3.0 MINOR ENSMUSG00000086316 Nbdy ENSMUST00000155617 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000086316 Nbdy ENSMUST00000208235 ENSMUSP00000147221 TRANSLATION protein_coding - CCDS85820.1 2 43.0 0.0 0.95 0.0 0.0 0.0 -4,-6 0.8085 - 6.0 PRINCIPAL:1 ENSMUSG00000086316 Nbdy ENSMUST00000208373 ENSMUSP00000146758 TRANSLATION protein_coding - - 5 68.0 0.0 0.0 8.3 0.0 0.0 -4,-5 1.0 1 3.0 MINOR ENSMUSG00000031226 Pbdc1 ENSMUST00000125343 - NO_TRANSLATION retained_intron ENSMUSG00000031226 Pbdc1 ENSMUST00000033577 ENSMUSP00000033577 TRANSLATION protein_coding - CCDS30334.1 1 198.0 0.0 3.55 0.1 73.1 0.0 -4,-5 1.0 6 12.0 PRINCIPAL:1 ENSMUSG00000031226 Pbdc1 ENSMUST00000119477 ENSMUSP00000113288 TRANSLATION protein_coding - CCDS72419.1 1 137.0 0.0 2.75 0.0 55.8 0.0 -4,-5 0.0036 4 8.976 MINOR ENSMUSG00000046699 Slitrk4 ENSMUST00000114679 ENSMUSP00000110327 TRANSLATION protein_coding - CCDS30167.1 1 837.0 0.0 0.8 25.7 101.4 1.0 4,-1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000046699 Slitrk4 ENSMUST00000069926 ENSMUSP00000064443 TRANSLATION protein_coding - CCDS30167.1 1 837.0 0.0 0.8 25.7 101.4 1.0 4,-1 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000046699 Slitrk4 ENSMUST00000156121 ENSMUSP00000122648 TRANSLATION protein_coding stop - 2 110.0 0.0 0.6 0.0 0.0 0.0 4,-1 0.0008 1 -2.0 MINOR ENSMUSG00000049804 Armcx4 ENSMUST00000124226 ENSMUSP00000132914 TRANSLATION protein_coding - CCDS57773.1 2 2356.0 0.0 0.0 0.0 288.5 0.0 -3,-6 1.0 18 6.0 PRINCIPAL:1 ENSMUSG00000033361 Prrg3 ENSMUST00000170096 ENSMUSP00000128073 TRANSLATION protein_coding - CCDS41001.1 1 231.0 12.0 0.8 9.4 70.7 1.0 -4,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000033361 Prrg3 ENSMUST00000126362 ENSMUSP00000118155 TRANSLATION protein_coding stop - 2 52.0 12.0 0.8 0.0 48.8 0.0 -4,-7 0.0199 - -2.0 MINOR ENSMUSG00000033361 Prrg3 ENSMUST00000048790 ENSMUSP00000038947 TRANSLATION protein_coding - CCDS41001.1 1 231.0 12.0 0.8 9.4 70.7 1.0 -4,-7 1.0 2 21.0 PRINCIPAL:1 ENSMUSG00000060090 Rp2 ENSMUST00000033372 ENSMUSP00000033372 TRANSLATION protein_coding - CCDS30041.1 1 347.0 0.0 3.83 12.3 177.8 0.0 -4,-5 1.0 10 11.424 PRINCIPAL:3 ENSMUSG00000060090 Rp2 ENSMUST00000115391 ENSMUSP00000111049 TRANSLATION protein_coding - CCDS30041.1 1 347.0 0.0 3.83 12.3 177.8 0.0 -4,-5 1.0 10 11.424 PRINCIPAL:3 ENSMUSG00000060090 Rp2 ENSMUST00000115387 ENSMUSP00000111045 TRANSLATION protein_coding - CCDS72346.1 1 310.0 0.0 3.5 14.2 177.8 0.0 -4,-5 0.9337 7 11.34 ALTERNATIVE:1 ENSMUSG00000060090 Rp2 ENSMUST00000133619 ENSMUSP00000138724 TRANSLATION nonsense_mediated_decay - - 1 322.0 0.0 3.08 0.0 177.8 0.0 -4,-5 0.0031 10 -2.0 MINOR ENSMUSG00000060090 Rp2 ENSMUST00000134349 ENSMUSP00000138352 TRANSLATION nonsense_mediated_decay - - 1 369.0 0.0 3.08 0.0 177.8 0.0 -4,-5 0.0055 10 -2.0 MINOR ENSMUSG00000051159 Cited1 ENSMUST00000134887 ENSMUSP00000117702 TRANSLATION protein_coding stop - 5 118.0 0.0 0.0 0.0 24.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000051159 Cited1 ENSMUST00000130589 ENSMUSP00000119123 TRANSLATION protein_coding stop - 3 110.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000051159 Cited1 ENSMUST00000101336 ENSMUSP00000098890 TRANSLATION protein_coding - CCDS30322.1 1 203.0 0.0 0.6 7.1 108.2 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000051159 Cited1 ENSMUST00000050551 ENSMUSP00000051789 TRANSLATION protein_coding - CCDS30322.1 1 203.0 0.0 0.6 7.1 108.2 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000051159 Cited1 ENSMUST00000136277 ENSMUSP00000114269 TRANSLATION protein_coding stop - 5 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000059708 Akap17b ENSMUST00000051906 ENSMUSP00000052042 TRANSLATION protein_coding - CCDS40924.1 5 959.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.9474 - 0.0 PRINCIPAL:1 ENSMUSG00000059708 Akap17b ENSMUST00000133980 ENSMUSP00000123406 TRANSLATION protein_coding stop - 1 406.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0488 - -2.0 MINOR ENSMUSG00000031101 Sash3 ENSMUST00000033427 ENSMUSP00000033427 TRANSLATION protein_coding - CCDS40959.1 1 380.0 0.0 2.4 11.0 220.8 0.0 -4,-7 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000073243 Gm9 ENSMUST00000101636 ENSMUSP00000099160 TRANSLATION protein_coding - CCDS30073.1 1 162.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8672 - 0.0 PRINCIPAL:1 ENSMUSG00000039521 Foxp3 ENSMUST00000234896 ENSMUSP00000157243 TRANSLATION protein_coding stop - - 54.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000039521 Foxp3 ENSMUST00000045566 ENSMUSP00000041953 TRANSLATION protein_coding - CCDS29965.1 5 429.0 4.0 5.3 6.6 183.1 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039521 Foxp3 ENSMUST00000115739 ENSMUSP00000111404 TRANSLATION protein_coding - CCDS29965.1 1 429.0 4.0 5.3 6.6 183.1 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039521 Foxp3 ENSMUST00000235116 ENSMUSP00000157059 TRANSLATION protein_coding - CCDS29965.1 - 429.0 4.0 5.3 6.6 183.1 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039521 Foxp3 ENSMUST00000115740 ENSMUSP00000111405 TRANSLATION protein_coding - CCDS29965.1 1 429.0 4.0 5.3 6.6 183.1 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039521 Foxp3 ENSMUST00000234363 ENSMUSP00000157093 TRANSLATION protein_coding - CCDS29965.1 - 429.0 4.0 5.3 6.6 183.1 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000039521 Foxp3 ENSMUST00000234479 ENSMUSP00000157242 TRANSLATION nonsense_mediated_decay - - - 335.0 4.0 2.3 0.0 92.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000039521 Foxp3 ENSMUST00000234015 ENSMUSP00000157266 TRANSLATION protein_coding - - - 402.0 4.0 4.55 0.0 156.7 0.0 -4,-7 0.0083 - 12.916 MINOR ENSMUSG00000039521 Foxp3 ENSMUST00000234574 ENSMUSP00000157007 TRANSLATION protein_coding - - - 394.0 4.0 5.3 2.0 183.1 0.0 -4,-7 0.241 - 16.358 MINOR ENSMUSG00000039521 Foxp3 ENSMUST00000115738 ENSMUSP00000111403 TRANSLATION protein_coding - CCDS29965.1 1 429.0 4.0 5.3 6.6 183.1 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000023443 Esx1 ENSMUST00000074698 ENSMUSP00000074262 TRANSLATION protein_coding - CCDS53199.1 1 382.0 0.0 1.5 0.0 77.4 0.0 -4,-5 0.3977 - 8.0 ALTERNATIVE:2 ENSMUSG00000023443 Esx1 ENSMUST00000155283 ENSMUSP00000133711 TRANSLATION protein_coding stop - 3 99.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000023443 Esx1 ENSMUST00000113066 ENSMUSP00000108689 TRANSLATION protein_coding - - 1 314.0 0.0 1.5 0.0 77.4 0.0 -4,-5 0.781 - 8.0 PRINCIPAL:2 ENSMUSG00000031367 Ap1s2 ENSMUST00000140845 ENSMUSP00000114902 TRANSLATION protein_coding start - 5 132.0 0.0 3.2 0.0 164.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031367 Ap1s2 ENSMUST00000033734 ENSMUSP00000033734 TRANSLATION protein_coding - CCDS72466.1 1 157.0 0.0 4.25 36.9 202.5 0.0 -4,-1 0.968 3 12.0 ALTERNATIVE:1 ENSMUSG00000031367 Ap1s2 ENSMUST00000112294 ENSMUSP00000107913 TRANSLATION protein_coding - CCDS30514.1 1 160.0 0.0 3.75 6.6 202.5 0.0 -4,-1 0.5128 3 7.622 MINOR ENSMUSG00000031367 Ap1s2 ENSMUST00000069041 ENSMUSP00000066185 TRANSLATION protein_coding - CCDS72465.1 1 160.0 0.0 4.25 36.9 202.5 0.0 -4,-1 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000031221 Igbp1 ENSMUST00000033570 ENSMUSP00000033570 TRANSLATION protein_coding - CCDS30302.1 1 340.0 0.0 2.2 8.8 292.0 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000031221 Igbp1 ENSMUST00000144881 - NO_TRANSLATION retained_intron ENSMUSG00000095474 Cldn34c2 ENSMUST00000238499 ENSMUSP00000158666 TRANSLATION protein_coding - - - 212.0 0.0 0.5 0.1 0.0 0.0 -2,0 0.6949 - 6.0 PRINCIPAL:1 ENSMUSG00000031386 Hcfc1 ENSMUST00000128325 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031386 Hcfc1 ENSMUST00000156204 - NO_TRANSLATION retained_intron ENSMUSG00000031386 Hcfc1 ENSMUST00000128136 ENSMUSP00000115792 TRANSLATION protein_coding start - 5 612.0 0.0 2.214 0.0 0.0 0.0 -4,-5 0.0013 13 -2.0 MINOR ENSMUSG00000031386 Hcfc1 ENSMUST00000114372 ENSMUSP00000110012 TRANSLATION protein_coding - - 5 2090.0 0.0 5.184 1.1 50.5 0.0 -4,-2 0.3838 40 9.0 ALTERNATIVE:2 ENSMUSG00000031386 Hcfc1 ENSMUST00000131091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031386 Hcfc1 ENSMUST00000033761 ENSMUSP00000033761 TRANSLATION protein_coding - CCDS30218.1 1 2045.0 0.0 5.184 1.1 50.5 0.0 -4,-2 1.0 41 9.0 PRINCIPAL:2 ENSMUSG00000025058 Tasl ENSMUST00000113976 ENSMUSP00000109609 TRANSLATION protein_coding - CCDS53127.1 1 298.0 0.0 0.0 11.4 348.4 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000046032 Snx12 ENSMUST00000120389 ENSMUSP00000113117 TRANSLATION protein_coding - CCDS53151.1 1 162.0 0.0 4.0 36.9 94.2 0.0 -4,-5 1.0 5 15.472 PRINCIPAL:1 ENSMUSG00000046032 Snx12 ENSMUST00000130826 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046032 Snx12 ENSMUST00000077876 ENSMUSP00000077038 TRANSLATION protein_coding - CCDS41076.1 1 166.0 0.0 4.264 3.4 94.2 0.0 -4,-5 0.4127 5 12.268 MINOR ENSMUSG00000046032 Snx12 ENSMUST00000156473 ENSMUSP00000119102 TRANSLATION protein_coding - CCDS53152.1 1 170.0 0.0 4.198 0.1 94.2 0.0 -4,-5 0.1183 5 11.868 MINOR ENSMUSG00000031242 Chmp1b2 ENSMUST00000120722 ENSMUSP00000113588 TRANSLATION protein_coding - CCDS53171.1 1 199.0 0.0 4.705 34.9 57.4 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031242 Chmp1b2 ENSMUST00000191183 - NO_TRANSLATION retained_intron ENSMUSG00000061065 H2al1o ENSMUST00000079952 ENSMUSP00000078870 TRANSLATION protein_coding - CCDS52998.1 - 110.0 0.0 1.0 0.0 33.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067924 Rtl8b ENSMUST00000088778 ENSMUSP00000086157 TRANSLATION protein_coding - CCDS30135.1 - 113.0 0.0 1.0 1.8 182.9 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000121606 AKAP17A ENSMUST00000249667 ENSMUSP00000159846 TRANSLATION protein_coding - - - 717.0 0.0 0.0 0.0 0.0 0.0 -,- 0.6432 8 0.0 PRINCIPAL:1 ENSMUSG00000121606 AKAP17A ENSMUST00000249666 ENSMUSP00000159845 TRANSLATION protein_coding - - - 717.0 0.0 0.0 0.0 0.0 0.0 -,- 0.6432 8 0.0 PRINCIPAL:1 ENSMUSG00000031295 Phka2 ENSMUST00000112380 ENSMUSP00000107999 TRANSLATION protein_coding - CCDS53237.1 1 1191.0 3.0 12.4 0.0 655.0 0.0 -4,-1 0.3537 15 14.598 MINOR ENSMUSG00000031295 Phka2 ENSMUST00000033652 ENSMUSP00000033652 TRANSLATION protein_coding - CCDS30504.1 1 1235.0 3.0 12.4 14.9 655.0 0.0 -4,-1 1.0 16 18.598 PRINCIPAL:1 ENSMUSG00000031295 Phka2 ENSMUST00000146752 - NO_TRANSLATION retained_intron ENSMUSG00000031295 Phka2 ENSMUST00000112377 ENSMUSP00000107996 TRANSLATION protein_coding - CCDS30504.1 1 1235.0 3.0 12.4 14.9 655.0 0.0 -4,-1 1.0 16 18.598 PRINCIPAL:1 ENSMUSG00000031295 Phka2 ENSMUST00000112376 ENSMUSP00000107995 TRANSLATION protein_coding - - 1 537.0 3.0 12.6 0.0 518.3 0.0 -4,-1 0.0616 6 9.0 MINOR ENSMUSG00000031295 Phka2 ENSMUST00000131765 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031295 Phka2 ENSMUST00000139496 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031295 Phka2 ENSMUST00000154142 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031295 Phka2 ENSMUST00000139587 ENSMUSP00000118575 TRANSLATION protein_coding stop - 3 94.0 0.0 1.65 0.0 119.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000031295 Phka2 ENSMUST00000153907 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025656 Arhgef9 ENSMUST00000113884 ENSMUSP00000109516 TRANSLATION protein_coding - - 5 560.0 0.0 11.93 0.0 228.4 0.0 -4,-7 0.0263 9 8.0 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000182001 ENSMUSP00000138668 TRANSLATION protein_coding - CCDS72409.1 1 495.0 0.0 11.43 18.9 224.3 0.0 -4,-5 0.9515 9 10.332 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000198753 ENSMUSP00000142911 TRANSLATION protein_coding stop - 5 236.0 0.0 6.35 0.0 153.7 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000113885 ENSMUSP00000109517 TRANSLATION protein_coding - - 5 515.0 0.0 11.93 0.0 228.4 0.0 -4,-7 0.2682 9 8.0 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000181987 ENSMUSP00000138461 TRANSLATION protein_coding - - 2 496.0 0.0 11.93 0.0 228.4 0.0 -4,-7 0.0388 8 8.0 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000182135 ENSMUSP00000143184 TRANSLATION protein_coding start - 5 42.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000196012 ENSMUSP00000143373 TRANSLATION protein_coding stop - 5 68.0 0.0 1.5 0.0 44.3 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000182562 ENSMUSP00000138147 TRANSLATION protein_coding stop - 3 54.0 0.0 1.5 0.0 44.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000113882 ENSMUSP00000109514 TRANSLATION protein_coding - - 5 516.0 0.0 11.93 17.8 228.4 0.0 -4,-7 0.8681 9 11.756 ALTERNATIVE:1 ENSMUSG00000025656 Arhgef9 ENSMUST00000200628 ENSMUSP00000142905 TRANSLATION protein_coding stop - 5 219.0 0.0 5.6 0.0 133.3 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000197364 ENSMUSP00000142615 TRANSLATION protein_coding - - 5 442.0 0.0 11.18 0.0 228.4 0.0 -4,-7 0.0144 7 6.5 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000199920 ENSMUSP00000143779 TRANSLATION protein_coding - CCDS72409.1 5 495.0 0.0 11.43 18.9 224.3 0.0 -4,-5 0.9515 9 10.332 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000113878 ENSMUSP00000109510 TRANSLATION protein_coding - CCDS53137.1 1 516.0 0.0 11.93 17.8 228.4 0.0 -4,-5 1.0 9 11.756 PRINCIPAL:4 ENSMUSG00000025656 Arhgef9 ENSMUST00000113873 ENSMUSP00000109505 TRANSLATION protein_coding - - 5 414.0 0.0 9.83 6.5 184.1 0.0 -4,-5 0.1437 9 4.028 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000197206 ENSMUSP00000142769 TRANSLATION protein_coding - - 5 463.0 0.0 10.43 3.2 184.1 0.0 -4,-5 0.0488 9 4.492 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000113883 ENSMUSP00000109515 TRANSLATION protein_coding - - 5 516.0 0.0 11.93 17.8 228.4 0.0 -4,-7 0.8681 9 11.756 ALTERNATIVE:1 ENSMUSG00000025656 Arhgef9 ENSMUST00000196354 ENSMUSP00000143086 TRANSLATION protein_coding start - 5 258.0 0.0 5.58 0.0 56.7 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000113876 ENSMUSP00000109508 TRANSLATION protein_coding - CCDS72409.1 1 495.0 0.0 11.43 18.9 224.3 0.0 -4,-5 0.9515 9 10.332 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000128565 ENSMUSP00000138258 TRANSLATION protein_coding - - 5 411.0 0.0 10.43 0.1 184.1 0.0 -4,-5 0.0011 8 4.0 MINOR ENSMUSG00000025656 Arhgef9 ENSMUST00000182137 ENSMUSP00000138243 TRANSLATION protein_coding start - 3 108.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031302 Nlgn3 ENSMUST00000144860 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031302 Nlgn3 ENSMUST00000065858 ENSMUSP00000066304 TRANSLATION protein_coding - CCDS30313.1 1 825.0 2.0 5.82 10.5 653.2 2.0 1,-4 1.0 12 15.539 MINOR ENSMUSG00000031302 Nlgn3 ENSMUST00000147443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031302 Nlgn3 ENSMUST00000130555 ENSMUSP00000122213 TRANSLATION protein_coding stop - 5 510.0 2.0 5.0 0.0 588.9 0.0 1,-4 0.0088 8 -2.0 MINOR ENSMUSG00000031302 Nlgn3 ENSMUST00000151528 ENSMUSP00000123283 TRANSLATION protein_coding - - 5 845.0 2.0 6.42 11.4 650.0 2.0 1,-4 0.8758 12 16.808 PRINCIPAL:1 ENSMUSG00000031302 Nlgn3 ENSMUST00000118111 ENSMUSP00000113863 TRANSLATION protein_coding - - 5 711.0 2.0 4.82 1.7 553.0 2.0 -4,-7 0.0487 10 5.003 MINOR ENSMUSG00000034160 Ogt ENSMUST00000044475 ENSMUSP00000045409 TRANSLATION protein_coding - CCDS30318.1 1 1046.0 2.0 19.665 32.4 1087.3 0.0 -4,-6 1.0 30 18.0 PRINCIPAL:1 ENSMUSG00000034160 Ogt ENSMUST00000153979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034160 Ogt ENSMUST00000119299 ENSMUSP00000113454 TRANSLATION protein_coding - CCDS72415.1 5 1036.0 2.0 19.665 0.0 1087.3 0.0 -4,-5 0.4239 29 14.0 MINOR ENSMUSG00000034160 Ogt ENSMUST00000147635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034160 Ogt ENSMUST00000155713 - NO_TRANSLATION retained_intron ENSMUSG00000034160 Ogt ENSMUST00000150161 - NO_TRANSLATION retained_intron ENSMUSG00000034160 Ogt ENSMUST00000155792 - NO_TRANSLATION retained_intron ENSMUSG00000059327 Eda ENSMUST00000113779 ENSMUSP00000109409 TRANSLATION protein_coding - CCDS30299.1 1 391.0 0.0 3.08 11.0 33.3 1.0 -4,-7 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000059327 Eda ENSMUST00000113783 ENSMUSP00000109413 TRANSLATION protein_coding - - 5 383.0 0.0 3.08 6.8 33.3 1.0 -4,-7 0.6597 - 7.74 MINOR ENSMUSG00000059327 Eda ENSMUST00000071453 ENSMUSP00000071397 TRANSLATION protein_coding - CCDS53144.1 1 383.0 0.0 3.08 6.8 33.3 1.0 -4,-7 0.8131 - 7.74 MINOR ENSMUSG00000059327 Eda ENSMUST00000113781 ENSMUSP00000109411 TRANSLATION protein_coding - CCDS53145.1 1 378.0 0.0 3.08 6.8 35.7 1.0 -4,-7 0.832 - 7.74 MINOR ENSMUSG00000059327 Eda ENSMUST00000113777 ENSMUSP00000109407 TRANSLATION protein_coding - CCDS53142.1 5 351.0 0.0 2.08 0.1 0.0 1.0 -4,-7 0.0151 - 4.002 MINOR ENSMUSG00000059327 Eda ENSMUST00000113775 ENSMUSP00000109405 TRANSLATION protein_coding - CCDS53142.1 1 351.0 0.0 2.08 0.1 0.0 1.0 -4,-7 0.0151 - 4.002 MINOR ENSMUSG00000059327 Eda ENSMUST00000113776 ENSMUSP00000109406 TRANSLATION protein_coding - CCDS53142.1 1 351.0 0.0 2.08 0.1 0.0 1.0 -4,-7 0.0151 - 4.002 MINOR ENSMUSG00000059327 Eda ENSMUST00000145063 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059327 Eda ENSMUST00000134582 - NO_TRANSLATION retained_intron ENSMUSG00000059327 Eda ENSMUST00000123547 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059327 Eda ENSMUST00000113778 ENSMUSP00000109408 TRANSLATION protein_coding - CCDS53143.1 1 386.0 0.0 3.08 11.0 35.7 1.0 -4,-7 0.9795 - 9.0 ALTERNATIVE:1 ENSMUSG00000059327 Eda ENSMUST00000113780 ENSMUSP00000109410 TRANSLATION protein_coding - CCDS53141.1 1 377.0 0.0 2.58 2.7 0.0 1.0 -4,-7 0.148 - 5.508 MINOR ENSMUSG00000094876 Btbd35f18 ENSMUST00000105019 ENSMUSP00000100636 TRANSLATION protein_coding - CCDS52972.1 - 498.0 0.0 0.8 5.4 40.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044121 5430402E10Rik ENSMUST00000063127 ENSMUSP00000052804 TRANSLATION protein_coding - CCDS57766.1 1 173.0 0.0 4.125 0.4 85.7 0.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000005864 Cnga2 ENSMUST00000006020 ENSMUSP00000006020 TRANSLATION protein_coding - CCDS30184.1 1 664.0 13.0 4.1 0.0 251.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000005864 Cnga2 ENSMUST00000145642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078324 Btbd35f14 ENSMUST00000105117 ENSMUSP00000100749 TRANSLATION protein_coding - CCDS53046.1 - 498.0 0.0 0.8 5.4 41.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000000134 Tfe3 ENSMUST00000132209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000134 Tfe3 ENSMUST00000144715 - NO_TRANSLATION retained_intron ENSMUSG00000000134 Tfe3 ENSMUST00000133456 - NO_TRANSLATION retained_intron ENSMUSG00000000134 Tfe3 ENSMUST00000137467 ENSMUSP00000134125 TRANSLATION protein_coding - CCDS72332.1 1 467.0 0.0 2.25 1.3 311.6 0.0 -4,0 0.4533 3 12.088 MINOR ENSMUSG00000000134 Tfe3 ENSMUST00000143680 - NO_TRANSLATION retained_intron ENSMUSG00000000134 Tfe3 ENSMUST00000077680 ENSMUSP00000076864 TRANSLATION protein_coding - CCDS52984.1 1 572.0 0.0 2.25 7.8 311.6 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000000134 Tfe3 ENSMUST00000126694 - NO_TRANSLATION retained_intron ENSMUSG00000000134 Tfe3 ENSMUST00000115678 ENSMUSP00000111342 TRANSLATION protein_coding - CCDS72333.1 5 432.0 0.0 2.25 0.0 295.1 0.0 -4,0 0.1261 3 11.01 MINOR ENSMUSG00000000134 Tfe3 ENSMUST00000115679 ENSMUSP00000111343 TRANSLATION protein_coding - CCDS72332.1 1 467.0 0.0 2.25 1.3 311.6 0.0 -4,0 0.4533 3 12.088 MINOR ENSMUSG00000000134 Tfe3 ENSMUST00000144900 ENSMUSP00000120920 TRANSLATION protein_coding start/stop - 2 136.0 0.0 0.0 0.0 40.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000134 Tfe3 ENSMUST00000079542 ENSMUSP00000078498 TRANSLATION protein_coding - CCDS52985.1 1 537.0 0.0 2.25 0.1 295.1 0.0 -4,-5 0.1719 4 11.01 MINOR ENSMUSG00000000134 Tfe3 ENSMUST00000115677 ENSMUSP00000111341 TRANSLATION protein_coding - CCDS72332.1 1 467.0 0.0 2.25 1.3 311.6 0.0 -4,0 0.4533 3 12.088 MINOR ENSMUSG00000000134 Tfe3 ENSMUST00000101695 ENSMUSP00000099219 TRANSLATION protein_coding - CCDS72332.1 5 467.0 0.0 2.25 1.3 311.6 0.0 -4,0 0.4533 3 12.088 MINOR ENSMUSG00000000134 Tfe3 ENSMUST00000115680 ENSMUSP00000111344 TRANSLATION nonsense_mediated_decay - - 5 108.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000101818 Gm28269 ENSMUST00000189511 ENSMUSP00000141034 TRANSLATION protein_coding - - 3 125.0 0.0 0.0 0.0 0.0 0.0 0,-5 0.5901 - 0.0 PRINCIPAL:1 ENSMUSG00000054034 Tceal5 ENSMUST00000151592 ENSMUSP00000118630 TRANSLATION protein_coding stop - 3 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000054034 Tceal5 ENSMUST00000066819 ENSMUSP00000065397 TRANSLATION protein_coding - CCDS30416.1 1 200.0 0.0 0.0 3.3 134.7 0.0 -4,-5 1.0 3 7.0 PRINCIPAL:1 ENSMUSG00000054034 Tceal5 ENSMUST00000131510 ENSMUSP00000114653 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0003 1 -2.0 MINOR ENSMUSG00000099443 H2al1h ENSMUST00000177926 ENSMUSP00000136794 TRANSLATION protein_coding - CCDS57734.1 - 105.0 0.0 1.0 0.0 45.6 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045103 Dmd ENSMUST00000132333 - NO_TRANSLATION retained_intron ENSMUSG00000045103 Dmd ENSMUST00000114000 ENSMUSP00000109633 TRANSLATION protein_coding - CCDS41047.1 1 3678.0 4.0 18.3 4.7 1208.5 0.0 -4,-5 1.0 103 16.99 PRINCIPAL:1 ENSMUSG00000045103 Dmd ENSMUST00000149433 - NO_TRANSLATION retained_intron ENSMUSG00000045103 Dmd ENSMUST00000113992 ENSMUSP00000109625 TRANSLATION protein_coding - CCDS85788.1 1 604.0 4.0 5.85 7.6 344.5 0.0 -4,-5 0.3913 17 5.767 MINOR ENSMUSG00000045103 Dmd ENSMUST00000147740 - NO_TRANSLATION retained_intron ENSMUSG00000045103 Dmd ENSMUST00000128983 - NO_TRANSLATION retained_intron ENSMUSG00000045103 Dmd ENSMUST00000139998 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045103 Dmd ENSMUST00000141261 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045103 Dmd ENSMUST00000239269 ENSMUSP00000159246 TRANSLATION protein_coding - - - 2332.0 4.0 9.635 2.5 760.8 0.0 -4,-7 0.1374 67 4.402 MINOR ENSMUSG00000045103 Dmd ENSMUST00000156107 - NO_TRANSLATION retained_intron ENSMUSG00000045103 Dmd ENSMUST00000123308 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045103 Dmd ENSMUST00000239019 ENSMUSP00000158938 TRANSLATION protein_coding - - - 525.0 4.0 5.85 0.0 344.5 0.0 -4,-5 0.0 16 4.0 MINOR ENSMUSG00000045103 Dmd ENSMUST00000113991 ENSMUSP00000109624 TRANSLATION protein_coding - CCDS85787.1 1 617.0 4.0 5.85 12.2 365.8 0.0 -4,-5 0.8403 17 7.0 MINOR ENSMUSG00000045103 Dmd ENSMUST00000146331 - NO_TRANSLATION retained_intron ENSMUSG00000045103 Dmd ENSMUST00000127295 - NO_TRANSLATION retained_intron ENSMUSG00000071769 Rhox3h ENSMUST00000185138 ENSMUSP00000138867 TRANSLATION protein_coding start - 1 178.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071769 Rhox3h ENSMUST00000096457 ENSMUSP00000094196 TRANSLATION protein_coding - CCDS53060.1 5 215.0 0.0 1.8 0.0 42.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071769 Rhox3h ENSMUST00000184824 ENSMUSP00000139320 TRANSLATION protein_coding start - 1 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031154 Otud5 ENSMUST00000150644 - NO_TRANSLATION retained_intron ENSMUSG00000031154 Otud5 ENSMUST00000115666 ENSMUSP00000111330 TRANSLATION protein_coding - CCDS72336.1 1 567.0 0.0 4.75 10.2 60.6 0.0 -4,-5 0.9954 5 11.0 ALTERNATIVE:1 ENSMUSG00000031154 Otud5 ENSMUST00000152899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031154 Otud5 ENSMUST00000148841 - NO_TRANSLATION retained_intron ENSMUSG00000031154 Otud5 ENSMUST00000033494 ENSMUSP00000033494 TRANSLATION protein_coding - CCDS29975.1 1 566.0 0.0 4.75 10.2 60.6 0.0 -4,-5 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000031154 Otud5 ENSMUST00000115667 ENSMUSP00000111331 TRANSLATION protein_coding - - 5 571.0 0.0 4.75 10.2 62.3 0.0 -4,-5 0.834 5 11.0 ALTERNATIVE:1 ENSMUSG00000031154 Otud5 ENSMUST00000115668 ENSMUSP00000111332 TRANSLATION protein_coding - CCDS72335.1 1 523.0 0.0 4.75 0.4 60.6 0.0 -4,-5 0.1688 5 8.0 MINOR ENSMUSG00000031154 Otud5 ENSMUST00000130908 - NO_TRANSLATION retained_intron ENSMUSG00000031154 Otud5 ENSMUST00000115665 ENSMUSP00000111329 TRANSLATION protein_coding - - 5 517.0 0.0 4.75 0.4 60.6 0.0 -4,-5 0.0798 5 8.0 MINOR ENSMUSG00000031293 Rs1 ENSMUST00000033650 ENSMUSP00000033650 TRANSLATION protein_coding - CCDS30505.1 1 224.0 0.0 3.2 17.0 97.6 0.0 2,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031293 Rs1 ENSMUST00000150170 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031293 Rs1 ENSMUST00000112368 ENSMUSP00000107987 TRANSLATION protein_coding - - 3 180.0 0.0 3.2 0.0 97.6 0.0 -4,-6 0.0063 1 12.0 MINOR ENSMUSG00000073255 Gm14632 ENSMUST00000177917 ENSMUSP00000136274 TRANSLATION protein_coding - CCDS53033.1 5 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073255 Gm14632 ENSMUST00000101654 ENSMUSP00000099177 TRANSLATION protein_coding - CCDS53033.1 1 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031201 Brcc3 ENSMUST00000152228 ENSMUSP00000127772 TRANSLATION protein_coding stop - 5 50.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031201 Brcc3 ENSMUST00000151938 - NO_TRANSLATION retained_intron ENSMUSG00000031201 Brcc3 ENSMUST00000114074 ENSMUSP00000109708 TRANSLATION protein_coding - CCDS41031.1 1 291.0 3.0 6.236 3.8 151.5 0.0 -4,-7 1.0 6 15.898 PRINCIPAL:1 ENSMUSG00000031201 Brcc3 ENSMUST00000033544 ENSMUSP00000033544 TRANSLATION protein_coding - CCDS41031.1 1 291.0 3.0 6.236 3.8 151.5 0.0 -4,-7 1.0 6 15.898 PRINCIPAL:1 ENSMUSG00000031201 Brcc3 ENSMUST00000124321 - NO_TRANSLATION retained_intron ENSMUSG00000031201 Brcc3 ENSMUST00000133781 ENSMUSP00000123031 TRANSLATION protein_coding stop - 5 158.0 3.0 4.0 0.0 153.2 0.0 -4,-6 0.0028 1 -2.0 MINOR ENSMUSG00000031201 Brcc3 ENSMUST00000118428 ENSMUSP00000114057 TRANSLATION protein_coding - - 5 247.0 3.0 5.236 0.0 151.5 0.0 -4,-7 0.013 3 12.9 MINOR ENSMUSG00000042473 Tbc1d8b ENSMUST00000123430 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042473 Tbc1d8b ENSMUST00000096313 ENSMUSP00000094036 TRANSLATION protein_coding - CCDS41146.1 1 1114.0 5.0 5.6195 4.1 265.8 0.0 -4,-7 1.0 21 19.0 PRINCIPAL:1 ENSMUSG00000031149 Praf2 ENSMUST00000033489 ENSMUSP00000033489 TRANSLATION protein_coding - CCDS29971.1 1 178.0 0.0 2.8 14.4 108.2 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000073176 Zfp449 ENSMUST00000101560 ENSMUSP00000099096 TRANSLATION protein_coding - CCDS30143.1 1 518.0 28.0 0.8 9.8 292.8 0.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000061778 Mospd2 ENSMUST00000134950 - NO_TRANSLATION retained_intron ENSMUSG00000061778 Mospd2 ENSMUST00000112247 ENSMUSP00000107866 TRANSLATION protein_coding - CCDS72468.1 1 481.0 0.0 7.6 0.1 176.7 0.0 -4,-6 0.2501 10 8.0 MINOR ENSMUSG00000061778 Mospd2 ENSMUST00000154681 - NO_TRANSLATION retained_intron ENSMUSG00000061778 Mospd2 ENSMUST00000124523 - NO_TRANSLATION retained_intron ENSMUSG00000061778 Mospd2 ENSMUST00000112248 ENSMUSP00000107867 TRANSLATION protein_coding - CCDS72467.1 1 486.0 0.0 7.6 6.9 176.7 0.0 -4,-6 0.8447 10 9.989 ALTERNATIVE:1 ENSMUSG00000061778 Mospd2 ENSMUST00000139792 - NO_TRANSLATION retained_intron ENSMUSG00000061778 Mospd2 ENSMUST00000004715 ENSMUSP00000004715 TRANSLATION protein_coding - CCDS53241.1 1 518.0 0.0 7.6 9.9 176.7 0.0 -4,-6 1.0 11 11.0 PRINCIPAL:3 ENSMUSG00000061778 Mospd2 ENSMUST00000176221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000061778 Mospd2 ENSMUST00000146813 - NO_TRANSLATION retained_intron ENSMUSG00000047996 Prrg1 ENSMUST00000137011 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047996 Prrg1 ENSMUST00000132852 - NO_TRANSLATION retained_intron ENSMUSG00000047996 Prrg1 ENSMUST00000148345 - NO_TRANSLATION retained_intron ENSMUSG00000047996 Prrg1 ENSMUST00000114024 ENSMUSP00000109658 TRANSLATION protein_coding - CCDS53121.1 2 218.0 10.0 1.7 9.9 71.6 1.0 -4,-6 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000047996 Prrg1 ENSMUST00000126209 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047996 Prrg1 ENSMUST00000156427 - NO_TRANSLATION retained_intron ENSMUSG00000047996 Prrg1 ENSMUST00000177904 ENSMUSP00000136713 TRANSLATION protein_coding - CCDS53121.1 2 218.0 10.0 1.7 9.9 71.6 1.0 -4,-6 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000047996 Prrg1 ENSMUST00000126994 - NO_TRANSLATION retained_intron ENSMUSG00000047996 Prrg1 ENSMUST00000134602 ENSMUSP00000117104 TRANSLATION protein_coding stop - 3 38.0 4.0 0.0 0.0 21.8 0.0 -4,-6 0.0004 - -2.0 MINOR ENSMUSG00000047996 Prrg1 ENSMUST00000114025 ENSMUSP00000109659 TRANSLATION protein_coding - CCDS53121.1 1 218.0 10.0 1.7 9.9 71.6 1.0 -4,-6 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000031375 Bgn ENSMUST00000141945 - NO_TRANSLATION retained_intron ENSMUSG00000031375 Bgn ENSMUST00000130873 - NO_TRANSLATION retained_intron ENSMUSG00000031375 Bgn ENSMUST00000155231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031375 Bgn ENSMUST00000140803 - NO_TRANSLATION retained_intron ENSMUSG00000031375 Bgn ENSMUST00000133394 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031375 Bgn ENSMUST00000183174 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031375 Bgn ENSMUST00000033741 ENSMUSP00000033741 TRANSLATION protein_coding - CCDS30204.1 1 369.0 0.0 6.4 5.8 160.5 0.0 3,-2 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000084063 Gm5934 ENSMUST00000120734 ENSMUSP00000113623 TRANSLATION protein_coding - CCDS53020.1 5 212.0 0.0 2.35 0.0 35.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031137 Fgf13 ENSMUST00000150413 - NO_TRANSLATION retained_intron ENSMUSG00000031137 Fgf13 ENSMUST00000119833 ENSMUSP00000113639 TRANSLATION protein_coding - - 5 187.0 7.0 3.85 0.0 147.7 0.0 -4,-6 0.0076 2 17.736 MINOR ENSMUSG00000031137 Fgf13 ENSMUST00000145767 ENSMUSP00000119897 TRANSLATION protein_coding stop - 2 43.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031137 Fgf13 ENSMUST00000033473 ENSMUSP00000033473 TRANSLATION protein_coding - CCDS30157.1 1 245.0 7.0 3.85 36.9 147.7 0.0 -4,-7 1.0 2 21.736 PRINCIPAL:1 ENSMUSG00000031137 Fgf13 ENSMUST00000131319 ENSMUSP00000115765 TRANSLATION protein_coding stop - 3 69.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031137 Fgf13 ENSMUST00000119306 ENSMUSP00000113206 TRANSLATION protein_coding - CCDS72383.1 1 192.0 7.0 3.982 8.3 147.7 0.0 -4,-7 0.4122 2 18.812 MINOR ENSMUSG00000031137 Fgf13 ENSMUST00000138503 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031137 Fgf13 ENSMUST00000123660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031137 Fgf13 ENSMUST00000124402 ENSMUSP00000114905 TRANSLATION protein_coding stop - 2 97.0 1.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000046774 8030474K03Rik ENSMUST00000163399 ENSMUSP00000130455 TRANSLATION nonsense_mediated_decay - - 1 546.0 0.0 0.0 0.0 613.5 0.0 -4,-5 0.1838 - -2.0 MINOR ENSMUSG00000046774 8030474K03Rik ENSMUST00000149761 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046774 8030474K03Rik ENSMUST00000151231 ENSMUSP00000133189 TRANSLATION protein_coding - - 5 554.0 0.0 0.0 0.1 618.4 0.0 -4,-5 0.7848 - 6.0 PRINCIPAL:1 ENSMUSG00000054667 Irs4 ENSMUST00000067841 ENSMUSP00000067085 TRANSLATION protein_coding - CCDS30445.1 1 1216.0 0.0 0.0 0.0 99.9 0.0 -2,2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000072249 Fthl17f ENSMUST00000097029 ENSMUSP00000094793 TRANSLATION protein_coding - CCDS40854.1 - 176.0 0.0 1.0 5.6 91.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031376 Atp2b3 ENSMUST00000033744 ENSMUSP00000033744 TRANSLATION protein_coding - CCDS85778.1 1 1144.0 3.0 11.035 0.0 434.0 3.0 -4,-5 0.1947 22 10.902 MINOR ENSMUSG00000031376 Atp2b3 ENSMUST00000088429 ENSMUSP00000085775 TRANSLATION protein_coding - CCDS30205.1 1 1220.0 3.0 11.365 16.0 491.3 3.0 -4,-5 1.0 24 18.488 PRINCIPAL:1 ENSMUSG00000031376 Atp2b3 ENSMUST00000114479 ENSMUSP00000110123 TRANSLATION protein_coding - - 5 1173.0 3.0 11.035 18.2 451.9 3.0 -4,-5 0.7145 24 15.976 MINOR ENSMUSG00000067262 Vmn1r239-ps ENSMUST00000127465 ENSMUSP00000158116 TRANSLATION protein_coding - - - 310.0 0.0 0.0 0.1 449.6 0.0 -4,-7 0.7528 - 6.0 PRINCIPAL:1 ENSMUSG00000031012 Cask ENSMUST00000156096 ENSMUSP00000120299 TRANSLATION protein_coding start - 5 871.0 26.0 15.08 0.0 622.7 0.0 -4,-7 0.0634 32 -2.0 MINOR ENSMUSG00000031012 Cask ENSMUST00000128095 ENSMUSP00000122664 TRANSLATION protein_coding start - 5 191.0 16.0 3.698 0.0 204.3 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000031012 Cask ENSMUST00000115436 ENSMUSP00000111096 TRANSLATION protein_coding - CCDS40878.1 2 897.0 32.0 16.16 17.6 640.9 0.0 -4,-5 1.0 32 16.924 PRINCIPAL:4 ENSMUSG00000031012 Cask ENSMUST00000139735 ENSMUSP00000117862 TRANSLATION protein_coding start/stop - 5 282.0 18.0 4.55 0.0 227.2 0.0 -4,-5 0.0 13 -2.0 MINOR ENSMUSG00000031012 Cask ENSMUST00000155989 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031012 Cask ENSMUST00000132240 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031012 Cask ENSMUST00000152358 - NO_TRANSLATION retained_intron ENSMUSG00000031012 Cask ENSMUST00000128012 ENSMUSP00000114187 TRANSLATION protein_coding start/stop - 5 249.0 3.0 4.96 0.0 139.9 0.0 -4,-6 0.0 8 -2.0 MINOR ENSMUSG00000031012 Cask ENSMUST00000033321 ENSMUSP00000033321 TRANSLATION protein_coding - - 5 908.0 32.0 15.91 13.1 640.9 0.0 -4,-5 0.7367 32 15.634 MINOR ENSMUSG00000031012 Cask ENSMUST00000124710 ENSMUSP00000119584 TRANSLATION protein_coding stop - 5 155.0 17.0 5.24 0.0 116.5 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031012 Cask ENSMUST00000115435 ENSMUSP00000111095 TRANSLATION protein_coding - - 3 111.0 0.0 1.75 0.0 47.5 0.0 -4,-7 0.0 - 0.0 MINOR ENSMUSG00000031012 Cask ENSMUST00000115438 ENSMUSP00000111098 TRANSLATION protein_coding - CCDS72343.1 1 920.0 32.0 15.41 23.7 640.9 0.0 -4,-5 0.9831 32 16.5 ALTERNATIVE:1 ENSMUSG00000073177 Gm773 ENSMUST00000101561 ENSMUSP00000099097 TRANSLATION protein_coding - CCDS30142.1 1 206.0 0.0 4.5 0.1 134.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073177 Gm773 ENSMUST00000126937 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045427 Hnrnph2 ENSMUST00000059297 ENSMUSP00000050838 TRANSLATION protein_coding - CCDS30397.1 1 449.0 0.0 0.6 12.5 180.1 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000045427 Hnrnph2 ENSMUST00000113203 ENSMUSP00000108829 TRANSLATION protein_coding - CCDS30397.1 5 449.0 0.0 0.6 12.5 180.1 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000045427 Hnrnph2 ENSMUST00000050331 ENSMUSP00000108827 TRANSLATION protein_coding - CCDS30397.1 5 449.0 0.0 0.6 12.5 180.1 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000045427 Hnrnph2 ENSMUST00000113202 ENSMUSP00000108828 TRANSLATION protein_coding - CCDS30397.1 2 449.0 0.0 0.6 12.5 180.1 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000045427 Hnrnph2 ENSMUST00000074950 ENSMUSP00000074483 TRANSLATION protein_coding - CCDS30397.1 1 449.0 0.0 0.6 12.5 180.1 0.0 -4,-6 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000096620 Gm5169 ENSMUST00000096469 ENSMUSP00000094211 TRANSLATION protein_coding - CCDS40894.1 1 212.0 0.0 2.5 0.0 39.2 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031422 Morf4l2 ENSMUST00000033797 ENSMUSP00000033797 TRANSLATION protein_coding - CCDS30422.1 1 288.0 0.0 3.13 11.0 178.8 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000031422 Morf4l2 ENSMUST00000080411 ENSMUSP00000108722 TRANSLATION protein_coding - CCDS30422.1 1 288.0 0.0 3.13 11.0 178.8 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000031422 Morf4l2 ENSMUST00000155207 ENSMUSP00000121632 TRANSLATION protein_coding stop - 2 214.0 0.0 2.13 0.0 108.9 0.0 -4,-6 0.0003 7 -2.0 MINOR ENSMUSG00000031422 Morf4l2 ENSMUST00000164609 ENSMUSP00000129774 TRANSLATION protein_coding - CCDS30422.1 2 288.0 0.0 3.13 11.0 178.8 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000031422 Morf4l2 ENSMUST00000136650 ENSMUSP00000121412 TRANSLATION protein_coding stop - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000031422 Morf4l2 ENSMUST00000131923 ENSMUSP00000120404 TRANSLATION protein_coding stop - 2 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031422 Morf4l2 ENSMUST00000166478 ENSMUSP00000131909 TRANSLATION protein_coding - CCDS30422.1 2 288.0 0.0 3.13 11.0 178.8 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000031422 Morf4l2 ENSMUST00000137979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031422 Morf4l2 ENSMUST00000135731 ENSMUSP00000119517 TRANSLATION protein_coding stop - 1 59.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000031422 Morf4l2 ENSMUST00000137605 ENSMUSP00000115303 TRANSLATION protein_coding stop - 3 204.0 0.0 1.55 0.0 98.3 0.0 -4,-6 0.0 7 -2.0 MINOR ENSMUSG00000031422 Morf4l2 ENSMUST00000113097 ENSMUSP00000108720 TRANSLATION protein_coding - CCDS30422.1 1 288.0 0.0 3.13 11.0 178.8 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000031422 Morf4l2 ENSMUST00000166930 ENSMUSP00000126363 TRANSLATION protein_coding - CCDS30422.1 3 288.0 0.0 3.13 11.0 178.8 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000031422 Morf4l2 ENSMUST00000152150 ENSMUSP00000115911 TRANSLATION protein_coding stop - 2 58.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000031422 Morf4l2 ENSMUST00000113095 ENSMUSP00000108718 TRANSLATION protein_coding stop - 3 174.0 0.0 0.8 0.0 61.2 0.0 -4,-6 0.0 6 -2.0 MINOR ENSMUSG00000031422 Morf4l2 ENSMUST00000169418 ENSMUSP00000132643 TRANSLATION protein_coding - CCDS30422.1 2 288.0 0.0 3.13 11.0 178.8 0.0 -4,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000083628 Gm2030 ENSMUST00000119590 ENSMUSP00000113055 TRANSLATION protein_coding - CCDS53025.1 5 212.0 0.0 2.8 0.0 38.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031383 Dusp9 ENSMUST00000019701 ENSMUSP00000019701 TRANSLATION protein_coding - CCDS30206.1 1 452.0 9.0 2.0 0.0 166.4 0.0 -4,-7 1.0 6 18.0 PRINCIPAL:1 ENSMUSG00000040621 Gemin8 ENSMUST00000056410 ENSMUSP00000085137 TRANSLATION protein_coding - CCDS41207.1 1 238.0 0.0 1.0 0.4 334.5 0.0 -4,0 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000040621 Gemin8 ENSMUST00000096252 ENSMUSP00000093971 TRANSLATION protein_coding - CCDS81195.1 1 207.0 0.0 1.0 0.0 285.7 0.0 -4,-2 0.1751 1 9.072 MINOR ENSMUSG00000040621 Gemin8 ENSMUST00000130880 ENSMUSP00000118482 TRANSLATION protein_coding - CCDS41207.1 5 238.0 0.0 1.0 0.4 334.5 0.0 -4,0 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000040621 Gemin8 ENSMUST00000087169 ENSMUSP00000084414 TRANSLATION protein_coding - CCDS41207.1 1 238.0 0.0 1.0 0.4 334.5 0.0 -4,0 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000040621 Gemin8 ENSMUST00000166440 ENSMUSP00000128502 TRANSLATION protein_coding stop - 3 147.0 0.0 0.0 0.0 147.8 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000040621 Gemin8 ENSMUST00000152248 ENSMUSP00000131284 TRANSLATION protein_coding stop - 2 186.0 0.0 0.0 0.0 216.6 0.0 -4,0 0.0006 1 -2.0 MINOR ENSMUSG00000068048 Rhox9 ENSMUST00000089062 ENSMUSP00000086462 TRANSLATION protein_coding - CCDS30083.1 1 227.0 0.0 1.7 0.1 57.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000068048 Rhox9 ENSMUST00000170643 ENSMUSP00000126022 TRANSLATION protein_coding - - 1 181.0 0.0 0.2 0.0 24.3 0.0 -4,-5 0.0 - 3.24 MINOR ENSMUSG00000033777 Tlr13 ENSMUST00000139380 - NO_TRANSLATION retained_intron ENSMUSG00000033777 Tlr13 ENSMUST00000040065 ENSMUSP00000043101 TRANSLATION protein_coding - CCDS30338.1 1 991.0 0.0 1.0 0.0 278.6 0.0 -4,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000051361 6030498E09Rik ENSMUST00000168144 ENSMUSP00000132324 TRANSLATION protein_coding - CCDS40949.1 5 169.0 0.0 0.0 0.0 0.0 1.0 -4,-1 0.8779 - 0.0 PRINCIPAL:1 ENSMUSG00000051361 6030498E09Rik ENSMUST00000050744 ENSMUSP00000061776 TRANSLATION protein_coding - CCDS40949.1 1 169.0 0.0 0.0 0.0 0.0 1.0 -4,-1 0.8779 - 0.0 PRINCIPAL:1 ENSMUSG00000072934 Trpc5os ENSMUST00000178233 ENSMUSP00000147698 TRANSLATION protein_coding - CCDS85811.1 5 110.0 0.0 0.6 8.3 0.0 0.0 -3,-4 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000072934 Trpc5os ENSMUST00000155206 ENSMUSP00000148184 TRANSLATION protein_coding - CCDS85811.1 1 110.0 0.0 0.6 8.3 0.0 0.0 -3,-4 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000051220 Ercc6l ENSMUST00000056904 ENSMUSP00000050592 TRANSLATION protein_coding - CCDS30321.1 1 1240.0 4.0 0.45 0.0 229.8 0.0 -4,-5 1.0 17 16.0 PRINCIPAL:1 ENSMUSG00000094714 Gm16430 ENSMUST00000169006 ENSMUSP00000132567 TRANSLATION protein_coding - CCDS53073.1 3 155.0 0.0 1.75 0.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094714 Gm16430 ENSMUST00000178145 ENSMUSP00000136901 TRANSLATION protein_coding - CCDS53073.1 1 155.0 0.0 1.75 0.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047344 Lancl3 ENSMUST00000069763 ENSMUSP00000064516 TRANSLATION protein_coding - CCDS30007.1 1 420.0 9.0 3.4 11.6 241.1 0.0 -4,-5 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000050148 Ubqln2 ENSMUST00000060714 ENSMUSP00000056888 TRANSLATION protein_coding - CCDS30482.1 - 638.0 0.0 0.2 0.1 94.7 0.0 -4,-6 1.0 9 12.0 PRINCIPAL:1 ENSMUSG00000025038 Efhc2 ENSMUST00000026014 ENSMUSP00000026014 TRANSLATION protein_coding - CCDS40883.1 1 750.0 3.0 1.5 12.0 313.6 0.0 -4,-2 1.0 4 18.0 PRINCIPAL:1 ENSMUSG00000025283 Sat1 ENSMUST00000150046 - NO_TRANSLATION retained_intron ENSMUSG00000025283 Sat1 ENSMUST00000026318 ENSMUSP00000026318 TRANSLATION protein_coding - CCDS30495.1 1 171.0 20.0 4.5 36.9 57.5 0.0 -4,-6 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000025283 Sat1 ENSMUST00000112551 ENSMUSP00000108170 TRANSLATION protein_coding - - 2 178.0 20.0 4.17 36.9 40.9 0.0 -4,-6 0.6479 - 19.606 MINOR ENSMUSG00000025283 Sat1 ENSMUST00000138944 - NO_TRANSLATION retained_intron ENSMUSG00000025283 Sat1 ENSMUST00000152463 ENSMUSP00000138776 TRANSLATION nonsense_mediated_decay - - 5 71.0 1.0 2.0 0.0 0.0 0.0 -4,-6 0.0003 - -2.0 MINOR ENSMUSG00000025283 Sat1 ENSMUST00000123337 - NO_TRANSLATION retained_intron ENSMUSG00000025283 Sat1 ENSMUST00000134855 - NO_TRANSLATION retained_intron ENSMUSG00000001131 Timp1 ENSMUST00000009530 ENSMUSP00000009530 TRANSLATION protein_coding - CCDS30046.1 1 205.0 0.0 4.55 9.9 203.6 0.0 3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000001131 Timp1 ENSMUST00000115342 ENSMUSP00000110999 TRANSLATION protein_coding - CCDS30046.1 1 205.0 0.0 4.55 9.9 203.6 0.0 3,-2 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000044149 Nkrf ENSMUST00000057093 ENSMUSP00000061546 TRANSLATION protein_coding - CCDS30065.1 1 690.0 0.0 0.2 5.1 96.8 0.0 -4,-5 0.4255 11 4.644 MINOR ENSMUSG00000044149 Nkrf ENSMUST00000239259 ENSMUSP00000159216 TRANSLATION protein_coding - - - 784.0 0.0 0.7 8.4 175.7 0.0 -4,-7 1.0 11 15.0 PRINCIPAL:1 ENSMUSG00000041380 Htr2c ENSMUST00000096299 ENSMUSP00000094021 TRANSLATION protein_coding - CCDS30459.1 1 459.0 0.0 4.3 9.9 223.4 9.0 0,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000041380 Htr2c ENSMUST00000036303 ENSMUSP00000043936 TRANSLATION protein_coding - CCDS30459.1 1 459.0 0.0 4.3 9.9 223.4 9.0 0,-3 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000041380 Htr2c ENSMUST00000134368 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041380 Htr2c ENSMUST00000131999 - NO_TRANSLATION retained_intron ENSMUSG00000041380 Htr2c ENSMUST00000112831 ENSMUSP00000108450 TRANSLATION protein_coding - - 3 173.0 0.0 2.12 0.0 92.4 6.0 0,-3 0.0037 - 1.638 MINOR ENSMUSG00000041380 Htr2c ENSMUST00000149260 - NO_TRANSLATION retained_intron ENSMUSG00000041380 Htr2c ENSMUST00000156697 ENSMUSP00000138772 TRANSLATION protein_coding - - 5 172.0 0.0 2.16 0.0 92.4 6.0 0,-3 0.0037 - 1.722 MINOR ENSMUSG00000071748 Styx-ps ENSMUST00000096420 ENSMUSP00000094153 TRANSLATION protein_coding - - - 223.0 8.0 1.0 33.0 130.7 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000017057 Il13ra1 ENSMUST00000033418 ENSMUSP00000033418 TRANSLATION protein_coding - CCDS30057.1 1 424.0 0.0 6.4 7.8 90.5 0.0 3,-2 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000096834 Gm15127 ENSMUST00000101186 ENSMUSP00000098746 TRANSLATION protein_coding - CCDS59777.1 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:2 ENSMUSG00000096834 Gm15127 ENSMUST00000112753 ENSMUSP00000108373 TRANSLATION protein_coding - - 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6074 - 0.0 ALTERNATIVE:2 ENSMUSG00000079508 Apoo ENSMUST00000113895 ENSMUSP00000109528 TRANSLATION protein_coding - CCDS57770.1 1 164.0 0.0 3.65 1.1 134.9 2.0 -4,-5 0.316 6 12.033 MINOR ENSMUSG00000079508 Apoo ENSMUST00000113898 ENSMUSP00000109531 TRANSLATION protein_coding - CCDS53136.1 3 198.0 0.0 3.65 10.3 134.9 2.0 -1,2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000079508 Apoo ENSMUST00000113897 ENSMUSP00000109530 TRANSLATION protein_coding - CCDS57769.1 1 212.0 0.0 3.65 0.0 134.9 2.0 -4,-7 0.1694 6 12.0 MINOR ENSMUSG00000079508 Apoo ENSMUST00000113896 ENSMUSP00000109529 TRANSLATION protein_coding - CCDS57770.1 1 164.0 0.0 3.65 1.1 134.9 2.0 -4,-5 0.316 6 12.033 MINOR ENSMUSG00000095510 Rhox3f ENSMUST00000115172 ENSMUSP00000110826 TRANSLATION protein_coding - CCDS53058.1 1 215.0 0.0 1.8 0.0 45.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095510 Rhox3f ENSMUST00000183696 ENSMUSP00000139277 TRANSLATION protein_coding start - 5 205.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0121 - -2.0 MINOR ENSMUSG00000095510 Rhox3f ENSMUST00000184451 ENSMUSP00000138833 TRANSLATION protein_coding - CCDS53058.1 5 215.0 0.0 1.8 0.0 45.0 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095510 Rhox3f ENSMUST00000185008 ENSMUSP00000138815 TRANSLATION protein_coding start - 5 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031153 Gripap1 ENSMUST00000144946 - NO_TRANSLATION retained_intron ENSMUSG00000031153 Gripap1 ENSMUST00000136930 ENSMUSP00000116140 TRANSLATION protein_coding stop - 1 485.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0316 18 -2.0 MINOR ENSMUSG00000031153 Gripap1 ENSMUST00000101694 ENSMUSP00000099218 TRANSLATION protein_coding - - 5 792.0 0.0 0.0 2.6 0.0 0.0 -4,-5 0.2355 29 0.524 MINOR ENSMUSG00000031153 Gripap1 ENSMUST00000140540 ENSMUSP00000116683 TRANSLATION protein_coding stop - 1 469.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0311 17 -2.0 MINOR ENSMUSG00000031153 Gripap1 ENSMUST00000132456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031153 Gripap1 ENSMUST00000147232 - NO_TRANSLATION retained_intron ENSMUSG00000031153 Gripap1 ENSMUST00000065932 ENSMUSP00000068789 TRANSLATION protein_coding - CCDS40844.1 1 806.0 0.0 0.0 2.9 0.0 0.0 -4,-5 0.4443 30 0.622 MINOR ENSMUSG00000031153 Gripap1 ENSMUST00000115675 ENSMUSP00000111339 TRANSLATION protein_coding - CCDS72334.1 1 837.0 0.0 0.0 7.1 0.0 0.0 -4,-5 1.0 30 2.0 PRINCIPAL:1 ENSMUSG00000031153 Gripap1 ENSMUST00000135622 - NO_TRANSLATION retained_intron ENSMUSG00000031153 Gripap1 ENSMUST00000141178 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031311 Nono ENSMUST00000134783 - NO_TRANSLATION retained_intron ENSMUSG00000031311 Nono ENSMUST00000033673 ENSMUSP00000033673 TRANSLATION protein_coding - CCDS30316.1 1 473.0 0.0 6.25 11.2 199.0 0.0 -4,-7 1.0 15 15.0 PRINCIPAL:1 ENSMUSG00000031311 Nono ENSMUST00000148312 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031311 Nono ENSMUST00000136251 - NO_TRANSLATION retained_intron ENSMUSG00000031311 Nono ENSMUST00000126019 - NO_TRANSLATION retained_intron ENSMUSG00000031311 Nono ENSMUST00000147498 - NO_TRANSLATION retained_intron ENSMUSG00000031311 Nono ENSMUST00000147708 ENSMUSP00000122890 TRANSLATION protein_coding stop - 5 98.0 0.0 1.0 0.0 24.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000096097 H2al1c ENSMUST00000178806 ENSMUSP00000135929 TRANSLATION protein_coding - CCDS57730.1 - 105.0 0.0 1.0 0.0 45.6 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042525 4933428M09Rik ENSMUST00000113046 ENSMUSP00000108669 TRANSLATION protein_coding - - 1 192.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5831 - 0.0 PRINCIPAL:1 ENSMUSG00000025666 Tmem47 ENSMUST00000171953 ENSMUSP00000129793 TRANSLATION protein_coding - CCDS30254.1 1 181.0 0.0 3.0 33.3 0.0 3.0 -3,-6 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000025666 Tmem47 ENSMUST00000026760 ENSMUSP00000026760 TRANSLATION protein_coding - CCDS30254.1 1 181.0 0.0 3.0 33.3 0.0 3.0 -3,-6 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000025666 Tmem47 ENSMUST00000150052 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067562 Dmrtc1c1 ENSMUST00000118218 ENSMUSP00000113737 TRANSLATION protein_coding - CCDS53158.1 1 238.0 0.0 0.0 0.0 42.5 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000067562 Dmrtc1c1 ENSMUST00000131451 ENSMUSP00000119462 TRANSLATION protein_coding stop - 3 140.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040990 Sh3kbp1 ENSMUST00000134062 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040990 Sh3kbp1 ENSMUST00000141354 ENSMUSP00000114262 TRANSLATION nonsense_mediated_decay - - 1 447.0 0.0 4.646 0.0 116.8 0.0 -4,-5 0.0 15 -2.0 MINOR ENSMUSG00000040990 Sh3kbp1 ENSMUST00000112453 ENSMUSP00000108072 TRANSLATION protein_coding - - 5 464.0 0.0 4.35 0.0 57.7 0.0 -4,-5 0.0 18 0.666 MINOR ENSMUSG00000040990 Sh3kbp1 ENSMUST00000152426 ENSMUSP00000117618 TRANSLATION protein_coding start - 3 209.0 0.0 1.85 0.0 0.0 0.0 -4,-7 0.0 11 -2.0 MINOR ENSMUSG00000040990 Sh3kbp1 ENSMUST00000150433 - NO_TRANSLATION retained_intron ENSMUSG00000040990 Sh3kbp1 ENSMUST00000123433 ENSMUSP00000114799 TRANSLATION protein_coding stop - 5 208.0 0.0 2.296 0.0 59.1 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000040990 Sh3kbp1 ENSMUST00000130987 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040990 Sh3kbp1 ENSMUST00000073094 ENSMUSP00000072840 TRANSLATION protein_coding - - 5 709.0 0.0 7.496 4.7 180.4 0.0 -4,-5 0.3323 26 8.975 ALTERNATIVE:1 ENSMUSG00000040990 Sh3kbp1 ENSMUST00000080394 ENSMUSP00000079257 TRANSLATION protein_coding - CCDS41194.1 1 628.0 0.0 6.496 6.0 116.8 0.0 -4,-5 0.3842 24 6.653 MINOR ENSMUSG00000040990 Sh3kbp1 ENSMUST00000112447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040990 Sh3kbp1 ENSMUST00000128185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040990 Sh3kbp1 ENSMUST00000142426 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040990 Sh3kbp1 ENSMUST00000112456 ENSMUSP00000108075 TRANSLATION protein_coding - CCDS53234.1 1 665.0 0.0 7.496 6.0 180.4 0.0 -4,-5 1.0 25 9.317 PRINCIPAL:2 ENSMUSG00000040990 Sh3kbp1 ENSMUST00000112451 ENSMUSP00000108070 TRANSLATION protein_coding - CCDS53235.1 1 427.0 0.0 4.35 12.4 57.7 0.0 -4,-5 0.7613 18 3.666 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000114129 ENSMUSP00000109764 TRANSLATION protein_coding - CCDS30233.1 1 411.0 3.0 7.015 8.0 200.3 0.0 -4,-5 0.9826 8 17.562 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000130802 ENSMUSP00000116875 TRANSLATION protein_coding stop - 5 228.0 0.0 2.765 0.0 101.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000143784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000004221 Ikbkg ENSMUST00000139036 - NO_TRANSLATION retained_intron ENSMUSG00000004221 Ikbkg ENSMUST00000135165 ENSMUSP00000116615 TRANSLATION protein_coding stop - 5 249.0 0.0 3.515 0.0 101.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000164101 ENSMUSP00000126770 TRANSLATION protein_coding - CCDS41023.1 5 412.0 4.0 7.015 9.2 200.3 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000004221 Ikbkg ENSMUST00000138564 ENSMUSP00000118884 TRANSLATION protein_coding stop - 5 141.0 0.0 1.765 0.0 101.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000144947 ENSMUSP00000115829 TRANSLATION protein_coding stop - 2 126.0 0.0 1.6 0.0 101.9 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000114133 ENSMUSP00000109768 TRANSLATION protein_coding - CCDS41023.1 1 412.0 4.0 7.015 9.2 200.3 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000004221 Ikbkg ENSMUST00000004330 ENSMUSP00000004330 TRANSLATION protein_coding - CCDS53108.1 1 430.0 3.0 7.015 0.1 200.3 0.0 -4,-5 0.2481 8 15.0 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000114130 ENSMUSP00000109765 TRANSLATION protein_coding - CCDS53109.1 5 424.0 3.0 7.015 0.0 200.3 0.0 -4,-5 0.1925 8 15.0 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000132749 ENSMUSP00000115706 TRANSLATION protein_coding stop - 5 16.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000149525 ENSMUSP00000120080 TRANSLATION protein_coding stop - 1 265.0 0.0 3.515 0.0 101.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000064407 ENSMUSP00000064017 TRANSLATION protein_coding - CCDS30233.1 1 411.0 3.0 7.015 8.0 200.3 0.0 -4,-5 0.9826 8 17.562 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000114127 ENSMUSP00000109762 TRANSLATION protein_coding - CCDS41023.1 1 412.0 4.0 7.015 9.2 200.3 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000004221 Ikbkg ENSMUST00000114128 ENSMUSP00000109763 TRANSLATION protein_coding - CCDS41023.1 2 412.0 4.0 7.015 9.2 200.3 0.0 -4,-5 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000004221 Ikbkg ENSMUST00000180230 ENSMUSP00000136573 TRANSLATION protein_coding - CCDS30233.1 5 411.0 3.0 7.015 8.0 200.3 0.0 -4,-5 0.9826 8 17.562 MINOR ENSMUSG00000004221 Ikbkg ENSMUST00000156707 ENSMUSP00000116230 TRANSLATION protein_coding stop - 3 190.0 0.0 3.5 0.0 88.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000041688 Amot ENSMUST00000125271 ENSMUSP00000116189 TRANSLATION protein_coding start - 5 929.0 0.0 1.03 0.0 310.4 0.0 -4,-5 0.2274 13 -2.0 MINOR ENSMUSG00000041688 Amot ENSMUST00000112836 ENSMUSP00000108455 TRANSLATION protein_coding - CCDS72443.1 5 1126.0 0.0 1.03 0.0 310.4 0.0 -4,-6 0.8429 16 8.0 PRINCIPAL:3 ENSMUSG00000041688 Amot ENSMUST00000138187 ENSMUSP00000117777 TRANSLATION protein_coding start - 1 672.0 0.0 1.03 0.0 310.4 0.0 -4,-6 0.1358 11 -2.0 MINOR ENSMUSG00000041688 Amot ENSMUST00000135832 - NO_TRANSLATION retained_intron ENSMUSG00000041688 Amot ENSMUST00000112835 ENSMUSP00000108454 TRANSLATION protein_coding - - 5 737.0 0.0 1.03 0.0 310.4 0.0 -4,-7 0.8549 9 8.0 ALTERNATIVE:2 ENSMUSG00000041688 Amot ENSMUST00000143610 ENSMUSP00000120226 TRANSLATION protein_coding stop - 5 522.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0065 8 -2.0 MINOR ENSMUSG00000050379 Septin6 ENSMUST00000128766 - NO_TRANSLATION retained_intron ENSMUSG00000050379 Septin6 ENSMUST00000115239 ENSMUSP00000110894 TRANSLATION protein_coding - CCDS53051.1 1 434.0 14.0 7.6 0.0 319.6 0.0 -4,-5 0.2203 11 14.0 MINOR ENSMUSG00000050379 Septin6 ENSMUST00000060474 ENSMUSP00000062014 TRANSLATION protein_coding - CCDS30066.1 1 429.0 14.0 7.6 30.4 319.6 0.0 -4,-5 1.0 11 18.0 PRINCIPAL:4 ENSMUSG00000050379 Septin6 ENSMUST00000053456 ENSMUSP00000054034 TRANSLATION protein_coding - CCDS57749.1 1 427.0 14.0 7.6 28.2 319.6 0.0 -4,-5 0.9916 11 17.7 ALTERNATIVE:1 ENSMUSG00000050379 Septin6 ENSMUST00000152291 ENSMUSP00000116670 TRANSLATION protein_coding stop - 3 141.0 7.0 1.6 0.0 57.6 0.0 -3,-4 0.0 4 -2.0 MINOR ENSMUSG00000031066 Usp11 ENSMUST00000033383 ENSMUSP00000033383 TRANSLATION protein_coding - CCDS53015.1 2 921.0 4.0 12.9 0.0 386.9 0.0 -4,-5 1.0 19 16.0 PRINCIPAL:1 ENSMUSG00000031066 Usp11 ENSMUST00000127294 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031066 Usp11 ENSMUST00000137101 - NO_TRANSLATION retained_intron ENSMUSG00000031066 Usp11 ENSMUST00000149960 - NO_TRANSLATION retained_intron ENSMUSG00000037475 Thoc2 ENSMUST00000151454 - NO_TRANSLATION retained_intron ENSMUSG00000037475 Thoc2 ENSMUST00000124458 ENSMUSP00000119460 TRANSLATION protein_coding start - 1 232.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0007 1 -2.0 MINOR ENSMUSG00000037475 Thoc2 ENSMUST00000151802 - NO_TRANSLATION retained_intron ENSMUSG00000037475 Thoc2 ENSMUST00000155369 ENSMUSP00000120342 TRANSLATION protein_coding start - 5 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037475 Thoc2 ENSMUST00000134084 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037475 Thoc2 ENSMUST00000150443 - NO_TRANSLATION retained_intron ENSMUSG00000037475 Thoc2 ENSMUST00000152921 ENSMUSP00000114148 TRANSLATION protein_coding stop - 2 87.0 0.0 0.0 0.0 0.0 0.0 -3,-6 0.0 - -2.0 MINOR ENSMUSG00000037475 Thoc2 ENSMUST00000130993 - NO_TRANSLATION retained_intron ENSMUSG00000037475 Thoc2 ENSMUST00000143557 ENSMUSP00000118106 TRANSLATION protein_coding start - 5 117.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037475 Thoc2 ENSMUST00000131259 ENSMUSP00000119823 TRANSLATION nonsense_mediated_decay start - 5 53.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000037475 Thoc2 ENSMUST00000145586 ENSMUSP00000118960 TRANSLATION protein_coding start - 5 86.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037475 Thoc2 ENSMUST00000151430 ENSMUSP00000115815 TRANSLATION nonsense_mediated_decay start - 5 165.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000037475 Thoc2 ENSMUST00000123512 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037475 Thoc2 ENSMUST00000129915 ENSMUSP00000121941 TRANSLATION nonsense_mediated_decay start - 5 125.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000037475 Thoc2 ENSMUST00000047037 ENSMUSP00000044677 TRANSLATION protein_coding - CCDS40951.1 5 1594.0 0.0 5.428 7.6 474.3 0.0 -4,-7 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000037475 Thoc2 ENSMUST00000127338 - NO_TRANSLATION retained_intron ENSMUSG00000068122 Agtr2 ENSMUST00000089188 ENSMUSP00000086592 TRANSLATION protein_coding - CCDS40889.1 1 363.0 0.0 1.0 10.3 185.4 0.0 -4,-2 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000068122 Agtr2 ENSMUST00000131150 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045797 4930402K13Rik ENSMUST00000059967 ENSMUSP00000053000 TRANSLATION protein_coding - CCDS57728.1 - 415.0 0.0 0.0 0.0 37.9 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031298 Adgrg2 ENSMUST00000112404 ENSMUSP00000108023 TRANSLATION protein_coding - CCDS41199.1 1 982.0 0.0 4.58 2.8 240.7 14.0 -4,-6 0.8644 7 8.857 ALTERNATIVE:2 ENSMUSG00000031298 Adgrg2 ENSMUST00000112408 ENSMUSP00000108027 TRANSLATION protein_coding - CCDS72459.1 1 1006.0 0.0 4.58 1.8 240.7 14.0 -4,-7 0.7984 7 8.381 ALTERNATIVE:2 ENSMUSG00000031298 Adgrg2 ENSMUST00000112402 ENSMUSP00000108021 TRANSLATION protein_coding - CCDS41197.1 1 995.0 0.0 4.58 2.5 240.7 14.0 -4,-6 0.9173 7 8.714 ALTERNATIVE:2 ENSMUSG00000031298 Adgrg2 ENSMUST00000112405 ENSMUSP00000108024 TRANSLATION protein_coding - CCDS81192.1 1 993.0 0.0 4.58 3.1 240.7 14.0 -4,-6 1.0 7 9.0 PRINCIPAL:4 ENSMUSG00000031298 Adgrg2 ENSMUST00000112398 ENSMUSP00000108017 TRANSLATION protein_coding - - 1 955.0 0.0 4.58 0.7 240.7 14.0 -4,-7 0.3162 7 8.0 ALTERNATIVE:2 ENSMUSG00000031298 Adgrg2 ENSMUST00000123450 - NO_TRANSLATION retained_intron ENSMUSG00000031298 Adgrg2 ENSMUST00000146805 ENSMUSP00000118598 TRANSLATION protein_coding stop - 5 105.0 0.0 0.0 0.0 0.0 3.0 -4,-6 0.0002 1 -2.0 MINOR ENSMUSG00000031298 Adgrg2 ENSMUST00000112400 ENSMUSP00000108019 TRANSLATION protein_coding - CCDS41196.1 1 1009.0 0.0 4.58 1.5 240.7 14.0 -4,-6 0.7174 7 8.238 ALTERNATIVE:2 ENSMUSG00000031298 Adgrg2 ENSMUST00000112401 ENSMUSP00000108020 TRANSLATION protein_coding - CCDS41198.1 5 992.0 0.0 4.58 2.7 240.7 14.0 -4,-6 0.9577 7 8.81 ALTERNATIVE:2 ENSMUSG00000044348 Slc25a53 ENSMUST00000125864 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044348 Slc25a53 ENSMUST00000129807 ENSMUSP00000118095 TRANSLATION protein_coding stop - 5 185.0 0.0 1.0 0.0 29.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000044348 Slc25a53 ENSMUST00000125747 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044348 Slc25a53 ENSMUST00000136300 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044348 Slc25a53 ENSMUST00000140615 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044348 Slc25a53 ENSMUST00000145842 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044348 Slc25a53 ENSMUST00000132171 - NO_TRANSLATION retained_intron ENSMUSG00000044348 Slc25a53 ENSMUST00000113069 ENSMUSP00000108692 TRANSLATION protein_coding - CCDS41140.1 1 346.0 0.0 3.1528 0.7 63.5 0.0 -2,-4 0.3136 3 12.0 MINOR ENSMUSG00000044348 Slc25a53 ENSMUST00000148253 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044348 Slc25a53 ENSMUST00000171738 ENSMUSP00000132572 TRANSLATION protein_coding - CCDS53198.1 2 306.0 0.0 3.0 12.5 63.5 0.0 -4,-5 1.0 3 14.694 PRINCIPAL:1 ENSMUSG00000044348 Slc25a53 ENSMUST00000123516 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044348 Slc25a53 ENSMUST00000056674 ENSMUSP00000050337 TRANSLATION protein_coding stop - 2 232.0 0.0 2.0 0.0 63.5 0.0 -4,-5 0.0028 3 -2.0 MINOR ENSMUSG00000044348 Slc25a53 ENSMUST00000154484 - NO_TRANSLATION retained_intron ENSMUSG00000079509 Zfx ENSMUST00000113926 ENSMUSP00000109559 TRANSLATION protein_coding - CCDS30276.1 1 799.0 52.0 0.6 12.5 669.6 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000079509 Zfx ENSMUST00000113927 ENSMUSP00000109560 TRANSLATION protein_coding - CCDS30276.1 5 799.0 52.0 0.6 12.5 669.6 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000079509 Zfx ENSMUST00000135661 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079509 Zfx ENSMUST00000137853 ENSMUSP00000118903 TRANSLATION protein_coding stop - 1 216.0 0.0 0.0 0.0 184.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079509 Zfx ENSMUST00000113925 ENSMUSP00000109558 TRANSLATION protein_coding - - 1 224.0 0.0 0.0 0.0 177.4 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000079509 Zfx ENSMUST00000088102 ENSMUSP00000085423 TRANSLATION protein_coding - CCDS30276.1 1 799.0 52.0 0.6 12.5 669.6 0.0 -4,-5 1.0 7 21.0 PRINCIPAL:1 ENSMUSG00000079509 Zfx ENSMUST00000130312 - NO_TRANSLATION retained_intron ENSMUSG00000040138 Ndp ENSMUST00000040134 ENSMUSP00000046692 TRANSLATION protein_coding - CCDS30034.1 1 131.0 0.0 1.8 18.7 28.4 0.0 0,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000041229 Phf8 ENSMUST00000112666 ENSMUSP00000108285 TRANSLATION protein_coding - - 1 464.0 21.0 10.18 0.0 81.9 0.0 -4,-6 0.043 5 18.0 MINOR ENSMUSG00000041229 Phf8 ENSMUST00000046950 ENSMUSP00000040765 TRANSLATION protein_coding - CCDS53223.1 5 1023.0 21.0 10.18 9.1 81.9 0.0 -4,-6 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000041229 Phf8 ENSMUST00000148622 ENSMUSP00000122974 TRANSLATION protein_coding stop - 3 151.0 8.0 3.35 0.0 37.5 0.0 -4,-6 0.0004 3 -2.0 MINOR ENSMUSG00000041229 Phf8 ENSMUST00000112668 ENSMUSP00000108287 TRANSLATION protein_coding - - 1 602.0 21.0 10.18 0.0 81.9 0.0 -4,-6 0.0437 8 18.0 MINOR ENSMUSG00000041229 Phf8 ENSMUST00000112670 ENSMUSP00000108289 TRANSLATION protein_coding - - 1 820.0 21.0 10.18 0.0 81.9 0.0 -4,-6 0.0624 10 18.0 MINOR ENSMUSG00000041229 Phf8 ENSMUST00000168501 ENSMUSP00000127653 TRANSLATION protein_coding - CCDS53223.1 5 1023.0 21.0 10.18 9.1 81.9 0.0 -4,-6 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000041229 Phf8 ENSMUST00000151941 ENSMUSP00000116792 TRANSLATION protein_coding start - 3 124.0 0.0 2.33 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000041229 Phf8 ENSMUST00000141715 - NO_TRANSLATION retained_intron ENSMUSG00000041229 Phf8 ENSMUST00000046962 ENSMUSP00000041312 TRANSLATION protein_coding - CCDS30470.1 1 795.0 21.0 10.18 0.1 81.9 0.0 -4,-6 0.194 7 18.0 MINOR ENSMUSG00000041229 Phf8 ENSMUST00000112662 ENSMUSP00000108281 TRANSLATION protein_coding - CCDS30470.1 5 795.0 21.0 10.18 0.1 81.9 0.0 -4,-6 0.194 7 18.0 MINOR ENSMUSG00000041229 Phf8 ENSMUST00000138318 - NO_TRANSLATION retained_intron ENSMUSG00000031355 Arhgap6 ENSMUST00000087016 ENSMUSP00000084239 TRANSLATION protein_coding - - 1 294.0 2.0 0.4 0.0 31.6 0.0 -4,-6 0.0 7 3.152 MINOR ENSMUSG00000031355 Arhgap6 ENSMUST00000033721 ENSMUSP00000033721 TRANSLATION protein_coding - CCDS30534.1 2 987.0 0.0 2.08 2.2 162.2 0.0 -2,-5 0.6235 18 6.462 ALTERNATIVE:2 ENSMUSG00000031355 Arhgap6 ENSMUST00000112129 ENSMUSP00000107757 TRANSLATION protein_coding - - 1 385.0 0.0 1.72 0.0 132.2 0.0 -4,-6 0.0 8 4.962 MINOR ENSMUSG00000031355 Arhgap6 ENSMUST00000112127 ENSMUSP00000107755 TRANSLATION protein_coding - CCDS72472.1 1 795.0 0.0 2.08 0.1 162.2 0.0 -4,-1 0.4488 15 6.0 ALTERNATIVE:2 ENSMUSG00000031355 Arhgap6 ENSMUST00000143048 - NO_TRANSLATION retained_intron ENSMUSG00000031355 Arhgap6 ENSMUST00000139146 ENSMUSP00000134512 TRANSLATION nonsense_mediated_decay - - 1 478.0 0.0 2.08 0.0 162.2 0.0 -4,-6 0.1079 10 -2.0 MINOR ENSMUSG00000031355 Arhgap6 ENSMUST00000112131 ENSMUSP00000107759 TRANSLATION protein_coding - CCDS41212.1 1 805.0 0.0 2.08 3.6 162.2 0.0 -4,-6 1.0 15 7.0 PRINCIPAL:2 ENSMUSG00000015668 Pdzd11 ENSMUST00000059099 ENSMUSP00000051068 TRANSLATION protein_coding - CCDS30304.1 1 140.0 0.0 3.78 28.7 63.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000015668 Pdzd11 ENSMUST00000144643 - NO_TRANSLATION retained_intron ENSMUSG00000015668 Pdzd11 ENSMUST00000015812 ENSMUSP00000015812 TRANSLATION protein_coding - CCDS30304.1 1 140.0 0.0 3.78 28.7 63.4 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000015668 Pdzd11 ENSMUST00000151548 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000060673 4930595M18Rik ENSMUST00000080083 ENSMUSP00000078984 TRANSLATION protein_coding - CCDS53123.1 1 829.0 8.0 0.6 0.0 91.6 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000035776 Cd99l2 ENSMUST00000114586 ENSMUSP00000110234 TRANSLATION protein_coding - - 5 190.0 0.0 0.0 0.0 196.7 1.0 3,-2 0.0091 6 3.756 MINOR ENSMUSG00000035776 Cd99l2 ENSMUST00000114587 ENSMUSP00000110235 TRANSLATION protein_coding - - 3 216.0 0.0 0.0 1.1 216.0 1.0 2,-3 0.1179 6 4.96 MINOR ENSMUSG00000035776 Cd99l2 ENSMUST00000128515 - NO_TRANSLATION retained_intron ENSMUSG00000035776 Cd99l2 ENSMUST00000148177 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035776 Cd99l2 ENSMUST00000080035 ENSMUSP00000078944 TRANSLATION protein_coding - CCDS30179.1 1 214.0 0.0 0.0 5.4 232.8 1.0 3,-2 1.0 6 7.922 PRINCIPAL:1 ENSMUSG00000035776 Cd99l2 ENSMUST00000037391 ENSMUSP00000042606 TRANSLATION protein_coding - CCDS57761.1 1 237.0 0.0 0.0 1.1 234.1 1.0 3,-2 0.3212 6 6.046 MINOR ENSMUSG00000035427 Mageb4 ENSMUST00000113969 ENSMUSP00000109602 TRANSLATION protein_coding - CCDS30261.1 1 556.0 0.0 0.32 0.0 60.9 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000035427 Mageb4 ENSMUST00000096378 ENSMUSP00000094107 TRANSLATION protein_coding - CCDS30261.1 1 556.0 0.0 0.32 0.0 60.9 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000118438 Btbd35f8 ENSMUST00000238270 ENSMUSP00000158734 TRANSLATION protein_coding - - - 498.0 0.0 0.8 5.4 38.6 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000069038 H2al1j ENSMUST00000091180 ENSMUSP00000088719 TRANSLATION protein_coding - CCDS53011.1 - 109.0 0.0 1.0 0.0 37.7 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079638 Rhox2b ENSMUST00000115191 ENSMUSP00000110845 TRANSLATION protein_coding - CCDS53052.1 1 191.0 0.0 1.2 0.3 47.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000109156 Gm45194 ENSMUST00000207962 ENSMUSP00000147202 TRANSLATION protein_coding,RT - - 5 868.0 0.0 2.65 0.0 67.3 0.0 -4,-6 0.5404 - -2.0 PRINCIPAL:5 ENSMUSG00000109156 Gm45194 ENSMUST00000207546 ENSMUSP00000146668 TRANSLATION protein_coding stop - 5 190.0 0.0 0.9 0.0 71.9 0.0 -4,-6 0.0233 1 -2.0 ALTERNATIVE:2 ENSMUSG00000096508 Pramel3b ENSMUST00000113172 ENSMUSP00000108797 TRANSLATION protein_coding - CCDS57774.1 1 463.0 0.0 1.26 0.4 0.0 0.0 -4,-7 0.8356 - 6.0 PRINCIPAL:4 ENSMUSG00000096508 Pramel3b ENSMUST00000179953 ENSMUSP00000137277 TRANSLATION protein_coding - - 1 462.0 0.0 1.26 0.4 0.0 0.0 -4,-6 0.6807 - 6.0 ALTERNATIVE:2 ENSMUSG00000015405 Ace2 ENSMUST00000112271 ENSMUSP00000107890 TRANSLATION protein_coding - CCDS30518.1 1 805.0 4.0 16.75 5.5 1039.4 1.0 3,-2 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000015405 Ace2 ENSMUST00000131543 ENSMUSP00000123313 TRANSLATION protein_coding stop - 1 521.0 4.0 11.25 0.0 773.6 1.0 -4,-7 0.034 10 -2.0 MINOR ENSMUSG00000015405 Ace2 ENSMUST00000073973 ENSMUSP00000073626 TRANSLATION protein_coding - CCDS30518.1 1 805.0 4.0 16.75 5.5 1039.4 1.0 3,-2 1.0 21 18.0 PRINCIPAL:1 ENSMUSG00000057421 Las1l ENSMUST00000139717 - NO_TRANSLATION retained_intron ENSMUSG00000057421 Las1l ENSMUST00000126605 - NO_TRANSLATION retained_intron ENSMUSG00000057421 Las1l ENSMUST00000152181 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057421 Las1l ENSMUST00000147994 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057421 Las1l ENSMUST00000079987 ENSMUSP00000078901 TRANSLATION protein_coding - CCDS30287.1 1 759.0 0.0 1.086 0.0 142.4 0.0 -4,-5 1.0 14 8.0 PRINCIPAL:2 ENSMUSG00000057421 Las1l ENSMUST00000137659 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057421 Las1l ENSMUST00000113864 ENSMUSP00000109495 TRANSLATION protein_coding - - 5 776.0 0.0 1.086 0.0 142.4 0.0 -4,-5 0.1918 14 8.0 ALTERNATIVE:2 ENSMUSG00000041633 Kctd12b ENSMUST00000039424 ENSMUSP00000037539 TRANSLATION protein_coding - CCDS30484.1 1 292.0 0.0 0.5 3.8 58.5 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000041633 Kctd12b ENSMUST00000112572 ENSMUSP00000108191 TRANSLATION protein_coding - CCDS30484.1 1 292.0 0.0 0.5 3.8 58.5 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000095413 H2al1e ENSMUST00000178979 ENSMUSP00000136763 TRANSLATION protein_coding - CCDS40866.1 - 105.0 0.0 1.0 0.0 41.6 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000121523 ENSMUSG00000121523 ENSMUST00000249148 ENSMUSP00000159595 TRANSLATION protein_coding - - - 6688.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - 0.0 PRINCIPAL:1 ENSMUSG00000055746 Magea2 ENSMUST00000112559 ENSMUSP00000108178 TRANSLATION protein_coding - CCDS30491.1 1 320.0 0.0 0.6 0.1 25.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055746 Magea2 ENSMUST00000069477 ENSMUSP00000069832 TRANSLATION protein_coding - CCDS30491.1 5 320.0 0.0 0.6 0.1 25.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055746 Magea2 ENSMUST00000178950 ENSMUSP00000136214 TRANSLATION protein_coding - CCDS30491.1 5 320.0 0.0 0.6 0.1 25.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031378 Abcd1 ENSMUST00000114461 ENSMUSP00000110105 TRANSLATION protein_coding - - 1 504.0 2.0 0.96 0.0 338.2 4.0 -4,-1 0.0099 6 3.276 MINOR ENSMUSG00000031378 Abcd1 ENSMUST00000002084 ENSMUSP00000002084 TRANSLATION protein_coding - CCDS30210.1 1 736.0 10.0 5.71 2.2 394.7 4.0 -4,-1 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000031111 Igsf1 ENSMUST00000072037 ENSMUSP00000071919 TRANSLATION protein_coding - CCDS40966.1 1 762.0 0.0 3.39 0.0 63.6 0.0 1,-3 0.0494 2 0.942 MINOR ENSMUSG00000031111 Igsf1 ENSMUST00000114893 ENSMUSP00000110543 TRANSLATION protein_coding - CCDS40965.1 1 775.0 0.0 4.46 0.0 84.3 0.0 3,-2 0.0557 4 3.324 MINOR ENSMUSG00000031111 Igsf1 ENSMUST00000114891 ENSMUSP00000110541 TRANSLATION protein_coding - CCDS40967.1 1 232.0 0.0 1.08 0.4 31.7 0.0 1,-3 0.032 - 0.0 MINOR ENSMUSG00000031111 Igsf1 ENSMUST00000135492 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031111 Igsf1 ENSMUST00000033442 ENSMUSP00000033442 TRANSLATION protein_coding - CCDS40964.1 1 1317.0 0.0 6.89 2.1 147.9 0.0 1,-3 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000072931 Gm15080 ENSMUST00000112804 ENSMUSP00000108423 TRANSLATION protein_coding - CCDS72445.1 1 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:1 ENSMUSG00000031387 Renbp ENSMUST00000165359 ENSMUSP00000132729 TRANSLATION nonsense_mediated_decay - - 3 48.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031387 Renbp ENSMUST00000144771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031387 Renbp ENSMUST00000150241 - NO_TRANSLATION retained_intron ENSMUSG00000031387 Renbp ENSMUST00000155597 ENSMUSP00000116549 TRANSLATION protein_coding - - 5 419.0 0.0 9.33 1.2 151.9 0.0 -4,-5 0.3264 6 8.2 ALTERNATIVE:2 ENSMUSG00000031387 Renbp ENSMUST00000149130 - NO_TRANSLATION retained_intron ENSMUSG00000031387 Renbp ENSMUST00000146371 - NO_TRANSLATION retained_intron ENSMUSG00000031387 Renbp ENSMUST00000135213 - NO_TRANSLATION retained_intron ENSMUSG00000031387 Renbp ENSMUST00000135711 - NO_TRANSLATION retained_intron ENSMUSG00000031387 Renbp ENSMUST00000116578 ENSMUSP00000112277 TRANSLATION protein_coding - CCDS41015.2 1 430.0 0.0 9.33 2.0 151.9 0.0 -4,-5 1.0 6 9.0 PRINCIPAL:2 ENSMUSG00000031387 Renbp ENSMUST00000114379 ENSMUSP00000110020 TRANSLATION protein_coding - CCDS57763.1 1 416.0 0.0 8.83 0.0 121.1 0.0 -4,-5 0.0667 6 4.998 MINOR ENSMUSG00000063785 Utp14a ENSMUST00000080713 ENSMUSP00000079538 TRANSLATION protein_coding - CCDS30107.1 1 767.0 0.0 0.0 5.3 586.2 0.0 -4,-5 1.0 14 8.0 PRINCIPAL:1 ENSMUSG00000063785 Utp14a ENSMUST00000125966 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000063785 Utp14a ENSMUST00000152624 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000078213 Btbd35f4 ENSMUST00000105011 ENSMUSP00000100628 TRANSLATION protein_coding - CCDS52979.1 - 496.0 0.0 0.8 4.7 45.8 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042225 Ammecr1 ENSMUST00000041317 ENSMUSP00000036085 TRANSLATION protein_coding - CCDS30452.1 1 344.0 0.0 5.4 0.0 170.7 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000005696 Sh2d1a ENSMUST00000115070 ENSMUSP00000110722 TRANSLATION protein_coding - CCDS85770.1 1 123.0 0.0 3.25 9.1 40.0 0.0 -4,-5 0.8783 3 13.53 MINOR ENSMUSG00000005696 Sh2d1a ENSMUST00000129855 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005696 Sh2d1a ENSMUST00000189753 ENSMUSP00000141070 TRANSLATION protein_coding - CCDS30099.1 5 126.0 0.0 3.25 9.1 53.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000005696 Sh2d1a ENSMUST00000153948 ENSMUSP00000138624 TRANSLATION protein_coding start - 3 93.0 0.0 1.1 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000005696 Sh2d1a ENSMUST00000005839 ENSMUSP00000005839 TRANSLATION protein_coding - CCDS30099.1 1 126.0 0.0 3.25 9.1 53.0 0.0 -4,-5 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000005696 Sh2d1a ENSMUST00000128393 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000005696 Sh2d1a ENSMUST00000101619 - NO_TRANSLATION retained_intron ENSMUSG00000056380 Gpr50 ENSMUST00000070449 ENSMUSP00000064608 TRANSLATION protein_coding - CCDS30181.1 1 591.0 0.0 0.9 0.1 162.1 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000056380 Gpr50 ENSMUST00000144712 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000056380 Gpr50 ENSMUST00000131554 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000108981 Bend2 ENSMUST00000141946 ENSMUSP00000147222 TRANSLATION protein_coding stop - 5 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000108981 Bend2 ENSMUST00000208920 ENSMUSP00000147161 TRANSLATION protein_coding stop - 5 383.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000108981 Bend2 ENSMUST00000207320 ENSMUSP00000146912 TRANSLATION protein_coding - - 5 728.0 0.0 0.0 0.0 58.8 0.0 -4,-5 0.7673 - 6.0 PRINCIPAL:1 ENSMUSG00000108981 Bend2 ENSMUST00000207353 ENSMUSP00000147241 TRANSLATION protein_coding stop - 5 394.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0037 - -2.0 MINOR ENSMUSG00000108981 Bend2 ENSMUST00000207853 ENSMUSP00000147075 TRANSLATION protein_coding stop - 5 375.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0022 - -2.0 MINOR ENSMUSG00000108981 Bend2 ENSMUST00000207800 ENSMUSP00000147245 TRANSLATION protein_coding stop - 5 529.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0065 - -2.0 MINOR ENSMUSG00000108981 Bend2 ENSMUST00000208374 - NO_TRANSLATION retained_intron ENSMUSG00000121526 ENSMUSG00000121526 ENSMUST00000249151 ENSMUSP00000159598 TRANSLATION protein_coding stop - - 3720.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - -2.0 PRINCIPAL:1 ENSMUSG00000073267 Gm1993 ENSMUST00000120268 ENSMUSP00000112650 TRANSLATION protein_coding - CCDS53023.1 5 212.0 0.0 2.5 0.0 38.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033343 Magea4 ENSMUST00000048675 ENSMUSP00000046715 TRANSLATION protein_coding stop CCDS30185.1 - 315.0 0.0 0.6 0.1 31.0 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000072944 Nup62cl ENSMUST00000133780 ENSMUSP00000116491 TRANSLATION protein_coding stop - 3 169.0 0.0 2.475 0.0 108.5 0.0 -4,-6 0.0083 - -2.0 MINOR ENSMUSG00000072944 Nup62cl ENSMUST00000101212 ENSMUSP00000098772 TRANSLATION protein_coding - CCDS53206.1 1 272.0 0.0 4.605 1.5 111.0 0.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000072944 Nup62cl ENSMUST00000125678 ENSMUSP00000116128 TRANSLATION protein_coding stop - 5 97.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000072944 Nup62cl ENSMUST00000124075 ENSMUSP00000122713 TRANSLATION protein_coding stop - 3 60.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000072944 Nup62cl ENSMUST00000154385 ENSMUSP00000121310 TRANSLATION protein_coding stop - 3 228.0 0.0 3.805 0.0 111.0 0.0 -4,-6 0.0033 - -2.0 MINOR ENSMUSG00000067909 Slxl1 ENSMUST00000088740 ENSMUSP00000086118 TRANSLATION protein_coding - CCDS53074.1 1 155.0 0.0 1.75 0.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044597 Mycs ENSMUST00000058404 ENSMUSP00000054158 TRANSLATION protein_coding - CCDS29953.1 - 431.0 0.0 0.4 0.4 432.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031241 Tbx22 ENSMUST00000168174 ENSMUSP00000128247 TRANSLATION protein_coding - CCDS30351.2 2 531.0 0.0 4.63 0.1 260.1 0.0 -3,-5 0.3709 - 8.0 ALTERNATIVE:2 ENSMUSG00000031241 Tbx22 ENSMUST00000168403 ENSMUSP00000127321 TRANSLATION protein_coding - CCDS72420.1 1 315.0 0.0 1.75 0.0 95.4 0.0 -4,-5 0.0084 - 0.24 MINOR ENSMUSG00000031241 Tbx22 ENSMUST00000068451 ENSMUSP00000063611 TRANSLATION protein_coding - CCDS72420.1 1 315.0 0.0 1.75 0.0 95.4 0.0 -4,-5 0.0084 - 0.24 MINOR ENSMUSG00000031241 Tbx22 ENSMUST00000118986 ENSMUSP00000112544 TRANSLATION protein_coding - CCDS30350.1 5 517.0 0.0 4.63 2.5 260.1 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000031241 Tbx22 ENSMUST00000172682 ENSMUSP00000133607 TRANSLATION nonsense_mediated_decay - - 3 82.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000019359 Gdpd2 ENSMUST00000019503 ENSMUSP00000019503 TRANSLATION protein_coding - CCDS30306.1 1 539.0 5.0 12.48 14.0 81.2 6.0 -4,-7 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000019359 Gdpd2 ENSMUST00000144912 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019359 Gdpd2 ENSMUST00000151572 - NO_TRANSLATION retained_intron ENSMUSG00000019359 Gdpd2 ENSMUST00000156336 - NO_TRANSLATION retained_intron ENSMUSG00000019359 Gdpd2 ENSMUST00000113744 ENSMUSP00000109373 TRANSLATION protein_coding - CCDS30306.1 1 539.0 5.0 12.48 14.0 81.2 6.0 -4,-7 1.0 5 21.0 PRINCIPAL:1 ENSMUSG00000031089 Slc6a14 ENSMUST00000033414 ENSMUSP00000033414 TRANSLATION protein_coding - CCDS30051.1 1 638.0 0.0 13.0 13.1 651.4 0.0 -4,-7 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031374 Zfp92 ENSMUST00000086470 ENSMUSP00000083661 TRANSLATION protein_coding - CCDS81135.1 1 375.0 27.0 1.34 0.0 220.5 0.0 -4,-6 0.0369 - 9.318 MINOR ENSMUSG00000031374 Zfp92 ENSMUST00000033740 ENSMUSP00000033740 TRANSLATION protein_coding - CCDS30200.1 1 488.0 35.0 1.62 0.4 259.0 0.0 -4,-6 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000094945 Rhox4a2 ENSMUST00000179915 ENSMUSP00000136542 TRANSLATION protein_coding - - 1 205.0 0.0 1.7 0.0 39.6 0.0 -4,-5 0.7698 - 12.0 PRINCIPAL:1 ENSMUSG00000109858 Pfn5 ENSMUST00000210331 ENSMUSP00000148168 TRANSLATION protein_coding - - - 152.0 0.0 1.0 6.0 60.9 0.0 -4,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000034457 Eda2r ENSMUST00000113832 ENSMUSP00000109463 TRANSLATION protein_coding - CCDS30293.1 1 297.0 0.0 0.0 4.9 52.3 1.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000034457 Eda2r ENSMUST00000126283 - NO_TRANSLATION retained_intron ENSMUSG00000034457 Eda2r ENSMUST00000126609 - NO_TRANSLATION retained_intron ENSMUSG00000034457 Eda2r ENSMUST00000037353 ENSMUSP00000041210 TRANSLATION protein_coding - CCDS30293.1 1 297.0 0.0 0.0 4.9 52.3 1.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000118431 Btbd35f25 ENSMUST00000238772 ENSMUSP00000158683 TRANSLATION protein_coding - - - 498.0 0.0 0.8 5.4 40.8 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025333 Gpr143 ENSMUST00000139310 - NO_TRANSLATION retained_intron ENSMUSG00000025333 Gpr143 ENSMUST00000151819 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025333 Gpr143 ENSMUST00000026383 ENSMUSP00000026383 TRANSLATION protein_coding - CCDS30476.1 1 405.0 0.0 0.0 5.3 739.7 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000055733 Nap1l3 ENSMUST00000079490 ENSMUSP00000078453 TRANSLATION protein_coding - CCDS30372.1 - 544.0 0.0 0.0 0.0 302.9 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000031433 Rbm41 ENSMUST00000033810 ENSMUSP00000033810 TRANSLATION protein_coding - CCDS41147.1 1 413.0 0.0 2.0 8.4 33.1 0.0 -4,-5 0.9378 - 10.706 ALTERNATIVE:1 ENSMUSG00000031433 Rbm41 ENSMUST00000148703 - NO_TRANSLATION retained_intron ENSMUSG00000031433 Rbm41 ENSMUST00000087400 ENSMUSP00000084662 TRANSLATION protein_coding - CCDS53205.1 1 404.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0193 - 3.0 MINOR ENSMUSG00000031433 Rbm41 ENSMUST00000113011 ENSMUSP00000108634 TRANSLATION protein_coding - CCDS72439.1 1 437.0 0.0 2.0 9.2 33.1 0.0 -4,-5 1.0 - 11.0 PRINCIPAL:4 ENSMUSG00000031433 Rbm41 ENSMUST00000113007 ENSMUSP00000108631 TRANSLATION protein_coding - CCDS53204.1 1 425.0 0.0 2.0 0.0 33.1 0.0 -3,-6 0.2435 - 8.0 MINOR ENSMUSG00000031433 Rbm41 ENSMUST00000135126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031433 Rbm41 ENSMUST00000138635 - NO_TRANSLATION retained_intron ENSMUSG00000046449 Nexmif ENSMUST00000118314 ENSMUSP00000113625 TRANSLATION protein_coding - - 1 1485.0 0.0 0.0 2.0 386.1 0.0 -4,-5 0.3206 2 6.399 MINOR ENSMUSG00000046449 Nexmif ENSMUST00000087879 ENSMUSP00000085187 TRANSLATION protein_coding - CCDS53166.1 1 1515.0 0.0 0.0 8.5 386.1 0.0 -4,-5 1.0 2 9.0 PRINCIPAL:1 ENSMUSG00000046449 Nexmif ENSMUST00000056502 ENSMUSP00000049716 TRANSLATION protein_coding - - 1 1485.0 0.0 0.0 2.0 386.1 0.0 -4,-5 0.3206 2 6.399 MINOR ENSMUSG00000091497 Mageb11 ENSMUST00000172155 ENSMUSP00000129722 TRANSLATION protein_coding - CCDS53130.1 - 330.0 0.0 1.0 0.0 29.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095741 Rhox2f ENSMUST00000184546 ENSMUSP00000139352 TRANSLATION protein_coding start - 5 91.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095741 Rhox2f ENSMUST00000115173 ENSMUSP00000110827 TRANSLATION protein_coding - CCDS53057.1 5 191.0 0.0 1.5 0.3 49.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031145 Prickle3 ENSMUST00000141876 - NO_TRANSLATION retained_intron ENSMUSG00000031145 Prickle3 ENSMUST00000153994 - NO_TRANSLATION retained_intron ENSMUSG00000031145 Prickle3 ENSMUST00000123172 - NO_TRANSLATION retained_intron ENSMUSG00000031145 Prickle3 ENSMUST00000033485 ENSMUSP00000033485 TRANSLATION protein_coding - CCDS72329.1 1 624.0 23.0 5.2 0.0 224.7 0.0 -4,-2 0.3829 4 14.0 ALTERNATIVE:2 ENSMUSG00000031145 Prickle3 ENSMUST00000129662 ENSMUSP00000127892 TRANSLATION protein_coding - - 2 556.0 23.0 5.2 0.1 224.7 0.0 -4,-5 0.7947 4 14.0 PRINCIPAL:2 ENSMUSG00000083616 H2ab3 ENSMUST00000122050 ENSMUSP00000138211 TRANSLATION protein_coding - CCDS59774.1 - 115.0 0.0 1.0 2.3 0.0 0.0 -4,-1 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000035246 Pcyt1b ENSMUST00000045898 ENSMUSP00000044280 TRANSLATION protein_coding - CCDS30274.1 1 369.0 0.0 5.35 23.7 110.8 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000035246 Pcyt1b ENSMUST00000113933 ENSMUSP00000109566 TRANSLATION protein_coding - CCDS41061.1 1 339.0 0.0 5.35 0.0 110.8 0.0 -4,-5 0.1359 5 12.0 MINOR ENSMUSG00000035246 Pcyt1b ENSMUST00000146263 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034607 Pof1b ENSMUST00000039887 ENSMUSP00000047655 TRANSLATION protein_coding - CCDS30362.1 1 587.0 0.0 0.0 5.6 0.0 0.0 -4,-5 1.0 23 2.0 PRINCIPAL:1 ENSMUSG00000095770 Gm21637 ENSMUST00000105124 ENSMUSP00000100756 TRANSLATION protein_coding - CCDS57740.1 - 236.0 0.0 1.0 0.1 216.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031312 Itgb1bp2 ENSMUST00000033674 ENSMUSP00000033674 TRANSLATION protein_coding - CCDS41079.1 1 350.0 16.0 2.9 10.0 227.7 0.0 -4,-5 1.0 4 21.0 PRINCIPAL:1 ENSMUSG00000031312 Itgb1bp2 ENSMUST00000143946 - NO_TRANSLATION retained_intron ENSMUSG00000031285 Dcx ENSMUST00000033642 ENSMUSP00000033642 TRANSLATION protein_coding - CCDS53209.1 1 366.0 0.0 3.0 20.3 144.7 0.0 -4,-6 0.9832 6 12.0 ALTERNATIVE:1 ENSMUSG00000031285 Dcx ENSMUST00000139920 - NO_TRANSLATION retained_intron ENSMUSG00000031285 Dcx ENSMUST00000087313 ENSMUSP00000084570 TRANSLATION protein_coding - CCDS53209.1 1 366.0 0.0 3.0 20.3 144.7 0.0 -4,-6 0.9832 6 12.0 ALTERNATIVE:1 ENSMUSG00000031285 Dcx ENSMUST00000112851 ENSMUSP00000108472 TRANSLATION protein_coding - CCDS53210.1 1 365.0 0.0 3.0 20.3 144.7 0.0 -4,-6 0.9838 6 12.0 ALTERNATIVE:1 ENSMUSG00000031285 Dcx ENSMUST00000125768 - NO_TRANSLATION retained_intron ENSMUSG00000031285 Dcx ENSMUST00000112856 ENSMUSP00000108477 TRANSLATION protein_coding - CCDS41157.1 1 360.0 0.0 3.0 20.3 144.7 0.0 -4,-6 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000045237 Eola1 ENSMUST00000053981 ENSMUSP00000052765 TRANSLATION protein_coding - CCDS30174.1 1 157.0 0.0 2.0 8.8 22.5 0.0 -4,-2 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000118409 Btbd35f5 ENSMUST00000178747 ENSMUSP00000136615 TRANSLATION protein_coding - CCDS53040.1 - 498.0 0.0 0.8 5.4 40.8 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000036022 Pabir2 ENSMUST00000114838 ENSMUSP00000110487 TRANSLATION protein_coding - CCDS53070.1 1 255.0 0.0 1.0 5.1 0.0 0.0 -4,-5 0.8665 1 8.0 ALTERNATIVE:1 ENSMUSG00000036022 Pabir2 ENSMUST00000114841 ENSMUSP00000110490 TRANSLATION protein_coding - CCDS53069.1 1 230.0 0.0 1.0 4.9 0.0 0.0 -4,-5 0.736 1 7.902 ALTERNATIVE:1 ENSMUSG00000036022 Pabir2 ENSMUST00000143069 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036022 Pabir2 ENSMUST00000071023 ENSMUSP00000069112 TRANSLATION protein_coding - CCDS30129.1 1 256.0 0.0 1.0 5.1 0.0 0.0 -4,-5 1.0 1 8.0 PRINCIPAL:4 ENSMUSG00000015340 Cybb ENSMUST00000015484 ENSMUSP00000015484 TRANSLATION protein_coding - CCDS30010.1 1 570.0 0.0 12.33 24.8 108.9 7.0 -1,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000015340 Cybb ENSMUST00000154503 - NO_TRANSLATION retained_intron ENSMUSG00000015340 Cybb ENSMUST00000131591 - NO_TRANSLATION retained_intron ENSMUSG00000015340 Cybb ENSMUST00000164685 ENSMUSP00000128963 TRANSLATION nonsense_mediated_decay - - 5 114.0 0.0 3.33 0.0 0.0 4.0 -1,-5 0.0023 1 -2.0 MINOR ENSMUSG00000015340 Cybb ENSMUST00000170885 ENSMUSP00000128993 TRANSLATION protein_coding stop - 3 93.0 0.0 2.58 0.0 0.0 4.0 -1,-5 0.0023 1 -2.0 MINOR ENSMUSG00000042750 Bex2 ENSMUST00000049130 ENSMUSP00000043113 TRANSLATION protein_coding - CCDS30413.1 1 129.0 0.0 0.0 9.1 69.1 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000031314 Taf1 ENSMUST00000118878 ENSMUSP00000112772 TRANSLATION protein_coding - - 5 1870.0 0.0 14.7875 2.9 817.8 0.0 -4,-5 0.9532 8 9.0 ALTERNATIVE:2 ENSMUSG00000031314 Taf1 ENSMUST00000101341 ENSMUSP00000098895 TRANSLATION protein_coding - - 2 1902.0 0.0 14.7875 0.0 817.8 0.0 -4,-5 0.3793 8 8.0 ALTERNATIVE:2 ENSMUSG00000031314 Taf1 ENSMUST00000129487 - NO_TRANSLATION retained_intron ENSMUSG00000031314 Taf1 ENSMUST00000143908 ENSMUSP00000138159 TRANSLATION nonsense_mediated_decay - - 5 1733.0 0.0 14.7875 0.0 817.8 0.0 -4,-5 0.3251 8 -2.0 MINOR ENSMUSG00000031314 Taf1 ENSMUST00000140470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031314 Taf1 ENSMUST00000149274 ENSMUSP00000114765 TRANSLATION protein_coding - CCDS85793.1 5 1893.0 0.0 14.7875 2.9 817.8 0.0 -4,-5 1.0 8 9.0 PRINCIPAL:4 ENSMUSG00000031314 Taf1 ENSMUST00000211461 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001964 Emd ENSMUST00000002029 ENSMUSP00000002029 TRANSLATION protein_coding - CCDS30222.1 1 259.0 0.0 1.83 10.3 58.3 1.0 -4,-5 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000001964 Emd ENSMUST00000152288 ENSMUSP00000115890 TRANSLATION nonsense_mediated_decay - - 5 65.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000001964 Emd ENSMUST00000096424 ENSMUSP00000094158 TRANSLATION protein_coding - - 5 223.0 0.0 0.83 0.0 27.1 1.0 -4,-5 0.0031 10 5.514 MINOR ENSMUSG00000001964 Emd ENSMUST00000088313 ENSMUSP00000094133 TRANSLATION protein_coding - - 2 158.0 0.0 1.83 0.0 58.3 0.0 -4,-5 0.011 8 12.0 MINOR ENSMUSG00000001964 Emd ENSMUST00000129516 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001964 Emd ENSMUST00000119197 ENSMUSP00000112639 TRANSLATION protein_coding - - 3 170.0 0.0 1.83 0.0 58.3 0.0 -4,-5 0.011 6 12.0 MINOR ENSMUSG00000031216 Stard8 ENSMUST00000127361 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031216 Stard8 ENSMUST00000036606 ENSMUSP00000044491 TRANSLATION protein_coding - CCDS30297.1 1 1019.0 0.0 5.8 2.6 305.2 0.0 -4,-5 1.0 7 13.0 PRINCIPAL:1 ENSMUSG00000031216 Stard8 ENSMUST00000145820 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031216 Stard8 ENSMUST00000149999 ENSMUSP00000114897 TRANSLATION protein_coding stop - 3 57.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031212 Pgr15l ENSMUST00000033556 ENSMUSP00000033556 TRANSLATION protein_coding - CCDS30292.1 1 456.0 0.0 3.8 0.1 166.6 0.0 -4,-6 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000121528 ENSMUSG00000121528 ENSMUST00000249153 ENSMUSP00000159600 TRANSLATION protein_coding - - - 7581.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - 0.0 PRINCIPAL:1 ENSMUSG00000051851 Rtl8c ENSMUST00000063384 ENSMUSP00000069901 TRANSLATION protein_coding - CCDS40975.1 - 112.0 0.0 1.0 8.0 200.6 0.0 -4,-7 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000055691 Gja6 ENSMUST00000069417 ENSMUSP00000069187 TRANSLATION protein_coding - CCDS30506.1 1 283.0 0.0 0.3 0.4 294.7 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031099 Smarca1 ENSMUST00000140756 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031099 Smarca1 ENSMUST00000088973 ENSMUSP00000086366 TRANSLATION protein_coding - CCDS30104.1 1 1046.0 7.0 17.908 2.2 346.1 0.0 -4,-5 0.5662 7 18.5 MINOR ENSMUSG00000031099 Smarca1 ENSMUST00000141084 ENSMUSP00000135570 TRANSLATION protein_coding - - 2 381.0 7.0 4.998 0.0 188.4 0.0 -4,-5 0.0 3 6.0 MINOR ENSMUSG00000031099 Smarca1 ENSMUST00000077569 ENSMUSP00000076769 TRANSLATION protein_coding - CCDS30104.1 1 1046.0 7.0 17.908 2.2 346.1 0.0 -4,-5 0.5662 7 18.5 MINOR ENSMUSG00000031099 Smarca1 ENSMUST00000153548 ENSMUSP00000114296 TRANSLATION protein_coding stop - 5 768.0 7.0 11.203 0.0 337.3 0.0 -4,-5 0.0206 5 -2.0 MINOR ENSMUSG00000031099 Smarca1 ENSMUST00000101616 ENSMUSP00000099138 TRANSLATION protein_coding - CCDS72374.1 1 1062.0 7.0 17.908 5.8 346.1 0.0 -4,-5 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000031099 Smarca1 ENSMUST00000153587 ENSMUSP00000116209 TRANSLATION protein_coding stop - 3 117.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000055109 Gm15155 ENSMUST00000112542 ENSMUSP00000108161 TRANSLATION protein_coding - - 1 138.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5812 - 0.0 PRINCIPAL:1 ENSMUSG00000055109 Gm15155 ENSMUST00000128838 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000059334 Zfp36l3 ENSMUST00000071711 ENSMUSP00000071630 TRANSLATION protein_coding - CCDS30138.1 - 725.0 8.0 0.0 0.0 68.1 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000118429 Btbd35f9 ENSMUST00000238632 ENSMUSP00000158591 TRANSLATION protein_coding - - - 498.0 0.0 0.8 5.4 41.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000079513 Ppp4r3c2 ENSMUST00000113958 ENSMUSP00000109591 TRANSLATION protein_coding - CCDS41053.1 1 785.0 0.0 0.0 0.1 209.4 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000089768 Tmsb15b1 ENSMUST00000113071 ENSMUSP00000108694 TRANSLATION protein_coding - CCDS41139.1 2 45.0 0.0 1.33 26.0 69.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000037167 Spaca5 ENSMUST00000040437 ENSMUSP00000048721 TRANSLATION protein_coding - CCDS40888.1 5 160.0 12.0 3.75 0.4 140.0 0.0 4,-1 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000046269 Usp27x ENSMUST00000115744 ENSMUSP00000111409 TRANSLATION protein_coding - CCDS52983.1 - 438.0 11.0 0.198 4.0 187.6 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000046269 Usp27x ENSMUST00000178293 ENSMUSP00000137509 TRANSLATION nonsense_mediated_decay - CCDS52983.1 2 438.0 11.0 0.198 4.0 187.6 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000046269 Usp27x ENSMUST00000191497 ENSMUSP00000139402 TRANSLATION protein_coding - CCDS52983.1 2 438.0 11.0 0.198 4.0 187.6 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000048970 C1galt1c1 ENSMUST00000058265 ENSMUSP00000059224 TRANSLATION protein_coding - CCDS30095.1 1 316.0 0.0 1.0 24.3 0.0 0.0 -4,-7 1.0 6 10.0 PRINCIPAL:1 ENSMUSG00000067764 Xlr5c ENSMUST00000114503 ENSMUSP00000110147 TRANSLATION protein_coding - - 1 236.0 0.0 4.75 0.4 127.0 0.0 -4,-5 0.7377 - 12.0 PRINCIPAL:1 ENSMUSG00000067764 Xlr5c ENSMUST00000088450 ENSMUSP00000085796 TRANSLATION protein_coding - CCDS30198.1 1 179.0 0.0 3.0 0.3 104.0 0.0 -4,-5 0.0029 - 7.122 MINOR ENSMUSG00000000266 Mid2 ENSMUST00000112988 ENSMUSP00000108612 TRANSLATION protein_coding - - 5 715.0 21.0 5.1 9.1 118.2 0.0 -4,-7 0.3732 15 16.124 MINOR ENSMUSG00000000266 Mid2 ENSMUST00000112990 ENSMUSP00000108614 TRANSLATION protein_coding - - 5 685.0 21.0 6.1 17.1 149.7 0.0 -4,-7 0.8834 15 22.0 PRINCIPAL:1 ENSMUSG00000000266 Mid2 ENSMUST00000112993 ENSMUSP00000108617 TRANSLATION protein_coding - CCDS41151.1 1 685.0 21.0 6.1 17.1 149.7 0.0 -4,-7 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000000266 Mid2 ENSMUST00000128809 ENSMUSP00000123221 TRANSLATION protein_coding stop - 5 219.0 21.0 0.6 0.0 73.9 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000000266 Mid2 ENSMUST00000140144 - NO_TRANSLATION retained_intron ENSMUSG00000031384 Asb9 ENSMUST00000033756 ENSMUSP00000033756 TRANSLATION protein_coding - CCDS30524.1 1 290.0 0.0 6.2 9.4 125.1 0.0 -4,-6 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000042425 Frmpd3 ENSMUST00000044702 - NO_TRANSLATION retained_intron ENSMUSG00000042425 Frmpd3 ENSMUST00000208130 ENSMUSP00000146983 TRANSLATION protein_coding - CCDS85809.1 5 1774.0 0.0 8.99 0.4 98.0 0.0 -4,-5 1.0 19 12.0 PRINCIPAL:1 ENSMUSG00000042425 Frmpd3 ENSMUST00000141660 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041476 Smpx ENSMUST00000132805 - NO_TRANSLATION retained_intron ENSMUSG00000041476 Smpx ENSMUST00000147283 ENSMUSP00000120412 TRANSLATION nonsense_mediated_decay - - 3 51.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000041476 Smpx ENSMUST00000112520 ENSMUSP00000108139 TRANSLATION protein_coding - CCDS41190.1 5 85.0 0.0 0.75 30.9 149.8 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000041476 Smpx ENSMUST00000136141 ENSMUSP00000119573 TRANSLATION protein_coding stop - 3 13.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041476 Smpx ENSMUST00000190091 ENSMUSP00000140268 TRANSLATION protein_coding - CCDS41190.1 1 85.0 0.0 0.75 30.9 149.8 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000041476 Smpx ENSMUST00000112521 ENSMUSP00000108140 TRANSLATION protein_coding - CCDS41190.1 1 85.0 0.0 0.75 30.9 149.8 0.0 -4,-7 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000041476 Smpx ENSMUST00000126418 - NO_TRANSLATION retained_intron ENSMUSG00000041476 Smpx ENSMUST00000038007 ENSMUSP00000048522 TRANSLATION nonsense_mediated_decay - CCDS41190.1 1 85.0 0.0 0.75 30.9 149.8 0.0 -4,-7 1.0 4 -2.0 MINOR ENSMUSG00000040586 Ofd1 ENSMUST00000049501 ENSMUSP00000041744 TRANSLATION protein_coding - CCDS53248.1 1 1019.0 0.0 5.6 0.0 53.1 0.0 -4,-6 1.0 12 12.0 PRINCIPAL:1 ENSMUSG00000033737 Fndc3c1 ENSMUST00000138724 ENSMUSP00000116843 TRANSLATION protein_coding stop - 5 88.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033737 Fndc3c1 ENSMUST00000140707 ENSMUSP00000118896 TRANSLATION protein_coding stop - 3 84.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000033737 Fndc3c1 ENSMUST00000151745 - NO_TRANSLATION retained_intron ENSMUSG00000033737 Fndc3c1 ENSMUST00000039447 ENSMUSP00000038678 TRANSLATION protein_coding - CCDS30342.1 1 1356.0 0.0 11.23 0.0 173.7 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000033737 Fndc3c1 ENSMUST00000149331 ENSMUSP00000121226 TRANSLATION protein_coding stop - 3 96.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000033737 Fndc3c1 ENSMUST00000137507 - NO_TRANSLATION retained_intron ENSMUSG00000033737 Fndc3c1 ENSMUST00000127796 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094558 Btbd35f11 ENSMUST00000105020 ENSMUSP00000100637 TRANSLATION protein_coding - CCDS40823.1 - 498.0 0.0 0.8 5.4 41.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042271 Nxt2 ENSMUST00000112914 ENSMUSP00000108536 TRANSLATION protein_coding - CCDS41155.1 1 142.0 0.0 3.08 32.7 103.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000042271 Nxt2 ENSMUST00000112913 ENSMUSP00000108535 TRANSLATION protein_coding - CCDS72441.1 3 114.0 0.0 2.33 12.7 85.2 0.0 -4,-7 0.258 - 10.902 MINOR ENSMUSG00000042271 Nxt2 ENSMUST00000138877 - NO_TRANSLATION retained_intron ENSMUSG00000042271 Nxt2 ENSMUST00000112916 ENSMUSP00000108538 TRANSLATION protein_coding - CCDS72440.1 3 198.0 0.0 3.08 3.5 103.1 0.0 -4,-6 0.2341 - 12.316 MINOR ENSMUSG00000042271 Nxt2 ENSMUST00000042329 ENSMUSP00000048221 TRANSLATION protein_coding - CCDS41155.1 2 142.0 0.0 3.08 32.7 103.1 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000094759 Gm10487 ENSMUST00000180344 ENSMUSP00000136976 TRANSLATION protein_coding - CCDS53034.1 1 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094759 Gm10487 ENSMUST00000177566 ENSMUSP00000136994 TRANSLATION protein_coding - CCDS53034.1 5 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000001127 Araf ENSMUST00000001155 ENSMUSP00000001155 TRANSLATION protein_coding - CCDS40886.1 1 604.0 23.0 11.526 9.8 333.5 0.0 -4,-7 1.0 14 21.0 PRINCIPAL:1 ENSMUSG00000001127 Araf ENSMUST00000128250 ENSMUSP00000119544 TRANSLATION protein_coding start - 3 203.0 3.0 5.25 0.0 122.4 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000001127 Araf ENSMUST00000150190 - NO_TRANSLATION retained_intron ENSMUSG00000001127 Araf ENSMUST00000148032 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001127 Araf ENSMUST00000152955 - NO_TRANSLATION retained_intron ENSMUSG00000001127 Araf ENSMUST00000123219 - NO_TRANSLATION retained_intron ENSMUSG00000001127 Araf ENSMUST00000136451 ENSMUSP00000115793 TRANSLATION nonsense_mediated_decay - - 1 419.0 15.0 4.946 0.0 153.9 0.0 -4,-5 0.0 15 -2.0 MINOR ENSMUSG00000001127 Araf ENSMUST00000122850 ENSMUSP00000114846 TRANSLATION protein_coding stop - 5 230.0 7.0 3.946 0.0 129.7 0.0 -4,-7 0.0 7 -2.0 MINOR ENSMUSG00000001127 Araf ENSMUST00000122312 ENSMUSP00000112521 TRANSLATION protein_coding - CCDS53016.1 1 186.0 7.0 3.8 1.1 129.7 0.0 -4,-7 0.0138 6 0.033 MINOR ENSMUSG00000001127 Araf ENSMUST00000120356 ENSMUSP00000112513 TRANSLATION protein_coding - CCDS53016.1 1 186.0 7.0 3.8 1.1 129.7 0.0 -4,-7 0.0138 6 0.033 MINOR ENSMUSG00000050232 Cxcr3 ENSMUST00000056614 ENSMUSP00000052444 TRANSLATION protein_coding - CCDS30319.1 1 367.0 0.0 1.0 7.7 177.5 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073007 Tent5d ENSMUST00000144695 ENSMUSP00000119588 TRANSLATION protein_coding stop - 3 29.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073007 Tent5d ENSMUST00000167154 ENSMUSP00000129483 TRANSLATION protein_coding - CCDS53172.1 3 390.0 0.0 2.75 9.4 508.9 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000073007 Tent5d ENSMUST00000143975 ENSMUSP00000122208 TRANSLATION protein_coding stop - 3 82.0 0.0 1.75 0.0 85.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000073007 Tent5d ENSMUST00000101292 ENSMUSP00000098850 TRANSLATION protein_coding - CCDS53172.1 1 390.0 0.0 2.75 9.4 508.9 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000090110 Cmc4 ENSMUST00000120286 ENSMUSP00000112753 TRANSLATION protein_coding - CCDS41030.1 2 68.0 0.0 1.75 15.9 67.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000090110 Cmc4 ENSMUST00000033543 ENSMUSP00000033543 TRANSLATION protein_coding - CCDS41030.1 1 68.0 0.0 1.75 15.9 67.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000090110 Cmc4 ENSMUST00000149863 ENSMUSP00000117381 TRANSLATION protein_coding - CCDS41030.1 3 68.0 0.0 1.75 15.9 67.8 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000044550 Tceal3 ENSMUST00000145648 ENSMUSP00000123502 TRANSLATION protein_coding stop - 3 4.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0006 - -2.0 MINOR ENSMUSG00000044550 Tceal3 ENSMUST00000125067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044550 Tceal3 ENSMUST00000128040 ENSMUSP00000117087 TRANSLATION protein_coding stop - 5 176.0 0.0 0.2 0.0 127.3 0.0 -4,-5 0.0403 - -2.0 MINOR ENSMUSG00000044550 Tceal3 ENSMUST00000060904 ENSMUSP00000059401 TRANSLATION protein_coding - CCDS30420.1 1 200.0 0.0 0.2 6.2 127.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000044550 Tceal3 ENSMUST00000153780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044550 Tceal3 ENSMUST00000138047 ENSMUSP00000114903 TRANSLATION protein_coding stop - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000044550 Tceal3 ENSMUST00000113100 ENSMUSP00000108724 TRANSLATION protein_coding - CCDS30420.1 1 200.0 0.0 0.2 6.2 127.3 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000072923 Gm10439 ENSMUST00000101181 ENSMUSP00000098741 TRANSLATION protein_coding - CCDS41170.1 5 433.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:1 ENSMUSG00000067768 Xlr4b ENSMUST00000142237 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067768 Xlr4b ENSMUST00000127701 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067768 Xlr4b ENSMUST00000114506 ENSMUSP00000110151 TRANSLATION protein_coding stop - 3 160.0 0.0 3.0 0.0 110.8 0.0 -4,-6 0.0021 - -2.0 MINOR ENSMUSG00000067768 Xlr4b ENSMUST00000081827 ENSMUSP00000080511 TRANSLATION protein_coding - CCDS41010.1 5 215.0 0.0 4.75 0.1 129.5 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067768 Xlr4b ENSMUST00000069103 ENSMUSP00000066171 TRANSLATION protein_coding - CCDS41010.1 2 215.0 0.0 4.75 0.1 129.5 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067768 Xlr4b ENSMUST00000069077 ENSMUSP00000064686 TRANSLATION protein_coding - CCDS41010.1 1 215.0 0.0 4.75 0.1 129.5 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067768 Xlr4b ENSMUST00000156188 ENSMUSP00000116105 TRANSLATION protein_coding stop - 3 192.0 0.0 4.0 0.0 129.5 0.0 -4,-6 0.002 - -2.0 MINOR ENSMUSG00000067768 Xlr4b ENSMUST00000124904 - NO_TRANSLATION retained_intron ENSMUSG00000096194 Btbd35f2 ENSMUST00000179991 ENSMUSP00000136429 TRANSLATION protein_coding - CCDS53038.1 - 498.0 0.0 0.8 5.4 40.8 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031403 Dkc1 ENSMUST00000135389 - NO_TRANSLATION retained_intron ENSMUSG00000031403 Dkc1 ENSMUST00000140609 ENSMUSP00000117706 TRANSLATION nonsense_mediated_decay start - 5 184.0 1.0 3.2 0.0 156.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031403 Dkc1 ENSMUST00000151327 - NO_TRANSLATION retained_intron ENSMUSG00000031403 Dkc1 ENSMUST00000131155 ENSMUSP00000120441 TRANSLATION protein_coding stop - 5 260.0 2.0 6.36 0.0 174.0 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000031403 Dkc1 ENSMUST00000154936 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031403 Dkc1 ENSMUST00000137286 - NO_TRANSLATION retained_intron ENSMUSG00000031403 Dkc1 ENSMUST00000154422 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031403 Dkc1 ENSMUST00000132000 ENSMUSP00000121957 TRANSLATION protein_coding stop - 3 145.0 1.0 2.45 0.0 108.7 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031403 Dkc1 ENSMUST00000033776 ENSMUSP00000033776 TRANSLATION protein_coding - CCDS41029.1 1 509.0 2.0 10.61 0.3 314.9 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000031403 Dkc1 ENSMUST00000145222 - NO_TRANSLATION retained_intron ENSMUSG00000031403 Dkc1 ENSMUST00000131867 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031403 Dkc1 ENSMUST00000153844 ENSMUSP00000121253 TRANSLATION nonsense_mediated_decay start - 5 74.0 0.0 1.83 0.0 0.0 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000079480 Pin4 ENSMUST00000144367 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079480 Pin4 ENSMUST00000113627 ENSMUSP00000109257 TRANSLATION protein_coding - CCDS41082.1 1 131.0 3.0 2.6 14.2 0.0 0.0 -4,-5 1.0 5 13.0 PRINCIPAL:1 ENSMUSG00000048621 Gm6377 ENSMUST00000060013 ENSMUSP00000049931 TRANSLATION protein_coding - CCDS30354.1 1 303.0 0.0 0.0 3.1 365.3 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000048621 Gm6377 ENSMUST00000139259 ENSMUSP00000118524 TRANSLATION protein_coding stop - 3 83.0 0.0 0.0 0.0 127.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000006200 Rhox6 ENSMUST00000006362 ENSMUSP00000006362 TRANSLATION protein_coding - CCDS30080.1 1 227.0 0.0 1.5 0.1 64.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071726 Gm5941 ENSMUST00000096371 ENSMUSP00000094099 TRANSLATION protein_coding - - 1 117.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000023074 Mospd1 ENSMUST00000023836 ENSMUSP00000023836 TRANSLATION protein_coding - CCDS30131.1 1 214.0 0.0 2.75 30.2 64.7 2.0 -4,-6 1.0 6 12.0 PRINCIPAL:4 ENSMUSG00000023074 Mospd1 ENSMUST00000096447 ENSMUSP00000094182 TRANSLATION protein_coding - CCDS72381.1 1 213.0 0.0 2.75 30.2 64.7 2.0 -4,-6 0.9876 6 12.0 ALTERNATIVE:1 ENSMUSG00000023074 Mospd1 ENSMUST00000152743 ENSMUSP00000129567 TRANSLATION nonsense_mediated_decay - CCDS72381.1 1 213.0 0.0 2.75 30.2 64.7 2.0 -4,-6 0.9876 6 -2.0 MINOR ENSMUSG00000031230 Fgf16 ENSMUST00000033581 ENSMUSP00000033581 TRANSLATION protein_coding - CCDS30336.1 1 207.0 7.0 2.8 32.9 161.6 0.0 -4,-5 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000045179 Sox3 ENSMUST00000135107 ENSMUSP00000115237 TRANSLATION protein_coding - CCDS30161.2 - 450.0 0.0 0.2 4.5 199.4 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000042595 Fam199x ENSMUST00000047852 ENSMUSP00000045544 TRANSLATION protein_coding - CCDS30428.1 1 388.0 0.0 1.0 10.3 671.2 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000071816 Ssxb5 ENSMUST00000089370 ENSMUSP00000086787 TRANSLATION protein_coding - CCDS30001.1 1 159.0 0.0 1.8 0.0 80.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094592 Samt1d ENSMUST00000112565 ENSMUSP00000108184 TRANSLATION protein_coding - CCDS57782.1 2 237.0 0.0 1.0 0.1 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000044400 Sowahd ENSMUST00000060057 ENSMUSP00000058152 TRANSLATION protein_coding - CCDS30067.1 - 327.0 0.0 0.8 0.1 30.4 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000031214 Ophn1 ENSMUST00000140598 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031214 Ophn1 ENSMUST00000154920 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031214 Ophn1 ENSMUST00000147529 ENSMUSP00000121723 TRANSLATION protein_coding start - 3 132.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031214 Ophn1 ENSMUST00000147805 - NO_TRANSLATION retained_intron ENSMUSG00000031214 Ophn1 ENSMUST00000033560 ENSMUSP00000033560 TRANSLATION protein_coding - CCDS30295.1 1 802.0 0.0 8.064 9.4 433.0 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000031214 Ophn1 ENSMUST00000125150 - NO_TRANSLATION retained_intron ENSMUSG00000031214 Ophn1 ENSMUST00000156917 - NO_TRANSLATION retained_intron ENSMUSG00000031214 Ophn1 ENSMUST00000142267 ENSMUSP00000119361 TRANSLATION protein_coding stop - 1 129.0 0.0 1.2 0.0 109.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031214 Ophn1 ENSMUST00000113826 ENSMUSP00000109457 TRANSLATION protein_coding - CCDS30295.1 1 802.0 0.0 8.064 9.4 433.0 0.0 -4,-5 1.0 13 15.0 PRINCIPAL:1 ENSMUSG00000031214 Ophn1 ENSMUST00000156634 - NO_TRANSLATION retained_intron ENSMUSG00000062949 Atp11c ENSMUST00000133295 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062949 Atp11c ENSMUST00000138569 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062949 Atp11c ENSMUST00000033480 ENSMUSP00000033480 TRANSLATION protein_coding - CCDS40987.1 5 1116.0 3.0 24.7 5.4 404.8 11.0 -4,-2 0.8984 17 12.42 PRINCIPAL:3 ENSMUSG00000062949 Atp11c ENSMUST00000154051 ENSMUSP00000119320 TRANSLATION protein_coding start - 5 1129.0 3.0 24.55 3.1 404.8 11.0 -4,-7 0.6954 16 -2.0 MINOR ENSMUSG00000062949 Atp11c ENSMUST00000101527 ENSMUSP00000099066 TRANSLATION protein_coding - CCDS40988.1 1 1129.0 3.0 24.55 7.2 404.8 11.0 -4,-2 1.0 16 12.7 ALTERNATIVE:1 ENSMUSG00000031146 Plp2 ENSMUST00000033486 ENSMUSP00000033486 TRANSLATION protein_coding - CCDS40842.1 1 152.0 0.0 2.6 9.9 45.5 0.0 -4,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031146 Plp2 ENSMUST00000143854 - NO_TRANSLATION retained_intron ENSMUSG00000031146 Plp2 ENSMUST00000136155 - NO_TRANSLATION retained_intron ENSMUSG00000025056 Nr0b1 ENSMUST00000026036 ENSMUSP00000026036 TRANSLATION protein_coding - CCDS30260.1 1 472.0 0.0 1.25 3.2 376.8 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000035062 Zc4h2 ENSMUST00000120620 ENSMUSP00000112449 TRANSLATION protein_coding - CCDS81154.1 1 196.0 0.0 2.83 0.8 145.0 0.0 -4,-5 0.0063 1 4.998 MINOR ENSMUSG00000035062 Zc4h2 ENSMUST00000044382 ENSMUSP00000041236 TRANSLATION protein_coding - CCDS30284.1 1 224.0 2.0 3.33 35.8 264.1 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000035062 Zc4h2 ENSMUST00000119640 ENSMUSP00000113689 TRANSLATION protein_coding - CCDS81153.1 1 217.0 2.0 3.0 35.8 236.5 0.0 -4,-5 0.833 - 15.684 MINOR ENSMUSG00000071745 Pwwp4b ENSMUST00000080324 ENSMUSP00000079200 TRANSLATION protein_coding - CCDS53094.1 1 695.0 0.0 0.0 0.3 0.0 0.0 -4,-6 0.9075 - 0.0 PRINCIPAL:1 ENSMUSG00000031169 Porcn ENSMUST00000089402 ENSMUSP00000086824 TRANSLATION protein_coding - CCDS29990.1 1 450.0 0.0 2.1 25.4 65.0 8.0 -4,-6 0.9428 3 9.0 MINOR ENSMUSG00000031169 Porcn ENSMUST00000082320 ENSMUSP00000080937 TRANSLATION protein_coding - CCDS29993.1 1 456.0 0.0 2.166 31.7 69.6 8.0 -4,-6 1.0 3 10.0 PRINCIPAL:4 ENSMUSG00000031169 Porcn ENSMUST00000122943 ENSMUSP00000138626 TRANSLATION nonsense_mediated_decay - - 1 86.0 0.0 0.0 0.0 0.0 2.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000031169 Porcn ENSMUST00000077595 ENSMUSP00000076790 TRANSLATION protein_coding - CCDS29991.1 1 461.0 0.0 2.166 26.0 71.4 8.0 -4,-6 0.9909 3 9.256 ALTERNATIVE:1 ENSMUSG00000031169 Porcn ENSMUST00000154695 ENSMUSP00000138661 TRANSLATION nonsense_mediated_decay - - 1 53.0 0.0 0.0 0.0 0.0 2.0 -4,-7 0.0005 - -2.0 MINOR ENSMUSG00000031169 Porcn ENSMUST00000139744 - NO_TRANSLATION retained_intron ENSMUSG00000031169 Porcn ENSMUST00000089403 ENSMUSP00000086825 TRANSLATION protein_coding - CCDS29992.1 1 455.0 0.0 2.1 31.7 68.5 8.0 -4,-6 0.979 3 9.82 ALTERNATIVE:1 ENSMUSG00000051827 Rhox2a ENSMUST00000063340 ENSMUSP00000067190 TRANSLATION protein_coding - CCDS30075.1 1 191.0 0.0 1.2 0.3 47.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000051827 Rhox2a ENSMUST00000173650 ENSMUSP00000134267 TRANSLATION protein_coding - CCDS81118.1 1 183.0 0.0 0.898 0.0 34.0 0.0 -4,-5 0.0721 - 8.802 MINOR ENSMUSG00000043463 Rab9b ENSMUST00000058814 ENSMUSP00000049739 TRANSLATION protein_coding - CCDS30425.1 1 201.0 20.0 1.0 33.9 190.9 0.0 -3,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000031200 Mtcp1 ENSMUST00000147830 - NO_TRANSLATION retained_intron ENSMUSG00000031200 Mtcp1 ENSMUST00000033542 ENSMUSP00000033542 TRANSLATION protein_coding - CCDS30241.1 1 107.0 0.0 2.5 12.5 99.3 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000031200 Mtcp1 ENSMUST00000114081 ENSMUSP00000109715 TRANSLATION protein_coding - CCDS30241.1 2 107.0 0.0 2.5 12.5 99.3 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000031200 Mtcp1 ENSMUST00000143538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009995 Tafazzin ENSMUST00000156880 - NO_TRANSLATION retained_intron ENSMUSG00000009995 Tafazzin ENSMUST00000132437 ENSMUSP00000135308 TRANSLATION protein_coding - CCDS72400.1 3 175.0 2.0 4.75 0.0 68.4 1.0 0,-3 0.0205 3 2.0 MINOR ENSMUSG00000009995 Tafazzin ENSMUST00000149055 - NO_TRANSLATION retained_intron ENSMUSG00000009995 Tafazzin ENSMUST00000176453 ENSMUSP00000135013 TRANSLATION protein_coding start/stop - 1 148.0 0.0 4.66 0.0 93.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009995 Tafazzin ENSMUST00000124915 ENSMUSP00000121031 TRANSLATION nonsense_mediated_decay start - 5 64.0 0.0 2.08 0.0 69.1 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009995 Tafazzin ENSMUST00000153459 - NO_TRANSLATION retained_intron ENSMUSG00000009995 Tafazzin ENSMUST00000135504 ENSMUSP00000114496 TRANSLATION protein_coding - - 5 248.0 2.0 7.41 4.1 105.7 1.0 0,-3 0.0848 3 7.406 MINOR ENSMUSG00000009995 Tafazzin ENSMUST00000124200 ENSMUSP00000134745 TRANSLATION protein_coding - CCDS57764.1 1 201.0 2.0 5.58 1.0 147.9 1.0 0,-3 0.134 3 5.338 MINOR ENSMUSG00000009995 Tafazzin ENSMUST00000147844 - NO_TRANSLATION retained_intron ENSMUSG00000009995 Tafazzin ENSMUST00000131116 ENSMUSP00000117206 TRANSLATION protein_coding start - 5 134.0 0.0 3.41 0.0 38.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009995 Tafazzin ENSMUST00000146260 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009995 Tafazzin ENSMUST00000125972 - NO_TRANSLATION retained_intron ENSMUSG00000009995 Tafazzin ENSMUST00000156788 - NO_TRANSLATION retained_intron ENSMUSG00000009995 Tafazzin ENSMUST00000156072 - NO_TRANSLATION retained_intron ENSMUSG00000009995 Tafazzin ENSMUST00000134936 - NO_TRANSLATION retained_intron ENSMUSG00000009995 Tafazzin ENSMUST00000134914 - NO_TRANSLATION retained_intron ENSMUSG00000009995 Tafazzin ENSMUST00000114182 ENSMUSP00000135593 TRANSLATION protein_coding start - 3 178.0 2.0 4.83 0.0 140.0 0.0 -4,-5 0.0091 2 -2.0 MINOR ENSMUSG00000009995 Tafazzin ENSMUST00000135012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009995 Tafazzin ENSMUST00000114180 ENSMUSP00000109818 TRANSLATION protein_coding - CCDS53107.1 5 263.0 2.0 7.91 31.4 140.0 1.0 0,-3 0.9786 3 14.0 ALTERNATIVE:1 ENSMUSG00000009995 Tafazzin ENSMUST00000134432 ENSMUSP00000115153 TRANSLATION nonsense_mediated_decay start - 3 21.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000009995 Tafazzin ENSMUST00000069722 ENSMUSP00000065270 TRANSLATION protein_coding - CCDS30224.1 1 262.0 2.0 7.91 31.4 147.9 1.0 0,-3 1.0 3 14.0 PRINCIPAL:4 ENSMUSG00000009995 Tafazzin ENSMUST00000156212 - NO_TRANSLATION retained_intron ENSMUSG00000079350 Magea8 ENSMUST00000070141 ENSMUSP00000066341 TRANSLATION protein_coding - CCDS30490.1 1 320.0 0.0 0.6 0.1 27.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000064137 Rhox8 ENSMUST00000071885 ENSMUSP00000071782 TRANSLATION protein_coding - CCDS30082.1 1 320.0 0.0 1.0 0.0 65.7 0.0 -4,0 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000039278 Pcsk1n ENSMUST00000041096 ENSMUSP00000040342 TRANSLATION protein_coding - CCDS29979.1 1 258.0 0.0 0.5 8.0 358.1 0.0 2,-2 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000031166 Wdr13 ENSMUST00000115623 ENSMUSP00000111286 TRANSLATION protein_coding - CCDS29986.1 5 485.0 0.0 2.575 27.3 34.7 0.0 -4,-7 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000031166 Wdr13 ENSMUST00000033506 ENSMUSP00000033506 TRANSLATION protein_coding - CCDS29986.1 1 485.0 0.0 2.575 27.3 34.7 0.0 -4,-7 1.0 15 16.0 PRINCIPAL:1 ENSMUSG00000031166 Wdr13 ENSMUST00000153839 ENSMUSP00000120395 TRANSLATION protein_coding stop - 3 219.0 0.0 0.165 0.0 0.0 0.0 -4,-7 0.0 6 -2.0 MINOR ENSMUSG00000031166 Wdr13 ENSMUST00000131929 - NO_TRANSLATION retained_intron ENSMUSG00000031166 Wdr13 ENSMUST00000130050 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031166 Wdr13 ENSMUST00000130832 ENSMUSP00000138468 TRANSLATION protein_coding - CCDS72338.1 5 393.0 0.0 2.575 12.5 34.7 0.0 -4,-5 0.7512 13 13.748 MINOR ENSMUSG00000031166 Wdr13 ENSMUST00000127062 ENSMUSP00000138509 TRANSLATION nonsense_mediated_decay - - 5 43.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000031166 Wdr13 ENSMUST00000148135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031166 Wdr13 ENSMUST00000149257 - NO_TRANSLATION retained_intron ENSMUSG00000031166 Wdr13 ENSMUST00000133292 ENSMUSP00000138392 TRANSLATION nonsense_mediated_decay - - 1 43.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 - -2.0 MINOR ENSMUSG00000034551 Hdx ENSMUST00000113422 ENSMUSP00000109049 TRANSLATION protein_coding - CCDS41105.1 1 692.0 0.0 1.5 11.6 21.4 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034551 Hdx ENSMUST00000038472 ENSMUSP00000043482 TRANSLATION protein_coding - CCDS72422.1 1 634.0 0.0 1.5 3.8 21.4 0.0 -4,-6 0.4315 - 12.792 MINOR ENSMUSG00000067925 Rtl8a ENSMUST00000088779 ENSMUSP00000086158 TRANSLATION protein_coding - CCDS30134.1 - 113.0 0.0 1.0 1.8 182.9 0.0 -4,-7 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057000 Nxf3 ENSMUST00000080929 ENSMUSP00000079730 TRANSLATION protein_coding - CCDS41132.1 1 553.0 0.0 8.3175 0.1 216.1 0.0 -4,0 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000057000 Nxf3 ENSMUST00000138878 ENSMUSP00000121486 TRANSLATION protein_coding stop - 3 103.0 0.0 0.53 0.0 23.4 0.0 -4,-1 0.0 1 -2.0 MINOR ENSMUSG00000095601 Rhox3a2 ENSMUST00000183901 ENSMUSP00000139263 TRANSLATION protein_coding start - 5 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095601 Rhox3a2 ENSMUST00000096459 ENSMUSP00000094198 TRANSLATION protein_coding - - 1 215.0 0.0 1.8 0.0 42.8 0.0 -4,-2 0.7599 - 12.0 PRINCIPAL:1 ENSMUSG00000095601 Rhox3a2 ENSMUST00000183543 ENSMUSP00000138828 TRANSLATION protein_coding start - 5 187.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000095601 Rhox3a2 ENSMUST00000184565 ENSMUSP00000139330 TRANSLATION protein_coding - - 5 215.0 0.0 1.8 0.0 42.8 0.0 -4,-2 0.7599 - 12.0 PRINCIPAL:1 ENSMUSG00000031157 Pqbp1 ENSMUST00000115654 ENSMUSP00000111318 TRANSLATION protein_coding - CCDS29977.1 1 263.0 0.0 2.25 9.9 28.8 0.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000031157 Pqbp1 ENSMUST00000033497 ENSMUSP00000033497 TRANSLATION protein_coding - CCDS29977.1 1 263.0 0.0 2.25 9.9 28.8 0.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000031157 Pqbp1 ENSMUST00000156741 ENSMUSP00000123657 TRANSLATION protein_coding stop - 5 236.0 0.0 1.5 0.0 28.8 0.0 -4,-7 0.0211 5 -2.0 MINOR ENSMUSG00000031157 Pqbp1 ENSMUST00000115655 ENSMUSP00000111319 TRANSLATION protein_coding - CCDS29977.1 1 263.0 0.0 2.25 9.9 28.8 0.0 -4,-7 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000031157 Pqbp1 ENSMUST00000154552 ENSMUSP00000114924 TRANSLATION protein_coding stop - 3 100.0 0.0 1.5 0.0 28.8 0.0 -4,-7 0.0151 2 -2.0 MINOR ENSMUSG00000047079 Ube2dnl2 ENSMUST00000062695 ENSMUSP00000059077 TRANSLATION protein_coding - CCDS53176.1 1 155.0 0.0 1.0 0.1 174.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072966 Gprasp2 ENSMUST00000132798 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072966 Gprasp2 ENSMUST00000150797 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072966 Gprasp2 ENSMUST00000137392 - NO_TRANSLATION retained_intron ENSMUSG00000072966 Gprasp2 ENSMUST00000113136 ENSMUSP00000108761 TRANSLATION protein_coding - CCDS53191.1 5 826.0 0.0 0.0 0.0 196.3 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000072966 Gprasp2 ENSMUST00000141953 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072966 Gprasp2 ENSMUST00000138251 - NO_TRANSLATION retained_intron ENSMUSG00000072966 Gprasp2 ENSMUST00000148658 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072966 Gprasp2 ENSMUST00000130034 - NO_TRANSLATION retained_intron ENSMUSG00000072966 Gprasp2 ENSMUST00000173804 ENSMUSP00000134666 TRANSLATION protein_coding - CCDS53191.1 1 826.0 0.0 0.0 0.0 196.3 0.0 -4,-5 1.0 5 6.0 PRINCIPAL:1 ENSMUSG00000072966 Gprasp2 ENSMUST00000142034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072966 Gprasp2 ENSMUST00000134986 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000049536 Tceal1 ENSMUST00000055104 ENSMUSP00000061875 TRANSLATION protein_coding - CCDS30421.1 1 165.0 0.0 0.4 3.1 105.6 0.0 -4,-5 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000079626 Rhox7b ENSMUST00000115156 ENSMUSP00000110809 TRANSLATION protein_coding - - 1 321.0 0.0 3.85 0.0 94.8 0.0 -4,-6 0.7464 - 12.0 PRINCIPAL:1 ENSMUSG00000105993 Tex13d ENSMUST00000197237 ENSMUSP00000143486 TRANSLATION protein_coding - - - 530.0 4.0 0.0 0.0 182.6 0.0 -4,-5 0.7581 - 10.0 PRINCIPAL:1 ENSMUSG00000050332 Amer1 ENSMUST00000084535 ENSMUSP00000109502 TRANSLATION protein_coding - CCDS41067.1 1 1132.0 0.0 0.0 0.0 418.2 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000058147 Xlr3c ENSMUST00000080839 ENSMUSP00000079651 TRANSLATION protein_coding - CCDS30197.1 1 226.0 0.0 4.5 0.4 109.1 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096915 Btbd35f6 ENSMUST00000179466 ENSMUSP00000136491 TRANSLATION protein_coding - - - 498.0 0.0 0.8 5.4 38.8 0.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000067597 Dgat2l6 ENSMUST00000037541 ENSMUSP00000036845 TRANSLATION protein_coding - CCDS53147.1 5 337.0 0.0 6.5 9.1 364.1 0.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000067597 Dgat2l6 ENSMUST00000140551 - NO_TRANSLATION retained_intron ENSMUSG00000079481 Nhsl2 ENSMUST00000144397 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079481 Nhsl2 ENSMUST00000125115 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079481 Nhsl2 ENSMUST00000155477 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079481 Nhsl2 ENSMUST00000101339 ENSMUSP00000098893 TRANSLATION protein_coding - CCDS53156.1 5 1219.0 0.0 0.0 1.7 113.2 0.0 -4,0 1.0 19 7.0 PRINCIPAL:1 ENSMUSG00000079481 Nhsl2 ENSMUST00000144753 ENSMUSP00000143176 TRANSLATION protein_coding stop - 3 148.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 2 -2.0 MINOR ENSMUSG00000079481 Nhsl2 ENSMUST00000129185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079481 Nhsl2 ENSMUST00000124279 ENSMUSP00000116112 TRANSLATION protein_coding stop - 3 154.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0005 1 -2.0 MINOR ENSMUSG00000085584 Rtl9 ENSMUST00000165829 ENSMUSP00000128287 TRANSLATION protein_coding - CCDS72442.1 1 1367.0 0.0 0.0 0.1 0.0 0.0 -4,-5 1.0 - 0.0 PRINCIPAL:1 ENSMUSG00000079578 Gm1140 ENSMUST00000114675 ENSMUSP00000110323 TRANSLATION protein_coding - CCDS53082.1 5 229.0 0.0 4.6 0.0 120.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031118 Magea14 ENSMUST00000114866 ENSMUSP00000110516 TRANSLATION protein_coding - CCDS53068.1 1 284.0 0.0 1.0 0.0 0.0 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000031118 Magea14 ENSMUST00000033449 ENSMUSP00000033449 TRANSLATION protein_coding - CCDS53068.1 1 284.0 0.0 1.0 0.0 0.0 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000063663 Brwd3 ENSMUST00000101283 ENSMUSP00000098841 TRANSLATION protein_coding - - 1 181.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000063663 Brwd3 ENSMUST00000134434 - NO_TRANSLATION retained_intron ENSMUSG00000063663 Brwd3 ENSMUST00000041866 ENSMUSP00000134621 TRANSLATION nonsense_mediated_decay - - 5 84.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063663 Brwd3 ENSMUST00000144521 ENSMUSP00000133674 TRANSLATION nonsense_mediated_decay - - 5 60.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000063663 Brwd3 ENSMUST00000150434 ENSMUSP00000123588 TRANSLATION protein_coding - CCDS41100.1 5 1799.0 0.0 5.895 7.5 215.4 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000062814 Ssxa1 ENSMUST00000133987 ENSMUSP00000122221 TRANSLATION protein_coding stop - 5 127.0 0.0 1.8 0.0 56.8 0.0 -4,-6 0.7418 - -2.0 PRINCIPAL:1 ENSMUSG00000062814 Ssxa1 ENSMUST00000072593 ENSMUSP00000072395 TRANSLATION protein_coding stop - 1 127.0 0.0 1.8 0.0 56.8 0.0 -4,-6 0.7418 - -2.0 PRINCIPAL:1 ENSMUSG00000031255 Sytl4 ENSMUST00000174542 ENSMUSP00000134030 TRANSLATION protein_coding stop - 5 185.0 8.0 1.8 0.0 81.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000031255 Sytl4 ENSMUST00000174091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031255 Sytl4 ENSMUST00000113297 ENSMUSP00000108922 TRANSLATION protein_coding - CCDS72429.1 1 502.0 8.0 4.8 1.1 150.8 0.0 -4,-5 0.0104 7 10.794 MINOR ENSMUSG00000031255 Sytl4 ENSMUST00000113294 ENSMUSP00000108919 TRANSLATION protein_coding - CCDS81169.1 1 502.0 8.0 4.8 0.0 150.8 0.0 -4,-5 0.0032 7 10.752 MINOR ENSMUSG00000031255 Sytl4 ENSMUST00000033608 ENSMUSP00000033608 TRANSLATION protein_coding - CCDS30388.1 1 673.0 8.0 6.4 8.2 218.3 0.0 -4,-5 1.0 10 21.0 PRINCIPAL:1 ENSMUSG00000079577 Gm14692 ENSMUST00000114672 ENSMUSP00000110320 TRANSLATION protein_coding - CCDS53083.1 5 229.0 0.0 4.6 0.0 120.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000043549 Fam90a1b ENSMUST00000044989 ENSMUSP00000043958 TRANSLATION protein_coding - - 1 419.0 4.0 0.0 0.0 73.1 0.0 -4,-5 0.7292 - 10.0 PRINCIPAL:1 ENSMUSG00000043549 Fam90a1b ENSMUST00000113903 ENSMUSP00000109536 TRANSLATION protein_coding - - 1 419.0 4.0 0.0 0.0 73.1 0.0 -4,-5 0.7292 - 10.0 PRINCIPAL:1 ENSMUSG00000043549 Fam90a1b ENSMUST00000113902 ENSMUSP00000109535 TRANSLATION protein_coding stop - 3 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000121520 ENSMUSG00000121520 ENSMUST00000249145 ENSMUSP00000159593 TRANSLATION protein_coding - - - 7581.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - 0.0 PRINCIPAL:1 ENSMUSG00000031379 Pir ENSMUST00000129296 - NO_TRANSLATION retained_intron ENSMUSG00000031379 Pir ENSMUST00000123343 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031379 Pir ENSMUST00000127685 - NO_TRANSLATION retained_intron ENSMUSG00000031379 Pir ENSMUST00000145412 ENSMUSP00000118045 TRANSLATION protein_coding stop - 5 253.0 4.0 6.5 0.0 176.5 0.0 -4,-7 0.0002 7 -2.0 MINOR ENSMUSG00000031379 Pir ENSMUST00000033749 ENSMUSP00000033749 TRANSLATION protein_coding - CCDS30520.1 1 290.0 4.0 7.5 20.9 222.2 0.0 -4,-7 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000121587 Gm5645 ENSMUST00000177994 ENSMUSP00000137533 TRANSLATION protein_coding - CCDS53228.1 2 237.0 0.0 1.0 0.1 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031362 Xlr4c ENSMUST00000126155 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031362 Xlr4c ENSMUST00000156749 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031362 Xlr4c ENSMUST00000114531 ENSMUSP00000110177 TRANSLATION protein_coding - CCDS41012.1 2 215.0 0.0 4.9 0.1 129.1 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031362 Xlr4c ENSMUST00000114530 ENSMUSP00000110176 TRANSLATION protein_coding - CCDS41012.1 1 215.0 0.0 4.9 0.1 129.1 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031362 Xlr4c ENSMUST00000114528 ENSMUSP00000110174 TRANSLATION protein_coding stop - 5 73.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031362 Xlr4c ENSMUST00000068551 ENSMUSP00000070117 TRANSLATION protein_coding - CCDS41012.1 5 215.0 0.0 4.9 0.1 129.1 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071788 Gm14525 ENSMUST00000119649 ENSMUSP00000113334 TRANSLATION protein_coding - CCDS53027.1 1 212.0 0.0 2.5 0.0 38.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000078218 Btbd35f3 ENSMUST00000140300 ENSMUSP00000117303 TRANSLATION protein_coding - CCDS72327.1 - 496.0 0.0 0.8 4.7 45.8 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031060 Rbm10 ENSMUST00000082089 ENSMUSP00000080738 TRANSLATION protein_coding - CCDS53014.1 5 853.0 4.0 8.55 6.1 115.6 0.0 -4,-5 0.5453 20 12.956 MINOR ENSMUSG00000031060 Rbm10 ENSMUST00000141128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031060 Rbm10 ENSMUST00000115375 ENSMUSP00000111033 TRANSLATION protein_coding - CCDS53013.1 1 929.0 4.0 8.95 8.5 125.4 0.0 -4,-5 0.9995 19 15.0 ALTERNATIVE:1 ENSMUSG00000031060 Rbm10 ENSMUST00000084383 ENSMUSP00000111031 TRANSLATION protein_coding - CCDS53014.1 1 853.0 4.0 8.55 6.1 115.6 0.0 -4,-5 0.5453 20 12.956 MINOR ENSMUSG00000031060 Rbm10 ENSMUST00000115374 ENSMUSP00000111032 TRANSLATION protein_coding - CCDS40885.1 1 930.0 4.0 8.95 8.5 125.4 0.0 -4,-5 1.0 19 15.0 PRINCIPAL:4 ENSMUSG00000031060 Rbm10 ENSMUST00000177738 ENSMUSP00000136209 TRANSLATION protein_coding - CCDS53013.1 5 929.0 4.0 8.95 8.5 125.4 0.0 -4,-5 0.9995 19 15.0 ALTERNATIVE:1 ENSMUSG00000031060 Rbm10 ENSMUST00000064911 ENSMUSP00000068188 TRANSLATION protein_coding - CCDS40885.1 1 930.0 4.0 8.95 8.5 125.4 0.0 -4,-5 1.0 19 15.0 PRINCIPAL:4 ENSMUSG00000073062 Zxdb ENSMUST00000101388 ENSMUSP00000100524 TRANSLATION protein_coding - CCDS41065.1 - 873.0 38.0 0.0 0.0 105.8 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000100200 H2al1m ENSMUST00000073949 ENSMUSP00000073605 TRANSLATION protein_coding - CCDS40856.1 - 105.0 0.0 1.0 0.0 41.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025626 Phf6 ENSMUST00000179014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025626 Phf6 ENSMUST00000101587 ENSMUSP00000110497 TRANSLATION protein_coding - - 2 323.0 13.0 3.0 0.9 118.7 0.0 -4,-5 0.0341 10 15.654 MINOR ENSMUSG00000025626 Phf6 ENSMUST00000078944 ENSMUSP00000077971 TRANSLATION protein_coding - CCDS30127.1 1 364.0 15.0 3.2 20.8 128.9 0.0 -4,-5 1.0 11 22.0 PRINCIPAL:1 ENSMUSG00000025626 Phf6 ENSMUST00000177780 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025626 Phf6 ENSMUST00000154864 ENSMUSP00000130358 TRANSLATION protein_coding - CCDS72380.1 1 284.0 15.0 3.2 0.4 101.4 0.0 -4,-5 0.0811 8 16.35 MINOR ENSMUSG00000025742 Prps2 ENSMUST00000026839 ENSMUSP00000026839 TRANSLATION protein_coding - CCDS30532.1 1 318.0 12.0 6.8 36.9 284.6 0.0 -4,-6 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000025742 Prps2 ENSMUST00000145456 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040749 Siah1b ENSMUST00000037928 ENSMUSP00000043215 TRANSLATION protein_coding - CCDS30516.1 1 282.0 15.0 2.0 28.9 300.6 0.0 -4,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000040749 Siah1b ENSMUST00000134272 ENSMUSP00000114867 TRANSLATION protein_coding stop - 3 66.0 5.0 1.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000040749 Siah1b ENSMUST00000071667 ENSMUSP00000071592 TRANSLATION protein_coding - CCDS30516.1 1 282.0 15.0 2.0 28.9 300.6 0.0 -4,-2 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000053909 Rhox10 ENSMUST00000115150 ENSMUSP00000110803 TRANSLATION protein_coding - CCDS40945.1 1 196.0 0.0 1.5 0.1 56.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031354 Amelx ENSMUST00000112120 ENSMUSP00000107748 TRANSLATION protein_coding - CCDS81197.1 1 172.0 0.0 0.0 0.7 109.0 0.0 4,-1 0.0627 - 0.0 MINOR ENSMUSG00000031354 Amelx ENSMUST00000112118 ENSMUSP00000107746 TRANSLATION protein_coding - CCDS41214.1 1 196.0 0.0 0.0 1.8 223.2 0.0 4,-1 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000031354 Amelx ENSMUST00000154923 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031354 Amelx ENSMUST00000112119 ENSMUSP00000107747 TRANSLATION protein_coding - - 5 210.0 0.0 0.0 0.8 199.7 0.0 4,-1 0.0736 - 4.59 MINOR ENSMUSG00000031354 Amelx ENSMUST00000066112 ENSMUSP00000065966 TRANSLATION protein_coding - CCDS41213.1 1 219.0 0.0 0.0 0.1 218.1 0.0 4,-1 0.2178 - 5.694 MINOR ENSMUSG00000031381 Piga ENSMUST00000208697 ENSMUSP00000146731 TRANSLATION protein_coding - - 5 250.0 11.0 1.42 2.1 60.5 2.0 -4,-5 0.0535 - 5.52 MINOR ENSMUSG00000031381 Piga ENSMUST00000155849 - NO_TRANSLATION retained_intron ENSMUSG00000031381 Piga ENSMUST00000208261 ENSMUSP00000146808 TRANSLATION protein_coding stop - 5 245.0 11.0 1.684 0.0 60.5 2.0 -4,-5 0.0005 - -2.0 MINOR ENSMUSG00000031381 Piga ENSMUST00000133813 ENSMUSP00000122176 TRANSLATION protein_coding - - 5 315.0 12.0 1.684 0.0 58.3 2.0 -4,-7 0.0012 - 6.486 MINOR ENSMUSG00000031381 Piga ENSMUST00000208741 ENSMUSP00000147146 TRANSLATION protein_coding stop - 5 246.0 11.0 1.784 0.0 60.5 2.0 -4,-7 0.0005 - -2.0 MINOR ENSMUSG00000031381 Piga ENSMUST00000112257 ENSMUSP00000137831 TRANSLATION nonsense_mediated_decay - - 1 115.0 3.0 0.764 0.0 56.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000031381 Piga ENSMUST00000112255 ENSMUSP00000107874 TRANSLATION protein_coding - CCDS30522.1 1 485.0 18.0 2.25 9.2 219.8 2.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000031381 Piga ENSMUST00000033754 ENSMUSP00000033754 TRANSLATION protein_coding - CCDS30522.1 1 485.0 18.0 2.25 9.2 219.8 2.0 -4,-7 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000031381 Piga ENSMUST00000151911 ENSMUSP00000138077 TRANSLATION nonsense_mediated_decay - - 5 267.0 6.0 0.83 0.0 146.8 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000073293 Nudt10 ENSMUST00000103006 ENSMUSP00000100071 TRANSLATION protein_coding - CCDS29957.1 1 164.0 11.0 1.0 7.6 69.4 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000079534 Pwwp4c ENSMUST00000114119 ENSMUSP00000109754 TRANSLATION protein_coding - - 3 728.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.6312 - 0.0 PRINCIPAL:1 ENSMUSG00000071738 Cldn34b3 ENSMUST00000096389 ENSMUSP00000094120 TRANSLATION protein_coding - CCDS53115.1 1 209.0 0.0 0.6 0.4 44.6 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031434 Morc4 ENSMUST00000165274 ENSMUSP00000126149 TRANSLATION protein_coding stop - 3 104.0 0.0 2.75 0.0 55.9 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000031434 Morc4 ENSMUST00000113014 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031434 Morc4 ENSMUST00000087401 ENSMUSP00000084663 TRANSLATION protein_coding - CCDS57777.1 1 928.0 4.0 10.864 2.2 118.9 0.0 -4,-1 1.0 1 13.0 PRINCIPAL:2 ENSMUSG00000031434 Morc4 ENSMUST00000033811 ENSMUSP00000033811 TRANSLATION protein_coding - CCDS53203.1 1 883.0 4.0 10.864 0.0 118.9 0.0 -4,-1 0.2753 1 12.0 ALTERNATIVE:2 ENSMUSG00000031434 Morc4 ENSMUST00000172366 - NO_TRANSLATION retained_intron ENSMUSG00000031434 Morc4 ENSMUST00000167664 ENSMUSP00000132245 TRANSLATION protein_coding start/stop - 5 218.0 4.0 4.864 0.0 62.1 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000031434 Morc4 ENSMUST00000171896 ENSMUSP00000126813 TRANSLATION nonsense_mediated_decay - - 5 37.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000031434 Morc4 ENSMUST00000136415 ENSMUSP00000132730 TRANSLATION protein_coding start - 5 667.0 4.0 6.114 0.0 62.1 0.0 -4,-5 0.0013 1 -2.0 MINOR ENSMUSG00000031434 Morc4 ENSMUST00000144481 - NO_TRANSLATION retained_intron ENSMUSG00000031434 Morc4 ENSMUST00000146914 - NO_TRANSLATION retained_intron ENSMUSG00000067369 Trmt2b ENSMUST00000087541 ENSMUSP00000084820 TRANSLATION protein_coding - CCDS41121.1 1 493.0 19.0 2.88 4.5 40.0 0.0 -4,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000067369 Trmt2b ENSMUST00000145066 - NO_TRANSLATION retained_intron ENSMUSG00000067369 Trmt2b ENSMUST00000128115 ENSMUSP00000138612 TRANSLATION nonsense_mediated_decay - - 2 458.0 18.0 2.88 0.0 39.5 0.0 -4,-1 0.0634 - -2.0 MINOR ENSMUSG00000067369 Trmt2b ENSMUST00000113252 ENSMUSP00000108878 TRANSLATION protein_coding - CCDS41121.1 1 493.0 19.0 2.88 4.5 40.0 0.0 -4,-1 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000067369 Trmt2b ENSMUST00000087540 ENSMUSP00000084819 TRANSLATION protein_coding - CCDS53183.1 1 126.0 0.0 0.5 0.0 0.0 0.0 -4,-1 0.0272 - 1.044 MINOR ENSMUSG00000025037 Maoa ENSMUST00000026013 ENSMUSP00000026013 TRANSLATION protein_coding - CCDS30033.1 1 526.0 36.0 13.5 0.4 237.4 0.0 -4,-5 0.9928 14 18.0 PRINCIPAL:1 ENSMUSG00000001173 Ocrl ENSMUST00000115020 ENSMUSP00000110672 TRANSLATION protein_coding - - 1 727.0 2.0 15.76 0.0 190.7 0.0 -4,-5 0.0013 18 2.234 MINOR ENSMUSG00000001173 Ocrl ENSMUST00000142719 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001173 Ocrl ENSMUST00000144664 - NO_TRANSLATION retained_intron ENSMUSG00000001173 Ocrl ENSMUST00000154732 ENSMUSP00000122084 TRANSLATION protein_coding start/stop - 5 266.0 0.0 5.33 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000001173 Ocrl ENSMUST00000115013 ENSMUSP00000110665 TRANSLATION protein_coding - - 1 182.0 0.0 4.75 0.0 96.1 0.0 -4,-5 0.0 1 0.0 MINOR ENSMUSG00000001173 Ocrl ENSMUST00000001202 ENSMUSP00000001202 TRANSLATION protein_coding - CCDS40957.1 1 900.0 2.0 20.84 12.6 286.8 0.0 -4,-5 1.0 20 17.0 PRINCIPAL:1 ENSMUSG00000001173 Ocrl ENSMUST00000146486 - NO_TRANSLATION retained_intron ENSMUSG00000064016 Ct45a ENSMUST00000081133 ENSMUSP00000079908 TRANSLATION protein_coding - CCDS53075.1 1 213.0 0.0 1.95 0.1 95.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079521 Gm5938 ENSMUST00000126279 - NO_TRANSLATION retained_intron ENSMUSG00000079521 Gm5938 ENSMUST00000114030 ENSMUSP00000109664 TRANSLATION protein_coding - CCDS41039.1 1 163.0 0.0 3.75 0.3 75.0 0.0 4,-1 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000037217 Syn1 ENSMUST00000081893 ENSMUSP00000080568 TRANSLATION protein_coding - CCDS53017.1 5 706.0 22.0 8.0 6.9 623.0 0.0 -4,-2 1.0 23 16.0 PRINCIPAL:3 ENSMUSG00000037217 Syn1 ENSMUST00000115345 ENSMUSP00000111002 TRANSLATION protein_coding - CCDS53018.1 1 670.0 22.0 8.0 5.3 623.0 0.0 -4,-2 0.8015 21 15.458 ALTERNATIVE:1 ENSMUSG00000036109 Mbnl3 ENSMUST00000041495 ENSMUSP00000046036 TRANSLATION protein_coding - CCDS81126.1 1 246.0 8.0 1.0 1.0 31.3 0.0 -4,-7 0.0228 - 6.84 MINOR ENSMUSG00000036109 Mbnl3 ENSMUST00000148116 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036109 Mbnl3 ENSMUST00000114875 ENSMUSP00000110525 TRANSLATION protein_coding - CCDS81126.1 1 246.0 8.0 1.0 1.0 31.3 0.0 -4,-7 0.0228 - 6.84 MINOR ENSMUSG00000036109 Mbnl3 ENSMUST00000150014 - NO_TRANSLATION retained_intron ENSMUSG00000036109 Mbnl3 ENSMUST00000156028 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036109 Mbnl3 ENSMUST00000136404 ENSMUSP00000138520 TRANSLATION protein_coding - - 5 332.0 16.0 3.0 5.4 45.0 0.0 -4,-5 0.6962 1 19.572 MINOR ENSMUSG00000036109 Mbnl3 ENSMUST00000114876 ENSMUSP00000110526 TRANSLATION protein_coding - CCDS40969.1 1 342.0 16.0 3.0 9.4 45.0 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000056854 Pou3f4 ENSMUST00000078229 ENSMUSP00000077354 TRANSLATION protein_coding - CCDS30355.1 - 361.0 0.0 0.5 22.4 194.3 0.0 -4,-7 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031329 Tsx ENSMUST00000033691 ENSMUSP00000033691 TRANSLATION protein_coding - CCDS41090.1 1 144.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.8666 - 0.0 PRINCIPAL:1 ENSMUSG00000001134 Uxt ENSMUST00000147205 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001134 Uxt ENSMUST00000150719 - NO_TRANSLATION retained_intron ENSMUSG00000001134 Uxt ENSMUST00000129899 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001134 Uxt ENSMUST00000123836 ENSMUSP00000115342 TRANSLATION protein_coding - CCDS30049.1 1 157.0 0.0 4.35 8.7 62.6 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000001134 Uxt ENSMUST00000001162 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001134 Uxt ENSMUST00000142341 - NO_TRANSLATION retained_intron ENSMUSG00000031326 Cdx4 ENSMUST00000033689 ENSMUSP00000033689 TRANSLATION protein_coding - CCDS30328.1 1 282.0 0.0 1.6 7.0 225.9 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095872 Gm15128 ENSMUST00000112814 ENSMUSP00000108433 TRANSLATION protein_coding - - 1 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6074 - 0.0 PRINCIPAL:1 ENSMUSG00000095872 Gm15128 ENSMUST00000178833 ENSMUSP00000136038 TRANSLATION protein_coding - - 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6074 - 0.0 PRINCIPAL:1 ENSMUSG00000079699 Gm6592 ENSMUST00000115563 ENSMUSP00000111225 TRANSLATION protein_coding - CCDS40849.1 5 168.0 0.0 1.8 0.0 81.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000009670 Tex11 ENSMUST00000009814 ENSMUSP00000009814 TRANSLATION protein_coding - CCDS30308.1 1 947.0 0.0 0.0 0.4 199.4 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000009670 Tex11 ENSMUST00000113718 ENSMUSP00000109347 TRANSLATION protein_coding - - 5 947.0 0.0 0.0 0.4 199.4 0.0 -4,-5 0.6903 - 2.0 PRINCIPAL:2 ENSMUSG00000009670 Tex11 ENSMUST00000113716 ENSMUSP00000109345 TRANSLATION protein_coding - CCDS53150.1 1 707.0 0.0 0.0 0.0 199.4 0.0 -4,-5 0.2913 - 2.0 ALTERNATIVE:2 ENSMUSG00000015214 Mtmr1 ENSMUST00000156307 - NO_TRANSLATION retained_intron ENSMUSG00000015214 Mtmr1 ENSMUST00000146213 ENSMUSP00000117342 TRANSLATION protein_coding stop - 2 187.0 0.0 2.83 0.0 27.2 0.0 -2,-3 0.0 5 -2.0 MINOR ENSMUSG00000015214 Mtmr1 ENSMUST00000156756 ENSMUSP00000115458 TRANSLATION protein_coding start/stop - 1 140.0 0.0 2.5 0.0 26.6 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000015214 Mtmr1 ENSMUST00000130909 ENSMUSP00000121342 TRANSLATION protein_coding start/stop - 1 149.0 0.0 2.5 0.0 26.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000015214 Mtmr1 ENSMUST00000149323 ENSMUSP00000123363 TRANSLATION protein_coding start/stop - 1 132.0 0.0 2.5 0.0 26.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000015214 Mtmr1 ENSMUST00000015358 ENSMUSP00000015358 TRANSLATION protein_coding - CCDS30178.1 1 669.0 7.0 12.71 1.5 534.7 0.0 -2,-4 1.0 16 15.0 PRINCIPAL:2 ENSMUSG00000015214 Mtmr1 ENSMUST00000138565 - NO_TRANSLATION retained_intron ENSMUSG00000015214 Mtmr1 ENSMUST00000114601 ENSMUSP00000110248 TRANSLATION protein_coding - - 5 671.0 7.0 12.71 1.5 534.7 0.0 -2,-4 0.4441 16 15.0 ALTERNATIVE:2 ENSMUSG00000015214 Mtmr1 ENSMUST00000132837 ENSMUSP00000121165 TRANSLATION protein_coding start/stop - 5 309.0 0.0 5.91 0.0 132.4 0.0 -4,-6 0.0017 11 -2.0 MINOR ENSMUSG00000015214 Mtmr1 ENSMUST00000130179 - NO_TRANSLATION retained_intron ENSMUSG00000031349 Nsdhl ENSMUST00000033715 ENSMUSP00000033715 TRANSLATION protein_coding - CCDS30190.1 1 362.0 25.0 6.03 10.0 210.5 0.0 -4,-5 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000031349 Nsdhl ENSMUST00000155663 - NO_TRANSLATION retained_intron ENSMUSG00000015290 Ubl4a ENSMUST00000015434 ENSMUSP00000015434 TRANSLATION nonsense_mediated_decay - - 3 102.0 0.0 1.7 0.0 46.2 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000015290 Ubl4a ENSMUST00000178691 ENSMUSP00000136070 TRANSLATION protein_coding - CCDS30230.1 2 157.0 0.0 3.8 25.0 74.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000015290 Ubl4a ENSMUST00000126117 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015290 Ubl4a ENSMUST00000125914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015290 Ubl4a ENSMUST00000155676 ENSMUSP00000120461 TRANSLATION protein_coding - CCDS30230.1 1 157.0 0.0 3.8 25.0 74.0 0.0 -4,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000015290 Ubl4a ENSMUST00000140632 - NO_TRANSLATION retained_intron ENSMUSG00000015290 Ubl4a ENSMUST00000126191 - NO_TRANSLATION retained_intron ENSMUSG00000078315 Fam47c ENSMUST00000105110 ENSMUSP00000137737 TRANSLATION protein_coding - CCDS59771.1 - 430.0 0.0 0.0 0.1 107.1 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031156 Slc35a2 ENSMUST00000208397 ENSMUSP00000146635 TRANSLATION protein_coding - - 5 329.0 0.0 4.644 3.5 367.2 10.0 -3,-1 0.062 3 4.401 MINOR ENSMUSG00000031156 Slc35a2 ENSMUST00000153620 ENSMUSP00000120681 TRANSLATION protein_coding start - 5 223.0 0.0 3.476 2.3 141.0 9.0 -3,-6 0.0543 - -2.0 MINOR ENSMUSG00000031156 Slc35a2 ENSMUST00000208023 - NO_TRANSLATION retained_intron ENSMUSG00000031156 Slc35a2 ENSMUST00000155967 ENSMUSP00000146730 TRANSLATION nonsense_mediated_decay - CCDS52987.1 5 390.0 0.0 6.474 4.2 446.9 19.0 -3,-6 0.7539 - -2.0 MINOR ENSMUSG00000031156 Slc35a2 ENSMUST00000123277 ENSMUSP00000116270 TRANSLATION protein_coding start - 3 167.0 0.0 3.476 0.0 148.1 9.0 -4,-2 0.0037 - -2.0 MINOR ENSMUSG00000031156 Slc35a2 ENSMUST00000096514 ENSMUSP00000094259 TRANSLATION protein_coding - - 5 242.0 0.0 3.344 0.0 141.0 9.0 -3,-6 0.0037 - 0.0 MINOR ENSMUSG00000031156 Slc35a2 ENSMUST00000208633 ENSMUSP00000147185 TRANSLATION protein_coding stop - 5 139.0 0.0 3.474 0.0 180.5 3.0 -1,-2 0.0 1 -2.0 MINOR ENSMUSG00000031156 Slc35a2 ENSMUST00000115660 ENSMUSP00000111324 TRANSLATION protein_coding - CCDS52987.1 1 390.0 0.0 6.474 4.2 446.9 19.0 -3,-6 0.7539 3 13.08 MINOR ENSMUSG00000031156 Slc35a2 ENSMUST00000207114 ENSMUSP00000146809 TRANSLATION protein_coding stop - 5 191.0 0.0 3.644 0.0 190.9 7.0 -3,-1 0.0022 1 -2.0 MINOR ENSMUSG00000031156 Slc35a2 ENSMUST00000208718 ENSMUSP00000146481 TRANSLATION non_stop_decay start/stop - 5 143.0 0.0 1.0 0.0 111.4 5.0 -3,-5 0.0037 2 -2.0 MINOR ENSMUSG00000031156 Slc35a2 ENSMUST00000115663 ENSMUSP00000111327 TRANSLATION protein_coding - CCDS52986.1 2 393.0 0.0 6.474 9.9 446.9 19.0 -3,-6 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000031156 Slc35a2 ENSMUST00000208640 ENSMUSP00000146902 TRANSLATION protein_coding - - 5 114.0 0.0 1.83 0.0 65.4 9.0 -3,-6 0.0037 - 0.0 MINOR ENSMUSG00000079487 Med12 ENSMUST00000132269 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079487 Med12 ENSMUST00000137664 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079487 Med12 ENSMUST00000156131 - NO_TRANSLATION retained_intron ENSMUSG00000079487 Med12 ENSMUST00000087956 ENSMUSP00000085269 TRANSLATION protein_coding - - 5 2169.0 0.0 1.017 0.0 861.0 0.0 -4,-7 0.2367 29 6.5 MINOR ENSMUSG00000079487 Med12 ENSMUST00000148846 - NO_TRANSLATION retained_intron ENSMUSG00000079487 Med12 ENSMUST00000087948 ENSMUSP00000085260 TRANSLATION protein_coding - CCDS41078.1 1 2190.0 0.0 1.017 0.1 941.1 0.0 -4,-7 1.0 29 8.0 PRINCIPAL:2 ENSMUSG00000079487 Med12 ENSMUST00000117203 ENSMUSP00000112729 TRANSLATION protein_coding - - 5 2182.0 0.0 1.017 0.0 941.1 0.0 -4,-7 0.4953 29 8.0 ALTERNATIVE:2 ENSMUSG00000079487 Med12 ENSMUST00000117706 ENSMUSP00000112852 TRANSLATION protein_coding - - 5 2157.0 0.0 1.017 0.0 878.8 0.0 -4,-7 0.2486 29 6.5 MINOR ENSMUSG00000079487 Med12 ENSMUST00000146877 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062170 Fmr1nb ENSMUST00000069731 ENSMUSP00000064543 TRANSLATION protein_coding - CCDS53084.1 1 192.0 0.0 0.0 0.0 0.0 4.0 -4,-6 0.2274 - 0.0 ALTERNATIVE:2 ENSMUSG00000062170 Fmr1nb ENSMUST00000071848 ENSMUSP00000071748 TRANSLATION protein_coding - CCDS30172.1 1 238.0 0.0 0.0 0.0 0.0 4.0 -4,-6 0.8799 - 0.0 PRINCIPAL:2 ENSMUSG00000062170 Fmr1nb ENSMUST00000114647 ENSMUSP00000110294 TRANSLATION protein_coding - CCDS53085.1 1 166.0 0.0 0.0 0.0 0.0 4.0 -4,-6 0.2215 - 0.0 ALTERNATIVE:2 ENSMUSG00000096867 Samt1c ENSMUST00000144098 ENSMUSP00000116409 TRANSLATION protein_coding - CCDS57781.1 2 237.0 0.0 1.0 0.1 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031343 Gabra3 ENSMUST00000137517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031343 Gabra3 ENSMUST00000055966 ENSMUSP00000062638 TRANSLATION protein_coding - CCDS30187.1 1 492.0 0.0 6.5 8.7 273.0 0.0 3,-2 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000031343 Gabra3 ENSMUST00000114554 ENSMUSP00000110201 TRANSLATION protein_coding - - 5 533.0 0.0 6.5 0.0 272.7 0.0 -4,-6 0.0425 8 11.982 MINOR ENSMUSG00000002015 Bcap31 ENSMUST00000002091 ENSMUSP00000002091 TRANSLATION protein_coding - CCDS30209.1 1 245.0 0.0 5.4 24.3 258.1 0.0 -2,-5 1.0 11 16.0 PRINCIPAL:1 ENSMUSG00000036699 Zcchc12 ENSMUST00000115256 ENSMUSP00000110911 TRANSLATION protein_coding - CCDS30058.1 2 402.0 4.0 0.8 6.8 149.2 0.0 -4,0 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036699 Zcchc12 ENSMUST00000115257 ENSMUSP00000110912 TRANSLATION protein_coding - CCDS30058.1 5 402.0 4.0 0.8 6.8 149.2 0.0 -4,0 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036699 Zcchc12 ENSMUST00000115258 ENSMUSP00000110913 TRANSLATION protein_coding - CCDS30058.1 1 402.0 4.0 0.8 6.8 149.2 0.0 -4,0 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000036699 Zcchc12 ENSMUST00000048067 ENSMUSP00000044550 TRANSLATION protein_coding - CCDS30058.1 1 402.0 4.0 0.8 6.8 149.2 0.0 -4,0 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000067561 Dmrtc1c2 ENSMUST00000087899 ENSMUSP00000085209 TRANSLATION protein_coding - CCDS53159.1 5 238.0 0.0 0.0 0.0 42.5 0.0 -4,-7 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000067561 Dmrtc1c2 ENSMUST00000087896 ENSMUSP00000085206 TRANSLATION protein_coding - CCDS81161.1 1 233.0 0.0 0.0 0.0 42.5 0.0 -4,-5 0.395 - 0.0 ALTERNATIVE:2 ENSMUSG00000067561 Dmrtc1c2 ENSMUST00000120314 ENSMUSP00000113033 TRANSLATION protein_coding - CCDS53159.1 1 238.0 0.0 0.0 0.0 42.5 0.0 -4,-7 1.0 - 0.0 PRINCIPAL:2 ENSMUSG00000031358 Msl3 ENSMUST00000033725 ENSMUSP00000033725 TRANSLATION protein_coding - - 5 525.0 0.0 5.825 5.7 248.2 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000031358 Msl3 ENSMUST00000145564 - NO_TRANSLATION retained_intron ENSMUSG00000031358 Msl3 ENSMUST00000112137 ENSMUSP00000107765 TRANSLATION protein_coding - CCDS41211.1 1 466.0 0.0 4.075 0.1 215.4 0.0 -4,-5 0.0218 3 6.534 MINOR ENSMUSG00000031358 Msl3 ENSMUST00000129860 - NO_TRANSLATION retained_intron ENSMUSG00000118415 Gm2411 ENSMUST00000238410 ENSMUSP00000158706 TRANSLATION protein_coding - - - 212.0 0.0 0.5 0.1 0.0 0.0 -2,0 0.6949 - 6.0 PRINCIPAL:1 ENSMUSG00000031250 Tnmd ENSMUST00000033602 ENSMUSP00000033602 TRANSLATION protein_coding - CCDS30386.1 1 317.0 0.0 0.0 11.8 61.2 0.0 -4,-5 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000031304 Il2rg ENSMUST00000127538 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031304 Il2rg ENSMUST00000145074 - NO_TRANSLATION retained_intron ENSMUSG00000031304 Il2rg ENSMUST00000033664 ENSMUSP00000033664 TRANSLATION protein_coding - CCDS30312.1 1 369.0 0.0 5.15 4.6 77.0 0.0 3,-1 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000031304 Il2rg ENSMUST00000135038 ENSMUSP00000123318 TRANSLATION protein_coding start - 2 153.0 0.0 3.0 0.0 35.5 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040456 H2ap ENSMUST00000044987 ENSMUSP00000043734 TRANSLATION protein_coding - CCDS30012.1 - 117.0 0.0 0.4 1.1 0.0 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000025270 Alas2 ENSMUST00000142474 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025270 Alas2 ENSMUST00000112715 ENSMUSP00000108335 TRANSLATION protein_coding - CCDS53220.1 1 572.0 15.0 8.4 0.1 258.3 0.0 -3,-2 0.1844 - 16.092 MINOR ENSMUSG00000025270 Alas2 ENSMUST00000066337 ENSMUSP00000066040 TRANSLATION protein_coding - CCDS41173.1 1 587.0 15.0 8.4 9.1 290.1 0.0 -2,-2 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000025270 Alas2 ENSMUST00000134670 - NO_TRANSLATION retained_intron ENSMUSG00000031093 Dock11 ENSMUST00000033419 ENSMUSP00000033419 TRANSLATION protein_coding - CCDS40923.1 1 2073.0 0.0 13.214 10.6 1054.8 0.0 -4,-2 1.0 34 15.0 PRINCIPAL:1 ENSMUSG00000031093 Dock11 ENSMUST00000145757 - NO_TRANSLATION retained_intron ENSMUSG00000031093 Dock11 ENSMUST00000140175 - NO_TRANSLATION retained_intron ENSMUSG00000031093 Dock11 ENSMUST00000115264 ENSMUSP00000110919 TRANSLATION protein_coding - - 5 527.0 0.0 8.1 0.0 690.4 0.0 -4,-7 0.0301 7 0.0 MINOR ENSMUSG00000031093 Dock11 ENSMUST00000115266 ENSMUSP00000110921 TRANSLATION protein_coding - - 5 1902.0 0.0 12.214 0.0 924.6 0.0 -4,-7 0.0945 30 4.002 MINOR ENSMUSG00000015289 Lage3 ENSMUST00000114153 ENSMUSP00000109790 TRANSLATION protein_coding - - 1 111.0 0.0 1.0 0.0 26.1 0.0 -4,-5 0.0005 - 5.508 MINOR ENSMUSG00000015289 Lage3 ENSMUST00000114152 ENSMUSP00000109789 TRANSLATION protein_coding - - 2 111.0 0.0 1.0 0.0 26.1 0.0 -4,-5 0.0005 - 5.508 MINOR ENSMUSG00000015289 Lage3 ENSMUST00000015433 ENSMUSP00000015433 TRANSLATION protein_coding - CCDS30229.1 1 148.0 0.0 2.0 0.1 62.4 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000000838 Fmr1 ENSMUST00000141728 - NO_TRANSLATION retained_intron ENSMUSG00000000838 Fmr1 ENSMUST00000114653 ENSMUSP00000110301 TRANSLATION protein_coding - CCDS72385.1 1 589.0 0.0 9.25 5.7 233.5 0.0 -4,-5 0.6355 10 7.932 MINOR ENSMUSG00000000838 Fmr1 ENSMUST00000114657 ENSMUSP00000110305 TRANSLATION protein_coding - - 5 593.0 0.0 9.25 7.0 281.4 0.0 -4,-5 0.6557 8 9.81 MINOR ENSMUSG00000000838 Fmr1 ENSMUST00000133327 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000838 Fmr1 ENSMUST00000127993 - NO_TRANSLATION retained_intron ENSMUSG00000000838 Fmr1 ENSMUST00000114654 ENSMUSP00000110302 TRANSLATION protein_coding - - 5 585.0 0.0 9.25 8.3 311.0 0.0 -4,-5 0.719 7 12.12 MINOR ENSMUSG00000000838 Fmr1 ENSMUST00000146177 - NO_TRANSLATION retained_intron ENSMUSG00000000838 Fmr1 ENSMUST00000088546 ENSMUSP00000085906 TRANSLATION protein_coding - CCDS30171.1 1 614.0 0.0 9.25 7.2 281.4 0.0 -4,-5 0.8644 10 9.891 MINOR ENSMUSG00000000838 Fmr1 ENSMUST00000114656 ENSMUSP00000110304 TRANSLATION protein_coding - - 5 591.0 0.0 9.25 7.0 249.2 0.0 -4,-5 0.6442 8 8.466 MINOR ENSMUSG00000000838 Fmr1 ENSMUST00000127954 - NO_TRANSLATION retained_intron ENSMUSG00000000838 Fmr1 ENSMUST00000148348 - NO_TRANSLATION retained_intron ENSMUSG00000000838 Fmr1 ENSMUST00000114655 ENSMUSP00000110303 TRANSLATION protein_coding - - 5 631.0 0.0 9.25 8.1 359.0 0.0 -4,-5 1.0 9 14.919 PRINCIPAL:1 ENSMUSG00000000838 Fmr1 ENSMUST00000142584 - NO_TRANSLATION retained_intron ENSMUSG00000079703 Ssxb8 ENSMUST00000185125 ENSMUSP00000139040 TRANSLATION protein_coding - CCDS40848.1 5 170.0 0.0 1.8 0.0 83.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079703 Ssxb8 ENSMUST00000101690 ENSMUSP00000099213 TRANSLATION protein_coding - CCDS40848.1 5 170.0 0.0 1.8 0.0 83.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000121515 ENSMUSG00000121515 ENSMUST00000249137 ENSMUSP00000159591 TRANSLATION protein_coding - - - 7954.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - 0.0 PRINCIPAL:1 ENSMUSG00000031147 Magix ENSMUST00000130287 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031147 Magix ENSMUST00000115695 ENSMUSP00000111359 TRANSLATION protein_coding - CCDS29968.1 1 324.0 0.0 2.0 0.4 50.5 0.0 -4,-6 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000031327 Chic1 ENSMUST00000116547 ENSMUSP00000112246 TRANSLATION protein_coding - CCDS53165.1 1 227.0 0.0 3.25 8.7 38.4 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031231 Cox7b ENSMUST00000033582 ENSMUSP00000033582 TRANSLATION protein_coding - CCDS41096.1 1 80.0 0.0 1.75 25.9 141.7 0.0 -4,0 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031231 Cox7b ENSMUST00000152398 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031231 Cox7b ENSMUST00000155377 - NO_TRANSLATION retained_intron ENSMUSG00000048355 Arxes1 ENSMUST00000057625 ENSMUSP00000062660 TRANSLATION protein_coding - CCDS53192.1 - 180.0 0.0 1.0 33.8 189.8 0.0 -1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031323 Dmrtc1a ENSMUST00000120808 ENSMUSP00000112572 TRANSLATION protein_coding - CCDS53162.1 1 156.0 0.0 0.0 0.0 95.6 0.0 -4,-5 0.0436 - 0.0 MINOR ENSMUSG00000031323 Dmrtc1a ENSMUST00000119624 ENSMUSP00000112458 TRANSLATION protein_coding - - 5 225.0 0.0 0.0 0.1 142.0 0.0 -4,-7 0.0473 - 2.0 ALTERNATIVE:2 ENSMUSG00000031323 Dmrtc1a ENSMUST00000121197 ENSMUSP00000113569 TRANSLATION protein_coding - CCDS53161.1 1 182.0 0.0 0.0 0.0 142.5 0.0 -4,-5 1.0 - 2.0 PRINCIPAL:2 ENSMUSG00000031323 Dmrtc1a ENSMUST00000033686 ENSMUSP00000033686 TRANSLATION protein_coding - CCDS30327.1 1 201.0 0.0 0.0 0.0 95.6 0.0 -4,-7 0.0503 - 0.0 MINOR ENSMUSG00000031410 Nxf7 ENSMUST00000033784 ENSMUSP00000033784 TRANSLATION protein_coding - CCDS30406.1 1 620.0 0.0 12.53 0.0 241.7 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000031410 Nxf7 ENSMUST00000127202 - NO_TRANSLATION retained_intron ENSMUSG00000031410 Nxf7 ENSMUST00000113163 ENSMUSP00000108788 TRANSLATION protein_coding - CCDS30406.1 1 620.0 0.0 12.53 0.0 241.7 0.0 -4,-7 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000031410 Nxf7 ENSMUST00000150900 ENSMUSP00000119764 TRANSLATION protein_coding stop - 3 155.0 0.0 1.63 0.0 69.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031410 Nxf7 ENSMUST00000141310 ENSMUSP00000117622 TRANSLATION protein_coding stop - 3 127.0 0.0 0.3 0.0 21.5 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031410 Nxf7 ENSMUST00000137977 ENSMUSP00000122993 TRANSLATION protein_coding start - 1 475.0 0.0 11.53 0.0 241.7 0.0 -4,-5 0.015 1 -2.0 MINOR ENSMUSG00000118554 Fam90a1b ENSMUST00000239046 ENSMUSP00000158935 TRANSLATION protein_coding - - - 368.0 0.0 0.0 1.1 0.0 0.0 -4,-5 0.4968 - 1.0 PRINCIPAL:1 ENSMUSG00000031398 Plxna3 ENSMUST00000148726 - NO_TRANSLATION retained_intron ENSMUSG00000031398 Plxna3 ENSMUST00000139323 - NO_TRANSLATION retained_intron ENSMUSG00000031398 Plxna3 ENSMUST00000137484 - NO_TRANSLATION retained_intron ENSMUSG00000031398 Plxna3 ENSMUST00000152376 - NO_TRANSLATION retained_intron ENSMUSG00000031398 Plxna3 ENSMUST00000154062 - NO_TRANSLATION retained_intron ENSMUSG00000031398 Plxna3 ENSMUST00000004326 ENSMUSP00000004326 TRANSLATION protein_coding - CCDS30228.1 1 1872.0 0.0 26.444 4.1 1247.7 0.0 3,-1 1.0 15 14.0 PRINCIPAL:1 ENSMUSG00000031398 Plxna3 ENSMUST00000136114 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031398 Plxna3 ENSMUST00000142236 - NO_TRANSLATION retained_intron ENSMUSG00000031398 Plxna3 ENSMUST00000152317 - NO_TRANSLATION retained_intron ENSMUSG00000079349 Magea5 ENSMUST00000169540 ENSMUSP00000132644 TRANSLATION protein_coding - CCDS30492.1 5 320.0 0.0 0.6 0.1 27.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079349 Magea5 ENSMUST00000069556 ENSMUSP00000065852 TRANSLATION protein_coding - CCDS30492.1 3 320.0 0.0 0.6 0.1 27.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000067276 Capn6 ENSMUST00000087316 ENSMUSP00000084573 TRANSLATION protein_coding - CCDS30455.1 1 641.0 7.0 6.028 15.2 454.4 0.0 -4,-5 1.0 10 22.0 PRINCIPAL:1 ENSMUSG00000067276 Capn6 ENSMUST00000151154 - NO_TRANSLATION retained_intron ENSMUSG00000109368 Gm45015 ENSMUST00000207943 ENSMUSP00000146837 TRANSLATION protein_coding - - 5 184.0 0.0 0.5 0.0 179.8 0.0 -2,-3 0.8043 - 12.0 PRINCIPAL:1 ENSMUSG00000095754 Spin2f ENSMUST00000238209 ENSMUSP00000158768 TRANSLATION protein_coding - - - 236.0 0.0 2.0 0.1 218.6 0.0 -4,-7 0.7542 - 12.0 PRINCIPAL:1 ENSMUSG00000095754 Spin2f ENSMUST00000238350 ENSMUSP00000158704 TRANSLATION protein_coding stop - - 117.0 0.0 1.0 0.0 85.4 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000071766 Rhox12 ENSMUST00000115146 ENSMUSP00000110799 TRANSLATION protein_coding - CCDS30087.1 2 186.0 0.0 1.7 0.0 55.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071766 Rhox12 ENSMUST00000183737 ENSMUSP00000139303 TRANSLATION protein_coding - - 3 159.0 0.0 0.7 0.0 38.8 0.0 -4,-5 0.0004 - 6.684 MINOR ENSMUSG00000071766 Rhox12 ENSMUST00000096453 ENSMUSP00000094191 TRANSLATION protein_coding - CCDS30087.1 1 186.0 0.0 1.7 0.0 55.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000118402 Btbd35f22 ENSMUST00000238528 ENSMUSP00000158732 TRANSLATION protein_coding - - - 498.0 0.0 0.8 5.4 40.8 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000025528 2010106E10Rik ENSMUST00000026602 ENSMUSP00000026602 TRANSLATION protein_coding - CCDS30360.1 1 269.0 0.0 1.5 1.5 0.0 1.0 2,-3 0.2772 5 7.0 MINOR ENSMUSG00000025528 2010106E10Rik ENSMUST00000113412 ENSMUSP00000109039 TRANSLATION protein_coding - CCDS53174.1 1 279.0 0.0 1.5 0.0 22.4 1.0 2,-3 1.0 4 12.0 PRINCIPAL:1 ENSMUSG00000118638 Gm3858 ENSMUST00000239206 ENSMUSP00000159230 TRANSLATION protein_coding - - - 542.0 0.0 0.0 0.0 335.5 0.0 -4,-5 0.7752 - 6.0 PRINCIPAL:1 ENSMUSG00000067771 Pwwp4a ENSMUST00000088459 ENSMUSP00000085806 TRANSLATION protein_coding - CCDS53093.1 1 695.0 0.0 0.0 0.3 0.0 0.0 -4,-6 0.9075 3 0.0 PRINCIPAL:1 ENSMUSG00000079606 Fsip2l ENSMUST00000114928 ENSMUSP00000110578 TRANSLATION protein_coding - CCDS40962.1 1 655.0 0.0 1.3 0.0 0.0 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000031130 Brs3 ENSMUST00000033464 ENSMUSP00000033464 TRANSLATION protein_coding - CCDS30150.1 1 399.0 0.0 3.0 0.0 188.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060967 Etd ENSMUST00000074232 ENSMUSP00000073854 TRANSLATION protein_coding - - 2 59.0 0.0 0.0 1.4 0.0 0.0 -4,-5 0.593 - 1.0 PRINCIPAL:1 ENSMUSG00000025040 Fundc1 ENSMUST00000176638 ENSMUSP00000135183 TRANSLATION protein_coding - CCDS85750.1 3 112.0 0.0 1.25 0.0 37.2 1.0 -4,-5 0.0124 1 5.79 MINOR ENSMUSG00000025040 Fundc1 ENSMUST00000127690 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025040 Fundc1 ENSMUST00000177213 ENSMUSP00000134878 TRANSLATION protein_coding - CCDS85749.1 1 112.0 0.0 1.25 0.0 101.7 2.0 -4,-7 0.111 - 9.66 MINOR ENSMUSG00000025040 Fundc1 ENSMUST00000026016 ENSMUSP00000026016 TRANSLATION protein_coding - CCDS30035.1 1 155.0 0.0 2.05 16.7 101.7 2.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000025040 Fundc1 ENSMUST00000142638 ENSMUSP00000135026 TRANSLATION protein_coding - CCDS85749.1 3 112.0 0.0 1.25 0.0 101.7 2.0 -4,-7 0.111 - 9.66 MINOR ENSMUSG00000047242 Taf9b ENSMUST00000134547 ENSMUSP00000115178 TRANSLATION protein_coding stop - 3 80.0 0.0 2.05 0.0 96.6 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000047242 Taf9b ENSMUST00000055497 ENSMUSP00000059751 TRANSLATION protein_coding - CCDS30340.1 1 249.0 0.0 3.38 18.3 167.5 0.0 -4,-5 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000047242 Taf9b ENSMUST00000113495 ENSMUSP00000109123 TRANSLATION protein_coding - CCDS53170.1 1 293.0 0.0 3.38 0.0 167.5 0.0 -4,-5 0.16 4 12.0 MINOR ENSMUSG00000041115 Iqsec2 ENSMUST00000112604 ENSMUSP00000108223 TRANSLATION protein_coding - - 1 1154.0 0.0 7.53 1.0 406.8 0.0 -4,-5 0.3352 23 8.0 ALTERNATIVE:2 ENSMUSG00000041115 Iqsec2 ENSMUST00000168786 ENSMUSP00000127249 TRANSLATION protein_coding - CCDS53224.1 1 1479.0 0.0 7.2 7.1 365.8 0.0 -4,-5 0.6336 24 8.674 MINOR ENSMUSG00000041115 Iqsec2 ENSMUST00000096275 ENSMUSP00000093995 TRANSLATION protein_coding - CCDS41177.1 2 949.0 0.0 7.53 3.5 406.8 0.0 -4,-2 1.0 17 8.82 PRINCIPAL:2 ENSMUSG00000041115 Iqsec2 ENSMUST00000112605 ENSMUSP00000108224 TRANSLATION protein_coding - - 5 1488.0 0.0 7.53 0.0 406.8 0.0 -4,-5 0.2562 25 8.0 ALTERNATIVE:2 ENSMUSG00000041115 Iqsec2 ENSMUST00000249244 ENSMUSP00000159624 TRANSLATION protein_coding - - - 1532.0 0.0 7.2 0.0 365.8 0.0 -4,-2 0.0673 25 6.674 MINOR ENSMUSG00000041115 Iqsec2 ENSMUST00000128724 ENSMUSP00000159485 TRANSLATION protein_coding - - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000041115 Iqsec2 ENSMUST00000153356 ENSMUSP00000159487 TRANSLATION protein_coding stop - 3 120.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041115 Iqsec2 ENSMUST00000146835 ENSMUSP00000159486 TRANSLATION protein_coding - - 1 73.0 0.0 0.0 3.4 0.0 0.0 -4,-2 0.2142 - 0.786 MINOR ENSMUSG00000051706 Or13ae2 ENSMUST00000216108 ENSMUSP00000150136 TRANSLATION protein_coding - - 5 312.0 0.0 0.8 3.3 172.1 6.0 -4,-7 0.8392 - 9.0 ALTERNATIVE:2 ENSMUSG00000051706 Or13ae2 ENSMUST00000216007 ENSMUSP00000150727 TRANSLATION protein_coding - - 5 312.0 0.0 0.8 3.3 172.1 6.0 -4,-7 0.8392 - 9.0 ALTERNATIVE:2 ENSMUSG00000051706 Or13ae2 ENSMUST00000054541 ENSMUSP00000052441 TRANSLATION protein_coding - CCDS30234.1 - 315.0 0.0 0.8 3.3 172.1 6.0 -4,-7 1.0 - 9.0 PRINCIPAL:4 ENSMUSG00000082482 H2ab2 ENSMUST00000118616 ENSMUSP00000138278 TRANSLATION protein_coding - CCDS59772.1 - 115.0 0.0 1.0 0.1 0.0 0.0 -4,0 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000054737 Zfp182 ENSMUST00000133186 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000054737 Zfp182 ENSMUST00000115334 ENSMUSP00000110990 TRANSLATION protein_coding - - 5 663.0 56.0 1.0 0.0 426.1 0.0 -4,-7 0.161 - 14.0 ALTERNATIVE:2 ENSMUSG00000054737 Zfp182 ENSMUST00000040628 ENSMUSP00000045005 TRANSLATION protein_coding - CCDS40887.1 1 627.0 56.0 1.0 0.0 426.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000054737 Zfp182 ENSMUST00000115333 ENSMUSP00000110989 TRANSLATION protein_coding - CCDS40887.1 1 627.0 56.0 1.0 0.0 426.1 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:2 ENSMUSG00000054737 Zfp182 ENSMUST00000138123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079705 Ssxb1 ENSMUST00000037297 ENSMUSP00000037624 TRANSLATION protein_coding - CCDS29997.1 1 170.0 0.0 1.8 0.0 76.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094273 Btbd35f17 ENSMUST00000105014 ENSMUSP00000100631 TRANSLATION protein_coding - CCDS57725.1 - 498.0 0.0 0.8 5.4 41.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000023165 Ssxb2 ENSMUST00000023931 ENSMUSP00000023931 TRANSLATION protein_coding - CCDS52991.1 1 128.0 0.0 2.0 0.0 83.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000023165 Ssxb2 ENSMUST00000103000 ENSMUSP00000100065 TRANSLATION protein_coding - CCDS52991.1 1 128.0 0.0 2.0 0.0 83.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047238 Mageh1 ENSMUST00000051484 ENSMUSP00000057157 TRANSLATION protein_coding - CCDS30478.1 - 218.0 0.0 0.4 0.4 0.0 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000016308 Ube2a ENSMUST00000201050 - NO_TRANSLATION retained_intron ENSMUSG00000016308 Ube2a ENSMUST00000200835 ENSMUSP00000144306 TRANSLATION protein_coding - - 5 84.0 0.0 2.66 0.0 91.9 0.0 -4,-2 0.0 1 1.842 MINOR ENSMUSG00000016308 Ube2a ENSMUST00000240546 ENSMUSP00000159479 TRANSLATION protein_coding - - - 217.0 0.0 4.74 0.0 183.5 0.0 -4,0 0.0401 2 8.0 MINOR ENSMUSG00000016308 Ube2a ENSMUST00000201117 ENSMUSP00000144372 TRANSLATION protein_coding stop - 5 110.0 0.0 3.16 0.0 163.5 0.0 -4,-5 0.0012 1 -2.0 MINOR ENSMUSG00000016308 Ube2a ENSMUST00000202783 - NO_TRANSLATION retained_intron ENSMUSG00000016308 Ube2a ENSMUST00000201012 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016308 Ube2a ENSMUST00000202812 ENSMUSP00000144262 TRANSLATION protein_coding - - 2 119.0 0.0 3.74 13.1 164.1 0.0 -4,-5 0.2623 2 5.43 MINOR ENSMUSG00000016308 Ube2a ENSMUST00000016452 ENSMUSP00000016452 TRANSLATION protein_coding - CCDS30064.1 1 152.0 0.0 4.74 34.9 183.5 0.0 -4,-2 1.0 2 12.0 PRINCIPAL:4 ENSMUSG00000016308 Ube2a ENSMUST00000202991 ENSMUSP00000144242 TRANSLATION protein_coding - CCDS85765.1 1 149.0 0.0 4.74 34.9 168.2 0.0 -4,-2 0.9472 2 12.0 ALTERNATIVE:1 ENSMUSG00000016308 Ube2a ENSMUST00000201068 ENSMUSP00000143836 TRANSLATION protein_coding - - 5 122.0 0.0 3.74 8.6 108.0 0.0 -4,-7 0.1022 1 4.898 MINOR ENSMUSG00000015665 Awat1 ENSMUST00000096361 ENSMUSP00000094088 TRANSLATION protein_coding - CCDS41074.1 1 328.0 0.0 6.2 9.9 361.5 0.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000091736 Yy2 ENSMUST00000065806 ENSMUSP00000070112 TRANSLATION protein_coding - CCDS53233.1 - 378.0 16.0 0.6 0.1 58.4 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000031284 Pak3 ENSMUST00000155215 ENSMUSP00000118549 TRANSLATION protein_coding stop - 3 195.0 0.0 1.5 0.0 72.0 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000031284 Pak3 ENSMUST00000112863 ENSMUSP00000108484 TRANSLATION protein_coding - CCDS57779.1 5 559.0 19.0 9.2 12.0 316.4 0.0 -4,-5 0.8699 9 19.948 MINOR ENSMUSG00000031284 Pak3 ENSMUST00000172330 ENSMUSP00000126562 TRANSLATION protein_coding - CCDS30454.1 1 544.0 19.0 9.2 17.2 329.2 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000031284 Pak3 ENSMUST00000156449 ENSMUSP00000118716 TRANSLATION protein_coding stop - 5 155.0 0.0 2.0 0.0 84.8 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031284 Pak3 ENSMUST00000112865 ENSMUSP00000108486 TRANSLATION protein_coding - CCDS30454.1 5 544.0 19.0 9.2 17.2 329.2 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000031284 Pak3 ENSMUST00000126592 ENSMUSP00000114352 TRANSLATION protein_coding stop - 2 23.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031284 Pak3 ENSMUST00000134402 ENSMUSP00000119090 TRANSLATION protein_coding stop - 5 366.0 10.0 3.2 0.0 114.1 0.0 -4,-5 0.0005 9 -2.0 MINOR ENSMUSG00000031284 Pak3 ENSMUST00000112864 ENSMUSP00000108485 TRANSLATION protein_coding - CCDS30454.1 1 544.0 19.0 9.2 17.2 329.2 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000031284 Pak3 ENSMUST00000033640 ENSMUSP00000033640 TRANSLATION protein_coding - CCDS57779.1 1 559.0 19.0 9.2 12.0 316.4 0.0 -4,-5 0.8699 9 19.948 MINOR ENSMUSG00000031284 Pak3 ENSMUST00000112868 ENSMUSP00000108489 TRANSLATION protein_coding - CCDS30454.1 5 544.0 19.0 9.2 17.2 329.2 0.0 -4,-5 1.0 8 22.0 PRINCIPAL:1 ENSMUSG00000041552 Ptchd1 ENSMUST00000141356 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041552 Ptchd1 ENSMUST00000038665 ENSMUSP00000039443 TRANSLATION protein_coding - CCDS41188.1 1 888.0 0.0 2.3 21.5 333.8 0.0 -4,0 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000041552 Ptchd1 ENSMUST00000170236 ENSMUSP00000132293 TRANSLATION protein_coding start - 5 146.0 0.0 0.6 0.0 0.0 0.0 -4,-2 0.0 1 -2.0 MINOR ENSMUSG00000031209 Heph ENSMUST00000033553 ENSMUSP00000033553 TRANSLATION protein_coding - CCDS30289.1 1 1157.0 34.0 16.35 8.1 137.9 1.0 4,-1 1.0 26 21.0 PRINCIPAL:1 ENSMUSG00000031209 Heph ENSMUST00000079322 ENSMUSP00000078301 TRANSLATION protein_coding - CCDS30290.1 1 847.0 22.0 11.55 0.0 53.4 0.0 4,-1 0.0436 19 0.93 MINOR ENSMUSG00000031209 Heph ENSMUST00000113838 ENSMUSP00000109469 TRANSLATION protein_coding - CCDS30289.1 1 1157.0 34.0 16.35 8.1 137.9 1.0 4,-1 1.0 26 21.0 PRINCIPAL:1 ENSMUSG00000031209 Heph ENSMUST00000135212 - NO_TRANSLATION retained_intron ENSMUSG00000031209 Heph ENSMUST00000154413 - NO_TRANSLATION retained_intron ENSMUSG00000031297 Slc7a3 ENSMUST00000101362 ENSMUSP00000098914 TRANSLATION protein_coding - CCDS30309.1 1 618.0 0.0 5.75 8.2 195.7 13.0 -4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000031297 Slc7a3 ENSMUST00000151922 - NO_TRANSLATION retained_intron ENSMUSG00000031297 Slc7a3 ENSMUST00000126282 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031297 Slc7a3 ENSMUST00000144410 - NO_TRANSLATION retained_intron ENSMUSG00000031297 Slc7a3 ENSMUST00000113710 ENSMUSP00000109339 TRANSLATION protein_coding - CCDS30309.1 5 618.0 0.0 5.75 8.2 195.7 13.0 -4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000031297 Slc7a3 ENSMUST00000138162 - NO_TRANSLATION retained_intron ENSMUSG00000031297 Slc7a3 ENSMUST00000073927 ENSMUSP00000073582 TRANSLATION protein_coding - CCDS30309.1 1 618.0 0.0 5.75 8.2 195.7 13.0 -4,-1 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000046432 Bex3 ENSMUST00000053540 ENSMUSP00000063039 TRANSLATION protein_coding - CCDS30419.1 1 124.0 0.0 0.5 0.1 51.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000046432 Bex3 ENSMUST00000113113 ENSMUSP00000108738 TRANSLATION protein_coding - CCDS30419.1 1 124.0 0.0 0.5 0.1 51.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000046432 Bex3 ENSMUST00000113112 ENSMUSP00000108737 TRANSLATION protein_coding - CCDS53194.1 1 114.0 0.0 0.5 0.1 47.8 0.0 -4,-5 0.1831 - 6.0 ALTERNATIVE:2 ENSMUSG00000046432 Bex3 ENSMUST00000178632 ENSMUSP00000136952 TRANSLATION protein_coding - CCDS30419.1 2 124.0 0.0 0.5 0.1 51.3 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000079432 Pramel3d ENSMUST00000113183 ENSMUSP00000108808 TRANSLATION protein_coding - - 1 462.0 0.0 1.26 0.4 0.0 0.0 -4,-6 0.6851 - 6.0 PRINCIPAL:1 ENSMUSG00000031360 Ctps2 ENSMUST00000126956 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031360 Ctps2 ENSMUST00000112303 ENSMUSP00000107922 TRANSLATION protein_coding - CCDS41202.1 1 586.0 30.0 14.25 16.8 622.2 0.0 -4,-6 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000031360 Ctps2 ENSMUST00000151424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031360 Ctps2 ENSMUST00000112302 ENSMUSP00000107921 TRANSLATION protein_coding - CCDS53240.1 1 535.0 28.0 12.75 0.0 560.6 0.0 -4,-6 0.0161 15 9.972 MINOR ENSMUSG00000031360 Ctps2 ENSMUST00000135094 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031360 Ctps2 ENSMUST00000112301 ENSMUSP00000107920 TRANSLATION protein_coding - CCDS41202.1 1 586.0 30.0 14.25 16.8 622.2 0.0 -4,-6 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000031360 Ctps2 ENSMUST00000112300 ENSMUSP00000107919 TRANSLATION protein_coding - - 3 151.0 4.0 3.5 0.0 88.8 0.0 -4,-6 0.0 4 0.0 MINOR ENSMUSG00000031360 Ctps2 ENSMUST00000123089 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031360 Ctps2 ENSMUST00000033727 ENSMUSP00000033727 TRANSLATION protein_coding - CCDS41202.1 1 586.0 30.0 14.25 16.8 622.2 0.0 -4,-6 1.0 19 22.0 PRINCIPAL:1 ENSMUSG00000031360 Ctps2 ENSMUST00000101095 ENSMUSP00000098656 TRANSLATION protein_coding - - 1 521.0 26.0 11.915 0.0 536.6 0.0 -4,-5 0.0044 15 5.532 MINOR ENSMUSG00000031360 Ctps2 ENSMUST00000148199 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031360 Ctps2 ENSMUST00000142927 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031360 Ctps2 ENSMUST00000148949 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025860 Xiap ENSMUST00000145065 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025860 Xiap ENSMUST00000055483 ENSMUSP00000061074 TRANSLATION protein_coding - CCDS30098.1 1 496.0 20.0 7.25 11.3 263.7 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000025860 Xiap ENSMUST00000126375 ENSMUSP00000121482 TRANSLATION protein_coding stop - 3 52.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025860 Xiap ENSMUST00000115094 ENSMUSP00000110746 TRANSLATION protein_coding - CCDS30098.1 5 496.0 20.0 7.25 11.3 263.7 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000025860 Xiap ENSMUST00000224454 ENSMUSP00000153528 TRANSLATION protein_coding stop - - 106.0 4.0 2.0 0.0 72.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025860 Xiap ENSMUST00000146874 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025860 Xiap ENSMUST00000026978 ENSMUSP00000026978 TRANSLATION protein_coding - CCDS30098.1 1 496.0 20.0 7.25 11.3 263.7 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000025860 Xiap ENSMUST00000141316 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025860 Xiap ENSMUST00000150635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025860 Xiap ENSMUST00000115095 ENSMUSP00000110747 TRANSLATION protein_coding - CCDS30098.1 1 496.0 20.0 7.25 11.3 263.7 0.0 -4,-5 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000025860 Xiap ENSMUST00000225851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034403 Pja1 ENSMUST00000167246 ENSMUSP00000132393 TRANSLATION protein_coding - CCDS41070.1 1 578.0 8.0 0.4 0.0 39.2 0.0 -4,-1 1.0 6 14.0 PRINCIPAL:2 ENSMUSG00000034403 Pja1 ENSMUST00000113797 ENSMUSP00000109428 TRANSLATION protein_coding - CCDS41071.1 2 395.0 8.0 0.4 0.0 39.2 0.0 -4,-1 0.3233 1 14.0 ALTERNATIVE:2 ENSMUSG00000034403 Pja1 ENSMUST00000113790 ENSMUSP00000109421 TRANSLATION protein_coding - CCDS81157.1 2 398.0 8.0 0.4 0.0 39.2 0.0 -4,-1 0.3233 1 14.0 ALTERNATIVE:2 ENSMUSG00000034403 Pja1 ENSMUST00000113792 ENSMUSP00000109423 TRANSLATION protein_coding - CCDS41070.1 5 578.0 8.0 0.4 0.0 39.2 0.0 -4,-1 1.0 6 14.0 PRINCIPAL:2 ENSMUSG00000034403 Pja1 ENSMUST00000036354 ENSMUSP00000109420 TRANSLATION protein_coding - CCDS41070.1 1 578.0 8.0 0.4 0.0 39.2 0.0 -4,-1 1.0 6 14.0 PRINCIPAL:2 ENSMUSG00000041710 Trpc5 ENSMUST00000148240 - NO_TRANSLATION retained_intron ENSMUSG00000041710 Trpc5 ENSMUST00000040184 ENSMUSP00000049063 TRANSLATION protein_coding - CCDS30457.1 1 975.0 0.0 7.7 11.0 238.4 0.0 -4,-7 1.0 3 15.0 PRINCIPAL:1 ENSMUSG00000072888 Samt2 ENSMUST00000101137 ENSMUSP00000098697 TRANSLATION protein_coding - CCDS30487.1 1 247.0 0.0 1.0 0.1 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000073012 Fnd3c2 ENSMUST00000091282 ENSMUSP00000088827 TRANSLATION protein_coding - CCDS30341.1 1 941.0 0.0 9.005 0.1 163.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073010 Gm5127 ENSMUST00000101297 ENSMUSP00000098855 TRANSLATION protein_coding - CCDS30343.1 1 212.0 0.0 1.0 0.1 0.0 3.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000073010 Gm5127 ENSMUST00000101296 ENSMUSP00000098854 TRANSLATION protein_coding - CCDS30343.1 1 212.0 0.0 1.0 0.1 0.0 3.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000051582 Otud6a ENSMUST00000060241 ENSMUSP00000059861 TRANSLATION protein_coding - CCDS53146.1 - 290.0 0.0 0.0 6.5 88.4 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000031428 Zcchc18 ENSMUST00000101227 ENSMUSP00000098788 TRANSLATION protein_coding - CCDS30427.1 1 393.0 4.0 0.6 0.4 131.4 0.0 -4,0 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000031428 Zcchc18 ENSMUST00000033804 ENSMUSP00000033804 TRANSLATION protein_coding - CCDS30427.1 1 393.0 4.0 0.6 0.4 131.4 0.0 -4,0 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000031428 Zcchc18 ENSMUST00000113067 ENSMUSP00000108690 TRANSLATION protein_coding - CCDS30427.1 1 393.0 4.0 0.6 0.4 131.4 0.0 -4,0 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000047694 Yipf6 ENSMUST00000113811 ENSMUSP00000109442 TRANSLATION protein_coding - CCDS30296.1 1 236.0 0.0 2.8 15.4 66.1 7.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000047694 Yipf6 ENSMUST00000151353 ENSMUSP00000117981 TRANSLATION protein_coding stop - 5 198.0 0.0 1.8 0.0 65.9 5.0 -4,-5 0.0153 2 -2.0 MINOR ENSMUSG00000047694 Yipf6 ENSMUST00000149082 - NO_TRANSLATION retained_intron ENSMUSG00000047694 Yipf6 ENSMUST00000140479 - NO_TRANSLATION retained_intron ENSMUSG00000047694 Yipf6 ENSMUST00000054697 ENSMUSP00000056039 TRANSLATION protein_coding - CCDS30296.1 1 236.0 0.0 2.8 15.4 66.1 7.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000047694 Yipf6 ENSMUST00000124010 ENSMUSP00000115199 TRANSLATION protein_coding stop - 3 55.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031266 Gla ENSMUST00000153024 ENSMUSP00000123098 TRANSLATION protein_coding stop - 3 77.0 4.0 1.75 0.0 139.8 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031266 Gla ENSMUST00000033621 ENSMUSP00000033621 TRANSLATION protein_coding - - 1 419.0 12.0 7.75 0.4 519.3 0.0 1,-2 0.4075 7 14.0 ALTERNATIVE:2 ENSMUSG00000031266 Gla ENSMUST00000239113 ENSMUSP00000159121 TRANSLATION protein_coding - CCDS41124.1 - 421.0 12.0 7.75 0.4 519.3 0.0 1,-2 1.0 7 14.0 PRINCIPAL:2 ENSMUSG00000045284 Dcaf12l1 ENSMUST00000115056 ENSMUSP00000110708 TRANSLATION protein_coding - CCDS30101.1 1 501.0 0.0 0.0 0.4 18.1 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000045284 Dcaf12l1 ENSMUST00000060481 ENSMUSP00000062991 TRANSLATION protein_coding - CCDS30101.1 1 501.0 0.0 0.0 0.4 18.1 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000031239 Itm2a ENSMUST00000033591 ENSMUSP00000033591 TRANSLATION protein_coding - CCDS30349.1 1 263.0 0.0 0.0 8.1 64.6 0.0 -4,-6 1.0 5 9.0 PRINCIPAL:1 ENSMUSG00000057439 Kir3dl2 ENSMUST00000113108 ENSMUSP00000108732 TRANSLATION protein_coding - CCDS41133.1 1 388.0 0.0 2.6 0.0 58.5 1.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057439 Kir3dl2 ENSMUST00000072125 ENSMUSP00000071994 TRANSLATION protein_coding - CCDS41133.1 1 388.0 0.0 2.6 0.0 58.5 1.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031181 Ctag2 ENSMUST00000033524 ENSMUSP00000033524 TRANSLATION protein_coding - CCDS30168.1 1 219.0 0.0 2.0 0.0 53.5 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000031430 Vsig1 ENSMUST00000033806 ENSMUSP00000033806 TRANSLATION protein_coding - CCDS30443.1 1 407.0 0.0 5.125 0.1 89.3 0.0 1,-4 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000031430 Vsig1 ENSMUST00000127629 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079460 4933403O08Rik ENSMUST00000152343 ENSMUSP00000121926 TRANSLATION protein_coding - CCDS57772.1 1 379.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8888 1 0.0 PRINCIPAL:1 ENSMUSG00000031133 Arhgef6 ENSMUST00000033468 ENSMUSP00000033468 TRANSLATION protein_coding - - 1 771.0 0.0 13.78 10.0 641.3 0.0 -3,-6 1.0 16 15.0 PRINCIPAL:1 ENSMUSG00000031133 Arhgef6 ENSMUST00000151768 - NO_TRANSLATION retained_intron ENSMUSG00000031133 Arhgef6 ENSMUST00000135098 - NO_TRANSLATION retained_intron ENSMUSG00000031133 Arhgef6 ENSMUST00000176986 ENSMUSP00000134851 TRANSLATION protein_coding stop - 5 302.0 0.0 6.95 0.0 171.2 0.0 -4,-5 0.0012 5 -2.0 MINOR ENSMUSG00000031133 Arhgef6 ENSMUST00000114735 ENSMUSP00000110383 TRANSLATION protein_coding - - 1 483.0 0.0 9.3925 0.0 374.9 0.0 -4,-5 0.0007 11 0.0 MINOR ENSMUSG00000031133 Arhgef6 ENSMUST00000175636 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031133 Arhgef6 ENSMUST00000175900 ENSMUSP00000135475 TRANSLATION protein_coding start/stop - 5 250.0 0.0 4.33 0.0 167.9 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000031133 Arhgef6 ENSMUST00000134028 - NO_TRANSLATION retained_intron ENSMUSG00000055780 Usp26 ENSMUST00000114869 ENSMUSP00000110519 TRANSLATION protein_coding - CCDS30122.1 1 835.0 4.0 0.0 0.0 266.0 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000055780 Usp26 ENSMUST00000069509 ENSMUSP00000069140 TRANSLATION protein_coding - CCDS30122.1 1 835.0 4.0 0.0 0.0 266.0 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000079641 Rpl39 ENSMUST00000131149 - NO_TRANSLATION retained_intron ENSMUSG00000079641 Rpl39 ENSMUST00000138799 - NO_TRANSLATION retained_intron ENSMUSG00000079641 Rpl39 ENSMUST00000115231 ENSMUSP00000110886 TRANSLATION protein_coding - CCDS40927.1 1 51.0 0.0 1.5 31.9 0.0 0.0 -4,-7 1.0 1 10.0 PRINCIPAL:1 ENSMUSG00000060681 Slc9a6 ENSMUST00000207892 ENSMUSP00000147081 TRANSLATION protein_coding start/stop - 5 206.0 0.0 1.0 0.0 0.0 2.0 1,-3 0.0055 3 -2.0 MINOR ENSMUSG00000060681 Slc9a6 ENSMUST00000114784 ENSMUSP00000110432 TRANSLATION protein_coding - - 5 670.0 0.0 7.57 1.0 318.0 9.0 -2,2 0.3129 4 6.0 ALTERNATIVE:2 ENSMUSG00000060681 Slc9a6 ENSMUST00000077741 ENSMUSP00000076922 TRANSLATION protein_coding - CCDS40979.1 1 702.0 0.0 6.57 10.4 311.3 9.0 -2,2 1.0 5 7.002 PRINCIPAL:2 ENSMUSG00000060681 Slc9a6 ENSMUST00000202670 - NO_TRANSLATION retained_intron ENSMUSG00000060681 Slc9a6 ENSMUST00000144068 ENSMUSP00000115364 TRANSLATION protein_coding stop - 5 313.0 0.0 2.22 0.0 173.9 5.0 -4,-7 0.0042 1 -2.0 MINOR ENSMUSG00000025287 Acot9 ENSMUST00000126200 - NO_TRANSLATION retained_intron ENSMUSG00000025287 Acot9 ENSMUST00000026324 ENSMUSP00000026324 TRANSLATION protein_coding - CCDS41187.1 1 439.0 10.0 10.83 5.9 0.0 0.0 -4,-1 1.0 12 14.0 PRINCIPAL:1 ENSMUSG00000025287 Acot9 ENSMUST00000134662 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025287 Acot9 ENSMUST00000131332 ENSMUSP00000138519 TRANSLATION nonsense_mediated_decay - - 1 50.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0162 - -2.0 MINOR ENSMUSG00000079316 Rab9 ENSMUST00000112091 ENSMUSP00000123325 TRANSLATION protein_coding - CCDS30527.1 1 201.0 23.0 2.04 36.9 195.3 0.0 -4,-7 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000079316 Rab9 ENSMUST00000149315 ENSMUSP00000119240 TRANSLATION protein_coding stop - 5 59.0 13.0 1.0 0.0 55.7 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000079316 Rab9 ENSMUST00000049435 ENSMUSP00000045127 TRANSLATION protein_coding stop - 3 202.0 23.0 2.0 0.0 195.3 0.0 -4,-6 0.1299 6 -2.0 MINOR ENSMUSG00000051323 Pcdh19 ENSMUST00000167944 ENSMUSP00000128313 TRANSLATION protein_coding - CCDS53181.1 5 1097.0 52.0 2.0 9.4 331.3 1.0 3,-2 1.0 13 17.0 PRINCIPAL:4 ENSMUSG00000051323 Pcdh19 ENSMUST00000060309 ENSMUSP00000049889 TRANSLATION protein_coding start - 5 641.0 14.0 1.0 0.0 108.6 1.0 -4,-5 0.0016 8 -2.0 MINOR ENSMUSG00000051323 Pcdh19 ENSMUST00000193376 ENSMUSP00000141338 TRANSLATION nonsense_mediated_decay start - 5 7.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0216 - -2.0 MINOR ENSMUSG00000051323 Pcdh19 ENSMUST00000193485 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000051323 Pcdh19 ENSMUST00000149154 ENSMUSP00000116886 TRANSLATION protein_coding - CCDS41117.1 1 1145.0 52.0 2.0 8.5 331.3 1.0 3,-2 0.9158 13 16.679 ALTERNATIVE:1 ENSMUSG00000049176 Frmpd4 ENSMUST00000238709 ENSMUSP00000158713 TRANSLATION protein_coding - - - 1778.0 0.0 9.9975 1.0 101.5 0.0 -4,-5 0.3459 15 8.0 MINOR ENSMUSG00000049176 Frmpd4 ENSMUST00000239138 ENSMUSP00000159190 TRANSLATION protein_coding - CCDS41210.1 - 1312.0 0.0 9.9975 3.4 101.5 0.0 -4,-7 0.9816 15 8.96 ALTERNATIVE:2 ENSMUSG00000049176 Frmpd4 ENSMUST00000112145 ENSMUSP00000107773 TRANSLATION protein_coding - CCDS41210.1 1 1312.0 0.0 9.9975 3.4 101.5 0.0 -4,-7 0.9816 15 8.96 ALTERNATIVE:2 ENSMUSG00000049176 Frmpd4 ENSMUST00000238211 ENSMUSP00000158917 TRANSLATION protein_coding - CCDS72470.1 - 1280.0 0.0 9.75 1.0 101.5 0.0 -4,-5 0.5176 15 7.502 MINOR ENSMUSG00000049176 Frmpd4 ENSMUST00000112146 ENSMUSP00000107774 TRANSLATION protein_coding - - 1 1760.0 0.0 9.9975 5.2 101.5 0.0 -4,-7 0.7839 15 9.68 ALTERNATIVE:1 ENSMUSG00000049176 Frmpd4 ENSMUST00000112149 ENSMUSP00000107777 TRANSLATION protein_coding - - 5 1320.0 0.0 9.9975 6.0 101.5 0.0 -4,-7 1.0 15 10.0 PRINCIPAL:4 ENSMUSG00000049176 Frmpd4 ENSMUST00000112147 ENSMUSP00000107775 TRANSLATION nonsense_mediated_decay - - 1 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078206 Fthl17d ENSMUST00000105004 ENSMUSP00000100621 TRANSLATION protein_coding - CCDS52995.1 - 176.0 0.0 1.0 4.4 92.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095698 Rhox2d ENSMUST00000115179 ENSMUSP00000110833 TRANSLATION protein_coding - CCDS40934.1 5 191.0 0.0 1.2 0.0 47.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031364 Grpr ENSMUST00000033730 ENSMUSP00000033730 TRANSLATION protein_coding - CCDS30512.1 1 384.0 0.0 2.8 21.8 177.6 0.0 -4,-6 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000099711 Btbd35f21 ENSMUST00000105017 ENSMUSP00000100634 TRANSLATION protein_coding - CCDS57742.1 - 498.0 0.0 0.8 5.4 40.8 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031399 Fam3a ENSMUST00000122894 ENSMUSP00000114748 TRANSLATION protein_coding stop - 3 199.0 0.0 3.765 0.0 91.2 2.0 -1,-5 0.0789 3 -2.0 MINOR ENSMUSG00000031399 Fam3a ENSMUST00000141604 ENSMUSP00000120127 TRANSLATION nonsense_mediated_decay - - 3 52.0 0.0 0.165 0.0 0.0 2.0 -1,-5 0.0026 - -2.0 MINOR ENSMUSG00000031399 Fam3a ENSMUST00000136716 - NO_TRANSLATION retained_intron ENSMUSG00000031399 Fam3a ENSMUST00000114138 ENSMUSP00000109774 TRANSLATION protein_coding - - 5 142.0 0.0 2.165 0.0 0.0 2.0 -1,-5 0.0016 3 0.798 MINOR ENSMUSG00000031399 Fam3a ENSMUST00000114139 ENSMUSP00000109775 TRANSLATION protein_coding - - 5 192.0 0.0 4.765 3.1 91.2 0.0 -4,-6 0.1532 2 12.352 MINOR ENSMUSG00000031399 Fam3a ENSMUST00000114141 ENSMUSP00000109777 TRANSLATION protein_coding - - 5 237.0 0.0 4.435 23.7 84.6 2.0 -1,-5 0.7622 3 14.708 MINOR ENSMUSG00000031399 Fam3a ENSMUST00000149218 ENSMUSP00000121662 TRANSLATION nonsense_mediated_decay - - 5 53.0 0.0 0.165 0.0 0.0 2.0 -1,-5 0.0026 - -2.0 MINOR ENSMUSG00000031399 Fam3a ENSMUST00000114142 ENSMUSP00000109778 TRANSLATION protein_coding - CCDS41022.1 5 230.0 0.0 4.765 24.9 91.2 2.0 -1,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000031399 Fam3a ENSMUST00000015427 ENSMUSP00000015427 TRANSLATION protein_coding - CCDS41022.1 5 230.0 0.0 4.765 24.9 91.2 2.0 -1,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000031399 Fam3a ENSMUST00000114143 ENSMUSP00000109779 TRANSLATION protein_coding - CCDS41022.1 1 230.0 0.0 4.765 24.9 91.2 2.0 -1,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000035387 Ppp4r3c1 ENSMUST00000088146 ENSMUSP00000085471 TRANSLATION protein_coding - CCDS53129.1 1 813.0 0.0 0.0 0.0 228.6 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000039556 Ppp1r3f ENSMUST00000132788 ENSMUSP00000116002 TRANSLATION protein_coding start/stop - 5 272.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0016 7 -2.0 MINOR ENSMUSG00000039556 Ppp1r3f ENSMUST00000115742 ENSMUSP00000111407 TRANSLATION protein_coding - CCDS29964.2 1 799.0 0.0 0.066 0.0 92.9 1.0 -4,-7 1.0 12 6.0 PRINCIPAL:4 ENSMUSG00000039556 Ppp1r3f ENSMUST00000142447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039556 Ppp1r3f ENSMUST00000150787 ENSMUSP00000122903 TRANSLATION protein_coding - CCDS72328.1 1 800.0 0.0 0.066 0.0 92.9 1.0 -4,-7 0.9488 12 6.0 ALTERNATIVE:2 ENSMUSG00000039556 Ppp1r3f ENSMUST00000123090 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002007 Srpk3 ENSMUST00000136664 - NO_TRANSLATION retained_intron ENSMUSG00000002007 Srpk3 ENSMUST00000139630 - NO_TRANSLATION retained_intron ENSMUSG00000002007 Srpk3 ENSMUST00000137045 - NO_TRANSLATION retained_intron ENSMUSG00000002007 Srpk3 ENSMUST00000002081 ENSMUSP00000002081 TRANSLATION protein_coding - CCDS30211.1 1 565.0 20.0 10.098 0.0 143.1 0.0 -4,-6 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000101819 H2al1b ENSMUST00000189531 ENSMUSP00000139582 TRANSLATION protein_coding - CCDS57729.1 - 105.0 0.0 1.0 0.0 42.7 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036985 Zdhhc9 ENSMUST00000123054 - NO_TRANSLATION retained_intron ENSMUSG00000036985 Zdhhc9 ENSMUST00000037960 ENSMUSP00000044734 TRANSLATION protein_coding - CCDS40960.1 1 364.0 8.0 7.3 9.6 127.6 4.0 -4,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000036985 Zdhhc9 ENSMUST00000127440 - NO_TRANSLATION retained_intron ENSMUSG00000036985 Zdhhc9 ENSMUST00000149416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036985 Zdhhc9 ENSMUST00000132652 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036985 Zdhhc9 ENSMUST00000088935 ENSMUSP00000086325 TRANSLATION protein_coding - CCDS40960.1 1 364.0 8.0 7.3 9.6 127.6 4.0 -4,-2 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000047485 Klhl34 ENSMUST00000087157 ENSMUSP00000084399 TRANSLATION protein_coding - CCDS41191.1 - 644.0 0.0 0.2 4.2 155.9 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031202 Rab39b ENSMUST00000033545 ENSMUSP00000033545 TRANSLATION protein_coding - CCDS30242.1 1 213.0 19.0 2.0 34.9 199.3 0.0 -4,-7 1.0 6 22.0 PRINCIPAL:1 ENSMUSG00000031391 L1cam ENSMUST00000124560 ENSMUSP00000115923 TRANSLATION protein_coding start - 5 145.0 0.0 0.0 0.0 85.8 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031391 L1cam ENSMUST00000144478 - NO_TRANSLATION retained_intron ENSMUSG00000031391 L1cam ENSMUST00000146790 ENSMUSP00000121797 TRANSLATION protein_coding stop - 5 83.0 0.0 1.15 0.0 31.7 0.0 2,-3 0.0009 4 -2.0 MINOR ENSMUSG00000031391 L1cam ENSMUST00000102871 ENSMUSP00000099935 TRANSLATION protein_coding - CCDS30215.1 1 1259.0 0.0 15.67 7.0 518.8 0.0 2,-3 1.0 30 9.8 PRINCIPAL:4 ENSMUSG00000031391 L1cam ENSMUST00000066576 ENSMUSP00000068135 TRANSLATION protein_coding - - 5 1250.0 0.0 15.67 7.0 522.8 0.0 2,-3 0.911 29 10.0 ALTERNATIVE:1 ENSMUSG00000031391 L1cam ENSMUST00000130110 - NO_TRANSLATION retained_intron ENSMUSG00000031391 L1cam ENSMUST00000114430 ENSMUSP00000110073 TRANSLATION protein_coding - - 5 1255.0 0.0 15.67 6.3 522.8 0.0 2,-3 0.8391 30 9.766 ALTERNATIVE:1 ENSMUSG00000031391 L1cam ENSMUST00000145805 - NO_TRANSLATION retained_intron ENSMUSG00000031391 L1cam ENSMUST00000141221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031391 L1cam ENSMUST00000155246 - NO_TRANSLATION retained_intron ENSMUSG00000031391 L1cam ENSMUST00000135104 - NO_TRANSLATION retained_intron ENSMUSG00000031391 L1cam ENSMUST00000148250 ENSMUSP00000114609 TRANSLATION protein_coding start/stop - 5 190.0 0.0 3.43 0.0 84.1 0.0 -4,-5 0.0 5 -2.0 MINOR ENSMUSG00000031391 L1cam ENSMUST00000129612 - NO_TRANSLATION retained_intron ENSMUSG00000079566 Spin2d ENSMUST00000114517 ENSMUSP00000110162 TRANSLATION protein_coding - CCDS57762.1 1 236.0 0.0 1.0 0.1 218.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000048173 Or1aa2 ENSMUST00000215270 ENSMUSP00000149958 TRANSLATION protein_coding - - 2 314.0 0.0 1.0 8.7 197.2 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000048173 Or1aa2 ENSMUST00000219631 ENSMUSP00000151664 TRANSLATION protein_coding - CCDS30120.1 - 332.0 0.0 1.0 0.0 197.2 5.0 -4,-7 0.3382 - 12.0 MINOR ENSMUSG00000048173 Or1aa2 ENSMUST00000050044 ENSMUSP00000052365 TRANSLATION protein_coding - - - 314.0 0.0 1.0 8.7 197.2 5.0 -3,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096644 Magea1 ENSMUST00000078193 ENSMUSP00000077323 TRANSLATION protein_coding - CCDS30493.1 - 320.0 0.0 0.6 0.1 25.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025266 Gnl3l ENSMUST00000124022 ENSMUSP00000138542 TRANSLATION nonsense_mediated_decay - - 2 35.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000025266 Gnl3l ENSMUST00000026297 ENSMUSP00000026297 TRANSLATION protein_coding - CCDS41174.1 1 577.0 16.0 3.15 9.2 51.1 0.0 -4,-6 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000025266 Gnl3l ENSMUST00000154393 ENSMUSP00000138737 TRANSLATION protein_coding stop - 3 164.0 9.0 1.4 0.0 0.0 0.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000025266 Gnl3l ENSMUST00000112691 ENSMUSP00000108311 TRANSLATION protein_coding - CCDS41174.1 1 577.0 16.0 3.15 9.2 51.1 0.0 -4,-6 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000025266 Gnl3l ENSMUST00000138026 - NO_TRANSLATION retained_intron ENSMUSG00000025266 Gnl3l ENSMUST00000146742 - NO_TRANSLATION retained_intron ENSMUSG00000025266 Gnl3l ENSMUST00000156233 ENSMUSP00000117281 TRANSLATION protein_coding stop - 2 68.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062168 Ppef1 ENSMUST00000136888 ENSMUSP00000121692 TRANSLATION protein_coding stop - 5 56.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000062168 Ppef1 ENSMUST00000135856 ENSMUSP00000123408 TRANSLATION protein_coding stop - 1 237.0 8.0 3.45 0.0 100.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000062168 Ppef1 ENSMUST00000071204 ENSMUSP00000071191 TRANSLATION protein_coding - CCDS41200.1 2 650.0 18.0 5.93 0.0 156.0 0.0 -4,-7 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000037358 Dipk2b ENSMUST00000147039 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037358 Dipk2b ENSMUST00000044188 ENSMUSP00000046567 TRANSLATION protein_coding - CCDS30038.1 1 435.0 0.0 0.4 2.2 143.0 0.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000059663 Samt2b ENSMUST00000082357 ENSMUSP00000080966 TRANSLATION protein_coding - CCDS57783.1 1 233.0 0.0 1.0 0.4 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000079655 Gm5168 ENSMUST00000168002 ENSMUSP00000127894 TRANSLATION protein_coding - CCDS40895.1 5 211.0 0.0 2.5 0.0 38.7 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079655 Gm5168 ENSMUST00000089165 ENSMUSP00000086568 TRANSLATION protein_coding - CCDS40895.1 1 211.0 0.0 2.5 0.0 38.7 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000016150 Tenm1 ENSMUST00000115058 ENSMUSP00000110710 TRANSLATION protein_coding - - 5 2724.0 0.0 17.12 9.3 362.3 0.0 -4,-5 0.8314 30 10.472 ALTERNATIVE:1 ENSMUSG00000016150 Tenm1 ENSMUST00000115059 ENSMUSP00000110711 TRANSLATION protein_coding - CCDS40953.1 1 2731.0 0.0 17.384 9.3 362.3 0.0 -4,-5 1.0 31 11.0 PRINCIPAL:3 ENSMUSG00000016150 Tenm1 ENSMUST00000126161 - NO_TRANSLATION retained_intron ENSMUSG00000016150 Tenm1 ENSMUST00000154433 - NO_TRANSLATION retained_intron ENSMUSG00000016150 Tenm1 ENSMUST00000016294 ENSMUSP00000016294 TRANSLATION protein_coding - CCDS40953.1 1 2731.0 0.0 17.384 9.3 362.3 0.0 -4,-5 1.0 31 11.0 PRINCIPAL:3 ENSMUSG00000016150 Tenm1 ENSMUST00000125231 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096468 Gm16405 ENSMUST00000180150 ENSMUSP00000136138 TRANSLATION protein_coding - CCDS53072.1 1 155.0 0.0 1.75 0.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000096468 Gm16405 ENSMUST00000169247 ENSMUSP00000136048 TRANSLATION protein_coding - CCDS53072.1 3 155.0 0.0 1.75 0.0 0.0 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031394 Opn1mw ENSMUST00000123401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031394 Opn1mw ENSMUST00000033771 ENSMUSP00000033771 TRANSLATION protein_coding - CCDS30220.1 1 359.0 13.0 5.5 1.1 134.3 10.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000031394 Opn1mw ENSMUST00000135307 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031394 Opn1mw ENSMUST00000127445 ENSMUSP00000118631 TRANSLATION protein_coding start - 3 164.0 6.0 3.3 0.0 61.0 3.0 -2,-5 0.0042 - -2.0 MINOR ENSMUSG00000031394 Opn1mw ENSMUST00000101457 ENSMUSP00000099000 TRANSLATION protein_coding - - 1 389.0 13.0 5.096 0.0 134.3 10.0 -4,-5 0.0443 - 17.19 MINOR ENSMUSG00000031394 Opn1mw ENSMUST00000145443 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000002014 Ssr4 ENSMUST00000155552 - NO_TRANSLATION retained_intron ENSMUSG00000002014 Ssr4 ENSMUST00000166518 ENSMUSP00000131386 TRANSLATION protein_coding - CCDS53099.1 1 173.0 0.0 4.5 13.5 230.3 1.0 3,-2 0.9978 5 10.996 ALTERNATIVE:1 ENSMUSG00000002014 Ssr4 ENSMUST00000141721 - NO_TRANSLATION retained_intron ENSMUSG00000002014 Ssr4 ENSMUST00000129239 - NO_TRANSLATION retained_intron ENSMUSG00000002014 Ssr4 ENSMUST00000002090 ENSMUSP00000002090 TRANSLATION protein_coding - CCDS30213.1 1 172.0 0.0 4.5 17.7 227.9 1.0 2,-3 1.0 5 12.0 PRINCIPAL:4 ENSMUSG00000002014 Ssr4 ENSMUST00000130738 - NO_TRANSLATION retained_intron ENSMUSG00000002014 Ssr4 ENSMUST00000136544 - NO_TRANSLATION retained_intron ENSMUSG00000002014 Ssr4 ENSMUST00000142829 - NO_TRANSLATION retained_intron ENSMUSG00000031103 Elf4 ENSMUST00000140486 ENSMUSP00000118436 TRANSLATION protein_coding stop - 1 391.0 0.0 1.4 0.0 221.9 0.0 -4,-5 0.0557 - -2.0 MINOR ENSMUSG00000031103 Elf4 ENSMUST00000114958 ENSMUSP00000110608 TRANSLATION protein_coding - CCDS30108.1 1 655.0 0.0 1.4 4.6 221.9 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000031103 Elf4 ENSMUST00000033429 ENSMUSP00000033429 TRANSLATION protein_coding - CCDS30108.1 5 655.0 0.0 1.4 4.6 221.9 0.0 -4,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000033906 Zdhhc15 ENSMUST00000042070 ENSMUSP00000047615 TRANSLATION protein_coding - CCDS30332.1 1 337.0 8.0 8.41 13.8 119.7 0.0 -2,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000031109 Enox2 ENSMUST00000141393 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031109 Enox2 ENSMUST00000114911 ENSMUSP00000110561 TRANSLATION protein_coding - CCDS72378.1 1 587.0 0.0 3.2 0.0 34.3 0.0 -4,-5 0.2851 - 12.0 MINOR ENSMUSG00000031109 Enox2 ENSMUST00000155770 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031109 Enox2 ENSMUST00000114918 ENSMUSP00000110568 TRANSLATION protein_coding - CCDS30115.1 1 598.0 0.0 3.2 0.0 34.3 0.0 -4,-5 0.2164 - 12.0 MINOR ENSMUSG00000031109 Enox2 ENSMUST00000167659 ENSMUSP00000128885 TRANSLATION protein_coding - CCDS30115.1 5 598.0 0.0 3.2 0.0 34.3 0.0 -4,-5 0.2164 - 12.0 MINOR ENSMUSG00000031109 Enox2 ENSMUST00000114914 ENSMUSP00000110564 TRANSLATION protein_coding - CCDS30115.1 1 598.0 0.0 3.2 0.0 34.3 0.0 -4,-5 0.2164 - 12.0 MINOR ENSMUSG00000031109 Enox2 ENSMUST00000033437 ENSMUSP00000033437 TRANSLATION protein_coding - CCDS30115.1 1 598.0 0.0 3.2 0.0 34.3 0.0 -4,-5 0.2164 - 12.0 MINOR ENSMUSG00000031109 Enox2 ENSMUST00000137518 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031109 Enox2 ENSMUST00000114912 ENSMUSP00000110562 TRANSLATION protein_coding - CCDS72377.1 1 582.0 0.0 3.2 9.3 34.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000025051 Samt4 ENSMUST00000026029 ENSMUSP00000026029 TRANSLATION protein_coding - CCDS30486.1 1 233.0 0.0 1.0 0.4 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000025246 Tbl1x ENSMUST00000088217 ENSMUSP00000085549 TRANSLATION protein_coding - CCDS41036.1 1 527.0 0.0 10.66 19.7 212.3 0.0 -4,-5 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000025246 Tbl1x ENSMUST00000133893 - NO_TRANSLATION retained_intron ENSMUSG00000079697 Gm5751 ENSMUST00000115561 ENSMUSP00000111223 TRANSLATION protein_coding - - 5 150.0 0.0 2.0 0.0 85.4 0.0 -4,-5 0.739 - 12.0 PRINCIPAL:1 ENSMUSG00000060685 Fthl17c ENSMUST00000075792 ENSMUSP00000075195 TRANSLATION protein_coding - CCDS52994.1 - 176.0 0.0 1.0 5.6 95.6 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061273 Mmgt1 ENSMUST00000059899 ENSMUSP00000051621 TRANSLATION protein_coding - CCDS30147.1 1 131.0 0.0 3.25 26.4 0.0 0.0 2,-2 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000037369 Kdm6a ENSMUST00000223885 ENSMUSP00000153609 TRANSLATION nonsense_mediated_decay - - - 224.0 0.0 0.709 0.0 27.9 0.0 -2,-4 0.0 3 -2.0 MINOR ENSMUSG00000037369 Kdm6a ENSMUST00000044484 ENSMUSP00000045862 TRANSLATION protein_coding - CCDS81102.1 5 1401.0 8.0 11.6495 13.1 145.9 0.0 -2,-4 1.0 17 22.0 PRINCIPAL:1 ENSMUSG00000037369 Kdm6a ENSMUST00000130978 - NO_TRANSLATION retained_intron ENSMUSG00000037369 Kdm6a ENSMUST00000052368 ENSMUSP00000061539 TRANSLATION protein_coding - CCDS30037.1 1 1424.0 8.0 11.4515 1.1 145.9 0.0 -2,-4 0.4387 17 17.636 MINOR ENSMUSG00000037369 Kdm6a ENSMUST00000224255 ENSMUSP00000153167 TRANSLATION protein_coding start/stop - - 236.0 0.0 1.445 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000037369 Kdm6a ENSMUST00000224084 ENSMUSP00000153267 TRANSLATION protein_coding start/stop - - 369.0 0.0 0.83 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000037369 Kdm6a ENSMUST00000225738 - NO_TRANSLATION retained_intron ENSMUSG00000037369 Kdm6a ENSMUST00000225336 ENSMUSP00000153215 TRANSLATION protein_coding start - - 997.0 8.0 8.7955 0.0 110.3 0.0 -4,-5 0.0111 11 -2.0 MINOR ENSMUSG00000037369 Kdm6a ENSMUST00000226046 - NO_TRANSLATION retained_intron ENSMUSG00000037369 Kdm6a ENSMUST00000155161 - NO_TRANSLATION retained_intron ENSMUSG00000121525 ENSMUSG00000121525 ENSMUST00000249150 ENSMUSP00000159597 TRANSLATION protein_coding - - - 6688.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - 0.0 PRINCIPAL:1 ENSMUSG00000048007 Timm8a1 ENSMUST00000054213 ENSMUSP00000050156 TRANSLATION protein_coding - CCDS41122.1 1 97.0 0.0 2.0 13.1 83.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000036959 Bcorl1 ENSMUST00000142160 ENSMUSP00000117056 TRANSLATION protein_coding start/stop - 5 746.0 0.0 0.2 0.0 0.0 0.0 -4,-6 0.0074 2 -2.0 MINOR ENSMUSG00000036959 Bcorl1 ENSMUST00000114972 ENSMUSP00000110623 TRANSLATION protein_coding start - 5 1693.0 0.0 3.84 0.0 215.2 0.0 -4,-5 0.1112 3 -2.0 MINOR ENSMUSG00000036959 Bcorl1 ENSMUST00000037596 ENSMUSP00000039898 TRANSLATION protein_coding - CCDS40961.1 5 1781.0 0.0 4.04 0.1 218.6 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000036959 Bcorl1 ENSMUST00000156042 ENSMUSP00000117693 TRANSLATION nonsense_mediated_decay - - 3 48.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036959 Bcorl1 ENSMUST00000136348 ENSMUSP00000122000 TRANSLATION protein_coding - CCDS40961.1 5 1781.0 0.0 4.04 0.1 218.6 0.0 -4,-7 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000036959 Bcorl1 ENSMUST00000156703 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031227 Magee1 ENSMUST00000033578 ENSMUSP00000094078 TRANSLATION protein_coding - CCDS41094.1 - 918.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.9395 12 0.0 PRINCIPAL:1 ENSMUSG00000031310 Zmym3 ENSMUST00000119699 ENSMUSP00000112475 TRANSLATION protein_coding - - 5 495.0 17.0 0.6 2.4 107.3 0.0 -4,-5 0.2374 4 9.3 MINOR ENSMUSG00000031310 Zmym3 ENSMUST00000155040 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031310 Zmym3 ENSMUST00000141895 - NO_TRANSLATION retained_intron ENSMUSG00000031310 Zmym3 ENSMUST00000129586 - NO_TRANSLATION retained_intron ENSMUSG00000031310 Zmym3 ENSMUST00000129545 - NO_TRANSLATION retained_intron ENSMUSG00000031310 Zmym3 ENSMUST00000137416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031310 Zmym3 ENSMUST00000121520 ENSMUSP00000113225 TRANSLATION protein_coding - - 5 1368.0 22.0 0.6 5.4 492.1 0.0 -4,-5 0.839 15 16.0 ALTERNATIVE:1 ENSMUSG00000031310 Zmym3 ENSMUST00000143159 - NO_TRANSLATION retained_intron ENSMUSG00000031310 Zmym3 ENSMUST00000147017 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031310 Zmym3 ENSMUST00000118092 ENSMUSP00000112399 TRANSLATION protein_coding - CCDS53153.1 1 349.0 0.0 0.0 0.3 0.0 0.0 -4,-5 0.0313 - 0.0 MINOR ENSMUSG00000031310 Zmym3 ENSMUST00000134005 ENSMUSP00000118986 TRANSLATION protein_coding stop - 2 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031310 Zmym3 ENSMUST00000129561 - NO_TRANSLATION retained_intron ENSMUSG00000031310 Zmym3 ENSMUST00000120201 ENSMUSP00000114005 TRANSLATION protein_coding - CCDS53154.1 1 497.0 17.0 0.6 2.4 107.3 0.0 -4,-5 0.2765 4 9.3 MINOR ENSMUSG00000031310 Zmym3 ENSMUST00000117637 ENSMUSP00000113462 TRANSLATION protein_coding - CCDS53153.1 1 349.0 0.0 0.0 0.3 0.0 0.0 -4,-5 0.0313 - 0.0 MINOR ENSMUSG00000031310 Zmym3 ENSMUST00000121429 ENSMUSP00000114118 TRANSLATION protein_coding - CCDS53154.1 1 497.0 17.0 0.6 2.4 107.3 0.0 -4,-5 0.2765 4 9.3 MINOR ENSMUSG00000031310 Zmym3 ENSMUST00000063577 ENSMUSP00000068197 TRANSLATION protein_coding - CCDS30315.1 1 1370.0 22.0 0.6 5.4 492.1 0.0 -4,-5 1.0 15 16.0 PRINCIPAL:4 ENSMUSG00000031310 Zmym3 ENSMUST00000120107 ENSMUSP00000113049 TRANSLATION protein_coding - - 5 1356.0 22.0 0.6 1.0 492.1 0.0 -4,-5 0.383 15 14.0 MINOR ENSMUSG00000031310 Zmym3 ENSMUST00000117901 ENSMUSP00000112497 TRANSLATION protein_coding - CCDS53155.1 1 1278.0 22.0 0.6 0.0 384.8 0.0 -4,-5 0.266 14 13.6 MINOR ENSMUSG00000095887 Gm10096 ENSMUST00000178672 ENSMUSP00000137544 TRANSLATION protein_coding - CCDS53031.1 5 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095887 Gm10096 ENSMUST00000180207 ENSMUSP00000136137 TRANSLATION protein_coding - CCDS53031.1 1 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000016327 Atp1b4 ENSMUST00000115134 ENSMUSP00000110787 TRANSLATION protein_coding - CCDS72368.1 1 352.0 0.0 5.5 8.7 291.5 2.0 -4,-2 0.8942 3 11.0 ALTERNATIVE:1 ENSMUSG00000016327 Atp1b4 ENSMUST00000016471 ENSMUSP00000016471 TRANSLATION protein_coding - CCDS30090.1 1 356.0 0.0 5.5 8.7 302.8 2.0 -4,-2 1.0 3 11.0 PRINCIPAL:4 ENSMUSG00000058252 Tcp11x2 ENSMUST00000078605 ENSMUSP00000077676 TRANSLATION protein_coding - CCDS41129.1 1 503.0 0.0 3.398 0.0 353.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000121521 ENSMUSG00000121521 ENSMUST00000249146 ENSMUSP00000159594 TRANSLATION protein_coding - - - 7581.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - 0.0 PRINCIPAL:1 ENSMUSG00000031409 Tceal6 ENSMUST00000033783 ENSMUSP00000033783 TRANSLATION protein_coding - CCDS30402.1 1 200.0 0.0 0.0 1.1 125.1 0.0 -4,-5 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000079532 Ctag2l2 ENSMUST00000114117 ENSMUSP00000109752 TRANSLATION protein_coding - CCDS41027.1 5 208.0 0.0 2.0 0.4 51.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094004 Pramel3c ENSMUST00000113173 ENSMUSP00000108798 TRANSLATION protein_coding - - 1 462.0 0.0 1.26 0.4 0.0 0.0 -4,-6 0.6807 - 6.0 ALTERNATIVE:2 ENSMUSG00000094004 Pramel3c ENSMUST00000180198 ENSMUSP00000137160 TRANSLATION protein_coding - CCDS53187.1 1 463.0 0.0 1.26 0.4 0.0 0.0 -4,-7 0.8356 - 6.0 PRINCIPAL:4 ENSMUSG00000025059 Gk ENSMUST00000156390 ENSMUSP00000119564 TRANSLATION protein_coding - CCDS41050.1 1 553.0 11.0 14.5 16.7 524.9 1.0 -4,-7 0.9244 13 20.596 MINOR ENSMUSG00000025059 Gk ENSMUST00000124386 - NO_TRANSLATION retained_intron ENSMUSG00000025059 Gk ENSMUST00000113978 ENSMUSP00000109611 TRANSLATION protein_coding - CCDS81149.1 1 559.0 11.0 14.698 16.7 541.7 1.0 -4,-7 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000025059 Gk ENSMUST00000152221 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025059 Gk ENSMUST00000142152 ENSMUSP00000120754 TRANSLATION protein_coding - CCDS81150.1 1 552.0 11.0 14.62375 7.2 502.7 0.0 -4,-7 0.6254 12 17.09 MINOR ENSMUSG00000025059 Gk ENSMUST00000026039 ENSMUSP00000026039 TRANSLATION protein_coding - CCDS53126.1 1 524.0 11.0 14.5 11.7 524.9 0.0 -4,-7 0.7889 13 19.324 MINOR ENSMUSG00000025059 Gk ENSMUST00000125081 - NO_TRANSLATION retained_intron ENSMUSG00000025059 Gk ENSMUST00000122950 - NO_TRANSLATION retained_intron ENSMUSG00000052821 Cysltr1 ENSMUST00000113480 ENSMUSP00000109108 TRANSLATION protein_coding - CCDS41098.1 1 352.0 0.0 1.0 0.0 142.6 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000052821 Cysltr1 ENSMUST00000064892 ENSMUSP00000063520 TRANSLATION protein_coding - CCDS41098.1 2 352.0 0.0 1.0 0.0 142.6 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000034311 Kif4 ENSMUST00000156386 - NO_TRANSLATION retained_intron ENSMUSG00000034311 Kif4 ENSMUST00000145319 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034311 Kif4 ENSMUST00000048962 ENSMUSP00000048383 TRANSLATION protein_coding - CCDS30305.1 1 1231.0 11.0 7.79 9.1 389.2 0.0 -4,-5 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000057805 1700084M14Rik ENSMUST00000078832 ENSMUSP00000077877 TRANSLATION protein_coding - - 1 78.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5648 - 0.0 PRINCIPAL:1 ENSMUSG00000031204 Asb12 ENSMUST00000134899 ENSMUSP00000148104 TRANSLATION protein_coding stop - 3 70.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031204 Asb12 ENSMUST00000033549 ENSMUSP00000033549 TRANSLATION protein_coding - CCDS30283.1 1 308.0 0.0 1.2 5.6 92.2 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000025272 Tro ENSMUST00000151403 ENSMUSP00000120457 TRANSLATION protein_coding - CCDS72448.1 1 838.0 0.0 5.33 0.0 0.0 0.0 -4,-7 0.3487 2 6.0 ALTERNATIVE:2 ENSMUSG00000025272 Tro ENSMUST00000163450 ENSMUSP00000127689 TRANSLATION nonsense_mediated_decay - - 5 35.0 4.0 0.0 0.0 0.0 0.0 -4,-5 0.0416 - -2.0 MINOR ENSMUSG00000025272 Tro ENSMUST00000148604 ENSMUSP00000116905 TRANSLATION protein_coding stop - 1 560.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0663 2 -2.0 MINOR ENSMUSG00000025272 Tro ENSMUST00000164071 ENSMUSP00000126042 TRANSLATION protein_coding - - 5 296.0 0.0 5.33 0.0 0.0 0.0 -4,-5 0.0503 - 6.0 ALTERNATIVE:2 ENSMUSG00000025272 Tro ENSMUST00000087258 ENSMUSP00000084513 TRANSLATION protein_coding - CCDS30465.1 1 2087.0 0.0 5.33 0.0 0.0 0.0 -4,-7 1.0 3 6.0 PRINCIPAL:2 ENSMUSG00000025272 Tro ENSMUST00000171775 - NO_TRANSLATION retained_intron ENSMUSG00000025272 Tro ENSMUST00000169450 - NO_TRANSLATION retained_intron ENSMUSG00000025272 Tro ENSMUST00000163969 ENSMUSP00000126054 TRANSLATION protein_coding - CCDS81183.1 1 802.0 0.0 4.73 0.0 0.0 0.0 -4,-7 0.18 2 4.8 MINOR ENSMUSG00000025272 Tro ENSMUST00000165192 - NO_TRANSLATION retained_intron ENSMUSG00000025272 Tro ENSMUST00000112709 ENSMUSP00000108329 TRANSLATION protein_coding - CCDS30465.1 5 2087.0 0.0 5.33 0.0 0.0 0.0 -4,-7 1.0 3 6.0 PRINCIPAL:2 ENSMUSG00000025272 Tro ENSMUST00000087253 ENSMUSP00000084508 TRANSLATION protein_coding - CCDS53221.1 1 972.0 0.0 5.33 0.0 0.0 0.0 -4,-7 0.3813 2 6.0 ALTERNATIVE:2 ENSMUSG00000036551 Akap14 ENSMUST00000046557 ENSMUSP00000048773 TRANSLATION protein_coding - CCDS30070.1 1 536.0 0.0 3.5 0.0 155.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031347 Cetn2 ENSMUST00000114550 ENSMUSP00000110197 TRANSLATION protein_coding - - 3 163.0 26.0 4.25 5.3 99.5 0.0 -4,-6 0.2295 4 17.82 MINOR ENSMUSG00000031347 Cetn2 ENSMUST00000033713 ENSMUSP00000033713 TRANSLATION protein_coding - - 1 163.0 26.0 4.25 5.3 99.5 0.0 -4,-6 0.2295 4 17.82 MINOR ENSMUSG00000031347 Cetn2 ENSMUST00000114551 ENSMUSP00000110198 TRANSLATION protein_coding - CCDS41003.1 1 172.0 26.0 4.58 36.9 99.5 0.0 -4,-2 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000031347 Cetn2 ENSMUST00000152200 ENSMUSP00000117704 TRANSLATION protein_coding stop - 3 111.0 12.0 2.75 0.0 53.2 0.0 -4,-6 0.0003 4 -2.0 MINOR ENSMUSG00000031438 Rnf128 ENSMUST00000113027 ENSMUSP00000108650 TRANSLATION protein_coding - CCDS57776.1 5 402.0 8.0 4.3 6.8 74.6 1.0 3,-2 0.7814 1 19.299 MINOR ENSMUSG00000031438 Rnf128 ENSMUST00000113026 ENSMUSP00000108649 TRANSLATION protein_coding - CCDS30435.1 1 428.0 8.0 4.7 9.3 69.7 1.0 1,-1 1.0 2 20.604 PRINCIPAL:1 ENSMUSG00000031438 Rnf128 ENSMUST00000113029 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000095934 Btbd35f13 ENSMUST00000177912 ENSMUSP00000136662 TRANSLATION protein_coding - CCDS72358.1 - 498.0 0.0 0.8 5.4 40.4 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000061392 Mageb5 ENSMUST00000082048 ENSMUSP00000080706 TRANSLATION protein_coding - CCDS53133.1 1 366.0 0.0 1.0 0.0 25.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000055555 Ct55 ENSMUST00000249228 ENSMUSP00000159611 TRANSLATION protein_coding - - - 185.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0259 - 0.0 ALTERNATIVE:2 ENSMUSG00000055555 Ct55 ENSMUST00000249229 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000055555 Ct55 ENSMUST00000069209 ENSMUSP00000064619 TRANSLATION protein_coding - CCDS30136.1 1 236.0 0.0 0.0 0.1 0.0 0.0 -4,-2 0.9097 - 0.0 PRINCIPAL:2 ENSMUSG00000033578 Tmem35a ENSMUST00000037687 ENSMUSP00000044926 TRANSLATION protein_coding - CCDS30392.1 1 167.0 0.0 2.0 18.3 0.0 0.0 -1,-5 1.0 2 10.0 PRINCIPAL:1 ENSMUSG00000121514 ENSMUSG00000121514 ENSMUST00000249136 ENSMUSP00000159590 TRANSLATION protein_coding - - - 8337.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - 0.0 PRINCIPAL:1 ENSMUSG00000047797 Gjb1 ENSMUST00000119080 ENSMUSP00000113904 TRANSLATION protein_coding - CCDS30314.1 3 283.0 0.0 0.8 23.5 278.4 3.0 -2,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000047797 Gjb1 ENSMUST00000119190 ENSMUSP00000113516 TRANSLATION protein_coding - CCDS30314.1 2 283.0 0.0 0.8 23.5 278.4 3.0 -2,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000047797 Gjb1 ENSMUST00000052130 ENSMUSP00000062723 TRANSLATION protein_coding - CCDS30314.1 1 283.0 0.0 0.8 23.5 278.4 3.0 -2,-6 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000079531 Pwwp4d ENSMUST00000114116 ENSMUSP00000109751 TRANSLATION protein_coding - CCDS53112.1 3 728.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.925 - 0.0 PRINCIPAL:1 ENSMUSG00000042712 Tceal9 ENSMUST00000048687 ENSMUSP00000047474 TRANSLATION protein_coding - CCDS30418.1 1 104.0 0.0 1.0 10.1 72.4 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000042712 Tceal9 ENSMUST00000113115 ENSMUSP00000108740 TRANSLATION protein_coding - CCDS30418.1 2 104.0 0.0 1.0 10.1 72.4 0.0 -4,-5 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000040229 Gpr34 ENSMUST00000041708 ENSMUSP00000042715 TRANSLATION protein_coding - CCDS30028.1 1 375.0 0.0 0.4 2.7 128.0 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000040229 Gpr34 ENSMUST00000096492 ENSMUSP00000094236 TRANSLATION protein_coding - CCDS30028.1 1 375.0 0.0 0.4 2.7 128.0 5.0 -4,-6 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000094802 Samt1 ENSMUST00000178342 ENSMUSP00000137062 TRANSLATION protein_coding - CCDS53227.1 2 237.0 0.0 1.0 0.1 0.0 3.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000094802 Samt1 ENSMUST00000178698 ENSMUSP00000137495 TRANSLATION protein_coding - CCDS53227.1 5 237.0 0.0 1.0 0.1 0.0 3.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000079628 Rhox4g ENSMUST00000115166 ENSMUSP00000110820 TRANSLATION protein_coding - CCDS40940.1 1 205.0 0.0 1.7 0.0 40.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079628 Rhox4g ENSMUST00000184625 - NO_TRANSLATION retained_intron ENSMUSG00000079636 Rhox3c ENSMUST00000123851 ENSMUSP00000121720 TRANSLATION protein_coding start - 1 187.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079636 Rhox3c ENSMUST00000115188 ENSMUSP00000110842 TRANSLATION protein_coding - CCDS53054.1 5 215.0 0.0 1.8 0.0 42.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079636 Rhox3c ENSMUST00000115189 ENSMUSP00000110843 TRANSLATION protein_coding - CCDS53054.1 5 215.0 0.0 1.8 0.0 42.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079636 Rhox3c ENSMUST00000151387 ENSMUSP00000133542 TRANSLATION protein_coding start - 1 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071767 Rhox7a ENSMUST00000184891 ENSMUSP00000138811 TRANSLATION nonsense_mediated_decay start - 5 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071767 Rhox7a ENSMUST00000096454 ENSMUSP00000094193 TRANSLATION protein_coding - CCDS30081.1 1 281.0 0.0 3.35 0.0 82.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000036013 Pabir3 ENSMUST00000114835 ENSMUSP00000110484 TRANSLATION protein_coding - CCDS40973.1 1 180.0 0.0 1.25 0.1 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000036013 Pabir3 ENSMUST00000124137 ENSMUSP00000127499 TRANSLATION nonsense_mediated_decay - CCDS40973.1 2 180.0 0.0 1.25 0.1 0.0 0.0 -4,-5 1.0 - -2.0 MINOR ENSMUSG00000031112 Stk26 ENSMUST00000136741 - NO_TRANSLATION retained_intron ENSMUSG00000031112 Stk26 ENSMUST00000114887 ENSMUSP00000110537 TRANSLATION protein_coding - - 5 392.0 21.0 5.75 0.0 239.4 0.0 -4,-5 0.0579 7 18.0 MINOR ENSMUSG00000031112 Stk26 ENSMUST00000146956 - NO_TRANSLATION retained_intron ENSMUSG00000031112 Stk26 ENSMUST00000033444 ENSMUSP00000033444 TRANSLATION protein_coding - CCDS40968.1 1 416.0 21.0 5.75 27.1 239.4 0.0 -4,-5 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000045010 Gm4779 ENSMUST00000056225 ENSMUSP00000148054 TRANSLATION protein_coding start/stop - 5 224.0 0.0 0.0 0.0 302.3 0.0 -3,-6 0.0014 - -2.0 MINOR ENSMUSG00000045010 Gm4779 ENSMUST00000124577 ENSMUSP00000148132 TRANSLATION nonsense_mediated_decay start - 5 209.0 0.0 0.0 0.0 296.6 0.0 -4,-7 0.0016 - -2.0 MINOR ENSMUSG00000045010 Gm4779 ENSMUST00000147742 ENSMUSP00000147427 TRANSLATION protein_coding - - 5 561.0 0.0 0.0 0.0 585.5 0.0 -4,-5 0.7621 - 6.0 PRINCIPAL:1 ENSMUSG00000043384 Gprasp1 ENSMUST00000113145 ENSMUSP00000108770 TRANSLATION protein_coding - CCDS30409.1 1 1347.0 0.0 0.0 0.1 179.2 0.0 -4,-5 1.0 16 6.0 PRINCIPAL:1 ENSMUSG00000043384 Gprasp1 ENSMUST00000166554 ENSMUSP00000132225 TRANSLATION protein_coding - CCDS30409.1 1 1347.0 0.0 0.0 0.1 179.2 0.0 -4,-5 1.0 16 6.0 PRINCIPAL:1 ENSMUSG00000043384 Gprasp1 ENSMUST00000149595 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043384 Gprasp1 ENSMUST00000113144 ENSMUSP00000108769 TRANSLATION protein_coding - CCDS30409.1 1 1347.0 0.0 0.0 0.1 179.2 0.0 -4,-5 1.0 16 6.0 PRINCIPAL:1 ENSMUSG00000043384 Gprasp1 ENSMUST00000143034 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043384 Gprasp1 ENSMUST00000113147 ENSMUSP00000108772 TRANSLATION protein_coding - CCDS30409.1 1 1347.0 0.0 0.0 0.1 179.2 0.0 -4,-5 1.0 16 6.0 PRINCIPAL:1 ENSMUSG00000042515 Pwwp3b ENSMUST00000170671 ENSMUSP00000129943 TRANSLATION protein_coding stop - 5 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 2 -2.0 MINOR ENSMUSG00000042515 Pwwp3b ENSMUST00000113041 ENSMUSP00000108664 TRANSLATION protein_coding - CCDS30432.2 5 681.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.9166 10 0.0 PRINCIPAL:1 ENSMUSG00000042515 Pwwp3b ENSMUST00000169886 ENSMUSP00000125759 TRANSLATION protein_coding stop - 3 87.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0205 2 -2.0 MINOR ENSMUSG00000042515 Pwwp3b ENSMUST00000113045 ENSMUSP00000108668 TRANSLATION protein_coding - CCDS30432.2 3 681.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.9166 10 0.0 PRINCIPAL:1 ENSMUSG00000042515 Pwwp3b ENSMUST00000113042 ENSMUSP00000108665 TRANSLATION protein_coding - CCDS30432.2 5 681.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.9166 10 0.0 PRINCIPAL:1 ENSMUSG00000042515 Pwwp3b ENSMUST00000139359 - NO_TRANSLATION retained_intron ENSMUSG00000042515 Pwwp3b ENSMUST00000166444 ENSMUSP00000126605 TRANSLATION protein_coding stop - 5 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0321 1 -2.0 MINOR ENSMUSG00000042515 Pwwp3b ENSMUST00000113043 ENSMUSP00000108666 TRANSLATION protein_coding - CCDS30432.2 5 681.0 0.0 0.0 0.4 0.0 0.0 -4,-5 0.9166 10 0.0 PRINCIPAL:1 ENSMUSG00000057836 Xlr3a ENSMUST00000173742 ENSMUSP00000134475 TRANSLATION nonsense_mediated_decay - - 5 49.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000057836 Xlr3a ENSMUST00000174162 - NO_TRANSLATION retained_intron ENSMUSG00000057836 Xlr3a ENSMUST00000173473 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000057836 Xlr3a ENSMUST00000114524 ENSMUSP00000110170 TRANSLATION protein_coding - - 1 226.0 0.0 4.6 0.4 111.2 0.0 -4,-7 0.7422 - 8.0 PRINCIPAL:2 ENSMUSG00000057836 Xlr3a ENSMUST00000074619 ENSMUSP00000074199 TRANSLATION protein_coding - CCDS53092.1 1 221.0 0.0 4.6 0.4 111.2 0.0 -4,-6 0.4084 - 8.0 ALTERNATIVE:2 ENSMUSG00000057836 Xlr3a ENSMUST00000172709 - NO_TRANSLATION retained_intron ENSMUSG00000057836 Xlr3a ENSMUST00000172938 ENSMUSP00000134647 TRANSLATION nonsense_mediated_decay start - 3 33.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073006 Wmp ENSMUST00000101290 ENSMUSP00000098848 TRANSLATION protein_coding - CCDS30352.1 1 516.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8918 - 0.0 PRINCIPAL:1 ENSMUSG00000073006 Wmp ENSMUST00000155294 ENSMUSP00000114213 TRANSLATION protein_coding start/stop - 2 156.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0216 - -2.0 MINOR ENSMUSG00000051579 Tceal8 ENSMUST00000060101 ENSMUSP00000056189 TRANSLATION protein_coding - CCDS30415.1 1 117.0 0.0 1.0 11.0 88.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000051579 Tceal8 ENSMUST00000136533 ENSMUSP00000118747 TRANSLATION protein_coding stop - 2 11.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051579 Tceal8 ENSMUST00000146583 ENSMUSP00000122143 TRANSLATION protein_coding stop - 3 46.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051579 Tceal8 ENSMUST00000163584 ENSMUSP00000129591 TRANSLATION protein_coding - CCDS30415.1 3 117.0 0.0 1.0 11.0 88.0 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000043569 Cldn34c4 ENSMUST00000052500 ENSMUSP00000062601 TRANSLATION protein_coding - CCDS59775.1 1 212.0 0.0 0.6 0.1 29.7 0.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000090141 Gm614 ENSMUST00000125656 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090141 Gm614 ENSMUST00000101358 ENSMUSP00000098910 TRANSLATION protein_coding - CCDS30311.1 1 191.0 0.0 3.83 2.0 118.2 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031292 Cdkl5 ENSMUST00000198931 ENSMUSP00000143726 TRANSLATION protein_coding - - 5 960.0 18.0 7.88 12.5 251.4 0.0 -4,-5 1.0 22 21.0 PRINCIPAL:1 ENSMUSG00000031292 Cdkl5 ENSMUST00000112355 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031292 Cdkl5 ENSMUST00000197942 ENSMUSP00000143137 TRANSLATION nonsense_mediated_decay - - 5 862.0 18.0 7.88 0.0 251.4 0.0 -4,-5 0.1024 20 -2.0 MINOR ENSMUSG00000031292 Cdkl5 ENSMUST00000196297 ENSMUSP00000143057 TRANSLATION nonsense_mediated_decay - - 5 923.0 18.0 7.88 0.0 251.4 0.0 -4,-5 0.118 21 -2.0 MINOR ENSMUSG00000031292 Cdkl5 ENSMUST00000199927 - NO_TRANSLATION retained_intron ENSMUSG00000031292 Cdkl5 ENSMUST00000087104 ENSMUSP00000084342 TRANSLATION protein_coding - CCDS53238.1 1 938.0 18.0 7.88 0.0 251.4 0.0 -4,-5 0.2742 21 18.0 MINOR ENSMUSG00000079317 Trappc2 ENSMUST00000154573 - NO_TRANSLATION retained_intron ENSMUSG00000079317 Trappc2 ENSMUST00000112194 ENSMUSP00000107813 TRANSLATION protein_coding - CCDS41208.1 5 140.0 0.0 3.83 35.8 169.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000079317 Trappc2 ENSMUST00000112192 ENSMUSP00000107811 TRANSLATION protein_coding - CCDS85828.1 1 72.0 0.0 2.0 0.0 71.3 0.0 -4,-5 0.0017 - 2.43 MINOR ENSMUSG00000079317 Trappc2 ENSMUST00000116495 ENSMUSP00000112195 TRANSLATION protein_coding - CCDS41208.1 1 140.0 0.0 3.83 35.8 169.8 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031246 Sh3bgrl ENSMUST00000033598 ENSMUSP00000033598 TRANSLATION protein_coding - CCDS41102.1 1 114.0 0.0 2.58 26.8 153.0 0.0 -4,-7 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000031246 Sh3bgrl ENSMUST00000133614 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031246 Sh3bgrl ENSMUST00000126097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000081044 AU015836 ENSMUST00000124180 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000081044 AU015836 ENSMUST00000120624 ENSMUSP00000112921 TRANSLATION protein_coding - - 3 112.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0235 - 0.0 ALTERNATIVE:2 ENSMUSG00000081044 AU015836 ENSMUST00000149545 ENSMUSP00000121062 TRANSLATION nonsense_mediated_decay - - 5 102.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - -2.0 MINOR ENSMUSG00000081044 AU015836 ENSMUST00000121565 ENSMUSP00000112835 TRANSLATION protein_coding - - 1 102.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:2 ENSMUSG00000050029 Rap2c ENSMUST00000053593 ENSMUSP00000058391 TRANSLATION protein_coding - CCDS30121.1 1 183.0 24.0 2.0 36.9 188.5 0.0 -4,-6 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000046873 Mbtps2 ENSMUST00000065857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046873 Mbtps2 ENSMUST00000134211 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000046873 Mbtps2 ENSMUST00000152826 - NO_TRANSLATION retained_intron ENSMUSG00000046873 Mbtps2 ENSMUST00000112522 ENSMUSP00000108141 TRANSLATION protein_coding - - 2 220.0 3.0 0.0 0.0 0.0 3.0 1,-3 0.007 - 0.0 MINOR ENSMUSG00000046873 Mbtps2 ENSMUST00000139786 - NO_TRANSLATION retained_intron ENSMUSG00000046873 Mbtps2 ENSMUST00000149249 ENSMUSP00000118134 TRANSLATION protein_coding stop - 2 110.0 3.0 0.0 0.0 0.0 1.0 0,-4 0.0025 - -2.0 MINOR ENSMUSG00000046873 Mbtps2 ENSMUST00000179062 ENSMUSP00000137233 TRANSLATION protein_coding - CCDS53233.1 2 378.0 16.0 0.6 0.1 58.4 0.0 -4,-5 0.9273 - 18.0 PRINCIPAL:1 ENSMUSG00000046873 Mbtps2 ENSMUST00000058098 ENSMUSP00000059471 TRANSLATION protein_coding - CCDS30498.1 1 515.0 3.0 0.0 8.1 0.0 6.0 1,-3 1.0 1 3.0 MINOR ENSMUSG00000034555 Tex16 ENSMUST00000131304 ENSMUSP00000117689 TRANSLATION protein_coding start - 5 1435.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.7204 - -2.0 PRINCIPAL:1 ENSMUSG00000025332 Kdm5c ENSMUST00000112584 ENSMUSP00000108203 TRANSLATION protein_coding - - 5 1554.0 19.0 11.95 0.4 695.2 0.0 -4,-5 0.6895 16 14.0 ALTERNATIVE:2 ENSMUSG00000025332 Kdm5c ENSMUST00000156114 ENSMUSP00000122750 TRANSLATION protein_coding start/stop - 3 257.0 8.0 0.0 0.0 97.0 0.0 -4,-5 0.0005 1 -2.0 MINOR ENSMUSG00000025332 Kdm5c ENSMUST00000154938 - NO_TRANSLATION retained_intron ENSMUSG00000025332 Kdm5c ENSMUST00000112588 ENSMUSP00000108207 TRANSLATION protein_coding - CCDS41178.1 1 1551.0 19.0 11.95 0.4 695.2 0.0 -4,-5 1.0 16 14.0 PRINCIPAL:2 ENSMUSG00000025332 Kdm5c ENSMUST00000155793 ENSMUSP00000123364 TRANSLATION protein_coding start - 2 177.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025332 Kdm5c ENSMUST00000082177 ENSMUSP00000080814 TRANSLATION protein_coding - - 5 1510.0 19.0 10.95 0.1 665.7 0.0 -4,-5 0.1759 15 11.602 MINOR ENSMUSG00000019088 Dnase1l1 ENSMUST00000119361 ENSMUSP00000113515 TRANSLATION protein_coding stop - 3 64.0 0.0 1.5 0.0 0.0 0.0 4,-1 0.0044 - -2.0 MINOR ENSMUSG00000019088 Dnase1l1 ENSMUST00000019232 ENSMUSP00000019232 TRANSLATION protein_coding - CCDS30223.1 1 314.0 8.0 7.25 0.0 55.6 0.0 2,-3 0.3472 2 12.0 ALTERNATIVE:2 ENSMUSG00000019088 Dnase1l1 ENSMUST00000239445 ENSMUSP00000159293 TRANSLATION protein_coding - CCDS30223.1 - 314.0 8.0 7.25 0.0 55.6 0.0 2,-3 0.3472 2 12.0 ALTERNATIVE:2 ENSMUSG00000019088 Dnase1l1 ENSMUST00000239458 ENSMUSP00000159292 TRANSLATION protein_coding - - - 296.0 8.0 7.25 0.0 55.6 0.0 4,-1 0.8235 2 12.0 PRINCIPAL:2 ENSMUSG00000019088 Dnase1l1 ENSMUST00000148882 - NO_TRANSLATION retained_intron ENSMUSG00000019088 Dnase1l1 ENSMUST00000128763 - NO_TRANSLATION retained_intron ENSMUSG00000019088 Dnase1l1 ENSMUST00000075821 ENSMUSP00000075218 TRANSLATION protein_coding - - 1 296.0 8.0 7.25 0.0 55.6 0.0 4,-1 0.8235 2 12.0 PRINCIPAL:2 ENSMUSG00000019088 Dnase1l1 ENSMUST00000114189 ENSMUSP00000109827 TRANSLATION protein_coding - - 3 86.0 1.0 2.0 0.0 0.0 0.0 4,-1 0.0025 - 0.75 MINOR ENSMUSG00000032806 Slc10a3 ENSMUST00000114146 ENSMUSP00000109783 TRANSLATION protein_coding - CCDS30231.1 5 473.0 0.0 0.6 5.3 147.5 13.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032806 Slc10a3 ENSMUST00000114147 ENSMUSP00000109784 TRANSLATION protein_coding - - 5 444.0 0.0 0.6 1.0 147.5 13.0 -4,-2 0.3165 - 12.0 MINOR ENSMUSG00000032806 Slc10a3 ENSMUST00000073067 ENSMUSP00000072818 TRANSLATION protein_coding - CCDS30231.1 1 473.0 0.0 0.6 5.3 147.5 13.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000032806 Slc10a3 ENSMUST00000037967 ENSMUSP00000045150 TRANSLATION protein_coding - CCDS30231.1 1 473.0 0.0 0.6 5.3 147.5 13.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000046180 Magea13 ENSMUST00000062542 ENSMUSP00000051134 TRANSLATION protein_coding - CCDS40985.1 1 320.0 0.0 0.6 0.4 0.0 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000046180 Magea13 ENSMUST00000118305 ENSMUSP00000113812 TRANSLATION protein_coding - CCDS40985.1 3 320.0 0.0 0.6 0.4 0.0 0.0 -4,-5 1.0 3 6.0 PRINCIPAL:1 ENSMUSG00000054994 Pramel3e ENSMUST00000068340 ENSMUSP00000068753 TRANSLATION protein_coding - - 1 462.0 0.0 1.26 0.4 0.0 0.0 -4,-5 0.69 - 6.0 PRINCIPAL:1 ENSMUSG00000079525 Cldn34d ENSMUST00000114054 ENSMUSP00000109688 TRANSLATION protein_coding - CCDS53117.1 1 210.0 0.0 0.6 0.4 48.1 0.0 0,-4 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000109745 Fam236c ENSMUST00000211116 ENSMUSP00000147946 TRANSLATION protein_coding - - 1 66.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000073257 Gm10488 ENSMUST00000101657 ENSMUSP00000099180 TRANSLATION protein_coding - CCDS53032.1 1 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000015291 Gdi1 ENSMUST00000145580 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015291 Gdi1 ENSMUST00000135041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015291 Gdi1 ENSMUST00000137447 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015291 Gdi1 ENSMUST00000128915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000015291 Gdi1 ENSMUST00000149391 - NO_TRANSLATION retained_intron ENSMUSG00000015291 Gdi1 ENSMUST00000144317 - NO_TRANSLATION retained_intron ENSMUSG00000015291 Gdi1 ENSMUST00000015435 ENSMUSP00000015435 TRANSLATION protein_coding - CCDS30227.1 1 447.0 0.0 10.83 34.9 803.3 0.0 -4,-5 1.0 23 16.0 PRINCIPAL:1 ENSMUSG00000015291 Gdi1 ENSMUST00000146013 - NO_TRANSLATION retained_intron ENSMUSG00000015291 Gdi1 ENSMUST00000153141 ENSMUSP00000119805 TRANSLATION protein_coding stop - 5 78.0 0.0 2.25 0.0 124.7 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000015291 Gdi1 ENSMUST00000130581 ENSMUSP00000122146 TRANSLATION protein_coding start - 5 149.0 0.0 3.0 0.0 105.7 0.0 -4,-5 0.0 7 -2.0 MINOR ENSMUSG00000037086 Prr32 ENSMUST00000040002 ENSMUSP00000038655 TRANSLATION protein_coding - CCDS53063.1 1 284.0 0.0 0.0 0.4 454.8 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000035491 Fthl17a ENSMUST00000048382 ENSMUSP00000045007 TRANSLATION protein_coding - CCDS53125.1 1 182.0 0.0 1.0 1.1 87.4 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031273 Col4a6 ENSMUST00000151459 - NO_TRANSLATION retained_intron ENSMUSG00000031273 Col4a6 ENSMUST00000101205 ENSMUSP00000098765 TRANSLATION protein_coding - CCDS41153.1 1 1691.0 0.0 14.8535 6.9 771.9 0.0 2,-2 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000031273 Col4a6 ENSMUST00000137051 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006423 Steep1 ENSMUST00000115248 ENSMUSP00000110903 TRANSLATION protein_coding - CCDS53050.1 1 222.0 4.0 3.1 32.9 0.0 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000006423 Steep1 ENSMUST00000047486 ENSMUSP00000040134 TRANSLATION protein_coding - CCDS53050.1 1 222.0 4.0 3.1 32.9 0.0 0.0 -4,-5 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000006423 Steep1 ENSMUST00000127966 - NO_TRANSLATION retained_intron ENSMUSG00000006423 Steep1 ENSMUST00000143544 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006423 Steep1 ENSMUST00000150873 - NO_TRANSLATION retained_intron ENSMUSG00000006423 Steep1 ENSMUST00000115249 ENSMUSP00000110904 TRANSLATION protein_coding - - 5 227.0 4.0 3.1 0.0 0.0 0.0 -4,-5 0.0645 3 10.0 MINOR ENSMUSG00000079629 Rhox2g ENSMUST00000183888 ENSMUSP00000139146 TRANSLATION protein_coding start - 2 91.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079629 Rhox2g ENSMUST00000115169 ENSMUSP00000110823 TRANSLATION protein_coding - CCDS53059.1 1 191.0 0.0 1.4 0.0 45.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000040147 Maob ENSMUST00000173143 ENSMUSP00000134555 TRANSLATION nonsense_mediated_decay - - 5 35.0 8.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040147 Maob ENSMUST00000040820 ENSMUSP00000040550 TRANSLATION protein_coding - CCDS40882.1 1 520.0 37.0 13.83 17.8 244.3 0.0 -4,-5 1.0 13 22.0 PRINCIPAL:1 ENSMUSG00000040147 Maob ENSMUST00000163344 ENSMUSP00000131743 TRANSLATION nonsense_mediated_decay - - 5 112.0 18.0 2.7 0.0 72.6 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000040147 Maob ENSMUST00000168613 ENSMUSP00000127235 TRANSLATION nonsense_mediated_decay - - 5 211.0 18.0 5.75 0.0 79.3 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000071771 Rhox4b ENSMUST00000096458 ENSMUSP00000094197 TRANSLATION protein_coding - CCDS30077.1 1 205.0 0.0 1.7 0.0 40.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071771 Rhox4b ENSMUST00000122828 - NO_TRANSLATION retained_intron ENSMUSG00000068219 Ssxb10 ENSMUST00000103003 ENSMUSP00000100068 TRANSLATION protein_coding - CCDS29995.1 1 170.0 0.0 2.0 0.0 81.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031182 4930447F04Rik ENSMUST00000033525 ENSMUSP00000033525 TRANSLATION protein_coding - - 1 126.0 0.0 1.0 0.0 0.0 0.0 -4,-2 0.6907 - 6.0 PRINCIPAL:1 ENSMUSG00000068270 Shroom4 ENSMUST00000143641 ENSMUSP00000131806 TRANSLATION protein_coding stop - 3 200.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068270 Shroom4 ENSMUST00000089520 ENSMUSP00000086949 TRANSLATION protein_coding - CCDS85744.1 1 1359.0 0.0 2.0 0.0 322.7 0.0 -4,-5 0.3637 16 7.002 MINOR ENSMUSG00000068270 Shroom4 ENSMUST00000103005 ENSMUSP00000100070 TRANSLATION protein_coding - CCDS29959.1 1 1475.0 0.0 4.5 0.0 322.7 0.0 -4,-5 1.0 16 12.0 PRINCIPAL:1 ENSMUSG00000080725 Gm6121 ENSMUST00000167438 ENSMUSP00000133203 TRANSLATION protein_coding - CCDS53028.1 5 212.0 0.0 2.5 0.0 38.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000080725 Gm6121 ENSMUST00000119231 ENSMUSP00000112771 TRANSLATION protein_coding - CCDS53028.1 5 212.0 0.0 2.5 0.0 38.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042903 Foxo4 ENSMUST00000062000 ENSMUSP00000059420 TRANSLATION protein_coding - CCDS41077.1 1 505.0 0.0 1.6 9.8 181.0 0.0 -4,-5 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000042903 Foxo4 ENSMUST00000138437 ENSMUSP00000116165 TRANSLATION protein_coding stop - 5 448.0 0.0 1.0 1.0 165.4 0.0 -4,-5 0.0329 1 -2.0 MINOR ENSMUSG00000042903 Foxo4 ENSMUST00000150558 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045180 Shroom2 ENSMUST00000101141 ENSMUSP00000098701 TRANSLATION protein_coding - CCDS41179.1 1 1487.0 0.0 4.0 0.1 613.7 0.0 -4,-5 1.0 34 8.0 PRINCIPAL:2 ENSMUSG00000045180 Shroom2 ENSMUST00000141677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045180 Shroom2 ENSMUST00000124141 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045180 Shroom2 ENSMUST00000137217 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045180 Shroom2 ENSMUST00000152746 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000045180 Shroom2 ENSMUST00000062317 ENSMUSP00000057500 TRANSLATION protein_coding - CCDS72455.1 1 1481.0 0.0 4.0 0.1 613.7 0.0 -4,-5 0.7141 34 8.0 ALTERNATIVE:2 ENSMUSG00000100448 H2al1k ENSMUST00000178196 ENSMUSP00000137043 TRANSLATION protein_coding - CCDS52997.1 - 105.0 0.0 1.0 0.0 41.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000044583 Tlr7 ENSMUST00000137492 ENSMUSP00000120922 TRANSLATION protein_coding stop - 3 47.0 0.0 0.0 0.0 0.0 0.0 3,-3 0.0 - -2.0 MINOR ENSMUSG00000044583 Tlr7 ENSMUST00000145284 ENSMUSP00000114305 TRANSLATION protein_coding stop - 2 49.0 0.0 0.4 0.0 0.0 0.0 4,-3 0.0007 - -2.0 MINOR ENSMUSG00000044583 Tlr7 ENSMUST00000149507 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044583 Tlr7 ENSMUST00000060719 ENSMUSP00000061853 TRANSLATION protein_coding - CCDS30531.1 1 1050.0 0.0 1.2 9.0 209.1 1.0 4,-3 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000044583 Tlr7 ENSMUST00000112161 ENSMUSP00000107787 TRANSLATION protein_coding - CCDS72469.1 1 1050.0 0.0 1.2 9.0 209.1 1.0 4,-3 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000044583 Tlr7 ENSMUST00000112164 ENSMUSP00000107789 TRANSLATION protein_coding - CCDS30531.1 1 1050.0 0.0 1.2 9.0 209.1 1.0 4,-3 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000034055 Phka1 ENSMUST00000119229 ENSMUSP00000114066 TRANSLATION protein_coding - - 5 1211.0 3.0 12.25 8.1 642.2 0.0 -4,-1 0.8526 20 11.34 ALTERNATIVE:1 ENSMUSG00000034055 Phka1 ENSMUST00000142534 - NO_TRANSLATION retained_intron ENSMUSG00000034055 Phka1 ENSMUST00000120270 ENSMUSP00000113302 TRANSLATION protein_coding - - 5 1224.0 3.0 12.25 10.1 642.2 0.0 -4,-1 0.9397 20 12.0 ALTERNATIVE:1 ENSMUSG00000034055 Phka1 ENSMUST00000113611 ENSMUSP00000109241 TRANSLATION protein_coding - - 5 1224.0 3.0 12.25 10.1 642.2 0.0 -4,-1 0.9397 20 12.0 ALTERNATIVE:1 ENSMUSG00000034055 Phka1 ENSMUST00000122022 ENSMUSP00000112529 TRANSLATION protein_coding - - 5 1241.0 3.0 12.25 8.2 642.2 0.0 -4,-1 0.8411 20 11.373 ALTERNATIVE:1 ENSMUSG00000034055 Phka1 ENSMUST00000052012 ENSMUSP00000061991 TRANSLATION protein_coding - CCDS30323.1 1 1241.0 3.0 12.25 8.2 642.2 0.0 -4,-1 1.0 20 11.373 PRINCIPAL:4 ENSMUSG00000034055 Phka1 ENSMUST00000043596 ENSMUSP00000042778 TRANSLATION protein_coding - CCDS30324.1 1 1182.0 3.0 12.25 6.4 642.5 0.0 -4,-1 0.943 19 10.779 MINOR ENSMUSG00000035725 Prkx ENSMUST00000114044 ENSMUSP00000109678 TRANSLATION protein_coding - - 1 237.0 18.0 3.48 0.0 203.7 0.0 -4,-5 0.0021 4 10.464 MINOR ENSMUSG00000035725 Prkx ENSMUST00000036333 ENSMUSP00000045304 TRANSLATION protein_coding - CCDS30248.1 1 355.0 18.0 6.73 2.4 229.3 0.0 -4,-5 1.0 4 19.0 PRINCIPAL:1 ENSMUSG00000025665 Rps6ka6 ENSMUST00000096348 ENSMUSP00000094073 TRANSLATION protein_coding - - 2 764.0 38.0 17.01 0.7 501.0 0.0 -4,-5 0.3084 1 18.0 MINOR ENSMUSG00000025665 Rps6ka6 ENSMUST00000065976 ENSMUSP00000068483 TRANSLATION protein_coding - - 1 720.0 38.0 16.21 0.0 462.9 0.0 -4,-5 0.0424 1 14.112 MINOR ENSMUSG00000025665 Rps6ka6 ENSMUST00000123213 ENSMUSP00000118075 TRANSLATION protein_coding stop - 3 146.0 8.0 2.55 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025665 Rps6ka6 ENSMUST00000113428 ENSMUSP00000109055 TRANSLATION protein_coding - - 5 759.0 38.0 17.01 0.0 482.8 0.0 -4,-5 0.1122 1 16.908 MINOR ENSMUSG00000025665 Rps6ka6 ENSMUST00000132319 ENSMUSP00000120611 TRANSLATION protein_coding stop - 5 166.0 0.0 0.3 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000025665 Rps6ka6 ENSMUST00000137712 ENSMUSP00000121722 TRANSLATION protein_coding - - 5 743.0 38.0 16.71 4.9 501.0 0.0 -4,-5 1.0 1 19.4 PRINCIPAL:1 ENSMUSG00000025665 Rps6ka6 ENSMUST00000128819 ENSMUSP00000117228 TRANSLATION protein_coding stop - 5 203.0 4.0 1.3 0.0 0.0 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000025665 Rps6ka6 ENSMUST00000138645 ENSMUSP00000121489 TRANSLATION protein_coding start/stop - 3 162.0 8.0 2.88 0.0 32.4 0.0 -4,0 0.0 - -2.0 MINOR ENSMUSG00000025665 Rps6ka6 ENSMUST00000123102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025665 Rps6ka6 ENSMUST00000156639 ENSMUSP00000121075 TRANSLATION protein_coding stop - 5 130.0 0.0 0.0 0.0 0.0 0.0 -4,0 0.0005 - -2.0 MINOR ENSMUSG00000025665 Rps6ka6 ENSMUST00000123951 ENSMUSP00000115975 TRANSLATION protein_coding - CCDS30356.1 2 860.0 38.0 17.01 0.1 501.0 0.0 -4,0 0.3625 1 18.0 MINOR ENSMUSG00000000402 Egfl6 ENSMUST00000000412 ENSMUSP00000000412 TRANSLATION protein_coding - CCDS30528.1 1 550.0 20.0 5.43 3.8 189.0 0.0 3,-2 1.0 3 19.0 PRINCIPAL:1 ENSMUSG00000079418 Atg4a ENSMUST00000112971 ENSMUSP00000108595 TRANSLATION protein_coding - CCDS85810.1 1 396.0 0.0 8.3 7.7 332.2 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000079418 Atg4a ENSMUST00000239541 ENSMUSP00000159430 TRANSLATION protein_coding - - - 372.0 0.0 7.55 0.0 299.5 0.0 -4,-7 0.0128 1 8.538 MINOR ENSMUSG00000079418 Atg4a ENSMUST00000239542 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079418 Atg4a ENSMUST00000153742 ENSMUSP00000159431 TRANSLATION nonsense_mediated_decay - - 5 88.0 0.0 0.8 0.0 0.0 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000079418 Atg4a ENSMUST00000239544 ENSMUSP00000159432 TRANSLATION nonsense_mediated_decay - - - 213.0 0.0 3.05 0.0 127.7 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000079418 Atg4a ENSMUST00000239543 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079418 Atg4a ENSMUST00000147972 - NO_TRANSLATION retained_intron ENSMUSG00000073001 Cylc1 ENSMUST00000210720 ENSMUSP00000147334 TRANSLATION protein_coding - - 5 642.0 0.0 0.0 0.0 127.0 0.0 -4,-5 0.7516 1 6.0 PRINCIPAL:1 ENSMUSG00000071686 Tex13a ENSMUST00000096314 ENSMUSP00000094038 TRANSLATION protein_coding - CCDS41142.1 1 377.0 4.0 1.0 0.4 207.7 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031220 Awat2 ENSMUST00000147103 ENSMUSP00000128516 TRANSLATION protein_coding - CCDS72412.1 1 282.0 0.0 5.25 0.0 340.0 0.0 -4,-2 0.0204 - 8.256 MINOR ENSMUSG00000031220 Awat2 ENSMUST00000033567 ENSMUSP00000033567 TRANSLATION protein_coding - CCDS30300.1 1 333.0 0.0 6.75 6.5 352.4 0.0 -3,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031389 Arhgap4 ENSMUST00000130976 ENSMUSP00000120650 TRANSLATION nonsense_mediated_decay - - 1 847.0 0.0 11.0956 0.0 244.9 0.0 -4,-6 0.074 15 -2.0 MINOR ENSMUSG00000031389 Arhgap4 ENSMUST00000128329 - NO_TRANSLATION retained_intron ENSMUSG00000031389 Arhgap4 ENSMUST00000148319 - NO_TRANSLATION retained_intron ENSMUSG00000031389 Arhgap4 ENSMUST00000127163 - NO_TRANSLATION retained_intron ENSMUSG00000031389 Arhgap4 ENSMUST00000149774 ENSMUSP00000115193 TRANSLATION protein_coding start/stop - 5 274.0 0.0 3.988 0.0 127.3 0.0 -4,-2 0.0 5 -2.0 MINOR ENSMUSG00000031389 Arhgap4 ENSMUST00000147510 - NO_TRANSLATION retained_intron ENSMUSG00000031389 Arhgap4 ENSMUST00000140393 ENSMUSP00000117602 TRANSLATION nonsense_mediated_decay - - 5 605.0 0.0 7.2676 0.0 50.8 0.0 -4,-6 0.0 12 -2.0 MINOR ENSMUSG00000031389 Arhgap4 ENSMUST00000064376 ENSMUSP00000067477 TRANSLATION protein_coding - CCDS41014.1 1 955.0 0.0 11.0956 2.3 244.9 0.0 -4,-6 1.0 18 13.0 PRINCIPAL:1 ENSMUSG00000031389 Arhgap4 ENSMUST00000145159 - NO_TRANSLATION retained_intron ENSMUSG00000031389 Arhgap4 ENSMUST00000114407 ENSMUSP00000110049 TRANSLATION protein_coding - CCDS53100.1 1 934.0 0.0 10.4956 0.1 244.9 0.0 -4,-6 0.2487 18 10.8 MINOR ENSMUSG00000031389 Arhgap4 ENSMUST00000123283 ENSMUSP00000122794 TRANSLATION nonsense_mediated_decay - - 3 44.0 0.0 0.45 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000031389 Arhgap4 ENSMUST00000142925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031389 Arhgap4 ENSMUST00000151600 - NO_TRANSLATION retained_intron ENSMUSG00000031389 Arhgap4 ENSMUST00000143536 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031389 Arhgap4 ENSMUST00000114404 ENSMUSP00000110046 TRANSLATION protein_coding - CCDS53101.1 1 944.0 0.0 10.7656 0.0 205.1 0.0 -4,-6 0.1742 18 8.952 MINOR ENSMUSG00000031389 Arhgap4 ENSMUST00000143696 ENSMUSP00000114877 TRANSLATION protein_coding start/stop - 5 199.0 0.0 3.993 0.0 136.3 0.0 -4,-7 0.0 2 -2.0 MINOR ENSMUSG00000031389 Arhgap4 ENSMUST00000124798 ENSMUSP00000121215 TRANSLATION protein_coding start/stop - 5 214.0 0.0 3.15 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031389 Arhgap4 ENSMUST00000114406 ENSMUSP00000110048 TRANSLATION protein_coding - - 1 767.0 0.0 9.2956 0.0 244.9 0.0 -4,-6 0.0316 16 8.4 MINOR ENSMUSG00000031389 Arhgap4 ENSMUST00000149135 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031389 Arhgap4 ENSMUST00000114405 ENSMUSP00000110047 TRANSLATION protein_coding - - 5 965.0 0.0 10.8481 0.1 244.9 0.0 -4,-6 0.1859 18 11.508 MINOR ENSMUSG00000072100 Cldn34b1 ENSMUST00000096852 ENSMUSP00000094615 TRANSLATION protein_coding - CCDS53231.1 1 209.0 0.0 0.6 0.4 42.5 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000023070 Rgn ENSMUST00000023832 ENSMUSP00000023832 TRANSLATION protein_coding - CCDS30043.1 1 299.0 5.0 5.5 35.8 260.5 0.0 -4,-5 1.0 15 21.0 PRINCIPAL:1 ENSMUSG00000079635 Rhox4c ENSMUST00000115183 ENSMUSP00000110837 TRANSLATION protein_coding - CCDS40933.1 1 205.0 0.0 1.7 0.0 39.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079635 Rhox4c ENSMUST00000173214 - NO_TRANSLATION retained_intron ENSMUSG00000006678 Pola1 ENSMUST00000127718 - NO_TRANSLATION retained_intron ENSMUSG00000006678 Pola1 ENSMUST00000006856 ENSMUSP00000006856 TRANSLATION protein_coding - CCDS30272.1 1 1465.0 15.0 23.58 8.5 923.9 0.0 -4,-5 1.0 18 21.0 PRINCIPAL:1 ENSMUSG00000006678 Pola1 ENSMUST00000142479 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000006678 Pola1 ENSMUST00000124236 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031104 Rab33a ENSMUST00000033430 ENSMUSP00000033430 TRANSLATION protein_coding - CCDS30110.1 1 237.0 21.0 2.0 13.2 170.7 0.0 -4,-7 1.0 7 22.0 PRINCIPAL:1 ENSMUSG00000047230 Cldn2 ENSMUST00000172779 ENSMUSP00000134644 TRANSLATION protein_coding stop - 3 2.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0212 - -2.0 MINOR ENSMUSG00000047230 Cldn2 ENSMUST00000054889 ENSMUSP00000054219 TRANSLATION protein_coding - CCDS30437.1 1 230.0 0.0 1.2 17.2 76.7 4.0 2,-3 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000047230 Cldn2 ENSMUST00000135224 ENSMUSP00000121152 TRANSLATION protein_coding stop - 3 131.0 0.0 0.8 0.0 50.7 2.0 2,-3 0.0035 - -2.0 MINOR ENSMUSG00000031278 Acsl4 ENSMUST00000112907 ENSMUSP00000108528 TRANSLATION protein_coding - CCDS30448.1 1 711.0 24.0 6.21 25.9 351.0 1.0 -1,-5 1.0 14 16.0 PRINCIPAL:4 ENSMUSG00000031278 Acsl4 ENSMUST00000033634 ENSMUSP00000033634 TRANSLATION protein_coding - CCDS30448.1 1 711.0 24.0 6.21 25.9 351.0 1.0 -1,-5 1.0 14 16.0 PRINCIPAL:4 ENSMUSG00000031278 Acsl4 ENSMUST00000112903 ENSMUSP00000108524 TRANSLATION protein_coding - CCDS41156.1 1 670.0 24.0 6.21 23.1 351.0 0.0 -4,-5 0.9569 14 15.552 ALTERNATIVE:1 ENSMUSG00000031278 Acsl4 ENSMUST00000140520 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031278 Acsl4 ENSMUST00000112904 ENSMUSP00000108525 TRANSLATION protein_coding - CCDS41156.1 1 670.0 24.0 6.21 23.1 351.0 0.0 -4,-5 0.9569 14 15.552 ALTERNATIVE:1 ENSMUSG00000067377 Tspan6 ENSMUST00000087557 ENSMUSP00000084838 TRANSLATION protein_coding - CCDS30387.1 1 245.0 0.0 4.135 23.2 175.0 9.0 -2,-5 1.0 5 16.0 PRINCIPAL:1 ENSMUSG00000067377 Tspan6 ENSMUST00000176718 ENSMUSP00000135005 TRANSLATION protein_coding stop - 5 199.0 0.0 3.505 0.0 101.8 9.0 -2,-5 0.006 1 -2.0 MINOR ENSMUSG00000067377 Tspan6 ENSMUST00000176641 ENSMUSP00000135626 TRANSLATION protein_coding stop - 5 166.0 0.0 2.955 0.0 91.8 4.0 -3,-5 0.0049 4 -2.0 MINOR ENSMUSG00000067377 Tspan6 ENSMUST00000177468 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016427 Ndufa1 ENSMUST00000016571 ENSMUSP00000016571 TRANSLATION protein_coding - CCDS40928.1 1 70.0 0.0 2.33 31.1 77.8 0.0 1,-3 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000025264 Tsr2 ENSMUST00000112683 ENSMUSP00000108303 TRANSLATION protein_coding - CCDS30468.2 1 192.0 0.0 3.83 9.9 89.4 0.0 -4,-5 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000025264 Tsr2 ENSMUST00000166689 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025264 Tsr2 ENSMUST00000026295 ENSMUSP00000026295 TRANSLATION protein_coding - CCDS53222.1 2 195.0 0.0 3.83 9.9 89.4 0.0 -4,-5 0.9726 5 11.0 ALTERNATIVE:1 ENSMUSG00000025264 Tsr2 ENSMUST00000166010 ENSMUSP00000131835 TRANSLATION nonsense_mediated_decay - - 1 35.0 0.0 0.75 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031330 Zcchc13 ENSMUST00000033692 ENSMUSP00000033692 TRANSLATION protein_coding - CCDS30329.1 - 170.0 28.0 0.6 20.5 207.7 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000051224 Tceanc ENSMUST00000180322 ENSMUSP00000136691 TRANSLATION protein_coding - CCDS53249.1 - 359.0 4.0 0.32 2.2 128.1 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000051224 Tceanc ENSMUST00000112187 ENSMUSP00000107805 TRANSLATION protein_coding stop - 3 35.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000051224 Tceanc ENSMUST00000112188 ENSMUSP00000107806 TRANSLATION protein_coding - CCDS53249.1 1 359.0 4.0 0.32 2.2 128.1 0.0 -4,-5 1.0 - 17.0 PRINCIPAL:1 ENSMUSG00000035232 Pdk3 ENSMUST00000045748 ENSMUSP00000036604 TRANSLATION protein_coding - CCDS30275.1 1 415.0 26.0 10.25 11.5 219.5 0.0 -4,0 1.0 12 21.0 PRINCIPAL:1 ENSMUSG00000035232 Pdk3 ENSMUST00000154717 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035232 Pdk3 ENSMUST00000134502 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044206 Vsig4 ENSMUST00000146830 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000044206 Vsig4 ENSMUST00000050707 ENSMUSP00000051521 TRANSLATION protein_coding - CCDS30288.1 1 280.0 0.0 1.4 0.1 40.9 0.0 2,-2 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000039382 Wdr45 ENSMUST00000208524 ENSMUSP00000146911 TRANSLATION nonsense_mediated_decay - - 5 45.0 0.0 1.15 0.0 0.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000115687 ENSMUSP00000111351 TRANSLATION protein_coding - CCDS29970.1 1 360.0 0.0 7.19 30.0 18.8 0.0 -4,-6 1.0 8 12.628 PRINCIPAL:1 ENSMUSG00000039382 Wdr45 ENSMUST00000127847 - NO_TRANSLATION retained_intron ENSMUSG00000039382 Wdr45 ENSMUST00000155914 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039382 Wdr45 ENSMUST00000208517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039382 Wdr45 ENSMUST00000124707 - NO_TRANSLATION retained_intron ENSMUSG00000039382 Wdr45 ENSMUST00000208443 ENSMUSP00000146886 TRANSLATION protein_coding - - 5 289.0 0.0 6.16 0.0 0.0 0.0 -4,-6 0.0034 7 3.942 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000137470 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039382 Wdr45 ENSMUST00000125991 ENSMUSP00000119766 TRANSLATION protein_coding stop - 5 109.0 0.0 2.55 0.0 0.0 0.0 -4,-6 0.0001 4 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000148624 ENSMUSP00000122086 TRANSLATION protein_coding stop - 5 145.0 0.0 3.18 0.0 0.0 0.0 -4,-6 0.0005 5 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000208996 ENSMUSP00000147040 TRANSLATION protein_coding stop - 5 208.0 0.0 3.4985 0.0 0.0 0.0 -4,-6 0.0005 5 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000208528 ENSMUSP00000146453 TRANSLATION protein_coding stop - 5 130.0 0.0 2.68 0.0 24.1 0.0 -4,-6 0.0014 4 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000207589 ENSMUSP00000147232 TRANSLATION protein_coding stop - 5 293.0 0.0 6.06 0.0 18.8 0.0 -4,-6 0.0043 6 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000207337 ENSMUSP00000146506 TRANSLATION nonsense_mediated_decay - - 5 80.0 0.0 2.15 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000207109 ENSMUSP00000147110 TRANSLATION protein_coding start - 5 287.0 0.0 5.14 0.0 18.8 0.0 -4,-5 0.0019 5 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000043045 ENSMUSP00000041456 TRANSLATION protein_coding - CCDS29970.1 1 360.0 0.0 7.19 30.0 18.8 0.0 -4,-6 1.0 8 12.628 PRINCIPAL:1 ENSMUSG00000039382 Wdr45 ENSMUST00000156000 ENSMUSP00000121634 TRANSLATION protein_coding stop - 5 145.0 0.0 3.18 0.0 0.0 0.0 -4,-6 0.0005 5 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000207675 ENSMUSP00000147163 TRANSLATION protein_coding - - 5 293.0 0.0 6.16 0.0 18.8 0.0 -4,-6 0.0034 7 6.57 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000208719 ENSMUSP00000147254 TRANSLATION protein_coding start - 5 122.0 0.0 2.58 0.0 18.8 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000207386 ENSMUSP00000146707 TRANSLATION protein_coding stop - 5 189.0 0.0 4.03 0.0 18.8 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000116634 ENSMUSP00000112333 TRANSLATION protein_coding - - 5 325.0 0.0 6.19 3.3 42.9 0.0 -4,-6 0.1633 6 10.318 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000207183 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039382 Wdr45 ENSMUST00000208072 ENSMUSP00000146607 TRANSLATION protein_coding stop - 5 136.0 0.0 2.85 0.0 0.0 0.0 -4,-6 0.0005 5 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000209143 ENSMUSP00000147106 TRANSLATION nonsense_mediated_decay - - 5 136.0 0.0 2.15 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000116633 ENSMUSP00000112332 TRANSLATION protein_coding stop - 5 224.0 0.0 4.68 0.0 0.0 0.0 -4,-6 0.0001 5 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000209077 - NO_TRANSLATION retained_intron ENSMUSG00000039382 Wdr45 ENSMUST00000115688 ENSMUSP00000111352 TRANSLATION protein_coding - CCDS72331.1 1 346.0 0.0 6.86 0.0 0.0 0.0 -4,-6 0.075 8 5.34 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000207541 ENSMUSP00000146471 TRANSLATION protein_coding stop - 5 136.0 0.0 3.28 0.0 0.0 0.0 -4,-5 0.0001 5 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000209144 ENSMUSP00000147208 TRANSLATION nonsense_mediated_decay - - 5 56.0 0.0 1.75 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000144148 ENSMUSP00000116483 TRANSLATION protein_coding stop - 5 110.0 0.0 2.55 0.0 0.0 0.0 -4,-6 0.0001 4 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000208553 ENSMUSP00000146660 TRANSLATION nonsense_mediated_decay - - 5 83.0 0.0 2.15 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000131077 ENSMUSP00000117784 TRANSLATION protein_coding stop - 5 146.0 0.0 3.18 0.0 0.0 0.0 -4,-6 0.0005 5 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000208918 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000039382 Wdr45 ENSMUST00000115689 ENSMUSP00000111353 TRANSLATION protein_coding - CCDS29970.1 1 360.0 0.0 7.19 30.0 18.8 0.0 -4,-6 1.0 8 12.628 PRINCIPAL:1 ENSMUSG00000039382 Wdr45 ENSMUST00000154253 ENSMUSP00000138122 TRANSLATION nonsense_mediated_decay - - 5 83.0 0.0 2.15 0.0 0.0 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000039382 Wdr45 ENSMUST00000208618 ENSMUSP00000146354 TRANSLATION protein_coding stop - 5 318.0 0.0 6.19 3.3 24.1 0.0 -4,-6 0.108 6 -2.0 MINOR ENSMUSG00000036572 Upf3b ENSMUST00000076265 ENSMUSP00000075614 TRANSLATION protein_coding - CCDS30068.1 1 472.0 0.0 2.8 8.5 183.7 0.0 -4,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000036572 Upf3b ENSMUST00000130324 ENSMUSP00000121631 TRANSLATION protein_coding start/stop - 3 260.0 0.0 0.0 0.0 71.2 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000036572 Upf3b ENSMUST00000133481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079522 Gm14744 ENSMUST00000114039 ENSMUSP00000109673 TRANSLATION protein_coding - CCDS41037.1 1 173.0 0.0 4.125 0.4 85.4 0.0 3,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095659 Spin2g ENSMUST00000178425 ENSMUSP00000137578 TRANSLATION protein_coding start - - 228.0 0.0 1.0 4.0 209.9 0.0 -4,-2 1.0 - -2.0 MINOR ENSMUSG00000095659 Spin2g ENSMUST00000203586 ENSMUSP00000145332 TRANSLATION protein_coding - - 1 236.0 0.0 1.0 0.1 209.9 0.0 -4,-2 0.636 - 12.0 PRINCIPAL:1 ENSMUSG00000009941 Nxf2 ENSMUST00000113187 ENSMUSP00000108812 TRANSLATION protein_coding - CCDS81173.1 1 671.0 0.0 11.798 0.0 244.5 0.0 -4,-5 0.3531 - 7.868 ALTERNATIVE:2 ENSMUSG00000009941 Nxf2 ENSMUST00000113189 ENSMUSP00000108814 TRANSLATION protein_coding - CCDS41125.1 1 685.0 0.0 11.798 0.0 244.5 0.0 -4,-6 0.5283 - 7.868 ALTERNATIVE:2 ENSMUSG00000009941 Nxf2 ENSMUST00000143059 - NO_TRANSLATION retained_intron ENSMUSG00000009941 Nxf2 ENSMUST00000010085 ENSMUSP00000010085 TRANSLATION protein_coding - CCDS72433.1 1 691.0 0.0 11.864 0.0 238.5 0.0 -4,-6 0.8333 - 8.0 PRINCIPAL:2 ENSMUSG00000041718 Alg13 ENSMUST00000040338 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041718 Alg13 ENSMUST00000154827 ENSMUSP00000131622 TRANSLATION nonsense_mediated_decay - - 1 155.0 16.0 3.75 0.0 91.9 0.0 -3,-5 0.0083 3 -2.0 MINOR ENSMUSG00000041718 Alg13 ENSMUST00000197316 ENSMUSP00000142956 TRANSLATION nonsense_mediated_decay - - 5 51.0 0.0 0.75 0.0 0.0 0.0 -4,-6 0.0003 - -2.0 MINOR ENSMUSG00000041718 Alg13 ENSMUST00000145724 ENSMUSP00000131340 TRANSLATION nonsense_mediated_decay - - 5 81.0 5.0 1.75 0.0 0.0 0.0 -3,-6 0.0 3 -2.0 MINOR ENSMUSG00000041718 Alg13 ENSMUST00000144185 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041718 Alg13 ENSMUST00000198039 ENSMUSP00000143124 TRANSLATION nonsense_mediated_decay - - 5 48.0 0.0 0.85 0.0 0.0 0.0 -4,-5 0.0003 - -2.0 MINOR ENSMUSG00000041718 Alg13 ENSMUST00000199040 - NO_TRANSLATION retained_intron ENSMUSG00000041718 Alg13 ENSMUST00000132416 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041718 Alg13 ENSMUST00000238864 ENSMUSP00000159009 TRANSLATION protein_coding - - - 969.0 0.0 2.22675 0.0 47.2 0.0 -4,-5 0.0354 - 3.972 MINOR ENSMUSG00000041718 Alg13 ENSMUST00000149330 ENSMUSP00000130514 TRANSLATION protein_coding - - 2 61.0 0.0 1.75 5.8 0.0 0.0 -4,-5 0.1073 - 0.96 MINOR ENSMUSG00000041718 Alg13 ENSMUST00000197138 - NO_TRANSLATION retained_intron ENSMUSG00000041718 Alg13 ENSMUST00000149427 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041718 Alg13 ENSMUST00000149811 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041718 Alg13 ENSMUST00000070801 ENSMUSP00000068403 TRANSLATION protein_coding - CCDS30456.1 1 165.0 16.0 4.75 21.0 93.8 0.0 -3,-5 1.0 3 22.0 PRINCIPAL:1 ENSMUSG00000041718 Alg13 ENSMUST00000123710 ENSMUSP00000126052 TRANSLATION protein_coding - - 1 61.0 0.0 1.75 5.8 0.0 0.0 -4,-5 0.1073 - 0.96 MINOR ENSMUSG00000031197 Vbp1 ENSMUST00000114070 ENSMUSP00000109704 TRANSLATION protein_coding - - 1 130.0 0.0 3.15 0.0 57.5 0.0 -4,-5 0.0 5 4.026 MINOR ENSMUSG00000031197 Vbp1 ENSMUST00000033540 ENSMUSP00000033540 TRANSLATION protein_coding - CCDS41032.1 1 196.0 0.0 4.9 27.8 132.1 0.0 -4,-5 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000031197 Vbp1 ENSMUST00000123419 - NO_TRANSLATION retained_intron ENSMUSG00000100626 H2al1a ENSMUST00000188439 ENSMUSP00000140925 TRANSLATION protein_coding - CCDS53003.1 - 105.0 0.0 1.0 0.0 45.6 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094904 H2al1d ENSMUST00000178595 ENSMUSP00000137030 TRANSLATION protein_coding - CCDS57731.1 - 105.0 0.0 1.0 0.0 45.6 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031429 Psmd10 ENSMUST00000112978 ENSMUSP00000108602 TRANSLATION protein_coding - CCDS53207.1 2 151.0 0.0 4.0 11.0 96.6 0.0 -4,-5 0.9668 3 9.696 MINOR ENSMUSG00000031429 Psmd10 ENSMUST00000033805 ENSMUSP00000033805 TRANSLATION protein_coding - CCDS30444.1 1 231.0 0.0 5.75 0.1 126.7 0.0 -4,-5 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000067567 Hdac8 ENSMUST00000154024 - NO_TRANSLATION retained_intron ENSMUSG00000067567 Hdac8 ENSMUST00000087916 ENSMUSP00000085226 TRANSLATION protein_coding - CCDS41084.1 1 377.0 3.0 9.58 12.6 271.2 0.0 -4,-5 1.0 7 18.0 PRINCIPAL:1 ENSMUSG00000067567 Hdac8 ENSMUST00000148481 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067567 Hdac8 ENSMUST00000137785 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000067567 Hdac8 ENSMUST00000154872 ENSMUSP00000138805 TRANSLATION nonsense_mediated_decay - - 5 56.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059626 Rhox3e ENSMUST00000081327 ENSMUSP00000080075 TRANSLATION protein_coding - CCDS53056.1 5 215.0 0.0 1.8 0.0 42.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059626 Rhox3e ENSMUST00000115198 ENSMUSP00000110852 TRANSLATION protein_coding - CCDS53056.1 1 215.0 0.0 1.8 0.0 42.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000059626 Rhox3e ENSMUST00000184210 ENSMUSP00000139092 TRANSLATION protein_coding start - 5 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000059626 Rhox3e ENSMUST00000184270 ENSMUSP00000139192 TRANSLATION protein_coding start - 1 187.0 0.0 1.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079519 Gm14743 ENSMUST00000114026 ENSMUSP00000109660 TRANSLATION protein_coding - CCDS53119.1 1 171.0 0.0 3.75 0.0 72.6 0.0 4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000002006 Pdzd4 ENSMUST00000114438 ENSMUSP00000110081 TRANSLATION protein_coding - CCDS72393.1 1 657.0 0.0 2.75 4.9 49.5 0.0 -4,-5 0.6829 12 12.762 MINOR ENSMUSG00000002006 Pdzd4 ENSMUST00000002080 ENSMUSP00000002080 TRANSLATION protein_coding - CCDS30214.1 1 772.0 0.0 3.15 6.0 49.5 0.0 -4,-5 1.0 13 14.0 PRINCIPAL:1 ENSMUSG00000031372 Trex2 ENSMUST00000033738 ENSMUSP00000033738 TRANSLATION protein_coding - CCDS30201.1 1 236.0 3.0 1.0 8.8 22.7 0.0 -4,-6 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000035299 Mid1 ENSMUST00000143815 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035299 Mid1 ENSMUST00000079443 ENSMUSP00000078412 TRANSLATION protein_coding - - 5 400.0 0.0 4.7 0.0 133.1 0.0 1,-2 0.0015 5 3.786 MINOR ENSMUSG00000035299 Mid1 ENSMUST00000078947 ENSMUSP00000077974 TRANSLATION protein_coding - - 5 642.0 16.0 5.85 0.0 161.7 0.0 -4,-6 0.0073 11 13.806 MINOR ENSMUSG00000035299 Mid1 ENSMUST00000133857 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035299 Mid1 ENSMUST00000146073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035299 Mid1 ENSMUST00000036753 ENSMUSP00000038765 TRANSLATION protein_coding - CCDS41215.1 5 680.0 16.0 6.85 0.0 198.3 0.0 -4,-6 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000035299 Mid1 ENSMUST00000129642 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035299 Mid1 ENSMUST00000163810 ENSMUSP00000128176 TRANSLATION protein_coding - CCDS41215.1 5 680.0 16.0 6.85 0.0 198.3 0.0 -4,-6 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000035299 Mid1 ENSMUST00000149258 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035299 Mid1 ENSMUST00000112107 ENSMUSP00000107735 TRANSLATION protein_coding - - 5 474.0 0.0 5.05 0.0 128.1 0.0 -4,-5 0.0 7 4.188 MINOR ENSMUSG00000035299 Mid1 ENSMUST00000151722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035299 Mid1 ENSMUST00000112105 ENSMUSP00000107733 TRANSLATION protein_coding - CCDS41215.1 5 680.0 16.0 6.85 0.0 198.3 0.0 -4,-6 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000035299 Mid1 ENSMUST00000152163 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035299 Mid1 ENSMUST00000112104 ENSMUSP00000107732 TRANSLATION protein_coding - CCDS41215.1 5 680.0 16.0 6.85 0.0 198.3 0.0 -4,-6 1.0 13 18.0 PRINCIPAL:1 ENSMUSG00000064127 Med14 ENSMUST00000124053 - NO_TRANSLATION retained_intron ENSMUSG00000064127 Med14 ENSMUST00000124070 - NO_TRANSLATION retained_intron ENSMUSG00000064127 Med14 ENSMUST00000115481 ENSMUSP00000111143 TRANSLATION protein_coding - - 1 798.0 0.0 5.53 0.0 0.0 0.0 -4,-7 0.006 18 0.0 MINOR ENSMUSG00000064127 Med14 ENSMUST00000076016 ENSMUSP00000075395 TRANSLATION protein_coding - - 1 700.0 0.0 8.675 0.0 204.7 0.0 -4,-5 0.0264 8 6.0 MINOR ENSMUSG00000064127 Med14 ENSMUST00000096495 ENSMUSP00000094239 TRANSLATION protein_coding - CCDS40874.1 5 1459.0 0.0 12.54 0.1 204.7 0.0 -4,-5 1.0 26 12.0 PRINCIPAL:1 ENSMUSG00000031162 Gata1 ENSMUST00000125418 ENSMUSP00000118052 TRANSLATION protein_coding stop - 3 109.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031162 Gata1 ENSMUST00000033502 ENSMUSP00000033502 TRANSLATION protein_coding - CCDS29981.1 1 413.0 8.0 2.2 7.0 106.1 0.0 -4,-5 1.0 2 20.0 PRINCIPAL:1 ENSMUSG00000031162 Gata1 ENSMUST00000128449 ENSMUSP00000123620 TRANSLATION protein_coding stop - 3 124.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000040363 Bcor ENSMUST00000115513 ENSMUSP00000111175 TRANSLATION protein_coding - CCDS40873.1 1 1759.0 0.0 4.682 6.0 477.7 0.0 -4,-7 1.0 20 10.0 PRINCIPAL:4 ENSMUSG00000040363 Bcor ENSMUST00000123004 ENSMUSP00000120046 TRANSLATION protein_coding stop - 3 95.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 1 -2.0 MINOR ENSMUSG00000040363 Bcor ENSMUST00000209776 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040363 Bcor ENSMUST00000145872 ENSMUSP00000122829 TRANSLATION protein_coding stop - 2 125.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 3 -2.0 MINOR ENSMUSG00000040363 Bcor ENSMUST00000065143 ENSMUSP00000068618 TRANSLATION protein_coding - CCDS30021.1 1 1725.0 0.0 3.682 5.1 477.7 0.0 -4,-7 0.8877 20 7.642 MINOR ENSMUSG00000040363 Bcor ENSMUST00000124033 ENSMUSP00000116258 TRANSLATION protein_coding - CCDS30022.1 1 1707.0 0.0 3.682 5.1 477.7 0.0 -4,-7 0.8753 20 7.642 MINOR ENSMUSG00000040363 Bcor ENSMUST00000115512 ENSMUSP00000111174 TRANSLATION protein_coding - CCDS40872.1 1 1741.0 0.0 4.682 4.1 477.7 0.0 -4,-7 0.8585 20 9.24 ALTERNATIVE:2 ENSMUSG00000040363 Bcor ENSMUST00000043441 ENSMUSP00000048024 TRANSLATION protein_coding - CCDS30022.1 5 1707.0 0.0 3.682 5.1 477.7 0.0 -4,-7 0.8753 20 7.642 MINOR ENSMUSG00000031176 Dynlt3 ENSMUST00000140019 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031176 Dynlt3 ENSMUST00000154091 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031176 Dynlt3 ENSMUST00000033519 ENSMUSP00000033519 TRANSLATION protein_coding - CCDS30011.1 1 116.0 0.0 3.264 36.9 90.2 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031176 Dynlt3 ENSMUST00000125030 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001128 Cfp ENSMUST00000122862 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001128 Cfp ENSMUST00000001156 ENSMUSP00000001156 TRANSLATION protein_coding - CCDS30047.1 1 464.0 3.0 8.0 2.9 251.2 0.0 3,-2 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000031196 F8 ENSMUST00000033539 ENSMUSP00000033539 TRANSLATION protein_coding - CCDS30238.1 1 2319.0 26.0 23.45 0.0 258.4 0.0 4,-1 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000031196 F8 ENSMUST00000114085 ENSMUSP00000109719 TRANSLATION protein_coding - CCDS53114.1 1 2249.0 25.0 22.45 0.0 258.4 0.0 4,-1 0.549 - 15.336 MINOR ENSMUSG00000031196 F8 ENSMUST00000151772 ENSMUSP00000117919 TRANSLATION protein_coding stop - 2 116.0 10.0 3.0 0.0 24.5 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031196 F8 ENSMUST00000147349 ENSMUSP00000114207 TRANSLATION protein_coding stop - 5 196.0 10.0 5.0 0.0 28.1 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000045330 Magec2 ENSMUST00000178085 ENSMUSP00000136235 TRANSLATION protein_coding - CCDS53078.1 2 429.0 0.0 0.5 0.1 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000045330 Magec2 ENSMUST00000051414 ENSMUSP00000056260 TRANSLATION protein_coding - CCDS53078.1 1 429.0 0.0 0.5 0.1 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000118441 Btbd35f26 ENSMUST00000238765 ENSMUSP00000158617 TRANSLATION protein_coding - - - 498.0 0.0 0.8 5.4 41.2 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000095621 Gm15085 ENSMUST00000178169 ENSMUSP00000137569 TRANSLATION protein_coding - CCDS53215.1 1 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:1 ENSMUSG00000036357 Gpr101 ENSMUST00000057645 ENSMUSP00000058183 TRANSLATION protein_coding - CCDS30154.1 1 511.0 0.0 0.2 3.6 155.3 0.0 -4,-7 1.0 1 13.0 PRINCIPAL:1 ENSMUSG00000045802 Hsf3 ENSMUST00000119035 ENSMUSP00000114018 TRANSLATION protein_coding - CCDS53140.1 1 311.0 0.0 1.0 0.0 26.7 0.0 -4,-5 0.025 - 3.39 MINOR ENSMUSG00000045802 Hsf3 ENSMUST00000059003 ENSMUSP00000052508 TRANSLATION protein_coding - CCDS81156.1 1 492.0 0.0 2.8 0.1 105.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000045802 Hsf3 ENSMUST00000164693 ENSMUSP00000132248 TRANSLATION protein_coding - CCDS85791.1 1 368.0 0.0 2.0 0.0 83.2 0.0 -4,-2 0.0167 - 8.922 MINOR ENSMUSG00000045802 Hsf3 ENSMUST00000146965 - NO_TRANSLATION retained_intron ENSMUSG00000045802 Hsf3 ENSMUST00000179832 ENSMUSP00000137314 TRANSLATION protein_coding - CCDS53140.1 1 311.0 0.0 1.0 0.0 26.7 0.0 -4,-5 0.025 - 3.39 MINOR ENSMUSG00000034732 Pabpc5 ENSMUST00000040961 ENSMUSP00000047756 TRANSLATION protein_coding - CCDS30369.1 1 381.0 0.0 1.0 10.3 253.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000034732 Pabpc5 ENSMUST00000113366 ENSMUSP00000108993 TRANSLATION protein_coding - CCDS30369.1 5 381.0 0.0 1.0 10.3 253.3 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000053852 Adgrg4 ENSMUST00000145035 ENSMUSP00000122908 TRANSLATION protein_coding start - 3 205.0 0.0 0.8 0.0 53.8 3.0 -3,-5 0.0 - -2.0 MINOR ENSMUSG00000053852 Adgrg4 ENSMUST00000153784 ENSMUSP00000116634 TRANSLATION protein_coding - - 5 3073.0 0.0 5.91 0.0 203.4 3.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000053852 Adgrg4 ENSMUST00000136396 ENSMUSP00000116655 TRANSLATION protein_coding start - 5 2736.0 0.0 4.93 0.0 199.1 3.0 -4,-6 0.2343 - -2.0 MINOR ENSMUSG00000053852 Adgrg4 ENSMUST00000168724 ENSMUSP00000127627 TRANSLATION protein_coding start/stop - - 177.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000053852 Adgrg4 ENSMUST00000096431 ENSMUSP00000094165 TRANSLATION protein_coding - - 2 216.0 0.0 0.7 0.0 39.6 2.0 -3,-4 0.0 - 0.0 MINOR ENSMUSG00000053852 Adgrg4 ENSMUST00000154818 ENSMUSP00000119486 TRANSLATION protein_coding - - 5 2868.0 0.0 5.23 0.0 203.4 3.0 1,-4 0.3546 - 10.638 MINOR ENSMUSG00000031303 Map3k15 ENSMUST00000033665 ENSMUSP00000033665 TRANSLATION protein_coding - CCDS53236.1 5 1331.0 19.0 12.9 0.4 757.4 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000023279 Bmp15 ENSMUST00000024049 ENSMUSP00000024049 TRANSLATION protein_coding - CCDS29958.1 1 392.0 0.0 0.2 4.9 92.0 0.0 0,-3 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031125 3830403N18Rik ENSMUST00000033458 ENSMUSP00000033458 TRANSLATION protein_coding - CCDS30141.1 1 208.0 0.0 4.5 0.1 129.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062564 Tex28 ENSMUST00000078060 ENSMUSP00000077207 TRANSLATION protein_coding - CCDS53106.1 5 409.0 0.0 0.0 2.5 233.9 2.0 -4,-6 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000062564 Tex28 ENSMUST00000114328 ENSMUSP00000109967 TRANSLATION protein_coding - CCDS53106.1 5 409.0 0.0 0.0 2.5 233.9 2.0 -4,-6 1.0 - 7.0 PRINCIPAL:1 ENSMUSG00000046287 Pnma3 ENSMUST00000060418 ENSMUSP00000054177 TRANSLATION protein_coding - CCDS30192.1 - 466.0 4.0 0.2 0.8 454.0 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031131 Vgll1 ENSMUST00000141936 ENSMUSP00000114308 TRANSLATION protein_coding stop - 2 150.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031131 Vgll1 ENSMUST00000114746 ENSMUSP00000110394 TRANSLATION protein_coding - CCDS30151.1 1 307.0 0.0 1.0 0.0 64.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031131 Vgll1 ENSMUST00000114745 ENSMUSP00000110393 TRANSLATION protein_coding - CCDS30151.1 1 307.0 0.0 1.0 0.0 64.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031131 Vgll1 ENSMUST00000033465 ENSMUSP00000033465 TRANSLATION protein_coding - CCDS30151.1 1 307.0 0.0 1.0 0.0 64.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050089 Akap4 ENSMUST00000057101 ENSMUSP00000050962 TRANSLATION protein_coding - CCDS40838.1 1 849.0 0.0 0.8 0.4 431.9 0.0 -4,-5 1.0 26 8.0 PRINCIPAL:2 ENSMUSG00000050089 Akap4 ENSMUST00000115751 ENSMUSP00000111417 TRANSLATION protein_coding - CCDS40839.1 1 840.0 0.0 0.8 0.4 431.9 0.0 -4,-5 0.5891 26 8.0 ALTERNATIVE:2 ENSMUSG00000050089 Akap4 ENSMUST00000115750 ENSMUSP00000111416 TRANSLATION protein_coding - CCDS40839.1 5 840.0 0.0 0.8 0.4 431.9 0.0 -4,-5 0.5891 26 8.0 ALTERNATIVE:2 ENSMUSG00000094307 Btbd35f28 ENSMUST00000105015 ENSMUSP00000100632 TRANSLATION protein_coding - CCDS52976.1 - 498.0 0.0 0.8 5.4 41.3 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073094 Smim9 ENSMUST00000101433 ENSMUSP00000098976 TRANSLATION protein_coding - CCDS53113.1 1 137.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.9505 - 0.0 PRINCIPAL:1 ENSMUSG00000073094 Smim9 ENSMUST00000165080 ENSMUSP00000132737 TRANSLATION protein_coding - CCDS53113.1 3 137.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.9505 - 0.0 PRINCIPAL:1 ENSMUSG00000073094 Smim9 ENSMUST00000141041 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031320 Rps4x ENSMUST00000033683 ENSMUSP00000033683 TRANSLATION protein_coding - CCDS41083.1 1 263.0 0.0 5.75 36.9 365.6 0.0 -4,-7 1.0 6 16.0 PRINCIPAL:1 ENSMUSG00000031320 Rps4x ENSMUST00000152739 - NO_TRANSLATION retained_intron ENSMUSG00000031320 Rps4x ENSMUST00000155028 - NO_TRANSLATION retained_intron ENSMUSG00000031258 Xkrx ENSMUST00000033611 ENSMUSP00000033611 TRANSLATION protein_coding - CCDS30391.1 1 449.0 0.0 0.0 11.0 227.2 0.0 -4,-6 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000031258 Xkrx ENSMUST00000148722 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000071770 Rhox4e ENSMUST00000184330 - NO_TRANSLATION retained_intron ENSMUSG00000071770 Rhox4e ENSMUST00000089075 ENSMUSP00000086475 TRANSLATION protein_coding - CCDS30078.1 1 205.0 0.0 1.7 0.0 39.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000051228 Nyx ENSMUST00000050434 ENSMUSP00000056313 TRANSLATION protein_coding - CCDS40877.1 1 476.0 0.0 1.0 0.1 162.0 0.0 4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079630 Rhox4f ENSMUST00000115170 ENSMUSP00000110824 TRANSLATION protein_coding - CCDS40938.1 1 205.0 0.0 1.7 0.0 40.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079630 Rhox4f ENSMUST00000183974 - NO_TRANSLATION retained_intron ENSMUSG00000055357 Capza1b ENSMUST00000068874 ENSMUSP00000069798 TRANSLATION protein_coding - - 1 288.0 0.0 1.0 34.0 313.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000055357 Capza1b ENSMUST00000068894 ENSMUSP00000070781 TRANSLATION protein_coding - - 1 288.0 0.0 1.0 34.0 313.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000055357 Capza1b ENSMUST00000112102 ENSMUSP00000107730 TRANSLATION protein_coding - - 1 288.0 0.0 1.0 34.0 313.5 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000095293 Gm10058 ENSMUST00000178152 ENSMUSP00000137449 TRANSLATION protein_coding - CCDS40899.1 5 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095293 Gm10058 ENSMUST00000079797 ENSMUSP00000078727 TRANSLATION protein_coding - CCDS40899.1 1 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000062070 Pgk1 ENSMUST00000081593 ENSMUSP00000080302 TRANSLATION protein_coding - CCDS30339.1 1 417.0 29.0 9.75 36.9 499.5 0.0 -4,-6 1.0 24 22.0 PRINCIPAL:1 ENSMUSG00000062070 Pgk1 ENSMUST00000135949 ENSMUSP00000138706 TRANSLATION nonsense_mediated_decay - - 5 255.0 15.0 6.25 0.0 304.6 0.0 -4,-6 0.0 13 -2.0 MINOR ENSMUSG00000062070 Pgk1 ENSMUST00000133559 - NO_TRANSLATION retained_intron ENSMUSG00000031132 Cd40lg ENSMUST00000033466 ENSMUSP00000033466 TRANSLATION protein_coding - CCDS30152.1 1 260.0 0.0 1.75 11.0 101.7 0.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073295 Nudt11 ENSMUST00000103007 ENSMUSP00000100072 TRANSLATION protein_coding - CCDS29955.1 1 164.0 11.0 1.0 7.6 69.4 0.0 -4,-5 1.0 4 20.0 PRINCIPAL:1 ENSMUSG00000054293 P2ry10b ENSMUST00000125676 ENSMUSP00000122347 TRANSLATION protein_coding stop - 2 130.0 0.0 1.63 0.0 63.2 8.0 -4,-7 0.0046 - -2.0 MINOR ENSMUSG00000054293 P2ry10b ENSMUST00000147521 ENSMUSP00000118187 TRANSLATION protein_coding stop - 2 122.0 0.0 1.3 0.0 57.7 8.0 -4,-7 0.0034 - -2.0 MINOR ENSMUSG00000054293 P2ry10b ENSMUST00000167673 ENSMUSP00000133122 TRANSLATION protein_coding - CCDS41099.1 2 352.0 0.0 1.964 0.0 119.0 11.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054293 P2ry10b ENSMUST00000180182 ENSMUSP00000136348 TRANSLATION protein_coding - CCDS41099.1 2 352.0 0.0 1.964 0.0 119.0 11.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054293 P2ry10b ENSMUST00000067249 ENSMUSP00000065588 TRANSLATION protein_coding - CCDS41099.1 1 352.0 0.0 1.964 0.0 119.0 11.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054293 P2ry10b ENSMUST00000137107 ENSMUSP00000122348 TRANSLATION protein_coding stop - 3 37.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000058932 Gm2174 ENSMUST00000079663 ENSMUSP00000131256 TRANSLATION protein_coding start - - 133.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5673 - -2.0 PRINCIPAL:1 ENSMUSG00000067360 Pramel3a ENSMUST00000118821 ENSMUSP00000112761 TRANSLATION protein_coding - CCDS30403.1 1 462.0 0.0 1.26 0.0 0.0 0.0 -4,-6 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047686 Rtl3 ENSMUST00000062010 ENSMUSP00000060157 TRANSLATION protein_coding - CCDS30344.1 1 553.0 4.0 0.0 0.0 45.4 0.0 -4,-5 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000054626 Xlr ENSMUST00000067763 ENSMUSP00000068044 TRANSLATION protein_coding - CCDS30139.1 1 208.0 0.0 4.5 0.1 129.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000054626 Xlr ENSMUST00000067782 ENSMUSP00000066162 TRANSLATION protein_coding - CCDS81127.1 1 187.0 0.0 3.6875 0.0 98.8 0.0 -4,-5 0.0086 - 8.532 MINOR ENSMUSG00000054626 Xlr ENSMUST00000114810 ENSMUSP00000110458 TRANSLATION protein_coding - CCDS30139.1 1 208.0 0.0 4.5 0.1 129.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031174 Rpgr ENSMUST00000143532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031174 Rpgr ENSMUST00000115532 ENSMUSP00000111194 TRANSLATION protein_coding - CCDS53002.1 1 972.0 0.0 8.1 0.0 224.9 0.0 -4,0 0.6316 8 8.0 ALTERNATIVE:2 ENSMUSG00000031174 Rpgr ENSMUST00000073392 ENSMUSP00000073106 TRANSLATION protein_coding - CCDS30014.1 1 746.0 0.0 8.1 0.3 224.9 0.0 -4,0 0.4883 9 8.0 ALTERNATIVE:2 ENSMUSG00000031174 Rpgr ENSMUST00000124744 - NO_TRANSLATION retained_intron ENSMUSG00000031174 Rpgr ENSMUST00000155734 - NO_TRANSLATION retained_intron ENSMUSG00000031174 Rpgr ENSMUST00000115534 ENSMUSP00000111196 TRANSLATION protein_coding - CCDS53000.1 1 651.0 0.0 7.1 0.0 219.1 0.0 -4,-6 0.1784 6 5.802 MINOR ENSMUSG00000031174 Rpgr ENSMUST00000115533 ENSMUSP00000111195 TRANSLATION protein_coding - - 1 681.0 0.0 8.1 0.0 224.9 0.0 -4,0 0.8148 7 8.0 ALTERNATIVE:2 ENSMUSG00000031174 Rpgr ENSMUST00000044598 ENSMUSP00000037358 TRANSLATION protein_coding - CCDS53001.1 1 1039.0 0.0 8.1 0.0 224.9 0.0 -4,0 0.7727 10 8.0 PRINCIPAL:3 ENSMUSG00000031174 Rpgr ENSMUST00000072393 ENSMUSP00000072229 TRANSLATION protein_coding - - 2 680.0 0.0 8.1 0.0 224.9 0.0 -4,0 0.7417 6 8.0 ALTERNATIVE:2 ENSMUSG00000039201 Tbc1d25 ENSMUST00000039892 ENSMUSP00000047838 TRANSLATION protein_coding - CCDS29988.1 1 742.0 0.0 0.52 0.0 135.3 0.0 -4,-1 0.3857 4 12.0 MINOR ENSMUSG00000039201 Tbc1d25 ENSMUST00000172020 ENSMUSP00000131652 TRANSLATION protein_coding - CCDS52989.1 1 723.0 0.0 0.52 0.0 135.3 0.0 -4,-5 0.3943 4 12.0 MINOR ENSMUSG00000039201 Tbc1d25 ENSMUST00000239441 ENSMUSP00000159357 TRANSLATION protein_coding - - - 688.0 0.0 0.52 4.5 135.3 0.0 -4,-5 1.0 4 14.0 PRINCIPAL:1 ENSMUSG00000039201 Tbc1d25 ENSMUST00000133093 - NO_TRANSLATION retained_intron ENSMUSG00000039201 Tbc1d25 ENSMUST00000143984 ENSMUSP00000138768 TRANSLATION protein_coding - - 5 560.0 0.0 0.52 2.2 135.3 0.0 -4,-5 0.5794 3 12.686 MINOR ENSMUSG00000079450 Cldn34c1 ENSMUST00000153946 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079450 Cldn34c1 ENSMUST00000113348 ENSMUSP00000108975 TRANSLATION protein_coding - CCDS53178.1 1 234.0 0.0 0.5 0.0 0.0 3.0 -4,0 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000079450 Cldn34c1 ENSMUST00000113343 ENSMUSP00000108970 TRANSLATION protein_coding - CCDS81167.1 1 212.0 0.0 0.5 0.1 0.0 3.0 -2,0 0.4326 - 6.0 ALTERNATIVE:2 ENSMUSG00000079450 Cldn34c1 ENSMUST00000149445 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079450 Cldn34c1 ENSMUST00000139733 ENSMUSP00000159558 TRANSLATION protein_coding - CCDS81167.1 2 212.0 0.0 0.5 0.1 0.0 3.0 -2,0 0.4326 - 6.0 ALTERNATIVE:2 ENSMUSG00000067684 Obp1a ENSMUST00000088201 ENSMUSP00000085531 TRANSLATION protein_coding - CCDS30251.1 1 163.0 0.0 3.75 0.0 85.8 0.0 4,-1 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000067860 Zic3 ENSMUST00000088629 ENSMUSP00000086001 TRANSLATION protein_coding - - 1 456.0 20.0 2.2 7.8 84.4 0.0 -4,-5 0.7599 - 19.578 MINOR ENSMUSG00000067860 Zic3 ENSMUST00000088631 ENSMUSP00000086003 TRANSLATION protein_coding - - 5 246.0 21.0 2.2 0.0 88.5 0.0 -4,-2 0.0571 - 18.0 MINOR ENSMUSG00000067860 Zic3 ENSMUST00000088627 ENSMUSP00000085999 TRANSLATION protein_coding - CCDS30155.1 1 466.0 21.0 2.2 9.1 88.5 0.0 -4,-5 1.0 - 21.0 PRINCIPAL:1 ENSMUSG00000067860 Zic3 ENSMUST00000137687 ENSMUSP00000116383 TRANSLATION protein_coding stop - 3 89.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025043 Dusp21 ENSMUST00000026018 ENSMUSP00000026018 TRANSLATION protein_coding - CCDS30036.1 - 189.0 8.0 1.0 9.2 113.7 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000000787 Ddx3x ENSMUST00000149639 - NO_TRANSLATION retained_intron ENSMUSG00000000787 Ddx3x ENSMUST00000123096 - NO_TRANSLATION retained_intron ENSMUSG00000000787 Ddx3x ENSMUST00000000804 ENSMUSP00000000804 TRANSLATION protein_coding - CCDS30027.1 1 662.0 17.0 10.35 10.3 279.8 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000000787 Ddx3x ENSMUST00000153611 - NO_TRANSLATION retained_intron ENSMUSG00000000787 Ddx3x ENSMUST00000153851 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096072 Mageb6b2 ENSMUST00000101396 ENSMUSP00000098944 TRANSLATION protein_coding - - - 344.0 0.0 0.5 0.4 51.2 0.0 -4,-5 0.7895 - 12.0 PRINCIPAL:1 ENSMUSG00000036782 Klhl13 ENSMUST00000144360 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036782 Klhl13 ENSMUST00000115317 ENSMUSP00000110972 TRANSLATION protein_coding - - 5 654.0 0.0 5.6 25.8 345.2 0.0 -4,-2 0.8659 2 12.0 ALTERNATIVE:1 ENSMUSG00000036782 Klhl13 ENSMUST00000153345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036782 Klhl13 ENSMUST00000115319 ENSMUSP00000110974 TRANSLATION protein_coding - CCDS72348.1 1 648.0 0.0 5.6 21.4 345.2 0.0 -4,-5 1.0 2 11.292 PRINCIPAL:4 ENSMUSG00000036782 Klhl13 ENSMUST00000115313 ENSMUSP00000110968 TRANSLATION protein_coding - - 1 604.0 0.0 5.6 1.0 345.2 0.0 -4,-1 0.2535 2 8.0 MINOR ENSMUSG00000036782 Klhl13 ENSMUST00000035973 ENSMUSP00000041190 TRANSLATION protein_coding - CCDS40891.1 5 638.0 0.0 5.6 9.2 345.2 0.0 -4,-5 0.6165 3 9.324 MINOR ENSMUSG00000036782 Klhl13 ENSMUST00000115316 ENSMUSP00000110971 TRANSLATION protein_coding - CCDS81105.1 5 640.0 0.0 5.6 1.6 345.2 0.0 -4,-7 0.5166 2 8.096 MINOR ENSMUSG00000095082 Gm15091 ENSMUST00000112740 ENSMUSP00000108360 TRANSLATION protein_coding - CCDS53217.1 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:1 ENSMUSG00000079639 Rhox4a ENSMUST00000173298 - NO_TRANSLATION retained_intron ENSMUSG00000079639 Rhox4a ENSMUST00000115194 ENSMUSP00000110848 TRANSLATION protein_coding - CCDS40930.1 1 205.0 0.0 1.7 0.0 39.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079584 Tm9sf5 ENSMUST00000114725 ENSMUSP00000110373 TRANSLATION protein_coding - CCDS53076.1 2 671.0 0.0 0.0 0.3 516.4 0.0 0,-4 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000031138 F9 ENSMUST00000033477 ENSMUSP00000033477 TRANSLATION protein_coding - CCDS30158.1 1 471.0 11.0 5.33 1.1 366.3 0.0 0,-3 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000078317 F8a ENSMUST00000105111 ENSMUSP00000100743 TRANSLATION protein_coding - CCDS41011.1 - 381.0 0.0 0.33 0.0 0.0 0.0 -3,-5 1.0 9 6.0 PRINCIPAL:1 ENSMUSG00000080933 Rhox3g ENSMUST00000119965 ENSMUSP00000138947 TRANSLATION protein_coding - CCDS72366.1 5 160.0 0.0 1.4 0.1 43.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095180 Rhox5 ENSMUST00000239524 - NO_TRANSLATION retained_intron ENSMUSG00000095180 Rhox5 ENSMUST00000184866 ENSMUSP00000139179 TRANSLATION protein_coding - CCDS57752.1 1 210.0 0.0 0.6 0.1 0.0 0.0 -4,-5 0.3228 - 6.0 ALTERNATIVE:2 ENSMUSG00000095180 Rhox5 ENSMUST00000239523 ENSMUSP00000159403 TRANSLATION protein_coding - CCDS57752.1 - 210.0 0.0 0.6 0.1 0.0 0.0 -4,-5 0.3228 - 6.0 ALTERNATIVE:2 ENSMUSG00000095180 Rhox5 ENSMUST00000179626 ENSMUSP00000137526 TRANSLATION protein_coding - - 1 262.0 0.0 0.6 0.0 0.0 0.0 -4,-7 0.6651 - 6.0 PRINCIPAL:2 ENSMUSG00000031207 Msn ENSMUST00000117399 ENSMUSP00000113071 TRANSLATION protein_coding - CCDS53139.1 1 577.0 0.0 9.7 34.3 474.5 0.0 -4,-5 1.0 28 16.0 PRINCIPAL:1 ENSMUSG00000031207 Msn ENSMUST00000135027 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031207 Msn ENSMUST00000149985 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031353 Rbbp7 ENSMUST00000033720 ENSMUSP00000033720 TRANSLATION protein_coding - CCDS30509.1 1 425.0 0.0 10.52 33.9 194.4 0.0 -4,-6 1.0 8 16.0 PRINCIPAL:1 ENSMUSG00000031353 Rbbp7 ENSMUST00000143681 ENSMUSP00000115354 TRANSLATION protein_coding start - 1 76.0 0.0 2.0 0.0 24.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031353 Rbbp7 ENSMUST00000112327 ENSMUSP00000107946 TRANSLATION protein_coding - - 5 416.0 0.0 10.19 18.1 194.4 0.0 -4,-6 0.7322 6 13.42 MINOR ENSMUSG00000031353 Rbbp7 ENSMUST00000112326 ENSMUSP00000107945 TRANSLATION protein_coding - - 1 386.0 0.0 9.52 0.0 170.4 0.0 -4,-6 0.0266 7 8.562 MINOR ENSMUSG00000031353 Rbbp7 ENSMUST00000138791 ENSMUSP00000114734 TRANSLATION protein_coding start/stop - 3 235.0 0.0 4.66 0.0 105.3 0.0 -4,-7 0.0 5 -2.0 MINOR ENSMUSG00000035967 Ints6l ENSMUST00000134138 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035967 Ints6l ENSMUST00000132428 ENSMUSP00000138630 TRANSLATION nonsense_mediated_decay - CCDS30145.1 2 861.0 5.0 8.855 8.6 183.2 0.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000035967 Ints6l ENSMUST00000186445 ENSMUSP00000139507 TRANSLATION protein_coding - CCDS30145.1 2 861.0 5.0 8.855 8.6 183.2 0.0 -4,-7 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000035967 Ints6l ENSMUST00000142624 ENSMUSP00000119095 TRANSLATION protein_coding start - 2 78.0 2.0 2.3 0.0 95.8 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000035967 Ints6l ENSMUST00000143142 ENSMUSP00000118865 TRANSLATION protein_coding start - 5 638.0 2.0 4.98 0.0 106.3 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000035967 Ints6l ENSMUST00000101553 ENSMUSP00000099089 TRANSLATION protein_coding - - 2 489.0 3.0 6.955 0.0 76.9 0.0 -4,-7 0.0 5 5.202 MINOR ENSMUSG00000035967 Ints6l ENSMUST00000039374 ENSMUSP00000035379 TRANSLATION protein_coding - CCDS30145.1 1 861.0 5.0 8.855 8.6 183.2 0.0 -4,-7 1.0 7 20.0 PRINCIPAL:1 ENSMUSG00000067873 Htatsf1 ENSMUST00000088652 ENSMUSP00000086027 TRANSLATION protein_coding - CCDS40983.1 1 757.0 0.0 5.5 0.0 56.5 0.0 -4,-5 1.0 13 12.0 PRINCIPAL:1 ENSMUSG00000067873 Htatsf1 ENSMUST00000134785 - NO_TRANSLATION retained_intron ENSMUSG00000067873 Htatsf1 ENSMUST00000114751 ENSMUSP00000110399 TRANSLATION protein_coding - - 1 195.0 0.0 1.5 0.0 0.0 0.0 -4,-5 0.0 7 0.0 MINOR ENSMUSG00000031119 Gpc4 ENSMUST00000033450 ENSMUSP00000033450 TRANSLATION protein_coding - CCDS30124.1 1 557.0 0.0 5.35 10.7 782.8 0.0 3,-2 1.0 12 15.0 PRINCIPAL:1 ENSMUSG00000000003 Pbsn ENSMUST00000114041 ENSMUSP00000109675 TRANSLATION protein_coding - - 2 137.0 0.0 3.2675 0.0 26.2 0.0 2,-2 0.0043 4 6.156 MINOR ENSMUSG00000000003 Pbsn ENSMUST00000000003 ENSMUSP00000000003 TRANSLATION protein_coding - CCDS30249.1 1 174.0 0.0 4.2675 0.4 72.9 0.0 2,-2 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000121571 ENSMUSG00000121571 ENSMUST00000249242 ENSMUSP00000159622 TRANSLATION protein_coding - - - 29.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - 0.0 PRINCIPAL:1 ENSMUSG00000109493 Gm45208 ENSMUST00000207461 ENSMUSP00000146594 TRANSLATION nonsense_mediated_decay,RT start - 3 126.0 0.0 2.3 0.0 16.9 0.0 -4,-6 0.0 - -2.0 ALTERNATIVE:2 ENSMUSG00000109493 Gm45208 ENSMUST00000208156 ENSMUSP00000147061 TRANSLATION protein_coding,RT - - 5 292.0 0.0 5.80375 0.0 62.0 0.0 -4,-6 0.7296 - -2.0 PRINCIPAL:5 ENSMUSG00000031299 Pdha1 ENSMUST00000156531 - NO_TRANSLATION retained_intron ENSMUSG00000031299 Pdha1 ENSMUST00000033662 ENSMUSP00000033662 TRANSLATION protein_coding - CCDS41195.1 1 390.0 23.0 9.25 31.9 416.4 0.0 -3,1 1.0 22 22.0 PRINCIPAL:1 ENSMUSG00000031299 Pdha1 ENSMUST00000126440 - NO_TRANSLATION retained_intron ENSMUSG00000031299 Pdha1 ENSMUST00000127535 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090122 Kcne1l ENSMUST00000134825 ENSMUSP00000127773 TRANSLATION protein_coding - CCDS30447.1 - 143.0 0.0 0.2 7.9 22.5 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000062162 Mageb1 ENSMUST00000072269 ENSMUSP00000072119 TRANSLATION protein_coding - CCDS30267.1 - 380.0 0.0 0.6 0.0 0.0 0.0 -4,0 0.418 - 6.0 ALTERNATIVE:2 ENSMUSG00000062162 Mageb1 ENSMUST00000099471 ENSMUSP00000097070 TRANSLATION protein_coding - - - 330.0 0.0 0.6 0.0 0.0 0.0 -4,-2 0.6943 - 6.0 PRINCIPAL:2 ENSMUSG00000006373 Pgrmc1 ENSMUST00000073339 ENSMUSP00000073061 TRANSLATION protein_coding - CCDS30060.1 1 195.0 0.0 2.6 13.3 54.3 0.0 -4,-6 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000073027 Dmrtc1b ENSMUST00000113609 ENSMUSP00000109239 TRANSLATION protein_coding - CCDS81160.1 1 267.0 0.0 0.0 0.0 158.1 0.0 -4,-7 0.2657 - 0.0 ALTERNATIVE:2 ENSMUSG00000073027 Dmrtc1b ENSMUST00000101324 ENSMUSP00000098880 TRANSLATION protein_coding - CCDS30325.1 1 241.0 0.0 0.0 0.1 158.1 0.0 -4,-6 0.2389 - 0.0 ALTERNATIVE:2 ENSMUSG00000073027 Dmrtc1b ENSMUST00000118842 ENSMUSP00000113730 TRANSLATION protein_coding - - 1 202.0 0.0 0.0 0.0 158.1 0.0 -4,-6 0.7172 - 0.0 PRINCIPAL:2 ENSMUSG00000048994 H2al3 ENSMUST00000057113 ENSMUSP00000052025 TRANSLATION protein_coding - CCDS52999.1 - 128.0 0.0 0.5 0.0 0.0 0.0 -4,-5 1.0 1 6.0 PRINCIPAL:1 ENSMUSG00000034755 Pcdh11x ENSMUST00000195088 ENSMUSP00000142050 TRANSLATION nonsense_mediated_decay - - 1 1128.0 65.0 1.48 0.0 651.8 1.0 0,-3 0.3552 3 -2.0 MINOR ENSMUSG00000034755 Pcdh11x ENSMUST00000113364 ENSMUSP00000108991 TRANSLATION protein_coding - - 5 1338.0 65.0 1.48 0.0 651.8 1.0 0,-3 0.3977 4 18.0 MINOR ENSMUSG00000034755 Pcdh11x ENSMUST00000192977 - NO_TRANSLATION retained_intron ENSMUSG00000034755 Pcdh11x ENSMUST00000113358 ENSMUSP00000108985 TRANSLATION protein_coding - CCDS72426.1 5 1320.0 65.0 1.48 1.2 651.8 1.0 0,-3 0.6595 4 18.124 MINOR ENSMUSG00000034755 Pcdh11x ENSMUST00000193899 ENSMUSP00000141581 TRANSLATION protein_coding - - 5 1026.0 65.0 1.48 4.2 651.8 1.0 0,-3 1.0 3 20.0 PRINCIPAL:1 ENSMUSG00000034755 Pcdh11x ENSMUST00000155223 ENSMUSP00000138407 TRANSLATION nonsense_mediated_decay start - 1 304.0 0.0 0.0 0.0 209.8 0.0 -4,-7 0.0014 1 -2.0 MINOR ENSMUSG00000034755 Pcdh11x ENSMUST00000192677 ENSMUSP00000141522 TRANSLATION protein_coding - - 5 1338.0 65.0 1.48 0.0 651.8 1.0 0,-3 0.3977 4 18.0 MINOR ENSMUSG00000034755 Pcdh11x ENSMUST00000191653 ENSMUSP00000141600 TRANSLATION protein_coding start - 1 496.0 0.0 0.0 0.0 209.8 0.0 -4,-7 0.0024 2 -2.0 MINOR ENSMUSG00000035651 4930480E11Rik ENSMUST00000035626 ENSMUSP00000037594 TRANSLATION protein_coding - CCDS53120.1 - 394.0 0.0 0.0 0.1 0.0 0.0 -4,-6 0.8652 - 0.0 PRINCIPAL:1 ENSMUSG00000031144 Syp ENSMUST00000134355 - NO_TRANSLATION retained_intron ENSMUSG00000031144 Syp ENSMUST00000128890 ENSMUSP00000118544 TRANSLATION protein_coding start/stop - 3 165.0 0.0 2.45 0.0 70.1 2.0 -4,-6 0.0023 2 -2.0 MINOR ENSMUSG00000031144 Syp ENSMUST00000137515 - NO_TRANSLATION retained_intron ENSMUSG00000031144 Syp ENSMUST00000069520 ENSMUSP00000069429 TRANSLATION protein_coding - CCDS29967.2 1 314.0 0.0 3.95 7.8 150.4 4.0 -4,-7 1.0 5 14.0 PRINCIPAL:1 ENSMUSG00000031144 Syp ENSMUST00000149795 - NO_TRANSLATION retained_intron ENSMUSG00000031144 Syp ENSMUST00000150572 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025862 Stag2 ENSMUST00000141414 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025862 Stag2 ENSMUST00000115072 ENSMUSP00000110724 TRANSLATION protein_coding - CCDS40952.1 5 1231.0 0.0 22.41 9.6 127.4 0.0 -4,-5 0.8709 21 13.9 MINOR ENSMUSG00000025862 Stag2 ENSMUST00000128799 ENSMUSP00000120592 TRANSLATION protein_coding stop - 1 145.0 0.0 2.1 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000025862 Stag2 ENSMUST00000127618 ENSMUSP00000119635 TRANSLATION protein_coding stop - 1 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025862 Stag2 ENSMUST00000136323 - NO_TRANSLATION retained_intron ENSMUSG00000025862 Stag2 ENSMUST00000115073 ENSMUSP00000110725 TRANSLATION protein_coding - CCDS72371.1 5 1268.0 0.0 22.41 19.1 127.4 0.0 -4,-5 1.0 20 16.0 PRINCIPAL:1 ENSMUSG00000025862 Stag2 ENSMUST00000123245 ENSMUSP00000118567 TRANSLATION protein_coding stop - 5 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000025862 Stag2 ENSMUST00000069619 ENSMUSP00000063250 TRANSLATION protein_coding - CCDS40952.1 5 1231.0 0.0 22.41 9.6 127.4 0.0 -4,-5 0.8709 21 13.9 MINOR ENSMUSG00000044359 P2ry4 ENSMUST00000053373 ENSMUSP00000055869 TRANSLATION protein_coding - CCDS30303.1 1 361.0 0.0 0.6 4.3 135.6 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000071722 Spin4 ENSMUST00000096367 ENSMUSP00000094095 TRANSLATION protein_coding - CCDS30282.1 - 249.0 0.0 1.0 9.9 228.6 0.0 -4,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000096457 Gm10147 ENSMUST00000075388 ENSMUSP00000074848 TRANSLATION protein_coding - CCDS53030.1 1 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096457 Gm10147 ENSMUST00000178966 ENSMUSP00000136201 TRANSLATION protein_coding - CCDS53030.1 5 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031425 Plp1 ENSMUST00000033800 ENSMUSP00000033800 TRANSLATION protein_coding - CCDS30424.1 1 277.0 0.0 0.0 24.2 340.5 3.0 -3,-6 0.9525 6 4.0 PRINCIPAL:3 ENSMUSG00000031425 Plp1 ENSMUST00000125644 - NO_TRANSLATION retained_intron ENSMUSG00000031425 Plp1 ENSMUST00000113085 ENSMUSP00000108708 TRANSLATION protein_coding - CCDS72436.1 1 242.0 0.0 0.0 15.1 349.1 4.0 -3,-6 1.0 5 4.432 ALTERNATIVE:1 ENSMUSG00000031425 Plp1 ENSMUST00000144880 - NO_TRANSLATION retained_intron ENSMUSG00000040522 Tlr8 ENSMUST00000049023 ENSMUSP00000036762 TRANSLATION protein_coding - CCDS41209.1 1 1032.0 0.0 1.8 0.4 186.8 1.0 0,-3 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000040522 Tlr8 ENSMUST00000112170 ENSMUSP00000107793 TRANSLATION protein_coding - CCDS41209.1 2 1032.0 0.0 1.8 0.4 186.8 1.0 0,-3 1.0 5 12.0 PRINCIPAL:1 ENSMUSG00000040522 Tlr8 ENSMUST00000138311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040522 Tlr8 ENSMUST00000148370 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040522 Tlr8 ENSMUST00000133722 ENSMUSP00000122089 TRANSLATION protein_coding stop - 2 100.0 0.0 1.0 0.0 33.6 0.0 2,-2 0.0011 - -2.0 MINOR ENSMUSG00000049775 Tmsb4x ENSMUST00000112175 ENSMUSP00000107797 TRANSLATION protein_coding - - 2 50.0 0.0 1.33 0.0 81.1 0.0 -4,-5 0.0308 3 12.0 MINOR ENSMUSG00000049775 Tmsb4x ENSMUST00000112176 ENSMUSP00000107798 TRANSLATION protein_coding - - 1 50.0 0.0 1.33 0.0 81.1 0.0 -4,-5 0.0308 3 12.0 MINOR ENSMUSG00000049775 Tmsb4x ENSMUST00000112172 ENSMUSP00000107795 TRANSLATION protein_coding - CCDS30529.1 1 44.0 0.0 1.33 33.9 81.1 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000035522 Tsga8 ENSMUST00000049420 ENSMUSP00000043015 TRANSLATION protein_coding - CCDS53124.1 1 238.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8936 - 0.0 PRINCIPAL:1 ENSMUSG00000001986 Gria3 ENSMUST00000165288 ENSMUSP00000131523 TRANSLATION protein_coding - CCDS72370.1 1 888.0 10.0 14.1 21.3 553.4 4.0 3,-3 0.9866 16 17.838 ALTERNATIVE:1 ENSMUSG00000001986 Gria3 ENSMUST00000126843 - NO_TRANSLATION retained_intron ENSMUSG00000001986 Gria3 ENSMUST00000139965 ENSMUSP00000116381 TRANSLATION nonsense_mediated_decay - - 5 818.0 10.0 13.1 12.2 529.9 3.0 3,-3 0.5506 13 -2.0 MINOR ENSMUSG00000001986 Gria3 ENSMUST00000124169 ENSMUSP00000117766 TRANSLATION protein_coding stop - 3 83.0 0.0 2.0 0.0 44.1 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000001986 Gria3 ENSMUST00000148212 - NO_TRANSLATION retained_intron ENSMUSG00000001986 Gria3 ENSMUST00000128197 - NO_TRANSLATION retained_intron ENSMUSG00000001986 Gria3 ENSMUST00000156721 - NO_TRANSLATION retained_intron ENSMUSG00000001986 Gria3 ENSMUST00000076349 ENSMUSP00000075687 TRANSLATION protein_coding - CCDS30097.1 1 888.0 10.0 14.18 21.3 556.0 4.0 3,-3 1.0 16 18.0 PRINCIPAL:4 ENSMUSG00000001986 Gria3 ENSMUST00000115103 ENSMUSP00000110755 TRANSLATION protein_coding - CCDS72370.1 5 888.0 10.0 14.1 21.3 553.4 4.0 3,-3 0.9866 16 17.838 ALTERNATIVE:1 ENSMUSG00000095655 H2al1f ENSMUST00000179004 ENSMUSP00000136695 TRANSLATION protein_coding - CCDS57732.1 - 105.0 0.0 1.0 0.0 45.6 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031189 Aff2 ENSMUST00000151662 - NO_TRANSLATION retained_intron ENSMUSG00000031189 Aff2 ENSMUST00000033532 ENSMUSP00000033532 TRANSLATION protein_coding - CCDS30173.1 1 1272.0 0.0 4.199 0.0 874.1 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031189 Aff2 ENSMUST00000139977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031189 Aff2 ENSMUST00000143097 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000096645 Spin2e ENSMUST00000238411 ENSMUSP00000158816 TRANSLATION protein_coding stop - - 117.0 0.0 1.0 0.0 85.1 0.0 -4,-7 0.0 - -2.0 MINOR ENSMUSG00000096645 Spin2e ENSMUST00000238728 ENSMUSP00000158691 TRANSLATION protein_coding - - - 236.0 0.0 2.0 0.1 218.3 0.0 -4,-7 0.7542 - 12.0 PRINCIPAL:1 ENSMUSG00000121608 ENSMUSG00000121608 ENSMUST00000249672 ENSMUSP00000159850 TRANSLATION protein_coding start/stop - - 89.0 0.0 2.0 0.0 86.8 0.0 -,- 0.7404 - -2.0 PRINCIPAL:1 ENSMUSG00000046942 Mageb16 ENSMUST00000114016 ENSMUSP00000109649 TRANSLATION protein_coding - CCDS53122.1 1 363.0 0.0 1.0 0.1 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000046942 Mageb16 ENSMUST00000052283 ENSMUSP00000087292 TRANSLATION protein_coding - CCDS53122.1 1 363.0 0.0 1.0 0.1 0.0 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000047844 Bex4 ENSMUST00000116527 ENSMUSP00000112226 TRANSLATION protein_coding - CCDS30414.1 1 118.0 0.0 0.0 5.9 60.5 0.0 -4,-5 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000061082 Plac1 ENSMUST00000074861 ENSMUSP00000074404 TRANSLATION protein_coding - CCDS30128.1 1 173.0 0.0 1.0 0.0 0.0 0.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061082 Plac1 ENSMUST00000174390 ENSMUSP00000133862 TRANSLATION protein_coding - CCDS30128.1 3 173.0 0.0 1.0 0.0 0.0 0.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000061082 Plac1 ENSMUST00000114843 ENSMUSP00000110492 TRANSLATION protein_coding - CCDS30128.1 1 173.0 0.0 1.0 0.0 0.0 0.0 1,-3 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000050424 Pnma5 ENSMUST00000152209 ENSMUSP00000114161 TRANSLATION protein_coding start - 1 295.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0017 - -2.0 MINOR ENSMUSG00000050424 Pnma5 ENSMUST00000051569 ENSMUSP00000063061 TRANSLATION protein_coding - CCDS41004.1 - 618.0 0.0 0.5 0.3 399.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000050424 Pnma5 ENSMUST00000114540 ENSMUSP00000110187 TRANSLATION protein_coding - CCDS41004.1 1 618.0 0.0 0.5 0.3 399.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025529 Zfp711 ENSMUST00000071814 ENSMUSP00000071717 TRANSLATION protein_coding - - 5 760.0 46.0 0.9 6.9 524.4 0.0 -4,-6 0.6336 - 18.476 MINOR ENSMUSG00000025529 Zfp711 ENSMUST00000151972 - NO_TRANSLATION retained_intron ENSMUSG00000025529 Zfp711 ENSMUST00000113409 ENSMUSP00000109036 TRANSLATION protein_coding - CCDS41106.1 5 805.0 46.0 0.9 6.0 549.8 0.0 -4,-6 1.0 - 19.694 PRINCIPAL:1 ENSMUSG00000025529 Zfp711 ENSMUST00000122805 ENSMUSP00000118117 TRANSLATION protein_coding start/stop - 3 231.0 0.0 0.0 0.0 226.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000078320 Tex13c1 ENSMUST00000105113 ENSMUSP00000100745 TRANSLATION protein_coding - CCDS72373.1 3 604.0 3.0 0.0 0.0 219.3 0.0 -4,-5 1.0 - 9.0 PRINCIPAL:1 ENSMUSG00000025257 Ribc1 ENSMUST00000026288 ENSMUSP00000026288 TRANSLATION protein_coding - CCDS30472.1 1 379.0 0.0 2.6 8.4 440.9 0.0 -4,-5 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000025257 Ribc1 ENSMUST00000133517 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031290 Lrch2 ENSMUST00000152838 ENSMUSP00000121128 TRANSLATION protein_coding start - 5 452.0 0.0 1.746 0.0 37.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031290 Lrch2 ENSMUST00000137665 ENSMUSP00000117458 TRANSLATION protein_coding start - 5 464.0 0.0 2.274 0.0 37.6 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031290 Lrch2 ENSMUST00000112819 ENSMUSP00000108438 TRANSLATION protein_coding - CCDS41160.1 5 773.0 0.0 5.514 0.0 110.9 0.0 -4,-5 1.0 7 12.0 PRINCIPAL:1 ENSMUSG00000031290 Lrch2 ENSMUST00000134265 - NO_TRANSLATION retained_intron ENSMUSG00000031290 Lrch2 ENSMUST00000136789 ENSMUSP00000123633 TRANSLATION protein_coding start - 5 784.0 0.0 5.514 0.0 110.9 0.0 -4,-6 0.1829 7 -2.0 MINOR ENSMUSG00000031290 Lrch2 ENSMUST00000151730 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079583 Gm7073 ENSMUST00000190178 ENSMUSP00000139835 TRANSLATION protein_coding - CCDS40989.2 1 335.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.8969 1 0.0 PRINCIPAL:1 ENSMUSG00000079583 Gm7073 ENSMUST00000114687 ENSMUSP00000110335 TRANSLATION protein_coding - CCDS40989.2 5 335.0 0.0 0.0 0.0 0.0 0.0 -3,-5 0.8969 1 0.0 PRINCIPAL:1 ENSMUSG00000031402 Mpp1 ENSMUST00000132501 ENSMUSP00000118693 TRANSLATION protein_coding stop - 5 205.0 6.0 3.26 0.0 98.7 0.0 -4,-5 0.0 10 -2.0 MINOR ENSMUSG00000031402 Mpp1 ENSMUST00000153318 ENSMUSP00000116897 TRANSLATION protein_coding stop - 5 156.0 0.0 2.39 0.0 41.7 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000031402 Mpp1 ENSMUST00000114091 ENSMUSP00000109725 TRANSLATION protein_coding - - 2 452.0 6.0 7.64 0.0 288.1 0.0 -4,-5 0.02 20 13.614 MINOR ENSMUSG00000031402 Mpp1 ENSMUST00000114092 ENSMUSP00000109726 TRANSLATION protein_coding - - 5 446.0 6.0 8.04 1.0 316.8 0.0 -4,-5 0.0527 18 16.134 MINOR ENSMUSG00000031402 Mpp1 ENSMUST00000127023 ENSMUSP00000117003 TRANSLATION nonsense_mediated_decay - - 3 45.0 0.0 0.32 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031402 Mpp1 ENSMUST00000155742 ENSMUSP00000116401 TRANSLATION protein_coding stop - 5 130.0 0.0 2.15 0.0 66.2 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031402 Mpp1 ENSMUST00000132935 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031402 Mpp1 ENSMUST00000033775 ENSMUSP00000033775 TRANSLATION protein_coding - CCDS30236.1 1 466.0 6.0 8.64 17.4 327.9 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000031402 Mpp1 ENSMUST00000135285 - NO_TRANSLATION retained_intron ENSMUSG00000031402 Mpp1 ENSMUST00000156975 - NO_TRANSLATION retained_intron ENSMUSG00000096426 Btbd35f24 ENSMUST00000178080 ENSMUSP00000136909 TRANSLATION protein_coding - - - 498.0 0.0 0.8 5.4 40.0 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031371 Haus7 ENSMUST00000033737 ENSMUSP00000033737 TRANSLATION protein_coding - CCDS30202.1 1 364.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8896 7 0.0 PRINCIPAL:2 ENSMUSG00000031371 Haus7 ENSMUST00000131140 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031371 Haus7 ENSMUST00000077243 ENSMUSP00000076479 TRANSLATION protein_coding - CCDS30203.1 1 248.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.2092 4 0.0 ALTERNATIVE:2 ENSMUSG00000031148 Gpkow ENSMUST00000154562 ENSMUSP00000118248 TRANSLATION protein_coding start/stop - 3 190.0 0.0 0.9125 0.0 26.9 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000031148 Gpkow ENSMUST00000129845 - NO_TRANSLATION retained_intron ENSMUSG00000031148 Gpkow ENSMUST00000049896 ENSMUSP00000076178 TRANSLATION protein_coding - CCDS29969.2 1 488.0 0.0 1.2425 0.4 100.1 0.0 -4,-2 1.0 8 12.0 PRINCIPAL:1 ENSMUSG00000118430 Cldn34c3 ENSMUST00000238631 ENSMUSP00000159559 TRANSLATION protein_coding - - - 212.0 0.0 0.5 0.1 0.0 0.0 -2,0 0.6949 - 6.0 PRINCIPAL:1 ENSMUSG00000095445 H2al1i ENSMUST00000164729 ENSMUSP00000125841 TRANSLATION protein_coding - CCDS57735.1 - 105.0 0.0 1.0 0.0 45.6 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031168 Ebp ENSMUST00000140011 - NO_TRANSLATION retained_intron ENSMUSG00000031168 Ebp ENSMUST00000149495 - NO_TRANSLATION retained_intron ENSMUSG00000031168 Ebp ENSMUST00000033509 ENSMUSP00000033509 TRANSLATION protein_coding - CCDS29989.1 1 230.0 0.0 3.83 10.0 187.1 5.0 -4,-7 1.0 2 15.0 PRINCIPAL:1 ENSMUSG00000031168 Ebp ENSMUST00000143223 ENSMUSP00000116845 TRANSLATION protein_coding stop - 2 121.0 0.0 1.83 0.0 72.3 2.0 -4,-7 0.0015 1 -2.0 MINOR ENSMUSG00000068218 Ssxb9 ENSMUST00000115584 ENSMUSP00000111247 TRANSLATION protein_coding - - 5 170.0 0.0 2.0 0.0 82.6 0.0 -4,-5 0.739 - 12.0 PRINCIPAL:1 ENSMUSG00000079593 4933416I08Rik ENSMUST00000123034 ENSMUSP00000121594 TRANSLATION protein_coding - - 3 242.0 0.0 1.0 0.0 30.2 0.0 -4,-7 0.071 - 6.0 ALTERNATIVE:2 ENSMUSG00000079593 4933416I08Rik ENSMUST00000129769 ENSMUSP00000123472 TRANSLATION protein_coding - - 3 280.0 0.0 1.0 0.1 30.2 0.0 -4,-6 0.7688 - 6.0 PRINCIPAL:2 ENSMUSG00000054453 Sytl5 ENSMUST00000086165 ENSMUSP00000083339 TRANSLATION protein_coding - CCDS72342.1 1 731.0 12.0 5.6 7.5 202.0 0.0 -4,-5 0.9316 12 16.787 ALTERNATIVE:1 ENSMUSG00000054453 Sytl5 ENSMUST00000067529 ENSMUSP00000064826 TRANSLATION protein_coding - CCDS40860.1 1 753.0 12.0 5.6 8.0 202.0 0.0 -4,-5 1.0 13 17.0 PRINCIPAL:3 ENSMUSG00000031179 Magea9 ENSMUST00000033522 ENSMUSP00000033522 TRANSLATION protein_coding - CCDS30166.1 1 303.0 0.0 1.0 0.4 28.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031179 Magea9 ENSMUST00000151996 ENSMUSP00000122540 TRANSLATION protein_coding stop - 3 22.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000079637 Rhox2c ENSMUST00000115190 ENSMUSP00000110844 TRANSLATION protein_coding - CCDS53053.1 5 191.0 0.0 1.5 0.3 47.3 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079637 Rhox2c ENSMUST00000173574 ENSMUSP00000134224 TRANSLATION protein_coding start - 3 113.0 0.0 1.066 0.0 33.1 0.0 -4,-5 0.0004 - -2.0 MINOR ENSMUSG00000079637 Rhox2c ENSMUST00000183655 ENSMUSP00000138977 TRANSLATION protein_coding start - 5 91.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079637 Rhox2c ENSMUST00000184688 ENSMUSP00000139080 TRANSLATION protein_coding - - 5 183.0 0.0 1.198 0.0 34.0 0.0 -4,-5 0.021 - 9.108 MINOR ENSMUSG00000025265 Fgd1 ENSMUST00000026296 ENSMUSP00000026296 TRANSLATION protein_coding - CCDS30467.1 1 960.0 5.0 6.76 6.4 297.5 0.0 -4,-6 1.0 8 19.0 PRINCIPAL:1 ENSMUSG00000025265 Fgd1 ENSMUST00000125620 - NO_TRANSLATION retained_intron ENSMUSG00000025265 Fgd1 ENSMUST00000112685 ENSMUSP00000108305 TRANSLATION protein_coding - - 5 791.0 5.0 6.76 0.8 297.5 0.0 -4,-7 0.2617 6 17.0 MINOR ENSMUSG00000025265 Fgd1 ENSMUST00000124882 - NO_TRANSLATION retained_intron ENSMUSG00000072969 Armcx5 ENSMUST00000128847 - NO_TRANSLATION retained_intron ENSMUSG00000072969 Armcx5 ENSMUST00000096321 ENSMUSP00000094045 TRANSLATION protein_coding - CCDS30408.1 1 606.0 0.0 0.5 0.0 369.7 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000050394 Armcx6 ENSMUST00000052431 ENSMUSP00000057277 TRANSLATION protein_coding - CCDS30399.1 1 301.0 0.0 0.2 9.9 89.3 1.0 -1,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000050394 Armcx6 ENSMUST00000113194 ENSMUSP00000108819 TRANSLATION protein_coding - CCDS30399.1 2 301.0 0.0 0.2 9.9 89.3 1.0 -1,-6 1.0 1 15.0 PRINCIPAL:1 ENSMUSG00000050394 Armcx6 ENSMUST00000126075 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000050394 Armcx6 ENSMUST00000150465 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033965 Slc16a2 ENSMUST00000148684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033965 Slc16a2 ENSMUST00000042664 ENSMUSP00000037629 TRANSLATION protein_coding - CCDS30330.1 1 545.0 0.0 2.9 4.3 79.5 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000033965 Slc16a2 ENSMUST00000171837 - NO_TRANSLATION retained_intron ENSMUSG00000036502 Tmem255a ENSMUST00000089054 ENSMUSP00000086455 TRANSLATION protein_coding - CCDS72367.1 1 328.0 0.0 0.0 1.1 495.1 4.0 -4,-2 0.0731 1 4.125 MINOR ENSMUSG00000036502 Tmem255a ENSMUST00000139358 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036502 Tmem255a ENSMUST00000066498 ENSMUSP00000064511 TRANSLATION protein_coding - CCDS30089.1 1 351.0 0.0 0.0 9.9 526.9 4.0 -4,-2 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000036502 Tmem255a ENSMUST00000155848 - NO_TRANSLATION retained_intron ENSMUSG00000036502 Tmem255a ENSMUST00000089056 ENSMUSP00000086457 TRANSLATION protein_coding - CCDS81122.1 1 331.0 0.0 0.0 0.0 460.9 4.0 -4,-2 0.0519 1 2.04 MINOR ENSMUSG00000035045 Zc3h12b ENSMUST00000127461 ENSMUSP00000121099 TRANSLATION protein_coding start - 2 53.0 0.0 1.0 0.0 28.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000035045 Zc3h12b ENSMUST00000082183 ENSMUSP00000080820 TRANSLATION protein_coding - CCDS41069.1 5 835.0 4.0 5.3 9.9 214.8 0.0 -4,-5 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000035045 Zc3h12b ENSMUST00000150123 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035045 Zc3h12b ENSMUST00000145362 ENSMUSP00000138252 TRANSLATION nonsense_mediated_decay start - 5 114.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000073131 Vma21 ENSMUST00000114577 ENSMUSP00000110224 TRANSLATION protein_coding - CCDS72388.1 3 120.0 1.0 0.0 5.6 83.1 6.0 -4,-2 0.2727 2 6.66 MINOR ENSMUSG00000073131 Vma21 ENSMUST00000138979 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073131 Vma21 ENSMUST00000114575 ENSMUSP00000110222 TRANSLATION protein_coding - CCDS72389.1 2 134.0 1.0 0.0 0.0 83.1 6.0 -4,-2 0.1374 2 6.0 MINOR ENSMUSG00000073131 Vma21 ENSMUST00000154054 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073131 Vma21 ENSMUST00000114576 ENSMUSP00000110223 TRANSLATION protein_coding - CCDS41000.1 1 101.0 1.0 0.0 28.9 83.1 6.0 -4,-7 1.0 3 10.0 PRINCIPAL:1 ENSMUSG00000031432 Prps1 ENSMUST00000033809 ENSMUSP00000033809 TRANSLATION protein_coding - CCDS30439.1 1 318.0 12.0 6.8 36.9 288.8 0.0 -4,-7 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000031432 Prps1 ENSMUST00000155235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000047045 Tmem164 ENSMUST00000112889 ENSMUSP00000108510 TRANSLATION protein_coding - CCDS57778.1 1 148.0 0.0 3.08 8.3 207.1 6.0 4,-1 0.361 - 6.71 MINOR ENSMUSG00000047045 Tmem164 ENSMUST00000087333 ENSMUSP00000084591 TRANSLATION protein_coding - CCDS30451.1 1 296.0 0.0 3.792 14.7 395.2 6.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000047045 Tmem164 ENSMUST00000101198 ENSMUSP00000098759 TRANSLATION protein_coding - CCDS57778.1 3 148.0 0.0 3.08 8.3 207.1 6.0 4,-1 0.361 - 6.71 MINOR ENSMUSG00000047045 Tmem164 ENSMUST00000151914 ENSMUSP00000116443 TRANSLATION protein_coding start - 3 121.0 0.0 2.15 0.0 110.3 6.0 -2,-5 0.0037 - -2.0 MINOR ENSMUSG00000047045 Tmem164 ENSMUST00000124211 - NO_TRANSLATION retained_intron ENSMUSG00000047045 Tmem164 ENSMUST00000112888 ENSMUSP00000108509 TRANSLATION protein_coding - - 3 82.0 0.0 1.1 0.0 95.8 0.0 -2,-5 0.0 - 0.618 MINOR ENSMUSG00000047045 Tmem164 ENSMUST00000112891 ENSMUSP00000108512 TRANSLATION protein_coding - - 5 133.0 0.0 1.5 0.0 125.7 4.0 -4,-6 0.0037 - 1.416 MINOR ENSMUSG00000047045 Tmem164 ENSMUST00000133634 ENSMUSP00000138503 TRANSLATION nonsense_mediated_decay - CCDS30451.1 1 296.0 0.0 3.792 14.7 395.2 6.0 -4,-7 1.0 - -2.0 MINOR ENSMUSG00000047045 Tmem164 ENSMUST00000112896 ENSMUSP00000108517 TRANSLATION protein_coding - CCDS30451.1 1 296.0 0.0 3.792 14.7 395.2 6.0 -4,-7 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000035847 Ids ENSMUST00000101509 ENSMUSP00000099046 TRANSLATION protein_coding - CCDS40996.1 1 552.0 5.0 7.83 0.7 185.2 0.0 0,-3 1.0 5 17.0 PRINCIPAL:1 ENSMUSG00000035847 Ids ENSMUST00000130519 ENSMUSP00000118732 TRANSLATION protein_coding start/stop - 5 236.0 2.0 3.83 0.0 74.7 0.0 -4,-5 0.0002 - -2.0 MINOR ENSMUSG00000052676 Zmat1 ENSMUST00000141849 - NO_TRANSLATION retained_intron ENSMUSG00000052676 Zmat1 ENSMUST00000151252 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052676 Zmat1 ENSMUST00000113185 ENSMUSP00000108810 TRANSLATION protein_coding - - 5 613.0 6.0 0.9 0.0 16.1 0.0 -4,-5 0.0654 3 15.57 MINOR ENSMUSG00000052676 Zmat1 ENSMUST00000064659 ENSMUSP00000066815 TRANSLATION protein_coding - CCDS41126.1 1 647.0 7.0 1.22 0.4 16.1 0.0 -4,-5 1.0 3 18.0 PRINCIPAL:1 ENSMUSG00000051209 Gpr119 ENSMUST00000053970 ENSMUSP00000060591 TRANSLATION protein_coding - CCDS30113.1 1 335.0 0.0 0.32 12.4 115.2 0.0 -1,-5 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031385 Plxnb3 ENSMUST00000155096 - NO_TRANSLATION retained_intron ENSMUSG00000031385 Plxnb3 ENSMUST00000002079 ENSMUSP00000002079 TRANSLATION protein_coding - CCDS41013.1 5 1902.0 0.0 18.54 0.1 1032.7 0.0 -2,-4 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000031385 Plxnb3 ENSMUST00000149478 - NO_TRANSLATION retained_intron ENSMUSG00000031385 Plxnb3 ENSMUST00000146812 - NO_TRANSLATION retained_intron ENSMUSG00000031385 Plxnb3 ENSMUST00000147127 - NO_TRANSLATION retained_intron ENSMUSG00000000037 Scml2 ENSMUST00000238361 ENSMUSP00000158809 TRANSLATION protein_coding start - - 130.0 0.0 1.4 0.0 64.3 0.0 -4,-2 0.0 - -2.0 MINOR ENSMUSG00000000037 Scml2 ENSMUST00000124775 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000037 Scml2 ENSMUST00000238603 ENSMUSP00000158772 TRANSLATION protein_coding stop - - 367.0 0.0 3.5 0.0 169.2 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000000037 Scml2 ENSMUST00000077375 ENSMUSP00000076593 TRANSLATION protein_coding - - 1 969.0 0.0 9.65 0.0 319.5 0.0 -4,-5 0.8588 2 8.0 PRINCIPAL:2 ENSMUSG00000000037 Scml2 ENSMUST00000019101 ENSMUSP00000019101 TRANSLATION protein_coding - CCDS72460.1 1 905.0 0.0 9.25 0.0 319.5 0.0 -4,-5 0.3421 2 7.202 ALTERNATIVE:2 ENSMUSG00000000037 Scml2 ENSMUST00000101113 ENSMUSP00000098672 TRANSLATION protein_coding - - 5 825.0 0.0 7.0 0.0 319.5 0.0 -4,-5 0.0573 2 2.702 MINOR ENSMUSG00000000037 Scml2 ENSMUST00000074802 ENSMUSP00000074356 TRANSLATION protein_coding - CCDS81193.1 5 845.0 0.0 8.5 0.0 319.5 0.0 -4,-5 0.2171 2 5.702 MINOR ENSMUSG00000000037 Scml2 ENSMUST00000087090 ENSMUSP00000084325 TRANSLATION protein_coding - - 5 827.0 0.0 7.375 0.0 319.5 0.0 -4,-5 0.0646 2 3.452 MINOR ENSMUSG00000000037 Scml2 ENSMUST00000112345 ENSMUSP00000107964 TRANSLATION protein_coding - - 5 901.0 0.0 9.25 0.0 319.5 0.0 -4,-5 0.1052 2 7.202 ALTERNATIVE:2 ENSMUSG00000072049 Vmn2r121 ENSMUST00000233504 ENSMUSP00000156535 TRANSLATION nonsense_mediated_decay - - - 98.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000072049 Vmn2r121 ENSMUST00000233359 ENSMUSP00000156789 TRANSLATION nonsense_mediated_decay - - - 89.0 0.0 0.0 0.0 0.0 0.0 4,-1 0.0016 - -2.0 MINOR ENSMUSG00000072049 Vmn2r121 ENSMUST00000094491 ENSMUSP00000092067 TRANSLATION protein_coding - CCDS53179.1 5 847.0 4.0 2.48 0.1 369.9 0.0 4,-1 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000050504 Or5bh3 ENSMUST00000213556 ENSMUSP00000149286 TRANSLATION protein_coding - CCDS30119.1 5 309.0 0.0 0.8 5.3 172.8 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050504 Or5bh3 ENSMUST00000213463 ENSMUSP00000149426 TRANSLATION protein_coding - CCDS30119.1 5 309.0 0.0 0.8 5.3 172.8 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000050504 Or5bh3 ENSMUST00000057071 ENSMUSP00000050768 TRANSLATION protein_coding - CCDS30119.1 - 309.0 0.0 0.8 5.3 172.8 6.0 -4,-6 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031173 Otc ENSMUST00000115528 ENSMUSP00000111190 TRANSLATION protein_coding - - 1 351.0 0.0 7.3 2.2 311.8 0.0 -4,0 0.1765 13 11.212 MINOR ENSMUSG00000031173 Otc ENSMUST00000049910 ENSMUSP00000056152 TRANSLATION protein_coding - CCDS30015.1 1 354.0 0.0 7.5 21.8 322.1 0.0 -4,0 1.0 14 16.0 PRINCIPAL:1 ENSMUSG00000043518 Rai2 ENSMUST00000061514 ENSMUSP00000051618 TRANSLATION protein_coding - CCDS30507.1 1 529.0 0.0 0.0 10.1 39.8 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000043518 Rai2 ENSMUST00000112338 ENSMUSP00000107957 TRANSLATION protein_coding - CCDS30507.1 1 529.0 0.0 0.0 10.1 39.8 0.0 -4,-5 1.0 1 9.0 PRINCIPAL:1 ENSMUSG00000073008 Gpr174 ENSMUST00000156709 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073008 Gpr174 ENSMUST00000138031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073008 Gpr174 ENSMUST00000120971 ENSMUSP00000112974 TRANSLATION protein_coding - CCDS30348.1 1 335.0 0.0 0.6 9.9 133.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073008 Gpr174 ENSMUST00000117310 ENSMUSP00000112808 TRANSLATION protein_coding - CCDS30348.1 1 335.0 0.0 0.6 9.9 133.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073008 Gpr174 ENSMUST00000101294 ENSMUSP00000098852 TRANSLATION protein_coding - CCDS30348.1 1 335.0 0.0 0.6 9.9 133.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073008 Gpr174 ENSMUST00000118820 ENSMUSP00000113032 TRANSLATION protein_coding - CCDS30348.1 1 335.0 0.0 0.6 9.9 133.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000073008 Gpr174 ENSMUST00000178838 ENSMUSP00000137372 TRANSLATION protein_coding - CCDS30348.1 2 335.0 0.0 0.6 9.9 133.9 6.0 -4,-7 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031289 Il13ra2 ENSMUST00000033646 ENSMUSP00000033646 TRANSLATION protein_coding - CCDS30460.1 1 383.0 0.0 5.05 2.3 104.4 1.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000031289 Il13ra2 ENSMUST00000112827 ENSMUSP00000108446 TRANSLATION protein_coding - CCDS30460.1 1 383.0 0.0 5.05 2.3 104.4 1.0 1,-3 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000057402 Cldn34b2 ENSMUST00000076671 ENSMUSP00000075967 TRANSLATION protein_coding - CCDS53232.1 1 209.0 0.0 0.6 0.4 45.2 0.0 0,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000000223 Drp2 ENSMUST00000113228 ENSMUSP00000108854 TRANSLATION protein_coding - CCDS30394.1 5 957.0 4.0 7.675 10.7 365.8 0.0 -4,-7 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000000223 Drp2 ENSMUST00000113224 ENSMUSP00000108850 TRANSLATION protein_coding - - 5 981.0 4.0 7.675 0.0 365.8 0.0 -2,1 0.223 10 16.0 MINOR ENSMUSG00000000223 Drp2 ENSMUST00000113226 ENSMUSP00000108852 TRANSLATION protein_coding - CCDS30394.1 5 957.0 4.0 7.675 10.7 365.8 0.0 -4,-7 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000000223 Drp2 ENSMUST00000000228 - NO_TRANSLATION retained_intron ENSMUSG00000000223 Drp2 ENSMUST00000153424 ENSMUSP00000115246 TRANSLATION protein_coding - CCDS30394.1 1 957.0 4.0 7.675 10.7 365.8 0.0 -4,-7 1.0 10 19.0 PRINCIPAL:1 ENSMUSG00000000223 Drp2 ENSMUST00000142146 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031309 Rps6ka3 ENSMUST00000142668 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031309 Rps6ka3 ENSMUST00000149939 - NO_TRANSLATION retained_intron ENSMUSG00000031309 Rps6ka3 ENSMUST00000156648 ENSMUSP00000115271 TRANSLATION protein_coding start/stop - 3 129.0 8.0 2.33 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031309 Rps6ka3 ENSMUST00000112492 ENSMUSP00000108111 TRANSLATION protein_coding stop - 5 135.0 13.0 3.58 0.0 61.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031309 Rps6ka3 ENSMUST00000112491 ENSMUSP00000108110 TRANSLATION protein_coding stop - 3 211.0 20.0 5.83 0.0 175.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031309 Rps6ka3 ENSMUST00000112493 ENSMUSP00000108112 TRANSLATION protein_coding - CCDS85822.1 5 712.0 38.0 18.23 10.6 516.7 0.0 -4,-5 0.8614 14 20.0 MINOR ENSMUSG00000031309 Rps6ka3 ENSMUST00000126686 ENSMUSP00000118007 TRANSLATION protein_coding stop - 2 34.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031309 Rps6ka3 ENSMUST00000148570 ENSMUSP00000123059 TRANSLATION protein_coding start/stop - 2 172.0 13.0 4.73 0.0 99.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031309 Rps6ka3 ENSMUST00000033671 ENSMUSP00000033671 TRANSLATION protein_coding - CCDS30502.1 1 740.0 38.0 18.38 17.7 516.7 0.0 -4,-5 1.0 14 22.0 PRINCIPAL:1 ENSMUSG00000081443 Fam236d ENSMUST00000122154 ENSMUSP00000147867 TRANSLATION protein_coding - - 5 72.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.5648 - 0.0 PRINCIPAL:1 ENSMUSG00000023257 Cypt1 ENSMUST00000024026 ENSMUSP00000024026 TRANSLATION protein_coding - CCDS40880.1 1 173.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.8751 - 0.0 PRINCIPAL:2 ENSMUSG00000023257 Cypt1 ENSMUST00000115422 ENSMUSP00000111082 TRANSLATION protein_coding - CCDS81101.1 1 168.0 0.0 0.0 0.0 0.0 0.0 -2,-5 0.3611 - 0.0 ALTERNATIVE:2 ENSMUSG00000044148 1810030O07Rik ENSMUST00000060108 ENSMUSP00000059095 TRANSLATION protein_coding - CCDS30024.1 1 320.0 0.0 0.0 0.0 338.3 0.0 -4,-5 1.0 6 6.0 PRINCIPAL:1 ENSMUSG00000048040 Arxes2 ENSMUST00000058119 ENSMUSP00000051250 TRANSLATION protein_coding - CCDS30411.1 - 180.0 0.0 1.0 33.8 189.8 0.0 -1,-4 1.0 4 16.0 PRINCIPAL:1 ENSMUSG00000004317 Clcn5 ENSMUST00000154382 - NO_TRANSLATION retained_intron ENSMUSG00000004317 Clcn5 ENSMUST00000004428 ENSMUSP00000004428 TRANSLATION protein_coding - CCDS29963.1 1 746.0 0.0 4.9785 9.9 422.4 13.0 -4,-6 1.0 5 11.0 PRINCIPAL:4 ENSMUSG00000004317 Clcn5 ENSMUST00000115746 ENSMUSP00000111412 TRANSLATION protein_coding - CCDS57727.1 5 816.0 0.0 4.9785 8.8 422.4 13.0 -4,-7 0.8421 5 10.628 ALTERNATIVE:1 ENSMUSG00000004317 Clcn5 ENSMUST00000128319 ENSMUSP00000122555 TRANSLATION protein_coding stop - 5 223.0 0.0 0.2 0.0 0.0 3.0 -4,-7 0.0017 - -2.0 MINOR ENSMUSG00000004317 Clcn5 ENSMUST00000132126 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025658 Cnksr2 ENSMUST00000026750 ENSMUSP00000026750 TRANSLATION protein_coding - CCDS30501.1 1 1032.0 8.0 5.55 17.0 503.8 0.0 -4,-6 1.0 27 22.0 PRINCIPAL:1 ENSMUSG00000025658 Cnksr2 ENSMUST00000112513 ENSMUSP00000108132 TRANSLATION protein_coding - - 5 896.0 8.0 5.55 5.5 503.8 0.0 -4,-6 0.3499 24 19.124 MINOR ENSMUSG00000025658 Cnksr2 ENSMUST00000139664 - NO_TRANSLATION retained_intron ENSMUSG00000031210 Gpr165 ENSMUST00000033554 ENSMUSP00000033554 TRANSLATION protein_coding - CCDS30291.1 1 455.0 0.0 2.6 0.1 136.5 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000031210 Gpr165 ENSMUST00000139205 - NO_TRANSLATION retained_intron ENSMUSG00000031210 Gpr165 ENSMUST00000137479 - NO_TRANSLATION retained_intron ENSMUSG00000031210 Gpr165 ENSMUST00000130276 - NO_TRANSLATION retained_intron ENSMUSG00000079476 Fam236e ENSMUST00000113602 ENSMUSP00000109232 TRANSLATION protein_coding - - 1 88.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.5669 - 0.0 PRINCIPAL:1 ENSMUSG00000100133 Tgif2lx1 ENSMUST00000073857 ENSMUSP00000073522 TRANSLATION protein_coding - CCDS30368.1 - 231.0 0.0 0.0 0.0 46.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000009731 Kcnd1 ENSMUST00000125440 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009731 Kcnd1 ENSMUST00000009875 ENSMUSP00000009875 TRANSLATION protein_coding - CCDS29974.1 1 651.0 0.0 1.65 11.0 427.4 0.0 0,-5 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000051257 Trap1a ENSMUST00000054534 ENSMUSP00000059448 TRANSLATION protein_coding - CCDS30433.1 1 224.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8894 - 0.0 PRINCIPAL:1 ENSMUSG00000031232 Magt1 ENSMUST00000139421 ENSMUSP00000115579 TRANSLATION protein_coding - - 1 306.0 0.0 6.5 0.0 315.6 4.0 2,-2 0.0135 6 4.002 MINOR ENSMUSG00000031232 Magt1 ENSMUST00000033583 ENSMUSP00000033583 TRANSLATION protein_coding - CCDS53168.1 1 368.0 0.0 7.5 5.3 359.1 5.0 -4,-2 0.8395 7 9.246 ALTERNATIVE:1 ENSMUSG00000031232 Magt1 ENSMUST00000113566 ENSMUSP00000109196 TRANSLATION protein_coding - - 1 335.0 0.0 7.5 7.9 359.1 5.0 2,-2 1.0 7 10.0 PRINCIPAL:4 ENSMUSG00000031232 Magt1 ENSMUST00000238718 ENSMUSP00000158823 TRANSLATION protein_coding - CCDS53168.1 - 368.0 0.0 7.5 5.3 359.1 5.0 -4,-2 0.8395 7 9.246 ALTERNATIVE:1 ENSMUSG00000031232 Magt1 ENSMUST00000151689 ENSMUSP00000120994 TRANSLATION protein_coding - - 1 335.0 0.0 7.5 7.9 359.1 5.0 2,-2 1.0 7 10.0 PRINCIPAL:4 ENSMUSG00000031382 Asb11 ENSMUST00000036858 ENSMUSP00000044637 TRANSLATION protein_coding - CCDS85827.1 1 323.0 0.0 5.85 25.0 138.6 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000031382 Asb11 ENSMUST00000134085 - NO_TRANSLATION retained_intron ENSMUSG00000031382 Asb11 ENSMUST00000033755 ENSMUSP00000033755 TRANSLATION protein_coding - CCDS30523.1 1 294.0 0.0 5.75 4.2 138.6 0.0 -4,-5 0.2622 1 12.334 MINOR ENSMUSG00000079579 Gm6760 ENSMUST00000114682 ENSMUSP00000110330 TRANSLATION protein_coding - CCDS53080.1 1 87.0 0.0 1.0 0.0 23.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000052854 Nrk ENSMUST00000155201 - NO_TRANSLATION retained_intron ENSMUSG00000052854 Nrk ENSMUST00000064937 ENSMUSP00000063397 TRANSLATION protein_coding - CCDS41143.1 1 1455.0 18.0 11.248 0.0 321.9 0.0 -4,-5 1.0 3 12.0 PRINCIPAL:4 ENSMUSG00000052854 Nrk ENSMUST00000142132 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000052854 Nrk ENSMUST00000131829 ENSMUSP00000115962 TRANSLATION nonsense_mediated_decay - - 5 1326.0 18.0 9.45 0.0 279.1 0.0 -4,-5 0.0331 3 -2.0 MINOR ENSMUSG00000052854 Nrk ENSMUST00000113052 ENSMUSP00000108675 TRANSLATION protein_coding - - 5 1455.0 18.0 11.248 0.0 321.9 0.0 -4,-5 0.7819 3 12.0 ALTERNATIVE:2 ENSMUSG00000058328 Xlr5a ENSMUST00000114520 ENSMUSP00000110166 TRANSLATION protein_coding - CCDS30194.1 3 236.0 0.0 4.75 0.4 125.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058328 Xlr5a ENSMUST00000179600 ENSMUSP00000137006 TRANSLATION protein_coding - CCDS30194.1 5 236.0 0.0 4.75 0.4 125.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058328 Xlr5a ENSMUST00000078574 ENSMUSP00000077650 TRANSLATION protein_coding - CCDS30194.1 1 236.0 0.0 4.75 0.4 125.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000058328 Xlr5a ENSMUST00000114521 ENSMUSP00000110167 TRANSLATION protein_coding - - 5 203.0 0.0 3.75 0.3 61.8 0.0 -4,-5 0.0 - 6.21 MINOR ENSMUSG00000062184 Hs6st2 ENSMUST00000140145 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062184 Hs6st2 ENSMUST00000088172 ENSMUSP00000085497 TRANSLATION protein_coding - CCDS40970.1 1 652.0 0.0 0.36 5.1 252.4 1.0 -4,-2 0.534 4 9.045 MINOR ENSMUSG00000062184 Hs6st2 ENSMUST00000114871 ENSMUSP00000110521 TRANSLATION protein_coding - CCDS72379.1 1 612.0 0.0 1.44 8.1 255.5 1.0 -4,-2 1.0 4 15.0 PRINCIPAL:1 ENSMUSG00000062184 Hs6st2 ENSMUST00000142983 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000062184 Hs6st2 ENSMUST00000142738 - NO_TRANSLATION retained_intron ENSMUSG00000031283 Chrdl1 ENSMUST00000112878 ENSMUSP00000108499 TRANSLATION protein_coding - CCDS53208.1 5 447.0 0.0 1.701 0.0 109.3 0.0 0,-3 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000031283 Chrdl1 ENSMUST00000074660 ENSMUSP00000074230 TRANSLATION protein_coding - CCDS30453.1 1 333.0 0.0 1.701 0.0 109.3 0.0 0,-3 0.4056 4 8.0 ALTERNATIVE:2 ENSMUSG00000031283 Chrdl1 ENSMUST00000063029 ENSMUSP00000056193 TRANSLATION protein_coding - CCDS53208.1 1 447.0 0.0 1.701 0.0 109.3 0.0 0,-3 1.0 4 8.0 PRINCIPAL:2 ENSMUSG00000031283 Chrdl1 ENSMUST00000207415 ENSMUSP00000146974 TRANSLATION protein_coding stop - 3 159.0 0.0 1.27 0.0 37.7 0.0 0,-3 0.0 1 -2.0 MINOR ENSMUSG00000019558 Slc6a8 ENSMUST00000114467 ENSMUSP00000110111 TRANSLATION protein_coding - CCDS53098.1 1 635.0 0.0 13.01 6.1 804.8 23.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000019558 Slc6a8 ENSMUST00000146796 - NO_TRANSLATION retained_intron ENSMUSG00000019558 Slc6a8 ENSMUST00000171398 ENSMUSP00000128079 TRANSLATION protein_coding stop - 3 107.0 0.0 2.13 0.0 129.8 2.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000019558 Slc6a8 ENSMUST00000168764 - NO_TRANSLATION retained_intron ENSMUSG00000019558 Slc6a8 ENSMUST00000164449 ENSMUSP00000126076 TRANSLATION protein_coding - - 5 625.0 0.0 12.68 1.0 770.9 21.0 -4,-5 0.1633 6 9.306 MINOR ENSMUSG00000019558 Slc6a8 ENSMUST00000033752 ENSMUSP00000033752 TRANSLATION protein_coding - CCDS30208.1 1 640.0 0.0 13.01 2.6 795.7 23.0 -4,-5 0.6475 6 12.082 MINOR ENSMUSG00000019558 Slc6a8 ENSMUST00000170614 - NO_TRANSLATION retained_intron ENSMUSG00000019558 Slc6a8 ENSMUST00000167828 - NO_TRANSLATION retained_intron ENSMUSG00000019558 Slc6a8 ENSMUST00000114464 ENSMUSP00000110108 TRANSLATION nonsense_mediated_decay start - 1 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000019558 Slc6a8 ENSMUST00000170574 - NO_TRANSLATION retained_intron ENSMUSG00000019558 Slc6a8 ENSMUST00000166200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019558 Slc6a8 ENSMUST00000114465 ENSMUSP00000110109 TRANSLATION protein_coding - CCDS53098.1 1 635.0 0.0 13.01 6.1 804.8 23.0 -4,-5 1.0 6 14.0 PRINCIPAL:1 ENSMUSG00000019558 Slc6a8 ENSMUST00000168831 ENSMUSP00000132921 TRANSLATION protein_coding start - 1 576.0 0.0 13.01 0.0 779.6 21.0 -4,-5 0.1002 3 -2.0 MINOR ENSMUSG00000095716 Btbd35f10 ENSMUST00000178621 ENSMUSP00000136228 TRANSLATION protein_coding - CCDS52973.1 - 498.0 0.0 0.8 0.0 40.8 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025592 Dach2 ENSMUST00000113378 ENSMUSP00000109005 TRANSLATION protein_coding - CCDS81165.1 1 448.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0343 - 0.0 MINOR ENSMUSG00000025592 Dach2 ENSMUST00000141552 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025592 Dach2 ENSMUST00000067219 ENSMUSP00000064393 TRANSLATION protein_coding - CCDS30363.1 1 634.0 0.0 1.0 2.3 125.5 0.0 -4,-2 1.0 - 9.0 PRINCIPAL:2 ENSMUSG00000025592 Dach2 ENSMUST00000113379 ENSMUSP00000109006 TRANSLATION protein_coding - CCDS81164.1 1 445.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0338 - 0.0 MINOR ENSMUSG00000025592 Dach2 ENSMUST00000123974 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025592 Dach2 ENSMUST00000113380 ENSMUSP00000109007 TRANSLATION protein_coding - CCDS81163.1 1 500.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.0364 - 0.0 MINOR ENSMUSG00000025592 Dach2 ENSMUST00000113382 ENSMUSP00000109009 TRANSLATION protein_coding - CCDS53175.1 1 606.0 0.0 1.0 1.1 125.5 0.0 -4,-2 0.5763 - 8.077 ALTERNATIVE:2 ENSMUSG00000025592 Dach2 ENSMUST00000146539 - NO_TRANSLATION retained_intron ENSMUSG00000041353 Tmem29 ENSMUST00000059256 ENSMUSP00000053632 TRANSLATION protein_coding - CCDS53218.1 1 204.0 0.0 0.0 0.4 215.9 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000041353 Tmem29 ENSMUST00000134601 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041353 Tmem29 ENSMUST00000148968 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041353 Tmem29 ENSMUST00000143526 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041353 Tmem29 ENSMUST00000163233 ENSMUSP00000132541 TRANSLATION protein_coding - CCDS53219.1 2 123.0 0.0 0.0 0.0 140.6 0.0 -4,-5 0.0447 - 1.482 MINOR ENSMUSG00000041353 Tmem29 ENSMUST00000128771 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041353 Tmem29 ENSMUST00000155740 - NO_TRANSLATION retained_intron ENSMUSG00000041353 Tmem29 ENSMUST00000173996 ENSMUSP00000134594 TRANSLATION protein_coding - CCDS53218.1 2 204.0 0.0 0.0 0.4 215.9 0.0 -4,-5 1.0 2 6.0 PRINCIPAL:1 ENSMUSG00000041353 Tmem29 ENSMUST00000151067 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041353 Tmem29 ENSMUST00000127532 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041353 Tmem29 ENSMUST00000141948 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041353 Tmem29 ENSMUST00000130339 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040808 S100g ENSMUST00000038769 ENSMUSP00000045120 TRANSLATION protein_coding - CCDS41203.1 1 79.0 12.0 2.0 10.3 85.4 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000033792 Atp7a ENSMUST00000133875 - NO_TRANSLATION retained_intron ENSMUSG00000033792 Atp7a ENSMUST00000134363 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033792 Atp7a ENSMUST00000055941 ENSMUSP00000058840 TRANSLATION protein_coding - CCDS53169.1 1 1492.0 13.0 15.864 0.1 385.7 6.0 -4,-5 0.7185 20 18.0 MINOR ENSMUSG00000033792 Atp7a ENSMUST00000113557 ENSMUSP00000109186 TRANSLATION protein_coding - CCDS41097.1 1 1491.0 13.0 15.864 4.3 385.7 6.0 -4,-5 1.0 20 20.0 PRINCIPAL:1 ENSMUSG00000051592 Ccnb3 ENSMUST00000056725 ENSMUSP00000052272 TRANSLATION protein_coding - CCDS29961.1 5 1396.0 0.0 6.35 0.0 204.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000051592 Ccnb3 ENSMUST00000115752 ENSMUSP00000111418 TRANSLATION protein_coding - CCDS29961.1 1 1396.0 0.0 6.35 0.0 204.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000060890 Arr3 ENSMUST00000113769 ENSMUSP00000109398 TRANSLATION protein_coding - CCDS41075.1 1 381.0 12.0 9.71 0.1 176.1 0.0 -4,-6 0.9948 - 18.0 PRINCIPAL:1 ENSMUSG00000060890 Arr3 ENSMUST00000141676 - NO_TRANSLATION retained_intron ENSMUSG00000060890 Arr3 ENSMUST00000164940 ENSMUSP00000132811 TRANSLATION protein_coding stop - 5 115.0 2.0 2.58 0.0 76.4 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000060890 Arr3 ENSMUST00000135237 - NO_TRANSLATION retained_intron ENSMUSG00000060890 Arr3 ENSMUST00000166688 - NO_TRANSLATION retained_intron ENSMUSG00000060890 Arr3 ENSMUST00000154771 - NO_TRANSLATION retained_intron ENSMUSG00000060890 Arr3 ENSMUST00000131906 - NO_TRANSLATION retained_intron ENSMUSG00000031257 Nox1 ENSMUST00000113275 ENSMUSP00000108900 TRANSLATION protein_coding - - 5 514.0 0.0 10.6 4.6 87.1 7.0 1,-4 0.2065 - 10.73 MINOR ENSMUSG00000031257 Nox1 ENSMUST00000033610 ENSMUSP00000033610 TRANSLATION protein_coding - CCDS30390.1 1 563.0 0.0 11.6 20.8 87.1 7.0 1,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000031257 Nox1 ENSMUST00000159231 ENSMUSP00000124225 TRANSLATION protein_coding stop - 1 75.0 0.0 1.25 0.0 0.0 2.0 -4,-2 0.0005 - -2.0 MINOR ENSMUSG00000031257 Nox1 ENSMUST00000159259 ENSMUSP00000124355 TRANSLATION protein_coding - - 5 526.0 0.0 10.6 6.7 80.3 6.0 1,-4 0.2353 - 10.686 MINOR ENSMUSG00000031257 Nox1 ENSMUST00000162833 ENSMUSP00000123841 TRANSLATION protein_coding stop - 1 75.0 0.0 1.25 0.0 0.0 2.0 -4,-2 0.0005 - -2.0 MINOR ENSMUSG00000043929 Klhl15 ENSMUST00000170594 ENSMUSP00000129734 TRANSLATION protein_coding - CCDS30278.1 1 604.0 0.0 1.8 30.9 230.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000043929 Klhl15 ENSMUST00000142691 - NO_TRANSLATION retained_intron ENSMUSG00000043929 Klhl15 ENSMUST00000113915 ENSMUSP00000109548 TRANSLATION protein_coding - CCDS30278.1 1 604.0 0.0 1.8 30.9 230.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000043929 Klhl15 ENSMUST00000113916 ENSMUSP00000109549 TRANSLATION protein_coding - CCDS30278.1 1 604.0 0.0 1.8 30.9 230.7 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:1 ENSMUSG00000043929 Klhl15 ENSMUST00000153900 ENSMUSP00000120863 TRANSLATION protein_coding stop - 3 106.0 0.0 0.8 0.0 74.8 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000043929 Klhl15 ENSMUST00000150999 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000043929 Klhl15 ENSMUST00000096369 ENSMUSP00000094097 TRANSLATION protein_coding - CCDS30279.1 1 248.0 0.0 1.7 0.0 145.0 0.0 -4,-5 0.0754 1 6.522 MINOR ENSMUSG00000043929 Klhl15 ENSMUST00000113908 ENSMUSP00000109541 TRANSLATION protein_coding - CCDS41062.1 1 237.0 0.0 1.4 2.3 144.3 0.0 -4,-5 0.0681 1 5.656 MINOR ENSMUSG00000043929 Klhl15 ENSMUST00000113911 ENSMUSP00000109544 TRANSLATION protein_coding - CCDS41062.1 1 237.0 0.0 1.4 2.3 144.3 0.0 -4,-5 0.0681 1 5.656 MINOR ENSMUSG00000079627 Rhox2h ENSMUST00000115162 ENSMUSP00000110816 TRANSLATION protein_coding - CCDS40942.1 1 191.0 0.0 1.4 0.3 48.4 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079627 Rhox2h ENSMUST00000184088 ENSMUSP00000139288 TRANSLATION protein_coding start - 5 91.0 0.0 0.4 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000197302 ENSMUSP00000143163 TRANSLATION nonsense_mediated_decay start - 5 135.0 4.0 2.03 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000126345 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031229 Atrx ENSMUST00000198567 ENSMUSP00000143007 TRANSLATION nonsense_mediated_decay start - 3 78.0 0.0 0.666 0.0 31.3 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000141609 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031229 Atrx ENSMUST00000127221 ENSMUSP00000143664 TRANSLATION nonsense_mediated_decay start - 3 12.0 0.0 0.33 0.0 0.0 0.0 -4,-5 0.0308 - -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000113573 ENSMUSP00000109203 TRANSLATION protein_coding - CCDS41095.1 1 2476.0 12.0 10.343 0.0 269.5 0.0 -4,-5 1.0 39 18.0 PRINCIPAL:1 ENSMUSG00000031229 Atrx ENSMUST00000198441 ENSMUSP00000143565 TRANSLATION protein_coding stop - 5 174.0 4.0 1.5 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000150914 ENSMUSP00000122034 TRANSLATION protein_coding stop - 1 385.0 12.0 4.33 0.0 0.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000155445 - NO_TRANSLATION retained_intron ENSMUSG00000031229 Atrx ENSMUST00000134381 ENSMUSP00000122875 TRANSLATION protein_coding stop - 3 238.0 12.0 4.13 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000101305 ENSMUSP00000098863 TRANSLATION protein_coding - - 1 181.0 0.0 0.2 0.0 0.0 0.0 -4,-2 0.0 1 0.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000133543 - NO_TRANSLATION retained_intron ENSMUSG00000031229 Atrx ENSMUST00000198209 ENSMUSP00000142726 TRANSLATION protein_coding start/stop - 5 526.0 0.0 0.975 0.0 0.0 0.0 -4,-5 0.0014 4 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000146193 - NO_TRANSLATION retained_intron ENSMUSG00000031229 Atrx ENSMUST00000198448 ENSMUSP00000143090 TRANSLATION protein_coding stop - 5 520.0 12.0 4.33 0.0 0.0 0.0 -4,-5 0.0 9 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000134507 ENSMUSP00000123085 TRANSLATION protein_coding stop - 1 347.0 12.0 4.13 0.0 0.0 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000142235 - NO_TRANSLATION retained_intron ENSMUSG00000031229 Atrx ENSMUST00000143361 - NO_TRANSLATION retained_intron ENSMUSG00000031229 Atrx ENSMUST00000200471 ENSMUSP00000143280 TRANSLATION protein_coding start - 3 334.0 0.0 0.375 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000154866 ENSMUSP00000121291 TRANSLATION protein_coding stop - 5 208.0 11.0 3.53 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000123174 - NO_TRANSLATION retained_intron ENSMUSG00000031229 Atrx ENSMUST00000196998 - NO_TRANSLATION retained_intron ENSMUSG00000031229 Atrx ENSMUST00000138765 - NO_TRANSLATION retained_intron ENSMUSG00000031229 Atrx ENSMUST00000128968 ENSMUSP00000121416 TRANSLATION protein_coding stop - 5 995.0 12.0 4.13 0.0 0.0 0.0 -4,-5 0.0107 15 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000137453 ENSMUSP00000120246 TRANSLATION protein_coding stop - 3 89.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000130980 ENSMUSP00000117528 TRANSLATION protein_coding stop - 5 61.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031229 Atrx ENSMUST00000199233 ENSMUSP00000143015 TRANSLATION protein_coding stop - 5 158.0 10.0 2.83 0.0 0.0 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000073077 Cfap47 ENSMUST00000101410 ENSMUSP00000098956 TRANSLATION protein_coding - - 5 943.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0915 1 0.0 ALTERNATIVE:2 ENSMUSG00000073077 Cfap47 ENSMUST00000114021 ENSMUSP00000109654 TRANSLATION protein_coding - - 5 360.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0621 - 0.0 ALTERNATIVE:2 ENSMUSG00000073077 Cfap47 ENSMUST00000196318 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073077 Cfap47 ENSMUST00000179788 ENSMUSP00000137161 TRANSLATION protein_coding start/stop - 5 418.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0458 - -2.0 MINOR ENSMUSG00000073077 Cfap47 ENSMUST00000197180 ENSMUSP00000142707 TRANSLATION protein_coding - - 5 3184.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.7488 1 0.0 PRINCIPAL:2 ENSMUSG00000073077 Cfap47 ENSMUST00000199433 - NO_TRANSLATION retained_intron ENSMUSG00000037005 Xpnpep2 ENSMUST00000129677 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037005 Xpnpep2 ENSMUST00000114998 ENSMUSP00000110650 TRANSLATION protein_coding - - 1 582.0 8.0 15.125 0.0 281.8 0.0 1,-2 0.0054 9 9.96 MINOR ENSMUSG00000037005 Xpnpep2 ENSMUST00000156654 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000037005 Xpnpep2 ENSMUST00000077775 ENSMUSP00000076951 TRANSLATION protein_coding - CCDS30106.1 1 674.0 8.0 17.125 9.3 349.1 1.0 1,-2 1.0 11 21.0 PRINCIPAL:1 ENSMUSG00000037005 Xpnpep2 ENSMUST00000115000 ENSMUSP00000110652 TRANSLATION protein_coding - CCDS81125.1 1 741.0 8.0 16.625 0.0 319.8 1.0 1,-2 0.209 11 15.24 MINOR ENSMUSG00000031079 Zfp300 ENSMUST00000154299 - NO_TRANSLATION retained_intron ENSMUSG00000031079 Zfp300 ENSMUST00000139060 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031079 Zfp300 ENSMUST00000040667 ENSMUSP00000046514 TRANSLATION protein_coding - CCDS30050.1 1 645.0 55.0 0.8 2.4 362.7 0.0 -4,-5 1.0 - 19.0 PRINCIPAL:1 ENSMUSG00000031352 Hccs ENSMUST00000112115 ENSMUSP00000107743 TRANSLATION protein_coding - CCDS30535.1 1 272.0 0.0 3.75 15.4 239.5 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000031352 Hccs ENSMUST00000033717 ENSMUSP00000033717 TRANSLATION protein_coding - CCDS30535.1 1 272.0 0.0 3.75 15.4 239.5 0.0 -4,-5 1.0 9 16.0 PRINCIPAL:1 ENSMUSG00000031352 Hccs ENSMUST00000154638 ENSMUSP00000133731 TRANSLATION nonsense_mediated_decay - - 5 93.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000041245 Wnk3 ENSMUST00000184730 ENSMUSP00000138822 TRANSLATION protein_coding - CCDS72450.1 1 1710.0 18.0 7.5 0.0 290.6 0.0 -4,-5 1.0 15 14.0 PRINCIPAL:2 ENSMUSG00000041245 Wnk3 ENSMUST00000184392 ENSMUSP00000139037 TRANSLATION protein_coding - CCDS72451.1 1 1757.0 18.0 7.5 0.0 290.6 0.0 -4,-5 0.5544 15 14.0 ALTERNATIVE:2 ENSMUSG00000041245 Wnk3 ENSMUST00000131844 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041245 Wnk3 ENSMUST00000133852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000041245 Wnk3 ENSMUST00000149140 ENSMUSP00000139255 TRANSLATION nonsense_mediated_decay - - 5 623.0 18.0 6.0 0.0 290.6 0.0 -4,-5 0.0443 3 -2.0 MINOR ENSMUSG00000031370 Zrsr2 ENSMUST00000132350 - NO_TRANSLATION retained_intron ENSMUSG00000031370 Zrsr2 ENSMUST00000139166 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031370 Zrsr2 ENSMUST00000147928 ENSMUSP00000122747 TRANSLATION protein_coding stop - 5 113.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031370 Zrsr2 ENSMUST00000124719 - NO_TRANSLATION retained_intron ENSMUSG00000031370 Zrsr2 ENSMUST00000112289 ENSMUSP00000107908 TRANSLATION protein_coding - CCDS41204.1 2 541.0 4.0 2.3 0.0 53.1 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031370 Zrsr2 ENSMUST00000145962 - NO_TRANSLATION retained_intron ENSMUSG00000031370 Zrsr2 ENSMUST00000127370 ENSMUSP00000120257 TRANSLATION protein_coding stop - 2 71.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031370 Zrsr2 ENSMUST00000090840 ENSMUSP00000088350 TRANSLATION protein_coding - CCDS41205.1 2 144.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0457 - 0.0 MINOR ENSMUSG00000025269 Apex2 ENSMUST00000152332 - NO_TRANSLATION retained_intron ENSMUSG00000025269 Apex2 ENSMUST00000124521 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025269 Apex2 ENSMUST00000112719 ENSMUSP00000108339 TRANSLATION protein_coding - - 1 246.0 0.0 3.42 0.0 50.3 0.0 -4,-2 0.0002 1 6.882 MINOR ENSMUSG00000025269 Apex2 ENSMUST00000112725 ENSMUSP00000108345 TRANSLATION protein_coding - - 5 260.0 0.0 3.42 0.0 50.1 0.0 -4,-2 0.0002 1 6.87 MINOR ENSMUSG00000025269 Apex2 ENSMUST00000112720 ENSMUSP00000108340 TRANSLATION protein_coding - CCDS30463.1 5 516.0 0.0 3.82 8.4 113.5 0.0 -4,-2 1.0 1 14.472 PRINCIPAL:1 ENSMUSG00000025269 Apex2 ENSMUST00000138958 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025269 Apex2 ENSMUST00000140207 ENSMUSP00000122554 TRANSLATION protein_coding start/stop - 3 265.0 0.0 3.783 0.0 49.7 0.0 -4,-7 0.0006 1 -2.0 MINOR ENSMUSG00000025269 Apex2 ENSMUST00000112727 ENSMUSP00000108347 TRANSLATION protein_coding - - 1 266.0 0.0 3.45 0.0 50.1 0.0 -4,-2 0.0002 1 6.93 MINOR ENSMUSG00000025269 Apex2 ENSMUST00000112721 ENSMUSP00000108341 TRANSLATION protein_coding - - 1 523.0 0.0 4.084 2.1 111.8 0.0 -4,-2 0.3137 1 12.345 MINOR ENSMUSG00000025269 Apex2 ENSMUST00000026303 ENSMUSP00000026303 TRANSLATION protein_coding - CCDS30463.1 1 516.0 0.0 3.82 8.4 113.5 0.0 -4,-2 1.0 1 14.472 PRINCIPAL:1 ENSMUSG00000041096 Tspyl2 ENSMUST00000044509 ENSMUSP00000046782 TRANSLATION protein_coding - CCDS30474.1 1 677.0 0.0 3.5 0.3 71.8 0.0 -4,-5 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000041096 Tspyl2 ENSMUST00000138918 - NO_TRANSLATION retained_intron ENSMUSG00000041096 Tspyl2 ENSMUST00000178165 ENSMUSP00000137121 TRANSLATION nonsense_mediated_decay start - 5 120.0 0.0 0.5 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000041096 Tspyl2 ENSMUST00000149685 - NO_TRANSLATION retained_intron ENSMUSG00000041096 Tspyl2 ENSMUST00000177748 - NO_TRANSLATION retained_intron ENSMUSG00000082229 Nap1l2 ENSMUST00000121720 ENSMUSP00000112677 TRANSLATION protein_coding - CCDS53164.1 - 460.0 0.0 0.165 4.2 283.5 0.0 -4,-5 1.0 1 14.0 PRINCIPAL:1 ENSMUSG00000073069 Mageb2 ENSMUST00000201779 ENSMUSP00000144620 TRANSLATION protein_coding - CCDS81151.1 1 330.0 0.0 0.6 0.0 0.0 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000073069 Mageb2 ENSMUST00000101397 ENSMUSP00000098945 TRANSLATION protein_coding - - - 380.0 0.0 0.6 0.0 0.0 0.0 -4,0 0.1141 - 6.0 ALTERNATIVE:2 ENSMUSG00000015342 Xk ENSMUST00000015486 ENSMUSP00000015486 TRANSLATION protein_coding - CCDS30008.1 1 446.0 0.0 0.0 8.7 287.2 0.0 3,-2 1.0 3 9.0 PRINCIPAL:1 ENSMUSG00000031253 Srpx2 ENSMUST00000113304 ENSMUSP00000108929 TRANSLATION protein_coding - CCDS41119.2 1 468.0 0.0 8.15 11.0 306.9 0.0 2,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000031253 Srpx2 ENSMUST00000033606 ENSMUSP00000033606 TRANSLATION protein_coding - CCDS41119.2 1 468.0 0.0 8.15 11.0 306.9 0.0 2,-2 1.0 9 15.0 PRINCIPAL:1 ENSMUSG00000036198 Arhgap36 ENSMUST00000042444 ENSMUSP00000040798 TRANSLATION protein_coding - - 5 533.0 0.0 2.42 5.2 129.0 0.0 -4,-1 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000036198 Arhgap36 ENSMUST00000130558 ENSMUSP00000119757 TRANSLATION protein_coding stop - 3 262.0 0.0 0.92 0.0 31.6 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000036198 Arhgap36 ENSMUST00000114904 ENSMUSP00000110554 TRANSLATION protein_coding - CCDS40963.1 1 590.0 0.0 2.42 1.7 129.0 0.0 -4,-1 0.6355 - 12.334 MINOR ENSMUSG00000036198 Arhgap36 ENSMUST00000132784 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036198 Arhgap36 ENSMUST00000151128 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000072930 Gm15107 ENSMUST00000112796 ENSMUSP00000108416 TRANSLATION protein_coding - CCDS53211.1 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:1 ENSMUSG00000087403 Kantr ENSMUST00000125102 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087403 Kantr ENSMUST00000181635 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087403 Kantr ENSMUST00000195280 ENSMUSP00000151626 TRANSLATION protein_coding - - 2 76.0 0.0 0.0 0.0 0.0 0.0 1,-3 0.626 - 0.0 PRINCIPAL:1 ENSMUSG00000087403 Kantr ENSMUST00000148326 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087403 Kantr ENSMUST00000154085 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087403 Kantr ENSMUST00000141922 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000087403 Kantr ENSMUST00000149098 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042386 Tex13b ENSMUST00000044179 ENSMUSP00000046203 TRANSLATION protein_coding - CCDS41152.1 1 186.0 0.0 2.0 0.0 209.0 0.0 -4,-5 1.0 1 12.0 PRINCIPAL:1 ENSMUSG00000042386 Tex13b ENSMUST00000132970 - NO_TRANSLATION retained_intron ENSMUSG00000025527 Satl1 ENSMUST00000124335 ENSMUSP00000122770 TRANSLATION protein_coding start - 1 433.0 17.0 3.75 0.0 43.6 0.0 -4,-2 0.1091 4 -2.0 MINOR ENSMUSG00000025527 Satl1 ENSMUST00000026601 ENSMUSP00000026601 TRANSLATION protein_coding - CCDS53173.1 1 744.0 17.0 3.75 0.0 43.6 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000031198 Fundc2 ENSMUST00000033541 ENSMUSP00000033541 TRANSLATION protein_coding - CCDS30239.1 1 151.0 0.0 2.2 10.0 97.9 0.0 -4,-5 1.0 5 15.0 PRINCIPAL:1 ENSMUSG00000031198 Fundc2 ENSMUST00000123540 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031198 Fundc2 ENSMUST00000147998 - NO_TRANSLATION retained_intron ENSMUSG00000079479 Fam236f ENSMUST00000113610 ENSMUSP00000109240 TRANSLATION protein_coding - CCDS53157.1 2 75.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.8435 - 0.0 PRINCIPAL:1 ENSMUSG00000031256 Cstf2 ENSMUST00000148080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031256 Cstf2 ENSMUST00000113286 ENSMUSP00000108911 TRANSLATION protein_coding - CCDS81170.1 1 510.0 0.0 2.7 0.0 197.2 0.0 -4,-7 0.0152 7 5.544 MINOR ENSMUSG00000031256 Cstf2 ENSMUST00000113287 ENSMUSP00000108912 TRANSLATION protein_coding - CCDS72430.1 1 554.0 0.0 3.9 0.1 264.8 0.0 -4,-7 0.3145 5 12.0 MINOR ENSMUSG00000031256 Cstf2 ENSMUST00000033609 ENSMUSP00000033609 TRANSLATION protein_coding - CCDS30389.1 1 580.0 0.0 3.9 9.1 264.8 0.0 -4,-7 1.0 7 15.0 PRINCIPAL:1 ENSMUSG00000031256 Cstf2 ENSMUST00000136510 ENSMUSP00000117806 TRANSLATION protein_coding start/stop - 3 191.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0001 4 -2.0 MINOR ENSMUSG00000031256 Cstf2 ENSMUST00000144483 ENSMUSP00000114837 TRANSLATION protein_coding start/stop - 3 184.0 0.0 1.558 0.0 152.0 0.0 -4,-6 0.0 2 -2.0 MINOR ENSMUSG00000031256 Cstf2 ENSMUST00000156778 ENSMUSP00000117592 TRANSLATION protein_coding start/stop - 5 259.0 0.0 0.0 0.0 40.6 0.0 -4,-6 0.0 4 -2.0 MINOR ENSMUSG00000031256 Cstf2 ENSMUST00000149658 - NO_TRANSLATION retained_intron ENSMUSG00000009596 Taf7l ENSMUST00000131311 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000009596 Taf7l ENSMUST00000009740 ENSMUSP00000009740 TRANSLATION protein_coding - CCDS53184.1 1 471.0 0.0 1.63 0.0 187.3 0.0 -4,-5 0.1975 - 3.396 MINOR ENSMUSG00000009596 Taf7l ENSMUST00000113223 ENSMUSP00000108849 TRANSLATION protein_coding - - 5 350.0 0.0 2.88 0.0 150.7 0.0 -4,-7 0.4315 - 6.0 PRINCIPAL:1 ENSMUSG00000031380 Vegfd ENSMUST00000033751 ENSMUSP00000033751 TRANSLATION protein_coding - CCDS30521.1 1 358.0 0.0 2.0 19.7 81.8 0.0 -4,-6 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000031380 Vegfd ENSMUST00000124851 - NO_TRANSLATION retained_intron ENSMUSG00000071815 Fthl17e ENSMUST00000096509 ENSMUSP00000094254 TRANSLATION protein_coding - CCDS30003.1 - 176.0 0.0 1.0 4.4 92.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031357 Syap1 ENSMUST00000033723 ENSMUSP00000033723 TRANSLATION protein_coding - CCDS30511.1 1 365.0 0.0 2.75 6.4 44.7 0.0 -4,-5 1.0 16 14.0 PRINCIPAL:1 ENSMUSG00000031357 Syap1 ENSMUST00000134629 - NO_TRANSLATION retained_intron ENSMUSG00000033460 Armcx1 ENSMUST00000113198 ENSMUSP00000108823 TRANSLATION protein_coding - CCDS30398.1 2 456.0 0.0 1.0 0.0 330.9 0.0 -4,-7 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000033460 Armcx1 ENSMUST00000138421 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033460 Armcx1 ENSMUST00000137173 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033460 Armcx1 ENSMUST00000035748 ENSMUSP00000043965 TRANSLATION protein_coding - CCDS30398.1 1 456.0 0.0 1.0 0.0 330.9 0.0 -4,-7 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000033460 Armcx1 ENSMUST00000051256 ENSMUSP00000053909 TRANSLATION protein_coding - CCDS30398.1 1 456.0 0.0 1.0 0.0 330.9 0.0 -4,-7 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000033460 Armcx1 ENSMUST00000113201 ENSMUSP00000108826 TRANSLATION protein_coding - CCDS30398.1 2 456.0 0.0 1.0 0.0 330.9 0.0 -4,-7 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000033460 Armcx1 ENSMUST00000129697 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033460 Armcx1 ENSMUST00000113199 ENSMUSP00000108824 TRANSLATION protein_coding - CCDS30398.1 1 456.0 0.0 1.0 0.0 330.9 0.0 -4,-7 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000033460 Armcx1 ENSMUST00000113197 ENSMUSP00000108822 TRANSLATION protein_coding - CCDS30398.1 1 456.0 0.0 1.0 0.0 330.9 0.0 -4,-7 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000033460 Armcx1 ENSMUST00000125684 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035371 Ssx9 ENSMUST00000103001 ENSMUSP00000100066 TRANSLATION protein_coding - CCDS30000.1 1 170.0 0.0 1.8 0.0 69.6 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095662 H2al1g ENSMUST00000179859 ENSMUSP00000137575 TRANSLATION protein_coding - CCDS57733.1 - 105.0 0.0 1.0 0.0 45.6 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025288 4933436I01Rik ENSMUST00000026325 ENSMUSP00000026325 TRANSLATION protein_coding - CCDS30170.1 1 429.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:1 ENSMUSG00000085139 Sertm2 ENSMUST00000135687 ENSMUSP00000148011 TRANSLATION protein_coding - - 1 89.0 0.0 0.0 16.7 48.9 0.0 -4,-7 1.0 - 10.0 PRINCIPAL:1 ENSMUSG00000079642 Ct47 ENSMUST00000115253 ENSMUSP00000110908 TRANSLATION protein_coding - - 5 297.0 0.0 0.0 0.0 156.8 0.0 -4,-5 0.7338 - 6.0 PRINCIPAL:1 ENSMUSG00000031262 Cenpi ENSMUST00000129782 ENSMUSP00000117799 TRANSLATION protein_coding stop - 2 31.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.0002 - -2.0 MINOR ENSMUSG00000031262 Cenpi ENSMUST00000144678 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031262 Cenpi ENSMUST00000125604 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031262 Cenpi ENSMUST00000101251 ENSMUSP00000098809 TRANSLATION protein_coding - CCDS30393.1 1 746.0 0.0 2.22 0.1 893.3 0.0 -4,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000031262 Cenpi ENSMUST00000081064 ENSMUSP00000079851 TRANSLATION protein_coding - CCDS30393.1 1 746.0 0.0 2.22 0.1 893.3 0.0 -4,-2 1.0 2 12.0 PRINCIPAL:1 ENSMUSG00000071723 Gspt2 ENSMUST00000137033 ENSMUSP00000139286 TRANSLATION nonsense_mediated_decay - - 2 129.0 0.0 0.0 0.0 26.6 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000071723 Gspt2 ENSMUST00000096368 ENSMUSP00000109523 TRANSLATION protein_coding - CCDS41064.1 - 632.0 14.0 1.0 0.4 316.3 0.0 -4,-5 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000025261 Huwe1 ENSMUST00000150020 - NO_TRANSLATION retained_intron ENSMUSG00000025261 Huwe1 ENSMUST00000138023 ENSMUSP00000120057 TRANSLATION nonsense_mediated_decay start - 5 1176.0 0.0 2.0 0.0 419.2 0.0 -4,-7 0.0085 31 -2.0 MINOR ENSMUSG00000025261 Huwe1 ENSMUST00000147666 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025261 Huwe1 ENSMUST00000130243 - NO_TRANSLATION retained_intron ENSMUSG00000025261 Huwe1 ENSMUST00000152757 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025261 Huwe1 ENSMUST00000150882 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025261 Huwe1 ENSMUST00000026292 ENSMUSP00000026292 TRANSLATION protein_coding - CCDS41176.1 1 4378.0 0.0 13.0 3.4 879.0 0.0 -4,-6 1.0 87 9.0 PRINCIPAL:4 ENSMUSG00000025261 Huwe1 ENSMUST00000150426 - NO_TRANSLATION retained_intron ENSMUSG00000025261 Huwe1 ENSMUST00000112622 ENSMUSP00000108241 TRANSLATION protein_coding - - 1 4377.0 0.0 13.0 3.4 879.0 0.0 -4,-6 0.8645 87 9.0 ALTERNATIVE:2 ENSMUSG00000025261 Huwe1 ENSMUST00000130234 - NO_TRANSLATION retained_intron ENSMUSG00000025261 Huwe1 ENSMUST00000149344 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025261 Huwe1 ENSMUST00000239245 ENSMUSP00000159236 TRANSLATION protein_coding start/stop - - 226.0 0.0 0.0 0.0 91.1 0.0 -4,-7 0.0001 5 -2.0 MINOR ENSMUSG00000025261 Huwe1 ENSMUST00000139245 - NO_TRANSLATION retained_intron ENSMUSG00000025261 Huwe1 ENSMUST00000132453 - NO_TRANSLATION retained_intron ENSMUSG00000025261 Huwe1 ENSMUST00000139386 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025261 Huwe1 ENSMUST00000137816 - NO_TRANSLATION retained_intron ENSMUSG00000025261 Huwe1 ENSMUST00000133051 - NO_TRANSLATION retained_intron ENSMUSG00000025261 Huwe1 ENSMUST00000138566 ENSMUSP00000122612 TRANSLATION nonsense_mediated_decay - - 3 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0212 - -2.0 MINOR ENSMUSG00000025261 Huwe1 ENSMUST00000131786 - NO_TRANSLATION retained_intron ENSMUSG00000025261 Huwe1 ENSMUST00000156616 ENSMUSP00000114357 TRANSLATION protein_coding stop - 3 9.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0319 - -2.0 MINOR ENSMUSG00000025261 Huwe1 ENSMUST00000139909 - NO_TRANSLATION retained_intron ENSMUSG00000025261 Huwe1 ENSMUST00000153687 ENSMUSP00000114862 TRANSLATION nonsense_mediated_decay - - 1 40.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0212 - -2.0 MINOR ENSMUSG00000025261 Huwe1 ENSMUST00000123306 ENSMUSP00000118185 TRANSLATION nonsense_mediated_decay start - 3 150.0 0.0 0.0 0.0 73.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000025261 Huwe1 ENSMUST00000129714 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031271 Serpina7 ENSMUST00000152457 ENSMUSP00000120672 TRANSLATION protein_coding stop - 2 72.0 0.0 0.6 0.0 0.0 0.0 3,-2 0.0027 - -2.0 MINOR ENSMUSG00000031271 Serpina7 ENSMUST00000060824 ENSMUSP00000056166 TRANSLATION protein_coding - - 1 287.0 0.0 3.92 0.0 232.7 0.0 -4,-7 0.0 3 3.438 MINOR ENSMUSG00000031271 Serpina7 ENSMUST00000033626 ENSMUSP00000033626 TRANSLATION protein_coding - CCDS53200.1 1 426.0 0.0 5.2 3.9 354.5 0.0 2,-3 1.0 4 13.0 PRINCIPAL:1 ENSMUSG00000058254 Tspan7 ENSMUST00000115526 ENSMUSP00000111188 TRANSLATION protein_coding - - 1 230.0 0.0 2.95 3.0 163.4 4.0 -1,-5 0.6797 2 6.1 MINOR ENSMUSG00000058254 Tspan7 ENSMUST00000076354 ENSMUSP00000075692 TRANSLATION protein_coding - CCDS30016.1 1 249.0 0.0 3.4 0.0 175.8 5.0 -1,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000058254 Tspan7 ENSMUST00000149982 - NO_TRANSLATION retained_intron ENSMUSG00000037636 Slc25a43 ENSMUST00000047655 ENSMUSP00000035392 TRANSLATION protein_coding - CCDS40925.1 1 341.0 14.0 4.6 14.1 210.4 0.0 -2,-4 1.0 - 22.0 PRINCIPAL:1 ENSMUSG00000037636 Slc25a43 ENSMUST00000133699 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094861 Mageb6b1 ENSMUST00000063726 ENSMUSP00000064613 TRANSLATION protein_coding - CCDS53131.1 - 344.0 0.0 0.5 0.4 51.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031424 Kir3dl1 ENSMUST00000113105 ENSMUSP00000108729 TRANSLATION protein_coding - CCDS41134.1 1 409.0 0.0 3.1 0.0 58.5 2.0 2,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031424 Kir3dl1 ENSMUST00000113104 ENSMUSP00000108728 TRANSLATION protein_coding - CCDS81176.1 1 316.0 0.0 2.1 0.0 24.0 2.0 1,-2 0.0413 - 6.462 MINOR ENSMUSG00000031150 Ccdc120 ENSMUST00000139499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031150 Ccdc120 ENSMUST00000156787 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031150 Ccdc120 ENSMUST00000033490 ENSMUSP00000033490 TRANSLATION protein_coding - CCDS29972.1 1 629.0 0.0 0.0 5.4 142.5 0.0 -4,-5 1.0 11 8.0 PRINCIPAL:1 ENSMUSG00000031150 Ccdc120 ENSMUST00000224502 ENSMUSP00000153379 TRANSLATION protein_coding start - - 278.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0012 6 -2.0 MINOR ENSMUSG00000031150 Ccdc120 ENSMUST00000128289 ENSMUSP00000119351 TRANSLATION protein_coding stop - 3 38.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0003 1 -2.0 MINOR ENSMUSG00000031150 Ccdc120 ENSMUST00000153925 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031150 Ccdc120 ENSMUST00000128011 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031150 Ccdc120 ENSMUST00000128852 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031150 Ccdc120 ENSMUST00000154977 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031143 Ccdc22 ENSMUST00000033483 ENSMUSP00000033483 TRANSLATION protein_coding - CCDS29966.1 1 627.0 0.0 8.5 10.3 713.5 0.0 -4,-5 1.0 19 15.0 PRINCIPAL:1 ENSMUSG00000031143 Ccdc22 ENSMUST00000144674 - NO_TRANSLATION retained_intron ENSMUSG00000041700 Lhfpl1 ENSMUST00000040084 ENSMUSP00000044054 TRANSLATION protein_coding - CCDS30458.1 1 220.0 0.0 4.0 8.1 192.7 0.0 0,-4 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000041700 Lhfpl1 ENSMUST00000123443 ENSMUSP00000114442 TRANSLATION protein_coding stop - 3 33.0 0.0 1.0 0.0 0.0 0.0 0,-4 0.0 - -2.0 MINOR ENSMUSG00000016534 Lamp2 ENSMUST00000074913 ENSMUSP00000074448 TRANSLATION protein_coding - CCDS72369.1 1 416.0 0.0 6.15 0.1 363.4 1.0 3,-2 0.369 6 7.598 MINOR ENSMUSG00000016534 Lamp2 ENSMUST00000061755 ENSMUSP00000052283 TRANSLATION protein_coding - CCDS30093.1 1 415.0 0.0 6.35 0.1 377.3 1.0 3,-2 1.0 6 8.0 PRINCIPAL:2 ENSMUSG00000016534 Lamp2 ENSMUST00000136817 - NO_TRANSLATION retained_intron ENSMUSG00000016534 Lamp2 ENSMUST00000016678 ENSMUSP00000016678 TRANSLATION protein_coding - CCDS30092.1 1 415.0 0.0 6.35 0.1 366.6 1.0 3,-2 0.6726 7 8.0 ALTERNATIVE:2 ENSMUSG00000016534 Lamp2 ENSMUST00000144663 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031340 Gabre ENSMUST00000148499 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031340 Gabre ENSMUST00000064780 ENSMUSP00000066543 TRANSLATION protein_coding - CCDS30186.1 1 916.0 0.0 4.35 0.0 227.8 0.0 1,-3 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031340 Gabre ENSMUST00000153740 - NO_TRANSLATION retained_intron ENSMUSG00000031388 Naa10 ENSMUST00000141211 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031388 Naa10 ENSMUST00000149591 - NO_TRANSLATION retained_intron ENSMUSG00000031388 Naa10 ENSMUST00000124446 - NO_TRANSLATION retained_intron ENSMUSG00000031388 Naa10 ENSMUST00000153929 - NO_TRANSLATION retained_intron ENSMUSG00000031388 Naa10 ENSMUST00000143076 - NO_TRANSLATION retained_intron ENSMUSG00000031388 Naa10 ENSMUST00000139105 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031388 Naa10 ENSMUST00000114387 ENSMUSP00000110029 TRANSLATION protein_coding - CCDS81139.1 2 170.0 22.0 4.93 0.1 58.3 0.0 -4,-5 0.052 3 16.2 MINOR ENSMUSG00000031388 Naa10 ENSMUST00000114389 ENSMUSP00000110031 TRANSLATION protein_coding - CCDS53102.1 1 225.0 22.0 5.08 0.4 57.2 0.0 -4,-5 0.0724 4 16.386 MINOR ENSMUSG00000031388 Naa10 ENSMUST00000096316 ENSMUSP00000094040 TRANSLATION protein_coding - - 2 206.0 22.0 4.83 0.0 57.5 0.0 -4,-5 0.0087 3 15.918 MINOR ENSMUSG00000031388 Naa10 ENSMUST00000114390 ENSMUSP00000110032 TRANSLATION protein_coding - - 5 233.0 21.0 5.83 8.0 46.7 0.0 -4,-5 0.7148 7 18.831 MINOR ENSMUSG00000031388 Naa10 ENSMUST00000033763 ENSMUSP00000033763 TRANSLATION protein_coding - CCDS30217.1 1 235.0 22.0 5.83 8.8 57.2 0.0 -4,-5 1.0 7 20.886 PRINCIPAL:1 ENSMUSG00000031388 Naa10 ENSMUST00000114391 ENSMUSP00000110033 TRANSLATION protein_coding - - 5 220.0 14.0 5.33 0.0 43.0 0.0 -4,-5 0.0068 6 10.092 MINOR ENSMUSG00000033436 Armcx2 ENSMUST00000141322 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033436 Armcx2 ENSMUST00000149902 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033436 Armcx2 ENSMUST00000119010 ENSMUSP00000112507 TRANSLATION protein_coding - CCDS30401.1 1 784.0 0.0 0.6 0.0 354.6 0.0 -3,-6 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000033436 Armcx2 ENSMUST00000150814 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000033436 Armcx2 ENSMUST00000113193 ENSMUSP00000108818 TRANSLATION protein_coding - CCDS30401.1 1 784.0 0.0 0.6 0.0 354.6 0.0 -3,-6 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000033436 Armcx2 ENSMUST00000035559 ENSMUSP00000049147 TRANSLATION protein_coding - CCDS30401.1 1 784.0 0.0 0.6 0.0 354.6 0.0 -3,-6 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000033436 Armcx2 ENSMUST00000168264 ENSMUSP00000127305 TRANSLATION protein_coding - CCDS30401.1 1 784.0 0.0 0.6 0.0 354.6 0.0 -3,-6 1.0 14 12.0 PRINCIPAL:1 ENSMUSG00000068149 Tex13c3 ENSMUST00000089246 ENSMUSP00000086657 TRANSLATION protein_coding - - 1 219.0 0.0 1.0 1.0 212.5 0.0 -4,-5 0.7961 - 12.0 PRINCIPAL:1 ENSMUSG00000034480 Diaph2 ENSMUST00000113320 ENSMUSP00000108946 TRANSLATION protein_coding - - 5 1098.0 0.0 17.86 0.0 797.4 0.0 -4,-5 0.2481 17 7.14 ALTERNATIVE:2 ENSMUSG00000034480 Diaph2 ENSMUST00000155333 - NO_TRANSLATION retained_intron ENSMUSG00000034480 Diaph2 ENSMUST00000133457 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000034480 Diaph2 ENSMUST00000037854 ENSMUSP00000039334 TRANSLATION protein_coding - CCDS53180.1 1 1102.0 0.0 18.19 0.0 799.1 0.0 -4,-5 1.0 17 8.0 PRINCIPAL:2 ENSMUSG00000034480 Diaph2 ENSMUST00000143668 - NO_TRANSLATION retained_intron ENSMUSG00000034480 Diaph2 ENSMUST00000127577 - NO_TRANSLATION retained_intron ENSMUSG00000031274 Col4a5 ENSMUST00000128669 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031274 Col4a5 ENSMUST00000130732 ENSMUSP00000116610 TRANSLATION protein_coding start - 1 800.0 0.0 13.644 0.0 534.2 0.0 -4,-5 0.0086 2 -2.0 MINOR ENSMUSG00000031274 Col4a5 ENSMUST00000112930 ENSMUSP00000108552 TRANSLATION protein_coding - CCDS41154.1 1 1691.0 0.0 16.184 2.5 729.6 0.0 3,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000031274 Col4a5 ENSMUST00000112931 ENSMUSP00000108553 TRANSLATION protein_coding - CCDS41154.1 1 1691.0 0.0 16.184 2.5 729.6 0.0 3,-2 1.0 2 13.0 PRINCIPAL:1 ENSMUSG00000071764 Or11q2 ENSMUST00000214375 ENSMUSP00000149950 TRANSLATION protein_coding - CCDS30116.1 5 319.0 0.0 1.0 0.0 163.7 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071764 Or11q2 ENSMUST00000214273 ENSMUSP00000150556 TRANSLATION protein_coding - CCDS30116.1 5 319.0 0.0 1.0 0.0 163.7 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071764 Or11q2 ENSMUST00000096449 ENSMUSP00000094186 TRANSLATION protein_coding - CCDS30116.1 - 319.0 0.0 1.0 0.0 163.7 6.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072995 Cpxcr1 ENSMUST00000101269 ENSMUSP00000098827 TRANSLATION protein_coding - CCDS30367.1 1 322.0 3.0 0.0 0.0 0.0 0.0 -4,-5 0.8684 - 3.0 PRINCIPAL:1 ENSMUSG00000031344 Gabrq ENSMUST00000114553 ENSMUSP00000110200 TRANSLATION protein_coding - CCDS72390.1 1 525.0 0.0 5.5 0.3 265.1 3.0 3,-3 0.5609 - 8.0 ALTERNATIVE:2 ENSMUSG00000031344 Gabrq ENSMUST00000033711 ENSMUSP00000033711 TRANSLATION protein_coding - CCDS30188.1 1 638.0 0.0 5.5 0.4 264.3 3.0 3,-3 1.0 - 8.0 PRINCIPAL:2 ENSMUSG00000073245 Gm14819 ENSMUST00000169396 ENSMUSP00000137268 TRANSLATION protein_coding - CCDS53049.1 5 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073245 Gm14819 ENSMUST00000101645 ENSMUSP00000099168 TRANSLATION protein_coding - CCDS53049.1 1 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063728 Magea6 ENSMUST00000112562 ENSMUSP00000108181 TRANSLATION protein_coding - CCDS30488.1 5 325.0 0.0 0.6 0.0 25.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000063728 Magea6 ENSMUST00000076986 ENSMUSP00000076250 TRANSLATION protein_coding - CCDS30488.1 1 325.0 0.0 0.6 0.0 25.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031392 Irak1 ENSMUST00000138397 ENSMUSP00000121016 TRANSLATION protein_coding start/stop - 5 257.0 2.0 1.73 0.0 60.4 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031392 Irak1 ENSMUST00000144353 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031392 Irak1 ENSMUST00000114360 ENSMUSP00000110000 TRANSLATION protein_coding - CCDS53103.1 1 712.0 3.0 7.255 0.0 175.6 0.0 -4,-6 0.3891 6 11.0 ALTERNATIVE:2 ENSMUSG00000031392 Irak1 ENSMUST00000148317 ENSMUSP00000122519 TRANSLATION protein_coding start - 5 216.0 0.0 1.45 0.0 0.0 0.0 -2,-4 0.0 1 -2.0 MINOR ENSMUSG00000031392 Irak1 ENSMUST00000146210 - NO_TRANSLATION retained_intron ENSMUSG00000031392 Irak1 ENSMUST00000128436 ENSMUSP00000118570 TRANSLATION protein_coding start - 5 146.0 0.0 1.83 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000031392 Irak1 ENSMUST00000033769 ENSMUSP00000033769 TRANSLATION protein_coding - CCDS53105.1 1 750.0 3.0 7.255 0.0 174.8 0.0 -4,-6 0.1831 7 11.0 ALTERNATIVE:2 ENSMUSG00000031392 Irak1 ENSMUST00000124417 ENSMUSP00000116167 TRANSLATION protein_coding start/stop - 3 147.0 1.0 1.495 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031392 Irak1 ENSMUST00000101458 ENSMUSP00000099001 TRANSLATION protein_coding - - 5 683.0 3.0 6.805 2.0 174.2 0.0 -4,-6 0.3939 6 10.457 MINOR ENSMUSG00000031392 Irak1 ENSMUST00000145677 - NO_TRANSLATION retained_intron ENSMUSG00000031392 Irak1 ENSMUST00000140130 - NO_TRANSLATION retained_intron ENSMUSG00000031392 Irak1 ENSMUST00000128759 - NO_TRANSLATION retained_intron ENSMUSG00000031392 Irak1 ENSMUST00000149871 - NO_TRANSLATION retained_intron ENSMUSG00000031392 Irak1 ENSMUST00000124580 ENSMUSP00000117379 TRANSLATION protein_coding start/stop - 5 199.0 1.0 1.995 0.0 0.0 0.0 -4,-7 0.0 1 -2.0 MINOR ENSMUSG00000031392 Irak1 ENSMUST00000114353 ENSMUSP00000109993 TRANSLATION protein_coding - - 5 631.0 3.0 5.925 1.0 170.8 0.0 -4,-6 0.0783 6 8.342 MINOR ENSMUSG00000031392 Irak1 ENSMUST00000114354 ENSMUSP00000109994 TRANSLATION protein_coding - CCDS53104.1 1 711.0 3.0 7.255 3.8 175.6 0.0 -4,-6 0.9973 7 12.0 PRINCIPAL:3 ENSMUSG00000031392 Irak1 ENSMUST00000149809 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031392 Irak1 ENSMUST00000068286 ENSMUSP00000064448 TRANSLATION protein_coding - CCDS30219.2 1 710.0 3.0 7.255 3.8 175.6 0.0 -4,-6 1.0 6 12.0 ALTERNATIVE:2 ENSMUSG00000031392 Irak1 ENSMUST00000148706 - NO_TRANSLATION retained_intron ENSMUSG00000031392 Irak1 ENSMUST00000114352 ENSMUSP00000109992 TRANSLATION protein_coding - CCDS30219.2 1 710.0 3.0 7.255 3.8 175.6 0.0 -4,-6 1.0 6 12.0 ALTERNATIVE:2 ENSMUSG00000031392 Irak1 ENSMUST00000126583 ENSMUSP00000115508 TRANSLATION protein_coding start/stop - 5 383.0 3.0 5.425 0.0 102.9 0.0 -4,-5 0.0 4 -2.0 MINOR ENSMUSG00000031392 Irak1 ENSMUST00000132144 ENSMUSP00000117042 TRANSLATION protein_coding start/stop - 5 128.0 1.0 1.33 0.0 0.0 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000057457 Phex ENSMUST00000079945 ENSMUSP00000078863 TRANSLATION protein_coding - CCDS30497.1 1 749.0 3.0 13.29 19.5 584.5 1.0 -4,-7 1.0 6 19.0 PRINCIPAL:1 ENSMUSG00000057457 Phex ENSMUST00000138396 ENSMUSP00000122953 TRANSLATION protein_coding stop - 5 548.0 0.0 8.06 0.0 358.2 1.0 -4,-7 0.0 4 -2.0 MINOR ENSMUSG00000057457 Phex ENSMUST00000135713 ENSMUSP00000121281 TRANSLATION protein_coding start - - 34.0 0.0 1.0 0.0 25.5 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000053593 Fate1 ENSMUST00000137031 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000053593 Fate1 ENSMUST00000066116 ENSMUSP00000065715 TRANSLATION protein_coding - - 1 99.0 0.0 1.175 0.0 31.2 0.0 -4,-5 0.7682 - 12.0 PRINCIPAL:1 ENSMUSG00000053593 Fate1 ENSMUST00000114569 ENSMUSP00000110216 TRANSLATION protein_coding - - 5 99.0 0.0 1.175 0.0 31.2 0.0 -4,-5 0.7682 - 12.0 PRINCIPAL:1 ENSMUSG00000000881 Dlg3 ENSMUST00000113735 ENSMUSP00000109364 TRANSLATION protein_coding - CCDS53149.1 1 512.0 14.0 9.999 8.7 329.2 0.0 -2,2 0.4795 17 9.2 MINOR ENSMUSG00000000881 Dlg3 ENSMUST00000000901 ENSMUSP00000000901 TRANSLATION protein_coding - CCDS72413.1 1 817.0 14.0 14.239 8.0 566.2 0.0 -4,-5 1.0 33 15.725 MINOR ENSMUSG00000000881 Dlg3 ENSMUST00000087984 ENSMUSP00000085299 TRANSLATION protein_coding - CCDS30307.1 1 849.0 14.0 14.739 2.7 607.0 0.0 -4,-5 0.4637 33 14.663 PRINCIPAL:1 ENSMUSG00000000881 Dlg3 ENSMUST00000147863 - NO_TRANSLATION retained_intron ENSMUSG00000000881 Dlg3 ENSMUST00000148076 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000881 Dlg3 ENSMUST00000146772 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000881 Dlg3 ENSMUST00000151020 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000000881 Dlg3 ENSMUST00000113736 ENSMUSP00000109365 TRANSLATION protein_coding - CCDS53148.1 1 835.0 14.0 14.539 2.7 607.0 0.0 -4,-5 0.49 33 14.261 MINOR ENSMUSG00000031328 Flna ENSMUST00000033699 ENSMUSP00000033699 TRANSLATION protein_coding - - 5 2647.0 0.0 38.99 8.6 1435.2 0.0 -4,-7 0.8345 133 13.884 MINOR ENSMUSG00000031328 Flna ENSMUST00000101454 ENSMUSP00000098997 TRANSLATION protein_coding - CCDS41018.1 1 2639.0 0.0 39.32 8.6 1442.8 0.0 -4,-7 1.0 133 15.0 PRINCIPAL:1 ENSMUSG00000031328 Flna ENSMUST00000127924 ENSMUSP00000117324 TRANSLATION nonsense_mediated_decay start - 3 74.0 0.0 1.5 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031328 Flna ENSMUST00000156766 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031328 Flna ENSMUST00000133609 - NO_TRANSLATION retained_intron ENSMUSG00000031328 Flna ENSMUST00000144429 ENSMUSP00000123278 TRANSLATION nonsense_mediated_decay start - 1 511.0 0.0 7.79 0.0 260.3 0.0 -4,-5 0.0 21 -2.0 MINOR ENSMUSG00000031328 Flna ENSMUST00000114299 ENSMUSP00000109938 TRANSLATION protein_coding - CCDS41018.1 5 2639.0 0.0 39.32 8.6 1442.8 0.0 -4,-7 1.0 133 15.0 PRINCIPAL:1 ENSMUSG00000031328 Flna ENSMUST00000133288 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031328 Flna ENSMUST00000141528 - NO_TRANSLATION retained_intron ENSMUSG00000031328 Flna ENSMUST00000239316 ENSMUSP00000159282 TRANSLATION nonsense_mediated_decay start - - 73.0 0.0 0.6 0.0 45.1 0.0 -4,-5 0.0 2 -2.0 MINOR ENSMUSG00000031328 Flna ENSMUST00000130203 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031328 Flna ENSMUST00000133174 - NO_TRANSLATION retained_intron ENSMUSG00000031328 Flna ENSMUST00000127463 ENSMUSP00000114827 TRANSLATION protein_coding start/stop - 5 280.0 0.0 6.08 0.0 91.3 0.0 -4,-6 0.0 11 -2.0 MINOR ENSMUSG00000031328 Flna ENSMUST00000124950 - NO_TRANSLATION retained_intron ENSMUSG00000031328 Flna ENSMUST00000130007 ENSMUSP00000121082 TRANSLATION protein_coding start - 5 2583.0 0.0 39.32 0.0 1442.8 0.0 -4,-5 0.3406 131 -2.0 MINOR ENSMUSG00000031328 Flna ENSMUST00000150554 ENSMUSP00000116758 TRANSLATION protein_coding start/stop - 5 277.0 0.0 5.75 0.0 164.3 0.0 -4,-7 0.0 18 -2.0 MINOR ENSMUSG00000041649 Klf8 ENSMUST00000039545 ENSMUSP00000044317 TRANSLATION protein_coding - CCDS30481.1 1 355.0 12.0 2.32 7.6 64.8 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000041649 Klf8 ENSMUST00000112574 ENSMUSP00000108193 TRANSLATION protein_coding - CCDS30481.1 1 355.0 12.0 2.32 7.6 64.8 0.0 -4,-5 1.0 - 20.0 PRINCIPAL:1 ENSMUSG00000041649 Klf8 ENSMUST00000143880 ENSMUSP00000117653 TRANSLATION protein_coding stop - 5 19.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000079701 Ssxb3 ENSMUST00000089379 ENSMUSP00000086797 TRANSLATION protein_coding - CCDS29999.1 1 170.0 0.0 1.8 0.0 81.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000079701 Ssxb3 ENSMUST00000089374 ENSMUSP00000086792 TRANSLATION protein_coding - CCDS29999.1 1 170.0 0.0 1.8 0.0 81.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037341 Slc9a7 ENSMUST00000115393 ENSMUSP00000111051 TRANSLATION protein_coding - - 1 548.0 0.0 7.05 0.0 309.2 12.0 -2,-5 0.0889 2 12.0 MINOR ENSMUSG00000037341 Slc9a7 ENSMUST00000130938 - NO_TRANSLATION retained_intron ENSMUSG00000037341 Slc9a7 ENSMUST00000072451 ENSMUSP00000072274 TRANSLATION protein_coding - CCDS40884.1 1 726.0 0.0 7.05 6.3 309.2 12.0 -2,-5 1.0 3 14.0 PRINCIPAL:1 ENSMUSG00000037341 Slc9a7 ENSMUST00000224372 ENSMUSP00000153063 TRANSLATION protein_coding start - - 313.0 0.0 3.0 0.0 95.5 7.0 -4,-2 0.0055 1 -2.0 MINOR ENSMUSG00000037341 Slc9a7 ENSMUST00000151845 - NO_TRANSLATION retained_intron ENSMUSG00000052372 Il1rapl1 ENSMUST00000113966 ENSMUSP00000109599 TRANSLATION protein_coding - CCDS53128.1 5 696.0 0.0 7.52 29.0 154.0 1.0 -1,-4 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000052372 Il1rapl1 ENSMUST00000078875 ENSMUSP00000077915 TRANSLATION protein_coding - CCDS53128.1 5 696.0 0.0 7.52 29.0 154.0 1.0 -1,-4 1.0 10 16.0 PRINCIPAL:1 ENSMUSG00000052372 Il1rapl1 ENSMUST00000113964 ENSMUSP00000109597 TRANSLATION protein_coding - - 1 383.0 0.0 5.75 0.0 58.6 0.0 -1,-4 0.0 3 2.736 MINOR ENSMUSG00000093806 Asmt ENSMUST00000178693 ENSMUSP00000137135 TRANSLATION protein_coding - CCDS85832.1 1 387.0 20.0 6.25 0.0 351.5 0.0 -4,-2 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000073085 Cldn34b4 ENSMUST00000249074 ENSMUSP00000159557 TRANSLATION protein_coding - CCDS53116.1 - 211.0 0.0 0.6 0.4 45.9 4.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073085 Cldn34b4 ENSMUST00000249073 ENSMUSP00000159556 TRANSLATION protein_coding - CCDS53116.1 - 211.0 0.0 0.6 0.4 45.9 4.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073085 Cldn34b4 ENSMUST00000101419 ENSMUSP00000098964 TRANSLATION protein_coding - CCDS53116.1 1 211.0 0.0 0.6 0.4 45.9 4.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072945 Ripply1 ENSMUST00000101217 ENSMUSP00000098778 TRANSLATION protein_coding - CCDS30436.1 1 201.0 0.0 0.4 0.0 113.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073130 Gm1141 ENSMUST00000154780 ENSMUSP00000114284 TRANSLATION protein_coding - - 3 758.0 0.0 0.3 0.0 0.0 0.0 -4,-7 0.7171 - 6.0 PRINCIPAL:1 ENSMUSG00000073130 Gm1141 ENSMUST00000101495 ENSMUSP00000099034 TRANSLATION protein_coding - - 1 475.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0505 - 0.0 MINOR ENSMUSG00000025260 Hsd17b10 ENSMUST00000151200 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025260 Hsd17b10 ENSMUST00000026289 ENSMUSP00000026289 TRANSLATION protein_coding - CCDS30471.1 1 261.0 28.0 5.264 23.2 166.5 0.0 -2,0 1.0 16 21.802 PRINCIPAL:1 ENSMUSG00000025260 Hsd17b10 ENSMUST00000140804 - NO_TRANSLATION retained_intron ENSMUSG00000025260 Hsd17b10 ENSMUST00000112617 ENSMUSP00000108236 TRANSLATION protein_coding - - 5 271.0 28.0 5.363 0.0 155.3 0.0 -2,0 0.0762 15 17.328 MINOR ENSMUSG00000071708 Sms ENSMUST00000123770 ENSMUSP00000115810 TRANSLATION protein_coding stop - 5 62.0 0.0 1.58 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000071708 Sms ENSMUST00000145477 ENSMUSP00000131254 TRANSLATION nonsense_mediated_decay - - 5 258.0 17.0 5.18 0.0 77.1 0.0 -4,-5 0.0 12 -2.0 MINOR ENSMUSG00000071708 Sms ENSMUST00000112529 ENSMUSP00000108148 TRANSLATION protein_coding - CCDS41189.1 1 366.0 20.0 8.01 28.8 177.7 0.0 -4,-5 1.0 15 22.0 PRINCIPAL:1 ENSMUSG00000071708 Sms ENSMUST00000146026 - NO_TRANSLATION retained_intron ENSMUSG00000071708 Sms ENSMUST00000127089 - NO_TRANSLATION retained_intron ENSMUSG00000008682 Rpl10 ENSMUST00000151702 ENSMUSP00000115919 TRANSLATION protein_coding stop - 5 201.0 0.0 5.08 0.0 150.6 0.0 -4,-6 0.0022 - -2.0 MINOR ENSMUSG00000008682 Rpl10 ENSMUST00000138954 - NO_TRANSLATION retained_intron ENSMUSG00000008682 Rpl10 ENSMUST00000142142 - NO_TRANSLATION retained_intron ENSMUSG00000008682 Rpl10 ENSMUST00000146584 - NO_TRANSLATION retained_intron ENSMUSG00000008682 Rpl10 ENSMUST00000125775 - NO_TRANSLATION retained_intron ENSMUSG00000008682 Rpl10 ENSMUST00000008826 ENSMUSP00000008826 TRANSLATION protein_coding - CCDS41019.1 1 214.0 0.0 5.58 32.9 150.6 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000008682 Rpl10 ENSMUST00000074085 ENSMUSP00000082055 TRANSLATION protein_coding - CCDS41019.1 1 214.0 0.0 5.58 32.9 150.6 0.0 -4,-6 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000008682 Rpl10 ENSMUST00000134330 - NO_TRANSLATION retained_intron ENSMUSG00000008682 Rpl10 ENSMUST00000135690 ENSMUSP00000119500 TRANSLATION protein_coding stop - 5 166.0 0.0 3.08 0.0 81.9 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000008682 Rpl10 ENSMUST00000144434 - NO_TRANSLATION retained_intron ENSMUSG00000008682 Rpl10 ENSMUST00000149171 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031217 Efnb1 ENSMUST00000052839 ENSMUSP00000050716 TRANSLATION protein_coding - CCDS30298.1 1 345.0 0.0 2.6 9.8 152.8 0.0 1,-3 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000031217 Efnb1 ENSMUST00000151750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031337 Mtm1 ENSMUST00000033700 ENSMUSP00000033700 TRANSLATION protein_coding - - 5 603.0 7.0 11.188 21.4 570.2 0.0 -4,-5 0.8604 21 22.0 PRINCIPAL:1 ENSMUSG00000031337 Mtm1 ENSMUST00000025391 ENSMUSP00000025391 TRANSLATION protein_coding - CCDS53090.1 1 572.0 7.0 10.188 0.0 494.9 0.0 -4,-5 0.0249 21 11.484 MINOR ENSMUSG00000031337 Mtm1 ENSMUST00000129722 - NO_TRANSLATION retained_intron ENSMUSG00000031337 Mtm1 ENSMUST00000134859 - NO_TRANSLATION retained_intron ENSMUSG00000031337 Mtm1 ENSMUST00000114621 ENSMUSP00000110268 TRANSLATION protein_coding - - 5 572.0 7.0 10.188 0.0 494.9 0.0 -4,-5 0.0162 21 11.484 MINOR ENSMUSG00000031337 Mtm1 ENSMUST00000101501 ENSMUSP00000099040 TRANSLATION protein_coding - CCDS53089.1 1 162.0 0.0 3.24 0.0 75.7 0.0 -4,-5 0.0053 7 0.0 MINOR ENSMUSG00000031337 Mtm1 ENSMUST00000061970 ENSMUSP00000057182 TRANSLATION protein_coding - CCDS30177.1 1 603.0 7.0 11.188 21.4 570.2 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000031337 Mtm1 ENSMUST00000171933 ENSMUSP00000125798 TRANSLATION protein_coding - CCDS30177.1 1 603.0 7.0 11.188 21.4 570.2 0.0 -4,-5 1.0 21 22.0 PRINCIPAL:1 ENSMUSG00000031337 Mtm1 ENSMUST00000126208 - NO_TRANSLATION retained_intron ENSMUSG00000031337 Mtm1 ENSMUST00000152810 - NO_TRANSLATION retained_intron ENSMUSG00000031337 Mtm1 ENSMUST00000114617 ENSMUSP00000110264 TRANSLATION protein_coding - - 5 603.0 7.0 11.188 21.4 570.2 0.0 -4,-5 0.8604 21 22.0 PRINCIPAL:1 ENSMUSG00000031337 Mtm1 ENSMUST00000156452 - NO_TRANSLATION retained_intron ENSMUSG00000031337 Mtm1 ENSMUST00000151415 - NO_TRANSLATION retained_intron ENSMUSG00000067194 Eif1ax ENSMUST00000133252 - NO_TRANSLATION retained_intron ENSMUSG00000067194 Eif1ax ENSMUST00000087143 ENSMUSP00000084387 TRANSLATION protein_coding - CCDS41192.1 1 144.0 0.0 4.33 31.9 76.4 0.0 -4,-5 1.0 2 16.0 PRINCIPAL:1 ENSMUSG00000015217 Hmgb3 ENSMUST00000132145 - NO_TRANSLATION retained_intron ENSMUSG00000015217 Hmgb3 ENSMUST00000015361 ENSMUSP00000015361 TRANSLATION protein_coding - CCDS30180.1 1 200.0 0.0 3.4 0.4 202.1 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000015217 Hmgb3 ENSMUST00000114582 ENSMUSP00000110229 TRANSLATION protein_coding - CCDS30180.1 1 200.0 0.0 3.4 0.4 202.1 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000015217 Hmgb3 ENSMUST00000072699 ENSMUSP00000110232 TRANSLATION protein_coding - CCDS30180.1 1 200.0 0.0 3.4 0.4 202.1 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000015217 Hmgb3 ENSMUST00000088874 ENSMUSP00000086260 TRANSLATION protein_coding - CCDS30180.1 2 200.0 0.0 3.4 0.4 202.1 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000015217 Hmgb3 ENSMUST00000123100 ENSMUSP00000116937 TRANSLATION protein_coding stop - 5 159.0 0.0 3.0 0.0 194.6 0.0 -4,-5 0.0068 10 -2.0 MINOR ENSMUSG00000073016 Uprt ENSMUST00000087867 ENSMUSP00000085175 TRANSLATION protein_coding - CCDS41093.1 1 310.0 9.0 5.2 10.1 183.3 0.0 -4,-6 1.0 9 21.0 PRINCIPAL:1 ENSMUSG00000042498 Radx ENSMUST00000046763 ENSMUSP00000046045 TRANSLATION protein_coding - CCDS85808.1 1 849.0 0.0 0.0 8.2 0.0 0.0 -4,-6 1.0 6 3.0 PRINCIPAL:4 ENSMUSG00000042498 Radx ENSMUST00000125750 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000042498 Radx ENSMUST00000113030 ENSMUSP00000108653 TRANSLATION protein_coding - CCDS30434.1 1 850.0 0.0 0.0 5.9 0.0 0.0 -4,-6 0.8524 6 2.043 ALTERNATIVE:1 ENSMUSG00000062393 Dgkk ENSMUST00000145302 ENSMUSP00000123079 TRANSLATION protein_coding - - 1 1350.0 12.0 1.0 0.0 345.2 0.0 -4,-7 1.0 2 18.0 PRINCIPAL:1 ENSMUSG00000072964 Bhlhb9 ENSMUST00000151989 - NO_TRANSLATION retained_intron ENSMUSG00000072964 Bhlhb9 ENSMUST00000207433 - NO_TRANSLATION retained_intron ENSMUSG00000072964 Bhlhb9 ENSMUST00000068755 ENSMUSP00000068067 TRANSLATION protein_coding - CCDS30410.1 1 539.0 0.0 0.6 0.4 302.0 0.0 -4,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000072964 Bhlhb9 ENSMUST00000148374 ENSMUSP00000121154 TRANSLATION protein_coding stop - 2 95.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0 - -2.0 MINOR ENSMUSG00000072964 Bhlhb9 ENSMUST00000180025 ENSMUSP00000137213 TRANSLATION protein_coding - CCDS30410.1 2 539.0 0.0 0.6 0.4 302.0 0.0 -4,-2 1.0 3 12.0 PRINCIPAL:1 ENSMUSG00000019087 Atp6ap1 ENSMUST00000135914 - NO_TRANSLATION retained_intron ENSMUSG00000019087 Atp6ap1 ENSMUST00000136056 ENSMUSP00000117604 TRANSLATION nonsense_mediated_decay start - 3 68.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000019087 Atp6ap1 ENSMUST00000019231 ENSMUSP00000019231 TRANSLATION protein_coding - CCDS30226.1 1 463.0 0.0 5.0 5.7 180.6 0.0 1,-4 1.0 8 14.0 PRINCIPAL:1 ENSMUSG00000019087 Atp6ap1 ENSMUST00000144506 - NO_TRANSLATION retained_intron ENSMUSG00000019087 Atp6ap1 ENSMUST00000147275 ENSMUSP00000116162 TRANSLATION protein_coding stop - 5 272.0 0.0 2.25 0.0 0.0 0.0 1,-4 0.0 3 -2.0 MINOR ENSMUSG00000019087 Atp6ap1 ENSMUST00000147900 ENSMUSP00000117006 TRANSLATION protein_coding stop - 5 224.0 0.0 0.0 0.0 0.0 0.0 1,-4 0.0007 5 -2.0 MINOR ENSMUSG00000019087 Atp6ap1 ENSMUST00000124797 ENSMUSP00000118722 TRANSLATION nonsense_mediated_decay start - 5 101.0 0.0 0.0 0.0 0.0 0.0 2,-2 0.0019 2 -2.0 MINOR ENSMUSG00000019087 Atp6ap1 ENSMUST00000144075 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000019087 Atp6ap1 ENSMUST00000114171 ENSMUSP00000109808 TRANSLATION protein_coding - - 1 415.0 0.0 4.0 0.0 50.6 0.0 1,-4 0.0 7 4.002 MINOR ENSMUSG00000019087 Atp6ap1 ENSMUST00000154630 ENSMUSP00000116432 TRANSLATION protein_coding start - 3 54.0 0.0 1.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031373 Car5b ENSMUST00000126650 - NO_TRANSLATION retained_intron ENSMUSG00000031373 Car5b ENSMUST00000033739 ENSMUSP00000033739 TRANSLATION protein_coding - CCDS30515.1 1 317.0 3.0 5.75 8.7 293.8 0.0 -4,0 1.0 5 18.0 PRINCIPAL:1 ENSMUSG00000073207 Ccdc160 ENSMUST00000101588 ENSMUSP00000099121 TRANSLATION protein_coding - CCDS30126.1 1 323.0 0.0 0.6 5.2 0.0 0.0 -4,-5 1.0 2 8.0 PRINCIPAL:1 ENSMUSG00000094624 Gm4836 ENSMUST00000179874 ENSMUSP00000137394 TRANSLATION protein_coding - CCDS30055.1 1 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000057615 Ldoc1 ENSMUST00000075983 ENSMUSP00000075366 TRANSLATION protein_coding - CCDS30163.1 - 151.0 0.0 1.0 0.0 172.6 0.0 -3,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000037315 Jade3 ENSMUST00000043693 ENSMUSP00000048529 TRANSLATION protein_coding - - 1 823.0 11.0 2.2 11.1 191.5 0.0 -4,-6 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000037315 Jade3 ENSMUST00000224892 ENSMUSP00000153028 TRANSLATION nonsense_mediated_decay - - - 121.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 1 -2.0 MINOR ENSMUSG00000037315 Jade3 ENSMUST00000136093 - NO_TRANSLATION retained_intron ENSMUSG00000037315 Jade3 ENSMUST00000115384 ENSMUSP00000111042 TRANSLATION protein_coding - - 1 823.0 11.0 2.2 11.1 191.5 0.0 -4,-6 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000090084 Srpx ENSMUST00000115544 ENSMUSP00000111206 TRANSLATION protein_coding - - 1 444.0 0.0 8.0 3.9 299.2 0.0 3,-1 0.6504 11 8.4 ALTERNATIVE:2 ENSMUSG00000090084 Srpx ENSMUST00000147334 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000090084 Srpx ENSMUST00000115543 ENSMUSP00000111205 TRANSLATION protein_coding - - 1 380.0 0.0 7.0 0.0 273.9 0.0 2,-2 0.0164 9 5.002 MINOR ENSMUSG00000090084 Srpx ENSMUST00000044789 ENSMUSP00000047926 TRANSLATION protein_coding - CCDS30013.1 1 464.0 0.0 8.3 3.9 299.2 0.0 2,-1 1.0 11 9.0 PRINCIPAL:2 ENSMUSG00000073125 Xlr3b ENSMUST00000101486 ENSMUSP00000099026 TRANSLATION protein_coding - CCDS41009.1 1 226.0 0.0 4.6 0.4 110.5 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000073125 Xlr3b ENSMUST00000137641 - NO_TRANSLATION retained_intron ENSMUSG00000073125 Xlr3b ENSMUST00000138149 - NO_TRANSLATION retained_intron ENSMUSG00000094885 Ott ENSMUST00000177606 ENSMUSP00000136694 TRANSLATION protein_coding - - 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6074 - 0.0 PRINCIPAL:1 ENSMUSG00000094885 Ott ENSMUST00000177554 ENSMUSP00000137360 TRANSLATION protein_coding - CCDS41167.1 1 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:1 ENSMUSG00000094885 Ott ENSMUST00000179348 ENSMUSP00000135957 TRANSLATION protein_coding - - 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6074 - 0.0 PRINCIPAL:1 ENSMUSG00000050921 P2ry10 ENSMUST00000150494 ENSMUSP00000115201 TRANSLATION protein_coding start - 1 393.0 0.0 0.65 0.0 106.6 8.0 -2,-1 0.1108 - -2.0 MINOR ENSMUSG00000050921 P2ry10 ENSMUST00000118666 ENSMUSP00000113507 TRANSLATION protein_coding - CCDS30346.1 1 328.0 0.0 0.6 10.5 106.6 7.0 -4,-7 1.0 - 14.538 PRINCIPAL:1 ENSMUSG00000050921 P2ry10 ENSMUST00000053375 ENSMUSP00000061296 TRANSLATION protein_coding - CCDS30346.1 1 328.0 0.0 0.6 10.5 106.6 7.0 -4,-7 1.0 - 14.538 PRINCIPAL:1 ENSMUSG00000094941 Gm15093 ENSMUST00000179021 ENSMUSP00000136661 TRANSLATION protein_coding - CCDS53214.1 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:1 ENSMUSG00000031171 Ftsj1 ENSMUST00000126924 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031171 Ftsj1 ENSMUST00000144953 - NO_TRANSLATION retained_intron ENSMUSG00000031171 Ftsj1 ENSMUST00000033513 ENSMUSP00000033513 TRANSLATION protein_coding - CCDS29994.1 1 324.0 20.0 6.395 7.4 230.9 0.0 -4,-6 1.0 3 16.0 PRINCIPAL:4 ENSMUSG00000031171 Ftsj1 ENSMUST00000115595 ENSMUSP00000111258 TRANSLATION protein_coding - CCDS72340.1 1 322.0 20.0 6.395 7.4 230.9 0.0 -4,-6 0.9442 3 16.0 ALTERNATIVE:1 ENSMUSG00000031171 Ftsj1 ENSMUST00000147467 - NO_TRANSLATION retained_intron ENSMUSG00000031171 Ftsj1 ENSMUST00000115594 ENSMUSP00000111257 TRANSLATION protein_coding - - 5 308.0 20.0 6.395 0.1 230.9 0.0 -4,-6 0.1345 2 14.0 MINOR ENSMUSG00000031171 Ftsj1 ENSMUST00000149063 ENSMUSP00000121646 TRANSLATION protein_coding start - 5 111.0 0.0 0.645 0.0 0.0 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000031393 Mecp2 ENSMUST00000033770 ENSMUSP00000033770 TRANSLATION protein_coding - CCDS41016.1 1 501.0 0.0 2.9 0.0 60.4 0.0 -3,-5 0.1907 22 12.0 MINOR ENSMUSG00000031393 Mecp2 ENSMUST00000198358 - NO_TRANSLATION retained_intron ENSMUSG00000031393 Mecp2 ENSMUST00000100750 ENSMUSP00000098314 TRANSLATION protein_coding - CCDS41017.1 1 484.0 0.0 2.9 5.9 60.4 0.0 -4,-5 1.0 22 14.0 PRINCIPAL:1 ENSMUSG00000031393 Mecp2 ENSMUST00000140399 ENSMUSP00000119947 TRANSLATION protein_coding - - 5 189.0 0.0 1.42 0.0 53.1 0.0 -3,-5 0.0003 9 8.214 MINOR ENSMUSG00000031393 Mecp2 ENSMUST00000123362 ENSMUSP00000118842 TRANSLATION protein_coding - - 5 172.0 0.0 1.42 0.0 53.1 0.0 -4,-5 0.0003 9 8.214 MINOR ENSMUSG00000101381 Btbd35f16 ENSMUST00000185755 ENSMUSP00000141118 TRANSLATION protein_coding - CCDS72326.1 - 498.0 0.0 0.8 5.4 39.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000038344 Txlng ENSMUST00000150080 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000038344 Txlng ENSMUST00000112315 ENSMUSP00000107934 TRANSLATION protein_coding - CCDS81194.1 1 241.0 0.0 3.0 0.0 178.5 0.0 -4,-5 0.0037 - 0.0 MINOR ENSMUSG00000038344 Txlng ENSMUST00000131463 - NO_TRANSLATION retained_intron ENSMUSG00000038344 Txlng ENSMUST00000112316 ENSMUSP00000107935 TRANSLATION protein_coding - CCDS72463.1 1 475.0 0.0 7.35 0.0 384.1 0.0 -4,-5 0.176 4 12.0 MINOR ENSMUSG00000038344 Txlng ENSMUST00000041370 ENSMUSP00000038615 TRANSLATION protein_coding - CCDS30510.1 1 524.0 0.0 7.35 7.1 384.1 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:1 ENSMUSG00000038344 Txlng ENSMUST00000112314 ENSMUSP00000107933 TRANSLATION protein_coding - - 2 202.0 0.0 3.0 0.0 178.5 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000098078 Gm26992 ENSMUST00000182089 ENSMUSP00000138142 TRANSLATION protein_coding,RT start - 2 76.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.5807 - -2.0 PRINCIPAL:1 ENSMUSG00000094378 Gm15097 ENSMUST00000101180 ENSMUSP00000098740 TRANSLATION protein_coding - CCDS53216.2 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.8893 - 0.0 PRINCIPAL:2 ENSMUSG00000094378 Gm15097 ENSMUST00000112741 ENSMUSP00000108361 TRANSLATION protein_coding - - 5 449.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.6074 - 0.0 ALTERNATIVE:2 ENSMUSG00000031165 Was ENSMUST00000033505 ENSMUSP00000033505 TRANSLATION protein_coding - CCDS29984.1 1 520.0 0.0 5.55 0.0 234.3 0.0 -4,-6 1.0 10 12.0 PRINCIPAL:1 ENSMUSG00000031165 Was ENSMUST00000146029 - NO_TRANSLATION retained_intron ENSMUSG00000056281 Or11n2 ENSMUST00000217355 ENSMUSP00000150512 TRANSLATION protein_coding - CCDS30118.1 5 310.0 0.0 1.0 0.1 174.0 6.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000056281 Or11n2 ENSMUST00000070304 ENSMUSP00000065196 TRANSLATION protein_coding - CCDS30118.1 - 310.0 0.0 1.0 0.1 174.0 6.0 -2,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031333 Abcb7 ENSMUST00000140333 - NO_TRANSLATION retained_intron ENSMUSG00000031333 Abcb7 ENSMUST00000033695 ENSMUSP00000033695 TRANSLATION protein_coding - CCDS53167.1 1 752.0 12.0 10.1315 9.9 245.6 0.0 -2,-1 1.0 17 21.0 PRINCIPAL:1 ENSMUSG00000041658 Rragb ENSMUST00000144175 ENSMUSP00000134162 TRANSLATION protein_coding stop - 5 116.0 13.0 2.58 0.0 129.9 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000041658 Rragb ENSMUST00000039720 ENSMUSP00000039013 TRANSLATION protein_coding - CCDS30480.1 1 374.0 20.0 8.73 9.2 352.0 0.0 -4,-5 1.0 1 21.0 PRINCIPAL:1 ENSMUSG00000009406 Elk1 ENSMUST00000148133 - NO_TRANSLATION retained_intron ENSMUSG00000009406 Elk1 ENSMUST00000009550 ENSMUSP00000009550 TRANSLATION protein_coding - CCDS30048.1 1 429.0 0.0 1.0 4.2 124.1 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000073139 Tmem185a ENSMUST00000154400 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073139 Tmem185a ENSMUST00000114630 ENSMUSP00000110277 TRANSLATION protein_coding - - 1 350.0 0.0 4.75 31.9 208.9 10.0 -3,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000073139 Tmem185a ENSMUST00000134954 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000073139 Tmem185a ENSMUST00000101506 ENSMUSP00000099043 TRANSLATION protein_coding - CCDS30176.1 1 322.0 0.0 4.0 3.5 111.3 9.0 -3,-5 0.1229 1 4.968 MINOR ENSMUSG00000089996 Tmsb15b2 ENSMUST00000069803 ENSMUSP00000063549 TRANSLATION protein_coding - CCDS41138.1 2 45.0 0.0 1.33 26.0 71.0 0.0 -4,-5 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000025262 Fam120c ENSMUST00000125924 - NO_TRANSLATION retained_intron ENSMUSG00000025262 Fam120c ENSMUST00000073364 ENSMUSP00000073082 TRANSLATION protein_coding - CCDS41175.1 1 1091.0 0.0 0.0 5.9 0.0 0.0 -4,-5 1.0 22 2.0 PRINCIPAL:1 ENSMUSG00000073247 Gm10486 ENSMUST00000101647 ENSMUSP00000099170 TRANSLATION protein_coding - CCDS40921.1 1 212.0 0.0 2.5 0.0 35.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000042433 Dnaaf6b ENSMUST00000044806 ENSMUSP00000048754 TRANSLATION protein_coding - CCDS30438.1 1 218.0 0.0 2.75 3.3 23.8 0.0 -4,-5 1.0 - 13.0 PRINCIPAL:1 ENSMUSG00000042282 Gucy2f ENSMUST00000042530 ENSMUSP00000044521 TRANSLATION protein_coding - CCDS30446.1 1 1108.0 0.0 6.412 7.0 553.5 0.0 1,2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000031351 Zfp185 ENSMUST00000114546 ENSMUSP00000110193 TRANSLATION protein_coding - CCDS53091.1 1 485.0 8.0 1.6 0.0 0.0 0.0 -4,-5 0.6863 7 12.0 ALTERNATIVE:2 ENSMUSG00000031351 Zfp185 ENSMUST00000134588 ENSMUSP00000115266 TRANSLATION protein_coding stop - 3 52.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0204 - -2.0 MINOR ENSMUSG00000031351 Zfp185 ENSMUST00000164800 ENSMUSP00000126066 TRANSLATION protein_coding - CCDS30191.2 1 486.0 8.0 1.6 0.0 0.0 0.0 -4,-5 0.9545 7 12.0 PRINCIPAL:2 ENSMUSG00000071665 Foxr2 ENSMUST00000096265 ENSMUSP00000093984 TRANSLATION protein_coding - CCDS30479.1 1 302.0 0.0 0.2 0.4 84.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071665 Foxr2 ENSMUST00000163801 ENSMUSP00000128452 TRANSLATION protein_coding - CCDS30479.1 5 302.0 0.0 0.2 0.4 84.9 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000071773 Rhox1 ENSMUST00000115210 ENSMUSP00000110865 TRANSLATION protein_coding - CCDS40929.1 1 224.0 0.0 1.4 0.0 50.4 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000047757 Fancb ENSMUST00000057150 ENSMUSP00000051402 TRANSLATION protein_coding - - 5 706.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0831 - 0.0 ALTERNATIVE:2 ENSMUSG00000047757 Fancb ENSMUST00000167446 ENSMUSP00000128141 TRANSLATION protein_coding - CCDS53242.1 1 853.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.9244 - 0.0 PRINCIPAL:2 ENSMUSG00000071679 Rtl4 ENSMUST00000096301 ENSMUSP00000108463 TRANSLATION protein_coding - CCDS41158.1 - 304.0 4.0 0.0 1.1 0.0 0.0 -4,-5 0.8651 - 5.0 PRINCIPAL:1 ENSMUSG00000071679 Rtl4 ENSMUST00000112843 ENSMUSP00000108462 TRANSLATION protein_coding - CCDS41158.1 1 304.0 4.0 0.0 1.1 0.0 0.0 -4,-5 0.8651 - 5.0 PRINCIPAL:1 ENSMUSG00000072479 Xlr5b ENSMUST00000114518 ENSMUSP00000110164 TRANSLATION protein_coding - CCDS53095.1 1 236.0 0.0 5.0 0.4 127.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072479 Xlr5b ENSMUST00000097221 ENSMUSP00000110163 TRANSLATION protein_coding - CCDS53095.1 5 236.0 0.0 5.0 0.4 127.0 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000072479 Xlr5b ENSMUST00000135742 ENSMUSP00000120174 TRANSLATION protein_coding stop - 5 198.0 0.0 3.75 0.0 119.2 0.0 -4,-5 0.0011 - -2.0 MINOR ENSMUSG00000040855 Reps2 ENSMUST00000154424 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040855 Reps2 ENSMUST00000155863 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000040855 Reps2 ENSMUST00000101102 ENSMUSP00000098661 TRANSLATION protein_coding - CCDS30508.1 1 648.0 4.0 3.75 2.6 0.0 0.0 -4,-5 1.0 17 11.0 PRINCIPAL:4 ENSMUSG00000040855 Reps2 ENSMUST00000112334 ENSMUSP00000107953 TRANSLATION protein_coding - CCDS72462.1 1 647.0 4.0 3.75 2.6 0.0 0.0 -4,-5 0.9532 17 11.0 ALTERNATIVE:2 ENSMUSG00000040855 Reps2 ENSMUST00000155043 - NO_TRANSLATION retained_intron ENSMUSG00000052549 Arl13a ENSMUST00000064476 ENSMUSP00000064416 TRANSLATION protein_coding - CCDS53182.1 1 372.0 14.0 2.85 0.4 102.4 0.0 -4,-7 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000082226 Gm715 ENSMUST00000117865 ENSMUSP00001091660 TRANSLATION protein_coding - - - 276.0 0.0 0.48 5.5 300.4 0.0 -4,-5 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000094601 Gm5926 ENSMUST00000178459 ENSMUSP00000136853 TRANSLATION protein_coding - - - 236.0 0.0 1.0 0.1 216.3 0.0 -4,-7 0.7888 - 12.0 PRINCIPAL:1 ENSMUSG00000094601 Gm5926 ENSMUST00000177740 ENSMUSP00000136043 TRANSLATION protein_coding - - - 236.0 0.0 1.0 0.1 216.3 0.0 -4,-7 0.7888 - 12.0 PRINCIPAL:1 ENSMUSG00000031161 Hdac6 ENSMUST00000033501 ENSMUSP00000033501 TRANSLATION protein_coding - CCDS40845.1 5 1149.0 6.0 21.0 0.1 615.0 0.0 -4,-6 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000031161 Hdac6 ENSMUST00000115642 ENSMUSP00000111306 TRANSLATION protein_coding - CCDS40845.1 1 1149.0 6.0 21.0 0.1 615.0 0.0 -4,-6 1.0 17 18.0 PRINCIPAL:1 ENSMUSG00000031161 Hdac6 ENSMUST00000154200 - NO_TRANSLATION retained_intron ENSMUSG00000031161 Hdac6 ENSMUST00000154244 ENSMUSP00000123482 TRANSLATION protein_coding stop - 3 41.0 0.0 0.0 0.0 0.0 0.0 -4,-6 0.0 - -2.0 MINOR ENSMUSG00000031161 Hdac6 ENSMUST00000151916 - NO_TRANSLATION retained_intron ENSMUSG00000031161 Hdac6 ENSMUST00000137499 - NO_TRANSLATION retained_intron ENSMUSG00000031161 Hdac6 ENSMUST00000156127 - NO_TRANSLATION retained_intron ENSMUSG00000031161 Hdac6 ENSMUST00000133349 ENSMUSP00000120348 TRANSLATION protein_coding stop - 3 197.0 0.0 3.8 0.0 32.5 0.0 -4,-6 0.0 3 -2.0 MINOR ENSMUSG00000031161 Hdac6 ENSMUST00000145675 ENSMUSP00000121653 TRANSLATION protein_coding stop - 1 1008.0 6.0 18.25 0.0 563.7 0.0 -4,-6 0.0494 16 -2.0 MINOR ENSMUSG00000031161 Hdac6 ENSMUST00000153788 - NO_TRANSLATION retained_intron ENSMUSG00000025151 Maged1 ENSMUST00000026142 ENSMUSP00000026142 TRANSLATION protein_coding - CCDS30280.1 1 775.0 0.0 4.54 0.4 0.0 0.0 -4,-5 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000025151 Maged1 ENSMUST00000153386 - NO_TRANSLATION retained_intron ENSMUSG00000025151 Maged1 ENSMUST00000133982 - NO_TRANSLATION retained_intron ENSMUSG00000025151 Maged1 ENSMUST00000141702 - NO_TRANSLATION retained_intron ENSMUSG00000025151 Maged1 ENSMUST00000138146 - NO_TRANSLATION retained_intron ENSMUSG00000025151 Maged1 ENSMUST00000139375 - NO_TRANSLATION retained_intron ENSMUSG00000025151 Maged1 ENSMUST00000138731 - NO_TRANSLATION retained_intron ENSMUSG00000094596 Btbd35f20 ENSMUST00000179325 ENSMUSP00000137373 TRANSLATION protein_coding - CCDS57724.1 - 498.0 0.0 0.8 5.4 41.2 0.0 -4,-2 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000046550 Spin2c ENSMUST00000148708 ENSMUSP00000120680 TRANSLATION protein_coding stop - 3 106.0 0.0 1.0 0.0 97.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000046550 Spin2c ENSMUST00000123264 ENSMUSP00000115368 TRANSLATION protein_coding stop - 2 110.0 0.0 1.0 0.0 97.3 0.0 -4,-5 0.0 1 -2.0 MINOR ENSMUSG00000046550 Spin2c ENSMUST00000049999 ENSMUSP00000059499 TRANSLATION protein_coding - CCDS30485.1 1 257.0 0.0 2.0 15.6 253.6 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000048573 Cypt3 ENSMUST00000249077 ENSMUSP00000159565 TRANSLATION protein_coding - - - 112.0 0.0 0.64 0.0 0.0 0.0 -4,-2 0.0965 - 6.0 ALTERNATIVE:2 ENSMUSG00000048573 Cypt3 ENSMUST00000056754 ENSMUSP00000057687 TRANSLATION protein_coding - CCDS30483.1 1 171.0 0.0 0.64 0.0 0.0 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000048573 Cypt3 ENSMUST00000112573 ENSMUSP00000108192 TRANSLATION protein_coding - CCDS81188.1 1 174.0 0.0 0.64 0.0 0.0 0.0 -4,-2 0.5451 - 6.0 ALTERNATIVE:2 ENSMUSG00000023092 Fhl1 ENSMUST00000114769 ENSMUSP00000110417 TRANSLATION protein_coding - CCDS40981.1 1 323.0 30.0 5.235 9.1 140.8 0.0 -4,-5 0.212 15 9.676 MINOR ENSMUSG00000023092 Fhl1 ENSMUST00000114768 ENSMUSP00000110416 TRANSLATION protein_coding - - 5 210.0 21.0 4.3489 5.2 93.8 0.0 -4,-6 0.0785 13 2.508 MINOR ENSMUSG00000023092 Fhl1 ENSMUST00000114772 ENSMUSP00000110420 TRANSLATION protein_coding - CCDS40980.1 1 296.0 36.0 6.7739 27.9 181.6 0.0 -4,-6 1.0 18 22.0 PRINCIPAL:1 ENSMUSG00000023092 Fhl1 ENSMUST00000114773 ENSMUSP00000110421 TRANSLATION protein_coding - - 5 309.0 36.0 6.665 1.0 181.6 0.0 0,-4 0.1602 18 17.784 MINOR ENSMUSG00000023092 Fhl1 ENSMUST00000153401 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000023092 Fhl1 ENSMUST00000023854 ENSMUSP00000023854 TRANSLATION protein_coding - CCDS30148.1 1 280.0 36.0 6.5 19.2 181.6 0.0 -4,-5 0.9067 18 20.162 MINOR ENSMUSG00000023092 Fhl1 ENSMUST00000116596 ENSMUSP00000112295 TRANSLATION protein_coding - CCDS30148.1 5 280.0 36.0 6.5 19.2 181.6 0.0 -4,-5 0.9067 18 20.162 MINOR ENSMUSG00000023092 Fhl1 ENSMUST00000151033 ENSMUSP00000119828 TRANSLATION protein_coding stop - 3 89.0 11.0 2.25 0.0 47.9 0.0 -4,-5 0.0 8 -2.0 MINOR ENSMUSG00000023092 Fhl1 ENSMUST00000155882 ENSMUSP00000115700 TRANSLATION protein_coding stop - 3 72.0 10.0 1.75 0.0 28.5 0.0 -4,-5 0.0 6 -2.0 MINOR ENSMUSG00000023092 Fhl1 ENSMUST00000144600 ENSMUSP00000116725 TRANSLATION protein_coding stop - 3 234.0 30.0 5.0 0.0 140.8 0.0 -4,-5 0.002 14 -2.0 MINOR ENSMUSG00000064129 Mageb5b ENSMUST00000078469 ENSMUSP00000077562 TRANSLATION protein_coding - CCDS57768.1 1 366.0 0.0 1.0 0.1 25.5 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025268 Maged2 ENSMUST00000112700 ENSMUSP00000108320 TRANSLATION protein_coding - CCDS30466.1 1 616.0 0.0 5.35 0.4 0.0 0.0 -4,-5 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000025268 Maged2 ENSMUST00000112697 ENSMUSP00000108317 TRANSLATION protein_coding - CCDS30466.1 1 616.0 0.0 5.35 0.4 0.0 0.0 -4,-5 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000025268 Maged2 ENSMUST00000129768 ENSMUSP00000115770 TRANSLATION protein_coding stop - 5 194.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0256 4 -2.0 MINOR ENSMUSG00000025268 Maged2 ENSMUST00000124537 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025268 Maged2 ENSMUST00000131241 ENSMUSP00000120903 TRANSLATION protein_coding stop - 2 161.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0213 4 -2.0 MINOR ENSMUSG00000025268 Maged2 ENSMUST00000143843 ENSMUSP00000119088 TRANSLATION protein_coding stop - 3 276.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0414 6 -2.0 MINOR ENSMUSG00000025268 Maged2 ENSMUST00000145342 - NO_TRANSLATION retained_intron ENSMUSG00000025268 Maged2 ENSMUST00000026302 ENSMUSP00000026302 TRANSLATION protein_coding - CCDS30466.1 5 616.0 0.0 5.35 0.4 0.0 0.0 -4,-5 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000025268 Maged2 ENSMUST00000112699 ENSMUSP00000108319 TRANSLATION protein_coding - CCDS30466.1 1 616.0 0.0 5.35 0.4 0.0 0.0 -4,-5 1.0 8 6.0 PRINCIPAL:1 ENSMUSG00000025268 Maged2 ENSMUST00000147152 ENSMUSP00000116332 TRANSLATION protein_coding stop - 5 213.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0357 5 -2.0 MINOR ENSMUSG00000050435 Ube2dnl1 ENSMUST00000059509 ENSMUSP00000060423 TRANSLATION protein_coding - CCDS72424.1 1 155.0 0.0 1.0 0.1 176.5 0.0 -4,-6 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000031059 Ndufb11 ENSMUST00000116621 ENSMUSP00000112320 TRANSLATION protein_coding - CCDS53012.1 1 151.0 0.0 2.5 12.2 154.7 0.0 -3,1 1.0 6 15.0 PRINCIPAL:1 ENSMUSG00000121914 Sts ENSMUST00000249673 ENSMUSP00000159851 TRANSLATION protein_coding stop - - 325.0 5.0 6.15 0.0 337.1 0.0 -,- 0.7715 9 -2.0 PRINCIPAL:1 ENSMUSG00000100194 Tgif2lx2 ENSMUST00000072518 ENSMUSP00000072333 TRANSLATION protein_coding - CCDS53177.1 - 231.0 0.0 0.0 0.0 46.1 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000035150 Eif2s3x ENSMUST00000127963 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000035150 Eif2s3x ENSMUST00000113922 ENSMUSP00000109555 TRANSLATION protein_coding - - 1 344.0 28.0 7.75 0.0 115.4 0.0 -4,-5 0.0044 3 9.81 MINOR ENSMUSG00000035150 Eif2s3x ENSMUST00000050328 ENSMUSP00000059395 TRANSLATION protein_coding - CCDS30277.1 1 472.0 31.0 10.5 34.0 126.9 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000031377 Bmx ENSMUST00000112263 ENSMUSP00000107882 TRANSLATION protein_coding - - 5 651.0 18.0 7.865 3.9 500.1 0.0 -4,-5 0.6843 3 15.0 ALTERNATIVE:2 ENSMUSG00000031377 Bmx ENSMUST00000112265 ENSMUSP00000107884 TRANSLATION protein_coding - CCDS30519.2 1 655.0 18.0 7.865 6.8 500.1 0.0 -4,-5 1.0 3 16.0 PRINCIPAL:2 ENSMUSG00000121527 ENSMUSG00000121527 ENSMUST00000249152 ENSMUSP00000159599 TRANSLATION protein_coding - - - 6688.0 0.0 0.0 0.0 0.0 0.0 -4,-2 0.7532 - 0.0 PRINCIPAL:1 ENSMUSG00000050197 Rhox13 ENSMUST00000152730 ENSMUSP00000117271 TRANSLATION protein_coding - CCDS57754.1 1 232.0 0.0 1.5 0.0 61.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000049047 Armcx3 ENSMUST00000081834 ENSMUSP00000080518 TRANSLATION protein_coding - CCDS30400.1 1 379.0 0.0 0.6 11.0 379.8 1.0 -1,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000049047 Armcx3 ENSMUST00000086880 ENSMUSP00000084093 TRANSLATION protein_coding - CCDS30400.1 2 379.0 0.0 0.6 11.0 379.8 1.0 -1,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000049047 Armcx3 ENSMUST00000086884 ENSMUSP00000084097 TRANSLATION protein_coding - CCDS30400.1 5 379.0 0.0 0.6 11.0 379.8 1.0 -1,-6 1.0 8 15.0 PRINCIPAL:1 ENSMUSG00000048047 Zbtb33 ENSMUST00000131124 ENSMUSP00000118993 TRANSLATION protein_coding stop - 1 617.0 11.0 0.4 0.0 70.8 0.0 -4,-5 0.0536 5 -2.0 MINOR ENSMUSG00000048047 Zbtb33 ENSMUST00000115142 ENSMUSP00000110795 TRANSLATION protein_coding - CCDS30088.1 1 671.0 11.0 0.4 9.6 70.8 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000048047 Zbtb33 ENSMUST00000049740 ENSMUSP00000049983 TRANSLATION protein_coding - CCDS30088.1 1 671.0 11.0 0.4 9.6 70.8 0.0 -4,-5 1.0 6 21.0 PRINCIPAL:1 ENSMUSG00000001924 Uba1 ENSMUST00000001989 ENSMUSP00000001989 TRANSLATION protein_coding - CCDS30044.1 1 1058.0 19.0 22.25 30.2 1060.4 0.0 -4,-7 1.0 36 22.0 PRINCIPAL:1 ENSMUSG00000001924 Uba1 ENSMUST00000136915 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001924 Uba1 ENSMUST00000089217 ENSMUSP00000086626 TRANSLATION protein_coding - CCDS30044.1 1 1058.0 19.0 22.25 30.2 1060.4 0.0 -4,-7 1.0 36 22.0 PRINCIPAL:1 ENSMUSG00000001924 Uba1 ENSMUST00000137892 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001924 Uba1 ENSMUST00000152235 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000001924 Uba1 ENSMUST00000130694 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000079536 Ctag2l1 ENSMUST00000114125 ENSMUSP00000109760 TRANSLATION protein_coding stop CCDS85785.1 5 208.0 0.0 2.0 0.4 49.2 0.0 -4,-5 1.0 - -2.0 PRINCIPAL:1 ENSMUSG00000054850 Smim10l2a ENSMUST00000068106 ENSMUSP00000066705 TRANSLATION protein_coding - - 1 78.0 0.0 0.0 0.4 131.2 0.0 1,1 0.7313 - 6.0 PRINCIPAL:1 ENSMUSG00000082639 Gm2012 ENSMUST00000121900 ENSMUSP00000113154 TRANSLATION protein_coding - CCDS53024.1 5 212.0 0.0 2.5 0.0 39.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000082639 Gm2012 ENSMUST00000163263 ENSMUSP00000131886 TRANSLATION protein_coding - CCDS53024.1 5 212.0 0.0 2.5 0.0 39.6 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000016382 Pls3 ENSMUST00000114057 ENSMUSP00000109691 TRANSLATION protein_coding - CCDS30243.1 1 630.0 13.0 13.85 16.0 338.3 0.0 -4,-5 1.0 25 21.736 PRINCIPAL:1 ENSMUSG00000016382 Pls3 ENSMUST00000126599 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000016382 Pls3 ENSMUST00000114059 ENSMUSP00000109693 TRANSLATION protein_coding - CCDS30243.1 1 630.0 13.0 13.85 16.0 338.3 0.0 -4,-5 1.0 25 21.736 PRINCIPAL:1 ENSMUSG00000016382 Pls3 ENSMUST00000033547 ENSMUSP00000033547 TRANSLATION protein_coding - CCDS30243.1 1 630.0 13.0 13.85 16.0 338.3 0.0 -4,-5 1.0 25 21.736 PRINCIPAL:1 ENSMUSG00000016382 Pls3 ENSMUST00000137192 ENSMUSP00000118995 TRANSLATION protein_coding stop - 5 629.0 13.0 13.85 16.0 338.3 0.0 -4,-5 0.8602 25 -2.0 MINOR ENSMUSG00000016382 Pls3 ENSMUST00000114058 ENSMUSP00000109692 TRANSLATION protein_coding - CCDS85786.1 5 639.0 13.0 13.982 13.0 328.3 0.0 -4,-5 0.9305 25 20.6 MINOR ENSMUSG00000093923 Gm5935 ENSMUST00000178986 ENSMUSP00000136892 TRANSLATION protein_coding - CCDS53022.1 5 212.0 0.0 2.5 0.0 38.7 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000093923 Gm5935 ENSMUST00000101667 ENSMUSP00000099190 TRANSLATION protein_coding - CCDS53022.1 1 212.0 0.0 2.5 0.0 38.7 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000025531 Chm ENSMUST00000113388 ENSMUSP00000109015 TRANSLATION protein_coding - - 1 623.0 0.0 9.25 0.0 145.7 0.0 -4,-5 0.0017 10 7.398 MINOR ENSMUSG00000025531 Chm ENSMUST00000026607 ENSMUSP00000026607 TRANSLATION protein_coding - CCDS41107.1 1 662.0 0.0 10.25 0.0 189.1 0.0 -4,-5 1.0 11 12.0 PRINCIPAL:1 ENSMUSG00000025531 Chm ENSMUST00000153417 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025531 Chm ENSMUST00000135821 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000025531 Chm ENSMUST00000133469 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031010 Usp9x ENSMUST00000124097 - NO_TRANSLATION retained_intron ENSMUSG00000031010 Usp9x ENSMUST00000169594 ENSMUSP00000129373 TRANSLATION protein_coding stop - 1 755.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0086 16 -2.0 MINOR ENSMUSG00000031010 Usp9x ENSMUST00000133997 ENSMUSP00000134612 TRANSLATION protein_coding start - 5 345.0 0.0 0.0 0.0 0.0 0.0 -4,-1 0.0011 4 -2.0 MINOR ENSMUSG00000031010 Usp9x ENSMUST00000174762 - NO_TRANSLATION retained_intron ENSMUSG00000031010 Usp9x ENSMUST00000139764 - NO_TRANSLATION retained_intron ENSMUSG00000031010 Usp9x ENSMUST00000149021 ENSMUSP00000133948 TRANSLATION protein_coding start/stop - 3 174.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000031010 Usp9x ENSMUST00000089302 ENSMUSP00000086716 TRANSLATION protein_coding - CCDS40875.1 1 2554.0 4.0 3.562 23.2 168.6 0.0 -4,-5 1.0 43 20.0 PRINCIPAL:1 ENSMUSG00000081218 Gm4297 ENSMUST00000119285 ENSMUSP00000112514 TRANSLATION protein_coding - CCDS53021.1 5 211.0 0.0 2.8 0.0 37.5 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000101500 Btbd35f12 ENSMUST00000178827 ENSMUSP00000137368 TRANSLATION protein_coding - CCDS57744.1 - 498.0 0.0 0.8 5.4 36.7 0.0 -4,-7 1.0 - 14.0 PRINCIPAL:1 ENSMUSG00000036916 Zfp280c ENSMUST00000076635 ENSMUSP00000075933 TRANSLATION protein_coding - CCDS30111.1 1 742.0 35.0 2.98 0.0 195.9 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:2 ENSMUSG00000036916 Zfp280c ENSMUST00000149058 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036916 Zfp280c ENSMUST00000150501 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000036916 Zfp280c ENSMUST00000088898 ENSMUSP00000086288 TRANSLATION protein_coding - CCDS30111.1 1 742.0 35.0 2.98 0.0 195.9 0.0 -4,-5 1.0 7 14.0 PRINCIPAL:2 ENSMUSG00000036916 Zfp280c ENSMUST00000114940 ENSMUSP00000110590 TRANSLATION protein_coding - CCDS53065.1 1 693.0 35.0 2.98 0.0 195.9 0.0 -4,-5 0.2357 5 14.0 ALTERNATIVE:2 ENSMUSG00000036916 Zfp280c ENSMUST00000072292 ENSMUSP00000072138 TRANSLATION protein_coding - CCDS53064.1 1 733.0 35.0 2.98 0.1 195.9 0.0 -4,-5 0.451 7 14.0 ALTERNATIVE:2 ENSMUSG00000036916 Zfp280c ENSMUST00000143028 - NO_TRANSLATION retained_intron ENSMUSG00000031390 Avpr2 ENSMUST00000131088 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000031390 Avpr2 ENSMUST00000033765 ENSMUSP00000033765 TRANSLATION protein_coding - CCDS30216.1 1 371.0 0.0 3.264 8.9 160.8 9.0 -3,-6 1.0 - 15.0 PRINCIPAL:1 ENSMUSG00000031390 Avpr2 ENSMUST00000114395 ENSMUSP00000110037 TRANSLATION protein_coding - CCDS72397.1 1 160.0 0.0 2.664 0.0 57.8 3.0 -3,-6 0.0108 - 4.8 MINOR ENSMUSG00000031390 Avpr2 ENSMUST00000101470 ENSMUSP00000099011 TRANSLATION protein_coding - CCDS72396.1 1 334.0 0.0 1.838 0.3 108.5 6.0 -4,-7 0.0174 - 6.012 MINOR ENSMUSG00000071719 Nalf2 ENSMUST00000096363 ENSMUSP00000094090 TRANSLATION protein_coding - CCDS41072.1 5 471.0 0.0 1.16 6.2 0.0 0.0 -4,-6 1.0 - 8.0 PRINCIPAL:1 ENSMUSG00000036790 Slitrk2 ENSMUST00000166241 ENSMUSP00000130057 TRANSLATION protein_coding - CCDS30169.1 2 846.0 0.0 0.5 15.8 116.3 1.0 0,-3 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000036790 Slitrk2 ENSMUST00000036043 ENSMUSP00000044094 TRANSLATION protein_coding - CCDS30169.1 1 846.0 0.0 0.5 15.8 116.3 1.0 0,-3 1.0 7 16.0 PRINCIPAL:1 ENSMUSG00000031224 Magee2 ENSMUST00000033575 ENSMUSP00000033575 TRANSLATION protein_coding - CCDS30333.1 - 523.0 0.0 0.2 8.3 0.0 0.0 -4,-6 1.0 4 9.0 PRINCIPAL:1 ENSMUSG00000043453 Magea10 ENSMUST00000088481 ENSMUSP00000085832 TRANSLATION protein_coding - CCDS41002.1 1 325.0 0.0 1.0 0.3 0.0 0.0 -4,-2 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000101471 Gm29276 ENSMUST00000190453 ENSMUSP00000139523 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 75.4 0.0 -4,-7 0.7351 - 12.0 PRINCIPAL:1 ENSMUSG00000056673 Kdm5d ENSMUST00000189955 - NO_TRANSLATION retained_intron ENSMUSG00000056673 Kdm5d ENSMUST00000188910 - NO_TRANSLATION retained_intron ENSMUSG00000056673 Kdm5d ENSMUST00000189069 ENSMUSP00000139636 TRANSLATION protein_coding - - 1 476.0 9.0 7.15 0.0 173.8 0.0 -4,-5 0.0 - 0.0 MINOR ENSMUSG00000056673 Kdm5d ENSMUST00000186696 ENSMUSP00000140663 TRANSLATION nonsense_mediated_decay - - 5 691.0 19.0 11.15 0.0 322.7 0.0 -4,-5 0.0014 - -2.0 MINOR ENSMUSG00000056673 Kdm5d ENSMUST00000186726 ENSMUSP00000140462 TRANSLATION nonsense_mediated_decay - - 1 271.0 0.0 4.15 0.0 127.7 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000056673 Kdm5d ENSMUST00000055032 ENSMUSP00000061095 TRANSLATION protein_coding - CCDS30541.1 1 1548.0 19.0 12.95 0.1 670.7 0.0 -4,-5 1.0 1 18.0 PRINCIPAL:1 ENSMUSG00000056673 Kdm5d ENSMUST00000185542 - NO_TRANSLATION retained_intron ENSMUSG00000056673 Kdm5d ENSMUST00000189626 - NO_TRANSLATION retained_intron ENSMUSG00000056673 Kdm5d ENSMUST00000187296 - NO_TRANSLATION retained_intron ENSMUSG00000096223 Gm21874 ENSMUST00000190315 ENSMUSP00000139963 TRANSLATION protein_coding - - 5 232.0 0.0 1.0 0.0 211.9 0.0 -4,-1 0.8008 - 12.0 PRINCIPAL:1 ENSMUSG00000101915 Gm28102 ENSMUST00000187146 ENSMUSP00000140242 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.1 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000101915 Gm28102 ENSMUST00000249296 ENSMUSP00000159672 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.1 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000121556 ENSMUSG00000121556 ENSMUST00000249207 ENSMUSP00000159608 TRANSLATION protein_coding - - - 4646.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.7495 - 0.0 PRINCIPAL:1 ENSMUSG00000100608 Gm21996 ENSMUST00000188269 ENSMUSP00000141173 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 76.0 0.0 -4,-7 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000100608 Gm21996 ENSMUST00000249295 ENSMUSP00000159671 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 76.0 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000069053 Uba1y ENSMUST00000115894 ENSMUSP00000111560 TRANSLATION protein_coding - CCDS30540.1 5 1058.0 19.0 21.9 27.2 1017.7 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000069053 Uba1y ENSMUST00000190013 ENSMUSP00000140543 TRANSLATION protein_coding - CCDS30540.1 1 1058.0 19.0 21.9 27.2 1017.7 0.0 -4,-7 1.0 2 22.0 PRINCIPAL:1 ENSMUSG00000100338 Gm28870 ENSMUST00000187033 ENSMUSP00000141382 TRANSLATION protein_coding - - 5 222.0 0.0 4.33 0.0 85.1 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000100338 Gm28870 ENSMUST00000249299 ENSMUSP00000159674 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.1 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000101933 Gm20835 ENSMUST00000185565 ENSMUSP00000140944 TRANSLATION protein_coding - - 5 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000101933 Gm20835 ENSMUST00000249280 ENSMUSP00000159656 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095452 Gm20795 ENSMUST00000178528 ENSMUSP00000136073 TRANSLATION protein_coding - - - 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000095452 Gm20795 ENSMUST00000190909 ENSMUSP00000139666 TRANSLATION protein_coding - - 1 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000104267 Gm20807 ENSMUST00000194687 ENSMUSP00000142185 TRANSLATION protein_coding - - 5 232.0 0.0 1.0 0.0 226.3 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000095135 Gm21858 ENSMUST00000249289 ENSMUSP00000159665 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095135 Gm21858 ENSMUST00000185713 ENSMUSP00000140010 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000094575 Gm20738 ENSMUST00000177666 ENSMUSP00000136636 TRANSLATION protein_coding - CCDS85877.1 1 227.0 0.0 1.0 0.1 191.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094647 Gm21650 ENSMUST00000179073 ENSMUSP00000137112 TRANSLATION protein_coding - - 5 188.0 0.0 3.83 0.0 86.2 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000094647 Gm21650 ENSMUST00000190551 ENSMUSP00000141092 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 86.2 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000100892 Gm20897 ENSMUST00000185240 ENSMUSP00000140689 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000099531 Gm20869 ENSMUST00000188958 ENSMUSP00000139478 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000093993 Gm20736 ENSMUST00000190282 ENSMUSP00000139870 TRANSLATION protein_coding - CCDS57888.1 1 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.1154 - 4.998 ALTERNATIVE:2 ENSMUSG00000093993 Gm20736 ENSMUST00000185550 ENSMUSP00000140139 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000093993 Gm20736 ENSMUST00000178198 ENSMUSP00000136973 TRANSLATION protein_coding - CCDS57888.1 5 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.1154 - 4.998 ALTERNATIVE:2 ENSMUSG00000096122 Gm21943 ENSMUST00000178181 ENSMUSP00000136356 TRANSLATION protein_coding - CCDS85887.1 1 227.0 0.0 1.0 0.1 197.7 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096706 Gm21854 ENSMUST00000190391 ENSMUSP00000139409 TRANSLATION protein_coding - - 5 232.0 0.0 1.0 0.0 197.4 0.0 -4,-1 0.8 - 12.0 PRINCIPAL:1 ENSMUSG00000095242 Gm20834 ENSMUST00000185576 ENSMUSP00000140814 TRANSLATION protein_coding - - 5 227.0 0.0 0.8 0.0 184.7 0.0 -4,-6 0.7861 - 12.0 PRINCIPAL:1 ENSMUSG00000095242 Gm20834 ENSMUST00000179558 ENSMUSP00000136150 TRANSLATION protein_coding - - - 227.0 0.0 0.8 0.0 184.7 0.0 -4,-6 0.7861 - 12.0 PRINCIPAL:1 ENSMUSG00000094052 Gm21118 ENSMUST00000187418 ENSMUSP00000140466 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 204.2 0.0 -4,-2 0.7991 - 12.0 PRINCIPAL:1 ENSMUSG00000094052 Gm21118 ENSMUST00000180179 ENSMUSP00000137343 TRANSLATION protein_coding - - - 227.0 0.0 1.0 0.1 204.2 0.0 -4,-2 0.7991 - 12.0 PRINCIPAL:1 ENSMUSG00000095011 Gm20838 ENSMUST00000187712 ENSMUSP00000140626 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 75.6 0.0 -4,-7 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000095011 Gm20838 ENSMUST00000249302 ENSMUSP00000159677 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 75.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095263 Gm21094 ENSMUST00000189577 ENSMUSP00000141113 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 75.0 0.0 -4,-7 0.7351 - 12.0 PRINCIPAL:1 ENSMUSG00000095650 Gm20854 ENSMUST00000178889 ENSMUSP00000136905 TRANSLATION protein_coding - CCDS85913.1 - 227.0 0.0 1.0 0.1 199.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095650 Gm20854 ENSMUST00000181549 ENSMUSP00000138074 TRANSLATION protein_coding - CCDS85913.1 5 227.0 0.0 1.0 0.1 199.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000099861 Gm29049 ENSMUST00000185705 ENSMUSP00000141109 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 191.0 0.0 -4,-2 0.7983 - 12.0 PRINCIPAL:1 ENSMUSG00000068457 Uty ENSMUST00000137048 ENSMUSP00000119406 TRANSLATION protein_coding stop - 1 646.0 0.0 3.4625 0.0 19.7 0.0 -4,-5 0.0 3 -2.0 MINOR ENSMUSG00000068457 Uty ENSMUST00000139365 ENSMUSP00000114752 TRANSLATION protein_coding - CCDS85834.1 1 1211.0 8.0 12.39 0.0 124.5 0.0 -4,-5 0.5997 4 14.0 ALTERNATIVE:2 ENSMUSG00000068457 Uty ENSMUST00000150715 ENSMUSP00000116372 TRANSLATION nonsense_mediated_decay start - 3 100.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068457 Uty ENSMUST00000154527 - NO_TRANSLATION retained_intron ENSMUSG00000068457 Uty ENSMUST00000069309 ENSMUSP00000070012 TRANSLATION protein_coding - CCDS41216.1 1 1212.0 8.0 12.39 0.0 124.5 0.0 -4,-5 0.5997 4 14.0 ALTERNATIVE:2 ENSMUSG00000068457 Uty ENSMUST00000143958 ENSMUSP00000120069 TRANSLATION nonsense_mediated_decay - - 5 78.0 0.0 0.2 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068457 Uty ENSMUST00000157073 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000068457 Uty ENSMUST00000185837 - NO_TRANSLATION retained_intron ENSMUSG00000068457 Uty ENSMUST00000154004 ENSMUSP00000114910 TRANSLATION protein_coding - CCDS85833.1 1 1149.0 8.0 12.19 0.0 124.5 0.0 -4,-6 0.523 4 13.598 ALTERNATIVE:2 ENSMUSG00000068457 Uty ENSMUST00000133976 - NO_TRANSLATION retained_intron ENSMUSG00000068457 Uty ENSMUST00000154666 ENSMUSP00000122818 TRANSLATION nonsense_mediated_decay - - 1 144.0 0.0 0.45 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000068457 Uty ENSMUST00000143286 ENSMUSP00000115113 TRANSLATION protein_coding - - 1 1111.0 8.0 12.39 0.0 124.5 0.0 -4,-5 0.9443 3 14.0 PRINCIPAL:2 ENSMUSG00000096016 Gm20937 ENSMUST00000180329 ENSMUSP00000136591 TRANSLATION protein_coding - - 5 188.0 0.0 3.83 0.0 86.2 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000096016 Gm20937 ENSMUST00000189084 ENSMUSP00000139975 TRANSLATION protein_coding - - 1 188.0 0.0 3.83 0.0 86.2 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000096016 Gm20937 ENSMUST00000189422 ENSMUSP00000140064 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 86.2 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000079806 Gm21719 ENSMUST00000189073 ENSMUSP00000139615 TRANSLATION protein_coding - - 5 230.0 0.0 1.0 0.0 184.5 0.0 -4,-1 0.8 - 12.0 PRINCIPAL:1 ENSMUSG00000101928 Gm20824 ENSMUST00000186739 ENSMUSP00000140952 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 81.7 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000101399 Gm28961 ENSMUST00000190573 ENSMUSP00000139697 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 84.5 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000095520 Gm20877 ENSMUST00000100105 ENSMUSP00000097682 TRANSLATION protein_coding - CCDS85864.1 5 227.0 0.0 0.8 0.1 186.5 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095520 Gm20877 ENSMUST00000191358 ENSMUSP00000139965 TRANSLATION protein_coding - CCDS85864.1 1 227.0 0.0 0.8 0.1 186.5 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000102045 Gm21294 ENSMUST00000186443 ENSMUSP00000140933 TRANSLATION protein_coding - - 5 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000094570 Gm20931 ENSMUST00000187293 ENSMUSP00000140468 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000095508 Gm20812 ENSMUST00000179220 ENSMUSP00000137553 TRANSLATION protein_coding - - - 227.0 0.0 0.8 0.1 186.5 0.0 -4,-7 0.7898 - 12.0 PRINCIPAL:1 ENSMUSG00000095508 Gm20812 ENSMUST00000189550 ENSMUSP00000139838 TRANSLATION protein_coding - - 1 227.0 0.0 0.8 0.1 186.5 0.0 -4,-7 0.7898 - 12.0 PRINCIPAL:1 ENSMUSG00000095979 Gm21209 ENSMUST00000189354 ENSMUSP00000139400 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 86.2 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000095979 Gm21209 ENSMUST00000178556 ENSMUSP00000136754 TRANSLATION protein_coding - - 5 188.0 0.0 3.83 0.0 86.2 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000102668 Gm29866 ENSMUST00000249310 ENSMUSP00000159685 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000102668 Gm29866 ENSMUST00000191675 ENSMUSP00000141776 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000099894 Gm20911 ENSMUST00000249281 ENSMUSP00000159657 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.1 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000099894 Gm20911 ENSMUST00000187135 ENSMUSP00000141161 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.1 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000094729 Gm20747 ENSMUST00000179137 ENSMUSP00000136937 TRANSLATION protein_coding - CCDS85884.1 - 227.0 0.0 1.0 0.1 201.3 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094729 Gm20747 ENSMUST00000187856 ENSMUSP00000139491 TRANSLATION protein_coding - CCDS85884.1 1 227.0 0.0 1.0 0.1 201.3 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000069044 Usp9y ENSMUST00000091188 ENSMUSP00000088727 TRANSLATION protein_coding - CCDS30544.1 1 2556.0 4.0 3.23 0.1 162.5 0.0 -4,-5 1.0 1 16.0 PRINCIPAL:1 ENSMUSG00000093927 Gm20918 ENSMUST00000188637 ENSMUSP00000140003 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 188.1 0.0 -4,-2 0.7983 - 12.0 PRINCIPAL:1 ENSMUSG00000093927 Gm20918 ENSMUST00000179629 ENSMUSP00000136554 TRANSLATION protein_coding - - - 227.0 0.0 1.0 0.1 188.1 0.0 -4,-2 0.7983 - 12.0 PRINCIPAL:1 ENSMUSG00000095302 Ssty2 ENSMUST00000179136 ENSMUSP00000137417 TRANSLATION protein_coding - CCDS85893.1 - 227.0 0.0 1.0 0.1 204.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095302 Ssty2 ENSMUST00000190565 ENSMUSP00000139505 TRANSLATION protein_coding - CCDS85893.1 1 227.0 0.0 1.0 0.1 204.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094081 Gm20826 ENSMUST00000185348 ENSMUSP00000140488 TRANSLATION protein_coding - CCDS85848.1 5 227.0 0.0 1.0 0.0 198.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094081 Gm20826 ENSMUST00000179256 ENSMUSP00000137147 TRANSLATION protein_coding - CCDS85848.1 - 227.0 0.0 1.0 0.0 198.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000100972 Gm28553 ENSMUST00000249287 ENSMUSP00000159663 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000100972 Gm28553 ENSMUST00000185924 ENSMUSP00000139793 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000095032 Gm21310 ENSMUST00000189630 ENSMUSP00000139580 TRANSLATION protein_coding - - 1 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000095032 Gm21310 ENSMUST00000180130 ENSMUSP00000137593 TRANSLATION protein_coding - - - 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000094511 Gm21693 ENSMUST00000178531 ENSMUSP00000136819 TRANSLATION protein_coding - CCDS85839.1 5 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094511 Gm21693 ENSMUST00000186047 ENSMUSP00000139784 TRANSLATION protein_coding - CCDS85839.1 1 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000093903 Gm21454 ENSMUST00000178599 ENSMUSP00000136379 TRANSLATION protein_coding - - 5 232.0 0.0 1.0 0.0 219.0 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000093903 Gm21454 ENSMUST00000192204 ENSMUSP00000141810 TRANSLATION protein_coding - - 1 232.0 0.0 1.0 0.0 219.0 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000100467 Gm29582 ENSMUST00000185667 ENSMUSP00000139915 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 77.1 0.0 -4,-7 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000100467 Gm29582 ENSMUST00000249298 ENSMUSP00000159673 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 77.1 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000094821 Gm21518 ENSMUST00000186938 ENSMUSP00000140794 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 86.2 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000094821 Gm21518 ENSMUST00000178115 ENSMUSP00000136187 TRANSLATION protein_coding - - 5 188.0 0.0 3.83 0.0 86.2 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000094881 H2al2c ENSMUST00000163651 ENSMUSP00000126567 TRANSLATION protein_coding - CCDS53250.1 - 111.0 0.0 1.0 0.7 21.7 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000101158 Gm20894 ENSMUST00000249278 ENSMUSP00000159654 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000101158 Gm20894 ENSMUST00000188864 ENSMUSP00000141039 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000094325 Gm20831 ENSMUST00000177639 ENSMUSP00000136638 TRANSLATION protein_coding - CCDS85866.1 5 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094325 Gm20831 ENSMUST00000194411 ENSMUSP00000142081 TRANSLATION protein_coding - CCDS85866.1 1 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000093918 Gm21677 ENSMUST00000179508 ENSMUSP00000136939 TRANSLATION protein_coding - CCDS85838.1 5 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000093918 Gm21677 ENSMUST00000189592 ENSMUSP00000139527 TRANSLATION protein_coding - CCDS85838.1 5 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095365 Rbm31y ENSMUST00000179408 ENSMUSP00000136781 TRANSLATION protein_coding - CCDS57813.1 - 565.0 0.0 0.0 0.1 89.9 0.0 -4,-5 1.0 - 6.0 PRINCIPAL:1 ENSMUSG00000093987 Gm21704 ENSMUST00000169382 ENSMUSP00000129249 TRANSLATION protein_coding - CCDS85840.1 5 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000093987 Gm21704 ENSMUST00000187277 ENSMUSP00000140704 TRANSLATION protein_coding - CCDS85840.1 1 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094616 Gm20888 ENSMUST00000186890 ENSMUSP00000140067 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.6 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000095172 Gm20822 ENSMUST00000165756 ENSMUSP00000130886 TRANSLATION protein_coding - CCDS85863.1 - 228.0 0.0 0.8 0.1 187.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095172 Gm20822 ENSMUST00000188422 ENSMUSP00000139707 TRANSLATION protein_coding - CCDS85863.1 1 228.0 0.0 0.8 0.1 187.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000099782 Gm20903 ENSMUST00000189346 ENSMUSP00000141119 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000000103 Zfy2 ENSMUST00000115891 ENSMUSP00000111557 TRANSLATION protein_coding - CCDS41217.1 1 777.0 43.0 0.5 0.1 495.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000000103 Zfy2 ENSMUST00000187148 ENSMUSP00000139591 TRANSLATION protein_coding - CCDS41217.1 1 777.0 43.0 0.5 0.1 495.5 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000099792 Gm29564 ENSMUST00000249306 ENSMUSP00000159681 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000099792 Gm29564 ENSMUST00000185575 ENSMUSP00000139621 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000093848 Gm20865 ENSMUST00000179095 ENSMUSP00000136326 TRANSLATION protein_coding - CCDS85869.1 - 227.0 0.0 1.0 0.1 196.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000093848 Gm20865 ENSMUST00000181163 ENSMUSP00000138020 TRANSLATION protein_coding - CCDS85869.1 1 227.0 0.0 1.0 0.1 196.3 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000099856 Gm20906 ENSMUST00000186493 ENSMUSP00000140305 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000096650 Gm20896 ENSMUST00000188585 ENSMUSP00000139596 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000094660 Gm21394 ENSMUST00000189463 ENSMUSP00000141090 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 198.7 0.0 -4,-2 0.7983 - 12.0 PRINCIPAL:1 ENSMUSG00000094660 Gm21394 ENSMUST00000179523 ENSMUSP00000136571 TRANSLATION protein_coding - - - 227.0 0.0 1.0 0.1 198.7 0.0 -4,-2 0.7983 - 12.0 PRINCIPAL:1 ENSMUSG00000100231 Gm29554 ENSMUST00000187922 ENSMUSP00000139522 TRANSLATION protein_coding - - 5 188.0 0.0 3.83 0.0 83.5 0.0 -4,-7 0.7346 - 12.0 PRINCIPAL:1 ENSMUSG00000100231 Gm29554 ENSMUST00000249272 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101157 Gm20905 ENSMUST00000190782 ENSMUSP00000140730 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000100485 Gm20920 ENSMUST00000187477 ENSMUSP00000140677 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000100485 Gm20920 ENSMUST00000249277 ENSMUSP00000159653 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095153 Gm21095 ENSMUST00000185776 ENSMUSP00000140431 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.7 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000095153 Gm21095 ENSMUST00000249282 ENSMUSP00000159658 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.7 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095867 Gm20917 ENSMUST00000179922 ENSMUSP00000137546 TRANSLATION protein_coding - CCDS85906.1 - 227.0 0.0 1.0 0.1 203.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095867 Gm20917 ENSMUST00000188706 ENSMUSP00000140501 TRANSLATION protein_coding - CCDS85906.1 1 227.0 0.0 1.0 0.1 203.1 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000101667 Gm29289 ENSMUST00000188358 ENSMUSP00000139969 TRANSLATION protein_coding stop - 5 166.0 0.0 2.6 0.0 67.9 0.0 -4,-5 0.7361 - -2.0 PRINCIPAL:1 ENSMUSG00000069049 Eif2s3y ENSMUST00000137006 - NO_TRANSLATION retained_intron ENSMUSG00000069049 Eif2s3y ENSMUST00000139083 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000069049 Eif2s3y ENSMUST00000134820 - NO_TRANSLATION retained_intron ENSMUSG00000069049 Eif2s3y ENSMUST00000154556 - NO_TRANSLATION retained_intron ENSMUSG00000069049 Eif2s3y ENSMUST00000148961 - NO_TRANSLATION retained_intron ENSMUSG00000069049 Eif2s3y ENSMUST00000091197 ENSMUSP00000088736 TRANSLATION protein_coding - CCDS30542.1 1 472.0 31.0 10.5 34.0 124.6 0.0 -4,-5 1.0 1 22.0 PRINCIPAL:1 ENSMUSG00000104191 Gm30737 ENSMUST00000249294 ENSMUSP00000159670 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 83.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000104191 Gm30737 ENSMUST00000192683 ENSMUSP00000141356 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 83.6 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000094658 Rbmy ENSMUST00000171534 ENSMUSP00000130080 TRANSLATION protein_coding - CCDS30546.1 1 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094658 Rbmy ENSMUST00000100360 ENSMUSP00000097930 TRANSLATION protein_coding - CCDS30546.1 1 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095785 Gm20924 ENSMUST00000186910 ENSMUSP00000139614 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 191.8 0.0 -4,-2 0.7983 - 12.0 PRINCIPAL:1 ENSMUSG00000095785 Gm20924 ENSMUST00000177663 ENSMUSP00000137639 TRANSLATION protein_coding - - - 227.0 0.0 1.0 0.1 191.8 0.0 -4,-2 0.7983 - 12.0 PRINCIPAL:1 ENSMUSG00000100634 Gm28171 ENSMUST00000190100 ENSMUSP00000140005 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 184.8 0.0 -4,-2 0.7983 - 12.0 PRINCIPAL:1 ENSMUSG00000096520 Gm3376 ENSMUST00000186140 ENSMUSP00000141183 TRANSLATION protein_coding - CCDS85842.1 1 380.0 0.0 2.6 0.0 67.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096520 Gm3376 ENSMUST00000180202 ENSMUSP00000136808 TRANSLATION protein_coding - CCDS85842.1 5 380.0 0.0 2.6 0.0 67.2 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094838 Gm20828 ENSMUST00000170889 ENSMUSP00000129237 TRANSLATION protein_coding - - - 228.0 0.0 0.8 0.1 187.2 0.0 -4,-2 0.8001 - 12.0 PRINCIPAL:1 ENSMUSG00000094838 Gm20828 ENSMUST00000190516 ENSMUSP00000139764 TRANSLATION protein_coding - - 1 228.0 0.0 0.8 0.1 187.2 0.0 -4,-2 0.8001 - 12.0 PRINCIPAL:1 ENSMUSG00000096820 Gm21425 ENSMUST00000195626 ENSMUSP00000141545 TRANSLATION protein_coding - - 5 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000094813 Gm20777 ENSMUST00000187434 ENSMUSP00000140872 TRANSLATION protein_coding - - 5 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000103528 Gm31571 ENSMUST00000249309 ENSMUSP00000159684 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000103528 Gm31571 ENSMUST00000192521 ENSMUSP00000141784 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000094294 Gm20909 ENSMUST00000181205 ENSMUSP00000137876 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 201.3 0.0 -4,-2 0.7968 - 12.0 PRINCIPAL:1 ENSMUSG00000094294 Gm20909 ENSMUST00000178234 ENSMUSP00000137500 TRANSLATION protein_coding - - - 227.0 0.0 1.0 0.1 201.3 0.0 -4,-2 0.7968 - 12.0 PRINCIPAL:1 ENSMUSG00000103371 Gm35134 ENSMUST00000194086 ENSMUSP00000141239 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 83.6 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000103371 Gm35134 ENSMUST00000249293 ENSMUSP00000159669 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 83.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095950 Gm20737 ENSMUST00000187245 ENSMUSP00000139604 TRANSLATION protein_coding - - 5 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000096036 Gm21778 ENSMUST00000185926 ENSMUSP00000139442 TRANSLATION protein_coding - - 5 232.0 0.0 1.0 0.0 216.5 0.0 -4,-1 0.8007 - 12.0 PRINCIPAL:1 ENSMUSG00000100902 Gm20850 ENSMUST00000188672 ENSMUSP00000141004 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000100856 Gm21627 ENSMUST00000187768 ENSMUSP00000140851 TRANSLATION protein_coding - - 1 219.0 0.0 3.83 0.0 85.4 0.0 -4,-6 0.7322 - 12.0 PRINCIPAL:1 ENSMUSG00000100667 1700040F15Rik ENSMUST00000188244 ENSMUSP00000140263 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 75.6 0.0 -4,-7 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000100667 1700040F15Rik ENSMUST00000249290 ENSMUSP00000159666 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 75.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000093895 Gm21865 ENSMUST00000191443 ENSMUSP00000140679 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 83.6 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000093895 Gm21865 ENSMUST00000249292 ENSMUSP00000159668 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 83.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095148 Gm20873 ENSMUST00000187857 ENSMUSP00000140138 TRANSLATION protein_coding - - 1 232.0 0.0 1.0 0.0 216.1 0.0 -4,-1 0.8007 - 12.0 PRINCIPAL:1 ENSMUSG00000095148 Gm20873 ENSMUST00000179410 ENSMUSP00000136403 TRANSLATION protein_coding - - - 232.0 0.0 1.0 0.0 216.1 0.0 -4,-1 0.8007 - 12.0 PRINCIPAL:1 ENSMUSG00000096626 Gm21861 ENSMUST00000190806 ENSMUSP00000139535 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 75.6 0.0 -4,-7 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000096626 Gm21861 ENSMUST00000249304 ENSMUSP00000159679 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 75.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000091077 Gm21292 ENSMUST00000190329 ENSMUSP00000139843 TRANSLATION protein_coding - - 5 227.0 0.0 1.0 0.1 203.2 0.0 -4,-2 0.7991 - 12.0 PRINCIPAL:1 ENSMUSG00000101053 Gm20815 ENSMUST00000115496 ENSMUSP00000111158 TRANSLATION protein_coding - CCDS85850.1 1 227.0 0.0 1.0 0.1 202.9 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000100535 Gm20870 ENSMUST00000189315 ENSMUSP00000139722 TRANSLATION protein_coding - - 5 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000101396 Gm28510 ENSMUST00000190572 ENSMUSP00000139602 TRANSLATION protein_coding - - 1 240.0 0.0 4.25 0.0 92.2 0.0 -4,-7 0.7303 - 12.0 PRINCIPAL:1 ENSMUSG00000102739 Gm20772 ENSMUST00000188928 ENSMUSP00000139540 TRANSLATION protein_coding - - 5 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000091987 Gm10352 ENSMUST00000187842 ENSMUSP00000140575 TRANSLATION protein_coding - CCDS85837.1 1 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000091987 Gm10352 ENSMUST00000166474 ENSMUSP00000129935 TRANSLATION protein_coding - CCDS85837.1 5 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000100240 Gm20820 ENSMUST00000188754 ENSMUSP00000139858 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 84.5 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000053211 Zfy1 ENSMUST00000189888 ENSMUSP00000140600 TRANSLATION protein_coding - CCDS30539.1 1 782.0 47.0 0.665 0.1 473.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000053211 Zfy1 ENSMUST00000065545 ENSMUSP00000069364 TRANSLATION protein_coding - CCDS30539.1 1 782.0 47.0 0.665 0.1 473.1 0.0 -4,-5 1.0 - 18.0 PRINCIPAL:1 ENSMUSG00000095948 Gm21708 ENSMUST00000188091 ENSMUSP00000140216 TRANSLATION protein_coding - CCDS85841.1 1 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095948 Gm21708 ENSMUST00000180310 ENSMUSP00000137266 TRANSLATION protein_coding - CCDS85841.1 5 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095948 Gm21708 ENSMUST00000190283 ENSMUSP00000139659 TRANSLATION protein_coding - CCDS85841.1 1 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000100055 Gm20890 ENSMUST00000189518 ENSMUSP00000140218 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000100055 Gm20890 ENSMUST00000249284 ENSMUSP00000159660 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000094679 Gm21721 ENSMUST00000189253 ENSMUSP00000139987 TRANSLATION protein_coding - - 3 227.0 0.0 1.0 0.1 186.2 0.0 -4,-7 0.7886 - 12.0 PRINCIPAL:1 ENSMUSG00000095793 Gm20855 ENSMUST00000186996 ENSMUSP00000140500 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000095793 Gm20855 ENSMUST00000249274 ENSMUSP00000159650 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095573 H2al2b ENSMUST00000168551 ENSMUSP00000132924 TRANSLATION protein_coding - CCDS53251.1 - 111.0 0.0 1.0 0.7 21.7 0.0 -4,0 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095324 Gm20825 ENSMUST00000178396 ENSMUSP00000136143 TRANSLATION protein_coding - - - 227.0 0.0 1.0 0.1 204.2 0.0 -4,-2 0.7991 - 12.0 PRINCIPAL:1 ENSMUSG00000095324 Gm20825 ENSMUST00000178149 ENSMUSP00000136231 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 204.2 0.0 -4,-2 0.7991 - 12.0 PRINCIPAL:1 ENSMUSG00000069036 Sry ENSMUST00000091178 ENSMUSP00000088717 TRANSLATION protein_coding - CCDS30545.1 - 395.0 0.0 0.2 0.0 87.4 0.0 -4,-7 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094782 Gm21256 ENSMUST00000249301 ENSMUSP00000159676 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 75.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000094782 Gm21256 ENSMUST00000188881 ENSMUSP00000140938 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 75.6 0.0 -4,-7 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000121557 ENSMUSG00000121557 ENSMUST00000249208 ENSMUSP00000159609 TRANSLATION protein_coding - - - 4645.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.7495 - 0.0 PRINCIPAL:1 ENSMUSG00000103468 Gm21440 ENSMUST00000192749 ENSMUSP00000141432 TRANSLATION protein_coding - - 1 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000102053 Gm4064 ENSMUST00000187482 ENSMUSP00000140512 TRANSLATION protein_coding - CCDS85835.1 1 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095578 Gm21760 ENSMUST00000249288 ENSMUSP00000159664 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095578 Gm21760 ENSMUST00000187433 ENSMUSP00000140706 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000101528 Gm29110 ENSMUST00000249308 ENSMUSP00000159683 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000101528 Gm29110 ENSMUST00000189924 ENSMUSP00000140088 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000101146 Gm20814 ENSMUST00000190173 ENSMUSP00000140666 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000100032 Gm20817 ENSMUST00000191123 ENSMUSP00000140565 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000096666 Gm20852 ENSMUST00000188011 ENSMUSP00000140403 TRANSLATION protein_coding - CCDS85892.1 1 227.0 0.0 1.0 0.1 204.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096666 Gm20852 ENSMUST00000178761 ENSMUSP00000135934 TRANSLATION protein_coding - CCDS85892.1 - 227.0 0.0 1.0 0.1 204.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000099948 Gm29424 ENSMUST00000189716 ENSMUSP00000159647 TRANSLATION protein_coding stop - - 232.0 0.0 1.0 0.0 210.6 0.0 -4,-1 0.8008 - -2.0 PRINCIPAL:1 ENSMUSG00000099840 Gm21409 ENSMUST00000249275 ENSMUSP00000159651 TRANSLATION protein_coding - - - 163.0 0.0 3.83 0.0 86.5 0.0 -4,-6 0.0151 - 6.0 ALTERNATIVE:2 ENSMUSG00000099840 Gm21409 ENSMUST00000186110 ENSMUSP00000140850 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 86.5 0.0 -4,-7 0.7347 - 6.0 PRINCIPAL:2 ENSMUSG00000099840 Gm21409 ENSMUST00000249276 ENSMUSP00000159652 TRANSLATION protein_coding - - - 222.0 0.0 3.83 0.0 86.5 0.0 -4,-7 0.7347 - 6.0 PRINCIPAL:2 ENSMUSG00000100939 Gm28998 ENSMUST00000186194 ENSMUSP00000140653 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.1 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000121543 ENSMUSG00000121543 ENSMUST00000249191 ENSMUSP00000159604 TRANSLATION protein_coding - - - 5411.0 0.0 0.0 0.0 0.0 0.0 -4,-7 0.7495 - 0.0 PRINCIPAL:1 ENSMUSG00000100726 Gm21497 ENSMUST00000189455 ENSMUSP00000140668 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000100726 Gm21497 ENSMUST00000249286 ENSMUSP00000159662 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000093950 Gm20823 ENSMUST00000179949 ENSMUSP00000136451 TRANSLATION protein_coding - CCDS85889.1 1 227.0 0.0 1.0 0.1 191.8 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096268 Gm20914 ENSMUST00000180372 ENSMUSP00000136243 TRANSLATION protein_coding - - - 227.0 0.0 1.0 0.1 201.0 0.0 -4,-2 0.7968 - 12.0 PRINCIPAL:1 ENSMUSG00000096268 Gm20914 ENSMUST00000188887 ENSMUSP00000139808 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 201.0 0.0 -4,-2 0.7968 - 12.0 PRINCIPAL:1 ENSMUSG00000101286 Gm21317 ENSMUST00000249279 ENSMUSP00000159655 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000101286 Gm21317 ENSMUST00000185636 ENSMUSP00000140162 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000103919 Gm21366 ENSMUST00000192892 ENSMUSP00000141418 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000094739 Gm20806 ENSMUST00000180324 ENSMUSP00000136000 TRANSLATION protein_coding - CCDS85905.1 - 227.0 0.0 1.0 0.1 204.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094739 Gm20806 ENSMUST00000190349 ENSMUSP00000141047 TRANSLATION protein_coding - CCDS85905.1 1 227.0 0.0 1.0 0.1 204.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095606 Gm21258 ENSMUST00000178673 ENSMUSP00000136718 TRANSLATION protein_coding - - 5 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095606 Gm21258 ENSMUST00000191553 ENSMUSP00000139882 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000101243 Gm28919 ENSMUST00000190026 ENSMUSP00000139611 TRANSLATION protein_coding - - 1 240.0 0.0 4.25 0.0 94.8 0.0 -4,-7 0.7303 - 12.0 PRINCIPAL:1 ENSMUSG00000101155 Sly ENSMUST00000190676 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000101155 Sly ENSMUST00000189109 ENSMUSP00000141149 TRANSLATION protein_coding - - 1 188.0 0.0 3.91 0.0 85.9 0.0 -4,-7 0.0064 - 4.998 ALTERNATIVE:2 ENSMUSG00000101155 Sly ENSMUST00000191355 ENSMUSP00000139451 TRANSLATION protein_coding stop - 5 110.0 0.0 2.75 0.0 76.4 0.0 -4,-5 0.001 - -2.0 MINOR ENSMUSG00000101155 Sly ENSMUST00000190292 ENSMUSP00000140340 TRANSLATION protein_coding - CCDS81234.1 1 222.0 0.0 4.41 0.0 85.9 0.0 -4,-7 1.0 - 6.0 PRINCIPAL:2 ENSMUSG00000094789 Gm28490 ENSMUST00000190946 ENSMUSP00000140770 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 76.5 0.0 -4,-7 0.7351 - 12.0 PRINCIPAL:1 ENSMUSG00000094789 Gm28490 ENSMUST00000249297 - NO_TRANSLATION protein_coding_CDS_not_defined ENSMUSG00000094484 Gm21244 ENSMUST00000189201 ENSMUSP00000139421 TRANSLATION protein_coding - - 5 227.0 0.0 1.0 0.0 198.9 0.0 -4,-7 0.7886 - 12.0 PRINCIPAL:1 ENSMUSG00000094746 Gm20916 ENSMUST00000185338 ENSMUSP00000140607 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000094746 Gm20916 ENSMUST00000249273 ENSMUSP00000159649 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095141 Gm28891 ENSMUST00000249303 ENSMUSP00000159678 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 75.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095141 Gm28891 ENSMUST00000189333 ENSMUSP00000140248 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 75.6 0.0 -4,-7 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000094181 Gm21739 ENSMUST00000188917 ENSMUSP00000140604 TRANSLATION protein_coding - - 5 222.0 0.0 4.33 0.0 75.6 0.0 -4,-7 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000094181 Gm21739 ENSMUST00000249300 ENSMUSP00000159675 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 75.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000101766 Gm20908 ENSMUST00000186004 ENSMUSP00000140733 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000069045 Ddx3y ENSMUST00000188484 ENSMUSP00000140361 TRANSLATION nonsense_mediated_decay - - 1 41.0 0.0 0.0 0.0 0.0 0.0 -4,-5 0.0 - -2.0 MINOR ENSMUSG00000069045 Ddx3y ENSMUST00000187596 - NO_TRANSLATION retained_intron ENSMUSG00000069045 Ddx3y ENSMUST00000188182 - NO_TRANSLATION retained_intron ENSMUSG00000069045 Ddx3y ENSMUST00000091190 ENSMUSP00000088729 TRANSLATION protein_coding - CCDS30543.1 1 658.0 17.0 10.35 1.1 279.1 0.0 -4,-5 1.0 7 19.0 PRINCIPAL:1 ENSMUSG00000096898 Gm20867 ENSMUST00000178900 ENSMUSP00000136459 TRANSLATION protein_coding - CCDS85904.1 - 227.0 0.0 1.0 0.1 196.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096898 Gm20867 ENSMUST00000190987 ENSMUSP00000139713 TRANSLATION protein_coding - CCDS85904.1 1 227.0 0.0 1.0 0.1 196.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095900 Gm20773 ENSMUST00000193306 ENSMUSP00000142165 TRANSLATION protein_coding - - 5 232.0 0.0 1.0 0.0 225.9 0.0 -4,-1 0.8026 - 12.0 PRINCIPAL:1 ENSMUSG00000100645 Gm28576 ENSMUST00000189007 ENSMUSP00000140720 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.1 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000094399 Gm21477 ENSMUST00000189543 ENSMUSP00000140238 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000100045 Gm20929 ENSMUST00000186578 ENSMUSP00000139649 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000096902 Gm20843 ENSMUST00000178505 ENSMUSP00000136575 TRANSLATION protein_coding - - 5 188.0 0.0 3.83 0.0 86.2 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000096902 Gm20843 ENSMUST00000191305 ENSMUSP00000140105 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 86.2 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000094556 Gm20821 ENSMUST00000179829 ENSMUSP00000136629 TRANSLATION protein_coding - - 5 227.0 0.0 1.0 0.1 192.7 0.0 -4,-7 0.7886 - 12.0 PRINCIPAL:1 ENSMUSG00000102122 Gm20883 ENSMUST00000185245 ENSMUSP00000140542 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 85.3 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000096178 Gm20837 ENSMUST00000178446 ENSMUSP00000137363 TRANSLATION protein_coding - - 5 222.0 0.0 4.33 0.0 75.6 0.0 -4,-7 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000096178 Gm20837 ENSMUST00000190558 ENSMUSP00000139688 TRANSLATION protein_coding - - 5 188.0 0.0 3.83 0.0 75.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000093868 Gm20809 ENSMUST00000179663 ENSMUSP00000137177 TRANSLATION protein_coding - CCDS85871.1 - 227.0 0.0 1.0 0.1 196.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000093868 Gm20809 ENSMUST00000187943 ENSMUSP00000140802 TRANSLATION protein_coding - CCDS85871.1 1 227.0 0.0 1.0 0.1 196.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000099925 Gm28827 ENSMUST00000249307 ENSMUSP00000159682 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000099925 Gm28827 ENSMUST00000187165 ENSMUSP00000139992 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000099740 Gm28897 ENSMUST00000249305 ENSMUSP00000159680 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000099740 Gm28897 ENSMUST00000185340 ENSMUSP00000140644 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000095634 Gm20816 ENSMUST00000187846 ENSMUSP00000140326 TRANSLATION protein_coding - CCDS85895.1 1 227.0 0.0 1.0 0.1 196.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095634 Gm20816 ENSMUST00000177765 ENSMUSP00000137306 TRANSLATION protein_coding - CCDS85895.1 - 227.0 0.0 1.0 0.1 196.2 0.0 -4,-2 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000094773 Gm21812 ENSMUST00000188908 ENSMUSP00000140302 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 202.9 0.0 -4,-7 0.7922 - 12.0 PRINCIPAL:1 ENSMUSG00000094773 Gm21812 ENSMUST00000179590 ENSMUSP00000136639 TRANSLATION protein_coding - - - 227.0 0.0 1.0 0.1 202.9 0.0 -4,-7 0.7922 - 12.0 PRINCIPAL:1 ENSMUSG00000096686 Gm20830 ENSMUST00000178016 ENSMUSP00000135925 TRANSLATION protein_coding - - - 227.0 0.0 1.0 0.1 201.1 0.0 -4,-7 0.7886 - 12.0 PRINCIPAL:1 ENSMUSG00000096686 Gm20830 ENSMUST00000190426 ENSMUSP00000141026 TRANSLATION protein_coding - - 1 227.0 0.0 1.0 0.1 201.1 0.0 -4,-7 0.7886 - 12.0 PRINCIPAL:1 ENSMUSG00000095852 Gm10256 ENSMUST00000179404 ENSMUSP00000136632 TRANSLATION protein_coding - CCDS85836.1 5 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095852 Gm10256 ENSMUST00000188114 ENSMUSP00000140936 TRANSLATION protein_coding - CCDS85836.1 1 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095852 Gm10256 ENSMUST00000189964 ENSMUSP00000140037 TRANSLATION protein_coding - CCDS85836.1 1 380.0 0.0 2.6 0.0 65.7 0.0 -4,-5 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000096769 Gm21117 ENSMUST00000185327 ENSMUSP00000139807 TRANSLATION protein_coding - - 1 222.0 0.0 3.83 0.0 83.5 0.0 -4,-7 0.7337 - 12.0 PRINCIPAL:1 ENSMUSG00000100708 Gm21173 ENSMUST00000189238 ENSMUSP00000140477 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000100708 Gm21173 ENSMUST00000249285 ENSMUSP00000159661 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000095267 Ssty1 ENSMUST00000180056 ENSMUSP00000137527 TRANSLATION protein_coding - CCDS85867.1 - 232.0 0.0 1.0 0.0 219.0 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000095267 Ssty1 ENSMUST00000186035 ENSMUSP00000139883 TRANSLATION protein_coding - CCDS85867.1 1 232.0 0.0 1.0 0.0 219.0 0.0 -4,-1 1.0 - 12.0 PRINCIPAL:1 ENSMUSG00000101653 Gm20792 ENSMUST00000249291 ENSMUSP00000159667 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 75.6 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000101653 Gm20792 ENSMUST00000189765 ENSMUSP00000140983 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 75.6 0.0 -4,-7 0.7375 - 6.0 PRINCIPAL:2 ENSMUSG00000099541 Gm21488 ENSMUST00000188744 ENSMUSP00000140532 TRANSLATION protein_coding - - 1 222.0 0.0 4.33 0.0 85.9 0.0 -4,-7 0.7361 - 6.0 PRINCIPAL:2 ENSMUSG00000099541 Gm21488 ENSMUST00000249283 ENSMUSP00000159659 TRANSLATION protein_coding - - - 188.0 0.0 3.83 0.0 85.9 0.0 -4,-7 0.0074 - 4.998 ALTERNATIVE:2 ENSMUSG00000064360 mt-Nd3 ENSMUST00000082411 ENSMUSP00000080998 TRANSLATION protein_coding start - - 115.0 0.0 1.0 15.5 98.4 0.0 -1,-5 1.0 1 -2.0 PRINCIPAL:1 ENSMUSG00000064357 mt-Atp6 ENSMUST00000082408 ENSMUSP00000080996 TRANSLATION protein_coding - - - 226.0 3.0 1.0 28.8 138.7 0.0 -4,-6 1.0 1 19.0 PRINCIPAL:1 ENSMUSG00000064354 mt-Co2 ENSMUST00000082405 ENSMUSP00000080994 TRANSLATION protein_coding - - - 227.0 10.0 1.0 29.0 306.2 0.0 -4,-7 1.0 5 22.0 PRINCIPAL:1 ENSMUSG00000064345 mt-Nd2 ENSMUST00000082396 ENSMUSP00000080992 TRANSLATION protein_coding start - - 345.0 0.0 1.0 3.6 226.3 0.0 0,-3 0.9539 2 -2.0 PRINCIPAL:1 ENSMUSG00000064356 mt-Atp8 ENSMUST00000082407 ENSMUSP00000080995 TRANSLATION protein_coding - - - 67.0 0.0 1.0 6.4 78.6 0.0 -2,-5 1.0 2 14.0 PRINCIPAL:1 ENSMUSG00000064358 mt-Co3 ENSMUST00000082409 ENSMUSP00000080997 TRANSLATION protein_coding stop - - 261.0 0.0 1.0 31.0 429.5 0.0 -4,-6 1.0 1 -2.0 PRINCIPAL:1 ENSMUSG00000064351 mt-Co1 ENSMUST00000082402 ENSMUSP00000080993 TRANSLATION protein_coding - - - 514.0 67.0 1.0 24.6 476.4 0.0 -4,-5 1.0 4 22.0 PRINCIPAL:1 ENSMUSG00000064341 mt-Nd1 ENSMUST00000082392 ENSMUSP00000080991 TRANSLATION protein_coding start - - 318.0 0.0 1.0 3.9 348.8 0.0 0,-4 0.9224 5 -2.0 PRINCIPAL:1 ENSMUSG00000065947 mt-Nd4l ENSMUST00000084013 ENSMUSP00000081021 TRANSLATION protein_coding - - - 98.0 0.0 1.0 15.6 62.7 0.0 0,-4 1.0 - 16.0 PRINCIPAL:1 ENSMUSG00000064367 mt-Nd5 ENSMUST00000082418 ENSMUSP00000081001 TRANSLATION protein_coding start - - 607.0 0.0 1.0 0.1 476.5 0.0 2,-3 0.9027 4 -2.0 PRINCIPAL:1 ENSMUSG00000064363 mt-Nd4 ENSMUST00000082414 ENSMUSP00000081000 TRANSLATION protein_coding stop - - 459.0 0.0 1.0 11.1 252.6 0.0 0,-4 1.0 6 -2.0 PRINCIPAL:1 ENSMUSG00000064368 mt-Nd6 ENSMUST00000082419 ENSMUSP00000081002 TRANSLATION protein_coding - - - 172.0 0.0 1.0 2.9 65.6 0.0 -1,-5 0.9214 - 13.0 PRINCIPAL:1 ENSMUSG00000064370 mt-Cytb ENSMUST00000082421 ENSMUSP00000081003 TRANSLATION protein_coding stop - - 381.0 80.0 1.0 31.0 125.9 0.0 -4,-7 1.0 1 -2.0 PRINCIPAL:1